671 112 9 19 chrX 1 108 -176974032 + MLT1A1 LTR MaLR 260 365 0 1400 147 4 0 chrX 108 339 -176973801 + MLT1B LTR MaLR 158 389 -1 551 211 265 0 chrX 340 525 -176973615 + L1MB4 LINE L1 5906 6139 -41 1872 146 0 23 chrX 530 831 -176973309 - AluJo SINE Alu -15 297 4 3752 130 0 8 chrX 1434 1963 -176972177 + MER1A DNA MER1_type 3 527 0 1909 174 3 0 chrX 2120 2408 -176971732 + AluJb SINE Alu 2 290 -22 2210 121 3 0 chrX 2445 2742 -176971398 + AluSq SINE Alu 1 298 -15 905 115 0 8 chrX 2742 2872 -176971268 + AluSg/x SINE Alu 158 286 -24 258 32 0 0 chrX 2908 2939 -176971201 + (TG)n Simple_repeat Simple_repeat 1 31 0 903 136 34 20 chrX 2940 3087 -176971053 - AluSq/x SINE Alu -164 149 1 204 40 0 0 chrX 3186 3211 -176970929 + (T)n Simple_repeat Simple_repeat 1 25 0 2531 63 0 0 chrX 3236 3535 -176970605 - AluY SINE Alu -12 299 1 189 0 0 0 chrX 3566 3587 -176970553 + (A)n Simple_repeat Simple_repeat 1 21 0 2171 105 3 7 chrX 4038 4355 -176969785 - AluSx SINE Alu 0 316 1 783 126 0 77 chrX 4594 4737 -176969403 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 4743 4778 -176969362 + AT_rich Low_complexity Low_complexity 1 35 0 1505 128 8 16 chrX 4794 5044 -176969096 - L1MC1 LINE L1 0 6333 6086 235 281 45 0 chrX 5072 5161 -176968979 + L1MEc LINE L1 1262 1354 -5042 2142 144 0 0 chrX 5521 5827 -176968313 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 5899 5921 -176968219 + AT_rich Low_complexity Low_complexity 1 22 0 2358 112 49 0 chrX 6146 6198 -176967942 - THE1B LTR MaLR 0 364 316 2366 70 0 7 chrX 6198 6485 -176967655 - AluY SINE Alu -11 300 16 2358 112 49 0 chrX 6485 6779 -176967361 - THE1B LTR MaLR -48 316 1 402 336 24 24 chrX 6986 7236 -176966904 + L1MEc LINE L1 2302 2551 -3664 885 150 0 0 chrX 7243 7376 -176966764 + FLAM_C SINE Alu 1 133 0 2042 133 20 3 chrX 7735 8036 -176966104 - AluSx SINE Alu -6 306 1 369 0 0 0 chrX 8784 8825 -176965315 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 42 0 0 chrX 9307 9331 -176964809 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3532 65 5 0 chrX 9383 9828 -176964312 + L1PA10 LINE L1 5718 6164 -4 2003 134 35 15 chrX 9993 10336 -176963804 + L1PB4 LINE L1 5804 6153 -3 188 61 61 0 chrX 10580 10613 -176963527 + T-rich Low_complexity Low_complexity 2 36 0 1827 169 0 19 chrX 10870 11288 -176962852 + AluJb SINE Alu 1 412 0 367 73 36 0 chrX 11341 11396 -176962744 - Alu SINE Alu -5 297 241 319 193 23 11 chrX 11402 11490 -176962650 + CT-rich Low_complexity Low_complexity 4 92 0 1771 181 0 7 chrX 11493 11797 -176962343 - AluJb SINE Alu -10 302 1 2209 173 18 3 chrX 11858 12240 -176961900 + MLT1B LTR MaLR 3 390 0 1346 167 116 29 chrX 12321 12555 -176961585 - AluJo SINE Alu -13 299 36 5044 94 0 0 chrX 12555 13215 -176960925 + PABL_A LTR ERV1 1 660 0 1346 167 116 29 chrX 13215 13255 -176960885 - AluJo SINE Alu -276 36 1 247 264 16 48 chrX 13555 13680 -176960460 + L1ME LINE L1 5691 5811 -359 785 153 0 0 chrX 14088 14206 -176959934 + FLAM_C SINE Alu 1 118 -15 1156 203 14 22 chrX 14229 14451 -176959689 + AluJo SINE Alu 1 220 -92 290 118 0 39 chrX 14451 14502 -176959638 + AluSg/x SINE Alu 84 132 -168 32 26 0 0 chrX 14502 14541 -176959599 + AT_rich Low_complexity Low_complexity 1 39 0 978 137 27 0 chrX 14551 14734 -176959406 + L1MA4 LINE L1 6107 6294 -6 2113 117 0 0 chrX 14752 15034 -176959106 - AluSx SINE Alu -30 282 1 23 0 0 0 chrX 15041 15064 -176959076 + AT_rich Low_complexity Low_complexity 1 23 0 558 229 12 59 chrX 15967 16137 -176958003 - MER20 DNA MER1_type -42 177 16 1702 174 35 0 chrX 16209 16331 -176957809 + AluJo SINE Alu 1 117 -195 186 43 0 0 chrX 16331 16354 -176957786 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1702 174 35 0 chrX 16354 16518 -176957622 + AluJo SINE Alu 117 297 -15 28 29 0 0 chrX 16684 16719 -176957421 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 17065 17093 -176957047 + AT_rich Low_complexity Low_complexity 1 28 0 349 246 118 43 chrX 17477 17664 -176956476 + L1ME1 LINE L1 5736 5936 -230 2486 85 0 3 chrX 18418 18725 -176955415 - AluSg SINE Alu -4 306 1 2361 95 3 0 chrX 18957 19262 -176954878 - AluSp SINE Alu -7 306 1 616 155 35 113 chrX 19495 19637 -176954503 + FLAM_C SINE Alu 2 132 -11 5024 109 7 0 chrX 19661 20376 -176953764 + L1PA11 LINE L1 5445 6164 -10 2057 135 0 22 chrX 20379 20665 -176953475 + AluSx SINE Alu 1 281 -31 189 0 0 0 chrX 20665 20686 -176953454 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2057 135 0 22 chrX 20686 20718 -176953422 + AluSx SINE Alu 281 312 0 2727 28 9 0 chrX 20785 21104 -176953036 + L1PA4 LINE L1 5831 6152 -3 24 53 0 0 chrX 21104 21142 -176952998 + AT_rich Low_complexity Low_complexity 1 38 0 1958 141 3 13 chrX 21577 21876 -176952264 + AluSq SINE Alu 18 313 0 257 75 25 0 chrX 21909 21949 -176952191 + (GAA)n Simple_repeat Simple_repeat 2 42 0 262 228 0 0 chrX 21966 22023 -176952117 - MIR SINE MIR -146 116 60 1351 190 52 14 chrX 22128 22261 -176951879 + AluJo SINE Alu 3 129 -183 2160 110 14 0 chrX 22261 22551 -176951589 + AluSx SINE Alu 1 294 -18 1351 190 52 14 chrX 22551 22706 -176951434 + AluJo SINE Alu 129 302 -10 445 172 16 0 chrX 22790 22912 -176951228 + (TCTA)n Simple_repeat Simple_repeat 2 125 0 256 100 0 40 chrX 22916 22966 -176951174 + MLT2B1 LTR ERVL 458 505 -15 581 208 32 19 chrX 22999 23153 -176950987 + L1M4 LINE L1 5071 5226 -920 550 195 140 30 chrX 23716 23880 -176950260 + MLT1C LTR MaLR 1 182 -285 546 242 73 28 chrX 23926 24104 -176950036 + MLT1C LTR MaLR 172 357 -110 1846 150 10 30 chrX 24125 24425 -176949715 + AluJb SINE Alu 1 294 -18 768 170 0 7 chrX 24524 24659 -176949481 + FRAM SINE Alu 42 175 -1 310 339 0 17 chrX 24772 24887 -176949253 - MER5A DNA MER1_type 0 189 77 813 181 0 8 chrX 24939 25072 -176949068 - FLAM_C SINE Alu -1 132 1 272 253 0 44 chrX 25190 25281 -176948859 - L1MC4 LINE L1 -13 8029 7943 2197 138 43 0 chrX 25353 25702 -176948438 - THE1B LTR MaLR 0 364 1 10878 107 36 1 chrX 25702 27228 -176946912 - THE1B-int LTR MaLR 0 1580 1 2352 133 23 0 chrX 27228 27582 -176946558 - THE1B LTR MaLR 0 364 3 882 153 0 14 chrX 27656 27800 -176946340 + FLAM_C SINE Alu 1 142 -1 493 227 169 7 chrX 27808 27962 -176946178 - L1MC4 LINE L1 -285 7757 7579 286 164 30 0 chrX 27971 28038 -176946102 - L1MB4 LINE L1 0 6180 6112 336 200 0 0 chrX 28114 28174 -176945966 - L1MB4 LINE L1 -55 6125 6066 1233 141 0 0 chrX 28183 28360 -176945780 + AluSg/x SINE Alu 136 312 0 1153 253 88 40 chrX 28413 28935 -176945205 + L1ME1 LINE L1 4767 5313 -833 1941 141 0 3 chrX 28936 29262 -176944878 - AluSx SINE Alu 0 325 1 2108 134 0 10 chrX 29270 29575 -176944565 + AluSx SINE Alu 1 302 -10 1788 239 34 60 chrX 29575 29925 -176944215 + L1ME1 LINE L1 5595 5953 -381 1976 107 61 151 chrX 29925 30139 -176944001 - Tigger2a DNA MER2_type -2274 434 285 2005 154 13 0 chrX 30139 30445 -176943695 + AluJo SINE Alu 1 310 -2 1976 107 61 151 chrX 30445 30707 -176943433 - Tigger2a DNA MER2_type -2423 285 1 1788 239 34 60 chrX 30707 30958 -176943182 + L1ME1 LINE L1 5953 6334 0 572 184 14 40 chrX 31077 31434 -176942706 + (TATATG)n Simple_repeat Simple_repeat 1 347 0 477 216 3 55 chrX 31458 31730 -176942410 + (TATATG)n Simple_repeat Simple_repeat 1 375 -39 722 198 0 0 chrX 31730 31856 -176942284 + FLAM_C SINE Alu 1 126 -7 477 216 3 55 chrX 31856 31895 -176942245 + (TATATG)n Simple_repeat Simple_repeat 375 414 0 234 121 35 35 chrX 31899 31957 -176942183 + L1MCa LINE L1 2006 2063 -4363 520 208 4 28 chrX 31957 32203 -176941937 + (TATATG)n Simple_repeat Simple_repeat 1 240 0 220 295 16 0 chrX 32206 32267 -176941873 + (TATG)n Simple_repeat Simple_repeat 1 62 0 496 240 6 6 chrX 32268 32443 -176941697 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 1765 161 11 0 chrX 32758 33044 -176941096 - AluJo SINE Alu 0 312 24 1015 262 62 54 chrX 33413 33909 -176940231 + LTR1B LTR ERV1 25 524 -302 602 188 14 76 chrX 34014 34158 -176939982 + HUERS-P2 LTR ERV1 2 136 -2952 * 2836 207 37 40 chrX 34129 34728 -176939412 + HUERS-P2 LTR ERV1 616 1212 -1876 1718 196 10 3 chrX 34722 35023 -176939117 + HUERS-P2 LTR ERV1 1079 1381 -1707 * 2445 188 53 9 chrX 35022 35571 -176938569 + HUERS-P2 LTR ERV1 2467 3074 -14 973 229 113 91 chrX 35572 36136 -176938004 + LTR1B LTR ERV1 10 589 -237 977 191 0 0 chrX 36233 36390 -176937750 - AluJb SINE Alu -20 292 136 893 179 14 82 chrX 36390 36709 -176937431 - L1MA4 LINE L1 -27 6273 6011 23 0 0 0 chrX 36862 36885 -176937255 + AT_rich Low_complexity Low_complexity 1 23 0 743 149 9 0 chrX 36885 36999 -176937141 - FLAM_C SINE Alu -24 119 5 407 207 73 29 chrX 37452 37535 -176936605 + LTR8 LTR ERV1 1 74 -467 219 36 0 0 chrX 37535 37563 -176936577 + (TTG)n Simple_repeat Simple_repeat 3 30 0 407 207 73 29 chrX 37563 37639 -176936501 + LTR8 LTR ERV1 74 145 -396 1687 189 7 0 chrX 37755 38056 -176936084 + AluJo SINE Alu 5 307 -5 872 194 20 30 chrX 38289 38490 -176935650 + MER20 DNA MER1_type 1 199 -20 746 128 0 115 chrX 40134 40342 -176933798 - FLAM_C SINE Alu 0 191 1 264 234 26 13 chrX 40693 40770 -176933370 + (TA)n Simple_repeat Simple_repeat 2 79 0 358 259 29 3 chrX 40803 41159 -176932981 + (TA)n Simple_repeat Simple_repeat 1 365 0 267 189 54 34 chrX 41119 41167 -176932973 + (TTATA)n Simple_repeat Simple_repeat 1 47 -104 * 872 150 0 0 chrX 41167 41300 -176932840 - FLAM_C SINE Alu 0 133 1 267 189 54 34 chrX 41300 41399 -176932741 + (TTATA)n Simple_repeat Simple_repeat 47 151 0 262 219 14 41 chrX 41730 41803 -176932337 - MER116 DNA Mariner -2 78 8 2319 99 0 0 chrX 41882 42175 -176931965 - AluSx SINE Alu -19 293 1 180 158 0 0 chrX 42220 42258 -176931882 + T-rich Low_complexity Low_complexity 1 38 0 2008 143 0 0 chrX 42259 42575 -176931565 - AluSx SINE Alu 0 316 1 1597 179 66 0 chrX 42698 42971 -176931169 - AluJo SINE Alu -21 291 1 770 157 8 8 chrX 42971 43105 -176931035 - AluJo SINE Alu -176 136 3 821 136 0 0 chrX 43186 43304 -176930836 + AluJb SINE Alu 10 127 -185 2118 124 6 16 chrX 43950 44265 -176929875 + AluJo SINE Alu 1 312 0 254 93 23 0 chrX 44545 44588 -176929552 + MADE1 DNA Mariner 1 44 -36 621 146 9 125 chrX 44770 44982 -176929158 - MER4A LTR ERV1 -158 506 261 508 165 21 10 chrX 44982 45079 -176929061 - MER4A LTR ERV1 -566 98 1 2213 105 3 7 chrX 45481 45786 -176928354 - MER4E LTR ERV1 0 766 463 1047 57 0 29 chrX 45789 45929 -176928211 + AluSg/x SINE Alu 175 310 0 2960 127 31 27 chrX 45931 46420 -176927720 - MER4E LTR ERV1 -288 491 1 500 129 0 12 chrX 46771 46856 -176927284 - AluJ/FLAM SINE Alu -227 85 2 2905 13 0 0 chrX 47451 47806 -176926334 - AluY SINE Alu 0 355 1 740 191 0 22 chrX 47884 48020 -176926120 - FLAM_C SINE Alu 0 133 1 1668 174 37 7 chrX 48786 49085 -176925055 - AluJb SINE Alu 0 312 5 1875 185 0 6 chrX 49742 50056 -176924084 - AluJb SINE Alu 0 312 1 2273 123 0 0 chrX 50059 50367 -176923773 - AluSx SINE Alu -4 308 1 1429 143 31 109 chrX 50443 50561 -176923579 + AluJo SINE Alu 18 144 -168 2458 75 0 0 chrX 50561 50853 -176923287 - AluY SINE Alu -18 293 2 1429 143 31 109 chrX 50853 51027 -176923113 + AluJo SINE Alu 144 287 -25 2295 91 0 10 chrX 51030 51337 -176922803 + AluSx SINE Alu 1 304 -8 1849 154 0 36 chrX 51745 52051 -176922089 - AluJo SINE Alu -17 295 1 720 136 0 64 chrX 52455 52595 -176921545 - FLAM_C SINE Alu 0 133 3 2427 181 13 63 chrX 52600 53151 -176920989 + MER74A LTR ERVL 23 545 -13 2240 106 0 0 chrX 53198 53505 -176920635 + AluSx SINE Alu 1 307 0 650 240 6 11 chrX 53552 53727 -176920413 + MER5B DNA MER1_type 1 174 -4 1840 167 0 20 chrX 53775 54074 -176920066 + AluJo SINE Alu 4 296 -16 998 210 0 0 chrX 54074 54250 -176919890 + AluJb SINE Alu 134 309 -3 900 137 0 8 chrX 54840 54971 -176919169 + FLAM_C SINE Alu 4 133 -10 24 0 0 0 chrX 54971 54995 -176919145 + AT_rich Low_complexity Low_complexity 1 24 0 841 164 7 7 chrX 55172 55324 -176918816 + MLT1A1 LTR MaLR 1 152 -213 949 111 0 15 chrX 55327 55462 -176918678 + FLAM_C SINE Alu 1 133 0 29 94 0 0 chrX 55834 55919 -176918221 + AT_rich Low_complexity Low_complexity 1 85 0 1683 161 0 81 chrX 55978 56300 -176917840 - AluJb SINE Alu -16 296 1 837 230 148 19 chrX 56625 56943 -176917197 + MLT1D LTR MaLR 1 359 -146 969 160 10 35 chrX 56946 57008 -176917132 - MLT1B LTR MaLR -195 195 133 2553 104 28 6 chrX 57008 57364 -176916776 - THE1B LTR MaLR 0 364 1 969 160 10 35 chrX 57364 57501 -176916639 - MLT1B LTR MaLR -257 133 1 * 988 266 76 6 chrX 57501 57854 -176916286 + MLT1C LTR MaLR 88 465 -2 2025 130 0 27 chrX 58563 58864 -176915276 + AluSx SINE Alu 1 293 -19 1513 181 46 11 chrX 59003 59284 -176914856 + AluJo SINE Alu 1 291 -21 2105 144 7 0 chrX 59654 59953 -176914187 - AluSx SINE Alu -11 301 1 930 119 0 22 chrX 60044 60178 -176913962 - FLAM_C SINE Alu -2 131 1 1720 183 0 3 chrX 60585 60892 -176913248 - AluJo SINE Alu 0 306 1 1106 141 0 0 chrX 60954 61117 -176913023 + AluSg/x SINE Alu 131 293 -19 1905 133 0 73 chrX 61141 61471 -176912669 + AluJb SINE Alu 6 311 -1 241 167 42 0 chrX 62102 62150 -176911990 + MLT1D LTR MaLR 1 50 -455 327 83 42 0 chrX 62151 62199 -176911941 + MLT1D LTR MaLR 1 50 -455 303 125 42 0 chrX 62200 62248 -176911892 + MLT1D LTR MaLR 1 50 -455 335 303 80 42 chrX 62356 62620 -176911520 + L2 LINE L2 2703 2976 -338 579 159 0 37 chrX 62731 62894 -176911246 + CT-rich Low_complexity Low_complexity 3 159 0 222 314 35 23 chrX 62948 63034 -176911106 + L2 LINE L2 3137 3223 -49 2511 81 0 0 chrX 63310 63620 -176910520 - AluSg SINE Alu 0 310 1 1674 174 14 0 chrX 63620 63896 -176910244 - AluJo SINE Alu -32 280 1 2368 115 0 0 chrX 64022 64334 -176909806 - AluSx SINE Alu 0 312 1 3967 105 86 21 chrX 64893 65202 -176908938 - PABL_A LTR ERV1 0 660 372 2284 107 0 0 chrX 65202 65528 -176908612 + AluSx SINE Alu 1 326 0 3967 105 86 21 chrX 65528 65836 -176908304 - PABL_A LTR ERV1 -288 372 2 270 189 0 0 chrX 65842 65895 -176908245 - L1MB7 LINE L1 -61 6123 6071 2773 121 23 35 chrX 65895 66239 -176907901 - MER4E LTR ERV1 0 766 419 2523 94 0 0 chrX 66239 66546 -176907594 + AluSx SINE Alu 1 307 -5 2773 121 23 35 chrX 66546 66807 -176907333 - MER4E LTR ERV1 -347 419 1 1791 157 10 13 chrX 66830 67135 -176907005 - AluJb SINE Alu 0 312 9 343 143 39 0 chrX 67143 67220 -176906920 - L1MB7 LINE L1 -109 6075 5996 921 143 0 29 chrX 67268 67408 -176906732 - AluJo SINE Alu -176 136 1 598 212 97 0 chrX 67415 67580 -176906560 - L1MB7 LINE L1 -218 5966 5786 2420 99 10 0 chrX 67626 67929 -176906211 + AluSx SINE Alu 1 306 -6 392 265 5 134 chrX 67975 68364 -176905776 - HsTC2 DNA Tc2 -21 1877 1539 * 956 294 73 12 chrX 68361 68769 -176905371 - MLT1C LTR MaLR -30 437 5 813 233 149 19 chrX 68784 69093 -176905047 - MLT1D LTR MaLR -145 360 12 329 217 13 16 chrX 69115 69254 -176904886 - MLT1C LTR MaLR -145 360 192 180 163 0 0 chrX 69394 69437 -176904703 + GA-rich Low_complexity Low_complexity 2 44 0 4099 77 16 12 chrX 69802 70375 -176903765 - PABL_B LTR ERV1 0 667 93 2439 94 0 0 chrX 70375 70682 -176903458 - AluSx SINE Alu -5 307 1 253 286 0 0 chrX 71375 71431 -176902709 + (CA)n Simple_repeat Simple_repeat 1 56 0 1820 104 101 17 chrX 71455 71742 -176902398 - AluSx SINE Alu -1 311 1 720 153 65 32 chrX 71747 71871 -176902269 - FLAM_C SINE Alu -14 129 2 1073 82 109 0 chrX 71964 72111 -176902029 + AluSg/x SINE Alu 149 311 -1 1564 239 28 0 chrX 72135 72528 -176901612 - L1MB5 LINE L1 -49 6125 5722 1545 161 24 31 chrX 73041 73332 -176900808 + AluJb SINE Alu 24 312 0 1970 129 6 55 chrX 73436 73762 -176900378 + AluSx SINE Alu 1 310 -2 959 226 26 44 chrX 74205 74405 -176899735 - MLT1B LTR MaLR -15 375 180 2270 113 7 3 chrX 74405 74715 -176899425 - AluSx SINE Alu -1 311 1 959 226 26 44 chrX 74715 74784 -176899356 - MLT1B LTR MaLR -210 180 111 1325 188 82 41 chrX 75092 75384 -176898756 + AluJo SINE Alu 1 304 -8 263 200 0 43 chrX 75385 75455 -176898685 + GA-rich Low_complexity Low_complexity 1 67 0 1739 164 13 20 chrX 76056 76354 -176897786 - AluJo SINE Alu -13 299 4 928 190 15 41 chrX 76848 77043 -176897097 + AluJo SINE Alu 1 190 -122 1338 82 0 22 chrX 77588 77793 -176896347 + AluSg/x SINE Alu 118 310 0 2393 99 0 3 chrX 77968 78281 -176895859 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 78525 78560 -176895580 + GC_rich Low_complexity Low_complexity 1 35 0 244 252 0 66 chrX 78760 78896 -176895244 + GA-rich Low_complexity Low_complexity 3 211 0 233 211 18 0 chrX 78989 79046 -176895094 + (CCCCG)n Simple_repeat Simple_repeat 2 59 0 2887 141 90 52 chrX 79695 80202 -176893938 - MER51A LTR ERV1 -9 625 90 1729 115 20 112 chrX 80202 80551 -176893589 + AluYb8 SINE Alu 2 318 0 2887 141 90 52 chrX 80551 80645 -176893495 - MER51A LTR ERV1 -544 90 1 422 202 53 0 chrX 80914 81008 -176893132 + AluSg/x SINE Alu 208 306 -3 632 200 40 23 chrX 81008 81211 -176892929 - LTR54B LTR ERV1 -181 329 52 5014 91 3 3 chrX 81211 81871 -176892269 + PABL_A LTR ERV1 1 660 0 632 200 40 23 chrX 81871 81912 -176892228 - LTR54B LTR ERV1 -458 52 13 923 237 88 9 chrX 82359 82676 -176891464 - MLT1C LTR MaLR -32 435 94 912 187 44 6 chrX 82684 82866 -176891274 + MLT1B LTR MaLR 1 189 -201 634 265 95 30 chrX 82848 83193 -176890947 - MLT1C LTR MaLR -98 369 1 * 1955 140 0 3 chrX 83460 83746 -176890394 + AluJb SINE Alu 1 285 -27 597 230 13 13 chrX 83813 83965 -176890175 - L1MB8 LINE L1 -22 6156 6005 1857 158 10 49 chrX 83975 84302 -176889838 + MLT1B LTR MaLR 12 323 -67 2081 130 37 0 chrX 84302 84602 -176889538 - AluJb SINE Alu -1 311 1 1857 158 10 49 chrX 84602 84661 -176889479 + MLT1B LTR MaLR 323 383 -7 592 223 1 7 chrX 84666 84805 -176889335 - L1MB7 LINE L1 -192 5992 5876 2352 97 0 25 chrX 84884 85241 -176888899 - AluSx SINE Alu 0 349 1 1083 211 78 14 chrX 85248 85532 -176888608 + LTR52 LTR ERVL 23 324 -97 180 0 0 0 chrX 85537 85557 -176888583 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chrX 85556 85580 -176888560 + (GA)n Simple_repeat Simple_repeat 1 24 0 290 177 16 16 chrX 86091 86153 -176887987 - MER4D LTR ERV1 -8 895 834 332 97 58 19 chrX 86211 86314 -176887826 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 358 132 54 38 chrX 86359 86620 -176887520 + (TAGA)n Simple_repeat Simple_repeat 1 265 0 563 219 17 62 chrX 86646 86824 -176887316 - MER20 DNA MER1_type -2 217 48 264 77 0 0 chrX 86854 86893 -176887247 + (TAGG)n Simple_repeat Simple_repeat 1 39 0 200 140 70 0 chrX 86902 86959 -176887181 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1334 95 0 0 chrX 87259 87427 -176886713 + AluSg/x SINE Alu 137 304 -8 2290 230 48 11 chrX 87752 88291 -176885849 - MER68 LTR ERV1 -2 560 2 2015 137 0 10 chrX 88648 88941 -176885199 - AluSx SINE Alu -1 311 22 2388 53 40 7 chrX 89024 89325 -176884815 - AluY SINE Alu 0 311 1 1679 192 10 0 chrX 90023 90320 -176883820 + AluJo SINE Alu 1 300 -12 1882 157 124 122 chrX 90529 90542 -176883598 - L1MA4A LINE L1 -6 6297 6286 1218 186 103 73 chrX 90542 90843 -176883297 - AluJo SINE Alu -2 310 1 1882 157 124 122 chrX 90843 91288 -176882852 - L1MA4A LINE L1 -17 6286 5843 1765 158 3 27 chrX 91288 91586 -176882554 - AluSx SINE Alu -21 291 1 1882 157 124 122 chrX 91586 91638 -176882502 - L1MA4A LINE L1 -460 5843 5793 2195 128 0 0 chrX 91638 91944 -176882196 - AluJb SINE Alu -6 306 1 1882 157 124 122 chrX 91944 92062 -176882078 - L1MA4A LINE L1 -510 5793 5666 2278 108 0 0 chrX 92347 92642 -176881498 + AluSx SINE Alu 9 303 -9 1608 176 8 0 chrX 92646 92901 -176881239 + AluJb SINE Alu 26 282 -30 1835 148 13 44 chrX 93258 93576 -176880564 + AluJo SINE Alu 5 312 0 2340 133 75 8 chrX 93658 94057 -176880083 - MSTA LTR MaLR 0 428 3 3313 114 110 9 chrX 94290 94844 -176879296 + MER4B LTR ERV1 1 610 0 2413 141 31 9 chrX 95202 95627 -176878513 - MER4E LTR ERV1 -1 778 345 832 105 3 238 chrX 95620 95641 -176878499 - MER4D LTR ERV1 -653 219 195 * 2114 130 3 13 chrX 95641 95940 -176878200 - AluJb SINE Alu -16 296 1 832 105 3 238 chrX 95940 96097 -176878043 - MER4D LTR ERV1 -677 195 3 2562 75 0 0 chrX 96097 96405 -176877735 - AluY SINE Alu -3 308 1 2048 128 7 3 chrX 96415 96704 -176877436 - AluSx SINE Alu -22 290 1 832 105 3 238 chrX 96704 96799 -176877341 - MER4D LTR ERV1 -755 117 1 285 290 45 52 chrX 97223 97378 -176876762 - L2 LINE L2 -1 3312 3159 72 89 0 0 chrX 97378 97569 -176876571 + AT_rich Low_complexity Low_complexity 1 191 0 1184 102 0 0 chrX 98021 98033 -176876107 - AluSg/x SINE Alu -2 310 299 421 81 0 0 chrX 98033 98095 -176876045 - L1PB1 LINE L1 0 6151 6090 1184 102 0 0 chrX 98095 98248 -176875892 - AluSg/x SINE Alu -12 300 145 1915 146 10 0 chrX 98307 98609 -176875531 + AluSx SINE Alu 1 305 -7 207 0 0 0 chrX 98690 98713 -176875427 + (TG)n Simple_repeat Simple_repeat 1 23 0 426 228 39 63 chrX 98721 98848 -176875292 - MLT1G1 LTR MaLR -8 587 464 228 91 36 91 chrX 99092 99122 -176875018 - MLT2B2 LTR ERVL -6 509 482 471 118 0 0 chrX 99122 99198 -176874942 + (TGGA)n Simple_repeat Simple_repeat 2 77 0 228 91 36 91 chrX 99198 99222 -176874918 - MLT2B2 LTR ERVL -33 482 458 180 0 0 0 chrX 99258 99278 -176874862 + (GA)n Simple_repeat Simple_repeat 1 20 0 544 82 47 31 chrX 99294 99562 -176874578 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 601 141 28 34 chrX 99586 99763 -176874377 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 1914 102 0 25 chrX 100650 100962 -176873178 - AluSx SINE Alu 0 309 5 1755 161 7 20 chrX 101352 101657 -176872483 + AluJb SINE Alu 1 301 -11 364 288 68 27 chrX 101737 101883 -176872257 - MLT1J LTR MaLR -153 358 207 21 36 0 0 chrX 102862 102890 -176871250 + AT_rich Low_complexity Low_complexity 1 28 0 391 252 78 9 chrX 103110 103225 -176870915 - MLT1J LTR MaLR -153 358 236 360 183 49 24 chrX 103418 103500 -176870640 + MLT1H LTR MaLR 52 135 -420 536 219 214 26 chrX 104044 104236 -176869904 - MLT1J LTR MaLR -46 465 238 481 275 24 24 chrX 104429 104596 -176869544 + MLT1H LTR MaLR 94 260 -289 303 174 35 0 chrX 104629 104715 -176869425 + GA-rich Low_complexity Low_complexity 1 89 0 2189 153 70 48 chrX 104744 105203 -176868937 - MLT1D LTR MaLR 0 505 37 451 66 16 0 chrX 105197 105258 -176868882 - THE1C LTR MaLR -313 62 1 * 590 195 0 159 chrX 105460 105529 -176868611 + MLT1D LTR MaLR 8 86 -419 1783 218 49 13 chrX 105529 105979 -176868161 - MLT1C LTR MaLR 0 467 2 590 195 0 159 chrX 105979 106001 -176868139 + MLT1D LTR MaLR 86 110 -395 1457 103 45 232 chrX 106001 106449 -176867691 - THE1B LTR MaLR 0 364 1 590 195 0 159 chrX 106449 106551 -176867589 + MLT1D LTR MaLR 110 171 -334 1634 175 3 13 chrX 106586 106900 -176867240 - AluJo SINE Alu -1 311 1 823 173 8 0 chrX 106900 107033 -176867107 - AluJo SINE Alu -177 135 2 913 158 0 49 chrX 107052 107235 -176866905 - L1MA4 LINE L1 -7 6293 6119 2138 114 16 0 chrX 107235 107541 -176866599 + AluSx SINE Alu 1 311 -1 913 158 0 49 chrX 107541 107560 -176866580 - L1MA4 LINE L1 -181 6119 6101 2033 115 20 3 chrX 107574 107879 -176866261 + AluSx SINE Alu 1 310 -2 189 0 0 0 chrX 108003 108024 -176866116 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chrX 108166 108193 -176865947 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chrX 108360 108384 -176865756 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1484 157 8 0 chrX 108386 108641 -176865499 - AluJo SINE Alu -30 282 26 891 232 46 46 chrX 108797 109077 -176865063 + PABL_A LTR ERV1 381 660 0 1572 201 84 43 chrX 109152 109594 -176864546 - MER31A LTR ERV1 -25 460 1 1730 158 44 0 chrX 110299 110596 -176863544 + AluJb SINE Alu 1 310 -2 481 239 82 0 chrX 110667 110801 -176863339 + L1M4 LINE L1 4971 5115 -1031 219 36 0 0 chrX 110806 110834 -176863306 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1953 90 25 7 chrX 110857 111158 -176862982 + AluSc SINE Alu 1 306 0 2189 104 0 13 chrX 111159 111467 -176862673 - AluSq SINE Alu -9 304 1 324 206 100 123 chrX 111467 111637 -176862503 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 111645 111760 -176862380 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 111810 112106 -176862034 - AluSx SINE Alu -14 298 12 1873 161 3 0 chrX 112129 112440 -176861700 - AluJb SINE Alu 0 312 1 285 317 0 0 chrX 112642 112724 -176861416 - MIR SINE MIR -11 251 170 365 219 47 60 chrX 113208 113372 -176860768 + MER34 LTR ERV1 5 191 -351 2630 108 0 5 chrX 113396 113768 -176860372 - L1PB1 LINE L1 0 6151 5782 265 263 0 0 chrX 113769 113849 -176860291 + L1MC4 LINE L1 6624 6703 -1339 * 299 89 0 0 chrX 113838 113883 -176860257 + L1P5 LINE L1 5782 5826 -325 324 356 0 0 chrX 113886 113976 -176860164 - L1MC4 LINE L1 -1339 6703 6614 1312 102 2 33 chrX 113991 114203 -176859937 - L1P5 LINE L1 -360 5791 5586 1291 196 38 38 chrX 114225 114339 -176859801 + MER57B LTR ERV1 1 114 -320 1725 140 238 14 chrX 114339 114688 -176859452 - MSTA LTR MaLR -1 427 1 1291 196 38 38 chrX 114688 114864 -176859276 + MER57B LTR ERV1 113 291 -143 379 165 89 0 chrX 114871 114950 -176859190 + LTR26B LTR ERV1 446 531 0 662 218 28 0 chrX 114972 115114 -176859026 + MLT1A1 LTR MaLR 220 365 0 1872 111 17 34 chrX 115236 115578 -176858562 - AluSx SINE Alu 0 337 1 651 175 56 81 chrX 115578 115738 -176858402 - MLT1A1 LTR MaLR -209 156 1 4234 115 6 9 chrX 116148 116737 -176857403 + MER41B LTR ERV1 1 589 -46 4133 58 24 7 chrX 116737 117286 -176856854 + LTR6B LTR ERV1 1 558 0 4234 115 6 9 chrX 117286 117333 -176856807 + MER41B LTR ERV1 589 635 0 533 85 24 12 chrX 117650 117732 -176856408 - MER4E LTR ERV1 0 766 684 3493 126 35 6 chrX 117732 118270 -176855870 + MER41A LTR ERV1 1 554 0 1647 214 76 31 chrX 118315 118760 -176855380 + MER50 LTR ERV1 251 715 -19 545 121 12 0 chrX 118788 118871 -176855269 + L1MB2 LINE L1 6023 6106 -65 841 147 0 15 chrX 118897 119033 -176855107 - AluJb SINE Alu -177 135 2 333 149 15 0 chrX 119033 119100 -176855040 + L1MB2 LINE L1 6100 6167 -4 2050 136 3 0 chrX 119372 119682 -176854458 - AluSx SINE Alu -1 311 1 293 89 0 0 chrX 119914 119959 -176854181 - Alu SINE Alu -7 295 251 720 162 0 0 chrX 120012 120123 -176854017 - AluSg/x SINE Alu -7 305 195 1578 170 3 17 chrX 120173 120467 -176853673 + AluJb SINE Alu 1 290 -22 367 260 10 0 chrX 120532 120628 -176853512 - MIR SINE MIR -42 220 124 466 204 21 126 chrX 120749 120853 -176853287 + L1MC4 LINE L1 6822 6899 -1143 2279 90 0 0 chrX 120853 121154 -176852986 + AluSx SINE Alu 1 301 -11 466 204 21 126 chrX 121154 121240 -176852900 + L1MC4 LINE L1 6899 6992 -1050 944 147 0 35 chrX 121240 121410 -176852730 + FRAM SINE Alu 1 163 -13 238 353 45 8 chrX 121513 121646 -176852494 + L1MC4 LINE L1 7092 7229 -813 1638 163 6 38 chrX 121843 122163 -176851977 + AluJo SINE Alu 1 310 -2 2149 124 7 0 chrX 122192 122499 -176851641 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 122507 122529 -176851611 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 122853 122882 -176851258 + AT_rich Low_complexity Low_complexity 1 29 0 327 230 0 0 chrX 122882 122956 -176851184 - L1PA16 LINE L1 -9 6157 6084 1164 147 0 11 chrX 122985 123162 -176850978 - MER4A LTR ERV1 0 664 490 825 114 8 0 chrX 123517 123649 -176850491 - L1MA5A LINE L1 -226 6071 5939 1183 149 4 54 chrX 123669 123687 -176850453 + L1MA5A LINE L1 6065 6082 -215 3582 127 15 2 chrX 123687 124207 -176849933 + MER1A DNA MER1_type 1 527 0 1183 149 4 54 chrX 124207 124429 -176849711 + L1MA5A LINE L1 6082 6293 -4 1824 151 0 7 chrX 124530 124834 -176849306 - AluSx SINE Alu -10 302 1 1665 160 17 0 chrX 126879 127167 -176846973 - AluJo SINE Alu -18 294 2 294 175 0 0 chrX 127320 127377 -176846763 - MER4-int LTR ERV1 -5430 1168 1112 243 0 0 0 chrX 127602 127629 -176846511 + (CA)n Simple_repeat Simple_repeat 2 28 0 525 132 40 20 chrX 127753 127905 -176846235 + (TCTA)n Simple_repeat Simple_repeat 3 157 0 538 154 22 33 chrX 127936 128118 -176846022 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 297 136 36 27 chrX 128183 128229 -176845911 + (TAGA)n Simple_repeat Simple_repeat 3 47 -66 2170 90 17 0 chrX 128229 128528 -176845612 + AluSx SINE Alu 1 304 -8 297 136 36 27 chrX 128528 128591 -176845549 + (TAGA)n Simple_repeat Simple_repeat 47 113 0 21 0 0 0 chrX 128697 128718 -176845422 + AT_rich Low_complexity Low_complexity 1 21 0 1345 161 93 43 chrX 129224 129526 -176844614 + AluJo SINE Alu 1 312 0 849 119 0 0 chrX 130711 130829 -176843311 + FLAM_C SINE Alu 1 118 -25 1985 34 0 4 chrX 130836 131070 -176843070 - AluY SINE Alu -21 290 58 1938 117 0 0 chrX 131179 131452 -176842688 - AluSq SINE Alu -40 273 1 324 206 100 123 chrX 131452 131622 -176842518 - MER34C LTR ERV1 -409 176 11 587 191 61 9 chrX 131630 131745 -176842395 + MER89 LTR ERV1 417 537 -22 2026 95 0 30 chrX 131795 132091 -176842049 - AluSx SINE Alu -14 298 12 1261 248 3 0 chrX 132110 132421 -176841719 - AluJb SINE Alu 0 312 1 22 0 0 0 chrX 132902 132924 -176841216 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chrX 133067 133094 -176841046 + (A)n Simple_repeat Simple_repeat 1 27 0 546 227 161 39 chrX 133603 133707 -176840433 + MLT1J2 LTR MaLR 126 216 -234 653 248 25 20 chrX 133707 133909 -176840231 - MER105 DNA DNA -1 203 1 546 227 161 39 chrX 133909 134075 -176840065 + MLT1J2 LTR MaLR 216 450 0 296 338 46 70 chrX 134470 134754 -176839386 - L2 LINE L2 -55 3258 2982 1792 135 40 20 chrX 135015 135318 -176838822 - AluSx SINE Alu -3 309 1 1091 196 12 80 chrX 135338 135760 -176838380 + L1MA9 LINE L1 5946 6324 -10 25 31 0 0 chrX 135765 135797 -176838343 + AT_rich Low_complexity Low_complexity 1 32 0 228 306 105 24 chrX 135989 136113 -176838027 - MIR SINE MIR -74 188 55 2052 102 0 3 chrX 137391 137721 -176836419 - AluSx SINE Alu 0 329 1 550 293 99 92 chrX 138182 138625 -176835515 + L1MEc LINE L1 786 1156 -5049 1967 106 0 3 chrX 138625 138938 -176835202 + AluSx SINE Alu 1 312 0 550 293 99 92 chrX 138938 139047 -176835093 + L1MEc LINE L1 1156 1263 -4942 1771 147 16 3 chrX 139186 139492 -176834648 + AluJb SINE Alu 1 310 -2 1915 172 21 3 chrX 139733 140059 -176834081 + MER2 DNA MER2_type 7 338 -7 1276 99 0 6 chrX 140276 140458 -176833682 - L1PA8 LINE L1 0 6172 5992 880 64 0 0 chrX 140650 140760 -176833380 - AluSx SINE Alu -9 301 192 978 128 0 0 chrX 140761 140902 -176833238 - AluSx SINE Alu -171 141 1 2128 118 0 3 chrX 141009 141315 -176832825 - AluSx SINE Alu -7 305 1 502 146 12 0 chrX 141315 141397 -176832743 + Tigger5 DNA MER2_type 2241 2323 0 4978 136 13 19 chrX 142302 142632 -176831508 - L1MA5A LINE L1 0 6297 5967 1746 152 3 3 chrX 142632 142915 -176831225 - AluJb SINE Alu -29 283 1 4978 136 13 19 chrX 142915 143442 -176830698 - L1MA5A LINE L1 -330 5967 5445 2032 126 13 10 chrX 144069 144379 -176829761 + AluSx SINE Alu 1 311 -1 453 134 62 52 chrX 144561 144658 -176829482 + MER4A LTR ERV1 1 98 -566 1686 103 22 43 chrX 144658 144977 -176829163 + MER4A LTR ERV1 263 633 -31 1821 199 40 49 chrX 146043 146524 -176827616 - MLT1D LTR MaLR -1 488 27 2244 121 0 0 chrX 147408 147713 -176826427 + AluSx SINE Alu 1 305 -7 180 0 0 0 chrX 147774 147794 -176826346 + (A)n Simple_repeat Simple_repeat 1 20 0 349 209 85 69 chrX 149590 149806 -176824334 - MER106B DNA MER1_type -10 1049 3 965 252 103 50 chrX 149892 149951 -176824189 - Charlie1b DNA MER1_type -2259 502 448 1804 150 7 16 chrX 149951 150258 -176823882 - AluJb SINE Alu -8 304 1 965 252 103 50 chrX 150258 150675 -176823465 - Charlie1b DNA MER1_type -2313 448 1 391 307 0 0 chrX 150728 150881 -176823259 + (TA)n Simple_repeat Simple_repeat 2 154 0 259 141 16 62 chrX 150897 151025 -176823115 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 203 146 0 42 chrX 151055 151103 -176823037 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 344 145 5 72 chrX 151129 151322 -176822818 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 568 145 11 43 chrX 151352 151538 -176822602 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 702 11 32 0 chrX 151623 151718 -176822422 + (TAGA)n Simple_repeat Simple_repeat 3 100 0 524 191 0 71 chrX 152455 152499 -176821641 + MER58A DNA MER1_type 45 91 -250 1512 135 9 120 chrX 152499 152832 -176821308 - AluJo SINE Alu -16 296 1 524 191 0 71 chrX 152832 152850 -176821290 + MER58A DNA MER1_type 91 109 -232 1899 205 6 0 chrX 152850 153196 -176820944 + MER7A DNA MER2_type 1 346 0 524 191 0 71 chrX 153196 153258 -176820882 + MER58A DNA MER1_type 109 161 -63 2019 140 7 0 chrX 153501 153786 -176820354 - AluSx SINE Alu -25 287 1 1274 148 14 0 chrX 154002 154212 -176819928 + AluSg/x SINE Alu 86 298 -14 2183 93 14 0 chrX 154931 155247 -176818893 + AluSx SINE Alu 1 320 0 1260 115 0 0 chrX 155253 155427 -176818713 + AluSg/x SINE Alu 131 304 -8 1848 234 84 40 chrX 155982 156171 -176817969 + L1MC4a LINE L1 6787 6966 -842 1994 146 0 7 chrX 156171 156465 -176817675 - AluJo SINE Alu -20 292 1 1848 234 84 40 chrX 156465 156894 -176817246 + L1MC4a LINE L1 6966 7439 -369 2083 110 7 0 chrX 156894 157196 -176816944 + AluSx SINE Alu 1 304 0 1848 234 84 40 chrX 157196 157233 -176816907 + L1MC4a LINE L1 7439 7473 -335 2813 74 94 5 chrX 157507 157912 -176816228 - LTR7 LTR ERV1 -9 441 1 1846 161 3 11 chrX 158281 158605 -176815535 - AluJo SINE Alu 0 322 1 229 314 93 21 chrX 158613 158807 -176815333 - HAL1 LINE L1 -767 1740 1533 245 284 176 12 chrX 158827 159077 -176815063 - HAL1 LINE L1 -1059 1448 1158 253 299 69 0 chrX 159248 159335 -176814805 - L1ME LINE L1 -401 5720 5628 717 106 10 0 chrX 159654 159758 -176814382 - L1MA2 LINE L1 -56 6248 6144 2281 79 23 13 chrX 159878 160181 -176813959 - AluSx SINE Alu -6 306 1 552 255 60 0 chrX 160462 160611 -176813529 + MER20 DNA MER1_type 48 205 -14 423 0 0 0 chrX 160687 160734 -176813406 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1967 105 3 57 chrX 160735 161031 -176813109 - AluSx SINE Alu -32 280 1 1593 159 4 15 chrX 161668 161938 -176812202 - AluJo SINE Alu -5 307 41 30 0 0 0 chrX 162031 162061 -176812079 + AT_rich Low_complexity Low_complexity 1 30 0 2237 113 0 25 chrX 162063 162382 -176811758 + AluSx SINE Alu 1 311 -1 318 203 0 0 chrX 162385 162449 -176811691 + L1MC4 LINE L1 6640 6703 -1339 23 0 0 0 chrX 162450 162473 -176811667 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 162495 162530 -176811610 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 162548 162570 -176811570 + AT_rich Low_complexity Low_complexity 1 22 0 507 218 11 22 chrX 162607 162786 -176811354 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 234 197 53 53 chrX 162805 162881 -176811259 + L1MC3 LINE L1 6571 6646 -1139 652 221 2 10 chrX 162881 163473 -176810667 + (CATATA)n Simple_repeat Simple_repeat 1 587 0 214 270 0 58 chrX 163522 163696 -176810444 + (CATATA)n Simple_repeat Simple_repeat 2 165 0 243 231 103 0 chrX 163699 163777 -176810363 - L1MC4 LINE L1 -1344 6698 6613 1744 170 0 38 chrX 164280 164598 -176809542 + AluJb SINE Alu 1 306 -6 2070 128 10 3 chrX 165109 165405 -176808735 + AluJb SINE Alu 1 298 -14 1760 174 16 10 chrX 165729 166039 -176808101 + AluJo SINE Alu 1 312 0 630 168 23 12 chrX 166753 166926 -176807214 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 600 134 53 12 chrX 166959 167130 -176807010 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 682 116 35 17 chrX 167144 167316 -176806824 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 448 86 86 19 chrX 167371 167533 -176806607 + (TCTA)n Simple_repeat Simple_repeat 4 176 0 181 158 53 0 chrX 167563 167620 -176806520 + (TCTA)n Simple_repeat Simple_repeat 1 60 0 1320 161 87 0 chrX 168162 168416 -176805724 - L1MB5 LINE L1 -6 6168 5893 1510 178 68 0 chrX 168455 168748 -176805392 - L1MB5 LINE L1 -14 6160 5848 837 251 55 42 chrX 169334 169737 -176804403 + HAL1 LINE L1 970 1377 -1130 348 83 0 0 chrX 169754 169802 -176804338 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 302 260 123 62 chrX 169854 170146 -176803994 + HAL1 LINE L1 1404 1713 -794 23 0 0 0 chrX 170168 170191 -176803949 + AT_rich Low_complexity Low_complexity 1 23 0 901 179 7 0 chrX 170191 170336 -176803804 + FRAM SINE Alu 12 157 -19 393 22 0 0 chrX 170337 170383 -176803757 + (TG)n Simple_repeat Simple_repeat 2 47 0 1601 179 23 0 chrX 171250 171513 -176802627 - AluJo SINE Alu -25 287 19 1792 111 16 46 chrX 171528 171834 -176802306 - AluJo SINE Alu -10 302 6 905 173 113 90 chrX 172401 172756 -176801384 - MLT1C LTR MaLR 0 390 61 3924 107 42 23 chrX 172756 173355 -176800785 + MER4B LTR ERV1 1 610 0 905 173 113 90 chrX 173355 173413 -176800727 - MLT1C LTR MaLR -329 61 6 1980 177 8 20 chrX 174789 175184 -176798956 + MLT1B LTR MaLR 1 390 0 1588 128 76 49 chrX 175210 175387 -176798753 + MLT1B LTR MaLR 1 191 -199 2230 110 0 0 chrX 175387 175679 -176798461 + AluSp SINE Alu 1 292 -21 1588 128 76 49 chrX 175679 175789 -176798351 + MLT1B LTR MaLR 191 296 -94 487 265 19 31 chrX 176029 176191 -176797949 + Charlie1 DNA MER1_type 2163 2322 -439 259 246 33 16 chrX 176599 176660 -176797480 - HERVL74 LTR ERVL -4776 909 848 924 130 0 0 chrX 176856 176979 -176797161 + FLAM_C SINE Alu 1 123 -20 23 54 0 0 chrX 176979 177016 -176797124 + AT_rich Low_complexity Low_complexity 1 37 0 1945 141 7 7 chrX 177277 177583 -176796557 - AluJo SINE Alu -6 306 1 26 0 0 0 chrX 178644 178670 -176795470 + GC_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chrX 178799 178836 -176795304 + GC_rich Low_complexity Low_complexity 1 37 0 27 29 0 0 chrX 178943 178977 -176795163 + GC_rich Low_complexity Low_complexity 1 34 0 189 154 0 0 chrX 179192 179231 -176794909 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 222 236 0 18 chrX 179274 179329 -176794811 + (CATG)n Simple_repeat Simple_repeat 1 54 0 358 270 3 17 chrX 179376 179739 -176794401 + (TGAA)n Simple_repeat Simple_repeat 1 357 0 198 289 0 0 chrX 179758 179907 -176794233 + (TGAA)n Simple_repeat Simple_repeat 4 152 0 195 162 0 0 chrX 179967 180004 -176794136 + (TGAG)n Simple_repeat Simple_repeat 1 37 0 321 304 19 6 chrX 180011 180172 -176793968 + (TGAA)n Simple_repeat Simple_repeat 1 163 0 403 186 0 16 chrX 180254 180383 -176793757 + (TGAA)n Simple_repeat Simple_repeat 4 130 0 427 216 28 33 chrX 180406 180664 -176793476 + (TGAG)n Simple_repeat Simple_repeat 1 256 0 3513 171 2 0 chrX 181125 181715 -176792425 - L1PB4 LINE L1 -3 6153 5563 593 264 46 42 chrX 182214 182430 -176791710 - MER20 DNA MER1_type -2 217 1 565 131 51 17 chrX 182432 182652 -176791488 + (TAGA)n Simple_repeat Simple_repeat 1 262 -15 246 32 0 0 chrX 182652 182683 -176791457 + (ATG)n Simple_repeat Simple_repeat 2 32 0 565 131 51 17 chrX 182683 182700 -176791440 + (TAGA)n Simple_repeat Simple_repeat 262 277 0 354 163 20 82 chrX 183327 183425 -176790715 - L2 LINE L2 0 3313 3222 795 251 94 59 chrX 183429 183736 -176790404 - L2 LINE L2 -49 3264 2947 1821 281 33 12 chrX 183745 184385 -176789755 - L2 LINE L2 -509 2805 2153 8799 51 15 3 chrX 184513 185648 -176788492 + L1PA13 LINE L1 3682 4830 -1316 5601 113 1 4 chrX 185749 186560 -176787580 + L1PA13 LINE L1 5355 6163 0 1696 81 5 14 chrX 186560 186781 -176787359 + AluY SINE Alu 1 219 -92 3726 148 48 17 chrX 186883 187307 -176786833 + L1M1 LINE L1 2977 3386 -4179 297 0 0 0 chrX 187307 187340 -176786800 + (CA)n Simple_repeat Simple_repeat 2 34 0 3726 148 48 17 chrX 187340 187899 -176786241 + L1M1 LINE L1 3386 3994 -3571 433 155 24 60 chrX 188054 188138 -176786002 + MLT1D LTR MaLR 5 85 -420 708 167 35 7 chrX 188145 188289 -176785851 + MER96B DNA MER1_type? 265 412 -5 305 368 35 7 chrX 188314 188458 -176785682 + L2 LINE L2 3107 3254 -18 207 241 46 0 chrX 188599 188686 -176785454 + (TATG)n Simple_repeat Simple_repeat 2 92 0 431 123 41 0 chrX 190169 190242 -176783898 - L1MA3 LINE L1 -5 6300 6225 604 298 44 5 chrX 191039 191244 -176782896 + MIR SINE MIR 47 259 -3 312 205 137 87 chrX 191346 191507 -176782633 + L2 LINE L2 2622 2790 -524 8004 61 8 0 chrX 192922 193970 -176780170 + L1P LINE L1 1400 2455 -3691 292 251 128 21 chrX 194082 194277 -176779863 - MLT1C LTR MaLR -147 358 127 1235 196 27 4 chrX 194277 194537 -176779603 - L1MB5 LINE L1 -100 6074 5809 667 297 114 0 chrX 195709 195928 -176778212 - MIR SINE MIR 0 262 19 212 152 15 106 chrX 195934 196000 -176778140 + MIR SINE MIR 101 160 -102 2061 132 3 0 chrX 196280 196590 -176777550 + AluSx SINE Alu 1 311 -1 817 125 8 0 chrX 196592 196720 -176777420 + L1PB2 LINE L1 6023 6151 0 1060 204 103 43 chrX 197031 197093 -176777047 - MLT1C LTR MaLR -6 461 404 2019 125 3 0 chrX 197093 197389 -176776751 + AluSx SINE Alu 4 300 -12 1060 204 103 43 chrX 197389 197655 -176776485 - MLT1C LTR MaLR -63 404 113 1093 171 11 0 chrX 197663 197850 -176776290 + MLT1B LTR MaLR 1 189 -201 700 212 71 119 chrX 197863 198075 -176776065 - MLT1C LTR MaLR -143 324 134 2021 114 0 0 chrX 198075 198364 -176775776 - AluSx SINE Alu -23 289 1 700 212 71 119 chrX 198364 198492 -176775648 - MLT1C LTR MaLR -333 134 1 767 248 109 8 chrX 198502 198807 -176775333 - MLT1C LTR MaLR -122 345 1 262 310 43 17 chrX 198825 198941 -176775199 - LTR33 LTR ERVL -370 151 33 2289 94 0 0 chrX 199016 199315 -176774825 + AluSg SINE Alu 1 299 -11 2242 95 10 0 chrX 200004 200310 -176773830 + AluSx SINE Alu 1 309 -3 670 166 19 39 chrX 200962 201478 -176772662 + (TAGA)n Simple_repeat Simple_repeat 1 800 -25 1649 196 0 0 chrX 201478 201779 -176772361 + AluJo SINE Alu 1 301 -11 670 166 19 39 chrX 201779 201805 -176772335 + (TAGA)n Simple_repeat Simple_repeat 800 825 0 334 247 26 0 chrX 201920 201997 -176772143 - MER20 DNA MER1_type 0 219 141 717 243 17 6 chrX 202023 202196 -176771944 + MLT1B LTR MaLR 293 467 0 2172 93 3 3 chrX 202251 202552 -176771588 - AluSq SINE Alu -12 301 1 649 193 96 0 chrX 202553 202688 -176771452 - MLT1A1 LTR MaLR -208 157 10 1787 157 10 3 chrX 202729 203028 -176771112 - MLT1A1 LTR MaLR -64 301 1 2273 89 0 0 chrX 203307 203609 -176770531 + AluY SINE Alu 1 302 -9 2023 123 3 3 chrX 203802 204104 -176770036 + AluSx SINE Alu 1 302 -10 485 234 0 19 chrX 204591 204698 -176769442 + MER5A DNA MER1_type 1 105 -84 2203 249 38 23 chrX 204778 205304 -176768836 - MER87 LTR ERV1 -7 534 1 233 69 0 0 chrX 205538 205567 -176768573 + (GA)n Simple_repeat Simple_repeat 1 29 0 580 161 27 13 chrX 205567 205716 -176768424 + GA-rich Low_complexity Low_complexity 4 154 0 2108 100 3 7 chrX 206300 206600 -176767540 + AluSx SINE Alu 6 304 -8 1195 168 21 66 chrX 206770 206901 -176767239 - L1MA8 LINE L1 0 6291 6156 2015 122 0 0 chrX 206901 207196 -176766944 - AluY SINE Alu -16 295 1 1195 168 21 66 chrX 207196 207350 -176766790 - L1MA8 LINE L1 -135 6156 6019 2025 227 92 50 chrX 207361 207506 -176766634 - MER50 LTR ERV1 -7 727 589 2179 106 0 3 chrX 207506 207808 -176766332 - AluSg SINE Alu -9 301 1 2025 227 92 50 chrX 207808 208234 -176765906 - MER50 LTR ERV1 -145 589 119 1743 100 104 11 chrX 208234 208503 -176765637 - AluSg1 SINE Alu -15 294 1 2025 227 92 50 chrX 208503 208627 -176765513 - MER50 LTR ERV1 -615 119 2 1031 165 11 21 chrX 208627 208815 -176765325 - L1MA8 LINE L1 -276 6015 5830 633 110 0 0 chrX 208819 208910 -176765230 - AluSg/x SINE Alu -6 303 213 632 105 62 18 chrX 209013 209522 -176764618 + GA-rich Low_complexity Low_complexity 1 531 0 1870 155 153 27 chrX 209629 210041 -176764099 + MER4C LTR ERV1 1 464 -1 21 0 0 0 chrX 210183 210204 -176763936 + GC_rich Low_complexity Low_complexity 1 21 0 407 223 9 0 chrX 210801 210913 -176763227 + (TGGA)n Simple_repeat Simple_repeat 4 116 0 180 368 69 11 chrX 211040 211127 -176763013 - MIR3 SINE MIR -114 94 3 412 250 0 17 chrX 211396 211512 -176762628 + AluSp SINE Alu 2 115 -198 344 186 0 0 chrX 211512 211571 -176762569 + MLT1C LTR MaLR 357 415 -52 1664 161 4 0 chrX 211582 211861 -176762279 - AluSx SINE Alu -29 283 4 817 125 8 0 chrX 212235 212363 -176761777 - L1PB2 LINE L1 0 6151 6023 2029 134 0 6 chrX 212365 212678 -176761462 - AluSx SINE Alu -1 311 1 514 208 102 19 chrX 213211 213380 -176760760 - MER39 LTR ERV1 -1 687 471 705 133 0 9 chrX 213380 213507 -176760633 - AluSx SINE Alu 0 309 189 685 89 11 0 chrX 213504 213594 -176760546 - AluSx SINE Alu -205 107 17 * 842 197 40 100 chrX 213594 213654 -176760486 - MER39 LTR ERV1 -178 529 467 4376 69 9 0 chrX 213654 214202 -176759938 - MER41A LTR ERV1 -1 553 1 842 197 40 100 chrX 214202 214440 -176759700 - MER39 LTR ERV1 -240 467 249 242 196 20 0 chrX 214453 214504 -176759636 - MER39 LTR ERV1 -655 52 1 1149 107 24 0 chrX 214863 215031 -176759109 + AluSg/x SINE Alu 136 307 -5 2036 110 3 0 chrX 215455 215746 -176758394 - AluSx SINE Alu -18 294 3 290 315 153 20 chrX 215990 216193 -176757947 + MARNA DNA Mariner 104 333 -253 2242 107 3 0 chrX 217212 217522 -176756618 - AluSx SINE Alu -1 311 1 254 136 0 0 chrX 217774 217818 -176756322 - Alu SINE Alu -2 299 256 756 233 3 6 chrX 217918 218277 -176755863 + (TCCA)n Simple_repeat Simple_repeat 1 358 0 368 292 21 108 chrX 218470 218606 -176755534 - MLT1J LTR MaLR -64 447 338 2185 78 0 0 chrX 218606 218924 -176755216 + AluSg SINE Alu 1 318 0 368 292 21 108 chrX 218924 219026 -176755114 - MLT1J LTR MaLR -173 338 229 180 111 0 0 chrX 219026 219053 -176755087 + (A)n Simple_repeat Simple_repeat 1 27 0 1602 170 7 3 chrX 220067 220361 -176753779 - AluJb SINE Alu -17 295 1 262 324 101 26 chrX 221558 221904 -176752236 + L1ME LINE L1 5490 5861 -260 619 273 17 0 chrX 222683 222855 -176751285 - MER45A DNA AcHobo -3 175 1 1969 126 7 0 chrX 223654 223955 -176750185 - AluSp SINE Alu -10 303 1 2047 202 8 0 chrX 224084 224475 -176749665 + L1MB5 LINE L1 5745 6138 -36 2403 76 0 0 chrX 224479 224783 -176749357 + AluSg SINE Alu 1 304 -6 1394 182 14 17 chrX 224793 225089 -176749051 + AluJo SINE Alu 1 295 -17 218 237 31 31 chrX 226062 226159 -176747981 + GA-rich Low_complexity Low_complexity 2 98 0 832 145 0 22 chrX 226408 226546 -176747594 + AluJo SINE Alu 1 135 -177 327 161 0 0 chrX 227540 227596 -176746544 + L1MA7 LINE L1 6233 6288 -3 1933 104 0 0 chrX 227605 227873 -176746267 + AluSg SINE Alu 39 306 -4 897 254 40 40 chrX 228057 228356 -176745784 + Charlie4a DNA MER1_type 12 310 -198 214 245 0 47 chrX 229499 229605 -176744535 + C-rich Low_complexity Low_complexity 4 104 0 1953 112 0 3 chrX 229705 229991 -176744149 + AluSx SINE Alu 14 298 -14 181 0 33 33 chrX 229993 230023 -176744117 + (TATAA)n Simple_repeat Simple_repeat 4 33 0 2278 75 0 7 chrX 230512 230818 -176743322 + AluY SINE Alu 1 304 -7 1478 198 0 24 chrX 231017 231310 -176742830 - AluJb SINE Alu -19 293 8 237 232 0 0 chrX 231359 231428 -176742712 + GA-rich Low_complexity Low_complexity 2 70 0 309 236 28 28 chrX 231504 231610 -176742530 - MLT1J2 LTR MaLR 0 450 345 1240 202 12 62 chrX 232021 232069 -176742071 + L1MB8 LINE L1 5569 5618 -560 2123 114 91 26 chrX 232069 232411 -176741729 - THE1B LTR MaLR 0 364 1 1240 202 12 62 chrX 232411 232682 -176741458 + L1MB8 LINE L1 5618 5873 -305 1689 163 0 43 chrX 232682 233008 -176741132 + AluSx SINE Alu 1 312 0 1240 202 12 62 chrX 233008 233023 -176741117 + L1MB8 LINE L1 5873 5887 -291 274 109 43 0 chrX 233067 233113 -176741027 - MER34C LTR ERV1 -533 52 5 * 354 123 46 0 chrX 233081 233146 -176740994 - MER34C LTR ERV1 -512 73 6 382 275 50 102 chrX 234087 234387 -176739753 - LTR16C LTR ERVL -14 477 153 2392 156 51 10 chrX 234387 234798 -176739342 - MSTA LTR MaLR 0 428 1 382 275 50 102 chrX 234798 234903 -176739237 - LTR16C LTR ERVL -338 153 44 3741 121 23 62 chrX 235200 235313 -176738827 - MER41B LTR ERV1 0 635 519 1689 199 0 0 chrX 235313 235619 -176738521 + AluJo SINE Alu 1 306 -6 3741 121 23 62 chrX 235619 236166 -176737974 - MER41B LTR ERV1 -116 519 1 2268 97 0 3 chrX 236179 236487 -176737653 + AluSq SINE Alu 1 307 -6 1475 231 89 11 chrX 236530 236911 -176737229 + MER87 LTR ERV1 1 411 -130 216 0 0 0 chrX 237053 237077 -176737063 + (TTC)n Simple_repeat Simple_repeat 1 24 0 2186 92 16 0 chrX 237082 237387 -176736753 - AluSg SINE Alu 0 310 1 792 234 5 3 chrX 238313 238685 -176735455 + (TCCA)n Simple_repeat Simple_repeat 1 373 0 724 181 6 6 chrX 238702 238879 -176735261 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 344 316 124 28 chrX 239629 239847 -176734293 + MIR SINE MIR 10 248 -14 2059 121 0 3 chrX 240142 240440 -176733700 + AluSg1 SINE Alu 1 297 -12 746 176 12 44 chrX 240599 240826 -176733314 - L1M4c LINE L1 -4768 1616 1356 1924 185 83 46 chrX 241181 241661 -176732479 + MLT1D LTR MaLR 2 499 -6 2295 97 0 13 chrX 242510 242818 -176731322 - AluY SINE Alu -7 304 1 1412 97 0 20 chrX 243479 243652 -176730488 - AluSg/x SINE Alu -6 304 134 2245 107 7 0 chrX 243652 243942 -176730198 - AluSx SINE Alu -20 292 1 1412 97 0 20 chrX 243942 243964 -176730176 - AluSg/x SINE Alu -176 134 113 1500 260 48 9 chrX 244193 244632 -176729508 + MLT1D LTR MaLR 1 456 -49 847 181 0 0 chrX 244784 244917 -176729223 - FLAM_C SINE Alu 0 133 1 1928 176 3 0 chrX 244923 245229 -176728911 - AluSx SINE Alu -5 307 1 1735 120 0 4 chrX 245843 246076 -176728064 + AluSg SINE Alu 4 235 -75 1234 123 24 0 chrX 246176 246366 -176727774 + AluSg/x SINE Alu 108 301 0 2358 94 3 0 chrX 247096 247394 -176726746 + AluSp SINE Alu 1 299 -14 307 286 0 0 chrX 247577 247654 -176726486 + (TG)n Simple_repeat Simple_repeat 2 78 0 558 205 3 30 chrX 247659 247994 -176726146 + (TATG)n Simple_repeat Simple_repeat 1 325 0 208 234 0 37 chrX 248018 248125 -176726015 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1589 160 79 18 chrX 248519 248833 -176725307 + MER65A LTR ERV1 82 420 -25 2046 142 80 17 chrX 248833 249235 -176724905 - MSTA LTR MaLR 0 428 2 1589 160 79 18 chrX 249235 249263 -176724877 + MER65A LTR ERV1 420 445 0 319 230 12 21 chrX 250032 250374 -176723766 + (TCTA)n Simple_repeat Simple_repeat 1 338 0 367 170 22 39 chrX 250403 250585 -176723555 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 2382 102 0 0 chrX 250886 251189 -176722951 - AluSx SINE Alu -9 303 1 2383 94 3 0 chrX 251199 251497 -176722643 - AluSp SINE Alu -14 299 1 1264 118 0 0 chrX 252354 252524 -176721616 - AluSg/x SINE Alu -9 303 134 2260 111 0 3 chrX 252524 252830 -176721310 - AluSx SINE Alu -7 305 1 3088 169 9 0 chrX 252947 253487 -176720653 + L1PA16 LINE L1 5584 6128 -38 332 212 0 30 chrX 253626 253692 -176720448 + L1MC4 LINE L1 6641 6704 -1338 356 297 0 22 chrX 253745 253836 -176720304 - L1MC4 LINE L1 -1339 6703 6615 258 300 0 0 chrX 253838 253908 -176720232 + (TA)n Simple_repeat Simple_repeat 1 70 0 345 212 166 67 chrX 254002 254195 -176719945 - L2 LINE L2 -5 3308 3097 1615 213 9 42 chrX 254234 254661 -176719479 + L1M4 LINE L1 5377 5789 -389 25 0 0 0 chrX 254775 254800 -176719340 + GC_rich Low_complexity Low_complexity 1 25 0 2534 60 3 3 chrX 255253 255555 -176718585 + AluSp SINE Alu 1 302 -11 1686 178 3 30 chrX 255559 255862 -176718278 + AluJb SINE Alu 2 296 -16 3720 130 42 18 chrX 256482 256933 -176717207 + LTR9 LTR ERV1 1 471 -141 189 0 0 0 chrX 256933 256954 -176717186 + (TC)n Simple_repeat Simple_repeat 2 22 0 3720 130 42 18 chrX 256954 257100 -176717040 + LTR9 LTR ERV1 471 612 0 3873 61 15 81 chrX 257266 257858 -176716282 + MER41A LTR ERV1 2 554 0 2232 109 0 3 chrX 258351 258645 -176715495 + AluSx SINE Alu 16 308 -4 2500 126 37 0 chrX 258645 259027 -176715113 + L1PA11 LINE L1 5779 6174 0 1194 178 50 27 chrX 259042 259300 -176714840 + LTR49 LTR ERV1 98 361 -234 579 177 48 16 chrX 259321 259445 -176714695 - AluJb SINE Alu 0 312 185 22 0 0 0 chrX 259448 259470 -176714670 + AT_rich Low_complexity Low_complexity 1 22 0 1341 368 0 47 chrX 259487 259808 -176714332 + AluSx SINE Alu 5 310 -2 1617 189 20 14 chrX 259870 260166 -176713974 - AluJo SINE Alu -8 304 7 717 226 17 133 chrX 260194 260473 -176713667 - LTR52 LTR ERVL -26 395 164 2423 99 0 0 chrX 260473 260777 -176713363 - AluSx SINE Alu -8 304 1 717 226 17 133 chrX 260777 260851 -176713289 - LTR52 LTR ERVL -257 164 83 685 182 157 6 chrX 260873 261032 -176713108 - MSTA LTR MaLR -245 183 1 1675 188 48 58 chrX 261054 261448 -176712692 - MLT2B2 LTR ERVL -28 487 98 572 145 161 24 chrX 261568 261692 -176712448 - MSTB1 LTR MaLR -313 144 4 1866 185 34 27 chrX 261901 262448 -176711692 - MLT2A2 LTR ERVL 0 554 1 3124 169 4 24 chrX 262500 263038 -176711102 - MER1A DNA MER1_type 0 527 1 509 313 6 6 chrX 263200 263363 -176710777 - MER63A DNA MER1_type -4 206 44 2064 136 0 0 chrX 264091 264427 -176709713 - AluSx SINE Alu 0 336 1 2249 92 3 7 chrX 264433 264738 -176709402 - AluSx SINE Alu -6 306 3 257 315 167 6 chrX 265023 265185 -176708955 + MARNA DNA Mariner 146 333 -253 2230 105 7 0 chrX 266375 266670 -176707470 - AluSx SINE Alu -12 300 4 825 122 32 0 chrX 266684 266807 -176707333 - FLAM_C SINE Alu -2 131 5 2102 141 0 3 chrX 267210 267514 -176706626 + AluSx SINE Alu 1 303 -9 288 0 0 0 chrX 267694 267726 -176706414 + (CA)n Simple_repeat Simple_repeat 2 33 0 240 283 69 69 chrX 267802 267975 -176706165 + MIR SINE MIR 90 262 0 2388 100 0 3 chrX 268219 268530 -176705610 + AluSg SINE Alu 1 310 0 300 248 116 33 chrX 268690 268811 -176705329 + MIR SINE MIR 23 153 -55 56 61 0 0 chrX 271591 271689 -176702451 + GC_rich Low_complexity Low_complexity 1 98 0 342 283 103 68 chrX 271722 272150 -176701990 - L1M2 LINE L1 -5651 1198 756 192 97 0 0 chrX 272389 272420 -176701720 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 220 0 0 chrX 273737 273787 -176700353 + (TG)n Simple_repeat Simple_repeat 1 50 0 3215 91 2 9 chrX 274118 274578 -176699562 - PABL_B LTR ERV1 -210 457 1 2020 112 0 69 chrX 274652 274978 -176699162 - AluSx SINE Alu 0 305 1 1277 168 112 56 chrX 275120 275388 -176698752 + AluJb SINE Alu 1 283 -29 3039 131 50 84 chrX 275678 276086 -176698054 - MER4A LTR ERV1 -4 596 215 2135 119 3 22 chrX 276086 276398 -176697742 - AluSq SINE Alu -4 309 4 3039 131 50 84 chrX 276398 276606 -176697534 - MER4A LTR ERV1 -385 215 1 1852 171 13 30 chrX 276607 276646 -176697494 - L1MA4 LINE L1 -15 6285 6247 261 83 0 0 chrX 276646 276682 -176697458 + (TA)n Simple_repeat Simple_repeat 2 37 0 1357 64 0 6 chrX 276684 276857 -176697283 - L1PA8 LINE L1 -14 6158 5987 1852 171 13 30 chrX 276857 277211 -176696929 - L1MA4 LINE L1 -54 6246 5896 2189 99 0 17 chrX 277348 277640 -176696500 + AluSg SINE Alu 24 310 0 1928 169 10 3 chrX 277716 278023 -176696117 + AluJb SINE Alu 1 309 -3 2438 94 0 3 chrX 278502 278810 -176695330 + AluSq SINE Alu 1 307 -6 1783 131 13 43 chrX 279002 279307 -176694833 - AluSx SINE Alu -16 296 1 1526 125 0 0 chrX 279307 279531 -176694609 + PABL_B LTR ERV1 444 667 0 2775 166 100 27 chrX 279867 280586 -176693554 + LTR1B LTR ERV1 1 754 -31 305 119 40 68 chrX 280633 280703 -176693437 + (TCTA)n Simple_repeat Simple_repeat 3 73 -101 2277 119 0 0 chrX 280703 280998 -176693142 + AluSg SINE Alu 2 296 -14 305 119 40 68 chrX 280998 281104 -176693036 + (TCTA)n Simple_repeat Simple_repeat 73 174 0 307 143 0 57 chrX 281113 281183 -176692957 + MLT2B1 LTR ERVL 455 520 0 2367 103 7 0 chrX 281387 281697 -176692443 + AluSq SINE Alu 1 312 -1 2201 125 3 3 chrX 281988 282299 -176691841 - AluSx SINE Alu -1 311 1 1543 177 7 35 chrX 282420 282541 -176691599 + AluJb SINE Alu 1 124 -188 1988 102 18 32 chrX 282541 282826 -176691314 - AluSx SINE Alu -9 303 23 1543 177 7 35 chrX 282826 282987 -176691153 + AluJb SINE Alu 124 275 -37 363 277 120 54 chrX 283013 283377 -176690763 + L1M4 LINE L1 981 3377 -1206 1635 165 4 0 chrX 283806 284061 -176690079 + AluJo SINE Alu 11 266 -46 1406 132 5 0 chrX 284209 284413 -176689727 - AluSq SINE Alu -108 205 1 443 252 25 69 chrX 284441 284600 -176689540 + MLT1C LTR MaLR 2 153 -314 339 156 0 16 chrX 284603 284667 -176689473 - MLT1A1 LTR MaLR -9 356 294 1007 225 76 31 chrX 284706 285028 -176689112 - MLT1A1 LTR MaLR -18 410 23 5595 54 1 0 chrX 285873 286557 -176687583 + L1PA7 LINE L1 5469 6153 -1 491 316 63 36 chrX 286903 287185 -176686955 - L1ME LINE L1 -4986 1617 1347 2307 119 3 0 chrX 287185 287497 -176686643 - AluSp SINE Alu 0 313 1 491 316 63 36 chrX 287497 287521 -176686619 - L1ME LINE L1 -5256 1347 1325 2526 133 23 14 chrX 287547 287977 -176686163 - MER57B LTR ERV1 0 434 1 2339 100 3 0 chrX 287988 288288 -176685852 + AluSp SINE Alu 5 305 -8 1496 86 4 78 chrX 288404 288636 -176685504 + AluSg/x SINE Alu 82 296 -14 870 132 0 0 chrX 288638 288759 -176685381 - AluJo/FLAM SINE Alu -189 123 3 2353 99 0 0 chrX 288862 289166 -176684974 + AluSg SINE Alu 1 304 -6 838 237 8 42 chrX 289172 289408 -176684732 - L1MC3 LINE L1 -421 7364 7137 198 56 0 56 chrX 289586 289622 -176684518 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2022 135 4 0 chrX 289622 289903 -176684237 - AluSx SINE Alu -1 318 2 22 56 0 0 chrX 290041 290077 -176684063 + AT_rich Low_complexity Low_complexity 1 36 0 2276 145 0 0 chrX 290249 290560 -176683580 - AluSx SINE Alu 0 312 2 413 301 77 86 chrX 290593 291268 -176682872 + L1ME LINE L1 3 671 -5399 827 172 0 13 chrX 291463 291690 -176682450 + (ATG)n Simple_repeat Simple_repeat 1 224 0 1083 130 0 8 chrX 291709 292074 -176682066 + (ATG)n Simple_repeat Simple_repeat 1 361 0 238 292 10 31 chrX 292808 292904 -176681236 - Charlie4 DNA MER1_type -1764 197 104 1886 164 0 3 chrX 293144 293430 -176680710 - AluSx SINE Alu -25 287 3 2416 87 0 13 chrX 293754 294066 -176680074 - AluSc SINE Alu -1 308 1 2155 94 0 11 chrX 294075 294402 -176679738 - AluSc SINE Alu 0 324 1 2392 107 0 0 chrX 294622 294932 -176679208 + AluSx SINE Alu 1 310 -2 2011 131 37 67 chrX 295712 296034 -176678106 + THE1B LTR MaLR 1 313 -51 2059 124 0 3 chrX 296034 296353 -176677787 + AluSx SINE Alu 1 318 0 2011 131 37 67 chrX 296353 296403 -176677737 + THE1B LTR MaLR 313 363 -1 309 189 33 56 chrX 296440 296530 -176677610 - L1MB3 LINE L1 -5 6178 6091 354 295 108 39 chrX 297064 297451 -176676689 + LTR33 LTR ERVL 89 502 -19 1833 126 52 37 chrX 297559 297908 -176676232 - THE1B LTR MaLR -10 354 1 241 164 343 0 chrX 298183 298256 -176675884 + MER4A LTR ERV1 1 98 -566 1563 141 9 29 chrX 298256 298589 -176675551 + MER4A LTR ERV1 261 645 -19 645 201 113 2 chrX 298610 298829 -176675311 + L1MC3 LINE L1 7535 7993 -2 2218 125 6 3 chrX 298921 299232 -176674908 + AluSx SINE Alu 1 312 0 311 202 0 8 chrX 299966 300087 -176674053 + CT-rich Low_complexity Low_complexity 1 119 0 1688 183 0 14 chrX 300091 300375 -176673765 - AluJo SINE Alu -32 280 1 1974 157 27 76 chrX 300799 301095 -176673045 - MSTA LTR MaLR -4 424 156 2219 115 0 0 chrX 301095 301390 -176672750 + AluSq SINE Alu 1 295 -18 1974 157 27 76 chrX 301390 301539 -176672601 - MSTA LTR MaLR -272 156 1 2283 97 0 10 chrX 301584 301884 -176672256 - AluY SINE Alu -14 297 1 877 173 0 0 chrX 302216 302349 -176671791 + FLAM_C SINE Alu 1 133 0 365 39 0 19 chrX 302373 302425 -176671715 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 309 248 31 23 chrX 302427 302556 -176671584 + (TTTG)n Simple_repeat Simple_repeat 3 132 0 231 215 69 0 chrX 302484 302628 -176671512 + (TG)n Simple_repeat Simple_repeat 2 155 0 * 2181 126 0 3 chrX 303462 303764 -176670376 + AluSx SINE Alu 1 301 -11 1064 243 7 95 chrX 304730 305147 -176668993 - MLT1E2 LTR MaLR -136 490 137 2041 112 0 0 chrX 305147 305449 -176668691 + AluSx SINE Alu 14 315 0 1064 243 7 95 chrX 305449 305572 -176668568 - MLT1E2 LTR MaLR -489 137 5 1017 154 0 0 chrX 305970 306119 -176668021 + AluJb SINE Alu 159 307 -5 249 57 0 0 chrX 306154 306189 -176667951 + (GA)n Simple_repeat Simple_repeat 2 36 0 324 0 0 0 chrX 306189 306225 -176667915 + (TG)n Simple_repeat Simple_repeat 2 37 0 1223 116 0 0 chrX 306521 306685 -176667455 + AluSg/x SINE Alu 137 300 -12 195 42 0 0 chrX 306794 306818 -176667322 + (CA)n Simple_repeat Simple_repeat 1 24 0 2177 104 10 3 chrX 306878 307177 -176666963 + AluSx SINE Alu 1 301 -11 2221 112 6 22 chrX 307355 307667 -176666473 + AluSq SINE Alu 1 307 -6 184 44 67 67 chrX 307674 307719 -176666421 + A-rich Low_complexity Low_complexity 2 46 0 3219 135 4 8 chrX 307921 308424 -176665716 - MER1A DNA MER1_type 0 529 29 1975 170 0 3 chrX 308681 308992 -176665148 - AluJo SINE Alu -2 310 1 579 67 0 0 chrX 309011 309086 -176665054 - Alu SINE Alu -6 305 231 1002 159 27 19 chrX 309087 309404 -176664736 + MLT2A2 LTR ERVL 229 447 -6 1198 207 30 30 chrX 309919 310218 -176663922 - MLT2D LTR ERVL 0 414 116 389 121 0 0 chrX 310219 310277 -176663863 + L1P4 LINE L1 5628 5685 -476 1887 109 0 12 chrX 310280 310527 -176663613 + AluSg SINE Alu 1 244 -66 1719 126 3 44 chrX 310591 310884 -176663256 - Tigger2a DNA MER2_type -153 281 1 307 194 97 32 chrX 310890 310983 -176663157 + L1MC4 LINE L1 6609 6707 -1335 1754 218 50 0 chrX 311842 312245 -176661895 + L1MA8 LINE L1 5620 6042 -249 703 221 0 0 chrX 312246 312386 -176661754 + FLAM_C SINE Alu 2 141 -2 1685 181 24 0 chrX 312388 312676 -176661464 + AluJo SINE Alu 1 295 -17 547 187 92 19 chrX 312695 312874 -176661266 + L1MA7 LINE L1 6032 6209 -91 402 192 29 19 chrX 312949 313053 -176661087 + L1MA7 LINE L1 6184 6288 -3 2478 81 0 0 chrX 313239 313537 -176660603 + AluSq SINE Alu 1 298 -15 841 167 0 32 chrX 313838 313994 -176660146 - AluJo/FRAM SINE Alu -28 284 134 1302 174 126 7 chrX 313994 314264 -176659876 - AluJo SINE Alu -10 302 1 198 0 0 0 chrX 314482 314504 -176659636 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1012 118 0 0 chrX 314670 314806 -176659334 + AluSp/q SINE Alu 160 295 -18 21 36 0 0 chrX 315047 315075 -176659065 + AT_rich Low_complexity Low_complexity 1 28 0 1551 202 57 9 chrX 315119 315450 -176658690 + MLT1A1 LTR MaLR 4 350 -15 988 106 0 0 chrX 315451 315583 -176658557 + AluSg/x SINE Alu 168 299 -11 1836 201 39 79 chrX 316456 316861 -176657279 + L1MA8 LINE L1 5620 6040 -251 698 204 0 0 chrX 316861 316993 -176657147 + FLAM_C SINE Alu 1 132 -1 1836 201 39 79 chrX 316993 317013 -176657127 + L1MA8 LINE L1 6040 6059 -232 1573 192 7 0 chrX 317013 317294 -176656846 + AluJo SINE Alu 11 293 -19 1836 201 39 79 chrX 317294 317463 -176656677 + L1MA8 LINE L1 6059 6191 -100 364 182 0 0 chrX 317594 317660 -176656480 + L1MA7 LINE L1 6184 6249 -42 332 94 19 0 chrX 317696 317749 -176656391 + (TA)n Simple_repeat Simple_repeat 1 54 0 2193 99 0 0 chrX 317971 318277 -176655863 + AluSq SINE Alu 1 306 0 1561 168 16 38 chrX 318553 318729 -176655411 - AluJo SINE Alu -4 308 141 1763 183 3 7 chrX 318729 319029 -176655111 - AluJb SINE Alu -13 299 1 1561 168 16 38 chrX 319029 319167 -176654973 - AluJo SINE Alu -171 141 1 808 220 0 24 chrX 319687 319855 -176654285 - AluJb SINE Alu -15 297 134 1511 146 89 14 chrX 319855 320136 -176654004 - AluJo SINE Alu -10 302 1 207 167 0 0 chrX 320331 320373 -176653767 + A-rich Low_complexity Low_complexity 1 42 0 229 180 22 67 chrX 320469 320558 -176653582 + MER58 DNA MER1_type 74 158 -2262 1108 88 0 0 chrX 320558 320695 -176653445 + AluSp/q SINE Alu 160 296 -17 1589 217 23 9 chrX 321002 321347 -176652793 + MLT1A1 LTR MaLR 1 350 -15 875 115 0 8 chrX 321348 321478 -176652662 + AluSg/x SINE Alu 170 298 -14 1943 148 3 22 chrX 323667 323985 -176650155 + AluSq SINE Alu 1 312 -1 2103 151 40 33 chrX 324231 324303 -176649837 + L1PA15 LINE L1 5758 5828 -337 2085 141 3 0 chrX 324303 324608 -176649532 + AluSp SINE Alu 1 306 -7 2103 151 40 33 chrX 324608 324933 -176649207 + L1PA15 LINE L1 5828 6158 -7 1878 150 24 0 chrX 324936 325229 -176648911 + AluSq SINE Alu 1 300 -13 2069 108 49 7 chrX 325839 326127 -176648013 + AluSx SINE Alu 1 300 -12 1818 200 43 86 chrX 328025 328424 -176645716 + L1MA9 LINE L1 5620 6034 -278 677 207 0 15 chrX 328424 328559 -176645581 + FLAM_C SINE Alu 1 133 0 1818 200 43 86 chrX 328559 328582 -176645558 + L1MA9 LINE L1 6034 6056 -256 1665 171 15 0 chrX 328582 328856 -176645284 + AluJo SINE Alu 11 288 -24 1818 200 43 86 chrX 328856 329073 -176645067 + L1MA9 LINE L1 6056 6215 -97 436 187 7 72 chrX 329112 329251 -176644889 + L1MA7 LINE L1 6161 6290 -1 2041 118 24 0 chrX 329435 329724 -176644416 + AluSq SINE Alu 1 296 -17 2193 158 20 27 chrX 329938 330010 -176644130 + L1PA15 LINE L1 5758 5829 -336 2129 125 10 0 chrX 330010 330306 -176643834 + AluSp SINE Alu 1 299 -14 2193 158 20 27 chrX 330306 330637 -176643503 + L1PA15 LINE L1 5829 6158 -7 1777 172 27 0 chrX 330640 330937 -176643203 + AluSq SINE Alu 1 305 -8 2162 113 3 26 chrX 331489 331799 -176642341 + AluSx SINE Alu 2 304 -8 1988 146 0 31 chrX 334252 334573 -176639567 + AluSq SINE Alu 1 311 -2 403 157 0 0 chrX 334797 334867 -176639273 + L1PA13 LINE L1 5759 5828 -335 1995 125 11 4 chrX 334868 335176 -176638964 + AluSp SINE Alu 1 310 0 1900 126 4 0 chrX 335710 335973 -176638167 + AluSx SINE Alu 1 264 -48 296 171 51 8 chrX 336089 336206 -176637934 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 440 241 89 0 chrX 336209 336321 -176637819 - MER20 DNA MER1_type -5 214 93 380 225 81 38 chrX 336435 336595 -176637545 + MER5A DNA MER1_type 23 189 0 783 163 0 23 chrX 337252 337381 -176636759 + FLAM_C SINE Alu 1 126 -17 1660 171 23 33 chrX 337393 337697 -176636443 + AluJo SINE Alu 1 301 -11 22 0 0 0 chrX 337891 337913 -176636227 + AT_rich Low_complexity Low_complexity 1 22 0 2227 105 3 0 chrX 338055 338359 -176635781 - AluSx SINE Alu -7 305 1 391 316 117 10 chrX 338500 338706 -176635434 + MLT1L LTR MaLR 344 571 -44 2256 86 0 7 chrX 338845 339149 -176634991 - AluSx SINE Alu -10 302 1 225 276 23 11 chrX 339150 339237 -176634903 - Charlie1 DNA MER1_type -32 2729 2642 2158 201 81 25 chrX 339271 339899 -176634241 - Charlie1 DNA MER1_type -94 2667 2005 1619 178 0 7 chrX 340003 340301 -176633839 + AluJo SINE Alu 1 296 -16 304 303 124 45 chrX 340302 340480 -176633660 - L2 LINE L2 -15 3298 3107 1519 174 10 34 chrX 341620 341918 -176632222 - AluJo SINE Alu -21 291 1 2214 74 0 3 chrX 341968 342277 -176631863 + AluSx SINE Alu 1 308 0 1794 170 0 7 chrX 342569 342869 -176631271 - AluJo SINE Alu -14 298 1 25 31 0 0 chrX 342932 342964 -176631176 + AT_rich Low_complexity Low_complexity 1 32 0 742 111 0 16 chrX 343853 343979 -176630161 + (TTCC)n Simple_repeat Simple_repeat 1 124 0 1513 170 62 4 chrX 343979 344255 -176629885 - AluJo SINE Alu -20 292 1 1944 142 70 17 chrX 344391 344735 -176629405 - Tigger2a DNA MER2_type -72 362 1 198 0 0 0 chrX 345233 345255 -176628885 + (TG)n Simple_repeat Simple_repeat 2 23 0 241 154 19 39 chrX 346762 346814 -176627326 + L1M4c LINE L1 2440 2490 -3894 307 153 68 0 chrX 346857 346916 -176627224 + L1MA9 LINE L1 6250 6312 0 455 63 0 0 chrX 347035 347098 -176627042 + L1MA9 LINE L1 6250 6312 0 353 204 28 106 chrX 348053 348195 -176625945 - MER96B DNA MER1_type? -285 132 2 206 265 0 0 chrX 349025 349074 -176625066 + T-rich Low_complexity Low_complexity 1 49 0 295 215 0 51 chrX 349077 349156 -176624984 - U13 snRNA snRNA -2 102 28 2123 113 0 13 chrX 349160 349470 -176624670 + AluSx SINE Alu 1 306 -6 544 114 0 0 chrX 349788 349867 -176624273 - MADE1 DNA Mariner 0 80 2 243 0 0 0 chrX 350100 350127 -176624013 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2134 108 0 0 chrX 350134 350422 -176623718 - AluSx SINE Alu -24 288 1 728 181 0 0 chrX 350425 350541 -176623599 - FLAM_A SINE Alu -15 127 12 1380 285 85 21 chrX 351019 351499 -176622641 + MLT1H LTR MaLR 39 549 0 224 366 74 25 chrX 351500 351702 -176622438 + L2 LINE L2 2467 2678 -636 407 241 107 0 chrX 352896 353008 -176621132 - L2 LINE L2 -5 3308 3185 476 298 24 6 chrX 353182 353350 -176620790 + (CA)n Simple_repeat Simple_repeat 2 172 0 205 167 17 17 chrX 353404 353464 -176620676 + (CA)n Simple_repeat Simple_repeat 1 60 0 336 367 6 22 chrX 353497 353677 -176620463 + (CATATA)n Simple_repeat Simple_repeat 3 179 0 344 360 12 6 chrX 353918 354079 -176620061 + (CA)n Simple_repeat Simple_repeat 1 162 0 27 0 0 0 chrX 354689 354716 -176619424 + AT_rich Low_complexity Low_complexity 1 27 0 1471 173 23 27 chrX 354727 355028 -176619112 + AluJo SINE Alu 1 300 -12 2268 157 3 9 chrX 355147 355537 -176618603 + MLT1B LTR MaLR 4 467 0 1267 187 4 0 chrX 355537 355762 -176618378 + MLT1B LTR MaLR 158 383 -7 1877 128 9 31 chrX 356541 356641 -176617499 + AluJo SINE Alu 1 102 -210 3189 158 19 95 chrX 356641 356913 -176617227 + LTR8 LTR ERV1 2 293 -398 1998 138 0 0 chrX 356913 357224 -176616916 + AluSx SINE Alu 1 311 -1 3189 158 19 95 chrX 357224 357698 -176616442 + LTR8 LTR ERV1 293 691 0 1877 128 9 31 chrX 357698 357916 -176616224 + AluJo SINE Alu 102 312 0 2097 216 31 103 chrX 357980 358599 -176615541 + LTR8 LTR ERV1 1 663 -28 1721 176 0 7 chrX 358599 358900 -176615240 + AluJo SINE Alu 1 299 -13 3346 138 17 87 chrX 358908 359049 -176615091 + LTR9 LTR ERV1 1 150 -462 2589 26 3 0 chrX 359049 359356 -176614784 + AluY SINE Alu 1 308 -3 3346 138 17 87 chrX 359356 359872 -176614268 + LTR9 LTR ERV1 150 612 0 2097 216 31 103 chrX 359872 359988 -176614152 + LTR8 LTR ERV1 670 691 0 1830 133 44 3 chrX 360057 360350 -176613790 - AluJb SINE Alu -7 305 1 1715 171 91 23 chrX 360566 360952 -176613188 + LTR49 LTR ERV1 1 412 -183 1561 127 4 8 chrX 360974 361210 -176612930 + L1PA15 LINE L1 5718 5952 -213 1034 161 174 58 chrX 361210 361520 -176612620 + MER4A LTR ERV1 1 346 -318 240 76 0 197 chrX 361525 361591 -176612549 + MER4A LTR ERV1 306 358 -306 371 145 40 13 chrX 361601 361677 -176612463 + MER4C LTR ERV1 279 356 -109 1473 108 0 0 chrX 361757 361969 -176612171 + L1PA15 LINE L1 5949 6160 -5 851 209 25 0 chrX 361969 362132 -176612008 + LTR29 LTR ERV1 456 622 0 225 94 0 0 chrX 362154 362186 -176611954 + (A)n Simple_repeat Simple_repeat 1 32 0 1017 89 0 0 chrX 362250 362385 -176611755 + AluSq/x SINE Alu 1 135 -177 2163 118 3 0 chrX 362385 362691 -176611449 + AluSx SINE Alu 1 307 -5 2087 106 0 52 chrX 362977 363306 -176610834 - AluJo SINE Alu 0 312 1 354 98 0 0 chrX 363446 363497 -176610643 + (TG)n Simple_repeat Simple_repeat 1 51 0 340 283 18 53 chrX 364546 364659 -176609481 - L1MC4 LINE L1 -1339 6703 6595 324 296 104 52 chrX 364653 364923 -176609217 + L1ME4a LINE L1 5684 5967 -154 * 332 179 0 64 chrX 364865 364943 -176609197 - L1MCa LINE L1 -4359 2067 1995 325 222 33 67 chrX 364925 365015 -176609125 + L1MC4 LINE L1 6614 6700 -1342 * 241 213 27 7 chrX 365017 365100 -176609040 + (TA)n Simple_repeat Simple_repeat 1 90 -63 2151 112 0 0 chrX 365100 365403 -176608737 + AluSg1 SINE Alu 1 303 -6 241 213 27 7 chrX 365403 365469 -176608671 + (TA)n Simple_repeat Simple_repeat 90 153 0 307 301 0 43 chrX 365518 365611 -176608529 + L1MC4 LINE L1 6615 6703 -1339 * 308 295 0 42 chrX 365588 365683 -176608457 + L1MC4 LINE L1 6615 6705 -1337 309 231 18 4 chrX 365686 365917 -176608223 + (TA)n Simple_repeat Simple_repeat 1 234 0 388 271 6 35 chrX 365925 366095 -176608045 + (CATATA)n Simple_repeat Simple_repeat 2 166 0 1576 122 52 15 chrX 367881 368152 -176605988 + AluJo SINE Alu 30 310 -2 1476 163 3 91 chrX 368356 368473 -176605667 + AluJb SINE Alu 1 127 -185 312 27 0 0 chrX 368473 368510 -176605630 + (CA)n Simple_repeat Simple_repeat 2 38 0 1476 163 3 91 chrX 368510 368723 -176605417 + AluJb SINE Alu 127 302 -10 1997 119 3 32 chrX 368743 369055 -176605085 - AluSx SINE Alu -9 303 1 315 337 49 33 chrX 369299 369483 -176604657 - L2 LINE L2 -27 3286 3100 1799 106 14 28 chrX 370248 370530 -176603610 - AluSx SINE Alu -23 289 12 2082 124 3 0 chrX 370530 370837 -176603303 - AluSx SINE Alu -4 308 1 1211 186 34 90 chrX 370875 371197 -176602943 + AluJo SINE Alu 1 304 -8 314 302 22 36 chrX 371200 371339 -176602801 + L1MDa LINE L1 2367 2503 -4037 1435 209 0 16 chrX 371806 372112 -176602028 - AluJo SINE Alu -11 301 1 2182 106 0 0 chrX 372190 372483 -176601657 - AluSq SINE Alu -20 293 1 181 196 0 98 chrX 372607 372658 -176601482 + L2 LINE L2 3000 3045 -227 967 137 6 12 chrX 372958 373119 -176601021 - FRAM SINE Alu -16 160 1 2227 103 0 0 chrX 373129 373431 -176600709 - AluSq SINE Alu -11 302 1 705 93 9 0 chrX 373701 373809 -176600331 - MLT1B LTR MaLR -123 267 159 1368 140 5 11 chrX 373810 374045 -176600095 - MLT1B LTR MaLR 0 467 158 2240 155 11 12 chrX 374045 374436 -176599704 - MLT1B LTR MaLR 0 467 1 2154 104 0 26 chrX 374488 374795 -176599345 + AluSx SINE Alu 1 299 -13 3933 111 21 79 chrX 375471 376176 -176597964 + MER4A LTR ERV1 1 664 0 2046 107 43 0 chrX 376456 376755 -176597385 - AluSx SINE Alu 0 312 1 294 50 0 0 chrX 377039 377079 -176597061 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 1958 127 3 0 chrX 377079 377363 -176596777 - AluSx SINE Alu -27 285 1 304 302 19 9 chrX 377634 377740 -176596400 + CT-rich Low_complexity Low_complexity 2 108 0 2957 177 23 76 chrX 377977 378704 -176595436 + LTR8 LTR ERV1 3 691 0 4653 85 41 0 chrX 379361 379995 -176594145 - PABL_A LTR ERV1 0 660 1 661 111 0 10 chrX 380033 380132 -176594008 + MER4A LTR ERV1 1 98 -566 445 189 7 45 chrX 380132 380280 -176593860 + MER4A LTR ERV1 261 461 -203 1933 115 35 0 chrX 380320 380608 -176593532 - AluSg SINE Alu -12 298 1 23 33 0 0 chrX 380616 380646 -176593494 + AT_rich Low_complexity Low_complexity 1 30 0 227 30 0 30 chrX 380840 380873 -176593267 + (TTTTC)n Simple_repeat Simple_repeat 4 35 0 1047 186 4 75 chrX 381021 381109 -176593031 - MER2 DNA MER2_type -135 210 117 2080 123 0 0 chrX 381109 381409 -176592731 + AluSx SINE Alu 1 300 -12 1047 186 4 75 chrX 381409 381546 -176592594 - MER2 DNA MER2_type -228 117 1 189 0 0 0 chrX 381646 381667 -176592473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 835 154 28 0 chrX 381707 381850 -176592290 - AluSg/x SINE Alu -13 299 153 278 246 67 22 chrX 381851 381985 -176592155 - L1M4 LINE L1 -1031 5115 4976 1918 111 42 7 chrX 381992 382280 -176591860 + AluSx SINE Alu 1 298 -14 1890 138 13 10 chrX 382484 382795 -176591345 - AluJo SINE Alu 0 312 1 1072 54 0 0 chrX 383148 383277 -176590863 - AluY SINE Alu -182 129 1 1069 175 0 0 chrX 383434 383623 -176590517 - AluJb SINE Alu -1 311 123 1522 57 5 14 chrX 384185 384394 -176589746 - AluYa5 SINE Alu -6 305 99 4035 71 18 7 chrX 384394 384946 -176589194 + LTR6B LTR ERV1 1 558 0 855 40 0 0 chrX 384947 385048 -176589092 - AluYa5 SINE Alu -210 101 1 2286 109 0 0 chrX 385070 385382 -176588758 - AluSx SINE Alu 0 312 1 3784 194 19 4 chrX 385415 386168 -176587972 - L1MB5 LINE L1 -6 6168 5405 198 71 0 0 chrX 386719 386747 -176587393 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1140 114 0 0 chrX 387155 387201 -176586939 + (TTCC)n Simple_repeat Simple_repeat 1 222 0 1140 114 0 0 chrX 387201 387377 -176586763 + (TTCC)n Simple_repeat Simple_repeat 2 177 0 1179 112 0 0 chrX 387395 387574 -176586566 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 415 216 11 28 chrX 387817 387998 -176586142 + CT-rich Low_complexity Low_complexity 3 180 0 23 54 0 0 chrX 388009 388046 -176586094 + AT_rich Low_complexity Low_complexity 1 37 0 2668 204 31 4 chrX 388323 388868 -176585272 - L1MB5 LINE L1 0 6174 5615 1674 190 3 31 chrX 389902 390223 -176583917 + AluJo SINE Alu 1 312 0 1289 191 22 4 chrX 390653 390925 -176583215 - L1MB5 LINE L1 -89 6085 5809 418 247 159 12 chrX 391071 391241 -176582899 + MLT1J2 LTR MaLR 256 450 0 228 378 56 14 chrX 391517 391660 -176582480 - MIR SINE MIR -11 251 103 2266 131 0 0 chrX 392258 392570 -176581570 - AluSx SINE Alu 0 312 1 3015 143 18 64 chrX 393938 394191 -176579949 + MER39B LTR ERV1 2 265 -388 2619 52 0 3 chrX 394191 394498 -176579642 + AluY SINE Alu 1 306 -5 3015 143 18 64 chrX 394498 394617 -176579523 + MER39B LTR ERV1 265 388 -265 2462 73 0 0 chrX 394617 394905 -176579235 + AluSc SINE Alu 1 288 -21 3015 143 18 64 chrX 394905 395186 -176578954 + MER39B LTR ERV1 388 626 -27 396 59 0 0 chrX 395639 395690 -176578450 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 1944 147 0 17 chrX 395690 395990 -176578150 - AluSg SINE Alu -15 295 1 2090 143 0 0 chrX 395990 396297 -176577843 - AluSx SINE Alu -5 307 1 3396 147 11 0 chrX 396615 397158 -176576982 - MER41A LTR ERV1 0 554 6 3172 166 46 88 chrX 397163 397742 -176576398 - LTR39 LTR ERV1 -8 775 238 1960 135 10 10 chrX 397742 398030 -176576110 + AluSx SINE Alu 1 288 -24 3172 166 46 88 chrX 398030 398259 -176575881 - LTR39 LTR ERV1 -545 238 1 334 278 21 10 chrX 399013 399110 -176575030 - MER5A DNA MER1_type -86 103 6 1235 178 9 0 chrX 399119 399349 -176574791 - MLT1B LTR MaLR -1 389 158 1093 175 5 24 chrX 399349 399586 -176574554 - MLT1B LTR MaLR 0 467 159 2178 167 8 13 chrX 399587 399976 -176574164 - MLT1B LTR MaLR 0 390 4 1880 195 4 30 chrX 400005 400299 -176573841 - MLT1B LTR MaLR 0 396 111 2307 69 33 33 chrX 400299 400602 -176573538 - AluY SINE Alu -8 303 1 1880 195 4 30 chrX 400602 400711 -176573429 - MLT1B LTR MaLR -285 111 1 1014 97 0 156 chrX 400864 401050 -176573090 - AluSg/x SINE Alu -18 294 138 737 254 46 0 chrX 401748 401945 -176572195 - MER20 DNA MER1_type 0 219 14 602 149 19 7 chrX 401963 402117 -176572023 + (TAGA)n Simple_repeat Simple_repeat 2 157 0 327 194 37 37 chrX 402128 402236 -176571904 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 859 228 47 9 chrX 402253 402464 -176571676 - MER20 DNA MER1_type 0 219 1 346 194 62 131 chrX 402650 402810 -176571330 + MER5A DNA MER1_type 41 189 0 2348 125 0 0 chrX 403054 403366 -176570774 - AluSx SINE Alu 0 312 1 4046 179 80 9 chrX 403601 404372 -176569768 + LTR1B LTR ERV1 1 826 0 1030 187 41 8 chrX 404458 404704 -176569436 - L1MA4 LINE L1 -1 6299 6046 1036 109 14 0 chrX 405000 405147 -176568993 - L1PA10 LINE L1 0 6168 6020 3654 124 26 0 chrX 405407 405947 -176568193 + MER41A LTR ERV1 1 554 0 270 280 17 68 chrX 406075 406100 -176568040 + MIR SINE MIR 111 136 -126 3485 69 21 5 chrX 406100 406537 -176567603 + MLT2A1 LTR ERVL 1 444 0 270 280 17 68 chrX 406537 406629 -176567511 + MIR SINE MIR 136 222 -40 1545 222 0 10 chrX 406660 406971 -176567169 + AluJo SINE Alu 5 312 0 1464 161 3 89 chrX 406971 407180 -176566960 - MER47A DNA MER2_type -2016 307 136 2018 128 24 14 chrX 407180 407477 -176566663 + AluSq SINE Alu 1 300 -13 1464 161 3 89 chrX 407477 407603 -176566537 - MER47A DNA MER2_type -2187 136 1 2296 113 0 0 chrX 409934 410226 -176563914 - AluSx SINE Alu -18 294 3 504 158 0 0 chrX 410284 410379 -176563761 + (TG)n Simple_repeat Simple_repeat 1 95 0 852 230 0 0 chrX 410492 410688 -176563452 + L1MB5 LINE L1 5810 6005 -169 524 191 0 9 chrX 410691 410796 -176563344 + MLT1C LTR MaLR 1 104 -363 440 80 0 148 chrX 410801 410835 -176563305 + MADE1 DNA Mariner 6 21 -59 2275 118 0 0 chrX 410835 411131 -176563009 - AluSg SINE Alu -14 296 1 440 80 0 148 chrX 411131 411184 -176562956 + MADE1 DNA Mariner 21 80 0 1003 176 131 0 chrX 411186 411407 -176562733 + MLT1C LTR MaLR 105 354 -113 2048 117 0 21 chrX 411408 411690 -176562450 + AluSx SINE Alu 1 276 -36 794 155 8 24 chrX 411690 411951 -176562189 + GA-rich Low_complexity Low_complexity 1 257 0 490 254 0 30 chrX 411951 412085 -176562055 + MLT1C LTR MaLR 338 467 0 597 189 13 75 chrX 412099 412215 -176561925 + L1MB5 LINE L1 6026 6131 -43 1793 115 58 0 chrX 412215 412475 -176561665 + AluSx SINE Alu 22 296 -16 597 189 13 75 chrX 412475 412517 -176561623 + L1MB5 LINE L1 6131 6174 0 694 251 52 22 chrX 412662 412876 -176561264 - MER58B DNA MER1_type -2079 341 71 2095 134 3 6 chrX 412876 413189 -176560951 + AluSx SINE Alu 1 312 0 694 251 52 22 chrX 413189 413258 -176560882 - MER58B DNA MER1_type -2349 71 6 2261 124 0 6 chrX 413653 413967 -176560173 + AluSx SINE Alu 1 312 0 3378 80 0 13 chrX 414174 414624 -176559516 + MLT2A1 LTR ERVL 1 444 0 2180 125 3 28 chrX 415257 415577 -176558563 + AluSx SINE Alu 1 312 0 225 0 0 0 chrX 415595 415620 -176558520 + (CA)n Simple_repeat Simple_repeat 2 26 0 295 294 50 0 chrX 415851 415970 -176558170 + L1M4 LINE L1 3851 3975 -2171 2468 65 0 19 chrX 416038 416346 -176557794 - AluSc SINE Alu -7 302 1 1168 95 0 0 chrX 416740 416888 -176557252 + AluSc SINE Alu 1 148 -161 276 111 0 0 chrX 418369 418414 -176555726 + (A)n Simple_repeat Simple_repeat 1 45 0 2427 90 0 0 chrX 418735 419035 -176555105 + AluSx SINE Alu 1 300 -12 184 271 21 0 chrX 419168 419216 -176554924 - L2 LINE L2 -4 3309 3261 2263 81 0 52 chrX 420933 421260 -176552880 - AluSp SINE Alu 0 313 2 2009 138 0 13 chrX 421302 421607 -176552533 + AluSx SINE Alu 2 302 -10 1725 141 6 72 chrX 421886 422205 -176551935 + AluJo SINE Alu 1 298 -14 1728 95 9 0 chrX 422318 422540 -176551600 - AluSg/x SINE Alu -17 293 70 2375 103 6 3 chrX 423259 423570 -176550570 + AluSx SINE Alu 1 312 0 2337 97 7 3 chrX 423580 423888 -176550252 + AluSc SINE Alu 1 309 0 2348 91 0 0 chrX 424155 424480 -176549660 - AluY SINE Alu 0 325 1 2624 71 0 0 chrX 424824 425135 -176549005 - AluY SINE Alu 0 311 1 530 289 168 43 chrX 426206 426449 -176547691 + HAL1 LINE L1 881 1092 -3314 2397 116 0 0 chrX 426449 426759 -176547381 + AluSx SINE Alu 1 310 -2 530 289 168 43 chrX 426759 426937 -176547203 + HAL1 LINE L1 1092 3227 -1179 578 218 12 18 chrX 427887 428234 -176545906 + GA-rich Low_complexity Low_complexity 1 344 0 376 226 33 13 chrX 428247 428615 -176545525 + GA-rich Low_complexity Low_complexity 1 375 0 383 41 0 0 chrX 428957 429006 -176545134 - MADE1 DNA Mariner -2 78 30 294 77 19 58 chrX 429001 429053 -176545087 + AluJo SINE Alu 93 142 -160 * 301 121 0 121 chrX 429054 429120 -176545020 - AluJo SINE Alu -151 151 94 * 354 80 0 0 chrX 429116 429166 -176544974 + MADE1 DNA Mariner 30 79 -1 2405 79 7 3 chrX 429442 429747 -176544393 - AluSx SINE Alu -6 306 1 1606 111 0 9 chrX 430095 430312 -176543828 - AluSg/x SINE Alu 0 309 95 21 0 0 0 chrX 430559 430580 -176543560 + AT_rich Low_complexity Low_complexity 1 21 0 2349 101 0 0 chrX 430583 430879 -176543261 + AluY SINE Alu 1 296 -15 1914 161 0 3 chrX 430883 431182 -176542958 - AluJo SINE Alu -12 300 3 923 127 11 14 chrX 431439 431730 -176542410 + THE1C LTR MaLR 1 375 0 2118 110 20 17 chrX 431919 432220 -176541920 + AluSx SINE Alu 1 302 -10 2255 109 30 0 chrX 432559 432861 -176541279 + AluSx SINE Alu 1 311 -1 2317 97 3 0 chrX 433278 433576 -176540564 + AluSq SINE Alu 1 299 -14 2498 72 0 10 chrX 433896 434202 -176539938 - AluY SINE Alu -8 303 1 2085 118 3 0 chrX 435142 435448 -176538692 + AluSx SINE Alu 1 312 0 22 0 0 0 chrX 435623 435645 -176538495 + AT_rich Low_complexity Low_complexity 1 22 0 1674 192 3 10 chrX 435650 435941 -176538199 - AluJo SINE Alu -23 289 1 2127 105 0 33 chrX 435974 436142 -176537998 - AluSx SINE Alu -17 295 140 2115 124 24 0 chrX 436142 436432 -176537708 - AluSx SINE Alu -15 297 1 2127 105 0 33 chrX 436432 436568 -176537572 - AluSx SINE Alu -172 140 1 546 155 0 0 chrX 437014 437111 -176537029 + CT-rich Low_complexity Low_complexity 4 100 0 1465 118 0 15 chrX 438512 438736 -176535404 + AluSq SINE Alu 82 302 0 22 0 0 0 chrX 438912 438934 -176535206 + AT_rich Low_complexity Low_complexity 1 22 0 779 333 79 26 chrX 438996 439459 -176534681 + L1ME4a LINE L1 5481 5973 -148 1701 193 0 37 chrX 439459 439781 -176534359 + AluJo SINE Alu 1 310 -2 779 333 79 26 chrX 439781 439813 -176534327 + L1ME4a LINE L1 5973 6002 -119 2347 114 0 3 chrX 440131 440439 -176533701 + AluSx SINE Alu 3 309 -3 674 209 40 57 chrX 440922 441099 -176533041 - MER45A DNA AcHobo -4 174 1 209 232 20 71 chrX 441577 441676 -176532464 + GA-rich Low_complexity Low_complexity 2 95 0 2558 74 0 3 chrX 442386 442696 -176531444 + AluY SINE Alu 1 309 -2 1994 139 36 0 chrX 442824 443126 -176531014 + AluSq SINE Alu 1 313 0 2256 113 0 3 chrX 443688 443990 -176530150 - AluSx SINE Alu -11 301 1 1212 154 45 136 chrX 444388 444718 -176529422 + AluJo SINE Alu 1 300 -2 2350 103 0 0 chrX 444738 445038 -176529102 + AluSg SINE Alu 1 300 -10 775 231 138 7 chrX 445048 445353 -176528787 + MLT1C LTR MaLR 1 361 -144 1317 254 58 27 chrX 445368 445816 -176528324 + MLT1C LTR MaLR 6 467 0 650 226 6 19 chrX 446202 446361 -176527779 + Tigger1 DNA MER2_type 1 157 -2261 * 798 155 139 0 chrX 446354 446541 -176527599 + Tigger1 DNA MER2_type 2206 2418 0 21 36 0 0 chrX 446668 446696 -176527444 + AT_rich Low_complexity Low_complexity 1 28 0 275 243 108 0 chrX 446699 446810 -176527330 + MER69 DNA AcHobo 2313 2435 -91 365 274 30 7 chrX 447501 447636 -176526504 + (TG)n Simple_repeat Simple_repeat 2 139 0 512 249 17 22 chrX 447647 447828 -176526312 + (TG)n Simple_repeat Simple_repeat 1 180 0 207 216 21 21 chrX 447830 447927 -176526213 + (TATG)n Simple_repeat Simple_repeat 4 100 0 * 433 232 0 11 chrX 447914 448095 -176526045 + (TG)n Simple_repeat Simple_repeat 2 180 0 450 326 6 6 chrX 448132 448310 -176525830 + (TG)n Simple_repeat Simple_repeat 2 179 0 2240 163 21 74 chrX 448645 449003 -176525137 - L1MA8 LINE L1 -111 6180 5805 2228 99 17 7 chrX 449003 449297 -176524843 - AluSx SINE Alu -15 297 1 2240 163 21 74 chrX 449297 449361 -176524779 - L1MA8 LINE L1 -486 5805 5739 358 247 0 0 chrX 449361 449454 -176524686 - L1MB8 LINE L1 -3 6175 6083 2240 163 21 74 chrX 449454 449587 -176524553 - L1MA8 LINE L1 -552 5739 5653 319 213 11 85 chrX 449606 449700 -176524440 - L1MC4 LINE L1 -1339 6703 6617 306 227 10 82 chrX 449719 449816 -176524324 - L1MC4 LINE L1 -1339 6703 6614 300 239 44 62 chrX 449752 449865 -176524275 + L1MC3 LINE L1 6569 6679 -1106 * 2353 99 0 7 chrX 449884 450187 -176523953 + AluSg SINE Alu 1 301 -9 422 363 0 11 chrX 451298 451480 -176522660 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 296 52 23 chrX 451495 451667 -176522473 + (CATG)n Simple_repeat Simple_repeat 3 179 0 * 337 368 0 16 chrX 451577 451810 -176522330 + (TG)n Simple_repeat Simple_repeat 1 229 0 184 111 44 22 chrX 451810 451855 -176522285 + (CATG)n Simple_repeat Simple_repeat 3 48 0 1955 163 0 7 chrX 453684 454004 -176520136 - AluSx SINE Alu 0 312 4 1325 89 6 0 chrX 454056 454224 -176519916 + AluSg/x SINE Alu 122 290 -22 25 0 0 0 chrX 454224 454249 -176519891 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 3 chrX 454666 454977 -176519163 - AluY SINE Alu -1 310 1 859 235 46 42 chrX 455305 455590 -176518550 + L1MA8 LINE L1 6004 6289 -2 1866 159 0 3 chrX 456040 456330 -176517810 + AluJb SINE Alu 1 289 -23 1992 153 36 0 chrX 456332 456633 -176517507 + AluSx SINE Alu 1 312 0 257 283 35 55 chrX 456907 457052 -176517088 + MER5A DNA MER1_type 22 163 -26 414 0 0 0 chrX 457403 457449 -176516691 + (CA)n Simple_repeat Simple_repeat 2 47 0 2103 261 45 24 chrX 457475 457966 -176516174 + MER82 DNA MER2_type 9 488 -165 2285 91 3 23 chrX 457966 458274 -176515866 + AluSx SINE Alu 1 302 -10 2103 261 45 24 chrX 458274 458314 -176515826 + MER82 DNA MER2_type 488 526 -127 896 153 0 13 chrX 458314 458471 -176515669 + L1PA14 LINE L1 6007 6161 0 2103 261 45 24 chrX 458471 458566 -176515574 + MER82 DNA MER2_type 526 649 -4 348 304 0 65 chrX 458776 458914 -176515226 + L2 LINE L2 2951 3079 -193 520 247 96 14 chrX 458980 459126 -176515014 + MER5B DNA MER1_type 6 163 -15 533 244 0 6 chrX 459761 459933 -176514207 + (TGGG)n Simple_repeat Simple_repeat 2 172 0 894 208 0 6 chrX 459950 460270 -176513870 + (TGGA)n Simple_repeat Simple_repeat 1 317 0 527 195 18 6 chrX 460284 460453 -176513687 + (TGGA)n Simple_repeat Simple_repeat 3 173 0 954 156 0 0 chrX 460469 460720 -176513420 + (TGGA)n Simple_repeat Simple_repeat 1 251 0 218 345 86 0 chrX 461005 461121 -176513019 + MIR SINE MIR 66 191 -71 1467 197 52 7 chrX 461298 461587 -176512553 + AluSx SINE Alu 1 302 -10 2272 118 0 0 chrX 461587 461892 -176512248 + AluSg SINE Alu 1 305 -5 318 87 0 0 chrX 461895 461941 -176512199 + (GAAAA)n Simple_repeat Simple_repeat 5 50 0 1093 176 0 11 chrX 461943 462131 -176512009 + AluJo SINE Alu 118 303 -9 1244 208 0 0 chrX 462371 462578 -176511562 + AluJo SINE Alu 84 290 -22 1741 172 57 7 chrX 462586 462883 -176511257 + AluJo SINE Alu 1 312 0 2096 101 0 7 chrX 464386 464664 -176509476 + AluSq SINE Alu 35 310 -3 1442 206 77 3 chrX 464748 465112 -176509028 + MER34B LTR ERV1 148 538 -27 2046 136 0 0 chrX 465131 465417 -176508723 + AluSx SINE Alu 11 296 -16 1192 185 20 0 chrX 465428 465628 -176508512 + AluJo SINE Alu 86 289 -23 1316 175 5 0 chrX 465635 465841 -176508299 + AluSg/x SINE Alu 86 292 -20 2093 124 0 7 chrX 466287 466586 -176507554 - AluSx SINE Alu -15 297 1 602 271 15 20 chrX 467038 467241 -176506899 - MER20 DNA MER1_type 0 219 18 408 103 10 113 chrX 467834 467931 -176506209 + AluSc SINE Alu 221 307 -2 22 35 0 0 chrX 469836 469865 -176504275 + GC_rich Low_complexity Low_complexity 1 29 0 2316 97 7 0 chrX 471053 471361 -176502779 + AluSx SINE Alu 1 310 -2 2402 149 36 24 chrX 471363 471943 -176502197 - MER4E LTR ERV1 -7 759 19 1888 133 0 14 chrX 471943 472222 -176501918 - AluSx SINE Alu -1 311 37 2402 149 36 24 chrX 472222 472242 -176501898 - MER4E LTR ERV1 -747 19 1 4324 47 4 25 chrX 472335 472371 -176501769 - L1PA7 LINE L1 -2 6152 6117 2584 50 0 10 chrX 472371 472672 -176501468 + AluY SINE Alu 1 298 -13 4324 47 4 25 chrX 472672 473190 -176500950 - L1PA7 LINE L1 -37 6117 5610 1947 148 34 0 chrX 474520 474818 -176499322 - AluSq SINE Alu -5 308 1 450 176 0 0 chrX 474927 475012 -176499128 + (CA)n Simple_repeat Simple_repeat 1 85 0 2500 103 0 0 chrX 475261 475573 -176498567 + AluSx SINE Alu 1 312 0 1925 139 43 10 chrX 475603 475904 -176498236 + AluSx SINE Alu 1 311 -1 892 118 0 7 chrX 475973 476109 -176498031 + MSTA LTR MaLR 1 135 -293 391 106 152 0 chrX 476109 476175 -176497965 + MSTA LTR MaLR 353 428 0 1241 81 81 11 chrX 476175 476234 -176497906 + Charlie3 DNA MER1_type 2509 2562 -144 261 0 0 0 chrX 476234 476263 -176497877 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1241 81 81 11 chrX 476263 476388 -176497752 + Charlie3 DNA MER1_type 2562 2706 0 306 298 48 0 chrX 476421 476505 -176497635 + L1MC3 LINE L1 7163 7250 -535 726 172 0 29 chrX 476510 476756 -176497384 + (TGGA)n Simple_repeat Simple_repeat 1 238 0 2309 95 0 10 chrX 476823 477127 -176497013 - AluY SINE Alu -10 301 1 2498 87 3 0 chrX 477127 477436 -176496704 - AluSp SINE Alu -2 311 1 752 203 0 0 chrX 477793 477926 -176496214 - FLAM_A SINE Alu 0 133 1 1242 168 33 5 chrX 477969 478183 -176495957 - AluJo SINE Alu -92 220 1 1323 217 91 29 chrX 478620 478970 -176495170 + MLT1A2 LTR MaLR 1 372 -2 226 267 13 40 chrX 479108 479183 -176494957 + MLT1J2 LTR MaLR 58 130 -320 383 299 7 95 chrX 479190 479494 -176494646 + MLT1J LTR MaLR 171 447 -64 624 263 10 0 chrX 479690 479986 -176494154 + (TGGA)n Simple_repeat Simple_repeat 1 299 0 801 213 0 0 chrX 480036 480311 -176493829 + (TGGA)n Simple_repeat Simple_repeat 1 275 0 630 208 0 0 chrX 480332 480486 -176493654 + (TGGA)n Simple_repeat Simple_repeat 4 157 0 231 125 0 0 chrX 481467 481507 -176492633 + (CA)n Simple_repeat Simple_repeat 1 40 0 2264 105 3 3 chrX 481632 481936 -176492204 + AluSg SINE Alu 1 304 -6 593 283 112 0 chrX 481944 482131 -176492009 - MLT1G1 LTR MaLR -381 214 7 180 355 0 0 chrX 482491 482553 -176491587 - L2 LINE L2 -218 3054 2993 1371 192 12 0 chrX 482692 482932 -176491208 + AluJo SINE Alu 54 296 -16 1035 261 94 12 chrX 482950 483280 -176490860 + MLT1H LTR MaLR 185 541 -8 239 229 0 0 chrX 484071 484119 -176490021 + (TG)n Simple_repeat Simple_repeat 1 48 0 2242 109 13 0 chrX 484263 484565 -176489575 + AluSx SINE Alu 1 306 -6 2463 96 0 0 chrX 485160 485472 -176488668 + AluSx SINE Alu 1 312 0 1919 141 12 6 chrX 485617 485936 -176488204 + L1PB2 LINE L1 5521 5841 -310 1695 119 4 8 chrX 486046 486297 -176487843 - L1P4 LINE L1 -575 5593 5344 353 221 0 0 chrX 486298 486375 -176487765 - MER4D LTR ERV1 -512 360 284 1949 145 20 7 chrX 486379 486683 -176487457 - AluSx SINE Alu -4 308 1 892 126 33 44 chrX 486687 486870 -176487270 - Tigger7 DNA MER2_type -92 2495 2315 1696 153 78 54 chrX 486926 486993 -176487147 - MSTA LTR MaLR -5 423 359 2120 85 11 7 chrX 486993 487274 -176486866 + AluSx SINE Alu 1 282 -30 180 0 0 0 chrX 487277 487297 -176486843 + (CA)n Simple_repeat Simple_repeat 1 20 0 1696 153 78 54 chrX 487297 487597 -176486543 - MSTA LTR MaLR -70 358 43 2063 96 0 7 chrX 487931 488203 -176485937 + AluSx SINE Alu 43 312 0 719 84 0 0 chrX 488642 488737 -176485403 + AluSc SINE Alu 2 96 -213 1949 153 0 25 chrX 489174 489494 -176484646 - AluSx SINE Alu 0 312 1 644 256 17 0 chrX 489563 489735 -176484405 + MER45A DNA AcHobo 1 175 -3 846 119 0 0 chrX 490753 490871 -176483269 - AluSq SINE Alu -155 158 41 2173 136 3 0 chrX 491201 491510 -176482630 - AluSx SINE Alu -2 310 1 310 278 41 0 chrX 492822 492919 -176481221 + MER34C LTR ERV1 1 101 -484 319 198 33 22 chrX 493015 493106 -176481034 - MER90 LTR ERV1 -477 98 7 742 245 58 5 chrX 493641 493849 -176480291 - MLT1D LTR MaLR -286 219 1 198 318 37 28 chrX 494620 494727 -176479413 + L2 LINE L2 2930 3037 -235 192 77 0 0 chrX 495153 495179 -176478961 + (GA)n Simple_repeat Simple_repeat 1 26 0 2287 95 7 0 chrX 496261 496555 -176477585 + AluSg SINE Alu 1 296 -14 2125 109 6 40 chrX 496795 497116 -176477024 + AluSx SINE Alu 1 310 -2 331 328 85 17 chrX 497241 497595 -176476545 + L1ME4a LINE L1 5491 5868 -253 646 274 12 12 chrX 498366 498534 -176475606 - MER45A DNA AcHobo -3 175 8 2314 94 0 10 chrX 499342 499640 -176474500 - AluSg SINE Alu -15 295 1 22 70 0 0 chrX 499758 499801 -176474339 + AT_rich Low_complexity Low_complexity 1 43 0 207 0 0 0 chrX 500181 500204 -176473936 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 29 47 0 0 chrX 501007 501050 -176473090 + AT_rich Low_complexity Low_complexity 1 43 0 2198 90 3 21 chrX 501126 501450 -176472690 + AluSx SINE Alu 1 319 0 537 328 6 0 chrX 502312 502486 -176471654 - MER45A DNA AcHobo -3 175 1 254 132 19 0 chrX 503003 503056 -176471084 + GA-rich Low_complexity Low_complexity 1 54 0 228 67 0 0 chrX 503733 503763 -176470377 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 330 26 0 0 chrX 503762 503801 -176470339 + (CA)n Simple_repeat Simple_repeat 1 39 0 2282 93 3 0 chrX 503904 504194 -176469946 - AluSc SINE Alu -10 299 9 2429 81 0 7 chrX 504894 505203 -176468937 - AluSc SINE Alu -2 307 1 2303 100 0 3 chrX 505876 506177 -176467963 + AluSx SINE Alu 1 300 -12 303 256 53 15 chrX 506177 506310 -176467830 - MER33 DNA MER1_type -19 344 207 42 77 0 0 chrX 506310 506401 -176467739 + AT_rich Low_complexity Low_complexity 1 91 0 267 284 11 17 chrX 506464 506640 -176467500 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 68 0 0 chrX 506659 506718 -176467422 + AT_rich Low_complexity Low_complexity 1 59 0 384 227 34 17 chrX 506745 506831 -176467309 + (TA)n Simple_repeat Simple_repeat 1 84 -95 2289 105 10 0 chrX 506831 507125 -176467015 + AluSp SINE Alu 1 297 -16 384 227 34 17 chrX 507125 507214 -176466926 + (TA)n Simple_repeat Simple_repeat 84 179 0 266 286 19 0 chrX 507242 507403 -176466737 + (TA)n Simple_repeat Simple_repeat 2 165 0 495 185 82 86 chrX 507456 507638 -176466502 - MER33 DNA MER1_type -2353 232 50 2277 187 9 12 chrX 507638 508065 -176466075 + MSTB LTR MaLR 1 426 0 495 185 82 86 chrX 508065 508114 -176466026 - MER33 DNA MER1_type -2535 50 2 2415 77 0 0 chrX 508503 508800 -176465340 + AluY SINE Alu 1 297 -14 625 161 100 0 chrX 508884 509014 -176465126 - L1MC3 LINE L1 -195 7590 7448 306 121 35 17 chrX 509041 509099 -176465041 - MSTB1 LTR MaLR -43 389 331 720 114 9 0 chrX 509193 509298 -176464842 - MSTB1 LTR MaLR 0 432 327 1551 180 200 130 chrX 509300 509555 -176464585 - L1MC3 LINE L1 -340 7445 7209 240 284 12 25 chrX 509555 509636 -176464504 - MLT1F1 LTR MaLR -453 114 35 1551 180 200 130 chrX 509636 509985 -176464155 - L1MC3 LINE L1 -576 7209 6713 1266 233 38 24 chrX 510019 510311 -176463829 + AluJo SINE Alu 1 296 -6 471 214 0 0 chrX 510314 510398 -176463742 + AluJo/FRAM SINE Alu 207 290 -22 243 88 0 0 chrX 511922 511956 -176462184 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2286 75 0 4 chrX 511956 512237 -176461903 - AluSx SINE Alu -32 280 1 2257 84 3 32 chrX 512662 512972 -176461168 - AluSx SINE Alu -7 305 5 1568 174 0 30 chrX 513219 513350 -176460790 + AluJb SINE Alu 6 126 -186 2220 111 0 7 chrX 513350 513657 -176460483 + AluSx SINE Alu 2 306 -6 1568 174 0 30 chrX 513657 513795 -176460345 + AluJb SINE Alu 126 267 -45 230 326 22 58 chrX 514081 514219 -176459921 + MIR SINE MIR 34 166 -96 2164 113 0 35 chrX 514264 514582 -176459558 + AluSx SINE Alu 1 307 -5 2748 86 23 16 chrX 514968 515354 -176458786 + MLT2A1 LTR ERVL 1 389 -55 192 77 0 0 chrX 515354 515380 -176458760 + (TA)n Simple_repeat Simple_repeat 1 26 0 1629 164 32 11 chrX 515750 516061 -176458079 - AluJo SINE Alu 0 317 1 2316 95 3 0 chrX 516276 516572 -176457568 + AluSx SINE Alu 1 297 -15 210 91 0 0 chrX 516588 516621 -176457519 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 258 61 0 chrX 517132 517198 -176456942 - MIR SINE MIR -117 145 76 496 248 10 2 chrX 517330 517744 -176456396 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 350 281 0 6 chrX 517768 517939 -176456201 + (TCCA)n Simple_repeat Simple_repeat 4 173 0 563 227 8 0 chrX 519075 519203 -176454937 - AluJb SINE Alu -7 305 177 627 144 8 23 chrX 519230 519362 -176454778 + CT-rich Low_complexity Low_complexity 3 132 0 884 145 0 0 chrX 519364 519495 -176454645 - FLAM_C SINE Alu -2 131 1 283 287 53 0 chrX 519894 519988 -176454152 + MER5A DNA MER1_type 11 109 -80 2285 105 0 0 chrX 521072 521366 -176452774 + AluSp SINE Alu 2 295 -18 208 361 17 17 chrX 521671 521790 -176452350 - MIR SINE MIR -70 138 20 264 174 43 0 chrX 521843 521889 -176452251 + MLT1D LTR MaLR 1 48 -457 334 125 42 0 chrX 521892 521940 -176452200 + MLT1D LTR MaLR 1 50 -455 298 106 64 0 chrX 521941 521988 -176452152 + MLT1D LTR MaLR 1 50 -455 360 102 20 0 chrX 521989 522038 -176452102 + MLT1D LTR MaLR 1 50 -455 312 143 20 0 chrX 522039 522088 -176452052 + MLT1D LTR MaLR 1 50 -455 325 122 20 0 chrX 522089 522138 -176452002 + MLT1D LTR MaLR 1 50 -455 349 102 20 0 chrX 522139 522188 -176451952 + MLT1D LTR MaLR 1 50 -455 336 104 42 0 chrX 522189 522237 -176451903 + MLT1D LTR MaLR 1 50 -455 2158 198 26 40 chrX 522238 522746 -176451394 + MLT1D LTR MaLR 1 622 -4 2845 62 3 3 chrX 522772 523127 -176451013 + THE1A LTR MaLR 1 355 0 3100 109 2 5 chrX 523132 523574 -176450566 + MER41A LTR ERV1 1 441 -113 2312 85 3 0 chrX 523574 523868 -176450272 - AluSc SINE Alu -9 300 6 2205 119 0 10 chrX 524177 524489 -176449651 + AluSx SINE Alu 4 312 0 289 279 45 52 chrX 524791 524945 -176449195 - MER103 DNA DNA 0 166 14 1868 161 3 10 chrX 525237 525542 -176448598 - AluJb SINE Alu -9 303 1 1784 115 4 4 chrX 525677 525929 -176448211 + AluSq SINE Alu 1 252 -61 2049 116 20 0 chrX 527555 527847 -176446293 + AluSx SINE Alu 1 298 -14 2154 105 0 10 chrX 527857 528151 -176445989 + AluSx SINE Alu 7 297 -15 2382 95 0 0 chrX 528727 529023 -176445117 + AluSg SINE Alu 1 296 -14 422 291 10 10 chrX 529023 529126 -176445014 - MLT1E LTR MaLR -489 104 2 1993 139 3 3 chrX 529365 529666 -176444474 - AluSx SINE Alu -11 301 1 467 315 12 6 chrX 531067 531232 -176442908 - MLT1G1 LTR MaLR -207 388 223 360 169 0 0 chrX 531444 531509 -176442631 + Alu SINE Alu 234 298 -3 236 308 0 0 chrX 531509 531574 -176442566 - L2 LINE L2 -18 3295 3231 204 267 0 0 chrX 531609 531669 -176442471 + (TG)n Simple_repeat Simple_repeat 1 60 0 1991 141 0 33 chrX 531718 532017 -176442123 - AluJo SINE Alu -23 289 1 2282 108 3 0 chrX 532088 532384 -176441756 - AluSx SINE Alu -15 297 1 2346 103 0 10 chrX 532721 533023 -176441117 - AluSg SINE Alu -11 299 1 1844 162 8 22 chrX 533164 533507 -176440633 - L1PA16 LINE L1 0 6166 5827 2160 131 3 3 chrX 533507 533813 -176440327 - AluSc SINE Alu -3 306 1 1844 162 8 22 chrX 533813 533827 -176440313 - L1PA16 LINE L1 -339 5827 5814 1023 97 28 7 chrX 533827 533972 -176440168 - AluSc SINE Alu -30 279 132 1173 132 0 16 chrX 533972 534154 -176439986 - AluSg/x SINE Alu 0 310 132 1110 430 35 3 chrX 534154 534438 -176439702 - AluSx SINE Alu -9 293 1 2168 104 11 0 chrX 534701 534988 -176439152 + AluSq SINE Alu 1 290 -23 261 0 0 0 chrX 535220 535249 -176438891 + (T)n Simple_repeat Simple_repeat 1 29 0 1909 127 9 72 chrX 535361 535503 -176438637 + AluJb SINE Alu 1 150 -162 2108 135 6 6 chrX 535503 535815 -176438325 + AluSx SINE Alu 1 312 0 1909 127 9 72 chrX 535815 536004 -176438136 + AluJb SINE Alu 150 311 -1 2251 91 0 10 chrX 536080 536378 -176437762 + AluSx SINE Alu 1 295 -17 741 161 8 16 chrX 536462 536586 -176437554 + AluJo SINE Alu 15 137 -175 1565 197 4 14 chrX 536588 536867 -176437273 + AluJo SINE Alu 5 280 -32 366 80 0 0 chrX 536869 536919 -176437221 + (TAA)n Simple_repeat Simple_repeat 1 50 0 230 75 0 25 chrX 536920 536960 -176437180 + MADE1 DNA Mariner 5 43 -37 2385 92 0 13 chrX 537154 537468 -176436672 - AluSg SINE Alu 0 310 1 1800 178 0 3 chrX 537577 537899 -176436241 - AluJo SINE Alu 0 321 1 1244 211 42 131 chrX 537913 538514 -176435626 - L1MD2 LINE L1 0 6359 5813 294 287 49 16 chrX 538564 538686 -176435454 - L1MD2 LINE L1 -2083 5725 5600 1783 161 3 20 chrX 538689 538994 -176435146 - AluJo SINE Alu -12 300 1 324 299 125 7 chrX 539121 539265 -176434875 - L1MD2 LINE L1 -2329 5479 5319 2492 54 0 14 chrX 539303 539599 -176434541 + AluY SINE Alu 1 292 -19 2750 96 13 0 chrX 539609 539986 -176434154 + L1PA8 LINE L1 5787 6168 -4 626 297 138 47 chrX 539986 540231 -176433909 - L1MC/D LINE L1 -770 5376 5155 1587 163 36 33 chrX 540231 540537 -176433603 - AluJo SINE Alu -5 307 1 626 297 138 47 chrX 540537 541109 -176433031 - L1MC/D LINE L1 -991 5155 4549 26 0 0 0 chrX 541151 541177 -176432963 + AT_rich Low_complexity Low_complexity 1 26 0 2295 82 0 10 chrX 541177 541470 -176432670 - AluSg SINE Alu -20 290 1 2167 161 21 0 chrX 541470 541848 -176432292 - L1PA16 LINE L1 -11 6155 5770 1000 139 6 6 chrX 541855 542020 -176432120 + L1PA16 LINE L1 5608 5772 -394 2660 55 0 0 chrX 542028 542337 -176431803 - AluY SINE Alu -2 309 1 1825 155 7 39 chrX 542340 542650 -176431490 - AluJb SINE Alu -12 300 1 363 272 43 27 chrX 542652 542836 -176431304 - LTR16B LTR ERVL -8 456 270 472 145 0 0 chrX 543106 543182 -176430958 - AluJ/FRAM SINE Alu -14 298 223 638 327 53 56 chrX 543283 543643 -176430497 - L1MC/D LINE L1 -1675 4471 4111 1685 157 3 28 chrX 543643 543929 -176430211 + AluJo SINE Alu 18 296 -16 638 327 53 56 chrX 543929 544036 -176430104 - L1MC/D LINE L1 -2035 4111 4005 219 170 0 0 chrX 544041 544088 -176430052 + (CA)n Simple_repeat Simple_repeat 2 48 0 341 96 0 82 chrX 544463 544536 -176429604 - MLT1A1 LTR MaLR -276 89 23 4032 52 4 4 chrX 544597 545097 -176429043 - L1PA7 LINE L1 -1 6153 5654 2171 197 5 2 chrX 545115 545531 -176428609 - L1PB4 LINE L1 -2 6154 5738 1040 177 8 6 chrX 546515 546790 -176427350 + GA-rich Low_complexity Low_complexity 1 457 -76 1040 128 6 0 chrX 546790 546969 -176427171 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 1040 177 8 6 chrX 546969 547047 -176427093 + GA-rich Low_complexity Low_complexity 457 533 0 2414 221 55 2 chrX 547165 547694 -176426446 + MER74A LTR ERVL 1 557 -1 2021 150 0 13 chrX 548209 548522 -176425618 - AluSx SINE Alu -2 310 2 650 222 7 22 chrX 548763 549040 -176425100 - MLT1B LTR MaLR -2 465 170 1856 161 53 9 chrX 549044 549418 -176424722 - MLT1B LTR MaLR 0 396 1 823 192 7 7 chrX 549783 549929 -176424211 - FRAM SINE Alu -16 150 5 1142 139 6 0 chrX 549937 550110 -176424030 - AluSg SINE Alu 0 312 139 1203 83 0 0 chrX 550230 550375 -176423765 - AluSg SINE Alu -165 145 1 230 67 0 0 chrX 550390 550420 -176423720 - L1M LINE L1 -915 5397 5368 23 0 0 0 chrX 550464 550487 -176423653 + AT_rich Low_complexity Low_complexity 1 23 0 1740 178 30 0 chrX 550565 550863 -176423277 - AluJb SINE Alu -5 307 1 2253 88 0 3 chrX 550895 551180 -176422960 - AluSg SINE Alu -26 284 1 2539 185 15 2 chrX 551503 551984 -176422156 - LTR15 LTR ERV1 -6 487 1 432 333 46 35 chrX 552067 552241 -176421899 + MER5A DNA MER1_type 1 176 -13 2345 100 3 3 chrX 552512 552813 -176421327 - AluSq SINE Alu -12 301 1 1705 118 30 43 chrX 553055 553206 -176420934 + L1MA3 LINE L1 5988 6135 -170 2313 103 17 0 chrX 553206 553507 -176420633 + AluSx SINE Alu 2 307 -5 1705 118 30 43 chrX 553507 553659 -176420481 + L1MA3 LINE L1 6135 6287 -18 217 321 0 29 chrX 555564 555701 -176418439 + (TTAGG)n Simple_repeat Simple_repeat 3 135 0 206 264 0 35 chrX 555809 555896 -176418244 + (TTAAG)n Simple_repeat Simple_repeat 4 87 0 * 209 248 57 19 chrX 555836 555941 -176418199 + (AGTTG)n Simple_repeat Simple_repeat 1 109 0 276 314 0 31 chrX 556186 556345 -176417795 + (TTAGG)n Simple_repeat Simple_repeat 2 155 0 2825 176 16 69 chrX 556539 556892 -176417248 - L1MA8 LINE L1 -3 6288 5993 2442 104 0 0 chrX 556892 557201 -176416939 - AluSc SINE Alu 0 309 1 2825 176 16 69 chrX 557201 557589 -176416551 - L1MA8 LINE L1 -298 5993 5586 849 142 0 0 chrX 557732 557852 -176416288 + AluSq/x SINE Alu 1 120 -192 1098 133 0 0 chrX 558350 558538 -176415602 - AluSg/x SINE Alu 0 319 132 2132 114 0 41 chrX 558539 558854 -176415286 - AluSg SINE Alu -8 302 1 2055 116 3 7 chrX 560085 560401 -176413739 + AluSx SINE Alu 1 315 0 2018 96 0 3 chrX 560559 560841 -176413299 + L1PA7 LINE L1 5874 6154 0 1694 91 0 0 chrX 561742 561951 -176412189 + AluSg SINE Alu 1 209 -101 277 102 0 0 chrX 561953 562002 -176412138 + AluSg SINE Alu 260 308 0 21 0 0 0 chrX 562155 562176 -176411964 + AT_rich Low_complexity Low_complexity 1 21 0 3306 190 9 31 chrX 562176 562414 -176411726 - L1PB4 LINE L1 -1 6155 5913 2352 203 54 30 chrX 562414 562911 -176411229 + LTR22 LTR ERVK 1 509 0 3306 190 9 31 chrX 562911 563351 -176410789 - L1PB4 LINE L1 -243 5913 5492 2212 94 3 3 chrX 563381 563669 -176410471 + AluSx SINE Alu 7 294 -18 1586 129 40 66 chrX 563673 563810 -176410330 - THE1B LTR MaLR -69 295 156 2266 97 3 3 chrX 563810 564134 -176410006 + AluSq SINE Alu 2 313 0 1586 129 40 66 chrX 564134 564299 -176409841 - THE1B LTR MaLR -208 156 1 482 217 17 26 chrX 564301 564416 -176409724 + MLT1E2 LTR MaLR 495 608 -18 182 206 29 0 chrX 564908 564942 -176409198 + MIR SINE MIR 118 152 -56 2366 92 3 0 chrX 564959 565252 -176408888 - AluSp SINE Alu -17 296 3 32 0 0 0 chrX 565262 565294 -176408846 + AT_rich Low_complexity Low_complexity 1 32 0 694 181 9 0 chrX 565294 565410 -176408730 - FLAM_C SINE Alu -25 118 2 218 200 40 0 chrX 565534 565584 -176408556 + MIR SINE MIR 101 152 -56 1894 215 65 45 chrX 566071 566189 -176407951 - MER41D LTR ERV1 -11 546 432 2247 136 0 0 chrX 566189 566499 -176407641 + AluSx SINE Alu 2 311 -1 1894 215 65 45 chrX 566499 566915 -176407225 - MER41D LTR ERV1 -125 432 1 27 83 0 28 chrX 568678 568787 -176405353 + GC_rich Low_complexity Low_complexity 1 106 0 23 0 0 0 chrX 568917 568940 -176405200 + AT_rich Low_complexity Low_complexity 1 23 0 1295 164 9 5 chrX 568986 569200 -176404940 - AluJo SINE Alu -94 218 4 1232 203 114 7 chrX 569207 569478 -176404662 - AluJo SINE Alu -2 300 1 548 282 96 47 chrX 569487 569873 -176404267 - Charlie1b DNA MER1_type -115 408 4 467 193 47 94 chrX 571540 571555 -176402585 - Charlie1 DNA MER1_type 0 2761 2747 2172 104 10 0 chrX 571555 571852 -176402288 - AluSp SINE Alu -13 300 1 467 193 47 94 chrX 571852 572049 -176402091 - Charlie1 DNA MER1_type -14 2747 2559 62 52 0 0 chrX 572053 572150 -176401990 + AT_rich Low_complexity Low_complexity 1 97 0 837 137 75 176 chrX 572171 572324 -176401816 - L1MA7 LINE L1 -3 6288 6121 868 100 0 0 chrX 572324 572444 -176401696 - L1PB1 LINE L1 -1 6150 6031 837 137 75 176 chrX 572444 572467 -176401673 - L1MA7 LINE L1 -170 6121 6097 2218 125 3 3 chrX 572467 572779 -176401361 + AluSx SINE Alu 1 312 0 837 137 75 176 chrX 572779 572907 -176401233 - L1MA7 LINE L1 -194 6097 6014 485 275 23 41 chrX 572915 573133 -176401007 - Charlie1 DNA MER1_type -197 2564 2351 198 71 0 0 chrX 573585 573613 -176400527 + (TAA)n Simple_repeat Simple_repeat 2 29 0 231 146 0 0 chrX 573656 573697 -176400443 + (TAA)n Simple_repeat Simple_repeat 2 42 0 198 71 0 0 chrX 573739 573767 -176400373 + (TAA)n Simple_repeat Simple_repeat 2 29 0 279 79 0 0 chrX 573812 573850 -176400290 + (TAA)n Simple_repeat Simple_repeat 1 38 0 216 97 0 0 chrX 573893 573924 -176400216 + (TAA)n Simple_repeat Simple_repeat 2 32 0 215 158 0 0 chrX 573969 574007 -176400133 + (TAA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 574233 574261 -176399879 + AT_rich Low_complexity Low_complexity 1 28 0 2233 110 3 10 chrX 574521 574829 -176399311 - AluSq SINE Alu -5 308 3 203 184 0 0 chrX 574876 574914 -176399226 + (TAA)n Simple_repeat Simple_repeat 1 38 0 201 39 0 0 chrX 574959 574985 -176399155 + (TAA)n Simple_repeat Simple_repeat 3 28 0 285 29 0 0 chrX 575030 575064 -176399076 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1036 247 136 19 chrX 575634 576067 -176398073 - MLT1D LTR MaLR -19 486 3 612 231 87 63 chrX 576079 576365 -176397775 - MLT1C LTR MaLR -122 345 53 2491 86 0 0 chrX 577149 577452 -176396688 + AluSx SINE Alu 1 303 -9 2080 97 31 3 chrX 580044 580333 -176393807 + AluSx SINE Alu 1 297 -15 1701 107 4 27 chrX 580889 581150 -176392990 + AluSx SINE Alu 42 296 -16 21 0 0 0 chrX 582173 582194 -176391946 + AT_rich Low_complexity Low_complexity 1 21 0 300 283 0 35 chrX 582454 582567 -176391573 + CT-rich Low_complexity Low_complexity 3 111 0 729 115 0 68 chrX 582577 582769 -176391371 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 865 141 0 22 chrX 582806 582990 -176391150 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 27 0 0 0 chrX 583311 583338 -176390802 + AT_rich Low_complexity Low_complexity 1 27 0 303 267 0 30 chrX 583355 583456 -176390684 + G-rich Low_complexity Low_complexity 2 99 0 423 185 8 25 chrX 583464 583583 -176390557 + CT-rich Low_complexity Low_complexity 2 118 0 379 235 10 20 chrX 584681 584779 -176389361 - MER58B DNA MER1_type -20 321 225 2145 94 11 0 chrX 584780 585056 -176389084 + AluSq SINE Alu 2 280 -33 230 191 24 71 chrX 585082 585166 -176388974 - MER58B DNA MER1_type -183 158 79 180 0 0 0 chrX 585242 585262 -176388878 + (T)n Simple_repeat Simple_repeat 1 20 0 1755 151 0 31 chrX 585481 585800 -176388340 + AluJo SINE Alu 1 310 0 911 207 0 0 chrX 585800 585964 -176388176 + AluJb SINE Alu 135 298 -14 1490 176 22 38 chrX 586487 586623 -176387517 + AluJo SINE Alu 1 138 -174 1749 184 3 7 chrX 586623 586922 -176387218 + AluJo SINE Alu 1 298 -14 1490 176 22 38 chrX 586922 587098 -176387042 + AluJo SINE Alu 138 308 -4 2238 106 7 0 chrX 587375 587668 -176386472 - AluSq SINE Alu -18 295 1 419 206 0 20 chrX 587848 587950 -176386190 - L1MA7 LINE L1 -8 6283 6184 2081 207 43 62 chrX 588060 588224 -176385916 - L1MA8 LINE L1 -107 6184 6018 1715 175 14 7 chrX 588224 588516 -176385624 - AluJo SINE Alu -18 294 1 744 196 0 0 chrX 588519 588652 -176385488 - AluJo/FLAM SINE Alu -169 133 1 2081 207 43 62 chrX 588652 589059 -176385081 - L1MA8 LINE L1 -275 6016 5620 2280 107 0 0 chrX 591662 591962 -176382178 - AluSx SINE Alu -12 300 1 2026 138 23 0 chrX 592523 592828 -176381312 - AluSq SINE Alu -1 312 1 2218 151 10 29 chrX 592831 593168 -176380972 - L1PA15 LINE L1 -6 6159 5830 2200 115 3 0 chrX 593168 593463 -176380677 - AluSp SINE Alu -17 296 1 2218 151 10 29 chrX 593463 593535 -176380605 - L1PA15 LINE L1 -335 5830 5758 2295 101 0 0 chrX 593753 594049 -176380091 - AluSq SINE Alu -17 296 1 529 168 0 0 chrX 594233 594340 -176379800 - L1MA7 LINE L1 -1 6290 6184 1381 194 97 119 chrX 594411 594621 -176379519 - L1MA7 LINE L1 -88 6203 5990 1588 190 14 0 chrX 594621 594905 -176379235 - AluJo SINE Alu -24 288 1 739 203 0 0 chrX 594910 595043 -176379097 - FLAM_C SINE Alu 0 133 1 1381 194 97 119 chrX 595043 595423 -176378717 - L1MA7 LINE L1 -305 5986 5620 988 106 0 0 chrX 597045 597177 -176376963 - AluSg/x SINE Alu -11 301 170 1551 202 57 9 chrX 597178 597509 -176376631 - MLT1A1 LTR MaLR -15 350 4 21 36 0 0 chrX 597553 597581 -176376559 + AT_rich Low_complexity Low_complexity 1 28 0 1012 118 0 0 chrX 597822 597958 -176376182 - AluSp/q SINE Alu -18 295 160 198 0 0 0 chrX 598124 598146 -176375994 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 1302 174 126 7 chrX 598364 598634 -176375506 + AluJo SINE Alu 1 302 -10 841 167 0 32 chrX 598634 598790 -176375350 + AluJo/FRAM SINE Alu 134 284 -28 2478 81 0 0 chrX 599092 599390 -176374750 - AluSq SINE Alu -15 298 1 402 192 29 19 chrX 599576 599680 -176374460 - L1MA7 LINE L1 -3 6288 6184 1918 193 52 64 chrX 599789 599953 -176374187 - L1MA8 LINE L1 -100 6191 6027 1685 181 24 0 chrX 599953 600241 -176373899 - AluJo SINE Alu -17 295 1 684 226 0 0 chrX 600251 600384 -176373756 - FLAM_C SINE Alu 0 133 1 1918 193 52 64 chrX 600384 600787 -176373353 - L1MA8 LINE L1 -273 6018 5620 236 177 0 48 chrX 602754 602816 -176371324 - MLT1A1 LTR MaLR -306 59 1 2365 92 0 0 chrX 603127 603422 -176370718 - AluSq SINE Alu -18 295 1 1604 174 3 34 chrX 603426 603748 -176370392 - AluJo SINE Alu 0 312 1 2621 50 3 0 chrX 604269 604572 -176369568 - AluY SINE Alu -7 304 1 5148 24 0 0 chrX 605093 605677 -176368463 - L1PA4 LINE L1 -7 6148 5565 1127 206 58 21 chrX 605677 605968 -176368172 - MLT1A1 LTR MaLR -54 311 10 209 301 23 40 chrX 607429 607605 -176366535 + (CAGGT)n Simple_repeat Simple_repeat 4 176 0 33 0 0 0 chrX 608185 608218 -176365922 + AT_rich Low_complexity Low_complexity 1 33 0 551 260 83 0 chrX 608418 608599 -176365541 - MER58A DNA MER1_type -2 222 27 285 324 0 32 chrX 609312 609497 -176364643 + (TTAGG)n Simple_repeat Simple_repeat 2 180 0 941 55 0 0 chrX 609753 609862 -176364278 - AluSq/x SINE Alu -203 109 1 1311 178 12 42 chrX 609864 610123 -176364017 + MLT1A1 LTR MaLR 31 318 -78 1694 95 5 0 chrX 610123 610345 -176363795 + AluSp SINE Alu 87 309 -4 207 0 0 0 chrX 610494 610517 -176363623 + (A)n Simple_repeat Simple_repeat 1 23 0 258 237 0 0 chrX 611127 611203 -176362937 + (CAT)n Simple_repeat Simple_repeat 2 77 0 1678 181 7 17 chrX 612020 612318 -176361822 + AluJb SINE Alu 1 295 -17 1041 76 0 7 chrX 612498 612642 -176361498 - L1PA8 LINE L1 -341 5831 5689 1665 196 20 38 chrX 612653 613051 -176361089 - L1MB1 LINE L1 -1 6167 5777 2164 109 0 16 chrX 613051 613354 -176360786 - AluSx SINE Alu -14 298 1 2382 64 24 3 chrX 613361 613658 -176360482 - AluY SINE Alu -8 303 1 2071 110 23 17 chrX 613711 614011 -176360129 - AluSx SINE Alu -10 302 1 233 139 23 0 chrX 614017 614060 -176360080 - L1M2 LINE L1 -467 5824 5781 1849 129 0 0 chrX 614160 614415 -176359725 - AluSx SINE Alu -54 258 4 1703 118 22 4 chrX 614426 614698 -176359442 + L1PB1 LINE L1 5867 6143 -8 1189 144 0 42 chrX 614738 614953 -176359187 - Tigger2a DNA MER2_type -228 206 1 977 248 44 50 chrX 614954 615297 -176358843 - MLT1A2 LTR MaLR -33 341 1 1549 109 0 0 chrX 616089 616290 -176357850 + AluSq SINE Alu 1 201 -112 947 55 87 0 chrX 616410 616537 -176357603 - MER85 DNA T2_type 0 139 2 566 233 10 79 chrX 616552 616675 -176357465 - MER4C LTR ERV1 -2 463 333 2418 81 0 0 chrX 616675 616973 -176357167 - AluSx SINE Alu -14 298 1 2211 111 3 3 chrX 616973 617278 -176356862 - AluSx SINE Alu -6 306 1 566 233 10 79 chrX 617278 617355 -176356785 - MER4C LTR ERV1 -130 335 276 897 148 7 187 chrX 617363 617722 -176356418 - MER4A LTR ERV1 -177 522 139 1658 129 53 76 chrX 617789 618091 -176356049 + AluJb SINE Alu 1 295 -17 3307 129 8 2 chrX 618130 618648 -176355492 + MER41B LTR ERV1 113 633 -2 1694 127 8 0 chrX 618776 619013 -176355127 + AluSq SINE Alu 62 300 -13 2069 131 3 0 chrX 619023 619320 -176354820 + AluSx SINE Alu 1 298 -14 1861 162 17 67 chrX 619509 619891 -176354249 + Tigger2a DNA MER2_type 2 365 -2343 2238 127 0 0 chrX 619891 620190 -176353950 + AluSq SINE Alu 1 299 -14 1861 162 17 67 chrX 620190 620209 -176353931 + Tigger2a DNA MER2_type 365 383 -51 697 189 6 6 chrX 620314 620494 -176353646 + (CAT)n Simple_repeat Simple_repeat 1 180 0 806 192 6 0 chrX 620511 620839 -176353301 + (CAT)n Simple_repeat Simple_repeat 1 330 0 231 354 98 32 chrX 621259 621544 -176352596 - L2 LINE L2 -616 2698 2395 1346 66 11 0 chrX 621974 622157 -176351983 + L1PA2 LINE L1 5932 6116 -39 2175 158 71 76 chrX 623125 623353 -176350787 + LTR39 LTR ERV1 1 229 -554 2857 56 26 3 chrX 623353 623730 -176350410 + L1PA7 LINE L1 5767 6152 -2 2175 158 71 76 chrX 623730 624013 -176350127 + LTR39 LTR ERV1 229 511 -272 2278 99 0 17 chrX 624013 624315 -176349825 - AluSq SINE Alu -16 297 1 2175 158 71 76 chrX 624315 624365 -176349775 + LTR39 LTR ERV1 511 560 -223 741 121 17 0 chrX 624465 624581 -176349559 + MLT2A1 LTR ERVL 327 444 0 492 284 138 53 chrX 624766 625048 -176349092 + L1M4 LINE L1 2922 3227 -2919 2232 103 4 0 chrX 625370 625651 -176348489 + AluSx SINE Alu 1 282 -30 200 91 0 30 chrX 625651 625684 -176348456 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 0 0 0 chrX 625691 625727 -176348413 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 677 273 19 19 chrX 625779 625988 -176348152 + MER58A DNA MER1_type 1 209 -15 244 321 176 0 chrX 626345 626510 -176347630 + MER117 DNA MER1_type 4 197 0 240 111 0 0 chrX 626661 626697 -176347443 + (ATG)n Simple_repeat Simple_repeat 1 36 0 372 94 0 0 chrX 626726 626779 -176347361 + (CA)n Simple_repeat Simple_repeat 2 54 0 933 91 0 8 chrX 626785 626906 -176347234 - AluSc SINE Alu -27 282 163 1068 96 0 0 chrX 627006 627141 -176346999 - AluSq SINE Alu -54 259 125 188 365 0 21 chrX 627191 627287 -176346853 - MIR SINE MIR -140 122 29 1473 224 0 20 chrX 627529 627824 -176346316 + AluJo SINE Alu 1 289 -23 264 77 0 0 chrX 627912 627951 -176346189 + LTR9 LTR ERV1 1 39 -573 1096 170 0 6 chrX 627951 628122 -176346018 + AluJb SINE Alu 129 298 -14 526 31 0 0 chrX 628740 628805 -176345335 + LTR9 LTR ERV1 1 65 -547 1507 95 22 56 chrX 628805 629037 -176345103 - AluSg/x SINE Alu -1 309 86 399 41 0 0 chrX 629140 629189 -176344951 + (CCAA)n Simple_repeat Simple_repeat 2 50 0 1708 167 14 3 chrX 629693 629986 -176344154 - AluJo SINE Alu -3 309 14 2405 106 0 0 chrX 630020 630332 -176343808 - AluSp SINE Alu -1 312 1 778 129 57 0 chrX 630335 630459 -176343681 - AluJo SINE Alu -168 144 14 704 207 0 0 chrX 630555 630671 -176343469 + FLAM_A SINE Alu 1 116 -17 2131 122 0 22 chrX 632056 632375 -176341765 - AluSx SINE Alu 0 312 1 1044 101 14 0 chrX 632375 632514 -176341626 - AluSq/x SINE Alu -172 141 1 2381 69 3 0 chrX 632752 633042 -176341098 - AluSx SINE Alu -21 291 1 695 295 74 44 chrX 633091 633430 -176340710 + MER92B LTR ERV1 27 375 -261 2019 158 27 21 chrX 633933 634307 -176339833 - MER1A DNA MER1_type -61 468 93 2523 61 0 3 chrX 634498 634793 -176339347 - AluSc SINE Alu -15 294 1 337 295 0 9 chrX 634981 635086 -176339054 + MLT1C LTR MaLR 360 463 -4 1177 178 73 8 chrX 635107 635354 -176338786 + Tigger2a DNA MER2_type 1 263 -171 311 65 0 0 chrX 635364 635410 -176338730 + Tigger2a DNA MER2_type 232 277 -167 2264 119 0 3 chrX 635415 635727 -176338413 - AluSp SINE Alu -2 311 1 493 49 0 0 chrX 635787 635848 -176338292 + MER1A DNA MER1_type 261 321 -208 443 212 169 0 chrX 635828 635946 -176338194 + Tigger2a DNA MER2_type 292 429 -5 * 1877 168 0 43 chrX 636065 636272 -176337868 + L1PA15 LINE L1 5831 6019 -146 2187 100 0 0 chrX 636272 636552 -176337588 + AluSg SINE Alu 1 280 -30 1877 168 0 43 chrX 636552 636689 -176337451 + L1PA15 LINE L1 6019 6160 -5 385 117 48 58 chrX 636690 636793 -176337347 + Tigger3(Golem) DNA MER2_type 2425 2526 -503 1699 169 3 0 chrX 637932 638234 -176335906 - Tigger1 DNA MER2_type -165 2253 1951 2508 89 0 6 chrX 638235 638550 -176335590 + AluSq SINE Alu 1 313 0 714 213 0 0 chrX 638559 638700 -176335440 + Tigger1 DNA MER2_type 1538 1678 -740 329 115 19 0 chrX 638801 638853 -176335287 - Alu SINE Alu -250 53 1 376 217 12 0 chrX 638870 639038 -176335102 + CT-rich Low_complexity Low_complexity 1 170 0 22 0 0 0 chrX 640015 640037 -176334103 + AT_rich Low_complexity Low_complexity 1 22 0 1344 138 4 9 chrX 640298 640523 -176333617 - MLT1B LTR MaLR 0 390 167 1004 165 10 16 chrX 640529 640723 -176333417 - MLT1B LTR MaLR 0 390 198 274 317 0 0 chrX 641151 641255 -176332885 + C-rich Low_complexity Low_complexity 4 107 0 2237 94 13 3 chrX 642097 642395 -176331745 - AluSp SINE Alu 0 313 13 1405 270 0 104 chrX 642986 643323 -176330817 - AluSx SINE Alu 0 302 1 2403 99 0 0 chrX 643627 643930 -176330210 - AluSx SINE Alu -9 303 1 2366 101 7 0 chrX 644425 644733 -176329407 - AluSg SINE Alu 0 310 1 1639 186 7 14 chrX 645001 645297 -176328843 + AluJo SINE Alu 11 304 -8 226 304 25 0 chrX 645475 645554 -176328586 - MLT1B LTR MaLR -286 181 101 183 204 0 0 chrX 645891 645935 -176328205 + (CA)n Simple_repeat Simple_repeat 2 45 0 1178 78 0 20 chrX 646251 646404 -176327736 + AluSg SINE Alu 1 150 -160 685 259 70 5 chrX 646407 646592 -176327548 - MIR SINE MIR -18 244 48 1044 83 0 0 chrX 646669 646802 -176327338 + AluY SINE Alu 167 299 -12 4970 108 13 18 chrX 646802 647231 -176326909 + L1PA13 LINE L1 5359 5784 -379 1876 99 48 61 chrX 647231 647543 -176326597 + AluSg SINE Alu 1 308 -2 4970 108 13 18 chrX 647543 647903 -176326237 + L1PA13 LINE L1 5784 6144 -19 1049 170 39 5 chrX 648146 648352 -176325788 - L1M2 LINE L1 -506 5785 5573 2163 112 30 0 chrX 648440 648744 -176325396 + AluSq SINE Alu 1 313 0 2018 118 59 42 chrX 649699 649729 -176324411 + THE1B LTR MaLR 3 31 -333 2029 133 17 0 chrX 649729 650022 -176324118 - AluSq SINE Alu -15 298 1 2018 118 59 42 chrX 650022 650346 -176323794 + THE1B LTR MaLR 31 363 -1 3051 62 10 20 chrX 650387 650788 -176323352 + L1PA7 LINE L1 5758 6154 0 1340 212 0 35 chrX 651445 651761 -176322379 - MLT2D LTR ERVL 0 414 110 932 147 0 51 chrX 651761 651917 -176322223 - AluSp/q SINE Alu -12 301 154 443 208 31 6 chrX 652064 652223 -176321917 + GA-rich Low_complexity Low_complexity 1 163 0 1615 174 16 45 chrX 652947 653258 -176320882 + AluJo SINE Alu 1 302 -10 333 196 78 0 chrX 653736 653889 -176320251 + (TA)n Simple_repeat Simple_repeat 1 165 0 40 79 0 0 chrX 653916 654005 -176320135 + AT_rich Low_complexity Low_complexity 1 89 0 354 145 90 18 chrX 654056 654222 -176319918 + (TA)n Simple_repeat Simple_repeat 1 178 0 724 158 16 16 chrX 654237 654364 -176319776 - FLAM_A SINE Alu -6 136 10 2176 112 0 3 chrX 654785 655072 -176319068 - AluSx SINE Alu -8 304 19 1186 195 24 30 chrX 655518 655816 -176318324 + L1MB3 LINE L1 5596 5891 -292 2293 178 11 15 chrX 655816 656277 -176317863 + L1MB3 LINE L1 5723 6181 -2 2168 102 27 0 chrX 656296 656589 -176317551 + AluSp SINE Alu 1 301 -12 305 69 0 52 chrX 656589 656638 -176317502 + L1MB3 LINE L1 6134 6181 -2 2139 127 0 0 chrX 656653 656960 -176317180 + AluSx SINE Alu 1 307 -5 1795 162 30 20 chrX 657890 658193 -176315947 - AluJo SINE Alu -6 306 1 2286 112 0 6 chrX 658212 658525 -176315615 - AluY SINE Alu 0 311 1 2094 68 0 8 chrX 658840 659105 -176315035 + AluY SINE Alu 45 307 -4 1377 98 0 0 chrX 659105 659279 -176314861 + AluSg/x SINE Alu 124 297 -13 505 156 0 33 chrX 659476 659566 -176314574 - AluS SINE Alu -226 87 1 216 0 0 0 chrX 659995 660019 -176314121 + (TG)n Simple_repeat Simple_repeat 1 24 0 832 200 0 0 chrX 660516 660671 -176313469 + AluJo SINE Alu 1 155 -157 1685 166 7 7 chrX 660672 660962 -176313178 + AluJo SINE Alu 23 312 0 1068 109 0 0 chrX 661046 661184 -176312956 + AluSp/q SINE Alu 162 299 -14 2090 101 0 0 chrX 661308 661584 -176312556 + AluSx SINE Alu 37 312 0 1301 235 68 29 chrX 661608 662050 -176312090 + MLT1C LTR MaLR 7 465 -2 2324 91 0 3 chrX 663067 663364 -176310776 - AluSc SINE Alu -13 296 1 301 263 30 0 chrX 664629 664728 -176309412 - MLT2D LTR ERVL -310 104 3 29 70 0 0 chrX 664925 664982 -176309158 + AT_rich Low_complexity Low_complexity 1 57 0 297 0 0 0 chrX 664985 665018 -176309122 + (TA)n Simple_repeat Simple_repeat 1 33 0 3098 61 8 5 chrX 665020 665645 -176308495 - L1PA7 LINE L1 -2 6152 5392 3614 161 4 85 chrX 665760 666538 -176307602 - LTR62 LTR ERVK -4 715 1 1280 201 60 2 chrX 666543 666952 -176307188 - LTR19A LTR ERV1 0 486 1 2197 129 0 3 chrX 667786 668096 -176306044 + AluSq SINE Alu 1 309 -4 982 250 79 27 chrX 668281 668664 -176305476 + MLT1C LTR MaLR 45 454 -13 492 169 0 11 chrX 669450 669461 -176304679 + L1PB1 LINE L1 5782 5792 -359 219 88 0 0 chrX 669461 669495 -176304645 + (CA)n Simple_repeat Simple_repeat 2 35 0 492 169 0 11 chrX 669495 669572 -176304568 + L1PB1 LINE L1 5792 5869 -282 2390 66 0 3 chrX 669573 669875 -176304265 - L1PA7 LINE L1 -3 6151 5851 3321 172 33 33 chrX 669875 670487 -176303653 + L1PB2 LINE L1 5460 6095 -56 2202 120 0 10 chrX 670487 670787 -176303353 + AluSx SINE Alu 4 300 -12 3321 172 33 33 chrX 670787 670845 -176303295 + L1PB2 LINE L1 6094 6151 0 1929 212 22 7 chrX 671075 671481 -176302659 - MSTB1 LTR MaLR 0 432 21 2372 114 0 0 chrX 671564 671872 -176302268 - AluSx SINE Alu -4 308 1 281 232 24 19 chrX 672653 672760 -176301380 - MLT1C LTR MaLR -353 114 31 896 97 0 0 chrX 672818 672931 -176301209 + AluSg SINE Alu 1 113 -197 989 85 0 0 chrX 672931 673060 -176301080 + L1PA8 LINE L1 6034 6162 -10 421 217 0 23 chrX 673082 673207 -176300933 - MLT1D LTR MaLR -10 495 260 846 122 0 0 chrX 673207 673330 -176300810 + AluSp/q SINE Alu 190 312 -1 2087 104 10 23 chrX 673615 673922 -176300218 + AluSc SINE Alu 6 308 -1 562 75 54 21 chrX 674062 674155 -176299985 + MER4A LTR ERV1 3 98 -566 257 59 0 0 chrX 674167 674201 -176299939 + Alu SINE Alu 1 34 -274 192 182 23 23 chrX 874333 874377 -176099763 + MIR SINE MIR 219 262 0 211 329 98 0 chrX 874393 874475 -176099665 - L2 LINE L2 -36 3236 3147 476 337 52 95 chrX 874486 875002 -176099138 + L3 LINE CR1 832 1325 -252 26 0 0 0 chrX 875130 875156 -176098984 + AT_rich Low_complexity Low_complexity 1 26 0 387 324 92 0 chrX 875237 875410 -176098730 - L2 LINE L2 -5 3308 3120 342 263 123 45 chrX 875548 875727 -176098413 + MIR SINE MIR 21 213 -49 801 330 77 21 chrX 875779 876246 -176097894 + LTR33 LTR ERVL 29 521 0 258 337 0 10 chrX 876911 877009 -176097131 + ERVL LTR ERVL 835 931 -4833 619 314 29 54 chrX 877632 877947 -176096193 + ERVL LTR ERVL 1492 1798 -3966 374 311 79 18 chrX 877982 878146 -176095994 + ERVL LTR ERVL 2425 2598 -3166 349 232 112 90 chrX 878374 878593 -176095547 + MLT1J1 LTR MaLR 281 444 -2 606 311 100 37 chrX 878707 879138 -176095002 + L1MC4a LINE L1 5437 5894 -1914 216 67 0 0 chrX 879184 879214 -176094926 + (CA)n Simple_repeat Simple_repeat 1 30 0 748 216 21 53 chrX 880470 880660 -176093480 + MER5A DNA MER1_type 2 185 -4 353 322 54 21 chrX 881167 881409 -176092731 - L1ME LINE L1 -502 5664 5415 246 344 70 13 chrX 881461 881618 -176092522 - MIR SINE MIR -15 247 82 23 0 0 0 chrX 881964 881987 -176092153 + AT_rich Low_complexity Low_complexity 1 23 0 382 279 0 18 chrX 882052 882163 -176091977 - MIR SINE MIR -2 260 152 260 163 0 0 chrX 882163 882212 -176091928 + MER50 LTR ERV1 1 49 -685 864 80 0 0 chrX 882298 882410 -176091730 - AluSg/x SINE Alu -12 298 187 707 194 0 0 chrX 882413 882537 -176091603 + AluJo/FRAM SINE Alu 171 294 -18 25 0 0 0 chrX 882553 882578 -176091562 + AT_rich Low_complexity Low_complexity 1 25 0 6210 161 17 13 chrX 882613 882654 -176091486 + L1MA4 LINE L1 4135 4174 -2126 1665 140 75 7 chrX 882654 882946 -176091194 + AluSx SINE Alu 1 312 0 6210 161 17 13 chrX 882946 884719 -176089421 + L1MA4 LINE L1 4174 5958 -342 368 176 55 0 chrX 884747 884838 -176089302 + L1MB3 LINE L1 6087 6182 -1 22 0 0 0 chrX 885682 885704 -176088436 + AT_rich Low_complexity Low_complexity 1 22 0 1355 322 70 27 chrX 885962 886589 -176087551 + L1MA6 LINE L1 4 657 -6132 4143 206 19 53 chrX 886944 887990 -176086150 + L1MA6 LINE L1 1322 2331 -4458 * 11115 183 57 8 chrX 887982 889046 -176085094 + L1MA6 LINE L1 3266 4276 -2666 6383 50 10 0 chrX 889046 889847 -176084293 + L1PA5 LINE L1 5343 6151 -3 11115 183 57 8 chrX 889847 891801 -176082339 + L1MA6 LINE L1 4276 6132 -810 198 0 0 0 chrX 891801 891823 -176082317 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 345 24 0 0 chrX 891822 891864 -176082276 + (GA)n Simple_repeat Simple_repeat 2 43 0 11115 183 57 8 chrX 891823 892346 -176081794 + L1MA6 LINE L1 6132 6942 0 438 53 0 0 chrX 892688 892745 -176081395 + (CA)n Simple_repeat Simple_repeat 1 57 0 207 332 63 45 chrX 893062 893285 -176080855 + L2 LINE L2 2622 2848 -466 187 292 0 0 chrX 893294 893342 -176080798 + L2 LINE L2 2712 2759 -555 263 255 51 61 chrX 893703 893801 -176080339 + L2 LINE L2 3174 3270 -2 190 229 21 21 chrX 894731 894779 -176079361 + L2 LINE L2 3262 3309 -4 1960 268 38 13 chrX 894873 895080 -176079060 + MLT1F LTR MaLR 1 201 -341 1572 253 49 26 chrX 895080 895587 -176078553 - LTR40a LTR ERVL 0 519 1 1960 268 38 13 chrX 895587 895908 -176078232 + MLT1F LTR MaLR 201 542 0 261 302 27 27 chrX 895909 896058 -176078082 + MLT1F-int LTR MaLR 2 150 -1221 466 339 26 0 chrX 896081 896311 -176077829 + MLT1F-int LTR MaLR 277 512 -859 259 325 100 25 chrX 897568 897688 -176076452 + MIR SINE MIR 16 144 -64 7215 129 18 0 chrX 897692 898803 -176075337 - Tigger1 DNA MER2_type 0 2418 1288 4431 160 62 7 chrX 898805 899281 -176074859 - Tigger1 DNA MER2_type -1567 851 312 189 0 0 0 chrX 899281 899302 -176074838 + (GA)n Simple_repeat Simple_repeat 2 22 0 4431 160 62 7 chrX 899302 899631 -176074509 - Tigger1 DNA MER2_type -2106 312 2 201 74 0 0 chrX 900518 900545 -176073595 + (TG)n Simple_repeat Simple_repeat 1 27 0 227 161 18 0 chrX 901199 901255 -176072885 + (TA)n Simple_repeat Simple_repeat 2 58 0 444 319 52 7 chrX 901868 902003 -176072137 - MIR3 SINE MIR -38 170 30 4654 40 43 0 chrX 902297 902880 -176071260 + LTR14B LTR ERVK 1 608 0 29 0 0 0 chrX 903260 903289 -176070851 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 904905 904933 -176069207 + AT_rich Low_complexity Low_complexity 1 28 0 207 281 317 0 chrX 905028 905110 -176069030 - L2 LINE L2 0 3313 3206 340 323 52 13 chrX 905226 905381 -176068759 + HAL1b LINE L1 1187 1347 -1 308 331 18 49 chrX 905635 905798 -176068342 - MIR SINE MIR -65 197 40 199 407 58 39 chrX 906500 906859 -176067281 + L2 LINE L2 2809 3174 -98 240 306 52 77 chrX 907751 907999 -176066141 - LTR33 LTR ERVL -1 520 279 1345 199 0 65 chrX 908294 908615 -176065525 - AluJo SINE Alu -12 300 1 293 305 21 59 chrX 908682 908869 -176065271 - HERVL LTR ERVL -326 5328 5149 22 35 0 0 chrX 909761 909790 -176064350 + GC_rich Low_complexity Low_complexity 1 29 0 1633 158 0 26 chrX 909919 910192 -176063948 - AluSx SINE Alu -46 266 1 351 241 80 58 chrX 913053 913190 -176060950 - MIR SINE MIR -56 206 67 348 273 115 22 chrX 913672 913811 -176060329 - MIR SINE MIR -3 259 108 405 353 98 5 chrX 914404 914628 -176059512 + MIR SINE MIR 12 256 -6 21 0 0 0 chrX 918234 918255 -176055885 + AT_rich Low_complexity Low_complexity 1 21 0 283 313 92 19 chrX 918687 918949 -176055191 + L1M4 LINE L1 4767 5047 -1099 1504 204 30 9 chrX 918987 919320 -176054820 - Charlie1b DNA MER1_type -176 347 8 27 0 0 0 chrX 920266 920293 -176053847 + AT_rich Low_complexity Low_complexity 1 27 0 192 234 0 0 chrX 920891 920938 -176053202 + CT-rich Low_complexity Low_complexity 6 52 0 5519 208 20 27 chrX 920992 921076 -176053064 + Cheshire DNA MER1_type 10 93 -2327 2146 107 10 0 chrX 921076 921367 -176052773 - AluSg SINE Alu -16 294 1 5519 208 20 27 chrX 921367 922507 -176051633 + Cheshire DNA MER1_type 93 1225 -1195 2955 179 44 123 chrX 922497 923470 -176050670 + Cheshire DNA MER1_type 1486 2377 -43 * 2323 89 13 0 chrX 923470 923773 -176050367 - AluY SINE Alu -4 307 1 2955 179 44 123 chrX 923773 923814 -176050326 + Cheshire DNA MER1_type 2377 2420 0 2459 101 28 6 chrX 924973 925329 -176048811 + THE1B LTR MaLR 1 364 0 10603 107 33 0 chrX 925329 926858 -176047282 + THE1B-int LTR MaLR 1 1580 0 2466 124 17 0 chrX 926861 927216 -176046924 + THE1B LTR MaLR 4 364 0 225 232 0 0 chrX 927818 927887 -176046253 + (TGAA)n Simple_repeat Simple_repeat 1 69 0 24 0 0 0 chrX 928875 928899 -176045241 + AT_rich Low_complexity Low_complexity 1 24 0 2485 62 0 10 chrX 929394 929700 -176044440 - AluY SINE Alu -8 303 1 516 283 61 53 chrX 931343 931703 -176042437 - MER34B LTR ERV1 0 565 203 180 300 117 42 chrX 931830 931950 -176042190 + L2 LINE L2 3140 3268 -4 214 343 14 0 chrX 932283 932356 -176041784 + MIR SINE MIR 150 223 -39 567 186 5 147 chrX 932879 933083 -176041057 + L1MD3 LINE L1 7322 7496 -499 344 207 103 0 chrX 933078 933165 -176040975 + L1MC3 LINE L1 7357 7452 -333 * 396 0 0 0 chrX 933167 933211 -176040929 + (CA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chrX 933220 933241 -176040899 + (GA)n Simple_repeat Simple_repeat 2 22 0 25852 107 7 6 chrX 933260 933890 -176040250 + L1P LINE L1 1228 1856 -4290 2346 106 0 0 chrX 933890 934193 -176039947 + AluSg SINE Alu 3 305 -5 25852 107 7 6 chrX 934193 937470 -176036670 + L1P LINE L1 1856 5139 -1007 29 47 0 0 chrX 937472 937515 -176036625 + AT_rich Low_complexity Low_complexity 1 43 0 339 184 23 0 chrX 937612 937699 -176036441 + L1ME4a LINE L1 5977 6065 -56 2238 103 0 17 chrX 938404 938705 -176035435 + AluSx SINE Alu 1 296 -16 1710 176 7 14 chrX 938720 939010 -176035130 + AluJo SINE Alu 6 293 -19 25 0 0 0 chrX 939010 939035 -176035105 + AT_rich Low_complexity Low_complexity 1 25 0 885 174 97 0 chrX 939536 939732 -176034408 + MER33 DNA MER1_type 5 219 -105 218 292 0 15 chrX 940271 940336 -176033804 + GA-rich Low_complexity Low_complexity 1 64 0 3337 128 31 10 chrX 940381 940897 -176033243 - MER1A DNA MER1_type 0 527 1 23 0 0 0 chrX 941692 941715 -176032425 + AT_rich Low_complexity Low_complexity 1 23 0 464 133 8 125 chrX 941732 941860 -176032280 + MER33 DNA MER1_type 251 363 0 512 232 26 45 chrX 942516 942671 -176031469 - L2 LINE L2 0 3313 3162 27 29 0 0 chrX 943738 943772 -176030368 + AT_rich Low_complexity Low_complexity 1 34 0 2016 197 27 15 chrX 944230 944642 -176029498 + MER74A LTR ERVL 128 544 -14 361 238 98 14 chrX 944764 944907 -176029233 + L1MCa LINE L1 1345 1499 -4927 1689 171 13 25 chrX 945175 945490 -176028650 + AluJo SINE Alu 1 311 -1 327 167 0 0 chrX 946053 946119 -176028021 + T-rich Low_complexity Low_complexity 1 66 0 195 42 0 0 chrX 946162 946186 -176027954 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 34 0 0 0 chrX 946737 946771 -176027369 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chrX 946984 947008 -176027132 + (A)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chrX 947601 947632 -176026508 + AT_rich Low_complexity Low_complexity 1 31 0 1806 184 3 0 chrX 947684 947994 -176026146 + AluJo SINE Alu 1 311 -1 206 362 41 53 chrX 948197 948515 -176025625 - L2 LINE L2 -957 2357 2044 243 257 0 29 chrX 949205 949275 -176024865 + Charlie8 DNA MER1_type 2344 2411 -6 1583 163 10 17 chrX 950809 951098 -176023042 - AluJb SINE Alu 0 312 26 26 30 0 0 chrX 951201 951234 -176022906 + AT_rich Low_complexity Low_complexity 1 33 0 1505 192 23 23 chrX 951391 951698 -176022442 + AluSx SINE Alu 1 307 -5 21 36 0 0 chrX 952344 952372 -176021768 + AT_rich Low_complexity Low_complexity 1 28 0 1483 213 3 17 chrX 953742 954042 -176020098 - AluJo SINE Alu -16 296 1 240 179 0 0 chrX 954378 954417 -176019723 + Charlie5 DNA MER1_type 12 50 -2562 1280 109 14 14 chrX 954539 954750 -176019390 + L1MA5A LINE L1 6086 6296 -1 286 284 11 0 chrX 954751 954839 -176019301 + L1ME1 LINE L1 6028 6116 -50 1975 144 13 3 chrX 954845 955143 -176018997 + AluJb SINE Alu 5 305 -7 2192 101 7 0 chrX 955220 955522 -176018618 + AluSg SINE Alu 1 304 0 850 148 42 64 chrX 955554 955790 -176018350 + Charlie5 DNA MER1_type 2355 2585 -27 193 353 0 0 chrX 955970 956038 -176018102 - L2 LINE L2 -8 3264 3197 362 354 36 31 chrX 956041 956264 -176017876 - L2 LINE L2 -399 2915 2692 429 242 81 12 chrX 956734 956895 -176017245 + L1ME4a LINE L1 5929 6100 -21 1203 318 95 29 chrX 957145 958019 -176016121 + L2 LINE L2 2149 3081 -232 681 289 68 17 chrX 958560 958653 -176015487 - MIR SINE MIR -14 248 161 2042 157 8 45 chrX 958653 958946 -176015194 + MER47A DNA MER2_type 1 278 -2045 2236 102 10 0 chrX 958946 959241 -176014899 - AluSx SINE Alu -14 298 1 2042 157 8 45 chrX 959241 959324 -176014816 + MER47A DNA MER2_type 278 363 -3 681 289 68 17 chrX 959324 959465 -176014675 - MIR SINE MIR -101 161 2 861 232 91 75 chrX 960692 960998 -176013142 - MLT1D LTR MaLR 0 505 190 2083 137 7 0 chrX 960998 961290 -176012850 - AluSx SINE Alu -18 294 1 861 232 91 75 chrX 961290 961367 -176012773 - MLT1D LTR MaLR -315 190 116 284 296 138 37 chrX 962161 962350 -176011790 - MLT1J LTR MaLR -261 250 43 292 339 18 18 chrX 963678 963790 -176010350 - L2 LINE L2 -609 2705 2594 2635 140 22 36 chrX 963799 964292 -176009848 - LTR29 LTR ERV1 0 622 137 242 29 29 0 chrX 964707 964742 -176009398 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 1589 174 19 32 chrX 965709 966019 -176008121 + AluJo SINE Alu 1 306 -6 2811 93 0 3 chrX 966536 966911 -176007229 + THE1C LTR MaLR 1 374 -1 315 0 0 0 chrX 967111 967146 -176006994 + (A)n Simple_repeat Simple_repeat 1 35 0 28 61 0 0 chrX 968516 968565 -176005575 + AT_rich Low_complexity Low_complexity 1 49 0 480 18 0 0 chrX 969407 969464 -176004676 + (CA)n Simple_repeat Simple_repeat 2 58 0 364 329 21 14 chrX 969855 969995 -176004145 + MIR3 SINE MIR 6 146 -62 367 321 142 14 chrX 970399 970695 -176003445 + L2 LINE L2 2843 3176 -137 556 320 109 68 chrX 970699 971555 -176002585 + L2 LINE L2 2436 3313 0 242 269 6 154 chrX 971559 971715 -176002425 + L2 LINE L2 3174 3306 -7 815 313 55 13 chrX 972203 972571 -176001569 + LTR16A LTR ERVL 19 429 -21 274 156 22 0 chrX 973329 973374 -176000766 + MLT1D LTR MaLR 1 46 -459 321 293 101 0 chrX 974473 974572 -175999568 - MIR3 SINE MIR -48 160 52 649 134 34 8 chrX 975878 975994 -175998146 + MLT2C1 LTR ERVL 3 121 -276 3228 114 37 18 chrX 975994 976502 -175997638 + LTR8 LTR ERV1 1 518 -173 1334 112 31 10 chrX 976538 976734 -175997406 + LTR8 LTR ERV1 492 691 0 1032 199 57 27 chrX 976737 976952 -175997188 + MLT2C1 LTR ERVL 128 354 -43 182 37 37 0 chrX 976952 976979 -175997161 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1032 199 57 27 chrX 976979 977025 -175997115 + MLT2C1 LTR ERVL 354 397 0 252 130 0 0 chrX 977453 977499 -175996641 + (GA)n Simple_repeat Simple_repeat 1 46 0 2778 124 76 68 chrX 977969 978510 -175995630 - LTR10A LTR ERV1 -64 545 1 1889 236 76 9 chrX 978515 978976 -175995164 - MLT1F LTR MaLR -50 492 1 2214 95 62 9 chrX 979438 979775 -175994365 - THE1A LTR MaLR 0 355 1 288 401 37 0 chrX 980589 980751 -175993389 + MIR3 SINE MIR 10 177 -31 1356 167 51 31 chrX 981864 982157 -175991983 + MLT1B LTR MaLR 1 299 -91 343 107 89 0 chrX 982157 982213 -175991927 - MLT1A2 LTR MaLR -1 389 329 1927 109 34 0 chrX 982215 982482 -175991658 - AluSc SINE Alu -8 301 26 652 181 83 0 chrX 982586 982730 -175991410 - MLT1A2 LTR MaLR -218 156 1 511 131 107 0 chrX 982732 982816 -175991324 + MLT1B LTR MaLR 297 389 -1 711 226 6 0 chrX 982868 983036 -175991104 - MER97b DNA MER1_type? -321 732 564 1385 162 9 4 chrX 983074 983303 -175990837 - MER46A DNA MER2_type -6 230 1 863 201 242 0 chrX 983303 983547 -175990593 - MER58B DNA MER1_type -35 306 4 1280 229 87 0 chrX 983550 983614 -175990526 - MER97a DNA MER1_type? -325 569 512 1668 148 55 10 chrX 983614 983904 -175990236 - AluJo SINE Alu -1 311 9 1280 229 87 0 chrX 983904 984184 -175989956 - MER97a DNA MER1_type? -382 512 195 367 244 6 21 chrX 984273 984440 -175989700 - MER97a DNA MER1_type? -848 205 4 333 0 0 0 chrX 984943 984980 -175989160 + (TG)n Simple_repeat Simple_repeat 1 37 0 460 175 93 10 chrX 985667 985764 -175988376 - MIR SINE MIR -74 188 84 246 337 116 0 chrX 987777 987863 -175986277 - MIR SINE MIR -76 132 37 1586 101 28 15 chrX 989617 989921 -175984219 + MER61A LTR ERV1 1 343 0 846 201 0 27 chrX 990435 990619 -175983521 - AluJb SINE Alu -7 305 127 5779 190 66 36 chrX 990767 992172 -175981968 - Charlie1a DNA MER1_type -1 1454 7 573 251 18 35 chrX 992724 992895 -175981245 - MIR SINE MIR 0 262 95 533 307 76 44 chrX 992895 993710 -175980430 + L1MC/D LINE L1 4494 5361 -1122 2442 80 3 0 chrX 993710 994021 -175980119 + AluSp SINE Alu 1 312 -1 533 307 76 44 chrX 994021 994399 -175979741 + L1MC/D LINE L1 5361 5725 -758 213 161 54 11 chrX 994760 994853 -175979287 + (TA)n Simple_repeat Simple_repeat 2 98 0 276 289 94 25 chrX 995061 995220 -175978920 - L2 LINE L2 -169 3103 2934 2426 125 11 19 chrX 995656 996033 -175978107 - THE1C LTR MaLR 0 375 2 9321 124 46 43 chrX 996034 997609 -175976531 - THE1C-int LTR MaLR 0 1580 1 2282 117 35 16 chrX 997609 997976 -175976164 - THE1C LTR MaLR 0 375 2 1007 174 92 5 chrX 998347 998542 -175975598 - MLT1B LTR MaLR 0 390 179 1164 188 0 22 chrX 998573 998802 -175975338 - AluJo SINE Alu -3 309 86 740 224 0 46 chrX 998830 999004 -175975136 - MLT1B LTR MaLR -224 166 1 216 122 0 0 chrX 999012 999053 -175975087 + (T)n Simple_repeat Simple_repeat 1 41 0 1460 179 10 57 chrX 999279 999580 -175974560 - AluJb SINE Alu -21 291 5 181 212 0 0 chrX 999619 999652 -175974488 - MIR SINE MIR -64 144 112 1375 215 90 68 chrX 999707 1000332 -175973808 - LTR8A LTR ERV1 0 727 55 4646 152 21 28 chrX 1000363 1001327 -175972813 - MER11C LTR ERVK -25 1046 1 252 68 136 23 chrX 1001336 1001380 -175972760 - LTR8 LTR ERV1 -642 49 1 2343 195 12 82 chrX 1001471 1002067 -175972073 - MLT2B3 LTR ERVL 0 554 1 199 185 0 31 chrX 1002075 1002140 -175972000 + (CAT)n Simple_repeat Simple_repeat 1 63 0 291 184 345 0 chrX 1003240 1003327 -175970813 + L2 LINE L2 3195 3311 -2 186 287 115 11 chrX 1003795 1003882 -175970258 + MIR SINE MIR 36 131 -131 2034 117 3 0 chrX 1004190 1004473 -175969667 + AluSq SINE Alu 17 300 -13 290 255 78 54 chrX 1005349 1005553 -175968587 - L1P5 LINE L1 -580 5574 5366 457 200 0 0 chrX 1005576 1005651 -175968489 + MER1B DNA MER1_type 7 81 -256 * 1057 131 17 40 chrX 1005645 1005820 -175968320 + MER1B DNA MER1_type 169 339 0 200 143 24 0 chrX 1006297 1006339 -175967801 + (TA)n Simple_repeat Simple_repeat 1 43 0 433 232 119 81 chrX 1009122 1009307 -175964833 + MIR SINE MIR 28 219 -43 250 364 50 0 chrX 1009336 1009476 -175964664 + LTR16A LTR ERVL 225 371 -79 759 220 47 86 chrX 1009989 1010056 -175964084 - MIR SINE MIR 0 262 194 778 172 8 15 chrX 1010056 1010190 -175963950 - FLAM_C SINE Alu 0 133 1 759 220 47 86 chrX 1010190 1010377 -175963763 - MIR SINE MIR -68 194 18 453 233 0 78 chrX 1012131 1012247 -175961893 - MER69 DNA AcHobo -70 2456 1 515 264 49 28 chrX 1012420 1012564 -175961576 - MER63A DNA MER1_type 0 210 64 638 299 118 50 chrX 1012947 1013345 -175960795 - L2 LINE L2 0 3313 2889 494 349 45 65 chrX 1013331 1013583 -175960557 - L2 LINE L2 -356 2958 2718 * 1377 172 122 11 chrX 1013583 1013845 -175960295 - AluJb SINE Alu -21 291 1 494 349 45 65 chrX 1013845 1014054 -175960086 - L2 LINE L2 -596 2718 2506 1955 137 38 3 chrX 1014054 1014346 -175959794 - AluSx SINE Alu -10 302 1 1515 214 0 22 chrX 1014406 1014724 -175959416 + AluJo SINE Alu 1 311 -1 246 225 0 14 chrX 1015586 1015657 -175958483 - L1MC4 LINE L1 -1320 6722 6653 233 292 0 0 chrX 1015624 1015696 -175958444 + L1MC4 LINE L1 6614 6685 -1357 * 2252 99 0 0 chrX 1015697 1015979 -175958161 - AluSx SINE Alu -29 283 2 22 0 0 0 chrX 1016370 1016392 -175957748 + AT_rich Low_complexity Low_complexity 1 22 0 447 265 112 6 chrX 1016551 1016721 -175957419 + MIR SINE MIR 2 189 -73 1126 298 24 38 chrX 1017352 1017805 -175956335 + L2 LINE L2 1804 2250 -1064 1217 254 95 40 chrX 1017808 1018333 -175955807 + MLT1G1 LTR MaLR 1 595 0 1107 286 160 25 chrX 1018346 1019200 -175954940 + L2 LINE L2 2262 3229 -84 1821 233 37 31 chrX 1019655 1020165 -175953975 - LTR40a LTR ERVL 0 519 7 1226 207 47 76 chrX 1020169 1020551 -175953589 + MLT1A2 LTR MaLR 4 374 0 1602 179 26 29 chrX 1020609 1020917 -175953223 + AluJo SINE Alu 1 307 -5 26 30 0 0 chrX 1021055 1021088 -175953052 + AT_rich Low_complexity Low_complexity 1 33 0 197 327 71 44 chrX 1021280 1021393 -175952747 + MIR SINE MIR 68 183 -79 231 393 131 35 chrX 1021656 1021969 -175952171 + L2 LINE L2 2925 3267 -5 726 309 36 12 chrX 1022056 1022308 -175951832 + MIR SINE MIR 5 262 0 432 0 0 0 chrX 1023759 1023807 -175950333 + (TG)n Simple_repeat Simple_repeat 2 49 0 429 20 0 0 chrX 1024508 1024558 -175949582 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 346 338 101 31 chrX 1025611 1025839 -175948301 + MIR SINE MIR 9 252 -10 502 324 49 0 chrX 1025992 1026177 -175947963 + MIR SINE MIR 3 196 -66 2368 92 0 0 chrX 1026707 1027000 -175947140 + AluSg SINE Alu 1 293 -17 24 32 0 0 chrX 1027887 1027918 -175946222 + AT_rich Low_complexity Low_complexity 1 31 0 660 310 51 0 chrX 1028353 1028550 -175945590 + MIR SINE MIR 25 231 -31 233 266 25 0 chrX 1028574 1028653 -175945487 + (TA)n Simple_repeat Simple_repeat 2 82 0 306 0 0 0 chrX 1029670 1029704 -175944436 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 1029704 1029733 -175944407 + AT_rich Low_complexity Low_complexity 1 29 0 25 83 0 0 chrX 1030022 1030082 -175944058 + AT_rich Low_complexity Low_complexity 1 60 0 377 237 43 36 chrX 1032147 1032286 -175941854 + MIR SINE MIR 13 152 -110 954 238 28 68 chrX 1032739 1033063 -175941077 + MER93a LTR ERV1 92 402 0 651 355 105 13 chrX 1033207 1033598 -175940542 + L2 LINE L2 793 1219 -2095 840 186 61 85 chrX 1033759 1034006 -175940134 - MER57A LTR ERV1 -28 375 135 3374 159 5 5 chrX 1034024 1034616 -175939524 - L1PA16 LINE L1 -3 6163 5572 188 371 52 35 chrX 1034950 1035066 -175939074 + L2 LINE L2 3142 3259 -13 396 318 12 29 chrX 1035218 1035388 -175938752 + MIR SINE MIR 1 167 -95 2096 61 0 58 chrX 1035638 1035933 -175938207 - L1PA7 LINE L1 -11 6143 5866 11928 114 9 27 chrX 1035958 1038416 -175935724 - L1P3 LINE L1 -4001 2460 2 25 65 0 0 chrX 1038689 1038735 -175935405 + AT_rich Low_complexity Low_complexity 1 46 0 2411 115 120 5 chrX 1039607 1039991 -175934149 - MSTA LTR MaLR 0 428 1 254 202 24 36 chrX 1040393 1040477 -175933663 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 195 386 64 0 chrX 1042707 1042847 -175931293 - MIR SINE MIR -17 245 97 213 182 68 0 chrX 1042898 1042942 -175931198 + MIR SINE MIR 122 168 -94 2526 44 3 0 chrX 1043206 1043501 -175930639 - AluY SINE Alu -15 296 1 230 313 109 55 chrX 1043646 1043774 -175930366 + MIR3 SINE MIR 51 185 -23 2197 101 24 3 chrX 1144113 1144409 -175829731 - AluSg SINE Alu -8 302 1 649 165 0 10 chrX 1145569 1145819 -175828321 + AluJb SINE Alu 11 294 -18 368 236 138 98 chrX 1145977 1145989 -175828151 - MIR SINE MIR -25 237 227 4722 106 25 63 chrX 1145989 1146799 -175827341 - MER4E LTR ERV1 0 779 1 368 236 138 98 chrX 1146799 1146956 -175827184 - MIR SINE MIR -35 227 54 2288 101 0 0 chrX 1146956 1147252 -175826888 + AluSg SINE Alu 1 296 -14 368 236 138 98 chrX 1147252 1147306 -175826834 - MIR SINE MIR -208 54 4 22 25 0 25 chrX 1147850 1147868 -175826272 + AT_rich Low_complexity Low_complexity 1 18 -21 1977 146 0 7 chrX 1147868 1148155 -175825985 + AluSx SINE Alu 1 285 -27 22 25 0 25 chrX 1148155 1148176 -175825964 + AT_rich Low_complexity Low_complexity 18 39 0 457 279 127 12 chrX 1148377 1148542 -175825598 + MER5A DNA MER1_type 6 189 0 180 354 34 41 chrX 1148990 1149137 -175825003 + L2 LINE L2 333 478 -2836 23 68 0 0 chrX 1149231 1149275 -175824865 + AT_rich Low_complexity Low_complexity 1 44 0 324 299 15 104 chrX 1149592 1149793 -175824347 - MER102b DNA MER1_type 0 341 159 2394 59 3 3 chrX 1149793 1150081 -175824059 - AluSp SINE Alu -16 297 10 1277 124 0 83 chrX 1150139 1150356 -175823784 - AluSx SINE Alu -10 302 104 710 36 0 0 chrX 1150356 1150440 -175823700 - AluY SINE Alu -13 298 215 739 119 0 51 chrX 1150440 1150558 -175823582 - AluSq/x SINE Alu -196 116 5 1843 136 52 0 chrX 1150610 1150896 -175823244 + AluSx SINE Alu 1 301 -11 870 227 76 29 chrX 1150896 1151239 -175822901 + L1MC4 LINE L1 7211 7569 -473 599 180 0 9 chrX 1151247 1151358 -175822782 + Tigger7 DNA MER2_type 2370 2479 -8 2364 90 0 3 chrX 1152381 1152681 -175821459 - AluSc SINE Alu -10 299 1 225 241 0 0 chrX 1152760 1152814 -175821326 - MER53 DNA DNA -135 54 1 426 244 119 19 chrX 1152876 1153036 -175821104 + MER102a DNA MER1_type 135 310 -20 216 0 0 0 chrX 1153205 1153229 -175820911 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1277 108 5 78 chrX 1153239 1153443 -175820697 - AluSg/x SINE Alu -23 289 101 1513 163 29 56 chrX 1153654 1153960 -175820180 - AluJb SINE Alu -14 298 1 29 0 0 0 chrX 1155544 1155573 -175818567 + AT_rich Low_complexity Low_complexity 1 29 0 1906 152 3 29 chrX 1155722 1156031 -175818109 - AluSx SINE Alu -11 301 1 39 50 0 0 chrX 1156586 1156646 -175817494 + AT_rich Low_complexity Low_complexity 1 60 0 1894 169 10 0 chrX 1156681 1156982 -175817158 - AluJo SINE Alu -8 304 1 1303 184 41 68 chrX 1157120 1157413 -175816727 - AluJo SINE Alu -23 289 5 678 211 0 0 chrX 1157481 1157604 -175816536 - AluJb SINE Alu -181 131 9 375 154 0 0 chrX 1157863 1157928 -175816212 + T-rich Low_complexity Low_complexity 5 69 0 824 274 115 13 chrX 1158184 1158498 -175815642 + MLT2F LTR ERVL 17 362 -301 3461 269 59 14 chrX 1158539 1159589 -175814551 + ERVL LTR ERVL 2644 3740 -2024 1198 220 4 4 chrX 1159654 1159895 -175814245 + ERVL LTR ERVL 4138 4378 -1386 1776 112 68 4 chrX 1160048 1160326 -175813814 + AluSc SINE Alu 1 296 -13 222 37 0 0 chrX 1161310 1161337 -175812803 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2045 105 0 3 chrX 1161416 1161701 -175812439 - AluSx SINE Alu -5 307 24 1868 194 0 0 chrX 1162871 1163181 -175810959 - AluSx SINE Alu 0 312 3 204 40 0 0 chrX 1163373 1163398 -175810742 + (A)n Simple_repeat Simple_repeat 1 25 0 2334 93 0 10 chrX 1164863 1165173 -175808967 - AluSg1 SINE Alu -2 307 1 183 184 0 0 chrX 1165895 1165933 -175808207 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 262 222 0 19 chrX 1167997 1168051 -175806089 + L2 LINE L2 3216 3268 -4 1857 169 0 10 chrX 1168228 1168542 -175805598 - AluJb SINE Alu -1 311 1 492 279 60 40 chrX 1168723 1168929 -175805211 + MIR SINE MIR 44 257 -5 2101 143 0 0 chrX 1169600 1169893 -175804247 - AluSq SINE Alu -19 294 2 190 236 132 47 chrX 1171928 1172034 -175802106 + MIR SINE MIR 31 145 -63 1037 173 0 6 chrX 1172412 1172585 -175801555 + AluJb SINE Alu 132 303 -9 2107 176 2 30 chrX 1172651 1173054 -175801086 + MLT2D LTR ERVL 10 401 -13 211 337 157 11 chrX 1174217 1174395 -175799745 - MIR SINE MIR -1 261 58 1949 164 3 0 chrX 1175063 1175368 -175798772 + AluJb SINE Alu 1 306 -6 531 247 34 22 chrX 1175556 1175734 -175798406 + MER104 DNA MER2_type 1 180 0 972 213 98 9 chrX 1175788 1176013 -175798127 - AluJo SINE Alu -44 268 24 361 242 8 94 chrX 1176222 1176350 -175797790 - MIR SINE MIR -71 191 75 2232 123 0 0 chrX 1176356 1176657 -175797483 + AluSq SINE Alu 1 301 -12 1874 156 10 0 chrX 1177283 1177578 -175796562 - AluJb SINE Alu -14 298 1 1814 135 0 48 chrX 1177799 1178112 -175796028 + AluSx SINE Alu 9 307 0 219 36 0 0 chrX 1179113 1179141 -175794999 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 228 297 144 25 chrX 1179141 1179259 -175794881 - MIR3 SINE MIR -62 146 15 2255 113 0 3 chrX 1179293 1179595 -175794545 + AluSx SINE Alu 1 301 -11 396 0 0 0 chrX 1180329 1180373 -175793767 + (TG)n Simple_repeat Simple_repeat 1 44 0 2191 93 0 4 chrX 1180373 1180653 -175793487 - AluSx SINE Alu -33 279 1 1141 104 46 20 chrX 1181175 1181492 -175792648 - THE1C LTR MaLR 0 375 1 2071 121 13 7 chrX 1181523 1181830 -175792310 + AluY SINE Alu 1 309 -2 235 273 143 0 chrX 1181833 1181910 -175792230 + MIR3 SINE MIR 120 207 -1 1748 170 3 7 chrX 1182493 1182787 -175791353 + AluJb SINE Alu 2 294 -18 25 31 0 0 chrX 1182983 1183015 -175791125 + AT_rich Low_complexity Low_complexity 1 32 0 2028 115 63 0 chrX 1183751 1184037 -175790103 + AluSg SINE Alu 1 304 -6 322 279 7 20 chrX 1184154 1184270 -175789870 + L1ME4a LINE L1 5778 5893 -228 1008 178 6 18 chrX 1184270 1184439 -175789701 + FAM SINE Alu 1 167 -8 322 279 7 20 chrX 1184439 1184469 -175789671 + L1ME4a LINE L1 5893 5922 -199 353 289 0 0 chrX 1184585 1184675 -175789465 - L1MC4 LINE L1 -1339 6703 6614 338 272 0 22 chrX 1184595 1184687 -175789453 + L1MC4 LINE L1 6614 6703 -1339 * 180 111 0 0 chrX 1184687 1184714 -175789426 + (TA)n Simple_repeat Simple_repeat 2 28 0 485 316 119 14 chrX 1184830 1185048 -175789092 - MIR SINE MIR -16 246 6 21 0 0 0 chrX 1185694 1185715 -175788425 + AT_rich Low_complexity Low_complexity 1 21 0 685 247 37 0 chrX 1186100 1186262 -175787878 + MER45A DNA AcHobo 6 173 -5 189 250 0 0 chrX 1186266 1186310 -175787830 - L2 LINE L2 -62 3251 3208 484 165 48 10 chrX 1186474 1186577 -175787563 + AluSq/x SINE Alu 1 107 -206 1086 157 0 12 chrX 1186764 1186936 -175787204 + AluSg/x SINE Alu 128 297 -15 2282 71 9 52 chrX 1187762 1188088 -175786052 + AluSx SINE Alu 1 312 0 1669 171 21 4 chrX 1189443 1189724 -175784416 - AluJb SINE Alu -26 286 1 1901 178 0 9 chrX 1191538 1191853 -175782287 - AluJo SINE Alu 0 312 1 2234 89 4 0 chrX 1192054 1192334 -175781806 - AluSq SINE Alu -32 281 1 797 258 40 74 chrX 1192462 1192842 -175781298 - L1MC4 LINE L1 -1865 5943 5577 286 196 72 21 chrX 1192854 1192951 -175781189 - L1MC4 LINE L1 -2300 5508 5407 2037 161 0 0 chrX 1193138 1193443 -175780697 + AluSx SINE Alu 1 305 -7 27 62 0 0 chrX 1193630 1193678 -175780462 + AT_rich Low_complexity Low_complexity 1 48 0 1821 182 3 6 chrX 1193893 1194265 -175779875 + AluJo SINE Alu 1 371 0 894 184 20 0 chrX 1194510 1194657 -175779483 + FRAM SINE Alu 1 146 -30 29 0 0 0 chrX 1194673 1194702 -175779438 + AT_rich Low_complexity Low_complexity 1 29 0 270 224 118 0 chrX 1194803 1194879 -175779261 - L2 LINE L2 -12 3301 3217 1613 154 0 0 chrX 1194879 1195125 -175779015 + AluSx SINE Alu 53 298 -14 2229 119 3 0 chrX 1195534 1195845 -175778295 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 1195958 1195981 -175778159 + AT_rich Low_complexity Low_complexity 1 23 0 2249 103 0 0 chrX 1196403 1196695 -175777445 + AluSx SINE Alu 1 292 -20 2338 86 10 0 chrX 1196695 1196998 -175777142 + AluSq SINE Alu 1 306 -7 2108 112 7 0 chrX 1197007 1197302 -175776838 + AluSg SINE Alu 1 297 -13 261 288 119 8 chrX 1197334 1197452 -175776688 + L2 LINE L2 3171 3301 -12 2132 132 24 0 chrX 1197454 1197750 -175776390 + AluSx SINE Alu 1 303 -9 2419 70 0 3 chrX 1198139 1198441 -175775699 + AluSc SINE Alu 2 302 -7 2065 135 0 0 chrX 1198445 1198754 -175775386 + AluSx SINE Alu 1 309 0 725 194 8 0 chrX 1198890 1199019 -175775121 + FLAM_A SINE Alu 1 130 -3 1871 132 0 31 chrX 1200627 1200914 -175773226 + AluSx SINE Alu 1 278 -34 254 96 0 19 chrX 1200917 1200969 -175773171 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1754 82 16 4 chrX 1201108 1201352 -175772788 + L1PA7 LINE L1 5905 6151 -3 206 189 11 137 chrX 1201449 1201544 -175772596 + MIR SINE MIR 170 252 -10 21 71 0 0 chrX 1201877 1201919 -175772221 + AT_rich Low_complexity Low_complexity 1 42 0 2011 152 7 7 chrX 1202281 1202590 -175771550 + AluSx SINE Alu 3 311 -1 250 305 42 0 chrX 1204060 1204155 -175769985 - L2 LINE L2 -927 2387 2289 203 315 62 88 chrX 1204164 1204236 -175769904 - L2 LINE L2 -1320 1994 1922 1779 178 3 0 chrX 1204236 1204534 -175769606 - AluSx SINE Alu 0 312 14 203 315 62 88 chrX 1204534 1204848 -175769292 - L2 LINE L2 -1392 1922 1618 2157 102 20 0 chrX 1205302 1205607 -175768533 + AluSx SINE Alu 1 311 -1 24 0 0 0 chrX 1205669 1205693 -175768447 + AT_rich Low_complexity Low_complexity 1 24 0 2310 89 0 3 chrX 1205816 1206118 -175768022 + AluY SINE Alu 1 301 -10 2195 132 3 0 chrX 1206323 1206633 -175767507 - AluSx SINE Alu -1 311 1 2049 127 0 0 chrX 1207380 1207699 -175766441 - AluSx SINE Alu 0 319 1 924 161 86 0 chrX 1207868 1208042 -175766098 - MER46A DNA MER2_type 0 236 48 2274 97 0 7 chrX 1208205 1208503 -175765637 - AluSg SINE Alu -14 296 1 2328 89 3 3 chrX 1208776 1209080 -175765060 + AluSg SINE Alu 1 304 -6 307 190 0 0 chrX 1209081 1209139 -175765001 - MER46A DNA MER2_type -178 58 1 286 193 0 0 chrX 1209091 1209148 -175764992 + MER46A DNA MER2_type 97 153 -83 * 27 49 0 0 chrX 1209330 1209371 -175764769 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chrX 1209592 1209616 -175764524 + AT_rich Low_complexity Low_complexity 1 24 0 1946 143 3 16 chrX 1209819 1210133 -175764007 + AluJb SINE Alu 3 312 0 38 0 0 0 chrX 1210328 1210366 -175763774 + AT_rich Low_complexity Low_complexity 1 38 0 1586 99 19 0 chrX 1210366 1210578 -175763562 - AluSg/x SINE Alu -15 295 80 1391 165 0 35 chrX 1210578 1210832 -175763308 + AluJo SINE Alu 67 311 -1 1559 159 10 51 chrX 1210965 1211145 -175762995 - AluJb SINE Alu 0 316 152 2208 106 0 3 chrX 1211145 1211437 -175762703 - AluY SINE Alu -20 291 1 1559 159 10 51 chrX 1211437 1211584 -175762556 - AluJb SINE Alu -164 152 1 884 200 22 0 chrX 1211971 1212156 -175761984 + L1MC4 LINE L1 6815 7003 -1039 * 2307 221 88 56 chrX 1212153 1212265 -175761875 + L1MC3 LINE L1 6188 6295 -1490 1977 127 3 11 chrX 1212265 1212585 -175761555 + AluSx SINE Alu 1 318 0 2307 221 88 56 chrX 1212585 1212874 -175761266 + L1MC3 LINE L1 6295 6573 -1212 195 42 0 0 chrX 1212874 1212898 -175761242 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 2307 221 88 56 chrX 1212898 1213265 -175760875 + L1MC3 LINE L1 6573 6992 -793 1814 150 56 0 chrX 1213265 1213552 -175760588 - AluSx SINE Alu -9 303 1 2307 221 88 56 chrX 1213552 1213666 -175760474 + L1MC3 LINE L1 6992 7101 -684 374 241 0 11 chrX 1213666 1213753 -175760387 + MLT1F1 LTR MaLR 40 125 -442 651 206 25 25 chrX 1213754 1213914 -175760226 + L1MD3 LINE L1 7404 7563 -432 416 154 86 26 chrX 1214063 1214180 -175759960 + L1MC4 LINE L1 7918 8041 -1 1464 208 54 17 chrX 1214211 1214509 -175759631 - AluJo SINE Alu -3 309 1 1752 173 0 46 chrX 1214575 1214898 -175759242 - AluJo SINE Alu -4 308 1 949 158 99 0 chrX 1214900 1215122 -175759018 + L1MCa LINE L1 2158 2401 -4025 332 357 66 63 chrX 1215529 1215665 -175758475 - L2 LINE L2 -18 3254 3120 2091 127 0 31 chrX 1215665 1215987 -175758153 + AluSx SINE Alu 1 312 0 332 357 66 63 chrX 1215987 1216197 -175757943 - L2 LINE L2 -152 3120 2907 510 152 181 0 chrX 1216728 1216833 -175757307 + FLAM_C SINE Alu 3 126 -17 44 0 0 0 chrX 1216833 1216877 -175757263 + AT_rich Low_complexity Low_complexity 1 44 0 2314 98 0 3 chrX 1217820 1218125 -175756015 + AluSg SINE Alu 1 304 -6 249 56 0 0 chrX 1218299 1218335 -175755805 - AluJo SINE Alu -9 291 256 240 268 78 20 chrX 1218533 1218686 -175755454 + L1MC5 LINE L1 7503 7664 -297 1528 204 4 0 chrX 1218742 1219002 -175755138 - AluJo SINE Alu -49 263 3 21 0 0 0 chrX 1219203 1219224 -175754916 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chrX 1220270 1220312 -175753828 + AT_rich Low_complexity Low_complexity 1 42 0 294 241 113 0 chrX 1220404 1220545 -175753595 + L1ME LINE L1 5629 5785 -336 1016 174 23 46 chrX 1220559 1220777 -175753363 - AluJo SINE Alu -5 307 95 2337 97 3 0 chrX 1220808 1221107 -175753033 + AluSp SINE Alu 1 300 -13 2222 129 0 3 chrX 1221107 1221418 -175752722 + AluSx SINE Alu 1 310 -2 1927 142 7 0 chrX 1221427 1221752 -175752388 + AluSx SINE Alu 1 327 0 1611 201 4 4 chrX 1222145 1222424 -175751716 + AluJb SINE Alu 13 291 -21 297 0 0 0 chrX 1222425 1222439 -175751701 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 0 0 0 chrX 1222439 1222472 -175751668 + (TG)n Simple_repeat Simple_repeat 2 34 0 2270 106 3 0 chrX 1222658 1222961 -175751179 + AluSp SINE Alu 1 304 -9 234 233 67 58 chrX 1223231 1223351 -175750789 + L1ME LINE L1 5705 5825 -296 752 149 0 37 chrX 1223379 1223513 -175750627 - FLAM_C SINE Alu -1 142 14 252 0 0 0 chrX 1223527 1223555 -175750585 + (TA)n Simple_repeat Simple_repeat 2 29 0 2315 84 10 3 chrX 1223555 1223854 -175750286 - AluSq SINE Alu -9 304 4 1345 233 89 83 chrX 1224019 1224949 -175749191 + L1ME3 LINE L1 4337 5275 -871 2215 122 0 0 chrX 1224949 1225244 -175748896 + AluSx SINE Alu 1 295 -17 1345 233 89 83 chrX 1225244 1225285 -175748855 + L1ME3 LINE L1 5275 5314 -832 558 266 125 41 chrX 1225282 1225451 -175748689 + L1ME3 LINE L1 5677 5830 -332 * 2407 93 0 3 chrX 1225451 1225762 -175748378 + AluSg SINE Alu 1 310 0 558 266 125 41 chrX 1225762 1226032 -175748108 + L1ME3 LINE L1 5830 6153 -9 2086 124 34 47 chrX 1226431 1226811 -175747329 - THE1C LTR MaLR 0 375 1 23 33 0 0 chrX 1227406 1227436 -175746704 + AT_rich Low_complexity Low_complexity 1 30 0 2321 92 0 7 chrX 1227669 1227975 -175746165 + AluY SINE Alu 1 304 -7 808 129 0 64 chrX 1228182 1228322 -175745818 - FLAM_C SINE Alu 0 133 3 271 313 133 0 chrX 1228963 1229113 -175745027 - L2 LINE L2 -207 3065 2896 2459 84 0 0 chrX 1229254 1229564 -175744576 + AluY SINE Alu 1 310 -1 307 244 33 22 chrX 1229572 1229662 -175744478 - L1MC4 LINE L1 -1340 6702 6612 905 79 28 11 chrX 1229681 1229858 -175744282 + (TA)n Simple_repeat Simple_repeat 1 180 0 838 176 59 26 chrX 1229956 1230109 -175744031 + FAM SINE Alu 1 158 -17 1250 179 122 4 chrX 1230266 1230383 -175743757 + AluJo SINE Alu 1 103 -209 222 62 0 0 chrX 1230383 1230415 -175743725 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 1250 179 122 4 chrX 1230415 1230559 -175743581 + AluJo SINE Alu 103 293 -19 389 289 132 0 chrX 1230854 1231013 -175743127 - MIR SINE MIR -12 250 71 288 77 0 0 chrX 1231780 1231819 -175742321 + (TA)n Simple_repeat Simple_repeat 1 39 0 2384 67 3 7 chrX 1231819 1232118 -175742022 - AluY SINE Alu -13 298 1 2104 110 3 7 chrX 1232725 1232901 -175741239 - AluSc SINE Alu -11 298 122 216 0 0 0 chrX 1232901 1232925 -175741215 + (TG)n Simple_repeat Simple_repeat 2 25 0 2104 110 3 7 chrX 1232925 1233047 -175741093 - AluSc SINE Alu -187 122 1 2421 74 0 6 chrX 1233432 1233744 -175740396 + AluY SINE Alu 1 310 -1 31 26 0 0 chrX 1233850 1233888 -175740252 + AT_rich Low_complexity Low_complexity 1 38 0 965 147 0 0 chrX 1234605 1234748 -175739392 + U4 snRNA snRNA 2 144 -1 31 0 0 0 chrX 1234751 1234782 -175739358 + AT_rich Low_complexity Low_complexity 1 31 0 1297 167 10 68 chrX 1234792 1235103 -175739037 + AluJo SINE Alu 11 303 -9 2183 132 0 3 chrX 1235962 1236273 -175737867 - AluSx SINE Alu -2 310 1 2299 94 3 0 chrX 1236458 1236755 -175737385 + AluSp SINE Alu 5 302 -11 219 362 106 0 chrX 1236769 1236863 -175737277 + L2 LINE L2 3154 3257 -15 2487 44 0 10 chrX 1237466 1237762 -175736378 - AluY SINE Alu -17 294 2 1422 128 128 12 chrX 1238193 1238442 -175735698 - AluSg1 SINE Alu -11 298 21 2228 79 4 0 chrX 1238685 1238964 -175735176 + AluSg SINE Alu 1 280 -30 2187 107 7 0 chrX 1242420 1242711 -175731429 - AluSq SINE Alu -20 293 1 1174 223 20 46 chrX 1243547 1243942 -175730198 + L1ME1 LINE L1 5738 6122 -44 457 62 0 0 chrX 1244195 1244260 -175729880 + L1PB3 LINE L1 6082 6146 -8 187 75 0 50 chrX 1244375 1244415 -175729725 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 276 355 64 35 chrX 1244418 1244762 -175729378 - L2 LINE L2 -739 2575 2222 2324 97 0 28 chrX 1245470 1245789 -175728351 - AluY SINE Alu -1 310 1 2228 79 4 0 chrX 1246127 1246406 -175727734 + AluSg SINE Alu 1 280 -30 2247 110 3 0 chrX 1249862 1250154 -175723986 - AluSp SINE Alu -20 293 1 499 192 111 0 chrX 1250221 1250320 -175723820 - FLAM_A SINE Alu -8 134 25 1911 87 45 42 chrX 1250717 1251005 -175723135 + AluY SINE Alu 1 289 -22 341 23 0 0 chrX 1252508 1252551 -175721589 - U3 snRNA snRNA -174 43 1 353 290 55 19 chrX 1253422 1253539 -175720601 + MER5A DNA MER1_type 14 130 -48 468 233 92 137 chrX 1254469 1254783 -175719357 + L2 LINE L2 2966 3265 -48 1423 123 22 148 chrX 1254790 1254916 -175719224 + AluYb8 SINE Alu 12 152 -161 2417 40 0 33 chrX 1254916 1255218 -175718922 + AluY SINE Alu 1 292 -19 1423 123 22 148 chrX 1255218 1255433 -175718707 + AluYb8 SINE Alu 152 313 0 23 0 0 0 chrX 1256316 1256339 -175717801 + AT_rich Low_complexity Low_complexity 1 23 0 849 158 0 0 chrX 1257024 1257151 -175716989 - FLAM_C SINE Alu -5 128 2 23 33 0 0 chrX 1257162 1257192 -175716948 + AT_rich Low_complexity Low_complexity 1 30 0 1094 109 0 0 chrX 1261829 1261985 -175712155 - AluSq SINE Alu -12 301 146 262 98 0 0 chrX 1261985 1262026 -175712114 - Alu SINE Alu -261 41 1 2055 129 3 0 chrX 1263951 1264246 -175709894 + AluSx SINE Alu 1 296 -16 1036 209 5 0 chrX 1264271 1264462 -175709678 + AluJo SINE Alu 6 197 -115 183 80 0 0 chrX 1264464 1264489 -175709651 + (A)n Simple_repeat Simple_repeat 1 25 0 203 211 211 0 chrX 1265664 1265716 -175708424 - L2 LINE L2 0 3313 3251 2392 88 3 0 chrX 1265878 1266184 -175707956 + AluSx SINE Alu 1 307 -5 2189 95 0 7 chrX 1266355 1266649 -175707491 - AluSq SINE Alu -21 292 1 540 180 72 0 chrX 1267464 1267575 -175706565 - MLT2B2 LTR ERVL -396 119 1 2195 101 3 3 chrX 1267583 1267881 -175706259 - AluSg SINE Alu -12 298 1 27 0 0 26 chrX 1268031 1268046 -175706094 + AT_rich Low_complexity Low_complexity 1 15 -22 1309 133 58 0 chrX 1268046 1268286 -175705854 - L1MA4 LINE L1 -11 6289 6036 27 0 0 26 chrX 1268286 1268308 -175705832 + AT_rich Low_complexity Low_complexity 15 37 0 2271 53 60 3 chrX 1268341 1268624 -175705516 - AluY SINE Alu -12 299 1 352 128 13 26 chrX 1268628 1268706 -175705434 - L1MA4 LINE L1 -249 6051 5975 278 130 0 0 chrX 1268706 1268752 -175705388 + L1 LINE L1 5193 5238 -908 613 139 11 2 chrX 1268839 1268963 -175705177 - L1MA4A LINE L1 -339 5966 5842 18888 87 2 10 chrX 1269126 1269737 -175704403 - L1PA7 LINE L1 -68 6086 5472 2075 135 3 0 chrX 1269737 1270034 -175704106 - AluSg1 SINE Alu -11 298 1 18888 87 2 10 chrX 1270034 1272853 -175701287 - L1PA7 LINE L1 -682 5472 2684 2340 86 7 7 chrX 1273009 1273312 -175700828 - AluSc SINE Alu -6 303 1 634 177 32 0 chrX 1273312 1273436 -175700704 - L1MC3 LINE L1 -1081 6704 6577 * 2260 187 11 2 chrX 1273433 1273866 -175700274 - L1MC3 LINE L1 -1098 6687 6251 196 337 30 20 chrX 1275124 1275225 -175698915 - L3 LINE CR1 -211 1366 1265 21 82 0 0 chrX 1275262 1275311 -175698829 + AT_rich Low_complexity Low_complexity 1 49 0 812 293 19 34 chrX 1275743 1276006 -175698134 + MIR SINE MIR 1 259 -3 2397 70 3 20 chrX 1276519 1276821 -175697319 - AluSp SINE Alu -16 297 1 1720 173 3 3 chrX 1277076 1277360 -175696780 + AluJo SINE Alu 13 296 -16 21 36 0 0 chrX 1279461 1279489 -175694651 + AT_rich Low_complexity Low_complexity 1 28 0 389 195 0 0 chrX 1279680 1279762 -175694378 - L1MA9 LINE L1 -22 6290 6209 1202 259 108 75 chrX 1280536 1281333 -175692807 - HAL1 LINE L1 -13 2494 1672 192 77 0 0 chrX 1281355 1281381 -175692759 + (T)n Simple_repeat Simple_repeat 1 26 0 381 311 39 34 chrX 1281409 1281766 -175692374 - HAL1 LINE L1 -1115 1392 1034 679 256 38 0 chrX 1281772 1281932 -175692208 + MLT1F1 LTR MaLR 395 560 -7 1698 185 14 0 chrX 1282325 1282612 -175691528 + AluJb SINE Alu 1 291 -21 29 28 0 0 chrX 1282784 1282820 -175691320 + AT_rich Low_complexity Low_complexity 1 36 0 646 178 0 0 chrX 1282820 1282921 -175691219 - U6 snRNA snRNA -6 101 1 479 303 106 14 chrX 1283116 1283324 -175690816 - MIR SINE MIR -15 247 21 1972 138 21 55 chrX 1283369 1283754 -175690386 + THE1C LTR MaLR 1 372 -3 407 276 33 62 chrX 1284327 1284602 -175689538 + L1ME3A LINE L1 5702 5968 -202 295 268 45 67 chrX 1284858 1285037 -175689103 - HAL1 LINE L1 0 2507 2333 42 20 0 0 chrX 1285037 1285086 -175689054 + AT_rich Low_complexity Low_complexity 1 49 0 727 124 62 9 chrX 1285087 1285200 -175688940 - FLAM_C SINE Alu -14 119 1 1104 267 93 30 chrX 1285200 1285740 -175688400 - HAL1 LINE L1 -160 2347 1774 257 286 118 0 chrX 1285742 1285861 -175688279 - L2 LINE L2 -5 3308 3176 1192 278 34 37 chrX 1286036 1286712 -175687428 - L2 LINE L2 -229 3084 2199 437 208 113 0 chrX 1287252 1287358 -175686782 - HAL1 LINE L1 -2384 123 6 345 333 50 33 chrX 1288143 1288263 -175685877 + L2 LINE L2 3122 3243 -29 378 312 74 72 chrX 1288674 1289065 -175685075 - HAL1 LINE L1 -2 2505 2114 865 263 107 12 chrX 1289195 1289541 -175684599 - L1ME4a LINE L1 -238 5883 5505 2427 87 0 0 chrX 1290017 1290317 -175683823 - AluSg SINE Alu -10 300 1 2202 119 0 7 chrX 1291289 1291599 -175682541 + AluSg SINE Alu 1 308 -2 259 303 0 34 chrX 1292075 1292164 -175681976 + L2 LINE L2 44 129 -3185 * 715 255 242 7 chrX 1292158 1292456 -175681684 + L2 LINE L2 2946 3313 0 746 360 22 0 chrX 1292677 1292988 -175681152 + HAL1 LINE L1 2 319 -2188 418 292 167 51 chrX 1293009 1293299 -175680841 + HAL1 LINE L1 436 772 -1735 1785 292 72 20 chrX 1293299 1293894 -175680246 + MLT2E LTR ERVL 1 626 -2 418 292 167 51 chrX 1293894 1293939 -175680201 + HAL1 LINE L1 772 810 -1697 1555 255 134 21 chrX 1293980 1294795 -175679345 + HAL1 LINE L1 967 1873 -634 568 233 12 6 chrX 1294810 1294982 -175679158 + (CATA)n Simple_repeat Simple_repeat 4 176 0 288 287 271 0 chrX 1295078 1295200 -175678940 + HAL1 LINE L1 621 775 -1732 317 262 19 10 chrX 1295269 1295372 -175678768 - L1MC4 LINE L1 -1328 6714 6611 23 0 0 0 chrX 1295405 1295428 -175678712 + AT_rich Low_complexity Low_complexity 1 23 0 836 314 66 39 chrX 1295892 1295909 -175678231 + HAL1 LINE L1 1468 1483 -1024 2168 112 0 3 chrX 1295909 1296241 -175677899 - AluSq SINE Alu 0 332 2 836 314 66 39 chrX 1296241 1296690 -175677450 + HAL1 LINE L1 1483 1948 -559 326 253 89 55 chrX 1296724 1296926 -175677214 + LTR33A LTR ERVL 3 211 -312 1803 181 13 0 chrX 1296933 1297236 -175676904 - AluJb SINE Alu -5 307 1 233 212 25 59 chrX 1298355 1298473 -175675667 + (TCTCTG)n Simple_repeat Simple_repeat 2 115 0 565 217 8 8 chrX 1300079 1300208 -175673932 + L1M4 LINE L1 5340 5468 -710 664 166 93 20 chrX 1300208 1300359 -175673781 - MLT1D LTR MaLR 0 505 344 * 781 191 42 24 chrX 1300348 1300516 -175673624 - MSTA LTR MaLR -43 385 215 21 0 0 0 chrX 1300605 1300626 -175673514 + AT_rich Low_complexity Low_complexity 1 21 0 2115 125 0 3 chrX 1300664 1300961 -175673179 + AluSg SINE Alu 1 296 -14 21 0 0 0 chrX 1301021 1301042 -175673098 + AT_rich Low_complexity Low_complexity 1 21 0 215 286 0 0 chrX 1302107 1302163 -175671977 - MIR SINE MIR -121 141 86 233 316 35 11 chrX 1302999 1303112 -175671028 - MIR SINE MIR -74 134 15 423 204 18 26 chrX 1304011 1304124 -175670016 + MER31A LTR ERV1 346 457 -28 2391 57 3 7 chrX 1304149 1304446 -175669694 - AluY SINE Alu -15 296 1 300 188 0 0 chrX 1304495 1304559 -175669581 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 357 248 0 0 chrX 1304618 1304731 -175669409 + (TA)n Simple_repeat Simple_repeat 2 114 0 453 259 54 32 chrX 1305113 1305298 -175668842 + MIR SINE MIR 68 256 -6 1867 181 3 3 chrX 1305626 1305935 -175668205 + AluJo SINE Alu 1 309 -3 2216 125 6 3 chrX 1306264 1306575 -175667565 - AluSx SINE Alu 0 312 1 890 125 0 0 chrX 1306626 1306762 -175667378 - L1PA16 LINE L1 -5 6161 6026 692 269 58 66 chrX 1306946 1307311 -175666829 - LTR16A1 LTR ERVL -45 412 51 181 62 0 94 chrX 1307499 1307531 -175666609 - MIR SINE MIR -5 257 229 2684 107 65 2 chrX 1307654 1308067 -175666073 - MLT2A2 LTR ERVL 0 453 15 2337 91 3 7 chrX 1308560 1308868 -175665272 + AluSq SINE Alu 1 307 -6 270 179 0 15 chrX 1308868 1308935 -175665205 - L1ME LINE L1 -2413 3667 3602 1541 188 15 4 chrX 1309003 1309274 -175664866 - AluJo SINE Alu -2 310 37 2207 131 0 0 chrX 1309300 1309597 -175664543 - AluSg SINE Alu -13 297 1 2996 253 63 59 chrX 1309597 1310051 -175664089 - L1ME LINE L1 -2581 3499 3048 2318 85 0 3 chrX 1310051 1310346 -175663794 - AluSg SINE Alu -16 294 1 1802 174 17 3 chrX 1310346 1310640 -175663500 - AluSx SINE Alu -14 298 1 2996 253 63 59 chrX 1310640 1310739 -175663401 - L1ME LINE L1 -3032 3048 2951 562 193 0 90 chrX 1310739 1310884 -175663256 - FLAM_C SINE Alu -1 132 1 2996 253 63 59 chrX 1310884 1310952 -175663188 - L1ME LINE L1 -3129 2951 2885 2149 128 3 0 chrX 1310952 1311248 -175662892 - AluSx SINE Alu -15 297 1 2996 253 63 59 chrX 1311248 1311787 -175662353 - L1ME LINE L1 -3195 2885 2350 646 209 8 8 chrX 1311787 1311916 -175662224 - FLAM_A SINE Alu -4 129 1 2996 253 63 59 chrX 1311916 1312178 -175661962 - L1ME LINE L1 -3730 2350 2091 2062 140 0 0 chrX 1312178 1312470 -175661670 - AluSg SINE Alu -18 292 1 2996 253 63 59 chrX 1312470 1313069 -175661071 - L1ME LINE L1 -3989 2091 1496 2050 136 67 43 chrX 1313069 1313116 -175661024 - MSTA LTR MaLR 0 428 384 1945 137 0 59 chrX 1313116 1313438 -175660702 + AluJb SINE Alu 6 308 -4 2050 136 67 43 chrX 1313438 1313808 -175660332 - MSTA LTR MaLR -44 384 1 2996 253 63 59 chrX 1313808 1314233 -175659907 - L1ME LINE L1 -4584 1496 1074 2458 65 0 0 chrX 1314233 1314527 -175659613 + AluY SINE Alu 1 294 -17 2996 253 63 59 chrX 1314527 1314970 -175659170 - L1ME LINE L1 -5006 1074 566 1040 289 63 47 chrX 1315524 1315578 -175658562 - L1ME LINE L1 -5553 517 465 1726 176 28 0 chrX 1315578 1315868 -175658272 - AluJb SINE Alu -14 298 1 1040 289 63 47 chrX 1315868 1316322 -175657818 - L1ME LINE L1 -5605 465 1 302 275 44 11 chrX 1316722 1316813 -175657327 - MIR SINE MIR -61 201 108 22 56 0 0 chrX 1317128 1317164 -175656976 + AT_rich Low_complexity Low_complexity 1 36 0 730 244 36 50 chrX 1317239 1317292 -175656848 + MER58A DNA MER1_type 6 58 -2362 495 87 0 0 chrX 1317292 1317361 -175656779 + (CTATT)n Simple_repeat Simple_repeat 3 71 0 730 244 36 50 chrX 1317361 1317397 -175656743 + MER58A DNA MER1_type 58 93 -2327 2480 50 3 0 chrX 1317397 1317699 -175656441 - AluY SINE Alu -8 303 1 730 244 36 50 chrX 1317699 1317829 -175656311 + MER58A DNA MER1_type 93 223 -1 2431 93 0 3 chrX 1318304 1318614 -175655526 - AluSx SINE Alu -3 309 1 1655 207 0 14 chrX 1318623 1318986 -175655154 + L1MA7 LINE L1 4727 5084 -1062 301 68 0 68 chrX 1318990 1319049 -175655091 + (TG)n Simple_repeat Simple_repeat 1 55 0 928 197 5 5 chrX 1319054 1319247 -175654893 - MER58 DNA MER1_type -2217 203 11 4091 149 22 61 chrX 1319247 1319306 -175654834 + L1MA7 LINE L1 5080 5140 -1151 1801 189 3 3 chrX 1319306 1319612 -175654528 + AluJo SINE Alu 1 306 -6 4091 149 22 61 chrX 1319612 1320158 -175653982 + L1MA7 LINE L1 5140 5626 -665 695 110 0 0 chrX 1320158 1320258 -175653882 + HY3 scRNA scRNA 1 100 -1 4091 149 22 61 chrX 1320258 1320782 -175653358 + L1MA7 LINE L1 5626 6169 -122 894 181 7 0 chrX 1320782 1320926 -175653214 + AluJb SINE Alu 134 278 -34 648 155 35 21 chrX 1320926 1320942 -175653198 + L1MA5 LINE L1 6155 6169 -131 375 23 0 0 chrX 1320942 1320986 -175653154 + (TA)n Simple_repeat Simple_repeat 2 45 0 648 155 35 21 chrX 1320986 1321111 -175653029 + L1MA5 LINE L1 6169 6298 -2 22 56 0 0 chrX 1321111 1321147 -175652993 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 1321349 1321377 -175652763 + AT_rich Low_complexity Low_complexity 1 28 0 30 59 0 0 chrX 1321775 1321826 -175652314 + AT_rich Low_complexity Low_complexity 1 51 0 3770 169 9 28 chrX 1321938 1322089 -175652051 - L1M1 LINE L1 -677 5628 5476 3440 107 62 65 chrX 1322089 1322754 -175651386 + MER4A LTR ERV1 2 664 0 3770 169 9 28 chrX 1322754 1322876 -175651264 - L1M1 LINE L1 -829 5476 5353 1852 165 3 3 chrX 1322876 1323173 -175650967 - AluJb SINE Alu -15 297 1 3770 169 9 28 chrX 1323173 1324069 -175650071 - L1M1 LINE L1 -952 5353 4474 1190 201 5 18 chrX 1324873 1325092 -175649048 + MER20 DNA MER1_type 2 217 -2 1615 206 7 0 chrX 1325097 1325403 -175648737 + AluJo SINE Alu 1 308 -4 2381 101 0 0 chrX 1325804 1326111 -175648029 - AluSq SINE Alu -6 307 1 345 327 74 31 chrX 1326300 1326362 -175647778 + MIR SINE MIR 71 129 -133 459 0 0 0 chrX 1326362 1326413 -175647727 + (TA)n Simple_repeat Simple_repeat 2 52 0 345 327 74 31 chrX 1326413 1326512 -175647628 + MIR SINE MIR 129 239 -23 2413 97 3 0 chrX 1327148 1327456 -175646684 + AluSx SINE Alu 1 309 -3 639 259 47 19 chrX 1327578 1327790 -175646350 + HsTC2 DNA Tc2 1521 1738 -160 1050 191 57 0 chrX 1327819 1328013 -175646127 - AluJo SINE Alu -16 296 92 22 0 0 0 chrX 1328492 1328514 -175645626 + AT_rich Low_complexity Low_complexity 1 22 0 1738 201 61 27 chrX 1329420 1329862 -175644278 - LTR2B LTR ERV1 0 490 34 2665 104 60 29 chrX 1330274 1330821 -175643319 + MER4A LTR ERV1 1 663 -1 340 232 0 32 chrX 1330825 1330920 -175643220 + MLT1K LTR MaLR 346 437 -151 10372 160 25 36 chrX 1331271 1333529 -175640611 - L1P LINE L1 -3314 2832 600 5458 163 59 31 chrX 1333531 1334325 -175639815 - L1 LINE L1 -1653 4493 3723 423 0 0 0 chrX 1334325 1334372 -175639768 + (TG)n Simple_repeat Simple_repeat 2 48 0 5458 163 59 31 chrX 1334372 1334831 -175639309 - L1 LINE L1 -2423 3723 3199 1484 196 0 29 chrX 1334831 1335137 -175639003 - AluJb SINE Alu -4 308 12 5458 163 59 31 chrX 1335137 1335203 -175638937 - L1 LINE L1 -2947 3199 3136 941 204 12 0 chrX 1335204 1335376 -175638764 - AluJb SINE Alu -10 302 129 2348 101 0 25 chrX 1335487 1335805 -175638335 - AluY SINE Alu -1 310 1 656 311 144 3 chrX 1335924 1336223 -175637917 + MLT1J LTR MaLR 1 341 -170 2403 88 0 3 chrX 1336491 1336799 -175637341 + AluSx SINE Alu 1 307 -5 2210 120 0 0 chrX 1337099 1337400 -175636740 + AluSg SINE Alu 1 301 -9 2671 222 69 25 chrX 1337728 1338499 -175635641 - MER45B DNA AcHobo 0 1040 236 525 244 15 7 chrX 1338534 1338669 -175635471 - MER45B DNA AcHobo -900 140 5 570 279 113 33 chrX 1338673 1339215 -175634925 + L1MC5 LINE L1 7330 7914 -47 25 0 0 0 chrX 1339247 1339272 -175634868 + AT_rich Low_complexity Low_complexity 1 25 0 193 263 26 26 chrX 1340514 1340590 -175633550 - MIR SINE MIR 0 262 187 730 287 20 0 chrX 1340848 1341050 -175633090 - LTR16A LTR ERVL -12 438 233 331 290 81 0 chrX 1341291 1341477 -175632663 - L1MEc LINE L1 -3940 2456 2256 25 31 0 0 chrX 1341574 1341606 -175632534 + AT_rich Low_complexity Low_complexity 1 32 0 778 218 0 0 chrX 1341702 1341835 -175632305 + FLAM_A SINE Alu 1 133 0 449 259 57 69 chrX 1342110 1342372 -175631768 + MER20B DNA MER1_type 23 281 -502 782 222 96 9 chrX 1342472 1342702 -175631438 + MER20B DNA MER1_type 273 522 -261 24 0 0 0 chrX 1343968 1343992 -175630148 + AT_rich Low_complexity Low_complexity 1 24 0 2321 97 3 0 chrX 1344668 1344968 -175629172 - AluSx SINE Alu -6 306 6 248 383 58 8 chrX 1344970 1345090 -175629050 + L2 LINE L2 3147 3272 0 25 31 0 0 chrX 1345171 1345203 -175628937 + AT_rich Low_complexity Low_complexity 1 32 0 242 258 32 0 chrX 1345246 1345308 -175628832 - MIR SINE MIR -79 183 120 276 329 0 0 chrX 1345382 1345455 -175628685 - MIR SINE MIR -102 106 34 2340 38 41 10 chrX 1346326 1346618 -175627522 - AluY SINE Alu -10 301 1 200 59 29 0 chrX 1346984 1347018 -175627122 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 384 311 12 42 chrX 1347037 1347204 -175626936 - MER5A DNA MER1_type -11 178 17 2581 74 0 0 chrX 1347240 1347551 -175626589 + AluY SINE Alu 1 311 0 2392 101 0 0 chrX 1347822 1348129 -175626011 + AluSg SINE Alu 1 307 -3 714 230 35 71 chrX 1348604 1348734 -175625406 - MER58A DNA MER1_type -2197 223 90 2455 47 3 0 chrX 1348734 1349031 -175625109 + AluY SINE Alu 1 298 -13 714 230 35 71 chrX 1349031 1349072 -175625068 - MER58A DNA MER1_type -2330 90 49 495 87 0 0 chrX 1349072 1349141 -175624999 + (AATAG)n Simple_repeat Simple_repeat 3 71 0 714 230 35 71 chrX 1349141 1349194 -175624946 - MER58A DNA MER1_type -2371 49 6 22 56 0 0 chrX 1349269 1349305 -175624835 + AT_rich Low_complexity Low_complexity 1 36 0 302 275 44 11 chrX 1349620 1349711 -175624429 + MIR SINE MIR 108 201 -61 943 307 71 18 chrX 1350111 1350560 -175623580 + L1ME LINE L1 1 473 -5597 1084 171 11 0 chrX 1350565 1350741 -175623399 + AluJb SINE Alu 1 178 -134 1404 165 5 22 chrX 1552325 1552549 -175421591 + AluJo SINE Alu 1 220 -92 724 205 118 46 chrX 1552549 1552744 -175421396 + AluJo SINE Alu 86 294 -18 314 121 0 17 chrX 1552744 1552802 -175421338 + (GGA)n Simple_repeat Simple_repeat 1 57 0 472 313 166 22 chrX 1553256 1553611 -175420529 - L2 LINE L2 -2 3311 2906 1598 182 32 50 chrX 1553805 1554206 -175419934 + L1MB5 LINE L1 5667 6060 -114 256 61 0 0 chrX 1554210 1554243 -175419897 + U2 snRNA snRNA 1 33 -155 239 293 52 9 chrX 1554243 1554359 -175419781 + L1MB7 LINE L1 6049 6169 -15 188 257 15 125 chrX 1554952 1555088 -175419052 + MIR3 SINE MIR 37 157 -51 213 213 0 0 chrX 1555171 1555218 -175418922 + (CA)n Simple_repeat Simple_repeat 2 48 0 778 169 4 146 chrX 1555225 1555313 -175418827 - MER82 DNA MER2_type -218 435 336 1534 173 0 104 chrX 1555313 1555648 -175418492 + AluJo SINE Alu 1 300 -2 778 169 4 146 chrX 1555648 1555820 -175418320 - MER82 DNA MER2_type -317 336 212 2295 96 8 22 chrX 1555871 1556236 -175417904 + L1PB1 LINE L1 5712 6071 -80 692 179 19 13 chrX 1556262 1556418 -175417722 + L1MB3 LINE L1 6020 6176 -7 2591 71 0 0 chrX 1556725 1557036 -175417104 - AluY SINE Alu 0 311 1 1974 171 14 8 chrX 1557737 1558100 -175416040 - MLT1A1 LTR MaLR 0 365 1 2060 129 20 0 chrX 1558125 1558419 -175415721 + AluSx SINE Alu 1 300 -12 2237 97 0 13 chrX 1558419 1558717 -175415423 + AluSc SINE Alu 1 294 -15 2782 238 14 3 chrX 1559366 1559988 -175414152 - MER82 DNA MER2_type -1 652 24 602 271 95 70 chrX 1560458 1560511 -175413629 - MLT1D LTR MaLR 0 505 455 2467 138 19 0 chrX 1560511 1560570 -175413570 + L1PB1 LINE L1 5731 5787 -364 270 0 0 0 chrX 1560570 1560600 -175413540 + (CA)n Simple_repeat Simple_repeat 2 31 0 2467 138 19 0 chrX 1560600 1560953 -175413187 + L1PB1 LINE L1 5787 6151 0 602 271 95 70 chrX 1560953 1561330 -175412810 - MLT1D LTR MaLR -50 455 64 1364 181 55 43 chrX 1561336 1561684 -175412456 - MLT1A2 LTR MaLR 0 374 23 2119 125 36 22 chrX 1561689 1562048 -175412092 - THE1B LTR MaLR 0 364 1 1149 234 64 39 chrX 1563767 1564202 -175409938 + MLT1C LTR MaLR 22 467 0 1795 184 56 29 chrX 1565449 1565980 -175408160 + MLT2A2 LTR ERVL 1 554 0 255 103 0 0 chrX 1566443 1566482 -175407658 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1916 107 70 0 chrX 1567042 1567312 -175406828 - AluSx SINE Alu -21 291 3 688 228 82 30 chrX 1567418 1567531 -175406609 - L1MB7 LINE L1 -249 5935 5829 2369 123 76 27 chrX 1567531 1567939 -175406201 + MSTA LTR MaLR 1 428 0 688 228 82 30 chrX 1567939 1568057 -175406083 - L1MB7 LINE L1 -355 5829 5692 356 194 120 0 chrX 1568051 1568159 -175405981 + L1MB4 LINE L1 6035 6155 -25 * 2250 102 0 0 chrX 1568241 1568534 -175405606 + AluSx SINE Alu 7 299 -13 455 212 7 0 chrX 1568668 1568814 -175405326 + CT-rich Low_complexity Low_complexity 2 148 0 647 196 0 6 chrX 1568909 1569088 -175405052 + CT-rich Low_complexity Low_complexity 2 179 0 21 36 0 0 chrX 1569385 1569413 -175404727 + AT_rich Low_complexity Low_complexity 1 28 0 298 263 0 13 chrX 1570299 1570375 -175403765 + (CATA)n Simple_repeat Simple_repeat 4 78 0 385 247 6 22 chrX 1570375 1570557 -175403583 + (TA)n Simple_repeat Simple_repeat 1 179 0 196 200 10 40 chrX 1570628 1570728 -175403412 + (TA)n Simple_repeat Simple_repeat 1 97 0 323 211 0 84 chrX 1570739 1570834 -175403306 + L1MC4 LINE L1 6615 6701 -1341 454 220 14 24 chrX 1570878 1571179 -175402961 + (CATATA)n Simple_repeat Simple_repeat 1 297 0 291 140 0 0 chrX 1571281 1571331 -175402809 + (TATG)n Simple_repeat Simple_repeat 4 53 0 643 207 93 5 chrX 1572795 1572988 -175401152 - MER20 DNA MER1_type -9 210 1 428 35 17 0 chrX 1572992 1573050 -175401090 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 2099 128 30 41 chrX 1573052 1573420 -175400720 + THE1B LTR MaLR 1 364 0 473 161 39 13 chrX 1573420 1573575 -175400565 + (TAGA)n Simple_repeat Simple_repeat 3 161 0 811 198 51 42 chrX 1573609 1573826 -175400314 - MER20 DNA MER1_type 0 219 1 2024 150 0 6 chrX 1573994 1574308 -175399832 + AluSx SINE Alu 1 312 0 241 148 49 0 chrX 1575265 1575326 -175398814 + (CATA)n Simple_repeat Simple_repeat 4 67 0 1951 131 166 66 chrX 1577043 1577454 -175396686 + LTR47A LTR ERVL 1 452 0 240 314 98 49 chrX 1578782 1579046 -175395094 + L2 LINE L2 2364 2640 -674 408 191 0 0 chrX 1579296 1579385 -175394755 + (CAT)n Simple_repeat Simple_repeat 3 91 0 24 0 0 0 chrX 1579875 1579899 -175394241 + AT_rich Low_complexity Low_complexity 1 24 0 464 269 14 28 chrX 1580499 1580640 -175393500 - MIR SINE MIR -56 206 68 494 215 20 108 chrX 1580925 1581120 -175393020 - MER5B DNA MER1_type 0 178 1 253 228 33 11 chrX 1581529 1581621 -175392519 + (TA)n Simple_repeat Simple_repeat 2 95 0 284 217 14 0 chrX 1582331 1582400 -175391740 + MLT1J LTR MaLR 100 169 -342 663 209 11 6 chrX 1583916 1584093 -175390047 + GA-rich Low_complexity Low_complexity 3 180 0 28 91 0 0 chrX 1584378 1584455 -175389685 + AT_rich Low_complexity Low_complexity 1 77 0 484 262 17 17 chrX 1584735 1584907 -175389233 - L1ME LINE L1 -474 5647 5476 317 184 0 13 chrX 1584951 1585027 -175389113 + CT-rich Low_complexity Low_complexity 2 76 0 305 250 15 0 chrX 1585074 1585142 -175388998 - MER5B DNA MER1_type -109 69 1 337 202 0 21 chrX 1585389 1585483 -175388657 + CT-rich Low_complexity Low_complexity 1 92 0 1429 130 39 4 chrX 1585574 1585828 -175388312 - L1MA5A LINE L1 -6 6291 6029 1740 166 10 20 chrX 1586153 1586441 -175387699 + AluJo SINE Alu 1 287 -25 996 133 0 0 chrX 1586441 1586621 -175387519 + (TA)n Simple_repeat Simple_repeat 1 180 0 1706 105 201 10 chrX 1586719 1587032 -175387108 - THE1C LTR MaLR 0 375 3 340 172 0 0 chrX 1587907 1587965 -175386175 - MER63 DNA MER1_type -315 747 690 1363 91 0 0 chrX 1588661 1588859 -175385281 - L1PA14 LINE L1 -361 5800 5603 2342 83 0 93 chrX 1588859 1589255 -175384885 + L1PA14 LINE L1 5800 6159 -2 1744 184 7 3 chrX 1590061 1590366 -175383774 - AluJo SINE Alu -6 306 1 21 36 0 0 chrX 1592336 1592364 -175381776 + AT_rich Low_complexity Low_complexity 1 28 0 2172 140 0 6 chrX 1592441 1592755 -175381385 + AluSx SINE Alu 1 312 0 4949 129 19 8 chrX 1592755 1593589 -175380551 + L1PA15 LINE L1 5321 6163 -2 23 0 0 0 chrX 1593590 1593613 -175380527 + AT_rich Low_complexity Low_complexity 1 23 0 201 270 95 0 chrX 1593900 1593963 -175380177 - MIR SINE MIR -92 170 102 1026 196 117 56 chrX 1595021 1595363 -175378777 - MLT1A1 LTR MaLR -2 363 1 485 154 23 17 chrX 1595422 1595597 -175378543 + (TA)n Simple_repeat Simple_repeat 1 176 0 336 153 0 0 chrX 1595714 1595773 -175378367 - L1MC1 LINE L1 -484 5849 5791 637 193 8 0 chrX 1595780 1595899 -175378241 + L1MC1 LINE L1 6214 6333 0 3403 146 50 2 chrX 1597272 1597847 -175376293 + LTR26 LTR ERV1 1 603 0 638 164 103 0 chrX 1597997 1598113 -175376027 + MER5A DNA MER1_type 1 128 -61 513 106 12 12 chrX 1598115 1598200 -175375940 + THE1B LTR MaLR 280 364 0 3851 103 0 12 chrX 1599191 1599752 -175374388 - MER41A LTR ERV1 0 554 1 1473 150 33 57 chrX 1599752 1600085 -175374055 + L1MC1 LINE L1 6009 6333 0 266 225 38 0 chrX 1600096 1600176 -175373964 + L1M4 LINE L1 5815 5897 -287 875 124 58 0 chrX 1600177 1600314 -175373826 - LTR12 LTR ERV1 -234 480 336 472 101 130 0 chrX 1600314 1600383 -175373757 + AluJb SINE Alu 209 286 -26 1819 170 3 13 chrX 1600652 1600958 -175373182 - AluJo SINE Alu -9 303 1 33 0 0 0 chrX 1601740 1601773 -175372367 + AT_rich Low_complexity Low_complexity 1 33 0 1280 173 18 162 chrX 1601778 1602228 -175371912 - L1PA15 LINE L1 0 6165 5781 265 127 1 52 chrX 1602250 1602308 -175371832 + L1P2 LINE L1 5774 5828 -327 318 267 0 22 chrX 1602342 1602432 -175371708 - L1MC4 LINE L1 -1339 6703 6616 211 257 14 14 chrX 1602433 1602472 -175371668 + (TA)n Simple_repeat Simple_repeat 1 42 -32 571 113 0 0 chrX 1602472 1602552 -175371588 + MADE1 DNA Mariner 1 80 0 211 257 14 14 chrX 1602552 1602586 -175371554 + (TA)n Simple_repeat Simple_repeat 41 74 0 932 151 0 0 chrX 1602587 1602733 -175371407 - L1PA15 LINE L1 -368 5788 5643 606 262 12 0 chrX 1603196 1603368 -175370772 - MER96B DNA MER1_type? -243 174 1 180 176 0 0 chrX 1603452 1603486 -175370654 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1715 195 7 0 chrX 1603525 1603823 -175370317 - AluJo SINE Alu -12 300 1 831 187 0 0 chrX 1603837 1603971 -175370169 - AluJo SINE Alu -178 134 1 227 176 0 0 chrX 1603991 1604025 -175370115 + Tigger5 DNA MER2_type 2273 2306 -17 233 224 0 35 chrX 1604049 1604107 -175370033 + Tigger5 DNA MER2_type 1 56 -2267 * 321 206 14 14 chrX 1604075 1604148 -175369992 + Tigger5 DNA MER2_type 2251 2323 0 368 162 38 0 chrX 1604148 1604253 -175369887 + (TA)n Simple_repeat Simple_repeat 1 109 0 27 29 0 0 chrX 1604286 1604320 -175369820 + AT_rich Low_complexity Low_complexity 1 34 0 191 35 0 35 chrX 1604368 1604397 -175369743 + (TA)n Simple_repeat Simple_repeat 1 28 0 370 288 58 14 chrX 1604668 1604807 -175369333 + MER77 LTR ERV1 55 199 -406 1104 234 96 47 chrX 1604855 1605261 -175368879 + MER77 LTR ERV1 173 598 -7 375 105 0 0 chrX 1605453 1605510 -175368630 + (GA)n Simple_repeat Simple_repeat 2 58 0 1162 243 80 39 chrX 1607410 1607850 -175366290 - MLT1C LTR MaLR -8 459 2 552 219 73 35 chrX 1607861 1608141 -175365999 - MLT1D LTR MaLR -144 361 14 713 232 81 32 chrX 1608154 1608451 -175365689 - MLT1C LTR MaLR -122 345 24 1162 182 5 5 chrX 1608713 1608922 -175365218 - AluJo SINE Alu -4 308 100 1485 171 25 18 chrX 1608922 1609196 -175364944 + AluJo SINE Alu 24 299 -13 2098 119 36 7 chrX 1609416 1609719 -175364421 - AluSx SINE Alu 0 312 1 2097 145 0 0 chrX 1610522 1610832 -175363308 - AluSx SINE Alu -2 310 1 2417 66 3 7 chrX 1611129 1611432 -175362708 + AluY SINE Alu 1 302 -9 2387 139 58 0 chrX 1612431 1612775 -175361365 + THE1B LTR MaLR 1 364 0 1840 163 0 0 chrX 1613314 1613624 -175360516 - AluJb SINE Alu 0 310 1 1088 124 10 161 chrX 1614029 1614247 -175359893 - Tigger4(Zombi) DNA MER2_type -5 2726 2561 1454 204 25 0 chrX 1614247 1614527 -175359613 - AluJo SINE Alu -25 287 1 1088 124 10 161 chrX 1614527 1614599 -175359541 - Tigger4(Zombi) DNA MER2_type -170 2561 2480 1957 146 0 17 chrX 1614600 1614902 -175359238 + AluJb SINE Alu 1 297 -15 418 244 0 0 chrX 1614979 1615061 -175359079 - Tigger4(Zombi) DNA MER2_type -2649 82 1 4205 141 19 16 chrX 1615126 1615635 -175358505 + MER41B LTR ERV1 1 514 -121 2362 100 7 0 chrX 1615635 1615945 -175358195 - AluSx SINE Alu 0 312 1 4205 141 19 16 chrX 1615945 1616068 -175358072 + MER41B LTR ERV1 514 635 0 3587 111 61 23 chrX 1616626 1617196 -175356944 - MER4B LTR ERV1 -9 601 10 2496 200 28 48 chrX 1618124 1618689 -175355451 - MLT2B3 LTR ERVL 0 554 1 238 207 0 52 chrX 1618689 1618747 -175355393 + MLT1A1 LTR MaLR 308 362 -3 532 165 0 0 chrX 1618888 1618979 -175355161 + L1PB4 LINE L1 6061 6151 -5 889 223 5 11 chrX 1619372 1619560 -175354580 - MLT1A1 LTR MaLR -17 348 162 515 155 10 0 chrX 1619562 1619665 -175354475 + GA-rich Low_complexity Low_complexity 2 105 0 22 0 0 0 chrX 1620052 1620074 -175354066 + AT_rich Low_complexity Low_complexity 1 22 0 259 77 0 0 chrX 1621086 1621117 -175353023 - MADE1 DNA Mariner 0 80 47 2064 139 0 0 chrX 1621117 1621419 -175352721 + AluSx SINE Alu 1 302 -10 931 211 70 26 chrX 1621421 1621706 -175352434 + MSTD LTR MaLR 48 389 -7 1762 173 0 19 chrX 1622050 1622357 -175351783 - AluJo SINE Alu -11 301 1 213 94 0 0 chrX 1622583 1622615 -175351525 + (TAA)n Simple_repeat Simple_repeat 2 33 0 43 71 0 0 chrX 1622620 1622705 -175351435 + AT_rich Low_complexity Low_complexity 1 85 0 810 158 0 0 chrX 1622745 1622865 -175351275 + FLAM_C SINE Alu 6 125 -18 4523 97 8 0 chrX 1623162 1623749 -175350391 - L1PA10 LINE L1 -4 6164 5573 257 211 42 28 chrX 1623756 1623827 -175350313 - MLT1E3 LTR MaLR -8 616 545 1776 135 8 15 chrX 1624353 1624670 -175349470 + Tigger2 DNA MER2_type 1 2609 -109 216 202 10 40 chrX 1624741 1624840 -175349300 + (TATAA)n Simple_repeat Simple_repeat 2 97 0 182 123 27 55 chrX 1624882 1624955 -175349185 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 224 288 34 0 chrX 1624979 1625125 -175349015 + (TA)n Simple_repeat Simple_repeat 1 151 0 544 213 9 19 chrX 1625126 1625234 -175348906 + Tigger2 DNA MER2_type 2601 2707 -11 22 80 0 0 chrX 1625234 1625284 -175348856 + AT_rich Low_complexity Low_complexity 1 50 0 444 305 41 15 chrX 1625419 1625616 -175348524 + MLT1H LTR MaLR 87 288 -261 514 249 154 6 chrX 1625643 1625812 -175348328 + MLT1H LTR MaLR 356 549 0 430 260 26 42 chrX 1625879 1626071 -175348069 + HAL1 LINE L1 1486 1674 -833 24 109 0 0 chrX 1626625 1626726 -175347414 + AT_rich Low_complexity Low_complexity 1 101 0 828 173 0 0 chrX 1627659 1627786 -175346354 + FLAM_C SINE Alu 1 127 -16 1919 166 0 0 chrX 1628305 1628600 -175345540 - AluJb SINE Alu -15 297 3 2565 121 20 3 chrX 1628630 1628986 -175345154 + THE1B LTR MaLR 1 362 -2 1781 174 0 0 chrX 1630507 1630788 -175343352 - AluJb SINE Alu -23 289 9 1795 147 0 53 chrX 1631919 1632239 -175341901 - AluJo SINE Alu -9 303 1 1526 172 36 7 chrX 1632675 1632954 -175341186 + MER2 DNA MER2_type 28 314 -31 1274 186 17 0 chrX 1633017 1633253 -175340887 + AluJb SINE Alu 52 291 -21 234 179 0 0 chrX 1634386 1634442 -175339698 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 775 140 22 27 chrX 1634464 1634799 -175339341 + (TCTA)n Simple_repeat Simple_repeat 1 333 0 235 288 0 0 chrX 1635068 1635127 -175339013 + LTR16A LTR ERVL 385 443 -7 1827 160 3 3 chrX 1635613 1635907 -175338233 - AluJo SINE Alu -18 294 1 233 232 18 0 chrX 1635994 1636050 -175338090 - L1ME3A LINE L1 -114 6056 6000 1675 169 3 40 chrX 1636632 1636772 -175337368 - AluJo SINE Alu -20 292 148 2869 105 47 0 chrX 1636772 1637181 -175336959 + MSTA LTR MaLR 1 428 0 1675 169 3 40 chrX 1637181 1637342 -175336798 - AluJo SINE Alu -164 148 2 2302 121 23 69 chrX 1637715 1638152 -175335988 + L1PB4 LINE L1 5605 6021 -135 348 155 48 0 chrX 1638275 1638359 -175335781 + CT-rich Low_complexity Low_complexity 4 91 0 532 215 35 9 chrX 1638387 1638943 -175335197 + CT-rich Low_complexity Low_complexity 1 570 0 1801 185 91 8 chrX 1639581 1639964 -175334176 - MLT1D LTR MaLR -90 415 1 236 81 54 0 chrX 1639965 1640002 -175334138 - MLT1D LTR MaLR -455 50 12 277 188 42 0 chrX 1640010 1640058 -175334082 - MLT1D LTR MaLR -455 50 1 308 125 42 0 chrX 1640059 1640107 -175334033 - MLT1D LTR MaLR -455 50 1 1276 246 58 87 chrX 1640219 1640517 -175333623 + MER77 LTR ERV1 55 302 -303 2556 148 46 5 chrX 1640517 1640928 -175333212 + MSTA LTR MaLR 1 428 0 1276 246 58 87 chrX 1640928 1641216 -175332924 + MER77 LTR ERV1 302 597 -8 1642 173 10 33 chrX 1641348 1641830 -175332310 + AluJo SINE Alu 6 312 0 985 90 0 34 chrX 1641854 1642032 -175332108 + (GGAA)n Simple_repeat Simple_repeat 2 173 0 1861 175 9 62 chrX 1642389 1642765 -175331375 + L1MB8 LINE L1 5773 6126 -52 1618 195 30 0 chrX 1642765 1643062 -175331078 + AluJo SINE Alu 1 306 -6 1861 175 9 62 chrX 1643062 1643107 -175331033 + L1MB8 LINE L1 6126 6172 -6 722 242 6 0 chrX 1644100 1644257 -175329883 - L1PB4 LINE L1 -5 6151 5994 1589 161 56 7 chrX 1644391 1644677 -175329463 - MLT1A1 LTR MaLR -2 363 64 1964 174 17 62 chrX 1644723 1645126 -175329014 - MLT1B LTR MaLR -3 387 3 194 121 30 0 chrX 1645627 1645660 -175328480 + (CA)n Simple_repeat Simple_repeat 1 34 0 1884 148 13 10 chrX 1645907 1646212 -175327928 - AluJo SINE Alu -6 306 1 2525 120 3 0 chrX 1646234 1646600 -175327540 - L1PB4 LINE L1 0 6156 5790 1120 127 6 0 chrX 1646600 1646758 -175327382 + THE1B LTR MaLR 3 161 -203 8822 57 16 1 chrX 1646758 1648627 -175325513 - L1PA6 LINE L1 -4 6150 4287 1976 43 30 0 chrX 1648628 1648863 -175325277 + L1PA6 LINE L1 4045 4286 -1860 1141 115 72 48 chrX 1648863 1649071 -175325069 + THE1B LTR MaLR 152 364 0 1298 119 12 27 chrX 1649071 1649323 -175324817 - L1PB4 LINE L1 -360 5796 5550 1253 219 32 69 chrX 1649907 1649980 -175324160 + MLT1A1 LTR MaLR 1 75 -290 2028 117 23 94 chrX 1649980 1650373 -175323767 + MLT1A1 LTR MaLR 1 365 0 1253 219 32 69 chrX 1650373 1650678 -175323462 + MLT1A1 LTR MaLR 75 365 0 2121 156 35 20 chrX 1650854 1651043 -175323097 + L1MA7 LINE L1 5889 6074 -217 2363 129 116 13 chrX 1651043 1651431 -175322709 - MSTA LTR MaLR 0 428 1 2121 156 35 20 chrX 1651431 1651638 -175322502 + L1MA7 LINE L1 6074 6291 0 885 147 27 7 chrX 1652110 1652260 -175321880 - L1MA4 LINE L1 -302 5998 5846 586 258 113 36 chrX 1652260 1652589 -175321551 + MER20B DNA MER1_type 292 645 -138 398 171 0 0 chrX 1652731 1652801 -175321339 + L1PB4 LINE L1 6079 6148 -8 950 63 39 16 chrX 1652805 1652954 -175321186 + L1PA10 LINE L1 6039 6168 0 510 279 63 82 chrX 1652973 1653343 -175320797 - L1ME3A LINE L1 -248 5922 5579 2161 110 7 0 chrX 1653343 1653635 -175320505 + AluSx SINE Alu 1 294 -18 510 279 63 82 chrX 1653635 1653861 -175320279 - L1ME3A LINE L1 -591 5579 5350 509 254 117 64 chrX 1653905 1654298 -175319842 - L1ME3A LINE L1 -867 5279 4866 282 379 11 32 chrX 1654337 1654527 -175319613 + LTR16C LTR ERVL 73 258 -233 1210 213 54 57 chrX 1654587 1654972 -175319168 - MLT1B LTR MaLR 0 467 4 524 124 0 157 chrX 1655380 1655426 -175318714 + Tigger5 DNA MER2_type 2222 2239 -84 1869 166 16 3 chrX 1655426 1655734 -175318406 - AluJo SINE Alu 0 312 1 524 124 0 157 chrX 1655734 1655808 -175318332 + Tigger5 DNA MER2_type 2239 2323 0 1406 137 5 0 chrX 1656447 1656666 -175317474 - MLT1B LTR MaLR -12 378 159 1249 172 5 9 chrX 1656667 1656902 -175317238 - MLT1B LTR MaLR 0 396 158 1397 225 30 48 chrX 1656904 1657302 -175316838 - MLT1B LTR MaLR -1 395 1 574 213 22 7 chrX 1657667 1658215 -175315925 + GA-rich Low_complexity Low_complexity 1 556 0 236 374 0 0 chrX 1658216 1658299 -175315841 + A-rich Low_complexity Low_complexity 4 86 0 274 132 0 0 chrX 1658550 1658588 -175315552 - MER20 DNA MER1_type 0 219 182 409 105 0 0 chrX 1658589 1658646 -175315494 - Alu SINE Alu -16 296 240 2402 145 3 3 chrX 1658733 1659092 -175315048 - THE1B LTR MaLR 0 364 6 4149 153 15 44 chrX 1659092 1659496 -175314644 + LTR62 LTR ERVK 3 378 -341 1629 167 3 44 chrX 1659496 1659813 -175314327 - AluJb SINE Alu -8 304 1 4149 153 15 44 chrX 1659813 1660142 -175313998 + LTR62 LTR ERVK 378 715 -4 2825 178 10 2 chrX 1660841 1661335 -175312805 - L1MB3 LINE L1 0 6183 5686 677 183 11 22 chrX 1661690 1661870 -175312270 + CT-rich Low_complexity Low_complexity 3 180 0 447 166 36 22 chrX 1661886 1662025 -175312115 + CT-rich Low_complexity Low_complexity 1 141 0 414 79 0 16 chrX 1662410 1662473 -175311667 - L1P4 LINE L1 -671 5495 5434 329 209 91 0 chrX 1662670 1662780 -175311360 + L1PA15 LINE L1 5196 5315 -831 564 231 103 15 chrX 1662780 1662983 -175311157 - THE1C LTR MaLR 0 375 155 795 148 56 14 chrX 1663104 1663246 -175310894 - THE1C LTR MaLR -227 148 1 4565 119 1 35 chrX 1663247 1663963 -175310177 + L1PA15 LINE L1 5312 6003 -162 3231 86 36 2 chrX 1663955 1664396 -175309744 - L1PA13 LINE L1 -25 6138 5683 * 2157 123 0 0 chrX 1665226 1665511 -175308629 - AluSx SINE Alu -17 295 11 357 109 0 0 chrX 1666760 1666815 -175307325 + (TC)n Simple_repeat Simple_repeat 2 56 0 1083 236 96 47 chrX 1667007 1667413 -175306727 - MER77 LTR ERV1 -7 598 173 370 288 58 14 chrX 1667461 1667600 -175306540 - MER77 LTR ERV1 -406 199 55 191 35 0 35 chrX 1667871 1667900 -175306240 + (TA)n Simple_repeat Simple_repeat 1 28 0 27 29 0 0 chrX 1667948 1667982 -175306158 + AT_rich Low_complexity Low_complexity 1 34 0 440 150 35 0 chrX 1668015 1668128 -175306012 + (TA)n Simple_repeat Simple_repeat 1 117 0 321 206 14 14 chrX 1668128 1668201 -175305939 - Tigger5 DNA MER2_type 0 2323 2251 233 224 0 35 chrX 1668169 1668227 -175305913 - Tigger5 DNA MER2_type -2267 56 1 * 227 176 0 0 chrX 1668251 1668285 -175305855 - Tigger5 DNA MER2_type -17 2306 2273 831 187 0 0 chrX 1668305 1668439 -175305701 + AluJo SINE Alu 1 134 -178 1715 195 7 0 chrX 1668453 1668751 -175305389 + AluJo SINE Alu 1 300 -12 180 176 0 0 chrX 1668790 1668824 -175305316 + (CATA)n Simple_repeat Simple_repeat 3 36 0 606 262 12 0 chrX 1668908 1669080 -175305060 + MER96B DNA MER1_type? 1 174 -243 932 151 0 0 chrX 1669543 1669689 -175304451 + L1PA15 LINE L1 5643 5788 -368 211 257 14 14 chrX 1669690 1669724 -175304416 + (TA)n Simple_repeat Simple_repeat 1 34 -40 571 113 0 0 chrX 1669724 1669804 -175304336 - MADE1 DNA Mariner 0 80 1 211 257 14 14 chrX 1669804 1669843 -175304297 + (TA)n Simple_repeat Simple_repeat 33 74 0 318 267 0 22 chrX 1669844 1669934 -175304206 + L1MC4 LINE L1 6616 6703 -1339 265 127 1 52 chrX 1669968 1670026 -175304114 - L1P2 LINE L1 -327 5828 5774 1280 173 18 162 chrX 1670048 1670498 -175303642 + L1PA15 LINE L1 5781 6165 0 33 0 0 0 chrX 1670503 1670536 -175303604 + AT_rich Low_complexity Low_complexity 1 33 0 1787 154 20 29 chrX 1671318 1671624 -175302516 + AluJo SINE Alu 1 303 -9 472 101 130 0 chrX 1671893 1671962 -175302178 - AluJb SINE Alu -26 286 209 875 124 58 0 chrX 1671962 1672099 -175302041 + LTR12 LTR ERV1 336 480 -234 266 225 38 0 chrX 1672100 1672180 -175301960 - L1M4 LINE L1 -287 5897 5815 1633 150 33 57 chrX 1672191 1672524 -175301616 - L1MC1 LINE L1 0 6333 6009 4147 113 0 11 chrX 1672524 1673084 -175301056 + MER41A LTR ERV1 1 554 0 2337 116 42 33 chrX 1674076 1674437 -175299703 - THE1B LTR MaLR 0 364 1 497 193 28 0 chrX 1674700 1674845 -175299295 + (TA)n Simple_repeat Simple_repeat 1 149 0 719 205 22 32 chrX 1674853 1674871 -175299269 - MLT1B LTR MaLR -109 358 341 2265 118 29 50 chrX 1674871 1675254 -175298886 - THE1C LTR MaLR 0 375 1 719 205 22 32 chrX 1675254 1675420 -175298720 - MLT1B LTR MaLR -126 341 176 813 178 0 22 chrX 1675425 1675560 -175298580 - FLAM_C SINE Alu -10 133 2 751 212 11 38 chrX 1675560 1675744 -175298396 - MLT1B LTR MaLR -210 180 2 1149 116 0 0 chrX 1676107 1676262 -175297878 - AluSg/x SINE Alu -17 295 141 2256 90 0 29 chrX 1676265 1676577 -175297563 - AluSx SINE Alu -9 303 1 1695 182 3 35 chrX 1676684 1677003 -175297137 - AluJo SINE Alu -3 309 1 1916 167 0 0 chrX 1677320 1677613 -175296527 + AluJo SINE Alu 1 293 -19 2081 141 3 0 chrX 1677912 1678211 -175295929 + AluSx SINE Alu 1 300 -12 189 0 0 0 chrX 1678409 1678430 -175295710 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1498 169 63 11 chrX 1678610 1678894 -175295246 - AluJo SINE Alu -11 301 3 801 180 0 22 chrX 1678902 1679041 -175295099 - FLAM_C SINE Alu 0 143 8 224 322 76 34 chrX 1681897 1682015 -175292125 - MIR3 SINE MIR -3 205 83 1822 176 0 28 chrX 1682125 1682444 -175291696 + AluJo SINE Alu 1 310 -2 1993 152 0 0 chrX 1682559 1682869 -175291271 - AluSx SINE Alu -2 310 1 216 184 0 0 chrX 1682952 1683001 -175291139 + (TG)n Simple_repeat Simple_repeat 1 49 0 31 26 0 0 chrX 1683571 1683609 -175290531 + AT_rich Low_complexity Low_complexity 1 38 0 1594 161 4 11 chrX 1683621 1683881 -175290259 - AluJb SINE Alu -54 258 1 21 0 0 0 chrX 1683882 1683903 -175290237 + AT_rich Low_complexity Low_complexity 1 21 0 832 171 0 36 chrX 1684028 1684168 -175289972 + AluJb SINE Alu 1 135 -177 1681 168 10 17 chrX 1684168 1684460 -175289680 + AluJb SINE Alu 1 290 -22 2379 103 3 0 chrX 1684828 1685130 -175289010 + AluSq SINE Alu 1 303 -10 1034 145 54 0 chrX 1685130 1685296 -175288844 + AluSq SINE Alu 134 308 -5 1198 130 12 0 chrX 1685391 1685560 -175288580 + AluSg/x SINE Alu 132 302 -10 938 142 25 12 chrX 1686181 1686343 -175287797 - FRAM SINE Alu -13 163 1 180 0 0 0 chrX 1686726 1686746 -175287394 + (TA)n Simple_repeat Simple_repeat 1 20 0 2408 82 0 0 chrX 1686836 1687127 -175287013 - AluSx SINE Alu -8 304 14 4654 79 92 0 chrX 1687446 1688078 -175286062 - LTR8 LTR ERV1 -1 690 1 2687 116 83 2 chrX 1688596 1688992 -175285148 + MSTA LTR MaLR 1 428 0 2092 128 0 0 chrX 1689097 1689387 -175284753 + AluSx SINE Alu 1 290 -22 2265 92 0 3 chrX 1689852 1690144 -175283996 + AluSc SINE Alu 1 291 -18 21 0 0 0 chrX 1690144 1690165 -175283975 + AT_rich Low_complexity Low_complexity 1 21 0 2124 137 0 3 chrX 1690232 1690538 -175283602 - AluSx SINE Alu -4 308 4 2058 71 0 8 chrX 1691101 1691356 -175282784 + AluSq SINE Alu 1 253 -60 919 182 18 0 chrX 1691356 1691521 -175282619 + AluJb SINE Alu 145 312 0 904 126 0 14 chrX 1692030 1692173 -175281967 - FRAM SINE Alu -3 173 33 29 0 0 0 chrX 1692519 1692548 -175281592 + AT_rich Low_complexity Low_complexity 1 29 0 211 237 40 45 chrX 1692804 1692981 -175281159 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 393 203 38 30 chrX 1692906 1693276 -175280864 + (TA)n Simple_repeat Simple_repeat 1 372 0 738 231 40 5 chrX 1693755 1693954 -175280186 + MER20 DNA MER1_type 7 212 -7 224 256 33 44 chrX 1694441 1694621 -175279519 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 222 192 62 27 chrX 1694556 1694702 -175279438 + (TA)n Simple_repeat Simple_repeat 1 151 0 * 230 259 25 49 chrX 1694697 1694859 -175279281 + (TATAA)n Simple_repeat Simple_repeat 5 162 0 210 241 59 6 chrX 1694945 1695115 -175279025 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 328 166 44 61 chrX 1695049 1695230 -175278910 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 1081 146 45 10 chrX 1695523 1695722 -175278418 - L1MB5 LINE L1 -11 6163 5958 617 246 6 18 chrX 1695728 1695899 -175278241 - L1MB5 LINE L1 -393 5781 5613 1913 164 3 0 chrX 1695925 1696218 -175277922 + AluJb SINE Alu 1 294 -18 185 217 87 76 chrX 1696381 1696473 -175277667 + L2 LINE L2 942 1034 -2280 726 223 113 87 chrX 1696880 1697373 -175276767 - MER34C LTR ERV1 -75 490 5 242 156 44 22 chrX 1697626 1697671 -175276469 + MLT1C LTR MaLR 130 175 -215 885 142 0 47 chrX 1697675 1697823 -175276317 + AluJb SINE Alu 1 141 -171 1207 225 30 27 chrX 1697850 1698148 -175275992 + MLT1C LTR MaLR 169 467 0 21 0 0 0 chrX 1698349 1698370 -175275770 + AT_rich Low_complexity Low_complexity 1 21 0 3736 120 24 0 chrX 1698453 1698987 -175275153 - L1PB4 LINE L1 0 6156 5610 2423 87 0 13 chrX 1699159 1699469 -175274671 - AluSq SINE Alu -5 308 3 23 0 0 0 chrX 1700094 1700117 -175274023 + AT_rich Low_complexity Low_complexity 1 23 0 206 174 0 22 chrX 1700304 1700350 -175273790 + A-rich Low_complexity Low_complexity 3 47 0 357 145 0 0 chrX 1700388 1700464 -175273676 + (TG)n Simple_repeat Simple_repeat 2 77 0 1869 148 39 7 chrX 1701224 1701507 -175272633 + AluJo SINE Alu 2 293 -19 911 137 6 22 chrX 1701514 1701697 -175272443 + (GAA)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chrX 1701743 1701768 -175272372 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 731 313 47 49 chrX 1702188 1702702 -175271438 - MER34 LTR ERV1 -29 513 1 395 185 31 17 chrX 1702827 1703201 -175270939 + GA-rich Low_complexity Low_complexity 1 379 0 225 254 48 0 chrX 1703212 1703275 -175270865 + GA-rich Low_complexity Low_complexity 3 68 0 231 114 0 0 chrX 1703282 1703317 -175270823 + (GA)n Simple_repeat Simple_repeat 1 35 0 374 100 17 0 chrX 1703463 1703523 -175270617 - MER4E LTR ERV1 0 779 719 2600 91 0 6 chrX 1703523 1703875 -175270265 - MER41A LTR ERV1 0 554 205 1006 143 20 31 chrX 1703858 1704054 -175270086 + MER39B LTR ERV1 76 269 -384 * 556 177 10 0 chrX 1704056 1704152 -175269988 + AluJ/FLAM SINE Alu 2 98 -214 369 190 10 47 chrX 1705419 1705691 -175268449 + CT-rich Low_complexity Low_complexity 1 261 0 899 143 0 0 chrX 1705698 1705831 -175268309 - FLAM_C SINE Alu 0 133 1 1070 153 49 0 chrX 1705831 1706034 -175268106 + MER65A LTR ERV1 233 445 0 1883 160 13 7 chrX 1707267 1707574 -175266566 - AluJb SINE Alu -3 309 1 324 127 0 0 chrX 1707628 1707683 -175266457 + (TG)n Simple_repeat Simple_repeat 2 56 0 616 176 43 152 chrX 1707704 1707914 -175266226 + MER39B LTR ERV1 65 251 -402 2195 113 0 0 chrX 1708730 1709058 -175265082 - AluSx SINE Alu 0 328 1 389 174 12 23 chrX 1710079 1710165 -175263975 + L1MC2 LINE L1 6084 6168 -176 650 116 0 11 chrX 1710165 1710260 -175263880 + MER4A LTR ERV1 1 94 -570 1616 98 61 292 chrX 1710260 1710985 -175263155 + LTR12 LTR ERV1 2 558 -156 2250 141 18 39 chrX 1710997 1711513 -175262627 + MER4A LTR ERV1 90 662 -2 265 216 0 0 chrX 1711515 1711566 -175262574 + L1MC2 LINE L1 6165 6215 -129 3448 110 15 68 chrX 1711591 1711622 -175262518 + MER4B LTR ERV1 1 32 -747 2197 113 3 3 chrX 1711622 1711922 -175262218 + AluSx SINE Alu 1 300 -12 3448 110 15 68 chrX 1711922 1712452 -175261688 + MER4B LTR ERV1 32 694 -85 4078 141 5 11 chrX 1712452 1713091 -175261049 + MER41B LTR ERV1 1 635 0 3448 110 15 68 chrX 1713091 1713173 -175260967 + MER4B LTR ERV1 694 779 0 403 122 73 0 chrX 1713177 1713259 -175260881 + L1MC2 LINE L1 6255 6342 -2 255 109 46 45 chrX 1714394 1714452 -175259688 - MLT2B2 LTR ERVL 0 515 475 1819 192 73 84 chrX 1714455 1715001 -175259139 + LTR64 LTR ERVK 1 540 -18 735 177 0 48 chrX 1715003 1715150 -175258990 - FLAM_C SINE Alu -2 141 2 311 81 40 14 chrX 1715168 1715242 -175258898 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 1131 179 25 0 chrX 1715491 1715692 -175258448 + MLT2C1 LTR ERVL 1 206 -191 1419 144 0 0 chrX 1715692 1715907 -175258233 + AluSg/x SINE Alu 85 299 -13 1377 160 43 19 chrX 1715907 1716163 -175257977 + MLT2C2 LTR ERVL 198 459 -5 3598 58 9 0 chrX 1716656 1717088 -175257052 - MLT2A1 LTR ERVL -8 436 1 2205 91 3 0 chrX 1717198 1717483 -175256657 + AluY SINE Alu 1 286 -25 32 0 0 0 chrX 1717483 1717515 -175256625 + AT_rich Low_complexity Low_complexity 1 32 0 1811 80 4 4 chrX 1717699 1717925 -175256215 - AluSc SINE Alu -83 226 1 1459 185 45 24 chrX 1718426 1718713 -175255427 - AluJb SINE Alu -19 293 1 200 122 0 49 chrX 1720067 1720108 -175254032 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1044 220 46 85 chrX 1720726 1720908 -175253232 - MER39 LTR ERV1 0 707 520 1716 157 3 21 chrX 1720908 1721195 -175252945 - AluSx SINE Alu -30 282 1 1044 220 46 85 chrX 1721195 1721460 -175252680 - MER39 LTR ERV1 -187 520 150 226 36 0 0 chrX 1721577 1721605 -175252535 + Alu SINE Alu 74 101 -201 248 222 4 0 chrX 1721682 1721741 -175252399 - MER39 LTR ERV1 -584 60 1 207 0 0 0 chrX 1722106 1722129 -175252011 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 721 199 0 0 chrX 1722129 1722260 -175251880 - FRAM SINE Alu -1 175 45 280 257 14 0 chrX 1722262 1722332 -175251808 - MER34C LTR ERV1 -491 94 24 1063 247 0 0 chrX 1722452 1722675 -175251465 + MER58A DNA MER1_type 2 224 0 1914 179 65 3 chrX 1722998 1723367 -175250773 + MER89 LTR ERV1 168 559 0 1902 166 28 8 chrX 1724150 1724506 -175249634 - MLT1A1 LTR MaLR -2 363 1 644 205 0 0 chrX 1724833 1724945 -175249195 + FLAM_A SINE Alu 6 117 -25 1168 0 38 13 chrX 1724946 1725105 -175249035 + (TAGA)n Simple_repeat Simple_repeat 4 166 0 392 353 95 17 chrX 1725235 1725530 -175248610 - L1MC4a LINE L1 -1879 5929 5612 2757 134 5 2 chrX 1726464 1726867 -175247273 + MSTA-int LTR MaLR 1248 1651 0 2488 133 70 0 chrX 1726869 1727267 -175246873 + MSTA LTR MaLR 3 428 0 3836 99 4 4 chrX 1727780 1728315 -175245825 - L1PA11 LINE L1 -1 6173 5639 1644 163 41 24 chrX 1729285 1729404 -175244736 + AluJb SINE Alu 1 116 -196 303 49 0 0 chrX 1729404 1729445 -175244695 + (CA)n Simple_repeat Simple_repeat 2 42 0 1644 163 41 24 chrX 1729445 1729619 -175244521 + AluJb SINE Alu 116 299 -13 267 257 36 36 chrX 1730266 1730406 -175243734 + (TA)n Simple_repeat Simple_repeat 1 140 0 2651 46 0 0 chrX 1730712 1731019 -175243121 - AluY SINE Alu -4 307 1 1752 149 57 20 chrX 1731022 1731323 -175242817 - AluJb SINE Alu 0 312 1 2163 127 0 7 chrX 1732039 1732346 -175241794 - AluSx SINE Alu -7 305 1 1751 174 7 3 chrX 1733028 1733326 -175240814 + AluJo SINE Alu 1 299 -13 425 237 59 25 chrX 1733552 1733670 -175240470 + MLT1J LTR MaLR 226 347 -164 1774 166 39 3 chrX 1733759 1734043 -175240097 - AluJo SINE Alu -18 294 1 1934 147 0 20 chrX 1734443 1734735 -175239405 + AluJo SINE Alu 1 286 -26 1769 165 3 7 chrX 1735038 1735323 -175238817 + AluJb SINE Alu 24 307 -5 239 53 0 26 chrX 1735357 1735395 -175238745 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 805 167 177 37 chrX 1735486 1735701 -175238439 - L1PA16 LINE L1 0 6166 5922 * 937 135 0 0 chrX 1735697 1735830 -175238310 + L1PA16 LINE L1 5786 5918 -248 1850 128 28 24 chrX 1737051 1737339 -175236801 - AluJo SINE Alu -23 289 1 313 156 0 78 chrX 1738471 1738548 -175235592 - MER53 DNA DNA 0 189 119 401 129 14 0 chrX 1738689 1738759 -175235381 + (TA)n Simple_repeat Simple_repeat 1 71 0 2203 111 9 19 chrX 1738760 1739075 -175235065 - AluSx SINE Alu 0 312 1 2144 122 21 0 chrX 1739194 1739482 -175234658 + AluSq SINE Alu 1 294 -19 30 27 0 0 chrX 1739709 1739746 -175234394 + AT_rich Low_complexity Low_complexity 1 37 0 426 133 0 53 chrX 1739781 1739856 -175234284 + AluS SINE Alu 2 72 -246 1841 171 3 0 chrX 1740231 1740557 -175233583 - AluJo SINE Alu 0 312 1 836 150 111 28 chrX 1740669 1740849 -175233291 - MER4E-int LTR ERV1 -1653 5105 4911 1658 174 0 7 chrX 1740849 1741131 -175233009 - MER4E LTR ERV1 0 779 500 3508 138 29 16 chrX 1741145 1741705 -175232435 + MER50 LTR ERV1 1 571 -163 2430 76 0 7 chrX 1741705 1742007 -175232133 - AluSq SINE Alu -13 300 1 3508 138 29 16 chrX 1742007 1742026 -175232114 + MER50 LTR ERV1 571 588 -146 1001 137 18 12 chrX 1742026 1742194 -175231946 - MER4E-int LTR ERV1 -2421 4337 4169 1600 99 5 9 chrX 1742194 1742407 -175231733 + AluSq SINE Alu 85 296 -17 471 138 0 0 chrX 1742423 1742503 -175231637 - MER4E-int LTR ERV1 -2572 4186 4107 2881 118 60 128 chrX 1742525 1742632 -175231508 + MER4A LTR ERV1 2 115 -664 207 0 0 0 chrX 1742632 1742655 -175231485 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2881 118 60 128 chrX 1742655 1743253 -175230887 + MER4A LTR ERV1 115 779 0 769 145 7 62 chrX 1743253 1743398 -175230742 - MER4E-int LTR ERV1 -2653 4105 3969 281 186 17 0 chrX 1743398 1743457 -175230683 + MER72 LTR ERV1 663 722 0 4459 105 2 3 chrX 1743480 1744081 -175230059 - MER4A LTR ERV1 0 600 1 4899 136 8 45 chrX 1744081 1744093 -175230047 - MER4E-int LTR ERV1 -2794 3964 3953 2061 159 14 30 chrX 1744093 1744463 -175229677 + THE1B LTR MaLR 1 364 0 4899 136 8 45 chrX 1744463 1744796 -175229344 - MER4E-int LTR ERV1 -2805 3953 3609 2101 134 0 3 chrX 1744796 1745088 -175229052 + AluSx SINE Alu 5 295 -17 4899 136 8 45 chrX 1745088 1745190 -175228950 - MER4E-int LTR ERV1 -3149 3609 3505 1477 115 55 0 chrX 1745190 1745408 -175228732 - MER30 DNA MER1_type 0 230 1 4899 136 8 45 chrX 1745408 1745802 -175228338 - MER4E-int LTR ERV1 -3253 3505 3152 1379 201 21 97 chrX 1745802 1746086 -175228054 + LTR9 LTR ERV1 1 305 -307 2293 83 0 10 chrX 1746086 1746408 -175227732 + AluSq SINE Alu 1 319 0 1379 201 21 97 chrX 1746408 1746462 -175227678 + LTR9 LTR ERV1 305 305 -307 1998 91 4 0 chrX 1746462 1746716 -175227424 + AluSp SINE Alu 47 301 -12 1379 201 21 97 chrX 1746716 1746798 -175227342 + LTR9 LTR ERV1 304 391 -221 936 184 116 54 chrX 1746776 1747053 -175227087 + LTR19C LTR ERV1 486 779 0 * 1558 151 36 4 chrX 1747054 1747332 -175226808 - MER4E-int LTR ERV1 -3604 3154 2868 963 271 43 88 chrX 1747343 1747853 -175226287 + LTR1B LTR ERV1 39 603 -302 12805 150 64 73 chrX 1747959 1748184 -175225956 - MER4E-int LTR ERV1 -3885 2873 2647 1619 163 10 27 chrX 1748184 1748484 -175225656 + AluJo SINE Alu 1 295 -17 12805 150 64 73 chrX 1748484 1749094 -175225046 - MER4E-int LTR ERV1 -4111 2647 2033 2193 119 0 10 chrX 1749094 1749396 -175224744 - AluSg SINE Alu -11 299 1 12805 150 64 73 chrX 1749396 1749473 -175224667 - MER4E-int LTR ERV1 -4725 2033 1957 2158 119 0 3 chrX 1749473 1749776 -175224364 + AluSx SINE Alu 1 302 -10 12805 150 64 73 chrX 1749776 1750680 -175223460 - MER4E-int LTR ERV1 -4801 1957 1046 2257 105 20 0 chrX 1750680 1750986 -175223154 + AluSx SINE Alu 1 312 0 12805 150 64 73 chrX 1750986 1752060 -175222080 - MER4E-int LTR ERV1 -5712 1046 6 2367 159 84 16 chrX 1752064 1752504 -175221636 - MER4E LTR ERV1 0 779 310 987 219 21 29 chrX 1752504 1752710 -175221430 + L1MC4 LINE L1 7316 7521 -521 2209 110 0 0 chrX 1752710 1753009 -175221131 + AluSx SINE Alu 1 299 -13 987 219 21 29 chrX 1753009 1753044 -175221096 + L1MC4 LINE L1 7521 7555 -487 244 254 59 35 chrX 1753078 1753247 -175220893 - L1M4 LINE L1 -3861 2285 2113 1653 155 3 91 chrX 1753669 1753688 -175220452 - AluJo SINE Alu -6 306 287 180 0 0 0 chrX 1753688 1753708 -175220432 + (TAG)n Simple_repeat Simple_repeat 1 20 0 1653 155 3 91 chrX 1753708 1754017 -175220123 - AluJo SINE Alu -25 287 7 2259 122 70 14 chrX 1754188 1754532 -175219608 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chrX 1754979 1755009 -175219131 + AT_rich Low_complexity Low_complexity 1 30 0 323 34 134 0 chrX 1755009 1755128 -175219012 + (TA)n Simple_repeat Simple_repeat 2 136 0 403 222 0 30 chrX 1755131 1755230 -175218910 - L1MA7 LINE L1 -25 6266 6171 * 432 149 14 0 chrX 1755228 1755302 -175218838 + L1MA7 LINE L1 6043 6117 -174 307 308 47 0 chrX 1755409 1755516 -175218624 - MIR SINE MIR -52 210 99 1980 60 0 8 chrX 1755963 1756213 -175217927 + AluSq SINE Alu 1 248 -65 488 118 13 0 chrX 1756431 1756507 -175217633 + Alu SINE Alu 225 301 -10 456 132 44 22 chrX 1756507 1756598 -175217542 - L1MB3 LINE L1 -5 6178 6086 2070 121 0 3 chrX 1756600 1756882 -175217258 + AluSx SINE Alu 6 286 -26 544 145 13 0 chrX 1756918 1756994 -175217146 + AluJ/FLAM SINE Alu 2 78 -234 1848 166 130 13 chrX 1757024 1757416 -175216724 + MER66B LTR ERV1 48 485 -1 531 284 132 11 chrX 1757667 1757857 -175216283 - MIR SINE MIR -2 260 48 217 115 19 39 chrX 1759152 1759204 -175214936 + CT-rich Low_complexity Low_complexity 3 53 0 661 169 11 33 chrX 1759220 1759403 -175214737 + CT-rich Low_complexity Low_complexity 2 180 0 1136 153 0 0 chrX 1759461 1759638 -175214502 - AluSg/x SINE Alu 0 310 134 380 239 69 96 chrX 1759784 1760002 -175214138 + MLT1L LTR MaLR 225 461 -75 1377 237 72 70 chrX 1760581 1760628 -175213512 + MER74B LTR ERVL 57 102 -520 1559 166 72 11 chrX 1760628 1760906 -175213234 - AluJo SINE Alu -17 295 1 1377 237 72 70 chrX 1760906 1760986 -175213154 + MER74B LTR ERVL 102 180 -442 2049 127 81 35 chrX 1760986 1761333 -175212807 + THE1B LTR MaLR 2 364 0 1377 237 72 70 chrX 1761333 1761744 -175212396 + MER74B LTR ERVL 180 597 -25 576 192 135 0 chrX 1761754 1761858 -175212282 + FLAM_C SINE Alu 1 118 -15 32 0 0 0 chrX 1761858 1761890 -175212250 + AT_rich Low_complexity Low_complexity 1 32 0 2159 117 0 0 chrX 1761943 1762250 -175211890 + AluSx SINE Alu 1 307 0 324 158 0 0 chrX 1762593 1762650 -175211490 + GA-rich Low_complexity Low_complexity 3 59 0 1254 82 10 46 chrX 1762670 1762865 -175211275 - AluSg/x SINE Alu -4 308 121 469 210 4 4 chrX 1763041 1763279 -175210861 + GA-rich Low_complexity Low_complexity 1 238 0 2167 151 34 77 chrX 1763635 1764131 -175210009 + L1MA8 LINE L1 5816 6290 -1 314 197 17 11 chrX 1764884 1765062 -175209078 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrX 1765062 1765083 -175209057 + AT_rich Low_complexity Low_complexity 1 21 0 290 250 35 43 chrX 1765083 1765199 -175208941 - L1MA5A LINE L1 -11 6286 6172 534 259 179 0 chrX 1765220 1765382 -175208758 + MIR SINE MIR 42 232 -30 264 184 41 0 chrX 1765415 1765562 -175208578 + (TA)n Simple_repeat Simple_repeat 2 154 0 236 210 30 10 chrX 1765581 1765894 -175208246 + (TA)n Simple_repeat Simple_repeat 1 319 0 498 278 179 0 chrX 1765978 1766140 -175208000 - MIR SINE MIR -30 232 42 667 171 0 16 chrX 1766161 1766284 -175207856 + L1MA5A LINE L1 6172 6292 -5 24 85 0 0 chrX 1766297 1766356 -175207784 + AT_rich Low_complexity Low_complexity 1 59 0 2046 96 25 53 chrX 1766854 1767064 -175207076 + L1PB1 LINE L1 5475 5689 -462 2133 108 0 0 chrX 1767064 1767343 -175206797 + AluSx SINE Alu 1 279 -33 264 30 0 0 chrX 1767343 1767376 -175206764 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2046 96 25 53 chrX 1767376 1767486 -175206654 + L1PB1 LINE L1 5687 5787 -364 294 29 0 0 chrX 1767688 1767723 -175206417 + (CA)n Simple_repeat Simple_repeat 1 35 0 2865 69 6 0 chrX 1767723 1768073 -175206067 + L1PB1 LINE L1 5793 6144 -7 3278 170 17 7 chrX 1768306 1768883 -175205257 + L1MA8 LINE L1 5696 6278 -13 229 155 0 71 chrX 1768906 1768990 -175205150 + A-rich Low_complexity Low_complexity 1 78 0 1714 137 63 4 chrX 1769058 1769329 -175204811 + AluJo SINE Alu 9 295 -17 28 0 0 0 chrX 1769371 1769399 -175204741 + AT_rich Low_complexity Low_complexity 1 28 0 1804 138 0 56 chrX 1769934 1770253 -175203887 + AluJo SINE Alu 1 301 -11 1834 98 8 0 chrX 1770791 1771036 -175203104 - AluSx SINE Alu -16 296 50 310 97 0 32 chrX 1771468 1771530 -175202610 + (CA)n Simple_repeat Simple_repeat 2 61 0 240 301 27 0 chrX 1771540 1771613 -175202527 + GA-rich Low_complexity Low_complexity 5 79 0 1712 147 41 10 chrX 1772551 1772844 -175201296 - AluJo SINE Alu -10 302 1 1049 189 0 0 chrX 1773009 1773178 -175200962 - AluSx SINE Alu -15 295 127 279 0 0 0 chrX 1773194 1773225 -175200915 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 40424 73 10 7 chrX 1773225 1779334 -175194806 - L1PA6 LINE L1 -11 6143 11 1143 82 0 0 chrX 1779345 1779480 -175194660 - AluSx SINE Alu -178 135 1 1637 201 0 26 chrX 1779781 1780090 -175194050 - AluJo SINE Alu -11 301 1 1742 185 7 0 chrX 1780158 1780461 -175193679 + 7SLRNA srpRNA srpRNA 16 320 0 1997 138 7 0 chrX 1782088 1782385 -175191755 + AluSx SINE Alu 3 301 -11 1627 174 7 37 chrX 1782400 1782699 -175191441 + AluJo SINE Alu 1 290 -22 22 0 0 0 chrX 1782699 1782721 -175191419 + AT_rich Low_complexity Low_complexity 1 22 0 679 270 42 5 chrX 1782757 1782972 -175191168 - LTR16C LTR ERVL -45 446 224 306 62 0 0 chrX 1783298 1783346 -175190794 - AluSp/q SINE Alu 0 303 256 239 321 0 42 chrX 1783484 1783652 -175190488 + T-rich Low_complexity Low_complexity 2 162 0 206 398 12 12 chrX 1783610 1783771 -175190369 + CT-rich Low_complexity Low_complexity 3 163 0 * 2320 167 29 12 chrX 1783960 1784379 -175189761 + L1MC1 LINE L1 5907 6332 -1 2070 119 0 4 chrX 1784386 1784683 -175189457 + AluSx SINE Alu 9 304 0 1237 236 0 0 chrX 1784683 1784925 -175189215 + AluJb SINE Alu 51 292 -20 1765 162 0 32 chrX 1785008 1785317 -175188823 + AluJb SINE Alu 1 299 -13 187 254 18 36 chrX 1785753 1785808 -175188332 - MIR SINE MIR -139 69 16 425 208 15 15 chrX 1786329 1786421 -175187719 + (TCTA)n Simple_repeat Simple_repeat 1 91 -554 2493 124 5 27 chrX 1786421 1786793 -175187347 - THE1B LTR MaLR 0 364 1 425 208 15 15 chrX 1786793 1786974 -175187166 + (TCTA)n Simple_repeat Simple_repeat 91 645 0 * 604 48 29 19 chrX 1786973 1787076 -175187064 + (TTTC)n Simple_repeat Simple_repeat 4 107 0 509 105 30 63 chrX 1787096 1787340 -175186800 + (TCTA)n Simple_repeat Simple_repeat 1 235 0 222 105 0 0 chrX 1787340 1787378 -175186762 + (TC)n Simple_repeat Simple_repeat 2 39 0 744 224 33 22 chrX 1788848 1789031 -175185109 + MLT1D LTR MaLR 1 185 -320 797 178 0 0 chrX 1789162 1789280 -175184860 + FLAM_C SINE Alu 1 118 -15 379 195 58 12 chrX 1789393 1789534 -175184606 + MLT1D LTR MaLR 191 360 -123 792 233 81 106 chrX 1789545 1790038 -175184102 + MLT1D LTR MaLR 1 481 -24 872 163 0 15 chrX 1790870 1791005 -175183135 + FLAM_C SINE Alu 1 133 0 2236 118 0 6 chrX 1791328 1791642 -175182498 - AluSx SINE Alu 0 312 1 1738 180 7 16 chrX 1792483 1792788 -175181352 + AluSx SINE Alu 3 304 -8 333 351 61 63 chrX 1792925 1793351 -175180789 + L2 LINE L2 2511 2936 -336 1350 249 32 99 chrX 1793351 1793418 -175180722 - LTR45 LTR ERV1 0 525 455 1595 185 10 3 chrX 1793418 1793710 -175180430 - AluJb SINE Alu -13 299 6 1350 249 32 99 chrX 1793710 1793859 -175180281 - LTR45 LTR ERV1 -70 455 298 1824 166 10 13 chrX 1793859 1794172 -175179968 + AluJo SINE Alu 1 312 0 1350 249 32 99 chrX 1794172 1794517 -175179623 - LTR45 LTR ERV1 -227 298 1 333 351 61 63 chrX 1794517 1794693 -175179447 + L2 LINE L2 2936 3108 -164 1114 214 18 7 chrX 1794973 1795249 -175178891 - L1MA4 LINE L1 0 6300 6022 813 150 21 50 chrX 1795389 1795529 -175178611 - AluJo SINE Alu -176 136 1 2249 110 0 3 chrX 1795572 1795873 -175178267 - AluSg SINE Alu -10 300 1 1036 203 5 0 chrX 1795898 1796095 -175178045 - AluJ SINE Alu -8 304 107 455 171 0 24 chrX 1796102 1796184 -175177956 + AluY SINE Alu 4 83 -228 * 820 148 0 0 chrX 1796176 1796291 -175177849 - AluJ SINE Alu -193 119 5 1051 139 0 0 chrX 1796356 1796514 -175177626 - FRAM SINE Alu -7 169 12 639 169 0 119 chrX 1796885 1797045 -175177095 + AluJb SINE Alu 149 289 -23 2172 197 10 18 chrX 1797045 1797446 -175176694 - MER57A LTR ERV1 -4 399 2 3428 168 21 33 chrX 1797669 1797876 -175176264 + LTR51 LTR ERV1 1 209 -462 1806 173 0 20 chrX 1797876 1798171 -175175969 - AluJb SINE Alu -23 289 1 3428 168 21 33 chrX 1798171 1798350 -175175790 + LTR51 LTR ERV1 209 389 -282 1796 154 48 7 chrX 1798350 1798642 -175175498 - AluJb SINE Alu -5 307 4 3428 168 21 33 chrX 1798642 1798919 -175175221 + LTR51 LTR ERV1 389 657 -14 7948 35 2 0 chrX 1798919 1800556 -175173584 + L1PA3 LINE L1 4514 6153 -2 347 194 83 28 chrX 1800632 1800740 -175173400 + MER34C LTR ERV1 37 150 -435 423 91 0 0 chrX 1800744 1800799 -175173341 - L1PA13 LINE L1 -69 6094 6040 489 186 21 10 chrX 1800799 1800896 -175173244 + MER4A LTR ERV1 1 98 -566 1694 129 25 73 chrX 1800896 1801259 -175172881 + MER4A LTR ERV1 261 664 0 1721 87 0 0 chrX 1801259 1801490 -175172650 - L1PA12 LINE L1 -125 6043 5813 767 243 44 56 chrX 1801532 1801941 -175172199 + MER34B LTR ERV1 76 557 -8 265 200 0 0 chrX 1801958 1802008 -175172132 + MER45A DNA AcHobo 79 128 -50 2948 113 5 27 chrX 1802008 1802168 -175171972 - MER57B LTR ERV1 0 434 272 2352 52 7 29 chrX 1802168 1802475 -175171665 + AluY SINE Alu 1 300 -11 2948 113 5 27 chrX 1802475 1802758 -175171382 - MER57B LTR ERV1 -162 272 1 265 226 20 0 chrX 1802780 1802851 -175171289 + MER45 DNA AcHobo 1506 1580 -1 1942 149 3 0 chrX 1803074 1803376 -175170764 + AluJb SINE Alu 1 303 -9 345 337 46 17 chrX 1805013 1805188 -175168952 - MIR SINE MIR -10 252 73 211 403 21 27 chrX 1805364 1805550 -175168590 + MIR3 SINE MIR 19 203 -5 1184 130 52 23 chrX 1805855 1806099 -175168041 - L1PB1 LINE L1 -215 5941 5693 2372 181 37 45 chrX 1806142 1806360 -175167780 - MER66B LTR ERV1 -3 483 265 1912 127 0 7 chrX 1806360 1806636 -175167504 - AluSx SINE Alu -3 309 36 2372 181 37 45 chrX 1806636 1806904 -175167236 - MER66B LTR ERV1 -221 265 1 181 336 26 43 chrX 1806908 1807024 -175167116 + MIR SINE MIR 10 123 -139 1020 211 26 103 chrX 1807053 1807469 -175166671 + MLT1B LTR MaLR 7 390 0 481 111 100 11 chrX 1807694 1807784 -175166356 + MER4A LTR ERV1 1 98 -566 1775 141 163 68 chrX 1807784 1808153 -175165987 + MER4A LTR ERV1 261 664 0 1069 203 64 0 chrX 1808403 1808639 -175165501 + AluJo SINE Alu 1 251 -61 2196 124 0 0 chrX 1808814 1809112 -175165028 - AluSx SINE Alu -14 298 1 1470 156 7 68 chrX 1810122 1810197 -175163943 + L1MA5A LINE L1 6006 6084 -213 3771 132 4 9 chrX 1810197 1810727 -175163413 + MER1A DNA MER1_type 1 527 0 1470 156 7 68 chrX 1810727 1810946 -175163194 + L1MA5A LINE L1 6084 6282 -15 180 111 0 0 chrX 1811141 1811168 -175162972 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 2157 128 0 3 chrX 1811374 1811679 -175162461 - AluSx SINE Alu -8 304 1 475 246 41 8 chrX 1811748 1811870 -175162270 - L1MA9 LINE L1 -9 6303 6178 1558 151 44 4 chrX 1812575 1812846 -175161294 + L1PA16 LINE L1 5875 6156 -10 21 36 0 0 chrX 1812846 1812874 -175161266 + AT_rich Low_complexity Low_complexity 1 28 0 2191 125 3 0 chrX 1812953 1813256 -175160884 - AluSp SINE Alu -9 304 1 2222 109 3 0 chrX 1813260 1813554 -175160586 - AluSq SINE Alu -13 300 6 2518 258 76 8 chrX 1813574 1814522 -175159618 + L1M4 LINE L1 4187 5198 -948 29 47 0 0 chrX 1814554 1814597 -175159543 + AT_rich Low_complexity Low_complexity 1 43 0 424 195 80 0 chrX 1814637 1814750 -175159390 - L1M4 LINE L1 -1382 4764 4643 323 277 0 0 chrX 1814753 1814818 -175159322 + MER2 DNA MER2_type 280 344 -1 211 216 0 54 chrX 1814844 1814918 -175159222 + T-rich Low_complexity Low_complexity 1 70 0 651 238 10 10 chrX 1814941 1815147 -175158993 - L1M4 LINE L1 -948 5198 4993 1629 156 7 19 chrX 1815149 1815418 -175158722 - MER2 DNA MER2_type -79 266 1 2138 123 3 3 chrX 1816529 1816839 -175157301 + AluSq SINE Alu 1 310 -3 2219 166 20 43 chrX 1817655 1818100 -175156040 + L1MA4 LINE L1 5586 6020 -280 412 172 35 0 chrX 1818103 1818190 -175155950 + L1MB3 LINE L1 6094 6183 0 235 347 31 0 chrX 1818767 1818865 -175155275 + L2 LINE L2 2936 3036 -277 24 0 0 0 chrX 1818865 1818889 -175155251 + AT_rich Low_complexity Low_complexity 1 24 0 506 260 82 41 chrX 1818927 1819146 -175154994 + L2 LINE L2 3034 3261 -52 2291 75 4 0 chrX 1819371 1819650 -175154490 - AluSc SINE Alu -17 292 13 3173 123 11 0 chrX 1819694 1820149 -175153991 + L1PB2 LINE L1 5683 6142 -9 2296 107 3 0 chrX 1821400 1821708 -175152432 + AluSg1 SINE Alu 1 309 0 25 31 0 0 chrX 1822436 1822468 -175151672 + AT_rich Low_complexity Low_complexity 1 32 0 1460 237 72 86 chrX 1822478 1823224 -175150916 + L1MC4 LINE L1 7172 7907 -135 186 133 0 0 chrX 1823233 1823263 -175150877 + (GA)n Simple_repeat Simple_repeat 2 31 0 391 206 0 11 chrX 1823301 1823393 -175150747 + L1MC4 LINE L1 7935 8025 -17 2400 130 30 25 chrX 1823554 1823916 -175150224 - THE1B LTR MaLR 0 364 1 736 174 0 43 chrX 1824042 1824180 -175149960 + FLAM_C SINE Alu 3 134 -9 551 15 15 0 chrX 1824216 1824284 -175149856 + (TG)n Simple_repeat Simple_repeat 2 70 0 2007 99 70 0 chrX 1824295 1824568 -175149572 - AluSp SINE Alu -21 292 1 949 264 55 42 chrX 1825140 1825519 -175148621 - MLT1B LTR MaLR -6 384 1 227 186 43 0 chrX 1826133 1826203 -175147937 + (TA)n Simple_repeat Simple_repeat 2 74 0 294 211 51 23 chrX 1826266 1826441 -175147699 + (TA)n Simple_repeat Simple_repeat 1 180 0 382 170 33 55 chrX 1826795 1826977 -175147163 + (TATAA)n Simple_repeat Simple_repeat 1 178 0 22 80 0 0 chrX 1827081 1827131 -175147009 + AT_rich Low_complexity Low_complexity 1 50 0 823 178 0 0 chrX 1827163 1827292 -175146848 - FRAM SINE Alu -25 151 23 22 35 0 0 chrX 1827329 1827358 -175146782 + AT_rich Low_complexity Low_complexity 1 29 0 226 235 41 24 chrX 1827367 1827537 -175146603 + (TA)n Simple_repeat Simple_repeat 1 173 0 195 259 121 35 chrX 1828135 1828251 -175145889 + MIR SINE MIR 136 261 -1 356 121 4 0 chrX 1828271 1828391 -175145749 + MADE1 DNA Mariner 1 80 0 4275 141 38 0 chrX 1828398 1829056 -175145084 + L1PA16 LINE L1 5476 6158 -8 2245 69 24 0 chrX 1829137 1829425 -175144715 - AluY SINE Alu -16 295 1 315 96 0 0 chrX 1830084 1830136 -175144004 + (TATG)n Simple_repeat Simple_repeat 1 52 0 643 118 57 10 chrX 1830136 1830545 -175143595 + (TCTA)n Simple_repeat Simple_repeat 1 428 0 200 259 0 17 chrX 1830576 1830634 -175143506 + (CA)n Simple_repeat Simple_repeat 2 58 0 24 53 0 0 chrX 1830661 1830699 -175143441 + AT_rich Low_complexity Low_complexity 1 38 0 1879 107 4 32 chrX 1831078 1831101 -175143039 + L1PA16 LINE L1 5665 5687 -479 1805 193 0 0 chrX 1831101 1831396 -175142744 + AluJb SINE Alu 1 295 -17 1879 107 4 32 chrX 1831396 1831652 -175142488 + L1PA16 LINE L1 5687 5936 -230 1765 143 7 33 chrX 1831652 1831925 -175142215 - AluJo SINE Alu -46 266 1 290 214 11 34 chrX 1832051 1832140 -175142000 + L1MA9 LINE L1 6196 6282 -30 1375 184 4 0 chrX 1832156 1832390 -175141750 + L1PA16 LINE L1 5923 6157 -9 2862 176 94 25 chrX 1833026 1833451 -175140689 + LTR26 LTR ERV1 1 476 -127 2034 136 7 0 chrX 1833451 1833746 -175140394 + AluSq SINE Alu 1 297 -16 2862 176 94 25 chrX 1833746 1833884 -175140256 + LTR26 LTR ERV1 476 603 0 22 56 0 0 chrX 1834301 1834337 -175139803 + AT_rich Low_complexity Low_complexity 1 36 0 802 197 185 31 chrX 1834346 1834642 -175139498 + MLT1C LTR MaLR 1 361 -144 962 211 88 53 chrX 1834652 1834993 -175139147 + MLT1C LTR MaLR 1 353 -114 22 0 0 0 chrX 1834996 1835018 -175139122 + AT_rich Low_complexity Low_complexity 1 22 0 1089 206 11 35 chrX 1835064 1835477 -175138663 + MLT1D LTR MaLR 2 466 -39 1688 202 3 3 chrX 1835477 1835774 -175138366 - AluJb SINE Alu -15 297 1 1089 206 11 35 chrX 1835774 1835814 -175138326 + MLT1D LTR MaLR 466 505 0 1351 101 291 0 chrX 1836277 1836504 -175137636 - AluSx SINE Alu -9 293 1 198 71 0 0 chrX 1836934 1836962 -175137178 + (TA)n Simple_repeat Simple_repeat 2 29 0 221 89 36 36 chrX 1836990 1837046 -175137094 + (TA)n Simple_repeat Simple_repeat 2 57 0 655 218 12 98 chrX 1837336 1837580 -175136560 - L1MA4 LINE L1 -2 6298 6077 339 170 9 27 chrX 1838534 1838646 -175135494 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 644 126 30 18 chrX 1838658 1838825 -175135315 + (TAGA)n Simple_repeat Simple_repeat 4 172 0 334 297 21 11 chrX 1838858 1839165 -175134975 + (TGGA)n Simple_repeat Simple_repeat 1 310 0 671 132 17 35 chrX 1839167 1839341 -175134799 + (TAGA)n Simple_repeat Simple_repeat 1 171 0 310 298 16 8 chrX 1839363 1839484 -175134656 + (TGGA)n Simple_repeat Simple_repeat 3 124 0 209 194 0 0 chrX 1839516 1839579 -175134561 + (TATG)n Simple_repeat Simple_repeat 1 63 0 545 219 24 0 chrX 1839642 1839938 -175134202 + (TAGA)n Simple_repeat Simple_repeat 1 303 0 205 217 57 38 chrX 1839938 1840044 -175134096 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 2081 143 0 10 chrX 1840664 1840972 -175133168 + AluSx SINE Alu 1 305 -7 1217 161 21 0 chrX 1840981 1841174 -175132966 - AluJo SINE Alu -110 202 6 2107 146 14 6 chrX 1841459 1841808 -175132332 + MLT1A1 LTR MaLR 12 363 -2 1494 114 0 0 chrX 1841815 1842008 -175132132 - AluSc SINE Alu -16 293 101 495 113 0 0 chrX 1842008 1842070 -175132070 - AluSc SINE Alu -246 63 2 1950 148 3 10 chrX 1842276 1842586 -175131554 - AluSx SINE Alu 0 312 5 2167 236 33 9 chrX 1842606 1842624 -175131516 + L1MB5 LINE L1 5599 5615 -559 2278 104 7 0 chrX 1842624 1842923 -175131217 + AluSp SINE Alu 1 301 -12 2167 236 33 9 chrX 1842923 1843465 -175130675 + L1MB5 LINE L1 5615 6142 -32 2009 158 0 0 chrX 1843465 1843776 -175130364 + AluJb SINE Alu 1 311 -1 1466 219 29 0 chrX 1843783 1844061 -175130079 + AluJo SINE Alu 1 286 -26 1809 128 4 0 chrX 1844161 1844419 -175129721 + AluSx SINE Alu 1 259 -53 2164 106 7 3 chrX 1844561 1844854 -175129286 - AluSx SINE Alu -18 294 1 1667 181 23 13 chrX 1845139 1845448 -175128692 - AluJo SINE Alu 0 312 1 266 300 33 0 chrX 1845665 1845755 -175128385 + GA-rich Low_complexity Low_complexity 2 94 0 409 239 6 6 chrX 1845775 1845951 -175128189 + GA-rich Low_complexity Low_complexity 1 176 0 598 186 6 6 chrX 1845968 1846129 -175128011 + GA-rich Low_complexity Low_complexity 2 162 0 366 244 0 0 chrX 1846142 1846277 -175127863 + GA-rich Low_complexity Low_complexity 2 136 0 1432 183 4 18 chrX 2046286 2046559 -174927581 + LTR2B LTR ERV1 222 490 0 909 117 114 80 chrX 2046559 2046823 -174927317 + LTR1B LTR ERV1 496 784 -1 681 227 8 0 chrX 2046864 2046996 -174927144 + MER21B LTR ERV1 279 411 -452 2999 136 54 24 chrX 2047002 2047586 -174926554 - MER4B LTR ERV1 -6 773 5 2582 143 14 24 chrX 2047592 2048013 -174926127 + MER21A LTR ERV1 506 922 -9 929 193 53 0 chrX 2048023 2048210 -174925930 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 2049183 2049355 -174924785 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1713 160 0 7 chrX 2049356 2049631 -174924509 - AluJo SINE Alu -38 274 2 2274 106 0 0 chrX 2049805 2050107 -174924033 - AluY SINE Alu -9 302 1 2500 134 7 36 chrX 2050127 2050545 -174923595 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 2050940 2050975 -174923165 + (T)n Simple_repeat Simple_repeat 1 35 0 1871 181 0 6 chrX 2050992 2051306 -174922834 + AluJb SINE Alu 1 312 0 1038 113 0 0 chrX 2051879 2052012 -174922128 - AluSq/x SINE Alu -179 133 1 12097 110 24 4 chrX 2052080 2052469 -174921671 + L1P3 LINE L1 10 390 -6061 198 71 0 0 chrX 2052469 2052497 -174921643 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 12097 110 24 4 chrX 2052497 2053868 -174920272 + L1P3 LINE L1 390 1785 -4666 291 185 33 0 chrX 2053870 2053962 -174920178 + GA-rich Low_complexity Low_complexity 2 96 0 2226 102 0 3 chrX 2054924 2055209 -174918931 + AluSx SINE Alu 1 284 -28 512 179 18 30 chrX 2055343 2055467 -174918673 + MLT1C LTR MaLR 1 108 -359 1308 158 48 9 chrX 2055467 2055695 -174918445 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 2055869 2055912 -174918228 + AT_rich Low_complexity Low_complexity 1 43 0 734 152 9 0 chrX 2056045 2056157 -174917983 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 2056713 2056734 -174917406 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1662 175 3 27 chrX 2056860 2057157 -174916983 + AluJo SINE Alu 1 290 -22 1193 230 36 48 chrX 2057436 2057792 -174916348 - L1MD2 LINE L1 0 6359 6008 1944 163 3 0 chrX 2057994 2058289 -174915851 - AluJo SINE Alu -16 296 1 1608 191 75 9 chrX 2058545 2058864 -174915276 + MER2 DNA MER2_type 4 343 -1 5140 60 0 6 chrX 2059101 2059740 -174914400 - L1PA8 LINE L1 -12 6160 5526 1857 107 10 10 chrX 2060611 2060900 -174913240 + L1PA13 LINE L1 5873 6161 -2 326 205 51 13 chrX 2060947 2061025 -174913115 - MLT1E1 LTR MaLR -492 162 82 597 105 42 0 chrX 2062868 2062963 -174911177 - L1MA10 LINE L1 0 6334 6236 1501 70 0 10 chrX 2062978 2063177 -174910963 - LTR43 LTR ERV1 -8 594 398 1440 122 9 5 chrX 2063203 2063417 -174910723 - THE1A LTR MaLR -55 300 86 1654 179 24 157 chrX 2063919 2064310 -174909830 + L1MB3 LINE L1 3882 4323 -1823 1856 120 0 39 chrX 2064310 2064594 -174909546 + AluSx SINE Alu 1 273 -39 1654 179 24 157 chrX 2064594 2064695 -174909445 + L1MB3 LINE L1 4323 4285 -1861 1940 137 46 0 chrX 2064695 2064980 -174909160 + AluSx SINE Alu 1 298 -14 1654 179 24 157 chrX 2064980 2065079 -174909061 + L1MB3 LINE L1 4284 4395 -1751 * 2726 158 30 81 chrX 2065050 2065659 -174908481 + L1MB3 LINE L1 5602 6179 -4 1569 142 103 36 chrX 2066105 2066186 -174907954 + MSTA LTR MaLR 98 172 -256 2558 53 3 0 chrX 2066186 2066488 -174907652 + AluY SINE Alu 2 304 -7 1569 142 103 36 chrX 2066488 2066708 -174907432 + MSTA LTR MaLR 172 419 -9 388 211 12 170 chrX 2067767 2067803 -174906337 + MER112 DNA MER1_type 8 48 -212 2325 94 0 0 chrX 2067803 2068100 -174906040 + AluSx SINE Alu 1 297 -15 2126 104 30 7 chrX 2068101 2068398 -174905742 + AluSx SINE Alu 1 304 -8 388 211 12 170 chrX 2068398 2068542 -174905598 + MER112 DNA MER1_type 48 144 -116 2258 99 7 7 chrX 2068542 2068845 -174905295 - AluSx SINE Alu -3 309 7 388 211 12 170 chrX 2068845 2068908 -174905232 + MER112 DNA MER1_type 144 215 -45 2304 106 3 0 chrX 2069581 2069883 -174904257 - AluSx SINE Alu -9 303 1 1532 145 9 112 chrX 2070549 2070880 -174903260 - AluJb SINE Alu -14 298 2 275 0 29 0 chrX 2071227 2071261 -174902879 - MADE1 DNA Mariner -45 35 1 1426 244 97 30 chrX 2072257 2072752 -174901388 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 2073236 2073265 -174900875 + AT_rich Low_complexity Low_complexity 1 29 0 2110 138 0 0 chrX 2073307 2073605 -174900535 - AluSx SINE Alu -3 309 12 1901 155 0 29 chrX 2074352 2074662 -174899478 + AluJo SINE Alu 1 301 -11 2432 43 4 0 chrX 2074711 2075010 -174899130 - AluY SINE Alu 0 300 1 1666 162 49 0 chrX 2075389 2075508 -174898632 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 2075508 2075546 -174898594 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1666 162 49 0 chrX 2075546 2075710 -174898430 + AluJo SINE Alu 113 298 -14 1729 162 7 34 chrX 2076614 2076911 -174897229 - AluJo SINE Alu -23 289 1 1802 182 0 10 chrX 2077301 2077614 -174896526 - AluJo SINE Alu 0 312 3 2075 143 10 0 chrX 2078234 2078541 -174895599 + AluSx SINE Alu 1 310 -2 1985 177 32 0 chrX 2078574 2078946 -174895194 + L1PB4 LINE L1 5766 6149 -7 22 0 0 0 chrX 2079154 2079176 -174894964 + GC_rich Low_complexity Low_complexity 1 22 0 79 55 0 0 chrX 2079195 2079323 -174894817 + GC_rich Low_complexity Low_complexity 1 128 0 140 71 0 0 chrX 2079368 2079648 -174894492 + GC_rich Low_complexity Low_complexity 1 280 0 206 163 20 0 chrX 2079665 2079714 -174894426 + C-rich Low_complexity Low_complexity 4 53 0 519 194 0 36 chrX 2079834 2079999 -174894141 + GA-rich Low_complexity Low_complexity 1 159 0 249 273 13 26 chrX 2079999 2080076 -174894064 + A-rich Low_complexity Low_complexity 1 76 0 529 292 0 0 chrX 2080159 2080289 -174893851 - MER77 LTR ERV1 0 605 476 984 176 64 5 chrX 2080292 2080496 -174893644 - L1M2 LINE L1 -725 5587 5372 276 138 62 75 chrX 2080498 2080535 -174893605 + L1MA9 LINE L1 6234 6270 -42 1675 159 0 15 chrX 2080535 2080799 -174893341 + AluJb SINE Alu 35 294 -18 276 138 62 75 chrX 2080799 2080841 -174893299 + L1MA9 LINE L1 6270 6312 0 1443 261 55 60 chrX 2080920 2081407 -174892733 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 2082525 2082554 -174891586 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2426 118 8 30 chrX 2082600 2082972 -174891168 - THE1B LTR MaLR 0 364 1 1892 169 0 10 chrX 2083068 2083382 -174890758 + AluJb SINE Alu 1 311 -1 808 225 89 65 chrX 2083551 2083957 -174890183 - MLT1C LTR MaLR -6 587 45 278 266 32 13 chrX 2084858 2085016 -174889124 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 2084972 2085079 -174889061 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 2085079 2085211 -174888929 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 255 178 23 85 chrX 2085258 2085387 -174888753 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 2085604 2085633 -174888507 + AT_rich Low_complexity Low_complexity 1 29 0 2185 109 46 57 chrX 2087489 2087856 -174886284 + THE1B LTR MaLR 1 363 -1 201 154 0 0 chrX 2087863 2087902 -174886238 + (CAA)n Simple_repeat Simple_repeat 1 39 0 10879 21 1 0 chrX 2088115 2090068 -174884072 - L1PA2 LINE L1 -60 6095 4142 19545 190 4 13 chrX 2090068 2095961 -174878179 + HERVE LTR ERV1 814 6668 -1145 272 301 194 25 chrX 2096849 2097045 -174877095 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 2098168 2098234 -174875906 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 2098443 2098857 -174875283 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 2098921 2099096 -174875044 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 2099301 2099668 -174874472 + L1ME3 LINE L1 5793 6154 -8 312 309 77 17 chrX 2099831 2100012 -174874128 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 2101313 2101403 -174872737 + GA-rich Low_complexity Low_complexity 1 94 0 2163 177 60 20 chrX 2102230 2102681 -174871459 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 2102684 2102838 -174871302 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 491 232 64 8 chrX 2103614 2103739 -174870401 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 2103821 2104017 -174870123 + MER107 DNA MER1_type 1 196 -1 2136 135 0 0 chrX 2104368 2104680 -174869460 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 2105394 2105793 -174868347 - HERV16 LTR ERVL -896 4868 4446 1599 236 115 61 chrX 2106360 2106952 -174867188 + MLT1E3 LTR MaLR 1 624 0 1838 174 127 16 chrX 2107994 2108379 -174865761 - MSTA LTR MaLR 0 428 1 742 293 91 80 chrX 2109091 2110037 -174864103 + L1M4 LINE L1 2177 3140 -3006 1660 132 33 7 chrX 2110037 2110310 -174863830 + L1PA16 LINE L1 5882 6161 -5 742 293 91 80 chrX 2110310 2110492 -174863648 + L1M4 LINE L1 3140 3318 -2828 1635 161 14 27 chrX 2111173 2111465 -174862675 - AluJb SINE Alu -24 288 1 316 316 28 12 chrX 2111469 2111612 -174862528 - MIR SINE MIR -105 103 12 766 59 0 2 chrX 2111624 2111880 -174862260 - AluY SINE Alu -10 301 1 660 102 0 0 chrX 2111946 2112044 -174862096 + (TG)n Simple_repeat Simple_repeat 2 99 0 1841 144 0 4 chrX 2112581 2112852 -174861288 + AluJo SINE Alu 11 280 -32 369 0 0 0 chrX 2112853 2112894 -174861246 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2674 103 15 2 chrX 2113161 2113569 -174860571 - L1PA13 LINE L1 -19 6144 5732 1931 152 0 33 chrX 2114125 2114428 -174859712 - AluJb SINE Alu -19 293 1 608 219 29 136 chrX 2114568 2114888 -174859252 - MLT1E1 LTR MaLR -242 407 102 487 181 8 24 chrX 2114888 2115015 -174859125 + L1PA13 LINE L1 5750 5874 -289 763 207 101 48 chrX 2116139 2116347 -174857793 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 2116703 2116753 -174857387 + (TG)n Simple_repeat Simple_repeat 2 51 0 569 322 93 34 chrX 2116936 2117473 -174856667 - HERV16 LTR ERVL -2377 3277 2709 528 323 85 26 chrX 2117772 2118162 -174855978 - HERV16 LTR ERVL -4223 773 361 622 310 24 0 chrX 2118466 2118679 -174855461 - HERV16 LTR ERVL -3814 1182 965 4373 141 35 16 chrX 2118835 2119644 -174854496 + L1PB4 LINE L1 5330 6153 -3 1959 157 20 3 chrX 2119883 2120234 -174853906 + L1MB3 LINE L1 5817 6173 -10 194 0 0 37 chrX 2121988 2122015 -174852125 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 2122713 2122746 -174851394 + AT_rich Low_complexity Low_complexity 1 33 0 1070 114 35 0 chrX 2122882 2123084 -174851056 + MER39B LTR ERV1 1 209 -444 350 280 68 41 chrX 2123278 2123571 -174850569 + L1ME3A LINE L1 5331 5631 -533 663 263 51 2 chrX 2123599 2123852 -174850288 + L1ME3A LINE L1 5694 5957 -207 21 0 0 0 chrX 2123963 2123984 -174850156 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 2124056 2124114 -174850026 + GA-rich Low_complexity Low_complexity 1 58 0 237 262 98 0 chrX 2124397 2124458 -174849682 + L2 LINE L2 3230 3296 -17 998 68 28 11 chrX 2126911 2127087 -174847053 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 2127131 2127356 -174846784 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 2127374 2127527 -174846613 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 2127593 2127684 -174846456 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 342 161 129 21 chrX 2128366 2128459 -174845681 + L1M3 LINE L1 5653 5755 -428 1968 149 0 3 chrX 2129215 2129517 -174844623 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 2129697 2129779 -174844361 + MLT1I LTR MaLR 318 402 -7 2418 46 3 13 chrX 2129873 2130177 -174843963 + AluY SINE Alu 1 301 -10 279 0 0 0 chrX 2130283 2130314 -174843826 + (CA)n Simple_repeat Simple_repeat 2 32 0 677 143 134 0 chrX 2130580 2130699 -174843441 - AluJb SINE Alu -177 135 1 3731 106 12 9 chrX 2131292 2131856 -174842284 + L1PA16 LINE L1 5592 6157 -9 1425 234 73 15 chrX 2131892 2132423 -174841717 - MER39B LTR ERV1 0 653 92 2590 121 8 7 chrX 2132645 2133193 -174840947 + MER4E LTR ERV1 227 766 0 338 113 0 48 chrX 2133196 2133258 -174840882 - L1MB1 LINE L1 -26 6163 6105 690 165 181 6 chrX 2133281 2133463 -174840677 + MER21A LTR ERV1 6 219 -712 2646 147 45 8 chrX 2133464 2133945 -174840195 + LTR1B LTR ERV1 1 499 -327 1456 183 25 28 chrX 2133945 2134387 -174839753 + LTR2B LTR ERV1 1 490 0 2624 78 0 0 chrX 2134387 2134744 -174839396 + Harlequin LTR ERV1 1 357 -6539 625 24 0 0 chrX 2134744 2134826 -174839314 - L1PA2 LINE L1 0 6155 6074 748 89 48 8 chrX 2134826 2134950 -174839190 - AluY SINE Alu -92 219 91 1518 171 66 21 chrX 2135321 2135608 -174838532 - AluJo SINE Alu -9 303 4 684 93 0 0 chrX 2136446 2136543 -174837597 + (GAAA)n Simple_repeat Simple_repeat 1 97 0 2157 251 93 35 chrX 2136543 2136714 -174837426 + L1ME LINE L1 4151 4311 -1853 2420 74 0 3 chrX 2136714 2137013 -174837127 + AluY SINE Alu 1 298 -13 2157 251 93 35 chrX 2137013 2137720 -174836420 + L1ME LINE L1 4311 4976 -1188 1453 120 0 74 chrX 2137720 2137962 -174836178 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 2137962 2137997 -174836143 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 2157 251 93 35 chrX 2137997 2138505 -174835635 + L1ME LINE L1 4975 5609 -555 21 0 0 0 chrX 2138605 2138626 -174835514 + AT_rich Low_complexity Low_complexity 1 21 0 2293 103 6 0 chrX 2139149 2139460 -174834680 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 2139496 2139522 -174834618 + AT_rich Low_complexity Low_complexity 1 26 0 511 198 21 80 chrX 2139526 2139705 -174834435 + L1MB5 LINE L1 6014 6183 -1 268 326 6 22 chrX 2140372 2140553 -174833587 + (CA)n Simple_repeat Simple_repeat 1 178 0 378 301 3 34 chrX 2140571 2140907 -174833233 + (CA)n Simple_repeat Simple_repeat 1 325 0 426 302 0 12 chrX 2141037 2141206 -174832934 + (CA)n Simple_repeat Simple_repeat 1 167 0 1272 235 62 75 chrX 2141700 2142138 -174832002 - MER67D LTR ERV1 -8 506 75 1352 152 14 48 chrX 2142140 2142340 -174831800 + L1MA4 LINE L1 5847 6035 -265 1689 158 4 11 chrX 2142340 2142606 -174831534 - AluJo SINE Alu -1 311 48 1352 152 14 48 chrX 2142606 2142694 -174831446 + L1MA4 LINE L1 6035 6125 -175 1787 145 8 0 chrX 2142702 2142964 -174831176 - AluJb SINE Alu -1 311 48 4209 33 17 0 chrX 2142964 2143444 -174830696 - LTR2B LTR ERV1 -2 488 1 406 58 0 0 chrX 2143445 2143497 -174830643 - AluJb SINE Alu -261 52 1 2072 118 13 54 chrX 2144251 2144566 -174829574 - AluSx SINE Alu -10 302 1 2073 141 3 3 chrX 2144800 2145104 -174829036 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 2145420 2145588 -174828552 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 2145627 2145728 -174828412 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 197 274 27 27 chrX 2145942 2146015 -174828125 + L3 LINE CR1 1504 1576 -1 3365 177 44 6 chrX 2146695 2147333 -174826807 + L1PB4 LINE L1 5482 6143 -13 1686 167 11 28 chrX 2147879 2148166 -174825974 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 2148169 2148213 -174825927 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1135 253 63 38 chrX 2148486 2148913 -174825227 - MLT1C LTR MaLR -9 458 21 1879 161 0 40 chrX 2149010 2149334 -174824806 + AluJo SINE Alu 1 311 -1 234 240 82 96 chrX 2150122 2150180 -174823960 - MLT1J2 LTR MaLR -2 448 391 2695 55 0 3 chrX 2150180 2150492 -174823648 - AluY SINE Alu 0 311 1 234 240 82 96 chrX 2150492 2150641 -174823499 - MLT1J2 LTR MaLR -59 391 244 1368 140 18 0 chrX 2150691 2150912 -174823228 - MLT1B LTR MaLR -8 382 158 466 176 0 22 chrX 2150912 2151003 -174823137 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 2151023 2151308 -174822832 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4055 176 21 4 chrX 2151309 2152030 -174822110 - L1MB3 LINE L1 -8 6175 5443 2005 140 33 7 chrX 2152244 2152544 -174821596 - AluSx SINE Alu -4 308 1 1317 81 0 51 chrX 2152553 2152697 -174821443 + L1MA1 LINE L1 6116 6249 -53 2021 161 0 0 chrX 2152697 2152996 -174821144 + AluSx SINE Alu 1 299 -13 1317 81 0 51 chrX 2152996 2153048 -174821092 + L1MA1 LINE L1 6249 6302 0 24 0 0 0 chrX 2153048 2153072 -174821068 + AT_rich Low_complexity Low_complexity 1 24 0 397 268 14 49 chrX 2153768 2153910 -174820230 - MLT1C LTR MaLR -1 466 330 1551 137 0 0 chrX 2153910 2154161 -174819979 + AluSg/x SINE Alu 86 336 0 396 209 14 119 chrX 2154342 2154467 -174819673 - MER53 DNA DNA -1 188 92 1957 152 10 3 chrX 2154467 2154776 -174819364 + AluJb SINE Alu 1 311 -1 396 209 14 119 chrX 2154776 2154860 -174819280 - MER53 DNA DNA -97 92 1 197 339 51 0 chrX 2155272 2155331 -174818809 + L3 LINE CR1 132 193 -1384 233 270 10 0 chrX 2155433 2155533 -174818607 - HAL1 LINE L1 -124 2383 2283 2208 117 10 7 chrX 2155595 2155903 -174818237 + AluSq SINE Alu 1 309 -4 368 266 78 8 chrX 2155906 2156034 -174818106 + MER87 LTR ERV1 13 149 -392 1756 146 0 8 chrX 2156050 2156340 -174817800 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 2156366 2156390 -174817750 + (GA)n Simple_repeat Simple_repeat 2 25 0 831 248 89 65 chrX 2156514 2157003 -174817137 + LTR8A LTR ERV1 116 727 0 471 276 100 69 chrX 2157015 2157205 -174816935 - HAL1 LINE L1 -273 2234 2051 921 149 37 50 chrX 2157205 2157366 -174816774 - FRAM SINE Alu -7 159 1 471 276 100 69 chrX 2157366 2157714 -174816426 - HAL1 LINE L1 -456 2051 1679 2495 102 9 80 chrX 2157714 2158164 -174815976 - MER4E LTR ERV1 0 766 349 21 0 0 0 chrX 2158517 2158538 -174815602 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 2158657 2158678 -174815462 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 2158827 2158849 -174815291 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 2159039 2159060 -174815080 + GC_rich Low_complexity Low_complexity 1 21 0 303 122 0 0 chrX 2160128 2160177 -174813963 + (TC)n Simple_repeat Simple_repeat 2 50 0 2486 91 8 36 chrX 2160198 2160263 -174813877 - THE1A LTR MaLR 0 355 290 2263 104 0 3 chrX 2160263 2160560 -174813580 - AluSx SINE Alu -16 296 1 2486 91 8 36 chrX 2160560 2160857 -174813283 - THE1A LTR MaLR -65 290 3 10957 101 43 2 chrX 2160859 2162377 -174811763 - THE1A-int LTR MaLR 0 1580 1 2412 120 11 0 chrX 2162377 2162728 -174811412 - THE1A LTR MaLR 0 355 1 229 186 0 0 chrX 2162916 2162959 -174811181 - Alu SINE Alu -255 44 2 417 151 0 0 chrX 2163483 2163556 -174810584 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 538 107 0 0 chrX 2163897 2163972 -174810168 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 230 300 80 10 chrX 2164413 2164513 -174809627 - L2 LINE L2 -4 3309 3203 1921 143 0 53 chrX 2165280 2165601 -174808539 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 2165847 2165878 -174808262 + L2 LINE L2 3231 3261 -11 286 283 43 58 chrX 2166266 2166404 -174807736 + MER5A DNA MER1_type 49 184 -5 250 146 21 0 chrX 2166496 2166544 -174807596 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 2167534 2167570 -174806570 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 205 155 87 41 chrX 2167884 2167933 -174806207 + MIR SINE MIR 68 119 -89 199 288 0 15 chrX 2167972 2168038 -174806102 - L2 LINE L2 -13 3259 3195 245 339 37 18 chrX 2168492 2168601 -174805539 - L2 LINE L2 -208 3064 2954 190 299 93 10 chrX 2168965 2169062 -174805078 - MER5A DNA MER1_type -11 178 74 1188 173 31 126 chrX 2169309 2169487 -174804653 - AluJo SINE Alu -8 304 168 1815 146 7 0 chrX 2169487 2169761 -174804379 + AluSx SINE Alu 1 276 -36 1188 173 31 126 chrX 2169761 2169900 -174804240 - AluJo SINE Alu -144 168 17 569 196 227 6 chrX 2170232 2170395 -174803745 + MER20 DNA MER1_type 2 200 -19 285 211 0 211 chrX 2170460 2170593 -174803547 + L2 LINE L2 3202 3306 -7 319 266 49 28 chrX 2170622 2170765 -174803375 - L1MC/D LINE L1 -2080 5728 5583 2310 124 0 0 chrX 2170797 2171103 -174803037 + AluSx SINE Alu 1 306 -6 441 272 178 47 chrX 2171114 2171412 -174802728 + L1ME3A LINE L1 5632 5968 -202 335 219 12 170 chrX 2171684 2171747 -174802393 - MER112 DNA MER1_type -45 215 144 2306 103 7 0 chrX 2171747 2172049 -174802091 + AluSx SINE Alu 7 310 -2 335 219 12 170 chrX 2172049 2172193 -174801947 - MER112 DNA MER1_type -116 144 -21 2150 104 30 7 chrX 2172193 2172490 -174801650 - AluSx SINE Alu -8 304 1 2345 94 0 0 chrX 2172491 2172788 -174801352 - AluSx SINE Alu -15 297 1 335 219 12 170 chrX 2172788 2172824 -174801316 - MER112 DNA MER1_type -212 48 8 1486 148 100 35 chrX 2173877 2174105 -174800035 - MSTA LTR MaLR -1 427 172 2569 53 3 0 chrX 2174105 2174407 -174799733 - AluY SINE Alu -7 304 2 1486 148 100 35 chrX 2174407 2174488 -174799652 - MSTA LTR MaLR -256 172 98 2578 163 28 79 chrX 2174933 2175542 -174798598 - L1MB3 LINE L1 -4 6179 5602 1689 180 28 71 chrX 2175519 2175612 -174798528 - L1MB3 LINE L1 -1755 4391 4296 * 1968 137 46 0 chrX 2175612 2175897 -174798243 - AluSx SINE Alu -14 298 1 1689 180 28 71 chrX 2175897 2175944 -174798196 - L1MB3 LINE L1 -1850 4296 4249 1895 115 0 95 chrX 2175944 2176282 -174797858 - AluSx SINE Alu -6 306 1 1689 180 28 71 chrX 2176282 2176673 -174797467 - L1MB3 LINE L1 -1897 4249 3882 1863 157 43 4 chrX 2177328 2177608 -174796532 + AluSx SINE Alu 1 291 -21 2256 97 0 19 chrX 2177714 2178022 -174796118 + AluY SINE Alu 1 302 -9 804 261 0 0 chrX 2178132 2178297 -174795843 - AluJb SINE Alu -11 301 137 2190 104 3 14 chrX 2178430 2178727 -174795413 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 2178895 2179220 -174794920 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 2179472 2179648 -174794492 + (CA)n Simple_repeat Simple_repeat 1 171 0 1453 229 65 86 chrX 2180121 2180567 -174793573 - MER67D LTR ERV1 0 514 79 1995 169 40 33 chrX 2180567 2180756 -174793384 + L1MA4 LINE L1 5847 6033 -267 1721 157 0 0 chrX 2180756 2181005 -174793135 - AluJo SINE Alu -16 296 48 1995 169 40 33 chrX 2181005 2181265 -174792875 + L1MA4 LINE L1 6033 6299 -1 1453 229 65 86 chrX 2181265 2181343 -174792797 - MER67D LTR ERV1 -435 79 1 2391 109 34 14 chrX 2181383 2181740 -174792400 + THE1B LTR MaLR 1 364 0 465 137 0 0 chrX 2181791 2181864 -174792276 - AluJo SINE Alu -6 306 234 1183 160 48 0 chrX 2182247 2182434 -174791706 - AluJo SINE Alu -69 243 48 2182 117 7 23 chrX 2182661 2182970 -174791170 - AluSx SINE Alu -8 304 1 1884 127 67 11 chrX 2183195 2183479 -174790661 + AluSx SINE Alu 3 302 -10 315 128 51 26 chrX 2183726 2183843 -174790297 + (TCTA)n Simple_repeat Simple_repeat 1 120 0 3178 169 50 13 chrX 2183874 2184496 -174789644 + L1PB4 LINE L1 5499 6143 -13 1323 201 18 25 chrX 2185038 2185322 -174788818 + AluJo SINE Alu 7 288 -24 273 235 25 12 chrX 2185613 2185694 -174788446 - MLT1C LTR MaLR -4 463 382 2390 57 0 0 chrX 2186531 2186829 -174787311 - AluY SINE Alu -13 298 1 692 92 20 0 chrX 2187663 2187761 -174786379 + FLAM_C SINE Alu 23 122 -21 2298 81 3 0 chrX 2187769 2188076 -174786064 - AluSx SINE Alu -4 308 1 1478 194 7 0 chrX 2188096 2188380 -174785760 + AluJo SINE Alu 3 288 -24 757 71 50 0 chrX 2188984 2189083 -174785057 - AluSq/x SINE Alu -205 108 5 1339 158 41 15 chrX 2189099 2189365 -174784775 + L1MA8 LINE L1 6017 6289 -2 2207 109 0 0 chrX 2189375 2189677 -174784463 + AluSx SINE Alu 1 302 -10 1582 138 30 0 chrX 2189707 2189976 -174784164 - L1MA5A LINE L1 0 6297 6021 1717 147 97 27 chrX 2190314 2190597 -174783543 + MLT1A1 LTR MaLR 1 314 -51 1576 83 12 51 chrX 2190597 2190850 -174783290 + MER75B DNA T2_type 1 243 0 1717 147 97 27 chrX 2190850 2190906 -174783234 + MLT1A1 LTR MaLR 314 365 0 1072 151 0 0 chrX 2191027 2191199 -174782941 - AluSq SINE Alu 0 313 142 1051 184 71 21 chrX 2191358 2191597 -174782543 - AluJb SINE Alu -59 253 3 1321 172 78 54 chrX 2191771 2192067 -174782073 - AluJo SINE Alu -9 303 1 1215 176 9 0 chrX 2192162 2192372 -174781768 - L1PA16 LINE L1 -9 6157 5946 204 209 0 47 chrX 2193143 2193229 -174780911 + (TTTG)n Simple_repeat Simple_repeat 2 83 0 * 221 134 60 45 chrX 2193169 2193236 -174780904 + (GTTTG)n Simple_repeat Simple_repeat 2 69 0 3685 131 23 29 chrX 2193405 2193482 -174780658 - L1PA16 LINE L1 -24 6142 6066 2001 186 41 117 chrX 2193482 2194142 -174779998 - LTR9 LTR ERV1 0 612 3 3685 131 23 29 chrX 2194142 2194382 -174779758 - L1PA16 LINE L1 -100 6066 5166 609 279 59 50 chrX 2194382 2194657 -174779483 - L1MD3 LINE L1 -2169 5826 5546 2625 74 148 3 chrX 2194657 2195048 -174779092 + LTR7 LTR ERV1 1 448 -2 609 279 59 50 chrX 2195048 2195130 -174779010 - L1MD3 LINE L1 -2449 5546 5466 549 61 0 49 chrX 2195436 2195487 -174778653 - MADE1 DNA Mariner -1 79 27 1799 153 0 0 chrX 2195487 2195768 -174778372 + AluSx SINE Alu 1 281 -31 243 0 0 0 chrX 2195769 2195796 -174778344 + (CA)n Simple_repeat Simple_repeat 2 28 0 549 61 0 49 chrX 2195796 2195824 -174778316 - MADE1 DNA Mariner -52 28 2 374 120 0 0 chrX 2196801 2196851 -174777289 + Alu SINE Alu 1 50 -250 352 120 0 0 chrX 2196886 2196936 -174777204 + Alu SINE Alu 1 50 -250 1617 99 0 5 chrX 2196971 2197194 -174776946 + AluSq SINE Alu 1 222 -91 218 146 42 0 chrX 2197208 2197256 -174776884 + G-rich Low_complexity Low_complexity 2 51 0 1230 109 6 0 chrX 2197422 2197596 -174776544 + AluSg/x SINE Alu 122 296 -16 1366 212 7 0 chrX 2197698 2197986 -174776154 - AluJo SINE Alu -22 290 1 1801 216 49 28 chrX 2198065 2198100 -174776040 - L1MB5 LINE L1 -8 6166 6133 2143 125 0 0 chrX 2198100 2198411 -174775729 - AluSx SINE Alu 0 312 2 1801 216 49 28 chrX 2198411 2198805 -174775335 - L1MB5 LINE L1 -41 6133 5728 329 54 0 0 chrX 2199291 2199393 -174774747 - Alu SINE Alu 0 325 234 270 204 0 56 chrX 2199391 2199437 -174774703 - AluSg/x SINE Alu -123 177 133 * 1934 160 0 0 chrX 2199437 2199744 -174774396 - AluSx SINE Alu -5 307 1 24 32 0 0 chrX 2199751 2199782 -174774358 + AT_rich Low_complexity Low_complexity 1 31 0 3225 135 4 4 chrX 2199782 2200301 -174773839 - L1PA16 LINE L1 -1 6165 5647 2193 229 7 37 chrX 2200314 2200439 -174773701 - L1MB7 LINE L1 -9 6175 6048 2113 105 10 0 chrX 2200439 2200745 -174773395 - AluSx SINE Alu -3 309 1 2193 229 7 37 chrX 2200745 2201182 -174772958 - L1MB7 LINE L1 -136 6048 5630 342 309 63 37 chrX 2201184 2201375 -174772765 + MIR SINE MIR 67 262 0 653 182 108 140 chrX 2201473 2201808 -174772332 + MLT1C LTR MaLR 1 324 -143 741 203 98 87 chrX 2201817 2202103 -174772037 + MLT1C LTR MaLR 45 333 -134 675 200 21 28 chrX 2202361 2202506 -174771634 + MLT1C LTR MaLR 316 459 -8 969 129 0 0 chrX 2202549 2202689 -174771451 + AluJo SINE Alu 2 141 -171 2117 109 0 22 chrX 2202689 2203002 -174771138 + AluSx SINE Alu 1 306 -6 2071 112 20 0 chrX 2203010 2203315 -174770825 + AluSx SINE Alu 1 311 -1 1285 178 5 0 chrX 2203423 2203642 -174770498 + AluJo SINE Alu 1 220 -92 237 214 0 18 chrX 2203642 2203698 -174770442 + AluJb SINE Alu 86 140 -162 1337 163 96 4 chrX 2203701 2203952 -174770188 + AluJo SINE Alu 9 282 -30 697 136 36 0 chrX 2205009 2205119 -174769021 + FLAM_C SINE Alu 12 125 -18 600 159 28 9 chrX 2205122 2205229 -174768911 - L1MB3 LINE L1 -10 6173 6065 1455 186 4 8 chrX 2205378 2205642 -174768498 - AluJo SINE Alu -45 267 5 736 217 63 10 chrX 2205796 2205991 -174768149 + MLT1B LTR MaLR 1 197 -177 902 186 50 25 chrX 2205991 2206190 -174767950 - L1MB1 LINE L1 -12 6156 5953 767 214 0 0 chrX 2206228 2206368 -174767772 + MLT1B LTR MaLR 193 332 -58 1981 121 175 22 chrX 2206456 2206827 -174767313 - MSTA LTR MaLR 0 428 1 2681 184 29 6 chrX 2207149 2207665 -174766475 + L1MB1 LINE L1 5586 6113 -76 2480 94 9 0 chrX 2207665 2208003 -174766137 + L1PB1 LINE L1 5800 6144 -7 377 174 43 0 chrX 2208024 2208093 -174766047 + L1MB1 LINE L1 6092 6163 -5 22 0 0 0 chrX 2208415 2208437 -174765703 + AT_rich Low_complexity Low_complexity 1 22 0 213 132 0 0 chrX 2208919 2208957 -174765183 + (TCC)n Simple_repeat Simple_repeat 3 40 0 255 86 17 35 chrX 2209164 2209222 -174764918 + (TCC)n Simple_repeat Simple_repeat 1 57 0 615 206 12 8 chrX 2209243 2209480 -174764660 + CT-rich Low_complexity Low_complexity 1 237 0 1230 203 31 157 chrX 2209704 2209754 -174764386 + L1MB5 LINE L1 5613 5668 -506 1783 114 96 7 chrX 2209754 2210034 -174764106 + AluSx SINE Alu 1 305 -7 708 170 0 30 chrX 2210044 2210179 -174763961 + FLAM_C SINE Alu 1 131 -2 1230 203 31 157 chrX 2210179 2210239 -174763901 + L1MB5 LINE L1 5678 5744 -430 1784 158 10 0 chrX 2210239 2210542 -174763598 + AluJb SINE Alu 1 306 -6 1230 203 31 157 chrX 2210542 2210907 -174763233 + L1MB5 LINE L1 5744 6004 -170 2284 94 0 0 chrX 2210907 2211206 -174762934 + AluSx SINE Alu 6 304 -8 1230 203 31 157 chrX 2211206 2211356 -174762784 + L1MB5 LINE L1 6004 6171 -3 4414 135 12 25 chrX 2211825 2212545 -174761595 - MER50 LTR ERV1 -23 711 1 2496 73 0 0 chrX 2212549 2212863 -174761277 + MER41A LTR ERV1 1 314 -240 282 116 0 0 chrX 2213308 2213351 -174760789 + (T)n Simple_repeat Simple_repeat 1 43 0 712 216 9 0 chrX 2213991 2214139 -174760001 + L1MB2 LINE L1 5772 5930 -232 2284 122 20 58 chrX 2214141 2214293 -174759847 - LTR56 LTR ERV1 0 445 289 966 154 0 0 chrX 2214293 2214442 -174759698 - FRAM SINE Alu -17 149 1 2284 122 20 58 chrX 2214442 2214761 -174759379 - LTR56 LTR ERV1 -156 289 9 285 247 27 0 chrX 2214767 2214850 -174759290 + L1MB2 LINE L1 5928 6012 -167 1655 168 7 3 chrX 2214929 2215220 -174758920 + AluJb SINE Alu 21 312 0 1337 140 5 10 chrX 2215253 2215460 -174758680 + THE1B LTR MaLR 159 364 0 4130 134 11 11 chrX 2215555 2215996 -174758144 + MER41B LTR ERV1 1 444 -191 1963 173 16 16 chrX 2215996 2216371 -174757769 - THE1C LTR MaLR 0 375 1 4130 134 11 11 chrX 2216371 2216564 -174757576 + MER41B LTR ERV1 443 635 0 469 160 21 0 chrX 2217077 2217171 -174756969 + LTR26 LTR ERV1 1 96 -507 799 282 7 22 chrX 2217431 2217548 -174756592 + L1MD2 LINE L1 6077 6194 -165 1997 134 44 49 chrX 2217548 2217914 -174756226 + THE1B LTR MaLR 1 364 0 799 282 7 22 chrX 2217914 2218073 -174756067 + L1MD2 LINE L1 6194 6349 -10 3008 201 36 30 chrX 2218339 2218981 -174755159 + MER82 DNA MER2_type 7 652 -1 290 317 99 32 chrX 2218988 2219396 -174754744 + MLT1E LTR MaLR 20 499 -96 640 191 95 0 chrX 2220821 2220947 -174753193 - MLT1E1 LTR MaLR -110 544 407 1927 178 31 3 chrX 2221310 2221665 -174752475 - MLT1A1 LTR MaLR 0 365 1 2185 231 77 58 chrX 2221972 2222436 -174751704 - MLT1E1 LTR MaLR 0 654 173 1979 87 53 20 chrX 2222436 2222736 -174751404 - AluSq SINE Alu -1 312 3 2185 231 77 58 chrX 2222736 2222907 -174751233 - MLT1E1 LTR MaLR -481 173 7 3580 156 114 36 chrX 2222907 2223655 -174750485 - L1PA16 LINE L1 -18 6148 5343 2064 98 11 0 chrX 2223661 2223972 -174750168 + AluSx SINE Alu 1 314 0 958 144 0 54 chrX 2223972 2224186 -174749954 + AluSg/x SINE Alu 124 328 0 2347 74 3 3 chrX 2225098 2225407 -174748733 - AluSx SINE Alu -3 309 1 3422 92 54 75 chrX 2225465 2225683 -174748457 + L1PA16 LINE L1 5569 5790 -376 2145 89 20 3 chrX 2225683 2225987 -174748153 + AluSg SINE Alu 1 309 -1 3422 92 54 75 chrX 2225987 2226377 -174747763 + L1PA16 LINE L1 5790 6164 -2 2524 55 0 0 chrX 2226392 2226703 -174747437 + AluY SINE Alu 1 311 0 510 299 77 30 chrX 2226749 2226983 -174747157 + MLT1J LTR MaLR 266 510 -1 2378 178 17 5 chrX 2227634 2228056 -174746084 + MSTB1 LTR MaLR 6 432 0 1585 113 20 24 chrX 2228279 2228526 -174745614 + AluJo SINE Alu 50 295 -17 2352 81 0 0 chrX 2228970 2229265 -174744875 + AluSq SINE Alu 3 297 -16 1029 190 44 0 chrX 2229541 2229767 -174744373 + L1MB5 LINE L1 5939 6174 0 4018 110 2 2 chrX 2230059 2230613 -174743527 + MER41A LTR ERV1 1 554 0 1787 205 9 36 chrX 2230778 2231188 -174742952 + L1MC2 LINE L1 5937 6337 -7 1955 117 11 65 chrX 2231188 2231539 -174742601 + L1PB2 LINE L1 5817 6148 -3 2098 104 0 24 chrX 2231696 2231983 -174742157 + AluSx SINE Alu 1 280 -32 258 32 0 0 chrX 2231985 2232016 -174742124 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 225 94 0 0 chrX 2232051 2232083 -174742057 + (ATG)n Simple_repeat Simple_repeat 2 33 0 1438 126 44 139 chrX 2232084 2232219 -174741921 + AluJo SINE Alu 1 90 -222 2256 112 3 3 chrX 2232219 2232523 -174741617 + AluSg SINE Alu 1 304 -6 1438 126 44 139 chrX 2232523 2232704 -174741436 + AluJo SINE Alu 90 287 -25 2300 112 0 0 chrX 2233201 2233497 -174740643 - AluSx SINE Alu -16 296 1 906 125 0 8 chrX 2233523 2233651 -174740489 + FLAM_C SINE Alu 1 127 -16 899 239 126 60 chrX 2234351 2234535 -174739605 + L1ME3A LINE L1 5145 5315 -855 2266 117 0 0 chrX 2234535 2234835 -174739305 + AluSx SINE Alu 1 300 -12 899 239 126 60 chrX 2234835 2234846 -174739294 + L1ME3A LINE L1 5315 5324 -846 2080 142 7 3 chrX 2234846 2235155 -174738985 + AluSx SINE Alu 1 310 -2 899 239 126 60 chrX 2235155 2235612 -174738528 + L1ME3A LINE L1 5324 5858 -312 * 1990 217 41 29 chrX 2235225 2235713 -174738427 + L1MA3 LINE L1 5477 5970 -335 * 3970 126 35 0 chrX 2235280 2235884 -174738256 + L1PA16 LINE L1 5522 6146 -20 849 192 18 0 chrX 2235893 2236060 -174738080 + L1MB3 LINE L1 5428 5597 -577 406 143 16 0 chrX 2236060 2236123 -174738017 + Charlie1 DNA MER1_type 2697 2760 -1 856 222 6 6 chrX 2236504 2236684 -174737456 + MER58A DNA MER1_type 45 224 0 2201 193 30 17 chrX 2236891 2237353 -174736787 + MER89 LTR ERV1 1 468 -91 519 186 28 11 chrX 2237417 2237594 -174736546 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 682 166 29 0 chrX 2237654 2237829 -174736311 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 307 208 42 0 chrX 2237843 2237963 -174736177 + (TGGA)n Simple_repeat Simple_repeat 3 127 0 615 153 5 53 chrX 2237982 2238171 -174735969 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 397 218 11 0 chrX 2238183 2238270 -174735870 + MER89 LTR ERV1 472 559 0 23 54 0 0 chrX 2239123 2239160 -174734980 + AT_rich Low_complexity Low_complexity 1 37 0 1660 196 3 20 chrX 2239396 2239697 -174734443 - AluJo SINE Alu -16 296 1 581 174 22 28 chrX 2240490 2240817 -174733323 + (TCCA)n Simple_repeat Simple_repeat 1 325 0 2837 202 50 5 chrX 2241011 2241596 -174732544 + L1MB3 LINE L1 5566 6176 -7 491 225 0 5 chrX 2242051 2242273 -174731867 + (TGGA)n Simple_repeat Simple_repeat 1 220 0 253 215 25 33 chrX 2242247 2242368 -174731772 + (TGAA)n Simple_repeat Simple_repeat 4 123 0 * 478 242 6 6 chrX 2242402 2242580 -174731560 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 625 217 7 0 chrX 2242595 2242873 -174731267 + (TGGA)n Simple_repeat Simple_repeat 1 280 0 801 170 0 11 chrX 2242898 2243270 -174730870 + (TGGA)n Simple_repeat Simple_repeat 1 367 0 312 352 0 0 chrX 2243271 2243362 -174730778 + (TGGG)n Simple_repeat Simple_repeat 1 91 0 705 208 0 0 chrX 2243363 2243531 -174730609 + (TGGA)n Simple_repeat Simple_repeat 2 169 0 471 202 0 0 chrX 2243543 2243657 -174730483 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 192 77 0 0 chrX 2243667 2243693 -174730447 + (TG)n Simple_repeat Simple_repeat 1 26 0 2719 45 0 0 chrX 2244408 2244719 -174729421 - AluY SINE Alu 0 311 1 685 58 8 91 chrX 2244721 2244842 -174729298 + LTR36 LTR ERV1 11 121 -490 2279 79 3 0 chrX 2244843 2245134 -174729006 + AluY SINE Alu 1 292 -19 1169 127 12 0 chrX 2245134 2245300 -174728840 + LTR36 LTR ERV1 444 611 0 2242 116 0 3 chrX 2245532 2245833 -174728307 + AluSx SINE Alu 1 300 -12 2154 119 16 0 chrX 2245859 2246162 -174727978 + AluSx SINE Alu 1 308 -4 1834 198 98 30 chrX 2246636 2246761 -174727379 - MLT1D LTR MaLR -2 503 388 1730 170 3 7 chrX 2246761 2247044 -174727096 + AluJo SINE Alu 1 282 -30 1834 198 98 30 chrX 2247044 2247389 -174726751 - MLT1D LTR MaLR -117 388 1 484 168 11 0 chrX 2247537 2247632 -174726508 - L1PA11 LINE L1 0 6174 6079 444 164 0 0 chrX 2247632 2247705 -174726435 - L1P4 LINE L1 -680 5488 5416 * 4556 127 13 1 chrX 2247681 2248357 -174725783 - L1PA11 LINE L1 -81 6093 5410 1157 171 9 28 chrX 2248645 2248856 -174725284 + AluJo SINE Alu 87 293 -19 1116 124 74 109 chrX 2248869 2249152 -174724988 + L1MA8 LINE L1 6019 6291 0 207 281 0 0 chrX 2249174 2249238 -174724902 + A-rich Low_complexity Low_complexity 1 64 0 2314 102 0 0 chrX 2249238 2249531 -174724609 + AluSx SINE Alu 1 293 -19 674 186 0 0 chrX 2249617 2249730 -174724410 + FLAM_A SINE Alu 25 137 -5 2172 133 0 0 chrX 2249754 2250055 -174724085 - AluSx SINE Alu -11 301 1 605 173 27 0 chrX 2250184 2250293 -174723847 - MLT1D LTR MaLR -6 499 388 2085 145 117 25 chrX 2250293 2250656 -174723484 - MSTA LTR MaLR 0 428 25 2746 89 14 3 chrX 2250656 2251025 -174723115 + THE1C LTR MaLR 3 375 0 2085 145 117 25 chrX 2251025 2251053 -174723087 - MSTA LTR MaLR -403 25 1 1831 220 32 3 chrX 2251053 2251430 -174722710 - MLT1D LTR MaLR -113 392 5 964 162 52 0 chrX 2251762 2251916 -174722224 - AluJo SINE Alu -30 282 121 52 0 0 0 chrX 2251948 2252000 -174722140 + AT_rich Low_complexity Low_complexity 1 52 0 4479 148 3 1 chrX 2252012 2252709 -174721431 + L1PA15 LINE L1 5467 6164 -1 2123 86 61 0 chrX 2252714 2252993 -174721147 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 2253013 2253036 -174721104 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1413 206 11 11 chrX 2253038 2253320 -174720820 - AluJo SINE Alu -30 282 1 401 322 117 23 chrX 2253438 2253588 -174720552 - HAL1 LINE L1 -145 2362 2227 321 26 0 0 chrX 2253588 2253626 -174720514 + (CA)n Simple_repeat Simple_repeat 1 38 0 401 322 117 23 chrX 2253626 2253990 -174720150 - HAL1 LINE L1 -280 2227 1800 192 279 0 51 chrX 2254011 2254090 -174720050 + MIR SINE MIR 82 156 -106 376 236 115 115 chrX 2254171 2254510 -174719630 - HAL1 LINE L1 -698 1809 1471 2384 96 0 0 chrX 2254524 2254825 -174719315 - AluSx SINE Alu -11 301 1 433 208 3 44 chrX 2254833 2255137 -174719003 + CT-rich Low_complexity Low_complexity 1 291 0 1794 159 7 17 chrX 2255288 2255590 -174718550 + AluJb SINE Alu 1 299 -13 273 29 0 0 chrX 2255954 2255988 -174718152 + (TG)n Simple_repeat Simple_repeat 1 34 0 1935 140 25 3 chrX 2256075 2256396 -174717744 + MLT1A1 LTR MaLR 1 328 -37 257 221 13 39 chrX 2256780 2256857 -174717283 + L1M3 LINE L1 5633 5707 -473 1791 185 7 7 chrX 2256917 2257214 -174716926 - AluJb SINE Alu -15 297 1 2124 117 0 0 chrX 2257226 2257531 -174716609 - AluSx SINE Alu 0 305 1 1610 96 9 0 chrX 2257537 2257767 -174716373 - L1PA14 LINE L1 -2 6159 5928 303 49 0 0 chrX 2258120 2258161 -174715979 + (TA)n Simple_repeat Simple_repeat 2 42 0 258 111 0 0 chrX 2258161 2258201 -174715939 + (GA)n Simple_repeat Simple_repeat 1 40 0 1674 96 23 0 chrX 2258390 2258610 -174715530 - AluSg/x SINE Alu -4 308 84 1719 185 3 3 chrX 2258620 2258923 -174715217 - AluJo SINE Alu -9 303 1 1810 166 13 17 chrX 2259025 2259326 -174714814 + AluJo SINE Alu 1 300 -12 189 0 0 0 chrX 2259495 2259516 -174714624 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 979 192 6 0 chrX 2259944 2260126 -174714014 - AluJo SINE Alu -7 305 123 249 177 32 32 chrX 2260163 2260207 -174713933 - L1M LINE L1 -2398 5410 5364 1948 115 21 10 chrX 2260207 2260495 -174713645 - AluSx SINE Alu -21 291 1 249 177 32 32 chrX 2260495 2260512 -174713628 - L1M LINE L1 -2443 5365 5349 554 67 0 0 chrX 2260555 2260630 -174713510 - L1PA5 LINE L1 0 6154 6080 4389 141 53 87 chrX 2260630 2261105 -174713035 - L1MC1 LINE L1 -2 6331 5841 1948 153 40 0 chrX 2261105 2261405 -174712735 - AluJo SINE Alu 0 312 1 4389 141 53 87 chrX 2261405 2261466 -174712674 - L1MC1 LINE L1 -492 5841 5779 2437 93 0 0 chrX 2261466 2261768 -174712372 - AluSg SINE Alu -8 302 1 2319 100 3 3 chrX 2261770 2262081 -174712059 - AluSx SINE Alu -1 311 1 4389 141 53 87 chrX 2262081 2262491 -174711649 - L1MC1 LINE L1 -555 5778 5414 523 277 128 36 chrX 2262494 2262692 -174711448 - L1ME3A LINE L1 -224 5946 5768 2227 141 30 22 chrX 2262692 2263053 -174711087 + THE1B LTR MaLR 1 364 0 523 277 128 36 chrX 2263053 2263403 -174710737 - L1ME3A LINE L1 -402 5768 5337 2093 139 3 0 chrX 2263419 2263713 -174710427 - AluJo SINE Alu -13 299 5 336 304 172 25 chrX 2263715 2264430 -174709710 - L1ME3A LINE L1 -2064 4082 3247 1471 116 9 9 chrX 2264430 2264646 -174709494 - AluSq SINE Alu -16 297 82 336 304 172 25 chrX 2264646 2264691 -174709449 - L1ME3A LINE L1 -2899 3247 3210 43 108 0 0 chrX 2264697 2264873 -174709267 + AT_rich Low_complexity Low_complexity 1 176 0 919 231 30 0 chrX 2265926 2266125 -174708015 + MER2 DNA MER2_type 1 205 -140 1139 161 9 28 chrX 2266127 2266338 -174707802 - AluJo SINE Alu -10 302 96 * 1299 131 0 53 chrX 2266336 2266542 -174707598 - AluSx SINE Alu -117 195 1 1057 128 0 0 chrX 2266841 2266989 -174707151 + FRAM SINE Alu 11 158 -18 672 194 7 28 chrX 2267241 2267385 -174706755 - MLT1C LTR MaLR 0 467 327 4363 153 33 30 chrX 2267385 2267505 -174706635 - LTR39 LTR ERV1 -28 755 637 1942 169 0 0 chrX 2267505 2267813 -174706327 + AluJb SINE Alu 1 308 -4 2307 62 0 36 chrX 2267813 2268117 -174706023 + AluY SINE Alu 1 293 -18 4363 153 33 30 chrX 2268117 2268748 -174705392 - LTR39 LTR ERV1 -145 638 1 3133 100 27 11 chrX 2268749 2269063 -174705077 + MER41B LTR ERV1 1 326 -309 1710 168 58 9 chrX 2269063 2269390 -174704750 + MER61A LTR ERV1 1 343 0 3133 100 27 11 chrX 2269390 2269524 -174704616 + MER41B LTR ERV1 326 456 -179 868 139 0 29 chrX 2269527 2269664 -174704476 + AluSg/x SINE Alu 165 297 -15 2298 103 0 0 chrX 2269686 2269978 -174704162 + AluSx SINE Alu 2 293 -19 729 219 2 26 chrX 2270125 2270253 -174703887 - L1MB3 LINE L1 -212 5956 5835 2243 98 10 7 chrX 2270253 2270558 -174703582 - AluSq SINE Alu -7 306 1 729 219 2 26 chrX 2270558 2270639 -174703501 - L1MB3 LINE L1 -333 5835 5754 612 220 22 78 chrX 2270698 2270930 -174703210 + MER20 DNA MER1_type 1 219 0 1985 125 14 3 chrX 2271137 2271426 -174702714 - AluSx SINE Alu -20 292 1 231 170 0 0 chrX 2271534 2271581 -174702559 + L1MC4 LINE L1 6659 6705 -1337 2400 86 3 3 chrX 2271756 2272060 -174702080 + AluSx SINE Alu 1 304 -8 2248 107 0 0 chrX 2272179 2272470 -174701670 - AluSx SINE Alu -21 291 1 1260 184 99 64 chrX 2272564 2272698 -174701442 + AluJo SINE Alu 1 129 -183 185 0 40 0 chrX 2272698 2272723 -174701417 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1260 184 99 64 chrX 2272723 2272870 -174701270 + AluJo SINE Alu 129 292 -20 1435 211 43 0 chrX 2274226 2274525 -174699615 - AluJo SINE Alu 0 312 1 2161 98 0 0 chrX 2274709 2274983 -174699157 + AluSx SINE Alu 1 274 -38 2419 76 3 17 chrX 2274985 2275287 -174698853 - AluSq SINE Alu -15 298 1 1348 144 5 5 chrX 2275289 2275497 -174698643 + AluJb SINE Alu 102 309 -3 2272 88 0 14 chrX 2275767 2276064 -174698076 - AluSc SINE Alu -16 293 1 30 0 0 0 chrX 2276075 2276105 -174698035 + AT_rich Low_complexity Low_complexity 1 30 0 870 122 0 29 chrX 2276107 2276246 -174697894 - L1MA2 LINE L1 0 6304 6170 1598 199 0 0 chrX 2276265 2276531 -174697609 - AluJo SINE Alu -24 288 23 2445 104 0 0 chrX 2277013 2277322 -174696818 - AluSx SINE Alu -3 309 1 886 156 0 21 chrX 2277413 2277554 -174696586 + FLAM_C SINE Alu 1 138 -5 2586 54 0 0 chrX 2277621 2277918 -174696222 + AluY SINE Alu 1 297 -14 2118 110 0 4 chrX 2278066 2278380 -174695760 + AluSg SINE Alu 1 313 0 195 42 0 0 chrX 2279232 2279256 -174694884 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1801 184 0 7 chrX 2279278 2279577 -174694563 + AluJo SINE Alu 1 297 -15 330 87 0 0 chrX 2279851 2279897 -174694243 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 1793 178 10 24 chrX 2279897 2280195 -174693945 - AluJo SINE Alu -18 294 1 1536 165 3 93 chrX 2280680 2281013 -174693127 + AluJo SINE Alu 1 303 -9 1374 144 137 46 chrX 2281223 2281486 -174692654 - AluJo SINE Alu -17 295 9 183 100 0 0 chrX 2282239 2282269 -174691871 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2430 85 0 0 chrX 2282272 2282591 -174691549 - L1PA13 LINE L1 -19 6144 5826 198 0 0 0 chrX 2282591 2282613 -174691527 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 196 36 5 chrX 2282613 2282833 -174691307 - AluJo SINE Alu -28 284 58 2394 89 0 3 chrX 2282842 2283144 -174690996 - AluY SINE Alu -10 301 1 1923 117 3 57 chrX 2283180 2283508 -174690632 - AluSq SINE Alu 0 316 5 215 163 0 20 chrX 2284289 2284338 -174689802 + T-rich Low_complexity Low_complexity 2 49 0 305 314 0 59 chrX 2284880 2284982 -174689158 + L1MC4 LINE L1 6614 6709 -1333 * 324 252 37 30 chrX 2284903 2285018 -174689122 - L1MCa LINE L1 -1337 6985 1973 234 154 66 22 chrX 2285056 2285147 -174688993 + (TA)n Simple_repeat Simple_repeat 1 95 0 1383 72 0 0 chrX 2285156 2285322 -174688818 + AluSg SINE Alu 1 166 -144 682 158 9 11 chrX 2285338 2285499 -174688641 + L1PB4 LINE L1 5782 5901 -255 25 102 0 0 chrX 2285499 2285587 -174688553 + AT_rich Low_complexity Low_complexity 1 88 0 316 194 0 82 chrX 2285590 2285688 -174688452 - L1MC4 LINE L1 -1339 6703 6614 183 129 0 0 chrX 2285688 2285719 -174688421 + (CA)n Simple_repeat Simple_repeat 2 32 0 1265 163 112 47 chrX 2285765 2286041 -174688099 - AluJb SINE Alu -8 294 1 281 229 33 57 chrX 2287265 2287387 -174686753 + MER53 DNA DNA 37 155 -34 314 297 69 14 chrX 2287498 2287643 -174686497 - L1MD2 LINE L1 -1 6358 6206 1048 110 0 14 chrX 2287818 2287963 -174686177 + AluSq/x SINE Alu 1 143 -169 30 45 0 0 chrX 2288387 2288431 -174685709 + GC_rich Low_complexity Low_complexity 1 44 0 315 243 20 15 chrX 2290020 2290227 -174683913 + CT-rich Low_complexity Low_complexity 1 208 0 2069 102 0 7 chrX 2291282 2291557 -174682583 + AluSx SINE Alu 1 273 -39 1620 183 23 20 chrX 2291868 2292169 -174681971 + AluJb SINE Alu 1 302 -10 374 297 61 0 chrX 2292586 2292751 -174681389 - L1MD3 LINE L1 -19 7976 7802 1121 129 0 23 chrX 2292752 2292923 -174681217 - FRAM SINE Alu -10 166 1 344 260 7 84 chrX 2292923 2293077 -174681063 - L1MD2 LINE L1 -176 6183 6042 2108 99 57 0 chrX 2293091 2293373 -174680767 - AluSp SINE Alu -15 298 1 2052 164 23 3 chrX 2293584 2293938 -174680202 - MLT1A1 LTR MaLR -4 361 1 209 106 0 64 chrX 2294288 2294335 -174679805 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 449 167 0 0 chrX 2294365 2294437 -174679703 - FLAM_A SINE Alu -26 116 45 199 333 30 30 chrX 2294439 2294538 -174679602 + L2 LINE L2 3191 3289 -24 315 286 95 19 chrX 2294556 2294661 -174679479 + MER81 DNA DNA 1 113 -1 1885 148 7 13 chrX 2294802 2295106 -174679034 - AluJb SINE Alu -4 308 7 728 157 35 0 chrX 2295345 2295460 -174678680 + AluJb SINE Alu 176 294 -18 1722 162 17 24 chrX 2295469 2295766 -174678374 + AluJo SINE Alu 1 295 -17 2469 64 0 19 chrX 2295964 2296275 -174677865 + AluY SINE Alu 1 305 -6 1737 194 14 14 chrX 2296529 2296879 -174677261 + MLT1A1 LTR MaLR 14 363 -2 240 292 0 0 chrX 2296969 2297034 -174677106 - MLT1E2 LTR MaLR 0 626 562 1285 169 8 8 chrX 2297036 2297284 -174676856 + L1MA6 LINE L1 5675 5922 -378 1699 142 31 17 chrX 2297285 2297573 -174676567 - AluJb SINE Alu -20 292 1 2101 134 3 13 chrX 2297984 2298298 -174675842 + AluSx SINE Alu 1 311 -1 1132 124 0 28 chrX 2298649 2298826 -174675314 - FRAM SINE Alu -9 167 1 1730 179 10 17 chrX 2298972 2299268 -174674872 + AluJb SINE Alu 13 306 -6 4199 101 0 0 chrX 2299825 2300379 -174673761 - MER41A LTR ERV1 0 554 1 1897 168 24 0 chrX 2300557 2300855 -174673285 + AluJo SINE Alu 8 312 0 1671 158 39 32 chrX 2301053 2301183 -174672957 + AluJb SINE Alu 1 129 -183 207 0 0 0 chrX 2301183 2301206 -174672934 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1671 158 39 32 chrX 2301206 2301385 -174672755 + AluJb SINE Alu 129 312 0 189 196 0 0 chrX 2301393 2301439 -174672701 + A-rich Low_complexity Low_complexity 1 46 0 315 296 22 7 chrX 2301570 2301705 -174672435 - L1M4 LINE L1 -2910 3236 3100 2285 107 0 16 chrX 2302302 2302619 -174671521 + AluSx SINE Alu 1 312 0 2242 112 3 3 chrX 2302620 2302923 -174671217 + AluSx SINE Alu 2 304 -8 263 71 0 0 chrX 2302949 2302991 -174671149 + Alu SINE Alu 258 299 -1 2083 109 6 64 chrX 2303065 2303395 -174670745 + AluSx SINE Alu 1 311 -1 200 100 25 0 chrX 2303408 2303448 -174670692 + (CAA)n Simple_repeat Simple_repeat 2 42 0 784 149 0 71 chrX 2303471 2303612 -174670528 + FLAM_C SINE Alu 3 133 0 1700 179 3 19 chrX 2304105 2304413 -174669727 + AluJo SINE Alu 1 303 -9 1700 187 0 39 chrX 2304572 2304882 -174669258 - AluJb SINE Alu -12 300 3 2003 131 7 0 chrX 2304896 2305218 -174668922 - AluSx SINE Alu 0 324 1 1924 162 17 8 chrX 2305299 2305650 -174668490 + MER47A DNA MER2_type 13 366 0 1897 125 39 0 chrX 2305650 2305961 -174668179 - MLT1A1 LTR MaLR -32 333 11 1984 124 7 0 chrX 2306280 2306555 -174667585 + AluJo SINE Alu 36 312 0 204 363 26 18 chrX 2306746 2306859 -174667281 + L2 LINE L2 2181 2294 -1020 1257 244 64 33 chrX 2306931 2307353 -174666787 - MLT1C LTR MaLR -27 440 6 663 176 60 166 chrX 2307368 2307519 -174666621 - MLT1C LTR MaLR -122 345 180 2177 91 3 30 chrX 2307519 2307847 -174666293 - AluSq SINE Alu 0 313 5 663 176 60 166 chrX 2307847 2307986 -174666154 - MLT1C LTR MaLR -287 180 102 2636 51 0 10 chrX 2307986 2308300 -174665840 - AluY SINE Alu 0 311 1 663 176 60 166 chrX 2308300 2308388 -174665752 - MLT1C LTR MaLR -365 102 6 2564 67 0 0 chrX 2309129 2309428 -174664712 + AluY SINE Alu 1 299 -12 539 219 8 8 chrX 2309429 2309557 -174664583 - MER3 DNA MER1_type -80 129 2 745 238 52 9 chrX 2309567 2309777 -174664363 + MER20 DNA MER1_type 1 219 0 303 191 0 0 chrX 2309795 2309863 -174664277 + CT-rich Low_complexity Low_complexity 1 68 0 307 191 26 17 chrX 2309886 2310001 -174664139 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 237 149 0 21 chrX 2310057 2310104 -174664036 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 308 131 0 16 chrX 2310104 2310165 -174663975 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 737 231 42 46 chrX 2310169 2310385 -174663755 + MER20 DNA MER1_type 1 215 -4 537 237 63 90 chrX 2310556 2310959 -174663181 + LTR15 LTR ERV1 112 596 0 1841 168 7 0 chrX 2311201 2311505 -174662635 - AluJb SINE Alu -6 306 1 347 220 0 20 chrX 2311845 2311945 -174662195 - L1MB7 LINE L1 0 6184 6087 2466 82 0 0 chrX 2311955 2312260 -174661880 - AluY SINE Alu -6 305 1 1640 177 21 7 chrX 2312270 2312553 -174661587 - AluJo SINE Alu -24 288 2 1781 146 13 48 chrX 2313066 2313375 -174660765 - AluJo SINE Alu -14 298 1 2303 104 0 0 chrX 2313495 2313792 -174660348 - AluSx SINE Alu -15 297 1 1530 141 0 4 chrX 2313795 2314022 -174660118 - AluSg/x SINE Alu -2 310 85 1473 149 86 4 chrX 2314658 2314926 -174659214 + AluJo SINE Alu 3 292 -20 685 143 0 61 chrX 2314946 2315093 -174659047 + L1MB3 LINE L1 6045 6182 -1 2326 86 3 10 chrX 2315105 2315406 -174658734 + AluSx SINE Alu 7 305 -7 813 182 8 0 chrX 2315420 2315552 -174658588 + FLAM_C SINE Alu 1 133 0 1900 154 0 7 chrX 2315891 2316190 -174657950 - AluJb SINE Alu -13 299 3 284 253 12 12 chrX 2316267 2316350 -174657790 - L1ME1 LINE L1 -22 6144 6062 264 246 254 7 chrX 2316402 2316540 -174657600 - MIR SINE MIR -12 250 79 501 187 23 12 chrX 2316594 2316765 -174657375 + GA-rich Low_complexity Low_complexity 4 176 0 2253 127 0 6 chrX 2316839 2317153 -174656987 + AluSx SINE Alu 1 312 0 1087 168 24 0 chrX 2317156 2317365 -174656775 + MLT1B LTR MaLR 172 385 -5 2452 90 0 3 chrX 2317674 2317985 -174656155 - AluSg SINE Alu 0 310 1 1868 156 10 16 chrX 2318087 2318401 -174655739 - AluJo SINE Alu 0 312 1 1333 224 68 30 chrX 2318761 2319189 -174654951 - MLT1C LTR MaLR -23 444 1 365 218 223 0 chrX 2319199 2319392 -174654748 - MLT1C LTR MaLR -122 345 110 301 120 0 120 chrX 2319404 2319479 -174654661 - FLAM SINE Alu 0 133 68 258 180 60 0 chrX 2319461 2319511 -174654629 - Alu SINE Alu -247 53 1 * 388 250 10 0 chrX 2319524 2319628 -174654512 - MLT1C LTR MaLR -359 108 4 23 0 0 0 chrX 2320275 2320298 -174653842 + AT_rich Low_complexity Low_complexity 1 23 0 1741 156 21 10 chrX 2320298 2320586 -174653554 - AluSx SINE Alu -21 291 1 1356 175 116 19 chrX 2320588 2320856 -174653284 - AluJb SINE Alu -18 294 1 185 0 40 0 chrX 2320856 2320881 -174653259 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1528 151 7 69 chrX 2320881 2321185 -174652955 - AluJo SINE Alu -27 285 1 2228 97 0 0 chrX 2321512 2321791 -174652349 + AluSx SINE Alu 1 279 -33 306 0 0 0 chrX 2321791 2321825 -174652315 + (CAA)n Simple_repeat Simple_repeat 2 35 0 703 290 74 7 chrX 2322208 2322491 -174651649 - MER46C DNA MER2_type -32 306 5 1922 187 11 6 chrX 2322540 2322899 -174651241 + L1PA16 LINE L1 5806 6166 0 289 275 0 14 chrX 2323045 2323114 -174651026 - MLT1J LTR MaLR -328 183 116 1067 149 17 6 chrX 2324457 2324638 -174649502 + AluJb SINE Alu 129 311 -1 2191 184 13 33 chrX 2324714 2324902 -174649238 - L1MA9 LINE L1 -191 6121 5931 2513 114 3 14 chrX 2324902 2325270 -174648870 - THE1B LTR MaLR 0 364 1 2191 184 13 33 chrX 2325270 2325533 -174648607 - L1MA9 LINE L1 -381 5931 5679 513 126 0 2 chrX 2325919 2326126 -174648014 + AluJo SINE Alu 9 250 -62 329 129 0 16 chrX 2326220 2326282 -174647858 + (GGA)n Simple_repeat Simple_repeat 3 63 0 470 244 6 0 chrX 2326365 2326521 -174647619 + GA-rich Low_complexity Low_complexity 1 157 0 246 105 0 0 chrX 2326942 2326980 -174647160 + (TC)n Simple_repeat Simple_repeat 2 39 0 2078 154 38 3 chrX 2327873 2328217 -174645923 - MLT1A1 LTR MaLR -5 360 5 186 133 0 0 chrX 2328918 2328948 -174645192 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 1299 180 120 11 chrX 2328951 2329218 -174644922 - AluJo SINE Alu -4 298 3 263 191 0 21 chrX 2329264 2329311 -174644829 + MLT1C LTR MaLR 422 467 0 23 54 0 0 chrX 2329713 2329750 -174644390 + AT_rich Low_complexity Low_complexity 1 37 0 893 172 6 0 chrX 2329758 2329921 -174644219 - AluJb SINE Alu -26 286 123 22 56 0 0 chrX 2329921 2329957 -174644183 + AT_rich Low_complexity Low_complexity 1 36 0 1284 201 123 4 chrX 2329982 2330250 -174643890 - AluJo SINE Alu -2 300 1 913 124 0 0 chrX 2330561 2330690 -174643450 + FLAM_C SINE Alu 1 129 -4 1456 132 4 0 chrX 2330704 2330931 -174643209 + AluSg/x SINE Alu 83 310 0 1790 150 3 0 chrX 2331115 2331401 -174642739 + AluJb SINE Alu 5 291 -21 583 266 31 36 chrX 2331878 2332070 -174642070 - MER20 DNA MER1_type -28 191 1 393 216 47 18 chrX 2332071 2332242 -174641898 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 840 204 31 62 chrX 2332352 2332577 -174641563 - MER20 DNA MER1_type -1 218 1 450 0 0 0 chrX 2332589 2332639 -174641501 + (TGGA)n Simple_repeat Simple_repeat 3 52 0 401 131 77 36 chrX 2332680 2332848 -174641292 + (TAGA)n Simple_repeat Simple_repeat 2 176 0 925 224 28 9 chrX 2332858 2333072 -174641068 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chrX 2333548 2333569 -174640571 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 2333760 2333800 -174640340 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 2334682 2334705 -174639435 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chrX 2334959 2334983 -174639157 + AT_rich Low_complexity Low_complexity 1 24 0 1718 166 0 19 chrX 2335023 2335330 -174638810 - AluJo SINE Alu -9 303 3 707 207 0 0 chrX 2335331 2335466 -174638674 - AluJo SINE Alu -176 136 2 2375 69 0 7 chrX 2335500 2335803 -174638337 + AluY SINE Alu 1 301 -10 939 134 0 0 chrX 2335814 2335956 -174638184 + AluSg/x SINE Alu 168 309 -1 2025 175 25 55 chrX 2335962 2336437 -174637703 - L1MB3 LINE L1 -63 6120 5660 1280 170 4 0 chrX 2336460 2336689 -174637451 - AluSg/x SINE Alu -10 302 73 411 218 0 0 chrX 2336761 2336862 -174637278 + (CA)n Simple_repeat Simple_repeat 1 101 0 1855 191 12 29 chrX 2336983 2337397 -174636743 - L1PB4 LINE L1 -1 6155 5749 244 191 29 29 chrX 2337404 2337420 -174636720 + L1P5 LINE L1 5476 5491 -663 1631 183 0 13 chrX 2337420 2337732 -174636408 + AluJo SINE Alu 3 310 -2 244 191 29 29 chrX 2337732 2337783 -174636357 + L1P5 LINE L1 5490 5543 -611 191 263 88 120 chrX 2338129 2338303 -174635837 + L2 LINE L2 2347 2514 -800 1416 222 13 0 chrX 2338303 2338487 -174635653 - AluJo SINE Alu -6 306 115 387 0 0 0 chrX 2338487 2338530 -174635610 + (TG)n Simple_repeat Simple_repeat 2 44 0 1416 222 13 0 chrX 2338530 2338647 -174635493 - AluJo SINE Alu -197 115 1 191 263 88 120 chrX 2338647 2338689 -174635451 + L2 LINE L2 2514 2556 -758 755 169 0 0 chrX 2338817 2338935 -174635205 + AluJo/FLAM SINE Alu 2 119 -193 1466 199 31 0 chrX 2338935 2339227 -174634913 - AluJo SINE Alu -7 305 5 2412 81 0 0 chrX 2339233 2339542 -174634598 - AluY SINE Alu -2 309 1 828 141 15 0 chrX 2339542 2339677 -174634463 - AluJo SINE Alu -175 137 1 1581 167 39 0 chrX 2340346 2340628 -174633512 - AluJo SINE Alu -16 296 4 229 185 31 0 chrX 2341020 2341085 -174633055 + CT-rich Low_complexity Low_complexity 4 70 0 1313 86 11 5 chrX 2342055 2342242 -174631898 + AluSg/x SINE Alu 125 312 0 1514 171 51 14 chrX 2342680 2342973 -174631167 - AluJo SINE Alu -8 304 1 1642 176 3 17 chrX 2343368 2343663 -174630477 + AluJb SINE Alu 1 291 -21 2228 90 7 0 chrX 2343665 2343965 -174630175 + AluSq SINE Alu 1 302 -11 1672 183 13 6 chrX 2344379 2344696 -174629444 - MLT1B LTR MaLR 0 390 72 1280 229 42 11 chrX 2344832 2345186 -174628954 + MLT1A1 LTR MaLR 1 365 0 1764 173 0 22 chrX 2347175 2347493 -174626647 + AluJb SINE Alu 2 312 0 245 96 62 48 chrX 2347571 2347717 -174626423 + (TA)n Simple_repeat Simple_repeat 1 148 0 527 41 67 58 chrX 2347743 2348346 -174625794 + (TA)n Simple_repeat Simple_repeat 1 608 0 341 211 105 0 chrX 2348411 2348506 -174625634 - MLT2B1 LTR ERVL -415 105 1 1962 159 17 11 chrX 2348510 2348869 -174625271 - MLT1A1 LTR MaLR -1 364 4 1935 191 16 0 chrX 2348918 2349284 -174624856 - MLT1B LTR MaLR -18 372 1 1302 96 0 0 chrX 2349344 2349521 -174624619 - AluSg/x SINE Alu -2 308 132 2351 77 0 0 chrX 2349522 2349819 -174624321 - AluY SINE Alu -14 297 1 679 140 0 0 chrX 2349819 2349926 -174624214 - L1PB1 LINE L1 -117 6034 5928 323 224 19 28 chrX 2349929 2350036 -174624104 - Charlie5 DNA MER1_type -273 2339 2234 276 237 30 59 chrX 2350022 2350157 -174623983 - Charlie5 DNA MER1_type -2476 136 6 * 2053 139 0 0 chrX 2351049 2351359 -174622781 - AluJb SINE Alu -2 310 1 2536 42 3 0 chrX 2351406 2351716 -174622424 - AluY SINE Alu 0 311 1 1776 173 3 6 chrX 2351786 2352098 -174622042 - AluJo SINE Alu -1 311 1 485 131 12 0 chrX 2352099 2352183 -174621957 + CT-rich Low_complexity Low_complexity 1 85 0 1001 127 0 6 chrX 2352184 2352365 -174621775 + (TCCCC)n Simple_repeat Simple_repeat 1 180 0 1316 146 13 34 chrX 2352680 2352913 -174621227 - MER46A DNA MER2_type -7 229 2 781 191 0 0 chrX 2353016 2353157 -174620983 - FLAM_C SINE Alu 0 143 3 468 0 0 0 chrX 2353297 2353349 -174620791 + (CA)n Simple_repeat Simple_repeat 1 52 0 258 309 49 16 chrX 2353351 2353474 -174620666 - L1MC5 LINE L1 -69 7892 7766 326 143 0 100 chrX 2353567 2353637 -174620503 + AluJo SINE Alu 85 147 -155 * 804 222 125 0 chrX 2353636 2353812 -174620328 + MER58A DNA MER1_type 27 224 0 1642 235 5 3 chrX 2353865 2354257 -174619883 + L1MB3 LINE L1 5790 6182 -1 294 243 35 18 chrX 2354259 2354428 -174619712 + (TA)n Simple_repeat Simple_repeat 2 173 0 80 70 0 0 chrX 2354465 2354622 -174619518 + AT_rich Low_complexity Low_complexity 1 157 0 226 296 23 6 chrX 2354681 2354857 -174619283 + (TA)n Simple_repeat Simple_repeat 2 180 0 2068 120 7 3 chrX 2355635 2355943 -174618197 - AluSg SINE Alu -1 309 1 702 151 36 130 chrX 2355953 2356009 -174618131 - L1MB5 LINE L1 -1 6179 6119 1591 182 0 7 chrX 2356009 2356305 -174617835 - AluJo SINE Alu -18 294 1 702 151 36 130 chrX 2356305 2356440 -174617700 - L1MB5 LINE L1 -61 6119 6006 492 198 116 16 chrX 2356440 2356561 -174617579 - MLT1C LTR MaLR -327 140 8 1593 188 3 13 chrX 2357531 2357840 -174616300 - AluJo SINE Alu -6 306 1 1295 139 60 0 chrX 2358585 2358786 -174615354 - LTR36 LTR ERV1 0 611 399 2104 112 3 22 chrX 2358925 2359239 -174614901 - AluSx SINE Alu -4 308 1 180 0 0 0 chrX 2359311 2359331 -174614809 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1566 160 110 10 chrX 2359337 2359536 -174614604 - L1PA15 LINE L1 -21 6144 5946 414 179 193 50 chrX 2359536 2359676 -174614464 - L1MA4 LINE L1 -362 5938 5779 718 99 9 9 chrX 2360400 2360511 -174613629 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chrX 2360517 2360541 -174613599 + AT_rich Low_complexity Low_complexity 1 24 0 4244 122 18 0 chrX 2360696 2361320 -174612820 - MER41B LTR ERV1 0 635 1 256 239 15 15 chrX 2362283 2362350 -174611790 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 443 256 10 0 chrX 2362364 2362669 -174611471 + (CCCA)n Simple_repeat Simple_repeat 1 308 0 858 180 0 0 chrX 2362672 2362850 -174611290 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 220 195 26 39 chrX 2362894 2363048 -174611092 + (TCTA)n Simple_repeat Simple_repeat 3 154 0 518 207 23 0 chrX 2363061 2363235 -174610905 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 22 35 0 0 chrX 2363696 2363725 -174610415 + AT_rich Low_complexity Low_complexity 1 29 0 2068 98 23 10 chrX 2363894 2364201 -174609939 + AluSx SINE Alu 1 311 -1 523 235 0 13 chrX 2364822 2364975 -174609165 + CT-rich Low_complexity Low_complexity 4 154 0 341 58 0 39 chrX 2364983 2365035 -174609105 + (TTTCC)n Simple_repeat Simple_repeat 1 50 0 419 143 16 0 chrX 2365038 2365101 -174609039 - AluSp/q SINE Alu -41 272 209 2056 94 0 4 chrX 2365103 2365378 -174608762 - AluSx SINE Alu -38 274 1 1823 164 0 10 chrX 2366065 2366369 -174607771 + AluJo SINE Alu 1 301 -11 300 314 0 0 chrX 2366544 2366630 -174607510 + Charlie1 DNA MER1_type 2350 2435 -326 660 256 32 97 chrX 2366694 2366952 -174607188 - Charlie1 DNA MER1_type 0 2761 2538 1591 149 13 49 chrX 2366952 2367260 -174606880 + AluJb SINE Alu 1 297 -15 660 256 32 97 chrX 2367260 2367412 -174606728 - Charlie1 DNA MER1_type -223 2538 2378 30 21 0 21 chrX 2367666 2367695 -174606445 + AT_rich Low_complexity Low_complexity 1 30 -17 2010 126 0 0 chrX 2367695 2367988 -174606152 - AluSx SINE Alu -19 293 1 30 21 0 21 chrX 2367988 2368006 -174606134 + AT_rich Low_complexity Low_complexity 30 47 0 1756 158 13 16 chrX 2368366 2368669 -174605471 - AluJo SINE Alu -2 310 9 1890 128 3 102 chrX 2368676 2369020 -174605120 - AluJo SINE Alu -2 310 1 1298 237 93 32 chrX 2370000 2370439 -174603701 - MLT1C LTR MaLR -1 466 1 806 236 146 37 chrX 2370449 2370771 -174603369 - MLT1C LTR MaLR -122 345 5 1933 137 137 34 chrX 2371058 2371373 -174602767 + MSTA LTR MaLR 1 365 -63 2519 66 0 3 chrX 2371373 2371678 -174602462 - AluY SINE Alu -7 304 1 1933 137 137 34 chrX 2371678 2371750 -174602390 + MSTA LTR MaLR 365 428 0 1082 185 15 10 chrX 2372098 2372298 -174601842 + AluJo SINE Alu 97 297 -15 222 352 0 0 chrX 2372316 2372387 -174601753 - L2 LINE L2 -1 3271 3201 1636 156 0 59 chrX 2372402 2372709 -174601431 + AluJb SINE Alu 5 293 -19 1922 132 4 0 chrX 2372925 2373197 -174600943 - AluSx SINE Alu -39 273 1 1259 164 19 0 chrX 2373199 2373412 -174600728 - AluJb SINE Alu -9 303 87 5877 138 12 38 chrX 2373416 2374192 -174599948 - L1MA5A LINE L1 0 6297 5503 1971 138 3 10 chrX 2374192 2374488 -174599652 + AluJb SINE Alu 1 294 -18 5877 138 12 38 chrX 2374488 2374544 -174599596 - L1MA5A LINE L1 -794 5503 5447 2349 76 0 7 chrX 2374544 2374834 -174599306 - AluSq SINE Alu -3 310 23 5877 138 12 38 chrX 2374834 2375054 -174599086 - L1MA5A LINE L1 -850 5447 5271 21 36 0 0 chrX 2376051 2376079 -174598061 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 0 chrX 2376085 2376379 -174597761 + AluY SINE Alu 1 294 -17 1769 170 3 26 chrX 2377029 2377340 -174596800 + AluJo SINE Alu 1 304 -8 703 180 0 50 chrX 2377737 2377876 -174596264 - FLAM_C SINE Alu -1 132 1 1515 173 3 21 chrX 2378380 2378663 -174595477 - AluJo SINE Alu -14 298 21 21 0 0 0 chrX 2378715 2378736 -174595404 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chrX 2378768 2378804 -174595336 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chrX 2379581 2379609 -174594531 + AT_rich Low_complexity Low_complexity 1 28 0 1816 153 0 19 chrX 2379793 2380100 -174594040 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 2380833 2380857 -174593283 + AT_rich Low_complexity Low_complexity 1 24 0 623 277 5 29 chrX 2381014 2381220 -174592920 - L1MB8 LINE L1 0 6178 5978 1547 110 239 146 chrX 2381220 2381529 -174592611 - Charlie3 DNA MER1_type 0 2712 2 1262 217 7 7 chrX 2381530 2381820 -174592320 - L1MB8 LINE L1 -190 5984 5695 439 255 19 9 chrX 2381689 2381855 -174592285 - L1PA13 LINE L1 -336 5825 5662 * 1257 226 100 25 chrX 2382172 2382571 -174591569 - MLT1C LTR MaLR -17 450 22 1080 212 91 39 chrX 2382599 2382929 -174591211 - MLT1C LTR MaLR -120 347 1 1892 149 38 54 chrX 2383326 2383494 -174590646 - L1MA8 LINE L1 0 6291 6122 793 160 0 0 chrX 2383494 2383619 -174590521 - FLAM_C SINE Alu -7 126 2 1892 149 38 54 chrX 2383619 2383874 -174590266 - L1MA8 LINE L1 -169 6122 5875 430 145 14 0 chrX 2383916 2383985 -174590155 + AluSg/x SINE Alu 211 280 -32 1115 197 136 15 chrX 2384002 2384266 -174589874 - Tigger3(Golem) DNA MER2_type -2733 296 1 1872 140 10 13 chrX 2384289 2384589 -174589551 - AluJo SINE Alu -9 303 5 415 218 15 30 chrX 2384653 2384786 -174589354 + (TA)n Simple_repeat Simple_repeat 1 131 0 520 216 0 22 chrX 2384791 2384972 -174589168 + (TATG)n Simple_repeat Simple_repeat 2 178 0 242 289 25 55 chrX 2385588 2385726 -174588414 + MIR3 SINE MIR 28 162 -46 318 96 22 0 chrX 2386365 2386422 -174587718 - L1M2 LINE L1 -505 5786 5724 2045 156 0 0 chrX 2386637 2386944 -174587196 + AluJb SINE Alu 1 307 -5 313 233 14 0 chrX 2386975 2387048 -174587092 - MIR SINE MIR -119 143 70 2981 160 35 28 chrX 2387062 2387444 -174586696 - L1MA4A LINE L1 -28 6275 5883 1992 115 44 10 chrX 2387444 2387740 -174586400 - AluSx SINE Alu -6 306 1 2981 160 35 28 chrX 2387740 2387932 -174586208 - L1MA4A LINE L1 -420 5883 5694 215 304 108 20 chrX 2387961 2388063 -174586077 + MER5B DNA MER1_type 6 116 -62 2180 119 0 31 chrX 2388072 2388391 -174585749 - AluSx SINE Alu -1 311 3 563 214 42 117 chrX 2388533 2388775 -174585365 - L1MC4a LINE L1 -1759 6049 5833 2437 87 7 0 chrX 2388775 2389085 -174585055 - AluSx SINE Alu 0 312 1 563 214 42 117 chrX 2389085 2389150 -174584990 - L1MC4a LINE L1 -1975 5833 5765 1646 175 11 11 chrX 2389165 2389451 -174584689 - AluJo SINE Alu -26 286 1 28 29 0 0 chrX 2390288 2390323 -174583817 + AT_rich Low_complexity Low_complexity 1 35 0 2306 91 3 7 chrX 2391459 2391757 -174582383 - AluSx SINE Alu -15 297 1 1693 195 7 3 chrX 2392200 2392492 -174581648 + AluJb SINE Alu 1 293 -19 2277 103 3 0 chrX 2392495 2392797 -174581343 + AluSq SINE Alu 1 303 -10 438 53 0 0 chrX 2393332 2393389 -174580751 + (TG)n Simple_repeat Simple_repeat 2 58 0 1951 157 3 3 chrX 2393774 2394080 -174580060 + AluJb SINE Alu 1 306 -6 753 165 31 0 chrX 2394150 2394277 -174579863 + FLAM_C SINE Alu 2 132 -1 675 148 0 9 chrX 2394590 2394698 -174579442 + U6 snRNA snRNA 1 107 0 2346 74 17 3 chrX 2395281 2395580 -174578560 + AluSx SINE Alu 1 303 -9 183 80 0 0 chrX 2396291 2396316 -174577824 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 432 0 0 0 chrX 2396895 2396943 -174577197 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 255 51 19 chrX 2397648 2397749 -174576391 - MER58A DNA MER1_type -2197 223 127 1520 189 28 7 chrX 2397749 2398040 -174576100 + AluJo SINE Alu 6 302 -10 707 255 51 19 chrX 2398040 2398154 -174575986 - MER58A DNA MER1_type -2293 127 1 228 67 0 0 chrX 2398917 2398947 -174575193 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1603 158 0 26 chrX 2398948 2399220 -174574920 - AluJo SINE Alu -32 280 16 310 185 61 21 chrX 2399510 2399855 -174574285 + (TA)n Simple_repeat Simple_repeat 1 358 0 29 0 0 0 chrX 2399873 2399902 -174574238 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chrX 2400087 2400115 -174574025 + AT_rich Low_complexity Low_complexity 1 28 0 2867 131 42 17 chrX 2400117 2400380 -174573760 - L1MA5A LINE L1 -6 6291 6036 2331 111 0 0 chrX 2400380 2400677 -174573463 + AluSg SINE Alu 1 297 -13 2867 131 42 17 chrX 2400677 2400939 -174573201 - L1MA5A LINE L1 -261 6036 5753 1847 170 0 19 chrX 2400943 2401254 -174572886 - AluJb SINE Alu -5 307 3 300 182 299 26 chrX 2401347 2401501 -174572639 - L1MB2 LINE L1 -7 6164 5969 180 0 0 0 chrX 2402869 2402889 -174571251 + (T)n Simple_repeat Simple_repeat 1 20 0 657 197 100 120 chrX 2403231 2403530 -174570610 - MER101 LTR ERV1 0 474 182 315 241 0 27 chrX 2403545 2403657 -174570483 - MER101 LTR ERV1 -186 288 180 256 294 16 32 chrX 2403774 2403900 -174570240 - MER101 LTR ERV1 -186 288 165 1120 199 3 77 chrX 2403909 2404196 -174569944 - MER101 LTR ERV1 -198 276 11 2749 39 0 3 chrX 2404447 2404759 -174569381 - AluY SINE Alu 0 311 1 33 25 0 0 chrX 2404845 2404885 -174569255 + AT_rich Low_complexity Low_complexity 1 40 0 865 160 0 0 chrX 2405054 2405179 -174568961 + AluJo SINE Alu 90 214 -98 289 126 32 42 chrX 2405210 2405305 -174568835 + (TAGA)n Simple_repeat Simple_repeat 3 96 0 1023 167 31 50 chrX 2405323 2405545 -174568595 - MER20 DNA MER1_type 0 219 2 495 307 100 28 chrX 2406228 2406707 -174567433 + L2 LINE L2 2729 3245 -68 378 258 44 107 chrX 2406770 2406933 -174567207 - L1MC4a LINE L1 -1958 5850 5713 2224 104 7 0 chrX 2406933 2407232 -174566908 + AluSq SINE Alu 1 301 -12 378 258 44 107 chrX 2407232 2407366 -174566774 - L1MC4a LINE L1 -2095 5713 5572 2177 115 0 0 chrX 2407367 2407653 -174566487 - AluJb SINE Alu -16 296 11 2154 137 83 21 chrX 2407664 2408051 -174566089 - L1MA7 LINE L1 -342 5949 5539 2533 70 0 0 chrX 2408178 2408477 -174565663 + AluSq SINE Alu 1 299 -14 2301 99 0 0 chrX 2408757 2409061 -174565079 - AluSq SINE Alu -9 304 1 4505 96 19 3 chrX 2409298 2409932 -174564208 + LTR9B LTR ERV1 1 644 0 198 0 0 0 chrX 2410050 2410072 -174564068 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1735 130 0 20 chrX 2410106 2410359 -174563781 + AluJo SINE Alu 4 251 -61 2121 89 36 30 chrX 2410359 2410656 -174563484 - LTR7 LTR ERV1 0 450 104 2583 58 0 6 chrX 2410656 2410969 -174563171 - AluY SINE Alu 0 311 1 2121 89 36 30 chrX 2410969 2411038 -174563102 - LTR7 LTR ERV1 -346 104 37 272 109 0 0 chrX 2411026 2411072 -174563068 + AluJo SINE Alu 257 302 0 * 452 183 113 35 chrX 2411087 2411202 -174562938 + MER63 DNA MER1_type 2 751 -85 2283 92 3 52 chrX 2411232 2411557 -174562583 - AluSq SINE Alu -4 309 1 2225 170 18 8 chrX 2412052 2412451 -174561689 + MER57A LTR ERV1 1 403 0 1654 149 51 14 chrX 2412659 2412934 -174561206 - AluJo SINE Alu -17 295 11 1991 131 24 0 chrX 2412953 2413243 -174560897 - AluSx SINE Alu -15 297 1 2423 81 7 0 chrX 2413308 2413606 -174560534 - AluY SINE Alu -11 300 1 2180 120 0 19 chrX 2413893 2414218 -174559922 - LTR8 LTR ERV1 -372 319 1 1914 140 3 29 chrX 2414942 2415250 -174558890 - AluJo SINE Alu -11 301 2 636 168 0 0 chrX 2415578 2415685 -174558455 - MER53 DNA DNA 0 189 83 933 194 6 0 chrX 2417126 2417286 -174556854 - Charlie3 DNA MER1_type -2546 164 4 539 157 0 0 chrX 2417671 2417760 -174556380 - MER4B LTR ERV1 -163 447 359 25 0 0 0 chrX 2417767 2417792 -174556348 + AT_rich Low_complexity Low_complexity 1 25 0 397 233 3 30 chrX 2417792 2418103 -174556037 + CT-rich Low_complexity Low_complexity 1 302 0 2056 131 10 0 chrX 2418648 2418946 -174555194 - AluJb SINE Alu -7 305 5 694 202 131 0 chrX 2419630 2419798 -174554342 - MER20 DNA MER1_type 0 219 30 2354 130 25 5 chrX 2420608 2420976 -174553164 - THE1C LTR MaLR 0 375 1 2066 158 0 0 chrX 2422171 2422542 -174551598 - AluSx SINE Alu 0 371 1 1750 197 16 35 chrX 2422674 2423044 -174551096 - MLT1A1 LTR MaLR -2 363 1 31 26 0 0 chrX 2423252 2423290 -174550850 + AT_rich Low_complexity Low_complexity 1 38 0 2333 102 0 0 chrX 2423457 2423752 -174550388 - AluSx SINE Alu -17 295 1 1790 164 0 32 chrX 2425329 2425639 -174548501 + AluJo SINE Alu 1 300 -12 1270 164 19 5 chrX 2426377 2426590 -174547550 + AluJb SINE Alu 73 288 -24 259 224 34 34 chrX 2426590 2426769 -174547371 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 30 0 0 chrX 2426775 2426808 -174547332 + AT_rich Low_complexity Low_complexity 1 33 0 253 230 13 0 chrX 2426808 2426960 -174547180 + (TA)n Simple_repeat Simple_repeat 1 154 0 417 100 86 14 chrX 2428039 2428109 -174546031 + MLT2B1 LTR ERVL 354 428 -92 767 180 33 27 chrX 2428109 2428259 -174545881 - AluJb SINE Alu -49 263 113 269 255 118 0 chrX 2428295 2428397 -174545743 + L2 LINE L2 3197 3310 -3 355 254 45 0 chrX 2428681 2428791 -174545349 - MLT1H1 LTR MaLR -12 543 429 * 438 288 8 0 chrX 2428781 2428906 -174545234 + MER20 DNA MER1_type 90 215 -4 656 125 19 10 chrX 2428995 2429099 -174545041 - U6 snRNA snRNA -2 105 1 232 320 0 48 chrX 2429187 2429312 -174544828 - MLT1H-int LTR MaLR -1616 119 1 393 287 65 51 chrX 2429315 2429532 -174544608 - MLT1H LTR MaLR -3 548 333 610 224 59 51 chrX 2429568 2429871 -174544269 + MLT1H1 LTR MaLR 243 547 -2 1495 166 121 10 chrX 2430167 2430480 -174543660 - MER7A DNA MER2_type 0 346 1 4426 121 11 2 chrX 2430517 2431145 -174542995 - MER41B LTR ERV1 0 635 2 1193 123 0 3 chrX 2431580 2431941 -174542199 + (TA)n Simple_repeat Simple_repeat 1 359 0 193 286 79 0 chrX 2432772 2432835 -174541305 - L2 LINE L2 0 3313 3246 395 143 30 48 chrX 2433299 2433467 -174540673 + (TAGA)n Simple_repeat Simple_repeat 2 166 0 454 171 22 39 chrX 2433517 2433698 -174540442 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 1597 134 28 0 chrX 2433873 2434120 -174540020 + L1MA7 LINE L1 5682 5935 -356 688 261 28 6 chrX 2434140 2434320 -174539820 - MER20 DNA MER1_type -6 213 30 807 174 0 0 chrX 2434462 2434594 -174539546 + AluJb SINE Alu 1 132 -180 1741 166 28 3 chrX 2434601 2434885 -174539255 + AluJb SINE Alu 6 296 -16 4274 110 23 2 chrX 2435035 2435655 -174538485 + MER41B LTR ERV1 1 633 -2 1960 157 0 7 chrX 2436064 2436369 -174537771 - AluJo SINE Alu -9 303 1 1969 187 7 12 chrX 2436381 2436787 -174537353 - L1MA3 LINE L1 0 6305 5902 1816 137 41 47 chrX 2436811 2437026 -174537114 - L1PB3 LINE L1 0 6154 5940 1804 163 0 7 chrX 2437026 2437315 -174536825 - AluJb SINE Alu -21 291 5 1816 137 41 47 chrX 2437315 2437442 -174536698 - L1PB3 LINE L1 -214 5940 5814 753 240 73 5 chrX 2437448 2437652 -174536488 + MER20 DNA MER1_type 1 218 -1 913 111 0 0 chrX 2437658 2437775 -174536365 + AluSp SINE Alu 1 117 -196 267 31 0 0 chrX 2438034 2438066 -174536074 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 2882 57 5 94 chrX 2438655 2438888 -174535252 - L1PA10 LINE L1 -294 5874 5696 1840 81 76 0 chrX 2438888 2439124 -174535016 - AluSq SINE Alu -59 254 1 2882 57 5 94 chrX 2439124 2439326 -174534814 - L1PA10 LINE L1 -472 5696 5478 1252 71 130 0 chrX 2439326 2439510 -174534630 + L1PA10 LINE L1 5959 6166 -2 1677 209 30 5 chrX 2439734 2440107 -174534033 + L1MB5 LINE L1 5792 6173 -1 2059 133 3 0 chrX 2440118 2440465 -174533675 + AluSx SINE Alu 1 312 0 1623 138 7 67 chrX 2440696 2440993 -174533147 + AluSx SINE Alu 5 283 -29 350 130 0 0 chrX 2441188 2441242 -174532898 - MADE1 DNA Mariner -1 79 26 218 226 0 16 chrX 2441264 2441326 -174532814 + (TA)n Simple_repeat Simple_repeat 2 62 0 34 0 0 0 chrX 2441327 2441361 -174532779 + AT_rich Low_complexity Low_complexity 1 34 0 320 140 20 0 chrX 2441459 2441509 -174532631 - MER20 DNA MER1_type -1 218 168 1025 227 31 14 chrX 2441527 2441781 -174532359 - MLT2D LTR ERVL -39 481 128 2724 88 58 21 chrX 2441794 2442226 -174531914 + LTR7 LTR ERV1 1 448 -2 4608 114 68 39 chrX 2442228 2443227 -174530913 + HERVH LTR ERV1 1 903 -6810 5328 14 2 0 chrX 2443254 2443848 -174530292 - L1PA2 LINE L1 -5 6150 5556 3454 12 5 0 chrX 2443849 2444409 -174529731 + L1PA2 LINE L1 4987 5550 -605 14831 90 11 8 chrX 2444409 2446492 -174527648 + HERVH LTR ERV1 899 2987 -4726 931 128 20 0 chrX 2446486 2446634 -174527506 + HERVH LTR ERV1 3140 3290 -4423 * 3472 111 0 6 chrX 2446624 2447129 -174527011 + HERVH LTR ERV1 3492 3993 -3720 4332 137 11 3 chrX 2447131 2447788 -174526352 + HERVH LTR ERV1 4488 5149 -2564 1420 110 23 14 chrX 2447789 2448007 -174526133 + HERVH LTR ERV1 5600 5819 -1894 * 2746 64 45 0 chrX 2448005 2448380 -174525760 + HERVH LTR ERV1 7322 7713 0 2626 99 58 21 chrX 2448380 2448812 -174525328 + LTR7 LTR ERV1 1 448 -2 321 213 8 134 chrX 2448815 2448942 -174525198 - MLT2D LTR ERVL -302 112 2 236 88 0 0 chrX 2448943 2448977 -174525163 - MLT2B2 LTR ERVL -481 34 1 228 136 0 23 chrX 2448977 2449011 -174525129 - MLT2C2 LTR ERVL -431 33 1 996 187 31 58 chrX 2449065 2449290 -174524850 + MER20 DNA MER1_type 1 219 0 24 77 0 0 chrX 2449383 2449435 -174524705 + AT_rich Low_complexity Low_complexity 1 52 0 705 161 15 8 chrX 2449517 2449647 -174524493 - MLT1A1 LTR MaLR -234 131 1 328 229 0 0 chrX 2449694 2449764 -174524376 + MER69 DNA AcHobo 2456 2525 -1 26 0 0 0 chrX 2449972 2449998 -174524142 + AT_rich Low_complexity Low_complexity 1 26 0 367 118 0 0 chrX 2450006 2450057 -174524083 - AluSx SINE Alu -7 295 245 23 0 0 0 chrX 2450057 2450080 -174524060 + AT_rich Low_complexity Low_complexity 1 23 0 1653 197 3 3 chrX 2450086 2450381 -174523759 - AluJo SINE Alu -17 295 1 430 197 0 0 chrX 2450821 2450892 -174523248 - MER81 DNA DNA -21 93 23 2657 165 0 52 chrX 2450974 2451080 -174523060 - MER66A LTR ERV1 0 478 368 1893 99 4 0 chrX 2451080 2451322 -174522818 - AluSx SINE Alu -59 253 11 2657 165 0 52 chrX 2451322 2451719 -174522421 - MER66A LTR ERV1 -110 368 1 683 214 35 23 chrX 2452042 2452215 -174521925 - MER20 DNA MER1_type -26 193 19 258 32 0 0 chrX 2452572 2452603 -174521537 + (GA)n Simple_repeat Simple_repeat 1 31 0 2214 102 7 0 chrX 2453683 2453976 -174520164 - AluSx SINE Alu -17 295 1 907 131 0 65 chrX 2454143 2454296 -174519844 - FLAM_C SINE Alu 0 143 1 913 112 176 70 chrX 2454676 2454863 -174519277 + AluJo SINE Alu 85 291 -21 1008 112 0 17 chrX 2454952 2455131 -174519009 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 180 111 0 0 chrX 2456064 2456091 -174518049 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 1793 167 0 17 chrX 2456549 2456843 -174517297 - AluJo SINE Alu -11 301 13 2080 134 0 10 chrX 2456857 2457170 -174516970 - AluJb SINE Alu -2 310 1 915 172 7 0 chrX 2457174 2457325 -174516815 - MLT1A1 LTR MaLR -213 152 1 1741 157 0 38 chrX 2457942 2458102 -174516038 - AluJo SINE Alu -24 288 123 225 0 0 0 chrX 2458102 2458127 -174516013 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 243 0 0 0 chrX 2458126 2458153 -174515987 + (GA)n Simple_repeat Simple_repeat 2 28 0 1741 157 0 38 chrX 2458127 2458153 -174515987 - AluJo SINE Alu -189 123 98 2252 90 0 0 chrX 2458153 2458430 -174515710 - AluY SINE Alu -34 277 1 1741 157 0 38 chrX 2458430 2458555 -174515585 - AluJo SINE Alu -214 98 13 2778 83 14 3 chrX 2459295 2459655 -174514485 + THE1B LTR MaLR 1 364 0 260 269 215 0 chrX 2659944 2660074 -174314066 + MLT2B1 LTR ERVL 5 162 -358 456 222 0 0 chrX 2660084 2660174 -174313966 - L1M2 LINE L1 -724 5588 5499 183 129 0 0 chrX 2660232 2660263 -174313877 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 152 0 0 chrX 2660326 2660372 -174313768 + (TATG)n Simple_repeat Simple_repeat 3 48 0 1777 175 0 20 chrX 2660373 2660670 -174313470 - AluJo SINE Alu -21 291 1 408 190 131 73 chrX 2660677 2660803 -174313337 - MLT1D LTR MaLR -329 176 43 2015 148 38 40 chrX 2660803 2661295 -174312845 + LTR1B LTR ERV1 1 525 -301 992 338 113 21 chrX 2661406 2662087 -174312053 + L2 LINE L2 855 1598 -1716 1128 167 57 33 chrX 2662179 2662245 -174311895 + MLT1A1 LTR MaLR 1 64 -301 2114 158 25 0 chrX 2662245 2662599 -174311541 - THE1B LTR MaLR 0 364 2 1128 167 57 33 chrX 2662599 2662777 -174311363 + MLT1A1 LTR MaLR 64 251 -114 288 146 0 73 chrX 2662881 2663004 -174311136 + (TATATG)n Simple_repeat Simple_repeat 5 118 0 301 184 0 126 chrX 2663010 2663113 -174311027 - L1MC4 LINE L1 -1339 6703 6614 * 317 270 11 11 chrX 2663025 2663114 -174311026 + L1MC4 LINE L1 6614 6702 -1340 1524 200 21 14 chrX 2663146 2663514 -174310626 - MER47B DNA MER2_type 0 418 1 312 200 13 27 chrX 2663542 2663648 -174310492 + (TA)n Simple_repeat Simple_repeat 1 106 -42 1832 127 66 33 chrX 2663648 2664011 -174310129 + THE1C LTR MaLR 1 375 0 312 200 13 27 chrX 2664011 2664054 -174310086 + (TA)n Simple_repeat Simple_repeat 106 148 0 1519 183 23 17 chrX 2664103 2664404 -174309736 - AluJb SINE Alu -9 303 1 333 254 15 15 chrX 2664432 2664566 -174309574 + (TA)n Simple_repeat Simple_repeat 2 135 0 614 322 152 39 chrX 2664827 2665340 -174308800 + L2 LINE L2 1720 2290 -1024 2404 142 22 52 chrX 2665349 2665793 -174308347 + Tigger2a DNA MER2_type 1 431 -3 301 265 147 5 chrX 2665869 2666080 -174308060 - L1M4 LINE L1 -3194 2952 2712 1896 138 3 22 chrX 2666084 2666433 -174307707 - MER4A LTR ERV1 -3 661 261 572 134 21 10 chrX 2666433 2666530 -174307610 - MER4A LTR ERV1 -566 98 1 311 265 56 47 chrX 2666530 2666745 -174307395 - L1M4 LINE L1 -3432 2714 2498 341 123 18 0 chrX 2667747 2667804 -174306336 + Tigger3(Golem) DNA MER2_type 2916 2973 -56 364 138 0 0 chrX 2667921 2667979 -174306161 + Tigger3(Golem) DNA MER2_type 2917 2974 -55 24 0 0 0 chrX 2668003 2668027 -174306113 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 2668538 2668560 -174305580 + AT_rich Low_complexity Low_complexity 1 22 0 2057 113 23 13 chrX 2668747 2669056 -174305084 + AluSq SINE Alu 1 312 -1 223 170 55 24 chrX 2670029 2670197 -174303943 + (TAGA)n Simple_repeat Simple_repeat 1 173 0 248 217 63 21 chrX 2670249 2670392 -174303748 + (TAGA)n Simple_repeat Simple_repeat 4 152 0 301 194 51 40 chrX 2670427 2670602 -174303538 + (TAGA)n Simple_repeat Simple_repeat 4 180 0 369 202 0 0 chrX 2670814 2670888 -174303252 - MLT1D LTR MaLR -327 178 111 508 277 31 6 chrX 2670982 2671141 -174302999 - MIR SINE MIR 0 262 100 739 218 7 0 chrX 2671931 2672165 -174301975 - AluJb SINE Alu 0 374 140 2206 129 0 0 chrX 2672170 2672472 -174301668 - AluSx SINE Alu -9 303 2 2376 107 0 0 chrX 2672478 2672787 -174301353 - AluSq SINE Alu -4 309 1 1844 159 10 0 chrX 2673286 2673576 -174300564 - AluJo SINE Alu -19 293 1 1923 164 31 82 chrX 2673730 2674181 -174299959 - MSTC LTR MaLR 0 428 1 1510 175 133 6 chrX 2674329 2674660 -174299480 + MSTA LTR MaLR 1 373 -55 262 312 168 70 chrX 2674788 2675406 -174298734 - L2 LINE L2 -2634 680 2 979 261 17 17 chrX 2676564 2676909 -174297231 + L1MA9 LINE L1 5943 6287 -25 183 222 0 0 chrX 2676931 2676976 -174297164 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 83 0 3 chrX 2677957 2678257 -174295883 - AluSq SINE Alu -14 299 1 1657 161 7 4 chrX 2679078 2679358 -174294782 - AluJo SINE Alu -10 302 22 488 181 14 21 chrX 2679492 2679636 -174294504 + CT-rich Low_complexity Low_complexity 3 145 0 1499 215 13 0 chrX 2679839 2680353 -174293787 - AluJb SINE Alu 0 518 1 185 50 0 75 chrX 2680353 2680365 -174293775 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 2680661 2680683 -174293457 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 2680961 2680985 -174293155 + AT_rich Low_complexity Low_complexity 1 24 0 1073 262 115 49 chrX 2681709 2682136 -174292004 - LTR40a LTR ERVL 0 519 65 1847 168 0 7 chrX 2682183 2682505 -174291635 - AluJb SINE Alu 0 312 1 194 255 108 39 chrX 2683238 2683340 -174290800 + MIR SINE MIR 54 162 -100 673 216 211 15 chrX 2683360 2683559 -174290581 + MLT1A1 LTR MaLR 1 238 -127 1078 115 0 0 chrX 2683666 2683822 -174290318 + AluSp/q SINE Alu 156 311 -2 349 186 70 39 chrX 2683844 2684000 -174290140 + Charlie1 DNA MER1_type 2572 2732 -29 326 153 36 29 chrX 2684022 2684159 -174289981 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 2684228 2684525 -174289615 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 2684558 2684797 -174289343 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 2685069 2685583 -174288557 + GA-rich Low_complexity Low_complexity 1 508 0 212 240 42 21 chrX 2686866 2686962 -174287178 + (CATATA)n Simple_repeat Simple_repeat 2 99 0 28 0 0 0 chrX 2687351 2687379 -174286761 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 2687866 2687963 -174286177 + MER4A LTR ERV1 1 98 -566 1524 164 184 40 chrX 2687963 2688316 -174285824 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 2688324 2688365 -174285775 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 2689262 2689405 -174284735 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 2689435 2689457 -174284683 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 2689530 2689908 -174284232 + Tigger2a DNA MER2_type 1 380 -54 2779 197 12 25 chrX 2689910 2690473 -174283667 + L1PA16 LINE L1 5607 6162 -4 2340 118 25 6 chrX 2690996 2691353 -174282787 + THE1B LTR MaLR 1 364 0 1159 241 25 97 chrX 2691436 2691991 -174282149 - L1ME3A LINE L1 -5 6165 5651 808 117 7 36 chrX 2692671 2692808 -174281332 + THE1C LTR MaLR 1 133 -242 910 213 28 21 chrX 2692918 2693156 -174280984 + LTR1B LTR ERV1 545 826 0 185 350 8 51 chrX 2693273 2693390 -174280750 + L2 LINE L2 2940 3051 -221 916 190 27 36 chrX 2694429 2694650 -174279490 + MER20 DNA MER1_type 1 219 0 180 0 0 0 chrX 2694663 2694683 -174279457 + (T)n Simple_repeat Simple_repeat 1 20 0 3445 172 120 33 chrX 2695225 2695985 -174278155 + LTR1B LTR ERV1 1 826 0 231 145 66 0 chrX 2696541 2696617 -174277523 + (TATAG)n Simple_repeat Simple_repeat 5 85 0 253 161 18 18 chrX 2696809 2696865 -174277275 + L1MA5A LINE L1 6034 6089 -208 1448 191 70 29 chrX 2696866 2697521 -174276619 + LTR8A LTR ERV1 1 724 -3 1107 96 71 0 chrX 2697521 2697719 -174276421 + L1MA5A LINE L1 6084 6295 -2 228 361 56 21 chrX 2697848 2697992 -174276148 - L2 LINE L2 -189 3083 2935 282 206 22 65 chrX 2698822 2699006 -174275134 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 * 295 178 74 22 chrX 2698969 2699104 -174275036 + (TA)n Simple_repeat Simple_repeat 1 142 0 304 239 60 12 chrX 2699204 2699371 -174274769 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 * 405 175 33 55 chrX 2699354 2699537 -174274603 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 323 86 63 46 chrX 2699610 2699784 -174274356 + (TA)n Simple_repeat Simple_repeat 2 178 0 234 326 167 60 chrX 2700875 2701391 -174272749 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 2702646 2702744 -174271396 + (TA)n Simple_repeat Simple_repeat 1 101 0 324 0 0 0 chrX 2702794 2702830 -174271310 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 2702831 2702948 -174271192 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 2702948 2703260 -174270880 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 2703260 2703416 -174270724 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 2703471 2703635 -174270505 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 2703655 2703832 -174270308 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 2703899 2703939 -174270201 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 2705600 2705626 -174268514 + AT_rich Low_complexity Low_complexity 1 26 0 521 206 16 24 chrX 2706506 2706723 -174267417 + CT-rich Low_complexity Low_complexity 1 218 -314 1521 197 7 10 chrX 2706723 2707013 -174267127 - AluJb SINE Alu -23 289 1 521 206 16 24 chrX 2707013 2707043 -174267097 + CT-rich Low_complexity Low_complexity 218 532 0 790 75 47 31 chrX 2707768 2708024 -174266116 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 2708531 2708566 -174265574 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 2708682 2709255 -174264885 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 2709457 2709614 -174264526 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 2709621 2709986 -174264154 - THE1B LTR MaLR 0 364 1 2164 145 0 0 chrX 2710383 2710680 -174263460 + AluSx SINE Alu 1 297 -15 1979 143 0 16 chrX 2711263 2711571 -174262569 - AluSx SINE Alu -9 303 1 2349 107 0 0 chrX 2712193 2712501 -174261639 - AluSx SINE Alu -4 308 1 330 45 0 0 chrX 2713757 2713801 -174260339 + U5 snRNA snRNA 1 44 -72 501 66 0 13 chrX 2714050 2714126 -174260014 + L1PB3 LINE L1 6073 6147 -7 1291 191 46 8 chrX 2714687 2714928 -174259212 - AluJo SINE Alu -61 251 2 185 105 0 26 chrX 2715039 2715077 -174259063 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 334 167 69 35 chrX 2715099 2715243 -174258897 + (TAGA)n Simple_repeat Simple_repeat 2 150 0 21 0 0 0 chrX 2715897 2715918 -174258222 + AT_rich Low_complexity Low_complexity 1 21 0 462 291 172 28 chrX 2715962 2716399 -174257741 + L1ME3 LINE L1 3901 4400 -1746 311 252 16 8 chrX 2716424 2716547 -174257593 + L1ME3 LINE L1 4534 4657 -1489 30 0 0 0 chrX 2716798 2716828 -174257312 + AT_rich Low_complexity Low_complexity 1 30 0 2132 136 0 0 chrX 2716955 2717256 -174256884 + AluSx SINE Alu 1 304 -8 324 0 0 0 chrX 2717256 2717292 -174256848 + (TA)n Simple_repeat Simple_repeat 2 37 0 369 287 27 18 chrX 2718086 2718309 -174255831 + L1ME3 LINE L1 5725 5949 -213 3103 232 33 33 chrX 2718450 2719414 -174254726 + MER45B DNA AcHobo 1 964 -76 1133 214 0 0 chrX 2719420 2719626 -174254514 - MER58A DNA MER1_type -6 218 13 337 166 63 46 chrX 2722971 2723146 -174250994 + (TA)n Simple_repeat Simple_repeat 2 179 0 247 107 67 0 chrX 2723162 2723237 -174250903 + (TA)n Simple_repeat Simple_repeat 2 81 0 545 225 12 0 chrX 2723276 2723436 -174250704 + (CATA)n Simple_repeat Simple_repeat 1 162 0 2376 223 25 14 chrX 2723895 2724460 -174249680 - MER7C DNA MER2_type 0 602 32 269 179 30 30 chrX 2724525 2724592 -174249548 - MLT1C LTR MaLR 0 467 401 1164 149 0 0 chrX 2724595 2724763 -174249377 + AluSg/x SINE Alu 137 304 -8 539 275 25 35 chrX 2724783 2724983 -174249157 - MLT1C LTR MaLR -176 291 94 1103 247 32 23 chrX 2725380 2725733 -174248407 - MER87 LTR ERV1 -9 547 174 552 125 0 0 chrX 2725759 2725839 -174248301 + AluS SINE Alu 1 80 -233 338 106 0 0 chrX 2725840 2725887 -174248253 - Alu SINE Alu -254 47 1 1821 176 0 3 chrX 2725887 2726183 -174247957 - AluJo SINE Alu -12 300 6 699 210 7 0 chrX 2726192 2726335 -174247805 - L1PB4 LINE L1 -3 6153 6010 2314 124 65 10 chrX 2726359 2726762 -174247378 - MSTA LTR MaLR 0 428 4 2198 113 0 7 chrX 2728309 2728610 -174245530 + AluSx SINE Alu 1 299 -13 1777 171 7 0 chrX 2728754 2729052 -174245088 + AluJb SINE Alu 1 300 -12 631 254 86 62 chrX 2729259 2729644 -174244496 + L1ME3A LINE L1 5714 6107 -63 2303 92 0 7 chrX 2730190 2730484 -174243656 + AluSx SINE Alu 1 292 -20 228 35 0 0 chrX 2730544 2730573 -174243567 + (CA)n Simple_repeat Simple_repeat 1 29 0 2370 75 3 3 chrX 2730933 2731228 -174242912 + AluSp SINE Alu 1 295 -18 255 355 70 25 chrX 2734097 2734297 -174239843 + L2 LINE L2 223 431 -2883 3804 141 25 45 chrX 2735977 2736760 -174237380 + L1PB4 LINE L1 5386 6153 -3 2218 102 3 0 chrX 2736845 2737156 -174236984 - AluSp SINE Alu 0 312 1 242 29 29 0 chrX 2737569 2737604 -174236536 + (TG)n Simple_repeat Simple_repeat 1 36 0 3885 229 20 28 chrX 2737608 2738414 -174235726 - L1MC3 LINE L1 -935 6850 6040 1571 177 35 41 chrX 2738414 2738759 -174235381 - MER2 DNA MER2_type 0 344 2 3885 229 20 28 chrX 2738759 2739003 -174235137 - L1MC3 LINE L1 -1745 6040 5806 1006 231 104 24 chrX 2739003 2739174 -174234966 - MLT1A1 LTR MaLR 0 365 209 180 0 0 0 chrX 2739174 2739194 -174234946 + (GA)n Simple_repeat Simple_repeat 2 21 0 1006 231 104 24 chrX 2739194 2739360 -174234780 - MLT1A1 LTR MaLR -156 209 1 3885 229 20 28 chrX 2739360 2739397 -174234743 - L1MC3 LINE L1 -1979 5806 5770 1118 199 4 17 chrX 2739861 2740097 -174234043 - MLT1D LTR MaLR -3 502 270 207 0 0 0 chrX 2740149 2740172 -174233968 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1159 228 28 53 chrX 2740179 2740464 -174233676 - AluJo SINE Alu -34 278 1 681 262 26 47 chrX 2740469 2740721 -174233419 - MLT1D LTR MaLR -295 210 18 557 214 38 13 chrX 2740780 2740939 -174233201 + L1MA9 LINE L1 6112 6274 -38 1192 225 8 19 chrX 2740953 2741215 -174232925 + AluJo SINE Alu 47 305 -7 256 339 85 28 chrX 2743163 2743340 -174230800 + MER5A DNA MER1_type 1 187 -2 186 43 0 0 chrX 2743415 2743438 -174230702 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1351 218 39 105 chrX 2744119 2744632 -174229508 - LTR8 LTR ERV1 0 691 213 602 152 0 9 chrX 2744708 2744813 -174229327 + LTR24B LTR ERV1 1 104 -472 339 226 19 19 chrX 2744858 2744964 -174229176 + L1MA10 LINE L1 6228 6333 -1 2735 180 21 16 chrX 2745017 2745583 -174228557 - LTR24B LTR ERV1 -7 569 1 2079 191 5 2 chrX 2745583 2745988 -174228152 + LTR49 LTR ERV1 30 435 -160 232 130 148 19 chrX 2745974 2746028 -174228112 + LTR48 LTR ERV1 607 667 -120 * 2654 184 39 66 chrX 2746065 2746195 -174227945 + LTR8A LTR ERV1 34 166 -561 1832 163 3 7 chrX 2746195 2746495 -174227645 - AluJb SINE Alu -9 303 5 2654 184 39 66 chrX 2746495 2747077 -174227063 + LTR8A LTR ERV1 166 727 0 462 125 12 12 chrX 2747086 2747166 -174226974 + LTR49 LTR ERV1 516 595 0 1208 210 64 42 chrX 2747244 2747432 -174226708 + MLT1A2 LTR MaLR 1 202 -172 4600 119 16 13 chrX 2747432 2748121 -174226019 + LTR8 LTR ERV1 1 691 0 1208 210 64 42 chrX 2748121 2748289 -174225851 + MLT1A2 LTR MaLR 202 365 -9 941 246 81 44 chrX 2748411 2748974 -174225166 - LTR24B LTR ERV1 -7 569 1 243 152 0 0 chrX 2749081 2749127 -174225013 + (TG)n Simple_repeat Simple_repeat 1 46 0 2000 153 44 8 chrX 2749228 2749683 -174224457 - MER61E LTR ERV1 -40 461 1 1573 185 92 3 chrX 2749886 2750221 -174223919 - MLT1A1 LTR MaLR 0 365 1 1566 206 0 3 chrX 2750704 2750986 -174223154 - AluJb SINE Alu -31 281 1 1921 134 7 7 chrX 2752403 2752693 -174221447 + AluSx SINE Alu 1 290 -22 433 236 236 78 chrX 2752726 2753261 -174220879 - MER92B LTR ERV1 -8 628 10 361 21 0 0 chrX 2753429 2753476 -174220664 - MER41B LTR ERV1 -108 527 481 2947 150 35 4 chrX 2753640 2754159 -174219981 + LTR39 LTR ERV1 1 535 -248 3615 104 11 11 chrX 2754159 2754718 -174219422 - PABL_A LTR ERV1 0 660 102 1248 134 49 45 chrX 2754826 2755072 -174219068 + THE1B LTR MaLR 118 364 0 299 313 77 15 chrX 2755148 2755343 -174218797 - ERVL LTR ERVL -1545 4219 4013 222 214 0 0 chrX 2756725 2756767 -174217373 + GA-rich Low_complexity Low_complexity 2 43 0 2226 104 14 0 chrX 2756875 2757164 -174216976 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 2757413 2757448 -174216692 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 2757448 2757624 -174216516 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 2757635 2757872 -174216268 + GA-rich Low_complexity Low_complexity 1 242 0 1376 91 11 0 chrX 2759307 2759483 -174214657 + AluSx SINE Alu 2 179 -133 959 62 78 0 chrX 2759563 2759692 -174214448 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 2759922 2759945 -174214195 + AT_rich Low_complexity Low_complexity 1 23 0 263 312 59 72 chrX 2760751 2761112 -174213028 - L2 LINE L2 0 3313 2946 2113 141 0 0 chrX 2761264 2761562 -174212578 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 2762393 2762457 -174211683 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 2762781 2762834 -174211306 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 2763009 2763327 -174210813 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 2763870 2763894 -174210246 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 2763894 2764255 -174209885 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 2764255 2764412 -174209728 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 2764484 2764754 -174209386 + L2 LINE L2 969 1218 -2096 2239 149 3 0 chrX 2764819 2765187 -174208953 - L1PB4 LINE L1 -6 6150 5782 1026 92 17 11 chrX 2765202 2765376 -174208764 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 2000 143 0 4 chrX 2765376 2765656 -174208484 - AluSx SINE Alu -33 279 1 664 208 0 34 chrX 2765656 2765805 -174208335 - FRAM SINE Alu -21 155 12 237 65 0 0 chrX 2765827 2765858 -174208282 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6399 197 10 26 chrX 2765861 2766550 -174207590 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 2766550 2766850 -174207290 - AluY SINE Alu -16 295 1 6399 197 10 26 chrX 2766850 2767021 -174207119 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 2767021 2767348 -174206792 - AluSx SINE Alu 0 312 1 6399 197 10 26 chrX 2767348 2768810 -174205330 - L1PA15 LINE L1 -875 5290 3882 2154 84 7 10 chrX 2768950 2769246 -174204894 - AluY SINE Alu -14 297 3 1915 157 0 25 chrX 2769360 2769679 -174204461 + AluJo SINE Alu 1 311 -1 429 310 74 77 chrX 2769838 2770202 -174203938 + L2 LINE L2 1970 2332 -982 1607 178 20 26 chrX 2770664 2771046 -174203094 + L1MB3 LINE L1 5659 5998 -185 404 181 29 3 chrX 2771017 2771111 -174203029 + L1MB3 LINE L1 6060 6143 -28 * 1509 205 0 35 chrX 2771114 2771402 -174202738 + AluJo SINE Alu 7 284 -28 23 33 0 0 chrX 2771449 2771479 -174202661 + AT_rich Low_complexity Low_complexity 1 30 0 413 370 31 43 chrX 2771535 2771884 -174202256 + L2 LINE L2 2570 2914 -400 2085 129 24 12 chrX 2772001 2772342 -174201798 + MLT1A1 LTR MaLR 1 345 -20 1973 120 3 17 chrX 2772404 2772704 -174201436 - AluSg SINE Alu -14 296 1 1630 164 58 0 chrX 2774164 2774438 -174199702 + AluJb SINE Alu 1 290 -22 1278 173 0 18 chrX 2775538 2775764 -174198376 + AluJo SINE Alu 83 304 -8 2260 118 0 0 chrX 2775803 2776100 -174198040 + AluSx SINE Alu 1 297 -15 327 200 0 15 chrX 2776168 2776233 -174197907 - MLT1E2 LTR MaLR -5 621 558 973 156 0 0 chrX 2776233 2776374 -174197766 + FRAM SINE Alu 20 160 -16 324 186 0 14 chrX 2776381 2776451 -174197689 - MLT1B LTR MaLR -67 438 370 2486 180 39 34 chrX 2776451 2776608 -174197532 - L1MB3 LINE L1 -56 6127 5972 4969 76 8 13 chrX 2776608 2777279 -174196861 + PABL_B LTR ERV1 1 667 0 2486 180 39 34 chrX 2777279 2777368 -174196772 - L1MB3 LINE L1 -211 5972 5885 2102 177 18 0 chrX 2777368 2777764 -174196376 + MER57A LTR ERV1 1 403 0 2486 180 39 34 chrX 2777764 2778082 -174196058 - L1MB3 LINE L1 -298 5885 5559 2050 98 0 4 chrX 2778183 2778449 -174195691 - AluSq SINE Alu -48 265 1 1631 184 0 27 chrX 2778466 2778760 -174195380 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 2778762 2778938 -174195202 - MLT1B LTR MaLR -213 177 1 1167 136 5 35 chrX 2779693 2779916 -174194224 - AluJo SINE Alu 0 306 90 1828 179 0 0 chrX 2780079 2780403 -174193737 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 2780413 2780584 -174193556 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 2780627 2780811 -174193329 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 2780812 2781282 -174192858 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 2781283 2781304 -174192836 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 2781559 2781694 -174192446 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 2782716 2783016 -174191124 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 2784341 2784383 -174189757 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 2784493 2784631 -174189509 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 2785582 2785629 -174188511 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 2785889 2785919 -174188221 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 2786698 2786754 -174187386 + L1MA9 LINE L1 5943 5998 -191 1160 194 48 39 chrX 2786828 2786988 -174187152 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 2786988 2787039 -174187101 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 2787039 2787059 -174187081 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 2787059 2787682 -174186458 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 2787682 2787810 -174186330 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 2788357 2788380 -174185760 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 2788490 2788727 -174185413 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 2788765 2789082 -174185058 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 2789105 2789259 -174184881 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 323 179 8 12 chrX 2789267 2789390 -174184750 - Tigger2 DNA MER2_type 0 2718 2554 * 772 208 19 51 chrX 2789389 2789605 -174184535 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 2790154 2790421 -174183719 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 2790917 2791042 -174183098 + FLAM_A SINE Alu 16 142 0 334 267 159 11 chrX 2791112 2791288 -174182852 + L1ME3A LINE L1 5311 5512 -650 1814 179 0 0 chrX 2791321 2791633 -174182507 + AluJo SINE Alu 1 312 0 470 308 77 15 chrX 2791638 2791911 -174182229 + L1ME3A LINE L1 5594 5883 -287 2539 59 3 0 chrX 2791918 2792223 -174181917 + AluY SINE Alu 1 306 -5 236 264 33 41 chrX 2792267 2792388 -174181752 + L1ME3A LINE L1 6046 6165 -5 2272 88 3 7 chrX 2792826 2793131 -174181009 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795133 2795529 -174178611 - L1PA16 LINE L1 -45 6121 5688 2377 90 10 0 chrX 2795529 2795830 -174178310 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 2795830 2795876 -174178264 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 2795901 2795959 -174178181 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 2796808 2796916 -174177224 - AluJb SINE Alu -23 289 182 25 0 0 0 chrX 2796927 2796952 -174177188 + AT_rich Low_complexity Low_complexity 1 25 0 729 160 8 0 chrX 2797015 2797140 -174177000 + MER57A LTR ERV1 2 127 -276 269 239 11 54 chrX 2797304 2797396 -174176744 + (CATA)n Simple_repeat Simple_repeat 4 91 0 236 322 0 0 chrX 2797396 2797486 -174176654 - L1MC4 LINE L1 -1339 6703 6614 346 194 0 60 chrX 2797491 2797814 -174176326 + (TA)n Simple_repeat Simple_repeat 1 303 0 219 226 9 17 chrX 2797852 2797905 -174176235 + (TA)n Simple_repeat Simple_repeat 1 53 -61 2601 131 5 38 chrX 2797905 2798354 -174175786 - Tigger2a DNA MER2_type 0 434 1 219 226 9 17 chrX 2798354 2798415 -174175725 + (TA)n Simple_repeat Simple_repeat 53 114 0 282 179 0 0 chrX 2798851 2798907 -174175233 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 89 0 0 chrX 2799096 2799152 -174174988 + AT_rich Low_complexity Low_complexity 1 56 0 370 256 24 18 chrX 2799245 2799409 -174174731 + (TA)n Simple_repeat Simple_repeat 1 165 0 341 273 16 44 chrX 2799348 2799531 -174174609 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 298 275 158 18 chrX 2800057 2800228 -174173912 - MIR SINE MIR -40 222 28 2198 105 7 0 chrX 2800601 2800896 -174173244 - AluSx SINE Alu -15 297 1 300 27 0 0 chrX 2801346 2801383 -174172757 + (CA)n Simple_repeat Simple_repeat 2 38 0 1508 170 11 11 chrX 2801413 2801719 -174172421 - AluSx SINE Alu 0 306 1 400 122 22 78 chrX 2801823 2802003 -174172137 + (TTATA)n Simple_repeat Simple_repeat 1 170 0 27 49 0 0 chrX 2802009 2802050 -174172090 + AT_rich Low_complexity Low_complexity 1 41 0 219 200 29 0 chrX 2802115 2802185 -174171955 + (TA)n Simple_repeat Simple_repeat 1 72 0 35 54 0 0 chrX 2802185 2802241 -174171899 + AT_rich Low_complexity Low_complexity 1 56 0 475 260 94 43 chrX 2802400 2802432 -174171708 - MLT1G LTR MaLR -2 588 559 1376 193 128 21 chrX 2802432 2802815 -174171325 - MSTB LTR MaLR 0 426 3 475 260 94 43 chrX 2802815 2803017 -174171123 - MLT1G LTR MaLR -31 559 342 262 245 170 68 chrX 2803010 2803157 -174170983 - MLT1G LTR MaLR -332 223 62 * 1636 175 3 29 chrX 2803158 2803466 -174170674 - AluJo SINE Alu -7 305 6 1675 177 3 23 chrX 2804028 2804333 -174169807 - AluJb SINE Alu -13 299 1 568 0 65 0 chrX 2805099 2805176 -174168964 + (TTTTA)n Simple_repeat Simple_repeat 2 83 0 1596 175 0 34 chrX 2805178 2805470 -174168670 - AluJo SINE Alu -30 282 1 209 222 0 0 chrX 2805509 2805554 -174168586 + MIR SINE MIR 218 262 0 22 0 0 0 chrX 2805705 2805727 -174168413 + AT_rich Low_complexity Low_complexity 1 22 0 2137 136 21 42 chrX 2806492 2806874 -174167266 - THE1C LTR MaLR -1 374 1 223 236 0 0 chrX 2807165 2807220 -174166920 + (TG)n Simple_repeat Simple_repeat 2 56 0 262 333 14 14 chrX 2808197 2808344 -174165796 - MIR3 SINE MIR -11 197 51 269 116 23 0 chrX 2808865 2808908 -174165232 + MLT1D LTR MaLR 6 49 -456 253 213 43 0 chrX 2808909 2808956 -174165184 + MLT1D LTR MaLR 1 49 -456 261 163 23 0 chrX 2808963 2809006 -174165134 + MLT1D LTR MaLR 7 50 -455 285 140 40 40 chrX 2809007 2809057 -174165083 + MLT1D LTR MaLR 1 50 -455 308 143 20 0 chrX 2809058 2809107 -174165033 + MLT1D LTR MaLR 1 50 -455 298 189 19 0 chrX 2809108 2809161 -174164979 + MLT1D LTR MaLR 1 54 -451 255 167 24 0 chrX 2809154 2809196 -174164944 + MLT1D LTR MaLR 8 50 -455 * 285 116 47 0 chrX 2809197 2809240 -174164900 + MLT1D LTR MaLR 1 45 -460 263 240 20 0 chrX 2809247 2809297 -174164843 + MLT1D LTR MaLR 1 51 -454 300 213 107 0 chrX 2809297 2809372 -174164768 + MLT1D LTR MaLR 1 83 -422 1691 222 96 14 chrX 2809474 2809818 -174164322 + MLT1D LTR MaLR 43 430 -75 3028 93 7 0 chrX 2809818 2810236 -174163904 - L1PA13 LINE L1 0 6163 5743 1691 222 96 14 chrX 2810236 2810319 -174163821 + MLT1D LTR MaLR 430 505 0 476 191 44 7 chrX 2810925 2811061 -174163079 + MER96B DNA MER1_type? 81 221 -196 24 0 0 0 chrX 2811159 2811183 -174162957 + AT_rich Low_complexity Low_complexity 1 24 0 1573 163 0 23 chrX 2811186 2811410 -174162730 - AluSx SINE Alu -53 259 40 5156 76 3 39 chrX 2811410 2812124 -174162016 + LTR12 LTR ERV1 1 688 0 1573 163 0 23 chrX 2812124 2812157 -174161983 - AluSx SINE Alu -272 40 8 2034 212 47 53 chrX 2812161 2812556 -174161584 - L1MB7 LINE L1 -69 6115 5724 1406 33 33 0 chrX 2812556 2812738 -174161402 - L1MA1 LINE L1 -4 6298 6111 2034 212 47 53 chrX 2812738 2813002 -174161138 - L1MB7 LINE L1 -460 5724 5460 233 167 0 0 chrX 2813048 2813096 -174161044 - L1M4c LINE L1 -3948 2698 2651 1542 232 64 127 chrX 2813164 2814247 -174159893 - L1M4c LINE L1 -5512 1030 16 1657 201 3 23 chrX 2815204 2815513 -174158627 + AluJb SINE Alu 1 303 -9 505 226 34 45 chrX 2816041 2816218 -174157922 + MER96B DNA MER1_type? 1 175 -242 2559 52 3 0 chrX 2816289 2816596 -174157544 - AluY SINE Alu -3 308 1 961 245 21 10 chrX 2816759 2817117 -174157023 + MLT1B LTR MaLR 1 343 -124 911 261 26 15 chrX 2817121 2817393 -174156747 + MLT1C LTR MaLR 193 467 0 1599 155 143 103 chrX 2818257 2818753 -174155387 - L1MB3 LINE L1 -7 6176 5661 572 158 18 26 chrX 2818753 2818849 -174155291 - AluJo/FRAM SINE Alu 0 312 216 1478 156 3 90 chrX 2818849 2819150 -174154990 - AluJb SINE Alu -37 275 1 572 158 18 26 chrX 2819150 2819167 -174154973 - AluJo/FRAM SINE Alu -96 216 200 253 173 19 0 chrX 2819167 2819219 -174154921 - L1MB3 LINE L1 -647 5658 5606 369 119 104 0 chrX 2819219 2819286 -174154854 - MADE1 DNA Mariner 0 80 7 791 261 20 5 chrX 2819617 2819820 -174154320 - MER58A DNA MER1_type 0 224 19 807 204 91 72 chrX 2820163 2820570 -174153570 - MLT2B1 LTR ERVL 0 520 1 1274 84 6 12 chrX 2820606 2820772 -174153368 - AluSp SINE Alu -16 297 133 950 119 34 17 chrX 2820876 2821053 -174153087 - AluSq SINE Alu -129 184 5 1466 185 78 37 chrX 2821132 2821515 -174152625 + LTR2B LTR ERV1 34 432 -58 392 329 117 49 chrX 2821956 2822953 -174151187 - L1 LINE L1 -942 5204 4128 318 106 0 0 chrX 2823033 2823080 -174151060 + (TA)n Simple_repeat Simple_repeat 2 48 0 456 213 110 55 chrX 2823340 2823504 -174150636 - MER58B DNA MER1_type -1 340 168 1014 176 0 6 chrX 2824614 2824773 -174149367 - AluJb SINE Alu -26 286 129 833 166 11 17 chrX 2825016 2825338 -174148802 + GA-rich Low_complexity Low_complexity 1 320 0 249 263 13 0 chrX 2826675 2826751 -174147389 - L1MC3 LINE L1 -304 7481 7405 239 116 47 0 chrX 2826778 2826821 -174147319 + MER4A LTR ERV1 54 98 -566 1690 135 3 30 chrX 2826821 2827176 -174146964 + MER4A LTR ERV1 261 664 0 1282 221 46 14 chrX 2827176 2827547 -174146593 - L1MC3 LINE L1 -377 7408 7026 294 375 71 6 chrX 2827858 2828026 -174146114 + MIR SINE MIR 47 225 -37 1349 196 0 41 chrX 2828088 2828358 -174145782 + AluJo SINE Alu 30 288 -24 702 154 0 0 chrX 2828365 2828469 -174145671 + FRAM SINE Alu 37 140 -36 21 0 0 0 chrX 2829441 2829462 -174144678 + AT_rich Low_complexity Low_complexity 1 21 0 2235 70 0 7 chrX 2829955 2830266 -174143874 - AluY SINE Alu 0 309 1 2420 203 30 16 chrX 2830266 2830786 -174143354 + MLT2B3 LTR ERVL 1 418 -35 364 186 32 8 chrX 2830819 2830943 -174143197 + GA-rich Low_complexity Low_complexity 2 128 0 563 175 24 0 chrX 2830978 2831197 -174142943 + GA-rich Low_complexity Low_complexity 1 224 0 273 119 0 0 chrX 2831382 2831424 -174142716 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 71 0 0 chrX 2832122 2832164 -174141976 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 2834254 2834284 -174139856 + AT_rich Low_complexity Low_complexity 1 30 0 1487 176 3 83 chrX 2834321 2834634 -174139506 + AluJb SINE Alu 1 288 -24 197 33 33 0 chrX 2834643 2834673 -174139467 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chrX 2834765 2834794 -174139346 + AT_rich Low_complexity Low_complexity 1 29 0 2352 57 3 0 chrX 2834948 2835276 -174138864 + AluY SINE Alu 1 329 0 423 0 0 0 chrX 2835522 2835569 -174138571 + (TG)n Simple_repeat Simple_repeat 2 48 0 2013 131 3 0 chrX 2836494 2836811 -174137329 - AluSx SINE Alu 0 318 1 2962 146 60 86 chrX 2837145 2837218 -174136922 - LTR8A LTR ERV1 0 727 654 2055 136 0 23 chrX 2837218 2837527 -174136613 + AluSx SINE Alu 1 302 -10 2962 146 60 86 chrX 2837527 2838199 -174135941 - LTR8A LTR ERV1 -73 654 1 1650 202 70 30 chrX 2838233 2838417 -174135723 + MER50 LTR ERV1 287 462 -272 2418 114 28 17 chrX 2838417 2838777 -174135363 - THE1B LTR MaLR 0 364 1 1650 202 70 30 chrX 2838777 2839023 -174135117 + MER50 LTR ERV1 462 734 0 308 261 0 0 chrX 2840989 2841054 -174133086 - MER2 DNA MER2_type -1 344 280 672 124 80 7 chrX 2841073 2841210 -174132930 + L1M LINE L1 5265 5411 -889 1508 135 7 52 chrX 2841608 2841896 -174132244 + Tigger4(Zombi) DNA MER2_type 2 276 -2455 2217 120 0 0 chrX 2841896 2842196 -174131944 + AluSx SINE Alu 1 300 -12 1040 122 109 0 chrX 2842198 2842354 -174131786 + AluSg/x SINE Alu 140 312 0 1753 139 13 3 chrX 2842365 2842666 -174131474 + Tigger4(Zombi) DNA MER2_type 269 572 -2159 2679 158 13 22 chrX 2842672 2842924 -174131216 + Tigger4(Zombi) DNA MER2_type 2144 2397 -334 1875 164 27 6 chrX 2842924 2843254 -174130886 - MER1B DNA MER1_type 0 337 1 2679 158 13 22 chrX 2843254 2843539 -174130601 + Tigger4(Zombi) DNA MER2_type 2397 2676 -55 23 0 0 0 chrX 2843677 2843700 -174130440 + AT_rich Low_complexity Low_complexity 1 23 0 574 254 86 10 chrX 2844802 2844999 -174129141 - MER20 DNA MER1_type -4 215 4 691 142 15 8 chrX 2845221 2845355 -174128785 + CT-rich Low_complexity Low_complexity 1 135 0 1714 167 31 7 chrX 2845355 2845642 -174128498 - AluJo SINE Alu -18 294 1 2114 113 49 0 chrX 2845786 2846070 -174128070 - AluSx SINE Alu -14 298 1 2009 146 31 29 chrX 2846214 2846599 -174127541 + MLT1B LTR MaLR 1 386 -4 830 239 0 0 chrX 2847557 2847720 -174126420 + FRAM SINE Alu 1 160 -16 1349 186 48 35 chrX 2848159 2848333 -174125807 - MER77 LTR ERV1 -17 588 407 2257 94 0 17 chrX 2848333 2848632 -174125508 - AluY SINE Alu -17 294 1 1349 186 48 35 chrX 2848632 2848768 -174125372 - MER77 LTR ERV1 -198 407 274 545 228 35 17 chrX 2848908 2849072 -174125068 - MLT1A1 LTR MaLR 0 365 216 1435 176 87 13 chrX 2899216 2899528 -174074612 + MER44D DNA MER2_type 5 609 0 1420 187 60 18 chrX 2899750 2900033 -174074107 + AluJb SINE Alu 1 295 -17 186 43 0 0 chrX 2900043 2900066 -174074074 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2048 171 16 5 chrX 2900884 2901270 -174072870 - MLT1B LTR MaLR 0 390 1 321 283 232 0 chrX 2901527 2901665 -174072475 - MER5A DNA MER1_type -7 182 13 1333 163 57 28 chrX 2901922 2902205 -174071935 + AluJo SINE Alu 1 291 -21 22 0 0 0 chrX 2902368 2902390 -174071750 + AT_rich Low_complexity Low_complexity 1 22 0 1921 167 3 15 chrX 2902624 2902959 -174071181 + MER47A DNA MER2_type 36 366 0 1792 212 51 36 chrX 2903120 2903416 -174070724 + L1MD1 LINE L1 5764 6071 -171 1958 140 140 8 chrX 2903416 2903794 -174070346 + MSTA LTR MaLR 1 428 0 1792 212 51 36 chrX 2903794 2903969 -174070171 + L1MD1 LINE L1 6071 6242 0 1005 137 0 0 chrX 2907258 2907411 -174066729 + AluSg/x SINE Alu 132 284 -28 28 48 0 0 chrX 2907417 2907459 -174066681 + AT_rich Low_complexity Low_complexity 1 42 0 1048 228 94 22 chrX 2907675 2907995 -174066145 + MER2 DNA MER2_type 1 343 -1 1672 147 26 23 chrX 2908567 2908873 -174065267 - MLT1B LTR MaLR -83 307 1 378 0 0 0 chrX 2908938 2908980 -174065160 + (CA)n Simple_repeat Simple_repeat 2 43 0 1799 82 4 0 chrX 2909036 2909267 -174064873 - AluSp SINE Alu -17 296 65 1356 203 41 24 chrX 2910103 2910394 -174063746 - AluJo SINE Alu -5 297 2 22 35 0 0 chrX 2910664 2910693 -174063447 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 2910800 2910821 -174063319 + AT_rich Low_complexity Low_complexity 1 21 0 218 96 0 58 chrX 2910889 2910941 -174063199 + (TTATA)n Simple_repeat Simple_repeat 2 50 0 572 292 17 43 chrX 2911270 2911503 -174062637 - MLT1E2 LTR MaLR -8 618 392 1255 129 224 11 chrX 2911523 2911786 -174062354 - MER47A DNA MER2_type -28 338 20 467 281 45 41 chrX 2911786 2912053 -174062087 - MLT1E2 LTR MaLR -239 387 120 2374 263 146 37 chrX 2912091 2913349 -174060791 + L1MD1 LINE L1 210 1605 -4935 1926 210 24 118 chrX 2913450 2913816 -174060324 + L1PA16 LINE L1 5499 5767 -399 414 100 0 0 chrX 2913816 2913876 -174060264 + (TA)n Simple_repeat Simple_repeat 1 60 0 1926 210 24 118 chrX 2913876 2914219 -174059921 + L1PA16 LINE L1 5767 6141 -25 1869 219 48 41 chrX 2914228 2914689 -174059451 + L1MD1 LINE L1 5374 5830 -806 1630 193 13 10 chrX 2914689 2914989 -174059151 + AluJo SINE Alu 2 302 -10 1869 219 48 41 chrX 2914989 2915384 -174058756 + L1MD1 LINE L1 5830 6220 -416 485 171 77 0 chrX 2915384 2915501 -174058639 + L1MD1 LINE L1 6500 6625 -11 1936 164 3 0 chrX 2915682 2915987 -174058153 - AluJb SINE Alu -6 306 1 229 289 70 26 chrX 2916255 2916369 -174057771 - MIR SINE MIR -32 230 112 731 130 41 0 chrX 2917700 2917869 -174056271 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 1961 178 113 10 chrX 2917908 2918325 -174055815 - MLT2B1 LTR ERVL -60 460 1 284 317 37 38 chrX 2918650 2918798 -174055342 - MIR SINE MIR -74 134 12 2173 106 3 10 chrX 2919560 2919853 -174054287 - AluSp SINE Alu -22 291 1 1053 255 92 10 chrX 2919878 2920270 -174053870 - L1MC3 LINE L1 0 7785 7362 32 43 0 0 chrX 2920832 2920878 -174053262 + AT_rich Low_complexity Low_complexity 1 46 0 2209 96 24 0 chrX 2921524 2921650 -174052490 + AluSx SINE Alu 1 123 -189 189 0 0 0 chrX 2921650 2921671 -174052469 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2209 96 24 0 chrX 2921671 2921837 -174052303 + AluSx SINE Alu 123 300 -12 22 0 0 0 chrX 2922130 2922152 -174051988 + AT_rich Low_complexity Low_complexity 1 22 0 312 232 159 0 chrX 2922284 2922422 -174051718 - Charlie2a DNA MER1_type -1784 1078 919 21 57 0 0 chrX 2922547 2922582 -174051558 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 2922991 2923017 -174051123 + (TCTA)n Simple_repeat Simple_repeat 4 29 0 22 0 0 0 chrX 2923078 2923100 -174051040 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chrX 2923264 2923315 -174050825 + AT_rich Low_complexity Low_complexity 1 51 0 26951 39 39 1 chrX 2923575 2927130 -174047010 + L1P LINE L1 3 3694 -2452 301 246 0 0 chrX 2927342 2927411 -174046729 + L1MA1 LINE L1 6225 6293 -9 1379 243 78 10 chrX 2927488 2927887 -174046253 - L1MC3 LINE L1 -611 7174 6749 472 163 38 22 chrX 2928150 2928464 -174045676 + (TCTA)n Simple_repeat Simple_repeat 1 319 0 333 323 84 21 chrX 2928738 2929023 -174045117 - L1M4 LINE L1 -2461 3685 3383 23 0 0 0 chrX 2929052 2929075 -174045065 + AT_rich Low_complexity Low_complexity 1 23 0 197 132 26 0 chrX 2929142 2929180 -174044960 + CT-rich Low_complexity Low_complexity 2 40 0 303 28 0 0 chrX 2929966 2930002 -174044138 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 366 23 0 0 chrX 2930001 2930044 -174044096 + (TC)n Simple_repeat Simple_repeat 1 43 0 304 197 7 148 chrX 2930212 2930354 -174043786 + Tigger3(Golem) DNA MER2_type 1 122 -2907 * 1677 126 90 44 chrX 2930340 2930465 -174043675 + Tigger3(Golem) DNA MER2_type 2284 2402 -626 1707 195 3 3 chrX 2930465 2930792 -174043348 + AluJo SINE Alu 1 312 0 1677 126 90 44 chrX 2930792 2931055 -174043085 + Tigger3(Golem) DNA MER2_type 2402 2690 -338 360 188 0 0 chrX 2931279 2931359 -174042781 + L1MEc LINE L1 2177 2256 -4140 497 308 44 56 chrX 2931394 2931732 -174042408 + L1MEc LINE L1 2255 2588 -3627 640 212 9 0 chrX 2931746 2931975 -174042165 + GA-rich Low_complexity Low_complexity 1 231 0 587 219 20 9 chrX 2932007 2932359 -174041781 + GA-rich Low_complexity Low_complexity 1 356 0 2362 166 2 5 chrX 2933302 2933713 -174040427 + MER66B LTR ERV1 1 410 -76 431 298 31 31 chrX 2934295 2934456 -174039684 - MER5A DNA MER1_type -27 162 2 1873 147 3 13 chrX 2934570 2934883 -174039257 + AluSx SINE Alu 1 310 -2 3018 190 11 54 chrX 2935005 2935225 -174038915 + LTR51 LTR ERV1 1 229 -442 2125 116 0 3 chrX 2935225 2935543 -174038597 - AluSx SINE Alu 0 317 1 3018 190 11 54 chrX 2935543 2936021 -174038119 + LTR51 LTR ERV1 229 670 -1 2505 59 0 3 chrX 2936222 2936525 -174037615 + AluY SINE Alu 3 304 -7 2401 195 27 63 chrX 2936607 2937242 -174036898 - LTR9 LTR ERV1 0 612 1 1923 229 24 15 chrX 2937417 2937880 -174036260 + LTR24 LTR ERV1 1 467 0 1884 149 3 29 chrX 2937899 2938208 -174035932 - AluJo SINE Alu -11 301 1 2054 125 76 15 chrX 2938501 2938844 -174035296 + THE1B LTR MaLR 1 364 0 230 136 45 45 chrX 2939322 2939388 -174034752 + L1MA9 LINE L1 6239 6304 -8 1619 110 195 23 chrX 2940506 2940814 -174033326 - MER4A LTR ERV1 -43 621 261 485 155 21 10 chrX 2940814 2940911 -174033229 - MER4A LTR ERV1 -566 98 1 288 0 0 0 chrX 2941593 2941625 -174032515 + (TATG)n Simple_repeat Simple_repeat 1 32 0 873 105 35 0 chrX 2941625 2941796 -174032344 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 189 74 0 0 chrX 2941828 2941855 -174032285 + (TC)n Simple_repeat Simple_repeat 2 28 0 427 133 0 42 chrX 2941860 2941980 -174032160 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 413 293 33 13 chrX 2943343 2943493 -174030647 + MIR SINE MIR 107 259 -3 190 107 47 67 chrX 2943532 2943681 -174030459 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 33 25 0 0 chrX 2944252 2944292 -174029848 + AT_rich Low_complexity Low_complexity 1 40 0 213 121 0 0 chrX 2944957 2944990 -174029150 + (T)n Simple_repeat Simple_repeat 1 33 0 465 19 0 0 chrX 2945710 2945764 -174028376 + (TG)n Simple_repeat Simple_repeat 1 54 0 1637 161 3 39 chrX 2945815 2946021 -174028119 - AluJo SINE Alu -18 294 101 2429 107 27 3 chrX 2946021 2946387 -174027753 + THE1C LTR MaLR 1 375 0 1637 161 3 39 chrX 2946387 2946485 -174027655 - AluJo SINE Alu -211 101 1 1067 70 23 12 chrX 2946988 2947159 -174026981 + (TCTA)n Simple_repeat Simple_repeat 2 174 0 720 89 16 8 chrX 2947273 2947397 -174026743 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 1883 180 12 21 chrX 2947881 2948011 -174026129 + MLT2B2 LTR ERVL 1 131 -384 2373 118 14 11 chrX 2948011 2948374 -174025766 + THE1B LTR MaLR 1 364 0 1883 180 12 21 chrX 2948374 2948675 -174025465 + MLT2B2 LTR ERVL 131 476 -39 427 221 16 0 chrX 2948707 2948834 -174025306 + (TCCA)n Simple_repeat Simple_repeat 1 129 0 2069 153 32 8 chrX 2949521 2949894 -174024246 + MLT1B LTR MaLR 1 382 -8 24 0 0 0 chrX 2950915 2950939 -174023201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 2951751 2951779 -174022361 + AT_rich Low_complexity Low_complexity 1 28 0 1538 160 9 0 chrX 2951781 2952012 -174022128 - AluJo SINE Alu -75 237 5 986 182 0 23 chrX 2952526 2952702 -174021438 - AluJ SINE Alu 0 312 141 710 184 102 20 chrX 2952739 2952762 -174021378 - AluJ SINE Alu -153 159 139 189 0 0 0 chrX 2952762 2952783 -174021357 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 710 184 102 20 chrX 2952783 2952906 -174021234 - AluJ SINE Alu -173 139 1 5426 45 1 0 chrX 2953319 2953980 -174020160 + L1PA5 LINE L1 5486 6147 -7 2626 116 3 0 chrX 2955367 2955729 -174018411 + THE1B LTR MaLR 1 363 -1 1422 178 21 0 chrX 2955766 2956047 -174018093 + L1PB4 LINE L1 5868 6154 -2 25 65 0 0 chrX 2956054 2956100 -174018040 + AT_rich Low_complexity Low_complexity 1 46 0 2029 123 0 7 chrX 2956263 2956563 -174017577 + AluJb SINE Alu 1 298 -14 832 159 39 0 chrX 2956691 2956963 -174017177 - L1MA5A LINE L1 -5 6292 5961 2259 113 0 0 chrX 2956963 2957273 -174016867 - AluSq SINE Alu -3 310 1 832 159 39 0 chrX 2957273 2957323 -174016817 - L1MA5A LINE L1 -336 5961 5914 855 171 0 0 chrX 2957351 2957497 -174016643 - L1PA16 LINE L1 -2 6164 6019 233 308 33 11 chrX 2957883 2957974 -174016166 + MIR SINE MIR 35 127 -135 1905 129 42 58 chrX 2958327 2958708 -174015432 - THE1C LTR MaLR 0 375 1 781 219 26 53 chrX 2958875 2959477 -174014663 + MER4C LTR ERV1 1 693 -6 208 299 103 10 chrX 2960898 2960995 -174013145 - MER5A DNA MER1_type -77 112 7 433 304 131 6 chrX 2961009 2961177 -174012963 - MER5A DNA MER1_type 0 189 1 199 316 127 0 chrX 2961193 2961272 -174012868 - MER5B DNA MER1_type 0 178 90 2267 186 20 40 chrX 2961275 2961830 -174012310 - L1PA16 LINE L1 -2 6164 5621 3672 205 27 64 chrX 2961945 2962989 -174011151 - L1PA16 LINE L1 -784 5362 4358 195 333 0 0 chrX 2963005 2963068 -174011072 + MER5B DNA MER1_type 115 177 -1 493 219 5 10 chrX 2963641 2963843 -174010297 + CT-rich Low_complexity Low_complexity 1 200 0 824 185 0 6 chrX 2963856 2964029 -174010111 + CT-rich Low_complexity Low_complexity 3 174 0 221 284 86 12 chrX 2964033 2964114 -174010026 + MIR SINE MIR 108 194 -68 543 185 21 35 chrX 2965479 2965806 -174008334 + CT-rich Low_complexity Low_complexity 1 322 0 251 219 21 31 chrX 2965948 2966044 -174008096 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 286 141 13 26 chrX 2966300 2966343 -174007797 + (TAGA)n Simple_repeat Simple_repeat 1 44 -33 2217 72 27 14 chrX 2966343 2966635 -174007505 + AluSx SINE Alu 11 306 -6 286 141 13 26 chrX 2966635 2966669 -174007471 + (TAGA)n Simple_repeat Simple_repeat 44 77 0 8727 27 2 1 chrX 2967173 2968989 -174005151 - L1PA2 LINE L1 -5 6150 4335 26 0 0 0 chrX 2969494 2969520 -174004620 + AT_rich Low_complexity Low_complexity 1 26 0 1479 186 10 10 chrX 2969906 2970202 -174003938 + AluJb SINE Alu 7 302 -10 2399 164 54 5 chrX 2970745 2971172 -174002968 + MER83 LTR ERV1 1 448 0 1541 206 24 22 chrX 2971389 2971758 -174002382 + L1PA16 LINE L1 5657 6026 -140 639 160 25 15 chrX 2971881 2972047 -174002093 + CT-rich Low_complexity Low_complexity 1 196 -32 201 39 0 0 chrX 2972047 2972073 -174002067 + (TTG)n Simple_repeat Simple_repeat 2 27 0 639 160 25 15 chrX 2972073 2972107 -174002033 + CT-rich Low_complexity Low_complexity 196 228 0 349 123 0 18 chrX 2973416 2973469 -174000671 - AluJo SINE Alu -12 290 239 1459 219 156 72 chrX 2973469 2973669 -174000471 + LTR1 LTR ERV1 1 183 -602 246 62 0 0 chrX 2973669 2973701 -174000439 + (CA)n Simple_repeat Simple_repeat 1 32 0 1459 219 156 72 chrX 2973701 2974223 -173999917 + LTR1 LTR ERV1 183 784 -1 1388 163 0 48 chrX 2974223 2974474 -173999666 - AluJo SINE Alu -70 242 4 531 227 25 81 chrX 2974619 2974818 -173999322 + MER106B DNA MER1_type 1 210 -849 1504 184 12 70 chrX 2974818 2975149 -173998991 + AluJb SINE Alu 1 312 0 531 227 25 81 chrX 2975149 2975178 -173998962 + MER106B DNA MER1_type 210 1043 -16 195 204 0 0 chrX 2975500 2975549 -173998591 + (TA)n Simple_repeat Simple_repeat 1 49 0 2750 164 15 33 chrX 2975684 2976225 -173997915 + LTR26B LTR ERV1 1 531 0 257 320 20 0 chrX 2977202 2977302 -173996838 + MLT1J LTR MaLR 80 181 -330 1828 208 65 114 chrX 2977722 2978095 -173996045 + LTR8A LTR ERV1 1 320 -407 2431 118 5 18 chrX 2978095 2978475 -173995665 + THE1C LTR MaLR 1 375 0 1828 208 65 114 chrX 2978475 2978864 -173995276 + LTR8A LTR ERV1 320 726 -1 324 270 10 0 chrX 2979003 2979103 -173995037 + MLT1I LTR MaLR 309 409 0 432 277 32 26 chrX 2979252 2979407 -173994733 - LTR16A1 LTR ERVL -4 453 298 315 0 0 0 chrX 2980728 2980763 -173993377 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 2980993 2981024 -173993116 + AT_rich Low_complexity Low_complexity 1 31 0 286 247 37 0 chrX 2981581 2981662 -173992478 + (TA)n Simple_repeat Simple_repeat 2 85 0 31 44 0 0 chrX 2981674 2981719 -173992421 + AT_rich Low_complexity Low_complexity 1 45 0 281 161 0 0 chrX 2981722 2981778 -173992362 - L1PB4 LINE L1 -1 6155 6100 186 236 0 0 chrX 2981783 2981838 -173992302 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 34 55 0 0 chrX 2982007 2982062 -173992078 + AT_rich Low_complexity Low_complexity 1 55 0 494 237 119 0 chrX 2982066 2982184 -173991956 - FLAM_A SINE Alu -1 132 1 920 164 0 7 chrX 2982914 2983066 -173991074 + FRAM SINE Alu 2 152 -14 899 293 86 112 chrX 2983222 2983889 -173990251 + L2 LINE L2 1839 2522 -791 3150 146 10 2 chrX 2983889 2984381 -173989759 + LOR1a LTR ERV1 1 496 -1 899 293 86 112 chrX 2984381 2984530 -173989610 + L2 LINE L2 2522 2673 -640 1982 129 0 14 chrX 2984530 2984860 -173989280 - AluSx SINE Alu 0 326 1 899 293 86 112 chrX 2984860 2985576 -173988564 + L2 LINE L2 2673 3307 -6 2376 82 0 19 chrX 2986180 2986495 -173987645 + AluY SINE Alu 3 311 0 213 65 0 0 chrX 2986548 2986579 -173987561 + (A)n Simple_repeat Simple_repeat 1 31 0 353 284 34 28 chrX 2986581 2986757 -173987383 + L1MC/D LINE L1 5272 5448 -2360 257 291 25 23 chrX 2986993 2987155 -173986985 + L1MC/D LINE L1 5665 5825 -312 180 0 0 0 chrX 2987182 2987202 -173986938 + (TA)n Simple_repeat Simple_repeat 2 21 0 493 311 58 5 chrX 2987202 2987392 -173986748 - MIR SINE MIR -35 227 28 207 0 0 0 chrX 2987430 2987453 -173986687 + (CATATA)n Simple_repeat Simple_repeat 5 27 0 793 159 0 15 chrX 2987468 2987600 -173986540 + FLAM_C SINE Alu 2 131 -2 268 230 10 10 chrX 2987645 2987745 -173986395 + (TA)n Simple_repeat Simple_repeat 1 100 0 422 88 11 132 chrX 2987748 2987839 -173986301 + MADE1 DNA Mariner 1 80 0 2285 76 6 31 chrX 2988017 2988334 -173985806 + AluY SINE Alu 1 309 -2 26 0 0 0 chrX 2988334 2988360 -173985780 + AT_rich Low_complexity Low_complexity 1 26 0 244 286 128 23 chrX 2989392 2989525 -173984615 - MIR SINE MIR -42 220 74 1566 151 16 87 chrX 2990729 2991041 -173983099 - AluJo SINE Alu -21 291 2 1055 286 68 52 chrX 2991898 2992706 -173981434 - L1ME3A LINE L1 -94 6076 5255 279 299 99 10 chrX 2992766 2992836 -173981304 - L1ME3A LINE L1 -925 5221 5159 2125 135 30 28 chrX 2992836 2993199 -173980941 + THE1B LTR MaLR 1 364 0 279 299 99 10 chrX 2993199 2993329 -173980811 - L1ME3A LINE L1 -987 5159 5003 244 293 166 13 chrX 2993646 2993803 -173980337 - L1ME3A LINE L1 -2272 3874 3694 * 271 272 128 11 chrX 2993796 2993976 -173980164 - L1M4 LINE L1 -1538 4608 4408 353 270 0 0 chrX 2994319 2994393 -173979747 - MER5A DNA MER1_type -99 90 17 1658 197 0 7 chrX 2994876 2995171 -173978969 + AluJo SINE Alu 3 295 -17 1616 193 0 41 chrX 2995234 2995550 -173978590 - AluJb SINE Alu -8 304 2 883 154 83 12 chrX 2998199 2998368 -173975772 + MER20 DNA MER1_type 34 214 -5 21 36 0 0 chrX 2998876 2998904 -173975236 + AT_rich Low_complexity Low_complexity 1 28 0 2441 153 28 19 chrX 2998905 2999335 -173974805 + Tigger2a DNA MER2_type 1 434 0 1945 155 0 0 chrX 2999361 2999668 -173974472 + AluSx SINE Alu 1 307 0 1448 121 56 0 chrX 2999903 3000152 -173973988 - L1MA4 LINE L1 0 6300 6038 380 341 59 36 chrX 3000995 3001353 -173972787 + L1M4 LINE L1 2480 2845 -3301 1802 149 36 0 chrX 3001381 3001683 -173972457 + AluSq SINE Alu 1 313 0 383 123 0 27 chrX 3001689 3001762 -173972378 + (GAAA)n Simple_repeat Simple_repeat 4 74 0 250 171 24 49 chrX 3001882 3001964 -173972176 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 2650 182 34 61 chrX 3002124 3003111 -173971029 + L1MA10 LINE L1 4626 5607 -561 662 147 0 18 chrX 3003111 3003220 -173970920 + FLAM_C SINE Alu 14 120 -23 330 87 0 0 chrX 3003221 3003267 -173970873 + (TA)n Simple_repeat Simple_repeat 1 46 0 3314 178 36 23 chrX 3003271 3004002 -173970138 + L1MA10 LINE L1 5594 6333 -1 410 158 40 0 chrX 3004590 3004666 -173969474 + MADE1 DNA Mariner 2 80 0 24 0 0 0 chrX 3005104 3005128 -173969012 + AT_rich Low_complexity Low_complexity 1 24 0 1341 185 14 42 chrX 3005496 3005664 -173968476 + AluJb SINE Alu 1 159 -153 2048 139 232 34 chrX 3005664 3006104 -173968036 - MER1A DNA MER1_type 0 527 1 1341 185 14 42 chrX 3006104 3006222 -173967918 + AluJb SINE Alu 159 279 -33 213 65 0 0 chrX 3006222 3006253 -173967887 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 266 159 48 28 chrX 3006626 3006771 -173967369 + (TCTA)n Simple_repeat Simple_repeat 2 149 0 23 0 0 0 chrX 3006929 3006952 -173967188 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 3007574 3007606 -173966534 + AT_rich Low_complexity Low_complexity 1 32 0 37 52 0 0 chrX 3007627 3007685 -173966455 + AT_rich Low_complexity Low_complexity 1 58 0 2365 274 101 35 chrX 3008473 3010433 -173963707 + L1MEc LINE L1 638 2686 -3529 561 192 20 20 chrX 3010491 3010637 -173963503 - L1MA10 LINE L1 -7 6327 6182 207 114 0 0 chrX 3011076 3011111 -173963029 + (CA)n Simple_repeat Simple_repeat 2 36 0 1062 171 0 6 chrX 3012479 3012660 -173961480 - AluJb SINE Alu -16 296 117 1641 143 68 8 chrX 3012660 3012926 -173961214 - AluJo SINE Alu -30 282 1 2687 162 83 2 chrX 3013175 3013681 -173960459 + MER44D DNA MER2_type 2 603 -2 4104 100 14 88 chrX 3013704 3014421 -173959719 + MER4A LTR ERV1 1 664 0 377 361 132 24 chrX 3014428 3014852 -173959288 - L1MEc LINE L1 -5893 503 34 932 191 0 0 chrX 3015174 3015336 -173958804 - AluJb SINE Alu -4 308 147 182 105 26 0 chrX 3015598 3015636 -173958504 + T-rich Low_complexity Low_complexity 3 41 0 405 127 14 0 chrX 3015715 3015786 -173958354 - AluS SINE Alu -237 72 1 1890 161 6 19 chrX 3018048 3018364 -173955776 + AluJo SINE Alu 1 312 0 1867 170 120 0 chrX 3019298 3019680 -173954460 - MSTA LTR MaLR 0 428 1 9936 149 16 14 chrX 3019718 3020454 -173953686 - L1PA13 LINE L1 -281 5882 5148 2486 125 5 8 chrX 3020454 3020830 -173953310 + THE1C LTR MaLR 1 375 0 9936 149 16 14 chrX 3020830 3021704 -173952436 - L1PA13 LINE L1 -1015 5148 4269 978 93 0 7 chrX 3021704 3021844 -173952296 - MER85 DNA T2_type 0 139 1 9936 149 16 14 chrX 3021844 3022641 -173951499 - L1PA13 LINE L1 -1894 4269 3475 202 386 26 26 chrX 3022862 3023090 -173951050 - L2 LINE L2 -1357 1957 1730 198 0 0 0 chrX 3023190 3023212 -173950928 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1663 184 36 16 chrX 3024368 3024673 -173949467 + AluSx SINE Alu 2 312 0 2555 242 26 29 chrX 3025071 3025425 -173948715 - MER76 LTR ERV -29 659 306 1793 145 60 33 chrX 3025425 3025790 -173948350 - THE1C LTR MaLR 0 375 1 2555 242 26 29 chrX 3025790 3026096 -173948044 - MER76 LTR ERV -382 306 1 1434 204 3 22 chrX 3026133 3026446 -173947694 + AluJo SINE Alu 1 307 -5 4915 143 35 21 chrX 3027016 3028018 -173946122 + L1PA15 LINE L1 5148 6164 -1 298 201 15 67 chrX 3028422 3028556 -173945584 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 1804 132 3 10 chrX 3028556 3028851 -173945289 + L1PA16 LINE L1 5715 6007 -159 225 224 52 0 chrX 3028850 3028908 -173945232 + L1MD3 LINE L1 6615 6675 -1320 * 1628 143 4 0 chrX 3029766 3030004 -173944136 + AluSx SINE Alu 1 239 -73 189 0 0 0 chrX 3030014 3030035 -173944105 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 530 100 40 0 chrX 3032428 3032528 -173941612 + GA-rich Low_complexity Low_complexity 1 104 0 189 328 28 79 chrX 3032528 3032705 -173941435 - L3 LINE CR1 -25 1552 1385 22 0 0 0 chrX 3032769 3032791 -173941349 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chrX 3033017 3033067 -173941073 + AT_rich Low_complexity Low_complexity 1 50 0 186 351 70 54 chrX 3033256 3033515 -173940625 - L3 LINE CR1 -828 749 487 252 0 0 0 chrX 3033795 3033823 -173940317 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 3034741 3034762 -173939378 + AT_rich Low_complexity Low_complexity 1 21 0 296 316 129 19 chrX 3035746 3035955 -173938185 + L2 LINE L2 1238 1469 -1845 1431 244 37 55 chrX 3035955 3036463 -173937677 - MLT1D LTR MaLR 0 505 7 22 35 0 0 chrX 3037706 3037735 -173936405 + AT_rich Low_complexity Low_complexity 1 29 0 206 264 57 0 chrX 3038506 3038559 -173935581 + MIR SINE MIR 117 172 -90 1688 199 0 0 chrX 3039007 3039294 -173934846 + AluJo SINE Alu 2 288 -24 848 254 55 47 chrX 3039708 3039914 -173934226 - MLT1E LTR MaLR -2 591 381 2775 178 154 13 chrX 3039914 3040549 -173933591 - LTR8A LTR ERV1 -2 725 1 848 254 55 47 chrX 3040549 3040598 -173933542 - MLT1E LTR MaLR -212 381 334 379 329 22 0 chrX 3040659 3040796 -173933344 - MLT1E LTR MaLR -381 212 73 3030 262 103 55 chrX 3040812 3042567 -173931573 + L1MEc LINE L1 2179 4010 -2205 2284 108 0 6 chrX 3042567 3042881 -173931259 + AluSq SINE Alu 1 312 -1 3030 262 103 55 chrX 3042881 3043201 -173930939 + L1MEc LINE L1 4010 4313 -1902 2147 164 47 29 chrX 3043202 3043741 -173930399 + MLT2A2 LTR ERVL 1 554 0 1279 256 116 58 chrX 3043742 3044724 -173929416 + L1MEc LINE L1 4356 5394 -821 * 6053 126 11 14 chrX 3044716 3045647 -173928493 + THE1C-int LTR MaLR 653 1580 0 1823 169 38 22 chrX 3045647 3046013 -173928127 + THE1C LTR MaLR 1 372 -3 255 61 0 0 chrX 3046013 3046046 -173928094 + (CA)n Simple_repeat Simple_repeat 2 34 0 222 267 78 22 chrX 3046046 3046136 -173928004 - MIR SINE MIR -58 204 110 1495 90 4 37 chrX 3046160 3046404 -173927736 - L1MA8 LINE L1 -4 6287 6052 2449 111 3 14 chrX 3046464 3046832 -173927308 - THE1B LTR MaLR 0 364 1 780 184 0 25 chrX 3047663 3047949 -173926191 + GA-rich Low_complexity Low_complexity 1 278 0 629 204 6 17 chrX 3047960 3048141 -173925999 + GA-rich Low_complexity Low_complexity 2 180 0 534 126 32 11 chrX 3048928 3049023 -173925117 + MER4A LTR ERV1 2 98 -566 1628 131 14 78 chrX 3049023 3049390 -173924750 + MER4A LTR ERV1 261 662 -2 2455 62 0 0 chrX 3049663 3049980 -173924160 + AluY SINE Alu 1 317 0 2267 103 3 0 chrX 3051052 3051352 -173922788 - AluSx SINE Alu -11 301 1 3877 158 12 12 chrX 3053687 3054392 -173919748 - MER51C LTR ERV1 -17 623 1 200 225 0 0 chrX 3054703 3054743 -173919397 + MIR SINE MIR 2 41 -221 807 113 0 24 chrX 3054963 3055087 -173919053 + MER4A LTR ERV1 544 664 0 216 217 57 19 chrX 3055343 3055449 -173918691 + (TA)n Simple_repeat Simple_repeat 1 110 0 530 313 106 26 chrX 3055449 3055836 -173918304 - L1MC4a LINE L1 -1880 5928 5511 1703 176 3 23 chrX 3055931 3056233 -173917907 + AluJb SINE Alu 1 296 -16 284 165 39 0 chrX 3056269 3056322 -173917818 + (TA)n Simple_repeat Simple_repeat 1 50 -57 1924 130 55 22 chrX 3056322 3056683 -173917457 + THE1C LTR MaLR 1 373 -2 284 165 39 0 chrX 3056683 3056732 -173917408 + (TA)n Simple_repeat Simple_repeat 50 107 0 1089 211 32 7 chrX 3057060 3057345 -173916795 - MER33 DNA MER1_type -1 323 32 21 0 0 0 chrX 3057952 3057973 -173916167 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chrX 3058913 3058956 -173915184 + AT_rich Low_complexity Low_complexity 1 43 0 194 62 31 0 chrX 3059731 3059763 -173914377 + (TC)n Simple_repeat Simple_repeat 2 34 0 296 245 50 58 chrX 3060413 3060514 -173913626 - MIR SINE MIR -4 258 157 1617 147 125 9 chrX 3060514 3060841 -173913299 + MLT1A1 LTR MaLR 1 365 0 296 245 50 58 chrX 3060841 3060878 -173913262 - MIR SINE MIR -105 157 121 669 184 101 0 chrX 3061092 3061250 -173912890 - L1MA5A LINE L1 -1 6296 6123 904 189 5 16 chrX 3061351 3061541 -173912599 + AluJo SINE Alu 119 306 -6 899 226 76 13 chrX 3061589 3062018 -173912122 + MLT1D LTR MaLR 3 467 0 2282 112 0 6 chrX 3062176 3062490 -173911650 - AluSx SINE Alu 0 312 1 669 269 159 48 chrX 3062664 3062861 -173911279 - L1MD2 LINE L1 -12 6347 6173 201 39 0 0 chrX 3062861 3062887 -173911253 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chrX 3062888 3062908 -173911232 + (GA)n Simple_repeat Simple_repeat 2 21 0 669 269 159 48 chrX 3062908 3063080 -173911060 - L1MD2 LINE L1 -185 6174 5935 * 887 109 7 7 chrX 3063072 3063219 -173910921 + L1MA5A LINE L1 5828 5974 -323 1494 194 14 7 chrX 3063448 3063727 -173910413 + AluJo SINE Alu 1 281 -31 2801 16 0 0 chrX 3064134 3064445 -173909695 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chrX 3064445 3064468 -173909672 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chrX 3064564 3064591 -173909549 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 307 206 31 chrX 3064753 3065199 -173908941 + L2 LINE L2 2446 2969 -345 201 171 24 0 chrX 3065850 3065891 -173908249 + C-rich Low_complexity Low_complexity 2 43 0 359 323 48 42 chrX 3065919 3066108 -173908032 + L2 LINE L2 3123 3312 -1 2006 205 93 58 chrX 3066153 3066890 -173907250 - LTR1B LTR ERV1 0 785 29 2211 158 8 74 chrX 3067001 3067500 -173906640 - LOR1a LTR ERV1 0 497 32 1454 103 0 0 chrX 3068138 3068323 -173905817 + AluSx SINE Alu 1 185 -127 1456 170 7 0 chrX 3068323 3068600 -173905540 + L1MA4 LINE L1 5320 5598 -702 1189 150 0 12 chrX 3068604 3068777 -173905363 + FRAM SINE Alu 1 164 -12 2210 144 17 10 chrX 3068777 3069179 -173904961 + L1MA4 LINE L1 5606 6010 -290 1001 129 13 7 chrX 3069283 3069438 -173904702 - AluJo SINE Alu -76 236 81 2670 125 7 7 chrX 3069438 3069847 -173904293 + LTR9B LTR ERV1 236 644 0 2240 154 64 15 chrX 3070102 3070568 -173903572 + L1MB3 LINE L1 5659 6147 -36 2099 150 49 29 chrX 3070569 3071095 -173903045 - MLT2A2 LTR ERVL 0 554 1 4199 143 33 1 chrX 3071514 3072215 -173901925 - LTR39 LTR ERV1 -60 723 1 250 294 110 46 chrX 3072932 3073041 -173901099 - MER5A DNA MER1_type -53 136 21 821 181 6 0 chrX 3073254 3073431 -173900709 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 297 130 0 0 chrX 3073431 3073477 -173900663 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 1016 128 6 0 chrX 3073477 3073557 -173900583 + (TCCA)n Simple_repeat Simple_repeat 1 260 0 1016 128 6 0 chrX 3073557 3073736 -173900404 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 231 0 0 chrX 3073834 3073886 -173900254 + (TCCA)n Simple_repeat Simple_repeat 3 54 0 538 141 207 71 chrX 3074588 3074837 -173899303 - MER4C LTR ERV1 -20 445 169 1042 124 54 158 chrX 3074842 3075228 -173898912 - MER4A LTR ERV1 -318 346 1 2660 172 103 48 chrX 3076279 3076966 -173897174 - LTR8A LTR ERV1 0 727 3 345 364 0 0 chrX 3076997 3077126 -173897014 - MIR SINE MIR -6 256 128 540 317 6 0 chrX 3077153 3077317 -173896823 + MLT2F LTR ERVL 432 596 -67 21 36 0 0 chrX 3077562 3077590 -173896550 + AT_rich Low_complexity Low_complexity 1 28 0 3931 123 8 9 chrX 3077722 3077903 -173896237 - MER41B LTR ERV1 0 635 455 1756 157 29 32 chrX 3077903 3078247 -173895893 + MER61A LTR ERV1 1 343 0 3931 123 8 9 chrX 3078247 3078701 -173895439 - MER41B LTR ERV1 -180 455 1 2016 122 0 33 chrX 3079326 3079629 -173894511 + AluSx SINE Alu 14 306 -6 2455 68 0 13 chrX 3081102 3081413 -173892727 + AluY SINE Alu 1 307 -4 186 103 0 0 chrX 3081468 3081497 -173892643 + (TG)n Simple_repeat Simple_repeat 2 30 0 1999 187 6 3 chrX 3081504 3081868 -173892272 + MLT1A1 LTR MaLR 1 365 0 233 300 157 33 chrX 3082110 3082320 -173891820 - L2 LINE L2 -597 2717 2482 317 205 0 13 chrX 3082389 3082467 -173891673 - LTR52 LTR ERVL -340 81 5 2439 231 20 38 chrX 3082859 3083169 -173890971 + MER82 DNA MER2_type 1 315 -338 2380 165 68 4 chrX 3083169 3083636 -173890504 + LOR1a LTR ERV1 1 497 0 2439 231 20 38 chrX 3083636 3083988 -173890152 + MER82 DNA MER2_type 315 651 -2 3968 156 13 11 chrX 3084945 3085655 -173888485 - MER50 LTR ERV1 -23 711 1 2676 175 42 43 chrX 3085947 3086297 -173887843 + MER4D LTR ERV1 1 351 -552 258 32 0 0 chrX 3086297 3086328 -173887812 + (TG)n Simple_repeat Simple_repeat 1 31 0 2676 175 42 43 chrX 3086328 3086643 -173887497 + MER4D LTR ERV1 351 665 -238 1902 70 4 15 chrX 3086643 3086916 -173887224 + MER41A LTR ERV1 1 270 -284 254 190 35 0 chrX 3086916 3086974 -173887166 + LTR1B LTR ERV1 767 826 0 * 3532 169 1 29 chrX 3086974 3087252 -173886888 + LTR39 LTR ERV1 152 436 -347 1817 144 0 27 chrX 3087252 3087595 -173886545 - AluSx SINE Alu 0 335 1 3532 169 1 29 chrX 3087595 3087965 -173886175 + LTR39 LTR ERV1 436 783 0 575 255 185 8 chrX 3089719 3089978 -173884162 - MLT1F LTR MaLR 0 542 238 35 126 0 0 chrX 3090041 3090335 -173883805 + AT_rich Low_complexity Low_complexity 1 294 0 219 242 19 32 chrX 3090510 3090667 -173883473 + (TTAAA)n Simple_repeat Simple_repeat 5 159 0 43 115 0 0 chrX 3090673 3090891 -173883249 + AT_rich Low_complexity Low_complexity 1 218 0 302 266 16 38 chrX 3090962 3091146 -173882994 + (TA)n Simple_repeat Simple_repeat 1 180 0 544 186 90 42 chrX 3091146 3091227 -173882913 - L1MB4 LINE L1 -28 6152 6076 2227 161 29 0 chrX 3091227 3091606 -173882534 + MLT1B LTR MaLR 1 390 0 544 186 90 42 chrX 3091606 3091691 -173882449 - L1MB4 LINE L1 -104 6076 5978 1909 104 156 9 chrX 3091921 3092247 -173881893 - THE1C LTR MaLR -1 374 1 376 182 0 107 chrX 3092567 3092622 -173881518 - L1MB4 LINE L1 -202 5978 5941 1738 175 3 17 chrX 3092622 3092913 -173881227 - AluJo SINE Alu -25 287 1 376 182 0 107 chrX 3092913 3092978 -173881162 - L1MB4 LINE L1 -239 5941 5871 424 331 0 18 chrX 3092983 3093149 -173880991 - MLT1F LTR MaLR -378 164 2 198 150 0 0 chrX 3093188 3093228 -173880912 + (CCTA)n Simple_repeat Simple_repeat 3 42 0 2059 122 64 103 chrX 3093315 3093781 -173880359 - LTR47A LTR ERVL 0 452 5 288 312 185 0 chrX 3094469 3094658 -173879482 + L2 LINE L2 2259 2482 -832 545 129 11 0 chrX 3094853 3094946 -173879194 + G-rich Low_complexity Low_complexity 5 98 0 1568 193 3 20 chrX 3095113 3095419 -173878721 + AluJo SINE Alu 1 301 -11 46 45 0 0 chrX 3096490 3096557 -173877583 + AT_rich Low_complexity Low_complexity 1 67 0 1162 123 10 5 chrX 3096702 3096897 -173877243 + L1MA4A LINE L1 6102 6297 -6 497 238 31 21 chrX 3097166 3097359 -173876781 - L1MD3 LINE L1 0 7995 7801 186 350 15 58 chrX 3097467 3097604 -173876536 - MIR SINE MIR -131 131 1 1101 63 0 0 chrX 3098599 3098781 -173875359 + L1PA10 LINE L1 6006 6187 0 342 77 39 0 chrX 3098860 3098912 -173875228 + MLT2A2 LTR ERVL 400 453 0 21 0 0 0 chrX 3099391 3099412 -173874728 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 3099527 3099568 -173874572 + (TA)n Simple_repeat Simple_repeat 1 41 0 1679 174 7 26 chrX 3100256 3100566 -173873574 + AluJo SINE Alu 2 305 -7 234 0 0 0 chrX 3100789 3100815 -173873325 + (TTG)n Simple_repeat Simple_repeat 2 27 0 208 231 0 0 chrX 3101787 3101826 -173872314 + polypurine Low_complexity Low_complexity 2 40 0 483 194 14 14 chrX 3101831 3101970 -173872170 + GA-rich Low_complexity Low_complexity 3 141 0 553 141 0 63 chrX 3101983 3102174 -173871966 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 211 253 30 0 chrX 3102196 3102295 -173871845 + GA-rich Low_complexity Low_complexity 4 105 0 * 314 115 16 0 chrX 3102285 3102346 -173871794 + (GGAGA)n Simple_repeat Simple_repeat 4 65 0 441 0 0 0 chrX 3102662 3102711 -173871429 + (TTTTA)n Simple_repeat Simple_repeat 4 52 0 328 309 0 0 chrX 3102747 3102841 -173871299 - MIR SINE MIR -8 254 161 208 191 61 41 chrX 3102841 3102988 -173871152 + (TTATG)n Simple_repeat Simple_repeat 5 154 0 1572 195 76 24 chrX 3103011 3103380 -173870760 + MLT1B LTR MaLR 3 390 0 343 333 5 22 chrX 3103425 3103550 -173870590 - MIR SINE MIR -66 142 21 2060 132 19 29 chrX 3103995 3104374 -173869766 + THE1C LTR MaLR 1 375 0 2922 187 10 84 chrX 3104795 3105187 -173868953 - L1MA7 LINE L1 -9 6282 5979 1954 160 0 3 chrX 3105187 3105499 -173868641 - AluJo SINE Alu -1 311 1 2922 187 10 84 chrX 3105499 3105912 -173868228 - L1MA7 LINE L1 -312 5979 5537 213 108 0 0 chrX 3105915 3105952 -173868188 + (CCA)n Simple_repeat Simple_repeat 1 37 0 758 164 0 0 chrX 3106768 3106890 -173867250 + AluJb SINE Alu 4 125 -187 717 163 12 6 chrX 3107523 3107683 -173866457 + GA-rich Low_complexity Low_complexity 4 164 0 226 277 15 0 chrX 3107710 3107775 -173866365 + (TA)n Simple_repeat Simple_repeat 1 66 0 454 111 14 0 chrX 3107907 3107979 -173866161 - MADE1 DNA Mariner -5 75 3 232 120 40 0 chrX 3108011 3108061 -173866079 + (TA)n Simple_repeat Simple_repeat 2 53 0 577 208 100 0 chrX 3109168 3109288 -173864852 - FLAM_A SINE Alu 0 133 2 2050 123 0 4 chrX 3110126 3110410 -173863730 + AluSx SINE Alu 1 283 -29 262 0 0 0 chrX 3110410 3110439 -173863701 + (CAAAA)n Simple_repeat Simple_repeat 2 125 0 3852 104 15 74 chrX 3110439 3111008 -173863132 + L1PA13 LINE L1 5524 6048 -115 2570 40 0 0 chrX 3111008 3111304 -173862836 + AluY SINE Alu 1 296 -15 3852 104 15 74 chrX 3111304 3111409 -173862731 + L1PA13 LINE L1 6048 6158 -5 268 253 82 55 chrX 3111665 3111811 -173862329 + MLT1J LTR MaLR 102 251 -260 313 253 11 22 chrX 3113093 3113184 -173860956 - L1MC4 LINE L1 -1339 6703 6614 415 191 0 35 chrX 3113246 3113361 -173860779 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 180 176 0 0 chrX 3113389 3113423 -173860717 + (TATATG)n Simple_repeat Simple_repeat 2 35 0 273 265 102 48 chrX 3114005 3114171 -173859969 + HAL1 LINE L1 5 179 -2328 408 205 33 33 chrX 3114412 3114534 -173859606 - L1MA4A LINE L1 -181 6122 6001 360 321 131 30 chrX 3114790 3115027 -173859113 + HAL1 LINE L1 637 897 -1610 693 285 56 3 chrX 3115075 3115359 -173858781 + Charlie1b DNA MER1_type 56 354 -169 2689 80 17 8 chrX 3115568 3115929 -173858211 - THE1B LTR MaLR 0 364 1 232 253 127 0 chrX 3116062 3116141 -173857999 + L1ME4a LINE L1 5937 6025 -96 752 160 35 7 chrX 3116824 3116968 -173857172 - Tigger3b DNA MER2_type -808 423 276 507 223 0 29 chrX 3116970 3117073 -173857067 - Tigger3b DNA MER2_type -1131 100 1 324 194 19 29 chrX 3117293 3117396 -173856744 + (TA)n Simple_repeat Simple_repeat 1 102 0 249 231 0 23 chrX 3117407 3117537 -173856603 + (TA)n Simple_repeat Simple_repeat 2 128 0 751 166 24 11 chrX 3117538 3117798 -173856342 + (TCTA)n Simple_repeat Simple_repeat 1 263 0 491 321 121 25 chrX 3118883 3119247 -173854893 + LTR16A1 LTR ERVL 49 447 -10 1782 168 0 32 chrX 3120824 3121133 -173853007 - AluJb SINE Alu -13 299 1 871 146 0 7 chrX 3121499 3121643 -173852497 + FLAM_C SINE Alu 1 143 0 40 67 0 0 chrX 3122120 3122195 -173851945 + AT_rich Low_complexity Low_complexity 1 75 0 1741 166 0 3 chrX 3123521 3123864 -173850276 - AluSx SINE Alu 0 342 1 956 120 0 0 chrX 3123864 3123997 -173850143 - AluSq/x SINE Alu -178 135 3 393 118 59 0 chrX 3124725 3124793 -173849347 + L1P5 LINE L1 5708 5779 -377 1452 186 14 25 chrX 3126444 3126729 -173847411 - AluJo SINE Alu -30 282 1 552 126 35 14 chrX 3127083 3127226 -173846914 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 247 234 24 6 chrX 3127236 3127403 -173846737 + (TA)n Simple_repeat Simple_repeat 2 171 0 243 294 138 56 chrX 3127495 3127726 -173846414 - MIR SINE MIR -2 260 11 21 0 0 0 chrX 3128011 3128032 -173846108 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chrX 3129085 3129114 -173845026 + (GA)n Simple_repeat Simple_repeat 1 29 0 781 292 70 107 chrX 3129505 3129888 -173844252 + L1ME1 LINE L1 62 413 -5983 2607 97 8 3 chrX 3129888 3130249 -173843891 - THE1B LTR MaLR -1 363 1 781 292 70 107 chrX 3130249 3130509 -173843631 + L1ME1 LINE L1 413 681 -5715 1998 103 33 0 chrX 3130536 3130809 -173843331 - AluSx SINE Alu -30 282 1 410 255 0 0 chrX 3130839 3130941 -173843199 + L1ME1 LINE L1 693 794 -5602 2001 253 69 35 chrX 3131017 3131531 -173842609 + L1ME1 LINE L1 4357 4852 -1383 369 0 0 0 chrX 3131531 3131572 -173842568 + (CA)n Simple_repeat Simple_repeat 2 42 0 2001 253 69 35 chrX 3131572 3132329 -173841811 + L1ME1 LINE L1 4852 5673 -562 * 5437 70 28 8 chrX 3132326 3133080 -173841060 - L1P LINE L1 -2023 4123 3355 * 6019 95 3 9 chrX 3133079 3133963 -173840177 - L1P LINE L1 -3016 3130 2252 9052 73 7 0 chrX 3133963 3135978 -173838162 + L1PA7 LINE L1 4115 6152 -2 1005 268 26 60 chrX 3135978 3136479 -173837661 + L1ME1 LINE L1 5664 6147 -88 395 229 46 78 chrX 3136410 3136563 -173837577 + L1MA10 LINE L1 6240 6387 -16 * 21 57 0 0 chrX 3136709 3136744 -173837396 + AT_rich Low_complexity Low_complexity 1 35 0 4419 126 18 18 chrX 3137963 3138685 -173835455 + L1PA16 LINE L1 5444 6165 -1 2514 99 0 50 chrX 3139454 3139837 -173834303 - THE1B LTR MaLR 0 364 1 1235 76 6 0 chrX 3140304 3140475 -173833665 - L1PA5 LINE L1 -1 6153 5982 216 0 0 0 chrX 3140787 3140811 -173833329 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 3141870 3141892 -173832248 + AT_rich Low_complexity Low_complexity 1 22 0 297 183 0 0 chrX 3142185 3142245 -173831895 + GA-rich Low_complexity Low_complexity 1 60 0 1962 153 0 7 chrX 3142291 3142599 -173831541 + AluJb SINE Alu 1 306 -6 1704 163 3 7 chrX 3143035 3143318 -173830822 - AluJo SINE Alu -19 293 12 894 218 35 0 chrX 3144258 3144460 -173829680 + MER3 DNA MER1_type 1 209 0 408 277 168 7 chrX 3144480 3144617 -173829523 + MER5A DNA MER1_type 30 188 -1 2274 107 0 3 chrX 3145589 3145915 -173828225 + AluSx SINE Alu 12 336 0 1169 217 19 139 chrX 3146226 3146516 -173827624 - MLT1C LTR MaLR -42 425 214 4656 112 6 17 chrX 3146516 3147215 -173826925 - LTR8 LTR ERV1 0 691 1 1169 217 19 139 chrX 3147215 3147407 -173826733 - MLT1C LTR MaLR -253 214 1 24 53 0 0 chrX 3149684 3149722 -173824418 + AT_rich Low_complexity Low_complexity 1 38 0 1999 178 72 2 chrX 3149785 3150185 -173823955 - MSTA LTR MaLR 0 428 1 1017 110 0 7 chrX 3150185 3150340 -173823800 - MSTA-int LTR MaLR 0 1651 1498 374 364 78 33 chrX 3150387 3150903 -173823237 - ERVL LTR ERVL -648 5116 4578 2567 217 19 15 chrX 3151330 3151856 -173822284 + MER74A LTR ERVL 31 558 0 1765 166 3 14 chrX 3151951 3152246 -173821894 + AluJb SINE Alu 1 292 -20 1882 133 0 11 chrX 3152497 3152775 -173821365 + AluSx SINE Alu 1 275 -37 2239 149 31 24 chrX 3153461 3153844 -173820296 + LTR26 LTR ERV1 218 603 0 285 140 0 0 chrX 3154242 3154299 -173819841 + (TC)n Simple_repeat Simple_repeat 2 58 0 285 29 0 0 chrX 3154299 3154333 -173819807 + (CA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 3154333 3154367 -173819773 + (GA)n Simple_repeat Simple_repeat 1 34 0 25 51 0 0 chrX 3155476 3155515 -173818625 + AT_rich Low_complexity Low_complexity 1 39 0 240 242 0 0 chrX 3156166 3156228 -173817912 - L1M4 LINE L1 -2393 3753 3692 1352 6 17 17 chrX 3156232 3156410 -173817730 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1848 155 10 3 chrX 3156425 3156716 -173817424 - AluJb SINE Alu -19 293 1 422 310 7 35 chrX 3156864 3157006 -173817134 - MIR SINE MIR -89 173 36 299 293 0 57 chrX 3157401 3157524 -173816616 + L2 LINE L2 1799 1914 -1400 1412 139 9 0 chrX 3157573 3157803 -173816337 - MLT1B LTR MaLR 0 390 159 2087 172 6 10 chrX 3157804 3158194 -173815946 - MLT1B LTR MaLR 0 396 4 4179 74 26 0 chrX 3158227 3158792 -173815348 + LTR19B LTR ERV1 1 580 0 183 328 52 43 chrX 3158823 3158939 -173815201 - L2 LINE L2 -18 3254 3138 1807 153 45 29 chrX 3159111 3159238 -173814902 + L1MB3 LINE L1 5796 5919 -264 2357 194 31 82 chrX 3159238 3159883 -173814257 - LTR9 LTR ERV1 0 612 1 1807 153 45 29 chrX 3159883 3160133 -173814007 + L1MB3 LINE L1 5919 6179 -4 186 71 0 0 chrX 3160174 3160202 -173813938 + (CAA)n Simple_repeat Simple_repeat 3 30 0 231 324 59 0 chrX 3161423 3161491 -173812649 + MIR SINE MIR 24 95 -167 1503 134 20 24 chrX 3162093 3162339 -173811801 + AluJb SINE Alu 36 280 -32 689 221 0 6 chrX 3162344 3162516 -173811624 + GA-rich Low_complexity Low_complexity 1 171 0 261 0 0 0 chrX 3162517 3162546 -173811594 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 186 344 74 25 chrX 3163015 3163178 -173810962 + MIR3 SINE MIR 37 207 -1 239 283 33 22 chrX 3163999 3164091 -173810049 - MIR SINE MIR -122 140 48 1449 194 4 0 chrX 3164800 3165047 -173809093 + AluJo SINE Alu 39 286 -26 438 140 30 0 chrX 3165084 3165184 -173808956 + (TA)n Simple_repeat Simple_repeat 1 103 0 390 159 0 0 chrX 3165209 3165278 -173808862 + (TG)n Simple_repeat Simple_repeat 2 70 0 414 0 0 0 chrX 3165407 3165453 -173808687 + (TA)n Simple_repeat Simple_repeat 2 47 0 519 209 6 12 chrX 3166249 3166412 -173807728 + CT-rich Low_complexity Low_complexity 1 162 0 269 185 0 12 chrX 3166427 3166508 -173807632 + CT-rich Low_complexity Low_complexity 2 81 0 680 75 0 0 chrX 3168007 3168101 -173806039 - AluY SINE Alu -13 298 205 243 174 76 65 chrX 3168809 3168901 -173805239 + L1M4 LINE L1 3375 3467 -2679 333 222 42 14 chrX 3169362 3169506 -173804634 + (TA)n Simple_repeat Simple_repeat 2 149 0 283 220 71 64 chrX 3169569 3169710 -173804430 + L1M4 LINE L1 4123 4264 -1882 24 32 0 0 chrX 3169745 3169776 -173804364 + AT_rich Low_complexity Low_complexity 1 31 0 2059 145 0 0 chrX 3169925 3170229 -173803911 + AluSx SINE Alu 1 304 -8 727 153 0 0 chrX 3170450 3170568 -173803572 - FLAM_C SINE Alu -15 118 1 353 290 85 82 chrX 3170779 3171179 -173802961 + L1MB3 LINE L1 4010 4410 -1736 335 167 103 0 chrX 3171221 3171299 -173802841 + L1MB3 LINE L1 4502 4587 -1559 387 125 0 0 chrX 3171302 3171374 -173802766 + (TG)n Simple_repeat Simple_repeat 2 73 0 1813 177 57 0 chrX 3171592 3171981 -173802159 + L1MB3 LINE L1 5770 6180 -3 1064 98 6 0 chrX 3172431 3172595 -173801545 + (GGAA)n Simple_repeat Simple_repeat 3 167 0 33 0 0 0 chrX 3172688 3172721 -173801419 + AT_rich Low_complexity Low_complexity 1 33 0 406 185 39 0 chrX 3173473 3173603 -173800537 + CT-rich Low_complexity Low_complexity 1 135 0 21 0 0 0 chrX 3174017 3174038 -173800102 + AT_rich Low_complexity Low_complexity 1 21 0 1135 183 0 29 chrX 3174038 3174246 -173799894 - AluJo SINE Alu -24 288 87 22 0 0 0 chrX 3174342 3174364 -173799776 + AT_rich Low_complexity Low_complexity 1 22 0 227 31 31 0 chrX 3174448 3174480 -173799660 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 204 250 0 0 chrX 3174676 3174720 -173799420 - MIR SINE MIR 0 262 219 606 182 0 0 chrX 3175083 3175193 -173798947 - L1MA9 LINE L1 -33 6279 6170 1562 154 66 22 chrX 3175378 3175650 -173798490 + AluJb SINE Alu 1 284 -28 311 208 13 0 chrX 3175688 3175765 -173798375 + L1MA7 LINE L1 6210 6287 -4 37 0 0 0 chrX 3175766 3175803 -173798337 + AT_rich Low_complexity Low_complexity 1 37 0 2121 221 0 43 chrX 3176008 3176496 -173797644 + MLT1C LTR MaLR 1 467 0 2726 179 77 11 chrX 3176866 3177425 -173796715 + L1MA3 LINE L1 5545 6140 -165 2851 86 64 24 chrX 3177433 3177853 -173796287 + MLT2A1 LTR ERVL 1 437 -7 765 170 0 25 chrX 3177890 3178049 -173796091 + L1MA3 LINE L1 6151 6305 0 6602 55 2 28 chrX 3178159 3179031 -173795109 - L1PA7 LINE L1 -6 6148 5299 1788 162 18 26 chrX 3179158 3179498 -173794642 + THE1C LTR MaLR 1 337 -38 1097 143 0 0 chrX 3180311 3180500 -173793640 - L1MA3 LINE L1 -3 6302 6114 401 176 0 0 chrX 3180501 3180575 -173793565 + L1MA3 LINE L1 6037 6110 -195 24 0 0 0 chrX 3181657 3181681 -173792459 + AT_rich Low_complexity Low_complexity 1 24 0 34 24 0 0 chrX 3183049 3183090 -173791050 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 3183355 3183376 -173790764 + AT_rich Low_complexity Low_complexity 1 21 0 256 24 24 24 chrX 3183436 3183478 -173790662 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 14239 25 3 0 chrX 3183478 3185929 -173788211 - L1PA3 LINE L1 -2 6153 3697 8472 31 0 1 chrX 3185930 3186973 -173787167 + L1PA3 LINE L1 2650 3691 -2455 262 284 0 0 chrX 3187821 3187916 -173786224 - L1MB8 LINE L1 -2 6176 6082 1098 242 100 24 chrX 3191522 3191955 -173782185 - MLT1C LTR MaLR 0 467 1 310 363 67 9 chrX 3191955 3192178 -173781962 + L1MC5 LINE L1 7666 7901 -60 21 0 0 0 chrX 3192206 3192227 -173781913 + AT_rich Low_complexity Low_complexity 1 21 0 601 153 19 10 chrX 3192229 3192328 -173781812 - L1MA7 LINE L1 -497 5806 5705 2682 136 20 36 chrX 3192328 3192826 -173781314 + L1MA7 LINE L1 5800 6290 -1 601 153 19 10 chrX 3192826 3192842 -173781298 - L1MB8 LINE L1 -598 5705 5691 306 0 0 0 chrX 3192952 3192986 -173781154 + (CA)n Simple_repeat Simple_repeat 2 35 0 621 229 10 47 chrX 3192994 3193186 -173780954 + L1MB5 LINE L1 5980 6164 -10 24 0 0 0 chrX 3193467 3193491 -173780649 + AT_rich Low_complexity Low_complexity 1 24 0 3759 90 14 31 chrX 3193491 3194080 -173780060 - L1MA1 LINE L1 -3 6299 5721 1006 87 67 0 chrX 3194090 3194239 -173779901 - L1MA1 LINE L1 -696 5606 5448 1816 152 16 70 chrX 3194558 3194932 -173779208 - MLT1A1 LTR MaLR 0 365 12 910 229 161 0 chrX 3194939 3195219 -173778921 + MLT1D LTR MaLR 181 505 0 333 323 123 13 chrX 3195954 3196109 -173778031 - MIR SINE MIR -88 174 3 2254 120 22 27 chrX 3196151 3196517 -173777623 - THE1B LTR MaLR 0 364 1 2178 117 10 67 chrX 3196888 3197274 -173776866 + THE1B LTR MaLR 1 364 0 246 62 0 0 chrX 3197392 3197424 -173776716 + (CA)n Simple_repeat Simple_repeat 1 32 0 1517 197 55 0 chrX 3197805 3198094 -173776046 + AluJb SINE Alu 1 305 -7 315 313 172 0 chrX 3198126 3198260 -173775880 - MER5A DNA MER1_type -1 188 32 1361 228 81 29 chrX 3198261 3198705 -173775435 + MLT1C LTR MaLR 1 467 0 1793 219 77 11 chrX 3199860 3200142 -173773998 + MLT1D LTR MaLR 22 309 -158 234 0 0 0 chrX 3200142 3200168 -173773972 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1793 219 77 11 chrX 3200168 3200339 -173773801 + MLT1D LTR MaLR 309 467 0 26 30 0 0 chrX 3201619 3201652 -173772488 + AT_rich Low_complexity Low_complexity 1 33 0 257 237 31 10 chrX 3201699 3201796 -173772344 + (TA)n Simple_repeat Simple_repeat 2 100 0 401 240 91 32 chrX 3201899 3202053 -173772087 - MIR SINE MIR -71 191 29 286 301 65 32 chrX 3202099 3202167 -173771973 + MER5A DNA MER1_type 63 138 -51 2160 55 0 0 chrX 3202167 3202439 -173771701 - L1PA6 LINE L1 -8 6146 5875 286 301 65 32 chrX 3202439 3202493 -173771647 + MER5A DNA MER1_type 138 189 0 1052 234 76 45 chrX 3202848 3203245 -173770895 - MLT1C LTR MaLR 0 467 59 239 95 48 0 chrX 3203254 3203296 -173770844 + (TATG)n Simple_repeat Simple_repeat 2 45 0 637 308 39 4 chrX 3204986 3205220 -173768920 + MIR SINE MIR 18 259 -3 219 215 0 31 chrX 3205517 3205544 -173768596 + (TA)n Simple_repeat Simple_repeat 2 28 -36 2235 85 10 14 chrX 3205544 3205675 -173768465 + AluSx SINE Alu 3 133 -179 2532 57 0 0 chrX 3205675 3205976 -173768164 + AluY SINE Alu 1 301 -10 2235 85 10 14 chrX 3205976 3206138 -173768002 + AluSx SINE Alu 133 295 -17 219 215 0 31 chrX 3206138 3206175 -173767965 + (TA)n Simple_repeat Simple_repeat 28 64 0 24 0 0 0 chrX 3206277 3206301 -173767839 + AT_rich Low_complexity Low_complexity 1 24 0 1974 167 12 6 chrX 3207128 3207469 -173766671 - MER61A LTR ERV1 0 343 1 517 215 35 7 chrX 3207911 3208063 -173766077 - MER58B DNA MER1_type -25 316 33 1121 189 0 32 chrX 3209018 3209235 -173764905 + AluJo SINE Alu 1 210 -102 414 171 98 0 chrX 3209263 3209345 -173764795 + AluJo SINE Alu 192 281 -31 1313 66 0 11 chrX 3209352 3209534 -173764606 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 231 36 0 0 chrX 3209534 3209562 -173764578 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 1082 126 0 11 chrX 3209564 3209746 -173764394 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1837 153 10 7 chrX 3209751 3210051 -173764089 + AluSx SINE Alu 1 301 -11 1371 236 159 14 chrX 3210356 3210797 -173763343 + MLT1D LTR MaLR 1 505 0 270 216 0 0 chrX 3211137 3211153 -173762987 + AluSp SINE Alu 120 135 -168 1565 187 32 7 chrX 3211153 3211436 -173762704 + AluJo SINE Alu 1 290 -22 28 29 0 0 chrX 3211436 3211471 -173762669 + AT_rich Low_complexity Low_complexity 1 35 0 1334 238 116 7 chrX 3211720 3212153 -173761987 + MLT2B1 LTR ERVL 1 480 -40 2016 146 0 10 chrX 3212210 3212511 -173761629 + AluSx SINE Alu 1 298 -14 1082 248 75 9 chrX 3212517 3212839 -173761301 - MER2 DNA MER2_type 0 344 2 306 253 6 22 chrX 3213006 3213188 -173760952 + (TA)n Simple_repeat Simple_repeat 2 180 0 200 318 0 0 chrX 3213191 3213257 -173760883 + (CATA)n Simple_repeat Simple_repeat 1 66 0 321 26 0 0 chrX 3213257 3213295 -173760845 + (TG)n Simple_repeat Simple_repeat 1 38 0 1263 39 0 6 chrX 3213763 3213919 -173760221 - L1PA4 LINE L1 -8 6147 5993 692 194 61 0 chrX 3214709 3214874 -173759266 - MER53 DNA DNA -3 186 12 675 240 23 73 chrX 3215156 3215255 -173758885 - L1M4 LINE L1 -2659 3487 3385 3727 126 0 13 chrX 3215255 3215789 -173758351 - MER1A DNA MER1_type 0 527 1 675 240 23 73 chrX 3215789 3216018 -173758122 - L1M4 LINE L1 -2761 3385 3174 23 33 0 0 chrX 3216319 3216349 -173757791 + AT_rich Low_complexity Low_complexity 1 30 0 3738 152 3 0 chrX 3216375 3216979 -173757161 + L1PA15 LINE L1 5560 6165 0 978 132 0 0 chrX 3217237 3217421 -173756719 + L1PB3 LINE L1 6006 6189 0 4292 138 25 4 chrX 3219118 3219848 -173754292 + L1MA4A LINE L1 5555 6299 -4 2457 88 70 3 chrX 3220394 3220735 -173753405 - THE1B LTR MaLR 0 364 1 358 250 0 0 chrX 3222384 3222464 -173751676 + MLT1E1 LTR MaLR 51 130 -463 965 248 37 25 chrX 3222591 3222887 -173751253 + MLT1E1 LTR MaLR 288 654 0 21 0 0 0 chrX 3223128 3223149 -173750991 + AT_rich Low_complexity Low_complexity 1 21 0 1151 102 11 0 chrX 3223447 3223623 -173750517 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 440 190 0 10 chrX 3223628 3223728 -173750412 + GA-rich Low_complexity Low_complexity 4 102 0 1773 153 52 0 chrX 3223803 3224091 -173750049 + AluSx SINE Alu 3 305 -7 22 0 0 0 chrX 3224263 3224285 -173749855 + AT_rich Low_complexity Low_complexity 1 22 0 1672 194 75 75 chrX 3224349 3224869 -173749271 + MLT2B1 LTR ERVL 1 520 0 1159 257 39 41 chrX 3225219 3225557 -173748583 - MLT1G LTR MaLR -11 579 243 308 328 60 40 chrX 3225817 3226018 -173748122 - L1M4c LINE L1 -4735 1649 1445 23 0 0 0 chrX 3226321 3226344 -173747796 + AT_rich Low_complexity Low_complexity 1 23 0 23 68 0 0 chrX 3227155 3227199 -173746941 + AT_rich Low_complexity Low_complexity 1 44 0 2760 88 0 11 chrX 3227822 3228199 -173745941 - THE1C LTR MaLR 0 375 3 282 289 0 7 chrX 3228256 3228395 -173745745 + CT-rich Low_complexity Low_complexity 1 137 0 * 934 137 6 6 chrX 3228389 3228564 -173745576 + (TTCC)n Simple_repeat Simple_repeat 3 177 0 2202 110 0 3 chrX 3228963 3229273 -173744867 - AluSq SINE Alu -4 309 1 30 0 0 0 chrX 3229655 3229685 -173744455 + AT_rich Low_complexity Low_complexity 1 30 0 2434 161 5 31 chrX 3230906 3231352 -173742788 + Tigger2a DNA MER2_type 1 434 0 2481 101 28 6 chrX 3231761 3232117 -173742023 - THE1B LTR MaLR 0 364 1 193 392 13 0 chrX 3232178 3232257 -173741883 - L2 LINE L2 -27 3286 3207 203 175 0 0 chrX 3232645 3232685 -173741455 + T-rich Low_complexity Low_complexity 1 40 0 1832 246 109 42 chrX 3232996 3233359 -173740781 + L1MC/D LINE L1 1174 1511 -4915 3374 81 0 62 chrX 3233359 3233503 -173740637 + L1PB1 LINE L1 5665 5816 -335 183 42 0 0 chrX 3233503 3233527 -173740613 + (CA)n Simple_repeat Simple_repeat 2 25 0 3374 81 0 62 chrX 3233527 3233899 -173740241 + L1PB1 LINE L1 5816 6149 -2 1832 246 109 42 chrX 3233899 3233923 -173740217 + L1MC/D LINE L1 1511 1532 -4894 1638 133 4 0 chrX 3233923 3234156 -173739984 + AluSq SINE Alu 1 234 -79 1832 246 109 42 chrX 3234156 3234247 -173739893 + L1MC/D LINE L1 1532 1615 -4811 12334 24 0 0 chrX 3234247 3236465 -173737675 + L1PA3 LINE L1 3935 6152 -3 1832 246 109 42 chrX 3236465 3237080 -173737060 + L1MC/D LINE L1 1615 2343 -4083 1778 281 42 81 chrX 3237096 3237475 -173736665 + L1MC/D LINE L1 4070 4462 -1964 2408 53 0 0 chrX 3237475 3237781 -173736359 + AluY SINE Alu 1 306 0 1778 281 42 81 chrX 3237781 3238743 -173735397 + L1MC/D LINE L1 4462 5360 -1066 253 62 62 21 chrX 3238874 3238922 -173735218 - L1MD3 LINE L1 -1165 6830 6781 338 252 0 44 chrX 3238970 3239105 -173735035 - L1M4 LINE L1 -1819 4327 4199 189 195 0 0 chrX 3239123 3239164 -173734976 + (CATA)n Simple_repeat Simple_repeat 4 44 0 227 132 0 0 chrX 3239169 3239207 -173734933 - L1MA9 LINE L1 -82 6230 6193 1837 203 45 25 chrX 3239211 3239793 -173734347 + L1MC/D LINE L1 5386 5983 -743 2543 162 7 4 chrX 3240740 3241196 -173732944 + L1PA16 LINE L1 5710 6166 0 225 183 33 33 chrX 3241794 3241854 -173732286 + GA-rich Low_complexity Low_complexity 4 63 0 252 86 0 0 chrX 3241940 3241975 -173732165 + (T)n Simple_repeat Simple_repeat 1 35 0 1845 74 4 0 chrX 3241986 3242215 -173731925 - AluSp SINE Alu -83 230 1 38 75 0 0 chrX 3242497 3242577 -173731563 + AT_rich Low_complexity Low_complexity 1 80 0 352 222 35 23 chrX 3242582 3242753 -173731387 + (TA)n Simple_repeat Simple_repeat 1 173 0 242 214 38 10 chrX 3242821 3243118 -173731022 + (TA)n Simple_repeat Simple_repeat 1 305 0 330 153 0 0 chrX 3244869 3244928 -173729212 + GA-rich Low_complexity Low_complexity 2 60 0 613 285 29 37 chrX 3244953 3245195 -173728945 - LTR16A1 LTR ERVL 0 457 218 369 263 60 8 chrX 3245334 3245467 -173728673 - LTR16A1 LTR ERVL -100 357 218 477 151 0 0 chrX 3245467 3245553 -173728587 + GA-rich Low_complexity Low_complexity 2 87 0 421 194 68 29 chrX 3245638 3245723 -173728417 + MER20 DNA MER1_type 7 95 -124 1975 149 26 29 chrX 3245723 3246106 -173728034 - LTR8 LTR ERV1 0 691 310 1584 181 6 40 chrX 3246175 3246501 -173727639 - LTR8 LTR ERV1 -376 315 1 462 250 17 8 chrX 3246501 3246621 -173727519 + MER20 DNA MER1_type 95 215 -4 325 316 0 34 chrX 3246635 3246752 -173727388 - LTR16A1 LTR ERVL -342 115 3 6345 47 0 0 chrX 3246828 3247601 -173726539 - L1PA5 LINE L1 0 6154 5382 1808 144 115 11 chrX 3247637 3248042 -173726098 - MER84 LTR ERVI -2 505 1 22 0 0 0 chrX 3248262 3248284 -173725856 + AT_rich Low_complexity Low_complexity 1 22 0 1512 205 98 8 chrX 3249091 3249447 -173724693 + MLT2C1 LTR ERVL 8 395 -2 211 200 16 54 chrX 3249746 3249931 -173724209 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 231 258 0 15 chrX 3249938 3250004 -173724136 + (TCCA)n Simple_repeat Simple_repeat 1 65 0 568 58 58 29 chrX 3250007 3250146 -173723994 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 244 287 149 35 chrX 3250511 3250685 -173723455 - L1MC/D LINE L1 -2172 5636 5443 1914 180 20 9 chrX 3250837 3251181 -173722959 + MER7A DNA MER2_type 1 346 0 351 0 0 0 chrX 3251373 3251412 -173722728 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 61 0 0 chrX 3251412 3251445 -173722695 + (GA)n Simple_repeat Simple_repeat 2 34 0 378 319 70 75 chrX 3251652 3252264 -173721876 - HAL1 LINE L1 -1051 1456 848 320 109 0 18 chrX 3252327 3252382 -173721758 + (TCC)n Simple_repeat Simple_repeat 3 56 0 237 224 0 0 chrX 3252383 3252432 -173721708 + CT-rich Low_complexity Low_complexity 2 50 0 566 135 34 14 chrX 3252525 3252673 -173721467 + CT-rich Low_complexity Low_complexity 1 151 0 189 226 36 0 chrX 3252687 3252771 -173721369 + CT-rich Low_complexity Low_complexity 6 92 0 238 257 38 87 chrX 3253977 3254160 -173719980 - MIR SINE MIR -17 245 72 1804 130 0 50 chrX 3254923 3255222 -173718918 - AluJb SINE Alu -26 286 3 506 302 14 0 chrX 3255227 3255366 -173718774 - MER5B DNA MER1_type -31 147 7 289 173 71 16 chrX 3255890 3256017 -173718123 + (TA)n Simple_repeat Simple_repeat 1 134 0 2421 193 38 24 chrX 3256049 3256583 -173717557 - L1MB4 LINE L1 -40 6140 5600 205 305 46 30 chrX 3256636 3256767 -173717373 - MIR SINE MIR -127 135 3 706 312 20 8 chrX 3257170 3257417 -173716723 + MIR SINE MIR 12 261 -1 343 237 0 0 chrX 3257588 3257664 -173716476 + MLT1F1 LTR MaLR 84 159 -408 1633 170 0 14 chrX 3257680 3257962 -173716178 - AluJo SINE Alu -9 303 26 233 239 0 41 chrX 3258396 3258464 -173715676 - MIR SINE MIR -88 120 61 2426 86 0 0 chrX 3258469 3258771 -173715369 - AluSx SINE Alu -9 303 2 314 305 26 20 chrX 3260178 3260329 -173713811 - L1MC4 LINE L1 -975 7067 6916 556 276 35 44 chrX 3260350 3260665 -173713475 + L1MC5 LINE L1 7087 7398 -563 4217 154 18 11 chrX 3260673 3261382 -173712758 + MER50 LTR ERV1 2 715 -19 292 280 6 12 chrX 3261590 3261758 -173712382 + GA-rich Low_complexity Low_complexity 3 169 0 228 310 0 0 chrX 3262318 3262376 -173711764 + MIR SINE MIR 11 68 -194 271 234 13 26 chrX 3262435 3262512 -173711628 + MIR SINE MIR 174 249 -13 391 231 12 89 chrX 3262637 3262806 -173711334 + MIR SINE MIR 94 249 -13 734 331 33 19 chrX 3263155 3263548 -173710592 - LTR16A LTR ERVL 0 457 52 25 0 0 0 chrX 3264027 3264052 -173710088 + AT_rich Low_complexity Low_complexity 1 25 0 836 178 51 47 chrX 3264198 3264412 -173709728 + AluJo SINE Alu 85 299 -13 228 227 13 53 chrX 3264457 3264532 -173709608 - L1ME4a LINE L1 -100 6021 5950 22 0 0 0 chrX 3264539 3264561 -173709579 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chrX 3265343 3265378 -173708762 + (CA)n Simple_repeat Simple_repeat 2 36 0 215 149 0 21 chrX 3266591 3266638 -173707502 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 335 233 0 7 chrX 3266679 3266825 -173707315 + (TA)n Simple_repeat Simple_repeat 1 145 0 276 30 0 0 chrX 3266825 3266858 -173707282 + (GA)n Simple_repeat Simple_repeat 2 34 0 217 338 0 0 chrX 3267573 3267641 -173706499 + MIR3 SINE MIR 113 180 -28 192 77 0 0 chrX 3270995 3271021 -173703119 + (TG)n Simple_repeat Simple_repeat 2 27 0 1485 176 10 60 chrX 3271021 3271322 -173702818 - AluJo SINE Alu -26 286 1 333 309 19 37 chrX 3271871 3272033 -173702107 + MER3 DNA MER1_type 17 128 -81 221 318 0 0 chrX 3272059 3272125 -173702015 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 206 336 10 0 chrX 3273337 3273441 -173700699 + (TA)n Simple_repeat Simple_repeat 1 105 0 207 0 0 0 chrX 3273441 3273464 -173700676 + (CA)n Simple_repeat Simple_repeat 2 24 0 1620 191 19 3 chrX 3273472 3273786 -173700354 - MER2 DNA MER2_type -25 320 2 304 141 18 61 chrX 3273791 3273954 -173700186 + (TA)n Simple_repeat Simple_repeat 1 156 0 193 130 15 84 chrX 3273972 3274103 -173700037 + (TA)n Simple_repeat Simple_repeat 1 122 0 312 243 23 34 chrX 3274122 3274143 -173699997 + (TA)n Simple_repeat Simple_repeat 1 21 -154 1799 144 3 89 chrX 3274143 3274469 -173699671 + AluSx SINE Alu 1 298 -14 312 243 23 34 chrX 3274469 3274624 -173699516 + (TA)n Simple_repeat Simple_repeat 21 175 0 282 224 0 0 chrX 3274713 3274771 -173699369 + L1MCc LINE L1 -540 4294966813 -6347 276 348 105 20 chrX 3275495 3275846 -173698294 + L1MCc LINE L1 597 977 -4887 41 48 0 0 chrX 3275857 3275919 -173698221 + AT_rich Low_complexity Low_complexity 1 62 0 263 299 82 42 chrX 3276028 3276456 -173697684 + L1MCc LINE L1 1249 1748 -4815 479 261 144 39 chrX 3276490 3276823 -173697317 + L1MCc LINE L1 2696 3063 -3319 225 300 0 12 chrX 3276879 3276959 -173697181 + GA-rich Low_complexity Low_complexity 1 79 0 27 29 0 0 chrX 3276962 3276996 -173697144 + AT_rich Low_complexity Low_complexity 1 34 0 886 249 75 34 chrX 3277055 3277532 -173696608 + L1ME3 LINE L1 5665 6161 -1 349 101 62 23 chrX 3278195 3278324 -173695816 + (TA)n Simple_repeat Simple_repeat 1 134 0 800 274 19 63 chrX 3279518 3279897 -173694243 - L1ME2 LINE L1 -11 6153 5792 2342 75 6 25 chrX 3280029 3280347 -173693793 - AluSx SINE Alu 0 312 1 1866 109 60 0 chrX 3281349 3281661 -173692479 - AluSx SINE Alu 0 328 1 195 222 0 0 chrX 3282137 3282182 -173691958 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 0 0 0 chrX 3282243 3282272 -173691868 + AT_rich Low_complexity Low_complexity 1 29 0 2333 98 131 6 chrX 3282565 3282931 -173691209 + MSTA LTR MaLR 14 425 -3 333 221 168 44 chrX 3282978 3283091 -173691049 - MER58A DNA MER1_type 0 156 30 227 250 0 0 chrX 3283899 3283955 -173690185 + (TG)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 3284434 3284458 -173689682 + AT_rich Low_complexity Low_complexity 1 24 0 1090 262 62 59 chrX 3284745 3285233 -173688907 + MLT1D LTR MaLR 16 504 -1 1977 142 0 34 chrX 3286092 3286415 -173687725 + AluJb SINE Alu 1 312 0 801 103 135 70 chrX 3286478 3286634 -173687506 - L1MC1 LINE L1 0 6333 6168 240 203 203 0 chrX 3286703 3286767 -173687373 - LTR16B LTR ERVL 0 464 388 215 329 0 0 chrX 3286841 3286920 -173687220 + T-rich Low_complexity Low_complexity 4 82 0 2096 151 30 30 chrX 3286935 3287299 -173686841 - THE1B LTR MaLR 0 364 1 1068 133 0 0 chrX 3287338 3287518 -173686622 + (CAT)n Simple_repeat Simple_repeat 1 180 0 195 42 0 0 chrX 3287530 3287554 -173686586 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1734 173 119 61 chrX 3287997 3288407 -173685733 - Tigger2a DNA MER2_type 0 434 1 1279 121 0 0 chrX 3289226 3289399 -173684741 + AluSx SINE Alu 1 173 -139 481 143 11 55 chrX 3289400 3289491 -173684649 + MSTA LTR MaLR 342 428 0 1060 164 180 16 chrX 3289518 3289762 -173684378 - MSTA LTR MaLR -134 294 11 2110 127 0 7 chrX 3290250 3290549 -173683591 - AluSx SINE Alu -15 297 1 1449 81 0 0 chrX 3290575 3290761 -173683379 - L1P LINE L1 -1989 4157 3972 274 265 70 114 chrX 3290903 3291175 -173682965 - MLT1J LTR MaLR -23 488 229 3303 233 31 17 chrX 3291489 3292369 -173681771 - L1MB7 LINE L1 -5 6179 5288 198 258 79 45 chrX 3292750 3292839 -173681301 - L3b LINE CR1 -216 1367 1276 758 233 48 37 chrX 3293791 3293980 -173680160 - MLT1E LTR MaLR -32 561 371 207 311 67 11 chrX 3294263 3294353 -173679787 + L2 LINE L2 2947 3041 -231 1737 146 26 0 chrX 3294471 3294738 -173679402 - AluSx SINE Alu -38 274 1 5476 98 24 17 chrX 3295087 3295747 -173678393 + L1PB1 LINE L1 5299 5968 -183 1978 149 0 7 chrX 3295747 3296048 -173678092 + AluSx SINE Alu 7 305 -7 5476 98 24 17 chrX 3296048 3296227 -173677913 + L1PB1 LINE L1 5968 6144 -7 21 36 0 0 chrX 3296546 3296574 -173677566 + AT_rich Low_complexity Low_complexity 1 28 0 199 146 36 0 chrX 3296975 3297030 -173677110 + T-rich Low_complexity Low_complexity 3 59 0 21 0 0 0 chrX 3297135 3297156 -173676984 + AT_rich Low_complexity Low_complexity 1 21 0 201 286 75 60 chrX 3297160 3297293 -173676847 - MIR SINE MIR -96 166 32 597 99 0 62 chrX 3297957 3298149 -173675991 + (TA)n Simple_repeat Simple_repeat 1 180 0 1693 160 10 10 chrX 3298417 3298724 -173675416 + L1MA8 LINE L1 5750 6056 -235 511 203 8 8 chrX 3298724 3298853 -173675287 + L1MA7 LINE L1 6159 6291 0 557 146 10 10 chrX 3298854 3298957 -173675183 + L1MC3 LINE L1 7682 7784 -1 227 200 50 50 chrX 3299162 3299242 -173674898 + (TATATG)n Simple_repeat Simple_repeat 6 85 0 183 184 0 0 chrX 3299247 3299285 -173674855 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chrX 3300226 3300251 -173673889 + AT_rich Low_complexity Low_complexity 1 25 0 203 291 0 0 chrX 3302241 3302296 -173671844 + (TTA)n Simple_repeat Simple_repeat 2 56 0 2067 147 0 3 chrX 3302367 3302679 -173671461 + AluSx SINE Alu 1 311 -1 445 272 80 0 chrX 3304914 3305039 -173669101 + MIR SINE MIR 84 218 -44 2818 222 39 47 chrX 3306052 3306281 -173667859 + L1MB8 LINE L1 4590 4819 -1359 2472 151 25 23 chrX 3306281 3306713 -173667427 - Tigger2a DNA MER2_type 0 434 2 2818 222 39 47 chrX 3306713 3307351 -173666789 + L1MB8 LINE L1 4819 5428 -750 1846 163 20 0 chrX 3307351 3307645 -173666495 + AluSx SINE Alu 1 300 -12 2818 222 39 47 chrX 3307645 3308186 -173665954 + L1MB8 LINE L1 5428 5972 -206 2183 168 28 30 chrX 3308477 3308983 -173665157 + L1MA8 LINE L1 5780 6284 -7 916 174 54 0 chrX 3309079 3309228 -173664912 - AluJo SINE Alu -27 285 129 723 104 0 0 chrX 3309247 3309353 -173664787 + (TC)n Simple_repeat Simple_repeat 1 106 0 788 173 0 0 chrX 3309353 3309486 -173664654 - AluJo SINE Alu -169 133 1 1827 116 77 116 chrX 3309891 3310244 -173663896 - Charlie3 DNA MER1_type 0 2712 1 443 294 68 0 chrX 3310287 3310450 -173663690 + MLT1D LTR MaLR 68 241 -264 277 321 0 0 chrX 3312116 3312197 -173661943 - MIR SINE MIR -93 169 89 1978 164 3 0 chrX 3312969 3313280 -173660860 + AluSx SINE Alu 1 312 0 334 377 45 36 chrX 3313286 3313623 -173660517 - L1MC4a LINE L1 -1903 5905 5566 2145 121 0 3 chrX 3313877 3314167 -173659973 + AluSx SINE Alu 1 289 -23 446 272 80 0 chrX 3316424 3316549 -173657591 + MIR SINE MIR 84 218 -44 226 281 11 62 chrX 3317472 3317650 -173656490 + MER90 LTR ERV1 1 169 -406 226 319 52 24 chrX 3317753 3317963 -173656177 + MER90 LTR ERV1 382 597 -17 210 158 0 0 chrX 3318014 3318052 -173656088 + T-rich Low_complexity Low_complexity 1 38 0 240 229 84 36 chrX 3318235 3318318 -173655822 + MER5A DNA MER1_type 26 112 -77 329 222 49 0 chrX 3318845 3318926 -173655214 + L2 LINE L2 3188 3272 0 412 271 23 17 chrX 3319059 3319219 -173654921 + (TATATG)n Simple_repeat Simple_repeat 1 159 -460 1409 189 66 0 chrX 3319219 3319537 -173654603 - MER44D DNA MER2_type 0 609 1 412 271 23 17 chrX 3319537 3319555 -173654585 + (TATATG)n Simple_repeat Simple_repeat 159 175 -444 270 0 0 0 chrX 3319555 3319585 -173654555 + (CA)n Simple_repeat Simple_repeat 2 31 0 412 271 23 17 chrX 3319585 3319675 -173654465 + (TATATG)n Simple_repeat Simple_repeat 175 619 0 291 256 23 11 chrX 3319712 3319796 -173654344 + (TA)n Simple_repeat Simple_repeat 2 84 -95 1695 206 21 0 chrX 3319796 3320136 -173654004 - MER7A DNA MER2_type 0 346 2 291 256 23 11 chrX 3320136 3320227 -173653913 + (TA)n Simple_repeat Simple_repeat 84 179 0 237 180 0 0 chrX 3321210 3321260 -173652880 + T-rich Low_complexity Low_complexity 1 50 0 226 244 0 0 chrX 3323013 3323058 -173651082 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 240 163 0 0 chrX 3323704 3323747 -173650393 + CT-rich Low_complexity Low_complexity 3 45 0 726 246 65 5 chrX 3325023 3325222 -173648918 + MER20 DNA MER1_type 9 219 0 265 325 117 21 chrX 3326164 3326352 -173647788 + MIR SINE MIR 47 252 -10 213 179 0 39 chrX 3326548 3326626 -173647514 + (TA)n Simple_repeat Simple_repeat 1 75 0 701 207 14 24 chrX 3328083 3328586 -173645554 + CT-rich Low_complexity Low_complexity 1 497 0 180 158 0 0 chrX 3329872 3329910 -173644230 + T-rich Low_complexity Low_complexity 1 38 0 530 270 17 0 chrX 3329910 3330084 -173644056 - MER113 DNA MER1_type? -213 308 132 1275 242 25 28 chrX 3330323 3330757 -173643383 + MLT1C LTR MaLR 1 433 -34 1905 160 0 22 chrX 3330760 3331078 -173643062 - AluJb SINE Alu 0 312 2 180 179 0 0 chrX 3331851 3331890 -173642250 + (TATG)n Simple_repeat Simple_repeat 1 39 0 409 196 17 12 chrX 3331978 3332151 -173641989 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 31 0 0 chrX 3332153 3332185 -173641955 + AT_rich Low_complexity Low_complexity 1 32 0 1792 158 13 20 chrX 3332315 3332441 -173641699 + AluJo SINE Alu 6 131 -181 1604 178 34 17 chrX 3332441 3332739 -173641401 + AluJo SINE Alu 1 303 -9 1792 158 13 20 chrX 3332739 3332916 -173641224 + AluJo SINE Alu 131 307 -5 336 176 0 0 chrX 3333118 3333186 -173640954 + (TG)n Simple_repeat Simple_repeat 1 68 0 180 0 0 0 chrX 3334276 3334296 -173639844 + (CA)n Simple_repeat Simple_repeat 2 21 0 1415 178 83 14 chrX 3335886 3336162 -173637978 - AluJb SINE Alu -17 295 1 208 294 101 37 chrX 3336546 3336655 -173637485 - MIR3 SINE MIR 0 208 93 189 0 0 0 chrX 3336714 3336735 -173637405 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1676 148 21 17 chrX 3336735 3337015 -173637125 - AluJo SINE Alu -28 284 1 1758 120 8 8 chrX 3337035 3337294 -173636846 + AluSx SINE Alu 38 296 -16 522 222 6 11 chrX 3338080 3338260 -173635880 + GA-rich Low_complexity Low_complexity 1 179 0 389 252 7 0 chrX 3338283 3338434 -173635706 + GA-rich Low_complexity Low_complexity 1 152 0 1394 166 81 8 chrX 3338834 3339081 -173635059 + AluJo SINE Alu 7 271 -41 3077 169 58 36 chrX 3341936 3342276 -173631864 + LTR8A LTR ERV1 1 332 -395 764 125 0 17 chrX 3342276 3342396 -173631744 - L1PA15 LINE L1 -8 6157 6040 3077 169 58 36 chrX 3342396 3342767 -173631373 + LTR8A LTR ERV1 332 727 0 986 139 7 0 chrX 3343287 3343560 -173630580 + GA-rich Low_complexity Low_complexity 1 275 0 21 0 0 0 chrX 3343682 3343703 -173630437 + AT_rich Low_complexity Low_complexity 1 21 0 2702 107 0 0 chrX 3344194 3344558 -173629582 + THE1B LTR MaLR 1 364 0 362 151 14 0 chrX 3345037 3345110 -173629030 + (TA)n Simple_repeat Simple_repeat 2 75 0 2176 122 0 3 chrX 3345999 3346295 -173627845 - AluSx SINE Alu -17 295 1 310 364 54 39 chrX 3346546 3346881 -173627259 + L1MC4a LINE L1 5566 5905 -1903 1978 164 3 0 chrX 3346887 3347198 -173626942 - AluSx SINE Alu 0 312 1 277 321 0 0 chrX 3347970 3348051 -173626089 + MIR SINE MIR 89 169 -93 397 301 68 0 chrX 3349717 3349880 -173624260 - MLT1D LTR MaLR -264 241 68 1722 116 77 116 chrX 3349923 3350276 -173623864 + Charlie3 DNA MER1_type 1 2712 0 512 259 145 0 chrX 3350294 3350522 -173623618 - L1M4 LINE L1 -849 5297 5037 321 359 107 20 chrX 3350590 3351077 -173623063 - L2 LINE L2 -339 2975 2447 314 80 20 0 chrX 3351579 3351629 -173622511 + (TA)n Simple_repeat Simple_repeat 1 51 0 533 28 14 0 chrX 3351837 3351908 -173622232 + (GA)n Simple_repeat Simple_repeat 2 73 0 183 306 82 35 chrX 3352083 3352168 -173621972 + MER5B DNA MER1_type 36 124 -54 1538 124 0 0 chrX 3352695 3352936 -173621204 + L1MA5A LINE L1 6051 6291 -6 1997 117 6 22 chrX 3353027 3353343 -173620797 + AluSx SINE Alu 2 312 0 387 227 28 14 chrX 3353418 3353559 -173620581 - L1MB4 LINE L1 -38 6142 6000 1551 143 16 91 chrX 3353568 3353876 -173620264 - AluJb SINE Alu -16 296 12 2020 130 95 18 chrX 3353876 3354214 -173619926 - THE1B LTR MaLR 0 364 1 2860 103 2 7 chrX 3355034 3355461 -173618679 + L1PB1 LINE L1 5727 6151 0 292 292 21 21 chrX 3355611 3355707 -173618433 - MER5B DNA MER1_type -22 156 61 226 348 118 56 chrX 3355882 3356043 -173618097 - MER5A DNA MER1_type -9 180 10 816 65 0 0 chrX 3356462 3356569 -173617571 + (TA)n Simple_repeat Simple_repeat 2 108 0 560 278 90 75 chrX 3356596 3356618 -173617522 - L1MC5 LINE L1 -748 7213 7193 2129 145 24 19 chrX 3356618 3356991 -173617149 + THE1C LTR MaLR 1 375 0 560 278 90 75 chrX 3356991 3357356 -173616784 - L1MC5 LINE L1 -768 7193 6820 330 26 0 0 chrX 3357421 3357460 -173616680 + (CA)n Simple_repeat Simple_repeat 1 39 0 434 33 17 0 chrX 3357556 3357616 -173616524 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chrX 3357666 3357691 -173616449 + (TATG)n Simple_repeat Simple_repeat 3 27 0 184 365 50 25 chrX 3358407 3358566 -173615574 + L2 LINE L2 2308 2470 -844 883 144 0 8 chrX 3359484 3359616 -173614524 - FLAM_A SINE Alu -1 132 2 23 33 0 0 chrX 3359745 3359775 -173614365 + AT_rich Low_complexity Low_complexity 1 30 0 2014 94 33 14 chrX 3359814 3360089 -173614051 + AluSx SINE Alu 1 280 -32 213 121 0 0 chrX 3360137 3360170 -173613970 + (TA)n Simple_repeat Simple_repeat 1 33 0 1084 216 52 79 chrX 3360305 3360780 -173613360 - MER39 LTR ERV1 0 687 24 299 358 22 17 chrX 3360961 3361140 -173613000 + MER5A DNA MER1_type 1 180 -9 306 294 159 33 chrX 3363313 3363735 -173610405 + HAL1 LINE L1 1112 1586 -921 1374 143 4 44 chrX 3364658 3364910 -173609230 - L1MA9 LINE L1 -284 6028 5787 685 266 0 33 chrX 3365186 3365370 -173608770 + MLT1E2 LTR MaLR 431 608 -18 549 330 132 18 chrX 3365536 3366090 -173608050 + L1ME3A LINE L1 3508 4124 -2022 399 317 96 28 chrX 3366116 3366510 -173607630 + L1ME3A LINE L1 5521 5941 -229 1654 139 12 8 chrX 3367712 3367970 -173606170 - AluJo SINE Alu -20 292 34 243 297 17 114 chrX 3368183 3368358 -173605782 + L2 LINE L2 3151 3308 -5 202 304 14 0 chrX 3368639 3368708 -173605432 + (TTCGGG)n Simple_repeat Simple_repeat 6 75 0 22 0 0 0 chrX 3369465 3369487 -173604653 + AT_rich Low_complexity Low_complexity 1 22 0 369 75 0 0 chrX 3369565 3369618 -173604522 + (TG)n Simple_repeat Simple_repeat 2 54 0 186 171 0 0 chrX 3369986 3370027 -173604113 + (CA)n Simple_repeat Simple_repeat 2 42 0 1717 163 6 41 chrX 3371458 3371778 -173602362 + AluJo SINE Alu 1 309 -3 468 0 0 0 chrX 3371804 3371856 -173602284 + (TG)n Simple_repeat Simple_repeat 2 53 0 1808 183 0 3 chrX 3372596 3372908 -173601232 + AluJo SINE Alu 1 311 -1 1508 152 134 0 chrX 3373033 3373302 -173600838 + AluSx SINE Alu 2 306 -6 258 156 0 0 chrX 3373302 3373347 -173600793 + G-rich Low_complexity Low_complexity 1 45 0 1213 223 79 112 chrX 3373500 3374145 -173599995 + MLT1E2 LTR MaLR 1 626 0 1544 197 9 22 chrX 3374988 3375303 -173598837 + AluJo SINE Alu 1 311 -1 297 302 101 27 chrX 3375448 3375597 -173598543 + MIR SINE MIR 32 191 -71 1238 107 31 0 chrX 3376295 3376491 -173597649 + L1PA13 LINE L1 5893 6094 -69 742 258 5 21 chrX 3376691 3376881 -173597259 - MER20 DNA MER1_type -2 217 31 4384 118 3 6 chrX 3377304 3377963 -173596177 - L1PA13 LINE L1 -11 6152 5496 604 291 103 56 chrX 3379340 3379808 -173594332 - MLT1H1 LTR MaLR 0 555 66 230 313 0 0 chrX 3379947 3380014 -173594126 + MER117 DNA MER1_type 87 153 -44 966 269 62 0 chrX 3380801 3381106 -173593034 + MER33 DNA MER1_type 1 324 0 1556 181 61 3 chrX 3382144 3382470 -173591670 - MLT1A1 LTR MaLR 0 365 21 439 308 108 29 chrX 3382735 3383050 -173591090 - L2 LINE L2 -1423 1891 1552 651 170 26 46 chrX 3383286 3383439 -173590701 - MLT2C1 LTR ERVL -55 342 193 1615 186 7 17 chrX 3383709 3384004 -173590136 + AluJo SINE Alu 1 292 -20 1265 172 4 0 chrX 3384004 3384237 -173589903 + L1MA3 LINE L1 6071 6304 -1 1788 140 3 40 chrX 3384849 3385149 -173588991 - AluJo SINE Alu -18 294 6 480 89 0 0 chrX 3385213 3385292 -173588848 + (TC)n Simple_repeat Simple_repeat 2 80 0 296 149 53 9 chrX 3386742 3386856 -173587284 + (TA)n Simple_repeat Simple_repeat 1 119 0 272 48 24 0 chrX 3387573 3387615 -173586525 + (TG)n Simple_repeat Simple_repeat 2 44 0 247 290 0 0 chrX 3387617 3387686 -173586454 + GA-rich Low_complexity Low_complexity 2 70 0 938 9 0 9 chrX 3391600 3391775 -173582365 - AluY SINE Alu 0 345 172 1792 169 11 55 chrX 3393230 3393609 -173580531 + MLT1A1 LTR MaLR 4 365 0 2190 229 14 27 chrX 3393609 3394128 -173580012 + MLT1A1-int LTR MaLR 1 512 -1223 1555 182 10 40 chrX 3395136 3395433 -173578707 - AluJo SINE Alu -24 288 1 275 219 41 41 chrX 3395886 3395959 -173578181 - LTR16C LTR ERVL -1 490 418 180 0 0 0 chrX 3399055 3399075 -173575065 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 459 0 0 0 chrX 3399074 3399125 -173575015 + (TG)n Simple_repeat Simple_repeat 2 52 0 7277 41 1 1 chrX 3399610 3400801 -173573339 + L1PA4 LINE L1 4962 6152 -3 1095 15 8 0 chrX 3400836 3400967 -173573173 + L1PA5 LINE L1 6023 6154 0 341 419 16 0 chrX 3401499 3401683 -173572457 - L3 LINE CR1 -11 1566 1380 848 253 78 32 chrX 3402550 3403024 -173571116 - L1ME3 LINE L1 -2 6160 5665 27 29 0 0 chrX 3403083 3403117 -173571023 + AT_rich Low_complexity Low_complexity 1 34 0 225 300 0 12 chrX 3403120 3403200 -173570940 + CT-rich Low_complexity Low_complexity 1 79 0 479 261 144 39 chrX 3403256 3403589 -173570551 - L1MCc LINE L1 -3319 3622 3255 263 299 82 42 chrX 3403623 3404051 -173570089 - L1MCc LINE L1 -4815 2307 1808 41 48 0 0 chrX 3404159 3404221 -173569919 + AT_rich Low_complexity Low_complexity 1 62 0 276 348 105 20 chrX 3404232 3404583 -173569557 - L1MCc LINE L1 -4887 1536 1156 282 224 0 0 chrX 3405307 3405365 -173568775 - L1MCc LINE L1 -6347 76 19 305 277 22 7 chrX 3405444 3405581 -173568559 + (TA)n Simple_repeat Simple_repeat 2 140 0 1887 157 0 7 chrX 3405609 3405903 -173568237 - AluSx SINE Alu -14 298 7 4367 92 5 17 chrX 3405920 3406563 -173567577 - L1PB1 LINE L1 -218 5933 5299 1737 146 26 0 chrX 3406912 3407179 -173566961 + AluSx SINE Alu 1 274 -38 208 297 66 22 chrX 3407297 3407388 -173566752 - L2 LINE L2 -231 3041 2947 758 233 48 37 chrX 3407672 3407861 -173566279 + MLT1E LTR MaLR 371 561 -32 198 258 79 45 chrX 3408813 3408902 -173565238 + L3b LINE CR1 1276 1367 -216 723 183 59 6 chrX 3409270 3409458 -173564682 + L1MB4 LINE L1 5272 5474 -696 192 77 0 0 chrX 3410967 3410993 -173563147 + (TG)n Simple_repeat Simple_repeat 2 27 0 1589 163 10 60 chrX 3410993 3411294 -173562846 - AluJo SINE Alu -26 286 1 1361 240 116 7 chrX 3411352 3411785 -173562355 - MLT2B1 LTR ERVL -40 480 1 1582 182 30 23 chrX 3412050 3412352 -173561788 - AluJo SINE Alu -8 304 1 1414 236 159 14 chrX 3412708 3413149 -173560991 - MLT1D LTR MaLR 0 505 1 1843 153 10 7 chrX 3413453 3413753 -173560387 - AluSx SINE Alu -11 301 1 953 144 0 11 chrX 3413758 3413938 -173560202 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 396 230 11 6 chrX 3413942 3414120 -173560020 + CT-rich Low_complexity Low_complexity 2 180 0 235 264 50 16 chrX 3414809 3414930 -173559210 + (TGGG)n Simple_repeat Simple_repeat 2 126 0 * 493 251 34 17 chrX 3414842 3415017 -173559123 + G-rich Low_complexity Low_complexity 2 179 0 561 213 0 0 chrX 3415028 3415192 -173558948 + G-rich Low_complexity Low_complexity 1 164 0 205 338 0 0 chrX 3415959 3416027 -173558113 - MIR3 SINE MIR -28 180 113 201 321 46 30 chrX 3417607 3417738 -173556402 + MIR SINE MIR 3 135 -127 2490 195 38 24 chrX 3417791 3418325 -173555815 + L1MB4 LINE L1 5600 6140 -40 28 61 0 0 chrX 3418356 3418405 -173555735 + AT_rich Low_complexity Low_complexity 1 49 0 197 0 0 67 chrX 3418979 3419009 -173555131 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 27 29 0 0 chrX 3419146 3419180 -173554960 + GC_rich Low_complexity Low_complexity 1 34 0 287 216 57 34 chrX 3419400 3419488 -173554652 - LTR4 LTR ERV1 -500 96 7 * 587 203 138 91 chrX 3419472 3419764 -173554376 + LTR1B LTR ERV1 487 745 -81 1111 252 86 45 chrX 3420093 3420558 -173553582 + LTR1 LTR ERV1 2 485 -300 580 207 18 65 chrX 3420561 3420778 -173553362 - LTR4 LTR ERV1 0 596 390 280 260 21 62 chrX 3421072 3421168 -173552972 - LTR4 LTR ERV1 -479 117 26 273 98 0 0 chrX 3421309 3421350 -173552790 + (CA)n Simple_repeat Simple_repeat 1 41 0 231 238 19 9 chrX 3421509 3421614 -173552526 + (TA)n Simple_repeat Simple_repeat 2 107 0 516 273 61 6 chrX 3421722 3421887 -173552253 + REP3 LTR ERV 389 562 0 1253 195 84 15 chrX 3422168 3422289 -173551851 + AluJo SINE Alu 1 112 -200 270 0 0 0 chrX 3422289 3422319 -173551821 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1253 195 84 15 chrX 3422319 3422459 -173551681 + AluJo SINE Alu 112 280 -32 225 163 0 0 chrX 3422706 3422755 -173551385 + G-rich Low_complexity Low_complexity 1 49 0 204 97 0 0 chrX 3422903 3422934 -173551206 + (G)n Simple_repeat Simple_repeat 1 31 0 366 369 0 0 chrX 3422966 3423142 -173550998 + G-rich Low_complexity Low_complexity 1 176 0 289 292 4 8 chrX 3424046 3424217 -173549923 + C-rich Low_complexity Low_complexity 1 170 0 676 183 56 16 chrX 3426213 3426339 -173547801 + FLAM_A SINE Alu 2 132 -1 217 314 0 14 chrX 3426577 3426647 -173547493 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 183 129 0 0 chrX 3426659 3426690 -173547450 + (CATA)n Simple_repeat Simple_repeat 2 32 0 258 222 0 0 chrX 3426942 3426996 -173547144 - L1MA5 LINE L1 -198 6102 6049 482 79 13 0 chrX 3427781 3427857 -173546283 + (TC)n Simple_repeat Simple_repeat 1 77 0 347 344 0 6 chrX 3427859 3428067 -173546073 + C-rich Low_complexity Low_complexity 1 206 0 206 279 0 25 chrX 3428175 3428333 -173545807 + C-rich Low_complexity Low_complexity 6 159 0 21 0 0 0 chrX 3428790 3428811 -173545329 + AT_rich Low_complexity Low_complexity 1 21 0 1472 194 17 17 chrX 3430797 3431090 -173543050 + AluJo SINE Alu 17 309 -3 2178 103 7 7 chrX 3431112 3431403 -173542737 - AluSq SINE Alu -21 292 2 1281 186 68 15 chrX 3431661 3431925 -173542215 + AluJo SINE Alu 1 278 -34 724 181 129 0 chrX 3431926 3432081 -173542059 + L1PA16 LINE L1 5983 6157 -9 28 29 0 0 chrX 3432081 3432116 -173542024 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chrX 3432145 3432185 -173541955 + AT_rich Low_complexity Low_complexity 1 40 0 2161 129 0 0 chrX 3432642 3432944 -173541196 + AluSx SINE Alu 1 302 -10 186 43 0 0 chrX 3432970 3432993 -173541147 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 183 259 0 0 chrX 3434604 3434662 -173539478 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 1004 323 56 37 chrX 3436780 3437347 -173536793 + L2 LINE L2 1050 1627 -1687 774 330 8 42 chrX 3437431 3437788 -173536352 + MLT1I LTR MaLR 63 407 -2 405 313 96 36 chrX 3437799 3438080 -173536060 + L2 LINE L2 1648 1945 -1369 1298 279 151 19 chrX 3438194 3439000 -173535140 + L2 LINE L2 1943 2855 -459 2278 115 63 17 chrX 3439021 3439369 -173534771 + THE1B LTR MaLR 1 364 0 2300 115 29 3 chrX 3439770 3440118 -173534022 + L1MA3 LINE L1 5947 6303 -2 27 22 0 22 chrX 3440334 3440354 -173533786 + AT_rich Low_complexity Low_complexity 1 20 -24 2064 115 31 3 chrX 3440354 3440640 -173533500 - AluSg SINE Alu -16 294 1 27 22 0 22 chrX 3440640 3440664 -173533476 + AT_rich Low_complexity Low_complexity 20 44 0 32 43 0 0 chrX 3440706 3440752 -173533388 + AT_rich Low_complexity Low_complexity 1 46 0 214 152 55 18 chrX 3440755 3440920 -173533220 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 346 191 52 17 chrX 3440946 3441119 -173533021 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 237 166 70 0 chrX 3441130 3441287 -173532853 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 21 57 0 0 chrX 3441438 3441473 -173532667 + AT_rich Low_complexity Low_complexity 1 35 0 204 125 0 0 chrX 3441590 3441622 -173532518 + (GA)n Simple_repeat Simple_repeat 1 32 0 3525 86 27 5 chrX 3442095 3442538 -173531602 + MLT2A2 LTR ERVL 1 453 0 233 265 12 24 chrX 3442644 3442700 -173531440 + (CATATA)n Simple_repeat Simple_repeat 2 58 -25 2593 121 14 16 chrX 3442700 3443065 -173531075 + THE1B LTR MaLR 1 364 0 233 265 12 24 chrX 3443065 3443091 -173531049 + (CATATA)n Simple_repeat Simple_repeat 58 83 0 828 78 95 0 chrX 3445646 3445669 -173528471 - L1MA2 LINE L1 -6 6298 6279 201 74 0 0 chrX 3445669 3445696 -173528444 + (TA)n Simple_repeat Simple_repeat 1 27 0 828 78 95 0 chrX 3445696 3445788 -173528352 - L1MA2 LINE L1 -25 6279 6172 447 256 8 8 chrX 3445792 3445913 -173528227 + Charlie4a DNA MER1_type 14 134 -374 384 256 40 24 chrX 3445924 3446049 -173528091 + Charlie4a DNA MER1_type 209 335 -173 832 173 0 7 chrX 3446073 3446212 -173527928 - FLAM_C SINE Alu 0 143 6 295 257 44 37 chrX 3446229 3446365 -173527775 + Charlie4a DNA MER1_type 352 488 -20 1874 181 7 0 chrX 3446610 3446919 -173527221 + AluJb SINE Alu 1 311 -1 1248 155 17 26 chrX 3448360 3448592 -173525548 - AluJo SINE Alu -82 230 1 900 155 0 0 chrX 3448592 3448721 -173525419 - AluJb SINE Alu -17 295 167 985 137 0 10 chrX 3449831 3450079 -173524061 - AluJb SINE Alu -16 296 1 620 284 12 12 chrX 3450123 3450292 -173523848 + MER5B DNA MER1_type 4 172 -6 316 288 33 79 chrX 3450366 3450606 -173523534 - HAL1 LINE L1 0 2507 2279 1839 183 0 0 chrX 3450649 3450944 -173523196 - AluJb SINE Alu -17 295 1 866 297 82 35 chrX 3451265 3451589 -173522551 - HAL1 LINE L1 -711 1796 1434 2624 118 64 10 chrX 3451589 3451995 -173522145 + MSTA LTR MaLR 1 428 0 866 297 82 35 chrX 3451995 3452233 -173521907 - HAL1 LINE L1 -1073 1434 1208 2870 126 29 6 chrX 3453080 3453558 -173520582 + MER39B LTR ERV1 1 489 -164 5047 129 15 44 chrX 3453567 3453596 -173520544 + L1PA16 LINE L1 5303 5331 -835 1883 128 14 14 chrX 3453596 3453919 -173520221 + AluSx SINE Alu 1 323 0 5047 129 15 44 chrX 3453919 3454759 -173519381 + L1PA16 LINE L1 5331 6148 -18 790 174 38 38 chrX 3454759 3454943 -173519197 + MER39B LTR ERV1 470 653 0 2075 171 96 19 chrX 3455430 3455846 -173518294 + LTR29 LTR ERV1 175 622 0 710 184 0 70 chrX 3455857 3456015 -173518125 + LTR29-int LTR ERV1 10 156 -6175 335 191 16 0 chrX 3456015 3456078 -173518062 + LTR29 LTR ERV1 559 622 0 578 261 44 54 chrX 3456113 3456206 -173517934 + MIR SINE MIR 61 153 -109 1658 205 84 70 chrX 3456206 3456703 -173517437 + MLT1D LTR MaLR 1 504 -1 578 261 44 54 chrX 3456703 3456812 -173517328 + MIR SINE MIR 153 261 -1 2245 112 0 22 chrX 3456973 3457286 -173516854 - AluSx SINE Alu -6 306 1 2325 143 28 3 chrX 3457594 3457950 -173516190 + MLT1A1 LTR MaLR 1 365 0 1363 172 62 44 chrX 3458642 3458915 -173515225 + AluJo SINE Alu 1 278 -34 270 0 0 0 chrX 3458920 3458950 -173515190 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 216 143 0 0 chrX 3460387 3460429 -173513711 + (TG)n Simple_repeat Simple_repeat 1 42 0 515 273 22 57 chrX 3460609 3460757 -173513383 - MER20 DNA MER1_type 0 219 67 3845 144 2 0 chrX 3460757 3461340 -173512800 - L1PB4 LINE L1 -7 6149 5566 4128 147 1 0 chrX 3460762 3461428 -173512712 - L1PB4 LINE L1 -12 6144 5478 515 273 22 57 chrX 3461340 3461501 -173512639 - MER20 DNA MER1_type -152 67 1 21 0 0 0 chrX 3462552 3462573 -173511567 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chrX 3463067 3463099 -173511041 + (TG)n Simple_repeat Simple_repeat 1 32 0 1361 240 85 9 chrX 3463243 3463677 -173510463 + MLT1C LTR MaLR 1 467 0 23 54 0 0 chrX 3463690 3463727 -173510413 + AT_rich Low_complexity Low_complexity 1 37 0 364 220 11 0 chrX 3463737 3463828 -173510312 - L1MA9 LINE L1 -34 6278 6187 230 200 77 15 chrX 3464055 3464120 -173510020 + MIR3 SINE MIR 115 183 -25 184 293 104 9 chrX 3464757 3464863 -173509277 - L2 LINE L2 -21 3251 3136 643 229 133 0 chrX 3465349 3465515 -173508625 - MER5A DNA MER1_type -1 188 1 213 238 0 0 chrX 3465709 3465751 -173508389 - L2 LINE L2 -11 3302 3261 199 354 77 39 chrX 3466011 3466141 -173507999 - L2 LINE L2 -1 3271 3137 839 273 83 29 chrX 3466258 3466788 -173507352 - MLT1F1 LTR MaLR 0 567 2 1997 152 10 0 chrX 3467513 3467816 -173506324 + AluJb SINE Alu 5 310 -2 351 206 109 91 chrX 3469024 3469144 -173504996 + MIR SINE MIR 67 192 -70 1763 177 43 0 chrX 3469144 3469267 -173504873 + AluJo SINE Alu 1 117 -195 183 42 0 0 chrX 3469267 3469291 -173504849 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1763 177 43 0 chrX 3469291 3469466 -173504674 + AluJo SINE Alu 117 312 0 351 206 109 91 chrX 3469466 3469520 -173504620 + MIR SINE MIR 192 244 -18 186 397 65 9 chrX 3469596 3469810 -173504330 + L2 LINE L2 2750 2975 -339 1984 138 7 3 chrX 3472065 3472361 -173501779 - AluJb SINE Alu -15 297 1 1511 181 0 36 chrX 3472571 3472848 -173501292 + AluJb SINE Alu 1 267 -45 2535 46 0 3 chrX 3473561 3473864 -173500276 - AluY SINE Alu 0 311 10 1455 201 7 31 chrX 3474046 3474339 -173499801 + AluJo SINE Alu 1 286 -26 28 29 0 0 chrX 3474340 3474375 -173499765 + AT_rich Low_complexity Low_complexity 1 35 0 483 314 53 0 chrX 3474785 3474954 -173499186 + MIR SINE MIR 37 214 -48 1059 99 0 0 chrX 3475003 3475155 -173498985 + L1PA8 LINE L1 6020 6171 -1 394 160 13 0 chrX 3475870 3475945 -173498195 - MADE1 DNA Mariner -4 76 1 1061 151 0 6 chrX 3475955 3476114 -173498026 - AluJb SINE Alu -25 287 130 2338 44 41 0 chrX 3476709 3477003 -173497137 - AluY SINE Alu -5 306 1 181 245 80 123 chrX 3477592 3477715 -173496425 + MIR SINE MIR 71 187 -75 1986 143 10 0 chrX 3477715 3478008 -173496132 + AluJo SINE Alu 1 296 -16 181 245 80 123 chrX 3478008 3478047 -173496093 + MIR SINE MIR 187 226 -36 2084 130 0 0 chrX 3478271 3478555 -173495585 - AluSx SINE Alu -17 295 12 1152 105 0 0 chrX 3478566 3478709 -173495431 - AluSq/x SINE Alu -169 144 2 410 188 12 0 chrX 3480370 3480450 -173493690 - AluSc SINE Alu -56 253 173 1601 94 0 0 chrX 3480517 3480719 -173493421 - AluSx SINE Alu -90 222 21 259 285 183 38 chrX 3481033 3481405 -173492735 + L2 LINE L2 943 1368 -1946 259 210 97 0 chrX 3481549 3481611 -173492529 + L2 LINE L2 1934 2001 -1313 1664 318 127 20 chrX 3481934 3483136 -173491004 + L2 LINE L2 1975 3311 -2 325 288 159 0 chrX 3483495 3483658 -173490482 - Charlie8 DNA MER1_type -2137 280 92 643 181 78 0 chrX 3483949 3484065 -173490075 + FRAM SINE Alu 3 127 -49 306 275 0 44 chrX 3484199 3484290 -173489850 + L2 LINE L2 3185 3271 -1 487 266 34 17 chrX 3484390 3484567 -173489573 - MIR SINE MIR -31 231 52 21 36 0 0 chrX 3485016 3485044 -173489096 + AT_rich Low_complexity Low_complexity 1 28 0 336 102 0 0 chrX 3485044 3485093 -173489047 + (CA)n Simple_repeat Simple_repeat 2 50 0 2223 115 16 0 chrX 3486137 3486441 -173487699 - AluSx SINE Alu -2 310 2 26 0 0 0 chrX 3486580 3486606 -173487534 + AT_rich Low_complexity Low_complexity 1 26 0 467 339 76 49 chrX 3486884 3487292 -173486848 + HAL1b LINE L1 115 1617 -816 208 238 8 57 chrX 3487744 3487866 -173486274 + A-rich Low_complexity Low_complexity 4 119 0 28 48 0 0 chrX 3487950 3487992 -173486148 + AT_rich Low_complexity Low_complexity 1 42 0 244 155 42 28 chrX 3488137 3488208 -173485932 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 2028 121 0 0 chrX 3488308 3488590 -173485550 + AluSx SINE Alu 1 282 -30 226 207 0 35 chrX 3488700 3488758 -173485382 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 499 275 39 30 chrX 3488998 3489336 -173484804 + L1M4 LINE L1 2940 3280 -2866 471 336 73 83 chrX 3489404 3490485 -173483655 + L1M4 LINE L1 3296 4372 -1774 337 242 31 39 chrX 3490962 3491090 -173483050 + LTR33 LTR ERVL 94 220 -301 2199 109 10 0 chrX 3491242 3491535 -173482605 + AluSg SINE Alu 1 296 -14 249 277 99 21 chrX 3491580 3491721 -173482419 + L1M4 LINE L1 4942 5093 -1053 527 176 7 110 chrX 3491890 3492026 -173482114 - FLAM_A SINE Alu -11 122 1 436 339 32 56 chrX 3492553 3492682 -173481458 - L1PA16 LINE L1 -253 5868 5737 1500 141 41 19 chrX 3492682 3492952 -173481188 + L1PA16 LINE L1 5881 6156 -10 436 339 32 56 chrX 3492952 3493200 -173480940 - L1ME4a LINE L1 -384 5737 5500 1816 163 3 16 chrX 3494013 3494319 -173479821 - AluJo SINE Alu -10 302 1 672 221 67 39 chrX 3496029 3496237 -173477903 - MER20 DNA MER1_type -5 214 1 740 162 54 18 chrX 3496286 3496453 -173477687 - MER20 DNA MER1_type 0 219 47 977 220 23 19 chrX 3496525 3496739 -173477401 - MER20 DNA MER1_type -4 215 1 197 266 65 81 chrX 3496979 3497103 -173477037 - L2 LINE L2 -868 2446 2325 783 192 0 0 chrX 3497195 3497372 -173476768 + (CAT)n Simple_repeat Simple_repeat 2 178 0 389 286 56 16 chrX 3497732 3497858 -173476282 - MER5A DNA MER1_type -11 178 48 946 237 27 5 chrX 3497968 3498187 -173475953 - MER58A DNA MER1_type 0 224 1 224 292 0 15 chrX 3498689 3498754 -173475386 + L2 LINE L2 3250 3313 0 716 121 0 121 chrX 3500202 3500351 -173473789 - FRAM SINE Alu -22 154 24 1501 262 82 35 chrX 3500390 3500902 -173473238 - MLT1E LTR MaLR -3 590 55 1299 242 77 41 chrX 3501148 3501590 -173472550 - MLT1C LTR MaLR -9 458 1 25 31 0 0 chrX 3502277 3502309 -173471831 + AT_rich Low_complexity Low_complexity 1 32 0 670 307 18 53 chrX 3502593 3502714 -173471426 + L2 LINE L2 3041 3165 -148 1478 191 10 37 chrX 3502714 3503013 -173471127 + AluJo SINE Alu 1 291 -21 670 307 18 53 chrX 3503013 3503174 -173470966 + L2 LINE L2 3165 3313 0 3418 140 2 4 chrX 3504253 3504809 -173469331 + L1PA15 LINE L1 5611 6165 0 218 157 59 20 chrX 3504885 3504936 -173469204 + A-rich Low_complexity Low_complexity 5 57 0 2193 118 0 3 chrX 3506026 3506331 -173467809 + AluSg SINE Alu 1 304 -6 1856 164 0 28 chrX 3506348 3506666 -173467474 + AluJo SINE Alu 1 309 -3 22 56 0 0 chrX 3508491 3508527 -173465613 + AT_rich Low_complexity Low_complexity 1 36 0 2308 88 3 7 chrX 3508531 3508836 -173465304 + AluY SINE Alu 1 304 -7 930 186 6 51 chrX 3509985 3510162 -173463978 + AluJo SINE Alu 1 169 -143 1568 169 55 44 chrX 3510162 3510528 -173463612 - THE1C LTR MaLR 0 375 6 664 168 67 0 chrX 3510533 3510652 -173463488 + AluJo SINE Alu 165 291 -21 258 214 0 0 chrX 3512034 3512090 -173462050 + L1MB3 LINE L1 6077 6132 -51 184 281 16 16 chrX 3512719 3512783 -173461357 + L2 LINE L2 3209 3272 0 458 163 92 0 chrX 3513173 3513271 -173460869 + L1MB3 LINE L1 6077 6183 0 185 365 29 19 chrX 3514023 3514127 -173460013 - MIR SINE MIR -50 212 108 215 229 0 0 chrX 3514255 3514303 -173459837 - MIR SINE MIR -66 142 95 224 250 0 0 chrX 3514492 3514536 -173459604 - L2 LINE L2 -12 3260 3217 2386 184 12 5 chrX 3514929 3515358 -173458782 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chrX 3516627 3516655 -173457485 + AT_rich Low_complexity Low_complexity 1 28 0 440 18 18 0 chrX 3516703 3516760 -173457380 + (TG)n Simple_repeat Simple_repeat 1 58 0 1419 188 73 4 chrX 3516760 3517021 -173457119 - AluJo SINE Alu -33 279 1 312 316 101 40 chrX 3517510 3517788 -173456352 + L2 LINE L2 3019 3313 0 2215 121 21 37 chrX 3518214 3518595 -173455545 + THE1C LTR MaLR 1 375 0 207 350 21 10 chrX 3518729 3518826 -173455314 + MIR SINE MIR 99 196 -66 335 330 144 8 chrX 3518837 3519101 -173455039 + L2 LINE L2 3013 3312 -1 251 250 26 40 chrX 3519092 3519168 -173454972 + MIR SINE MIR 188 262 0 * 1315 162 97 65 chrX 3520269 3520439 -173453701 - AluJo SINE Alu -11 301 117 1829 170 3 0 chrX 3520439 3520728 -173453412 + AluJb SINE Alu 1 290 -22 1315 162 97 65 chrX 3520728 3520847 -173453293 - AluJo SINE Alu -195 117 3 1817 171 0 16 chrX 3521687 3521992 -173452148 + AluJo SINE Alu 2 301 -11 2587 39 7 3 chrX 3522381 3522690 -173451450 - AluY SINE Alu -1 310 1 707 211 46 17 chrX 3522724 3522899 -173451241 + MSTD LTR MaLR 215 394 -2 474 328 134 31 chrX 3523122 3523665 -173450475 - L2 LINE L2 -833 2481 1883 471 198 18 79 chrX 3524035 3524307 -173449833 + MSTD LTR MaLR 3 320 -76 426 20 0 0 chrX 3526462 3526513 -173447627 + (CA)n Simple_repeat Simple_repeat 1 51 0 1635 193 3 3 chrX 3526587 3526883 -173447257 - AluJb SINE Alu -8 304 9 2147 111 23 7 chrX 3527555 3527862 -173446278 + AluSx SINE Alu 1 312 0 307 306 175 22 chrX 3529131 3529314 -173444826 - MIR SINE MIR -7 255 45 733 212 20 0 chrX 3529720 3529866 -173444274 + AluJo SINE Alu 3 151 -161 733 169 0 0 chrX 3529995 3530119 -173444021 + AluJo SINE Alu 156 279 -33 22 35 0 0 chrX 3530143 3530172 -173443968 + AT_rich Low_complexity Low_complexity 1 29 0 1018 197 96 60 chrX 3530413 3530839 -173443301 - MLT1D LTR MaLR -4 501 73 214 280 20 0 chrX 3531035 3531085 -173443055 + L2 LINE L2 3248 3298 -15 1778 183 27 0 chrX 3531855 3532155 -173441985 + AluJo SINE Alu 1 308 -4 2052 122 0 17 chrX 3532806 3533102 -173441038 - AluSx SINE Alu -17 295 5 2419 92 0 0 chrX 3533657 3533962 -173440178 - AluSc SINE Alu -4 305 1 24 0 0 0 chrX 3536014 3536038 -173438102 + AT_rich Low_complexity Low_complexity 1 24 0 1545 172 52 7 chrX 3537095 3537385 -173436755 - AluJo SINE Alu -8 304 2 239 309 12 12 chrX 3537395 3537476 -173436664 + L2 LINE L2 3227 3307 -6 211 196 87 0 chrX 3537805 3537851 -173436289 + MIR SINE MIR 92 141 -67 193 235 78 0 chrX 3538768 3538819 -173435321 + L2 LINE L2 3201 3255 -17 833 261 23 5 chrX 3539178 3539393 -173434747 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chrX 3539820 3539841 -173434299 + AT_rich Low_complexity Low_complexity 1 21 0 4440 129 13 16 chrX 3540958 3541377 -173432763 + L1PA16 LINE L1 5408 5826 -340 2599 48 3 0 chrX 3541377 3541687 -173432453 + AluY SINE Alu 1 311 0 4440 129 13 16 chrX 3541687 3542019 -173432121 + L1PA16 LINE L1 5826 6157 -9 2233 138 40 8 chrX 3542406 3542805 -173431335 + MSTA LTR MaLR 17 428 0 29 0 0 0 chrX 3543579 3543608 -173430532 + AT_rich Low_complexity Low_complexity 1 29 0 1718 152 176 16 chrX 3543615 3543984 -173430156 - MSTC LTR MaLR 0 428 1 1295 190 19 16 chrX 3544695 3545119 -173429021 + MLT1D LTR MaLR 7 485 -20 2367 79 3 3 chrX 3545455 3545760 -173428380 + AluY SINE Alu 1 305 -6 435 245 0 10 chrX 3548350 3548452 -173425688 - MER58B DNA MER1_type -9 332 232 272 338 15 15 chrX 3548791 3548924 -173425216 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 364 249 106 53 chrX 3549061 3549250 -173424890 - L1ME LINE L1 -415 5706 5508 237 83 0 0 chrX 3549300 3549336 -173424804 + (TAAAA)n Simple_repeat Simple_repeat 4 39 0 260 296 163 52 chrX 3550340 3550475 -173423665 + L2 LINE L2 3123 3272 0 203 317 0 0 chrX 3550941 3551001 -173423139 + L2 LINE L2 3249 3308 -5 211 271 122 19 chrX 3551358 3551465 -173422675 + MIR SINE MIR 28 145 -63 23 86 0 0 chrX 3551742 3551800 -173422340 + AT_rich Low_complexity Low_complexity 1 58 0 952 193 14 40 chrX 3552233 3552456 -173421684 + MER20 DNA MER1_type 3 219 0 183 222 0 0 chrX 3552478 3552523 -173421617 + GA-rich Low_complexity Low_complexity 4 48 0 * 286 130 0 58 chrX 3552516 3552585 -173421555 + (GGAA)n Simple_repeat Simple_repeat 1 65 0 204 284 14 14 chrX 3552595 3552669 -173421471 + GA-rich Low_complexity Low_complexity 2 75 0 190 340 47 0 chrX 3552698 3552804 -173421336 - MIR SINE MIR -62 200 90 261 245 25 6 chrX 3553373 3553536 -173420604 + CT-rich Low_complexity Low_complexity 4 169 0 412 191 9 18 chrX 3553746 3553856 -173420284 + CT-rich Low_complexity Low_complexity 4 112 0 351 282 40 24 chrX 3554281 3554405 -173419735 + L1MEd LINE L1 1004 1129 -5401 440 282 74 45 chrX 3554489 3554856 -173419284 + L1MEd LINE L1 1293 1649 -4881 231 272 39 19 chrX 3555021 3555124 -173419016 + L1MEd LINE L1 1865 1969 -4571 396 295 48 39 chrX 3555955 3556200 -173417940 + L1MEd LINE L1 3336 3577 -2963 253 293 75 0 chrX 3556336 3556442 -173417698 + MER81 DNA DNA 1 114 0 462 36 0 0 chrX 3556913 3556969 -173417171 + (TG)n Simple_repeat Simple_repeat 2 57 0 676 222 116 25 chrX 3557475 3557673 -173416467 + MER20 DNA MER1_type 4 219 0 270 0 0 0 chrX 3558765 3558795 -173415345 + (TG)n Simple_repeat Simple_repeat 2 31 0 451 276 63 9 chrX 3558831 3559052 -173415088 - L1M4 LINE L1 -3597 2549 2317 1669 144 16 53 chrX 3559830 3560150 -173413990 + AluJo SINE Alu 5 312 0 589 214 231 6 chrX 3560762 3560935 -173413205 - MER20 DNA MER1_type -1 218 7 286 354 16 8 chrX 3560938 3561065 -173413075 + L2 LINE L2 3186 3313 0 215 151 38 57 chrX 3561430 3561483 -173412657 + L2 LINE L2 3220 3271 -1 3445 98 22 4 chrX 3561683 3562185 -173411955 - MER9 LTR ERVK 0 511 1 227 245 187 36 chrX 3562536 3562675 -173411465 - L2 LINE L2 0 3313 3154 22 56 0 0 chrX 3562862 3562898 -173411242 + AT_rich Low_complexity Low_complexity 1 36 0 198 167 0 0 chrX 3563039 3563075 -173411065 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 1465 143 17 28 chrX 3563084 3563137 -173411003 + MLT1A1 LTR MaLR 1 53 -321 4171 99 9 41 chrX 3563137 3563629 -173410511 + L1MA2 LINE L1 5649 6115 -189 2368 78 0 3 chrX 3563629 3563924 -173410216 - AluY SINE Alu -17 294 1 4171 99 9 41 chrX 3563924 3564109 -173410031 + L1MA2 LINE L1 6115 6304 0 1465 143 17 28 chrX 3564109 3564366 -173409774 + MLT1A1 LTR MaLR 53 292 -82 529 170 7 7 chrX 3564450 3564597 -173409543 + (CATA)n Simple_repeat Simple_repeat 2 148 0 210 167 64 26 chrX 3564598 3564676 -173409464 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 214 222 32 16 chrX 3565795 3565858 -173408282 + (TG)n Simple_repeat Simple_repeat 1 64 0 180 0 0 0 chrX 3566342 3566362 -173407778 + (TC)n Simple_repeat Simple_repeat 2 21 0 1832 136 0 0 chrX 3566881 3567132 -173407008 - AluSx SINE Alu -18 294 44 653 228 91 9 chrX 3567866 3568085 -173406055 - MER46C DNA MER2_type -101 237 1 1781 147 6 26 chrX 3568272 3568612 -173405528 - L1MC1 LINE L1 -260 6073 5741 2332 182 7 2 chrX 3569357 3569814 -173404326 - L1PA16 LINE L1 0 6166 5708 24 0 0 0 chrX 3570145 3570169 -173403971 + AT_rich Low_complexity Low_complexity 1 24 0 1742 146 31 17 chrX 3570207 3570318 -173403822 + AluJb SINE Alu 11 119 -193 207 0 0 0 chrX 3570318 3570341 -173403799 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1742 146 31 17 chrX 3570341 3570516 -173403624 + AluJb SINE Alu 119 301 -11 216 390 20 30 chrX 3570591 3570691 -173403449 + L2 LINE L2 2979 3077 -195 1707 185 3 19 chrX 3570793 3571101 -173403039 + AluJo SINE Alu 1 303 -9 21 0 0 0 chrX 3572354 3572375 -173401765 + AT_rich Low_complexity Low_complexity 1 21 0 252 59 0 0 chrX 3572814 3572848 -173401292 + (CCCTAA)n Simple_repeat Simple_repeat 3 36 0 1208 163 154 86 chrX 3573016 3573269 -173400871 + MLT1A1 LTR MaLR 4 287 -78 1625 192 0 24 chrX 3573269 3573560 -173400580 + AluJo SINE Alu 1 284 -28 1208 163 154 86 chrX 3573560 3573643 -173400497 + MLT1A1 LTR MaLR 287 363 -2 396 227 13 53 chrX 3573971 3574121 -173400019 + L1PA16 LINE L1 6007 6150 -16 918 178 11 0 chrX 3574191 3574376 -173399764 + L1MC3 LINE L1 6951 7137 -648 1307 96 0 11 chrX 3574382 3574560 -173399580 - AluSg/x SINE Alu 0 312 137 2309 211 57 10 chrX 3574560 3575187 -173398953 + L1MC3 LINE L1 7129 7785 0 1239 136 60 23 chrX 3575613 3575914 -173398226 - AluSx SINE Alu 0 312 1 208 310 17 0 chrX 3576727 3576785 -173397355 + MIR SINE MIR 30 88 -120 218 320 10 31 chrX 3577769 3577866 -173396274 + L2 LINE L2 3173 3267 -5 1530 192 3 10 chrX 3580211 3580502 -173393638 - AluJo SINE Alu -23 289 1 2216 97 7 0 chrX 3580768 3581068 -173393072 - AluY SINE Alu -9 302 1 184 250 19 0 chrX 3581319 3581371 -173392769 + L2 LINE L2 1703 1755 -1559 309 89 0 0 chrX 3582502 3582547 -173391593 + (TG)n Simple_repeat Simple_repeat 1 45 0 323 218 20 30 chrX 3582662 3582763 -173391377 - MLT1A1 LTR MaLR -263 102 3 238 276 79 0 chrX 3582780 3582856 -173391284 - L2 LINE L2 -47 3266 3185 186 314 29 14 chrX 3582887 3582957 -173391183 + L2 LINE L2 3188 3258 -14 338 252 161 13 chrX 3583350 3583505 -173390635 + L1ME1 LINE L1 5355 5532 -634 2091 63 47 20 chrX 3583541 3583841 -173390299 - L1PA11 LINE L1 0 6174 5867 256 268 89 21 chrX 3583852 3584042 -173390098 + L1ME1 LINE L1 5711 5913 -253 927 174 0 18 chrX 3584164 3584331 -173389809 - AluJo SINE Alu -108 204 41 354 143 0 0 chrX 3584438 3584501 -173389639 + (TG)n Simple_repeat Simple_repeat 2 64 0 775 130 0 9 chrX 3584586 3584701 -173389439 + FRAM SINE Alu 42 155 -21 236 191 106 21 chrX 3584943 3585037 -173389103 + L1MC5 LINE L1 7452 7553 -408 2124 122 3 0 chrX 3586181 3586476 -173387664 + AluSx SINE Alu 1 296 -16 2174 243 75 13 chrX 3587091 3587856 -173386284 + L1MC3 LINE L1 6974 7785 0 766 158 8 0 chrX 3588832 3588959 -173385181 + FLAM_C SINE Alu 2 129 -4 2329 84 7 0 chrX 3589486 3589782 -173384358 + AluSp SINE Alu 1 298 -15 341 262 68 0 chrX 3589788 3589891 -173384249 + MIR3 SINE MIR 94 203 -5 2078 107 57 0 chrX 3590096 3590376 -173383764 - AluSx SINE Alu -14 298 3 1400 199 34 38 chrX 3591009 3591300 -173382840 - AluJo SINE Alu -22 290 1 185 180 20 0 chrX 3591403 3591453 -173382687 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 3591588 3591616 -173382524 + AT_rich Low_complexity Low_complexity 1 28 0 315 0 0 0 chrX 3592693 3592728 -173381412 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 224 30 0 chrX 3593230 3593297 -173380843 + (TA)n Simple_repeat Simple_repeat 1 69 0 309 183 0 0 chrX 3593334 3593394 -173380746 + (TA)n Simple_repeat Simple_repeat 1 60 0 929 158 0 16 chrX 3593522 3593705 -173380435 + CT-rich Low_complexity Low_complexity 1 180 0 844 168 6 6 chrX 3593724 3593903 -173380237 + CT-rich Low_complexity Low_complexity 1 179 0 240 318 68 11 chrX 3595062 3595150 -173378990 - L2 LINE L2 -291 2981 2889 23 33 0 0 chrX 3595795 3595825 -173378315 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 3596963 3597007 -173377133 + AT_rich Low_complexity Low_complexity 1 44 0 2057 126 7 0 chrX 3597099 3597384 -173376756 + AluSx SINE Alu 1 287 -25 219 114 0 0 chrX 3598129 3598164 -173375976 + (TG)n Simple_repeat Simple_repeat 2 36 0 1869 243 50 24 chrX 3598182 3598885 -173375255 - L1M4 LINE L1 -1304 4842 4122 763 264 10 40 chrX 3598986 3599289 -173374851 + L1MEc LINE L1 514 807 -5589 1542 114 13 9 chrX 3599317 3599545 -173374595 + AluSg/x SINE Alu 77 305 -7 572 280 88 15 chrX 3599568 3599707 -173374433 + L1MEc LINE L1 936 1063 -5152 453 19 0 0 chrX 3599707 3599761 -173374379 + (CA)n Simple_repeat Simple_repeat 2 55 0 572 280 88 15 chrX 3599761 3600018 -173374122 + L1MEc LINE L1 1063 1361 -4854 2048 104 11 21 chrX 3600108 3600395 -173373745 + AluY SINE Alu 1 284 -27 216 0 0 0 chrX 3600395 3600419 -173373721 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 803 267 58 16 chrX 3600448 3600811 -173373329 + L1MEc LINE L1 1601 1978 -4418 1016 257 85 26 chrX 3600823 3601282 -173372858 + L1M4 LINE L1 3673 4158 -1988 340 295 18 36 chrX 3601816 3601928 -173372212 - L1MC4 LINE L1 -1319 6723 6614 1636 249 96 41 chrX 3601931 3602143 -173371997 - MLT2F LTR ERVL -44 619 420 1834 190 22 3 chrX 3602143 3602501 -173371639 + MLT1A1 LTR MaLR 1 365 0 1636 249 96 41 chrX 3602501 3602871 -173371269 - MLT2F LTR ERVL -243 420 5 542 299 19 52 chrX 3603818 3603944 -173370196 - MIR SINE MIR -22 240 122 2326 93 0 13 chrX 3603944 3604254 -173369886 + AluSc SINE Alu 1 306 -3 542 299 19 52 chrX 3604254 3604338 -173369802 - MIR SINE MIR -140 122 37 230 226 139 26 chrX 3604575 3604690 -173369450 + L1MEc LINE L1 44 171 -6225 978 246 139 3 chrX 3604935 3605252 -173368888 - MLT1A1 LTR MaLR -5 360 1 2397 113 52 0 chrX 3605717 3606063 -173368077 - THE1B LTR MaLR 0 364 1 1679 180 34 55 chrX 3606276 3606714 -173367426 + L1MC3 LINE L1 6673 7101 -684 1825 118 33 13 chrX 3606738 3607042 -173367098 + MSTA LTR MaLR 118 427 -1 1112 137 49 0 chrX 3607043 3607247 -173366893 + L1MC3 LINE L1 7099 7312 -473 1725 151 3 34 chrX 3607581 3607879 -173366261 + AluJb SINE Alu 3 291 -21 222 132 59 29 chrX 3607888 3607956 -173366184 + (TA)n Simple_repeat Simple_repeat 1 70 0 2252 73 39 3 chrX 3607967 3608253 -173365887 + AluSc SINE Alu 1 296 -13 1565 194 18 7 chrX 3608286 3608569 -173365571 + AluJo SINE Alu 1 286 -26 390 91 0 0 chrX 3608570 3608625 -173365515 + (CA)n Simple_repeat Simple_repeat 2 56 0 2003 98 42 0 chrX 3608658 3608943 -173365197 - AluSq SINE Alu -16 297 1 2062 155 0 0 chrX 3608951 3609247 -173364893 - AluSx SINE Alu -16 296 1 814 310 30 11 chrX 3609633 3609904 -173364236 + MLT1E LTR MaLR 280 555 -38 1222 204 5 14 chrX 3610513 3610734 -173363406 - MER20 DNA MER1_type 0 219 1 228 256 61 12 chrX 3610878 3610960 -173363180 - MER20B DNA MER1_type -633 150 65 366 23 0 0 chrX 3611302 3611345 -173362795 + (TG)n Simple_repeat Simple_repeat 1 43 0 2029 152 0 0 chrX 3611432 3611741 -173362399 - AluSx SINE Alu -2 310 2 414 161 35 0 chrX 3611748 3611835 -173362305 - L1MB3 LINE L1 0 6183 6094 294 125 0 0 chrX 3612429 3612477 -173361663 + (TC)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 3612480 3612519 -173361621 + (CA)n Simple_repeat Simple_repeat 1 39 0 4109 26 11 0 chrX 3612962 3613429 -173360711 - L1PA4 LINE L1 -3 6152 5681 2019 134 7 16 chrX 3613595 3613902 -173360238 - AluSx SINE Alu -7 305 2 1960 156 0 9 chrX 3614540 3614855 -173359285 - AluSx SINE Alu 0 312 1 210 71 0 0 chrX 3614984 3615012 -173359128 + (GA)n Simple_repeat Simple_repeat 2 29 0 304 289 68 55 chrX 3615457 3615679 -173358461 + MER106B DNA MER1_type 7 1058 -1 1962 150 0 3 chrX 3615847 3616153 -173357987 + AluJo SINE Alu 1 305 -7 1276 284 26 7 chrX 3616220 3616643 -173357497 + MER63B DNA MER1_type 6 436 0 1356 186 12 0 chrX 3617119 3617501 -173356639 + L1P4 LINE L1 5096 5480 -686 1698 168 46 7 chrX 3618928 3619213 -173354927 + AluJo SINE Alu 1 296 -16 1616 190 3 3 chrX 3620986 3621275 -173352865 - AluJb SINE Alu -23 289 1 214 143 32 16 chrX 3622083 3622146 -173351994 + CT-rich Low_complexity Low_complexity 1 64 0 1648 141 0 77 chrX 3622160 3622477 -173351663 - AluJo SINE Alu 0 450 165 2024 118 40 0 chrX 3622477 3622773 -173351367 - AluSq SINE Alu -5 308 1 1648 141 0 77 chrX 3622773 3622915 -173351225 - AluJo SINE Alu -285 165 14 834 236 75 30 chrX 3623083 3623378 -173350762 + MER58 DNA MER1_type 12 2420 0 2604 173 24 4 chrX 3625355 3625807 -173348333 - L1PA16 LINE L1 0 6166 5706 201 74 0 0 chrX 3626211 3626238 -173347902 + (TG)n Simple_repeat Simple_repeat 2 28 0 221 238 12 0 chrX 3626242 3626322 -173347818 + (CA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chrX 3627053 3627076 -173347064 + AT_rich Low_complexity Low_complexity 1 23 0 432 282 99 15 chrX 3627262 3627472 -173346668 + MLT1E1 LTR MaLR 15 244 -410 1645 235 121 50 chrX 3627541 3628095 -173346045 + MLT1E LTR MaLR 1 593 0 1099 293 56 58 chrX 3629208 3629727 -173344413 - MLT1E LTR MaLR -5 588 102 339 209 32 0 chrX 3629718 3629791 -173344349 - MLT1E LTR MaLR -430 137 64 * 360 298 43 31 chrX 3629969 3630130 -173344010 + MIR3 SINE MIR 44 206 -2 1073 212 23 46 chrX 3630192 3630499 -173343641 + MER33 DNA MER1_type 15 314 -10 250 337 12 65 chrX 3631202 3631371 -173342769 + MER5B DNA MER1_type 19 178 0 21 0 0 0 chrX 3631710 3631731 -173342409 + AT_rich Low_complexity Low_complexity 1 21 0 1057 149 8 2 chrX 3632004 3632194 -173341946 + L1PA16 LINE L1 5646 5835 -331 637 278 45 18 chrX 3632311 3632534 -173341606 - LTR16B LTR ERVL -231 233 5 1653 137 9 0 chrX 3632935 3633213 -173340927 - L1PA16 LINE L1 -196 5959 5669 1210 129 144 0 chrX 3633206 3633407 -173340733 + L1PA16 LINE L1 5928 6157 -9 * 688 414 99 39 chrX 3633811 3634193 -173339947 - MLT1C LTR MaLR -60 407 3 221 56 0 28 chrX 3634969 3635005 -173339135 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 626 65 0 2 chrX 3635005 3635090 -173339050 - L1PA3 LINE L1 -20 6148 6059 537 263 120 62 chrX 3635601 3636069 -173338071 - L1MC/D LINE L1 -1986 5822 5328 1839 155 10 0 chrX 3636183 3636480 -173337660 - MLT1B LTR MaLR 0 390 91 1753 188 14 51 chrX 3636484 3636701 -173337439 - MER2 DNA MER2_type -1 344 144 1798 180 30 35 chrX 3636701 3637040 -173337100 - MER1B DNA MER1_type 0 337 1 1753 188 14 51 chrX 3637040 3637178 -173336962 - MER2 DNA MER2_type -201 144 2 415 197 13 0 chrX 3637179 3637255 -173336885 - MLT1B LTR MaLR -303 87 11 1025 231 14 24 chrX 3637293 3637558 -173336582 + MLT2C1 LTR ERVL 99 429 -35 225 191 55 45 chrX 3637584 3637694 -173336446 + (TATAA)n Simple_repeat Simple_repeat 4 114 0 250 138 0 31 chrX 3637695 3637760 -173336380 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 232 130 65 43 chrX 3637771 3637863 -173336277 + (TA)n Simple_repeat Simple_repeat 2 95 0 202 155 50 37 chrX 3637957 3638118 -173336022 + (TA)n Simple_repeat Simple_repeat 1 163 0 1107 135 0 12 chrX 3638129 3638292 -173335848 - AluJb SINE Alu -18 294 134 253 140 0 140 chrX 3638306 3638363 -173335777 + MLT2C1 LTR ERVL 354 397 0 3050 76 95 0 chrX 3638569 3638978 -173335162 - LTR7 LTR ERV1 -2 448 1 2179 106 70 14 chrX 3638978 3639347 -173334793 - HERVH LTR ERV1 0 7713 7324 1430 119 18 9 chrX 3639347 3639565 -173334575 - HERVH LTR ERV1 -1894 5819 5600 4431 138 1 1 chrX 3639566 3640228 -173333912 - HERVH LTR ERV1 -2564 5149 4488 3522 97 4 4 chrX 3640230 3640724 -173333416 - HERVH LTR ERV1 -3720 3993 3500 869 155 20 0 chrX 3640723 3640871 -173333269 - HERVH LTR ERV1 -4423 3290 3140 * 20331 92 14 23 chrX 3640865 3643880 -173330260 - HERVH LTR ERV1 -4726 2987 1 3065 73 95 0 chrX 3643882 3644291 -173329849 - LTR7 LTR ERV1 -2 448 1 1532 196 96 25 chrX 3644417 3644780 -173329360 - MLT1B LTR MaLR -1 389 1 189 0 0 0 chrX 3646931 3646952 -173327188 + (GA)n Simple_repeat Simple_repeat 2 22 0 225 323 0 0 chrX 3648266 3648328 -173325812 + L2 LINE L2 3209 3270 -2 184 280 147 87 chrX 3648715 3648865 -173325275 - MIR SINE MIR -91 171 13 470 274 144 45 chrX 3649038 3649239 -173324901 - MLT1E LTR MaLR -206 387 167 314 289 24 0 chrX 3649270 3649353 -173324787 - MLT1E LTR MaLR -457 85 1 2303 114 33 43 chrX 3649600 3649968 -173324172 - THE1B LTR MaLR 0 364 1 443 63 16 0 chrX 3650047 3650110 -173324030 + (ATG)n Simple_repeat Simple_repeat 2 65 0 199 301 217 18 chrX 3650472 3650638 -173323502 - MIR SINE MIR -1 261 63 203 284 11 23 chrX 3651401 3651489 -173322651 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 693 308 101 27 chrX 3651552 3652026 -173322114 + Tigger8 DNA MER2_type 149 657 -9 23 33 0 0 chrX 3652123 3652153 -173321987 + AT_rich Low_complexity Low_complexity 1 30 0 2807 94 8 6 chrX 3652197 3652560 -173321580 - THE1B LTR MaLR 0 364 1 1729 173 0 10 chrX 3652898 3653193 -173320947 - AluJo SINE Alu -13 299 8 24 32 0 0 chrX 3654109 3654140 -173320000 + AT_rich Low_complexity Low_complexity 1 31 0 2240 106 0 3 chrX 3654272 3654564 -173319576 - AluSc SINE Alu -18 291 1 186 234 0 21 chrX 3655522 3655569 -173318571 + MER5A DNA MER1_type 11 56 -133 257 98 0 78 chrX 3655573 3655624 -173318516 - L1P LINE L1 -729 5427 5381 * 3331 179 20 38 chrX 3655620 3655673 -173318467 + L1MA4A LINE L1 5442 5494 -809 2232 113 3 3 chrX 3655673 3655984 -173318156 + AluSx SINE Alu 1 311 -1 3331 179 20 38 chrX 3655984 3656623 -173317517 + L1MA4A LINE L1 5494 6122 -181 451 196 11 0 chrX 3656626 3656723 -173317417 + L1MA4A LINE L1 6058 6278 -1 219 250 296 0 chrX 3656735 3656823 -173317317 + MER5A DNA MER1_type 63 176 -13 1442 247 80 30 chrX 3657398 3657896 -173316244 - Charlie1b DNA MER1_type 0 523 1 254 239 0 0 chrX 3658065 3658111 -173316029 - MER45 DNA AcHobo -21 1560 1515 1305 116 5 53 chrX 3658117 3658324 -173315816 + AluJo SINE Alu 87 283 -29 268 82 20 20 chrX 3658326 3658375 -173315765 + (TA)n Simple_repeat Simple_repeat 2 50 0 323 167 12 60 chrX 3658375 3658459 -173315681 - MER45 DNA AcHobo -74 104 46 776 332 48 45 chrX 3658534 3659049 -173315091 - L1MCc LINE L1 -5245 1178 662 2097 156 47 32 chrX 3659171 3659715 -173314425 - MLT2A2 LTR ERVL 0 554 1 951 123 7 52 chrX 3659818 3659972 -173314168 - AluJo SINE Alu -9 303 157 633 159 9 9 chrX 3659972 3660079 -173314061 - AluJo SINE Alu -204 108 2 461 270 48 16 chrX 3660079 3660205 -173313935 - L1MCc LINE L1 -5953 470 341 495 233 50 133 chrX 3660217 3660616 -173313524 - LTR37A LTR ERV1 -11 415 50 253 289 164 19 chrX 3660669 3660828 -173313312 - L1MCc LINE L1 -6076 347 166 240 35 0 0 chrX 3661585 3661614 -173312526 + (T)n Simple_repeat Simple_repeat 1 29 0 1524 151 6 61 chrX 3662582 3662759 -173311381 - AluJo SINE Alu -2 310 156 2240 106 0 7 chrX 3662759 3663062 -173311078 - AluSg SINE Alu -9 301 1 1524 151 6 61 chrX 3663062 3663195 -173310945 - AluJo SINE Alu -156 156 17 449 323 25 12 chrX 3663250 3663411 -173310729 + MIR SINE MIR 31 193 -69 1804 166 3 19 chrX 3664421 3664735 -173309405 - AluJo SINE Alu -3 309 1 237 219 32 73 chrX 3665153 3665276 -173308864 - HAL1b LINE L1 -899 449 332 262 342 41 82 chrX 3665878 3666147 -173307993 + L2 LINE L2 2824 3081 -191 213 286 82 20 chrX 3666569 3666667 -173307473 - MIR SINE MIR -54 208 105 1569 185 66 44 chrX 3667347 3667709 -173306431 - MLT1A2 LTR MaLR 0 374 5 5705 84 1 1 chrX 3667757 3668448 -173305692 - LTR8 LTR ERV1 0 691 1 207 0 0 0 chrX 3669031 3669054 -173305086 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2865 92 19 17 chrX 3669054 3669459 -173304681 - L1PA10 LINE L1 -17 6151 5743 1412 232 92 22 chrX 3669582 3669807 -173304333 - MSTD LTR MaLR 0 396 133 2152 95 0 3 chrX 3669807 3670141 -173303999 + AluSg1 SINE Alu 1 333 0 1412 232 92 22 chrX 3670141 3670284 -173303856 - MSTD LTR MaLR -263 133 1 1870 161 17 0 chrX 3670299 3670598 -173303542 + AluJo SINE Alu 1 304 -8 2217 121 0 6 chrX 3670598 3670912 -173303228 + AluSx SINE Alu 1 312 0 402 250 169 7 chrX 3671358 3671506 -173302634 + MLT1J1 LTR MaLR 3 174 -272 263 209 48 48 chrX 3671732 3671837 -173302303 + MLT1J1 LTR MaLR 342 446 0 4157 156 11 0 chrX 3671972 3672600 -173301540 - MER41B LTR ERV1 0 635 1 1906 140 0 11 chrX 3672769 3673047 -173301093 + AluSx SINE Alu 2 276 -36 1209 270 108 14 chrX 3673146 3673329 -173300811 + L1MC4 LINE L1 6468 6632 -1410 3551 146 47 17 chrX 3673329 3673931 -173300209 + LTR29 LTR ERV1 1 620 -2 1209 270 108 14 chrX 3673931 3674247 -173299893 + L1MC4 LINE L1 6632 7014 -1028 2245 79 3 8 chrX 3674249 3674610 -173299530 + LTR7 LTR ERV1 1 448 -2 237 247 0 54 chrX 3674612 3674705 -173299435 + L1MC4 LINE L1 7012 7099 -943 * 240 212 15 15 chrX 3674676 3674742 -173299398 + L1MC4a LINE L1 7152 7217 -591 1577 71 5 0 chrX 3674742 3674940 -173299200 + MLT2A2 LTR ERVL 1 199 -254 3153 62 2 107 chrX 3674942 3675292 -173298848 + MLT2A1 LTR ERVL 1 386 -58 2745 85 8 3 chrX 3675292 3675645 -173298495 + THE1A LTR MaLR 1 355 0 3153 62 2 107 chrX 3675645 3675709 -173298431 + MLT2A1 LTR ERVL 386 358 -86 2375 87 3 0 chrX 3675709 3676009 -173298131 - AluSp SINE Alu -12 301 1 3153 62 2 107 chrX 3676009 3676089 -173298051 + MLT2A1 LTR ERVL 357 444 0 1112 132 22 7 chrX 3676089 3676404 -173297736 + MLT2A2 LTR ERVL 197 449 -4 330 232 0 0 chrX 3676408 3676477 -173297663 + L1MC3 LINE L1 7200 7268 -517 1318 138 24 55 chrX 3676762 3677016 -173297124 - LTR8 LTR ERV1 0 691 446 3117 136 25 34 chrX 3677019 3677549 -173296591 - MER61E LTR ERV1 -44 525 1 2798 129 4 62 chrX 3677549 3678031 -173296109 - LTR8 LTR ERV1 -237 454 1 2068 92 13 46 chrX 3678064 3678370 -173295770 - AluSq SINE Alu -15 298 3 387 279 43 63 chrX 3678727 3678981 -173295159 + L1M4 LINE L1 4399 4647 -1499 195 277 0 0 chrX 3679217 3679282 -173294858 + (TA)n Simple_repeat Simple_repeat 1 65 0 3433 148 33 11 chrX 3679743 3680285 -173293855 + MER41C LTR ERV1 1 554 0 1763 204 29 34 chrX 3680589 3681006 -173293134 - L1MB8 LINE L1 -37 6141 5727 1669 265 91 28 chrX 3680997 3681647 -173292493 - L1MB8 LINE L1 -1433 4713 4023 * 21 0 0 0 chrX 3681995 3682016 -173292124 + AT_rich Low_complexity Low_complexity 1 21 0 1621 159 61 3 chrX 3682937 3683268 -173290872 - AluJb SINE Alu 0 348 1 1546 169 83 4 chrX 3683954 3684405 -173289735 - AluJb SINE Alu 0 472 1 3015 129 11 23 chrX 3684489 3684962 -173289178 + L1PA16 LINE L1 5697 6163 -3 613 235 6 6 chrX 3685420 3685578 -173288562 + MLT2C2 LTR ERVL 6 163 -301 1935 170 37 10 chrX 3685578 3685934 -173288206 - MLT1A1 LTR MaLR 0 365 1 663 180 9 0 chrX 3685936 3686047 -173288093 + MLT2C2 LTR ERVL 161 272 -192 883 151 33 0 chrX 3686047 3686199 -173287941 - L1P4 LINE L1 -545 5621 5465 376 296 46 20 chrX 3686203 3686355 -173287785 + L1ME LINE L1 5611 5766 -355 2185 209 27 8 chrX 3686645 3687131 -173287009 + L1MC2 LINE L1 6119 7658 -95 2362 121 36 33 chrX 3687646 3688009 -173286131 - THE1B LTR MaLR 0 364 1 204 348 54 0 chrX 3688325 3688417 -173285723 + MIR3 SINE MIR 112 208 0 246 265 0 15 chrX 3688689 3688757 -173285383 + A-rich Low_complexity Low_complexity 3 69 0 1092 225 21 8 chrX 3688770 3689010 -173285130 + MLT1D LTR MaLR 261 503 -2 232 292 42 0 chrX 3689642 3689714 -173284426 + MER5A DNA MER1_type 1 75 -114 1312 197 4 8 chrX 3689716 3689970 -173284170 + AluJo SINE Alu 46 298 -14 256 159 48 0 chrX 3690194 3690257 -173283883 + L1MC4 LINE L1 6640 6705 -1337 1308 117 0 0 chrX 3690429 3690600 -173283540 + AluSq SINE Alu 21 191 -122 356 0 23 0 chrX 3690752 3690796 -173283344 + (TA)n Simple_repeat Simple_repeat 1 45 0 2805 93 11 16 chrX 3692036 3692413 -173281727 + THE1C LTR MaLR 1 375 0 257 283 0 33 chrX 3694350 3694442 -173279698 - L1MC4 LINE L1 -1339 6703 6615 459 92 0 0 chrX 3695021 3695086 -173279054 + (T)n Simple_repeat Simple_repeat 1 65 0 208 85 43 43 chrX 3695264 3695311 -173278829 + A-rich Low_complexity Low_complexity 5 51 0 317 335 188 0 chrX 3698983 3699153 -173274987 + MIR SINE MIR 1 202 -60 220 315 134 20 chrX 3699420 3699569 -173274571 + MIR SINE MIR 47 212 -50 228 250 0 0 chrX 3699789 3699849 -173274291 + (TA)n Simple_repeat Simple_repeat 2 61 0 274 355 44 40 chrX 3700330 3700581 -173273559 - L2 LINE L2 -467 2847 2596 233 128 21 0 chrX 3700623 3700670 -173273470 + GA-rich Low_complexity Low_complexity 4 51 0 971 180 120 0 chrX 3700894 3701077 -173273063 + AluJb SINE Alu 92 296 -16 217 398 8 16 chrX 3701958 3702086 -173272054 - MER5A DNA MER1_type 0 189 63 222 222 0 0 chrX 3703531 3703621 -173270519 + (TA)n Simple_repeat Simple_repeat 1 90 0 298 298 11 6 chrX 3704759 3704937 -173269203 + (TA)n Simple_repeat Simple_repeat 1 179 0 201 167 0 0 chrX 3704950 3705004 -173269136 + (TA)n Simple_repeat Simple_repeat 1 54 0 400 231 186 77 chrX 3705693 3705849 -173268291 + MER5A DNA MER1_type 11 183 -6 1208 151 0 0 chrX 3706264 3706449 -173267691 - AluJo SINE Alu -10 302 118 473 52 0 0 chrX 3706457 3706515 -173267625 + MADE1 DNA Mariner 22 79 -1 603 225 0 17 chrX 3706518 3706638 -173267502 - AluJo SINE Alu -184 118 1 1545 223 74 28 chrX 3706654 3707084 -173267056 - MLT1C LTR MaLR 0 467 18 242 118 0 0 chrX 3707431 3707465 -173266675 + MER53 DNA DNA 1 34 -155 259 259 35 0 chrX 3707476 3707561 -173266579 - MER53 DNA DNA -66 123 36 2118 134 0 3 chrX 3707561 3707866 -173266274 + AluSx SINE Alu 1 304 -8 308 292 42 73 chrX 3708330 3708418 -173265722 - L1MC/D LINE L1 -747 5399 5310 2111 115 0 0 chrX 3708418 3708706 -173265434 - L1PA13 LINE L1 -3 6160 5873 308 292 42 73 chrX 3708706 3709288 -173264852 - L1MC/D LINE L1 -836 5310 4775 1864 125 80 0 chrX 3709303 3709592 -173264548 - AluSx SINE Alu 0 312 1 669 166 0 0 chrX 3709831 3709976 -173264164 + GA-rich Low_complexity Low_complexity 1 145 0 180 77 0 0 chrX 3710747 3710773 -173263367 + (ATGGTG)n Simple_repeat Simple_repeat 3 28 0 22 56 0 0 chrX 3711309 3711345 -173262795 + AT_rich Low_complexity Low_complexity 1 36 0 1828 142 76 0 chrX 3712359 3712634 -173261506 - AluSg SINE Alu -14 296 1 991 142 108 48 chrX 3713623 3713764 -173260376 - L1MA8 LINE L1 -5 6286 6155 3125 88 12 2 chrX 3713764 3714194 -173259946 - MER57B LTR ERV1 0 434 1 991 142 108 48 chrX 3714194 3714320 -173259820 - L1MA8 LINE L1 -136 6155 6003 427 90 30 0 chrX 3714321 3714388 -173259752 + L1MA8 LINE L1 5908 5976 -336 656 238 83 0 chrX 3714761 3714942 -173259198 - MER58A DNA MER1_type 0 224 29 597 302 87 8 chrX 3715690 3715932 -173258208 + MIR SINE MIR 2 262 0 300 229 0 0 chrX 3719535 3719605 -173254535 - MER103 DNA DNA -87 79 10 358 359 48 7 chrX 3721787 3722060 -173252080 - L1MEd LINE L1 -3716 2413 2130 233 262 0 24 chrX 3722609 3722693 -173251447 - HAL1 LINE L1 -922 1585 1504 485 99 0 0 chrX 3722978 3723049 -173251091 - Alu SINE Alu -12 300 230 1135 172 0 0 chrX 3723049 3723229 -173250911 - AluJo SINE Alu -132 180 1 359 272 80 25 chrX 3723241 3723403 -173250737 - L1MEd LINE L1 -5017 1102 932 320 343 71 26 chrX 3723581 3724004 -173250136 - L1MEd LINE L1 -5300 819 378 303 337 94 30 chrX 3724159 3724361 -173249779 - L1MEd LINE L1 -5901 218 4 994 142 0 0 chrX 3725604 3725745 -173248395 - FRAM SINE Alu -24 152 12 1658 153 53 7 chrX 3725763 3726045 -173248095 - AluJo SINE Alu -17 295 1 1189 153 44 48 chrX 3726090 3726338 -173247802 + AluJo SINE Alu 41 287 -25 285 67 22 0 chrX 3727425 3727470 -173246670 + MADE1 DNA Mariner 1 46 -34 369 0 0 0 chrX 3728021 3728062 -173246078 + (CA)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chrX 3728061 3728088 -173246052 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 180 0 0 0 chrX 3728549 3728569 -173245571 + (TG)n Simple_repeat Simple_repeat 1 20 0 336 24 0 0 chrX 3728572 3728613 -173245527 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chrX 3729434 3729455 -173244685 + AT_rich Low_complexity Low_complexity 1 21 0 762 253 98 83 chrX 3729544 3729991 -173244149 - MER20B DNA MER1_type -140 643 190 273 309 45 54 chrX 3729992 3730215 -173243925 - MER20B DNA MER1_type -553 230 10 985 105 0 0 chrX 3730405 3730529 -173243611 - AluSq/x SINE Alu -188 124 1 25 0 0 0 chrX 3730769 3730794 -173243346 + AT_rich Low_complexity Low_complexity 1 25 0 7783 30 1 1 chrX 3730840 3731737 -173242403 - MER11D LTR ERVK 0 897 1 1394 259 188 37 chrX 3731973 3732889 -173241251 + Charlie1 DNA MER1_type 2 2353 -408 2485 142 34 5 chrX 3733194 3733610 -173240530 - MSTA LTR MaLR 0 428 1 2091 127 7 10 chrX 3733832 3734140 -173240000 - AluSx SINE Alu -5 307 1 3909 179 42 23 chrX 3734140 3735018 -173239122 - L1MC1 LINE L1 -6 6327 5433 1945 186 13 5 chrX 3735110 3735492 -173238648 + MLT1B LTR MaLR 6 390 0 2547 51 0 0 chrX 3735524 3735819 -173238321 - AluY SINE Alu -16 295 1 23 54 0 0 chrX 3735950 3735987 -173238153 + AT_rich Low_complexity Low_complexity 1 37 0 2059 67 82 0 chrX 3736275 3736557 -173237583 - AluY SINE Alu -6 305 1 392 291 44 25 chrX 3737973 3738131 -173236009 + LTR16A1 LTR ERVL 7 167 -290 267 246 0 0 chrX 3738192 3738257 -173235883 + LTR16A1 LTR ERVL 392 456 -1 370 308 70 42 chrX 3739241 3739455 -173234685 + MIR SINE MIR 9 228 -34 298 132 66 59 chrX 3739501 3739637 -173234503 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 273 29 0 0 chrX 3739651 3739685 -173234455 + (TC)n Simple_repeat Simple_repeat 1 34 0 386 225 36 0 chrX 3739688 3739799 -173234341 - L1MC4 LINE L1 -1314 6728 6614 347 0 0 23 chrX 3739842 3739886 -173234254 + (CA)n Simple_repeat Simple_repeat 2 44 0 249 93 56 0 chrX 3740925 3740979 -173233161 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 536 90 41 28 chrX 3741011 3741156 -173232984 + (TAGA)n Simple_repeat Simple_repeat 4 150 0 331 318 120 11 chrX 3741249 3741623 -173232517 - L1ME LINE L1 -388 5765 5351 265 267 11 0 chrX 3741712 3741802 -173232338 + (TA)n Simple_repeat Simple_repeat 2 92 0 343 290 76 37 chrX 3741945 3742352 -173231788 - L1ME LINE L1 -1031 5098 4676 29 90 0 0 chrX 3742360 3742438 -173231702 + AT_rich Low_complexity Low_complexity 1 78 0 390 279 73 46 chrX 3742656 3743248 -173230892 - L1ME LINE L1 -4866 1253 646 255 279 13 0 chrX 3743791 3743870 -173230270 - L1ME LINE L1 -6011 108 29 595 300 112 11 chrX 3744124 3744411 -173229729 + L2 LINE L2 2994 3309 -4 2093 135 3 3 chrX 3744574 3744871 -173229269 + AluSx SINE Alu 1 297 -15 240 35 0 0 chrX 3744871 3744900 -173229240 + (TA)n Simple_repeat Simple_repeat 1 29 0 289 270 6 6 chrX 3744921 3745099 -173229041 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 374 257 0 12 chrX 3745115 3745286 -173228854 + (TATATG)n Simple_repeat Simple_repeat 2 170 0 299 298 0 0 chrX 3745286 3745380 -173228760 + (TA)n Simple_repeat Simple_repeat 2 95 0 26 82 0 0 chrX 3745426 3745487 -173228653 + AT_rich Low_complexity Low_complexity 1 61 0 1294 149 57 50 chrX 3745573 3745835 -173228305 - AluJo SINE Alu -48 264 1 180 167 56 74 chrX 3745956 3746010 -173228130 + L3b LINE CR1 1250 1302 -281 22 0 0 0 chrX 3746462 3746484 -173227656 + AT_rich Low_complexity Low_complexity 1 22 0 1782 175 0 46 chrX 3746543 3746869 -173227271 - AluJb SINE Alu -1 311 1 730 213 23 50 chrX 3748552 3748756 -173225384 + L1MB2 LINE L1 5851 6050 -121 1758 178 3 33 chrX 3748756 3749055 -173225085 + L1PA15 LINE L1 5816 6104 -61 1808 133 67 25 chrX 3749055 3749415 -173224725 - THE1C LTR MaLR 0 375 1 1758 178 3 33 chrX 3749415 3749475 -173224665 + L1PA15 LINE L1 6104 6164 -1 730 213 23 50 chrX 3749475 3749491 -173224649 + L1MB2 LINE L1 6050 6065 -106 434 167 39 10 chrX 3749491 3749593 -173224547 + L1MB3 LINE L1 6078 6182 -1 1886 147 48 0 chrX 3749836 3750128 -173224012 - AluJb SINE Alu -2 310 5 265 263 0 18 chrX 3751167 3751224 -173222916 + MER58 DNA MER1_type 1 56 -2364 3047 103 33 2 chrX 3751268 3751724 -173222416 + L1PA13 LINE L1 5692 6161 -2 240 195 49 98 chrX 3751732 3751814 -173222326 + MER58 DNA MER1_type 2318 2395 -25 187 215 0 21 chrX 3753310 3753403 -173220737 + CT-rich Low_complexity Low_complexity 1 91 0 2313 111 33 18 chrX 3753432 3753828 -173220312 + L1MA2 LINE L1 5903 6304 0 279 62 24 7 chrX 3753854 3753904 -173220236 - MLT2C2 LTR ERVL -6 458 399 302 238 16 16 chrX 3753932 3754058 -173220082 + (CATA)n Simple_repeat Simple_repeat 1 126 0 314 258 0 43 chrX 3754069 3754162 -173219978 + L1MC4 LINE L1 6614 6702 -1340 230 191 0 32 chrX 3754165 3754228 -173219912 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 375 62 234 0 chrX 3754228 3754292 -173219848 + MADE1 DNA Mariner 1 79 -1 1382 196 64 57 chrX 3754327 3754623 -173219517 - MLT2C2 LTR ERVL -73 391 90 1485 171 23 48 chrX 3754623 3754933 -173219207 + AluJo SINE Alu 1 302 -10 1382 196 64 57 chrX 3754933 3755024 -173219116 - MLT2C2 LTR ERVL -374 90 1 809 120 0 0 chrX 3755059 3755184 -173218956 - L1PB3 LINE L1 -1 6153 6029 3739 107 20 118 chrX 3755284 3756123 -173218017 - L1PB3 LINE L1 -121 6033 5277 1016 234 75 51 chrX 3756752 3757210 -173216930 - MLT1C LTR MaLR -1 466 1 298 230 115 22 chrX 3757221 3757360 -173216780 - MLT1C LTR MaLR -124 343 192 1881 116 53 11 chrX 3757625 3757910 -173216230 - AluJo SINE Alu -15 297 1 438 255 99 36 chrX 3760788 3760961 -173213179 + MER20 DNA MER1_type 12 200 -19 4104 102 30 19 chrX 3760961 3761589 -173212551 - MER41B LTR ERV1 0 635 1 438 255 99 36 chrX 3761589 3761607 -173212533 + MER20 DNA MER1_type 200 215 -4 266 361 30 0 chrX 3762586 3762719 -173211421 + MIR3 SINE MIR 65 201 -7 203 217 29 0 chrX 3762890 3762959 -173211181 + (TA)n Simple_repeat Simple_repeat 1 71 0 1883 210 40 9 chrX 3762981 3763411 -173210729 - MLT2B2 LTR ERVL -39 515 3 1881 157 10 3 chrX 3764578 3764877 -173209263 - AluSx SINE Alu -11 301 1 2222 115 0 3 chrX 3765459 3765754 -173208386 - AluSx SINE Alu -18 294 1 512 131 0 0 chrX 3765980 3766064 -173208076 + L1MA2 LINE L1 6161 6244 -60 2165 134 0 0 chrX 3767841 3768183 -173205957 - AluSx SINE Alu 0 342 1 211 338 188 4 chrX 3768736 3769002 -173205138 + L2 LINE L2 2566 2880 -434 221 298 61 44 chrX 3769062 3769176 -173204964 + MER5A DNA MER1_type 74 189 0 267 54 0 0 chrX 3770971 3771008 -173203132 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 559 200 15 7 chrX 3771250 3771385 -173202755 - L1MB7 LINE L1 -218 5966 5831 230 216 82 0 chrX 3771385 3771482 -173202658 + (TA)n Simple_repeat Simple_repeat 2 106 0 3646 131 35 11 chrX 3771990 3772342 -173201798 + L1MC1 LINE L1 5693 6068 -265 373 88 176 0 chrX 3772342 3772410 -173201730 - MADE1 DNA Mariner 0 80 1 3646 131 35 11 chrX 3772410 3772681 -173201459 + L1MC1 LINE L1 6068 6331 -2 381 225 0 0 chrX 3772822 3772902 -173201238 + L1MC1 LINE L1 6240 6319 -14 1899 155 39 130 chrX 3772925 3773349 -173200791 + L1PA16 LINE L1 5651 6013 -153 2696 38 0 0 chrX 3773349 3773667 -173200473 + AluYb8 SINE Alu 1 318 0 1899 155 39 130 chrX 3773667 3773804 -173200336 + L1PA16 LINE L1 6013 6161 -5 22 0 0 0 chrX 3775427 3775449 -173198691 + AT_rich Low_complexity Low_complexity 1 22 0 183 330 80 57 chrX 3775941 3776117 -173198023 - L2 LINE L2 -268 3004 2825 1073 158 0 0 chrX 3776132 3776296 -173197844 + FRAM SINE Alu 1 163 -13 244 244 26 39 chrX 3776346 3776424 -173197716 + L2 LINE L2 2691 2767 -547 2353 125 100 5 chrX 3776428 3776819 -173197321 + MSTA LTR MaLR 1 428 0 194 232 18 0 chrX 3777109 3777165 -173196975 - L2 LINE L2 -1730 1584 1528 526 138 0 0 chrX 3777262 3777342 -173196798 - MADE1 DNA Mariner 0 80 1 360 273 114 11 chrX 3777613 3777789 -173196351 - L1MB7 LINE L1 -302 5819 5626 192 370 50 0 chrX 3778888 3778988 -173195152 + L2 LINE L2 3206 3310 -3 1955 105 42 27 chrX 3779680 3780013 -173194127 + THE1B LTR MaLR 1 338 -26 323 0 0 0 chrX 3780039 3780076 -173194064 + THE1B LTR MaLR 319 355 0 4990 107 8 16 chrX 3780766 3781025 -173193115 - L1PA13 LINE L1 -4 6159 5899 2410 60 13 10 chrX 3781025 3781326 -173192814 + AluY SINE Alu 1 302 -9 4990 107 8 16 chrX 3781326 3781861 -173192279 - L1PA13 LINE L1 -264 5899 5372 377 293 148 33 chrX 3781869 3782139 -173192001 + HAL1b LINE L1 172 472 -876 400 252 62 78 chrX 3782190 3782563 -173191577 + HAL1b LINE L1 581 947 -401 5387 133 4 13 chrX 3782789 3783698 -173190442 - L1PA13 LINE L1 0 6163 5263 1984 212 19 33 chrX 3784157 3784642 -173189498 - LTR31 LTR ERV1 -15 604 127 1707 110 0 0 chrX 3785869 3786097 -173188043 + AluSc SINE Alu 73 300 -9 3261 82 22 2 chrX 3786209 3786661 -173187479 + L1PA10 LINE L1 5695 6155 -13 199 359 0 0 chrX 3787484 3787548 -173186592 - L2 LINE L2 0 3272 3209 2250 81 3 0 chrX 3787753 3788038 -173186102 + AluY SINE Alu 1 286 -25 216 0 0 0 chrX 3788041 3788065 -173186075 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 890 118 0 7 chrX 3788182 3788326 -173185814 + (TTC)n Simple_repeat Simple_repeat 3 145 0 652 183 0 9 chrX 3788328 3788443 -173185697 - FLAM_C SINE Alu -29 114 1 362 214 15 20 chrX 3788463 3788660 -173185480 + CT-rich Low_complexity Low_complexity 1 195 0 376 329 76 8 chrX 3789467 3789652 -173184488 + MIR SINE MIR 15 212 -50 2170 119 23 52 chrX 3789724 3790110 -173184030 - THE1C LTR MaLR 0 375 1 282 301 29 10 chrX 3790807 3790910 -173183230 + MIR3 SINE MIR 87 191 -17 1759 234 59 25 chrX 3791292 3791780 -173182360 + MLT1D LTR MaLR 1 505 0 2217 59 42 3 chrX 3792859 3793148 -173180992 + AluY SINE Alu 1 300 -11 24 32 0 0 chrX 3793721 3793752 -173180388 + AT_rich Low_complexity Low_complexity 1 31 0 198 263 147 21 chrX 3794539 3794635 -173179505 + MIR SINE MIR 63 171 -37 386 176 0 0 chrX 3794671 3794745 -173179395 - MADE1 DNA Mariner 0 80 7 372 222 94 26 chrX 3794916 3795033 -173179107 + L2 LINE L2 3189 3313 0 385 242 91 0 chrX 3795036 3795135 -173179005 + MER3 DNA MER1_type 1 108 -101 1683 112 28 17 chrX 3795148 3795435 -173178705 - THE1C LTR MaLR 0 375 86 278 115 19 0 chrX 3795551 3795603 -173178537 + (TA)n Simple_repeat Simple_repeat 1 53 0 534 213 0 55 chrX 3796254 3796381 -173177759 - FLAM_A SINE Alu -9 133 14 1093 235 4 16 chrX 3796917 3797168 -173176972 - AluJo SINE Alu -24 288 41 225 278 81 40 chrX 3797182 3797380 -173176760 - L1M4 LINE L1 -1200 4946 4741 2068 155 0 0 chrX 3797726 3798035 -173176105 + AluJo SINE Alu 1 309 -3 181 191 0 48 chrX 3798141 3798204 -173175936 + GA-rich Low_complexity Low_complexity 2 61 0 257 73 0 24 chrX 3798808 3798849 -173175291 + (TAA)n Simple_repeat Simple_repeat 2 41 0 978 206 42 35 chrX 3798985 3799173 -173174967 + MER33 DNA MER1_type 5 197 -2388 2502 148 21 23 chrX 3799173 3799606 -173174534 - Tigger2a DNA MER2_type -1 433 2 978 206 42 35 chrX 3799606 3799727 -173174413 + MER33 DNA MER1_type 197 316 -8 987 411 0 48 chrX 3799763 3800079 -173174061 + AluJo SINE Alu 1 301 -1 1578 222 128 18 chrX 3800270 3800600 -173173540 + MLT1D LTR MaLR 1 396 -109 3632 128 22 21 chrX 3800600 3800971 -173173169 + L1PA16 LINE L1 5535 5909 -257 2104 114 19 56 chrX 3800971 3801349 -173172791 + THE1B LTR MaLR 1 364 0 3632 128 22 21 chrX 3801349 3801608 -173172532 + L1PA16 LINE L1 5909 6166 0 1578 222 128 18 chrX 3801608 3801732 -173172408 + MLT1D LTR MaLR 396 505 0 505 313 7 0 chrX 3801826 3801970 -173172170 - MER63A DNA MER1_type -9 201 57 510 303 0 13 chrX 3802896 3803048 -173171092 + MER63 DNA MER1_type 10 785 -277 4498 137 31 22 chrX 3803149 3804010 -173170130 + L1PB4 LINE L1 5276 6144 -12 26 0 0 0 chrX 3804137 3804163 -173169977 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chrX 3805041 3805067 -173169073 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 637 249 15 34 chrX 3806349 3806554 -173167586 - MER20 DNA MER1_type -3 216 16 1868 135 56 31 chrX 3806820 3807175 -173166965 + THE1B LTR MaLR 1 364 0 2143 118 0 14 chrX 3807468 3807764 -173166376 + AluSx SINE Alu 1 292 -20 229 163 82 0 chrX 3808319 3808368 -173165772 - LTR16A1 LTR ERVL 0 457 405 441 259 0 17 chrX 3808383 3808499 -173165641 - MIR SINE MIR 0 262 149 1653 197 15 6 chrX 3808500 3808840 -173165300 - L1PB4 LINE L1 -6 6150 5808 798 73 0 0 chrX 3808844 3808954 -173165186 + (TTTC)n Simple_repeat Simple_repeat 3 112 0 350 205 3 0 chrX 3809684 3809759 -173164381 - L1M3 LINE L1 -355 5811 5735 21 0 0 0 chrX 3810147 3810168 -173163972 + AT_rich Low_complexity Low_complexity 1 21 0 335 236 28 0 chrX 3810311 3810383 -173163757 + MER58A DNA MER1_type 3 76 -31 195 307 68 34 chrX 3810549 3810637 -173163503 - MIR SINE MIR -63 145 55 1596 200 13 27 chrX 3811433 3811733 -173162407 + AluJo SINE Alu 1 296 -16 1456 183 173 90 chrX 3812509 3813287 -173160853 - LTR1B LTR ERV1 0 1020 1 1686 191 10 0 chrX 3814200 3814488 -173159652 + AluJb SINE Alu 1 291 -21 287 299 114 30 chrX 3814937 3815104 -173159036 - MIR SINE MIR -30 232 52 439 324 0 7 chrX 3818974 3819119 -173155021 + (CATATA)n Simple_repeat Simple_repeat 4 147 0 615 256 0 0 chrX 3819129 3819305 -173154835 + (TA)n Simple_repeat Simple_repeat 2 177 0 661 218 111 70 chrX 3819387 3819818 -173154322 + L1MC4 LINE L1 7447 7895 -147 290 200 47 0 chrX 3819827 3819912 -173154228 + (TA)n Simple_repeat Simple_repeat 2 90 0 391 197 24 39 chrX 3819941 3820068 -173154072 + L1MC4 LINE L1 7918 8042 0 207 350 14 70 chrX 3820361 3820504 -173153636 + MIR3 SINE MIR 2 136 -72 1183 139 8 48 chrX 3820701 3820953 -173153187 - L1MA5A LINE L1 -2 6295 6054 3027 23 0 0 chrX 3821444 3821795 -173152345 - L1PA4 LINE L1 -3 6152 5802 1525 217 15 35 chrX 3822300 3822756 -173151384 + L1MB8 LINE L1 5727 6173 -5 215 271 0 0 chrX 3823510 3823558 -173150582 + (TA)n Simple_repeat Simple_repeat 2 49 0 467 110 0 0 chrX 3823905 3823978 -173150162 - L1PA16 LINE L1 -3 6163 6091 1055 255 143 37 chrX 3824102 3824611 -173149529 + MLT1E LTR MaLR 19 581 -12 1758 161 28 24 chrX 3824613 3824904 -173149236 + AluJo SINE Alu 1 292 -20 753 157 8 15 chrX 3825357 3825491 -173148649 + AluJ SINE Alu 1 133 -179 736 188 8 0 chrX 3825886 3826014 -173148126 + FLAM_A SINE Alu 1 129 -4 189 350 51 35 chrX 3826127 3826312 -173147828 - MIR SINE MIR -17 245 57 2198 128 0 0 chrX 3826823 3827119 -173147021 + AluSx SINE Alu 1 296 -16 1741 160 23 23 chrX 3827220 3827564 -173146576 - MLT1B LTR MaLR -46 344 1 306 123 0 0 chrX 3828005 3828062 -173146078 + (GA)n Simple_repeat Simple_repeat 2 58 0 387 217 66 0 chrX 3828707 3828813 -173145327 + L1MB8 LINE L1 6060 6172 -6 231 180 0 0 chrX 3828816 3828826 -173145314 + (TA)n Simple_repeat Simple_repeat 1 10 -40 3001 58 3 0 chrX 3828826 3829207 -173144933 - L1PA7 LINE L1 -7 6147 5766 231 180 0 0 chrX 3829207 3829246 -173144894 + (TA)n Simple_repeat Simple_repeat 9 50 0 402 327 105 34 chrX 3829513 3829895 -173144245 - L1ME LINE L1 -446 5675 5267 27 29 0 0 chrX 3830469 3830503 -173143637 + AT_rich Low_complexity Low_complexity 1 34 0 250 83 0 0 chrX 3830919 3830955 -173143185 - MADE1 DNA Mariner 0 80 45 325 292 42 31 chrX 3831086 3831278 -173142862 + L1ME LINE L1 5064 5257 -889 349 336 16 8 chrX 3831285 3831529 -173142611 + L1ME LINE L1 5263 5508 -656 703 239 24 24 chrX 3831536 3831745 -173142395 + MER3 DNA MER1_type 1 209 0 1025 139 63 0 chrX 3831869 3832027 -173142113 + AluJ SINE Alu 141 308 -4 922 98 50 7 chrX 3832167 3832433 -173141707 + GA-rich Low_complexity Low_complexity 1 277 0 249 98 0 0 chrX 3832702 3832743 -173141397 + (CA)n Simple_repeat Simple_repeat 1 41 0 1209 196 158 117 chrX 3832760 3833573 -173140567 - LTR1B LTR ERV1 0 1020 1 531 194 78 0 chrX 3834428 3834531 -173139609 - AluJo SINE Alu -21 291 181 719 206 28 39 chrX 3834631 3834811 -173139329 - AluJo SINE Alu -132 180 3 574 182 0 0 chrX 3834844 3834954 -173139186 - L1MB1 LINE L1 -40 6128 6019 963 254 103 67 chrX 3835391 3835898 -173138242 - MLT1E2 LTR MaLR -22 604 80 421 144 39 19 chrX 3836288 3836392 -173137748 + MER4C LTR ERV1 1 106 -359 547 192 45 81 chrX 3836478 3836747 -173137393 + LTR59 LTR ERV1 136 377 -220 * 619 234 108 73 chrX 3836746 3837063 -173137077 + MER4C LTR ERV1 276 465 0 213 276 17 0 chrX 3837335 3837393 -173136747 + L2 LINE L2 3250 3308 -5 350 258 0 0 chrX 3838154 3838251 -173135889 - MLT1E2 LTR MaLR 0 626 530 835 176 0 121 chrX 3838251 3838450 -173135690 + AluJo SINE Alu 86 260 -52 1758 257 15 39 chrX 3838504 3838960 -173135180 - MLT1E2 LTR MaLR -98 528 85 1875 152 35 70 chrX 3838960 3839362 -173134778 - MLT1B LTR MaLR 0 390 3 1758 257 15 39 chrX 3839362 3839446 -173134694 - MLT1E2 LTR MaLR -541 85 1 2184 119 20 0 chrX 3839656 3839951 -173134189 - AluSx SINE Alu -9 303 3 333 0 0 0 chrX 3840001 3840038 -173134102 + (A)n Simple_repeat Simple_repeat 1 37 0 600 271 35 15 chrX 3840131 3840334 -173133806 - MER3 DNA MER1_type 0 209 3 870 238 5 0 chrX 3841927 3842116 -173132024 - MER58A DNA MER1_type 0 224 35 2751 194 91 56 chrX 3842141 3842957 -173131183 - MER21B LTR ERV1 -19 844 1 225 29 0 59 chrX 3843810 3843844 -173130296 - L1P4 LINE L1 -439 5724 5693 1091 218 153 0 chrX 3844175 3844436 -173129704 - AluJo SINE Alu -1 311 11 1033 186 134 0 chrX 3844472 3844666 -173129474 - AluJo SINE Alu -92 220 1 184 328 0 30 chrX 3845080 3845147 -173128993 - MIR SINE MIR -73 189 125 1450 184 26 45 chrX 3845201 3845511 -173128629 + AluJo SINE Alu 1 304 -8 35 0 0 0 chrX 3845569 3845604 -173128536 + AT_rich Low_complexity Low_complexity 1 35 0 406 287 109 17 chrX 3845665 3845839 -173128301 + MIR SINE MIR 59 248 -14 396 288 30 0 chrX 3845853 3845985 -173128155 - L2 LINE L2 -1018 2296 2161 1945 163 40 36 chrX 3846019 3846568 -173127572 - MLT2A2 LTR ERVL 0 554 1 1184 249 31 62 chrX 3846716 3847015 -173127125 - MLT1C LTR MaLR 0 467 160 1932 134 0 23 chrX 3847015 3847146 -173126994 + AluSx SINE Alu 1 133 -179 450 94 0 0 chrX 3847146 3847210 -173126930 + (TA)n Simple_repeat Simple_repeat 2 65 0 2369 87 0 3 chrX 3847218 3847516 -173126624 + AluSx SINE Alu 5 301 -11 1932 134 0 23 chrX 3847516 3847682 -173126458 + AluSx SINE Alu 140 300 -12 1184 249 31 62 chrX 3847682 3847864 -173126276 - MLT1C LTR MaLR -307 160 1 2470 62 0 0 chrX 3849577 3849869 -173124271 + AluY SINE Alu 1 292 -19 883 218 50 50 chrX 3849967 3850035 -173124105 + MER58B DNA MER1_type 79 146 -2274 3863 145 35 22 chrX 3850035 3850752 -173123388 + L1MC1 LINE L1 5606 6331 -2 883 218 50 50 chrX 3850752 3850945 -173123195 + MER58B DNA MER1_type 145 340 -1 874 264 123 36 chrX 3851417 3851529 -173122611 + MLT2F LTR ERVL 5 106 -557 4301 153 39 20 chrX 3851529 3852294 -173121846 + LTR39 LTR ERV1 4 783 0 874 264 123 36 chrX 3852294 3852628 -173121512 + MLT2F LTR ERVL 106 490 -173 3126 99 4 25 chrX 3852647 3853122 -173121018 + MER4C LTR ERV1 1 465 0 1595 213 71 69 chrX 3853657 3854292 -173119848 - MER92B LTR ERV1 0 636 1 261 0 0 0 chrX 3854370 3854399 -173119741 + (CA)n Simple_repeat Simple_repeat 2 30 0 271 263 38 12 chrX 3854485 3854565 -173119575 - MIR SINE MIR -93 169 88 361 130 30 20 chrX 3856836 3856936 -173117204 + (TA)n Simple_repeat Simple_repeat 1 101 0 358 306 88 26 chrX 3857883 3858076 -173116064 - MIR SINE MIR -43 219 15 1968 159 7 7 chrX 3858377 3858685 -173115455 - AluJo SINE Alu -4 308 1 34 42 0 0 chrX 3858770 3858818 -173115322 + AT_rich Low_complexity Low_complexity 1 48 0 619 208 15 0 chrX 3859072 3859202 -173114938 + MER7A DNA MER2_type 1 130 -216 1401 168 40 0 chrX 3859239 3859513 -173114627 + MER7A DNA MER2_type 63 345 -1 3101 147 29 11 chrX 3859727 3860285 -173113855 + LTR24B LTR ERV1 4 571 -5 340 132 26 66 chrX 3860282 3860358 -173113782 + MLT1D LTR MaLR 13 85 -420 * 1483 204 32 24 chrX 3860637 3861014 -173113126 + MLT1D LTR MaLR 118 497 -8 255 318 24 12 chrX 3861375 3861460 -173112680 + MER5A DNA MER1_type 18 103 -86 440 205 0 41 chrX 3861532 3861673 -173112467 - MER5B DNA MER1_type -1 177 2 231 365 21 21 chrX 3862818 3862963 -173111177 + L2 LINE L2 3169 3313 0 756 191 0 0 chrX 3863249 3863427 -173110713 + (ATG)n Simple_repeat Simple_repeat 2 179 0 664 189 0 38 chrX 3863395 3863580 -173110560 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 * 943 180 2 6 chrX 3863576 3864125 -173110015 + (ATG)n Simple_repeat Simple_repeat 1 546 0 809 157 117 5 chrX 3864421 3864618 -173109522 + L1MA8 LINE L1 5822 6040 -251 4397 138 26 21 chrX 3864812 3865616 -173108524 - L1MA4 LINE L1 -1 6299 5492 262 259 0 12 chrX 3865885 3865966 -173108174 - LTR16B LTR ERVL -10 454 375 661 209 5 32 chrX 3866004 3866033 -173108107 - L1MB8 LINE L1 -247 5931 5903 9066 39 2 2 chrX 3866033 3867104 -173107036 + MER11C LTR ERVK 1 1071 0 661 209 5 32 chrX 3867104 3867261 -173106879 - L1MB8 LINE L1 -275 5903 5750 811 310 37 13 chrX 3867719 3868093 -173106047 + L1ME LINE L1 497 879 -5651 379 298 44 25 chrX 3868291 3868449 -173105691 - LTR16A1 LTR ERVL -290 167 7 403 123 0 41 chrX 3868680 3868753 -173105387 - MER41D LTR ERV1 0 557 488 7719 23 0 0 chrX 3868765 3870036 -173104104 - L1PA3 LINE L1 -3 6152 4882 1399 110 5 0 chrX 3870090 3870299 -173103841 - MER41D LTR ERV1 -347 210 1 411 21 0 0 chrX 3870319 3870367 -173103773 + (CA)n Simple_repeat Simple_repeat 1 48 0 710 267 72 52 chrX 3870397 3871262 -173102878 + L1ME LINE L1 1047 1955 -4585 618 100 45 0 chrX 3871564 3871674 -173102466 + L1PA13 LINE L1 6049 6163 0 267 286 112 0 chrX 3871724 3871920 -173102220 + L1ME LINE L1 2525 2742 -3798 331 222 11 22 chrX 3871922 3872012 -173102128 + L1ME2 LINE L1 5656 5744 -420 381 158 105 0 chrX 3872013 3872089 -173102051 + L1M3 LINE L1 5703 5786 -548 * 399 246 45 102 chrX 3872081 3872325 -173101815 + L1ME2 LINE L1 5905 6134 -30 613 90 0 20 chrX 3872349 3872449 -173101691 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 2143 137 0 0 chrX 3872449 3872762 -173101378 - AluSq SINE Alu 0 313 1 212 233 0 0 chrX 3872902 3872945 -173101195 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 332 163 0 25 chrX 3873457 3873537 -173100603 + L1MA4 LINE L1 6222 6299 -1 24 0 0 0 chrX 3873539 3873563 -173100577 + AT_rich Low_complexity Low_complexity 1 24 0 2004 140 0 23 chrX 3874297 3874604 -173099536 - AluSx SINE Alu -12 300 1 1376 147 23 34 chrX 3875333 3875599 -173098541 - LTR8 LTR ERV1 0 691 429 1500 141 7 46 chrX 3875620 3875904 -173098236 - LTR8 LTR ERV1 -418 273 1 270 0 0 0 chrX 3876110 3876140 -173098000 + (CA)n Simple_repeat Simple_repeat 2 31 0 541 259 30 51 chrX 3876371 3876568 -173097572 - MIR SINE MIR 0 262 70 518 198 16 16 chrX 3879249 3879370 -173094770 - MLT1E LTR MaLR -2 591 471 534 240 19 28 chrX 3879996 3880159 -173093981 + MLT1E LTR MaLR 12 168 -374 1902 154 7 0 chrX 3880527 3880820 -173093320 + AluJb SINE Alu 1 295 -17 640 149 9 0 chrX 3880899 3881013 -173093127 - L1MB8 LINE L1 -1 6177 6063 381 294 98 33 chrX 3881194 3881378 -173092762 - MIR SINE MIR -18 244 49 1968 133 10 10 chrX 3881401 3881702 -173092438 - AluSx SINE Alu -2 310 10 761 277 81 14 chrX 3881799 3882095 -173092045 - MLT1F1 LTR MaLR 0 567 252 1719 187 18 22 chrX 3882349 3882736 -173091404 - L1MA4 LINE L1 -23 6133 5767 2183 133 28 17 chrX 3882773 3883133 -173091007 - THE1B LTR MaLR 0 364 1 1993 99 60 7 chrX 3883879 3884162 -173089978 + AluSq SINE Alu 1 298 -15 1217 318 92 46 chrX 3884457 3885224 -173088916 + L2 LINE L2 2358 3168 -145 2576 98 19 3 chrX 3885224 3885593 -173088547 + THE1C LTR MaLR 1 375 0 1217 318 92 46 chrX 3885593 3885741 -173088399 + L2 LINE L2 3168 3308 -5 2730 148 140 27 chrX 3885746 3886374 -173087766 + LTR34 LTR ERV1 1 699 0 242 211 19 0 chrX 3886471 3886523 -173087617 - AluJ/FLAM SINE Alu -233 69 17 759 247 6 0 chrX 3887147 3887329 -173086811 + MER58A DNA MER1_type 41 223 -1 24 67 0 0 chrX 3887465 3887510 -173086630 + AT_rich Low_complexity Low_complexity 1 45 0 2300 106 8 65 chrX 3890266 3890652 -173083488 - THE1B LTR MaLR 0 364 1 879 188 28 17 chrX 3890780 3890961 -173083179 + L1PA16 LINE L1 5679 5861 -305 1655 183 28 13 chrX 3890961 3891345 -173082795 + L1PA16 LINE L1 5763 6157 -9 188 108 0 27 chrX 3892085 3892122 -173082018 + (TTTTC)n Simple_repeat Simple_repeat 4 39 0 366 121 0 0 chrX 3892144 3892210 -173081930 + (GGAA)n Simple_repeat Simple_repeat 2 67 0 2014 150 0 0 chrX 3892254 3892548 -173081592 - AluJb SINE Alu -18 294 1 361 335 64 62 chrX 3892840 3893216 -173080924 + L2 LINE L2 2716 3100 -213 2332 107 0 0 chrX 3893216 3893525 -173080615 - AluSc SINE Alu 0 309 1 361 335 64 62 chrX 3893525 3893731 -173080409 + L2 LINE L2 3100 3304 -9 3820 133 20 3 chrX 3893916 3894555 -173079585 - MER39B LTR ERV1 0 653 4 837 213 15 15 chrX 3895572 3895769 -173078371 - MER58A DNA MER1_type -1 223 27 360 0 0 0 chrX 3895880 3895920 -173078220 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2269 119 0 3 chrX 3896066 3896378 -173077762 - AluSx SINE Alu -1 311 1 1929 177 3 0 chrX 3896594 3896905 -173077235 + AluJo SINE Alu 1 312 0 569 190 25 8 chrX 3896984 3897146 -173076994 - AluSg/x SINE Alu 0 322 159 23 0 0 0 chrX 3899626 3899649 -173074491 + AT_rich Low_complexity Low_complexity 1 23 0 531 140 47 5 chrX 3899686 3899795 -173074345 - L1MA9 LINE L1 -11 6280 6169 499 175 19 62 chrX 3899958 3900118 -173074022 + L1P LINE L1 3840 3992 -2154 607 288 58 10 chrX 3900299 3900504 -173073636 - MER58A DNA MER1_type -9 215 1 328 267 65 65 chrX 3900517 3900764 -173073376 + L1M4 LINE L1 2789 3035 -3111 1320 223 3 3 chrX 3900811 3901098 -173073042 + AluY SINE Alu 1 287 -24 1515 220 73 45 chrX 4001374 4001837 -172972303 - MER39 LTR ERV1 0 707 232 1339 182 171 62 chrX 4002409 4002864 -172971276 - MLT1D LTR MaLR 0 505 1 240 303 41 78 chrX 4003019 4003263 -172970877 + L2 LINE L2 2268 2502 -812 1641 180 14 17 chrX 4003288 4003577 -172970563 + AluJo SINE Alu 1 288 -24 25 0 0 0 chrX 4003580 4003605 -172970535 + AT_rich Low_complexity Low_complexity 1 25 0 274 404 18 18 chrX 4003835 4004060 -172970080 + L2 LINE L2 2560 2784 -530 871 144 0 0 chrX 4004099 4004217 -172969923 + FLAM_C SINE Alu 1 118 -25 2034 133 10 0 chrX 4004400 4004700 -172969440 + AluSx SINE Alu 1 303 -9 2135 161 31 3 chrX 4004929 4005284 -172968856 + MER47A DNA MER2_type 1 365 -1 1700 171 22 0 chrX 4005551 4005826 -172968314 - AluJb SINE Alu -31 281 1 238 205 24 0 chrX 4005947 4006030 -172968110 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 519 128 35 37 chrX 4006129 4006399 -172967741 + (TAGA)n Simple_repeat Simple_repeat 1 269 0 246 194 83 0 chrX 4006559 4006631 -172967509 + L1MC4 LINE L1 6618 6695 -1347 180 0 0 0 chrX 4006631 4006651 -172967489 + (TG)n Simple_repeat Simple_repeat 2 21 0 264 230 45 126 chrX 4006724 4006946 -172967194 - L1ME4a LINE L1 -157 5964 5761 1626 201 3 7 chrX 4008274 4008568 -172965572 - AluJo SINE Alu -19 293 1 846 178 0 0 chrX 4008568 4008703 -172965437 - AluJo SINE Alu -177 135 1 668 256 22 44 chrX 4009162 4009422 -172964718 + MLT1E LTR MaLR 13 233 -391 1903 122 32 10 chrX 4009431 4009801 -172964339 - L1PB4 LINE L1 -598 5558 5184 3984 125 7 12 chrX 4009801 4010393 -172963747 + L1PB4 LINE L1 5565 6154 -2 814 269 31 59 chrX 4010425 4010711 -172963429 + MLT1E LTR MaLR 206 483 -110 2068 130 93 17 chrX 4010716 4011069 -172963071 - MLT1B LTR MaLR -7 383 4 647 177 9 18 chrX 4011073 4011186 -172962954 + MLT1E LTR MaLR 479 590 -3 1374 157 8 0 chrX 4011501 4011743 -172962397 + L1M2 LINE L1 5550 5793 -519 322 279 47 0 chrX 4011778 4011864 -172962276 + L1MC4 LINE L1 6614 6703 -1339 1145 141 0 18 chrX 4011973 4012143 -172961997 - AluJo SINE Alu -145 167 1 190 369 117 0 chrX 4012698 4012809 -172961331 - MIR SINE MIR -69 139 16 1963 126 0 20 chrX 4013991 4014192 -172959948 - AluSq SINE Alu 0 313 295 363 23 0 0 chrX 4014192 4014236 -172959904 + (TTATG)n Simple_repeat Simple_repeat 2 45 0 1963 126 0 20 chrX 4014236 4014526 -172959614 - AluSq SINE Alu -18 295 1 290 331 153 0 chrX 4014614 4014738 -172959402 + MIR SINE MIR 11 153 -109 209 229 0 0 chrX 4014755 4014803 -172959337 - MIR SINE MIR -109 153 106 274 327 9 19 chrX 4014872 4014979 -172959161 + MIR SINE MIR 100 205 -57 1760 75 9 0 chrX 4017269 4017497 -172956643 - AluSp SINE Alu -8 305 76 1762 176 7 3 chrX 4018043 4018333 -172955807 + AluJo SINE Alu 1 291 -21 276 198 85 38 chrX 4018374 4018480 -172955660 - L1ME LINE L1 -298 5823 5713 2233 146 22 3 chrX 4018706 4019063 -172955077 + THE1B LTR MaLR 1 364 0 2144 235 5 43 chrX 4019282 4019840 -172954300 - MLT1F LTR MaLR 0 542 6 21 36 0 0 chrX 4020059 4020087 -172954053 + AT_rich Low_complexity Low_complexity 1 28 0 252 149 0 0 chrX 4020390 4020437 -172953703 + (TC)n Simple_repeat Simple_repeat 2 48 0 1508 243 40 50 chrX 4021342 4021861 -172952279 + LTR40a LTR ERVL 6 519 0 579 164 10 0 chrX 4021898 4022002 -172952138 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 3279 143 98 22 chrX 4021995 4022269 -172951871 + Tigger3(Golem) DNA MER2_type 2283 2535 -494 2057 120 40 7 chrX 4022269 4022570 -172951570 + AluSx SINE Alu 1 311 -1 3279 143 98 22 chrX 4022570 4022989 -172951151 + Tigger3(Golem) DNA MER2_type 2535 3029 0 611 163 42 226 chrX 4023624 4023874 -172950266 + MLT1A1 LTR MaLR 1 159 -215 518 100 0 25 chrX 4023874 4023954 -172950186 + MADE1 DNA Mariner 3 80 0 611 163 42 226 chrX 4023954 4024084 -172950056 + MLT1A1 LTR MaLR 159 311 -63 555 308 28 34 chrX 4025039 4025155 -172948985 - L1ME3A LINE L1 -33 6137 6022 2377 141 3 3 chrX 4025155 4025530 -172948610 - THE1C LTR MaLR 0 375 1 555 308 28 34 chrX 4025530 4025767 -172948373 - L1ME3A LINE L1 -148 6022 5786 1084 275 65 14 chrX 4026418 4026851 -172947289 - L1ME3A LINE L1 -8 6162 5708 244 175 70 0 chrX 4026853 4026910 -172947230 - MSTA LTR MaLR 0 428 368 23 0 0 0 chrX 4026934 4026957 -172947183 + AT_rich Low_complexity Low_complexity 1 23 0 2271 130 10 55 chrX 4026961 4027361 -172946779 - MSTA LTR MaLR -46 382 1 688 267 6 68 chrX 4027362 4027714 -172946426 - L1ME3A LINE L1 -461 5709 5380 367 98 0 0 chrX 4027715 4027766 -172946374 - MSTB LTR MaLR 0 426 376 1339 167 18 13 chrX 4027768 4027995 -172946145 - AluJo SINE Alu -84 228 1 334 301 27 48 chrX 4030520 4030666 -172943474 - MIR SINE MIR 0 262 120 2212 130 16 19 chrX 4030795 4031171 -172942969 + THE1C LTR MaLR 1 375 0 245 143 0 0 chrX 4031269 4031304 -172942836 - MER5A DNA MER1_type 0 189 155 1172 244 24 3 chrX 4031313 4031604 -172942536 - MER58B DNA MER1_type -2 339 43 2805 128 15 2 chrX 4031610 4032071 -172942069 - MER41B LTR ERV1 0 635 169 348 228 26 26 chrX 4032241 4032355 -172941785 + Charlie8 DNA MER1_type 77 190 -2227 1859 132 140 13 chrX 4032422 4032800 -172941340 - MSTA LTR MaLR 0 428 3 591 225 42 37 chrX 4032957 4033148 -172940992 + Tigger2 DNA MER2_type 1 192 -2526 696 187 22 14 chrX 4033376 4033515 -172940625 + Tigger2 DNA MER2_type 2579 2718 0 721 170 24 48 chrX 4033561 4033726 -172940414 - MLT1A1 LTR MaLR 0 365 217 4445 139 111 98 chrX 4033726 4035250 -172938890 - pTR5 LTR ERV1 -8 2430 714 444 209 122 0 chrX 4035261 4035376 -172938764 - MLT1A1 LTR MaLR -218 147 19 301 329 44 29 chrX 4035387 4035524 -172938616 - MIR SINE MIR -104 158 20 226 210 43 29 chrX 4036149 4036287 -172937853 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 284 206 0 29 chrX 4036371 4036507 -172937633 + (TA)n Simple_repeat Simple_repeat 1 132 0 1780 168 46 0 chrX 4036510 4036838 -172937302 - MER7A DNA MER2_type -5 341 1 2359 121 84 74 chrX 4036917 4037508 -172936632 - MER4B LTR ERV1 0 779 26 256 337 22 0 chrX 4037590 4037682 -172936458 - MIR SINE MIR -104 158 65 348 178 28 0 chrX 4037742 4037849 -172936291 + (TA)n Simple_repeat Simple_repeat 2 111 0 231 146 0 0 chrX 4038413 4038454 -172935686 + (T)n Simple_repeat Simple_repeat 1 41 0 1520 180 6 40 chrX 4039774 4040101 -172934039 + LTR8 LTR ERV1 1 316 -375 1163 104 0 0 chrX 4040134 4040297 -172933843 + LTR8 LTR ERV1 526 688 -3 1206 223 177 9 chrX 4040702 4041268 -172932872 + L1ME2 LINE L1 5198 5851 -313 780 234 9 22 chrX 4041294 4041520 -172932620 + L1ME2 LINE L1 5923 6145 -19 771 124 99 0 chrX 4041808 4041949 -172932191 + FLAM_C SINE Alu 1 153 0 2472 46 23 0 chrX 4042943 4043247 -172930893 - AluY SINE Alu 0 311 1 527 83 83 12 chrX 4043308 4043476 -172930664 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 493 73 85 24 chrX 4043489 4043654 -172930486 + (TAGA)n Simple_repeat Simple_repeat 1 175 0 438 259 83 105 chrX 4043654 4044206 -172929934 + MER34 LTR ERV1 1 540 -2 587 215 0 6 chrX 4044217 4044380 -172929760 + (TAGA)n Simple_repeat Simple_repeat 1 162 0 2021 127 34 3 chrX 4044875 4045167 -172928973 + AluJo SINE Alu 6 306 -6 218 319 21 106 chrX 4045171 4045312 -172928828 + MIR3 SINE MIR 3 131 -77 2224 117 3 0 chrX 4045806 4046104 -172928036 + AluSx SINE Alu 1 299 -13 24 0 0 0 chrX 4047402 4047426 -172926714 + AT_rich Low_complexity Low_complexity 1 24 0 1289 202 8 4 chrX 4047440 4047678 -172926462 - AluJb SINE Alu -73 239 1 359 167 97 0 chrX 4047785 4047857 -172926283 - MER5B DNA MER1_type 0 178 100 273 143 0 18 chrX 4048268 4048324 -172925816 - MLT2B3 LTR ERVL 0 554 500 201 39 0 0 chrX 4048325 4048351 -172925789 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 77 0 0 chrX 4048365 4048417 -172925723 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2391 83 0 0 chrX 4048419 4048720 -172925420 + AluY SINE Alu 4 304 -7 364 128 11 69 chrX 4048774 4048962 -172925178 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 569 89 13 68 chrX 4049007 4049389 -172924751 + (TAGA)n Simple_repeat Simple_repeat 1 360 0 2265 228 23 2 chrX 4049389 4049918 -172924222 - MLT2B3 LTR ERVL -19 506 1 1681 163 8 73 chrX 4050172 4050571 -172923569 + L1MB3 LINE L1 5767 6139 -44 846 180 0 0 chrX 4050578 4050717 -172923423 + FRAM SINE Alu 13 151 -25 308 21 0 21 chrX 4050726 4050773 -172923367 + L1MB3 LINE L1 6129 6174 -9 427 226 32 106 chrX 4051027 4051410 -172922730 + MER34 LTR ERV1 216 542 0 3492 109 25 15 chrX 4051518 4052040 -172922100 - MER1A DNA MER1_type 0 527 1 354 370 68 48 chrX 4053345 4053726 -172920414 + L2 LINE L2 2681 3063 -209 2138 133 3 0 chrX 4054081 4054389 -172919751 + AluSx SINE Alu 1 309 -3 3537 143 11 24 chrX 4055289 4055951 -172918189 - MER39B LTR ERV1 0 653 1 32 26 0 0 chrX 4056360 4056399 -172917741 + AT_rich Low_complexity Low_complexity 1 39 0 1049 156 0 0 chrX 4056411 4056565 -172917575 - AluSg/x SINE Alu -32 278 125 2324 192 36 2 chrX 4056682 4057039 -172917101 + L1MA9 LINE L1 5797 6177 -135 234 0 0 0 chrX 4057039 4057065 -172917075 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2324 192 36 2 chrX 4057065 4057201 -172916939 + L1MA9 LINE L1 6177 6307 -5 278 304 35 26 chrX 4058046 4058276 -172915864 + L1ME LINE L1 4488 4719 -1427 449 326 113 53 chrX 4058287 4058539 -172915601 + L1ME LINE L1 4759 4995 -1169 2062 119 10 19 chrX 4058539 4058849 -172915291 + AluSx SINE Alu 2 308 -4 449 326 113 53 chrX 4058849 4059422 -172914718 + L1ME LINE L1 4995 5634 -530 1255 140 8 86 chrX 4059591 4059834 -172914306 + AluJo SINE Alu 86 309 -3 401 161 0 86 chrX 4059960 4060041 -172914099 + FLAM_A SINE Alu 37 110 -32 396 0 0 0 chrX 4060047 4060091 -172914049 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 189 0 0 0 chrX 4060876 4060897 -172913243 + (A)n Simple_repeat Simple_repeat 1 21 0 1728 153 0 0 chrX 4061630 4061989 -172912151 - L1PB4 LINE L1 -19 6137 5707 * 3545 206 37 50 chrX 4061979 4062957 -172911183 + L1MA5 LINE L1 5336 6300 0 21 36 0 0 chrX 4063199 4063227 -172910913 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chrX 4063754 4063787 -172910353 + AT_rich Low_complexity Low_complexity 1 33 0 1754 128 36 32 chrX 4064343 4064624 -172909516 - THE1B LTR MaLR 0 364 83 697 122 0 0 chrX 4064625 4064723 -172909417 + AluJb SINE Alu 11 108 -204 276 100 0 0 chrX 4064726 4064766 -172909374 + (CA)n Simple_repeat Simple_repeat 2 41 0 430 253 0 0 chrX 4064902 4064989 -172909151 - MIR SINE MIR -103 159 73 2170 217 35 2 chrX 4064998 4065482 -172908658 - L1MC3 LINE L1 -10 7775 7276 496 156 31 10 chrX 4065482 4065578 -172908562 + MER4A LTR ERV1 1 98 -566 1970 122 3 22 chrX 4065578 4065930 -172908210 + MER4A LTR ERV1 261 664 0 879 72 171 40 chrX 4065935 4065958 -172908182 + MER4A-int LTR ERV1 3 22 -6576 3647 92 17 31 chrX 4065958 4066478 -172907662 + LTR10D LTR ERV1 1 513 0 879 72 171 40 chrX 4066478 4066606 -172907534 + MER4A-int LTR ERV1 22 174 -6424 394 227 11 0 chrX 4066606 4066694 -172907446 - L1MC3 LINE L1 -503 7282 7194 232 233 0 33 chrX 4066698 4066758 -172907382 - MLT1F1 LTR MaLR -443 124 67 249 298 12 12 chrX 4067006 4067090 -172907050 - L2 LINE L2 -211 3061 2978 1688 179 0 11 chrX 4067432 4067747 -172906393 - AluJo SINE Alu 0 312 1 276 216 72 54 chrX 4067988 4068099 -172906041 + L1MC/D LINE L1 5648 5760 -2048 507 178 0 0 chrX 4068099 4068200 -172905940 + GA-rich Low_complexity Low_complexity 2 102 0 575 171 6 12 chrX 4068916 4069076 -172905064 + GA-rich Low_complexity Low_complexity 1 159 0 356 279 154 48 chrX 4069699 4070029 -172904111 - L2 LINE L2 -388 2926 2562 2354 114 0 0 chrX 4070145 4070452 -172903688 - AluSx SINE Alu -5 307 1 1656 157 27 13 chrX 4070559 4070859 -172903281 + L1MA7 LINE L1 5985 6288 -3 1508 147 47 36 chrX 4070865 4071144 -172902996 + AluJo SINE Alu 1 282 -30 24 32 0 0 chrX 4071144 4071175 -172902965 + AT_rich Low_complexity Low_complexity 1 31 0 1266 199 22 36 chrX 4072166 4072442 -172901698 + AluJo SINE Alu 41 312 0 893 208 99 121 chrX 4072675 4072868 -172901272 + MLT1D LTR MaLR 3 199 -306 3297 148 10 2 chrX 4072868 4073383 -172900757 + L1PA15 LINE L1 5634 6152 -13 893 208 99 121 chrX 4073383 4073703 -172900437 + MLT1D LTR MaLR 199 505 0 689 239 71 49 chrX 4073705 4074063 -172900077 - L2 LINE L2 -172 3141 2770 321 200 29 0 chrX 4074078 4074148 -172899992 - MER20 DNA MER1_type -71 148 77 386 313 79 75 chrX 4074163 4074441 -172899699 - L2 LINE L2 -586 2728 2450 588 255 6 25 chrX 4074758 4074915 -172899225 + MER5B DNA MER1_type 2 155 -23 724 230 141 5 chrX 4074959 4075150 -172898990 + MER20 DNA MER1_type 2 218 -1 972 184 22 83 chrX 4075796 4076024 -172898116 + MER20 DNA MER1_type 5 218 -1 443 250 87 0 chrX 4076438 4076542 -172897598 - MER81 DNA DNA 0 114 2 2269 103 0 3 chrX 4077251 4077551 -172896589 + AluSx SINE Alu 1 299 -13 237 180 0 0 chrX 4077812 4077862 -172896278 + (CATA)n Simple_repeat Simple_repeat 3 52 0 234 152 0 0 chrX 4077969 4078002 -172896138 - Alu SINE Alu -16 117 85 348 83 0 0 chrX 4078825 4078873 -172895267 + (GA)n Simple_repeat Simple_repeat 1 48 0 258 32 0 0 chrX 4079265 4079296 -172894844 + (TAA)n Simple_repeat Simple_repeat 3 33 0 1945 169 16 27 chrX 4080160 4080422 -172893718 - MLT1A1 LTR MaLR -2 363 105 3750 84 2 0 chrX 4080422 4080874 -172893266 - MLT2A2 LTR ERVL 0 453 1 1945 169 16 27 chrX 4080874 4080978 -172893162 - MLT1A1 LTR MaLR -260 105 1 1645 153 16 39 chrX 4081464 4081772 -172892368 - AluJb SINE Alu -11 301 1 1426 182 87 0 chrX 4082756 4083042 -172891098 + AluJo SINE Alu 1 311 -1 468 270 16 24 chrX 4084272 4084398 -172889742 + MER94 DNA DNA 10 134 0 2623 102 25 25 chrX 4084520 4084884 -172889256 - THE1B LTR MaLR 0 364 1 625 269 8 95 chrX 4085037 4085062 -172889078 + LTR52 LTR ERVL 1 27 -394 1712 182 0 10 chrX 4085062 4085359 -172888781 - AluJo SINE Alu -18 294 1 625 269 8 95 chrX 4085359 4085575 -172888565 + LTR52 LTR ERVL 27 221 -200 1596 254 91 9 chrX 4086126 4086575 -172887565 - MLT1E LTR MaLR -12 581 96 634 223 153 0 chrX 4086756 4086958 -172887182 - MER106A DNA MER1_type 0 236 4 598 329 40 0 chrX 4086961 4087183 -172886957 + MIR SINE MIR 20 250 -12 193 209 30 0 chrX 4087605 4087672 -172886468 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 338 294 0 9 chrX 4087690 4087799 -172886341 + (TTCA)n Simple_repeat Simple_repeat 2 109 0 560 162 0 58 chrX 4087799 4087990 -172886150 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 477 249 7 12 chrX 4088058 4088506 -172885634 + (TCCA)n Simple_repeat Simple_repeat 1 445 0 242 217 0 0 chrX 4089665 4089711 -172884429 - L3b LINE CR1 -196 1387 1342 2807 97 19 13 chrX 4089849 4090222 -172883918 + THE1C LTR MaLR 1 375 0 306 164 0 66 chrX 4090547 4090608 -172883532 - MER116 DNA Mariner -1 79 23 1188 178 5 0 chrX 4090987 4091214 -172882926 + AluJo SINE Alu 87 314 0 732 207 67 0 chrX 4091214 4091378 -172882762 - MLT1D LTR MaLR -330 175 1 1565 176 40 29 chrX 4091552 4091830 -172882310 - AluJo SINE Alu -31 281 1 1592 210 36 15 chrX 4091832 4092161 -172881979 + MLT1D LTR MaLR 169 504 -1 874 122 0 46 chrX 4092239 4092370 -172881770 + FLAM_C SINE Alu 1 125 -8 27 0 0 0 chrX 4092370 4092397 -172881743 + AT_rich Low_complexity Low_complexity 1 27 0 8087 98 6 15 chrX 4092426 4093503 -172880637 + MER11C LTR ERVK 1 1067 -4 288 242 15 15 chrX 4093833 4093899 -172880241 + MER81 DNA DNA 2 67 -47 204 291 23 47 chrX 4094034 4094120 -172880020 - L2 LINE L2 0 3272 3189 257 222 0 0 chrX 4094209 4094263 -172879877 + L1MC4 LINE L1 6650 6703 -1339 220 186 51 23 chrX 4094414 4094637 -172879503 + (TA)n Simple_repeat Simple_repeat 1 229 0 * 307 220 38 23 chrX 4094619 4094751 -172879389 + (TTATA)n Simple_repeat Simple_repeat 5 138 0 183 286 18 0 chrX 4095634 4095690 -172878450 + MIR SINE MIR 77 133 -129 222 286 98 38 chrX 4096049 4096182 -172877958 + MIR SINE MIR 29 169 -93 319 221 0 15 chrX 4096333 4096401 -172877739 + MER5A DNA MER1_type 14 80 -109 861 143 0 15 chrX 4096408 4096541 -172877599 + FRAM SINE Alu 24 154 -22 569 139 7 131 chrX 4096541 4096678 -172877462 + MER5A DNA MER1_type 60 179 -10 22 0 0 0 chrX 4096984 4097006 -172877134 + AT_rich Low_complexity Low_complexity 1 22 0 1815 171 0 7 chrX 4097006 4097315 -172876825 - AluJb SINE Alu -5 307 1 880 248 103 31 chrX 4098378 4098914 -172875226 + MLT1E1 LTR MaLR 1 654 0 2823 102 3 3 chrX 4099093 4099457 -172874683 + THE1B LTR MaLR 1 364 0 2586 130 75 0 chrX 4099799 4100200 -172873940 - MSTB1 LTR MaLR -1 431 1 1659 211 18 46 chrX 4100589 4101025 -172873115 - LTR37A LTR ERV1 -2 424 1 1772 164 0 35 chrX 4101156 4101467 -172872673 + AluJo SINE Alu 1 300 -12 2333 208 32 75 chrX 4101520 4102185 -172871955 - MER92B LTR ERV1 0 636 1 2935 122 9 14 chrX 4102662 4103098 -172871042 + MER57B LTR ERV1 1 434 0 1128 201 20 108 chrX 4103352 4103720 -172870420 - MLT1A1 LTR MaLR -1 625 280 2222 106 0 7 chrX 4103720 4104021 -172870119 - AluSx SINE Alu -13 299 1 1128 201 20 108 chrX 4104021 4104258 -172869882 - MLT1A1 LTR MaLR -346 280 24 666 232 38 38 chrX 4104266 4104451 -172869689 - MLT1E2 LTR MaLR -194 432 248 226 287 74 74 chrX 4104450 4104680 -172869460 + MARNA DNA Mariner 341 570 -16 * 756 212 55 84 chrX 4104783 4105127 -172869013 + LTR37A LTR ERV1 27 360 -66 1061 260 157 54 chrX 4105672 4106206 -172867934 + MER69 DNA AcHobo 213 801 -1725 385 264 31 16 chrX 4106207 4106336 -172867804 + MER69 DNA AcHobo 2017 2147 -379 342 215 0 0 chrX 4106479 4106544 -172867596 + MER92C LTR ERV1 1 65 -489 3248 104 18 2 chrX 4106561 4107004 -172867136 - L1PA16 LINE L1 0 6166 5717 308 235 15 0 chrX 4107266 4107334 -172866806 + MER92C LTR ERV1 484 552 -2 1123 137 5 58 chrX 4108229 4108419 -172865721 + AluJb SINE Alu 107 286 -26 245 250 122 71 chrX 4108423 4108619 -172865521 + LTR48 LTR ERV1 575 780 -7 1253 201 79 0 chrX 4108740 4108994 -172865146 + AluJb SINE Alu 1 274 -38 333 0 0 0 chrX 4109016 4109053 -172865087 + (GAAAA)n Simple_repeat Simple_repeat 2 38 0 387 186 0 0 chrX 4109177 4109247 -172864893 - L1MB8 LINE L1 -1 6177 6108 1035 170 18 50 chrX 4109260 4109478 -172864662 - L1MB2 LINE L1 -2 6169 5959 216 0 0 0 chrX 4109479 4109503 -172864637 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1229 24 30 6 chrX 4109513 4109681 -172864459 + (TTTC)n Simple_repeat Simple_repeat 1 172 0 2154 108 0 0 chrX 4109686 4109963 -172864177 - AluSx SINE Alu -35 277 1 1331 185 39 8 chrX 4110361 4110620 -172863520 + L1MB2 LINE L1 5587 5853 -318 368 177 8 32 chrX 4110796 4110872 -172863268 + MER21B LTR ERV1 34 136 -469 448 268 51 22 chrX 4110911 4111049 -172863091 + MER21B LTR ERV1 98 239 -624 836 178 16 0 chrX 4111152 4111281 -172862859 - FLAM_C SINE Alu -11 132 2 853 266 83 66 chrX 4111444 4111672 -172862468 - L1ME2 LINE L1 -19 6145 5922 683 216 61 17 chrX 4111672 4111853 -172862287 - MER53 DNA DNA 0 189 1 853 266 83 66 chrX 4111853 4112106 -172862034 - L1ME2 LINE L1 -242 5922 5656 264 188 34 17 chrX 4112110 4112286 -172861854 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 363 117 49 31 chrX 4112297 4112459 -172861681 + (TCTA)n Simple_repeat Simple_repeat 2 166 0 441 113 21 21 chrX 4112509 4112606 -172861534 + (TCTA)n Simple_repeat Simple_repeat 1 97 0 271 320 160 16 chrX 4112640 4113027 -172861113 + L2 LINE L2 2451 2893 -421 2234 92 0 0 chrX 4113028 4113348 -172860792 - AluSx SINE Alu 0 320 1 1916 153 0 7 chrX 4113634 4113935 -172860205 - AluJb SINE Alu -13 299 1 2005 174 26 3 chrX 4113936 4114280 -172859860 - MER47A DNA MER2_type -6 360 9 210 261 15 0 chrX 4115320 4115385 -172858755 + GA-rich Low_complexity Low_complexity 1 66 0 223 191 0 0 chrX 4115890 4115932 -172858208 + T-rich Low_complexity Low_complexity 1 42 0 219 351 54 0 chrX 4116087 4116198 -172857942 + L2 LINE L2 3197 3313 0 1664 232 27 2 chrX 4118199 4118657 -172855483 + MLT2B1 LTR ERVL 3 515 0 3451 133 27 2 chrX 4118848 4119374 -172854766 - MER41C LTR ERV1 -2 552 14 2182 107 0 0 chrX 4119757 4120068 -172854072 - AluSx SINE Alu 0 312 2 458 184 149 0 chrX 4120466 4120553 -172853587 - MER20 DNA MER1_type 0 219 120 201 74 0 0 chrX 4121197 4121224 -172852916 + (TG)n Simple_repeat Simple_repeat 2 28 0 1981 118 76 0 chrX 4121293 4121582 -172852558 - AluSx SINE Alu -1 311 1 232 175 19 155 chrX 4122101 4122204 -172851936 + L1MC4 LINE L1 6615 6703 -1339 202 162 27 0 chrX 4122205 4122242 -172851898 + (TA)n Simple_repeat Simple_repeat 1 38 0 1854 144 10 10 chrX 4122406 4122705 -172851435 - AluJo SINE Alu -9 303 5 463 303 37 31 chrX 4125382 4125705 -172848435 + L1ME4a LINE L1 5600 5924 -197 601 184 18 110 chrX 4125705 4125804 -172848336 - MER5A DNA MER1_type -28 161 81 1850 158 10 7 chrX 4125804 4126107 -172848033 - AluSx SINE Alu -8 304 1 601 184 18 110 chrX 4126107 4126170 -172847970 - MER5A DNA MER1_type -108 81 14 2702 185 53 42 chrX 4126303 4126381 -172847759 + L1MB5 LINE L1 5541 5617 -557 1762 165 28 92 chrX 4126381 4126781 -172847359 - MLT1A2 LTR MaLR 0 374 1 2702 185 53 42 chrX 4126781 4126829 -172847311 + L1MB5 LINE L1 5617 5663 -511 324 70 0 0 chrX 4126829 4126872 -172847268 + (TG)n Simple_repeat Simple_repeat 2 44 0 236 54 54 0 chrX 4126871 4126908 -172847232 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 * 2702 185 53 42 chrX 4126872 4127406 -172846734 + L1MB5 LINE L1 5663 6173 -1 249 308 77 29 chrX 4127406 4127510 -172846630 + MER5B DNA MER1_type 61 169 -9 312 265 0 12 chrX 4127659 4127742 -172846398 + MER5A DNA MER1_type 13 94 -95 2132 200 48 30 chrX 4127991 4128199 -172845941 - MER66B LTR ERV1 0 486 283 2024 134 7 0 chrX 4128199 4128497 -172845643 - AluSx SINE Alu -11 301 2 2132 200 48 30 chrX 4128497 4128762 -172845378 - MER66B LTR ERV1 -203 283 4 986 221 160 19 chrX 4129443 4129706 -172844434 - AluSg SINE Alu 0 300 1 1013 220 77 10 chrX 4130408 4130617 -172843523 + MER58A DNA MER1_type 2 224 0 193 29 29 29 chrX 4131843 4131878 -172842262 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 729 212 0 14 chrX 4131970 4132116 -172842024 - MER58B DNA MER1_type -1 340 197 328 266 261 5 chrX 4133788 4133995 -172840145 - MIR SINE MIR 0 262 3 1093 202 5 14 chrX 4134007 4134225 -172839915 - MER20 DNA MER1_type -3 216 1 271 246 16 0 chrX 4134225 4134286 -172839854 + MER116 DNA Mariner 4 65 -15 421 114 51 0 chrX 4135429 4135508 -172838632 - L1MD2 LINE L1 0 6359 6277 1075 227 18 0 chrX 4135518 4135738 -172838402 + L1MD1 LINE L1 5918 6141 -101 * 3456 197 67 9 chrX 4135735 4136578 -172837562 - L1M4 LINE L1 -4127 2517 1533 313 262 60 99 chrX 4136954 4137026 -172837114 - L1 LINE L1 -1672 4474 4401 1796 145 0 48 chrX 4137026 4137365 -172836775 - AluJb SINE Alu 0 312 6 313 262 60 99 chrX 4137365 4137544 -172836596 - L1 LINE L1 -1745 4401 4233 326 286 38 0 chrX 4137649 4137782 -172836358 - MER103 DNA DNA -4 162 25 1088 173 72 61 chrX 4138759 4138961 -172835179 - MER58B DNA MER1_type -2080 340 133 1956 131 14 0 chrX 4138961 4139243 -172834897 - AluSx SINE Alu -21 291 6 1088 173 72 61 chrX 4139243 4139318 -172834822 - MER58B DNA MER1_type -2287 133 60 305 284 37 9 chrX 4139365 4139474 -172834666 + L1ME4a LINE L1 5808 5919 -202 1670 164 3 16 chrX 4140146 4140450 -172833690 - AluJb SINE Alu -12 300 1 404 347 46 6 chrX 4141187 4141305 -172832835 - MIR SINE MIR -34 228 99 261 0 0 0 chrX 4141305 4141334 -172832806 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 404 347 46 6 chrX 4141334 4141388 -172832752 - MIR SINE MIR -163 99 49 1278 199 14 0 chrX 4142707 4142923 -172831217 + MER20 DNA MER1_type 1 219 0 1870 141 17 20 chrX 4143877 4144175 -172829965 - AluJb SINE Alu -15 297 1 880 184 60 0 chrX 4145752 4145920 -172828220 - L1MB7 LINE L1 0 6184 6007 1425 177 8 0 chrX 4145943 4146203 -172827937 - L1MB7 LINE L1 -352 5826 5565 292 253 110 34 chrX 4146284 4146430 -172827710 + L2 LINE L2 1882 2038 -1276 262 286 43 0 chrX 4146906 4146976 -172827164 + L2 LINE L2 3196 3268 -4 227 164 77 10 chrX 4146982 4147009 -172827131 + (TA)n Simple_repeat Simple_repeat 1 25 -86 2715 233 51 19 chrX 4147009 4147641 -172826499 + MER82 DNA MER2_type 1 652 -1 227 164 77 10 chrX 4147641 4147717 -172826423 + (TA)n Simple_repeat Simple_repeat 25 111 0 * 276 185 33 82 chrX 4147643 4147827 -172826313 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 281 241 51 6 chrX 4147702 4147860 -172826280 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 2216 118 14 35 chrX 4147897 4148243 -172825897 - THE1B LTR MaLR 0 364 26 6086 124 2 5 chrX 4148243 4149321 -172824819 + L1PB1 LINE L1 5019 6094 -57 259 163 0 0 chrX 4149339 4149382 -172824758 - THE1B LTR MaLR -332 43 1 225 279 13 0 chrX 4149393 4149472 -172824668 + (TA)n Simple_repeat Simple_repeat 1 80 0 397 329 83 45 chrX 4149568 4149966 -172824174 + L2 LINE L2 2365 2777 -537 2347 89 0 10 chrX 4151150 4151497 -172822643 - AluY SINE Alu 0 344 1 237 33 0 0 chrX 4151937 4151967 -172822173 + (CA)n Simple_repeat Simple_repeat 1 30 0 5808 74 4 1 chrX 4155234 4155948 -172818192 + L1PA10 LINE L1 5450 6165 -3 1764 180 0 3 chrX 4156410 4156693 -172817447 + AluJo SINE Alu 1 282 -30 225 0 0 0 chrX 4156700 4156725 -172817415 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 254 302 78 31 chrX 4157674 4157803 -172816337 + MIR SINE MIR 78 212 -50 360 308 52 28 chrX 4157877 4158127 -172816013 - L1ME LINE L1 -297 5824 5569 353 286 43 9 chrX 4159194 4159329 -172814811 - L1MD2 LINE L1 0 6242 6106 1689 141 17 44 chrX 4159536 4159868 -172814272 - AluJo SINE Alu 0 312 1 1106 213 15 0 chrX 4159874 4160076 -172814064 - MER58A DNA MER1_type -15 209 5 1909 127 40 3 chrX 4160208 4160508 -172813632 + AluSx SINE Alu 1 311 -1 276 100 0 0 chrX 4160508 4160548 -172813592 + (GA)n Simple_repeat Simple_repeat 1 40 0 239 132 38 0 chrX 4160683 4160736 -172813404 + (CCTA)n Simple_repeat Simple_repeat 3 57 0 2393 90 0 0 chrX 4361089 4361388 -172612752 - AluSg SINE Alu -11 299 1 884 137 17 105 chrX 4361566 4361830 -172612310 + L1M3 LINE L1 5387 5609 -574 2185 130 0 0 chrX 4361830 4362138 -172612002 + AluSx SINE Alu 1 308 -4 289 276 203 11 chrX 4362148 4362409 -172611731 - L2 LINE L2 -609 2705 2395 812 286 25 0 chrX 4362457 4362660 -172611480 - MER58A DNA MER1_type -16 208 1 380 293 115 13 chrX 4362668 4362825 -172611315 - L2 LINE L2 -1024 2290 2118 438 256 137 21 chrX 4362974 4363134 -172611006 + MIR SINE MIR 2 182 -62 475 246 64 115 chrX 4363734 4363870 -172610270 - L1MC4 LINE L1 -966 7076 6935 660 208 24 8 chrX 4363870 4363995 -172610145 - FLAM_A SINE Alu -6 127 1 475 246 64 115 chrX 4363995 4364171 -172609969 - L1MC4 LINE L1 -1107 6935 6780 329 251 101 84 chrX 4364165 4364344 -172609796 + L1MC5 LINE L1 6999 7180 -781 * 4191 177 29 51 chrX 4364484 4365274 -172608866 - L1MB8 LINE L1 -1 6177 5371 2343 99 0 3 chrX 4365274 4365587 -172608553 - AluSx SINE Alu 0 312 1 4191 177 29 51 chrX 4365587 4365666 -172608474 - L1MB8 LINE L1 -807 5371 5292 3760 136 80 0 chrX 4365666 4366267 -172607873 - L1MC1 LINE L1 0 6333 5685 4191 177 29 51 chrX 4366267 4366392 -172607748 - L1MB8 LINE L1 -886 5292 5166 2418 79 0 10 chrX 4366392 4366696 -172607444 - AluSg SINE Alu -9 301 1 4191 177 29 51 chrX 4366696 4366887 -172607253 - L1MB8 LINE L1 -1012 5166 5007 1443 102 20 0 chrX 4366910 4367202 -172606938 + AluJb SINE Alu 110 405 0 446 167 118 0 chrX 4367202 4367304 -172606836 - L1MB8 LINE L1 -1107 5039 4926 225 271 71 12 chrX 4367349 4367434 -172606706 + L1MC4 LINE L1 7899 7988 -54 1445 180 46 4 chrX 4367706 4368018 -172606122 + MER33 DNA MER1_type 1 313 -11 276 330 52 0 chrX 4368091 4368188 -172605952 + MIR SINE MIR 19 120 -88 204 296 28 14 chrX 4368207 4368278 -172605862 - L2 LINE L2 -4 3309 3238 258 158 0 0 chrX 4368623 4368661 -172605479 + MLT1I LTR MaLR 98 135 -274 421 193 45 23 chrX 4368705 4368793 -172605347 + MLT1G1 LTR MaLR 224 313 -282 1317 158 29 0 chrX 4368818 4369027 -172605113 + MER20 DNA MER1_type 2 216 -3 1503 231 43 5 chrX 4370521 4370893 -172603247 - MER58D DNA MER1_type 0 386 1 297 250 9 37 chrX 4371149 4371257 -172602883 + C-rich Low_complexity Low_complexity 4 108 0 246 256 0 23 chrX 4371265 4371351 -172602789 + (CCG)n Simple_repeat Simple_repeat 2 85 0 23 0 0 0 chrX 4371497 4371520 -172602620 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 4371628 4371657 -172602483 + GC_rich Low_complexity Low_complexity 1 29 0 202 312 130 7 chrX 4371986 4372140 -172602000 - MER5B DNA MER1_type -5 173 1 862 181 82 16 chrX 4372541 4372723 -172601417 + L1M4 LINE L1 4901 5094 -1052 1465 268 92 15 chrX 4373934 4374412 -172599728 - MLT1G1 LTR MaLR -7 588 74 437 167 26 0 chrX 4374733 4374811 -172599329 - MER58 DNA MER1_type 0 2420 2341 1366 174 156 46 chrX 4374816 4375207 -172598933 - MLT1D LTR MaLR -70 435 2 237 195 0 0 chrX 4375208 4375249 -172598891 - MER58 DNA MER1_type -137 78 38 2353 171 10 10 chrX 4375299 4375690 -172598450 - MSTD LTR MaLR -5 391 1 896 147 0 29 chrX 4375919 4376055 -172598085 - FLAM_A SINE Alu -1 132 1 2375 79 16 3 chrX 4376090 4376393 -172597747 - AluSp SINE Alu -6 307 1 1081 156 9 73 chrX 4376680 4376898 -172597242 - MER46A DNA MER2_type -1 235 32 2120 117 3 10 chrX 4376954 4377253 -172596887 + AluSx SINE Alu 1 297 -15 1506 261 156 31 chrX 4377708 4378491 -172595649 + HAL1 LINE L1 1627 2507 0 2920 158 66 19 chrX 4378506 4379037 -172595103 + MER68 LTR ERV1 3 558 -4 1224 172 21 21 chrX 4379541 4379779 -172594361 + L1MD2 LINE L1 6122 6359 0 1530 206 108 30 chrX 4379964 4380397 -172593743 - MLT1C LTR MaLR 0 467 1 1534 156 31 49 chrX 4380782 4381070 -172593070 - MER58 DNA MER1_type -58 283 1 519 17 0 0 chrX 4381100 4381160 -172592980 + (TG)n Simple_repeat Simple_repeat 2 61 0 281 269 201 52 chrX 4381173 4381422 -172592718 - L3 LINE CR1 -640 937 652 2338 86 0 7 chrX 4381488 4381801 -172592339 - AluSx SINE Alu 0 312 1 1975 108 21 7 chrX 4382218 4382532 -172591608 - AluSq SINE Alu 0 318 1 1543 218 121 20 chrX 4382905 4383181 -172590959 - MLT1D LTR MaLR 0 505 258 1897 137 3 36 chrX 4383181 4383488 -172590652 - AluJo SINE Alu -14 298 2 1543 218 121 20 chrX 4383488 4383666 -172590474 - MLT1D LTR MaLR -247 258 5 465 267 33 0 chrX 4383743 4383863 -172590277 + MER94 DNA DNA 10 133 -1 2298 109 0 0 chrX 4384041 4384334 -172589806 - AluSx SINE Alu -19 293 1 241 260 68 14 chrX 4385005 4385078 -172589062 + L1ME LINE L1 5748 5824 -297 331 314 28 28 chrX 4385113 4385280 -172588860 + MIR SINE MIR 13 180 -28 1774 220 15 3 chrX 4385290 4385627 -172588513 - MER58B DNA MER1_type 0 341 1 2401 78 0 16 chrX 4385683 4385991 -172588149 + AluSx SINE Alu 1 303 -9 455 86 71 14 chrX 4386629 4386699 -172587441 - MSTD LTR MaLR -2 394 321 2322 79 0 7 chrX 4386700 4386991 -172587149 + AluSq SINE Alu 2 290 -23 1623 155 51 83 chrX 4387431 4387826 -172586314 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4387832 4387915 -172586225 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4387915 4387929 -172586211 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4387929 4387952 -172586188 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4387952 4387993 -172586147 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4388272 4388366 -172585774 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4388714 4388738 -172585402 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4389081 4389133 -172585007 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4389161 4389256 -172584884 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4389376 4389435 -172584705 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4389679 4389822 -172584318 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4390311 4390332 -172583808 + AT_rich Low_complexity Low_complexity 1 21 0 593 265 111 20 chrX 4390381 4390686 -172583454 - L1MC4 LINE L1 0 8042 7604 627 302 86 7 chrX 4390691 4390969 -172583171 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4391433 4391943 -172582197 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4391984 4392273 -172581867 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4392591 4392718 -172581422 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4393025 4393221 -172580919 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4393686 4393806 -172580334 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4393932 4394050 -172580090 - MIR SINE MIR -121 141 20 2170 102 10 3 chrX 4394363 4394656 -172579484 + AluSq SINE Alu 1 295 -18 3126 167 13 9 chrX 4394662 4395206 -172578934 + MER68 LTR ERV1 17 562 0 192 40 0 0 chrX 4395214 4395239 -172578901 + (TC)n Simple_repeat Simple_repeat 2 26 0 382 216 0 36 chrX 4395376 4395543 -172578597 + CT-rich Low_complexity Low_complexity 4 164 0 18940 49 6 1 chrX 4396157 4399207 -172574933 - L1PA8 LINE L1 -8 6164 3105 2795 29 0 0 chrX 4399817 4400159 -172573981 - AluYa5 SINE Alu 0 342 1 296 282 70 106 chrX 4400170 4400443 -172573697 + L2 LINE L2 3005 3267 -46 1028 157 52 33 chrX 4400527 4400737 -172573403 - MER58 DNA MER1_type -2205 215 2 276 30 0 0 chrX 4401063 4401096 -172573044 + (CA)n Simple_repeat Simple_repeat 2 34 0 212 175 0 25 chrX 4403236 4403276 -172570864 + (TG)n Simple_repeat Simple_repeat 2 40 0 2594 68 0 3 chrX 4404275 4404585 -172569555 + AluY SINE Alu 1 309 -2 935 99 7 0 chrX 4404585 4404726 -172569414 + (TA)n Simple_repeat Simple_repeat 2 143 0 381 297 45 0 chrX 4405781 4405892 -172568248 + L2 LINE L2 3197 3312 -1 1140 138 40 62 chrX 4406726 4406950 -172567190 + MER20 DNA MER1_type 1 219 0 1696 126 67 22 chrX 4407308 4407611 -172566529 + AluSg SINE Alu 1 315 0 2076 153 12 21 chrX 4409572 4409911 -172564229 + MER58B DNA MER1_type 5 340 -1 494 274 153 6 chrX 4410687 4410844 -172563296 + MER5A DNA MER1_type 10 189 0 259 286 63 48 chrX 4410849 4410975 -172563165 + MIR SINE MIR 19 146 -62 1535 159 132 25 chrX 4410985 4411311 -172562829 - MLT1A1 LTR MaLR 0 365 5 387 336 18 21 chrX 4411423 4411666 -172562474 - MIR SINE MIR -2 260 20 863 213 4 101 chrX 4412232 4412509 -172561631 - MIR SINE MIR -6 256 7 249 21 43 43 chrX 4412549 4412596 -172561544 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 1054 164 13 69 chrX 4412784 4413016 -172561124 + MER20 DNA MER1_type 1 219 0 389 86 17 0 chrX 4414696 4414754 -172559386 - L1PA6 LINE L1 -3 6151 6093 3268 111 45 17 chrX 4415270 4416208 -172557932 + MER11C LTR ERVK 1 1071 0 361 291 34 8 chrX 4416517 4416634 -172557506 + L2 LINE L2 3192 3311 -2 267 372 34 34 chrX 4416672 4416820 -172557320 - L2 LINE L2 0 3272 3125 2088 132 10 10 chrX 4416945 4417256 -172556884 + AluJb SINE Alu 1 311 -1 1480 112 8 33 chrX 4418162 4418403 -172555737 - MER65C LTR ERV1 0 461 227 2537 147 45 2 chrX 4418406 4418808 -172555332 + MSTB LTR MaLR 8 426 0 1288 163 13 13 chrX 4418808 4419041 -172555099 - MER65C LTR ERV1 -228 233 1 2067 144 0 3 chrX 4419135 4419433 -172554707 - AluSx SINE Alu -15 297 1 782 151 27 62 chrX 4419602 4419748 -172554392 - FLAM_C SINE Alu -1 142 2 2337 102 10 0 chrX 4420310 4420614 -172553526 + AluSx SINE Alu 1 307 -5 25 31 0 0 chrX 4420954 4420986 -172553154 + AT_rich Low_complexity Low_complexity 1 32 0 637 282 72 0 chrX 4421111 4421292 -172552848 - MIR SINE MIR -66 196 3 389 306 19 64 chrX 4421359 4421516 -172552624 - L2 LINE L2 -7 3265 3116 261 0 0 0 chrX 4421938 4421967 -172552173 + (T)n Simple_repeat Simple_repeat 1 29 0 818 129 0 168 chrX 4423298 4423500 -172550640 - MER45A DNA AcHobo -10 168 1 2430 93 0 0 chrX 4423808 4424118 -172550022 + AluSg SINE Alu 1 310 0 657 86 0 0 chrX 4424144 4424237 -172549903 + L1M3 LINE L1 5588 5680 -500 1659 141 160 10 chrX 4424237 4424549 -172549591 - MSTA LTR MaLR -69 359 1 440 254 137 50 chrX 4424880 4425377 -172548763 + L1M4 LINE L1 2922 3461 -2685 3122 150 46 28 chrX 4425471 4425607 -172548533 - L1MB4 LINE L1 -2 6178 6046 1965 148 34 0 chrX 4425607 4425904 -172548236 + AluSx SINE Alu 1 307 -5 3122 150 46 28 chrX 4425904 4426332 -172547808 - L1MB4 LINE L1 -134 6046 5604 1565 170 0 8 chrX 4426648 4426913 -172547227 + AluJb SINE Alu 39 301 -11 272 275 79 62 chrX 4426916 4427094 -172547046 + L1P4 LINE L1 5417 5597 -568 29 0 0 0 chrX 4427366 4427395 -172546745 + GC_rich Low_complexity Low_complexity 1 29 0 2013 128 0 0 chrX 4427590 4427864 -172546276 + AluSx SINE Alu 1 274 -38 214 230 37 118 chrX 4428686 4428821 -172545319 + L2 LINE L2 2832 2955 -358 3249 157 23 14 chrX 4428848 4429404 -172544736 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 4429404 4429988 -172544152 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 4429992 4430318 -172543822 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 4430351 4430471 -172543669 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 4430953 4430980 -172543160 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 4432137 4432338 -172541802 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 4432351 4432656 -172541484 + L1ME4a LINE L1 5790 6104 -17 3687 155 102 23 chrX 4433378 4434107 -172540033 + LTR48 LTR ERV1 2 787 0 835 134 0 24 chrX 4434420 4434547 -172539593 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 4434886 4435064 -172539076 + MER5A DNA MER1_type 7 183 -6 1149 179 6 35 chrX 4435114 4435437 -172538703 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 4435568 4435893 -172538247 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 4435915 4436044 -172538096 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 4436086 4436752 -172537388 + L1ME1 LINE L1 5467 6161 -5 180 0 0 0 chrX 4436761 4436781 -172537359 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2341 96 0 19 chrX 4436914 4437226 -172536914 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 4437669 4437710 -172536430 + A-rich Low_complexity Low_complexity 2 42 0 2684 187 27 32 chrX 4438820 4439414 -172534726 + L1ME3 LINE L1 5572 6162 0 188 297 33 44 chrX 4439561 4439652 -172534488 - L2 LINE L2 -18 3295 3206 2083 174 119 30 chrX 4440068 4440529 -172533611 - MLT1D LTR MaLR -3 502 1 987 137 0 46 chrX 4440825 4441000 -172533140 - MER20 DNA MER1_type -52 167 1 586 269 52 24 chrX 4441414 4441626 -172532514 + MIR SINE MIR 3 220 -42 742 286 49 53 chrX 4443538 4443822 -172530318 + L1ME4a LINE L1 5539 5822 -299 2359 82 0 16 chrX 4443822 4444125 -172530015 + AluSg SINE Alu 1 298 -12 742 286 49 53 chrX 4444125 4444409 -172529731 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 4444410 4444438 -172529702 + AT_rich Low_complexity Low_complexity 1 28 0 1742 177 7 13 chrX 4444520 4444819 -172529321 - AluJb SINE Alu -15 297 1 2187 82 4 0 chrX 4446313 4446581 -172527559 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 4447120 4447160 -172526980 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2069 91 4 0 chrX 4447986 4448250 -172525890 + AluSp SINE Alu 39 303 -10 307 274 230 22 chrX 4448647 4448782 -172525358 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 4449030 4449065 -172525075 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5277 80 6 3 chrX 4449077 4449718 -172524422 + LTR9B LTR ERV1 1 643 -1 1844 140 0 14 chrX 4449718 4449997 -172524143 - AluSx SINE Alu -37 275 1 729 175 114 81 chrX 4450427 4450638 -172523502 - MER20 DNA MER1_type -1 218 1 658 229 98 71 chrX 4452307 4452730 -172521410 - L2 LINE L2 -124 3189 2743 2673 152 52 7 chrX 4452730 4453190 -172520950 - L1MB5 LINE L1 0 6174 5694 658 229 98 71 chrX 4453190 4453235 -172520905 - L2 LINE L2 -570 2743 2701 2090 97 20 23 chrX 4453613 4453913 -172520227 + AluSg1 SINE Alu 1 299 -10 300 332 135 31 chrX 4455110 4455435 -172518705 + L2 LINE L2 2914 3272 0 240 111 0 0 chrX 4455436 4455472 -172518668 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 4455533 4455565 -172518575 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 565 310 26 0 chrX 4455812 4455967 -172518173 - MIR3 SINE MIR -5 203 45 2301 89 0 35 chrX 4456186 4456501 -172517639 + AluSq SINE Alu 1 304 -9 684 261 101 10 chrX 4456502 4456709 -172517431 + MIR SINE MIR 31 256 -6 484 251 43 59 chrX 4456774 4456908 -172517232 + L1ME3A LINE L1 5986 6118 -52 2914 202 8 8 chrX 4456908 4457427 -172516713 - LTR40a LTR ERVL 0 519 1 484 251 43 59 chrX 4457427 4457479 -172516661 + L1ME3A LINE L1 6118 6169 -1 434 226 83 15 chrX 4457504 4457637 -172516503 + MER103 DNA DNA 5 146 -20 450 249 148 47 chrX 4457641 4457810 -172516330 - MER5A DNA MER1_type 0 189 4 594 260 13 20 chrX 4458436 4458586 -172515554 + MER5B DNA MER1_type 6 154 -24 438 339 44 22 chrX 4458988 4459215 -172514925 + MIR SINE MIR 31 262 0 447 217 181 12 chrX 4459265 4459431 -172514709 + MER5C DNA MER1_type 39 232 -92 313 179 265 8 chrX 4459454 4459571 -172514569 + MER5C DNA MER1_type 172 318 -6 2137 205 116 43 chrX 4459630 4459694 -172514446 - MLT1E LTR MaLR 0 593 535 1822 174 10 3 chrX 4459694 4460005 -172514135 - AluSq SINE Alu 0 313 1 2137 205 116 43 chrX 4460005 4460492 -172513648 - MLT1E LTR MaLR -58 535 2 219 167 0 0 chrX 4461214 4461256 -172512884 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2226 50 0 0 chrX 4461256 4461515 -172512625 + AluY SINE Alu 40 298 -13 1391 161 49 67 chrX 4462353 4462682 -172511458 - MER33 DNA MER1_type -1 323 1 385 129 14 43 chrX 4463508 4463578 -172510562 - MLT1G LTR MaLR -300 290 223 1962 152 0 13 chrX 4463736 4464051 -172510089 - AluSx SINE Alu -1 311 1 794 280 149 30 chrX 4464410 4464839 -172509301 - MLT1H1 LTR MaLR -8 547 68 1997 149 0 7 chrX 4464979 4465301 -172508839 - AluJb SINE Alu 0 312 1 2294 108 0 3 chrX 4465762 4466068 -172508072 + AluSx SINE Alu 1 305 -7 1428 188 48 72 chrX 4467047 4467218 -172506922 + Charlie1b DNA MER1_type 93 267 -2494 1930 164 7 0 chrX 4467218 4467528 -172506612 + AluJo SINE Alu 1 312 0 1428 188 48 72 chrX 4467528 4467798 -172506342 + Charlie1b DNA MER1_type 267 523 0 602 239 24 106 chrX 4467806 4467942 -172506198 + MIR SINE MIR 29 137 -125 2077 117 0 3 chrX 4467942 4468249 -172505891 + AluSx SINE Alu 1 306 0 602 239 24 106 chrX 4468249 4468366 -172505774 + MIR SINE MIR 137 262 0 274 326 70 8 chrX 4468363 4468492 -172505648 - L2 LINE L2 0 3272 3136 * 275 297 136 8 chrX 4468736 4468854 -172505286 - L2 LINE L2 -4 3268 3136 241 294 84 25 chrX 4469090 4469209 -172504931 - MIR SINE MIR -111 151 26 1849 174 0 0 chrX 4469278 4469572 -172504568 + AluJb SINE Alu 1 294 -18 1563 153 108 28 chrX 4469583 4469871 -172504269 + AluJo SINE Alu 2 312 0 2104 112 52 33 chrX 4469983 4470313 -172503827 + THE1B LTR MaLR 29 364 0 12985 80 1 3 chrX 4470313 4471896 -172502244 + THE1B-int LTR MaLR 1 1580 0 2637 78 50 31 chrX 4471896 4472253 -172501887 + THE1B LTR MaLR 1 364 0 204 40 0 0 chrX 4473256 4473281 -172500859 + (CA)n Simple_repeat Simple_repeat 2 26 0 854 158 0 0 chrX 4473287 4473407 -172500733 - FLAM_C SINE Alu -13 120 1 498 311 34 17 chrX 4473864 4474041 -172500099 - MER5A DNA MER1_type -5 184 5 727 280 36 40 chrX 4474909 4475159 -172498981 - MIR SINE MIR 0 262 14 487 225 129 66 chrX 4476029 4476234 -172497906 - L1MC5 LINE L1 -20 7941 7713 1370 140 33 9 chrX 4476234 4476448 -172497692 + MER20 DNA MER1_type 1 219 0 487 225 129 66 chrX 4476448 4476513 -172497627 - L1MC5 LINE L1 -248 7713 7654 256 277 0 60 chrX 4477675 4477758 -172496382 + LTR67 LTR ERVL 103 180 -377 183 156 0 0 chrX 4478421 4478453 -172495687 + GA-rich Low_complexity Low_complexity 2 33 0 551 277 148 61 chrX 4478539 4478918 -172495222 + L1MC4a LINE L1 5522 5933 -1875 28 29 0 0 chrX 4479110 4479145 -172494995 + AT_rich Low_complexity Low_complexity 1 35 0 1837 143 3 17 chrX 4479659 4479976 -172494164 + AluSx SINE Alu 1 313 0 1197 215 9 5 chrX 4481981 4482204 -172491936 - MER58A DNA MER1_type 0 224 1 2304 105 3 0 chrX 4482386 4482690 -172491450 - AluSp SINE Alu -8 305 1 187 368 0 0 chrX 4483053 4483121 -172491019 + L2 LINE L2 2411 2478 -836 2201 132 3 0 chrX 4483313 4483624 -172490516 + AluSx SINE Alu 1 312 0 392 194 223 109 chrX 4483684 4483931 -172490209 + ORSL DNA AcHobo 1 275 0 297 271 14 0 chrX 4484318 4484388 -172489752 - L2 LINE L2 0 3272 3202 1302 140 14 14 chrX 4485139 4485353 -172488787 - MER20 DNA MER1_type 0 219 6 484 314 18 0 chrX 4485471 4485640 -172488500 + MER5B DNA MER1_type 7 178 0 305 358 101 28 chrX 4485750 4485968 -172488172 - L2 LINE L2 -12 3260 3027 263 222 42 62 chrX 4486352 4486496 -172487644 - L1MC5 LINE L1 -37 7924 7784 1958 147 6 13 chrX 4487652 4487788 -172486352 + AluJb SINE Alu 1 136 -176 2024 115 6 43 chrX 4487788 4488110 -172486030 + AluSx SINE Alu 1 310 -2 1958 147 6 13 chrX 4488110 4488287 -172485853 + AluJb SINE Alu 136 312 0 1541 133 4 0 chrX 4490917 4491143 -172482997 - L1PA15 LINE L1 -4 6161 5935 2486 60 3 0 chrX 4492029 4492328 -172481812 + AluY SINE Alu 1 300 -11 460 267 193 41 chrX 4493822 4494185 -172479955 - L2 LINE L2 -2025 1289 872 557 293 39 6 chrX 4494215 4494396 -172479744 + MIR SINE MIR 8 194 -68 581 246 56 6 chrX 4494467 4494646 -172479494 - L2 LINE L2 -2464 850 663 237 200 18 0 chrX 4498280 4498335 -172475805 - PABL_A LTR ERV1 -183 477 422 267 173 0 0 chrX 4499029 4499081 -172475059 + (TG)n Simple_repeat Simple_repeat 2 53 0 224 210 0 16 chrX 4499107 4499169 -172474971 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 1162 169 19 0 chrX 4499169 4499376 -172474764 - L1MC1 LINE L1 -10 6323 6113 242 318 95 16 chrX 4500236 4500362 -172473778 + MIR SINE MIR 125 260 -2 1859 143 66 9 chrX 4500381 4500716 -172473424 - L1MA4 LINE L1 -6 6294 5941 2297 96 3 3 chrX 4501804 4502107 -172472033 + AluSx SINE Alu 1 303 -9 231 118 0 0 chrX 4503457 4503491 -172470649 - L1ME1 LINE L1 -10 6156 6123 229 208 21 0 chrX 4503620 4503668 -172470472 + MIR3 SINE MIR 130 178 -30 570 240 72 50 chrX 4504685 4504906 -172469234 + L2 LINE L2 3088 3313 0 1346 247 29 18 chrX 4505098 4505482 -172468658 + L1ME1 LINE L1 5771 6161 -5 375 23 0 0 chrX 4507363 4507407 -172466733 + (TC)n Simple_repeat Simple_repeat 1 44 0 2362 62 23 13 chrX 4508581 4508888 -172465252 + AluY SINE Alu 2 311 0 330 305 133 17 chrX 4509641 4509874 -172464266 + L2 LINE L2 2712 2971 -343 1003 171 6 0 chrX 4509879 4510049 -172464091 + FRAM SINE Alu 4 174 -2 442 194 48 48 chrX 4510850 4510974 -172463166 + MIR SINE MIR 65 188 -74 1706 158 14 0 chrX 4511002 4511280 -172462860 + AluJo SINE Alu 1 282 -30 269 238 125 12 chrX 4511357 4511437 -172462703 - MIR3 SINE MIR -2 206 118 385 250 80 46 chrX 4511747 4511942 -172462198 + L1MB3 LINE L1 5522 5711 -410 1607 111 4 26 chrX 4511986 4512220 -172461920 - AluSg/x SINE Alu -3 309 81 3851 210 21 1 chrX 4512320 4513173 -172460967 - L1 LINE L1 -1282 4864 3993 1661 132 0 31 chrX 4513186 4513340 -172460800 - AluSx SINE Alu -24 288 144 444 37 0 0 chrX 4513340 4513394 -172460746 + (TG)n Simple_repeat Simple_repeat 2 55 0 1661 132 0 31 chrX 4513394 4513497 -172460643 - AluSx SINE Alu -168 144 39 955 209 4 53 chrX 4513597 4513841 -172460299 + L1MB3 LINE L1 5950 6181 -2 1030 288 104 32 chrX 4513897 4514646 -172459494 + L1M4 LINE L1 4471 5273 -873 188 256 0 0 chrX 4514881 4514920 -172459220 - L2 LINE L2 -20 3252 3214 1894 168 6 3 chrX 4515146 4515462 -172458678 + MER2 DNA MER2_type 28 344 -1 1717 172 84 3 chrX 4515861 4516244 -172457896 - Charlie1b DNA MER1_type -1 522 109 238 280 53 67 chrX 4516409 4516559 -172457581 + MER5A DNA MER1_type 2 149 -40 513 103 0 0 chrX 4516720 4516788 -172457352 - AluS SINE Alu -244 69 2 5453 126 57 32 chrX 4516792 4517808 -172456332 + MER4B-int LTR ERV1 3419 4459 -2139 1629 115 4 4 chrX 4517816 4518042 -172456098 - AluSg/x SINE Alu -14 298 73 2257 99 13 19 chrX 4518050 4518362 -172455778 + MER4A LTR ERV1 355 664 0 3931 144 49 68 chrX 4518848 4519021 -172455119 + MER4B-int LTR ERV1 1433 1608 -4990 2175 120 14 0 chrX 4519021 4519312 -172454828 - AluSx SINE Alu -17 295 1 3931 144 49 68 chrX 4519312 4520393 -172453747 + MER4B-int LTR ERV1 1608 2485 -4113 1017 68 83 0 chrX 4520398 4520530 -172453610 - AluSp/q SINE Alu -10 303 161 213 282 14 0 chrX 4521137 4521208 -172452932 + (TATATG)n Simple_repeat Simple_repeat 6 77 0 234 0 0 0 chrX 4521371 4521397 -172452743 + (CA)n Simple_repeat Simple_repeat 2 27 0 3720 123 0 29 chrX 4521408 4521660 -172452480 + L1P LINE L1 3497 3755 -2391 1750 155 54 0 chrX 4521660 4521937 -172452203 + AluSx SINE Alu 1 292 -20 3720 123 0 29 chrX 4521937 4522278 -172451862 + L1P LINE L1 3755 4073 -2073 475 162 338 7 chrX 4522529 4522671 -172451469 - MER5A DNA MER1_type 0 189 1 359 256 144 0 chrX 4522857 4522982 -172451158 + MIR SINE MIR 108 250 -12 220 0 27 54 chrX 4523239 4523276 -172450864 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1920 164 0 10 chrX 4523295 4523607 -172450533 - AluJb SINE Alu -3 309 1 2417 224 36 18 chrX 4524063 4524665 -172449475 + L1MC4 LINE L1 7316 7928 -114 589 220 0 50 chrX 4524672 4524831 -172449309 + L1MC4 LINE L1 7892 8042 0 1486 224 97 84 chrX 4525246 4526106 -172448034 + L2 LINE L2 2284 3165 -148 4921 51 1 40 chrX 4526154 4526824 -172447316 + SVA Other Other 1 644 -742 229 83 0 125 chrX 4526924 4526972 -172447168 - Alu SINE Alu -68 65 24 628 64 0 0 chrX 4526987 4527065 -172447075 + LTR49 LTR ERV1 517 594 -1 362 246 133 74 chrX 4527065 4527268 -172446872 + MIR SINE MIR 47 261 -1 2130 141 0 3 chrX 4527599 4527905 -172446235 + AluJo SINE Alu 1 305 -7 2046 130 27 0 chrX 4528116 4528415 -172445725 + AluSx SINE Alu 1 307 -5 413 200 117 8 chrX 4528531 4528651 -172445489 + L1ME2 LINE L1 6023 6155 -9 237 234 16 16 chrX 4529098 4529162 -172444978 + CT-rich Low_complexity Low_complexity 1 64 0 288 0 0 0 chrX 4529241 4529273 -172444867 + (TG)n Simple_repeat Simple_repeat 2 33 0 2324 106 3 0 chrX 4529304 4529615 -172444525 + AluSx SINE Alu 1 312 0 828 140 78 39 chrX 4529678 4529857 -172444283 - MER53 DNA DNA -3 186 1 23 0 0 0 chrX 4531233 4531256 -172442884 + AT_rich Low_complexity Low_complexity 1 23 0 3834 138 87 43 chrX 4531504 4531821 -172442319 - MER4-int LTR ERV1 -4794 1804 1502 186 43 0 0 chrX 4531821 4531844 -172442296 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3834 138 87 43 chrX 4531844 4532163 -172441977 - MER4-int LTR ERV1 -5096 1502 1198 369 0 0 0 chrX 4532163 4532204 -172441936 + (CA)n Simple_repeat Simple_repeat 2 42 0 3834 138 87 43 chrX 4532204 4532467 -172441673 - MER4-int LTR ERV1 -5400 1198 865 229 192 19 39 chrX 4532467 4532519 -172441621 - LTR49 LTR ERV1 -282 313 263 447 70 9 49 chrX 4532580 4532695 -172441445 - MER4-int LTR ERV1 -5769 829 654 2750 82 95 7 chrX 4532695 4533107 -172441033 + LTR7 LTR ERV1 1 448 -2 20591 86 31 21 chrX 4533109 4536064 -172438076 + HERVH LTR ERV1 1 2987 -4726 947 128 20 0 chrX 4536058 4536206 -172437934 + HERVH LTR ERV1 3140 3290 -4423 * 3365 110 10 6 chrX 4536196 4536696 -172437444 + HERVH LTR ERV1 3492 3993 -3720 4436 141 0 6 chrX 4536698 4537364 -172436776 + HERVH LTR ERV1 4488 5149 -2564 1418 130 19 0 chrX 4537365 4537581 -172436559 + HERVH LTR ERV1 5600 5819 -1894 2470 85 50 13 chrX 4537581 4537957 -172436183 + HERVH LTR ERV1 7324 7713 0 2770 85 95 5 chrX 4537957 4538368 -172435772 + LTR7 LTR ERV1 1 448 -2 224 181 0 34 chrX 4538376 4538443 -172435697 + A-rich Low_complexity Low_complexity 1 64 0 1321 71 0 0 chrX 4538566 4538721 -172435419 + AluSg/x SINE Alu 136 290 -22 2799 116 131 4 chrX 4538732 4539212 -172434928 - LTR49 LTR ERV1 -51 736 2 675 204 148 0 chrX 4540212 4540354 -172433786 + MER45A DNA AcHobo 16 178 0 186 250 17 0 chrX 4540398 4540458 -172433682 + MIR SINE MIR 202 262 0 * 227 241 145 0 chrX 4540450 4540533 -172433607 - MIR SINE MIR -107 155 61 209 206 14 82 chrX 4541310 4541383 -172432757 - L2 LINE L2 -208 3064 2997 * 271 280 25 63 chrX 4541372 4541402 -172432738 + MIR SINE MIR 36 66 -196 1854 190 69 52 chrX 4541402 4541897 -172432243 - MLT1D LTR MaLR 0 505 3 271 280 25 63 chrX 4541897 4542049 -172432091 + MIR SINE MIR 66 212 -50 748 150 105 46 chrX 4542164 4542317 -172431823 - MER63A DNA MER1_type -42 168 7 667 176 21 75 chrX 4543151 4543338 -172430802 + MER5B DNA MER1_type 1 177 -1 1600 90 202 101 chrX 4544051 4544418 -172429722 + MER4A LTR ERV1 1 404 -260 1395 170 4 48 chrX 4544519 4544790 -172429350 - AluJb SINE Alu -53 259 1 180 0 0 0 chrX 4544898 4544918 -172429222 + (TAA)n Simple_repeat Simple_repeat 1 20 0 466 335 56 0 chrX 4544927 4545143 -172428997 - MIR SINE MIR -17 245 19 181 302 79 0 chrX 4545180 4545243 -172428897 - MIR3 SINE MIR -14 194 127 2869 125 7 2 chrX 4545345 4545776 -172428364 - MER57B LTR ERV1 0 434 2 2490 82 0 0 chrX 4546939 4547242 -172426898 - AluSg SINE Alu -7 303 1 25 0 0 0 chrX 4547287 4547312 -172426828 + AT_rich Low_complexity Low_complexity 1 25 0 711 279 28 5 chrX 4547610 4547825 -172426315 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4549161 4549228 -172424912 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4549228 4549436 -172424704 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4549444 4549748 -172424392 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4549748 4550147 -172423993 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4550328 4550494 -172423646 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4550494 4550520 -172423620 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4550520 4550643 -172423497 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4551867 4551969 -172422171 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4552015 4552273 -172421867 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4552491 4552792 -172421348 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4554577 4554719 -172419421 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4555000 4555142 -172418998 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4555170 4555310 -172418830 + L2 LINE L2 3066 3211 -102 468 80 23 34 chrX 4556343 4556431 -172417709 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 341 85 0 0 chrX 4556831 4556878 -172417262 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4556882 4556948 -172417192 - MIR SINE MIR -64 144 74 2564 75 0 0 chrX 4557897 4558205 -172415935 + AluSg SINE Alu 1 308 -2 2417 87 0 3 chrX 4558222 4558522 -172415618 + AluSg SINE Alu 1 299 -11 2188 130 0 0 chrX 4558848 4559149 -172414991 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4559577 4559606 -172414534 + AT_rich Low_complexity Low_complexity 1 29 0 6019 96 54 3 chrX 4559928 4560818 -172413322 - Tigger3b DNA MER2_type -2 1229 295 1780 160 0 0 chrX 4560823 4561086 -172413054 + AluJb SINE Alu 5 267 -45 198 302 0 0 chrX 4563174 4563227 -172410913 + L2 LINE L2 3219 3271 -1 480 281 34 92 chrX 4564757 4564995 -172409145 - MIR SINE MIR -3 259 36 1203 200 60 12 chrX 4565080 4565539 -172408601 + MLT1E1 LTR MaLR 109 650 -4 1174 228 62 53 chrX 4566383 4566560 -172407580 - MER58B DNA MER1_type -2079 341 158 4287 88 11 0 chrX 4566560 4567106 -172407034 - L1PA13 LINE L1 0 6163 5612 1174 228 62 53 chrX 4567106 4567266 -172406874 - MER58B DNA MER1_type -2262 158 1 22 0 0 0 chrX 4567589 4567611 -172406529 + AT_rich Low_complexity Low_complexity 1 22 0 841 192 0 0 chrX 4567611 4567736 -172406404 - FLAM_A SINE Alu -8 125 1 199 128 0 43 chrX 4568175 4568222 -172405918 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 194 253 0 13 chrX 4568775 4568854 -172405286 + (TA)n Simple_repeat Simple_repeat 1 78 0 1251 175 29 107 chrX 4569857 4569957 -172404183 - L1MD3 LINE L1 -66 7929 7823 2100 140 0 3 chrX 4569957 4570257 -172403883 + AluSx SINE Alu 1 299 -13 1251 175 29 107 chrX 4570257 4570539 -172403601 - L1MD3 LINE L1 -172 7823 7577 3327 155 103 5 chrX 4570540 4571181 -172402959 + MER39 LTR ERV1 1 644 -9 1177 183 48 44 chrX 4571181 4571454 -172402686 - L1MD3 LINE L1 -412 7583 7310 2974 104 33 19 chrX 4571719 4571786 -172402354 - MSTC LTR MaLR 0 428 363 1386 167 61 64 chrX 4571786 4572097 -172402043 - AluJo SINE Alu 0 312 3 2974 104 33 19 chrX 4572097 4572451 -172401689 - MSTC LTR MaLR -65 363 1 1423 140 44 0 chrX 4572477 4572727 -172401413 + MER63 DNA MER1_type 767 1027 -33 2233 111 3 0 chrX 4573583 4573880 -172400260 - AluSp SINE Alu -15 298 1 2286 118 0 0 chrX 4574544 4574848 -172399292 + AluSx SINE Alu 1 304 -8 3065 214 84 23 chrX 4574860 4575677 -172398463 + L1MC4 LINE L1 7162 8028 -14 3515 48 65 5 chrX 4576086 4576503 -172397637 - MLT2A1 LTR ERVL -2 442 1 981 149 0 19 chrX 4576515 4576669 -172397471 + FRAM SINE Alu 1 143 -33 429 20 0 0 chrX 4576669 4576719 -172397421 + (CA)n Simple_repeat Simple_repeat 1 50 0 321 303 21 31 chrX 4576811 4576970 -172397170 - MIR SINE MIR -48 214 56 346 212 66 133 chrX 4577237 4577478 -172396662 + MER112 DNA MER1_type 28 252 -8 1439 220 137 39 chrX 4578752 4579212 -172394928 + MLT1D LTR MaLR 1 505 0 205 281 18 60 chrX 4579593 4579744 -172394396 + L2 LINE L2 2741 3272 0 294 289 157 0 chrX 4579783 4579904 -172394236 + L2 LINE L2 3133 3272 0 1176 123 0 35 chrX 4579914 4580085 -172394055 + AluJb SINE Alu 132 296 -16 191 317 83 0 chrX 4580847 4580907 -172393233 + L2 LINE L2 3168 3232 -40 2145 98 6 38 chrX 4580993 4581310 -172392830 + AluSx SINE Alu 1 307 -5 1738 144 43 20 chrX 4581451 4581750 -172392390 + AluJb SINE Alu 1 306 -6 198 261 235 17 chrX 4582785 4582904 -172391236 + MIR3 SINE MIR 58 202 -6 192 319 11 21 chrX 4587385 4587479 -172386661 + MIR SINE MIR 55 147 -61 521 242 152 0 chrX 4588675 4588840 -172385300 + MIR SINE MIR 73 262 0 42 48 0 0 chrX 4588948 4589011 -172385129 + AT_rich Low_complexity Low_complexity 1 63 0 202 129 0 0 chrX 4589165 4589196 -172384944 - MIR SINE MIR -68 140 110 932 87 16 0 chrX 4589389 4589515 -172384625 - AluSg/x SINE Alu -8 301 174 352 261 90 0 chrX 4590492 4590603 -172383537 - MIR SINE MIR -49 213 93 272 342 0 54 chrX 4590840 4590951 -172383189 - L3 LINE CR1 -13 1564 1460 684 249 109 13 chrX 4591132 4591361 -172382779 - MIR SINE MIR 0 262 12 1032 113 0 0 chrX 4591484 4591617 -172382523 - FLAM_C SINE Alu 0 133 1 2264 91 3 3 chrX 4591826 4592122 -172382018 - AluSc SINE Alu 0 309 14 738 221 127 0 chrX 4592503 4592661 -172381479 + MER45A DNA AcHobo 1 178 0 1839 137 68 34 chrX 4593626 4593948 -172380192 - MER1B DNA MER1_type 0 337 5 1360 190 135 5 chrX 4593961 4594340 -172379800 - Charlie4a DNA MER1_type -56 452 25 2372 45 0 14 chrX 4594414 4594729 -172379411 - AluY SINE Alu 0 311 1 316 292 31 45 chrX 4595066 4595220 -172378920 - MIR SINE MIR -66 142 42 203 138 0 0 chrX 4595456 4595485 -172378655 + (TGG)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chrX 4595592 4595615 -172378525 + (T)n Simple_repeat Simple_repeat 1 23 0 374 252 0 55 chrX 4595834 4595961 -172378179 + MER77 LTR ERV1 66 185 -420 974 251 102 91 chrX 4595994 4596545 -172377595 + MER21B LTR ERV1 140 696 -167 196 291 47 23 chrX 4596603 4596689 -172377451 - MIR SINE MIR -62 200 113 2397 59 7 10 chrX 4596807 4597111 -172377029 + AluSq SINE Alu 1 303 -10 467 256 66 44 chrX 4597197 4597334 -172376806 - L2 LINE L2 -1 3312 3173 6083 31 1 1 chrX 4597354 4598031 -172376109 - SVA Other Other -1 1385 709 368 338 65 78 chrX 4598719 4599180 -172374960 - L2 LINE L2 0 3272 2818 246 273 189 34 chrX 4599228 4599466 -172374674 - L2 LINE L2 -609 2705 2431 2037 211 45 5 chrX 4600212 4600634 -172373506 + MLT1C LTR MaLR 2 440 -27 302 235 141 0 chrX 4600660 4600745 -172373395 - MIR3 SINE MIR -30 178 82 1293 149 8 47 chrX 4600992 4601081 -172373059 - L1MB7 LINE L1 -80 6104 6016 844 157 3 138 chrX 4601081 4601296 -172372844 - L1MB7 LINE L1 -288 5896 5890 17392 27 0 1 chrX 4601296 4603995 -172370145 - L1PA3 LINE L1 -3 6152 3457 844 157 3 138 chrX 4603995 4604135 -172370005 - L1MB7 LINE L1 -294 5890 5733 2808 150 28 78 chrX 4604363 4604461 -172369679 - LTR36 LTR ERV1 -2 609 508 5842 79 19 1 chrX 4604461 4605230 -172368910 - L1MA1 LINE L1 0 6302 5520 2808 150 28 78 chrX 4605230 4605730 -172368410 - LTR36 LTR ERV1 -103 508 41 191 185 0 93 chrX 4606002 4606056 -172368084 + L2 LINE L2 3219 3267 -5 313 179 0 18 chrX 4607377 4607433 -172366707 + MLT1E LTR MaLR 1 55 -487 962 196 141 28 chrX 4607558 4607988 -172366152 + MLT1E LTR MaLR 81 593 0 2025 140 0 3 chrX 4611375 4611675 -172362465 + AluJo SINE Alu 1 299 -13 537 290 78 42 chrX 4612083 4612300 -172361840 - MIR SINE MIR -34 228 4 260 204 0 0 chrX 4613013 4613057 -172361083 + MLT1E2 LTR MaLR 1 44 -580 1664 236 73 52 chrX 4613103 4613581 -172360559 + MLT1E2 LTR MaLR 139 626 0 290 298 0 75 chrX 4613995 4614072 -172360068 - L2 LINE L2 -176 3096 3015 2022 89 4 0 chrX 4614072 4614329 -172359811 + AluSp SINE Alu 44 301 -12 290 298 0 75 chrX 4614329 4614438 -172359702 - L2 LINE L2 -257 3015 2929 240 273 15 0 chrX 4614620 4614686 -172359454 + L2 LINE L2 1885 1951 -1363 1701 152 17 17 chrX 4614744 4615041 -172359099 + AluJb SINE Alu 1 297 -15 1897 118 3 17 chrX 4615068 4615357 -172358783 - L1MA8 LINE L1 -7 6284 6000 940 271 93 31 chrX 4615452 4615872 -172358268 - L2 LINE L2 -697 2617 2172 359 331 108 14 chrX 4615878 4616165 -172357975 - L1 LINE L1 -1051 5095 4782 1014 281 62 31 chrX 4616204 4616698 -172357442 + L1M3 LINE L1 5293 5838 -330 337 265 282 6 chrX 4616698 4616868 -172357272 - L2 LINE L2 -2 3311 3095 1072 194 5 0 chrX 4616868 4617064 -172357076 - L1MC3 LINE L1 -364 7421 7225 264 100 0 0 chrX 4618116 4618156 -172355984 + (GA)n Simple_repeat Simple_repeat 2 41 0 345 244 85 104 chrX 4618197 4618361 -172355779 + HAL1 LINE L1 61 221 -2286 1944 190 53 31 chrX 4618564 4619016 -172355124 + MLT1C LTR MaLR 3 464 -3 186 212 0 0 chrX 4619967 4620000 -172354140 - L2 LINE L2 -2180 1134 1102 195 42 0 0 chrX 4620326 4620350 -172353790 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 366 261 43 26 chrX 4620360 4620475 -172353665 - MIR3 SINE MIR -52 156 40 1541 99 85 0 chrX 4620806 4621018 -172353122 + MER30 DNA MER1_type 1 230 0 649 273 23 11 chrX 4621554 4621730 -172352410 - MER5B DNA MER1_type 0 178 1 1992 133 0 3 chrX 4621842 4622152 -172351988 - AluSx SINE Alu 0 309 1 2267 64 0 0 chrX 4622383 4622650 -172351490 + AluSx SINE Alu 1 267 -45 237 297 144 17 chrX 4624030 4624148 -172349992 + L2 LINE L2 3140 3272 0 1671 185 102 6 chrX 4624263 4624615 -172349525 + MER58D DNA MER1_type 1 386 0 1938 140 4 4 chrX 4625025 4625335 -172348805 + AluJb SINE Alu 4 313 0 297 0 0 0 chrX 4625495 4625513 -172348627 + (TG)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chrX 4625513 4625546 -172348594 + (TG)n Simple_repeat Simple_repeat 2 34 0 575 203 12 49 chrX 4626042 4626205 -172347935 + MIR SINE MIR 106 262 0 306 248 167 0 chrX 4626991 4627113 -172347027 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4627221 4627258 -172346882 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 499 299 91 32 chrX 4627328 4627733 -172346407 - L1ME4a LINE L1 -3 6118 5690 1802 122 20 0 chrX 4628619 4628905 -172345235 - AluJo SINE Alu 0 316 26 2417 38 42 0 chrX 4628947 4629236 -172344904 - AluY SINE Alu -9 302 2 1908 120 174 23 chrX 4629720 4630071 -172344069 - MER4A LTR ERV1 0 664 261 605 124 21 10 chrX 4630071 4630168 -172343972 - MER4A LTR ERV1 -566 98 1 220 383 109 34 chrX 4630710 4630885 -172343255 + MER5A DNA MER1_type 1 188 -1 822 179 19 26 chrX 4630891 4631047 -172343093 + MER5A DNA MER1_type 31 185 -4 862 201 29 6 chrX 4631074 4631248 -172342892 + MER5B DNA MER1_type 1 178 0 1261 183 117 18 chrX 4631286 4631559 -172342581 + AluJo SINE Alu 1 300 -12 539 210 0 0 chrX 4631681 4631781 -172342359 - MER5A DNA MER1_type -81 108 9 321 322 33 39 chrX 4631832 4632012 -172342128 + L2 LINE L2 2235 2413 -901 391 301 9 9 chrX 4632180 4632293 -172341847 + L2 LINE L2 3158 3270 -2 459 52 0 0 chrX 4632294 4632352 -172341788 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 2036 116 41 7 chrX 4632480 4632774 -172341366 - AluSx SINE Alu -8 304 1 205 188 0 0 chrX 4632796 4632828 -172341312 + L2 LINE L2 3201 3232 -81 240 304 14 0 chrX 4633523 4633618 -172340522 + (CA)n Simple_repeat Simple_repeat 1 96 0 492 86 0 0 chrX 4633620 4633690 -172340450 + (TA)n Simple_repeat Simple_repeat 2 71 0 2373 96 3 0 chrX 4634589 4634890 -172339250 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4634919 4634989 -172339151 + AT_rich Low_complexity Low_complexity 1 70 0 236 220 0 34 chrX 4635115 4635174 -172338966 + L1MC4 LINE L1 6647 6703 -1339 247 208 62 115 chrX 4636442 4636572 -172337568 + MIR SINE MIR 91 213 -49 1643 105 5 0 chrX 4638190 4638409 -172335731 - AluSg/x SINE Alu -10 302 83 2388 84 7 0 chrX 4640784 4641092 -172333048 - AluSg SINE Alu 0 310 1 316 244 52 0 chrX 4645162 4645247 -172328893 - MIR SINE MIR -51 157 68 449 254 59 0 chrX 4645458 4645576 -172328564 + MER94 DNA DNA 2 126 -8 1790 151 10 10 chrX 4645932 4646230 -172327910 + AluJo SINE Alu 3 300 -12 488 173 0 0 chrX 4646599 4646674 -172327466 - AluJ/FLAM SINE Alu -236 76 2 529 134 116 71 chrX 4647524 4647636 -172326504 + MER63 DNA MER1_type 1 743 -93 710 320 76 12 chrX 4647784 4648273 -172325867 + L2 LINE L2 2544 3068 -245 401 247 22 0 chrX 4648307 4648396 -172325744 - MIR SINE MIR 0 262 172 1031 195 44 22 chrX 4648405 4648631 -172325509 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4648631 4648827 -172325313 + AT_rich Low_complexity Low_complexity 1 196 0 235 193 101 118 chrX 4648827 4648946 -172325194 - MER46C DNA MER2_type -203 135 19 2187 113 0 0 chrX 4648947 4649265 -172324875 - AluSq SINE Alu 0 318 1 376 61 0 0 chrX 4649272 4649321 -172324819 - MIR SINE MIR -107 155 107 368 256 136 42 chrX 4649341 4649532 -172324608 + L2 LINE L2 3105 3313 0 242 258 101 22 chrX 4650037 4650126 -172324014 - L2 LINE L2 -40 3232 3137 1033 267 44 85 chrX 4650318 4650846 -172323294 + MLT1J LTR MaLR 6 511 0 833 196 101 6 chrX 4651539 4651707 -172322433 - MER3 DNA MER1_type -25 184 1 509 176 133 66 chrX 4651721 4651931 -172322209 - MER58 DNA MER1_type -5 2415 1 207 272 109 11 chrX 4652180 4652272 -172321868 + L2 LINE L2 3208 3308 -5 343 202 0 140 chrX 4652820 4652934 -172321206 - MER58 DNA MER1_type -243 98 1 255 212 136 68 chrX 4653589 4653721 -172320419 - MIR SINE MIR -14 248 108 2185 120 3 0 chrX 4653952 4654253 -172319887 + AluSx SINE Alu 1 302 -10 3057 82 0 3 chrX 4654348 4654713 -172319427 - THE1B LTR MaLR 0 364 1 387 237 52 21 chrX 4654801 4654898 -172319242 - L2 LINE L2 -3 3269 3170 223 326 11 21 chrX 4655559 4655654 -172318486 + MIR3 SINE MIR 114 207 -1 2110 109 0 0 chrX 4655867 4656172 -172317968 - AluSx SINE Alu 0 305 1 315 313 59 84 chrX 4656222 4656545 -172317595 + L1ME4a LINE L1 5718 6032 -89 1347 307 48 13 chrX 4656716 4657489 -172316651 - L2 LINE L2 -8 3305 2507 233 221 128 12 chrX 4657503 4657589 -172316551 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4657634 4657679 -172316461 + CT-rich Low_complexity Low_complexity 1 45 0 714 218 184 49 chrX 4657682 4658030 -172316110 + MLT1G LTR MaLR 196 590 0 1076 203 98 67 chrX 4659298 4659614 -172314526 - MER58B DNA MER1_type -13 328 3 274 308 29 0 chrX 4659964 4660068 -172314072 + MIR SINE MIR 49 155 -107 577 245 39 101 chrX 4660205 4660452 -172313688 - L1ME4a LINE L1 -225 5896 5670 3194 67 15 0 chrX 4660452 4660854 -172313286 - L1PA10 LINE L1 -1 6167 5760 577 245 39 101 chrX 4660854 4660912 -172313228 - L1ME4a LINE L1 -451 5670 5610 241 333 0 70 chrX 4661592 4661732 -172312408 - MIR SINE MIR -71 191 61 2047 153 80 49 chrX 4661732 4662184 -172311956 + MER31B LTR ERV1 1 466 0 241 333 0 70 chrX 4662184 4662199 -172311941 - MIR SINE MIR -201 61 47 24 32 0 0 chrX 4662951 4662982 -172311158 + AT_rich Low_complexity Low_complexity 1 31 0 1183 178 84 0 chrX 4663364 4663566 -172310574 - MER20 DNA MER1_type 0 219 1 491 306 33 0 chrX 4663944 4664127 -172310013 - MIR SINE MIR 0 262 74 798 241 105 8 chrX 4664374 4664805 -172309335 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4664815 4664971 -172309169 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4665024 4665125 -172309015 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4665374 4665677 -172308463 - AluSg SINE Alu -8 302 1 43809 50 2 1 chrX 4665768 4671903 -172302237 + L1PA5 LINE L1 3 6145 -9 2867 10 0 0 chrX 4672553 4672864 -172301276 - AluYa5 SINE Alu 0 311 1 1361 108 128 5 chrX 4673153 4673357 -172300783 - MER30 DNA MER1_type -1 229 1 727 52 0 4 chrX 4673568 4673667 -172300473 + L1PA5 LINE L1 6044 6142 -13 225 0 0 0 chrX 4673667 4673692 -172300448 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 4673984 4674007 -172300133 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 1878 155 4 0 chrX 4674011 4674288 -172299852 - AluSx SINE Alu -34 278 1 451 296 50 5 chrX 4674742 4674962 -172299178 - L1MC4 LINE L1 0 8042 7813 31048 114 16 54 chrX 4675006 4681410 -172292730 + L1PA8 LINE L1 12 6166 -6 401 214 0 31 chrX 4682031 4682190 -172291950 + GA-rich Low_complexity Low_complexity 3 156 0 192 40 0 0 chrX 4682328 4682353 -172291787 + (GA)n Simple_repeat Simple_repeat 2 26 0 3300 160 12 35 chrX 4682361 4682911 -172291229 - MER68 LTR ERV1 0 562 24 2170 102 10 3 chrX 4682911 4683204 -172290936 - AluSq SINE Alu -18 295 1 3300 160 12 35 chrX 4683204 4683228 -172290912 - MER68 LTR ERV1 -538 24 1 335 108 31 0 chrX 4683241 4683306 -172290834 + (CATA)n Simple_repeat Simple_repeat 2 68 0 536 308 92 15 chrX 4683351 4683679 -172290461 - L1MC4a LINE L1 -1771 6037 5685 587 108 63 36 chrX 4683966 4684077 -172290063 + MER53 DNA DNA 76 189 0 710 216 0 0 chrX 4684111 4684236 -172289904 - FLAM_C SINE Alu -7 126 2 267 217 72 43 chrX 4684328 4684397 -172289743 + MIR3 SINE MIR 5 75 -133 2453 90 0 0 chrX 4684443 4684754 -172289386 + AluSq SINE Alu 1 311 -2 524 228 188 22 chrX 4686828 4687120 -172287020 - MLT1H LTR MaLR -2 553 229 290 293 47 28 chrX 4687161 4687267 -172286873 - MLT1H LTR MaLR -415 127 20 21 0 0 0 chrX 4687682 4687703 -172286437 + AT_rich Low_complexity Low_complexity 1 21 0 281 266 175 22 chrX 4687766 4687945 -172286195 + L1ME LINE L1 5412 5577 -544 554 276 49 6 chrX 4688164 4688327 -172285813 - MER5B DNA MER1_type -6 172 3 207 0 0 0 chrX 4688403 4688426 -172285714 + (A)n Simple_repeat Simple_repeat 1 23 0 2063 156 0 0 chrX 4688550 4688857 -172285283 - AluJo SINE Alu -5 307 1 319 85 21 0 chrX 4689439 4689486 -172284654 - MER5A DNA MER1_type -141 48 1 2174 123 0 10 chrX 4689811 4690139 -172284001 - AluSx SINE Alu 0 312 1 486 305 13 26 chrX 4690152 4690306 -172283834 + MIR3 SINE MIR 54 205 -3 32665 107 10 59 chrX 4690395 4693038 -172281102 + L1PA7 LINE L1 13 2784 -3370 2241 119 3 0 chrX 4693038 4693350 -172280790 + AluSp SINE Alu 1 313 0 32665 107 10 59 chrX 4693350 4697163 -172276977 + L1PA7 LINE L1 2784 6139 -15 1978 137 10 10 chrX 4697296 4697595 -172276545 + AluSq SINE Alu 1 299 -14 2002 141 3 25 chrX 4697670 4697845 -172276295 - AluJb SINE Alu 0 312 146 2433 70 3 0 chrX 4697845 4698147 -172275993 - AluY SINE Alu -8 303 1 2002 141 3 25 chrX 4698147 4698290 -172275850 - AluJb SINE Alu -166 146 1 284 179 0 19 chrX 4698462 4698723 -172275417 + AluJo SINE Alu 1 338 0 709 125 16 16 chrX 4698942 4699070 -172275070 + MER20 DNA MER1_type 5 132 -87 2348 77 3 0 chrX 4699843 4700130 -172274010 + AluSp SINE Alu 3 290 -23 306 50 0 0 chrX 4700283 4700323 -172273817 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 1713 190 103 60 chrX 4700636 4701100 -172273040 - MER31A LTR ERV1 0 485 2 795 177 8 15 chrX 4701283 4701413 -172272727 + FLAM_A SINE Alu 2 130 -3 386 119 0 15 chrX 4701423 4701490 -172272650 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 745 170 0 0 chrX 4702168 4702280 -172271860 + MER81 DNA DNA 3 114 0 372 337 47 18 chrX 4702347 4702516 -172271624 - MIR3 SINE MIR -19 189 16 806 199 0 0 chrX 4702801 4702932 -172271208 - FLAM_A SINE Alu -2 131 1 1890 109 12 4 chrX 4702956 4703212 -172270928 - AluSx SINE Alu -27 285 28 2601 40 0 0 chrX 4703541 4703844 -172270296 - AluY SINE Alu -8 303 1 198 0 0 0 chrX 4704402 4704424 -172269716 + (T)n Simple_repeat Simple_repeat 1 22 0 383 268 142 0 chrX 4704673 4704800 -172269340 - MIR SINE MIR -110 152 8 1088 231 47 0 chrX 4707900 4708112 -172266028 - MER58A DNA MER1_type 0 224 3 292 262 63 74 chrX 4708228 4708400 -172265740 - MIR3 SINE MIR -61 147 1 246 81 0 0 chrX 4708501 4708538 -172265602 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 302 114 0 0 chrX 4708538 4708582 -172265558 + U2 snRNA snRNA 19 62 -126 2947 177 18 14 chrX 4708584 4709149 -172264991 - L1MB4 LINE L1 -19 6161 5595 1047 170 95 10 chrX 4709751 4709951 -172264189 - MER20 DNA MER1_type 0 219 3 835 223 19 43 chrX 4709952 4710163 -172263977 - MER33 DNA MER1_type -114 210 5 625 184 40 24 chrX 4711218 4711343 -172262797 + FLAM_A SINE Alu 1 127 -6 2319 104 10 0 chrX 4711815 4712123 -172262017 - AluSp SINE Alu -2 311 1 2890 195 26 18 chrX 4712131 4712701 -172261439 - L1MB5 LINE L1 -2 6172 5598 192 77 0 0 chrX 4712715 4712741 -172261399 + (T)n Simple_repeat Simple_repeat 1 26 0 482 293 78 28 chrX 4713171 4713458 -172260682 + L1MEc LINE L1 1500 1751 -861 2157 128 0 3 chrX 4713607 4713903 -172260237 + AluJb SINE Alu 1 295 -17 270 247 43 0 chrX 4713904 4713997 -172260143 + L1MEc LINE L1 2208 2304 -4092 25 0 0 0 chrX 4714194 4714219 -172259921 + AT_rich Low_complexity Low_complexity 1 25 0 2242 106 3 0 chrX 4714267 4714570 -172259570 + AluSx SINE Alu 1 304 -8 225 175 208 58 chrX 4715310 4715430 -172258710 + L1ME4a LINE L1 5983 6120 -1 653 263 82 47 chrX 4716581 4716946 -172257194 + L1MB7 LINE L1 5438 5815 -1993 1360 164 26 74 chrX 4717290 4717556 -172256584 + L1MB7 LINE L1 5885 6135 -49 2287 117 0 0 chrX 4717556 4717865 -172256275 - AluSx SINE Alu -3 309 1 1360 164 26 74 chrX 4717865 4717910 -172256230 + L1MB7 LINE L1 6135 6181 -3 1066 177 0 0 chrX 4719342 4719506 -172254634 - FRAM SINE Alu -2 164 1 237 33 0 0 chrX 4720219 4720249 -172253891 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 237 333 10 10 chrX 4721641 4721743 -172252397 + MIR SINE MIR 68 169 -93 243 0 0 0 chrX 4721894 4721921 -172252219 + (CA)n Simple_repeat Simple_repeat 2 28 0 277 261 19 64 chrX 4722025 4722047 -172252093 + L1ME4a LINE L1 5926 5947 -174 2413 77 0 0 chrX 4722047 4722344 -172251796 + AluY SINE Alu 5 301 -10 277 261 19 64 chrX 4722344 4722478 -172251662 + L1ME4a LINE L1 5947 6075 -46 840 168 183 208 chrX 4722808 4723140 -172251000 + MLT1A1 LTR MaLR 1 323 -73 1987 69 126 0 chrX 4723140 4723402 -172250738 - AluSp SINE Alu -17 296 2 840 168 183 208 chrX 4723402 4723473 -172250667 + MLT1A1 LTR MaLR 323 394 -2 2378 81 0 16 chrX 4724111 4724419 -172249721 - AluSx SINE Alu -9 303 1 1774 220 15 3 chrX 4724475 4724812 -172249328 + MER58B DNA MER1_type 1 341 0 331 314 28 28 chrX 4724822 4724989 -172249151 - MIR SINE MIR -28 180 13 241 260 68 14 chrX 4725024 4725097 -172249043 - L1ME LINE L1 -297 5824 5748 2283 113 0 0 chrX 4725768 4726061 -172248079 + AluSx SINE Alu 1 293 -19 465 267 33 0 chrX 4726240 4726360 -172247780 - MER94 DNA DNA -1 133 10 1527 220 121 20 chrX 4726437 4726615 -172247525 + MLT1D LTR MaLR 5 164 -341 1897 137 3 36 chrX 4726615 4726922 -172247218 + AluJo SINE Alu 2 298 -14 1527 220 121 20 chrX 4726922 4727198 -172246942 + MLT1D LTR MaLR 164 505 0 2046 101 22 4 chrX 4727571 4727884 -172246256 + AluSq SINE Alu 1 318 0 2338 86 0 7 chrX 4728301 4728614 -172245526 + AluSx SINE Alu 1 312 0 281 269 201 52 chrX 4728680 4728929 -172245211 + L3 LINE CR1 652 937 -640 393 22 0 0 chrX 4728942 4728988 -172245152 + (CA)n Simple_repeat Simple_repeat 2 47 0 1534 156 31 49 chrX 4729018 4729306 -172244834 + MER58 DNA MER1_type 1 283 -58 1530 206 108 30 chrX 4729691 4730124 -172244016 + MLT1C LTR MaLR 1 467 0 1224 172 21 21 chrX 4730309 4730547 -172243593 - L1MD2 LINE L1 0 6359 6122 2893 160 66 19 chrX 4731051 4731582 -172242558 - MER68 LTR ERV1 -4 558 3 1523 259 156 31 chrX 4731597 4732380 -172241760 - HAL1 LINE L1 0 2507 1627 2123 124 3 3 chrX 4732835 4733134 -172241006 - AluSx SINE Alu -13 299 1 1093 157 9 65 chrX 4733190 4733406 -172240734 + MER46A DNA MER2_type 32 235 -1 2413 73 16 3 chrX 4733693 4733996 -172240144 + AluSp SINE Alu 1 307 -6 896 147 0 29 chrX 4734030 4734166 -172239974 + FLAM_A SINE Alu 1 132 -1 2353 171 10 10 chrX 4734395 4734786 -172239354 + MSTD LTR MaLR 1 391 -5 237 195 0 0 chrX 4734836 4734877 -172239263 + MER58 DNA MER1_type 38 78 -137 1405 174 156 44 chrX 4734878 4735268 -172238872 + MLT1D LTR MaLR 2 435 -70 477 165 13 0 chrX 4735273 4735352 -172238788 + MER58 DNA MER1_type 2341 2420 0 1465 268 92 15 chrX 4735673 4736151 -172237989 + MLT1G1 LTR MaLR 74 588 -7 862 181 82 16 chrX 4737362 4737544 -172236596 - L1M4 LINE L1 -1052 5094 4901 202 312 130 7 chrX 4737945 4738099 -172236041 + MER5B DNA MER1_type 1 173 -5 22 35 0 0 chrX 4738428 4738457 -172235683 + GC_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 4738565 4738588 -172235552 + GC_rich Low_complexity Low_complexity 1 23 0 246 256 0 23 chrX 4738734 4738820 -172235320 + (CGG)n Simple_repeat Simple_repeat 2 85 0 297 250 9 37 chrX 4738828 4738936 -172235204 + G-rich Low_complexity Low_complexity 4 108 0 1503 231 43 5 chrX 4739191 4739563 -172234577 + MER58D DNA MER1_type 1 386 0 1320 158 29 0 chrX 4741057 4741266 -172232874 - MER20 DNA MER1_type -3 216 2 421 193 45 23 chrX 4741291 4741379 -172232761 - MLT1G1 LTR MaLR -282 313 224 258 158 0 0 chrX 4741423 4741461 -172232679 - MLT1I LTR MaLR -274 135 98 204 296 28 14 chrX 4741806 4741877 -172232263 + L2 LINE L2 3238 3309 -4 276 330 52 0 chrX 4741896 4741993 -172232147 - MIR SINE MIR -88 120 19 1445 180 46 4 chrX 4742066 4742378 -172231762 - MER33 DNA MER1_type -11 313 1 287 275 150 31 chrX 4742650 4742810 -172231330 - L1MC4 LINE L1 -54 7988 7810 * 437 176 118 0 chrX 4742780 4742882 -172231258 + L1MB8 LINE L1 4926 5039 -1107 1484 101 15 0 chrX 4742882 4743175 -172230965 - AluJb SINE Alu 0 405 110 4192 174 29 55 chrX 4743198 4743389 -172230751 + L1MB8 LINE L1 5007 5201 -977 2418 79 0 10 chrX 4743389 4743693 -172230447 + AluSg SINE Alu 1 301 -9 4192 174 29 55 chrX 4743693 4743818 -172230322 + L1MB8 LINE L1 5201 5328 -850 3760 136 80 0 chrX 4743818 4744419 -172229721 + L1MC1 LINE L1 5685 6333 0 4192 174 29 55 chrX 4744419 4744498 -172229642 + L1MB8 LINE L1 5328 5408 -770 2357 96 0 3 chrX 4744498 4744810 -172229330 + AluSx SINE Alu 1 311 -1 4192 174 29 55 chrX 4744810 4745605 -172228535 + L1MB8 LINE L1 5408 6177 -1 329 251 101 84 chrX 4745745 4745924 -172228216 - L1MC5 LINE L1 -781 7180 6999 * 458 249 64 115 chrX 4745918 4746094 -172228046 + L1MC4 LINE L1 6780 6935 -1107 660 208 24 8 chrX 4746094 4746219 -172227921 + FLAM_A SINE Alu 1 127 -6 458 249 64 115 chrX 4746219 4746355 -172227785 + L1MC4 LINE L1 6935 7076 -966 438 256 137 21 chrX 4746955 4747115 -172227025 - MIR SINE MIR -62 146 2 398 287 115 13 chrX 4747264 4747421 -172226719 + L2 LINE L2 2118 2290 -1024 812 286 25 0 chrX 4747429 4747632 -172226508 + MER58A DNA MER1_type 1 208 -16 306 296 136 70 chrX 4747680 4747951 -172226189 + L2 LINE L2 2395 2647 -666 2183 130 0 0 chrX 4747951 4748259 -172225881 - AluSx SINE Alu -4 308 1 306 296 136 70 chrX 4748259 4748520 -172225620 + L2 LINE L2 2647 2889 -424 2613 59 0 0 chrX 4748520 4748826 -172225314 - AluY SINE Alu -5 306 1 306 296 136 70 chrX 4748826 4749110 -172225030 + L2 LINE L2 2889 3267 -46 1028 157 52 33 chrX 4749194 4749404 -172224736 - MER58 DNA MER1_type -126 215 2 276 30 0 0 chrX 4749730 4749763 -172224377 + (CA)n Simple_repeat Simple_repeat 2 34 0 416 285 162 1 chrX 4750762 4750939 -172223201 - MIR SINE MIR -19 243 41 28 0 0 0 chrX 4751844 4751872 -172222268 + AT_rich Low_complexity Low_complexity 1 28 0 448 187 0 0 chrX 4752051 4752126 -172222014 + MER116 DNA Mariner 3 77 -3 1240 160 38 9 chrX 4752213 4752426 -172221714 + MER20 DNA MER1_type 1 219 0 1333 203 29 8 chrX 4753026 4753328 -172220812 - L1MD3 LINE L1 -1 7994 7600 2023 121 0 46 chrX 4753508 4753815 -172220325 - AluSx SINE Alu -19 293 1 471 301 7 0 chrX 4753817 4753960 -172220180 + Charlie8 DNA MER1_type 93 236 -2181 1890 162 0 10 chrX 4754784 4755086 -172219054 - AluJb SINE Alu -13 299 1 1266 70 13 0 chrX 4755613 4755769 -172218371 - L1PA10 LINE L1 -4 6164 6007 680 270 64 15 chrX 4755875 4756079 -172218061 - MIR SINE MIR -36 226 13 2217 111 3 0 chrX 4756438 4756735 -172217405 + AluSq SINE Alu 1 298 -15 25 31 0 0 chrX 4756868 4756900 -172217240 + AT_rich Low_complexity Low_complexity 1 32 0 711 150 142 0 chrX 4756900 4757013 -172217127 - AluSg SINE Alu -180 130 2 366 267 56 11 chrX 4757762 4757852 -172216288 - MER91C DNA MER1_type -46 94 1 1276 183 127 4 chrX 4758105 4758373 -172215767 + AluJb SINE Alu 2 302 0 205 257 29 0 chrX 4758563 4758633 -172215507 + (CGCTG)n Simple_repeat Simple_repeat 5 76 0 695 232 54 6 chrX 4759009 4759177 -172214963 - MER5B DNA MER1_type -2 176 1 200 205 0 0 chrX 4759237 4759276 -172214864 + (ATG)n Simple_repeat Simple_repeat 3 41 0 841 188 0 8 chrX 4760705 4760838 -172213302 + FLAM_A SINE Alu 1 132 -1 566 256 106 19 chrX 4760883 4761124 -172213016 + MLT1J1 LTR MaLR 68 340 -106 362 65 0 0 chrX 4761730 4761776 -172212364 + MADE1 DNA Mariner 1 46 -34 256 207 184 23 chrX 4761780 4761867 -172212273 + MIR3 SINE MIR 103 203 -5 1268 187 47 0 chrX 4761943 4762157 -172211983 - MER58A DNA MER1_type 0 224 1 188 200 100 67 chrX 4762335 4762395 -172211745 + MER5A DNA MER1_type 121 182 -7 1816 220 73 109 chrX 4762510 4763168 -172210972 - HAL1 LINE L1 -743 1764 1089 308 153 17 17 chrX 4763168 4763227 -172210913 + MER116 DNA Mariner 9 67 -13 1816 220 73 109 chrX 4763227 4763452 -172210688 - HAL1 LINE L1 -1418 1089 857 325 266 169 16 chrX 4763469 4763593 -172210547 - MIR SINE MIR -2 260 118 494 164 118 9 chrX 4763593 4763703 -172210437 - HAL1 LINE L1 -1643 864 743 1337 186 9 32 chrX 4763712 4764009 -172210131 + MLT1D LTR MaLR 1 332 -173 7351 168 40 1 chrX 4764009 4765940 -172208200 - L1P2 LINE L1 -445 5709 3699 1831 154 7 20 chrX 4765943 4766248 -172207892 - AluJo SINE Alu -11 301 1 711 180 39 0 chrX 4766248 4766376 -172207764 + MLT1D LTR MaLR 373 505 0 1420 189 25 14 chrX 4766519 4766662 -172207478 + MSTD LTR MaLR 1 141 -255 2141 103 0 0 chrX 4766662 4766944 -172207196 + AluSx SINE Alu 1 282 -30 1420 189 25 14 chrX 4766944 4767086 -172207054 + MSTD LTR MaLR 141 289 -107 2022 166 5 87 chrX 4767131 4767547 -172206593 - MLT1B LTR MaLR 0 390 9 798 285 48 22 chrX 4767557 4767869 -172206271 - HAL1 LINE L1 -2187 320 1 2296 114 0 7 chrX 4768204 4768511 -172205629 - AluSx SINE Alu -7 305 1 1590 143 28 16 chrX 4768822 4769073 -172205067 - AluJo SINE Alu -14 298 45 1062 181 68 0 chrX 4769093 4769270 -172204870 + MER5A DNA MER1_type 1 189 0 262 274 48 0 chrX 4769292 4769354 -172204786 + L2 LINE L2 3234 3298 -15 729 259 151 49 chrX 4770298 4770807 -172203333 + MLT1F1 LTR MaLR 1 561 -6 243 0 0 0 chrX 4770873 4770900 -172203240 + (A)n Simple_repeat Simple_repeat 1 27 0 607 260 165 44 chrX 4771105 4771493 -172202647 + MLT1L LTR MaLR 2 436 -179 331 247 32 43 chrX 4771790 4771883 -172202257 + LTR16A1 LTR ERVL 188 279 -178 218 286 16 16 chrX 4771883 4771946 -172202194 - MIR SINE MIR -171 91 29 761 273 4 24 chrX 4772274 4772501 -172201639 + MIR SINE MIR 25 246 -16 360 337 23 55 chrX 4772519 4772952 -172201188 - HAL1 LINE L1 -877 1630 1212 2632 137 145 100 chrX 4773012 4773397 -172200743 - L1MB2 LINE L1 -107 6064 5637 2268 113 0 0 chrX 4773397 4773698 -172200442 - AluSq SINE Alu -12 301 1 2632 137 145 100 chrX 4773698 4773961 -172200179 - L1MB2 LINE L1 -534 5637 5387 2410 90 0 0 chrX 4774139 4774440 -172199700 + AluSg SINE Alu 1 301 -9 2373 76 0 3 chrX 4774950 4775241 -172198899 + AluSq SINE Alu 1 290 -23 1623 155 51 83 chrX 4775681 4776076 -172198064 + MLT2D LTR ERVL 4 480 -40 286 181 48 0 chrX 4776082 4776165 -172197975 + (TATG)n Simple_repeat Simple_repeat 1 87 0 326 134 0 5 chrX 4776165 4776179 -172197961 + MLT2B1 LTR ERVL 391 404 -116 186 43 0 0 chrX 4776179 4776202 -172197938 + (CA)n Simple_repeat Simple_repeat 2 24 0 326 134 0 5 chrX 4776202 4776243 -172197897 + MLT2B1 LTR ERVL 404 520 0 349 223 106 0 chrX 4776522 4776616 -172197524 - Charlie7 DNA MER1_type -2507 105 2 24 0 0 0 chrX 4776964 4776988 -172197152 + AT_rich Low_complexity Low_complexity 1 24 0 213 289 0 0 chrX 4777331 4777383 -172196757 + MER91B DNA MER1_type 79 130 -60 435 232 11 42 chrX 4777411 4777506 -172196634 + MER91B DNA MER1_type 98 189 -1 215 237 0 34 chrX 4777626 4777685 -172196455 - L2 LINE L2 0 3313 3257 302 271 161 9 chrX 4777929 4778072 -172196068 - MIR SINE MIR -65 143 28 21 0 0 0 chrX 4778561 4778582 -172195558 + AT_rich Low_complexity Low_complexity 1 21 0 605 262 101 28 chrX 4778632 4778918 -172195222 - L1MC4 LINE L1 0 8042 7736 627 302 86 7 chrX 4778941 4779219 -172194921 - MLT1H LTR MaLR 0 549 250 2590 194 18 22 chrX 4779683 4780193 -172193947 - LTR31 LTR ERV1 -8 611 104 1841 163 17 0 chrX 4780233 4780522 -172193618 - AluJo SINE Alu -18 294 1 208 331 110 55 chrX 4780840 4780967 -172193173 + MIR SINE MIR 59 192 -70 474 301 56 20 chrX 4781274 4781470 -172192670 - MIR SINE MIR 0 262 60 320 317 50 25 chrX 4781935 4782055 -172192085 - L2 LINE L2 -1 3271 3149 290 297 42 8 chrX 4782181 4782299 -172191841 - MIR SINE MIR -121 141 20 998 201 11 0 chrX 4782485 4782669 -172191471 + MER5A DNA MER1_type 4 189 0 532 302 39 28 chrX 4782785 4782900 -172191240 + MER5A DNA MER1_type 9 128 -61 5576 45 0 0 chrX 4782900 4783527 -172190613 - L1PA5 LINE L1 -2 6152 5526 532 302 39 28 chrX 4783527 4783590 -172190550 + MER5A DNA MER1_type 128 189 0 2099 130 0 3 chrX 4783664 4783971 -172190169 - AluSx SINE Alu -6 306 1 426 342 86 53 chrX 4784064 4784424 -172189716 - L2 LINE L2 -4 3268 2897 1309 119 5 21 chrX 4784598 4784792 -172189348 - MER4A LTR ERV1 0 664 474 234 184 0 0 chrX 4784855 4784893 -172189247 + L1MC/D LINE L1 5660 5697 -545 2815 145 86 43 chrX 4784905 4785485 -172188655 - L1MB7 LINE L1 0 6184 5580 2840 145 117 26 chrX 4785690 4786235 -172187905 - LTR49 LTR ERV1 0 595 1 976 181 0 125 chrX 4786683 4786808 -172187332 - MER20 DNA MER1_type -2 217 78 2113 102 6 35 chrX 4786808 4787121 -172187019 - AluSq SINE Alu -9 304 1 976 181 0 125 chrX 4787121 4787199 -172186941 - MER20 DNA MER1_type -141 78 48 3595 151 50 18 chrX 4787199 4787587 -172186553 + LTR26E LTR ERV1 1 416 -206 1624 104 0 0 chrX 4787587 4787798 -172186342 - AluSg/x SINE Alu -18 292 82 3595 151 50 18 chrX 4787798 4788012 -172186128 + LTR26E LTR ERV1 416 622 0 976 181 0 125 chrX 4788012 4788055 -172186085 - MER20 DNA MER1_type -171 48 1 419 320 16 0 chrX 4788580 4788702 -172185438 - MIR SINE MIR -137 125 2 447 314 24 39 chrX 4789092 4789323 -172184817 - L1ME3A LINE L1 -1 6161 5940 2395 82 3 7 chrX 4789420 4789724 -172184416 - AluSp SINE Alu -10 303 1 738 242 9 3 chrX 4789900 4790074 -172184066 + MLT1F LTR MaLR 1 183 -378 * 2831 250 55 81 chrX 4790073 4791203 -172182937 + MER69B DNA AcHobo 15 1112 -1414 1998 133 3 0 chrX 4791203 4791520 -172182620 + AluSq SINE Alu 1 318 0 2831 250 55 81 chrX 4791520 4791633 -172182507 + MER69B DNA AcHobo 1112 1226 0 272 287 122 9 chrX 4791917 4792032 -172182108 - L2 LINE L2 -458 2856 2729 848 126 21 28 chrX 4793248 4793391 -172180749 - FLAM_C SINE Alu -1 142 1 243 306 16 16 chrX 4793725 4793846 -172180294 + L1 LINE L1 4938 5058 -1088 2418 82 0 0 chrX 4793875 4794169 -172179971 - AluSc SINE Alu -15 294 1 2217 104 17 0 chrX 4794212 4794509 -172179631 + AluSx SINE Alu 1 302 -10 554 319 86 26 chrX 4794798 4795042 -172179098 + HAL1 LINE L1 1241 1524 -983 2269 90 16 10 chrX 4795042 4795352 -172178788 + AluSx SINE Alu 1 312 0 554 319 86 26 chrX 4795352 4795536 -172178604 + HAL1 LINE L1 1524 1695 -812 310 272 62 68 chrX 4795575 4795737 -172178403 + HAL1 LINE L1 1797 1957 -550 640 242 91 80 chrX 4795754 4796018 -172178122 + MLT1H1 LTR MaLR 1 267 -288 2547 64 0 6 chrX 4796045 4796356 -172177784 - AluSp SINE Alu -4 309 1 1528 40 0 0 chrX 4796500 4796673 -172177467 + AluY SINE Alu 131 303 -8 2189 97 7 7 chrX 4796683 4796982 -172177158 + AluSx SINE Alu 1 299 -13 1201 168 22 0 chrX 4797523 4797708 -172176432 - MER5A DNA MER1_type 0 189 1 236 257 95 63 chrX 4798161 4798414 -172175726 + HAL1 LINE L1 2222 2482 -25 531 283 63 19 chrX 4798485 4798690 -172175450 + MIR SINE MIR 49 262 0 5869 83 39 10 chrX 4798956 4799747 -172174393 - L1MA2 LINE L1 0 6304 5491 2340 198 105 70 chrX 4800452 4801082 -172173058 + MLT1E1 LTR MaLR 3 654 0 977 232 14 5 chrX 4801984 4802191 -172171949 - MER3 DNA MER1_type 0 209 1 5326 174 52 14 chrX 4802205 4803244 -172170896 + Tigger6a DNA MER2_type 6 1083 0 306 279 19 39 chrX 4803324 4803428 -172170712 + L2 LINE L2 3171 3272 0 240 111 0 0 chrX 4804258 4804294 -172169846 + (CA)n Simple_repeat Simple_repeat 1 36 0 205 200 0 0 chrX 4804375 4804415 -172169725 + T-rich Low_complexity Low_complexity 1 40 0 360 155 18 31 chrX 4804424 4804498 -172169642 - AluSg/x SINE Alu -120 180 120 263 254 48 24 chrX 4805124 4805250 -172168890 + L1ME4a LINE L1 5940 6068 -53 624 236 130 20 chrX 4805255 4805547 -172168593 + L1MC5 LINE L1 7631 7954 -7 216 97 0 0 chrX 4805684 4805715 -172168425 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 263 113 97 16 chrX 4805715 4805777 -172168363 - Charlie7 DNA MER1_type -86 2526 2460 629 279 43 31 chrX 4806192 4806450 -172167690 - MIR SINE MIR 0 262 2 306 324 19 0 chrX 4806461 4806566 -172167574 + MIR SINE MIR 151 257 -5 31 76 0 0 chrX 4806644 4806710 -172167430 + AT_rich Low_complexity Low_complexity 1 66 0 1875 147 3 21 chrX 4810089 4810374 -172163766 - AluSx SINE Alu -32 280 1 1882 168 0 22 chrX 4810984 4811299 -172162841 - AluJo SINE Alu -3 309 2 1736 153 22 32 chrX 4812018 4812331 -172161809 - AluJo SINE Alu -2 310 1 330 257 86 9 chrX 4812770 4812875 -172161265 + MIR SINE MIR 88 200 -62 2002 118 0 0 chrX 4812924 4813195 -172160945 + AluSx SINE Alu 1 271 -41 1686 167 3 40 chrX 4813619 4813942 -172160198 - AluJb SINE Alu -1 311 1 180 0 0 0 chrX 4814050 4814070 -172160070 + (TAA)n Simple_repeat Simple_repeat 1 20 0 517 335 57 1 chrX 4814079 4814299 -172159841 - MIR SINE MIR -17 245 15 198 302 79 0 chrX 4814332 4814395 -172159745 - MIR3 SINE MIR -14 194 127 3018 125 7 2 chrX 4814497 4814928 -172159212 - MER57B LTR ERV1 0 434 2 201 277 44 66 chrX 4815770 4815907 -172158233 - L2 LINE L2 -10 3303 3170 2461 83 0 0 chrX 4816091 4816393 -172157747 - AluSg SINE Alu -8 302 1 25 0 0 0 chrX 4816438 4816463 -172157677 + AT_rich Low_complexity Low_complexity 1 25 0 773 279 28 5 chrX 4816761 4816976 -172157164 - MIR SINE MIR -3 259 40 1611 208 13 92 chrX 4818312 4818379 -172155761 - MLT1D LTR MaLR 0 505 434 1423 120 10 0 chrX 4818379 4818587 -172155553 - L1PA15 LINE L1 -6 6159 5950 2300 105 3 0 chrX 4818595 4818899 -172155241 - AluSp SINE Alu -8 305 1 1611 208 13 92 chrX 4818899 4819298 -172154842 - MLT1D LTR MaLR -78 427 68 270 325 78 36 chrX 4819479 4819645 -172154495 - MIR SINE MIR 0 262 90 192 77 0 0 chrX 4819645 4819671 -172154469 + (TTA)n Simple_repeat Simple_repeat 2 27 0 890 146 0 0 chrX 4819671 4819794 -172154346 - FLAM_C SINE Alu -20 123 1 204 274 69 39 chrX 4821018 4821120 -172153020 + L2 LINE L2 3162 3266 -6 1308 202 27 0 chrX 4821166 4821424 -172152716 + L1MD3 LINE L1 7729 7993 -2 2383 70 3 3 chrX 4821642 4821943 -172152197 + AluY SINE Alu 1 301 -10 441 268 225 0 chrX 4823728 4823870 -172150270 + MER5A DNA MER1_type 9 182 -7 353 246 49 28 chrX 4824151 4824293 -172149847 + MIR3 SINE MIR 15 159 -49 228 250 114 71 chrX 4824321 4824461 -172149679 + L2 LINE L2 3066 3211 -102 432 83 24 36 chrX 4825494 4825578 -172148562 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 341 85 0 0 chrX 4825978 4826025 -172148115 + MADE1 DNA Mariner 34 80 0 311 212 76 0 chrX 4826029 4826095 -172148045 - MIR SINE MIR -64 144 74 2538 75 0 0 chrX 4827044 4827349 -172146791 + AluSg SINE Alu 1 305 -5 2408 87 0 3 chrX 4827366 4827665 -172146475 + AluSg SINE Alu 1 298 -12 2188 130 0 0 chrX 4827991 4828292 -172145848 + AluSx SINE Alu 1 301 -11 22 35 0 0 chrX 4828720 4828749 -172145391 + AT_rich Low_complexity Low_complexity 1 29 0 3868 96 46 4 chrX 4829070 4829632 -172144508 - Tigger3(Golem) DNA MER2_type -1 3028 2443 277 248 167 0 chrX 4830379 4830501 -172143639 - MIR SINE MIR -62 146 16 236 54 54 0 chrX 4830609 4830646 -172143494 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 471 301 91 32 chrX 4830716 4831121 -172143019 - L1ME4a LINE L1 -3 6118 5690 1817 122 20 0 chrX 4832007 4832293 -172141847 - AluJo SINE Alu 0 316 26 2501 37 41 0 chrX 4832335 4832630 -172141510 - AluY SINE Alu -3 308 2 1910 120 174 23 chrX 4833114 4833465 -172140675 - MER4A LTR ERV1 0 664 261 608 124 21 10 chrX 4833465 4833562 -172140578 - MER4A LTR ERV1 -566 98 1 210 351 0 43 chrX 4834134 4834228 -172139912 - MER5A DNA MER1_type -22 167 78 765 179 19 26 chrX 4834282 4834438 -172139702 + MER5A DNA MER1_type 31 185 -4 801 201 29 6 chrX 4834465 4834639 -172139501 + MER5B DNA MER1_type 1 178 0 1233 184 121 18 chrX 4834677 4834949 -172139191 + AluJo SINE Alu 1 300 -12 506 210 0 0 chrX 4835071 4835171 -172138969 - MER5A DNA MER1_type -81 108 9 285 317 33 39 chrX 4835222 4835402 -172138738 + L2 LINE L2 2235 2413 -901 368 274 9 9 chrX 4835570 4835683 -172138457 + L2 LINE L2 3199 3311 -2 408 40 0 0 chrX 4835692 4835742 -172138398 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 2037 123 38 3 chrX 4835870 4836162 -172137978 - AluSx SINE Alu -10 302 1 194 188 0 0 chrX 4836184 4836216 -172137924 + L2 LINE L2 3201 3232 -81 180 0 0 0 chrX 4836911 4836931 -172137209 + (CA)n Simple_repeat Simple_repeat 1 20 0 207 307 0 27 chrX 4836933 4837008 -172137132 + (CATATA)n Simple_repeat Simple_repeat 2 74 0 366 107 0 0 chrX 4837010 4837066 -172137074 + (TA)n Simple_repeat Simple_repeat 2 57 0 2367 100 3 0 chrX 4837965 4838266 -172135874 + AluSx SINE Alu 1 302 -10 28 86 0 0 chrX 4838295 4838365 -172135775 + AT_rich Low_complexity Low_complexity 1 70 0 230 220 0 34 chrX 4838491 4838550 -172135590 + L1MC4 LINE L1 6647 6703 -1339 200 200 27 136 chrX 4839813 4839923 -172134217 + MIR SINE MIR 91 188 -74 1742 97 4 0 chrX 4841564 4841792 -172132348 - AluSg/x SINE Alu -1 309 81 2409 84 7 0 chrX 4844167 4844475 -172129665 - AluSg SINE Alu 0 310 1 292 244 52 0 chrX 4848545 4848630 -172125510 - MIR SINE MIR -51 157 68 444 254 59 0 chrX 4848841 4848959 -172125181 + MER94 DNA DNA 2 126 -8 1809 151 10 10 chrX 4849315 4849613 -172124527 + AluJo SINE Alu 3 300 -12 460 153 0 0 chrX 4849982 4850054 -172124086 - AluJ/FLAM SINE Alu -236 76 5 524 134 116 71 chrX 4850907 4851019 -172123121 + MER63 DNA MER1_type 1 743 -93 599 325 74 9 chrX 4851167 4851656 -172122484 + L2 LINE L2 2544 3068 -245 378 247 22 0 chrX 4851690 4851779 -172122361 - MIR SINE MIR 0 262 172 1001 199 44 22 chrX 4851788 4852014 -172122126 - MER46C DNA MER2_type 0 338 108 49 107 0 0 chrX 4852014 4852210 -172121930 + AT_rich Low_complexity Low_complexity 1 196 0 227 193 101 118 chrX 4852210 4852329 -172121811 - MER46C DNA MER2_type -203 135 19 2220 109 0 0 chrX 4852330 4852657 -172121483 - AluSq SINE Alu 0 327 1 357 61 0 0 chrX 4852664 4852713 -172121427 - MIR SINE MIR -107 155 107 319 256 136 42 chrX 4852733 4852924 -172121216 + L2 LINE L2 3105 3313 0 212 229 0 33 chrX 4853457 4853518 -172120622 - L2 LINE L2 -77 3195 3137 1019 256 40 49 chrX 4853710 4854057 -172120083 + MLT1J LTR MaLR 6 349 -162 821 196 101 6 chrX 4854931 4855099 -172119041 - MER3 DNA MER1_type -25 184 1 502 176 133 66 chrX 4855113 4855323 -172118817 - MER58 DNA MER1_type -5 2415 1 343 202 0 140 chrX 4856212 4856326 -172117814 - MER58 DNA MER1_type -243 98 1 217 212 136 68 chrX 4856982 4857114 -172117026 - MIR SINE MIR -14 248 108 2199 120 3 0 chrX 4857345 4857646 -172116494 + AluSx SINE Alu 1 302 -10 2883 85 0 3 chrX 4857741 4858106 -172116034 - THE1B LTR MaLR 0 364 1 352 237 52 21 chrX 4858194 4858291 -172115849 - L2 LINE L2 -3 3269 3170 200 337 11 11 chrX 4858953 4859042 -172115098 + MIR3 SINE MIR 114 202 -6 2133 109 0 0 chrX 4859261 4859566 -172114574 - AluSx SINE Alu 0 305 1 1213 301 53 15 chrX 4860110 4860864 -172113276 - L2 LINE L2 -8 3305 2525 208 221 128 12 chrX 4860897 4860983 -172113157 - L2 LINE L2 -1482 1832 1737 246 156 0 0 chrX 4861028 4861073 -172113067 + CT-rich Low_complexity Low_complexity 1 45 0 727 218 184 49 chrX 4861076 4861424 -172112716 + MLT1G LTR MaLR 196 590 0 1063 203 98 67 chrX 4862692 4863008 -172111132 - MER58B DNA MER1_type -13 328 3 241 313 20 0 chrX 4863358 4863457 -172110683 + MIR SINE MIR 49 149 -113 557 243 43 102 chrX 4863599 4863845 -172110295 - L1ME4a LINE L1 -225 5896 5670 3040 67 15 0 chrX 4863845 4864247 -172109893 - L1PA10 LINE L1 -1 6167 5760 557 243 43 102 chrX 4864247 4864305 -172109835 - L1ME4a LINE L1 -451 5670 5610 221 350 0 44 chrX 4864985 4865122 -172109018 - MIR SINE MIR -71 191 61 1904 153 80 49 chrX 4865125 4865577 -172108563 + MER31B LTR ERV1 1 466 0 24 32 0 0 chrX 4866344 4866375 -172107765 + AT_rich Low_complexity Low_complexity 1 31 0 1111 178 84 0 chrX 4866757 4866959 -172107181 - MER20 DNA MER1_type 0 219 1 444 306 33 0 chrX 4867337 4867520 -172106620 - MIR SINE MIR 0 262 74 818 241 105 8 chrX 4867767 4868198 -172105942 + LTR33 LTR ERVL 14 512 -9 404 289 19 13 chrX 4868208 4868364 -172105776 + L1M4 LINE L1 4490 4646 -1500 434 188 20 30 chrX 4868417 4868518 -172105622 + MER20B DNA MER1_type 682 781 -2 2200 116 0 3 chrX 4868767 4869070 -172105070 - AluSg SINE Alu -8 302 1 41321 73 3 2 chrX 4869161 4875297 -172098843 + L1PA7 LINE L1 3 6139 -15 1978 137 10 10 chrX 4875430 4875729 -172098411 + AluSq SINE Alu 1 299 -14 830 96 7 66 chrX 4925993 4926129 -172048011 + FLAM_C SINE Alu 2 129 -4 419 250 230 7 chrX 4926998 4927146 -172046994 + MER5A DNA MER1_type 9 189 0 343 209 18 0 chrX 4927672 4927782 -172046358 + (TCCA)n Simple_repeat Simple_repeat 2 113 0 192 363 73 51 chrX 4927876 4928231 -172045909 + L2 LINE L2 2427 2789 -525 843 157 5 65 chrX 4928380 4928565 -172045575 - Tigger2a DNA MER2_type -260 174 1 974 202 67 14 chrX 4928578 4928786 -172045354 + MER58A DNA MER1_type 3 221 -3 319 209 22 11 chrX 4928790 4928881 -172045259 - HAL1 LINE L1 -171 2336 2245 3363 140 132 6 chrX 4928913 4929541 -172044599 + MER39 LTR ERV1 1 707 0 21 36 0 0 chrX 4930115 4930143 -172043997 + AT_rich Low_complexity Low_complexity 1 28 0 45 34 0 0 chrX 4930850 4930909 -172043231 + AT_rich Low_complexity Low_complexity 1 59 0 2243 121 0 0 chrX 4930937 4931243 -172042897 - AluSx SINE Alu -6 306 1 591 299 105 41 chrX 4931715 4931781 -172042359 + L1ME LINE L1 4862 4922 -1242 2339 67 0 0 chrX 4931781 4932093 -172042047 + AluY SINE Alu 1 312 0 591 299 105 41 chrX 4932093 4932597 -172041543 + L1ME LINE L1 4922 5465 -699 484 261 67 28 chrX 4932766 4933049 -172041091 + HAL1 LINE L1 1032 1325 -1182 195 320 154 0 chrX 4933520 4933598 -172040542 + L2 LINE L2 3147 3236 -36 2016 117 3 10 chrX 4935820 4936111 -172038029 + AluSx SINE Alu 14 302 -10 3043 150 54 9 chrX 4936213 4936422 -172037718 + L1MB5 LINE L1 5577 5775 -399 270 0 0 0 chrX 4936422 4936452 -172037688 + (CA)n Simple_repeat Simple_repeat 2 31 0 3043 150 54 9 chrX 4936452 4936814 -172037326 + L1MB5 LINE L1 5775 6174 0 2367 90 0 0 chrX 4936823 4937122 -172037018 + AluSg SINE Alu 1 299 -11 620 167 121 23 chrX 4938227 4938401 -172035739 - MER33 DNA MER1_type -132 192 2 2291 92 3 0 chrX 4938579 4938871 -172035269 + AluSg SINE Alu 1 293 -17 1605 124 18 0 chrX 4938881 4939107 -172035033 + AluSq SINE Alu 1 230 -83 28 0 0 0 chrX 4939246 4939274 -172034866 + AT_rich Low_complexity Low_complexity 1 28 0 465 228 101 36 chrX 4939536 4939755 -172034385 - L1MC4 LINE L1 -634 7408 7176 943 181 0 0 chrX 4941745 4941889 -172032251 - FAM SINE Alu -22 163 20 222 359 70 0 chrX 4942618 4942746 -172031394 + MIR SINE MIR 58 194 -68 3060 111 99 32 chrX 4943097 4943557 -172030583 + LTR49 LTR ERV1 2 507 -88 1404 161 165 0 chrX 4943557 4943812 -172030328 + AluJb SINE Alu 1 297 -5 3060 111 99 32 chrX 4943812 4943908 -172030232 + LTR49 LTR ERV1 507 595 0 2480 199 102 7 chrX 4943964 4944561 -172029579 - MLT1E1 LTR MaLR 0 654 1 1004 171 40 11 chrX 4944588 4944763 -172029377 + FAM SINE Alu 1 44 -5 206 238 0 0 chrX 4945791 4945833 -172028307 + A-rich Low_complexity Low_complexity 4 45 0 479 253 79 75 chrX 4945957 4945999 -172028141 + MER112 DNA MER1_type 7 47 -213 1853 165 0 10 chrX 4945999 4946296 -172027844 + AluJb SINE Alu 1 294 -18 479 253 79 75 chrX 4946296 4946506 -172027634 + MER112 DNA MER1_type 47 260 0 297 0 0 0 chrX 4949540 4949573 -172024567 + (TA)n Simple_repeat Simple_repeat 1 33 0 314 258 32 16 chrX 4949651 4949775 -172024365 + L1MC4a LINE L1 5788 5913 -1895 358 128 0 26 chrX 4949775 4949853 -172024287 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1882 135 0 11 chrX 4949853 4950134 -172024006 - AluJb SINE Alu -34 278 1 916 216 59 24 chrX 4950671 4950926 -172023214 + L1MC4a LINE L1 6555 6818 -990 2485 213 89 33 chrX 4950943 4951846 -172022294 + L1MC5 LINE L1 6961 7913 -48 381 272 14 14 chrX 4952027 4952174 -172021966 + (TA)n Simple_repeat Simple_repeat 1 147 0 211 214 71 0 chrX 4952679 4952721 -172021419 + MIR SINE MIR 79 123 -139 502 258 52 31 chrX 4953617 4953811 -172020329 - MER58 DNA MER1_type -130 211 14 559 228 24 0 chrX 4953815 4953938 -172020202 + MIR SINE MIR 21 146 -116 22 35 0 0 chrX 4953997 4954026 -172020114 + AT_rich Low_complexity Low_complexity 1 29 0 910 150 56 19 chrX 4954112 4954272 -172019868 - FRAM SINE Alu 0 166 1 2095 127 10 3 chrX 4955000 4955300 -172018840 + AluSx SINE Alu 1 302 -10 1364 109 95 5 chrX 4956111 4956321 -172017819 + MER30 DNA MER1_type 1 229 -1 3978 28 4 0 chrX 4957235 4957707 -172016433 - L1PA5 LINE L1 -6 6148 5675 1420 236 74 7 chrX 4957856 4958342 -172015798 - L2 LINE L2 -3 3310 2789 350 205 128 0 chrX 4958516 4958633 -172015507 - L1ME LINE L1 -5182 888 757 2096 243 53 21 chrX 4958647 4958939 -172015201 - L1ME LINE L1 -5371 699 418 3820 152 52 12 chrX 4958939 4959617 -172014523 + MER44D DNA MER2_type 1 705 0 2096 243 53 21 chrX 4959617 4959998 -172014142 - L1ME LINE L1 -5652 418 4 277 234 11 53 chrX 4961100 4961148 -172012992 + (CATATA)n Simple_repeat Simple_repeat 6 50 -45 441 251 75 48 chrX 4961148 4961375 -172012765 + MER106A DNA MER1_type 1 233 -3 277 234 11 53 chrX 4961375 4961420 -172012720 + (CATATA)n Simple_repeat Simple_repeat 50 95 0 865 223 132 70 chrX 4962092 4962639 -172011501 + MER34C LTR ERV1 4 584 -1 552 202 16 16 chrX 4962639 4962760 -172011380 + MER20 DNA MER1_type 99 219 0 25 31 0 0 chrX 4962761 4962793 -172011347 + AT_rich Low_complexity Low_complexity 1 32 0 1678 205 38 48 chrX 4964220 4964254 -172009886 - Charlie4a DNA MER1_type -1453 508 475 1820 110 64 135 chrX 4964254 4964646 -172009494 - THE1B LTR MaLR 0 364 1 12118 81 4 1 chrX 4964646 4966221 -172007919 - THE1B-int LTR MaLR 0 1580 1 2101 137 80 0 chrX 4966221 4966558 -172007582 - THE1B LTR MaLR 0 364 1 1678 205 38 48 chrX 4966558 4966705 -172007435 - Charlie4a DNA MER1_type -1484 477 330 1010 233 9 5 chrX 4966705 4966920 -172007220 - MER20 DNA MER1_type -3 216 1 1678 205 38 48 chrX 4966920 4967232 -172006908 - Charlie4a DNA MER1_type -1631 330 17 383 336 8 8 chrX 4967327 4967452 -172006688 - MIR3 SINE MIR -31 177 53 1252 183 24 45 chrX 4968264 4968553 -172005587 + MLT1A1 LTR MaLR 3 285 -80 1757 244 96 43 chrX 4968834 4969388 -172004752 + MLT1E LTR MaLR 7 589 -4 2322 100 3 6 chrX 4969732 4970043 -172004097 + AluSg SINE Alu 1 310 0 234 260 0 0 chrX 4970195 4970245 -172003895 + L2 LINE L2 3264 3313 0 516 225 9 18 chrX 4971181 4971292 -172002848 + MER5B DNA MER1_type 34 143 -35 317 220 49 4 chrX 4971313 4971443 -172002697 - MER5A DNA MER1_type 0 189 11 399 276 15 52 chrX 4971506 4971640 -172002500 - MER90 LTR ERV1 0 614 486 679 134 0 18 chrX 4971642 4971754 -172002386 + 7SK RNA RNA 1 110 -83 1224 166 5 10 chrX 4971759 4971830 -172002310 - AluJo SINE Alu -108 204 134 2381 60 0 0 chrX 4971830 4972143 -172001997 - AluY SINE Alu 0 313 1 1224 166 5 10 chrX 4972143 4972275 -172001865 - AluJo SINE Alu -178 134 1 204 308 0 0 chrX 4972312 4972364 -172001776 - MIR SINE MIR -6 256 205 281 245 41 10 chrX 4973729 4973827 -172000313 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 578 282 99 63 chrX 4974268 4974520 -171999620 - MIR SINE MIR 0 262 2 24 0 0 0 chrX 4974634 4974658 -171999482 + AT_rich Low_complexity Low_complexity 1 24 0 2128 121 3 3 chrX 4975076 4975373 -171998767 - AluSx SINE Alu -15 297 1 1044 269 35 57 chrX 4976468 4976707 -171997433 + L2 LINE L2 2921 3149 -164 2832 131 14 36 chrX 4976707 4977149 -171996991 + Tigger2a DNA MER2_type 1 432 -2 1044 269 35 57 chrX 4977149 4977311 -171996829 + L2 LINE L2 3149 3313 0 180 317 58 39 chrX 4977707 4977811 -171996329 - MIR SINE MIR -66 142 37 239 285 126 53 chrX 4978260 4978411 -171995729 - MIR SINE MIR -18 244 83 464 190 93 0 chrX 4978467 4978576 -171995564 - MER45A DNA AcHobo -2 176 58 282 206 0 0 chrX 4979223 4979286 -171994854 + GA-rich Low_complexity Low_complexity 2 64 0 888 207 23 6 chrX 4979505 4979679 -171994461 + MER5B DNA MER1_type 1 177 -1 266 313 0 50 chrX 4979894 4979993 -171994147 - MIR SINE MIR -2 260 167 449 278 233 29 chrX 4980269 4980643 -171993497 - L2 LINE L2 -339 2975 2526 1886 211 68 35 chrX 4980873 4981571 -171992569 + Charlie7 DNA MER1_type 1852 2597 -15 443 274 11 54 chrX 4982767 4982953 -171991187 + LTR33 LTR ERVL 37 214 -307 302 299 19 0 chrX 4982936 4983043 -171991097 + LTR33 LTR ERVL 327 435 -86 * 864 278 27 5 chrX 4983994 4984217 -171989923 + MIR SINE MIR 29 256 -6 2103 60 0 0 chrX 4984220 4984471 -171989669 + L1PA13 LINE L1 5911 6161 -2 346 318 84 38 chrX 4988126 4988365 -171985775 + L1ME LINE L1 4562 4811 -1335 229 264 28 0 chrX 4988463 4988535 -171985605 + Charlie7 DNA MER1_type 1519 1592 -1020 225 194 0 0 chrX 4989486 4989522 -171984618 + L1ME LINE L1 5552 5587 -577 1801 208 25 11 chrX 4990057 4990423 -171983717 + MLT1A2 LTR MaLR 1 371 -3 284 265 143 10 chrX 4991171 4991269 -171982871 - L2 LINE L2 -12 3260 3150 2261 188 81 43 chrX 4992267 4992750 -171981390 - MLT1D LTR MaLR 0 505 5 1930 151 3 35 chrX 4993478 4993796 -171980344 + AluJb SINE Alu 1 308 -4 2048 169 77 12 chrX 4993896 4993986 -171980154 - Charlie1b DNA MER1_type -2320 441 358 2194 122 10 0 chrX 4993986 4994290 -171979850 + AluSx SINE Alu 1 307 -5 2048 169 77 12 chrX 4994290 4994613 -171979527 - Charlie1b DNA MER1_type -2403 358 1 1331 220 11 8 chrX 4995344 4995608 -171978532 + Tigger7 DNA MER2_type 3 267 -466 554 150 20 30 chrX 4995606 4995706 -171978434 + Tigger7 DNA MER2_type 2389 2487 0 * 1867 143 29 0 chrX 4995760 4996068 -171978072 + AluSg SINE Alu 1 316 0 204 233 12 58 chrX 4996856 4996942 -171977198 - MIR SINE MIR -92 170 89 3187 169 19 12 chrX 4999531 5000117 -171974023 - L1MD3 LINE L1 -2 7993 7404 319 253 35 11 chrX 5000117 5000204 -171973936 - MLT1F1 LTR MaLR -442 125 37 677 109 44 36 chrX 5000205 5000342 -171973798 - L1MC3 LINE L1 -687 7098 6961 1171 83 0 6 chrX 5000348 5000505 -171973635 - AluSg/x SINE Alu -20 290 135 1011 179 97 0 chrX 5000513 5000588 -171973552 - L1MD3 LINE L1 -1022 6973 6907 198 0 0 0 chrX 5000588 5000610 -171973530 + (TC)n Simple_repeat Simple_repeat 1 22 0 1011 179 97 0 chrX 5000610 5000729 -171973411 - L1MD3 LINE L1 -1088 6907 6760 1878 188 19 40 chrX 5001159 5001531 -171972609 + MLT1A1 LTR MaLR 2 365 0 479 177 133 26 chrX 5002129 5002162 -171971978 + LTR40b LTR ERVL 331 359 -103 321 26 0 0 chrX 5002162 5002200 -171971940 + (TG)n Simple_repeat Simple_repeat 2 39 0 479 177 133 26 chrX 5002200 5002279 -171971861 + LTR40b LTR ERVL 359 455 -7 41762 57 15 2 chrX 5002424 5006157 -171967983 - L1P2 LINE L1 -584 5571 1741 2499 64 0 0 chrX 5006157 5006452 -171967688 + AluSp SINE Alu 1 295 -18 41762 57 15 2 chrX 5006452 5008206 -171965934 - L1P2 LINE L1 -4414 1741 11 1715 146 8 0 chrX 5008379 5008647 -171965493 + AluJb SINE Alu 40 309 -3 21 0 0 0 chrX 5008994 5009015 -171965125 + AT_rich Low_complexity Low_complexity 1 21 0 329 299 74 7 chrX 5009256 5009399 -171964741 - MIR SINE MIR -62 146 35 226 294 20 10 chrX 5009425 5009527 -171964613 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 304 252 30 96 chrX 5009773 5009908 -171964232 + MIR3 SINE MIR 35 160 -48 2263 97 3 13 chrX 5009919 5010228 -171963912 + AluSp SINE Alu 1 306 -7 252 0 0 0 chrX 5010362 5010390 -171963750 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 513 233 16 31 chrX 5010815 5010944 -171963196 - MIR SINE MIR -82 180 54 906 257 114 32 chrX 5010975 5011343 -171962797 + MLT1H LTR MaLR 22 393 -57 1506 190 7 20 chrX 5011343 5011643 -171962497 + L1MB4 LINE L1 5885 6180 0 906 257 114 32 chrX 5011643 5011707 -171962433 + MLT1H LTR MaLR 393 450 0 23 33 0 0 chrX 5012296 5012326 -171961814 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chrX 5012483 5012512 -171961628 + (TAA)n Simple_repeat Simple_repeat 2 30 0 457 276 8 8 chrX 5013517 5013640 -171960500 - L2 LINE L2 -4 3309 3187 279 308 44 25 chrX 5014233 5014392 -171959748 - MIR SINE MIR -4 258 97 371 242 60 54 chrX 5015046 5015195 -171958945 - MIR SINE MIR -85 177 28 379 293 32 8 chrX 5015315 5015438 -171958702 - MIR SINE MIR -45 217 92 229 388 97 22 chrX 5015840 5016296 -171957844 - L2 LINE L2 -2440 874 385 1574 270 24 0 chrX 5016436 5016817 -171957323 + LTR16C LTR ERVL 100 489 -2 2461 91 3 0 chrX 5018337 5018644 -171955496 + AluSp SINE Alu 1 308 -5 1367 167 0 9 chrX 5019705 5019926 -171954214 + AluJo SINE Alu 85 303 -9 773 306 65 45 chrX 5020248 5020571 -171953569 + L2 LINE L2 2380 2714 -600 1851 122 61 7 chrX 5020571 5020850 -171953290 + AluSx SINE Alu 2 295 -17 773 306 65 45 chrX 5020850 5020925 -171953215 + L2 LINE L2 2714 2786 -528 993 226 72 0 chrX 5020939 5021061 -171953079 - MER58A DNA MER1_type -2196 224 79 1698 206 0 3 chrX 5021061 5021371 -171952769 - AluJb SINE Alu -1 311 3 993 226 72 0 chrX 5021371 5021456 -171952684 - MER58A DNA MER1_type -2341 79 2 520 313 25 95 chrX 5021584 5021910 -171952230 + L2 LINE L2 2966 3268 -4 334 301 88 9 chrX 5021922 5022035 -171952105 + MIR SINE MIR 108 229 -33 543 296 62 16 chrX 5022639 5022896 -171951244 + LTR16C LTR ERVL 223 491 0 803 168 0 8 chrX 5022973 5023092 -171951048 - FLAM_A SINE Alu -15 118 1 24 0 0 0 chrX 5023583 5023607 -171950533 + AT_rich Low_complexity Low_complexity 1 24 0 2277 105 7 0 chrX 5023670 5023976 -171950164 - AluSx SINE Alu -4 308 1 312 260 14 0 chrX 5024122 5024195 -171949945 + MIR SINE MIR 48 121 -141 1590 161 95 3 chrX 5025457 5025742 -171948398 + AluJo SINE Alu 1 311 -1 311 289 22 0 chrX 5025817 5025907 -171948233 + L1MC5 LINE L1 5845 5936 -1872 1609 152 7 45 chrX 5026289 5026558 -171947582 - AluJo SINE Alu -53 259 1 2362 222 97 60 chrX 5026561 5027713 -171946427 + L1MC5 LINE L1 6294 7513 -448 194 301 54 21 chrX 5028080 5028173 -171945967 + MIR SINE MIR 8 103 -159 296 258 62 10 chrX 5028873 5028970 -171945170 + MER20B DNA MER1_type 76 177 -606 702 166 66 91 chrX 5029768 5030009 -171944131 + L1MC5 LINE L1 7653 7887 -74 1205 316 33 24 chrX 5030085 5030664 -171943476 + MLT1K LTR MaLR 2 585 -3 2532 81 0 0 chrX 5030723 5031032 -171943108 + AluSx SINE Alu 1 309 -3 1244 88 0 33 chrX 5031956 5032138 -171942002 + L1PA7 LINE L1 5965 6140 -14 562 306 117 37 chrX 5032315 5032724 -171941416 + MLT1J2 LTR MaLR 1 442 -8 1049 202 17 56 chrX 5033108 5033341 -171940799 + MER58A DNA MER1_type 1 224 0 327 294 39 0 chrX 5033750 5033895 -171940245 - MIR SINE MIR -50 212 62 578 312 60 14 chrX 5033914 5034132 -171940008 - MIR SINE MIR 0 262 35 2179 144 42 31 chrX 5034376 5034736 -171939404 + THE1B LTR MaLR 1 364 0 2292 96 14 0 chrX 5036260 5036553 -171937587 - AluSx SINE Alu -15 297 1 843 264 0 46 chrX 5037034 5037207 -171936933 - L1M3a LINE L1 -4737 2828 2671 2051 125 14 10 chrX 5037207 5037503 -171936637 - AluJo SINE Alu -15 297 1 843 264 0 46 chrX 5037503 5037613 -171936527 - L1M3a LINE L1 -4894 2671 2558 * 6030 151 13 10 chrX 5037608 5038705 -171935435 - L1MA4 LINE L1 -4 6296 5197 1211 162 8 32 chrX 5038813 5039066 -171935074 - L1 LINE L1 -773 5577 5331 381 176 0 47 chrX 5039048 5039133 -171935007 - L1M1 LINE L1 -4564 1749 1669 * 2728 214 48 94 chrX 5039175 5039809 -171934331 - L1M1 LINE L1 -4026 2356 1695 797 192 0 0 chrX 5039809 5039934 -171934206 - FLAM_A SINE Alu -8 125 1 2728 214 48 94 chrX 5039934 5040562 -171933578 - L1M1 LINE L1 -4687 1695 1040 1048 106 12 6 chrX 5040562 5040732 -171933408 + (TTTC)n Simple_repeat Simple_repeat 1 171 0 2728 214 48 94 chrX 5040732 5040806 -171933334 - L1M1 LINE L1 -5342 1040 964 1731 182 30 3 chrX 5040806 5041108 -171933032 - AluJb SINE Alu -2 310 1 2728 214 48 94 chrX 5041108 5041388 -171932752 - L1M1 LINE L1 -5418 964 1152 1921 156 0 28 chrX 5041388 5041709 -171932431 - AluSx SINE Alu 0 312 1 2728 214 48 94 chrX 5041709 5041829 -171932311 - L1M1 LINE L1 -5229 1153 1029 1043 300 117 18 chrX 5041873 5042608 -171931532 - L1M1 LINE L1 -5141 1162 530 2154 261 104 15 chrX 5042611 5043293 -171930847 - L1M3a LINE L1 -5212 2274 1532 199 330 130 20 chrX 5044251 5044351 -171929789 + L2 LINE L2 3162 3272 0 1120 213 88 37 chrX 5045221 5045494 -171928646 - MER58B DNA MER1_type -53 288 2 2007 175 39 11 chrX 5046189 5046544 -171927596 - MLT1A1 LTR MaLR 0 365 1 2093 174 69 16 chrX 5048365 5048797 -171925343 + L1M4 LINE L1 5255 5709 -475 914 97 48 23 chrX 5048804 5048995 -171925145 - MER4D LTR ERV1 -507 365 62 * 970 107 47 0 chrX 5048981 5049130 -171925010 - MER49 LTR ERV1 -629 294 139 1666 114 0 25 chrX 5049317 5049553 -171924587 + MER30 DNA MER1_type 1 230 0 523 305 52 14 chrX 5049911 5049950 -171924190 - MIR SINE MIR -43 219 183 1919 139 133 52 chrX 5049950 5050218 -171923922 + LTR54B LTR ERV1 1 246 -252 1959 155 3 3 chrX 5050218 5050521 -171923619 - AluJo SINE Alu -8 304 2 1919 139 133 52 chrX 5050521 5050712 -171923428 + LTR54B LTR ERV1 246 497 -1 523 305 52 14 chrX 5050712 5050882 -171923258 - MIR SINE MIR -79 183 2 2236 123 0 0 chrX 5051491 5051799 -171922341 + AluSx SINE Alu 1 308 -4 234 373 102 8 chrX 5052095 5052213 -171921927 + MER91A DNA MER1_type 21 149 -47 1706 175 125 0 chrX 5053175 5053478 -171920662 + MER58B DNA MER1_type 1 341 0 277 285 122 47 chrX 5053479 5053693 -171920447 + MLT1K LTR MaLR 69 298 -290 4779 183 55 9 chrX 5053866 5055546 -171918594 - L1MB2 LINE L1 0 6235 4156 198 0 0 0 chrX 5055546 5055568 -171918572 + (TG)n Simple_repeat Simple_repeat 1 22 0 4779 183 55 9 chrX 5055568 5056028 -171918112 - L1MB2 LINE L1 -2079 4156 3719 26457 153 16 21 chrX 5056034 5062148 -171911992 + L1PA10 LINE L1 271 6449 -34 1524 153 16 4 chrX 5062148 5062396 -171911744 - Tigger1 DNA MER2_type -89 2329 2079 2376 236 38 39 chrX 5062414 5063320 -171910820 - L1MB2 LINE L1 -4516 1625 606 404 334 16 52 chrX 5063513 5063897 -171910243 - L1MB2 LINE L1 -5523 608 4 1807 130 18 0 chrX 5063927 5064211 -171909929 - L1MC3 LINE L1 -18 7767 7479 382 308 25 13 chrX 5064316 5064475 -171909665 - MIR3 SINE MIR -40 168 8 5519 84 6 4 chrX 5064648 5065361 -171908779 - L1PB1 LINE L1 0 6151 5438 2439 104 0 0 chrX 5065374 5065681 -171908459 - AluSg SINE Alu -3 307 1 216 97 0 0 chrX 5065801 5065832 -171908308 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 274 246 0 0 chrX 5065856 5065917 -171908223 - L2 LINE L2 -3 3310 3250 1275 175 0 44 chrX 5066896 5067125 -171907015 + MER58A DNA MER1_type 2 220 -4 3533 152 19 21 chrX 5067357 5067806 -171906334 + MER45B DNA AcHobo 421 870 -711 2291 101 0 0 chrX 5067806 5068094 -171906046 + AluSc SINE Alu 1 288 -21 3533 152 19 21 chrX 5068094 5068263 -171905877 + MER45B DNA AcHobo 870 1038 -2 2330 102 3 0 chrX 5068643 5068947 -171905193 - AluSp SINE Alu -8 305 1 441 282 16 8 chrX 5071431 5071555 -171902585 + MER94 DNA DNA 8 132 -2 248 241 11 64 chrX 5071563 5071750 -171902390 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 310 308 0 32 chrX 5071847 5072003 -171902137 + CT-rich Low_complexity Low_complexity 2 152 0 573 204 219 0 chrX 5072234 5072371 -171901769 + MER5B DNA MER1_type 11 177 -1 227 53 0 26 chrX 5074359 5074397 -171899743 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 2890 162 5 43 chrX 5074402 5075026 -171899114 + L1MB4 LINE L1 5558 6157 -23 236 189 0 0 chrX 5075396 5075449 -171898691 + (TA)n Simple_repeat Simple_repeat 1 53 0 233 50 0 50 chrX 5077293 5077333 -171896807 + (TTTCC)n Simple_repeat Simple_repeat 2 39 0 320 242 30 20 chrX 5077911 5078010 -171896130 - MER5A DNA MER1_type -2 187 88 553 162 29 108 chrX 5078085 5078289 -171895851 + MER53 DNA DNA 1 188 -1 199 277 0 0 chrX 5078339 5078386 -171895754 + MER5A DNA MER1_type 29 75 -114 415 235 106 59 chrX 5078450 5078620 -171895520 + MER5B DNA MER1_type 1 178 0 32 0 0 0 chrX 5078637 5078669 -171895471 + AT_rich Low_complexity Low_complexity 1 32 0 862 175 34 34 chrX 5078735 5078912 -171895228 + MER5A DNA MER1_type 13 189 0 408 247 170 46 chrX 5078915 5079109 -171895031 + MIR SINE MIR 34 251 -11 431 243 22 20 chrX 5079859 5079988 -171894152 + MIR SINE MIR 20 143 -66 845 187 144 0 chrX 5080005 5080192 -171893948 + MER20 DNA MER1_type 6 219 0 318 323 31 0 chrX 5080192 5080288 -171893852 + MIR SINE MIR 158 256 -6 392 235 228 7 chrX 5080375 5080524 -171893616 + MIR SINE MIR 50 231 -31 327 296 136 8 chrX 5080661 5080793 -171893347 - MIR SINE MIR -109 153 5 222 333 101 0 chrX 5082575 5082674 -171891466 + L2 LINE L2 3164 3272 0 266 300 56 11 chrX 5082771 5082861 -171891279 - MIR SINE MIR -12 250 157 403 221 115 111 chrX 5082952 5083196 -171890944 + L1ME4a LINE L1 5871 6115 -6 519 243 88 21 chrX 5083288 5083616 -171890524 + L1MC4a LINE L1 5475 5943 -1865 390 318 35 29 chrX 5083632 5083802 -171890338 + MIR SINE MIR 21 191 -71 468 242 0 0 chrX 5083847 5083942 -171890198 - L2 LINE L2 -1 3312 3218 856 170 18 18 chrX 5084016 5084187 -171889953 + MSTD LTR MaLR 5 175 -221 203 226 147 20 chrX 5084353 5084455 -171889685 - L2 LINE L2 0 3313 3199 484 326 14 0 chrX 5085260 5085293 -171888847 + MIR3 SINE MIR 42 73 -135 957 215 51 9 chrX 5085293 5085507 -171888633 - MER58A DNA MER1_type -1 223 1 484 326 14 0 chrX 5085507 5085620 -171888520 + MIR3 SINE MIR 73 190 -18 241 194 0 75 chrX 5086846 5086913 -171887227 + CT-rich Low_complexity Low_complexity 3 64 0 619 247 146 0 chrX 5087993 5088151 -171885989 - MER5A DNA MER1_type 0 189 9 1669 121 8 8 chrX 5088465 5088704 -171885436 - AluSg SINE Alu -13 297 59 870 151 7 0 chrX 5089312 5089451 -171884689 + MER58B DNA MER1_type 202 341 0 23 33 0 0 chrX 5090520 5090550 -171883590 + AT_rich Low_complexity Low_complexity 1 30 0 473 263 15 0 chrX 5091150 5091287 -171882853 + L2 LINE L2 2295 2433 -881 1293 200 29 6 chrX 5091470 5091785 -171882355 + MER33 DNA MER1_type 2 323 -1 202 233 23 0 chrX 5091922 5091965 -171882175 + L2 LINE L2 3265 3308 -5 211 301 178 0 chrX 5091990 5092063 -171882077 + MIR3 SINE MIR 98 183 -25 2098 132 69 65 chrX 5092192 5092421 -171881719 + Tigger2a DNA MER2_type 1 234 -2474 2383 80 0 6 chrX 5092421 5092733 -171881407 - AluY SINE Alu -1 310 1 2098 132 69 65 chrX 5092733 5092935 -171881205 + Tigger2a DNA MER2_type 234 434 0 207 146 0 0 chrX 5094035 5094076 -171880064 + (TTTTC)n Simple_repeat Simple_repeat 5 45 0 1834 159 18 11 chrX 5094593 5094876 -171879264 + AluJb SINE Alu 1 285 -27 983 145 6 0 chrX 5094876 5095048 -171879092 + (TA)n Simple_repeat Simple_repeat 1 173 0 346 327 99 12 chrX 5095535 5095697 -171878443 - MIR SINE MIR -51 211 36 1566 162 7 33 chrX 5095797 5096100 -171878040 - AluJo SINE Alu -17 295 1 32376 37 4 2 chrX 5096923 5101858 -171872282 - L1PA4 LINE L1 0 6155 1209 1998 134 10 13 chrX 5104842 5105155 -171868985 + AluSx SINE Alu 1 312 0 199 325 78 0 chrX 5109159 5109236 -171864904 + L3 LINE CR1 1483 1565 -12 948 217 54 5 chrX 5110293 5110496 -171863644 - MER58A DNA MER1_type -1 223 11 427 263 91 20 chrX 5110484 5110682 -171863458 + LTR16C LTR ERVL 256 467 -24 * 197 33 33 0 chrX 5110683 5110713 -171863427 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 1937 142 3 3 chrX 5111397 5111685 -171862455 - AluJb SINE Alu -24 288 1 251 220 0 0 chrX 5112227 5112286 -171861854 + MLT1I LTR MaLR 85 143 -266 333 263 35 26 chrX 5112359 5112473 -171861667 + MLT1I LTR MaLR 260 374 -35 351 293 43 9 chrX 5112609 5112725 -171861415 + MIR SINE MIR 3 122 -140 2821 234 66 5 chrX 5113832 5115077 -171859063 + L1ME1 LINE L1 4841 6160 -6 182 36 0 36 chrX 5115443 5115471 -171858669 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 402 203 203 15 chrX 5115649 5115782 -171858358 + MLT1H LTR MaLR 96 253 -296 253 288 184 0 chrX 5115862 5115987 -171858153 + MLT1H LTR MaLR 398 545 -4 1683 245 96 21 chrX 5116008 5116531 -171857609 - MER68 LTR ERV1 0 562 1 638 231 55 28 chrX 5116774 5116956 -171857184 + MIR SINE MIR 54 240 -22 370 208 189 19 chrX 5117907 5118013 -171856127 + MER63 DNA MER1_type 1 750 -312 292 188 12 12 chrX 5118077 5118157 -171855983 + GA-rich Low_complexity Low_complexity 4 83 0 255 271 123 25 chrX 5118175 5118297 -171855843 - MIR SINE MIR -6 256 123 1609 101 5 0 chrX 5118298 5118506 -171855634 + AluSp SINE Alu 1 209 -104 337 178 44 11 chrX 5119196 5119286 -171854854 - L1MD2 LINE L1 -2 6357 6265 271 203 68 0 chrX 5119291 5119365 -171854775 - L1MD3 LINE L1 -121 7874 7796 300 91 0 0 chrX 5122627 5122671 -171851469 + (CA)n Simple_repeat Simple_repeat 1 44 0 566 277 142 35 chrX 5123171 5123463 -171850677 - L2 LINE L2 -257 3056 2744 183 156 0 0 chrX 5123496 5123528 -171850612 + T-rich Low_complexity Low_complexity 1 32 0 272 303 88 72 chrX 5123666 5124121 -171850019 + MLT1J LTR MaLR 1 462 -49 1715 184 0 3 chrX 5124380 5124686 -171849454 - AluJb SINE Alu 0 305 1 262 313 20 61 chrX 5125000 5125147 -171848993 - MIR SINE MIR -50 212 72 24 0 0 0 chrX 5126081 5126105 -171848035 + AT_rich Low_complexity Low_complexity 1 24 0 960 226 18 18 chrX 5126979 5127196 -171846944 + MER20 DNA MER1_type 3 219 0 1653 151 42 33 chrX 5127569 5127900 -171846240 - THE1B LTR MaLR 0 364 31 469 277 67 25 chrX 5128017 5128255 -171845885 - MER112 DNA MER1_type -12 248 1 553 258 71 54 chrX 5128677 5128917 -171845223 + MIR SINE MIR 19 262 0 711 219 144 0 chrX 5129072 5129232 -171844908 - MER5A DNA MER1_type -6 183 1 2197 141 60 29 chrX 5129462 5129844 -171844296 + MSTD LTR MaLR 1 394 -2 771 231 87 28 chrX 5130832 5131118 -171843022 + MER33 DNA MER1_type 4 306 -18 3559 194 11 7 chrX 5131137 5131886 -171842254 - L1MB7 LINE L1 -16 6168 5417 596 188 8 0 chrX 5132225 5132342 -171841798 + MER94 DNA DNA 16 133 -1 357 288 37 85 chrX 5133805 5134087 -171840053 + LTR16A1 LTR ERVL 185 468 -23 765 191 56 0 chrX 5134109 5134287 -171839853 - MER53 DNA DNA 0 189 2 246 332 73 41 chrX 5134298 5134454 -171839686 - MIR SINE MIR -65 143 21 202 337 79 11 chrX 5134874 5134963 -171839177 + MIR SINE MIR 1 95 -167 1839 246 32 14 chrX 5134974 5135478 -171838662 - LTR40a LTR ERVL -1 518 6 251 241 52 0 chrX 5135483 5135541 -171838599 + MIR SINE MIR 113 173 -89 219 322 0 0 chrX 5135697 5135756 -171838384 - L2 LINE L2 -5 3308 3250 190 259 185 44 chrX 5135764 5135899 -171838241 + MIR SINE MIR 39 192 -70 244 217 43 29 chrX 5136710 5136779 -171837361 + HAL1b LINE L1 415 484 -864 214 194 28 0 chrX 5136925 5136997 -171837143 + GA-rich Low_complexity Low_complexity 2 75 0 201 39 0 0 chrX 5137034 5137060 -171837080 + (TG)n Simple_repeat Simple_repeat 2 27 0 488 164 107 0 chrX 5137552 5137674 -171836466 + L1MA4 LINE L1 6166 6300 0 24 32 0 0 chrX 5137746 5137777 -171836363 + AT_rich Low_complexity Low_complexity 1 31 0 495 305 147 29 chrX 5138020 5138087 -171836053 + L1M4 LINE L1 3230 3288 -2858 2054 134 3 0 chrX 5138087 5138385 -171835755 + AluSx SINE Alu 1 299 -13 495 305 147 29 chrX 5138385 5138773 -171835367 + L1M4 LINE L1 3288 3739 -2407 229 276 15 45 chrX 5138781 5138915 -171835225 + L1M4 LINE L1 3910 4039 -2107 486 310 62 48 chrX 5139129 5139533 -171834607 + L1M4 LINE L1 4292 4702 -1444 256 271 25 17 chrX 5139748 5139866 -171834274 + MLT1L LTR MaLR 147 265 -350 205 354 34 72 chrX 5140327 5140590 -171833550 + L2 LINE L2 2838 3090 -182 816 128 0 0 chrX 5141501 5141610 -171832530 + FLAM_C SINE Alu 11 119 -24 1514 283 38 17 chrX 5141615 5142085 -171832055 + MLT1E LTR MaLR 114 593 0 574 295 51 30 chrX 5142095 5142329 -171831811 - L2 LINE L2 -173 3140 2902 207 250 0 0 chrX 5142935 5142975 -171831165 + L2 LINE L2 3218 3257 -15 289 354 63 8 chrX 5143175 5143302 -171830838 + L2 LINE L2 3139 3272 0 300 301 82 27 chrX 5143846 5143992 -171830148 - L2 LINE L2 0 3313 3160 1088 191 77 111 chrX 5144289 5144667 -171829473 - MLT1A1 LTR MaLR 0 365 1 610 261 18 125 chrX 5145178 5145722 -171828418 + HAL1 LINE L1 526 1011 -1496 * 718 303 110 42 chrX 5145717 5146221 -171827919 + HAL1 LINE L1 1672 2249 -258 2239 48 0 7 chrX 5146221 5146494 -171827646 + AluY SINE Alu 41 311 0 718 303 110 42 chrX 5146494 5146772 -171827368 + HAL1 LINE L1 2249 2507 0 709 239 78 29 chrX 5147289 5147494 -171826646 - MIR SINE MIR 0 262 48 1050 166 52 14 chrX 5148623 5148834 -171825306 - MER20 DNA MER1_type 0 219 1 314 219 238 9 chrX 5149783 5149888 -171824252 + MER5A DNA MER1_type 61 189 0 220 229 0 0 chrX 5150399 5150447 -171823693 + T-rich Low_complexity Low_complexity 1 48 0 403 101 0 76 chrX 5151114 5151222 -171822918 - AluSg/x SINE Alu 0 309 216 239 293 13 93 chrX 5151794 5151944 -171822196 - MIR SINE MIR -6 256 119 1942 155 0 13 chrX 5152606 5152916 -171821224 - AluJo SINE Alu -6 306 1 712 290 178 55 chrX 5153943 5154757 -171819383 - L2 LINE L2 -571 2743 1830 1284 206 35 14 chrX 5154765 5155109 -171819031 - Charlie1 DNA MER1_type 0 2761 2411 200 371 67 0 chrX 5155187 5155276 -171818864 - L2 LINE L2 -1826 1488 1394 2490 84 0 3 chrX 5155734 5156045 -171818095 + AluSg SINE Alu 1 310 0 701 150 8 0 chrX 5156425 5156558 -171817582 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 254 286 91 38 chrX 5158042 5158252 -171815888 + L2 LINE L2 2140 2360 -954 257 239 22 22 chrX 5159347 5159481 -171814659 + GA-rich Low_complexity Low_complexity 3 136 0 23 33 0 0 chrX 5159929 5159959 -171814181 + AT_rich Low_complexity Low_complexity 1 30 0 201 261 108 63 chrX 5160665 5160776 -171813364 + MIR SINE MIR 2 117 -145 291 299 204 34 chrX 5162008 5162155 -171811985 + MIR SINE MIR 14 185 -77 708 249 12 25 chrX 5162155 5162407 -171811733 - LTR16C LTR ERVL 0 491 202 316 224 93 107 chrX 5163726 5163931 -171810209 + MLT1J LTR MaLR 224 425 -86 * 1579 228 102 7 chrX 5163927 5164379 -171809761 + HsTC2 DNA Tc2 19 513 -1385 1011 177 39 99 chrX 5164376 5164709 -171809431 + HsTC2 DNA Tc2 1269 1757 -141 * 297 209 309 0 chrX 5166264 5166374 -171807766 - MER20 DNA MER1_type -75 144 1 252 267 47 58 chrX 5167038 5167124 -171807016 - MER5B DNA MER1_type -36 142 58 21 0 0 0 chrX 5167217 5167238 -171806902 + AT_rich Low_complexity Low_complexity 1 21 0 231 97 0 0 chrX 5167263 5167294 -171806846 + LTR47A LTR ERVL 1 31 -421 1607 136 101 0 chrX 5167342 5167628 -171806512 + LTR47A LTR ERVL 130 444 -8 930 265 9 9 chrX 5167713 5167932 -171806208 + MER58A DNA MER1_type 2 220 -4 662 332 21 17 chrX 5167982 5168220 -171805920 - MIR SINE MIR -3 259 21 2390 176 73 13 chrX 5168310 5168786 -171805354 + MLT1D LTR MaLR 1 505 0 1088 169 9 65 chrX 5169347 5169578 -171804562 - MER20 DNA MER1_type 0 219 2 990 89 0 0 chrX 5170066 5170201 -171803939 + L1MA2 LINE L1 6170 6304 0 781 219 13 0 chrX 5170419 5170570 -171803570 - MER5B DNA MER1_type 0 178 26 845 263 13 18 chrX 5170576 5170800 -171803340 + MER58A DNA MER1_type 1 223 -1 332 303 93 18 chrX 5171041 5171374 -171802766 + L1MC5 LINE L1 7325 7682 -279 988 284 139 60 chrX 5171903 5172581 -171801559 - L2 LINE L2 -8 3305 2551 1574 152 32 127 chrX 5172581 5172982 -171801158 - MLT1A1 LTR MaLR -2 363 1 988 284 139 60 chrX 5172982 5173152 -171800988 - L2 LINE L2 -762 2551 2396 317 281 230 7 chrX 5173180 5173319 -171800821 + L2 LINE L2 2896 3065 -248 300 232 9 18 chrX 5174217 5174329 -171799811 + GA-rich Low_complexity Low_complexity 3 113 0 256 281 16 0 chrX 5174416 5174480 -171799660 + L2 LINE L2 2928 2992 -321 2921 124 18 23 chrX 5175739 5176174 -171797966 + Tigger2a DNA MER2_type 2 434 0 287 353 15 29 chrX 5176302 5176438 -171797702 - L2 LINE L2 -32 3240 3107 360 269 0 13 chrX 5177665 5177743 -171796397 - L2 LINE L2 -45 3268 3192 21 0 0 0 chrX 5178309 5178330 -171795810 + AT_rich Low_complexity Low_complexity 1 21 0 201 156 0 0 chrX 5178889 5178921 -171795219 + (TATG)n Simple_repeat Simple_repeat 2 33 0 592 280 100 18 chrX 5178923 5179312 -171794828 + L1ME4a LINE L1 5585 6005 -116 216 173 13 40 chrX 5180890 5180965 -171793175 + GA-rich Low_complexity Low_complexity 4 76 0 202 194 0 0 chrX 5181317 5181353 -171792787 + L3 LINE CR1 1540 1575 -2 373 113 0 0 chrX 5182319 5182372 -171791768 - MER53 DNA DNA -1 188 136 233 143 0 0 chrX 5182379 5182414 -171791726 - MER53 DNA DNA -154 35 1 591 122 0 0 chrX 5182587 5182677 -171791463 - AluSp/q SINE Alu 0 313 224 23 0 0 0 chrX 5182725 5182748 -171791392 + AT_rich Low_complexity Low_complexity 1 23 0 1754 120 4 29 chrX 5182941 5183216 -171790924 + AluSx SINE Alu 38 305 -7 304 202 228 35 chrX 5183216 5183330 -171790810 - MER3 DNA MER1_type -73 136 1 480 250 122 53 chrX 5183552 5183740 -171790400 + MIR3 SINE MIR 2 202 -6 180 353 168 37 chrX 5185276 5185466 -171788674 + MIR SINE MIR 33 247 -15 3544 145 25 58 chrX 5185574 5185755 -171788385 - L1MA7 LINE L1 0 6291 6106 2147 114 3 3 chrX 5185755 5186053 -171788087 - AluSx SINE Alu -14 298 1 3544 145 25 58 chrX 5186053 5186393 -171787747 - L1MA7 LINE L1 -185 6106 5756 297 0 0 0 chrX 5186393 5186426 -171787714 + (TA)n Simple_repeat Simple_repeat 1 33 0 3544 145 25 58 chrX 5186426 5186610 -171787530 - L1MA7 LINE L1 -535 5756 5607 2424 87 7 7 chrX 5186610 5186920 -171787220 - AluSg SINE Alu 0 310 1 3544 145 25 58 chrX 5186920 5186941 -171787199 - L1MA7 LINE L1 -684 5607 5587 952 211 14 19 chrX 5186981 5187190 -171786950 - L1ME3 LINE L1 -1 6161 5954 1758 184 0 7 chrX 5190712 5191011 -171783129 - AluJb SINE Alu -15 297 1 602 299 45 0 chrX 5191217 5191371 -171782769 + MIR3 SINE MIR 37 197 -11 301 329 50 50 chrX 5191556 5191696 -171782444 - L2 LINE L2 0 3272 3133 895 167 45 81 chrX 5191745 5191967 -171782173 - MER20 DNA MER1_type 0 219 6 555 298 63 21 chrX 5192292 5192530 -171781610 - L2 LINE L2 -3 3310 3063 1208 0 21 0 chrX 5192665 5192807 -171781333 + (CTATG)n Simple_repeat Simple_repeat 3 147 0 378 0 0 0 chrX 5195595 5195637 -171778503 + (CA)n Simple_repeat Simple_repeat 2 43 0 25 65 0 0 chrX 5195648 5195694 -171778446 + AT_rich Low_complexity Low_complexity 1 46 0 189 154 0 0 chrX 5198594 5198633 -171775507 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 322 26 26 chrX 5199147 5199262 -171774878 - L2 LINE L2 0 3272 3158 1103 195 96 54 chrX 5199526 5200067 -171774073 + MLT1E3 LTR MaLR 1 622 -2 233 345 46 0 chrX 5200302 5200389 -171773751 - L2 LINE L2 -41 3231 3141 653 200 18 24 chrX 5200644 5200809 -171773331 + MER96B DNA MER1_type? 244 407 -10 651 241 37 6 chrX 5202822 5202984 -171771156 - MER5B DNA MER1_type -5 173 7 376 203 76 0 chrX 5203249 5203328 -171770812 - MER53 DNA DNA 0 189 105 372 229 72 0 chrX 5203261 5203344 -171770796 + MER53 DNA DNA 23 111 -78 * 256 116 23 0 chrX 5203343 5203386 -171770754 + MER53 DNA DNA 68 111 -78 * 623 124 22 66 chrX 5203383 5203520 -171770620 - MER53 DNA DNA -58 131 1 219 303 66 0 chrX 5203553 5203629 -171770511 - MIR SINE MIR -11 251 171 908 144 0 0 chrX 5204959 5205091 -171769049 - FLAM_C SINE Alu -1 132 1 21 57 0 0 chrX 5205336 5205371 -171768769 + AT_rich Low_complexity Low_complexity 1 35 0 273 365 18 41 chrX 5205478 5205697 -171768443 + L2 LINE L2 2857 3070 -202 43 35 0 0 chrX 5206045 5206102 -171768038 + AT_rich Low_complexity Low_complexity 1 57 0 2198 128 0 0 chrX 5206377 5206683 -171767457 - AluSx SINE Alu -6 306 1 223 175 235 0 chrX 5207075 5207164 -171766976 - MIR SINE MIR -78 130 1 203 297 45 90 chrX 5207530 5207796 -171766344 + L2 LINE L2 2462 2715 -599 197 373 45 0 chrX 5208557 5208667 -171765473 + L2 LINE L2 3141 3255 -17 233 345 42 47 chrX 5208718 5208909 -171765231 + L2 LINE L2 2568 2757 -557 198 315 45 84 chrX 5209043 5209221 -171764919 + L2 LINE L2 2933 3103 -169 182 250 313 0 chrX 5209305 5209369 -171764771 + L2 LINE L2 3189 3272 0 218 366 52 0 chrX 5209931 5210065 -171764075 - MIR3 SINE MIR -61 147 7 2008 205 12 2 chrX 5210684 5211088 -171763052 + MER74A LTR ERVL 121 528 -30 7974 38 1 0 chrX 5212030 5213073 -171761067 + L1PA5 LINE L1 5111 6154 0 21 36 0 0 chrX 5213073 5213101 -171761039 + AT_rich Low_complexity Low_complexity 1 28 0 896 199 187 19 chrX 5213282 5213584 -171760556 + MLT1C LTR MaLR 133 461 -6 2346 109 0 6 chrX 5215512 5215824 -171758316 + AluSg SINE Alu 1 310 0 2033 206 74 0 chrX 5217085 5217531 -171756609 + L1MB8 LINE L1 5699 6177 -1 519 227 62 8 chrX 5217853 5217981 -171756159 + MIR SINE MIR 128 262 0 465 214 0 0 chrX 5218421 5218510 -171755630 + MER3 DNA MER1_type 1 89 -120 499 152 22 0 chrX 5218594 5218686 -171755454 - L1MB7 LINE L1 0 6184 6091 970 166 44 6 chrX 5218687 5218868 -171755272 - MLT1A1 LTR MaLR -173 192 5 2985 137 126 9 chrX 5218966 5219499 -171754641 + LTR49 LTR ERV1 1 595 0 2004 131 3 17 chrX 5219800 5220097 -171754043 + AluJb SINE Alu 1 293 -19 407 315 61 30 chrX 5221241 5221438 -171752702 + MIR SINE MIR 60 262 0 792 213 11 44 chrX 5221584 5221767 -171752373 - MER69A DNA AcHobo 0 177 1 309 224 24 35 chrX 5222635 5222720 -171751420 + L1ME3A LINE L1 5415 5498 -676 2535 244 37 18 chrX 5223100 5223777 -171750363 + L1ME3A LINE L1 5476 6165 -5 2287 88 7 0 chrX 5224092 5224386 -171749754 - AluSc SINE Alu -13 296 1 23 0 0 0 chrX 5225127 5225150 -171748990 + AT_rich Low_complexity Low_complexity 1 23 0 471 266 140 63 chrX 5225393 5225806 -171748334 - HAL1b LINE L1 -428 920 476 180 0 0 0 chrX 5226670 5226690 -171747450 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 5227513 5227534 -171746606 + AT_rich Low_complexity Low_complexity 1 21 0 1898 160 10 3 chrX 5227744 5228051 -171746089 + AluJo SINE Alu 1 309 -3 27 0 0 0 chrX 5228109 5228136 -171746004 + AT_rich Low_complexity Low_complexity 1 27 0 257 317 89 24 chrX 5228716 5228892 -171745248 - MIR SINE MIR -57 205 13 27 0 0 0 chrX 5279848 5279875 -171694265 + AT_rich Low_complexity Low_complexity 1 27 0 1008 183 142 0 chrX 5280404 5280623 -171693517 - MIR SINE MIR -11 251 2 432 293 159 0 chrX 5280647 5280804 -171693336 + MER5A DNA MER1_type 1 182 -7 568 190 52 95 chrX 5281150 5281382 -171692758 + L1ME3A LINE L1 5927 6148 -22 697 211 23 12 chrX 5281631 5281802 -171692338 - L1MD3 LINE L1 -29 7966 7794 229 162 0 59 chrX 5281955 5282023 -171692117 - L1MC4 LINE L1 -1339 6703 6640 773 157 0 132 chrX 5282785 5283020 -171691120 - MER20 DNA MER1_type 0 219 16 208 291 55 63 chrX 5283190 5283317 -171690823 - MIR3 SINE MIR -5 203 78 825 279 95 23 chrX 5284301 5284648 -171689492 + MLT1J2 LTR MaLR 39 410 -40 21 0 0 0 chrX 5285212 5285233 -171688907 + AT_rich Low_complexity Low_complexity 1 21 0 1420 160 254 32 chrX 5285415 5285753 -171688387 + MER47B DNA MER2_type 6 418 0 480 275 26 54 chrX 5285942 5286152 -171687988 + MLT1H LTR MaLR 1 247 -302 261 252 78 35 chrX 5286250 5286365 -171687775 + MLT1H LTR MaLR 430 549 0 2586 35 0 16 chrX 5286442 5286757 -171687383 - AluY SINE Alu -1 310 1 768 229 41 0 chrX 5287333 5287503 -171686637 + MER5B DNA MER1_type 1 177 -1 294 246 140 35 chrX 5288192 5288306 -171685834 + L2 LINE L2 2252 2377 -937 337 308 0 0 chrX 5288430 5288521 -171685619 + L2 LINE L2 2395 2485 -829 1336 171 171 23 chrX 5288523 5288868 -171685272 + MSTD LTR MaLR 1 396 0 1262 274 98 19 chrX 5288868 5289292 -171684848 + L2 LINE L2 2485 2954 -359 495 259 0 17 chrX 5289292 5289408 -171684732 + MER81 DNA DNA 1 114 0 1262 274 98 19 chrX 5289408 5289484 -171684656 + L2 LINE L2 2954 3023 -290 208 294 119 8 chrX 5289786 5289912 -171684228 - MIR SINE MIR -74 188 49 554 322 18 0 chrX 5289976 5290147 -171683993 - MIR SINE MIR -19 243 70 716 151 42 17 chrX 5290192 5290311 -171683829 + FLAM_C SINE Alu 1 122 -11 35 0 0 0 chrX 5290319 5290354 -171683786 + AT_rich Low_complexity Low_complexity 1 35 0 813 249 11 0 chrX 5290354 5290535 -171683605 - MER58A DNA MER1_type -41 183 1 23 33 0 0 chrX 5290696 5290726 -171683414 + AT_rich Low_complexity Low_complexity 1 30 0 249 174 70 58 chrX 5290848 5290934 -171683206 + L1MC5 LINE L1 7831 7917 -44 569 352 134 30 chrX 5291468 5292583 -171681557 - L2 LINE L2 -5 3267 2033 190 326 116 0 chrX 5292624 5292710 -171681430 + MIR SINE MIR 129 224 -38 545 275 12 12 chrX 5292806 5292973 -171681167 + MLT1J2 LTR MaLR 2 168 -282 1458 202 18 21 chrX 5292974 5293311 -171680829 - MLT1C LTR MaLR 0 467 132 462 279 80 34 chrX 5293315 5293552 -171680588 + MLT1J2 LTR MaLR 168 415 -35 2110 104 35 0 chrX 5293587 5293925 -171680215 + L1MA4 LINE L1 5945 6294 -6 24 32 0 0 chrX 5293926 5293957 -171680183 + AT_rich Low_complexity Low_complexity 1 31 0 2035 183 7 27 chrX 5294021 5294425 -171679715 - MSTD LTR MaLR 0 396 1 215 328 99 6 chrX 5294625 5294796 -171679344 - L2 LINE L2 -1648 1666 1480 222 311 138 16 chrX 5294871 5295002 -171679138 - MIR SINE MIR -67 141 9 193 302 48 0 chrX 5297375 5297438 -171676702 + L2 LINE L2 2215 2280 -1034 303 352 213 0 chrX 5298216 5298540 -171675600 + L2 LINE L2 2282 2674 -640 306 268 65 29 chrX 5300372 5300510 -171673630 + MIR SINE MIR 39 181 -81 569 318 70 4 chrX 5300565 5300807 -171673333 - MIR SINE MIR -1 261 4 370 298 48 52 chrX 5300884 5301156 -171672984 - LTR16A1 LTR ERVL 0 457 187 447 35 0 0 chrX 5302498 5302555 -171671585 + (CA)n Simple_repeat Simple_repeat 2 58 0 243 0 0 0 chrX 5302554 5302581 -171671559 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 2400 95 0 0 chrX 5303542 5303847 -171670293 - AluSx SINE Alu -7 305 1 329 259 52 30 chrX 5303859 5303994 -171670146 + L1ME4a LINE L1 5949 6086 -35 342 349 18 0 chrX 5304673 5304782 -171669358 + MIR SINE MIR 29 139 -69 818 163 0 22 chrX 5304918 5305053 -171669087 + FLAM_C SINE Alu 2 133 0 1330 161 5 27 chrX 5305291 5305515 -171668625 + MER20 DNA MER1_type 1 219 0 1632 203 19 63 chrX 5306621 5307035 -171667105 - MSTD LTR MaLR 0 396 1 189 0 0 0 chrX 5307070 5307091 -171667049 + (A)n Simple_repeat Simple_repeat 1 21 0 713 286 65 14 chrX 5307443 5307796 -171666344 - MER115 DNA AcHobo 0 693 323 321 231 0 51 chrX 5307922 5308000 -171666140 - MER58B DNA MER1_type 0 341 268 306 0 0 0 chrX 5308473 5308507 -171665633 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1629 183 53 17 chrX 5308509 5308809 -171665331 + AluJo SINE Alu 2 312 0 745 198 0 0 chrX 5309422 5309548 -171664592 + FLAM_C SINE Alu 1 126 -17 1815 189 0 7 chrX 5309565 5309867 -171664273 + AluJo SINE Alu 1 300 -12 380 169 13 0 chrX 5310605 5310682 -171663458 + CT-rich Low_complexity Low_complexity 1 78 0 1986 155 0 3 chrX 5310682 5310986 -171663154 - AluJo SINE Alu -9 303 1 238 281 53 18 chrX 5312157 5312271 -171661869 + MLT1J1 LTR MaLR 21 138 -308 997 199 14 5 chrX 5312337 5312553 -171661587 - MER58B DNA MER1_type -1 340 123 1756 205 6 16 chrX 5312598 5312964 -171661176 + MLT1A1 LTR MaLR 4 365 0 291 282 154 13 chrX 5313001 5313150 -171660990 + MLT1J2 LTR MaLR 281 450 0 2089 84 3 50 chrX 5314165 5314495 -171659645 + AluSp SINE Alu 1 316 0 735 204 26 0 chrX 5314497 5314649 -171659491 - MER58A DNA MER1_type -23 201 46 1037 179 19 5 chrX 5315545 5315752 -171658388 - MER20 DNA MER1_type 0 219 10 243 157 0 59 chrX 5316213 5316264 -171657876 + MIR SINE MIR 206 253 -9 291 308 70 26 chrX 5316297 5316483 -171657657 - MIR SINE MIR -46 216 19 553 245 162 10 chrX 5316634 5316838 -171657302 - MIR SINE MIR -8 254 20 202 233 133 33 chrX 5317556 5317616 -171656524 + L2 LINE L2 3207 3272 0 260 27 27 0 chrX 5318589 5318626 -171655514 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 247 248 99 20 chrX 5318692 5318793 -171655347 - L2 LINE L2 -5 3308 3200 909 122 21 43 chrX 5319173 5319361 -171654779 - MER53 DNA DNA 0 189 6 275 345 62 0 chrX 5319703 5319816 -171654324 + L2 LINE L2 3107 3226 -46 2461 95 32 16 chrX 5320022 5320391 -171653749 + THE1C LTR MaLR 1 375 0 467 234 9 0 chrX 5320521 5320628 -171653512 - MER94 DNA DNA -3 131 24 270 264 12 49 chrX 5320931 5321024 -171653116 - MER5A DNA MER1_type -68 121 21 193 275 0 62 chrX 5320965 5321045 -171653095 + MER5B DNA MER1_type 103 177 -1 * 301 271 100 2 chrX 5321199 5321369 -171652771 - MIR SINE MIR -35 227 1 834 183 0 0 chrX 5321391 5321528 -171652612 + AluJb SINE Alu 138 274 -38 700 11 32 75 chrX 5321528 5321716 -171652424 + (TA)n Simple_repeat Simple_repeat 1 180 0 31 26 0 0 chrX 5321717 5321755 -171652385 + AT_rich Low_complexity Low_complexity 1 38 0 182 338 86 39 chrX 5322619 5322980 -171651160 - L2 LINE L2 -1324 1990 1613 335 331 69 0 chrX 5323156 5323301 -171650839 - MIR SINE MIR -20 242 88 268 325 13 13 chrX 5324309 5324466 -171649674 + MER103 DNA DNA 3 159 -7 345 47 0 0 chrX 5324749 5324792 -171649348 + (TC)n Simple_repeat Simple_repeat 2 44 0 1953 171 0 0 chrX 5324792 5325085 -171649055 - AluJo SINE Alu -19 293 1 30 0 0 0 chrX 5325503 5325533 -171648607 + AT_rich Low_complexity Low_complexity 1 30 0 2415 204 23 18 chrX 5325595 5326109 -171648031 + LTR40a LTR ERVL 1 517 -2 1119 153 0 6 chrX 5326331 5326508 -171647632 + AluJb SINE Alu 133 308 -4 1321 159 0 5 chrX 5328138 5328379 -171645761 + AluJb SINE Alu 85 324 0 968 209 58 5 chrX 5328452 5328658 -171645482 + MER20 DNA MER1_type 1 217 -2 3543 222 22 15 chrX 5328701 5328983 -171645157 + L1ME1 LINE L1 5296 5575 -591 3560 133 13 2 chrX 5328983 5329538 -171644602 - L1PA15 LINE L1 0 6165 5605 3543 222 22 15 chrX 5329538 5330111 -171644029 + L1ME1 LINE L1 5575 6157 -9 24 32 0 0 chrX 5330269 5330300 -171643840 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chrX 5330387 5330415 -171643725 + AT_rich Low_complexity Low_complexity 1 28 0 773 197 0 0 chrX 5330421 5330553 -171643587 - FLAM_C SINE Alu -11 132 1 240 262 24 0 chrX 5330667 5330751 -171643389 - L1ME LINE L1 -277 5844 5759 254 303 31 49 chrX 5330906 5331068 -171643072 + L2 LINE L2 2894 3052 -220 462 264 43 14 chrX 5331928 5332068 -171642072 + MLT1J2 LTR MaLR 21 164 -286 498 237 115 6 chrX 5332110 5332266 -171641874 + L1ME3A LINE L1 5987 6159 -11 2245 107 3 3 chrX 5332392 5332742 -171641398 - AluSp SINE Alu 0 313 3 269 146 0 21 chrX 5332746 5332794 -171641346 + MLT1I LTR MaLR 363 409 0 289 367 73 11 chrX 5332905 5333082 -171641058 + MER5A DNA MER1_type 1 188 -1 1746 195 13 0 chrX 5333219 5333517 -171640623 - AluJb SINE Alu -10 302 1 440 271 31 31 chrX 5333539 5333668 -171640472 + MIR3 SINE MIR 31 159 -49 1041 221 33 0 chrX 5334737 5334950 -171639190 - MER58A DNA MER1_type -4 220 1 344 106 0 0 chrX 5335138 5335185 -171638955 - tRNA-Met-e tRNA tRNA -23 52 6 866 232 76 54 chrX 5336013 5336529 -171637611 + MLT1G1 LTR MaLR 3 588 -2 1047 190 41 41 chrX 5336558 5336779 -171637361 - MER58A DNA MER1_type 0 224 4 200 333 49 12 chrX 5336782 5336863 -171637277 - L2 LINE L2 -349 2964 2881 693 174 56 28 chrX 5336942 5337086 -171637054 + MIR SINE MIR 94 241 -21 194 224 20 20 chrX 5337053 5337102 -171637038 + L2 LINE L2 3213 3261 -11 * 230 200 0 50 chrX 5337482 5337542 -171636598 - MER116 DNA Mariner -23 57 1 21 0 0 0 chrX 5337677 5337698 -171636442 + AT_rich Low_complexity Low_complexity 1 21 0 432 165 58 4 chrX 5339974 5340269 -171633871 - MLT1J LTR MaLR -16 495 59 770 197 101 56 chrX 5340309 5340507 -171633633 + MER58C DNA MER1_type 1 207 -8 24 67 0 0 chrX 5343410 5343455 -171630685 + AT_rich Low_complexity Low_complexity 1 45 0 285 345 5 10 chrX 5344318 5344524 -171629616 - L1MEc LINE L1 -5526 735 531 445 293 87 79 chrX 5344658 5345150 -171628990 - L1MEc LINE L1 -5539 531 36 1012 300 50 65 chrX 5345709 5346233 -171627907 - LTR67 LTR ERVL -2 555 40 200 312 205 39 chrX 5346320 5346388 -171627752 - MIR SINE MIR -6 256 201 210 71 0 0 chrX 5346388 5346416 -171627724 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 200 312 205 39 chrX 5346416 5346552 -171627588 - MIR SINE MIR -61 201 18 21 100 0 0 chrX 5347190 5347260 -171626880 + AT_rich Low_complexity Low_complexity 1 70 0 460 249 208 17 chrX 5347286 5347459 -171626681 + L3b LINE CR1 1354 1559 -24 1025 140 31 79 chrX 5348300 5348529 -171625611 - MER20 DNA MER1_type 0 219 2 226 265 17 88 chrX 5349255 5349436 -171624704 + LTR33A LTR ERVL 356 523 0 1787 197 39 58 chrX 5349521 5349988 -171624152 - MLT1C LTR MaLR 0 467 10 285 219 61 9 chrX 5351309 5351423 -171622717 - L1ME4a LINE L1 0 6121 6002 1702 148 60 76 chrX 5351464 5351883 -171622257 + LTR37A LTR ERV1 4 415 -11 852 170 0 0 chrX 5351970 5352105 -171622035 + AluJo SINE Alu 1 135 -177 24 0 0 0 chrX 5352105 5352129 -171622011 + AT_rich Low_complexity Low_complexity 1 24 0 370 294 114 5 chrX 5352164 5352211 -171621929 - L1ME4a LINE L1 -301 5820 5780 4081 130 8 65 chrX 5352211 5352944 -171621196 + LTR8 LTR ERV1 1 691 0 370 294 114 5 chrX 5352944 5353080 -171621060 - L1ME4a LINE L1 -341 5780 5617 438 20 0 0 chrX 5353315 5353366 -171620774 + (CA)n Simple_repeat Simple_repeat 2 52 0 217 242 23 181 chrX 5354045 5354260 -171619880 + MER5A DNA MER1_type 9 189 0 200 143 57 0 chrX 5355904 5355974 -171618166 + (TA)n Simple_repeat Simple_repeat 1 74 0 1419 233 95 40 chrX 5356810 5357334 -171616806 + MER68 LTR ERV1 3 555 -7 785 124 8 0 chrX 5358722 5358851 -171615289 + (TTCC)n Simple_repeat Simple_repeat 4 133 0 1020 188 16 0 chrX 5359738 5359924 -171614216 + MER5A DNA MER1_type 1 189 0 7828 187 43 19 chrX 5360543 5363696 -171610444 - L1MC1 LINE L1 -2 6331 3110 426 326 42 14 chrX 5364172 5364316 -171609824 - MIR SINE MIR -27 235 88 323 296 88 8 chrX 5364412 5364537 -171609603 - MIR SINE MIR -122 140 6 205 313 0 0 chrX 5364793 5364860 -171609280 + (CATA)n Simple_repeat Simple_repeat 2 68 0 569 218 9 109 chrX 5364865 5365076 -171609064 + MER112 DNA MER1_type 65 254 -6 37 62 0 0 chrX 5366204 5366269 -171607871 + AT_rich Low_complexity Low_complexity 1 65 0 197 286 93 57 chrX 5367155 5367295 -171606845 + MER5B DNA MER1_type 33 177 -1 3699 79 6 24 chrX 5367457 5368003 -171606137 - L1MA2 LINE L1 0 6304 5769 365 307 31 8 chrX 5369503 5369630 -171604510 - MIR SINE MIR -120 142 13 195 69 0 0 chrX 5370015 5370044 -171604096 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 975 286 111 49 chrX 5370414 5370789 -171603351 + MLT1K LTR MaLR 23 440 -148 965 215 6 0 chrX 5370789 5370966 -171603174 + MER45A DNA AcHobo 1 178 0 975 286 111 49 chrX 5370966 5371104 -171603036 + MLT1K LTR MaLR 440 568 -20 761 318 184 27 chrX 5371109 5371718 -171602422 - L3 LINE CR1 -13 1564 827 914 248 13 22 chrX 5371718 5371944 -171602196 + MER58A DNA MER1_type 1 224 0 761 318 184 27 chrX 5371944 5372041 -171602099 - L3 LINE CR1 -750 827 747 791 183 74 45 chrX 5372265 5372467 -171601673 + MER3 DNA MER1_type 2 209 0 244 311 54 0 chrX 5373099 5373173 -171600967 + L2 LINE L2 2215 2292 -1022 1180 258 67 39 chrX 5373175 5373699 -171600441 + MLT1H LTR MaLR 8 588 -2 409 239 35 35 chrX 5373901 5374014 -171600126 + L2 LINE L2 3160 3272 0 2064 191 0 3 chrX 5374263 5374629 -171599511 - MLT1A1 LTR MaLR 0 365 1 490 268 24 8 chrX 5374796 5374919 -171599221 + L2 LINE L2 3188 3312 -1 353 269 21 35 chrX 5375268 5375409 -171598731 - L1MC5 LINE L1 -34 7927 7789 504 198 10 30 chrX 5376336 5376437 -171597703 + MER5B DNA MER1_type 13 111 -67 810 212 61 40 chrX 5376442 5376640 -171597500 - MER63A DNA MER1_type -6 204 3 384 208 0 0 chrX 5376642 5376714 -171597426 + MER5B DNA MER1_type 104 175 -3 872 196 87 6 chrX 5376726 5376790 -171597350 - MER5A DNA MER1_type 0 189 132 2056 122 24 0 chrX 5376790 5377086 -171597054 + AluSq SINE Alu 1 303 -10 872 196 87 6 chrX 5377086 5377194 -171596946 - MER5A DNA MER1_type -57 132 3 201 286 124 38 chrX 5377486 5377591 -171596549 - L2 LINE L2 -20 3293 3180 332 209 418 8 chrX 5377836 5377970 -171596170 + MER5A DNA MER1_type 1 189 0 1766 186 73 6 chrX 5378212 5378529 -171595611 + MER58B DNA MER1_type 2 339 -2 267 185 139 74 chrX 5379823 5379931 -171594209 - MLT1E3 LTR MaLR -292 332 214 1013 143 6 6 chrX 5379958 5380119 -171594021 + MER5A DNA MER1_type 4 164 -25 1250 67 93 72 chrX 5380265 5380458 -171593682 + MER107 DNA MER1_type 1 197 0 910 245 130 66 chrX 5382185 5382909 -171591231 + HsTC2a DNA Tc2 3 634 -1261 1063 235 14 27 chrX 5382909 5383130 -171591010 - MER58A DNA MER1_type -2 222 5 910 245 130 66 chrX 5383130 5383239 -171590901 + HsTC2a DNA Tc2 634 735 -4 2489 66 0 0 chrX 5383680 5383981 -171590159 + AluY SINE Alu 2 302 -9 469 284 46 35 chrX 5384257 5384454 -171589686 - MLT1J2 LTR MaLR -2 448 250 1029 194 10 20 chrX 5384457 5384658 -171589482 - MER20 DNA MER1_type -3 216 18 23067 33 1 3 chrX 5385168 5388558 -171585582 + L1PA4 LINE L1 2769 6155 0 33 0 0 0 chrX 5388570 5388603 -171585537 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chrX 5389115 5389141 -171584999 + (T)n Simple_repeat Simple_repeat 1 26 0 212 128 51 0 chrX 5389217 5389256 -171584884 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 672 210 95 91 chrX 5390928 5391145 -171582995 + MIR SINE MIR 1 221 -41 1990 153 0 0 chrX 5391145 5391440 -171582700 + AluSx SINE Alu 1 295 -17 672 210 95 91 chrX 5391440 5391474 -171582666 + MIR SINE MIR 221 253 -9 285 146 0 0 chrX 5391495 5391543 -171582597 + (CAG)n Simple_repeat Simple_repeat 1 48 0 211 224 0 0 chrX 5391643 5391692 -171582448 + (TAA)n Simple_repeat Simple_repeat 2 50 0 369 93 0 0 chrX 5392481 5392535 -171581605 + (CA)n Simple_repeat Simple_repeat 2 55 0 436 243 62 14 chrX 5393191 5393335 -171580805 + MLT1J1 LTR MaLR 1 151 -295 290 191 90 56 chrX 5393441 5393530 -171580610 + MLT1J1 LTR MaLR 349 440 -6 339 253 44 0 chrX 5393750 5393841 -171580299 + L1ME3A LINE L1 5620 5714 -456 754 210 185 20 chrX 5393844 5394165 -171579975 + L1ME3A LINE L1 5750 6122 -42 321 203 0 0 chrX 5395499 5395558 -171578582 - MER112 DNA MER1_type -183 77 19 992 241 84 125 chrX 5396200 5396360 -171577780 + MLT1L LTR MaLR 15 180 -435 369 294 119 30 chrX 5396360 5396561 -171577579 - MER20 DNA MER1_type 0 219 1 992 241 84 125 chrX 5396561 5396572 -171577568 + MLT1L LTR MaLR 180 190 -425 1253 184 4 43 chrX 5396572 5396805 -171577335 - MER58A DNA MER1_type 0 224 1 992 241 84 125 chrX 5396805 5397249 -171576891 + MLT1L LTR MaLR 190 606 -9 514 250 69 132 chrX 5397436 5397832 -171576308 + MLT1L LTR MaLR 37 506 -109 1613 189 94 3 chrX 5398538 5398845 -171575295 - MER58B DNA MER1_type -3 338 4 2765 13 0 10 chrX 5399375 5399680 -171574460 + AluYb8 SINE Alu 8 309 -9 435 236 31 50 chrX 5400150 5400311 -171573829 - L1MC4a LINE L1 -1858 5950 5793 407 260 141 7 chrX 5400704 5400879 -171573261 + L1ME4a LINE L1 5662 5853 -268 21 0 0 0 chrX 5401191 5401212 -171572928 + AT_rich Low_complexity Low_complexity 1 21 0 308 215 11 43 chrX 5401394 5401487 -171572653 - L1MC4a LINE L1 -1911 5897 5808 874 100 0 8 chrX 5401773 5401893 -171572247 - Tigger1 DNA MER2_type -1017 1401 1283 268 250 0 0 chrX 5401914 5401986 -171572154 - L1ME4a LINE L1 -3 6118 6047 16558 112 19 17 chrX 5402420 5403367 -171570773 - Tigger1 DNA MER2_type 0 2418 1474 841 108 0 0 chrX 5403367 5403478 -171570662 - HY1 scRNA scRNA -1 111 1 16558 112 19 17 chrX 5403478 5404942 -171569198 - Tigger1 DNA MER2_type -944 1474 2 507 243 51 36 chrX 5405273 5405470 -171568670 - MLT1H LTR MaLR -240 189 1 648 313 78 4 chrX 5405522 5405790 -171568350 + MLT1J1 LTR MaLR 51 338 -108 307 347 52 47 chrX 5405896 5406109 -171568031 - L2 LINE L2 -195 3077 2864 195 186 0 0 chrX 5406109 5406152 -171567988 + (TG)n Simple_repeat Simple_repeat 2 44 0 2465 77 0 7 chrX 5406212 5406522 -171567618 - AluY SINE Alu -3 308 1 768 166 108 0 chrX 5406862 5407001 -171567139 - MER58B DNA MER1_type -21 320 167 189 26 79 0 chrX 5407806 5407844 -171566296 + (TA)n Simple_repeat Simple_repeat 1 41 0 1836 167 93 0 chrX 5409056 5409368 -171564772 - MER58B DNA MER1_type 0 341 1 22 70 0 0 chrX 5413909 5413952 -171560188 + GC_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chrX 5414778 5414798 -171559342 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1131 247 21 132 chrX 5415613 5415666 -171558474 + L2 LINE L2 2644 2701 -612 402 21 0 0 chrX 5415666 5415713 -171558427 + (TG)n Simple_repeat Simple_repeat 2 48 0 1131 247 21 132 chrX 5415713 5416420 -171557720 + L2 LINE L2 2701 3313 0 188 161 0 0 chrX 5417407 5417438 -171556702 + MIR3 SINE MIR 155 185 -23 339 215 0 0 chrX 5417595 5417660 -171556480 + MIR SINE MIR 87 151 -111 1104 270 95 48 chrX 5418168 5418980 -171555160 - L2 LINE L2 0 3313 2455 981 181 0 0 chrX 5419015 5419181 -171554959 + FRAM SINE Alu 1 166 -10 825 169 0 0 chrX 5419233 5419394 -171554746 + FLAM_C SINE Alu 2 162 0 2832 273 89 32 chrX 5419416 5420546 -171553594 + L2 LINE L2 1465 2659 -655 270 285 16 57 chrX 5420698 5420821 -171553319 - MIR SINE MIR -45 217 100 227 387 51 7 chrX 5421026 5421163 -171552977 + MIR3 SINE MIR 19 161 -47 306 295 27 18 chrX 5422010 5422122 -171552018 - L2 LINE L2 0 3313 3201 335 347 67 21 chrX 5422247 5422440 -171551700 + MLT1L LTR MaLR 344 545 -70 297 0 0 0 chrX 5422468 5422501 -171551639 + (TC)n Simple_repeat Simple_repeat 2 34 0 343 276 97 64 chrX 5422761 5422907 -171551233 - MIR SINE MIR -61 147 32 2773 96 27 0 chrX 5423074 5423439 -171550701 + THE1C LTR MaLR 1 375 0 10891 110 37 34 chrX 5423439 5425015 -171549125 + THE1C-int LTR MaLR 1 1580 0 2813 109 5 5 chrX 5425015 5425390 -171548750 + THE1C LTR MaLR 1 375 0 389 325 50 0 chrX 5427707 5427827 -171546313 - L2 LINE L2 0 3272 3147 452 298 159 22 chrX 5428407 5428716 -171545424 - L2 LINE L2 -218 3054 2713 690 223 27 0 chrX 5428859 5429007 -171545133 + MER20 DNA MER1_type 68 219 0 2006 151 13 13 chrX 5429166 5429478 -171544662 + AluSx SINE Alu 1 312 0 662 293 11 0 chrX 5429605 5429779 -171544361 + MER91B DNA MER1_type 2 177 -13 460 219 161 19 chrX 5430029 5430184 -171543956 + MLT1J2 LTR MaLR 41 217 -233 689 310 57 8 chrX 5430418 5430663 -171543477 + MIR SINE MIR 5 261 -1 1605 144 89 10 chrX 5431100 5431483 -171542657 - Charlie1b DNA MER1_type -30 493 81 247 246 0 18 chrX 5431483 5431597 -171542543 + (TTA)n Simple_repeat Simple_repeat 3 114 0 311 243 10 78 chrX 5431602 5431705 -171542435 - Charlie1b DNA MER1_type -427 96 1 515 167 0 0 chrX 5432109 5432193 -171541947 - AluJ/FLAM SINE Alu -228 84 1 300 309 37 25 chrX 5432919 5433081 -171541059 - L3b LINE CR1 -318 1265 1102 457 146 11 11 chrX 5435214 5435303 -171538837 + L1PB2 LINE L1 6056 6144 -7 253 188 47 47 chrX 5435360 5435424 -171538716 - MIR SINE MIR -116 146 83 861 235 10 0 chrX 5435914 5436114 -171538026 + MER105 DNA DNA 1 202 -2 186 43 0 0 chrX 5436316 5436339 -171537801 + (GA)n Simple_repeat Simple_repeat 2 24 0 1381 153 63 0 chrX 5437126 5437348 -171536792 + AluJb SINE Alu 1 236 -76 406 300 47 47 chrX 5438757 5438821 -171535319 - MLT1K LTR MaLR -10 578 515 2064 156 111 32 chrX 5438821 5439017 -171535123 + MLT1D LTR MaLR 1 180 -325 210 37 0 0 chrX 5439017 5439044 -171535096 + (CAGG)n Simple_repeat Simple_repeat 2 28 0 2064 156 111 32 chrX 5439044 5439315 -171534825 + MLT1D LTR MaLR 180 505 0 406 300 47 47 chrX 5439315 5439503 -171534637 - MLT1K LTR MaLR -72 516 326 519 291 90 53 chrX 5439555 5439854 -171534286 - MLT1K LTR MaLR -277 311 2 28 61 0 0 chrX 5439869 5439918 -171534222 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chrX 5439944 5439983 -171534157 + AT_rich Low_complexity Low_complexity 1 39 0 35924 50 3 102 chrX 5440032 5446866 -171527274 - L1PA5 LINE L1 -8 6146 11 227 280 0 54 chrX 5447473 5447566 -171526574 + L2 LINE L2 3184 3271 -1 650 274 52 14 chrX 5448575 5448787 -171525353 + MIR SINE MIR 40 259 -3 1950 183 34 13 chrX 5449178 5449566 -171524574 + MSTD LTR MaLR 1 396 0 241 227 30 45 chrX 5449653 5449785 -171524355 + L1ME4a LINE L1 5987 6116 -5 921 182 34 0 chrX 5449846 5450022 -171524118 + MER58A DNA MER1_type 40 221 -3 611 224 35 7 chrX 5450169 5450312 -171523828 - MIR SINE MIR 0 262 116 243 323 10 40 chrX 5451295 5451394 -171522746 + L3 LINE CR1 1015 1110 -467 322 266 32 32 chrX 5451577 5451701 -171522439 + L1ME4a LINE L1 5932 6055 -66 219 146 0 24 chrX 5451702 5451743 -171522397 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 664 301 47 55 chrX 5451828 5452213 -171521927 + L3 LINE CR1 1101 1482 -95 322 273 154 0 chrX 5453025 5453135 -171521005 + MIR SINE MIR 62 188 -74 1096 202 9 9 chrX 5453322 5453540 -171520600 - MER58A DNA MER1_type -6 218 1 519 263 60 0 chrX 5453550 5453683 -171520457 - MIR SINE MIR -114 148 8 1909 4 8 34 chrX 5454239 5454474 -171519666 - L1PA3 LINE L1 -11 6144 5916 877 208 63 10 chrX 5454646 5454853 -171519287 - MER20 DNA MER1_type -1 218 1 183 129 0 0 chrX 5455176 5455207 -171518933 + (T)n Simple_repeat Simple_repeat 1 31 0 3309 164 20 30 chrX 5455371 5456071 -171518069 + L1MB8 LINE L1 5485 6177 -1 1778 174 3 13 chrX 5456554 5456852 -171517288 - AluJo SINE Alu -11 301 7 442 369 127 14 chrX 5456852 5457269 -171516871 + L3 LINE CR1 553 1016 -561 207 315 19 0 chrX 5457380 5457434 -171516706 - L2 LINE L2 -60 3212 3158 423 339 166 11 chrX 5457549 5457826 -171516314 + L3 LINE CR1 1145 1464 -113 1235 231 72 6 chrX 5457848 5458066 -171516074 - MER58B DNA MER1_type -2079 341 94 1717 181 13 17 chrX 5458066 5458365 -171515775 - AluJo SINE Alu -14 298 1 1235 231 72 6 chrX 5458365 5458466 -171515674 - MER58B DNA MER1_type -2326 94 1 536 356 11 0 chrX 5458670 5458861 -171515279 - MIR SINE MIR -56 206 14 222 222 11 89 chrX 5459101 5459191 -171514949 + MIR SINE MIR 116 198 -64 279 246 15 15 chrX 5459683 5459748 -171514392 + L2 LINE L2 3026 3090 -182 290 306 0 0 chrX 5459948 5460020 -171514120 + MIR3 SINE MIR 120 191 -17 860 292 100 22 chrX 5460158 5460759 -171513381 + L2 LINE L2 2664 3312 -1 197 336 66 25 chrX 5461347 5461469 -171512671 + MIR SINE MIR 124 250 -12 883 232 43 5 chrX 5461621 5461832 -171512308 - MER20 DNA MER1_type 0 219 1 946 241 18 35 chrX 5461931 5462159 -171511981 + MER58A DNA MER1_type 1 224 0 594 273 19 46 chrX 5462159 5462375 -171511765 + MIR SINE MIR 17 226 -36 2844 128 14 2 chrX 5462948 5463371 -171510769 - MSTA LTR MaLR 0 428 1 1415 235 48 42 chrX 5463767 5464275 -171509865 + L1ME3A LINE L1 5266 5775 -395 954 237 67 19 chrX 5464510 5464822 -171509318 + L1ME3A LINE L1 5843 6169 -1 282 271 79 50 chrX 5465102 5465183 -171508957 - MIR3 SINE MIR -62 146 58 1592 177 84 26 chrX 5465183 5465528 -171508612 + MLT1A1 LTR MaLR 1 365 0 282 271 79 50 chrX 5465528 5465586 -171508554 - MIR3 SINE MIR -150 58 3 1465 235 132 41 chrX 5466406 5466946 -171507194 + MLT1E LTR MaLR 3 591 -2 379 300 31 0 chrX 5467273 5467433 -171506707 + MER103 DNA DNA 1 165 -1 357 62 0 0 chrX 5467515 5467563 -171506577 + (CA)n Simple_repeat Simple_repeat 1 48 0 1923 166 11 0 chrX 5467751 5468035 -171506105 - AluJb SINE Alu -21 291 5 24 0 0 0 chrX 5468052 5468076 -171506064 + AT_rich Low_complexity Low_complexity 1 24 0 960 174 0 36 chrX 5468082 5468249 -171505891 - FRAM SINE Alu -23 153 1 23 0 0 0 chrX 5468358 5468381 -171505759 + AT_rich Low_complexity Low_complexity 1 23 0 2763 75 0 17 chrX 5469175 5469536 -171504604 - THE1A LTR MaLR 0 355 1 12071 84 6 1 chrX 5469536 5471109 -171503031 - THE1A-int LTR MaLR 0 1580 1 2665 93 3 0 chrX 5471109 5471463 -171502677 - THE1A LTR MaLR 0 355 1 403 248 0 0 chrX 5473264 5473365 -171500775 + MER94 DNA DNA 2 102 -32 996 211 0 44 chrX 5474707 5474935 -171499205 + MER20 DNA MER1_type 2 219 0 1721 248 62 27 chrX 5475238 5475755 -171498385 + MLT1E LTR MaLR 58 592 -1 180 0 0 0 chrX 5475834 5475854 -171498286 + (GA)n Simple_repeat Simple_repeat 1 20 0 402 21 0 0 chrX 5477242 5477289 -171496851 + (CA)n Simple_repeat Simple_repeat 1 47 0 243 186 0 43 chrX 5477578 5477648 -171496492 + A-rich Low_complexity Low_complexity 3 69 0 1907 138 35 3 chrX 5478198 5478510 -171495630 - L1MC1 LINE L1 -23 6310 5989 234 220 61 45 chrX 5479538 5479670 -171494470 + L1P LINE L1 5255 5388 -763 1088 251 63 25 chrX 5479967 5480286 -171493854 + MER58B DNA MER1_type 1 331 -10 327 298 107 23 chrX 5480297 5480559 -171493581 + L1ME3 LINE L1 5650 5931 -235 189 74 0 0 chrX 5480596 5480623 -171493517 + (TA)n Simple_repeat Simple_repeat 2 28 0 928 188 0 0 chrX 5481384 5481538 -171492602 + FRAM SINE Alu 1 154 -22 265 295 52 69 chrX 5481892 5482065 -171492075 + MIR SINE MIR 8 177 -85 217 358 0 22 chrX 5482240 5482374 -171491766 + GA-rich Low_complexity Low_complexity 4 134 0 216 259 0 0 chrX 5482952 5483033 -171491107 + C-rich Low_complexity Low_complexity 1 81 0 424 292 8 36 chrX 5483114 5483370 -171490770 + CT-rich Low_complexity Low_complexity 1 248 0 1223 293 270 21 chrX 5483753 5485190 -171488950 + L2 LINE L2 1498 3304 -9 2398 204 8 37 chrX 5485652 5486167 -171487973 - MLT1D LTR MaLR 0 505 6 2262 111 3 0 chrX 5486303 5486631 -171487509 + AluSg SINE Alu 1 329 0 2231 106 3 10 chrX 5486849 5487160 -171486980 + AluSg SINE Alu 1 309 -1 221 211 39 0 chrX 5489778 5489830 -171484310 + MIR SINE MIR 196 249 -13 303 281 58 22 chrX 5490112 5490251 -171483889 + L1M4 LINE L1 3371 3514 -2632 875 196 6 39 chrX 5490271 5490450 -171483690 - AluJo SINE Alu -35 277 105 502 278 70 54 chrX 5490514 5490618 -171483522 + L1M4 LINE L1 3875 3976 -2170 213 65 0 0 chrX 5490618 5490649 -171483491 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1732 156 7 4 chrX 5490657 5490926 -171483214 - AluJo SINE Alu -37 275 6 502 278 70 54 chrX 5490926 5491309 -171482831 + L1M4 LINE L1 3982 4379 -1767 777 153 0 0 chrX 5491409 5491533 -171482607 + AluSg/x SINE Alu 181 304 -8 22 0 0 0 chrX 5491576 5491598 -171482542 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 5491978 5491999 -171482141 + AT_rich Low_complexity Low_complexity 1 21 0 3167 123 74 2 chrX 5492536 5493047 -171481093 + MER34C LTR ERV1 35 582 -3 2130 112 8 36 chrX 5493561 5493917 -171480223 + L1PA16 LINE L1 5312 5657 -509 658 88 39 0 chrX 5493949 5494051 -171480089 + MER39B LTR ERV1 90 195 -458 3012 120 37 8 chrX 5494072 5494556 -171479584 + L1PA16 LINE L1 5665 6162 -4 287 323 125 15 chrX 5494558 5494951 -171479189 + L1M4 LINE L1 2329 2764 -3382 1026 166 14 54 chrX 5495062 5495285 -171478855 - MER20 DNA MER1_type -4 215 2 38 61 0 0 chrX 5495319 5495385 -171478755 + AT_rich Low_complexity Low_complexity 1 66 0 1417 228 57 54 chrX 5495543 5496003 -171478137 + LTR48B LTR ERV1 1 461 -183 604 182 91 26 chrX 5496302 5496456 -171477684 + MLT1E1 LTR MaLR 490 653 -1 400 286 63 23 chrX 5497136 5497311 -171476829 + L1MC4a LINE L1 5698 5879 -1929 2128 127 104 12 chrX 5497342 5497884 -171476256 + MER39B LTR ERV1 1 653 0 23 0 0 0 chrX 5497887 5497910 -171476230 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 5497962 5497992 -171476148 + AT_rich Low_complexity Low_complexity 1 30 0 2358 175 47 2 chrX 5498366 5498772 -171475368 - MSTB LTR MaLR -2 424 1 661 150 83 0 chrX 5498883 5499016 -171475124 - L1MA9 LINE L1 -5 6307 6164 633 119 99 0 chrX 5499092 5499193 -171474947 + HY1 scRNA scRNA 1 111 -1 25 65 0 0 chrX 5499193 5499239 -171474901 + AT_rich Low_complexity Low_complexity 1 46 0 241 216 117 53 chrX 5499385 5499556 -171474584 - L2 LINE L2 -85 3228 3047 1224 164 127 55 chrX 5499940 5500294 -171473846 + MER39 LTR ERV1 336 565 0 231 36 0 0 chrX 5500485 5500513 -171473627 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1073 54 11 38 chrX 5500513 5500697 -171473443 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1896 135 0 4 chrX 5500697 5500963 -171473177 - AluSx SINE Alu -47 265 1 27 0 0 0 chrX 5501997 5502024 -171472116 + AT_rich Low_complexity Low_complexity 1 27 0 207 195 24 0 chrX 5502244 5502285 -171471855 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 188 157 0 157 chrX 5502300 5502351 -171471789 + MIR3 SINE MIR 131 173 -35 184 297 47 31 chrX 5502317 5502381 -171471759 + L3b LINE CR1 1519 1583 0 * 811 294 66 28 chrX 5502907 5503301 -171470839 - L1ME3A LINE L1 -222 5948 5540 277 125 31 0 chrX 5503383 5503447 -171470693 + L1M4 LINE L1 3155 3220 -2926 5563 121 24 20 chrX 5503464 5504418 -171469722 - Tigger3b DNA MER2_type 0 1231 274 586 165 0 0 chrX 5504416 5504507 -171469633 - Tigger3b DNA MER2_type -1129 102 12 * 5729 158 25 10 chrX 5504508 5506520 -171467620 + L1PA16 LINE L1 4126 6157 -9 381 266 26 13 chrX 5506568 5506722 -171467418 - L1M4 LINE L1 -3097 3049 2894 237 266 0 0 chrX 5506818 5506961 -171467179 + (TA)n Simple_repeat Simple_repeat 2 144 0 3275 189 132 12 chrX 5506969 5507726 -171466414 + MER21B LTR ERV1 9 862 -1 676 287 11 63 chrX 5508315 5508583 -171465557 + L1MEd LINE L1 338 591 -5528 257 266 147 28 chrX 5508614 5508723 -171465417 + L1MEd LINE L1 540 661 -5458 1612 193 40 6 chrX 5508733 5509060 -171465080 - MER58B DNA MER1_type -2 339 2 180 261 0 46 chrX 5509406 5509471 -171464669 + L2 LINE L2 2999 3060 -212 190 256 23 0 chrX 5510455 5510498 -171463642 + MIR3 SINE MIR 151 194 -14 404 280 46 84 chrX 5510812 5511158 -171462982 + L1ME1 LINE L1 20 662 -6193 283 302 69 31 chrX 5511364 5511523 -171462617 + L1ME1 LINE L1 1029 1193 -5662 3067 230 107 48 chrX 5511606 5513190 -171460950 + L1ME1 LINE L1 1226 2715 -4242 1844 91 116 11 chrX 5513190 5513465 -171460675 + AluYa8 SINE Alu 1 304 -6 3067 230 107 48 chrX 5513465 5514019 -171460121 + L1ME1 LINE L1 2715 3235 -3722 2231 119 3 0 chrX 5514019 5514331 -171459809 - AluSp SINE Alu 0 313 1 3067 230 107 48 chrX 5514331 5514706 -171459434 + L1ME1 LINE L1 3235 3586 -3371 980 233 3 110 chrX 5514706 5515041 -171459099 + AluJb SINE Alu 1 299 -3 3067 230 107 48 chrX 5515041 5515334 -171458806 + L1ME1 LINE L1 3586 4223 -2734 1011 192 64 18 chrX 5515342 5515623 -171458517 + L1ME1 LINE L1 5809 6102 -855 2418 211 32 69 chrX 5515652 5516092 -171458048 + L1ME1 LINE L1 6231 6637 -340 2317 108 6 6 chrX 5516092 5516444 -171457696 + L1PA13 LINE L1 5811 6162 -1 2418 211 32 69 chrX 5516444 5516715 -171457425 + L1ME1 LINE L1 6637 6916 -61 1155 213 20 38 chrX 5517652 5517995 -171456145 - L1MC4 LINE L1 -442 7600 7264 2321 78 3 0 chrX 5520022 5520350 -171453790 + AluSp SINE Alu 1 329 0 449 323 200 61 chrX 5520366 5522288 -171451852 + L2 LINE L2 558 2746 -568 877 185 6 39 chrX 5522330 5522508 -171451632 - MER20 DNA MER1_type -47 172 1 206 264 0 0 chrX 5523993 5524046 -171450094 - MIR SINE MIR -107 155 103 1158 221 19 11 chrX 5524067 5524330 -171449810 + MLT1E1 LTR MaLR 1 265 -389 6961 139 24 3 chrX 5524362 5525709 -171448431 + L1MC1 LINE L1 4964 6331 -2 933 236 138 18 chrX 5525753 5526035 -171448105 + MLT1E3 LTR MaLR 232 624 0 593 337 24 20 chrX 5526845 5527097 -171447043 + L3 LINE CR1 1323 1575 -2 257 281 309 0 chrX 5527820 5527998 -171446142 - L2 LINE L2 -703 2611 2379 1659 232 64 50 chrX 5528010 5528582 -171445558 - MLT1F1 LTR MaLR 0 567 1 798 294 47 60 chrX 5528582 5529031 -171445109 - L2 LINE L2 -934 2380 1938 401 252 11 19 chrX 5529036 5529231 -171444909 + L1ME3A LINE L1 5703 5882 -288 357 239 0 0 chrX 5529615 5529682 -171444458 + MIR SINE MIR 77 143 -65 226 308 0 0 chrX 5529683 5529748 -171444392 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 211 337 11 11 chrX 5529711 5529800 -171444340 + (CATA)n Simple_repeat Simple_repeat 3 91 0 * 531 273 129 39 chrX 5530361 5530647 -171443493 - L2 LINE L2 -6 3307 2996 338 250 51 80 chrX 5530619 5530683 -171443457 - L2 LINE L2 -3119 195 131 * 1878 202 3 6 chrX 5530683 5531049 -171443091 - MLT1A1 LTR MaLR 0 365 1 338 250 51 80 chrX 5531049 5531160 -171442980 - L2 LINE L2 -3183 131 25 214 281 24 12 chrX 5531758 5531840 -171442300 - MIR SINE MIR 0 262 180 207 330 143 9 chrX 5531841 5531953 -171442187 - L2 LINE L2 -5 3267 3141 * 518 253 24 59 chrX 5531945 5532115 -171442025 - MIR3 SINE MIR -29 179 16 404 316 87 48 chrX 5533092 5533298 -171440842 + L3 LINE CR1 407 620 -957 1020 272 69 67 chrX 5533340 5533745 -171440395 + MLT1J2 LTR MaLR 37 442 -8 192 204 0 68 chrX 5533759 5533803 -171440337 - L2 LINE L2 -31 3241 3201 1035 239 27 19 chrX 5533912 5534172 -171439968 + MIR SINE MIR 1 262 0 227 31 31 0 chrX 5534593 5534625 -171439515 + (GA)n Simple_repeat Simple_repeat 2 34 0 865 275 48 13 chrX 5534802 5535118 -171439022 + MER46C DNA MER2_type 3 329 -9 1883 161 30 91 chrX 5535126 5535304 -171438836 + MLT1C LTR MaLR 1 188 -279 2252 106 3 3 chrX 5535304 5535615 -171438525 + AluSq SINE Alu 3 313 0 1883 161 30 91 chrX 5535615 5535933 -171438207 + MLT1C LTR MaLR 188 467 0 259 255 77 57 chrX 5538001 5538208 -171435932 - MLT1L LTR MaLR -24 487 303 307 238 0 48 chrX 5538336 5538420 -171435720 - MLT1J LTR MaLR -333 178 99 180 314 118 0 chrX 5538653 5538704 -171435436 - L2 LINE L2 -255 3017 2961 183 42 0 0 chrX 5539298 5539322 -171434818 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chrX 5540006 5540034 -171434106 + AT_rich Low_complexity Low_complexity 1 28 0 1422 169 0 50 chrX 5541568 5541820 -171432320 + L1M4 LINE L1 3934 4170 -1976 2470 58 7 0 chrX 5541820 5542112 -171432028 + AluSc SINE Alu 1 294 -15 1422 169 0 50 chrX 5542112 5542161 -171431979 + L1M4 LINE L1 4170 4220 -1926 215 351 37 0 chrX 5542277 5542411 -171431729 - MIR SINE MIR -73 189 51 950 156 104 16 chrX 5542471 5542663 -171431477 + MER3 DNA MER1_type 1 209 0 195 354 55 37 chrX 5543064 5543228 -171430912 + L2 LINE L2 2890 3056 -216 1023 218 5 14 chrX 5543329 5543549 -171430591 + MER58A DNA MER1_type 4 221 -3 24 32 0 0 chrX 5543588 5543619 -171430521 + AT_rich Low_complexity Low_complexity 1 31 0 358 238 113 39 chrX 5543790 5543940 -171430200 - MIR SINE MIR -67 141 5 22 80 0 0 chrX 5544104 5544154 -171429986 + AT_rich Low_complexity Low_complexity 1 50 0 985 91 51 23 chrX 5544710 5544886 -171429254 - L1MA9 LINE L1 -2 6310 6130 322 274 0 89 chrX 5545683 5545829 -171428311 + MIR SINE MIR 34 166 -96 704 276 50 50 chrX 5546589 5547060 -171427080 - MLT1G1 LTR MaLR 0 595 1 934 193 6 17 chrX 5548672 5548853 -171425287 + MER5A DNA MER1_type 10 188 -1 215 284 68 27 chrX 5549912 5549986 -171424154 + MER5B DNA MER1_type 99 175 -3 1790 165 32 0 chrX 5550314 5550593 -171423547 + AluSx SINE Alu 1 288 -24 309 26 0 0 chrX 5550594 5550632 -171423508 + (CA)n Simple_repeat Simple_repeat 2 39 0 277 310 85 16 chrX 5550662 5550791 -171423349 - MIR SINE MIR -30 232 95 271 338 25 0 chrX 5551212 5551292 -171422848 + L2 LINE L2 3191 3272 0 488 211 32 0 chrX 5551346 5551441 -171422699 - L2 LINE L2 -1 3312 3215 691 293 18 13 chrX 5552843 5553072 -171421068 - MER46C DNA MER2_type -1 337 108 234 329 52 99 chrX 5553227 5553440 -171420700 - L2 LINE L2 -154 3118 2916 328 248 69 10 chrX 5556190 5556291 -171417849 + MLT1I LTR MaLR 39 145 -264 340 192 0 140 chrX 5556454 5556610 -171417530 + MLT1G1 LTR MaLR 428 504 -1 185 405 47 0 chrX 5556718 5556866 -171417274 + L2 LINE L2 2608 2762 -552 234 143 71 0 chrX 5557308 5557320 -171416820 - MIR SINE MIR -2 260 216 242 67 0 0 chrX 5557320 5557350 -171416790 - L2 LINE L2 -23 3290 3261 22 56 0 0 chrX 5558364 5558400 -171415740 + AT_rich Low_complexity Low_complexity 1 36 0 1138 160 23 23 chrX 5559753 5559972 -171414168 - MER20 DNA MER1_type 0 219 1 222 37 0 0 chrX 5560423 5560450 -171413690 + (TTTTTG)n Simple_repeat Simple_repeat 6 32 0 1042 208 19 14 chrX 5560485 5560701 -171413439 + MER20 DNA MER1_type 1 217 -2 243 79 0 0 chrX 5560997 5561035 -171413105 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 1403 292 56 44 chrX 5562731 5563317 -171410823 + MLT1E LTR MaLR 1 593 0 3686 188 18 5 chrX 5563533 5564267 -171409873 - L1MB5 LINE L1 0 6174 5432 12847 142 12 26 chrX 5564267 5567731 -171406409 - L1MA2 LINE L1 -42 7681 4269 7098 169 12 1 chrX 5567727 5568866 -171405274 - L1MA2 LINE L1 -5713 1852 701 * 1114 175 30 3 chrX 5568859 5569281 -171404859 - L1MA2 LINE L1 -648 6949 13 * 6558 94 19 48 chrX 5569281 5570269 -171403871 + HSMAR2 DNA Mariner 343 1302 0 190 295 84 105 chrX 5570274 5570369 -171403771 - L2 LINE L2 -38 3234 3142 915 287 86 51 chrX 5570441 5571954 -171402186 + L1ME3A LINE L1 58 1657 -4653 413 266 84 58 chrX 5572491 5572837 -171401303 + L1ME3A LINE L1 2313 2667 -3462 760 248 76 14 chrX 5572891 5573101 -171401039 - MER58A DNA MER1_type -1 223 1 366 239 98 43 chrX 5573116 5573279 -171400861 + L1ME3A LINE L1 2788 2959 -3170 445 246 0 9 chrX 5573286 5573396 -171400744 + L1ME3A LINE L1 6062 6170 0 443 269 103 34 chrX 5573410 5573848 -171400292 + L1ME3A LINE L1 2955 3422 -2707 22 35 0 0 chrX 5573854 5573883 -171400257 + AT_rich Low_complexity Low_complexity 1 29 0 839 281 84 5 chrX 5574021 5574621 -171399519 + L1ME3A LINE L1 4982 5629 -516 356 263 45 57 chrX 5574719 5574966 -171399174 + L1ME3A LINE L1 5820 6063 -90 2770 112 16 66 chrX 5575601 5575669 -171398471 + MER4E LTR ERV1 1 71 -695 2539 78 0 0 chrX 5575669 5575978 -171398162 - AluY SINE Alu -2 309 1 2770 112 16 66 chrX 5575978 5576536 -171397604 + MER4E LTR ERV1 71 766 0 271 291 146 46 chrX 5578532 5578683 -171395457 - MIR SINE MIR -13 249 84 2786 137 26 12 chrX 5579462 5579887 -171394253 - MSTB1 LTR MaLR 0 432 2 377 215 271 14 chrX 5580456 5580600 -171393540 - MER5A DNA MER1_type 0 189 9 521 287 118 21 chrX 5581249 5581486 -171392654 - MIR SINE MIR -2 260 1 339 255 0 11 chrX 5581804 5581898 -171392242 - MLT1K LTR MaLR -6 582 490 350 224 75 60 chrX 5582118 5582252 -171391888 + MER104 DNA Tc2 1 136 -44 355 268 49 32 chrX 5582466 5582589 -171391551 - L2 LINE L2 0 3272 3148 496 237 42 17 chrX 5585063 5585181 -171388959 + MIR SINE MIR 1 121 -141 526 103 0 39 chrX 5585181 5585259 -171388881 + LTR32 LTR ERVL 13 87 -384 * 2669 166 29 5 chrX 5585240 5585686 -171388454 + LTR32 LTR ERVL 15 471 0 189 0 0 0 chrX 5586240 5586261 -171387879 + (A)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chrX 5586261 5586284 -171387856 + (CA)n Simple_repeat Simple_repeat 2 24 0 786 129 0 0 chrX 5586790 5586891 -171387249 + FLAM_A SINE Alu 22 122 -20 261 0 0 0 chrX 5587467 5587496 -171386644 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2006 192 6 3 chrX 5587502 5587851 -171386289 - MLT1A1 LTR MaLR -15 350 1 2358 171 47 64 chrX 5588792 5589306 -171384834 + MLT1D LTR MaLR 1 505 0 296 211 33 125 chrX 5589548 5589575 -171384565 - MER5B DNA MER1_type -37 141 113 2087 73 59 4 chrX 5589575 5589870 -171384270 + AluY SINE Alu 1 311 0 296 211 33 125 chrX 5589870 5589994 -171384146 - MER5B DNA MER1_type -65 113 4 215 301 12 12 chrX 5590060 5590143 -171383997 + MIR3 SINE MIR 123 205 -3 949 205 82 45 chrX 5591162 5591430 -171382710 + LTR50 LTR ERVL 1 278 -517 898 212 0 22 chrX 5591492 5591671 -171382469 + MLT1A1 LTR MaLR 1 175 -190 312 244 39 13 chrX 5591709 5591787 -171382353 + MLT1A1 LTR MaLR 167 246 -119 * 585 139 5 9 chrX 5591780 5591877 -171382263 - MLT1A1 LTR MaLR -26 341 253 238 204 0 0 chrX 5591872 5591916 -171382224 + MLT1A1 LTR MaLR 322 365 0 * 568 216 82 69 chrX 5591917 5592148 -171381992 + LTR50 LTR ERVL 526 759 -36 4730 123 44 20 chrX 5594159 5594864 -171379276 + MER72 LTR ERV1 1 722 0 1467 120 113 22 chrX 5595304 5595711 -171378429 + LTR54 LTR ERV1 1 510 0 188 333 67 0 chrX 5595851 5595926 -171378214 - MER5A DNA MER1_type -73 116 37 * 266 310 81 0 chrX 5595861 5595948 -171378192 + MER5A DNA MER1_type 96 189 0 885 191 85 50 chrX 5596180 5596462 -171377678 + LTR37A LTR ERV1 3 294 -132 261 0 0 0 chrX 5596464 5596493 -171377647 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1424 150 4 34 chrX 5596507 5596741 -171377399 - AluJo SINE Alu -83 229 3 649 131 29 36 chrX 5596751 5596888 -171377252 + LTR37A LTR ERV1 291 426 0 2072 49 46 11 chrX 5598248 5598511 -171375629 - AluY SINE Alu -1 310 39 216 0 0 0 chrX 5598511 5598535 -171375605 + (CATA)n Simple_repeat Simple_repeat 4 27 0 790 185 0 22 chrX 5598538 5598673 -171375467 - FLAM_A SINE Alu -1 132 1 2046 119 53 87 chrX 5598703 5599081 -171375059 + MLT1A1 LTR MaLR 1 365 0 1206 177 22 26 chrX 5599994 5600226 -171373914 + MER92B LTR ERV1 34 264 -372 1111 169 86 79 chrX 5600259 5600537 -171373603 + MER92B LTR ERV1 357 636 0 669 236 91 0 chrX 5601034 5601199 -171372941 - MER5A DNA MER1_type 0 189 10 298 157 0 86 chrX 5601883 5601953 -171372187 + L1MB7 LINE L1 6087 6150 -34 1885 155 0 7 chrX 5601970 5602261 -171371879 - AluJb SINE Alu -17 295 7 5754 97 10 4 chrX 5602261 5602929 -171371211 - L1PA13 LINE L1 -5 6158 5483 2330 118 0 3 chrX 5602929 5603243 -171370897 - AluSq SINE Alu 0 313 1 5754 97 10 4 chrX 5603243 5603371 -171370769 - L1PA13 LINE L1 -680 5483 5357 270 105 193 0 chrX 5603361 5603418 -171370722 + L1MB7 LINE L1 6117 6184 0 * 1371 166 43 22 chrX 5603446 5603602 -171370538 + L1MA9 LINE L1 5995 6146 -166 180 0 0 0 chrX 5603602 5603622 -171370518 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1371 166 43 22 chrX 5603622 5603651 -171370489 + L1MA9 LINE L1 6146 6173 -139 2221 137 24 34 chrX 5603651 5604030 -171370110 - THE1C LTR MaLR 0 375 1 1371 166 43 22 chrX 5604030 5604120 -171370020 + L1MA9 LINE L1 6173 6277 -35 226 211 0 0 chrX 5604425 5604463 -171369677 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 0 0 0 chrX 5605183 5605209 -171368931 + AT_rich Low_complexity Low_complexity 1 26 0 1696 202 65 28 chrX 5605471 5605823 -171368317 - MLT1A1 LTR MaLR 0 365 1 2413 78 3 13 chrX 5605908 5606214 -171367926 - AluSp SINE Alu -10 303 1 229 286 214 10 chrX 5606531 5606629 -171367511 - L2 LINE L2 -5 3267 3150 407 205 26 0 chrX 5606741 5606819 -171367321 - MER46C DNA MER2_type -1 337 258 1096 243 140 34 chrX 5606832 5606948 -171367192 - MLT1I LTR MaLR 0 409 307 3273 173 12 12 chrX 5606948 5607463 -171366677 - MLT2B2 LTR ERVL 0 515 1 1096 243 140 34 chrX 5607463 5607704 -171366436 - MLT1I LTR MaLR -102 307 14 538 271 59 25 chrX 5607718 5607954 -171366186 - MER46C DNA MER2_type -94 244 1 638 212 33 54 chrX 5608076 5608133 -171366007 + MIR SINE MIR 45 102 -160 2668 157 49 2 chrX 5608133 5608540 -171365600 + MSTB LTR MaLR 1 426 0 638 212 33 54 chrX 5608540 5608666 -171365474 + MIR SINE MIR 102 224 -38 698 259 24 0 chrX 5608882 5609052 -171365088 - MER5B DNA MER1_type -4 174 1 375 236 99 43 chrX 5609734 5609895 -171364245 + HAL1 LINE L1 5 174 -2333 804 185 0 101 chrX 5609912 5610101 -171364039 + MER58B DNA MER1_type 172 341 0 505 248 8 8 chrX 5610111 5610232 -171363908 + HAL1 LINE L1 268 388 -2119 1691 171 27 24 chrX 5610299 5610627 -171363513 + MSTD LTR MaLR 17 345 -51 21 36 0 0 chrX 5610627 5610655 -171363485 + AT_rich Low_complexity Low_complexity 1 28 0 1070 172 32 93 chrX 5611047 5611326 -171362814 + L1MB5 LINE L1 5913 6174 0 944 106 0 57 chrX 5611645 5611786 -171362354 + FLAM_A SINE Alu 1 133 0 44127 36 21 2 chrX 5612704 5618930 -171355210 + L1HS LINE L1 1 6155 0 486 314 0 0 chrX 5619211 5619329 -171354811 - L2 LINE L2 -2 3270 3153 432 214 298 35 chrX 5620978 5621267 -171352873 - L2 LINE L2 -14 3299 2935 202 222 0 22 chrX 5622157 5622202 -171351938 - L2 LINE L2 0 3272 3229 1085 268 104 35 chrX 5622271 5622779 -171351361 + MLT1H1 LTR MaLR 6 548 -7 920 267 123 35 chrX 5623332 5623755 -171350385 - MLT1C LTR MaLR -7 460 1 2449 91 0 0 chrX 5623884 5624193 -171349947 - AluSx SINE Alu -3 309 1 266 303 42 35 chrX 5624194 5624336 -171349804 + L2 LINE L2 2942 3084 -188 21601 165 44 11 chrX 5624750 5625451 -171348689 - L1PA13 LINE L1 0 6814 6138 2541 97 58 17 chrX 5625451 5625811 -171348329 + THE1C LTR MaLR 1 375 0 21601 165 44 11 chrX 5625811 5631515 -171342625 - L1PA13 LINE L1 -676 6138 132 2721 94 22 2 chrX 5631516 5631922 -171342218 + MSTA LTR MaLR 15 428 0 272 271 31 10 chrX 5631922 5632018 -171342122 + MLT1J1 LTR MaLR 83 180 -266 684 264 65 55 chrX 5632181 5632473 -171341667 - MLT1I LTR MaLR 0 409 115 2031 158 31 23 chrX 5632509 5632896 -171341244 + MLT1B LTR MaLR 1 390 0 187 311 243 0 chrX 5633327 5633430 -171340710 + MIR SINE MIR 129 256 -6 572 242 25 13 chrX 5634907 5635064 -171339076 + MER20 DNA MER1_type 1 159 -60 2338 96 7 0 chrX 5635581 5635883 -171338257 - AluSx SINE Alu -8 304 1 4952 130 19 5 chrX 5636304 5637141 -171336999 - L1PA16 LINE L1 -1 6165 5317 423 337 163 22 chrX 5637644 5638205 -171335935 + L2 LINE L2 2460 3086 -186 840 265 51 9 chrX 5638245 5638460 -171335680 - MIR SINE MIR -8 254 31 1081 154 72 0 chrX 5638481 5638676 -171335464 + MER3 DNA MER1_type 1 209 0 225 270 111 0 chrX 5639654 5639717 -171334423 + Charlie8 DNA MER1_type 1 70 -2347 236 186 0 27 chrX 5639767 5639850 -171334290 + Charlie8 DNA MER1_type 1347 2415 -2 204 40 0 0 chrX 5639899 5639924 -171334216 + (A)n Simple_repeat Simple_repeat 1 25 0 313 281 131 44 chrX 5640734 5640894 -171333246 - MER5B DNA MER1_type 0 178 5 284 276 46 79 chrX 5641120 5641272 -171332868 + MIR SINE MIR 20 166 -96 1080 178 89 0 chrX 5642963 5643165 -171330975 + MER58A DNA MER1_type 1 220 -4 1854 159 21 7 chrX 5643490 5643780 -171330360 + AluSx SINE Alu 1 294 -18 3469 235 57 13 chrX 5644062 5645336 -171328804 + L1M4 LINE L1 2512 3842 -2304 261 273 77 16 chrX 5645350 5645533 -171328607 + L1M4 LINE L1 16 209 -6333 445 300 114 71 chrX 5645804 5646154 -171327986 + L1M4 LINE L1 542 906 -5636 274 301 0 12 chrX 5646159 5646242 -171327898 + GA-rich Low_complexity Low_complexity 1 82 0 544 154 0 108 chrX 5646371 5646501 -171327639 - L1ME LINE L1 -621 5543 5428 186 224 0 41 chrX 5646519 5646568 -171327572 + L2 LINE L2 3262 3308 -5 2260 129 0 0 chrX 5646624 5646926 -171327214 + AluSx SINE Alu 1 302 -10 615 325 48 0 chrX 5647227 5647436 -171326704 - MIR SINE MIR -31 231 13 30 27 0 0 chrX 5647878 5647915 -171326225 + AT_rich Low_complexity Low_complexity 1 37 0 1266 160 33 0 chrX 5650510 5650722 -171323418 - MER20 DNA MER1_type 0 219 1 2239 34 4 0 chrX 5651431 5651695 -171322445 + AluY SINE Alu 41 305 -6 199 182 0 159 chrX 5652239 5652327 -171321813 - L2 LINE L2 -69 3244 3171 1375 114 0 92 chrX 5652932 5653115 -171321025 + MER2 DNA MER2_type 20 172 -173 1804 158 7 3 chrX 5653115 5653407 -171320733 + AluJb SINE Alu 1 293 -19 1375 114 0 92 chrX 5653407 5653495 -171320645 + MER2 DNA MER2_type 172 266 -79 962 128 7 0 chrX 5653497 5653645 -171320495 - AluSp/q SINE Alu -8 305 157 2040 187 94 73 chrX 5653645 5654410 -171319730 - L1M4 LINE L1 -1313 4833 4053 1131 147 1 5 chrX 5654475 5654696 -171319444 - L1M3 LINE L1 -524 5656 5479 306 260 52 0 chrX 5655550 5655627 -171318513 - L2 LINE L2 -2 3311 3231 570 153 90 45 chrX 5655949 5656126 -171318014 - MER53 DNA DNA -4 185 1 419 137 14 0 chrX 5656223 5656296 -171317844 - LTR16C LTR ERVL -1 490 417 277 361 33 0 chrX 5656360 5656482 -171317658 - LTR16C LTR ERVL -212 279 154 337 321 55 0 chrX 5656669 5656778 -171317362 - MIR3 SINE MIR -7 201 87 251 254 17 0 chrX 5657401 5657460 -171316680 + L2 LINE L2 3208 3267 -5 974 139 11 0 chrX 5657965 5658145 -171315995 - L1MA7 LINE L1 -2 6289 6108 308 283 40 20 chrX 5658491 5658590 -171315550 - MIR3 SINE MIR -17 191 91 408 139 14 14 chrX 5658593 5658665 -171315475 - MER58B DNA MER1_type -1 340 269 263 374 176 4 chrX 5658822 5659060 -171315080 - L2 LINE L2 -217 3096 2818 1232 254 100 17 chrX 5659138 5659606 -171314534 + Charlie7 DNA MER1_type 44 550 -2062 226 208 195 0 chrX 5659702 5659779 -171314361 + MER112 DNA MER1_type 73 164 -96 918 216 39 26 chrX 5659849 5660159 -171313981 + Charlie7 DNA MER1_type 548 861 -1751 806 132 66 60 chrX 5660467 5660649 -171313491 + LTR54 LTR ERV1 1 183 -327 883 183 28 5 chrX 5660666 5660879 -171313261 + LTR54 LTR ERV1 293 510 0 450 353 63 9 chrX 5661104 5661325 -171312815 + MIR SINE MIR 15 247 -15 3067 27 0 64 chrX 5663412 5663820 -171310320 + L1PA4 LINE L1 5770 6151 -4 198 0 0 0 chrX 5663836 5663858 -171310282 + (A)n Simple_repeat Simple_repeat 1 22 0 204 40 0 0 chrX 5663962 5663987 -171310153 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 316 335 138 12 chrX 5664061 5664315 -171309825 - LTR16B LTR ERVL -177 287 2 2699 107 70 7 chrX 5664612 5665015 -171309125 + MSTA LTR MaLR 1 428 0 27 49 0 0 chrX 5665787 5665828 -171308312 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chrX 5667064 5667096 -171307044 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chrX 5667637 5667660 -171306480 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 5668034 5668069 -171306071 + AT_rich Low_complexity Low_complexity 1 35 0 13086 163 17 12 chrX 5668107 5670535 -171303605 - L1PA13 LINE L1 -5 6158 3744 1904 145 83 14 chrX 5670535 5670886 -171303254 + THE1C LTR MaLR 1 375 0 10314 99 30 48 chrX 5670886 5672495 -171301645 + THE1C-int LTR MaLR 1 1580 0 2110 133 50 8 chrX 5672495 5672855 -171301285 + THE1C LTR MaLR 1 375 0 13086 163 17 12 chrX 5672855 5673691 -171300449 - L1PA13 LINE L1 -2418 3745 2870 3551 207 59 81 chrX 5673793 5674551 -171299589 + L1ME1 LINE L1 4175 4948 -1218 185 0 40 0 chrX 5674551 5674576 -171299564 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3551 207 59 81 chrX 5674576 5675794 -171298346 + L1ME1 LINE L1 4948 6099 -67 218 291 18 0 chrX 5676690 5676745 -171297395 + MIR3 SINE MIR 135 190 -18 247 303 134 25 chrX 5677621 5677740 -171296400 + L2 LINE L2 3136 3267 -5 420 211 119 9 chrX 5677790 5677899 -171296241 + MIR SINE MIR 115 235 -27 229 200 0 0 chrX 5677869 5677904 -171296236 + L2 LINE L2 3210 3244 -28 * 700 274 116 34 chrX 5678058 5678412 -171295728 - MER68 LTR ERV1 0 562 180 272 210 16 0 chrX 5678468 5678530 -171295610 - MER68 LTR ERV1 -499 63 1 233 247 22 45 chrX 5678625 5678714 -171295426 + GA-rich Low_complexity Low_complexity 3 89 0 2763 184 24 11 chrX 5679378 5679999 -171294141 - L1P LINE L1 -3195 2951 2323 377 254 0 9 chrX 5680008 5680118 -171294022 + L1M4 LINE L1 2685 2793 -3353 921 138 0 0 chrX 5680120 5680258 -171293882 - AluJb SINE Alu 0 312 175 22 35 0 0 chrX 5680625 5680654 -171293486 + AT_rich Low_complexity Low_complexity 1 29 0 412 246 87 61 chrX 5681274 5681538 -171292602 + L1M4b LINE L1 5 275 -6584 5771 182 25 23 chrX 5681614 5683757 -171290383 - L1MB2 LINE L1 -7 6164 4019 234 209 60 0 chrX 5684262 5684329 -171289811 + GA-rich Low_complexity Low_complexity 3 73 0 1517 218 45 102 chrX 5684437 5684497 -171289643 + L1M4b LINE L1 1292 1354 -5605 1698 194 28 14 chrX 5684497 5684857 -171289283 + MLT1A1 LTR MaLR 1 365 0 1517 218 45 102 chrX 5684857 5685802 -171288338 + L1M4b LINE L1 1354 2231 -4728 2285 101 0 0 chrX 5685805 5686136 -171288004 + AluY SINE Alu 1 331 0 413 269 192 0 chrX 5686153 5686361 -171287779 + L1ME1 LINE L1 5914 6161 -5 215 346 68 45 chrX 5686494 5686627 -171287513 + L2 LINE L2 3121 3256 -16 893 236 116 95 chrX 5686776 5687335 -171286805 - MLT1L LTR MaLR -44 571 1 1710 176 10 10 chrX 5687940 5688241 -171285899 + AluJo SINE Alu 1 301 -11 588 302 80 9 chrX 5688960 5689185 -171284955 + L2 LINE L2 2418 2658 -656 902 188 29 86 chrX 5689364 5689796 -171284344 + MLT1A2 LTR MaLR 2 374 0 5936 81 19 17 chrX 5689931 5690913 -171283227 + L1PB2 LINE L1 5164 6147 -4 16419 26 0 0 chrX 5692035 5694750 -171279390 + L1PA3 LINE L1 3441 6155 0 26 30 0 0 chrX 5694750 5694783 -171279357 + AT_rich Low_complexity Low_complexity 1 33 0 247 236 16 87 chrX 5694817 5694944 -171279196 - L1M4b LINE L1 -5477 1382 1265 5799 103 4 52 chrX 5695118 5696132 -171278008 - L1P LINE L1 -1518 4628 3664 484 246 35 123 chrX 5696201 5696399 -171277741 - L1M4 LINE L1 -4424 2401 2187 1313 228 54 7 chrX 5696399 5696697 -171277443 - AluJo SINE Alu 0 312 1 484 246 35 123 chrX 5696697 5696821 -171277319 - L1M4 LINE L1 -4638 2187 2130 2004 137 0 44 chrX 5696821 5697142 -171276998 - AluSx SINE Alu -5 307 1 484 246 35 123 chrX 5697142 5697282 -171276858 - L1M4 LINE L1 -4695 2130 1979 335 241 0 0 chrX 5697283 5697366 -171276774 + MLT2B2 LTR ERVL 1 83 -432 235 146 0 0 chrX 5697358 5697399 -171276741 + MLT2B1 LTR ERVL 473 513 -7 * 1177 258 90 16 chrX 5697402 5698061 -171276079 - L1M4 LINE L1 -4815 1831 1112 2253 107 65 0 chrX 5698542 5698880 -171275260 + MER46B DNA MER2_type 2 236 0 525 229 34 0 chrX 5699098 5699216 -171274924 - L2 LINE L2 -4 3309 3188 291 288 111 26 chrX 5699207 5699360 -171274780 - L2 LINE L2 -936 2378 2213 * 325 230 171 49 chrX 5700164 5700451 -171273689 + L1 LINE L1 3073 3394 -2752 38 0 0 0 chrX 5700510 5700548 -171273592 + AT_rich Low_complexity Low_complexity 1 38 0 7000 37 1 0 chrX 5700548 5702039 -171272101 - L1PA3 LINE L1 -3 6152 4676 588 212 19 9 chrX 5702066 5702283 -171271857 + C-rich Low_complexity Low_complexity 1 219 0 3615 73 2 0 chrX 5702420 5702942 -171271198 + L1P LINE L1 954 1476 -4670 799 238 22 9 chrX 5703730 5703953 -171270187 + L2 LINE L2 2404 2629 -685 754 137 7 0 chrX 5703969 5704108 -171270032 - L1MA7 LINE L1 -2 6289 6150 239 222 0 0 chrX 5704145 5704190 -171269950 - MER5A DNA MER1_type -136 53 9 855 278 111 62 chrX 5704326 5704987 -171269153 + L2 LINE L2 2632 3313 0 574 236 48 24 chrX 5705092 5705300 -171268840 - L1MC5 LINE L1 -51 7910 7698 727 166 38 55 chrX 5705317 5705489 -171268651 - L1ME2 LINE L1 -158 6008 5840 536 204 154 49 chrX 5705674 5705836 -171268304 + MER5A DNA MER1_type 9 187 -2 2133 182 0 11 chrX 5705964 5706333 -171267807 - MLT1A1 LTR MaLR 0 365 1 972 189 18 28 chrX 5707296 5707513 -171266627 + MER20 DNA MER1_type 1 215 -4 411 218 20 30 chrX 5707822 5707923 -171266217 + MER5A DNA MER1_type 15 114 -75 606 233 80 6 chrX 5707983 5708146 -171265994 - MER5B DNA MER1_type -3 175 1 485 289 82 6 chrX 5708220 5708379 -171265761 + MIR SINE MIR 2 172 -90 765 230 43 95 chrX 5708390 5708759 -171265381 - MLT2C1 LTR ERVL -4 393 44 * 776 169 5 65 chrX 5708590 5708774 -171265366 - MLT1E3 LTR MaLR -402 222 50 352 286 20 27 chrX 5708775 5708922 -171265218 - MLT2F LTR ERVL -517 146 1 210 333 13 0 chrX 5708922 5709000 -171265140 + MIR SINE MIR 181 259 -3 1315 193 94 12 chrX 5709347 5709678 -171264462 + L1MD3 LINE L1 7635 7992 -3 214 227 45 15 chrX 5710606 5710672 -171263468 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 461 194 82 0 chrX 5710776 5710874 -171263266 - L2 LINE L2 0 3313 3208 657 239 6 28 chrX 5710889 5711065 -171263075 - MIR SINE MIR -2 260 89 638 259 20 73 chrX 5711963 5712210 -171261930 + MIR SINE MIR 15 248 -14 525 192 30 0 chrX 5712366 5712465 -171261675 - MER5A DNA MER1_type -77 112 11 269 380 9 9 chrX 5712483 5712591 -171261549 + MIR3 SINE MIR 76 183 -25 731 257 103 94 chrX 5712598 5713142 -171260998 + MLT1H LTR MaLR 1 549 0 333 175 0 0 chrX 5713346 5713403 -171260737 - Tigger5 DNA MER2_type -3 2320 2264 * 372 210 12 12 chrX 5713399 5713480 -171260660 + Tigger5 DNA MER2_type 2242 2322 -1 822 120 6 84 chrX 5713726 5713893 -171260247 + Tigger1 DNA MER2_type 1 154 -2264 * 1076 140 45 18 chrX 5713887 5714108 -171260032 + Tigger1 DNA MER2_type 2192 2418 0 2465 122 3 31 chrX 5715073 5715457 -171258683 - MER83C LTR ERV1 0 373 1 501 259 229 34 chrX 5715662 5715898 -171258242 - L2 LINE L2 -111 3202 2921 24 0 0 0 chrX 5715929 5715953 -171258187 + AT_rich Low_complexity Low_complexity 1 24 0 3027 126 22 38 chrX 5717234 5717782 -171256358 - L1MB2 LINE L1 -4 6167 5629 31 44 0 0 chrX 5718005 5718050 -171256090 + AT_rich Low_complexity Low_complexity 1 45 0 212 194 48 0 chrX 5718158 5718220 -171255920 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 195 184 0 0 chrX 5718252 5718290 -171255850 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 189 331 86 60 chrX 5719249 5719400 -171254740 + L3 LINE CR1 1224 1378 -199 607 249 49 53 chrX 5719801 5720146 -171253994 - MLT1I LTR MaLR -1 408 67 5246 125 29 14 chrX 5720360 5721214 -171252926 + L1MC1 LINE L1 5461 6327 -6 305 315 19 19 chrX 5721233 5721341 -171252799 + L3 LINE CR1 1469 1576 -1 351 390 58 25 chrX 5721361 5721635 -171252505 - L3 LINE CR1 -6 1571 1289 294 339 204 17 chrX 5722045 5722644 -171251496 + L2 LINE L2 1912 2622 -692 377 326 27 62 chrX 5722699 5722923 -171251217 - HAL1 LINE L1 -61 2446 2231 23 54 0 0 chrX 5723245 5723282 -171250858 + AT_rich Low_complexity Low_complexity 1 37 0 939 100 0 0 chrX 5724315 5724445 -171249695 - L1PA16 LINE L1 -10 6156 6027 1128 203 11 89 chrX 5724624 5724974 -171249166 + MLT2B1 LTR ERVL 1 323 -197 305 299 27 54 chrX 5725166 5725390 -171248750 + MER102b DNA MER1_type 124 341 0 286 261 36 18 chrX 5725448 5725559 -171248581 - MLT1J LTR MaLR 0 511 399 409 305 54 69 chrX 5725591 5726014 -171248126 + MLT1J LTR MaLR 1 417 -94 262 126 78 0 chrX 5726723 5726826 -171247314 + (TA)n Simple_repeat Simple_repeat 2 112 0 892 211 29 61 chrX 5728020 5728300 -171245840 - L1MD2 LINE L1 -17 6342 6072 228 184 79 53 chrX 5728340 5728416 -171245724 - MIR SINE MIR -63 199 122 432 0 0 0 chrX 5728650 5728698 -171245442 + (CA)n Simple_repeat Simple_repeat 1 48 0 731 292 142 0 chrX 5729176 5729281 -171244859 + L2 LINE L2 2046 2135 -1179 1115 198 28 0 chrX 5729281 5729493 -171244647 + MER20 DNA MER1_type 2 219 0 731 292 142 0 chrX 5729493 5729719 -171244421 + L2 LINE L2 2135 2424 -890 1698 217 9 0 chrX 5730002 5730338 -171243802 + MER58B DNA MER1_type 1 339 -2 242 304 230 6 chrX 5730396 5730557 -171243583 + MIR SINE MIR 58 254 -8 33 0 0 0 chrX 5730567 5730600 -171243540 + AT_rich Low_complexity Low_complexity 1 33 0 1689 211 17 42 chrX 5732071 5732473 -171241667 - MSTD LTR MaLR -2 394 3 628 294 25 0 chrX 5732476 5732678 -171241462 - LTR16C LTR ERVL -9 482 276 546 219 0 47 chrX 5732678 5732806 -171241334 - MER58A DNA MER1_type 0 224 103 1209 115 25 10 chrX 5732809 5733009 -171241131 + MER2 DNA MER2_type 4 206 -139 21 36 0 0 chrX 5733016 5733044 -171241096 + AT_rich Low_complexity Low_complexity 1 28 0 260 163 0 0 chrX 5733089 5733132 -171241008 + MER2 DNA MER2_type 301 343 -2 308 250 141 0 chrX 5733133 5733225 -171240915 - MER58A DNA MER1_type -2 105 1 605 187 159 0 chrX 5733233 5733415 -171240725 - MER5C DNA MER1_type -1 323 113 551 291 50 6 chrX 5733420 5733599 -171240541 - MIR SINE MIR -55 207 21 25 65 0 0 chrX 5733882 5733928 -171240212 + AT_rich Low_complexity Low_complexity 1 46 0 1072 207 55 28 chrX 5733938 5734283 -171239857 + MSTC LTR MaLR 1 428 0 2343 90 30 0 chrX 5734562 5734862 -171239278 - AluSg SINE Alu -1 309 1 2172 159 22 84 chrX 5735157 5735692 -171238448 - MLT1D LTR MaLR 0 505 4 578 121 20 0 chrX 5736039 5736138 -171238002 + MER89 LTR ERV1 459 559 0 2808 79 3 8 chrX 5736659 5737025 -171237115 + THE1B LTR MaLR 1 364 0 303 301 88 37 chrX 5737285 5737345 -171236795 - MIR3 SINE MIR -1 207 152 673 153 68 74 chrX 5737345 5737521 -171236619 + MER5B DNA MER1_type 4 178 0 303 301 88 37 chrX 5737521 5737596 -171236544 - MIR3 SINE MIR -56 152 65 362 198 198 64 chrX 5737663 5737820 -171236320 - MER5B DNA MER1_type 0 178 1 2116 138 0 0 chrX 5737842 5738133 -171236007 + AluSx SINE Alu 1 291 -21 2546 188 90 2 chrX 5738652 5739173 -171234967 - MLT1F1 LTR MaLR 0 567 1 2564 23 0 0 chrX 5739235 5739534 -171234606 + L1PA2 LINE L1 5857 6155 0 422 331 58 0 chrX 5740022 5740194 -171233946 + MIR SINE MIR 17 198 -64 25 31 0 0 chrX 5740735 5740767 -171233373 + AT_rich Low_complexity Low_complexity 1 32 0 799 326 61 22 chrX 5741590 5741952 -171232188 - L2 LINE L2 -639 2675 2300 2183 121 14 93 chrX 5742343 5742772 -171231368 + MLT2C1 LTR ERVL 1 395 -2 405 0 0 0 chrX 5742943 5742988 -171231152 + (GA)n Simple_repeat Simple_repeat 2 46 0 2824 209 37 35 chrX 5743515 5744596 -171229544 + L1ME2 LINE L1 4997 6074 -90 1842 172 0 3 chrX 5745473 5745775 -171228365 - AluJo SINE Alu -11 301 1 25 0 0 0 chrX 5746342 5746367 -171227773 + AT_rich Low_complexity Low_complexity 1 25 0 203 100 0 50 chrX 5747147 5747187 -171226953 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2099 133 3 13 chrX 5747217 5747519 -171226621 - AluSx SINE Alu -13 299 1 1066 196 48 0 chrX 5747776 5747985 -171226155 + MER20 DNA MER1_type 1 219 0 390 293 98 10 chrX 5748552 5748745 -171225395 - MIR SINE MIR -45 217 1 237 379 46 0 chrX 5749627 5749714 -171224426 + MIR SINE MIR 33 123 -85 500 236 70 70 chrX 5750098 5750357 -171223783 - ORSL DNA AcHobo 0 275 17 207 263 197 26 chrX 5750387 5750539 -171223601 + MIR SINE MIR 28 205 -57 1159 90 56 0 chrX 5751042 5751220 -171222920 - L1M2 LINE L1 -540 5751 5564 2683 116 34 27 chrX 5751221 5751695 -171222445 + L1MA7 LINE L1 5815 6291 0 237 250 57 11 chrX 5752366 5752454 -171221686 + L1ME4a LINE L1 5994 6085 -36 224 245 38 0 chrX 5753178 5753231 -171220909 + L2 LINE L2 3259 3313 0 257 240 74 80 chrX 5753326 5753501 -171220639 + L1ME LINE L1 5601 5774 -347 461 162 86 9 chrX 5753657 5753762 -171220378 + L1MC5 LINE L1 7035 7147 -814 1551 222 189 2 chrX 5753790 5754241 -171219899 - MLT1F LTR MaLR -3 539 5 979 207 31 105 chrX 5754247 5754705 -171219435 + L1MC5 LINE L1 7168 7591 -370 2064 142 7 0 chrX 5755087 5755382 -171218758 + AluSx SINE Alu 1 297 -15 2209 103 0 3 chrX 5755638 5755928 -171218212 - AluSq SINE Alu -24 289 1 2404 146 41 56 chrX 5755932 5756465 -171217675 - L1MB7 LINE L1 -76 6108 5584 1682 157 80 17 chrX 5756477 5756828 -171217312 + THE1C LTR MaLR 1 373 -2 23 54 0 0 chrX 5756828 5756865 -171217275 + AT_rich Low_complexity Low_complexity 1 37 0 349 183 9 122 chrX 5757096 5757211 -171216929 + L1MC5 LINE L1 7755 7856 -105 2226 99 16 0 chrX 5758113 5758416 -171215724 + AluSg1 SINE Alu 2 309 0 972 200 10 10 chrX 5759224 5759429 -171214711 - LTR48B LTR ERV1 0 644 440 1607 183 159 7 chrX 5760085 5760500 -171213640 - LTR48 LTR ERV1 -309 478 1 1686 156 87 10 chrX 5761616 5761905 -171212235 - AluJb SINE Alu -1 311 1 1092 174 1 4 chrX 5761960 5762203 -171211937 + MER58A DNA MER1_type 1 219 -5 432 234 193 27 chrX 5762336 5762751 -171211389 + MLT1H LTR MaLR 12 545 -10 22 0 0 0 chrX 5763368 5763390 -171210750 + AT_rich Low_complexity Low_complexity 1 22 0 3441 146 38 5 chrX 5763415 5764045 -171210095 + L1MB2 LINE L1 5520 6170 -1 1041 211 19 5 chrX 5764584 5764793 -171209347 - MER58A DNA MER1_type -3 221 10 23 0 0 0 chrX 5765008 5765031 -171209109 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 5765385 5765412 -171208728 + AT_rich Low_complexity Low_complexity 1 27 0 222 221 116 116 chrX 5765644 5765739 -171208401 + MER5A DNA MER1_type 95 189 0 357 287 11 0 chrX 5765821 5765915 -171208225 + L1MC/D LINE L1 5519 5613 -508 21 0 0 0 chrX 5766466 5766487 -171207653 + AT_rich Low_complexity Low_complexity 1 21 0 226 301 30 53 chrX 5767397 5767530 -171206610 + L1MC/D LINE L1 5682 5811 -1997 226 203 14 14 chrX 5767568 5767642 -171206498 + (TA)n Simple_repeat Simple_repeat 2 75 0 708 211 175 119 chrX 5768164 5768643 -171205497 - MLT1H LTR MaLR -8 541 36 1357 164 29 21 chrX 5769674 5769689 -171204451 - L1MB7 LINE L1 -21 6163 6150 2674 130 34 0 chrX 5769689 5770103 -171204037 - MSTA LTR MaLR 0 428 1 1357 164 29 21 chrX 5770103 5770368 -171203772 - L1MB7 LINE L1 -34 6150 5881 610 224 36 24 chrX 5770865 5771030 -171203110 - MER69A DNA AcHobo -10 167 1 2182 193 47 26 chrX 5771105 5771598 -171202542 + MLT1D LTR MaLR 1 503 -2 200 271 0 0 chrX 5771800 5771848 -171202292 + GA-rich Low_complexity Low_complexity 1 48 0 1536 93 14 19 chrX 5772890 5773105 -171201035 + AluSq SINE Alu 1 214 -99 929 186 50 25 chrX 5773105 5773304 -171200836 + AluJo SINE Alu 86 289 -23 518 67 13 0 chrX 5773322 5773397 -171200743 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 288 273 45 53 chrX 5773405 5773537 -171200603 + L2 LINE L2 2155 2285 -1029 843 231 77 15 chrX 5773600 5773630 -171200510 + L2 LINE L2 2625 2652 -661 2001 141 13 7 chrX 5773630 5773815 -171200325 - AluJo SINE Alu -5 307 118 207 0 0 0 chrX 5773815 5773838 -171200302 + (TG)n Simple_repeat Simple_repeat 2 24 0 2001 141 13 7 chrX 5773838 5773957 -171200183 - AluJo SINE Alu -194 118 1 843 231 77 15 chrX 5773957 5774325 -171199815 + L2 LINE L2 2652 3043 -270 2491 60 0 3 chrX 5776949 5777248 -171196892 - AluY SINE Alu -13 298 1 2463 74 3 0 chrX 5779271 5779580 -171194560 + AluY SINE Alu 1 310 -1 2113 107 0 4 chrX 5782008 5782288 -171191852 + AluSq SINE Alu 1 279 -34 619 235 142 73 chrX 5783646 5783935 -171190205 + MER58B DNA MER1_type 3 311 -30 1903 131 0 26 chrX 5783983 5784288 -171189852 + AluJb SINE Alu 1 297 -15 1438 189 86 17 chrX 5784635 5784937 -171189203 + MER58B DNA MER1_type 2 324 -17 1729 166 15 15 chrX 5785463 5785788 -171188352 + L1MB7 LINE L1 5797 6121 -63 423 129 43 0 chrX 5785808 5785878 -171188262 + L1MB5 LINE L1 6094 6166 -8 889 181 50 6 chrX 5786024 5786206 -171187934 + L1MB7 LINE L1 5902 6091 -93 1184 176 75 75 chrX 5786247 5786526 -171187614 - AluJo SINE Alu -31 281 3 369 83 50 0 chrX 5786537 5786597 -171187543 + L1MB7 LINE L1 6122 6184 0 217 258 121 45 chrX 5786698 5786830 -171187310 - L2 LINE L2 -10 3303 3162 1144 199 19 5 chrX 5788617 5788833 -171185307 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chrX 5790766 5790788 -171183352 + AT_rich Low_complexity Low_complexity 1 22 0 476 325 18 24 chrX 5791279 5791448 -171182692 + MER5B DNA MER1_type 1 168 -10 28 0 0 0 chrX 5793265 5793293 -171180847 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chrX 5795452 5795473 -171178667 + (CCCCCG)n Simple_repeat Simple_repeat 1 21 0 302 310 153 72 chrX 5795672 5796353 -171177787 - L1M2 LINE L1 -5610 1239 504 187 255 21 0 chrX 5796491 5796538 -171177602 + L2 LINE L2 3264 3311 -2 307 319 66 36 chrX 5797034 5797200 -171176940 - L2 LINE L2 -780 2534 2364 655 279 40 24 chrX 5797669 5797916 -171176224 + MIR SINE MIR 9 259 -3 198 0 0 0 chrX 5797953 5797975 -171176165 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 215 308 126 61 chrX 5797976 5798190 -171175950 - L2 LINE L2 -14 3258 3031 340 164 75 0 chrX 5798246 5798313 -171175827 - MER90 LTR ERV1 -360 254 183 193 302 0 0 chrX 5798540 5798593 -171175547 - MER5B DNA MER1_type 0 178 126 235 185 15 62 chrX 5798611 5798676 -171175464 + MER5B DNA MER1_type 112 173 -5 574 230 74 120 chrX 5798677 5799095 -171175045 + MLT1L LTR MaLR 144 542 -73 2449 200 34 53 chrX 5799766 5800350 -171173790 - MER90 LTR ERV1 -2 573 1 452 317 37 0 chrX 5800350 5800514 -171173626 - MIR SINE MIR -4 258 89 258 211 0 0 chrX 5800702 5800759 -171173381 + L1ME LINE L1 5799 5855 -266 466 230 129 22 chrX 5801265 5801443 -171172697 - MIR SINE MIR 0 262 66 1133 146 6 22 chrX 5802407 5802585 -171171555 - FAM SINE Alu 0 175 1 260 156 44 0 chrX 5803256 5803301 -171170839 + MLT1K LTR MaLR 540 586 -2 284 304 72 39 chrX 5804098 5804279 -171169861 + L2 LINE L2 2314 2500 -814 396 301 89 79 chrX 5804309 5804801 -171169339 + L2 LINE L2 2453 2949 -365 372 240 66 16 chrX 5804889 5805010 -171169130 + L2 LINE L2 3135 3261 -52 1646 173 0 20 chrX 5805167 5805467 -171168673 + AluJo SINE Alu 2 295 -17 419 254 45 45 chrX 5805669 5805803 -171168337 + L2 LINE L2 3139 3272 0 1867 128 0 32 chrX 5806318 5806453 -171167687 + AluSx SINE Alu 1 124 -188 198 0 0 0 chrX 5806453 5806475 -171167665 + (TA)n Simple_repeat Simple_repeat 2 23 0 1867 128 0 32 chrX 5806475 5806620 -171167520 + AluSx SINE Alu 124 272 -40 279 0 0 0 chrX 5806624 5806655 -171167485 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2964 254 88 25 chrX 5806973 5807723 -171166417 + L1M4 LINE L1 4012 4850 -1296 2030 158 56 12 chrX 5807723 5808046 -171166094 + MER1B DNA MER1_type 1 337 0 2964 254 88 25 chrX 5808046 5808351 -171165789 + L1M4 LINE L1 4850 5134 -1012 239 155 241 0 chrX 5808358 5808416 -171165724 - LOR1a LTR ERV1 -425 72 1 242 270 54 14 chrX 5808650 5808724 -171165416 - MIR SINE MIR -30 232 156 288 130 0 0 chrX 5808787 5808833 -171165307 + (CA)n Simple_repeat Simple_repeat 1 46 0 2076 129 7 7 chrX 5808872 5809166 -171164974 + AluSx SINE Alu 4 297 -15 1955 165 39 59 chrX 5809167 5809253 -171164887 + LOR1b LTR ERV1 63 149 -312 207 0 0 0 chrX 5809253 5809276 -171164864 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1955 165 39 59 chrX 5809276 5809596 -171164544 + LOR1b LTR ERV1 149 461 0 2519 68 0 0 chrX 5810651 5810959 -171163181 + AluY SINE Alu 3 310 -1 352 282 29 52 chrX 5812479 5812653 -171161487 - L1MC4a LINE L1 -1884 5924 5755 268 321 43 27 chrX 5813440 5813627 -171160513 - ERVL LTR ERVL -337 5427 5238 254 388 6 0 chrX 5814244 5814422 -171159718 - L1MC4a LINE L1 -2056 5752 5574 513 190 138 109 chrX 5814438 5814510 -171159630 + MER5A DNA MER1_type 11 79 -110 1660 193 21 0 chrX 5814510 5814795 -171159345 + AluJb SINE Alu 1 291 -21 513 190 138 109 chrX 5814795 5814896 -171159244 + MER5A DNA MER1_type 79 189 0 234 240 182 58 chrX 5814903 5815025 -171159115 - L1MC4a LINE L1 -2247 5561 5456 1774 154 6 61 chrX 5815025 5815355 -171158785 + AluSx SINE Alu 1 312 0 234 240 182 58 chrX 5815355 5815490 -171158650 - L1MC4a LINE L1 -2352 5456 5272 715 199 49 3 chrX 5816085 5816350 -171157790 + MLT1D LTR MaLR 147 505 0 503 226 119 48 chrX 5818754 5818922 -171155218 - MER117 DNA MER1_type 0 197 18 539 291 146 0 chrX 5819122 5819280 -171154860 - MER5A DNA MER1_type 0 189 9 271 280 178 8 chrX 5819353 5819509 -171154631 + MIR SINE MIR 12 189 -63 1050 173 77 29 chrX 5820371 5820579 -171153561 + MER20 DNA MER1_type 1 218 -1 5914 125 30 25 chrX 5821905 5822410 -171151730 - L1MA8 LINE L1 -3 6288 5787 1939 134 44 0 chrX 5822410 5822708 -171151432 - AluSx SINE Alu -1 311 1 5914 125 30 25 chrX 5822708 5823371 -171150769 - L1MA8 LINE L1 -504 5787 5112 197 336 69 9 chrX 5824471 5824587 -171149553 - L2 LINE L2 -21 3292 3170 2138 192 132 9 chrX 5824681 5825129 -171149011 + MLT1D LTR MaLR 3 505 0 6697 104 6 1 chrX 5825442 5827037 -171147103 + L1PA16 LINE L1 4558 6154 -12 27 0 0 0 chrX 5827037 5827064 -171147076 + AT_rich Low_complexity Low_complexity 1 27 0 219 349 95 8 chrX 5827996 5828122 -171146018 - MIR SINE MIR -123 139 3 1586 209 47 3 chrX 5828732 5829052 -171145088 + MER58B DNA MER1_type 1 334 -7 262 339 97 42 chrX 5829501 5829666 -171144474 - MER5A DNA MER1_type 0 189 16 725 126 0 18 chrX 5830201 5830312 -171143828 + AluJb SINE Alu 13 121 -191 180 77 0 0 chrX 5830312 5830338 -171143802 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 196 192 61 61 chrX 5830867 5830966 -171143174 + L2 LINE L2 2386 2484 -830 741 306 70 25 chrX 5830976 5831303 -171142837 + MLT2F LTR ERVL 3 344 -319 247 246 8 59 chrX 5831349 5831421 -171142719 + MLT2F LTR ERVL 552 617 -46 2044 161 24 24 chrX 5831421 5831793 -171142347 - MLT1A2 LTR MaLR -2 372 1 247 246 8 59 chrX 5831793 5831838 -171142302 + MLT2F LTR ERVL 617 663 0 2340 50 0 7 chrX 5831892 5832170 -171141970 - AluY SINE Alu -2 309 34 653 244 0 29 chrX 5832434 5832606 -171141534 + MIR SINE MIR 94 260 -2 1872 148 24 14 chrX 5832680 5832977 -171141163 - AluSx SINE Alu -12 300 1 2419 174 54 11 chrX 5833876 5834324 -171139816 - MLT1C LTR MaLR 0 467 1 277 303 40 0 chrX 5834462 5834561 -171139579 + MLT1J2 LTR MaLR 55 157 -293 1054 201 9 31 chrX 5835498 5835722 -171138418 + MER20 DNA MER1_type 1 219 0 183 207 86 35 chrX 5835833 5835891 -171138249 - MIR SINE MIR -1 261 201 2288 121 0 0 chrX 5835932 5836239 -171137901 - AluSx SINE Alu -5 307 1 288 240 113 95 chrX 5836451 5836531 -171137609 + L1ME4a LINE L1 5813 5890 -231 2121 133 7 0 chrX 5836531 5836824 -171137316 + AluSx SINE Alu 1 295 -17 288 240 113 95 chrX 5836824 5837026 -171137114 + L1ME4a LINE L1 5890 6100 -21 306 0 0 0 chrX 5837591 5837625 -171136515 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 684 177 0 15 chrX 5837937 5838067 -171136073 + MER20 DNA MER1_type 1 128 -91 2180 110 0 13 chrX 5838138 5838438 -171135702 - AluSx SINE Alu -14 298 3 1035 232 135 11 chrX 5838648 5839223 -171134917 + LTR50 LTR ERVL 1 791 -4 730 153 24 0 chrX 5840365 5840489 -171133651 + L1MB8 LINE L1 5989 6115 -63 44178 28 21 1 chrX 5840608 5846639 -171127501 - L1HS LINE L1 0 6155 1 552 236 9 96 chrX 5846728 5846948 -171127192 - L1MC4a LINE L1 -1853 5955 5755 491 248 72 8 chrX 5847712 5847837 -171126303 - MIR3 SINE MIR -19 189 57 2733 125 2 20 chrX 5847885 5848294 -171125846 + MER50 LTR ERV1 324 725 -9 2138 106 3 13 chrX 5849899 5850202 -171123938 + AluSp SINE Alu 1 300 -13 2209 113 0 0 chrX 5852268 5852560 -171121580 + AluSx SINE Alu 1 292 -20 395 261 71 76 chrX 5853415 5853577 -171120563 - L2 LINE L2 0 3313 3151 1733 124 0 127 chrX 5853577 5853923 -171120217 + AluJo SINE Alu 1 302 0 395 261 71 76 chrX 5853923 5853998 -171120142 - L2 LINE L2 -162 3151 3077 2263 112 3 6 chrX 5854009 5854321 -171119819 - AluSx SINE Alu -1 311 1 271 328 122 28 chrX 5855353 5855537 -171118603 + MIR3 SINE MIR 9 206 -56 601 191 0 0 chrX 5855769 5855876 -171118264 - MER5A DNA MER1_type -82 107 1 231 337 89 15 chrX 5856057 5856259 -171117881 - MLT1L LTR MaLR -202 413 197 23 33 0 0 chrX 5858203 5858233 -171115907 + AT_rich Low_complexity Low_complexity 1 30 0 2068 86 52 0 chrX 5858501 5858802 -171115338 - AluSx SINE Alu 0 315 1 360 220 60 40 chrX 5859285 5859385 -171114755 - L2 LINE L2 0 3313 3212 514 211 199 39 chrX 5859415 5859571 -171114569 + MER5A DNA MER1_type 9 189 0 504 250 11 28 chrX 5860530 5860710 -171113430 + L1M4 LINE L1 2222 2398 -3748 688 287 54 43 chrX 5860733 5861046 -171113094 + L1M4 LINE L1 2650 2958 -3188 873 153 0 23 chrX 5861046 5861177 -171112963 + FLAM_A SINE Alu 1 128 -5 688 287 54 43 chrX 5861177 5861214 -171112926 + L1M4 LINE L1 2958 2993 -3153 2841 101 3 14 chrX 5861214 5861582 -171112558 - THE1B LTR MaLR 0 364 1 688 287 54 43 chrX 5861582 5861919 -171112221 + L1M4 LINE L1 2993 3345 -2801 2143 139 124 23 chrX 5862051 5862438 -171111702 + MSTA LTR MaLR 3 428 0 594 138 60 69 chrX 5863170 5863286 -171110854 + FLAM_A SINE Alu 10 124 -18 6037 138 31 14 chrX 5863303 5864606 -171109534 - L1MA7 LINE L1 0 6291 4964 22 0 0 0 chrX 5864662 5864684 -171109456 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chrX 5865169 5865205 -171108935 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrX 5865754 5865790 -171108350 + AT_rich Low_complexity Low_complexity 1 36 0 294 305 53 22 chrX 5866473 5866608 -171107532 - MIR SINE MIR -74 134 13 254 276 29 29 chrX 5867278 5867383 -171106757 - L1 LINE L1 -1134 5012 4908 181 358 173 26 chrX 5867546 5867772 -171106368 - L2 LINE L2 -5 3267 3009 612 186 98 0 chrX 5867839 5867941 -171106199 + FLAM_A SINE Alu 9 120 -22 200 305 16 47 chrX 5868149 5868277 -171105863 - L2 LINE L2 -646 2668 2545 243 291 71 47 chrX 5869166 5869293 -171104847 + MIR3 SINE MIR 73 202 -6 302 216 117 9 chrX 5870010 5870121 -171104019 - L1MEc LINE L1 -4080 2316 2194 1526 122 36 0 chrX 5870121 5870342 -171103798 - L1PA15 LINE L1 -2 6163 5935 340 256 0 22 chrX 5871112 5871202 -171102938 + L1MC4 LINE L1 6614 6701 -1341 1993 142 23 54 chrX 5871244 5871467 -171102673 - MER2 DNA MER2_type 0 344 133 1901 136 0 0 chrX 5871467 5871759 -171102381 + AluSx SINE Alu 19 310 0 1993 142 23 54 chrX 5871759 5871887 -171102253 - MER2 DNA MER2_type -211 133 3 2090 127 16 7 chrX 5872892 5873200 -171100940 + AluJb SINE Alu 1 311 -1 651 248 171 0 chrX 5873315 5873525 -171100615 - MIR SINE MIR -5 257 12 1959 141 3 0 chrX 5873603 5874028 -171100112 + AluSx SINE Alu 1 426 0 1968 132 0 4 chrX 5875826 5876107 -171098033 + AluSx SINE Alu 20 299 -13 671 258 112 27 chrX 5876281 5876541 -171097599 + L2 LINE L2 3021 3302 -11 305 141 47 16 chrX 5877642 5877706 -171096434 + L1MB7 LINE L1 6110 6175 -9 217 320 100 0 chrX 5877832 5877932 -171096208 - L2 LINE L2 0 3313 3204 2674 144 74 2 chrX 5878293 5878693 -171095447 - LOR1b LTR ERV1 0 461 26 2724 26 3 0 chrX 5878693 5878999 -171095141 + AluY SINE Alu 1 307 -4 2674 144 74 2 chrX 5878999 5879028 -171095112 - LOR1b LTR ERV1 -435 26 1 180 225 25 0 chrX 5879525 5879565 -171094575 + L3b LINE CR1 1205 1245 -338 259 243 103 56 chrX 5879782 5879889 -171094251 + MIR SINE MIR 131 242 -20 666 243 68 19 chrX 5880074 5880280 -171093860 + MIR SINE MIR 47 262 0 184 297 16 16 chrX 5880443 5880507 -171093633 - MIR SINE MIR -111 151 88 270 0 0 0 chrX 5880518 5880548 -171093592 + (TC)n Simple_repeat Simple_repeat 1 30 0 2154 189 19 43 chrX 5882108 5882578 -171091562 - MLT1C LTR MaLR -8 459 1 376 221 17 15 chrX 5882731 5882838 -171091302 + L1ME2 LINE L1 6028 6139 -31 2233 110 3 0 chrX 5883647 5883955 -171090185 + AluSq SINE Alu 1 309 -4 204 40 0 0 chrX 5891455 5891480 -171082660 + (TG)n Simple_repeat Simple_repeat 2 26 0 1120 205 19 0 chrX 5891856 5892071 -171082069 - MER20 DNA MER1_type 0 219 1 216 402 25 33 chrX 5892899 5893143 -171080997 - L2 LINE L2 -108 3164 2923 1753 121 121 14 chrX 5893327 5893609 -171080531 - AluSx SINE Alu 0 312 1 728 194 87 24 chrX 5893862 5893940 -171080200 + MER20 DNA MER1_type 1 73 -146 1652 168 157 42 chrX 5893940 5894393 -171079747 - MLT1D LTR MaLR 0 505 1 728 194 87 24 chrX 5894393 5894520 -171079620 + MER20 DNA MER1_type 73 219 0 1097 206 5 5 chrX 5894867 5895086 -171079054 + MER20 DNA MER1_type 1 219 0 284 359 84 7 chrX 5895668 5895810 -171078330 - MIR3 SINE MIR -21 187 35 294 362 48 43 chrX 5896046 5896438 -171077702 + L2 LINE L2 2087 2480 -834 187 321 115 36 chrX 5896830 5896995 -171077145 - L2 LINE L2 -7 3306 3129 1941 136 101 119 chrX 5897011 5897525 -171076615 + MLT1D LTR MaLR 1 505 0 3952 154 32 9 chrX 5898253 5899000 -171075140 + L1MB7 LINE L1 5401 6164 -20 268 327 49 43 chrX 5899971 5900133 -171074007 - MIR SINE MIR -79 183 21 * 764 231 121 5 chrX 5900094 5900293 -171073847 + MIR SINE MIR 29 250 -12 195 170 21 43 chrX 5900377 5900424 -171073716 - L2 LINE L2 -5 3308 3263 237 309 157 51 chrX 5900996 5901232 -171072908 - L3 LINE CR1 -9 1568 1308 240 100 0 0 chrX 5901456 5901496 -171072644 - L1PA13 LINE L1 -1245 4901 4862 6321 87 9 3 chrX 5901498 5902752 -171071388 + L1PA13 LINE L1 4891 6158 -5 1928 160 16 16 chrX 5903593 5903905 -171070235 + AluJo SINE Alu 1 312 0 323 282 123 26 chrX 5904244 5904439 -171069701 - LTR16C LTR ERVL -2 489 276 694 231 144 19 chrX 5904462 5904670 -171069470 - MLT1H LTR MaLR 0 555 322 493 218 9 9 chrX 5904742 5904852 -171069288 - MLT1H1 LTR MaLR -444 111 2 185 279 342 0 chrX 5905146 5905257 -171068883 + MIR SINE MIR 46 194 -68 1362 154 36 0 chrX 5905591 5905838 -171068302 - L1MA6 LINE L1 -9 6291 6036 1035 197 95 19 chrX 5905839 5906103 -171068037 - L1MD3 LINE L1 -161 7834 7551 1123 135 68 117 chrX 5907553 5907879 -171066261 + THE1C LTR MaLR 1 310 -65 3077 216 26 25 chrX 5908585 5909405 -171064735 - L1ME1 LINE L1 -52 6114 5297 227 239 0 45 chrX 5909450 5909517 -171064623 + LTR67 LTR ERVL 231 294 -263 794 239 53 0 chrX 5910007 5910216 -171063924 - MLT1H LTR MaLR -246 303 84 301 100 0 0 chrX 5910981 5911031 -171063109 - L1MB8 LINE L1 -6 6172 6123 2335 158 16 18 chrX 5911031 5911475 -171062665 - L1MB7 LINE L1 -122 6062 5620 222 237 0 0 chrX 5914082 5914158 -171059982 + CT-rich Low_complexity Low_complexity 1 76 0 2906 67 0 0 chrX 5914297 5914669 -171059471 + L1PA6 LINE L1 5777 6148 -6 439 33 0 0 chrX 5915085 5915145 -171058995 - L1MA2 LINE L1 -1 6303 6244 510 219 9 0 chrX 5917652 5917757 -171056383 + MER94 DNA DNA 1 106 -28 30 45 0 0 chrX 5918399 5918443 -171055697 + AT_rich Low_complexity Low_complexity 1 44 0 384 224 35 46 chrX 5918450 5918624 -171055516 - L1ME4a LINE L1 -3 6118 5947 1858 237 117 16 chrX 5918625 5919136 -171055004 + MLT1E LTR MaLR 31 593 0 560 277 34 43 chrX 5919169 5919494 -171054646 - L1ME4a LINE L1 -239 5882 5561 22 0 0 0 chrX 5919591 5919613 -171054527 + AT_rich Low_complexity Low_complexity 1 22 0 1016 176 5 4 chrX 6019642 6023490 -170950650 - ALR/Alpha Satellite centromeric 0 3854 1 1177 162 4 2 chrX 6023504 6025778 -170948362 + ALR/Alpha Satellite centromeric 1 2268 -18819 8441 58 7 0 chrX 6025778 6027633 -170946507 + L1PA3 LINE L1 4292 6152 -3 1177 162 4 2 chrX 6027633 6029238 -170944902 + ALR/Alpha Satellite centromeric 2268 3868 -17219 7013 47 5 2 chrX 6029238 6030861 -170943279 - L1PA3 LINE L1 -3 6152 4523 1177 162 4 2 chrX 6030861 6044528 -170929612 + ALR/Alpha Satellite centromeric 3868 21074 -13 1098 152 3 3 chrX 6044541 6046704 -170927436 + ALR/Alpha Satellite centromeric 1 2164 -59 2510 131 129 164 chrX 6046706 6047589 -170926551 - pTR5 LTR ERV1 0 2438 1587 1025 191 1 0 chrX 6047605 6049987 -170924153 - ALR/Alpha Satellite centromeric -2 2383 1 1344 133 3 0 chrX 6050001 6051432 -170922708 - ALR/Alpha Satellite centromeric 0 1434 1 1188 156 2 1 chrX 6051444 6072481 -170901659 - ALR/Alpha Satellite centromeric -1 21060 1 7319 46 0 0 chrX 6072481 6074024 -170900116 + L1PA3 LINE L1 4610 6151 -4 25 31 0 0 chrX 6074024 6074056 -170900084 + AT_rich Low_complexity Low_complexity 1 32 0 242 0 61 0 chrX 6074061 6074094 -170900046 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1095 165 4 3 chrX 6074094 6080653 -170893487 + ALR/Alpha Satellite centromeric 1 7889 -111 7430 37 0 0 chrX 6080653 6081972 -170892168 - L1PA3 LINE L1 0 6155 4837 9294 33 0 2 chrX 6081983 6083102 -170891038 + L1PA3 LINE L1 3691 4807 -1339 1144 169 4 4 chrX 6083102 6090516 -170883624 + ALR/Alpha Satellite centromeric 1 7416 -9 1083 171 2 3 chrX 6090527 6096019 -170878121 + ALR/Alpha Satellite centromeric 1 5484 -6 1070 155 5 2 chrX 6096031 6097389 -170876751 + ALR/Alpha Satellite centromeric 1 1361 -6 1034 173 1 2 chrX 6097404 6098934 -170875206 + ALR/Alpha Satellite centromeric 1 1527 -26 1089 170 5 2 chrX 6098945 6111117 -170863023 + ALR/Alpha Satellite centromeric 1 12213 -1 1124 176 8 5 chrX 6111129 6115821 -170858319 + ALR/Alpha Satellite centromeric 1 4705 -16 5166 74 3 0 chrX 6115821 6116514 -170857626 - L1PA4 LINE L1 -1070 5076 4382 6933 58 1 9 chrX 6116514 6117586 -170856554 + L1PA4 LINE L1 5085 6152 -3 976 163 4 2 chrX 6117594 6118142 -170855998 + ALR/Alpha Satellite centromeric 1 549 -1 15868 74 9 1 chrX 6118142 6120286 -170853854 + L1PA4 LINE L1 665 2825 -3321 6247 40 3 0 chrX 6120286 6121038 -170853102 + L1PA3 LINE L1 5397 6152 -3 19383 60 2 8 chrX 6121057 6124370 -170849770 + L1PA4 LINE L1 2840 6155 0 1153 163 5 2 chrX 6124375 6134381 -170839759 + ALR/Alpha Satellite centromeric 1 10038 0 1189 143 6 3 chrX 6134394 6141374 -170832766 + ALR/Alpha Satellite centromeric 1 6997 0 1223 152 7 1 chrX 6141387 6151720 -170822420 + ALR/Alpha Satellite centromeric 1 10396 0 4736 41 7 0 chrX 6151747 6152329 -170821811 + L1PA3 LINE L1 5566 6151 -4 1099 156 3 2 chrX 6152385 6153690 -170820450 + ALR/Alpha Satellite centromeric 1 1306 0 201 74 0 0 chrX 6153708 6153735 -170820405 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 7100 50 0 0 chrX 6153735 6154702 -170819438 - L1PA4 LINE L1 -13 6142 5174 20384 49 6 8 chrX 6154702 6157324 -170816816 + L1PA4 LINE L1 2533 5148 -998 1156 163 2 3 chrX 6157326 6164527 -170809613 + ALR/Alpha Satellite centromeric 1 7198 -14 1072 169 0 4 chrX 6164542 6165047 -170809093 + ALR/Alpha Satellite centromeric 1 502 -12 1209 158 9 1 chrX 6165059 6168932 -170805208 + ALR/Alpha Satellite centromeric 1 3901 -64 21058 57 3 9 chrX 6168932 6171723 -170802417 - L1PA4 LINE L1 -1119 5027 2253 6370 86 8 0 chrX 6171723 6172841 -170801299 + L1PA4 LINE L1 5028 6151 -4 1055 167 17 4 chrX 6172874 6175745 -170798395 + ALR/Alpha Satellite centromeric 1 2906 -15 1021 178 7 4 chrX 6175758 6178973 -170795167 + ALR/Alpha Satellite centromeric 1 3224 -14 1180 157 8 3 chrX 6178987 6188885 -170785255 + ALR/Alpha Satellite centromeric 1 10054 -7923 201 39 0 0 chrX 6188885 6188911 -170785229 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1180 157 8 3 chrX 6188911 6196865 -170777275 + ALR/Alpha Satellite centromeric 10054 17967 -10 1114 165 8 4 chrX 6196876 6203452 -170770688 + ALR/Alpha Satellite centromeric 1 6601 -34 369 0 0 0 chrX 6203454 6203495 -170770645 + (TG)n Simple_repeat Simple_repeat 2 42 0 1192 153 7 2 chrX 6203505 6213058 -170761082 + ALR/Alpha Satellite centromeric 1 9602 0 539 230 7 52 chrX 6313061 6313196 -170660944 + MIR SINE MIR 43 171 -91 322 287 64 37 chrX 6314303 6314491 -170659649 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6314577 6314740 -170659400 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6314950 6315026 -170659114 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6315764 6315959 -170658181 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6317134 6317175 -170656965 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6317174 6317245 -170656895 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6317462 6317483 -170656657 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6318228 6318465 -170655675 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6319133 6319352 -170654788 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6319377 6319537 -170654603 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6319553 6319739 -170654401 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6319792 6320215 -170653925 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6320316 6320429 -170653711 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6320468 6320566 -170653574 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6321182 6321226 -170652914 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6321293 6321494 -170652646 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6322205 6322305 -170651835 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6322415 6322705 -170651435 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6322932 6323390 -170650750 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6323808 6323861 -170650279 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6323864 6324403 -170649737 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6324783 6325637 -170648503 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6325714 6325929 -170648211 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6326090 6326111 -170648029 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6326479 6326652 -170647488 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6326841 6327138 -170647002 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6327620 6327750 -170646390 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6327808 6327849 -170646291 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6327923 6328116 -170646024 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6328509 6328531 -170645609 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6329329 6329628 -170644512 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6329907 6329956 -170644184 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6329965 6330152 -170643988 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6330243 6330361 -170643779 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6331764 6332351 -170641789 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6332351 6332857 -170641283 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6332857 6332923 -170641217 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6333525 6333818 -170640322 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6333818 6334868 -170639272 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6334868 6334945 -170639195 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6334966 6335112 -170639028 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6335581 6335780 -170638360 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6336925 6337011 -170637129 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6337018 6337048 -170637092 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6337427 6337489 -170636651 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6338833 6339046 -170635094 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6339216 6339590 -170634550 - Tigger3(Golem) DNA MER2_type 0 3029 1 232 273 81 20 chrX 6339809 6339908 -170634232 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6340128 6340194 -170633946 + L2 LINE L2 3206 3266 -6 408 40 0 0 chrX 6341664 6341714 -170632426 + (CA)n Simple_repeat Simple_repeat 2 51 0 1722 140 15 4 chrX 6342196 6342286 -170631854 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6342286 6342309 -170631831 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6342309 6342483 -170631657 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6342508 6342592 -170631548 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6343452 6343480 -170630660 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6343892 6343970 -170630170 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6343985 6344292 -170629848 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6344309 6344492 -170629648 - MLT1F1 LTR MaLR -50 517 316 247 271 101 55 chrX 6344640 6344839 -170629301 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6345177 6345390 -170628750 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6345757 6345892 -170628248 - Charlie8 DNA MER1_type -2231 186 45 337 302 31 16 chrX 6346443 6346572 -170627568 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6346671 6346758 -170627382 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6346801 6347174 -170626966 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6347175 6348258 -170625882 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6348253 6348603 -170625537 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6348725 6348753 -170625387 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6350583 6350907 -170623233 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6350948 6351280 -170622860 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6351299 6351417 -170622723 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6352263 6352470 -170621670 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6352491 6352635 -170621505 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6352750 6353057 -170621083 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6355432 6355462 -170618678 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6356827 6357244 -170616896 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6357944 6358105 -170616035 + L2 LINE L2 678 839 -2475 601 271 50 9 chrX 6358180 6358391 -170615749 - MIR SINE MIR -49 213 2 314 293 152 19 chrX 6358409 6358778 -170615362 + L2 LINE L2 872 1289 -2025 1260 95 8 104 chrX 6361296 6361537 -170612603 + L1PA15 LINE L1 5942 6159 -6 1345 117 4 0 chrX 6361918 6362148 -170611992 + L1PA7 LINE L1 2997 3227 -2919 * 6397 37 0 0 chrX 6362146 6362965 -170611175 - L1P LINE L1 -3692 2454 1636 7872 14 0 0 chrX 6362965 6364357 -170609783 + L1PA2 LINE L1 4762 6153 -2 3118 118 4 0 chrX 6364361 6364861 -170609279 + L1PA7 LINE L1 3230 3731 -2415 7096 52 6 2 chrX 6364862 6366529 -170607611 + L1PA7 LINE L1 4480 6154 0 1550 138 5 0 chrX 6366655 6366872 -170607268 - AluSx SINE Alu -94 218 1 283 270 30 60 chrX 6367066 6367166 -170606974 - MIR SINE MIR -48 214 118 733 291 124 45 chrX 6367468 6367983 -170606157 - MLT1L LTR MaLR -59 556 1 685 233 56 42 chrX 6368869 6369084 -170605056 - MER20 DNA MER1_type -1 218 1 747 171 50 17 chrX 6369340 6369521 -170604619 + MER53 DNA DNA 1 187 -2 2496 135 36 42 chrX 6370493 6370997 -170603143 - L1MB8 LINE L1 -6 6172 5672 946 172 41 0 chrX 6371417 6371586 -170602554 - MER45A DNA AcHobo -2 176 1 2519 199 105 5 chrX 6372454 6373102 -170601038 - L1ME3 LINE L1 -11 6134 5422 306 214 57 64 chrX 6373102 6373123 -170601017 - L1MA10 LINE L1 -2 6332 6312 2934 224 39 17 chrX 6373123 6373936 -170600204 - L1ME2 LINE L1 -9 6155 5325 2158 239 67 40 chrX 6373999 6375085 -170599055 - L1ME2 LINE L1 -851 5295 4147 467 205 161 53 chrX 6375143 6375484 -170598656 - L1ME3 LINE L1 -746 5383 5006 426 20 0 0 chrX 6375513 6375564 -170598576 + (TG)n Simple_repeat Simple_repeat 2 52 0 421 266 53 89 chrX 6375616 6376010 -170598130 + L1ME4a LINE L1 5465 5844 -277 2211 200 20 20 chrX 6376012 6376468 -170597672 - MSTB2 LTR MaLR 0 457 2 1747 200 30 30 chrX 6377349 6377810 -170596330 - MLT1C LTR MaLR 0 467 7 829 276 96 68 chrX 6378545 6378810 -170595330 + L2 LINE L2 2864 3147 -166 1103 161 28 5 chrX 6378810 6379021 -170595119 + MER20 DNA MER1_type 1 216 -3 829 276 96 68 chrX 6379021 6379193 -170594947 + L2 LINE L2 3147 3313 0 320 244 12 0 chrX 6379286 6379368 -170594772 - L1MCc LINE L1 -5519 904 822 314 272 35 9 chrX 6379449 6379563 -170594577 - L1ME3 LINE L1 -1572 4557 4441 578 118 0 55 chrX 6379927 6380037 -170594103 - L1MD3 LINE L1 -12 7983 7880 782 225 6 0 chrX 6380211 6380371 -170593769 - MER45A DNA AcHobo -17 161 1 1374 200 61 47 chrX 6381958 6382318 -170591822 - MLT1A1 LTR MaLR 0 365 1 235 276 103 0 chrX 6382758 6382845 -170591295 - L1ME3 LINE L1 -5075 1044 949 1161 249 24 51 chrX 6382853 6383085 -170591055 - L1ME3A LINE L1 -2 6168 5951 1942 156 0 0 chrX 6383085 6383422 -170590718 - AluSx SINE Alu 0 342 6 1161 249 24 51 chrX 6383422 6383641 -170590499 - L1ME3A LINE L1 -219 5951 5728 401 79 0 0 chrX 6383735 6383798 -170590342 - AluJo SINE Alu -8 304 242 1027 171 0 0 chrX 6383810 6383968 -170590172 - AluJo SINE Alu -154 158 1 1693 197 3 0 chrX 6384325 6384620 -170589520 + AluJo SINE Alu 5 300 -12 211 374 24 32 chrX 6385023 6385146 -170588994 - L2 LINE L2 -185 3087 2966 402 74 0 0 chrX 6385146 6385200 -170588940 + (GGA)n Simple_repeat Simple_repeat 2 55 0 481 207 16 16 chrX 6385276 6385397 -170588743 + MER3 DNA MER1_type 48 168 -41 891 155 14 26 chrX 6385409 6385757 -170588383 + MER3 DNA MER1_type 2234 2623 0 324 240 195 32 chrX 6385796 6385950 -170588190 + MIR SINE MIR 84 262 0 26 0 0 0 chrX 6386845 6386871 -170587269 + AT_rich Low_complexity Low_complexity 1 26 0 341 296 113 54 chrX 6387021 6387224 -170586916 - MLT1J LTR MaLR -10 501 287 2015 154 0 7 chrX 6387484 6387790 -170586350 + AluJo SINE Alu 1 304 -8 302 306 37 15 chrX 6389559 6389693 -170584447 - L2 LINE L2 0 3272 3136 401 360 89 0 chrX 6389733 6389936 -170584204 + L2 LINE L2 2804 3024 -289 298 310 123 7 chrX 6390079 6390234 -170583906 + MLT1I LTR MaLR 235 407 -2 716 239 29 0 chrX 6390250 6390388 -170583752 - MIR SINE MIR -96 166 25 197 214 0 0 chrX 6390494 6390536 -170583604 + L2 LINE L2 3231 3272 0 1786 228 52 90 chrX 6390551 6391165 -170582975 - MLT1E LTR MaLR 0 593 3 522 183 91 63 chrX 6391466 6391641 -170582499 - L1ME1 LINE L1 -4 6162 5983 567 282 48 52 chrX 6391691 6391943 -170582197 + MIR SINE MIR 2 252 -10 1021 234 13 99 chrX 6392045 6392439 -170581701 + L2 LINE L2 2953 3312 -1 320 266 65 29 chrX 6392454 6392593 -170581547 - MIR SINE MIR -48 214 71 1000 283 113 3 chrX 6393125 6393478 -170580662 - LTR16C LTR ERVL 0 491 100 2075 242 38 14 chrX 6393512 6394016 -170580124 + LTR40a LTR ERVL 1 516 -3 790 252 54 32 chrX 6394785 6395190 -170578950 - L1M4 LINE L1 -1527 4619 4206 2219 75 0 55 chrX 6396865 6397173 -170576967 + AluY SINE Alu 1 291 -20 659 50 29 43 chrX 6397790 6397930 -170576210 + (TA)n Simple_repeat Simple_repeat 1 138 0 2333 93 0 7 chrX 6398677 6398979 -170575161 + AluSx SINE Alu 1 300 -12 200 241 0 74 chrX 6398999 6399053 -170575087 + L2 LINE L2 3264 3313 0 196 213 0 43 chrX 6399253 6399300 -170574840 - L2 LINE L2 -2 3311 3267 915 207 20 15 chrX 6400218 6400421 -170573719 + MER20 DNA MER1_type 16 219 0 360 0 0 0 chrX 6400881 6400921 -170573219 + (CA)n Simple_repeat Simple_repeat 2 41 0 210 356 85 0 chrX 6402260 6402378 -170571762 - L2 LINE L2 -956 2358 2231 374 218 92 0 chrX 6402394 6402481 -170571659 + MER5B DNA MER1_type 1 95 -83 213 272 194 0 chrX 6402899 6403002 -170571138 - L2 LINE L2 -2415 899 777 1327 188 28 0 chrX 6403490 6403708 -170570432 - MER58A DNA MER1_type 0 224 1 1134 154 72 19 chrX 6405272 6405480 -170568660 - MER20 DNA MER1_type 0 219 1 389 268 73 8 chrX 6405633 6405756 -170568384 - MER94 DNA DNA 0 134 4 289 244 61 52 chrX 6406500 6406615 -170567525 - MLT1J LTR MaLR -203 308 193 245 217 0 18 chrX 6406690 6406754 -170567386 - MLT1J LTR MaLR -454 57 6 1012 208 45 32 chrX 6406812 6407033 -170567107 + MER58A DNA MER1_type 1 224 0 2620 225 105 40 chrX 6407037 6407165 -170566975 + L1ME3A LINE L1 5300 5418 -752 2431 90 0 6 chrX 6407165 6407476 -170566664 - AluY SINE Alu 0 311 3 2620 225 105 40 chrX 6407476 6408165 -170565975 + L1ME3A LINE L1 5418 6170 0 212 207 17 52 chrX 6409148 6409206 -170564934 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1299 159 66 19 chrX 6411623 6411881 -170562259 - MER58B DNA MER1_type 0 341 72 232 210 32 0 chrX 6412591 6412653 -170561487 - MIR SINE MIR 0 262 199 1124 231 29 91 chrX 6413195 6413679 -170560461 + LTR16A1 LTR ERVL 4 457 0 198 368 86 8 chrX 6413895 6414012 -170560128 - L3 LINE CR1 -82 1495 1370 270 193 0 0 chrX 6414012 6414069 -170560071 + CT-rich Low_complexity Low_complexity 2 58 0 2814 169 40 20 chrX 6414071 6414614 -170559526 - L1MB7 LINE L1 -15 6169 5616 426 293 96 11 chrX 6414616 6414804 -170559336 - L3 LINE CR1 -193 1384 1181 258 348 33 0 chrX 6415382 6415474 -170558666 + MIR SINE MIR 39 133 -129 359 258 61 42 chrX 6415489 6415674 -170558466 - MER5A DNA MER1_type 0 178 1 210 293 13 13 chrX 6415694 6415769 -170558371 - L3b LINE CR1 -249 1334 1260 1358 159 0 44 chrX 6415894 6416120 -170558020 - MER20 DNA MER1_type -1 218 3 1155 218 9 0 chrX 6416901 6417117 -170557023 - MER20 DNA MER1_type -1 218 1 245 318 231 15 chrX 6417209 6417404 -170556736 + MIR SINE MIR 24 260 -2 1767 219 41 92 chrX 6418576 6419001 -170555139 + L1ME3A LINE L1 5552 5937 -233 1090 175 31 49 chrX 6419001 6419224 -170554916 + MER20 DNA MER1_type 1 219 0 1767 219 41 92 chrX 6419224 6419414 -170554726 + L1ME3A LINE L1 5937 6135 -35 24 0 0 0 chrX 6419941 6419965 -170554175 + AT_rich Low_complexity Low_complexity 1 24 0 200 191 48 0 chrX 6420148 6420190 -170553950 + L2 LINE L2 3255 3298 -15 352 222 122 0 chrX 6420190 6420280 -170553860 + L1PB4 LINE L1 5957 6057 -99 362 204 26 18 chrX 6420281 6420394 -170553746 + L1MA6 LINE L1 6185 6298 -2 203 0 0 36 chrX 6421594 6421622 -170552518 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 235 250 62 0 chrX 6421707 6421771 -170552369 - MER3 DNA MER1_type -134 75 8 1344 213 64 69 chrX 6421773 6422224 -170551916 - L1ME3 LINE L1 -151 6011 5563 198 103 0 0 chrX 6422395 6422424 -170551716 + (TCTCC)n Simple_repeat Simple_repeat 3 31 0 504 48 0 0 chrX 6423260 6423323 -170550817 + (TCC)n Simple_repeat Simple_repeat 3 65 0 403 234 81 18 chrX 6424203 6424314 -170549826 - L2 LINE L2 -13 3300 3183 204 237 0 0 chrX 6424375 6424413 -170549727 + polypurine Low_complexity Low_complexity 4 41 0 198 373 19 32 chrX 6424835 6424993 -170549147 + MIR3 SINE MIR 50 205 -3 22 35 0 0 chrX 6425364 6425393 -170548747 + AT_rich Low_complexity Low_complexity 1 29 0 266 220 0 0 chrX 6426047 6426097 -170548043 - L2 LINE L2 -1 3271 3222 267 267 13 0 chrX 6426314 6426389 -170547751 + L2 LINE L2 2361 2436 -878 181 336 124 18 chrX 6426845 6426958 -170547182 - MIR3 SINE MIR -76 132 8 375 299 15 51 chrX 6427356 6427493 -170546647 + L2 LINE L2 3141 3272 0 185 246 53 0 chrX 6428499 6428556 -170545584 + L2 LINE L2 2357 2416 -898 787 303 90 24 chrX 6428571 6429155 -170544985 + L2 LINE L2 2685 3313 0 242 298 43 32 chrX 6429283 6429377 -170544763 + MER5B DNA MER1_type 84 178 0 921 201 45 0 chrX 6429663 6429842 -170544298 + MER20 DNA MER1_type 33 219 0 523 232 93 7 chrX 6431780 6431931 -170542209 - LTR33 LTR ERVL 0 521 358 26 74 0 0 chrX 6432520 6432574 -170541566 + AT_rich Low_complexity Low_complexity 1 54 0 810 268 70 25 chrX 6433139 6433382 -170540758 - MIR SINE MIR 0 262 9 1219 244 55 45 chrX 6433436 6433834 -170540306 - L1MD2 LINE L1 -2 6357 5956 501 62 0 0 chrX 6434003 6434068 -170540072 + (TA)n Simple_repeat Simple_repeat 2 66 0 337 282 70 76 chrX 6435131 6435531 -170538609 - MLT1H LTR MaLR 0 549 85 1844 98 40 0 chrX 6435961 6436236 -170537904 - L1MA8 LINE L1 -1 6290 6005 1891 195 15 12 chrX 6436641 6436980 -170537160 + MER58B DNA MER1_type 1 340 -1 710 228 168 0 chrX 6439116 6439313 -170534827 + L1MB7 LINE L1 5945 6174 -10 431 212 0 30 chrX 6439652 6439784 -170534356 + L1MB8 LINE L1 6044 6171 -7 327 205 27 98 chrX 6439816 6439928 -170534212 + L1MC4 LINE L1 6600 6703 -1339 3936 167 15 46 chrX 6440470 6441365 -170532775 - L1MB7 LINE L1 -15 6169 5417 675 275 19 88 chrX 6440819 6441179 -170532961 - L1PA3 LINE L1 -330 5825 5506 675 252 0 0 chrX 6441179 6441298 -170532842 - FLAM_A SINE Alu -14 119 1 675 275 19 88 chrX 6441298 6441424 -170532716 - L1PA3 LINE L1 -649 5506 5373 180 300 86 50 chrX 6441945 6442165 -170531975 - L2 LINE L2 -357 2957 2730 405 58 0 0 chrX 6442181 6442233 -170531907 + (TG)n Simple_repeat Simple_repeat 1 52 0 4305 162 17 19 chrX 6443336 6444156 -170529984 + L1MB8 LINE L1 5360 6177 -1 217 118 39 0 chrX 6444600 6444651 -170529489 + (TG)n Simple_repeat Simple_repeat 2 54 0 504 309 55 59 chrX 6444857 6444926 -170529214 - MIR SINE MIR -21 241 173 1706 157 36 4 chrX 6444926 6445207 -170528933 + AluJb SINE Alu 1 290 -22 504 309 55 59 chrX 6445207 6445357 -170528783 - MIR SINE MIR -89 173 23 21 0 0 0 chrX 6446397 6446418 -170527722 + AT_rich Low_complexity Low_complexity 1 21 0 1279 168 91 27 chrX 6447498 6447796 -170526344 - MER33 DNA MER1_type -1 323 7 336 350 109 0 chrX 6448963 6449146 -170524994 + MIR SINE MIR 32 234 -28 1048 130 17 122 chrX 6449482 6449720 -170524420 + MER20 DNA MER1_type 3 215 -4 194 304 25 25 chrX 6449889 6449968 -170524172 + L3 LINE CR1 1496 1574 -3 225 336 71 14 chrX 6450718 6450858 -170523282 + L2 LINE L2 2949 3096 -176 3539 140 29 16 chrX 6450884 6451511 -170522629 - L1MB7 LINE L1 -19 6165 5531 334 68 0 0 chrX 6451520 6451564 -170522576 - MADE1 DNA Mariner -34 46 3 207 0 0 0 chrX 6451747 6451770 -170522370 + (T)n Simple_repeat Simple_repeat 1 23 0 204 40 0 0 chrX 6452837 6452862 -170521278 + (T)n Simple_repeat Simple_repeat 1 25 0 666 232 79 0 chrX 6452864 6453028 -170521112 - MIR SINE MIR -10 252 76 1742 168 9 25 chrX 6453213 6453528 -170520612 - AluJb SINE Alu -2 310 1 234 216 65 22 chrX 6453613 6453752 -170520388 + (TA)n Simple_repeat Simple_repeat 2 146 0 183 184 0 0 chrX 6454152 6454190 -170519950 + (TG)n Simple_repeat Simple_repeat 2 39 0 233 259 19 0 chrX 6454555 6454609 -170519531 + L2 LINE L2 3255 3309 -4 828 250 55 5 chrX 6455517 6455717 -170518423 - MER63A DNA MER1_type 0 210 1 779 235 68 0 chrX 6456096 6456258 -170517882 + MER45A DNA AcHobo 6 178 0 1481 181 29 29 chrX 6456565 6456908 -170517232 - L1MB8 LINE L1 -1 6177 5835 474 318 92 18 chrX 6457319 6457536 -170516604 + MIR SINE MIR 19 251 -11 193 222 44 0 chrX 6457708 6457753 -170516387 + MIR SINE MIR 212 258 -4 263 344 179 0 chrX 6458360 6458511 -170515629 + MIR SINE MIR 20 197 -65 186 288 63 9 chrX 6458788 6458899 -170515241 - L2 LINE L2 -275 3038 2922 299 255 10 146 chrX 6459158 6459350 -170514790 + MER5A DNA MER1_type 6 182 -7 337 188 27 181 chrX 6459360 6459509 -170514631 - MER5B DNA MER1_type -52 126 1 7268 48 0 0 chrX 6459648 6460752 -170513388 - L1PA5 LINE L1 0 6154 5051 3041 43 0 0 chrX 6460753 6461124 -170513016 + L1PA5 LINE L1 4709 5079 -1067 903 231 42 9 chrX 6461899 6462111 -170512029 - MER20 DNA MER1_type 0 219 1 7543 30 0 0 chrX 6462338 6463566 -170510574 + L1PA4 LINE L1 4916 6149 -6 605 225 59 6 chrX 6463756 6463925 -170510215 - MER5B DNA MER1_type 0 178 1 212 324 18 12 chrX 6465675 6465845 -170508295 + (TTA)n Simple_repeat Simple_repeat 3 173 0 468 208 85 19 chrX 6466184 6466290 -170507850 + MER81 DNA DNA 2 114 0 680 235 41 12 chrX 6466300 6466470 -170507670 - MER5B DNA MER1_type 0 178 4 489 279 72 36 chrX 6466704 6466926 -170507214 - L1MC4 LINE L1 -1042 7000 6771 24 0 0 0 chrX 6468734 6468758 -170505382 + AT_rich Low_complexity Low_complexity 1 24 0 237 281 0 0 chrX 6468997 6469093 -170505047 + (CACCAT)n Simple_repeat Simple_repeat 3 98 0 1096 151 80 0 chrX 6470208 6470407 -170503733 + MER20 DNA MER1_type 1 215 -4 789 220 16 0 chrX 6470419 6470605 -170503535 + MER5A DNA MER1_type 1 189 0 684 255 122 57 chrX 6471728 6472081 -170502059 + MLT1H LTR MaLR 1 376 -173 588 217 0 0 chrX 6472768 6472911 -170501229 + L1MB7 LINE L1 6033 6175 -9 1735 142 6 13 chrX 6473539 6473855 -170500285 - L1MB8 LINE L1 -3 6175 5862 197 250 47 31 chrX 6473866 6473930 -170500210 - L2 LINE L2 0 3313 3249 1898 212 44 40 chrX 6474449 6474944 -170499196 - MLT1D LTR MaLR -1 504 8 200 315 7 21 chrX 6475041 6475184 -170498956 + T-rich Low_complexity Low_complexity 2 142 0 485 256 218 31 chrX 6476022 6476311 -170497829 - L2 LINE L2 -4 3309 2967 309 207 0 0 chrX 6476656 6476714 -170497426 + MER3 DNA MER1_type 1 58 -151 29 59 0 15 chrX 6477979 6478003 -170496137 + AT_rich Low_complexity Low_complexity 1 24 -43 345 24 0 0 chrX 6478003 6478045 -170496095 + (TG)n Simple_repeat Simple_repeat 1 42 0 29 59 0 15 chrX 6478045 6478088 -170496052 + AT_rich Low_complexity Low_complexity 24 67 0 2470 75 0 0 chrX 6478323 6478629 -170495511 - AluY SINE Alu 0 311 6 1097 191 48 0 chrX 6479685 6479874 -170494266 - MER58A DNA MER1_type -26 198 1 279 0 0 0 chrX 6480200 6480231 -170493909 + (TTG)n Simple_repeat Simple_repeat 2 32 0 547 320 57 12 chrX 6481420 6481664 -170492476 - MIR SINE MIR -7 255 1 186 198 504 33 chrX 6481722 6481843 -170492297 + MER5A DNA MER1_type 9 186 -3 255 31 0 0 chrX 6481926 6481958 -170492182 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 482 254 9 0 chrX 6482067 6482177 -170491963 + MER94 DNA DNA 21 131 -3 235 305 24 24 chrX 6482306 6482388 -170491752 - L2 LINE L2 -5 3267 3186 208 293 12 49 chrX 6483012 6483094 -170491046 + L2 LINE L2 3194 3272 0 294 336 155 27 chrX 6483812 6484256 -170489884 + L2 LINE L2 1706 2206 -1108 1560 147 34 54 chrX 6484936 6485262 -170488878 + MLT1A2 LTR MaLR 4 339 -57 222 277 53 43 chrX 6485299 6485393 -170488747 - MIR SINE MIR -118 144 50 460 257 198 32 chrX 6485752 6486090 -170488050 - MLT1L LTR MaLR -18 597 204 347 301 29 43 chrX 6486482 6486691 -170487449 - MLT1L LTR MaLR -407 208 3 195 267 0 0 chrX 6486694 6486739 -170487401 - MIR SINE MIR -152 110 66 4293 110 5 3 chrX 6486752 6487372 -170486768 - L1PA15 LINE L1 0 6165 5545 225 0 0 0 chrX 6488449 6488474 -170485666 + (TTA)n Simple_repeat Simple_repeat 3 27 0 19108 30 2 0 chrX 6488474 6491523 -170482617 - L1PA3 LINE L1 -18 6137 3085 2139 102 0 7 chrX 6492343 6492626 -170481514 + AluSp SINE Alu 1 281 -32 543 31 0 0 chrX 6492628 6492693 -170481447 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 2749 171 46 2 chrX 6492696 6493241 -170480899 + L1MB7 LINE L1 5597 6165 -19 2115 50 4 0 chrX 6494689 6494950 -170479190 - L1PA8 LINE L1 -7 6165 5904 870 358 86 49 chrX 6495384 6496486 -170477654 - L3 LINE CR1 -17 1560 418 294 206 0 0 chrX 6496693 6496766 -170477374 + (ATG)n Simple_repeat Simple_repeat 3 75 0 261 0 0 0 chrX 6496768 6496797 -170477343 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 537 16 0 0 chrX 6496796 6496858 -170477282 + (GA)n Simple_repeat Simple_repeat 2 63 0 303 275 12 0 chrX 6496860 6496940 -170477200 - MIR SINE MIR -25 237 157 438 20 0 0 chrX 6497524 6497575 -170476565 + (CA)n Simple_repeat Simple_repeat 1 51 0 208 180 0 33 chrX 6498184 6498245 -170475895 + (TA)n Simple_repeat Simple_repeat 2 60 0 393 75 0 0 chrX 6500024 6500077 -170474063 + (TG)n Simple_repeat Simple_repeat 2 54 0 359 249 20 9 chrX 6500931 6501043 -170473097 - MIR3 SINE MIR -24 184 68 371 300 54 8 chrX 6501100 6501230 -170472910 - MIR SINE MIR -71 191 56 667 266 5 29 chrX 6501590 6501797 -170472343 - L2 LINE L2 0 3313 3112 1381 167 34 30 chrX 6502214 6502483 -170471657 + AluJo SINE Alu 39 308 -4 324 0 0 0 chrX 6504166 6504202 -170469938 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1667 167 32 0 chrX 6504346 6504667 -170469473 - AluJb SINE Alu 0 352 23 1088 215 9 0 chrX 6504708 6504927 -170469213 - MER58A DNA MER1_type -2 222 2 782 161 0 15 chrX 6505026 6505156 -170468984 + FLAM_A SINE Alu 2 129 -4 262 243 105 144 chrX 6506283 6506416 -170467724 + MER5B DNA MER1_type 1 127 -51 2457 82 0 16 chrX 6506416 6506734 -170467406 - AluSq SINE Alu 0 313 1 262 243 105 144 chrX 6506734 6506781 -170467359 + MER5B DNA MER1_type 127 174 -4 977 158 94 10 chrX 6506795 6506997 -170467143 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 6507097 6507118 -170467022 + AT_rich Low_complexity Low_complexity 1 21 0 796 263 11 0 chrX 6507368 6507554 -170466586 - MER5A DNA MER1_type 0 189 2 22 0 0 0 chrX 6509905 6509927 -170464213 + AT_rich Low_complexity Low_complexity 1 22 0 694 245 10 16 chrX 6509927 6510046 -170464094 - L1ME1 LINE L1 -17 6149 6030 183 42 0 0 chrX 6510046 6510070 -170464070 + (CCCCCA)n Simple_repeat Simple_repeat 1 24 0 694 245 10 16 chrX 6510070 6510142 -170463998 - L1ME1 LINE L1 -136 6030 5959 887 296 112 51 chrX 6510178 6510384 -170463756 - L2 LINE L2 -1 3312 3120 2485 48 0 0 chrX 6510384 6510677 -170463463 - AluY SINE Alu -18 293 1 887 296 112 51 chrX 6510677 6511446 -170462694 - L2 LINE L2 -193 3120 2225 36 62 0 0 chrX 6511452 6511516 -170462624 + AT_rich Low_complexity Low_complexity 1 64 0 406 274 32 24 chrX 6511945 6512069 -170462071 - L2 LINE L2 -3 3310 3186 371 369 51 24 chrX 6512119 6512493 -170461647 - L2 LINE L2 -1156 2158 1775 203 300 64 36 chrX 6512575 6512685 -170461455 + MIR SINE MIR 92 204 -58 2031 184 31 33 chrX 6512911 6513367 -170460773 + MSTB2 LTR MaLR 3 457 0 186 270 70 120 chrX 6513423 6513523 -170460617 + L2 LINE L2 3143 3237 -35 285 183 61 17 chrX 6513837 6513952 -170460188 + (TA)n Simple_repeat Simple_repeat 1 120 0 313 247 0 0 chrX 6514395 6514472 -170459668 - MER116 DNA Mariner 0 80 4 37 23 0 0 chrX 6514953 6514997 -170459143 + AT_rich Low_complexity Low_complexity 1 44 0 3323 76 0 0 chrX 6515464 6515897 -170458243 + L1PA7 LINE L1 5716 6148 -6 2748 94 11 3 chrX 6517579 6517951 -170456189 - THE1C LTR MaLR 0 375 1 1840 182 25 37 chrX 6518133 6518539 -170455601 + L1MD2 LINE L1 5956 6356 -3 3483 139 54 27 chrX 6519571 6520203 -170453937 - MER39B LTR ERV1 -4 649 1 430 278 166 12 chrX 6520364 6520533 -170453607 + MIR SINE MIR 58 252 -10 979 190 78 25 chrX 6520693 6520977 -170453163 - L1MA7 LINE L1 -11 6280 5982 191 283 0 0 chrX 6521003 6521056 -170453084 + MIR SINE MIR 207 259 -3 1539 123 73 0 chrX 6521120 6521381 -170452759 + MER7A DNA MER2_type 1 278 -68 270 171 289 0 chrX 6521473 6521549 -170452591 + MER7A DNA MER2_type 249 346 0 250 231 150 75 chrX 6522600 6522773 -170451367 - MIR SINE MIR -42 220 35 21 36 0 0 chrX 6524222 6524250 -170449890 + AT_rich Low_complexity Low_complexity 1 28 0 2476 90 3 0 chrX 6524697 6525009 -170449131 + AluSp SINE Alu 1 313 0 1208 190 9 0 chrX 6525136 6525352 -170448788 - MER20 DNA MER1_type 0 219 2 2600 14 0 0 chrX 6525978 6526262 -170447878 + AluYb8 SINE Alu 12 295 -23 8114 106 39 19 chrX 6526301 6527230 -170446910 - HSMAR2 DNA Mariner -1 1301 338 2340 106 3 6 chrX 6527230 6527542 -170446598 - AluSq SINE Alu -2 311 1 8114 106 39 19 chrX 6527542 6527886 -170446254 - HSMAR2 DNA Mariner -964 338 2 2020 105 0 4 chrX 6528503 6528761 -170445379 + AluSq SINE Alu 39 295 -18 739 174 111 53 chrX 6528769 6528976 -170445164 + MER20 DNA MER1_type 1 219 0 229 29 0 0 chrX 6529276 6529311 -170444829 - L1MA3 LINE L1 0 6305 6271 551 232 7 0 chrX 6530203 6530358 -170443782 + (TG)n Simple_repeat Simple_repeat 2 157 0 25 51 0 0 chrX 6531413 6531452 -170442688 + AT_rich Low_complexity Low_complexity 1 39 0 1141 167 11 0 chrX 6531622 6531808 -170442332 + MER5A DNA MER1_type 1 188 -1 290 343 0 0 chrX 6531814 6531992 -170442148 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 * 341 308 0 0 chrX 6531861 6531994 -170442146 + (CATATA)n Simple_repeat Simple_repeat 6 138 0 589 63 13 0 chrX 6532435 6532514 -170441626 - MADE1 DNA Mariner 0 80 1 191 227 0 0 chrX 6533263 6533307 -170440833 + MIR3 SINE MIR 162 205 -3 986 161 62 0 chrX 6533716 6533908 -170440232 + MER20 DNA MER1_type 2 205 -14 2810 127 8 20 chrX 6534207 6534695 -170439445 + L1MA8 LINE L1 5800 6281 -10 1117 281 200 13 chrX 6534941 6535396 -170438744 - L2 LINE L2 -697 2617 2078 1833 128 55 27 chrX 6535612 6535941 -170438199 + MER1B DNA MER1_type 1 338 -1 2131 72 17 3 chrX 6536172 6536464 -170437676 - L1PA13 LINE L1 0 6163 5868 703 65 0 0 chrX 6536464 6536557 -170437583 + L1PA13 LINE L1 5788 5880 -283 234 350 77 26 chrX 6536688 6536805 -170437335 - MER5A DNA MER1_type -5 184 62 709 309 100 54 chrX 6537321 6537852 -170436288 - L2 LINE L2 -1 3312 2735 666 243 51 6 chrX 6537902 6538079 -170436061 + MIR SINE MIR 9 193 -69 532 397 28 14 chrX 6538120 6538410 -170435730 - L2 LINE L2 -610 2704 2411 369 333 24 19 chrX 6538514 6538721 -170435419 - L2 LINE L2 -908 2406 2199 22 0 0 0 chrX 6539813 6539835 -170434305 + AT_rich Low_complexity Low_complexity 1 22 0 2647 159 98 23 chrX 6540525 6540944 -170433196 - L1MB7 LINE L1 -279 5905 5428 1890 148 0 30 chrX 6540944 6541242 -170432898 - AluJb SINE Alu -10 302 14 2647 159 98 23 chrX 6541242 6541473 -170432667 - L1MB7 LINE L1 -756 5428 5216 180 295 62 54 chrX 6542339 6542451 -170431689 - MIR3 SINE MIR -14 194 82 509 180 86 23 chrX 6544537 6544665 -170429475 + MIR SINE MIR 127 262 0 433 100 50 0 chrX 6545745 6545825 -170428315 - L1PB4 LINE L1 0 6156 6073 302 213 0 0 chrX 6545952 6546013 -170428127 - MER20 DNA MER1_type -157 62 2 2220 104 7 10 chrX 6546039 6546347 -170427793 + AluSc SINE Alu 1 307 -2 2333 107 0 0 chrX 6546735 6547034 -170427106 + AluSx SINE Alu 1 299 -13 357 333 57 14 chrX 6547236 6547377 -170426763 - MIR SINE MIR -108 154 8 1055 172 29 10 chrX 6548854 6549058 -170425082 + MER3 DNA MER1_type 1 208 -1 286 287 147 13 chrX 6549269 6549426 -170424714 + L2 LINE L2 3120 3297 -16 21 0 0 0 chrX 6550729 6550750 -170423390 + AT_rich Low_complexity Low_complexity 1 21 0 250 304 155 41 chrX 6550783 6550977 -170423163 - MIR SINE MIR -34 228 13 198 368 53 18 chrX 6551213 6551327 -170422813 - MIR SINE MIR -110 152 35 442 324 52 6 chrX 6553044 6553217 -170420923 - MIR SINE MIR -10 252 72 508 252 19 56 chrX 6553634 6553860 -170420280 - MIR SINE MIR -50 212 2 226 330 0 50 chrX 6553907 6554007 -170420133 - MIR3 SINE MIR -2 206 112 274 296 28 0 chrX 6554353 6554424 -170419716 + polypurine Low_complexity Low_complexity 4 76 0 187 173 200 0 chrX 6555457 6555532 -170418608 - L2 LINE L2 -785 2529 2440 392 302 7 50 chrX 6556012 6556151 -170417989 + MER5A DNA MER1_type 29 161 -28 203 0 37 0 chrX 6557259 6557286 -170416854 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chrX 6557396 6557421 -170416719 + AT_rich Low_complexity Low_complexity 1 25 0 467 235 0 0 chrX 6558995 6559093 -170415047 + MIR SINE MIR 96 193 -69 220 309 0 15 chrX 6560770 6560838 -170413302 + L2 LINE L2 3246 3312 -1 2224 111 0 0 chrX 6561122 6561420 -170412720 - AluSg SINE Alu -12 298 1 2187 148 11 3 chrX 6562263 6562628 -170411512 + L1MB7 LINE L1 5798 6165 -19 180 171 29 0 chrX 6562817 6562852 -170411288 - MIR SINE MIR -34 228 193 * 318 311 211 36 chrX 6562836 6563248 -170410892 - L2 LINE L2 -7 3306 2823 1065 192 32 46 chrX 6564029 6564310 -170409830 - L1MB8 LINE L1 -3 6175 5899 696 188 111 68 chrX 6564341 6564548 -170409592 - MER20 DNA MER1_type -1 218 3 771 41 0 0 chrX 6564824 6564921 -170409219 + L1PB1 LINE L1 6053 6149 -2 1269 198 5 0 chrX 6566171 6566388 -170407752 + MER20 DNA MER1_type 2 219 0 1025 158 10 46 chrX 6566773 6566969 -170407171 + MER5A DNA MER1_type 1 189 0 194 278 41 82 chrX 6566974 6567071 -170407069 - MER5A DNA MER1_type -24 165 73 2062 177 64 48 chrX 6567163 6567660 -170406480 - MLT1D LTR MaLR 0 505 1 192 280 20 110 chrX 6567702 6567802 -170406338 - L3 LINE CR1 -25 1552 1462 * 265 349 31 23 chrX 6567791 6567920 -170406220 + L2 LINE L2 3177 3306 -7 321 274 28 28 chrX 6568007 6568113 -170406027 + MIR SINE MIR 110 215 -47 353 274 0 19 chrX 6568284 6568390 -170405750 - MER5B DNA MER1_type 0 178 75 368 290 32 24 chrX 6568390 6568514 -170405626 - MER5B DNA MER1_type 0 178 54 181 302 16 16 chrX 6568701 6568764 -170405376 + L2 LINE L2 3204 3266 -6 458 294 18 0 chrX 6569476 6569639 -170404501 - L1MC4a LINE L1 -1911 5897 5732 41 21 0 0 chrX 6569668 6569716 -170404424 + AT_rich Low_complexity Low_complexity 1 48 0 1770 226 57 11 chrX 6569723 6570201 -170403939 - L1ME3A LINE L1 -20 6150 5651 301 239 92 0 chrX 6570220 6570329 -170403811 - L1MC4a LINE L1 -2081 5727 5609 1068 162 0 6 chrX 6570359 6570526 -170403614 - FRAM SINE Alu -10 166 1 1100 180 33 0 chrX 6570972 6571183 -170402957 - MER20 DNA MER1_type 0 219 2 681 237 60 44 chrX 6571184 6571433 -170402707 + MIR SINE MIR 8 260 -2 22 0 0 0 chrX 6571442 6571464 -170402676 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 6572260 6572284 -170401856 + AT_rich Low_complexity Low_complexity 1 24 0 1780 202 81 28 chrX 6572516 6572983 -170401157 - MLT1D LTR MaLR -7 535 4 23 0 0 0 chrX 6573402 6573425 -170400715 + AT_rich Low_complexity Low_complexity 1 23 0 2861 147 31 13 chrX 6573701 6574245 -170399895 + L1MB7 LINE L1 5609 6162 -22 1619 66 14 0 chrX 6576290 6576503 -170397637 + L1PA10 LINE L1 5952 6167 -1 1061 153 6 0 chrX 6576626 6576803 -170397337 - MER58A DNA MER1_type -2 222 45 828 296 24 8 chrX 6577034 6577287 -170396853 + MIR SINE MIR 3 259 -3 34 0 0 0 chrX 6577806 6577840 -170396300 + AT_rich Low_complexity Low_complexity 1 34 0 385 277 106 0 chrX 6578110 6578251 -170395889 - MIR SINE MIR -102 160 5 605 234 10 83 chrX 6578763 6578869 -170395271 - MER5B DNA MER1_type 0 178 91 819 255 5 0 chrX 6578869 6579077 -170395063 - MER3 DNA MER1_type 0 209 1 605 234 10 83 chrX 6579077 6579162 -170394978 - MER5B DNA MER1_type -87 91 1 646 260 6 40 chrX 6580900 6581073 -170393067 + MIR SINE MIR 5 171 -91 322 287 64 37 chrX 6582180 6582368 -170391772 - MLT1H LTR MaLR -249 300 108 684 264 0 0 chrX 6582454 6582617 -170391523 - MLT1J1 LTR MaLR -268 178 16 197 316 26 26 chrX 6582827 6582903 -170391237 - L2 LINE L2 -527 2787 2712 844 287 0 0 chrX 6583641 6583836 -170390304 + MIR SINE MIR 51 245 -17 315 49 0 0 chrX 6585011 6585052 -170389088 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 456 99 0 0 chrX 6585051 6585122 -170389018 + (CA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chrX 6585339 6585360 -170388780 + AT_rich Low_complexity Low_complexity 1 21 0 1036 224 25 8 chrX 6586105 6586342 -170387798 + MIR SINE MIR 11 251 -11 720 196 27 91 chrX 6587010 6587229 -170386911 - MER58A DNA MER1_type 0 224 20 654 263 0 31 chrX 6587254 6587414 -170386726 - MIR SINE MIR -107 155 1 203 323 140 11 chrX 6587430 6587616 -170386524 + L2 LINE L2 2953 3162 -151 2337 175 21 14 chrX 6587669 6588092 -170386048 - MSTB LTR MaLR 0 426 1 222 336 35 0 chrX 6588193 6588306 -170385834 - MIR SINE MIR -56 206 90 208 286 20 92 chrX 6588345 6588443 -170385697 - MER5B DNA MER1_type 0 178 88 23 68 0 0 chrX 6589059 6589103 -170385037 + AT_rich Low_complexity Low_complexity 1 44 0 931 219 10 0 chrX 6589170 6589371 -170384769 - MER20 DNA MER1_type 0 219 17 406 320 0 0 chrX 6590082 6590182 -170383958 - L2 LINE L2 -13 3300 3201 1168 214 72 3 chrX 6590292 6590582 -170383558 + MER58B DNA MER1_type 1 310 -31 1843 175 140 37 chrX 6590809 6591267 -170382873 - MLT1D LTR MaLR 0 505 1 261 226 19 0 chrX 6591685 6591738 -170382402 - MER5B DNA MER1_type 0 178 125 3730 80 11 7 chrX 6591741 6592280 -170381860 + L1MA1 LINE L1 5762 6302 0 441 324 161 51 chrX 6592660 6593514 -170380626 + L2 LINE L2 2342 3271 -1 1017 219 23 5 chrX 6593591 6593806 -170380334 + MER58A DNA MER1_type 5 223 -1 21 0 0 0 chrX 6593967 6593988 -170380152 + AT_rich Low_complexity Low_complexity 1 21 0 348 306 69 12 chrX 6594356 6594529 -170379611 + L2 LINE L2 3019 3201 -112 2266 104 3 0 chrX 6594718 6595015 -170379125 - AluSq SINE Alu -13 300 3 326 354 0 39 chrX 6595497 6595627 -170378513 + MIR SINE MIR 13 137 -125 183 146 0 0 chrX 6595685 6595726 -170378414 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 735 145 88 36 chrX 6595800 6595993 -170378147 + L1MA5A LINE L1 6093 6295 -2 198 0 0 0 chrX 6596386 6596408 -170377732 + (T)n Simple_repeat Simple_repeat 1 22 0 2266 107 0 17 chrX 6597206 6597505 -170376635 - AluSc SINE Alu -15 294 1 191 204 20 0 chrX 6597784 6597833 -170376307 + (CATATA)n Simple_repeat Simple_repeat 1 50 0 903 182 11 32 chrX 6597842 6598029 -170376111 + MER20 DNA MER1_type 3 185 -34 183 339 25 25 chrX 6598120 6598238 -170375902 + MIR3 SINE MIR 9 126 -82 1078 300 96 43 chrX 6599641 6600228 -170373912 - L2 LINE L2 -1630 1684 1057 2523 174 22 24 chrX 6600228 6600734 -170373406 + MLT1D LTR MaLR 1 505 0 1078 300 96 43 chrX 6600734 6600800 -170373340 - L2 LINE L2 -2257 1057 996 542 242 150 55 chrX 6601402 6601695 -170372445 + L1MC/D LINE L1 5282 5596 -669 6278 91 3 0 chrX 6601695 6602745 -170371395 - L1PB1 LINE L1 -1 6150 5104 542 242 150 55 chrX 6602745 6602822 -170371318 + L1MC/D LINE L1 5596 5664 -601 474 192 20 68 chrX 6602843 6602989 -170371151 - MLT1J2 LTR MaLR -48 402 264 825 196 131 5 chrX 6603458 6603657 -170370483 + MER58A DNA MER1_type 1 224 0 297 279 0 0 chrX 6604802 6604888 -170369252 + MIR SINE MIR 163 248 -14 207 100 0 0 chrX 6604895 6604925 -170369215 + (CAT)n Simple_repeat Simple_repeat 1 30 0 226 210 0 65 chrX 6605304 6605366 -170368774 + MER112 DNA MER1_type 17 74 -186 1005 211 33 9 chrX 6606710 6606923 -170367217 + MER58A DNA MER1_type 6 223 -1 1681 144 24 94 chrX 6607093 6607467 -170366673 - Tigger3(Golem) DNA MER2_type -1 3028 1 232 273 81 20 chrX 6607686 6607785 -170366355 - MLT1L LTR MaLR -366 249 145 242 242 0 76 chrX 6608005 6608071 -170366069 + L2 LINE L2 3206 3266 -6 426 39 0 0 chrX 6609541 6609593 -170364547 + (CA)n Simple_repeat Simple_repeat 2 53 0 1722 140 15 4 chrX 6610075 6610165 -170363975 - AluJb SINE Alu -44 268 181 207 0 0 0 chrX 6610165 6610188 -170363952 + (CACCC)n Simple_repeat Simple_repeat 3 25 0 1722 140 15 4 chrX 6610188 6610362 -170363778 - AluJb SINE Alu -131 181 1 248 357 83 0 chrX 6610387 6610471 -170363669 + L2 LINE L2 3133 3223 -49 21 36 0 0 chrX 6611331 6611359 -170362781 + AT_rich Low_complexity Low_complexity 1 28 0 322 282 0 0 chrX 6611771 6611849 -170362291 - L3 LINE CR1 -64 1513 1436 802 176 10 137 chrX 6611864 6612171 -170361969 - L1MC3 LINE L1 -15 7770 7503 614 197 131 27 chrX 6612188 6612371 -170361769 - MLT1F1 LTR MaLR -50 517 316 291 285 90 50 chrX 6612519 6612719 -170361421 - L3 LINE CR1 -223 1354 1147 980 211 33 5 chrX 6613057 6613270 -170360870 + MER20 DNA MER1_type 1 219 0 378 215 82 30 chrX 6613637 6613772 -170360368 - Charlie8 DNA MER1_type -2220 197 56 337 302 31 16 chrX 6614322 6614451 -170359689 + MIR SINE MIR 49 179 -83 191 299 58 0 chrX 6614550 6614637 -170359503 + MIR SINE MIR 54 145 -63 2497 102 19 13 chrX 6614680 6615053 -170359087 + THE1C LTR MaLR 1 375 0 6386 98 42 59 chrX 6615054 6616137 -170358003 + THE1C-int LTR MaLR 2 1066 -514 1707 177 9 14 chrX 6616132 6616482 -170357658 - L1MC2 LINE L1 -408 5936 5589 * 219 36 0 0 chrX 6616604 6616632 -170357508 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 2271 99 0 37 chrX 6618462 6618786 -170355354 - AluSx SINE Alu 0 312 1 1655 160 57 3 chrX 6618827 6619159 -170354981 + L1MA4 LINE L1 5945 6294 -6 189 314 161 8 chrX 6619178 6619296 -170354844 - MIR SINE MIR -2 260 125 1075 159 29 10 chrX 6620142 6620349 -170353791 + L1MC1 LINE L1 6113 6323 -10 420 222 21 14 chrX 6620370 6620514 -170353626 + (CATA)n Simple_repeat Simple_repeat 1 145 0 2395 81 0 13 chrX 6620629 6620936 -170353204 + AluSc SINE Alu 1 303 -6 207 100 0 0 chrX 6623311 6623341 -170350799 + (A)n Simple_repeat Simple_repeat 1 30 0 3251 48 22 0 chrX 6624706 6625123 -170349017 + L1PA5 LINE L1 5728 6153 -1 609 242 12 6 chrX 6625823 6625984 -170348156 + L2 LINE L2 678 839 -2475 204 247 65 13 chrX 6626059 6626136 -170348004 - MIR SINE MIR -49 213 133 299 272 22 122 chrX 6626497 6626677 -170347463 - MIR SINE MIR -98 164 3 514 244 34 28 chrX 6627210 6627386 -170346754 + MER5B DNA MER1_type 2 178 0 620 201 169 13 chrX 6627489 6627643 -170346497 + MER5A DNA MER1_type 9 186 -3 2205 89 0 0 chrX 6627678 6627948 -170346192 + AluSg SINE Alu 36 305 -5 3659 30 0 2 chrX 6628214 6628650 -170345490 - L1PA4 LINE L1 -3 6152 5718 180 174 23 198 chrX 6629320 6629406 -170344734 + MER5B DNA MER1_type 64 134 -44 213 39 0 0 chrX 6629685 6629711 -170344429 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2023 103 0 0 chrX 6629715 6629977 -170344163 - AluSx SINE Alu -29 283 22 940 275 0 32 chrX 6631469 6631720 -170342420 + MIR SINE MIR 18 260 -2 189 371 8 24 chrX 6632222 6632346 -170341794 + L2 LINE L2 2362 2483 -831 236 299 76 42 chrX 6632540 6632684 -170341456 + MLT1K LTR MaLR 125 273 -315 356 270 88 22 chrX 6632746 6632883 -170341257 + MLT1K LTR MaLR 401 546 -42 1821 262 135 34 chrX 6633175 6634225 -170339915 - L2 LINE L2 -1 3312 2148 2485 59 0 26 chrX 6634566 6634871 -170339269 + AluY SINE Alu 1 297 -14 294 356 32 23 chrX 6635816 6635994 -170338146 + MIR SINE MIR 17 196 -66 239 208 42 0 chrX 6636392 6636440 -170337700 + L2 LINE L2 3189 3238 -75 286 290 9 37 chrX 6638145 6638252 -170335888 - L2 LINE L2 -8 3305 3202 733 304 30 23 chrX 6639578 6639844 -170334296 - L2 LINE L2 -4 3309 3042 450 333 117 9 chrX 6639904 6640135 -170334005 - MIR SINE MIR 0 262 7 456 221 77 61 chrX 6640150 6640331 -170333809 + MER5A DNA MER1_type 4 187 -2 191 365 65 9 chrX 6641116 6641223 -170332917 - MIR3 SINE MIR -4 204 92 * 195 348 43 0 chrX 6641208 6641277 -170332863 - MIR SINE MIR -171 91 20 516 260 58 98 chrX 6641509 6641905 -170332235 - L2 LINE L2 0 3313 2934 185 218 128 64 chrX 6642292 6642370 -170331770 - L2 LINE L2 -2 3311 3229 489 272 25 4 chrX 6642395 6642606 -170331534 + MLT1J2 LTR MaLR 35 332 -118 192 307 86 36 chrX 6642738 6642878 -170331262 - MIR SINE MIR -51 211 65 181 370 14 83 chrX 6643259 6643535 -170330605 - L2 LINE L2 -12 3260 3004 246 239 98 65 chrX 6643541 6643725 -170330415 + MARNA DNA Mariner 364 553 -33 249 182 0 0 chrX 6644387 6644442 -170329698 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 206 303 181 61 chrX 6645199 6645559 -170328581 - L2 LINE L2 -1218 2096 1694 482 293 103 43 chrX 6645563 6646047 -170328093 - L1ME4a LINE L1 -16 6105 5593 1265 161 5 27 chrX 6646112 6646335 -170327805 - MER20 DNA MER1_type -1 218 1 180 125 0 0 chrX 6647990 6648022 -170326118 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 182 229 0 0 chrX 6648181 6648216 -170325924 - MIR SINE MIR -111 151 117 229 324 0 0 chrX 6648626 6648700 -170325440 + L2 LINE L2 2991 3064 -208 1131 88 6 17 chrX 6648905 6649086 -170325054 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 2450 54 0 13 chrX 6649091 6649389 -170324751 - AluY SINE Alu -17 294 1 252 339 8 33 chrX 6649886 6650007 -170324133 - MIR SINE MIR -81 181 64 1227 128 13 66 chrX 6650015 6650241 -170323899 + MER20 DNA MER1_type 6 219 0 449 260 0 68 chrX 6650384 6650530 -170323610 - MER91B DNA MER1_type -53 137 2 250 316 71 0 chrX 6650530 6650628 -170323512 + MIR SINE MIR 81 185 -77 783 93 0 0 chrX 6650631 6650749 -170323391 + (TA)n Simple_repeat Simple_repeat 2 119 0 364 216 20 0 chrX 6654027 6654129 -170320011 + (TA)n Simple_repeat Simple_repeat 2 105 0 225 98 0 0 chrX 6654135 6654176 -170319964 + LTR66 LTR ERVL 399 439 -171 320 284 42 0 chrX 6654763 6654858 -170319282 - L2 LINE L2 0 3313 3215 183 259 179 36 chrX 6655358 6655470 -170318670 + MIR SINE MIR 79 206 -56 577 252 57 102 chrX 6656887 6657022 -170317118 - L1ME4a LINE L1 -7 6114 5974 1543 195 68 0 chrX 6657022 6657314 -170316826 - AluJb SINE Alu 0 312 1 577 252 57 102 chrX 6657314 6657495 -170316645 - L1ME4a LINE L1 -147 5974 5827 1057 100 0 0 chrX 6657495 6657635 -170316505 + L1PB1 LINE L1 6012 6151 0 577 252 57 102 chrX 6657635 6657825 -170316315 - L1ME4a LINE L1 -294 5827 5630 731 258 48 22 chrX 6657856 6658255 -170315885 - L1MC5 LINE L1 -241 7720 7252 475 237 168 56 chrX 6658396 6658628 -170315512 + MLT1K LTR MaLR 331 588 0 813 148 0 37 chrX 6658651 6658786 -170315354 - FLAM_C SINE Alu -13 130 1 408 257 67 0 chrX 6659075 6659180 -170314960 - MIR SINE MIR -27 235 124 1796 156 35 0 chrX 6659253 6659541 -170314599 - MER7A DNA MER2_type -48 298 3 402 21 0 0 chrX 6659541 6659588 -170314552 + (TG)n Simple_repeat Simple_repeat 2 48 0 345 251 128 56 chrX 6659741 6659936 -170314204 + L1ME4a LINE L1 5910 6118 -3 1608 255 68 34 chrX 6661262 6661736 -170312404 - LTR16C LTR ERVL -1 490 1 1693 161 58 10 chrX 6662162 6662454 -170311686 + AluJb SINE Alu 1 306 -6 219 200 67 67 chrX 6662732 6662822 -170311318 - L2 LINE L2 -41 3231 3142 357 326 34 71 chrX 6663635 6663929 -170310211 - L2 LINE L2 0 3272 2990 384 181 0 0 chrX 6664859 6664942 -170309198 + (TA)n Simple_repeat Simple_repeat 1 83 0 407 36 107 0 chrX 6665513 6665569 -170308571 - MER58A DNA MER1_type -6 218 157 328 305 102 0 chrX 6665585 6665713 -170308427 + MER96 DNA MER1_type? 35 175 0 695 202 8 0 chrX 6665722 6665846 -170308294 - MER58A DNA MER1_type 0 161 37 828 337 121 27 chrX 6665866 6666782 -170307358 + L2 LINE L2 1612 2613 -701 23 33 0 0 chrX 6667273 6667303 -170306837 + AT_rich Low_complexity Low_complexity 1 30 0 371 295 72 29 chrX 6668781 6668920 -170305220 + MER5B DNA MER1_type 34 178 0 843 174 99 0 chrX 6668954 6669115 -170305025 + MER20 DNA MER1_type 40 216 -3 2275 107 0 0 chrX 6669476 6669774 -170304366 + AluSg SINE Alu 7 304 -6 1716 124 12 0 chrX 6669985 6670227 -170303913 + L1PA15 LINE L1 5917 6161 -4 2079 86 0 63 chrX 6670232 6670578 -170303562 + AluY SINE Alu 1 327 0 467 225 254 12 chrX 6671800 6671969 -170302171 + MIR SINE MIR 3 212 -50 373 234 68 27 chrX 6671984 6672148 -170301992 - L1MD1 LINE L1 -322 5799 5660 454 244 30 31 chrX 6673363 6673690 -170300450 - L1MD1 LINE L1 -219 5951 5654 919 222 6 11 chrX 6673697 6673877 -170300263 + MER5A DNA MER1_type 1 179 -10 258 309 79 8 chrX 6673903 6674029 -170300111 - L1MD1 LINE L1 -514 5656 5522 756 242 22 36 chrX 6675293 6675516 -170298624 + L1ME3 LINE L1 5940 6159 -3 524 320 69 5 chrX 6675709 6675912 -170298228 - MIR SINE MIR 0 262 47 2551 112 19 16 chrX 6675938 6676312 -170297828 - THE1C LTR MaLR 0 375 1 232 244 0 0 chrX 6676315 6676360 -170297780 + Tigger6 DNA MER2_type 1536 1580 -17 513 0 0 0 chrX 6676388 6676445 -170297695 + (TG)n Simple_repeat Simple_repeat 2 58 0 2170 120 27 0 chrX 6676928 6677228 -170296912 + AluSx SINE Alu 5 312 0 628 297 68 4 chrX 6677276 6677512 -170296628 + MIR SINE MIR 2 252 -10 278 273 40 30 chrX 6677659 6677758 -170296382 + Charlie2 DNA MER1_type 1 100 -2762 239 325 61 9 chrX 6678722 6678836 -170295304 + MIR3 SINE MIR 44 163 -45 187 189 54 0 chrX 6678847 6678884 -170295256 + L2 LINE L2 3265 3303 -10 247 365 126 25 chrX 6678910 6679356 -170294784 + L2 LINE L2 2175 2665 -649 1003 180 62 24 chrX 6679631 6679842 -170294298 - MER20 DNA MER1_type 0 219 1 221 191 21 0 chrX 6680350 6680397 -170293743 + (TGAA)n Simple_repeat Simple_repeat 4 51 0 896 145 8 8 chrX 6681595 6681726 -170292414 - FLAM_C SINE Alu -2 131 1 2050 167 57 18 chrX 6682894 6683277 -170290863 + MER77 LTR ERV1 2 399 -206 1971 144 0 10 chrX 6683545 6683843 -170290297 - AluSx SINE Alu -17 295 1 2408 49 3 29 chrX 6685621 6685928 -170288212 - AluY SINE Alu -12 299 1 2151 113 3 0 chrX 6685939 6686239 -170287901 - AluSg SINE Alu -9 301 1 39 22 0 0 chrX 6687190 6687236 -170286904 + AT_rich Low_complexity Low_complexity 1 46 0 3193 148 40 4 chrX 6687770 6688290 -170285850 + L1PB4 LINE L1 5614 6152 -4 243 0 0 0 chrX 6688656 6688683 -170285457 + (CA)n Simple_repeat Simple_repeat 1 27 0 1540 138 5 0 chrX 6690770 6690987 -170283153 + AluSx SINE Alu 1 218 -94 7589 52 9 0 chrX 6691113 6692783 -170281357 - L1PA7 LINE L1 0 6154 4477 3452 112 0 0 chrX 6692785 6693283 -170280857 - L1PA7 LINE L1 -2419 3727 3230 8390 14 0 0 chrX 6693287 6694679 -170279461 - L1PA2 LINE L1 -2 6153 4762 6842 37 0 0 chrX 6694679 6695498 -170278642 + L1P LINE L1 1636 2454 -3692 1459 117 4 0 chrX 6695496 6695726 -170278414 - L1PA7 LINE L1 -2919 3227 2997 * 1363 96 8 108 chrX 6696107 6696357 -170277783 - L1PA15 LINE L1 -6 6159 5935 383 268 168 35 chrX 6698866 6699235 -170274905 - L2 LINE L2 -2025 1289 872 442 251 45 8 chrX 6699253 6699380 -170274760 + MIR SINE MIR 2 126 -82 1334 180 0 16 chrX 6699623 6699868 -170274272 + AluJo SINE Alu 68 308 -4 824 216 75 9 chrX 6700073 6700286 -170273854 - MER96B DNA MER1_type? -1 416 190 880 102 8 0 chrX 6700326 6700444 -170273696 - AluJb SINE Alu -20 292 174 25 0 0 0 chrX 6700603 6700628 -170273512 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chrX 6701158 6701193 -170272947 + AT_rich Low_complexity Low_complexity 1 35 0 400 156 44 44 chrX 6703797 6703977 -170270163 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 208 222 22 0 chrX 6703978 6704023 -170270117 + (TG)n Simple_repeat Simple_repeat 2 47 0 210 259 0 0 chrX 6704473 6704527 -170269613 + MIR SINE MIR 209 262 0 395 174 65 11 chrX 6705192 6705284 -170268856 - MER5A DNA MER1_type -1 188 92 731 228 0 0 chrX 6705306 6705442 -170268698 + MER45A DNA AcHobo 43 178 0 365 253 32 0 chrX 6705442 6705537 -170268603 - MER5A DNA MER1_type -90 99 2 421 307 113 18 chrX 6707606 6707810 -170266330 + MIR SINE MIR 21 247 -15 276 283 145 7 chrX 6707810 6707955 -170266185 + MIR SINE MIR 75 239 -23 214 250 239 0 chrX 6707972 6708060 -170266080 + MIR SINE MIR 147 255 -7 1078 167 78 29 chrX 6708231 6708613 -170265527 - MLT1D LTR MaLR -55 450 2 21 0 0 0 chrX 6709953 6709974 -170264166 + AT_rich Low_complexity Low_complexity 1 21 0 489 215 35 157 chrX 6710352 6710664 -170263476 - MLT1J2 LTR MaLR 0 450 177 1887 64 0 9 chrX 6710676 6710909 -170263231 - AluY SINE Alu -1 310 80 556 230 99 6 chrX 6710927 6711088 -170263052 - MLT1J2 LTR MaLR -274 176 1 29 47 0 0 chrX 6713066 6713109 -170261031 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chrX 6713452 6713487 -170260653 + AT_rich Low_complexity Low_complexity 1 35 0 2148 118 3 0 chrX 6714543 6714840 -170259300 - AluSx SINE Alu -14 298 1 287 188 25 88 chrX 6715828 6715908 -170258232 - MER81 DNA DNA 0 114 40 622 126 58 211 chrX 6715987 6716210 -170257930 - MER53 DNA DNA 0 189 1 282 320 103 0 chrX 6716933 6717030 -170257110 + L2 LINE L2 3163 3269 -3 421 297 103 26 chrX 6717444 6717640 -170256500 + MIR SINE MIR 41 250 -12 345 324 9 0 chrX 6717783 6717891 -170256249 - MIR SINE MIR -117 145 37 264 127 0 0 chrX 6718605 6718660 -170255480 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 688 252 13 0 chrX 6718831 6718982 -170255158 + MER45A DNA AcHobo 26 178 0 225 235 0 44 chrX 6719029 6719097 -170255043 - MIR SINE MIR -57 151 87 2343 147 28 0 chrX 6719352 6719707 -170254433 + MLT1A1 LTR MaLR 1 365 0 1906 162 143 19 chrX 6720360 6720536 -170253604 + MLT1C LTR MaLR 1 154 -313 273 89 0 0 chrX 6720536 6720581 -170253559 + (CA)n Simple_repeat Simple_repeat 1 45 0 1906 162 143 19 chrX 6720581 6720817 -170253323 + MLT1C LTR MaLR 154 464 -3 880 199 21 27 chrX 6721298 6721484 -170252656 + MER5A DNA MER1_type 2 186 -3 2666 39 3 0 chrX 6722110 6722417 -170251723 - AluY SINE Alu -3 308 1 2449 142 43 10 chrX 6722440 6722855 -170251285 - L1MB8 LINE L1 -19 6159 5731 1917 165 0 0 chrX 6723253 6723544 -170250596 + AluJb SINE Alu 1 291 -21 1745 84 51 8 chrX 6724580 6724817 -170249323 - L1PA13 LINE L1 -14 6149 5903 21 0 0 0 chrX 6724880 6724901 -170249239 + AT_rich Low_complexity Low_complexity 1 21 0 1733 122 0 8 chrX 6725082 6725320 -170248820 + AluSq SINE Alu 27 262 -51 463 311 97 5 chrX 6725647 6725843 -170248297 - MIR SINE MIR -2 260 47 2496 116 31 6 chrX 6726167 6726521 -170247619 - THE1B LTR MaLR -1 363 1 2368 88 0 3 chrX 6727101 6727396 -170246744 + AluSg SINE Alu 1 294 -16 3507 56 16 70 chrX 6727462 6727946 -170246194 - L1PA7 LINE L1 -10 6144 5687 180 255 109 76 chrX 6730773 6730957 -170243183 - L2 LINE L2 -14 3258 3069 527 232 90 19 chrX 6731594 6731749 -170242391 + MER5A DNA MER1_type 23 188 -1 699 242 142 13 chrX 6731933 6732377 -170241763 + MLT1G LTR MaLR 32 576 -14 1790 202 83 83 chrX 6733024 6733544 -170240596 + MLT2B1 LTR ERVL 1 520 0 429 211 56 0 chrX 6734435 6734525 -170239615 - MER20 DNA MER1_type 0 219 125 495 283 92 0 chrX 6734719 6734903 -170239237 + MIR SINE MIR 14 214 -48 826 70 0 0 chrX 6734931 6735031 -170239109 + HY3 scRNA scRNA 1 100 -1 555 169 7 110 chrX 6735214 6735350 -170238790 + MER58B DNA MER1_type 220 341 0 226 125 0 0 chrX 6735399 6735431 -170238709 - MER58A DNA MER1_type -39 68 37 242 302 194 35 chrX 6735460 6735718 -170238422 - L3 LINE CR1 -331 1246 948 263 377 70 15 chrX 6735811 6736010 -170238130 - L3 LINE CR1 -1125 452 243 320 232 182 20 chrX 6737640 6737739 -170236401 + MIR SINE MIR 61 175 -87 1100 151 98 34 chrX 6738161 6738366 -170235774 - MER20 DNA MER1_type -1 218 1 393 270 119 19 chrX 6738419 6738578 -170235562 - MIR SINE MIR -53 209 35 1640 156 32 7 chrX 6738637 6738919 -170235221 - AluJb SINE Alu -23 289 1 225 0 0 0 chrX 6739744 6739769 -170234371 + (CCG)n Simple_repeat Simple_repeat 2 26 0 925 195 127 0 chrX 6740259 6740495 -170233645 + Charlie4a DNA MER1_type 74 339 -169 820 284 30 30 chrX 6740525 6740828 -170233312 + LTR16A LTR ERVL 57 359 -91 642 216 51 81 chrX 6743351 6743587 -170230553 - L2 LINE L2 -1 3312 3084 399 301 168 0 chrX 6743609 6743752 -170230388 + MER5A DNA MER1_type 18 184 -5 651 301 119 10 chrX 6743763 6744086 -170230054 - L2 LINE L2 -244 3069 2711 2144 128 0 0 chrX 6744561 6744851 -170229289 + AluSg SINE Alu 1 290 -20 1062 221 9 27 chrX 6745240 6745462 -170228678 + MER20 DNA MER1_type 1 218 -1 280 339 67 0 chrX 6746253 6746433 -170227707 - L2 LINE L2 -934 2380 2189 940 261 25 40 chrX 6746942 6747340 -170226800 - L1MC4a LINE L1 -1959 5849 5461 2264 153 51 36 chrX 6747614 6748064 -170226076 + MSTB2 LTR MaLR 1 457 0 323 266 94 66 chrX 6748143 6748225 -170225915 - L1MC4a LINE L1 -1901 4245 4167 2387 87 0 37 chrX 6748225 6748548 -170225592 - AluSq SINE Alu -2 311 1 323 266 94 66 chrX 6748548 6748751 -170225389 - L1MC4a LINE L1 -1979 4167 3952 2173 104 0 20 chrX 6750955 6751253 -170222887 + AluSx SINE Alu 1 292 -20 309 296 30 15 chrX 6751570 6751702 -170222438 - MLT1K LTR MaLR 0 588 455 272 321 0 0 chrX 6751779 6751863 -170222277 - MLT1K LTR MaLR -346 242 159 240 300 70 46 chrX 6752706 6752861 -170221279 + MIR SINE MIR 20 148 -60 991 197 61 9 chrX 6752883 6753096 -170221044 - MER58A DNA MER1_type 0 224 1 1242 174 97 74 chrX 6753187 6753567 -170220573 + MLT1B LTR MaLR 2 390 0 27 87 0 0 chrX 6753635 6753704 -170220436 + AT_rich Low_complexity Low_complexity 1 69 0 335 258 30 90 chrX 6754116 6754283 -170219857 - L2 LINE L2 -38 3275 3119 2190 161 3 0 chrX 6754526 6754917 -170219223 - L1MC3 LINE L1 -10 7775 7384 527 245 13 14 chrX 6754954 6755103 -170219037 - MIR SINE MIR -67 141 17 197 169 92 62 chrX 6755357 6755422 -170218718 - MER5A DNA MER1_type -1 188 122 246 179 357 0 chrX 6755423 6755507 -170218633 + MER81 DNA DNA 1 114 0 271 216 27 54 chrX 6755529 6755603 -170218537 + MER5A DNA MER1_type 117 188 -1 181 382 136 9 chrX 6755606 6755716 -170218424 + L3b LINE CR1 1399 1522 -61 585 187 32 8 chrX 6755883 6756006 -170218134 + MER5B DNA MER1_type 3 128 -50 1172 177 177 0 chrX 6756035 6756362 -170217778 - MER3 DNA MER1_type 0 2620 2236 350 246 79 0 chrX 6756367 6756481 -170217659 - MER3 DNA MER1_type -41 168 46 270 235 210 0 chrX 6756546 6756627 -170217513 - MER5A DNA MER1_type -83 106 9 301 295 32 0 chrX 6756755 6756850 -170217290 + (TATATG)n Simple_repeat Simple_repeat 2 99 0 2203 108 7 0 chrX 6757584 6757881 -170216259 + AluSx SINE Alu 1 299 -13 280 277 69 0 chrX 6758347 6758448 -170215692 - MIR SINE MIR 0 262 155 1559 202 42 18 chrX 6758449 6758900 -170215240 - LTR37B LTR ERV1 -1 467 6 336 257 140 15 chrX 6758906 6759042 -170215098 - MIR SINE MIR -106 156 4 2055 269 44 12 chrX 6759963 6760605 -170213535 + L1MEc LINE L1 36 697 -5699 2018 260 57 36 chrX 6760616 6761186 -170212954 + L1MEc LINE L1 996 1552 -4844 189 74 0 0 chrX 6761186 6761213 -170212927 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2018 260 57 36 chrX 6761213 6761503 -170212637 + L1MEc LINE L1 1552 1882 -4514 2177 81 7 7 chrX 6761503 6761799 -170212341 + L1PA7 LINE L1 5857 6152 -2 2018 260 57 36 chrX 6761799 6761932 -170212208 + L1MEc LINE L1 1882 2011 -4385 4786 168 8 4 chrX 6761940 6762871 -170211269 - L1PA14 LINE L1 -816 5330 4397 5662 82 7 4 chrX 6762872 6763689 -170210451 + L1PA14 LINE L1 5342 6161 0 1647 221 46 7 chrX 6763696 6764157 -170209983 + L1MEc LINE L1 2013 2491 -3905 327 135 19 0 chrX 6764173 6764225 -170209915 + MLT1E1 LTR MaLR 1 53 -601 300 267 42 33 chrX 6764225 6764345 -170209795 + L1MC4 LINE L1 7639 7759 -283 315 231 150 54 chrX 6764396 6764656 -170209484 + L1MC4 LINE L1 7741 8025 -17 27 0 0 0 chrX 6764826 6764853 -170209287 + AT_rich Low_complexity Low_complexity 1 27 0 2190 114 0 13 chrX 6765006 6765348 -170208792 + AluSq SINE Alu 1 338 0 364 250 9 45 chrX 6765439 6765551 -170208589 - MER5A DNA MER1_type -35 154 47 198 347 31 41 chrX 6765570 6765668 -170208472 + MER5A DNA MER1_type 93 189 0 306 0 0 0 chrX 6765779 6765813 -170208327 + (TG)n Simple_repeat Simple_repeat 2 35 0 255 61 0 0 chrX 6767591 6767624 -170206516 + (T)n Simple_repeat Simple_repeat 1 33 0 992 231 9 18 chrX 6767862 6768087 -170206053 + MER58A DNA MER1_type 2 224 0 36 0 0 0 chrX 6768646 6768682 -170205458 + AT_rich Low_complexity Low_complexity 1 36 0 533 64 13 0 chrX 6768909 6768987 -170205153 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 308 148 16 0 chrX 6769721 6769782 -170204358 + CT-rich Low_complexity Low_complexity 3 64 0 1116 261 74 30 chrX 6771856 6772286 -170201854 - LTR16A LTR ERVL 0 450 2 2868 6 0 0 chrX 6772524 6772835 -170201305 - AluYa5 SINE Alu 0 311 1 457 311 164 15 chrX 6772865 6773267 -170200873 - LTR33 LTR ERVL -25 496 35 615 14 0 0 chrX 6773293 6773365 -170200775 + (GA)n Simple_repeat Simple_repeat 1 72 0 1021 276 31 29 chrX 6775006 6775439 -170198701 - L1MC4 LINE L1 -877 7016 6484 245 301 75 0 chrX 6775589 6775682 -170198458 + MIR SINE MIR 156 255 -7 234 156 0 0 chrX 6776008 6776053 -170198087 + (TG)n Simple_repeat Simple_repeat 2 46 0 332 259 26 9 chrX 6776063 6776179 -170197961 - L1M4 LINE L1 -1298 4848 4731 5298 174 39 57 chrX 6776565 6777280 -170196860 - L1MC3 LINE L1 -8 7777 7093 189 74 0 0 chrX 6777280 6777307 -170196833 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 5298 174 39 57 chrX 6777307 6777847 -170196293 - L1MC3 LINE L1 -692 7093 6545 261 256 58 39 chrX 6777848 6778004 -170196136 + L1MC4a LINE L1 5576 5734 -2074 340 337 63 19 chrX 6778006 6778211 -170195929 + L1MC4a LINE L1 5707 5920 -1888 21 0 0 0 chrX 6779222 6779243 -170194897 + AT_rich Low_complexity Low_complexity 1 21 0 224 308 242 6 chrX 6779519 6779701 -170194439 + MIR SINE MIR 1 225 -37 2867 156 34 6 chrX 6779822 6780295 -170193845 - MER66B LTR ERV1 0 486 1 22 0 0 0 chrX 6781788 6781810 -170192330 + AT_rich Low_complexity Low_complexity 1 22 0 204 289 0 0 chrX 6782070 6782115 -170192025 + polypyrimidine Low_complexity Low_complexity 1 45 0 381 43 0 0 chrX 6782545 6782592 -170191548 + (CA)n Simple_repeat Simple_repeat 2 48 0 314 259 63 28 chrX 6782730 6782873 -170191267 - MLT1K LTR MaLR -9 579 432 209 214 0 0 chrX 6782881 6782923 -170191217 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 2898 174 5 9 chrX 6782971 6783527 -170190613 - L1MB4 LINE L1 -2 6178 5625 527 347 34 5 chrX 6783930 6784308 -170189832 + L1ME3A LINE L1 5496 5884 -286 1814 139 0 23 chrX 6784744 6784921 -170189219 + L1PA16 LINE L1 5867 6036 -130 2054 106 70 25 chrX 6784921 6785280 -170188860 - THE1C LTR MaLR 0 375 1 1814 139 0 23 chrX 6785280 6785404 -170188736 + L1PA16 LINE L1 6036 6161 -5 812 192 99 0 chrX 6786719 6786891 -170187249 + MER5A DNA MER1_type 1 189 0 203 241 133 12 chrX 6787056 6787139 -170187001 - MIR SINE MIR -50 212 120 850 256 60 38 chrX 6787200 6787547 -170186593 + MLT1L LTR MaLR 37 391 -224 297 304 29 0 chrX 6787581 6787683 -170186457 + MLT1L LTR MaLR 496 600 -15 465 98 73 0 chrX 6787826 6787908 -170186232 + L1MC1 LINE L1 6246 6333 0 21 0 0 0 chrX 6787945 6787966 -170186174 + AT_rich Low_complexity Low_complexity 1 21 0 34 72 0 0 chrX 6788399 6788468 -170185672 + AT_rich Low_complexity Low_complexity 1 69 0 320 260 65 0 chrX 6788501 6788578 -170185562 + L2 LINE L2 3228 3309 -4 256 228 0 25 chrX 6788630 6788709 -170185431 - L1M4 LINE L1 -1486 4660 4584 231 274 24 0 chrX 6788762 6788846 -170185294 - L1ME LINE L1 -460 5661 5576 241 255 0 0 chrX 6788893 6788940 -170185200 + (ATG)n Simple_repeat Simple_repeat 2 48 0 536 278 159 0 chrX 6790510 6790661 -170183479 + MER5A DNA MER1_type 9 183 -6 2117 206 113 71 chrX 6791236 6791844 -170182296 - L1ME2 LINE L1 -6 6158 5502 727 150 8 31 chrX 6791844 6791971 -170182169 - FLAM_C SINE Alu -9 124 1 2117 206 113 71 chrX 6791971 6792208 -170181932 - L1ME2 LINE L1 -662 5502 5277 2775 127 29 0 chrX 6792378 6792794 -170181346 + MSTA LTR MaLR 1 428 0 699 304 28 33 chrX 6792814 6793205 -170180935 - L1MCc LINE L1 -6013 410 22 783 251 12 0 chrX 6793410 6793581 -170180559 + MIR SINE MIR 79 251 -11 4398 104 3 20 chrX 6793825 6794471 -170179669 + MER41B LTR ERV1 1 635 0 258 273 149 13 chrX 6794478 6794632 -170179508 + MLT1I LTR MaLR 12 186 -223 494 312 94 8 chrX 6794640 6794874 -170179266 + MLT1I LTR MaLR 152 405 -4 6028 26 1 0 chrX 6796115 6796817 -170177323 - L1PA4 LINE L1 -5 6150 5448 190 259 56 19 chrX 6797004 6797058 -170177082 + L2 LINE L2 3215 3270 -2 187 133 44 0 chrX 6797165 6797210 -170176930 + (TA)n Simple_repeat Simple_repeat 1 47 0 366 337 33 37 chrX 6797957 6798257 -170175883 + L2 LINE L2 2467 2765 -549 257 386 40 0 chrX 6798316 6798417 -170175723 + L2 LINE L2 3103 3207 -65 23 0 0 0 chrX 6798713 6798736 -170175404 + AT_rich Low_complexity Low_complexity 1 23 0 338 261 24 68 chrX 6799349 6799556 -170174584 + L1MC5 LINE L1 7720 7917 -44 2433 233 64 90 chrX 6799606 6800530 -170173610 + MER69 DNA AcHobo 14 913 -1613 7777 147 54 3 chrX 6800532 6801813 -170172327 + L1 LINE L1 16 1361 -6204 1489 186 20 20 chrX 6801824 6802222 -170171918 + L1 LINE L1 4501 4898 -2667 5767 184 41 11 chrX 6802228 6803389 -170170751 + L1MA3 LINE L1 12 1207 -6358 14500 161 27 18 chrX 6803390 6807493 -170166647 + L1MA3 LINE L1 3617 7724 0 363 78 0 0 chrX 6807543 6807594 -170166546 + (CA)n Simple_repeat Simple_repeat 2 52 0 472 244 67 107 chrX 6808528 6808798 -170165342 - MLT1J2 LTR MaLR -124 326 68 521 246 47 15 chrX 6809285 6809535 -170164605 - LTR16A LTR ERVL -7 443 144 333 316 165 0 chrX 6810027 6810160 -170163980 - L2 LINE L2 -1 3271 3117 1241 164 28 0 chrX 6810411 6810624 -170163516 - MER20 DNA MER1_type 0 219 1 269 248 143 56 chrX 6811507 6811668 -170162472 + MER5B DNA MER1_type 2 176 -2 1609 160 190 11 chrX 6812241 6812604 -170161536 + MSTA LTR MaLR 1 428 0 27 29 0 0 chrX 6814191 6814225 -170159915 + AT_rich Low_complexity Low_complexity 1 34 0 672 196 176 0 chrX 6815020 6815173 -170158967 + MIR SINE MIR 23 202 -60 436 275 53 23 chrX 6815242 6815373 -170158767 + MER5A DNA MER1_type 26 160 -29 216 0 0 0 chrX 6815942 6815966 -170158174 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 8816 217 23 4 chrX 6816421 6816794 -170157346 - L1PA16 LINE L1 -6 6160 5796 4932 38 5 0 chrX 6816794 6817378 -170156762 - LTR14C LTR ERVK 0 587 1 8816 217 23 4 chrX 6817378 6819979 -170154161 - L1PA16 LINE L1 -370 5796 3146 1343 243 54 28 chrX 6820011 6820525 -170153615 + MLT1G1 LTR MaLR 1 595 0 202 250 0 0 chrX 6820845 6820885 -170153255 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 385 324 90 33 chrX 6821087 6821420 -170152720 - L1M4 LINE L1 -1214 4932 4581 2432 253 129 83 chrX 6821427 6822495 -170151645 + HAL1 LINE L1 9 1027 -1480 2095 126 7 0 chrX 6822495 6822796 -170151344 + AluSx SINE Alu 3 305 -7 2432 253 129 83 chrX 6822796 6822916 -170151224 + HAL1 LINE L1 1027 1140 -1367 2251 78 7 3 chrX 6822916 6823209 -170150931 + AluY SINE Alu 1 294 -17 2432 253 129 83 chrX 6823209 6823760 -170150380 + HAL1 LINE L1 1140 1829 -678 3032 201 18 8 chrX 6823783 6824396 -170149744 + MLT1E1 LTR MaLR 3 621 -33 769 294 138 12 chrX 6824500 6824987 -170149153 + HAL1 LINE L1 1960 2507 0 293 264 139 21 chrX 6825588 6825732 -170148408 + MIR SINE MIR 61 221 -41 23 54 0 0 chrX 6825803 6825840 -170148300 + AT_rich Low_complexity Low_complexity 1 37 0 28942 78 8 163 chrX 6825874 6832781 -170141359 + L1PA16 LINE L1 12 5730 -436 4842 43 7 0 chrX 6832781 6833364 -170140776 + LTR14C LTR ERVK 1 587 0 28942 78 8 163 chrX 6833364 6833742 -170140398 + L1PA16 LINE L1 5730 6165 -1 8084 86 0 1 chrX 6834351 6836270 -170137870 + L1PA3 LINE L1 4231 6152 -3 204 83 56 0 chrX 6836273 6836309 -170137831 + A-rich Low_complexity Low_complexity 2 39 0 1293 258 131 52 chrX 6836354 6837287 -170136853 + HAL1 LINE L1 359 1364 -1143 1530 157 14 7 chrX 6837518 6837804 -170136336 + L1MB3 LINE L1 5894 6181 -2 365 276 6 39 chrX 6838631 6838787 -170135353 + L1ME1 LINE L1 5882 6032 -134 348 174 29 0 chrX 6838800 6838869 -170135271 - L1PB3 LINE L1 -10 6144 6074 430 258 102 88 chrX 6839017 6839437 -170134703 - L1ME4a LINE L1 -81 6040 5610 2286 108 0 0 chrX 6839437 6839733 -170134407 - AluSc SINE Alu -13 296 1 430 258 102 88 chrX 6839733 6839813 -170134327 - L1ME4a LINE L1 -511 5610 5533 4937 155 77 35 chrX 6840532 6841560 -170132580 + MER11C LTR ERVK 1 1071 0 526 319 26 35 chrX 6842751 6842983 -170131157 + MIR SINE MIR 12 241 -21 255 296 10 20 chrX 6843031 6843129 -170131011 + (TAG)n Simple_repeat Simple_repeat 2 98 0 366 23 0 0 chrX 6843191 6843234 -170130906 + (GA)n Simple_repeat Simple_repeat 1 43 0 260 256 26 0 chrX 6843939 6844017 -170130123 - MIR3 SINE MIR -5 203 124 1519 115 93 0 chrX 6844425 6844679 -170129461 + AluSx SINE Alu 38 312 0 420 257 104 64 chrX 6845093 6845342 -170128798 - MIR SINE MIR 0 262 4 25 99 0 0 chrX 6845414 6845495 -170128645 + AT_rich Low_complexity Low_complexity 1 81 0 201 259 17 35 chrX 6847121 6847179 -170126961 - L2 LINE L2 0 3272 3216 311 346 46 59 chrX 6848013 6848337 -170125803 - L2 LINE L2 -449 2865 2546 791 237 24 19 chrX 6848414 6848621 -170125519 + AluSq SINE Alu 6 213 -100 817 203 27 40 chrX 6848726 6848948 -170125192 - L1ME4a LINE L1 -624 5542 5324 1831 172 0 6 chrX 6849109 6849423 -170124717 - AluJo SINE Alu 0 312 1 716 289 84 52 chrX 6849594 6849846 -170124294 - L1ME4a LINE L1 -2575 3571 3328 2336 112 0 0 chrX 6849846 6850158 -170123982 - AluSx SINE Alu 0 312 1 716 289 84 52 chrX 6850158 6850515 -170123625 - L1ME4a LINE L1 -2818 3328 2943 1001 225 38 49 chrX 6850738 6851084 -170123056 + L1ME1 LINE L1 5813 6154 -12 232 281 36 14 chrX 6851162 6851301 -170122839 + L1P LINE L1 2349 2490 -3656 344 304 87 29 chrX 6851379 6851586 -170122554 + L1M4 LINE L1 2584 2802 -3344 22 0 0 0 chrX 6851611 6851633 -170122507 + AT_rich Low_complexity Low_complexity 1 22 0 245 295 72 14 chrX 6851689 6851828 -170122312 + HAL1 LINE L1 28 174 -2333 6153 45 5 2 chrX 6851938 6852785 -170121355 + L1P LINE L1 2903 3751 -2395 783 251 12 0 chrX 6853594 6853765 -170120375 + MIR SINE MIR 79 251 -11 3325 106 2 23 chrX 6854009 6854529 -170119611 + MER41B LTR ERV1 1 509 -126 215 322 11 11 chrX 6854774 6854864 -170119276 + CT-rich Low_complexity Low_complexity 1 90 0 358 241 60 0 chrX 6854928 6855011 -170119129 + MIR SINE MIR 136 223 -39 187 200 40 40 chrX 6855111 6855161 -170118979 + L3b LINE CR1 1277 1326 -257 21 0 0 0 chrX 6855442 6855463 -170118677 + AT_rich Low_complexity Low_complexity 1 21 0 248 315 102 35 chrX 6855620 6855817 -170118323 + MIR SINE MIR 13 222 -40 21 36 0 0 chrX 6856216 6856244 -170117896 + AT_rich Low_complexity Low_complexity 1 28 0 1259 150 47 29 chrX 6856734 6857046 -170117094 + L1MA4 LINE L1 6004 6294 -9 1008 142 18 18 chrX 6857609 6857827 -170116313 + L1P LINE L1 4851 5068 -1078 240 186 12 23 chrX 6858074 6858160 -170115980 + GA-rich Low_complexity Low_complexity 1 85 0 4083 153 23 3 chrX 6859304 6860075 -170114065 - L1 LINE L1 -1617 4923 4137 641 261 48 0 chrX 6860127 6860334 -170113806 + MER46C DNA MER2_type 113 329 -9 2091 119 0 33 chrX 6861003 6861306 -170112834 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 6862921 6862965 -170111175 + AT_rich Low_complexity Low_complexity 1 44 0 409 262 96 44 chrX 6864129 6864484 -170109656 - L1MDa LINE L1 -3751 2789 2418 21 57 0 0 chrX 6864727 6864762 -170109378 + AT_rich Low_complexity Low_complexity 1 35 0 552 282 62 57 chrX 6864870 6865256 -170108884 - L1MDa LINE L1 -864 2037 1595 1728 164 94 110 chrX 6865263 6865764 -170108376 - L1MDa LINE L1 -6031 509 17 717 92 0 0 chrX 6866416 6866514 -170107626 - AluSc SINE Alu -211 98 1 1622 275 83 21 chrX 6866862 6867637 -170106503 - HAL1 LINE L1 -396 2111 1289 521 277 152 13 chrX 6867798 6868022 -170106118 + MLT1J2 LTR MaLR 196 450 0 280 235 45 115 chrX 6868022 6868379 -170105761 - HAL1 LINE L1 -1218 1289 958 254 305 126 29 chrX 6868652 6868826 -170105314 - HAL1 LINE L1 -1907 600 410 423 273 17 17 chrX 6869075 6869247 -170104893 - LTR16C LTR ERVL -57 434 263 237 306 116 75 chrX 6870266 6870707 -170103433 + L2 LINE L2 2814 3272 0 856 107 112 56 chrX 6870869 6871047 -170103093 + MER5A DNA MER1_type 2 189 0 896 201 40 0 chrX 6871974 6872173 -170101967 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 6873557 6873585 -170100555 + (TCC)n Simple_repeat Simple_repeat 3 31 0 586 298 30 0 chrX 6873954 6874085 -170100055 - MER91C DNA MER1_type 0 140 6 345 296 102 9 chrX 6874122 6874230 -170099910 - L2 LINE L2 0 3313 3196 187 324 152 19 chrX 6874723 6874828 -170099312 + L2 LINE L2 3145 3263 -9 1685 132 88 15 chrX 6876927 6877268 -170096872 - THE1C LTR MaLR -9 366 1 895 290 57 44 chrX 6877858 6878316 -170095824 - LTR16B LTR ERVL 0 464 1 3139 195 70 17 chrX 6878479 6879260 -170094880 - MER99 DNA DNA 0 828 6 750 208 3 15 chrX 6879646 6879954 -170094186 - MLT1A2 LTR MaLR 0 374 1 3234 139 17 7 chrX 6880323 6880897 -170093243 - L1MB7 LINE L1 -23 6161 5582 525 247 110 26 chrX 6880967 6881121 -170093019 - MER5B DNA MER1_type -8 170 4 580 306 52 6 chrX 6881414 6881587 -170092553 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 6882375 6882458 -170091682 - L2 LINE L2 -84 3229 3151 482 225 220 17 chrX 6882703 6882876 -170091264 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 6882940 6882981 -170091159 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 199 264 194 0 chrX 6882982 6883054 -170091086 - L2 LINE L2 -14 3299 3214 184 297 47 16 chrX 6883113 6883177 -170090963 - L2 LINE L2 -66 3206 3141 1877 153 7 0 chrX 6883486 6883761 -170090379 + AluJo SINE Alu 20 296 -16 285 318 77 12 chrX 6884826 6884996 -170089144 + L2 LINE L2 1668 1848 -1466 789 283 116 44 chrX 6885639 6885937 -170088203 + L2 LINE L2 1671 2007 -1307 1944 152 7 13 chrX 6885937 6886276 -170087864 + AluSx SINE Alu 1 312 0 789 283 116 44 chrX 6886276 6886383 -170087757 + L2 LINE L2 2007 2105 -1209 1411 169 4 4 chrX 6886400 6886661 -170087479 - L1MB5 LINE L1 0 6174 5914 330 273 13 0 chrX 6886701 6886778 -170087362 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 6886804 6886832 -170087308 + (CA)n Simple_repeat Simple_repeat 2 29 0 808 151 78 0 chrX 6886912 6887091 -170087049 - L1MB5 LINE L1 -277 5907 5715 1447 227 127 55 chrX 6887092 6887604 -170086536 + L2 LINE L2 2103 2651 -663 1148 187 9 5 chrX 6888259 6888473 -170085667 + MER20 DNA MER1_type 1 215 -4 416 255 39 39 chrX 6889152 6889305 -170084835 - MIR3 SINE MIR -15 193 41 198 0 0 0 chrX 6890670 6890692 -170083448 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 6891211 6891246 -170082894 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 6891666 6891746 -170082394 + L2 LINE L2 3231 3307 -6 193 373 124 17 chrX 6891844 6892021 -170082119 - L3b LINE CR1 -12 1571 1376 180 111 0 0 chrX 6892213 6892240 -170081900 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 303 53 26 chrX 6892428 6892504 -170081636 + L2 LINE L2 2559 2636 -678 7468 32 4 0 chrX 6892749 6894258 -170079882 - L1PA5 LINE L1 -4 6150 4639 26 113 0 0 chrX 6894337 6894461 -170079679 + AT_rich Low_complexity Low_complexity 1 124 0 670 285 84 45 chrX 6895997 6896176 -170077964 + L2 LINE L2 2620 2791 -522 3569 121 21 8 chrX 6896176 6896696 -170077444 - MER1A DNA MER1_type 0 527 1 670 285 84 45 chrX 6896696 6897094 -170077046 + L2 LINE L2 2791 3216 -97 1080 199 14 5 chrX 6897260 6897476 -170076664 - MER58A DNA MER1_type 0 224 7 232 295 0 0 chrX 6898257 6898318 -170075822 - MIR SINE MIR -110 152 92 519 260 78 26 chrX 6898468 6898622 -170075518 + MER5B DNA MER1_type 17 178 0 1320 180 9 0 chrX 6898630 6898852 -170075288 - MER58A DNA MER1_type 0 224 1 353 343 108 5 chrX 6899058 6899271 -170074869 + MIR SINE MIR 12 246 -16 685 281 112 42 chrX 6899895 6900421 -170073719 + MLT1L LTR MaLR 5 567 -48 384 40 0 0 chrX 6902397 6902447 -170071693 + (CA)n Simple_repeat Simple_repeat 2 51 0 228 261 22 54 chrX 6902707 6902799 -170071341 - MIR SINE MIR -111 151 63 849 219 0 12 chrX 6903837 6904001 -170070139 - MER5A DNA MER1_type -22 167 6 452 18 18 0 chrX 6904880 6904937 -170069203 + (CA)n Simple_repeat Simple_repeat 2 59 0 2050 132 7 0 chrX 6904986 6905274 -170068866 + AluSx SINE Alu 1 290 -22 765 284 36 4 chrX 6906024 6906249 -170067891 - MIR SINE MIR -16 246 15 753 29 59 0 chrX 6906907 6907009 -170067131 + L1PA13 LINE L1 6052 6159 -4 647 310 67 65 chrX 6907050 6907421 -170066719 - L2 LINE L2 -5 3267 2896 260 285 200 15 chrX 6907420 6907550 -170066590 - MIR3 SINE MIR -38 170 17 * 276 276 60 141 chrX 6907592 6907671 -170066469 - MER91B DNA MER1_type 0 190 106 2267 106 0 13 chrX 6907671 6907983 -170066157 + AluSc SINE Alu 1 308 -1 276 276 60 141 chrX 6907983 6908102 -170066038 - MER91B DNA MER1_type -84 106 8 204 135 27 0 chrX 6908477 6908514 -170065626 + (TTG)n Simple_repeat Simple_repeat 2 39 0 290 252 108 7 chrX 6908699 6908838 -170065302 + MER103 DNA DNA 8 160 -6 243 0 0 0 chrX 6909338 6909365 -170064775 + (CA)n Simple_repeat Simple_repeat 2 28 0 436 267 86 28 chrX 6909438 6909703 -170064437 - L1ME LINE L1 -361 5809 5521 2286 123 17 57 chrX 6909778 6910183 -170063957 - MLT1B LTR MaLR -1 389 1 186 270 0 0 chrX 6910311 6910385 -170063755 + (TA)n Simple_repeat Simple_repeat 1 74 0 200 200 0 0 chrX 6910408 6910443 -170063697 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 2236 141 88 13 chrX 6911593 6911991 -170062149 + MSTA LTR MaLR 1 428 0 330 349 40 7 chrX 6912776 6912925 -170061215 - MIR SINE MIR -14 248 95 1098 193 9 14 chrX 6913130 6913348 -170060792 - MER20 DNA MER1_type 0 219 3 40 49 0 0 chrX 6914861 6914922 -170059218 + AT_rich Low_complexity Low_complexity 1 61 0 1282 146 47 29 chrX 6915069 6915381 -170058759 + L1MA4 LINE L1 6004 6294 -9 7757 20 0 0 chrX 6915943 6917248 -170056892 + L1PA3 LINE L1 4851 6155 0 186 356 96 0 chrX 6917672 6917776 -170056364 - MIR SINE MIR -138 124 11 1171 261 35 61 chrX 6918085 6918626 -170055514 + L1ME3 LINE L1 5628 6154 -8 902 53 0 0 chrX 6918833 6918946 -170055194 + L1PA10 LINE L1 6056 6168 0 3921 16 0 0 chrX 6918957 6919405 -170054735 + L1PA2 LINE L1 5706 6153 -2 1154 161 22 40 chrX 6920107 6920330 -170053810 + MER20 DNA MER1_type 1 219 0 355 328 41 62 chrX 6920663 6920858 -170053282 + MIR3 SINE MIR 14 204 -4 21 0 0 0 chrX 6922793 6922814 -170051326 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chrX 6923281 6923311 -170050829 + (TCTCCC)n Simple_repeat Simple_repeat 3 32 0 1127 174 33 5 chrX 6923412 6923625 -170050515 - MER20 DNA MER1_type 0 219 1 12760 27 2 2 chrX 6923743 6926123 -170048017 + L1PA3 LINE L1 3789 6170 0 1357 48 0 0 chrX 6926517 6926684 -170047456 - L1PA4 LINE L1 -2 6153 5987 801 10 0 0 chrX 6926684 6926780 -170047360 + L1PA4 LINE L1 5897 5992 -163 181 269 154 0 chrX 6926788 6926866 -170047274 - L2 LINE L2 -1612 1702 1613 1725 208 46 0 chrX 6927134 6927523 -170046617 - MLT1E2 LTR MaLR -1 625 219 2348 144 8 0 chrX 6927529 6927891 -170046249 + MLT1A1 LTR MaLR 1 365 0 1183 198 28 0 chrX 6927965 6928213 -170045927 + L1MB7 LINE L1 5914 6168 -16 231 319 121 33 chrX 6928930 6929021 -170045119 - L2 LINE L2 0 3272 3174 189 147 0 0 chrX 6929620 6929654 -170044486 + (TA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chrX 6930066 6930095 -170044045 + (CAAAA)n Simple_repeat Simple_repeat 1 29 0 181 179 0 51 chrX 6930186 6930225 -170043915 + L3 LINE CR1 1291 1327 -250 967 58 14 0 chrX 6930569 6930703 -170043437 - L1MA4 LINE L1 -40 6260 6124 402 135 0 0 chrX 6930703 6930774 -170043366 + L1MA4 LINE L1 6227 6300 0 1976 171 131 11 chrX 6931186 6931637 -170042503 - MLT1D LTR MaLR 0 505 1 1816 181 7 7 chrX 6932066 6932365 -170041775 + AluJb SINE Alu 1 299 -13 308 272 70 63 chrX 6932860 6933091 -170041049 - MIR3 SINE MIR -29 233 4 22431 165 17 13 chrX 6933580 6940104 -170034036 - L1PA11 LINE L1 -2 7610 1 233 57 29 0 chrX 6941250 6941285 -170032855 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 222 365 48 7 chrX 6941533 6941678 -170032462 + MIR SINE MIR 46 196 -66 672 292 27 0 chrX 6941992 6942177 -170031963 - MIR SINE MIR -58 204 15 1036 182 5 0 chrX 6943641 6943844 -170030296 - MER3 DNA MER1_type 0 209 6 281 284 136 11 chrX 6943870 6943958 -170030182 + L2 LINE L2 3174 3272 0 685 281 112 42 chrX 6944391 6944917 -170029223 - MLT1L LTR MaLR -48 567 5 353 343 108 5 chrX 6945541 6945754 -170028386 - MIR SINE MIR -16 246 12 1320 180 9 0 chrX 6945960 6946182 -170027958 + MER58A DNA MER1_type 1 224 0 519 260 78 26 chrX 6946190 6946344 -170027796 - MER5B DNA MER1_type 0 178 17 232 295 0 0 chrX 6946494 6946555 -170027585 + MIR SINE MIR 92 152 -110 1080 199 14 5 chrX 6947336 6947552 -170026588 + MER58A DNA MER1_type 7 224 0 670 285 84 45 chrX 6947718 6948116 -170026024 - L2 LINE L2 -97 3216 2791 3569 121 21 8 chrX 6948116 6948636 -170025504 + MER1A DNA MER1_type 1 527 0 670 285 84 45 chrX 6948636 6948815 -170025325 - L2 LINE L2 -522 2791 2620 26 113 0 0 chrX 6950351 6950475 -170023665 + AT_rich Low_complexity Low_complexity 1 124 0 7468 32 3 1 chrX 6950554 6952063 -170022077 + L1PA5 LINE L1 4639 6150 -4 195 303 53 26 chrX 6952308 6952384 -170021756 - L2 LINE L2 -678 2636 2559 180 111 0 0 chrX 6952572 6952599 -170021541 + (TG)n Simple_repeat Simple_repeat 2 28 0 193 373 124 17 chrX 6952791 6952968 -170021172 + L3b LINE CR1 1376 1571 -12 288 200 12 50 chrX 6953066 6953146 -170020994 - L2 LINE L2 -6 3307 3231 21 57 0 0 chrX 6953566 6953601 -170020539 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chrX 6954120 6954142 -170019998 + (T)n Simple_repeat Simple_repeat 1 22 0 416 255 39 39 chrX 6955507 6955660 -170018480 + MIR3 SINE MIR 41 193 -15 1148 187 9 5 chrX 6956339 6956553 -170017587 - MER20 DNA MER1_type -4 215 1 1447 227 127 55 chrX 6957208 6957720 -170016420 - L2 LINE L2 -663 2651 2103 808 151 78 0 chrX 6957721 6957900 -170016240 + L1MB5 LINE L1 5715 5907 -277 252 0 0 0 chrX 6957980 6958008 -170016132 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 273 13 0 chrX 6958034 6958111 -170016029 - L2 LINE L2 -663 2651 2574 1411 169 4 4 chrX 6958151 6958412 -170015728 + L1MB5 LINE L1 5914 6174 0 789 283 116 44 chrX 6958429 6958536 -170015604 - L2 LINE L2 -1209 2105 2007 1944 152 7 13 chrX 6958536 6958875 -170015265 - AluSx SINE Alu 0 312 1 789 283 116 44 chrX 6958875 6959173 -170014967 - L2 LINE L2 -1307 2007 1671 285 318 77 12 chrX 6959816 6959986 -170014154 - L2 LINE L2 -1466 1848 1668 1877 153 7 0 chrX 6961051 6961326 -170012814 - AluJo SINE Alu -16 296 20 184 297 47 16 chrX 6961635 6961699 -170012441 + L2 LINE L2 3141 3206 -66 199 264 194 0 chrX 6961758 6961830 -170012310 + L2 LINE L2 3214 3299 -14 257 73 0 24 chrX 6961831 6961872 -170012268 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 482 225 220 17 chrX 6961936 6962109 -170012031 + MIR SINE MIR 30 237 -25 211 241 24 72 chrX 6962354 6962437 -170011703 + L2 LINE L2 3151 3229 -84 580 306 52 6 chrX 6963225 6963398 -170010742 + MIR SINE MIR 2 182 -80 525 247 110 26 chrX 6963691 6963845 -170010295 + MER5B DNA MER1_type 4 170 -8 3234 139 17 7 chrX 6963915 6964489 -170009651 + L1MB7 LINE L1 5582 6161 -23 750 208 3 15 chrX 6964858 6965166 -170008974 + MLT1A2 LTR MaLR 1 374 0 3139 195 70 17 chrX 6965552 6966333 -170007807 + MER99 DNA DNA 6 828 0 895 290 57 44 chrX 6966496 6966954 -170007186 + LTR16B LTR ERVL 1 464 0 1685 132 88 15 chrX 6967544 6967885 -170006255 + THE1C LTR MaLR 1 366 -9 187 324 152 19 chrX 6969984 6970089 -170004051 - L2 LINE L2 -9 3263 3145 345 296 102 9 chrX 6970582 6970690 -170003450 + L2 LINE L2 3196 3313 0 586 298 30 0 chrX 6970727 6970858 -170003282 + MER91C DNA MER1_type 6 140 0 191 36 36 0 chrX 6971227 6971255 -170002885 + (GGA)n Simple_repeat Simple_repeat 3 31 0 896 201 40 0 chrX 6972639 6972838 -170001302 + MER3 DNA MER1_type 2 208 -1 856 107 112 56 chrX 6973765 6973943 -170000197 - MER5A DNA MER1_type 0 189 2 237 306 116 75 chrX 6974105 6974546 -169999594 - L2 LINE L2 0 3272 2814 423 273 17 17 chrX 6975565 6975737 -169998403 + LTR16C LTR ERVL 263 434 -57 254 305 126 29 chrX 6975986 6976160 -169997980 + HAL1 LINE L1 410 600 -1907 320 243 123 88 chrX 6976268 6976790 -169997350 + HAL1 LINE L1 750 1289 -1218 521 277 152 13 chrX 6976790 6977014 -169997126 - MLT1J2 LTR MaLR 0 450 196 1249 253 88 5 chrX 6977175 6977598 -169996542 + HAL1 LINE L1 1289 1746 -761 717 128 0 56 chrX 6977740 6977865 -169996275 - FLAM_C SINE Alu -23 120 3 249 289 44 0 chrX 6977869 6977959 -169996181 + L3 LINE CR1 796 889 -688 299 306 15 22 chrX 6978421 6978555 -169995585 + L1M4 LINE L1 4883 5015 -1131 1575 125 73 62 chrX 6978754 6979043 -169995097 + AluJo SINE Alu 1 292 -20 625 280 102 41 chrX 6979938 6980332 -169993808 + L2 LINE L2 2791 3216 -97 1331 150 59 16 chrX 6981054 6981308 -169992832 + AluSc SINE Alu 9 273 -36 547 54 14 0 chrX 6981425 6981499 -169992641 + L1PA7 LINE L1 6077 6151 -3 426 248 66 15 chrX 6981781 6981918 -169992222 - MER117 DNA MER1_type -50 147 4 661 133 0 0 chrX 6983177 6983275 -169990865 - AluY SINE Alu -206 105 8 1404 208 32 26 chrX 6983326 6983705 -169990435 - L1MA7 LINE L1 -66 6225 5845 900 191 0 37 chrX 6983714 6983929 -169990211 - AluSc SINE Alu 0 309 103 336 258 89 61 chrX 6984511 6984675 -169989465 + MIR SINE MIR 19 184 -56 21 36 0 0 chrX 6984995 6985023 -169989117 + AT_rich Low_complexity Low_complexity 1 28 0 588 193 18 0 chrX 6986243 6986352 -169987788 - MER8 DNA MER2_type -125 114 4 858 230 16 11 chrX 6986363 6986554 -169987586 + MER58A DNA MER1_type 24 215 -9 238 214 43 29 chrX 6986583 6986653 -169987487 - MLT1J1 LTR MaLR -305 141 71 * 261 267 33 22 chrX 6986606 6986696 -169987444 - LTR67 LTR ERVL -396 161 71 330 251 47 76 chrX 6986745 6986916 -169987224 + MIR SINE MIR 85 250 -12 252 0 0 0 chrX 6987464 6987492 -169986648 + (A)n Simple_repeat Simple_repeat 1 28 0 237 339 0 62 chrX 6988630 6988742 -169985398 + L2 LINE L2 3000 3104 -209 189 196 0 0 chrX 6988913 6988959 -169985181 + (CA)n Simple_repeat Simple_repeat 2 47 0 832 174 47 56 chrX 6989647 6989860 -169984280 - MER20 DNA MER1_type -3 216 6 214 356 33 11 chrX 6990675 6990765 -169983375 - L2 LINE L2 -211 3061 2970 228 172 0 241 chrX 6990816 6990932 -169983208 + Tigger1 DNA MER2_type 2 89 -2329 1100 199 23 0 chrX 6990934 6991150 -169982990 + Tigger1 DNA MER2_type 67 287 -2131 269 218 11 81 chrX 6991301 6991388 -169982752 + L2 LINE L2 3231 3311 -2 236 380 70 16 chrX 6991920 6992049 -169982091 - L2 LINE L2 -1 3271 3136 290 82 9 0 chrX 6992062 6992108 -169982032 + Alu SINE Alu 252 291 -11 247 314 17 42 chrX 6992111 6992122 -169982018 - L2 LINE L2 -185 3128 3118 281 100 20 0 chrX 6992122 6992172 -169981968 + (TA)n Simple_repeat Simple_repeat 1 51 0 247 314 17 42 chrX 6992172 6992278 -169981862 - L2 LINE L2 -195 3118 3014 579 192 35 18 chrX 6992295 6992582 -169981558 + (TA)n Simple_repeat Simple_repeat 1 292 0 1387 238 11 18 chrX 6992759 6993209 -169980931 - L1M4 LINE L1 -1434 4712 4266 603 269 28 0 chrX 6993232 6993414 -169980726 - L1ME LINE L1 -392 5770 5584 1861 154 10 3 chrX 6994303 6994596 -169979544 + AluJb SINE Alu 2 296 -16 182 279 147 0 chrX 6994973 6995041 -169979099 - L2 LINE L2 -8 3264 3187 196 317 24 41 chrX 6995269 6995392 -169978748 - MIR SINE MIR -67 195 75 641 60 24 0 chrX 6995514 6995638 -169978502 + AluSc SINE Alu 194 319 0 212 322 130 55 chrX 6996414 6996560 -169977580 - MIR SINE MIR -6 256 100 717 143 23 143 chrX 6997196 6997503 -169976637 + Charlie1 DNA MER1_type 2492 2761 0 415 295 110 20 chrX 6997586 6997786 -169976354 + MIR SINE MIR 20 237 -25 411 236 55 0 chrX 6997886 6997996 -169976144 + MER63 DNA MER1_type 1 742 -94 21 0 0 0 chrX 6998660 6998681 -169975459 + AT_rich Low_complexity Low_complexity 1 21 0 900 346 152 35 chrX 6998810 6999599 -169974541 + L3 LINE CR1 593 1473 -104 579 215 15 0 chrX 6999882 7000017 -169974123 - L1MC4 LINE L1 -1078 6964 6828 1160 257 39 52 chrX 7000108 7000729 -169973411 - L1M4 LINE L1 -4577 2248 1485 461 369 31 5 chrX 7001451 7001646 -169972494 - MIR SINE MIR -36 226 27 719 239 93 11 chrX 7001646 7002008 -169972132 - LTR16A1 LTR ERVL -1 456 4 722 207 41 0 chrX 7002144 7002289 -169971851 - MER5A DNA MER1_type -38 151 1 1596 173 59 17 chrX 7002757 7003046 -169971094 + AluJo SINE Alu 1 301 -11 2005 158 16 67 chrX 7003222 7003714 -169970426 - L1MB8 LINE L1 0 6178 5712 1364 186 30 4 chrX 7004757 7005020 -169969120 + AluJb SINE Alu 40 309 -3 969 203 42 0 chrX 7005278 7005515 -169968625 + MER33 DNA MER1_type 1 247 -77 1483 229 50 14 chrX 7006449 7007194 -169966946 - MER99 DNA DNA 0 828 2 882 232 132 12 chrX 7007564 7007883 -169966257 + MLT1C LTR MaLR 111 467 0 25 51 0 0 chrX 7008173 7008212 -169965928 + AT_rich Low_complexity Low_complexity 1 39 0 484 298 68 8 chrX 7008780 7009015 -169965125 - HAL1 LINE L1 -1754 753 505 6931 126 15 5 chrX 7009016 7010147 -169963993 - Tigger1 DNA MER2_type 0 2418 1277 720 256 19 0 chrX 7012224 7012384 -169961756 - FRAM SINE Alu -13 163 1 316 324 64 20 chrX 7012448 7012652 -169961488 - L1 LINE L1 -2368 3778 3566 226 363 0 0 chrX 7013181 7013261 -169960879 + CT-rich Low_complexity Low_complexity 2 81 0 321 170 160 57 chrX 7013419 7013525 -169960615 - L2 LINE L2 0 3313 3197 21 36 0 0 chrX 7013560 7013588 -169960552 + AT_rich Low_complexity Low_complexity 1 28 0 199 204 0 23 chrX 7014234 7014278 -169959862 + MER5A DNA MER1_type 6 48 -141 349 223 68 19 chrX 7015680 7015783 -169958357 - L3 LINE CR1 -910 667 560 33 25 0 0 chrX 7016434 7016474 -169957666 + AT_rich Low_complexity Low_complexity 1 40 0 2399 77 17 31 chrX 7016474 7016826 -169957314 - L1PA7 LINE L1 -7 6147 5801 1113 250 114 45 chrX 7017252 7017725 -169956415 - MLT1H1 LTR MaLR -9 546 47 868 249 38 9 chrX 7018891 7019104 -169955036 + MER20 DNA MER1_type 1 219 0 573 201 29 14 chrX 7019466 7019605 -169954535 - AluSg/x SINE Alu -7 305 165 24 0 0 0 chrX 7019617 7019641 -169954499 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chrX 7019882 7019907 -169954233 + AT_rich Low_complexity Low_complexity 1 25 0 1787 169 0 20 chrX 7020284 7020586 -169953554 + AluJb SINE Alu 1 296 -16 74 39 0 0 chrX 7020812 7020914 -169953226 + AT_rich Low_complexity Low_complexity 1 102 0 1044 236 11 22 chrX 7021190 7021461 -169952679 + MLT1C LTR MaLR 200 467 0 305 293 0 13 chrX 7022068 7022143 -169951997 + MIR3 SINE MIR 111 184 -24 2047 99 0 3 chrX 7022437 7022749 -169951391 - L1P LINE L1 -3501 2645 2335 759 118 21 102 chrX 7022867 7023053 -169951087 + MER96B DNA MER1_type? 11 181 -236 233 167 19 0 chrX 7026782 7026836 -169947304 + CT-rich Low_complexity Low_complexity 2 56 0 575 299 0 0 chrX 7026896 7027030 -169947110 - L2 LINE L2 0 3313 3180 300 325 58 34 chrX 7027269 7027475 -169946665 - L2 LINE L2 -656 2658 2448 244 267 0 0 chrX 7027479 7027539 -169946601 - L2 LINE L2 -14 3299 3240 662 264 119 57 chrX 7027552 7028006 -169946134 - MLT1J LTR MaLR -11 500 19 182 365 21 10 chrX 7028082 7028178 -169945962 + MIR3 SINE MIR 105 201 -7 948 218 17 13 chrX 7028789 7029023 -169945117 + MER96B DNA MER1_type? 1 235 -182 2028 135 0 0 chrX 7029619 7029907 -169944233 + AluSx SINE Alu 1 288 -24 255 297 65 47 chrX 7030007 7030283 -169943857 + HAL1 LINE L1 1483 1763 -744 17338 64 4 15 chrX 7030486 7032963 -169941177 - L1P LINE L1 -1616 4530 2080 23 33 0 0 chrX 7033193 7033223 -169940917 + GC_rich Low_complexity Low_complexity 1 30 0 2076 197 41 60 chrX 7034905 7035894 -169938246 + L1M2 LINE L1 4663 5632 -680 326 226 119 0 chrX 7035896 7035980 -169938160 + L2 LINE L2 2749 2842 -472 472 223 78 10 chrX 7035982 7036085 -169938055 - L2 LINE L2 0 3313 3204 1259 242 89 28 chrX 7036092 7036517 -169937623 + L2 LINE L2 2859 3309 -4 10498 131 25 19 chrX 7036563 7038421 -169935719 + L1P LINE L1 55 1923 -4223 234 109 65 0 chrX 7139757 7139803 -169834337 + T-rich Low_complexity Low_complexity 2 50 0 21 110 0 0 chrX 7141154 7141245 -169832895 + AT_rich Low_complexity Low_complexity 1 91 0 2150 87 18 0 chrX 7141453 7141759 -169832381 + AluY SINE Alu 1 311 0 1885 157 38 0 chrX 7142141 7142434 -169831706 - AluJb SINE Alu -8 304 1 327 158 40 119 chrX 7142735 7142836 -169831304 - MER20 DNA MER1_type -57 162 70 923 28 14 35 chrX 7143062 7143203 -169830937 + (TTTC)n Simple_repeat Simple_repeat 2 139 0 7440 41 0 2 chrX 7144681 7145908 -169828232 + L1PA5 LINE L1 4930 6154 0 707 224 0 0 chrX 7145936 7146083 -169828057 + MER58B DNA MER1_type 195 341 0 1704 124 0 4 chrX 7146337 7146570 -169827570 + AluJb SINE Alu 1 232 -80 255 287 167 33 chrX 7146915 7147065 -169827075 - MIR SINE MIR 0 262 93 668 280 97 41 chrX 7147247 7147657 -169826483 - MLT1H LTR MaLR 0 549 15 258 32 0 0 chrX 7147798 7147829 -169826311 + (TG)n Simple_repeat Simple_repeat 2 32 0 190 0 0 62 chrX 7148211 7148243 -169825897 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1686 148 44 19 chrX 7148245 7148516 -169825624 - AluJo SINE Alu -30 282 5 2455 52 13 7 chrX 7150284 7150593 -169823547 + AluY SINE Alu 1 311 0 1698 157 7 38 chrX 7150797 7151090 -169823050 + AluJb SINE Alu 1 311 0 244 0 0 0 chrX 7151090 7151117 -169823023 + (TAAA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chrX 7151203 7151224 -169822916 + AT_rich Low_complexity Low_complexity 1 21 0 843 176 59 12 chrX 7151841 7152011 -169822129 + MER5A DNA MER1_type 10 187 -2 242 275 14 0 chrX 7152519 7152588 -169821552 + MIR3 SINE MIR 133 202 -6 189 94 0 0 chrX 7154740 7154772 -169819368 + (A)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chrX 7155186 7155207 -169818933 + AT_rich Low_complexity Low_complexity 1 21 0 609 301 26 0 chrX 7156557 7156750 -169817390 - MIR SINE MIR -62 200 3 2480 146 36 5 chrX 7156886 7157297 -169816843 - MSTB LTR MaLR -2 424 1 1660 158 37 11 chrX 7157441 7157714 -169816426 - AluJb SINE Alu -32 280 1 2257 128 0 0 chrX 7157777 7158089 -169816051 - AluSx SINE Alu 0 312 1 232 47 23 23 chrX 7158396 7158439 -169815701 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2079 111 4 0 chrX 7158441 7158720 -169815420 - AluSx SINE Alu -30 282 3 307 299 83 25 chrX 7158907 7159064 -169815076 + MER5A DNA MER1_type 24 189 0 2566 141 14 39 chrX 7159114 7159553 -169814587 + MSTA LTR MaLR 1 428 0 432 229 62 0 chrX 7159677 7159773 -169814367 - MER5A DNA MER1_type -84 105 4 192 77 0 0 chrX 7161087 7161113 -169813027 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 180 364 46 5 chrX 7161797 7161992 -169812148 + L2 LINE L2 2569 2771 -543 206 228 0 0 chrX 7162220 7162277 -169811863 + (TAA)n Simple_repeat Simple_repeat 3 59 0 227 350 134 29 chrX 7162865 7163142 -169810998 + L2 LINE L2 2877 3182 -90 231 158 85 61 chrX 7163814 7163896 -169810244 - MIR SINE MIR 0 262 179 322 311 108 20 chrX 7164372 7164520 -169809620 - MIR SINE MIR -100 162 2 565 264 19 7 chrX 7168350 7168505 -169805635 - MIR SINE MIR -49 213 57 254 231 64 0 chrX 7168710 7168788 -169805352 + MIR SINE MIR 103 185 -77 249 108 0 0 chrX 7170085 7170122 -169804018 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 337 158 66 0 chrX 7170272 7170348 -169803792 - MER53 DNA DNA -4 185 105 353 202 12 0 chrX 7170471 7170555 -169803585 - MER53 DNA DNA -104 85 1 203 278 5 96 chrX 7171173 7171360 -169802780 + CT-rich Low_complexity Low_complexity 6 175 0 183 156 0 0 chrX 7171388 7171420 -169802720 + CT-rich Low_complexity Low_complexity 5 36 0 1496 44 0 6 chrX 7172808 7172988 -169801152 + AluY SINE Alu 16 194 -117 1104 170 0 12 chrX 7173120 7173386 -169800754 + AluJb SINE Alu 6 304 -8 2389 99 3 0 chrX 7173670 7173972 -169800168 + AluSp SINE Alu 1 303 -10 3245 236 93 35 chrX 7174177 7174511 -169799629 - L1ME2 LINE L1 -9 6224 5911 3653 76 0 8 chrX 7174511 7175000 -169799140 - L1PA14 LINE L1 0 6161 5677 3245 236 93 35 chrX 7175000 7175910 -169798230 - L1ME2 LINE L1 -322 5911 5055 2484 55 7 0 chrX 7175910 7176217 -169797923 + AluY SINE Alu 1 309 -2 3245 236 93 35 chrX 7176217 7177077 -169797063 - L1ME2 LINE L1 -1178 5055 4001 2259 91 0 28 chrX 7177077 7177396 -169796744 - AluSx SINE Alu -2 310 1 755 169 26 21 chrX 7177405 7177594 -169796546 - L1ME2 LINE L1 -3057 3158 2969 621 254 41 53 chrX 7177588 7177907 -169796233 - L1ME2 LINE L1 -3898 2498 2184 * 2621 36 0 10 chrX 7178199 7178507 -169795633 + AluY SINE Alu 2 306 -5 543 138 75 0 chrX 7178555 7178649 -169795491 + L1PB4 LINE L1 6049 6149 -7 2358 60 0 0 chrX 7178943 7179269 -169794871 - AluY SINE Alu 0 326 1 198 328 0 0 chrX 7180872 7180936 -169793204 + MIR3 SINE MIR 142 205 -3 613 176 72 93 chrX 7181291 7181484 -169792656 - MER5A DNA MER1_type 0 189 1 2374 96 0 13 chrX 7181653 7181967 -169792173 + AluSq SINE Alu 1 310 -3 2274 129 0 0 chrX 7183185 7183495 -169790645 - AluSx SINE Alu -2 310 1 25 0 0 0 chrX 7183658 7183683 -169790457 + AT_rich Low_complexity Low_complexity 1 25 0 1838 144 14 0 chrX 7184718 7185002 -169789138 + AluJb SINE Alu 6 293 -19 2261 35 43 3 chrX 7185232 7185514 -169788626 + AluY SINE Alu 1 293 -18 722 209 0 8 chrX 7187150 7187284 -169786856 - FLAM_A SINE Alu 0 133 1 42058 41 1 0 chrX 7187860 7194012 -169780128 - L1PA4 LINE L1 0 6155 1 2028 130 3 17 chrX 7195447 7195746 -169778394 + AluJb SINE Alu 4 298 -14 210 213 0 0 chrX 7195746 7195785 -169778355 + CT-rich Low_complexity Low_complexity 7 48 0 224 269 60 15 chrX 7195803 7195870 -169778270 - MER5A DNA MER1_type 0 189 120 871 137 33 93 chrX 7195874 7195937 -169778203 - MER5A DNA MER1_type -2 187 122 2425 97 0 0 chrX 7195937 7196247 -169777893 + AluSg SINE Alu 1 310 0 871 137 33 93 chrX 7196247 7196366 -169777774 - MER5A DNA MER1_type -67 122 16 3447 151 15 3 chrX 7196367 7196955 -169777185 - MER50 LTR ERV1 -130 604 10 1075 188 42 14 chrX 7197039 7197252 -169776888 - MER20 DNA MER1_type 0 219 1 220 189 0 0 chrX 7198391 7198428 -169775712 + GA-rich Low_complexity Low_complexity 4 40 0 23 54 0 0 chrX 7198563 7198600 -169775540 + AT_rich Low_complexity Low_complexity 1 37 0 373 182 13 0 chrX 7200039 7200116 -169774024 - MER116 DNA Mariner -2 78 1 561 213 128 16 chrX 7201586 7201774 -169772366 + MLT1J1 LTR MaLR 3 211 -235 383 282 6 70 chrX 7201791 7201947 -169772193 + MLT1J2 LTR MaLR 245 390 -60 2705 88 11 13 chrX 7202344 7202720 -169771420 - THE1C LTR MaLR 0 375 1 1106 158 0 36 chrX 7202899 7203095 -169771045 + MER20 DNA MER1_type 31 219 0 427 390 8 0 chrX 7203096 7203219 -169770921 + L2 LINE L2 3149 3272 0 649 272 59 37 chrX 7203272 7203492 -169770648 + MIR SINE MIR 34 262 0 336 331 97 6 chrX 7203506 7203681 -169770459 - MIR SINE MIR -6 256 66 2198 88 0 0 chrX 7204010 7204284 -169769856 + AluSg1 SINE Alu 1 274 -35 189 0 0 0 chrX 7204285 7204306 -169769834 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 7204305 7204332 -169769808 + (TG)n Simple_repeat Simple_repeat 2 28 0 407 152 13 0 chrX 7204332 7204411 -169769729 + (TA)n Simple_repeat Simple_repeat 2 81 0 2112 114 0 3 chrX 7205398 7205688 -169768452 - AluSx SINE Alu -23 289 1 1684 198 27 32 chrX 7205970 7206343 -169767797 - MLT1A2 LTR MaLR 0 374 4 2040 150 0 3 chrX 7208502 7208802 -169765338 - AluJb SINE Alu -13 299 1 2411 81 3 0 chrX 7208950 7209246 -169764894 + AluSp SINE Alu 1 297 -16 481 191 106 176 chrX 7209846 7210448 -169763692 - MER34 LTR ERV1 -5 560 1 940 123 0 64 chrX 7211099 7211270 -169762870 + MER20 DNA MER1_type 1 160 -59 714 97 111 7 chrX 7212294 7212438 -169761702 - MER33 DNA MER1_type 0 363 205 4209 137 4 13 chrX 7212439 7213156 -169760984 - MER50 LTR ERV1 -23 711 1 603 159 139 20 chrX 7213156 7213307 -169760833 - MER33 DNA MER1_type -155 169 1 3489 113 116 62 chrX 7213334 7213645 -169760495 - LTR8A LTR ERV1 0 727 434 1928 156 0 7 chrX 7213645 7213940 -169760200 + AluJb SINE Alu 1 293 -19 3489 113 116 62 chrX 7213940 7214316 -169759824 - LTR8A LTR ERV1 -293 434 3 188 263 74 84 chrX 7214405 7214500 -169759640 + L2 LINE L2 2916 3009 -263 360 253 71 33 chrX 7214529 7214711 -169759429 - MER34 LTR ERV1 -1 541 353 239 263 11 32 chrX 7214992 7215087 -169759053 - MER34 LTR ERV1 -409 133 41 403 331 7 29 chrX 7215216 7215355 -169758785 + L2 LINE L2 3136 3271 -1 1964 164 10 0 chrX 7215580 7215878 -169758262 + AluJb SINE Alu 1 301 -11 719 215 6 0 chrX 7216282 7216443 -169757697 + MER33 DNA MER1_type 1 154 -102 1617 101 0 14 chrX 7216443 7216660 -169757480 - AluSq SINE Alu -19 294 81 4409 166 57 56 chrX 7216660 7217730 -169756410 - MER11C LTR ERVK 0 1071 1 686 70 0 0 chrX 7217730 7217816 -169756324 - AluSq SINE Alu -226 86 1 816 143 34 11 chrX 7217816 7217991 -169756149 + MER33 DNA MER1_type 185 363 0 437 202 11 0 chrX 7218323 7218412 -169755728 - MIR3 SINE MIR -37 171 82 464 348 17 6 chrX 7218753 7218934 -169755206 + MIR SINE MIR 32 214 -48 217 320 0 0 chrX 7219447 7219547 -169754593 + (TA)n Simple_repeat Simple_repeat 2 101 0 1883 129 46 40 chrX 7219549 7219920 -169754220 + THE1C LTR MaLR 3 375 0 308 286 61 0 chrX 7220026 7220124 -169754016 - MLT1J2 LTR MaLR -148 302 199 424 49 49 0 chrX 7220212 7220273 -169753867 - LTR23 LTR ERV1 -373 64 1 385 314 99 45 chrX 7220410 7220833 -169753307 + L1MB8 LINE L1 4942 5387 -759 614 208 0 0 chrX 7220935 7221041 -169753099 + FLAM_A SINE Alu 23 128 -14 1676 172 0 27 chrX 7221053 7221349 -169752791 + AluJb SINE Alu 1 288 -24 300 274 104 0 chrX 7221380 7221515 -169752625 + L1MB8 LINE L1 5523 5671 -450 746 333 61 12 chrX 7222030 7222456 -169751684 + LTR16A LTR ERVL 4 450 0 541 167 34 4 chrX 7222477 7222605 -169751535 - LTR49 LTR ERV1 0 642 418 405 70 0 0 chrX 7223148 7223205 -169750935 + (TG)n Simple_repeat Simple_repeat 1 57 0 4430 83 48 3 chrX 7223208 7223833 -169750307 - MER39B LTR ERV1 0 653 1 999 220 143 9 chrX 7223974 7224324 -169749816 + L1MB8 LINE L1 5777 6173 -5 2256 86 3 29 chrX 7224363 7224745 -169749395 + AluSc SINE Alu 1 374 0 2092 114 44 0 chrX 7225003 7225301 -169748839 + AluSx SINE Alu 2 312 0 1800 174 16 3 chrX 7225504 7225808 -169748332 - AluJo SINE Alu -4 308 1 29 0 0 0 chrX 7226301 7226330 -169747810 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 7226568 7226590 -169747550 + AT_rich Low_complexity Low_complexity 1 22 0 212 122 24 0 chrX 7226715 7226756 -169747384 + A-rich Low_complexity Low_complexity 3 44 0 895 126 0 16 chrX 7226920 7227047 -169747093 - FLAM_C SINE Alu -7 126 2 262 146 0 0 chrX 7227132 7227173 -169746967 - L2 LINE L2 -5 3308 3268 1572 251 109 17 chrX 7227298 7227829 -169746311 + MLT1G1 LTR MaLR 8 587 -8 1528 147 55 22 chrX 7227995 7228319 -169745821 - AluJb SINE Alu 0 333 1 274 247 14 0 chrX 7228322 7228395 -169745745 - L1ME LINE L1 -459 5662 5589 270 282 34 60 chrX 7229173 7229290 -169744850 - MIR SINE MIR -50 212 99 1016 224 9 9 chrX 7229405 7229628 -169744512 - MER58A DNA MER1_type -1 223 1 1291 277 109 35 chrX 7229694 7230419 -169743721 - L1MC4a LINE L1 -1773 6035 5257 251 227 45 0 chrX 7233347 7233435 -169740705 + (TA)n Simple_repeat Simple_repeat 2 93 0 470 276 70 22 chrX 7235138 7235323 -169738817 - MIR SINE MIR -6 256 63 1716 149 86 122 chrX 7236023 7236086 -169738054 - MLT1D LTR MaLR 0 505 441 1714 163 58 4 chrX 7236086 7236362 -169737778 + AluJo SINE Alu 1 291 -21 1716 149 86 122 chrX 7236362 7236822 -169737318 - MLT1D LTR MaLR -64 441 1 2108 139 0 0 chrX 7236833 7237127 -169737013 - AluJb SINE Alu -16 296 3 711 272 100 21 chrX 7237587 7237826 -169736314 - MIR SINE MIR -3 259 2 186 277 0 0 chrX 7238894 7238941 -169735199 - L2 LINE L2 -3 3310 3264 2899 16 0 0 chrX 7239816 7240134 -169734006 - AluYb8 SINE Alu 0 318 1 1230 261 69 22 chrX 7242020 7242426 -169731714 - L3b LINE CR1 -57 1526 1102 183 287 0 111 chrX 7242663 7242771 -169731369 - L3 LINE CR1 -801 776 681 200 233 0 33 chrX 7242934 7242994 -169731146 + CT-rich Low_complexity Low_complexity 4 61 0 2133 134 0 0 chrX 7243244 7243543 -169730597 + AluJo SINE Alu 1 299 -13 1486 159 4 0 chrX 7244350 7244602 -169729538 + L1MB8 LINE L1 5534 5786 -392 2086 124 0 25 chrX 7244603 7244917 -169729223 + AluSq SINE Alu 2 307 -6 248 288 47 88 chrX 7245312 7245482 -169728658 - MIR SINE MIR -70 192 30 251 28 28 0 chrX 7245526 7245562 -169728578 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 1622 160 59 31 chrX 7245576 7245963 -169728177 + L1MB8 LINE L1 5781 6178 0 248 288 47 88 chrX 7246178 7246348 -169727792 + MIR SINE MIR 30 192 -70 2287 101 3 0 chrX 7246743 7247049 -169727091 - AluSp SINE Alu -6 307 1 2398 81 0 3 chrX 7247460 7247757 -169726383 + AluY SINE Alu 2 297 -14 461 229 23 0 chrX 7247757 7247888 -169726252 - L1MD2 LINE L1 -30 6329 6196 324 0 0 0 chrX 7250607 7250643 -169723497 + (T)n Simple_repeat Simple_repeat 1 36 0 1577 235 89 25 chrX 7251716 7252154 -169721986 - LTR16C LTR ERVL 0 491 26 881 252 95 56 chrX 7253020 7253464 -169720676 - MLT1H LTR MaLR 0 549 89 356 254 106 14 chrX 7253828 7253970 -169720170 - HAL1 LINE L1 -710 1797 1643 535 249 50 50 chrX 7254005 7254206 -169719934 + L2 LINE L2 3113 3313 0 199 255 29 88 chrX 7254278 7254354 -169719786 + L2 LINE L2 3216 3286 -27 2215 119 0 45 chrX 7254354 7254707 -169719433 + MER1B DNA MER1_type 1 337 0 199 255 29 88 chrX 7254707 7254732 -169719408 + L2 LINE L2 3286 3311 -2 989 272 106 44 chrX 7255941 7256769 -169717371 - L2 LINE L2 -9 3304 2430 605 311 116 19 chrX 7257043 7257144 -169716996 + L3 LINE CR1 1026 1116 -461 1818 169 0 7 chrX 7257144 7257446 -169716694 + AluJb SINE Alu 1 300 -12 605 311 116 19 chrX 7257446 7257662 -169716478 + L3 LINE CR1 1116 1374 -203 855 284 85 31 chrX 7257675 7258097 -169716043 + MLT1J2 LTR MaLR 6 450 0 245 276 26 0 chrX 7258101 7258177 -169715963 + L3 LINE CR1 1383 1460 -117 1533 204 127 31 chrX 7258208 7258722 -169715418 - LTR48B LTR ERV1 0 644 82 326 237 6 0 chrX 7258782 7258874 -169715266 - MER34 LTR ERV1 -446 96 3 245 233 211 0 chrX 7260073 7260206 -169713934 - Zaphod DNA AcHobo -3283 748 588 525 244 49 44 chrX 7260212 7260417 -169713723 - MLT1J2 LTR MaLR -244 206 1 306 244 12 12 chrX 7260770 7260856 -169713284 - MLT1L LTR MaLR -110 505 420 227 286 31 57 chrX 7262894 7263086 -169711054 - LTR16C LTR ERVL 0 491 305 2346 133 50 0 chrX 7263484 7263868 -169710272 + MER57A LTR ERV1 1 403 0 246 336 53 0 chrX 7263887 7264000 -169710140 - MIR3 SINE MIR -86 122 4 38733 64 12 2 chrX 7264904 7270986 -169703154 - L1PA5 LINE L1 0 6154 11 778 187 18 0 chrX 7271101 7271267 -169702873 - L1MD3 LINE L1 -5 7990 7822 1842 101 0 0 chrX 7271422 7271659 -169702481 - AluSg/x SINE Alu -5 307 71 264 59 0 0 chrX 7272151 7272185 -169701955 + (CA)n Simple_repeat Simple_repeat 1 34 0 297 0 0 0 chrX 7272253 7272286 -169701854 + (TA)n Simple_repeat Simple_repeat 2 34 0 1096 233 64 86 chrX 7275195 7275332 -169698808 - MER34 LTR ERV1 -4 538 400 1954 131 0 21 chrX 7275332 7275622 -169698518 + AluJo SINE Alu 15 298 -14 1096 233 64 86 chrX 7275622 7276034 -169698106 - MER34 LTR ERV1 -142 400 1 276 264 0 0 chrX 7276080 7276133 -169698007 + MER45 DNA AcHobo 1 53 -125 1031 174 28 19 chrX 7276143 7276356 -169697784 - MER58 DNA MER1_type -126 215 1 1031 156 12 0 chrX 7276370 7276537 -169697603 + MER5A DNA MER1_type 21 189 0 901 166 12 12 chrX 7276547 7276710 -169697430 + MER5B DNA MER1_type 3 165 -13 353 187 17 0 chrX 7276722 7276797 -169697343 - MIR SINE MIR -65 143 67 912 230 87 9 chrX 7277561 7277791 -169696349 + MIR SINE MIR 15 262 0 328 330 37 0 chrX 7277830 7277939 -169696201 - MIR SINE MIR -148 114 2 985 244 125 72 chrX 7278099 7278995 -169695145 + L2 LINE L2 2362 3307 -6 1903 145 7 10 chrX 7279571 7279867 -169694273 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7280289 7280316 -169693824 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 522 229 123 29 chrX 7281952 7282196 -169691944 - HAL1 LINE L1 0 2507 2241 573 284 88 57 chrX 7282229 7282569 -169691571 - MLT1J LTR MaLR -7 504 141 976 161 0 0 chrX 7282569 7282760 -169691380 + FAM SINE Alu 1 56 0 573 284 88 57 chrX 7282760 7282906 -169691234 - MLT1J LTR MaLR -370 141 1 261 263 44 18 chrX 7282922 7283036 -169691104 - HAL1 LINE L1 -389 2118 2002 866 269 69 19 chrX 7283084 7283463 -169690677 - HAL1 LINE L1 -607 1900 1503 27 0 0 0 chrX 7283526 7283553 -169690587 + AT_rich Low_complexity Low_complexity 1 27 0 1505 160 183 9 chrX 7283642 7283980 -169690160 + MLT2C1 LTR ERVL 1 397 0 41 58 0 0 chrX 7283989 7284058 -169690082 + AT_rich Low_complexity Low_complexity 1 69 0 1575 160 0 26 chrX 7284192 7284460 -169689680 + AluJb SINE Alu 35 295 -17 242 323 97 0 chrX 7284839 7284932 -169689208 - MIR SINE MIR -76 132 31 231 182 0 0 chrX 7285333 7285377 -169688763 + MER116 DNA Mariner 11 54 -26 1816 148 16 23 chrX 7285717 7286106 -169688034 - AluJb SINE Alu 0 387 1 1189 170 18 22 chrX 7286298 7286521 -169687619 - MLT1A1 LTR MaLR -11 354 133 268 350 56 33 chrX 7286861 7287041 -169687099 - MER5A DNA MER1_type 0 189 6 1210 134 31 0 chrX 7287041 7287235 -169686905 + MER20 DNA MER1_type 20 219 0 22 35 0 0 chrX 7288799 7288828 -169685312 + GC_rich Low_complexity Low_complexity 1 29 0 304 309 54 27 chrX 7291745 7291894 -169682246 - MIR SINE MIR -50 212 60 265 310 69 26 chrX 7294940 7295056 -169679084 + L2 LINE L2 3136 3256 -16 378 94 0 0 chrX 7295268 7295332 -169678808 + (TC)n Simple_repeat Simple_repeat 1 64 0 297 0 0 0 chrX 7295332 7295365 -169678775 + (TA)n Simple_repeat Simple_repeat 1 33 0 2446 40 10 7 chrX 7298487 7298786 -169675354 + AluY SINE Alu 1 300 -11 2203 81 7 55 chrX 7299163 7299473 -169674667 - AluSq SINE Alu -18 295 1 1668 52 64 0 chrX 7299565 7299798 -169674342 + L1PB1 LINE L1 5534 5781 -370 261 180 0 0 chrX 7299799 7299849 -169674291 + (TG)n Simple_repeat Simple_repeat 2 51 0 2527 103 0 5 chrX 7299867 7300235 -169673905 + L1PB1 LINE L1 5785 6150 -1 223 248 8 39 chrX 7300241 7300253 -169673887 + A-rich Low_complexity Low_complexity 2 13 -113 217 49 0 49 chrX 7300253 7300294 -169673846 + (TTAAA)n Simple_repeat Simple_repeat 3 41 0 223 248 8 39 chrX 7300294 7300410 -169673730 + A-rich Low_complexity Low_complexity 13 126 0 238 179 36 0 chrX 7300449 7300505 -169673635 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chrX 7300723 7300745 -169673395 + AT_rich Low_complexity Low_complexity 1 22 0 574 276 108 20 chrX 7301061 7301311 -169672829 - L3 LINE CR1 -514 1063 792 2093 145 22 11 chrX 7301711 7302076 -169672064 - MER31-int LTR ERV1 -4400 536 168 26 30 0 0 chrX 7302249 7302282 -169671858 + AT_rich Low_complexity Low_complexity 1 33 0 210 64 21 43 chrX 7302784 7302831 -169671309 + (AGGGGG)n Simple_repeat Simple_repeat 5 50 0 207 325 98 32 chrX 7304109 7304232 -169669908 - L2 LINE L2 -3 3269 3139 1127 153 0 6 chrX 7304248 7304418 -169669722 + AluJb SINE Alu 1 169 -143 230 224 0 52 chrX 7304578 7304636 -169669504 - L2 LINE L2 -17 3296 3242 2198 47 18 4 chrX 7304852 7305161 -169668979 - AluY SINE Alu 0 313 1 1943 106 7 18 chrX 7305161 7305466 -169668674 - AluSq SINE Alu 0 313 38 3555 113 25 7 chrX 7305470 7306034 -169668106 - Tigger3b DNA MER2_type -657 574 1 474 191 38 38 chrX 7306034 7306164 -169667976 + MER34C LTR ERV1 456 585 0 1743 168 135 25 chrX 7306164 7306559 -169667581 + MLT1D LTR MaLR 67 505 0 188 279 49 0 chrX 7306569 7306630 -169667510 - L2 LINE L2 -944 2370 2307 325 328 62 62 chrX 7306766 7306854 -169667286 - L2 LINE L2 -1180 2134 2047 1713 167 46 7 chrX 7306854 7307136 -169667004 - AluJb SINE Alu -18 294 2 325 328 62 62 chrX 7307136 7307562 -169666578 - L2 LINE L2 -1266 2048 1620 2179 114 0 25 chrX 7307615 7307930 -169666210 - AluSx SINE Alu -5 307 1 2178 116 36 18 chrX 7308392 7308721 -169665419 - MER1B DNA MER1_type -2 335 1 475 329 121 26 chrX 7309801 7310114 -169664026 + L2 LINE L2 2397 2739 -575 346 187 93 173 chrX 7310182 7310471 -169663669 + MER5C DNA MER1_type 14 279 -45 809 201 65 0 chrX 7310495 7310664 -169663476 + MER5A DNA MER1_type 10 189 0 630 183 36 29 chrX 7310698 7310835 -169663305 + MER3 DNA MER1_type 72 209 0 32 26 0 0 chrX 7311668 7311707 -169662433 + AT_rich Low_complexity Low_complexity 1 39 0 2469 88 0 0 chrX 7312103 7312410 -169661730 - AluSx SINE Alu -5 307 1 11899 27 6 10 chrX 7312471 7314649 -169659491 + L1PA4 LINE L1 3971 6154 -1 24 85 0 0 chrX 7315008 7315067 -169659073 + AT_rich Low_complexity Low_complexity 1 59 0 252 122 0 0 chrX 7315129 7315170 -169658970 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 498 75 0 0 chrX 7315170 7315237 -169658903 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 754 139 47 31 chrX 7315246 7315375 -169658765 - FLAM_C SINE Alu -2 131 1 282 281 165 16 chrX 7315631 7315752 -169658388 - MIR SINE MIR -96 166 28 23 54 0 0 chrX 7315868 7315905 -169658235 + AT_rich Low_complexity Low_complexity 1 37 0 232 365 103 19 chrX 7316059 7316215 -169657925 - L2 LINE L2 0 3272 3104 1007 157 37 42 chrX 7316250 7316467 -169657673 + MER20 DNA MER1_type 1 216 -3 981 108 23 0 chrX 7316513 7316643 -169657497 + AluJb SINE Alu 1 133 -179 265 42 21 42 chrX 7316643 7316691 -169657449 + (CAAAAA)n Simple_repeat Simple_repeat 1 47 0 937 185 0 0 chrX 7316703 7316854 -169657286 + AluJb SINE Alu 129 279 -33 225 0 0 0 chrX 7316854 7316879 -169657261 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 1798 117 51 18 chrX 7317010 7317380 -169656760 + Tigger3(Golem) DNA MER2_type 1 3028 -1 236 318 234 7 chrX 7317521 7317815 -169656325 + L2 LINE L2 2715 3060 -212 740 145 192 47 chrX 7317833 7318028 -169656112 - AluJo SINE Alu 0 305 86 372 279 94 41 chrX 7318035 7318279 -169655861 + LTR33 LTR ERVL 25 281 -240 230 262 24 0 chrX 7318309 7318393 -169655747 + LTR33 LTR ERVL 373 458 -63 366 331 44 7 chrX 7318817 7318953 -169655187 - L2 LINE L2 -7 3265 3125 210 71 0 0 chrX 7319444 7319472 -169654668 + (TG)n Simple_repeat Simple_repeat 1 28 0 925 240 83 0 chrX 7319738 7319942 -169654198 - MER58A DNA MER1_type 0 224 4 21 0 0 0 chrX 7320209 7320230 -169653910 + AT_rich Low_complexity Low_complexity 1 21 0 2093 103 22 3 chrX 7320250 7320569 -169653571 + L1MB7 LINE L1 5841 6165 -19 269 200 0 33 chrX 7320600 7320660 -169653480 + L1ME LINE L1 5551 5608 -513 245 284 95 21 chrX 7320916 7321011 -169653129 - MIR SINE MIR -48 214 113 223 298 235 9 chrX 7321145 7321460 -169652680 + L2 LINE L2 2578 2963 -351 206 256 13 0 chrX 7321586 7321664 -169652476 + CT-rich Low_complexity Low_complexity 4 82 0 217 272 291 10 chrX 7321670 7321773 -169652367 + L2 LINE L2 3141 3272 0 1087 157 13 57 chrX 7322664 7322893 -169651247 - MER20 DNA MER1_type 0 219 1 213 255 41 92 chrX 7326272 7326370 -169647770 + MIR3 SINE MIR 70 162 -46 230 220 0 51 chrX 7326370 7326429 -169647711 + GA-rich Low_complexity Low_complexity 3 58 0 335 264 31 78 chrX 7327459 7327588 -169646552 - MIR SINE MIR -108 154 32 1857 240 103 20 chrX 7327676 7328222 -169645918 + MLT1E LTR MaLR 1 591 -2 21 0 0 0 chrX 7328477 7328498 -169645642 + AT_rich Low_complexity Low_complexity 1 21 0 232 339 126 24 chrX 7329117 7329244 -169644896 + MIR SINE MIR 27 166 -96 5778 114 18 10 chrX 7329249 7329566 -169644574 + L1PA16 LINE L1 4872 5185 -981 2133 113 7 13 chrX 7329566 7329876 -169644264 + AluSc SINE Alu 1 308 -1 5778 114 18 10 chrX 7329876 7330864 -169643276 + L1PA16 LINE L1 5185 6166 0 21 0 0 0 chrX 7330901 7330922 -169643218 + AT_rich Low_complexity Low_complexity 1 21 0 2436 82 0 0 chrX 7331012 7331315 -169642825 - AluSg SINE Alu -7 303 1 3706 194 25 55 chrX 7331329 7332734 -169641406 - L1MCa LINE L1 -4861 1046 337 7789 17 0 2 chrX 7332734 7333944 -169640196 - L1PA3 LINE L1 0 6155 4947 3706 194 25 55 chrX 7333944 7334266 -169639874 - L1MCa LINE L1 -5570 337 7 2317 102 0 3 chrX 7334626 7334921 -169639219 + AluSx SINE Alu 1 294 -18 200 270 132 53 chrX 7334921 7334963 -169639177 + L3 LINE CR1 1079 1116 -461 2521 171 85 43 chrX 7334963 7335561 -169638579 - MLT1E2 LTR MaLR -2 624 2 200 270 132 53 chrX 7335561 7335707 -169638433 + L3 LINE CR1 1116 1282 -295 399 302 60 9 chrX 7335721 7335837 -169638303 - L2 LINE L2 -3 3269 3148 6860 33 8 0 chrX 7336318 7337619 -169636521 + L1PA5 LINE L1 4868 6180 0 4167 138 19 19 chrX 7337659 7338361 -169635779 - L1MB4 LINE L1 -1 6179 5475 261 0 0 0 chrX 7338361 7338390 -169635750 + (TG)n Simple_repeat Simple_repeat 2 30 0 4167 138 19 19 chrX 7338390 7338445 -169635695 - L1MB4 LINE L1 -704 5476 5422 379 265 29 10 chrX 7338659 7338761 -169635379 + L3 LINE CR1 1405 1508 -69 524 273 162 15 chrX 7338987 7339185 -169634955 - MIR SINE MIR -5 257 31 198 171 0 0 chrX 7340140 7340181 -169633959 + CT-rich Low_complexity Low_complexity 1 41 0 336 249 117 121 chrX 7340987 7341244 -169632896 - MIR SINE MIR -6 256 1 1703 175 24 15 chrX 7341524 7341862 -169632278 - MER58B DNA MER1_type 0 341 1 620 174 16 0 chrX 7342075 7342196 -169631944 - L1MD2 LINE L1 0 6359 6237 324 102 0 0 chrX 7342241 7342290 -169631850 + (TG)n Simple_repeat Simple_repeat 1 49 0 2201 186 32 0 chrX 7342315 7342756 -169631384 - L1MD1 LINE L1 -183 6059 5605 200 252 30 126 chrX 7342893 7343028 -169631112 - MIR SINE MIR -63 145 24 617 262 12 18 chrX 7343616 7343780 -169630360 + MER5A DNA MER1_type 11 173 -16 33 0 0 0 chrX 7343828 7343861 -169630279 + AT_rich Low_complexity Low_complexity 1 33 0 959 103 7 0 chrX 7345158 7345304 -169628836 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 2010 118 4 0 chrX 7345304 7345583 -169628557 - AluSx SINE Alu -32 280 1 396 289 191 36 chrX 7346398 7346623 -169627517 - MIR SINE MIR -1 261 2 222 176 0 0 chrX 7346806 7346857 -169627283 + CT-rich Low_complexity Low_complexity 2 52 0 276 91 0 0 chrX 7346869 7346913 -169627227 + (GA)n Simple_repeat Simple_repeat 1 44 0 214 296 0 0 chrX 7349444 7349498 -169624642 + CT-rich Low_complexity Low_complexity 1 54 0 200 94 0 31 chrX 7349663 7349695 -169624445 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 6622 76 23 3 chrX 7349768 7351166 -169622974 + L1PA11 LINE L1 4754 6174 0 183 80 0 0 chrX 7351279 7351304 -169622836 + (TG)n Simple_repeat Simple_repeat 2 26 0 209 173 39 0 chrX 7351307 7351359 -169622781 + (TA)n Simple_repeat Simple_repeat 2 55 0 400 317 122 35 chrX 7353536 7353766 -169620374 - MIR SINE MIR 0 262 13 325 367 53 20 chrX 7353822 7354067 -169620073 + L2 LINE L2 2422 2674 -640 462 133 0 0 chrX 7354073 7354148 -169619992 + MADE1 DNA Mariner 6 80 0 244 280 156 82 chrX 7354271 7354553 -169619587 + L2 LINE L2 3008 3310 -3 244 276 13 13 chrX 7354558 7354634 -169619506 + CT-rich Low_complexity Low_complexity 1 76 0 433 285 0 0 chrX 7354894 7355017 -169619123 + HsTC2 DNA Tc2 79 201 -1697 267 54 0 0 chrX 7355136 7355173 -169618967 + (GA)n Simple_repeat Simple_repeat 2 38 0 355 277 36 0 chrX 7355204 7355316 -169618824 + HsTC2 DNA Tc2 1017 1132 -766 231 145 26 79 chrX 7355538 7355614 -169618526 + HsTC2 DNA Tc2 1669 1740 -158 377 206 122 8 chrX 7355678 7355809 -169618331 + HsTC2 DNA Tc2 1745 1890 -8 369 309 54 30 chrX 7356496 7356664 -169617476 - MIR SINE MIR -6 256 85 23 54 0 0 chrX 7357167 7357204 -169616936 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 7357372 7357394 -169616746 + AT_rich Low_complexity Low_complexity 1 22 0 253 241 96 36 chrX 7358044 7358127 -169616013 + L2 LINE L2 3182 3269 -3 24 0 0 0 chrX 7360292 7360316 -169613824 + AT_rich Low_complexity Low_complexity 1 24 0 258 393 61 0 chrX 7362596 7362759 -169611381 - MIR SINE MIR -56 206 34 2305 109 0 0 chrX 7363378 7363689 -169610451 - AluSx SINE Alu -1 311 1 230 295 162 29 chrX 7364157 7364262 -169609878 + MIR3 SINE MIR 5 123 -85 363 351 8 0 chrX 7364327 7364458 -169609682 - L2 LINE L2 -1 3312 3181 528 300 24 15 chrX 7365064 7365352 -169608788 - MLT1I LTR MaLR 0 409 83 417 324 60 42 chrX 7365734 7365950 -169608190 + L3 LINE CR1 607 826 -751 182 219 203 16 chrX 7366127 7366191 -169607949 + L3 LINE CR1 1068 1143 -434 992 184 87 5 chrX 7366227 7366434 -169607706 - MER58A DNA MER1_type 0 224 1 189 0 0 0 chrX 7366587 7366608 -169607532 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 217 364 17 17 chrX 7366866 7366984 -169607156 - MIR SINE MIR -61 147 30 988 284 61 77 chrX 7367320 7367397 -169606743 + L2 LINE L2 2537 2614 -699 999 168 42 37 chrX 7367397 7367611 -169606529 - MER20 DNA MER1_type -4 215 1 988 284 61 77 chrX 7367611 7367725 -169606415 + L2 LINE L2 2614 2728 -585 306 0 0 0 chrX 7367725 7367759 -169606381 + (CA)n Simple_repeat Simple_repeat 2 35 0 2806 56 0 6 chrX 7367759 7368118 -169606022 + L1PB1 LINE L1 5793 6149 -2 988 284 61 77 chrX 7368118 7368381 -169605759 + L2 LINE L2 2727 2967 -346 1886 203 35 60 chrX 7368381 7368899 -169605241 + MLT1D LTR MaLR 1 505 0 988 284 61 77 chrX 7368899 7369079 -169605061 + L2 LINE L2 2967 3148 -165 184 244 22 0 chrX 7370841 7370886 -169603254 - L2 LINE L2 -4 3268 3223 1693 187 3 16 chrX 7370985 7371300 -169602840 - AluJb SINE Alu -1 311 1 1481 189 6 6 chrX 7371352 7371664 -169602476 + L1MD3 LINE L1 7474 7785 -210 1105 180 0 3 chrX 7371665 7371876 -169602264 + AluJb SINE Alu 2 283 -29 617 13 0 25 chrX 7371891 7371970 -169602170 + (GAAA)n Simple_repeat Simple_repeat 2 78 0 679 205 78 0 chrX 7371970 7372175 -169601965 + L1MD3 LINE L1 7775 7995 0 214 270 30 20 chrX 7372228 7372328 -169601812 + (CAGAGA)n Simple_repeat Simple_repeat 6 106 0 218 194 48 0 chrX 7373805 7373867 -169600273 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 470 99 33 211 chrX 7373872 7374024 -169600116 - MER20 DNA MER1_type -5 214 90 24 53 0 0 chrX 7374038 7374076 -169600064 + AT_rich Low_complexity Low_complexity 1 38 0 266 289 40 0 chrX 7375156 7375232 -169598908 + L2 LINE L2 3230 3308 -5 636 352 36 0 chrX 7375270 7375489 -169598651 + MIR SINE MIR 19 245 -17 240 312 113 28 chrX 7375709 7375850 -169598290 + MIR SINE MIR 86 238 -24 210 225 0 0 chrX 7376327 7376367 -169597773 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 765 199 8 0 chrX 7377828 7377959 -169596181 + FLAM_A SINE Alu 1 132 -1 2423 152 79 31 chrX 7377984 7378466 -169595674 + MLT1D LTR MaLR 1 505 0 358 291 26 17 chrX 7378590 7378707 -169595433 + MER5A DNA MER1_type 29 146 -43 2146 204 77 54 chrX 7378710 7378970 -169595170 - MLT1E LTR MaLR 0 593 341 830 125 0 21 chrX 7378970 7379114 -169595026 - L1PB1 LINE L1 0 6151 6011 2146 204 77 54 chrX 7379114 7379412 -169594728 - MLT1E LTR MaLR -252 341 22 448 269 174 50 chrX 7380002 7380359 -169593781 + MLT1J2 LTR MaLR 46 446 -4 254 245 157 20 chrX 7380998 7381100 -169593040 - MIR SINE MIR -129 133 18 206 287 61 12 chrX 7381252 7381416 -169592724 + (TATATG)n Simple_repeat Simple_repeat 3 174 0 182 250 163 25 chrX 7381428 7381508 -169592632 - MIR SINE MIR -147 115 25 213 39 0 0 chrX 7381871 7381897 -169592243 + (TA)n Simple_repeat Simple_repeat 2 27 0 198 103 0 0 chrX 7382005 7382034 -169592106 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 888 165 198 0 chrX 7382399 7382581 -169591559 - MER20 DNA MER1_type 0 219 2 259 264 0 66 chrX 7385374 7385465 -169588675 + L2 LINE L2 2545 2629 -685 2287 200 49 9 chrX 7385496 7386027 -169588113 - L1MB8 LINE L1 -13 6165 5614 335 125 0 16 chrX 7386184 7386248 -169587892 - L1MA5 LINE L1 -6 6294 6232 396 343 67 46 chrX 7386278 7386561 -169587579 + L2 LINE L2 2688 2976 -338 572 279 102 26 chrX 7386563 7386789 -169587351 + MIR SINE MIR 7 249 -13 259 389 94 45 chrX 7386777 7387042 -169587098 + L2 LINE L2 2987 3264 -8 * 1080 255 107 41 chrX 7387052 7387539 -169586601 + LTR33 LTR ERVL 1 519 -2 2501 145 20 92 chrX 7388432 7388976 -169585164 - MLT1D LTR MaLR 0 505 1 29 0 0 0 chrX 7388978 7389007 -169585133 + AT_rich Low_complexity Low_complexity 1 29 0 208 274 48 48 chrX 7389731 7389815 -169584325 - L2 LINE L2 -52 3220 3137 601 196 8 15 chrX 7390022 7390155 -169583985 + Charlie7 DNA MER1_type 5 136 -2476 1119 212 83 50 chrX 7390173 7390649 -169583491 - MER39 LTR ERV1 -33 674 1 632 293 94 17 chrX 7390740 7391091 -169583049 + Charlie7 DNA MER1_type 346 723 -1889 235 221 172 0 chrX 7391082 7391204 -169582936 + Charlie7 DNA MER1_type 2416 2558 -54 * 417 39 0 0 chrX 7392534 7392585 -169581555 + (TG)n Simple_repeat Simple_repeat 1 51 0 428 284 25 50 chrX 7394020 7394221 -169579919 + MIR SINE MIR 1 196 -66 217 284 0 63 chrX 7394288 7394383 -169579757 - MIR3 SINE MIR -38 170 82 3855 193 30 42 chrX 7395524 7396419 -169577721 - L1M4 LINE L1 -5149 1393 510 646 319 32 30 chrX 7396608 7397009 -169577131 + MLT1I LTR MaLR 2 403 -6 26734 96 11 14 chrX 7397504 7401605 -169572535 + L1P LINE L1 11 4101 -2045 2149 53 0 0 chrX 7401605 7401870 -169572270 + L1PA6 LINE L1 5889 6154 0 22 56 0 0 chrX 7402151 7402187 -169571953 + AT_rich Low_complexity Low_complexity 1 36 0 2511 122 11 82 chrX 7402244 7402705 -169571435 + MSTC LTR MaLR 1 428 0 323 275 12 69 chrX 7402863 7403023 -169571117 - L1MC4a LINE L1 -1870 5938 5788 2098 105 0 66 chrX 7403252 7403586 -169570554 + AluSx SINE Alu 1 312 0 746 216 18 48 chrX 7403734 7403961 -169570179 - MER74A LTR ERVL 0 558 339 2019 229 54 0 chrX 7404148 7404685 -169569455 - L1ME1 LINE L1 -122 6044 5479 266 302 57 19 chrX 7405068 7405174 -169568966 + MLT1J LTR MaLR 378 487 -24 290 330 141 10 chrX 7405494 7405700 -169568440 + MIR SINE MIR 12 244 -18 539 315 25 38 chrX 7406306 7406544 -169567596 + MIR SINE MIR 18 252 -10 * 609 284 37 11 chrX 7406524 7406714 -169567426 - MIR SINE MIR -48 214 20 21 0 0 0 chrX 7407173 7407194 -169566946 + AT_rich Low_complexity Low_complexity 1 21 0 502 208 20 25 chrX 7407558 7408128 -169566012 + (TA)n Simple_repeat Simple_repeat 1 567 0 261 261 29 0 chrX 7408128 7408197 -169565943 + (TATG)n Simple_repeat Simple_repeat 4 74 0 597 165 23 23 chrX 7408198 7408416 -169565724 + (TA)n Simple_repeat Simple_repeat 1 218 0 451 230 60 0 chrX 7408840 7408940 -169565200 + MER81 DNA DNA 1 106 -8 959 281 56 42 chrX 7410000 7410359 -169563781 + LTR16B LTR ERVL 3 366 -98 330 317 17 17 chrX 7412300 7412420 -169561720 + MIR3 SINE MIR 78 197 -11 2174 84 28 0 chrX 7412491 7412775 -169561365 - AluSg SINE Alu -18 292 1 239 173 19 0 chrX 7414342 7414394 -169559746 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 293 96 21 chrX 7414530 7414769 -169559371 + MIR SINE MIR 4 260 -2 353 246 93 0 chrX 7415195 7415313 -169558827 + MER103 DNA DNA 5 133 -33 233 296 17 43 chrX 7415540 7415655 -169558485 + 7SK RNA RNA 10 121 -72 220 297 20 40 chrX 7415848 7415949 -169558191 - MER5A DNA MER1_type -1 188 90 196 304 133 30 chrX 7415849 7415984 -169558156 + MER5A DNA MER1_type 17 165 -24 * 215 336 115 26 chrX 7416004 7416117 -169558023 + MER5B DNA MER1_type 10 132 -46 1060 80 0 7 chrX 7416945 7417095 -169557045 - L1PB1 LINE L1 0 6151 6003 1545 183 123 144 chrX 7417138 7417942 -169556198 - L1MC4a LINE L1 -15 7793 7007 261 111 0 0 chrX 7418092 7418128 -169556012 + Alu SINE Alu 1 36 -272 2113 125 13 0 chrX 7418192 7418497 -169555643 + AluSx SINE Alu 1 309 -3 557 266 8 0 chrX 7418903 7419031 -169555109 - MER58B DNA MER1_type -16 325 197 2408 72 0 0 chrX 7421442 7421735 -169552405 - AluY SINE Alu -18 293 1 324 326 49 56 chrX 7421940 7422084 -169552056 + L2 LINE L2 3115 3257 -15 2428 183 23 2 chrX 7423240 7423727 -169550413 - L1MB7 LINE L1 -19 6165 5669 365 298 16 32 chrX 7423889 7424013 -169550127 + MER5A DNA MER1_type 68 189 0 496 186 20 20 chrX 7424028 7424130 -169550010 + MER5A DNA MER1_type 9 110 -79 4477 125 15 4 chrX 7424148 7425141 -169548999 + L1PA16 LINE L1 4886 5892 -274 690 231 0 66 chrX 7425165 7425347 -169548793 + MER5B DNA MER1_type 5 174 -4 1795 110 140 10 chrX 7425371 7425671 -169548469 - MER1B DNA MER1_type 0 339 1 346 257 23 12 chrX 7425791 7425962 -169548178 + GA-rich Low_complexity Low_complexity 3 175 0 2627 219 53 55 chrX 7426078 7426835 -169547305 - L1ME1 LINE L1 -4 6162 5408 449 278 97 32 chrX 7426904 7427213 -169546927 - L1MC5 LINE L1 -29 7932 7604 1580 11 0 0 chrX 7427741 7427920 -169546220 + L1PA4 LINE L1 5977 6155 0 342 0 0 0 chrX 7427956 7427994 -169546146 + (TG)n Simple_repeat Simple_repeat 2 39 0 957 202 25 15 chrX 7429504 7429702 -169544438 - MER20 DNA MER1_type -14 205 6 1089 264 82 24 chrX 7431059 7431613 -169542527 - L2 LINE L2 -22 3291 2703 826 156 17 165 chrX 7431617 7431854 -169542286 + MER20 DNA MER1_type 1 202 -17 805 294 184 24 chrX 7431854 7432266 -169541874 - L2 LINE L2 -607 2707 2230 297 305 74 68 chrX 7432276 7432466 -169541674 - LTR67 LTR ERVL -10 547 357 1230 272 171 8 chrX 7432738 7433213 -169540927 - L2 LINE L2 -1080 2234 1683 24 53 0 0 chrX 7433276 7433314 -169540826 + AT_rich Low_complexity Low_complexity 1 38 0 315 300 0 30 chrX 7433451 7433551 -169540589 - L1MC4 LINE L1 -1342 6700 6604 7736 177 25 4 chrX 7434105 7435608 -169538532 - L1 LINE L1 -869 5277 3743 703 261 48 0 chrX 7435660 7435867 -169538273 + MER46C DNA MER2_type 113 329 -9 2067 119 0 33 chrX 7436536 7436839 -169537301 + AluSx SINE Alu 1 293 -19 23 68 0 0 chrX 7438454 7438498 -169535642 + AT_rich Low_complexity Low_complexity 1 44 0 227 241 13 57 chrX 7439714 7439872 -169534268 - L1M4c LINE L1 -3819 2563 2413 21 57 0 0 chrX 7440260 7440295 -169533845 + AT_rich Low_complexity Low_complexity 1 35 0 643 306 55 55 chrX 7440387 7440789 -169533351 - L1M4c LINE L1 -852 1891 1288 1882 162 94 110 chrX 7440796 7441297 -169532843 - L1MDa LINE L1 -6031 509 17 704 92 0 0 chrX 7441949 7442047 -169532093 - AluSc SINE Alu -211 98 1 1843 274 83 21 chrX 7442395 7443170 -169530970 - HAL1 LINE L1 -396 2111 1289 590 259 156 18 chrX 7443331 7443555 -169530585 + MLT1J2 LTR MaLR 196 450 0 399 253 113 88 chrX 7443555 7444058 -169530082 - HAL1 LINE L1 -1218 1289 774 309 304 122 33 chrX 7444178 7444359 -169529781 - HAL1 LINE L1 -1901 606 410 554 306 41 59 chrX 7444608 7444997 -169529143 - LTR16C LTR ERVL -57 434 53 212 306 116 75 chrX 7445799 7446240 -169527900 + L2 LINE L2 2814 3272 0 846 107 112 56 chrX 7446402 7446580 -169527560 + MER5A DNA MER1_type 2 189 0 907 206 40 0 chrX 7447507 7447706 -169526434 - MER3 DNA MER1_type -1 208 2 191 36 36 0 chrX 7449090 7449118 -169525022 + (TCC)n Simple_repeat Simple_repeat 3 31 0 583 298 30 0 chrX 7449487 7449618 -169524522 + MER91C DNA MER1_type 1 135 -5 344 296 102 9 chrX 7449655 7449763 -169524377 - L2 LINE L2 0 3313 3196 186 324 152 19 chrX 7450256 7450361 -169523779 + L2 LINE L2 3145 3263 -9 1812 132 88 15 chrX 7452459 7452800 -169521340 - THE1C LTR MaLR -9 366 1 899 290 57 44 chrX 7453390 7453848 -169520292 - LTR16B LTR ERVL 0 464 1 3368 195 70 17 chrX 7454011 7454792 -169519348 - MER99 DNA DNA 0 828 6 823 208 3 15 chrX 7455178 7455486 -169518654 - MLT1A2 LTR MaLR 0 374 1 3525 141 17 7 chrX 7455855 7456431 -169517709 - L1MB7 LINE L1 -23 6161 5580 522 247 110 26 chrX 7456499 7456653 -169517487 - MER5B DNA MER1_type -8 170 4 581 306 52 6 chrX 7456946 7457119 -169517021 - MIR SINE MIR -80 182 2 211 241 24 72 chrX 7457907 7457990 -169516150 - L2 LINE L2 -84 3229 3151 481 220 220 17 chrX 7458235 7458408 -169515732 - MIR SINE MIR -25 237 30 257 73 0 24 chrX 7458472 7458513 -169515627 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 196 264 194 0 chrX 7458514 7458586 -169515554 - L2 LINE L2 -14 3299 3214 182 297 47 16 chrX 7458645 7458709 -169515431 - L2 LINE L2 -66 3206 3141 1856 153 7 0 chrX 7459018 7459293 -169514847 + AluJo SINE Alu 20 296 -16 265 318 77 12 chrX 7460358 7460528 -169513612 + L2 LINE L2 1668 1848 -1466 791 281 116 44 chrX 7461171 7461469 -169512671 + L2 LINE L2 1671 2007 -1307 1921 152 7 13 chrX 7461469 7461804 -169512336 + AluSx SINE Alu 1 312 0 791 281 116 44 chrX 7461804 7461911 -169512229 + L2 LINE L2 2007 2105 -1209 1535 169 4 4 chrX 7461928 7462189 -169511951 - L1MB5 LINE L1 0 6174 5914 334 273 13 0 chrX 7462229 7462306 -169511834 + L2 LINE L2 2574 2651 -663 252 0 0 0 chrX 7462332 7462360 -169511780 + (CA)n Simple_repeat Simple_repeat 2 29 0 898 192 82 0 chrX 7462390 7462619 -169511521 - L1MB7 LINE L1 -191 5963 5715 1439 219 131 59 chrX 7462620 7463132 -169511008 + L2 LINE L2 2103 2651 -663 1242 187 9 5 chrX 7463787 7464001 -169510139 + MER20 DNA MER1_type 1 215 -4 404 239 36 43 chrX 7464695 7464833 -169509307 - MIR3 SINE MIR -31 177 41 198 0 0 0 chrX 7466198 7466220 -169507920 + (A)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chrX 7466739 7466774 -169507366 + AT_rich Low_complexity Low_complexity 1 35 0 288 200 12 50 chrX 7467194 7467274 -169506866 + L2 LINE L2 3231 3307 -6 186 373 124 17 chrX 7467372 7467549 -169506591 - L3b LINE CR1 -12 1571 1376 1116 126 0 18 chrX 7468424 7468632 -169505508 - AluSq SINE Alu 0 326 122 2421 92 0 3 chrX 7468650 7468955 -169505185 - AluSq SINE Alu -9 304 1 1444 182 68 14 chrX 7468958 7469238 -169504902 - AluJb SINE Alu -17 295 1 9311 110 17 1 chrX 7469330 7471267 -169502873 + L1PA16 LINE L1 4046 6004 -162 315 259 47 12 chrX 7472200 7472285 -169501855 - MER5A DNA MER1_type -101 88 1 1962 131 10 16 chrX 7472700 7473012 -169501128 - AluJo SINE Alu -2 310 1 480 245 113 0 chrX 7473674 7473833 -169500307 + MER5B DNA MER1_type 1 177 -1 1372 144 22 10 chrX 7474560 7474927 -169499213 - MSTB2 LTR MaLR 0 457 13 2115 201 38 42 chrX 7475334 7475832 -169498308 + MLT1D LTR MaLR 1 496 -9 2671 46 0 0 chrX 7479463 7479768 -169494372 - AluY SINE Alu -6 305 1 207 0 0 0 chrX 7479853 7479876 -169494264 + (TG)n Simple_repeat Simple_repeat 2 24 0 1580 173 4 7 chrX 7479908 7480180 -169493960 - AluJb SINE Alu -30 282 12 250 274 66 47 chrX 7480982 7481088 -169493052 + MIR SINE MIR 17 124 -138 633 257 102 0 chrX 7481098 7481285 -169492855 + MIR SINE MIR 13 218 -44 2387 88 0 19 chrX 7481285 7481602 -169492538 + AluSx SINE Alu 1 311 -1 975 200 15 25 chrX 7481786 7481986 -169492154 - MER58A DNA MER1_type 0 224 27 195 196 22 22 chrX 7482055 7482101 -169492039 - MIR SINE MIR -6 256 211 321 297 0 0 chrX 7483004 7483078 -169491062 + MIR SINE MIR 24 97 -111 3310 98 20 7 chrX 7483106 7483629 -169490511 + L1MA1 LINE L1 5573 6096 -204 207 288 8 16 chrX 7483822 7483947 -169490193 + (TGGG)n Simple_repeat Simple_repeat 1 124 0 534 250 64 68 chrX 7484495 7484715 -169489425 + L2 LINE L2 3085 3303 -10 1147 238 5 0 chrX 7484801 7485024 -169489116 - MER58A DNA MER1_type 0 224 1 2046 130 0 33 chrX 7485789 7486090 -169488050 + AluJb SINE Alu 1 291 -21 1019 174 36 20 chrX 7487712 7487908 -169486232 - MER58A DNA MER1_type 0 224 26 697 0 22 11 chrX 7488355 7488444 -169485696 + (TTTC)n Simple_repeat Simple_repeat 3 92 0 261 180 0 20 chrX 7488488 7488538 -169485602 - MER58 DNA MER1_type -16 2404 2356 * 764 225 172 45 chrX 7488520 7488681 -169485459 - MER58 DNA MER1_type -2145 275 71 2363 77 0 13 chrX 7488681 7488981 -169485159 + AluSp SINE Alu 1 296 -17 764 225 172 45 chrX 7488981 7489063 -169485077 - MER58 DNA MER1_type -2349 71 1 884 190 0 12 chrX 7489188 7489351 -169484789 - FRAM SINE Alu -4 172 12 28 0 0 0 chrX 7489390 7489418 -169484722 + AT_rich Low_complexity Low_complexity 1 28 0 885 120 0 8 chrX 7489419 7489544 -169484596 - FLAM_C SINE Alu -19 124 1 257 219 49 12 chrX 7489554 7489636 -169484504 + MER117 DNA MER1_type 37 121 -76 1244 224 39 77 chrX 7492440 7492922 -169481218 + LTR37B LTR ERV1 1 464 -4 2429 162 29 43 chrX 7494243 7494755 -169479385 + L1MB8 LINE L1 5674 6178 0 2140 112 0 20 chrX 7494764 7495060 -169479080 + AluJb SINE Alu 1 290 -22 554 213 0 39 chrX 7495230 7495357 -169478783 - L2 LINE L2 0 3313 3192 2258 145 75 6 chrX 7495434 7495885 -169478255 - MER31A LTR ERV1 0 661 1 1790 194 32 24 chrX 7496580 7496956 -169477184 + LTR2B LTR ERV1 112 490 0 2862 80 10 8 chrX 7496956 7497354 -169476786 + Harlequin LTR ERV1 1 399 -6497 744 134 0 52 chrX 7497325 7497459 -169476681 + HERVE LTR ERV1 255 381 -7432 * 300 135 0 39 chrX 7497447 7497499 -169476641 + HERVE LTR ERV1 255 304 -7509 * 6967 66 94 21 chrX 7497500 7498488 -169475652 + HERVE LTR ERV1 282 1341 -5555 1902 56 56 0 chrX 7498478 7498748 -169475392 + HERVE LTR ERV1 1984 2268 -4628 * 582 54 0 0 chrX 7500278 7500352 -169473788 + (GA)n Simple_repeat Simple_repeat 1 74 0 2282 106 0 0 chrX 7500740 7501042 -169473098 + AluSx SINE Alu 1 302 -10 189 0 0 0 chrX 7501826 7501847 -169472293 + (T)n Simple_repeat Simple_repeat 1 21 0 408 191 0 0 chrX 7502499 7502588 -169471552 + G-rich Low_complexity Low_complexity 1 89 0 439 286 0 41 chrX 7502609 7502756 -169471384 + G-rich Low_complexity Low_complexity 6 146 0 203 324 14 7 chrX 7502897 7503039 -169471101 + (TA)n Simple_repeat Simple_repeat 2 144 0 249 33 0 0 chrX 7504115 7504145 -169469995 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chrX 7504930 7504952 -169469188 + (A)n Simple_repeat Simple_repeat 1 22 0 26 64 0 0 chrX 7505255 7505302 -169468838 + AT_rich Low_complexity Low_complexity 1 47 0 401 291 132 35 chrX 7505815 7506155 -169467985 + L3 LINE CR1 1197 1569 -8 2030 140 6 19 chrX 7508042 7508356 -169465784 - AluJb SINE Alu -2 310 1 242 247 68 75 chrX 7508881 7509034 -169465106 + MIR3 SINE MIR 35 184 -24 1891 122 40 4 chrX 7509090 7509368 -169464772 + AluJo SINE Alu 1 288 -24 2129 133 7 0 chrX 7509373 7509666 -169464474 + AluSx SINE Alu 1 295 -17 201 74 0 0 chrX 7510088 7510115 -169464025 + (TTATA)n Simple_repeat Simple_repeat 4 30 0 1142 175 0 0 chrX 7511238 7511421 -169462719 - AluJb SINE Alu -3 309 127 1952 142 42 0 chrX 7511433 7511722 -169462418 + AluSx SINE Alu 1 301 -11 242 374 20 0 chrX 7512279 7512378 -169461762 + L2 LINE L2 3169 3269 -3 210 191 0 0 chrX 7512947 7512989 -169461151 + (TA)n Simple_repeat Simple_repeat 2 43 0 253 198 109 50 chrX 7513793 7513894 -169460246 - MIR SINE MIR -23 239 133 793 11 0 0 chrX 7514173 7514268 -169459872 - L1MA4A LINE L1 -7 6296 6202 189 0 0 0 chrX 7515509 7515530 -169458610 + (TTG)n Simple_repeat Simple_repeat 1 21 0 236 270 0 0 chrX 7517177 7517240 -169456900 + L2 LINE L2 3246 3308 -5 204 229 0 21 chrX 7517243 7517291 -169456849 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 1551 95 40 5 chrX 7517299 7517521 -169456619 - MER30 DNA MER1_type 0 230 1 1886 178 12 3 chrX 7517928 7518260 -169455880 + MER2 DNA MER2_type 2 336 -9 2445 62 0 0 chrX 7519189 7519477 -169454663 + AluY SINE Alu 1 288 -23 1448 216 78 56 chrX 7519482 7519849 -169454291 - MLT1C LTR MaLR 0 467 87 1940 138 20 10 chrX 7519849 7520145 -169453995 + AluJb SINE Alu 1 299 -13 1448 216 78 56 chrX 7520145 7520225 -169453915 - MLT1C LTR MaLR -380 87 10 1364 176 52 94 chrX 7520678 7521059 -169453081 + MSTB LTR MaLR 19 383 -43 347 248 24 24 chrX 7522156 7522281 -169451859 + (TA)n Simple_repeat Simple_repeat 1 125 0 1333 159 136 31 chrX 7523396 7523654 -169450486 + AluJb SINE Alu 10 294 -18 210 338 0 12 chrX 7523731 7523811 -169450329 - L2 LINE L2 -213 3059 2981 492 62 0 0 chrX 7523860 7523924 -169450216 + (TC)n Simple_repeat Simple_repeat 2 65 0 315 0 0 0 chrX 7523943 7523978 -169450162 + (CA)n Simple_repeat Simple_repeat 2 36 0 2359 107 0 3 chrX 7524025 7524335 -169449805 + AluSx SINE Alu 1 309 -3 446 314 29 29 chrX 7525902 7526074 -169448066 - MIR3 SINE MIR -21 187 16 7457 53 10 0 chrX 7527067 7527970 -169446170 - Harlequin LTR ERV1 -2633 4263 3352 28 0 0 0 chrX 7528287 7528315 -169445825 + AT_rich Low_complexity Low_complexity 1 28 0 669 136 39 0 chrX 7528315 7528418 -169445722 - U6 snRNA snRNA 0 107 1 1695 247 106 11 chrX 7528799 7529273 -169444867 + LTR40a LTR ERVL 1 519 0 23 54 0 0 chrX 7531507 7531544 -169442596 + AT_rich Low_complexity Low_complexity 1 37 0 2562 66 0 0 chrX 7531811 7532116 -169442024 - AluY SINE Alu -6 305 1 928 233 26 37 chrX 7532118 7532466 -169441674 - L1M4 LINE L1 -1449 4697 4354 39 38 0 0 chrX 7532820 7532873 -169441267 + AT_rich Low_complexity Low_complexity 1 53 0 1027 197 0 0 chrX 7532873 7533051 -169441089 - AluJ SINE Alu -10 302 125 405 118 47 24 chrX 7533051 7533178 -169440962 + (TA)n Simple_repeat Simple_repeat 2 131 0 960 107 0 0 chrX 7533179 7533301 -169440839 - AluJ SINE Alu -190 122 1 1040 178 53 14 chrX 7533578 7533786 -169440354 - MLT1A1 LTR MaLR -149 216 1 991 251 66 11 chrX 7533862 7534149 -169439991 + LTR16A1 LTR ERVL 155 457 0 2449 80 0 3 chrX 7534237 7534549 -169439591 + AluY SINE Alu 1 311 0 447 136 0 12 chrX 7535542 7535623 -169438517 - L1MA5 LINE L1 0 6300 6221 28 71 0 0 chrX 7535655 7535711 -169438429 + AT_rich Low_complexity Low_complexity 1 56 0 361 294 33 50 chrX 7535972 7536152 -169437988 + MIR SINE MIR 78 254 -8 4841 122 11 7 chrX 7538329 7539068 -169435072 + L1PA16 LINE L1 5424 6165 -1 201 274 16 16 chrX 7539238 7539300 -169434840 - MIR SINE MIR -115 147 86 1541 95 5 5 chrX 7539643 7539843 -169434297 - AluSc SINE Alu -109 200 1 779 192 110 11 chrX 7540013 7540195 -169433945 + L1ME2 LINE L1 5963 6162 -2 278 0 54 0 chrX 7541091 7541128 -169433012 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 183 345 58 6 chrX 7541141 7541312 -169432828 - MIR SINE MIR -36 226 47 2456 139 71 73 chrX 7543272 7543762 -169430378 - LTR2B LTR ERV1 -1 489 1 599 238 41 12 chrX 7543902 7544074 -169430066 - MER33 DNA MER1_type -138 186 10 1004 237 19 14 chrX 7544081 7544296 -169429844 - MER58A DNA MER1_type 0 224 9 442 175 183 5 chrX 7544565 7544687 -169429453 + MIR SINE MIR 4 144 -64 22 56 0 0 chrX 7545808 7545844 -169428296 + AT_rich Low_complexity Low_complexity 1 36 0 1867 125 125 3 chrX 7546888 7547208 -169426932 + MER46B DNA MER2_type 3 236 0 1493 189 0 34 chrX 7547235 7547532 -169426608 + AluJo SINE Alu 1 287 -25 1983 133 0 10 chrX 7547660 7547962 -169426178 - AluSx SINE Alu -13 299 1 291 188 16 16 chrX 7548388 7548452 -169425688 - MER20 DNA MER1_type -155 64 1 1629 135 58 8 chrX 7548707 7548998 -169425142 + AluJo SINE Alu 12 315 0 29 70 0 0 chrX 7549327 7549384 -169424756 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chrX 7549519 7549555 -169424585 + AT_rich Low_complexity Low_complexity 1 36 0 464 310 61 31 chrX 7550933 7551162 -169422978 - MIR SINE MIR -1 261 26 311 333 75 11 chrX 7551821 7551995 -169422145 + MIR SINE MIR 13 197 -65 1570 249 40 18 chrX 7552032 7552481 -169421659 + L1ME1 LINE L1 5703 6161 -5 218 31 0 31 chrX 7553159 7553191 -169420949 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 393 262 60 30 chrX 7554055 7554254 -169419886 - L1ME2 LINE L1 0 6166 5968 182 328 107 16 chrX 7555390 7555512 -169418628 - MIR3 SINE MIR -63 145 13 283 222 0 0 chrX 7555779 7555833 -169418307 - MER94 DNA DNA -79 55 2 698 0 12 0 chrX 7556079 7556161 -169417979 + (CA)n Simple_repeat Simple_repeat 2 84 0 478 250 22 15 chrX 7557408 7557544 -169416596 + MIR SINE MIR 16 152 -110 180 0 0 0 chrX 7558084 7558104 -169416036 + (A)n Simple_repeat Simple_repeat 1 20 0 1476 160 98 49 chrX 7560112 7560437 -169413703 + MER58B DNA MER1_type 1 341 0 214 351 18 12 chrX 7560596 7560767 -169413373 + CT-rich Low_complexity Low_complexity 1 172 0 207 194 0 0 chrX 7561094 7561130 -169413010 + (CATA)n Simple_repeat Simple_repeat 4 39 0 25 0 0 0 chrX 7561130 7561155 -169412985 + AT_rich Low_complexity Low_complexity 1 25 0 1887 97 41 4 chrX 7561634 7561903 -169412237 - L1PA8 LINE L1 0 6172 5894 409 295 5 58 chrX 7561952 7562142 -169411998 + CT-rich Low_complexity Low_complexity 1 180 0 2456 161 12 5 chrX 7562748 7563152 -169410988 - L1MA6 LINE L1 0 6300 5894 1531 140 8 51 chrX 7563164 7563503 -169410637 - L1MA5 LINE L1 -321 5970 5655 547 273 107 19 chrX 7563519 7563724 -169410416 + MIR SINE MIR 36 258 -4 443 209 189 53 chrX 7565720 7566021 -169408119 - L1ME4a LINE L1 -46 6075 5734 432 272 20 27 chrX 7566417 7566564 -169407576 + MER5A DNA MER1_type 44 189 0 1038 239 36 30 chrX 7566936 7567270 -169406870 - L1 LINE L1 -2452 3694 3359 1091 162 66 5 chrX 7567540 7567738 -169406402 - L1MD3 LINE L1 -137 7858 7649 189 0 0 0 chrX 7568646 7568667 -169405473 + (TTA)n Simple_repeat Simple_repeat 2 22 0 214 208 62 0 chrX 7570802 7570850 -169403290 - L2 LINE L2 -96 3217 3167 482 154 7 26 chrX 7571298 7571370 -169402770 - MSTB2 LTR MaLR 0 457 385 1777 165 17 7 chrX 7571370 7571661 -169402479 + AluJb SINE Alu 2 295 -17 482 154 7 26 chrX 7571661 7571704 -169402436 - MSTB2 LTR MaLR -72 385 287 183 80 0 0 chrX 7572659 7572684 -169401456 + (TA)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chrX 7573004 7573033 -169401107 + (T)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chrX 7573137 7573161 -169400979 + (CA)n Simple_repeat Simple_repeat 2 25 0 7225 80 21 14 chrX 7573723 7574733 -169399407 + Harlequin LTR ERV1 4478 5494 -1402 198 300 218 0 chrX 7574928 7575098 -169399042 - L3 LINE CR1 -126 1451 1245 594 284 53 5 chrX 7575175 7575365 -169398775 - MIR SINE MIR -17 245 47 1815 220 27 34 chrX 7575858 7576392 -169397748 + L1MB8 LINE L1 5466 5990 -194 201 354 0 13 chrX 7576510 7576589 -169397551 + L2 LINE L2 3191 3268 -4 534 264 42 0 chrX 7576938 7577105 -169397035 + MER104 DNA Tc2 7 180 0 421 304 15 0 chrX 7577961 7578096 -169396044 + L1 LINE L1 3745 3881 -2265 1603 283 29 7 chrX 7578126 7578688 -169395452 - L1M4 LINE L1 -1098 5048 4475 1419 216 47 13 chrX 7578687 7579071 -169395069 + L1 LINE L1 3564 3960 -2186 * 3569 142 48 15 chrX 7581071 7581721 -169392419 - L1MB2 LINE L1 -2 6169 5499 3009 166 49 19 chrX 7583797 7584368 -169389772 + L1MD2 LINE L1 5428 6015 -344 237 242 8 17 chrX 7584513 7584633 -169389507 + G-rich Low_complexity Low_complexity 4 122 0 300 188 0 0 chrX 7584772 7584841 -169389299 + G-rich Low_complexity Low_complexity 1 69 0 299 168 37 22 chrX 7585502 7585584 -169388556 + MER53 DNA DNA 1 116 -73 332 262 85 38 chrX 7586188 7586344 -169387796 + MIR SINE MIR 21 192 -69 670 269 144 30 chrX 7586499 7586860 -169387280 + LTR16C LTR ERVL 80 481 -10 594 96 0 21 chrX 7587058 7587152 -169386988 - MER49 LTR ERV1 -831 92 1 237 330 103 49 chrX 7589987 7590172 -169383968 + L2 LINE L2 2985 3179 -93 222 208 0 0 chrX 7590537 7590585 -169383555 + CT-rich Low_complexity Low_complexity 3 50 0 443 228 16 65 chrX 7591979 7592163 -169381977 + CT-rich Low_complexity Low_complexity 2 176 0 6004 186 33 6 chrX 7592298 7593464 -169380676 + L1P LINE L1 1403 2600 -3546 1342 196 48 102 chrX 7593617 7594055 -169380085 - MLT1E1 LTR MaLR -165 489 17 365 45 0 0 chrX 7594124 7594168 -169379972 + (TG)n Simple_repeat Simple_repeat 1 44 0 234 0 0 0 chrX 7594174 7594200 -169379940 + (TA)n Simple_repeat Simple_repeat 1 26 0 222 186 31 41 chrX 7594230 7594327 -169379813 + (TTAAA)n Simple_repeat Simple_repeat 3 98 0 * 329 215 23 35 chrX 7594293 7594465 -169379675 + (TTTA)n Simple_repeat Simple_repeat 3 172 0 252 260 35 0 chrX 7594382 7594555 -169379585 + (TTA)n Simple_repeat Simple_repeat 1 179 0 * 22 0 0 0 chrX 7594555 7594577 -169379563 + AT_rich Low_complexity Low_complexity 1 22 0 185 141 64 0 chrX 7594577 7594655 -169379485 + (TA)n Simple_repeat Simple_repeat 1 83 0 70 13 0 0 chrX 7594660 7594737 -169379403 + AT_rich Low_complexity Low_complexity 1 77 0 1256 199 0 30 chrX 7595292 7595558 -169378582 - AluJo SINE Alu -17 295 38 198 341 81 24 chrX 7596470 7596593 -169377547 - L2 LINE L2 -617 2697 2568 281 361 133 0 chrX 7596612 7596770 -169377370 + MIR3 SINE MIR 7 185 -23 508 256 125 47 chrX 7597579 7597847 -169376293 - MLT1K LTR MaLR -8 589 323 33 0 0 0 chrX 7598719 7598752 -169375388 + AT_rich Low_complexity Low_complexity 1 33 0 217 330 33 0 chrX 7598835 7598926 -169375214 - MER5B DNA MER1_type -1 177 84 896 268 98 0 chrX 7599027 7599303 -169374837 + MLT1I LTR MaLR 101 403 -6 193 238 0 48 chrX 7599309 7599351 -169374789 - MER5B DNA MER1_type -135 43 4 8048 29 1 4 chrX 7599534 7600947 -169373193 + L1PA4 LINE L1 4744 6153 -2 983 224 35 39 chrX 7601920 7602206 -169371934 + L1MA9 LINE L1 5990 6274 -38 3604 106 10 4 chrX 7603045 7603556 -169370584 - L1MA4 LINE L1 -10 6290 5777 2282 107 3 0 chrX 7603575 7603874 -169370266 - AluSx SINE Alu -11 301 2 197 370 55 24 chrX 7606128 7606255 -169367885 + L2 LINE L2 3127 3257 -15 202 274 0 41 chrX 7607189 7607262 -169366878 + GA-rich Low_complexity Low_complexity 4 73 0 1206 156 18 58 chrX 7607819 7608044 -169366096 + MER20 DNA MER1_type 1 216 -3 251 311 76 17 chrX 7608722 7608841 -169365299 + L2 LINE L2 3143 3268 -4 859 221 156 58 chrX 7608893 7609342 -169364798 + MLT1E LTR MaLR 1 493 -100 378 289 94 13 chrX 7609809 7609968 -169364172 - MIR3 SINE MIR -6 202 31 1917 169 14 0 chrX 7611426 7611722 -169362418 - AluJo SINE Alu -12 300 1 878 140 11 182 chrX 7611898 7612162 -169361978 - MER20 DNA MER1_type 0 219 1 1081 194 58 82 chrX 7612314 7612741 -169361399 + LTR37B LTR ERV1 45 461 -7 850 288 21 13 chrX 7612773 7613148 -169360992 - L1ME3A LINE L1 -288 5882 5505 425 283 88 19 chrX 7613193 7613416 -169360724 - L1ME3A LINE L1 -733 5429 5195 3941 265 84 32 chrX 7613487 7615605 -169358535 - L1MEc LINE L1 -3943 2272 77 232 262 0 56 chrX 7615716 7615823 -169358317 - L1ME3A LINE L1 -960 5186 5086 603 288 109 8 chrX 7616258 7616733 -169357407 - L1ME3A LINE L1 -1088 5058 4536 2194 199 128 0 chrX 7616736 7617234 -169356906 + MLT1F1 LTR MaLR 2 563 -4 551 275 185 16 chrX 7617234 7617855 -169356285 - L1ME3A LINE L1 -1609 4537 3812 2435 123 17 38 chrX 7618067 7618489 -169355651 + L1MC1 LINE L1 5916 6328 -5 182 326 0 0 chrX 7619029 7619075 -169355065 - L2 LINE L2 -18 3254 3209 947 55 16 0 chrX 7619394 7619521 -169354619 + L1PA4 LINE L1 6027 6155 0 794 167 0 0 chrX 7619531 7619651 -169354489 + FLAM_A SINE Alu 1 120 -13 29 28 0 0 chrX 7619651 7619687 -169354453 + AT_rich Low_complexity Low_complexity 1 36 0 314 277 113 19 chrX 7620593 7620752 -169353388 - MLT1K LTR MaLR -13 575 402 1960 118 83 3 chrX 7620770 7621109 -169353031 - LTR42 LTR ERVL 0 495 130 889 26 70 0 chrX 7621214 7621328 -169352812 - L1PA5 LINE L1 0 6154 6033 714 21 0 199 chrX 7621328 7621469 -169352671 + L1PA5 LINE L1 5851 5963 -191 903 113 75 0 chrX 7621469 7621628 -169352512 - LTR42 LTR ERVL -324 171 1 2306 133 24 87 chrX 7621631 7622126 -169352014 - MER31B LTR ERV1 0 466 3 241 326 34 0 chrX 7622216 7622305 -169351835 - MLT1K LTR MaLR -338 250 159 266 245 233 31 chrX 7623229 7623388 -169350752 + MIR3 SINE MIR 18 208 0 324 305 144 11 chrX 7623531 7623718 -169350422 - MIR SINE MIR -50 212 1 215 56 56 0 chrX 7624670 7624706 -169349434 + A-rich Low_complexity Low_complexity 2 39 0 1827 169 4 0 chrX 7624794 7625073 -169349067 - AluJb SINE Alu -32 280 1 336 274 39 10 chrX 7625271 7625373 -169348767 + MIR SINE MIR 88 192 -70 2094 129 0 10 chrX 7625374 7625677 -169348463 + AluSx SINE Alu 4 303 -9 1898 154 54 153 chrX 7626189 7626746 -169347394 + MLT1D LTR MaLR 4 505 0 770 148 12 24 chrX 7627174 7627343 -169346797 + GA-rich Low_complexity Low_complexity 3 169 0 189 195 0 0 chrX 7627913 7627954 -169346186 + CT-rich Low_complexity Low_complexity 3 43 0 680 301 27 34 chrX 7628373 7628635 -169345505 + MIR SINE MIR 3 262 0 25 0 0 0 chrX 7629517 7629542 -169344598 + AT_rich Low_complexity Low_complexity 1 25 0 641 208 14 0 chrX 7630839 7630983 -169343157 - Tigger6a DNA MER2_type 0 1083 938 3917 139 15 71 chrX 7630983 7631467 -169342673 + L1PB4 LINE L1 4824 5334 -822 2161 104 3 3 chrX 7631467 7631764 -169342376 + AluSg SINE Alu 1 297 -13 3917 139 15 71 chrX 7631764 7632240 -169341900 + L1PB4 LINE L1 5334 5700 -456 12410 30 1 3 chrX 7632240 7634505 -169339635 + L1PA4 LINE L1 3875 6155 0 3917 139 15 71 chrX 7634505 7634823 -169339317 + L1PB4 LINE L1 5700 6034 -122 5724 110 16 2 chrX 7634831 7636371 -169337769 - L1PA14 LINE L1 -9 6152 4586 2335 78 0 0 chrX 7636371 7636692 -169337448 + AluY SINE Alu 1 321 0 5724 110 16 2 chrX 7636692 7636968 -169337172 - L1PA14 LINE L1 -1575 4586 4315 692 168 32 0 chrX 7636968 7637091 -169337049 + L1PB4 LINE L1 6022 6150 -6 2919 193 96 10 chrX 7637098 7637777 -169336363 - Tigger6a DNA MER2_type -130 953 217 33 66 0 0 chrX 7638039 7638100 -169336040 + AT_rich Low_complexity Low_complexity 1 61 0 3331 119 47 4 chrX 7638244 7638782 -169335358 + MER34B LTR ERV1 3 563 -2 260 286 60 91 chrX 7638931 7639130 -169335010 + L2 LINE L2 3030 3222 -50 391 309 15 15 chrX 7639147 7639283 -169334857 - MIR SINE MIR -4 258 123 2308 113 0 3 chrX 7639508 7639809 -169334331 + AluSx SINE Alu 1 300 -12 267 312 26 0 chrX 7640113 7640190 -169333950 - LTR67 LTR ERVL -363 194 116 212 0 36 0 chrX 7640406 7640434 -169333706 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 643 279 73 21 chrX 7641414 7641647 -169332493 - MIR SINE MIR -10 252 8 273 247 0 49 chrX 7642583 7642664 -169331476 - MLT1K LTR MaLR -329 259 183 253 200 215 0 chrX 7642705 7642770 -169331370 - L2 LINE L2 0 3313 3235 2030 123 112 29 chrX 7642967 7643350 -169330790 - MSTA LTR MaLR -7 421 7 335 294 67 73 chrX 7644076 7644341 -169329799 - HsTC2 DNA Tc2 -249 1649 1209 1028 118 10 98 chrX 7644341 7644468 -169329672 - MER5A DNA MER1_type -3 186 82 2143 118 14 0 chrX 7644468 7644764 -169329376 + AluSx SINE Alu 1 300 -12 1028 118 10 98 chrX 7644764 7644839 -169329301 - MER5A DNA MER1_type -107 82 2 335 294 67 73 chrX 7644839 7644917 -169329223 - HsTC2 DNA Tc2 -689 1209 1132 245 315 0 0 chrX 7645183 7645272 -169328868 - HsTC2 DNA Tc2 -1031 867 779 1375 137 12 4 chrX 7645278 7645519 -169328621 - L1MB3 LINE L1 -2 6181 5939 278 303 285 18 chrX 7646634 7646799 -169327341 - MIR SINE MIR -3 259 51 193 245 20 0 chrX 7646813 7646862 -169327278 - L2 LINE L2 0 3313 3264 291 364 9 9 chrX 7646995 7647105 -169327035 - MIR SINE MIR -148 114 5 2093 143 10 56 chrX 7647114 7647506 -169326634 + MLT1A2 LTR MaLR 1 374 0 2254 156 54 12 chrX 7647525 7647990 -169326150 + L1MB7 LINE L1 5682 6164 -20 344 267 17 25 chrX 7648004 7648124 -169326016 + MIR SINE MIR 135 253 -9 523 212 126 81 chrX 7650782 7650980 -169323160 - MIR SINE MIR -3 259 53 201 121 0 0 chrX 7651273 7651306 -169322834 + (TC)n Simple_repeat Simple_repeat 2 34 0 901 221 74 125 chrX 7651497 7652049 -169322091 + MLT1H1 LTR MaLR 32 555 0 311 262 107 8 chrX 7652607 7652729 -169321411 - L2 LINE L2 -14 3299 3166 31 0 0 0 chrX 7652931 7652962 -169321178 + AT_rich Low_complexity Low_complexity 1 31 0 285 54 0 0 chrX 7653056 7653093 -169321047 + tRNA-Val-GTG tRNA tRNA 1 37 -39 486 329 47 22 chrX 7653427 7653746 -169320394 + LTR16C LTR ERVL 149 475 -16 1292 183 179 63 chrX 7654020 7654335 -169319805 + L1MD2 LINE L1 5814 6204 -155 432 0 0 0 chrX 7654335 7654383 -169319757 + (CA)n Simple_repeat Simple_repeat 2 49 0 1292 183 179 63 chrX 7654383 7654543 -169319597 + L1MD2 LINE L1 6204 6344 -15 281 206 165 10 chrX 7655490 7655587 -169318553 - L2 LINE L2 0 3313 3202 439 211 99 37 chrX 7656054 7656212 -169317928 - LTR33A LTR ERVL -339 184 17 2237 121 44 22 chrX 7656212 7656624 -169317516 + MSTB LTR MaLR 1 421 -5 294 253 95 0 chrX 7656642 7656737 -169317403 - LTR33A LTR ERVL -151 372 269 397 306 120 24 chrX 7657456 7657665 -169316475 + MIR SINE MIR 28 256 -6 317 280 44 26 chrX 7657809 7657936 -169316204 + MER5A DNA MER1_type 10 148 -40 378 192 13 46 chrX 7659140 7659291 -169314849 + GA-rich Low_complexity Low_complexity 3 148 0 1211 213 47 52 chrX 7659295 7659600 -169314540 + MLT2B2 LTR ERVL 175 480 -35 345 47 0 0 chrX 7659600 7659643 -169314497 + (CA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chrX 7659642 7659676 -169314464 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 1211 213 47 52 chrX 7659643 7659713 -169314427 + MLT2B2 LTR ERVL 480 515 0 1954 154 113 10 chrX 7659714 7660104 -169314036 + MLT1D LTR MaLR 76 505 0 1560 146 15 116 chrX 7660619 7660947 -169313193 - AluJb SINE Alu -17 295 1 1931 250 68 46 chrX 7661109 7661756 -169312384 - MER21B LTR ERV1 -105 758 98 2224 64 3 3 chrX 7662651 7662934 -169311206 - L1PB1 LINE L1 -7 6144 5862 349 262 64 40 chrX 7663435 7663637 -169310503 + ERVL LTR ERVL 2243 2449 -3315 544 235 87 37 chrX 7663849 7664036 -169310104 - L1M2 LINE L1 -4221 1995 1608 306 206 137 14 chrX 7664182 7664328 -169309812 - MER113 DNA MER1_type? -354 167 4 1852 177 0 16 chrX 7664345 7664662 -169309478 + AluJb SINE Alu 1 312 0 349 302 94 6 chrX 7664754 7664913 -169309227 - MIR3 SINE MIR -7 201 29 935 139 0 26 chrX 7665036 7665187 -169308953 - MER6B DNA MER2_type -63 147 1 293 265 77 61 chrX 7667269 7667450 -169306690 - HAL1 LINE L1 -5 2502 2319 2542 222 42 29 chrX 7668109 7668727 -169305413 - MLT1E2 LTR MaLR 0 626 1 201 289 31 72 chrX 7668767 7668864 -169305276 - L2 LINE L2 -603 2711 2619 1574 205 15 82 chrX 7669858 7670249 -169303891 - MLT1A1 LTR MaLR 0 365 1 2274 93 0 17 chrX 7670398 7670700 -169303440 - AluSx SINE Alu -15 297 1 2010 176 113 0 chrX 7671132 7671512 -169302628 + MSTB LTR MaLR 1 423 -3 205 316 18 0 chrX 7671983 7672040 -169302100 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 1557 133 0 0 chrX 7672993 7673211 -169300929 + AluSg/x SINE Alu 83 300 -12 1088 250 106 66 chrX 7673413 7673631 -169300509 - MLT1H1 LTR MaLR 0 555 347 2313 110 0 3 chrX 7673631 7673931 -169300209 + AluSx SINE Alu 11 309 -3 1088 250 106 66 chrX 7673931 7674255 -169299885 - MLT1H1 LTR MaLR -208 347 17 1058 249 198 8 chrX 7674564 7674942 -169299198 - MLT1J2 LTR MaLR 0 450 1 324 0 0 0 chrX 7675294 7675330 -169298810 + (TG)n Simple_repeat Simple_repeat 1 36 0 582 285 75 69 chrX 7675815 7676148 -169297992 - MLT1I LTR MaLR -4 405 71 474 65 0 0 chrX 7676273 7676335 -169297805 + (TG)n Simple_repeat Simple_repeat 2 63 0 3021 116 11 0 chrX 7677774 7678215 -169295925 - L1P LINE L1 -1771 4375 3930 1797 84 0 0 chrX 7678215 7678449 -169295691 + L1PA10 LINE L1 5919 6156 -12 425 303 161 19 chrX 7679761 7680022 -169294118 - LTR16A LTR ERVL -8 442 145 409 260 133 46 chrX 7680224 7680420 -169293720 + MLT1K LTR MaLR 216 428 -160 319 311 67 20 chrX 7680692 7680971 -169293169 + LTR16C LTR ERVL 175 491 0 299 288 25 0 chrX 7680971 7681046 -169293094 + MLT1K LTR MaLR 440 516 -72 243 174 0 0 chrX 7681373 7681427 -169292713 - L1M4 LINE L1 -3871 2511 2458 353 231 0 0 chrX 7683028 7683093 -169291047 + MER58 DNA MER1_type 1 65 -321 599 207 9 0 chrX 7683560 7683671 -169290469 + MER58 DNA MER1_type 2309 2420 0 289 183 24 49 chrX 7684118 7684200 -169289940 - MER20 DNA MER1_type -52 167 88 * 1877 206 17 49 chrX 7684186 7684658 -169289482 + MLT1C LTR MaLR 11 467 0 749 136 27 0 chrX 7684658 7684768 -169289372 - MER20 DNA MER1_type -106 113 1 509 310 41 29 chrX 7685298 7685543 -169288597 + MIR SINE MIR 15 262 0 2187 175 66 84 chrX 7686042 7686172 -169287968 - MLT1D LTR MaLR 0 505 374 18653 27 8 0 chrX 7686172 7689106 -169285034 + L1PA4 LINE L1 3206 6152 -3 2187 175 66 84 chrX 7689106 7689489 -169284651 - MLT1D LTR MaLR -131 374 1 833 218 122 48 chrX 7689863 7690134 -169284006 + LTR16C LTR ERVL 201 491 0 665 227 101 45 chrX 7690596 7690794 -169283346 + MER63A DNA MER1_type 1 209 -1 1360 209 118 34 chrX 7690832 7691239 -169282901 - MLT1J1 LTR MaLR -5 441 1 520 267 8 8 chrX 7691304 7691435 -169282705 - MIR SINE MIR -112 150 20 2220 159 109 17 chrX 7691848 7692314 -169281826 - MER34 LTR ERV1 -33 509 1 812 246 11 0 chrX 7694503 7694690 -169279450 - MER5A DNA MER1_type 0 189 1 467 240 55 9 chrX 7694826 7694986 -169279154 + MER5B DNA MER1_type 1 179 -10 1015 173 8 130 chrX 7695374 7695628 -169278512 - MER58A DNA MER1_type 0 224 2 723 146 184 13 chrX 7696158 7696316 -169277824 + MER20 DNA MER1_type 29 213 -6 232 316 10 41 chrX 7696602 7696700 -169277440 - MER5A DNA MER1_type -85 104 10 1926 141 13 20 chrX 7696954 7697253 -169276887 - AluJo SINE Alu -15 297 1 352 306 25 50 chrX 7698731 7698930 -169275210 - MIR SINE MIR -21 241 48 2311 121 0 3 chrX 7699001 7699314 -169274826 + AluSx SINE Alu 1 312 0 587 238 331 58 chrX 7699373 7699594 -169274546 + L2 LINE L2 2199 2359 -954 2135 139 21 3 chrX 7699594 7699932 -169274208 - MER2 DNA MER2_type 0 344 1 587 238 331 58 chrX 7699932 7700000 -169274140 + L2 LINE L2 2359 2407 -906 2362 88 0 7 chrX 7700000 7700296 -169273844 - AluSx SINE Alu -17 295 2 587 238 331 58 chrX 7700296 7700640 -169273500 + L2 LINE L2 2407 3005 -308 330 256 169 79 chrX 7703481 7703836 -169270304 + MLT1J LTR MaLR 125 511 0 592 257 94 18 chrX 7705401 7705749 -169268391 + MLT1J2 LTR MaLR 24 427 -23 270 360 54 9 chrX 7706050 7706161 -169267979 + MER91C DNA MER1_type 25 140 0 815 279 131 48 chrX 7706845 7707256 -169266884 + L1MC4 LINE L1 7082 7572 -470 319 137 0 0 chrX 7707256 7707307 -169266833 + L1PA16 LINE L1 6107 6157 -9 815 279 131 48 chrX 7707307 7707417 -169266723 + L1MC4 LINE L1 7572 7671 -371 3565 129 24 18 chrX 7707530 7708127 -169266013 + L1MC2 LINE L1 5707 6306 -38 1086 176 0 5 chrX 7708607 7708817 -169265323 + L1MB7 LINE L1 5183 5391 -755 917 125 0 7 chrX 7708811 7708936 -169265204 + L1MA2 LINE L1 6143 6268 -36 * 4339 28 0 0 chrX 7708936 7709433 -169264707 + L1PA5 LINE L1 5646 6145 -9 347 121 0 0 chrX 7709453 7709511 -169264629 + L1MA1 LINE L1 6245 6302 0 1176 154 18 32 chrX 7709756 7709976 -169264164 - MER20 DNA MER1_type 0 219 3 206 295 45 62 chrX 7710478 7710590 -169263550 + MIR SINE MIR 36 145 -63 1755 101 57 10 chrX 7710590 7710887 -169263253 + L1MA3 LINE L1 5995 6305 0 2113 167 53 7 chrX 7710903 7711316 -169262824 + L1MB7 LINE L1 5725 6156 -28 * 9368 123 8 14 chrX 7711301 7712773 -169261367 - L1P LINE L1 -2023 4123 2661 6678 77 14 8 chrX 7712773 7714230 -169259910 + L1PA10 LINE L1 4666 6150 -18 180 0 0 0 chrX 7714230 7714250 -169259890 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 468 35 0 0 chrX 7714485 7714543 -169259597 + (CA)n Simple_repeat Simple_repeat 2 59 0 833 178 10 56 chrX 7715666 7715863 -169258277 + MER5A DNA MER1_type 1 188 -1 1145 175 38 0 chrX 7716136 7716347 -169257793 - MER20 DNA MER1_type 0 219 1 1470 158 60 32 chrX 7717177 7717461 -169256679 - AluJo SINE Alu -20 292 1 295 299 13 0 chrX 7719775 7719852 -169254288 + L2 LINE L2 3188 3265 -7 254 295 71 18 chrX 7720269 7720381 -169253759 + L2 LINE L2 3196 3313 0 264 226 139 29 chrX 7720519 7720656 -169253484 + L1ME4a LINE L1 5968 6119 -2 2150 119 10 0 chrX 7720794 7721089 -169253051 + AluSx SINE Alu 1 298 -14 1100 191 10 24 chrX 7721292 7721501 -169252639 + MER20 DNA MER1_type 1 206 -13 1106 123 0 0 chrX 7721569 7721724 -169252416 + FRAM SINE Alu 1 152 -24 198 0 0 0 chrX 7721917 7721939 -169252201 + (TA)n Simple_repeat Simple_repeat 1 22 0 656 75 0 0 chrX 7722138 7722218 -169251922 - MADE1 DNA Mariner 0 80 1 226 318 19 28 chrX 7722229 7722336 -169251804 - L3b LINE CR1 -368 1215 1110 386 304 158 0 chrX 7724500 7724658 -169249482 + MER5A DNA MER1_type 7 189 0 2339 135 14 3 chrX 7725613 7725975 -169248165 + MER47A DNA MER2_type 1 366 0 366 217 24 12 chrX 7726004 7726087 -169248053 + MLT1I LTR MaLR 318 401 -8 2354 115 0 0 chrX 7727541 7727853 -169246287 - AluSx SINE Alu 0 312 1 27 0 0 0 chrX 7727853 7727880 -169246260 + AT_rich Low_complexity Low_complexity 1 27 0 2168 121 27 0 chrX 7727889 7728186 -169245954 + AluJb SINE Alu 1 305 -7 636 197 8 0 chrX 7728195 7728312 -169245828 + FLAM_C SINE Alu 1 118 -15 35 0 0 0 chrX 7728312 7728347 -169245793 + AT_rich Low_complexity Low_complexity 1 35 0 540 217 112 28 chrX 7728383 7728526 -169245614 + L1ME3A LINE L1 6007 6161 -9 2572 153 42 0 chrX 7728548 7728998 -169245142 + L1MB5 LINE L1 5706 6174 0 1494 179 4 12 chrX 7729179 7729436 -169244704 + AluJo SINE Alu 6 260 -52 379 142 85 0 chrX 7729444 7729550 -169244590 + GA-rich Low_complexity Low_complexity 3 117 0 314 271 115 8 chrX 7729727 7729849 -169244291 + L2 LINE L2 3128 3262 -10 443 270 75 35 chrX 7729950 7730150 -169243990 + MIR SINE MIR 49 256 -6 1552 204 8 66 chrX 7731117 7731479 -169242661 + MER58B DNA MER1_type 1 341 0 2303 115 0 3 chrX 7731616 7731929 -169242211 + AluSx SINE Alu 1 312 0 2102 129 0 35 chrX 7732918 7733229 -169240911 + AluJb SINE Alu 1 300 -12 3026 131 24 24 chrX 7733230 7733336 -169240804 + MER34 LTR ERV1 13 118 -424 2450 87 0 0 chrX 7733336 7733645 -169240495 - AluY SINE Alu -2 309 1 3026 131 24 24 chrX 7733645 7734042 -169240098 + MER34 LTR ERV1 117 516 -26 724 179 8 134 chrX 7734083 7734329 -169239811 + MER58C DNA MER1_type 1 215 0 732 209 35 0 chrX 7735015 7735187 -169238953 - MER5B DNA MER1_type 0 178 1 2033 128 3 17 chrX 7736168 7736346 -169237794 - AluJo SINE Alu 0 312 138 2239 120 3 0 chrX 7736346 7736645 -169237495 - AluSx SINE Alu -12 300 1 2033 128 3 17 chrX 7736645 7736762 -169237378 - AluJo SINE Alu -174 138 21 1071 172 0 0 chrX 7736847 7737010 -169237130 - FRAM SINE Alu -13 163 1 2040 157 7 0 chrX 7737848 7738153 -169235987 + AluJb SINE Alu 1 307 -5 1441 124 29 5 chrX 7738520 7738729 -169235411 + AluJo SINE Alu 7 220 -92 255 184 0 20 chrX 7738729 7738778 -169235362 + FLAM SINE Alu 86 133 0 1923 116 59 33 chrX 7738786 7739089 -169235051 + AluSx SINE Alu 1 311 -1 768 206 65 0 chrX 7740526 7740710 -169233430 + MIR SINE MIR 33 228 -34 575 183 80 51 chrX 7741378 7741553 -169232587 + MER5A DNA MER1_type 9 188 -1 3947 153 48 7 chrX 7742637 7743362 -169230778 + L1MB7 LINE L1 5429 6183 -1 499 264 88 23 chrX 7744255 7744471 -169229669 - MER46C DNA MER2_type -107 231 2 242 267 212 0 chrX 7744783 7744929 -169229211 + L2 LINE L2 1589 1765 -1549 1214 206 5 0 chrX 7745007 7745225 -169228915 + MER58A DNA MER1_type 4 222 -2 398 300 57 4 chrX 7745232 7745462 -169228678 + L2 LINE L2 1953 2194 -1120 258 245 132 9 chrX 7745573 7745679 -169228461 - MER117 DNA MER1_type -40 157 39 * 262 299 90 0 chrX 7745650 7745784 -169228356 - MER117 DNA MER1_type -47 150 5 329 307 132 19 chrX 7745929 7746481 -169227659 + L2 LINE L2 2485 3085 -187 252 0 0 0 chrX 7746564 7746592 -169227548 + (TG)n Simple_repeat Simple_repeat 2 29 0 244 297 36 36 chrX 7746690 7746801 -169227339 + L2 LINE L2 3203 3313 0 354 291 21 43 chrX 7746825 7746966 -169227174 - L2 LINE L2 0 3313 3176 1276 181 115 44 chrX 7746997 7747267 -169226873 + AluJo SINE Alu 1 289 -23 2174 165 3 0 chrX 7747268 7747626 -169226514 + L1MB8 LINE L1 5627 5985 -193 757 145 26 62 chrX 7748580 7748773 -169225367 - MER33 DNA MER1_type -8 355 170 613 181 10 1 chrX 7748756 7748865 -169225275 - MER33 DNA MER1_type -250 74 1 * 211 250 0 0 chrX 7748969 7749017 -169225123 + L2 LINE L2 3247 3294 -19 204 286 0 18 chrX 7749908 7749964 -169224176 + GA-rich Low_complexity Low_complexity 3 57 0 705 256 154 28 chrX 7750469 7750793 -169223347 + LTR16C LTR ERVL 112 476 -15 218 118 0 0 chrX 7751976 7752010 -169222130 - L2 LINE L2 -12 3301 3268 1160 178 41 18 chrX 7752128 7752347 -169221793 + MER58A DNA MER1_type 1 224 0 283 259 12 0 chrX 7752644 7752725 -169221415 - MIR SINE MIR -11 251 170 452 198 9 28 chrX 7752730 7752836 -169221304 - MER20 DNA MER1_type 0 219 116 334 305 19 32 chrX 7752839 7752993 -169221147 - MIR SINE MIR -98 164 13 210 260 52 26 chrX 7754548 7754625 -169219515 + MER91C DNA MER1_type 37 115 -25 1930 81 0 0 chrX 7755832 7756067 -169218073 - AluSc SINE Alu -74 235 1 4412 186 34 17 chrX 7757345 7758672 -169215468 + L1MB7 LINE L1 4831 6184 0 1747 147 0 52 chrX 7758682 7758988 -169215152 + AluJb SINE Alu 1 290 -22 513 213 0 39 chrX 7759158 7759285 -169214855 - L2 LINE L2 0 3313 3192 2260 143 75 6 chrX 7759362 7759813 -169214327 - MER31A LTR ERV1 0 661 1 426 318 42 5 chrX 7761081 7761270 -169212870 + MER117 DNA MER1_type 2 197 0 180 315 54 43 chrX 7761787 7761879 -169212261 + L2 LINE L2 3172 3264 -49 2028 146 6 19 chrX 7762294 7762610 -169211530 - AluJb SINE Alu 0 312 1 930 171 59 18 chrX 7763269 7763491 -169210649 - L1MA7 LINE L1 0 6291 6061 29 0 0 0 chrX 7763495 7763524 -169210616 + AT_rich Low_complexity Low_complexity 1 29 0 2144 188 71 29 chrX 7763573 7764052 -169210088 - MLT1D LTR MaLR -2 503 5 327 260 50 72 chrX 7764894 7765075 -169209065 + L1ME1 LINE L1 910 1086 -5298 803 147 0 0 chrX 7765547 7765663 -169208477 + FLAM_C SINE Alu 1 116 -27 635 244 28 28 chrX 7765830 7766006 -169208134 + MER58C DNA MER1_type 39 214 -1 570 286 127 71 chrX 7766131 7766621 -169207519 + L1ME1 LINE L1 3617 4133 -2249 3755 209 32 43 chrX 7766705 7767101 -169207039 + L1ME1 LINE L1 4537 4936 -1466 2483 64 0 0 chrX 7767101 7767399 -169206741 + AluY SINE Alu 1 298 -13 3755 209 32 43 chrX 7767399 7768069 -169206071 + L1ME1 LINE L1 4936 5612 -790 3223 69 30 7 chrX 7768069 7768503 -169205637 - MLT2A1 LTR ERVL 0 444 1 3755 209 32 43 chrX 7768503 7768812 -169205328 + L1ME1 LINE L1 5612 5923 -479 2009 139 3 7 chrX 7768812 7769113 -169205027 + AluJb SINE Alu 1 300 -12 3755 209 32 43 chrX 7769113 7769618 -169204522 + L1ME1 LINE L1 5923 6394 -8 309 306 36 0 chrX 7769618 7769729 -169204411 + L1ME1 LINE L1 5985 6099 -303 2040 130 0 33 chrX 7769938 7770237 -169203903 + AluJb SINE Alu 3 291 -21 961 188 34 19 chrX 7771860 7772067 -169202073 - MER58A DNA MER1_type 0 224 15 423 247 82 29 chrX 7772112 7772282 -169201858 + MER112 DNA MER1_type 17 195 -65 2386 85 0 19 chrX 7775350 7775667 -169198473 + AluSx SINE Alu 1 311 -1 893 210 15 25 chrX 7775851 7776051 -169198089 - MER58A DNA MER1_type 0 224 27 198 196 22 22 chrX 7776120 7776166 -169197974 - MIR SINE MIR -6 256 211 318 297 0 0 chrX 7777069 7777143 -169196997 + MIR SINE MIR 24 97 -111 4994 81 21 11 chrX 7777171 7777887 -169196253 + L1MA1 LINE L1 5573 6295 -7 26 0 0 0 chrX 7777900 7777926 -169196214 + AT_rich Low_complexity Low_complexity 1 26 0 207 100 0 0 chrX 7778600 7778630 -169195510 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 333 311 33 0 chrX 7778636 7778758 -169195382 + MIR SINE MIR 131 256 -6 2173 151 15 15 chrX 7780575 7780622 -169193518 - L1MB5 LINE L1 0 6174 6128 762 142 0 55 chrX 7780622 7780749 -169193391 + FLAM_C SINE Alu 1 120 -13 2173 151 15 15 chrX 7780749 7781099 -169193041 - L1MB5 LINE L1 -45 6129 5777 211 295 129 65 chrX 7781231 7781370 -169192770 + MIR3 SINE MIR 45 192 -16 262 333 145 0 chrX 7782877 7782994 -169191146 - MIR SINE MIR -74 188 55 180 0 0 0 chrX 7783135 7783155 -169190985 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 182 31 0 62 chrX 7783173 7783205 -169190935 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 907 174 82 31 chrX 7783850 7784046 -169190094 + MER3 DNA MER1_type 4 209 0 515 278 93 49 chrX 7784122 7784510 -169189630 - MLT1L LTR MaLR -11 604 200 1217 169 47 0 chrX 7785997 7786210 -169187930 - MER58A DNA MER1_type 0 224 2 1068 227 28 0 chrX 7786696 7786912 -169187228 + MER58A DNA MER1_type 1 222 -2 1210 148 5 49 chrX 7787801 7788024 -169186116 + AluJb SINE Alu 89 301 -11 262 340 120 5 chrX 7789351 7789542 -169184598 - L2 LINE L2 -494 2820 2608 842 271 25 60 chrX 7789846 7790249 -169183891 - L1MC4a LINE L1 -1896 5912 5524 1163 194 9 0 chrX 7790410 7790626 -169183514 + MER20 DNA MER1_type 1 218 -1 1944 178 140 88 chrX 7791160 7791761 -169182379 - MLT1E1 LTR MaLR -6 648 17 2072 129 9 31 chrX 7791798 7791830 -169182310 - AluSx SINE Alu -1 311 280 438 20 0 0 chrX 7791830 7791881 -169182259 + (TG)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chrX 7791880 7791908 -169182232 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 2072 129 9 31 chrX 7791881 7792193 -169181947 - AluSx SINE Alu -32 280 1 248 316 86 29 chrX 7792332 7792506 -169181634 - MLT1H LTR MaLR -146 403 220 449 273 134 21 chrX 7793255 7793449 -169180691 + MIR SINE MIR 47 262 0 23 0 0 0 chrX 7793893 7793916 -169180224 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 7795928 7795957 -169178183 + (TG)n Simple_repeat Simple_repeat 2 30 0 243 88 0 0 chrX 7795978 7796012 -169178128 + (TA)n Simple_repeat Simple_repeat 2 35 0 520 231 93 56 chrX 7796891 7797107 -169177033 - MLT1H LTR MaLR -300 249 26 639 185 31 87 chrX 7797873 7798068 -169176072 + MER20 DNA MER1_type 3 186 -33 1378 156 15 0 chrX 7798468 7798731 -169175409 - L1MD3 LINE L1 0 7995 7729 208 333 14 0 chrX 7798932 7799001 -169175139 - L2 LINE L2 0 3313 3244 416 307 99 40 chrX 7799185 7799595 -169174545 - L2 LINE L2 -278 2994 2573 2087 145 3 0 chrX 7800229 7800540 -169173600 - AluSx SINE Alu 0 312 1 986 217 17 43 chrX 7800580 7800810 -169173330 + MER58A DNA MER1_type 1 224 0 251 136 12 136 chrX 7802337 7802418 -169171722 - MLT1H LTR MaLR 0 549 479 1155 199 4 18 chrX 7802516 7802742 -169171398 + MER58A DNA MER1_type 1 223 -1 185 333 18 0 chrX 7803090 7803147 -169170993 - L2 LINE L2 -5 3308 3251 * 697 252 78 18 chrX 7803120 7803314 -169170826 - MIR SINE MIR -30 232 22 1134 219 0 0 chrX 7803314 7803538 -169170602 - MER58A DNA MER1_type 0 224 1 697 252 78 18 chrX 7803538 7803561 -169170579 - MIR SINE MIR -240 22 2 2116 100 61 50 chrX 7805177 7805537 -169168603 - THE1B LTR MaLR 0 364 1 241 150 0 0 chrX 7805835 7805875 -169168265 - MLT2E LTR ERVL -544 84 45 188 315 0 37 chrX 7806516 7806570 -169167570 + MIR SINE MIR 47 98 -164 295 271 172 0 chrX 7806579 7806701 -169167439 - MIR SINE MIR -3 259 117 997 181 34 15 chrX 7806843 7807047 -169167093 - MER3 DNA MER1_type -1 208 1 850 185 99 6 chrX 7810282 7810444 -169163696 + MER45A DNA AcHobo 1 177 -1 1008 199 28 9 chrX 7810927 7811138 -169163002 + MER20 DNA MER1_type 1 215 -4 21 0 0 0 chrX 7811275 7811296 -169162844 + AT_rich Low_complexity Low_complexity 1 21 0 613 211 111 6 chrX 7811988 7812159 -169161981 + MER5A DNA MER1_type 1 189 0 312 91 0 0 chrX 7812388 7812432 -169161708 + (T)n Simple_repeat Simple_repeat 1 44 0 1116 211 9 47 chrX 7812476 7812708 -169161432 - MER58A DNA MER1_type 0 224 2 251 360 58 58 chrX 7813682 7813943 -169160197 + L2 LINE L2 1711 1971 -1343 633 290 94 86 chrX 7813950 7814687 -169159453 + L2 LINE L2 2146 2888 -426 186 279 188 55 chrX 7814853 7815018 -169159122 + L2 LINE L2 3122 3308 -5 25 31 0 0 chrX 7815133 7815165 -169158975 + AT_rich Low_complexity Low_complexity 1 32 0 3054 228 88 34 chrX 7815805 7816070 -169158070 + L1M4 LINE L1 2204 2453 -3693 1876 201 48 38 chrX 7816070 7816462 -169157678 + MSTD LTR MaLR 1 396 0 3054 228 88 34 chrX 7816462 7816511 -169157629 + L1M4 LINE L1 2453 2498 -3648 1937 157 3 0 chrX 7816511 7816792 -169157348 + AluSx SINE Alu 5 289 -23 234 0 0 0 chrX 7816792 7816818 -169157322 + (GGA)n Simple_repeat Simple_repeat 3 28 0 1937 157 3 0 chrX 7816818 7816836 -169157304 + AluSx SINE Alu 289 305 -7 3054 228 88 34 chrX 7816836 7817661 -169156479 + L1M4 LINE L1 2498 3414 -2732 2304 78 0 45 chrX 7817661 7817970 -169156170 + AluSg SINE Alu 1 295 -15 3054 228 88 34 chrX 7817970 7818016 -169156124 + L1M4 LINE L1 3414 3456 -2690 2101 132 0 0 chrX 7818016 7818312 -169155828 + AluSx SINE Alu 1 296 -16 1515 204 102 1 chrX 7818360 7818699 -169155441 + L1ME1 LINE L1 5805 6333 -1 250 304 92 54 chrX 7818750 7819414 -169154726 + L1ME LINE L1 3287 3975 -2171 327 332 43 32 chrX 7819611 7819798 -169154342 + L1ME LINE L1 4620 4808 -1338 264 307 67 57 chrX 7820060 7820360 -169153780 + L1ME LINE L1 5295 5594 -527 2262 95 7 3 chrX 7820373 7820668 -169153472 + AluSq SINE Alu 1 296 -17 687 189 237 0 chrX 7820724 7820893 -169153247 - MER58C DNA MER1_type -6 209 1 2030 78 0 12 chrX 7821055 7821312 -169152828 + AluY SINE Alu 35 288 -23 2932 199 34 27 chrX 7821445 7822032 -169152108 + MLT1E LTR MaLR 1 591 -2 1057 166 37 32 chrX 7823927 7824144 -169149996 - MER20 DNA MER1_type 0 219 2 260 141 58 16 chrX 7824570 7824691 -169149449 + (TTAAA)n Simple_repeat Simple_repeat 2 127 0 294 350 41 41 chrX 7825238 7825361 -169148779 + L2 LINE L2 3141 3263 -9 278 169 15 0 chrX 7825362 7825427 -169148713 + GA-rich Low_complexity Low_complexity 3 68 0 342 228 44 9 chrX 7827738 7827852 -169146288 - L1ME4a LINE L1 -3 6118 6001 1284 149 13 53 chrX 7828191 7828419 -169145721 + MER20 DNA MER1_type 1 219 0 206 164 194 30 chrX 7828577 7828644 -169145496 + MIR SINE MIR 173 250 -12 1751 205 15 3 chrX 7829406 7829737 -169144403 + MER58B DNA MER1_type 2 336 -5 404 284 135 59 chrX 7830017 7830379 -169143761 - L2 LINE L2 0 3313 2218 538 313 95 3 chrX 7830522 7830826 -169143314 + ERVL LTR ERVL 3704 4035 -1729 979 262 59 57 chrX 7830870 7831342 -169142798 + MLT1J1 LTR MaLR 1 442 -4 1868 170 36 36 chrX 7831396 7831761 -169142379 + MLT1A1 LTR MaLR 1 365 0 767 229 0 24 chrX 7831814 7831980 -169142160 - MLT1E LTR MaLR -429 164 3 21 71 0 0 chrX 7832330 7832372 -169141768 + AT_rich Low_complexity Low_complexity 1 42 0 297 75 0 0 chrX 7832480 7832520 -169141620 + (TTA)n Simple_repeat Simple_repeat 3 42 0 1477 198 215 73 chrX 7834038 7834559 -169139581 + MLT1G1 LTR MaLR 1 595 0 763 301 64 61 chrX 7834798 7835173 -169138967 - MER115 DNA AcHobo -259 434 59 182 390 21 0 chrX 7835469 7835564 -169138576 + MIR SINE MIR 25 121 -87 1322 204 14 0 chrX 7835779 7836000 -169138140 - MER58A DNA MER1_type 0 224 1 29 0 0 0 chrX 7836420 7836449 -169137691 + AT_rich Low_complexity Low_complexity 1 29 0 209 360 22 0 chrX 7836560 7836649 -169137491 - L3 LINE CR1 -5 1572 1482 473 260 7 47 chrX 7837282 7837432 -169136708 + MIR SINE MIR 68 211 -51 633 278 150 50 chrX 7837434 7837502 -169136638 + MLT1K LTR MaLR 1 61 -527 2304 235 72 30 chrX 7837502 7838069 -169136071 - MLT1E LTR MaLR 0 593 3 633 278 150 50 chrX 7838069 7838381 -169135759 + MLT1K LTR MaLR 61 419 -169 8095 21 11 0 chrX 7838678 7839568 -169134572 + L1PA4 LINE L1 5254 6153 -2 21 57 0 0 chrX 7843706 7843741 -169130399 + AT_rich Low_complexity Low_complexity 1 35 0 2193 122 0 0 chrX 7843789 7844084 -169130056 + AluSx SINE Alu 1 295 -17 984 244 37 9 chrX 7844109 7844326 -169129814 - MER58A DNA MER1_type -1 223 1 1574 186 19 6 chrX 7844335 7844653 -169129487 - MER33 DNA MER1_type -1 323 2 2467 83 3 3 chrX 7845610 7845923 -169128217 + AluSp SINE Alu 1 313 0 2029 190 47 30 chrX 7846131 7846558 -169127582 + MER90 LTR ERV1 1 434 -141 2937 163 39 0 chrX 7846572 7847062 -169127078 - MER68 LTR ERV1 -53 509 1 781 211 21 0 chrX 7847062 7847201 -169126939 + MER90 LTR ERV1 473 614 0 202 216 0 0 chrX 7847416 7847453 -169126687 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 302 265 49 20 chrX 7847742 7847844 -169126296 - MIR SINE MIR -137 125 21 26 0 0 0 chrX 7850604 7850630 -169123510 + AT_rich Low_complexity Low_complexity 1 26 0 1918 159 30 0 chrX 7850630 7850931 -169123209 + AluJb SINE Alu 1 310 -2 213 39 0 0 chrX 7851057 7851083 -169123057 + (T)n Simple_repeat Simple_repeat 1 26 0 6148 55 0 11 chrX 7851083 7851841 -169122299 - L1PA5 LINE L1 -44 6110 5361 1872 151 0 31 chrX 7852033 7852350 -169121790 - AluJo SINE Alu -5 307 1 209 333 0 0 chrX 7852735 7852792 -169121348 + MIR3 SINE MIR 151 207 -1 6420 176 31 31 chrX 7853027 7853616 -169120524 + L1MB3 LINE L1 3839 4427 -1756 2539 51 3 16 chrX 7853616 7853931 -169120209 + AluY SINE Alu 1 311 0 6420 176 31 31 chrX 7853931 7854820 -169119320 + L1MB3 LINE L1 4427 5327 -856 2929 118 29 2 chrX 7854820 7855237 -169118903 + MSTA LTR MaLR 1 428 0 6420 176 31 31 chrX 7855237 7856093 -169118047 + L1MB3 LINE L1 5327 6182 -1 623 267 120 4 chrX 7857051 7857276 -169116864 - MLT1I LTR MaLR -2 407 157 4470 254 60 46 chrX 7858531 7859039 -169115101 + HAL1 LINE L1 2 501 -2006 1058 205 38 0 chrX 7859039 7859249 -169114891 + MER20 DNA MER1_type 1 218 -1 4470 254 60 46 chrX 7859249 7860163 -169113977 + HAL1 LINE L1 501 1456 -1051 2361 86 0 10 chrX 7860163 7860464 -169113676 + AluSc SINE Alu 1 298 -11 4470 254 60 46 chrX 7860464 7860788 -169113352 + HAL1 LINE L1 1456 1774 -733 939 289 99 46 chrX 7860863 7861448 -169112692 + HAL1 LINE L1 1889 2504 -3 242 325 77 26 chrX 7861472 7861589 -169112551 - L2 LINE L2 -22 3291 3169 303 210 120 20 chrX 7862806 7862906 -169111234 + MIR SINE MIR 20 129 -133 186 196 54 36 chrX 7864112 7864168 -169109972 - MER5A DNA MER1_type -8 181 125 345 172 0 0 chrX 7864194 7864258 -169109882 + T-rich Low_complexity Low_complexity 5 68 0 1983 147 33 0 chrX 7864268 7864568 -169109572 - AluSx SINE Alu 0 312 3 342 163 0 0 chrX 7864576 7864644 -169109496 - MER5A DNA MER1_type -118 71 4 1080 233 5 5 chrX 7864659 7864878 -169109262 + MER58A DNA MER1_type 5 223 -1 367 280 8 25 chrX 7865519 7865637 -169108503 - L2 LINE L2 -3 3269 3154 1230 46 0 0 chrX 7867212 7867364 -169106776 - L1PA4 LINE L1 -11 6144 5993 436 287 191 19 chrX 7867549 7867925 -169106215 - MLT1H1 LTR MaLR 0 555 115 3471 188 72 38 chrX 7868079 7868903 -169105237 - MER21B LTR ERV1 -11 852 1 733 59 20 0 chrX 7870961 7871063 -169103077 - L1PA4 LINE L1 -1137 5009 4906 7463 31 1 1 chrX 7871063 7872199 -169101941 + L1PA4 LINE L1 5011 6146 -9 397 153 59 0 chrX 7872933 7873018 -169101122 + MER53 DNA DNA 99 188 -1 2622 161 11 30 chrX 7873163 7873629 -169100511 + MSTB2 LTR MaLR 1 457 0 377 258 189 0 chrX 7873850 7873982 -169100158 - MER20 DNA MER1_type -56 163 7 344 258 124 0 chrX 7874141 7874238 -169099902 + L2 LINE L2 3201 3309 -4 369 0 0 0 chrX 7874373 7874414 -169099726 + (CA)n Simple_repeat Simple_repeat 1 41 0 181 268 18 71 chrX 7874546 7874602 -169099538 - L2 LINE L2 -19 3253 3201 426 274 113 62 chrX 7874789 7875179 -169098961 - MLT1J2 LTR MaLR -18 432 23 22 35 0 0 chrX 7877356 7877385 -169096755 + AT_rich Low_complexity Low_complexity 1 29 0 822 253 0 36 chrX 7877951 7878172 -169095968 - MER58A DNA MER1_type 0 224 12 440 276 10 0 chrX 7878704 7878802 -169095338 + MIR SINE MIR 4 102 -160 417 241 36 72 chrX 7878809 7878975 -169095165 + MLT1J LTR MaLR 27 186 -325 302 257 134 31 chrX 7878980 7879341 -169094799 - L1MEd LINE L1 -4843 1184 926 401 379 67 29 chrX 7879399 7879713 -169094427 - L1MEd LINE L1 -5261 858 533 399 258 115 52 chrX 7880117 7880404 -169093736 + MLT1J LTR MaLR 203 507 -4 508 192 253 61 chrX 7880563 7880792 -169093348 + MLT1H LTR MaLR 261 533 -16 23 54 0 0 chrX 7880839 7880876 -169093264 + AT_rich Low_complexity Low_complexity 1 37 0 291 380 20 0 chrX 7881248 7881348 -169092792 + MIR SINE MIR 30 131 -77 230 235 296 0 chrX 7881340 7881438 -169092702 + L2 LINE L2 3136 3262 -10 * 23 33 0 0 chrX 7881833 7881863 -169092277 + AT_rich Low_complexity Low_complexity 1 30 0 658 269 36 0 chrX 7884969 7885162 -169088978 + MLT1J2 LTR MaLR 6 205 -245 657 261 103 54 chrX 7885214 7885266 -169088874 - MLT1H LTR MaLR -16 533 485 1201 209 8 4 chrX 7885266 7885501 -169088639 + MER8 DNA MER2_type 2 237 -2 657 261 103 54 chrX 7885501 7885709 -169088431 - MLT1H LTR MaLR -64 485 260 180 0 0 0 chrX 7886295 7886315 -169087825 + (A)n Simple_repeat Simple_repeat 1 20 0 2816 140 81 0 chrX 7887101 7887468 -169086672 - L1MB5 LINE L1 -18 6156 5737 258 105 0 0 chrX 7887468 7887506 -169086634 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 2816 140 81 0 chrX 7887506 7887631 -169086509 - L1MB5 LINE L1 -437 5737 5624 991 156 11 11 chrX 7887631 7887810 -169086330 + MER58A DNA MER1_type 46 224 0 2167 116 0 0 chrX 7887950 7888293 -169085847 + AluSx SINE Alu 1 312 0 359 233 0 150 chrX 7888567 7888637 -169085503 - MER5A DNA MER1_type -63 126 84 2421 74 3 7 chrX 7888637 7888946 -169085194 - AluSp SINE Alu -5 308 1 359 233 0 150 chrX 7888946 7889008 -169085132 - MER5A DNA MER1_type -105 84 14 528 228 13 0 chrX 7889040 7889159 -169084981 - MER5B DNA MER1_type -17 161 46 771 189 31 42 chrX 7890127 7890318 -169083822 + MER5A DNA MER1_type 1 189 0 298 319 92 32 chrX 7890495 7890746 -169083394 - MLT1I LTR MaLR -125 284 19 2777 94 8 3 chrX 7891653 7892026 -169082114 - THE1C LTR MaLR 0 375 1 349 274 71 9 chrX 7892188 7892301 -169081839 + MIR SINE MIR 47 166 -96 21 57 0 0 chrX 7892598 7892633 -169081507 + AT_rich Low_complexity Low_complexity 1 35 0 2520 207 65 26 chrX 7893035 7893606 -169080534 + MLT1E LTR MaLR 1 593 0 548 227 117 0 chrX 7894779 7894907 -169079233 + MLT1E LTR MaLR 1 143 -450 483 200 23 0 chrX 7895078 7895184 -169078956 + MER5A DNA MER1_type 4 112 -77 589 122 30 69 chrX 7895684 7895758 -169078382 + L1MD3 LINE L1 7870 7938 -57 2197 129 0 7 chrX 7895758 7896067 -169078073 - AluSx SINE Alu -5 307 1 589 122 30 69 chrX 7896067 7896123 -169078017 + L1MD3 LINE L1 7938 7995 0 433 238 56 134 chrX 7896561 7897061 -169077079 - LTR67 LTR ERVL -2 555 95 394 284 0 18 chrX 7897078 7897187 -169076953 - MER81 DNA DNA 0 114 8 369 0 0 0 chrX 7897567 7897608 -169076532 + (CA)n Simple_repeat Simple_repeat 1 41 0 2847 142 21 19 chrX 7897674 7898159 -169075981 + MER66B LTR ERV1 1 486 0 852 188 67 58 chrX 7898612 7898769 -169075371 - MER63A DNA MER1_type -1478 210 49 2082 141 3 0 chrX 7898769 7899060 -169075080 - AluSx SINE Alu -20 292 1 852 188 67 58 chrX 7899060 7899110 -169075030 - MER63A DNA MER1_type -1639 49 1 443 253 51 56 chrX 7899792 7899905 -169074235 - MLT1L LTR MaLR -349 266 153 1195 139 8 92 chrX 7899905 7900143 -169073997 - MER20 DNA MER1_type 0 219 2 443 253 51 56 chrX 7900143 7900207 -169073933 - MLT1L LTR MaLR -462 153 90 3739 244 46 37 chrX 7900283 7901768 -169072372 + L2 LINE L2 1816 3311 -2 621 229 21 47 chrX 7901968 7902204 -169071936 - L1MC5 LINE L1 -548 7413 7184 463 276 101 60 chrX 7902691 7902908 -169071232 - L1MDa LINE L1 -3688 2441 2216 227 264 0 0 chrX 7903413 7903485 -169070655 - L1MDa LINE L1 -4625 1504 1433 612 249 74 11 chrX 7903590 7903859 -169070281 - L1MDa LINE L1 -4869 1250 965 336 314 33 71 chrX 7903875 7904085 -169070055 - L1ME3A LINE L1 -2 6168 5967 288 227 73 92 chrX 7904146 7904419 -169069721 - L1MDa LINE L1 -5167 952 685 247 254 0 15 chrX 7904520 7904587 -169069553 - L1MDa LINE L1 -5598 521 456 244 246 0 0 chrX 7904588 7904645 -169069495 + (TTA)n Simple_repeat Simple_repeat 1 57 0 1256 308 40 4 chrX 7905046 7905550 -169068590 + L1MC4a LINE L1 5405 5926 -1882 367 281 74 15 chrX 7906861 7907064 -169067076 - L1ME3A LINE L1 -399 5763 5549 1269 258 39 53 chrX 7907169 7907657 -169066483 + LTR16C LTR ERVL 1 481 -10 2247 130 0 0 chrX 7907978 7908286 -169065854 + AluSx SINE Alu 1 308 -4 180 0 0 0 chrX 7908337 7908357 -169065783 + (T)n Simple_repeat Simple_repeat 1 20 0 14819 117 37 13 chrX 7908966 7911268 -169062872 - Tigger1 DNA MER2_type 0 2418 55 315 19 38 19 chrX 7911268 7911321 -169062819 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 14819 117 37 13 chrX 7911321 7911376 -169062764 - Tigger1 DNA MER2_type -2363 55 3 395 285 31 23 chrX 7911441 7911571 -169062569 + MIR SINE MIR 47 177 -85 307 256 88 60 chrX 7911833 7912150 -169061990 - L1ME4a LINE L1 -188 5933 5608 989 43 0 0 chrX 7912154 7912271 -169061869 - AluY SINE Alu -1 310 194 279 239 14 0 chrX 7912271 7912342 -169061798 - L1ME4a LINE L1 -506 5615 5544 818 172 18 24 chrX 7914082 7914251 -169059889 - MER20 DNA MER1_type 0 219 52 473 124 33 91 chrX 7964696 7964817 -169009323 - L1MA9 LINE L1 -298 6014 5901 290 237 122 53 chrX 7965294 7965425 -169008715 - MER5B DNA MER1_type 0 178 39 1747 167 21 7 chrX 7966584 7966871 -169007269 + AluJb SINE Alu 1 291 -21 182 323 32 0 chrX 7967785 7967847 -169006293 + L2 LINE L2 339 402 -2912 1158 190 9 0 chrX 7967851 7968067 -169006073 - MER58A DNA MER1_type 0 224 7 367 353 25 34 chrX 7968962 7969200 -169004940 + L2 LINE L2 2819 3054 -218 200 271 0 0 chrX 7969251 7969299 -169004841 - L2 LINE L2 -15 3298 3251 2877 206 64 18 chrX 7969916 7970539 -169003601 + MER82 DNA MER2_type 1 652 -1 2360 95 0 0 chrX 7972072 7972368 -169001772 + AluSx SINE Alu 1 296 -16 470 198 78 54 chrX 7972379 7972538 -169001602 + MLT1H LTR MaLR 382 589 -6 227 313 83 28 chrX 7973235 7973379 -169000761 + L2 LINE L2 2934 3085 -187 2011 152 16 7 chrX 7973409 7973718 -169000422 - AluJb SINE Alu 0 312 1 828 210 54 114 chrX 7973812 7973991 -169000149 - MLT1G LTR MaLR -190 400 212 2626 67 3 0 chrX 7973991 7974303 -168999837 - AluSp SINE Alu 0 313 1 828 210 54 114 chrX 7974303 7974577 -168999563 - MLT1G LTR MaLR -378 212 11 246 247 86 11 chrX 7974605 7974698 -168999442 - L1ME4a LINE L1 -45 6076 5977 1001 266 24 20 chrX 7974805 7975053 -168999087 + MIR SINE MIR 9 257 -5 213 60 20 40 chrX 7975918 7975968 -168998172 + (TTTTTG)n Simple_repeat Simple_repeat 2 50 0 3333 146 26 36 chrX 7976476 7977080 -168997060 - L1MB7 LINE L1 -11 6173 5576 1396 246 66 22 chrX 7977099 7977436 -168996704 - L1ME3A LINE L1 -5 6165 5801 1656 203 15 12 chrX 7977436 7977776 -168996364 - MER58B DNA MER1_type 0 341 1 1396 246 66 22 chrX 7977776 7977890 -168996250 - L1ME3A LINE L1 -369 5801 5694 934 228 13 35 chrX 7978282 7978510 -168995630 - MER58A DNA MER1_type -1 223 1 239 237 0 34 chrX 7978524 7978583 -168995557 - L2 LINE L2 -18 3295 3239 876 118 0 0 chrX 7978811 7978947 -168995193 + (GA)n Simple_repeat Simple_repeat 2 137 0 259 233 58 35 chrX 7979774 7979860 -168994280 + L1ME3A LINE L1 5864 5951 -219 205 307 67 0 chrX 7980197 7980272 -168993868 + MIR SINE MIR 106 185 -77 764 223 31 0 chrX 7980701 7980894 -168993246 + MER20 DNA MER1_type 14 212 -7 246 207 35 0 chrX 7981067 7981125 -168993015 - MER5A DNA MER1_type -80 109 50 582 256 18 0 chrX 7981317 7981481 -168992659 + MER5B DNA MER1_type 5 171 -7 215 178 44 0 chrX 7981533 7981578 -168992562 - MER5A DNA MER1_type -80 109 63 225 65 0 0 chrX 7982140 7982171 -168991969 + (CA)n Simple_repeat Simple_repeat 1 31 0 268 177 65 16 chrX 7982548 7982610 -168991530 - MER68 LTR ERV1 -128 434 370 * 603 247 130 53 chrX 7982595 7982653 -168991487 + LTR16C LTR ERVL 226 278 -213 3499 168 7 2 chrX 7982653 7983212 -168990928 + MER68 LTR ERV1 1 562 0 603 247 130 53 chrX 7983212 7983400 -168990740 + LTR16C LTR ERVL 278 491 0 255 243 37 37 chrX 7983496 7983603 -168990537 + L1ME3A LINE L1 5069 5175 -971 2253 89 0 20 chrX 7983616 7983919 -168990221 + AluSx SINE Alu 1 297 -15 877 235 11 0 chrX 7984078 7984265 -168989875 - MER5A DNA MER1_type 0 189 1 28 29 0 0 chrX 7984343 7984378 -168989762 + AT_rich Low_complexity Low_complexity 1 35 0 215 351 78 0 chrX 7984415 7984492 -168989648 + L2 LINE L2 3121 3203 -69 2449 90 7 0 chrX 7984716 7985026 -168989114 + AluSx SINE Alu 1 312 0 25 65 0 0 chrX 7985160 7985206 -168988934 + AT_rich Low_complexity Low_complexity 1 46 0 326 250 75 19 chrX 7985657 7985817 -168988323 + L1MDa LINE L1 1609 1777 -4763 1057 217 96 35 chrX 7985826 7986171 -168987969 + L1ME3A LINE L1 5802 6167 -3 692 201 126 0 chrX 7986922 7987096 -168987044 - MLT1F LTR MaLR -4 538 343 1058 206 50 21 chrX 7987128 7987366 -168986774 - MLT1F LTR MaLR -291 251 7 236 137 260 0 chrX 7988155 7988228 -168985912 - MIR SINE MIR -124 138 47 566 178 0 0 chrX 7988406 7988507 -168985633 - MLT1B LTR MaLR -7 383 283 586 234 0 0 chrX 7988518 7988646 -168985494 - MLT1B LTR MaLR -262 128 1 269 219 0 0 chrX 7989556 7989620 -168984520 - L2 LINE L2 -328 2985 2922 264 314 29 0 chrX 7989776 7989878 -168984262 - L2 LINE L2 -336 2977 2873 591 282 64 15 chrX 7990169 7990650 -168983490 + L2 LINE L2 2553 3061 -252 1156 178 5 0 chrX 7990826 7991034 -168983106 + MER20 DNA MER1_type 11 219 0 2253 103 7 0 chrX 7991086 7991387 -168982753 + AluSx SINE Alu 1 303 -9 192 329 129 0 chrX 7991683 7991768 -168982372 - MER5A DNA MER1_type -33 156 61 325 313 121 6 chrX 7991785 7991951 -168982189 - L1MC4 LINE L1 0 8042 7858 1232 192 12 8 chrX 7991952 7992202 -168981938 + Charlie1b DNA MER1_type 5 255 -268 1120 246 112 35 chrX 7992306 7992471 -168981669 - MLT1F1 LTR MaLR 0 567 416 2361 95 0 3 chrX 7992471 7992775 -168981365 + AluSx SINE Alu 1 303 -9 1120 246 112 35 chrX 7992775 7993073 -168981067 - MLT1F1 LTR MaLR -151 416 68 283 256 39 62 chrX 7993256 7993385 -168980755 - L1MC4 LINE L1 -373 7669 7544 285 51 0 0 chrX 7993617 7993656 -168980484 + (GA)n Simple_repeat Simple_repeat 1 39 0 281 250 100 10 chrX 7994157 7994257 -168979883 - MIR SINE MIR -71 191 83 327 319 48 66 chrX 7994535 7994593 -168979547 - MIR3 SINE MIR -1 207 149 1366 126 14 31 chrX 7994593 7994816 -168979324 + MER20 DNA MER1_type 1 219 0 327 319 48 66 chrX 7994816 7994923 -168979217 - MIR3 SINE MIR -59 149 45 445 296 65 46 chrX 7998603 7999019 -168975121 + L1ME4a LINE L1 5697 6120 -1 282 359 34 0 chrX 7999225 7999342 -168974798 - L3b LINE CR1 -209 1374 1254 1062 113 0 0 chrX 7999362 7999503 -168974637 - FRAM SINE Alu -16 160 20 860 151 65 121 chrX 7999606 7999838 -168974302 + MER20 DNA MER1_type 1 219 0 261 136 45 0 chrX 8000251 8000317 -168973823 + (TA)n Simple_repeat Simple_repeat 1 69 0 1735 109 29 0 chrX 8000317 8000556 -168973584 - AluSx SINE Alu -21 291 46 267 279 95 68 chrX 8001055 8001202 -168972938 + MIR SINE MIR 74 224 -38 431 138 9 207 chrX 8001481 8001603 -168972537 + MER96B DNA MER1_type? 244 306 -111 2514 99 0 0 chrX 8001603 8001916 -168972224 - AluSq SINE Alu 0 313 1 431 138 9 207 chrX 8001916 8002010 -168972130 + MER96B DNA MER1_type? 306 417 0 225 0 0 0 chrX 8002123 8002148 -168971992 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 319 296 86 49 chrX 8002634 8002796 -168971344 + MER63B DNA MER1_type 1 168 -268 876 183 47 0 chrX 8002950 8003141 -168970999 - MER3 DNA MER1_type -1 208 9 2392 183 40 36 chrX 8003505 8004003 -168970137 + MLT1D LTR MaLR 4 503 -2 254 271 54 124 chrX 8004015 8004223 -168969917 - L2 LINE L2 0 3272 3102 1717 173 78 30 chrX 8004223 8004594 -168969546 + MLT1B LTR MaLR 2 390 0 254 271 54 124 chrX 8004594 8004773 -168969367 - L2 LINE L2 -170 3102 2912 2149 129 7 3 chrX 8004834 8005144 -168968996 - AluSq SINE Alu 0 313 3 2447 166 37 68 chrX 8005170 8005412 -168968728 + MER21B LTR ERV1 66 314 -549 2072 55 0 0 chrX 8005412 8005669 -168968471 + L1PA5 LINE L1 5895 6151 -3 2447 166 37 68 chrX 8005669 8005987 -168968153 + MER21B LTR ERV1 314 609 -254 2354 91 3 0 chrX 8005990 8006287 -168967853 - AluSg SINE Alu -12 298 1 2011 139 3 10 chrX 8006289 8006584 -168967556 - AluJo SINE Alu -19 293 1 534 295 91 9 chrX 8006712 8007054 -168967086 + L1MC4a LINE L1 4399 4768 -1378 806 258 83 61 chrX 8007069 8007306 -168966834 + L1MC4a LINE L1 5419 5649 -2159 762 143 15 15 chrX 8007306 8007439 -168966701 + FLAM_C SINE Alu 1 133 0 806 258 83 61 chrX 8007439 8007492 -168966648 + L1MC4a LINE L1 5649 5699 -2109 2413 82 0 0 chrX 8007492 8007784 -168966356 - AluSg SINE Alu -18 292 1 806 258 83 61 chrX 8007784 8007853 -168966287 + L1MC4a LINE L1 5699 5787 -2021 239 136 25 86 chrX 8007901 8007982 -168966158 + MLT1C-int LTR MaLR 1295 1370 -1 976 240 103 25 chrX 8008004 8008407 -168965733 + MLT1C LTR MaLR 21 390 -6 707 221 0 0 chrX 8008431 8008562 -168965578 - FLAM_A SINE Alu -2 131 1 336 215 75 0 chrX 8008564 8008671 -168965469 + L1MC4a LINE L1 5860 5974 -1834 228 324 0 0 chrX 8008674 8008748 -168965392 + (TA)n Simple_repeat Simple_repeat 2 75 0 2237 108 0 0 chrX 8008853 8009139 -168965001 + AluSx SINE Alu 5 290 -22 3390 169 77 6 chrX 8009145 8009847 -168964293 + L1MB8 LINE L1 5427 6178 0 485 252 170 8 chrX 8009826 8010191 -168963949 + L1MC5 LINE L1 7489 7912 -49 * 1292 200 0 0 chrX 8011022 8011252 -168962888 + AluJo SINE Alu 76 305 -7 352 261 0 0 chrX 8013499 8013568 -168960572 + L2 LINE L2 3245 3313 0 1677 164 88 6 chrX 8013630 8013972 -168960168 + L1MB5 LINE L1 5799 6168 -6 324 214 19 48 chrX 8013978 8014081 -168960059 + L1ME3A LINE L1 5887 5986 -184 1687 173 33 0 chrX 8014221 8014493 -168959647 + AluJb SINE Alu 1 281 -31 304 280 98 76 chrX 8014503 8014728 -168959412 + L1ME4a LINE L1 5673 5902 -219 1990 149 10 0 chrX 8014825 8015120 -168959020 + AluSx SINE Alu 1 298 -14 243 0 0 0 chrX 8015379 8015406 -168958734 + (T)n Simple_repeat Simple_repeat 1 27 0 316 309 10 0 chrX 8016248 8016345 -168957795 + L1ME4a LINE L1 5493 5590 -531 349 267 166 32 chrX 8016385 8016572 -168957568 + L1ME4a LINE L1 5685 5896 -225 897 225 14 28 chrX 8016969 8017187 -168956953 + MER20 DNA MER1_type 4 218 -1 2308 108 0 0 chrX 8017207 8017504 -168956636 - AluSx SINE Alu -15 297 1 234 0 0 0 chrX 8017617 8017643 -168956497 + (CA)n Simple_repeat Simple_repeat 2 27 0 531 0 0 0 chrX 8017643 8017702 -168956438 + (TA)n Simple_repeat Simple_repeat 2 60 0 236 29 0 29 chrX 8018314 8018348 -168955792 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 461 264 40 40 chrX 8019494 8019668 -168954472 + MER5B DNA MER1_type 5 178 0 1058 263 79 71 chrX 8020389 8020780 -168953360 + L2 LINE L2 2288 2685 -629 1977 199 37 2 chrX 8020780 8021212 -168952928 + L1MB5 LINE L1 5720 6166 -8 1058 263 79 71 chrX 8021212 8021329 -168952811 + L2 LINE L2 2685 2800 -514 1020 154 82 82 chrX 8021475 8021651 -168952489 - L1MB2 LINE L1 -1 6170 5992 4888 133 20 19 chrX 8021651 8021870 -168952270 + LTR39 LTR ERV1 1 218 -565 2247 115 0 13 chrX 8021870 8022184 -168951956 + AluSx SINE Alu 1 310 -2 4888 133 20 19 chrX 8022184 8022746 -168951394 + LTR39 LTR ERV1 218 783 0 1020 154 82 82 chrX 8022746 8022849 -168951291 - L1MB2 LINE L1 -178 5993 5891 802 11 0 0 chrX 8022909 8022998 -168951142 + AluY SINE Alu 178 266 -45 264 158 13 145 chrX 8023003 8023079 -168951061 - MER21B LTR ERV1 -789 74 9 1916 125 23 38 chrX 8023079 8023424 -168950716 - L1MB2 LINE L1 -282 5889 5550 367 278 32 8 chrX 8023682 8023808 -168950332 + L1MC4 LINE L1 7913 8041 -1 582 260 108 28 chrX 8025376 8025626 -168948514 + L1MB8 LINE L1 5909 6178 0 1513 140 156 0 chrX 8026851 8027101 -168947039 + AluJo SINE Alu 1 289 -13 315 71 0 0 chrX 8027122 8027164 -168946976 + (TG)n Simple_repeat Simple_repeat 1 42 0 2116 107 0 14 chrX 8027164 8027445 -168946695 - AluSx SINE Alu -33 279 3 628 277 33 5 chrX 8027858 8028042 -168946098 - MER53 DNA DNA 0 189 1 302 247 14 0 chrX 8028226 8028299 -168945841 + GA-rich Low_complexity Low_complexity 1 74 0 2361 106 0 0 chrX 8030695 8031006 -168943134 - AluSx SINE Alu -1 311 1 1073 107 0 0 chrX 8031047 8031178 -168942962 + AluSq/x SINE Alu 1 131 -181 1857 178 10 0 chrX 8031185 8031494 -168942646 + AluJo SINE Alu 1 312 0 320 328 121 23 chrX 8035774 8035948 -168938192 - MIR3 SINE MIR -13 195 5 719 151 227 54 chrX 8036008 8036193 -168937947 - MER20 DNA MER1_type -1 218 2 279 328 51 26 chrX 8037717 8037912 -168936228 + MIR SINE MIR 13 212 -50 918 182 4 2 chrX 8038585 8038808 -168935332 + (TGGG)n Simple_repeat Simple_repeat 2 223 -240 204 204 37 0 chrX 8038808 8038862 -168935278 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 918 182 4 2 chrX 8038862 8038874 -168935266 + (TGGG)n Simple_repeat Simple_repeat 223 463 0 262 258 11 67 chrX 8039135 8039224 -168934916 + L2 LINE L2 3230 3313 0 417 192 8 84 chrX 8039365 8039520 -168934620 + MIR SINE MIR 2 145 -67 322 278 0 14 chrX 8039841 8039913 -168934227 + Charlie1 DNA MER1_type 1 71 -2690 * 1008 261 52 6 chrX 8039911 8040148 -168933992 + Charlie1 DNA MER1_type 2343 2601 -160 2058 160 0 0 chrX 8040148 8040455 -168933685 - AluJb SINE Alu -5 307 1 1008 261 52 6 chrX 8040455 8040547 -168933593 + Charlie1 DNA MER1_type 2601 2687 -74 462 163 23 0 chrX 8040615 8040701 -168933439 + Charlie1 DNA MER1_type 2674 2761 0 2636 20 0 23 chrX 8040818 8041117 -168933023 + AluY SINE Alu 1 292 -19 274 339 56 17 chrX 8046110 8046290 -168927850 - MER117 DNA MER1_type -7 190 4 2298 90 0 75 chrX 8049703 8050037 -168924103 + AluSx SINE Alu 1 309 -3 2874 129 33 87 chrX 8050237 8050779 -168923361 + MLT2B2 LTR ERVL 3 515 0 369 259 45 9 chrX 8052069 8052181 -168921959 + L1MC4 LINE L1 6612 6727 -1315 312 287 264 39 chrX 8053261 8053571 -168920569 - L2 LINE L2 0 3313 2934 1936 192 123 9 chrX 8053575 8054022 -168920118 - MLT1D LTR MaLR 0 505 8 291 260 122 8 chrX 8054095 8054218 -168919922 - L2 LINE L2 -387 2927 2791 402 246 27 0 chrX 8054265 8054375 -168919765 - MER20 DNA MER1_type -3 216 104 2604 56 0 0 chrX 8056785 8057088 -168917052 + AluY SINE Alu 1 303 -8 1634 139 82 36 chrX 8057587 8057867 -168916273 - AluJo SINE Alu -19 293 1 183 221 110 110 chrX 8057960 8058096 -168916044 - L3b LINE CR1 -265 1318 1183 1723 222 156 29 chrX 8058301 8058827 -168915313 + MLT1E LTR MaLR 1 593 0 577 240 39 77 chrX 8059981 8060214 -168913926 + MER58A DNA MER1_type 1 224 0 1940 149 6 32 chrX 8061249 8061565 -168912575 - AluJo SINE Alu -4 308 1 539 220 10 0 chrX 8062174 8062274 -168911866 - MER5A DNA MER1_type -34 155 55 304 306 16 8 chrX 8062748 8062869 -168911271 + L1MC4a LINE L1 5780 5901 -1907 981 164 99 5 chrX 8063062 8063275 -168910865 + MLT1C LTR MaLR 1 233 -234 1926 151 14 0 chrX 8063283 8063567 -168910573 + AluJb SINE Alu 12 299 -13 763 93 14 72 chrX 8063567 8063706 -168910434 - MER2 DNA MER2_type -213 132 2 198 167 0 0 chrX 8063732 8063768 -168910372 + (TG)n Simple_repeat Simple_repeat 2 37 0 228 163 0 0 chrX 8064577 8064620 -168909520 + CT-rich Low_complexity Low_complexity 2 44 0 569 255 39 39 chrX 8064978 8065182 -168908958 + MIR SINE MIR 31 234 -28 270 290 42 3 chrX 8066536 8066635 -168907505 - MIR SINE MIR -58 150 43 725 280 109 18 chrX 8067893 8068232 -168905908 - L2 LINE L2 -31 3282 2913 2243 95 0 7 chrX 8068642 8068948 -168905192 + AluSx SINE Alu 1 304 -8 1127 250 5 24 chrX 8069264 8069448 -168904692 + L1ME LINE L1 5409 5592 -578 1268 155 8 76 chrX 8069448 8069699 -168904441 + MER46A DNA MER2_type 2 235 -1 1127 250 5 24 chrX 8069699 8069806 -168904334 + L1ME LINE L1 5592 5699 -471 888 200 49 42 chrX 8069891 8070176 -168903964 + L1MC5 LINE L1 7249 7535 -426 491 248 103 25 chrX 8070249 8070491 -168903649 + L1MC5 LINE L1 7664 7924 -37 2172 104 13 7 chrX 8072025 8072332 -168901808 + AluSx SINE Alu 1 309 -3 2133 106 3 0 chrX 8072715 8073016 -168901124 + AluSq SINE Alu 1 302 -11 1533 199 87 9 chrX 8073336 8073683 -168900457 + MLT1A2 LTR MaLR 1 374 0 340 191 44 15 chrX 8073947 8074015 -168900125 + MER3 DNA MER1_type 7 76 -133 624 216 9 0 chrX 8074016 8074132 -168900008 + MER20 DNA MER1_type 1 117 -102 1030 117 0 6 chrX 8074148 8074311 -168899829 - AluSg/x SINE Alu -1 311 150 1579 79 0 0 chrX 8074311 8074513 -168899627 - AluSx SINE Alu -110 202 1 458 214 45 0 chrX 8074609 8074721 -168899419 + MER3 DNA MER1_type 70 139 -70 338 291 64 35 chrX 8075389 8075561 -168898579 + MER5A DNA MER1_type 13 189 0 227 263 71 0 chrX 8076376 8076475 -168897665 + L1ME4a LINE L1 5973 6078 -43 2278 80 0 3 chrX 8077928 8078227 -168895913 + AluSc SINE Alu 1 298 -11 299 221 90 62 chrX 8078447 8078592 -168895548 + MLT1L LTR MaLR 465 613 -2 27 29 0 0 chrX 8078758 8078792 -168895348 + AT_rich Low_complexity Low_complexity 1 34 0 2027 119 3 3 chrX 8078893 8079188 -168894952 - AluSx SINE Alu -17 295 1 1961 157 0 0 chrX 8080460 8080772 -168893368 + AluJb SINE Alu 1 312 0 484 224 191 0 chrX 8081055 8081202 -168892938 + MER5B DNA MER1_type 1 175 -3 966 215 47 19 chrX 8081213 8081427 -168892713 - MER58A DNA MER1_type 0 224 5 215 267 33 0 chrX 8081432 8081492 -168892648 - L3 LINE CR1 -45 1532 1471 2060 87 11 0 chrX 8082119 8082438 -168891702 + AluSc SINE Alu 1 322 0 306 359 10 0 chrX 8082741 8082844 -168891296 + MIR SINE MIR 48 151 -111 847 157 0 15 chrX 8083973 8084107 -168890033 - FLAM_C SINE Alu -1 132 1 294 253 13 0 chrX 8084278 8084357 -168889783 + MER116 DNA Mariner 1 80 0 1615 183 88 21 chrX 8084475 8084489 -168889651 + L1M4 LINE L1 2711 2723 -3423 2153 89 0 26 chrX 8084489 8084793 -168889347 + AluSx SINE Alu 1 296 -16 1615 183 88 21 chrX 8084793 8085210 -168888930 + L1M4 LINE L1 2723 3171 -2975 430 225 0 50 chrX 8085250 8085370 -168888770 - MLT1J2 LTR MaLR -336 114 1 1648 219 83 23 chrX 8087140 8087574 -168886566 + MLT1D LTR MaLR 1 460 -45 1890 161 15 6 chrX 8088496 8088832 -168885308 - L1MB7 LINE L1 -19 6165 5827 2182 141 78 15 chrX 8088832 8089228 -168884912 + Tigger2a DNA MER2_type 2 422 -12 1528 150 7 29 chrX 8089228 8089501 -168884639 - L1MB7 LINE L1 -357 5827 5561 238 212 15 0 chrX 8089509 8089575 -168884565 + L1ME4a LINE L1 5711 5777 -344 329 305 65 0 chrX 8089837 8089991 -168884149 + L1ME4a LINE L1 5860 6023 -98 1718 128 0 110 chrX 8090724 8091052 -168883088 + AluJb SINE Alu 5 296 -6 361 278 93 20 chrX 8091656 8091807 -168882333 - Tigger8 DNA MER2_type -270 396 235 2105 115 0 3 chrX 8092694 8092999 -168881141 - AluSx SINE Alu -8 304 1 805 69 0 0 chrX 8093352 8093453 -168880687 + HY3 scRNA scRNA 1 101 0 1615 164 34 10 chrX 8093760 8094058 -168880082 - AluJo SINE Alu -7 305 1 193 182 23 23 chrX 8094068 8094112 -168880028 + MIR SINE MIR 182 225 -37 270 0 0 0 chrX 8096091 8096121 -168878019 + (TG)n Simple_repeat Simple_repeat 2 31 0 960 220 28 5 chrX 8096193 8096407 -168877733 + MER20 DNA MER1_type 1 219 0 342 0 0 0 chrX 8097448 8097486 -168876654 + (TG)n Simple_repeat Simple_repeat 2 39 0 305 113 38 0 chrX 8097487 8097540 -168876600 - L1MB3 LINE L1 -16 6167 6113 1791 194 22 20 chrX 8097540 8097928 -168876212 - L1MB5 LINE L1 -9 6165 5762 445 299 128 6 chrX 8099793 8099957 -168874183 - L2 LINE L2 -3 3310 3127 1357 209 26 7 chrX 8100972 8101279 -168872861 - L1M4 LINE L1 -2449 3697 3385 875 259 49 0 chrX 8101286 8101491 -168872649 - MER58A DNA MER1_type -5 219 5 427 279 101 6 chrX 8101495 8101674 -168872466 - L1M4 LINE L1 -2756 3390 3195 507 303 155 4 chrX 8101684 8101935 -168872205 + MLT1J2 LTR MaLR 151 439 -11 227 259 17 0 chrX 8102980 8103038 -168871102 + MIR SINE MIR 72 130 -132 1083 202 80 10 chrX 8103502 8103804 -168870336 - MER33 DNA MER1_type 0 324 2 198 0 0 0 chrX 8104150 8104172 -168869968 + (CAGCC)n Simple_repeat Simple_repeat 4 25 0 468 266 70 6 chrX 8104982 8105153 -168868987 + L1ME1 LINE L1 5963 6161 -5 21 36 0 0 chrX 8105542 8105570 -168868570 + AT_rich Low_complexity Low_complexity 1 28 0 249 307 189 16 chrX 8105833 8105960 -168868180 - MIR SINE MIR -72 190 42 189 0 0 0 chrX 8106737 8106758 -168867382 + (CAA)n Simple_repeat Simple_repeat 2 22 0 2190 107 0 0 chrX 8107986 8108284 -168865856 + AluSq SINE Alu 1 298 -15 222 246 0 0 chrX 8109786 8109900 -168864240 + (TGGA)n Simple_repeat Simple_repeat 2 115 0 2414 188 86 57 chrX 8109901 8110729 -168863411 + MLT1B-int LTR MaLR 591 1735 0 580 220 112 25 chrX 8110729 8110915 -168863225 + MLT1B LTR MaLR 1 187 -187 614 217 35 25 chrX 8110954 8111157 -168862983 + MLT1B LTR MaLR 173 383 0 869 221 40 25 chrX 8111352 8111551 -168862589 + MER20 DNA MER1_type 1 202 -17 262 287 10 20 chrX 8111581 8111682 -168862458 + L1ME LINE L1 5679 5778 -343 1755 161 31 3 chrX 8111909 8112200 -168861940 + AluSx SINE Alu 3 301 -11 233 162 88 15 chrX 8112580 8112648 -168861492 + Charlie8 DNA MER1_type 82 154 -2263 645 123 85 0 chrX 8112649 8112755 -168861385 + FLAM_C SINE Alu 1 115 -18 396 241 60 9 chrX 8112783 8112899 -168861241 + Charlie8 DNA MER1_type 144 265 -2152 278 262 83 12 chrX 8113611 8113695 -168860445 - MER5B DNA MER1_type -87 91 2 2130 224 79 88 chrX 8113790 8114592 -168859548 + MER21B LTR ERV1 1 794 -69 206 118 0 0 chrX 8115176 8115210 -168858930 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 2739 39 0 0 chrX 8116431 8116738 -168857402 + AluY SINE Alu 2 308 -3 2420 144 21 88 chrX 8116804 8117127 -168857013 + L1MB5 LINE L1 5264 5530 -644 2605 64 0 0 chrX 8117127 8117438 -168856702 + AluY SINE Alu 1 311 0 2420 144 21 88 chrX 8117438 8117719 -168856421 + L1MB5 LINE L1 5530 5828 -346 1126 156 0 6 chrX 8117719 8117886 -168856254 + AluJb SINE Alu 134 299 -13 485 172 35 35 chrX 8117888 8118004 -168856136 + L1MB5 LINE L1 5821 5936 -242 991 130 6 150 chrX 8118171 8118426 -168855714 + L1MB5 LINE L1 5937 6159 -15 1464 112 10 10 chrX 8118432 8118637 -168855503 - AluSg/x SINE Alu -12 298 94 234 275 100 0 chrX 8118718 8118798 -168855342 + MER5B DNA MER1_type 89 176 -2 2025 127 3 3 chrX 8118849 8119133 -168855007 + AluSx SINE Alu 1 284 -28 187 51 0 51 chrX 8119133 8119172 -168854968 + (TA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chrX 8121589 8121614 -168852526 + AT_rich Low_complexity Low_complexity 1 25 0 2407 83 0 0 chrX 8121669 8121957 -168852183 - AluSx SINE Alu -24 288 1 282 266 228 27 chrX 8122244 8122507 -168851633 + L2 LINE L2 2560 2875 -439 422 167 23 68 chrX 8122870 8123002 -168851138 - MER20 DNA MER1_type -92 127 2 1981 120 60 0 chrX 8123434 8123718 -168850422 - AluJo SINE Alu -11 301 1 1552 183 63 7 chrX 8123963 8124263 -168849877 - MER7A DNA MER2_type 0 346 32 2545 66 0 3 chrX 8124300 8124602 -168849538 + AluSg SINE Alu 1 301 -9 853 194 25 0 chrX 8124622 8124782 -168849358 + MER58A DNA MER1_type 3 166 0 348 157 16 15 chrX 8124806 8124891 -168849249 + MER58B DNA MER1_type 112 326 -15 2004 136 26 16 chrX 8125126 8125435 -168848705 - AluJb SINE Alu 0 312 1 482 327 83 5 chrX 8125529 8125734 -168848406 - MIR SINE MIR -19 243 23 1214 110 5 19 chrX 8125776 8125985 -168848155 - MER6 DNA MER2_type -1 864 659 2217 135 0 0 chrX 8126441 8126745 -168847395 + AluSx SINE Alu 3 306 -6 1075 223 57 16 chrX 8126753 8127067 -168847073 - L1MB7 LINE L1 -10 6174 5848 615 151 155 87 chrX 8127631 8127850 -168846290 + L1MD3 LINE L1 7761 7994 -1 323 287 145 54 chrX 8128113 8128541 -168845599 - MLT1L LTR MaLR -6 609 143 * 850 164 28 23 chrX 8128536 8128713 -168845427 - MER20 DNA MER1_type -10 209 32 308 167 0 0 chrX 8128975 8129023 -168845117 - L2 LINE L2 -5 3308 3261 25 31 0 0 chrX 8129053 8129085 -168845055 + AT_rich Low_complexity Low_complexity 1 32 0 325 156 16 16 chrX 8129126 8129190 -168844950 - L1MD1 LINE L1 -12 6230 6167 992 187 84 0 chrX 8129190 8129377 -168844763 + L1MB7 LINE L1 5924 6133 -51 2323 107 0 10 chrX 8129377 8129686 -168844454 - AluSx SINE Alu -2 310 5 992 187 84 0 chrX 8129686 8129712 -168844428 + L1MB7 LINE L1 6133 6155 -29 228 111 0 0 chrX 8130316 8130352 -168843788 + (CA)n Simple_repeat Simple_repeat 1 36 0 655 229 37 55 chrX 8130693 8130911 -168843229 + MER20 DNA MER1_type 6 219 0 731 127 0 17 chrX 8130929 8131047 -168843093 + FRAM SINE Alu 56 171 -5 228 284 80 23 chrX 8131558 8131646 -168842494 + MIR SINE MIR 162 254 -8 277 122 0 0 chrX 8131723 8131764 -168842376 - MLT1D LTR MaLR -1 504 464 2730 124 62 11 chrX 8131767 8132217 -168841923 - MLT1D LTR MaLR -19 486 14 216 330 70 10 chrX 8132673 8132773 -168841367 + L2 LINE L2 3195 3300 -13 195 42 0 0 chrX 8132773 8132797 -168841343 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2113 100 7 41 chrX 8133350 8133668 -168840472 + AluSx SINE Alu 1 308 0 282 56 0 0 chrX 8134408 8134444 -168839696 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2001 146 0 31 chrX 8135355 8135677 -168838463 - AluJb SINE Alu 0 312 1 2305 104 10 0 chrX 8135789 8136086 -168838054 - AluSx SINE Alu -12 300 1 26 64 0 0 chrX 8138773 8138820 -168835320 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 8138841 8138862 -168835278 + GC_rich Low_complexity Low_complexity 1 21 0 30 83 0 0 chrX 8139023 8139095 -168835045 + GC_rich Low_complexity Low_complexity 1 72 0 241 216 29 20 chrX 8139141 8139243 -168834897 + (CCG)n Simple_repeat Simple_repeat 2 104 0 41 21 0 0 chrX 8139251 8139299 -168834841 + GC_rich Low_complexity Low_complexity 1 48 0 236 29 0 29 chrX 8139429 8139463 -168834677 + (CCG)n Simple_repeat Simple_repeat 2 34 0 310 278 14 47 chrX 8139644 8139873 -168834267 + C-rich Low_complexity Low_complexity 1 221 0 2418 58 20 3 chrX 8140824 8141118 -168833022 + AluSg SINE Alu 1 299 -11 1121 149 0 6 chrX 8141133 8141308 -168832832 + AluJb SINE Alu 137 310 -2 186 42 0 0 chrX 8142210 8142234 -168831906 - MIR SINE MIR -72 136 113 521 248 103 51 chrX 8142409 8142643 -168831497 + LTR16A1 LTR ERVL 212 457 0 212 284 37 46 chrX 8142658 8142767 -168831373 - MIR SINE MIR -42 220 113 336 24 0 0 chrX 8143102 8143143 -168830997 + (TC)n Simple_repeat Simple_repeat 2 42 0 336 48 0 0 chrX 8143144 8143186 -168830954 + (TG)n Simple_repeat Simple_repeat 1 42 0 957 180 37 32 chrX 8145012 8145229 -168828911 + MER20 DNA MER1_type 1 218 -1 1503 162 13 0 chrX 8145248 8145482 -168828658 - AluJb SINE Alu -14 298 62 189 333 19 56 chrX 8145503 8145611 -168828529 - MIR SINE MIR -111 151 48 261 0 0 0 chrX 8145681 8145710 -168828430 + (TC)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 8145709 8145731 -168828409 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 258 32 0 0 chrX 8145731 8145762 -168828378 + (GA)n Simple_repeat Simple_repeat 1 31 0 1662 206 49 62 chrX 8145770 8146240 -168827900 - MLT2B1 LTR ERVL -56 464 1 1965 174 0 0 chrX 8146282 8146592 -168827548 - AluJb SINE Alu -2 310 1 293 190 17 0 chrX 8146612 8146670 -168827470 + MER5A DNA MER1_type 9 67 -122 702 225 11 78 chrX 8147101 8147292 -168826848 - MER45A DNA AcHobo 0 178 1 1900 210 28 24 chrX 8147521 8147978 -168826162 + MLT1C LTR MaLR 7 465 -2 420 269 17 23 chrX 8148258 8148433 -168825707 + L1MC5 LINE L1 7074 7247 -714 245 68 91 23 chrX 8148439 8148483 -168825657 + MLT1A1 LTR MaLR 319 365 0 2290 74 11 3 chrX 8148517 8148801 -168825339 - AluSq SINE Alu -15 298 13 1041 139 69 56 chrX 8148867 8149083 -168825057 + MER20 DNA MER1_type 1 219 0 183 100 0 0 chrX 8150798 8150828 -168823312 + (TG)n Simple_repeat Simple_repeat 1 30 0 491 226 51 113 chrX 8151043 8151100 -168823040 + MER5A DNA MER1_type 7 66 -123 2595 66 0 0 chrX 8151100 8151401 -168822739 + AluSc SINE Alu 1 301 -8 491 226 51 113 chrX 8151401 8151538 -168822602 + MER5A DNA MER1_type 66 189 0 1717 201 26 0 chrX 8151668 8151971 -168822169 - AluJo SINE Alu -1 311 1 186 133 0 0 chrX 8151979 8152009 -168822131 + (TG)n Simple_repeat Simple_repeat 1 30 0 2153 92 3 14 chrX 8152009 8152292 -168821848 - AluSg1 SINE Alu -25 284 5 192 97 0 0 chrX 8152301 8152332 -168821808 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 2339 64 0 67 chrX 8152350 8152679 -168821461 - AluY SINE Alu -4 307 1 775 164 0 39 chrX 8152687 8152815 -168821325 - FLAM_A SINE Alu -10 123 1 677 223 67 36 chrX 8152964 8153157 -168820983 + L1ME LINE L1 5540 5738 -383 363 324 58 66 chrX 8153345 8153522 -168820618 + L1ME LINE L1 539 716 -5700 2306 86 0 0 chrX 8153522 8153813 -168820327 - AluSx SINE Alu -21 291 1 363 324 58 66 chrX 8153813 8154012 -168820128 + L1ME LINE L1 716 912 -5504 236 252 37 9 chrX 8154136 8154243 -168819897 + L1ME LINE L1 1407 1516 -4910 319 325 71 47 chrX 8154272 8154390 -168819750 + L1ME LINE L1 1735 1862 -4745 2301 115 0 10 chrX 8154390 8154702 -168819438 + AluSx SINE Alu 1 309 -3 319 325 71 47 chrX 8154702 8154795 -168819345 + L1ME LINE L1 1862 1951 -4656 442 316 94 38 chrX 8154809 8155075 -168819065 + L1ME LINE L1 4842 5122 -1304 2480 78 3 3 chrX 8155150 8155457 -168818683 + AluSc SINE Alu 1 307 -2 302 312 46 41 chrX 8155515 8155733 -168818407 + MLT1J2 LTR MaLR 3 221 -229 2295 118 0 0 chrX 8155910 8156216 -168817924 - AluSx SINE Alu -6 306 1 1854 158 0 0 chrX 8156365 8156678 -168817462 - AluJo SINE Alu 0 317 5 1482 194 10 0 chrX 8156728 8157032 -168817108 - L1MA9 LINE L1 -40 6272 5966 374 266 77 44 chrX 8157148 8157422 -168816718 - LTR40b LTR ERVL -1 461 179 258 252 47 28 chrX 8157758 8157865 -168816275 + LTR33 LTR ERVL 337 445 -76 1522 132 11 44 chrX 8157866 8158139 -168816001 + MER2 DNA MER2_type 2 265 -80 445 151 0 14 chrX 8158199 8158272 -168815868 + FLAM_A SINE Alu 42 113 -29 195 42 0 0 chrX 8158277 8158301 -168815839 + (CCA)n Simple_repeat Simple_repeat 3 26 0 281 257 0 0 chrX 8158335 8158405 -168815735 + MER2 DNA MER2_type 271 340 -5 244 271 0 14 chrX 8158409 8158479 -168815661 + LTR33 LTR ERVL 443 511 -10 390 281 72 29 chrX 8158485 8158624 -168815516 + L1ME LINE L1 5539 5683 -767 242 293 64 0 chrX 8158639 8158751 -168815389 + L1ME LINE L1 5757 5877 -747 253 285 86 7 chrX 8158876 8159027 -168815113 + L1ME LINE L1 6003 6165 -279 381 43 0 0 chrX 8159315 8159362 -168814778 + (TA)n Simple_repeat Simple_repeat 1 47 0 2243 86 0 4 chrX 8159370 8159650 -168814490 - AluSc SINE Alu -30 279 1 22 0 0 0 chrX 8159694 8159716 -168814424 + AT_rich Low_complexity Low_complexity 1 22 0 256 318 50 11 chrX 8159770 8159949 -168814191 + L1ME LINE L1 5713 5898 -223 2791 90 16 38 chrX 8159952 8160222 -168813918 + L1MA3 LINE L1 5870 6128 -177 2389 96 0 10 chrX 8160222 8160535 -168813605 + AluSg SINE Alu 1 310 0 2791 90 16 38 chrX 8160535 8160710 -168813430 + L1MA3 LINE L1 6128 6305 0 2622 43 0 7 chrX 8160765 8161064 -168813076 + AluY SINE Alu 1 297 -14 25 0 0 0 chrX 8161423 8161448 -168812692 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chrX 8162031 8162054 -168812086 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 706 162 148 0 chrX 8162084 8162226 -168811914 + Tigger1 DNA MER2_type 789 951 -1467 4186 134 83 11 chrX 8162625 8163372 -168810768 - Tigger1 DNA MER2_type -829 1589 789 2273 103 7 0 chrX 8163414 8163715 -168810425 - AluSx SINE Alu -9 303 1 24 0 0 0 chrX 8163721 8163745 -168810395 + AT_rich Low_complexity Low_complexity 1 24 0 333 191 143 12 chrX 8164135 8164219 -168809921 - L1ME4a LINE L1 -7 6114 6020 2411 96 3 3 chrX 8164456 8164769 -168809371 - AluSp SINE Alu 0 313 1 369 75 0 0 chrX 8164814 8164867 -168809273 + (CA)n Simple_repeat Simple_repeat 1 53 0 2969 136 9 25 chrX 8164867 8165058 -168809082 - Tigger1 DNA MER2_type -9 2409 2217 2069 122 7 10 chrX 8165058 8165354 -168808786 + AluJb SINE Alu 1 295 -17 2969 136 9 25 chrX 8165354 8165691 -168808449 - Tigger1 DNA MER2_type -201 2217 1889 986 100 7 0 chrX 8165828 8165968 -168808172 - Tigger1 DNA MER2_type -484 1934 1794 1282 153 127 19 chrX 8165968 8166236 -168807904 + AluJb SINE Alu 3 299 -13 1787 154 0 13 chrX 8166460 8166758 -168807382 - AluJo SINE Alu -18 294 1 239 273 0 15 chrX 8166907 8166973 -168807167 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 398 306 93 41 chrX 8167157 8167621 -168806519 - L1M4 LINE L1 -1542 4604 4117 1332 97 0 0 chrX 8167622 8167798 -168806342 + AluSg/x SINE Alu 135 310 -2 180 0 0 0 chrX 8168151 8168171 -168805969 + (TA)n Simple_repeat Simple_repeat 1 20 0 1874 177 9 0 chrX 8168172 8168500 -168805640 - L1MB7 LINE L1 -12 6172 5842 3282 164 13 0 chrX 8169323 8169877 -168804263 - L1MC1 LINE L1 -159 6174 5614 416 319 38 23 chrX 8169668 8169931 -168804209 - L1PB3 LINE L1 -329 5825 5559 * 2217 106 0 3 chrX 8170074 8170386 -168803754 + AluSx SINE Alu 1 311 -1 267 342 141 16 chrX 8171490 8171674 -168802466 - L2 LINE L2 -637 2677 2471 525 111 46 19 chrX 8171775 8171883 -168802257 + L1MA5A LINE L1 6021 6131 -166 665 184 22 15 chrX 8171883 8172019 -168802121 + FRAM SINE Alu 32 168 -8 1106 119 0 0 chrX 8172051 8172219 -168801921 + L1MA5A LINE L1 6130 6297 0 2382 73 0 0 chrX 8172251 8172554 -168801586 - AluY SINE Alu -8 303 1 1558 170 7 0 chrX 8172581 8172858 -168801282 + AluJb SINE Alu 1 279 -33 2178 94 74 12 chrX 8172858 8173197 -168800943 - LTR4 LTR ERV1 0 596 237 1326 122 173 0 chrX 8173518 8173755 -168800385 + AluJb SINE Alu 21 298 -14 363 228 87 11 chrX 8174085 8174177 -168799963 + MER5A DNA MER1_type 2 100 -89 2617 142 9 34 chrX 8174199 8174636 -168799504 + MSTB LTR MaLR 1 426 0 322 130 0 0 chrX 8175181 8175227 -168798913 + Alu SINE Alu 1 46 -254 1950 107 50 7 chrX 8175285 8175584 -168798556 - AluSx SINE Alu 0 312 1 504 277 0 0 chrX 8176089 8176226 -168797914 + L1ME LINE L1 5603 5739 -427 323 293 13 51 chrX 8176311 8176468 -168797672 + L1MC4a LINE L1 4509 4659 -1487 2414 154 75 97 chrX 8176554 8177113 -168797027 + MLT2B3 LTR ERVL 1 547 -7 2091 115 7 0 chrX 8177244 8177539 -168796601 + AluSx SINE Alu 10 306 -6 461 304 91 70 chrX 8177542 8177652 -168796488 + L1MC4a LINE L1 4967 5073 -1073 2113 139 14 17 chrX 8177652 8177923 -168796217 + MER2 DNA MER2_type 1 272 -72 1955 144 0 3 chrX 8177923 8178215 -168795925 - AluSx SINE Alu -17 295 5 2113 139 14 17 chrX 8178215 8178288 -168795852 + MER2 DNA MER2_type 272 344 0 461 304 91 70 chrX 8178288 8178549 -168795591 + L1MC4a LINE L1 5073 5346 -800 395 311 26 32 chrX 8178549 8178720 -168795420 + MLT1F1 LTR MaLR 1 166 -376 1119 183 17 38 chrX 8178720 8178960 -168795180 + AluJo SINE Alu 1 235 -77 1084 237 94 51 chrX 8178998 8179369 -168794771 + MLT1F1 LTR MaLR 179 565 -2 1626 221 102 63 chrX 8179392 8179440 -168794700 + L1MC4a LINE L1 5371 5416 -2392 840 155 16 0 chrX 8179440 8179569 -168794571 + FLAM_C SINE Alu 1 131 -2 1626 221 102 63 chrX 8179569 8180167 -168793973 + L1MC4a LINE L1 5416 6042 -1766 1935 123 7 26 chrX 8180418 8180720 -168793420 + AluSx SINE Alu 1 296 -16 525 274 82 29 chrX 8180722 8180930 -168793210 + L1MC4 LINE L1 6699 6917 -1125 930 128 64 0 chrX 8180933 8181105 -168793035 + L1MB7 LINE L1 6001 6183 -1 918 89 0 0 chrX 8181501 8181624 -168792516 + AluY SINE Alu 173 295 -16 2405 93 0 0 chrX 8181685 8181996 -168792144 + AluSx SINE Alu 1 311 -1 362 238 80 23 chrX 8182363 8182546 -168791594 + L1MC4 LINE L1 6829 7074 -796 720 165 0 9 chrX 8182583 8182698 -168791442 + FLAM_C SINE Alu 2 115 -28 21 36 0 0 chrX 8182710 8182738 -168791402 + AT_rich Low_complexity Low_complexity 1 28 0 394 256 27 94 chrX 8182749 8182807 -168791333 + L1MC5 LINE L1 7645 7705 -256 1933 87 79 4 chrX 8182807 8183084 -168791056 + AluSc SINE Alu 1 298 -11 394 256 27 94 chrX 8183084 8183248 -168790892 + L1MC5 LINE L1 7705 7852 -109 1495 153 19 0 chrX 8183321 8183582 -168790558 + AluJb SINE Alu 44 309 -3 257 235 0 106 chrX 8183650 8183735 -168790405 + L1MC5 LINE L1 7034 7109 -852 677 110 80 0 chrX 8183737 8183837 -168790303 - FLAM_A SINE Alu -15 127 20 1220 170 4 42 chrX 8183906 8184147 -168789993 + AluJo SINE Alu 37 268 -44 857 180 0 6 chrX 8184178 8184356 -168789784 + GA-rich Low_complexity Low_complexity 4 180 0 693 213 4 12 chrX 8184379 8184643 -168789497 + GA-rich Low_complexity Low_complexity 1 261 0 305 223 31 52 chrX 8184643 8184754 -168789386 + L1MC4 LINE L1 7063 7251 -637 244 223 96 71 chrX 8184797 8184937 -168789203 + L1MD3 LINE L1 7260 7587 -408 1622 183 10 3 chrX 8184996 8185297 -168788843 + AluJb SINE Alu 1 303 -9 2084 125 0 0 chrX 8185587 8185884 -168788256 + AluSx SINE Alu 1 297 -15 331 210 12 25 chrX 8185955 8186036 -168788104 + L1MC5 LINE L1 7836 7915 -46 1698 162 0 23 chrX 8186086 8186395 -168787745 - AluJo SINE Alu -10 302 1 588 309 24 24 chrX 8187523 8187814 -168786326 + L1ME LINE L1 5508 5798 -323 1971 229 24 2 chrX 8187834 8188293 -168785847 - L1MB7 LINE L1 -258 5926 5458 407 274 190 34 chrX 8188478 8188741 -168785399 - L1ME3A LINE L1 -15 6155 5852 448 167 0 0 chrX 8188854 8188926 -168785214 + FLAM SINE Alu 53 124 -19 2007 120 0 0 chrX 8189310 8189601 -168784539 + AluSx SINE Alu 1 291 -21 351 291 51 48 chrX 8189605 8189921 -168784219 + L1ME4a LINE L1 5588 5904 -217 531 173 4 12 chrX 8189965 8190212 -168783928 + (TG)n Simple_repeat Simple_repeat 1 245 0 827 96 20 14 chrX 8190413 8190559 -168783581 + (GGAA)n Simple_repeat Simple_repeat 1 147 0 1589 146 18 21 chrX 8190748 8191029 -168783111 - AluJo SINE Alu -30 282 3 309 259 190 0 chrX 8191029 8191145 -168782995 + Charlie4 DNA MER1_type 1812 1949 -12 293 215 0 31 chrX 8191147 8191212 -168782928 + LTR49 LTR ERV1 30 92 -503 707 199 7 7 chrX 8191212 8191348 -168782792 + LTR47A LTR ERVL 1 136 -316 1911 93 21 21 chrX 8191355 8191645 -168782495 - AluSx SINE Alu -22 290 1 2110 153 8 6 chrX 8191646 8192006 -168782134 + L1MB2 LINE L1 5467 5827 -344 1805 124 41 21 chrX 8192011 8192301 -168781839 + AluJo SINE Alu 3 298 -14 2062 108 3 20 chrX 8192303 8192609 -168781531 + AluSx SINE Alu 2 302 -10 2815 153 35 28 chrX 8192609 8193177 -168780963 + L1MB3 LINE L1 5611 6182 -1 2147 91 7 10 chrX 8193671 8193968 -168780172 - AluSq SINE Alu -17 296 1 1647 168 7 14 chrX 8194096 8194387 -168779753 - AluJo SINE Alu -18 294 6 508 203 0 14 chrX 8194965 8195103 -168779037 + GA-rich Low_complexity Low_complexity 4 139 0 1972 191 34 29 chrX 8195108 8195554 -168778586 + MLT1D LTR MaLR 58 505 0 1806 56 9 4 chrX 8195576 8195809 -168778331 - AluSq SINE Alu -10 303 70 447 263 105 12 chrX 8195920 8196091 -168778049 + HAL1 LINE L1 25 211 -2296 1708 138 3 49 chrX 8196419 8196744 -168777396 - AluJo SINE Alu 0 312 3 372 276 75 68 chrX 8196746 8196942 -168777198 - L1MDa LINE L1 -4026 2514 2321 243 0 0 0 chrX 8196942 8196969 -168777171 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1663 149 4 7 chrX 8196969 8197250 -168776890 - AluJo SINE Alu -32 280 1 372 276 75 68 chrX 8197250 8197360 -168776780 - L1MDa LINE L1 -4218 2322 2205 2102 73 52 0 chrX 8197439 8197725 -168776415 + AluSq SINE Alu 1 301 -12 1665 152 65 37 chrX 8197765 8198120 -168776020 + MLT1A1 LTR MaLR 1 365 0 2257 93 0 13 chrX 8198383 8198731 -168775409 + AluSg SINE Alu 1 310 0 1589 157 50 7 chrX 8199241 8199522 -168774618 + AluJo SINE Alu 1 293 -19 240 35 0 0 chrX 8199523 8199552 -168774588 + (CA)n Simple_repeat Simple_repeat 2 30 0 2426 97 129 5 chrX 8200325 8200706 -168773434 + MSTA LTR MaLR 1 428 0 9639 166 25 1 chrX 8200724 8202323 -168771817 + MSTA-int LTR MaLR 15 1651 0 2135 134 153 5 chrX 8202323 8202696 -168771444 + MSTA LTR MaLR 1 428 0 321 298 14 91 chrX 8202898 8203106 -168771034 - L1MC5 LINE L1 -44 7917 7726 1158 256 73 25 chrX 8203153 8203551 -168770589 - L1ME2 LINE L1 -31 6133 5717 2263 112 0 0 chrX 8203645 8203957 -168770183 + AluSx SINE Alu 1 312 0 1524 151 7 11 chrX 8204027 8204299 -168769841 + AluJo SINE Alu 3 273 -39 404 260 181 15 chrX 8204517 8204721 -168769419 - MIR SINE MIR -15 247 10 487 255 34 13 chrX 8204777 8204926 -168769214 + MLT1H LTR MaLR 25 176 -373 993 217 5 0 chrX 8206513 8206711 -168767429 - L1ME2 LINE L1 -747 5399 5201 1866 136 0 13 chrX 8209356 8209683 -168764457 + AluSx SINE Alu 1 312 0 1948 92 96 0 chrX 8210586 8210867 -168763273 - AluSx SINE Alu -4 308 1 876 240 5 0 chrX 8211040 8211232 -168762908 - L1MB3 LINE L1 -7 6176 5984 687 188 0 0 chrX 8211247 8211364 -168762776 - FAM SINE Alu -11 174 58 1322 149 5 0 chrX 8211511 8211747 -168762393 - AluJb SINE Alu 0 312 76 3402 157 52 96 chrX 8211747 8212541 -168761599 + MER21A LTR ERV1 154 912 -19 2546 39 0 3 chrX 8212770 8213077 -168761063 - AluY SINE Alu -5 306 1 2008 103 25 0 chrX 8214689 8214970 -168759170 + AluSx SINE Alu 3 290 -22 773 168 0 0 chrX 8215007 8215138 -168759002 + AluJb SINE Alu 182 312 0 1912 164 0 13 chrX 8216192 8216497 -168757643 - AluJo SINE Alu -11 301 1 23 0 0 0 chrX 8216497 8216520 -168757620 + AT_rich Low_complexity Low_complexity 1 23 0 545 215 161 16 chrX 8216600 8216786 -168757354 - MER20 DNA MER1_type -6 213 1 2198 109 0 45 chrX 8218355 8218666 -168755474 + AluSx SINE Alu 1 297 -15 681 173 0 0 chrX 8219288 8219398 -168754742 + FLAM_C SINE Alu 2 111 -32 293 0 0 26 chrX 8219418 8219456 -168754684 + (TAA)n Simple_repeat Simple_repeat 3 39 0 1831 108 68 0 chrX 8219694 8219943 -168754197 + AluSx SINE Alu 1 266 -46 309 239 0 0 chrX 8220193 8220260 -168753880 + MLT1A1 LTR MaLR 299 365 0 326 282 0 0 chrX 8220471 8220556 -168753584 + MER3 DNA MER1_type 1 85 -124 579 218 36 62 chrX 8220655 8220880 -168753260 - MER20 DNA MER1_type 0 219 1 1701 164 7 20 chrX 8220986 8221278 -168752862 - AluJb SINE Alu -24 288 1 200 119 0 24 chrX 8222829 8222871 -168751269 + (CA)n Simple_repeat Simple_repeat 2 42 0 1650 166 22 4 chrX 8223129 8223400 -168750740 - AluJo SINE Alu -36 276 1 874 93 0 0 chrX 8223400 8223507 -168750633 - AluSq/x SINE Alu -178 135 29 2384 91 0 0 chrX 8223724 8224034 -168750106 + AluSx SINE Alu 1 310 0 2019 136 33 0 chrX 8224230 8224532 -168749608 - AluJb SINE Alu 0 312 1 2645 74 8 0 chrX 8224674 8225025 -168749115 - THE1A LTR MaLR -1 354 1 424 301 23 11 chrX 8225753 8225929 -168748211 + (TG)n Simple_repeat Simple_repeat 2 179 0 291 217 40 0 chrX 8225983 8226135 -168748005 + (TG)n Simple_repeat Simple_repeat 1 158 0 256 293 30 0 chrX 8226146 8226245 -168747895 + (TG)n Simple_repeat Simple_repeat 1 102 0 2030 128 3 29 chrX 8227380 8227692 -168746448 - AluJb SINE Alu 0 312 9 3020 169 11 4 chrX 8227822 8228344 -168745796 - Tigger4(Zombi) DNA MER2_type 0 2731 2206 751 217 0 0 chrX 8228338 8228476 -168745664 - Tigger4(Zombi) DNA MER2_type -2593 138 1 * 1682 160 53 53 chrX 8229811 8230111 -168744029 + AluJo SINE Alu 1 300 -12 1852 169 7 0 chrX 8230113 8230409 -168743731 + AluJo SINE Alu 3 300 -12 358 261 0 0 chrX 8231787 8231875 -168742265 + MER58A DNA MER1_type 1 88 -19 228 243 108 0 chrX 8231875 8231949 -168742191 + L1MCc LINE L1 122 203 -6220 482 288 75 29 chrX 8232087 8232365 -168741775 + L1ME2 LINE L1 5741 6031 -133 1563 214 0 16 chrX 8232408 8232717 -168741423 + AluJo SINE Alu 1 304 -8 297 255 149 11 chrX 8232723 8232817 -168741323 + MLT1F1 LTR MaLR 24 130 -437 470 279 20 60 chrX 8232834 8233085 -168741055 + L1PA14 LINE L1 5683 5923 -238 * 2517 203 52 29 chrX 8232885 8233482 -168740658 + L1MA10 LINE L1 5722 6332 -2 1780 188 114 10 chrX 8233484 8233889 -168740251 + MLT1F1 LTR MaLR 121 567 0 2432 95 0 0 chrX 8235137 8235442 -168738698 + AluSc SINE Alu 1 305 -4 249 300 38 0 chrX 8235612 8235692 -168738448 + L2 LINE L2 3185 3267 -5 200 200 18 0 chrX 8235693 8235748 -168738392 + GA-rich Low_complexity Low_complexity 4 59 0 1145 192 64 91 chrX 8235820 8235988 -168738152 + MLT1A1 LTR MaLR 1 172 -193 1797 144 3 34 chrX 8235988 8236280 -168737860 + AluJo SINE Alu 12 294 -18 1145 192 64 91 chrX 8236280 8236486 -168737654 + MLT1A1 LTR MaLR 172 365 0 2273 94 0 14 chrX 8236944 8237264 -168736876 + AluSg SINE Alu 1 316 0 532 321 108 39 chrX 8237964 8238397 -168735743 + L1ME4a LINE L1 5289 5751 -370 362 274 191 15 chrX 8238446 8238650 -168735490 + L1ME4a LINE L1 5864 6103 -18 25 0 0 0 chrX 8239613 8239638 -168734502 + AT_rich Low_complexity Low_complexity 1 25 0 231 329 24 0 chrX 8239638 8239720 -168734420 - MIR3 SINE MIR -41 167 84 206 220 20 0 chrX 8240678 8240728 -168733412 + G-rich Low_complexity Low_complexity 3 53 0 477 0 0 0 chrX 8242515 8242568 -168731572 + (TG)n Simple_repeat Simple_repeat 2 54 0 405 0 0 0 chrX 8242614 8242659 -168731481 + (TG)n Simple_repeat Simple_repeat 2 46 0 1011 178 6 0 chrX 8242659 8242822 -168731318 - AluJo SINE Alu -27 285 122 184 362 101 11 chrX 8243426 8243614 -168730526 - MIR SINE MIR -38 224 20 916 102 0 16 chrX 8243783 8243911 -168730229 + FLAM_C SINE Alu 1 126 -17 2427 88 0 0 chrX 8243938 8244232 -168729908 - AluSx SINE Alu -18 294 1 801 136 0 0 chrX 8244233 8244343 -168729797 - AluJo/FLAM SINE Alu -202 110 1 2241 213 43 22 chrX 8244347 8244633 -168729507 - L1MC3 LINE L1 -16 7769 7491 1972 186 8 14 chrX 8244633 8244999 -168729141 + MLT1A1 LTR MaLR 2 365 0 2241 213 43 22 chrX 8244999 8245267 -168728873 - L1MC3 LINE L1 -294 7491 7203 234 219 25 101 chrX 8245273 8245392 -168728748 - MLT1F1 LTR MaLR -433 134 25 1507 168 76 52 chrX 8245395 8245764 -168728376 - L1MC3 LINE L1 -707 7078 6701 1834 130 52 0 chrX 8245775 8246092 -168728048 - AluJo SINE Alu 0 331 1 929 242 9 22 chrX 8246816 8247039 -168727101 - MER58A DNA MER1_type -4 220 1 418 289 35 0 chrX 8247807 8247921 -168726219 + MER58A DNA MER1_type 107 224 0 2395 72 30 7 chrX 8247949 8248254 -168725886 - AluSq SINE Alu -1 312 1 1217 174 54 8 chrX 8248322 8248581 -168725559 - L1MB7 LINE L1 -19 6165 5895 1484 158 60 34 chrX 8249617 8249882 -168724258 + AluJb SINE Alu 6 277 -35 868 170 0 0 chrX 8250394 8250529 -168723611 - AluJo SINE Alu -177 135 1 2061 148 3 6 chrX 8250922 8251233 -168722907 + AluJb SINE Alu 1 310 -2 320 389 56 5 chrX 8252124 8252322 -168721818 + L1 LINE L1 3622 3829 -2317 522 249 0 0 chrX 8252357 8252530 -168721610 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 203 298 0 0 chrX 8252531 8252578 -168721562 + (CCCA)n Simple_repeat Simple_repeat 1 47 0 755 178 0 6 chrX 8252580 8252760 -168721380 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 221 255 0 0 chrX 8252800 8252847 -168721293 + (TCCA)n Simple_repeat Simple_repeat 2 48 0 268 331 81 0 chrX 8252848 8252972 -168721168 - L2 LINE L2 -1 3271 3138 1940 177 21 23 chrX 8253409 8253793 -168720347 + MLT1B LTR MaLR 1 383 -7 1975 125 0 58 chrX 8255492 8255804 -168718336 - AluJb SINE Alu -17 295 2 859 233 159 4 chrX 8257066 8257324 -168716816 - AluJo SINE Alu 0 302 5 2404 86 7 7 chrX 8260793 8261097 -168713043 - AluSx SINE Alu -8 304 1 942 213 63 29 chrX 8261099 8261338 -168712802 + MER58B DNA MER1_type 74 320 -21 1661 154 0 84 chrX 8261338 8261671 -168712469 + AluJb SINE Alu 1 307 0 1915 153 29 13 chrX 8262482 8262789 -168711351 - AluJo SINE Alu 0 312 1 442 232 6 11 chrX 8262867 8263048 -168711092 + (CA)n Simple_repeat Simple_repeat 1 180 0 213 219 0 0 chrX 8263061 8263134 -168711006 + (CA)n Simple_repeat Simple_repeat 2 74 0 2320 124 0 0 chrX 8264375 8264682 -168709458 - AluSx SINE Alu -5 307 1 1805 176 0 0 chrX 8266023 8266313 -168707827 + AluJo SINE Alu 1 290 -22 623 235 19 25 chrX 8266729 8266891 -168707249 - MER3 DNA MER1_type -26 183 23 956 141 7 0 chrX 8267267 8267402 -168706738 - AluJo SINE Alu -176 136 1 2042 155 52 8 chrX 8267916 8268316 -168705824 + L1MB2 LINE L1 5748 6165 -6 1972 138 17 3 chrX 8268798 8269094 -168705046 - AluJo SINE Alu -12 300 1 25 0 0 0 chrX 8269683 8269708 -168704432 + AT_rich Low_complexity Low_complexity 1 25 0 945 135 0 0 chrX 8269713 8269839 -168704301 - FLAM_C SINE Alu -17 126 1 22 0 0 0 chrX 8270070 8270092 -168704048 + AT_rich Low_complexity Low_complexity 1 22 0 672 167 0 0 chrX 8270162 8270264 -168703876 + FRAM SINE Alu 62 163 -13 291 54 0 0 chrX 8270377 8270414 -168703726 + (A)n Simple_repeat Simple_repeat 1 37 0 318 259 95 43 chrX 8271182 8271298 -168702842 + MER5A DNA MER1_type 1 122 -67 2038 111 21 0 chrX 8275206 8275523 -168698617 + AluSx SINE Alu 1 323 0 1048 168 0 0 chrX 8275530 8275685 -168698455 + FAM SINE Alu 1 155 -30 204 200 0 0 chrX 8275687 8275732 -168698408 + CT-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chrX 8275738 8275766 -168698374 + AT_rich Low_complexity Low_complexity 1 28 0 868 163 88 0 chrX 8277812 8277959 -168696181 + FRAM SINE Alu 1 160 -6 333 211 40 47 chrX 8278202 8278342 -168695798 + L1MB8 LINE L1 5920 6061 -122 408 111 136 0 chrX 8278432 8278513 -168695627 + MER21A LTR ERV1 839 930 -1 198 271 153 76 chrX 8278686 8278830 -168695310 - L3 LINE CR1 -260 1317 1163 433 261 213 37 chrX 8278866 8279134 -168695006 + L1MB3 LINE L1 5330 5644 -2164 2055 146 0 31 chrX 8279656 8279978 -168694162 - AluJb SINE Alu 0 312 1 687 111 10 0 chrX 8280065 8280164 -168693976 + HY3 scRNA scRNA 1 100 -1 1862 187 63 0 chrX 8281477 8281873 -168692267 - L1MB7 LINE L1 -9 6175 5755 782 192 85 6 chrX 8281878 8282055 -168692085 - L1MB7 LINE L1 -524 5656 5466 2379 88 3 7 chrX 8282178 8282484 -168691656 - AluSg SINE Alu -5 305 1 482 236 192 33 chrX 8282574 8282756 -168691384 + MER58A DNA MER1_type 9 219 -5 1610 181 0 28 chrX 8284535 8284817 -168689323 - AluJb SINE Alu -24 288 15 2438 149 15 22 chrX 8285019 8285475 -168688665 + L1MB3 LINE L1 5728 6180 -3 2271 116 0 19 chrX 8285506 8285824 -168688316 + AluSx SINE Alu 1 312 0 1519 158 3 110 chrX 8285887 8286223 -168687917 + AluJb SINE Alu 1 300 -12 2302 117 0 0 chrX 8286223 8286560 -168687580 + AluSg SINE Alu 1 337 0 216 0 0 0 chrX 8288658 8288682 -168685458 + (A)n Simple_repeat Simple_repeat 1 24 0 2517 79 0 0 chrX 8288907 8289212 -168684928 + AluY SINE Alu 1 305 -6 1849 124 0 72 chrX 8289738 8289906 -168684234 - AluJo SINE Alu -14 298 120 242 0 61 0 chrX 8289906 8289939 -168684201 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2624 3 0 24 chrX 8289939 8290230 -168683910 - AluYa5 SINE Alu -27 284 1 1849 124 0 72 chrX 8290230 8290367 -168683773 - AluJo SINE Alu -190 122 14 744 182 23 8 chrX 8291007 8291139 -168683001 + FAM SINE Alu 32 165 -20 376 322 28 0 chrX 8291937 8292117 -168682023 + LTR41 LTR ERVL 3 187 -586 498 176 54 152 chrX 8292355 8292559 -168681581 + LTR41 LTR ERVL 503 686 -87 393 259 43 0 chrX 8292611 8292727 -168681413 - MER58B DNA MER1_type -1 340 220 236 204 0 0 chrX 8292781 8292825 -168681315 + LTR41 LTR ERVL 720 763 -10 1573 208 0 10 chrX 8293298 8293591 -168680549 + AluJo SINE Alu 2 291 -21 1592 213 74 12 chrX 8293598 8294002 -168680138 - L1MB2 LINE L1 -16 6155 5727 2339 107 0 0 chrX 8294043 8294334 -168679806 + AluSx SINE Alu 1 291 -21 278 271 25 42 chrX 8294373 8294491 -168679649 + L1ME LINE L1 5659 5774 -396 1145 174 19 19 chrX 8294509 8294722 -168679418 - MER20 DNA MER1_type -4 215 3 2217 100 0 4 chrX 8295555 8295835 -168678305 - AluSx SINE Alu -33 279 1 2377 89 0 10 chrX 8295945 8296247 -168677893 - AluSq SINE Alu -14 299 1 1979 132 0 35 chrX 8297082 8297400 -168676740 + AluJb SINE Alu 5 311 -1 22 0 0 0 chrX 8298718 8298740 -168675400 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chrX 8299195 8299220 -168674920 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1602 54 19 0 chrX 8299460 8299665 -168674475 - L1PA7 LINE L1 0 6154 5946 282 269 37 9 chrX 8300848 8300956 -168673184 + L1ME3A LINE L1 6046 6156 -14 1560 197 87 32 chrX 8300973 8301409 -168672731 + MLT1C LTR MaLR 1 460 -7 267 303 101 0 chrX 8301932 8302021 -168672119 + MIR3 SINE MIR 96 193 -15 287 203 16 0 chrX 8302138 8302202 -168671938 + L1MD1 LINE L1 6032 6096 -146 357 115 0 33 chrX 8302202 8302263 -168671877 + AluJ/FLAM SINE Alu 17 75 -227 684 188 106 69 chrX 8302934 8303017 -168671123 + L1MD1 LINE L1 6003 6081 -161 1819 135 3 53 chrX 8303017 8303320 -168670820 + AluJb SINE Alu 17 304 -8 684 188 106 69 chrX 8303320 8303454 -168670686 + L1MD1 LINE L1 6081 6228 -14 1754 186 0 0 chrX 8303458 8303748 -168670392 + AluJo SINE Alu 1 290 -22 1974 142 26 3 chrX 8303908 8304210 -168669930 - AluJb SINE Alu -3 309 1 237 319 75 43 chrX 8306063 8306157 -168667983 - MIR SINE MIR -90 118 22 2992 9 0 0 chrX 8306235 8306553 -168667587 - AluYb8 SINE Alu 0 318 1 1543 153 0 12 chrX 8308108 8308181 -168665959 + AluJo SINE Alu 63 135 -177 2314 104 0 3 chrX 8308181 8308489 -168665651 + AluY SINE Alu 1 307 -4 1543 153 0 12 chrX 8308489 8308664 -168665476 + AluJo SINE Alu 135 308 -4 885 237 17 58 chrX 8308672 8308967 -168665173 + L1ME3A LINE L1 5805 6087 -83 730 262 52 0 chrX 8309568 8309778 -168664362 + MER58A DNA MER1_type 2 222 -2 23 0 0 44 chrX 8309923 8309945 -168664195 + AT_rich Low_complexity Low_complexity 1 22 -21 2318 103 0 7 chrX 8309945 8310246 -168663894 - AluSq SINE Alu -14 299 1 1936 155 7 7 chrX 8310250 8310547 -168663593 - AluJb SINE Alu -15 297 1 23 0 0 44 chrX 8310547 8310564 -168663576 + AT_rich Low_complexity Low_complexity 25 43 0 1802 146 31 121 chrX 8310863 8311076 -168663064 + L1MC3 LINE L1 7310 7541 -454 1998 133 0 17 chrX 8311076 8311378 -168662762 + AluSx SINE Alu 1 297 -15 1802 146 31 121 chrX 8311378 8311679 -168662461 + L1MC3 LINE L1 7541 7995 0 257 204 0 0 chrX 8312420 8312464 -168661676 + AluJ/monomer SINE Alu 1 44 -259 25 0 0 0 chrX 8312469 8312494 -168661646 + AT_rich Low_complexity Low_complexity 1 25 0 1832 132 10 65 chrX 8312707 8313017 -168661123 - AluJo SINE Alu -19 293 1 2170 135 0 3 chrX 8313521 8313832 -168660308 + AluSq SINE Alu 1 310 -3 344 247 52 91 chrX 8313901 8314055 -168660085 - HAL1b LINE L1 -1 1347 1200 1706 153 62 7 chrX 8314208 8314496 -168659644 + AluJb SINE Alu 1 304 -8 568 301 25 20 chrX 8315038 8315295 -168658845 + L1ME1 LINE L1 5781 6001 -165 525 203 108 0 chrX 8315785 8315933 -168658207 - L1MB8 LINE L1 -115 6063 5900 2652 53 0 0 chrX 8316417 8316718 -168657422 + AluY SINE Alu 1 301 -10 1312 267 23 32 chrX 8317648 8318049 -168656091 + L1MB7 LINE L1 5747 6145 -39 800 181 0 0 chrX 8318049 8318182 -168655958 + AluJo SINE Alu 1 133 -169 1312 267 23 32 chrX 8318182 8318211 -168655929 + L1MB7 LINE L1 6145 6173 -11 246 154 31 15 chrX 8318227 8318292 -168655848 + GA-rich Low_complexity Low_complexity 1 66 0 182 341 35 0 chrX 8318489 8318574 -168655566 - MIR SINE MIR -116 146 59 807 145 105 23 chrX 8318877 8319049 -168655091 + AluJo SINE Alu 121 306 -6 304 303 81 10 chrX 8319977 8320076 -168654064 + AluJb SINE Alu 176 281 -21 201 39 0 0 chrX 8320124 8320150 -168653990 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 812 193 56 0 chrX 8320616 8320777 -168653363 - MER20 DNA MER1_type -48 171 2 362 269 59 25 chrX 8320963 8321082 -168653058 + MLT1K LTR MaLR 460 582 -6 414 0 0 0 chrX 8321127 8321173 -168652967 + (CA)n Simple_repeat Simple_repeat 1 46 0 640 194 148 46 chrX 8322773 8322794 -168651346 + MER20 DNA MER1_type 1 18 -201 1972 128 54 20 chrX 8322794 8323097 -168651043 + MLT1A1 LTR MaLR 1 319 -46 2507 74 3 0 chrX 8323097 8323396 -168650744 - AluSp SINE Alu -4 309 10 1972 128 54 20 chrX 8323396 8323445 -168650695 + MLT1A1 LTR MaLR 319 365 0 640 194 148 46 chrX 8323445 8323619 -168650521 + MER20 DNA MER1_type 18 216 -3 2423 62 0 10 chrX 8323900 8324191 -168649949 + AluSp SINE Alu 24 311 -2 307 221 0 0 chrX 8324465 8324533 -168649607 + L1MB3 LINE L1 5938 6005 -178 254 111 0 0 chrX 8324550 8324586 -168649554 + Alu SINE Alu 2 37 -266 530 213 16 8 chrX 8324593 8324715 -168649425 - MLT1A2 LTR MaLR -52 322 200 266 0 29 0 chrX 8324808 8324842 -168649298 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 2318 123 0 0 chrX 8325465 8325775 -168648365 + AluSx SINE Alu 3 312 0 1517 171 59 39 chrX 8326023 8326328 -168647812 + AluJo SINE Alu 1 311 -1 1822 155 52 14 chrX 8326437 8326786 -168647354 + THE1C LTR MaLR 1 362 -13 379 260 0 0 chrX 8326801 8326897 -168647243 - MER5A DNA MER1_type -93 96 1 1157 146 6 6 chrX 8327398 8327576 -168646564 + AluJb SINE Alu 135 312 0 261 306 89 6 chrX 8327612 8327769 -168646371 - MER5B DNA MER1_type -8 170 1 1905 165 0 13 chrX 8327989 8328305 -168645835 - AluJb SINE Alu 0 312 1 2212 111 0 16 chrX 8330328 8330643 -168643497 - AluSq SINE Alu -3 310 1 2078 135 20 0 chrX 8330750 8331046 -168643094 + AluJb SINE Alu 9 310 -2 2065 124 7 10 chrX 8381772 8382078 -168592062 + AluSx SINE Alu 1 305 -7 1958 253 68 39 chrX 8382138 8383023 -168591117 + L1MEc LINE L1 1345 2262 -4134 1083 144 20 10 chrX 8383023 8383218 -168590922 + L1PA13 LINE L1 5967 6163 0 1958 253 68 39 chrX 8383218 8383323 -168590817 + L1MEc LINE L1 2262 2363 -4033 214 147 59 15 chrX 8383339 8383407 -168590733 + (TA)n Simple_repeat Simple_repeat 1 71 0 225 273 0 0 chrX 8383424 8383468 -168590672 - MER2 DNA MER2_type 0 345 302 1655 122 0 0 chrX 8383479 8383709 -168590431 + AluJb SINE Alu 1 230 -82 28 61 0 0 chrX 8383739 8383788 -168590352 + AT_rich Low_complexity Low_complexity 1 49 0 1253 144 25 0 chrX 8383788 8383989 -168590151 - MER2 DNA MER2_type -139 206 1 532 182 153 86 chrX 8384954 8385163 -168588977 - MER58A DNA MER1_type 0 224 2 2404 103 0 3 chrX 8385508 8385820 -168588320 + AluSx SINE Alu 2 312 0 1030 188 28 5 chrX 8385951 8386164 -168587976 + MER20 DNA MER1_type 1 218 -1 206 346 63 31 chrX 8386472 8386599 -168587541 - MIR SINE MIR -113 149 19 2036 71 0 23 chrX 8388432 8388698 -168585442 - AluSg SINE Alu -50 260 1 180 0 0 0 chrX 8389852 8389872 -168584268 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 2052 132 0 0 chrX 8390649 8390950 -168583190 - AluJb SINE Alu 0 301 1 650 290 65 0 chrX 8391011 8391225 -168582915 - MER58 DNA MER1_type -113 228 1 2346 173 121 22 chrX 8391291 8391556 -168582584 + L1MB3 LINE L1 5570 5807 -376 2180 124 0 7 chrX 8391556 8391679 -168582461 + AluSx SINE Alu 4 126 -186 271 44 44 0 chrX 8391679 8391724 -168582416 + (CAAA)n Simple_repeat Simple_repeat 4 50 0 2180 124 0 7 chrX 8391724 8391899 -168582241 + AluSx SINE Alu 126 300 -12 2346 173 121 22 chrX 8391899 8392189 -168581951 + L1MB3 LINE L1 5807 6180 -3 237 292 164 33 chrX 8393633 8393962 -168580178 + L2 LINE L2 2851 3222 -91 2426 71 7 10 chrX 8395653 8395961 -168578179 - AluSx SINE Alu -5 307 1 757 181 46 69 chrX 8396251 8396467 -168577673 + MER20 DNA MER1_type 1 211 -8 217 236 194 14 chrX 8398312 8398384 -168575756 + L2 LINE L2 3218 3302 -11 280 275 42 28 chrX 8399559 8399701 -168574439 + MIR SINE MIR 41 184 -78 1812 174 24 0 chrX 8399775 8400069 -168574071 - AluJo SINE Alu -11 301 1 954 201 113 25 chrX 8400291 8400340 -168573800 - Charlie5 DNA MER1_type -9 2615 2572 2536 77 0 0 chrX 8400340 8400651 -168573489 - AluSx SINE Alu -1 311 1 954 201 113 25 chrX 8400651 8400920 -168573220 - Charlie5 DNA MER1_type -52 2572 2269 25 0 0 0 chrX 8400942 8400967 -168573173 + AT_rich Low_complexity Low_complexity 1 25 0 797 108 0 0 chrX 8401512 8401623 -168572517 - L1MA1 LINE L1 -4 6298 6188 571 191 0 37 chrX 8401686 8401822 -168572318 + Charlie5 DNA MER1_type 2391 2521 -91 364 228 51 57 chrX 8401828 8401986 -168572154 + Charlie5 DNA MER1_type 2466 2622 0 276 232 0 14 chrX 8404481 8404550 -168569590 + L1M LINE L1 5354 5421 -700 198 0 0 0 chrX 8404921 8404943 -168569197 + (CA)n Simple_repeat Simple_repeat 2 23 0 342 0 0 0 chrX 8404980 8405018 -168569122 + (CA)n Simple_repeat Simple_repeat 2 39 0 1013 236 100 14 chrX 8405973 8406253 -168567887 + L1MD3 LINE L1 7323 7626 -369 1431 150 85 68 chrX 8406254 8406524 -168567616 + AluJo SINE Alu 1 278 -34 180 0 0 0 chrX 8406524 8406544 -168567596 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1431 150 85 68 chrX 8406544 8406580 -168567560 + AluJo SINE Alu 278 312 0 195 343 20 20 chrX 8406958 8407060 -168567080 + MIR3 SINE MIR 104 205 -3 228 281 101 11 chrX 8407165 8407254 -168566886 + L2 LINE L2 3176 3272 0 1259 164 5 5 chrX 8407653 8407873 -168566267 - AluJo SINE Alu -7 305 86 948 181 80 38 chrX 8408202 8408440 -168565700 + MLT1F1 LTR MaLR 320 567 0 1423 213 113 19 chrX 8410254 8410677 -168563463 + MLT1C LTR MaLR 1 463 -4 180 111 0 0 chrX 8411987 8412014 -168562126 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1997 118 34 10 chrX 8412290 8412586 -168561554 - AluSx SINE Alu -9 303 1 2059 161 19 33 chrX 8413852 8414219 -168559921 + MLT1A1 LTR MaLR 3 364 -1 1888 190 69 35 chrX 8414947 8415111 -168559029 + MLT1C LTR MaLR 1 158 -309 2308 82 0 0 chrX 8415111 8415445 -168558695 + AluSx SINE Alu 1 334 0 1888 190 69 35 chrX 8415445 8415729 -168558411 + MLT1C LTR MaLR 158 467 0 1013 192 189 80 chrX 8416076 8416425 -168557715 - MLT1B LTR MaLR -3 387 1 491 206 56 0 chrX 8417660 8417767 -168556373 + MER20 DNA MER1_type 1 113 -106 828 130 32 87 chrX 8417769 8417954 -168556186 - MER20 DNA MER1_type -41 178 4 2193 82 0 0 chrX 8420926 8421235 -168552905 - AluSq SINE Alu 0 309 1 1494 191 69 29 chrX 8421516 8421893 -168552247 + L1MB4 LINE L1 5789 6180 0 21 36 0 0 chrX 8422871 8422899 -168551241 + AT_rich Low_complexity Low_complexity 1 28 0 1606 210 108 25 chrX 8423985 8424564 -168549576 - L1MD3 LINE L1 -5 7990 7267 762 223 22 33 chrX 8424974 8425158 -168548982 + MLT1C LTR MaLR 286 467 0 1312 175 64 46 chrX 8425339 8425452 -168548688 - MER96B DNA MER1_type? 0 417 308 2222 85 17 0 chrX 8425452 8425747 -168548393 + AluSx SINE Alu 1 300 -12 1312 175 64 46 chrX 8425747 8425959 -168548181 - MER96B DNA MER1_type? -109 308 86 1559 232 35 26 chrX 8425961 8426029 -168548111 + L1MB8 LINE L1 5720 5786 -392 1187 217 102 6 chrX 8426029 8426343 -168547797 + MER2 DNA MER2_type 1 344 0 1559 232 35 26 chrX 8426343 8426727 -168547413 + L1MB8 LINE L1 5786 6176 -2 354 261 0 0 chrX 8426736 8426824 -168547316 + MER96B DNA MER1_type? 325 412 -5 1723 156 7 3 chrX 8427435 8427724 -168546416 - AluJo SINE Alu -10 302 13 3516 171 30 24 chrX 8427736 8428407 -168545733 - L1MB2 LINE L1 -43 6128 5454 202 204 0 0 chrX 8428413 8428457 -168545683 - MIR SINE MIR -118 144 101 1061 248 148 9 chrX 8428458 8428797 -168545343 + MLT1B LTR MaLR 1 386 -4 309 286 238 0 chrX 8428895 8429000 -168545140 - MER5A DNA MER1_type -7 182 53 220 271 146 10 chrX 8429206 8429302 -168544838 + MER5C DNA MER1_type 212 320 -4 881 186 10 31 chrX 8429340 8429533 -168544607 - L1MB5 LINE L1 0 6174 5986 482 161 117 29 chrX 8429533 8429662 -168544478 - L1MB5 LINE L1 -228 5946 5803 561 312 115 23 chrX 8430052 8430488 -168543652 - L1MB5 LINE L1 -2069 5739 5264 221 288 128 24 chrX 8430590 8430715 -168543425 - MIR SINE MIR -11 251 114 723 197 165 101 chrX 8430928 8431321 -168542819 + MLT1C LTR MaLR 33 467 0 476 314 39 18 chrX 8431332 8431561 -168542579 + L1MC5 LINE L1 7692 7925 -36 743 142 112 18 chrX 8432694 8432863 -168541277 - MER20 DNA MER1_type -2 217 33 2352 132 64 58 chrX 8433273 8433742 -168540398 + MER4B LTR ERV1 1 472 -138 646 122 10 10 chrX 8433742 8433840 -168540300 + MER4A LTR ERV1 1 98 -566 1958 129 9 22 chrX 8433849 8434190 -168539950 + MER4A LTR ERV1 270 664 0 1232 77 0 0 chrX 8434209 8434365 -168539775 + MER4E LTR ERV1 611 766 0 741 180 0 0 chrX 8435990 8436118 -168538022 + FRAM SINE Alu 36 163 -13 820 177 96 53 chrX 8436676 8436885 -168537255 - MER20 DNA MER1_type 0 219 2 420 156 0 26 chrX 8437058 8437135 -168537005 - Charlie5 DNA MER1_type -2509 103 29 1928 148 0 3 chrX 8437331 8437635 -168536505 - AluJb SINE Alu -6 306 4 189 0 0 0 chrX 8437638 8437659 -168536481 + (T)n Simple_repeat Simple_repeat 1 21 0 1752 203 138 7 chrX 8438687 8439010 -168535130 + L1MB7 LINE L1 5666 6066 -118 1922 123 63 36 chrX 8439010 8439375 -168534765 + THE1C LTR MaLR 1 375 0 1752 203 138 7 chrX 8439375 8439499 -168534641 + L1MB7 LINE L1 6066 6172 -12 1472 145 76 46 chrX 8439870 8440173 -168533967 - AluJo SINE Alu 0 312 1 235 97 0 0 chrX 8441505 8441536 -168532604 + MLT1B LTR MaLR 358 388 -2 2667 150 2 9 chrX 8442344 8442797 -168531343 + L1MB3 LINE L1 5731 6180 -3 1163 197 10 0 chrX 8443115 8443323 -168530817 + MLT1B LTR MaLR 181 390 0 2463 64 0 0 chrX 8443378 8443689 -168530451 + AluY SINE Alu 1 311 0 806 149 113 0 chrX 8444678 8444819 -168529321 - FRAM SINE Alu -9 157 1 491 82 38 60 chrX 8444929 8445112 -168529028 + (CA)n Simple_repeat Simple_repeat 2 180 0 336 109 23 63 chrX 8445192 8445366 -168528774 + (CA)n Simple_repeat Simple_repeat 1 167 0 233 180 56 73 chrX 8445367 8445545 -168528595 + (CACAG)n Simple_repeat Simple_repeat 5 179 0 * 258 157 37 46 chrX 8445473 8445581 -168528559 + (CA)n Simple_repeat Simple_repeat 1 107 0 347 147 35 56 chrX 8445597 8445951 -168528189 + (CA)n Simple_repeat Simple_repeat 1 346 0 195 131 65 19 chrX 8445999 8446106 -168528034 + (CA)n Simple_repeat Simple_repeat 1 112 0 184 289 0 0 chrX 8446356 8446408 -168527732 - MIR SINE MIR -57 151 100 298 324 148 0 chrX 8447359 8447501 -168526639 + MIR3 SINE MIR 41 203 -5 1048 192 33 14 chrX 8448024 8448238 -168525902 + MER20 DNA MER1_type 2 219 0 1725 167 6 6 chrX 8448496 8448808 -168525332 - AluJb SINE Alu 0 312 1 536 293 72 71 chrX 8448810 8449061 -168525079 - HAL1 LINE L1 -160 2347 2098 2525 39 0 7 chrX 8449061 8449366 -168524774 - AluY SINE Alu -8 303 1 536 293 72 71 chrX 8449366 8449606 -168524534 - HAL1 LINE L1 -409 2098 1852 2250 84 0 3 chrX 8449606 8449903 -168524237 - AluSc SINE Alu -13 296 1 536 293 72 71 chrX 8449903 8450087 -168524053 - HAL1 LINE L1 -655 1852 1670 989 94 0 0 chrX 8450089 8450217 -168523923 - AluSq/x SINE Alu -184 128 1 506 261 86 37 chrX 8450218 8450463 -168523677 - HAL1 LINE L1 -868 1639 1383 916 180 115 6 chrX 8450600 8450783 -168523357 + MER3 DNA MER1_type 6 208 -1 477 226 0 20 chrX 8453307 8453409 -168520731 + MER20 DNA MER1_type 6 105 -114 265 359 68 13 chrX 8453948 8454182 -168519958 + MIR SINE MIR 7 253 -9 2116 117 3 0 chrX 8455812 8456119 -168518021 - AluSq SINE Alu -5 308 1 513 251 125 88 chrX 8457207 8457526 -168516614 + MLT1D LTR MaLR 2 332 -294 227 31 31 0 chrX 8457526 8457558 -168516582 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 772 195 5 70 chrX 8457567 8457681 -168516459 + MLT1D LTR MaLR 319 416 -89 1471 168 47 20 chrX 8457681 8457979 -168516161 - AluJo SINE Alu -6 306 1 772 195 5 70 chrX 8457979 8458064 -168516076 + MLT1D LTR MaLR 416 505 0 206 81 27 0 chrX 8458127 8458164 -168515976 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 1766 157 7 4 chrX 8458169 8458449 -168515691 - AluJo SINE Alu -31 281 1 3407 177 38 7 chrX 8458636 8458976 -168515164 + L1MB7 LINE L1 5481 5809 -375 1629 181 7 16 chrX 8458976 8459286 -168514854 + AluJo SINE Alu 1 307 -5 3407 177 38 7 chrX 8459286 8459628 -168514512 + L1MB7 LINE L1 5809 6184 0 21 0 0 0 chrX 8460151 8460172 -168513968 + AT_rich Low_complexity Low_complexity 1 21 0 1323 179 0 4 chrX 8460174 8460403 -168513737 + AluJb SINE Alu 1 228 -84 1363 236 133 33 chrX 8460853 8461190 -168512950 - MLT1D LTR MaLR -7 498 103 1777 164 0 3 chrX 8461190 8461495 -168512645 - AluJo SINE Alu -8 304 1 1363 236 133 33 chrX 8461495 8461610 -168512530 - MLT1D LTR MaLR -402 103 1 215 220 40 0 chrX 8463233 8463283 -168510857 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 1129 183 5 23 chrX 8463333 8463552 -168510588 - MER20 DNA MER1_type -4 215 1 228 226 28 94 chrX 8464591 8464697 -168509443 - MER41D LTR ERV1 -86 471 373 584 243 89 22 chrX 8464776 8465086 -168509054 - MER58 DNA MER1_type -2 2418 4 952 258 122 103 chrX 8465945 8466735 -168507405 + L1MC4a LINE L1 5971 6745 -1063 2127 128 0 0 chrX 8466735 8467041 -168507099 + AluSx SINE Alu 1 306 -6 952 258 122 103 chrX 8467041 8467237 -168506903 + L1MC4a LINE L1 6745 6983 -825 2763 13 0 0 chrX 8467237 8467548 -168506592 + AluY SINE Alu 1 311 0 952 258 122 103 chrX 8467548 8467663 -168506477 + L1MC4a LINE L1 6983 7094 -714 423 228 105 35 chrX 8467694 8467808 -168506332 - MER58B DNA MER1_type -29 312 191 2197 87 0 3 chrX 8467817 8468116 -168506024 - AluY SINE Alu -6 305 8 423 281 253 18 chrX 8468143 8468538 -168505602 + L1MC4 LINE L1 7192 7679 -363 1700 163 13 23 chrX 8468794 8469095 -168505045 - AluJo SINE Alu -14 298 1 1637 103 0 0 chrX 8469130 8469354 -168504786 + AluSg/x SINE Alu 83 306 -6 2100 114 0 10 chrX 8469489 8469796 -168504344 + AluSp SINE Alu 1 304 -9 200 256 0 0 chrX 8470867 8470906 -168503234 + G-rich Low_complexity Low_complexity 1 39 0 277 224 0 0 chrX 8472094 8472152 -168501988 + MER69 DNA AcHobo 509 566 -1960 243 88 0 0 chrX 8472397 8472431 -168501709 + (A)n Simple_repeat Simple_repeat 1 34 0 334 309 58 80 chrX 8474586 8474861 -168499279 - L2 LINE L2 -34 3238 2970 300 325 86 0 chrX 8474903 8475054 -168499086 - MIR SINE MIR -21 241 78 347 200 0 0 chrX 8476511 8476576 -168497564 - MER3 DNA MER1_type -5 204 140 2518 147 60 4 chrX 8476576 8477046 -168497094 + L1MB3 LINE L1 5688 6183 0 2119 102 0 3 chrX 8477805 8478099 -168496041 + AluSc SINE Alu 1 293 -16 191 221 78 52 chrX 8479302 8479379 -168494761 - MIR SINE MIR 0 262 184 733 230 83 5 chrX 8479380 8479597 -168494543 + L1MB1 LINE L1 5911 6144 -24 302 139 76 38 chrX 8479794 8479873 -168494267 + L1MB8 LINE L1 6097 6178 0 1301 161 51 0 chrX 8481198 8481434 -168492706 - L1MB7 LINE L1 -8 6176 5929 1720 181 50 11 chrX 8481440 8481799 -168492341 + MLT1B LTR MaLR 14 386 -4 1996 122 0 10 chrX 8482325 8482620 -168491520 + AluSx SINE Alu 7 298 -14 799 85 0 0 chrX 8482625 8482731 -168491409 - FLAM_C SINE Alu -36 107 2 456 35 0 0 chrX 8482942 8483000 -168491140 + (CA)n Simple_repeat Simple_repeat 2 59 0 251 93 23 0 chrX 8483096 8483139 -168491001 + (TCTCCC)n Simple_repeat Simple_repeat 6 49 0 1580 170 37 13 chrX 8484394 8484694 -168489446 - AluJo SINE Alu -5 307 1 605 256 0 19 chrX 8485037 8485197 -168488943 - MER58A DNA MER1_type -28 196 40 1436 155 0 45 chrX 8486014 8486270 -168487870 + L1MB3 LINE L1 5817 6052 -131 1398 158 88 32 chrX 8486270 8486554 -168487586 + AluJo SINE Alu 1 300 -2 1436 155 0 45 chrX 8486554 8486598 -168487542 + L1MB3 LINE L1 6052 6096 -87 458 242 224 19 chrX 8486598 8486759 -168487381 + MER58B DNA MER1_type 147 340 -1 245 238 48 24 chrX 8486780 8486864 -168487276 + L1M1 LINE L1 17 102 -7463 791 192 50 50 chrX 8487580 8487778 -168486362 + MER58B DNA MER1_type 140 337 -4 188 109 55 18 chrX 8488172 8488227 -168485913 + CT-rich Low_complexity Low_complexity 2 58 0 210 118 0 0 chrX 8488227 8488261 -168485879 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 219 86 29 chrX 8489247 8489352 -168484788 + L2 LINE L2 2555 2665 -649 1584 145 0 0 chrX 8489361 8489609 -168484531 + AluJo SINE Alu 59 306 -6 2290 190 45 28 chrX 8489628 8490087 -168484053 + L1MB2 LINE L1 5653 6123 -48 2421 81 0 0 chrX 8490087 8490394 -168483746 + AluSx SINE Alu 1 307 -5 2290 190 45 28 chrX 8490394 8490444 -168483696 + L1MB2 LINE L1 6123 6171 0 321 237 154 39 chrX 8490455 8490611 -168483529 + Charlie4 DNA MER1_type 1783 1956 -5 225 313 45 0 chrX 8490822 8490934 -168483206 + (GCGTG)n Simple_repeat Simple_repeat 4 120 0 1852 149 3 7 chrX 8492036 8492345 -168481795 + AluJo SINE Alu 1 308 -4 463 168 21 11 chrX 8492361 8492456 -168481684 - MER3 DNA MER1_type -49 160 65 897 230 4 57 chrX 8492572 8492820 -168481320 - MER8 DNA MER2_type -4 235 1 1698 175 0 19 chrX 8493237 8493545 -168480595 - AluJo SINE Alu -10 302 1 825 229 5 11 chrX 8494929 8495117 -168479023 + AluJo SINE Alu 121 307 -5 629 248 13 7 chrX 8496039 8496188 -168477952 - MER58B DNA MER1_type -18 323 174 1742 128 42 23 chrX 8496226 8496532 -168477608 - AluJo SINE Alu 0 312 1 789 180 101 37 chrX 8498330 8498547 -168475593 - L1MB8 LINE L1 0 6178 5948 364 246 48 97 chrX 8499555 8499783 -168474357 + L1MD2 LINE L1 6143 6359 0 1011 178 29 34 chrX 8500149 8500237 -168473903 - MER20 DNA MER1_type -11 208 121 2052 157 99 20 chrX 8500237 8500632 -168473508 + MSTB LTR MaLR 1 426 0 1011 178 29 34 chrX 8500632 8500751 -168473389 - MER20 DNA MER1_type -98 121 2 375 299 84 13 chrX 8500802 8500956 -168473184 - MIR SINE MIR -8 254 90 2082 87 33 3 chrX 8501556 8501856 -168472284 + AluSx SINE Alu 1 309 -3 231 129 0 0 chrX 8502173 8502204 -168471936 + AluJb SINE Alu 1 31 -277 1723 148 14 0 chrX 8502206 8502490 -168471650 + AluJb SINE Alu 11 298 -14 656 181 0 97 chrX 8503231 8503339 -168470801 - MER58B DNA MER1_type -2094 326 236 1995 138 44 99 chrX 8503339 8503775 -168470365 - MLT2D LTR ERVL -2 412 1 656 181 0 97 chrX 8503775 8503821 -168470319 - MER58B DNA MER1_type -2184 236 187 919 160 71 6 chrX 8504099 8504268 -168469872 - MER20 DNA MER1_type 0 219 40 1962 142 0 3 chrX 8504569 8504872 -168469268 + AluJb SINE Alu 1 302 -10 2044 57 89 14 chrX 8504969 8505249 -168468891 - AluY SINE Alu -10 301 1 23059 130 68 23 chrX 8505276 8511345 -168462795 - L1PA8A LINE L1 -21 6425 1 299 194 31 0 chrX 8511358 8511430 -168462710 - MLT1A2 LTR MaLR -65 363 257 378 239 37 45 chrX 8511430 8511564 -168462576 - MLT1A2 LTR MaLR -76 298 166 229 184 0 0 chrX 8511559 8511597 -168462543 - MSTD LTR MaLR -140 256 219 * 183 220 0 60 chrX 8511641 8511691 -168462449 - L2 LINE L2 -69 3244 3198 231 288 15 15 chrX 8511732 8511798 -168462342 + MIR SINE MIR 18 83 -179 1195 194 26 15 chrX 8512090 8512363 -168461777 - MER33 DNA MER1_type -47 277 2 345 231 66 11 chrX 8513117 8513208 -168460932 - MIR SINE MIR -161 101 6 953 223 14 18 chrX 8513324 8513544 -168460596 - MER20 DNA MER1_type 0 219 1 2189 101 0 3 chrX 8513742 8514040 -168460100 - AluSq SINE Alu -14 299 3 1878 144 26 7 chrX 8514046 8514352 -168459788 - AluJo SINE Alu 0 312 1 2217 100 0 7 chrX 8514360 8514661 -168459479 - AluSq SINE Alu -14 299 1 792 144 0 30 chrX 8516319 8516451 -168457689 + FLAM_C SINE Alu 1 128 -5 676 188 0 19 chrX 8516454 8516614 -168457526 + GA-rich Low_complexity Low_complexity 2 158 0 346 148 0 0 chrX 8516616 8516670 -168457470 - AluJ/FLAM SINE Alu -210 92 39 1943 148 0 0 chrX 8516923 8517228 -168456912 - AluJb SINE Alu -7 305 1 268 295 26 0 chrX 8517762 8517840 -168456300 + MER116 DNA Mariner 1 80 0 2250 226 127 3 chrX 8518317 8518898 -168455242 - MER82 DNA MER2_type 0 653 1 34 24 0 0 chrX 8519742 8519783 -168454357 + AT_rich Low_complexity Low_complexity 1 41 0 196 69 0 0 chrX 8520555 8520584 -168453556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1514 168 7 34 chrX 8520584 8520875 -168453265 - AluJb SINE Alu -1 311 1 540 0 0 0 chrX 8521456 8521516 -168452624 + (CA)n Simple_repeat Simple_repeat 2 61 0 1120 144 0 0 chrX 8522848 8523015 -168451125 + AluJb SINE Alu 135 301 -11 318 26 0 0 chrX 8523015 8523054 -168451086 + (TA)n Simple_repeat Simple_repeat 1 39 0 1801 149 0 13 chrX 8523077 8523379 -168450761 + AluJo SINE Alu 6 303 -9 214 229 0 21 chrX 8523769 8523817 -168450323 - MER5A DNA MER1_type -3 186 140 948 172 37 42 chrX 8523821 8524036 -168450104 - MER20 DNA MER1_type 0 219 6 1560 180 10 16 chrX 8524084 8524390 -168449750 + AluJo SINE Alu 1 304 -8 263 270 52 26 chrX 8524565 8524680 -168449460 + MLT1I LTR MaLR 57 174 -375 310 118 224 0 chrX 8524844 8524929 -168449211 + MLT1I LTR MaLR 281 384 -25 751 138 17 0 chrX 8525369 8525485 -168448655 + FLAM_C SINE Alu 1 118 -15 201 156 0 0 chrX 8525485 8525517 -168448623 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 2330 190 36 20 chrX 8525684 8526179 -168447961 + MLT1D LTR MaLR 1 503 -2 1549 188 63 12 chrX 8526886 8527221 -168446919 + L1MB7 LINE L1 5833 6184 0 2945 133 23 40 chrX 8527522 8527821 -168446319 - MER4B LTR ERV1 0 779 476 1650 187 20 0 chrX 8527821 8528115 -168446025 + AluJb SINE Alu 1 300 -12 2945 133 23 40 chrX 8528115 8528404 -168445736 - MER4B LTR ERV1 -303 476 31 26 0 0 0 chrX 8528430 8528456 -168445684 + AT_rich Low_complexity Low_complexity 1 26 0 623 179 4 197 chrX 8529091 8529260 -168444880 + MER5A DNA MER1_type 1 114 -75 1499 167 10 38 chrX 8529260 8529553 -168444587 - AluJo SINE Alu -25 287 3 623 179 4 197 chrX 8529553 8529617 -168444523 + MER5A DNA MER1_type 114 189 0 1323 238 49 46 chrX 8529620 8530048 -168444092 + L1ME1 LINE L1 5681 6091 -71 1575 121 111 35 chrX 8530048 8530337 -168443803 + AluJo SINE Alu 1 311 -1 1323 238 49 46 chrX 8530337 8530408 -168443732 + L1ME1 LINE L1 6091 6160 -2 567 222 58 48 chrX 8531178 8531350 -168442790 - MER20 DNA MER1_type 0 219 46 619 183 35 9 chrX 8531350 8531465 -168442675 - LTR8A LTR ERV1 0 727 610 615 104 26 70 chrX 8531475 8531590 -168442550 - LTR8A LTR ERV1 -617 110 1 691 243 24 18 chrX 8531593 8531762 -168442378 - MER4B-int LTR ERV1 -4 6259 6090 765 169 77 64 chrX 8531840 8532116 -168442024 - MER4B-int LTR ERV1 -105 6226 5914 7611 150 59 49 chrX 8532125 8533850 -168440290 - MER4B-int LTR ERV1 -529 5417 3805 7011 102 58 36 chrX 8533849 8534102 -168440038 - MER4B-int LTR ERV1 -1802 3078 2832 * 2128 84 3 14 chrX 8534102 8534389 -168439751 + AluSp SINE Alu 2 285 -28 243 0 0 0 chrX 8534389 8534416 -168439724 + (CA)n Simple_repeat Simple_repeat 2 28 0 7011 102 58 36 chrX 8534416 8534888 -168439252 - MER4B-int LTR ERV1 -2048 2832 2315 2053 85 41 0 chrX 8534888 8535178 -168438962 - AluSg SINE Alu 0 301 1 7011 102 58 36 chrX 8535178 8535584 -168438556 - MER4B-int LTR ERV1 -2565 2315 1919 1727 147 102 30 chrX 8535586 8535947 -168438193 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8536249 8536295 -168437845 - MIR SINE MIR -50 158 115 814 247 28 13 chrX 8536449 8536701 -168437439 + L1MB7 LINE L1 5926 6334 0 1897 100 40 27 chrX 8538809 8539136 -168435004 + AluSx SINE Alu 1 312 0 2170 100 0 0 chrX 8539181 8539481 -168434659 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 8540125 8540148 -168433992 + AT_rich Low_complexity Low_complexity 1 23 0 2177 86 17 0 chrX 8541428 8541718 -168432422 - AluY SINE Alu -16 295 1 1285 169 61 102 chrX 8541763 8542076 -168432064 + AluJo SINE Alu 1 300 -2 2036 126 3 0 chrX 8543421 8543722 -168430418 + AluSq SINE Alu 1 302 -11 1710 111 71 7 chrX 8543800 8544080 -168430060 + AluSx SINE Alu 1 298 -14 761 71 27 18 chrX 8544084 8544196 -168429944 + L1MA2 LINE L1 6135 6247 -57 960 229 73 89 chrX 8544364 8544735 -168429405 - MLT1J LTR MaLR 0 511 147 203 262 0 0 chrX 8544735 8544796 -168429344 + T-rich Low_complexity Low_complexity 1 61 0 2042 113 0 0 chrX 8544825 8545107 -168429033 - AluSq SINE Alu -31 282 1 286 315 35 14 chrX 8545107 8545250 -168428890 - MLT1J LTR MaLR -355 156 11 1985 105 54 0 chrX 8546855 8547149 -168426991 - AluSg SINE Alu 0 310 1 954 172 0 6 chrX 8547370 8547544 -168426596 - FRAM SINE Alu -4 172 1 1273 226 40 17 chrX 8547544 8547840 -168426300 - MLT1D LTR MaLR -202 303 1 1550 164 25 21 chrX 8547876 8548156 -168425984 + AluJo SINE Alu 2 282 -30 715 214 6 40 chrX 8548450 8548623 -168425517 - L1MB7 LINE L1 -16 6168 6002 575 122 41 10 chrX 8548631 8548729 -168425411 - L1MB7 LINE L1 -268 5916 5816 409 141 14 28 chrX 8549309 8549380 -168424760 - MLT1A1 LTR MaLR -1 364 295 2128 106 3 0 chrX 8549380 8549672 -168424468 + AluSx SINE Alu 1 293 -19 910 171 56 60 chrX 8549672 8549735 -168424405 + L1MB5 LINE L1 5612 5674 -500 1808 152 7 0 chrX 8549735 8550024 -168424116 + AluJo SINE Alu 1 291 -21 910 171 56 60 chrX 8550024 8550176 -168423964 + L1MB5 LINE L1 5674 5826 -348 1552 156 15 7 chrX 8550184 8550453 -168423687 + AluJb SINE Alu 8 278 -34 771 173 8 0 chrX 8550484 8550611 -168423529 + FLAM_C SINE Alu 5 132 -11 1134 157 10 5 chrX 8550616 8550813 -168423327 + L1MB5 LINE L1 5816 6013 -161 1697 120 70 94 chrX 8550817 8551257 -168422883 - THE1C LTR MaLR 0 375 1 901 160 0 0 chrX 8551261 8551411 -168422729 + L1MB5 LINE L1 6017 6166 -8 1076 206 14 14 chrX 8552337 8552546 -168421594 + MER58A DNA MER1_type 1 209 -15 200 182 0 0 chrX 8553032 8553065 -168421075 + CT-rich Low_complexity Low_complexity 5 37 0 261 0 0 0 chrX 8553204 8553233 -168420907 + (T)n Simple_repeat Simple_repeat 1 29 0 2157 87 0 13 chrX 8554973 8555272 -168418868 - AluSx SINE Alu -16 296 2 527 193 67 8 chrX 8555363 8555482 -168418658 + L1ME4a LINE L1 5962 6087 -34 2150 97 3 0 chrX 8555525 8555815 -168418325 - AluSq SINE Alu -17 296 6 1936 132 20 0 chrX 8555891 8556187 -168417953 - AluSx SINE Alu -10 302 1 768 132 6 93 chrX 8556196 8556378 -168417762 + L1MD3 LINE L1 7822 7987 -8 827 125 0 56 chrX 8556999 8557143 -168416997 - AluJb SINE Alu -5 307 172 2034 113 0 0 chrX 8557143 8557418 -168416722 - AluSx SINE Alu -37 275 1 1324 143 95 0 chrX 8557730 8557961 -168416179 + AluJo SINE Alu 35 287 -25 1903 136 3 23 chrX 8558330 8558638 -168415502 - AluJo SINE Alu -10 302 1 180 77 0 0 chrX 8558927 8558953 -168415187 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 892 152 7 0 chrX 8558960 8559098 -168415042 - FRAM SINE Alu -30 146 8 207 100 0 0 chrX 8559471 8559501 -168414639 + (A)n Simple_repeat Simple_repeat 1 30 0 191 242 19 25 chrX 8560139 8560296 -168413844 + CT-rich Low_complexity Low_complexity 2 157 0 194 128 26 0 chrX 8560355 8560394 -168413746 + (CCAA)n Simple_repeat Simple_repeat 2 41 0 766 212 35 6 chrX 8560826 8560996 -168413144 - MER20 DNA MER1_type -44 175 1 704 106 0 0 chrX 8561225 8561319 -168412821 + AluSq/x SINE Alu 41 134 -179 1889 128 6 3 chrX 8561319 8561631 -168412509 + AluSq SINE Alu 1 313 0 1454 176 49 14 chrX 8562231 8562515 -168411625 - AluJb SINE Alu -18 294 1 1625 199 92 0 chrX 8562522 8562893 -168411247 - L1MB7 LINE L1 0 6184 5780 1545 158 12 79 chrX 8562895 8563224 -168410916 - AluJo SINE Alu -5 307 1 270 326 39 31 chrX 8563229 8563358 -168410782 - L2 LINE L2 -2 3270 3141 719 167 0 16 chrX 8563654 8563780 -168410360 + FLAM_A SINE Alu 1 124 -9 2243 106 6 0 chrX 8566132 8566443 -168407697 - AluSq SINE Alu 0 313 1 2121 117 3 13 chrX 8567353 8567662 -168406478 - AluSx SINE Alu -6 306 1 1118 128 137 10 chrX 8568863 8569067 -168405073 - AluSx SINE Alu -19 293 64 2097 148 26 0 chrX 8570031 8570370 -168403770 - MER7A DNA MER2_type 0 346 1 1542 171 45 31 chrX 8571421 8571708 -168402432 - AluJo SINE Alu -21 291 1 806 269 138 18 chrX 8572004 8572395 -168401745 - L2 LINE L2 -17 3296 2859 1632 202 20 69 chrX 8572668 8573251 -168400889 - LTR27 LTR ERV1 0 969 1 225 0 0 0 chrX 8574237 8574262 -168399878 + (T)n Simple_repeat Simple_repeat 1 25 0 1496 190 15 0 chrX 8574891 8575160 -168398980 - Tigger3(Golem) DNA MER2_type -1 3028 2756 8044 109 47 6 chrX 8575415 8576657 -168397483 - HSMAR2 DNA Mariner -1 1301 9 859 265 75 69 chrX 8577050 8577586 -168396554 + LTR67 LTR ERVL 11 549 -8 222 309 161 7 chrX 8577882 8578031 -168396109 - L2 LINE L2 -1614 1700 1529 1949 168 3 0 chrX 8578170 8578474 -168395666 + AluSx SINE Alu 1 305 -7 1146 144 78 6 chrX 8578479 8578659 -168395481 - AluJb SINE Alu -31 281 89 27 62 0 0 chrX 8582944 8582992 -168391148 + AT_rich Low_complexity Low_complexity 1 48 0 192 77 0 0 chrX 8583139 8583165 -168390975 + (GA)n Simple_repeat Simple_repeat 2 27 0 379 241 12 0 chrX 8584084 8584167 -168389973 + MER58A DNA MER1_type 2 85 -22 407 187 18 10 chrX 8584577 8584598 -168389542 - MER20 DNA MER1_type -143 76 57 1766 198 15 0 chrX 8584598 8584941 -168389199 + MER7A DNA MER2_type 1 346 0 407 187 18 10 chrX 8584941 8585016 -168389124 - MER20 DNA MER1_type -162 57 3 864 291 128 10 chrX 8585484 8585897 -168388243 + LTR16B LTR ERVL 3 464 0 937 103 8 0 chrX 8586129 8586255 -168387885 + FLAM_C SINE Alu 1 127 -16 2327 108 0 3 chrX 8586515 8586821 -168387319 + AluSx SINE Alu 1 305 -7 2389 106 3 0 chrX 8587606 8587917 -168386223 + AluSx SINE Alu 1 312 0 1967 125 27 27 chrX 8588886 8589183 -168384957 - AluJo SINE Alu -15 297 1 825 160 0 0 chrX 8589362 8589493 -168384647 + FLAM_C SINE Alu 1 131 -2 2126 119 26 19 chrX 8589990 8590300 -168383840 - AluJb SINE Alu 0 312 1 1684 155 50 0 chrX 8591365 8591643 -168382497 - AluJb SINE Alu -20 292 1 629 291 70 80 chrX 8593625 8594054 -168380086 - L1M4c LINE L1 -4848 1798 1366 1674 147 134 31 chrX 8594054 8594441 -168379699 + MSTA LTR MaLR 2 428 0 629 291 70 80 chrX 8594441 8594499 -168379641 - L1M4c LINE L1 -5280 1366 1309 1370 170 129 15 chrX 8594499 8594770 -168379370 - AluJo SINE Alu 0 302 1 629 291 70 80 chrX 8594770 8594929 -168379211 - L1M4c LINE L1 -5337 1309 1134 1583 179 47 24 chrX 8595344 8595640 -168378500 - AluJo SINE Alu -9 303 1 291 211 0 0 chrX 8596918 8597013 -168377127 + CT-rich Low_complexity Low_complexity 5 99 0 615 252 7 0 chrX 8597472 8597615 -168376525 + MER82 DNA MER2_type 25 168 -485 1194 133 12 0 chrX 8597617 8597782 -168376358 - AluJo/FRAM SINE Alu -8 304 138 2018 147 0 19 chrX 8597782 8598089 -168376051 - AluJo SINE Alu -11 301 1 1140 99 14 94 chrX 8598561 8598774 -168375366 - MER30 DNA MER1_type -34 196 1 529 270 20 7 chrX 8598969 8599117 -168375023 - L1MD3 LINE L1 -14 7981 7832 807 274 91 13 chrX 8599132 8599439 -168374701 - L1MD2 LINE L1 -234 6125 5795 272 136 0 0 chrX 8600216 8600260 -168373880 + L1MB5 LINE L1 6019 6062 -112 2075 116 0 0 chrX 8600996 8601264 -168372876 + AluSx SINE Alu 35 302 -10 2384 219 44 4 chrX 8601408 8601948 -168372192 + MER68 LTR ERV1 1 562 0 1795 176 4 4 chrX 8602163 8602441 -168371699 - AluJo SINE Alu -34 278 1 1872 154 3 0 chrX 8602467 8602753 -168371387 - AluJo SINE Alu -25 287 1 180 0 0 0 chrX 8602784 8602804 -168371336 + (CAA)n Simple_repeat Simple_repeat 2 21 0 829 227 75 14 chrX 8602975 8603253 -168370887 - MER33 DNA MER1_type 0 324 30 911 62 86 0 chrX 8603269 8603397 -168370743 + MER85 DNA T2_type 1 139 0 416 277 50 37 chrX 8604484 8604654 -168369486 + MIR SINE MIR 32 204 -58 1134 175 9 31 chrX 8604956 8605179 -168368961 - MER58A DNA MER1_type 0 224 7 2087 82 56 0 chrX 8605244 8605551 -168368589 - AluSp SINE Alu 0 322 1 1364 121 5 33 chrX 8605606 8605857 -168368283 - AluSq SINE Alu 0 318 74 2295 108 0 0 chrX 8607535 8607832 -168366308 + AluSx SINE Alu 1 297 -15 2416 95 3 3 chrX 8608783 8609089 -168365051 - AluSx SINE Alu -6 306 1 1581 181 23 0 chrX 8609199 8609320 -168364820 + AluJo SINE Alu 2 119 -193 207 0 0 0 chrX 8609320 8609343 -168364797 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1581 181 23 0 chrX 8609343 8609480 -168364660 + AluJo SINE Alu 119 266 -46 466 211 26 26 chrX 8609495 8609609 -168364531 + MER58A DNA MER1_type 3 116 0 * 2036 178 27 5 chrX 8609608 8609984 -168364156 + MLT1B LTR MaLR 1 384 -6 457 248 46 0 chrX 8609990 8610099 -168364041 + MER58A DNA MER1_type 111 224 0 426 272 0 0 chrX 8611134 8611296 -168362844 + (CA)n Simple_repeat Simple_repeat 1 162 0 204 182 0 0 chrX 8612059 8612103 -168362037 + (CCG)n Simple_repeat Simple_repeat 3 46 0 843 228 20 18 chrX 8612543 8612765 -168361375 + MER20 DNA MER1_type 7 219 0 1753 185 3 3 chrX 8613534 8613826 -168360314 - AluJo SINE Alu -19 293 2 1966 121 49 39 chrX 8614223 8614530 -168359610 + AluJo SINE Alu 1 310 -2 898 174 0 0 chrX 8614807 8614945 -168359195 + AluJb SINE Alu 156 293 -19 1765 168 9 37 chrX 8615619 8615940 -168358200 - AluJb SINE Alu 0 312 1 220 352 101 25 chrX 8618759 8618918 -168355222 - MIR SINE MIR -75 187 17 275 282 111 0 chrX 8619657 8619801 -168354339 + MIR3 SINE MIR 4 160 -62 1763 196 37 0 chrX 8619988 8620340 -168353800 + MLT1A1 LTR MaLR 1 365 0 842 167 48 12 chrX 8620834 8621002 -168353138 - MER20 DNA MER1_type 0 219 46 1178 227 0 0 chrX 8621772 8621992 -168352148 + MER58A DNA MER1_type 1 220 -4 338 263 0 0 chrX 8622004 8622080 -168352060 - MER2 DNA MER2_type 0 345 270 256 333 0 0 chrX 8622330 8622408 -168351732 + MIR3 SINE MIR 119 196 -12 319 230 82 59 chrX 8622442 8622577 -168351563 - MER74B LTR ERVL -13 609 472 2380 89 0 22 chrX 8624327 8624641 -168349499 - AluSq SINE Alu -6 307 1 1636 187 21 3 chrX 8625365 8625538 -168348602 + AluJb SINE Alu 3 184 -128 216 0 0 0 chrX 8625538 8625562 -168348578 + (G)n Simple_repeat Simple_repeat 1 24 0 1636 187 21 3 chrX 8625562 8625677 -168348463 + AluJb SINE Alu 184 296 -16 1700 174 0 14 chrX 8625679 8625966 -168348174 + AluJb SINE Alu 1 283 -29 486 143 0 0 chrX 8625999 8626076 -168348064 + MER83B LTR ERV1 226 302 -76 21 0 0 0 chrX 8626078 8626099 -168348041 + AT_rich Low_complexity Low_complexity 1 21 0 2116 111 7 10 chrX 8626173 8626461 -168347679 - AluSx SINE Alu -25 287 1 329 234 0 0 chrX 8626468 8626532 -168347608 + MER2 DNA MER2_type 282 345 0 207 204 0 0 chrX 8626563 8626617 -168347523 + (TA)n Simple_repeat Simple_repeat 1 54 0 494 299 54 9 chrX 8626669 8626893 -168347247 + MIR SINE MIR 29 262 0 2129 108 78 9 chrX 8627060 8627394 -168346746 + MLT1A1 LTR MaLR 9 365 0 1481 186 43 25 chrX 8628833 8629156 -168344984 + MER77 LTR ERV1 277 605 0 2528 178 78 68 chrX 8629671 8630391 -168343749 - LTR8A LTR ERV1 0 727 1 1514 220 36 3 chrX 8630391 8630700 -168343440 - HUERS-P1 LTR ERV1 0 6263 5945 780 176 171 40 chrX 8630778 8630977 -168343163 - HUERS-P1 LTR ERV1 -57 6274 6050 12865 161 69 57 chrX 8631020 8632985 -168341155 - HUERS-P1 LTR ERV1 -341 6257 4316 1862 62 9 0 chrX 8632985 8633212 -168340928 - AluY SINE Alu -33 278 50 12865 161 69 57 chrX 8633212 8634703 -168339437 - HUERS-P1 LTR ERV1 -2282 4316 2011 450 0 0 0 chrX 8634703 8634753 -168339387 + (TA)n Simple_repeat Simple_repeat 1 50 0 12865 161 69 57 chrX 8634753 8634788 -168339352 - HUERS-P1 LTR ERV1 -4587 2011 1978 489 205 26 43 chrX 8634788 8634905 -168339235 - LTR8A LTR ERV1 -612 115 1 586 264 122 10 chrX 8635255 8635452 -168338688 + MER20 DNA MER1_type 1 219 0 862 285 62 53 chrX 8636222 8636455 -168337685 - L1MD2 LINE L1 -214 6145 5905 2271 116 0 6 chrX 8636455 8636766 -168337374 - AluSx SINE Alu -3 309 1 862 285 62 53 chrX 8636766 8636964 -168337176 - L1MD2 LINE L1 -454 5905 5710 305 115 0 0 chrX 8637221 8637273 -168336867 - L1MB3 LINE L1 -7 6176 6125 1353 166 8 36 chrX 8637279 8637532 -168336608 - AluJo SINE Alu -25 287 42 2147 174 10 17 chrX 8637532 8637947 -168336193 - L1MB3 LINE L1 -42 6141 5730 1673 147 90 4 chrX 8638705 8638971 -168335169 - AluJb SINE Alu -17 295 7 1200 151 31 5 chrX 8639096 8639406 -168334734 - MLT1A1 LTR MaLR 0 365 1 1816 235 26 22 chrX 8640543 8641041 -168333099 + L1ME1 LINE L1 5566 6065 -101 1671 122 3 107 chrX 8641116 8641443 -168332697 + AluJb SINE Alu 1 293 -19 2534 91 37 6 chrX 8641989 8642342 -168331798 - THE1B LTR MaLR 0 364 1 1216 229 93 34 chrX 8644645 8645086 -168329054 + MLT1C LTR MaLR 1 467 0 2392 69 0 0 chrX 8647068 8647358 -168326782 - AluSc SINE Alu -19 290 1 1753 170 26 7 chrX 8647362 8647668 -168326472 - AluJb SINE Alu 0 312 1 345 171 8 179 chrX 8647900 8648017 -168326123 + MLT1F LTR MaLR 55 163 -430 1257 203 32 7 chrX 8648064 8648345 -168325795 + MLT1E1 LTR MaLR 367 654 0 1975 125 6 55 chrX 8648898 8649226 -168324914 + AluJb SINE Alu 1 312 0 300 135 68 54 chrX 8649720 8649794 -168324346 - MIR3 SINE MIR -25 183 109 402 221 176 22 chrX 8649904 8650040 -168324100 - MER20 DNA MER1_type -62 157 1 1650 175 0 56 chrX 8650152 8650455 -168323685 + AluJo SINE Alu 1 286 -26 1608 136 4 0 chrX 8654909 8655144 -168318996 + AluJb SINE Alu 61 296 -16 2111 132 0 10 chrX 8655288 8655599 -168318541 + AluSx SINE Alu 5 312 0 1631 182 0 33 chrX 8656367 8656674 -168317466 - AluJb SINE Alu -15 297 1 808 187 91 5 chrX 8656906 8657104 -168317036 - MER20 DNA MER1_type 0 219 5 693 257 6 0 chrX 8657381 8657556 -168316584 + MER58B DNA MER1_type 163 338 -3 1270 161 96 45 chrX 8658189 8658524 -168315616 + L1MB7 LINE L1 5546 5897 -287 2050 110 11 14 chrX 8659312 8659633 -168314507 + AluSx SINE Alu 1 320 0 39 60 0 0 chrX 8660262 8660329 -168313811 + AT_rich Low_complexity Low_complexity 1 67 0 378 0 0 0 chrX 8663715 8663757 -168310383 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1641 204 105 15 chrX 8663765 8663829 -168310311 - L1MB5 LINE L1 -1 6179 6122 828 123 0 43 chrX 8663829 8663967 -168310173 - FLAM_C SINE Alu -1 132 1 1641 204 105 15 chrX 8663967 8664372 -168309768 - L1MB5 LINE L1 -58 6122 5689 466 145 13 0 chrX 8664956 8665032 -168309108 + MER20 DNA MER1_type 30 106 -113 415 265 88 6 chrX 8665109 8665290 -168308850 + MLT1F LTR MaLR 269 464 -78 895 119 0 0 chrX 8665591 8665709 -168308431 + FLAM_C SINE Alu 1 118 -25 222 281 0 24 chrX 8665721 8665803 -168308337 - MIR SINE MIR 0 262 183 21 0 0 0 chrX 8665803 8665824 -168308316 + AT_rich Low_complexity Low_complexity 1 21 0 216 362 34 0 chrX 8665900 8666049 -168308091 - MIR SINE MIR -94 168 15 2199 94 3 14 chrX 8717480 8717777 -168256363 + AluSp SINE Alu 1 294 -19 1386 244 90 5 chrX 8718212 8718614 -168255526 + L1MD3 LINE L1 7560 7995 0 1538 160 23 20 chrX 8718752 8719052 -168255088 + AluJo SINE Alu 1 301 -11 1712 166 3 3 chrX 8719322 8719623 -168254517 - AluJb SINE Alu -11 301 1 476 157 29 0 chrX 8719696 8719798 -168254342 + GA-rich Low_complexity Low_complexity 5 109 0 245 234 31 16 chrX 8719801 8719865 -168254275 + MLT2C1 LTR ERVL 2 66 -331 1842 219 13 44 chrX 8719871 8720345 -168253795 - MLT1C LTR MaLR -8 459 1 859 206 110 77 chrX 8720345 8720669 -168253471 + MLT2C1 LTR ERVL 60 394 -3 319 254 15 142 chrX 8720965 8721170 -168252970 + MIR SINE MIR 30 208 -54 2178 90 3 0 chrX 8721449 8721737 -168252403 - AluSq SINE Alu -24 289 1 509 120 0 0 chrX 8722219 8722294 -168251846 - U3 snRNA snRNA -130 87 13 2250 76 0 7 chrX 8723110 8723414 -168250726 - AluSc SINE Alu -7 302 1 1826 144 11 0 chrX 8724339 8724653 -168249487 + AluJb SINE Alu 1 317 0 2134 72 3 28 chrX 8724728 8724909 -168249231 - AluY SINE Alu 0 307 135 198 0 0 0 chrX 8724909 8724931 -168249209 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2134 72 3 28 chrX 8724931 8725063 -168249077 - AluY SINE Alu -172 135 1 207 180 120 0 chrX 8726137 8726187 -168247953 + L2 LINE L2 3257 3312 -1 1926 168 18 31 chrX 8726197 8726579 -168247561 + L1MB5 LINE L1 5798 6174 0 1033 106 0 0 chrX 8727391 8727523 -168246617 - AluSg/x SINE Alu -25 287 156 1077 243 130 18 chrX 8728622 8728695 -168245445 + MLT1E LTR MaLR 20 83 -510 2363 89 6 13 chrX 8728695 8729008 -168245132 - AluSx SINE Alu -1 311 1 1077 243 130 18 chrX 8729008 8729191 -168244949 + MLT1E LTR MaLR 83 244 -349 1773 185 0 30 chrX 8729191 8729493 -168244647 - AluJb SINE Alu -19 293 1 1077 243 130 18 chrX 8729493 8729704 -168244436 + MLT1E LTR MaLR 244 585 -8 2264 159 10 8 chrX 8729705 8730094 -168244046 + MLT1B LTR MaLR 1 390 0 296 130 0 0 chrX 8731029 8731075 -168243065 + Alu SINE Alu 247 292 -10 343 206 65 0 chrX 8731381 8731473 -168242667 + MLT2B2 LTR ERVL 1 98 -417 280 335 97 0 chrX 8731495 8731650 -168242490 + MIR SINE MIR 80 249 -13 733 231 27 43 chrX 8731841 8731961 -168242179 - MER5A DNA MER1_type 0 189 72 2331 83 17 3 chrX 8731961 8732262 -168241878 - AluSx SINE Alu -7 305 1 733 231 27 43 chrX 8732262 8732327 -168241813 - MER5A DNA MER1_type -117 72 7 1927 85 114 14 chrX 8732367 8732648 -168241492 - AluSg SINE Alu 0 310 2 447 197 0 0 chrX 8733109 8733185 -168240955 + AluS SINE Alu 3 78 -234 324 276 9 19 chrX 8733193 8733298 -168240842 - MLT2B1 LTR ERVL -331 189 86 1652 136 70 86 chrX 8733300 8733602 -168240538 + AluJb SINE Alu 1 297 -15 2321 88 3 0 chrX 8733858 8734168 -168239972 + AluSp SINE Alu 1 311 0 1678 212 42 25 chrX 8734227 8734675 -168239465 + MLT2B1 LTR ERVL 1 456 -64 22 0 0 0 chrX 8734700 8734722 -168239418 + AT_rich Low_complexity Low_complexity 1 22 0 1264 228 141 9 chrX 8734723 8735222 -168238918 - MLT1E1 LTR MaLR -38 616 5 194 139 47 0 chrX 8735705 8735748 -168238392 + CT-rich Low_complexity Low_complexity 2 46 0 732 205 0 0 chrX 8735748 8735875 -168238265 - FRAM SINE Alu -46 130 4 660 209 209 0 chrX 8736081 8736234 -168237906 + MER5A DNA MER1_type 2 186 -3 1376 161 169 0 chrX 8736238 8736499 -168237641 - AluSx SINE Alu -7 305 1 5954 141 66 47 chrX 8736633 8737884 -168236256 - MER41-int LTR ERV1 -867 5079 3805 * 6659 104 58 36 chrX 8737883 8738136 -168236004 - MER41-int LTR ERV1 -1802 3078 2832 2211 94 3 14 chrX 8738136 8738423 -168235717 + AluSp SINE Alu 2 285 -28 423 0 0 0 chrX 8738423 8738470 -168235670 + (CA)n Simple_repeat Simple_repeat 2 48 0 6659 104 58 36 chrX 8738470 8738942 -168235198 - MER41-int LTR ERV1 -2048 2832 2315 2186 85 41 0 chrX 8738942 8739232 -168234908 - AluSg SINE Alu 0 301 1 6659 104 58 36 chrX 8739232 8739638 -168234502 - MER41-int LTR ERV1 -2565 2315 1919 1628 147 102 30 chrX 8739640 8740001 -168234139 - LTR8A LTR ERV1 -340 387 1 284 114 0 65 chrX 8740304 8740350 -168233790 - MIR SINE MIR -50 158 115 786 254 33 12 chrX 8740504 8740748 -168233392 + L1MB7 LINE L1 5926 6174 -10 2017 114 40 17 chrX 8742867 8743194 -168230946 + AluSx SINE Alu 1 312 0 2316 102 0 0 chrX 8743239 8743542 -168230598 + AluSx SINE Alu 1 303 -9 23 0 0 0 chrX 8744183 8744206 -168229934 + AT_rich Low_complexity Low_complexity 1 23 0 2346 85 17 0 chrX 8745483 8745776 -168228364 - AluY SINE Alu -13 298 1 1343 166 64 88 chrX 8745821 8746116 -168228024 + AluJo SINE Alu 1 288 -24 2188 126 3 0 chrX 8747469 8747770 -168226370 + AluSq SINE Alu 1 302 -11 1866 117 69 7 chrX 8747848 8748138 -168226002 + AluSx SINE Alu 1 308 -4 1042 87 37 6 chrX 8748138 8748293 -168225847 + L1MA2 LINE L1 6141 6300 -4 343 271 78 36 chrX 8748587 8748793 -168225347 + L1ME1 LINE L1 5960 6162 -4 2151 103 27 0 chrX 8748940 8749241 -168224899 + AluSx SINE Alu 1 309 -3 1314 169 4 30 chrX 8749294 8749525 -168224615 + AluJo SINE Alu 12 236 -76 183 100 0 0 chrX 8749639 8749669 -168224471 + (TA)n Simple_repeat Simple_repeat 1 30 0 271 266 73 32 chrX 8749670 8749804 -168224336 - MIR3 SINE MIR -54 154 22 286 155 14 113 chrX 8750009 8750080 -168224060 - MER20 DNA MER1_type -154 65 2 25 0 0 0 chrX 8753120 8753145 -168220995 + GC_rich Low_complexity Low_complexity 1 25 0 34 65 0 0 chrX 8753201 8753263 -168220877 + GC_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrX 8753324 8753348 -168220792 + GC_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chrX 8753395 8753420 -168220720 + (CGG)n Simple_repeat Simple_repeat 3 27 0 2390 74 13 10 chrX 8754622 8754933 -168219207 - AluSx SINE Alu 0 312 1 1478 218 69 21 chrX 8756260 8756678 -168217462 + L1MC2 LINE L1 4832 5269 -877 507 111 14 0 chrX 8756704 8756776 -168217364 + AluJ SINE Alu 213 285 -27 339 25 0 0 chrX 8756788 8756828 -168217312 + (TG)n Simple_repeat Simple_repeat 2 41 0 234 229 0 0 chrX 8756828 8756884 -168217256 + L1MC4 LINE L1 6654 6709 -1333 * 5235 168 31 28 chrX 8756866 8757942 -168216198 + L1MC2 LINE L1 5266 6344 0 1986 155 0 37 chrX 8757953 8758276 -168215864 + AluJo SINE Alu 2 312 0 2295 96 3 0 chrX 8758534 8758827 -168215313 - AluSx SINE Alu -18 294 1 2042 138 97 17 chrX 8759587 8759948 -168214192 + MLT1B LTR MaLR 1 390 0 2023 142 13 0 chrX 8760140 8760443 -168213697 + AluJb SINE Alu 1 307 -5 556 189 34 92 chrX 8760528 8760734 -168213406 - Charlie4a DNA MER1_type -71 437 244 1282 143 5 24 chrX 8760793 8760970 -168213170 - AluJb SINE Alu -2 310 131 396 40 0 0 chrX 8760970 8761020 -168213120 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2173 91 0 11 chrX 8761020 8761307 -168212833 - AluSx SINE Alu -28 284 1 1282 143 5 24 chrX 8761307 8761337 -168212803 - AluJb SINE Alu -179 133 106 464 146 10 10 chrX 8761346 8761449 -168212691 + MER96B DNA MER1_type? 69 171 -246 839 152 0 40 chrX 8761808 8761922 -168212218 - MLT1D LTR MaLR -4 501 393 1973 181 72 84 chrX 8761922 8762407 -168211733 + MLT2B1 LTR ERVL 2 482 -38 354 45 0 0 chrX 8762407 8762451 -168211689 + (TA)n Simple_repeat Simple_repeat 1 44 0 1973 181 72 84 chrX 8762451 8762490 -168211650 + MLT2B1 LTR ERVL 482 520 0 839 152 0 40 chrX 8762490 8762526 -168211614 - MLT1D LTR MaLR -112 393 357 1911 171 3 3 chrX 8762528 8762838 -168211302 + AluJo SINE Alu 1 310 -2 694 160 17 33 chrX 8762844 8763025 -168211115 + GA-rich Low_complexity Low_complexity 3 180 0 929 244 57 37 chrX 8763029 8763382 -168210758 - MLT1D LTR MaLR -145 360 1 1828 110 18 28 chrX 8763727 8764009 -168210131 + AluSx SINE Alu 21 299 -13 343 214 34 26 chrX 8764022 8764139 -168210001 - L1MA10 LINE L1 -7 6327 6210 2416 145 20 86 chrX 8764149 8764215 -168209925 - MLT1D LTR MaLR -1 504 435 615 197 354 36 chrX 8764215 8764318 -168209822 - AluJo SINE Alu -7 295 226 2390 99 0 6 chrX 8764318 8764632 -168209508 - AluSx SINE Alu 0 312 1 615 197 354 36 chrX 8764632 8764751 -168209389 - AluJo SINE Alu -76 226 2 2416 145 20 86 chrX 8764751 8764977 -168209163 - MLT1D LTR MaLR -70 435 260 1963 153 45 70 chrX 8764977 8765420 -168208720 + MSTB1 LTR MaLR 1 432 0 2416 145 20 86 chrX 8765420 8765664 -168208476 - MLT1D LTR MaLR -245 260 2 1884 223 35 68 chrX 8765665 8766270 -168207870 - L1ME1 LINE L1 -120 6046 5462 1664 197 14 0 chrX 8766321 8766605 -168207535 - AluJb SINE Alu -18 294 7 841 167 0 7 chrX 8766609 8766747 -168207393 - AluJo SINE Alu -175 137 1 512 190 51 118 chrX 8767416 8767611 -168206529 + L1M3 LINE L1 5449 5630 -550 300 140 0 0 chrX 8768346 8768396 -168205744 - 5S rRNA rRNA -70 51 2 253 200 0 0 chrX 8769390 8769440 -168204700 - 5S rRNA rRNA -70 51 2 277 180 0 0 chrX 8770321 8770371 -168203769 - 5S rRNA rRNA -70 51 2 289 180 0 0 chrX 8771253 8771303 -168202837 - 5S rRNA rRNA -70 51 2 268 200 0 0 chrX 8772183 8772233 -168201907 - 5S rRNA rRNA -70 51 2 300 140 0 0 chrX 8773115 8773165 -168200975 - 5S rRNA rRNA -70 51 2 284 198 0 172 chrX 8774093 8774209 -168199931 - 5S rRNA rRNA -24 97 2 309 180 0 0 chrX 8776079 8776129 -168198011 + 5S rRNA rRNA 2 51 -70 330 181 0 172 chrX 8777011 8777127 -168197013 + 5S rRNA rRNA 2 97 -24 321 160 0 0 chrX 8777942 8777992 -168196148 + 5S rRNA rRNA 2 51 -70 287 167 0 33 chrX 8779210 8779270 -168194870 - AluJo SINE Alu -159 143 86 1293 151 9 9 chrX 8779272 8779490 -168194650 - AluJo SINE Alu -94 218 1 2399 70 0 0 chrX 8779876 8780177 -168193963 - AluY SINE Alu -10 301 1 506 255 27 34 chrX 8781619 8781768 -168192372 + MIR SINE MIR 103 250 -12 232 292 0 14 chrX 8781882 8781954 -168192186 + GA-rich Low_complexity Low_complexity 1 71 0 836 168 0 7 chrX 8782112 8782255 -168191885 - FLAM_C SINE Alu 0 143 2 792 250 70 4 chrX 8782778 8783006 -168191134 + MER33 DNA MER1_type 35 277 -47 2508 51 0 3 chrX 8783014 8783326 -168190814 + AluY SINE Alu 1 311 0 1245 171 89 37 chrX 8783337 8783606 -168190534 + AluJb SINE Alu 1 283 -29 809 302 127 18 chrX 8783855 8784345 -168189795 + HAL1 LINE L1 1614 2156 -351 1656 189 3 0 chrX 8784349 8784646 -168189494 + AluJb SINE Alu 1 298 -14 1958 95 7 7 chrX 8784881 8785165 -168188975 + AluSq SINE Alu 19 302 -11 2227 64 3 32 chrX 8785238 8785550 -168188590 + AluY SINE Alu 1 303 -8 448 204 49 49 chrX 8786058 8786200 -168187940 - LTR33 LTR ERVL 0 521 380 436 226 13 0 chrX 8786268 8786360 -168187780 + MLT1I LTR MaLR 60 154 -266 2523 55 0 0 chrX 8786360 8786670 -168187470 - AluY SINE Alu -1 310 1 419 189 0 150 chrX 8787240 8787277 -168186863 + MER5B DNA MER1_type 30 71 -107 2172 77 14 7 chrX 8787277 8787574 -168186566 + AluSq SINE Alu 1 299 -14 419 189 0 150 chrX 8787574 8787663 -168186477 + MER5B DNA MER1_type 71 137 -41 1632 173 15 0 chrX 8787936 8788207 -168185933 + AluJo SINE Alu 1 275 -37 180 77 0 0 chrX 8788209 8788235 -168185905 + (TC)n Simple_repeat Simple_repeat 2 27 0 533 42 14 0 chrX 8788238 8788310 -168185830 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 27 0 0 0 chrX 8789683 8789710 -168184430 + AT_rich Low_complexity Low_complexity 1 27 0 358 307 48 96 chrX 8790294 8790697 -168183443 - L1MEc LINE L1 -2792 3423 2118 768 154 0 15 chrX 8790886 8791016 -168183124 + AluJo SINE Alu 12 139 -173 333 188 0 75 chrX 8791639 8791719 -168182421 - 5S rRNA rRNA -46 75 2 260 228 0 76 chrX 8792684 8792763 -168181377 - 5S rRNA rRNA -46 75 3 328 181 0 172 chrX 8793693 8793809 -168180331 - 5S rRNA rRNA -24 97 2 333 188 0 75 chrX 8794661 8794741 -168179399 - 5S rRNA rRNA -46 75 2 329 179 0 170 chrX 8795679 8795785 -168178355 - 5S rRNA rRNA -32 89 2 333 188 0 75 chrX 8796637 8796717 -168177423 - 5S rRNA rRNA -46 75 2 284 198 0 172 chrX 8797644 8797760 -168176380 - 5S rRNA rRNA -24 97 2 300 180 0 0 chrX 8798642 8798692 -168175448 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8799544 8799624 -168174516 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8800618 8800668 -168173472 - 5S rRNA rRNA -70 51 2 333 188 0 75 chrX 8801520 8801600 -168172540 - 5S rRNA rRNA -46 75 2 321 160 0 0 chrX 8802594 8802644 -168171496 - 5S rRNA rRNA -70 51 2 302 143 9 171 chrX 8803470 8803575 -168170565 - 5S rRNA rRNA -32 89 2 338 247 0 0 chrX 8803745 8803822 -168170318 - 5S rRNA rRNA -38 83 7 24 0 0 0 chrX 8805265 8805289 -168168851 + AT_rich Low_complexity Low_complexity 1 24 0 1709 141 3 50 chrX 8805289 8805457 -168168683 - 7SLRNA srpRNA srpRNA -16 304 130 360 0 0 0 chrX 8805457 8805497 -168168643 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1996 125 0 0 chrX 8805498 8805795 -168168345 - AluSq SINE Alu -11 302 6 1709 141 3 50 chrX 8805795 8805923 -168168217 - 7SLRNA srpRNA srpRNA -189 131 20 561 294 61 5 chrX 8806063 8806277 -168167863 - L1MC/D LINE L1 -2040 5768 5543 1804 165 3 0 chrX 8806581 8806890 -168167250 - AluJo SINE Alu -2 310 1 1992 115 0 0 chrX 8806907 8807186 -168166954 - AluSq SINE Alu -28 285 7 279 270 0 0 chrX 8807287 8807350 -168166790 - MLT1K LTR MaLR 0 588 526 814 313 23 32 chrX 8807457 8807802 -168166338 - MLT1L LTR MaLR -149 466 125 1173 181 191 61 chrX 8807983 8808391 -168165749 - MLT1C LTR MaLR -1 466 6 224 329 161 7 chrX 8808398 8808535 -168165605 - MIR SINE MIR -102 160 3 231 191 0 0 chrX 8808608 8808650 -168165490 - L2 LINE L2 -4 3309 3268 2326 82 3 3 chrX 8808654 8808960 -168165180 - AluY SINE Alu -3 308 3 261 109 0 0 chrX 8808961 8809007 -168165133 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 2195 87 0 0 chrX 8809007 8809295 -168164845 - AluSg1 SINE Alu -21 288 1 2347 35 3 0 chrX 8809617 8809924 -168164216 + AluY SINE Alu 1 308 0 1784 113 6 73 chrX 8810109 8810437 -168163703 + AluJo SINE Alu 1 306 -6 198 71 0 0 chrX 8810777 8810805 -168163335 + (TC)n Simple_repeat Simple_repeat 1 28 0 2346 213 82 53 chrX 8811050 8811467 -168162673 + L1MD2 LINE L1 5620 6068 -291 2199 75 0 0 chrX 8811467 8811747 -168162393 - AluSx SINE Alu -6 306 27 2346 213 82 53 chrX 8811747 8812046 -168162094 + L1MD2 LINE L1 6068 6357 -2 1987 114 3 10 chrX 8812135 8812433 -168161707 + AluSq SINE Alu 1 296 -17 1600 163 48 3 chrX 8812551 8812845 -168161295 + AluJb SINE Alu 1 307 -5 1858 145 3 13 chrX 8813518 8813821 -168160319 + AluJo SINE Alu 7 306 -6 1239 197 5 5 chrX 8813852 8814075 -168160065 + MER58A DNA MER1_type 2 224 0 1557 147 9 69 chrX 8814224 8814400 -168159740 - AluJo SINE Alu -12 300 150 2294 79 0 0 chrX 8814400 8814690 -168159450 - AluSx SINE Alu -22 290 1 1557 147 9 69 chrX 8814690 8814832 -168159308 - AluJo SINE Alu -162 150 1 271 343 133 14 chrX 8814921 8815131 -168159009 + MIR SINE MIR 2 236 -26 1014 159 0 0 chrX 8815478 8815641 -168158499 - AluJb SINE Alu -12 300 138 3051 188 46 2 chrX 8815810 8816416 -168157724 - L1MB5 LINE L1 -1 6173 5541 1671 177 81 0 chrX 8816553 8816863 -168157277 - MER7A DNA MER2_type 0 346 14 554 286 108 52 chrX 8816955 8817186 -168156954 + L2 LINE L2 3029 3272 0 631 130 0 0 chrX 8817497 8817589 -168156551 + AluJ/FLAM SINE Alu 1 92 -220 1997 248 72 19 chrX 8817706 8818355 -168155785 + L1ME2 LINE L1 5426 6109 -55 812 196 0 0 chrX 8818357 8818490 -168155650 - AluJb SINE Alu -178 134 2 26 0 0 49 chrX 8818540 8818555 -168155585 + AT_rich Low_complexity Low_complexity 1 15 -24 2246 107 0 0 chrX 8818555 8818864 -168155276 - AluSx SINE Alu -3 309 1 26 0 0 49 chrX 8818864 8818889 -168155251 + AT_rich Low_complexity Low_complexity 15 39 0 649 269 12 6 chrX 8818975 8819135 -168155005 - MLT1H LTR MaLR -3 546 386 1704 219 28 0 chrX 8820666 8821022 -168153118 - LTR16C LTR ERVL 0 491 126 286 293 13 0 chrX 8821238 8821313 -168152827 - MER45C DNA AcHobo 0 953 878 249 197 13 145 chrX 8821319 8821395 -168152745 - MER45C DNA AcHobo -441 512 447 1149 198 116 79 chrX 8821558 8821772 -168152368 - MER58B DNA MER1_type -2079 341 109 1802 141 3 14 chrX 8821772 8822063 -168152077 + AluJb SINE Alu 1 288 -24 1149 198 116 79 chrX 8822063 8822177 -168151963 - MER58B DNA MER1_type -2311 109 1 1118 254 58 96 chrX 8822667 8822829 -168151311 - MLT1J LTR MaLR -12 499 332 2492 35 0 6 chrX 8822829 8823141 -168150999 - AluY SINE Alu -1 310 1 1118 254 58 96 chrX 8823141 8823268 -168150872 - MLT1J LTR MaLR -179 332 202 1572 215 43 27 chrX 8823268 8823636 -168150504 + MLT1A2 LTR MaLR 1 374 0 1118 254 58 96 chrX 8823636 8823808 -168150332 - MLT1J LTR MaLR -309 202 55 962 204 9 23 chrX 8823808 8824028 -168150112 - MER20 DNA MER1_type -2 217 1 1118 254 58 96 chrX 8824028 8824063 -168150077 - MLT1J LTR MaLR -456 55 20 581 312 46 9 chrX 8824144 8824362 -168149778 + LTR67 LTR ERVL 332 557 0 2264 82 3 17 chrX 8825536 8825830 -168148310 - AluSc SINE Alu -14 295 6 412 233 338 0 chrX 8825844 8825977 -168148163 - MER5A DNA MER1_type -11 178 1 1514 160 23 105 chrX 8826135 8826479 -168147661 - AluYb8 SINE Alu -2 316 1 323 288 0 0 chrX 8826891 8826964 -168147176 + L2 LINE L2 3196 3268 -4 952 203 18 53 chrX 8827000 8827227 -168146913 + MER20 DNA MER1_type 1 219 0 350 253 38 0 chrX 8827976 8828055 -168146085 - MIR SINE MIR -33 229 148 348 313 54 27 chrX 8828545 8828707 -168145433 - MIR SINE MIR -38 170 1 1512 207 105 41 chrX 8828775 8828833 -168145307 + MLT1F LTR MaLR 1 54 -488 1588 198 58 33 chrX 8828833 8829197 -168144943 + MLT1A2 LTR MaLR 2 374 0 1512 207 105 41 chrX 8829197 8829622 -168144518 + MLT1F LTR MaLR 54 515 -27 6629 83 11 2 chrX 8829623 8830692 -168143448 + L1PA14 LINE L1 5079 6160 -1 2829 109 26 9 chrX 8830999 8831420 -168142720 + MSTA LTR MaLR 1 428 0 872 173 0 0 chrX 8831931 8832070 -168142070 - AluJo SINE Alu -173 139 1 182 321 58 29 chrX 8832858 8832995 -168141145 - MIR SINE MIR -48 214 74 1753 163 33 3 chrX 8833010 8833310 -168140830 + AluJb SINE Alu 1 309 -3 190 393 0 0 chrX 8833526 8833582 -168140558 + L2 LINE L2 2998 3053 -219 478 246 99 47 chrX 8833754 8833925 -168140215 - L1ME3 LINE L1 -14 6148 5969 195 401 39 6 chrX 8834434 8834616 -168139524 + L2 LINE L2 2827 3014 -258 22 0 0 0 chrX 8834843 8834865 -168139275 + AT_rich Low_complexity Low_complexity 1 22 0 1956 148 7 13 chrX 8835082 8835249 -168138891 - AluSx SINE Alu -11 301 135 2221 118 0 0 chrX 8835249 8835633 -168138507 - AluSx SINE Alu 0 312 1 1956 148 7 13 chrX 8835633 8835768 -168138372 - AluSx SINE Alu -177 135 1 896 167 0 7 chrX 8835771 8835915 -168138225 - FLAM_C SINE Alu 0 143 1 219 257 69 109 chrX 8835990 8836091 -168138049 + L2 LINE L2 3160 3256 -16 2168 132 3 3 chrX 8836118 8836428 -168137712 + AluSx SINE Alu 1 310 -2 900 237 23 5 chrX 8837813 8838028 -168136112 - MER20 DNA MER1_type 0 219 1 1676 165 4 0 chrX 8838545 8838818 -168135322 - AluJo SINE Alu -1 311 38 2751 182 72 30 chrX 8839233 8839832 -168134308 - MLT1E3 LTR MaLR 0 624 1 375 350 36 0 chrX 8839995 8840135 -168134005 - L2 LINE L2 -5 3308 3164 1721 149 7 18 chrX 8840138 8840419 -168133721 - AluJo SINE Alu -11 301 24 201 214 48 0 chrX 8840554 8840596 -168133544 + (CCTA)n Simple_repeat Simple_repeat 3 46 0 2455 150 55 9 chrX 8840720 8841172 -168132968 - LTR29 LTR ERV1 -13 609 137 309 274 0 0 chrX 8841185 8841269 -168132871 - MER34 LTR ERV1 -458 84 1 1224 268 61 65 chrX 8841738 8842057 -168132083 + L1MC4 LINE L1 7243 7562 -480 2572 173 19 8 chrX 8842057 8842537 -168131603 + L1MB3 LINE L1 5689 6173 -10 1813 164 7 23 chrX 8842539 8842849 -168131291 - AluJo SINE Alu -7 305 1 1224 268 61 65 chrX 8842849 8842940 -168131200 + L1MC4 LINE L1 7563 7653 -389 2225 120 0 0 chrX 8842940 8843239 -168130901 + AluSx SINE Alu 1 299 -13 1224 268 61 65 chrX 8843239 8843484 -168130656 + L1MC4 LINE L1 7653 7899 -143 2384 97 0 0 chrX 8843601 8843899 -168130241 - AluSx SINE Alu -14 298 1 2185 126 0 0 chrX 8844340 8844634 -168129506 + AluJo SINE Alu 1 294 -18 635 336 63 41 chrX 8844638 8845151 -168128989 + L2 LINE L2 2748 3270 -2 1567 148 31 68 chrX 8845440 8845764 -168128376 - AluJo SINE Alu 0 312 1 2072 145 93 25 chrX 8845788 8846187 -168127953 - MSTB LTR MaLR 0 426 1 2501 93 0 0 chrX 8846244 8846554 -168127586 - AluSx SINE Alu -2 310 1 1805 147 0 64 chrX 8846965 8847277 -168126863 - AluJb SINE Alu -12 300 9 899 148 0 37 chrX 8847421 8847583 -168126557 + MER20 DNA MER1_type 27 182 -37 1764 104 0 0 chrX 8847583 8847803 -168126337 + AluSg/x SINE Alu 66 285 -27 369 0 0 0 chrX 8847803 8847844 -168126296 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chrX 8848147 8848168 -168125972 + AT_rich Low_complexity Low_complexity 1 21 0 1157 134 23 14 chrX 8848649 8848865 -168125275 - MER46B DNA MER2_type 0 236 19 1812 165 0 14 chrX 8848878 8849169 -168124971 - AluJo SINE Alu -25 287 1 1063 172 0 0 chrX 8849169 8849349 -168124791 - MER46B DNA MER2_type -181 55 1 1018 194 0 0 chrX 8849351 8849521 -168124619 - FRAM SINE Alu -7 169 1 2321 118 0 0 chrX 8850249 8850553 -168123587 - AluJb SINE Alu -8 304 1 186 133 0 0 chrX 8850908 8850938 -168123202 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 325 301 44 0 chrX 8851207 8851343 -168122797 - L1ME3A LINE L1 -27 6143 6002 352 294 162 15 chrX 8851744 8851880 -168122260 - MIR SINE MIR -67 195 40 2317 241 14 11 chrX 8852131 8852687 -168121453 + MER82 DNA MER2_type 3 560 -93 2234 112 0 0 chrX 8853483 8853787 -168120353 - AluSx SINE Alu -8 304 1 2453 99 0 3 chrX 8853907 8854220 -168119920 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 8855058 8855086 -168119054 + AT_rich Low_complexity Low_complexity 1 28 0 2567 69 3 0 chrX 8855912 8856217 -168117923 + AluSp SINE Alu 1 306 -7 180 290 191 25 chrX 8856246 8856408 -168117732 - MER5A DNA MER1_type 0 189 1 563 226 161 6 chrX 8856985 8857153 -168116987 + MER45C DNA AcHobo 74 267 -686 * 828 215 126 64 chrX 8857134 8857329 -168116811 + MER45C DNA AcHobo 606 830 -751 939 207 0 0 chrX 8857329 8857493 -168116647 + FRAM SINE Alu 1 164 -2 828 215 126 64 chrX 8857493 8857623 -168116517 + MER45C DNA AcHobo 830 951 -2 1113 140 48 34 chrX 8858477 8858684 -168115456 + MER20 DNA MER1_type 1 210 -9 510 325 0 0 chrX 8858980 8859131 -168115009 + MER5B DNA MER1_type 26 176 -2 1198 131 0 22 chrX 8859488 8859671 -168114469 - AluJ SINE Alu 0 312 134 2086 124 3 16 chrX 8859671 8859978 -168114162 - AluSx SINE Alu -9 303 1 855 249 9 0 chrX 8860010 8860223 -168113917 - MER20 DNA MER1_type -4 215 1 470 256 29 70 chrX 8860225 8860467 -168113673 - MER112 DNA MER1_type 0 260 29 333 229 156 0 chrX 8860593 8860689 -168113451 - L1MCa LINE L1 -4336 2090 1980 2161 130 0 0 chrX 8860690 8860989 -168113151 - AluSx SINE Alu -12 300 2 748 186 0 8 chrX 8861336 8861465 -168112675 - AluJ SINE Alu -174 128 1 2175 176 55 31 chrX 8861513 8861663 -168112477 - L1MB7 LINE L1 -16 6168 6023 2002 164 3 0 chrX 8861663 8861974 -168112166 + AluJb SINE Alu 1 312 0 2175 176 55 31 chrX 8861974 8862333 -168111807 - L1MB7 LINE L1 -161 6023 5647 1918 111 48 24 chrX 8862755 8863044 -168111096 + AluSc SINE Alu 1 296 -13 2292 119 0 0 chrX 8863054 8863356 -168110784 + AluSx SINE Alu 1 302 -10 1007 151 0 0 chrX 8863608 8863754 -168110386 - AluJb SINE Alu 0 312 167 356 296 17 34 chrX 8864033 8864212 -168109928 + L1ME4a LINE L1 5754 5929 -192 29 28 0 0 chrX 8864967 8865003 -168109137 + GC_rich Low_complexity Low_complexity 1 36 0 270 81 0 0 chrX 8865092 8865129 -168109011 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 374 219 13 32 chrX 8865233 8865558 -168108582 + G-rich Low_complexity Low_complexity 1 318 0 224 261 14 14 chrX 8865529 8865667 -168108473 + GA-rich Low_complexity Low_complexity 4 141 0 * 1494 189 105 6 chrX 8866865 8867199 -168106941 - MLT1B LTR MaLR -1 389 23 2018 29 4 12 chrX 8868225 8868465 -168105675 - AluY SINE Alu -1 310 73 366 294 144 76 chrX 8868952 8869306 -168104834 + MLT1K LTR MaLR 136 513 -75 869 95 20 7 chrX 8869309 8869457 -168104683 + (TTTC)n Simple_repeat Simple_repeat 3 152 0 2355 88 13 0 chrX 8869555 8869860 -168104280 + AluSp SINE Alu 1 309 -4 189 0 0 0 chrX 8869873 8869894 -168104246 + (TA)n Simple_repeat Simple_repeat 1 21 0 384 288 65 7 chrX 8870189 8870342 -168103798 - L1ME3A LINE L1 -238 5932 5771 226 372 155 17 chrX 8870451 8870857 -168103283 + L2 LINE L2 1107 1568 -1746 313 319 22 44 chrX 8870980 8871115 -168103025 + L2 LINE L2 2596 2727 -587 1596 196 37 64 chrX 8871115 8871570 -168102570 - MLT1C LTR MaLR 0 467 25 234 307 26 44 chrX 8871580 8871694 -168102446 + L2 LINE L2 2712 2823 -491 611 91 0 0 chrX 8872490 8872578 -168101562 - L1MB4 LINE L1 0 6180 6093 2067 144 0 0 chrX 8872664 8872962 -168101178 + AluSx SINE Alu 1 298 -14 1037 171 12 0 chrX 8873011 8873175 -168100965 - AluJb SINE Alu -11 301 136 1927 180 0 0 chrX 8874338 8874643 -168099497 - AluSx SINE Alu -7 305 1 2288 131 0 0 chrX 8874918 8875230 -168098910 - AluSx SINE Alu 0 312 1 387 240 0 10 chrX 8875456 8875552 -168098588 + MER53 DNA DNA 23 117 -72 913 204 63 12 chrX 8875695 8875950 -168098190 + MER33 DNA MER1_type 57 324 0 652 246 138 0 chrX 8875949 8876144 -168097996 - MER58A DNA MER1_type -2 222 1 * 1015 170 0 0 chrX 8876536 8876701 -168097439 + FRAM SINE Alu 1 165 -1 842 157 0 0 chrX 8876868 8876989 -168097151 - FLAM_C SINE Alu -22 121 1 181 280 75 11 chrX 8877638 8877731 -168096409 - MIR SINE MIR 0 262 164 534 264 8 0 chrX 8878071 8878200 -168095940 + L1PB4 LINE L1 5951 6080 -76 468 270 137 63 chrX 8878549 8878711 -168095429 - L1MC4 LINE L1 -340 7702 7553 201 39 0 0 chrX 8878711 8878737 -168095403 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2007 125 4 0 chrX 8878737 8879016 -168095124 - AluJb SINE Alu -29 283 4 468 270 137 63 chrX 8879016 8879545 -168094595 - L1MC4 LINE L1 -488 7554 6959 300 53 0 0 chrX 8879609 8879647 -168094493 + (CA)n Simple_repeat Simple_repeat 2 39 0 232 269 32 11 chrX 8880047 8880140 -168094000 + (TG)n Simple_repeat Simple_repeat 2 96 0 1892 147 98 0 chrX 8880445 8880772 -168093368 - MLT1A1 LTR MaLR -4 361 3 227 213 131 0 chrX 8881509 8881570 -168092570 - MLT1I LTR MaLR 0 409 341 234 224 0 0 chrX 8881697 8881746 -168092394 - MLT1I LTR MaLR -276 133 85 180 0 0 0 chrX 8882080 8882100 -168092040 + (A)n Simple_repeat Simple_repeat 1 20 0 2352 109 0 0 chrX 8882102 8882413 -168091727 + AluSx SINE Alu 1 311 -1 307 160 0 0 chrX 8882775 8882825 -168091315 - MER58 DNA MER1_type -118 223 174 375 244 0 0 chrX 8883046 8883132 -168091008 - L1MC4a LINE L1 -251 7557 7472 2265 92 0 0 chrX 8883138 8883420 -168090720 + AluSx SINE Alu 1 282 -30 2390 75 0 31 chrX 8883422 8883740 -168090400 + AluY SINE Alu 1 308 -3 1714 148 40 7 chrX 8884637 8884935 -168089205 + AluJb SINE Alu 1 308 -4 2245 93 3 3 chrX 8885141 8885430 -168088710 - AluSx SINE Alu -23 289 1 2358 93 3 0 chrX 8885954 8886264 -168087876 - AluSx SINE Alu -1 311 1 615 187 0 19 chrX 8886743 8886850 -168087290 - MER44D DNA MER2_type -1 604 628 25 21 0 43 chrX 8886850 8886878 -168087262 + AT_rich Low_complexity Low_complexity 1 28 -17 2201 103 3 3 chrX 8886878 8887169 -168086971 + AluSx SINE Alu 1 291 -21 25 21 0 43 chrX 8887169 8887187 -168086953 + AT_rich Low_complexity Low_complexity 28 45 0 694 193 0 0 chrX 8887190 8887309 -168086831 - FLAM_C SINE Alu -12 121 3 3136 170 116 10 chrX 8887314 8887892 -168086248 - MER44D DNA MER2_type -66 639 1 815 204 13 13 chrX 8887926 8888083 -168086057 - FRAM SINE Alu -19 157 1 540 263 34 22 chrX 8888261 8888440 -168085700 + MER58A DNA MER1_type 26 206 -18 335 283 53 62 chrX 8888959 8889185 -168084955 + MLT1K LTR MaLR 357 580 -8 1241 112 0 12 chrX 8889910 8890079 -168084061 - AluJb SINE Alu -145 167 1 344 285 74 20 chrX 8890549 8890832 -168083308 - Zaphod DNA AcHobo 0 4031 388 320 0 0 24 chrX 8891050 8891091 -168083049 + (GA)n Simple_repeat Simple_repeat 2 41 0 2579 68 3 0 chrX 8891898 8892207 -168081933 + AluSp SINE Alu 1 310 -3 236 138 103 35 chrX 8892575 8892633 -168081507 + MLT1F1 LTR MaLR 477 538 -29 2668 39 0 7 chrX 8892729 8893035 -168081105 + AluY SINE Alu 1 304 -7 1990 109 0 81 chrX 8893060 8893380 -168080760 + AluSx SINE Alu 19 312 0 1813 169 0 42 chrX 8893590 8893897 -168080243 - AluJb SINE Alu -18 294 1 677 260 64 20 chrX 8894078 8894328 -168079812 - L1ME3A LINE L1 -278 5892 5632 287 186 17 0 chrX 8894340 8894399 -168079741 - L1ME3A LINE L1 -594 5568 5509 791 126 0 53 chrX 8894675 8894865 -168079275 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1543 180 8 8 chrX 8894895 8895162 -168078978 - AluJo SINE Alu -45 267 1 789 118 41 145 chrX 8895540 8895761 -168078379 - MER3 DNA MER1_type -7 202 5 283 405 8 0 chrX 8896526 8896657 -168077483 - L2 LINE L2 0 3272 3141 2798 210 29 0 chrX 8896863 8897407 -168076733 - MLT1F1 LTR MaLR -2 565 6 201 291 13 25 chrX 8897429 8897508 -168076632 + MIR SINE MIR 77 154 -108 965 168 0 0 chrX 8897513 8897668 -168076472 + FRAM SINE Alu 1 155 -21 1841 143 59 3 chrX 8897808 8898095 -168076045 + AluJb SINE Alu 1 303 -9 1927 140 6 32 chrX 8898229 8898544 -168075596 - AluSx SINE Alu -3 309 3 2321 65 0 14 chrX 8899773 8900064 -168074076 + AluY SINE Alu 12 298 -13 274 336 17 26 chrX 8900293 8900409 -168073731 + MIR3 SINE MIR 88 202 -6 267 54 0 0 chrX 8900848 8900885 -168073255 + (TG)n Simple_repeat Simple_repeat 2 38 0 1762 132 28 60 chrX 8901068 8901386 -168072754 + AluJb SINE Alu 1 308 -4 581 292 46 25 chrX 8901838 8902078 -168072062 + MIR SINE MIR 4 248 -14 631 112 11 0 chrX 8902703 8902792 -168071348 + AluJb SINE Alu 208 297 -15 1987 139 10 10 chrX 8902985 8903165 -168070975 - AluSx SINE Alu 0 463 284 240 35 0 0 chrX 8903165 8903194 -168070946 + (TTCTC)n Simple_repeat Simple_repeat 2 30 0 1987 139 10 10 chrX 8903194 8903476 -168070664 - AluSx SINE Alu -178 285 1 1830 209 70 27 chrX 8903901 8904418 -168069722 - MLT1F LTR MaLR 0 542 4 25 0 0 0 chrX 8905547 8905572 -168068568 + AT_rich Low_complexity Low_complexity 1 25 0 1072 234 38 62 chrX 8906483 8906804 -168067336 + L1MD2 LINE L1 5580 5885 -289 400 307 24 54 chrX 8906804 8906970 -168067170 - LTR16C LTR ERVL -277 214 54 443 252 56 0 chrX 8907025 8907168 -168066972 + HAL1 LINE L1 1123 1273 -1234 2037 106 10 36 chrX 8907378 8907681 -168066459 + AluSx SINE Alu 1 295 -17 1894 159 3 34 chrX 8907712 8908032 -168066108 + AluJb SINE Alu 3 312 0 1778 163 10 0 chrX 8908272 8908567 -168065573 - AluJo SINE Alu -14 298 1 197 336 37 37 chrX 8909585 8909692 -168064448 - MIR SINE MIR -136 126 20 215 156 0 22 chrX 8909795 8909840 -168064300 - MIR3 SINE MIR -54 154 111 1772 150 52 0 chrX 8909885 8910197 -168063943 + AluJb SINE Alu 1 326 0 1231 207 29 42 chrX 8910211 8910520 -168063620 - MER33 DNA MER1_type -3 321 17 2266 155 25 59 chrX 8911174 8911321 -168062819 - Tigger2a DNA MER2_type -2274 434 284 2059 133 0 7 chrX 8911321 8911623 -168062517 + AluJb SINE Alu 3 302 -10 2266 155 25 59 chrX 8911623 8911919 -168062221 - Tigger2a DNA MER2_type -2424 284 6 572 158 9 0 chrX 8912108 8912222 -168061918 + GA-rich Low_complexity Low_complexity 3 117 0 1750 172 30 0 chrX 8912537 8912872 -168061268 - AluJb SINE Alu 0 344 1 769 188 0 0 chrX 8912879 8913012 -168061128 - AluJb SINE Alu -178 134 2 331 273 56 28 chrX 8915350 8915493 -168058647 + (CATG)n Simple_repeat Simple_repeat 1 147 0 316 369 20 7 chrX 8915455 8915655 -168058485 + (CGTG)n Simple_repeat Simple_repeat 1 202 0 * 276 278 0 33 chrX 8916150 8916240 -168057900 + CT-rich Low_complexity Low_complexity 4 90 0 1672 174 3 17 chrX 8916427 8916721 -168057419 - AluJo SINE Alu -22 290 1 487 208 57 78 chrX 8917255 8917396 -168056744 + MER5A DNA MER1_type 2 139 -50 2122 145 0 0 chrX 8917396 8917706 -168056434 + AluJo SINE Alu 1 310 -2 487 208 57 78 chrX 8917706 8917756 -168056384 + MER5A DNA MER1_type 139 189 0 22 0 0 0 chrX 8919104 8919126 -168055014 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 8919524 8919549 -168054591 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 8920456 8920484 -168053656 + AT_rich Low_complexity Low_complexity 1 28 0 2060 138 3 0 chrX 8920484 8920773 -168053367 - AluJo SINE Alu -22 290 1 387 283 10 0 chrX 8920778 8920877 -168053263 - MER58A DNA MER1_type -124 100 1 616 299 22 9 chrX 8921272 8921496 -168052644 + MLT1J2 LTR MaLR 1 227 -223 339 237 0 13 chrX 8921616 8921692 -168052448 - Tigger5 DNA MER2_type -1 2322 2248 578 193 379 0 chrX 8921694 8921834 -168052306 - Tigger5 DNA MER2_type -2130 193 1 35 54 0 0 chrX 8922555 8922611 -168051529 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chrX 8922679 8922708 -168051432 + AT_rich Low_complexity Low_complexity 1 29 0 1168 148 23 0 chrX 8923224 8923400 -168050740 - AluJ SINE Alu 0 312 133 444 89 38 0 chrX 8923400 8923479 -168050661 + (TA)n Simple_repeat Simple_repeat 2 83 0 817 176 0 0 chrX 8923479 8923604 -168050536 - AluJ SINE Alu -187 125 1 326 252 53 8 chrX 8923634 8923765 -168050375 + L2 LINE L2 2367 2503 -811 2200 120 3 7 chrX 8923900 8924201 -168049939 + AluSx SINE Alu 3 302 -10 433 241 188 0 chrX 8924610 8924743 -168049397 - MER5A DNA MER1_type -25 164 7 2541 176 12 16 chrX 8925123 8925607 -168048533 - L1MB5 LINE L1 -19 6155 5674 203 161 0 0 chrX 8926122 8926153 -168047987 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chrX 8926153 8926180 -168047960 + (CA)n Simple_repeat Simple_repeat 1 27 0 266 299 0 0 chrX 8927867 8927934 -168046206 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2145 127 0 0 chrX 8929393 8929718 -168044422 - AluSx SINE Alu 0 312 2 191 287 0 46 chrX 8929772 8929859 -168044281 - L2 LINE L2 -319 2953 2871 1386 185 89 15 chrX 8930289 8930614 -168043526 + MLT1C LTR MaLR 4 352 -115 978 182 0 0 chrX 8930615 8930791 -168043349 + FRAM SINE Alu 1 176 0 739 172 0 22 chrX 8930837 8930971 -168043169 + MLT1C LTR MaLR 337 467 0 1580 149 29 40 chrX 8931317 8931592 -168042548 - AluJo SINE Alu -36 276 5 189 74 0 0 chrX 8932782 8932809 -168041331 + (TC)n Simple_repeat Simple_repeat 2 28 0 2032 102 18 7 chrX 8932809 8933083 -168041057 - AluSg SINE Alu -32 278 2 200 179 27 54 chrX 8933545 8933657 -168040483 + CT-rich Low_complexity Low_complexity 1 109 0 420 145 62 33 chrX 8933673 8934164 -168039976 + CT-rich Low_complexity Low_complexity 1 505 0 716 267 52 9 chrX 8934228 8934438 -168039702 - MER58A DNA MER1_type -5 219 1 267 226 50 0 chrX 8934492 8934582 -168039558 - MER5A DNA MER1_type -90 99 4 1806 136 15 0 chrX 8936291 8936564 -168037576 + L1PA15 LINE L1 5889 6165 0 845 90 14 14 chrX 8936676 8936820 -168037320 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 2279 107 3 0 chrX 8936824 8937122 -168037018 - AluSx SINE Alu -13 299 1 422 288 20 0 chrX 8937504 8937650 -168036490 + MER104 DNA Tc2 6 154 -26 338 178 55 0 chrX 8937844 8937917 -168036223 + MER5A DNA MER1_type 3 79 -110 209 295 189 18 chrX 8937988 8938205 -168035935 + L2 LINE L2 2228 2481 -833 466 291 179 22 chrX 8938712 8939031 -168035109 + L2 LINE L2 2897 3265 -7 24 32 0 0 chrX 8939181 8939212 -168034928 + AT_rich Low_complexity Low_complexity 1 31 0 773 154 32 0 chrX 8939217 8939340 -168034800 - FLAM_C SINE Alu -5 128 2 702 126 0 0 chrX 8939501 8939604 -168034536 - AluSg/x SINE Alu 0 310 208 864 201 34 0 chrX 8939849 8940028 -168034112 + MER20 DNA MER1_type 34 218 -1 1719 174 0 14 chrX 8940161 8940454 -168033686 - AluJb SINE Alu -12 300 12 2289 115 0 3 chrX 8941021 8941334 -168032806 + AluSx SINE Alu 1 312 0 1597 141 23 19 chrX 8941344 8941607 -168032533 + AluJo SINE Alu 43 306 -6 738 303 71 29 chrX 8941751 8942131 -168032009 + Charlie7 DNA MER1_type 294 689 -1923 3490 206 15 48 chrX 8942268 8942625 -168031515 - L1ME1 LINE L1 -4 6162 5795 1863 153 7 17 chrX 8942625 8942920 -168031220 - AluJo SINE Alu -20 292 1 3490 206 15 48 chrX 8942920 8943410 -168030730 - L1ME1 LINE L1 -371 5795 5343 276 232 40 111 chrX 8944358 8944556 -168029584 - L2 LINE L2 -12 3301 3118 2189 66 4 4 chrX 8945745 8946016 -168028124 + AluSq SINE Alu 36 306 -7 371 280 7 53 chrX 8946215 8946365 -168027775 + LTR16B LTR ERVL 1 143 -321 2597 222 1 39 chrX 8947227 8947876 -168026264 + L1M4 LINE L1 4421 5045 -1101 936 231 15 0 chrX 8948176 8948375 -168025765 + L1MC4a LINE L1 6647 6848 -960 411 289 131 41 chrX 8949683 8949980 -168024160 + L2 LINE L2 2791 3145 -168 1382 114 274 0 chrX 8949980 8950217 -168023923 - AluSx SINE Alu 0 302 1 411 289 131 41 chrX 8950217 8950390 -168023750 + L2 LINE L2 3145 3301 -12 1821 140 7 4 chrX 8950393 8950664 -168023476 + AluJo SINE Alu 24 295 -17 446 131 9 37 chrX 8950842 8950949 -168023191 + (TCTA)n Simple_repeat Simple_repeat 1 104 0 224 264 11 55 chrX 8951311 8951402 -168022738 + CT-rich Low_complexity Low_complexity 4 90 0 200 179 0 0 chrX 8951539 8951578 -168022562 + MIR SINE MIR 116 154 -108 7081 194 53 77 chrX 8951759 8953799 -168020341 - L1MC4a LINE L1 0 7808 5817 743 256 39 62 chrX 8953857 8953896 -168020244 - L1ME3 LINE L1 0 6162 6124 1519 172 15 8 chrX 8953896 8954163 -168019977 - AluJb SINE Alu -43 269 1 743 256 39 62 chrX 8954163 8954431 -168019709 - L1ME3 LINE L1 -38 6124 5862 1258 276 131 16 chrX 8956315 8956742 -168017398 + MLT1G1 LTR MaLR 47 522 -73 252 0 0 0 chrX 8956965 8956993 -168017147 + (CA)n Simple_repeat Simple_repeat 2 29 0 2054 123 0 0 chrX 8957349 8957626 -168016514 + AluSx SINE Alu 1 277 -35 576 172 43 17 chrX 8958984 8959100 -168015040 - MER45A DNA AcHobo 0 178 60 1882 203 116 51 chrX 8959105 8959516 -168014624 - L1ME1 LINE L1 -222 5944 5482 2131 127 7 7 chrX 8959516 8959824 -168014316 - AluJb SINE Alu -4 308 1 1882 203 116 51 chrX 8959824 8959999 -168014141 - L1ME1 LINE L1 -684 5482 5320 1237 237 15 4 chrX 8959999 8960269 -168013871 + AluJo SINE Alu 38 310 -2 936 283 51 20 chrX 8960269 8960661 -168013479 - L1ME1 LINE L1 -832 5314 4911 2048 142 0 7 chrX 8960889 8961185 -168012955 + AluSx SINE Alu 1 294 -18 1728 121 118 7 chrX 8961298 8961570 -168012570 - AluJo SINE Alu -10 302 1 325 152 217 43 chrX 8962253 8962345 -168011795 - ORSL DNA AcHobo -7 268 161 22 0 0 0 chrX 8962437 8962459 -168011681 + AT_rich Low_complexity Low_complexity 1 22 0 235 259 26 17 chrX 8962459 8962575 -168011565 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 * 258 274 22 17 chrX 8962512 8962691 -168011449 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 8962695 8962717 -168011423 + AT_rich Low_complexity Low_complexity 1 22 0 212 193 46 28 chrX 8962738 8962847 -168011293 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 * 240 292 26 0 chrX 8962809 8962922 -168011218 + (TA)n Simple_repeat Simple_repeat 1 116 0 1848 268 37 54 chrX 8963499 8964414 -168009726 + L1M4 LINE L1 2671 3570 -2576 992 208 120 33 chrX 8964502 8964874 -168009266 + MLT1C LTR MaLR 13 432 -35 598 253 59 15 chrX 8964881 8965083 -168009057 - MIR SINE MIR -24 238 28 295 259 0 12 chrX 8966613 8966694 -168007446 - MER5A DNA MER1_type -84 105 26 956 122 0 10 chrX 8966823 8967007 -168007133 + AluJb SINE Alu 1 258 -54 860 133 0 0 chrX 8968101 8968221 -168005919 + FRAM SINE Alu 37 156 -20 21 36 0 0 chrX 8968232 8968260 -168005880 + AT_rich Low_complexity Low_complexity 1 28 0 975 139 0 6 chrX 8968260 8968418 -168005722 - L1MA5A LINE L1 -7 6290 6134 935 114 15 0 chrX 8969024 8969155 -168004985 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chrX 8969217 8969240 -168004900 + (A)n Simple_repeat Simple_repeat 1 23 0 909 204 32 16 chrX 8969649 8969835 -168004305 + MER20 DNA MER1_type 31 219 0 481 267 50 22 chrX 8969835 8970015 -168004125 - L1MC4 LINE L1 -502 7540 7356 279 0 0 0 chrX 8970132 8970163 -168003977 + (CA)n Simple_repeat Simple_repeat 1 31 0 1808 136 72 0 chrX 8970879 8971171 -168002969 + AluSx SINE Alu 1 311 0 2553 196 10 6 chrX 8971630 8972131 -168002009 - L1MD3 LINE L1 -127 7868 7366 382 296 46 33 chrX 8972463 8972615 -168001525 - MIR SINE MIR -105 157 4 241 374 108 28 chrX 8973007 8973256 -168000884 - L2 LINE L2 -28 3244 2976 252 347 31 0 chrX 8974960 8975058 -167999082 - MIR3 SINE MIR 0 208 108 1647 184 16 29 chrX 8975130 8975446 -167998694 - AluJo SINE Alu 0 312 1 411 313 16 11 chrX 8976625 8976807 -167997333 - L1ME4a LINE L1 -213 5908 5726 965 174 43 22 chrX 8977228 8977412 -167996728 + MER20 DNA MER1_type 32 219 0 868 321 25 101 chrX 8977848 8977950 -167996190 + Tigger8 DNA MER2_type 2 110 -556 4186 33 0 0 chrX 8977950 8978409 -167995731 + L1PA6 LINE L1 5683 6141 -13 868 321 25 101 chrX 8978409 8979019 -167995121 + Tigger8 DNA MER2_type 110 660 -6 23 0 0 0 chrX 8980314 8980337 -167993803 + AT_rich Low_complexity Low_complexity 1 23 0 315 305 64 35 chrX 8981094 8981235 -167992905 + MIR3 SINE MIR 37 181 -27 767 233 7 0 chrX 8981318 8981468 -167992672 + MER5A DNA MER1_type 1 151 -38 1346 152 0 15 chrX 8981468 8981715 -167992425 + AluJb SINE Alu 84 327 0 4945 129 39 14 chrX 8981716 8982478 -167991662 + MER41-int LTR ERV1 2051 2831 -3115 467 319 24 24 chrX 8982528 8982738 -167991402 - LTR16B LTR ERVL -58 406 197 956 228 29 0 chrX 8982746 8982952 -167991188 + MER20 DNA MER1_type 8 219 0 2579 66 0 0 chrX 8984166 8984470 -167989670 - AluY SINE Alu -7 304 1 201 39 0 0 chrX 8984685 8984711 -167989429 + (CA)n Simple_repeat Simple_repeat 2 27 0 2418 262 67 39 chrX 8985965 8986023 -167988117 - HAL1b LINE L1 0 1348 1293 243 0 0 0 chrX 8986023 8986050 -167988090 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 2418 262 67 39 chrX 8986050 8986978 -167987162 - HAL1b LINE L1 -55 1293 334 481 296 58 17 chrX 8987125 8987297 -167986843 - MIR SINE MIR -12 250 72 536 243 28 0 chrX 8987343 8987487 -167986653 + L1MD2 LINE L1 6212 6359 0 271 231 130 59 chrX 8987923 8988092 -167986048 - MLT1H LTR MaLR -274 275 95 530 306 45 25 chrX 8988240 8988439 -167985701 - MIR SINE MIR -14 248 46 27 0 0 0 chrX 8988479 8988506 -167985634 + AT_rich Low_complexity Low_complexity 1 27 0 551 221 0 10 chrX 8989141 8989245 -167984895 - MIR SINE MIR -154 108 6 722 217 39 78 chrX 8989283 8989513 -167984627 + MLT1E LTR MaLR 3 223 -370 484 243 5 19 chrX 8989515 8989701 -167984439 + MLT1F1 LTR MaLR 331 560 -7 198 245 0 38 chrX 8989841 8989894 -167984246 - MIR SINE MIR -133 75 25 1320 204 85 27 chrX 8990121 8990450 -167983690 - MLT1F LTR MaLR -2 540 193 3869 156 9 3 chrX 8991722 8992355 -167981785 - L1MB3 LINE L1 -3 6180 5544 2181 176 134 12 chrX 8992453 8992953 -167981187 - L1MB8 LINE L1 -15 6163 5603 1650 199 46 9 chrX 8992953 8993299 -167980841 + MLT1A1 LTR MaLR 1 359 -6 1786 174 7 20 chrX 8993305 8993654 -167980486 - L1MB8 LINE L1 -566 5608 5263 237 269 220 43 chrX 8993660 8993801 -167980339 - MIR SINE MIR -95 167 2 629 270 39 28 chrX 8994328 8994506 -167979634 - MER5A DNA MER1_type -6 183 4 1726 221 126 27 chrX 8994738 8995295 -167978845 + MLT1E3 LTR MaLR 8 619 -5 253 203 95 14 chrX 8995578 8995652 -167978488 - MLT1F LTR MaLR -574 80 1 2064 130 0 7 chrX 8996309 8996593 -167977547 - AluSx SINE Alu -30 282 1 243 302 47 9 chrX 8996870 8996976 -167977164 - L2 LINE L2 -7 3265 3156 1347 219 50 7 chrX 8997341 8997643 -167976497 + MER58B DNA MER1_type 9 323 -18 324 310 157 31 chrX 8998180 8998409 -167975731 - L2 LINE L2 0 3313 3056 2650 43 0 0 chrX 8999056 8999360 -167974780 - AluY SINE Alu -7 304 1 1564 104 0 5 chrX 8999439 8999651 -167974489 - AluSg/x SINE Alu -15 297 87 349 249 34 17 chrX 8999695 8999872 -167974268 + (TA)n Simple_repeat Simple_repeat 1 180 0 255 229 59 29 chrX 8999826 8999996 -167974144 + (TATATG)n Simple_repeat Simple_repeat 6 180 0 * 206 270 135 54 chrX 9000752 9000863 -167973277 + MER5B DNA MER1_type 30 149 -29 * 323 222 10 91 chrX 9000767 9000866 -167973274 - MER5B DNA MER1_type -61 117 27 209 132 0 53 chrX 9001474 9001512 -167972628 + L2 LINE L2 3219 3254 -18 1690 145 105 44 chrX 9001891 9002235 -167971905 + MLT1A1 LTR MaLR 1 365 0 368 269 171 16 chrX 9003097 9003342 -167970798 - L1ME4a LINE L1 -82 6039 5757 16145 112 14 17 chrX 9003489 9005879 -167968261 - Tigger1 DNA MER2_type -6 2412 30 781 236 22 6 chrX 9005996 9006174 -167967966 - MER5A DNA MER1_type 0 189 9 1745 136 16 63 chrX 9006380 9006697 -167967443 + AluJo SINE Alu 1 302 -10 2313 90 3 3 chrX 9007026 9007326 -167966814 - AluSc SINE Alu -9 300 1 190 0 32 32 chrX 9010051 9010082 -167964058 + (TA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chrX 9010740 9010764 -167963376 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 371 308 48 56 chrX 9012163 9012413 -167961727 - HERV16 LTR ERVL -4347 649 402 2201 72 58 3 chrX 9012815 9012980 -167961160 - AluSc SINE Alu -1 308 119 2768 60 12 0 chrX 9012980 9013314 -167960826 - L1PA7 LINE L1 0 6154 5817 2201 72 58 3 chrX 9013314 9013440 -167960700 - AluSc SINE Alu -190 119 1 1629 168 43 16 chrX 9013947 9014251 -167959889 + AluJo SINE Alu 1 312 0 315 222 32 79 chrX 9014305 9014431 -167959709 - L1ME3A LINE L1 -89 6081 5962 1165 208 99 70 chrX 9014508 9014993 -167959147 - L1MC5 LINE L1 -420 7541 7043 470 255 20 7 chrX 9015097 9015246 -167958894 + HAL1 LINE L1 2285 2435 -72 23 0 0 0 chrX 9015283 9015306 -167958834 + AT_rich Low_complexity Low_complexity 1 23 0 322 302 12 0 chrX 9015985 9016071 -167958069 + CT-rich Low_complexity Low_complexity 1 87 0 545 324 152 19 chrX 9116596 9117183 -167856957 - L3 LINE CR1 -149 1428 764 241 381 21 21 chrX 9117266 9117363 -167856777 - L3 LINE CR1 -1044 533 437 503 286 13 39 chrX 9117364 9117518 -167856622 - MIR3 SINE MIR -10 198 49 2081 173 7 31 chrX 9117668 9118089 -167856051 + L1MB7 LINE L1 5751 6161 -23 333 57 63 88 chrX 9119026 9119185 -167854955 + (CACAA)n Simple_repeat Simple_repeat 5 159 0 216 178 44 50 chrX 9119219 9119399 -167854741 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 * 266 106 113 6 chrX 9119371 9119531 -167854609 + (CA)n Simple_repeat Simple_repeat 2 178 0 405 86 63 40 chrX 9119575 9119750 -167854390 + (CA)n Simple_repeat Simple_repeat 1 179 0 330 143 0 0 chrX 9119777 9119840 -167854300 + (TC)n Simple_repeat Simple_repeat 1 63 0 318 341 0 0 chrX 9120680 9120771 -167853369 - L1MC4 LINE L1 -1339 6703 6613 400 324 116 0 chrX 9121619 9121792 -167852348 + MIR SINE MIR 50 242 -20 1039 89 6 22 chrX 9121975 9122055 -167852085 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 1039 89 6 22 chrX 9122055 9122234 -167851906 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 249 109 0 87 chrX 9122547 9122593 -167851547 + L2 LINE L2 3272 3313 0 2307 88 3 0 chrX 9122986 9123283 -167850857 - AluSp SINE Alu -15 298 1 302 314 52 83 chrX 9123413 9123642 -167850498 + HAL1 LINE L1 2226 2447 -60 203 196 28 122 chrX 9123734 9123841 -167850299 - MER5A DNA MER1_type -86 103 7 363 250 94 16 chrX 9125530 9125658 -167848482 - MER103 DNA DNA -6 160 23 1393 155 0 0 chrX 9125673 9125899 -167848241 - AluJo SINE Alu 0 312 87 456 188 143 9 chrX 9126974 9127086 -167847054 + L1MB3 LINE L1 5739 5865 -318 5526 113 19 2 chrX 9127654 9128459 -167845681 - L1PA13 LINE L1 0 6163 5346 329 157 84 36 chrX 9229523 9229606 -167744534 - L1MB3 LINE L1 -1 6182 6096 3082 128 49 16 chrX 9229706 9230039 -167744101 + L1MB1 LINE L1 5158 5525 -809 2101 121 0 0 chrX 9230039 9230353 -167743787 + AluSx SINE Alu 1 314 0 3082 128 49 16 chrX 9230353 9230624 -167743516 + L1MB1 LINE L1 5525 5786 -548 850 125 0 0 chrX 9230628 9230748 -167743392 - AluSg/x SINE Alu -41 271 152 1651 180 23 0 chrX 9230748 9231048 -167743092 + L1MB1 LINE L1 5789 6095 -73 868 148 15 103 chrX 9231621 9231827 -167742313 - L1MD2 LINE L1 -143 6021 5826 2621 151 39 2 chrX 9231943 9232354 -167741786 - MSTB LTR MaLR 0 426 1 463 101 14 0 chrX 9232621 9232690 -167741450 - THE1B LTR MaLR 0 364 295 1840 163 0 23 chrX 9232863 9233170 -167740970 - AluJb SINE Alu -12 300 1 344 206 62 10 chrX 9233179 9233276 -167740864 + MER5C DNA MER1_type 212 313 -11 24 0 0 0 chrX 9233566 9233590 -167740550 + AT_rich Low_complexity Low_complexity 1 24 0 3348 139 27 11 chrX 9233590 9234144 -167739996 - L1PB4 LINE L1 -8 6148 5586 2137 126 3 28 chrX 9234362 9234680 -167739460 - AluJb SINE Alu -2 310 1 1192 195 0 14 chrX 9236709 9236924 -167737216 - MLT1E LTR MaLR -2 591 380 234 0 0 0 chrX 9237326 9237352 -167736788 + (A)n Simple_repeat Simple_repeat 1 26 0 216 152 22 43 chrX 9237700 9237746 -167736394 + CT-rich Low_complexity Low_complexity 1 45 0 242 277 40 30 chrX 9238051 9238152 -167735988 + Charlie7 DNA MER1_type 2511 2612 0 1079 250 101 22 chrX 9238288 9238604 -167735536 + MLT1E LTR MaLR 15 355 -238 230 224 45 0 chrX 9240163 9240230 -167733910 - L1MCa LINE L1 -4362 2064 1995 213 216 0 0 chrX 9240230 9240267 -167733873 + (CATA)n Simple_repeat Simple_repeat 2 38 0 311 269 0 43 chrX 9240268 9240361 -167733779 - L1MC4 LINE L1 -1339 6703 6615 426 176 0 0 chrX 9240370 9240455 -167733685 + (TA)n Simple_repeat Simple_repeat 1 85 0 1165 144 26 0 chrX 9240742 9240760 -167733380 - L1MB7 LINE L1 -241 5943 5926 345 322 75 13 chrX 9240760 9240987 -167733153 - L1PB2 LINE L1 -226 5925 5685 306 231 0 0 chrX 9240992 9241083 -167733057 + (TG)n Simple_repeat Simple_repeat 2 92 0 707 236 66 33 chrX 9241332 9241544 -167732596 + MER20 DNA MER1_type 1 219 0 506 160 0 40 chrX 9243769 9243869 -167730271 - L1 LINE L1 -1163 4983 4888 21 36 0 0 chrX 9244575 9244603 -167729537 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chrX 9245320 9245346 -167728794 + (CAA)n Simple_repeat Simple_repeat 2 27 0 459 0 0 0 chrX 9246679 9246730 -167727410 + (TC)n Simple_repeat Simple_repeat 1 51 0 2378 97 3 6 chrX 9247685 9247996 -167726144 + AluSx SINE Alu 3 312 0 2228 106 0 26 chrX 9248669 9248980 -167725160 + AluSx SINE Alu 1 303 -9 1350 157 0 9 chrX 9249955 9250172 -167723968 - L1PA15 LINE L1 -2 6163 5949 621 326 6 0 chrX 9250568 9250746 -167723394 + MER8 DNA MER2_type 1 179 -60 248 227 0 0 chrX 9250721 9250765 -167723375 + MER2 DNA MER2_type 282 325 -20 * 1385 176 24 0 chrX 9250943 9251193 -167722947 - Tigger3(Golem) DNA MER2_type -2 3027 2772 559 229 84 0 chrX 9251191 9251322 -167722818 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 279 274 9 101 chrX 9251551 9251587 -167722553 + L2 LINE L2 3111 3149 -164 2379 219 41 2 chrX 9251587 9252071 -167722069 + MLT1D LTR MaLR 3 505 0 279 274 9 101 chrX 9252071 9252253 -167721887 + L2 LINE L2 3149 3309 -4 1955 164 0 6 chrX 9252407 9252719 -167721421 - AluJo SINE Alu -2 310 1 321 68 0 0 chrX 9253313 9253357 -167720783 + (TC)n Simple_repeat Simple_repeat 1 44 0 1297 35 0 12 chrX 9253357 9253526 -167720614 + (TTC)n Simple_repeat Simple_repeat 1 167 0 217 369 0 0 chrX 9253895 9253960 -167720180 - L2 LINE L2 -1 3271 3207 222 313 30 0 chrX 9254621 9254688 -167719452 - MIR3 SINE MIR -54 154 86 1580 177 38 13 chrX 9254734 9255050 -167719090 + MER33 DNA MER1_type 1 324 0 258 81 0 0 chrX 9255106 9255143 -167718997 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 392 302 0 0 chrX 9255813 9255919 -167718221 + MER5A DNA MER1_type 4 109 -80 25 0 0 0 chrX 9256330 9256355 -167717785 + AT_rich Low_complexity Low_complexity 1 25 0 445 115 16 0 chrX 9256841 9256902 -167717238 + AluS SINE Alu 2 63 -247 219 36 0 0 chrX 9257032 9257060 -167717080 + (CCAA)n Simple_repeat Simple_repeat 4 31 0 394 239 43 34 chrX 9257065 9257182 -167716958 - MIR3 SINE MIR -79 129 12 249 139 0 0 chrX 9257758 9257801 -167716339 + (A)n Simple_repeat Simple_repeat 1 43 0 1983 99 13 40 chrX 9257802 9258104 -167716036 + L1PA16 LINE L1 5871 6164 -2 1677 172 0 7 chrX 9258693 9258984 -167715156 + AluSx SINE Alu 1 289 -23 2231 185 70 8 chrX 9259014 9259135 -167715005 - L1MA8 LINE L1 -3 6288 6176 252 0 0 0 chrX 9259135 9259163 -167714977 + (TG)n Simple_repeat Simple_repeat 1 28 0 2231 185 70 8 chrX 9259163 9259527 -167714613 - L1MA8 LINE L1 -115 6176 5773 414 311 152 7 chrX 9259823 9260093 -167714047 - L1ME3 LINE L1 -42 6120 5812 905 210 27 0 chrX 9261125 9261311 -167712829 + MER20 DNA MER1_type 29 219 0 2030 127 19 6 chrX 9261565 9261879 -167712261 + L1MA10 LINE L1 6016 6333 -1 205 333 28 0 chrX 9262616 9262688 -167711452 - L3 LINE CR1 -2 1575 1502 579 252 224 29 chrX 9262943 9263256 -167710884 - MLT1K LTR MaLR -19 569 196 2260 110 0 16 chrX 9264034 9264343 -167709797 + AluSx SINE Alu 1 304 -8 1140 196 33 9 chrX 9264673 9264887 -167709253 + MER20 DNA MER1_type 1 219 0 341 115 0 9 chrX 9265091 9265155 -167708985 - Alu SINE Alu -254 46 1 608 243 7 0 chrX 9266033 9266177 -167707963 + Tigger6a DNA MER2_type 397 541 -542 509 265 27 7 chrX 9266187 9266334 -167707806 - MER45R DNA AcHobo -1014 567 418 431 272 44 9 chrX 9266868 9266982 -167707158 - L2 LINE L2 -10 3303 3186 191 261 0 0 chrX 9267155 9267201 -167706939 + L2 LINE L2 2302 2347 -967 708 211 96 58 chrX 9267201 9267442 -167706698 + L1ME3A LINE L1 5856 6116 -54 882 221 118 11 chrX 9267445 9267707 -167706433 - L1ME3A LINE L1 -5 6165 5876 420 198 117 0 chrX 9267809 9267920 -167706220 - L1ME3A LINE L1 -585 5581 5458 876 361 102 24 chrX 9268206 9269440 -167704700 - L2 LINE L2 -210 3062 1731 411 272 53 0 chrX 9270117 9270231 -167703909 + L2 LINE L2 3193 3312 -1 2191 107 7 0 chrX 9270932 9271222 -167702918 + AluSq SINE Alu 2 293 -20 1858 164 52 30 chrX 9271805 9272130 -167702010 + THE1C LTR MaLR 1 336 -39 2041 105 0 0 chrX 9272130 9272396 -167701744 - AluSq SINE Alu -47 266 1 1858 164 52 30 chrX 9272396 9272437 -167701703 + THE1C LTR MaLR 336 375 0 1007 233 57 28 chrX 9273091 9273443 -167700697 - L1M4 LINE L1 -3145 3001 2640 3259 22 0 0 chrX 9274090 9274455 -167699685 + L1P2 LINE L1 5407 5771 -383 2084 115 7 3 chrX 9274851 9275138 -167699002 - AluSx SINE Alu -24 288 1 256 337 11 80 chrX 9275358 9275545 -167698595 + L2 LINE L2 2992 3165 -107 480 259 22 43 chrX 9275561 9275700 -167698440 + MIR SINE MIR 2 137 -125 1669 211 14 6 chrX 9276090 9276451 -167697689 + L1MB8 LINE L1 5813 6176 -2 1617 98 10 0 chrX 9276463 9276667 -167697473 + AluSq SINE Alu 1 206 -107 360 119 0 0 chrX 9276668 9276727 -167697413 + AluSq SINE Alu 244 302 0 23 0 0 0 chrX 9276871 9276894 -167697246 + AT_rich Low_complexity Low_complexity 1 23 0 2309 164 11 11 chrX 9276899 9277264 -167696876 + MLT1A1 LTR MaLR 1 365 0 190 264 230 43 chrX 9277358 9277572 -167696568 + L2 LINE L2 1985 2248 -1066 333 0 0 0 chrX 9277572 9277609 -167696531 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 264 230 43 chrX 9277609 9277629 -167696511 + L2 LINE L2 2248 2263 -1051 262 365 54 40 chrX 9277812 9278034 -167696106 + L2 LINE L2 2543 2767 -547 388 360 54 30 chrX 9278205 9278502 -167695638 + L2 LINE L2 2969 3272 0 26 30 0 0 chrX 9279041 9279074 -167695066 + AT_rich Low_complexity Low_complexity 1 33 0 229 211 53 18 chrX 9279417 9279474 -167694666 - MLT1L LTR MaLR -50 565 507 2037 101 10 24 chrX 9280595 9280892 -167693248 - AluSq SINE Alu -16 297 5 1811 165 0 4 chrX 9281123 9281402 -167692738 + AluJb SINE Alu 1 278 -34 982 114 6 6 chrX 9281405 9281571 -167692569 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 750 288 10 0 chrX 9282364 9282569 -167691571 - MLT1E3 LTR MaLR 0 624 418 358 203 75 60 chrX 9282670 9282755 -167691385 - MLT1E1 LTR MaLR -354 300 211 2692 154 7 0 chrX 9282755 9283178 -167690962 + MSTC LTR MaLR 3 428 0 358 203 75 60 chrX 9283178 9283225 -167690915 - MLT1E1 LTR MaLR -443 211 166 * 625 230 0 0 chrX 9283211 9283337 -167690803 - MLT1E1 LTR MaLR -521 133 8 232 130 56 0 chrX 9283602 9283656 -167690484 + GA-rich Low_complexity Low_complexity 3 59 0 3426 130 5 0 chrX 9283685 9284298 -167689842 + L1PA16 LINE L1 5431 6160 -6 237 255 62 125 chrX 9284338 9284546 -167689594 - L2 LINE L2 0 3313 3119 426 221 215 0 chrX 9285130 9285288 -167688852 + L1MC2 LINE L1 6140 6331 -13 261 124 93 0 chrX 9285548 9285677 -167688463 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 3544 65 9 0 chrX 9285722 9286182 -167687958 - L1PA13 LINE L1 -4 6159 5696 253 275 81 47 chrX 9286231 9286489 -167687651 - L1M4 LINE L1 -1353 4793 4527 2401 60 0 0 chrX 9286539 9286854 -167687286 - AluY SINE Alu 0 315 1 1163 226 141 19 chrX 9286883 9287357 -167686783 - L1ME1 LINE L1 -18 6148 5617 388 289 58 5 chrX 9287383 9287591 -167686549 - L1M4 LINE L1 -1693 4453 4235 402 314 114 68 chrX 9288630 9289041 -167685099 - L1MEd LINE L1 -5674 445 16 602 124 0 0 chrX 9289905 9289994 -167684146 - AluSg/x SINE Alu -18 292 204 818 241 169 16 chrX 9290978 9291285 -167682855 - MLT1E LTR MaLR 0 593 240 273 250 0 0 chrX 9291485 9291549 -167682591 - HsTC2 DNA Tc2 -1798 100 37 795 143 0 7 chrX 9291605 9291745 -167682395 - L1MB8 LINE L1 -18 6160 6022 219 150 0 0 chrX 9291745 9291785 -167682355 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 512 15 0 0 chrX 9292225 9292290 -167681850 + L1PA4 LINE L1 6091 6155 0 2239 144 45 13 chrX 9292319 9292716 -167681424 + MSTB LTR MaLR 1 410 -16 295 291 100 0 chrX 9292999 9293109 -167681031 - MER103 DNA DNA -44 122 2 363 271 26 46 chrX 9293207 9293358 -167680782 - L3 LINE CR1 -627 950 803 187 360 142 41 chrX 9293538 9293955 -167680185 - L3 LINE CR1 -930 647 189 1105 241 78 74 chrX 9294231 9294771 -167679369 + MLT1E LTR MaLR 52 593 0 251 188 0 0 chrX 9297509 9297557 -167676583 + L2 LINE L2 2769 2816 -498 1661 253 132 11 chrX 9297563 9298092 -167676048 + MLT1E LTR MaLR 1 593 0 442 291 20 92 chrX 9298165 9298512 -167675628 + L2 LINE L2 2991 3312 -1 248 180 66 0 chrX 9298630 9298691 -167675449 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 465 338 49 13 chrX 9299836 9300061 -167674079 - MIR SINE MIR -10 252 20 329 241 110 97 chrX 9300061 9300289 -167673851 - HAL1 LINE L1 -2 2505 2275 271 318 11 0 chrX 9300300 9300388 -167673752 + MER63A DNA MER1_type 95 183 -27 542 288 0 0 chrX 9301192 9301324 -167672816 - MER58A DNA MER1_type 0 132 1 1788 120 54 37 chrX 9301584 9301935 -167672205 + THE1C LTR MaLR 1 357 -18 443 309 62 14 chrX 9302064 9302274 -167671866 + MIR SINE MIR 31 250 -12 5606 139 30 10 chrX 9302456 9304032 -167670108 - L1MA5A LINE L1 -5 6292 4685 271 321 9 36 chrX 9304396 9304508 -167669632 + MIR3 SINE MIR 92 200 -8 2204 140 22 36 chrX 9304901 9305314 -167668826 - Tigger2a DNA MER2_type -26 408 2 372 212 40 20 chrX 9307480 9307579 -167666561 - THE1C LTR MaLR -274 101 1 902 137 51 30 chrX 9307637 9307834 -167666306 + THE1C LTR MaLR 175 375 0 2288 99 0 10 chrX 9308309 9308621 -167665519 - AluSc SINE Alu 0 309 1 2391 99 0 0 chrX 9309515 9309819 -167664321 + AluSx SINE Alu 1 304 -8 22 0 0 0 chrX 9309831 9309853 -167664287 + AT_rich Low_complexity Low_complexity 1 22 0 1375 318 89 57 chrX 9310056 9311631 -167662509 - L1MCc LINE L1 -838 6103 4478 1352 93 0 0 chrX 9311672 9311844 -167662296 - AluY SINE Alu -12 299 128 572 309 104 48 chrX 9311960 9312642 -167661498 - L1MCc LINE L1 -2579 4362 3643 335 267 33 7 chrX 9312668 9312818 -167661322 - L1MCc LINE L1 -3316 3625 3472 554 248 119 91 chrX 9313255 9313741 -167660399 + MLT1G LTR MaLR 29 526 -41 1820 124 30 0 chrX 9314748 9315014 -167659126 + AluJb SINE Alu 1 274 -38 921 86 7 13 chrX 9315021 9315173 -167658967 + (GAAA)n Simple_repeat Simple_repeat 2 152 0 302 232 0 24 chrX 9316191 9316273 -167657867 - MER116 DNA Mariner 0 80 1 1489 263 67 61 chrX 9317549 9319382 -167654758 - L1MCc LINE L1 -4259 2863 817 1121 257 45 53 chrX 9319489 9319834 -167654306 - L1MCc LINE L1 -5840 583 237 2284 118 0 0 chrX 9319834 9320140 -167654000 - AluY SINE Alu -5 306 1 1121 257 45 53 chrX 9320140 9320196 -167653944 - L1MCc LINE L1 -6186 237 182 3422 108 12 0 chrX 9320196 9320697 -167653443 - MER84 LTR ERV1 0 507 1 1121 257 45 53 chrX 9320697 9320799 -167653341 - L1MCc LINE L1 -6241 182 83 284 235 12 12 chrX 9321328 9321409 -167652731 - Charlie8 DNA MER1_type -1996 421 341 1669 109 158 21 chrX 9321409 9321739 -167652401 + THE1C LTR MaLR 1 375 0 10797 71 13 0 chrX 9321756 9323175 -167650965 + HERVL LTR ERVL 2818 4254 -1400 3911 89 2 34 chrX 9323535 9324131 -167650009 - L1PB1 LINE L1 0 6151 5575 411 321 91 49 chrX 9324572 9324977 -167649163 + L1MC4a LINE L1 5521 5942 -1866 264 253 13 0 chrX 9325119 9325198 -167648942 - L1MC5 LINE L1 -73 7888 7809 363 23 0 0 chrX 9325256 9325300 -167648840 + (CA)n Simple_repeat Simple_repeat 1 44 0 334 309 61 44 chrX 9325473 9326133 -167648007 - L1M4 LINE L1 -3228 2918 2248 234 0 0 0 chrX 9327623 9327649 -167646491 + (ATG)n Simple_repeat Simple_repeat 1 26 0 826 232 30 15 chrX 9327653 9327671 -167646469 - L1 LINE L1 -856 5290 5274 298 0 23 23 chrX 9327671 9327714 -167646426 + (TA)n Simple_repeat Simple_repeat 2 44 0 826 232 30 15 chrX 9327714 9327958 -167646182 - L1 LINE L1 -872 5274 5024 344 290 107 76 chrX 9328946 9329104 -167645036 + MIR SINE MIR 1 169 -93 1353 268 76 16 chrX 9329104 9329590 -167644550 + MLT2B2 LTR ERVL 1 515 0 344 290 107 76 chrX 9329590 9329655 -167644485 + MIR SINE MIR 169 231 -31 394 237 29 4 chrX 9331667 9332022 -167642118 + (TA)n Simple_repeat Simple_repeat 1 363 0 22 0 0 0 chrX 9332068 9332090 -167642050 + AT_rich Low_complexity Low_complexity 1 22 0 215 137 55 0 chrX 9332301 9332374 -167641766 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 70 0 0 chrX 9332377 9332420 -167641720 + AT_rich Low_complexity Low_complexity 1 43 0 6469 135 10 3 chrX 9332725 9334100 -167640040 + L1MA2 LINE L1 4922 6304 0 24 0 0 0 chrX 9334102 9334126 -167640014 + AT_rich Low_complexity Low_complexity 1 24 0 410 317 72 0 chrX 9334130 9334297 -167639843 + MIR SINE MIR 81 259 -3 231 36 0 0 chrX 9334692 9334720 -167639420 + (GA)n Simple_repeat Simple_repeat 1 28 0 214 370 14 0 chrX 9334762 9334835 -167639305 - L2 LINE L2 -674 2640 2567 740 226 91 68 chrX 9334888 9335197 -167638943 - MLT1C LTR MaLR -64 403 88 1054 88 0 0 chrX 9335197 9335334 -167638806 - AluSg/x SINE Alu -5 307 171 1895 65 0 8 chrX 9335434 9335679 -167638461 + L1PA5 LINE L1 5908 6150 -4 1913 129 0 3 chrX 9335748 9336073 -167638067 - L1P LINE L1 -1223 4923 4600 2973 70 0 12 chrX 9336076 9336490 -167637650 + L1PA8A LINE L1 5719 6127 -4 798 276 89 13 chrX 9337624 9338084 -167636056 + MER20B DNA MER1_type 209 703 -80 1243 229 75 5 chrX 9338175 9338559 -167635581 + L1M4 LINE L1 4760 5170 -976 2080 199 28 37 chrX 9339200 9339708 -167634432 + MLT1D LTR MaLR 1 503 -2 223 318 30 23 chrX 9339964 9340096 -167634044 + (CATG)n Simple_repeat Simple_repeat 4 136 0 299 308 93 6 chrX 9340115 9340287 -167633853 + MARNA DNA Mariner 292 478 -108 2200 116 137 11 chrX 9341302 9341682 -167632458 + MSTA LTR MaLR 1 428 0 25 51 0 0 chrX 9341782 9341821 -167632319 + AT_rich Low_complexity Low_complexity 1 39 0 187 302 16 0 chrX 9342163 9342226 -167631914 + L3b LINE CR1 1169 1232 -351 2323 90 3 0 chrX 9342567 9342867 -167631273 + AluSq SINE Alu 1 301 -12 198 0 0 0 chrX 9342870 9342892 -167631248 + (CA)n Simple_repeat Simple_repeat 1 22 0 2421 28 0 0 chrX 9342978 9343264 -167630876 - L1PA4 LINE L1 -3 6152 5867 1906 109 40 0 chrX 9344279 9344406 -167629734 + AluSx SINE Alu 1 121 -191 420 71 0 0 chrX 9344406 9344462 -167629678 + (CAA)n Simple_repeat Simple_repeat 1 56 0 1906 109 40 0 chrX 9344462 9344610 -167629530 + AluSx SINE Alu 121 287 -25 941 113 0 0 chrX 9345059 9345200 -167628940 - AluSp/q SINE Alu 0 313 173 403 273 164 77 chrX 9345267 9345890 -167628250 - L1M2 LINE L1 -5646 1203 527 1403 134 5 0 chrX 9347339 9347563 -167626577 - L1PA15 LINE L1 -5 6160 5936 231 114 0 0 chrX 9349778 9349813 -167624327 + (GAA)n Simple_repeat Simple_repeat 2 36 0 409 310 177 29 chrX 9349946 9350330 -167623810 - L2 LINE L2 -2024 1290 850 355 266 53 111 chrX 9350331 9350557 -167623583 + MIR SINE MIR 1 213 -49 657 265 10 15 chrX 9350611 9350815 -167623325 - L2 LINE L2 -2464 850 648 924 68 53 0 chrX 9351543 9351675 -167622465 + MER85 DNA T2_type 1 139 0 183 353 128 32 chrX 9352329 9352578 -167621562 + L2 LINE L2 2393 2665 -649 2227 121 0 0 chrX 9354144 9354450 -167619690 + AluSx SINE Alu 2 307 -5 799 201 26 0 chrX 9355679 9355833 -167618307 - FRAM SINE Alu -24 152 1 451 125 65 0 chrX 9355846 9356014 -167618126 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 304 136 64 0 chrX 9356029 9356154 -167617986 + (TATAA)n Simple_repeat Simple_repeat 2 134 0 379 142 68 0 chrX 9356169 9356331 -167617809 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 333 98 92 7 chrX 9356384 9356537 -167617603 + (TA)n Simple_repeat Simple_repeat 1 166 0 295 236 11 34 chrX 9356767 9356856 -167617284 + G-rich Low_complexity Low_complexity 3 89 0 294 156 0 0 chrX 9356921 9356985 -167617155 + G-rich Low_complexity Low_complexity 1 64 0 252 272 20 54 chrX 9357034 9357228 -167616912 + (CGGGG)n Simple_repeat Simple_repeat 1 187 0 318 89 0 0 chrX 9357342 9357387 -167616753 + AluSq/x SINE Alu 90 134 -169 29 0 0 0 chrX 9357387 9357416 -167616724 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 9357445 9357477 -167616663 + AT_rich Low_complexity Low_complexity 1 32 0 379 288 100 18 chrX 9357539 9357768 -167616372 + MER46C DNA MER2_type 1 248 -90 1550 179 50 0 chrX 9357773 9358052 -167616088 + MER1A DNA MER1_type 3 295 -234 1281 242 60 23 chrX 9358113 9358464 -167615676 + MLT1A1 LTR MaLR 1 364 -1 892 202 98 7 chrX 9360787 9361078 -167613062 - L1MB2 LINE L1 -34 6635 6359 * 1186 242 16 22 chrX 9361074 9361438 -167612702 - L1MB2 LINE L1 -1091 5553 5192 * 1252 244 49 16 chrX 9361430 9362008 -167612132 - L1MB2 LINE L1 -3862 2782 2186 * 1550 216 37 117 chrX 9362001 9362970 -167611170 + L1M3a LINE L1 777 1617 -4767 22 35 0 0 chrX 9363100 9363129 -167611011 + AT_rich Low_complexity Low_complexity 1 29 0 2291 90 3 3 chrX 9363223 9363523 -167610617 + AluY SINE Alu 1 300 -11 216 0 0 0 chrX 9363613 9363637 -167610503 + (T)n Simple_repeat Simple_repeat 1 24 0 668 155 16 39 chrX 9363649 9363778 -167610362 + FLAM_C SINE Alu 2 127 -16 200 206 32 16 chrX 9363992 9364055 -167610085 + (TA)n Simple_repeat Simple_repeat 2 65 0 38 39 0 0 chrX 9364897 9364949 -167609191 + AT_rich Low_complexity Low_complexity 1 52 0 1264 172 5 0 chrX 9365071 9365280 -167608860 + AluJb SINE Alu 95 304 -8 1277 155 5 14 chrX 9365310 9365517 -167608623 + AluJo SINE Alu 1 205 -107 751 176 0 0 chrX 9365797 9365916 -167608224 - FLAM_C SINE Alu -20 123 5 985 273 24 60 chrX 9365969 9366435 -167607705 + MLT1D LTR MaLR 3 451 -54 1820 159 24 11 chrX 9366465 9366837 -167607303 - L1MA8 LINE L1 -6 6285 5909 671 227 0 0 chrX 9366838 9366966 -167607174 + FLAM_C SINE Alu 2 129 -4 360 0 0 0 chrX 9366967 9367007 -167607133 + (TG)n Simple_repeat Simple_repeat 2 41 0 475 117 61 6 chrX 9367010 9367173 -167606967 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 1041 232 42 110 chrX 9367661 9368519 -167605621 - L1MB2 LINE L1 -4657 1918 1039 406 300 175 21 chrX 9369052 9369332 -167604808 - L1MB2 LINE L1 -5855 687 365 28 48 0 0 chrX 9369694 9369736 -167604404 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chrX 9370213 9370256 -167603884 + AT_rich Low_complexity Low_complexity 1 43 0 1933 130 0 7 chrX 9370359 9370674 -167603466 - AluSx SINE Alu 0 315 3 258 304 36 18 chrX 9371318 9371430 -167602710 - MLT1H1 LTR MaLR -333 222 109 3349 206 73 9 chrX 9371894 9372384 -167601756 - L1MA9 LINE L1 0 6312 5855 207 0 0 0 chrX 9372384 9372407 -167601733 + (TG)n Simple_repeat Simple_repeat 2 24 0 3349 206 73 9 chrX 9372407 9373579 -167600561 - L1MA9 LINE L1 -457 5855 4540 933 199 6 17 chrX 9374780 9374961 -167599179 + MER5A DNA MER1_type 10 188 -1 1711 255 38 36 chrX 9375328 9375885 -167598255 - MER74A LTR ERVL 0 558 1 194 225 0 0 chrX 9376116 9376156 -167597984 - L2 LINE L2 -5 3308 3269 2253 117 0 0 chrX 9376303 9376612 -167597528 + AluY SINE Alu 1 309 -2 615 236 0 0 chrX 9376673 9376783 -167597357 - FLAM_A SINE Alu -32 110 1 849 277 36 27 chrX 9377660 9378071 -167596069 + L1PA12 LINE L1 1 415 -7166 370 370 52 35 chrX 9378417 9378590 -167595550 + L1M2 LINE L1 656 831 -6018 230 306 84 58 chrX 9378662 9378923 -167595217 + L1M2 LINE L1 800 1067 -5782 297 376 12 18 chrX 9379174 9379344 -167594796 + L1PA12 LINE L1 1776 1944 -5641 1546 235 75 27 chrX 9379428 9380276 -167593864 - L1MCb LINE L1 -4856 1189 815 518 227 76 65 chrX 9380276 9380786 -167593354 - MER4C LTR ERV1 0 685 1 335 293 40 30 chrX 9380802 9381000 -167593140 - MER4C-int LTR ERV1 -14 6584 6385 650 222 7 0 chrX 9381132 9381276 -167592864 - MER4C-int LTR ERV1 -335 5996 5852 422 36 18 0 chrX 9381297 9381353 -167592787 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 7557 188 40 58 chrX 9381379 9381935 -167592205 - LTR49-int LTR ERV1 -497 5983 5418 2402 84 0 3 chrX 9381935 9382231 -167591909 - AluSg SINE Alu -15 295 1 7557 188 40 58 chrX 9382231 9384125 -167590015 - LTR49-int LTR ERV1 -1062 5418 2041 313 202 81 30 chrX 9384126 9384278 -167589862 - LTR49-int LTR ERV1 -3015 3316 1295 281 67 0 22 chrX 9385004 9385049 -167589091 + (CAG)n Simple_repeat Simple_repeat 2 45 0 921 208 25 72 chrX 9386615 9386851 -167587289 + MER50 LTR ERV1 510 734 0 9410 117 74 17 chrX 9386851 9388344 -167585796 + THE1C-int LTR MaLR 4 1580 0 2000 143 102 6 chrX 9388344 9388686 -167585454 + THE1C LTR MaLR 1 375 0 9180 178 8 4 chrX 9388691 9390380 -167583760 - L1P LINE L1 -743 5403 3707 2317 173 22 10 chrX 9390379 9390796 -167583344 - L1PB4 LINE L1 -115 6041 5620 * 785 211 23 6 chrX 9391305 9391476 -167582664 + MER92B LTR ERV1 1 174 -462 232 150 50 0 chrX 9391537 9391597 -167582543 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 1317 203 117 34 chrX 9392411 9392829 -167581311 - MER92B LTR ERV1 0 636 184 509 114 190 0 chrX 9392843 9392968 -167581172 + MSTD LTR MaLR 199 383 -8 2270 204 8 6 chrX 9392971 9393446 -167580694 - L1MD3 LINE L1 -122 7873 7398 460 322 50 32 chrX 9393446 9393729 -167580411 + L2 LINE L2 2688 2975 -339 218 307 59 10 chrX 9393856 9393957 -167580183 + L2 LINE L2 3208 3313 0 805 169 0 8 chrX 9396554 9396678 -167577462 + FLAM_C SINE Alu 2 124 -19 240 35 0 0 chrX 9396682 9396711 -167577429 + (CAA)n Simple_repeat Simple_repeat 2 30 0 287 248 28 55 chrX 9397250 9397359 -167576781 + MIR SINE MIR 39 144 -64 210 71 0 0 chrX 9397581 9397609 -167576531 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 780 153 51 0 chrX 9398453 9398571 -167575569 + AluJo/FLAM SINE Alu 3 126 -186 1738 162 14 17 chrX 9398572 9398869 -167575271 + AluJo SINE Alu 1 296 -16 46 62 0 0 chrX 9399162 9399243 -167574897 + GC_rich Low_complexity Low_complexity 1 81 0 235 238 24 24 chrX 9399249 9399375 -167574765 + (CGCGG)n Simple_repeat Simple_repeat 1 126 0 1658 234 83 45 chrX 9399738 9400221 -167573919 + MLT1D LTR MaLR 2 502 -3 419 258 37 43 chrX 9400224 9400387 -167573753 + MER5A DNA MER1_type 28 189 0 2939 188 33 5 chrX 9401630 9402199 -167571941 + L1MB3 LINE L1 5590 6174 -9 605 158 75 0 chrX 9402226 9402359 -167571781 + L1MB4 LINE L1 6038 6180 0 32 26 0 0 chrX 9402394 9402433 -167571707 + AT_rich Low_complexity Low_complexity 1 39 0 256 275 44 0 chrX 9402809 9402900 -167571240 - LTR33 LTR ERVL -400 121 27 30 45 0 0 chrX 9402909 9402953 -167571187 + AT_rich Low_complexity Low_complexity 1 44 0 2191 144 14 11 chrX 9403787 9404148 -167569992 - L1MA8 LINE L1 -4 6287 5926 571 207 8 8 chrX 9404633 9404754 -167569386 - MER96B DNA MER1_type? 0 417 297 2175 103 0 0 chrX 9404791 9405099 -167569041 - AluSx SINE Alu 0 308 1 254 253 162 0 chrX 9405181 9405335 -167568805 - MER96B DNA MER1_type? -238 179 1 541 188 26 8 chrX 9405702 9405819 -167568321 + L1MB7 LINE L1 6057 6175 -9 22 35 0 0 chrX 9406644 9406673 -167567467 + AT_rich Low_complexity Low_complexity 1 29 0 784 230 32 0 chrX 9406868 9407055 -167567085 - MER20B DNA MER1_type -25 194 2 224 326 97 14 chrX 9407067 9407211 -167566929 - MIR SINE MIR -43 219 64 1010 247 34 8 chrX 9407281 9407548 -167566592 + L1MD2 LINE L1 5571 5844 -515 1814 152 3 10 chrX 9407549 9407839 -167566301 + AluJo SINE Alu 1 288 -24 270 0 0 0 chrX 9407839 9407869 -167566271 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 249 294 0 24 chrX 9407869 9407954 -167566186 + L1MC4 LINE L1 6615 6697 -1345 259 210 16 0 chrX 9407954 9408016 -167566124 - LTR66 LTR ERVL -171 439 377 733 251 72 78 chrX 9408016 9408240 -167565900 + L1ME1 LINE L1 5855 6037 -129 1820 163 3 10 chrX 9408240 9408535 -167565605 + AluJb SINE Alu 1 293 -19 733 251 72 78 chrX 9408535 9408645 -167565495 + L1ME1 LINE L1 6037 6146 -20 716 212 206 21 chrX 9409553 9409742 -167564398 + MER58A DNA MER1_type 1 224 0 1303 206 0 0 chrX 9409746 9409979 -167564161 - AluJo SINE Alu -79 233 1 235 341 44 7 chrX 9412028 9412163 -167561977 - LTR16B LTR ERVL -158 306 167 1547 181 88 9 chrX 9413103 9413439 -167560701 + MLT1A1 LTR MaLR 1 455 -2 1661 107 133 125 chrX 9414437 9414812 -167559328 + MER83B LTR ERV1 1 378 0 23125 115 142 62 chrX 9415411 9420975 -167553165 + L1PA7 LINE L1 12 6037 -117 37 0 0 0 chrX 9421341 9421378 -167552762 + AT_rich Low_complexity Low_complexity 1 37 0 2005 115 0 67 chrX 9423309 9423446 -167550694 + AluSc SINE Alu 1 146 -163 2379 98 0 3 chrX 9423446 9423753 -167550387 + AluSg SINE Alu 1 306 -4 2005 115 0 67 chrX 9423753 9423945 -167550195 + AluSc SINE Alu 146 308 -1 541 151 8 14 chrX 9424121 9424224 -167549916 - L1M2 LINE L1 -402 5749 5676 256 114 0 0 chrX 9424224 9424268 -167549872 - Alu SINE Alu 0 300 257 568 67 0 13 chrX 9424268 9424343 -167549797 - L1P5 LINE L1 -463 5688 5615 2988 103 15 5 chrX 9424343 9424742 -167549398 + L1PB1 LINE L1 5739 6150 -1 22 0 0 0 chrX 9425756 9425778 -167548362 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chrX 9425778 9425805 -167548335 + (GA)n Simple_repeat Simple_repeat 2 28 0 523 168 75 65 chrX 9425946 9426053 -167548087 + AluJo SINE Alu 17 124 -188 258 32 0 0 chrX 9426057 9426088 -167548052 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1032 198 20 0 chrX 9427057 9427254 -167546886 + AluJo SINE Alu 110 310 -2 259 291 0 23 chrX 9427285 9427371 -167546769 + L2 LINE L2 1702 1785 -1529 343 334 126 26 chrX 9427405 9427655 -167546485 - L2 LINE L2 -816 2498 2204 2893 143 5 20 chrX 9427655 9428096 -167546044 + Tigger2a DNA MER2_type 1 434 0 343 334 126 26 chrX 9428096 9428186 -167545954 - L2 LINE L2 -1110 2204 2124 355 290 64 58 chrX 9428354 9428699 -167545441 - HAL1b LINE L1 -671 677 331 308 228 24 138 chrX 9429311 9429478 -167544662 + L1MEd LINE L1 1465 1612 -4918 295 283 96 18 chrX 9429542 9429708 -167544432 + L1MEd LINE L1 1654 1832 -4708 28 0 0 0 chrX 9429957 9429985 -167544155 + AT_rich Low_complexity Low_complexity 1 28 0 346 245 151 28 chrX 9430073 9430285 -167543855 + L1MEd LINE L1 2325 2562 -3978 235 360 70 3 chrX 9430322 9430622 -167543518 + L1MEd LINE L1 2693 3012 -3528 389 298 7 0 chrX 9430681 9430822 -167543318 + L1MEd LINE L1 3187 3328 -3212 335 213 0 0 chrX 9431380 9431440 -167542700 - MER58A DNA MER1_type -11 213 154 547 191 9 29 chrX 9431440 9431545 -167542595 - MER58A DNA MER1_type -3 104 2 2087 150 31 6 chrX 9431695 9432021 -167542119 + MER2 DNA MER2_type 12 345 0 429 55 0 0 chrX 9432326 9432381 -167541759 - MLT2A2 LTR ERVL 0 453 399 189 0 0 0 chrX 9432381 9432402 -167541738 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 286 61 41 0 chrX 9432401 9432450 -167541690 + (TA)n Simple_repeat Simple_repeat 2 52 0 594 109 0 0 chrX 9432692 9432802 -167541338 + (G)n Simple_repeat Simple_repeat 1 110 0 274 141 0 77 chrX 9432803 9432882 -167541258 + (CGGGGG)n Simple_repeat Simple_repeat 1 72 0 306 157 65 19 chrX 9432932 9433040 -167541100 + (CG)n Simple_repeat Simple_repeat 1 113 0 21 36 0 0 chrX 9433055 9433083 -167541057 + GC_rich Low_complexity Low_complexity 1 28 0 2725 240 12 7 chrX 9433885 9434259 -167539881 + L1MEd LINE L1 4181 4562 -1978 565 91 13 0 chrX 9434259 9434336 -167539804 + MADE1 DNA Mariner 1 78 -2 2725 240 12 7 chrX 9434336 9434698 -167539442 + L1MEd LINE L1 4562 4921 -1619 5027 161 3 6 chrX 9434798 9436054 -167538086 + L1PA16 LINE L1 4923 6183 0 3453 165 28 18 chrX 9436278 9436992 -167537148 - L1MA7 LINE L1 0 6291 5571 479 180 0 0 chrX 9436999 9437088 -167537052 - L1MA7 LINE L1 -815 5476 5388 1330 147 49 0 chrX 9437095 9437319 -167536821 - Tigger3(Golem) DNA MER2_type 0 3038 2804 4246 213 76 31 chrX 9437319 9438547 -167535593 - L1MA7 LINE L1 -1193 4953 3671 775 224 54 18 chrX 9438891 9439114 -167535026 - MER46C DNA MER2_type -1 337 107 894 66 0 0 chrX 9439277 9439383 -167534757 + AluY SINE Alu 27 132 -179 25 0 0 0 chrX 9440008 9440033 -167534107 + AT_rich Low_complexity Low_complexity 1 25 0 234 0 0 0 chrX 9440672 9440698 -167533442 + (CA)n Simple_repeat Simple_repeat 2 27 0 283 260 0 13 chrX 9440771 9440848 -167533292 + L1M3c LINE L1 949 1024 -5117 808 237 32 41 chrX 9440872 9441265 -167532875 + L1M4 LINE L1 936 1742 -4729 2376 141 70 7 chrX 9441783 9442186 -167531954 - MSTA LTR MaLR 0 428 1 2198 89 3 0 chrX 9442736 9443027 -167531113 + AluSp SINE Alu 9 300 -13 798 257 69 5 chrX 9443156 9443358 -167530782 - MIR SINE MIR -42 220 6 34 72 0 0 chrX 9443639 9443708 -167530432 + AT_rich Low_complexity Low_complexity 1 69 0 4859 110 12 8 chrX 9444158 9444904 -167529236 - L1PA15 LINE L1 -13 6152 5404 1334 152 33 56 chrX 9444904 9445207 -167528933 + THE1C LTR MaLR 1 296 -79 301 111 28 139 chrX 9445206 9445278 -167528862 + MER84 LTR ERVI 11 74 -433 * 1414 214 105 21 chrX 9445278 9445745 -167528395 + MER84 LTR ERV1 2 507 0 2032 143 68 0 chrX 9446187 9446552 -167527588 - MLT1B LTR MaLR 0 390 1 344 296 138 50 chrX 9446741 9447080 -167527060 - L1M2 LINE L1 -5484 1365 757 324 59 137 0 chrX 9447268 9447421 -167526719 + (TA)n Simple_repeat Simple_repeat 2 175 0 2539 103 25 10 chrX 9447692 9448090 -167526050 - MLT2A1 LTR ERVL -40 404 1 1110 160 19 9 chrX 9449412 9449464 -167524676 - MER20 DNA MER1_type 0 219 169 207 0 0 0 chrX 9449464 9449487 -167524653 + (TG)n Simple_repeat Simple_repeat 1 23 0 1110 160 19 9 chrX 9449487 9449647 -167524493 - MER20 DNA MER1_type -50 169 5 281 268 108 84 chrX 9450125 9450310 -167523830 + HAL1 LINE L1 1234 1413 -1094 2839 102 21 37 chrX 9450310 9450743 -167523397 - MSTC LTR MaLR 0 428 3 281 268 108 84 chrX 9450743 9450983 -167523157 + HAL1 LINE L1 1413 1669 -838 408 297 103 20 chrX 9451381 9451752 -167522388 + L1M4 LINE L1 2443 2851 -3689 383 290 100 65 chrX 9452315 9452465 -167521675 + L1M4 LINE L1 4944 5087 -1453 1722 143 23 7 chrX 9452465 9452766 -167521374 + AluY SINE Alu 1 306 -5 383 290 100 65 chrX 9452766 9452894 -167521246 + L1M4 LINE L1 5087 5232 -1308 432 200 10 0 chrX 9455167 9455267 -167518873 + MER97c DNA MER1_type? 71 171 -919 2334 81 0 19 chrX 9456230 9456539 -167517601 + AluSx SINE Alu 1 303 -9 297 0 0 0 chrX 9456553 9456586 -167517554 + (TG)n Simple_repeat Simple_repeat 2 34 0 670 124 16 8 chrX 9457094 9457215 -167516925 + CT-rich Low_complexity Low_complexity 4 125 0 852 174 0 0 chrX 9457220 9457358 -167516782 - FLAM_C SINE Alu -5 138 1 608 150 44 7 chrX 9458610 9458835 -167515305 + AluJo SINE Alu 1 282 -30 186 43 0 0 chrX 9458837 9458860 -167515280 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1916 148 22 19 chrX 9459124 9459483 -167514657 + MLT1A1 LTR MaLR 6 365 0 207 196 22 0 chrX 9459519 9459565 -167514575 + (CA)n Simple_repeat Simple_repeat 1 47 0 473 250 29 15 chrX 9459888 9460024 -167514116 + Charlie8 DNA MER1_type 40 177 -2240 215 296 42 28 chrX 9460332 9460403 -167513737 + L2 LINE L2 2407 2478 -836 * 335 296 138 33 chrX 9460402 9460554 -167513586 - L2 LINE L2 -283 3030 2863 252 0 0 0 chrX 9460599 9460627 -167513513 + (TG)n Simple_repeat Simple_repeat 2 29 0 458 262 81 27 chrX 9462364 9462513 -167511627 + MIR SINE MIR 28 184 -78 1597 300 94 31 chrX 9464770 9465596 -167508544 + L2 LINE L2 472 1349 -1965 367 318 117 7 chrX 9465750 9465904 -167508236 - MIR SINE MIR -84 178 8 291 205 84 0 chrX 9468151 9468234 -167505906 - MER58B DNA MER1_type -3 338 249 257 291 60 8 chrX 9468269 9468403 -167505737 - HAL1b LINE L1 -4 1344 1204 1010 143 10 54 chrX 9468413 9468616 -167505524 - MER47A DNA MER2_type -1 365 172 911 196 29 6 chrX 9468630 9468803 -167505337 + FRAM SINE Alu 1 176 0 781 168 6 52 chrX 9468818 9468991 -167505149 - MER47A DNA MER2_type -200 166 2 381 265 56 37 chrX 9469009 9469333 -167504807 - HAL1b LINE L1 -187 1161 832 22 0 0 0 chrX 9469344 9469366 -167504774 + AT_rich Low_complexity Low_complexity 1 22 0 300 313 16 39 chrX 9469396 9469578 -167504562 - HAL1b LINE L1 -630 718 541 482 190 98 15 chrX 9469581 9469726 -167504414 + MLT1G1 LTR MaLR 213 415 -180 461 286 8 16 chrX 9470180 9470306 -167503834 + L2 LINE L2 3187 3311 -2 728 207 67 0 chrX 9471468 9471632 -167502508 - MER58A DNA MER1_type -15 209 35 255 309 0 0 chrX 9472110 9472191 -167501949 + Tigger3(Golem) DNA MER2_type 1 81 -2948 680 193 0 0 chrX 9472197 9472316 -167501824 + Tigger3(Golem) DNA MER2_type 2909 3027 -2 1714 162 67 63 chrX 9472506 9472750 -167501390 - MLT1C LTR MaLR -2 465 217 2070 70 4 0 chrX 9472750 9473020 -167501120 - L1PA8A LINE L1 -1 6130 5860 1714 162 67 63 chrX 9473020 9473238 -167500902 - MLT1C LTR MaLR -250 217 1 409 274 83 81 chrX 9474442 9474719 -167499421 - MLT1H LTR MaLR -142 407 127 1853 166 157 18 chrX 9474719 9475159 -167498981 + MLT1D LTR MaLR 5 505 0 409 274 83 81 chrX 9475159 9475253 -167498887 - MLT1H LTR MaLR -422 127 35 2065 172 53 47 chrX 9476064 9476534 -167497606 - MLT1D LTR MaLR -2 503 31 226 318 37 19 chrX 9476889 9476996 -167497144 + MIR3 SINE MIR 72 180 -28 1965 193 31 84 chrX 9477008 9477557 -167496583 - MLT2B1 LTR ERVL 0 520 1 207 69 0 0 chrX 9478806 9478835 -167495305 + (CA)n Simple_repeat Simple_repeat 2 30 0 185 363 59 0 chrX 9479416 9479518 -167494622 - MIR SINE MIR -121 141 34 216 305 191 9 chrX 9479823 9479928 -167494212 + L2 LINE L2 3141 3264 -8 486 261 34 45 chrX 9480576 9480752 -167493388 - MIR SINE MIR 0 262 89 342 286 10 0 chrX 9480886 9480984 -167493156 - MIR SINE MIR -130 132 34 342 0 0 0 chrX 9482261 9482299 -167491841 + (CA)n Simple_repeat Simple_repeat 2 39 0 1317 210 67 67 chrX 9482356 9482494 -167491646 - MER67D LTR ERV1 -3 511 374 1413 158 102 35 chrX 9482494 9482778 -167491362 + AluJo SINE Alu 1 303 -9 1317 210 67 67 chrX 9482778 9483086 -167491054 - MER67D LTR ERV1 -139 375 65 933 166 17 11 chrX 9483087 9483268 -167490872 + MLT1A1 LTR MaLR 5 186 -179 257 226 107 0 chrX 9483265 9483349 -167490791 + MLT1F1 LTR MaLR 475 567 0 * 245 296 69 84 chrX 9483523 9483726 -167490414 + L2 LINE L2 2830 3029 -243 298 316 49 31 chrX 9483822 9484047 -167490093 - L2 LINE L2 -556 2758 2530 452 319 35 90 chrX 9484048 9484483 -167489657 - L2 LINE L2 -1115 2199 1789 427 306 69 21 chrX 9484654 9485072 -167489068 + L1ME LINE L1 4077 4514 -1632 21 36 0 0 chrX 9485192 9485220 -167488920 + AT_rich Low_complexity Low_complexity 1 28 0 319 336 70 50 chrX 9485388 9485649 -167488491 + L1ME LINE L1 4943 5197 -1065 480 60 12 24 chrX 9485649 9485732 -167488408 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 319 336 70 50 chrX 9485732 9486009 -167488131 + L1ME LINE L1 5197 5504 -758 249 289 12 0 chrX 9486023 9486106 -167488034 + L1ME LINE L1 5576 5659 -503 320 245 237 7 chrX 9487069 9487208 -167486932 - MIR SINE MIR -8 254 84 41 82 0 0 chrX 9487386 9487483 -167486657 + AT_rich Low_complexity Low_complexity 1 97 0 426 316 124 0 chrX 9488261 9488470 -167485670 + LTR16C LTR ERVL 203 437 -54 226 290 179 12 chrX 9488541 9488703 -167485437 + L2 LINE L2 3113 3301 -12 4518 82 5 16 chrX 9490047 9490731 -167483409 + L1PB2 LINE L1 5519 6195 0 904 180 90 122 chrX 9490771 9491148 -167482992 - MLT1A1 LTR MaLR 0 365 1 24 32 0 0 chrX 9491336 9491367 -167482773 + AT_rich Low_complexity Low_complexity 1 31 0 378 0 0 0 chrX 9491478 9491520 -167482620 + (TA)n Simple_repeat Simple_repeat 1 42 0 2092 163 5 14 chrX 9492182 9492550 -167481590 - MLT1A1 LTR MaLR 0 365 1 1559 182 54 11 chrX 9493421 9493701 -167480439 + AluJo SINE Alu 1 292 -20 623 195 24 61 chrX 9494543 9494616 -167479524 + MER5A DNA MER1_type 21 95 -94 2112 152 30 25 chrX 9494616 9494977 -167479163 - THE1B LTR MaLR 0 364 2 623 195 24 61 chrX 9494977 9495067 -167479073 + MER5A DNA MER1_type 95 178 -11 2225 190 29 45 chrX 9495554 9496064 -167478076 - MLT1D LTR MaLR 0 505 4 308 256 75 8 chrX 9497159 9497292 -167476848 + LTR33 LTR ERVL 24 165 -356 256 237 40 0 chrX 9497847 9497923 -167476217 + MIR SINE MIR 125 203 -59 397 177 23 15 chrX 9497931 9498061 -167476079 + CT-rich Low_complexity Low_complexity 2 132 0 296 365 55 20 chrX 9500035 9500235 -167473905 + L2 LINE L2 2841 3047 -266 1794 179 81 20 chrX 9500552 9500959 -167473181 + MSTB1 LTR MaLR 1 432 0 468 286 42 75 chrX 9501245 9501553 -167472587 - L1ME LINE L1 -532 5621 5324 217 186 23 0 chrX 9501667 9501710 -167472430 + A-rich Low_complexity Low_complexity 5 48 0 302 287 45 13 chrX 9501752 9501909 -167472231 - L1ME LINE L1 -1529 4600 4439 253 177 42 42 chrX 9501993 9502089 -167472051 - L1ME LINE L1 -2348 3781 3686 250 200 0 31 chrX 9502096 9502161 -167471979 - L1MB8 LINE L1 -2 6176 6114 660 292 0 0 chrX 9502163 9502317 -167471823 + FRAM SINE Alu 1 152 -24 832 196 91 5 chrX 9502347 9502546 -167471594 - L1MB8 LINE L1 -53 6125 5910 320 330 62 16 chrX 9502554 9502748 -167471392 - L1ME LINE L1 -2458 3671 3469 464 312 88 37 chrX 9502765 9503118 -167471022 + L1 LINE L1 3825 4195 -1951 1877 170 6 12 chrX 9503120 9503461 -167470679 - MER7A DNA MER2_type -9 337 1 344 331 54 14 chrX 9503461 9503609 -167470531 + L1 LINE L1 4205 4358 -1788 319 341 119 59 chrX 9503660 9504205 -167469935 - L1ME LINE L1 -5503 616 39 358 74 19 0 chrX 9504274 9504328 -167469812 - Alu SINE Alu -1 301 247 1061 155 133 0 chrX 9504384 9504610 -167469530 + LTR47A LTR ERVL 197 452 0 2052 217 78 25 chrX 9504768 9505322 -167468818 + MLT1E LTR MaLR 11 593 0 188 317 83 0 chrX 9505811 9505871 -167468269 - L2 LINE L2 -1 3271 3207 1287 254 60 9 chrX 9506170 9506604 -167467536 + MLT1C LTR MaLR 12 467 0 360 0 0 0 chrX 9506976 9507016 -167467124 + (CA)n Simple_repeat Simple_repeat 2 41 0 879 214 29 29 chrX 9508348 9508554 -167465586 - MER3 DNA MER1_type 0 209 4 2243 108 0 3 chrX 9509090 9509397 -167464743 + AluSq SINE Alu 1 306 -7 317 303 68 8 chrX 9510768 9510900 -167463240 + MIR SINE MIR 60 199 -63 494 151 0 0 chrX 9511266 9511352 -167462788 - MIR SINE MIR -129 133 48 229 257 0 0 chrX 9511546 9511616 -167462524 + (ATG)n Simple_repeat Simple_repeat 3 72 0 300 358 106 6 chrX 9513040 9513219 -167460921 - L3 LINE CR1 -458 1119 923 323 351 55 25 chrX 9513425 9513627 -167460513 + MIR SINE MIR 46 253 -9 972 207 103 0 chrX 9514206 9514409 -167459731 - MER58A DNA MER1_type 0 224 1 461 287 8 0 chrX 9514411 9514533 -167459607 + L2 LINE L2 3191 3313 0 1501 194 110 11 chrX 9514670 9515042 -167459098 + MLT2C2 LTR ERVL 1 409 -55 577 136 30 8 chrX 9515052 9515184 -167458956 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 23 0 0 0 chrX 9515860 9515883 -167458257 + AT_rich Low_complexity Low_complexity 1 23 0 881 138 15 0 chrX 9516460 9516590 -167457550 - FLAM_C SINE Alu -11 132 1 1545 209 146 75 chrX 9517436 9518047 -167456093 - MLT1E1 LTR MaLR 0 654 1 1146 206 12 8 chrX 9518377 9518624 -167455516 - MLT1D LTR MaLR 0 505 258 822 225 47 36 chrX 9518625 9518901 -167455239 - LTR24C LTR ERV1 0 635 291 906 158 68 0 chrX 9518902 9519048 -167455092 + FRAM SINE Alu 1 155 -21 1112 144 93 84 chrX 9519052 9519386 -167454754 - LTR24C LTR ERV1 -298 337 1 547 238 6 55 chrX 9519391 9519572 -167454568 - MLT1D LTR MaLR -258 247 76 * 638 220 0 68 chrX 9519483 9519660 -167454480 - MLT2C1 LTR ERVL -232 165 1 2318 81 0 0 chrX 9521341 9521626 -167452514 - AluSp SINE Alu -9 304 20 227 231 0 0 chrX 9521647 9521686 -167452454 + L2 LINE L2 3208 3246 -26 231 342 99 12 chrX 9521764 9521925 -167452215 - MIR SINE MIR -54 208 34 333 243 7 13 chrX 9522163 9522315 -167451825 + GA-rich Low_complexity Low_complexity 2 152 0 253 303 133 36 chrX 9522467 9522662 -167451478 - MIR SINE MIR -18 244 31 904 114 0 0 chrX 9522797 9522920 -167451220 - AluSp/q SINE Alu -18 295 173 248 260 115 77 chrX 9523118 9523275 -167450865 + LTR16A1 LTR ERVL 214 384 -73 2267 92 7 0 chrX 9523275 9523579 -167450561 - AluSx SINE Alu -6 306 1 248 260 115 77 chrX 9523579 9523656 -167450484 + LTR16A1 LTR ERVL 384 457 0 1099 86 0 0 chrX 9523688 9523827 -167450313 - AluSg/x SINE Alu -13 297 159 225 65 0 0 chrX 9524810 9524841 -167449299 + (CA)n Simple_repeat Simple_repeat 1 31 0 2099 224 73 32 chrX 9525656 9526246 -167447894 - MLT1E2 LTR MaLR -12 614 1 220 254 17 0 chrX 9527876 9527935 -167446205 + (TA)n Simple_repeat Simple_repeat 2 61 0 938 164 13 6 chrX 9527939 9528098 -167446042 + FRAM SINE Alu 1 154 -22 753 204 47 13 chrX 9528423 9528658 -167445482 + LTR37A LTR ERV1 184 426 0 23 0 0 0 chrX 9528788 9528811 -167445329 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 9529528 9529551 -167444589 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrX 9529690 9529723 -167444417 + AT_rich Low_complexity Low_complexity 1 33 0 511 321 126 40 chrX 9530253 9530942 -167443198 - L2 LINE L2 -242 3030 2262 756 243 5 36 chrX 9530995 9531217 -167442923 - MER58A DNA MER1_type -3 221 7 1294 222 21 21 chrX 9531754 9532042 -167442098 + AluJo SINE Alu 1 288 -24 193 340 75 38 chrX 9532445 9532551 -167441589 - L2 LINE L2 -1 3271 3162 234 323 82 62 chrX 9533733 9534024 -167440116 + L2 LINE L2 3017 3313 0 23 33 0 0 chrX 9534060 9534090 -167440050 + AT_rich Low_complexity Low_complexity 1 30 0 1275 279 83 2 chrX 9534136 9534732 -167439408 + L1ME3 LINE L1 5524 6162 -2 1024 167 44 31 chrX 9535467 9535694 -167438446 - L1MB4 LINE L1 -5 6175 5946 432 128 0 0 chrX 9535948 9536026 -167438114 + (TG)n Simple_repeat Simple_repeat 1 78 0 2468 79 3 0 chrX 9536592 9536895 -167437245 - AluSx SINE Alu -8 304 1 306 244 116 23 chrX 9538448 9538534 -167435606 + L2 LINE L2 3148 3241 -31 309 135 0 0 chrX 9539905 9539957 -167434183 + (CA)n Simple_repeat Simple_repeat 2 53 0 213 39 0 0 chrX 9540198 9540224 -167433916 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2274 88 0 0 chrX 9540224 9540509 -167433631 - AluSq SINE Alu -28 285 1 989 290 17 60 chrX 9541493 9541929 -167432211 - L1ME3A LINE L1 -57 6113 5712 715 189 16 0 chrX 9541929 9542056 -167432084 - L1MB5 LINE L1 -11 6163 6035 989 290 17 60 chrX 9542056 9542191 -167431949 - L1ME3A LINE L1 -458 5712 5573 379 227 19 58 chrX 9542213 9542367 -167431773 - L1ME4a LINE L1 -6 6115 5968 791 268 60 23 chrX 9542443 9542742 -167431398 - L1ME4a LINE L1 -289 5832 5523 334 352 15 15 chrX 9544094 9544293 -167429847 + L1MC5 LINE L1 6972 7170 -791 342 288 94 43 chrX 9544521 9544990 -167429150 + L1MC5 LINE L1 7261 7753 -208 367 265 24 0 chrX 9545002 9545085 -167429055 + MER81 DNA DNA 26 110 -4 1994 130 0 3 chrX 9545120 9545432 -167428708 + AluSx SINE Alu 1 311 0 842 129 7 0 chrX 9547199 9547339 -167426801 + (ATG)n Simple_repeat Simple_repeat 3 143 0 323 78 20 0 chrX 9548879 9548930 -167425210 + (TA)n Simple_repeat Simple_repeat 1 52 0 369 0 0 0 chrX 9548943 9548984 -167425156 + (TG)n Simple_repeat Simple_repeat 1 41 0 423 56 0 0 chrX 9549646 9549700 -167424440 + (ATG)n Simple_repeat Simple_repeat 3 56 0 22 35 0 0 chrX 9551105 9551134 -167423006 + AT_rich Low_complexity Low_complexity 1 29 0 489 76 0 0 chrX 9551311 9551377 -167422763 + (TG)n Simple_repeat Simple_repeat 1 66 0 1867 234 21 42 chrX 9551946 9552596 -167421544 - Charlie2a DNA MER1_type 0 2862 2226 911 186 62 38 chrX 9552640 9552850 -167421290 - MER20 DNA MER1_type -3 216 2 3244 233 82 49 chrX 9552859 9553182 -167420958 - Charlie2a DNA MER1_type -916 1946 1635 1328 182 60 43 chrX 9553182 9553484 -167420656 + AluJo SINE Alu 1 307 -5 3244 233 82 49 chrX 9553484 9554593 -167419547 - Charlie2a DNA MER1_type -1227 1635 404 284 351 47 12 chrX 9554636 9554807 -167419333 - HAL1 LINE L1 -2314 193 17 878 230 14 23 chrX 9555077 9555294 -167418846 + MER58A DNA MER1_type 4 218 -6 514 147 301 28 chrX 9555700 9555843 -167418297 + MER53 DNA DNA 5 186 -3 1615 186 34 8 chrX 9556023 9556434 -167417706 + LTR19A LTR ERV1 1 478 -8 229 229 0 0 chrX 9556543 9556591 -167417549 + L2 LINE L2 3257 3304 -9 2183 113 0 0 chrX 9556922 9557215 -167416925 + AluSx SINE Alu 1 293 -19 372 273 117 0 chrX 9557228 9557356 -167416784 + MIR SINE MIR 13 155 -107 3334 215 171 4 chrX 9557411 9558324 -167415816 + Tigger6a DNA MER2_type 2 1066 -17 438 20 0 0 chrX 9558356 9558407 -167415733 + (TG)n Simple_repeat Simple_repeat 2 52 0 610 311 68 0 chrX 9558935 9559170 -167414970 + MIR SINE MIR 2 252 -10 276 273 40 30 chrX 9559317 9559416 -167414724 + Charlie2 DNA MER1_type 1 100 -2762 249 194 26 58 chrX 9559489 9559644 -167414496 + (TAA)n Simple_repeat Simple_repeat 2 151 0 249 319 15 0 chrX 9560542 9560649 -167413491 + MIR SINE MIR 51 163 -45 187 189 54 0 chrX 9560660 9560697 -167413443 + L2 LINE L2 3265 3303 -10 283 349 140 29 chrX 9560724 9561174 -167412966 + L2 LINE L2 2175 2674 -640 895 192 77 24 chrX 9561454 9561662 -167412478 - MER20 DNA MER1_type 0 219 1 203 347 0 14 chrX 9562103 9562175 -167411965 + L2 LINE L2 3241 3311 -2 216 67 0 0 chrX 9562177 9562207 -167411933 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chrX 9562406 9562427 -167411713 + AT_rich Low_complexity Low_complexity 1 21 0 911 137 8 8 chrX 9563426 9563557 -167410583 - FLAM_C SINE Alu -2 131 1 243 0 0 0 chrX 9564658 9564685 -167409455 + (GA)n Simple_repeat Simple_repeat 2 28 0 1904 189 58 11 chrX 9564721 9565101 -167409039 + MER77 LTR ERV1 2 399 -206 1762 137 22 4 chrX 9565367 9565682 -167408458 - AluSx SINE Alu 0 320 1 2210 111 0 3 chrX 9566277 9566584 -167407556 + AluSx SINE Alu 5 310 -2 446 235 5 59 chrX 9567488 9567675 -167406465 + G-rich Low_complexity Low_complexity 3 179 0 465 225 5 59 chrX 9568603 9568790 -167405350 + G-rich Low_complexity Low_complexity 3 179 0 1532 107 19 0 chrX 9570587 9570802 -167403338 - L1PA15 LINE L1 -6 6159 5941 402 108 0 0 chrX 9573049 9573123 -167401017 + (CAG)n Simple_repeat Simple_repeat 2 75 0 846 183 0 0 chrX 9573136 9573305 -167400835 + GA-rich Low_complexity Low_complexity 3 171 0 452 284 185 30 chrX 9573439 9573801 -167400339 - L2 LINE L2 -2025 1289 872 557 268 44 16 chrX 9573824 9574007 -167400133 + MIR SINE MIR 1 188 -74 648 260 11 6 chrX 9574083 9574264 -167399876 - L2 LINE L2 -2464 850 669 820 109 78 8 chrX 9575010 9575138 -167399002 + MER85 DNA T2_type 3 139 0 198 360 120 28 chrX 9575797 9576047 -167398093 + L2 LINE L2 2393 2665 -649 2336 88 0 3 chrX 9577610 9577904 -167396236 + AluSx SINE Alu 2 294 -18 1500 210 14 0 chrX 9579155 9579450 -167394690 - AluJo SINE Alu -13 299 1 1960 169 33 8 chrX 9579450 9579818 -167394322 + L1MA8 LINE L1 5909 6285 -6 1208 261 24 62 chrX 9579848 9580315 -167393825 - MLT1D LTR MaLR -54 451 3 815 168 0 0 chrX 9580368 9580487 -167393653 + FLAM_C SINE Alu 5 123 -20 1250 148 5 24 chrX 9580767 9580977 -167393163 - AluJo SINE Alu -106 206 1 1106 191 0 0 chrX 9580992 9581303 -167392837 - AluJo SINE Alu 0 405 95 34 65 0 0 chrX 9581425 9581487 -167392653 + AT_rich Low_complexity Low_complexity 1 62 0 27 0 0 0 chrX 9582580 9582607 -167391533 + AT_rich Low_complexity Low_complexity 1 27 0 677 142 124 9 chrX 9582612 9582725 -167391415 - AluJb SINE Alu -185 127 2 30 27 0 0 chrX 9583181 9583218 -167390922 + AT_rich Low_complexity Low_complexity 1 37 0 2659 106 3 8 chrX 9583218 9583587 -167390553 - L1PB1 LINE L1 -3 6148 5782 1255 63 32 53 chrX 9583649 9583838 -167390302 - L1PB1 LINE L1 -360 5791 5607 459 269 64 19 chrX 9585267 9585423 -167388717 - MIR SINE MIR -16 246 84 342 173 376 8 chrX 9585426 9585559 -167388581 - MER5A DNA MER1_type 0 189 8 185 277 0 92 chrX 9585569 9585634 -167388506 - MIR SINE MIR -184 78 20 351 67 0 0 chrX 9585807 9585852 -167388288 - L1P5 LINE L1 -532 5619 5575 2276 94 108 6 chrX 9585881 9586242 -167387898 + LTR7 LTR ERV1 11 408 -42 423 0 0 0 chrX 9586244 9586291 -167387849 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 632 332 99 42 chrX 9586696 9587121 -167387019 + L1MC4a LINE L1 5521 5969 -1839 260 279 13 0 chrX 9587242 9587321 -167386819 - L1MC5 LINE L1 -73 7888 7809 180 0 0 0 chrX 9587379 9587399 -167386741 + (CA)n Simple_repeat Simple_repeat 1 20 0 438 286 83 62 chrX 9587565 9588230 -167385910 - L1M4 LINE L1 -3220 2926 2248 223 182 0 0 chrX 9589317 9589361 -167384779 + T-rich Low_complexity Low_complexity 1 44 0 32661 111 26 31 chrX 9589362 9595554 -167378586 - L1PA8 LINE L1 -2 6170 12 13590 158 30 45 chrX 9595567 9597322 -167376818 + HUERS-P3 LTR ERV1 3342 5121 -2167 460 16 0 31 chrX 9597322 9597386 -167376754 + L1PA2 LINE L1 6094 6155 0 13590 158 30 45 chrX 9597386 9599184 -167374956 + HUERS-P3 LTR ERV1 5121 6945 -343 932 153 17 6 chrX 9599192 9599368 -167374772 + HUERS-P3 LTR ERV1 2388 2565 -2450 1221 140 31 0 chrX 9599522 9599715 -167374425 + HUERS-P3 LTR ERV1 8720 8918 -1 2572 210 12 58 chrX 9599718 9600337 -167373803 + LTR9 LTR ERV1 4 581 -31 3848 117 0 8 chrX 9601375 9601890 -167372250 + MER9 LTR ERVK 1 511 0 225 235 74 0 chrX 9602204 9602285 -167371855 - PABL_A LTR ERV1 -152 508 422 204 250 0 0 chrX 9603000 9603064 -167371076 + (TG)n Simple_repeat Simple_repeat 2 65 0 274 231 22 44 chrX 9603064 9603155 -167370985 - L1MC4 LINE L1 -1339 6703 6615 936 227 19 0 chrX 9603192 9603399 -167370741 - L1MC1 LINE L1 -10 6323 6113 219 325 95 16 chrX 9604239 9604365 -167369775 + MIR SINE MIR 125 260 -2 1407 196 68 18 chrX 9604384 9604721 -167369419 - L1MA4 LINE L1 -6 6294 5941 2349 100 7 0 chrX 9605110 9605419 -167368721 + AluSq SINE Alu 1 311 -2 213 39 0 0 chrX 9606915 9606941 -167367199 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 3356 205 47 7 chrX 9607062 9607769 -167366371 + L1MC1 LINE L1 5589 6323 -10 784 205 66 0 chrX 9607776 9607942 -167366198 - MER53 DNA DNA -12 177 1 772 361 53 17 chrX 9608034 9608505 -167365635 + L3 LINE CR1 1049 1536 -41 1167 142 40 44 chrX 9608567 9608792 -167365348 - L1MB7 LINE L1 -16 6168 5945 2774 152 18 7 chrX 9609105 9609545 -167364595 - MER65A LTR ERV1 0 445 1 3807 119 2 0 chrX 9610486 9611015 -167363125 + LTR26B LTR ERV1 2 531 0 673 277 75 65 chrX 9611265 9611742 -167362398 - REP3 LTR ERV -33 529 48 234 359 13 0 chrX 9612554 9612632 -167361508 - L2 LINE L2 -1 3271 3193 231 278 113 15 chrX 9613015 9613148 -167360992 - LTR33A LTR ERVL -156 367 222 225 364 56 48 chrX 9613429 9613660 -167360480 - L2 LINE L2 -189 3124 2892 359 247 141 107 chrX 9613870 9614133 -167360007 - L2 LINE L2 0 3313 3042 23 54 0 0 chrX 9614167 9614204 -167359936 + AT_rich Low_complexity Low_complexity 1 37 0 189 317 174 6 chrX 9614448 9614609 -167359531 - L2 LINE L2 -275 3038 2851 735 207 0 22 chrX 9614759 9614894 -167359246 + FLAM_C SINE Alu 2 133 0 1383 174 50 43 chrX 9616055 9616370 -167357770 - AluJb SINE Alu 0 317 1 448 294 68 28 chrX 9616383 9616560 -167357580 + HsTC2 DNA Tc2 31 214 -1684 682 261 22 27 chrX 9616568 9616790 -167357350 + HsTC2 DNA Tc2 501 721 -1177 595 280 88 68 chrX 9616885 9617339 -167356801 + HERVL40 LTR ERVL 1150 1612 -3918 1891 267 56 14 chrX 9617340 9617910 -167356230 + HERVL40 LTR ERVL 2526 3119 -2411 270 303 83 18 chrX 9618462 9618571 -167355569 + L2 LINE L2 3198 3313 0 280 169 26 0 chrX 9619066 9619143 -167354997 + (TG)n Simple_repeat Simple_repeat 2 80 0 818 221 42 32 chrX 9619241 9619458 -167354682 + MER20 DNA MER1_type 1 219 0 418 266 55 0 chrX 9619538 9619666 -167354474 + MER5B DNA MER1_type 4 138 -40 2409 61 0 29 chrX 9619713 9620024 -167354116 + AluY SINE Alu 1 302 -9 207 0 0 0 chrX 9620346 9620369 -167353771 + (TAA)n Simple_repeat Simple_repeat 1 23 0 1906 147 24 3 chrX 9620464 9620781 -167353359 + AluSx SINE Alu 2 324 0 1494 12 0 0 chrX 9620843 9621004 -167353136 + L1PA2 LINE L1 5995 6155 0 369 167 0 0 chrX 9621099 9621177 -167352963 + CT-rich Low_complexity Low_complexity 1 78 0 216 333 21 21 chrX 9621575 9621671 -167352469 + L2 LINE L2 2154 2249 -1065 3322 104 17 0 chrX 9621747 9622207 -167351933 - L1PB1 LINE L1 -185 5966 5499 1048 154 0 17 chrX 9622210 9622385 -167351755 + L1PB1 LINE L1 5978 6149 -2 180 0 0 0 chrX 9622689 9622709 -167351431 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2082 112 14 0 chrX 9623112 9623406 -167350734 - AluSx SINE Alu -14 298 1 459 334 36 17 chrX 9623548 9623850 -167350290 - L1ME3A LINE L1 -338 5832 5525 759 182 15 30 chrX 9623860 9623992 -167350148 + FLAM_A SINE Alu 1 130 -3 327 359 5 10 chrX 9624188 9624386 -167349754 - L1ME3A LINE L1 -800 5346 5150 1784 119 3 102 chrX 9624406 9624772 -167349368 - AluY SINE Alu 0 311 1 428 289 50 39 chrX 9625861 9626041 -167348099 - MIR SINE MIR -64 198 17 380 270 67 105 chrX 9626900 9627029 -167347111 + L1MDa LINE L1 1828 1960 -4605 2503 68 3 3 chrX 9627029 9627337 -167346803 + AluSp SINE Alu 1 308 -5 380 270 67 105 chrX 9627337 9627492 -167346648 + L1MDa LINE L1 1960 2126 -4439 25 31 0 0 chrX 9627529 9627561 -167346579 + AT_rich Low_complexity Low_complexity 1 32 0 437 33 0 17 chrX 9627643 9627703 -167346437 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 886 185 90 19 chrX 9628341 9628517 -167345623 - AluJo SINE Alu 0 312 117 207 0 0 0 chrX 9628517 9628540 -167345600 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 886 185 90 19 chrX 9628540 9628574 -167345566 - AluJo SINE Alu -195 117 87 1748 68 119 12 chrX 9630524 9630811 -167343329 - AluSc SINE Alu 0 314 1 1821 169 0 22 chrX 9632168 9632487 -167341653 - AluJb SINE Alu 0 312 1 420 301 19 19 chrX 9632515 9632671 -167341469 + MER5A DNA MER1_type 9 164 -25 225 269 0 0 chrX 9632678 9632745 -167341395 + A-rich Low_complexity Low_complexity 1 67 0 21 36 0 0 chrX 9633370 9633398 -167340742 + AT_rich Low_complexity Low_complexity 1 28 0 2412 61 7 0 chrX 9633745 9634038 -167340102 + AluY SINE Alu 1 295 -16 1597 143 75 14 chrX 9634342 9634622 -167339518 - MER1B DNA MER1_type -1 338 42 307 284 189 0 chrX 9634626 9634721 -167339419 - MER45 DNA AcHobo -1468 113 1 180 0 0 0 chrX 9635585 9635605 -167338535 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chrX 9636418 9636439 -167337701 + GC_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chrX 9638645 9638666 -167335474 + (T)n Simple_repeat Simple_repeat 1 21 0 2279 86 23 0 chrX 9638685 9638987 -167335153 + AluSx SINE Alu 1 309 -3 315 241 12 0 chrX 9640042 9640125 -167334015 - MIR SINE MIR -26 236 153 1197 208 44 14 chrX 9640271 9640564 -167333576 - MER45B DNA AcHobo 0 1040 739 1389 310 107 34 chrX 9640659 9641343 -167332797 - MER45C DNA AcHobo -216 737 4 351 266 0 21 chrX 9642609 9642703 -167331437 - L1MC4 LINE L1 -1337 6705 6614 315 136 0 0 chrX 9642703 9642762 -167331378 + (TA)n Simple_repeat Simple_repeat 2 60 0 229 148 49 37 chrX 9643317 9643398 -167330742 + (TA)n Simple_repeat Simple_repeat 1 82 0 2174 129 0 3 chrX 9643404 9643714 -167330426 + AluSx SINE Alu 1 309 -3 434 311 49 16 chrX 9644221 9644404 -167329736 + MER5A DNA MER1_type 1 189 0 2469 97 0 0 chrX 9644409 9644719 -167329421 + AluY SINE Alu 1 310 -1 24 32 0 0 chrX 9644959 9644990 -167329150 + AT_rich Low_complexity Low_complexity 1 31 0 2633 55 0 6 chrX 9645156 9645467 -167328673 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 9645802 9645826 -167328314 + AT_rich Low_complexity Low_complexity 1 24 0 3483 160 14 29 chrX 9646458 9647107 -167327033 + MER41B LTR ERV1 1 467 -11 1681 192 31 7 chrX 9647545 9647836 -167326304 + AluJo SINE Alu 1 298 -14 2024 131 3 32 chrX 9648726 9649064 -167325076 + AluSx SINE Alu 1 312 0 181 353 17 26 chrX 9649847 9649963 -167324177 - L2 LINE L2 0 3313 3199 1781 193 41 131 chrX 9652157 9652819 -167321321 + L1MC4 LINE L1 7299 7900 -142 256 219 24 0 chrX 9652823 9652905 -167321235 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 213 219 0 0 chrX 9652939 9652980 -167321160 + A-rich Low_complexity Low_complexity 2 42 0 973 188 45 6 chrX 9652996 9653172 -167320968 + MER58A DNA MER1_type 4 186 -38 37 52 0 0 chrX 9653259 9653317 -167320823 + AT_rich Low_complexity Low_complexity 1 58 0 832 203 91 0 chrX 9656080 9656267 -167317873 + MER3 DNA MER1_type 1 204 -5 280 230 40 0 chrX 9656725 9656799 -167317341 + LTR33A LTR ERVL 444 520 -3 1845 220 26 38 chrX 9660619 9661124 -167313016 + L1MB8 LINE L1 5680 6178 0 199 195 24 0 chrX 9661410 9661451 -167312689 + MER5A DNA MER1_type 145 186 -3 4576 118 63 34 chrX 9661970 9662727 -167311413 + MER4E LTR ERV1 1 779 0 5901 102 26 21 chrX 9662804 9663661 -167310479 + MER4D LTR ERV1 12 872 0 1550 118 45 115 chrX 9664208 9664522 -167309618 - AluSq SINE Alu -21 292 1 1037 70 7 42 chrX 9664524 9664666 -167309474 - AluSq/x SINE Alu -169 143 7 923 163 0 7 chrX 9664766 9664913 -167309227 - AluJb SINE Alu -23 289 144 2067 146 0 3 chrX 9665233 9665534 -167308606 + AluSx SINE Alu 6 305 -7 779 212 98 20 chrX 9665672 9665875 -167308265 - MER20 DNA MER1_type 0 219 1 2208 113 10 0 chrX 9666757 9667058 -167307082 + AluSq SINE Alu 1 304 -9 250 316 0 43 chrX 9667889 9668006 -167306134 - MIR SINE MIR -67 141 30 608 191 84 0 chrX 9668406 9668537 -167305603 + MER69 DNA AcHobo 6 147 -1079 1705 136 0 12 chrX 9669057 9669307 -167304833 + AluSq SINE Alu 44 290 -23 1595 168 9 58 chrX 9670514 9670841 -167303299 - AluJo SINE Alu -1 311 1 180 0 0 0 chrX 9671424 9671444 -167302696 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2094 136 0 0 chrX 9671447 9671734 -167302406 - AluSx SINE Alu -25 287 1 309 185 123 0 chrX 9672043 9672124 -167302016 + L2 LINE L2 2450 2540 -774 * 407 319 91 38 chrX 9672103 9672445 -167301695 + L2 LINE L2 2953 3312 -1 945 217 61 114 chrX 9673336 9673572 -167300568 + MER58B DNA MER1_type 1 213 -2207 3554 128 0 26 chrX 9673572 9674112 -167300028 - MER1A DNA MER1_type -1 526 1 945 217 61 114 chrX 9674112 9674235 -167299905 + MER58B DNA MER1_type 213 341 0 257 258 15 0 chrX 9674914 9674980 -167299160 + MIR SINE MIR 94 160 -102 764 289 94 61 chrX 9675459 9675982 -167298158 + MER77 LTR ERV1 55 594 -11 2387 87 10 0 chrX 9676046 9676345 -167297795 - AluSg SINE Alu -8 302 1 440 284 49 49 chrX 9676522 9676705 -167297435 - LTR16C LTR ERVL -229 262 80 1606 152 3 91 chrX 9677384 9677525 -167296615 + AluJo SINE Alu 1 102 -210 2285 88 10 10 chrX 9677525 9677822 -167296318 + AluSg SINE Alu 1 297 -13 1606 152 3 91 chrX 9677822 9677989 -167296151 + AluJo SINE Alu 102 282 -30 866 123 19 9 chrX 9677989 9678209 -167295931 + CT-rich Low_complexity Low_complexity 1 222 0 2123 141 13 0 chrX 9678209 9678507 -167295633 - AluSx SINE Alu -10 302 1 820 135 0 30 chrX 9679071 9679204 -167294936 + FLAM_C SINE Alu 1 129 -4 1395 158 4 4 chrX 9679547 9679775 -167294365 - MLT1B LTR MaLR -4 386 159 2280 140 17 13 chrX 9679776 9680165 -167293975 - MLT1B LTR MaLR 0 396 1 1667 194 3 50 chrX 9680766 9680802 -167293338 - MER58B DNA MER1_type -2094 326 290 684 257 41 0 chrX 9680802 9680973 -167293167 + MER45A DNA AcHobo 1 178 0 1667 194 3 50 chrX 9680973 9681105 -167293035 - MER58B DNA MER1_type -2130 290 153 1758 171 138 31 chrX 9681105 9681318 -167292822 + MLT1C LTR MaLR 1 190 -277 2171 91 35 7 chrX 9681318 9681633 -167292507 + AluSq SINE Alu 1 323 0 1758 171 138 31 chrX 9681633 9681837 -167292303 + MLT1C LTR MaLR 190 465 -2 1667 194 3 50 chrX 9681837 9682008 -167292132 - MER58B DNA MER1_type -2267 153 2 2771 79 94 0 chrX 9682376 9682768 -167291372 + L1PA10 LINE L1 5728 6156 -12 2443 60 0 10 chrX 9682769 9683071 -167291069 - AluY SINE Alu -12 299 1 186 43 0 0 chrX 9683162 9683185 -167290955 + (CA)n Simple_repeat Simple_repeat 1 23 0 754 296 60 3 chrX 9683590 9683907 -167290233 + L1MC4 LINE L1 6814 7148 -894 1558 178 32 41 chrX 9684498 9684813 -167289327 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 9685861 9685884 -167288256 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 609 233 0 0 chrX 9685913 9686033 -167288107 - FLAM_A SINE Alu -17 125 6 186 298 0 0 chrX 9686435 9686482 -167287658 + MIR SINE MIR 17 63 -199 2775 87 3 0 chrX 9686615 9686984 -167287156 - L1PB1 LINE L1 0 6151 5782 327 198 33 44 chrX 9686981 9687072 -167287068 - L1MC4 LINE L1 -1339 6703 6614 * 395 104 23 63 chrX 9686984 9687169 -167286971 + (TA)n Simple_repeat Simple_repeat 1 177 0 * 547 158 0 10 chrX 9687143 9687264 -167286876 - L1M1 LINE L1 -361 5790 5699 1224 225 70 0 chrX 9687772 9688088 -167286052 + L1MC2 LINE L1 5949 6286 -58 463 307 135 58 chrX 9689206 9689770 -167284370 + L2 LINE L2 2200 2806 -508 181 392 0 13 chrX 9689823 9689902 -167284238 + L2 LINE L2 2911 2988 -325 263 112 17 69 chrX 9690166 9690282 -167283858 + (TA)n Simple_repeat Simple_repeat 1 110 0 1470 139 64 0 chrX 9690375 9690655 -167283485 - L1MA8 LINE L1 -7 6284 5987 351 121 0 0 chrX 9690724 9690782 -167283358 + (CA)n Simple_repeat Simple_repeat 2 59 0 1641 81 36 0 chrX 9693072 9693294 -167280846 + MER30 DNA MER1_type 1 230 0 22 0 0 0 chrX 9693482 9693504 -167280636 + AT_rich Low_complexity Low_complexity 1 22 0 2987 82 12 0 chrX 9694278 9694683 -167279457 - L1PA10 LINE L1 -4 6164 5755 479 259 14 66 chrX 9695588 9695707 -167278433 + MER3 DNA MER1_type 4 109 -100 960 180 22 59 chrX 9695707 9695929 -167278211 - MER20 DNA MER1_type -4 215 2 479 259 14 66 chrX 9695929 9696021 -167278119 + MER3 DNA MER1_type 109 204 -5 911 90 8 8 chrX 9696043 9696177 -167277963 + L1MA1 LINE L1 6167 6300 -2 21 0 0 0 chrX 9697025 9697046 -167277094 + AT_rich Low_complexity Low_complexity 1 21 0 269 289 112 20 chrX 9697117 9697269 -167276871 + MIR SINE MIR 20 185 -77 26 0 0 0 chrX 9697809 9697835 -167276305 + AT_rich Low_complexity Low_complexity 1 26 0 587 179 24 0 chrX 9697854 9697977 -167276163 + L1MB3 LINE L1 5869 5994 -189 1172 116 6 0 chrX 9698167 9698348 -167275792 + L1MB2 LINE L1 5941 6122 -49 291 164 18 27 chrX 9698356 9698444 -167275696 - MER5A DNA MER1_type -99 90 4 2208 85 7 14 chrX 9698481 9698764 -167275376 + AluSx SINE Alu 25 305 -7 22 0 0 0 chrX 9698775 9698797 -167275343 + AT_rich Low_complexity Low_complexity 1 22 0 429 176 0 0 chrX 9698797 9698871 -167275269 - AluJ/FRAM SINE Alu -12 300 227 1050 226 49 84 chrX 9699358 9699907 -167274233 + MER34 LTR ERV1 4 533 -9 249 33 0 0 chrX 9700933 9700963 -167273177 + (CA)n Simple_repeat Simple_repeat 1 30 0 460 281 51 34 chrX 9701016 9701194 -167272946 - MIR SINE MIR -17 245 65 697 233 0 6 chrX 9701490 9701653 -167272487 + MER5A DNA MER1_type 26 187 -2 25 31 0 0 chrX 9701876 9701908 -167272232 + AT_rich Low_complexity Low_complexity 1 32 0 996 123 11 11 chrX 9704059 9704238 -167269902 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 338 184 13 0 chrX 9704238 9704314 -167269826 + GA-rich Low_complexity Low_complexity 3 79 0 2034 120 3 7 chrX 9705249 9705541 -167268599 + AluSx SINE Alu 1 291 -21 23 0 0 0 chrX 9705541 9705564 -167268576 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chrX 9706004 9706037 -167268103 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 324 0 0 0 chrX 9706172 9706208 -167267932 + (CA)n Simple_repeat Simple_repeat 2 37 0 202 262 0 33 chrX 9707799 9707860 -167266280 + T-rich Low_complexity Low_complexity 5 63 0 1511 179 45 4 chrX 9707993 9708113 -167266027 + AluJb SINE Alu 1 115 -197 207 0 0 0 chrX 9708113 9708136 -167266004 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1511 179 45 4 chrX 9708136 9708283 -167265857 + AluJb SINE Alu 115 279 -33 419 133 0 0 chrX 9708283 9708343 -167265797 - LTR7 LTR ERV1 0 450 391 222 37 0 0 chrX 9708365 9708392 -167265748 + (GA)n Simple_repeat Simple_repeat 2 28 0 2183 80 0 0 chrX 9709654 9709916 -167264224 - AluSg SINE Alu -14 296 35 605 199 79 105 chrX 9709924 9710078 -167264062 - LTR37A LTR ERV1 -14 454 297 417 39 0 0 chrX 9710078 9710129 -167264011 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 605 199 79 105 chrX 9710129 9710306 -167263834 - LTR37A LTR ERV1 -171 297 88 1326 235 37 3 chrX 9710658 9710986 -167263154 + MER58B DNA MER1_type 2 340 -1 298 254 37 15 chrX 9711029 9711140 -167263000 + LTR48B LTR ERV1 1 108 -514 860 218 58 72 chrX 9711187 9711565 -167262575 + MER39 LTR ERV1 330 584 -1 265 369 10 10 chrX 9711773 9711876 -167262264 + MIR3 SINE MIR 91 193 -15 1993 115 49 0 chrX 9712312 9712600 -167261540 - AluSc SINE Alu -7 302 1 203 290 72 29 chrX 9712694 9712763 -167261377 + L2 LINE L2 3192 3263 -9 2157 127 3 0 chrX 9712965 9713265 -167260875 + AluSq SINE Alu 1 301 -12 2054 126 0 0 chrX 9713608 9713894 -167260246 + AluSx SINE Alu 1 286 -26 180 0 0 0 chrX 9714278 9714298 -167259842 + (A)n Simple_repeat Simple_repeat 1 20 0 743 273 87 72 chrX 9714603 9715061 -167259079 - MLT1J LTR MaLR -45 466 2 193 256 0 0 chrX 9715108 9715151 -167258989 + L2 LINE L2 3210 3252 -20 1110 199 19 5 chrX 9715238 9715454 -167258686 - MER20 DNA MER1_type 0 219 1 1553 113 0 5 chrX 9715622 9715844 -167258296 + AluSg/x SINE Alu 83 303 -7 493 282 77 29 chrX 9715904 9716177 -167257963 - L2 LINE L2 -529 2785 2500 435 255 62 0 chrX 9718098 9718243 -167255897 + L1MD2 LINE L1 6194 6347 -12 21 0 0 0 chrX 9718383 9718404 -167255736 + AT_rich Low_complexity Low_complexity 1 21 0 1918 141 160 19 chrX 9718745 9719120 -167255020 - MSTA LTR MaLR 0 428 1 260 398 0 0 chrX 9719161 9719279 -167254861 + MIR SINE MIR 84 201 -61 2306 101 3 3 chrX 9719305 9719612 -167254528 + AluSq SINE Alu 1 307 -6 1373 149 108 46 chrX 9719955 9720344 -167253796 - L1MB7 LINE L1 -8 6176 5764 238 338 78 7 chrX 9721996 9722150 -167251990 - MIR SINE MIR -29 233 69 2705 91 11 3 chrX 9722491 9722852 -167251288 + THE1B LTR MaLR 1 364 0 180 295 53 11 chrX 9723281 9723376 -167250764 + MIR SINE MIR 164 262 0 1630 117 40 7 chrX 9725038 9725311 -167248829 + L1MC1 LINE L1 6051 6332 -1 242 325 36 73 chrX 9725543 9725845 -167248295 + L2 LINE L2 3023 3313 0 23 54 0 0 chrX 9726074 9726111 -167248029 + AT_rich Low_complexity Low_complexity 1 37 0 1055 187 0 0 chrX 9726157 9726355 -167247785 - MER2 DNA MER2_type -107 238 41 2139 129 0 0 chrX 9726522 9726825 -167247315 + AluSg SINE Alu 1 303 -7 7191 43 4 6 chrX 9726877 9727856 -167246284 + L1PA7 LINE L1 5177 6154 0 298 131 18 0 chrX 9727860 9727923 -167246217 + L1M1 LINE L1 5769 5837 -317 648 141 0 0 chrX 9728053 9728152 -167245988 - AluSg/x SINE Alu -9 303 205 2447 74 0 0 chrX 9728510 9728808 -167245332 - AluY SINE Alu -13 298 1 193 314 0 0 chrX 9729873 9729924 -167244216 - MIR3 SINE MIR -49 159 109 1650 199 89 28 chrX 9730600 9731028 -167243112 - MLT1C LTR MaLR -7 460 7 531 314 64 6 chrX 9731945 9732117 -167242023 + MER5A DNA MER1_type 1 182 -7 2549 77 0 0 chrX 9732180 9732491 -167241649 - AluSx SINE Alu -1 311 1 1598 157 23 47 chrX 9733849 9734148 -167239992 - AluJo SINE Alu -16 296 5 583 205 27 0 chrX 9734352 9734464 -167239676 - FLAM_A SINE Alu -17 125 11 257 67 0 44 chrX 9735437 9735482 -167238658 + (CAGAGA)n Simple_repeat Simple_repeat 4 46 0 629 182 28 45 chrX 9735523 9735699 -167238441 + MER20 DNA MER1_type 47 219 0 242 194 48 0 chrX 9736213 9736275 -167237865 + GA-rich Low_complexity Low_complexity 2 66 0 836 126 0 44 chrX 9736307 9736442 -167237698 + FLAM_C SINE Alu 1 129 -4 1274 166 9 14 chrX 9736446 9736669 -167237471 + AluJo SINE Alu 87 308 -4 820 190 6 13 chrX 9736781 9736939 -167237201 - FRAM SINE Alu -19 157 1 2025 123 0 0 chrX 9737991 9738259 -167235881 - AluSx SINE Alu -44 268 1 1379 189 9 84 chrX 9739198 9739520 -167234620 + AluJo SINE Alu 1 298 -14 272 256 58 0 chrX 9739965 9740051 -167234089 + MIR SINE MIR 118 208 -54 4862 81 59 4 chrX 9740792 9741153 -167232987 - L1PB1 LINE L1 -7 6144 5804 321 26 0 0 chrX 9741153 9741191 -167232949 + (CA)n Simple_repeat Simple_repeat 2 39 0 4862 81 59 4 chrX 9741191 9741507 -167232633 - L1PB1 LINE L1 -347 5804 5430 2325 164 12 16 chrX 9741507 9742082 -167232058 + L1PB1 LINE L1 4860 5434 -717 815 265 65 58 chrX 9742856 9743256 -167230884 - LTR16A1 LTR ERVL 0 457 55 972 136 0 4 chrX 9744089 9744346 -167229794 + (TA)n Simple_repeat Simple_repeat 1 257 0 1389 310 107 34 chrX 9745614 9746298 -167227842 + MER45C DNA AcHobo 4 737 -216 1197 208 44 14 chrX 9746393 9746686 -167227454 + MER45B DNA AcHobo 739 1040 0 315 241 12 0 chrX 9746832 9746915 -167227225 + MIR SINE MIR 153 236 -26 2266 89 23 0 chrX 9747970 9748272 -167225868 - AluSx SINE Alu -3 309 1 243 0 0 0 chrX 9748291 9748318 -167225822 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chrX 9750526 9750547 -167223593 + GC_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chrX 9751360 9751380 -167222760 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 306 284 189 0 chrX 9752244 9752339 -167221801 + MER45 DNA AcHobo 1 113 -1468 1588 146 75 14 chrX 9752343 9752623 -167221517 + MER1B DNA MER1_type 42 338 -1 2443 61 7 0 chrX 9752927 9753220 -167220920 - AluY SINE Alu -16 295 1 21 36 0 0 chrX 9753567 9753595 -167220545 + AT_rich Low_complexity Low_complexity 1 28 0 225 269 0 0 chrX 9754220 9754287 -167219853 + T-rich Low_complexity Low_complexity 1 67 0 369 301 19 19 chrX 9754294 9754450 -167219690 - MER5A DNA MER1_type -25 164 9 1842 169 0 22 chrX 9754478 9754797 -167219343 + AluJb SINE Alu 1 312 0 1783 68 119 12 chrX 9756154 9756441 -167217699 + AluSc SINE Alu 1 314 0 892 185 90 19 chrX 9758391 9758425 -167215715 + AluJo SINE Alu 87 117 -195 207 0 0 0 chrX 9758425 9758448 -167215692 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 892 185 90 19 chrX 9758448 9758624 -167215516 + AluJo SINE Alu 117 312 0 473 31 0 16 chrX 9759262 9759326 -167214814 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 25 31 0 0 chrX 9759408 9759440 -167214700 + AT_rich Low_complexity Low_complexity 1 32 0 339 297 29 106 chrX 9759493 9759632 -167214508 - L1MEc LINE L1 -4595 1801 1688 2524 68 3 3 chrX 9759632 9759940 -167214200 - AluSp SINE Alu -5 308 1 339 297 29 106 chrX 9759940 9760046 -167214094 - L1MEc LINE L1 -4708 1688 1575 377 289 50 39 chrX 9760928 9761108 -167213032 + MIR SINE MIR 17 198 -64 2038 102 3 94 chrX 9762197 9762561 -167211579 + AluSx SINE Alu 1 312 0 300 359 5 10 chrX 9762581 9762779 -167211361 + L1ME3A LINE L1 5150 5346 -800 704 187 15 30 chrX 9762973 9763107 -167211033 - FLAM_A SINE Alu -1 132 1 451 334 36 17 chrX 9763117 9763419 -167210721 + L1ME3A LINE L1 5525 5832 -338 2099 112 14 0 chrX 9763561 9763855 -167210285 + AluSx SINE Alu 1 298 -14 180 0 0 0 chrX 9764258 9764278 -167209862 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 992 154 0 17 chrX 9764582 9764757 -167209383 - L1PB1 LINE L1 -2 6149 5978 3310 104 17 0 chrX 9764760 9765220 -167208920 + L1PB1 LINE L1 5499 5966 -185 196 333 21 21 chrX 9765296 9765392 -167208748 - L2 LINE L2 -1065 2249 2154 369 167 0 0 chrX 9765790 9765868 -167208272 + GA-rich Low_complexity Low_complexity 1 78 0 1429 12 0 0 chrX 9765963 9766124 -167208016 - L1PA2 LINE L1 0 6155 5995 1927 147 24 3 chrX 9766186 9766503 -167207637 - AluSx SINE Alu 0 324 2 207 0 0 0 chrX 9766598 9766621 -167207519 + (TTA)n Simple_repeat Simple_repeat 1 23 0 2436 61 0 29 chrX 9766943 9767254 -167206886 - AluY SINE Alu -9 302 1 377 266 55 0 chrX 9767301 9767429 -167206711 - MER5B DNA MER1_type -40 138 4 749 221 42 32 chrX 9767509 9767726 -167206414 - MER20 DNA MER1_type 0 219 1 280 169 26 0 chrX 9767824 9767901 -167206239 + (CA)n Simple_repeat Simple_repeat 2 80 0 238 303 83 18 chrX 9768396 9768505 -167205635 - L2 LINE L2 0 3313 3198 1915 267 56 14 chrX 9769057 9769627 -167204513 - HERVL40 LTR ERVL -2411 3119 2526 604 286 84 64 chrX 9769628 9770082 -167204058 - HERVL40 LTR ERVL -3918 1612 1150 675 261 22 27 chrX 9770177 9770399 -167203741 - HsTC2 DNA Tc2 -1177 721 501 446 294 68 28 chrX 9770407 9770584 -167203556 - HsTC2 DNA Tc2 -1684 214 31 1394 174 50 43 chrX 9770597 9770912 -167203228 + AluJb SINE Alu 1 317 0 687 207 0 22 chrX 9772073 9772208 -167201932 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chrX 9822755 9822776 -167151364 + AT_rich Low_complexity Low_complexity 1 21 0 212 224 17 35 chrX 9824999 9825057 -167149083 + MIR SINE MIR 113 169 -93 1263 202 0 0 chrX 9825156 9825379 -167148761 + MER58A DNA MER1_type 2 224 0 250 345 76 17 chrX 9825553 9825672 -167148468 + MIR3 SINE MIR 60 185 -23 438 20 0 0 chrX 9825727 9825753 -167148387 + (TG)n Simple_repeat Simple_repeat 1 77 0 438 20 0 0 chrX 9825753 9825804 -167148336 + (TG)n Simple_repeat Simple_repeat 2 52 0 1711 201 0 22 chrX 9826132 9826450 -167147690 - AluJo SINE Alu -1 311 1 607 224 7 41 chrX 9827215 9827362 -167146778 - L2 LINE L2 0 3313 3172 1221 61 0 6 chrX 9827383 9827546 -167146594 - MLT2A2 LTR ERVL 0 453 292 2090 101 7 3 chrX 9827593 9827900 -167146240 - MLT2A2 LTR ERVL -145 308 1 1635 272 135 59 chrX 9828013 9828909 -167145231 - L2 LINE L2 -299 3014 2036 2141 124 3 13 chrX 9828909 9829215 -167144925 + AluSx SINE Alu 1 303 -9 1635 272 135 59 chrX 9829215 9829300 -167144840 - L2 LINE L2 -1277 2036 1959 3862 83 29 9 chrX 9829588 9830145 -167143995 + L1PA11 LINE L1 5606 6173 -1 1883 161 3 3 chrX 9831133 9831438 -167142702 - AluJb SINE Alu -3 309 5 2479 64 0 0 chrX 9832613 9832911 -167141229 - AluY SINE Alu -13 298 1 1939 134 44 0 chrX 9833422 9833720 -167140420 - AluJo SINE Alu -1 311 1 239 0 0 31 chrX 9834437 9834469 -167139671 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 2168 83 0 0 chrX 9834473 9834738 -167139402 - AluSx SINE Alu -25 287 23 297 240 20 40 chrX 9835723 9835873 -167138267 + (TA)n Simple_repeat Simple_repeat 1 147 0 330 195 0 0 chrX 9835873 9835950 -167138190 + (CA)n Simple_repeat Simple_repeat 2 78 0 1245 312 71 10 chrX 9836289 9836799 -167137341 + L2 LINE L2 2171 2711 -603 248 314 202 39 chrX 9837796 9838469 -167135671 + L2 LINE L2 1709 2491 -823 928 88 0 0 chrX 9840031 9840348 -167133792 + AluSx SINE Alu 1 317 0 865 151 0 0 chrX 9840525 9840651 -167133489 + FLAM_C SINE Alu 1 126 -17 2259 57 0 54 chrX 9840657 9840987 -167133153 + AluY SINE Alu 1 314 0 788 171 16 144 chrX 9841656 9841913 -167132227 + MER58A DNA MER1_type 1 224 0 545 254 8 0 chrX 9842014 9842132 -167132008 + FLAM_A SINE Alu 11 129 -13 202 231 0 39 chrX 9843213 9843265 -167130875 + L2 LINE L2 3199 3248 -24 20057 78 19 1 chrX 9843960 9847662 -167126478 - L1PA7 LINE L1 -23 6446 2680 206 118 0 0 chrX 9847684 9847718 -167126422 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2558 115 30 2 chrX 9847718 9848118 -167126022 - L1PA7 LINE L1 -6043 418 8 31 26 0 0 chrX 9848606 9848644 -167125496 + AT_rich Low_complexity Low_complexity 1 38 0 231 251 105 26 chrX 9849059 9849250 -167124890 - HsTC2 DNA Tc2 -104 1794 1589 297 127 91 0 chrX 9849280 9849335 -167124805 - HsTC2 DNA Tc2 -548 1350 1291 67 102 0 0 chrX 9849335 9849570 -167124570 + AT_rich Low_complexity Low_complexity 1 235 0 1214 279 87 19 chrX 9849616 9850237 -167123903 - L1ME3A LINE L1 -182 5988 5326 2221 116 0 0 chrX 9850289 9850581 -167123559 - AluSx SINE Alu -20 292 1 270 45 45 0 chrX 9850654 9850698 -167123442 - AluSq SINE Alu -7 296 251 1482 117 24 5 chrX 9850698 9850911 -167123229 - AluSq SINE Alu -96 217 1 1231 267 107 36 chrX 9850918 9851062 -167123078 - L1ME3A LINE L1 -983 5163 5031 2480 125 14 3 chrX 9851062 9851422 -167122718 - THE1B LTR MaLR 0 364 1 1231 267 107 36 chrX 9851422 9852500 -167121640 - L1ME3A LINE L1 -1115 5031 3854 292 275 0 0 chrX 9852518 9852598 -167121542 + MIR SINE MIR 161 240 -22 239 250 0 0 chrX 9852949 9852997 -167121143 + (CATA)n Simple_repeat Simple_repeat 1 48 0 2247 77 11 0 chrX 9854257 9854543 -167119597 + AluSg SINE Alu 1 289 -21 276 322 46 11 chrX 9854621 9854708 -167119432 - L2 LINE L2 -31 3282 3193 453 294 0 0 chrX 9855269 9855395 -167118745 + MER94 DNA DNA 5 130 -4 269 344 46 23 chrX 9855549 9855680 -167118460 - L2 LINE L2 -954 2360 2227 231 114 0 0 chrX 9856838 9856882 -167117258 + (CCTG)n Simple_repeat Simple_repeat 2 45 0 445 156 21 10 chrX 9856882 9856978 -167117162 + CT-rich Low_complexity Low_complexity 2 98 0 1830 140 0 92 chrX 9856989 9857180 -167116960 - AluJo SINE Alu 0 312 164 2302 94 19 0 chrX 9857180 9857487 -167116653 - AluSp SINE Alu 0 313 1 1830 140 0 92 chrX 9857487 9857630 -167116510 - AluJo SINE Alu -148 164 9 380 287 52 9 chrX 9857841 9857956 -167116184 - L2 LINE L2 -5 3308 3189 2279 126 0 0 chrX 9858380 9858690 -167115450 - AluSq SINE Alu -3 310 1 300 393 15 15 chrX 9859116 9859251 -167114889 - L2 LINE L2 0 3272 3138 1216 214 81 27 chrX 9859412 9859782 -167114358 + MLT1D LTR MaLR 116 505 0 202 243 54 63 chrX 9859784 9859895 -167114245 - MIR SINE MIR -68 194 85 219 253 38 164 chrX 9860338 9860477 -167113663 + L2 LINE L2 2855 3010 -303 593 253 79 0 chrX 9860477 9860667 -167113473 - MER3 DNA MER1_type -4 205 1 219 253 38 164 chrX 9860667 9860822 -167113318 + L2 LINE L2 3010 3077 -236 2306 73 6 49 chrX 9860822 9861149 -167112991 - AluSq SINE Alu 0 313 1 219 253 38 164 chrX 9861149 9861299 -167112841 + L2 LINE L2 3077 3244 -69 324 0 0 0 chrX 9864486 9864522 -167109618 + (CA)n Simple_repeat Simple_repeat 2 37 0 695 180 9 0 chrX 9864531 9864642 -167109498 - FLAM_A SINE Alu -30 112 1 810 188 0 0 chrX 9865937 9866070 -167108070 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chrX 9867511 9867532 -167106608 + AT_rich Low_complexity Low_complexity 1 21 0 291 267 20 0 chrX 9868178 9868324 -167105816 + CT-rich Low_complexity Low_complexity 3 151 0 273 197 0 0 chrX 9870544 9870605 -167103535 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 40 21 0 0 chrX 9871528 9871575 -167102565 + AT_rich Low_complexity Low_complexity 1 47 0 35 0 0 0 chrX 9871686 9871721 -167102419 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 9871815 9871850 -167102290 + AT_rich Low_complexity Low_complexity 1 35 0 1055 174 38 19 chrX 9872320 9872532 -167101608 - MER20 DNA MER1_type -3 216 1 814 154 0 29 chrX 9873438 9873574 -167100566 + FLAM_A SINE Alu 1 132 -1 1440 173 13 23 chrX 9874068 9874368 -167099772 - L1PB4 LINE L1 -76 6080 5784 1322 139 46 8 chrX 9874367 9874605 -167099535 + L1PB4 LINE L1 5519 5765 -391 * 2183 93 101 58 chrX 9874608 9875025 -167099115 - LTR49 LTR ERV1 -160 435 1 2297 36 79 0 chrX 9875544 9875821 -167098319 - AluY SINE Alu -12 299 1 1551 168 58 21 chrX 9875847 9876138 -167098002 + AluJo SINE Alu 1 302 -10 194 291 175 10 chrX 9876176 9876279 -167097861 + MIR SINE MIR 101 220 -42 306 0 0 0 chrX 9876283 9876317 -167097823 + (TG)n Simple_repeat Simple_repeat 2 35 0 5789 114 9 6 chrX 9876334 9877404 -167096736 + L1PA13 LINE L1 5098 6163 0 222 37 0 0 chrX 9878046 9878073 -167096067 + (TC)n Simple_repeat Simple_repeat 2 28 0 1036 160 12 72 chrX 9878086 9878336 -167095804 - L1MD2 LINE L1 -14 6345 6111 394 309 77 24 chrX 9878876 9879044 -167095096 + MER5B DNA MER1_type 1 177 -1 569 298 77 25 chrX 9879745 9879894 -167094246 - MIR SINE MIR -4 258 91 2248 87 30 0 chrX 9879894 9880192 -167093948 + AluSx SINE Alu 1 307 -5 569 298 77 25 chrX 9880192 9880277 -167093863 - MIR SINE MIR -171 91 12 304 209 68 25 chrX 9880457 9880620 -167093520 + (TATATG)n Simple_repeat Simple_repeat 3 172 0 203 318 15 15 chrX 9880753 9880819 -167093321 - MER5B DNA MER1_type -111 67 2 21 0 0 0 chrX 9881512 9881533 -167092607 + AT_rich Low_complexity Low_complexity 1 21 0 1941 116 0 65 chrX 9882677 9883032 -167091108 - MER4E LTR ERV1 0 779 448 559 122 0 0 chrX 9883032 9883114 -167091026 + AluJ/FRAM SINE Alu 216 297 -15 2125 171 40 33 chrX 9883125 9883575 -167090565 - MER4E LTR ERV1 -326 453 1 2193 171 72 100 chrX 9883867 9884557 -167089583 + MER50 LTR ERV1 10 680 -54 2444 119 119 0 chrX 9884560 9884948 -167089192 + MER57B LTR ERV1 1 434 0 23 0 0 0 chrX 9885510 9885533 -167088607 + AT_rich Low_complexity Low_complexity 1 23 0 2600 149 4 28 chrX 9885533 9886037 -167088103 - L1MA3 LINE L1 0 6305 5814 4933 104 3 19 chrX 9886043 9886569 -167087571 - L1MA2 LINE L1 0 6304 5792 1496 89 181 16 chrX 9886569 9886817 -167087323 - AluSc SINE Alu -10 289 1 4933 104 3 19 chrX 9886817 9887048 -167087092 - L1MA2 LINE L1 -512 5792 5559 934 233 116 33 chrX 9887297 9887679 -167086461 - MLT1D LTR MaLR -7 498 88 8199 71 5 9 chrX 9887971 9889047 -167085093 - MER11C LTR ERVK 0 1071 1 456 309 42 30 chrX 9889064 9889232 -167084908 - MIR SINE MIR -31 231 62 297 321 0 15 chrX 9889393 9889524 -167084616 + Charlie2 DNA MER1_type 171 299 -2563 278 291 58 0 chrX 9889627 9889730 -167084410 + Charlie2 DNA MER1_type 369 477 -2305 2229 90 6 51 chrX 9890385 9890697 -167083443 - AluSg SINE Alu -12 298 1 370 243 29 70 chrX 9891346 9891618 -167082522 - Charlie7 DNA MER1_type -3 2609 2349 * 808 311 65 38 chrX 9891617 9892279 -167081861 - Charlie7 DNA MER1_type -1874 738 59 203 88 29 0 chrX 9892867 9892901 -167081239 + (TTTTC)n Simple_repeat Simple_repeat 3 37 0 411 106 24 24 chrX 9894537 9894622 -167079518 + CT-rich Low_complexity Low_complexity 1 85 0 1787 185 3 6 chrX 9894627 9894940 -167079200 - AluJo SINE Alu 0 312 1 2706 118 8 98 chrX 9894949 9895424 -167078716 + MER4B LTR ERV1 1 571 -208 183 42 0 0 chrX 9895424 9895448 -167078692 + (TTATG)n Simple_repeat Simple_repeat 1 24 0 2706 118 8 98 chrX 9895448 9895640 -167078500 + MER4B LTR ERV1 571 779 0 1723 181 10 7 chrX 9896002 9896306 -167077834 + AluSx SINE Alu 5 309 -3 362 281 130 80 chrX 9898282 9898834 -167075306 - L1M4 LINE L1 -1692 4454 3875 228 333 31 0 chrX 9899036 9899165 -167074975 - L1M4 LINE L1 -2493 3653 3521 4946 75 42 31 chrX 9899357 9900064 -167074076 - SVA Other Other 0 1386 672 697 276 115 57 chrX 9900076 9900641 -167073499 - L1M4 LINE L1 -2809 3337 2740 1908 154 7 7 chrX 9900708 9901007 -167073133 + AluSx SINE Alu 1 299 -13 666 335 44 25 chrX 9901148 9901554 -167072586 + LTR16C LTR ERVL 74 487 -4 727 154 19 23 chrX 9903023 9903413 -167070727 + CT-rich Low_complexity Low_complexity 1 388 0 181 136 23 23 chrX 9903434 9903478 -167070662 + CT-rich Low_complexity Low_complexity 2 45 0 249 250 17 0 chrX 9903480 9903540 -167070600 + C-rich Low_complexity Low_complexity 3 63 0 1194 146 30 43 chrX 9903612 9903845 -167070295 + MER30 DNA MER1_type 1 230 0 2239 83 20 10 chrX 9904591 9904915 -167069225 + AluSp SINE Alu 1 313 0 633 260 119 102 chrX 9906927 9907446 -167066694 + MLT1F1 LTR MaLR 10 562 -5 3471 139 13 95 chrX 9907446 9907715 -167066425 - MER44D DNA MER2_type -1882 705 415 2447 83 32 29 chrX 9907715 9908089 -167066051 + THE1C LTR MaLR 1 375 0 3471 139 13 95 chrX 9908089 9908587 -167065553 - MER44D DNA MER2_type -2172 415 1 267 286 17 76 chrX 9908896 9908978 -167065162 + MIR SINE MIR 80 154 -108 2364 63 0 3 chrX 9908978 9909277 -167064863 + AluY SINE Alu 1 298 -13 267 286 17 76 chrX 9909277 9909313 -167064827 + MIR SINE MIR 154 191 -71 249 33 0 0 chrX 9910009 9910039 -167064101 + (TC)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chrX 9910039 9910069 -167064071 + (CA)n Simple_repeat Simple_repeat 1 30 0 214 301 0 55 chrX 9911082 9911155 -167062985 + L3 LINE CR1 888 956 -621 1802 181 13 19 chrX 9911320 9911634 -167062506 - AluJb SINE Alu 0 312 1 229 299 65 19 chrX 9911647 9911754 -167062386 - MER117 DNA MER1_type -53 144 33 403 306 95 31 chrX 9911764 9911986 -167062154 + L3 LINE CR1 1112 1347 -230 1444 239 81 84 chrX 9912650 9913528 -167060612 + L1MC4 LINE L1 7048 7922 -120 761 191 8 0 chrX 9913602 9913868 -167060272 + (CAGA)n Simple_repeat Simple_repeat 1 268 0 863 160 6 0 chrX 9913885 9914060 -167060080 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 846 104 19 13 chrX 9914103 9914257 -167059883 + (TAGA)n Simple_repeat Simple_repeat 2 156 0 1933 107 44 4 chrX 9914264 9914534 -167059606 + AluSq SINE Alu 1 281 -32 216 0 0 0 chrX 9914536 9914560 -167059580 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 310 233 25 42 chrX 9914575 9914695 -167059445 + L1MC4 LINE L1 7925 8042 0 2252 107 0 7 chrX 9915595 9916019 -167058121 - AluY SINE Alu 0 422 1 1140 86 0 0 chrX 9918316 9918746 -167055394 + (TA)n Simple_repeat Simple_repeat 1 430 0 1916 132 10 24 chrX 9918766 9919062 -167055078 + AluJb SINE Alu 1 292 -20 1671 179 3 25 chrX 9919803 9920121 -167054019 + AluJo SINE Alu 1 311 -1 402 227 241 0 chrX 9921066 9921207 -167052933 + MER5A DNA MER1_type 9 183 -6 21 36 0 0 chrX 9923094 9923122 -167051018 + AT_rich Low_complexity Low_complexity 1 28 0 2255 57 0 30 chrX 9923489 9923787 -167050353 + AluY SINE Alu 1 289 -22 832 292 80 31 chrX 9924314 9924824 -167049316 + L1MEc LINE L1 1526 2060 -4336 2357 86 3 0 chrX 9924828 9925120 -167049020 - AluSp SINE Alu -20 293 1 552 100 0 0 chrX 9925272 9925352 -167048788 + MADE1 DNA Mariner 1 80 0 606 165 8 8 chrX 9925359 9925480 -167048660 + MLT2B2 LTR ERVL 1 121 -394 2066 92 82 0 chrX 9925873 9926154 -167047986 + AluSg SINE Alu 1 304 -6 1744 94 148 0 chrX 9926493 9926749 -167047391 - AluSx SINE Alu -18 294 1 223 333 62 31 chrX 9929165 9929294 -167044846 + MIR SINE MIR 130 262 0 288 0 0 0 chrX 9929512 9929544 -167044596 + (T)n Simple_repeat Simple_repeat 1 32 0 1945 158 21 21 chrX 9929986 9930367 -167043773 - L1PA16 LINE L1 -2 6164 5784 435 180 0 30 chrX 9930367 9930467 -167043673 - L1PA16 LINE L1 -337 5829 5733 343 136 0 0 chrX 9930777 9930843 -167043297 + L1P4 LINE L1 5594 5659 -507 391 154 49 0 chrX 9933219 9933612 -167040528 + (TA)n Simple_repeat Simple_repeat 1 412 0 296 237 33 3 chrX 9933625 9933954 -167040186 + (TA)n Simple_repeat Simple_repeat 1 339 0 22 0 0 0 chrX 9934000 9934022 -167040118 + AT_rich Low_complexity Low_complexity 1 22 0 220 208 19 0 chrX 9934239 9934345 -167039795 + (TA)n Simple_repeat Simple_repeat 2 109 0 288 215 0 25 chrX 9934923 9935044 -167039096 + CT-rich Low_complexity Low_complexity 1 118 0 418 172 6 32 chrX 9935591 9935748 -167038392 + CT-rich Low_complexity Low_complexity 1 153 0 22 35 0 0 chrX 9937670 9937699 -167036441 + AT_rich Low_complexity Low_complexity 1 29 0 284 167 11 89 chrX 9937704 9937794 -167036346 - MLT2C1 LTR ERVL -55 342 260 1803 177 20 41 chrX 9937794 9938347 -167035793 + L1MB1 LINE L1 5158 5689 -623 359 186 35 0 chrX 9939550 9939636 -167034504 - L1MB4 LINE L1 -1 6179 6091 * 4195 185 38 12 chrX 9939629 9940620 -167033520 - L1MA1 LINE L1 -235 6067 5001 2126 146 0 19 chrX 9940620 9940935 -167033205 - AluSx SINE Alu -3 309 1 4195 185 38 12 chrX 9940935 9941461 -167032679 - L1MA1 LINE L1 -1301 5001 4490 1501 157 18 28 chrX 9941553 9941839 -167032301 + Tigger1 DNA MER2_type 1 283 -2135 333 93 37 0 chrX 9941848 9941902 -167032238 + L1 LINE L1 4712 4767 -1379 647 191 7 40 chrX 9941920 9942072 -167032068 + L1M1 LINE L1 22 168 -7397 2693 73 8 6 chrX 9942076 9942430 -167031710 + THE1A LTR MaLR 1 355 0 11253 105 15 0 chrX 9942430 9943986 -167030154 + THE1A-int LTR MaLR 1 1580 0 2665 83 11 0 chrX 9943986 9944337 -167029803 + THE1A LTR MaLR 1 355 0 249 248 67 48 chrX 9944908 9945013 -167029127 - MER5B DNA MER1_type -7 171 65 233 326 152 0 chrX 9945020 9945112 -167029028 + MER5B DNA MER1_type 12 117 -61 334 293 45 30 chrX 9945125 9945327 -167028813 + L1MB1 LINE L1 5701 5905 -257 265 206 50 14 chrX 9945374 9945515 -167028625 + (TA)n Simple_repeat Simple_repeat 1 146 0 2270 98 0 0 chrX 9945616 9945911 -167028229 + AluSg SINE Alu 1 295 -15 205 338 78 35 chrX 9946817 9946959 -167027181 - MIR3 SINE MIR -59 149 2 232 297 127 17 chrX 9947200 9947318 -167026822 + MIR SINE MIR 54 184 -78 1820 241 4 12 chrX 9947548 9948045 -167026095 - L1MD3 LINE L1 -2 7993 7501 837 235 23 18 chrX 9948774 9948991 -167025149 + MER20 DNA MER1_type 1 218 -1 945 144 163 6 chrX 9949071 9949231 -167024909 - AluSx SINE Alu -22 290 106 3757 144 159 95 chrX 9949231 9950519 -167023621 + pTR5 LTR ERV1 744 2435 -3 759 155 0 0 chrX 9950519 9950635 -167023505 - AluSx SINE Alu -196 116 1 991 151 12 8 chrX 9951303 9951562 -167022578 + (TA)n Simple_repeat Simple_repeat 1 260 0 1231 234 82 62 chrX 9951373 9951850 -167022290 - L1MC3 LINE L1 -19 7766 7452 237 33 0 0 chrX 9951850 9951880 -167022260 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1231 234 82 62 chrX 9951880 9952133 -167022007 - L1MC3 LINE L1 -333 7452 7206 282 172 31 16 chrX 9952142 9952206 -167021934 - MLT1F LTR MaLR -436 131 67 944 124 0 43 chrX 9952261 9952447 -167021693 - L1MA7 LINE L1 -3 6288 6111 2463 76 0 0 chrX 9953232 9953533 -167020607 - AluSx SINE Alu -11 301 1 501 32 0 0 chrX 9955107 9955170 -167018970 + (TC)n Simple_repeat Simple_repeat 2 64 0 225 0 0 0 chrX 9955169 9955194 -167018946 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 904 89 37 0 chrX 9955529 9955664 -167018476 + L1PA10 LINE L1 6028 6167 -1 184 339 48 48 chrX 9958193 9958317 -167015823 + MIR SINE MIR 21 144 -64 202 298 197 10 chrX 9959189 9959387 -167014753 - L2 LINE L2 -589 2725 2491 205 208 28 0 chrX 9961041 9961113 -167013027 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 357 282 66 54 chrX 9961292 9961551 -167012589 + L1MA9 LINE L1 6013 6274 -38 225 134 0 90 chrX 9961602 9961632 -167012508 + (TAAAAA)n Simple_repeat Simple_repeat 4 26 -38 1220 60 0 0 chrX 9961632 9961783 -167012357 + L1PA3 LINE L1 6002 6152 -3 225 134 0 90 chrX 9961783 9961819 -167012321 + (TAAAAA)n Simple_repeat Simple_repeat 26 64 0 279 0 0 0 chrX 9962237 9962268 -167011872 + (A)n Simple_repeat Simple_repeat 1 31 0 763 229 39 0 chrX 9962273 9962426 -167011714 + FRAM SINE Alu 1 159 -7 2333 109 0 0 chrX 9963826 9964137 -167010003 - AluSx SINE Alu -1 311 1 1711 154 11 0 chrX 9964268 9964540 -167009600 - AluJo SINE Alu -3 309 35 26 0 0 0 chrX 9964599 9964625 -167009515 + AT_rich Low_complexity Low_complexity 1 26 0 286 256 13 0 chrX 9964823 9964901 -167009239 - MLT1F LTR MaLR -463 79 1 200 219 12 37 chrX 9965462 9965544 -167008596 + A-rich Low_complexity Low_complexity 5 84 0 581 259 151 22 chrX 9965998 9966230 -167007910 - MIR SINE MIR 0 262 1 5481 90 15 0 chrX 9966541 9967332 -167006808 - L1PA10 LINE L1 -4 6164 5362 754 132 0 0 chrX 9967328 9967457 -167006683 + L1PA10 LINE L1 5222 5350 -796 * 207 100 0 0 chrX 9967532 9967562 -167006578 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 28 0 0 0 chrX 9968717 9968745 -167005395 + AT_rich Low_complexity Low_complexity 1 28 0 288 343 0 0 chrX 9969702 9969801 -167004339 - MIR SINE MIR -10 252 154 1391 192 14 52 chrX 9970001 9970288 -167003852 - AluJb SINE Alu -36 276 1 251 299 0 73 chrX 9970299 9970436 -167003704 - MIR SINE MIR -64 144 18 857 136 0 0 chrX 9970727 9970859 -167003281 - FLAM_C SINE Alu 0 133 2 680 219 11 48 chrX 9971248 9971435 -167002705 - MER20 DNA MER1_type 0 219 40 2177 136 72 13 chrX 9971443 9971834 -167002306 - MSTB LTR MaLR -12 414 1 244 211 19 0 chrX 9971834 9971880 -167002260 - MER20 DNA MER1_type -172 47 1 308 323 111 72 chrX 9971917 9972654 -167001486 + L2 LINE L2 2211 2976 -338 22 0 0 0 chrX 9972927 9972949 -167001191 + AT_rich Low_complexity Low_complexity 1 22 0 217 310 147 0 chrX 9973212 9973328 -167000812 - MIR SINE MIR -21 241 109 671 284 31 7 chrX 9973344 9973752 -167000388 - MLT1E3 LTR MaLR -147 477 30 247 221 116 0 chrX 9974529 9974615 -166999525 - MER20 DNA MER1_type -100 119 24 2136 87 13 52 chrX 9975547 9975857 -166998283 + AluSx SINE Alu 1 298 -14 343 289 114 30 chrX 9976712 9976913 -166997227 + L1MC4a LINE L1 5703 5920 -1888 2171 213 30 70 chrX 9977145 9977840 -166996300 + LTR8 LTR ERV1 25 691 0 398 250 25 0 chrX 9979481 9979561 -166994579 + MER5A DNA MER1_type 2 83 -106 371 351 0 7 chrX 9980004 9980152 -166993988 - MIR SINE MIR -48 214 68 2132 138 0 0 chrX 9980544 9980855 -166993285 - AluSx SINE Alu -1 311 1 700 314 90 0 chrX 9981290 9981624 -166992516 + L2 LINE L2 2575 2938 -376 290 238 0 0 chrX 9981738 9981801 -166992339 + L2 LINE L2 3210 3272 0 216 413 0 0 chrX 9982479 9982571 -166991569 + MIR3 SINE MIR 69 160 -48 1478 159 4 4 chrX 9983146 9983403 -166990737 - Tigger3(Golem) DNA MER2_type -1 3028 2772 590 197 21 9 chrX 9983400 9983528 -166990612 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 779 193 40 0 chrX 9983618 9983768 -166990372 - FRAM SINE Alu -16 160 5 225 0 0 0 chrX 9983983 9984008 -166990132 + (CA)n Simple_repeat Simple_repeat 2 26 0 581 272 6 12 chrX 9984097 9984266 -166989874 + MER20 DNA MER1_type 50 217 -2 3122 167 19 15 chrX 9984407 9984999 -166989141 - LTR26 LTR ERV1 0 603 10 2160 135 0 0 chrX 9985574 9985878 -166988262 - AluSx SINE Alu -8 304 1 3727 94 10 52 chrX 9985967 9986585 -166987555 - LTR14B LTR ERVK 0 608 17 2449 106 30 8 chrX 9987341 9987708 -166986432 + THE1C LTR MaLR 1 375 0 822 195 41 59 chrX 9987832 9988053 -166986087 + MER58A DNA MER1_type 7 223 -1 507 60 0 0 chrX 9988724 9988791 -166985349 + (TG)n Simple_repeat Simple_repeat 1 67 0 673 211 34 11 chrX 9988940 9989115 -166985025 - MER3 DNA MER1_type -12 197 19 309 85 0 0 chrX 9990148 9990195 -166983945 + L1MA5A LINE L1 6241 6287 -10 31 0 0 0 chrX 9990604 9990635 -166983505 + AT_rich Low_complexity Low_complexity 1 31 0 1246 132 0 0 chrX 9990635 9990809 -166983331 - AluSq SINE Alu -24 289 116 198 281 24 12 chrX 9991021 9991103 -166983037 - MIR SINE MIR -70 192 110 373 186 0 20 chrX 9992260 9992362 -166981778 + (TG)n Simple_repeat Simple_repeat 1 100 0 22 0 0 0 chrX 9992609 9992631 -166981509 + AT_rich Low_complexity Low_complexity 1 22 0 1033 178 4 62 chrX 9992999 9993240 -166980900 + L1MD2 LINE L1 6111 6337 -22 2778 7 3 3 chrX 9993443 9993753 -166980387 - AluYa5 SINE Alu -1 310 1 316 256 12 69 chrX 9994252 9994412 -166979728 - L1ME2 LINE L1 -277 5887 5737 492 156 11 0 chrX 9994413 9994503 -166979637 + L1ME LINE L1 5628 5718 -444 192 191 0 0 chrX 9994509 9994545 -166979595 + (TATATG)n Simple_repeat Simple_repeat 4 40 0 1842 156 54 15 chrX 9994545 9994879 -166979261 + MER7A DNA MER2_type 2 346 0 2097 123 7 0 chrX 9995883 9996184 -166977956 - AluSx SINE Alu -9 303 1 206 253 0 24 chrX 9996302 9996385 -166977755 + (TA)n Simple_repeat Simple_repeat 2 82 0 396 88 0 0 chrX 9996434 9996461 -166977679 + (TCCA)n Simple_repeat Simple_repeat 1 84 0 396 88 0 0 chrX 9996461 9996518 -166977622 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 2005 125 67 25 chrX 9996519 9996567 -166977573 - THE1C LTR MaLR 0 375 330 450 0 0 0 chrX 9996567 9996617 -166977523 + (TA)n Simple_repeat Simple_repeat 2 51 0 2005 125 67 25 chrX 9996617 9996928 -166977212 - THE1C LTR MaLR -45 330 1 570 175 17 34 chrX 9997010 9997367 -166976773 + (TCTA)n Simple_repeat Simple_repeat 1 350 0 234 0 0 0 chrX 9997397 9997423 -166976717 + (GA)n Simple_repeat Simple_repeat 1 26 0 441 280 78 71 chrX 9997441 9997723 -166976417 - MLT2C2 LTR ERVL -113 284 1 215 310 39 62 chrX 9998027 9998156 -166975984 - MER5A DNA MER1_type -56 133 8 2320 57 7 10 chrX 9998351 9998649 -166975491 + AluY SINE Alu 1 297 -14 1531 157 99 4 chrX 9998660 9998922 -166975218 + AluJb SINE Alu 2 288 -24 2154 109 0 13 chrX 9999758 10000060 -166974080 + AluSx SINE Alu 12 309 -3 198 118 0 0 chrX 10000132 10000166 -166973974 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 279 330 33 60 chrX 10001095 10001165 -166972975 + MIR3 SINE MIR 31 101 -107 511 42 111 0 chrX 10001165 10001237 -166972903 + MADE1 DNA Mariner 1 80 0 279 330 33 60 chrX 10001237 10001348 -166972792 + MIR3 SINE MIR 101 207 -1 243 295 13 0 chrX 10002146 10002224 -166971916 + L1ME LINE L1 5576 5654 -467 384 331 186 33 chrX 10003809 10004380 -166969760 - L1MC4a LINE L1 -1884 5924 5267 33 0 0 0 chrX 10004394 10004427 -166969713 + AT_rich Low_complexity Low_complexity 1 33 0 1850 143 159 24 chrX 10004824 10005201 -166968939 + MSTA LTR MaLR 1 428 0 4197 137 27 10 chrX 10006338 10007037 -166967103 + MER50 LTR ERV1 1 711 -23 1823 141 3 55 chrX 10007977 10008304 -166965836 - AluJb SINE Alu -2 310 1 227 211 79 13 chrX 10008616 10008692 -166965448 - L1M LINE L1 -2406 5402 5322 247 169 46 0 chrX 10010014 10010079 -166964061 + (CATA)n Simple_repeat Simple_repeat 3 70 0 2010 199 22 10 chrX 10010079 10010482 -166963658 + MER82 DNA MER2_type 1 408 -245 375 274 137 17 chrX 10010499 10010616 -166963524 + MER82 DNA MER2_type 523 653 0 183 42 0 0 chrX 10012486 10012510 -166961630 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 830 137 0 0 chrX 10012510 10012627 -166961513 - AluJb SINE Alu -195 117 1 346 363 61 9 chrX 10013372 10013584 -166960556 - L1ME LINE L1 -340 5781 5559 1767 167 36 6 chrX 10015211 10015547 -166958593 + L1MB7 LINE L1 5458 5803 -381 2234 52 38 3 chrX 10015667 10015954 -166958186 + AluY SINE Alu 2 298 -13 279 296 38 23 chrX 10016328 10016460 -166957680 - LTR41 LTR ERVL -613 160 27 1535 223 11 3 chrX 10016515 10016870 -166957270 + L1MB7 LINE L1 5814 6171 -13 4764 127 28 1 chrX 10016915 10017662 -166956478 - L1PB4 LINE L1 -2 6154 5388 243 103 0 0 chrX 10017875 10017914 -166956226 + (T)n Simple_repeat Simple_repeat 1 39 0 245 300 40 47 chrX 10021776 10021926 -166952214 + L2 LINE L2 2996 3144 -169 1609 205 7 7 chrX 10022252 10022545 -166951595 + AluJo SINE Alu 1 293 -19 1550 226 28 22 chrX 10022775 10023137 -166951003 + MLT1A1 LTR MaLR 1 427 -1 254 270 10 50 chrX 10023261 10023361 -166950779 - MIR3 SINE MIR -110 98 3 180 302 32 16 chrX 10023379 10023442 -166950698 + MIR SINE MIR 11 74 -188 496 162 60 43 chrX 10024424 10024541 -166949599 + MER66A LTR ERV1 360 478 0 1730 270 81 17 chrX 10024543 10025597 -166948543 - L1ME LINE L1 -611 5553 4437 252 313 0 38 chrX 10026389 10026469 -166947671 + L2 LINE L2 3227 3303 -10 1549 169 47 32 chrX 10028994 10029273 -166944867 + AluJo SINE Alu 4 286 -26 656 41 77 18 chrX 10029273 10029443 -166944697 + (TA)n Simple_repeat Simple_repeat 1 180 0 1167 128 0 0 chrX 10029571 10029750 -166944390 + L1PA16 LINE L1 5798 5976 -190 2124 221 56 4 chrX 10030655 10031120 -166943020 - MLT1D LTR MaLR -1 504 16 2298 126 36 14 chrX 10031159 10031515 -166942625 + THE1B LTR MaLR 1 364 0 1085 239 92 35 chrX 10031598 10031946 -166942194 - MLT1A2 LTR MaLR -6 368 1 1728 168 3 3 chrX 10032442 10032727 -166941413 + AluJo SINE Alu 1 285 -27 501 17 0 0 chrX 10033752 10033810 -166940330 + (TG)n Simple_repeat Simple_repeat 1 58 0 707 208 100 86 chrX 10034005 10034166 -166939974 + MER39 LTR ERV1 417 450 -115 5085 36 0 2 chrX 10034166 10034776 -166939364 + L1PA4 LINE L1 5544 6152 -3 707 208 100 86 chrX 10034776 10034893 -166939247 + MER39 LTR ERV1 450 564 -1 25 65 0 0 chrX 10034967 10035013 -166939127 + AT_rich Low_complexity Low_complexity 1 46 0 284 275 50 42 chrX 10035135 10035255 -166938885 - L1ME1 LINE L1 -81 6085 5965 2031 240 28 11 chrX 10035261 10035824 -166938316 + L1ME1 LINE L1 5391 5963 -201 955 210 36 0 chrX 10036139 10036334 -166937806 + MER58A DNA MER1_type 12 213 -11 600 137 58 17 chrX 10037826 10038058 -166936082 + (TCTA)n Simple_repeat Simple_repeat 1 291 -47 230 95 24 0 chrX 10038058 10038100 -166936040 + (TATG)n Simple_repeat Simple_repeat 2 44 0 600 137 58 17 chrX 10038100 10038116 -166936024 + (TCTA)n Simple_repeat Simple_repeat 291 338 0 195 114 0 0 chrX 10038116 10038151 -166935989 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 2779 124 7 29 chrX 10039795 10040239 -166933901 + Tigger2a DNA MER2_type 1 434 0 2049 117 45 3 chrX 10040356 10040647 -166933493 - AluSx SINE Alu -9 303 1 197 293 85 94 chrX 10041150 10041256 -166932884 - L2 LINE L2 0 3272 3168 489 82 88 0 chrX 10041450 10041711 -166932429 + (TA)n Simple_repeat Simple_repeat 1 284 0 204 164 60 15 chrX 10041722 10041789 -166932351 + (TA)n Simple_repeat Simple_repeat 2 71 0 605 14 14 0 chrX 10242167 10242241 -166731899 + (TC)n Simple_repeat Simple_repeat 1 75 0 2197 104 0 0 chrX 10242267 10242547 -166731593 + AluY SINE Alu 5 284 -27 474 33 0 0 chrX 10242547 10242607 -166731533 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1977 157 3 3 chrX 10243745 10244044 -166730096 - AluJb SINE Alu -13 299 1 962 239 71 34 chrX 10244046 10244372 -166729768 - L1MC4 LINE L1 -139 7903 7566 925 100 0 0 chrX 10244386 10244516 -166729624 - L1MA2 LINE L1 -406 5898 5769 21 0 0 0 chrX 10244518 10244539 -166729601 + AT_rich Low_complexity Low_complexity 1 21 0 4200 94 13 8 chrX 10244539 10245147 -166728993 - L1MA2 LINE L1 0 6304 5694 1230 131 4 5 chrX 10245149 10245360 -166728780 + L1MA4A LINE L1 5931 6194 -109 1435 137 0 76 chrX 10245460 10245709 -166728431 - AluJb SINE Alu -82 230 1 325 156 56 33 chrX 10246289 10246379 -166727761 + L1P LINE L1 5302 5393 -761 5751 102 9 6 chrX 10246386 10247186 -166726954 - L1PA14 LINE L1 -37 6124 5323 2727 135 37 22 chrX 10247846 10247993 -166726147 + L1MB4 LINE L1 5678 5821 -359 1058 183 0 0 chrX 10247993 10248168 -166725972 + FAM SINE Alu 1 175 0 2727 135 37 22 chrX 10248168 10248510 -166725630 + L1MB4 LINE L1 5821 6174 -6 1384 198 57 43 chrX 10248523 10248732 -166725408 + L1MD3 LINE L1 7594 7812 -183 220 50 0 50 chrX 10248732 10248772 -166725368 + (TATAG)n Simple_repeat Simple_repeat 3 40 0 1384 198 57 43 chrX 10248772 10248930 -166725210 + L1MD3 LINE L1 7812 7966 -29 914 109 0 0 chrX 10249534 10249704 -166724436 + FLAM_C SINE Alu 1 170 0 210 238 16 48 chrX 10249774 10249837 -166724303 + MIR SINE MIR 111 171 -91 1417 112 5 0 chrX 10250946 10251134 -166723006 - AluSx SINE Alu -123 189 1 2146 209 60 102 chrX 10251134 10251935 -166722205 - L1MC4 LINE L1 -492 7550 6784 266 186 0 34 chrX 10251935 10251994 -166722146 + MER5B DNA MER1_type 115 171 -7 1362 103 0 6 chrX 10252755 10252929 -166721211 - AluSq SINE Alu -140 173 1 255 286 57 9 chrX 10253592 10253697 -166720443 + MIR SINE MIR 41 150 -58 246 108 0 0 chrX 10253887 10253924 -166720216 + MIR SINE MIR 219 255 -7 1367 71 0 12 chrX 10254407 10254577 -166719563 + AluSg1 SINE Alu 1 168 -141 494 16 0 16 chrX 10254681 10254745 -166719395 + (TG)n Simple_repeat Simple_repeat 2 64 0 295 351 27 9 chrX 10255603 10255714 -166718426 - L2 LINE L2 0 3313 3201 318 337 37 18 chrX 10255841 10256004 -166718136 - L1ME LINE L1 -386 5735 5570 239 222 0 0 chrX 10256095 10256149 -166717991 - L1ME LINE L1 -683 5438 5385 244 261 15 15 chrX 10256551 10256616 -166717524 + LTR37B LTR ERV1 12 76 -392 297 200 27 81 chrX 10256662 10256836 -166717304 + LTR37B LTR ERV1 76 242 -226 392 160 27 0 chrX 10256941 10257016 -166717124 + MIR SINE MIR 176 252 -10 441 156 0 39 chrX 10257088 10257165 -166716975 + Tigger7 DNA MER2_type 246 319 -414 4190 161 4 24 chrX 10257165 10257884 -166716256 - MER44D DNA MER2_type 0 705 1 264 224 149 0 chrX 10258435 10258502 -166715638 + MIR SINE MIR 68 144 -64 2609 165 136 4 chrX 10259652 10260174 -166713966 - L1MB7 LINE L1 -67 6117 5527 2333 223 7 62 chrX 10260172 10260818 -166713322 - L1M4 LINE L1 -2784 3362 2757 * 2227 89 0 3 chrX 10260818 10261100 -166713040 - AluY SINE Alu -30 281 1 2333 223 7 62 chrX 10261100 10261163 -166712977 - L1M4 LINE L1 -3389 2757 2692 238 321 9 36 chrX 10261340 10261452 -166712688 - MIR SINE MIR -66 196 88 656 100 0 0 chrX 10261983 10262073 -166712067 - AluSg/x SINE Alu -12 298 209 807 217 85 19 chrX 10262180 10262392 -166711748 - L1MB8 LINE L1 -9 6169 5944 348 319 12 60 chrX 10262582 10262748 -166711392 + MIR3 SINE MIR 30 187 -21 1236 186 84 7 chrX 10263883 10264192 -166709948 - MER33 DNA MER1_type -5 319 1 181 212 0 0 chrX 10264529 10264562 -166709578 - L2 LINE L2 -14 3299 3267 1587 144 4 32 chrX 10264763 10265013 -166709127 - AluJo SINE Alu -67 245 3 2117 134 0 0 chrX 10265134 10265457 -166708683 - AluSx SINE Alu 0 323 1 2130 135 10 0 chrX 10265609 10265913 -166708227 - AluSx SINE Alu -5 307 1 455 262 8 91 chrX 10266254 10266517 -166707623 + HAL1 LINE L1 1912 2152 -355 830 188 0 0 chrX 10266517 10266661 -166707479 - MLT1C LTR MaLR 0 467 324 239 186 128 47 chrX 10266676 10266762 -166707378 + HAL1 LINE L1 2381 2473 -34 868 209 57 29 chrX 10267860 10268070 -166706070 + MER58A DNA MER1_type 1 216 -8 2278 97 0 26 chrX 10268070 10268379 -166705761 + AluSx SINE Alu 1 301 -11 2168 76 47 0 chrX 10268635 10268911 -166705229 - AluY SINE Alu -22 289 1 258 194 0 0 chrX 10268912 10268984 -166705156 - L1M4 LINE L1 -959 5187 5116 557 120 136 24 chrX 10268989 10269124 -166705016 - MLT1D LTR MaLR -314 191 1 354 248 57 0 chrX 10269125 10269230 -166704910 + MIR SINE MIR 126 236 -26 192 77 0 0 chrX 10271355 10271381 -166702759 + (TATG)n Simple_repeat Simple_repeat 4 29 0 360 0 0 0 chrX 10272219 10272259 -166701881 + (TG)n Simple_repeat Simple_repeat 2 41 0 241 250 0 0 chrX 10272437 10272493 -166701647 - L1ME LINE L1 -395 5726 5671 1275 161 0 0 chrX 10272821 10273013 -166701127 - AluJo SINE Alu -20 292 101 215 245 164 69 chrX 10273573 10273732 -166700408 + MIR SINE MIR 72 245 -17 1489 137 0 0 chrX 10274443 10274655 -166699485 + AluJb SINE Alu 86 297 -15 662 292 147 59 chrX 10274730 10275080 -166699060 - Charlie7 DNA MER1_type -1752 860 459 2352 97 10 0 chrX 10275080 10275388 -166698752 - AluSq SINE Alu -2 311 1 662 292 147 59 chrX 10275388 10275493 -166698647 - Charlie7 DNA MER1_type -2153 459 365 360 314 38 22 chrX 10275676 10275861 -166698279 - Charlie7 DNA MER1_type -2375 237 50 369 0 0 0 chrX 10275894 10275935 -166698205 + (TTG)n Simple_repeat Simple_repeat 2 42 0 774 160 0 7 chrX 10275943 10276087 -166698053 - L1M4 LINE L1 -1031 5115 4973 200 0 0 91 chrX 10276192 10276225 -166697915 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2069 90 101 0 chrX 10276254 10276532 -166697608 + AluSx SINE Alu 1 306 -6 2913 83 5 5 chrX 10276889 10277264 -166696876 - THE1C LTR MaLR 0 375 1 2272 96 7 20 chrX 10278110 10278412 -166695728 + AluSx SINE Alu 1 298 -14 374 253 0 0 chrX 10278543 10278618 -166695522 + AluSp SINE Alu 123 197 -106 1890 121 43 63 chrX 10279964 10280312 -166693828 + MLT1B LTR MaLR 46 386 -4 2237 118 0 16 chrX 10280537 10280852 -166693288 - AluSg SINE Alu 0 310 1 23 0 0 0 chrX 10280854 10280877 -166693263 + AT_rich Low_complexity Low_complexity 1 23 0 2340 116 67 84 chrX 10281109 10281407 -166692733 - MLT1C LTR MaLR 0 467 178 960 184 0 0 chrX 10281407 10281570 -166692570 - FRAM SINE Alu 0 166 4 2340 116 67 84 chrX 10281570 10281746 -166692394 - MLT1C LTR MaLR -289 178 1 228 218 18 0 chrX 10281846 10281901 -166692239 + L2 LINE L2 3006 3061 -252 730 216 77 26 chrX 10282732 10282926 -166691214 + L1MC4a LINE L1 5711 5914 -1894 318 206 20 103 chrX 10283293 10283439 -166690701 - L1MC5 LINE L1 -69 7892 7759 2651 157 7 2 chrX 10283599 10284038 -166690102 - L1MB2 LINE L1 -7 6164 5724 1665 140 0 38 chrX 10284163 10284428 -166689712 - AluJb SINE Alu -25 287 33 268 303 0 0 chrX 10284695 10284771 -166689369 + MIR3 SINE MIR 132 207 -1 2146 93 18 14 chrX 10284787 10285067 -166689073 + AluSx SINE Alu 1 281 -31 195 42 0 0 chrX 10285070 10285094 -166689046 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2215 94 0 7 chrX 10285424 10285712 -166688428 - AluSx SINE Alu -26 286 1 690 150 225 67 chrX 10285946 10286213 -166687927 - MER4C LTR ERV1 0 465 157 1793 144 37 43 chrX 10286233 10286581 -166687559 - MER4A LTR ERV1 -318 346 1 180 0 0 0 chrX 10286590 10286610 -166687530 + (A)n Simple_repeat Simple_repeat 1 20 0 1096 281 82 27 chrX 10286840 10287317 -166686823 - L1MC4a LINE L1 -1883 5925 5423 228 156 22 0 chrX 10287491 10287536 -166686604 + (TATAG)n Simple_repeat Simple_repeat 3 48 0 237 236 106 24 chrX 10287636 10287655 -166686485 - L1MC4a LINE L1 -2383 5425 5409 2711 138 54 33 chrX 10287655 10288135 -166686005 - LTR2B LTR ERV1 0 490 1 237 236 106 24 chrX 10288135 10288238 -166685902 - L1MC4a LINE L1 -2399 5409 5293 2237 102 3 3 chrX 10288361 10288664 -166685476 - AluSg SINE Alu -4 306 4 1207 116 0 6 chrX 10289045 10289209 -166684931 + AluSq SINE Alu 59 221 -92 1197 244 82 0 chrX 10291029 10291351 -166682789 - L1ME3 LINE L1 -1 6161 5798 264 275 38 24 chrX 10291399 10291562 -166682578 - MIR SINE MIR -62 146 33 211 258 6 101 chrX 10292769 10292979 -166681161 + MIR SINE MIR 22 212 -50 353 74 37 0 chrX 10293427 10293481 -166680659 - Alu SINE Alu -2 299 244 2282 85 7 36 chrX 10293429 10293736 -166680404 - AluSx SINE Alu -14 298 1 237 267 9 97 chrX 10294799 10295034 -166679106 + GA-rich Low_complexity Low_complexity 1 214 0 346 264 5 91 chrX 10295142 10295380 -166678760 + GA-rich Low_complexity Low_complexity 1 217 0 286 250 76 21 chrX 10295687 10295831 -166678309 + LTR33 LTR ERVL 38 189 -332 336 232 171 18 chrX 10295941 10296105 -166678035 + LTR33 LTR ERVL 327 515 -6 203 306 20 10 chrX 10296105 10296203 -166677937 + MIR SINE MIR 161 259 -3 2356 94 3 0 chrX 10296676 10296975 -166677165 - AluSp SINE Alu -13 300 1 2030 148 13 0 chrX 10297045 10297350 -166676790 - AluJb SINE Alu -3 309 1 1847 150 24 41 chrX 10297716 10298010 -166676130 - AluJo SINE Alu -23 289 1 471 220 47 93 chrX 10298072 10298222 -166675918 - L1ME3 LINE L1 -8 6154 6012 3613 78 74 34 chrX 10298242 10298735 -166675405 + MER41B LTR ERV1 1 518 -117 2069 92 88 0 chrX 10298735 10299018 -166675122 - AluSc SINE Alu -1 308 1 3613 78 74 34 chrX 10299018 10299049 -166675091 + MER41B LTR ERV1 518 546 -89 1155 219 144 14 chrX 10299069 10299429 -166674711 - L1ME2 LINE L1 -134 6030 5624 2015 131 7 13 chrX 10299677 10299983 -166674157 - AluJo SINE Alu -6 306 3 706 148 9 0 chrX 10299985 10300093 -166674047 - AluJo/FLAM SINE Alu -202 110 2 351 242 10 10 chrX 10300105 10300204 -166673936 - LTR37B LTR ERV1 -42 426 328 594 0 0 0 chrX 10300751 10300817 -166673323 + (TTATG)n Simple_repeat Simple_repeat 2 67 0 1441 189 14 21 chrX 10300820 10301100 -166673040 - AluJb SINE Alu -30 282 5 205 238 0 0 chrX 10301540 10301582 -166672558 - MIR SINE MIR -1 261 220 2046 158 0 0 chrX 10301607 10301911 -166672229 - AluSx SINE Alu -8 304 1 229 367 0 9 chrX 10301959 10302068 -166672072 - MIR SINE MIR -133 129 22 2121 113 14 0 chrX 10303383 10303676 -166670464 + AluSx SINE Alu 1 297 -15 1704 191 121 14 chrX 10303819 10304277 -166669863 + MLT1E2 LTR MaLR 100 575 -51 305 221 80 71 chrX 10304316 10304429 -166669711 + L1MD2 LINE L1 585 698 -5842 3887 189 63 10 chrX 10304611 10305674 -166668466 + L1MD2 LINE L1 906 2011 -4529 814 85 9 0 chrX 10305674 10305780 -166668360 + AluY SINE Alu 1 107 -204 532 227 204 22 chrX 10305899 10306124 -166668016 + HAL1 LINE L1 1651 1916 -591 237 202 12 24 chrX 10306128 10306212 -166667928 + GA-rich Low_complexity Low_complexity 3 85 0 586 192 23 6 chrX 10306226 10306398 -166667742 + GA-rich Low_complexity Low_complexity 1 175 0 438 301 67 25 chrX 10306538 10306777 -166667363 + HAL1 LINE L1 2239 2487 -20 361 254 87 14 chrX 10306839 10306977 -166667163 - L1MC4a LINE L1 -1884 5924 5777 3118 150 58 81 chrX 10307031 10307723 -166666417 + LTR8 LTR ERV1 1 676 -15 867 302 89 27 chrX 10308067 10308518 -166665622 - L1MC4a LINE L1 -2070 5738 5260 1992 142 24 0 chrX 10308722 10309018 -166665122 + AluJb SINE Alu 1 303 -9 2038 87 6 87 chrX 10309797 10310118 -166664022 - AluSx SINE Alu -17 295 1 1345 198 62 56 chrX 10310198 10310521 -166663619 - MLT1D LTR MaLR -1 504 180 4425 162 63 22 chrX 10310533 10311475 -166662665 - L1MB4 LINE L1 0 6180 5185 1811 158 44 0 chrX 10311475 10311773 -166662367 - AluY SINE Alu 0 311 1 4425 162 63 22 chrX 10311773 10311842 -166662298 - L1MB4 LINE L1 -995 5185 5120 481 164 418 0 chrX 10311852 10311986 -166662154 - MLT1D LTR MaLR -315 190 1 1728 62 0 5 chrX 10312141 10312349 -166661791 + AluY SINE Alu 87 293 -18 12057 209 50 31 chrX 10312349 10312472 -166661668 + L1MD2 LINE L1 2004 2123 -4630 2184 132 0 0 chrX 10312472 10312775 -166661365 - AluSx SINE Alu -9 303 1 12057 209 50 31 chrX 10312775 10314234 -166659906 + L1MD2 LINE L1 2123 3553 -3200 1711 174 0 51 chrX 10314234 10314550 -166659590 + AluJb SINE Alu 1 300 -12 12057 209 50 31 chrX 10314550 10315710 -166658430 + L1MD2 LINE L1 3553 4689 -2064 1737 158 36 75 chrX 10315710 10315949 -166658191 - MER7A DNA MER2_type -2692 346 126 2217 111 7 0 chrX 10315949 10316247 -166657893 + AluSx SINE Alu 1 300 -12 1737 158 36 75 chrX 10316247 10316368 -166657772 - MER7A DNA MER2_type -2912 126 2 12057 209 50 31 chrX 10316368 10317085 -166657055 + L1MD2 LINE L1 4689 5391 -1362 1884 143 4 4 chrX 10317085 10317358 -166656782 - AluJb SINE Alu -39 273 1 12057 209 50 31 chrX 10317358 10318578 -166655562 + L1MD2 LINE L1 5391 6753 0 494 226 57 0 chrX 10318583 10318707 -166655433 + MER5B DNA MER1_type 1 131 -47 21 0 0 0 chrX 10318738 10318759 -166655381 + AT_rich Low_complexity Low_complexity 1 21 0 1502 190 105 38 chrX 10319134 10319784 -166654356 - L2 LINE L2 -188 3125 2422 588 215 82 0 chrX 10320248 10320383 -166653757 + L1MA9 LINE L1 5994 6139 -173 261 139 0 0 chrX 10320889 10320932 -166653208 + (CA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chrX 10321403 10321424 -166652716 + (T)n Simple_repeat Simple_repeat 1 21 0 1333 223 207 29 chrX 10321613 10322149 -166651991 - MLT1G LTR MaLR 0 590 1 1855 140 3 3 chrX 10322225 10322510 -166651630 + AluJb SINE Alu 2 286 -26 408 306 65 0 chrX 10322519 10322643 -166651497 - L2 LINE L2 -5 3267 3136 2076 100 4 0 chrX 10323604 10323873 -166650267 + AluSx SINE Alu 28 297 -15 1314 201 70 72 chrX 10324138 10324358 -166649782 - L1MC5 LINE L1 -225 7736 7517 1965 118 44 30 chrX 10324358 10324654 -166649486 - AluSx SINE Alu -12 300 1 1314 201 70 72 chrX 10324654 10324950 -166649190 - L1MC5 LINE L1 -444 7517 7221 880 183 1 10 chrX 10324951 10325267 -166648873 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 10325267 10325292 -166648848 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 1221 176 51 16 chrX 10325297 10325552 -166648588 - L1MC5 LINE L1 -737 7224 6961 879 188 27 104 chrX 10325677 10325975 -166648165 - L1MC5 LINE L1 -1044 6917 6643 1868 137 46 3 chrX 10327711 10327996 -166646144 + AluSx SINE Alu 1 297 -15 2185 126 3 0 chrX 10328151 10328445 -166645695 + AluSx SINE Alu 1 295 -17 1122 127 0 0 chrX 10328551 10328709 -166645431 + AluSg/x SINE Alu 143 300 -10 296 224 60 60 chrX 10329174 10329290 -166644850 - MER5B DNA MER1_type -59 119 4 221 204 56 0 chrX 10329325 10329379 -166644761 + MER5A DNA MER1_type 40 96 -93 24 0 0 0 chrX 10330038 10330062 -166644078 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 17 26 chrX 10330205 10330321 -166643819 + MIR SINE MIR 1 115 -147 2336 89 3 0 chrX 10330752 10331043 -166643097 + AluSx SINE Alu 1 292 -20 436 272 43 19 chrX 10331456 10331618 -166642522 + MIR SINE MIR 35 200 -62 1095 291 46 36 chrX 10332289 10332766 -166641374 - L1MCb LINE L1 -4992 1053 572 685 263 52 65 chrX 10333041 10333445 -166640695 - L1MCb LINE L1 -5669 376 93 2429 73 7 3 chrX 10333761 10334064 -166640076 + AluSc SINE Alu 1 304 -5 2161 111 3 43 chrX 10337065 10337210 -166636930 + AluJo SINE Alu 1 150 -162 2067 139 0 0 chrX 10337210 10337511 -166636629 + AluSx SINE Alu 1 301 -11 2161 111 3 43 chrX 10337511 10337689 -166636451 + AluJo SINE Alu 150 311 -1 2269 136 29 0 chrX 10338466 10338840 -166635300 + L1MA5 LINE L1 5909 6293 -7 1668 125 26 68 chrX 10338972 10339283 -166634857 - AluJb SINE Alu -14 298 1 1221 206 117 57 chrX 10339675 10340112 -166634028 - MLT1C LTR MaLR -4 463 1 791 223 56 44 chrX 10340224 10340475 -166633665 - L1MB8 LINE L1 -6 6172 5919 1827 176 3 3 chrX 10340477 10340772 -166633368 - AluJb SINE Alu -17 295 1 198 91 30 0 chrX 10340834 10340867 -166633273 + MER5A DNA MER1_type 42 75 -114 420 244 130 37 chrX 10340944 10341183 -166632957 - L1ME4a LINE L1 -236 5885 5628 7886 16 0 15 chrX 10341275 10342677 -166631463 + L1PA2 LINE L1 4766 6152 -3 1911 166 0 10 chrX 10342792 10343093 -166631047 - AluJb SINE Alu -14 298 1 200 111 28 0 chrX 10343132 10343168 -166630972 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 2495 87 0 0 chrX 10343646 10343956 -166630184 - AluSg SINE Alu 0 310 1 833 202 51 0 chrX 10344175 10344353 -166629787 - MER5A DNA MER1_type -2 187 1 1988 153 0 34 chrX 10345253 10345574 -166628566 + AluJo SINE Alu 1 310 -2 26 50 0 0 chrX 10345591 10345631 -166628509 + AT_rich Low_complexity Low_complexity 1 40 0 537 16 0 0 chrX 10347394 10347456 -166626684 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 2169 47 8 0 chrX 10347462 10347716 -166626424 - AluY SINE Alu -54 257 2 2535 77 0 0 chrX 10348221 10348532 -166625608 - AluY SINE Alu 0 311 1 432 104 0 0 chrX 10348556 10348623 -166625517 + (TG)n Simple_repeat Simple_repeat 1 67 0 247 108 31 46 chrX 10350180 10350224 -166623916 - L1MB2 LINE L1 0 6171 6127 2249 120 0 0 chrX 10350224 10350525 -166623615 - AluSq SINE Alu -12 301 1 247 108 31 46 chrX 10350525 10350545 -166623595 - L1MB2 LINE L1 -44 6127 6108 492 283 114 42 chrX 10350978 10351339 -166622801 + L1ME4a LINE L1 5653 6039 -82 1121 152 13 65 chrX 10351628 10351723 -166622417 + MER20 DNA MER1_type 1 99 -120 188 65 0 32 chrX 10351723 10351754 -166622386 + (CGGGGG)n Simple_repeat Simple_repeat 5 34 0 1121 152 13 65 chrX 10351754 10351889 -166622251 + MER20 DNA MER1_type 99 219 0 1851 167 0 20 chrX 10351962 10352262 -166621878 + AluJb SINE Alu 1 294 -18 216 0 0 0 chrX 10352262 10352286 -166621854 + (TA)n Simple_repeat Simple_repeat 2 25 0 279 246 35 53 chrX 10352331 10352445 -166621695 + MIR SINE MIR 36 147 -115 359 252 32 16 chrX 10352776 10352899 -166621241 + MIR SINE MIR 12 136 -126 398 248 25 16 chrX 10352928 10353049 -166621091 + MER94 DNA DNA 13 134 0 1897 126 10 34 chrX 10353063 10353357 -166620783 + AluJb SINE Alu 2 288 -24 2378 68 0 7 chrX 10353371 10353689 -166620451 + AluY SINE Alu 1 311 0 224 268 196 0 chrX 10353689 10353786 -166620354 + MIR SINE MIR 147 262 0 424 221 71 0 chrX 10354733 10354846 -166619294 + L1ME3A LINE L1 6042 6162 -8 461 287 134 15 chrX 10354931 10355133 -166619007 - MER112 DNA MER1_type -12 248 23 366 284 68 41 chrX 10355155 10355339 -166618801 + MIR SINE MIR 7 194 -65 641 308 80 49 chrX 10355944 10356431 -166617709 - L2 LINE L2 -4 3309 2808 306 0 0 0 chrX 10356841 10356875 -166617265 + (CA)n Simple_repeat Simple_repeat 2 35 0 2203 117 0 10 chrX 10357029 10357337 -166616803 - AluJb SINE Alu -7 305 1 208 283 80 59 chrX 10357813 10358000 -166616140 - MIR SINE MIR -55 207 17 285 301 61 39 chrX 10360173 10360402 -166613738 + MLT1K LTR MaLR 346 579 -9 920 180 68 10 chrX 10360529 10360735 -166613405 + L1MB7 LINE L1 5966 6183 -1 2050 134 0 7 chrX 10360744 10361028 -166613112 + AluSx SINE Alu 1 282 -30 1761 133 0 8 chrX 10361061 10361316 -166612824 + AluSx SINE Alu 1 253 -59 32 0 0 0 chrX 10361316 10361348 -166612792 + AT_rich Low_complexity Low_complexity 1 32 0 249 284 27 0 chrX 10361861 10361935 -166612205 + MLT2F LTR ERVL 333 408 -255 1228 190 136 8 chrX 10362203 10362461 -166611679 - AluJo SINE Alu -21 291 1 183 42 0 0 chrX 10362699 10362723 -166611417 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 1033 75 0 0 chrX 10362842 10362962 -166611178 + AluY SINE Alu 1 120 -191 218 109 65 0 chrX 10363063 10363109 -166611031 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 8674 106 27 12 chrX 10363144 10364424 -166609716 - HSMAR2 DNA Mariner -3 1299 2 1123 142 0 19 chrX 10364889 10365051 -166609089 - FRAM SINE Alu -20 156 1 1824 177 79 60 chrX 10365983 10366479 -166607661 + MLT1D LTR MaLR 1 505 0 1943 123 53 17 chrX 10368108 10368409 -166605731 + AluJo SINE Alu 1 312 0 204 244 58 23 chrX 10368748 10368834 -166605306 - L2 LINE L2 -1 3271 3183 452 202 0 39 chrX 10369616 10369720 -166604420 - MLT1A2 LTR MaLR -274 100 1 258 111 0 0 chrX 10370272 10370308 -166603832 + Tigger5 DNA MER2_type 2262 2297 -26 * 369 294 18 9 chrX 10370288 10370397 -166603743 - MER47A DNA MER2_type -256 110 1 1944 183 138 20 chrX 10370419 10370867 -166603273 + MLT1D LTR MaLR 4 504 -1 530 283 81 9 chrX 10370880 10371103 -166603037 + MLT1J LTR MaLR 68 306 -205 414 282 155 8 chrX 10371418 10371670 -166602470 + L1ME3 LINE L1 5542 5830 -332 1953 151 0 10 chrX 10371929 10372233 -166601907 - AluJb SINE Alu -11 301 1 325 230 262 21 chrX 10373054 10373241 -166600899 + MIR SINE MIR 31 262 0 4682 156 19 31 chrX 10373262 10374126 -166600014 - L1MB4 LINE L1 -2 6178 5326 854 213 107 0 chrX 10375930 10376099 -166598041 - MER58A DNA MER1_type 0 224 38 1728 147 6 69 chrX 10379645 10379978 -166594162 - AluJb SINE Alu 0 312 1 386 75 94 0 chrX 10380464 10380544 -166593596 + AluSp/q SINE Alu 229 313 0 2115 152 0 0 chrX 10380703 10381012 -166593128 + AluJo SINE Alu 1 309 -3 587 204 114 48 chrX 10383697 10383864 -166590276 - MER97c DNA MER1_type? -912 178 1 2358 106 0 0 chrX 10384064 10384375 -166589765 - AluSx SINE Alu -1 311 1 189 0 0 0 chrX 10384387 10384408 -166589732 + (T)n Simple_repeat Simple_repeat 1 21 0 399 190 13 0 chrX 10384887 10384966 -166589174 - MER103 DNA DNA -46 120 41 1271 168 0 24 chrX 10385892 10386100 -166588040 + AluJb SINE Alu 1 203 -109 653 247 49 22 chrX 10386415 10386638 -166587502 - L1ME LINE L1 -374 5747 5519 408 277 139 36 chrX 10386933 10387207 -166586933 - L1ME LINE L1 -1112 5034 4733 369 0 0 0 chrX 10387890 10387931 -166586209 + (TG)n Simple_repeat Simple_repeat 2 42 0 534 130 0 13 chrX 10387967 10388044 -166586096 - MER8 DNA MER2_type 0 239 164 378 0 0 0 chrX 10388633 10388675 -166585465 + (TCTG)n Simple_repeat Simple_repeat 2 43 0 396 225 0 12 chrX 10390351 10390431 -166583709 - MER8 DNA MER2_type -159 80 2 1179 117 31 0 chrX 10390453 10390649 -166583491 + L1MA6 LINE L1 6099 6300 0 2401 77 3 0 chrX 10391514 10391837 -166582303 + AluSq SINE Alu 1 324 0 489 260 0 0 chrX 10392423 10392527 -166581613 - AluJo SINE Alu -176 136 33 240 214 0 0 chrX 10392951 10393007 -166581133 + CT-rich Low_complexity Low_complexity 4 59 0 258 333 60 0 chrX 10393761 10393845 -166580295 + MIR SINE MIR 60 148 -60 1410 138 35 13 chrX 10394399 10394630 -166579510 + MER46A DNA MER2_type 1 236 0 2011 107 36 4 chrX 10394769 10395049 -166579091 - AluSc SINE Alu -20 289 1 3190 107 57 2 chrX 10395124 10395612 -166578528 + L1MB3 LINE L1 5667 6181 -2 228 130 0 43 chrX 10396109 10396155 -166577985 - MLT1E3 LTR MaLR -13 611 568 581 67 45 11 chrX 10396185 10396274 -166577866 + L1PA13 LINE L1 6072 6163 0 433 294 17 24 chrX 10396344 10396513 -166577627 - MIR SINE MIR -62 146 17 1961 135 0 55 chrX 10397256 10397582 -166576558 - AluJo SINE Alu -4 308 1 184 309 43 21 chrX 10397582 10397676 -166576464 + L2 LINE L2 2394 2489 -825 213 206 0 59 chrX 10397899 10397967 -166576173 - L2 LINE L2 -194 3078 3015 1319 179 9 5 chrX 10398059 10398282 -166575858 + MER58A DNA MER1_type 1 224 0 605 276 84 21 chrX 10399275 10399561 -166574579 - L1MC4a LINE L1 -1884 5924 5621 1872 153 52 0 chrX 10399588 10399755 -166574385 - AluJb SINE Alu -8 304 114 216 0 0 0 chrX 10399755 10399779 -166574361 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1872 153 52 0 chrX 10399779 10399898 -166574242 - AluJb SINE Alu -198 114 3 564 95 0 0 chrX 10400137 10400221 -166573919 + (CA)n Simple_repeat Simple_repeat 2 85 0 1641 181 14 24 chrX 10400743 10401036 -166573104 - AluJo SINE Alu -22 290 1 1329 205 106 27 chrX 10401091 10401495 -166572645 - Charlie4a DNA MER1_type -24 484 49 305 132 57 0 chrX 10453095 10453148 -166520992 - MLT1G LTR MaLR -32 558 503 2538 93 30 8 chrX 10454268 10454633 -166519507 + THE1C LTR MaLR 1 373 -2 287 311 29 0 chrX 10456109 10456224 -166517916 + MER20 DNA MER1_type 76 197 -22 884 134 17 17 chrX 10456383 10456621 -166517519 + CT-rich Low_complexity Low_complexity 1 238 0 199 235 7 7 chrX 10457027 10457163 -166516977 + (TA)n Simple_repeat Simple_repeat 2 137 0 32 43 0 0 chrX 10457176 10457222 -166516918 + AT_rich Low_complexity Low_complexity 1 46 0 2335 83 0 3 chrX 10457499 10457828 -166516312 + AluSq SINE Alu 1 328 0 180 0 0 0 chrX 10459080 10459100 -166515040 + (T)n Simple_repeat Simple_repeat 1 20 0 1574 189 30 20 chrX 10459711 10460013 -166514127 + AluJo SINE Alu 1 305 -7 723 162 133 40 chrX 10460239 10460382 -166513758 - MER5A DNA MER1_type 0 189 26 186 43 0 0 chrX 10460382 10460405 -166513735 + (CTG)n Simple_repeat Simple_repeat 1 23 0 723 162 133 40 chrX 10460405 10460434 -166513706 - MER5A DNA MER1_type -163 26 1 201 147 0 0 chrX 10460661 10460695 -166513445 + (TG)n Simple_repeat Simple_repeat 1 34 0 265 324 58 53 chrX 10460794 10461019 -166513121 + MIR SINE MIR 24 249 -13 310 284 17 35 chrX 10462370 10462486 -166511654 + MIR3 SINE MIR 55 168 -40 659 124 0 0 chrX 10462694 10462791 -166511349 + L1PB3 LINE L1 6054 6150 -4 205 132 0 53 chrX 10462964 10463002 -166511138 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 420 303 0 35 chrX 10463645 10463787 -166510353 + MIR SINE MIR 13 149 -113 874 271 102 11 chrX 10463790 10464118 -166510022 - LTR16A LTR ERVL 0 457 89 309 314 71 82 chrX 10464243 10464887 -166509253 + L1MEc LINE L1 211 847 -5549 1455 187 4 0 chrX 10465170 10465405 -166508735 + AluJb SINE Alu 1 236 -76 434 68 0 0 chrX 10465455 10465514 -166508626 + AluJb SINE Alu 240 298 -14 237 345 43 17 chrX 10466480 10466596 -166507544 - L2 LINE L2 0 3272 3154 524 238 159 0 chrX 10466613 10466764 -166507376 + MER5A DNA MER1_type 9 183 -6 584 190 56 67 chrX 10466779 10466958 -166507182 - MER5B DNA MER1_type 0 178 2 219 267 13 27 chrX 10467645 10467720 -166506420 + L3 LINE CR1 1403 1476 -101 253 146 0 21 chrX 10468144 10468192 -166505948 - MER94 DNA DNA -34 100 54 309 190 25 63 chrX 10468762 10468841 -166505299 - MER5B DNA MER1_type -101 77 2 2233 105 0 10 chrX 10468865 10469169 -166504971 + AluSx SINE Alu 1 301 -11 1435 192 28 9 chrX 10472288 10472606 -166501534 - MER33 DNA MER1_type 0 324 1 24 32 0 0 chrX 10472606 10472637 -166501503 + AT_rich Low_complexity Low_complexity 1 31 0 2418 68 28 0 chrX 10472642 10472964 -166501176 - L1MA1 LINE L1 -9 6293 5963 445 276 6 71 chrX 10473183 10473353 -166500787 + MIR3 SINE MIR 42 200 -8 703 172 25 37 chrX 10473604 10473836 -166500304 + AluJb SINE Alu 2 312 0 1934 134 0 11 chrX 10475007 10475291 -166498849 + AluJo SINE Alu 7 287 -25 200 31 62 0 chrX 10475805 10475837 -166498303 + A-rich Low_complexity Low_complexity 2 35 0 2757 86 44 3 chrX 10475985 10476526 -166497614 - MER51A LTR ERV1 0 634 1 * 2933 195 26 29 chrX 10476526 10477175 -166496965 - LTR65 LTR ERV1 -22 647 1 180 0 0 0 chrX 10477216 10477236 -166496904 + (A)n Simple_repeat Simple_repeat 1 20 0 909 168 10 64 chrX 10478012 10478215 -166495925 - MER20 DNA MER1_type 0 219 28 216 255 0 0 chrX 10478278 10478325 -166495815 + L2 LINE L2 3265 3311 -2 872 152 84 22 chrX 10478522 10478700 -166495440 + MER5A DNA MER1_type 1 189 0 2584 47 3 0 chrX 10478715 10479015 -166495125 - AluY SINE Alu -10 301 1 2200 107 0 0 chrX 10479120 10479451 -166494689 - AluSg SINE Alu 0 331 1 1109 182 108 8 chrX 10479905 10480163 -166493977 + MER46C DNA MER2_type 2 285 -53 2973 46 11 19 chrX 10481686 10482058 -166492082 - L1PA8A LINE L1 0 6131 5763 204 241 35 92 chrX 10482465 10482606 -166491534 - MIR3 SINE MIR -61 147 15 409 187 13 0 chrX 10482833 10482908 -166491232 + L1ME1 LINE L1 6042 6117 -49 399 180 0 0 chrX 10483038 10483149 -166490991 + CT-rich Low_complexity Low_complexity 2 112 0 585 0 0 0 chrX 10483151 10483216 -166490924 + (CA)n Simple_repeat Simple_repeat 1 65 0 747 264 87 20 chrX 10483234 10483488 -166490652 - MLT1L LTR MaLR -344 271 1 201 339 0 0 chrX 10484034 10484090 -166490050 + C-rich Low_complexity Low_complexity 5 60 0 1793 144 0 11 chrX 10490366 10490650 -166483490 - AluJb SINE Alu -2 310 30 225 0 0 0 chrX 10490659 10490684 -166483456 + (T)n Simple_repeat Simple_repeat 1 25 0 1761 50 59 0 chrX 10490693 10490913 -166483227 - AluY SINE Alu -77 234 2 4321 154 8 1 chrX 10491732 10492389 -166481751 + Tigger1 DNA MER2_type 1 661 -1757 896 121 0 0 chrX 10492389 10492505 -166481635 + FLAM_C SINE Alu 2 117 -26 405 0 0 0 chrX 10492505 10492550 -166481590 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3633 98 31 0 chrX 10492550 10493062 -166481078 + Tigger1 DNA MER2_type 650 1177 -1241 911 127 0 8 chrX 10493062 10493188 -166480952 + FLAM_C SINE Alu 2 126 -17 225 65 0 0 chrX 10493444 10493475 -166480665 + (T)n Simple_repeat Simple_repeat 1 31 0 2442 89 0 6 chrX 10493778 10494092 -166480048 + AluSx SINE Alu 1 312 0 1879 146 0 24 chrX 10494248 10494542 -166479598 + AluJb SINE Alu 3 289 -23 184 363 52 37 chrX 10494751 10494886 -166479254 + L2 LINE L2 3132 3268 -4 210 342 135 9 chrX 10495609 10495720 -166478420 - L2 LINE L2 -3 3269 3145 379 284 9 26 chrX 10496329 10496445 -166477695 + L2 LINE L2 3199 3312 -1 2404 93 3 3 chrX 10496823 10497133 -166477007 + AluSx SINE Alu 1 310 -2 185 313 71 9 chrX 10497663 10497775 -166476365 + MIR SINE MIR 130 248 -14 500 244 192 6 chrX 10498623 10498779 -166475361 + MER5A DNA MER1_type 4 188 -1 635 337 4 16 chrX 10499076 10499331 -166474809 + MIR SINE MIR 8 259 -3 186 281 0 0 chrX 10499639 10499696 -166474444 - L2 LINE L2 -1 3312 3256 643 145 76 0 chrX 10500033 10500164 -166473976 - L1MA8 LINE L1 -3 6288 6148 1927 149 3 0 chrX 10501443 10501725 -166472415 + AluJo SINE Alu 1 283 -29 8806 99 21 2 chrX 10501825 10503036 -166471104 + Tigger1 DNA MER2_type 1184 2418 0 219 146 0 0 chrX 10503621 10503662 -166470478 + (A)n Simple_repeat Simple_repeat 1 41 0 1453 233 192 13 chrX 10504642 10505115 -166469025 - MLT1G LTR MaLR -32 558 1 1822 135 10 61 chrX 10506717 10507029 -166467111 + AluJo SINE Alu 1 296 -16 2018 126 37 0 chrX 10507545 10507839 -166466301 - AluJo SINE Alu -7 305 1 182 302 9 43 chrX 10508632 10508748 -166465392 - L2 LINE L2 -242 3030 2919 255 254 62 54 chrX 10509975 10510105 -166464035 + MIR SINE MIR 34 164 -98 1984 125 9 41 chrX 10510222 10510492 -166463648 - L1MB2 LINE L1 -3 6168 5910 2428 67 7 0 chrX 10510492 10510791 -166463349 - AluSp SINE Alu -10 303 3 1984 125 9 41 chrX 10510791 10510864 -166463276 - L1MB2 LINE L1 -261 5910 5836 717 163 16 0 chrX 10511880 10512009 -166462131 - MER5A DNA MER1_type 0 189 59 279 0 0 0 chrX 10512011 10512042 -166462098 + (CTG)n Simple_repeat Simple_repeat 1 31 0 1722 189 0 11 chrX 10513099 10513384 -166460756 + AluJb SINE Alu 1 282 -30 304 287 28 0 chrX 10513398 10513506 -166460634 + L1MC4 LINE L1 6595 6705 -1337 361 125 23 0 chrX 10513506 10513594 -166460546 + (TA)n Simple_repeat Simple_repeat 2 91 0 235 238 49 0 chrX 10513627 10513749 -166460391 + (TA)n Simple_repeat Simple_repeat 1 128 0 2134 124 0 31 chrX 10514953 10515275 -166458865 - AluSx SINE Alu 0 312 1 211 246 49 16 chrX 10515418 10515479 -166458661 - L3 LINE CR1 -672 905 843 463 269 43 0 chrX 10515578 10515719 -166458421 + MIR SINE MIR 39 185 -77 1868 159 0 3 chrX 10517221 10517504 -166456636 + AluJb SINE Alu 1 282 -30 330 67 0 0 chrX 10517665 10517710 -166456430 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 184 261 22 0 chrX 10517726 10517772 -166456368 - L2 LINE L2 -38 3234 3188 306 233 39 35 chrX 10518061 10518227 -166455913 - MIR SINE MIR -69 139 23 822 138 0 24 chrX 10519960 10520083 -166454057 + FLAM_C SINE Alu 1 120 -23 2332 83 7 0 chrX 10520385 10520685 -166453455 - AluSx SINE Alu -9 303 2 304 307 113 33 chrX 10520714 10521022 -166453118 - L1ME4a LINE L1 -11 6110 5757 2280 108 0 0 chrX 10521022 10521329 -166452811 - AluSx SINE Alu -5 307 1 304 307 113 33 chrX 10521329 10521444 -166452696 - L1ME4a LINE L1 -364 5757 5653 690 204 44 17 chrX 10521444 10521625 -166452515 + MIR SINE MIR 77 262 0 306 270 45 36 chrX 10521690 10521801 -166452339 - L1ME4a LINE L1 -552 5569 5458 917 206 103 53 chrX 10522236 10522261 -166451879 + L1M4 LINE L1 4779 4801 -1345 1867 181 30 0 chrX 10522261 10522592 -166451548 - MER58B DNA MER1_type 0 341 1 917 206 103 53 chrX 10522592 10522701 -166451439 + L1M4 LINE L1 4801 4903 -1243 2486 65 0 46 chrX 10522701 10523025 -166451115 + AluY SINE Alu 1 309 -2 917 206 103 53 chrX 10523025 10523287 -166450853 + L1M4 LINE L1 4903 5196 -950 2099 136 13 7 chrX 10524278 10524586 -166449554 - AluSx SINE Alu -2 310 1 2181 96 0 14 chrX 10524776 10525096 -166449044 - AluSx SINE Alu 0 312 1 2015 141 34 3 chrX 10525098 10525396 -166448744 - AluJb SINE Alu -5 307 1 2414 94 0 7 chrX 10525679 10525986 -166448154 - AluSg SINE Alu -5 305 1 207 0 0 0 chrX 10526164 10526187 -166447953 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 234 47 37 chrX 10526942 10526987 -166447153 + MIR SINE MIR 152 195 -67 1585 173 0 11 chrX 10526987 10527247 -166446893 + AluJo SINE Alu 18 274 -38 186 43 0 0 chrX 10527251 10527274 -166446866 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 278 234 47 37 chrX 10527274 10527330 -166446810 + MIR SINE MIR 197 259 -3 655 139 10 0 chrX 10528677 10528778 -166445362 - MLT1B LTR MaLR -38 352 251 * 849 168 0 7 chrX 10528771 10528908 -166445232 - MLT1B LTR MaLR -254 136 1 1642 136 106 23 chrX 10528971 10529273 -166444867 + MLT1A1 LTR MaLR 3 329 -36 280 304 3 0 chrX 10529781 10529870 -166444270 - MIR SINE MIR -50 158 67 2234 124 0 0 chrX 10530127 10530426 -166443714 + AluSx SINE Alu 1 299 -13 436 191 21 11 chrX 10530435 10530529 -166443611 - L1ME4a LINE L1 -71 6050 5956 200 313 0 0 chrX 10530663 10530727 -166443413 - L2 LINE L2 -1 3271 3208 425 285 147 48 chrX 10530727 10531039 -166443101 - L1ME4a LINE L1 -83 6038 5696 669 139 46 0 chrX 10531041 10531149 -166442991 + AluSg/x SINE Alu 180 292 -17 445 116 43 49 chrX 10531215 10531537 -166442603 + (TA)n Simple_repeat Simple_repeat 1 320 0 2089 128 0 3 chrX 10532751 10533040 -166441100 - AluJb SINE Alu -24 288 1 25 31 0 0 chrX 10535239 10535271 -166438869 + AT_rich Low_complexity Low_complexity 1 32 0 2594 97 33 15 chrX 10535418 10535809 -166438331 - L1MA2 LINE L1 -107 6197 5800 1886 159 32 60 chrX 10535913 10536164 -166437976 - L1MD2 LINE L1 0 6359 6122 2177 141 0 3 chrX 10536164 10536477 -166437663 - AluJb SINE Alu 0 312 1 1886 159 32 60 chrX 10536477 10536627 -166437513 - L1MD2 LINE L1 -237 6122 5969 724 135 18 0 chrX 10537565 10537676 -166436464 - AluJo/FRAM SINE Alu -20 292 180 864 90 0 0 chrX 10537676 10537787 -166436353 + AluSp/q SINE Alu 188 298 -15 2585 68 3 0 chrX 10538352 10538661 -166435479 + AluSq SINE Alu 1 310 -3 1079 139 5 48 chrX 10538717 10538934 -166435206 + MER20 DNA MER1_type 1 217 -2 194 136 51 17 chrX 10539119 10539178 -166434962 + GA-rich Low_complexity Low_complexity 1 61 0 1895 151 17 0 chrX 10542618 10542916 -166431224 - AluJb SINE Alu -9 303 1 181 325 26 13 chrX 10543030 10543107 -166431033 + MIR3 SINE MIR 87 164 -44 718 129 40 16 chrX 10543130 10543254 -166430886 + AluJb SINE Alu 7 133 -179 779 159 15 8 chrX 10543575 10543707 -166430433 - FLAM_A SINE Alu 0 133 1 827 196 15 39 chrX 10543879 10544083 -166430057 + Charlie2 DNA MER1_type 1884 2082 -780 2306 81 3 44 chrX 10544084 10544405 -166429735 + AluSg SINE Alu 1 308 -2 2172 93 0 48 chrX 10544406 10544717 -166429423 + AluSc SINE Alu 1 296 -13 2110 139 3 7 chrX 10544855 10545164 -166428976 + AluSx SINE Alu 1 308 -4 2457 89 0 0 chrX 10545669 10545973 -166428167 + AluSx SINE Alu 1 304 -8 1535 144 7 48 chrX 10545978 10546270 -166427870 + AluJo SINE Alu 1 280 -32 392 176 162 14 chrX 10546475 10546617 -166427523 - L1ME4a LINE L1 -204 5917 5755 242 306 149 33 chrX 10546619 10546740 -166427400 - L2 LINE L2 -16 3256 3122 304 250 40 0 chrX 10546868 10546944 -166427196 - L1ME4a LINE L1 -390 5731 5653 1751 151 13 16 chrX 10546948 10547132 -166427008 - AluJb SINE Alu -2 310 126 207 0 0 0 chrX 10547132 10547155 -166426985 + (TG)n Simple_repeat Simple_repeat 2 24 0 1751 151 13 16 chrX 10547155 10547281 -166426859 - AluJb SINE Alu -186 126 1 571 255 133 53 chrX 10547478 10547780 -166426360 + L2 LINE L2 2988 3313 0 887 112 0 0 chrX 10548156 10548281 -166425859 + AluSq/x SINE Alu 11 135 -177 1634 134 19 86 chrX 10548281 10548595 -166425545 + AluSx SINE Alu 1 293 -19 985 206 5 16 chrX 10548739 10548928 -166425212 + MER5A DNA MER1_type 1 187 -2 547 273 137 66 chrX 10549110 10549255 -166424885 + L1MD1 LINE L1 407 540 -5882 1974 135 23 0 chrX 10549255 10549559 -166424581 + AluJb SINE Alu 1 311 -1 547 273 137 66 chrX 10549559 10549956 -166424184 + L1MD1 LINE L1 540 904 -5518 1209 224 98 85 chrX 10550071 10550544 -166423596 + L1MD1 LINE L1 811 1277 -5218 185 0 40 0 chrX 10550544 10550569 -166423571 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1756 128 0 19 chrX 10550569 10550834 -166423306 - AluSx SINE Alu -32 280 21 1209 224 98 85 chrX 10550834 10550876 -166423264 + L1MD1 LINE L1 1277 1317 -5178 1730 128 13 26 chrX 10550876 10551181 -166422959 - AluJb SINE Alu -11 301 1 1209 224 98 85 chrX 10551181 10551342 -166422798 + L1MD1 LINE L1 1317 1623 -4872 4257 241 59 23 chrX 10551403 10552715 -166421425 + L1MB8 LINE L1 3328 4686 -1460 1130 235 16 29 chrX 10552696 10553007 -166421133 + L1MD1 LINE L1 4219 4525 -2416 * 2353 223 42 17 chrX 10552999 10553641 -166420499 + L1MD1 LINE L1 5461 6118 -823 1944 114 43 0 chrX 10553641 10553940 -166420200 + AluSx SINE Alu 1 312 0 2076 105 3 3 chrX 10553963 10554258 -166419882 + AluSx SINE Alu 13 307 -5 1553 113 17 0 chrX 10554261 10554500 -166419640 + L1MD1 LINE L1 6482 6724 -430 2211 102 0 0 chrX 10554500 10554795 -166419345 - AluSx SINE Alu -17 295 1 868 154 47 6 chrX 10554798 10554967 -166419173 + L1MD1 LINE L1 6862 7037 0 447 260 194 26 chrX 10554996 10555176 -166418964 + L3 LINE CR1 1113 1340 -237 1677 158 20 17 chrX 10555176 10555473 -166418667 + AluJo SINE Alu 1 298 -14 447 260 194 26 chrX 10555473 10555519 -166418621 + L3 LINE CR1 1340 1377 -200 809 157 8 0 chrX 10555519 10555653 -166418487 + FLAM_C SINE Alu 1 135 -8 867 107 0 0 chrX 10555656 10555777 -166418363 + AluJb SINE Alu 186 306 -6 1803 174 28 9 chrX 10556683 10557121 -166417019 + L1MB8 LINE L1 5167 5613 -571 708 143 107 0 chrX 10557121 10557233 -166416907 + FLAM_C SINE Alu 1 124 -19 263 219 78 0 chrX 10557236 10557300 -166416840 + L1MB8 LINE L1 5587 5655 -529 1385 132 27 81 chrX 10557308 10557603 -166416537 + L1MB8 LINE L1 5900 6178 0 2952 81 11 6 chrX 10557610 10558078 -166416062 - L1PA13 LINE L1 -507 5656 5187 3689 79 10 0 chrX 10558078 10558547 -166415593 + L1PA13 LINE L1 5665 6149 -14 283 75 57 0 chrX 10558547 10558600 -166415540 + L1MA7 LINE L1 6235 6290 -1 1378 132 6 105 chrX 10558691 10559016 -166415124 + AluSx SINE Alu 11 303 -9 194 79 0 26 chrX 10559460 10559498 -166414642 + (CAAAAA)n Simple_repeat Simple_repeat 3 39 0 242 197 26 40 chrX 10559572 10559648 -166414492 + C-rich Low_complexity Low_complexity 3 77 0 292 234 9 19 chrX 10559950 10560057 -166414083 + (CGG)n Simple_repeat Simple_repeat 3 108 0 2297 83 0 22 chrX 10560459 10560773 -166413367 - AluSx SINE Alu -5 307 1 2095 180 146 25 chrX 10560773 10561450 -166412690 + Charlie2 DNA MER1_type 2076 2834 -28 365 257 47 17 chrX 10561464 10561606 -166412534 - L1MC/D LINE L1 -461 5660 5541 581 286 13 13 chrX 10561894 10562048 -166412092 + L2 LINE L2 3116 3269 -3 456 219 265 13 chrX 10562109 10562260 -166411880 - MER3 DNA MER1_type -20 189 1 223 263 0 18 chrX 10562291 10562348 -166411792 + L2 LINE L2 3215 3270 -2 390 271 72 42 chrX 10562590 10562756 -166411384 + MIR SINE MIR 63 233 -29 1510 143 50 60 chrX 10562792 10563093 -166411047 + AluJo SINE Alu 6 303 -9 225 338 158 58 chrX 10563687 10563965 -166410175 - L2 LINE L2 -1 3271 2966 2228 83 0 0 chrX 10565057 10565346 -166408794 + AluSx SINE Alu 1 289 -23 196 179 32 16 chrX 10565346 10565469 -166408671 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 426 183 11 11 chrX 10565483 10565658 -166408482 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 304 147 40 0 chrX 10565658 10565733 -166408407 + (TATAA)n Simple_repeat Simple_repeat 2 79 0 395 101 82 0 chrX 10565738 10565897 -166408243 + (TA)n Simple_repeat Simple_repeat 2 173 0 275 253 181 12 chrX 10566244 10566327 -166407813 - L2 LINE L2 -42 3230 3134 391 318 59 12 chrX 10566898 10567068 -166407072 + MER5B DNA MER1_type 1 178 0 515 246 37 37 chrX 10567646 10567833 -166406307 + L1ME4a LINE L1 5933 6119 -2 1040 144 128 0 chrX 10567996 10568184 -166405956 + AluJb SINE Alu 85 296 -16 807 292 114 51 chrX 10568781 10569209 -166404931 - MLT1L LTR MaLR 0 615 161 432 333 88 22 chrX 10570403 10570803 -166403337 - L1ME4a LINE L1 -82 6039 5614 189 0 0 0 chrX 10570888 10570909 -166403231 + (TC)n Simple_repeat Simple_repeat 2 22 0 431 256 17 34 chrX 10571585 10571702 -166402438 - L2 LINE L2 -1 3312 3198 1759 151 7 10 chrX 10572565 10572863 -166401277 - AluJb SINE Alu -15 297 1 239 301 106 41 chrX 10573265 10573388 -166400752 + L2 LINE L2 3127 3257 -15 297 199 26 41 chrX 10573470 10573558 -166400582 + MIR SINE MIR 40 122 -111 310 255 21 32 chrX 10575281 10575375 -166398765 + MIR SINE MIR 50 142 -120 216 310 28 0 chrX 10576557 10576628 -166397512 + L2 LINE L2 3202 3274 -39 2180 96 0 7 chrX 10578521 10578813 -166395327 + AluSx SINE Alu 5 294 -18 282 256 155 23 chrX 10579192 10579321 -166394819 + MER103 DNA DNA 20 165 -1 2212 87 0 0 chrX 10580847 10581135 -166393005 + AluSx SINE Alu 1 288 -24 207 0 0 0 chrX 10581147 10581170 -166392970 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1862 142 3 17 chrX 10581225 10581521 -166392619 + AluJb SINE Alu 1 292 -20 320 217 11 54 chrX 10581632 10581724 -166392416 + MIR3 SINE MIR 92 179 -29 1557 142 30 10 chrX 10582253 10582549 -166391591 - AluY SINE Alu -9 302 1 29 0 0 0 chrX 10584004 10584033 -166390107 + AT_rich Low_complexity Low_complexity 1 29 0 2269 96 0 0 chrX 10586059 10586361 -166387779 - AluSx SINE Alu -10 302 1 2309 85 0 0 chrX 10587096 10587390 -166386750 - AluSx SINE Alu -18 294 1 198 0 0 0 chrX 10587865 10587887 -166386253 + (A)n Simple_repeat Simple_repeat 1 22 0 1959 92 14 4 chrX 10587887 10588168 -166385972 + AluSq SINE Alu 1 284 -29 557 244 103 0 chrX 10588400 10588556 -166385584 + MER5B DNA MER1_type 3 174 -4 326 208 14 0 chrX 10589798 10589870 -166384270 + MER3 DNA MER1_type 32 104 -105 * 615 242 28 79 chrX 10589819 10589933 -166384207 - MER3 DNA MER1_type -5 204 105 1474 146 73 15 chrX 10589933 10590207 -166383933 + AluJb SINE Alu 1 290 -22 615 242 28 79 chrX 10590207 10590307 -166383833 - MER3 DNA MER1_type -104 105 1 7195 40 13 0 chrX 10590356 10591729 -166382411 - L1PA8 LINE L1 -10 6162 4780 12374 80 34 1 chrX 10591729 10593452 -166380688 - L1P LINE L1 -1734 4412 2630 34 0 0 0 chrX 10593749 10593783 -166380357 + AT_rich Low_complexity Low_complexity 1 34 0 1462 185 10 14 chrX 10593798 10594090 -166380050 - AluJb SINE Alu -21 291 1 563 164 25 16 chrX 10594097 10594219 -166379921 - L1MB3 LINE L1 -2 6181 6059 2010 129 0 3 chrX 10594219 10594514 -166379626 + AluSx SINE Alu 1 294 -18 2132 104 0 3 chrX 10594524 10594821 -166379319 + AluSq SINE Alu 1 296 -17 849 201 48 43 chrX 10594851 10595086 -166379054 - L1MC1 LINE L1 0 6333 6123 1237 102 11 11 chrX 10595086 10595273 -166378867 - AluJb SINE Alu 0 312 126 2244 104 0 10 chrX 10595868 10596175 -166377965 + AluSx SINE Alu 1 304 -8 2124 114 0 44 chrX 10596323 10596458 -166377682 + AluSx SINE Alu 2 141 -171 2332 103 0 10 chrX 10596458 10596769 -166377371 + AluSq SINE Alu 1 308 -5 2124 114 0 44 chrX 10596769 10596949 -166377191 + AluSx SINE Alu 141 303 -9 486 294 127 30 chrX 10596984 10597314 -166376826 + MLT1J2 LTR MaLR 65 426 -24 25 31 0 0 chrX 10597617 10597649 -166376491 + AT_rich Low_complexity Low_complexity 1 32 0 1992 140 27 0 chrX 10597718 10598010 -166376130 - AluJb SINE Alu -12 300 1 366 152 0 30 chrX 10598425 10598491 -166375649 + MLT1I LTR MaLR 344 407 -2 219 36 0 0 chrX 10598548 10598576 -166375564 + (TCCCC)n Simple_repeat Simple_repeat 2 29 0 1784 152 3 18 chrX 10598576 10598859 -166375281 - AluJb SINE Alu -33 279 1 2166 125 0 3 chrX 10598965 10599260 -166374880 + AluSx SINE Alu 1 294 -18 432 307 127 5 chrX 10599523 10599712 -166374428 + L2 LINE L2 2430 2641 -673 1793 132 68 60 chrX 10599787 10599856 -166374284 - THE1C LTR MaLR -2 373 306 1838 161 0 10 chrX 10599856 10600155 -166373985 - AluSx SINE Alu -16 296 1 1793 132 68 60 chrX 10600155 10600455 -166373685 - THE1C LTR MaLR -69 306 1 2158 109 14 0 chrX 10600625 10600908 -166373232 - AluSx SINE Alu -25 287 1 2299 115 0 0 chrX 10602415 10602727 -166371413 - AluSx SINE Alu 0 312 1 3303 236 33 27 chrX 10602735 10603909 -166370231 - L1ME2 LINE L1 -1 6163 4981 267 325 0 0 chrX 10604217 10604297 -166369843 + MIR SINE MIR 46 125 -137 2346 104 0 0 chrX 10605230 10605528 -166368612 + AluSx SINE Alu 1 298 -14 2402 100 0 0 chrX 10606324 10606624 -166367516 + AluSx SINE Alu 1 300 -12 930 141 0 0 chrX 10606721 10606849 -166367291 - FRAM SINE Alu -16 160 33 2348 94 3 0 chrX 10607379 10607677 -166366463 + AluSx SINE Alu 1 299 -13 718 191 0 0 chrX 10608394 10608509 -166365631 - FLAM_A SINE Alu -17 116 2 234 304 35 35 chrX 10608823 10608938 -166365202 + MIR SINE MIR 22 136 -72 180 0 0 0 chrX 10609323 10609343 -166364797 + (T)n Simple_repeat Simple_repeat 1 20 0 2198 94 3 3 chrX 10609718 10610005 -166364135 - AluSq SINE Alu -26 287 1 785 191 31 80 chrX 10610279 10610567 -166363573 + L1MC5 LINE L1 7658 7931 -30 872 125 0 22 chrX 10610567 10610703 -166363437 + AluJo/FLAM SINE Alu 1 133 -169 1864 145 54 7 chrX 10610705 10611002 -166363138 + AluSx SINE Alu 1 311 -1 195 321 62 0 chrX 10611425 10611506 -166362634 + L2 LINE L2 3168 3253 -19 2028 158 0 3 chrX 10611913 10612224 -166361916 - AluJb SINE Alu -2 310 1 307 232 118 15 chrX 10612305 10612486 -166361654 + L1ME3A LINE L1 5754 5963 -207 435 38 0 0 chrX 10612495 10612548 -166361592 + (TG)n Simple_repeat Simple_repeat 2 54 0 2046 175 16 22 chrX 10612575 10612637 -166361503 - MLT1A1 LTR MaLR 0 365 304 2284 111 0 0 chrX 10612637 10612935 -166361205 - AluSx SINE Alu -14 298 1 2046 175 16 22 chrX 10612935 10613238 -166360902 - MLT1A1 LTR MaLR -61 304 2 738 184 58 35 chrX 10614615 10614789 -166359351 + MER5B DNA MER1_type 1 178 0 2442 99 0 0 chrX 10617345 10617657 -166356483 - AluSx SINE Alu 0 312 1 320 257 63 69 chrX 10617714 10617889 -166356251 + MIR3 SINE MIR 30 203 -5 2323 148 0 3 chrX 10618237 10618575 -166355565 - MER1B DNA MER1_type 0 337 1 198 0 0 0 chrX 10619096 10619118 -166355022 + (CA)n Simple_repeat Simple_repeat 2 23 0 22 35 0 0 chrX 10619301 10619330 -166354810 + AT_rich Low_complexity Low_complexity 1 29 0 2124 96 0 31 chrX 10619404 10619695 -166354445 - AluSx SINE Alu -8 304 23 230 285 30 85 chrX 10620714 10620914 -166353226 - MIR3 SINE MIR -1 207 19 1901 152 0 10 chrX 10621760 10622050 -166352090 - AluJb SINE Alu -25 287 1 512 197 51 8 chrX 10622050 10622167 -166351973 - MER58 DNA MER1_type -183 158 37 2005 108 7 28 chrX 10622320 10622606 -166351534 + AluSx SINE Alu 1 280 -32 185 0 0 39 chrX 10622607 10622633 -166351507 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 318 67 0 0 chrX 10622675 10622720 -166351420 + (TG)n Simple_repeat Simple_repeat 1 45 0 614 214 32 26 chrX 10622812 10622966 -166351174 - FRAM SINE Alu -16 160 6 1208 149 14 36 chrX 10623551 10623773 -166350367 + MER20 DNA MER1_type 1 217 -2 749 285 19 27 chrX 10623829 10624092 -166350048 - MARNA DNA Mariner -68 518 258 303 296 82 15 chrX 10624141 10624276 -166349864 - MIR SINE MIR -93 169 26 752 177 100 0 chrX 10624321 10624451 -166349689 + AluJb SINE Alu 131 273 -39 225 272 7 116 chrX 10624506 10624653 -166349487 - MARNA DNA Mariner -405 181 51 21 0 0 0 chrX 10624672 10624693 -166349447 + AT_rich Low_complexity Low_complexity 1 21 0 1478 170 31 71 chrX 10625045 10625115 -166349025 + L1M3 LINE L1 5079 5150 -1021 2109 111 27 0 chrX 10625115 10625413 -166348727 + AluSq SINE Alu 1 306 -7 1478 170 31 71 chrX 10625413 10625893 -166348247 + L1M3 LINE L1 5150 5607 -564 1822 164 18 0 chrX 10625894 10626168 -166347972 + AluSx SINE Alu 2 280 -32 1620 31 0 3 chrX 10626169 10626459 -166347681 + (GAGAA)n Simple_repeat Simple_repeat 1 289 0 1157 264 64 35 chrX 10627245 10627680 -166346460 + LTR16A LTR ERVL 1 448 -2 1837 209 12 10 chrX 10628115 10628527 -166345613 + L1 LINE L1 4356 4768 -1378 514 188 0 0 chrX 10628530 10628626 -166345514 + AluJ/FRAM SINE Alu 217 312 0 1921 111 37 37 chrX 10628649 10628946 -166345194 + AluSq SINE Alu 1 297 -16 2090 148 0 3 chrX 10628947 10629251 -166344889 + AluJb SINE Alu 1 303 -9 1633 213 10 33 chrX 10629254 10629643 -166344497 + L1ME1 LINE L1 4760 5139 -1007 3926 194 30 51 chrX 10629658 10630010 -166344130 + L1ME1 LINE L1 5254 5612 -554 2326 99 0 10 chrX 10630010 10630312 -166343828 + AluSx SINE Alu 1 299 -13 3926 194 30 51 chrX 10630312 10630886 -166343254 + L1ME1 LINE L1 5612 6161 -5 351 195 0 46 chrX 10631032 10631119 -166343021 - AluJ/FLAM SINE Alu -217 85 3 2372 118 8 21 chrX 10631306 10631680 -166342460 + THE1C LTR MaLR 7 375 0 1881 268 41 13 chrX 10631818 10631907 -166342233 + L1M4b LINE L1 16 101 -6758 1378 123 50 0 chrX 10631907 10632126 -166342014 - MER30 DNA MER1_type 0 230 1 1881 268 41 13 chrX 10632126 10632503 -166341637 + L1M4b LINE L1 101 495 -6364 1850 84 0 0 chrX 10632503 10632729 -166341411 + AluSg SINE Alu 1 226 -84 870 132 7 14 chrX 10632732 10632876 -166341264 + AluSg/x SINE Alu 170 312 0 2970 207 45 69 chrX 10632878 10633632 -166340508 + L1M4b LINE L1 486 1221 -5638 * 4169 23 8 0 chrX 10633630 10634113 -166340027 - L1P LINE L1 -1491 4655 4169 7594 34 0 0 chrX 10634113 10635578 -166338562 + L1PA4 LINE L1 4689 6153 -2 2454 249 43 47 chrX 10635580 10636285 -166337855 + L1M4b LINE L1 1199 1905 -5054 2275 96 10 0 chrX 10636285 10636577 -166337563 - AluSp SINE Alu -18 295 1 2454 249 43 47 chrX 10636577 10636981 -166337159 + L1M4b LINE L1 1905 2303 -4656 2290 77 0 7 chrX 10636981 10637311 -166336829 + AluY SINE Alu 1 328 0 2454 249 43 47 chrX 10637311 10637433 -166336707 + L1M4b LINE L1 2303 2424 -4535 319 241 0 0 chrX 10637578 10637661 -166336479 + L1M4b LINE L1 2476 2558 -4580 839 304 63 16 chrX 10638901 10639279 -166334861 - L1ME4a LINE L1 -278 5843 5448 399 315 8 0 chrX 10639342 10639469 -166334671 + MIR SINE MIR 40 167 -95 1909 201 37 22 chrX 10639590 10639967 -166334173 + Charlie4a DNA MER1_type 38 425 -1536 3433 101 61 22 chrX 10639967 10640474 -166333666 - MER1A DNA MER1_type 0 527 1 1909 201 37 22 chrX 10640474 10640558 -166333582 + Charlie4a DNA MER1_type 425 506 -2 273 298 7 57 chrX 10641864 10642005 -166332135 - MIR3 SINE MIR -2 206 73 207 0 0 0 chrX 10642364 10642387 -166331753 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2145 119 13 19 chrX 10642462 10642774 -166331366 + AluSx SINE Alu 1 310 -2 186 42 62 62 chrX 10642777 10642825 -166331315 + A-rich Low_complexity Low_complexity 1 48 0 * 665 208 6 0 chrX 10642821 10642989 -166331151 + GA-rich Low_complexity Low_complexity 2 170 0 423 0 0 0 chrX 10644159 10644206 -166329934 + (TG)n Simple_repeat Simple_repeat 2 48 0 1947 138 7 0 chrX 10644206 10644488 -166329652 - AluSx SINE Alu -25 287 1 2310 100 0 31 chrX 10644804 10644918 -166329222 + AluSx SINE Alu 3 119 -193 2499 90 0 0 chrX 10644918 10645229 -166328911 + AluY SINE Alu 1 311 0 2310 100 0 31 chrX 10645229 10645434 -166328706 + AluSx SINE Alu 119 312 0 2342 99 3 3 chrX 10646316 10646628 -166327512 - AluSq SINE Alu -1 312 1 889 217 26 22 chrX 10646811 10647041 -166327099 - MIR SINE MIR -28 234 4 184 186 0 47 chrX 10647148 10647191 -166326949 - L2 LINE L2 -541 2773 2733 2056 128 0 16 chrX 10647472 10647799 -166326341 - AluSx SINE Alu 0 312 1 673 132 166 102 chrX 10648229 10648434 -166325706 + MER20 DNA MER1_type 1 218 -1 2251 110 0 13 chrX 10648556 10648866 -166325274 - AluSx SINE Alu -6 306 1 197 326 58 12 chrX 10649346 10649432 -166324708 - L2 LINE L2 -20 3252 3163 1852 239 54 6 chrX 10649560 10650057 -166324083 - L1ME2 LINE L1 -1 6163 5643 233 256 0 39 chrX 10650304 10650382 -166323758 + MIR SINE MIR 183 257 -5 2047 132 0 49 chrX 10650536 10650863 -166323277 + AluJb SINE Alu 1 311 -1 1342 150 41 0 chrX 10651219 10651439 -166322701 + MER46A DNA MER2_type 5 233 -3 2289 87 17 13 chrX 10652677 10652975 -166321165 - AluSx SINE Alu -13 299 1 1185 185 39 15 chrX 10652989 10653248 -166320892 - L1MB2 LINE L1 -8 6163 5899 1323 97 101 10 chrX 10653248 10653447 -166320693 + MER30 DNA MER1_type 10 230 0 1960 114 46 3 chrX 10653447 10653753 -166320387 - L1MB2 LINE L1 -260 5911 5593 634 124 9 9 chrX 10653756 10653869 -166320271 + (TTCTC)n Simple_repeat Simple_repeat 3 115 0 1960 109 41 0 chrX 10654532 10654799 -166319341 - AluSx SINE Alu -34 278 1 373 194 43 50 chrX 10654801 10654940 -166319200 - L1MC5 LINE L1 -367 7594 7457 198 0 0 0 chrX 10655118 10655140 -166319000 + (A)n Simple_repeat Simple_repeat 1 22 0 1896 127 18 11 chrX 10655141 10655417 -166318723 - AluSx SINE Alu -34 278 1 207 100 0 0 chrX 10655960 10655990 -166318150 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 855 276 162 15 chrX 10655994 10656526 -166317614 - L2 LINE L2 -16 3297 2630 1235 220 106 48 chrX 10656526 10657045 -166317095 - MLT1H LTR MaLR 0 549 1 855 276 162 15 chrX 10657045 10657185 -166316955 - L2 LINE L2 -683 2630 2512 558 0 0 0 chrX 10657257 10657319 -166316821 + (TC)n Simple_repeat Simple_repeat 2 63 0 2348 100 0 7 chrX 10658094 10658395 -166315745 - AluSx SINE Alu -13 299 1 288 345 26 0 chrX 10658872 10658985 -166315155 - MIR3 SINE MIR -36 172 57 1075 175 3 126 chrX 10659875 10660160 -166313980 + AluJo SINE Alu 5 254 -58 2217 110 3 10 chrX 10660338 10660648 -166313492 - AluSx SINE Alu -4 308 1 2227 98 7 10 chrX 10661043 10661339 -166312801 - AluSx SINE Alu -14 298 4 847 164 71 38 chrX 10662173 10662229 -166311911 - MER5A DNA MER1_type 0 189 136 1843 166 0 19 chrX 10662229 10662543 -166311597 + AluJb SINE Alu 1 308 -4 847 164 71 38 chrX 10662543 10662669 -166311471 - MER5A DNA MER1_type -53 136 1 356 111 0 0 chrX 10662788 10662842 -166311298 + L1PA6 LINE L1 6092 6145 -9 327 261 0 22 chrX 10662847 10662939 -166311201 + L1MC4 LINE L1 6614 6703 -1339 210 191 0 0 chrX 10662939 10662981 -166311159 + (TG)n Simple_repeat Simple_repeat 2 43 0 3509 166 6 2 chrX 10662990 10663540 -166310600 - MER77 LTR ERV1 -36 569 18 672 221 19 6 chrX 10663811 10663969 -166310171 + L1MD1 LINE L1 5966 6125 -117 44458 43 5 0 chrX 10663984 10670105 -166304035 - L1PA4 LINE L1 0 6155 8 697 182 0 0 chrX 10670113 10670245 -166303895 + L1MD1 LINE L1 6110 6241 -1 665 102 339 0 chrX 10670297 10670424 -166303716 - Tigger2 DNA MER2_type 0 2718 2549 * 5270 142 11 25 chrX 10670421 10670814 -166303326 - Tigger2 DNA MER2_type -1863 855 458 2232 127 0 0 chrX 10670814 10671122 -166303018 - AluSx SINE Alu -4 308 1 5270 142 11 25 chrX 10671122 10671595 -166302545 - Tigger2 DNA MER2_type -2260 458 1 1253 180 0 14 chrX 10672256 10672473 -166301667 + MER20 DNA MER1_type 2 215 -4 348 250 10 40 chrX 10672955 10673004 -166301136 + CT-rich Low_complexity Low_complexity 1 50 -395 1937 87 79 0 chrX 10673004 10673257 -166300883 - AluSx SINE Alu -6 306 34 348 250 10 40 chrX 10673257 10673414 -166300726 + CT-rich Low_complexity Low_complexity 50 445 0 691 139 83 0 chrX 10673492 10673600 -166300540 - FLAM_C SINE Alu -16 117 1 355 138 23 0 chrX 10673968 10674055 -166300085 + (TG)n Simple_repeat Simple_repeat 2 90 0 1781 164 7 17 chrX 10674134 10674427 -166299713 + AluJo SINE Alu 6 295 -17 1430 203 70 17 chrX 10675220 10675764 -166298376 + L2 LINE L2 2727 3295 -18 2039 133 3 13 chrX 10675967 10676267 -166297873 - AluSx SINE Alu -15 297 1 705 253 48 9 chrX 10676473 10676780 -166297360 - MLT1J2 LTR MaLR -2 448 38 306 244 98 49 chrX 10677810 10677933 -166296207 + MIR3 SINE MIR 31 159 -49 193 304 80 45 chrX 10678357 10678469 -166295671 - L3 LINE CR1 -33 1544 1429 198 0 0 0 chrX 10678496 10678518 -166295622 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2064 112 0 0 chrX 10678521 10678790 -166295350 - AluSx SINE Alu -38 274 6 196 293 57 57 chrX 10679307 10679430 -166294710 + L3 LINE CR1 1429 1551 -26 4245 147 53 36 chrX 10680118 10680164 -166293976 - L1MB8 LINE L1 -22 6156 6112 2291 106 3 0 chrX 10680164 10680457 -166293683 + AluSp SINE Alu 1 294 -19 4245 147 53 36 chrX 10680457 10681233 -166292907 - L1MB8 LINE L1 -66 6112 5320 2918 201 42 23 chrX 10681246 10681942 -166292198 - L1MC4 LINE L1 0 8042 7334 * 5538 203 31 33 chrX 10681938 10683319 -166290821 - L1MB8 LINE L1 -807 5339 3961 1898 148 13 31 chrX 10683398 10683716 -166290424 + AluJb SINE Alu 1 312 0 282 100 0 0 chrX 10683780 10683820 -166290320 - MADE1 DNA Mariner -1 79 40 2341 237 82 25 chrX 10683919 10684199 -166289941 - L1ME3 LINE L1 0 6162 5899 2049 133 0 3 chrX 10684199 10684499 -166289641 + AluJo SINE Alu 1 299 -13 2341 237 82 25 chrX 10684499 10684853 -166289287 - L1ME3 LINE L1 -263 5899 5486 1736 144 33 52 chrX 10684853 10685159 -166288981 - AluJb SINE Alu -12 300 1 2341 237 82 25 chrX 10685159 10685195 -166288945 - L1ME3 LINE L1 -676 5486 5453 616 289 134 67 chrX 10685405 10685673 -166288467 + L3 LINE CR1 850 1099 -478 1953 135 24 14 chrX 10685673 10685970 -166288170 + AluJb SINE Alu 1 300 -12 616 289 134 67 chrX 10685970 10686356 -166287784 + L3 LINE CR1 1099 1548 -29 1149 164 84 0 chrX 10687502 10687740 -166286400 + MLT2B2 LTR ERVL 254 511 -4 198 0 0 0 chrX 10687790 10687812 -166286328 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 408 298 118 52 chrX 10687816 10688179 -166285961 + L1ME2 LINE L1 5612 5998 -123 2167 109 3 42 chrX 10688284 10688597 -166285543 - AluSx SINE Alu -11 301 1 815 160 47 99 chrX 10688688 10688901 -166285239 - MER105 DNA DNA -1 203 2 1478 116 48 0 chrX 10689292 10689499 -166284641 - AluJb SINE Alu -9 303 87 356 171 248 0 chrX 10689889 10689931 -166284209 + MER5B DNA MER1_type 1 31 -147 2354 93 10 3 chrX 10689931 10690242 -166283898 + AluSq SINE Alu 1 313 0 356 171 248 0 chrX 10690242 10690304 -166283836 + MER5B DNA MER1_type 31 131 -47 2351 235 160 30 chrX 10690337 10690736 -166283404 + L2 LINE L2 1912 2258 -1055 1718 171 0 30 chrX 10690736 10691035 -166283105 - AluSx SINE Alu -22 290 1 2351 235 160 30 chrX 10691035 10691866 -166282274 + L2 LINE L2 2258 3311 -2 1593 141 32 35 chrX 10692167 10692450 -166281690 - AluJb SINE Alu -18 294 13 181 289 12 72 chrX 10692523 10692606 -166281534 + MIR SINE MIR 58 135 -127 1812 123 4 0 chrX 10692971 10693214 -166280926 + AluSq SINE Alu 3 246 -67 1294 166 14 0 chrX 10693215 10693426 -166280714 + MSTB LTR MaLR 213 426 0 455 148 35 112 chrX 10693433 10693533 -166280607 + L1ME2 LINE L1 6041 6147 -187 1664 162 17 24 chrX 10693533 10693823 -166280317 - AluJo SINE Alu -24 288 1 455 148 35 112 chrX 10693823 10693865 -166280275 + L1ME2 LINE L1 6147 6332 -2 1501 231 95 31 chrX 10693920 10694406 -166279734 + LTR33A LTR ERVL 7 523 0 649 259 6 0 chrX 10694870 10695028 -166279112 + MLT1J2 LTR MaLR 24 182 -268 1467 139 48 7 chrX 10695038 10695311 -166278829 + L1MB8 LINE L1 5726 6009 -169 818 117 24 169 chrX 10695334 10695532 -166278608 + L1MB8 LINE L1 5961 6118 -60 1533 155 75 22 chrX 10695532 10695810 -166278330 - AluJo SINE Alu -19 293 1 818 117 24 169 chrX 10695810 10695859 -166278281 + L1MB8 LINE L1 6118 6172 -6 655 247 154 28 chrX 10695873 10696120 -166278020 + MLT1J2 LTR MaLR 173 450 0 1244 128 0 0 chrX 10696574 10696738 -166277402 - AluSg/x SINE Alu -13 299 136 380 20 20 0 chrX 10696739 10696788 -166277352 + (TTA)n Simple_repeat Simple_repeat 2 51 0 2189 105 0 3 chrX 10696788 10697073 -166277067 - AluSx SINE Alu -28 284 1 * 2450 103 0 0 chrX 10697072 10697382 -166276758 - AluSx SINE Alu -2 310 1 350 328 82 31 chrX 10697383 10697837 -166276303 - L2 LINE L2 -7 3306 2833 981 261 18 70 chrX 10698989 10699318 -166274822 + LTR16C LTR ERVL 179 490 -1 2290 113 3 0 chrX 10699358 10699659 -166274481 + AluSx SINE Alu 1 302 -10 2078 118 0 14 chrX 10699710 10700036 -166274104 + AluSq SINE Alu 1 322 0 49 32 0 0 chrX 10700902 10700965 -166273175 + AT_rich Low_complexity Low_complexity 1 63 0 1515 153 95 11 chrX 10700981 10701243 -166272897 - AluJo SINE Alu -28 284 1 331 307 10 10 chrX 10701284 10701385 -166272755 - MIR SINE MIR -91 117 17 2821 13 0 3 chrX 10701651 10701959 -166272181 + AluYa5 SINE Alu 1 307 -4 640 215 126 37 chrX 10703740 10703954 -166270186 + Charlie1b DNA MER1_type 10 242 -281 366 250 12 12 chrX 10704106 10704190 -166269950 + Tigger2 DNA MER2_type 2632 2715 -3 843 164 55 41 chrX 10704246 10704466 -166269674 - L1MB4 LINE L1 -210 5970 5748 1294 197 91 18 chrX 10704467 10704807 -166269333 + MLT1A1 LTR MaLR 1 365 0 234 299 72 0 chrX 10705474 10705571 -166268569 - MIR SINE MIR -21 241 138 216 182 0 0 chrX 10706903 10706947 -166267193 + (CAA)n Simple_repeat Simple_repeat 2 45 0 2271 138 24 29 chrX 10707103 10707476 -166266664 - L1MB5 LINE L1 -216 5958 5586 1174 205 107 60 chrX 10707476 10707823 -166266317 + MLT1A1 LTR MaLR 3 365 0 2271 138 24 29 chrX 10707823 10707868 -166266272 - L1MB5 LINE L1 -588 5586 5542 456 292 152 14 chrX 10708350 10708627 -166265513 - L2 LINE L2 -1006 2308 1994 1482 165 96 38 chrX 10709734 10710079 -166264061 - MLT1A1 LTR MaLR 0 365 1 371 177 62 21 chrX 10710559 10710655 -166263485 + L1ME1 LINE L1 5792 5891 -275 1546 174 14 11 chrX 10710659 10710935 -166263205 + AluJb SINE Alu 7 283 -29 2336 90 17 3 chrX 10711399 10711700 -166262440 - AluSc SINE Alu -2 307 3 1047 109 0 34 chrX 10711701 10711848 -166262292 - AluSq/x SINE Alu -171 142 1 801 111 24 0 chrX 10714437 10714563 -166259577 - AluSg/x SINE Alu -15 294 166 1622 114 5 0 chrX 10714664 10714884 -166259256 - AluSx SINE Alu -90 222 2 3714 94 76 26 chrX 10715020 10715382 -166258758 - MER39B LTR ERV1 -4 649 307 2216 98 0 23 chrX 10715382 10715688 -166258452 - AluSx SINE Alu -13 299 1 2211 98 27 0 chrX 10715695 10715991 -166258149 - AluSp SINE Alu -9 304 1 3714 94 76 26 chrX 10715991 10716238 -166257902 - MER39B LTR ERV1 -351 302 1 316 259 65 41 chrX 10716406 10716576 -166257564 + MIR SINE MIR 81 254 -8 1813 98 12 8 chrX 10716655 10716909 -166257231 + AluSx SINE Alu 1 255 -57 2229 96 16 19 chrX 10717362 10717675 -166256465 + AluSx SINE Alu 1 312 0 2135 252 65 13 chrX 10719695 10720310 -166253830 + L1MC4a LINE L1 5279 5925 -1883 265 191 62 25 chrX 10720430 10720592 -166253548 + (TA)n Simple_repeat Simple_repeat 1 168 0 1238 122 0 0 chrX 10720644 10720808 -166253332 - AluSg/x SINE Alu -16 296 133 1261 166 12 95 chrX 10721073 10721272 -166252868 - AluJb SINE Alu 0 312 151 1866 94 97 4 chrX 10721272 10721539 -166252601 - AluSg SINE Alu -16 294 3 1261 166 12 95 chrX 10721539 10721677 -166252463 - AluJb SINE Alu -161 151 3 242 210 32 0 chrX 10721682 10721744 -166252396 - AluJ/monomer SINE Alu 0 302 239 473 181 9 67 chrX 10721951 10722056 -166252084 - Tigger7 DNA MER2_type -1 2490 2392 * 1450 183 28 0 chrX 10722053 10722305 -166251835 - Tigger7 DNA MER2_type -2220 267 9 474 157 36 121 chrX 10722431 10722474 -166251666 - MER5A DNA MER1_type -3 186 141 1919 159 7 0 chrX 10722474 10722769 -166251371 - AluJb SINE Alu -15 297 1 474 157 36 121 chrX 10722769 10722865 -166251275 - MER5A DNA MER1_type -48 141 59 18495 38 2 4 chrX 10723107 10725356 -166248784 + L1P LINE L1 2679 4924 -1222 198 333 15 0 chrX 10725509 10725575 -166248565 + L2 LINE L2 2750 2816 -498 330 259 146 62 chrX 10725648 10725969 -166248171 + L2 LINE L2 2948 3295 -18 2578 60 0 0 chrX 10726135 10726433 -166247707 - AluSc SINE Alu -11 298 1 3048 157 68 28 chrX 10726445 10726567 -166247573 - L1MB8 LINE L1 0 6178 6062 2406 113 16 34 chrX 10726567 10726949 -166247191 + THE1C LTR MaLR 1 375 0 3048 157 68 28 chrX 10726949 10727431 -166246709 - L1MB8 LINE L1 -116 6062 5550 4253 151 11 27 chrX 10727590 10727663 -166246477 - L1MA3 LINE L1 -300 6005 5932 189 0 0 0 chrX 10727663 10727684 -166246456 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4253 151 11 27 chrX 10727684 10728467 -166245673 - L1MA3 LINE L1 -373 5932 5161 441 213 287 22 chrX 10728644 10728874 -166245266 - LTR50 LTR ERVL 0 795 505 414 183 204 29 chrX 10728972 10729109 -166245031 - LTR50 LTR ERVL -599 196 36 616 205 6 66 chrX 10729413 10729579 -166244561 - MER3 DNA MER1_type -41 168 13 201 74 0 0 chrX 10729695 10729722 -166244418 + (T)n Simple_repeat Simple_repeat 1 27 0 4712 191 48 33 chrX 10729828 10729945 -166244195 - L1MB8 LINE L1 -646 5532 5418 2213 107 11 0 chrX 10729945 10730267 -166243873 - AluSx SINE Alu 0 325 1 4712 191 48 33 chrX 10730267 10731388 -166242752 - L1MB8 LINE L1 -760 5418 4285 2275 131 0 0 chrX 10731430 10731742 -166242398 - AluSx SINE Alu 0 312 1 442 285 28 34 chrX 10731845 10732024 -166242116 - HAL1b LINE L1 -812 536 359 1880 204 48 12 chrX 10732403 10732824 -166241316 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chrX 10732875 10732898 -166241242 + AT_rich Low_complexity Low_complexity 1 23 0 1971 243 63 30 chrX 10733979 10734538 -166239602 - MLT1K LTR MaLR -2 586 10 609 251 97 8 chrX 10735419 10735666 -166238474 - L1ME LINE L1 -608 5556 5288 261 0 0 0 chrX 10735714 10735743 -166238397 + (CA)n Simple_repeat Simple_repeat 2 30 0 273 280 98 81 chrX 10735956 10736427 -166237713 - L1MB8 LINE L1 -1944 4202 3724 22 35 0 0 chrX 10736500 10736529 -166237611 + AT_rich Low_complexity Low_complexity 1 29 0 14037 72 4 1 chrX 10736598 10738388 -166235752 + L1P LINE L1 7 1801 -4345 1854 88 92 0 chrX 10738501 10738773 -166235367 + L1PA13 LINE L1 5867 6163 0 2479 68 0 40 chrX 10739017 10739341 -166234799 - AluY SINE Alu 0 311 1 2222 112 0 3 chrX 10739343 10739646 -166234494 - AluSx SINE Alu -10 302 1 1607 171 4 11 chrX 10739950 10740231 -166233909 + AluJo SINE Alu 24 302 -10 869 116 0 0 chrX 10740734 10740846 -166233294 + FLAM_C SINE Alu 14 125 -18 242 306 82 41 chrX 10740906 10741053 -166233087 + L1MC4 LINE L1 6460 6612 -1430 273 57 0 0 chrX 10741068 10741103 -166233037 + (CA)n Simple_repeat Simple_repeat 2 36 0 1810 175 3 0 chrX 10741107 10741398 -166232742 + AluJb SINE Alu 1 292 -20 21 0 0 0 chrX 10741850 10741871 -166232269 + AT_rich Low_complexity Low_complexity 1 21 0 895 247 94 65 chrX 10741891 10742381 -166231759 + L1ME4a LINE L1 5513 6016 -105 1239 126 143 116 chrX 10743243 10743339 -166230801 + AluJb SINE Alu 2 94 -208 2208 117 0 0 chrX 10743339 10743629 -166230511 + AluSx SINE Alu 1 290 -22 1239 126 143 116 chrX 10743629 10743825 -166230315 + AluJb SINE Alu 94 302 0 349 174 312 0 chrX 10744308 10744417 -166229723 - MER5A DNA MER1_type 0 189 47 1631 260 78 22 chrX 10744458 10744480 -166229660 - MLT1L LTR MaLR -50 565 546 2534 94 30 22 chrX 10744480 10744841 -166229299 - THE1B LTR MaLR 0 364 1 1631 260 78 22 chrX 10744841 10745353 -166228787 - MLT1L LTR MaLR -69 546 1 1859 163 12 12 chrX 10746316 10746647 -166227493 + MER67C LTR ERV1 375 705 -5 772 136 0 0 chrX 10746897 10747015 -166227125 + FLAM_A SINE Alu 20 137 -5 2169 110 17 0 chrX 10747092 10747384 -166226756 - AluSx SINE Alu -15 297 1 822 288 83 6 chrX 10747719 10748056 -166226084 - LTR16B LTR ERVL 0 464 102 1870 157 23 3 chrX 10748527 10748713 -166225427 - AluJb SINE Alu 0 312 116 216 0 0 0 chrX 10748713 10748737 -166225403 + (ATTG)n Simple_repeat Simple_repeat 1 24 0 1870 157 23 3 chrX 10748737 10748856 -166225284 - AluJb SINE Alu -196 116 1 2247 112 0 3 chrX 10748866 10749169 -166224971 - AluSx SINE Alu -10 302 1 454 266 129 17 chrX 10749318 10749551 -166224589 + L1ME4a LINE L1 5591 5849 -272 2443 78 0 10 chrX 10749594 10749902 -166224238 + AluSx SINE Alu 6 310 -2 1030 195 19 28 chrX 10750100 10750315 -166223825 - MER20 DNA MER1_type -4 215 3 563 272 74 28 chrX 10751069 10751352 -166222788 - L2 LINE L2 -371 2943 2648 660 239 64 93 chrX 10752460 10752821 -166221319 - L1MC/D LINE L1 -743 5403 5215 1829 165 3 22 chrX 10752821 10753137 -166221003 - AluJo SINE Alu -2 310 1 660 239 64 93 chrX 10753137 10753467 -166220673 - L1MC/D LINE L1 -931 5215 4877 1056 165 48 96 chrX 10753490 10753641 -166220499 + MER8 DNA MER2_type 3 139 -100 2422 105 0 0 chrX 10753641 10753946 -166220194 - AluSx SINE Alu -7 305 1 1056 165 48 96 chrX 10753946 10754043 -166220097 + MER8 DNA MER2_type 139 239 0 21 0 0 0 chrX 10754043 10754064 -166220076 + AT_rich Low_complexity Low_complexity 1 21 0 574 235 133 20 chrX 10754064 10754260 -166219880 - MIR SINE MIR -5 257 40 287 235 74 12 chrX 10754275 10754356 -166219784 + L1ME LINE L1 5605 5690 -480 334 286 41 41 chrX 10754368 10754588 -166219552 - L1MC/D LINE L1 -1310 4836 4617 1889 159 0 3 chrX 10754597 10754887 -166219253 + AluJo SINE Alu 2 290 -22 467 299 42 0 chrX 10754949 10755116 -166219024 + MIR SINE MIR 12 185 -77 380 224 47 9 chrX 10755513 10755620 -166218520 - L1ME3 LINE L1 -218 5944 5834 403 235 0 0 chrX 10756737 10756818 -166217322 + MIR SINE MIR 3 83 -179 829 246 27 48 chrX 10756991 10757321 -166216819 - L1MC4 LINE L1 -3 8039 7717 523 194 29 7 chrX 10757317 10757456 -166216684 + L1 LINE L1 3064 3205 -2941 * 1388 101 0 0 chrX 10757456 10757635 -166216505 + AluSg/x SINE Alu 133 311 -1 356 139 89 0 chrX 10757637 10757716 -166216424 + L1 LINE L1 3196 3281 -2865 236 222 120 9 chrX 10757917 10758025 -166216115 - L1 LINE L1 -1959 4187 4068 889 289 56 34 chrX 10758026 10758382 -166215758 + MLT1L LTR MaLR 1 364 -251 2615 143 59 5 chrX 10758382 10758821 -166215319 + ERVL-D LTR ERVL 5295 5757 -7 1450 187 142 14 chrX 10758821 10759161 -166214979 + MLT2D LTR ERVL 1 336 -78 1829 147 88 0 chrX 10759243 10759563 -166214577 + MER7A DNA MER2_type 1 346 0 635 229 39 0 chrX 10760238 10760391 -166213749 + MER5B DNA MER1_type 20 178 0 2110 132 6 10 chrX 10760515 10760826 -166213314 - AluSx SINE Alu -2 310 1 944 224 9 31 chrX 10760846 10761069 -166213071 + MER58A DNA MER1_type 3 220 -4 387 169 0 0 chrX 10761311 10761382 -166212758 + (TG)n Simple_repeat Simple_repeat 2 72 0 1023 150 0 42 chrX 10761383 10761550 -166212590 - AluJb SINE Alu -19 293 134 1716 195 0 7 chrX 10761550 10761852 -166212288 - AluJo SINE Alu -12 300 1 451 198 10 20 chrX 10762303 10762404 -166211736 - LTR33 LTR ERVL -420 101 2 309 131 0 0 chrX 10762459 10762520 -166211620 + (TA)n Simple_repeat Simple_repeat 2 62 0 822 120 8 0 chrX 10762521 10762638 -166211502 - FLAM_C SINE Alu -15 118 1 294 297 21 73 chrX 10762821 10763013 -166211127 - L2 LINE L2 -267 3046 2865 182 277 53 21 chrX 10763093 10763187 -166210953 + MIR3 SINE MIR 91 187 -21 663 283 46 33 chrX 10763291 10763595 -166210545 + LTR16C LTR ERVL 2 309 -182 21 0 0 0 chrX 10763758 10763779 -166210361 + AT_rich Low_complexity Low_complexity 1 21 0 2411 77 0 3 chrX 10763782 10764081 -166210059 - AluSx SINE Alu -14 298 1 28 48 0 0 chrX 10764435 10764477 -166209663 + AT_rich Low_complexity Low_complexity 1 42 0 2262 97 7 10 chrX 10765234 10765542 -166208598 + AluSx SINE Alu 1 307 -5 259 191 26 26 chrX 10766441 10766556 -166207584 + GA-rich Low_complexity Low_complexity 4 118 0 399 227 50 28 chrX 10766557 10766756 -166207384 + G-rich Low_complexity Low_complexity 1 203 0 757 100 0 18 chrX 10767071 10767181 -166206959 - AluSg/x SINE Alu -23 289 182 407 101 22 45 chrX 10767203 10767292 -166206848 - LTR3 LTR ERVK -16 416 330 377 130 0 0 chrX 10767280 10767334 -166206806 - Alu SINE Alu -248 54 1 * 858 252 5 23 chrX 10767437 10767655 -166206485 - MIR SINE MIR -21 241 28 842 136 0 0 chrX 10767841 10767959 -166206181 + FLAM_C SINE Alu 1 118 -25 1046 149 120 130 chrX 10768271 10768587 -166205553 + MLT1A1 LTR MaLR 1 313 -52 2007 159 0 0 chrX 10768613 10768914 -166205226 - AluJb SINE Alu -11 301 1 334 254 26 0 chrX 10768915 10769029 -166205111 + L1ME3 LINE L1 6040 6156 -6 2402 159 82 0 chrX 10769768 10770207 -166203933 - L1M4 LINE L1 -384 5863 5389 2918 201 42 23 chrX 10770220 10770916 -166203224 - L1MC4 LINE L1 0 8042 7334 * 5079 212 30 37 chrX 10770912 10772301 -166201839 - L1M4 LINE L1 -807 5408 4030 1688 139 20 41 chrX 10772380 10772674 -166201466 + AluJb SINE Alu 1 288 -24 1039 226 20 44 chrX 10772678 10773122 -166201018 + L2 LINE L2 2720 3149 -164 476 283 50 96 chrX 10773218 10773561 -166200579 - MLT1J2 LTR MaLR -107 343 17 505 267 8 8 chrX 10773585 10773716 -166200424 + L2 LINE L2 3182 3312 -1 10987 150 47 8 chrX 10774319 10777131 -166197009 + L1MA9 LINE L1 3238 6178 -134 231 36 0 0 chrX 10777131 10777159 -166196981 + (CA)n Simple_repeat Simple_repeat 1 28 0 10987 150 47 8 chrX 10777159 10777300 -166196840 + L1MA9 LINE L1 6178 6312 0 1030 295 91 22 chrX 10777506 10777835 -166196305 + L2 LINE L2 2651 2956 -357 1856 134 42 0 chrX 10777835 10778125 -166196015 - AluJb SINE Alu 0 311 11 1030 295 91 22 chrX 10778125 10778404 -166195736 + L2 LINE L2 2956 3312 -1 2077 142 0 3 chrX 10779045 10779354 -166194786 + AluJo SINE Alu 3 310 -2 2761 82 5 14 chrX 10779880 10780247 -166193893 + THE1B LTR MaLR 1 364 0 410 217 43 0 chrX 10780342 10780434 -166193706 - MIR SINE MIR -70 192 97 227 208 167 0 chrX 10780981 10781053 -166193087 + MIR SINE MIR 77 160 -102 2282 181 56 38 chrX 10781381 10781649 -166192491 - L1M4 LINE L1 -3145 3070 2808 2860 164 34 27 chrX 10781649 10781666 -166192474 + MER74A LTR ERVL 1 16 -542 1822 136 3 34 chrX 10781666 10781999 -166192141 - AluJb SINE Alu 0 324 1 2860 164 34 27 chrX 10781999 10782534 -166191606 + MER74A LTR ERVL 16 558 0 2282 181 56 38 chrX 10782534 10782838 -166191302 - L1M4 LINE L1 -3407 2808 2488 685 272 43 39 chrX 10782941 10782978 -166191162 - L1M4 LINE L1 -5882 514 479 2504 78 3 0 chrX 10782978 10783286 -166190854 - AluSx SINE Alu -3 309 1 685 272 43 39 chrX 10783286 10783480 -166190660 - L1M4 LINE L1 -5917 479 282 808 218 26 0 chrX 10783487 10783643 -166190497 - MER45A DNA AcHobo -1 177 18 1091 157 31 63 chrX 10783643 10783898 -166190242 - THE1C LTR MaLR 0 375 129 328 260 130 96 chrX 10784353 10784737 -166189403 - MLT1J LTR MaLR -3 508 112 2306 92 3 19 chrX 10785701 10786015 -166188125 + AluSx SINE Alu 1 309 -3 1913 113 77 47 chrX 10786254 10786618 -166187522 + THE1C LTR MaLR 1 375 0 572 284 6 18 chrX 10787156 10787325 -166186815 + MIR3 SINE MIR 37 203 -5 1645 129 0 0 chrX 10787830 10788055 -166186085 + AluSx SINE Alu 1 225 -87 1191 93 66 85 chrX 10789345 10789530 -166184610 + L1MB8 LINE L1 5925 6105 -73 1909 162 0 3 chrX 10789530 10789827 -166184313 + AluJo SINE Alu 1 296 -16 1191 93 66 85 chrX 10789827 10789900 -166184240 + L1MB8 LINE L1 6105 6178 0 189 0 0 0 chrX 10789969 10789990 -166184150 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 480 18 0 0 chrX 10789989 10790046 -166184094 + (CA)n Simple_repeat Simple_repeat 1 57 0 2366 107 0 0 chrX 10790809 10791109 -166183031 + AluSx SINE Alu 1 300 -12 361 292 83 7 chrX 10791626 10791770 -166182370 - MIR SINE MIR -21 241 87 2136 189 57 29 chrX 10792003 10792494 -166181646 + MLT1D LTR MaLR 1 505 0 1024 188 77 14 chrX 10792519 10792727 -166181413 + MER58A DNA MER1_type 1 221 -3 25 0 0 0 chrX 10793033 10793058 -166181082 + AT_rich Low_complexity Low_complexity 1 25 0 232 238 0 63 chrX 10793219 10793282 -166180858 + MLT1L LTR MaLR 142 200 -415 321 266 35 9 chrX 10793376 10793489 -166180651 + MLT1L LTR MaLR 496 611 -4 251 295 86 43 chrX 10793490 10793700 -166180440 + L2 LINE L2 2065 2283 -1031 418 354 0 19 chrX 10793719 10793880 -166180260 - MER5B DNA MER1_type -17 161 4 768 129 60 164 chrX 10794177 10794409 -166179731 + MER3 DNA MER1_type 2 209 0 537 238 52 87 chrX 10794527 10794779 -166179361 + MER112 DNA MER1_type 18 260 0 277 346 87 22 chrX 10795914 10796281 -166177859 - L2 LINE L2 -54 3218 2828 1223 177 63 41 chrX 10796889 10797160 -166176980 - MER67C LTR ERV1 -433 277 1 2162 103 80 9 chrX 10797498 10797848 -166176292 + THE1C LTR MaLR 1 375 0 1815 108 50 0 chrX 10798623 10798902 -166175238 - AluSx SINE Alu -19 293 1 838 201 6 0 chrX 10799098 10799257 -166174883 + MLT1C LTR MaLR 1 160 -230 221 171 0 0 chrX 10799261 10799302 -166174838 + T-rich Low_complexity Low_complexity 1 41 0 755 73 0 0 chrX 10799304 10799400 -166174740 - HY3 scRNA scRNA -5 96 1 1727 151 7 0 chrX 10799429 10799714 -166174426 + AluJo SINE Alu 1 287 -25 1048 227 51 16 chrX 10799772 10800028 -166174112 + MLT1C LTR MaLR 203 467 0 906 239 159 49 chrX 10800954 10801401 -166172739 - MLT1H LTR MaLR -4 545 50 265 310 103 0 chrX 10801844 10801960 -166172180 + L2 LINE L2 2226 2353 -961 356 290 123 43 chrX 10802153 10802315 -166171825 - L3 LINE CR1 -48 1529 1355 216 0 0 0 chrX 10802324 10802348 -166171792 + (CA)n Simple_repeat Simple_repeat 1 24 0 660 254 105 10 chrX 10802418 10802627 -166171513 + MLT1I LTR MaLR 16 244 -165 533 343 31 42 chrX 10802750 10803039 -166171101 - L3 LINE CR1 -374 1203 918 258 179 30 30 chrX 10803781 10803848 -166170292 + (CGGGG)n Simple_repeat Simple_repeat 2 68 0 360 330 2 0 chrX 10804147 10804274 -166169866 + MIR SINE MIR 2 130 -78 443 203 44 95 chrX 10804323 10804481 -166169659 + MIR SINE MIR 110 259 -3 30607 30 3 0 chrX 10804744 10809136 -166165004 + L1PA4 LINE L1 1740 6142 -13 1390 134 26 37 chrX 10809259 10809528 -166164612 - AluJo SINE Alu -22 290 25 25 0 0 0 chrX 10809893 10809918 -166164222 + AT_rich Low_complexity Low_complexity 1 25 0 316 122 0 0 chrX 10809918 10809959 -166164181 - AluJo SINE Alu -45 257 217 840 152 18 43 chrX 10809959 10810123 -166164017 - AluJo SINE Alu -152 160 1 2240 95 0 3 chrX 10811590 10811894 -166162246 + AluSq SINE Alu 1 303 -10 2165 102 0 7 chrX 10813938 10814243 -166159897 - AluSx SINE Alu -9 303 1 566 136 164 0 chrX 10814245 10814355 -166159785 - AluJo/FLAM SINE Alu -174 128 1 2059 107 3 32 chrX 10814368 10814678 -166159462 - AluSq SINE Alu -12 301 1 642 187 24 6 chrX 10814699 10814895 -166159245 + MER8 DNA MER2_type 3 233 -6 1300 188 58 52 chrX 10815159 10815504 -166158636 + MER7A DNA MER2_type 1 345 -1 1788 111 57 4 chrX 10815839 10816119 -166158021 - AluSc SINE Alu -14 295 1 228 296 68 0 chrX 10816856 10816944 -166157196 - MER5C DNA MER1_type -200 124 31 1940 126 3 3 chrX 10818092 10818397 -166155743 + AluJo SINE Alu 1 305 0 1158 143 27 49 chrX 10820031 10820254 -166153886 - MER20 DNA MER1_type -1 218 1 1013 235 14 0 chrX 10821061 10821278 -166152862 - LTR33 LTR ERVL -301 220 1 645 107 0 29 chrX 10822162 10822265 -166151875 + AluSc SINE Alu 202 301 -8 442 250 117 8 chrX 10822757 10822877 -166151263 - MER94 DNA DNA 0 134 2 667 247 47 0 chrX 10822881 10823051 -166151089 - MER5B DNA MER1_type 0 178 1 2043 116 6 3 chrX 10823614 10823925 -166150215 - AluSx SINE Alu 0 312 1 220 179 0 0 chrX 10823968 10824007 -166150133 + L2 LINE L2 3234 3272 0 409 247 49 121 chrX 10824083 10824354 -166149786 - MIR SINE MIR -6 256 19 1023 115 0 36 chrX 10824658 10824823 -166149317 - FRAM SINE Alu 0 40 1 200 273 109 27 chrX 10825090 10825200 -166148940 + L2 LINE L2 1913 2031 -1283 209 307 95 51 chrX 10825201 10825338 -166148802 + MIR SINE MIR 120 262 0 208 387 39 70 chrX 10825817 10826101 -166148039 + L2 LINE L2 2973 3247 -25 271 208 0 19 chrX 10826117 10826170 -166147970 + MIR3 SINE MIR 134 185 -23 360 303 110 45 chrX 10826292 10826447 -166147693 + MIR3 SINE MIR 14 178 -30 191 129 0 0 chrX 10826613 10826644 -166147496 - L3 LINE CR1 -494 1083 1053 2012 119 0 13 chrX 10826754 10827056 -166147084 - AluSx SINE Alu -14 298 1 21 0 0 0 chrX 10827286 10827307 -166146833 + AT_rich Low_complexity Low_complexity 1 21 0 928 176 6 0 chrX 10827312 10827471 -166146669 + AluJb SINE Alu 128 287 -25 2096 76 56 7 chrX 10827648 10827936 -166146204 + AluSx SINE Alu 1 302 -10 826 227 191 20 chrX 10828805 10829056 -166145084 + AluJo SINE Alu 2 295 -17 272 115 103 0 chrX 10829069 10829156 -166144984 + (TA)n Simple_repeat Simple_repeat 1 96 0 1297 112 0 0 chrX 10829162 10829341 -166144799 + AluJb SINE Alu 133 311 -1 1741 257 45 11 chrX 10830331 10830864 -166143276 - L1MB8 LINE L1 0 6178 5628 988 216 27 9 chrX 10830886 10831108 -166143032 + MIR SINE MIR 32 257 -5 186 195 0 24 chrX 10831128 10831169 -166142971 - MIR3 SINE MIR -6 202 163 691 83 31 0 chrX 10831383 10831479 -166142661 + AluSg/x SINE Alu 192 290 -19 289 112 0 44 chrX 10831893 10831947 -166142193 - MER57A LTR ERV1 -67 336 295 1852 126 0 0 chrX 10831969 10832232 -166141908 + AluJo SINE Alu 18 280 -32 2143 111 3 0 chrX 10833158 10833464 -166140676 - AluSx SINE Alu -5 307 1 302 288 0 0 chrX 10833915 10833981 -166140159 + MIR SINE MIR 90 155 -107 1755 194 106 37 chrX 10834084 10834517 -166139623 + MLT1F LTR MaLR 1 463 -79 394 231 167 0 chrX 10835288 10835396 -166138744 - MIR SINE MIR -76 186 61 1452 130 138 8 chrX 10835705 10835966 -166138174 - AluJb SINE Alu -17 295 1 904 117 0 15 chrX 10838921 10839058 -166135082 - AluJb SINE Alu -23 289 155 2073 227 129 6 chrX 10890670 10891189 -166082951 - L1ME1 LINE L1 -3 6163 5581 1663 173 0 13 chrX 10891193 10891505 -166082635 + AluJo SINE Alu 3 310 -2 372 275 49 57 chrX 10891535 10891782 -166082358 - L1ME1 LINE L1 -1801 4345 4101 1886 115 14 7 chrX 10892045 10892340 -166081800 - AluSx SINE Alu -13 299 3 2402 48 7 0 chrX 10892505 10892796 -166081344 - L1PA7 LINE L1 -28 6126 5834 270 281 62 0 chrX 10892823 10892919 -166081221 - L1ME LINE L1 -335 5835 5734 513 165 0 0 chrX 10893003 10893082 -166081058 + FLAM_A SINE Alu 43 121 -21 1032 103 0 0 chrX 10893129 10893265 -166080875 - AluSq/x SINE Alu -177 136 1 2162 113 0 13 chrX 10893275 10893585 -166080555 - AluSx SINE Alu -5 307 2 3228 127 23 8 chrX 10894618 10895147 -166078993 - MER41B LTR ERV1 0 635 99 337 323 173 13 chrX 10895522 10895747 -166078393 + MIR SINE MIR 2 260 -2 320 175 311 0 chrX 10895907 10896010 -166078130 + MIR3 SINE MIR 46 180 -28 196 271 57 14 chrX 10896093 10896163 -166077977 - MER5A DNA MER1_type -10 179 107 629 188 214 16 chrX 10896164 10896356 -166077784 + MER33 DNA MER1_type 3 232 -92 1910 144 3 0 chrX 10896441 10896732 -166077408 + AluJb SINE Alu 1 292 -20 225 0 0 0 chrX 10896732 10896757 -166077383 + (TA)n Simple_repeat Simple_repeat 1 25 0 537 186 25 0 chrX 10896785 10896903 -166077237 + MER33 DNA MER1_type 204 324 0 227 294 50 22 chrX 10897921 10897956 -166076184 + L1MDa LINE L1 1910 1943 -4597 1084 138 0 126 chrX 10897956 10898009 -166076131 - MER6B DNA MER2_type -655 210 152 2061 123 3 0 chrX 10898009 10898317 -166075823 + AluSg SINE Alu 1 309 -1 1084 138 0 126 chrX 10898317 10898502 -166075638 - MER6B DNA MER2_type -713 152 2 227 294 50 22 chrX 10898502 10898646 -166075494 + L1MDa LINE L1 1943 2094 -4446 1999 123 7 10 chrX 10899398 10899699 -166074441 + AluSx SINE Alu 1 300 -12 210 195 0 0 chrX 10899798 10899839 -166074301 - MIR SINE MIR -54 208 168 351 277 42 8 chrX 10899842 10899961 -166074179 + MER94 DNA DNA 1 123 -11 513 245 53 33 chrX 10899972 10900123 -166074017 - MIR SINE MIR -92 170 17 2014 154 3 0 chrX 10900247 10900545 -166073595 + AluJb SINE Alu 1 299 -13 1075 204 51 19 chrX 10900769 10900985 -166073155 - MER58A DNA MER1_type -1 223 1 563 303 31 31 chrX 10900998 10901252 -166072888 + L2 LINE L2 3060 3313 0 387 0 0 0 chrX 10901596 10901639 -166072501 + (TG)n Simple_repeat Simple_repeat 2 44 0 2110 138 0 0 chrX 10901913 10902210 -166071930 + AluJb SINE Alu 1 297 -15 21 36 0 0 chrX 10902753 10902781 -166071359 + AT_rich Low_complexity Low_complexity 1 28 0 463 292 8 0 chrX 10903393 10903513 -166070627 + L2 LINE L2 3145 3265 -7 2260 102 3 0 chrX 10903756 10904049 -166070091 - AluSx SINE Alu -18 294 1 321 368 19 0 chrX 10904361 10904516 -166069624 - MIR SINE MIR -4 258 101 2372 99 0 3 chrX 10904848 10905150 -166068990 - AluSx SINE Alu -11 301 1 1898 140 0 29 chrX 10905240 10905547 -166068593 - AluJo SINE Alu -14 298 1 1025 138 31 41 chrX 10906915 10907110 -166067030 - L1PB4 LINE L1 -13 6143 5951 1583 90 82 23 chrX 10907172 10907338 -166066802 - L1PB4 LINE L1 -188 5968 5780 324 0 0 0 chrX 10907338 10907374 -166066766 + (TG)n Simple_repeat Simple_repeat 2 37 0 1583 90 82 23 chrX 10907374 10907463 -166066677 - L1PB4 LINE L1 -376 5780 5698 279 288 220 0 chrX 10907955 10908132 -166066008 - L2 LINE L2 -1331 1983 1768 226 333 67 7 chrX 10909284 10909434 -166064706 + L2 LINE L2 2478 2636 -678 1189 219 5 0 chrX 10909443 10909658 -166064482 + MER58A DNA MER1_type 9 224 0 405 0 0 0 chrX 10909739 10909784 -166064356 + (TG)n Simple_repeat Simple_repeat 1 45 0 606 358 23 18 chrX 10909893 10910327 -166063813 + L2 LINE L2 2626 3064 -208 291 263 0 25 chrX 10911241 10911321 -166062819 + GA-rich Low_complexity Low_complexity 4 81 0 990 220 87 25 chrX 10911321 10911598 -166062542 - MLT1H LTR MaLR 0 549 256 1330 59 0 0 chrX 10911823 10911992 -166062148 - L1PA13 LINE L1 -2 6161 5993 1627 158 91 0 chrX 10912507 10912792 -166061348 + AluJb SINE Alu 1 311 -1 258 304 20 20 chrX 10913371 10913473 -166060667 + GA-rich Low_complexity Low_complexity 5 106 0 294 321 100 61 chrX 10913702 10913903 -166060237 + L2 LINE L2 2928 3224 -48 326 213 25 0 chrX 10913903 10913983 -166060157 - MER91A DNA MER1_type -114 82 1 294 321 100 61 chrX 10913983 10914032 -166060108 + L2 LINE L2 3224 3270 -2 21 0 0 0 chrX 10914904 10914925 -166059215 + AT_rich Low_complexity Low_complexity 1 21 0 1870 164 0 7 chrX 10915775 10916068 -166058072 + AluJo SINE Alu 1 291 -21 600 313 78 15 chrX 10916111 10916518 -166057622 - L1ME4a LINE L1 -214 5907 5473 4108 62 14 29 chrX 10916920 10917472 -166056668 - L1PA10 LINE L1 -3 6165 5622 2112 101 0 54 chrX 10918084 10918408 -166055732 + AluSx SINE Alu 1 308 0 2069 142 7 0 chrX 10919264 10919611 -166054529 - AluJo SINE Alu 0 349 1 202 207 35 35 chrX 10919795 10919853 -166054287 - MIR SINE MIR -152 110 53 302 297 17 42 chrX 10920352 10920470 -166053670 + L2 LINE L2 3199 3313 0 1130 135 0 0 chrX 10920542 10920698 -166053442 + AluJb SINE Alu 134 289 -23 597 274 42 9 chrX 10920789 10921001 -166053139 - MIR SINE MIR -42 220 2 2439 80 3 0 chrX 10921195 10921496 -166052644 + AluSq SINE Alu 1 302 -11 2509 251 96 35 chrX 10922104 10922818 -166051322 - L1MEc LINE L1 -2469 3746 3077 1753 148 16 23 chrX 10922818 10923128 -166051012 - AluJb SINE Alu 0 312 5 2509 251 96 35 chrX 10923128 10923868 -166050272 - L1MEc LINE L1 -3138 3077 2228 2180 98 3 54 chrX 10923868 10924185 -166049955 - AluSq SINE Alu -12 301 1 2509 251 96 35 chrX 10924185 10924286 -166049854 - L1MEc LINE L1 -3987 2228 2135 2127 126 3 0 chrX 10924618 10924912 -166049228 - AluSx SINE Alu -16 296 2 667 275 36 52 chrX 10924955 10925206 -166048934 + MER115 DNA AcHobo 2 248 -445 1047 209 80 115 chrX 10925591 10925952 -166048188 + MLT1H1 LTR MaLR 1 336 -219 2135 135 36 30 chrX 10925952 10926314 -166047826 - THE1B LTR MaLR 0 364 1 1047 209 80 115 chrX 10926314 10926527 -166047613 + MLT1H1 LTR MaLR 336 555 0 1221 14 14 0 chrX 10926997 10927137 -166047003 - L1PA4 LINE L1 -192 5963 5822 1502 44 0 6 chrX 10927137 10927314 -166046826 + L1PA4 LINE L1 5974 6155 0 245 253 23 0 chrX 10927327 10927414 -166046726 + L1M4 LINE L1 3685 3773 -2373 186 43 0 0 chrX 10927477 10927500 -166046640 + (A)n Simple_repeat Simple_repeat 1 23 0 190 276 0 17 chrX 10928031 10928089 -166046051 + MIR SINE MIR 184 240 -22 239 214 0 0 chrX 10928098 10928140 -166046000 + AluJ/monomer SINE Alu 2 43 -257 783 208 53 5 chrX 10928142 10928349 -166045791 - L1M4 LINE L1 -798 5348 5132 1751 174 7 20 chrX 10928384 10928678 -166045462 + AluJo SINE Alu 2 291 -21 395 222 25 0 chrX 10928715 10928796 -166045344 - L2 LINE L2 0 3272 3190 288 0 0 0 chrX 10929622 10929654 -166044486 + (TG)n Simple_repeat Simple_repeat 1 32 0 406 326 51 6 chrX 10929844 10930022 -166044118 + MIR SINE MIR 65 250 -12 426 186 0 0 chrX 10931548 10931618 -166042522 - MER45C DNA AcHobo -2 951 882 630 178 0 0 chrX 10931624 10931731 -166042409 + FRAM SINE Alu 40 146 -30 1909 221 98 113 chrX 10931757 10932634 -166041506 - MER45C DNA AcHobo -89 864 1 186 189 0 0 chrX 10933680 10933717 -166040423 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 1106 265 55 11 chrX 10934017 10934364 -166039776 - L1MC4 LINE L1 -522 7520 7159 315 100 0 0 chrX 10934364 10934404 -166039736 + Alu SINE Alu 1 40 -268 920 159 0 37 chrX 10934404 10934567 -166039573 + AluJb SINE Alu 144 300 -12 2688 230 70 110 chrX 10934711 10935977 -166038163 - L1MC4a LINE L1 -902 6906 5692 680 289 16 11 chrX 10936526 10936716 -166037424 + MLT1I LTR MaLR 57 247 -162 3849 179 56 13 chrX 10936716 10937486 -166036654 + L1ME2 LINE L1 5341 6143 -21 542 228 0 2 chrX 10937508 10937653 -166036487 + MLT1I LTR MaLR 235 409 0 320 194 0 117 chrX 10937664 10937715 -166036425 - MER103 DNA DNA -69 97 62 2319 110 7 0 chrX 10937715 10938016 -166036124 + AluSx SINE Alu 1 303 -9 320 194 0 117 chrX 10938016 10938067 -166036073 - MER103 DNA DNA -104 62 7 207 125 0 0 chrX 10938278 10938318 -166035822 + (A)n Simple_repeat Simple_repeat 1 40 0 2131 254 63 12 chrX 10940453 10941091 -166033049 - L1ME3A LINE L1 0 6170 5501 781 280 37 5 chrX 10941133 10941347 -166032793 + MIR SINE MIR 4 224 -38 670 182 20 27 chrX 10941347 10941495 -166032645 + AluJb SINE Alu 1 147 -165 1740 115 8 28 chrX 10941620 10941900 -166032240 + AluSx SINE Alu 35 309 0 425 254 78 28 chrX 10941900 10942117 -166032023 - L1ME3A LINE L1 -1818 4328 4101 1327 155 14 0 chrX 10942118 10942331 -166031809 + AluJo SINE Alu 86 301 -11 1076 261 76 43 chrX 10942347 10942876 -166031264 - L1ME3A LINE L1 -2058 4088 3543 1369 254 57 30 chrX 10943173 10943704 -166030436 + L1PBa LINE L1 6 550 -6313 6215 140 20 14 chrX 10943814 10945440 -166028700 + L1PB1 LINE L1 4514 6150 -1 335 264 37 88 chrX 10945429 10945509 -166028631 + L1ME2 LINE L1 3259 3342 -2804 * 1760 95 0 0 chrX 10945509 10945731 -166028409 + AluSg/x SINE Alu 83 304 -6 335 264 37 88 chrX 10945731 10945945 -166028195 + L1ME2 LINE L1 3342 3538 -2608 1596 161 37 74 chrX 10946074 10946398 -166027742 - AluJo SINE Alu 0 312 1 2426 97 0 0 chrX 10946454 10946763 -166027377 + AluSg SINE Alu 1 309 -1 1505 237 78 58 chrX 10946799 10947517 -166026623 + L1ME2 LINE L1 5204 5951 -211 34 42 0 0 chrX 10947726 10947774 -166026366 + AT_rich Low_complexity Low_complexity 1 48 0 874 268 124 18 chrX 10947779 10948883 -166025257 + HAL1 LINE L1 1173 2474 -33 458 191 18 18 chrX 10948919 10949029 -166025111 + L1ME2 LINE L1 6041 6150 -14 330 231 54 97 chrX 10949080 10949266 -166024874 + L1MC4 LINE L1 7864 8041 -1 294 296 12 0 chrX 10949801 10949882 -166024258 - MIR SINE MIR -55 153 72 1863 157 36 22 chrX 10950111 10950468 -166023672 + L1MB5 LINE L1 5813 6174 0 519 219 22 15 chrX 10950468 10950605 -166023535 + L1MC4 LINE L1 7905 8042 0 493 89 9 107 chrX 10951345 10951457 -166022683 + L1MB2 LINE L1 6069 6169 -2 946 168 47 12 chrX 10952082 10952241 -166021899 + Charlie5 DNA MER1_type 34 186 -2399 2424 79 3 31 chrX 10952241 10952558 -166021582 - AluSx SINE Alu -4 308 1 946 168 47 12 chrX 10952558 10952639 -166021501 + Charlie5 DNA MER1_type 186 2585 0 257 321 38 19 chrX 10954803 10954909 -166019231 + MIR SINE MIR 126 233 -29 673 257 38 79 chrX 10955239 10955438 -166018702 - L1MEd LINE L1 -4721 1589 1383 2232 118 0 9 chrX 10955438 10955753 -166018387 - AluSx SINE Alu 0 312 1 673 257 38 79 chrX 10955753 10956053 -166018087 - L1MEd LINE L1 -4927 1383 1067 2448 84 0 3 chrX 10956215 10956526 -166017614 + AluSx SINE Alu 1 310 -2 2058 125 17 7 chrX 10956550 10956838 -166017302 + AluJb SINE Alu 2 292 -20 285 191 0 63 chrX 10957561 10957624 -166016516 - MER91 DNA MER1_type -13 127 69 767 126 71 0 chrX 10957865 10957992 -166016148 - MSTB LTR MaLR 0 428 293 778 85 138 8 chrX 10957992 10958122 -166016018 - MSTB LTR MaLR -279 147 1 211 226 96 78 chrX 10958758 10958803 -166015337 + MIR3 SINE MIR 65 108 -100 1617 81 41 0 chrX 10958803 10959024 -166015116 + MER30 DNA MER1_type 1 230 0 211 226 96 78 chrX 10959024 10959093 -166015047 + MIR3 SINE MIR 108 181 -27 987 218 115 44 chrX 10959310 10959631 -166014509 - L1ME3A LINE L1 0 6170 5827 288 0 0 0 chrX 10960086 10960118 -166014022 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 383 267 136 21 chrX 10960122 10960313 -166013827 - MIR SINE MIR -4 258 46 278 213 80 0 chrX 10960704 10960779 -166013361 + L2 LINE L2 3233 3313 0 2134 194 129 70 chrX 10960886 10961666 -166012474 - LTR1B LTR ERV1 0 826 1 232 50 0 0 chrX 10961691 10961731 -166012409 + Alu SINE Alu 263 302 -1 662 146 127 0 chrX 10961771 10961881 -166012259 + FAM SINE Alu 46 169 -16 5194 147 42 13 chrX 10962443 10963732 -166010408 - L1MB4 LINE L1 0 6180 4852 2508 62 113 0 chrX 10963732 10964068 -166010072 - MER51B LTR ERV1 -3 374 1 5194 147 42 13 chrX 10964068 10964100 -166010040 - L1MB4 LINE L1 -1328 4852 4822 1871 149 0 26 chrX 10964332 10964640 -166009500 + AluJb SINE Alu 11 310 -2 216 200 0 18 chrX 10964779 10964834 -166009306 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 2303 91 17 3 chrX 10964938 10965236 -166008904 + AluSx SINE Alu 1 302 -10 236 174 87 0 chrX 10965663 10965709 -166008431 + MER5A DNA MER1_type 1 50 -139 210 176 0 0 chrX 10965747 10965798 -166008342 + T-rich Low_complexity Low_complexity 1 51 0 1840 145 34 3 chrX 10965800 10966097 -166008043 - AluJb SINE Alu -6 306 1 929 262 20 12 chrX 10966107 10966359 -166007781 - MIR SINE MIR -3 259 6 909 295 99 18 chrX 10966835 10967228 -166006912 + LTR16C LTR ERVL 1 425 -66 417 253 86 19 chrX 10967479 10967641 -166006499 - MIR SINE MIR -17 245 73 182 222 0 0 chrX 10969744 10969780 -166004360 + MIR SINE MIR 223 258 -4 633 218 47 29 chrX 10970178 10970237 -166003903 - MER5B DNA MER1_type -4 174 118 2316 117 3 0 chrX 10970237 10970545 -166003595 + AluSx SINE Alu 1 309 -3 633 218 47 29 chrX 10970545 10970655 -166003485 - MER5B DNA MER1_type -60 118 2 2257 94 0 0 chrX 10970927 10971235 -166002905 - AluSx SINE Alu 0 308 1 262 274 42 0 chrX 10971634 10971724 -166002416 - MIR SINE MIR -62 146 56 212 271 259 0 chrX 10971741 10971826 -166002314 - MIR SINE MIR -143 119 13 1007 152 0 18 chrX 10971877 10972048 -166002092 - FAM SINE Alu -7 168 1 1903 110 20 14 chrX 10972739 10973031 -166001109 + AluSg SINE Alu 1 294 -16 405 119 32 82 chrX 10973723 10973841 -166000299 - MLT1J2 LTR MaLR 0 450 286 1949 147 0 26 chrX 10973994 10974300 -165999840 + AluJo SINE Alu 1 298 -14 2403 77 0 0 chrX 10974894 10975179 -165998961 + AluSc SINE Alu 1 285 -24 405 297 8 16 chrX 10975594 10975743 -165998397 + MER5A DNA MER1_type 7 143 -35 22 35 0 0 chrX 10975890 10975919 -165998221 + AT_rich Low_complexity Low_complexity 1 29 0 1758 84 0 5 chrX 10976048 10976262 -165997878 + AluSx SINE Alu 1 213 -99 991 113 0 0 chrX 10976263 10976422 -165997718 + AluSg/x SINE Alu 157 315 0 2366 101 99 3 chrX 10977718 10978063 -165996077 + MER83B LTR ERV1 1 378 0 251 135 58 0 chrX 10978541 10978593 -165995547 + L2 LINE L2 3258 3312 -1 2053 120 13 28 chrX 10978936 10979253 -165994887 - AluSx SINE Alu 0 312 1 494 248 163 15 chrX 10979674 10979876 -165994264 - MIR SINE MIR 0 262 31 430 248 183 7 chrX 10980941 10981094 -165993046 + MER5A DNA MER1_type 9 188 -1 1808 194 118 37 chrX 10982600 10982808 -165991332 + MLT1F1 LTR MaLR 1 191 -376 369 0 0 0 chrX 10982808 10982849 -165991291 + (CAT)n Simple_repeat Simple_repeat 3 43 0 1808 194 118 37 chrX 10982849 10983161 -165990979 + MLT1F1 LTR MaLR 191 567 0 267 228 18 0 chrX 10983194 10983251 -165990889 - L2 LINE L2 -2 3311 3254 2020 134 0 0 chrX 10983621 10983934 -165990206 + AluJb SINE Alu 1 313 0 221 351 47 27 chrX 10984188 10984336 -165989804 + L2 LINE L2 2831 2981 -291 201 213 21 0 chrX 10984961 10985008 -165989132 + (TA)n Simple_repeat Simple_repeat 2 49 0 2051 145 34 8 chrX 10985756 10986107 -165988033 - MLT1A1 LTR MaLR 0 365 6 219 182 0 0 chrX 10986125 10986169 -165987971 + L2 LINE L2 3229 3272 0 2335 100 0 0 chrX 10986887 10987178 -165986962 + AluSq SINE Alu 1 291 -22 559 192 0 0 chrX 10987178 10987282 -165986858 - MER96B DNA MER1_type? -313 104 1 241 212 341 12 chrX 10987300 10987385 -165986755 - L2 LINE L2 -22 3250 3138 924 258 24 16 chrX 10987503 10987755 -165986385 + MIR SINE MIR 5 258 -4 744 115 0 0 chrX 10988529 10988642 -165985498 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 1633 121 0 28 chrX 10989635 10989884 -165984256 + AluSg/x SINE Alu 66 307 -5 533 190 68 68 chrX 10990030 10990193 -165983947 + MLT1J LTR MaLR 346 508 -3 443 312 125 30 chrX 10990471 10990942 -165983198 - L2 LINE L2 -831 2483 1968 2000 248 38 4 chrX 10990965 10991437 -165982703 + LTR16C LTR ERVL 4 491 0 2406 57 0 23 chrX 10991872 10992173 -165981967 + AluY SINE Alu 1 294 -17 330 232 112 48 chrX 10992381 10992506 -165981634 - L1ME4a LINE L1 -1 6120 5988 941 160 0 0 chrX 10992625 10992775 -165981365 - AluSg/x SINE Alu -6 306 157 652 271 51 20 chrX 10992784 10993076 -165981064 - L1ME4a LINE L1 -286 5835 5535 241 296 59 0 chrX 10993489 10993624 -165980516 - L1ME4a LINE L1 -3802 2344 2202 1855 148 3 7 chrX 10993648 10993938 -165980202 - AluSx SINE Alu -23 289 1 2511 93 0 0 chrX 10994056 10994369 -165979771 - AluSq SINE Alu 0 313 1 25 51 0 0 chrX 10994464 10994503 -165979637 + AT_rich Low_complexity Low_complexity 1 39 0 2101 143 0 3 chrX 10994841 10995149 -165978991 - AluJo SINE Alu -5 307 1 418 214 192 11 chrX 10995516 10995698 -165978442 + MIR SINE MIR 48 262 0 693 187 216 0 chrX 10995915 10996086 -165978054 + MER3 DNA MER1_type 1 208 -1 247 138 0 108 chrX 10996097 10996162 -165977978 + HsTC2 DNA Tc2 1826 1883 -15 408 323 66 0 chrX 10996211 10996378 -165977762 - Tigger8 DNA MER2_type -171 495 318 615 201 34 126 chrX 10996505 10996768 -165977372 + MER112 DNA MER1_type 1 239 -21 223 195 26 39 chrX 10996773 10996850 -165977290 - L2 LINE L2 -3093 221 146 1956 169 66 6 chrX 10996875 10997225 -165976915 - MLT1B LTR MaLR -3 387 17 537 289 19 38 chrX 10999175 10999386 -165974754 - L1ME LINE L1 -394 5727 5521 238 294 86 49 chrX 10999446 10999609 -165974531 + MIR SINE MIR 24 192 -70 2244 127 33 30 chrX 11001084 11001446 -165972694 + THE1B LTR MaLR 1 363 -1 1366 250 77 23 chrX 11001473 11001865 -165972275 - LTR16C LTR ERVL 0 491 79 391 200 11 67 chrX 11003131 11003221 -165970919 - MIR SINE MIR -171 91 7 185 0 0 39 chrX 11003381 11003407 -165970733 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2321 122 0 0 chrX 11003411 11003723 -165970417 - AluSx SINE Alu 0 312 1 1942 107 11 0 chrX 11005280 11005543 -165968597 - AluSq SINE Alu -47 266 1 225 0 0 0 chrX 11005589 11005614 -165968526 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 2057 126 3 0 chrX 11006143 11006428 -165967712 - AluSx SINE Alu -26 286 1 1634 153 7 54 chrX 11006624 11006918 -165967222 + AluJo SINE Alu 3 282 -30 2464 67 0 10 chrX 11006938 11007250 -165966890 - AluY SINE Alu -2 309 1 1210 174 17 13 chrX 11007450 11007680 -165966460 + MER58B DNA MER1_type 111 341 0 361 178 168 19 chrX 11008712 11008819 -165965321 + L2 LINE L2 3190 3312 -1 319 305 0 25 chrX 11008815 11008933 -165965207 + MIR3 SINE MIR 87 201 -7 * 1863 153 10 16 chrX 11009106 11009414 -165964726 - AluJo SINE Alu -6 306 1 247 263 0 53 chrX 11009565 11009641 -165964499 + MIR3 SINE MIR 108 179 -29 297 209 220 11 chrX 11009986 11010077 -165964063 - MIR SINE MIR -112 150 41 1195 142 35 52 chrX 11010756 11010935 -165963205 + MLT1J2 LTR MaLR 1 177 -273 2287 109 0 13 chrX 11010935 11011238 -165962902 + AluSx SINE Alu 1 299 -13 1195 142 35 52 chrX 11011238 11011290 -165962850 + MLT1J2 LTR MaLR 177 228 -222 1090 133 51 41 chrX 11011379 11011574 -165962566 + MER3 DNA MER1_type 13 209 0 453 213 71 71 chrX 11011417 11011614 -165962526 - MER3 DNA MER1_type 0 209 13 * 1903 241 32 27 chrX 11011621 11011682 -165962458 - MLT2F LTR ERVL 0 663 604 393 22 0 0 chrX 11011682 11011728 -165962412 + (CA)n Simple_repeat Simple_repeat 1 46 0 1903 241 32 27 chrX 11011728 11012280 -165961860 - MLT2F LTR ERVL -59 604 1 285 268 45 18 chrX 11012425 11012537 -165961603 + L1ME4a LINE L1 6006 6120 -1 2379 128 11 19 chrX 11012885 11013252 -165960888 + THE1B LTR MaLR 1 364 0 601 208 17 67 chrX 11013320 11013498 -165960642 - MIR SINE MIR -92 170 2 952 157 0 61 chrX 11013810 11013974 -165960166 + L1MB3 LINE L1 5980 6132 -51 2260 104 0 17 chrX 11013974 11014273 -165959867 + AluSx SINE Alu 1 294 -18 952 157 0 61 chrX 11014273 11014305 -165959835 + L1MB3 LINE L1 6132 6164 -19 251 200 26 9 chrX 11014307 11014422 -165959718 + (TA)n Simple_repeat Simple_repeat 1 117 0 224 252 55 20 chrX 11014757 11014888 -165959252 + MIR SINE MIR 4 186 -76 1538 246 170 21 chrX 11014996 11015513 -165958627 - MLT1G1 LTR MaLR 0 595 2 1433 136 0 49 chrX 11015595 11015903 -165958237 + AluY SINE Alu 1 293 -18 332 201 117 145 chrX 11016135 11016259 -165957881 + MER5B DNA MER1_type 1 120 -58 731 179 0 0 chrX 11016259 11016382 -165957758 - FLAM_A SINE Alu -10 123 1 332 201 117 145 chrX 11016382 11016436 -165957704 + MER5B DNA MER1_type 120 174 -4 762 251 136 23 chrX 11016590 11016944 -165957196 + LTR16C LTR ERVL 96 489 -2 1405 80 144 0 chrX 11017247 11017448 -165956692 + MER30 DNA MER1_type 1 230 0 357 191 0 15 chrX 11017455 11017523 -165956617 + MER106B DNA MER1_type 1 67 -992 186 71 0 0 chrX 11017530 11017558 -165956582 + (A)n Simple_repeat Simple_repeat 1 28 0 393 167 0 13 chrX 11017573 11017651 -165956489 - MER96 DNA MER1_type? 0 175 99 814 257 66 7 chrX 11017705 11017977 -165956163 - L2 LINE L2 -196 3117 2830 653 192 171 5 chrX 11018485 11018678 -165955462 + MIR SINE MIR 33 257 -5 393 192 20 139 chrX 11019613 11019764 -165954376 - LTR16C LTR ERVL -49 442 310 986 224 95 81 chrX 11019959 11020392 -165953748 + LTR33A LTR ERVL 1 439 -84 323 261 0 0 chrX 11020720 11020808 -165953332 - Charlie8 DNA MER1_type -2246 171 84 1396 186 84 11 chrX 11020823 11021108 -165953032 + AluJo SINE Alu 1 306 -6 2334 71 0 0 chrX 11021379 11021660 -165952480 + AluSx SINE Alu 1 281 -31 204 97 0 0 chrX 11021664 11021695 -165952445 + (TAA)n Simple_repeat Simple_repeat 3 33 0 343 301 17 40 chrX 11021750 11021923 -165952217 + MIR SINE MIR 6 174 -88 569 133 7 119 chrX 11021928 11022071 -165952069 - MLT1D LTR MaLR -291 214 88 1600 217 179 50 chrX 11022446 11023000 -165951140 + MLT1E2 LTR MaLR 1 625 -1 2267 113 0 0 chrX 11023983 11024276 -165949864 - AluSx SINE Alu -19 293 1 1887 129 17 27 chrX 11024873 11025168 -165948972 + AluJb SINE Alu 1 292 -20 622 278 70 22 chrX 11025557 11025971 -165948169 + L1ME4a LINE L1 5480 5963 -158 220 234 0 0 chrX 11025972 11026019 -165948121 + (TA)n Simple_repeat Simple_repeat 2 48 0 427 265 96 0 chrX 11026020 11026186 -165947954 + L1ME4a LINE L1 5935 6116 -5 288 285 114 47 chrX 11026534 11026727 -165947413 - L1MA9 LINE L1 -30 6282 6077 287 301 10 10 chrX 11027313 11027416 -165946724 - MIR3 SINE MIR -25 183 81 215 218 36 0 chrX 11027699 11027754 -165946386 - MIR SINE MIR -124 138 82 651 232 85 49 chrX 11027756 11027980 -165946160 + MIR SINE MIR 31 262 0 333 0 0 0 chrX 11030332 11030369 -165943771 + (TG)n Simple_repeat Simple_repeat 2 38 0 1107 261 160 35 chrX 11031276 11031932 -165942208 - L1ME4a LINE L1 0 6121 5384 2518 55 0 0 chrX 11032039 11032331 -165941809 - AluY SINE Alu -17 294 3 265 293 67 27 chrX 11033513 11033663 -165940477 - L2 LINE L2 -34 3279 3124 2042 146 0 0 chrX 11033749 11034043 -165940097 - AluJb SINE Alu -18 294 1 1088 214 42 5 chrX 11034137 11034352 -165939788 + MER58A DNA MER1_type 2 224 0 223 175 0 79 chrX 11035349 11035412 -165938728 + L2 LINE L2 3171 3228 -85 1869 142 33 20 chrX 11035912 11036215 -165937925 - AluSx SINE Alu -5 307 1 978 118 0 15 chrX 11036215 11036351 -165937789 - AluSg SINE Alu -176 134 1 1245 106 0 0 chrX 11036354 11036515 -165937625 + AluSg/x SINE Alu 140 300 -10 321 339 0 0 chrX 11037552 11037661 -165936479 - MIR SINE MIR 0 262 154 2082 122 0 11 chrX 11037662 11037982 -165936158 - AluSp SINE Alu 0 317 1 2314 103 7 0 chrX 11038047 11038347 -165935793 - AluSq SINE Alu -11 302 1 1235 265 49 32 chrX 11038403 11038811 -165935329 + LTR33 LTR ERVL 101 515 -6 2276 132 42 20 chrX 11038951 11039307 -165934833 - THE1B LTR MaLR 0 364 1 2065 152 0 0 chrX 11039811 11040120 -165934020 + AluSx SINE Alu 1 309 -3 2015 146 7 3 chrX 11040668 11040963 -165933177 - AluJo SINE Alu -16 296 1 1197 230 59 64 chrX 11041305 11041710 -165932430 - MLT1J LTR MaLR -8 503 101 203 204 41 0 chrX 11041991 11042040 -165932100 + GA-rich Low_complexity Low_complexity 1 51 0 293 296 61 68 chrX 11042223 11042238 -165931902 + L2 LINE L2 3141 3155 -117 1252 163 0 41 chrX 11042238 11042484 -165931656 + MER106A DNA MER1_type 1 236 0 293 296 61 68 chrX 11042484 11042600 -165931540 + L2 LINE L2 3155 3271 -1 2396 97 0 0 chrX 11042863 11043171 -165930969 + AluSc SINE Alu 1 308 -1 3265 150 25 12 chrX 11043633 11043677 -165930463 - L1MB7 LINE L1 -357 5827 5785 1832 165 7 20 chrX 11043677 11043980 -165930160 - AluJb SINE Alu -13 299 1 3265 150 25 12 chrX 11043980 11044651 -165929489 - L1MB7 LINE L1 -399 5785 5106 43883 31 22 1 chrX 11044656 11050684 -165923456 - L1PA2 LINE L1 0 6155 1 4801 211 93 62 chrX 11050655 11051689 -165922451 - L1M4 LINE L1 -1002 5144 4144 * 1443 106 0 38 chrX 11051689 11051926 -165922214 + AluSg/x SINE Alu 81 308 -4 4801 211 93 62 chrX 11051926 11052165 -165921975 - L1M4 LINE L1 -2002 4144 3914 2130 123 7 0 chrX 11052165 11052473 -165921667 - AluSx SINE Alu -2 310 1 4801 211 93 62 chrX 11052473 11053087 -165921053 - L1M4 LINE L1 -2232 3914 3124 1095 238 33 26 chrX 11053302 11053575 -165920565 + MLT1J1 LTR MaLR 7 281 -165 2097 105 3 3 chrX 11053799 11054095 -165920045 + AluSx SINE Alu 1 296 -16 405 211 9 18 chrX 11054101 11054210 -165919930 + L1MC4 LINE L1 2006 6983 -1339 308 278 52 10 chrX 11054128 11054225 -165919915 - L1MC3 LINE L1 -1139 6646 6546 * 392 286 80 0 chrX 11054241 11054353 -165919787 + L2 LINE L2 3152 3272 0 185 93 53 40 chrX 11054464 11054539 -165919601 + (TA)n Simple_repeat Simple_repeat 1 76 0 31 68 0 0 chrX 11054539 11054598 -165919542 + AT_rich Low_complexity Low_complexity 1 59 0 1966 120 7 7 chrX 11054687 11054986 -165919154 + AluSx SINE Alu 1 299 -13 385 211 0 44 chrX 11055030 11055120 -165919020 - MER20 DNA MER1_type -133 86 1 2332 81 0 0 chrX 11055420 11055716 -165918424 - AluSp SINE Alu -17 296 1 1619 54 0 10 chrX 11056258 11056462 -165917678 + L1PA5 LINE L1 5949 6150 -4 514 273 149 7 chrX 11056591 11056745 -165917395 - MER5A DNA MER1_type 0 189 14 511 145 3 3 chrX 11057070 11057175 -165916965 - L1MB7 LINE L1 -357 5827 5723 1589 162 0 72 chrX 11057188 11057509 -165916631 - AluJb SINE Alu -14 298 1 222 249 0 33 chrX 11057510 11057582 -165916558 - MER5A DNA MER1_type -115 74 4 415 237 68 25 chrX 11057584 11057702 -165916438 - MIR SINE MIR -54 208 86 726 211 72 6 chrX 11057751 11057917 -165916223 + MER5B DNA MER1_type 2 178 0 247 253 0 0 chrX 11057917 11057975 -165916165 - MIR3 SINE MIR -48 160 102 201 39 0 0 chrX 11057986 11058012 -165916128 + (A)n Simple_repeat Simple_repeat 1 26 0 371 224 145 0 chrX 11058484 11058560 -165915580 - L2 LINE L2 -2 3311 3225 760 276 113 69 chrX 11058610 11058963 -165915177 + MLT1K LTR MaLR 132 468 -120 180 0 0 0 chrX 11058963 11058983 -165915157 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1599 154 4 0 chrX 11058991 11059238 -165914902 - AluJo SINE Alu -64 248 1 760 276 113 69 chrX 11059238 11059307 -165914833 + MLT1K LTR MaLR 474 582 -6 421 288 7 36 chrX 11059314 11059367 -165914773 - MIR3 SINE MIR -2 206 153 1019 188 16 0 chrX 11059367 11059553 -165914587 + MER5A DNA MER1_type 1 189 0 421 288 7 36 chrX 11059553 11059638 -165914502 - MIR3 SINE MIR -55 153 72 569 231 43 129 chrX 11060547 11060654 -165913486 - L2 LINE L2 0 3313 3198 2203 104 10 0 chrX 11060654 11060963 -165913177 + AluSx SINE Alu 1 312 0 569 231 43 129 chrX 11060963 11061158 -165912982 - L2 LINE L2 -115 3198 3037 2086 134 0 6 chrX 11061261 11061575 -165912565 + AluJb SINE Alu 1 312 0 467 250 50 20 chrX 11061630 11061805 -165912335 + MLT1J1 LTR MaLR 66 236 -173 280 247 62 0 chrX 11061860 11061941 -165912199 + MLT1I LTR MaLR 324 409 0 547 214 221 0 chrX 11062242 11062382 -165911758 + MER5A DNA MER1_type 10 180 -9 2054 149 51 9 chrX 11062415 11062765 -165911375 - MLT1A1 LTR MaLR 0 365 1 933 153 5 104 chrX 11062860 11062921 -165911219 + MER5A DNA MER1_type 8 73 -116 2194 97 3 3 chrX 11062921 11063230 -165910910 + AluSx SINE Alu 1 309 -3 933 153 5 104 chrX 11063230 11063370 -165910770 + MER5A DNA MER1_type 73 189 0 232 135 0 0 chrX 11063380 11063417 -165910723 + MLT1L LTR MaLR 158 194 -421 306 223 45 55 chrX 11063422 11063523 -165910617 + MLT1K LTR MaLR 147 246 -342 264 278 31 0 chrX 11063720 11063817 -165910323 + MLT1L LTR MaLR 509 608 -7 2073 126 7 0 chrX 11064046 11064464 -165909676 + AluSx SINE Alu 1 420 0 1752 189 142 3 chrX 11064517 11064714 -165909426 + L1MD3 LINE L1 6820 6988 -1007 180 77 0 0 chrX 11064714 11064740 -165909400 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1752 189 142 3 chrX 11064740 11064929 -165909211 + L1MD3 LINE L1 6988 7260 -735 245 295 105 11 chrX 11065747 11065804 -165908336 + L2 LINE L2 3169 3219 -53 1190 245 39 48 chrX 11065804 11066137 -165908003 + MLT1I LTR MaLR 1 332 -77 1814 118 41 0 chrX 11066137 11066442 -165907698 + AluSx SINE Alu 1 316 0 1190 245 39 48 chrX 11066442 11066519 -165907621 + MLT1I LTR MaLR 332 408 -1 245 295 105 11 chrX 11066519 11066556 -165907584 + L2 LINE L2 3219 3272 0 280 328 82 45 chrX 11066838 11066972 -165907168 - MIR3 SINE MIR -67 141 3 551 206 128 67 chrX 11066986 11067166 -165906974 + MIR SINE MIR 17 207 -55 2114 114 3 10 chrX 11067220 11067527 -165906613 - AluJb SINE Alu -7 305 1 1030 175 0 0 chrX 11068233 11068399 -165905741 - FRAM SINE Alu 0 166 1 575 221 46 0 chrX 11068402 11068533 -165905607 + L1MC/D LINE L1 5584 5720 -2322 850 161 0 54 chrX 11068537 11068686 -165905454 - AluJo SINE Alu -138 174 34 268 152 0 0 chrX 11068797 11068843 -165905297 - L1ME3A LINE L1 -3 6167 6122 1699 236 47 9 chrX 11068908 11069352 -165904788 - L1ME3A LINE L1 -187 5983 5523 273 221 53 84 chrX 11070010 11070105 -165904035 + MIR3 SINE MIR 114 205 -3 363 241 15 30 chrX 11070592 11070725 -165903415 + C-rich Low_complexity Low_complexity 5 135 0 33 56 0 0 chrX 11070766 11070820 -165903320 + GC_rich Low_complexity Low_complexity 1 54 0 515 156 31 0 chrX 11072150 11072246 -165901894 - MER5A DNA MER1_type -79 110 12 3151 140 47 45 chrX 11072404 11072998 -165901142 - LTR49 LTR ERV1 0 595 1 598 94 198 0 chrX 11073091 11073187 -165900953 + MER45A DNA AcHobo 63 177 -1 239 309 75 11 chrX 11074731 11074825 -165899315 + L2 LINE L2 2588 2687 -627 1924 133 13 0 chrX 11074870 11075171 -165898969 - AluSx SINE Alu -5 307 3 1703 160 3 17 chrX 11075173 11075473 -165898667 - AluJo SINE Alu -16 296 1 610 97 0 43 chrX 11075478 11075571 -165898569 - AluJo/FRAM SINE Alu -17 295 207 989 127 20 0 chrX 11075571 11075721 -165898419 - AluSx SINE Alu -154 158 6 689 260 56 52 chrX 11075899 11076168 -165897972 + L2 LINE L2 3044 3313 0 1119 205 87 0 chrX 11076357 11076586 -165897554 - MIR SINE MIR 0 262 14 1299 142 4 36 chrX 11076659 11076884 -165897256 + MER20 DNA MER1_type 2 219 0 329 236 22 34 chrX 11076892 11076981 -165897159 + MER5B DNA MER1_type 1 88 -90 * 344 345 8 25 chrX 11076968 11077087 -165897053 + L2 LINE L2 1221 1337 -1977 2159 101 0 16 chrX 11077297 11077614 -165896526 - AluSx SINE Alu 0 312 1 2230 245 70 66 chrX 11077620 11078024 -165896116 - L1MC4 LINE L1 -1 8041 7640 189 0 0 0 chrX 11078024 11078045 -165896095 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1949 91 0 0 chrX 11078048 11078300 -165895840 - AluSx SINE Alu -55 257 6 2230 245 70 66 chrX 11078300 11078414 -165895726 - L1MC4 LINE L1 -403 7639 7527 2189 91 0 34 chrX 11078414 11078734 -165895406 - AluSc SINE Alu 0 309 1 2230 245 70 66 chrX 11078734 11079028 -165895112 - L1MC4 LINE L1 -515 7527 7236 1738 145 3 7 chrX 11079028 11079310 -165894830 + AluJo SINE Alu 1 281 -31 216 0 0 0 chrX 11079313 11079337 -165894803 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2230 245 70 66 chrX 11079337 11079566 -165894574 - L1MC4 LINE L1 -807 7235 6985 1295 278 238 17 chrX 11079587 11080512 -165893628 + L2 LINE L2 1606 2734 -580 2092 127 0 9 chrX 11080684 11080999 -165893141 - AluSx SINE Alu 0 312 1 317 239 0 102 chrX 11081224 11081312 -165892828 + L2 LINE L2 3192 3270 -2 602 150 0 0 chrX 11082335 11082435 -165891705 - FLAM_A SINE Alu 0 142 43 1405 256 109 10 chrX 11082499 11083020 -165891120 - L1ME3A LINE L1 -3 6167 5600 471 152 63 0 chrX 11083136 11083215 -165890925 - AluJ/FLAM SINE Alu -228 84 1 2170 70 22 38 chrX 11083266 11083581 -165890559 - AluY SINE Alu -1 310 1 186 71 0 0 chrX 11083746 11083774 -165890366 + (A)n Simple_repeat Simple_repeat 1 28 0 365 242 191 38 chrX 11084125 11084282 -165889858 - MER5A DNA MER1_type 0 189 9 2263 81 0 3 chrX 11084467 11084763 -165889377 - AluSx SINE Alu -17 295 1 237 33 0 0 chrX 11084885 11084915 -165889225 + (CA)n Simple_repeat Simple_repeat 2 31 0 594 206 122 69 chrX 11085097 11085286 -165888854 + LTR16C LTR ERVL 112 310 -181 427 263 166 49 chrX 11135288 11135478 -165838662 + LTR1 LTR ERV1 88 425 -546 * 1510 193 57 126 chrX 11135462 11136155 -165837985 + LTR1B LTR ERV1 314 1020 0 2287 145 72 35 chrX 11136156 11136645 -165837495 + MER4-int LTR ERV1 5863 6369 -229 2837 192 42 128 chrX 11136769 11137637 -165836503 - MER21A LTR ERV1 -9 922 130 437 165 126 39 chrX 11137651 11137778 -165836362 - MER21A LTR ERV1 -767 164 27 203 381 29 0 chrX 11138699 11138804 -165835336 - MIR SINE MIR -85 123 16 384 222 178 22 chrX 11140463 11140598 -165833542 - MER5A DNA MER1_type 0 189 34 4311 147 102 9 chrX 11141132 11141360 -165832780 - Tigger3b DNA MER2_type -2140 888 683 2227 99 27 0 chrX 11141360 11141653 -165832487 - AluSg SINE Alu -9 301 1 4311 147 102 9 chrX 11141653 11142236 -165831904 - Tigger3b DNA MER2_type -2345 683 1 953 308 33 13 chrX 11142245 11142635 -165831505 + HAL1 LINE L1 85 482 -2025 262 300 181 6 chrX 11142795 11142955 -165831185 + HAL1 LINE L1 765 952 -1555 740 142 0 0 chrX 11143016 11143122 -165831018 + AluSq/x SINE Alu 2 107 -206 2019 139 16 0 chrX 11143643 11143946 -165830194 - AluJb SINE Alu -4 308 1 1034 123 77 82 chrX 11143984 11144204 -165829936 - MER20 DNA MER1_type 0 219 1 2081 134 0 3 chrX 11144756 11145055 -165829085 + AluSx SINE Alu 1 298 -14 478 238 95 8 chrX 11145331 11145457 -165828683 + MIR SINE MIR 62 198 -64 2190 89 13 36 chrX 11146083 11146385 -165827755 + AluSq SINE Alu 1 295 -18 263 108 0 0 chrX 11148303 11148340 -165825800 + L1PA13 LINE L1 1538 1574 -5213 216 0 0 0 chrX 11148340 11148364 -165825776 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 575 281 175 16 chrX 11148407 11148710 -165825430 + L3 LINE CR1 944 1294 -283 1194 233 113 43 chrX 11148865 11149308 -165824832 + MLT1K LTR MaLR 1 474 -2 226 249 139 74 chrX 11149582 11150025 -165824115 + L2 LINE L2 2614 3083 -189 2388 98 0 13 chrX 11151765 11152080 -165822060 - AluSx SINE Alu -1 311 1 270 311 23 35 chrX 11152518 11152775 -165821365 - L2 LINE L2 -613 2701 2448 277 0 0 0 chrX 11153489 11153525 -165820615 + L1MB3 LINE L1 6148 6183 0 3634 194 57 53 chrX 11153740 11154705 -165819435 - LTR5 LTR ERVK 0 969 1 180 125 47 16 chrX 11154759 11154823 -165819317 + (TTAA)n Simple_repeat Simple_repeat 1 66 0 1992 122 21 0 chrX 11155424 11155737 -165818403 - AluSx SINE Alu 0 319 1 2363 75 0 13 chrX 11155857 11156163 -165817977 - AluSc SINE Alu -7 302 1 312 79 0 0 chrX 11156340 11156378 -165817762 + tRNA-Asp-GAC tRNA tRNA 1 38 -37 2203 82 18 0 chrX 11156415 11156715 -165817425 - AluSx SINE Alu 0 305 1 1468 294 51 44 chrX 11156764 11157777 -165816363 + L1ME3 LINE L1 2230 3249 -2897 1695 119 107 16 chrX 11157819 11158129 -165816011 - MER44D DNA MER2_type 0 609 2 2462 97 0 0 chrX 11158320 11158630 -165815510 + AluSx SINE Alu 1 310 -2 2790 192 101 205 chrX 11158630 11159079 -165815061 - L2 LINE L2 -534 2780 2286 2545 105 11 35 chrX 11159079 11159452 -165814688 - THE1B LTR MaLR 0 364 1 2790 192 101 205 chrX 11159452 11159741 -165814399 - L2 LINE L2 -1028 2286 1969 1672 202 38 17 chrX 11159741 11160087 -165814053 + MLT1A2 LTR MaLR 20 372 -2 2790 192 101 205 chrX 11160087 11160910 -165813230 - L2 LINE L2 -1345 1969 1071 2033 276 153 35 chrX 11160931 11161290 -165812850 + L1ME3 LINE L1 3589 3904 -2242 2364 65 7 14 chrX 11161290 11161581 -165812559 + AluSx SINE Alu 1 289 -23 2033 276 153 35 chrX 11161581 11162683 -165811457 + L1ME3 LINE L1 3904 5223 -923 1286 166 5 27 chrX 11162687 11162910 -165811230 + MLT1F1 LTR MaLR 342 559 -8 675 282 65 72 chrX 11163258 11163412 -165810728 + L1ME3 LINE L1 5383 5537 -625 1271 260 84 10 chrX 11163412 11163827 -165810313 - MLT1J1 LTR MaLR 0 446 1 675 282 65 72 chrX 11163827 11164177 -165809963 + L1ME3 LINE L1 5537 5826 -336 1178 103 72 10 chrX 11164177 11164349 -165809791 + L1MA8 LINE L1 6082 6269 -22 1826 160 10 0 chrX 11164349 11164637 -165809503 - AluJb SINE Alu -21 291 1 1178 103 72 10 chrX 11164637 11164658 -165809482 + L1MA8 LINE L1 6269 6287 -4 675 282 65 72 chrX 11164658 11164711 -165809429 + L1ME3 LINE L1 5826 5878 -284 5314 178 63 51 chrX 11164836 11165462 -165808678 + Charlie1a DNA MER1_type 4 654 -2107 2228 81 20 14 chrX 11165462 11165758 -165808382 - AluSq SINE Alu -14 299 2 5314 178 63 51 chrX 11165758 11166347 -165807793 + Charlie1a DNA MER1_type 654 1234 -221 987 110 0 7 chrX 11166348 11166484 -165807656 - AluJo SINE Alu -177 135 1 1032 146 118 5 chrX 11166503 11166715 -165807425 + Charlie1a DNA MER1_type 1220 1455 0 330 310 7 28 chrX 11167021 11167166 -165806974 + L2 LINE L2 2524 2665 -649 1137 128 0 0 chrX 11167330 11167486 -165806654 + AluSp SINE Alu 138 293 -20 239 321 24 0 chrX 11168158 11168242 -165805898 - MIR SINE MIR -59 149 64 29 47 0 0 chrX 11168378 11168421 -165805719 + AT_rich Low_complexity Low_complexity 1 43 0 750 214 141 5 chrX 11168471 11168663 -165805477 - MER2 DNA MER2_type 0 345 128 238 228 35 18 chrX 11168663 11168720 -165805420 + Tigger5 DNA MER2_type 2261 2318 -5 290 175 238 0 chrX 11168722 11168785 -165805355 - Tigger5 DNA MER2_type -2245 78 1 * 782 160 20 53 chrX 11168785 11168923 -165805217 - MER2 DNA MER2_type -211 134 2 341 260 122 8 chrX 11169591 11169714 -165804426 - MIR3 SINE MIR -6 202 66 2292 109 0 3 chrX 11169770 11170081 -165804059 + AluSx SINE Alu 1 310 -2 1602 186 3 23 chrX 11170139 11170440 -165803700 - AluJb SINE Alu -16 296 2 3955 96 4 6 chrX 11171027 11171539 -165802601 - MER9 LTR ERVK 0 511 1 2001 136 0 0 chrX 11171540 11171826 -165802314 - AluJb SINE Alu -26 286 1 2448 84 0 0 chrX 11172378 11172676 -165801464 - AluSx SINE Alu -14 298 1 2302 107 10 0 chrX 11173044 11173353 -165800787 - AluSx SINE Alu 0 312 1 209 294 59 0 chrX 11173548 11173616 -165800524 - MIR SINE MIR -103 105 34 2311 104 0 0 chrX 11173632 11173930 -165800210 + AluSc SINE Alu 1 298 -11 2269 109 0 3 chrX 11175089 11175400 -165798740 - AluSx SINE Alu -2 310 1 295 261 115 46 chrX 11175596 11175726 -165798414 - L2 LINE L2 -2 3311 3173 2276 102 0 0 chrX 11175736 11176029 -165798111 - AluSx SINE Alu -19 293 1 2458 75 0 0 chrX 11176039 11176334 -165797806 - AluSc SINE Alu -14 295 1 526 276 16 45 chrX 11176334 11176600 -165797540 - L1MC4a LINE L1 -176 5945 5683 * 3120 131 23 23 chrX 11176592 11177117 -165797023 + L1MA9 LINE L1 5266 5790 -522 22 0 0 0 chrX 11177125 11177147 -165796993 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 11177161 11177211 -165796929 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 1767 144 8 0 chrX 11177215 11177478 -165796662 + MER2 DNA MER2_type 7 271 -74 2192 119 3 0 chrX 11177493 11177788 -165796352 + AluJb SINE Alu 1 296 -16 1311 126 70 0 chrX 11177825 11178040 -165796100 + L1MA9 LINE L1 5782 6011 -301 403 99 10 168 chrX 11178039 11178140 -165796000 + L1MA9 LINE L1 6228 6312 0 * 306 0 0 0 chrX 11178146 11178180 -165795960 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 11178317 11178347 -165795793 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chrX 11178403 11178425 -165795715 + (CA)n Simple_repeat Simple_repeat 1 22 0 8745 220 47 54 chrX 11178437 11179117 -165795023 - L1MB7 LINE L1 -9 6411 5727 2337 95 0 3 chrX 11179117 11179422 -165794718 - AluSq SINE Alu -9 304 1 8745 220 47 54 chrX 11179422 11179657 -165794483 - L1MB7 LINE L1 -693 5727 5492 261 0 0 0 chrX 11179657 11179686 -165794454 + (TA)n Simple_repeat Simple_repeat 2 30 0 1949 131 38 0 chrX 11179686 11179976 -165794164 - AluJb SINE Alu -11 301 1 8745 220 47 54 chrX 11179976 11180826 -165793314 - L1MB7 LINE L1 -927 5493 4638 1588 152 109 7 chrX 11180826 11181109 -165793031 - AluJo SINE Alu 0 312 1 8745 220 47 54 chrX 11181109 11181168 -165792972 - L1MB7 LINE L1 -1782 4638 4580 2435 83 0 0 chrX 11181168 11181468 -165792672 + AluSg SINE Alu 1 300 -10 8745 220 47 54 chrX 11181468 11181902 -165792238 - L1MB7 LINE L1 -1840 4580 4144 6375 114 8 11 chrX 11181902 11183197 -165790943 - L1PA16 LINE L1 -3 6163 4872 8745 220 47 54 chrX 11183197 11183960 -165790180 - L1MB7 LINE L1 -2276 4144 3377 1337 103 0 0 chrX 11183960 11184134 -165790006 - AluSp SINE Alu -3 310 137 8745 220 47 54 chrX 11184134 11185138 -165789002 - L1MB7 LINE L1 -3043 3377 2339 333 0 0 0 chrX 11185138 11185175 -165788965 + (TG)n Simple_repeat Simple_repeat 2 38 0 227 296 80 77 chrX 11185257 11185418 -165788722 - L1M4 LINE L1 -1152 4994 4830 2331 89 0 3 chrX 11185418 11185709 -165788431 - AluSc SINE Alu -19 290 1 227 296 80 77 chrX 11185709 11185858 -165788282 - L1M4 LINE L1 -1316 4830 4683 225 154 0 0 chrX 11185930 11185969 -165788171 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 2253 119 0 0 chrX 11186440 11186734 -165787406 - AluSg SINE Alu -12 298 5 984 225 171 23 chrX 11187068 11187454 -165786686 + L1MEd LINE L1 561 1003 -5116 2167 110 0 36 chrX 11187470 11187779 -165786361 + AluSq SINE Alu 1 298 -15 419 271 76 48 chrX 11187779 11188092 -165786048 + L1MEd LINE L1 1085 1399 -4730 1537 244 100 37 chrX 11188143 11188458 -165785682 + L1MEd LINE L1 2267 2561 -3568 2415 78 0 0 chrX 11188458 11188754 -165785386 - AluY SINE Alu -15 296 1 1537 244 100 37 chrX 11188754 11189011 -165785129 + L1MEd LINE L1 2561 2895 -3234 2524 63 0 0 chrX 11189011 11189314 -165784826 + AluY SINE Alu 1 303 -8 1537 244 100 37 chrX 11189314 11189450 -165784690 + L1MEd LINE L1 2895 3021 -3108 1949 133 0 14 chrX 11189476 11189781 -165784359 - AluSx SINE Alu 0 301 1 414 0 0 0 chrX 11189828 11189874 -165784266 + (GA)n Simple_repeat Simple_repeat 1 46 0 237 241 19 142 chrX 11189889 11190051 -165784089 - LTR41 LTR ERVL -132 641 500 596 267 13 83 chrX 11190251 11190477 -165783663 - LTR41 LTR ERVL -547 248 5 1438 282 58 13 chrX 11190514 11190579 -165783561 + L1M4 LINE L1 4373 4434 -1712 1644 62 0 0 chrX 11190579 11190772 -165783368 - AluY SINE Alu -13 298 106 1438 282 58 13 chrX 11190772 11191255 -165782885 + L1M4 LINE L1 4434 4946 -1200 255 235 0 104 chrX 11191328 11191412 -165782728 + L1ME4a LINE L1 6017 6089 -32 2079 109 0 11 chrX 11191412 11191727 -165782413 + AluSx SINE Alu 1 312 0 255 235 0 104 chrX 11191727 11191756 -165782384 + L1ME4a LINE L1 6089 6119 -2 2259 96 0 0 chrX 11192229 11192521 -165781619 + AluSg SINE Alu 1 292 -18 2172 128 0 0 chrX 11192735 11193033 -165781107 - AluSx SINE Alu -14 298 1 584 277 80 28 chrX 11193388 11193601 -165780539 + MIR SINE MIR 2 225 -37 561 125 0 23 chrX 11194053 11194141 -165779999 + LTR54 LTR ERV1 1 86 -424 2513 68 10 0 chrX 11194487 11194795 -165779345 - AluSp SINE Alu -2 311 1 1558 184 77 21 chrX 11196223 11196626 -165777514 + LTR54 LTR ERV1 1 480 -30 551 295 44 18 chrX 11196628 11196836 -165777304 + MER57-int LTR ERV1 1913 2100 -4231 1060 195 55 61 chrX 11196882 11197233 -165776907 + MSTD LTR MaLR 1 396 0 329 188 58 0 chrX 11197483 11197552 -165776588 + MER57-int LTR ERV1 467 539 -6998 356 177 0 101 chrX 11197850 11197929 -165776211 + MER57-int LTR ERV1 755 825 -4046 2280 112 3 0 chrX 11197935 11198239 -165775901 + AluSq SINE Alu 1 305 -8 2393 88 7 0 chrX 11198312 11198619 -165775521 - AluSg SINE Alu -1 309 1 270 175 48 0 chrX 11198700 11198763 -165775377 + LTR57-int LTR ERVL 449 514 -4829 288 0 0 0 chrX 11198963 11198995 -165775145 + (A)n Simple_repeat Simple_repeat 1 32 0 2179 131 0 0 chrX 11199150 11199447 -165774693 - AluSq SINE Alu -16 297 1 2343 51 6 41 chrX 11199489 11199805 -165774335 + AluY SINE Alu 1 305 -6 258 269 0 0 chrX 11200266 11200318 -165773822 + MER57-int LTR ERV1 3363 3414 -4123 737 188 125 12 chrX 11200333 11200493 -165773647 + MER34C LTR ERV1 160 337 -248 2251 77 0 20 chrX 11200493 11200793 -165773347 - AluY SINE Alu -17 294 1 484 138 41 152 chrX 11200794 11200939 -165773201 + MER57-int LTR ERV1 1994 3552 -3985 766 259 126 40 chrX 11201088 11201795 -165772345 + LTR1 LTR ERV1 28 1009 -11 487 214 115 73 chrX 11201902 11202094 -165772046 + MER57-int LTR ERV1 2294 2493 -2378 2245 88 20 0 chrX 11202178 11202472 -165771668 + AluSg SINE Alu 1 300 -10 635 183 39 130 chrX 11202709 11203064 -165771076 + MER57-int LTR ERV1 1718 2040 -6080 679 250 24 38 chrX 11203069 11203126 -165771014 + MER57-int LTR ERV1 2344 2400 -2723 2135 109 0 0 chrX 11203126 11203420 -165770720 + AluSx SINE Alu 1 294 -18 679 250 24 38 chrX 11203420 11203574 -165770566 + MER57-int LTR ERV1 2400 2552 -2571 848 211 0 0 chrX 11203949 11204110 -165770030 - FRAM SINE Alu -14 162 2 387 255 121 34 chrX 11204513 11204662 -165769478 + MER5B DNA MER1_type 17 178 0 251 291 22 25 chrX 11204678 11204809 -165769331 - MER5B DNA MER1_type -2 176 56 2180 111 0 0 chrX 11205077 11205375 -165768765 - AluSg SINE Alu -12 298 1 2324 80 3 0 chrX 11205798 11206099 -165768041 - AluSq SINE Alu -11 302 1 22 0 0 0 chrX 11206500 11206522 -165767618 + AT_rich Low_complexity Low_complexity 1 22 0 2304 100 0 0 chrX 11206833 11207142 -165766998 - AluSx SINE Alu -3 309 1 2138 113 7 0 chrX 11207563 11207865 -165766275 - AluSq SINE Alu -9 304 1 1534 162 38 17 chrX 11207866 11207954 -165766186 + MER57-int LTR ERV1 3060 3145 -1791 1966 86 4 0 chrX 11207954 11208211 -165765929 + AluSx SINE Alu 42 299 -13 1534 162 38 17 chrX 11208211 11208450 -165765690 + MER57-int LTR ERV1 3145 3812 -1124 2284 71 7 3 chrX 11208545 11208841 -165765299 - AluSx SINE Alu -15 297 1 2538 226 49 19 chrX 11208852 11209583 -165764557 + MER57-int LTR ERV1 3411 4230 -641 2376 211 28 8 chrX 11209593 11210063 -165764077 + MER57-int LTR ERV1 6665 7143 -394 1894 142 71 136 chrX 11210066 11210312 -165763828 + LTR54 LTR ERV1 1 195 -315 2006 88 36 26 chrX 11210312 11210617 -165763523 + AluSq SINE Alu 1 308 -5 1894 142 71 136 chrX 11210617 11210907 -165763233 + LTR54 LTR ERV1 195 502 -8 1956 232 186 14 chrX 11211005 11211570 -165762570 + MLT2F LTR ERVL 2 663 0 501 277 0 15 chrX 11211573 11211710 -165762430 + ERVL-F LTR ERVL 4 138 -5626 886 265 31 5 chrX 11211908 11212131 -165762009 + ERVL-F LTR ERVL 386 614 -5150 4755 42 3 45 chrX 11212133 11212400 -165761740 - LTR10C LTR ERV1 -1 590 313 2135 104 0 3 chrX 11212400 11212699 -165761441 - AluY SINE Alu -13 298 1 4755 42 3 45 chrX 11212699 11213047 -165761093 - LTR10C LTR ERV1 -278 313 1 433 273 0 50 chrX 11213095 11213234 -165760906 + ERVL-F LTR ERVL 763 894 -4870 656 304 91 45 chrX 11213292 11213690 -165760450 + L1MEc LINE L1 1847 2262 -4134 383 243 133 110 chrX 11213756 11213929 -165760211 + MLT1H LTR MaLR 296 472 -77 1892 134 9 22 chrX 11213933 11214283 -165759857 - MER4A LTR ERV1 0 664 261 381 139 241 0 chrX 11214283 11214362 -165759778 - MER4A LTR ERV1 -566 98 1 2059 104 6 22 chrX 11214384 11214559 -165759581 - AluSp SINE Alu 0 313 144 5721 127 18 16 chrX 11214559 11215487 -165758653 - LTR5 LTR ERVK 0 969 40 2059 104 6 22 chrX 11215487 11215628 -165758512 - AluSp SINE Alu -169 144 2 225 273 45 55 chrX 11215708 11215771 -165758369 + MLT1H-int LTR MaLR 16 79 -1292 5509 58 1 0 chrX 11215771 11216430 -165757710 - PABL_A LTR ERV1 0 660 1 225 273 45 55 chrX 11216430 11216476 -165757664 + MLT1H-int LTR MaLR 79 124 -1247 378 293 34 27 chrX 11216570 11216717 -165757423 + MLT1H-int LTR MaLR 397 544 -827 2705 228 130 29 chrX 11216840 11217811 -165756329 + L1MEc LINE L1 37 908 -5307 2312 83 3 0 chrX 11217811 11218111 -165756029 + AluSp SINE Alu 1 301 -12 2705 228 130 29 chrX 11218111 11218619 -165755521 + L1MEc LINE L1 908 4929 -1286 2376 144 25 74 chrX 11218635 11218803 -165755337 - L1MC3 LINE L1 -7 7778 7603 1931 86 0 122 chrX 11218803 11219130 -165755010 - AluSq SINE Alu -16 287 1 2376 144 25 74 chrX 11219130 11219155 -165754985 - L1MC3 LINE L1 -182 7603 7578 2111 133 0 51 chrX 11219155 11219509 -165754631 + MER1B DNA MER1_type 2 337 0 2376 144 25 74 chrX 11219509 11219800 -165754340 - L1MC3 LINE L1 -207 7578 7317 272 170 0 0 chrX 11219867 11219914 -165754226 - L1MC3 LINE L1 -475 7310 7264 469 284 85 0 chrX 11220049 11220190 -165753950 - MIR SINE MIR -22 240 88 2045 209 17 41 chrX 11220746 11221192 -165752948 - L1MB8 LINE L1 -6 6172 5740 2005 95 0 11 chrX 11221192 11221466 -165752674 - AluSx SINE Alu -41 271 1 2045 209 17 41 chrX 11221466 11221554 -165752586 - L1MB8 LINE L1 -438 5740 5651 2073 130 0 0 chrX 11221918 11222226 -165751914 - AluSq SINE Alu -5 308 1 442 259 32 50 chrX 11222228 11222506 -165751634 - L1MB8 LINE L1 -814 5332 5060 3257 183 79 5 chrX 11222507 11223115 -165751025 - MER82 DNA MER2_type 0 653 1 912 272 54 48 chrX 11223203 11223377 -165750763 - L1MB8 LINE L1 -1228 4918 4747 1937 144 0 3 chrX 11223377 11223669 -165750471 - AluJb SINE Alu -18 294 4 912 272 54 48 chrX 11223669 11223935 -165750205 - L1MB8 LINE L1 -1399 4747 4475 498 321 53 42 chrX 11224144 11224499 -165749641 - L1MEd LINE L1 -5327 792 434 668 247 21 21 chrX 11224680 11224866 -165749274 - L1MEd LINE L1 -5920 199 14 850 141 0 0 chrX 11225077 11225198 -165748942 - FLAM_A SINE Alu -12 121 1 198 0 0 0 chrX 11225205 11225227 -165748913 + (TTG)n Simple_repeat Simple_repeat 3 24 0 1926 128 17 7 chrX 11225349 11225647 -165748493 - AluSx SINE Alu -11 301 1 302 18 73 0 chrX 11225782 11225837 -165748303 + (TA)n Simple_repeat Simple_repeat 2 60 0 2297 58 0 10 chrX 11225837 11226130 -165748010 - AluY SINE Alu -21 290 1 1483 236 99 22 chrX 11226242 11226657 -165747483 - L1ME3A LINE L1 -39 6131 5685 442 283 135 60 chrX 11226653 11226842 -165747298 - L1ME1 LINE L1 -336 5830 5657 * 2505 95 52 3 chrX 11226842 11227189 -165746951 - THE1B LTR MaLR 0 364 1 442 283 135 60 chrX 11227189 11227264 -165746876 - L1ME1 LINE L1 -509 5657 5589 180 0 0 0 chrX 11227264 11227284 -165746856 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 442 283 135 60 chrX 11227284 11227552 -165746588 - L1ME1 LINE L1 -577 5589 5260 2193 106 3 0 chrX 11227565 11227867 -165746273 + AluSg SINE Alu 1 303 -7 1845 156 7 7 chrX 11227945 11228253 -165745887 + MER49 LTR ERV1 5 312 -611 591 89 13 0 chrX 11228254 11228333 -165745807 + AluSp SINE Alu 2 81 -231 2408 53 7 0 chrX 11228334 11228636 -165745504 - AluY SINE Alu -7 304 1 1741 65 4 9 chrX 11228636 11228865 -165745275 + AluSp SINE Alu 67 294 -19 935 152 33 65 chrX 11228866 11229050 -165745090 + MER49 LTR ERV1 301 478 -445 680 120 93 42 chrX 11229037 11229227 -165744913 + MER49 LTR ERV1 587 890 -33 * 2047 127 0 16 chrX 11229230 11229585 -165744555 + AluSx SINE Alu 3 352 0 320 241 0 0 chrX 11229782 11229861 -165744279 - LTR58 LTR ERV1 -230 449 371 3889 143 23 62 chrX 11230193 11230773 -165743367 + MER50 LTR ERV1 1 602 -132 1784 157 4 0 chrX 11230773 11231080 -165743060 - AluSx SINE Alu 0 308 1 3889 143 23 62 chrX 11231080 11231091 -165743049 + MER50 LTR ERV1 602 612 -122 2649 13 0 0 chrX 11231091 11231391 -165742749 - AluY SINE Alu -11 300 1 3889 143 23 62 chrX 11231391 11231537 -165742603 + MER50 LTR ERV1 612 711 -23 275 318 31 75 chrX 11231545 11231607 -165742533 - L1MDa LINE L1 -1905 4635 4572 1085 169 0 0 chrX 11231607 11231796 -165742344 + MER53 DNA DNA 1 189 0 275 318 31 75 chrX 11231796 11231868 -165742272 - L1MDa LINE L1 -1968 4572 4498 366 226 132 31 chrX 11231868 11231915 -165742225 - MER5B DNA MER1_type -3 175 134 221 0 35 0 chrX 11231915 11231944 -165742196 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 366 226 132 31 chrX 11231944 11232055 -165742085 - MER5B DNA MER1_type -44 134 1 275 318 31 75 chrX 11232055 11232240 -165741900 - L1MDa LINE L1 -2042 4498 4329 1724 108 69 86 chrX 11232271 11232451 -165741689 + LTR23 LTR ERV1 1 182 -255 1842 143 7 3 chrX 11232451 11232751 -165741389 - AluJb SINE Alu -11 301 1 1724 108 69 86 chrX 11232751 11232870 -165741270 + LTR23 LTR ERV1 182 296 -141 2321 45 7 16 chrX 11232870 11233178 -165740962 + AluY SINE Alu 1 305 -6 1724 108 69 86 chrX 11233178 11233237 -165740903 + LTR23 LTR ERV1 296 354 -83 947 123 20 113 chrX 11233238 11233441 -165740699 + MER4E LTR ERV1 1 184 -595 2205 72 3 7 chrX 11233522 11233834 -165740306 + AluY SINE Alu 1 311 0 3771 136 19 28 chrX 11234815 11235432 -165738708 + MER4E LTR ERV1 168 779 0 411 159 29 0 chrX 11235432 11235495 -165738645 + LTR23 LTR ERV1 352 416 -21 926 128 0 8 chrX 11235497 11235630 -165738510 + FLAM_C SINE Alu 2 133 0 296 263 47 96 chrX 11235727 11235950 -165738190 - L1MDa LINE L1 -2358 4182 3966 506 198 30 0 chrX 11235950 11236051 -165738089 + MER5A DNA MER1_type 9 112 -77 204 187 286 22 chrX 11235985 11236076 -165738064 - MER5A DNA MER1_type -32 157 43 * 1611 290 117 59 chrX 11236234 11236446 -165737694 - L1MDa LINE L1 -2697 3843 3645 2093 90 3 60 chrX 11236446 11236778 -165737362 - AluSp SINE Alu 0 313 1 1611 290 117 59 chrX 11236778 11236885 -165737255 - L1MDa LINE L1 -2895 3645 3546 1892 51 0 4 chrX 11236885 11237121 -165737019 - AluY SINE Alu -76 235 1 1611 290 117 59 chrX 11237121 11237300 -165736840 - L1MDa LINE L1 -2994 3546 3379 2255 88 3 0 chrX 11237300 11237606 -165736534 - AluY SINE Alu -4 307 1 1611 290 117 59 chrX 11237606 11237945 -165736195 - L1MDa LINE L1 -3161 3379 3061 2118 111 0 0 chrX 11237945 11238242 -165735898 + AluSx SINE Alu 1 297 -15 1611 290 117 59 chrX 11238242 11238801 -165735339 - L1MDa LINE L1 -3479 3061 2351 2183 124 0 0 chrX 11238906 11239212 -165734928 - AluSx SINE Alu -6 306 1 2559 92 6 3 chrX 11239292 11239629 -165734511 + THE1B LTR MaLR 27 364 0 620 229 126 17 chrX 11240734 11240909 -165733231 - MIR SINE MIR -44 218 25 500 252 8 0 chrX 11242157 11242288 -165731852 + MER53 DNA DNA 23 154 -35 1338 121 5 5 chrX 11242288 11242487 -165731653 - AluSg/x SINE Alu -20 292 94 313 133 0 0 chrX 11242489 11242534 -165731606 - Alu SINE Alu -254 45 1 295 145 0 81 chrX 11242533 11242557 -165731583 - MER53 DNA DNA -132 57 33 * 2280 94 0 7 chrX 11242557 11242866 -165731274 - AluSx SINE Alu -5 307 1 295 145 0 81 chrX 11242866 11242903 -165731237 - MER53 DNA DNA -156 33 1 205 343 151 17 chrX 11242905 11243077 -165731063 + MIR SINE MIR 25 219 -43 591 303 71 17 chrX 11243092 11243498 -165730642 + LTR16A1 LTR ERVL 1 428 -29 239 85 17 51 chrX 11244088 11244147 -165729993 + (TTCCC)n Simple_repeat Simple_repeat 1 57 0 1859 124 4 4 chrX 11244151 11244426 -165729714 - AluSx SINE Alu -37 275 1 289 302 47 39 chrX 11244426 11244555 -165729585 + MIR SINE MIR 61 190 -72 324 128 0 0 chrX 11244751 11244798 -165729342 - FLAM SINE Alu -1 132 86 1297 182 0 0 chrX 11244798 11245018 -165729122 - AluJo SINE Alu -92 220 1 791 157 90 30 chrX 11245698 11245853 -165728287 - L1MA9 LINE L1 -327 5985 5818 2156 93 0 3 chrX 11245853 11246142 -165727998 - AluSx SINE Alu -13 299 12 810 146 0 0 chrX 11246302 11246432 -165727708 - AluJb SINE Alu -45 267 138 531 330 98 12 chrX 11246442 11246769 -165727371 + L2 LINE L2 2952 3306 -7 399 264 24 24 chrX 11246776 11246901 -165727239 - MIR SINE MIR -131 131 7 1790 151 0 26 chrX 11247637 11247948 -165726192 - AluJb SINE Alu -9 303 1 663 354 26 18 chrX 11247954 11248446 -165725694 - L1M4 LINE L1 -3399 2747 2252 2211 101 0 0 chrX 11248743 11249041 -165725099 - AluSx SINE Alu -14 298 1 2120 89 0 3 chrX 11249198 11249490 -165724650 + AluSg SINE Alu 1 291 -19 193 71 0 48 chrX 11249490 11249532 -165724608 + (TA)n Simple_repeat Simple_repeat 2 41 0 227 67 0 107 chrX 11249634 11249783 -165724357 + (TA)n Simple_repeat Simple_repeat 1 133 0 346 56 11 101 chrX 11249796 11249974 -165724166 + (TA)n Simple_repeat Simple_repeat 2 163 0 422 183 0 0 chrX 11250032 11250103 -165724037 + AluJ/FLAM SINE Alu 2 72 -240 632 239 80 42 chrX 11250297 11250561 -165723579 + MLT1L LTR MaLR 3 276 -339 242 224 0 45 chrX 11250575 11250642 -165723498 + GA-rich Low_complexity Low_complexity 1 64 0 909 265 87 10 chrX 11250646 11250944 -165723196 + MLT1L LTR MaLR 287 607 -8 1572 149 3 65 chrX 11250999 11251307 -165722833 - AluJo SINE Alu -23 289 1 346 263 35 26 chrX 11251708 11251822 -165722318 - MIR SINE MIR -7 255 141 295 175 113 38 chrX 11252475 11252555 -165721585 - MIR SINE MIR -109 153 68 427 346 48 24 chrX 11252716 11252924 -165721216 - MIR SINE MIR -25 237 25 300 230 58 24 chrX 11253453 11253577 -165720563 + MIR SINE MIR 36 164 -66 244 331 58 19 chrX 11254697 11254851 -165719289 + L2 LINE L2 2903 3062 -251 569 288 197 25 chrX 11256666 11256755 -165717385 + LTR67 LTR ERVL 33 105 -452 1785 170 28 0 chrX 11256755 11257044 -165717096 - AluJb SINE Alu -15 297 1 569 288 197 25 chrX 11257044 11257395 -165716745 + LTR67 LTR ERVL 105 549 -8 237 224 26 53 chrX 11258852 11258928 -165715212 - MIR SINE MIR -122 140 67 825 200 42 47 chrX 11264916 11265131 -165709009 + MER20 DNA MER1_type 3 216 -3 201 214 0 39 chrX 11265670 11265736 -165708404 + MIR SINE MIR 11 73 -135 403 209 174 0 chrX 11268858 11268973 -165705167 - MER112 DNA MER1_type -8 252 118 180 0 0 0 chrX 11269077 11269097 -165705043 + (T)n Simple_repeat Simple_repeat 1 20 0 2377 92 0 0 chrX 11269916 11270210 -165703930 - AluSg SINE Alu -16 294 1 1975 138 21 3 chrX 11270213 11270502 -165703638 - AluJb SINE Alu -14 298 5 2450 88 3 0 chrX 11270549 11270856 -165703284 + AluSp SINE Alu 1 308 -5 933 120 0 47 chrX 11270865 11271015 -165703125 + FLAM_C SINE Alu 1 143 0 254 248 109 20 chrX 11271211 11271312 -165702828 - L1ME4a LINE L1 -208 5913 5804 2296 79 0 14 chrX 11273252 11273544 -165700596 - AluSg SINE Alu -22 288 1 1752 190 40 3 chrX 11276513 11276865 -165697275 + MLT1A1 LTR MaLR 1 365 0 300 301 0 12 chrX 11277228 11277311 -165696829 + L1ME3A LINE L1 5908 5989 -181 667 318 47 50 chrX 11277396 11277911 -165696229 + MER34 LTR ERV1 1 513 -29 21 0 0 0 chrX 11278179 11278200 -165695940 + AT_rich Low_complexity Low_complexity 1 21 0 2093 123 20 10 chrX 11278267 11278559 -165695581 + AluJb SINE Alu 1 295 -17 2306 97 0 13 chrX 11279080 11279242 -165694898 - AluSx SINE Alu -17 295 137 2327 110 3 0 chrX 11279242 11279542 -165694598 - AluSp SINE Alu -12 301 1 2306 97 0 13 chrX 11279542 11279678 -165694462 - AluSx SINE Alu -175 137 1 433 296 131 28 chrX 11279875 11280051 -165694089 - MIR3 SINE MIR -7 201 8 1605 134 58 0 chrX 11280293 11280554 -165693586 - Tigger3(Golem) DNA MER2_type -1 3028 2753 1095 133 0 61 chrX 11280554 11280735 -165693405 + AluJo SINE Alu 1 170 -142 1872 152 55 0 chrX 11281318 11281440 -165692700 + AluJo SINE Alu 1 115 -197 237 65 0 0 chrX 11281440 11281471 -165692669 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1872 152 55 0 chrX 11281471 11281638 -165692502 + AluJo SINE Alu 115 306 -6 1397 247 101 54 chrX 11281757 11282774 -165691366 - L2 LINE L2 0 3313 2247 2183 100 3 7 chrX 11282995 11283294 -165690846 + AluSx SINE Alu 2 299 -13 305 51 0 0 chrX 11283744 11283783 -165690357 - MADE1 DNA Mariner -41 39 1 1368 183 79 12 chrX 11284409 11284737 -165689403 + L1MB7 LINE L1 5835 6184 0 2449 71 14 0 chrX 11284939 11285235 -165688905 + AluSp SINE Alu 1 300 -13 2122 119 3 7 chrX 11285954 11286257 -165687883 - AluSx SINE Alu -10 302 1 1165 92 0 7 chrX 11286689 11286842 -165687298 + AluJb SINE Alu 84 235 -77 468 286 0 8 chrX 11287290 11287423 -165686717 - MER94 DNA DNA 0 134 3 23 0 0 0 chrX 11287640 11287663 -165686477 + AT_rich Low_complexity Low_complexity 1 23 0 2523 83 0 0 chrX 11288028 11288340 -165685800 - AluSp SINE Alu -1 312 1 432 222 0 0 chrX 11288598 11288688 -165685452 + L1ME LINE L1 5689 5778 -343 786 244 48 18 chrX 11288695 11288924 -165685216 + MIR SINE MIR 3 238 -24 842 83 30 0 chrX 11288961 11289093 -165685047 + L1MB2 LINE L1 5995 6130 -41 2429 91 0 0 chrX 11289093 11289390 -165684750 + AluSx SINE Alu 1 297 -15 2566 56 0 0 chrX 11289412 11289715 -165684425 + AluY SINE Alu 1 303 -8 386 211 0 0 chrX 11290639 11290710 -165683430 - tRNA-Val-GTG tRNA tRNA -3 73 3 28 0 0 0 chrX 11290972 11291000 -165683140 + GC_rich Low_complexity Low_complexity 1 28 0 554 188 45 0 chrX 11291395 11291507 -165682633 - MER45A DNA AcHobo -5 173 57 386 290 99 0 chrX 11291884 11292015 -165682125 + MIR3 SINE MIR 43 186 -22 2309 96 7 7 chrX 11292765 11293068 -165681072 - AluSx SINE Alu -9 303 1 963 256 188 10 chrX 11293070 11293464 -165680676 + L2 LINE L2 1013 1476 -1838 696 137 144 52 chrX 11293476 11293629 -165680511 - MER20 DNA MER1_type -31 188 22 408 226 32 0 chrX 11293639 11293732 -165680408 + MER20 DNA MER1_type 43 138 -81 878 140 13 25 chrX 11293732 11293878 -165680262 + AluJb SINE Alu 157 302 -10 2055 128 0 19 chrX 11293878 11294191 -165679949 + AluJb SINE Alu 1 307 -5 2833 284 98 26 chrX 11294202 11294810 -165679330 + L2 LINE L2 1714 2277 -1036 2003 141 7 14 chrX 11294810 11295107 -165679033 - AluSx SINE Alu -17 295 1 2833 284 98 26 chrX 11295107 11295538 -165678602 + L2 LINE L2 2277 2675 -638 1995 156 7 3 chrX 11295538 11295839 -165678301 + AluSx SINE Alu 1 302 -10 2833 284 98 26 chrX 11295839 11295934 -165678206 + L2 LINE L2 2675 2762 -551 252 0 0 0 chrX 11295934 11295962 -165678178 + (CTG)n Simple_repeat Simple_repeat 2 29 0 2833 284 98 26 chrX 11295962 11296147 -165677993 + L2 LINE L2 2762 3133 -180 2296 92 0 38 chrX 11296150 11296349 -165677791 - AluSc SINE Alu -4 305 121 4394 33 2 0 chrX 11296349 11296889 -165677251 - L1PA4 LINE L1 -3 6152 5612 2296 92 0 38 chrX 11296889 11297006 -165677134 - AluSc SINE Alu -188 121 1 493 210 38 57 chrX 11297021 11297178 -165676962 + L2 LINE L2 3151 3304 -9 255 264 34 95 chrX 11297199 11297347 -165676793 + MLT1K LTR MaLR 223 361 -227 850 284 97 15 chrX 11297386 11297727 -165676413 + MLT1I LTR MaLR 19 387 -22 1328 305 95 9 chrX 11297758 11298223 -165675917 - LTR67 LTR ERVL -51 506 2 354 265 86 0 chrX 11298305 11298422 -165675718 + MLT1K LTR MaLR 454 580 -8 2276 101 25 30 chrX 11298570 11298936 -165675204 - THE1B LTR MaLR 0 364 1 768 231 91 12 chrX 11299138 11299380 -165674760 - MIR SINE MIR 0 262 2 2259 121 0 6 chrX 11300342 11300655 -165673485 - AluSx SINE Alu 0 312 2 2633 58 0 0 chrX 11301134 11301442 -165672698 + AluY SINE Alu 2 309 -2 314 335 35 41 chrX 11302230 11302427 -165671713 - MLT1K LTR MaLR -355 233 38 239 111 167 19 chrX 11302477 11302531 -165671609 - MIR SINE MIR 0 262 201 739 265 57 91 chrX 11302533 11303062 -165671078 - MLT1J LTR MaLR 0 511 1 734 250 12 12 chrX 11303062 11303237 -165670903 - MIR SINE MIR -59 203 29 2441 104 0 0 chrX 11303409 11303718 -165670422 - AluSx SINE Alu -3 309 1 433 274 15 30 chrX 11303718 11303853 -165670287 - MIR SINE MIR -114 148 16 2181 139 74 72 chrX 11304462 11304935 -165669205 - MER4B LTR ERV1 -136 474 1 1729 112 82 63 chrX 11304954 11305257 -165668883 + AluJb SINE Alu 1 309 -3 361 212 62 62 chrX 11305275 11305421 -165668719 - MER5A DNA MER1_type 0 189 44 * 688 225 6 38 chrX 11305293 11305453 -165668687 + MER5A DNA MER1_type 35 189 0 676 195 19 32 chrX 11305787 11305941 -165668199 + L2 LINE L2 3158 3309 -4 2258 92 6 48 chrX 11306088 11306404 -165667736 - AluSx SINE Alu -9 303 1 308 222 162 30 chrX 11307024 11307123 -165667017 + MIR3 SINE MIR 70 181 -27 395 351 50 29 chrX 11307626 11308002 -165666138 + L2 LINE L2 2007 2390 -924 604 242 8 8 chrX 11308061 11308181 -165665959 + L2 LINE L2 3151 3270 -2 481 334 82 23 chrX 11308172 11308477 -165665663 + L2 LINE L2 2408 2730 -584 * 677 249 35 6 chrX 11308568 11308741 -165665399 + MER104 DNA Tc2 1 178 -2 * 714 251 55 55 chrX 11308741 11308988 -165665152 + MER102b DNA MER1_type 95 341 0 278 59 0 0 chrX 11309240 11309274 -165664866 - HSMAR1 DNA Mariner -1253 34 1 2227 110 0 3 chrX 11309289 11309597 -165664543 - AluSq SINE Alu -6 307 1 2616 203 81 39 chrX 11309597 11310198 -165663942 - L1ME1 LINE L1 -56 6110 5477 1574 182 56 0 chrX 11310198 11310467 -165663673 + AluJb SINE Alu 1 284 -28 2616 203 81 39 chrX 11310467 11310535 -165663605 - L1ME1 LINE L1 -689 5477 5413 264 243 28 93 chrX 11310621 11310666 -165663474 - L1ME LINE L1 -5923 147 101 2297 228 58 31 chrX 11310666 11311240 -165662900 - MLT1E LTR MaLR -4 589 1 264 243 28 93 chrX 11311240 11311301 -165662839 - L1ME LINE L1 -5969 101 48 1796 155 10 10 chrX 11311885 11312182 -165661958 - AluJo SINE Alu -15 297 1 298 223 96 25 chrX 11312188 11312345 -165661795 - Charlie7 DNA MER1_type -12 2600 2433 * 313 220 40 40 chrX 11312332 11312432 -165661708 - Charlie7 DNA MER1_type -2511 101 2 459 208 69 8 chrX 11312884 11313014 -165661126 - LTR16C LTR ERVL 0 491 354 276 318 23 16 chrX 11313184 11313313 -165660827 + L2 LINE L2 2961 3090 -182 208 309 0 0 chrX 11313373 11313428 -165660712 - MIR SINE MIR -12 250 196 751 247 128 17 chrX 11313674 11313909 -165660231 + MIR SINE MIR 2 262 0 1984 132 24 0 chrX 11314236 11314524 -165659616 + AluSx SINE Alu 1 295 -17 208 256 0 64 chrX 11314648 11314726 -165659414 - L2 LINE L2 -182 3090 3018 408 20 0 0 chrX 11315970 11316019 -165658121 + (TG)n Simple_repeat Simple_repeat 1 49 0 437 293 99 26 chrX 11316730 11316921 -165657219 + MIR SINE MIR 55 259 -3 284 273 57 0 chrX 11317179 11317267 -165656873 - MIR SINE MIR -72 190 98 529 178 153 17 chrX 11317386 11317504 -165656636 - MER103 DNA DNA -19 147 14 27 29 0 0 chrX 11319023 11319057 -165655083 + AT_rich Low_complexity Low_complexity 1 34 0 254 297 27 0 chrX 11319288 11319362 -165654778 - L2 LINE L2 0 3272 3197 2029 145 0 7 chrX 11319651 11319955 -165654185 - AluJb SINE Alu -10 302 1 599 236 43 7 chrX 11320439 11320579 -165653561 + MER5B DNA MER1_type 5 149 -29 430 224 61 0 chrX 11320565 11320663 -165653477 - MER5B DNA MER1_type -72 106 3 * 214 313 232 0 chrX 11320667 11320766 -165653374 + MIR3 SINE MIR 82 203 -5 202 127 0 73 chrX 11320789 11320844 -165653296 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 585 265 8 96 chrX 11320964 11321161 -165652979 + L3 LINE CR1 518 688 -889 2074 134 0 3 chrX 11321161 11321460 -165652680 + AluJb SINE Alu 1 298 -14 585 265 8 96 chrX 11321460 11321522 -165652618 + L3 LINE CR1 688 754 -823 728 135 8 2 chrX 11321715 11321967 -165652173 + AluJ SINE Alu 1 302 -10 2186 116 0 3 chrX 11322192 11322495 -165651645 + AluSx SINE Alu 1 302 -10 2586 68 0 0 chrX 11322548 11322856 -165651284 - AluSg SINE Alu -2 308 1 4721 162 81 11 chrX 11324827 11325221 -165648919 - L1MB5 LINE L1 -8 6166 5801 2454 78 7 0 chrX 11325221 11325527 -165648613 - AluSx SINE Alu -4 308 1 4721 162 81 11 chrX 11325527 11326196 -165647944 - L1MB5 LINE L1 -373 5801 5028 3311 95 18 31 chrX 11326195 11326710 -165647430 + L1PB4 LINE L1 5282 5789 -367 * 231 152 0 0 chrX 11326729 11326775 -165647365 + L1MC4 LINE L1 6658 6703 -1339 228 216 0 0 chrX 11326778 11326829 -165647311 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 2580 99 34 8 chrX 11326830 11327184 -165646956 + L1PB4 LINE L1 5782 6144 -12 7349 188 52 21 chrX 11327201 11327484 -165646656 - L1MB5 LINE L1 -1107 5039 4766 2361 84 3 3 chrX 11327484 11327781 -165646359 - AluSg SINE Alu -13 297 1 7349 188 52 21 chrX 11327781 11329154 -165644986 - L1MB5 LINE L1 -1380 4766 3331 251 231 0 0 chrX 11329179 11329231 -165644909 - MER66A LTR ERV1 -140 338 287 527 248 98 39 chrX 11329392 11329828 -165644312 - L1ME4a LINE L1 -43 6078 5586 397 327 42 65 chrX 11329829 11329992 -165644148 - MIR SINE MIR 0 262 106 2337 97 0 3 chrX 11329992 11330300 -165643840 - AluSg SINE Alu -3 307 1 397 327 42 65 chrX 11330300 11330399 -165643741 - MIR SINE MIR -156 106 6 326 239 150 9 chrX 11330513 11330649 -165643491 - MIR SINE MIR -63 145 36 892 158 38 32 chrX 11330821 11330979 -165643161 + FRAM SINE Alu 1 159 -7 2220 116 0 7 chrX 11330979 11331273 -165642867 + AluSx SINE Alu 1 292 -20 406 228 152 35 chrX 11331376 11331547 -165642593 - MIR SINE MIR -70 192 2 2492 63 0 0 chrX 11331981 11332284 -165641856 + AluY SINE Alu 2 304 -7 186 133 0 0 chrX 11332781 11332811 -165641329 + (T)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chrX 11332817 11332838 -165641302 + AT_rich Low_complexity Low_complexity 1 21 0 229 164 55 0 chrX 11332880 11332935 -165641205 - L1MC4 LINE L1 -6 8036 7979 617 236 31 15 chrX 11332943 11333138 -165641002 - L1MC4 LINE L1 -156 7886 7689 576 296 185 6 chrX 11333138 11333631 -165640509 + L2 LINE L2 1679 2259 -1055 1840 135 3 60 chrX 11334018 11334337 -165639803 + AluJo SINE Alu 1 301 -11 2229 128 0 0 chrX 11335069 11335375 -165638765 - AluJb SINE Alu -6 306 1 1818 198 112 21 chrX 11335480 11335955 -165638185 + L1MC4 LINE L1 7120 7637 -405 180 0 0 0 chrX 11335964 11335984 -165638156 + (GA)n Simple_repeat Simple_repeat 1 20 0 2416 85 0 25 chrX 11336038 11336355 -165637785 + AluSx SINE Alu 1 309 -3 302 368 42 0 chrX 11336486 11336698 -165637442 + L2 LINE L2 651 871 -2443 463 141 0 0 chrX 11336768 11336839 -165637301 - L1PB4 LINE L1 -8 6148 6078 370 336 7 15 chrX 11337252 11337389 -165636751 - MIR3 SINE MIR -14 194 59 1060 192 105 18 chrX 11338341 11338617 -165635523 - L2 LINE L2 -1 3312 3013 2234 94 0 0 chrX 11338717 11339003 -165635137 - AluSx SINE Alu -16 296 11 291 247 62 0 chrX 11339120 11339201 -165634939 - MIR SINE MIR -12 250 165 219 36 0 0 chrX 11339254 11339282 -165634858 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 394 238 127 28 chrX 11339301 11339482 -165634658 - L2 LINE L2 -42 3271 3073 2195 105 0 26 chrX 11339512 11339816 -165634324 - AluSx SINE Alu -16 296 1 500 284 62 82 chrX 11339854 11340097 -165634043 + MIR SINE MIR 5 242 -20 195 162 0 0 chrX 11340339 11340376 -165633764 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 1201 187 189 6 chrX 11340904 11341434 -165632706 - LTR50 LTR ERVL -3 792 3 2082 97 7 0 chrX 11341802 11342124 -165632016 + AluSg SINE Alu 1 324 0 254 260 200 20 chrX 11342197 11342297 -165631843 + MIR SINE MIR 36 153 -109 2154 125 0 10 chrX 11342387 11342690 -165631450 - AluSx SINE Alu -12 300 1 274 275 38 0 chrX 11342719 11342799 -165631341 - MIR3 SINE MIR -17 191 109 374 240 0 72 chrX 11342803 11342928 -165631212 + MIR SINE MIR 6 121 -141 3278 111 75 28 chrX 11343180 11343710 -165630430 - MER21A LTR ERV1 0 931 377 707 130 298 0 chrX 11343716 11343877 -165630263 - MER21A LTR ERV1 -667 264 56 366 42 0 0 chrX 11343885 11343933 -165630207 + (TC)n Simple_repeat Simple_repeat 2 49 0 2467 104 39 31 chrX 11343945 11344302 -165629838 - THE1B LTR MaLR 0 364 5 306 260 27 67 chrX 11344833 11344983 -165629157 - MIR SINE MIR -12 250 107 255 233 44 56 chrX 11345435 11345525 -165628615 - L1ME LINE L1 -482 5688 5600 799 258 0 0 chrX 11345553 11345712 -165628428 - MIR SINE MIR -98 164 6 2327 110 0 0 chrX 11346442 11346743 -165627397 - AluSq SINE Alu -12 301 1 1924 101 24 21 chrX 11347327 11347615 -165626525 - L1MB8 LINE L1 -11 6167 5879 1357 101 0 3 chrX 11347615 11347843 -165626297 - AluSc SINE Alu -11 298 1 2884 120 19 30 chrX 11347845 11348313 -165625827 - L1MB8 LINE L1 -298 5886 5424 2243 116 0 7 chrX 11348650 11348951 -165625189 + AluSq SINE Alu 1 299 -14 1463 239 65 42 chrX 11348979 11349426 -165624714 - LTR16A1 LTR ERVL 0 457 1 30359 55 3 1 chrX 11349860 11355988 -165618152 - L1PA5 LINE L1 -2 6152 11 2166 115 0 3 chrX 11356142 11356437 -165617703 - AluSg SINE Alu -16 294 1 22 0 0 0 chrX 11356524 11356546 -165617594 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 11356645 11356667 -165617473 + (T)n Simple_repeat Simple_repeat 1 22 0 282 288 34 55 chrX 11357020 11357166 -165616974 - MER5B DNA MER1_type -9 169 27 1575 189 95 78 chrX 11357223 11357506 -165616634 - L1ME3A LINE L1 -5 6165 5867 1947 128 19 44 chrX 11357506 11357826 -165616314 - AluSx SINE Alu 0 312 1 1575 189 95 78 chrX 11357826 11358056 -165616084 - L1ME3A LINE L1 -303 5867 5643 1078 267 49 72 chrX 11358066 11358305 -165615835 - MLT1H LTR MaLR -7 542 299 2113 125 35 0 chrX 11358305 11358594 -165615546 + AluSx SINE Alu 1 299 -13 1078 267 49 72 chrX 11358594 11358909 -165615231 - MLT1H LTR MaLR -250 299 1 916 246 41 92 chrX 11358911 11359169 -165614971 - L1ME3A LINE L1 -523 5641 5408 2411 94 3 0 chrX 11359169 11359477 -165614663 - AluSx SINE Alu -3 309 1 916 246 41 92 chrX 11359477 11359609 -165614531 - L1ME3A LINE L1 -756 5408 5271 2160 105 3 10 chrX 11359613 11359919 -165614221 - AluSx SINE Alu -8 304 1 247 294 24 8 chrX 11360368 11360494 -165613646 - L1ME3A LINE L1 -1729 4417 4290 649 295 58 0 chrX 11360523 11360713 -165613427 - MIR SINE MIR -11 251 51 37 23 0 0 chrX 11360728 11360772 -165613368 + AT_rich Low_complexity Low_complexity 1 44 0 359 69 75 52 chrX 11360777 11360951 -165613189 + (TA)n Simple_repeat Simple_repeat 1 178 0 1568 138 24 12 chrX 11360951 11361197 -165612943 - AluJb SINE Alu -21 291 43 517 295 122 25 chrX 11361217 11361570 -165612570 - L1ME3A LINE L1 -1871 4275 3889 711 255 162 10 chrX 11362511 11362715 -165611425 + MIR SINE MIR 2 236 -26 1518 104 24 9 chrX 11363206 11363417 -165610723 - AluJb SINE Alu -13 299 86 1539 269 72 35 chrX 11364242 11364754 -165609386 - MLT1H LTR MaLR -16 533 3 199 246 29 58 chrX 11365386 11365455 -165608685 + L2 LINE L2 3239 3305 -8 189 0 0 0 chrX 11365476 11365497 -165608643 + (CCCCCA)n Simple_repeat Simple_repeat 2 22 0 11267 190 55 34 chrX 11365891 11367226 -165606914 - L1MB7 LINE L1 -16 6666 5360 2260 119 0 0 chrX 11367226 11367529 -165606611 + AluSx SINE Alu 1 303 -9 11267 190 55 34 chrX 11367529 11368092 -165606048 - L1MB7 LINE L1 -1322 5360 4810 264 59 0 0 chrX 11368092 11368126 -165606014 + (TG)n Simple_repeat Simple_repeat 1 34 0 11267 190 55 34 chrX 11368126 11369908 -165604232 - L1MB7 LINE L1 -1872 4810 708 440 268 37 12 chrX 11369915 11370001 -165604139 - L1MB7 LINE L1 -6374 168 86 180 0 0 0 chrX 11370001 11370021 -165604119 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 440 268 37 12 chrX 11370021 11370098 -165604042 - L1MB7 LINE L1 -6456 86 1 1915 161 3 13 chrX 11370319 11370629 -165603511 - AluJb SINE Alu -5 307 1 237 148 0 37 chrX 11370753 11370807 -165603333 + L1MCc LINE L1 1417 1468 -4955 1947 176 21 20 chrX 11370946 11371013 -165603127 - L1MB7 LINE L1 0 6183 6118 2219 93 0 0 chrX 11371013 11371293 -165602847 + AluSx SINE Alu 1 280 -32 1947 176 21 20 chrX 11371293 11371666 -165602474 - L1MB7 LINE L1 -65 6118 5768 2396 89 0 0 chrX 11371916 11372208 -165601932 - AluSx SINE Alu -20 292 1 847 137 0 0 chrX 11372656 11372773 -165601367 + FLAM_C SINE Alu 1 117 -26 730 168 0 0 chrX 11372797 11372910 -165601230 - MER33 DNA MER1_type -211 113 1 252 229 0 49 chrX 11373148 11373209 -165600931 - L2 LINE L2 0 3272 3215 229 283 174 0 chrX 11374633 11374725 -165599415 - MIR3 SINE MIR -1 207 100 25 0 0 0 chrX 11375021 11375046 -165599094 + AT_rich Low_complexity Low_complexity 1 25 0 2264 93 0 3 chrX 11375726 11376015 -165598125 - AluSx SINE Alu -24 288 1 378 290 32 24 chrX 11376183 11376307 -165597833 - L2 LINE L2 -11 3261 3137 1070 161 0 23 chrX 11376330 11376504 -165597636 - AluJb SINE Alu -6 306 137 2231 122 0 3 chrX 11376506 11376809 -165597331 - AluSx SINE Alu -10 302 1 702 249 49 16 chrX 11376837 11377022 -165597118 + MIR SINE MIR 49 239 -23 3251 63 2 0 chrX 11378152 11378545 -165595595 - MER41A LTR ERV1 0 554 161 277 30 0 0 chrX 11378545 11378578 -165595562 + MADE1 DNA Mariner 1 33 -47 5805 52 1 0 chrX 11378608 11379267 -165594873 - PABL_A LTR ERV1 0 660 1 25 0 0 0 chrX 11379423 11379448 -165594692 + AT_rich Low_complexity Low_complexity 1 25 0 688 249 8 51 chrX 11381099 11381336 -165592804 + L1MA9 LINE L1 6061 6287 -25 2350 112 0 3 chrX 11381510 11381824 -165592316 + AluSq SINE Alu 1 313 0 1962 122 7 18 chrX 11382495 11382807 -165591333 + AluSq SINE Alu 1 309 0 2250 102 3 0 chrX 11382994 11383289 -165590851 + AluSg SINE Alu 1 296 -14 539 284 72 88 chrX 11384389 11384639 -165589501 - L2 LINE L2 -5 3267 3022 659 278 50 68 chrX 11386044 11386382 -165587758 - MARNA DNA Mariner -23 563 232 295 295 0 0 chrX 11386568 11386661 -165587479 - L1P LINE L1 -2466 3680 3588 191 279 0 0 chrX 11386700 11386743 -165587397 + MER5A DNA MER1_type 144 186 -3 2387 116 88 66 chrX 11387351 11387561 -165586579 - Tigger2a DNA MER2_type -2276 432 228 1719 127 0 108 chrX 11387561 11387877 -165586263 + AluSx SINE Alu 1 282 -30 2387 116 88 66 chrX 11387877 11388089 -165586051 - Tigger2a DNA MER2_type -2480 228 1 1358 26 0 0 chrX 11388192 11388348 -165585792 - L1P LINE L1 -2456 3690 3535 2891 207 28 8 chrX 11388348 11388884 -165585256 - MLT1F1 LTR MaLR -13 554 8 487 286 118 13 chrX 11388996 11389377 -165584763 - L1MEc LINE L1 -3709 2523 2116 22 0 0 0 chrX 11389728 11389750 -165584390 + AT_rich Low_complexity Low_complexity 1 22 0 2523 78 3 0 chrX 11389808 11390117 -165584023 - AluSp SINE Alu -3 310 1 480 270 70 0 chrX 11390195 11390310 -165583830 + L2 LINE L2 3180 3302 -11 362 326 129 13 chrX 11390389 11390837 -165583303 - HAL1 LINE L1 -854 1653 1154 2342 93 0 22 chrX 11390940 11391253 -165582887 - AluSx SINE Alu -6 306 1 336 24 0 0 chrX 11391938 11391979 -165582161 + (TTGG)n Simple_repeat Simple_repeat 2 42 0 1678 164 3 24 chrX 11391979 11392263 -165581877 - AluJb SINE Alu -30 282 3 2322 97 3 0 chrX 11392367 11392667 -165581473 + AluSp SINE Alu 1 301 -12 492 280 24 15 chrX 11392736 11392904 -165581236 - MIR SINE MIR -42 220 55 1606 78 0 45 chrX 11393232 11393475 -165580665 - AluY SINE Alu 0 311 80 2079 141 3 0 chrX 11393475 11393772 -165580368 - AluSx SINE Alu -12 300 2 271 361 118 41 chrX 11395846 11396212 -165577928 - L2 LINE L2 -68 3204 2811 1084 295 117 52 chrX 11396259 11396501 -165577639 - L2 LINE L2 -584 2730 2505 2447 60 0 7 chrX 11396501 11396799 -165577341 + AluY SINE Alu 1 296 -15 1084 295 117 52 chrX 11396799 11397342 -165576798 - L2 LINE L2 -809 2505 1894 238 270 14 68 chrX 11397835 11397909 -165576231 + L2 LINE L2 3116 3185 -87 546 269 12 25 chrX 11398399 11398559 -165575581 - MER74A LTR ERVL -13 545 388 2473 80 3 0 chrX 11398559 11398861 -165575279 + AluSx SINE Alu 1 303 -9 1443 139 126 47 chrX 11398890 11399164 -165574976 - MER74A LTR ERVL -233 325 24 2313 96 7 0 chrX 11399164 11399466 -165574674 + AluSx SINE Alu 1 304 -8 1443 139 126 47 chrX 11399466 11399492 -165574648 - MER74A LTR ERVL -534 24 1 1757 93 14 50 chrX 11400096 11400374 -165573766 - L1MB3 LINE L1 -4 6179 5912 387 148 0 0 chrX 11401251 11401312 -165572828 - MER94 DNA DNA -35 99 39 1919 160 3 0 chrX 11401329 11401623 -165572517 + AluJo SINE Alu 1 295 -17 479 261 65 38 chrX 11402025 11402209 -165571931 + MIR SINE MIR 7 195 -67 2110 122 10 6 chrX 11402228 11402539 -165571601 + AluSx SINE Alu 1 312 0 953 144 0 0 chrX 11403367 11403499 -165570641 + FLAM_C SINE Alu 2 133 0 2374 47 40 3 chrX 11403763 11404061 -165570079 + AluY SINE Alu 1 309 -2 9098 179 35 42 chrX 11405135 11406427 -165567713 - L1MB8 LINE L1 -1 6988 5687 2004 103 107 0 chrX 11406427 11406699 -165567441 - AluSx SINE Alu -11 301 1 9098 179 35 42 chrX 11406699 11408411 -165565729 - L1MB8 LINE L1 -1302 5687 4010 2460 87 62 0 chrX 11408411 11408766 -165565374 - MER51B LTR ERV1 0 377 1 9098 179 35 42 chrX 11408766 11409318 -165564822 - L1MB8 LINE L1 -2979 4010 3455 5422 208 50 50 chrX 11409318 11410757 -165563383 - L1MB8 LINE L1 -5335 1524 83 2072 121 0 0 chrX 11410757 11411047 -165563093 + AluJb SINE Alu 2 291 -21 5422 208 50 50 chrX 11411047 11411115 -165563025 - L1MB8 LINE L1 -6775 84 17 2261 119 0 0 chrX 11411690 11411984 -165562156 - AluSx SINE Alu -18 294 1 23 0 0 0 chrX 11413193 11413216 -165560924 + AT_rich Low_complexity Low_complexity 1 23 0 703 212 21 108 chrX 11413239 11413422 -165560718 - L2 LINE L2 0 3313 3154 2255 73 30 7 chrX 11413422 11413722 -165560418 - AluY SINE Alu -4 307 1 703 212 21 108 chrX 11413722 11413779 -165560361 - L2 LINE L2 -159 3154 3094 606 204 0 9 chrX 11413807 11413920 -165560220 - AluJ SINE Alu -10 302 191 949 139 0 0 chrX 11413924 11414061 -165560079 - AluJ SINE Alu -175 137 1 209 259 102 46 chrX 11414096 11414204 -165559936 - MIR SINE MIR -76 132 19 2079 116 0 14 chrX 11414361 11414654 -165559486 - AluSg SINE Alu -21 289 1 2337 72 10 0 chrX 11414684 11414976 -165559164 + AluSg SINE Alu 1 295 -15 329 151 0 0 chrX 11414986 11415039 -165559101 + AluSg/x SINE Alu 133 185 -115 402 300 84 26 chrX 11415332 11415522 -165558618 - MIR SINE MIR -3 259 59 4554 170 48 40 chrX 11415558 11416211 -165557929 - L1MB5 LINE L1 -6 6168 5521 186 43 0 0 chrX 11416211 11416234 -165557906 + (TCC)n Simple_repeat Simple_repeat 2 24 0 1855 131 40 7 chrX 11416235 11416510 -165557630 - AluSx SINE Alu -28 284 1 4554 170 48 40 chrX 11416510 11417030 -165557110 - L1MB5 LINE L1 -653 5521 5006 807 104 8 15 chrX 11417030 11417164 -165556976 - L1PB4 LINE L1 -3 6153 6021 4554 170 48 40 chrX 11417164 11417759 -165556381 - L1MB5 LINE L1 -1168 5006 4393 289 109 0 0 chrX 11417760 11417806 -165556334 - Alu SINE Alu -8 293 248 2207 136 0 0 chrX 11417807 11418116 -165556024 - AluSx SINE Alu -3 309 1 328 214 0 127 chrX 11418139 11418265 -165555875 - L1MB5 LINE L1 -1716 4430 4321 2229 103 13 13 chrX 11418265 11418567 -165555573 - AluSx SINE Alu -10 302 1 1683 204 21 3 chrX 11418578 11418955 -165555185 - L1MB4 LINE L1 0 6180 5797 262 205 24 48 chrX 11419064 11419147 -165554993 - L1MB4 LINE L1 -2100 4046 3966 1038 151 26 5 chrX 11419187 11419379 -165554761 - L1M3 LINE L1 -396 5784 5589 1447 203 17 17 chrX 11419380 11419740 -165554400 - L1MB5 LINE L1 -1819 4327 3968 331 303 72 20 chrX 11419784 11419979 -165554161 - L1M4 LINE L1 -6332 210 6 1433 228 35 2 chrX 11419984 11420388 -165553752 - L1MCa LINE L1 -901 5525 5109 1111 176 0 109 chrX 11420388 11420584 -165553556 - AluJo SINE Alu -6 306 143 2011 133 7 3 chrX 11420584 11420870 -165553270 - AluSx SINE Alu -25 287 1 1111 176 0 109 chrX 11420870 11420929 -165553211 - AluJo SINE Alu -169 143 79 6762 233 55 31 chrX 11420929 11421216 -165552924 - L1MCa LINE L1 -1313 5113 4834 2318 96 0 0 chrX 11421216 11421518 -165552622 - AluSx SINE Alu -10 302 1 6762 233 55 31 chrX 11421518 11422251 -165551889 - L1MCa LINE L1 -1592 4834 4120 2519 59 3 0 chrX 11422251 11422554 -165551586 - AluSp SINE Alu -9 304 1 6762 233 55 31 chrX 11422554 11424043 -165550097 - L1MCa LINE L1 -2306 4120 2543 234 128 0 0 chrX 11424046 11424085 -165550055 + (TC)n Simple_repeat Simple_repeat 2 40 0 1980 142 0 7 chrX 11424119 11424407 -165549733 - AluJb SINE Alu -26 286 1 5370 185 124 40 chrX 11424434 11425519 -165548621 - L1MCa LINE L1 -3947 2479 1487 2386 64 0 32 chrX 11425519 11425833 -165548307 + AluSc SINE Alu 2 305 -4 5370 185 124 40 chrX 11425833 11427159 -165546981 - L1MCa LINE L1 -4939 1487 86 2823 25 0 0 chrX 11427159 11427477 -165546663 - AluYb8 SINE Alu 0 318 1 5370 185 124 40 chrX 11427477 11427565 -165546575 - L1MCa LINE L1 -6340 86 7 32 95 0 0 chrX 11428500 11428595 -165545545 + AT_rich Low_complexity Low_complexity 1 95 0 254 368 33 20 chrX 11429555 11429707 -165544433 + L2 LINE L2 2852 3005 -267 295 204 258 0 chrX 11429819 11429951 -165544189 + MER104 DNA Tc2 13 178 -2 534 244 57 0 chrX 11429966 11430089 -165544051 + L2 LINE L2 3139 3268 -4 2461 84 3 0 chrX 11431906 11432217 -165541923 - AluSx SINE Alu 0 312 1 700 194 7 7 chrX 11432667 11432806 -165541334 - MER119 DNA MER1_type -216 367 229 2679 211 69 14 chrX 11432808 11434239 -165539901 - L1MD2 LINE L1 -10 6743 5205 * 2837 234 44 18 chrX 11434238 11435202 -165538938 - L1MD2 LINE L1 -2533 4007 3019 4430 188 94 75 chrX 11435232 11435628 -165538512 - L1MD2 LINE L1 -4120 2420 2033 1906 138 0 24 chrX 11435628 11435948 -165538192 - AluJb SINE Alu 0 313 1 4430 188 94 75 chrX 11435948 11436166 -165537974 - L1MD2 LINE L1 -4507 2033 1821 2393 72 0 3 chrX 11436166 11436458 -165537682 - AluSc SINE Alu -18 291 1 4430 188 94 75 chrX 11436458 11436988 -165537152 - L1MD2 LINE L1 -4719 1821 1302 1725 155 40 10 chrX 11436988 11437291 -165536849 - AluJb SINE Alu 0 312 1 4430 188 94 75 chrX 11437291 11437784 -165536356 - L1MD2 LINE L1 -5238 1302 749 735 185 73 15 chrX 11437784 11437989 -165536151 - L1MD2 LINE L1 -6074 466 250 * 937 195 29 24 chrX 11437987 11438233 -165535907 - L1MDb LINE L1 -5307 1236 990 849 248 78 23 chrX 11438673 11439020 -165535120 - L1MDb LINE L1 -6158 382 17 22 56 0 0 chrX 11439089 11439125 -165535015 + AT_rich Low_complexity Low_complexity 1 36 0 253 336 58 29 chrX 11439134 11439238 -165534902 - L2 LINE L2 -33 3239 3133 916 213 20 10 chrX 11439892 11440089 -165534051 - MIR SINE MIR -44 218 20 1886 147 3 28 chrX 11440417 11440737 -165533403 + AluJo SINE Alu 1 312 0 2376 88 3 3 chrX 11441724 11442029 -165532111 - AluSq SINE Alu -4 309 5 223 195 0 0 chrX 11442579 11442620 -165531520 + L2 LINE L2 3262 3302 -11 236 30 30 0 chrX 11442622 11442655 -165531485 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 2920 127 44 10 chrX 11443291 11443787 -165530353 - LTR10D LTR ERV1 0 513 1 760 269 170 10 chrX 11446048 11446465 -165527675 - Tigger8 DNA MER2_type -160 506 23 1697 141 11 28 chrX 11447031 11447360 -165526780 - AluJb SINE Alu 0 328 5 2456 75 0 0 chrX 11447443 11447737 -165526403 + AluSg SINE Alu 15 308 -2 192 276 118 70 chrX 11448471 11448743 -165525397 - L2 LINE L2 -673 2641 2357 438 20 0 0 chrX 11448924 11448975 -165525165 + (TG)n Simple_repeat Simple_repeat 2 52 0 1717 96 0 21 chrX 11448975 11449214 -165524926 - AluSx SINE Alu -26 286 53 1754 42 0 5 chrX 11449536 11449752 -165524388 - L1PA5 LINE L1 0 6154 5940 2411 90 0 0 chrX 11449886 11450187 -165523953 - AluSx SINE Alu -11 301 1 616 72 0 0 chrX 11450412 11450495 -165523645 - L1PA7 LINE L1 -1 6153 6071 769 191 121 20 chrX 11450566 11450765 -165523375 - MER20 DNA MER1_type 0 219 1 21 57 0 0 chrX 11451590 11451625 -165522515 + AT_rich Low_complexity Low_complexity 1 35 0 762 274 46 21 chrX 11451853 11452094 -165522046 + MIR SINE MIR 1 247 -15 1758 90 0 0 chrX 11452156 11452378 -165521762 + AluSg/x SINE Alu 85 306 -6 259 61 0 0 chrX 11452388 11452421 -165521719 - U2 snRNA snRNA -155 33 1 1202 168 83 80 chrX 11452625 11452964 -165521176 - MER2 DNA MER2_type -5 340 1 216 0 0 0 chrX 11454671 11454695 -165519445 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2164 90 4 0 chrX 11454699 11454978 -165519162 - AluSg SINE Alu -30 280 1 5897 29 1 0 chrX 11455106 11455794 -165518346 - L1PA3 LINE L1 -2 6153 5465 356 233 41 0 chrX 11455995 11456068 -165518072 - L2 LINE L2 -5 3308 3233 355 275 45 51 chrX 11456222 11456248 -165517892 + HAL1b LINE L1 275 300 -1048 216 0 0 0 chrX 11456248 11456272 -165517868 + (CA)n Simple_repeat Simple_repeat 2 25 0 355 275 45 51 chrX 11456272 11456423 -165517717 + HAL1b LINE L1 300 451 -897 345 316 20 0 chrX 11456564 11456662 -165517478 - MER91B DNA MER1_type -61 129 30 369 320 102 40 chrX 11456678 11457000 -165517140 + HAL1b LINE L1 474 815 -533 362 252 80 20 chrX 11457649 11457800 -165516340 + L1ME4a LINE L1 5503 5662 -459 244 244 142 31 chrX 11457969 11458096 -165516044 + L1ME4a LINE L1 5973 6113 -8 267 79 0 0 chrX 11459998 11460036 -165514104 + (TA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 11460311 11460334 -165513806 + AT_rich Low_complexity Low_complexity 1 23 0 502 226 109 54 chrX 11460721 11460960 -165513180 + MER112 DNA MER1_type 8 259 -1 2033 120 0 13 chrX 11461628 11461927 -165512213 - AluJb SINE Alu -17 295 1 2070 141 14 22 chrX 11462990 11463071 -165511069 - MER47A DNA MER2_type -1957 366 286 2079 126 3 14 chrX 11463071 11463364 -165510776 + AluJb SINE Alu 1 290 -22 2070 141 14 22 chrX 11463364 11463650 -165510490 - MER47A DNA MER2_type -2037 286 2 215 278 0 0 chrX 11464116 11464170 -165509970 + CT-rich Low_complexity Low_complexity 1 54 0 1906 146 0 4 chrX 11464185 11464466 -165509674 - AluJo SINE Alu -32 280 1 233 273 11 45 chrX 11466524 11466612 -165507528 - MIR3 SINE MIR -12 196 112 210 281 191 0 chrX 11466809 11466898 -165507242 + MIR SINE MIR 40 145 -117 286 309 0 106 chrX 11467644 11467767 -165506373 - MIR3 SINE MIR -94 114 5 532 288 135 54 chrX 11468220 11468686 -165505454 - L2 LINE L2 -3 3310 2807 812 202 49 9 chrX 11469624 11469909 -165504231 - MER46C DNA MER2_type -12 326 1 22 56 0 0 chrX 11469968 11470004 -165504136 + AT_rich Low_complexity Low_complexity 1 36 0 939 113 0 8 chrX 11471618 11471751 -165502389 + FLAM_C SINE Alu 1 132 -1 24 77 0 0 chrX 11472262 11472314 -165501826 + AT_rich Low_complexity Low_complexity 1 52 0 1068 172 0 0 chrX 11472369 11472532 -165501608 - FAM SINE Alu -12 163 1 24 0 0 0 chrX 11472655 11472679 -165501461 + AT_rich Low_complexity Low_complexity 1 24 0 236 353 0 0 chrX 11472720 11472805 -165501335 - MIR SINE MIR -94 114 30 373 204 97 9 chrX 11472927 11473040 -165501100 - MLT1J LTR MaLR -11 500 378 432 240 158 0 chrX 11473100 11473246 -165500894 - MLT1J LTR MaLR -341 170 2 23 86 0 0 chrX 11473752 11473810 -165500330 + AT_rich Low_complexity Low_complexity 1 58 0 617 224 71 0 chrX 11473911 11474094 -165500046 - Charlie1 DNA MER1_type 0 2761 2566 * 1778 206 84 31 chrX 11474093 11474582 -165499558 - Charlie1a DNA MER1_type -940 515 1 21 0 0 0 chrX 11476183 11476204 -165497936 + AT_rich Low_complexity Low_complexity 1 21 0 734 266 115 63 chrX 11479928 11480450 -165493690 - MLT1H LTR MaLR 0 549 1 207 342 25 0 chrX 11480502 11480581 -165493559 - L2 LINE L2 0 3313 3233 1883 158 0 16 chrX 11480583 11480899 -165493241 + AluSx SINE Alu 1 311 -1 26 30 0 0 chrX 11481339 11481372 -165492768 + AT_rich Low_complexity Low_complexity 1 33 0 2183 123 0 3 chrX 11484104 11484413 -165489727 + AluSx SINE Alu 3 310 -2 7383 40 7 0 chrX 11484614 11485768 -165488372 - L1PA5 LINE L1 -1 6153 4992 568 261 107 81 chrX 11486333 11486840 -165487300 + L2 LINE L2 2758 3299 -14 389 293 157 56 chrX 11487091 11487504 -165486636 + L2 LINE L2 2818 3272 0 195 284 0 40 chrX 11487837 11487911 -165486229 - L2 LINE L2 -212 3060 2990 641 302 67 4 chrX 11488390 11488615 -165485525 + MIR SINE MIR 10 248 -14 374 333 16 31 chrX 11489054 11489183 -165484957 + MIR SINE MIR 19 145 -63 2229 107 0 3 chrX 11490372 11490672 -165483468 + AluSg SINE Alu 1 299 -11 276 331 54 0 chrX 11491826 11491956 -165482184 - MER103 DNA DNA -19 147 11 465 278 77 40 chrX 11492457 11492705 -165481435 - L1ME3A LINE L1 -37 6133 5877 2290 102 13 0 chrX 11493063 11493367 -165480773 - AluSq SINE Alu -5 308 1 21 0 0 0 chrX 11493616 11493637 -165480503 + AT_rich Low_complexity Low_complexity 1 21 0 266 206 28 47 chrX 11493757 11493864 -165480276 + L1ME4a LINE L1 6016 6120 -1 1758 189 0 6 chrX 11494913 11495226 -165478914 - AluJo SINE Alu -1 311 1 1381 161 146 0 chrX 11495315 11495569 -165478571 - AluJb SINE Alu -11 291 1 213 39 0 0 chrX 11496849 11496875 -165477265 + (TCCA)n Simple_repeat Simple_repeat 4 29 0 534 282 83 40 chrX 11497384 11497732 -165476408 - LTR33 LTR ERVL -158 363 1 738 137 0 0 chrX 11500972 11501089 -165473051 + AluSg/x SINE Alu 196 312 0 279 258 0 0 chrX 11501151 11501213 -165472927 + MIR SINE MIR 201 262 0 2166 85 4 0 chrX 11501373 11501644 -165472496 + AluSc SINE Alu 1 272 -37 363 23 0 0 chrX 11501646 11501690 -165472450 + (CA)n Simple_repeat Simple_repeat 1 44 0 248 304 82 70 chrX 11502256 11502414 -165471726 - L2 LINE L2 -681 2633 2474 466 296 17 26 chrX 11502447 11502618 -165471522 - MIR3 SINE MIR -24 184 13 21 36 0 0 chrX 11504003 11504031 -165470109 + AT_rich Low_complexity Low_complexity 1 28 0 1940 149 0 3 chrX 11504586 11504874 -165469266 + AluJo SINE Alu 5 291 -21 227 264 150 37 chrX 11505163 11505324 -165468816 + L2 LINE L2 2564 2735 -579 428 309 42 37 chrX 11505338 11505529 -165468611 - L2 LINE L2 -17 3296 3105 203 340 13 53 chrX 11505568 11505718 -165468422 + L2 LINE L2 2720 2863 -451 2415 77 0 16 chrX 11506620 11506931 -165467209 + AluY SINE Alu 1 306 -5 25 31 0 0 chrX 11506947 11506979 -165467161 + AT_rich Low_complexity Low_complexity 1 32 0 1827 174 43 0 chrX 11507857 11508156 -165465984 + AluJb SINE Alu 1 312 0 1149 154 0 0 chrX 11508416 11508591 -165465549 + AluJb SINE Alu 133 307 -5 319 336 86 41 chrX 11509045 11509265 -165464875 - MIR SINE MIR -32 230 1 614 222 21 0 chrX 11509923 11510067 -165464073 + MIR SINE MIR 109 255 -7 1685 185 4 0 chrX 11510907 11511188 -165462952 - AluJb SINE Alu -30 282 1 2387 89 3 0 chrX 11511815 11512118 -165462022 + AluSp SINE Alu 1 304 -9 258 342 0 0 chrX 11512505 11512584 -165461556 + L2 LINE L2 3188 3266 -6 2167 138 0 0 chrX 11514158 11514463 -165459677 + AluSx SINE Alu 1 305 -7 792 152 23 15 chrX 11514631 11514763 -165459377 - FLAM_C SINE Alu 0 133 1 1802 142 59 3 chrX 11516214 11516503 -165457637 - AluJb SINE Alu -7 305 1 221 325 90 48 chrX 11518103 11518269 -165455871 - MIR3 SINE MIR -12 196 24 1922 149 0 10 chrX 11521538 11521840 -165452300 - AluJb SINE Alu -13 299 1 590 71 12 0 chrX 11522133 11522217 -165451923 + (TC)n Simple_repeat Simple_repeat 1 85 0 1200 183 5 9 chrX 11522224 11522437 -165451703 - AluJo SINE Alu -16 296 85 207 69 0 0 chrX 11523255 11523284 -165450856 + (A)n Simple_repeat Simple_repeat 1 29 0 631 314 43 5 chrX 11523359 11523547 -165450593 + MLT1J LTR MaLR 67 261 -250 23 33 0 0 chrX 11524910 11524940 -165449200 + AT_rich Low_complexity Low_complexity 1 30 0 1217 150 14 27 chrX 11527355 11527575 -165446565 + MER20 DNA MER1_type 3 219 0 851 236 6 0 chrX 11531275 11531453 -165442687 - MER58A DNA MER1_type -1 223 45 580 264 116 28 chrX 11531758 11531808 -165442332 - MIR SINE MIR -10 252 208 423 0 0 0 chrX 11531808 11531855 -165442285 + (TTA)n Simple_repeat Simple_repeat 2 48 0 580 264 116 28 chrX 11531855 11532020 -165442120 - MIR SINE MIR -54 208 18 2035 115 0 37 chrX 11532447 11532590 -165441550 + AluSx SINE Alu 1 148 -156 2372 78 17 0 chrX 11532590 11532884 -165441256 + AluSg SINE Alu 9 307 -3 2035 115 0 37 chrX 11532884 11533055 -165441085 + AluSx SINE Alu 148 304 0 617 222 58 12 chrX 11533065 11533236 -165440904 + MIR SINE MIR 34 212 -50 4324 157 75 19 chrX 11534148 11535654 -165438486 + L1MB8 LINE L1 4592 6178 0 910 132 201 0 chrX 11537818 11537992 -165436148 - MER3 DNA MER1_type 0 209 1 2190 109 0 16 chrX 11538229 11538541 -165435599 + AluSx SINE Alu 1 307 -5 21 0 0 0 chrX 11539299 11539320 -165434820 + AT_rich Low_complexity Low_complexity 1 21 0 578 295 140 29 chrX 11540769 11541226 -165432914 + L2 LINE L2 2226 2631 -641 1284 266 58 50 chrX 11541226 11541624 -165432516 + MLT1J LTR MaLR 4 408 -103 2269 103 0 10 chrX 11541624 11541926 -165432214 - AluSx SINE Alu -13 299 1 1284 266 58 50 chrX 11541926 11542030 -165432110 + MLT1J LTR MaLR 408 510 -1 578 295 140 29 chrX 11542030 11542306 -165431834 + L2 LINE L2 2631 3055 -217 1627 93 5 5 chrX 11542391 11542605 -165431535 - AluSg/x SINE Alu -15 295 82 739 109 18 0 chrX 11543527 11543637 -165430503 + AluSg/x SINE Alu 135 246 -64 542 265 159 51 chrX 11543666 11543709 -165430431 + MLT1J LTR MaLR 6 43 -468 1904 157 7 3 chrX 11543709 11544014 -165430126 - AluJb SINE Alu -6 306 1 542 265 159 51 chrX 11544014 11544279 -165429861 + MLT1J LTR MaLR 43 381 -130 1548 121 191 4 chrX 11544279 11544536 -165429604 + AluJo SINE Alu 1 305 -7 542 265 159 51 chrX 11544536 11544679 -165429461 + MLT1J LTR MaLR 381 507 -4 669 156 8 0 chrX 11544708 11544830 -165429310 - FRAM SINE Alu -13 163 41 477 227 133 0 chrX 11546083 11546233 -165427907 - MER5B DNA MER1_type 0 178 9 450 172 20 30 chrX 11546293 11546392 -165427748 + MIR SINE MIR 94 191 -71 405 0 0 0 chrX 11546692 11546737 -165427403 + (TG)n Simple_repeat Simple_repeat 1 45 0 341 94 0 16 chrX 11546737 11546801 -165427339 + (GA)n Simple_repeat Simple_repeat 2 64 0 2333 96 0 0 chrX 11547858 11548151 -165425989 + AluSx SINE Alu 1 293 -19 2332 97 7 3 chrX 11549158 11549468 -165424672 + AluSx SINE Alu 1 311 -1 1108 159 63 34 chrX 11549621 11549828 -165424312 - AluJb SINE Alu -14 298 86 1041 213 37 0 chrX 11550715 11550931 -165423209 + MER58A DNA MER1_type 1 224 0 468 275 47 21 chrX 11550939 11551132 -165423008 - MLT1I LTR MaLR -13 396 199 238 254 205 16 chrX 11551283 11551405 -165422735 - MIR SINE MIR -98 164 20 2069 151 3 0 chrX 11551452 11551763 -165422377 - AluJb SINE Alu 0 312 1 247 214 71 0 chrX 11552302 11552358 -165421782 + MER58 DNA MER1_type 199 258 -2162 2382 105 0 7 chrX 11552689 11552994 -165421146 - AluSx SINE Alu -9 303 1 2172 107 7 0 chrX 11553361 11553659 -165420481 + AluSx SINE Alu 1 300 -12 368 239 78 55 chrX 11553674 11553892 -165420248 - L1ME4a LINE L1 -28 6093 5871 2429 97 0 3 chrX 11553917 11554228 -165419912 - AluSq SINE Alu -3 310 1 345 24 0 0 chrX 11554248 11554290 -165419850 + (CAT)n Simple_repeat Simple_repeat 2 43 0 976 192 9 55 chrX 11554599 11554663 -165419477 - MER3 DNA MER1_type 0 209 144 2065 114 31 3 chrX 11554663 11554952 -165419188 + AluSx SINE Alu 1 297 -15 976 192 9 55 chrX 11554952 11555106 -165419034 - MER3 DNA MER1_type -65 144 1 456 236 199 62 chrX 11555117 11555358 -165418782 + MER39 LTR ERV1 1 274 -433 * 1408 203 95 67 chrX 11555330 11555705 -165418435 + MER39 LTR ERV1 164 707 0 1735 94 31 0 chrX 11555756 11555980 -165418160 - AluSx SINE Alu -81 231 1 936 149 58 0 chrX 11556563 11556717 -165417423 + MLT1A1 LTR MaLR 1 163 -202 3155 147 52 42 chrX 11556719 11557518 -165416622 - LTR1 LTR ERV1 0 785 22 1242 155 33 0 chrX 11557517 11557723 -165416417 + MLT1A1 LTR MaLR 166 365 0 * 3212 55 19 17 chrX 11557782 11558101 -165416039 - L1PA5 LINE L1 -8 6146 5824 2664 47 0 0 chrX 11558101 11558398 -165415742 - AluY SINE Alu -14 297 1 3212 55 19 17 chrX 11558398 11558495 -165415645 - L1PA5 LINE L1 -330 5824 5729 2418 82 10 0 chrX 11558504 11558809 -165415331 - AluSp SINE Alu -5 308 1 2013 117 16 23 chrX 11558809 11559117 -165415023 - AluJo SINE Alu -6 306 1 191 324 29 20 chrX 11559201 11559303 -165414837 + L2 LINE L2 2037 2139 -1175 1509 264 32 16 chrX 11559379 11559815 -165414325 + L1ME3A LINE L1 5495 5937 -233 2266 103 0 3 chrX 11559817 11560118 -165414022 + AluSx SINE Alu 1 300 -12 1853 124 0 11 chrX 11560158 11560476 -165413664 - AluJo SINE Alu 0 328 14 222 37 0 0 chrX 11560626 11560653 -165413487 + (CTG)n Simple_repeat Simple_repeat 3 29 0 251 140 20 0 chrX 11560751 11560801 -165413339 + (TG)n Simple_repeat Simple_repeat 1 51 0 541 281 78 29 chrX 11565268 11565510 -165408630 - MIR SINE MIR -1 261 8 1575 183 3 11 chrX 11565547 11565832 -165408308 - AluJb SINE Alu -21 291 9 2190 108 0 3 chrX 11566357 11566643 -165407497 - AluSx SINE Alu -23 289 5 2211 97 6 19 chrX 11566753 11567064 -165407076 - AluSx SINE Alu -4 308 2 2332 56 3 17 chrX 11567317 11567604 -165406536 - AluY SINE Alu -5 306 24 554 212 14 27 chrX 11567616 11567762 -165406378 - L1MB8 LINE L1 0 6178 6035 1858 131 0 77 chrX 11567822 11567990 -165406150 - AluJb SINE Alu -23 289 154 2397 107 3 0 chrX 11567990 11568300 -165405840 - AluSx SINE Alu -1 311 1 1858 131 0 77 chrX 11568300 11568444 -165405696 - AluJb SINE Alu -158 154 1 1787 168 0 29 chrX 11568506 11568816 -165405324 - AluJb SINE Alu -11 301 1 2138 143 0 3 chrX 11568847 11569161 -165404979 + AluSq SINE Alu 1 313 0 2275 81 10 3 chrX 11569172 11569467 -165404673 + AluSp SINE Alu 1 297 -16 21 36 0 0 chrX 11570453 11570481 -165403659 + AT_rich Low_complexity Low_complexity 1 28 0 2138 128 0 0 chrX 11570548 11570845 -165403295 + AluSx SINE Alu 1 297 -15 21 57 0 0 chrX 11571294 11571329 -165402811 + AT_rich Low_complexity Low_complexity 1 35 0 246 200 100 50 chrX 11571365 11571465 -165402675 - L2 LINE L2 -1 3312 3208 2069 120 0 0 chrX 11571482 11571756 -165402384 - AluSx SINE Alu -25 287 14 2723 88 31 149 chrX 11571819 11572308 -165401832 - Tigger2 DNA MER2_type -3 2715 1 310 266 119 21 chrX 11572354 11572497 -165401643 - L2 LINE L2 -262 3051 2895 2061 120 19 13 chrX 11572520 11572828 -165401312 + AluJb SINE Alu 1 310 -2 2399 89 0 0 chrX 11573963 11574266 -165399874 - AluSg SINE Alu -7 303 1 2475 73 0 3 chrX 11574411 11574712 -165399428 + AluSg SINE Alu 1 300 -10 376 238 158 0 chrX 11574822 11574923 -165399217 + L2 LINE L2 3182 3298 -15 285 29 0 0 chrX 11575297 11575331 -165398809 + (TG)n Simple_repeat Simple_repeat 2 35 0 3659 152 48 21 chrX 11575348 11575460 -165398680 - Tigger1 DNA MER2_type 0 2418 2311 2158 112 10 0 chrX 11575460 11575756 -165398384 + AluSx SINE Alu 1 299 -13 3659 152 48 21 chrX 11575756 11576307 -165397833 - Tigger1 DNA MER2_type -107 2311 1737 378 197 30 0 chrX 11576294 11576360 -165397780 - AluJ/FLAM SINE Alu -234 68 1 * 1814 127 4 11 chrX 11576366 11576634 -165397506 - AluSq SINE Alu -6 307 42 936 235 76 73 chrX 11576636 11576722 -165397418 - L1MCc LINE L1 -5152 1271 1187 1978 204 114 32 chrX 11576722 11577036 -165397104 - MER87 LTR ERV1 0 541 169 2213 116 3 0 chrX 11577036 11577328 -165396812 + AluJb SINE Alu 1 293 -19 1978 204 114 32 chrX 11577328 11577513 -165396627 - MER87 LTR ERV1 -372 169 1 936 235 76 73 chrX 11577513 11577822 -165396318 - L1MCc LINE L1 -5236 1187 875 2327 57 0 4 chrX 11578370 11578695 -165395445 - AluY SINE Alu 0 325 2 372 336 81 18 chrX 11579018 11579241 -165394899 - HAL1 LINE L1 -745 1762 1526 1249 77 35 0 chrX 11579252 11579422 -165394718 - L1PA14 LINE L1 -1 6160 5985 1690 75 18 0 chrX 11579468 11579696 -165394444 - L1PA14 LINE L1 -1 6160 5929 560 144 44 0 chrX 11579715 11579805 -165394335 - AluJ/FLAM SINE Alu -217 95 2 23 0 0 0 chrX 11579910 11579933 -165394207 + AT_rich Low_complexity Low_complexity 1 23 0 258 289 85 24 chrX 11580025 11580300 -165393840 - L1MEd LINE L1 -4862 1257 949 195 227 0 0 chrX 11580330 11580396 -165393744 + (TA)n Simple_repeat Simple_repeat 2 67 0 762 161 0 8 chrX 11580397 11580515 -165393625 - FLAM_C SINE Alu -12 121 5 2430 93 0 0 chrX 11580979 11581280 -165392860 - AluSx SINE Alu -11 301 1 1870 126 87 36 chrX 11581427 11581784 -165392356 + THE1C LTR MaLR 1 375 0 2036 70 37 60 chrX 11581984 11582282 -165391858 + AluSq SINE Alu 21 311 -2 973 137 63 47 chrX 11582968 11583158 -165390982 + MER20 DNA MER1_type 22 214 -5 388 294 92 33 chrX 11583241 11583513 -165390627 + L2 LINE L2 1707 1994 -1320 546 149 0 0 chrX 11583743 11583830 -165390310 - AluJ/FRAM SINE Alu -10 302 216 729 150 8 8 chrX 11583834 11583954 -165390186 - FLAM_C SINE Alu -23 120 1 226 319 76 17 chrX 11583967 11584086 -165390054 + L2 LINE L2 2256 2381 -933 254 299 72 53 chrX 11584145 11584352 -165389788 + L2 LINE L2 2669 2879 -435 2363 90 0 16 chrX 11584745 11585057 -165389083 - AluSg1 SINE Alu -2 307 1 2400 81 0 0 chrX 11585697 11585995 -165388145 - AluSc SINE Alu -11 298 1 345 311 10 0 chrX 11586180 11586283 -165387857 + MIR SINE MIR 153 256 -6 2301 99 0 0 chrX 11586485 11586777 -165387363 - AluSq SINE Alu -21 292 1 199 193 140 18 chrX 11586871 11586928 -165387212 - MIR SINE MIR -72 190 127 2321 96 3 0 chrX 11587091 11587393 -165386747 - AluSp SINE Alu -10 303 1 1942 131 3 7 chrX 11587452 11587742 -165386398 - AluJb SINE Alu -23 289 1 1651 108 0 0 chrX 11588328 11588542 -165385598 - AluSg/x SINE Alu -12 298 85 2313 98 0 3 chrX 11588722 11589027 -165385113 - AluSg SINE Alu -1 309 6 2305 114 0 0 chrX 11590130 11590437 -165383703 - AluSg SINE Alu -3 307 1 1778 125 4 0 chrX 11590462 11590710 -165383430 - AluSx SINE Alu -15 297 49 746 159 179 0 chrX 11590793 11590938 -165383202 - AluSg/x SINE Alu -10 302 132 232 231 0 0 chrX 11591736 11591775 -165382365 - Tigger3(Golem) DNA MER2_type -2989 40 2 2261 93 36 0 chrX 11591938 11592240 -165381900 - AluSq SINE Alu 0 313 1 228 227 216 10 chrX 11593194 11593291 -165380849 - L2 LINE L2 -13 3300 3184 190 266 47 0 chrX 11593314 11593378 -165380762 - MIR SINE MIR -10 252 186 286 207 35 58 chrX 11593416 11593503 -165380637 + HsTC2 DNA Tc2 1 85 -1813 195 69 0 0 chrX 11593507 11593536 -165380604 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2132 115 0 0 chrX 11593538 11593816 -165380324 - AluSg SINE Alu -32 278 1 2568 71 0 7 chrX 11593816 11594125 -165380015 - AluSq SINE Alu -5 308 1 256 200 229 0 chrX 11594261 11594366 -165379774 + MER3 DNA MER1_type 28 156 -53 1386 137 0 89 chrX 11594379 11594649 -165379491 + AluJb SINE Alu 63 308 -4 873 163 0 0 chrX 11594651 11594780 -165379360 - MER3 DNA MER1_type -80 129 1 733 105 92 92 chrX 11595134 11595176 -165378964 - MSTA LTR MaLR 0 428 387 2209 100 7 19 chrX 11595176 11595486 -165378654 + AluSx SINE Alu 1 306 -6 733 105 92 92 chrX 11595486 11595595 -165378545 - MSTA LTR MaLR -40 388 277 1393 102 0 0 chrX 11595597 11595774 -165378366 - AluSc SINE Alu -1 308 132 2044 86 9 93 chrX 11595774 11596098 -165378042 - AluSc SINE Alu -12 297 1 1485 154 47 18 chrX 11596098 11596377 -165377763 - MSTA LTR MaLR -141 287 1 1815 156 3 10 chrX 11596385 11596703 -165377437 - AluJb SINE Alu 0 316 1 632 236 44 28 chrX 11596971 11597153 -165376987 - L1ME LINE L1 -362 5800 5616 1520 92 40 31 chrX 11597874 11598101 -165376039 - MER30 DNA MER1_type -1 229 1 1152 149 39 0 chrX 11598233 11598414 -165375726 + MER5A DNA MER1_type 2 189 0 2536 87 0 0 chrX 11598644 11598956 -165375184 + AluSx SINE Alu 1 312 0 219 36 0 0 chrX 11599916 11599944 -165374196 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 327 251 43 74 chrX 11600046 11600147 -165373993 - L1ME LINE L1 -2329 5479 5376 755 190 0 29 chrX 11600147 11600284 -165373856 - FLAM_C SINE Alu 0 133 1 327 251 43 74 chrX 11600284 11600413 -165373727 - L1ME LINE L1 -2432 5376 5256 729 211 25 12 chrX 11600616 11600777 -165373363 + MER97a DNA MER1_type? 1 163 -731 1064 267 151 46 chrX 11600815 11601286 -165372854 - L1ME LINE L1 -954 5192 4771 2222 84 0 14 chrX 11601286 11601594 -165372546 + AluSx SINE Alu 2 305 0 1064 267 151 46 chrX 11601594 11601980 -165372160 - L1ME LINE L1 -1375 4771 4231 1998 124 17 7 chrX 11602417 11602715 -165371425 - AluJo SINE Alu -11 301 1 415 232 0 0 chrX 11602932 11603014 -165371126 + LTR32 LTR ERVL 7 88 -383 * 2381 167 19 30 chrX 11602994 11603456 -165370684 + LTR32 LTR ERVL 15 471 0 2369 104 0 0 chrX 11604959 11605268 -165368872 + AluSx SINE Alu 1 309 -3 2507 73 3 0 chrX 11605269 11605569 -165368571 + AluSp SINE Alu 1 301 -12 2319 113 3 0 chrX 11605957 11606268 -165367872 + AluSx SINE Alu 1 342 0 187 133 0 0 chrX 11606268 11606298 -165367842 + (GAAAA)n Simple_repeat Simple_repeat 4 180 0 1713 243 68 31 chrX 11606447 11607019 -165367121 - MLT2E LTR ERVL -3 625 1 1672 162 3 46 chrX 11607074 11607086 -165367054 - AluJo SINE Alu 0 501 490 1324 67 0 0 chrX 11607086 11607265 -165366875 - L1MA3 LINE L1 0 6305 6127 1672 162 3 46 chrX 11607265 11607588 -165366552 - AluJo SINE Alu -11 490 1 2019 144 0 3 chrX 11607630 11607943 -165366197 - AluSx SINE Alu 0 312 1 627 61 105 0 chrX 11607948 11608057 -165366083 - L1MA3 LINE L1 -164 6139 6015 2234 112 0 10 chrX 11608858 11609161 -165364979 - AluSx SINE Alu -12 300 1 375 288 35 48 chrX 11609327 11609556 -165364584 + MLT1J LTR MaLR 88 313 -198 711 144 0 8 chrX 11609606 11609724 -165364416 - AluSg/x SINE Alu -4 308 192 1772 112 115 0 chrX 11609799 11610068 -165364072 - AluSq SINE Alu -13 300 1 2361 93 7 7 chrX 11610851 11611161 -165362979 - AluSx SINE Alu -2 310 1 1873 162 3 10 chrX 11611185 11611499 -165362641 - AluJo SINE Alu 0 312 1 295 143 133 57 chrX 11612029 11612111 -165362029 - L1M4c LINE L1 -3660 2722 2629 1758 176 0 16 chrX 11612111 11612418 -165361722 - AluJb SINE Alu -9 303 2 295 143 133 57 chrX 11612418 11612440 -165361700 - L1M4c LINE L1 -3753 2629 2610 1098 259 52 79 chrX 11612548 11612677 -165361463 - L1M4c LINE L1 -3894 2490 2359 2380 75 0 10 chrX 11612677 11612970 -165361170 - AluSc SINE Alu -19 290 1 1774 135 87 14 chrX 11612980 11613269 -165360871 - AluSx SINE Alu -2 310 1 1098 259 52 79 chrX 11613269 11614179 -165359961 - L1M4c LINE L1 -4034 2350 1557 2317 108 0 13 chrX 11614179 11614493 -165359647 - AluSx SINE Alu -2 310 1 1098 259 52 79 chrX 11614493 11614597 -165359543 - L1M4c LINE L1 -4827 1557 1452 2160 113 0 16 chrX 11614609 11614918 -165359222 - AluSx SINE Alu -8 304 1 844 152 0 23 chrX 11614923 11615055 -165359085 - FLAM_C SINE Alu -14 129 1 926 159 49 160 chrX 11615055 11615213 -165358927 - L1M4 LINE L1 -4789 2168 1994 2512 71 0 0 chrX 11615213 11615521 -165358619 - AluY SINE Alu -3 308 1 926 159 49 160 chrX 11615521 11615802 -165358338 - L1M4 LINE L1 -4963 1994 1663 * 3157 139 18 27 chrX 11615797 11616394 -165357746 - L1MC3 LINE L1 0 7785 7194 265 267 11 11 chrX 11616397 11616487 -165357653 - MLT1F1 LTR MaLR -442 125 36 804 147 95 44 chrX 11616488 11616728 -165357412 - L1MC3 LINE L1 -688 7097 6860 2309 106 0 3 chrX 11616728 11617061 -165357079 - AluSx SINE Alu 0 332 1 832 136 0 73 chrX 11617113 11617223 -165356917 - L1MC3 LINE L1 -923 6862 6767 1799 128 14 38 chrX 11617223 11617564 -165356576 - AluJb SINE Alu 0 334 1 832 136 0 73 chrX 11617564 11617629 -165356511 - L1MC3 LINE L1 -1018 6767 6699 301 130 17 2 chrX 11617624 11617688 -165356452 - L1M4 LINE L1 -5180 1679 1612 * 819 226 153 95 chrX 11617688 11618153 -165355987 - L1M4 LINE L1 -6358 501 10 309 330 165 0 chrX 11619061 11619237 -165354903 - MIR SINE MIR 0 262 58 2234 88 3 17 chrX 11619327 11619622 -165354518 - AluSg SINE Alu -19 291 1 2058 116 0 24 chrX 11620219 11620512 -165353628 - AluSx SINE Alu -18 294 9 881 199 5 53 chrX 11620665 11620871 -165353269 - AluJb SINE Alu -26 286 91 29 28 0 0 chrX 11620989 11621025 -165353115 + AT_rich Low_complexity Low_complexity 1 36 0 562 282 19 5 chrX 11621412 11621618 -165352522 - LTR54 LTR ERV1 -9 501 293 445 160 64 80 chrX 11621631 11621756 -165352384 - LTR54 LTR ERV1 -326 184 62 362 384 68 17 chrX 11621985 11622222 -165351918 + L2 LINE L2 2836 3084 -188 191 156 0 0 chrX 11623008 11623040 -165351100 + L2 LINE L2 3274 3305 -8 202 273 0 36 chrX 11623096 11623151 -165350989 - MIR SINE MIR -58 150 98 225 283 61 91 chrX 11623152 11623214 -165350926 + L3 LINE CR1 1351 1410 -167 1582 185 28 3 chrX 11623214 11623501 -165350639 - AluJo SINE Alu -18 294 1 225 283 61 91 chrX 11623501 11623537 -165350603 + L3 LINE CR1 1410 1446 -131 2241 101 0 0 chrX 11623538 11623834 -165350306 + AluSx SINE Alu 3 298 -14 980 213 13 13 chrX 11624336 11624561 -165349579 + MER21B LTR ERV1 81 305 -558 1849 130 116 44 chrX 11624599 11625029 -165349111 + MER4D LTR ERV1 1 461 -442 722 105 0 19 chrX 11625029 11625134 -165349006 - AluSx SINE Alu -22 290 188 1497 92 0 0 chrX 11625161 11625357 -165348783 - AluSx SINE Alu -110 202 7 1614 92 76 62 chrX 11625363 11625667 -165348473 + MER4E LTR ERV1 346 653 -126 771 118 8 8 chrX 11625670 11625789 -165348351 + AluJb SINE Alu 1 119 -193 807 85 20 72 chrX 11625796 11625949 -165348191 + MER4E LTR ERV1 624 768 -11 1182 183 108 115 chrX 11625961 11626360 -165347780 + MER21B LTR ERV1 354 846 -85 235 341 37 0 chrX 11627198 11627280 -165346860 - MIR3 SINE MIR 0 208 124 1098 252 81 14 chrX 11627769 11628214 -165345926 - L1MC/D LINE L1 -2016 5792 5318 518 300 120 64 chrX 11628337 11629290 -165344850 + L2 LINE L2 2292 3310 -3 264 402 53 11 chrX 11629304 11629493 -165344647 - L3 LINE CR1 -1345 232 36 1622 159 31 31 chrX 11629829 11630118 -165344022 - AluJb SINE Alu -23 289 1 2082 121 0 34 chrX 11630138 11630461 -165343679 - AluSx SINE Alu 0 312 1 218 242 194 0 chrX 11631433 11631495 -165342645 - L3 LINE CR1 -11 1566 1493 766 308 133 33 chrX 11631529 11631958 -165342182 + L2 LINE L2 2842 3313 0 2872 163 61 94 chrX 11631990 11632892 -165341248 - MER4D LTR ERV1 -11 892 21 1311 106 0 21 chrX 11632894 11633082 -165341058 - AluSg/x SINE Alu -11 301 118 457 324 158 15 chrX 11633099 11633371 -165340769 - L3 LINE CR1 -209 1368 1058 219 36 0 0 chrX 11633661 11633689 -165340451 + (TTGTG)n Simple_repeat Simple_repeat 2 29 0 180 250 0 0 chrX 11633694 11633742 -165340398 + CT-rich Low_complexity Low_complexity 2 49 0 1162 147 35 100 chrX 11633742 11634001 -165340139 - AluJb SINE Alu -39 273 32 358 174 58 12 chrX 11634206 11634292 -165339848 - MLT1E2 LTR MaLR 0 626 537 421 226 58 70 chrX 11634535 11634680 -165339460 - L1M4 LINE L1 -3235 2911 2769 1840 147 55 3 chrX 11634680 11634973 -165339167 - AluSx SINE Alu -4 308 1 421 226 58 70 chrX 11634973 11635084 -165339056 - L1M4 LINE L1 -3377 2769 2658 2408 58 0 29 chrX 11635260 11635571 -165338569 - AluY SINE Alu -9 302 1 425 358 37 59 chrX 11635643 11635964 -165338176 - L1MEd LINE L1 -5327 792 479 1066 109 25 35 chrX 11636053 11636255 -165337885 - L1MA4 LINE L1 -1 6299 6100 1865 166 0 7 chrX 11636742 11637043 -165337097 - AluSx SINE Alu -13 299 1 2164 132 0 3 chrX 11637065 11637376 -165336764 - AluSq SINE Alu -3 310 1 2316 102 7 0 chrX 11637448 11637751 -165336389 - AluSx SINE Alu -7 305 1 460 325 158 8 chrX 11637996 11638236 -165335904 + L2 LINE L2 2997 3272 0 626 221 115 67 chrX 11638331 11638584 -165335556 - L2 LINE L2 -411 2903 2639 567 263 75 74 chrX 11638816 11639085 -165335055 - L1M4 LINE L1 -1480 4666 4399 1743 196 0 0 chrX 11639085 11639386 -165334754 - AluJb SINE Alu -11 301 1 567 263 75 74 chrX 11639386 11639640 -165334500 - L1M4 LINE L1 -1747 4399 4147 1776 158 0 38 chrX 11639640 11639956 -165334184 - AluJb SINE Alu -8 304 1 567 263 75 74 chrX 11639956 11640009 -165334131 - L1M4 LINE L1 -1999 4147 4096 1306 179 47 47 chrX 11640009 11640306 -165333834 - AluJo SINE Alu -13 299 3 567 263 75 74 chrX 11640306 11640393 -165333747 - L1M4 LINE L1 -2050 4096 4000 293 275 50 17 chrX 11640396 11640516 -165333624 - L1ME LINE L1 -504 5617 5494 2539 33 3 10 chrX 11640552 11640856 -165333284 + AluY SINE Alu 1 302 -9 5354 186 91 38 chrX 11640963 11642772 -165331368 - L1MC3 LINE L1 -1 8039 6108 22 0 0 0 chrX 11643188 11643210 -165330930 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chrX 11643455 11643495 -165330645 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 1286 107 56 0 chrX 11643495 11643673 -165330467 - AluSg/x SINE Alu -31 279 92 603 185 67 15 chrX 11643767 11643902 -165330238 + MER104 DNA Tc2 38 179 -1 2087 98 14 0 chrX 11644718 11644994 -165329146 + AluSc SINE Alu 3 282 -27 333 0 0 0 chrX 11644994 11645031 -165329109 + (CA)n Simple_repeat Simple_repeat 2 38 0 407 109 47 0 chrX 11645031 11645095 -165329045 + AluSc SINE Alu 216 282 -27 465 19 0 0 chrX 11645095 11645149 -165328991 + (CA)n Simple_repeat Simple_repeat 2 55 0 968 123 0 20 chrX 11645772 11645918 -165328222 + FLAM_C SINE Alu 1 143 0 219 36 0 0 chrX 11646046 11646074 -165328066 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2147 107 4 0 chrX 11646076 11646357 -165327783 - AluSx SINE Alu -30 282 1 1743 121 153 0 chrX 11646843 11647156 -165326984 - MER46B DNA MER2_type 0 236 1 1780 156 79 24 chrX 11647312 11647640 -165326500 + MER7A DNA MER2_type 3 346 0 35 0 0 0 chrX 11648563 11648598 -165325542 + AT_rich Low_complexity Low_complexity 1 35 0 196 180 66 0 chrX 11648907 11648968 -165325172 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 25 31 0 0 chrX 11649086 11649118 -165325022 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 11650198 11650226 -165323914 + AT_rich Low_complexity Low_complexity 1 28 0 2294 107 0 0 chrX 11650327 11650627 -165323513 + AluSq SINE Alu 1 300 -13 2143 123 7 3 chrX 11650692 11651002 -165323138 - AluSx SINE Alu -1 311 1 468 289 188 15 chrX 11651614 11651811 -165322329 - MIR SINE MIR 0 262 32 339 85 0 0 chrX 11651858 11651905 -165322235 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1880 113 38 11 chrX 11651917 11652183 -165321957 - AluSx SINE Alu -39 273 1 826 106 0 18 chrX 11652456 11652569 -165321571 - FLAM_C SINE Alu -13 130 20 2004 115 10 7 chrX 11652643 11652938 -165321202 - AluSq SINE Alu -17 296 1 1947 81 11 11 chrX 11653652 11653913 -165320227 + AluSx SINE Alu 28 288 -24 21 71 0 0 chrX 11654034 11654076 -165320064 + AT_rich Low_complexity Low_complexity 1 42 0 216 373 69 10 chrX 11654140 11654242 -165319898 - L2 LINE L2 -7 3306 3199 2358 78 13 3 chrX 11654296 11654602 -165319538 - AluSc SINE Alu 0 309 1 844 205 138 0 chrX 11655063 11655258 -165318882 + MER58A DNA MER1_type 3 224 0 22 35 0 0 chrX 11655509 11655538 -165318602 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chrX 11656092 11656116 -165318024 + AT_rich Low_complexity Low_complexity 1 24 0 2215 92 7 7 chrX 11656416 11656708 -165317432 + AluSx SINE Alu 2 293 -19 574 75 12 0 chrX 11656808 11656888 -165317252 - MER53 DNA DNA 0 189 109 506 157 0 0 chrX 11657064 11657153 -165316987 - MER53 DNA DNA -96 93 5 342 310 8 76 chrX 11657370 11657575 -165316565 + MLT1L LTR MaLR 279 499 -116 2368 77 0 0 chrX 11657725 11658022 -165316118 + AluSq SINE Alu 1 297 -16 2003 118 28 0 chrX 11658184 11658473 -165315667 - AluSx SINE Alu -15 297 1 806 208 104 91 chrX 11658777 11658887 -165315253 + MIR SINE MIR 29 136 -126 2156 96 0 3 chrX 11658887 11659178 -165314962 + AluSx SINE Alu 1 290 -22 806 208 104 91 chrX 11659178 11659298 -165314842 + MIR SINE MIR 136 262 0 865 171 48 64 chrX 11659711 11659898 -165314242 + MLT1F1 LTR MaLR 73 256 -311 2068 119 3 10 chrX 11659898 11660210 -165313930 + AluSx SINE Alu 1 310 -2 997 153 5 26 chrX 11660210 11660400 -165313740 + AluJo SINE Alu 117 302 -10 1903 139 32 16 chrX 11660411 11660720 -165313420 + MLT1F1 LTR MaLR 254 567 0 279 203 224 37 chrX 11660729 11660846 -165313294 - MIR SINE MIR -103 105 12 196 250 188 0 chrX 11660855 11660935 -165313205 - MIR SINE MIR -12 250 156 974 162 0 28 chrX 11660977 11661156 -165312984 - AluSg/x SINE Alu -8 302 129 243 0 0 0 chrX 11661156 11661183 -165312957 + (TG)n Simple_repeat Simple_repeat 2 28 0 339 213 0 0 chrX 11661183 11661258 -165312882 + (TA)n Simple_repeat Simple_repeat 1 75 0 258 289 0 0 chrX 11661261 11661351 -165312789 - L1MC4 LINE L1 -1339 6703 6614 241 137 20 0 chrX 11661359 11661410 -165312730 - LTR66 LTR ERVL -171 439 388 478 151 14 0 chrX 11661438 11661511 -165312629 - AluJb SINE Alu -190 122 49 2244 112 0 0 chrX 11661620 11661932 -165312208 + AluSx SINE Alu 1 312 0 26 30 0 0 chrX 11662027 11662060 -165312080 + AT_rich Low_complexity Low_complexity 1 33 0 271 221 16 10 chrX 11662206 11662302 -165311838 + L1MC4 LINE L1 7828 8011 -31 1743 225 151 52 chrX 11662802 11662857 -165311283 + MLT1G1 LTR MaLR 5 53 -542 840 113 0 30 chrX 11662857 11662990 -165311150 - FLAM_C SINE Alu -4 129 1 1743 225 151 52 chrX 11662990 11663411 -165310729 + MLT1G1 LTR MaLR 53 542 -53 2443 55 0 3 chrX 11663411 11663719 -165310421 + AluY SINE Alu 1 307 -4 1743 225 151 52 chrX 11663719 11663779 -165310361 + MLT1G1 LTR MaLR 542 595 0 21 0 0 0 chrX 11663955 11663976 -165310164 + AT_rich Low_complexity Low_complexity 1 21 0 217 306 14 28 chrX 11664011 11664083 -165310057 - L2 LINE L2 -1 3271 3201 2070 161 27 47 chrX 11664321 11664671 -165309469 - MSTD LTR MaLR 0 396 54 1557 109 130 43 chrX 11664671 11664947 -165309193 - AluJo SINE Alu -12 300 1 2070 161 27 47 chrX 11664947 11665000 -165309140 - MSTD LTR MaLR -342 54 1 2005 116 14 0 chrX 11665287 11665579 -165308561 + AluSx SINE Alu 1 296 -16 349 294 47 39 chrX 11665716 11665971 -165308169 + L1PA10 LINE L1 5669 5925 -243 * 2039 145 3 20 chrX 11665748 11666092 -165308048 + L1MB7 LINE L1 5702 6039 -145 1232 136 0 0 chrX 11666098 11666342 -165307798 - AluJb SINE Alu 0 372 129 1850 114 3 56 chrX 11666347 11666653 -165307487 - AluSx SINE Alu -22 290 1 522 124 48 29 chrX 11666653 11666758 -165307382 + L1MB7 LINE L1 6019 6125 -59 479 103 90 26 chrX 11666760 11666838 -165307302 - AluJ/FRAM SINE Alu -14 298 216 356 65 32 16 chrX 11666840 11666902 -165307238 + L1MB8 LINE L1 6110 6172 -6 239 164 213 0 chrX 11666993 11667054 -165307086 + MER5A DNA MER1_type 9 82 -107 913 150 42 31 chrX 11667274 11667467 -165306673 + L1MB7 LINE L1 5990 6184 0 1036 197 14 40 chrX 11667553 11667776 -165306364 - MER20 DNA MER1_type 0 219 3 311 290 134 18 chrX 11667812 11668036 -165306104 - L3b LINE CR1 -199 1384 1135 2033 117 17 3 chrX 11668153 11668453 -165305687 - AluSx SINE Alu -8 304 1 874 49 0 0 chrX 11668453 11668555 -165305585 - AluSq/x SINE Alu -176 136 35 233 293 101 0 chrX 11668592 11668691 -165305449 - LTR33A LTR ERVL -115 408 300 2204 49 7 25 chrX 11668825 11669150 -165304990 - AluY SINE Alu 0 320 1 258 241 117 97 chrX 11669244 11669389 -165304751 - MIR SINE MIR -13 249 102 190 338 29 0 chrX 11669390 11669458 -165304682 + L2 LINE L2 3187 3256 -57 807 123 14 36 chrX 11669546 11669684 -165304456 - AluJo SINE Alu -177 135 1 231 36 0 0 chrX 11669697 11669725 -165304415 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 278 303 0 0 chrX 11669726 11669802 -165304338 - MIR SINE MIR -173 89 14 349 227 33 73 chrX 11669865 11670015 -165304125 + L1ME4a LINE L1 5976 6119 -2 2007 107 43 13 chrX 11670056 11670355 -165303785 + AluSg SINE Alu 1 308 -2 2119 99 14 0 chrX 11670368 11670661 -165303479 + AluSx SINE Alu 6 302 -10 1479 183 35 11 chrX 11670669 11670953 -165303187 + AluJb SINE Alu 1 291 -21 1027 147 0 0 chrX 11670963 11671119 -165303021 + FRAM SINE Alu 1 153 -23 513 248 220 6 chrX 11671399 11671698 -165302442 + LTR16A LTR ERVL 16 450 0 1022 130 12 0 chrX 11672121 11672282 -165301858 - AluSg/x SINE Alu -15 297 135 2138 104 0 19 chrX 11672283 11672624 -165301516 - AluSx SINE Alu 0 312 1 518 133 0 0 chrX 11672729 11672804 -165301336 - AluJ/FLAM SINE Alu -236 76 2 295 302 12 12 chrX 11672955 11673041 -165301099 + MIR SINE MIR 48 133 -75 1752 147 52 0 chrX 11673571 11673857 -165300283 + AluJb SINE Alu 1 301 -11 3362 86 13 20 chrX 11674085 11674475 -165299665 + MLT2A2 LTR ERVL 1 389 -64 2279 92 0 3 chrX 11674475 11674781 -165299359 - AluSx SINE Alu -7 305 1 3362 86 13 20 chrX 11674781 11674846 -165299294 + MLT2A2 LTR ERVL 389 453 0 2010 104 0 14 chrX 11674987 11675299 -165298841 - AluSx SINE Alu 0 308 1 1977 174 40 19 chrX 11675299 11675311 -165298829 + MLT1B LTR MaLR 10 20 -370 1571 174 0 14 chrX 11675311 11675599 -165298541 - AluJo SINE Alu -28 284 1 1977 174 40 19 chrX 11675599 11675959 -165298181 + MLT1B LTR MaLR 20 390 0 801 102 0 0 chrX 11676045 11676153 -165297987 - AluSg/x SINE Alu -11 301 194 1904 146 0 7 chrX 11676274 11676576 -165297564 - AluSx SINE Alu -12 300 1 1243 162 76 0 chrX 11676845 11677055 -165297085 - MLT1C LTR MaLR 0 467 242 318 67 50 50 chrX 11677059 11677100 -165297040 - MSTB LTR MaLR 0 426 383 2137 122 0 0 chrX 11677100 11677412 -165296728 + AluSx SINE Alu 1 312 0 318 67 50 50 chrX 11677412 11677430 -165296710 - MSTB LTR MaLR -42 384 367 1168 241 28 4 chrX 11678427 11678676 -165295464 + MIR SINE MIR 8 262 0 2393 64 0 10 chrX 11678892 11679190 -165294950 - AluSx SINE Alu -14 298 4 1149 182 0 0 chrX 11679409 11679612 -165294528 - AluJo SINE Alu -109 203 1 1981 112 7 10 chrX 11679774 11680068 -165294072 + AluSq SINE Alu 1 293 -20 2084 118 14 0 chrX 11680307 11680604 -165293536 - AluSx SINE Alu -11 301 1 354 314 29 14 chrX 11680676 11680816 -165293324 + MER87 LTR ERV1 400 541 0 271 363 38 42 chrX 11680945 11681182 -165292958 + L2 LINE L2 2571 2806 -508 2215 99 0 0 chrX 11681463 11681766 -165292374 - AluSx SINE Alu -9 303 1 2533 126 31 87 chrX 11682268 11682362 -165291778 + MSTC LTR MaLR 1 99 -329 1845 149 33 0 chrX 11682371 11682673 -165291467 + AluJo SINE Alu 1 312 0 737 157 0 25 chrX 11682673 11682784 -165291356 - FLAM_C SINE Alu -192 110 1 2533 126 31 87 chrX 11682784 11683140 -165291000 + MSTC LTR MaLR 99 426 -2 851 127 24 0 chrX 11683144 11683270 -165290870 + FLAM_C SINE Alu 5 133 0 1970 124 0 7 chrX 11683334 11683647 -165290493 - AluSx SINE Alu 0 311 1 443 277 6 31 chrX 11683725 11683884 -165290256 - LTR33 LTR ERVL 0 521 367 309 118 0 20 chrX 11683898 11683949 -165290191 + LTR41 LTR ERVL 24 73 -700 702 130 0 0 chrX 11683949 11684049 -165290091 + HY3 scRNA scRNA 1 100 -1 183 100 0 0 chrX 11684049 11684079 -165290061 + (A)n Simple_repeat Simple_repeat 1 30 0 496 202 207 80 chrX 11684079 11684116 -165290024 + LTR41 LTR ERVL 61 92 -681 2032 105 0 37 chrX 11684116 11684401 -165289739 + AluSx SINE Alu 1 274 -38 188 33 0 33 chrX 11684401 11684431 -165289709 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2032 105 0 37 chrX 11684431 11684469 -165289671 + AluSx SINE Alu 274 312 0 496 202 207 80 chrX 11684469 11684619 -165289521 + LTR41 LTR ERVL 92 272 -501 1054 247 50 34 chrX 11684684 11685040 -165289100 + LTR41 LTR ERVL 417 795 0 296 279 81 12 chrX 11685042 11685128 -165289012 - LTR33 LTR ERVL -157 364 273 249 247 39 26 chrX 11685193 11685269 -165288871 + LTR33 LTR ERVL 3 79 -442 482 215 47 19 chrX 11685269 11685376 -165288764 + MER63 DNA MER1_type 1 736 -326 290 206 183 38 chrX 11685407 11685538 -165288602 + LTR33 LTR ERVL 88 237 -284 650 125 17 203 chrX 11685674 11685702 -165288438 - MER53 DNA DNA 0 189 157 2300 43 0 0 chrX 11685702 11686037 -165288103 + AluY SINE Alu 1 335 0 650 125 17 203 chrX 11686037 11686140 -165288000 - MER53 DNA DNA -32 157 37 1854 84 18 131 chrX 11686140 11686278 -165287862 + L1MA3 LINE L1 5967 6119 -186 2115 100 0 0 chrX 11686278 11686568 -165287572 + AluSg1 SINE Alu 1 290 -19 1854 84 18 131 chrX 11686568 11686758 -165287382 + L1MA3 LINE L1 6119 6249 -56 2327 113 48 22 chrX 11686758 11687113 -165287027 + THE1B LTR MaLR 1 364 0 1854 84 18 131 chrX 11687113 11687165 -165286975 + L1MA3 LINE L1 6249 6305 0 650 125 17 203 chrX 11687165 11687261 -165286879 - MER53 DNA DNA -152 37 1 688 158 42 0 chrX 11687288 11687408 -165286732 - FRAM SINE Alu -3 173 49 297 0 0 0 chrX 11687449 11687482 -165286658 + (TTAAA)n Simple_repeat Simple_repeat 2 34 0 1722 146 14 0 chrX 11687491 11687772 -165286368 - AluJo SINE Alu -27 285 1 1895 81 0 0 chrX 11688364 11688611 -165285529 - AluSx SINE Alu -9 303 57 180 0 0 0 chrX 11688964 11688984 -165285156 + (TTG)n Simple_repeat Simple_repeat 2 21 0 198 156 0 0 chrX 11689040 11689085 -165285055 + (GTTTG)n Simple_repeat Simple_repeat 1 45 0 370 214 90 0 chrX 11689181 11689270 -165284870 - MER5A DNA MER1_type -84 105 9 1934 118 0 14 chrX 11689546 11689862 -165284278 + AluSx SINE Alu 1 312 0 2248 79 10 3 chrX 11690339 11690643 -165283497 - AluSx SINE Alu -5 307 2 2053 94 4 0 chrX 11691006 11691283 -165282857 - AluSx SINE Alu -6 306 29 1687 139 9 59 chrX 11691286 11691610 -165282530 - AluJo SINE Alu -4 308 1 931 262 31 66 chrX 11691661 11692085 -165282055 - MLT1K LTR MaLR 0 588 180 1661 213 129 48 chrX 11692106 11692503 -165281637 + MLT1F LTR MaLR 3 446 -96 1918 133 3 13 chrX 11692503 11692668 -165281472 - AluSx SINE Alu -14 298 136 2203 84 24 0 chrX 11692668 11692964 -165281176 - AluSg SINE Alu -7 303 1 1918 133 3 13 chrX 11692964 11693099 -165281041 - AluSx SINE Alu -176 136 1 1661 213 129 48 chrX 11693099 11693175 -165280965 + MLT1F LTR MaLR 446 514 -28 1575 118 24 52 chrX 11693404 11693544 -165280596 + AluJo SINE Alu 1 143 -166 2205 111 0 0 chrX 11693544 11693851 -165280289 + AluSp SINE Alu 1 307 -6 1575 118 24 52 chrX 11693851 11694027 -165280113 + AluJo SINE Alu 143 309 0 534 251 170 0 chrX 11694072 11694259 -165279881 + MIR SINE MIR 41 259 -3 1533 196 113 60 chrX 11694275 11694439 -165279701 + MLT1D LTR MaLR 2 156 -349 2261 101 0 0 chrX 11694439 11694745 -165279395 - AluSq SINE Alu -7 306 1 1533 196 113 60 chrX 11694745 11695001 -165279139 + MLT1D LTR MaLR 156 452 -53 1612 195 0 7 chrX 11695001 11695303 -165278837 - AluJo SINE Alu -12 300 1 1533 196 113 60 chrX 11695303 11695360 -165278780 + MLT1D LTR MaLR 452 505 0 2198 87 0 40 chrX 11695371 11695693 -165278447 - AluSq SINE Alu -4 309 1 2343 81 0 0 chrX 11696068 11696366 -165277774 - AluSq SINE Alu -15 298 1 2097 106 33 0 chrX 11697746 11698048 -165276092 - AluSx SINE Alu 0 312 1 2837 162 66 27 chrX 11698053 11698515 -165275625 + L1MCa LINE L1 1924 2439 -3987 2188 114 0 3 chrX 11698515 11698823 -165275317 + AluJb SINE Alu 1 307 -5 2837 162 66 27 chrX 11698823 11699157 -165274983 + L1MCa LINE L1 2439 2759 -3667 971 180 0 22 chrX 11699184 11699367 -165274773 + AluJb SINE Alu 112 290 -22 2219 187 30 8 chrX 11699372 11699843 -165274297 + L1M4 LINE L1 4373 4853 -1293 2188 100 3 3 chrX 11699844 11700144 -165273996 - AluSx SINE Alu -12 300 1 2064 118 0 0 chrX 11700264 11700552 -165273588 + AluSx SINE Alu 16 303 -9 833 232 56 47 chrX 11700837 11701054 -165273086 - L1ME3A LINE L1 -250 5920 5697 1827 138 10 10 chrX 11701054 11701350 -165272790 - AluJo SINE Alu -14 298 3 833 232 56 47 chrX 11701350 11701472 -165272668 - L1ME3A LINE L1 -473 5697 5578 2156 115 0 10 chrX 11701528 11701833 -165272307 - AluSx SINE Alu -10 302 1 438 197 51 0 chrX 11701841 11701952 -165272188 - L1ME3A LINE L1 -559 5605 5487 420 236 94 16 chrX 11701952 11702090 -165272050 + LTR50 LTR ERVL 39 195 -578 991 157 12 0 chrX 11702221 11702393 -165271747 - FRAM SINE Alu -2 174 1 1668 151 38 3 chrX 11702399 11702691 -165271449 - AluJo SINE Alu -10 302 1 2972 113 218 2 chrX 11702981 11703283 -165270857 - MER51A LTR ERV1 -9 625 390 1794 112 63 18 chrX 11703283 11703569 -165270571 + AluSg SINE Alu 9 307 -3 2972 113 218 2 chrX 11703569 11703780 -165270360 - MER51A LTR ERV1 -244 390 1 1718 239 27 20 chrX 11703781 11704366 -165269774 - MER51A-int LTR ERV1 0 7816 6548 2007 142 0 0 chrX 11704484 11704786 -165269354 - AluSx SINE Alu -10 302 1 1018 156 23 0 chrX 11704786 11704959 -165269181 + MER51-int LTR ERV1 6831 7704 -112 277 329 15 29 chrX 11705102 11705239 -165268901 - MER51A-int LTR ERV1 -869 6336 6202 2060 101 0 7 chrX 11705239 11705537 -165268603 - AluSg SINE Alu -13 297 2 942 136 34 11 chrX 11705538 11705567 -165268573 + L1MA10 LINE L1 6146 6173 -161 2408 81 0 0 chrX 11705567 11705875 -165268265 + AluSx SINE Alu 1 308 -4 942 136 34 11 chrX 11705875 11706022 -165268118 + L1MA10 LINE L1 6173 6326 -8 297 254 90 67 chrX 11706476 11706610 -165267530 + L2 LINE L2 3126 3262 -10 2351 97 0 0 chrX 11707028 11707326 -165266814 + AluSx SINE Alu 1 298 -14 4758 213 13 55 chrX 11707359 11708331 -165265809 - MSTD-int LTR MaLR -630 1105 188 1607 136 4 38 chrX 11708331 11708595 -165265545 - AluSx SINE Alu -14 298 44 4758 213 13 55 chrX 11708595 11708775 -165265365 - MSTD-int LTR MaLR -1547 188 2 1085 192 133 31 chrX 11708777 11709032 -165265108 - MSTD LTR MaLR 0 396 116 2020 89 63 7 chrX 11709048 11709350 -165264790 - AluSc SINE Alu 0 309 2 833 158 0 29 chrX 11709355 11709494 -165264646 - FRAM SINE Alu -21 155 21 249 264 0 0 chrX 11709494 11709547 -165264593 - MSTD LTR MaLR -271 103 51 1860 172 0 3 chrX 11709548 11709845 -165264295 - AluSx SINE Alu -16 296 1 598 234 163 0 chrX 11709892 11710033 -165264107 - MER5A DNA MER1_type 0 189 26 871 194 41 36 chrX 11710063 11710259 -165263881 + MER3 DNA MER1_type 9 205 -4 2472 86 3 3 chrX 11710372 11710685 -165263455 + AluSq SINE Alu 1 313 0 2122 82 4 0 chrX 11712022 11712291 -165261849 - AluSq SINE Alu -43 270 1 907 151 0 0 chrX 11712336 11712462 -165261678 - FLAM_C SINE Alu -6 127 2 2018 157 0 3 chrX 11712728 11713041 -165261099 - AluJo SINE Alu 0 312 1 963 201 17 6 chrX 11713041 11713220 -165260920 - MER5A DNA MER1_type -8 181 1 1674 191 81 99 chrX 11713227 11713541 -165260599 + L1MC5 LINE L1 7197 7515 -446 2160 110 3 13 chrX 11713541 11713841 -165260299 + AluSx SINE Alu 1 297 -15 1674 191 81 99 chrX 11713841 11713921 -165260219 + L1MC5 LINE L1 7515 7595 -366 2262 74 0 7 chrX 11713921 11714206 -165259934 - AluSc SINE Alu -25 284 2 1674 191 81 99 chrX 11714206 11714313 -165259827 + L1MC5 LINE L1 7595 7702 -259 2033 130 88 161 chrX 11714313 11714572 -165259568 + MLT1D LTR MaLR 1 277 -228 1558 195 0 3 chrX 11714572 11714854 -165259286 + AluJo SINE Alu 1 281 -31 2033 130 88 161 chrX 11714854 11715081 -165259059 + MLT1D LTR MaLR 277 445 -60 2045 103 41 24 chrX 11715081 11715239 -165258901 - AluSx SINE Alu -15 297 130 2366 77 0 46 chrX 11715239 11715563 -165258577 - AluSx SINE Alu -3 309 1 2045 103 41 24 chrX 11715563 11715696 -165258444 - AluSx SINE Alu -182 130 1 2033 130 88 161 chrX 11715696 11715753 -165258387 + MLT1D LTR MaLR 445 505 0 1674 191 81 99 chrX 11715753 11715776 -165258364 + L1MC5 LINE L1 7702 7724 -237 2373 80 0 29 chrX 11715776 11716089 -165258051 + AluSq SINE Alu 1 304 -9 1674 191 81 99 chrX 11716089 11716237 -165257903 + L1MC5 LINE L1 7724 7860 -101 2419 155 73 0 chrX 11716800 11717199 -165256941 - MSTA LTR MaLR 0 428 1 2357 95 0 0 chrX 11717394 11717700 -165256440 - AluSq SINE Alu -5 308 3 2053 115 28 0 chrX 11717703 11717991 -165256149 - AluSp SINE Alu -17 296 1 1139 231 58 32 chrX 11718283 11718474 -165255666 + L1ME3 LINE L1 5843 6047 -115 1332 158 39 84 chrX 11718474 11718785 -165255355 - AluJo SINE Alu -15 297 1 1139 231 58 32 chrX 11718785 11718905 -165255235 + L1ME3 LINE L1 6047 6162 0 182 375 10 10 chrX 11719182 11719278 -165254862 + L2 LINE L2 2726 2821 -493 1922 139 3 3 chrX 11719296 11719584 -165254556 - AluJb SINE Alu -24 288 1 1848 110 3 73 chrX 11720333 11720633 -165253507 - AluJb SINE Alu -17 295 17 240 287 139 41 chrX 11720820 11720942 -165253198 + L2 LINE L2 3137 3270 -2 2394 86 0 0 chrX 11721764 11722067 -165252073 - AluSq SINE Alu -10 303 1 251 291 13 25 chrX 11722467 11722546 -165251594 - L2 LINE L2 0 3272 3195 386 211 84 78 chrX 11722757 11722899 -165251241 + MIR SINE MIR 120 262 0 2658 46 0 3 chrX 11723373 11723680 -165250460 - AluSp SINE Alu -7 306 1 2264 76 0 3 chrX 11723707 11723995 -165250145 + AluY SINE Alu 1 287 -24 31 0 0 0 chrX 11725292 11725323 -165248817 + GC_rich Low_complexity Low_complexity 1 31 0 2111 122 0 3 chrX 11728762 11729058 -165245082 - AluSx SINE Alu -17 295 1 1039 147 13 0 chrX 11729292 11729449 -165244691 - AluSg/x SINE Alu -20 290 132 2250 115 0 10 chrX 11729449 11729754 -165244386 - AluSx SINE Alu -10 302 1 1826 113 16 68 chrX 11729754 11730064 -165244076 - AluSx SINE Alu -18 294 1 2220 113 0 19 chrX 11730225 11730536 -165243604 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 11731167 11731188 -165242952 + AT_rich Low_complexity Low_complexity 1 21 0 1855 127 99 0 chrX 11732292 11732575 -165241565 - AluSx SINE Alu -1 311 1 2244 117 0 0 chrX 11732583 11732882 -165241258 - AluSq SINE Alu -14 299 1 1646 124 3 150 chrX 11733976 11734330 -165239810 + AluJb SINE Alu 1 302 0 1930 144 7 3 chrX 11734359 11734644 -165239496 + AluJb SINE Alu 7 292 -20 357 268 71 39 chrX 11734713 11734840 -165239300 - L2 LINE L2 -1 3271 3141 392 215 59 129 chrX 11734917 11735103 -165239037 + MIR SINE MIR 77 249 -13 2224 143 60 17 chrX 11735234 11735583 -165238557 - THE1B LTR MaLR 0 364 1 34 19 0 19 chrX 11735840 11735866 -165238274 + AT_rich Low_complexity Low_complexity 1 26 -25 978 118 0 0 chrX 11735866 11735993 -165238147 - FLAM_C SINE Alu -6 127 1 34 19 0 19 chrX 11735993 11736018 -165238122 + AT_rich Low_complexity Low_complexity 26 51 0 828 125 0 23 chrX 11736059 11736226 -165237914 - FLAM_C SINE Alu 0 180 17 2233 97 3 6 chrX 11736254 11736565 -165237575 - AluSg SINE Alu 0 310 1 231 170 0 0 chrX 11736890 11736937 -165237203 + A-rich Low_complexity Low_complexity 1 47 0 2353 94 0 0 chrX 11737318 11737615 -165236525 - AluSx SINE Alu -15 297 1 23 0 0 0 chrX 11738442 11738465 -165235675 + AT_rich Low_complexity Low_complexity 1 23 0 2361 100 0 0 chrX 11739218 11739517 -165234623 - AluSx SINE Alu -13 299 1 1668 164 25 4 chrX 11739631 11739912 -165234228 - AluJb SINE Alu -25 287 1 295 279 78 39 chrX 11740058 11740237 -165233903 + L1ME4a LINE L1 5936 6121 0 1557 174 3 40 chrX 11740296 11740618 -165233522 - AluJo SINE Alu -2 310 1 2146 129 0 19 chrX 11741096 11741414 -165232726 - AluJb SINE Alu 0 312 1 813 132 78 42 chrX 11741414 11741574 -165232566 - L1MA7 LINE L1 -242 6049 5881 2256 117 0 0 chrX 11741574 11741883 -165232257 - AluSx SINE Alu -3 309 1 3071 221 30 28 chrX 11741883 11742708 -165231432 - L1MCa LINE L1 -3105 3321 2495 2225 92 0 14 chrX 11742711 11743005 -165231135 - AluSx SINE Alu -2 310 21 1282 155 56 0 chrX 11743013 11743265 -165230875 - L1MCa LINE L1 -3998 2428 2163 2398 78 0 3 chrX 11743282 11743590 -165230550 - AluY SINE Alu -4 307 1 2347 73 14 0 chrX 11743591 11743879 -165230261 - AluSc SINE Alu -14 295 4 1555 209 50 24 chrX 11743887 11744308 -165229832 - L1M4 LINE L1 -1231 4915 4484 2106 146 0 0 chrX 11744522 11744823 -165229317 - AluJb SINE Alu -11 301 1 686 129 0 0 chrX 11745021 11745114 -165229026 - AluJ/FLAM SINE Alu -218 94 2 187 304 185 22 chrX 11745268 11745403 -165228737 + L2 LINE L2 3116 3272 0 954 178 0 72 chrX 11745611 11745819 -165228321 - L1MB7 LINE L1 -19 6165 5973 369 281 141 7 chrX 11746119 11746254 -165227886 - MIR3 SINE MIR -6 202 50 239 186 0 124 chrX 11746627 11746724 -165227416 - L1MC5 LINE L1 -639 7322 7238 2013 147 0 13 chrX 11746737 11747051 -165227089 - AluJb SINE Alu -2 310 1 23 0 0 0 chrX 11747051 11747074 -165227066 + AT_rich Low_complexity Low_complexity 1 23 0 1552 189 0 15 chrX 11747088 11747352 -165226788 - AluJo SINE Alu -52 260 1 398 237 79 72 chrX 11747362 11747514 -165226626 - L1MC5 LINE L1 -722 7239 7087 2544 197 54 82 chrX 11747657 11748559 -165225581 + L1MC5 LINE L1 6891 7767 -194 2330 96 3 3 chrX 11748755 11749067 -165225073 - AluSx SINE Alu 0 312 1 589 249 34 67 chrX 11749069 11749278 -165224862 - L2 LINE L2 0 3313 3112 734 272 19 47 chrX 11749831 11749947 -165224193 + MIR SINE MIR 13 131 -131 2205 129 0 0 chrX 11749947 11750249 -165223891 - AluSx SINE Alu -10 302 1 734 272 19 47 chrX 11750249 11750389 -165223751 + MIR SINE MIR 131 262 0 1513 124 8 53 chrX 11750855 11751121 -165223019 - L1MB8 LINE L1 -5 6173 5920 452 211 0 11 chrX 11751206 11751296 -165222844 + L2 LINE L2 3188 3276 -37 232 211 14 84 chrX 11751283 11751354 -165222786 - L2 LINE L2 -39 3233 3168 * 1793 161 3 7 chrX 11751371 11751656 -165222484 - AluJo SINE Alu -28 284 1 2072 91 23 19 chrX 11752647 11752956 -165221184 - AluSq SINE Alu -3 310 1 612 266 65 15 chrX 11753142 11753341 -165220799 - MIR SINE MIR -26 236 28 2251 104 17 3 chrX 11753344 11753643 -165220497 - AluSx SINE Alu -9 303 1 213 229 21 0 chrX 11753819 11753867 -165220273 + (CATA)n Simple_repeat Simple_repeat 4 52 0 955 249 5 5 chrX 11753870 11754071 -165220069 - MER63A DNA MER1_type -2 208 8 269 305 107 42 chrX 11755427 11755748 -165218392 - L2 LINE L2 -293 2979 2641 2423 62 3 0 chrX 11757142 11757433 -165216707 - AluSq SINE Alu -21 292 1 695 242 65 26 chrX 11757958 11758189 -165215951 - L1ME3A LINE L1 -9 6161 5922 189 0 0 0 chrX 11758425 11758446 -165215694 + (T)n Simple_repeat Simple_repeat 1 21 0 384 268 32 114 chrX 11758893 11759113 -165215027 - L1MC4 LINE L1 -15 8027 7826 834 55 18 0 chrX 11759832 11759942 -165214198 - MLT1B LTR MaLR 0 390 279 1075 181 56 38 chrX 11760084 11760350 -165213790 - MLT1B LTR MaLR -119 271 1 2034 122 36 15 chrX 11760351 11760423 -165213717 - MLT1B LTR MaLR -46 344 275 1638 107 21 9 chrX 11760423 11760656 -165213484 - AluSg/x SINE Alu -4 308 73 * 1889 125 57 0 chrX 11760655 11760936 -165213204 - AluSx SINE Alu -15 297 1 2034 122 36 15 chrX 11760936 11761200 -165212940 - MLT1B LTR MaLR -395 4294967291 1 23 33 0 0 chrX 11762015 11762045 -165212095 + AT_rich Low_complexity Low_complexity 1 30 0 2745 13 0 7 chrX 11762185 11762494 -165211646 - AluY SINE Alu -4 307 1 302 310 129 52 chrX 11762542 11762829 -165211311 - L1ME3A LINE L1 -199 5922 5614 1411 108 5 0 chrX 11762837 11763023 -165211117 - AluSx SINE Alu -125 187 1 740 162 0 66 chrX 11763099 11763235 -165210905 - FRAM SINE Alu -13 163 37 209 256 0 0 chrX 11763238 11763277 -165210863 + L2 LINE L2 3225 3263 -50 219 167 0 0 chrX 11763368 11763410 -165210730 + (CATA)n Simple_repeat Simple_repeat 4 45 0 516 278 54 0 chrX 11763850 11764016 -165210124 - MIR SINE MIR -8 254 75 180 0 0 0 chrX 11764076 11764096 -165210044 + (CAA)n Simple_repeat Simple_repeat 2 21 0 362 130 0 200 chrX 11764303 11764418 -165209722 - Tigger7 DNA MER2_type -1 2486 2395 * 839 134 0 7 chrX 11764411 11764553 -165209587 - Tigger7 DNA MER2_type -208 525 385 452 319 156 52 chrX 11765518 11766232 -165207908 + L2 LINE L2 1694 2481 -833 1776 169 164 93 chrX 11766316 11767012 -165207128 + LTR1B LTR ERV1 1 745 -81 298 350 96 17 chrX 11767116 11767356 -165206784 + L2 LINE L2 2589 2847 -467 2755 114 74 22 chrX 11767394 11767976 -165206164 + MER4B LTR ERV1 1 779 0 388 355 40 26 chrX 11768216 11768368 -165205772 + L2 LINE L2 3116 3269 -3 1173 171 25 42 chrX 11768568 11768713 -165205427 + L1MB5 LINE L1 5440 5581 -593 2055 117 17 0 chrX 11768713 11769012 -165205128 + AluSx SINE Alu 1 304 -8 1173 171 25 42 chrX 11769012 11769106 -165205034 + L1MB5 LINE L1 5581 5675 -499 247 22 0 87 chrX 11769180 11769226 -165204914 + (CATA)n Simple_repeat Simple_repeat 4 45 0 2739 157 17 13 chrX 11769228 11769706 -165204434 + L1MB5 LINE L1 5695 6174 0 2105 136 0 3 chrX 11769765 11770067 -165204073 - AluJb SINE Alu -11 301 1 445 280 51 57 chrX 11770133 11770290 -165203850 - MIR SINE MIR -87 175 20 883 294 23 55 chrX 11770525 11770581 -165203559 + L1PA16 LINE L1 789 845 -6729 1918 146 31 7 chrX 11770581 11770875 -165203265 + AluJb SINE Alu 1 301 -11 883 294 23 55 chrX 11770875 11771257 -165202883 + L1PA16 LINE L1 845 1213 -6361 13994 206 27 14 chrX 11771919 11774126 -165200014 + L1PA16 LINE L1 2259 4435 -3169 2231 113 0 0 chrX 11774126 11774427 -165199713 + AluSx SINE Alu 1 301 -11 13994 206 27 14 chrX 11774427 11774538 -165199602 + L1PA16 LINE L1 4435 4543 -3061 2373 90 3 0 chrX 11774538 11774839 -165199301 + AluSp SINE Alu 1 302 -11 13994 206 27 14 chrX 11774839 11775052 -165199088 + L1PA16 LINE L1 4543 4752 -2852 2006 160 0 0 chrX 11775052 11775345 -165198795 + AluJb SINE Alu 1 293 -19 13994 206 27 14 chrX 11775345 11777455 -165196685 + L1PA16 LINE L1 4752 6988 -616 2332 84 7 3 chrX 11777455 11777754 -165196386 + AluSp SINE Alu 1 300 -13 13994 206 27 14 chrX 11777754 11778371 -165195769 + L1PA16 LINE L1 6988 7595 -9 23 33 0 0 chrX 11778721 11778751 -165195389 + AT_rich Low_complexity Low_complexity 1 30 0 29 47 0 0 chrX 11783383 11783426 -165190714 + AT_rich Low_complexity Low_complexity 1 43 0 331 279 81 25 chrX 11784667 11784828 -165189312 + L1ME4a LINE L1 5255 5424 -2384 548 283 140 22 chrX 11784849 11785249 -165188891 + L1ME4a LINE L1 5462 5908 -213 396 287 54 73 chrX 11785362 11785679 -165188461 - L1MC4a LINE L1 -1749 6059 5749 485 329 46 18 chrX 11786396 11786788 -165187352 + L1MEc LINE L1 1410 1812 -4584 7737 182 34 115 chrX 11786863 11789252 -165184888 + L1M1 LINE L1 -413 1783 -4644 * 9719 132 29 57 chrX 11789250 11790404 -165183736 + L1M1 LINE L1 3571 4756 -1827 1749 172 44 0 chrX 11790404 11790508 -165183632 + AluJb SINE Alu 3 101 -211 209 57 29 0 chrX 11790508 11790543 -165183597 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1749 172 44 0 chrX 11790543 11790735 -165183405 + AluJb SINE Alu 101 312 0 9719 132 29 57 chrX 11790735 11791271 -165182869 + L1M1 LINE L1 4756 5306 -1277 1569 108 138 11 chrX 11791271 11791540 -165182600 + AluSg1 SINE Alu 1 303 -6 9719 132 29 57 chrX 11791540 11791928 -165182212 + L1M1 LINE L1 5306 5704 -879 2187 100 0 17 chrX 11791928 11792227 -165181913 + AluY SINE Alu 1 294 -17 9719 132 29 57 chrX 11792227 11792431 -165181709 + L1M1 LINE L1 5704 5792 -791 1703 181 3 23 chrX 11792431 11792735 -165181405 - AluJo SINE Alu -14 298 1 9719 132 29 57 chrX 11792735 11792813 -165181327 + L1M1 LINE L1 5792 5871 -712 2192 122 0 0 chrX 11792814 11793109 -165181031 + AluJb SINE Alu 1 295 -17 2275 124 0 0 chrX 11793205 11793511 -165180629 + AluSx SINE Alu 1 306 -6 1771 182 100 80 chrX 11793571 11793812 -165180328 + L1M2 LINE L1 1449 1684 -4742 2222 128 0 0 chrX 11793812 11794124 -165180016 + AluSx SINE Alu 1 312 0 1771 182 100 80 chrX 11794124 11794186 -165179954 + L1M2 LINE L1 1684 1743 -4683 1719 184 0 17 chrX 11794186 11794480 -165179660 + AluJb SINE Alu 1 289 -23 1771 182 100 80 chrX 11794480 11794772 -165179368 + L1M2 LINE L1 1743 2815 -3611 189 107 0 0 chrX 11794829 11794857 -165179283 + (T)n Simple_repeat Simple_repeat 1 28 0 205 342 112 25 chrX 11794948 11795144 -165178996 + L2 LINE L2 1937 2149 -1165 224 250 36 36 chrX 11795163 11795247 -165178893 + MER5A DNA MER1_type 77 160 -29 267 350 10 21 chrX 11795452 11795549 -165178591 + L2 LINE L2 2225 2320 -994 1083 262 118 38 chrX 11795561 11796034 -165178106 - MLT1J LTR MaLR 0 511 1 247 250 0 0 chrX 11796327 11796379 -165177761 + L2 LINE L2 3183 3234 -79 1232 121 0 0 chrX 11796731 11796905 -165177235 - AluSq SINE Alu -8 305 132 405 207 141 16 chrX 11798153 11798274 -165175866 - L2 LINE L2 -1 3312 3177 21 0 0 0 chrX 11798450 11798471 -165175669 + AT_rich Low_complexity Low_complexity 1 21 0 360 227 73 27 chrX 11798834 11798944 -165175196 - MER5B DNA MER1_type -62 116 2 215 200 25 0 chrX 11799003 11799043 -165175097 - MIR SINE MIR -193 69 29 855 140 0 21 chrX 11799522 11799665 -165174475 - FLAM_C SINE Alu -3 140 1 1789 138 0 34 chrX 11799704 11799995 -165174145 + AluJb SINE Alu 14 294 -18 2002 134 7 10 chrX 11800390 11800522 -165173618 + AluJb SINE Alu 1 132 -180 2214 102 3 0 chrX 11800522 11800806 -165173334 + AluSg SINE Alu 13 297 -13 2002 134 7 10 chrX 11800806 11800979 -165173161 + AluJb SINE Alu 132 305 -7 484 99 0 44 chrX 11800980 11801071 -165173069 + (GGGA)n Simple_repeat Simple_repeat 4 90 0 1442 128 204 15 chrX 11801071 11801524 -165172616 + L1MA4 LINE L1 5192 5769 -534 * 5123 99 19 34 chrX 11801512 11801623 -165172517 + L1PA15 LINE L1 5334 5445 -720 2021 120 31 3 chrX 11801623 11801915 -165172225 + AluSx SINE Alu 1 300 -12 5123 99 19 34 chrX 11801915 11802648 -165171492 + L1PA15 LINE L1 5445 6165 0 835 69 69 0 chrX 11802650 11802781 -165171359 + L1MA4 LINE L1 5743 5882 -418 2512 69 7 0 chrX 11802957 11803262 -165170878 - AluSx SINE Alu -5 307 1 278 50 17 50 chrX 11803262 11803322 -165170818 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 721 150 0 33 chrX 11803326 11803446 -165170694 - FLAM_A SINE Alu -17 116 1 507 285 184 17 chrX 11803525 11803813 -165170327 + L2 LINE L2 2922 3257 -56 2873 230 114 36 chrX 11803908 11804477 -165169663 - L2 LINE L2 0 3313 2790 2152 129 0 3 chrX 11804477 11804788 -165169352 - AluSq SINE Alu -3 310 1 2873 230 114 36 chrX 11804788 11804963 -165169177 - L2 LINE L2 -523 2790 2630 1289 179 78 87 chrX 11804963 11805310 -165168830 + MER2 DNA MER2_type 1 344 0 2873 230 114 36 chrX 11805310 11805616 -165168524 - L2 LINE L2 -683 2630 2171 286 171 224 0 chrX 11805624 11805669 -165168471 - MER20 DNA MER1_type -1 218 184 420 71 0 0 chrX 11805669 11805725 -165168415 + (TG)n Simple_repeat Simple_repeat 2 57 0 286 171 224 0 chrX 11805725 11805755 -165168385 - MER20 DNA MER1_type -35 184 126 2745 68 11 0 chrX 11805893 11806244 -165167896 + THE1A LTR MaLR 1 355 0 202 27 0 54 chrX 11806540 11806577 -165167563 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 516 165 0 82 chrX 11806581 11806678 -165167462 - AluJb SINE Alu -34 278 190 200 202 32 128 chrX 11806851 11806945 -165167195 - MIR SINE MIR -4 258 174 * 538 329 96 31 chrX 11806903 11807289 -165166851 + L2 LINE L2 1961 2371 -943 221 318 142 67 chrX 11807325 11807503 -165166637 - L2 LINE L2 -1 3271 3065 2150 122 0 31 chrX 11807503 11807824 -165166316 + AluSx SINE Alu 1 311 -1 221 318 142 67 chrX 11807824 11807912 -165166228 - L2 LINE L2 -207 3065 2985 344 314 144 38 chrX 11808023 11808224 -165165916 - L2 LINE L2 -500 2814 2583 1363 197 122 55 chrX 11808224 11808641 -165165499 + MER65A LTR ERV1 1 445 0 344 314 144 38 chrX 11808641 11808675 -165165465 - L2 LINE L2 -731 2583 2554 389 250 54 108 chrX 11808770 11808803 -165165337 + L1MB2 LINE L1 5296 5329 -2479 2147 113 0 0 chrX 11808803 11809103 -165165037 + AluSx SINE Alu 1 300 -12 389 250 54 108 chrX 11809103 11809329 -165164811 + L1MB2 LINE L1 5329 5541 -2267 1699 137 47 34 chrX 11809343 11809702 -165164438 + Charlie3 DNA MER1_type 1 2712 0 639 167 125 0 chrX 11809780 11809900 -165164240 - AluJo SINE Alu -176 136 2 1890 102 0 66 chrX 11810055 11810359 -165163781 + AluSx SINE Alu 5 288 -24 2827 108 38 17 chrX 11810378 11810795 -165163345 + MSTB LTR MaLR 1 426 0 1909 148 0 3 chrX 11810795 11811093 -165163047 - AluJo SINE Alu -15 297 1 1088 221 81 68 chrX 11811097 11811179 -165162961 + HAL1 LINE L1 1499 1578 -929 2088 124 0 0 chrX 11811179 11811477 -165162663 - AluSx SINE Alu -14 298 1 1088 221 81 68 chrX 11811477 11811778 -165162362 + HAL1 LINE L1 1578 1887 -620 1473 255 175 19 chrX 11811858 11812560 -165161580 + HAL1 LINE L1 1690 2501 -6 1931 138 0 25 chrX 11813341 11813697 -165160443 + AluJo SINE Alu 1 348 0 1953 116 27 0 chrX 11815066 11815359 -165158781 + AluSx SINE Alu 1 301 -11 25 31 0 0 chrX 11815489 11815521 -165158619 + AT_rich Low_complexity Low_complexity 1 32 0 2269 91 3 0 chrX 11815883 11816179 -165157961 + AluSq SINE Alu 1 297 -16 1620 134 67 16 chrX 11816361 11816675 -165157465 + L1MB2 LINE L1 5842 6171 0 2016 123 34 0 chrX 11816848 11817140 -165157000 - AluSx SINE Alu -10 302 1 240 242 61 61 chrX 11817203 11817302 -165156838 + L3 LINE CR1 1364 1462 -115 250 228 35 0 chrX 11819290 11819347 -165154793 - L2 LINE L2 -10 3262 3204 337 297 61 68 chrX 11823359 11823465 -165150675 - MIR SINE MIR 0 262 156 3100 134 125 10 chrX 11823465 11824048 -165150092 + MER39B LTR ERV1 3 652 -1 337 297 61 68 chrX 11824048 11824089 -165150051 - MIR SINE MIR -106 156 116 563 206 63 0 chrX 11824332 11824458 -165149682 - MIR3 SINE MIR -13 195 62 248 217 159 0 chrX 11826463 11826532 -165147608 + L1ME4a LINE L1 5975 6054 -67 2141 118 0 0 chrX 11826634 11826930 -165147210 + AluSx SINE Alu 1 296 -16 251 328 67 0 chrX 11827152 11827271 -165146869 + L2 LINE L2 3132 3258 -14 524 212 151 7 chrX 11827317 11827463 -165146677 + MER91A DNA MER1_type 30 196 0 2111 101 0 42 chrX 11829411 11829718 -165144422 - AluSx SINE Alu -18 294 1 1025 113 27 7 chrX 11830457 11830607 -165143533 + L1MA4A LINE L1 5800 5952 -351 276 321 64 0 chrX 11831030 11831139 -165143001 + L2 LINE L2 3196 3311 -2 511 346 137 14 chrX 11831147 11831705 -165142435 - L2 LINE L2 -10 3262 2616 1224 230 113 56 chrX 11831823 11832333 -165141807 + MLT1G1 LTR MaLR 23 595 0 1693 148 20 27 chrX 11832949 11833246 -165140894 - AluJo SINE Alu -17 295 1 2431 62 0 0 chrX 11833256 11833561 -165140579 - AluY SINE Alu -6 305 1 296 180 22 67 chrX 11834596 11834685 -165139455 + LTR33A LTR ERVL 439 523 0 324 294 209 21 chrX 11836121 11836308 -165137832 - MIR SINE MIR -37 225 4 1755 158 0 16 chrX 11836331 11836634 -165137506 + AluJo SINE Alu 3 300 -12 212 229 16 66 chrX 11836865 11836926 -165137214 + L2 LINE L2 3205 3262 -10 917 135 0 0 chrX 11837411 11837544 -165136596 - FLAM_C SINE Alu 0 133 1 201 39 0 0 chrX 11837681 11837707 -165136433 + (TG)n Simple_repeat Simple_repeat 1 26 0 391 262 12 0 chrX 11837945 11838029 -165136111 + Charlie8 DNA MER1_type 9 93 -2324 2111 102 14 0 chrX 11839408 11839692 -165134448 - AluSx SINE Alu -24 288 1 1031 187 13 40 chrX 11840279 11840504 -165133636 - MER20 DNA MER1_type 0 219 1 1017 206 23 23 chrX 11840514 11840732 -165133408 + MER58A DNA MER1_type 3 220 -4 3643 104 9 2 chrX 11841083 11841648 -165132492 + L1PB1 LINE L1 5608 6176 0 1979 114 0 0 chrX 11841656 11841973 -165132167 + AluSx SINE Alu 1 317 0 225 211 0 0 chrX 11842463 11842515 -165131625 + GA-rich Low_complexity Low_complexity 3 54 0 230 258 215 12 chrX 11842978 11843141 -165130999 + L1ME4a LINE L1 5690 5885 -236 249 197 0 28 chrX 11843239 11843310 -165130830 + L1ME4a LINE L1 6047 6115 -6 200 291 254 5 chrX 11843726 11843939 -165130201 + L3 LINE CR1 1111 1376 -201 1036 202 71 79 chrX 11844115 11844488 -165129652 + MLT1A1 LTR MaLR 1 426 0 186 209 0 0 chrX 11845031 11845074 -165129066 + GA-rich Low_complexity Low_complexity 2 44 0 1361 156 90 35 chrX 11845528 11845816 -165128324 + AluJo SINE Alu 1 304 -8 234 213 180 0 chrX 11846203 11846264 -165127876 + MIR3 SINE MIR 129 200 -8 706 309 99 22 chrX 11846668 11847082 -165127058 - MARNA DNA Mariner -132 454 9 2177 92 3 0 chrX 11847169 11847464 -165126676 + AluSx SINE Alu 1 296 -16 636 268 22 22 chrX 11847953 11848132 -165126008 + MIR3 SINE MIR 15 193 -15 377 320 22 39 chrX 11848266 11848444 -165125696 + MIR3 SINE MIR 16 190 -18 2369 168 37 14 chrX 11848492 11848980 -165125160 + L1MB8 LINE L1 5676 6174 -4 2146 115 0 0 chrX 11849506 11849802 -165124338 + AluSx SINE Alu 1 296 -16 2138 115 0 3 chrX 11850364 11850668 -165123472 - AluSq SINE Alu -10 303 1 198 0 0 0 chrX 11851203 11851225 -165122915 + (TA)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chrX 11851249 11851281 -165122859 + AT_rich Low_complexity Low_complexity 1 32 0 2204 103 0 0 chrX 11851324 11851624 -165122516 - AluSq SINE Alu -13 300 1 294 295 33 0 chrX 11851653 11851775 -165122365 - L1ME4a LINE L1 -202 5919 5794 229 214 0 0 chrX 11851880 11851922 -165122218 - L1ME4a LINE L1 -459 5662 5621 264 246 0 91 chrX 11851983 11852093 -165122047 - L1ME4a LINE L1 -673 5489 5390 213 39 0 0 chrX 11852169 11852195 -165121945 + (TG)n Simple_repeat Simple_repeat 1 26 0 2004 122 0 0 chrX 11852195 11852474 -165121666 - AluSx SINE Alu -33 279 1 741 220 129 35 chrX 11852537 11852769 -165121371 + MIR SINE MIR 9 262 0 635 301 0 0 chrX 11853616 11853779 -165120361 - MLT1I LTR MaLR -24 385 223 2483 126 38 43 chrX 11853791 11854212 -165119928 - MSTA LTR MaLR -9 419 1 683 255 54 0 chrX 11854312 11854496 -165119644 + L1M4 LINE L1 4778 4971 -1175 420 227 0 0 chrX 11854497 11854572 -165119568 - L1ME4a LINE L1 -1566 4580 4506 214 253 242 11 chrX 11854601 11854696 -165119444 + L2 LINE L2 3197 3313 0 2227 96 0 7 chrX 11854842 11855145 -165118995 + AluSg SINE Alu 1 301 -9 379 267 176 16 chrX 11856292 11856479 -165117661 - MIR SINE MIR -8 254 38 204 319 43 21 chrX 11856629 11856723 -165117417 + L2 LINE L2 2996 3091 -181 1149 259 25 6 chrX 11856733 11857054 -165117086 + MER46C DNA MER2_type 6 332 -6 2088 116 0 3 chrX 11857055 11857366 -165116774 + AluSx SINE Alu 1 310 -2 197 259 17 35 chrX 11857838 11857896 -165116244 + MIR SINE MIR 105 161 -101 205 132 53 0 chrX 11858640 11858678 -165115462 + G-rich Low_complexity Low_complexity 5 44 0 222 254 0 14 chrX 11859167 11859238 -165114902 + C-rich Low_complexity Low_complexity 5 74 0 731 270 49 26 chrX 11859941 11860167 -165113973 + MIR SINE MIR 19 249 -13 262 270 0 40 chrX 11860291 11860365 -165113775 + L2 LINE L2 3243 3313 0 28 29 0 0 chrX 11861694 11861729 -165112411 + AT_rich Low_complexity Low_complexity 1 35 0 2263 116 0 0 chrX 11861816 11862127 -165112013 + AluSx SINE Alu 1 311 -1 676 168 0 16 chrX 11862413 11862538 -165111602 - FLAM_A SINE Alu -7 135 13 192 40 0 0 chrX 11862638 11862663 -165111477 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1597 177 3 3 chrX 11863430 11863712 -165110428 - AluJo SINE Alu -30 282 1 598 271 147 12 chrX 11864551 11864721 -165109419 + MER91A DNA MER1_type 4 196 0 321 246 271 0 chrX 11916744 11916866 -165057274 - MIR3 SINE MIR -6 202 48 600 261 97 62 chrX 11917898 11918250 -165055890 + L2 LINE L2 2947 3310 -3 235 341 12 0 chrX 11918655 11918740 -165055400 - L2 LINE L2 -36 3277 3192 1290 274 26 38 chrX 11919238 11919690 -165054450 - MLT1J2 LTR MaLR -3 447 1 536 219 0 9 chrX 11921769 11921883 -165052257 + MER3 DNA MER1_type 57 122 -87 1741 183 24 5 chrX 11921891 11922262 -165051878 + MER3 DNA MER1_type 2234 2611 0 1739 159 19 0 chrX 11923125 11923395 -165050745 + AluJb SINE Alu 1 275 -37 312 300 22 0 chrX 11923401 11923491 -165050649 - L1MC4 LINE L1 -1339 6703 6612 * 338 221 0 53 chrX 11923415 11923510 -165050630 + L1MC4 LINE L1 6614 6703 -1339 236 133 0 0 chrX 11923541 11923586 -165050554 - LTR66 LTR ERVL -171 439 395 * 242 111 0 0 chrX 11923548 11923593 -165050547 + LTR66 LTR ERVL 395 439 -171 1836 112 0 0 chrX 11925340 11925582 -165048558 - AluSq SINE Alu -71 242 1 477 277 29 0 chrX 11926021 11926158 -165047982 + MIR SINE MIR 114 254 -8 417 299 82 31 chrX 11929210 11929404 -165044736 + L2 LINE L2 2892 3095 -177 2041 136 13 0 chrX 11930458 11930766 -165043374 + AluJo SINE Alu 1 312 0 936 173 23 51 chrX 11930843 11931057 -165043083 - MER3 DNA MER1_type 0 209 2 291 303 50 17 chrX 11931263 11931382 -165042758 + L2 LINE L2 3189 3311 -2 923 204 31 26 chrX 11931594 11931820 -165042320 + MIR SINE MIR 33 259 -3 488 255 38 25 chrX 11934241 11934398 -165039742 - MER103 DNA DNA 0 166 8 360 0 0 0 chrX 11934404 11934444 -165039696 + (TG)n Simple_repeat Simple_repeat 1 40 0 31 44 0 0 chrX 11934607 11934652 -165039488 + AT_rich Low_complexity Low_complexity 1 45 0 1799 177 6 22 chrX 11935527 11935838 -165038302 + AluJo SINE Alu 1 306 -6 285 111 0 0 chrX 11935844 11935889 -165038251 + L1MA7 LINE L1 6243 6287 -4 231 103 0 0 chrX 11936437 11936476 -165037664 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 185 271 118 0 chrX 11936752 11936837 -165037303 + MIR SINE MIR 79 173 -89 303 313 9 18 chrX 11937828 11937940 -165036200 + CT-rich Low_complexity Low_complexity 3 113 0 324 64 0 0 chrX 11938354 11938401 -165035739 + (TC)n Simple_repeat Simple_repeat 1 47 0 358 285 16 16 chrX 11938672 11938795 -165035345 - MER5A DNA MER1_type -4 185 63 22 80 0 0 chrX 11939014 11939064 -165035076 + AT_rich Low_complexity Low_complexity 1 50 0 733 152 80 7 chrX 11939070 11939221 -165034919 + L1MC3 LINE L1 7618 7779 -6 2094 247 98 9 chrX 11939256 11939892 -165034248 + L1ME3A LINE L1 5453 6144 -26 693 306 42 4 chrX 11939953 11940193 -165033947 + MIR SINE MIR 6 252 -10 2548 55 0 19 chrX 11941247 11941555 -165032585 + AluY SINE Alu 1 302 -9 865 191 155 58 chrX 11941595 11941976 -165032164 + MLT1J1 LTR MaLR 11 450 0 1364 236 88 24 chrX 11943578 11943989 -165030151 + LTR16A1 LTR ERVL 1 437 -20 209 98 24 0 chrX 11944378 11944419 -165029721 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 445 281 50 25 chrX 11944478 11944638 -165029502 + MIR SINE MIR 82 245 -17 273 210 0 0 chrX 11944782 11944844 -165029296 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 449 297 87 31 chrX 11945346 11945575 -165028565 - MIR SINE MIR -20 242 1 253 256 62 31 chrX 11945717 11945846 -165028294 - L1MC5 LINE L1 -52 7909 7777 243 0 0 0 chrX 11946634 11946661 -165027479 + (CA)n Simple_repeat Simple_repeat 2 28 0 1273 298 62 24 chrX 11947971 11948589 -165025551 - L1ME4a LINE L1 -24 6097 5457 5893 82 4 31 chrX 11948661 11949506 -165024634 + L1PB1 LINE L1 5329 6150 -1 542 302 55 8 chrX 11949563 11949798 -165024342 - MIR SINE MIR -15 247 2 277 208 20 119 chrX 11949934 11950035 -165024105 - MIR3 SINE MIR -30 178 88 184 311 0 40 chrX 11950163 11950237 -165023903 + L2 LINE L2 3014 3084 -188 228 180 11 124 chrX 11950347 11950436 -165023704 + MLT1J2 LTR MaLR 57 135 -315 512 246 30 22 chrX 11950479 11950613 -165023527 + MLT1L LTR MaLR 317 451 -164 321 293 40 0 chrX 11952509 11952608 -165021532 - MIR SINE MIR -126 136 34 321 26 0 0 chrX 11952903 11952941 -165021199 + (TTA)n Simple_repeat Simple_repeat 2 39 0 584 161 18 0 chrX 11953364 11953476 -165020664 - MIR SINE MIR -72 190 77 828 138 0 0 chrX 11953551 11953667 -165020473 + FLAM_C SINE Alu 3 118 -25 400 255 174 0 chrX 11955359 11955520 -165018620 + L2 LINE L2 3115 3303 -10 398 291 8 0 chrX 11955865 11955982 -165018158 - MIR SINE MIR -110 152 35 611 203 68 82 chrX 11958142 11958349 -165015791 + L2 LINE L2 3109 3312 -1 723 210 185 17 chrX 11958559 11958797 -165015343 - LTR16C LTR ERVL 0 491 214 203 125 25 0 chrX 11959183 11959223 -165014917 + GA-rich Low_complexity Low_complexity 2 42 0 237 139 0 0 chrX 11959694 11959737 -165014403 + (CA)n Simple_repeat Simple_repeat 2 44 0 307 183 0 33 chrX 11959829 11959889 -165014251 - MIR SINE MIR -1 261 204 720 293 30 10 chrX 11960075 11960273 -165013867 - MIR SINE MIR -46 216 15 263 140 70 53 chrX 11960629 11960686 -165013454 + L2 LINE L2 3215 3272 0 672 297 87 58 chrX 11962903 11963644 -165010496 - L2 LINE L2 -10 3303 2544 325 176 118 0 chrX 11963746 11963814 -165010326 + MIR SINE MIR 106 181 -81 37717 92 8 11 chrX 11963840 11970024 -165004116 + L1PA6 LINE L1 11 6173 0 194 274 164 0 chrX 11970227 11970300 -165003840 - MIR SINE MIR -1 261 177 346 241 17 35 chrX 11970817 11970991 -165003149 + CT-rich Low_complexity Low_complexity 2 172 0 239 275 11 55 chrX 11971997 11972088 -165002052 + MIR3 SINE MIR 109 195 -13 180 111 0 0 chrX 11972089 11972116 -165002024 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 336 321 9 0 chrX 11972125 11972234 -165001906 - L2 LINE L2 -19 3253 3144 1962 114 10 13 chrX 11972398 11972696 -165001444 + AluJb SINE Alu 10 306 -6 1416 209 71 77 chrX 11973201 11973679 -165000461 - MLT1H LTR MaLR -2 547 73 24 0 0 0 chrX 11973679 11973703 -165000437 + AT_rich Low_complexity Low_complexity 1 24 0 288 205 13 51 chrX 11973922 11974000 -165000140 + MER116 DNA Mariner 6 80 0 1192 192 19 0 chrX 11974238 11974446 -164999694 + MER20 DNA MER1_type 1 212 -7 236 195 0 0 chrX 11975345 11975386 -164998754 - L2 LINE L2 -11 3261 3221 226 250 0 0 chrX 11975849 11975921 -164998219 - L1ME2 LINE L1 0 6164 6093 1519 255 60 13 chrX 11976095 11976562 -164997578 + LTR16C LTR ERVL 1 489 -2 414 0 0 0 chrX 11977051 11977097 -164997043 + (TG)n Simple_repeat Simple_repeat 1 46 0 207 0 0 0 chrX 11978256 11978279 -164995861 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1134 278 76 11 chrX 11978664 11979046 -164995094 - LTR16C LTR ERVL -9 482 76 238 188 0 0 chrX 11979717 11979765 -164994375 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 479 281 61 57 chrX 11979938 11980166 -164993974 - MIR SINE MIR -15 247 19 1894 223 60 91 chrX 11980545 11981147 -164992993 + MLT1E LTR MaLR 11 593 0 198 0 0 0 chrX 11981323 11981345 -164992795 + (TA)n Simple_repeat Simple_repeat 2 23 0 312 303 61 20 chrX 11981372 11981471 -164992669 - LTR16C LTR ERVL -239 252 150 387 0 0 0 chrX 11981519 11981562 -164992578 + (CA)n Simple_repeat Simple_repeat 2 44 0 316 305 161 17 chrX 11981572 11981671 -164992469 - L1ME2 LINE L1 -207 5963 5880 210 37 0 0 chrX 11981671 11981698 -164992442 + (TA)n Simple_repeat Simple_repeat 2 28 0 316 305 161 17 chrX 11981698 11981772 -164992368 - L1ME2 LINE L1 -290 5880 5765 428 184 0 0 chrX 11981800 11981876 -164992264 + MER116 DNA Mariner 5 80 0 605 312 98 9 chrX 11981969 11982184 -164991956 + MIR SINE MIR 26 259 -3 838 231 16 0 chrX 11983122 11983308 -164990832 + MER5A DNA MER1_type 1 189 0 1664 69 0 5 chrX 11983605 11983822 -164990318 + L1PA7 LINE L1 5939 6154 0 548 183 0 0 chrX 11985592 11985685 -164988455 + MER81 DNA DNA 20 112 -2 492 212 189 8 chrX 11985754 11985886 -164988254 - MER5A DNA MER1_type 0 189 34 388 281 99 57 chrX 11986122 11986385 -164987755 + MLT1J LTR MaLR 238 511 0 308 239 284 9 chrX 11986424 11986533 -164987607 - MER91C DNA MER1_type -1 139 1 539 283 152 5 chrX 11986546 11986737 -164987403 + MIR SINE MIR 31 249 -13 1352 238 112 20 chrX 11987367 11988030 -164986110 - L2 LINE L2 -1 3312 2585 183 80 0 0 chrX 11989512 11989537 -164984603 + (T)n Simple_repeat Simple_repeat 1 25 0 348 331 40 11 chrX 11989945 11990120 -164984020 + (CATG)n Simple_repeat Simple_repeat 1 180 0 602 190 110 116 chrX 11990571 11990955 -164983185 + MLT1H LTR MaLR 108 555 0 313 291 13 0 chrX 11991208 11991287 -164982853 - MIR3 SINE MIR -34 174 95 213 152 0 0 chrX 11991423 11991456 -164982684 + L2 LINE L2 3223 3255 -17 403 250 93 9 chrX 11992026 11992134 -164982006 + L2 LINE L2 3156 3272 0 1228 250 187 13 chrX 11992242 11992817 -164981323 + LTR50 LTR ERVL 5 521 -2 225 208 62 0 chrX 11993020 11993068 -164981072 + L2 LINE L2 3263 3313 0 652 254 161 30 chrX 11993094 11993443 -164980697 + MLT1J1 LTR MaLR 45 407 -2 2017 109 0 3 chrX 11993860 11994144 -164979996 + AluSx SINE Alu 3 285 -27 207 0 0 0 chrX 11994147 11994170 -164979970 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 256 225 109 29 chrX 11994173 11994311 -164979829 - L1ME4a LINE L1 -6 6115 5967 756 291 57 24 chrX 11994351 11994598 -164979542 + MIR SINE MIR 8 262 0 690 226 138 0 chrX 11995469 11995628 -164978512 + MER5A DNA MER1_type 9 189 0 656 306 48 5 chrX 11995694 11995900 -164978240 - MIR SINE MIR -1 261 47 225 0 0 0 chrX 11995956 11995981 -164978159 + (TC)n Simple_repeat Simple_repeat 2 26 0 437 203 149 27 chrX 11996704 11996852 -164977288 - LTR16A1 LTR ERVL -113 344 179 432 0 0 0 chrX 11996855 11996903 -164977237 + (TG)n Simple_repeat Simple_repeat 2 49 0 804 296 51 14 chrX 11997378 11997578 -164976562 + MIR SINE MIR 29 239 -23 1754 166 27 0 chrX 11997578 11997873 -164976267 - AluJb SINE Alu -9 303 1 804 296 51 14 chrX 11997873 11997888 -164976252 + MIR SINE MIR 239 252 -10 196 311 49 0 chrX 11998523 11998584 -164975556 - MIR SINE MIR -68 140 77 636 290 178 30 chrX 11998593 11998931 -164975209 - MLT1I LTR MaLR -2 407 20 1347 261 42 61 chrX 11999138 11999718 -164974422 - L2 LINE L2 -2 3311 2748 933 280 127 6 chrX 12000035 12000396 -164973744 + LTR16C LTR ERVL 87 491 0 282 291 23 0 chrX 12000409 12000495 -164973645 + MIR3 SINE MIR 95 182 -26 2272 61 0 0 chrX 12002278 12002597 -164971543 - AluY SINE Alu 0 319 1 1744 164 0 20 chrX 12002788 12003087 -164971053 + AluJo SINE Alu 1 293 -19 393 262 77 18 chrX 12003219 12003387 -164970753 + MER20B DNA MER1_type 2 179 -604 1440 265 75 5 chrX 12003492 12003892 -164970248 - LTR16C LTR ERVL -61 430 3 234 0 0 0 chrX 12004547 12004573 -164969567 + (CA)n Simple_repeat Simple_repeat 1 26 0 385 374 33 6 chrX 12004768 12004950 -164969190 - MIR SINE MIR -28 234 48 1805 141 14 17 chrX 12005085 12005382 -164968758 + AluJo SINE Alu 1 296 -16 636 284 54 0 chrX 12005666 12005870 -164968270 - MIR SINE MIR -1 261 47 260 253 96 24 chrX 12006270 12006353 -164967787 + L2 LINE L2 3167 3255 -17 312 298 221 43 chrX 12006592 12007012 -164967128 - L2 LINE L2 -5 3308 2814 228 203 0 62 chrX 12007630 12007694 -164966446 + MER5A DNA MER1_type 1 60 -129 790 181 10 98 chrX 12007696 12007889 -164966251 + AluJo SINE Alu 123 298 -14 570 285 0 15 chrX 12007893 12008023 -164966117 + MER5A DNA MER1_type 62 189 0 619 184 135 0 chrX 12008031 12008192 -164965948 - MER5A DNA MER1_type 0 189 4 290 196 39 20 chrX 12009586 12009688 -164964452 + GA-rich Low_complexity Low_complexity 3 106 0 993 159 55 28 chrX 12010391 12010573 -164963567 - MER20 DNA MER1_type -17 202 16 274 169 78 26 chrX 12011804 12011881 -164962259 - MIR SINE MIR 0 262 182 1654 251 88 22 chrX 12012018 12012509 -164961631 + MLT1H LTR MaLR 12 534 -15 238 253 22 11 chrX 12012520 12012611 -164961529 + MER103 DNA DNA 75 166 0 327 113 0 0 chrX 12013010 12013063 -164961077 + (A)n Simple_repeat Simple_repeat 1 53 0 2726 210 94 36 chrX 12013720 12014566 -164959574 + L1MC4 LINE L1 7106 8042 0 22 0 0 0 chrX 12016158 12016180 -164957960 + GC_rich Low_complexity Low_complexity 1 22 0 1930 152 0 3 chrX 12017007 12017303 -164956837 + AluJb SINE Alu 1 295 -17 439 196 20 10 chrX 12017701 12017803 -164956337 - MER5A DNA MER1_type -80 109 7 216 67 0 0 chrX 12018824 12018854 -164955286 + (ATG)n Simple_repeat Simple_repeat 1 30 0 427 272 127 38 chrX 12019593 12019806 -164954334 - MIR SINE MIR -16 246 15 667 199 2 2 chrX 12019824 12019956 -164954184 + MER5B DNA MER1_type 58 178 0 1234 244 52 10 chrX 12020391 12020699 -164953441 + MLT1I LTR MaLR 89 409 0 449 220 18 18 chrX 12021277 12021386 -164952754 - MER5B DNA MER1_type -62 116 8 203 233 0 23 chrX 12021430 12021473 -164952667 - MIR SINE MIR -115 93 52 204 125 0 0 chrX 12021864 12021896 -164952244 + (TG)n Simple_repeat Simple_repeat 1 32 0 408 40 0 0 chrX 12022063 12022113 -164952027 + (TG)n Simple_repeat Simple_repeat 2 51 0 1401 186 25 31 chrX 12022381 12022699 -164951441 + MER33 DNA MER1_type 2 317 -7 741 199 144 15 chrX 12022800 12023001 -164951139 + MIR SINE MIR 35 261 -1 382 111 259 12 chrX 12023893 12023974 -164950166 - MER20 DNA MER1_type 0 219 119 2030 151 55 56 chrX 12023974 12024460 -164949680 - MLT2A2 LTR ERVL 0 554 62 2288 119 51 20 chrX 12024460 12024813 -164949327 + THE1B LTR MaLR 1 364 0 2030 151 55 56 chrX 12024813 12024875 -164949265 - MLT2A2 LTR ERVL -492 62 1 599 187 45 15 chrX 12024875 12024994 -164949146 - MER20 DNA MER1_type -96 123 1 672 265 5 41 chrX 12025002 12025198 -164948942 - MER5A DNA MER1_type 0 189 1 1188 190 53 34 chrX 12026523 12026786 -164947354 - LTR16C LTR ERVL -55 436 169 336 281 21 3 chrX 12027032 12027162 -164946978 + MER5A DNA MER1_type 1 143 -46 528 199 37 42 chrX 12028894 12029076 -164945064 + MIR SINE MIR 12 191 -62 1407 113 0 0 chrX 12029143 12029329 -164944811 + AluSq SINE Alu 1 186 -127 229 182 18 18 chrX 12030726 12030781 -164943359 + (TAA)n Simple_repeat Simple_repeat 3 57 0 458 235 125 0 chrX 12030821 12030957 -164943183 - MIR SINE MIR -52 210 58 441 167 0 0 chrX 12030974 12031052 -164943088 + L2 LINE L2 3221 3298 -15 396 250 0 0 chrX 12031286 12031382 -164942758 + MIR SINE MIR 67 162 -100 570 296 108 38 chrX 12031419 12031763 -164942377 + MLT1J LTR MaLR 34 401 -110 250 330 0 9 chrX 12031828 12031934 -164942206 + MIR SINE MIR 157 261 -1 680 244 28 22 chrX 12032580 12032760 -164941380 + MER5A DNA MER1_type 2 182 -7 851 239 33 16 chrX 12032789 12033169 -164940971 - LTR16A1 LTR ERVL 0 457 2 278 143 0 0 chrX 12033300 12033342 -164940798 - 5S rRNA rRNA -79 42 1 939 244 0 0 chrX 12034661 12034858 -164939282 - MIR SINE MIR -10 252 56 771 197 7 0 chrX 12037410 12037557 -164936583 + MER3 DNA MER1_type 41 188 -21 * 1758 136 12 81 chrX 12037536 12037955 -164936185 + MER3 DNA MER1_type 2235 2624 0 1911 165 83 70 chrX 12038167 12038683 -164935457 + Charlie1b DNA MER1_type 1 523 0 1838 228 66 0 chrX 12038833 12039271 -164934869 + L1ME3A LINE L1 5704 6170 0 379 165 37 73 chrX 12040163 12040272 -164933868 - MLT1J1 LTR MaLR -341 105 1 1705 162 0 36 chrX 12040341 12040643 -164933497 + AluJo SINE Alu 1 291 -21 22 0 0 0 chrX 12040643 12040665 -164933475 + AT_rich Low_complexity Low_complexity 1 22 0 288 148 16 16 chrX 12041743 12041804 -164932336 - MER5A DNA MER1_type -103 86 26 521 86 11 43 chrX 12043621 12043714 -164930426 + MER5B DNA MER1_type 72 161 -17 24 32 0 0 chrX 12045018 12045049 -164929091 + AT_rich Low_complexity Low_complexity 1 31 0 447 306 111 17 chrX 12045181 12045416 -164928724 + MIR SINE MIR 2 258 -4 186 286 74 89 chrX 12045866 12045971 -164928169 - L2 LINE L2 -12 3260 3155 1724 142 36 127 chrX 12045971 12046442 -164927698 - MSTC LTR MaLR 0 428 1 186 286 74 89 chrX 12046442 12046605 -164927535 - L2 LINE L2 -117 3155 2996 216 0 0 0 chrX 12047754 12047778 -164926362 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 195 100 0 0 chrX 12048406 12048436 -164925704 + (A)n Simple_repeat Simple_repeat 1 30 0 216 0 0 0 chrX 12048589 12048613 -164925527 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2108 94 0 11 chrX 12048613 12048889 -164925251 - AluSc SINE Alu -36 273 1 241 293 30 0 chrX 12048927 12049026 -164925114 + MIR SINE MIR 161 262 0 523 271 18 30 chrX 12049745 12049911 -164924229 - MIR SINE MIR -78 184 21 222 37 0 0 chrX 12049920 12049947 -164924193 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 207 316 102 58 chrX 12050960 12051166 -164922974 + L2 LINE L2 2869 3083 -189 21 0 0 0 chrX 12051826 12051847 -164922293 + AT_rich Low_complexity Low_complexity 1 21 0 273 57 0 0 chrX 12052568 12052603 -164921537 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1707 155 36 11 chrX 12052606 12052883 -164921257 - AluJo SINE Alu -26 286 3 192 125 31 0 chrX 12054000 12054032 -164920108 + MER5B DNA MER1_type 146 178 0 1192 236 125 34 chrX 12054730 12055192 -164918948 - MLT1H LTR MaLR -1 548 4 698 266 27 5 chrX 12055397 12055585 -164918555 + MIR SINE MIR 1 192 -70 21 0 0 0 chrX 12056218 12056239 -164917901 + AT_rich Low_complexity Low_complexity 1 21 0 214 298 95 0 chrX 12056997 12057081 -164917059 - MIR3 SINE MIR -5 203 112 1084 176 70 18 chrX 12058210 12058437 -164915703 - MLT1J2 LTR MaLR -205 245 7 1266 214 0 0 chrX 12058599 12058823 -164915317 + MER58A DNA MER1_type 1 224 0 3977 118 22 5 chrX 12058899 12059525 -164914615 + L1MA5 LINE L1 5658 6294 -6 262 216 182 34 chrX 12059591 12059679 -164914461 + L2 LINE L2 3192 3292 -21 560 232 55 76 chrX 12059807 12060044 -164914096 - MIR SINE MIR -6 256 25 231 114 0 0 chrX 12060047 12060082 -164914058 + (T)n Simple_repeat Simple_repeat 1 35 0 463 214 45 0 chrX 12060470 12060582 -164913558 - MER5A DNA MER1_type -39 150 34 29 60 0 0 chrX 12062809 12062859 -164911281 + GC_rich Low_complexity Low_complexity 1 50 0 313 258 22 11 chrX 12065547 12065636 -164908504 - MLT1J2 LTR MaLR -2 448 359 607 174 95 2 chrX 12065662 12065871 -164908269 - MLT1J2 LTR MaLR -147 303 53 212 321 24 12 chrX 12066124 12066208 -164907932 - MIR SINE MIR -107 101 17 1063 221 9 0 chrX 12066383 12066605 -164907535 - MIR SINE MIR -36 226 3 369 241 107 70 chrX 12067044 12067490 -164906650 - MLT1G1 LTR MaLR -8 587 39 1648 56 0 14 chrX 12067898 12068113 -164906027 - L1PA8 LINE L1 -1 6171 5960 1501 237 23 6 chrX 12068410 12068760 -164905380 + LTR16A LTR ERVL 82 437 -13 4235 194 73 50 chrX 12069873 12071962 -164902178 - L1ME2 LINE L1 0 6164 4026 2585 24 7 3 chrX 12071962 12072255 -164901885 - AluY SINE Alu -2 309 16 4235 194 73 50 chrX 12072255 12072288 -164901852 - L1ME2 LINE L1 -2138 4026 3995 1068 250 53 3 chrX 12072275 12072575 -164901565 - L1ME2 LINE L1 -2466 3680 3366 * 344 122 0 40 chrX 12073247 12073321 -164900819 + (TGAA)n Simple_repeat Simple_repeat 1 71 0 345 238 2 33 chrX 12073339 12073452 -164900688 - MLT1I LTR MaLR 0 450 318 576 251 37 25 chrX 12073454 12073617 -164900523 - MLT1J2 LTR MaLR -219 231 67 1724 172 3 31 chrX 12074614 12074905 -164899235 + AluJb SINE Alu 1 283 -29 665 291 29 0 chrX 12075085 12075295 -164898845 + L2 LINE L2 2843 3058 -255 1271 195 29 0 chrX 12075295 12075541 -164898599 - LTR16C LTR ERVL 0 491 239 422 282 204 19 chrX 12075714 12075930 -164898210 + L2 LINE L2 3056 3311 -2 247 312 118 0 chrX 12078186 12078279 -164895861 - L2 LINE L2 0 3272 3169 1371 239 86 18 chrX 12078766 12079163 -164894977 - MLT1J2 LTR MaLR -6 444 21 484 303 13 42 chrX 12079334 12079572 -164894568 + L2 LINE L2 3083 3313 0 549 0 0 0 chrX 12079821 12079882 -164894258 + (CA)n Simple_repeat Simple_repeat 2 62 0 243 342 148 10 chrX 12080061 12080263 -164893877 + MIR SINE MIR 20 249 -13 334 169 39 0 chrX 12080384 12080461 -164893679 + MER116 DNA Mariner 1 80 0 525 81 14 0 chrX 12081061 12081135 -164893005 + MER116 DNA Mariner 5 79 -1 926 321 35 12 chrX 12081919 12082262 -164891878 + L1MC4a LINE L1 6450 6800 -1008 300 173 67 0 chrX 12083517 12083592 -164890548 - MER116 DNA Mariner 0 80 1 745 209 63 0 chrX 12083615 12083773 -164890367 + MER5A DNA MER1_type 16 183 -6 330 241 146 89 chrX 12084328 12084459 -164889681 + L1ME4a LINE L1 5728 5850 -271 1451 167 33 0 chrX 12084459 12084622 -164889518 - AluJb SINE Alu -20 292 117 234 0 0 0 chrX 12084622 12084648 -164889492 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1451 167 33 0 chrX 12084648 12084724 -164889416 - AluJb SINE Alu -195 117 45 330 241 146 89 chrX 12084724 12084907 -164889233 + L1ME4a LINE L1 5850 6060 -61 219 36 0 0 chrX 12084910 12084938 -164889202 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 237 33 0 0 chrX 12084937 12084967 -164889173 + (GA)n Simple_repeat Simple_repeat 1 30 0 2549 128 47 2 chrX 12084967 12085374 -164888766 - MSTA LTR MaLR -3 425 1 207 255 51 61 chrX 12085497 12085595 -164888545 + L2 LINE L2 3171 3267 -5 299 307 95 15 chrX 12086925 12087062 -164887078 + MIR3 SINE MIR 12 159 -49 746 207 36 131 chrX 12087062 12087264 -164886876 + MER112 DNA MER1_type 1 172 -88 371 71 36 0 chrX 12087264 12087320 -164886820 - L1PA7 LINE L1 0 6154 6097 746 207 36 131 chrX 12087320 12087392 -164886748 + MER112 DNA MER1_type 172 249 -11 410 242 67 8 chrX 12088199 12088319 -164885821 - MIR3 SINE MIR -38 170 44 434 310 44 35 chrX 12090086 12090315 -164883825 + MIR SINE MIR 11 241 -21 2815 82 3 14 chrX 12090537 12090905 -164883235 + THE1B LTR MaLR 1 364 0 2094 191 87 16 chrX 12090918 12091077 -164883063 - MLT1E1 LTR MaLR -2 652 506 222 37 0 0 chrX 12091077 12091104 -164883036 + (CATCT)n Simple_repeat Simple_repeat 4 30 0 2094 191 87 16 chrX 12091104 12091484 -164882656 - MLT1E1 LTR MaLR -148 506 1 288 268 12 12 chrX 12092550 12092632 -164881508 + L2 LINE L2 3193 3274 -39 303 340 41 3 chrX 12092760 12092896 -164881244 - MER5A DNA MER1_type -2 176 33 1166 182 43 16 chrX 12094600 12094858 -164879282 - MER20B DNA MER1_type -5 778 514 593 239 221 26 chrX 12094930 12095202 -164878938 - MER20B DNA MER1_type -458 325 1 309 324 15 22 chrX 12095206 12095342 -164878798 - MIR3 SINE MIR -53 155 21 290 328 41 16 chrX 12096224 12096346 -164877794 + L2 LINE L2 3147 3271 -1 225 352 106 21 chrX 12097273 12097415 -164876725 - L2 LINE L2 -97 3175 3022 21 36 0 0 chrX 12097553 12097581 -164876559 + AT_rich Low_complexity Low_complexity 1 28 0 303 255 27 27 chrX 12098461 12098589 -164875551 + MER63 DNA MER1_type 709 1060 0 201 94 0 0 chrX 12098674 12098706 -164875434 + (TTG)n Simple_repeat Simple_repeat 2 33 0 766 236 25 20 chrX 12099381 12099580 -164874560 + MIR SINE MIR 53 252 -10 614 248 178 5 chrX 12101209 12101423 -164872717 + MIR SINE MIR 12 262 0 450 303 45 0 chrX 12101490 12101622 -164872518 + MIR SINE MIR 52 189 -73 1027 241 114 50 chrX 12101759 12102199 -164871941 + L1ME4a LINE L1 5514 5981 -140 559 214 0 0 chrX 12102207 12102296 -164871844 + MER119 DNA MER1_type 1 89 -494 444 312 115 15 chrX 12104093 12104433 -164869707 + HAL1b LINE L1 481 854 -494 1352 289 49 29 chrX 12104851 12105550 -164868590 + L1MC4a LINE L1 3243 3955 -2191 186 133 0 0 chrX 12105567 12105597 -164868543 + (TA)n Simple_repeat Simple_repeat 2 31 0 2031 259 94 37 chrX 12105607 12106158 -164867982 + L1MC4a LINE L1 4370 4888 -1258 905 199 147 5 chrX 12106158 12106349 -164867791 - MER20 DNA MER1_type 0 219 2 2031 259 94 37 chrX 12106349 12106824 -164867316 + L1MC4a LINE L1 4888 5334 -812 2211 89 10 7 chrX 12106824 12107115 -164867025 + AluJb SINE Alu 21 312 0 2031 259 94 37 chrX 12107115 12107560 -164866580 + L1MC4a LINE L1 5334 5325 -821 2065 158 12 0 chrX 12107560 12107902 -164866238 + MER7A DNA MER2_type 2 345 -1 2031 259 94 37 chrX 12107902 12107946 -164866194 + L1MC4a LINE L1 5324 5364 -782 192 40 0 0 chrX 12108083 12108108 -164866032 + (CA)n Simple_repeat Simple_repeat 2 26 0 1396 153 51 45 chrX 12108633 12108966 -164865174 + L1MC4a LINE L1 5983 6317 -1491 1967 109 11 18 chrX 12109060 12109344 -164864796 + AluSx SINE Alu 17 298 -14 1753 147 0 87 chrX 12109630 12109963 -164864177 + AluJb SINE Alu 1 304 -8 195 100 0 0 chrX 12109985 12110015 -164864125 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1169 109 0 29 chrX 12110779 12110949 -164863191 + FRAM SINE Alu 5 170 -2 2245 89 7 14 chrX 12110949 12111241 -164862899 - AluY SINE Alu -21 290 1 2200 191 80 14 chrX 12112336 12112563 -164861577 + L1MC4a LINE L1 7273 7484 -324 1539 166 22 26 chrX 12112563 12112861 -164861279 + AluJo SINE Alu 14 310 0 2200 191 80 14 chrX 12112861 12113134 -164861006 + L1MC4a LINE L1 7484 7807 -1 315 0 0 0 chrX 12113134 12113169 -164860971 + (CA)n Simple_repeat Simple_repeat 2 36 0 372 242 30 10 chrX 12113516 12113615 -164860525 - MER117 DNA MER1_type -8 189 89 237 321 45 36 chrX 12115477 12115589 -164858551 - L2 LINE L2 -490 2824 2712 857 232 75 31 chrX 12115707 12115961 -164858179 + ERVL LTR ERVL 2365 2629 -3135 1453 227 176 58 chrX 12116141 12116850 -164857290 - LTR50 LTR ERVL -2 793 1 1562 193 64 9 chrX 12117070 12117397 -164856743 + L1MD2 LINE L1 5788 6132 -227 23 0 0 0 chrX 12118144 12118167 -164855973 + AT_rich Low_complexity Low_complexity 1 23 0 1492 170 147 93 chrX 12118373 12118890 -164855250 - L1ME3 LINE L1 -254 5908 5364 225 67 0 0 chrX 12118890 12118935 -164855205 + LTR66 LTR ERVL 394 438 -172 225 67 0 0 chrX 12118897 12118942 -164855198 - LTR66 LTR ERVL -172 438 394 297 0 0 0 chrX 12119005 12119038 -164855102 + (CA)n Simple_repeat Simple_repeat 2 34 0 180 0 0 0 chrX 12119037 12119057 -164855083 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 275 340 49 15 chrX 12121058 12121261 -164852879 - L1MEd LINE L1 -5314 805 596 4050 95 7 13 chrX 12121676 12122232 -164851908 - L1PB2 LINE L1 -6 6145 5593 1598 78 5 0 chrX 12122237 12122441 -164851699 - L1PA13 LINE L1 -3 6160 5956 2346 105 3 0 chrX 12123606 12123910 -164850230 - AluSx SINE Alu -7 305 1 915 212 59 18 chrX 12124250 12124420 -164849720 - MER45A DNA AcHobo -1 177 1 21 0 0 0 chrX 12124516 12124537 -164849603 + AT_rich Low_complexity Low_complexity 1 21 0 1046 219 21 17 chrX 12124707 12124945 -164849195 - MIR SINE MIR -21 241 3 974 168 11 14 chrX 12124965 12125394 -164848746 + GA-rich Low_complexity Low_complexity 1 428 0 1010 102 17 6 chrX 12125399 12125576 -164848564 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 926 130 20 17 chrX 12125579 12125879 -164848261 + GA-rich Low_complexity Low_complexity 1 301 0 336 138 0 0 chrX 12126576 12126641 -164847499 + (TC)n Simple_repeat Simple_repeat 2 66 0 411 73 0 0 chrX 12130370 12130425 -164843715 + (TG)n Simple_repeat Simple_repeat 1 55 0 252 0 0 0 chrX 12135193 12135221 -164838919 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 726 54 0 0 chrX 12135849 12135942 -164838198 + L1PB1 LINE L1 6058 6150 -1 294 89 71 0 chrX 12135945 12136001 -164838139 + L1MA7 LINE L1 6232 6291 0 362 280 98 8 chrX 12136863 12136995 -164837145 + MIR SINE MIR 4 147 -115 204 125 0 0 chrX 12137371 12137403 -164836737 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 596 247 7 7 chrX 12137630 12137780 -164836360 - L1MC5 LINE L1 -76 7885 7736 2489 80 0 10 chrX 12137868 12138181 -164835959 - AluSx SINE Alu -2 310 1 283 336 96 0 chrX 12138301 12138405 -164835735 + L2 LINE L2 3141 3254 -18 204 111 0 0 chrX 12141150 12141186 -164832954 + (TG)n Simple_repeat Simple_repeat 2 37 0 1801 70 4 0 chrX 12142759 12142986 -164831154 + AluSq SINE Alu 82 309 -4 686 261 152 0 chrX 12143248 12143432 -164830708 - MIR SINE MIR -28 234 23 237 33 0 0 chrX 12144062 12144092 -164830048 + (C)n Simple_repeat Simple_repeat 1 30 0 2362 107 0 0 chrX 12146210 12146518 -164827622 + AluSx SINE Alu 1 308 -4 512 307 92 5 chrX 12146684 12146902 -164827238 - MIR SINE MIR -6 256 20 811 238 70 23 chrX 12147042 12147256 -164826884 - MIR SINE MIR -21 241 18 186 336 94 16 chrX 12147391 12147519 -164826621 - L2 LINE L2 -228 3044 2907 235 188 21 0 chrX 12147678 12147726 -164826414 - MER58 DNA MER1_type -5 2415 2367 1528 123 156 62 chrX 12147732 12148040 -164826100 - MER1B DNA MER1_type -2 337 1 284 284 10 10 chrX 12148045 12148147 -164825993 - L2 LINE L2 -448 2866 2765 500 200 8 67 chrX 12148213 12148259 -164825881 + MIR SINE MIR 63 110 -152 1386 71 77 0 chrX 12148259 12148298 -164825842 - MER107 DNA MER1_type 0 197 162 182 36 0 36 chrX 12148298 12148326 -164825814 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1386 71 77 0 chrX 12148326 12148468 -164825672 - MER107 DNA MER1_type -35 162 2 500 200 8 67 chrX 12148468 12148541 -164825599 + MIR SINE MIR 110 175 -87 21 36 0 0 chrX 12148591 12148619 -164825521 + AT_rich Low_complexity Low_complexity 1 28 0 344 125 0 100 chrX 12148898 12148978 -164825162 + L1MC3 LINE L1 7616 7687 -98 483 281 114 6 chrX 12149291 12149458 -164824682 + L1MC/D LINE L1 5627 5811 -1997 866 198 35 10 chrX 12149498 12149695 -164824445 - L1ME3A LINE L1 -201 5969 5768 199 200 0 0 chrX 12150213 12150248 -164823892 - L3 LINE CR1 -13 1564 1530 695 290 0 5 chrX 12150982 12151168 -164822972 - L1ME3A LINE L1 -436 5728 5544 25 31 0 0 chrX 12152555 12152587 -164821553 + AT_rich Low_complexity Low_complexity 1 32 0 342 279 42 91 chrX 12154029 12154337 -164819803 + L2 LINE L2 2817 3109 -163 529 254 53 18 chrX 12154448 12154617 -164819523 - MIR SINE MIR -79 183 9 907 204 39 6 chrX 12154626 12154807 -164819333 - MER5A DNA MER1_type -2 187 1 210 301 57 49 chrX 12154846 12154889 -164819251 + L2 LINE L2 3175 3216 -97 1693 142 0 8 chrX 12154889 12155149 -164818991 - AluJb SINE Alu -54 258 1 210 301 57 49 chrX 12155149 12155228 -164818912 + L2 LINE L2 3216 3298 -15 294 29 0 0 chrX 12155231 12155266 -164818874 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 322 295 16 8 chrX 12157173 12157295 -164816845 - MIR SINE MIR 0 262 140 22 0 0 0 chrX 12159216 12159238 -164814902 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 12161589 12161610 -164812530 + AT_rich Low_complexity Low_complexity 1 21 0 293 261 123 14 chrX 12163441 12163579 -164810561 + Charlie7 DNA MER1_type 11 163 -2449 574 214 60 59 chrX 12164151 12164179 -164809961 + Charlie7 DNA MER1_type 346 372 -2240 598 232 61 0 chrX 12164179 12164343 -164809797 - MER104 DNA MER2_type -2 178 5 574 214 60 59 chrX 12164343 12164600 -164809540 + Charlie7 DNA MER1_type 372 719 -1893 1151 233 39 52 chrX 12164624 12165066 -164809074 + L1MC5 LINE L1 7478 7913 -48 1033 238 60 39 chrX 12165070 12165456 -164808684 + Charlie7 DNA MER1_type 717 1110 -1502 1865 102 8 0 chrX 12165916 12166171 -164807969 + AluSx SINE Alu 1 257 -55 705 229 49 7 chrX 12166180 12166436 -164807704 - MLT1J2 LTR MaLR -109 341 1 269 227 0 15 chrX 12167067 12167133 -164807007 + L2 LINE L2 3159 3223 -90 317 230 0 23 chrX 12167595 12167682 -164806458 + HsTC2 DNA Tc2 2 86 -1812 331 286 11 111 chrX 12167962 12168224 -164805916 - L2 LINE L2 -44 3228 2993 900 186 30 74 chrX 12168477 12168537 -164805603 - MLT1F1 LTR MaLR -13 554 493 189 0 0 0 chrX 12168537 12168558 -164805582 + (TC)n Simple_repeat Simple_repeat 2 22 0 2130 92 0 20 chrX 12168558 12168850 -164805290 - AluSx SINE Alu -26 286 1 900 186 30 74 chrX 12168850 12169019 -164805121 - MLT1F1 LTR MaLR -72 495 334 554 243 66 7 chrX 12169334 12169486 -164804654 - MLT1F1 LTR MaLR -381 161 1 633 304 123 28 chrX 12169486 12169580 -164804560 + L1ME4a LINE L1 5380 5464 -657 2076 118 0 3 chrX 12169580 12169886 -164804254 + L1PA16 LINE L1 5858 6162 -4 633 304 123 28 chrX 12169886 12170261 -164803879 + L1ME4a LINE L1 5464 5894 -227 630 178 9 0 chrX 12170727 12170834 -164803306 + FLAM_A SINE Alu 1 108 -34 484 261 0 0 chrX 12171895 12172006 -164802134 - MLT1J LTR MaLR -142 369 259 208 333 78 31 chrX 12181760 12182015 -164792125 + L2 LINE L2 2844 3110 -203 234 62 0 0 chrX 12184105 12184137 -164790003 + (TC)n Simple_repeat Simple_repeat 1 32 0 629 265 102 23 chrX 12184547 12184965 -164789175 + MLT1F1 LTR MaLR 18 506 -61 229 170 75 0 chrX 12185004 12185057 -164789083 - AluJb SINE Alu 0 302 246 1453 160 0 8 chrX 12185245 12185495 -164788645 - AluJb SINE Alu -64 248 1 377 302 65 64 chrX 12186535 12186939 -164787201 - MLT1J2 LTR MaLR -2 407 1 285 321 52 0 chrX 12187137 12187290 -164786850 - Charlie8 DNA MER1_type -2235 182 15 43754 31 23 1 chrX 12188020 12194033 -164780107 - L1PA3 LINE L1 -1 6154 3 221 293 13 0 chrX 12194682 12194757 -164779383 - MER5B DNA MER1_type -98 80 5 645 262 21 0 chrX 12196499 12196640 -164777500 - MIR SINE MIR -102 160 17 294 216 40 14 chrX 12196832 12196906 -164777234 + Charlie7 DNA MER1_type 30 105 -2507 * 333 216 39 46 chrX 12196873 12197026 -164777114 + Charlie7 DNA MER1_type 2420 2571 -41 585 276 56 80 chrX 12197281 12197567 -164776573 - L2 LINE L2 -1 3271 2993 747 191 0 0 chrX 12197581 12197712 -164776428 + FLAM_C SINE Alu 1 131 -2 317 353 64 41 chrX 12197924 12198343 -164775797 - L2 LINE L2 -565 2749 2321 399 211 0 0 chrX 12198358 12198448 -164775692 + GA-rich Low_complexity Low_complexity 1 90 0 276 257 14 14 chrX 12198815 12198885 -164775255 + GA-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chrX 12198897 12198928 -164775212 + AT_rich Low_complexity Low_complexity 1 31 0 181 295 295 0 chrX 12199195 12199300 -164774840 - L2 LINE L2 -8 3264 3129 732 71 43 64 chrX 12200964 12201104 -164773036 - L1MB8 LINE L1 0 6178 6042 371 331 129 30 chrX 12201126 12201389 -164772751 + L3b LINE CR1 1103 1391 -192 356 287 46 9 chrX 12201765 12201830 -164772310 - L2 LINE L2 -3 3269 3197 735 199 168 51 chrX 12201830 12202026 -164772114 + MER20 DNA MER1_type 1 219 0 356 287 46 9 chrX 12202026 12202068 -164772072 - L2 LINE L2 -75 3197 3158 1688 126 44 14 chrX 12202360 12202525 -164771615 - AluJb SINE Alu -8 304 125 405 0 0 0 chrX 12202525 12202570 -164771570 + (TG)n Simple_repeat Simple_repeat 2 46 0 1688 126 44 14 chrX 12202570 12202698 -164771442 - AluJb SINE Alu -187 125 2 231 129 0 15 chrX 12203453 12203492 -164770648 + MIR SINE MIR 106 144 -64 230 244 0 0 chrX 12203578 12203623 -164770517 + polypyrimidine Low_complexity Low_complexity 2 46 0 189 0 0 0 chrX 12205633 12205654 -164768486 + (A)n Simple_repeat Simple_repeat 1 21 0 1209 186 5 18 chrX 12205862 12206082 -164768058 - MER20 DNA MER1_type 0 219 3 246 212 18 90 chrX 12206448 12206523 -164767617 - MIR SINE MIR -64 144 82 2087 92 0 18 chrX 12209887 12210169 -164763971 + AluSx SINE Alu 1 277 -35 231 36 0 0 chrX 12210173 12210201 -164763939 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 2057 135 3 0 chrX 12210591 12210902 -164763238 - AluSx SINE Alu 0 312 1 180 163 0 0 chrX 12210912 12210955 -164763185 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 287 276 0 0 chrX 12210957 12211015 -164763125 - L2 LINE L2 -76 3237 3180 327 313 0 10 chrX 12211673 12211769 -164762371 - MIR SINE MIR -86 176 82 1887 115 194 22 chrX 12213315 12213680 -164760460 - MSTA LTR MaLR 0 428 1 217 232 11 105 chrX 12213772 12213867 -164760273 + L2 LINE L2 2956 3041 -231 201 227 23 0 chrX 12213997 12214041 -164760099 + L2 LINE L2 3265 3309 -4 334 266 8 70 chrX 12214116 12214244 -164759896 - MIR3 SINE MIR -3 205 86 1553 60 74 5 chrX 12214626 12214841 -164759299 - MER30 DNA MER1_type 0 230 1 607 216 148 0 chrX 12214849 12215011 -164759129 + MER5A DNA MER1_type 4 189 0 458 227 234 0 chrX 12215017 12215158 -164758982 - MER5B DNA MER1_type 0 178 5 1672 169 3 13 chrX 12216414 12216715 -164757425 - AluJb SINE Alu -14 298 1 370 183 28 0 chrX 12216715 12216786 -164757354 - MIR SINE MIR -55 153 81 205 295 0 0 chrX 12217126 12217187 -164756953 + MIR SINE MIR 87 147 -61 233 109 87 22 chrX 12217479 12217525 -164756615 - L2 LINE L2 0 3313 3265 931 256 32 16 chrX 12218439 12218685 -164755455 + MIR SINE MIR 13 262 0 405 326 0 14 chrX 12218687 12218831 -164755309 + (CAT)n Simple_repeat Simple_repeat 2 143 0 1555 223 104 43 chrX 12220652 12221115 -164753025 - LTR16C LTR ERVL 0 491 1 270 0 0 0 chrX 12221578 12221608 -164752532 + (TAA)n Simple_repeat Simple_repeat 1 30 0 390 129 0 0 chrX 12221945 12222007 -164752133 + (CA)n Simple_repeat Simple_repeat 1 62 0 218 288 98 33 chrX 12222149 12222302 -164751838 - L2 LINE L2 -240 3032 2870 593 89 0 0 chrX 12222363 12222442 -164751698 + MADE1 DNA Mariner 1 79 -1 219 69 0 0 chrX 12222628 12222657 -164751483 + (TCC)n Simple_repeat Simple_repeat 3 31 0 * 295 83 33 33 chrX 12222650 12222710 -164751430 + (TTTC)n Simple_repeat Simple_repeat 3 62 0 181 330 90 0 chrX 12222756 12222856 -164751284 - MIR SINE MIR -1 261 153 1278 225 74 39 chrX 12223384 12223819 -164750321 + MLT1J2 LTR MaLR 1 450 0 235 325 25 0 chrX 12224721 12224801 -164749339 - MIR SINE MIR -67 195 114 2242 251 76 16 chrX 12225921 12226618 -164747522 + L1ME2 LINE L1 5426 6164 0 482 246 49 8 chrX 12227269 12227391 -164746749 + MIR SINE MIR 36 162 -100 231 266 25 63 chrX 12227434 12227513 -164746627 - L3 LINE CR1 -8 1569 1494 997 143 0 0 chrX 12227557 12227704 -164746436 - FRAM SINE Alu -16 150 4 22 56 0 0 chrX 12227841 12227877 -164746263 + AT_rich Low_complexity Low_complexity 1 36 0 372 263 106 56 chrX 12227992 12228171 -164745969 - L2 LINE L2 -167 3146 2959 219 36 0 0 chrX 12228183 12228211 -164745929 + (TG)n Simple_repeat Simple_repeat 2 29 0 189 94 0 0 chrX 12228212 12228244 -164745896 + (GA)n Simple_repeat Simple_repeat 2 33 0 421 262 75 0 chrX 12228346 12228453 -164745687 - MIR3 SINE MIR -50 158 44 921 279 0 5 chrX 12229730 12229934 -164744206 + MIR SINE MIR 60 262 0 270 143 0 0 chrX 12230329 12230371 -164743769 + 5S rRNA rRNA 1 42 -79 589 179 8 24 chrX 12230374 12230497 -164743643 + MER5B DNA MER1_type 54 174 -4 198 211 58 39 chrX 12230663 12230715 -164743425 + L2 LINE L2 3261 3313 0 189 147 0 0 chrX 12230728 12230762 -164743378 + (CGAA)n Simple_repeat Simple_repeat 3 36 0 410 192 50 20 chrX 12232546 12232645 -164741495 + L2 LINE L2 1891 1992 -1322 684 261 237 46 chrX 12232645 12233147 -164740993 + L2 LINE L2 2695 3301 -12 270 143 0 0 chrX 12233148 12233197 -164740943 + (GGGA)n Simple_repeat Simple_repeat 2 50 0 1792 123 112 37 chrX 12233279 12233628 -164740512 + THE1C LTR MaLR 1 375 0 699 234 110 55 chrX 12234086 12234304 -164739836 - MIR SINE MIR -21 241 12 951 204 0 52 chrX 12234590 12234821 -164739319 + MER20 DNA MER1_type 1 219 0 202 333 149 5 chrX 12235410 12235605 -164738535 + MIR SINE MIR 34 256 -6 198 0 0 0 chrX 12235921 12235943 -164738197 + (A)n Simple_repeat Simple_repeat 1 22 0 323 351 29 17 chrX 12235992 12236166 -164737974 - MER5B DNA MER1_type -1 177 2 241 250 54 0 chrX 12236847 12236903 -164737237 + L2 LINE L2 3251 3309 -4 182 62 31 0 chrX 12237127 12237159 -164736981 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 270 343 10 20 chrX 12238711 12238810 -164735330 + L2 LINE L2 3170 3267 -5 636 163 0 0 chrX 12238846 12238944 -164735196 + MER81 DNA DNA 1 98 -16 1597 194 69 50 chrX 12239681 12239883 -164734257 + L1ME3 LINE L1 5718 5915 -247 2038 128 0 0 chrX 12239883 12240180 -164733960 + AluSx SINE Alu 1 297 -15 1597 194 69 50 chrX 12240180 12240414 -164733726 + L1ME3 LINE L1 5915 6162 0 1995 140 39 14 chrX 12242887 12243244 -164730896 - MER47A DNA MER2_type 0 366 1 998 320 73 5 chrX 12243430 12243811 -164730329 - LTR16C LTR ERVL -6 485 79 2242 187 24 38 chrX 12244490 12244993 -164729147 + L1ME3 LINE L1 5665 6160 -2 347 0 0 23 chrX 12245284 12245328 -164728812 + (CA)n Simple_repeat Simple_repeat 2 44 0 224 231 15 52 chrX 12245425 12245559 -164728581 + (CA)n Simple_repeat Simple_repeat 2 130 0 198 0 0 0 chrX 12245675 12245697 -164728443 + (CAT)n Simple_repeat Simple_repeat 3 24 0 277 316 41 11 chrX 12246330 12246547 -164727593 + L1ME4a LINE L1 5672 5819 -302 293 291 36 18 chrX 12246942 12247052 -164727088 - L2 LINE L2 -1 3271 3160 1106 248 68 40 chrX 12247182 12247609 -164726531 - MLT1J1 LTR MaLR -4 442 4 21 0 0 0 chrX 12247724 12247745 -164726395 + AT_rich Low_complexity Low_complexity 1 21 0 303 300 179 21 chrX 12248263 12248403 -164725737 - L2 LINE L2 0 3272 3111 237 317 125 8 chrX 12248721 12248841 -164725299 - MIR SINE MIR -98 164 31 419 239 0 0 chrX 12249309 12249401 -164724739 + L1ME4a LINE L1 5964 6055 -66 185 163 47 0 chrX 12251594 12251637 -164722503 + A-rich Low_complexity Low_complexity 5 49 0 748 275 0 25 chrX 12251926 12252126 -164722014 - MIR SINE MIR -12 250 56 456 156 78 0 chrX 12252130 12252207 -164721933 + MER3 DNA MER1_type 1 83 -126 184 289 0 0 chrX 12252371 12252409 -164721731 - MER5A DNA MER1_type 0 189 152 322 316 109 45 chrX 12253988 12254345 -164719795 - L2 LINE L2 -438 2876 2497 2444 123 22 6 chrX 12254345 12254703 -164719437 - THE1B LTR MaLR 0 364 1 505 244 0 42 chrX 12255147 12255266 -164718874 + MER81 DNA DNA 1 114 0 618 227 92 5 chrX 12256614 12256799 -164717341 - L1ME3A LINE L1 -24 6146 5946 232 234 468 0 chrX 12258923 12259047 -164715093 + MER5A DNA MER1_type 7 188 -1 211 333 27 0 chrX 12259163 12259238 -164714902 + L3 LINE CR1 1492 1568 -9 1980 136 0 10 chrX 12259278 12259588 -164714552 - AluJb SINE Alu -5 307 1 696 226 170 0 chrX 12261147 12261306 -164712834 + MER5A DNA MER1_type 4 189 0 540 217 134 19 chrX 12261317 12261474 -164712666 - MER5B DNA MER1_type -3 175 1 215 273 20 91 chrX 12262747 12262846 -164711294 + MIR SINE MIR 57 148 -60 5682 109 4 6 chrX 12264254 12265078 -164709062 + L1PA15 LINE L1 5341 6165 0 192 286 48 16 chrX 12265081 12265134 -164709006 - L2 LINE L2 0 3313 3256 1877 194 84 16 chrX 12265134 12265505 -164708635 + MSTD LTR MaLR 1 396 0 408 281 47 47 chrX 12265829 12266000 -164708140 + MER5B DNA MER1_type 1 171 -7 1687 285 111 21 chrX 12266241 12266856 -164707284 - MER115 DNA AcHobo -1 692 23 1241 259 58 14 chrX 12267088 12267447 -164706693 - MLT1J LTR MaLR -9 502 128 232 294 71 48 chrX 12267541 12267667 -164706473 - LTR67 LTR ERVL -1 556 428 456 173 13 0 chrX 12267829 12267904 -164706236 - MER3 DNA MER1_type -124 85 10 346 216 98 29 chrX 12268063 12268165 -164705975 + MIR SINE MIR 65 173 -89 283 258 136 49 chrX 12268166 12268512 -164705628 + L1MC4 LINE L1 7469 7977 -65 468 0 0 0 chrX 12269605 12269657 -164704483 + (TG)n Simple_repeat Simple_repeat 2 53 0 226 278 40 35 chrX 12270157 12270330 -164703810 + L1MEc LINE L1 731 904 -5215 752 282 103 74 chrX 12270427 12271182 -164702958 + L1MEc LINE L1 1012 1744 -1569 1230 213 5 9 chrX 12271182 12271403 -164702737 - MER58A DNA MER1_type -4 220 1 752 282 103 74 chrX 12271403 12271542 -164702598 + L1MEc LINE L1 1744 1878 -1435 414 0 0 0 chrX 12271542 12271588 -164702552 + (CA)n Simple_repeat Simple_repeat 1 46 0 752 282 103 74 chrX 12271588 12271695 -164702445 + L1MEc LINE L1 1878 1980 -1333 3349 116 37 8 chrX 12271695 12272203 -164701937 + L1MC1 LINE L1 5811 6333 0 752 282 103 74 chrX 12272203 12272597 -164701543 + L1MEc LINE L1 1980 2469 -844 423 0 0 0 chrX 12272774 12272821 -164701319 + (TG)n Simple_repeat Simple_repeat 1 47 0 349 121 52 0 chrX 12273668 12273726 -164700414 - Charlie5 DNA MER1_type -224 2388 2328 5665 112 12 12 chrX 12273736 12274561 -164699579 - L1MA4A LINE L1 -1 6302 5478 2589 185 51 2 chrX 12274561 12275074 -164699066 - L1MC3 LINE L1 -53 7732 7195 269 235 0 0 chrX 12275077 12275128 -164699012 - MLT1J LTR MaLR -442 125 75 465 124 237 0 chrX 12275162 12275259 -164698881 - MER3 DNA MER1_type -41 168 49 455 253 37 58 chrX 12275552 12275737 -164698403 + MIR SINE MIR 32 212 -49 779 305 95 29 chrX 12275834 12276319 -164697821 + LTR33 LTR ERVL 1 517 -4 306 285 73 32 chrX 12276704 12276827 -164697313 + MIR SINE MIR 15 142 -120 425 233 125 25 chrX 12276869 12276989 -164697151 - L2 LINE L2 0 3313 3182 1136 291 76 8 chrX 12277012 12277429 -164696711 - LTR16A LTR ERVL -3 454 1 2827 104 0 3 chrX 12277527 12277892 -164696248 + THE1B LTR MaLR 1 364 0 281 26 0 26 chrX 12277966 12278005 -164696135 + (TTTTC)n Simple_repeat Simple_repeat 4 41 0 185 292 10 31 chrX 12278077 12278173 -164695967 - L2 LINE L2 -61 3252 3159 342 259 12 0 chrX 12279762 12279847 -164694293 + L1MD3 LINE L1 7798 7883 -112 389 189 33 22 chrX 12279850 12279940 -164694200 + L1MD1 LINE L1 6142 6232 -10 629 243 80 26 chrX 12280006 12280232 -164693908 - MIR SINE MIR 0 262 25 1091 261 112 24 chrX 12280254 12280637 -164693503 - LTR16C LTR ERVL 0 491 75 2313 47 4 7 chrX 12282757 12283034 -164691106 + AluY SINE Alu 35 310 -1 377 218 82 0 chrX 12283341 12283451 -164690689 - L1ME3 LINE L1 -88 6074 5956 455 223 11 0 chrX 12283454 12283548 -164690592 - L1ME3 LINE L1 -534 5636 5542 491 255 27 16 chrX 12284442 12284626 -164689514 + L1MC5 LINE L1 7741 7926 -35 715 216 156 37 chrX 12284719 12284988 -164689152 + L1MC5 LINE L1 7608 7908 -53 938 233 116 13 chrX 12285501 12285733 -164688407 + MIR SINE MIR 7 262 0 306 106 0 0 chrX 12286015 12286062 -164688078 + (TCC)n Simple_repeat Simple_repeat 1 47 0 1764 138 0 66 chrX 12286062 12286367 -164687773 - AluSx SINE Alu -27 285 1 430 310 66 29 chrX 12286676 12286918 -164687222 + L2 LINE L2 1940 2190 -1124 921 261 111 65 chrX 12287020 12287188 -164686952 + MLT1K LTR MaLR 116 275 -313 189 0 0 0 chrX 12287188 12287209 -164686931 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 921 261 111 65 chrX 12287209 12287224 -164686916 + MLT1K LTR MaLR 275 288 -300 1900 167 3 0 chrX 12287224 12287518 -164686622 - AluJo SINE Alu -17 295 1 921 261 111 65 chrX 12287518 12287766 -164686374 + MLT1K LTR MaLR 288 568 -20 464 280 0 8 chrX 12287766 12287898 -164686242 + L2 LINE L2 2216 2346 -968 501 258 75 0 chrX 12287963 12288083 -164686057 + L2 LINE L2 3184 3312 -1 387 313 114 40 chrX 12288104 12288450 -164685690 + L2 LINE L2 2454 2894 -378 2536 170 21 16 chrX 12288450 12288880 -164685260 - MSTB1 LTR MaLR 0 432 1 387 313 114 40 chrX 12288880 12289092 -164685048 + L2 LINE L2 2894 3089 -183 959 188 46 5 chrX 12289176 12289373 -164684767 + MLT1J2 LTR MaLR 43 247 -203 311 311 145 26 chrX 12290295 12290488 -164683652 - MIR SINE MIR -39 223 8 642 208 122 35 chrX 12290973 12291137 -164683003 + L1ME2 LINE L1 5944 6129 -35 6218 121 13 3 chrX 12291137 12292901 -164681239 + L1PA15 LINE L1 4389 6158 -7 642 208 122 35 chrX 12292901 12292933 -164681207 + L1ME2 LINE L1 6129 6157 -7 364 211 14 0 chrX 12292935 12293006 -164681134 + Charlie2 DNA MER1_type 2787 2858 -4 1848 166 3 46 chrX 12293032 12293357 -164680783 - AluJb SINE Alu -1 311 1 1043 166 0 18 chrX 12295107 12295276 -164678864 + FRAM SINE Alu 1 163 -13 2133 197 49 14 chrX 12295580 12296026 -164678114 + MLT1C LTR MaLR 6 467 0 728 179 205 26 chrX 12296095 12296285 -164677855 + MIR SINE MIR 29 252 -10 431 169 52 0 chrX 12296703 12296780 -164677360 - MER5A DNA MER1_type -98 91 11 397 242 185 32 chrX 12296797 12296954 -164677186 + MER5A DNA MER1_type 9 189 0 763 223 17 23 chrX 12297007 12297182 -164676958 + MER5B DNA MER1_type 5 178 0 764 255 33 45 chrX 12297280 12297523 -164676617 + MIR SINE MIR 3 242 -20 197 121 0 0 chrX 12297653 12297686 -164676454 + L2 LINE L2 3279 3311 -2 650 191 9 17 chrX 12297767 12297882 -164676258 + MER81 DNA DNA 1 114 0 246 116 0 0 chrX 12298017 12298060 -164676080 + (TG)n Simple_repeat Simple_repeat 1 43 0 807 249 31 35 chrX 12298152 12298381 -164675759 + MIR SINE MIR 35 262 0 298 269 227 0 chrX 12298557 12298698 -164675442 + MER91A DNA MER1_type 18 190 -6 738 271 104 36 chrX 12299741 12300106 -164674034 + MLT1H LTR MaLR 29 418 -131 402 329 79 12 chrX 12300417 12300657 -164673483 + L3 LINE CR1 592 847 -730 28 0 0 0 chrX 12300671 12300699 -164673441 + AT_rich Low_complexity Low_complexity 1 28 0 393 230 22 28 chrX 12300705 12300833 -164673307 + (TATAA)n Simple_repeat Simple_repeat 1 129 -48 200 57 0 29 chrX 12300840 12300875 -164673265 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1851 157 3 20 chrX 12300875 12301166 -164672974 - AluJb SINE Alu -24 288 1 393 230 22 28 chrX 12301166 12301215 -164672925 + (TATAA)n Simple_repeat Simple_repeat 129 177 0 610 238 99 79 chrX 12301225 12301477 -164672663 + L1ME4a LINE L1 5598 5862 -259 498 274 26 32 chrX 12301477 12301667 -164672473 + MER5A DNA MER1_type 1 189 0 610 238 99 79 chrX 12301667 12301818 -164672322 + L1ME4a LINE L1 5862 6009 -112 309 335 158 28 chrX 12301951 12302598 -164671542 - L2 LINE L2 -815 2499 1769 494 277 23 15 chrX 12303661 12303791 -164670349 + MIR3 SINE MIR 50 180 -28 1101 308 50 17 chrX 12304811 12305276 -164668864 + MLT1J LTR MaLR 1 480 -31 239 289 74 66 chrX 12305304 12305542 -164668598 - MIR SINE MIR -21 241 3 975 96 7 0 chrX 12305801 12305936 -164668204 - MER97b DNA MER1_type? -874 179 44 556 154 94 17 chrX 12306499 12306616 -164667524 + MER53 DNA DNA 1 126 -63 * 957 123 41 12 chrX 12306612 12306783 -164667357 - MER53 DNA DNA -12 177 2 482 264 107 13 chrX 12306913 12307072 -164667068 + MIR3 SINE MIR 3 176 -32 1816 136 32 6 chrX 12307141 12307457 -164666683 - MER33 DNA MER1_type 0 324 1 2150 88 0 66 chrX 12307483 12307839 -164666301 + AluSg SINE Alu 1 336 0 2357 84 3 16 chrX 12307879 12308188 -164665952 + AluY SINE Alu 1 305 -6 3234 170 68 38 chrX 12308339 12308967 -164665173 - MER82 DNA MER2_type 0 653 7 2908 156 88 7 chrX 12308970 12309514 -164664626 - L1MC3 LINE L1 -9 7776 7189 362 229 32 21 chrX 12309515 12309608 -164664532 - MLT1F1 LTR MaLR -395 154 50 850 160 7 0 chrX 12309612 12309762 -164664378 - L1MC3 LINE L1 -696 7089 6939 881 284 25 0 chrX 12310116 12310352 -164663788 - MIR SINE MIR -1 261 20 1740 175 0 7 chrX 12310934 12311219 -164662921 + AluJo SINE Alu 7 289 -23 310 198 100 69 chrX 12311284 12311415 -164662725 - MLT1J2 LTR MaLR -38 408 279 225 303 20 20 chrX 12311441 12311540 -164662600 - MLT1I LTR MaLR -204 205 107 189 339 0 0 chrX 12312051 12312107 -164662033 + MIR SINE MIR 72 127 -81 617 195 0 16 chrX 12312218 12312341 -164661799 + L1ME3A LINE L1 6044 6164 -6 462 229 130 0 chrX 12313315 12313446 -164660694 + MIR SINE MIR 100 247 -15 788 253 5 0 chrX 12313959 12314145 -164659995 - LTR16C LTR ERVL 0 491 305 522 328 61 0 chrX 12314119 12314299 -164659841 - LTR16C LTR ERVL -298 193 3 * 1147 288 65 83 chrX 12315906 12316921 -164657219 + L1MEd LINE L1 47 1132 -1358 450 0 0 0 chrX 12316921 12316971 -164657169 + (GA)n Simple_repeat Simple_repeat 1 50 0 1147 288 65 83 chrX 12316971 12317298 -164656842 + L1MEd LINE L1 1132 1463 -1027 438 243 5 3 chrX 12317306 12317427 -164656713 - MLT1J1 LTR MaLR -325 121 1 6852 112 14 4 chrX 12317670 12320897 -164653243 + L1PA11 LINE L1 2857 6170 -4 762 273 24 57 chrX 12321113 12321169 -164652971 - L2 LINE L2 0 3313 3257 1495 134 0 0 chrX 12321169 12321378 -164652762 - MER3 DNA MER1_type 0 209 1 762 273 24 57 chrX 12321378 12321618 -164652522 - L2 LINE L2 -56 3257 3027 1239 222 45 62 chrX 12321618 12321970 -164652170 - MLT1J1 LTR MaLR 0 446 101 498 262 10 0 chrX 12321976 12322079 -164652061 + MER81 DNA DNA 8 111 -3 388 265 30 66 chrX 12322219 12322385 -164651755 - L2 LINE L2 -300 3013 2854 346 299 198 5 chrX 12322386 12322583 -164651557 - L3 LINE CR1 -969 608 374 2175 253 24 33 chrX 12322598 12323052 -164651088 + MER69B DNA AcHobo 2 451 -218 2837 129 39 0 chrX 12323052 12323462 -164650678 - MSTC LTR MaLR -2 426 1 2175 253 24 33 chrX 12323462 12323582 -164650558 + MER69B DNA AcHobo 451 571 -98 1594 204 101 21 chrX 12323602 12323765 -164650375 + MLT1C LTR MaLR 8 157 -310 2659 104 23 0 chrX 12323765 12324119 -164650021 + THE1B LTR MaLR 1 362 -2 1594 204 101 21 chrX 12324119 12324381 -164649759 + MLT1C LTR MaLR 157 467 0 2262 186 48 30 chrX 12324385 12324922 -164649218 + MER69B DNA AcHobo 661 1207 -19 515 260 50 64 chrX 12325077 12325296 -164648844 - MER20B DNA MER1_type -3 216 1 197 275 14 14 chrX 12325453 12325522 -164648618 - MER5B DNA MER1_type -104 74 6 1198 181 5 14 chrX 12325527 12325742 -164648398 + MER20 DNA MER1_type 7 219 0 1605 243 45 56 chrX 12326196 12326710 -164647430 - L1MC4a LINE L1 -1979 5829 5322 1310 161 0 22 chrX 12326711 12327070 -164647070 - AluJb SINE Alu 0 312 82 673 312 75 13 chrX 12328051 12328359 -164645781 - L2 LINE L2 -1416 1898 1572 251 239 113 0 chrX 12328361 12328432 -164645708 + MER45A DNA AcHobo 3 81 -97 481 236 9 0 chrX 12331088 12331194 -164642946 + MER45A DNA AcHobo 46 152 -26 1019 213 80 0 chrX 12331205 12331468 -164642672 - L2 LINE L2 -1734 1580 1297 3316 263 93 16 chrX 12331722 12333068 -164641072 + L2 LINE L2 1849 3301 -12 231 224 0 53 chrX 12333068 12333144 -164640996 - MLT1J LTR MaLR -330 181 110 * 508 200 20 10 chrX 12333086 12333186 -164640954 - LTR67 LTR ERVL -387 170 70 829 204 60 36 chrX 12334460 12334702 -164639438 + MLT1F1 LTR MaLR 313 567 0 279 333 20 48 chrX 12334702 12334849 -164639291 - L2 LINE L2 -983 2331 2189 195 42 0 0 chrX 12334851 12334875 -164639265 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 1871 269 55 3 chrX 12334909 12335478 -164638662 + L2 LINE L2 2013 2610 -704 6262 189 48 30 chrX 12335562 12337342 -164636798 - L1MD1 LINE L1 -3 6633 4789 2173 120 3 0 chrX 12337342 12337634 -164636506 - AluSx SINE Alu -19 293 1 6262 189 48 30 chrX 12337634 12338474 -164635666 - L1MD1 LINE L1 -1847 4789 3965 2108 104 23 10 chrX 12338474 12338781 -164635359 - AluSx SINE Alu -1 311 1 10904 203 82 21 chrX 12338781 12342242 -164631898 - L1MD1 LINE L1 -2857 3683 15 2227 135 0 0 chrX 12342939 12343251 -164630889 - AluSx SINE Alu 0 312 1 548 250 24 62 chrX 12343345 12343553 -164630587 - MIR SINE MIR 0 262 63 354 98 0 0 chrX 12344292 12344343 -164629797 + (TG)n Simple_repeat Simple_repeat 1 51 0 885 167 13 0 chrX 12345186 12345336 -164628804 + MER5A DNA MER1_type 4 155 -34 181 159 45 0 chrX 12345349 12345393 -164628747 + L2 LINE L2 3015 3060 -212 501 232 16 20 chrX 12345509 12345760 -164628380 + CT-rich Low_complexity Low_complexity 1 250 0 1747 192 3 0 chrX 12346484 12346781 -164627359 + AluJo SINE Alu 1 298 -14 633 205 29 44 chrX 12346956 12347161 -164626979 - Charlie7 DNA MER1_type -1 2611 2410 286 244 22 11 chrX 12347144 12347234 -164626906 - Charlie7 DNA MER1_type -1888 724 634 * 771 74 0 0 chrX 12347378 12347486 -164626654 + LTR9B LTR ERV1 451 558 -86 1138 264 42 27 chrX 12347551 12347653 -164626487 + LTR16C LTR ERVL 153 252 -239 2672 107 25 3 chrX 12347653 12348009 -164626131 + THE1B LTR MaLR 1 364 0 1138 264 42 27 chrX 12348009 12348240 -164625900 + LTR16C LTR ERVL 252 491 0 1558 236 62 24 chrX 12348250 12348437 -164625703 - Charlie7 DNA MER1_type -2002 610 432 2357 38 52 7 chrX 12348437 12348726 -164625414 - AluY SINE Alu -9 302 1 1558 236 62 24 chrX 12348726 12349005 -164625135 - Charlie7 DNA MER1_type -2180 432 126 189 0 0 0 chrX 12349007 12349028 -164625112 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 296 213 38 25 chrX 12349032 12349112 -164625028 - Charlie7 DNA MER1_type -2531 81 1 692 219 12 6 chrX 12351729 12351893 -164622247 - MER97a DNA MER1_type? -2 892 728 9367 232 48 20 chrX 12351893 12354254 -164619886 + L1MD2 LINE L1 11 2305 -4101 1902 140 0 14 chrX 12354254 12354581 -164619559 + AluSx SINE Alu 1 323 0 9367 232 48 20 chrX 12354581 12357148 -164616992 + L1MD2 LINE L1 2305 5207 -1199 6417 155 7 28 chrX 12357159 12358388 -164615752 + L1MD2 LINE L1 5417 6619 0 385 309 37 56 chrX 12359024 12359348 -164614792 + L1ME4a LINE L1 5602 5919 -202 22 0 0 0 chrX 12359485 12359507 -164614633 + AT_rich Low_complexity Low_complexity 1 22 0 351 266 0 0 chrX 12360994 12361118 -164613022 + (TG)n Simple_repeat Simple_repeat 2 125 0 366 324 27 27 chrX 12362163 12362348 -164611792 - MLT1L LTR MaLR 0 615 431 528 264 16 0 chrX 12362395 12362520 -164611620 - MER94 DNA DNA -4 130 4 324 349 45 0 chrX 12363748 12363880 -164610260 + L2 LINE L2 2224 2361 -953 866 278 208 5 chrX 12363881 12364281 -164609859 + LTR16C LTR ERVL 1 481 -10 385 304 149 36 chrX 12364300 12364715 -164609425 + L2 LINE L2 2372 2833 -481 271 283 72 133 chrX 12364795 12365141 -164608999 + L2 LINE L2 2947 3271 -1 1460 154 75 0 chrX 12366178 12366431 -164607709 - ORSL DNA AcHobo 0 275 4 249 301 0 0 chrX 12366860 12366933 -164607207 + L2 LINE L2 3200 3272 0 207 173 0 0 chrX 12367331 12367383 -164606757 + C-rich Low_complexity Low_complexity 3 54 0 249 246 16 0 chrX 12367479 12367540 -164606600 + (CGG)n Simple_repeat Simple_repeat 1 62 0 23 78 0 0 chrX 12367642 12367693 -164606447 + GC_rich Low_complexity Low_complexity 1 51 0 91 90 0 0 chrX 12367711 12367956 -164606184 + GC_rich Low_complexity Low_complexity 1 245 0 243 247 225 0 chrX 12370380 12370469 -164603671 - MIR SINE MIR -48 214 106 329 241 36 0 chrX 12370562 12370645 -164603495 + MIR SINE MIR 103 188 -74 413 242 30 0 chrX 12371142 12371241 -164602899 - MIR SINE MIR -74 188 87 204 163 0 0 chrX 12371853 12371896 -164602244 + (CA)n Simple_repeat Simple_repeat 2 44 0 2318 158 0 3 chrX 12372118 12372480 -164601660 - MLT1A1 LTR MaLR 0 365 5 300 125 0 0 chrX 12372679 12372719 -164601421 + MER3 DNA MER1_type 1 40 -169 1265 199 70 0 chrX 12372727 12373029 -164601111 + MER33 DNA MER1_type 2 324 0 855 228 107 0 chrX 12375107 12375304 -164598836 - MER20 DNA MER1_type 0 219 2 24 0 0 0 chrX 12376956 12376980 -164597160 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chrX 12377097 12377131 -164597009 + AT_rich Low_complexity Low_complexity 1 34 0 243 0 0 0 chrX 12377395 12377422 -164596718 + (TC)n Simple_repeat Simple_repeat 1 27 0 191 361 71 19 chrX 12377970 12378125 -164596015 + MIR3 SINE MIR 37 199 -9 931 245 42 0 chrX 12378642 12378879 -164595261 - MIR SINE MIR -5 257 11 388 178 0 0 chrX 12378933 12379006 -164595134 + L1ME3A LINE L1 6093 6165 -5 443 299 132 0 chrX 12379048 12379245 -164594895 - MLT1L LTR MaLR -54 561 339 1980 248 22 0 chrX 12380059 12380470 -164593670 - LTR16C LTR ERVL 0 491 72 28 29 0 0 chrX 12380829 12380864 -164593276 + AT_rich Low_complexity Low_complexity 1 35 0 2439 74 10 0 chrX 12381118 12381415 -164592725 + AluSc SINE Alu 1 300 -9 424 241 0 0 chrX 12381672 12381755 -164592385 - FRAM/FAM SINE Alu -93 83 1 1280 255 50 13 chrX 12381869 12382246 -164591894 - L1ME3A LINE L1 -15 6155 5765 674 275 59 8 chrX 12382372 12382608 -164591532 - MIR SINE MIR -5 257 10 4484 118 16 20 chrX 12382732 12383433 -164590707 - L1PA15 LINE L1 0 6165 5468 1869 85 33 0 chrX 12383577 12383847 -164590293 + L1MA1 LINE L1 5960 6238 -64 24 32 0 0 chrX 12383868 12383899 -164590241 + AT_rich Low_complexity Low_complexity 1 31 0 5604 63 1 6 chrX 12383934 12384637 -164589503 - L1PA6 LINE L1 0 6154 5455 1339 162 97 17 chrX 12384697 12384987 -164589153 - MER33 DNA MER1_type -11 313 1 596 231 163 0 chrX 12384999 12385159 -164588981 + MER5A DNA MER1_type 4 189 0 311 189 0 14 chrX 12385267 12385341 -164588799 + CT-rich Low_complexity Low_complexity 1 73 0 240 269 0 0 chrX 12385753 12385805 -164588335 + CT-rich Low_complexity Low_complexity 2 53 0 1645 214 27 0 chrX 12386334 12386665 -164587475 + MER58B DNA MER1_type 2 341 0 763 194 73 6 chrX 12386675 12386840 -164587300 - MER5B DNA MER1_type 0 178 3 180 0 0 0 chrX 12387022 12387042 -164587098 + (T)n Simple_repeat Simple_repeat 1 20 0 234 333 14 35 chrX 12387401 12387542 -164586598 + L2 LINE L2 3133 3270 -2 1779 186 80 0 chrX 12387758 12388096 -164586044 - MLT1A1 LTR MaLR 0 365 1 484 292 7 26 chrX 12388337 12388491 -164585649 + L2 LINE L2 3163 3313 0 1500 200 141 76 chrX 12388586 12389062 -164585078 + Charlie4a DNA MER1_type 1 507 -1 351 186 174 0 chrX 12389104 12389190 -164584950 + L1ME3A LINE L1 6064 6164 -6 349 301 56 67 chrX 12389193 12389432 -164584708 + MLT1L LTR MaLR 139 393 -195 856 305 70 59 chrX 12390567 12391378 -164582762 - ERVL LTR ERVL -17 5341 4540 917 296 92 58 chrX 12391379 12391936 -164582204 - ERVL LTR ERVL -757 4239 3667 360 271 17 8 chrX 12391948 12392066 -164582074 - MLT1I LTR MaLR -290 119 1 2684 24 0 3 chrX 12393039 12393336 -164580804 - AluY SINE Alu -15 296 1 195 42 0 0 chrX 12394021 12394045 -164580095 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 204 111 0 0 chrX 12394044 12394080 -164580060 + (CA)n Simple_repeat Simple_repeat 1 36 0 1389 154 14 107 chrX 12394772 12395128 -164579012 - MER33 DNA MER1_type 0 324 2 865 271 9 5 chrX 12395702 12395916 -164578224 - MIR SINE MIR -21 241 27 1192 346 117 25 chrX 12396077 12396944 -164577196 + L3 LINE CR1 221 1166 -411 615 209 79 40 chrX 12396945 12397122 -164577018 - MER63A DNA MER1_type 0 210 27 200 111 28 0 chrX 12397195 12397231 -164576909 + A-rich Low_complexity Low_complexity 1 37 0 258 267 216 0 chrX 12397541 12397657 -164576483 - MER5A DNA MER1_type -2 187 47 547 209 8 30 chrX 12398208 12398342 -164575798 - L2 LINE L2 -3 3310 3180 354 240 200 0 chrX 12400869 12400994 -164573146 - MIR SINE MIR -93 169 20 579 209 93 14 chrX 12401948 12402087 -164572053 + MER5A DNA MER1_type 34 183 -6 766 203 135 69 chrX 12402254 12402345 -164571795 - Charlie4a DNA MER1_type -1490 471 387 2141 140 0 3 chrX 12402345 12402653 -164571487 + AluSx SINE Alu 1 307 -5 766 203 135 69 chrX 12402653 12402921 -164571219 - Charlie4a DNA MER1_type -1574 387 88 2475 173 26 16 chrX 12402921 12403413 -164570727 + MLT1D LTR MaLR 1 497 -8 426 236 22 0 chrX 12403421 12403510 -164570630 - Charlie4a DNA MER1_type -416 92 2 473 251 39 50 chrX 12403525 12403704 -164570436 + MLT1J2 LTR MaLR 272 448 -2 25 0 0 0 chrX 12404998 12405023 -164569117 + AT_rich Low_complexity Low_complexity 1 25 0 458 300 65 24 chrX 12405162 12405502 -164568638 + L1ME3 LINE L1 4363 4716 -1430 841 186 13 19 chrX 12405730 12405886 -164568254 - MLT1E LTR MaLR -438 155 1 1005 313 47 17 chrX 12405894 12406421 -164567719 + L1ME3 LINE L1 5307 5849 -321 2014 145 0 16 chrX 12406460 12406771 -164567369 + AluSx SINE Alu 7 312 0 274 190 4 16 chrX 12406797 12406879 -164567261 + L1ME3 LINE L1 5870 5951 -211 180 0 0 0 chrX 12406986 12407006 -164567134 + (TTA)n Simple_repeat Simple_repeat 2 21 0 816 168 189 5 chrX 12407415 12407600 -164566540 - MER20 DNA MER1_type 0 219 1 951 239 139 42 chrX 12408905 12409458 -164564682 + L1ME4a LINE L1 5510 6116 -5 222 176 0 0 chrX 12409982 12410033 -164564107 + CT-rich Low_complexity Low_complexity 1 51 0 739 165 38 15 chrX 12410797 12411069 -164563071 + MLT1A1 LTR MaLR 1 365 0 577 261 20 0 chrX 12411121 12411274 -164562866 + MIR SINE MIR 97 252 -10 840 203 90 47 chrX 12411338 12411594 -164562546 - L1ME3 LINE L1 -331 5831 5565 203 265 60 84 chrX 12411620 12411703 -164562437 - L2 LINE L2 -32 3240 3160 1035 186 73 0 chrX 12412344 12412548 -164561592 - MER20 DNA MER1_type 0 219 1 1125 192 0 19 chrX 12413170 12413378 -164560762 + AluJb SINE Alu 86 289 -23 190 229 197 0 chrX 12413383 12413444 -164560696 - L2 LINE L2 -21 3251 3179 201 341 110 0 chrX 12413505 12413596 -164560544 + MIR3 SINE MIR 57 157 -51 575 243 85 0 chrX 12413602 12413779 -164560361 + MER117 DNA MER1_type 6 197 0 231 36 0 0 chrX 12414655 12414683 -164559457 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 311 91 0 0 chrX 12416199 12416243 -164557897 + MIR SINE MIR 106 149 -59 196 350 75 62 chrX 12416252 12416412 -164557728 - L2 LINE L2 -9 3263 3102 789 220 162 0 chrX 12416495 12416686 -164557454 + MIR SINE MIR 20 241 -21 1323 240 88 6 chrX 12417506 12417835 -164556305 + MER63 DNA MER1_type 694 1049 -11 259 268 39 105 chrX 12417846 12417999 -164556141 + MIR SINE MIR 90 232 -30 466 258 227 15 chrX 12418034 12418232 -164555908 + MIR SINE MIR 1 240 -22 747 237 87 138 chrX 12419059 12419531 -164554609 + MLT1J2 LTR MaLR 1 448 -2 508 270 29 17 chrX 12419591 12419765 -164554375 - MER112 DNA MER1_type -84 176 1 1634 286 44 24 chrX 12419935 12420439 -164553701 + MLT1K LTR MaLR 67 580 -8 180 0 0 0 chrX 12420468 12420488 -164553652 + (T)n Simple_repeat Simple_repeat 1 20 0 304 279 0 0 chrX 12420701 12420769 -164553371 - L2 LINE L2 -1 3271 3204 447 281 31 31 chrX 12420796 12420956 -164553184 - MIR SINE MIR 0 262 103 595 304 91 12 chrX 12421278 12421521 -164552619 + MIR SINE MIR 1 262 0 251 292 28 0 chrX 12421530 12421602 -164552538 + MIR3 SINE MIR 109 182 -26 385 249 0 109 chrX 12421968 12422169 -164551971 + G-rich Low_complexity Low_complexity 2 180 0 264 307 53 0 chrX 12422593 12422668 -164551472 - L2 LINE L2 -25 3247 3169 576 306 61 15 chrX 12422695 12422891 -164551249 + MLT1G LTR MaLR 30 234 -321 1032 42 4 4 chrX 12422893 12423009 -164551131 - L1PA7 LINE L1 -392 5762 5644 2942 74 3 3 chrX 12423009 12423373 -164550767 + L1PA7 LINE L1 5788 6153 -1 1032 42 4 4 chrX 12423373 12423390 -164550750 - L1P3 LINE L1 -509 5645 5629 1401 231 44 33 chrX 12423434 12423794 -164550346 + MLT1G LTR MaLR 227 590 0 539 320 34 17 chrX 12424120 12424298 -164549842 - MIR3 SINE MIR -5 203 23 697 300 22 9 chrX 12424363 12424586 -164549554 + MIR SINE MIR 23 248 -14 656 112 10 10 chrX 12424673 12424793 -164549347 - FLAM_C SINE Alu 0 143 32 258 336 36 29 chrX 12425433 12425570 -164548570 - L2 LINE L2 0 3313 3176 291 311 49 24 chrX 12425942 12426106 -164548034 - L2 LINE L2 -560 2754 2587 354 137 0 0 chrX 12426595 12426646 -164547494 - LTR16C LTR ERVL -7 484 434 631 131 0 20 chrX 12426647 12426746 -164547394 - Tigger7 DNA MER2_type -1 2490 2394 1356 199 27 15 chrX 12426749 12427011 -164547129 - Tigger7 DNA MER2_type -2222 265 1 999 261 151 13 chrX 12427011 12427393 -164546747 - LTR16C LTR ERVL -56 435 1 2214 95 3 0 chrX 12427567 12427903 -164546237 - AluSq SINE Alu 0 337 1 238 277 73 58 chrX 12428291 12428428 -164545712 - MER5B DNA MER1_type -37 141 3 382 223 36 45 chrX 12428295 12428407 -164545733 + MER5A DNA MER1_type 50 160 -29 237 296 11 11 chrX 12428450 12428538 -164545602 + GA-rich Low_complexity Low_complexity 3 90 0 738 188 227 0 chrX 12429135 12429289 -164544851 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chrX 12429781 12429803 -164544337 + AT_rich Low_complexity Low_complexity 1 22 0 2244 107 10 7 chrX 12430250 12430560 -164543580 - AluY SINE Alu 0 311 1 582 286 118 35 chrX 12430990 12431245 -164542895 - MLT1J2 LTR MaLR -118 332 57 2822 186 36 19 chrX 12432486 12433014 -164541126 + MLT1F LTR MaLR 4 540 -2 1476 176 14 7 chrX 12433123 12433401 -164540739 - L1MD3 LINE L1 -189 7806 7527 230 352 14 0 chrX 12433440 12433511 -164540629 - MIR SINE MIR -93 115 44 190 200 0 0 chrX 12433774 12433809 -164540331 - L2 LINE L2 -21 3251 3217 360 257 31 43 chrX 12433893 12434049 -164540091 + MLT2E LTR ERVL 37 187 -476 180 241 398 0 chrX 12434719 12434802 -164539338 + L2 LINE L2 3137 3252 -20 1661 172 130 17 chrX 12435103 12435464 -164538676 - LTR37A LTR ERV1 -23 403 2 2399 244 72 25 chrX 12435567 12435931 -164538209 + L1ME2 LINE L1 5191 5536 -628 2611 110 78 5 chrX 12435931 12436330 -164537810 - MSTA LTR MaLR 0 428 1 2399 244 72 25 chrX 12436330 12436805 -164537335 + L1ME2 LINE L1 5536 6078 -86 362 200 29 0 chrX 12436809 12436879 -164537261 + Tigger5 DNA MER2_type 1 72 -2251 430 197 40 0 chrX 12436935 12437011 -164537129 + Tigger5 DNA MER2_type 2245 2323 0 2206 128 25 71 chrX 12437352 12437744 -164536396 - THE1C LTR MaLR 0 375 2 1047 170 49 40 chrX 12437992 12438258 -164535882 - MLT1A1 LTR MaLR 0 365 48 1977 154 0 7 chrX 12438259 12438552 -164535588 - AluJb SINE Alu -21 291 1 357 43 0 0 chrX 12438665 12438712 -164535428 + (TG)n Simple_repeat Simple_repeat 1 47 0 338 61 20 0 chrX 12438712 12438761 -164535379 + (GA)n Simple_repeat Simple_repeat 2 51 0 365 245 69 0 chrX 12439439 12439541 -164534599 - LTR16A LTR ERVL -105 345 237 1767 124 4 40 chrX 12439541 12439814 -164534326 - AluSx SINE Alu -13 299 37 301 225 0 28 chrX 12440078 12440149 -164533991 + MIR SINE MIR 139 207 -55 313 304 124 52 chrX 12440550 12440696 -164533444 - L1 LINE L1 -3403 2743 2609 201 39 0 0 chrX 12440696 12440722 -164533418 + (TA)n Simple_repeat Simple_repeat 1 26 0 313 304 124 52 chrX 12440722 12440821 -164533319 - L1 LINE L1 -3537 2609 2519 1829 158 0 14 chrX 12440821 12441136 -164533004 - AluJb SINE Alu 0 313 3 313 304 124 52 chrX 12441136 12441402 -164532738 - L1 LINE L1 -3627 2519 2193 2266 111 71 31 chrX 12441719 12442069 -164532071 - THE1B LTR MaLR 0 364 1 277 109 27 45 chrX 12442626 12442736 -164531404 + (CAAA)n Simple_repeat Simple_repeat 3 110 0 405 372 55 7 chrX 12442892 12443166 -164530974 + L2 LINE L2 2100 2386 -928 362 270 17 9 chrX 12443168 12443283 -164530857 + L1ME LINE L1 5612 5727 -435 * 2294 251 98 46 chrX 12443264 12443380 -164530760 + L1ME LINE L1 3781 3890 -2256 2338 99 0 0 chrX 12443380 12443672 -164530468 + AluSx SINE Alu 3 294 -18 2294 251 98 46 chrX 12443672 12444649 -164529491 + L1ME LINE L1 3890 4931 -1215 1135 255 108 38 chrX 12444693 12445117 -164529023 - LTR16A1 LTR ERVL -3 454 1 290 197 0 61 chrX 12446214 12446280 -164527860 - L2 LINE L2 -1 3312 3251 339 298 51 37 chrX 12446376 12446591 -164527549 + L1ME LINE L1 5512 5729 -392 399 260 16 120 chrX 12447732 12447803 -164526337 + MIR SINE MIR 50 127 -135 1447 258 82 26 chrX 12447803 12448229 -164525911 - MLT1J2 LTR MaLR 0 450 1 399 260 16 120 chrX 12448229 12448349 -164525791 + MIR SINE MIR 127 221 -41 189 0 0 0 chrX 12449767 12449788 -164524352 + (T)n Simple_repeat Simple_repeat 1 21 0 241 268 73 56 chrX 12450152 12450295 -164523845 + MIR3 SINE MIR 14 157 -64 197 248 229 9 chrX 12450311 12450416 -164523724 + MIR SINE MIR 2 129 -133 1756 153 21 11 chrX 12450507 12450789 -164523351 - L1MC1 LINE L1 -6 6327 6043 1841 127 41 14 chrX 12450789 12451081 -164523059 - Tigger1 DNA MER2_type 0 2418 2119 * 4789 106 76 1 chrX 12451060 12451761 -164522379 - Tigger1 DNA MER2_type -1665 753 1 4998 133 13 3 chrX 12451762 12452544 -164521596 - L1MC1 LINE L1 -290 6043 5254 2222 176 15 27 chrX 12452546 12452558 -164521582 + MLT2B2 LTR ERVL 1 12 -503 785 42 0 0 chrX 12452558 12452653 -164521487 - L1PA7 LINE L1 -1 6153 6059 2222 176 15 27 chrX 12452653 12453053 -164521087 + MLT2B2 LTR ERVL 12 393 -122 6679 249 30 29 chrX 12453053 12454810 -164519330 - L1MEc LINE L1 -2295 3920 2205 661 169 66 0 chrX 12454810 12454946 -164519194 - L1MA8 LINE L1 -1 6290 6146 6679 249 30 29 chrX 12454946 12455820 -164518320 - L1MEc LINE L1 -4010 2205 1333 552 257 0 46 chrX 12455824 12455976 -164518164 + MIR SINE MIR 114 258 -4 701 285 18 36 chrX 12455990 12456211 -164517929 - MIR SINE MIR -34 228 12 416 244 68 91 chrX 12456350 12456526 -164517614 + MIR SINE MIR 86 257 -5 1992 131 0 32 chrX 12456648 12456962 -164517178 - AluJb SINE Alu -8 304 1 236 388 54 14 chrX 12457680 12457827 -164516313 - L2 LINE L2 -5 3267 3115 1393 264 18 28 chrX 12457853 12458250 -164515890 - LTR16C LTR ERVL -1 490 98 247 325 44 75 chrX 12458535 12458787 -164515353 - L2 LINE L2 -407 2907 2664 733 265 209 13 chrX 12458788 12459219 -164514921 + LTR50 LTR ERVL 193 794 -1 1015 233 35 22 chrX 12459466 12459694 -164514446 - MIR SINE MIR -22 240 10 678 204 11 175 chrX 12460562 12460836 -164513304 + MIR SINE MIR 2 230 -32 1535 164 27 38 chrX 12461220 12461512 -164512628 - AluJb SINE Alu -23 289 1 1760 172 0 10 chrX 12462157 12462459 -164511681 - AluJo SINE Alu -3 309 11 5757 137 59 3 chrX 12462473 12463838 -164510302 - L1MA7 LINE L1 0 6291 4848 236 236 66 66 chrX 12463861 12463967 -164510173 - MLT1L LTR MaLR -360 255 150 2264 189 90 22 chrX 12464106 12464605 -164509535 + MLT1F LTR MaLR 10 590 0 886 145 0 8 chrX 12464832 12464956 -164509184 + FLAM_A SINE Alu 2 124 -9 916 267 105 50 chrX 12465206 12465635 -164508505 - L1ME4a LINE L1 -1 6120 5716 1808 153 27 3 chrX 12465635 12465936 -164508204 - AluJo SINE Alu 0 312 5 916 267 105 50 chrX 12465936 12466254 -164507886 - L1ME4a LINE L1 -405 5716 5297 4239 174 31 46 chrX 12466583 12467304 -164506836 - L1MCb LINE L1 -4623 1941 1211 2129 97 49 0 chrX 12467304 12467592 -164506548 - AluSp SINE Alu -11 302 1 2215 118 3 0 chrX 12467598 12467903 -164506237 - AluSx SINE Alu -6 306 1 4239 174 31 46 chrX 12467903 12468463 -164505677 - L1MCb LINE L1 -5358 1206 566 181 178 0 44 chrX 12468631 12468676 -164505464 - L3b LINE CR1 -316 1267 1225 449 254 41 25 chrX 12469563 12469747 -164504393 - MLT1I LTR MaLR 0 409 263 21 36 0 0 chrX 12470731 12470759 -164503381 + AT_rich Low_complexity Low_complexity 1 28 0 198 220 0 0 chrX 12472039 12472098 -164502042 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 212 47 12 chrX 12472713 12472798 -164501342 - L1ME4a LINE L1 -1488 4658 4571 823 146 28 0 chrX 12473031 12473175 -164500965 - MER96B DNA MER1_type? -241 176 29 1271 181 45 57 chrX 12473462 12473793 -164500347 + MER33 DNA MER1_type 1 324 0 940 261 203 15 chrX 12474015 12474483 -164499657 + LTR67 LTR ERVL 2 557 0 2364 95 3 0 chrX 12474782 12475086 -164499054 - AluSx SINE Alu -7 305 1 183 80 0 0 chrX 12475145 12475170 -164498970 + (CA)n Simple_repeat Simple_repeat 2 26 0 1011 263 28 9 chrX 12475340 12475726 -164498414 - LTR16C LTR ERVL -8 483 61 304 289 50 16 chrX 12475838 12475959 -164498181 - L2 LINE L2 0 3313 3189 181 327 0 0 chrX 12476147 12476199 -164497941 - MIR SINE MIR -131 131 80 724 218 29 11 chrX 12476305 12476479 -164497661 + L1ME LINE L1 5519 5695 -426 21 71 0 0 chrX 12476529 12476571 -164497569 + AT_rich Low_complexity Low_complexity 1 42 0 248 152 0 22 chrX 12476863 12476909 -164497231 + L1ME4a LINE L1 6077 6121 0 180 0 0 0 chrX 12478889 12478909 -164495231 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 614 300 19 24 chrX 12479312 12479522 -164494618 + MLT1H LTR MaLR 24 232 -317 222 355 9 28 chrX 12480097 12480204 -164493936 - L3 LINE CR1 -1040 537 433 1852 167 89 23 chrX 12480747 12481184 -164492956 - Charlie2 DNA MER1_type -4 2858 2393 468 189 56 11 chrX 12481279 12481369 -164492771 - Charlie2 DNA MER1_type -2520 342 249 282 211 101 30 chrX 12481689 12481815 -164492325 + MIR SINE MIR 19 146 -62 4496 201 81 15 chrX 12481929 12482133 -164492007 - L1MD2 LINE L1 0 6359 6170 189 0 0 0 chrX 12482133 12482154 -164491986 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 201 81 15 chrX 12482154 12482954 -164491186 - L1MD2 LINE L1 -189 6170 5424 203 0 0 36 chrX 12482954 12482982 -164491158 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1675 43 0 0 chrX 12482982 12483170 -164490970 - L1PA3 LINE L1 -16 6139 5952 4496 201 81 15 chrX 12483170 12483385 -164490755 - L1MD2 LINE L1 -935 5424 5224 207 0 0 0 chrX 12483385 12483408 -164490732 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 * 252 0 0 0 chrX 12483407 12483435 -164490705 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 4496 201 81 15 chrX 12483408 12483457 -164490683 - L1MD2 LINE L1 -1135 5224 5030 * 43883 32 21 1 chrX 12483435 12488825 -164485315 - L1PA2 LINE L1 -9 6146 621 5495 15 0 3 chrX 12488825 12489419 -164484721 - L1PA2 LINE L1 0 6155 5564 43883 32 21 1 chrX 12489419 12490051 -164484089 - L1PA2 LINE L1 -5534 621 3 268 32 0 0 chrX 12490154 12490185 -164483955 + U2 snRNA snRNA 6 36 -152 3282 237 48 21 chrX 12490190 12491183 -164482957 - L1MD2 LINE L1 -1186 4960 3941 1379 164 0 0 chrX 12491183 12491403 -164482737 + AluJb SINE Alu 86 305 -7 2400 158 92 13 chrX 12491682 12492130 -164482010 - MLT1D LTR MaLR -2 503 21 321 316 43 8 chrX 12492196 12492313 -164481827 + MIR SINE MIR 20 140 -122 890 278 91 25 chrX 12492417 12492781 -164481359 + MLT1J1 LTR MaLR 46 433 -13 530 130 130 0 chrX 12492909 12493009 -164481131 - MER5A DNA MER1_type 0 189 77 2799 157 0 2 chrX 12493013 12493465 -164480675 - MER41B LTR ERV1 0 635 185 1069 41 0 14 chrX 12493471 12493616 -164480524 + (TTC)n Simple_repeat Simple_repeat 1 143 0 28 50 0 17 chrX 12493634 12493666 -164480474 + AT_rich Low_complexity Low_complexity 1 33 -26 2228 93 0 0 chrX 12493666 12493945 -164480195 + AluSx SINE Alu 14 292 -20 28 50 0 17 chrX 12493945 12493972 -164480168 + AT_rich Low_complexity Low_complexity 33 59 0 2363 77 24 0 chrX 12493972 12494310 -164479830 - L1PA14 LINE L1 -4 6157 5654 1275 104 6 0 chrX 12494310 12494492 -164479648 - MER41B LTR ERV1 -452 183 1 335 278 8 87 chrX 12494532 12494658 -164479482 + L2 LINE L2 3136 3251 -21 881 209 16 33 chrX 12496752 12496934 -164477206 + AluJo SINE Alu 115 293 -19 1604 182 61 73 chrX 12497244 12497639 -164476501 + MLT1B LTR MaLR 1 390 0 2178 61 2 1 chrX 12498013 12498521 -164475619 + MER41A LTR ERV1 1 554 0 459 281 170 7 chrX 12498578 12498731 -164475409 + MER5A DNA MER1_type 9 186 -3 432 196 72 0 chrX 12499788 12499885 -164474255 + MER5A DNA MER1_type 9 112 -77 861 204 17 28 chrX 12500074 12500250 -164473890 + MER5B DNA MER1_type 1 174 -4 2152 215 26 49 chrX 12500614 12501144 -164472996 + L1M2b LINE L1 1 518 -6691 * 5680 134 16 1 chrX 12501143 12502198 -164471942 + L1M2 LINE L1 4477 5549 -743 367 269 0 0 chrX 12502602 12502680 -164471460 + MLT1J LTR MaLR 6 83 -428 2212 163 79 3 chrX 12502685 12503053 -164471087 - MSTD LTR MaLR 0 396 1 375 256 69 13 chrX 12503055 12503289 -164470851 + MLT1J LTR MaLR 83 466 -33 24 0 0 0 chrX 12503555 12503579 -164470561 + AT_rich Low_complexity Low_complexity 1 24 0 951 193 50 6 chrX 12503871 12504052 -164470088 + MER5A DNA MER1_type 1 189 0 623 204 190 32 chrX 12504231 12504452 -164469688 + MIR SINE MIR 2 257 -5 493 54 14 14 chrX 12504471 12504545 -164469595 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 4031 194 34 16 chrX 12504993 12505830 -164468310 - L1MB7 LINE L1 0 6184 5333 1551 150 143 8 chrX 12506779 12507045 -164467095 - AluJb SINE Alu 0 302 1 21 0 0 0 chrX 12507265 12507286 -164466854 + AT_rich Low_complexity Low_complexity 1 21 0 321 354 76 78 chrX 12507476 12507922 -164466218 - L2 LINE L2 -3 3269 2825 1194 105 6 6 chrX 12509014 12509176 -164464964 - THE1B LTR MaLR 0 364 203 4540 126 16 125 chrX 12509176 12510723 -164463417 - pTR5 LTR ERV1 0 2606 1524 1303 112 0 11 chrX 12510723 12510911 -164463229 - THE1B LTR MaLR -162 202 17 330 214 41 41 chrX 12510930 12511028 -164463112 - L1MC4 LINE L1 -3 8039 7942 1847 208 42 9 chrX 12511140 12511569 -164462571 - L1MC4 LINE L1 -138 7904 7462 324 295 67 9 chrX 12512247 12512352 -164461788 - L2 LINE L2 -1 3271 3161 985 234 148 36 chrX 12512784 12513168 -164460972 + MLT1J2 LTR MaLR 1 427 -23 319 252 43 79 chrX 12513207 12513346 -164460794 + MIR SINE MIR 73 206 -56 447 282 220 14 chrX 12513760 12513969 -164460171 - MIR SINE MIR -1 261 10 209 277 191 21 chrX 12514896 12515037 -164459103 - MIR SINE MIR -70 192 28 27 0 0 0 chrX 12515519 12515546 -164458594 + AT_rich Low_complexity Low_complexity 1 27 0 516 143 0 0 chrX 12515889 12515973 -164458167 - L1MA9 LINE L1 -41 6271 6188 294 216 155 21 chrX 12516871 12516968 -164457172 - L2 LINE L2 0 3313 3204 2586 71 0 0 chrX 12517023 12517334 -164456806 - AluY SINE Alu 0 311 1 459 0 0 0 chrX 12517682 12517733 -164456407 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 777 271 10 10 chrX 12519304 12519503 -164454637 - MIR SINE MIR -62 200 2 247 294 33 22 chrX 12521126 12521218 -164452922 + MIR SINE MIR 96 188 -74 2381 216 110 30 chrX 12522869 12523054 -164451086 + L1MC4a LINE L1 7136 7305 -503 26416 32 0 2 chrX 12523054 12526816 -164447324 + L1PA5 LINE L1 2394 6153 -1 2381 216 110 30 chrX 12526816 12527281 -164446859 + L1MC4a LINE L1 7305 7808 0 200 183 0 17 chrX 12527932 12527992 -164446148 + CT-rich Low_complexity Low_complexity 2 60 0 463 61 0 202 chrX 12528459 12528558 -164445582 + MADE1 DNA Mariner 2 80 0 382 328 11 40 chrX 12529213 12529387 -164444753 + MER5A DNA MER1_type 19 187 -2 899 277 41 4 chrX 12529452 12529694 -164444446 - MIR SINE MIR -10 252 2 490 274 22 30 chrX 12529893 12530028 -164444112 + MIR SINE MIR 1 134 -128 1373 253 31 3 chrX 12530942 12531294 -164442846 + L1ME3A LINE L1 5809 6170 0 1431 276 30 45 chrX 12531439 12531910 -164442230 - LTR16B LTR ERVL 0 464 1 3913 90 4 8 chrX 12532333 12532842 -164441298 - L1PA11 LINE L1 -8 6166 5660 693 154 77 0 chrX 12533112 12533229 -164440911 + L1MDb LINE L1 9 134 -6275 1957 187 42 23 chrX 12533238 12533666 -164440474 + L1MC3 LINE L1 7325 7760 -25 640 176 110 0 chrX 12533677 12533813 -164440327 - MLT-int LTR MaLR -1106 629 479 24 0 0 0 chrX 12533813 12533837 -164440303 + AT_rich Low_complexity Low_complexity 1 24 0 1923 167 0 0 chrX 12533837 12534125 -164440015 + AluJb SINE Alu 2 289 -23 844 238 36 60 chrX 12536214 12536495 -164437645 - MLT1H LTR MaLR -247 302 29 2374 158 10 18 chrX 12536568 12536961 -164437179 - MLT1B LTR MaLR 0 390 1 1361 248 114 11 chrX 12538725 12539277 -164434863 - L1MC4a LINE L1 -1598 6210 5602 1223 121 0 0 chrX 12539284 12539449 -164434691 - AluJo SINE Alu -15 297 133 281 169 0 0 chrX 12539449 12539508 -164434632 + (TA)n Simple_repeat Simple_repeat 2 60 0 1021 116 0 0 chrX 12539508 12539637 -164434503 - AluJo SINE Alu -173 129 1 398 179 8 137 chrX 12539637 12539754 -164434386 - L1MC4a LINE L1 -2202 5606 5505 2078 108 3 29 chrX 12539910 12540225 -164433915 - AluSx SINE Alu -5 307 1 439 250 25 17 chrX 12540250 12540370 -164433770 - L1ME3A LINE L1 -44 6126 6006 1005 226 58 11 chrX 12540450 12540711 -164433429 - L1ME3A LINE L1 -200 5970 5698 850 177 25 13 chrX 12540725 12540883 -164433257 - MLT1D LTR MaLR -345 160 1 6023 115 24 17 chrX 12540937 12542120 -164432020 + L1PA16 LINE L1 4975 6166 0 320 329 81 12 chrX 12543310 12543471 -164430669 + L3 LINE CR1 550 721 -856 201 74 0 0 chrX 12543650 12543677 -164430463 + (GA)n Simple_repeat Simple_repeat 2 28 0 2791 90 8 19 chrX 12544004 12544372 -164429768 - THE1B LTR MaLR 0 364 1 255 196 19 131 chrX 12544401 12544508 -164429632 - MER103 DNA DNA -2 164 70 1453 257 19 6 chrX 12544529 12544840 -164429300 - MLT1I LTR MaLR 0 409 95 898 317 105 17 chrX 12544907 12545272 -164428868 + L2 LINE L2 2782 3201 -112 183 100 0 0 chrX 12545272 12545302 -164428838 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 898 317 105 17 chrX 12545302 12545424 -164428716 + L2 LINE L2 3201 3311 -2 1045 219 60 8 chrX 12545439 12545704 -164428436 - L1MC5 LINE L1 -33 7928 7650 253 276 238 0 chrX 12545772 12545877 -164428263 - L2 LINE L2 -13 3300 3171 862 242 10 25 chrX 12546183 12546381 -164427759 - MER91A DNA MER1_type -1 195 1 1784 159 0 33 chrX 12547138 12547472 -164426668 + MER33 DNA MER1_type 2 324 0 1873 174 0 22 chrX 12548085 12548396 -164425744 + AluJb SINE Alu 1 304 -8 531 259 53 42 chrX 12548490 12548679 -164425461 - MIR SINE MIR -52 210 20 304 315 15 46 chrX 12548933 12549063 -164425077 + MIR SINE MIR 87 212 -50 374 289 42 48 chrX 12549349 12549660 -164424480 + L1M4 LINE L1 4410 4718 -1428 631 276 96 48 chrX 12549692 12549964 -164424176 + MLT1H LTR MaLR 23 307 -242 417 211 94 23 chrX 12550016 12550144 -164423996 + MLT1H LTR MaLR 410 546 -3 420 169 136 93 chrX 12551954 12552072 -164422068 + HsTC2 DNA Tc2 29 151 -1747 808 235 25 48 chrX 12552074 12552398 -164421742 + HsTC2 DNA Tc2 1235 1776 -122 296 290 131 28 chrX 12552972 12553117 -164421023 + MIR SINE MIR 92 251 -11 1235 132 107 43 chrX 12554146 12554427 -164419713 + MER33 DNA MER1_type 21 319 -5 211 294 96 64 chrX 12554490 12554681 -164419459 + MIR SINE MIR 23 219 -43 310 342 9 0 chrX 12554786 12554897 -164419243 - MIR SINE MIR -4 258 147 601 249 30 24 chrX 12554905 12555074 -164419066 + MIR SINE MIR 2 171 -91 349 309 18 18 chrX 12555284 12555394 -164418746 - MIR SINE MIR -78 130 21 539 239 63 13 chrX 12555468 12555627 -164418513 - MLT1H LTR MaLR -382 167 1 206 296 19 0 chrX 12555946 12556000 -164418140 + MIR SINE MIR 24 78 -130 521 217 75 19 chrX 12556005 12556164 -164417976 + MLT1H LTR MaLR 2 137 -272 278 108 0 154 chrX 12556387 12556452 -164417688 + MLT1H LTR MaLR 492 546 -3 327 290 37 9 chrX 12556454 12556561 -164417579 + MIR3 SINE MIR 77 186 -22 280 317 21 0 chrX 12557488 12557596 -164416544 + L1MC/D LINE L1 5669 5778 -343 769 265 51 43 chrX 12557608 12557865 -164416275 + MIR SINE MIR 4 262 0 1285 242 144 31 chrX 12557903 12558383 -164415757 - MLT1H1 LTR MaLR -11 544 11 269 260 31 0 chrX 12558458 12558554 -164415586 + (TA)n Simple_repeat Simple_repeat 2 100 0 342 293 245 20 chrX 12559878 12560025 -164414115 - MIR3 SINE MIR -11 197 18 1195 165 23 23 chrX 12560484 12560702 -164413438 + MER20 DNA MER1_type 2 219 0 219 283 17 0 chrX 12561307 12561367 -164412773 - L2 LINE L2 -233 3080 3020 724 135 0 9 chrX 12562804 12562915 -164411225 - MLT1C LTR MaLR -2 465 356 386 317 139 11 chrX 12562928 12563108 -164411032 + L2 LINE L2 2860 3062 -210 433 233 114 52 chrX 12563126 12563304 -164410836 - MLT1C LTR MaLR -115 352 158 2327 131 121 18 chrX 12563304 12563692 -164410448 - MSTA LTR MaLR 0 428 1 433 233 114 52 chrX 12563692 12563723 -164410417 - MLT1C LTR MaLR -309 158 130 2633 130 6 3 chrX 12565084 12565446 -164408694 - THE1B LTR MaLR 0 364 2 867 258 18 5 chrX 12565577 12565794 -164408346 - MIR SINE MIR -31 231 12 911 80 0 0 chrX 12567866 12567978 -164406162 + AluSg/x SINE Alu 188 299 -13 23 54 0 0 chrX 12568031 12568068 -164406072 + AT_rich Low_complexity Low_complexity 1 37 0 2409 107 24 24 chrX 12568453 12568828 -164405312 - THE1C LTR MaLR 0 375 1 1417 19 0 0 chrX 12569226 12569387 -164404753 - L1PA3 LINE L1 0 6155 5995 2229 118 3 0 chrX 12569462 12569759 -164404381 - AluSq SINE Alu -15 298 1 607 276 74 15 chrX 12569992 12570111 -164404029 + MER58C DNA MER1_type 1 138 -2282 2438 62 0 44 chrX 12570111 12570432 -164403708 + AluY SINE Alu 1 307 -4 607 276 74 15 chrX 12570432 12570515 -164403625 + MER58C DNA MER1_type 138 215 0 308 161 49 12 chrX 12571662 12571743 -164402397 + L1MA9 LINE L1 6229 6312 0 230 104 104 134 chrX 12572695 12572762 -164401378 + L1ME1 LINE L1 6097 6161 -5 2692 255 58 42 chrX 12572812 12573520 -164400620 + L1ME LINE L1 63 758 -5322 462 18 0 0 chrX 12573520 12573575 -164400565 + (CA)n Simple_repeat Simple_repeat 2 56 0 2692 255 58 42 chrX 12573575 12574259 -164399881 + L1ME LINE L1 758 1475 -4605 285 75 19 19 chrX 12574249 12574302 -164399838 + L1MA9 LINE L1 6259 6311 -1 * 968 232 101 108 chrX 12574446 12574991 -164399149 + L1ME LINE L1 1481 2028 -4233 1878 169 0 13 chrX 12574991 12575305 -164398835 + AluJb SINE Alu 1 310 -2 968 232 101 108 chrX 12575305 12575366 -164398774 + L1ME LINE L1 2028 2088 -4173 2398 99 0 0 chrX 12575366 12575669 -164398471 + AluSx SINE Alu 1 303 -9 968 232 101 108 chrX 12575669 12575824 -164398316 + L1ME LINE L1 2088 2238 -4023 273 196 0 5 chrX 12576431 12576502 -164397638 - L1MA4A LINE L1 0 6305 6238 684 124 80 0 chrX 12576717 12576830 -164397310 + FLAM_C SINE Alu 9 130 -13 2194 120 10 0 chrX 12578716 12579025 -164395115 - AluSx SINE Alu 0 312 1 29 70 0 0 chrX 12579221 12579278 -164394862 + AT_rich Low_complexity Low_complexity 1 57 0 534 163 0 0 chrX 12579995 12580093 -164394047 + C-rich Low_complexity Low_complexity 4 101 0 2041 166 0 0 chrX 12580093 12580401 -164393739 - AluSx SINE Alu -4 308 1 2177 116 0 7 chrX 12581537 12581838 -164392302 - AluSx SINE Alu -13 299 1 429 290 145 19 chrX 12582617 12582831 -164391309 + MIR SINE MIR 20 260 -2 2084 138 0 0 chrX 12583069 12583365 -164390775 - AluSx SINE Alu -16 296 1 2012 222 74 40 chrX 12583838 12584445 -164389695 - L1ME3A LINE L1 -6 6164 5537 318 327 33 7 chrX 12584447 12584600 -164389540 - L1ME LINE L1 -5218 1416 1260 4766 147 45 16 chrX 12585403 12585705 -164388435 - L1MB7 LINE L1 -8 6176 5884 2203 131 0 0 chrX 12585705 12586011 -164388129 - AluSx SINE Alu -2 310 5 4766 147 45 16 chrX 12586011 12586667 -164387473 - L1MB7 LINE L1 -300 5884 5189 1186 174 10 0 chrX 12586669 12586870 -164387270 - AluSg/x SINE Alu -2 310 108 2474 82 49 25 chrX 12586870 12587236 -164386904 + THE1C LTR MaLR 1 375 0 390 134 0 49 chrX 12587242 12587324 -164386816 - L1ME LINE L1 -5301 1241 1164 2484 66 3 10 chrX 12587324 12587627 -164386513 + AluY SINE Alu 1 301 -10 1119 147 0 0 chrX 12587627 12587784 -164386356 + AluSg/x SINE Alu 132 288 -22 5009 190 54 32 chrX 12587784 12588917 -164385223 - L1ME LINE L1 -5368 1174 17 1873 96 0 16 chrX 12590750 12590999 -164383141 + AluSq SINE Alu 41 285 -28 2295 110 3 7 chrX 12591966 12592274 -164381866 + AluSp SINE Alu 1 307 -6 372 294 135 12 chrX 12592876 12593039 -164381101 - MIR SINE MIR -72 190 8 26 0 0 0 chrX 12593512 12593538 -164380602 + AT_rich Low_complexity Low_complexity 1 26 0 1941 156 3 0 chrX 12594634 12594922 -164379218 + AluJb SINE Alu 1 289 -23 193 29 59 0 chrX 12594926 12594960 -164379180 + (CAA)n Simple_repeat Simple_repeat 2 37 0 2016 93 93 0 chrX 12598003 12598282 -164375858 - AluSp SINE Alu -8 305 1 21 0 0 0 chrX 12598655 12598676 -164375464 + AT_rich Low_complexity Low_complexity 1 21 0 287 261 123 14 chrX 12600509 12600647 -164373493 + Charlie7 DNA MER1_type 11 163 -2449 471 178 101 71 chrX 12601247 12601358 -164372782 - MER104 DNA MER2_type -1720 178 59 2388 82 3 0 chrX 12601358 12601651 -164372489 + AluSx SINE Alu 1 294 -18 471 178 101 71 chrX 12601651 12601708 -164372432 - MER104 DNA MER2_type -1839 59 5 1519 125 0 0 chrX 12601740 12601956 -164372184 - AluSg/x SINE Alu 0 312 97 236 247 0 26 chrX 12602059 12602136 -164372004 + L2 LINE L2 3159 3233 -80 318 227 0 34 chrX 12602610 12602698 -164371442 + HsTC2 DNA Tc2 2 86 -1812 253 286 11 111 chrX 12602977 12603239 -164370901 - L2 LINE L2 -44 3228 2993 904 195 32 36 chrX 12603481 12603702 -164370438 - MLT1F1 LTR MaLR -10 557 338 517 250 66 7 chrX 12604019 12604171 -164369969 - MLT1F1 LTR MaLR -381 161 1 624 306 123 28 chrX 12604171 12604265 -164369875 + L1ME4a LINE L1 5380 5464 -657 2061 121 0 3 chrX 12604265 12604571 -164369569 + L1PA16 LINE L1 5858 6162 -4 624 306 123 28 chrX 12604571 12604946 -164369194 + L1ME4a LINE L1 5464 5894 -227 777 125 8 8 chrX 12605418 12605546 -164368594 + FLAM_A SINE Alu 1 128 -5 1756 64 8 28 chrX 12606275 12606525 -164367615 - HUERS-P1 LTR ERV1 -2627 3636 3392 487 68 11 102 chrX 12606515 12606526 -164367614 - HUERS-P1 LTR ERV1 -3142 3121 3111 * 1776 110 0 8 chrX 12606526 12606762 -164367378 - AluSx SINE Alu -73 239 6 487 68 11 102 chrX 12606762 12606838 -164367302 - HUERS-P1 LTR ERV1 -3152 3111 3042 2317 109 0 0 chrX 12606838 12607142 -164366998 - AluSx SINE Alu -8 304 1 2256 142 59 30 chrX 12610457 12610972 -164363168 + MLT2A2 LTR ERVL 3 554 0 200 273 0 13 chrX 12611516 12611593 -164362547 - MER5B DNA MER1_type -98 80 5 4286 114 23 36 chrX 12612268 12612494 -164361646 + L1PB3 LINE L1 5463 5690 -464 219 69 0 0 chrX 12612494 12612523 -164361617 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1758 107 0 41 chrX 12612529 12612772 -164361368 - AluSq SINE Alu -30 283 51 4286 114 23 36 chrX 12612772 12613114 -164361026 + L1PB3 LINE L1 5695 6030 -124 2095 115 0 0 chrX 12613114 12613384 -164360756 + AluSx SINE Alu 9 278 -34 4286 114 23 36 chrX 12613384 12613507 -164360633 + L1PB3 LINE L1 6030 6153 -1 405 0 0 0 chrX 12613955 12614000 -164360140 + (TA)n Simple_repeat Simple_repeat 1 45 0 2315 87 0 0 chrX 12614002 12614291 -164359849 - AluSg1 SINE Alu -20 289 1 536 208 10 105 chrX 12614790 12614868 -164359272 - LTR41 LTR ERVL 0 795 711 2158 133 0 0 chrX 12614868 12615169 -164358971 + AluJb SINE Alu 1 301 -11 536 208 10 105 chrX 12615169 12615367 -164358773 - LTR41 LTR ERVL -84 711 443 898 169 11 42 chrX 12615470 12615659 -164358481 - LTR41 LTR ERVL -590 183 1 1972 119 20 3 chrX 12616154 12616457 -164357683 + L1PA16 LINE L1 5716 6023 -143 221 206 0 15 chrX 12616912 12616980 -164357160 + (TA)n Simple_repeat Simple_repeat 2 68 0 203 59 0 29 chrX 12618041 12618075 -164356065 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 1850 155 0 0 chrX 12618077 12618373 -164355767 - AluJb SINE Alu -6 306 11 2200 104 10 0 chrX 12619117 12619426 -164354714 - AluSx SINE Alu 0 312 1 1893 143 16 0 chrX 12619874 12620056 -164354084 - AluJb SINE Alu 0 312 121 252 0 0 0 chrX 12620056 12620084 -164354056 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1893 143 16 0 chrX 12620084 12620208 -164353932 - AluJb SINE Alu -191 121 1 315 333 17 17 chrX 12620376 12620496 -164353644 - MIR SINE MIR -57 151 32 180 111 0 0 chrX 12621061 12621088 -164353052 + (CATA)n Simple_repeat Simple_repeat 3 29 0 548 274 13 0 chrX 12621840 12621997 -164352143 + L1ME4a LINE L1 4210 4368 -1778 1539 196 79 25 chrX 12622249 12622565 -164351575 - MER58B DNA MER1_type -8 333 1 1099 166 38 19 chrX 12622670 12622881 -164351259 + L1MB4 LINE L1 5948 6162 -18 387 271 32 7 chrX 12622881 12623036 -164351104 + L1ME4a LINE L1 5703 5861 -260 2191 101 44 0 chrX 12623167 12623465 -164350675 - AluSx SINE Alu -1 311 1 1245 228 87 21 chrX 12623472 12623745 -164350395 - L1ME3A LINE L1 -5 6165 5859 739 187 8 0 chrX 12623745 12623868 -164350272 - FLAM_A SINE Alu -9 124 1 1245 228 87 21 chrX 12623868 12623972 -164350168 - L1ME3A LINE L1 -311 5859 5763 1906 161 0 22 chrX 12624061 12624377 -164349763 - AluJo SINE Alu -3 309 1 186 229 0 0 chrX 12624825 12624860 -164349280 - L3 LINE CR1 -13 1564 1530 * 260 281 178 15 chrX 12624831 12624966 -164349174 - MIR3 SINE MIR -23 185 29 2147 190 78 60 chrX 12625508 12625608 -164348532 - L1ME2 LINE L1 0 6164 6067 2417 82 0 13 chrX 12625608 12625914 -164348226 + AluSx SINE Alu 1 302 -10 2147 190 78 60 chrX 12625914 12626209 -164347931 - L1ME2 LINE L1 -97 6067 5752 2304 104 0 0 chrX 12626209 12626506 -164347634 - AluSx SINE Alu -15 297 1 2147 190 78 60 chrX 12626506 12626724 -164347416 - L1ME2 LINE L1 -412 5752 5539 183 244 183 12 chrX 12626838 12626920 -164347220 + MIR SINE MIR 68 163 -99 22 80 0 0 chrX 12626994 12627044 -164347096 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chrX 12627133 12627155 -164346985 + AT_rich Low_complexity Low_complexity 1 22 0 4908 209 23 42 chrX 12627972 12629199 -164344941 - L1MC4a LINE L1 0 7808 6605 24 0 0 0 chrX 12629419 12629443 -164344697 + AT_rich Low_complexity Low_complexity 1 24 0 2078 117 3 0 chrX 12629518 12629801 -164344339 - AluY SINE Alu -27 284 1 2434 80 0 0 chrX 12629971 12630270 -164343870 - AluSq SINE Alu -14 299 1 386 266 56 79 chrX 12631511 12631815 -164342325 + L2 LINE L2 2812 3108 -164 609 254 52 17 chrX 12631927 12632100 -164342040 - MIR SINE MIR -79 183 5 852 200 61 11 chrX 12632103 12632283 -164341857 - MER5A DNA MER1_type 0 189 1 300 285 19 82 chrX 12632318 12632381 -164341759 + L2 LINE L2 3125 3190 -82 1698 149 3 122 chrX 12632381 12632724 -164341416 - AluSq SINE Alu 0 303 2 300 285 19 82 chrX 12632724 12632818 -164341322 + L2 LINE L2 3190 3272 0 713 157 58 0 chrX 12634590 12634711 -164339429 - L1MD1 LINE L1 0 6242 6115 2950 195 31 29 chrX 12634712 12635265 -164338875 - L1MD2 LINE L1 -200 6159 5603 439 110 0 90 chrX 12635265 12635301 -164338839 - L1MA10 LINE L1 0 6334 6296 1502 179 85 48 chrX 12635301 12635653 -164338487 - MLT1A1 LTR MaLR 0 365 1 439 110 0 90 chrX 12635653 12635716 -164338424 - L1MA10 LINE L1 -38 6296 6244 2950 195 31 29 chrX 12635716 12635813 -164338327 - L1MD2 LINE L1 -756 5603 5508 933 189 34 13 chrX 12635814 12636052 -164338088 - L1MDa LINE L1 -4451 2089 1847 2185 102 3 3 chrX 12636215 12636509 -164337631 + AluSq SINE Alu 2 295 -18 2509 82 0 6 chrX 12636580 12636895 -164337245 - AluSp SINE Alu 0 313 1 4208 174 21 41 chrX 12636933 12637476 -164336664 - L1MD2 LINE L1 -2 6357 5837 2396 113 0 0 chrX 12637476 12637786 -164336354 - AluSx SINE Alu -2 310 1 4208 174 21 41 chrX 12637786 12638112 -164336028 - L1MD2 LINE L1 -522 5837 5506 479 253 109 23 chrX 12638112 12638333 -164335807 - L1MDa LINE L1 -4452 2088 1849 727 179 62 0 chrX 12638369 12638514 -164335626 - L1MD1 LINE L1 -5 6237 6084 623 284 27 61 chrX 12638528 12638789 -164335351 - L1MD2 LINE L1 -214 6539 6288 8071 29 0 2 chrX 12638791 12640079 -164334061 - L1PA3 LINE L1 0 6155 4867 1332 57 0 0 chrX 12640098 12640255 -164333885 - THE1A LTR MaLR -198 157 1 3265 188 71 33 chrX 12640540 12640555 -164333585 - L1MD2 LINE L1 -1 6358 6345 2282 104 3 0 chrX 12640555 12640854 -164333286 - AluSx SINE Alu -12 300 1 3265 188 71 33 chrX 12640854 12641658 -164332482 - L1MD2 LINE L1 -14 6345 5508 2232 106 10 10 chrX 12641677 12641989 -164332151 - AluSx SINE Alu 0 312 1 270 156 52 13 chrX 12641999 12642076 -164332064 - L1MDa LINE L1 -4463 2077 1998 276 30 0 0 chrX 12642076 12642109 -164332031 + (TCCC)n Simple_repeat Simple_repeat 3 35 0 466 251 36 41 chrX 12642113 12642138 -164332002 - L1MDa LINE L1 -4506 2034 2010 1558 167 22 7 chrX 12642138 12642408 -164331732 - AluJo SINE Alu -38 274 1 466 251 36 41 chrX 12642408 12642577 -164331563 - L1MDa LINE L1 -4530 2010 1841 2413 206 69 53 chrX 12642793 12642999 -164331141 - L1MD2 LINE L1 0 6359 6158 315 0 0 0 chrX 12642999 12643034 -164331106 + (TG)n Simple_repeat Simple_repeat 2 36 0 2413 206 69 53 chrX 12643034 12643522 -164330618 - L1MD2 LINE L1 -201 6158 5654 1634 188 23 46 chrX 12643520 12644117 -164330023 - L1MD2 LINE L1 -526 6227 1842 * 1139 254 38 0 chrX 12644328 12644643 -164329497 - L1MD2 LINE L1 0 6753 6427 306 0 0 0 chrX 12644643 12644677 -164329463 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 1974 114 0 35 chrX 12644679 12644968 -164329172 - AluSx SINE Alu -29 283 5 227 53 0 26 chrX 12644977 12645015 -164329125 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 942 121 0 0 chrX 12645017 12645149 -164328991 - AluSq/x SINE Alu -181 132 1 1961 195 5 5 chrX 12645177 12645546 -164328594 - L1MD2 LINE L1 -483 6270 5902 882 222 17 4 chrX 12645547 12645786 -164328354 - L1MD2 LINE L1 -4451 2089 1848 1177 206 30 33 chrX 12646007 12646308 -164327832 - L1MD2 LINE L1 -1 6358 6059 * 1890 164 6 15 chrX 12646296 12646625 -164327515 - L1MD2 LINE L1 -528 5831 5506 1016 213 8 4 chrX 12646622 12646866 -164327274 - L1MDa LINE L1 -4449 2091 1847 * 4047 187 60 42 chrX 12647055 12647206 -164326934 - L1MD2 LINE L1 -57 6302 6155 273 29 0 0 chrX 12647206 12647240 -164326900 + (TG)n Simple_repeat Simple_repeat 1 34 0 243 0 0 0 chrX 12647239 12647266 -164326874 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 4047 187 60 42 chrX 12647240 12647943 -164326197 - L1MD2 LINE L1 -204 6155 5450 1877 78 0 16 chrX 12647943 12648187 -164325953 - AluSc SINE Alu -16 293 54 4047 187 60 42 chrX 12648187 12648371 -164325769 - L1MD2 LINE L1 -909 5450 5271 17255 131 28 36 chrX 12648371 12648498 -164325642 - L1 LINE L1 -2241 5324 5197 1565 172 22 11 chrX 12648498 12648766 -164325374 - AluJo SINE Alu -26 286 16 17255 131 28 36 chrX 12648766 12648789 -164325351 - L1 LINE L1 -2368 5197 5175 2287 100 0 3 chrX 12648789 12649088 -164325052 - AluSg SINE Alu -12 298 1 17255 131 28 36 chrX 12649088 12649614 -164324526 - L1 LINE L1 -2390 5175 4646 400 21 0 0 chrX 12649614 12649662 -164324478 - L1PA6 LINE L1 0 6154 6107 17255 131 28 36 chrX 12649662 12651024 -164323116 - L1 LINE L1 -2919 4646 3274 1935 148 0 20 chrX 12651024 12651328 -164322812 - AluJb SINE Alu -14 298 1 17255 131 28 36 chrX 12651328 12651529 -164322611 - L1 LINE L1 -4291 3274 3073 2198 113 0 0 chrX 12651529 12651831 -164322309 - AluSq SINE Alu -11 302 1 17255 131 28 36 chrX 12651831 12652429 -164321711 - L1 LINE L1 -4492 3073 2472 1932 143 0 7 chrX 12652429 12652760 -164321380 - AluSx SINE Alu 0 329 1 17255 131 28 36 chrX 12652760 12653515 -164320625 - L1 LINE L1 -5093 2472 1773 2361 90 0 0 chrX 12653515 12653805 -164320335 - AluSx SINE Alu -20 292 3 17255 131 28 36 chrX 12653805 12654475 -164319665 - L1 LINE L1 -5792 1773 1099 602 124 86 9 chrX 12654472 12654577 -164319563 - L1 LINE L1 -7432 133 21 * 2512 211 24 44 chrX 12654592 12654937 -164319203 - L1MDa LINE L1 -3219 3321 2971 2254 119 0 6 chrX 12654937 12655249 -164318891 - AluSx SINE Alu -2 310 1 2512 211 24 44 chrX 12655249 12655545 -164318595 - L1MDa LINE L1 -3569 2971 2695 1753 172 197 11 chrX 12655545 12655906 -164318234 - MSTA LTR MaLR 0 428 1 2512 211 24 44 chrX 12655906 12656011 -164318129 - L1MDa LINE L1 -3845 2695 2589 1570 209 119 5 chrX 12656030 12656475 -164317665 - L1MDa LINE L1 -3928 2612 2117 1232 164 0 0 chrX 12656512 12656707 -164317433 - L1MC/D LINE L1 -537 5822 5628 23 0 0 0 chrX 12656766 12656789 -164317351 + AT_rich Low_complexity Low_complexity 1 23 0 1063 171 40 44 chrX 12656838 12656962 -164317178 - L1MDa LINE L1 -4437 2103 1980 1778 148 41 0 chrX 12656962 12657233 -164316907 + AluSq SINE Alu 31 312 -1 1063 171 40 44 chrX 12657233 12657360 -164316780 - L1MDa LINE L1 -4560 1980 1853 461 252 8 8 chrX 12657625 12657744 -164316396 - MIR SINE MIR -4 258 140 2106 146 0 0 chrX 12657818 12658112 -164316028 - AluSx SINE Alu -18 294 1 258 175 0 0 chrX 12658282 12658322 -164315818 - MER58A DNA MER1_type 0 224 185 375 322 63 0 chrX 12658325 12658468 -164315672 - MER58A DNA MER1_type 0 154 3 1754 142 64 17 chrX 12658543 12658838 -164315302 + AluJo SINE Alu 1 309 -3 377 257 115 0 chrX 12658854 12658967 -164315173 + L1ME4a LINE L1 5512 5637 -484 775 286 68 0 chrX 12659116 12659350 -164314790 + MIR SINE MIR 2 251 -11 283 151 226 19 chrX 12659411 12659517 -164314623 + L1ME4a LINE L1 5853 5980 -141 512 241 78 78 chrX 12659535 12659780 -164314360 + MIR SINE MIR 15 259 -3 192 77 0 0 chrX 12660728 12660754 -164313386 + (A)n Simple_repeat Simple_repeat 1 26 0 512 339 122 4 chrX 12660913 12661158 -164312982 - L2 LINE L2 -55 3217 2944 1877 160 0 7 chrX 12661316 12661610 -164312530 - AluJo SINE Alu -20 292 1 189 0 0 0 chrX 12661617 12661638 -164312502 + (T)n Simple_repeat Simple_repeat 1 21 0 242 254 30 0 chrX 12663025 12663092 -164311048 + MER5A DNA MER1_type 9 77 -112 184 296 0 0 chrX 12663138 12663182 -164310958 + MER5A DNA MER1_type 145 188 -1 606 234 10 88 chrX 12663191 12663383 -164310757 - MER5B DNA MER1_type 0 178 2 352 136 12 49 chrX 12664019 12664100 -164310040 + L1MC5 LINE L1 7833 7910 -51 192 156 44 22 chrX 12664300 12664345 -164309795 + L2 LINE L2 3223 3268 -4 2296 90 3 7 chrX 12665301 12665591 -164308549 - AluSx SINE Alu -18 294 6 38 61 0 0 chrX 12665856 12665922 -164308218 + AT_rich Low_complexity Low_complexity 1 66 0 1720 194 0 7 chrX 12666363 12666662 -164307478 + AluJb SINE Alu 1 297 -15 509 231 103 62 chrX 12667677 12667919 -164306221 + MER112 DNA MER1_type 8 259 -1 237 83 0 0 chrX 12668825 12668861 -164305279 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 787 179 0 93 chrX 12668861 12669023 -164305117 - FRAM SINE Alu -19 147 1 324 241 241 25 chrX 12669024 12669182 -164304958 - L1ME3A LINE L1 -224 5946 5755 604 331 108 10 chrX 12669423 12669728 -164304412 - L3 LINE CR1 -3 1574 1240 1956 129 13 19 chrX 12670141 12670452 -164303688 + AluJb SINE Alu 1 309 -3 211 296 0 0 chrX 12670453 12670507 -164303633 - L3 LINE CR1 -646 931 878 27 0 0 0 chrX 12670572 12670599 -164303541 + AT_rich Low_complexity Low_complexity 1 27 0 2058 155 10 3 chrX 12670698 12671008 -164303132 - AluJb SINE Alu 0 312 1 1605 148 0 16 chrX 12671102 12671358 -164302782 - AluJb SINE Alu -16 296 45 246 239 0 15 chrX 12671540 12671607 -164302533 + MER103 DNA DNA 57 122 -44 495 343 22 27 chrX 12671717 12672089 -164302051 - L3 LINE CR1 -788 789 345 2198 113 0 7 chrX 12673684 12673985 -164300155 + AluSx SINE Alu 3 301 -11 435 136 0 0 chrX 12674156 12674237 -164299903 + L1MA7 LINE L1 6211 6291 0 592 239 0 75 chrX 12674450 12674676 -164299464 + MER3 DNA MER1_type 1 209 0 338 145 0 16 chrX 12674770 12674832 -164299308 - FLAM_A SINE Alu -10 123 63 34 24 0 0 chrX 12676037 12676078 -164298062 + AT_rich Low_complexity Low_complexity 1 41 0 1926 158 0 3 chrX 12676080 12676377 -164297763 - AluJo SINE Alu -16 296 1 242 125 25 0 chrX 12676539 12676579 -164297561 - MER45 DNA AcHobo 0 1581 1541 843 199 65 5 chrX 12676618 12676834 -164297306 - L1MD3 LINE L1 -8 7987 7759 1873 209 45 24 chrX 12776834 12777299 -164196841 - MLT1F LTR MaLR -67 475 1 988 269 154 18 chrX 12778789 12779346 -164194794 + L1MC4a LINE L1 5299 5931 -1877 431 229 46 69 chrX 12779982 12780200 -164193940 + L1M4 LINE L1 3998 4210 -1936 825 186 14 7 chrX 12780212 12780352 -164193788 + FRAM SINE Alu 4 144 -32 2403 81 0 28 chrX 12780453 12780773 -164193367 - AluY SINE Alu 0 311 1 797 174 20 45 chrX 12781110 12781311 -164192829 - L1MEc LINE L1 -6165 231 36 1485 132 54 29 chrX 12781461 12781703 -164192437 + AluJo SINE Alu 51 298 -14 189 107 0 0 chrX 12781900 12781928 -164192212 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 1319 170 30 43 chrX 12781928 12782029 -164192111 + L1MB2 LINE L1 5874 5975 -196 1863 116 112 7 chrX 12782029 12782305 -164191835 + AluSx SINE Alu 1 305 -7 1319 170 30 43 chrX 12782305 12782503 -164191637 + L1MB2 LINE L1 5975 6169 -2 949 155 80 9 chrX 12782533 12782746 -164191394 - MER33 DNA MER1_type -96 228 1 529 228 81 75 chrX 12782910 12783243 -164190897 - L1ME2 LINE L1 -48 6116 5782 1722 179 0 0 chrX 12783246 12783514 -164190626 + AluJb SINE Alu 1 268 -44 243 61 0 0 chrX 12784622 12784655 -164189485 + (TG)n Simple_repeat Simple_repeat 1 33 0 939 190 3 58 chrX 12784784 12785079 -164189061 - L1MCa LINE L1 -2906 3223 2945 * 1807 216 6 9 chrX 12785076 12785521 -164188619 - L1MCa LINE L1 -3624 2505 2061 388 219 84 51 chrX 12785567 12785804 -164188336 - L1MCa LINE L1 -4217 1914 1670 229 177 38 38 chrX 12785807 12785886 -164188254 - L1MCa LINE L1 -4559 1572 1494 207 0 0 0 chrX 12787413 12787436 -164186704 + (CA)n Simple_repeat Simple_repeat 2 24 0 1348 274 104 20 chrX 12787683 12788685 -164185455 - L1MEc LINE L1 -2167 3962 2877 555 273 102 35 chrX 12788685 12789144 -164184996 - L1MEc LINE L1 -4525 1609 1171 419 282 52 65 chrX 12789158 12789360 -164184780 - L1MEc LINE L1 -5072 1047 847 2800 7 0 3 chrX 12789360 12789670 -164184470 - AluYa5 SINE Alu -2 309 1 419 282 52 65 chrX 12789670 12789715 -164184425 - L1MEc LINE L1 -5272 847 803 381 323 66 15 chrX 12789729 12789927 -164184213 - L1MEc LINE L1 -5369 750 543 392 253 212 0 chrX 12790092 12790238 -164183902 + HAL1 LINE L1 151 327 -2180 3005 230 81 98 chrX 12790625 12792369 -164181771 + HAL1 LINE L1 489 2203 -304 306 0 0 0 chrX 12792847 12792881 -164181259 + (TA)n Simple_repeat Simple_repeat 1 34 0 181 279 0 59 chrX 12793002 12793070 -164181070 + L2 LINE L2 3225 3288 -25 22 0 0 0 chrX 12793090 12793112 -164181028 + AT_rich Low_complexity Low_complexity 1 22 0 323 280 18 73 chrX 12794505 12794658 -164179482 - MIR3 SINE MIR -17 191 44 3844 181 32 21 chrX 12794937 12795504 -164178636 + L1MB7 LINE L1 4766 5325 -859 2266 116 48 22 chrX 12795504 12795859 -164178281 + THE1B LTR MaLR 1 364 0 3844 181 32 21 chrX 12795859 12796646 -164177494 + L1MB7 LINE L1 5325 6144 -40 204 267 0 0 chrX 12797234 12797279 -164176861 + L2 LINE L2 3263 3307 -6 384 142 66 85 chrX 12797467 12797536 -164176604 + L1MC5 LINE L1 7130 7198 -763 691 218 213 6 chrX 12797536 12797710 -164176430 - MER63A DNA MER1_type 0 210 1 384 142 66 85 chrX 12797710 12797746 -164176394 + L1MC5 LINE L1 7198 7233 -728 1142 209 89 38 chrX 12797790 12798382 -164175758 + L1MC5 LINE L1 7261 7791 -170 4329 168 47 13 chrX 12798520 12800281 -164173859 + L1MB7 LINE L1 4395 6209 0 2506 69 0 7 chrX 12800762 12801068 -164173072 + AluY SINE Alu 1 304 -7 373 209 101 0 chrX 12801422 12801551 -164172589 - L1MC4a LINE L1 -1905 5903 5762 277 239 94 36 chrX 12801728 12801866 -164172274 + MLT1J LTR MaLR 39 184 -327 337 270 103 28 chrX 12803336 12803658 -164170482 + L1ME LINE L1 5335 5691 -430 287 320 104 31 chrX 12804663 12804885 -164169255 - LTR16C LTR ERVL -100 391 154 1268 132 44 13 chrX 12804940 12805167 -164168973 + MER46A DNA MER2_type 1 234 -2 435 322 78 0 chrX 12805177 12805344 -164168796 - MIR SINE MIR -57 205 27 253 259 9 56 chrX 12806037 12806145 -164167995 - L1M4c LINE L1 -4253 2393 2291 5323 193 69 68 chrX 12806174 12808061 -164166079 - L1M4c LINE L1 -4480 2166 271 314 222 0 14 chrX 12808116 12808188 -164165952 - L1M4c LINE L1 -6282 260 190 2013 206 121 43 chrX 12808378 12808959 -164165181 - MLT1E2 LTR MaLR 0 626 1 2483 218 33 126 chrX 12808959 12810092 -164164048 - MLT1E2-int LTR MaLR 0 1371 345 259 208 0 19 chrX 12810093 12810146 -164163994 + MIR SINE MIR 93 144 -64 682 251 58 1 chrX 12810442 12810658 -164163482 - MIR SINE MIR -5 257 3 285 271 0 0 chrX 12811300 12811370 -164162770 + Charlie8 DNA MER1_type 3 72 -2345 1295 243 77 23 chrX 12811441 12811972 -164162168 - L1M4 LINE L1 -889 5257 4698 278 228 220 11 chrX 12812097 12812221 -164161919 + Charlie8 DNA MER1_type 136 265 -2152 1235 130 27 63 chrX 12812455 12812678 -164161462 - MER20 DNA MER1_type -4 215 1 27 0 0 0 chrX 12812957 12812984 -164161156 + AT_rich Low_complexity Low_complexity 1 27 0 1069 167 31 13 chrX 12813504 12813731 -164160409 + MER97a DNA MER1_type? 24 254 -640 203 146 24 0 chrX 12813731 12813772 -164160368 + (TA)n Simple_repeat Simple_repeat 1 42 0 322 304 136 35 chrX 12814614 12814667 -164159473 + L2 LINE L2 2809 2855 -417 2683 119 46 7 chrX 12814667 12815079 -164159061 + MSTC LTR MaLR 1 428 0 322 304 136 35 chrX 12815079 12815282 -164158858 + L2 LINE L2 2855 3091 -181 505 234 113 0 chrX 12815317 12815441 -164158699 + MLT1J2 LTR MaLR 20 157 -293 391 291 113 0 chrX 12815683 12815824 -164158316 + L2 LINE L2 3097 3253 -19 325 281 70 47 chrX 12815912 12816005 -164158135 + MIR3 SINE MIR 57 155 -53 975 193 16 11 chrX 12816005 12816192 -164157948 - MER5A DNA MER1_type 0 189 2 325 281 70 47 chrX 12816192 12816226 -164157914 + MIR3 SINE MIR 155 187 -21 252 339 76 53 chrX 12819188 12819359 -164154781 + MIR3 SINE MIR 21 195 -13 2292 98 3 0 chrX 12820421 12820716 -164153424 + AluSx SINE Alu 1 296 -16 1969 296 62 26 chrX 12823531 12823889 -164150251 - L2 LINE L2 -189 3124 2780 2635 58 0 0 chrX 12823889 12824199 -164149941 - AluY SINE Alu -1 310 1 1969 296 62 26 chrX 12824199 12824774 -164149366 - L2 LINE L2 -533 2780 2159 526 291 51 15 chrX 12824775 12824971 -164149169 + HAL1 LINE L1 4 206 -2301 2919 187 13 19 chrX 12824974 12825499 -164148641 - ERVL LTR ERVL -3551 2213 1692 1862 249 122 30 chrX 12825499 12826171 -164147969 + HAL1 LINE L1 202 935 -1572 337 23 45 0 chrX 12826197 12826241 -164147899 + L1PA7 LINE L1 6107 6152 -2 378 221 176 100 chrX 12826242 12826703 -164147437 + HAL1 LINE L1 1000 1495 -1012 22 35 0 0 chrX 12826710 12826739 -164147401 + AT_rich Low_complexity Low_complexity 1 29 0 3552 205 83 15 chrX 12826768 12828221 -164145919 - L1MD2 LINE L1 -249 6110 4540 2519 209 84 24 chrX 12828192 12828861 -164145279 + L1ME2 LINE L1 5323 6031 -133 * 650 193 9 0 chrX 12828961 12829070 -164145070 - AluJb SINE Alu -202 110 1 791 242 36 59 chrX 12831613 12831832 -164142308 - MIR SINE MIR -14 248 35 397 267 17 0 chrX 12832686 12832802 -164141338 - MER103 DNA DNA -45 121 4 4107 104 2 21 chrX 12832825 12833105 -164141035 + L1P LINE L1 4294 4578 -1568 2372 81 0 3 chrX 12833105 12833403 -164140737 - AluY SINE Alu -14 297 1 4107 104 2 21 chrX 12833403 12833737 -164140403 + L1P LINE L1 4578 4896 -1250 867 198 23 0 chrX 12834595 12834767 -164139373 - AluJb SINE Alu 0 312 137 2370 73 10 3 chrX 12834859 12835160 -164138980 - AluSq SINE Alu -9 304 2 1082 245 101 40 chrX 12835730 12835911 -164138229 - L2 LINE L2 -2773 541 373 762 157 70 41 chrX 12835911 12836083 -164138057 - MER5B DNA MER1_type -1 177 1 1082 245 101 40 chrX 12836083 12836326 -164137814 - L2 LINE L2 -2941 373 91 1262 154 0 96 chrX 12836946 12837130 -164137010 - MER46A DNA MER2_type -2496 235 35 1926 87 0 30 chrX 12837130 12837420 -164136720 + AluSq SINE Alu 38 313 0 2254 99 0 0 chrX 12837422 12837706 -164136434 + AluSx SINE Alu 1 284 -28 1262 154 0 96 chrX 12837706 12837778 -164136362 - MER46A DNA MER2_type -2697 34 1 255 304 95 47 chrX 12838368 12838516 -164135624 + MIR3 SINE MIR 49 203 -5 430 208 40 48 chrX 12838581 12838665 -164135475 + L1MDb LINE L1 21 105 -6304 1838 154 32 0 chrX 12838665 12838950 -164135190 - AluJo SINE Alu -18 294 1 430 208 40 48 chrX 12838950 12838990 -164135150 + L1MDb LINE L1 105 144 -6265 1965 208 58 2 chrX 12839012 12839497 -164134643 + L1M4 LINE L1 2576 3087 -3059 2180 77 3 18 chrX 12839497 12839835 -164134305 + AluY SINE Alu 1 334 0 263 241 56 63 chrX 12839910 12840133 -164134007 + L1MC4a LINE L1 7708 7807 -1 747 251 208 18 chrX 12840166 12840561 -164133579 - L2 LINE L2 -1203 2111 1642 2291 186 19 40 chrX 12840575 12841047 -164133093 + MLT1C LTR MaLR 6 467 0 181 301 19 39 chrX 12841049 12841152 -164132988 - L2 LINE L2 -1692 1622 1522 472 117 0 75 chrX 12841458 12841552 -164132588 + L1MA5A LINE L1 6211 6297 0 284 321 15 23 chrX 12842346 12842477 -164131663 - MER94 DNA DNA -1 133 4 1936 161 0 10 chrX 12842662 12842973 -164131167 + AluJo SINE Alu 1 308 -4 5048 142 35 21 chrX 12842974 12843948 -164130192 + L1MB7 LINE L1 5195 6184 0 2408 66 23 0 chrX 12845649 12845953 -164128187 + AluY SINE Alu 1 311 0 23 33 0 0 chrX 12847596 12847626 -164126514 + AT_rich Low_complexity Low_complexity 1 30 0 2300 111 0 0 chrX 12847733 12848040 -164126100 + AluSq SINE Alu 1 307 -6 188 312 138 45 chrX 12849116 12849449 -164124691 + L2 LINE L2 1829 2192 -1122 723 255 120 5 chrX 12849616 12849832 -164124308 - MIR SINE MIR -21 241 1 471 283 97 36 chrX 12849856 12850103 -164124037 - L2 LINE L2 -2 3270 3009 276 324 97 14 chrX 12850186 12850331 -164123809 - L2 LINE L2 -866 2448 2292 25 31 0 0 chrX 12851685 12851717 -164122423 + AT_rich Low_complexity Low_complexity 1 32 0 216 295 0 64 chrX 12851918 12851996 -164122144 - L2 LINE L2 0 3313 3241 1706 224 59 25 chrX 12852012 12852454 -164121686 + LTR16A1 LTR ERVL 1 457 0 1554 187 107 0 chrX 12852533 12852832 -164121308 + MLT1F1 LTR MaLR 188 518 -49 309 228 76 13 chrX 12853082 12853161 -164120979 + LTR33A LTR ERVL 440 523 0 326 398 60 5 chrX 12853164 12853380 -164120760 - L2 LINE L2 -521 2793 2566 1102 204 42 5 chrX 12853685 12853901 -164120239 - MER58A DNA MER1_type 0 224 1 460 250 59 0 chrX 12853923 12854059 -164120081 - MER103 DNA DNA -11 155 12 219 378 46 27 chrX 12854583 12854845 -164119295 + L2 LINE L2 2566 2832 -482 466 277 53 48 chrX 12854969 12855157 -164118983 + MER5A DNA MER1_type 1 189 0 195 283 0 0 chrX 12855158 12855204 -164118936 - MIR3 SINE MIR -51 157 112 2107 100 37 23 chrX 12855419 12855718 -164118422 + AluSx SINE Alu 1 303 -9 217 294 92 37 chrX 12856203 12856312 -164117828 + L2 LINE L2 3152 3266 -6 490 275 100 34 chrX 12856376 12856602 -164117538 + MIR SINE MIR 9 247 -15 2800 192 77 24 chrX 12857882 12858518 -164115622 + L1ME3A LINE L1 5495 6164 -6 1752 109 4 0 chrX 12858524 12858753 -164115387 + AluSx SINE Alu 1 230 -82 880 59 0 0 chrX 12858755 12858856 -164115284 + AluSg/x SINE Alu 194 294 -18 313 259 245 0 chrX 12859143 12859282 -164114858 - MER63A DNA MER1_type -37 173 1 373 226 0 0 chrX 12859773 12859835 -164114305 - MER58A DNA MER1_type -162 62 1 985 180 79 60 chrX 12860028 12860287 -164113853 - MIR SINE MIR -1 261 2 2421 98 0 0 chrX 12860402 12860708 -164113432 + AluSg SINE Alu 1 306 -4 861 277 4 31 chrX 12861316 12861572 -164112568 + MIR SINE MIR 1 249 -13 6268 20 0 16 chrX 12862297 12862318 -164111822 + L1PA4 LINE L1 5470 5490 -665 2911 7 0 0 chrX 12862318 12862628 -164111512 + AluYa5 SINE Alu 1 310 -1 6268 20 0 16 chrX 12862628 12863302 -164110838 + L1PA4 LINE L1 5490 6154 -1 1929 133 14 10 chrX 12864071 12864364 -164109776 + AluJb SINE Alu 6 299 -13 538 281 69 59 chrX 12864418 12864599 -164109541 + HAL1 LINE L1 1237 1415 -1092 8190 62 2 0 chrX 12864599 12865566 -164108574 + LTR5 LTR ERVK 1 969 0 538 281 69 59 chrX 12865566 12865775 -164108365 + HAL1 LINE L1 1415 1631 -876 569 244 45 0 chrX 12867286 12867462 -164106678 - L1M4 LINE L1 -2890 3256 3073 266 269 198 47 chrX 12872842 12872997 -164101143 + MIR3 SINE MIR 7 171 -61 223 310 0 14 chrX 12874249 12874320 -164099820 + MER5B DNA MER1_type 3 72 -106 270 304 11 0 chrX 12874359 12874451 -164099689 + CT-rich Low_complexity Low_complexity 4 96 0 30 0 0 0 chrX 12875369 12875399 -164098741 + AT_rich Low_complexity Low_complexity 1 30 0 399 258 11 0 chrX 12875795 12875884 -164098256 + MER5B DNA MER1_type 75 164 -14 262 301 130 30 chrX 12876125 12876336 -164097804 + MIR SINE MIR 16 241 -21 2484 54 0 3 chrX 12877092 12877386 -164096754 - AluY SINE Alu -18 293 1 1218 96 110 10 chrX 12877927 12878136 -164096004 + L1MA9 LINE L1 6082 6311 -1 222 302 60 43 chrX 12878418 12878534 -164095606 - L3b LINE CR1 -87 1496 1379 2050 105 0 0 chrX 12878534 12878800 -164095340 - AluY SINE Alu -19 292 27 4873 166 47 12 chrX 12878975 12879533 -164094607 + L1MB8 LINE L1 4456 4993 -1185 2224 96 0 0 chrX 12879533 12879850 -164094290 + AluSc SINE Alu 1 317 0 4873 166 47 12 chrX 12879850 12880803 -164093337 + L1MB8 LINE L1 4993 6178 0 261 0 0 0 chrX 12881465 12881494 -164092646 + (TG)n Simple_repeat Simple_repeat 2 30 0 207 162 0 0 chrX 12882220 12882257 -164091883 + (ATG)n Simple_repeat Simple_repeat 3 39 0 641 197 68 20 chrX 12883157 12883304 -164090836 - MIR SINE MIR -104 158 5 866 121 0 0 chrX 12883978 12884094 -164090046 + FLAM_C SINE Alu 1 116 -27 189 147 0 0 chrX 12884105 12884139 -164090001 + (CCTA)n Simple_repeat Simple_repeat 1 34 0 207 69 0 0 chrX 12884145 12884174 -164089966 + (CATA)n Simple_repeat Simple_repeat 2 30 0 182 296 137 56 chrX 12884422 12884863 -164089277 + L2 LINE L2 2550 3053 -219 1991 123 0 7 chrX 12885081 12885399 -164088741 - AluSx SINE Alu 0 316 1 24 0 0 0 chrX 12886070 12886094 -164088046 + AT_rich Low_complexity Low_complexity 1 24 0 2193 120 7 0 chrX 12887051 12887350 -164086790 - AluSx SINE Alu -11 301 1 213 94 0 0 chrX 12887768 12887800 -164086340 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 225 310 115 0 chrX 12888229 12888316 -164085824 + MIR3 SINE MIR 91 187 -21 549 173 24 71 chrX 12888683 12888810 -164085330 + L1ME3 LINE L1 6022 6142 -20 2444 46 0 29 chrX 12888810 12889116 -164085024 - AluY SINE Alu -14 297 1 26 50 0 0 chrX 12889283 12889323 -164084817 + AT_rich Low_complexity Low_complexity 1 40 0 308 235 82 0 chrX 12889774 12889859 -164084281 - MIR SINE MIR 0 262 171 5489 103 26 19 chrX 12890719 12890974 -164083166 + L1MA1 LINE L1 5534 5786 -516 5489 83 28 16 chrX 12890974 12891725 -164082415 + L1MA1 LINE L1 5534 6297 -5 5489 103 26 19 chrX 12891725 12891806 -164082334 + L1MA1 LINE L1 5786 6297 -5 1676 106 0 0 chrX 12891812 12892038 -164082102 - Tigger3b DNA MER2_type -23 1208 983 1203 137 41 25 chrX 12892038 12892235 -164081905 + AluJb SINE Alu 81 280 -32 707 69 10 0 chrX 12892236 12892338 -164081802 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 3237 122 27 89 chrX 12892338 12892672 -164081468 - Tigger3b DNA MER2_type -2050 978 706 1270 90 22 6 chrX 12892672 12892850 -164081290 + L1MA1 LINE L1 6122 6302 0 3237 122 27 89 chrX 12892850 12893188 -164080952 - Tigger3b DNA MER2_type -2322 706 348 1210 99 6 0 chrX 12893288 12893449 -164080691 + AluSg/x SINE Alu 142 303 -7 1168 186 86 45 chrX 12893449 12893718 -164080422 - Tigger3b DNA MER2_type -940 291 12 2036 91 4 0 chrX 12895839 12896104 -164078036 + AluSp SINE Alu 32 297 -16 220 279 0 15 chrX 12896104 12896172 -164077968 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 215 300 302 23 chrX 12896626 12897239 -164076901 - L2 LINE L2 -594 2720 1937 243 212 91 0 chrX 12898073 12898139 -164076001 - MIR SINE MIR -92 116 45 345 341 61 16 chrX 12898164 12898410 -164075730 + L2 LINE L2 2212 2468 -846 * 563 272 38 16 chrX 12898385 12898569 -164075571 + MIR SINE MIR 22 209 -53 509 256 112 87 chrX 12898586 12898953 -164075187 + L2 LINE L2 2933 3308 -5 466 344 11 26 chrX 12899538 12899727 -164074413 + MIR SINE MIR 4 189 -73 261 0 0 0 chrX 12900060 12900089 -164074051 + (CA)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chrX 12901371 12901397 -164072743 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chrX 12902584 12902607 -164071533 + (A)n Simple_repeat Simple_repeat 1 23 0 2291 206 68 35 chrX 12902645 12903173 -164070967 + L1ME2 LINE L1 5572 6122 -42 1859 157 0 20 chrX 12903173 12903479 -164070661 + AluJo SINE Alu 1 300 -12 2291 206 68 35 chrX 12903479 12903524 -164070616 + L1ME2 LINE L1 6122 6164 0 355 234 81 27 chrX 12904008 12904119 -164070021 - MIR SINE MIR -70 192 76 216 0 0 0 chrX 12905880 12905904 -164068236 + (A)n Simple_repeat Simple_repeat 1 24 0 1832 143 11 4 chrX 12905958 12906261 -164067879 - AluJo SINE Alu 0 305 1 2330 94 0 0 chrX 12906825 12907122 -164067018 - AluSx SINE Alu -15 297 1 444 219 114 0 chrX 12907451 12907556 -164066584 + MER103 DNA DNA 1 117 -49 754 262 35 22 chrX 12908481 12908710 -164065430 - MIR SINE MIR -10 252 21 2195 101 0 20 chrX 12909333 12909639 -164064501 + AluSq SINE Alu 1 300 -13 1860 140 24 14 chrX 12910424 12910716 -164063424 - AluJo SINE Alu -7 305 11 2202 88 0 70 chrX 12911518 12911848 -164062292 + AluSg SINE Alu 1 307 -3 2301 96 0 10 chrX 12912761 12913073 -164061067 + AluSq SINE Alu 1 309 -4 1787 176 3 7 chrX 12914897 12915187 -164058953 + AluJb SINE Alu 1 289 -23 491 228 2 0 chrX 12916693 12916809 -164057331 + MLT1J1 LTR MaLR 68 161 -285 321 244 36 0 chrX 12916935 12917023 -164057117 + MLT1J2 LTR MaLR 353 443 -3 443 276 0 17 chrX 12917468 12917584 -164056556 + L2 LINE L2 3199 3312 -1 246 184 0 0 chrX 12917774 12917823 -164056317 - L1MD1 LINE L1 -14 6228 6180 630 263 106 17 chrX 12918087 12918323 -164055817 - MIR SINE MIR -5 257 1 239 274 16 16 chrX 12919034 12919096 -164055044 + MIR SINE MIR 20 81 -181 391 313 80 101 chrX 12919632 12919958 -164054182 + L2 LINE L2 2954 3272 0 212 216 20 20 chrX 12919954 12920005 -164054135 + MIR SINE MIR 138 188 -74 * 2174 110 0 25 chrX 12920378 12920666 -164053474 + AluSx SINE Alu 1 282 -30 225 0 0 0 chrX 12920666 12920691 -164053449 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 2174 110 0 25 chrX 12920691 12920720 -164053420 + AluSx SINE Alu 282 310 -2 1082 199 82 57 chrX 12921231 12921364 -164052776 + MER58B DNA MER1_type 29 157 -2263 2116 121 3 19 chrX 12921364 12921677 -164052463 + AluSx SINE Alu 1 308 -4 1082 199 82 57 chrX 12921677 12921825 -164052315 + MER58B DNA MER1_type 157 317 -24 7638 25 0 0 chrX 12921825 12922659 -164051481 + L1PA4 LINE L1 5319 6152 -3 873 185 63 39 chrX 12922705 12922910 -164051230 - Charlie5 DNA MER1_type -2398 214 5 452 374 14 14 chrX 12922918 12923140 -164051000 - MIR SINE MIR -38 224 3 412 307 69 26 chrX 12923188 12923377 -164050763 - MIR3 SINE MIR -4 204 8 200 337 116 0 chrX 12923760 12923846 -164050294 + MIR SINE MIR 37 132 -76 369 0 0 0 chrX 12924407 12924448 -164049692 + (CA)n Simple_repeat Simple_repeat 2 42 0 1039 201 13 40 chrX 12924819 12925043 -164049097 - MER20 DNA MER1_type -1 218 1 1069 195 98 35 chrX 12925480 12925657 -164048483 + Charlie4a DNA MER1_type 25 229 -1732 2207 85 0 7 chrX 12925657 12925975 -164048165 - AluSc SINE Alu 0 316 1 1069 195 98 35 chrX 12925975 12926083 -164048057 + Charlie4a DNA MER1_type 229 329 -179 1759 103 0 0 chrX 12926094 12926318 -164047822 - AluSg/x SINE Alu -13 299 76 847 132 0 0 chrX 12926318 12926439 -164047701 - AluSq/x SINE Alu -192 121 1 821 157 116 6 chrX 12926440 12926612 -164047528 + Charlie4a DNA MER1_type 315 505 -3 675 192 82 0 chrX 12926807 12926953 -164047187 + MER96 DNA MER1_type? 10 167 -8 387 0 0 0 chrX 12926972 12927015 -164047125 + (CA)n Simple_repeat Simple_repeat 2 44 0 779 208 6 66 chrX 12927055 12927238 -164046902 + MER5B DNA MER1_type 7 178 0 267 288 24 48 chrX 12927596 12927721 -164046419 + LTR37B LTR ERV1 73 194 -274 * 569 244 34 46 chrX 12927714 12927962 -164046178 + LTR37B LTR ERV1 111 390 -78 717 320 52 55 chrX 12928001 12928357 -164045783 - L2 LINE L2 -254 3018 2663 1614 184 46 7 chrX 12928357 12928639 -164045501 + AluJb SINE Alu 1 293 -19 1671 124 7 44 chrX 12928640 12928915 -164045225 + AluJb SINE Alu 39 303 -9 717 320 52 55 chrX 12928915 12929197 -164044943 - L2 LINE L2 -608 2664 2378 333 331 108 22 chrX 12930107 12930246 -164043894 + MIR SINE MIR 9 159 -103 323 323 63 13 chrX 12930326 12930484 -164043656 + MLT1I LTR MaLR 41 206 -203 256 255 161 50 chrX 12930517 12930678 -164043462 + MLT1J2 LTR MaLR 269 447 -3 182 132 26 26 chrX 12930690 12930728 -164043412 + MIR SINE MIR 154 191 -71 568 260 13 7 chrX 12932559 12932709 -164041431 + L1MC5 LINE L1 7746 7896 -65 771 133 37 52 chrX 12933075 12933210 -164040930 + FLAM_C SINE Alu 1 133 0 189 107 0 0 chrX 12935843 12935871 -164038269 + (TCCC)n Simple_repeat Simple_repeat 1 28 0 1197 291 34 47 chrX 12935872 12936037 -164038103 - L1MC4 LINE L1 -144 7898 7732 2893 77 3 22 chrX 12936037 12936399 -164037741 + THE1A LTR MaLR 1 355 0 1197 291 34 47 chrX 12936399 12936824 -164037316 - L1MC4 LINE L1 -310 7732 7316 298 286 107 36 chrX 12936984 12937124 -164037016 - MIR SINE MIR -93 169 20 1568 156 41 32 chrX 12937134 12937449 -164036691 + MER58D DNA MER1_type 1 318 -68 216 0 0 0 chrX 12937889 12937913 -164036227 + (A)n Simple_repeat Simple_repeat 1 24 0 719 257 64 24 chrX 12937919 12938192 -164035948 + L1MC/D LINE L1 5529 5812 -311 854 301 77 39 chrX 12938192 12938726 -164035414 + LTR67 LTR ERVL 2 555 -2 1602 171 10 17 chrX 12939028 12939320 -164034820 - AluJo SINE Alu -22 290 1 418 164 0 0 chrX 12939326 12939387 -164034753 - AluJ/FLAM SINE Alu -251 61 1 264 250 0 0 chrX 12939935 12939991 -164034149 - MIR SINE MIR 0 262 207 186 189 0 0 chrX 12940383 12940420 -164033720 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 376 345 45 23 chrX 12942267 12942444 -164031696 + LTR67 LTR ERVL 3 183 -374 2706 92 17 3 chrX 12942468 12942828 -164031312 - L1PB1 LINE L1 -5 6146 5782 294 247 0 0 chrX 12942837 12942914 -164031226 + (TATG)n Simple_repeat Simple_repeat 2 78 0 236 78 0 118 chrX 12942914 12942965 -164031175 - L1MC4 LINE L1 -1339 6703 6659 604 141 31 6 chrX 12942996 12943105 -164031035 - L1PB1 LINE L1 -360 5791 5685 346 274 14 82 chrX 12943306 12943452 -164030688 + LTR67 LTR ERVL 413 548 -9 771 241 33 19 chrX 12943512 12943976 -164030164 - MLT1H LTR MaLR 0 549 1 2228 165 37 0 chrX 12944861 12945213 -164028927 - MLT1A1 LTR MaLR 0 365 1 2228 138 49 103 chrX 12945239 12945520 -164028620 - MLT1C LTR MaLR 0 467 223 257 0 30 0 chrX 12945520 12945553 -164028587 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2228 138 49 103 chrX 12945553 12945765 -164028375 - MLT1C LTR MaLR -244 223 1 454 289 16 0 chrX 12945871 12945992 -164028148 - MLT1J LTR MaLR -358 153 31 5538 182 35 30 chrX 12946412 12946649 -164027491 - L1MD1 LINE L1 0 6242 6008 2173 128 7 0 chrX 12946649 12946945 -164027195 - AluSx SINE Alu -14 298 1 5538 182 35 30 chrX 12946945 12948651 -164025489 - L1MD1 LINE L1 -234 6008 4290 1428 199 37 25 chrX 12948653 12948975 -164025165 - L1M4 LINE L1 -1623 4523 4198 1254 163 30 52 chrX 12948976 12949246 -164024894 - AluJo SINE Alu -13 299 36 667 188 0 0 chrX 12949273 12949390 -164024750 - L1M4 LINE L1 -1950 4196 4080 1163 217 14 5 chrX 12949470 12949691 -164024449 + MER58A DNA MER1_type 2 224 0 1775 151 0 77 chrX 12950038 12950362 -164023778 + AluJo SINE Alu 1 299 -13 424 146 0 125 chrX 12950415 12950511 -164023629 + MER81 DNA DNA 1 84 -30 1826 340 51 28 chrX 12952729 12953259 -164020881 + MLT1F LTR MaLR 1 542 0 484 295 52 43 chrX 12953325 12953467 -164020673 + MIR SINE MIR 3 150 -112 1928 138 0 7 chrX 12953467 12953780 -164020360 + AluSx SINE Alu 1 311 0 484 295 52 43 chrX 12953780 12953846 -164020294 + MIR SINE MIR 150 214 -48 822 256 99 48 chrX 12954102 12954132 -164020008 - MLT1I LTR MaLR -4 405 378 1163 152 71 29 chrX 12954132 12954342 -164019798 - MER20 DNA MER1_type 0 219 1 822 256 99 48 chrX 12954342 12954604 -164019536 - MLT1I LTR MaLR -31 378 98 2927 135 11 44 chrX 12954913 12955455 -164018685 + L1MB7 LINE L1 5629 6152 -32 1065 148 42 9 chrX 12956454 12956670 -164017470 - Charlie4a DNA MER1_type -3 505 283 2228 81 14 14 chrX 12956676 12956998 -164017142 + AluSc SINE Alu 1 322 0 1096 109 12 18 chrX 12956998 12957163 -164016977 + AluSg/x SINE Alu 133 296 -14 1172 194 45 22 chrX 12957175 12957443 -164016697 - Charlie4a DNA MER1_type -231 277 4 446 283 118 45 chrX 12959199 12959513 -164014627 + MLT1H1 LTR MaLR 217 553 -2 1893 148 13 16 chrX 12959530 12959841 -164014299 - AluJo SINE Alu -2 310 1 1089 130 46 8 chrX 12961158 12961368 -164012772 + L1MB4 LINE L1 5964 6174 0 604 212 53 0 chrX 12961608 12961740 -164012400 + L1MC4 LINE L1 7346 7484 -558 5856 98 2 2 chrX 12961740 12962545 -164011595 + L1PA13 LINE L1 5340 6144 -19 966 193 51 99 chrX 12962553 12962617 -164011523 + L1MC4 LINE L1 7470 7536 -506 1991 102 38 41 chrX 12962617 12962910 -164011230 - AluSx SINE Alu -20 292 1 966 193 51 99 chrX 12962910 12963197 -164010943 + L1MC4 LINE L1 7536 7804 -238 529 215 114 0 chrX 12963229 12963378 -164010762 + L1MC4a LINE L1 6302 6467 -1341 24 53 0 0 chrX 12963452 12963490 -164010650 + AT_rich Low_complexity Low_complexity 1 38 0 539 176 54 57 chrX 12963493 12963643 -164010497 + L1MC4 LINE L1 6154 8042 0 237 221 156 0 chrX 12963698 12963775 -164010365 + MLT1J1 LTR MaLR 358 446 0 2377 233 80 5 chrX 12963870 12964486 -164009654 + L1MC4a LINE L1 7146 7788 -20 248 263 110 8 chrX 12964542 12964660 -164009480 + HAL1 LINE L1 47 176 -2331 1819 208 108 34 chrX 12964777 12965312 -164008828 - HsTC2 DNA Tc2 -41 1857 1283 3541 170 40 31 chrX 12965418 12966547 -164007593 + L1MB8 LINE L1 4822 5950 -228 351 227 0 0 chrX 12966689 12966817 -164007323 + C-rich Low_complexity Low_complexity 1 128 0 6184 46 18 21 chrX 12966927 12967746 -164006394 + SVA Other Other 575 1390 0 25 0 0 0 chrX 12967746 12967771 -164006369 + AT_rich Low_complexity Low_complexity 1 25 0 1853 155 0 26 chrX 12968648 12968958 -164005182 - AluJb SINE Alu -10 302 1 3435 191 53 16 chrX 12968990 12969445 -164004695 - L1MA9 LINE L1 -48 6264 5768 441 0 0 0 chrX 12969445 12969494 -164004646 + (TG)n Simple_repeat Simple_repeat 2 50 0 3435 191 53 16 chrX 12969494 12969795 -164004345 - L1MA9 LINE L1 -544 5768 5480 3624 39 0 3 chrX 12970005 12970443 -164003697 - L1PA7 LINE L1 -20 6134 5700 468 271 17 68 chrX 12970441 12970677 -164003463 - L1MC5 LINE L1 -34 7927 7704 * 2159 79 10 39 chrX 12970678 12970983 -164003157 - AluSc SINE Alu -13 296 1 539 229 42 36 chrX 12971094 12971260 -164002880 - L1MC5 LINE L1 -14 7947 7781 1249 140 7 101 chrX 12971307 12971526 -164002614 - L1MB5 LINE L1 -8 6166 5977 1543 188 3 42 chrX 12971526 12971834 -164002306 + AluJo SINE Alu 7 302 -10 1249 140 7 101 chrX 12971834 12971892 -164002248 - L1MB5 LINE L1 -197 5977 5915 2061 216 36 57 chrX 12971900 12972355 -164001785 - L1MC5 LINE L1 -182 7779 7341 1490 146 112 10 chrX 12972355 12972649 -164001491 + MER33 DNA MER1_type 1 324 0 2061 216 36 57 chrX 12972649 12972877 -164001263 - L1MC5 LINE L1 -620 7341 7110 1275 171 23 85 chrX 12972879 12973184 -164000956 + AluJo SINE Alu 20 305 -7 420 218 20 0 chrX 12973197 12973298 -164000842 - L1MC5 LINE L1 -856 7105 7003 1751 148 43 4 chrX 12973328 12973605 -164000535 + AluJb SINE Alu 1 288 -24 4954 73 19 18 chrX 12973709 12974395 -163999745 - SVA Other Other -683 703 17 2453 109 23 0 chrX 12974606 12974955 -163999185 - MER46B DNA MER2_type -4 232 1 1425 203 114 3 chrX 12975286 12975592 -163998548 + MER58B DNA MER1_type 1 340 -1 1667 171 44 0 chrX 12975649 12975924 -163998216 + AluJb SINE Alu 1 287 -25 6097 58 9 5 chrX 12976096 12976858 -163997282 - SVA Other Other 0 1386 622 212 225 0 0 chrX 12976963 12977003 -163997137 + C-rich Low_complexity Low_complexity 1 40 0 637 249 126 52 chrX 12977790 12978155 -163995985 + MLT1J2 LTR MaLR 59 450 0 1714 216 202 6 chrX 12978567 12979077 -163995063 + L1ME3A LINE L1 5551 6160 -10 373 194 207 16 chrX 12979422 12979530 -163994610 + FLAM_A SINE Alu 11 116 -17 658 74 0 3 chrX 12979617 12979848 -163994292 + AluSx SINE Alu 1 300 -10 2305 82 0 17 chrX 12980088 12980381 -163993759 + AluSg SINE Alu 1 288 -22 2363 95 3 0 chrX 12980438 12980744 -163993396 + AluSx SINE Alu 1 307 -5 1260 203 14 17 chrX 12980990 12981286 -163992854 - L1MB8 LINE L1 0 6178 5884 2111 103 10 3 chrX 12981287 12981577 -163992563 - AluSx SINE Alu -19 293 2 2029 116 32 3 chrX 12982190 12982475 -163991665 - AluSq SINE Alu -20 293 1 2212 85 17 17 chrX 12982475 12982767 -163991373 - AluSc SINE Alu -16 293 1 2344 106 0 13 chrX 12982824 12983135 -163991005 - AluSx SINE Alu -5 307 1 2359 96 7 0 chrX 12983215 12983518 -163990622 - AluSg SINE Alu -5 305 1 2258 109 7 0 chrX 12983518 12983822 -163990318 - AluSp SINE Alu -2 311 6 2307 147 67 21 chrX 12983863 12984186 -163989954 + L1M4 LINE L1 5226 5579 -599 1501 179 37 24 chrX 12984186 12984482 -163989658 + AluJo SINE Alu 1 300 -12 2307 147 67 21 chrX 12984482 12984631 -163989509 + L1M4 LINE L1 5579 5720 -458 2448 58 7 0 chrX 12984632 12984924 -163989216 + AluY SINE Alu 1 294 -17 1749 141 6 42 chrX 12985296 12985609 -163988531 - AluY SINE Alu -9 302 1 1569 179 64 67 chrX 12985727 12986118 -163988022 + L1MC4 LINE L1 7515 7904 -138 3275 135 146 8 chrX 12986141 12986743 -163987397 + LTR34 LTR ERV1 13 697 -2 192 40 0 0 chrX 12986743 12986768 -163987372 + (GA)n Simple_repeat Simple_repeat 2 26 0 519 173 78 2 chrX 12986776 12986894 -163987246 + L1MC4 LINE L1 7859 8036 -6 1730 176 150 21 chrX 12987087 12987365 -163986775 + MLT1F1 LTR MaLR 138 479 -88 4008 125 17 40 chrX 12987365 12988015 -163986125 + MER41B LTR ERV1 1 635 0 1730 176 150 21 chrX 12988015 12988117 -163986023 + MLT1F1 LTR MaLR 479 567 0 3161 129 23 0 chrX 12988595 12989076 -163985064 - L1PA16 LINE L1 -9 6157 5666 1201 239 85 31 chrX 12989752 12990175 -163983965 - LTR16A1 LTR ERVL 0 457 12 1095 254 146 23 chrX 12990209 12990607 -163983533 + MLT1J2 LTR MaLR 1 447 -3 246 128 0 0 chrX 12991190 12991229 -163982911 + (CA)n Simple_repeat Simple_repeat 2 40 0 1948 146 20 0 chrX 12991289 12991584 -163982556 - AluJo SINE Alu -11 301 1 2056 119 17 0 chrX 12991613 12991906 -163982234 + AluSg SINE Alu 1 298 -12 392 179 11 0 chrX 12992143 12992197 -163981943 + GA-rich Low_complexity Low_complexity 1 58 -38 2852 86 0 0 chrX 12992197 12992559 -163981581 - THE1B LTR MaLR -2 362 1 392 179 11 0 chrX 12992559 12992599 -163981541 + GA-rich Low_complexity Low_complexity 58 96 0 1134 126 11 49 chrX 12992918 12993047 -163981093 - Tigger3(Golem) DNA MER2_type 0 3028 2906 2356 127 50 75 chrX 12993047 12993452 -163980688 + MER65A LTR ERV1 1 395 -50 1853 164 3 25 chrX 12993452 12993769 -163980371 - AluJb SINE Alu -2 310 1 2356 127 50 75 chrX 12993769 12993819 -163980321 + MER65A LTR ERV1 395 445 0 1134 126 11 49 chrX 12993819 12993872 -163980268 - Tigger3(Golem) DNA MER2_type -122 2906 2853 2555 142 47 0 chrX 12993874 12994283 -163979857 - MSTA LTR MaLR 0 428 1 10097 154 22 3 chrX 12994283 12995903 -163978237 - MSTA-int LTR MaLR 0 1651 1 361 214 38 69 chrX 12996915 12997046 -163977094 + MIR SINE MIR 93 219 -43 2059 149 10 0 chrX 12997306 12997615 -163976525 - AluSx SINE Alu 0 312 1 847 146 0 42 chrX 12997632 12997776 -163976364 - FLAM_C SINE Alu -5 138 1 4775 113 38 11 chrX 12998310 12998489 -163975651 - L1MA4 LINE L1 -4 6296 6123 2037 137 10 3 chrX 12998489 12998782 -163975358 + AluJb SINE Alu 1 295 -17 4775 113 38 11 chrX 12998782 12999365 -163974775 - L1MA4 LINE L1 -177 6123 5513 5588 126 11 7 chrX 12999372 13000359 -163973781 - L1MA4 LINE L1 -743 5403 4469 2986 197 49 57 chrX 13000459 13000496 -163973644 - L1ME2 LINE L1 -2 6162 6126 2045 131 7 0 chrX 13000496 13000821 -163973319 - AluJb SINE Alu 0 312 1 2986 197 49 57 chrX 13000821 13000909 -163973231 - L1ME2 LINE L1 -38 6126 6039 1955 140 10 3 chrX 13000909 13001202 -163972938 - AluJb SINE Alu -17 295 1 2986 197 49 57 chrX 13001202 13001580 -163972560 - L1ME2 LINE L1 -125 6039 5660 239 0 0 31 chrX 13001580 13001612 -163972528 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2986 197 49 57 chrX 13001612 13001720 -163972420 - L1ME2 LINE L1 -504 5660 5553 1913 79 0 17 chrX 13001720 13001961 -163972179 - AluSx SINE Alu -18 294 58 2986 197 49 57 chrX 13001961 13002177 -163971963 - L1ME2 LINE L1 -611 5553 5338 412 231 196 0 chrX 13003224 13003367 -163970773 - MER5A DNA MER1_type -7 182 12 1628 168 51 0 chrX 13003438 13003712 -163970428 - AluJb SINE Alu -24 288 1 595 99 0 40 chrX 13003718 13003819 -163970321 - L1MA4A LINE L1 -6 6297 6201 356 85 0 0 chrX 13003821 13003868 -163970272 - L1MA4 LINE L1 -56 6244 6198 1243 91 61 30 chrX 13003870 13004003 -163970137 - L1MA4 LINE L1 -56 6244 6102 2313 129 65 45 chrX 13004003 13004226 -163969914 - MSTB LTR MaLR 0 426 190 2096 128 3 3 chrX 13004226 13004523 -163969617 - AluSx SINE Alu -15 297 1 2313 129 65 45 chrX 13004523 13004717 -163969423 - MSTB LTR MaLR -236 190 1 1243 91 61 30 chrX 13004717 13004781 -163969359 - L1MA4 LINE L1 -198 6102 6041 312 241 92 64 chrX 13004948 13005089 -163969051 + MLT1L LTR MaLR 168 312 -303 1878 146 50 0 chrX 13005096 13005377 -163968763 - AluJo SINE Alu -17 295 1 2356 96 0 7 chrX 13005958 13006261 -163967879 - AluSx SINE Alu -11 301 1 385 171 0 110 chrX 13006373 13006478 -163967662 + L1M1 LINE L1 11 546 -6943 2126 92 33 0 chrX 13006479 13006751 -163967389 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 13006753 13006776 -163967364 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 204 352 0 28 chrX 13006785 13006856 -163967284 - L2 LINE L2 -79 3193 3125 2005 110 38 0 chrX 13006895 13007186 -163966954 + AluJo SINE Alu 1 302 -10 319 174 111 0 chrX 13007845 13007933 -163966207 + L1MC/D LINE L1 5600 5696 -642 334 327 84 34 chrX 13008030 13008409 -163965731 + L1ME LINE L1 5381 5778 -384 2375 79 3 3 chrX 13008778 13009070 -163965070 + AluSp SINE Alu 1 292 -21 412 286 0 13 chrX 13009300 13009454 -163964686 - THE1B LTR MaLR -34 330 179 315 0 0 0 chrX 13011593 13011628 -163962512 + (TGG)n Simple_repeat Simple_repeat 1 35 0 2400 89 0 0 chrX 13011928 13012231 -163961909 - AluSx SINE Alu -9 303 1 4804 128 31 26 chrX 13012239 13013039 -163961101 - L1MC1 LINE L1 0 6333 5530 384 281 42 0 chrX 13013119 13013215 -163960925 - L2 LINE L2 -25 3288 3189 1889 154 14 3 chrX 13013290 13013583 -163960557 + AluJo SINE Alu 1 296 -16 1478 154 62 26 chrX 13013908 13014024 -163960116 + AluJo SINE Alu 1 111 -197 540 0 0 0 chrX 13014024 13014084 -163960056 + (CA)n Simple_repeat Simple_repeat 2 61 0 1478 154 62 26 chrX 13014084 13014265 -163959875 + AluJo SINE Alu 111 308 0 2319 65 7 7 chrX 13014605 13014911 -163959229 - L1PA7 LINE L1 -4 6150 5845 1528 111 202 4 chrX 13015365 13015618 -163958522 + AluSq SINE Alu 1 303 -10 447 35 0 0 chrX 13015618 13015675 -163958465 + (CA)n Simple_repeat Simple_repeat 2 58 0 204 219 0 0 chrX 13016038 13016079 -163958061 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 1891 161 3 22 chrX 13016464 13016781 -163957359 - AluJb SINE Alu -1 311 1 440 296 28 23 chrX 13016791 13016967 -163957173 - L1MC5 LINE L1 -36 7925 7749 2366 94 0 7 chrX 13017327 13017634 -163956506 - AluSx SINE Alu -7 305 1 319 253 121 10 chrX 13017762 13017861 -163956279 + MER81 DNA DNA 3 112 -2 1808 206 228 8 chrX 13017875 13018361 -163955779 - MLT1E LTR MaLR 0 593 1 589 148 71 90 chrX 13018655 13018810 -163955330 + Charlie4 DNA MER1_type 1 152 -1809 1497 156 0 0 chrX 13018811 13019036 -163955104 - AluJb SINE Alu 0 312 88 1886 162 0 7 chrX 13019648 13019945 -163954195 + AluSx SINE Alu 1 295 -17 1076 197 10 5 chrX 13020284 13020477 -163953663 - MER20 DNA MER1_type -3 216 23 319 163 23 70 chrX 13020529 13020615 -163953525 - MIR SINE MIR -109 153 72 558 246 99 53 chrX 13020989 13021376 -163952764 - LTR33 LTR ERVL -110 413 1 1635 178 17 7 chrX 13021624 13021916 -163952224 - AluJb SINE Alu -17 295 1 9186 176 27 28 chrX 13022202 13022601 -163951539 + L1M2 LINE L1 3502 3900 -2412 1888 153 3 13 chrX 13022601 13022909 -163951231 + AluJo SINE Alu 1 305 -7 9186 176 27 28 chrX 13022909 13024618 -163949522 + L1M2 LINE L1 3900 5606 -706 2568 70 3 0 chrX 13025148 13025460 -163948680 - AluSp SINE Alu 0 313 1 1771 147 3 29 chrX 13025461 13025773 -163948367 - AluJo SINE Alu -8 304 1 501 209 68 41 chrX 13026241 13026439 -163947701 + MLT1H LTR MaLR 1 216 -326 463 209 0 11 chrX 13026439 13026530 -163947610 - LTR16B LTR ERVL -2 462 373 514 111 0 0 chrX 13026555 13026627 -163947513 + MADE1 DNA Mariner 9 80 0 2057 220 31 43 chrX 13026631 13026683 -163947457 - L1ME3 LINE L1 -52 6110 6059 2230 102 7 0 chrX 13026683 13026978 -163947162 + AluSx SINE Alu 1 297 -15 2057 220 31 43 chrX 13026978 13027222 -163946918 - L1ME3 LINE L1 -103 6059 5820 2254 107 7 0 chrX 13027222 13027521 -163946619 - AluSc SINE Alu -8 301 1 2057 220 31 43 chrX 13027521 13027763 -163946377 - L1ME3 LINE L1 -342 5820 5577 219 344 0 0 chrX 13027844 13027908 -163946232 + L2 LINE L2 3126 3189 -83 31 0 0 0 chrX 13027921 13027952 -163946188 + AT_rich Low_complexity Low_complexity 1 31 0 725 92 0 10 chrX 13027954 13028052 -163946088 - HY3 scRNA scRNA -4 97 1 1750 160 6 45 chrX 13028115 13028428 -163945712 + AluJb SINE Alu 1 301 -11 236 307 27 0 chrX 13028799 13028874 -163945266 - MLT1K LTR MaLR 0 588 512 249 56 19 56 chrX 13028966 13029020 -163945120 + (CAAAAA)n Simple_repeat Simple_repeat 2 53 0 374 167 26 0 chrX 13029190 13029268 -163944872 + CT-rich Low_complexity Low_complexity 1 80 0 2126 122 7 3 chrX 13029290 13029586 -163944554 - AluSq SINE Alu -16 297 1 390 191 24 12 chrX 13029735 13029819 -163944321 + LTR37B LTR ERV1 1 85 -383 554 253 32 13 chrX 13029993 13030151 -163943989 + MER110 LTR ERV1 316 476 -15 1615 195 0 3 chrX 13030201 13030505 -163943635 + AluJo SINE Alu 1 303 0 344 313 119 6 chrX 13030739 13030915 -163943225 + L2 LINE L2 1882 2077 -1237 2266 172 14 3 chrX 13031348 13031709 -163942431 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chrX 13032213 13032235 -163941905 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1693 11 16 0 chrX 13032235 13032421 -163941719 - L1PA3 LINE L1 -18 6137 5949 1382 228 36 31 chrX 13032455 13032595 -163941545 + LTR37B LTR ERV1 1 139 -329 2502 56 0 7 chrX 13032595 13032900 -163941240 - AluY SINE Alu -6 305 3 1382 228 36 31 chrX 13032900 13033180 -163940960 + LTR37B LTR ERV1 139 423 -45 912 247 50 70 chrX 13033188 13033589 -163940551 - HAL1 LINE L1 -2111 396 4 26 0 0 0 chrX 13033722 13033748 -163940392 + AT_rich Low_complexity Low_complexity 1 26 0 4355 114 16 22 chrX 13033831 13033872 -163940268 + L1MA4A LINE L1 5627 5667 -636 1826 164 3 3 chrX 13033872 13034185 -163939955 + AluJo SINE Alu 1 313 0 4355 114 16 22 chrX 13034185 13034811 -163939329 + L1MA4A LINE L1 5667 6291 -12 812 320 81 17 chrX 13035163 13035640 -163938500 + MLT1K LTR MaLR 27 569 -19 2033 164 0 0 chrX 13036654 13036964 -163937176 + AluSx SINE Alu 1 310 -2 3343 127 2 2 chrX 13036977 13037490 -163936650 + L1MA4 LINE L1 4491 5003 -1143 * 6074 106 13 11 chrX 13037460 13038372 -163935768 + L1MA4 LINE L1 5381 6294 -6 2849 106 37 0 chrX 13038541 13038948 -163935192 - L1MB2 LINE L1 -1 6170 5749 26 30 0 0 chrX 13038962 13038995 -163935145 + AT_rich Low_complexity Low_complexity 1 33 0 441 0 0 0 chrX 13039065 13039114 -163935026 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 357 137 51 0 chrX 13039256 13039373 -163934767 + (TA)n Simple_repeat Simple_repeat 2 124 0 3830 145 67 26 chrX 13040139 13040823 -163933317 - L1MB7 LINE L1 -16 6168 5457 387 224 35 35 chrX 13042265 13042381 -163931759 - L1ME3A LINE L1 0 6170 6055 532 265 32 22 chrX 13042523 13042708 -163931432 - MIR SINE MIR 0 262 76 734 221 84 13 chrX 13042794 13042948 -163931192 + FRAM SINE Alu 1 165 -1 1782 121 10 49 chrX 13043056 13043361 -163930779 + AluSx SINE Alu 1 293 -19 277 323 166 22 chrX 13043701 13043924 -163930216 + MIR SINE MIR 2 256 -6 2318 76 7 0 chrX 13044450 13044777 -163929363 - AluSg SINE Alu 0 347 19 445 271 89 26 chrX 13045082 13045351 -163928789 - L1MC4a LINE L1 -1913 5895 5610 183 306 127 30 chrX 13045580 13045714 -163928426 - L3 LINE CR1 -163 1414 1268 21 0 0 0 chrX 13045765 13045786 -163928354 + AT_rich Low_complexity Low_complexity 1 21 0 784 224 148 76 chrX 13045806 13046083 -163928057 - AluJo SINE Alu -4 298 2 797 200 0 8 chrX 13046203 13046333 -163927807 + FLAM_A SINE Alu 1 129 -4 295 253 40 30 chrX 13046383 13046482 -163927658 - L3 LINE CR1 -578 999 900 2308 83 10 26 chrX 13046482 13046794 -163927346 - AluSp SINE Alu -2 311 5 187 98 24 73 chrX 13047358 13047399 -163926741 - MIR SINE MIR -118 144 106 350 248 187 75 chrX 13048138 13048352 -163925788 + L1MC/D LINE L1 5583 5820 -1988 819 180 31 0 chrX 13048354 13048482 -163925658 + FLAM_C SINE Alu 2 133 -10 667 278 149 14 chrX 13048726 13049014 -163925126 - MER68 LTR ERV1 -7 555 229 1651 159 32 18 chrX 13049389 13049672 -163924468 + AluJo SINE Alu 1 287 -25 308 214 101 22 chrX 13049690 13049779 -163924361 - L1MC4a LINE L1 -528 5636 5541 2178 129 0 0 chrX 13049833 13050144 -163923996 - AluSx SINE Alu -1 311 1 2192 98 47 0 chrX 13050332 13050629 -163923511 - AluY SINE Alu 0 311 1 247 271 225 8 chrX 13051161 13051290 -163922850 + MER102b DNA MER1_type 185 341 0 779 308 53 30 chrX 13052472 13052833 -163921307 - MER68 LTR ERV1 -4 558 190 4183 153 58 64 chrX 13053757 13054462 -163919678 - L1MB7 LINE L1 -54 6130 5422 242 29 29 0 chrX 13054462 13054497 -163919643 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2009 146 0 0 chrX 13054499 13054787 -163919353 - AluSx SINE Alu -24 288 1 4183 153 58 64 chrX 13054787 13055011 -163919129 - L1MB7 LINE L1 -763 5421 5195 1833 156 3 0 chrX 13055012 13055300 -163918840 - AluJb SINE Alu -3 309 21 1991 118 14 14 chrX 13055683 13055979 -163918161 + AluSx SINE Alu 1 296 -16 1919 110 45 14 chrX 13056835 13057126 -163917014 + AluSx SINE Alu 1 300 -12 889 201 130 0 chrX 13057456 13057625 -163916515 + AluJo SINE Alu 11 201 -111 180 318 127 0 chrX 13059374 13059484 -163914656 - L2 LINE L2 -4 3268 3145 983 159 92 57 chrX 13059720 13059865 -163914275 - MER46A DNA MER2_type -2495 236 79 1714 138 15 90 chrX 13059865 13060199 -163913941 - AluSx SINE Alu -1 311 3 983 159 92 57 chrX 13060199 13060280 -163913860 - MER46A DNA MER2_type -2652 79 2 903 136 30 0 chrX 13060681 13060813 -163913327 + AluJo SINE Alu 1 136 -176 824 118 7 44 chrX 13061436 13061572 -163912568 + FAM SINE Alu 42 172 -13 459 159 0 0 chrX 13062634 13062703 -163911437 - L1MB7 LINE L1 -8 6176 6108 1056 175 76 22 chrX 13062753 13063017 -163911123 - L1MB8 LINE L1 -63 6115 5840 1852 123 0 55 chrX 13063150 13063458 -163910682 + AluJb SINE Alu 1 291 -21 2130 66 11 11 chrX 13063664 13063937 -163910203 - AluSc SINE Alu -36 273 1 1876 148 0 0 chrX 13063989 13064266 -163909874 - AluJb SINE Alu -20 292 16 286 179 119 0 chrX 13064329 13064396 -163909744 - Charlie2a DNA MER1_type -1275 1587 1513 370 193 33 31 chrX 13064922 13065036 -163909104 + L1MC4 LINE L1 7860 8039 -3 2282 82 0 0 chrX 13069921 13070201 -163903939 - AluSc SINE Alu -17 292 13 2183 89 14 3 chrX 13070343 13070635 -163903505 - AluSg SINE Alu -15 295 1 598 187 73 20 chrX 13070765 13070915 -163903225 + MER5A DNA MER1_type 32 189 0 189 300 57 0 chrX 13072616 13072686 -163901454 - MIR SINE MIR -142 120 47 197 255 0 0 chrX 13072726 13072773 -163901367 - MIR SINE MIR -4 258 212 270 310 0 53 chrX 13074246 13074359 -163899781 - MIR3 SINE MIR -18 190 84 1774 118 53 15 chrX 13074867 13075129 -163899011 - AluJb SINE Alu -35 277 6 290 169 13 91 chrX 13075740 13075817 -163898323 - MER116 DNA Mariner -9 71 1 541 241 9 0 chrX 13075930 13076042 -163898098 + MER81 DNA DNA 2 114 0 180 0 0 0 chrX 13076926 13076946 -163897194 + (TG)n Simple_repeat Simple_repeat 2 21 0 243 275 111 53 chrX 13078421 13078592 -163895548 + MIR SINE MIR 82 262 0 358 242 132 5 chrX 13078988 13079178 -163894962 + L1MC5 LINE L1 7449 7662 -299 1409 131 5 0 chrX 13079221 13079419 -163894721 - AluJo SINE Alu -113 199 1 439 184 80 16 chrX 13079422 13079547 -163894593 + L1MC5 LINE L1 7654 7786 -175 690 205 0 0 chrX 13079566 13079683 -163894457 + FLAM_C SINE Alu 2 118 -15 504 0 0 0 chrX 13079684 13079740 -163894400 + (CA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chrX 13079813 13079834 -163894306 + AT_rich Low_complexity Low_complexity 1 21 0 221 221 159 97 chrX 13082737 13082882 -163891258 - MIR SINE MIR -73 189 36 1907 107 0 0 chrX 13083380 13083624 -163890516 - AluSq SINE Alu -69 244 1 2021 116 14 7 chrX 13083627 13083919 -163890221 - AluSp SINE Alu -18 295 2 506 137 116 0 chrX 13084553 13084648 -163889492 + MER3 DNA MER1_type 103 208 -1 686 209 163 0 chrX 13084700 13084872 -163889268 - MER58C DNA MER1_type 0 215 16 524 128 0 43 chrX 13084949 13085043 -163889097 + AluJ/FRAM SINE Alu 223 312 0 831 257 79 69 chrX 13085051 13085630 -163888510 - L1ME LINE L1 -384 5786 5202 2170 105 0 30 chrX 13085630 13085934 -163888206 - AluSg SINE Alu -15 295 1 831 257 79 69 chrX 13085934 13086197 -163887943 - L1ME LINE L1 -968 5202 4943 1183 196 107 11 chrX 13086212 13086483 -163887657 - AluJo SINE Alu -5 297 1 320 296 53 35 chrX 13086507 13086676 -163887464 + L1M4 LINE L1 4538 4709 -1437 2363 76 3 0 chrX 13087085 13087373 -163886767 - AluSp SINE Alu -4 309 21 420 200 10 30 chrX 13087638 13087738 -163886402 + MER5A DNA MER1_type 9 106 -83 241 299 0 0 chrX 13087882 13087949 -163886191 + T-rich Low_complexity Low_complexity 4 70 0 2510 60 0 10 chrX 13088215 13088513 -163885627 - AluY SINE Alu -16 295 1 2370 59 7 19 chrX 13088554 13088861 -163885279 - AluY SINE Alu -8 303 1 2238 103 3 0 chrX 13089130 13089440 -163884700 + AluY SINE Alu 1 311 0 2291 81 7 7 chrX 13089500 13089798 -163884342 + AluY SINE Alu 1 298 -13 904 118 0 16 chrX 13091328 13091455 -163882685 + FLAM_C SINE Alu 1 125 -18 1052 101 7 0 chrX 13091822 13091960 -163882180 - AluSq/x SINE Alu -173 139 1 253 266 110 57 chrX 13092203 13092266 -163881874 - L1ME4a LINE L1 -86 6035 5977 2361 85 0 16 chrX 13092266 13092571 -163881569 - AluSq SINE Alu -13 300 1 253 266 110 57 chrX 13092571 13092675 -163881465 - L1ME4a LINE L1 -144 5977 5880 2058 153 0 0 chrX 13092675 13092976 -163881164 + AluSx SINE Alu 1 301 -11 253 266 110 57 chrX 13092976 13093089 -163881051 - L1ME4a LINE L1 -241 5880 5739 1868 137 33 13 chrX 13095488 13095788 -163878352 + AluJb SINE Alu 1 306 -6 303 290 35 28 chrX 13095932 13096077 -163878063 + L2 LINE L2 2534 2679 -635 2107 108 6 55 chrX 13096101 13096426 -163877714 - AluSx SINE Alu -3 309 1 704 335 73 32 chrX 13096720 13097471 -163876669 - L2 LINE L2 -24 3289 2503 255 61 0 0 chrX 13097561 13097594 -163876546 + (A)n Simple_repeat Simple_repeat 1 33 0 2299 97 3 10 chrX 13097622 13097933 -163876207 + AluSg SINE Alu 1 309 -1 2060 93 14 10 chrX 13098066 13098355 -163875785 + AluSq SINE Alu 1 290 -23 180 97 0 0 chrX 13098360 13098391 -163875749 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 417 270 7 47 chrX 13098401 13098549 -163875591 - L2 LINE L2 -845 2469 2328 267 306 33 25 chrX 13098725 13098846 -163875294 - MIR SINE MIR -84 178 57 695 229 167 5 chrX 13098902 13099112 -163875028 + LTR50 LTR ERVL 1 244 -551 419 152 130 0 chrX 13099119 13099211 -163874929 + LTR50 LTR ERVL 498 601 -194 348 195 98 0 chrX 13099246 13099328 -163874812 + LTR50 LTR ERVL 706 795 0 194 286 65 13 chrX 13099492 13099569 -163874571 - L2 LINE L2 -33 3280 3200 288 0 0 0 chrX 13099625 13099657 -163874483 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2227 90 7 0 chrX 13099672 13099961 -163874179 - AluSx SINE Alu -20 292 2 1016 159 0 6 chrX 13099976 13100133 -163874007 - FRAM SINE Alu -24 152 1 261 358 0 11 chrX 13100179 13100274 -163873866 - L2 LINE L2 -216 3056 2963 2291 126 0 0 chrX 13100294 13100604 -163873536 + AluSx SINE Alu 2 311 -1 635 177 85 8 chrX 13100621 13100751 -163873389 + MER5B DNA MER1_type 33 172 -6 279 0 0 0 chrX 13100803 13100834 -163873306 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 789 136 0 8 chrX 13100853 13100971 -163873169 + FLAM_C SINE Alu 2 118 -15 22 56 0 0 chrX 13101010 13101046 -163873094 + AT_rich Low_complexity Low_complexity 1 36 0 2418 202 118 44 chrX 13101419 13101543 -163872597 - L1MD3 LINE L1 0 8042 7929 191 36 36 0 chrX 13101543 13101571 -163872569 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 2418 202 118 44 chrX 13101571 13101958 -163872182 - L1MD3 LINE L1 -113 7929 7572 1752 81 0 0 chrX 13101958 13102169 -163871971 - AluSg/x SINE Alu -17 295 85 1993 124 0 20 chrX 13102173 13102471 -163871669 - AluSx SINE Alu -20 292 1 2418 202 118 44 chrX 13102471 13102671 -163871469 - L1MD3 LINE L1 -472 7570 7284 397 188 31 10 chrX 13103020 13103116 -163871024 + L2 LINE L2 2609 2706 -608 1005 237 98 17 chrX 13103293 13103639 -163870501 + L2 LINE L2 2920 3293 -20 402 21 0 0 chrX 13103639 13103686 -163870454 + (TG)n Simple_repeat Simple_repeat 2 48 0 291 85 0 0 chrX 13103687 13103734 -163870406 + (GA)n Simple_repeat Simple_repeat 2 48 0 577 156 37 59 chrX 13103805 13103889 -163870251 + MER69 DNA AcHobo 5 89 -1137 1904 156 3 0 chrX 13103889 13104194 -163869946 + AluJb SINE Alu 1 306 0 577 156 37 59 chrX 13104194 13104267 -163869873 + MER69 DNA AcHobo 89 203 -1023 969 273 90 31 chrX 13104287 13104851 -163869289 + MLT2F LTR ERVL 29 663 0 * 1308 223 139 32 chrX 13104851 13105127 -163869013 + MER69 DNA AcHobo 206 526 -2000 2423 98 0 0 chrX 13105127 13105424 -163868716 + AluSx SINE Alu 1 297 -15 1308 223 139 32 chrX 13105424 13105477 -163868663 + MER69 DNA AcHobo 526 572 -1954 1027 140 35 5 chrX 13105475 13105676 -163868464 + MER69 DNA AcHobo 2319 2525 -1 * 850 211 43 34 chrX 13105773 13105981 -163868159 - MER63A DNA MER1_type 0 210 1 2157 141 0 0 chrX 13106265 13106577 -163867563 - AluSx SINE Alu 0 312 1 574 184 69 46 chrX 13106777 13106951 -163867189 - MER104 DNA MER2_type -1 179 2 187 366 11 32 chrX 13106996 13107089 -163867051 - MIR SINE MIR -75 133 43 2148 88 0 69 chrX 13107283 13107603 -163866537 - AluSx SINE Alu -14 298 1 304 301 93 22 chrX 13107705 13107888 -163866252 + MIR SINE MIR 61 256 -6 869 168 76 56 chrX 13107992 13108040 -163866100 - MER3 DNA MER1_type -8 201 155 1576 165 72 7 chrX 13108040 13108331 -163865809 + AluJb SINE Alu 1 310 -2 869 168 76 56 chrX 13108331 13108479 -163865661 - MER3 DNA MER1_type -54 155 1 259 164 14 41 chrX 13109423 13109496 -163864644 - L1ME4a LINE L1 -49 6072 6002 1948 176 61 38 chrX 13109935 13110189 -163863951 - L1MB7 LINE L1 0 6184 5914 2009 84 28 39 chrX 13110189 13110499 -163863641 + AluSx SINE Alu 1 307 0 1948 176 61 38 chrX 13110499 13110670 -163863470 - L1MB7 LINE L1 -270 5914 5748 1042 191 71 0 chrX 13110671 13110896 -163863244 - L1MB7 LINE L1 -1338 4808 4568 1528 112 19 0 chrX 13111145 13111359 -163862781 - MER20 DNA MER1_type -1 218 1 637 265 71 25 chrX 13111790 13112028 -163862112 - MER112 DNA MER1_type -11 249 1 2185 83 0 4 chrX 13112314 13112591 -163861549 + AluY SINE Alu 18 293 -18 669 171 86 0 chrX 13112591 13112708 -163861432 + FLAM_A SINE Alu 2 128 -5 1368 198 90 7 chrX 13113136 13113424 -163860716 + AluJo SINE Alu 1 312 0 263 181 18 0 chrX 13113822 13113878 -163860262 - MIR3 SINE MIR -48 160 103 1978 117 59 61 chrX 13113880 13114289 -163859851 - L1MC2 LINE L1 0 6344 5937 2139 187 21 27 chrX 13114289 13114892 -163859248 - L1MC2 LINE L1 -743 5403 4856 574 285 56 40 chrX 13114961 13115210 -163858930 + MIR SINE MIR 5 257 -5 681 206 36 73 chrX 13115387 13115606 -163858534 + L1ME2 LINE L1 5945 6155 -9 1050 206 31 50 chrX 13115628 13115949 -163858191 + L1MC5 LINE L1 7609 7923 -38 1963 66 0 0 chrX 13116076 13116320 -163857820 - L1PA6 LINE L1 -5 6149 5906 955 139 53 43 chrX 13116331 13116518 -163857622 - L1MD2 LINE L1 -10 6349 6161 261 0 0 0 chrX 13116525 13116554 -163857586 + (TG)n Simple_repeat Simple_repeat 2 30 0 608 29 0 0 chrX 13116725 13116793 -163857347 + U4 snRNA snRNA 1 68 -77 1329 148 21 0 chrX 13117253 13117496 -163856644 + L1MA7 LINE L1 6044 6291 0 238 290 99 8 chrX 13118016 13118147 -163855993 - L1ME4a LINE L1 -2 6119 5977 295 274 29 20 chrX 13118297 13118399 -163855741 + L2 LINE L2 3210 3312 -1 323 261 33 0 chrX 13118541 13118633 -163855507 + MIR SINE MIR 41 135 -127 263 246 123 101 chrX 13118620 13118848 -163855292 - L2 LINE L2 -30 3283 3051 * 1812 153 29 13 chrX 13118872 13119179 -163854961 + AluJb SINE Alu 1 312 0 269 202 167 12 chrX 13119213 13119297 -163854843 - MER112 DNA MER1_type -7 253 157 1224 166 187 18 chrX 13119899 13120183 -163853957 + MER58B DNA MER1_type 5 336 -5 1673 179 140 19 chrX 13321413 13321842 -163652298 - MLT2B2 LTR ERVL -40 480 1 341 366 11 5 chrX 13321842 13322028 -163652112 - L1MC/D LINE L1 -2185 5623 5437 462 307 26 26 chrX 13322053 13322281 -163651859 - L1MC/D LINE L1 -762 5384 5157 649 229 66 16 chrX 13322436 13322619 -163651521 - HsTC2 DNA Tc2 -1092 806 615 641 133 37 0 chrX 13322750 13323062 -163651078 + (TA)n Simple_repeat Simple_repeat 1 323 0 264 56 74 19 chrX 13323093 13323147 -163650993 + (TTATA)n Simple_repeat Simple_repeat 2 58 0 187 146 36 0 chrX 13323187 13323242 -163650898 + (TA)n Simple_repeat Simple_repeat 2 58 0 376 263 76 36 chrX 13323433 13323683 -163650457 + L2 LINE L2 3000 3305 -8 2125 177 55 2 chrX 13323808 13324243 -163649897 + L1MB8 LINE L1 5581 6038 -140 772 143 0 7 chrX 13324342 13324489 -163649651 + L1MB8 LINE L1 6028 6173 -5 867 254 36 14 chrX 13324630 13324909 -163649231 + HsTC2 DNA Tc2 300 584 -1314 689 307 125 4 chrX 13325116 13325396 -163648744 + LTR16C LTR ERVL 18 331 -160 1190 146 26 0 chrX 13325614 13325806 -163648334 - MER20 DNA MER1_type 0 219 23 2335 119 14 24 chrX 13326253 13326622 -163647518 + MLT1A1 LTR MaLR 1 365 0 268 278 9 104 chrX 13326756 13326968 -163647172 + MLT1K LTR MaLR 397 588 0 1964 123 10 10 chrX 13327006 13327298 -163646842 - AluJb SINE Alu -20 292 1 22 0 0 0 chrX 13327430 13327452 -163646688 + AT_rich Low_complexity Low_complexity 1 22 0 7898 13 0 0 chrX 13327461 13329057 -163645083 + L1PA3 LINE L1 4560 6155 0 626 209 9 9 chrX 13329077 13329187 -163644953 + FLAM_A SINE Alu 1 110 -32 1415 153 48 8 chrX 13329280 13329528 -163644612 - AluJb SINE Alu -10 302 45 2227 74 0 3 chrX 13329742 13330090 -163644050 + AluY SINE Alu 1 347 0 2367 116 16 5 chrX 13330102 13330474 -163643666 - L1PA16 LINE L1 -9 6157 5782 1827 196 14 8 chrX 13330977 13331340 -163642800 + MLT1A1 LTR MaLR 1 365 0 2579 139 4 60 chrX 13334035 13334076 -163640064 - MSTC LTR MaLR 0 428 386 2308 115 3 3 chrX 13334076 13334388 -163639752 + AluSx SINE Alu 1 312 0 2579 139 4 60 chrX 13334388 13334799 -163639341 - MSTC LTR MaLR -42 386 1 320 252 137 7 chrX 13335703 13335842 -163638298 - L2 LINE L2 -45 3268 3112 1760 125 3 71 chrX 13335929 13336226 -163637914 + AluJb SINE Alu 33 309 -3 2058 147 28 14 chrX 13336444 13336804 -163637336 + MLT1A1 LTR MaLR 1 365 0 384 157 67 11 chrX 13336893 13336982 -163637158 - MER53 DNA DNA -94 95 2 262 278 0 14 chrX 13336995 13337067 -163637073 + LTR16C LTR ERVL 419 489 -2 487 267 45 40 chrX 13337212 13337421 -163636719 - MIR SINE MIR -34 228 16 2237 115 0 0 chrX 13337620 13337915 -163636225 + AluSx SINE Alu 1 295 -17 400 203 137 26 chrX 13337924 13338077 -163636063 - L1MC5 LINE L1 -48 7913 7744 724 178 20 14 chrX 13338088 13338234 -163635906 + MLT1D LTR MaLR 45 191 -314 1563 114 20 4 chrX 13338344 13338590 -163635550 - THE1C LTR MaLR -125 250 1 361 236 0 0 chrX 13338591 13338663 -163635477 + MLT1D LTR MaLR 338 409 -96 258 103 0 0 chrX 13338668 13338707 -163635433 - L1MB5 LINE L1 -108 6066 6028 21 0 0 0 chrX 13338713 13338734 -163635406 + AT_rich Low_complexity Low_complexity 1 21 0 2244 112 10 0 chrX 13338881 13339176 -163634964 - AluSg SINE Alu -12 298 1 996 268 10 3 chrX 13339208 13339503 -163634637 - L1MC4a LINE L1 -1893 5915 5619 213 39 0 0 chrX 13339806 13339832 -163634308 + (T)n Simple_repeat Simple_repeat 1 26 0 197 327 109 55 chrX 13340672 13340892 -163633248 + MIR SINE MIR 14 245 -17 1629 245 114 16 chrX 13340997 13341529 -163632611 + MER77 LTR ERV1 40 600 -5 387 285 52 17 chrX 13342621 13342793 -163631347 - MER5B DNA MER1_type 0 178 1 458 278 272 0 chrX 13343982 13344151 -163629989 + MIR SINE MIR 35 249 -13 617 271 81 55 chrX 13344168 13344552 -163629588 + MLT1K LTR MaLR 195 588 0 30 0 0 0 chrX 13344768 13344798 -163629342 + AT_rich Low_complexity Low_complexity 1 30 0 3911 22 0 4 chrX 13344798 13345255 -163628885 - L1PA3 LINE L1 -3 6152 5698 228 290 71 13 chrX 13345833 13345988 -163628152 + L1MC/D LINE L1 5755 5918 -1890 606 237 199 6 chrX 13346162 13346318 -163627822 - MER5A DNA MER1_type 0 189 4 2192 104 7 14 chrX 13346368 13346665 -163627475 + AluSx SINE Alu 1 295 -17 464 210 80 0 chrX 13346666 13346766 -163627374 - MER58B DNA MER1_type -31 310 203 190 299 28 84 chrX 13346834 13346875 -163627265 - MIR SINE MIR -16 246 204 1854 186 79 20 chrX 13346875 13347316 -163626824 + MLT1C LTR MaLR 1 467 0 190 299 28 84 chrX 13347316 13347381 -163626759 - MIR SINE MIR -58 204 146 964 237 147 100 chrX 13347381 13347536 -163626604 + MER50 LTR ERV1 1 147 -587 1906 98 9 89 chrX 13347536 13347752 -163626388 + AluSg SINE Alu 10 193 -117 2542 78 0 0 chrX 13347752 13348061 -163626079 + AluY SINE Alu 2 310 -1 1906 98 9 89 chrX 13348061 13348169 -163625971 + AluSg SINE Alu 193 308 -2 964 237 147 100 chrX 13348169 13348692 -163625448 + MER50 LTR ERV1 147 711 -23 256 273 0 15 chrX 13348692 13348758 -163625382 - MIR SINE MIR -112 150 86 212 248 147 64 chrX 13348775 13348884 -163625256 - L2 LINE L2 -1 3271 3154 239 287 61 61 chrX 13348916 13349031 -163625109 - MIR3 SINE MIR -82 126 12 1115 185 77 7 chrX 13349337 13349624 -163624516 - MER33 DNA MER1_type -17 307 1 374 298 7 28 chrX 13349626 13349767 -163624373 + L2 LINE L2 2503 2640 -674 881 215 100 51 chrX 13349768 13350079 -163624061 - MLT1A1 LTR MaLR -39 326 1 1769 159 37 62 chrX 13350165 13350554 -163623586 - LTR37A LTR ERV1 0 426 48 981 204 18 36 chrX 13350554 13350774 -163623366 - MER20 DNA MER1_type -3 216 1 1769 159 37 62 chrX 13350774 13350817 -163623323 - LTR37A LTR ERV1 -378 48 5 476 285 136 8 chrX 13350824 13351066 -163623074 + L2 LINE L2 2950 3222 -91 258 263 26 13 chrX 13352091 13352167 -163621973 + MIR SINE MIR 99 175 -87 1800 121 62 64 chrX 13352748 13353203 -163620937 + THE1C LTR MaLR 1 428 0 275 83 0 0 chrX 13353608 13353656 -163620484 + L1MA3 LINE L1 6258 6305 0 555 239 159 6 chrX 13353861 13354024 -163620116 - MER5A DNA MER1_type -1 188 1 7264 40 8 11 chrX 13354029 13354977 -163619163 + L1PA6 LINE L1 5207 6151 -3 707 226 34 34 chrX 13355005 13355182 -163618958 - MER5B DNA MER1_type -1 177 1 714 194 0 8 chrX 13355493 13355617 -163618523 - FLAM_A SINE Alu -7 126 4 893 148 49 12 chrX 13355681 13355843 -163618297 - MER5B DNA MER1_type -4 174 7 253 216 21 0 chrX 13355910 13355968 -163618172 + MER5B DNA MER1_type 126 178 0 322 266 78 0 chrX 13356036 13356164 -163617976 + L1ME4a LINE L1 5953 6090 -31 195 69 0 0 chrX 13356779 13356808 -163617332 + (TC)n Simple_repeat Simple_repeat 2 30 0 5167 252 38 18 chrX 13356920 13359411 -163614729 + L1M3f LINE L1 252 2794 -3534 774 115 0 0 chrX 13359408 13359530 -163614610 + L1MA8 LINE L1 5165 5286 -860 * 3531 172 23 15 chrX 13359534 13360285 -163613855 + L1MA8 LINE L1 5532 6288 -3 971 266 174 38 chrX 13360292 13361032 -163613108 + HAL1 LINE L1 1566 2406 -101 192 77 0 0 chrX 13361385 13361411 -163612729 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2347 56 0 3 chrX 13361424 13361710 -163612430 - AluY SINE Alu -26 285 1 291 28 0 0 chrX 13362620 13362656 -163611484 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1780 160 4 7 chrX 13362663 13362944 -163611196 - AluJb SINE Alu -32 280 1 721 174 36 7 chrX 13362978 13363116 -163611024 + MLT1A2 LTR MaLR 182 323 -51 21 0 0 0 chrX 13363116 13363137 -163611003 + AT_rich Low_complexity Low_complexity 1 21 0 660 191 20 0 chrX 13363137 13363284 -163610856 - L1MB2 LINE L1 -2 6169 6020 200 200 0 0 chrX 13363770 13363805 -163610335 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 192 179 0 0 chrX 13363807 13363846 -163610294 + GA-rich Low_complexity Low_complexity 4 42 0 936 305 35 35 chrX 13364223 13364626 -163609514 - LTR16A LTR ERVL -18 432 30 331 206 113 21 chrX 13365069 13365166 -163608974 + MIR SINE MIR 86 191 -71 21 0 0 0 chrX 13365239 13365260 -163608880 + AT_rich Low_complexity Low_complexity 1 21 0 338 270 162 60 chrX 13365260 13365445 -163608695 + MIR SINE MIR 59 262 0 182 211 53 0 chrX 13365452 13365490 -163608650 + MIR SINE MIR 223 262 0 1028 178 27 32 chrX 13365705 13365890 -163608250 + MER5A DNA MER1_type 1 184 -5 186 256 0 0 chrX 13366123 13366162 -163607978 + L2 LINE L2 3265 3303 -10 1991 144 30 62 chrX 13367617 13367864 -163606276 - MLT1B LTR MaLR 0 390 159 1675 116 8 21 chrX 13367864 13368106 -163606034 + AluJb SINE Alu 64 302 -10 1991 144 30 62 chrX 13368106 13368261 -163605879 - MLT1B LTR MaLR -231 159 1 1367 331 122 30 chrX 13368416 13369586 -163604554 - L2 LINE L2 -204 3068 1795 983 265 32 29 chrX 13369594 13369941 -163604199 - LTR16C LTR ERVL 0 491 144 295 73 0 0 chrX 13369991 13370032 -163604108 + MADE1 DNA Mariner 40 80 0 24 32 0 0 chrX 13370414 13370445 -163603695 + AT_rich Low_complexity Low_complexity 1 31 0 231 239 211 0 chrX 13371148 13371257 -163602883 - MLT1L LTR MaLR -25 590 459 504 295 137 24 chrX 13371289 13371618 -163602522 - MLT1L LTR MaLR -249 366 1 835 286 47 0 chrX 13372354 13372588 -163601552 + MIR SINE MIR 18 262 0 1120 266 101 43 chrX 13373371 13373905 -163600235 - MLT1L LTR MaLR -12 603 39 363 248 71 20 chrX 13373941 13374152 -163599988 + L2 LINE L2 3042 3272 0 543 248 0 0 chrX 13374784 13374897 -163599243 + FLAM_C SINE Alu 1 113 -30 656 65 71 12 chrX 13374899 13375067 -163599073 + (TA)n Simple_repeat Simple_repeat 2 179 0 254 32 0 0 chrX 13375071 13375102 -163599038 - HERVL LTR ERVL -2487 3167 3137 973 91 0 0 chrX 13375150 13375271 -163598869 + AluY SINE Alu 1 121 -190 528 68 75 7 chrX 13375306 13375453 -163598687 + (TA)n Simple_repeat Simple_repeat 1 157 0 1671 204 232 17 chrX 13376383 13376904 -163597236 + MER92B LTR ERV1 4 636 0 1053 143 68 13 chrX 13377249 13377486 -163596654 - MER33 DNA MER1_type -14 310 61 611 266 88 35 chrX 13377565 13378044 -163596096 - LTR33A LTR ERVL -28 495 1 21 0 0 0 chrX 13378169 13378190 -163595950 + AT_rich Low_complexity Low_complexity 1 21 0 1207 229 88 37 chrX 13378773 13379205 -163594935 - LTR16A1 LTR ERVL 0 457 4 954 185 11 6 chrX 13379803 13379981 -163594159 - MER63A DNA MER1_type -31 179 1 267 349 118 33 chrX 13380806 13380958 -163593182 - L2 LINE L2 -7 3265 3101 482 284 102 10 chrX 13381213 13381410 -163592730 - MIR SINE MIR -27 235 21 1719 185 66 46 chrX 13382076 13382529 -163591611 + L1ME3 LINE L1 5600 6061 -101 672 271 37 7 chrX 13382612 13382885 -163591255 + L1ME4a LINE L1 5602 5882 -239 5556 101 49 3 chrX 13382895 13384136 -163590004 + L1PA10 LINE L1 4464 5750 -418 1199 108 34 0 chrX 13384136 13384312 -163589828 + L1PA10 LINE L1 5985 6166 -2 207 314 0 0 chrX 13384661 13384747 -163589393 + A-rich Low_complexity Low_complexity 1 86 0 358 254 107 45 chrX 13385625 13385802 -163588338 + L1ME4a LINE L1 5931 6118 -3 23 0 0 0 chrX 13385991 13386014 -163588126 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 13387114 13387149 -163586991 + (TG)n Simple_repeat Simple_repeat 1 35 0 499 168 0 28 chrX 13387328 13387435 -163586705 - MLT1C LTR MaLR -2 465 362 847 269 4 18 chrX 13388375 13388602 -163585538 - MER58A DNA MER1_type 0 224 1 313 291 90 38 chrX 13388771 13389060 -163585080 - L1M4 LINE L1 -1768 4378 4075 963 223 117 31 chrX 13389484 13390124 -163584016 + LTR50 LTR ERVL 2 779 -16 231 146 0 0 chrX 13390293 13390334 -163583806 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1024 182 57 54 chrX 13390342 13390631 -163583509 + MER47B DNA MER2_type 26 418 0 204 97 0 0 chrX 13391550 13391581 -163582559 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 344 294 43 0 chrX 13392037 13392129 -163582011 + L2 LINE L2 3207 3302 -11 1952 106 66 17 chrX 13393125 13393474 -163580666 - THE1C LTR MaLR -2 373 8 383 274 77 46 chrX 13394002 13394345 -163579795 - L1MC/D LINE L1 -552 5593 5316 2457 96 8 11 chrX 13394345 13394701 -163579439 + THE1A LTR MaLR 1 355 0 383 274 77 46 chrX 13394701 13394742 -163579398 - L1MC/D LINE L1 -829 5316 5278 337 258 35 71 chrX 13394895 13395553 -163578587 - L1MC/D LINE L1 -872 1618 717 1400 264 120 2 chrX 13395593 13396058 -163578082 - LTR33 LTR ERVL 0 521 2 669 330 37 77 chrX 13396059 13396452 -163577688 - L1MC/D LINE L1 -5422 697 326 2183 98 0 0 chrX 13396452 13396728 -163577412 - AluSc SINE Alu -33 276 1 669 330 37 77 chrX 13396728 13396825 -163577315 - L1MC/D LINE L1 -5793 326 227 323 296 139 0 chrX 13396940 13397112 -163577028 + Charlie7 DNA MER1_type 122 317 -2295 1383 245 73 36 chrX 13397113 13397826 -163576314 + Charlie7 DNA MER1_type 1427 2165 -447 296 250 119 0 chrX 13397907 13397991 -163576149 - LTR16B LTR ERVL -370 94 1 232 283 28 19 chrX 13399078 13399184 -163574956 - MLT1J1 LTR MaLR 0 446 340 253 352 57 29 chrX 13399207 13399312 -163574828 + MIR SINE MIR 8 115 -147 903 200 43 85 chrX 13399312 13399430 -163574710 + L1MD3 LINE L1 7694 7815 -180 2286 84 47 12 chrX 13399430 13399773 -163574367 + THE1A LTR MaLR 1 355 0 12156 79 4 6 chrX 13399773 13401356 -163572784 + THE1A-int LTR MaLR 1 1580 0 2239 119 14 14 chrX 13401356 13401710 -163572430 + THE1A LTR MaLR 1 354 -1 903 200 43 85 chrX 13401710 13401894 -163572246 + L1MD3 LINE L1 7812 7985 -10 1673 196 13 48 chrX 13402227 13402605 -163571535 - MLT1A1 LTR MaLR 0 365 1 370 280 72 0 chrX 13403263 13403388 -163570752 + MIR SINE MIR 112 245 -17 346 289 103 51 chrX 13403464 13403620 -163570520 + MIR SINE MIR 20 183 -79 980 241 14 9 chrX 13404141 13404361 -163569779 + MER58A DNA MER1_type 4 224 0 42261 39 3 1 chrX 13404493 13410526 -163563614 + L1PA4 LINE L1 1 6048 -107 606 255 137 5 chrX 13411433 13411645 -163562495 + MIR SINE MIR 7 246 -16 198 143 0 0 chrX 13411739 13411774 -163562366 + (TG)n Simple_repeat Simple_repeat 1 35 0 874 183 24 6 chrX 13411836 13412005 -163562135 + MER5B DNA MER1_type 7 178 0 423 235 10 0 chrX 13412404 13412496 -163561644 - LTR16C LTR ERVL -3 488 396 818 189 0 123 chrX 13412496 13412740 -163561400 + MER20 DNA MER1_type 1 214 -5 887 263 35 61 chrX 13412745 13413057 -163561083 - LTR16C LTR ERVL -88 403 100 197 308 46 15 chrX 13413221 13413286 -163560854 + L2 LINE L2 2772 2838 -476 793 239 18 0 chrX 13413357 13413524 -163560616 - MER5B DNA MER1_type -2 176 7 229 339 78 26 chrX 13413531 13413646 -163560494 + L2 LINE L2 3149 3269 -3 247 303 45 11 chrX 13413697 13413786 -163560354 - MIR SINE MIR -6 256 165 221 0 0 33 chrX 13413802 13413832 -163560308 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 589 13 26 0 chrX 13415749 13415827 -163558313 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 2245 110 7 7 chrX 13415871 13416358 -163557782 + AluSg SINE Alu 1 310 0 2248 108 0 10 chrX 13416410 13416717 -163557423 - AluSg SINE Alu -4 306 3 2529 33 0 0 chrX 13417040 13417339 -163556801 - L1PA3 LINE L1 0 6155 5857 1832 219 50 44 chrX 13417825 13418044 -163556096 - L1ME3 LINE L1 -9 6153 5937 2376 105 0 0 chrX 13418044 13418348 -163555792 - AluSp SINE Alu -9 304 1 1832 219 50 44 chrX 13418348 13418694 -163555446 - L1ME3 LINE L1 -225 5937 5585 21 0 0 0 chrX 13419092 13419113 -163555027 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 13419313 13419338 -163554802 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 5306 136 27 36 chrX 13419694 13419835 -163554305 + L1MA7 LINE L1 5049 5190 -1101 2330 57 0 10 chrX 13419835 13420135 -163554005 + L1PA7 LINE L1 5858 6154 0 5306 136 27 36 chrX 13420135 13421202 -163552938 + L1MA7 LINE L1 5190 6248 -43 331 215 89 103 chrX 13421205 13421563 -163552577 - L1M1 LINE L1 -4218 2110 1758 3962 128 169 37 chrX 13421563 13422554 -163551586 - MER11B LTR ERVK -11 1225 1 5391 213 29 5 chrX 13422554 13424254 -163549886 - L1M1 LINE L1 -4065 1263 14 14547 118 28 6 chrX 13424265 13426583 -163547557 + Tigger1 DNA MER2_type 50 2417 -1 539 236 35 23 chrX 13426623 13426797 -163547343 + MER96B DNA MER1_type? 1 176 -241 1411 270 46 15 chrX 13426832 13427245 -163546895 + LTR40a LTR ERVL 90 519 0 241 312 127 21 chrX 13427388 13427577 -163546563 - L2 LINE L2 -495 2819 2611 433 314 144 10 chrX 13427629 13427823 -163546317 - MIR SINE MIR -33 229 10 3899 173 21 19 chrX 13428730 13429499 -163544641 - L1MB8 LINE L1 -5 6173 5404 980 145 17 11 chrX 13429501 13429680 -163544460 - MLT2D LTR ERVL -234 180 1 1684 210 41 21 chrX 13429748 13430167 -163543973 - MER63B DNA MER1_type -3 433 7 705 205 205 12 chrX 13430211 13430377 -163543763 - MIR SINE MIR -56 206 9 1711 173 27 18 chrX 13431446 13431781 -163542359 - MER58B DNA MER1_type -3 338 1 280 209 11 66 chrX 13432057 13432148 -163541992 - LTR16A1 LTR ERVL 0 457 372 3419 116 16 0 chrX 13432150 13432661 -163541479 + L1PA16 LINE L1 5640 6158 -8 207 0 0 0 chrX 13432672 13432695 -163541445 + (TAA)n Simple_repeat Simple_repeat 3 25 0 582 195 92 6 chrX 13432700 13432864 -163541276 - L1MC/D LINE L1 -426 5816 5639 281 185 19 0 chrX 13432918 13432972 -163541168 - L3 LINE CR1 -11 1566 1512 408 204 43 11 chrX 13434573 13434666 -163539474 + MIR SINE MIR 166 261 -1 823 272 31 97 chrX 13435892 13436347 -163537793 + MLT1L LTR MaLR 97 615 0 305 314 159 14 chrX 13436585 13436881 -163537259 + MLT1H LTR MaLR 12 350 -199 224 211 225 0 chrX 13436985 13437056 -163537084 + MIR SINE MIR 16 102 -160 204 373 27 0 chrX 13437040 13437115 -163537025 - MIR SINE MIR -185 77 1 * 328 299 113 48 chrX 13437703 13437994 -163536146 + L1MC4a LINE L1 5629 5938 -1870 1598 200 66 2 chrX 13438176 13438571 -163535569 - L1MD2 LINE L1 -10 6349 5930 295 276 41 41 chrX 13439423 13439521 -163534619 - L2 LINE L2 -6 3266 3169 496 296 107 35 chrX 13439736 13440147 -163533993 - L1ME4a LINE L1 -271 5850 5412 1034 137 6 48 chrX 13440267 13440435 -163533705 - AluJb SINE Alu -23 289 129 207 0 0 0 chrX 13441523 13441546 -163532594 + (A)n Simple_repeat Simple_repeat 1 23 0 764 169 38 47 chrX 13441666 13441879 -163532261 + L1MB8 LINE L1 5962 6172 -6 4338 128 21 53 chrX 13441935 13442405 -163531735 - L1MA7 LINE L1 0 6291 5858 2789 129 12 14 chrX 13442405 13442832 -163531308 - MSTB LTR MaLR 0 426 1 4338 128 21 53 chrX 13442832 13443210 -163530930 - L1MA7 LINE L1 -433 5858 5470 1405 240 9 0 chrX 13443378 13443720 -163530420 + MER99 DNA DNA 31 375 -453 1719 203 18 52 chrX 13443817 13444275 -163529865 + MER99 DNA DNA 386 827 -1 1128 156 16 0 chrX 13444280 13444466 -163529674 + MER5A DNA MER1_type 1 189 0 948 260 48 0 chrX 13444467 13444717 -163529423 + LTR16C LTR ERVL 221 482 -9 305 276 86 35 chrX 13444760 13444876 -163529264 + MIR SINE MIR 16 137 -71 545 213 98 27 chrX 13445189 13445372 -163528768 - MLT1J2 LTR MaLR -232 218 23 1859 234 45 10 chrX 13445798 13446311 -163527829 + L1ME3A LINE L1 5629 6159 -11 331 272 200 0 chrX 13446666 13446791 -163527349 - MIR SINE MIR -101 161 12 2452 180 52 103 chrX 13446793 13447207 -163526933 - MLT1E1 LTR MaLR 0 654 287 2166 144 6 18 chrX 13447207 13447548 -163526592 + MER1B DNA MER1_type 1 337 0 2452 180 52 103 chrX 13447548 13447822 -163526318 - MLT1E1 LTR MaLR -367 287 1 237 278 111 28 chrX 13448061 13448169 -163525971 + L2 LINE L2 2358 2474 -840 671 323 53 25 chrX 13448260 13448656 -163525484 + LTR16C LTR ERVL 85 491 0 191 386 76 14 chrX 13448735 13448945 -163525195 + L2 LINE L2 2581 2803 -511 471 254 111 8 chrX 13448950 13449076 -163525064 - L2 LINE L2 0 3272 3134 834 144 50 108 chrX 13449152 13449374 -163524766 - MER3 DNA MER1_type 0 209 1 226 359 7 28 chrX 13449569 13449711 -163524429 - L2 LINE L2 -428 2886 2748 322 331 65 7 chrX 13449771 13449925 -163524215 - L1MC4a LINE L1 -1877 5931 5769 607 329 46 68 chrX 13450259 13450605 -163523535 - L2 LINE L2 -637 2677 2342 500 155 194 0 chrX 13450605 13450708 -163523432 + FLAM_A SINE Alu 1 123 -10 607 329 46 68 chrX 13450708 13450817 -163523323 - L2 LINE L2 -972 2342 2232 30 0 0 0 chrX 13450868 13450898 -163523242 + AT_rich Low_complexity Low_complexity 1 30 0 5546 97 0 19 chrX 13450959 13451133 -163523007 + L1PB1 LINE L1 5318 5494 -657 2321 98 0 10 chrX 13451133 13451438 -163522702 + AluY SINE Alu 1 302 -9 5546 97 0 19 chrX 13451438 13451748 -163522392 + L1PB1 LINE L1 5494 5808 -343 351 113 0 0 chrX 13451748 13451801 -163522339 + (TA)n Simple_repeat Simple_repeat 1 53 0 5546 97 0 19 chrX 13451801 13452165 -163521975 + L1PB1 LINE L1 5808 6151 0 369 0 0 0 chrX 13452169 13452210 -163521930 + (CA)n Simple_repeat Simple_repeat 2 42 0 4353 144 28 3 chrX 13452210 13452555 -163521585 + L1PB3 LINE L1 5424 5759 -395 486 0 0 0 chrX 13452555 13452609 -163521531 + (TA)n Simple_repeat Simple_repeat 2 55 0 4353 144 28 3 chrX 13452609 13452960 -163521180 + L1PB3 LINE L1 5759 6153 -1 2229 123 0 0 chrX 13453858 13454151 -163519989 - AluSx SINE Alu -19 293 1 382 321 129 0 chrX 13454367 13454694 -163519446 - LTR16C LTR ERVL 0 491 114 1838 196 146 7 chrX 13454740 13455158 -163518982 - MLT1D LTR MaLR -29 476 1 2457 41 3 38 chrX 13455173 13455489 -163518651 - AluY SINE Alu -6 305 1 278 219 0 0 chrX 13456471 13456535 -163517605 + MLT1I LTR MaLR 70 133 -276 383 222 11 48 chrX 13456790 13456909 -163517231 + MLT1H LTR MaLR 432 533 -16 2209 119 0 3 chrX 13457283 13457593 -163516547 + AluSq SINE Alu 1 309 -4 266 191 73 15 chrX 13461489 13461557 -163512583 + MIR SINE MIR 127 198 -64 467 245 79 45 chrX 13461905 13462170 -163511970 + L1ME LINE L1 5025 5298 -848 424 291 68 49 chrX 13462175 13462628 -163511512 + L1ME LINE L1 5329 5790 -331 689 171 188 6 chrX 13462631 13462801 -163511339 - MER20 DNA MER1_type 0 219 19 1882 291 63 9 chrX 13464392 13464953 -163509187 + L2 LINE L2 2176 2815 -498 2590 45 0 3 chrX 13464953 13465264 -163508876 + AluY SINE Alu 1 310 -1 1882 291 63 9 chrX 13465264 13465643 -163508497 + L2 LINE L2 2815 3172 -141 281 209 86 48 chrX 13465980 13466085 -163508055 + LTR33A LTR ERVL 407 515 -8 227 284 202 9 chrX 13466154 13466263 -163507877 + LTR33 LTR ERVL 44 173 -348 3626 141 7 84 chrX 13466610 13467179 -163506961 - L1MA10 LINE L1 -40 6294 5791 492 99 0 0 chrX 13467179 13467250 -163506890 + (TA)n Simple_repeat Simple_repeat 2 72 0 3626 141 7 84 chrX 13467250 13467405 -163506735 - L1MA10 LINE L1 -543 5791 5626 336 248 139 57 chrX 13467408 13467638 -163506502 - HAL1 LINE L1 -1427 1080 832 198 246 18 18 chrX 13469221 13469278 -163504862 - L2 LINE L2 0 3272 3216 258 325 31 56 chrX 13469373 13469533 -163504607 - L2 LINE L2 -168 3104 2949 226 386 103 25 chrX 13469593 13469912 -163504228 - L2 LINE L2 -722 2592 2249 2483 117 36 61 chrX 13470273 13470768 -163503372 + L1MB8 LINE L1 5691 6173 -5 22 0 0 0 chrX 13471096 13471118 -163503022 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 13471387 13471410 -163502730 + AT_rich Low_complexity Low_complexity 1 23 0 421 267 31 56 chrX 13471419 13471580 -163502560 - MIR SINE MIR -27 235 79 239 0 0 0 chrX 13471921 13471954 -163502186 - L1PA2 LINE L1 -5 6150 6118 672 265 20 7 chrX 13472219 13472370 -163501770 - MER63A DNA MER1_type -9 201 49 1333 237 181 50 chrX 13473059 13473143 -163500997 + MLT1E LTR MaLR 1 73 -520 2110 92 0 4 chrX 13473143 13473487 -163500653 + AluSx SINE Alu 14 356 0 1333 237 181 50 chrX 13473487 13473925 -163500215 + MLT1E LTR MaLR 73 593 0 651 230 173 0 chrX 13474122 13474313 -163499827 - REP3 LTR ERV 0 562 339 393 121 30 0 chrX 13474314 13474380 -163499760 - LTR37A LTR ERV1 -259 167 100 524 291 111 5 chrX 13474451 13474650 -163499490 - MIR SINE MIR -41 221 2 953 109 32 18 chrX 13475152 13475315 -163498825 + MER20 DNA MER1_type 2 175 -44 2331 53 3 7 chrX 13475950 13476295 -163497845 + AluY SINE Alu 1 344 0 2047 178 21 5 chrX 13476789 13477166 -163496974 + MER82 DNA MER2_type 1 383 -270 440 332 28 90 chrX 13478807 13479096 -163495044 - L2 LINE L2 -3 3269 2999 253 240 10 21 chrX 13479544 13479640 -163494500 - HAL1 LINE L1 -143 2364 2270 746 221 102 22 chrX 13480046 13480272 -163493868 + MIR SINE MIR 19 262 0 519 307 58 33 chrX 13480463 13480792 -163493348 - HAL1 LINE L1 -621 1886 1550 272 245 0 0 chrX 13480820 13480873 -163493267 - MER94 DNA DNA -4 130 78 293 323 70 28 chrX 13480939 13481224 -163492916 - HAL1 LINE L1 -978 1529 1233 1741 130 68 52 chrX 13482049 13482418 -163491722 + THE1C LTR MaLR 1 375 0 942 225 121 70 chrX 13482723 13483096 -163491044 + LTR16A LTR ERVL 59 450 0 1888 213 44 80 chrX 13483398 13484050 -163490090 - MLT1E2 LTR MaLR 0 626 1 211 290 48 16 chrX 13484327 13484389 -163489751 - MER5A DNA MER1_type -65 124 61 500 300 54 61 chrX 13484449 13484762 -163489378 + L2 LINE L2 2913 3223 -90 644 281 25 46 chrX 13485325 13485521 -163488619 + LTR33 LTR ERVL 22 213 -308 857 331 41 25 chrX 13486636 13486999 -163487141 - LTR16C LTR ERVL -4 487 119 183 363 30 30 chrX 13487249 13487384 -163486756 - L2 LINE L2 -836 2478 2344 216 167 71 0 chrX 13488438 13488480 -163485660 - MIR3 SINE MIR -26 182 138 918 208 62 5 chrX 13488511 13488703 -163485437 - MER58A DNA MER1_type -16 208 6 619 211 312 12 chrX 13488716 13488963 -163485177 + MER5C DNA MER1_type 1 321 -3 402 289 62 7 chrX 13488967 13489109 -163485031 - MIR SINE MIR -62 146 11 3258 169 28 3 chrX 13490354 13490968 -163483172 + L1MB2 LINE L1 5543 6171 0 251 314 141 33 chrX 13491034 13491213 -163482927 + MIR3 SINE MIR 12 214 -48 285 135 0 0 chrX 13491237 13491289 -163482851 + (ATG)n Simple_repeat Simple_repeat 3 54 0 1309 209 46 61 chrX 13492025 13492370 -163481770 - MER58B DNA MER1_type 0 341 2 243 308 26 68 chrX 13492807 13492924 -163481216 + L2 LINE L2 3198 3309 -4 1370 217 117 16 chrX 13493339 13493708 -163480432 - L1ME LINE L1 -485 5679 5274 330 115 0 0 chrX 13494880 13494932 -163479208 + (CA)n Simple_repeat Simple_repeat 2 53 0 279 0 0 0 chrX 13496136 13496167 -163477973 + (CA)n Simple_repeat Simple_repeat 2 32 0 2108 163 11 3 chrX 13496178 13496539 -163477601 - MER47A DNA MER2_type -1 365 2 296 317 42 0 chrX 13496638 13496780 -163477360 - L1MC4a LINE L1 -1923 5885 5738 414 321 65 16 chrX 13496781 13496965 -163477175 - MLT1K LTR MaLR 0 588 396 1840 85 0 0 chrX 13497889 13498125 -163476015 - AluSc SINE Alu -3 306 71 2568 45 0 16 chrX 13498125 13498433 -163475707 - AluY SINE Alu -6 305 1 44 20 0 0 chrX 13498703 13498754 -163475386 + AT_rich Low_complexity Low_complexity 1 51 0 5050 158 34 62 chrX 13498823 13500015 -163474125 - L1PB3 LINE L1 -4 6150 4985 334 21 0 21 chrX 13500015 13500062 -163474078 - MADE1 DNA Mariner 0 80 35 5050 158 34 62 chrX 13500062 13500900 -163473240 - L1PB3 LINE L1 -1169 4985 4125 21 0 0 0 chrX 13502472 13502493 -163471647 + AT_rich Low_complexity Low_complexity 1 21 0 343 247 163 80 chrX 13502502 13502741 -163471399 + L1MC4a LINE L1 6180 6438 -1370 318 26 0 0 chrX 13502860 13502899 -163471241 + (TG)n Simple_repeat Simple_repeat 2 40 0 859 300 87 4 chrX 13502908 13503185 -163470955 + L1MC4 LINE L1 6713 7012 -1030 654 308 46 45 chrX 13503316 13503863 -163470277 + L1MC4 LINE L1 6923 7471 -571 353 211 0 0 chrX 13503884 13503960 -163470180 + L1MC5 LINE L1 7323 7398 -563 415 232 70 37 chrX 13504461 13504721 -163469419 + L1MC5 LINE L1 7604 7899 -143 64 14 0 0 chrX 13504878 13504949 -163469191 + AT_rich Low_complexity Low_complexity 1 71 0 640 268 26 83 chrX 13505476 13505861 -163468279 - L1MC5 LINE L1 -100 7861 7499 883 307 93 25 chrX 13505908 13506435 -163467705 - L1MC5 LINE L1 -1992 5816 5254 411 255 92 0 chrX 13507132 13507230 -163466910 - MIR SINE MIR -150 112 6 468 283 14 28 chrX 13507800 13507945 -163466195 - MIR SINE MIR -9 253 111 268 322 105 23 chrX 13508870 13509041 -163465099 - MLT1L LTR MaLR 0 615 431 259 300 33 33 chrX 13509245 13509365 -163464775 - MLT1L LTR MaLR -347 268 149 528 45 0 0 chrX 13509681 13509748 -163464392 + (TC)n Simple_repeat Simple_repeat 2 68 0 198 0 0 0 chrX 13510734 13510756 -163463384 + (CA)n Simple_repeat Simple_repeat 1 22 0 495 328 152 42 chrX 13510897 13511017 -163463123 - L3 LINE CR1 -42 1535 1430 294 29 0 0 chrX 13511017 13511052 -163463088 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 495 328 152 42 chrX 13511052 13511340 -163462800 - L3 LINE CR1 -147 1430 1082 322 306 47 72 chrX 13511579 13511772 -163462368 + MIR SINE MIR 20 207 -55 2579 58 0 3 chrX 13511936 13512248 -163461892 - AluY SINE Alu 0 311 1 2119 37 0 19 chrX 13512636 13512905 -163461235 - L1PA4 LINE L1 0 6155 5892 308 393 38 23 chrX 13513017 13513035 -163461105 - L1ME LINE L1 -314 5856 5840 1805 151 0 25 chrX 13513035 13513313 -163460827 - AluJo SINE Alu -39 273 3 308 393 38 23 chrX 13513313 13513559 -163460581 - L1ME LINE L1 -330 5840 5588 233 265 24 12 chrX 13513609 13513692 -163460448 - L1ME LINE L1 -652 5512 5429 1222 117 5 27 chrX 13513764 13513952 -163460188 - MLT1D LTR MaLR 0 505 322 605 146 219 0 chrX 13513950 13514073 -163460067 - MER20 DNA MER1_type -61 158 9 * 2497 113 17 3 chrX 13514751 13515096 -163459044 - THE1B LTR MaLR 0 364 15 7004 102 11 0 chrX 13515099 13516043 -163458097 - THE1B-int LTR MaLR 0 1580 627 4468 61 2 0 chrX 13516043 13516582 -163457558 - HERVL LTR ERVL -2431 3223 2684 1169 113 0 6 chrX 13516582 13516742 -163457398 - THE1B LTR MaLR -205 159 1 405 344 15 20 chrX 13518012 13518207 -163455933 + MIR SINE MIR 15 208 -54 348 24 0 0 chrX 13518277 13518318 -163455822 + (CA)n Simple_repeat Simple_repeat 2 42 0 989 226 19 14 chrX 13518542 13518750 -163455390 - MIR SINE MIR -45 217 9 342 0 0 0 chrX 13519373 13519411 -163454729 + (CA)n Simple_repeat Simple_repeat 2 39 0 961 232 5 31 chrX 13519689 13519913 -163454227 + MER20 DNA MER1_type 1 218 -1 276 290 49 91 chrX 13520838 13521176 -163452964 + L2 LINE L2 2675 3053 -260 2081 83 10 56 chrX 13521420 13521722 -163452418 - AluSc SINE Alu -21 288 1 854 321 62 25 chrX 13522051 13522406 -163451734 + MER90 LTR ERV1 201 568 -7 768 295 94 60 chrX 13523405 13523788 -163450352 + MLT1I LTR MaLR 1 396 -13 1052 164 53 43 chrX 13523844 13524051 -163450089 - MER3 DNA MER1_type 0 209 1 1347 170 18 0 chrX 13524207 13524425 -163449715 - Tigger3(Golem) DNA MER2_type -2 3027 2806 1936 149 0 0 chrX 13524651 13524960 -163449180 - AluSx SINE Alu 0 309 1 31 0 0 0 chrX 13524961 13524992 -163449148 + AT_rich Low_complexity Low_complexity 1 31 0 737 294 45 88 chrX 13525126 13525558 -163448582 - L1MDa LINE L1 -1318 5222 4773 207 0 0 0 chrX 13525558 13525581 -163448559 + (TTG)n Simple_repeat Simple_repeat 1 23 0 737 294 45 88 chrX 13525581 13525602 -163448538 - L1MDa LINE L1 -1767 4773 4753 2166 103 7 7 chrX 13525602 13525912 -163448228 - AluSg SINE Alu 0 310 1 737 294 45 88 chrX 13525912 13526182 -163447958 - L1MDa LINE L1 -1787 4753 4529 260 298 119 59 chrX 13526271 13526502 -163447638 - L1MDa LINE L1 -2217 4323 4107 345 62 0 0 chrX 13526502 13526550 -163447590 + (TG)n Simple_repeat Simple_repeat 1 48 0 260 298 119 59 chrX 13526550 13526803 -163447337 - L1MDa LINE L1 -2433 4107 3871 2540 68 3 10 chrX 13526803 13527114 -163447026 - AluSc SINE Alu 0 309 1 260 298 119 59 chrX 13527114 13528446 -163445694 - L1MDa LINE L1 -2669 3871 2390 30 45 0 0 chrX 13528488 13528532 -163445608 + AT_rich Low_complexity Low_complexity 1 44 0 219 69 0 0 chrX 13528753 13528782 -163445358 + (TC)n Simple_repeat Simple_repeat 1 29 0 246 275 25 83 chrX 13528840 13528960 -163445180 - HAL1 LINE L1 -850 1657 1545 280 347 130 14 chrX 13528980 13529196 -163444944 - MIR SINE MIR 0 262 22 1731 169 12 19 chrX 13529211 13529536 -163444604 - MER33 DNA MER1_type -1 323 1 553 273 54 44 chrX 13530268 13530473 -163443667 + MIR SINE MIR 1 207 -55 472 344 27 27 chrX 13530530 13530751 -163443389 + MIR SINE MIR 29 249 -13 276 317 37 49 chrX 13531903 13532067 -163442073 + MER5A DNA MER1_type 7 168 -21 993 290 63 33 chrX 13532199 13532596 -163441544 - MLT1J2 LTR MaLR -2 448 40 295 236 9 9 chrX 13533991 13534101 -163440039 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 863 266 82 0 chrX 13534135 13534368 -163439772 + MIR SINE MIR 3 254 -8 1123 119 0 0 chrX 13534369 13534547 -163439593 - AluSg/x SINE Alu 0 308 131 198 0 0 0 chrX 13534547 13534569 -163439571 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2162 93 7 0 chrX 13534569 13534848 -163439292 - AluSq SINE Alu -30 283 3 21 0 0 0 chrX 13534855 13534876 -163439264 + AT_rich Low_complexity Low_complexity 1 21 0 273 280 110 34 chrX 13534974 13535092 -163439048 + L2 LINE L2 3146 3272 0 210 293 136 36 chrX 13536221 13536361 -163437779 + L2 LINE L2 1795 1948 -1366 * 268 336 126 7 chrX 13536359 13536502 -163437638 - L2 LINE L2 -1076 2238 2079 326 355 95 35 chrX 13536517 13537064 -163437076 + L2 LINE L2 2152 2731 -583 187 288 137 65 chrX 13537453 13537592 -163436548 + L2 LINE L2 3161 3309 -4 788 33 0 0 chrX 13538345 13538436 -163435704 + L1MA1 LINE L1 6212 6302 0 28 0 0 0 chrX 13538436 13538464 -163435676 + AT_rich Low_complexity Low_complexity 1 28 0 1914 196 66 92 chrX 13538761 13539293 -163434847 + MLT2B1 LTR ERVL 3 520 0 395 250 0 62 chrX 13540135 13540263 -163433877 - LTR33A LTR ERVL 0 523 404 243 296 99 47 chrX 13541132 13541304 -163432836 + L2 LINE L2 1795 1975 -1339 * 302 260 60 0 chrX 13541269 13541369 -163432771 - L2 LINE L2 -1076 2238 2133 1032 214 48 14 chrX 13542375 13542585 -163431555 - MER20 DNA MER1_type -2 217 1 656 247 52 80 chrX 13543312 13543700 -163430440 - Charlie4 DNA MER1_type -147 1814 1438 1086 207 52 41 chrX 13543745 13543858 -163430282 - Charlie4 DNA MER1_type -1664 297 187 1767 170 0 23 chrX 13543858 13544164 -163429976 + AluJo SINE Alu 1 299 -13 1086 207 52 41 chrX 13544164 13544340 -163429800 - Charlie4 DNA MER1_type -1774 187 5 316 263 153 29 chrX 13544443 13544580 -163429560 + L2 LINE L2 2812 2965 -349 25 0 0 0 chrX 13545017 13545042 -163429098 + AT_rich Low_complexity Low_complexity 1 25 0 2135 96 0 0 chrX 13545051 13545322 -163428818 + AluSg SINE Alu 25 295 -15 292 232 119 65 chrX 13545617 13545886 -163428254 + L2 LINE L2 3072 3313 0 194 268 155 31 chrX 13546608 13546705 -163427435 - MER5B DNA MER1_type -69 109 1 4544 129 15 122 chrX 13546813 13548358 -163425782 - pTR5 LTR ERV1 0 2606 1524 643 118 0 0 chrX 13548506 13548591 -163425549 - AluJ/FLAM SINE Alu -226 86 2 1702 97 4 0 chrX 13548896 13549122 -163425018 + AluSg/x SINE Alu 72 298 -12 864 262 9 14 chrX 13549286 13549496 -163424644 - MER63A DNA MER1_type 0 210 2 23 0 0 0 chrX 13550356 13550379 -163423761 + AT_rich Low_complexity Low_complexity 1 23 0 2439 37 0 0 chrX 13550655 13550927 -163423213 + AluY SINE Alu 21 292 -19 1253 160 24 0 chrX 13551039 13551245 -163422895 - MER2 DNA MER2_type -134 211 1 319 284 45 97 chrX 13552210 13552251 -163421889 + L2 LINE L2 454 496 -2818 1077 243 14 0 chrX 13552251 13552469 -163421671 - MER58A DNA MER1_type -3 221 1 319 284 45 97 chrX 13552469 13552582 -163421558 + L2 LINE L2 496 600 -2714 850 56 0 0 chrX 13552588 13552695 -163421445 + AluSg/x SINE Alu 204 310 0 2923 91 5 2 chrX 13552718 13553114 -163421026 - L1MA3 LINE L1 -447 5858 5462 1153 277 173 38 chrX 13553138 13553763 -163420377 + L2 LINE L2 666 1374 -1940 813 246 6 0 chrX 13555899 13556074 -163418066 + MIR SINE MIR 79 254 -8 2283 95 0 0 chrX 13556152 13556448 -163417692 + AluSx SINE Alu 1 296 -16 2505 174 80 67 chrX 13556523 13557137 -163417003 + MLT1E3 LTR MaLR 3 624 0 288 253 187 11 chrX 13557622 13557713 -163416427 + MIR SINE MIR 46 152 -110 280 361 25 16 chrX 13558735 13558857 -163415283 + L2 LINE L2 3190 3312 -1 861 177 45 61 chrX 13559517 13559688 -163414452 + MER3 DNA MER1_type 11 180 -29 1151 175 32 23 chrX 13559688 13559905 -163414235 - MER20 DNA MER1_type 0 219 1 861 177 45 61 chrX 13559905 13559931 -163414209 + MER3 DNA MER1_type 180 205 -4 1098 160 91 0 chrX 13561314 13561501 -163412639 + MER20 DNA MER1_type 16 219 0 408 271 11 72 chrX 13561635 13561816 -163412324 - MER5B DNA MER1_type -2 176 7 2356 83 0 7 chrX 13562536 13562837 -163411303 - AluY SINE Alu -12 299 1 521 241 9 0 chrX 13563541 13563653 -163410487 + ORSL DNA AcHobo 6 118 -157 249 297 20 20 chrX 13566234 13566268 -163407872 - MIR SINE MIR -87 175 142 246 32 0 0 chrX 13566268 13566299 -163407841 + (TCC)n Simple_repeat Simple_repeat 3 33 0 249 297 20 20 chrX 13566299 13566365 -163407775 - MIR SINE MIR -119 143 75 2262 54 11 4 chrX 13566769 13567079 -163407061 - AluY SINE Alu 0 312 1 304 205 115 0 chrX 13567951 13568029 -163406111 - L2 LINE L2 -8 3305 3219 826 175 51 28 chrX 13568046 13568223 -163405917 - MER5A DNA MER1_type -8 181 1 297 303 134 7 chrX 13568509 13568651 -163405489 + MIR SINE MIR 49 208 -54 1501 179 54 56 chrX 13568875 13569012 -163405128 - LTR37B LTR ERV1 -2 466 330 2349 88 3 3 chrX 13569012 13569318 -163404822 + AluSx SINE Alu 1 306 -6 1501 179 54 56 chrX 13569318 13569371 -163404769 - LTR37B LTR ERV1 -138 330 278 2199 104 0 31 chrX 13569371 13569688 -163404452 + AluSx SINE Alu 2 308 -4 1501 179 54 56 chrX 13569688 13569887 -163404253 - LTR37B LTR ERV1 -190 278 77 606 277 95 0 chrX 13569931 13570079 -163404061 - MER96 DNA MER1_type? 0 175 14 330 176 59 15 chrX 13570389 13570457 -163403683 + MLT1H LTR MaLR 229 299 -250 1375 227 97 19 chrX 13571043 13571472 -163402668 + L1ME4a LINE L1 5511 5975 -195 1459 188 72 4 chrX 13572092 13572368 -163401772 + MER58B DNA MER1_type 3 297 -44 1034 67 0 0 chrX 13572368 13572502 -163401638 - AluY SINE Alu -3 308 175 344 113 0 19 chrX 13572502 13572555 -163401585 + MER58B DNA MER1_type 289 340 -1 2509 48 6 6 chrX 13572555 13572866 -163401274 + AluY SINE Alu 1 311 0 2082 106 21 0 chrX 13573188 13573505 -163400635 + AluSq SINE Alu 1 323 0 274 227 97 16 chrX 13573848 13573971 -163400169 + MLT1J LTR MaLR 68 239 -263 346 238 9 38 chrX 13574066 13574171 -163399969 + MLT1H LTR MaLR 425 526 -23 1324 175 31 18 chrX 13574607 13574893 -163399247 + Charlie4a DNA MER1_type 76 365 -143 2325 109 65 0 chrX 13575728 13576067 -163398073 + MER46B DNA MER2_type 1 236 0 2253 98 3 0 chrX 13576179 13576475 -163397665 + AluSx SINE Alu 3 299 -13 3837 142 38 16 chrX 13577837 13578472 -163395668 - L1MB8 LINE L1 -9 6169 5521 2159 128 0 0 chrX 13578701 13578989 -163395151 - AluSx SINE Alu -24 288 1 362 49 85 0 chrX 13579586 13579668 -163394472 + CT-rich Low_complexity Low_complexity 1 89 0 240 159 214 79 chrX 13579925 13580031 -163394109 + L1ME4a LINE L1 5978 6105 -16 1790 205 86 38 chrX 13580031 13580474 -163393666 - MLT1C LTR MaLR -3 464 1 240 159 214 79 chrX 13580474 13580493 -163393647 + L1ME4a LINE L1 6105 6120 -1 195 282 56 0 chrX 13580896 13580967 -163393173 - L2 LINE L2 -212 3060 2986 760 207 25 71 chrX 13581575 13581699 -163392441 + MER5A DNA MER1_type 1 114 -75 2262 97 0 17 chrX 13581699 13581861 -163392279 - AluSx SINE Alu -18 294 138 2390 87 3 0 chrX 13581861 13582160 -163391980 - AluSp SINE Alu -13 300 1 2262 97 0 17 chrX 13582160 13582296 -163391844 - AluSx SINE Alu -174 138 1 760 207 25 71 chrX 13582296 13582369 -163391771 + MER5A DNA MER1_type 114 189 0 2652 40 0 0 chrX 13582724 13583021 -163391119 + AluY SINE Alu 13 309 -2 1605 82 59 102 chrX 13583171 13583474 -163390666 + AluSx SINE Alu 1 290 -22 195 69 0 0 chrX 13583474 13583503 -163390637 + (TA)n Simple_repeat Simple_repeat 1 29 0 2391 91 0 3 chrX 13583519 13583827 -163390313 + AluSg SINE Alu 1 307 -3 2376 58 10 3 chrX 13584106 13584401 -163389739 + AluSx SINE Alu 1 297 -15 270 0 0 0 chrX 13585792 13585822 -163388318 + (CA)n Simple_repeat Simple_repeat 2 31 0 2324 75 3 7 chrX 13586472 13586766 -163387374 + AluSg SINE Alu 1 293 -17 464 268 88 76 chrX 13587111 13587134 -163387006 - L1MC4a LINE L1 -233 5929 5908 2008 149 0 0 chrX 13587134 13587429 -163386711 - AluSx SINE Alu -17 295 1 464 268 88 76 chrX 13587429 13587723 -163386417 - L1MC4a LINE L1 -254 5908 5605 1256 180 31 0 chrX 13587723 13587951 -163386189 + L1MD2 LINE L1 6107 6341 -18 464 268 88 76 chrX 13587951 13587975 -163386165 - L1MC4a LINE L1 -557 5605 5583 464 132 132 38 chrX 13588799 13588905 -163385235 - LTR38 LTR ERV1 0 556 441 1669 161 359 18 chrX 13588905 13589407 -163384733 + pTR5 LTR ERV1 1360 2032 -406 341 233 11 0 chrX 13589409 13589499 -163384641 + LTR30 LTR ERV1 553 643 -79 749 110 0 0 chrX 13589501 13589601 -163384539 + LTR12 LTR ERV1 615 714 0 2756 141 24 22 chrX 13589602 13590062 -163384078 - LTR38 LTR ERV1 -95 461 1 804 283 45 29 chrX 13590290 13590662 -163383478 + L1MC4 LINE L1 7490 7840 -202 392 220 182 8 chrX 13590933 13591065 -163383075 + MER96B DNA MER1_type? 263 417 0 249 180 0 0 chrX 13591175 13591225 -163382915 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 241 345 0 0 chrX 13591231 13591318 -163382822 - L1MC4 LINE L1 -1342 6700 6614 * 406 241 44 22 chrX 13591292 13591429 -163382711 + L1MC4 LINE L1 7902 8041 -1 2581 52 0 3 chrX 13592012 13592320 -163381820 - AluY SINE Alu -4 307 1 34 42 0 0 chrX 13592500 13592548 -163381592 + AT_rich Low_complexity Low_complexity 1 48 0 336 274 68 14 chrX 13592556 13592702 -163381438 + L1ME LINE L1 5633 5786 -335 557 277 161 8 chrX 13592921 13593170 -163380970 + L2 LINE L2 3027 3313 0 3953 161 25 5 chrX 13593345 13593952 -163380188 + LTR31 LTR ERV1 1 619 0 189 0 0 0 chrX 13594339 13594360 -163379780 + (A)n Simple_repeat Simple_repeat 1 21 0 23 33 0 0 chrX 13595302 13595332 -163378808 + AT_rich Low_complexity Low_complexity 1 30 0 732 182 29 6 chrX 13595448 13595618 -163378522 - MER33 DNA MER1_type -1 362 189 4143 149 30 1 chrX 13595621 13596285 -163377855 - L1MA5 LINE L1 -1 6299 5617 2198 102 12 6 chrX 13596285 13596608 -163377532 + L1MA5 LINE L1 5287 5611 -689 23 68 0 0 chrX 13596617 13596661 -163377479 + AT_rich Low_complexity Low_complexity 1 44 0 1889 116 0 4 chrX 13596664 13596923 -163377217 + AluSq SINE Alu 49 306 -7 766 188 14 0 chrX 13596930 13597068 -163377072 - MER33 DNA MER1_type -182 142 3 501 191 0 21 chrX 13597068 13597162 -163376978 + AluSp/q SINE Alu 211 302 -11 689 221 21 0 chrX 13597169 13597309 -163376831 - MER33 DNA MER1_type -181 143 1 929 151 8 155 chrX 13597318 13597389 -163376751 - MER20 DNA MER1_type -1 218 138 2355 103 0 0 chrX 13597389 13597699 -163376441 - AluSg SINE Alu 0 310 1 929 151 8 155 chrX 13597699 13597879 -163376261 - MER20 DNA MER1_type -81 138 4 284 272 25 0 chrX 13598034 13598115 -163376025 + GA-rich Low_complexity Low_complexity 3 85 0 209 132 0 19 chrX 13598494 13598547 -163375593 + (TA)n Simple_repeat Simple_repeat 1 52 0 372 133 0 0 chrX 13598670 13598730 -163375410 + (TA)n Simple_repeat Simple_repeat 1 60 0 2638 48 0 0 chrX 13599674 13599985 -163374155 + AluY SINE Alu 1 311 0 2216 113 7 0 chrX 13600840 13601142 -163372998 - AluSg1 SINE Alu -5 304 1 2360 60 0 3 chrX 13601425 13601743 -163372397 + AluSq SINE Alu 1 317 0 689 216 144 12 chrX 13601749 13601916 -163372224 + MER5A DNA MER1_type 1 189 0 2552 70 0 0 chrX 13602088 13602389 -163371751 + AluSc SINE Alu 1 301 -8 278 273 130 93 chrX 13602391 13602607 -163371533 + MIR SINE MIR 24 247 -15 2341 92 0 0 chrX 13603035 13603328 -163370812 - AluSg SINE Alu -17 293 1 2281 105 0 3 chrX 13604305 13604601 -163369539 + AluSq SINE Alu 1 295 -18 436 303 81 29 chrX 13604700 13605056 -163369084 + MLT1K LTR MaLR 1 422 -166 2223 95 0 0 chrX 13605445 13605759 -163368381 + AluSx SINE Alu 1 314 0 25 83 0 0 chrX 13607083 13607143 -163366997 + AT_rich Low_complexity Low_complexity 1 60 0 2049 112 0 20 chrX 13607150 13607445 -163366695 + AluSx SINE Alu 24 312 0 2176 116 7 0 chrX 13607458 13607761 -163366379 + AluSx SINE Alu 1 305 -7 902 249 65 26 chrX 13659108 13659449 -163314691 + MLT1C LTR MaLR 110 463 -4 2029 134 0 0 chrX 13660561 13660859 -163313281 - AluSx SINE Alu -14 298 1 792 206 0 29 chrX 13660880 13661050 -163313090 + MER58A DNA MER1_type 1 165 0 230 301 78 34 chrX 13661084 13661380 -163312760 - L1MEd LINE L1 -4914 1205 897 2227 70 0 14 chrX 13661422 13661736 -163312404 - AluY SINE Alu 0 310 1 186 368 0 0 chrX 13662813 13662870 -163311270 + L3 LINE CR1 1518 1574 -3 1794 169 16 22 chrX 13663100 13663381 -163310759 + AluJb SINE Alu 1 281 -31 1162 61 11 17 chrX 13663381 13663561 -163310579 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1794 169 16 22 chrX 13663561 13663593 -163310547 + AluJb SINE Alu 281 312 0 854 239 30 9 chrX 13664865 13665095 -163309045 + L1MB8 LINE L1 5433 5667 -499 288 174 58 9 chrX 13665074 13665171 -163308969 + L1MB8 LINE L1 5949 6010 -168 * 471 267 181 95 chrX 13665394 13665720 -163308420 + L2 LINE L2 2919 3272 0 227 341 49 12 chrX 13665881 13665963 -163308177 + L2 LINE L2 3101 3185 -87 258 211 367 11 chrX 13666106 13666196 -163307944 - MER5A DNA MER1_type -7 182 61 186 133 0 0 chrX 13666196 13666226 -163307914 + (T)n Simple_repeat Simple_repeat 1 30 0 324 211 0 0 chrX 13666523 13666580 -163307560 - MER5A DNA MER1_type -126 63 7 461 245 0 72 chrX 13667888 13668027 -163306113 - MER5B DNA MER1_type -11 167 39 280 224 0 0 chrX 13668027 13668085 -163306055 + L1MD3 LINE L1 7883 7940 -55 1967 185 94 53 chrX 13669557 13670120 -163304020 + L1MD2 LINE L1 5553 6138 -221 189 107 0 0 chrX 13670189 13670217 -163303923 + (T)n Simple_repeat Simple_repeat 1 28 0 364 343 66 6 chrX 13670217 13670383 -163303757 + MIR SINE MIR 78 253 -9 204 231 0 0 chrX 13670385 13670437 -163303703 + CT-rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chrX 13670553 13670581 -163303559 + AT_rich Low_complexity Low_complexity 1 28 0 273 151 0 0 chrX 13671115 13671168 -163302972 + (TG)n Simple_repeat Simple_repeat 1 53 0 292 171 38 124 chrX 13671803 13671908 -163302232 + MLT1H LTR MaLR 454 549 0 256 174 0 22 chrX 13672612 13672658 -163301482 + L2 LINE L2 3265 3309 -4 1107 272 73 8 chrX 13673021 13673392 -163300748 + MLT1I LTR MaLR 7 401 -8 479 294 23 55 chrX 13673880 13674098 -163300042 - L2 LINE L2 -2 3311 3101 725 213 101 19 chrX 13674118 13674325 -163299815 + MER58 DNA MER1_type 11 234 -107 501 282 155 82 chrX 13674325 13674776 -163299364 + L2 LINE L2 2830 3313 0 391 280 42 8 chrX 13676200 13676318 -163297822 - MER91C DNA MER1_type -15 125 4 27 73 0 0 chrX 13676915 13676970 -163297170 + AT_rich Low_complexity Low_complexity 1 55 0 2133 107 0 0 chrX 13677457 13677765 -163296375 + AluY SINE Alu 1 308 0 387 151 14 14 chrX 13678379 13678452 -163295688 - MER106B DNA MER1_type -986 73 1 1139 226 5 0 chrX 13681077 13681298 -163292842 - MER58A DNA MER1_type -1 223 2 291 260 0 106 chrX 13681811 13681934 -163292206 - L2 LINE L2 0 3313 3204 207 356 113 32 chrX 13682100 13682471 -163291669 - L2 LINE L2 -385 2929 2529 2499 66 0 25 chrX 13682495 13682815 -163291325 - AluSx SINE Alu 0 312 1 225 378 0 0 chrX 13682865 13682947 -163291193 - L2 LINE L2 -999 2315 2234 775 200 144 0 chrX 13683229 13683389 -163290751 - MER5A DNA MER1_type -3 186 4 267 239 0 42 chrX 13683668 13683739 -163290401 + MIR SINE MIR 16 83 -125 681 264 109 5 chrX 13683795 13683996 -163290144 + MIR SINE MIR 20 241 -21 308 277 48 0 chrX 13684029 13684112 -163290028 + MIR3 SINE MIR 113 199 -9 469 314 30 17 chrX 13686246 13686609 -163287531 + L1ME4a LINE L1 5461 5865 -256 363 244 67 37 chrX 13686660 13686795 -163287345 + L1ME4a LINE L1 5982 6120 -1 482 277 71 7 chrX 13687122 13687277 -163286863 + MLT2E LTR ERVL 158 322 -306 287 263 12 0 chrX 13687332 13687412 -163286728 + MLT2E LTR ERVL 460 540 -88 227 216 135 27 chrX 13687423 13687571 -163286569 + MLT1H LTR MaLR 228 391 -204 326 146 64 0 chrX 13687605 13687676 -163286464 + MLT1H LTR MaLR 477 552 -3 2424 145 8 0 chrX 13688868 13689240 -163284900 + MER1A DNA MER1_type 1 375 -154 1819 86 4 4 chrX 13689240 13689497 -163284643 + Charlie3 DNA MER1_type 2450 2706 -4 767 193 171 0 chrX 13690763 13690944 -163283196 - MER58A DNA MER1_type -10 214 3 478 300 33 7 chrX 13690971 13691121 -163283019 - MIR SINE MIR -58 204 51 260 174 159 0 chrX 13691572 13691641 -163282499 - MER116 DNA Mariner 0 80 1 2465 57 3 0 chrX 13692159 13692458 -163281682 - AluY SINE Alu -11 300 1 211 189 19 19 chrX 13693294 13693347 -163280793 - L2 LINE L2 0 3313 3261 1219 46 13 0 chrX 13693517 13693670 -163280470 + L1PA5 LINE L1 5994 6148 -6 193 300 33 11 chrX 13693863 13693953 -163280187 - L2 LINE L2 -276 3037 2946 369 0 0 0 chrX 13694088 13694129 -163280011 + (TG)n Simple_repeat Simple_repeat 1 41 0 1488 185 150 14 chrX 13694905 13695338 -163278802 + Charlie4a DNA MER1_type 17 508 0 746 226 92 26 chrX 13695348 13695543 -163278597 + MER63A DNA MER1_type 2 209 -1 2023 98 33 0 chrX 13696148 13696455 -163277685 - AluY SINE Alu 0 316 1 1858 176 10 22 chrX 13696462 13696775 -163277365 - AluJo SINE Alu -3 309 1 934 150 69 0 chrX 13697482 13697642 -163276498 + AluJo SINE Alu 33 203 -109 2670 78 17 35 chrX 13697799 13698221 -163275919 - L1MA1 LINE L1 0 6302 5889 2125 162 6 16 chrX 13749147 13749511 -163224629 + MLT1A1 LTR MaLR 6 365 0 3665 160 35 40 chrX 13749522 13750042 -163224098 - MLT-int LTR MaLR -1013 722 206 2064 148 3 0 chrX 13750042 13750353 -163223787 + AluJb SINE Alu 1 312 0 3665 160 35 40 chrX 13750353 13750555 -163223585 - MLT-int LTR MaLR -1529 206 4 197 255 20 0 chrX 13751413 13751464 -163222676 - MIR SINE MIR -116 146 95 211 111 22 22 chrX 13751480 13751525 -163222615 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 1589 306 33 17 chrX 13751697 13752465 -163221675 + L1M4 LINE L1 3437 4216 -1930 229 307 185 16 chrX 13752583 13752772 -163221368 + MLT1I LTR MaLR 80 300 -109 591 254 97 53 chrX 13752874 13753330 -163220810 + L1M4 LINE L1 4213 4688 -1458 312 315 236 41 chrX 13753464 13754071 -163220069 + L2 LINE L2 2323 3060 -212 1158 133 9 57 chrX 13754302 13754512 -163219628 - THE1B LTR MaLR 0 364 165 352 0 0 0 chrX 13755274 13755313 -163218827 + (TTG)n Simple_repeat Simple_repeat 1 180 0 1823 138 22 11 chrX 13755313 13755592 -163218548 - AluJb SINE Alu -30 282 4 400 213 0 0 chrX 13755707 13755782 -163218358 + FLAM SINE Alu 43 117 -16 244 304 115 58 chrX 13755972 13756163 -163217977 + L2 LINE L2 2748 2949 -365 1838 124 73 88 chrX 13756192 13756588 -163217552 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chrX 13756892 13756927 -163217213 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chrX 13757385 13757409 -163216731 + (TA)n Simple_repeat Simple_repeat 1 24 0 29 28 0 0 chrX 13758248 13758284 -163215856 + AT_rich Low_complexity Low_complexity 1 36 0 2017 114 27 30 chrX 13758820 13759118 -163215022 + AluJb SINE Alu 1 297 -15 294 85 0 0 chrX 13759141 13759188 -163214952 - MADE1 DNA Mariner -3 77 31 203 250 191 12 chrX 13759791 13759875 -163214265 - L3 LINE CR1 -80 1497 1399 182 229 0 0 chrX 13761274 13761309 -163212831 - L2 LINE L2 -17 3255 3221 207 244 0 0 chrX 13762578 13762656 -163211484 + GA-rich Low_complexity Low_complexity 3 80 0 203 182 0 23 chrX 13762758 13762802 -163211338 + A-rich Low_complexity Low_complexity 4 46 0 2127 113 7 0 chrX 13763018 13763318 -163210822 - AluSx SINE Alu -9 303 2 183 42 0 0 chrX 13763494 13763518 -163210622 + (CAA)n Simple_repeat Simple_repeat 1 24 0 186 321 170 0 chrX 13764809 13764915 -163209225 + L2 LINE L2 3148 3271 -1 478 205 253 6 chrX 13765871 13765918 -163208222 - L1MD3 LINE L1 -34 7961 7927 966 142 69 64 chrX 13765918 13766136 -163208004 + MER20 DNA MER1_type 1 219 0 478 205 253 6 chrX 13766136 13766254 -163207886 - L1MD3 LINE L1 -68 7927 7755 372 137 14 0 chrX 13766256 13766329 -163207811 - L1MC4a LINE L1 -260 7548 7475 183 409 9 36 chrX 13766565 13766675 -163207465 - MIR3 SINE MIR -90 118 12 369 212 103 20 chrX 13766919 13767065 -163207075 + L2 LINE L2 3091 3248 -65 2308 91 3 0 chrX 13767292 13767589 -163206551 - AluSg SINE Alu -12 298 1 22 35 0 0 chrX 13767592 13767621 -163206519 + AT_rich Low_complexity Low_complexity 1 29 0 772 227 89 10 chrX 13767630 13767833 -163206307 + MER20 DNA MER1_type 1 219 0 328 201 68 20 chrX 13767837 13767984 -163206156 - L1M2 LINE L1 -368 5786 5681 229 296 72 26 chrX 13768046 13768198 -163205942 - L1ME LINE L1 -596 5570 5412 507 200 67 67 chrX 13768388 13768553 -163205587 + MER20 DNA MER1_type 1 165 -54 204 125 0 0 chrX 13768557 13768589 -163205551 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 351 274 98 115 chrX 13768817 13769756 -163204384 - L1M2 LINE L1 -5389 1460 315 499 192 0 144 chrX 13771368 13771514 -163202626 + MER20 DNA MER1_type 1 125 -94 930 237 70 14 chrX 13771558 13771916 -163202224 - LTR37A LTR ERV1 -4 422 45 1871 149 10 32 chrX 13773000 13773309 -163200831 - AluJo SINE Alu -10 302 1 487 276 30 8 chrX 13773330 13773464 -163200676 - MIR SINE MIR -106 156 20 574 224 0 0 chrX 13774276 13774401 -163199739 + MER33 DNA MER1_type 6 130 -194 825 142 149 0 chrX 13774411 13774442 -163199698 + AluJo SINE Alu 85 110 -202 369 0 0 0 chrX 13774442 13774483 -163199657 + (CA)n Simple_repeat Simple_repeat 2 42 0 825 142 149 0 chrX 13774483 13774585 -163199555 + AluJo SINE Alu 110 238 -74 189 0 0 0 chrX 13774598 13774619 -163199521 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 541 189 98 0 chrX 13774631 13774784 -163199356 + MER33 DNA MER1_type 196 363 0 477 310 60 74 chrX 13775099 13775383 -163198757 + L2 LINE L2 2992 3271 -1 2203 179 22 43 chrX 13775573 13776064 -163198076 - MER66B LTR ERV1 -5 481 1 503 259 108 38 chrX 13777090 13777248 -163196892 + MER5A DNA MER1_type 16 184 -5 267 281 0 0 chrX 13778074 13778131 -163196009 + MIR SINE MIR 1 57 -205 399 205 36 0 chrX 13778332 13778415 -163195725 + MIR SINE MIR 177 262 0 533 320 117 5 chrX 13779166 13779372 -163194768 + MIR SINE MIR 34 262 0 472 154 45 0 chrX 13779536 13779646 -163194494 - L1MA9 LINE L1 -10 6302 6188 4074 117 69 2 chrX 13779659 13780713 -163193427 - L1MA8 LINE L1 -377 5914 4766 250 125 167 0 chrX 13780784 13780832 -163193308 + MER63 DNA MER1_type 27 708 -128 228 83 83 0 chrX 13780853 13780889 -163193251 + MER63 DNA MER1_type 669 707 -354 272 229 29 0 chrX 13780952 13781022 -163193118 + MER63 DNA MER1_type 990 1061 -1 2487 17 0 7 chrX 13781140 13781463 -163192677 - L1PA2 LINE L1 0 6155 5866 416 88 44 0 chrX 13781610 13781678 -163192462 + (ATGGTG)n Simple_repeat Simple_repeat 4 74 0 284 295 32 21 chrX 13781696 13781791 -163192349 + MIR3 SINE MIR 9 104 -104 192 373 20 29 chrX 13782173 13782275 -163191865 - L2 LINE L2 -20 3293 3193 226 322 61 19 chrX 13782626 13782760 -163191380 + MIR3 SINE MIR 8 149 -67 262 105 0 0 chrX 13782765 13782803 -163191337 + tRNA-Ser-TCA tRNA tRNA 1 38 -47 199 382 59 0 chrX 13782803 13782905 -163191235 + MIR SINE MIR 139 246 -16 374 286 71 18 chrX 13782935 13783047 -163191093 - MIR SINE MIR -143 119 2 2337 77 27 3 chrX 13783213 13783510 -163190630 - AluY SINE Alu -7 304 1 2239 85 0 0 chrX 13783520 13783823 -163190317 - AluSx SINE Alu 0 304 2 492 18 0 0 chrX 13785703 13785760 -163188380 + (TTCC)n Simple_repeat Simple_repeat 2 58 0 266 153 17 0 chrX 13785859 13785918 -163188222 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 357 293 43 0 chrX 13785952 13786092 -163188048 + (TCCA)n Simple_repeat Simple_repeat 1 146 0 777 244 131 47 chrX 13786113 13786540 -163187600 - L1MC4 LINE L1 -486 7556 7094 327 22 0 0 chrX 13786570 13786615 -163187525 + L1MA9 LINE L1 6262 6306 -6 332 0 0 0 chrX 13786690 13786731 -163187409 - L1PA6 LINE L1 -4 6150 6110 210 226 38 0 chrX 13787671 13787724 -163186416 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 2055 219 72 53 chrX 13789208 13789490 -163184650 + MLT1E LTR MaLR 1 276 -317 1149 111 162 0 chrX 13789490 13789688 -163184452 + MER30 DNA MER1_type 1 230 0 2055 219 72 53 chrX 13789688 13789985 -163184155 + MLT1E LTR MaLR 276 591 -2 622 287 71 19 chrX 13789986 13790254 -163183886 - LTR16A LTR ERVL -110 340 59 474 159 80 35 chrX 13790688 13790801 -163183339 - ORSL DNA AcHobo -157 118 1 3425 24 2 7 chrX 13791043 13791454 -163182686 - L1PA4 LINE L1 0 6155 5747 204 233 0 0 chrX 13791498 13791541 -163182599 - L2 LINE L2 -79 3193 3151 633 180 108 41 chrX 13791945 13792010 -163182130 + MER106A DNA MER1_type 30 89 -147 2601 141 21 2 chrX 13792010 13792430 -163181710 - MSTA LTR MaLR 0 428 1 633 180 108 41 chrX 13792430 13792558 -163181582 + MER106A DNA MER1_type 89 236 0 23 86 0 0 chrX 13793544 13793602 -163180538 + AT_rich Low_complexity Low_complexity 1 58 0 229 193 35 0 chrX 13794362 13794419 -163179721 + MER116 DNA Mariner 3 61 -19 238 347 44 48 chrX 13794853 13795101 -163179039 + L2 LINE L2 1824 2070 -1244 571 198 141 93 chrX 13795407 13795655 -163178485 + MER46C DNA MER2_type 5 264 -74 194 365 0 0 chrX 13795662 13795714 -163178426 + MIR SINE MIR 49 100 -108 228 318 35 0 chrX 13797460 13797545 -163176595 - MIR SINE MIR -95 167 80 2077 140 68 51 chrX 13797664 13798079 -163176061 + MSTB LTR MaLR 1 422 -4 2340 105 0 6 chrX 13798430 13798745 -163175395 - AluSq SINE Alu 0 313 1 454 270 74 7 chrX 13798878 13799026 -163175114 + L2 LINE L2 2700 2857 -457 427 382 77 0 chrX 13799345 13799591 -163174549 - L3b LINE CR1 -52 1531 1267 202 264 305 11 chrX 13799727 13799901 -163174239 + MIR SINE MIR 34 258 -4 2532 93 0 0 chrX 13799972 13800284 -163173856 - AluSx SINE Alu 0 312 1 933 177 141 0 chrX 13800501 13800693 -163173447 - MER20 DNA MER1_type 0 219 1 921 246 85 0 chrX 13801043 13801267 -163172873 + MIR SINE MIR 20 262 0 24 0 0 0 chrX 13803622 13803646 -163170494 + AT_rich Low_complexity Low_complexity 1 24 0 2209 104 0 0 chrX 13803949 13804238 -163169902 - AluSx SINE Alu -21 291 3 763 156 19 99 chrX 13804603 13804814 -163169326 - L2 LINE L2 -8 3305 3112 7074 55 10 25 chrX 13805700 13806731 -163167409 - L1PA8 LINE L1 0 6172 5150 2435 84 0 10 chrX 13806731 13807040 -163167100 + AluSq SINE Alu 1 306 -7 7074 55 10 25 chrX 13807040 13807376 -163166764 - L1PA8 LINE L1 -1022 5150 4811 2211 260 60 20 chrX 13807533 13808003 -163166137 + L2 LINE L2 2205 2704 -610 2095 135 0 6 chrX 13808003 13808314 -163165826 - AluJb SINE Alu -3 309 1 2211 260 60 20 chrX 13808314 13808427 -163165713 + L2 LINE L2 2704 2811 -503 4442 84 0 5 chrX 13808659 13809253 -163164887 - LTR10C LTR ERV1 0 591 1 246 363 113 12 chrX 13810693 13810861 -163163279 - L3 LINE CR1 -10 1567 1383 421 257 125 35 chrX 13810869 13811013 -163163127 - MIR SINE MIR -41 221 65 365 284 205 5 chrX 13811026 13811216 -163162924 - L3 LINE CR1 -287 1290 1063 1084 253 177 25 chrX 13811342 13811957 -163162183 + L2 LINE L2 2602 3304 -9 181 344 100 69 chrX 13812054 13812247 -163161893 - L3 LINE CR1 -1105 472 262 2480 51 0 3 chrX 13812247 13812542 -163161598 + AluY SINE Alu 1 294 -17 181 344 100 69 chrX 13812542 13812697 -163161443 - L3 LINE CR1 -1315 262 113 543 313 78 5 chrX 13813546 13813738 -163160402 + MIR SINE MIR 15 220 -42 205 328 0 0 chrX 13814008 13814066 -163160074 + L3 LINE CR1 1519 1576 -1 2490 73 0 0 chrX 13814335 13814638 -163159502 + AluY SINE Alu 1 303 -8 212 0 0 35 chrX 13815927 13815956 -163158184 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 686 146 36 0 chrX 13816408 13816518 -163157622 - AluJ SINE Alu -16 296 183 846 156 0 0 chrX 13816525 13816653 -163157487 - AluJ SINE Alu -174 128 1 23 33 0 0 chrX 13816998 13817028 -163157112 + AT_rich Low_complexity Low_complexity 1 30 0 706 264 52 0 chrX 13818499 13818673 -163155467 + MIR SINE MIR 5 187 -75 2019 152 3 3 chrX 13818725 13819027 -163155113 - AluJb SINE Alu -10 302 1 255 272 74 0 chrX 13819103 13819184 -163154956 + L2 LINE L2 2716 2802 -512 1139 204 52 23 chrX 13819217 13819717 -163154423 - MLT1E LTR MaLR 0 593 1 227 283 43 33 chrX 13819759 13819851 -163154289 + MIR SINE MIR 104 196 -66 33 43 0 0 chrX 13820119 13820166 -163153974 + AT_rich Low_complexity Low_complexity 1 47 0 680 259 0 12 chrX 13820166 13820332 -163153808 - MIR SINE MIR -3 259 96 183 42 0 0 chrX 13820918 13820942 -163153198 + (GA)n Simple_repeat Simple_repeat 2 25 0 352 302 48 0 chrX 13821416 13821542 -163152598 + MER94 DNA DNA 1 132 -2 982 158 82 0 chrX 13821603 13821786 -163152354 + MER20 DNA MER1_type 1 198 -21 937 212 18 40 chrX 13821783 13822005 -163152135 - MER58A DNA MER1_type -7 217 1 * 393 315 151 25 chrX 13822063 13822301 -163151839 - L3 LINE CR1 -857 720 453 402 241 0 46 chrX 13822320 13822407 -163151733 - MER5B DNA MER1_type -95 83 1 192 291 161 31 chrX 13822407 13822620 -163151520 - L2 LINE L2 -385 2929 2688 422 169 11 0 chrX 13822706 13822795 -163151345 + CT-rich Low_complexity Low_complexity 3 92 0 471 188 86 26 chrX 13822863 13822980 -163151160 - MER5C DNA MER1_type -200 124 1 230 383 87 15 chrX 13823008 13823331 -163150809 + L2 LINE L2 2765 3109 -163 24 0 0 0 chrX 13825238 13825262 -163148878 + AT_rich Low_complexity Low_complexity 1 24 0 315 312 65 0 chrX 13825509 13825602 -163148538 + MIR SINE MIR 21 119 -89 3343 192 12 12 chrX 13825608 13826347 -163147793 + L1MA9 LINE L1 5536 6274 -38 314 260 130 0 chrX 13826380 13826480 -163147660 + MIR SINE MIR 132 244 -18 201 254 134 0 chrX 13826889 13826956 -163147184 - MIR3 SINE MIR -3 205 130 1790 198 78 19 chrX 13827336 13827800 -163146340 + L1ME1 LINE L1 5299 5789 -395 530 249 75 6 chrX 13827805 13827978 -163146162 + L1ME1 LINE L1 5981 6165 -1 1036 287 78 112 chrX 13829055 13829839 -163144301 - L3 LINE CR1 -26 1551 795 2007 107 19 0 chrX 13829863 13830134 -163144006 - AluSx SINE Alu -18 294 19 4090 221 51 15 chrX 13831127 13832387 -163141753 + L1PA15-16 LINE L1 2731 4034 -2815 687 160 15 0 chrX 13832387 13832518 -163141622 + L1PA16 LINE L1 6025 6157 -9 2305 80 0 36 chrX 13832538 13832840 -163141300 + AluSg SINE Alu 1 291 -19 314 230 81 0 chrX 13833257 13833331 -163140809 - MIR SINE MIR -99 163 84 4105 87 10 3 chrX 13833343 13833942 -163140198 - L1MA2 LINE L1 -237 6067 5465 448 277 133 4 chrX 13833942 13834213 -163139927 - L1ME4a LINE L1 -281 5840 5535 2094 135 39 27 chrX 13834265 13834679 -163139461 - L1MA7 LINE L1 0 6291 5873 406 276 54 23 chrX 13835584 13835722 -163138418 + MIR SINE MIR 17 175 -66 1041 221 140 17 chrX 13835726 13836084 -163138056 - LTR16A1 LTR ERVL -1 456 55 1058 180 95 0 chrX 13836133 13836333 -163137807 - MER58A DNA MER1_type -3 221 3 1620 135 36 7 chrX 13836500 13836774 -163137366 + MER4C LTR ERV1 184 465 0 468 319 121 29 chrX 13836923 13837271 -163136869 + L2 LINE L2 1875 2254 -1060 221 358 75 8 chrX 13837567 13837701 -163136439 + L2 LINE L2 3171 3313 0 226 306 167 9 chrX 13838257 13838365 -163135775 - MIR3 SINE MIR -33 175 51 310 284 42 0 chrX 13838421 13838516 -163135624 - MIR SINE MIR -65 143 45 23 0 0 0 chrX 13839186 13839209 -163134931 + AT_rich Low_complexity Low_complexity 1 23 0 592 90 11 0 chrX 13839266 13839355 -163134785 + L1PA13 LINE L1 6061 6150 -13 391 283 97 0 chrX 13839513 13839626 -163134514 - L2 LINE L2 -1 3312 3189 267 342 108 0 chrX 13839857 13839968 -163134172 - L2 LINE L2 0 3272 3150 261 301 12 12 chrX 13841089 13841172 -163132968 + L2 LINE L2 3231 3313 0 206 227 0 15 chrX 13841178 13841244 -163132896 + GA-rich Low_complexity Low_complexity 4 68 0 425 296 36 106 chrX 13841647 13841948 -163132192 - L2 LINE L2 -1 3271 2992 34 0 0 0 chrX 13842158 13842192 -163131948 + AT_rich Low_complexity Low_complexity 1 34 0 2176 125 14 0 chrX 13842261 13842557 -163131583 + AluSx SINE Alu 1 300 -12 1768 127 100 21 chrX 13842887 13843226 -163130914 - MER47A DNA MER2_type 0 366 1 280 265 0 0 chrX 13844873 13844975 -163129165 - HAL1 LINE L1 -121 2386 2285 378 335 104 14 chrX 13844993 13845214 -163128926 - HAL1 LINE L1 -293 2214 1974 393 225 36 9 chrX 13845297 13845408 -163128732 - HAL1 LINE L1 -723 1784 1671 349 304 29 0 chrX 13845643 13845745 -163128395 - HAL1 LINE L1 -2402 105 1 562 252 161 0 chrX 13846240 13846395 -163127745 + MER5A DNA MER1_type 9 188 -1 936 141 11 54 chrX 13846404 13846589 -163127551 - MER5B DNA MER1_type 0 178 2 22 35 0 0 chrX 13847447 13847476 -163126664 + AT_rich Low_complexity Low_complexity 1 29 0 835 251 11 0 chrX 13847992 13848179 -163125961 + MER5A DNA MER1_type 1 189 0 1067 225 35 86 chrX 13848649 13849259 -163124881 - L2 LINE L2 -70 3243 2678 323 253 0 0 chrX 13849905 13849980 -163124160 - MIR SINE MIR 0 262 188 1289 269 42 3 chrX 13850065 13850422 -163123718 - LTR16C LTR ERVL -117 374 4 1294 99 0 0 chrX 13851605 13851767 -163122373 - AluSg/x SINE Alu -16 296 135 1887 148 11 0 chrX 13852541 13852847 -163121293 - AluJo SINE Alu 0 309 1 369 0 0 0 chrX 13853361 13853402 -163120738 + (CA)n Simple_repeat Simple_repeat 2 42 0 288 0 0 0 chrX 13853425 13853457 -163120683 + (TA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chrX 13853595 13853619 -163120521 + AT_rich Low_complexity Low_complexity 1 24 0 908 294 44 17 chrX 13853642 13854053 -163120087 - L1MC4a LINE L1 -1932 5876 5455 208 271 21 0 chrX 13855020 13855068 -163119072 + MIR SINE MIR 206 254 -8 1480 145 98 50 chrX 13856160 13856202 -163117938 + MER58B DNA MER1_type 9 48 -2372 2070 99 3 7 chrX 13856202 13856524 -163117616 - AluSx SINE Alu 0 321 1 1480 145 98 50 chrX 13856524 13856798 -163117342 + MER58B DNA MER1_type 48 341 0 316 133 50 0 chrX 13858414 13858474 -163115666 - MER67C LTR ERV1 -228 482 420 1906 195 24 7 chrX 13858736 13859161 -163114979 + LTR56 LTR ERV1 1 432 -13 23 33 0 0 chrX 13859247 13859277 -163114863 + AT_rich Low_complexity Low_complexity 1 30 0 502 323 32 0 chrX 13859407 13859562 -163114578 + MER5A DNA MER1_type 25 184 -5 21 0 0 0 chrX 13860096 13860117 -163114023 + AT_rich Low_complexity Low_complexity 1 21 0 442 310 63 52 chrX 13860126 13860604 -163113536 + L1MC4a LINE L1 4018 4489 -1657 2106 156 0 0 chrX 13860604 13860911 -163113229 + AluSx SINE Alu 1 307 -5 442 310 63 52 chrX 13860911 13861582 -163112558 + L1MC4a LINE L1 4489 5180 -966 885 207 104 28 chrX 13861664 13861915 -163112225 + L1MC4a LINE L1 5305 5574 -2234 399 196 0 54 chrX 13861923 13862035 -163112105 + L1MC4a LINE L1 5908 6013 -1795 205 300 100 0 chrX 13864038 13864108 -163110032 + MER91B DNA MER1_type 4 80 -110 271 320 29 48 chrX 13864456 13864559 -163109581 + L2 LINE L2 3152 3252 -20 24 0 0 0 chrX 13864559 13864583 -163109557 + AT_rich Low_complexity Low_complexity 1 24 0 687 271 116 14 chrX 13864619 13864826 -163109314 - MIR SINE MIR -28 234 7 243 299 179 52 chrX 13864944 13865287 -163108853 + L2 LINE L2 2716 3096 -176 398 71 0 0 chrX 13865288 13865344 -163108796 - MADE1 DNA Mariner 0 80 25 315 0 0 0 chrX 13865400 13865435 -163108705 + (TG)n Simple_repeat Simple_repeat 2 36 0 632 274 119 5 chrX 13865709 13865928 -163108212 + MIR SINE MIR 6 249 -13 641 285 92 18 chrX 13866958 13867186 -163106954 + MIR SINE MIR 10 254 -8 624 281 112 20 chrX 13867313 13867608 -163106532 - MARNA DNA Mariner -71 515 194 2110 133 0 0 chrX 13867632 13867925 -163106215 - AluSx SINE Alu -19 293 1 1125 178 62 0 chrX 13868377 13868585 -163105555 - MER58A DNA MER1_type -1 223 3 493 182 11 11 chrX 13868842 13868930 -163105210 - FLAM_A SINE Alu -21 121 34 369 237 126 65 chrX 13869497 13869869 -163104271 - L1ME4a LINE L1 -31 6090 5696 325 286 96 31 chrX 13869873 13870132 -163104008 + L1MC4a LINE L1 5647 5883 -238 4463 131 7 6 chrX 13870261 13870971 -163103169 + MER50 LTR ERV1 1 711 -23 253 301 124 35 chrX 13872050 13872163 -163101977 + L2 LINE L2 3134 3256 -16 22 0 0 0 chrX 13872491 13872513 -163101627 + AT_rich Low_complexity Low_complexity 1 22 0 1019 40 0 0 chrX 13872545 13872670 -163101470 + L1MA1 LINE L1 6178 6302 0 31 82 0 0 chrX 13874590 13874663 -163099477 + AT_rich Low_complexity Low_complexity 1 73 0 6162 45 11 2 chrX 13875517 13876317 -163097823 - L1PA7 LINE L1 -2 6152 5346 30 45 0 0 chrX 13876438 13876482 -163097658 + AT_rich Low_complexity Low_complexity 1 44 0 692 193 7 21 chrX 13877025 13877165 -163096975 - MER45A DNA AcHobo 0 178 41 835 261 37 14 chrX 13877341 13877556 -163096584 + MIR SINE MIR 6 225 -37 558 153 81 54 chrX 13877705 13877816 -163096324 + MER81 DNA DNA 1 114 0 661 125 17 0 chrX 13877866 13877986 -163096154 + GA-rich Low_complexity Low_complexity 1 122 0 1639 266 102 45 chrX 13878136 13878734 -163095406 + MER115 DNA AcHobo 61 692 -1 23 0 0 0 chrX 13879295 13879318 -163094822 + AT_rich Low_complexity Low_complexity 1 23 0 203 206 63 16 chrX 13879757 13879820 -163094320 + (CACAT)n Simple_repeat Simple_repeat 4 69 0 26 74 0 0 chrX 13880431 13880485 -163093655 + AT_rich Low_complexity Low_complexity 1 54 0 602 332 100 7 chrX 13880890 13881321 -163092819 + L1MC4a LINE L1 5459 5929 -1879 25 31 0 0 chrX 13881440 13881472 -163092668 + AT_rich Low_complexity Low_complexity 1 32 0 1704 137 0 10 chrX 13882623 13882916 -163091224 + L1PA13 LINE L1 5874 6163 0 25 75 0 0 chrX 13883382 13883435 -163090705 + AT_rich Low_complexity Low_complexity 1 53 0 195 270 88 88 chrX 13883623 13883760 -163090380 + MIR SINE MIR 47 183 -79 745 222 84 15 chrX 13883957 13884160 -163089980 - MIR SINE MIR -14 248 32 225 217 22 0 chrX 13884401 13884447 -163089693 - L2 LINE L2 -10 3262 3216 358 267 121 35 chrX 13885501 13885902 -163088238 + MLT1H1 LTR MaLR 108 549 0 362 276 89 16 chrX 13886227 13886350 -163087790 - MER5B DNA MER1_type 0 178 47 463 333 7 33 chrX 13886941 13887094 -163087046 + MIR3 SINE MIR 43 191 -17 1935 161 10 0 chrX 13887419 13887723 -163086417 - AluJb SINE Alu -5 307 1 229 288 0 17 chrX 13888623 13888682 -163085458 - L3 LINE CR1 -2 1575 1518 229 122 0 0 chrX 13888760 13888801 -163085339 - L1MA1 LINE L1 0 6302 6262 387 0 0 0 chrX 13888817 13888860 -163085280 + (TA)n Simple_repeat Simple_repeat 2 44 0 218 37 0 0 chrX 13888861 13888888 -163085252 + (TG)n Simple_repeat Simple_repeat 2 28 0 643 37 0 0 chrX 13888890 13888972 -163085168 - AluY SINE Alu -6 304 223 1233 89 6 0 chrX 13888972 13889151 -163084989 - L1MA1 LINE L1 -18 6284 6105 2524 76 0 0 chrX 13889222 13889523 -163084617 + AluSq SINE Alu 1 301 -12 630 121 0 0 chrX 13891677 13891776 -163082364 + L1MB2 LINE L1 6069 6167 -4 381 176 0 0 chrX 13893855 13893929 -163080211 + GA-rich Low_complexity Low_complexity 4 77 0 2016 226 65 29 chrX 13893929 13894202 -163079938 + L1ME3A LINE L1 5496 5758 -412 1963 203 77 29 chrX 13894202 13894684 -163079456 + MLT1D LTR MaLR 1 505 0 2016 226 65 29 chrX 13894684 13895057 -163079083 + L1ME3A LINE L1 5758 6165 -5 216 67 0 0 chrX 13895064 13895094 -163079046 + (TG)n Simple_repeat Simple_repeat 1 30 0 598 249 76 5 chrX 13895596 13895793 -163078347 - L1MB7 LINE L1 -47 6137 5927 1341 200 101 44 chrX 13895904 13896085 -163078055 - MLT1C LTR MaLR -7 460 291 2610 148 16 5 chrX 13896085 13896510 -163077630 + MSTB1 LTR MaLR 1 430 -2 1341 200 101 44 chrX 13896510 13896763 -163077377 - MLT1C LTR MaLR -176 291 1 23 0 0 0 chrX 13899347 13899370 -163074770 + AT_rich Low_complexity Low_complexity 1 23 0 892 235 34 133 chrX 13900421 13900776 -163073364 - L1MC4 LINE L1 0 8042 7756 2983 43 0 5 chrX 13900776 13901145 -163072995 - L1PA8 LINE L1 -2 6170 5804 892 235 34 133 chrX 13901145 13901325 -163072815 - L1MC4 LINE L1 -286 7756 7560 311 250 102 37 chrX 13901638 13901746 -163072394 + MIR SINE MIR 140 254 -8 495 250 38 25 chrX 13902145 13902305 -163071835 - MIR SINE MIR -55 207 46 250 250 14 0 chrX 13902747 13902819 -163071321 + MLT1L LTR MaLR 199 271 -344 495 228 53 53 chrX 13902838 13903027 -163071113 + MLT1J LTR MaLR 323 511 0 207 265 39 36 chrX 13903377 13903478 -163070662 - MIR SINE MIR -58 150 80 240 35 0 0 chrX 13903727 13903756 -163070384 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 325 296 23 30 chrX 13904073 13904205 -163069935 + MIR SINE MIR 124 254 -8 512 354 51 16 chrX 13904984 13905298 -163068842 - L3 LINE CR1 -45 1532 1208 234 309 69 26 chrX 13905323 13905503 -163068637 - MIR SINE MIR -9 253 9 872 145 0 0 chrX 13905590 13905714 -163068426 - FLAM_C SINE Alu -19 124 1 503 326 82 66 chrX 13905989 13906430 -163067710 + L2 LINE L2 2823 3270 -2 1039 173 5 34 chrX 13907181 13907389 -163066751 - MER20 DNA MER1_type -17 202 1 1267 126 165 54 chrX 13909909 13910170 -163063970 + AluJo SINE Alu 1 290 -12 23 0 0 0 chrX 13910247 13910270 -163063870 + AT_rich Low_complexity Low_complexity 1 23 0 286 316 140 24 chrX 13911699 13911863 -163062277 + MIR SINE MIR 59 240 -22 191 238 48 95 chrX 13912054 13912159 -163061981 - MIR SINE MIR -5 257 158 474 286 75 0 chrX 13912221 13912382 -163061758 - MIR SINE MIR -83 179 7 204 252 191 38 chrX 13912455 13912586 -163061554 - MIR3 SINE MIR -9 199 49 393 246 97 30 chrX 13913881 13914015 -163060125 + MIR SINE MIR 48 190 -72 397 243 230 14 chrX 13914382 13914530 -163059610 + MER5A DNA MER1_type 9 188 -1 394 250 29 64 chrX 13914934 13915106 -163059034 + MER69A DNA AcHobo 2 167 -10 344 336 0 22 chrX 13916122 13916256 -163057884 - L2 LINE L2 0 3313 3183 2627 107 3 8 chrX 13916668 13917034 -163057106 + THE1B LTR MaLR 1 364 0 684 93 0 0 chrX 13917483 13917580 -163056560 + (GA)n Simple_repeat Simple_repeat 2 98 0 1911 261 106 30 chrX 13917653 13918605 -163055535 + L2 LINE L2 2197 3214 -99 239 57 29 0 chrX 13919042 13919077 -163055063 + MER58A DNA MER1_type 49 84 -23 647 174 16 0 chrX 13919133 13919254 -163054886 + MER58A DNA MER1_type 99 221 -3 262 0 0 79 chrX 13919475 13919513 -163054627 - THE1C LTR MaLR -340 35 1 24 32 0 0 chrX 13919991 13920022 -163054118 + AT_rich Low_complexity Low_complexity 1 31 0 318 224 15 0 chrX 13920085 13920152 -163053988 + AluSp/q SINE Alu 235 302 -1 21 57 0 0 chrX 13921405 13921440 -163052700 + AT_rich Low_complexity Low_complexity 1 35 0 2797 223 23 7 chrX 13921595 13922209 -163051931 - MER82 DNA MER2_type -29 624 1 28 29 0 0 chrX 13922537 13922572 -163051568 + AT_rich Low_complexity Low_complexity 1 35 0 436 295 25 30 chrX 13922590 13922790 -163051350 - L1MC/D LINE L1 -2240 5568 5370 278 241 196 0 chrX 13922932 13923044 -163051096 + L3 LINE CR1 1279 1412 -165 26 30 0 0 chrX 13923152 13923185 -163050955 + AT_rich Low_complexity Low_complexity 1 33 0 202 311 379 0 chrX 13923309 13923441 -163050699 + MER5A DNA MER1_type 8 189 0 402 256 0 0 chrX 13923948 13924034 -163050106 - MER81 DNA DNA -26 88 3 410 283 186 41 chrX 13924440 13924709 -163049431 + L1ME LINE L1 3912 4219 -1927 2582 132 35 14 chrX 13925033 13925458 -163048682 + MER57B LTR ERV1 1 434 0 329 311 36 68 chrX 13925510 13925641 -163048499 + L1ME LINE L1 5601 5724 -397 2317 82 3 0 chrX 13925641 13925958 -163048182 + AluSg SINE Alu 1 310 0 329 311 36 68 chrX 13925958 13926048 -163048092 + L1ME LINE L1 5724 5815 -306 997 160 4 67 chrX 13926111 13926336 -163047804 - MER20 DNA MER1_type -5 214 4 1506 189 42 34 chrX 13926721 13927103 -163047037 - L1MB7 LINE L1 -72 6112 5728 184 275 0 0 chrX 13927305 13927345 -163046795 - L3 LINE CR1 -289 1288 1249 228 169 102 0 chrX 13928153 13928212 -163045928 + MER20 DNA MER1_type 1 65 -154 * 243 114 0 0 chrX 13928204 13928239 -163045901 - U2 snRNA snRNA -152 36 2 735 116 62 0 chrX 13928241 13928370 -163045770 + MER20 DNA MER1_type 41 177 -42 2558 77 0 3 chrX 13928594 13928907 -163045233 + AluSq SINE Alu 2 313 0 423 268 73 0 chrX 13929232 13929355 -163044785 - MIR SINE MIR -76 186 55 21 0 0 0 chrX 13930211 13930232 -163043908 + AT_rich Low_complexity Low_complexity 1 21 0 1368 201 109 6 chrX 13930362 13930711 -163043429 + L1MD3 LINE L1 7606 7990 -5 23 68 0 0 chrX 13930928 13930972 -163043168 + AT_rich Low_complexity Low_complexity 1 44 0 775 256 111 49 chrX 13932407 13932751 -163041389 - L2 LINE L2 0 3313 2949 249 335 91 11 chrX 13932833 13933009 -163041131 - MIR SINE MIR -48 214 25 198 0 0 0 chrX 13933467 13933489 -163040651 + (A)n Simple_repeat Simple_repeat 1 22 0 350 269 79 97 chrX 13935154 13935597 -163038543 - L1MC4a LINE L1 -53 6068 5634 383 281 121 25 chrX 13935603 13935802 -163038338 - L1MC4a LINE L1 -1128 5018 4801 487 288 48 0 chrX 13936527 13936652 -163037488 + L2 LINE L2 3180 3310 -3 22 0 0 0 chrX 13936674 13936696 -163037444 + AT_rich Low_complexity Low_complexity 1 22 0 993 165 0 100 chrX 13937528 13937682 -163036458 + MER3 DNA MER1_type 3 128 -81 2401 92 0 6 chrX 13937682 13937997 -163036143 - AluSq SINE Alu 0 313 1 993 165 0 100 chrX 13937997 13938072 -163036068 + MER3 DNA MER1_type 128 209 0 316 286 143 30 chrX 13938376 13938509 -163035631 + MER91A DNA MER1_type 47 194 -2 305 271 68 8 chrX 13938645 13938660 -163035480 - L1ME1 LINE L1 -5 6161 6147 3851 189 77 10 chrX 13938660 13939571 -163034569 - L1MA6 LINE L1 -12 6288 5317 557 204 7 27 chrX 13939581 13939728 -163034412 + L1MA6 LINE L1 5193 5336 -810 449 307 88 61 chrX 13939898 13940305 -163033835 + L2 LINE L2 1575 1992 -1322 1776 169 7 0 chrX 13940852 13941136 -163033004 - AluJo SINE Alu -25 287 2 260 296 38 53 chrX 13941150 13941282 -163032858 - MIR SINE MIR -105 157 28 1057 187 84 0 chrX 13941497 13941700 -163032440 - MER58A DNA MER1_type -3 221 2 435 357 5 10 chrX 13941783 13941982 -163032158 + L2 LINE L2 2880 3077 -195 880 270 121 14 chrX 13942187 13942543 -163031597 + LTR16C LTR ERVL 98 491 0 973 267 58 31 chrX 13942796 13943122 -163031018 + LTR16A LTR ERVL 53 387 -70 522 283 61 54 chrX 13944366 13944645 -163029495 - LTR16A1 LTR ERVL -2 455 175 207 88 0 0 chrX 13944989 13945023 -163029117 + (T)n Simple_repeat Simple_repeat 1 34 0 808 244 139 4 chrX 13945976 13946206 -163027934 + MIR SINE MIR 2 262 0 683 233 157 0 chrX 13946635 13946794 -163027346 - MER5A DNA MER1_type 0 189 6 254 235 0 106 chrX 13946890 13946975 -163027165 + MIR3 SINE MIR 85 160 -48 797 236 74 9 chrX 13947392 13947621 -163026519 + MIR SINE MIR 16 259 -3 282 316 13 0 chrX 13947795 13947871 -163026269 + L2 LINE L2 3196 3272 0 313 299 74 58 chrX 13949349 13949811 -163024329 + L1MC4a LINE L1 6058 6526 -1282 379 310 62 16 chrX 13950485 13950614 -163023526 - L2 LINE L2 -22 3250 3116 2382 61 0 35 chrX 13951880 13952193 -163021947 + AluY SINE Alu 1 302 -9 238 100 0 0 chrX 13952391 13952431 -163021709 + L1MB7 LINE L1 6135 6174 -10 214 289 40 0 chrX 13952644 13952720 -163021420 - L2 LINE L2 -9 3263 3185 1170 99 37 11 chrX 13952936 13953127 -163021013 - MER30 DNA MER1_type -34 196 1 2661 45 3 0 chrX 13953370 13953680 -163020460 + AluY SINE Alu 1 311 0 1645 63 0 9 chrX 13953950 13954171 -163019969 - L1PA6 LINE L1 -2 6152 5934 14396 106 22 56 chrX 13954978 13957481 -163016659 - Tigger1 DNA MER2_type 0 2418 1 343 329 78 17 chrX 13958757 13959170 -163014970 + L1MC/D LINE L1 5373 5810 -1998 210 37 0 0 chrX 13959487 13959514 -163014626 + (GA)n Simple_repeat Simple_repeat 2 28 0 393 250 201 14 chrX 13959677 13959821 -163014319 + MIR SINE MIR 20 190 -72 200 179 0 26 chrX 13959820 13959859 -163014281 + L2 LINE L2 3264 3301 -12 * 223 279 0 51 chrX 13959962 13960003 -163014137 - MIR SINE MIR -8 254 217 1481 154 59 0 chrX 13960003 13960309 -163013831 - MER33 DNA MER1_type 0 324 1 223 279 0 51 chrX 13960309 13960346 -163013794 - MIR SINE MIR -45 217 180 661 187 32 0 chrX 13960934 13961057 -163013083 - MIR SINE MIR -128 134 8 1525 225 25 83 chrX 13961470 13962035 -163012105 - LTR55 LTR ERV -16 532 1 523 318 36 5 chrX 13962211 13962403 -163011737 - MIR3 SINE MIR -8 200 3 2004 132 54 0 chrX 13964222 13964565 -163009575 - AluSx SINE Alu 0 359 1 560 131 16 55 chrX 13964999 13965182 -163008958 + CT-rich Low_complexity Low_complexity 4 179 0 658 99 57 36 chrX 13965219 13965907 -163008233 + CT-rich Low_complexity Low_complexity 1 701 0 1450 324 134 36 chrX 13965955 13967150 -163006990 + L2 LINE L2 1978 3313 0 315 221 15 0 chrX 13967225 13967293 -163006847 + MIR SINE MIR 191 259 -3 39 38 0 0 chrX 13967295 13967348 -163006792 + AT_rich Low_complexity Low_complexity 1 53 0 326 266 44 26 chrX 13968016 13968129 -163006011 + L1ME LINE L1 5653 5767 -354 2331 84 0 0 chrX 13969491 13969789 -163004351 - AluY SINE Alu -13 298 1 192 242 84 42 chrX 13970429 13970524 -163003616 - MIR3 SINE MIR -8 200 102 937 119 0 8 chrX 13970556 13970690 -163003450 + FLAM_C SINE Alu 1 133 -10 248 118 0 39 chrX 13970696 13970747 -163003393 + (GAAA)n Simple_repeat Simple_repeat 4 52 0 233 253 101 0 chrX 13971494 13971573 -163002567 + L1MC4 LINE L1 6614 6700 -1342 258 32 0 0 chrX 13971644 13971675 -163002465 + (TG)n Simple_repeat Simple_repeat 2 32 0 476 214 18 18 chrX 13971770 13971882 -163002258 - L2 LINE L2 -6 3307 3196 2492 224 56 8 chrX 13971985 13972647 -163001493 - L1ME3A LINE L1 -7 6163 5470 2467 71 0 3 chrX 13973655 13973965 -163000175 + AluSc SINE Alu 1 309 0 337 262 125 42 chrX 13973977 13974145 -162999995 - MIR3 SINE MIR -7 201 20 1797 165 0 20 chrX 13974354 13974651 -162999489 - AluJo SINE Alu -21 291 1 11437 147 33 16 chrX 13974664 13975737 -162998403 - L1MA4 LINE L1 -3 6297 5244 2295 108 0 0 chrX 13975737 13976033 -162998107 - AluSx SINE Alu -16 296 1 11437 147 33 16 chrX 13976033 13978103 -162996037 - L1MA4 LINE L1 -1056 5244 3101 925 174 0 13 chrX 13978508 13978663 -162995477 - FRAM SINE Alu -12 164 12 398 336 95 15 chrX 13978711 13978985 -162995155 - L1MC/D LINE L1 -2027 5781 5486 2204 89 7 0 chrX 13979134 13979448 -162994692 - AluSx SINE Alu 0 316 1 2438 81 0 0 chrX 13979456 13979751 -162994389 - AluSq SINE Alu -18 295 1 245 162 15 0 chrX 13979907 13979975 -162994165 + CT-rich Low_complexity Low_complexity 2 70 0 405 0 0 0 chrX 13979976 13980021 -162994119 + (CA)n Simple_repeat Simple_repeat 2 46 0 2521 181 24 18 chrX 13981340 13981842 -162992298 + MLT1D LTR MaLR 1 505 0 1268 203 195 48 chrX 13981983 13982120 -162992020 - MLT1E LTR MaLR 0 593 477 1815 149 3 57 chrX 13982120 13982435 -162991705 + AluSx SINE Alu 6 303 -9 1268 203 195 48 chrX 13982435 13982814 -162991326 - MLT1E LTR MaLR -116 477 1 316 245 135 39 chrX 13983275 13983557 -162990583 - L1MC/D LINE L1 -827 5319 5011 1519 120 19 0 chrX 13983594 13983861 -162990279 - L1MA8 LINE L1 -3 6288 6017 868 250 19 29 chrX 13984014 13984253 -162989887 - MIR SINE MIR -1 261 25 515 178 178 0 chrX 13984558 13984659 -162989481 + FLAM_C SINE Alu 1 119 -14 748 71 390 7 chrX 13985934 13986075 -162988065 + AluSg/x SINE Alu 101 295 -14 525 268 93 80 chrX 13986305 13986693 -162987447 + MLT1J LTR MaLR 117 509 -2 795 208 69 24 chrX 13987039 13987327 -162986813 + L1MC5 LINE L1 7631 7931 -30 2547 64 6 0 chrX 13987758 13988069 -162986071 + AluSp SINE Alu 1 313 0 309 265 50 36 chrX 13988183 13988402 -162985738 + L1ME4a LINE L1 5722 5943 -178 1596 173 50 91 chrX 13988590 13988672 -162985468 + Charlie4a DNA MER1_type 27 111 -1850 640 115 35 0 chrX 13988672 13988785 -162985355 - L1MB3 LINE L1 0 6183 6067 1596 173 50 91 chrX 13988785 13989198 -162984942 + Charlie4a DNA MER1_type 111 502 -6 2584 97 39 12 chrX 13989552 13989964 -162984176 + L1MA8 LINE L1 5864 6286 -5 195 333 71 0 chrX 13991232 13991331 -162982809 - MIR SINE MIR 0 262 157 1992 139 5 62 chrX 13991339 13991707 -162982433 + MER7A DNA MER2_type 1 345 -1 372 316 126 50 chrX 13991948 13992305 -162981835 - L3 LINE CR1 -14 1563 1180 601 223 128 0 chrX 13992327 13992475 -162981665 + MIR SINE MIR 15 181 -81 514 276 9 74 chrX 13993374 13993591 -162980549 + MIR SINE MIR 35 237 -25 1316 167 42 90 chrX 13993921 13994275 -162979865 - MER58B DNA MER1_type -4 337 1 222 260 0 0 chrX 13994812 13994862 -162979278 - L2 LINE L2 -994 2320 2271 2450 65 3 7 chrX 13995095 13995402 -162978738 + AluSp SINE Alu 1 306 -7 1934 132 9 11 chrX 14196024 14196372 -162777768 + L1MA2 LINE L1 5958 6304 0 336 180 171 72 chrX 14196410 14196521 -162777619 + FLAM_C SINE Alu 2 123 -10 240 222 16 16 chrX 14196528 14196591 -162777549 - MIR SINE MIR 0 262 200 914 156 49 126 chrX 14196670 14196879 -162777261 - MSTB1 LTR MaLR -187 245 58 2467 77 7 0 chrX 14196879 14197189 -162776951 - AluSp SINE Alu -1 312 1 914 156 49 126 chrX 14197189 14197242 -162776898 - MSTB1 LTR MaLR -374 58 3 1012 263 51 0 chrX 14197261 14197516 -162776624 + MER119 DNA MER1_type 5 272 -311 244 292 94 0 chrX 14198292 14198388 -162775752 - MIR3 SINE MIR -3 205 101 471 185 0 0 chrX 14199250 14199342 -162774798 + GA-rich Low_complexity Low_complexity 3 94 0 24 53 0 0 chrX 14199849 14199887 -162774253 + AT_rich Low_complexity Low_complexity 1 38 0 216 111 0 0 chrX 14200795 14200831 -162773309 + (TG)n Simple_repeat Simple_repeat 2 37 0 381 312 131 79 chrX 14201262 14201808 -162772332 + L2 LINE L2 2651 3231 -41 478 270 145 52 chrX 14201808 14202152 -162771988 - MLT1J2 LTR MaLR -4 446 71 469 222 142 40 chrX 14203296 14203521 -162770619 - MER112 DNA MER1_type 0 260 13 2259 98 3 16 chrX 14203968 14204275 -162769865 + AluSg SINE Alu 1 303 -7 317 322 47 23 chrX 14204353 14204524 -162769616 + L1M4 LINE L1 2111 2285 -3861 2272 72 7 0 chrX 14204524 14204815 -162769325 + AluY SINE Alu 1 293 -18 1831 175 70 34 chrX 14205241 14205687 -162768453 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chrX 14205824 14205845 -162768295 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 49 9 chrX 14205939 14206289 -162767851 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 14206361 14206389 -162767751 + AT_rich Low_complexity Low_complexity 1 28 0 2613 43 0 0 chrX 14206815 14207118 -162767022 - AluY SINE Alu -8 303 1 912 152 0 0 chrX 14207255 14207387 -162766753 + FLAM_C SINE Alu 1 132 -11 201 196 0 0 chrX 14207608 14207654 -162766486 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 246 359 33 0 chrX 14207827 14207919 -162766221 + LTR33A LTR ERVL 68 162 -361 260 109 0 22 chrX 14207939 14207985 -162766155 + (CAG)n Simple_repeat Simple_repeat 3 47 0 256 184 92 23 chrX 14208251 14208338 -162765802 + LTR33A LTR ERVL 431 523 0 197 420 65 0 chrX 14208566 14208704 -162765436 + MIR3 SINE MIR 30 176 -32 316 281 46 46 chrX 14208734 14208864 -162765276 + MIR SINE MIR 38 166 -76 22 56 0 0 chrX 14208908 14208944 -162765196 + AT_rich Low_complexity Low_complexity 1 36 0 1066 146 87 36 chrX 14208980 14209199 -162764941 + MER6 DNA MER2_type 2 231 -634 198 0 0 0 chrX 14209199 14209221 -162764919 + (GA)n Simple_repeat Simple_repeat 1 22 0 866 188 0 6 chrX 14209223 14209404 -162764736 + GA-rich Low_complexity Low_complexity 1 180 0 533 196 20 0 chrX 14209432 14209534 -162764606 + MER6 DNA MER2_type 241 344 -261 595 227 0 0 chrX 14209543 14209675 -162764465 + L1 LINE L1 4052 4183 -1963 4982 169 17 4 chrX 14209825 14211411 -162762729 + L1PA14 LINE L1 4549 6159 -2 2230 155 3 5 chrX 14211411 14211795 -162762345 + L1PB4 LINE L1 5769 6154 -2 1365 102 41 20 chrX 14211795 14212041 -162762099 + MER6 DNA MER2_type 614 864 -1 438 261 18 0 chrX 14212154 14212265 -162761875 + MER81 DNA DNA 1 113 -1 4059 121 3 28 chrX 14212532 14213178 -162760962 + L1PB3 LINE L1 5525 6154 0 207 0 0 0 chrX 14213183 14213206 -162760934 + (TAA)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chrX 14213800 14213822 -162760318 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 236 365 17 26 chrX 14214250 14214365 -162759775 - MIR3 SINE MIR -92 116 3 252 86 0 0 chrX 14215016 14215051 -162759089 + (TG)n Simple_repeat Simple_repeat 1 35 0 494 265 27 92 chrX 14215079 14215331 -162758809 - MIR SINE MIR -21 241 4 1768 207 54 23 chrX 14215646 14216127 -162758013 + L1ME1 LINE L1 5685 6334 0 386 335 104 16 chrX 14217572 14217879 -162756261 + L1ME4a LINE L1 5716 6049 -72 4837 147 17 11 chrX 14218440 14219312 -162754828 - L1MB7 LINE L1 -24 6160 5284 750 247 81 0 chrX 14219904 14220090 -162754050 - MIR SINE MIR -44 218 18 180 157 0 118 chrX 14220428 14220479 -162753661 + L2 LINE L2 3228 3272 0 3222 175 28 0 chrX 14220983 14221565 -162752575 - MER90 LTR ERV1 -11 603 6 523 185 0 0 chrX 14221668 14221760 -162752380 - FLAM SINE Alu -11 132 41 188 83 0 28 chrX 14221766 14221802 -162752338 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 4401 30 0 0 chrX 14221802 14222337 -162751803 - L1PA3 LINE L1 -24 6131 5597 2323 14 0 0 chrX 14222334 14222613 -162751527 + L1PA3 LINE L1 5328 5606 -549 * 11706 35 7 0 chrX 14222589 14224104 -162750036 + L1P LINE L1 2487 4012 -2134 30 59 0 0 chrX 14224513 14224564 -162749576 + AT_rich Low_complexity Low_complexity 1 51 0 627 296 20 20 chrX 14225007 14225311 -162748829 - L1MC/D LINE L1 -1995 5813 5510 230 296 185 22 chrX 14225639 14225774 -162748366 + L2 LINE L2 2601 2757 -557 281 374 61 5 chrX 14225798 14225996 -162748144 + L2 LINE L2 2904 3112 -160 238 253 84 0 chrX 14226024 14226119 -162748021 + (TATATG)n Simple_repeat Simple_repeat 2 104 0 366 91 0 0 chrX 14226771 14226826 -162747314 - L1MA9 LINE L1 0 6312 6258 426 20 0 0 chrX 14226827 14226878 -162747262 + (TG)n Simple_repeat Simple_repeat 1 51 0 3319 158 5 3 chrX 14226878 14227455 -162746685 - L1MA9 LINE L1 -161 6151 5574 495 268 85 32 chrX 14227571 14227817 -162746323 - MIR SINE MIR 0 262 4 522 287 112 60 chrX 14228068 14228336 -162745804 + MLT1I LTR MaLR 128 409 0 1982 133 75 26 chrX 14229166 14229513 -162744627 - THE1B LTR MaLR 0 364 1 684 277 148 26 chrX 14230451 14230541 -162743599 + MLT1L LTR MaLR 1 79 -536 1239 202 67 52 chrX 14230541 14231002 -162743138 + LTR37B LTR ERV1 1 468 0 684 277 148 26 chrX 14231002 14231377 -162742763 + MLT1L LTR MaLR 79 523 -92 13055 24 0 0 chrX 14231402 14233708 -162740432 - L1PA3 LINE L1 0 6155 3857 6978 31 0 0 chrX 14233709 14234599 -162739541 + L1PA3 LINE L1 2949 3838 -2308 2681 70 8 6 chrX 14234954 14235312 -162738828 + L1PB2 LINE L1 5775 6133 -18 25 0 0 0 chrX 14235315 14235340 -162738800 + AT_rich Low_complexity Low_complexity 1 25 0 208 319 22 55 chrX 14235767 14235858 -162738282 - MIR3 SINE MIR -14 194 107 6279 97 6 0 chrX 14235975 14237751 -162736389 - L1PA10 LINE L1 -2 6166 4385 485 183 189 29 chrX 14238483 14238634 -162735506 + MER5A DNA MER1_type 4 182 -7 212 333 14 14 chrX 14238635 14238707 -162735433 - MIR3 SINE MIR -42 166 95 259 287 129 0 chrX 14239225 14239326 -162734814 - MER102a DNA MER1_type -7 323 210 420 200 164 50 chrX 14239488 14239628 -162734512 - L2 LINE L2 0 3313 3158 1257 277 66 29 chrX 14240951 14241659 -162732481 - L2 LINE L2 0 3313 2580 245 261 31 0 chrX 14241737 14241802 -162732338 - MIR SINE MIR -72 190 124 268 359 32 7 chrX 14241839 14241980 -162732160 - MIR SINE MIR -45 163 15 2210 158 65 10 chrX 14242228 14242628 -162731512 + MSTB LTR MaLR 3 424 -2 23 0 0 0 chrX 14242639 14242662 -162731478 + AT_rich Low_complexity Low_complexity 1 23 0 1196 224 93 93 chrX 14243311 14244088 -162730052 + LTR41 LTR ERVL 1 795 0 189 74 0 0 chrX 14244257 14244284 -162729856 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 268 212 30 0 chrX 14244285 14244351 -162729789 + (CAGAGA)n Simple_repeat Simple_repeat 6 73 0 271 213 11 161 chrX 14244460 14244634 -162729506 - L2 LINE L2 -70 3243 3096 1399 180 86 53 chrX 14244637 14244998 -162729142 - MLT1D LTR MaLR -9 496 124 534 272 206 22 chrX 14245068 14245414 -162728726 - L2 LINE L2 -254 3059 2654 263 350 0 0 chrX 14245417 14245497 -162728643 + MER117 DNA MER1_type 40 119 -78 249 258 3 0 chrX 14246219 14246291 -162727849 - L2 LINE L2 -4 3309 3237 321 184 174 0 chrX 14246314 14246412 -162727728 - L2 LINE L2 -778 2536 2422 293 319 60 17 chrX 14246885 14247034 -162727106 - MIR SINE MIR -66 142 36 564 187 47 0 chrX 14247248 14247355 -162726785 + L2 LINE L2 3197 3308 -5 180 111 0 0 chrX 14247955 14247982 -162726158 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 643 260 41 0 chrX 14247982 14248178 -162725962 - L1ME3A LINE L1 -4 6166 5963 314 283 97 9 chrX 14248759 14248872 -162725268 + L1MC4 LINE L1 6604 6726 -1316 542 238 199 0 chrX 14250396 14250547 -162723593 - MER5A DNA MER1_type 0 189 9 470 274 27 0 chrX 14251036 14251182 -162722958 + Charlie8 DNA MER1_type 419 568 -1849 1053 168 22 58 chrX 14251187 14251413 -162722727 - MER20 DNA MER1_type -1 218 1 1124 267 4 0 chrX 14251422 14251669 -162722471 - MIR SINE MIR 0 262 15 359 257 18 0 chrX 14251675 14251784 -162722356 + Charlie8 DNA MER1_type 579 689 -1728 2108 106 3 0 chrX 14251827 14252146 -162721994 - AluSq SINE Alu 0 320 1 1181 283 97 49 chrX 14253462 14254278 -162719862 + Charlie8 DNA MER1_type 1529 2383 -34 1179 283 91 17 chrX 14255434 14255907 -162718233 - L2 LINE L2 -2 3311 2804 200 35 35 0 chrX 14255917 14255946 -162718194 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1564 231 116 24 chrX 14255950 14256274 -162717866 + MLT1H1 LTR MaLR 16 402 -153 2179 122 7 3 chrX 14256274 14256570 -162717570 + AluSx SINE Alu 1 297 -15 1564 231 116 24 chrX 14256570 14256738 -162717402 + MLT1H1 LTR MaLR 402 553 -2 280 136 15 15 chrX 14256755 14256821 -162717319 + L1PB1 LINE L1 6086 6151 0 249 68 23 0 chrX 14256839 14256883 -162717257 + L1MB4 LINE L1 6126 6170 -10 866 288 144 0 chrX 14256890 14257251 -162716889 - L2 LINE L2 -1198 2116 1704 275 359 28 0 chrX 14257825 14258042 -162716098 + L1ME LINE L1 4106 4328 -1818 351 0 0 0 chrX 14258145 14258184 -162715956 + (TG)n Simple_repeat Simple_repeat 2 40 0 411 327 75 52 chrX 14258280 14258720 -162715420 + L1ME LINE L1 4585 5034 -1112 373 156 44 0 chrX 14258798 14258888 -162715252 - L1MB3 LINE L1 -3 6180 6087 377 204 184 20 chrX 14258954 14259101 -162715039 + L1ME LINE L1 5257 5427 -2381 1047 236 116 75 chrX 14259124 14259632 -162714508 + MLT1H LTR MaLR 21 549 0 406 298 57 27 chrX 14259715 14259977 -162714163 + L1ME LINE L1 5536 5805 -316 2248 112 0 7 chrX 14260303 14260608 -162713532 + AluSx SINE Alu 5 307 -5 326 218 0 0 chrX 14260621 14260676 -162713464 - L2 LINE L2 -12 3260 3206 216 191 0 0 chrX 14260787 14260834 -162713306 + A-rich Low_complexity Low_complexity 1 47 0 1713 176 48 27 chrX 14261656 14262031 -162712109 + MLT1B LTR MaLR 1 383 -7 261 297 22 0 chrX 14262258 14262349 -162711791 - HERVL LTR ERVL -3840 1814 1722 390 316 23 60 chrX 14262608 14262874 -162711266 - HERVL LTR ERVL -4321 1443 1188 204 226 0 19 chrX 14262976 14263029 -162711111 + (TTG)n Simple_repeat Simple_repeat 2 53 0 352 234 23 0 chrX 14263189 14263317 -162710823 + L1M4 LINE L1 3368 3498 -2648 2190 157 68 19 chrX 14263328 14263811 -162710329 + L1MB8 LINE L1 5672 6178 0 34 42 0 0 chrX 14264130 14264178 -162709962 + AT_rich Low_complexity Low_complexity 1 48 0 339 298 90 27 chrX 14264396 14264806 -162709334 - L1MC4a LINE L1 -1959 5849 5414 321 318 48 0 chrX 14264847 14264973 -162709167 - L1MC4a LINE L1 -804 5342 5211 21 36 0 0 chrX 14265024 14265052 -162709088 + AT_rich Low_complexity Low_complexity 1 28 0 2026 121 31 3 chrX 14265059 14265348 -162708792 - AluJo SINE Alu -15 297 1 1685 184 19 19 chrX 14265581 14265891 -162708249 - AluJo SINE Alu -2 310 1 845 271 25 58 chrX 14266312 14266628 -162707512 + L2 LINE L2 2748 3045 -268 1510 191 83 14 chrX 14266628 14266989 -162707151 + MLT1B LTR MaLR 1 386 -4 845 271 25 58 chrX 14266989 14267107 -162707033 + L2 LINE L2 3045 3165 -148 3539 125 24 3 chrX 14267117 14267709 -162706431 - L1MA3 LINE L1 0 6305 5702 1371 101 0 5 chrX 14267709 14267908 -162706232 + L1MA3 LINE L1 5506 5703 -601 640 228 6 43 chrX 14267911 14268073 -162706067 + L2 LINE L2 3158 3313 0 480 309 38 58 chrX 14268326 14268669 -162705471 - LTR16C LTR ERVL -52 439 104 546 266 76 22 chrX 14269747 14269931 -162704209 - MIR SINE MIR -16 246 53 1388 224 151 18 chrX 14269972 14270476 -162703664 + MLT1G LTR MaLR 20 590 0 238 135 0 0 chrX 14270801 14270838 -162703302 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 280 308 34 87 chrX 14271717 14271983 -162702157 + MLT1J LTR MaLR 113 364 -147 564 219 148 6 chrX 14272250 14272409 -162701731 - MER5A DNA MER1_type 0 189 5 186 43 0 0 chrX 14272469 14272492 -162701648 + (CA)n Simple_repeat Simple_repeat 2 24 0 228 35 0 0 chrX 14272492 14272521 -162701619 + (GA)n Simple_repeat Simple_repeat 1 29 0 350 253 14 12 chrX 14272522 14272624 -162701516 + MER5A DNA MER1_type 67 162 -16 567 238 106 5 chrX 14275434 14275600 -162698540 + MER5A DNA MER1_type 5 189 0 4268 121 36 8 chrX 14276206 14276931 -162697209 - L1MA8 LINE L1 -5 6286 5542 193 300 0 17 chrX 14278746 14278806 -162695334 - L2 LINE L2 0 3272 3214 1965 134 48 31 chrX 14278927 14279285 -162694855 - THE1B LTR MaLR 0 364 1 873 303 40 18 chrX 14279449 14279856 -162694284 + LTR16C LTR ERVL 72 457 0 396 206 128 0 chrX 14280200 14280302 -162693838 - MER63 DNA MER1_type -94 742 2 26 30 0 0 chrX 14282421 14282454 -162691686 + AT_rich Low_complexity Low_complexity 1 33 0 270 311 134 18 chrX 14282712 14282876 -162691264 + MIR SINE MIR 75 257 -5 265 272 132 29 chrX 14282873 14283009 -162691131 + L2 LINE L2 2725 2874 -440 * 621 312 56 26 chrX 14283050 14283313 -162690827 + LTR16C LTR ERVL 3 273 -218 1826 240 59 12 chrX 14283313 14283804 -162690336 - LTR40a LTR ERVL 0 519 6 628 203 28 7 chrX 14283830 14283973 -162690167 + LTR16C LTR ERVL 296 441 -50 908 193 45 6 chrX 14284686 14284862 -162689278 + MER5A DNA MER1_type 7 189 0 563 241 9 0 chrX 14285748 14285860 -162688280 + MER81 DNA DNA 1 113 -1 343 263 50 56 chrX 14286209 14286388 -162687752 + MER5B DNA MER1_type 1 178 0 853 190 18 0 chrX 14286402 14286565 -162687575 - MER5B DNA MER1_type -6 172 7 320 298 152 6 chrX 14286584 14286742 -162687398 + MER5A DNA MER1_type 9 189 0 450 244 191 8 chrX 14288110 14288241 -162685899 + MER5A DNA MER1_type 35 189 0 462 310 13 19 chrX 14288249 14288404 -162685736 + MER5B DNA MER1_type 1 154 -24 2111 113 7 39 chrX 14288546 14288856 -162685284 + AluSx SINE Alu 1 300 -12 248 264 56 0 chrX 14288965 14289037 -162685103 + MIR SINE MIR 66 141 -67 1377 147 31 0 chrX 14289098 14289322 -162684818 + LTR32 LTR ERVL 14 244 -227 715 178 68 0 chrX 14289355 14289501 -162684639 + LTR32 LTR ERVL 316 471 0 320 225 0 50 chrX 14289514 14289594 -162684546 - MER81 DNA DNA -38 76 1 8546 176 73 20 chrX 14289884 14289949 -162684191 + L1MA2 LINE L1 13 73 -7492 2485 85 0 0 chrX 14289949 14290254 -162683886 - AluSc SINE Alu -4 305 1 8546 176 73 20 chrX 14290254 14291949 -162682191 + L1MA2 LINE L1 73 1865 -5700 * 11119 150 21 12 chrX 14291939 14292471 -162681669 + L1MA2 LINE L1 4446 4972 -2751 2266 92 0 3 chrX 14292471 14292764 -162681376 - AluY SINE Alu -19 292 1 11119 150 21 12 chrX 14292764 14294616 -162679524 + L1MA2 LINE L1 4972 6867 -856 2230 105 40 35 chrX 14294616 14294989 -162679151 + THE1C LTR MaLR 1 375 0 11119 150 21 12 chrX 14294989 14295837 -162678303 + L1MA2 LINE L1 6867 7706 -17 3220 71 0 7 chrX 14295838 14296273 -162677867 - MLT2A1 LTR ERVL -10 434 3 252 0 0 0 chrX 14296545 14296573 -162677567 + (TGG)n Simple_repeat Simple_repeat 2 29 0 571 283 75 97 chrX 14296805 14297518 -162676622 + L2 LINE L2 2602 3312 -1 343 22 43 0 chrX 14297576 14297622 -162676518 + LTR37A LTR ERV1 1 48 -378 1267 173 58 4 chrX 14297623 14297883 -162676257 - MER58B DNA MER1_type -2 339 66 2695 176 76 34 chrX 14297891 14298309 -162675831 - L1ME1 LINE L1 -141 6025 5626 2220 92 3 0 chrX 14298309 14298633 -162675507 - AluSx SINE Alu 0 325 1 2695 176 76 34 chrX 14298633 14299061 -162675079 - L1ME1 LINE L1 -540 5626 5140 1371 202 102 11 chrX 14299058 14299439 -162674701 + L1ME1 LINE L1 4734 5149 -997 * 350 198 50 20 chrX 14299432 14299533 -162674607 - L1MC/D LINE L1 -2073 5735 5632 * 683 200 113 6 chrX 14300509 14300629 -162673511 - MER5B DNA MER1_type -1 177 34 10527 28 0 0 chrX 14300629 14302636 -162671504 - L1PA4 LINE L1 0 6155 4139 683 200 113 6 chrX 14302636 14302675 -162671465 - MER5B DNA MER1_type -144 34 1 1425 206 17 78 chrX 14302698 14303111 -162671029 + MLT1B LTR MaLR 1 388 -2 23 0 0 0 chrX 14303713 14303736 -162670404 + AT_rich Low_complexity Low_complexity 1 23 0 2290 83 0 3 chrX 14303736 14304024 -162670116 - AluSx SINE Alu -21 291 5 186 167 0 0 chrX 14304148 14304184 -162669956 + (CA)n Simple_repeat Simple_repeat 2 37 0 1604 297 49 19 chrX 14304439 14305537 -162668603 - HERV16 LTR ERVL -2904 2092 982 2583 206 74 25 chrX 14305547 14306140 -162668000 + MLT1E1 LTR MaLR 5 626 -28 2999 38 8 0 chrX 14306143 14306510 -162667630 + L1PA3 LINE L1 5783 6152 -3 45 0 0 0 chrX 14306510 14306555 -162667585 + AT_rich Low_complexity Low_complexity 1 45 0 629 280 71 52 chrX 14306562 14306926 -162667214 - HERV16 LTR ERVL -4015 981 611 1416 246 47 40 chrX 14307478 14307929 -162666211 - LTR16A1 LTR ERVL 0 457 4 898 284 135 42 chrX 14307978 14308408 -162665732 + L2 LINE L2 2804 3273 -40 180 111 0 0 chrX 14308435 14308462 -162665678 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 1006 210 11 0 chrX 14308515 14308701 -162665439 - MER5A DNA MER1_type 0 189 2 347 219 203 21 chrX 14308969 14309206 -162664934 + L1ME4a LINE L1 5838 6117 -4 22 80 0 0 chrX 14309944 14309994 -162664146 + AT_rich Low_complexity Low_complexity 1 50 0 2474 65 16 3 chrX 14310091 14310398 -162663742 + AluY SINE Alu 1 311 0 9664 162 14 7 chrX 14310504 14310528 -162663612 - L1M1 LINE L1 -743 6822 6800 2169 126 32 24 chrX 14310528 14310900 -162663240 + THE1C LTR MaLR 1 375 0 10581 109 15 28 chrX 14310900 14312501 -162661639 + THE1C-int LTR MaLR 1 1580 0 2260 139 16 16 chrX 14312501 14312876 -162661264 + THE1C LTR MaLR 1 375 0 9664 162 14 7 chrX 14312876 14314919 -162659221 - L1M1 LINE L1 -764 6801 4843 3833 159 6 6 chrX 14314913 14315581 -162658559 - L1M1 LINE L1 -6886 679 12 * 1788 262 73 10 chrX 14315846 14316472 -162657668 + L1ME3 LINE L1 5489 6154 -8 183 314 121 0 chrX 14316583 14316707 -162657433 + L2 LINE L2 3163 3301 -12 409 112 0 61 chrX 14317074 14317172 -162656968 + (GGGA)n Simple_repeat Simple_repeat 2 93 0 516 77 0 0 chrX 14317853 14317931 -162656209 + (CA)n Simple_repeat Simple_repeat 2 79 0 1050 208 27 23 chrX 14319353 14319574 -162654566 - MER58A DNA MER1_type 0 224 3 494 318 80 19 chrX 14319581 14319845 -162654295 - L1MEd LINE L1 -4969 1150 871 252 269 28 9 chrX 14320843 14320951 -162653189 + L1 LINE L1 2248 2357 -3789 264 313 94 28 chrX 14320986 14321654 -162652486 + L1 LINE L1 2423 3134 -3012 2168 151 35 55 chrX 14321667 14322244 -162651896 - MLT2A2 LTR ERVL 0 554 1 1197 107 36 5 chrX 14322337 14322533 -162651607 - L1MA9 LINE L1 -278 6034 5833 906 123 0 0 chrX 14322526 14322672 -162651468 + L1MA9 LINE L1 6018 6163 -149 * 303 271 86 41 chrX 14322653 14322874 -162651266 - L1MC/D LINE L1 -2264 5544 5314 * 758 134 0 0 chrX 14323035 14323169 -162650971 + L1MA9 LINE L1 6169 6302 -10 270 241 62 47 chrX 14323264 14323443 -162650697 + L1 LINE L1 3547 3737 -2409 * 484 285 99 29 chrX 14323442 14323929 -162650211 + L1ME3A LINE L1 3875 4395 -1751 234 0 0 0 chrX 14323955 14323981 -162650159 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1061 210 37 14 chrX 14324026 14324240 -162649900 + MER58A DNA MER1_type 3 221 -3 301 239 0 0 chrX 14324379 14324450 -162649690 + MER58 DNA MER1_type 211 281 -60 1824 56 0 4 chrX 14324477 14324711 -162649429 + L1PA8 LINE L1 5940 6172 0 506 307 64 37 chrX 14324764 14325943 -162648197 + L1ME3A LINE L1 4616 5884 -286 499 215 44 7 chrX 14326854 14326989 -162647151 - L1ME3A LINE L1 -4 6560 6421 1801 224 51 62 chrX 14326990 14327242 -162646898 - L1ME3A LINE L1 -249 6315 6062 1616 123 76 47 chrX 14327242 14327584 -162646556 - L1MA7 LINE L1 -2 6289 5938 1801 224 51 62 chrX 14327584 14327979 -162646161 - L1ME3A LINE L1 -502 6062 5675 234 218 0 36 chrX 14327982 14328037 -162646103 + CT-rich Low_complexity Low_complexity 4 56 0 559 259 118 7 chrX 14328041 14328330 -162645810 - L1ME3A LINE L1 -875 5665 5345 301 267 0 0 chrX 14328332 14328392 -162645748 + polypyrimidine Low_complexity Low_complexity 1 60 0 755 83 0 68 chrX 14328393 14328585 -162645555 + (TTCCC)n Simple_repeat Simple_repeat 2 180 0 501 168 13 45 chrX 14328611 14328766 -162645374 + CT-rich Low_complexity Low_complexity 1 150 0 2373 245 74 28 chrX 14328777 14329939 -162644201 - L1ME3A LINE L1 -1210 5330 4116 1197 217 87 32 chrX 14329993 14330339 -162643801 + MLT1A1 LTR MaLR 1 365 0 4451 197 10 75 chrX 14330339 14331452 -162642688 + MLT1A1-int LTR MaLR 1 1040 -695 340 272 56 6 chrX 14331488 14331668 -162642472 - L1ME3A LINE L1 -2768 3772 3584 320 403 28 39 chrX 14331854 14332137 -162642003 - L1ME3A LINE L1 -6242 298 19 389 292 47 41 chrX 14332192 14332363 -162641777 - L1M4b LINE L1 -5329 1530 1359 247 302 0 0 chrX 14332919 14332982 -162641158 + L2 LINE L2 2686 2748 -566 252 389 47 27 chrX 14333228 14333377 -162640763 + L2 LINE L2 3116 3267 -5 2516 16 3 20 chrX 14334488 14334793 -162639347 + L1PA4 LINE L1 5856 6155 0 2208 165 78 41 chrX 14335255 14335739 -162638401 - MLT1D LTR MaLR -1 504 3 313 288 98 20 chrX 14335783 14335936 -162638204 + MIR SINE MIR 93 257 -5 441 284 60 50 chrX 14336918 14337136 -162637004 - L2 LINE L2 -2 3311 3092 * 1641 292 165 19 chrX 14337117 14338142 -162635998 - L2 LINE L2 -317 2955 1781 776 261 39 19 chrX 14338875 14339135 -162635005 + MLT1J2 LTR MaLR 41 305 -145 615 247 68 0 chrX 14339447 14339609 -162634531 + MIR SINE MIR 73 245 -17 203 262 24 0 chrX 14339765 14339807 -162634333 - L2 LINE L2 -9 3263 3221 191 250 0 0 chrX 14339955 14339999 -162634141 + MIR SINE MIR 147 190 -72 810 137 48 27 chrX 14341384 14341530 -162632610 + FRAM SINE Alu 1 146 -30 463 188 21 0 chrX 14341532 14341628 -162632512 - L1MD1 LINE L1 -5 6237 6140 624 161 0 99 chrX 14341632 14341793 -162632347 - MER53 DNA DNA 0 189 45 453 36 0 0 chrX 14341843 14341898 -162632242 + (TA)n Simple_repeat Simple_repeat 2 56 0 1474 180 16 3 chrX 14341905 14342210 -162631930 - AluY SINE Alu 0 311 3 28 61 0 0 chrX 14342308 14342357 -162631783 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chrX 14342431 14342456 -162631684 + AT_rich Low_complexity Low_complexity 1 25 0 29 28 0 0 chrX 14342492 14342528 -162631612 + AT_rich Low_complexity Low_complexity 1 36 0 4147 89 6 6 chrX 14342748 14343374 -162630766 + L1MA3 LINE L1 5523 6148 -157 2982 28 3 0 chrX 14343372 14343736 -162630404 - L1PA6 LINE L1 -212 5942 5578 * 1599 46 0 0 chrX 14343736 14343929 -162630211 + L1PA6 LINE L1 5955 6151 -3 1227 78 0 0 chrX 14343938 14344105 -162630035 + L1MA3 LINE L1 6139 6305 0 465 66 0 0 chrX 14344185 14344246 -162629894 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 210 250 62 0 chrX 14344248 14344296 -162629844 - L2 LINE L2 -12 3301 3251 * 812 258 8 68 chrX 14344264 14344311 -162629829 - MIR SINE MIR -25 237 189 2054 109 34 14 chrX 14344311 14344604 -162629536 + AluSx SINE Alu 1 299 -13 812 258 8 68 chrX 14344604 14344808 -162629332 - MIR SINE MIR -73 189 1 667 241 159 0 chrX 14345921 14346128 -162628012 - MIR SINE MIR -12 250 11 384 269 199 46 chrX 14346627 14346843 -162627297 + MIR SINE MIR 14 262 0 1111 216 88 35 chrX 14347325 14347755 -162626385 - L1MC5 LINE L1 -36 7925 7473 1012 206 72 33 chrX 14347771 14347859 -162626281 - L1MC5 LINE L1 -390 7571 7488 198 0 0 0 chrX 14347859 14347881 -162626259 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 336 64 0 0 chrX 14347880 14347927 -162626213 + (CA)n Simple_repeat Simple_repeat 1 47 0 1012 206 72 33 chrX 14347881 14348197 -162625943 - L1MC5 LINE L1 -473 7488 7199 496 337 154 37 chrX 14349067 14350034 -162624106 + L2 LINE L2 1762 2841 -473 595 322 4 37 chrX 14350888 14351130 -162623010 - MIR SINE MIR -8 254 21 496 240 95 14 chrX 14351177 14351424 -162622716 - LTR16C LTR ERVL 0 491 187 323 244 269 19 chrX 14352182 14352342 -162621798 - MIR SINE MIR -12 250 51 192 77 0 0 chrX 14352348 14352374 -162621766 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 374 269 106 44 chrX 14352637 14352797 -162621343 - MIR3 SINE MIR -28 180 11 241 312 0 13 chrX 14355351 14355428 -162618712 + GA-rich Low_complexity Low_complexity 3 78 0 720 265 83 13 chrX 14356518 14356748 -162617392 - MIR SINE MIR -2 260 15 277 260 0 26 chrX 14357332 14357409 -162616731 - MIR3 SINE MIR -11 197 123 31 0 0 0 chrX 14357420 14357451 -162616689 + AT_rich Low_complexity Low_complexity 1 31 0 193 347 0 0 chrX 14357514 14357563 -162616577 - L2 LINE L2 -88 3225 3177 434 298 132 29 chrX 14357575 14357817 -162616323 + MLT1K LTR MaLR 7 273 -315 236 239 33 22 chrX 14358318 14358410 -162615730 + (TTTA)n Simple_repeat Simple_repeat 2 94 0 468 0 0 0 chrX 14358588 14358640 -162615500 + (TA)n Simple_repeat Simple_repeat 1 52 0 250 371 84 34 chrX 14359197 14359434 -162614706 + L2 LINE L2 2831 3079 -193 1372 279 111 53 chrX 14359451 14360435 -162613705 - L1MEd LINE L1 -5075 1044 4 1561 237 151 8 chrX 14361865 14362354 -162611786 + MLT1G LTR MaLR 32 590 0 345 283 23 107 chrX 14362373 14362496 -162611644 + ERVL LTR ERVL 3764 3896 -1868 1790 180 7 7 chrX 14362496 14362801 -162611339 + AluJb SINE Alu 1 305 -7 345 283 23 107 chrX 14362801 14362985 -162611155 + ERVL LTR ERVL 3896 4045 -1719 401 177 13 0 chrX 14363223 14363302 -162610838 + MER116 DNA Mariner 1 80 0 1210 269 16 72 chrX 14364026 14364528 -162609612 - L2 LINE L2 -36 3277 2804 641 228 146 0 chrX 14364537 14364695 -162609445 + MER5A DNA MER1_type 9 189 0 717 237 65 16 chrX 14364695 14364940 -162609200 - L2 LINE L2 -504 2810 2554 232 365 153 15 chrX 14365088 14365362 -162608778 - L2 LINE L2 -157 3115 2804 189 324 44 0 chrX 14365639 14365707 -162608433 + MIR SINE MIR 75 145 -117 204 328 15 0 chrX 14365780 14365847 -162608293 + MER5A DNA MER1_type 122 189 0 330 289 45 27 chrX 14365847 14365970 -162608170 - MIR3 SINE MIR -48 160 36 631 325 43 5 chrX 14365994 14366203 -162607937 + MIR SINE MIR 46 262 0 608 237 106 32 chrX 14367765 14368131 -162606009 + MLT1H LTR MaLR 30 543 -6 198 276 81 35 chrX 14368272 14368359 -162605781 - L2 LINE L2 -7 3265 3175 523 301 110 34 chrX 14369984 14370193 -162603947 - MIR SINE MIR -31 231 7 254 185 56 0 chrX 14371590 14371644 -162602496 - L1MC5 LINE L1 -73 7888 7832 426 201 52 35 chrX 14371749 14371923 -162602217 - L1MC5 LINE L1 -182 7779 7603 1273 261 75 25 chrX 14371952 14372434 -162601706 - LTR33 LTR ERVL -15 506 1 287 271 57 43 chrX 14372434 14372644 -162601496 - L1MC5 LINE L1 -398 7563 7351 253 268 115 25 chrX 14372626 14372783 -162601357 - L1MC5 LINE L1 -522 7439 7269 * 740 214 31 6 chrX 14372898 14373057 -162601083 + MER5B DNA MER1_type 12 174 -4 185 194 56 0 chrX 14373899 14373935 -162600205 - MIR SINE MIR -11 251 214 397 147 0 0 chrX 14374714 14374782 -162599358 - L1MA9 LINE L1 -38 6274 6207 359 280 96 16 chrX 14374878 14375003 -162599137 + L2 LINE L2 3133 3267 -5 278 106 21 0 chrX 14375123 14375170 -162598970 + (TC)n Simple_repeat Simple_repeat 1 48 0 465 300 98 34 chrX 14375179 14375589 -162598551 + L2 LINE L2 1711 2146 -1168 1335 210 111 36 chrX 14375590 14375923 -162598217 - LTR16C LTR ERVL 0 491 134 503 211 125 8 chrX 14376062 14376190 -162597950 - MIR SINE MIR -30 232 90 381 297 81 14 chrX 14376202 14376350 -162597790 + L2 LINE L2 2201 2358 -956 189 171 0 0 chrX 14376620 14376655 -162597485 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 675 261 136 46 chrX 14376657 14377181 -162596959 - L1ME4a LINE L1 -214 5907 5337 335 320 64 35 chrX 14377265 14377468 -162596672 - L1ME4a LINE L1 -927 5219 5011 2916 9 0 0 chrX 14377547 14377865 -162596275 - AluYb8 SINE Alu 0 318 1 232 208 118 34 chrX 14377892 14378070 -162596070 - L1ME4a LINE L1 -1339 4807 4615 300 259 86 35 chrX 14378173 14378370 -162595770 - L1ME4a LINE L1 -1697 4449 4243 494 277 78 10 chrX 14378620 14378916 -162595224 - L1ME4a LINE L1 -2203 3943 3628 1262 336 102 23 chrX 14379417 14380164 -162593976 - L3 LINE CR1 -85 1492 687 4216 112 10 65 chrX 14380222 14381476 -162592664 + L1MA8 LINE L1 4853 6040 -251 2991 76 32 5 chrX 14381477 14381910 -162592230 + L1MA1 LINE L1 5858 6302 0 1424 119 24 4 chrX 14381958 14382210 -162591930 + L1MA8 LINE L1 6025 6281 -10 420 287 9 19 chrX 14382212 14382320 -162591820 - L3 LINE CR1 -926 651 545 188 321 74 0 chrX 14382413 14382494 -162591646 - L3 LINE CR1 -1066 511 425 1971 206 50 12 chrX 14382499 14382995 -162591145 + L1ME1 LINE L1 5647 6161 -5 459 402 60 22 chrX 14383017 14383383 -162590757 - L3 LINE CR1 -1158 419 40 904 304 179 22 chrX 14384372 14384908 -162589232 - L3 LINE CR1 -2 1575 956 181 326 92 31 chrX 14385744 14385842 -162588298 - MIR SINE MIR -157 105 2 4095 115 58 5 chrX 14386044 14386665 -162587475 + L1MA8 LINE L1 5584 6245 -46 376 77 31 0 chrX 14386665 14386730 -162587410 + (TA)n Simple_repeat Simple_repeat 1 67 0 4095 115 58 5 chrX 14386730 14386775 -162587365 + L1MA8 LINE L1 6245 6286 -5 546 259 29 79 chrX 14386787 14387065 -162587075 + MLT1J LTR MaLR 95 358 -153 2083 144 6 40 chrX 14387269 14387617 -162586523 - MER1B DNA MER1_type 0 337 2 201 253 55 75 chrX 14388849 14388995 -162585145 + L2 LINE L2 1640 1782 -1532 677 134 22 30 chrX 14389016 14389150 -162584990 + L1MD1 LINE L1 6110 6242 0 4222 33 12 12 chrX 14389153 14389669 -162584471 + L1PA3 LINE L1 5640 6155 0 27 0 0 0 chrX 14389669 14389696 -162584444 + AT_rich Low_complexity Low_complexity 1 27 0 288 281 146 28 chrX 14390208 14390386 -162583754 + MIR SINE MIR 24 222 -40 1207 156 9 45 chrX 14391474 14391698 -162582442 + AluJb SINE Alu 83 298 -14 1383 166 108 25 chrX 14391867 14392181 -162581959 + MER58B DNA MER1_type 1 340 -1 640 188 56 80 chrX 14392186 14392399 -162581741 + MER3 DNA MER1_type 1 208 -1 * 1014 147 0 6 chrX 14392237 14392407 -162581733 - MER3 DNA MER1_type 0 209 41 752 207 24 12 chrX 14392551 14392715 -162581425 - LTR16C LTR ERVL -2 489 324 2798 44 11 0 chrX 14392715 14393127 -162581013 - L1P2 LINE L1 -723 5431 5016 2845 22 0 0 chrX 14393127 14393437 -162580703 + L1PA5 LINE L1 5840 6151 -3 821 246 66 6 chrX 14393443 14393626 -162580514 - LTR16C LTR ERVL -143 348 155 2341 85 14 0 chrX 14394366 14394661 -162579479 + AluSg SINE Alu 1 299 -11 2282 147 70 0 chrX 14395156 14395497 -162578643 - MLT1A1 LTR MaLR 0 365 1 1542 216 50 76 chrX 14395516 14395974 -162578166 - MLT1J1 LTR MaLR 0 446 1 1651 188 3 16 chrX 14397358 14397661 -162576479 + AluJb SINE Alu 1 299 -13 540 286 24 36 chrX 14398344 14398512 -162575628 - MER5A DNA MER1_type -3 186 21 509 275 21 7 chrX 14398847 14398989 -162575151 + MIR SINE MIR 116 259 -3 338 380 40 0 chrX 14399033 14399259 -162574881 - L2 LINE L2 -623 2691 2457 5126 178 17 3 chrX 14399563 14400862 -162573278 + L1MB7 LINE L1 4859 6176 -8 525 157 22 0 chrX 14400869 14401003 -162573137 + G-rich Low_complexity Low_complexity 5 141 0 262 267 17 17 chrX 14401005 14401121 -162573019 + GA-rich Low_complexity Low_complexity 5 120 0 376 196 56 19 chrX 14401199 14401306 -162572834 + MIR3 SINE MIR 59 169 -39 21 0 0 0 chrX 14402344 14402365 -162571775 + AT_rich Low_complexity Low_complexity 1 21 0 345 327 0 0 chrX 14402518 14402622 -162571518 + L2 LINE L2 2683 2786 -528 258 356 56 56 chrX 14402748 14403015 -162571125 + L2 LINE L2 2949 3215 -57 1488 217 40 29 chrX 14403156 14403534 -162570606 - L1ME3A LINE L1 -112 6058 5677 1755 130 12 0 chrX 14404776 14405029 -162569111 - L1PB3 LINE L1 -2 6152 5897 688 303 108 12 chrX 14405350 14405693 -162568447 - LTR16C LTR ERVL -43 448 73 397 284 47 9 chrX 14406203 14406419 -162567721 - L2 LINE L2 -26 3287 2974 700 218 2 3 chrX 14406835 14406984 -162567156 - L1ME1 LINE L1 -5 6161 6031 214 267 133 0 chrX 14407567 14407657 -162566483 - MIR SINE MIR -10 252 151 22 35 0 0 chrX 14407984 14408013 -162566127 + AT_rich Low_complexity Low_complexity 1 29 0 2432 90 3 0 chrX 14408057 14408369 -162565771 + AluSp SINE Alu 1 313 0 583 187 179 0 chrX 14408557 14408691 -162565449 + MER5A DNA MER1_type 26 183 -6 408 206 65 11 chrX 14408930 14409022 -162565118 + L2 LINE L2 3187 3283 -30 2263 142 35 16 chrX 14409025 14409398 -162564742 - MSTB LTR MaLR 0 426 47 314 135 0 0 chrX 14409398 14409450 -162564690 + MADE1 DNA Mariner 1 52 -28 817 227 57 43 chrX 14409662 14409944 -162564196 - MLT1J1 LTR MaLR -19 427 142 2361 214 114 2 chrX 14409945 14410427 -162563713 + MLT1F LTR MaLR 1 536 -6 447 241 90 23 chrX 14410432 14410565 -162563575 - MLT1J2 LTR MaLR -308 142 1 193 29 59 0 chrX 14412706 14412740 -162561400 + (TA)n Simple_repeat Simple_repeat 1 36 0 2135 117 30 0 chrX 14413890 14414188 -162559952 - AluSx SINE Alu -5 307 1 790 179 231 0 chrX 14414374 14414586 -162559554 - MER5C DNA MER1_type -63 261 1 504 241 41 67 chrX 14415112 14415307 -162558833 + MIR SINE MIR 19 208 -54 25 0 0 0 chrX 14416801 14416826 -162557314 + AT_rich Low_complexity Low_complexity 1 25 0 426 217 0 0 chrX 14416900 14416983 -162557157 + LTR16A LTR ERVL 366 448 -2 726 282 138 52 chrX 14418392 14418849 -162555291 - MLT1H LTR MaLR -16 533 38 431 323 180 6 chrX 14418916 14419083 -162555057 + MER91A DNA MER1_type 1 196 0 331 280 211 32 chrX 14419463 14419742 -162554398 + MLT1J1 LTR MaLR 115 443 -3 531 324 14 0 chrX 14419769 14419917 -162554223 - L2 LINE L2 -2028 1286 1137 428 272 32 8 chrX 14419925 14420050 -162554090 + L2 LINE L2 595 722 -2592 687 237 62 17 chrX 14420086 14420263 -162553877 - LTR16A1 LTR ERVL -3 454 270 344 210 227 17 chrX 14420254 14420373 -162553767 - LTR16A1 LTR ERVL -313 144 1 * 357 361 105 13 chrX 14421247 14421485 -162552655 - L2 LINE L2 -13 3259 3000 34 42 0 0 chrX 14421512 14421560 -162552580 + AT_rich Low_complexity Low_complexity 1 48 0 2071 228 55 35 chrX 14422576 14423158 -162550982 + L1ME1 LINE L1 5581 6334 0 907 142 0 22 chrX 14423548 14423682 -162550458 + FLAM_C SINE Alu 1 131 -2 502 172 11 0 chrX 14424113 14424206 -162549934 + MER20 DNA MER1_type 126 219 0 22 35 0 0 chrX 14426340 14426369 -162547771 + AT_rich Low_complexity Low_complexity 1 29 0 2342 122 35 24 chrX 14427118 14427487 -162546653 - THE1C LTR MaLR 0 375 3 1600 87 31 4 chrX 14428304 14428533 -162545607 + L1P4 LINE L1 5316 5550 -615 391 317 49 30 chrX 14428553 14428818 -162545322 + L1MC4a LINE L1 7146 7415 -393 * 423 273 119 37 chrX 14428786 14429163 -162544977 + L1MC5 LINE L1 7292 7699 -262 679 203 157 0 chrX 14429220 14429373 -162544767 + MER5A DNA MER1_type 13 189 0 2277 155 76 9 chrX 14429779 14430212 -162543928 + MLT1C LTR MaLR 6 467 0 787 270 51 13 chrX 14430270 14430507 -162543633 - MIR SINE MIR -11 251 6 516 231 25 85 chrX 14431660 14431859 -162542281 - 7SK RNA RNA -1 192 6 257 61 0 0 chrX 14431860 14431893 -162542247 - MIR SINE MIR -61 147 115 1453 256 60 46 chrX 14431994 14432381 -162541759 - L2 LINE L2 -176 3137 2743 2485 68 0 0 chrX 14432381 14432676 -162541464 + AluY SINE Alu 1 295 -16 1453 256 60 46 chrX 14432676 14433022 -162541118 - L2 LINE L2 -570 2743 2403 1035 210 6 0 chrX 14433022 14433203 -162540937 - MER58A DNA MER1_type 0 224 43 1535 261 43 21 chrX 14433266 14433687 -162540453 + MLT1G1 LTR MaLR 1 430 -165 420 117 0 0 chrX 14433758 14433835 -162540305 + (GA)n Simple_repeat Simple_repeat 2 78 0 2084 118 0 0 chrX 14433837 14434117 -162540023 - AluSx SINE Alu -32 280 1 469 156 21 31 chrX 14434119 14434215 -162539925 + MLT1G1 LTR MaLR 491 585 -10 773 286 103 41 chrX 14434227 14434589 -162539551 - MLT1I LTR MaLR 0 409 49 827 266 24 12 chrX 14434648 14434896 -162539244 - L2 LINE L2 -941 2373 2123 1766 156 64 26 chrX 14434896 14435242 -162538898 + THE1C LTR MaLR 1 359 -16 1269 282 83 5 chrX 14435243 14435665 -162538475 - L2 LINE L2 -1196 2118 1664 398 268 54 36 chrX 14435713 14435825 -162538315 - MIR3 SINE MIR -88 120 7 1184 209 19 0 chrX 14436801 14437007 -162537133 - MER63A DNA MER1_type 0 210 1 350 163 7 220 chrX 14437199 14437340 -162536800 - MER5B DNA MER1_type -62 116 6 432 333 11 6 chrX 14437355 14437529 -162536611 + MER5B DNA MER1_type 4 178 0 516 281 85 6 chrX 14438331 14438495 -162535645 + MIR SINE MIR 31 207 -55 882 192 54 6 chrX 14439047 14439214 -162534926 - MER5B DNA MER1_type -3 175 1 422 293 57 0 chrX 14439221 14439327 -162534813 + L2 LINE L2 3144 3255 -17 317 263 76 44 chrX 14440557 14440757 -162533383 - MER20B DNA MER1_type -5 214 2 2168 200 63 30 chrX 14441772 14442298 -162531842 + L1ME3 LINE L1 5620 6162 0 1864 114 0 0 chrX 14642302 14642556 -162331584 + AluSx SINE Alu 59 312 0 1423 191 15 29 chrX 14642565 14642871 -162331269 + AluJo SINE Alu 14 315 0 25 51 0 0 chrX 14642871 14642910 -162331230 + AT_rich Low_complexity Low_complexity 1 39 0 794 279 126 38 chrX 14643492 14643961 -162330179 + MLT1J LTR MaLR 2 511 0 206 289 0 0 chrX 14644498 14644550 -162329590 + CT-rich Low_complexity Low_complexity 2 53 0 1867 120 53 14 chrX 14644672 14644955 -162329185 - AluJb SINE Alu -18 294 1 297 320 20 0 chrX 14645048 14645148 -162328992 + L2 LINE L2 2929 3030 -242 1885 163 0 3 chrX 14645167 14645474 -162328666 + AluJo SINE Alu 1 306 -6 816 171 6 11 chrX 14645493 14645669 -162328471 + GA-rich Low_complexity Low_complexity 4 178 0 480 211 15 8 chrX 14645682 14645815 -162328325 + GA-rich Low_complexity Low_complexity 1 134 0 2823 16 0 0 chrX 14645912 14646216 -162327924 + AluY SINE Alu 1 304 -7 686 187 122 0 chrX 14646370 14646509 -162327631 - FAM SINE Alu -19 156 1 1643 203 107 24 chrX 14646780 14647249 -162326891 - Charlie4a DNA MER1_type 0 508 1 660 214 47 93 chrX 14647715 14647972 -162326168 + MER112 DNA MER1_type 7 251 -9 213 229 21 0 chrX 14647972 14648020 -162326120 + L3 LINE CR1 1523 1571 -6 22 0 0 0 chrX 14648069 14648091 -162326049 + AT_rich Low_complexity Low_complexity 1 22 0 931 202 77 114 chrX 14648096 14648247 -162325893 - L1MC4 LINE L1 0 8042 7887 2233 100 0 0 chrX 14648247 14648528 -162325612 - AluSx SINE Alu -29 283 3 931 202 77 114 chrX 14648528 14648842 -162325298 - L1MC4 LINE L1 -155 7887 7594 7550 185 151 13 chrX 14648852 14649208 -162324932 - L1PB1 LINE L1 -2 6149 5843 420 20 0 0 chrX 14649208 14649257 -162324883 + (TA)n Simple_repeat Simple_repeat 2 50 0 7550 185 151 13 chrX 14649257 14650190 -162323950 - L1PB1 LINE L1 -308 5843 5040 2144 116 0 7 chrX 14650190 14650482 -162323658 + AluSx SINE Alu 1 290 -22 7550 185 151 13 chrX 14650482 14652572 -162321568 - L1PB1 LINE L1 -1111 5040 2277 322 197 244 16 chrX 14652575 14652702 -162321438 + MLT1F LTR MaLR 321 476 -66 6591 192 109 41 chrX 14652716 14654432 -162319708 - L1MC4 LINE L1 -2 8040 6208 225 204 204 0 chrX 14654432 14654481 -162319659 + MLT1F LTR MaLR 491 549 -6 309 261 97 23 chrX 14654488 14654638 -162319502 - L1MC4a LINE L1 -455 7353 7248 364 180 11 11 chrX 14654927 14655016 -162319124 + GA-rich Low_complexity Low_complexity 4 92 0 1042 88 6 28 chrX 14655018 14655200 -162318940 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 194 167 167 0 chrX 14655459 14655501 -162318639 + L2 LINE L2 3232 3280 -33 2033 149 3 3 chrX 14655519 14655821 -162318319 - AluJo SINE Alu -10 302 1 237 279 93 0 chrX 14655870 14655956 -162318184 - L2 LINE L2 -29 3243 3150 23 0 0 0 chrX 14655970 14655993 -162318147 + AT_rich Low_complexity Low_complexity 1 23 0 185 32 0 65 chrX 14656221 14656237 -162317903 + (CAT)n Simple_repeat Simple_repeat 2 17 -13 2653 34 0 0 chrX 14656237 14656534 -162317606 - AluY SINE Alu -14 297 1 185 32 0 65 chrX 14656534 14656548 -162317592 + (CAT)n Simple_repeat Simple_repeat 17 30 0 246 290 100 30 chrX 14656758 14656989 -162317151 - L1ME4a LINE L1 -76 6045 5799 261 291 17 81 chrX 14657139 14657232 -162316908 - LTR37B LTR ERV1 -270 198 101 12106 147 59 35 chrX 14657232 14657485 -162316655 + Charlie5 DNA MER1_type 1 247 -2377 2448 84 0 0 chrX 14657485 14657781 -162316359 + AluSx SINE Alu 1 296 -16 12106 147 59 35 chrX 14657781 14660006 -162314134 + Charlie5 DNA MER1_type 247 2544 -80 2427 109 0 0 chrX 14660006 14660317 -162313823 - AluSx SINE Alu -1 311 1 12106 147 59 35 chrX 14660317 14660400 -162313740 + Charlie5 DNA MER1_type 2544 2624 0 261 291 17 81 chrX 14660400 14660478 -162313662 - LTR37B LTR ERV1 -367 101 38 2419 64 0 7 chrX 14660554 14660850 -162313290 + AluSg SINE Alu 1 294 -16 289 317 117 70 chrX 14660907 14661559 -162312581 - L2 LINE L2 -456 2858 2157 711 201 92 12 chrX 14661559 14661723 -162312417 + MER5B DNA MER1_type 2 178 0 289 317 117 70 chrX 14661723 14661897 -162312243 - L2 LINE L2 -1157 2157 1993 405 0 0 0 chrX 14661989 14662034 -162312106 + (CA)n Simple_repeat Simple_repeat 2 46 0 2745 189 38 49 chrX 14662866 14663547 -162310593 - L1MD3 LINE L1 0 8041 7381 297 167 0 0 chrX 14663897 14663951 -162310189 + (TA)n Simple_repeat Simple_repeat 2 55 0 1674 156 52 0 chrX 14663954 14664224 -162309916 - AluJo SINE Alu -28 284 1 315 266 126 53 chrX 14664730 14664937 -162309203 + MIR SINE MIR 26 247 -15 197 273 0 18 chrX 14664973 14665028 -162309112 + MIR3 SINE MIR 10 63 -145 2231 114 7 3 chrX 14665469 14665777 -162308363 + AluSx SINE Alu 1 309 -3 619 237 19 79 chrX 14665850 14666065 -162308075 - MIR SINE MIR -13 249 48 467 226 155 0 chrX 14666269 14666424 -162307716 + MIR SINE MIR 16 194 -68 2052 139 7 7 chrX 14666589 14666898 -162307242 + AluJo SINE Alu 3 311 -1 3781 142 66 41 chrX 14667270 14667996 -162306144 - L1MB5 LINE L1 0 6174 5431 609 201 104 18 chrX 14668017 14668054 -162306086 + MER5B DNA MER1_type 1 33 -145 306 0 0 0 chrX 14668054 14668088 -162306052 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 609 201 104 18 chrX 14668088 14668214 -162305926 + MER5B DNA MER1_type 33 178 0 2295 108 3 0 chrX 14668245 14668550 -162305590 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 14668768 14668796 -162305344 + AT_rich Low_complexity Low_complexity 1 28 0 219 69 0 0 chrX 14668960 14668989 -162305151 + (CCA)n Simple_repeat Simple_repeat 2 30 0 536 217 11 94 chrX 14669253 14669433 -162304707 - MER90 LTR ERV1 0 614 450 * 1674 153 254 8 chrX 14669424 14669790 -162304350 + LTR32 LTR ERVL 16 471 0 2022 171 14 37 chrX 14669791 14670219 -162303921 - MER90 LTR ERV1 -157 418 1 277 294 96 7 chrX 14670387 14670533 -162303607 - MER90-int LTR ERV1 -162 6639 6481 2036 147 7 0 chrX 14670735 14671035 -162303105 - AluSx SINE Alu -10 302 1 732 172 39 0 chrX 14671220 14671348 -162302792 - MER45A DNA AcHobo -4 174 42 27 49 0 0 chrX 14672606 14672647 -162301493 + GC_rich Low_complexity Low_complexity 1 41 0 22 94 0 0 chrX 14672855 14672919 -162301221 + GC_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chrX 14672925 14672948 -162301192 + GC_rich Low_complexity Low_complexity 1 23 0 2788 35 0 0 chrX 14673554 14673864 -162300276 + AluSg SINE Alu 1 310 0 222 296 99 33 chrX 14674246 14674398 -162299742 + MIR SINE MIR 15 176 -86 2147 112 0 29 chrX 14674779 14675091 -162299049 - AluSx SINE Alu -4 308 6 1151 149 128 78 chrX 14676363 14676644 -162297496 + AluJb SINE Alu 1 295 -7 2008 130 7 3 chrX 14676645 14676938 -162297202 + AluSx SINE Alu 1 294 -18 292 195 183 0 chrX 14677440 14677522 -162296618 - Charlie4a DNA MER1_type -2 506 410 2118 82 19 4 chrX 14677603 14677872 -162296268 - AluSg SINE Alu -37 273 1 863 211 131 11 chrX 14677873 14678148 -162295992 - Charlie4a DNA MER1_type -184 324 17 308 260 178 14 chrX 14678353 14678499 -162295641 - MIR SINE MIR -44 218 49 699 159 220 16 chrX 14678559 14678741 -162295399 + MER20 DNA MER1_type 1 219 0 243 296 42 49 chrX 14679255 14679397 -162294743 + MER5A DNA MER1_type 48 188 -1 936 170 180 0 chrX 14681763 14681963 -162292177 + MER46A DNA MER2_type 1 236 0 621 259 0 0 chrX 14682016 14682151 -162291989 - FLAM_A SINE Alu -7 135 1 6887 67 17 8 chrX 14682386 14683680 -162290460 - L1PA8 LINE L1 0 6172 4864 428 215 11 21 chrX 14683973 14684066 -162290074 + MIR SINE MIR 19 110 -152 2330 207 91 30 chrX 14684069 14684356 -162289784 - L1M4 LINE L1 -1995 4151 3883 180 97 0 0 chrX 14684356 14684387 -162289753 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2330 207 91 30 chrX 14684387 14684699 -162289441 - L1M4 LINE L1 -2263 3883 3502 1527 179 0 64 chrX 14684699 14685012 -162289128 - AluJb SINE Alu -19 293 1 2330 207 91 30 chrX 14685012 14685101 -162289039 - L1M4 LINE L1 -2644 3502 3420 3429 85 23 13 chrX 14685116 14685588 -162288552 - LTR15 LTR ERV1 -16 477 1 652 246 111 14 chrX 14685590 14685940 -162288200 - L1M4 LINE L1 -2724 3422 3039 577 264 112 11 chrX 14686152 14686330 -162287810 + MER58C DNA MER1_type 20 215 0 2009 128 10 0 chrX 14686797 14687085 -162287055 - AluSx SINE Alu -21 291 1 1686 125 53 15 chrX 14688258 14688406 -162285734 - AluJb SINE Alu -38 274 110 2477 78 0 3 chrX 14688406 14688715 -162285425 - AluSg SINE Alu 0 310 3 1686 125 53 15 chrX 14688715 14688830 -162285310 - AluJb SINE Alu -202 110 1 453 243 120 2 chrX 14689133 14689241 -162284899 - MLT1E1 LTR MaLR 0 654 560 1972 133 37 0 chrX 14689241 14689535 -162284605 - AluSx SINE Alu -7 305 1 2795 121 29 33 chrX 14689546 14690296 -162283844 - L1P5 LINE L1 -480 5671 4925 1115 183 25 29 chrX 14690391 14690632 -162283508 - L1MB7 LINE L1 -10 6174 5935 1235 112 0 0 chrX 14690632 14690793 -162283347 - AluSp SINE Alu -19 294 134 891 169 174 29 chrX 14690793 14691035 -162283105 - L1MB7 LINE L1 -234 5950 5674 410 97 187 18 chrX 14691477 14691576 -162282564 - L1ME1 LINE L1 -13 6153 6048 225 0 0 0 chrX 14692984 14693009 -162281131 + (T)n Simple_repeat Simple_repeat 1 25 0 693 173 58 0 chrX 14694468 14694607 -162279533 - MER5B DNA MER1_type -1 177 31 1859 164 11 0 chrX 14694618 14694904 -162279236 - AluJb SINE Alu -23 289 1 21 0 0 0 chrX 14695006 14695027 -162279113 + AT_rich Low_complexity Low_complexity 1 21 0 269 296 34 0 chrX 14695758 14695846 -162278294 - Charlie8 DNA MER1_type -313 2104 2014 986 211 4 60 chrX 14695954 14696186 -162277954 - Charlie8 DNA MER1_type -588 1829 1611 1262 242 116 34 chrX 14696768 14697235 -162276905 - MLT1D LTR MaLR 0 505 1 276 186 85 0 chrX 14697245 14697304 -162276836 - Charlie8 DNA MER1_type -2293 124 61 975 149 0 14 chrX 14697304 14697452 -162276688 + AluJb SINE Alu 1 146 -166 1899 82 4 34 chrX 14697452 14697721 -162276419 + AluY SINE Alu 45 305 -6 1161 152 6 0 chrX 14697741 14697919 -162276221 + AluJb SINE Alu 118 296 -16 438 20 0 0 chrX 14699006 14699057 -162275083 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 223 132 0 0 chrX 14699398 14699436 -162274704 + MER5B DNA MER1_type 3 40 -138 558 205 14 53 chrX 14699440 14699594 -162274546 - LTR35 LTR ERV1 -1 677 497 248 210 210 17 chrX 14700270 14700389 -162273751 - MER5B DNA MER1_type -36 142 1 412 203 23 39 chrX 14700426 14700554 -162273586 - MER5A DNA MER1_type -63 126 1 785 128 0 0 chrX 14700759 14700876 -162273264 + L1PB1 LINE L1 6033 6149 -2 214 290 167 0 chrX 14701149 14701287 -162272853 + L2 LINE L2 2216 2376 -938 1974 146 10 0 chrX 14701759 14702061 -162272079 - AluSx SINE Alu -7 305 1 1168 132 0 21 chrX 14702510 14702700 -162271440 - AluJb SINE Alu -7 305 120 2262 98 3 7 chrX 14702864 14703160 -162270980 + AluSx SINE Alu 1 295 -17 365 196 62 52 chrX 14703289 14703386 -162270754 - MER58 DNA MER1_type -109 106 9 2049 127 6 32 chrX 14704576 14704890 -162269250 + AluSx SINE Alu 1 306 -6 1631 102 4 4 chrX 14705178 14705403 -162268737 + AluSg/x SINE Alu 76 300 -12 518 224 267 0 chrX 14705643 14705804 -162268336 - MER3 DNA MER1_type -5 204 1 180 0 0 0 chrX 14706806 14706826 -162267314 + (T)n Simple_repeat Simple_repeat 1 20 0 1199 259 132 41 chrX 14708091 14708698 -162265442 + L1MC4 LINE L1 7143 7804 -238 571 246 45 17 chrX 14709459 14709638 -162264502 - L1MC5 LINE L1 -47 7914 7731 2134 119 7 3 chrX 14710242 14710536 -162263604 + AluSx SINE Alu 1 295 -17 5590 73 1 0 chrX 14711136 14711851 -162262289 - L1PA8 LINE L1 0 6172 5457 272 89 44 0 chrX 14711851 14711896 -162262244 + Alu SINE Alu 249 295 -5 24 53 0 0 chrX 14711898 14711936 -162262204 + AT_rich Low_complexity Low_complexity 1 38 0 238 317 149 0 chrX 14711987 14712195 -162261945 + L1ME LINE L1 3719 3957 -2189 1252 102 12 0 chrX 14712213 14712379 -162261761 + AluSg/x SINE Alu 130 297 -15 216 0 0 0 chrX 14712379 14712403 -162261737 + (TA)n Simple_repeat Simple_repeat 2 25 0 340 118 0 0 chrX 14712405 14712456 -162261684 + L1PA16 LINE L1 6106 6156 -10 346 275 121 45 chrX 14712860 14712990 -162261150 + L1ME LINE L1 4408 4527 -1619 2262 93 10 0 chrX 14712990 14713280 -162260860 + AluSx SINE Alu 1 293 -19 346 275 121 45 chrX 14713280 14713480 -162260660 + L1ME LINE L1 4527 4763 -1383 2528 49 3 16 chrX 14714001 14714306 -162259834 + AluY SINE Alu 1 301 -10 250 300 0 0 chrX 14714376 14714466 -162259674 + L1ME LINE L1 5467 5556 -565 1714 164 0 26 chrX 14714985 14715290 -162258850 - AluJb SINE Alu -15 297 1 21 71 0 0 chrX 14715320 14715362 -162258778 + AT_rich Low_complexity Low_complexity 1 42 0 869 145 0 0 chrX 14715690 14715814 -162258326 + FLAM_C SINE Alu 1 124 -19 35 24 0 0 chrX 14715815 14715857 -162258283 + AT_rich Low_complexity Low_complexity 1 42 0 248 241 98 9 chrX 14715948 14716060 -162258080 + MIR SINE MIR 87 208 -54 1301 166 15 5 chrX 14717774 14717979 -162256161 + AluJb SINE Alu 85 291 -21 2451 84 7 3 chrX 14718016 14718325 -162255815 + AluSx SINE Alu 1 310 -2 889 180 130 10 chrX 14718671 14718871 -162255269 + MER58A DNA MER1_type 1 224 0 2490 70 0 3 chrX 14718945 14719246 -162254894 - AluSp SINE Alu -13 300 1 1304 248 35 0 chrX 14719280 14719570 -162254570 - AluJb SINE Alu -10 302 3 2577 58 7 0 chrX 14720333 14720642 -162253498 + AluY SINE Alu 1 311 0 603 159 115 9 chrX 14721126 14721239 -162252901 + FLAM_A SINE Alu 10 134 -8 1950 140 3 19 chrX 14721684 14721991 -162252149 - AluSx SINE Alu -10 302 1 416 191 29 156 chrX 14722007 14722103 -162252037 + LTR45B LTR ERV1 324 390 -99 891 192 0 0 chrX 14722103 14722259 -162251881 + FRAM SINE Alu 1 156 -10 416 191 29 156 chrX 14722259 14722335 -162251805 + LTR45B LTR ERV1 390 474 -15 2247 98 0 3 chrX 14723131 14723427 -162250713 - AluSq SINE Alu -17 296 2 405 231 141 19 chrX 14723757 14723913 -162250227 - MLT1L LTR MaLR -221 394 220 324 227 11 45 chrX 14724782 14724870 -162249270 - MER5B DNA MER1_type -3 175 91 583 163 73 45 chrX 14724930 14725108 -162249032 + MER5A DNA MER1_type 1 183 -6 279 239 12 42 chrX 14725795 14725962 -162248178 + CT-rich Low_complexity Low_complexity 4 165 0 31 0 0 0 chrX 14726413 14726444 -162247696 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chrX 14726595 14726616 -162247524 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 22 0 0 0 chrX 14727499 14727521 -162246619 + AT_rich Low_complexity Low_complexity 1 22 0 365 113 0 0 chrX 14727521 14727574 -162246566 - Alu SINE Alu -10 292 240 2277 113 6 3 chrX 14727625 14727936 -162246204 - AluSx SINE Alu 0 312 1 1941 132 10 10 chrX 14729300 14729589 -162244551 - AluSx SINE Alu -23 289 1 1213 198 108 10 chrX 14729926 14730366 -162243774 - Charlie4a DNA MER1_type 0 508 1 38915 84 8 8 chrX 14731393 14737535 -162236605 - L1PA6 LINE L1 0 6154 11 571 306 84 16 chrX 14738411 14738502 -162235638 + L1MC4 LINE L1 6962 7045 -997 2401 84 0 0 chrX 14738502 14738799 -162235341 + AluY SINE Alu 1 297 -14 571 306 84 16 chrX 14738799 14739030 -162235110 + L1MC4 LINE L1 7045 7306 -736 1005 210 46 18 chrX 14739031 14739437 -162234703 - MLT1D LTR MaLR 0 505 43 1053 237 119 29 chrX 14739496 14739906 -162234234 + L1MC4 LINE L1 7315 7761 -281 2386 84 0 7 chrX 14740687 14740985 -162233155 + AluSx SINE Alu 1 296 -16 502 212 182 36 chrX 14741011 14741176 -162232964 - MER5A DNA MER1_type 0 189 1 4231 131 72 8 chrX 14741394 14741662 -162232478 + L1MA4 LINE L1 4558 4807 -1493 2578 63 0 0 chrX 14741662 14741965 -162232175 + AluY SINE Alu 1 303 -8 4231 131 72 8 chrX 14741965 14742701 -162231439 + L1MA4 LINE L1 4807 5613 -687 264 160 0 32 chrX 14742701 14742795 -162231345 + (TA)n Simple_repeat Simple_repeat 2 92 0 806 139 139 0 chrX 14742800 14742965 -162231175 - L1MA4 LINE L1 -332 5968 5781 2964 163 93 0 chrX 14743005 14743605 -162230535 + L1MA4 LINE L1 5642 6297 -3 1744 144 112 90 chrX 14744509 14744966 -162229174 + MLT1C LTR MaLR 1 467 0 267 230 144 101 chrX 14745009 14745148 -162228992 - MLT1I LTR MaLR 0 409 288 1615 128 4 0 chrX 14745470 14745704 -162228436 + AluSg/x SINE Alu 67 301 -11 1809 107 107 11 chrX 14746213 14746227 -162227913 - AluSq SINE Alu -15 298 287 351 0 0 0 chrX 14746227 14746266 -162227874 + (TG)n Simple_repeat Simple_repeat 2 40 0 1809 107 107 11 chrX 14746266 14746523 -162227617 - AluSq SINE Alu -26 287 1 2382 87 0 3 chrX 14746625 14746924 -162227216 + AluSg SINE Alu 1 298 -12 1379 111 11 0 chrX 14747353 14747543 -162226597 + AluSq SINE Alu 1 192 -121 649 250 95 38 chrX 14748128 14748263 -162225877 - L1ME LINE L1 -567 5603 5477 1828 133 4 25 chrX 14748263 14748541 -162225599 + AluSx SINE Alu 2 273 -39 252 0 0 0 chrX 14748541 14748569 -162225571 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 649 250 95 38 chrX 14748569 14749009 -162225131 - L1ME LINE L1 -692 5478 4999 2329 104 3 0 chrX 14749540 14749849 -162224291 - AluSx SINE Alu -2 310 1 2027 144 0 3 chrX 14750136 14750428 -162223712 + AluJb SINE Alu 1 291 -21 854 229 114 54 chrX 14751316 14751888 -162222252 + MER115 DNA AcHobo 1 4031 0 354 156 0 0 chrX 14752643 14752707 -162221433 + C-rich Low_complexity Low_complexity 5 68 0 1754 139 0 4 chrX 14752707 14752952 -162221188 - AluSx SINE Alu -32 280 37 243 236 0 0 chrX 14752996 14753068 -162221072 + CT-rich Low_complexity Low_complexity 1 72 0 545 260 27 7 chrX 14753296 14753446 -162220694 - MIR SINE MIR -108 154 2 614 253 56 11 chrX 14753563 14753741 -162220399 - LTR33A LTR ERVL -21 502 317 438 243 91 77 chrX 14753940 14754126 -162220014 - LTR33A LTR ERVL -349 174 13 400 261 27 80 chrX 14754177 14754365 -162219775 - MER104 DNA MER2_type -2 178 1 312 341 60 44 chrX 14754468 14754573 -162219567 - L2 LINE L2 -213 3059 2957 2556 51 0 6 chrX 14754573 14754884 -162219256 - AluY SINE Alu -2 309 1 312 341 60 44 chrX 14754884 14755030 -162219110 - L2 LINE L2 -315 2957 2804 789 160 9 173 chrX 14755460 14755536 -162218604 + MER5A DNA MER1_type 1 88 -101 2391 99 0 0 chrX 14755536 14755848 -162218292 + AluSx SINE Alu 1 312 0 789 160 9 173 chrX 14755848 14755932 -162218208 + MER5A DNA MER1_type 88 116 -73 2078 133 0 0 chrX 14755932 14756218 -162217922 - AluJb SINE Alu -26 286 1 789 160 9 173 chrX 14756218 14756281 -162217859 + MER5A DNA MER1_type 116 188 -1 2240 202 46 49 chrX 14756518 14756972 -162217168 + MER74B LTR ERVL 56 509 -113 4806 159 13 13 chrX 14756972 14757798 -162216342 - LTR1B LTR ERV1 0 826 1 2240 202 46 49 chrX 14757798 14757912 -162216228 + MER74B LTR ERVL 509 622 0 359 283 113 13 chrX 14757912 14758071 -162216069 + MIR SINE MIR 35 209 -53 345 256 40 44 chrX 14758469 14758606 -162215534 + MIR SINE MIR 16 164 -63 215 125 104 0 chrX 14758764 14758812 -162215328 + CT-rich Low_complexity Low_complexity 1 53 0 1922 105 69 0 chrX 14759807 14760083 -162214057 - AluSc SINE Alu -14 295 1 972 230 0 63 chrX 14760113 14760286 -162213854 - MER58A DNA MER1_type -2196 224 69 2173 121 0 16 chrX 14760286 14760601 -162213539 + AluJb SINE Alu 1 310 -2 972 230 0 63 chrX 14760601 14760666 -162213474 - MER58A DNA MER1_type -2351 69 1 1302 85 5 0 chrX 14761064 14761253 -162212887 - L1MA1 LINE L1 0 6302 6113 1780 92 0 32 chrX 14761936 14762221 -162211919 - AluSx SINE Alu 0 320 44 2026 145 0 3 chrX 14762226 14762516 -162211624 - AluSx SINE Alu -23 289 1 221 0 0 33 chrX 14762528 14762558 -162211582 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2141 92 7 0 chrX 14762567 14762838 -162211302 - AluSg SINE Alu -37 273 1 2047 130 3 7 chrX 14763648 14763955 -162210185 - AluSx SINE Alu -6 306 1 436 344 73 13 chrX 14766306 14766608 -162207532 - MARNA DNA Mariner -117 469 150 411 224 301 0 chrX 14766648 14766791 -162207349 + MER5A DNA MER1_type 4 189 0 1789 180 27 15 chrX 14767290 14767623 -162206517 - MER58B DNA MER1_type -4 337 1 25 0 0 0 chrX 14767772 14767797 -162206343 + AT_rich Low_complexity Low_complexity 1 25 0 24 19 0 38 chrX 14767935 14767949 -162206191 + AT_rich Low_complexity Low_complexity 1 14 -37 291 54 0 0 chrX 14767949 14767986 -162206154 + (CA)n Simple_repeat Simple_repeat 2 38 0 24 19 0 38 chrX 14767986 14768004 -162206136 + AT_rich Low_complexity Low_complexity 14 31 -20 2548 72 0 0 chrX 14768004 14768309 -162205831 - AluSx SINE Alu -7 305 1 24 19 0 38 chrX 14768309 14768328 -162205812 + AT_rich Low_complexity Low_complexity 31 51 0 22 56 0 0 chrX 14768660 14768696 -162205444 + AT_rich Low_complexity Low_complexity 1 36 0 2490 57 0 10 chrX 14768765 14769066 -162205074 + AluY SINE Alu 1 298 -13 231 304 15 70 chrX 14769965 14769991 -162204149 - MIR3 SINE MIR -30 178 152 760 156 101 45 chrX 14769991 14770170 -162203970 - MER5A DNA MER1_type 0 189 1 231 304 15 70 chrX 14770170 14770271 -162203869 - MIR3 SINE MIR -56 152 55 2072 99 34 17 chrX 14770926 14771218 -162202922 - AluSx SINE Alu -15 297 1 2322 144 68 23 chrX 14771339 14771734 -162202406 - LTR42 LTR ERVL 0 495 83 1187 144 0 0 chrX 14771734 14771907 -162202233 + AluSg/x SINE Alu 130 302 -8 359 168 0 119 chrX 14771907 14772008 -162202132 - LTR42 LTR ERVL -402 93 5 232 280 199 48 chrX 14772195 14772311 -162201829 - L2 LINE L2 -8 3305 3208 602 186 93 0 chrX 14772311 14772429 -162201711 + FLAM_A SINE Alu 2 130 -3 232 280 199 48 chrX 14772429 14773109 -162201031 - L2 LINE L2 -105 3208 2377 225 0 0 0 chrX 14773191 14773216 -162200924 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 333 0 0 0 chrX 14773215 14773252 -162200888 + (TA)n Simple_repeat Simple_repeat 1 37 0 564 295 29 0 chrX 14773257 14773461 -162200679 - MIR SINE MIR -36 226 18 365 327 39 0 chrX 14774293 14774449 -162199691 + MIR SINE MIR 37 198 -64 1896 121 0 95 chrX 14774452 14774790 -162199350 + AluSx SINE Alu 1 306 -6 984 260 12 8 chrX 14774892 14775146 -162198994 + MER46C DNA MER2_type 80 334 -4 521 210 54 65 chrX 14775152 14775338 -162198802 + MER53 DNA DNA 3 186 -3 627 267 102 0 chrX 14775338 14775525 -162198615 - MIR SINE MIR -32 230 25 21 36 0 0 chrX 14775593 14775621 -162198519 + AT_rich Low_complexity Low_complexity 1 28 0 2339 80 3 17 chrX 14776379 14776705 -162197435 + AluY SINE Alu 1 311 0 953 147 0 0 chrX 14776804 14776947 -162197193 - FLAM_C SINE Alu 0 143 1 317 257 47 9 chrX 14777629 14777798 -162196342 + MER115 DNA AcHobo 39 251 -442 231 222 0 0 chrX 14777863 14777903 -162196237 + Zaphod DNA AcHobo 3945 3984 -47 1147 246 108 42 chrX 14777903 14778417 -162195723 - MLT1H LTR MaLR 0 555 1 302 200 0 0 chrX 14778419 14778469 -162195671 + Zaphod DNA AcHobo 3982 4031 0 2160 129 3 3 chrX 14778513 14778816 -162195324 - AluSx SINE Alu -9 303 1 186 189 0 0 chrX 14780417 14780454 -162193686 + (CA)n Simple_repeat Simple_repeat 2 38 0 2214 91 29 16 chrX 14781054 14781363 -162192777 - AluSq SINE Alu 0 313 1 615 241 35 24 chrX 14781366 14781536 -162192604 - L1ME LINE L1 -394 5727 5556 2035 118 31 0 chrX 14781539 14781826 -162192314 + AluSq SINE Alu 1 296 -17 1011 225 67 0 chrX 14781906 14782115 -162192025 + MER58A DNA MER1_type 2 224 0 2046 111 37 13 chrX 14782245 14782543 -162191597 + AluSx SINE Alu 1 305 -7 371 331 39 31 chrX 14782779 14783033 -162191107 - L1M4 LINE L1 -2299 3847 3592 2073 152 0 0 chrX 14783198 14783495 -162190645 + AluSx SINE Alu 1 297 -15 490 216 35 0 chrX 14783528 14783644 -162190496 - L1MC4 LINE L1 0 8042 7923 253 237 14 36 chrX 14783663 14783802 -162190338 + (TA)n Simple_repeat Simple_repeat 2 137 0 186 250 0 0 chrX 14783951 14784023 -162190117 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 185 62 0 31 chrX 14784164 14784196 -162189944 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1865 160 0 4 chrX 14784196 14784477 -162189663 - AluSx SINE Alu -32 280 1 435 231 8 179 chrX 14784581 14784697 -162189443 + MIR SINE MIR 48 100 -162 1188 159 19 5 chrX 14784697 14784905 -162189235 + L1PB3 LINE L1 5943 6153 -1 435 231 8 179 chrX 14784905 14785039 -162189101 + MIR SINE MIR 100 255 -7 2314 107 0 0 chrX 14786084 14786384 -162187756 - AluSq SINE Alu -13 300 1 2266 115 0 3 chrX 14786841 14787154 -162186986 + AluSx SINE Alu 1 312 0 797 133 7 13 chrX 14787178 14787328 -162186812 + L1MA4 LINE L1 6143 6291 -9 2213 105 7 0 chrX 14787513 14787807 -162186333 - AluSx SINE Alu -14 298 3 493 272 42 62 chrX 14788143 14788371 -162185769 - MLT1K LTR MaLR -14 601 369 192 196 22 185 chrX 14788412 14788468 -162185672 - L2 LINE L2 -44 3269 3231 1648 102 159 0 chrX 14788468 14788755 -162185385 + AluSx SINE Alu 1 326 0 192 196 22 185 chrX 14788755 14788789 -162185351 - L2 LINE L2 -82 3231 3193 1207 196 34 40 chrX 14788835 14789161 -162184979 + MER33 DNA MER1_type 1 324 0 417 270 52 89 chrX 14789244 14789271 -162184869 + L2 LINE L2 3053 3079 -234 1594 181 49 3 chrX 14789271 14789558 -162184582 + AluSx SINE Alu 1 300 -12 417 270 52 89 chrX 14789558 14789800 -162184340 + L2 LINE L2 3079 3312 -1 322 174 58 0 chrX 14790152 14790221 -162183919 + MIR SINE MIR 63 135 -127 186 229 0 0 chrX 14790329 14790364 -162183776 + L2 LINE L2 3263 3297 -16 2172 116 0 0 chrX 14790761 14791054 -162183086 - AluSx SINE Alu -19 293 1 1973 214 52 2 chrX 14791132 14791594 -162182546 + Charlie4a DNA MER1_type 22 506 -2 1003 190 0 0 chrX 14791959 14792122 -162182018 + FRAM SINE Alu 2 164 -12 413 278 37 0 chrX 14793589 14793697 -162180443 - MIR SINE MIR -113 149 38 181 250 0 0 chrX 14793737 14793781 -162180359 - MIR SINE MIR -111 151 108 2050 122 22 113 chrX 14793784 14794193 -162179947 - THE1C LTR MaLR -3 372 1 188 206 0 0 chrX 14794195 14794229 -162179911 - MIR SINE MIR -152 110 77 1171 220 30 43 chrX 14794255 14794560 -162179580 - MER33 DNA MER1_type -1 323 23 615 213 16 0 chrX 14794580 14794702 -162179438 - MER5B DNA MER1_type -2 176 53 187 43 0 0 chrX 14794702 14794725 -162179415 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2282 95 0 0 chrX 14794725 14795010 -162179130 - AluSx SINE Alu -27 285 1 530 238 125 6 chrX 14795929 14796089 -162178051 - HsTC2 DNA Tc2 0 1898 1720 2588 111 15 15 chrX 14796095 14796490 -162177650 - L1PA13 LINE L1 -7 6156 5762 297 192 0 0 chrX 14796490 14796542 -162177598 - MER5A DNA MER1_type -126 63 12 2335 82 3 0 chrX 14797379 14797673 -162176467 - AluSg SINE Alu -15 295 1 524 318 80 17 chrX 14797907 14798196 -162175944 - L2 LINE L2 -351 2963 2657 1914 166 7 0 chrX 14798911 14799213 -162174927 + AluJb SINE Alu 1 304 -8 873 210 10 70 chrX 14799627 14799775 -162174365 + MER5A DNA MER1_type 2 137 -52 2329 90 0 26 chrX 14799775 14800087 -162174053 - AluSq SINE Alu -9 304 1 873 210 10 70 chrX 14800087 14800138 -162174002 + MER5A DNA MER1_type 136 189 0 508 282 160 11 chrX 14800489 14800677 -162173463 + MIR SINE MIR 35 250 -12 2066 101 11 14 chrX 14800798 14801084 -162173056 + AluSx SINE Alu 1 285 -27 1738 167 0 20 chrX 14802347 14802640 -162171500 + AluJo SINE Alu 1 287 -25 263 301 106 9 chrX 14803419 14803532 -162170608 - L2 LINE L2 -4 3268 3145 698 280 94 30 chrX 14803681 14803767 -162170373 + L1M4 LINE L1 4968 5047 -1099 2326 96 10 0 chrX 14803767 14803894 -162170246 + AluSx SINE Alu 3 127 -185 2328 88 3 19 chrX 14803894 14804211 -162169929 + AluSx SINE Alu 1 312 0 2326 96 10 0 chrX 14804211 14804385 -162169755 + AluSx SINE Alu 127 307 -5 698 280 94 30 chrX 14804385 14804670 -162169470 + L1M4 LINE L1 5047 5363 -783 492 155 225 8 chrX 14804685 14804814 -162169326 + L1ME3A LINE L1 5993 6149 -21 726 257 22 35 chrX 14805200 14805426 -162168714 - MIR SINE MIR -9 253 31 2344 89 20 0 chrX 14805585 14805887 -162168253 - AluSg SINE Alu -2 308 1 2254 103 0 3 chrX 14806751 14807041 -162167099 + AluSx SINE Alu 9 297 -15 189 0 0 0 chrX 14807235 14807256 -162166884 + (T)n Simple_repeat Simple_repeat 1 21 0 691 206 71 7 chrX 14810585 14810726 -162163414 - MER58B DNA MER1_type 0 341 192 621 246 102 80 chrX 14811247 14811735 -162162405 - L1MC5 LINE L1 -63 7898 7400 482 216 60 43 chrX 14811725 14811918 -162162222 + L1MC5 LINE L1 7023 7249 -625 * 264 310 62 9 chrX 14811920 14812033 -162162107 + L1MC4 LINE L1 7345 7463 -579 275 355 50 8 chrX 14812698 14812819 -162161321 + MIR3 SINE MIR 34 159 -49 249 368 83 15 chrX 14813540 14813673 -162160467 - MER91A DNA MER1_type -17 179 38 392 156 167 0 chrX 14814078 14814168 -162159972 - L1MA4 LINE L1 -2 6298 6194 * 11102 176 27 73 chrX 14814160 14816116 -162158024 - L1P4 LINE L1 -513 5652 3608 743 160 67 0 chrX 14816116 14816235 -162157905 - FLAM_A SINE Alu -6 127 1 11102 176 27 73 chrX 14816235 14817242 -162156898 - L1P4 LINE L1 -2557 3608 2868 2360 97 3 0 chrX 14817242 14817541 -162156599 + AluSq SINE Alu 1 300 -13 11102 176 27 73 chrX 14817541 14817954 -162156186 - L1P4 LINE L1 -3297 2868 2438 4390 153 10 14 chrX 14817979 14818683 -162155457 - L1M3f LINE L1 -4625 703 3 728 213 62 71 chrX 14819848 14820088 -162154052 - L1ME1 LINE L1 -4 6162 5925 2383 197 60 21 chrX 14820091 14820975 -162153165 - L1ME1 LINE L1 -309 5857 4935 2154 128 0 0 chrX 14820975 14821271 -162152869 - AluSx SINE Alu -16 296 1 2383 197 60 21 chrX 14821271 14821320 -162152820 - L1ME1 LINE L1 -1231 4935 4889 2288 121 0 0 chrX 14821358 14821665 -162152475 - AluSx SINE Alu 0 312 6 404 324 62 0 chrX 14821961 14822106 -162152034 + MIR3 SINE MIR 30 183 -25 471 261 42 28 chrX 14822795 14822937 -162151203 - MER5A DNA MER1_type 0 189 46 328 304 87 37 chrX 14822799 14822960 -162151180 + MER5A DNA MER1_type 18 186 -3 * 302 327 170 22 chrX 14823320 14823632 -162150508 + L2 LINE L2 2487 2844 -470 2549 118 28 3 chrX 14823669 14824024 -162150116 - THE1B LTR MaLR 0 364 1 2070 150 0 0 chrX 14824322 14824622 -162149518 - AluSx SINE Alu -12 300 1 2405 93 0 6 chrX 14824687 14824999 -162149141 - AluSg SINE Alu 0 310 1 282 292 10 31 chrX 14825025 14825121 -162149019 - L2 LINE L2 -2 3311 3218 318 115 0 0 chrX 14826071 14826123 -162148017 + (TTTCC)n Simple_repeat Simple_repeat 3 54 0 1034 309 47 12 chrX 14829139 14829564 -162144576 - MLT1L LTR MaLR 0 615 71 234 263 18 0 chrX 14829522 14829579 -162144561 - LTR67 LTR ERVL -401 156 99 * 2061 127 34 0 chrX 14829716 14830007 -162144133 - AluSx SINE Alu -11 301 1 24 0 0 0 chrX 14830043 14830067 -162144073 + AT_rich Low_complexity Low_complexity 1 24 0 309 276 5 73 chrX 14830119 14830311 -162143829 + GA-rich Low_complexity Low_complexity 1 179 0 2246 106 6 34 chrX 14830454 14830775 -162143365 + AluSx SINE Alu 1 312 0 274 230 120 20 chrX 14831962 14832062 -162142078 - L1ME4a LINE L1 -5 6116 6007 493 248 13 46 chrX 14832136 14832289 -162141851 + MER5A DNA MER1_type 18 165 -24 2320 97 0 13 chrX 14832839 14833149 -162140991 + AluSx SINE Alu 1 306 -6 1372 242 101 11 chrX 14833388 14833764 -162140376 - MLT1J2 LTR MaLR -2 448 39 3407 118 17 9 chrX 14833912 14834446 -162139694 - L1MA2 LINE L1 -34 6270 5733 183 269 103 39 chrX 14834447 14834525 -162139615 + L2 LINE L2 3212 3294 -19 486 234 170 4 chrX 14834917 14835073 -162139067 - MIR SINE MIR -63 145 19 6259 77 13 3 chrX 14835262 14836111 -162138029 - L1PB2 LINE L1 -2 6149 5293 682 219 56 0 chrX 14836434 14836594 -162137546 - MER63B DNA MER1_type -267 169 1 581 256 147 0 chrX 14837058 14837214 -162136926 + MER5A DNA MER1_type 11 189 0 987 186 38 6 chrX 14837283 14837466 -162136674 - MER5A DNA MER1_type 0 189 1 329 314 124 7 chrX 14837578 14837731 -162136409 + MIR SINE MIR 32 202 -60 790 130 0 0 chrX 14837771 14837886 -162136254 - MER46A DNA MER2_type -4 232 118 1906 143 3 29 chrX 14838438 14838746 -162135394 + AluJb SINE Alu 1 300 -12 485 299 86 25 chrX 14838775 14838847 -162135293 + MIR SINE MIR 7 73 -189 745 184 77 18 chrX 14838847 14839015 -162135125 - MER5B DNA MER1_type 0 178 1 485 299 86 25 chrX 14839015 14839139 -162135001 + MIR SINE MIR 73 215 -47 326 324 147 15 chrX 14839718 14839854 -162134286 + L2 LINE L2 3118 3271 -1 290 328 41 25 chrX 14839932 14840054 -162134086 + L2 LINE L2 3138 3261 -11 1123 227 152 86 chrX 14840161 14840269 -162133871 + Charlie7 DNA MER1_type 1 100 -2512 1404 120 0 10 chrX 14840269 14840469 -162133671 + L1PB3 LINE L1 5957 6154 0 1123 227 152 86 chrX 14840469 14840618 -162133522 + Charlie7 DNA MER1_type 100 238 -2374 2239 93 0 3 chrX 14840618 14840909 -162133231 + AluSx SINE Alu 10 299 -13 1123 227 152 86 chrX 14840909 14841328 -162132812 + Charlie7 DNA MER1_type 238 723 -1889 404 213 55 18 chrX 14841312 14841476 -162132664 + Charlie7 DNA MER1_type 2411 2580 -32 * 325 362 58 0 chrX 14841870 14842008 -162132132 - MIR SINE MIR -69 193 48 3258 184 87 52 chrX 14842087 14842400 -162131740 - MER6 DNA MER2_type 0 865 565 1296 37 0 43 chrX 14842400 14842564 -162131576 - L1PA5 LINE L1 -1 6153 5997 3258 184 87 52 chrX 14842564 14843085 -162131055 - MER6 DNA MER2_type -300 565 1 912 158 0 0 chrX 14844096 14844229 -162129911 - FLAM_C SINE Alu 0 133 1 2163 104 14 10 chrX 14844574 14844871 -162129269 + AluSx SINE Alu 1 298 -14 480 18 0 0 chrX 14844955 14845012 -162129128 + (TG)n Simple_repeat Simple_repeat 2 58 0 629 313 52 9 chrX 14845029 14845240 -162128900 + L3b LINE CR1 1270 1489 -94 2184 138 0 0 chrX 14845887 14846199 -162127941 - AluSx SINE Alu 0 312 1 1029 252 28 17 chrX 14846625 14846915 -162127225 - L2 LINE L2 -1863 1451 1159 5257 148 33 48 chrX 14846935 14846995 -162127145 - L1MA9 LINE L1 0 6312 6253 2191 102 0 10 chrX 14846995 14847288 -162126852 + AluSx SINE Alu 1 290 -22 5257 148 33 48 chrX 14847288 14848269 -162125871 - L1MA9 LINE L1 -59 6253 5287 5256 89 3 1 chrX 14848631 14849290 -162124850 + PABL_A LTR ERV1 1 660 0 495 257 46 63 chrX 14850070 14850245 -162123895 - MER5A DNA MER1_type -7 182 11 234 0 0 0 chrX 14850289 14850315 -162123825 + (A)n Simple_repeat Simple_repeat 1 26 0 670 72 0 0 chrX 14851016 14851099 -162123041 - AluSg/x SINE Alu -22 290 208 245 151 0 109 chrX 14851100 14851155 -162122985 - Alu SINE Alu -263 37 1 24 0 0 0 chrX 14851502 14851526 -162122614 + AT_rich Low_complexity Low_complexity 1 24 0 2095 141 0 13 chrX 14851534 14851846 -162122294 - AluSx SINE Alu -4 308 1 693 294 42 5 chrX 14852037 14852251 -162121889 - MIR SINE MIR 0 262 41 21 0 0 0 chrX 14852475 14852496 -162121644 + AT_rich Low_complexity Low_complexity 1 21 0 2261 131 117 65 chrX 14853066 14853509 -162120631 - MER31B LTR ERV1 0 466 1 24 0 0 0 chrX 14854370 14854394 -162119746 + AT_rich Low_complexity Low_complexity 1 24 0 196 275 163 25 chrX 14854450 14854530 -162119610 + MIR SINE MIR 61 151 -57 1302 229 12 102 chrX 14854603 14854934 -162119206 - MLT1H LTR MaLR -146 403 113 1973 136 3 0 chrX 14854934 14855228 -162118912 - AluJb SINE Alu -7 305 11 1302 229 12 102 chrX 14855228 14855298 -162118842 - MLT1H LTR MaLR -436 113 38 389 292 9 0 chrX 14855330 14855443 -162118697 + MIR SINE MIR 138 251 -11 2418 88 0 0 chrX 14855772 14856079 -162118061 - AluY SINE Alu -4 307 1 21 89 0 0 chrX 14857008 14857064 -162117076 + AT_rich Low_complexity Low_complexity 1 56 0 201 138 0 0 chrX 14857418 14857447 -162116693 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2403 91 0 0 chrX 14858813 14859120 -162115020 - AluSx SINE Alu -5 307 1 2143 105 7 20 chrX 14860005 14860311 -162113829 - AluSx SINE Alu -10 302 1 2521 194 29 45 chrX 14860762 14861320 -162112820 - MER44D DNA MER2_type -1 604 1 286 276 80 120 chrX 14861399 14861925 -162112215 + L2 LINE L2 1366 1870 -1444 2225 108 0 29 chrX 14862206 14862521 -162111619 + AluSx SINE Alu 1 306 -6 348 278 23 68 chrX 14862736 14862837 -162111303 + MIR3 SINE MIR 59 154 -54 610 162 19 199 chrX 14862837 14862991 -162111149 + MER5B DNA MER1_type 2 108 -70 2270 104 0 3 chrX 14862991 14863289 -162110851 - AluSx SINE Alu -15 297 1 610 162 19 199 chrX 14863289 14863350 -162110790 + MER5B DNA MER1_type 108 178 0 348 278 23 68 chrX 14863350 14863381 -162110759 + MIR3 SINE MIR 154 185 -23 1844 150 13 38 chrX 14864042 14864356 -162109784 - AluJo SINE Alu -6 306 1 1974 158 3 6 chrX 14864823 14865134 -162109006 - AluJb SINE Alu -2 310 1 979 126 0 0 chrX 14865134 14865269 -162108871 - AluJb SINE Alu -177 135 1 2179 102 0 7 chrX 14866257 14866541 -162107599 + AluSx SINE Alu 1 282 -30 210 312 45 52 chrX 14866699 14866853 -162107287 - MER5A DNA MER1_type -23 166 14 610 232 140 0 chrX 14869561 14869725 -162104415 + MER5A DNA MER1_type 3 189 0 613 256 63 5 chrX 14869729 14870136 -162104004 + LTR16C LTR ERVL 42 491 0 755 309 21 4 chrX 14870948 14871184 -162102956 + MIR SINE MIR 3 242 -20 966 167 0 0 chrX 14871431 14871581 -162102559 - FRAM SINE Alu -19 157 8 829 144 7 22 chrX 14871651 14871790 -162102350 - FLAM_C SINE Alu -6 137 1 1022 203 6 0 chrX 14871898 14872075 -162102065 - MER5A DNA MER1_type -6 183 6 381 374 104 14 chrX 14872162 14872418 -162101722 - L3 LINE CR1 -67 1510 1224 2301 119 0 0 chrX 14872418 14872730 -162101410 - AluSx SINE Alu 0 312 1 381 374 104 14 chrX 14872730 14872762 -162101378 - L3 LINE CR1 -353 1224 1196 964 233 5 5 chrX 14872803 14873013 -162101127 - MIR SINE MIR -44 218 9 958 205 22 0 chrX 14873013 14873198 -162100942 + MER5A DNA MER1_type 1 189 0 707 272 47 93 chrX 14873211 14873619 -162100521 - L3 LINE CR1 -428 1149 761 481 257 112 76 chrX 14873661 14873917 -162100223 - L1ME4a LINE L1 -22 6099 5819 2234 92 0 3 chrX 14873917 14874200 -162099940 + AluSx SINE Alu 1 282 -30 481 257 112 76 chrX 14874200 14874390 -162099750 - L1ME4a LINE L1 -302 5819 5637 346 342 80 5 chrX 14874614 14874801 -162099339 - L3 LINE CR1 -979 598 398 421 98 0 0 chrX 14875071 14875132 -162099008 - L1MB5 LINE L1 0 6174 6114 1635 130 8 4 chrX 14875133 14875386 -162098754 + L1MA4A LINE L1 6048 6301 -2 1737 174 16 6 chrX 14875390 14875707 -162098433 - L1MB5 LINE L1 -46 6128 5809 406 272 160 30 chrX 14875974 14876143 -162097997 + MIR SINE MIR 56 246 -16 1215 231 56 92 chrX 14876307 14877115 -162097025 - L1MC5 LINE L1 -25 7936 7252 774 148 55 82 chrX 14877139 14877277 -162096863 + MER5B DNA MER1_type 1 134 -44 2143 125 0 16 chrX 14877277 14877581 -162096559 + AluSx SINE Alu 1 299 -13 774 148 55 82 chrX 14877581 14877625 -162096515 + MER5B DNA MER1_type 134 178 0 1158 201 55 65 chrX 14877636 14878070 -162096070 - L1MC5 LINE L1 -733 7228 6799 2264 126 0 0 chrX 14878485 14878788 -162095352 + AluSx SINE Alu 3 306 -1 198 0 0 0 chrX 14878788 14878810 -162095330 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 826 208 128 42 chrX 14879962 14880290 -162093850 - MLT1H1 LTR MaLR 0 555 185 2425 133 27 27 chrX 14880301 14880715 -162093425 - L1MA7 LINE L1 -9 6282 5869 2342 63 3 30 chrX 14881413 14881714 -162092426 + AluSx SINE Alu 1 293 -19 26 0 0 0 chrX 14882074 14882100 -162092040 + AT_rich Low_complexity Low_complexity 1 26 0 248 152 22 0 chrX 14882100 14882146 -162091994 - MER5B DNA MER1_type -128 50 4 538 207 171 55 chrX 14882160 14882324 -162091816 - MER5A DNA MER1_type 0 189 7 964 233 15 5 chrX 14882331 14882537 -162091603 - MER58A DNA MER1_type 0 224 17 301 325 0 0 chrX 14882531 14882608 -162091532 - MER58A DNA MER1_type -25 82 6 * 26 50 0 0 chrX 14883986 14884026 -162090114 + AT_rich Low_complexity Low_complexity 1 40 0 443 305 30 64 chrX 14884051 14884284 -162089856 + MIR SINE MIR 21 245 -17 978 256 52 21 chrX 14884527 14884816 -162089324 + L1ME3 LINE L1 5834 6131 -31 1993 131 28 0 chrX 14884942 14885232 -162088908 - AluJo SINE Alu -14 298 1 21 0 0 0 chrX 14886071 14886092 -162088048 + AT_rich Low_complexity Low_complexity 1 21 0 258 98 0 0 chrX 14886096 14886137 -162088003 + L1MA3 LINE L1 6265 6305 0 526 294 5 72 chrX 14886352 14886388 -162087752 - MER5A DNA MER1_type -7 182 145 1318 167 19 9 chrX 14886388 14886604 -162087536 + MER20 DNA MER1_type 2 219 0 526 294 5 72 chrX 14886604 14886761 -162087379 - MER5A DNA MER1_type -44 145 2 2099 123 0 0 chrX 14886876 14887160 -162086980 - AluSx SINE Alu -28 284 1 30 45 0 0 chrX 14887656 14887700 -162086440 + AT_rich Low_complexity Low_complexity 1 44 0 752 192 27 20 chrX 14887804 14887950 -162086190 - MER58A DNA MER1_type -1 223 77 360 250 132 0 chrX 14887968 14888104 -162086036 - MER34 LTR ERV1 -14 528 375 250 223 82 52 chrX 14888319 14888464 -162085676 - MER34B LTR ERV1 -434 131 10 344 149 119 30 chrX 14888465 14888532 -162085608 - MER58A DNA MER1_type -34 73 1 2128 128 0 13 chrX 14888819 14889131 -162085009 - AluSx SINE Alu -4 308 1 836 176 0 0 chrX 14889158 14889289 -162084851 + AluSq/x SINE Alu 1 131 -182 183 361 16 0 chrX 14891118 14891179 -162082961 - L2 LINE L2 -21 3292 3231 412 276 0 9 chrX 14891205 14891310 -162082830 + MER58B DNA MER1_type 4 107 -234 835 188 14 0 chrX 14891313 14891441 -162082699 + BC200 scRNA scRNA 2 134 -66 225 0 0 0 chrX 14891441 14891466 -162082674 + (CAA)n Simple_repeat Simple_repeat 2 26 0 835 188 14 0 chrX 14891466 14891481 -162082659 + BC200 scRNA scRNA 134 147 -53 1202 156 34 30 chrX 14891494 14891731 -162082409 + MER58B DNA MER1_type 104 341 0 258 192 0 0 chrX 14891820 14891872 -162082268 - MIR SINE MIR -114 148 97 2728 71 21 63 chrX 14892031 14892215 -162081925 - THE1B LTR MaLR 0 364 203 2346 103 3 3 chrX 14892215 14892526 -162081614 + AluSq SINE Alu 1 311 -2 2728 71 21 63 chrX 14892526 14892721 -162081419 - THE1B LTR MaLR -161 203 1 2109 119 7 14 chrX 14892800 14893095 -162081045 + AluSx SINE Alu 1 293 -19 1003 170 12 0 chrX 14893225 14893390 -162080750 + AluSg/x SINE Alu 132 298 -12 224 289 58 39 chrX 14894488 14894592 -162079548 - MIR SINE MIR -4 258 153 489 275 71 87 chrX 14894637 14894900 -162079240 - MLT1J LTR MaLR -7 504 238 1159 148 81 34 chrX 14894900 14895109 -162079031 + MER20 DNA MER1_type 1 219 0 489 275 71 87 chrX 14895109 14895261 -162078879 - MLT1J LTR MaLR -273 238 95 243 0 0 0 chrX 14895261 14895288 -162078852 + (TTG)n Simple_repeat Simple_repeat 1 27 0 489 275 71 87 chrX 14895288 14895376 -162078764 - MLT1J LTR MaLR -416 95 7 198 269 0 19 chrX 14895382 14895434 -162078706 - MIR SINE MIR -150 112 62 337 192 0 14 chrX 14895801 14895874 -162078266 - LTR33A LTR ERVL -8 515 444 200 125 50 0 chrX 14896592 14896632 -162077508 + T-rich Low_complexity Low_complexity 2 43 0 730 284 63 8 chrX 14897176 14897415 -162076725 - LTR16A1 LTR ERVL -1 456 205 1143 196 9 13 chrX 14897762 14897987 -162076153 - MER58A DNA MER1_type 0 224 1 250 426 33 15 chrX 14898128 14898400 -162075740 + L2 LINE L2 2638 2914 -400 5070 136 31 57 chrX 14898479 14899428 -162074712 - L1MA8 LINE L1 -27 6264 5334 2037 146 0 16 chrX 14899428 14899743 -162074397 - AluJo SINE Alu -2 310 1 5070 136 31 57 chrX 14899743 14899879 -162074261 - L1MA8 LINE L1 -957 5334 5196 237 319 138 9 chrX 14899880 14899996 -162074144 + L2 LINE L2 2957 3087 -185 209 222 0 0 chrX 14900129 14900165 -162073975 + L2 LINE L2 3219 3254 -18 335 339 28 50 chrX 14901362 14901542 -162072598 - MIR SINE MIR -50 212 37 649 270 26 26 chrX 14901678 14901904 -162072236 + MIR SINE MIR 13 238 -24 308 156 31 0 chrX 14902054 14902118 -162072022 - LTR33A LTR ERVL -16 507 442 852 302 36 0 chrX 14902279 14902527 -162071613 + MIR SINE MIR 1 257 -5 1702 118 42 64 chrX 14903025 14903382 -162070758 - THE1C LTR MaLR 0 375 27 428 231 180 55 chrX 14904270 14904746 -162069394 - LTR33A LTR ERVL -20 503 2 266 0 0 29 chrX 14904960 14904995 -162069145 + (TG)n Simple_repeat Simple_repeat 2 35 0 605 62 0 0 chrX 14905449 14905529 -162068611 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chrX 14906380 14906409 -162067731 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chrX 14906449 14906477 -162067663 + AT_rich Low_complexity Low_complexity 1 28 0 2297 106 0 7 chrX 14907297 14907599 -162066541 - AluSx SINE Alu -12 300 1 21 36 0 0 chrX 14907739 14907767 -162066373 + AT_rich Low_complexity Low_complexity 1 28 0 2159 121 10 0 chrX 14908054 14908351 -162065789 + AluSx SINE Alu 1 300 -12 282 56 0 0 chrX 14908351 14908387 -162065753 + (TA)n Simple_repeat Simple_repeat 2 37 0 273 215 84 9 chrX 14908743 14908850 -162065290 - L1ME LINE L1 -289 5877 5763 376 237 102 17 chrX 14910929 14911047 -162063093 - MIR SINE MIR -2 260 133 235 119 0 0 chrX 14911176 14911218 -162062922 - L1MDb LINE L1 -5085 1562 1521 27 29 0 0 chrX 14911238 14911272 -162062868 + AT_rich Low_complexity Low_complexity 1 34 0 2448 72 17 20 chrX 14911276 14911622 -162062518 - L1PB1 LINE L1 -1 6150 5806 613 223 79 66 chrX 14911622 14911940 -162062200 - L1MDb LINE L1 -5214 1332 1011 290 219 13 139 chrX 14912106 14912343 -162061797 - L1MDb LINE L1 -5667 875 669 6017 125 24 3 chrX 14912443 14914284 -162059856 - L1MA3 LINE L1 -10 7714 5308 1811 158 41 12 chrX 14914282 14914541 -162059599 - L1MA3 LINE L1 -7203 362 89 * 270 0 0 0 chrX 14914541 14914571 -162059569 + (TG)n Simple_repeat Simple_repeat 1 30 0 1811 158 41 12 chrX 14914571 14914653 -162059487 - L1MA3 LINE L1 -7476 89 11 352 330 50 28 chrX 14914777 14914995 -162059145 - L1MDb LINE L1 -6304 238 16 246 229 0 136 chrX 14917350 14917468 -162056672 - MER102b DNA MER1_type -8 333 232 822 242 142 96 chrX 14917586 14917705 -162056435 - MLT1F1 LTR MaLR -8 559 447 2266 107 3 0 chrX 14917705 14918004 -162056136 - AluSx SINE Alu -12 300 1 822 242 142 96 chrX 14918004 14918418 -162055722 - MLT1F1 LTR MaLR -120 447 1 2852 198 19 3 chrX 14918995 14919585 -162054555 - MLT1E2 LTR MaLR 0 626 28 311 218 264 0 chrX 14919887 14919997 -162054143 + MIR SINE MIR 119 257 -5 455 210 0 0 chrX 14920227 14920308 -162053832 - FRAM/FAM SINE Alu -97 88 8 588 214 15 8 chrX 14920403 14920534 -162053606 + MER58D DNA MER1_type 1 132 -254 5163 64 16 30 chrX 14920566 14921302 -162052838 - L1MA2 LINE L1 -3 6301 5576 497 129 0 11 chrX 14921310 14921403 -162052737 + MER58 DNA MER1_type 2159 2250 -170 874 157 0 0 chrX 14921403 14921537 -162052603 + FLAM_C SINE Alu 1 134 -9 797 128 104 6 chrX 14921538 14921702 -162052438 + MER58 DNA MER1_type 2241 2420 0 346 219 88 53 chrX 14921750 14921864 -162052276 - MIR3 SINE MIR -25 183 66 25 0 0 28 chrX 14922950 14922970 -162051170 + AT_rich Low_complexity Low_complexity 1 21 -14 1986 144 0 26 chrX 14922970 14923276 -162050864 - AluSx SINE Alu -14 298 1 25 0 0 28 chrX 14923276 14923291 -162050849 + AT_rich Low_complexity Low_complexity 21 35 0 516 268 106 62 chrX 14923296 14923480 -162050660 + L1ME3 LINE L1 5459 5633 -533 803 231 33 6 chrX 14923480 14923662 -162050478 + MER5A DNA MER1_type 3 189 0 516 268 106 62 chrX 14923662 14923865 -162050275 + L1ME3 LINE L1 5633 5863 -303 614 198 23 52 chrX 14924040 14924212 -162049928 + L2 LINE L2 2061 2227 -1087 1363 252 61 32 chrX 14924230 14924706 -162049434 + L2 LINE L2 2574 3061 -252 33 43 0 0 chrX 14925099 14925146 -162048994 + AT_rich Low_complexity Low_complexity 1 47 0 22 35 0 0 chrX 14925395 14925424 -162048716 + AT_rich Low_complexity Low_complexity 1 29 0 517 295 107 17 chrX 14925447 14925896 -162048244 - L1ME3 LINE L1 -211 5951 5452 228 313 68 20 chrX 14926987 14927134 -162047006 + MIR SINE MIR 77 230 -32 2291 95 0 3 chrX 14927260 14927556 -162046584 + AluSx SINE Alu 1 295 -17 800 213 101 41 chrX 14927576 14927843 -162046297 + L1ME3 LINE L1 5836 6123 -39 2013 151 0 7 chrX 14927843 14928142 -162045998 + AluJo SINE Alu 1 297 -15 800 213 101 41 chrX 14928142 14928177 -162045963 + L1ME3 LINE L1 6123 6154 -8 903 153 77 0 chrX 14928294 14928464 -162045676 - MER58A DNA MER1_type 0 224 42 187 342 13 13 chrX 14929083 14929159 -162044981 - MIR3 SINE MIR -21 187 112 1887 223 95 6 chrX 14929217 14929692 -162044448 + MLT1F LTR MaLR 26 542 0 902 240 20 0 chrX 14929747 14929943 -162044197 + MIR SINE MIR 4 203 -59 34 72 0 0 chrX 14929967 14930036 -162044104 + AT_rich Low_complexity Low_complexity 1 69 0 290 139 73 0 chrX 14930036 14930173 -162043967 + (TA)n Simple_repeat Simple_repeat 1 147 0 305 309 64 0 chrX 14930189 14930283 -162043857 + MIR SINE MIR 161 260 -2 184 287 55 118 chrX 14930282 14930648 -162043492 - L2 LINE L2 -92 3180 2838 * 2823 85 3 0 chrX 14930746 14931109 -162043031 - THE1B LTR MaLR 0 364 1 2993 144 48 6 chrX 14931319 14931820 -162042320 + Tigger7 DNA MER2_type 1 522 -1965 443 165 0 25 chrX 14931841 14931920 -162042220 + Tigger7 DNA MER2_type 2411 2487 0 710 284 69 9 chrX 14932015 14932233 -162041907 - MIR SINE MIR -31 231 1 2398 106 0 0 chrX 14932275 14932587 -162041553 + AluSx SINE Alu 1 312 0 2043 124 0 26 chrX 14933125 14933431 -162040709 - AluSx SINE Alu -12 300 3 596 270 93 29 chrX 14934114 14934458 -162039682 - L1ME4a LINE L1 -233 5888 5523 635 192 134 35 chrX 14934804 14934976 -162039164 + MER5A DNA MER1_type 1 189 0 596 207 0 0 chrX 14935029 14935140 -162039000 - MER81 DNA DNA -2 112 2 588 204 62 51 chrX 14935869 14936045 -162038095 - MER5B DNA MER1_type 0 178 1 426 224 7 30 chrX 14936064 14936211 -162037929 - MER5A DNA MER1_type 0 189 4 233 253 242 10 chrX 14936462 14936561 -162037579 + L2 LINE L2 3138 3259 -13 227 129 65 0 chrX 14937589 14937651 -162036489 + (TTA)n Simple_repeat Simple_repeat 2 67 0 676 301 84 35 chrX 14938303 14938649 -162035491 - L2 LINE L2 -5 3308 2946 703 120 7 14 chrX 14939693 14939835 -162034305 - Charlie5 DNA MER1_type -121 2491 2351 1396 56 0 0 chrX 14939835 14940014 -162034126 - L1PA6 LINE L1 0 6154 5976 429 237 84 32 chrX 14940297 14940487 -162033653 - L1MC4a LINE L1 -1914 5894 5695 940 177 44 0 chrX 14940516 14940697 -162033443 + MER5A DNA MER1_type 1 189 0 342 287 104 18 chrX 14941305 14941469 -162032671 - L1MC4a LINE L1 -1829 5979 5802 515 93 6 74 chrX 14941607 14941769 -162032371 + (TCCC)n Simple_repeat Simple_repeat 3 153 0 198 156 0 0 chrX 14941889 14941934 -162032206 + A-rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chrX 14942770 14942803 -162031337 + AT_rich Low_complexity Low_complexity 1 33 0 5326 191 19 9 chrX 14943155 14943637 -162030503 - MER45B DNA AcHobo -545 1036 560 2497 113 23 0 chrX 14943637 14943991 -162030149 - THE1B LTR MaLR 0 364 3 5326 191 19 9 chrX 14943991 14944533 -162029607 - MER45B DNA AcHobo -1021 560 2 191 363 148 13 chrX 14945222 14945539 -162028601 - L2 LINE L2 -342 2972 2613 581 202 8 0 chrX 14945808 14945932 -162028208 - LTR16C LTR ERVL -8 483 359 2198 174 68 33 chrX 14945949 14946431 -162027709 - MLT1D LTR MaLR -6 499 1 1002 246 108 25 chrX 14946432 14946757 -162027383 - LTR16C LTR ERVL -139 352 1 216 295 0 13 chrX 14946909 14946987 -162027153 + MIR3 SINE MIR 132 208 0 324 286 140 35 chrX 14947318 14947489 -162026651 + L3 LINE CR1 985 1173 -404 432 90 0 13 chrX 14947640 14947718 -162026422 - L1MA1 LINE L1 -252 6050 5974 841 314 64 37 chrX 14947762 14948170 -162025970 + L3 LINE CR1 1158 1576 -1 2255 84 3 20 chrX 14948426 14948768 -162025372 - AluSp SINE Alu 0 313 1 221 281 62 42 chrX 14949704 14949800 -162024340 - L2 LINE L2 -47 3266 3169 603 247 152 64 chrX 14949845 14950376 -162023764 - MLT1H LTR MaLR -15 534 1 365 267 0 29 chrX 14950671 14950776 -162023364 - MIR3 SINE MIR -7 201 100 417 263 20 0 chrX 14951128 14951227 -162022913 + U4 snRNA snRNA 3 103 -42 2258 86 0 0 chrX 14951559 14951865 -162022275 - AluSc SINE Alu 0 306 1 225 247 41 41 chrX 14952575 14952648 -162021492 + L2 LINE L2 3234 3306 -7 496 241 129 0 chrX 14953766 14953882 -162020258 + MER5A DNA MER1_type 1 131 -58 792 256 88 17 chrX 14954293 14954531 -162019609 + MIR SINE MIR 8 262 0 270 247 152 124 chrX 14954716 14954894 -162019246 - MIR SINE MIR -78 184 2 1609 177 47 14 chrX 14955411 14955688 -162018452 + AluJo SINE Alu 1 286 -26 260 121 69 69 chrX 14955802 14955860 -162018280 + MIR SINE MIR 7 64 -198 551 226 244 68 chrX 14955893 14955943 -162018197 - LTR16A1 LTR ERVL -9 448 408 2038 122 0 0 chrX 14955943 14956231 -162017909 - AluSx SINE Alu -24 288 1 551 226 244 68 chrX 14956231 14956561 -162017579 - LTR16A1 LTR ERVL -49 408 1 192 202 111 101 chrX 14956561 14956660 -162017480 + MIR SINE MIR 109 208 -54 1826 166 52 75 chrX 14956831 14957272 -162016868 - MLT1D LTR MaLR 0 505 75 450 136 0 0 chrX 14957342 14957408 -162016732 - MLT1D LTR MaLR -431 74 9 1392 202 26 16 chrX 14957431 14957738 -162016402 - MER58B DNA MER1_type -16 325 16 29120 99 16 41 chrX 14960689 14967249 -162006891 - L1PA7 LINE L1 -13 6456 11 1760 169 39 11 chrX 14967308 14967663 -162006477 - MLT1A1 LTR MaLR 0 365 1 1126 206 37 0 chrX 14968504 14968718 -162005422 + MER58A DNA MER1_type 3 224 0 293 130 270 70 chrX 14969822 14969922 -162004218 - MLT1I LTR MaLR -6 403 284 864 72 65 72 chrX 14969952 14970090 -162004050 + AluSx SINE Alu 1 137 -176 31460 104 13 37 chrX 14970091 14976388 -161997752 + L1PA7 LINE L1 12 6147 -7 1342 113 0 0 chrX 14976388 14976573 -161997567 + AluSx SINE Alu 121 305 -7 494 242 0 53 chrX 14976710 14976842 -161997298 - MLT1I LTR MaLR -236 173 49 977 218 97 7 chrX 14979212 14979501 -161994639 + L1ME3 LINE L1 5837 6151 -11 180 299 60 0 chrX 14979642 14979709 -161994431 + MIR SINE MIR 94 164 -98 288 0 0 0 chrX 14981157 14981189 -161992951 + (TG)n Simple_repeat Simple_repeat 2 33 0 321 26 0 0 chrX 14981404 14981442 -161992698 + (TA)n Simple_repeat Simple_repeat 2 39 0 208 373 90 22 chrX 14983663 14983797 -161990343 - L2 LINE L2 -2 3270 3128 2660 43 0 0 chrX 14984268 14984568 -161989572 + AluY SINE Alu 1 300 -11 889 251 136 18 chrX 14984938 14985269 -161988871 - MLT1J2 LTR MaLR -51 399 30 226 290 198 37 chrX 14986368 14986530 -161987610 - MIR SINE MIR -14 248 61 623 275 79 5 chrX 14986763 14986952 -161987188 - MIR SINE MIR -12 250 48 4126 147 29 23 chrX 14987234 14987693 -161986447 - L1MA8 LINE L1 -3 6288 5833 216 0 0 0 chrX 14987693 14987717 -161986423 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2494 21 0 0 chrX 14987717 14988000 -161986140 - AluY SINE Alu -28 283 1 4126 147 29 23 chrX 14988000 14988331 -161985809 - L1MA8 LINE L1 -457 5834 5492 21 0 0 0 chrX 14988569 14988590 -161985550 + AT_rich Low_complexity Low_complexity 1 21 0 325 311 132 55 chrX 14989356 14989591 -161984549 + L2 LINE L2 2720 2972 -342 219 186 0 0 chrX 14989698 14989741 -161984399 + CT-rich Low_complexity Low_complexity 4 46 0 1742 182 0 22 chrX 14989797 14990110 -161984030 + AluJo SINE Alu 1 306 -6 1510 275 104 10 chrX 14990221 14990914 -161983226 - L2 LINE L2 -1 3312 2556 2341 91 3 0 chrX 14991114 14991411 -161982729 - AluSx SINE Alu -13 299 2 376 291 34 30 chrX 14991421 14991686 -161982454 - L1ME LINE L1 -301 5820 5555 1783 152 11 4 chrX 14991910 14992186 -161981954 + AluJb SINE Alu 1 278 -34 207 100 0 0 chrX 14992186 14992216 -161981924 + (TAAG)n Simple_repeat Simple_repeat 2 31 0 3646 65 4 12 chrX 14992333 14992823 -161981317 + L1PA7 LINE L1 5665 6150 -4 2128 189 123 94 chrX 14993348 14993676 -161980464 + L1ME3A LINE L1 5293 5610 -560 315 194 0 0 chrX 14993676 14993743 -161980397 - MER116 DNA Mariner -13 67 1 2128 189 123 94 chrX 14993743 14994201 -161979939 + L1ME3A LINE L1 5610 6170 0 202 304 27 76 chrX 14994380 14994564 -161979576 - L2 LINE L2 -182 3090 2916 * 308 313 138 27 chrX 14994555 14994926 -161979214 - L2 LINE L2 -359 2955 2544 613 307 4 70 chrX 15195857 15196064 -161778076 - L3 LINE CR1 -370 1207 1017 2025 242 42 44 chrX 15196064 15196658 -161777482 - MLT1E LTR MaLR 0 593 1 613 307 4 70 chrX 15196658 15196694 -161777446 - L3 LINE CR1 -560 1017 980 630 266 85 15 chrX 15196732 15196991 -161777149 + L1MEd LINE L1 563 839 -5280 225 125 0 0 chrX 15197062 15197094 -161777046 + U2 snRNA snRNA 1 32 -156 653 247 42 48 chrX 15197101 15197164 -161776976 + L1MEd LINE L1 900 962 -5157 2405 92 0 3 chrX 15197164 15197470 -161776670 + AluSx SINE Alu 1 305 -7 653 247 42 48 chrX 15197470 15197688 -161776452 + L1MEd LINE L1 962 1181 -4938 1630 143 63 66 chrX 15197688 15197989 -161776151 + AluJo SINE Alu 1 300 -12 653 247 42 48 chrX 15197989 15198042 -161776098 + L1MEd LINE L1 1181 1233 -4886 464 244 108 112 chrX 15198136 15198590 -161775550 + LTR33A LTR ERVL 66 517 -6 313 294 196 8 chrX 15198601 15198856 -161775284 + L1MEd LINE L1 1233 1535 -4594 1857 158 6 19 chrX 15199981 15200297 -161773843 + AluJo SINE Alu 1 312 0 3851 94 39 93 chrX 15200317 15200625 -161773515 + MER4A LTR ERV1 1 324 -340 2180 98 3 49 chrX 15200625 15200951 -161773189 - AluSq SINE Alu -2 311 1 3851 94 39 93 chrX 15200951 15201344 -161772796 + MER4A LTR ERV1 324 664 0 467 249 112 78 chrX 15201368 15201726 -161772414 + MLT1I LTR MaLR 40 409 0 451 146 0 10 chrX 15201843 15201939 -161772201 - L1MA8 LINE L1 -5 6286 6192 28 48 0 0 chrX 15201945 15201987 -161772153 + AT_rich Low_complexity Low_complexity 1 42 0 2119 127 0 3 chrX 15202675 15202975 -161771165 + AluSx SINE Alu 1 299 -13 21 95 0 0 chrX 15203173 15203236 -161770904 + AT_rich Low_complexity Low_complexity 1 63 0 845 187 41 0 chrX 15203792 15203963 -161770177 - MER5B DNA MER1_type 0 178 1 352 180 163 38 chrX 15204087 15204270 -161769870 + L1ME2 LINE L1 5843 6095 -69 192 40 0 0 chrX 15204270 15204295 -161769845 + (TA)n Simple_repeat Simple_repeat 1 25 0 352 180 163 38 chrX 15204295 15204363 -161769777 + L1ME2 LINE L1 6095 6153 -11 481 278 172 0 chrX 15205315 15205466 -161768674 - MER5A DNA MER1_type 0 189 13 377 256 91 8 chrX 15205921 15206042 -161768098 + MIR SINE MIR 77 207 -55 549 242 149 12 chrX 15206048 15206209 -161767931 + MER5A DNA MER1_type 7 189 0 1894 166 0 10 chrX 15206213 15206508 -161767632 + AluJo SINE Alu 1 292 -20 679 132 9 0 chrX 15206596 15206702 -161767438 + FLAM_A SINE Alu 1 107 -35 22 0 0 0 chrX 15207509 15207531 -161766609 + AT_rich Low_complexity Low_complexity 1 22 0 823 161 157 80 chrX 15207549 15207848 -161766292 + MER33 DNA MER1_type 3 324 0 924 207 54 10 chrX 15207855 15208058 -161766082 - MER58C DNA MER1_type 0 215 4 918 214 34 40 chrX 15208769 15208909 -161765231 + L1M4 LINE L1 3081 3220 -2926 1982 119 18 0 chrX 15208909 15209238 -161764902 + AluSx SINE Alu 1 334 0 918 214 34 40 chrX 15209238 15209307 -161764833 + L1M4 LINE L1 3220 3288 -2858 1969 150 0 3 chrX 15209307 15209601 -161764539 + AluJb SINE Alu 1 293 -19 918 214 34 40 chrX 15209601 15209739 -161764401 + L1M4 LINE L1 3288 3428 -2718 26 64 0 0 chrX 15209781 15209828 -161764312 + AT_rich Low_complexity Low_complexity 1 47 0 450 157 0 0 chrX 15210347 15210430 -161763710 + CT-rich Low_complexity Low_complexity 1 83 0 21 36 0 0 chrX 15210542 15210570 -161763570 + AT_rich Low_complexity Low_complexity 1 28 0 371 244 24 0 chrX 15211311 15211393 -161762747 - MIR SINE MIR -116 146 63 2276 81 3 0 chrX 15211430 15211746 -161762394 - AluSp SINE Alu 0 317 1 218 345 112 28 chrX 15211969 15212218 -161761922 - L2 LINE L2 -661 2653 2384 429 304 37 5 chrX 15212984 15213201 -161760939 + L1ME4a LINE L1 5600 5823 -298 2129 98 4 0 chrX 15213214 15213491 -161760649 + AluSq SINE Alu 1 278 -35 1984 78 3 54 chrX 15213491 15213785 -161760355 + AluY SINE Alu 33 311 0 413 45 136 0 chrX 15214098 15214164 -161759976 - L1MC1 LINE L1 0 6333 6259 408 110 110 0 chrX 15214167 15214240 -161759900 - L1MC1 LINE L1 -146 6187 6107 469 284 55 70 chrX 15214624 15214821 -161759319 - MIR SINE MIR -2 260 66 2327 33 39 43 chrX 15214821 15215126 -161759014 + AluY SINE Alu 1 304 -7 469 284 55 70 chrX 15215126 15215185 -161758955 - MIR SINE MIR -196 66 8 237 261 190 22 chrX 15215288 15215472 -161758668 + L1ME4a LINE L1 5794 6008 -113 30 0 0 0 chrX 15215552 15215582 -161758558 + AT_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chrX 15218273 15218319 -161755821 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chrX 15218780 15218802 -161755338 + AT_rich Low_complexity Low_complexity 1 22 0 243 132 0 0 chrX 15218989 15219027 -161755113 - MLT2F LTR ERVL -7 656 619 239 265 69 10 chrX 15219211 15219313 -161754827 + HAL1 LINE L1 2253 2360 -147 317 259 86 50 chrX 15219328 15219548 -161754592 + L1MDa LINE L1 2421 2648 -3892 2167 109 0 3 chrX 15220516 15220809 -161753331 - AluSx SINE Alu -20 292 1 1060 45 0 15 chrX 15220809 15220942 -161753198 + AluSg/x SINE Alu 167 297 -15 592 153 17 34 chrX 15223567 15223685 -161750455 + MER20 DNA MER1_type 84 199 -20 1889 170 3 0 chrX 15223685 15223991 -161750149 + AluJb SINE Alu 2 308 -4 869 106 21 42 chrX 15224001 15224143 -161749997 + AluSq/x SINE Alu 1 139 -174 21 36 0 0 chrX 15224244 15224272 -161749868 + AT_rich Low_complexity Low_complexity 1 28 0 557 162 17 34 chrX 15224771 15224888 -161749252 + MER20 DNA MER1_type 85 199 -20 1912 167 3 0 chrX 15224888 15225193 -161748947 + AluJb SINE Alu 2 307 -5 1939 114 10 24 chrX 15225203 15225501 -161748639 + AluSx SINE Alu 1 294 -18 373 276 118 34 chrX 15226233 15226621 -161747519 + L1MC4 LINE L1 5448 5653 -468 860 163 50 19 chrX 15226638 15226798 -161747342 + FRAM SINE Alu 4 168 -8 339 320 129 7 chrX 15227061 15227208 -161746932 - MLT1J LTR MaLR -97 414 250 808 238 9 14 chrX 15227317 15227527 -161746613 + MER63A DNA MER1_type 2 210 0 2424 37 0 20 chrX 15227600 15227900 -161746240 + AluY SINE Alu 1 294 -17 307 221 0 15 chrX 15227925 15227993 -161746147 - L1MCa LINE L1 -4362 2064 1998 * 347 308 0 0 chrX 15227953 15228044 -161746096 + L1MC4 LINE L1 6613 6703 -1339 1904 105 12 53 chrX 15228052 15228375 -161745765 + AluJb SINE Alu 3 312 0 1920 85 4 4 chrX 15229289 15229572 -161744568 - AluSq SINE Alu 0 321 39 1807 167 3 7 chrX 15229616 15229909 -161744231 + AluSx SINE Alu 1 292 -20 1955 145 0 10 chrX 15229945 15230248 -161743892 - AluJb SINE Alu 0 312 13 737 157 0 0 chrX 15231029 15231181 -161742959 - FLAM_C SINE Alu 0 152 1 564 294 116 55 chrX 15231321 15231821 -161742319 + L1M4 LINE L1 4067 4610 -1536 2230 89 40 7 chrX 15231821 15232123 -161742017 + AluSx SINE Alu 1 312 0 564 294 116 55 chrX 15232123 15232207 -161741933 + L1M4 LINE L1 4610 4687 -1459 245 169 13 52 chrX 15232403 15232480 -161741660 + L1M4 LINE L1 4946 5019 -1127 228 143 32 16 chrX 15232481 15232544 -161741596 + L1M4 LINE L1 4967 5030 -1116 2212 99 0 29 chrX 15232702 15233015 -161741125 - AluSg SINE Alu -6 304 1 2052 82 75 0 chrX 15235035 15235314 -161738826 + AluSq SINE Alu 1 300 -13 22 35 0 0 chrX 15236118 15236147 -161737993 + AT_rich Low_complexity Low_complexity 1 29 0 801 230 157 73 chrX 15236448 15237022 -161737118 - L1MC5 LINE L1 -80 7881 7260 703 110 0 0 chrX 15237783 15237883 -161736257 + HY3 scRNA scRNA 1 100 -1 329 209 0 11 chrX 15239025 15239097 -161735043 + (TG)n Simple_repeat Simple_repeat 2 74 -17 2396 69 0 13 chrX 15239097 15239401 -161734739 - AluSx SINE Alu -12 300 1 329 209 0 11 chrX 15239401 15239419 -161734721 + (TG)n Simple_repeat Simple_repeat 74 91 0 250 273 13 39 chrX 15239934 15240011 -161734129 - MIR3 SINE MIR -40 168 94 723 224 97 73 chrX 15240231 15240490 -161733650 + Charlie8 DNA MER1_type 1 265 -2152 181 338 0 15 chrX 15240748 15240816 -161733324 - L2 LINE L2 -79 3193 3127 2235 108 3 7 chrX 15241364 15241669 -161732471 + AluSx SINE Alu 7 310 -2 24 0 0 0 chrX 15241879 15241903 -161732237 + AT_rich Low_complexity Low_complexity 1 24 0 2258 106 0 0 chrX 15242236 15242528 -161731612 + AluSx SINE Alu 1 292 -20 1964 145 54 44 chrX 15244302 15244348 -161729792 - L1MB7 LINE L1 -37 6147 6103 1821 175 3 0 chrX 15244348 15244656 -161729484 - AluJb SINE Alu -3 309 1 1964 145 54 44 chrX 15244656 15245015 -161729125 - L1MB7 LINE L1 -81 6103 5738 2415 78 3 3 chrX 15245023 15245330 -161728810 - AluSq SINE Alu -6 307 1 2285 100 0 0 chrX 15246730 15247030 -161727110 + AluSx SINE Alu 1 300 -12 291 319 129 9 chrX 15249736 15249852 -161724288 + L2 LINE L2 3141 3270 -2 195 42 0 0 chrX 15250864 15250888 -161723252 + (TC)n Simple_repeat Simple_repeat 2 25 0 250 106 21 0 chrX 15251028 15251075 -161723065 - L1MB7 LINE L1 -9 6175 6128 446 279 37 83 chrX 15252076 15252414 -161721726 - L1ME LINE L1 -539 5582 5259 841 185 76 54 chrX 15252416 15252600 -161721540 + MER58A DNA MER1_type 3 190 -34 474 340 54 13 chrX 15252665 15252980 -161721160 - L1ME LINE L1 -882 5264 4937 1219 112 12 6 chrX 15253633 15253802 -161720338 - AluJb SINE Alu -22 290 121 264 30 0 0 chrX 15253802 15253835 -161720305 + (TA)n Simple_repeat Simple_repeat 1 33 0 250 191 0 0 chrX 15253840 15253903 -161720237 - L1MC4 LINE L1 -1339 6703 6641 667 85 23 100 chrX 15253903 15254033 -161720107 - FLAM_C SINE Alu -4 139 20 2508 48 0 16 chrX 15254472 15254785 -161719355 - AluY SINE Alu -3 308 1 314 250 196 0 chrX 15254916 15255064 -161719076 - L1ME LINE L1 -273 5848 5672 246 257 132 7 chrX 15255186 15255330 -161718810 - L1P5 LINE L1 -700 5451 5290 542 158 0 0 chrX 15256437 15256519 -161717621 - L2 LINE L2 -1 3312 3231 269 354 142 0 chrX 15256604 15256731 -161717409 - L2 LINE L2 -554 2760 2616 1866 97 0 0 chrX 15256732 15256969 -161717171 + AluSq SINE Alu 1 237 -76 271 138 15 31 chrX 15456977 15457042 -161517098 + GA-rich Low_complexity Low_complexity 1 64 0 2090 122 7 13 chrX 15457233 15457537 -161516603 - AluJb SINE Alu -10 302 1 1964 145 0 7 chrX 15458467 15458763 -161515377 + AluSx SINE Alu 1 294 -18 483 222 45 37 chrX 15458763 15459006 -161515134 + L1MEd LINE L1 939 1183 -4936 2322 114 0 0 chrX 15459018 15459325 -161514815 + AluSx SINE Alu 1 307 -5 645 169 66 42 chrX 15459325 15459491 -161514649 - L1MC5 LINE L1 -789 7172 7003 338 127 0 32 chrX 15459591 15459654 -161514486 + AluJo SINE Alu 76 136 -166 2415 74 3 3 chrX 15459654 15459963 -161514177 + AluY SINE Alu 1 309 -2 820 170 0 14 chrX 15459977 15460118 -161514022 + FLAM_A SINE Alu 4 142 0 22 35 0 0 chrX 15460162 15460191 -161513949 + AT_rich Low_complexity Low_complexity 1 29 0 2382 93 0 7 chrX 15460191 15460501 -161513639 + AluSc SINE Alu 1 308 -1 1399 212 102 12 chrX 15460515 15460840 -161513300 + LTR16C LTR ERVL 138 491 0 2371 73 0 0 chrX 15461733 15462022 -161512118 + AluY SINE Alu 4 292 -19 889 161 94 0 chrX 15462033 15462182 -161511958 + FAM SINE Alu 1 163 -12 1114 136 20 40 chrX 15462760 15462959 -161511181 - AluJo SINE Alu -117 195 1 2283 115 0 10 chrX 15463534 15463848 -161510292 - AluSx SINE Alu -1 311 1 287 260 104 10 chrX 15464724 15464820 -161509320 - L2 LINE L2 -12 3301 3197 2189 133 3 0 chrX 15464893 15465194 -161508946 + AluSg SINE Alu 1 302 -8 2049 133 3 13 chrX 15465644 15465946 -161508194 + AluSx SINE Alu 1 299 -13 966 212 39 80 chrX 15465964 15466327 -161507813 + L1MC4 LINE L1 7695 8042 0 2626 52 3 0 chrX 15466866 15467171 -161506969 - AluY SINE Alu -5 306 1 291 258 65 11 chrX 15467171 15467264 -161506876 - MER5A DNA MER1_type -33 156 59 447 177 93 13 chrX 15467567 15467722 -161506418 + L1ME3A LINE L1 5944 6151 -19 2189 131 17 12 chrX 15467724 15468068 -161506072 + MER47A DNA MER2_type 21 366 0 387 332 107 21 chrX 15468145 15468434 -161505706 + L2 LINE L2 1871 2202 -1112 2242 119 0 0 chrX 15468434 15468737 -161505403 - AluSx SINE Alu -9 303 1 387 332 107 21 chrX 15468737 15468830 -161505310 + L2 LINE L2 2202 2286 -1028 203 181 7 43 chrX 15469021 15469159 -161504981 + (TA)n Simple_repeat Simple_repeat 1 133 0 1143 121 6 12 chrX 15469300 15469466 -161504674 - AluSq SINE Alu -17 296 132 1974 94 0 22 chrX 15469467 15469743 -161504397 - AluSx SINE Alu -16 296 27 1955 84 4 0 chrX 15469743 15469994 -161504146 + AluY SINE Alu 45 296 -15 295 54 0 0 chrX 15469994 15470031 -161504109 - AluSx SINE Alu -266 37 1 2149 70 23 50 chrX 15470348 15470670 -161503470 + AluY SINE Alu 1 311 0 2288 112 0 10 chrX 15470772 15471084 -161503056 - AluSq SINE Alu -4 309 1 2169 94 57 13 chrX 15471341 15471640 -161502500 - AluSx SINE Alu 0 312 1 2173 116 7 3 chrX 15471726 15472029 -161502111 + AluSq SINE Alu 1 304 -9 2082 93 31 10 chrX 15472075 15472364 -161501776 + AluSx SINE Alu 1 295 -17 3594 70 36 0 chrX 15472406 15472880 -161501260 + L1PA8 LINE L1 5680 6170 -2 21 0 0 0 chrX 15473079 15473100 -161501040 + AT_rich Low_complexity Low_complexity 1 21 0 2319 96 0 0 chrX 15473200 15473492 -161500648 + AluSg SINE Alu 1 292 -18 275 200 17 0 chrX 15473496 15473556 -161500584 + L1ME4a LINE L1 5994 6054 -67 330 234 62 125 chrX 15473597 15473789 -161500351 + MARNA DNA Mariner 345 524 -62 1643 169 4 11 chrX 15473878 15474151 -161499989 - AluJo SINE Alu -39 273 3 2075 118 0 23 chrX 15474917 15475223 -161498917 + AluJb SINE Alu 1 299 -13 2119 140 0 13 chrX 15475306 15475614 -161498526 - AluJb SINE Alu -8 304 1 228 268 55 87 chrX 15477486 15477603 -161496537 - MIR SINE MIR -55 207 97 2084 133 0 3 chrX 15477603 15477911 -161496229 + AluSx SINE Alu 1 307 -5 228 268 55 87 chrX 15477911 15477976 -161496164 - MIR SINE MIR -165 97 31 510 256 58 0 chrX 15478912 15479084 -161495056 - MIR SINE MIR 0 262 81 207 267 164 26 chrX 15479116 15479232 -161494908 + L2 LINE L2 2917 3048 -224 676 173 23 8 chrX 15479290 15479423 -161494717 - MER5B DNA MER1_type -43 135 1 189 247 52 26 chrX 15479646 15479723 -161494417 + L2 LINE L2 3234 3312 -1 2239 101 0 7 chrX 15480299 15480597 -161493543 + AluSg SINE Alu 1 296 -14 181 138 0 0 chrX 15480609 15480638 -161493502 + MER5A DNA MER1_type 78 106 -83 616 216 135 18 chrX 15480680 15480902 -161493238 - MER20B DNA MER1_type 0 783 536 481 229 209 46 chrX 15481357 15481716 -161492424 + MLT1L LTR MaLR 8 307 -308 2514 57 7 0 chrX 15481716 15482016 -161492124 - AluY SINE Alu -9 302 1 481 229 209 46 chrX 15482016 15482131 -161492009 + MLT1L LTR MaLR 307 608 -7 2188 83 3 14 chrX 15482317 15482641 -161491499 + AluSg SINE Alu 1 321 0 229 302 58 0 chrX 15482717 15482803 -161491337 + L2 LINE L2 2969 3059 -213 1564 170 84 33 chrX 15482803 15483162 -161490978 - Charlie4a DNA MER1_type 0 508 132 340 184 113 71 chrX 15483304 15483517 -161490623 + MLT1H LTR MaLR 232 549 0 491 200 27 127 chrX 15483517 15483667 -161490473 - Charlie4a DNA MER1_type -373 135 1 183 367 0 25 chrX 15483752 15483831 -161490309 + L2 LINE L2 3234 3310 -3 191 293 0 0 chrX 15483843 15483884 -161490256 + L2 LINE L2 3137 3177 -95 617 181 156 0 chrX 15483894 15484054 -161490086 - MIR SINE MIR -34 228 44 604 293 76 0 chrX 15485630 15485855 -161488285 - MIR SINE MIR -6 256 15 1171 165 58 9 chrX 15485987 15486211 -161487929 - MER90 LTR ERV1 0 614 380 368 200 211 0 chrX 15486209 15486299 -161487841 - MER90 LTR ERV1 -505 109 1 * 1784 150 150 17 chrX 15486432 15486853 -161487287 + Charlie4a DNA MER1_type 32 508 0 485 231 75 8 chrX 15486943 15487077 -161487063 - MIR3 SINE MIR -13 195 53 223 217 100 0 chrX 15487105 15487165 -161486975 - L2 LINE L2 -47 3225 3160 190 315 45 9 chrX 15487176 15487287 -161486853 - L2 LINE L2 -580 2734 2620 296 270 127 53 chrX 15487775 15487964 -161486176 - MIR SINE MIR -40 222 20 2459 90 0 3 chrX 15487967 15488278 -161485862 - AluSx SINE Alu -2 310 1 2332 98 0 0 chrX 15489165 15489462 -161484678 - AluY SINE Alu -14 297 1 1748 123 36 22 chrX 15489687 15489963 -161484177 + AluSg SINE Alu 6 285 -25 232 222 19 0 chrX 15489971 15490025 -161484115 + L1MC/D LINE L1 5599 5653 -468 237 291 87 24 chrX 15490027 15490154 -161483986 + L1MC/D LINE L1 5679 5813 -1995 1222 132 0 0 chrX 15490390 15490564 -161483576 - AluSg/x SINE Alu -10 302 129 1227 87 136 16 chrX 15491519 15491703 -161482437 + AluSg/x SINE Alu 76 281 -31 2238 108 3 0 chrX 15491910 15492207 -161481933 - AluSx SINE Alu -14 298 1 668 279 8 59 chrX 15492280 15492425 -161481715 + MIR SINE MIR 20 171 -91 2072 89 8 0 chrX 15492425 15492683 -161481457 + AluSp SINE Alu 1 260 -53 2246 76 3 7 chrX 15492683 15492970 -161481170 + AluSg SINE Alu 9 295 -15 668 279 8 59 chrX 15492970 15493060 -161481080 + MIR SINE MIR 169 244 -18 695 294 0 0 chrX 15493102 15493255 -161480885 - L2 LINE L2 -4 3268 3116 262 318 0 18 chrX 15493312 15493422 -161480718 - MIR SINE MIR -71 137 30 22 56 0 0 chrX 15494388 15494424 -161479716 + AT_rich Low_complexity Low_complexity 1 36 0 2389 98 0 0 chrX 15494429 15494725 -161479415 + AluSx SINE Alu 1 296 -16 2274 99 0 0 chrX 15494874 15495157 -161478983 + AluSx SINE Alu 1 283 -29 2356 103 0 0 chrX 15495497 15495799 -161478341 - AluSq SINE Alu -10 303 2 1943 45 0 9 chrX 15495915 15496161 -161477979 - AluY SINE Alu 0 307 64 14268 85 14 43 chrX 15496170 15498309 -161475831 - L1M1 LINE L1 -3938 3627 1550 2445 68 7 0 chrX 15498692 15498988 -161475152 + AluSq SINE Alu 1 298 -15 1595 171 0 41 chrX 15499763 15500055 -161474085 - AluSx SINE Alu -3 309 30 562 309 78 0 chrX 15500057 15500174 -161473966 - MIR SINE MIR -16 246 140 2395 97 3 0 chrX 15500174 15500482 -161473658 + AluSx SINE Alu 1 309 -3 562 309 78 0 chrX 15500482 15500581 -161473559 - MIR SINE MIR -122 140 13 1748 115 19 27 chrX 15501476 15501737 -161472403 + AluSx SINE Alu 41 299 -13 1158 61 0 0 chrX 15501761 15501893 -161472247 + AluSq/x SINE Alu 12 143 -170 1954 118 7 0 chrX 15501893 15502165 -161471975 + AluSg SINE Alu 25 298 -12 2162 106 0 3 chrX 15502384 15502704 -161471436 - AluSx SINE Alu 0 319 1 1349 54 0 0 chrX 15502740 15502906 -161471234 + L1PA4 LINE L1 5987 6152 -3 2287 128 0 0 chrX 15503417 15503729 -161470411 - AluSx SINE Alu 0 312 1 2530 80 0 0 chrX 15503858 15504170 -161469970 - AluSx SINE Alu 0 312 1 2252 93 3 0 chrX 15504820 15505111 -161469029 + AluY SINE Alu 1 292 -19 210 37 0 0 chrX 15505570 15505597 -161468543 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1624 77 0 30 chrX 15505663 15505896 -161468244 - L1PA13 LINE L1 0 6163 5938 1545 150 23 4 chrX 15505886 15506146 -161467994 - L1MB5 LINE L1 -20 6154 5890 586 159 9 44 chrX 15506153 15506266 -161467874 + L1MB7 LINE L1 6015 6123 -61 2460 77 0 7 chrX 15506266 15506564 -161467576 - AluSq SINE Alu -17 296 1 8041 106 15 15 chrX 15506564 15507221 -161466919 + Tigger1 DNA MER2_type 46 705 -1713 2532 61 0 0 chrX 15507221 15507517 -161466623 + AluY SINE Alu 16 311 0 8041 106 15 15 chrX 15507517 15507998 -161466142 + Tigger1 DNA MER2_type 704 1184 -1234 2523 65 3 3 chrX 15507999 15508308 -161465832 + AluY SINE Alu 3 311 0 809 115 25 16 chrX 15508308 15508430 -161465710 + Tigger1 DNA MER2_type 1467 1589 -829 1517 139 124 33 chrX 15508430 15508704 -161465436 + AluJo SINE Alu 1 299 -13 1077 92 0 0 chrX 15508704 15508845 -161465295 + Tigger1 DNA MER2_type 2086 2226 -192 670 212 0 0 chrX 15508845 15508977 -161465163 - FLAM_C SINE Alu -10 133 2 1146 125 52 5 chrX 15508980 15509172 -161464968 + Tigger1 DNA MER2_type 2218 2418 0 377 260 92 46 chrX 15509433 15509606 -161464534 - MIR SINE MIR -18 244 64 700 186 8 0 chrX 15509671 15509789 -161464351 - Tigger6a DNA MER2_type -8 1075 957 752 157 0 0 chrX 15509789 15509904 -161464236 + FLAM_A SINE Alu 20 134 -8 4228 153 47 34 chrX 15509907 15510068 -161464072 - Tigger6a DNA MER2_type -636 961 804 567 71 71 0 chrX 15510068 15510153 -161463987 + L1MB8 LINE L1 6088 6178 0 4228 153 47 34 chrX 15510153 15510793 -161463347 - Tigger6a DNA MER2_type -793 804 149 2506 72 0 0 chrX 15510797 15511089 -161463051 + AluSx SINE Alu 1 292 -20 849 142 0 8 chrX 15511098 15511232 -161462908 + FLAM_C SINE Alu 1 133 0 371 167 11 0 chrX 15511263 15511353 -161462787 + (TG)n Simple_repeat Simple_repeat 2 92 0 1168 134 88 10 chrX 15511642 15511691 -161462449 + AluJo SINE Alu 86 130 -182 2133 89 41 24 chrX 15511691 15511983 -161462157 + AluSq SINE Alu 1 297 -16 1168 134 88 10 chrX 15511983 15512127 -161462013 + AluJo SINE Alu 130 294 -18 193 300 33 0 chrX 15512399 15512459 -161461681 - L2 LINE L2 -212 3060 2999 1899 129 50 0 chrX 15512493 15512660 -161461480 - AluSx SINE Alu -20 292 104 1207 22 0 0 chrX 15512660 15512798 -161461342 - L1PA5 LINE L1 -3 6151 6014 1899 129 50 0 chrX 15512798 15512908 -161461232 - AluSx SINE Alu -208 104 1 2352 100 6 3 chrX 15512939 15513250 -161460890 - AluSx SINE Alu 0 312 1 2422 82 0 0 chrX 15513863 15514155 -161459985 - AluSg SINE Alu -18 292 1 1567 238 79 41 chrX 15515163 15515497 -161458643 - LTR16C LTR ERVL -5 486 129 2380 92 3 3 chrX 15515497 15515803 -161458337 - AluSp SINE Alu -1 312 7 1567 238 79 41 chrX 15515803 15515909 -161458231 - LTR16C LTR ERVL -362 129 29 2340 74 7 14 chrX 15515974 15516270 -161457870 - AluSx SINE Alu -16 296 3 577 263 83 0 chrX 15518694 15518850 -161455290 - MLT1J LTR MaLR -338 173 5 471 249 136 37 chrX 15518925 15519070 -161455070 - L1ME4a LINE L1 -76 6045 5916 2354 85 10 0 chrX 15519070 15519376 -161454764 - AluSp SINE Alu -4 309 1 471 249 136 37 chrX 15519376 15519584 -161454556 - L1ME4a LINE L1 -205 5916 5657 * 482 323 0 6 chrX 15519568 15519732 -161454408 - L1MEc LINE L1 -3311 3071 2909 499 130 0 0 chrX 15519741 15519810 -161454330 - AluJ/FLAM SINE Alu -241 71 3 363 217 7 94 chrX 15519811 15519849 -161454291 - L1MEc LINE L1 -3755 2627 2587 2411 86 3 13 chrX 15519849 15520164 -161453976 - AluSx SINE Alu 0 312 1 363 217 7 94 chrX 15520164 15520263 -161453877 - L1MEc LINE L1 -3795 2587 2502 1206 230 143 28 chrX 15520268 15520659 -161453481 + MLT1J2 LTR MaLR 1 436 -14 339 269 66 70 chrX 15520686 15520913 -161453227 - L1MEc LINE L1 -3888 2496 2271 2023 132 3 13 chrX 15520961 15521264 -161452876 - AluSx SINE Alu -12 300 1 500 261 90 26 chrX 15521468 15521778 -161452362 - L1MEc LINE L1 -4640 1923 1594 762 259 75 50 chrX 15521844 15521953 -161452187 - L1MEc LINE L1 -5767 605 500 2234 78 20 10 chrX 15521953 15522246 -161451894 + AluSq SINE Alu 1 296 -17 762 259 75 50 chrX 15522246 15522456 -161451684 - L1MEc LINE L1 -5872 500 278 291 310 0 10 chrX 15522502 15522602 -161451538 - L1ME4a LINE L1 -458 5663 5565 3155 242 72 42 chrX 15522866 15523240 -161450900 + HAL1 LINE L1 2 363 -2144 2454 148 16 69 chrX 15523240 15523733 -161450407 + MLT1C LTR MaLR 1 467 0 3155 242 72 42 chrX 15523733 15524163 -161449977 + HAL1 LINE L1 363 844 -1663 2349 107 0 3 chrX 15524163 15524472 -161449668 + AluSx SINE Alu 1 308 -4 3155 242 72 42 chrX 15524472 15524662 -161449478 + HAL1 LINE L1 844 1027 -1480 2362 94 10 0 chrX 15524665 15524973 -161449167 + AluSp SINE Alu 1 311 -2 1715 151 7 56 chrX 15525068 15525372 -161448768 + AluJb SINE Alu 1 289 -23 2627 232 104 44 chrX 15525426 15525708 -161448432 + HAL1 LINE L1 1398 1662 -845 2547 56 0 0 chrX 15525708 15526010 -161448130 + AluY SINE Alu 1 302 -9 2627 232 104 44 chrX 15526010 15526566 -161447574 + HAL1 LINE L1 1662 2302 -205 1856 148 84 29 chrX 15526566 15526911 -161447229 - MLT1A1 LTR MaLR 0 365 2 2627 232 104 44 chrX 15526911 15527025 -161447115 + HAL1 LINE L1 2302 2408 -99 966 123 24 194 chrX 15527174 15527241 -161446899 - MER63 DNA MER1_type -43 1017 940 1948 153 0 10 chrX 15527241 15527541 -161446599 + AluJb SINE Alu 1 297 -15 966 123 24 194 chrX 15527541 15527708 -161446432 - MER63 DNA MER1_type -120 940 856 2301 93 7 0 chrX 15527708 15527999 -161446141 - AluSq SINE Alu -20 293 1 966 123 24 194 chrX 15527999 15528104 -161446036 - MER63 DNA MER1_type -204 856 735 333 308 77 20 chrX 15528135 15528330 -161445810 - L1ME3A LINE L1 -3 6167 5962 622 184 77 46 chrX 15528409 15528605 -161445535 - L1MC5 LINE L1 -430 7531 7330 2117 142 3 0 chrX 15528618 15528927 -161445213 - AluJb SINE Alu -2 310 1 2058 119 6 49 chrX 15529456 15529783 -161444357 + AluSq SINE Alu 1 313 0 1388 249 22 78 chrX 15531115 15531614 -161442526 + LTR16C LTR ERVL 13 483 -8 196 264 11 69 chrX 15531849 15531936 -161442204 + MIR3 SINE MIR 116 197 -11 426 153 0 0 chrX 15531939 15532011 -161442129 + L1M4 LINE L1 3571 3642 -2504 766 236 48 5 chrX 15532012 15532202 -161441938 + L1MD3 LINE L1 7571 7751 -231 1906 94 76 4 chrX 15532202 15532477 -161441663 - AluSx SINE Alu -17 295 1 766 236 48 5 chrX 15532477 15532499 -161441641 + L1MD3 LINE L1 7751 7981 -1 234 262 84 49 chrX 15533179 15533309 -161440831 - L1M4 LINE L1 -3734 2412 2288 2419 81 0 0 chrX 15533309 15533604 -161440536 - AluSx SINE Alu -17 295 1 234 262 84 49 chrX 15533604 15533736 -161440404 - L1M4 LINE L1 -3858 2288 2141 1782 132 62 4 chrX 15533823 15534095 -161440045 - AluJo SINE Alu -24 288 1 2526 56 0 3 chrX 15534390 15534692 -161439448 - AluY SINE Alu -9 302 2 2464 86 0 3 chrX 15534938 15535251 -161438889 + AluSx SINE Alu 1 312 0 2207 95 3 3 chrX 15535253 15535548 -161438592 + AluY SINE Alu 1 295 -16 21 71 0 0 chrX 15535840 15535882 -161438258 + AT_rich Low_complexity Low_complexity 1 42 0 3477 204 33 18 chrX 15536039 15537131 -161437009 - L1ME1 LINE L1 -5 6144 4850 2341 82 17 0 chrX 15537131 15537424 -161436716 + AluSp SINE Alu 1 298 -15 3477 204 33 18 chrX 15537424 15537745 -161436395 - L1ME1 LINE L1 -1299 4850 4535 2132 204 121 31 chrX 15537745 15538289 -161435851 - MLT1E LTR MaLR 0 593 1 1766 213 52 2 chrX 15538289 15538716 -161435424 - L1ME1 LINE L1 -1590 4539 4092 2224 112 7 0 chrX 15538727 15539022 -161435118 - AluSx SINE Alu -14 298 2 2421 91 3 0 chrX 15539089 15539397 -161434743 - AluSp SINE Alu -3 310 2 246 32 0 0 chrX 15539399 15539430 -161434710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2245 95 0 3 chrX 15539431 15539715 -161434425 - AluSq SINE Alu -30 283 1 333 207 26 69 chrX 15539748 15539864 -161434276 - L1ME1 LINE L1 -4730 1580 1470 675 235 68 51 chrX 15539891 15540010 -161434130 - L1ME1 LINE L1 -4862 1257 1142 1986 130 33 3 chrX 15540010 15540310 -161433830 - AluJb SINE Alu -3 309 1 675 235 68 51 chrX 15540310 15540569 -161433571 - L1ME1 LINE L1 -4977 1142 939 1991 142 0 7 chrX 15540569 15540865 -161433275 - AluSx SINE Alu -18 294 1 303 312 129 53 chrX 15540868 15541279 -161432861 - L1ME1 LINE L1 -5269 850 472 1867 109 98 0 chrX 15541279 15541553 -161432587 - AluSx SINE Alu -11 301 1 303 312 129 53 chrX 15541553 15541840 -161432300 - L1ME1 LINE L1 -5647 472 82 2089 135 0 0 chrX 15541840 15542145 -161431995 + AluSx SINE Alu 3 307 0 303 312 129 53 chrX 15542145 15542233 -161431907 - L1ME1 LINE L1 -6037 82 2 1236 219 148 23 chrX 15542394 15542778 -161431362 - LTR16A LTR ERVL 0 450 19 355 280 23 21 chrX 15542924 15543038 -161431102 - MLT1J LTR MaLR -301 210 110 230 250 21 0 chrX 15542995 15543043 -161431097 - LTR67 LTR ERVL -400 157 109 * 240 265 0 48 chrX 15543089 15543136 -161431004 - MLT1L LTR MaLR -536 79 36 2504 75 7 0 chrX 15543136 15543444 -161430696 + AluSp SINE Alu 1 310 -3 240 265 0 48 chrX 15543444 15543479 -161430661 - MLT1L LTR MaLR -579 36 1 1058 163 54 15 chrX 15543555 15543758 -161430382 - THE1C LTR MaLR 0 364 154 952 89 0 0 chrX 15543759 15543883 -161430257 + AluSc SINE Alu 173 296 -13 1158 108 13 0 chrX 15543885 15544042 -161430098 - THE1C LTR MaLR -213 162 4 11877 78 15 12 chrX 15544045 15544356 -161429784 - THE1B-int LTR MaLR 0 1580 1271 2295 87 3 7 chrX 15544356 15544655 -161429485 - AluSc SINE Alu -11 298 1 11877 78 15 12 chrX 15544655 15545918 -161428222 - THE1B-int LTR MaLR -309 1271 1 1931 145 73 20 chrX 15545918 15546262 -161427878 - THE1B LTR MaLR 0 364 3 633 282 110 9 chrX 15546263 15546582 -161427558 - L1ME LINE L1 -368 5753 5403 2007 125 43 0 chrX 15546787 15547068 -161427072 - AluSg SINE Alu -17 293 1 2494 57 7 3 chrX 15548134 15548430 -161425710 - AluY SINE Alu -14 297 1 451 153 140 113 chrX 15548457 15548607 -161425533 + L1MC4 LINE L1 6767 7010 -1032 2246 116 0 3 chrX 15548610 15548921 -161425219 + AluSx SINE Alu 1 310 -2 2951 94 32 5 chrX 15549107 15549541 -161424599 - L1MA4A LINE L1 -6 6297 5852 314 143 0 0 chrX 15549758 15549807 -161424333 - AluJo SINE Alu -2 300 252 1162 160 0 5 chrX 15549811 15549998 -161424142 - AluJo SINE Alu -126 186 1 256 218 77 0 chrX 15550069 15550147 -161423993 + L1MC4 LINE L1 6619 6702 -1340 231 291 47 0 chrX 15550072 15550158 -161423982 - L1MC4 LINE L1 -1339 6703 6614 * 227 122 0 0 chrX 15550167 15550208 -161423932 - LTR66 LTR ERVL -172 438 398 225 170 0 0 chrX 15550231 15550278 -161423862 + LTR66 LTR ERVL 395 441 -169 2469 65 0 13 chrX 15550293 15550599 -161423541 - AluY SINE Alu -9 302 1 502 220 148 94 chrX 15550625 15550801 -161423339 + MIR SINE MIR 10 175 -87 2375 40 0 53 chrX 15550801 15551103 -161423037 + AluY SINE Alu 1 286 -25 198 0 0 0 chrX 15551110 15551132 -161423008 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 502 220 148 94 chrX 15551132 15551170 -161422970 + MIR SINE MIR 180 244 -18 339 287 43 0 chrX 15551195 15551310 -161422830 - HAL1b LINE L1 -819 529 410 408 194 112 0 chrX 15551327 15551425 -161422715 + MIR SINE MIR 5 113 -149 359 251 131 71 chrX 15551594 15551861 -161422279 + MLT1K LTR MaLR 185 467 -121 256 302 10 0 chrX 15551879 15551975 -161422165 + MIR SINE MIR 159 255 -7 2187 108 3 3 chrX 15552034 15552341 -161421799 + AluSx SINE Alu 1 307 -5 286 239 0 30 chrX 15552374 15552441 -161421699 - HAL1b LINE L1 -1062 286 222 182 235 39 0 chrX 15552547 15552598 -161421542 + L2 LINE L2 2094 2146 -1168 330 271 167 21 chrX 15552885 15553029 -161421111 + MER5A DNA MER1_type 25 189 0 2379 85 0 0 chrX 15553089 15553382 -161420758 - AluSx SINE Alu -19 293 1 2404 74 7 0 chrX 15553501 15553800 -161420340 - AluY SINE Alu -10 301 1 299 188 71 12 chrX 15554266 15554351 -161419789 - MIR SINE MIR -56 206 117 765 337 77 41 chrX 15554514 15554662 -161419478 + L2 LINE L2 2208 2349 -965 2113 96 56 88 chrX 15554662 15555038 -161419102 - THE1B LTR MaLR 0 364 1 765 337 77 41 chrX 15555038 15555372 -161418768 + L2 LINE L2 2349 2669 -645 1506 171 3 11 chrX 15555372 15555659 -161418481 + AluJb SINE Alu 1 285 -27 765 337 77 41 chrX 15555659 15555670 -161418470 + L2 LINE L2 2669 2678 -636 2080 62 29 7 chrX 15555670 15555981 -161418159 + AluSx SINE Alu 1 317 0 765 337 77 41 chrX 15555981 15556196 -161417944 + L2 LINE L2 2678 2916 -398 1758 123 14 11 chrX 15556197 15556482 -161417658 - AluSg SINE Alu -24 286 1 2074 127 0 13 chrX 15557041 15557357 -161416783 + AluSx SINE Alu 1 312 0 356 239 36 90 chrX 15557378 15557470 -161416670 + L1ME4a LINE L1 5745 5840 -281 2237 85 7 0 chrX 15557470 15557764 -161416376 + AluSx SINE Alu 7 302 -10 450 29 44 0 chrX 15557764 15557832 -161416308 + (TA)n Simple_repeat Simple_repeat 2 72 0 356 239 36 90 chrX 15557832 15557905 -161416235 + L1ME4a LINE L1 5838 5902 -219 676 183 75 116 chrX 15557928 15558196 -161415944 - L1M4b LINE L1 -5394 1465 1209 696 289 43 67 chrX 15558255 15558646 -161415494 - L1M4b LINE L1 -5676 1179 798 692 278 39 50 chrX 15558695 15558976 -161415164 - L1M4b LINE L1 -6581 278 1 1983 104 55 0 chrX 15559008 15559297 -161414843 + AluSq SINE Alu 1 305 -8 293 175 35 0 chrX 15559460 15559517 -161414623 - FAM SINE Alu 0 179 121 1314 276 60 13 chrX 15609531 15609911 -161364229 + L1M4 LINE L1 8 405 -6141 2120 119 0 0 chrX 15609916 15610194 -161363946 + AluSx SINE Alu 1 278 -34 225 0 0 0 chrX 15610197 15610222 -161363918 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1860 191 70 34 chrX 15610223 15610720 -161363420 + L1M4 LINE L1 730 1244 -5302 1937 144 0 7 chrX 15610720 15611011 -161363129 + AluSx SINE Alu 1 289 -23 293 111 37 0 chrX 15611635 15611689 -161362451 + GA-rich Low_complexity Low_complexity 3 58 0 669 221 32 29 chrX 15611689 15611915 -161362225 + L1M4 LINE L1 1393 2025 -4540 359 169 28 0 chrX 15611883 15611968 -161362172 + L1M4 LINE L1 4951 5037 -1607 * 738 215 151 16 chrX 15611971 15612157 -161361983 + MIR SINE MIR 23 233 -29 344 252 80 40 chrX 15612157 15612308 -161361832 - HAL1b LINE L1 -819 529 410 441 194 112 0 chrX 15612325 15612423 -161361717 + MIR SINE MIR 5 113 -149 344 255 131 71 chrX 15612592 15612859 -161361281 + MLT1K LTR MaLR 185 467 -121 286 302 10 0 chrX 15612877 15612973 -161361167 + MIR SINE MIR 159 255 -7 2135 111 3 3 chrX 15613032 15613339 -161360801 + AluSx SINE Alu 1 307 -5 289 239 0 30 chrX 15613372 15613439 -161360701 - HAL1b LINE L1 -1062 286 222 199 235 39 0 chrX 15613545 15613596 -161360544 + L2 LINE L2 2094 2146 -1168 331 263 188 23 chrX 15613887 15614020 -161360120 + MER5A DNA MER1_type 29 183 -6 29 28 0 0 chrX 15614194 15614230 -161359910 + AT_rich Low_complexity Low_complexity 1 36 0 1065 214 134 17 chrX 15614801 15615091 -161359049 + MER5C DNA MER1_type 1 324 0 344 294 46 51 chrX 15615092 15615289 -161358851 + L1M4b LINE L1 3275 3470 -3174 960 196 6 0 chrX 15615292 15615465 -161358675 + AluJb SINE Alu 137 310 -2 2315 91 3 0 chrX 15615587 15615884 -161358256 - AluSx SINE Alu -14 298 1 250 275 22 44 chrX 15615910 15616001 -161358139 - MLT1J LTR MaLR -41 470 382 1622 172 13 20 chrX 15616138 15616440 -161357700 + AluJb SINE Alu 1 300 -12 323 300 88 31 chrX 15616458 15616618 -161357522 - MLT1J LTR MaLR -342 169 1 230 300 43 73 chrX 15616630 15617218 -161356922 + L1M4b LINE L1 3595 4164 -2480 1854 150 7 10 chrX 15617218 15617551 -161356589 + AluJb SINE Alu 1 312 0 230 300 43 73 chrX 15617551 15617595 -161356545 + L1M4b LINE L1 4164 4208 -2436 2120 95 0 41 chrX 15617623 15617938 -161356202 - AluSx SINE Alu -10 302 1 180 0 0 0 chrX 15617946 15617966 -161356174 + (T)n Simple_repeat Simple_repeat 1 20 0 2043 161 119 5 chrX 15617966 15618344 -161355796 + LOR1b LTR ERV1 41 461 0 1856 123 29 13 chrX 15618344 15618653 -161355487 + LOR1b-int LTR ERV1 1 314 -7806 2198 115 0 0 chrX 15618653 15618957 -161355183 + AluSx SINE Alu 1 304 -8 2169 156 177 16 chrX 15618958 15619445 -161354695 + LTR57-int LTR ERVL 1032 1596 -3747 * 3217 99 36 4 chrX 15619308 15619804 -161354336 + LOR1b-int LTR ERV1 1409 1920 -6200 2380 64 4 0 chrX 15619823 15620127 -161354013 + AluY SINE Alu 1 305 0 735 101 0 0 chrX 15620167 15620266 -161353874 + LOR1b-int LTR ERV1 2363 2461 -5659 1928 124 25 4 chrX 15620267 15620542 -161353598 + AluSx SINE Alu 1 281 -31 186 71 0 0 chrX 15620542 15620570 -161353570 + (CTAA)n Simple_repeat Simple_repeat 1 28 0 818 90 0 131 chrX 15620584 15620729 -161353411 + FLAM_C SINE Alu 1 126 -7 406 305 94 10 chrX 15620795 15621158 -161352982 + L1ME LINE L1 5197 5586 -535 1218 165 55 15 chrX 15621328 15621639 -161352501 - MLT2B2 LTR ERVL 0 515 138 2195 106 0 7 chrX 15621639 15621931 -161352209 - AluSg SINE Alu -20 290 1 680 184 49 104 chrX 15621931 15622069 -161352071 - L1MC5 LINE L1 -251 7710 7566 1580 133 75 11 chrX 15622069 15622390 -161351750 - AluJb SINE Alu 0 312 6 680 184 49 104 chrX 15622390 15622424 -161351716 - L1MC5 LINE L1 -395 7566 7532 1920 148 10 0 chrX 15622424 15622715 -161351425 + AluJb SINE Alu 1 294 -18 680 184 49 104 chrX 15622715 15622829 -161351311 - L1MC5 LINE L1 -429 7532 7439 2266 198 104 76 chrX 15622840 15623382 -161350758 - L1MC5 LINE L1 -465 7496 6922 513 170 0 20 chrX 15623382 15623482 -161350658 - L1MB7 LINE L1 -19 6165 6068 2266 198 104 76 chrX 15623482 15623769 -161350371 - L1MC5 LINE L1 -1039 6922 6644 950 126 0 15 chrX 15625459 15625594 -161348546 - FLAM_C SINE Alu 0 133 1 2113 65 4 8 chrX 15625683 15625944 -161348196 + AluSq SINE Alu 1 260 -53 319 257 138 99 chrX 15627114 15627476 -161346664 - L1M2 LINE L1 -5578 1271 896 401 285 165 80 chrX 15627701 15628336 -161345804 - L1M2 LINE L1 -5581 1268 580 532 149 0 11 chrX 15629572 15629666 -161344474 - FLAM_C SINE Alu -2 141 49 2295 95 10 0 chrX 15630052 15630346 -161343794 - AluSx SINE Alu -15 297 1 25 65 0 0 chrX 15632056 15632102 -161342038 + AT_rich Low_complexity Low_complexity 1 46 0 287 273 71 55 chrX 15632201 15632384 -161341756 - L1ME2 LINE L1 -134 6030 5845 1977 177 49 97 chrX 15632397 15632709 -161341431 + Charlie1b DNA MER1_type 1 277 -2484 2508 80 34 11 chrX 15632709 15633058 -161341082 + L1PA14 LINE L1 5803 6159 -2 1977 177 49 97 chrX 15633058 15633294 -161340846 + Charlie1b DNA MER1_type 277 523 0 765 260 118 52 chrX 15633312 15633803 -161340337 - L1ME2 LINE L1 -362 5802 5218 1983 120 0 7 chrX 15633803 15634110 -161340030 - AluSx SINE Alu 0 305 1 765 260 118 52 chrX 15634110 15634430 -161339710 - L1ME2 LINE L1 -946 5218 4920 379 300 139 21 chrX 15634486 15634574 -161339566 - L1ME2 LINE L1 -1308 4838 4762 2530 55 0 0 chrX 15634574 15634867 -161339273 - AluY SINE Alu -18 293 1 379 300 139 21 chrX 15634867 15635015 -161339125 - L1ME2 LINE L1 -1384 4762 4574 235 294 94 12 chrX 15635082 15635252 -161338888 - L1ME2 LINE L1 -1683 4463 4280 952 217 30 15 chrX 15635257 15635455 -161338685 + HsTC2 DNA Tc2 2 202 -1696 237 213 21 0 chrX 15635456 15635503 -161338637 + HsTC2 DNA Tc2 491 538 -1360 * 1451 183 106 35 chrX 15635494 15635705 -161338435 + HsTC2 DNA Tc2 1287 1481 -417 1942 101 4 4 chrX 15635705 15635972 -161338168 - AluSx SINE Alu -45 267 1 1451 183 106 35 chrX 15635972 15636165 -161337975 + HsTC2 DNA Tc2 1481 1896 -2 460 85 0 0 chrX 15636186 15636245 -161337895 + Alu SINE Alu 2 60 -258 223 48 24 24 chrX 15636253 15636295 -161337845 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 540 286 43 47 chrX 15636323 15636546 -161337594 - L1ME2 LINE L1 -1924 4222 3999 1518 99 0 52 chrX 15636546 15636778 -161337362 - AluSg/x SINE Alu -8 302 83 540 286 43 47 chrX 15636778 15636876 -161337264 - L1ME2 LINE L1 -2147 3999 3902 1568 157 51 14 chrX 15636902 15637196 -161336944 - AluJo SINE Alu 0 312 8 248 284 59 0 chrX 15637257 15637359 -161336781 - L1ME2 LINE L1 -2438 3708 3601 2135 92 7 30 chrX 15637389 15637692 -161336448 - AluSq SINE Alu -14 299 4 27 62 0 0 chrX 15638122 15638170 -161335970 + AT_rich Low_complexity Low_complexity 1 48 0 2342 97 0 0 chrX 15638212 15638512 -161335628 - AluSx SINE Alu -12 300 1 1715 109 27 0 chrX 15638519 15638775 -161335365 - L1MA5 LINE L1 -30 6270 6008 311 273 86 43 chrX 15638775 15638962 -161335178 - L1ME2 LINE L1 -3167 2979 2785 1579 208 78 69 chrX 15638966 15639520 -161334620 + L1M4 LINE L1 4312 4870 -1276 2027 133 6 25 chrX 15639596 15639913 -161334227 - AluSx SINE Alu -1 311 1 1324 100 0 17 chrX 15639976 15640156 -161333984 + AluSp SINE Alu 121 297 -16 292 328 115 8 chrX 15640284 15640519 -161333621 - L1M4 LINE L1 -1880 4266 4007 1839 156 63 3 chrX 15640598 15640931 -161333209 - L1MB7 LINE L1 0 6184 5832 180 0 0 0 chrX 15641134 15641154 -161332986 + (TG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chrX 15641172 15641194 -161332946 + (T)n Simple_repeat Simple_repeat 1 22 0 2523 83 0 0 chrX 15641279 15641591 -161332549 - AluSx SINE Alu 0 312 1 812 183 7 14 chrX 15641591 15641733 -161332407 - AluJo SINE Alu -169 143 3 231 36 0 0 chrX 15641745 15641773 -161332367 + (A)n Simple_repeat Simple_repeat 1 28 0 210 162 0 0 chrX 15641870 15641907 -161332233 + T-rich Low_complexity Low_complexity 1 37 0 2180 98 0 26 chrX 15642563 15642870 -161331270 + AluSq SINE Alu 1 299 -14 2241 103 3 3 chrX 15643031 15643332 -161330808 - AluSc SINE Alu -8 301 1 532 277 108 40 chrX 15645310 15645809 -161328331 + HAL1 LINE L1 816 1348 -1159 26 0 0 0 chrX 15646445 15646471 -161327669 + AT_rich Low_complexity Low_complexity 1 26 0 258 105 0 0 chrX 15646566 15646604 -161327536 + (T)n Simple_repeat Simple_repeat 1 38 0 208 384 23 0 chrX 15647253 15647339 -161326801 - L2 LINE L2 -545 2769 2682 2327 100 0 3 chrX 15648070 15648370 -161325770 - AluSx SINE Alu -13 299 1 2170 118 0 9 chrX 15648510 15648825 -161325315 - AluSx SINE Alu 0 312 1 254 332 121 11 chrX 15649315 15649505 -161324635 - L2 LINE L2 -432 2882 2672 390 42 0 0 chrX 15649808 15649856 -161324284 + (GA)n Simple_repeat Simple_repeat 2 49 0 372 242 58 76 chrX 15650221 15650404 -161323736 + L1ME3 LINE L1 5977 6164 0 1643 148 16 49 chrX 15651505 15651809 -161322331 - AluJb SINE Alu -18 294 1 2206 125 0 6 chrX 15651842 15652154 -161321986 + AluSx SINE Alu 1 310 -2 2441 68 3 7 chrX 15652310 15652606 -161321534 - AluSc SINE Alu -14 295 1 1709 172 44 0 chrX 15652617 15652914 -161321226 - AluJo SINE Alu -2 310 1 235 243 83 35 chrX 15653183 15653297 -161320843 + MIR SINE MIR 50 167 -71 628 216 27 40 chrX 15653305 15653453 -161320687 - MIR SINE MIR -46 216 71 2242 109 0 3 chrX 15653488 15653792 -161320348 - AluSx SINE Alu -9 303 1 2444 77 3 0 chrX 15653954 15654252 -161319888 - AluSp SINE Alu -14 299 1 2304 96 10 3 chrX 15654344 15654646 -161319494 - AluSx SINE Alu -8 304 1 2191 111 0 7 chrX 15654838 15655145 -161318995 - AluY SINE Alu -6 305 1 22 0 0 0 chrX 15655148 15655170 -161318970 + AT_rich Low_complexity Low_complexity 1 22 0 243 226 0 19 chrX 15655237 15655290 -161318850 + MIR SINE MIR 71 122 -140 2434 59 3 23 chrX 15655839 15656143 -161317997 - AluY SINE Alu -13 298 1 2407 83 0 3 chrX 15656190 15656502 -161317638 - AluY SINE Alu 0 311 1 1729 161 20 7 chrX 15656502 15656794 -161317346 - AluSx SINE Alu -16 296 1 2349 81 0 13 chrX 15657859 15658157 -161315983 + AluSx SINE Alu 1 294 -18 1961 143 0 3 chrX 15658297 15658590 -161315550 - AluSx SINE Alu -14 298 7 274 287 29 73 chrX 15659151 15659287 -161314853 - L2 LINE L2 -5 3267 3138 484 278 70 48 chrX 15659500 15659770 -161314370 - L1ME LINE L1 -436 5685 5410 247 322 151 47 chrX 15659812 15661094 -161313046 - L2 LINE L2 -673 2641 1226 2238 81 0 7 chrX 15661094 15661400 -161312740 - AluSx SINE Alu 0 304 1 2155 97 47 53 chrX 15661420 15661644 -161312496 + MER46B DNA MER2_type 1 99 -2632 2061 82 6 91 chrX 15661644 15661974 -161312166 - AluSx SINE Alu -10 302 1 2155 97 47 53 chrX 15661974 15662110 -161312030 + MER46B DNA MER2_type 99 234 -2 22 35 0 0 chrX 15662508 15662537 -161311603 + AT_rich Low_complexity Low_complexity 1 29 0 24 85 0 0 chrX 15662628 15662687 -161311453 + AT_rich Low_complexity Low_complexity 1 59 0 1429 187 3 50 chrX 15662879 15663178 -161310962 - AluJb SINE Alu -27 285 1 2166 114 3 0 chrX 15663373 15663663 -161310477 - AluSx SINE Alu -21 291 1 886 195 0 30 chrX 15663698 15663862 -161310278 + FRAM SINE Alu 1 159 -7 1595 155 22 57 chrX 15664245 15664562 -161309578 + AluJo SINE Alu 1 306 -6 259 298 69 30 chrX 15664717 15664848 -161309292 + L2 LINE L2 3178 3313 0 313 91 0 318 chrX 15665008 15665118 -161309022 - FAM SINE Alu -51 124 77 198 353 35 12 chrX 15665119 15665204 -161308936 - MIR SINE MIR -158 104 18 396 333 109 0 chrX 15665605 15665761 -161308379 - L2 LINE L2 -1 3271 3099 2227 87 7 27 chrX 15665805 15666105 -161308035 + AluSg SINE Alu 1 294 -16 377 213 150 8 chrX 15666188 15666315 -161307825 - L1MC5 LINE L1 -134 7827 7683 415 314 110 71 chrX 15666452 15666757 -161307383 - L2 LINE L2 -422 2892 2562 2383 82 0 0 chrX 15666757 15667050 -161307090 - AluY SINE Alu -18 293 1 415 314 110 71 chrX 15667050 15667197 -161306943 - L2 LINE L2 -752 2562 2422 28 29 0 0 chrX 15667966 15668001 -161306139 + AT_rich Low_complexity Low_complexity 1 35 0 1333 109 35 0 chrX 15668001 15668203 -161305937 - L1MA8 LINE L1 -3 6288 6080 589 269 35 7 chrX 15668695 15668840 -161305300 + MIR SINE MIR 36 184 -78 349 315 34 14 chrX 15669423 15669569 -161304571 + MIR SINE MIR 95 243 -19 2221 114 0 3 chrX 15669615 15669913 -161304227 - AluSx SINE Alu -15 297 1 1601 157 63 18 chrX 15670538 15670824 -161303316 + AluJb SINE Alu 1 299 -13 2697 156 65 2 chrX 15671020 15671500 -161302640 + L1MB7 LINE L1 5658 6167 -17 2460 119 37 15 chrX 15671711 15672121 -161302019 - L1MB3 LINE L1 -1 6182 5764 272 250 10 77 chrX 15672185 15672211 -161301929 - HAL1 LINE L1 -100 2407 2381 2953 142 147 26 chrX 15672211 15672660 -161301480 + MER6A DNA MER2_type 2 528 -337 2185 116 0 3 chrX 15672660 15672961 -161301179 - AluSx SINE Alu -12 300 1 2953 142 147 26 chrX 15672961 15673048 -161301092 + MER6A DNA MER2_type 528 603 -2 272 250 10 77 chrX 15673048 15673117 -161301023 - HAL1 LINE L1 -126 2381 2309 1718 107 48 55 chrX 15673117 15673269 -161300871 - AluSg SINE Alu -21 289 138 2507 50 0 10 chrX 15673269 15673567 -161300573 - AluY SINE Alu -15 296 2 1718 107 48 55 chrX 15673567 15673705 -161300435 - AluSg SINE Alu -172 138 1 272 250 10 77 chrX 15673705 15673804 -161300336 - HAL1 LINE L1 -198 2309 2225 231 227 98 104 chrX 15673895 15674033 -161300107 - HAL1b LINE L1 -437 911 773 2276 96 7 0 chrX 15674033 15674326 -161299814 - AluSp SINE Alu -18 295 1 231 227 98 104 chrX 15674326 15674350 -161299790 - HAL1b LINE L1 -575 773 750 401 221 79 0 chrX 15674370 15674497 -161299643 - HAL1 LINE L1 -343 2164 2028 1883 144 17 17 chrX 15674510 15674808 -161299332 - AluJo SINE Alu -14 298 1 673 158 238 12 chrX 15674880 15675044 -161299096 - MER3 DNA MER1_type -8 201 1 720 192 56 0 chrX 15675102 15675227 -161298913 + FLAM_C SINE Alu 2 133 -10 348 250 186 42 chrX 15675402 15675666 -161298474 + HAL1b LINE L1 49 350 -998 1132 248 29 32 chrX 15675673 15675984 -161298156 + HAL1b LINE L1 418 727 -621 313 228 159 53 chrX 15675998 15676112 -161298028 + HAL1b LINE L1 832 933 -415 1655 160 78 0 chrX 15676112 15676394 -161297746 - AluJo SINE Alu -8 304 1 313 228 159 53 chrX 15676394 15676468 -161297672 + HAL1b LINE L1 933 1040 -308 642 280 146 19 chrX 15676468 15676736 -161297404 - L2 LINE L2 -1 3312 3011 2158 222 238 42 chrX 15676739 15677174 -161296966 - L2 LINE L2 -978 2336 1988 1812 169 7 3 chrX 15677174 15677469 -161296671 - AluJo SINE Alu -16 296 1 2158 222 238 42 chrX 15677469 15677549 -161296591 - L2 LINE L2 -1326 1988 1925 2413 88 3 0 chrX 15677549 15677846 -161296294 + AluSq SINE Alu 1 298 -15 2158 222 238 42 chrX 15677846 15678433 -161295707 - L2 LINE L2 -1389 1925 1016 275 352 23 16 chrX 15678642 15678770 -161295370 + MIR SINE MIR 19 147 -115 283 366 159 8 chrX 15680991 15681242 -161292898 + L2 LINE L2 2363 2651 -663 195 317 96 19 chrX 15681393 15681497 -161292643 - MER5B DNA MER1_type -65 113 2 21 0 0 0 chrX 15682080 15682101 -161292039 + AT_rich Low_complexity Low_complexity 1 21 0 467 274 0 18 chrX 15682655 15682768 -161291372 + MIR SINE MIR 79 189 -73 2081 121 40 0 chrX 15683486 15683784 -161290356 + AluSx SINE Alu 1 310 -2 1517 151 107 4 chrX 15684279 15684414 -161289726 - AluJb SINE Alu -12 300 180 450 0 0 0 chrX 15684414 15684464 -161289676 + (TG)n Simple_repeat Simple_repeat 2 51 0 1517 151 107 4 chrX 15684464 15684600 -161289540 - AluJb SINE Alu -132 180 1 2318 62 10 14 chrX 15684867 15685159 -161288981 + AluY SINE Alu 2 292 -19 291 167 19 0 chrX 15685962 15686016 -161288124 - L2 LINE L2 -4 3309 3255 1817 158 0 24 chrX 15687496 15687794 -161286346 - AluSx SINE Alu -21 291 1 25 0 0 0 chrX 15689567 15689592 -161284548 + AT_rich Low_complexity Low_complexity 1 25 0 2136 98 3 41 chrX 15690798 15691116 -161283024 - AluSg1 SINE Alu -1 308 3 198 0 0 0 chrX 15691591 15691613 -161282527 + (T)n Simple_repeat Simple_repeat 1 22 0 980 166 37 32 chrX 15693269 15693456 -161280684 + MER5A DNA MER1_type 1 188 -1 189 0 0 0 chrX 15693758 15693779 -161280361 + (TG)n Simple_repeat Simple_repeat 2 22 0 318 269 107 31 chrX 15695388 15695612 -161278528 - L1ME LINE L1 -626 5540 5299 309 314 53 26 chrX 15695651 15695877 -161278263 - L1ME LINE L1 -924 5222 4991 1017 180 0 0 chrX 15695919 15696080 -161278060 + FRAM SINE Alu 1 153 -23 335 271 159 35 chrX 15696101 15696440 -161277700 - L1ME LINE L1 -1180 4966 4586 2234 98 3 0 chrX 15696443 15696740 -161277400 - AluSx SINE Alu -14 298 1 1700 87 61 32 chrX 15696923 15697200 -161276940 + AluSq SINE Alu 1 285 -28 416 236 11 0 chrX 15697385 15697474 -161276666 - MER5A DNA MER1_type -83 106 17 437 204 299 7 chrX 15697497 15697634 -161276506 + MER5B DNA MER1_type 1 177 -1 457 296 134 37 chrX 15697636 15697763 -161276377 - L1ME LINE L1 -2757 3389 3276 2343 96 0 0 chrX 15697763 15698064 -161276076 - AluSx SINE Alu -11 301 1 457 296 134 37 chrX 15698064 15698182 -161275958 - L1ME LINE L1 -2870 3276 3171 2161 134 0 6 chrX 15698182 15698496 -161275644 - AluJo SINE Alu 0 312 1 457 296 134 37 chrX 15698496 15698837 -161275303 - L1ME LINE L1 -2975 3171 2745 874 159 0 0 chrX 15698995 15699127 -161275013 - FLAM_C SINE Alu 0 133 2 470 315 102 35 chrX 15699535 15699986 -161274154 - HAL1 LINE L1 -827 1680 1200 195 129 0 0 chrX 15700129 15700160 -161273980 + (A)n Simple_repeat Simple_repeat 1 31 0 2820 118 11 122 chrX 15700490 15701023 -161273117 + MER101 LTR ERV1 1 474 0 499 287 32 103 chrX 15701042 15701363 -161272777 - L1ME LINE L1 -597 5573 5231 407 35 18 0 chrX 15701363 15701420 -161272720 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 636 121 222 0 chrX 15701420 15701519 -161272621 - FLAM_C SINE Alu -12 121 1 499 287 32 103 chrX 15701519 15701585 -161272555 - L1ME LINE L1 -938 5232 5163 1769 135 14 44 chrX 15701585 15701881 -161272259 - AluJb SINE Alu -25 287 1 499 287 32 103 chrX 15701881 15702336 -161271804 - L1ME LINE L1 -1007 5163 4780 2106 125 0 0 chrX 15702373 15702653 -161271487 - AluSx SINE Alu -32 280 1 3578 151 16 31 chrX 15702663 15702824 -161271316 - L1MB7 LINE L1 0 6184 6022 2230 115 3 3 chrX 15702824 15703136 -161271004 + AluSq SINE Alu 2 313 0 3578 151 16 31 chrX 15703136 15703645 -161270495 - L1MB7 LINE L1 -162 6022 5524 674 145 0 65 chrX 15703646 15703770 -161270370 + AluJb SINE Alu 190 305 -7 312 228 24 55 chrX 15703772 15703899 -161270241 - L1MEd LINE L1 -5000 1205 1083 1995 201 60 9 chrX 15703956 15704408 -161269732 - L1ME1 LINE L1 -278 5888 5414 1527 239 43 10 chrX 15704464 15704857 -161269283 - L1ME1 LINE L1 -23 6143 5738 * 7605 83 7 29 chrX 15704845 15705183 -161268957 + L1MA1 LINE L1 5138 5482 -820 2489 70 3 0 chrX 15705183 15705484 -161268656 + AluSp SINE Alu 1 302 -11 7605 83 7 29 chrX 15705484 15706335 -161267805 + L1MA1 LINE L1 5482 6302 0 1544 209 163 3 chrX 15706371 15706633 -161267507 - L1ME1 LINE L1 -420 5746 5527 2022 121 16 22 chrX 15706633 15706947 -161267193 - AluJb SINE Alu 0 312 1 1544 209 163 3 chrX 15706947 15707160 -161266980 - L1ME1 LINE L1 -639 5527 5203 3625 223 66 38 chrX 15707179 15707432 -161266708 - L1MEd LINE L1 -5302 1094 850 1911 149 10 23 chrX 15707432 15707734 -161266406 - AluJb SINE Alu -14 298 1 3625 223 66 38 chrX 15707734 15708535 -161265605 - L1MEd LINE L1 -5546 850 10 2028 96 6 81 chrX 15708584 15708906 -161265234 - AluSx SINE Alu -14 298 1 243 0 0 0 chrX 15709234 15709261 -161264879 + (TG)n Simple_repeat Simple_repeat 2 28 0 687 269 14 0 chrX 15709471 15709694 -161264446 - HAL1b LINE L1 -520 828 603 471 271 157 8 chrX 15709688 15709943 -161264197 - HAL1 LINE L1 -604 1903 1611 * 322 289 96 60 chrX 15710037 15710349 -161263791 - HAL1 LINE L1 -1043 1464 1126 2172 119 3 3 chrX 15710349 15710643 -161263497 - AluSp SINE Alu -19 294 1 322 289 96 60 chrX 15710643 15710842 -161263298 - HAL1 LINE L1 -1381 1126 935 1598 123 123 15 chrX 15711207 15711468 -161262672 - AluJb SINE Alu -23 289 1 2293 112 3 0 chrX 15712055 15712349 -161261791 - AluSg SINE Alu -15 295 1 2019 120 94 26 chrX 15712563 15712904 -161261236 + THE1B LTR MaLR 1 364 0 586 235 59 12 chrX 15713060 15713230 -161260910 + MER5B DNA MER1_type 1 178 0 1789 166 3 0 chrX 15713781 15714065 -161260075 + AluJb SINE Alu 11 295 -17 2504 46 0 0 chrX 15714070 15714384 -161259756 + AluY SINE Alu 1 314 0 2121 109 6 26 chrX 15714390 15714702 -161259438 + AluSx SINE Alu 1 306 -6 2622 44 0 0 chrX 15714725 15715023 -161259117 - AluY SINE Alu -9 302 5 2091 125 0 26 chrX 15715303 15715615 -161258525 - AluJb SINE Alu -8 304 1 725 133 9 18 chrX 15716330 15716443 -161257697 - FLAM_C SINE Alu -15 128 17 207 162 0 0 chrX 15716864 15716901 -161257239 + GA-rich Low_complexity Low_complexity 6 42 0 24 32 0 0 chrX 15717089 15717120 -161257020 + AT_rich Low_complexity Low_complexity 1 31 0 365 250 62 56 chrX 15717304 15717431 -161256709 + MER112 DNA MER1_type 8 133 -127 2129 107 7 29 chrX 15717431 15717740 -161256400 - AluSx SINE Alu -10 302 1 1805 142 17 37 chrX 15717743 15718039 -161256101 - AluJb SINE Alu -22 290 1 365 250 62 56 chrX 15718039 15718067 -161256073 + MER112 DNA MER1_type 134 168 -92 1629 155 31 36 chrX 15718084 15718599 -161255541 + L1MB4 LINE L1 5093 5609 -571 2283 87 7 3 chrX 15718599 15718885 -161255255 + AluSx SINE Alu 13 299 -13 1629 155 31 36 chrX 15718885 15719204 -161254936 + L1MB4 LINE L1 5609 6079 -101 2262 93 31 0 chrX 15719204 15719495 -161254645 - AluSx SINE Alu -9 303 4 1629 155 31 36 chrX 15719495 15719587 -161254553 + L1MB4 LINE L1 6079 6170 -10 14124 127 15 21 chrX 15770341 15772497 -161201643 - MER57A-int LTR ERV1 -5394 2143 1 2302 159 15 29 chrX 15772497 15772526 -161201614 - MER57A LTR ERV1 0 403 375 2234 81 0 13 chrX 15772526 15772781 -161201359 - AluSx SINE Alu -7 305 53 318 26 0 0 chrX 15772781 15772820 -161201320 + (CCCCCA)n Simple_repeat Simple_repeat 3 41 0 2234 81 0 13 chrX 15772820 15772873 -161201267 - AluSx SINE Alu -259 53 1 2302 159 15 29 chrX 15772873 15773252 -161200888 - MER57A LTR ERV1 -28 375 1 239 268 250 0 chrX 15773649 15773761 -161200379 + MIR SINE MIR 37 176 -86 29 0 0 0 chrX 15774067 15774096 -161200044 + AT_rich Low_complexity Low_complexity 1 29 0 2099 131 0 0 chrX 15774101 15774407 -161199733 + AluJb SINE Alu 1 306 -6 328 234 131 0 chrX 15774408 15774515 -161199625 - MIR SINE MIR -6 256 136 374 53 18 0 chrX 15774627 15774684 -161199456 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 2225 64 0 7 chrX 15774693 15774973 -161199167 - AluSg SINE Alu -32 278 1 285 139 208 14 chrX 15775256 15775328 -161198812 - L1ME3A LINE L1 -272 5898 5813 711 232 65 13 chrX 15775332 15775487 -161198653 - MIR SINE MIR -98 164 2 227 79 26 0 chrX 15775594 15775632 -161198508 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 291 54 27 0 chrX 15775805 15775842 -161198298 + MER68 LTR ERV1 354 391 -171 2279 64 3 3 chrX 15776024 15776320 -161197820 - AluY SINE Alu -15 296 1 1112 214 14 0 chrX 15777054 15777274 -161196866 - MER58A DNA MER1_type 0 224 2 3087 155 37 37 chrX 15777451 15777510 -161196630 + MER68 LTR ERV1 1 59 -503 1968 131 0 0 chrX 15777510 15777820 -161196320 + AluSx SINE Alu 1 310 0 3087 155 37 37 chrX 15777820 15778321 -161195819 + MER68 LTR ERV1 58 562 0 1996 116 0 20 chrX 15778858 15778996 -161195144 + AluJb SINE Alu 1 140 -172 2238 69 0 14 chrX 15778996 15779309 -161194831 + AluY SINE Alu 1 311 0 1996 116 0 20 chrX 15779309 15779472 -161194668 + AluJb SINE Alu 140 296 -16 643 131 10 0 chrX 15779696 15779795 -161194345 + LTR8A LTR ERV1 1 100 -627 24 53 0 0 chrX 15781328 15781366 -161192774 + AT_rich Low_complexity Low_complexity 1 38 0 245 265 0 26 chrX 15781398 15781515 -161192625 + (TA)n Simple_repeat Simple_repeat 1 114 0 2191 105 0 0 chrX 15781545 15781841 -161192299 - AluSx SINE Alu -16 296 1 2023 179 5 29 chrX 15782063 15782437 -161191703 - MLT1A1 LTR MaLR 0 365 1 255 326 161 29 chrX 15782645 15782918 -161191222 + L2 LINE L2 2467 2775 -539 617 301 29 19 chrX 15782957 15783163 -161190977 - MIR SINE MIR -4 258 51 3513 198 41 26 chrX 15783171 15784010 -161190130 + L1ME1 LINE L1 4620 5444 -722 1835 99 0 0 chrX 15784010 15784284 -161189856 + AluY SINE Alu 39 312 0 3513 198 41 26 chrX 15784284 15784654 -161189486 + L1ME1 LINE L1 5444 5848 -318 1687 190 3 0 chrX 15784654 15784944 -161189196 - AluJb SINE Alu -21 291 1 3513 198 41 26 chrX 15784944 15785256 -161188884 + L1ME1 LINE L1 5848 6154 -12 1905 118 0 51 chrX 15785309 15785622 -161188518 + AluJb SINE Alu 1 297 -15 618 95 0 0 chrX 15785937 15786032 -161188108 + (CA)n Simple_repeat Simple_repeat 2 96 0 1175 301 53 6 chrX 15786288 15786757 -161187383 + LTR16C LTR ERVL 1 491 0 515 309 60 29 chrX 15787117 15787600 -161186540 - MER20B DNA MER1_type 0 783 286 1032 105 0 0 chrX 15789717 15789928 -161184212 + (CTG)n Simple_repeat Simple_repeat 1 211 0 219 248 0 0 chrX 15790591 15790696 -161183444 + (CAG)n Simple_repeat Simple_repeat 3 107 0 23 78 0 0 chrX 15791240 15791291 -161182849 + AT_rich Low_complexity Low_complexity 1 51 0 1516 211 35 3 chrX 15791314 15791660 -161182480 - L1MB2 LINE L1 -3 6168 5812 2256 189 51 14 chrX 15792289 15792782 -161181358 - L1MB5 LINE L1 0 6174 5664 1226 158 167 12 chrX 15793748 15794084 -161180056 - Charlie5 DNA MER1_type 0 2624 2237 745 146 8 0 chrX 15794087 15794210 -161179930 - Charlie5 DNA MER1_type -2488 124 1 2247 77 13 3 chrX 15794560 15794858 -161179282 - AluSx SINE Alu -11 301 1 443 150 40 50 chrX 15794933 15795033 -161179107 + L1MC5 LINE L1 7811 7909 -52 297 244 122 61 chrX 15796295 15796426 -161177714 - MIR SINE MIR -56 206 68 498 222 0 0 chrX 15797608 15797734 -161176406 + (CA)n Simple_repeat Simple_repeat 1 126 0 1117 221 11 32 chrX 15798244 15798524 -161175616 - L2 LINE L2 -2435 879 606 378 0 0 0 chrX 15798604 15798646 -161175494 + (TG)n Simple_repeat Simple_repeat 1 42 0 1999 93 0 4 chrX 15798646 15798926 -161175214 - AluSx SINE Alu -33 279 1 268 362 110 17 chrX 15798945 15799246 -161174894 - L2 LINE L2 -22 3250 2922 1843 123 22 66 chrX 15799397 15799714 -161174426 + AluJb SINE Alu 5 307 -5 2043 143 3 7 chrX 15800291 15800599 -161173541 + AluSx SINE Alu 1 307 -5 353 241 13 0 chrX 15800666 15800745 -161173395 + MER116 DNA Mariner 1 80 0 292 295 32 21 chrX 15801027 15801122 -161173018 + MIR SINE MIR 121 216 -46 270 283 121 20 chrX 15801153 15801252 -161172888 + MER5A DNA MER1_type 20 128 -61 414 0 0 0 chrX 15801619 15801665 -161172475 + (TG)n Simple_repeat Simple_repeat 1 46 0 218 244 22 0 chrX 15802002 15802047 -161172093 + MER5A DNA MER1_type 61 106 -83 396 0 0 0 chrX 15802059 15802103 -161172037 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 813 147 0 8 chrX 15802103 15802221 -161171919 - FLAM_C SINE Alu -192 120 2 254 273 0 0 chrX 15802224 15802279 -161171861 + MER5A DNA MER1_type 129 183 -6 365 289 44 25 chrX 15802438 15802597 -161171543 + MIR SINE MIR 46 207 -55 195 42 0 0 chrX 15802801 15802825 -161171315 + (CA)n Simple_repeat Simple_repeat 2 25 0 972 179 12 0 chrX 15803158 15803331 -161170809 - MER5A DNA MER1_type 0 189 15 189 0 0 0 chrX 15803430 15803451 -161170689 + (T)n Simple_repeat Simple_repeat 1 21 0 450 110 30 100 chrX 15803489 15803589 -161170551 - MER5A DNA MER1_type -92 97 5 1780 159 3 10 chrX 15804406 15804695 -161169445 - AluJb SINE Alu -25 287 1 584 147 0 29 chrX 15805290 15805392 -161168748 + MER53 DNA DNA 2 100 -89 * 768 154 103 69 chrX 15805384 15805559 -161168581 - MER3 DNA MER1_type -28 181 1 977 193 28 6 chrX 15806069 15806250 -161167890 - MER5A DNA MER1_type -4 185 1 293 299 37 49 chrX 15806536 15806679 -161167461 - MIR SINE MIR -93 115 23 315 0 26 0 chrX 15807008 15807046 -161167094 + L1MB2 LINE L1 6097 6135 -36 2677 146 37 11 chrX 15807612 15807897 -161166243 - L1MA4 LINE L1 0 6482 6179 2397 97 61 19 chrX 15807897 15808257 -161165883 + THE1C LTR MaLR 1 375 0 2677 146 37 11 chrX 15808257 15808436 -161165704 - L1MA4 LINE L1 -303 6179 6006 26 0 0 0 chrX 15808528 15808554 -161165586 + AT_rich Low_complexity Low_complexity 1 26 0 4109 144 9 9 chrX 15808632 15809807 -161164333 - L1MA4 LINE L1 -474 6013 4838 2719 181 26 22 chrX 15809807 15810681 -161163459 - L1MA4 LINE L1 -3685 2643 1769 7122 163 33 4 chrX 15810684 15812207 -161161933 - L1MA4 LINE L1 -4065 1263 118 2163 109 7 0 chrX 15812308 15812591 -161161549 - AluSx SINE Alu -27 285 1 552 240 103 34 chrX 15812893 15813068 -161161072 - MLT1K LTR MaLR -24 564 378 2110 173 41 83 chrX 15813123 15813679 -161160461 - LTR9 LTR ERV1 0 612 80 701 280 73 5 chrX 15813843 15814061 -161160079 + LTR33 LTR ERVL 118 350 -171 3756 133 26 22 chrX 15814063 15814687 -161159453 - L1MB2 LINE L1 -263 5908 5283 2210 117 0 3 chrX 15814967 15815267 -161158873 - AluSx SINE Alu -13 299 1 1185 155 62 0 chrX 15815399 15815593 -161158547 + MER3 DNA MER1_type 4 209 0 1005 220 44 4 chrX 15816147 15816374 -161157766 + MIR SINE MIR 27 262 0 444 273 23 0 chrX 15816573 15816705 -161157435 - LTR16A1 LTR ERVL -2 455 321 22 0 0 30 chrX 15816715 15816728 -161157412 + AT_rich Low_complexity Low_complexity 1 13 -19 1103 32 0 0 chrX 15816728 15816852 -161157288 - L1PA3 LINE L1 0 6155 6032 22 0 0 30 chrX 15816852 15816871 -161157269 + AT_rich Low_complexity Low_complexity 13 32 0 230 271 37 37 chrX 15816879 15816986 -161157154 - LTR16A1 LTR ERVL -142 315 209 650 267 56 6 chrX 15817262 15817442 -161156698 - MER5A DNA MER1_type 0 189 1 1166 215 149 69 chrX 15817716 15817866 -161156274 - LTR16C LTR ERVL 0 491 354 2537 67 0 6 chrX 15817866 15818178 -161155962 + AluSg SINE Alu 1 310 0 1166 215 149 69 chrX 15818178 15818478 -161155662 - LTR16C LTR ERVL -137 354 5 528 342 87 27 chrX 15819733 15820172 -161153968 + L3 LINE CR1 1062 1526 -51 2100 95 9 80 chrX 15820183 15820508 -161153632 - AluSx SINE Alu -10 302 1 237 263 118 0 chrX 15820518 15820594 -161153546 - Charlie4 DNA MER1_type -5 1956 1872 2502 69 3 3 chrX 15820781 15821087 -161153053 - AluSp SINE Alu -7 306 1 359 306 41 25 chrX 15822571 15822692 -161151448 - L2 LINE L2 -18 3254 3132 917 174 132 18 chrX 15823036 15823255 -161150885 - MIR SINE MIR -1 261 18 363 106 39 39 chrX 15823599 15823703 -161150437 + (TTAGGG)n Simple_repeat Simple_repeat 2 105 0 493 231 0 38 chrX 15823733 15823919 -161150221 + (TTAGGG)n Simple_repeat Simple_repeat 1 179 0 747 182 0 0 chrX 15824294 15824415 -161149725 + MER63 DNA MER1_type 942 1062 0 288 0 0 0 chrX 15824759 15824791 -161149349 + (CA)n Simple_repeat Simple_repeat 2 33 0 467 201 0 125 chrX 15824836 15824980 -161149160 - MLT1H LTR MaLR 0 549 424 490 244 42 42 chrX 15825116 15825284 -161148856 - MLT1H LTR MaLR -379 170 3 313 282 57 119 chrX 15825706 15825824 -161148316 + MIR SINE MIR 40 139 -123 2344 103 0 0 chrX 15825824 15826134 -161148006 - AluSg SINE Alu 0 310 1 313 282 57 119 chrX 15826134 15826242 -161147898 + MIR SINE MIR 139 252 -10 426 39 0 0 chrX 15826591 15826643 -161147497 + (CA)n Simple_repeat Simple_repeat 2 53 0 2400 99 0 3 chrX 15827581 15827894 -161146246 - AluSx SINE Alu 0 312 1 5318 171 31 22 chrX 15828378 15828441 -161145699 - L1MB2 LINE L1 0 6171 6110 5806 71 8 1 chrX 15828441 15829157 -161144983 - L1PA10 LINE L1 -1 6167 5447 5318 171 31 22 chrX 15829157 15831010 -161143130 - L1MB2 LINE L1 -61 6110 4235 2385 76 0 0 chrX 15831038 15831327 -161142813 - AluSc SINE Alu -20 289 1 1813 161 7 7 chrX 15832107 15832405 -161141735 - AluJo SINE Alu -14 298 1 592 219 78 0 chrX 15832443 15832571 -161141569 - LTR67 LTR ERVL -11 546 409 2019 119 0 14 chrX 15832705 15833018 -161141122 - AluSx SINE Alu 0 309 1 354 217 12 12 chrX 15833084 15833167 -161140973 + MLT1L LTR MaLR 531 613 -2 232 250 0 0 chrX 15834004 15834060 -161140080 + LTR16A LTR ERVL 2 57 -393 462 291 23 70 chrX 15834165 15834423 -161139717 + LTR16B LTR ERVL 219 464 0 2325 95 7 0 chrX 15834508 15834812 -161139328 - AluSq SINE Alu -7 306 1 294 92 0 4 chrX 15835095 15835142 -161138998 + MADE1 DNA Mariner 1 38 -42 2502 72 3 0 chrX 15835291 15835596 -161138544 + AluSp SINE Alu 1 306 -7 211 200 146 0 chrX 15835702 15835757 -161138383 + MIR SINE MIR 79 141 -121 407 276 144 33 chrX 15835811 15835992 -161138148 - MIR SINE MIR -49 213 13 290 252 20 150 chrX 15837211 15837290 -161136850 + MIR SINE MIR 37 90 -172 1266 224 97 80 chrX 15837290 15837742 -161136398 + LTR16B LTR ERVL 5 464 0 290 252 20 150 chrX 15837742 15837809 -161136331 + MIR SINE MIR 90 164 -98 497 256 62 31 chrX 15837814 15838009 -161136131 - Charlie7 DNA MER1_type -2410 202 2 410 151 68 0 chrX 15838808 15838881 -161135259 - L1MB8 LINE L1 -1 6177 6100 290 30 0 0 chrX 15838881 15838914 -161135226 - U2 snRNA snRNA -155 33 1 263 88 31 7 chrX 15838917 15838958 -161135182 - L1MB7 LINE L1 -67 6113 6067 1563 213 38 45 chrX 15838958 15839358 -161134782 + MLT2C1 LTR ERVL 1 397 0 263 88 31 7 chrX 15839358 15839372 -161134768 - L1MB7 LINE L1 -113 6067 6055 344 339 0 8 chrX 15839577 15839701 -161134439 + L2 LINE L2 3159 3281 -32 2190 157 69 19 chrX 15839706 15840083 -161134057 + MSTD LTR MaLR 1 396 0 560 186 0 10 chrX 15840085 15840187 -161133953 + MSTD-int LTR MaLR 2 102 -1269 846 204 0 0 chrX 15840188 15840340 -161133800 + FAM SINE Alu 1 152 -33 22 35 0 0 chrX 15840342 15840371 -161133769 + AT_rich Low_complexity Low_complexity 1 29 0 5711 204 67 77 chrX 15840371 15841648 -161132492 + MSTD-int LTR MaLR 90 1378 -357 1703 157 11 11 chrX 15841648 15841922 -161132218 + AluJo SINE Alu 1 274 -38 2447 59 3 0 chrX 15841926 15842212 -161131928 - AluSq SINE Alu -17 296 10 5711 204 67 77 chrX 15842212 15842433 -161131707 + MSTD-int LTR MaLR 1381 1578 -157 1829 190 64 19 chrX 15842433 15842806 -161131334 + MSTD LTR MaLR 7 396 0 883 289 93 37 chrX 15842923 15843401 -161130739 + MLT1H LTR MaLR 1 549 0 209 356 17 0 chrX 15843467 15843526 -161130614 - L2 LINE L2 -25 3247 3188 1855 124 19 1 chrX 15843542 15843910 -161130230 + L1MB7 LINE L1 5089 5465 -741 858 195 34 7 chrX 15843905 15844103 -161130037 + L1MA9 LINE L1 6103 6300 0 * 4579 150 27 4 chrX 15844129 15844861 -161129279 + L1MB7 LINE L1 5432 6180 -4 212 301 0 86 chrX 15844862 15844955 -161129185 - MIR SINE MIR -96 112 28 1687 169 49 14 chrX 15845061 15845345 -161128795 - AluJo SINE Alu -18 294 1 384 246 17 60 chrX 15845345 15845413 -161128727 - L1ME4a LINE L1 -234 5887 5818 8884 151 21 14 chrX 15845413 15846608 -161127532 - L1PA15 LINE L1 -7 6158 4972 1946 95 191 35 chrX 15846608 15846923 -161127217 - THE1B LTR MaLR 0 364 1 8884 151 21 14 chrX 15846923 15847231 -161126909 - L1PA15 LINE L1 -1193 4972 4667 2346 88 0 3 chrX 15847231 15847527 -161126613 - AluY SINE Alu -16 295 1 8884 151 21 14 chrX 15847527 15848321 -161125819 - L1PA15 LINE L1 -1498 4667 3847 384 246 17 60 chrX 15848321 15848407 -161125733 - L1ME4a LINE L1 -303 5818 5744 2572 59 0 0 chrX 15848407 15848710 -161125430 - AluY SINE Alu -8 303 1 384 246 17 60 chrX 15848710 15848796 -161125344 - L1ME4a LINE L1 -377 5744 5656 812 190 12 12 chrX 15848822 15848985 -161125155 - L1ME3A LINE L1 0 6170 6008 820 189 11 28 chrX 15849434 15849614 -161124526 - MER5B DNA MER1_type -1 177 1 347 137 14 0 chrX 15851023 15851096 -161123044 + GA-rich Low_complexity Low_complexity 1 74 0 626 229 26 20 chrX 15851149 15851302 -161122838 + MIR SINE MIR 18 171 -91 260 243 162 14 chrX 15851935 15852009 -161122131 + LTR67 LTR ERVL 104 188 -369 933 106 61 0 chrX 15852367 15852499 -161121641 + AluSg/x SINE Alu 155 294 -15 693 272 11 0 chrX 15852575 15852755 -161121385 + MER91A DNA MER1_type 1 182 -14 319 283 29 87 chrX 15853621 15853690 -161120450 + LTR16C LTR ERVL 1 60 -431 2371 88 0 0 chrX 15853690 15853985 -161120155 - AluSx SINE Alu -17 295 1 319 283 29 87 chrX 15853985 15854053 -161120087 + LTR16C LTR ERVL 60 130 -361 882 188 18 18 chrX 15854087 15854248 -161119892 + LTR16C LTR ERVL 275 435 -56 1739 129 23 0 chrX 15854248 15854504 -161119636 - Tigger5 DNA MER2_type 0 2323 2062 305 214 0 0 chrX 15854502 15854558 -161119582 - Tigger5 DNA MER2_type -2261 62 7 * 2094 159 50 14 chrX 15854615 15854974 -161119166 + MSTA LTR MaLR 1 372 -56 382 68 203 0 chrX 15855422 15855481 -161118659 + MSTA LTR MaLR 356 426 0 767 179 0 0 chrX 15855942 15856065 -161118075 + FLAM_A SINE Alu 4 126 -7 2027 166 19 55 chrX 15856075 15856199 -161117941 - L1MA5 LINE L1 -248 6052 5925 886 233 0 0 chrX 15856199 15856371 -161117769 - FAM SINE Alu -3 172 1 2027 166 19 55 chrX 15856371 15856667 -161117473 - L1MA5 LINE L1 -375 5925 5647 245 261 85 15 chrX 15856977 15857107 -161117033 - L1ME4a LINE L1 -13 6108 5970 236 333 54 0 chrX 15857129 15857297 -161116843 - L1ME4a LINE L1 -239 5882 5706 352 279 74 98 chrX 15857416 15857631 -161116509 - L2 LINE L2 -9 3263 3054 540 306 106 13 chrX 15857665 15857966 -161116174 - L2 LINE L2 -168 3145 2817 3789 57 0 11 chrX 15858276 15858529 -161115611 + L1PA8 LINE L1 5700 5947 -225 3506 84 18 12 chrX 15858529 15859019 -161115121 - LTR15 LTR ERV1 0 493 1 3789 57 0 11 chrX 15859019 15859243 -161114897 + L1PA8 LINE L1 5947 6172 0 2349 94 3 0 chrX 15859492 15859791 -161114349 + AluSx SINE Alu 1 300 -12 3611 163 69 7 chrX 15859823 15860643 -161113497 + L1MB7 LINE L1 5143 6013 -171 374 298 149 34 chrX 15860695 15860930 -161113210 + L2 LINE L2 3006 3267 -5 2192 98 31 0 chrX 15861098 15861385 -161112755 - AluSx SINE Alu -15 297 2 23 0 0 0 chrX 15861385 15861408 -161112732 + AT_rich Low_complexity Low_complexity 1 23 0 1685 127 7 73 chrX 15861408 15861708 -161112432 - AluJo SINE Alu -31 281 2 382 232 134 12 chrX 15861716 15861880 -161112260 - MER112 DNA MER1_type -75 185 2 2188 110 13 13 chrX 15862025 15862335 -161111805 - AluSx SINE Alu -2 310 1 404 324 33 29 chrX 15862711 15862850 -161111290 + MIR SINE MIR 14 156 -106 487 101 25 13 chrX 15862850 15862929 -161111211 - MER116 DNA Mariner 0 80 1 404 324 33 29 chrX 15862929 15862999 -161111141 + MIR SINE MIR 156 224 -38 681 275 5 41 chrX 15863371 15863589 -161110551 + MER63A DNA MER1_type 1 210 0 2060 125 17 3 chrX 15864126 15864422 -161109718 + AluJb SINE Alu 1 300 -12 1414 241 93 30 chrX 15864453 15865090 -161109050 + MER20B DNA MER1_type 1 762 -21 2205 98 37 7 chrX 15865090 15865385 -161108755 + AluSx SINE Alu 1 304 -8 1414 241 93 30 chrX 15865385 15865409 -161108731 + MER20B DNA MER1_type 762 783 0 209 250 19 0 chrX 15866117 15866169 -161107971 - L2 LINE L2 -10 3262 3210 702 160 44 138 chrX 15866344 15866436 -161107704 + L1ME3A LINE L1 5961 6060 -110 2094 118 26 9 chrX 15866436 15866782 -161107358 - L1MB2 LINE L1 -2 6169 5818 2430 92 0 3 chrX 15866791 15867096 -161107044 - AluSx SINE Alu -8 304 1 702 160 44 138 chrX 15867096 15867218 -161106922 + L1ME3A LINE L1 6068 6164 -6 2191 136 97 8 chrX 15867272 15867663 -161106477 + MSTB LTR MaLR 1 426 0 2616 89 28 14 chrX 15867980 15868339 -161105801 - THE1B LTR MaLR 0 364 1 926 144 10 101 chrX 15868374 15868582 -161105558 + MER53 DNA DNA 1 189 0 353 302 17 0 chrX 15869626 15869742 -161104398 + MIR3 SINE MIR 82 199 -9 1531 98 5 0 chrX 15869865 15870059 -161104081 + AluSx SINE Alu 1 195 -117 1533 209 44 71 chrX 15871079 15871485 -161102655 - MSTD LTR MaLR -1 395 1 2445 138 99 54 chrX 15871490 15871954 -161102186 + MLT1D LTR MaLR 21 505 0 1144 312 131 31 chrX 15872035 15873310 -161100830 - L2 LINE L2 -26 3246 1860 1907 155 89 3 chrX 15873545 15873881 -161100259 - MLT1A1 LTR MaLR 0 365 1 433 256 17 35 chrX 15875009 15875150 -161098990 - MIR3 SINE MIR -39 169 34 547 244 0 30 chrX 15875230 15875361 -161098779 - MIR SINE MIR -74 188 62 364 199 254 97 chrX 15875985 15876203 -161097937 + L1M4 LINE L1 5483 5734 -450 389 141 14 0 chrX 15876216 15876287 -161097853 + GA-rich Low_complexity Low_complexity 3 74 0 1116 218 127 32 chrX 15876567 15876875 -161097265 + LTR16C LTR ERVL 151 487 -4 2103 143 0 0 chrX 15877347 15877647 -161096493 + AluJb SINE Alu 1 300 -12 2909 107 16 34 chrX 15877986 15878324 -161095816 - MSTB1 LTR MaLR 0 432 102 2589 83 22 19 chrX 15878324 15878687 -161095453 + THE1B LTR MaLR 1 364 0 2909 107 16 34 chrX 15878687 15878788 -161095352 - MSTB1 LTR MaLR -330 102 1 313 156 42 73 chrX 15878837 15878939 -161095201 + MIR SINE MIR 63 164 -44 1320 127 49 118 chrX 15879039 15879204 -161094936 - MER33 DNA MER1_type -2261 324 149 2081 104 60 60 chrX 15879204 15879514 -161094626 - THE1B LTR MaLR 0 364 52 2296 96 10 13 chrX 15879514 15879815 -161094325 - AluSg SINE Alu -10 300 1 2081 104 60 60 chrX 15879815 15879868 -161094272 - THE1B LTR MaLR -311 53 1 1320 127 49 118 chrX 15879868 15879911 -161094229 - MER33 DNA MER1_type -2436 149 105 726 187 0 8 chrX 15879911 15880034 -161094106 + FLAM_A SINE Alu 1 122 -11 1320 127 49 118 chrX 15880034 15880171 -161093969 - MER33 DNA MER1_type -2480 105 2 2194 106 36 0 chrX 15880381 15880682 -161093458 - AluSx SINE Alu 0 312 1 1761 160 0 21 chrX 15881355 15881671 -161092469 - AluJb SINE Alu 0 310 1 351 273 47 7 chrX 15881686 15881836 -161092304 - L1ME4a LINE L1 -216 5905 5750 547 308 58 76 chrX 15882040 15882051 -161092089 - MLT1L LTR MaLR -6 609 599 1883 151 31 0 chrX 15882051 15882342 -161091798 - AluJb SINE Alu -12 300 1 547 308 58 76 chrX 15882342 15882950 -161091190 - MLT1L LTR MaLR -16 599 1 2198 71 0 91 chrX 15883189 15883526 -161090614 + AluSx SINE Alu 1 309 0 240 191 0 0 chrX 15883653 15883700 -161090440 + L1MA3 LINE L1 6259 6305 0 3589 144 20 5 chrX 15883867 15884466 -161089674 + L1MC1 LINE L1 5721 6328 -5 492 252 47 8 chrX 15884495 15884622 -161089518 + MIR SINE MIR 20 151 -111 369 313 117 36 chrX 15884990 15885271 -161088869 - L2 LINE L2 -1 3312 3009 2220 113 7 3 chrX 15885364 15885665 -161088475 + AluSx SINE Alu 1 302 -10 813 222 6 33 chrX 15885683 15885863 -161088277 - MLT1F1 LTR MaLR -2 565 391 243 236 55 0 chrX 15885870 15885925 -161088215 - MLT1E LTR MaLR -145 448 391 258 164 0 0 chrX 15885929 15885984 -161088156 + GA-rich Low_complexity Low_complexity 1 55 0 591 117 7 117 chrX 15886000 15886137 -161088003 - L1MC3 LINE L1 -117 7668 7547 2432 86 0 10 chrX 15886176 15886489 -161087651 - AluSx SINE Alu -2 310 1 1732 75 106 0 chrX 15886512 15886767 -161087373 - L1MA5A LINE L1 -5 6292 6011 884 110 0 0 chrX 15886783 15886910 -161087230 - L1MA5A LINE L1 -4 6293 6167 991 101 0 27 chrX 15886910 15887059 -161087081 - L1MC3 LINE L1 -215 7570 7426 717 172 52 34 chrX 15887059 15887223 -161086917 - MLT1F1 LTR MaLR -394 158 1 213 175 0 0 chrX 15887246 15887286 -161086854 - MER5A DNA MER1_type -84 105 66 2412 97 3 0 chrX 15887286 15887596 -161086544 - AluSp SINE Alu -2 311 1 2416 79 0 0 chrX 15887601 15887893 -161086247 - AluSg SINE Alu -18 292 1 1793 148 0 7 chrX 15887895 15888178 -161085962 - AluJb SINE Alu -6 306 26 438 175 0 12 chrX 15888183 15888263 -161085877 - MER5A DNA MER1_type -110 79 1 2423 65 0 0 chrX 15889090 15889380 -161084760 - AluY SINE Alu -21 290 1 648 208 8 0 chrX 15889748 15889878 -161084262 - FLAM_A SINE Alu -2 131 1 22 56 0 0 chrX 15891373 15891409 -161082731 + AT_rich Low_complexity Low_complexity 1 36 0 435 251 34 75 chrX 15892610 15892785 -161081355 + MIR3 SINE MIR 1 169 -39 1098 170 25 5 chrX 15893732 15893932 -161080208 - MER20B DNA MER1_type -2 217 14 278 276 0 87 chrX 15893980 15894107 -161080033 - MER5B DNA MER1_type -61 117 2 1180 258 64 35 chrX 15894428 15894882 -161079258 - L1MC4a LINE L1 -1870 5938 5472 1305 144 16 70 chrX 15894991 15895248 -161078892 + AluJo SINE Alu 21 263 -49 860 196 55 37 chrX 15895259 15895516 -161078624 - L1MA9 LINE L1 -21 6313 6038 2365 115 0 0 chrX 15895881 15896194 -161077946 + AluSq SINE Alu 1 313 0 2091 42 0 4 chrX 15896449 15896688 -161077452 + L1PA7 LINE L1 5912 6149 -5 267 248 71 14 chrX 15896890 15897031 -161077109 - L1 LINE L1 -3322 2824 2676 410 202 30 30 chrX 15897699 15897798 -161076342 + Charlie5 DNA MER1_type 7 105 -2507 1600 160 96 0 chrX 15897802 15898145 -161075995 + Charlie5 DNA MER1_type 2235 2610 -2 2445 80 3 3 chrX 15898152 15898463 -161075677 - AluSp SINE Alu -2 311 1 2394 88 7 0 chrX 15898570 15898876 -161075264 + AluSc SINE Alu 1 308 -1 2070 121 0 0 chrX 15898903 15899213 -161074927 - AluSx SINE Alu 0 310 1 2263 81 0 0 chrX 15899860 15900190 -161073950 - AluSx SINE Alu 0 330 1 1894 154 0 7 chrX 15900853 15901145 -161072995 + AluJb SINE Alu 3 292 -20 302 214 12 0 chrX 15901145 15901229 -161072911 + GA-rich Low_complexity Low_complexity 1 85 0 1230 204 94 28 chrX 15901696 15902015 -161072125 - MER2 DNA MER2_type 0 345 6 1217 164 23 0 chrX 15902015 15902229 -161071911 - L1MC1 LINE L1 -28 6305 6087 935 178 35 6 chrX 15902231 15902405 -161071735 + MER58A DNA MER1_type 46 224 0 2099 116 0 47 chrX 15903639 15903958 -161070182 + AluSx SINE Alu 1 304 -8 2177 105 10 13 chrX 15904978 15905284 -161068856 + AluSx SINE Alu 1 305 -7 279 218 277 0 chrX 15905362 15905463 -161068677 - MIR SINE MIR -71 191 63 424 318 35 35 chrX 15905897 15906070 -161068070 + MER5B DNA MER1_type 4 176 -2 2314 58 48 0 chrX 15906514 15906807 -161067333 - AluY SINE Alu -4 307 1 2177 128 178 8 chrX 15906984 15907350 -161066790 + MSTA LTR MaLR 1 428 0 283 258 72 21 chrX 15907350 15907447 -161066693 - MIR3 SINE MIR -42 166 65 211 300 171 21 chrX 15907506 15907646 -161066494 - MIR SINE MIR -25 237 77 1953 123 7 3 chrX 15907682 15907966 -161066174 - AluSx SINE Alu -7 305 21 577 294 94 5 chrX 15908258 15908459 -161065681 + MIR SINE MIR 40 258 -4 1888 104 29 14 chrX 15909206 15909485 -161064655 - AluJb SINE Alu -29 283 1 2018 126 17 7 chrX 15909491 15909785 -161064355 - AluSx SINE Alu -15 297 1 242 191 0 0 chrX 15909788 15909830 -161064310 - L2 LINE L2 -15 3298 3257 718 197 5 103 chrX 15910275 15910322 -161063818 - L1MC4 LINE L1 -96 7946 7896 189 0 0 0 chrX 15910322 15910343 -161063797 + (TC)n Simple_repeat Simple_repeat 1 21 0 718 197 5 103 chrX 15910343 15910508 -161063632 - L1MC4 LINE L1 -146 7896 7755 2325 110 0 0 chrX 15910542 15910852 -161063288 + AluSx SINE Alu 1 310 -2 362 244 78 17 chrX 15911283 15911398 -161062742 + HAL1 LINE L1 788 909 -1598 933 254 149 20 chrX 15911505 15911985 -161062155 + MLT1G LTR MaLR 7 528 -62 1856 144 7 3 chrX 15912107 15912391 -161061749 - AluJo SINE Alu -11 301 17 656 131 28 0 chrX 15912808 15912982 -161061158 + L1PA16 LINE L1 5945 6158 -8 887 86 0 0 chrX 15913391 15913507 -161060633 + AluSp/q SINE Alu 194 309 -4 2343 85 0 26 chrX 15913883 15914190 -161059950 + AluSx SINE Alu 1 299 -13 2362 113 0 0 chrX 15914879 15915189 -161058951 + AluSx SINE Alu 1 310 -2 206 289 93 41 chrX 15915246 15915343 -161058797 - L2 LINE L2 -15 3298 3197 764 189 0 8 chrX 15915625 15915752 -161058388 - FLAM_A SINE Alu -6 127 2 346 342 45 7 chrX 15915752 15915907 -161058233 - MIR SINE MIR -56 206 46 765 235 132 15 chrX 15915953 15916225 -161057915 + MER46C DNA MER2_type 1 304 -34 270 281 90 0 chrX 15916393 15916482 -161057658 - L1MC4a LINE L1 -1213 6595 6499 1662 84 0 9 chrX 15916517 15916731 -161057409 + AluSq SINE Alu 11 222 -91 314 45 0 0 chrX 15916731 15916775 -161057365 + AluSq SINE Alu 259 302 0 1823 179 126 29 chrX 15916778 15917149 -161056991 - MER31B LTR ERV1 -5 461 43 1842 123 69 0 chrX 15917149 15917426 -161056714 + AluJb SINE Alu 1 296 -16 1823 179 126 29 chrX 15917426 15917474 -161056666 - MER31B LTR ERV1 -423 43 1 21 0 0 0 chrX 15917653 15917674 -161056466 + AT_rich Low_complexity Low_complexity 1 21 0 566 158 0 0 chrX 15917701 15917783 -161056357 - Tigger5 DNA MER2_type 0 2323 2242 2128 120 7 0 chrX 15917783 15918074 -161056066 + AluSx SINE Alu 1 293 -19 261 222 0 0 chrX 15918120 15918165 -161055975 - Tigger5 DNA MER2_type -2277 46 2 2337 75 10 0 chrX 15918196 15918490 -161055650 + AluY SINE Alu 1 297 -14 439 269 136 13 chrX 15919179 15919347 -161054793 - MIR SINE MIR -50 158 4 1229 254 119 53 chrX 15920897 15921461 -161052679 - MER21B LTR ERV1 -245 618 18 631 191 30 176 chrX 15921610 15921770 -161052370 - L1MC4 LINE L1 -1 8041 7974 222 37 0 0 chrX 15921770 15921797 -161052343 + (CA)n Simple_repeat Simple_repeat 1 27 0 631 191 30 176 chrX 15921797 15922040 -161052100 - L1MC4 LINE L1 -68 7974 7697 207 0 0 0 chrX 15922045 15922068 -161052072 + (T)n Simple_repeat Simple_repeat 1 23 0 2501 71 3 0 chrX 15922248 15922556 -161051584 - AluY SINE Alu -2 309 1 2330 109 0 3 chrX 15922750 15923062 -161051078 - AluSx SINE Alu -1 311 1 471 248 59 45 chrX 15923814 15924059 -161050081 - MLT1K LTR MaLR -178 410 147 513 271 47 16 chrX 15925130 15925259 -161048881 - MIR3 SINE MIR -31 177 45 1485 179 99 43 chrX 15925587 15925911 -161048229 - MER2 DNA MER2_type -1 343 2 373 271 14 75 chrX 15926753 15926908 -161047232 - L1ME4a LINE L1 -296 5825 5683 2075 103 11 4 chrX 15926908 15927215 -161046925 + AluSx SINE Alu 1 309 0 373 271 14 75 chrX 15927215 15927271 -161046869 - L1ME4a LINE L1 -438 5683 5625 303 237 156 65 chrX 15927331 15927517 -161046623 - L1ME4a LINE L1 -2336 5472 5270 2065 92 7 11 chrX 15928074 15928347 -161045793 + AluSg SINE Alu 35 306 -4 2351 136 7 69 chrX 15932140 15932275 -161041865 - L1MB8 LINE L1 -6 6172 6030 2489 93 0 0 chrX 15932275 15932585 -161041555 - AluSg SINE Alu 0 310 1 2351 136 7 69 chrX 15932585 15932897 -161041243 - L1MB8 LINE L1 -148 6030 5753 437 265 75 7 chrX 15932898 15933045 -161041095 + MIR SINE MIR 85 241 -21 24 0 0 0 chrX 15933156 15933180 -161040960 + AT_rich Low_complexity Low_complexity 1 24 0 815 176 123 28 chrX 15933201 15933485 -161040655 + L1MC5 LINE L1 7603 7913 -48 2274 127 140 11 chrX 15933493 15933872 -161040268 - MSTA LTR MaLR 0 428 1 2250 90 3 17 chrX 15934192 15934493 -161039647 - AluSx SINE Alu -15 297 1 249 211 0 0 chrX 15934966 15935023 -161039117 + (CA)n Simple_repeat Simple_repeat 2 58 0 2435 87 0 0 chrX 15937042 15937341 -161036799 + AluSq SINE Alu 1 299 -14 1505 132 0 0 chrX 15938040 15938253 -161035887 + AluSg/x SINE Alu 82 294 -16 28 29 0 0 chrX 15939305 15939340 -161034800 + AT_rich Low_complexity Low_complexity 1 35 0 270 304 13 0 chrX 15940282 15940361 -161033779 + MER5A DNA MER1_type 38 117 -72 2842 153 47 40 chrX 15941796 15942275 -161031865 + L1MB8 LINE L1 5624 6109 -69 2365 88 3 0 chrX 15942275 15942572 -161031568 - AluSq SINE Alu -15 298 1 2842 153 47 40 chrX 15942572 15942643 -161031497 + L1MB8 LINE L1 6109 6178 0 2354 99 0 0 chrX 15942687 15942999 -161031141 - AluSx SINE Alu 0 312 1 2352 77 0 3 chrX 15943676 15943987 -161030153 + AluSx SINE Alu 1 310 0 1060 181 0 0 chrX 15944010 15944181 -161029959 + FRAM SINE Alu 1 167 -9 387 0 0 0 chrX 15944314 15944357 -161029783 + (CA)n Simple_repeat Simple_repeat 1 43 0 757 235 83 95 chrX 15944705 15944843 -161029297 + L1ME4a LINE L1 5304 5442 -679 2405 96 0 0 chrX 15944843 15945146 -161028994 - AluSx SINE Alu -9 303 1 757 235 83 95 chrX 15945146 15945387 -161028753 + L1ME4a LINE L1 5442 5675 -446 1938 168 0 0 chrX 15945387 15945685 -161028455 + AluSx SINE Alu 1 298 -14 757 235 83 95 chrX 15945685 15945913 -161028227 + L1ME4a LINE L1 5675 5904 -217 252 264 23 35 chrX 15945924 15946011 -161028129 + L1ME4a LINE L1 5961 6046 -75 373 280 54 71 chrX 15946254 15946473 -161027667 - L1MC/D LINE L1 -2012 5796 5580 2196 136 0 0 chrX 15946473 15946782 -161027358 + AluJb SINE Alu 1 309 -3 373 280 54 71 chrX 15946782 15946801 -161027339 - L1MC/D LINE L1 -2228 5580 5562 2391 98 0 13 chrX 15948100 15948416 -161025724 + AluSx SINE Alu 1 312 0 2014 175 37 14 chrX 15948485 15948839 -161025301 - MLT1A1 LTR MaLR 0 365 4 461 214 160 15 chrX 15949500 15949631 -161024509 + HAL1 LINE L1 1548 1697 -810 236 132 0 0 chrX 15950160 15950198 -161023942 + HAL1b LINE L1 746 783 -565 * 239 296 106 38 chrX 15950195 15950327 -161023813 + HAL1 LINE L1 2352 2492 -15 2326 91 3 0 chrX 15950352 15950659 -161023481 + AluSx SINE Alu 1 308 -4 382 294 59 17 chrX 15951421 15951540 -161022600 - MIR SINE MIR -82 126 3 183 222 0 0 chrX 15952770 15952815 -161021325 + A-rich Low_complexity Low_complexity 1 45 0 26 74 0 0 chrX 15954112 15954166 -161019974 + AT_rich Low_complexity Low_complexity 1 54 0 298 227 182 11 chrX 15954815 15954903 -161019237 - MIR SINE MIR -61 147 45 2160 103 3 7 chrX 15954972 15955263 -161018877 + AluSx SINE Alu 21 310 -2 190 239 299 45 chrX 15955350 15955484 -161018656 + L2 LINE L2 2917 3084 -188 476 291 130 5 chrX 15955858 15956082 -161018058 - MIR SINE MIR -13 249 15 306 0 0 0 chrX 15956526 15956560 -161017580 + (TG)n Simple_repeat Simple_repeat 1 34 0 2071 98 22 0 chrX 15956560 15956836 -161017304 - AluSx SINE Alu -30 282 1 2263 100 3 3 chrX 15957460 15957760 -161016380 + AluSx SINE Alu 1 300 -12 346 273 0 27 chrX 15958245 15958355 -161015785 - L1MC4a LINE L1 -1913 5895 5789 1206 139 31 76 chrX 15958356 15958579 -161015561 + MER46A DNA MER2_type 3 215 -21 2458 87 0 3 chrX 15958602 15958914 -161015226 - AluSx SINE Alu -1 311 1 2492 133 12 38 chrX 15959765 15960143 -161013997 + L1MB3 LINE L1 5771 6138 -45 1890 135 0 30 chrX 15960143 15960446 -161013694 + AluJo SINE Alu 1 294 -18 2492 133 12 38 chrX 15960446 15960489 -161013651 + L1MB3 LINE L1 6138 6181 -2 521 251 90 59 chrX 15960659 15960699 -161013441 - L1ME4a LINE L1 -16 6105 6068 2346 115 0 0 chrX 15960699 15961011 -161013129 + AluSx SINE Alu 1 312 0 521 251 90 59 chrX 15961011 15961225 -161012915 - L1ME4a LINE L1 -53 6068 5843 1043 123 0 0 chrX 15961233 15961379 -161012761 - AluSg/x SINE Alu -84 228 83 472 189 33 26 chrX 15961379 15961532 -161012608 + GA-rich Low_complexity Low_complexity 3 156 0 497 294 94 39 chrX 15961542 15961902 -161012238 - L1MC4 LINE L1 -565 7477 7098 303 155 10 32 chrX 15962126 15962206 -161011934 - L1ME3A LINE L1 0 6162 6082 * 444 176 219 58 chrX 15962202 15962407 -161011733 - L1ME3 LINE L1 -119 6045 5808 * 672 286 85 48 chrX 15962397 15962584 -161011556 - L1MC4a LINE L1 -891 6917 6738 2239 98 3 49 chrX 15962584 15962909 -161011231 - AluSx SINE Alu -2 310 1 672 286 85 48 chrX 15962909 15963074 -161011066 - L1MC4a LINE L1 -1070 6738 6552 835 166 26 67 chrX 15963902 15963973 -161010167 - L1MB7 LINE L1 -1 6183 6111 2113 107 20 3 chrX 15963973 15964272 -161009868 + AluSx SINE Alu 1 304 -8 835 166 26 67 chrX 15964272 15964393 -161009747 - L1MB7 LINE L1 -73 6111 5999 2373 99 0 3 chrX 15966374 15966687 -161007453 - AluSx SINE Alu 0 312 1 253 158 0 0 chrX 15967392 15967430 -161006710 + MIR SINE MIR 211 248 -14 250 189 38 0 chrX 15967393 15967446 -161006694 + L2 LINE L2 3257 3311 -2 * 841 220 137 73 chrX 15968186 15968640 -161005500 - HAL1b LINE L1 -598 750 268 2081 123 3 0 chrX 15968907 15969225 -161004915 - AluSx SINE Alu 0 319 1 499 287 32 16 chrX 15971231 15971419 -161002721 - L2 LINE L2 -27 3286 3096 390 273 0 66 chrX 15976260 15976381 -160997759 + MER94 DNA DNA 7 119 -15 321 239 56 70 chrX 15976386 15976528 -160997612 + MER5A DNA MER1_type 18 157 -32 241 158 0 0 chrX 15976956 15976994 -160997146 + MIR SINE MIR 114 151 -57 2006 133 0 7 chrX 15976995 15977280 -160996860 + AluJb SINE Alu 3 285 -27 270 0 0 0 chrX 15977280 15977310 -160996830 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1052 156 89 0 chrX 15977892 15978072 -160996068 + MER3 DNA MER1_type 10 205 -4 304 239 217 0 chrX 15978434 15978526 -160995614 + MER5B DNA MER1_type 67 178 0 219 36 0 0 chrX 15979779 15979807 -160994333 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 438 20 0 0 chrX 15980114 15980165 -160993975 + (TG)n Simple_repeat Simple_repeat 1 51 0 2086 98 25 0 chrX 15980171 15980447 -160993693 - AluSg SINE Alu -27 283 1 2410 173 53 25 chrX 15980631 15981117 -160993023 + MLT1D LTR MaLR 6 505 0 2226 86 0 51 chrX 15981632 15981946 -160992194 + AluSx SINE Alu 1 298 -14 288 228 89 0 chrX 15983217 15983296 -160990844 - MIR SINE MIR -85 123 38 2357 112 0 0 chrX 15984511 15984824 -160989316 + AluSq SINE Alu 1 313 0 654 93 43 22 chrX 15984832 15984971 -160989169 + GA-rich Low_complexity Low_complexity 3 144 0 2503 84 3 0 chrX 15988196 15988505 -160985635 - AluSx SINE Alu -2 310 1 356 264 110 81 chrX 15988543 15989035 -160985105 - L2 LINE L2 -1 3312 2807 817 264 83 40 chrX 15989108 15989377 -160984763 - L2 LINE L2 -421 2893 2604 2092 120 3 3 chrX 15989377 15989677 -160984463 + AluSx SINE Alu 1 300 -12 817 264 83 40 chrX 15989677 15989756 -160984384 - L2 LINE L2 -710 2604 2530 245 111 278 0 chrX 15989764 15989818 -160984322 - L1ME1 LINE L1 -3 6163 6095 653 229 98 0 chrX 15992207 15992360 -160981780 + MIR SINE MIR 92 259 -3 2291 102 0 3 chrX 15992535 15992830 -160981310 - AluSx SINE Alu -18 294 1 672 272 60 5 chrX 15992999 15993183 -160980957 + MIR SINE MIR 66 259 -3 477 233 62 52 chrX 15993256 15993449 -160980691 + MIR3 SINE MIR 5 199 -9 28 48 0 0 chrX 15994158 15994200 -160979940 + AT_rich Low_complexity Low_complexity 1 42 0 4056 32 0 0 chrX 15994240 15994706 -160979434 + L1PA7 LINE L1 5669 6134 -20 457 248 64 0 chrX 15995092 15995233 -160978907 + MIR SINE MIR 73 222 -40 909 132 0 0 chrX 15995234 15995363 -160978777 + FLAM_A SINE Alu 3 131 -2 204 139 0 0 chrX 15995441 15995477 -160978663 + MIR SINE MIR 213 248 -14 315 341 77 57 chrX 15995890 15996118 -160978022 + L2 LINE L2 2894 3133 -139 1771 163 57 0 chrX 15996118 15996400 -160977740 + AluJb SINE Alu 1 298 -14 315 341 77 57 chrX 15996400 15996537 -160977603 + L2 LINE L2 3133 3266 -6 301 311 87 66 chrX 15998272 15998558 -160975582 + L2 LINE L2 2979 3270 -2 1432 211 109 54 chrX 15999868 16000347 -160973793 + MLT1F1 LTR MaLR 51 555 -12 379 227 193 13 chrX 16000616 16000766 -160973374 + MER5A DNA MER1_type 13 189 0 1823 149 21 3 chrX 16000854 16001136 -160973004 + AluJo SINE Alu 1 287 -25 241 385 89 0 chrX 16003041 16003210 -160970930 + L3 LINE CR1 1384 1567 -10 192 216 0 0 chrX 16004565 16004602 -160969538 - MIR SINE MIR -70 192 156 201 39 0 0 chrX 16004957 16004983 -160969157 + (TG)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chrX 16005158 16005181 -160968959 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 971 182 101 0 chrX 16005433 16005631 -160968509 - MER20 DNA MER1_type -1 218 1 189 0 0 0 chrX 16005699 16005720 -160968420 + (TTA)n Simple_repeat Simple_repeat 1 21 0 339 220 10 30 chrX 16005766 16005866 -160968274 + MIR SINE MIR 152 249 -13 763 282 13 0 chrX 16006408 16006635 -160967505 - MIR SINE MIR -11 251 22 2395 76 3 3 chrX 16007593 16007895 -160966245 - AluY SINE Alu -9 302 1 2159 121 3 0 chrX 16008235 16008525 -160965615 - AluSx SINE Alu -21 291 1 2399 112 33 0 chrX 16008572 16008937 -160965203 - L1MA6 LINE L1 -6 6294 5918 937 160 1 0 chrX 16008937 16009096 -160965044 + L1MA6 LINE L1 5781 5940 -222 962 277 88 11 chrX 16009190 16009697 -160964443 + L2 LINE L2 2450 3016 -297 1040 81 7 0 chrX 16009711 16009847 -160964293 - AluSp/q SINE Alu -7 306 170 331 259 233 0 chrX 16009850 16010043 -160964097 + L2 LINE L2 3075 3312 -1 26 50 0 0 chrX 16010071 16010111 -160964029 + AT_rich Low_complexity Low_complexity 1 40 0 861 151 0 22 chrX 16010132 16010311 -160963829 + CT-rich Low_complexity Low_complexity 2 176 0 2358 113 0 0 chrX 16010318 16010629 -160963511 - AluSx SINE Alu -1 311 1 421 264 84 39 chrX 16010807 16010962 -160963178 - MER5A DNA MER1_type -23 166 5 335 225 167 10 chrX 16011657 16011773 -160962367 + MIR SINE MIR 3 141 -67 2377 99 0 3 chrX 16012398 16012701 -160961439 + AluSx SINE Alu 1 302 -10 22 0 0 0 chrX 16012761 16012783 -160961357 + AT_rich Low_complexity Low_complexity 1 22 0 2177 137 0 0 chrX 16013110 16013409 -160960731 + AluSx SINE Alu 1 299 -13 2600 64 0 3 chrX 16013912 16014224 -160959916 - AluY SINE Alu 0 311 1 225 234 143 143 chrX 16014260 16014414 -160959726 + MIR SINE MIR 38 191 -71 1527 244 70 38 chrX 16014430 16014929 -160959211 + LTR33 LTR ERVL 6 520 -1 293 326 0 0 chrX 16015580 16015678 -160958462 + L1MC4a LINE L1 5814 5911 -1897 242 271 0 0 chrX 16015716 16015764 -160958376 + polypurine Low_complexity Low_complexity 2 49 0 2423 109 0 0 chrX 16015787 16016100 -160958040 + AluSq SINE Alu 1 313 0 565 126 18 63 chrX 16016111 16016222 -160957918 - MER3 DNA MER1_type -5 204 99 2605 242 51 57 chrX 16016579 16017116 -160957024 - L2 LINE L2 -13 3300 2761 1878 108 35 0 chrX 16017116 16017375 -160956765 - AluSx SINE Alu -15 297 30 2605 242 51 57 chrX 16017375 16017987 -160956153 - L2 LINE L2 -552 2761 2142 473 273 15 8 chrX 16018022 16018154 -160955986 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 16018211 16018232 -160955908 + AT_rich Low_complexity Low_complexity 1 21 0 1472 253 145 37 chrX 16018248 16018980 -160955160 - L1ME4a LINE L1 -3 6118 5308 2017 137 26 7 chrX 16019063 16019369 -160954771 + AluJb SINE Alu 1 312 0 520 221 12 23 chrX 16019647 16019822 -160954318 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 16019986 16020021 -160954119 + AT_rich Low_complexity Low_complexity 1 35 0 2460 81 0 0 chrX 16020064 16020373 -160953767 - AluY SINE Alu -2 309 1 2275 105 0 0 chrX 16020715 16021001 -160953139 - AluSx SINE Alu -26 286 1 266 86 0 0 chrX 16021281 16021316 -160952824 - U2 snRNA snRNA -152 36 2 351 44 0 0 chrX 16021798 16021843 -160952297 + (CA)n Simple_repeat Simple_repeat 1 45 0 2422 97 0 0 chrX 16022845 16023154 -160950986 + AluSx SINE Alu 1 309 -3 37 0 0 0 chrX 16023202 16023239 -160950901 + AT_rich Low_complexity Low_complexity 1 37 0 2141 117 7 0 chrX 16023470 16023760 -160950380 - AluSx SINE Alu -20 292 1 1373 135 4 52 chrX 16024194 16024424 -160949716 - MER20 DNA MER1_type 0 219 1 2088 101 0 14 chrX 16024485 16024803 -160949337 - AluSx SINE Alu 0 314 1 339 246 77 46 chrX 16025030 16025160 -160948980 - MIR SINE MIR -73 189 56 242 187 9 131 chrX 16025292 16025399 -160948741 - L1MC5 LINE L1 -60 7901 7808 1209 176 9 27 chrX 16025399 16025457 -160948683 - MER20 DNA MER1_type -1 218 160 2343 218 80 13 chrX 16025457 16025984 -160948156 - REP3 LTR ERV 0 562 1 1209 176 9 27 chrX 16025984 16026147 -160947993 - MER20 DNA MER1_type -59 160 1 2440 181 85 93 chrX 16026167 16026264 -160947876 - L1MC5 LINE L1 -200 7761 7665 1683 161 0 25 chrX 16026264 16026549 -160947591 - AluSx SINE Alu -24 288 11 2440 181 85 93 chrX 16026549 16027368 -160946772 - L1MC5 LINE L1 -296 7665 6852 226 227 0 0 chrX 16027450 16027494 -160946646 + MARNA DNA Mariner 412 455 -131 2469 102 0 0 chrX 16027731 16028044 -160946096 - AluSq SINE Alu 0 313 1 613 197 47 8 chrX 16028315 16028442 -160945698 + MER5B DNA MER1_type 43 174 -4 2525 140 34 5 chrX 16028499 16028884 -160945256 + MSTD LTR MaLR 1 396 0 465 289 16 8 chrX 16029318 16029446 -160944694 + MIR SINE MIR 22 150 -112 2690 155 21 56 chrX 16029596 16030112 -160944028 + MLT1D LTR MaLR 1 498 -7 331 206 19 136 chrX 16030477 16030632 -160943508 + L1ME LINE L1 5541 5677 -444 2086 94 87 0 chrX 16031608 16031895 -160942245 + AluSx SINE Alu 1 312 0 2382 69 6 41 chrX 16032286 16032604 -160941536 - AluSq SINE Alu -6 307 1 433 282 80 1 chrX 16033191 16033332 -160940808 - MIR SINE MIR -73 189 40 2280 87 3 20 chrX 16033480 16033779 -160940361 - AluSx SINE Alu -18 294 1 264 310 30 0 chrX 16034274 16034374 -160939766 - MIR SINE MIR -108 154 52 239 268 37 12 chrX 16035076 16035158 -160938982 - L2 LINE L2 -36 3236 3153 206 292 14 0 chrX 16035440 16035512 -160938628 + MIR SINE MIR 20 92 -170 290 248 233 16 chrX 16036092 16036221 -160937919 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 16036252 16036288 -160937852 + AT_rich Low_complexity Low_complexity 1 36 0 1005 155 0 0 chrX 16036320 16036498 -160937642 - AluSg/x SINE Alu 0 311 134 354 228 18 61 chrX 16037439 16037553 -160936587 - MIR SINE MIR -2 260 152 239 306 60 48 chrX 16038374 16038555 -160935585 + MIR SINE MIR 3 186 -67 1373 135 4 52 chrX 16038661 16038891 -160935249 - MER20 DNA MER1_type 0 219 1 2282 68 4 0 chrX 16038953 16039264 -160934876 - AluY SINE Alu 0 312 1 1036 153 79 10 chrX 16039264 16039467 -160934673 - L1ME1 LINE L1 -56 6110 5894 461 240 52 31 chrX 16039467 16039659 -160934481 - L2 LINE L2 -774 2540 2345 509 271 92 44 chrX 16040324 16040785 -160933355 + L1ME4a LINE L1 5106 5585 -743 478 311 156 16 chrX 16040794 16041218 -160932922 + L1ME4a LINE L1 5634 6116 -5 2349 108 0 0 chrX 16042281 16042588 -160931552 + AluSg SINE Alu 1 307 -3 1744 144 0 62 chrX 16042865 16043170 -160930970 + AluJo SINE Alu 3 288 -24 431 285 8 0 chrX 16043189 16043319 -160930821 - MIR SINE MIR -63 199 69 2166 113 3 17 chrX 16043425 16043716 -160930424 + AluSx SINE Alu 1 287 -25 23 33 0 0 chrX 16043733 16043763 -160930377 + AT_rich Low_complexity Low_complexity 1 30 0 3561 145 78 10 chrX 16043887 16044514 -160929626 + L1MB4 LINE L1 5472 6141 -39 2098 106 7 14 chrX 16044514 16044806 -160929334 + AluSx SINE Alu 1 290 -22 1894 97 0 16 chrX 16045241 16045526 -160928614 + AluSx SINE Alu 41 321 0 279 146 0 0 chrX 16045593 16045648 -160928492 + (CAT)n Simple_repeat Simple_repeat 2 56 0 633 202 0 0 chrX 16045765 16045869 -160928271 + FRAM SINE Alu 11 114 -62 1357 176 0 0 chrX 16045869 16046073 -160928067 + AluJo SINE Alu 85 288 -24 200 121 30 0 chrX 16046334 16046367 -160927773 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 273 119 0 0 chrX 16046367 16046409 -160927731 + (CA)n Simple_repeat Simple_repeat 2 43 0 183 100 0 0 chrX 16046485 16046515 -160927625 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 290 197 28 0 chrX 16047014 16047085 -160927055 + (CATA)n Simple_repeat Simple_repeat 2 74 0 * 849 181 0 0 chrX 16047082 16047259 -160926881 + (CA)n Simple_repeat Simple_repeat 2 178 0 1945 113 4 8 chrX 16047271 16047536 -160926604 - AluSx SINE Alu -25 287 24 2167 137 0 0 chrX 16047986 16048285 -160925855 + AluSx SINE Alu 1 299 -13 7008 205 97 52 chrX 16048741 16048789 -160925351 + Charlie2a DNA MER1_type 5 49 -2813 2556 71 3 0 chrX 16048789 16049098 -160925042 - AluSg SINE Alu 0 310 1 7008 205 97 52 chrX 16049098 16050161 -160923979 + Charlie2a DNA MER1_type 49 1063 -1799 309 26 0 0 chrX 16050161 16050199 -160923941 + (CA)n Simple_repeat Simple_repeat 2 39 0 7008 205 97 52 chrX 16050199 16051564 -160922576 + Charlie2a DNA MER1_type 1063 2690 -172 2012 92 29 25 chrX 16051564 16051883 -160922257 - AluSx SINE Alu 0 320 1 7008 205 97 52 chrX 16051883 16051911 -160922229 + Charlie2a DNA MER1_type 2690 2715 -147 2077 167 78 5 chrX 16051912 16052296 -160921844 + L1MC1 LINE L1 20 431 -5995 6012 164 27 68 chrX 16052324 16052887 -160921253 + L1MC1 LINE L1 4924 5508 -1105 2315 103 0 0 chrX 16052887 16053187 -160920953 + AluSx SINE Alu 1 300 -12 6012 164 27 68 chrX 16053187 16053541 -160920599 + L1MC1 LINE L1 5508 5875 -738 296 103 0 0 chrX 16053541 16053580 -160920560 - tRNA-Cys-TGC tRNA tRNA -34 41 3 6012 164 27 68 chrX 16053580 16054379 -160919761 + L1MC1 LINE L1 5875 6607 -6 451 183 17 128 chrX 16054382 16054462 -160919678 + Charlie2a DNA MER1_type 2698 2750 -112 2054 124 0 0 chrX 16054462 16054780 -160919360 - AluSx SINE Alu 0 318 1 451 183 17 128 chrX 16054780 16054878 -160919262 + Charlie2a DNA MER1_type 2750 2857 -5 1830 232 42 32 chrX 16054891 16055113 -160919027 + MER20B DNA MER1_type 1 219 -564 1962 141 6 35 chrX 16055113 16055426 -160918714 + AluJb SINE Alu 1 304 -8 1830 232 42 32 chrX 16055426 16055677 -160918463 + MER20B DNA MER1_type 219 479 -304 2296 100 0 13 chrX 16055767 16056067 -160918073 - AluSx SINE Alu -16 296 1 1035 217 0 0 chrX 16056221 16056396 -160917744 - FAM SINE Alu 0 175 1 1084 221 82 20 chrX 16057023 16057317 -160916823 + L2 LINE L2 2997 3308 -5 1017 78 31 0 chrX 16057319 16057448 -160916692 + AluSq/x SINE Alu 1 133 -180 2389 92 3 0 chrX 16057451 16057754 -160916386 + AluSg SINE Alu 1 304 -6 2074 113 3 11 chrX 16058258 16058565 -160915575 + AluSx SINE Alu 1 305 0 798 194 145 16 chrX 16059954 16060140 -160914000 - MER63A DNA MER1_type 0 210 1 2394 88 0 0 chrX 16060838 16061133 -160913007 - AluSg SINE Alu -3 307 13 241 186 12 198 chrX 16061368 16061485 -160912655 + HAL1 LINE L1 2371 2450 -57 1919 133 7 7 chrX 16061485 16061770 -160912370 + AluSx SINE Alu 1 285 -27 241 186 12 198 chrX 16061770 16061819 -160912321 + HAL1 LINE L1 2450 2506 -1 1170 194 73 118 chrX 16062417 16062967 -160911173 + L1MC5 LINE L1 7405 7929 -32 2259 181 19 67 chrX 16063193 16063366 -160910774 + MLT1E LTR MaLR 8 188 -405 2295 98 6 16 chrX 16063366 16063682 -160910458 + AluSq SINE Alu 1 313 0 2259 181 19 67 chrX 16063682 16063988 -160910152 + MLT1E LTR MaLR 188 464 -129 1702 190 37 32 chrX 16063991 16064453 -160909687 + L1ME LINE L1 5162 5625 -541 451 217 47 54 chrX 16064652 16064781 -160909359 - MIR SINE MIR -59 203 76 23 54 0 0 chrX 16064997 16065034 -160909106 + AT_rich Low_complexity Low_complexity 1 37 0 376 209 31 110 chrX 16065035 16065226 -160908914 - MER113 DNA MER1_type? -314 207 32 2092 146 7 0 chrX 16065347 16065693 -160908447 + AluJb SINE Alu 1 348 0 858 146 15 0 chrX 16066090 16066220 -160907920 + AluSq/x SINE Alu 1 132 -180 360 55 0 55 chrX 16066587 16066642 -160907498 + MER5A DNA MER1_type 3 54 -135 1283 78 0 0 chrX 16066642 16066796 -160907344 - AluSx SINE Alu -158 154 1 1781 130 4 0 chrX 16067145 16067392 -160906748 - AluSq SINE Alu -17 296 49 336 268 52 0 chrX 16067401 16067498 -160906642 - L2 LINE L2 0 3313 3212 333 299 67 39 chrX 16067574 16067755 -160906385 + MIR SINE MIR 3 186 -67 2460 72 0 13 chrX 16067905 16068212 -160905928 - AluSx SINE Alu -9 303 1 503 254 65 41 chrX 16068270 16068439 -160905701 + MER5A DNA MER1_type 15 187 -2 637 297 89 32 chrX 16068567 16068642 -160905498 + MIR SINE MIR 3 72 -190 1057 171 44 0 chrX 16068642 16068823 -160905317 + MER5A DNA MER1_type 1 189 0 637 297 89 32 chrX 16068823 16068993 -160905147 + MIR SINE MIR 72 262 0 2257 99 0 0 chrX 16069102 16069421 -160904719 - AluSx SINE Alu 0 319 1 472 282 80 1 chrX 16070008 16070149 -160903991 - MIR SINE MIR -73 189 40 2264 87 3 20 chrX 16070297 16070597 -160903543 - AluSx SINE Alu -17 295 1 324 293 36 111 chrX 16070967 16071192 -160902948 - MIR SINE MIR -3 259 52 280 263 61 35 chrX 16071862 16071976 -160902164 - L2 LINE L2 -3 3269 3153 241 271 10 73 chrX 16072234 16072330 -160901810 + MIR SINE MIR 3 92 -170 330 248 233 16 chrX 16072910 16073039 -160901101 + MIR SINE MIR 82 238 -24 22 56 0 0 chrX 16073070 16073106 -160901034 + AT_rich Low_complexity Low_complexity 1 36 0 1015 149 0 0 chrX 16073138 16073316 -160900824 - AluSg/x SINE Alu 0 313 136 186 265 44 29 chrX 16073926 16073994 -160900146 + MIR SINE MIR 40 108 -100 386 228 18 61 chrX 16074257 16074371 -160899769 - MIR SINE MIR -2 260 152 411 21 0 0 chrX 16075036 16075084 -160899056 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 30 0 0 chrX 16075084 16075117 -160899023 - L1PA6 LINE L1 -18 6136 6104 2629 47 7 0 chrX 16075652 16075953 -160898187 - AluY SINE Alu -8 303 1 267 234 143 143 chrX 16075989 16076143 -160897997 + MIR SINE MIR 38 191 -71 1505 246 70 38 chrX 16076159 16076658 -160897482 + LTR33 LTR ERVL 6 520 -1 242 271 0 0 chrX 16077445 16077493 -160896647 + polypurine Low_complexity Low_complexity 2 49 0 2408 109 0 0 chrX 16077516 16077829 -160896311 + AluSq SINE Alu 1 313 0 1255 135 14 34 chrX 16077840 16078048 -160896092 - MER3 DNA MER1_type -5 204 1 2863 246 47 53 chrX 16078479 16079021 -160895119 - L2 LINE L2 -7 3306 2762 1861 108 35 0 chrX 16079021 16079280 -160894860 - AluSx SINE Alu -15 297 30 2863 246 47 53 chrX 16079280 16079892 -160894248 - L2 LINE L2 -551 2762 2142 514 273 15 8 chrX 16079927 16080059 -160894081 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 16080116 16080137 -160894003 + AT_rich Low_complexity Low_complexity 1 21 0 1538 253 145 37 chrX 16080153 16080885 -160893255 - L1ME4a LINE L1 -3 6118 5308 2000 137 26 7 chrX 16080968 16081274 -160892866 + AluJb SINE Alu 1 312 0 528 221 12 23 chrX 16081552 16081727 -160892413 + HsTC2 DNA Tc2 2 1894 -4 21 57 0 0 chrX 16081891 16081926 -160892214 + AT_rich Low_complexity Low_complexity 1 35 0 2433 81 0 0 chrX 16081969 16082278 -160891862 - AluY SINE Alu -2 309 1 2369 67 0 0 chrX 16082599 16082905 -160891235 - AluY SINE Alu 0 306 1 1201 194 0 28 chrX 16083150 16083367 -160890773 + MER6A DNA MER2_type 4 214 -391 1493 75 5 0 chrX 16083367 16083553 -160890587 + AluSx SINE Alu 1 187 -125 605 67 27 0 chrX 16083553 16083628 -160890512 + AluSx SINE Alu 218 294 -16 1549 132 23 12 chrX 16083630 16083887 -160890253 + MER6A DNA MER2_type 204 463 -142 2957 67 0 97 chrX 16084329 16084611 -160889529 + L1MA4A LINE L1 5882 6190 -113 2431 92 0 0 chrX 16084611 16084917 -160889223 + AluSx SINE Alu 1 306 -6 2957 67 0 97 chrX 16084917 16085075 -160889065 + L1MA4A LINE L1 6190 6278 -25 2104 102 3 3 chrX 16085075 16085358 -160888782 + AluSx SINE Alu 1 283 -29 2957 67 0 97 chrX 16085358 16085378 -160888762 + L1MA4A LINE L1 6278 6298 -5 1053 151 0 0 chrX 16085386 16085545 -160888595 + MER6A DNA MER2_type 447 605 0 * 4713 174 85 52 chrX 16085545 16085607 -160888533 + Charlie7 DNA MER1_type 92 150 -2462 1424 193 54 37 chrX 16085607 16085902 -160888238 - AluJo SINE Alu -12 300 1 4713 174 85 52 chrX 16085902 16086149 -160887991 + Charlie7 DNA MER1_type 150 388 -2224 2238 97 3 0 chrX 16086149 16086464 -160887676 + AluSg SINE Alu 1 316 0 4713 174 85 52 chrX 16086464 16087293 -160886847 + Charlie7 DNA MER1_type 388 1271 -1341 296 237 79 86 chrX 16087964 16088014 -160886126 - L1ME3A LINE L1 -1 6169 6120 2158 116 7 0 chrX 16088014 16088307 -160885833 + AluSx SINE Alu 1 295 -17 296 237 79 86 chrX 16088307 16088395 -160885745 - L1ME3A LINE L1 -50 6120 6032 1513 236 42 20 chrX 16088408 16088790 -160885350 - L1HS LINE L1 -190 5980 5600 2205 90 3 7 chrX 16089043 16089175 -160884965 + AluSx SINE Alu 1 132 -180 189 0 0 0 chrX 16089175 16089196 -160884944 + (TA)n Simple_repeat Simple_repeat 1 21 0 2205 90 3 7 chrX 16089196 16089351 -160884789 + AluSx SINE Alu 132 287 -25 384 292 123 19 chrX 16089371 16089525 -160884615 + MIR SINE MIR 87 256 -6 283 298 68 16 chrX 16090894 16091044 -160883096 - MIR3 SINE MIR -17 191 28 519 288 84 39 chrX 16091342 16091651 -160882489 + L2 LINE L2 1381 1703 -1611 284 298 12 0 chrX 16091678 16091762 -160882378 + GA-rich Low_complexity Low_complexity 1 85 0 344 315 152 4 chrX 16091840 16092097 -160882043 + L2 LINE L2 1804 2098 -1216 444 252 146 56 chrX 16092381 16092622 -160881518 + L2 LINE L2 2186 2404 -910 2265 102 3 0 chrX 16092622 16092916 -160881224 - AluSx SINE Alu -17 295 1 444 252 146 56 chrX 16092916 16093086 -160881054 + L2 LINE L2 2404 2634 -680 418 271 57 0 chrX 16093086 16093226 -160880914 - MER112 DNA MER1_type -85 175 28 1217 152 163 4 chrX 16093275 16093532 -160880608 + MER33 DNA MER1_type 27 324 0 396 0 0 0 chrX 16096133 16096177 -160877963 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 152 0 20 chrX 16096270 16096369 -160877771 + MIR SINE MIR 48 144 -118 2077 120 3 13 chrX 16096466 16096765 -160877375 + AluSx SINE Alu 1 296 -16 232 143 0 0 chrX 16097043 16097085 -160877055 - LTR66 LTR ERVL -171 439 398 689 161 0 51 chrX 16097102 16097220 -160876920 + FLAM_A SINE Alu 6 117 -25 192 40 0 0 chrX 16098162 16098187 -160875953 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 186 148 111 111 chrX 16099865 16099919 -160874221 + L3 LINE CR1 1084 1137 -440 396 274 38 0 chrX 16099983 16100089 -160874051 - MIR SINE MIR -22 240 131 234 0 0 0 chrX 16100137 16100163 -160873977 + (T)n Simple_repeat Simple_repeat 1 26 0 596 189 53 79 chrX 16100295 16100485 -160873655 + MER5A DNA MER1_type 2 186 -3 * 713 204 37 37 chrX 16100337 16100499 -160873641 - MER5A DNA MER1_type -24 165 4 547 196 87 65 chrX 16100989 16101173 -160872967 + MER5A DNA MER1_type 1 188 -1 1887 158 3 7 chrX 16102005 16102309 -160871831 - AluJb SINE Alu -9 303 1 1236 204 109 69 chrX 16102393 16102863 -160871277 + L1ME4a LINE L1 5575 6025 -96 2284 91 3 3 chrX 16102863 16103161 -160870979 + AluSc SINE Alu 1 298 -11 378 0 0 0 chrX 16103161 16103203 -160870937 + (TA)n Simple_repeat Simple_repeat 2 43 0 1236 204 109 69 chrX 16103203 16103223 -160870917 + L1ME4a LINE L1 6025 6043 -78 1851 127 58 0 chrX 16103223 16103498 -160870642 - AluJb SINE Alu -16 296 6 1236 204 109 69 chrX 16103498 16103530 -160870610 + L1ME4a LINE L1 6043 6120 -1 300 301 102 12 chrX 16103878 16103915 -160870225 - MIR SINE MIR -14 248 216 601 44 0 121 chrX 16103915 16103965 -160870175 - MADE1 DNA Mariner 0 80 44 2334 95 0 0 chrX 16103965 16104261 -160869879 + AluSq SINE Alu 1 296 -17 601 44 0 121 chrX 16104261 16104301 -160869839 - MADE1 DNA Mariner -36 44 1 300 301 102 12 chrX 16104301 16104429 -160869711 - MIR SINE MIR -46 216 68 2141 107 3 13 chrX 16104490 16104789 -160869351 + AluSx SINE Alu 1 296 -16 622 77 13 0 chrX 16104822 16104900 -160869240 - MADE1 DNA Mariner -1 79 1 1644 211 61 41 chrX 16104993 16105405 -160868735 + LTR16C LTR ERVL 64 483 -8 2161 118 0 20 chrX 16105441 16105746 -160868394 - AluSx SINE Alu -13 299 1 2447 70 0 19 chrX 16105781 16106095 -160868045 - AluSg SINE Alu -2 308 1 1889 156 10 7 chrX 16106157 16106465 -160867675 + AluJb SINE Alu 1 309 -3 392 314 48 18 chrX 16106781 16106958 -160867182 - MIR3 SINE MIR -69 139 2 2176 124 0 3 chrX 16107189 16107487 -160866653 + AluSx SINE Alu 1 297 -15 1968 72 7 47 chrX 16107564 16107842 -160866298 + AluSq SINE Alu 41 307 -6 2068 94 87 0 chrX 16108233 16108520 -160865620 - AluSx SINE Alu 0 312 1 339 206 19 136 chrX 16109496 16109651 -160864489 - L1ME LINE L1 -444 5677 5541 2718 153 21 56 chrX 16110016 16110532 -160863608 - MLT1D LTR MaLR -7 498 1 505 289 16 8 chrX 16110682 16110810 -160863330 - MIR SINE MIR -112 150 22 2663 140 34 5 chrX 16111244 16111629 -160862511 - MSTD LTR MaLR 0 396 1 656 197 47 8 chrX 16111686 16111813 -160862327 - MER5B DNA MER1_type -4 174 43 2452 102 0 0 chrX 16112084 16112397 -160861743 + AluSq SINE Alu 1 313 0 229 227 0 0 chrX 16112635 16112679 -160861461 - MARNA DNA Mariner -131 455 412 * 232 255 75 43 chrX 16112655 16112749 -160861391 + MARNA DNA Mariner 448 544 -42 2584 185 90 75 chrX 16112761 16113580 -160860560 + L1MC5 LINE L1 6852 7689 -272 1665 170 7 18 chrX 16113580 16113882 -160860258 + AluJb SINE Alu 11 309 0 2584 185 90 75 chrX 16113882 16113957 -160860183 + L1MC5 LINE L1 7689 7761 -200 1218 171 9 27 chrX 16113977 16114140 -160860000 + MER20 DNA MER1_type 1 160 -59 2533 207 82 15 chrX 16114140 16114667 -160859473 + REP3 LTR ERV 1 562 0 1218 171 9 27 chrX 16114667 16114725 -160859415 + MER20 DNA MER1_type 160 218 -1 247 187 9 131 chrX 16114725 16114832 -160859308 + L1MC5 LINE L1 7808 7901 -60 386 261 115 38 chrX 16114964 16115121 -160859019 + MIR SINE MIR 56 224 -38 2058 101 0 14 chrX 16115321 16115639 -160858501 + AluSx SINE Alu 1 314 0 1459 135 4 52 chrX 16115700 16115930 -160858210 + MER20 DNA MER1_type 1 219 0 2121 117 7 0 chrX 16116364 16116654 -160857486 + AluSx SINE Alu 1 292 -20 37 0 0 0 chrX 16116885 16116922 -160857218 + AT_rich Low_complexity Low_complexity 1 37 0 2398 97 0 0 chrX 16116970 16117279 -160856861 - AluSx SINE Alu -3 309 1 351 44 0 0 chrX 16118281 16118326 -160855814 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 86 0 0 chrX 16118808 16118843 -160855297 + U2 snRNA snRNA 2 36 -152 2325 110 0 0 chrX 16119123 16119424 -160854716 + AluSx SINE Alu 1 301 -11 260 245 0 0 chrX 16120183 16120236 -160853904 - L2 LINE L2 -2 3311 3259 1024 134 5 106 chrX 16120832 16120932 -160853208 + MER3 DNA MER1_type 15 83 -126 2179 88 60 0 chrX 16120932 16121215 -160852925 + AluSx SINE Alu 10 309 -3 1024 134 5 106 chrX 16121215 16121331 -160852809 + MER3 DNA MER1_type 83 209 0 311 207 184 23 chrX 16121357 16121444 -160852696 + MIR SINE MIR 48 148 -114 1853 182 0 3 chrX 16121451 16121759 -160852381 + AluJo SINE Alu 5 311 -1 489 76 0 0 chrX 16121761 16121827 -160852313 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 228 277 15 0 chrX 16122126 16122191 -160851949 - Tigger8 DNA MER2_type -591 75 10 2025 133 0 7 chrX 16122648 16122941 -160851199 - AluSx SINE Alu -21 291 1 291 85 0 0 chrX 16122993 16123040 -160851100 + (CAAT)n Simple_repeat Simple_repeat 2 48 0 1811 99 0 0 chrX 16123615 16123847 -160850293 + AluSq SINE Alu 61 292 -21 1721 234 60 6 chrX 16125385 16125934 -160848206 + MLT2E LTR ERVL 1 626 -2 2141 118 7 0 chrX 16126196 16126492 -160847648 - AluSx SINE Alu -14 298 1 2424 93 3 0 chrX 16126514 16126825 -160847315 - AluSp SINE Alu -1 312 1 1342 139 18 0 chrX 16127594 16127817 -160846323 + L1MA5 LINE L1 6072 6298 -2 1648 152 5 3 chrX 16127830 16128216 -160845924 + L1MA4A LINE L1 5833 6280 -23 21 0 0 0 chrX 16128216 16128237 -160845903 + AT_rich Low_complexity Low_complexity 1 21 0 244 238 62 100 chrX 16128344 16128424 -160845716 - MER91A DNA MER1_type -3 193 117 697 276 133 36 chrX 16128706 16129007 -160845133 + MER115 DNA AcHobo 36 365 -328 819 192 132 27 chrX 16129033 16129132 -160845008 + MER115 DNA AcHobo 450 537 -156 456 19 0 0 chrX 16129132 16129185 -160844955 + (TG)n Simple_repeat Simple_repeat 2 54 0 819 192 132 27 chrX 16129185 16129304 -160844836 + MER115 DNA AcHobo 537 691 -2 2384 110 0 0 chrX 16129543 16129853 -160844287 + AluSx SINE Alu 1 310 -2 2358 117 42 28 chrX 16130359 16130718 -160843422 - THE1B LTR MaLR 0 364 1 778 222 98 10 chrX 16130798 16130992 -160843148 + L2 LINE L2 3103 3313 0 936 168 58 0 chrX 16131828 16131983 -160842157 + MLT1A1 LTR MaLR 202 365 0 2582 198 62 63 chrX 16131985 16132335 -160841805 + L1MB2 LINE L1 4563 4912 -1234 2887 148 17 23 chrX 16132335 16132692 -160841448 + L1MB2 LINE L1 5698 6053 -118 2310 55 3 3 chrX 16132692 16132983 -160841157 + AluY SINE Alu 1 291 -20 2887 148 17 23 chrX 16132983 16133099 -160841041 + L1MB2 LINE L1 6053 6168 -3 2582 198 62 63 chrX 16133099 16133553 -160840587 + L1MB2 LINE L1 4912 5366 -780 2055 128 3 3 chrX 16133824 16134121 -160840019 - AluSq SINE Alu -16 297 1 24 0 0 0 chrX 16134330 16134354 -160839786 + AT_rich Low_complexity Low_complexity 1 24 0 1743 227 26 40 chrX 16134432 16134806 -160839334 + L1MCb LINE L1 3 371 -5674 2482 138 5 22 chrX 16134806 16135175 -160838965 - THE1B LTR MaLR -1 363 1 1743 227 26 40 chrX 16135175 16135253 -160838887 + L1MCb LINE L1 371 449 -5596 2243 114 0 3 chrX 16135265 16135563 -160838577 + AluSq SINE Alu 1 297 -16 336 200 143 0 chrX 16135635 16135705 -160838435 + L1MCb LINE L1 486 565 -5480 1848 178 22 38 chrX 16135782 16136227 -160837913 + L1MCb LINE L1 1367 1804 -4760 2093 161 159 13 chrX 16136827 16137362 -160836778 + L1MCb LINE L1 1879 2491 -4073 2154 123 13 0 chrX 16137363 16137671 -160836469 + AluSq SINE Alu 1 312 -1 1674 189 0 34 chrX 16137736 16138061 -160836079 + AluJo SINE Alu 2 316 0 1355 206 45 14 chrX 16138263 16138550 -160835590 + AluJo SINE Alu 1 296 -16 2130 114 24 0 chrX 16138650 16138939 -160835201 - AluSx SINE Alu -16 296 1 475 183 43 0 chrX 16139551 16139644 -160834496 + L2 LINE L2 3215 3311 -2 2407 86 0 10 chrX 16139704 16140007 -160834133 + AluSx SINE Alu 1 300 -12 906 231 53 64 chrX 16140144 16140426 -160833714 - MLT1J LTR MaLR -9 502 224 2517 91 36 8 chrX 16140463 16140793 -160833347 - L1PA15 LINE L1 0 6165 5823 2241 108 0 13 chrX 16140793 16141100 -160833040 - AluSx SINE Alu -7 305 3 2517 91 36 8 chrX 16141100 16141130 -160833010 - L1PA15 LINE L1 -342 5823 5795 236 139 163 0 chrX 16141130 16141173 -160832967 + L1P4 LINE L1 5563 5612 -562 428 288 127 24 chrX 16141394 16141734 -160832406 - L1ME4a LINE L1 -273 5848 5474 750 156 71 21 chrX 16141903 16142044 -160832096 + MER69B DNA AcHobo 1 148 -1078 3224 88 9 93 chrX 16142180 16142518 -160831622 - L1PB1 LINE L1 -39 6112 5836 351 0 0 0 chrX 16142518 16142557 -160831583 + (TG)n Simple_repeat Simple_repeat 1 39 0 3224 88 9 93 chrX 16142557 16142764 -160831376 - L1PB1 LINE L1 -315 5836 5613 266 185 111 0 chrX 16142764 16142818 -160831322 + MER69B DNA AcHobo 124 183 -1043 620 179 154 43 chrX 16142820 16142982 -160831158 + MER63A DNA MER1_type 3 182 -28 * 1901 229 63 91 chrX 16142981 16143176 -160830964 + MER69B DNA AcHobo 182 381 -2145 2244 105 0 0 chrX 16143176 16143470 -160830670 - AluSg SINE Alu -16 294 1 1901 229 63 91 chrX 16143470 16143596 -160830544 + MER69B DNA AcHobo 381 509 -2017 2340 92 0 0 chrX 16143596 16143889 -160830251 + AluSx SINE Alu 1 293 -19 1901 229 63 91 chrX 16143889 16143928 -160830212 + MER69B DNA AcHobo 509 548 -1978 2400 155 3 11 chrX 16143928 16144296 -160829844 - MLT1A1 LTR MaLR 0 365 1 1901 229 63 91 chrX 16144296 16144815 -160829325 + MER69B DNA AcHobo 548 1039 -187 851 252 21 13 chrX 16144876 16145110 -160829030 - L1MC4 LINE L1 -454 7588 7353 23 33 0 0 chrX 16145481 16145511 -160828629 + GC_rich Low_complexity Low_complexity 1 30 0 2091 119 13 3 chrX 16147151 16147454 -160826686 - AluSq SINE Alu -7 306 1 303 372 44 0 chrX 16147498 16147611 -160826529 - L2 LINE L2 0 3272 3155 267 188 87 0 chrX 16147791 16147860 -160826280 - MIR SINE MIR -71 191 117 917 283 111 34 chrX 16147862 16148275 -160825865 - LTR67 LTR ERVL 0 557 113 301 340 54 74 chrX 16148472 16148878 -160825262 + L2 LINE L2 2828 3225 -47 779 292 38 8 chrX 16149142 16149382 -160824758 - Tigger8 DNA MER2_type -5 661 415 288 328 52 9 chrX 16149503 16149619 -160824521 - Tigger8 DNA MER2_type -462 204 84 2356 101 0 0 chrX 16149619 16149915 -160824225 - AluSx SINE Alu -13 299 4 221 328 55 78 chrX 16150248 16150321 -160823819 + L2 LINE L2 3139 3209 -63 2328 97 3 0 chrX 16150321 16150629 -160823511 - AluSq SINE Alu -4 309 1 221 328 55 78 chrX 16150629 16150683 -160823457 + L2 LINE L2 3209 3263 -9 546 254 111 21 chrX 16151889 16152078 -160822062 - MIR SINE MIR -42 220 15 2270 112 0 0 chrX 16152189 16152485 -160821655 - AluSx SINE Alu -16 296 1 2342 103 0 0 chrX 16153111 16153412 -160820728 - AluSq SINE Alu -12 301 1 2193 97 24 0 chrX 16153441 16153730 -160820410 - AluSx SINE Alu -16 296 1 2219 93 3 27 chrX 16153743 16154044 -160820096 - AluSx SINE Alu -17 295 2 562 279 36 12 chrX 16155325 16155490 -160818650 + MIR SINE MIR 24 192 -70 610 246 66 22 chrX 16156745 16156790 -160817350 + MER58C DNA MER1_type 3 45 -2375 964 138 0 7 chrX 16156790 16156935 -160817205 - L1MB8 LINE L1 -9 6169 6026 610 246 66 22 chrX 16156935 16157072 -160817068 + MER58C DNA MER1_type 45 193 -22 2695 229 194 58 chrX 16157222 16158588 -160815552 - L1MC4a LINE L1 -134 7674 6123 368 322 8 8 chrX 16158854 16158972 -160815168 + MIR3 SINE MIR 42 159 -49 203 333 176 0 chrX 16158968 16159070 -160815070 + L2 LINE L2 3151 3270 -2 * 1976 82 26 30 chrX 16159388 16159657 -160814483 + AluSq SINE Alu 1 268 -45 6544 74 15 71 chrX 16160055 16161720 -160812420 - SVA Other Other -518 1386 393 2846 137 71 25 chrX 16161803 16162327 -160811813 - L1MB5 LINE L1 0 6174 5627 2425 72 3 0 chrX 16162341 16162634 -160811506 - AluSg SINE Alu -10 300 7 1823 174 0 3 chrX 16162649 16162960 -160811180 - AluJb SINE Alu -2 310 1 1900 244 147 49 chrX 16162961 16163280 -160810860 - L1MC4a LINE L1 -743 5403 5117 2359 88 7 0 chrX 16163280 16163574 -160810566 - AluSq SINE Alu -17 296 1 1900 244 147 49 chrX 16163574 16163757 -160810383 - L1MC4a LINE L1 -1029 5117 4953 2234 108 0 7 chrX 16163757 16164062 -160810078 - AluSg SINE Alu -7 303 1 1900 244 147 49 chrX 16164062 16164624 -160809516 - L1MC4a LINE L1 -1193 4953 4768 2443 76 0 25 chrX 16164624 16164939 -160809201 - AluSg SINE Alu -3 307 1 1900 244 147 49 chrX 16164939 16164987 -160809153 - L1MC4a LINE L1 -1378 4768 4726 2161 106 7 7 chrX 16165088 16165391 -160808749 - AluSc SINE Alu -6 303 1 2151 79 4 0 chrX 16165830 16166116 -160808024 - AluY SINE Alu 0 303 17 1975 113 10 23 chrX 16166970 16167270 -160806870 - AluSg SINE Alu -14 296 1 243 250 0 0 chrX 16169495 16169567 -160804573 + T-rich Low_complexity Low_complexity 1 72 0 714 255 170 75 chrX 16169835 16170602 -160803538 - L2 LINE L2 -5 3308 2449 278 350 184 0 chrX 16171397 16171614 -160802526 + L2 LINE L2 2397 2653 -661 440 279 98 83 chrX 16171854 16172119 -160802021 + L2 LINE L2 2995 3263 -9 1055 181 29 5 chrX 16172467 16172671 -160801469 - MER3 DNA MER1_type 0 209 1 183 262 0 24 chrX 16172879 16172921 -160801219 - L3 LINE CR1 -13 1564 1524 * 258 280 120 0 chrX 16172889 16172964 -160801176 - MIR3 SINE MIR -26 182 99 916 147 0 0 chrX 16174400 16174529 -160799611 - FLAM_C SINE Alu -4 129 1 2259 117 0 0 chrX 16175356 16175655 -160798485 - AluSg SINE Alu -11 299 1 714 268 64 56 chrX 16176766 16176868 -160797272 + MIR SINE MIR 11 111 -151 2411 85 0 10 chrX 16176868 16177174 -160796966 - AluSx SINE Alu -9 303 1 714 268 64 56 chrX 16177174 16177321 -160796819 + MIR SINE MIR 111 262 0 22 0 0 0 chrX 16177399 16177421 -160796719 + AT_rich Low_complexity Low_complexity 1 22 0 245 290 0 14 chrX 16179195 16179264 -160794876 - Charlie4 DNA MER1_type -11 1950 1883 1077 285 60 54 chrX 16179829 16180368 -160793772 - L1MC5 LINE L1 -35 7926 7381 925 190 112 34 chrX 16180368 16180573 -160793567 + MER58A DNA MER1_type 1 221 -3 1077 285 60 54 chrX 16180573 16180718 -160793422 - L1MC5 LINE L1 -580 7381 7238 1241 152 8 89 chrX 16180842 16181079 -160793061 - MER20 DNA MER1_type -1 218 1 479 255 60 46 chrX 16181096 16181312 -160792828 - L1MC5 LINE L1 -742 7219 7001 21 0 0 0 chrX 16181343 16181364 -160792776 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 27 0 chrX 16181479 16181772 -160792368 - AluSx SINE Alu -10 302 2 1899 204 60 79 chrX 16181871 16181906 -160792234 + L1MC5 LINE L1 6683 6717 -1244 2285 111 0 22 chrX 16181906 16182222 -160791918 - AluSx SINE Alu -3 309 1 1899 204 60 79 chrX 16182222 16182847 -160791293 + L1MC5 LINE L1 6717 7331 -630 827 244 109 79 chrX 16183060 16183573 -160790567 + L2 LINE L2 2502 3036 -277 2355 92 0 10 chrX 16183589 16183903 -160790237 - AluSx SINE Alu -1 311 1 238 352 89 22 chrX 16185935 16186114 -160788026 - L3 LINE CR1 -151 1426 1236 275 265 205 0 chrX 16186507 16186624 -160787516 + MIR SINE MIR 3 143 -119 334 100 20 0 chrX 16186962 16187012 -160787128 + L1MB2 LINE L1 6105 6155 -16 319 253 167 0 chrX 16189968 16190118 -160784022 - MIR SINE MIR -19 243 69 303 228 109 43 chrX 16190331 16190423 -160783717 - L2 LINE L2 -30 3242 3145 2260 165 70 40 chrX 16192443 16192988 -160781152 + L1MB5 LINE L1 5614 6174 0 2340 122 62 22 chrX 16193069 16193520 -160780620 + SVA Other Other 393 861 -525 444 252 49 24 chrX 16194388 16194511 -160779629 - MIR SINE MIR -70 192 67 1606 183 50 21 chrX 16195771 16196149 -160777991 - L1MB8 LINE L1 -1 6177 5789 289 70 116 0 chrX 16196626 16196669 -160777471 - L3 LINE CR1 -1 1576 1529 186 71 0 0 chrX 16198264 16198292 -160775848 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2252 112 0 0 chrX 16250399 16250695 -160723445 - AluSx SINE Alu -16 296 1 468 296 7 33 chrX 16251490 16251642 -160722498 - MER5B DNA MER1_type -29 149 2 201 304 63 13 chrX 16252821 16252900 -160721240 - L2 LINE L2 -63 3209 3127 1712 131 95 93 chrX 16253102 16253228 -160720912 - MLT1B LTR MaLR 0 390 266 2316 100 0 0 chrX 16253228 16253517 -160720623 - AluSg SINE Alu -21 289 1 1712 131 95 93 chrX 16253517 16253778 -160720362 - MLT1B LTR MaLR -124 266 2 255 134 0 75 chrX 16254126 16254193 -160719947 + (TTTTC)n Simple_repeat Simple_repeat 3 64 0 2471 70 0 0 chrX 16255029 16255327 -160718813 - AluY SINE Alu -13 298 1 23 0 0 0 chrX 16255444 16255467 -160718673 + AT_rich Low_complexity Low_complexity 1 23 0 311 227 140 27 chrX 16255819 16255969 -160718171 + L1ME4a LINE L1 5954 6120 -1 601 229 153 0 chrX 16256123 16256280 -160717860 + MER5A DNA MER1_type 9 189 0 2216 101 0 7 chrX 16256628 16256925 -160717215 + AluSx SINE Alu 1 295 -17 209 167 42 0 chrX 16259682 16259730 -160714410 + T-rich Low_complexity Low_complexity 4 53 0 205 135 54 0 chrX 16259848 16259885 -160714255 + (CTTTG)n Simple_repeat Simple_repeat 5 43 0 199 300 33 0 chrX 16260926 16260986 -160713154 - L2 LINE L2 -219 3053 2992 2028 110 0 21 chrX 16261199 16261490 -160712650 - AluJb SINE Alu -24 288 4 537 185 124 162 chrX 16263475 16263740 -160710400 + MIR SINE MIR 2 256 -6 296 350 0 0 chrX 16263842 16263922 -160710218 + L2 LINE L2 3186 3265 -7 387 221 10 29 chrX 16264103 16264207 -160709933 - MER5B DNA MER1_type -76 102 1 2063 152 0 9 chrX 16265752 16266067 -160708073 - AluJb SINE Alu 0 312 1 217 303 34 76 chrX 16266431 16266550 -160707590 + MIR SINE MIR 41 154 -108 908 299 34 6 chrX 16267669 16267993 -160706147 + MER102b DNA MER1_type 1 333 -8 2415 87 3 0 chrX 16268219 16268528 -160705612 - AluSg SINE Alu 0 310 1 244 356 25 19 chrX 16268535 16268695 -160705445 - MIR SINE MIR -42 220 60 1199 163 5 10 chrX 16268728 16268937 -160705203 + MER3 DNA MER1_type 2 209 0 251 276 11 23 chrX 16269456 16269543 -160704597 - HsTC2 DNA Tc2 -1812 86 1 279 194 0 28 chrX 16270569 16270641 -160703499 + MER116 DNA Mariner 1 70 -10 263 219 122 0 chrX 16271514 16271596 -160702544 - MIR SINE MIR -55 207 116 577 305 190 10 chrX 16271836 16272231 -160701909 - L2 LINE L2 -84 3229 2739 21 36 0 0 chrX 16272769 16272797 -160701343 + AT_rich Low_complexity Low_complexity 1 28 0 196 30 61 0 chrX 16273594 16273627 -160700513 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1737 141 9 53 chrX 16273652 16273971 -160700169 - AluJo SINE Alu -2 310 6 1410 191 38 48 chrX 16274504 16274797 -160699343 + AluJo SINE Alu 1 290 -22 290 123 18 0 chrX 16274806 16274863 -160699277 + (TA)n Simple_repeat Simple_repeat 1 58 0 481 247 13 20 chrX 16275030 16275180 -160698960 - MER103 DNA DNA -3 163 15 249 340 0 0 chrX 16275702 16275799 -160698341 - Charlie8 DNA MER1_type -2225 192 96 470 163 170 7 chrX 16275843 16275978 -160698162 + L1ME4a LINE L1 5501 5657 -513 23 33 0 0 chrX 16276089 16276119 -160698021 + AT_rich Low_complexity Low_complexity 1 30 0 372 246 91 96 chrX 16276256 16276443 -160697697 - L2 LINE L2 -557 2757 2572 371 138 15 0 chrX 16276447 16276512 -160697628 - MER20 DNA MER1_type -5 214 149 208 256 278 36 chrX 16276714 16276937 -160697203 + L2 LINE L2 1695 1971 -1343 331 320 94 17 chrX 16277022 16277256 -160696884 + L1ME4a LINE L1 5764 6015 -106 597 286 88 68 chrX 16277326 16277680 -160696460 + L2 LINE L2 2149 2517 -797 2264 105 0 0 chrX 16277680 16277975 -160696165 + AluSg SINE Alu 1 295 -15 597 286 88 68 chrX 16277975 16278106 -160696034 + L2 LINE L2 2517 2644 -670 816 182 144 52 chrX 16278106 16278403 -160695737 + MER33 DNA MER1_type 1 324 0 308 247 213 33 chrX 16280194 16280344 -160693796 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chrX 16280560 16280581 -160693559 + AT_rich Low_complexity Low_complexity 1 21 0 273 328 112 15 chrX 16280581 16280715 -160693425 - MIR SINE MIR -55 207 61 494 256 134 55 chrX 16280967 16281205 -160692935 - MIR SINE MIR 0 262 6 246 311 33 25 chrX 16283272 16283394 -160690746 - MIR SINE MIR -21 241 119 208 176 94 82 chrX 16285017 16285102 -160689038 - L2 LINE L2 -561 2753 2668 1838 168 30 0 chrX 16285884 16286181 -160687959 + AluJb SINE Alu 1 306 -6 2593 52 0 13 chrX 16286914 16287222 -160686918 + AluY SINE Alu 1 304 -7 2390 88 0 3 chrX 16287423 16287720 -160686420 + AluSg SINE Alu 1 296 -14 3062 110 2 24 chrX 16288138 16288601 -160685539 - L1PA11 LINE L1 0 6174 5722 3255 136 19 3 chrX 16288601 16289188 -160684952 + L1P LINE L1 4789 5384 -762 351 232 69 108 chrX 16289253 16289585 -160684555 - Charlie7 DNA MER1_type -2207 405 87 504 0 0 0 chrX 16290428 16290484 -160683656 + (TTTTA)n Simple_repeat Simple_repeat 1 56 0 2223 88 0 7 chrX 16290484 16290767 -160683373 - AluSq SINE Alu -32 281 1 2135 105 6 37 chrX 16291570 16291893 -160682247 + AluSq SINE Alu 1 313 0 805 151 48 87 chrX 16292663 16292869 -160681271 + MER20 DNA MER1_type 1 198 -21 3637 55 7 2 chrX 16292870 16293326 -160680814 + L1PA8 LINE L1 5714 6171 -1 2356 102 0 0 chrX 16293511 16293806 -160680334 - AluSg SINE Alu -15 295 1 1771 146 45 27 chrX 16293864 16294240 -160679900 - Charlie1b DNA MER1_type -140 383 1 1640 223 53 18 chrX 16294252 16294705 -160679435 + Charlie4a DNA MER1_type 39 507 -1 432 275 88 6 chrX 16295171 16295342 -160678798 - HAL1 LINE L1 0 2507 2323 2068 209 45 45 chrX 16295532 16296136 -160678004 - HAL1 LINE L1 -636 1871 1268 373 230 60 0 chrX 16296217 16296317 -160677823 - HAL1 LINE L1 -1798 709 604 443 271 59 21 chrX 16296437 16296671 -160677469 - HAL1 LINE L1 -2186 321 1 1079 258 16 12 chrX 16297007 16297259 -160676881 - MIR SINE MIR 0 262 10 27 29 0 0 chrX 16301428 16301462 -160672678 + AT_rich Low_complexity Low_complexity 1 34 0 593 228 19 38 chrX 16301600 16301758 -160672382 + L2 LINE L2 3159 3313 0 251 303 11 97 chrX 16301786 16301961 -160672179 + L2 LINE L2 3154 3313 0 2739 26 0 3 chrX 16303151 16303456 -160670684 - AluY SINE Alu -7 304 1 975 197 103 5 chrX 16303676 16303879 -160670261 - MER58A DNA MER1_type 0 224 2 1232 138 153 0 chrX 16304104 16304307 -160669833 + MER46A DNA MER2_type 1 234 -2 2478 81 0 0 chrX 16304386 16304682 -160669458 + AluSp SINE Alu 1 296 -17 414 102 85 0 chrX 16304889 16304948 -160669192 + FRAM SINE Alu 74 137 -39 1133 184 202 4 chrX 16304993 16305221 -160668919 + AluJo SINE Alu 10 282 -30 234 128 0 0 chrX 16305226 16305265 -160668875 + (TA)n Simple_repeat Simple_repeat 2 40 0 1327 272 102 19 chrX 16305416 16305928 -160668212 + MLT1F1 LTR MaLR 3 565 -2 194 277 0 0 chrX 16305981 16306028 -160668112 + L2 LINE L2 3261 3307 -6 2141 119 7 0 chrX 16307182 16307475 -160666665 + AluSx SINE Alu 1 295 -17 1055 139 36 18 chrX 16307918 16308084 -160666056 - AluJb SINE Alu -11 301 133 25 31 0 0 chrX 16308671 16308703 -160665437 + AT_rich Low_complexity Low_complexity 1 32 0 394 179 83 109 chrX 16313099 16313255 -160660885 + MIR SINE MIR 2 153 -55 1244 114 0 0 chrX 16313406 16313582 -160660558 + AluSp SINE Alu 137 312 -1 689 168 8 8 chrX 16315555 16315674 -160658466 + FLAM_A SINE Alu 1 119 -14 307 337 0 22 chrX 16315689 16315781 -160658359 + L1MC4 LINE L1 6614 6703 -1339 * 369 323 10 0 chrX 16315701 16315800 -160658340 - L1MC4 LINE L1 -1339 6703 6604 227 268 0 0 chrX 16316522 16316578 -160657562 + L2 LINE L2 3172 3227 -86 636 222 83 32 chrX 16316959 16317175 -160656965 - Charlie8 DNA MER1_type -2152 265 39 281 159 16 0 chrX 16317807 16317870 -160656270 + CT-rich Low_complexity Low_complexity 1 64 0 345 24 0 0 chrX 16320408 16320450 -160653690 + (CA)n Simple_repeat Simple_repeat 2 43 0 29 78 0 0 chrX 16321116 16321180 -160652960 + GC_rich Low_complexity Low_complexity 1 64 0 240 105 0 0 chrX 16321616 16321647 -160652493 + (TC)n Simple_repeat Simple_repeat 1 34 -4 229 51 51 0 chrX 16321647 16321686 -160652454 + (CA)n Simple_repeat Simple_repeat 1 41 0 240 105 0 0 chrX 16321686 16321692 -160652448 + (TC)n Simple_repeat Simple_repeat 33 38 0 21 0 0 0 chrX 16322483 16322504 -160651636 + AT_rich Low_complexity Low_complexity 1 21 0 242 54 0 27 chrX 16322758 16322795 -160651345 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chrX 16323129 16323151 -160650989 + GC_rich Low_complexity Low_complexity 1 22 0 252 313 25 0 chrX 16323777 16323857 -160650283 + GA-rich Low_complexity Low_complexity 5 86 0 25 51 0 0 chrX 16323965 16324004 -160650136 + GC_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 16325568 16325588 -160648552 + (CAGA)n Simple_repeat Simple_repeat 2 21 0 222 37 0 0 chrX 16325735 16325762 -160648378 + (CGG)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chrX 16325961 16325996 -160648144 + GC_rich Low_complexity Low_complexity 1 35 0 545 249 59 21 chrX 16326227 16326395 -160647745 + MIR SINE MIR 37 208 -54 222 263 132 13 chrX 16326551 16326627 -160647513 - L2 LINE L2 0 3272 3188 231 36 0 0 chrX 16329129 16329157 -160644983 + (CA)n Simple_repeat Simple_repeat 2 29 0 254 308 0 22 chrX 16329266 16329357 -160644783 + CT-rich Low_complexity Low_complexity 4 92 0 299 253 0 0 chrX 16331727 16331822 -160642318 + CT-rich Low_complexity Low_complexity 2 96 0 36 70 0 0 chrX 16332026 16332097 -160642043 + GC_rich Low_complexity Low_complexity 1 71 0 366 115 0 0 chrX 16332133 16332194 -160641946 + (CCG)n Simple_repeat Simple_repeat 3 63 0 260 228 34 13 chrX 16332453 16332702 -160641438 + CT-rich Low_complexity Low_complexity 1 254 0 218 293 37 12 chrX 16332714 16332796 -160641344 + CT-rich Low_complexity Low_complexity 2 85 0 22 56 0 0 chrX 16333381 16333417 -160640723 + AT_rich Low_complexity Low_complexity 1 36 0 180 77 0 0 chrX 16335985 16336011 -160638129 + (TC)n Simple_repeat Simple_repeat 2 27 0 216 0 0 0 chrX 16337136 16337160 -160636980 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 16338062 16338095 -160636045 + AT_rich Low_complexity Low_complexity 1 33 0 291 114 0 0 chrX 16340924 16340968 -160633172 + (A)n Simple_repeat Simple_repeat 1 44 0 542 118 11 0 chrX 16342575 16342668 -160631472 + (TTCC)n Simple_repeat Simple_repeat 4 97 0 2245 112 0 7 chrX 16343666 16343961 -160630179 + AluSx SINE Alu 1 293 -19 593 218 68 77 chrX 16343989 16344105 -160630035 - MIR SINE MIR -34 228 113 534 200 18 18 chrX 16344105 16344215 -160629925 - MER81 DNA DNA -1 113 4 593 218 68 77 chrX 16344215 16344318 -160629822 - MIR SINE MIR -149 113 11 301 279 36 57 chrX 16344331 16344471 -160629669 - MIR3 SINE MIR -67 141 5 715 265 81 11 chrX 16345486 16345758 -160628382 - L1ME LINE L1 -347 5774 5484 2225 65 79 10 chrX 16345936 16346227 -160627913 + AluSq SINE Alu 1 311 -2 325 304 80 0 chrX 16346315 16346440 -160627700 + MIR SINE MIR 28 162 -100 2365 100 0 0 chrX 16346527 16346828 -160627312 - AluSx SINE Alu -11 301 1 281 309 81 20 chrX 16346831 16347053 -160627087 - L1ME LINE L1 -429 5692 5485 207 0 0 0 chrX 16347053 16347076 -160627064 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1866 146 4 4 chrX 16347078 16347358 -160626782 - AluJb SINE Alu -31 281 2 281 309 81 20 chrX 16347358 16347477 -160626663 - L1ME LINE L1 -636 5485 5321 372 210 47 37 chrX 16347648 16347770 -160626370 + MLT1J LTR MaLR 55 221 -290 2132 88 4 0 chrX 16349211 16349483 -160624657 - AluSg1 SINE Alu -2 307 35 189 0 0 0 chrX 16349962 16349983 -160624157 + (T)n Simple_repeat Simple_repeat 1 21 0 2292 102 0 0 chrX 16350073 16350393 -160623747 - AluSx SINE Alu 0 320 1 21 0 0 0 chrX 16350393 16350414 -160623726 + AT_rich Low_complexity Low_complexity 1 21 0 2480 90 0 0 chrX 16350914 16351225 -160622915 - AluY SINE Alu 0 311 1 25 51 0 0 chrX 16351261 16351300 -160622840 + AT_rich Low_complexity Low_complexity 1 39 0 231 147 0 0 chrX 16351307 16351341 -160622799 + Alu SINE Alu 257 290 -12 2327 112 3 0 chrX 16351544 16351856 -160622284 - AluSp SINE Alu 0 313 1 225 0 0 0 chrX 16352683 16352708 -160621432 + (A)n Simple_repeat Simple_repeat 1 25 0 2154 104 0 0 chrX 16352711 16352990 -160621150 + AluSg SINE Alu 1 279 -31 189 0 0 0 chrX 16353027 16353048 -160621092 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 518 268 83 13 chrX 16353455 16353612 -160620528 + MLT1H1 LTR MaLR 26 193 -362 513 176 78 161 chrX 16353698 16353891 -160620249 + MLT1H1 LTR MaLR 379 555 0 1193 269 77 29 chrX 16353891 16354334 -160619806 + MLT1J LTR MaLR 38 501 -10 371 320 83 33 chrX 16354444 16354925 -160619215 - L2 LINE L2 -65 3207 2712 940 290 98 22 chrX 16355112 16355478 -160618662 - MLT1J LTR MaLR -47 464 71 279 184 41 0 chrX 16355536 16355585 -160618555 + MER58 DNA MER1_type 195 245 -96 2304 72 9 56 chrX 16358645 16358966 -160615174 - AluSg SINE Alu -4 306 1 2426 117 104 0 chrX 16359259 16359645 -160614495 - MSTB LTR MaLR 0 426 1 1216 277 106 10 chrX 16359921 16360318 -160613822 + MLT1J2 LTR MaLR 1 435 -15 2381 69 0 3 chrX 16360326 16360640 -160613500 - AluSq SINE Alu 0 313 1 2381 93 3 0 chrX 16360710 16361010 -160613130 - AluSp SINE Alu -12 301 1 2395 94 3 0 chrX 16361279 16361578 -160612562 + AluSx SINE Alu 1 300 -12 761 124 283 0 chrX 16361930 16362075 -160612065 - MER5A DNA MER1_type 0 189 4 468 327 193 19 chrX 16362338 16362533 -160611607 - L2 LINE L2 -353 2961 2801 2341 92 3 0 chrX 16362533 16362827 -160611313 - AluSg SINE Alu -15 295 1 468 327 193 19 chrX 16362827 16363227 -160610913 - L2 LINE L2 -513 2801 2262 333 299 89 71 chrX 16363385 16363645 -160610495 - MER102a DNA MER1_type -1087 330 61 2402 96 0 0 chrX 16363645 16363947 -160610193 + AluSx SINE Alu 1 302 -10 333 299 89 71 chrX 16363947 16364010 -160610130 - MER102a DNA MER1_type -1356 61 1 2052 135 0 10 chrX 16364080 16364384 -160609756 + AluJb SINE Alu 1 301 -11 202 211 105 0 chrX 16364410 16364467 -160609673 - L2 LINE L2 -1245 2069 2007 2286 110 0 16 chrX 16364679 16364987 -160609153 + AluSx SINE Alu 5 307 -5 297 23 23 0 chrX 16365282 16365325 -160608815 - L1MA5 LINE L1 0 6300 6257 616 208 0 39 chrX 16365698 16365828 -160608312 + MER94 DNA DNA 7 131 -3 775 199 0 0 chrX 16369939 16370085 -160604055 - L1ME3A LINE L1 -5 6165 6020 312 210 0 0 chrX 16370137 16370199 -160603941 - L1M4 LINE L1 -1577 4569 4508 1909 142 48 3 chrX 16370213 16370502 -160603638 - AluJo SINE Alu -10 302 1 191 36 36 0 chrX 16371071 16371099 -160603041 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1649 163 39 18 chrX 16372751 16372916 -160601224 - AluJo SINE Alu -19 293 118 216 0 0 0 chrX 16372916 16372940 -160601200 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1649 163 39 18 chrX 16372940 16373057 -160601083 - AluJo SINE Alu -194 118 5 1127 199 13 22 chrX 16373249 16373475 -160600665 - MER58A DNA MER1_type 0 224 1 2479 72 3 0 chrX 16373685 16373978 -160600162 + AluSp SINE Alu 1 294 -19 2312 110 49 9 chrX 16374124 16374470 -160599670 - THE1B LTR MaLR 0 364 5 342 253 13 0 chrX 16374683 16374762 -160599378 + MER116 DNA Mariner 1 80 0 982 227 61 153 chrX 16374764 16374968 -160599172 - L1MC5 LINE L1 -142 7900 7679 2191 118 3 0 chrX 16374968 16375256 -160598884 - AluSx SINE Alu -23 289 1 982 227 61 153 chrX 16375256 16375723 -160598417 - L1MC5 LINE L1 -363 7679 7258 2395 112 0 6 chrX 16375804 16376118 -160598022 - AluSx SINE Alu 0 312 1 253 331 61 12 chrX 16376355 16376518 -160597622 - L1M2 LINE L1 -741 5550 5380 21 36 0 0 chrX 16376601 16376629 -160597511 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chrX 16376713 16376758 -160597382 + AT_rich Low_complexity Low_complexity 1 45 0 2537 87 0 0 chrX 16376758 16377070 -160597070 - AluSx SINE Alu 0 312 1 253 173 13 27 chrX 16377590 16377665 -160596475 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 814 263 0 32 chrX 16378449 16378696 -160595444 + MIR SINE MIR 20 258 -4 203 274 0 0 chrX 16379089 16379128 -160595012 + CT-rich Low_complexity Low_complexity 5 46 -9 2141 143 26 0 chrX 16379128 16379436 -160594704 - 7SLRNA srpRNA srpRNA -4 316 1 203 274 0 0 chrX 16379436 16379447 -160594693 + CT-rich Low_complexity Low_complexity 45 55 0 508 229 181 19 chrX 16379447 16379657 -160594483 - L1MC5 LINE L1 -36 7925 7682 * 1593 168 32 6 chrX 16379654 16379995 -160594145 - L1MB3 LINE L1 -19 6164 5811 255 215 123 0 chrX 16380326 16380391 -160593749 - L3 LINE CR1 -1 1576 1504 2168 106 0 3 chrX 16380688 16380970 -160593170 - AluSx SINE Alu -31 281 1 685 81 0 30 chrX 16380970 16381069 -160593071 - L1MB4 LINE L1 -309 5871 5776 * 3397 171 59 108 chrX 16381042 16381124 -160593016 - L1MC5 LINE L1 -226 7735 7651 2034 136 48 0 chrX 16381124 16381419 -160592721 - AluSx SINE Alu -3 309 1 3397 171 59 108 chrX 16381419 16381477 -160592663 - L1MC5 LINE L1 -310 7651 7592 2508 82 0 0 chrX 16381477 16381782 -160592358 + AluSx SINE Alu 1 305 -7 3397 171 59 108 chrX 16381782 16381856 -160592284 - L1MC5 LINE L1 -369 7592 7516 4275 96 30 3 chrX 16381856 16382462 -160591678 + L1PA16 LINE L1 5545 6166 0 3397 171 59 108 chrX 16382462 16383373 -160590767 - L1MC5 LINE L1 -445 7516 6663 281 219 0 0 chrX 16383395 16383459 -160590681 - L1ME4a LINE L1 0 6121 6058 829 213 116 104 chrX 16384038 16384451 -160589689 - Charlie2 DNA MER1_type -2 2860 2443 1130 87 11 38 chrX 16584582 16584765 -160389375 - AluSg/x SINE Alu -15 297 120 595 207 9 0 chrX 16584770 16584886 -160389254 - Charlie2a DNA MER1_type -1222 1640 1524 1735 135 6 48 chrX 16584901 16585212 -160388928 + AluJb SINE Alu 1 298 -14 273 119 0 0 chrX 16585243 16585285 -160388855 + (T)n Simple_repeat Simple_repeat 1 42 0 529 200 17 17 chrX 16585657 16585772 -160388368 - Charlie2 DNA MER1_type -2553 309 195 670 153 0 9 chrX 16585776 16585887 -160388253 - FLAM_C SINE Alu -14 129 20 2077 116 0 3 chrX 16585888 16586190 -160387950 + AluSx SINE Alu 1 301 -11 934 129 0 0 chrX 16586291 16586423 -160387717 - FLAM_C SINE Alu -1 132 1 416 294 96 0 chrX 16586435 16586581 -160387559 - Charlie2 DNA MER1_type -2698 164 5 2279 71 3 19 chrX 16586784 16587095 -160387045 + AluSp SINE Alu 1 306 -7 1840 141 30 20 chrX 16587935 16588234 -160385906 + AluJb SINE Alu 1 302 -10 2168 77 3 3 chrX 16588756 16589042 -160385098 + AluSp SINE Alu 1 286 -27 1157 142 19 15 chrX 16589065 16589270 -160384870 - LTR49 LTR ERV1 0 595 390 1250 90 0 11 chrX 16589270 16589448 -160384692 + AluSc SINE Alu 133 308 -1 1799 145 112 22 chrX 16589449 16589814 -160384326 - LTR49 LTR ERV1 -197 398 1 1733 159 3 14 chrX 16590133 16590429 -160383711 + AluJb SINE Alu 2 294 -18 483 212 107 33 chrX 16590455 16590640 -160383500 - MER63 DNA MER1_type 0 1061 1 228 179 0 26 chrX 16590682 16590721 -160383419 + L2 LINE L2 3219 3256 -16 2288 98 0 7 chrX 16590763 16591069 -160383071 + AluSx SINE Alu 2 305 -7 2236 60 0 0 chrX 16591067 16591349 -160382791 + AluY SINE Alu 27 308 -3 * 213 232 18 0 chrX 16591472 16591528 -160382612 + (TTG)n Simple_repeat Simple_repeat 1 57 0 524 251 67 27 chrX 16591775 16591998 -160382142 + L1MC4 LINE L1 6837 7068 -974 815 143 0 0 chrX 16592004 16592123 -160382017 + AluJb SINE Alu 2 120 -192 558 211 72 33 chrX 16592156 16592308 -160381832 + L1MC5 LINE L1 6960 7117 -844 917 120 0 0 chrX 16592325 16592450 -160381690 - FLAM_C SINE Alu -16 127 3 876 199 71 26 chrX 16592452 16592678 -160381462 + L1MC5 LINE L1 7106 7341 -620 2361 75 0 7 chrX 16592794 16593100 -160381040 + AluSx SINE Alu 1 304 -8 2020 129 3 3 chrX 16593588 16593891 -160380249 - AluSx SINE Alu -9 303 1 2520 50 0 0 chrX 16593945 16594246 -160379894 + AluY SINE Alu 1 301 -10 323 244 77 13 chrX 16594248 16594326 -160379814 + MER5B DNA MER1_type 96 178 0 711 244 54 24 chrX 16594464 16594669 -160379471 + MIR SINE MIR 51 261 -1 795 120 0 0 chrX 16594677 16594794 -160379346 - AluSg/x SINE Alu 0 310 194 506 50 0 0 chrX 16594790 16594875 -160379265 + AluSp/q SINE Alu 225 309 0 * 2169 99 0 3 chrX 16595438 16595740 -160378400 - AluSg SINE Alu -7 303 3 1670 156 9 37 chrX 16595770 16596091 -160378049 + AluJo SINE Alu 1 312 0 28 0 0 0 chrX 16596092 16596120 -160378020 + AT_rich Low_complexity Low_complexity 1 28 0 1520 165 60 11 chrX 16597103 16597388 -160376752 + AluJo SINE Alu 1 299 -13 2304 61 0 35 chrX 16597393 16597706 -160376434 + AluY SINE Alu 1 302 -9 2330 55 7 32 chrX 16597999 16598309 -160375831 + AluY SINE Alu 1 302 -9 1917 153 0 0 chrX 16598355 16598650 -160375490 + AluSx SINE Alu 2 296 -16 207 0 0 0 chrX 16600506 16600529 -160373611 + (A)n Simple_repeat Simple_repeat 1 23 0 826 229 149 0 chrX 16602320 16602534 -160371606 + Charlie1 DNA MER1_type 1 246 -2515 440 260 82 111 chrX 16602618 16602790 -160371350 - L1MEc LINE L1 -4461 1754 1630 685 82 122 0 chrX 16602790 16602888 -160371252 - HY1 scRNA scRNA -2 110 1 440 260 82 111 chrX 16602888 16603059 -160371081 - L1MEc LINE L1 -4585 1630 1455 424 198 44 0 chrX 16603076 16603167 -160370973 + Charlie1 DNA MER1_type 159 253 -2508 988 89 0 15 chrX 16603197 16603332 -160370808 - FLAM_C SINE Alu 0 133 1 1757 104 0 12 chrX 16603797 16604056 -160370084 + AluSg SINE Alu 49 304 -6 1955 114 3 23 chrX 16604126 16604432 -160369708 + AluJo SINE Alu 1 300 -12 509 25 51 0 chrX 16604571 16604650 -160369490 + (TA)n Simple_repeat Simple_repeat 2 84 0 1785 112 78 0 chrX 16604650 16604919 -160369221 - AluSx SINE Alu -22 290 1 336 236 14 0 chrX 16604941 16605013 -160369127 - L1MCa LINE L1 -4359 2067 1995 * 426 230 47 0 chrX 16604967 16605065 -160369075 + L1MC4 LINE L1 6571 6646 -1139 207 139 0 0 chrX 16605068 16605104 -160369036 + (TA)n Simple_repeat Simple_repeat 1 36 0 2170 97 3 0 chrX 16605119 16605407 -160368733 - AluSp SINE Alu -24 289 1 1281 131 0 10 chrX 16605409 16605608 -160368532 - AluJo SINE Alu -11 301 105 186 43 0 0 chrX 16605612 16605635 -160368505 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 910 207 83 5 chrX 16605660 16605853 -160368287 - AluJb SINE Alu -89 223 16 252 245 40 146 chrX 16606193 16606246 -160367894 - MIR SINE MIR -38 224 167 2200 102 0 0 chrX 16606246 16606541 -160367599 - AluSx SINE Alu -17 295 1 1931 122 0 45 chrX 16606545 16606713 -160367427 - AluSx SINE Alu -14 298 149 2079 110 10 0 chrX 16606713 16607013 -160367127 - AluSp SINE Alu -10 303 1 1931 122 0 45 chrX 16607013 16607156 -160366984 - AluSx SINE Alu -163 149 1 1615 188 3 7 chrX 16607159 16607451 -160366689 - AluJo SINE Alu -21 291 1 252 245 40 146 chrX 16607451 16607539 -160366601 - MIR SINE MIR -100 162 90 2180 86 10 0 chrX 16607630 16607922 -160366218 - AluSx SINE Alu -17 295 1 1702 150 29 69 chrX 16607940 16608120 -160366020 - L1M3 LINE L1 -513 5658 5472 1428 162 3 81 chrX 16608120 16608453 -160365687 - AluJo SINE Alu -5 307 1 1702 150 29 69 chrX 16608453 16608611 -160365529 - L1M3 LINE L1 -699 5472 5334 1716 154 27 7 chrX 16608611 16608904 -160365236 - AluSx SINE Alu -13 299 1 1702 150 29 69 chrX 16608904 16608943 -160365197 - L1M3 LINE L1 -837 5334 5295 2150 107 3 0 chrX 16608948 16609248 -160364892 - AluSx SINE Alu -10 302 2 297 273 121 10 chrX 16609253 16609352 -160364788 - L2 LINE L2 -14 3258 3149 1270 166 0 0 chrX 16609641 16609840 -160364300 + AluJo SINE Alu 5 203 -109 1813 143 3 44 chrX 16609899 16610063 -160364077 - AluJo SINE Alu -4 308 162 2119 112 0 0 chrX 16610063 16610357 -160363783 + AluSc SINE Alu 1 294 -15 1813 143 3 44 chrX 16610357 16610513 -160363627 - AluJo SINE Alu -150 162 1 1907 137 23 13 chrX 16610821 16611127 -160363013 + AluSx SINE Alu 1 309 -3 354 320 46 26 chrX 16611185 16611338 -160362802 - L2 LINE L2 0 3313 3158 2023 121 6 10 chrX 16612053 16612366 -160361774 + AluSx SINE Alu 1 312 0 266 296 80 0 chrX 16612370 16612458 -160361682 - L2 LINE L2 -20 3252 3158 233 65 0 0 chrX 16612475 16612506 -160361634 - MIR SINE MIR -120 142 112 2067 79 4 4 chrX 16612584 16612861 -160361279 - AluSq SINE Alu -36 277 1 231 196 0 18 chrX 16612864 16612920 -160361220 - L1 LINE L1 -978 5168 5114 988 180 51 0 chrX 16612920 16613098 -160361042 - MLT1E LTR MaLR -406 187 1 432 0 0 0 chrX 16613099 16613147 -160360993 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1715 128 0 58 chrX 16613225 16613421 -160360719 - AluSx SINE Alu -17 295 122 2280 85 0 3 chrX 16613421 16613726 -160360414 - AluSq SINE Alu -9 304 1 1715 128 0 58 chrX 16613726 16613841 -160360299 - AluSx SINE Alu -190 122 2 303 291 107 10 chrX 16613842 16613945 -160360195 - L2 LINE L2 -11 3261 3149 1724 126 53 0 chrX 16614235 16614520 -160359620 + AluSx SINE Alu 5 304 -8 1000 119 0 65 chrX 16614525 16614713 -160359427 + AluSg/x SINE Alu 128 304 0 1793 117 4 4 chrX 16615265 16615530 -160358610 - AluSx SINE Alu -47 265 1 2117 70 7 11 chrX 16615632 16615950 -160358190 + AluSg SINE Alu 1 317 0 1702 59 0 18 chrX 16615950 16616172 -160357968 + AluSc SINE Alu 72 289 -20 7867 163 122 37 chrX 16616472 16618090 -160356050 + MER52A LTR ERV1 1 1755 0 455 78 16 0 chrX 16618481 16618545 -160355595 + MER41A LTR ERV1 400 464 -90 2149 128 0 0 chrX 16618545 16618857 -160355283 + AluSx SINE Alu 1 312 0 582 254 98 29 chrX 16619103 16619308 -160354832 + MIR SINE MIR 38 256 -6 1019 128 0 0 chrX 16619840 16619989 -160354151 - AluSg/x SINE Alu -6 306 158 833 92 0 0 chrX 16619989 16620098 -160354042 - AluSc SINE Alu -198 111 3 350 267 95 0 chrX 16620147 16620263 -160353877 - L2 LINE L2 0 3313 3187 2248 108 0 3 chrX 16620382 16620688 -160353452 + AluSx SINE Alu 1 305 -7 2205 98 0 3 chrX 16620688 16620984 -160353156 + AluSg SINE Alu 1 295 -15 1651 144 31 24 chrX 16620987 16621278 -160352862 + AluJb SINE Alu 1 293 -19 1157 269 43 34 chrX 16621691 16621716 -160352424 - L1ME LINE L1 -402 5760 5737 936 116 12 6 chrX 16621716 16621880 -160352260 + (TTTC)n Simple_repeat Simple_repeat 3 167 0 2049 101 0 3 chrX 16621880 16622161 -160351979 - AluSx SINE Alu -32 280 1 1157 269 43 34 chrX 16622161 16622555 -160351585 - L1ME LINE L1 -425 5737 5348 2047 106 7 7 chrX 16622555 16622856 -160351284 - AluSx SINE Alu -11 301 1 1157 269 43 34 chrX 16622856 16623055 -160351085 - L1ME LINE L1 -814 5348 5135 1793 147 7 3 chrX 16623055 16623347 -160350793 + AluJo SINE Alu 1 293 -19 307 254 58 87 chrX 16623360 16623498 -160350642 - L1ME LINE L1 -3663 2483 2350 2159 96 13 0 chrX 16623515 16623817 -160350323 - AluSq SINE Alu -7 306 1 23 0 0 0 chrX 16623819 16623842 -160350298 + AT_rich Low_complexity Low_complexity 1 23 0 1028 114 13 0 chrX 16623846 16624021 -160350119 - AluJb SINE Alu 0 308 132 2028 96 0 4 chrX 16624029 16624344 -160349796 - AluSg SINE Alu 0 314 1 445 37 0 0 chrX 16625266 16625320 -160348820 + MADE1 DNA Mariner 27 80 0 486 227 106 28 chrX 16625345 16625486 -160348654 + MIR SINE MIR 71 222 -40 2077 123 3 0 chrX 16625523 16625815 -160348325 - AluSx SINE Alu -19 293 1 2017 101 0 17 chrX 16625913 16626235 -160347905 + AluSq SINE Alu 3 319 0 546 186 59 0 chrX 16626706 16626824 -160347316 - MER96B DNA MER1_type? 0 417 293 315 208 0 0 chrX 16626818 16626871 -160347269 - MER96B DNA MER1_type? -364 53 1 * 230 287 168 86 chrX 16627250 16627383 -160346757 + L3 LINE CR1 1150 1271 -306 2101 89 0 4 chrX 16627383 16627689 -160346451 + AluY SINE Alu 1 305 0 230 287 168 86 chrX 16627689 16627821 -160346319 + L3 LINE CR1 1271 1439 -138 1917 139 13 3 chrX 16627878 16628180 -160345960 - AluJb SINE Alu -7 305 1 240 284 159 0 chrX 16628584 16628672 -160345468 + MIR SINE MIR 40 141 -67 1637 140 32 0 chrX 16628694 16628944 -160345196 - AluJb SINE Alu -54 258 1 1949 128 0 33 chrX 16629197 16629503 -160344637 - AluSx SINE Alu -13 299 4 2205 102 3 0 chrX 16629578 16629882 -160344258 - AluSp SINE Alu -8 305 1 1152 306 30 66 chrX 16630115 16630313 -160343827 + HERVL LTR ERVL 4153 4357 -1297 1887 124 7 0 chrX 16630313 16630608 -160343532 - AluSx SINE Alu 0 302 6 1152 306 30 66 chrX 16630608 16630951 -160343189 + HERVL LTR ERVL 4357 4675 -979 1312 162 97 0 chrX 16630965 16631193 -160342947 - MLT1E1 LTR MaLR 0 654 405 2195 107 0 0 chrX 16631221 16631529 -160342611 - AluSx SINE Alu -4 308 1 1070 277 56 56 chrX 16632150 16632576 -160341564 + LTR16B LTR ERVL 2 427 -37 2014 138 0 0 chrX 16632700 16633005 -160341135 - AluSx SINE Alu -7 305 1 2157 130 0 3 chrX 16633051 16633358 -160340782 - AluSq SINE Alu -7 306 1 875 83 33 8 chrX 16633402 16633522 -160340618 - AluSg/x SINE Alu -12 298 176 1412 109 0 0 chrX 16633586 16633779 -160340361 + AluSq SINE Alu 121 313 0 2235 109 3 3 chrX 16633850 16634154 -160339986 - AluSx SINE Alu -8 304 1 233 277 18 62 chrX 16634272 16634384 -160339756 + MLT1K LTR MaLR 164 270 -318 704 130 35 0 chrX 16634601 16634716 -160339424 - MER1B DNA MER1_type -120 177 59 1862 151 17 0 chrX 16634775 16635066 -160339074 - AluSq SINE Alu -17 296 1 1368 288 66 14 chrX 16635270 16635756 -160338384 + MLT1J LTR MaLR 1 511 0 2332 93 7 0 chrX 16636014 16636314 -160337826 + AluSx SINE Alu 5 306 -6 780 230 139 64 chrX 16636337 16636695 -160337445 - MLT1G3 LTR MaLR -33 497 97 2404 106 0 0 chrX 16636695 16636996 -160337144 - AluSx SINE Alu -11 301 1 780 230 139 64 chrX 16636996 16637101 -160337039 - MLT1G3 LTR MaLR -433 97 1 348 295 36 18 chrX 16638021 16638133 -160336007 - L2 LINE L2 0 3313 3200 2232 100 0 0 chrX 16638159 16638464 -160335676 - AluSx SINE Alu 0 305 1 559 165 18 0 chrX 16638655 16638764 -160335376 - MER20 DNA MER1_type -51 168 58 2241 110 0 10 chrX 16639209 16639510 -160334630 - AluSx SINE Alu -14 298 1 1237 146 27 5 chrX 16639921 16640140 -160334000 - L1MB2 LINE L1 -266 5905 5682 2419 85 0 0 chrX 16640162 16640457 -160333683 + AluSc SINE Alu 1 295 -14 532 77 121 0 chrX 16640461 16640552 -160333588 - L1MB8 LINE L1 -11 6167 6066 357 208 94 10 chrX 16640595 16640691 -160333449 + MLT2C1 LTR ERVL 14 117 -280 311 124 0 50 chrX 16640677 16640693 -160333447 + AluSc SINE Alu 118 133 -166 * 2330 88 3 10 chrX 16640693 16641001 -160333139 + AluSx SINE Alu 1 306 -6 311 124 0 50 chrX 16641001 16641051 -160333089 + AluSc SINE Alu 133 170 -129 239 227 155 41 chrX 16641071 16641168 -160332972 + MLT1E3 LTR MaLR 127 234 -390 * 815 219 12 62 chrX 16641095 16641351 -160332789 + MLT2C1 LTR ERVL 153 395 -2 1385 191 102 57 chrX 16641357 16641534 -160332606 - L1MC3 LINE L1 -743 5403 5235 1819 166 25 0 chrX 16641534 16641817 -160332323 - AluJo SINE Alu -22 290 1 1385 191 102 57 chrX 16641817 16642226 -160331914 - L1MC3 LINE L1 -911 5235 4846 2047 133 14 3 chrX 16642226 16642520 -160331620 + AluSx SINE Alu 1 297 -15 1385 191 102 57 chrX 16642520 16642536 -160331604 - L1MC3 LINE L1 -1300 4846 5319 2426 77 0 10 chrX 16642536 16642700 -160331440 - AluSx SINE Alu -15 297 136 2147 109 28 0 chrX 16642700 16642984 -160331156 - AluSx SINE Alu -20 292 1 2426 77 0 10 chrX 16642984 16643119 -160331021 - AluSx SINE Alu -176 136 1 1385 191 102 57 chrX 16643119 16643225 -160330915 - L1MC3 LINE L1 -826 5320 5220 969 149 0 0 chrX 16643239 16643380 -160330760 - FLAM_C SINE Alu -1 142 2 1622 154 85 7 chrX 16643380 16643652 -160330488 - AluJo SINE Alu -19 293 1 751 208 32 74 chrX 16643652 16643868 -160330272 - L1MC3 LINE L1 -943 5203 4997 1240 251 47 73 chrX 16644430 16644695 -160329445 - MER68 LTR ERV1 -37 525 280 2129 126 20 0 chrX 16644695 16644988 -160329152 - AluJb SINE Alu -13 299 1 1240 251 47 73 chrX 16644988 16645257 -160328883 - MER68 LTR ERV1 -282 280 5 2302 78 3 7 chrX 16645390 16645683 -160328457 - AluSx SINE Alu -20 292 1 350 241 12 0 chrX 16645831 16645914 -160328226 - MLT1J LTR MaLR -328 183 100 1819 182 23 7 chrX 16646022 16646329 -160327811 + AluJo SINE Alu 1 312 0 846 121 0 0 chrX 16646339 16646455 -160327685 + FLAM_C SINE Alu 1 116 -17 2448 92 0 0 chrX 16646558 16646864 -160327276 + AluSg SINE Alu 1 306 -4 864 171 0 0 chrX 16646880 16647020 -160327120 + FLAM_C SINE Alu 1 140 -3 24 0 0 0 chrX 16647020 16647044 -160327096 + AT_rich Low_complexity Low_complexity 1 24 0 2272 132 0 0 chrX 16647591 16647901 -160326239 + AluSx SINE Alu 1 310 -2 1942 91 42 4 chrX 16648449 16648712 -160325428 - AluSq SINE Alu -7 306 34 1832 228 101 6 chrX 16648964 16649459 -160324681 + MER34 LTR ERV1 1 542 0 536 177 28 14 chrX 16649523 16649664 -160324476 + CT-rich Low_complexity Low_complexity 4 146 0 2320 101 3 0 chrX 16649678 16649975 -160324165 - AluSq SINE Alu -15 298 1 1937 158 7 3 chrX 16649976 16650274 -160323866 - AluJb SINE Alu -13 299 1 2342 92 0 7 chrX 16650557 16650860 -160323280 - AluSg SINE Alu -9 301 1 2290 47 61 0 chrX 16650869 16651146 -160322994 - AluY SINE Alu -17 294 1 2177 92 58 0 chrX 16651209 16651501 -160322639 - AluSc SINE Alu 0 309 1 347 248 0 35 chrX 16652062 16652203 -160321937 + AluSg/x SINE Alu 167 302 0 1908 116 26 33 chrX 16652239 16652542 -160321598 + AluSx SINE Alu 1 301 -11 270 56 0 0 chrX 16652553 16652589 -160321551 + (TG)n Simple_repeat Simple_repeat 2 37 0 2382 71 0 0 chrX 16652589 16652871 -160321269 - AluSc SINE Alu -27 282 1 2430 70 0 52 chrX 16652945 16653272 -160320868 - AluSg SINE Alu 0 310 1 2375 102 0 0 chrX 16653691 16653996 -160320144 - AluSx SINE Alu -7 305 1 1732 72 0 42 chrX 16654061 16654107 -160320033 + L1M3 LINE L1 5571 5617 -554 1772 189 0 13 chrX 16654107 16654409 -160319731 + AluJo SINE Alu 2 299 -13 1732 72 0 42 chrX 16654409 16654625 -160319515 + L1M3 LINE L1 5617 5822 -349 839 129 8 8 chrX 16654641 16654765 -160319375 + FLAM_C SINE Alu 9 132 -11 2064 141 32 0 chrX 16654765 16655112 -160319028 + L1MB2 LINE L1 5814 6171 0 241 351 27 0 chrX 16655113 16655224 -160318916 - LTR67 LTR ERVL -15 542 429 2191 101 16 29 chrX 16656169 16656476 -160317664 - AluSx SINE Alu -9 303 1 207 0 0 0 chrX 16656557 16656580 -160317560 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 685 147 10 0 chrX 16656580 16656682 -160317458 + AluSg SINE Alu 2 104 -206 265 177 0 0 chrX 16657113 16657175 -160316965 + T-rich Low_complexity Low_complexity 1 62 0 2508 80 0 0 chrX 16657852 16658152 -160315988 - AluSg1 SINE Alu -9 300 1 679 272 34 53 chrX 16658244 16658509 -160315631 + MIR SINE MIR 3 262 0 1728 131 75 11 chrX 16658807 16659074 -160315066 - AluJo SINE Alu -28 284 1 2091 126 3 0 chrX 16659105 16659385 -160314755 + AluSx SINE Alu 1 282 -26 180 0 0 0 chrX 16659385 16659405 -160314735 + (CA)n Simple_repeat Simple_repeat 1 20 0 2471 82 0 0 chrX 16659564 16659867 -160314273 - AluSx SINE Alu -9 303 1 433 231 26 26 chrX 16660146 16660263 -160313877 - MIR3 SINE MIR -41 167 51 2288 84 3 3 chrX 16660273 16660593 -160313547 + AluSp SINE Alu 1 320 0 1741 63 5 18 chrX 16660593 16660814 -160313326 + AluSc SINE Alu 72 289 -20 274 284 0 0 chrX 16662681 16662769 -160311371 - L1MEc LINE L1 -4997 1399 1312 2396 86 0 16 chrX 16662875 16663190 -160310950 - AluY SINE Alu -1 310 1 2395 111 0 0 chrX 16663409 16663715 -160310425 + AluSx SINE Alu 1 306 -6 838 62 15 0 chrX 16664555 16664685 -160309455 + (TGGG)n Simple_repeat Simple_repeat 2 133 0 2191 92 58 0 chrX 16665396 16665688 -160308452 - AluSc SINE Alu 0 309 1 2237 65 7 24 chrX 16665787 16666078 -160308062 - AluY SINE Alu -25 286 1 281 261 0 39 chrX 16666626 16666806 -160307334 + G-rich Low_complexity Low_complexity 2 174 0 675 199 14 28 chrX 16666819 16667241 -160306899 + GA-rich Low_complexity Low_complexity 1 416 0 1845 209 16 16 chrX 16667389 16667763 -160306377 + MLT1A2 LTR MaLR 1 374 0 281 250 5 11 chrX 16668069 16668264 -160305876 + C-rich Low_complexity Low_complexity 1 193 0 2299 105 7 3 chrX 16668533 16668837 -160305303 + AluSx SINE Alu 1 305 -7 1031 207 28 28 chrX 16669948 16670199 -160303941 - AluJo SINE Alu -51 261 11 1075 180 64 9 chrX 16670208 16670441 -160303699 + MLT1A2-int LTR MaLR 1485 1730 -5 385 250 52 0 chrX 16670453 16670549 -160303591 + MLT1A2 LTR MaLR 1 101 -273 423 181 29 14 chrX 16670619 16670757 -160303383 + CT-rich Low_complexity Low_complexity 4 143 0 265 222 5 53 chrX 16670827 16671016 -160303124 + C-rich Low_complexity Low_complexity 1 180 0 1898 272 58 22 chrX 16671221 16671860 -160302280 + L1MEc LINE L1 115 776 -5620 506 243 7 29 chrX 16671897 16672206 -160301934 + C-rich Low_complexity Low_complexity 1 301 0 524 232 40 0 chrX 16672338 16672463 -160301677 - L1MC5 LINE L1 -726 7235 7106 1774 143 49 18 chrX 16672465 16672751 -160301389 + AluJb SINE Alu 3 297 -15 1754 134 0 11 chrX 16674626 16674887 -160299253 + AluJb SINE Alu 40 297 -15 315 292 145 65 chrX 16675195 16675596 -160298544 - L1 LINE L1 -2833 4375 3943 3837 166 52 13 chrX 16675728 16676492 -160297648 - L1 LINE L1 -6374 835 42 1125 274 37 9 chrX 16677280 16677608 -160296532 + L1M2 LINE L1 850 1186 -5663 542 314 13 0 chrX 16677614 16677773 -160296367 - REP3 LTR ERV -376 186 26 1140 230 7 4 chrX 16678241 16678515 -160295625 + L1M2 LINE L1 3262 3536 -3312 7539 167 34 5 chrX 16678632 16679413 -160294727 + L1M2 LINE L1 4155 4912 -1936 192 77 0 0 chrX 16679413 16679439 -160294701 + (CA)n Simple_repeat Simple_repeat 1 26 0 7539 167 34 5 chrX 16679439 16680211 -160293929 + L1M2 LINE L1 4912 5752 -1096 1924 122 3 64 chrX 16680562 16680874 -160293266 - AluSx SINE Alu -19 293 1 414 153 0 0 chrX 16683236 16683295 -160290845 - Alu SINE Alu -18 292 234 686 192 25 94 chrX 16683332 16683535 -160290605 - MLT1C LTR MaLR 0 467 279 851 130 0 0 chrX 16683657 16683795 -160290345 + L1 LINE L1 4695 4832 -1314 2918 125 55 11 chrX 16683845 16684301 -160289839 + L1PA15 LINE L1 5687 6162 -3 2165 238 85 17 chrX 16684302 16685129 -160289011 + L1M4 LINE L1 2786 3668 -2478 1241 212 39 4 chrX 16685642 16685873 -160288267 + MER8 DNA MER2_type 1 239 0 1427 99 28 28 chrX 16686325 16686536 -160287604 + AluSg/x SINE Alu 85 295 -17 2293 149 6 8 chrX 16686537 16686899 -160287241 - MSTA LTR MaLR -67 361 1 2748 138 11 42 chrX 16686899 16687127 -160287013 - L1PB4 LINE L1 -21 6135 5928 2229 116 0 0 chrX 16687127 16687421 -160286719 + AluSg SINE Alu 1 294 -16 2748 138 11 42 chrX 16687421 16687670 -160286470 - L1PB4 LINE L1 -228 5928 5673 196 288 25 50 chrX 16687794 16687874 -160286266 - MER5B DNA MER1_type -98 80 3 2331 73 0 17 chrX 16689070 16689371 -160284769 - AluY SINE Alu -15 296 1 777 175 0 0 chrX 16689382 16689502 -160284638 - L1PB4 LINE L1 -8 6148 6029 36059 49 3 3 chrX 16689602 16694823 -160279317 + L1PA5 LINE L1 933 6148 -6 300 281 21 0 chrX 16694924 16695020 -160279120 - L1ME LINE L1 -278 5843 5746 2505 53 0 3 chrX 16695439 16695739 -160278401 + AluY SINE Alu 1 299 -12 859 138 31 0 chrX 16695752 16695882 -160278258 + AluJb SINE Alu 164 297 -15 438 92 15 0 chrX 16695886 16695951 -160278189 + L1PA16 LINE L1 6083 6148 -18 496 122 0 0 chrX 16695966 16696040 -160278100 + L1PB4 LINE L1 6078 6151 -5 3949 36 0 0 chrX 16696593 16697036 -160277104 - L1PA5 LINE L1 -4 6150 5708 1950 162 0 3 chrX 16697421 16697711 -160276429 + AluJb SINE Alu 1 289 -23 1083 270 20 20 chrX 16699896 16700192 -160273948 - REP3 LTR ERV -266 296 1 5090 148 40 15 chrX 16700857 16701594 -160272546 + L1MA9 LINE L1 5407 6171 -141 240 35 0 0 chrX 16701594 16701623 -160272517 + (CA)n Simple_repeat Simple_repeat 2 30 0 5090 148 40 15 chrX 16701623 16701761 -160272379 + L1MA9 LINE L1 6171 6304 -8 1951 143 43 70 chrX 16702168 16702566 -160271574 + MLT1B LTR MaLR 1 387 -3 960 133 78 0 chrX 16702713 16702879 -160271261 + L1MA9 LINE L1 5917 6095 -217 2471 72 0 16 chrX 16703873 16704179 -160269961 + AluSp SINE Alu 1 301 -12 19539 43 2 0 chrX 16705235 16708271 -160265869 - L1PA5 LINE L1 -6 6148 3111 1353 126 0 0 chrX 16708373 16708571 -160265569 - L1P4 LINE L1 -399 5767 5570 301 91 0 0 chrX 16708572 16708616 -160265524 + L1MA1 LINE L1 6153 6196 -106 3823 159 11 37 chrX 16709288 16709449 -160264691 - L1MA4A LINE L1 -24 6279 6115 2317 88 7 0 chrX 16709449 16709745 -160264395 - AluSg SINE Alu -12 298 1 3823 159 11 37 chrX 16709745 16710396 -160263744 - L1MA4A LINE L1 -188 6115 5427 1689 130 78 82 chrX 16710396 16710810 -160263330 + THE1B LTR MaLR 1 389 -39 2186 115 0 3 chrX 16710810 16711106 -160263034 - AluSx SINE Alu -17 295 1 1689 130 78 82 chrX 16711106 16711146 -160262994 + THE1B LTR MaLR 389 428 0 1660 137 31 0 chrX 16711146 16711528 -160262612 - L1M1 LINE L1 -743 5403 5042 297 367 48 5 chrX 16711707 16711914 -160262226 + MIR SINE MIR 19 234 -28 180 286 82 0 chrX 16712753 16712802 -160261338 - L2 LINE L2 -253 3060 3008 2171 102 3 3 chrX 16713265 16713580 -160260560 + AluSx SINE Alu 1 315 0 637 53 11 21 chrX 16713993 16714088 -160260052 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 506 179 42 11 chrX 16714091 16714186 -160259954 - MLT1B LTR MaLR -46 459 362 * 659 136 45 9 chrX 16714181 16714291 -160259849 - MLT1D LTR MaLR -17 488 375 869 85 0 0 chrX 16714298 16714404 -160259736 + AluSq/x SINE Alu 5 110 -203 880 271 9 18 chrX 16715150 16715371 -160258769 + REP3 LTR ERV 1 219 -343 23 0 0 0 chrX 16715625 16715648 -160258492 + AT_rich Low_complexity Low_complexity 1 23 0 380 340 0 7 chrX 16715768 16715915 -160258225 - L1M4c LINE L1 -6176 208 63 814 165 8 0 chrX 16717230 16717363 -160256777 - AluJo SINE Alu -178 134 1 2991 68 3 3 chrX 16719063 16719418 -160254722 - THE1A LTR MaLR 0 355 1 425 276 8 8 chrX 16721902 16722029 -160252111 - L1M4c LINE L1 -6225 159 33 446 312 51 13 chrX 16722064 16722301 -160251839 - Charlie2 DNA MER1_type -2567 295 50 2278 104 3 0 chrX 16722727 16723026 -160251114 - AluSx SINE Alu -12 300 1 1851 159 16 29 chrX 16724244 16724552 -160249588 - AluJo SINE Alu -7 305 2 700 130 19 0 chrX 16724621 16724729 -160249411 - L1MA6 LINE L1 0 6300 6191 1165 195 17 17 chrX 16725171 16725407 -160248733 + MLT1F LTR MaLR 256 491 -51 4453 181 41 5 chrX 16725425 16726507 -160247633 - L1MB7 LINE L1 -41 6143 5025 241 290 65 32 chrX 16726519 16726674 -160247466 - Charlie2 DNA MER1_type -2652 210 51 2016 107 0 40 chrX 16727023 16727323 -160246817 - AluSx SINE Alu -24 288 1 2245 50 0 0 chrX 16727696 16727957 -160246183 - AluY SINE Alu -50 261 1 865 247 34 84 chrX 16729258 16729578 -160244562 - MLT1B LTR MaLR -86 304 1 1057 283 14 11 chrX 16730473 16730749 -160243391 + REP3 LTR ERV 26 302 -260 2298 108 0 3 chrX 16731389 16731695 -160242445 + AluSx SINE Alu 1 305 -7 4811 135 23 61 chrX 16732066 16732656 -160241484 - LTR39 LTR ERV1 0 783 230 1839 158 0 3 chrX 16732656 16732978 -160241162 - AluJb SINE Alu 0 321 1 4811 135 23 61 chrX 16732978 16733200 -160240940 - LTR39 LTR ERV1 -553 230 1 276 309 47 40 chrX 16734331 16734480 -160239660 + MER70-int LTR ERVL 1936 2085 -2938 2050 120 7 0 chrX 16735507 16735783 -160238357 + AluSc SINE Alu 1 278 -31 345 100 0 0 chrX 16735785 16735835 -160238305 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 330 287 60 46 chrX 16736929 16737033 -160237107 - Charlie2 DNA MER1_type -2516 266 165 2533 85 47 49 chrX 16737033 16737398 -160236742 + THE1B LTR MaLR 1 364 0 330 287 60 46 chrX 16737398 16737509 -160236631 - Charlie2 DNA MER1_type -2617 165 48 6375 104 23 2 chrX 16737823 16738733 -160235407 - L1P LINE L1 -5217 929 1 962 349 137 30 chrX 16738888 16739116 -160235024 - L2 LINE L2 -1804 1510 1308 1796 181 42 25 chrX 16739116 16739475 -160234665 + MLT1A1 LTR MaLR 1 365 0 962 349 137 30 chrX 16739475 16740257 -160233883 - L2 LINE L2 -2006 1308 392 216 368 0 0 chrX 16740350 16740437 -160233703 + MIR3 SINE MIR 104 190 -18 448 220 70 86 chrX 16740953 16741139 -160233001 - MER112 DNA MER1_type 0 260 78 202 185 19 19 chrX 16741141 16741195 -160232945 + (TA)n Simple_repeat Simple_repeat 1 54 0 420 198 12 0 chrX 16741196 16741277 -160232863 - MER112 DNA MER1_type -176 84 3 517 305 85 50 chrX 16741383 16741642 -160232498 - MLT1I LTR MaLR -38 371 104 264 30 0 0 chrX 16742721 16742754 -160231386 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 354 44 18 chrX 16743323 16743436 -160230704 - MIR3 SINE MIR -14 194 79 484 116 0 14 chrX 16743436 16743505 -160230635 - AluJ/FRAM SINE Alu -17 295 228 551 265 34 16 chrX 16743651 16743812 -160230328 + L1ME2 LINE L1 6010 6169 -1 9716 157 13 6 chrX 16743842 16744829 -160229311 + L1PB1 LINE L1 3400 4378 -1773 549 0 0 0 chrX 16744829 16744890 -160229250 + (TAAAA)n Simple_repeat Simple_repeat 2 62 0 9716 157 13 6 chrX 16744890 16746625 -160227515 + L1PB1 LINE L1 4378 6144 -7 6669 92 33 2 chrX 16748453 16749403 -160224737 - L1MA2 LINE L1 0 6304 5326 1244 181 49 86 chrX 16752965 16753290 -160220850 + MLT1B LTR MaLR 78 390 0 763 43 0 0 chrX 16753658 16753752 -160220388 - L1P LINE L1 -3183 2963 2870 * 20650 73 6 0 chrX 16753749 16756400 -160217740 - L1P LINE L1 -3481 2665 1 535 139 0 0 chrX 16756423 16756509 -160217631 - L1MA4 LINE L1 0 6300 6215 2278 100 0 3 chrX 16759141 16759440 -160214700 + AluSq SINE Alu 1 298 -15 329 340 93 19 chrX 16759907 16760069 -160214071 - HERVL40 LTR ERVL -1848 3682 3509 2172 120 0 0 chrX 16760287 16760578 -160213562 + AluSg SINE Alu 1 291 -19 2224 129 0 0 chrX 16761553 16761856 -160212284 + AluJb SINE Alu 1 303 -9 2292 43 47 0 chrX 16761915 16762194 -160211946 + AluY SINE Alu 16 307 -4 859 167 0 0 chrX 16762286 16762424 -160211716 + FLAM_C SINE Alu 1 138 -5 22 0 0 0 chrX 16762431 16762453 -160211687 + AT_rich Low_complexity Low_complexity 1 22 0 462 182 23 0 chrX 16763495 16763583 -160210557 - L1M4 LINE L1 -466 5718 5629 1174 234 11 0 chrX 16763623 16763884 -160210256 + L1MB7 LINE L1 5909 6172 -12 1281 246 24 3 chrX 16763895 16764188 -160209952 - MLT1F LTR MaLR -54 488 190 6033 113 41 22 chrX 16764430 16765381 -160208759 - LTR5 LTR ERVK 0 969 1 421 200 90 0 chrX 16765788 16765888 -160208252 + L2 LINE L2 3189 3297 -16 1983 170 38 32 chrX 16765891 16767457 -160206683 + L1MB7 LINE L1 4957 6180 0 593 235 69 9 chrX 16767467 16767638 -160206502 - MLT1F LTR MaLR -338 229 70 531 299 7 14 chrX 16767659 16767806 -160206334 - MIR SINE MIR -106 156 11 2170 110 0 10 chrX 16767910 16768209 -160205931 + AluSg SINE Alu 1 296 -14 2245 110 0 0 chrX 16768267 16768567 -160205573 - AluSx SINE Alu -10 302 3 226 254 0 0 chrX 16768568 16768623 -160205517 + MER5B DNA MER1_type 120 174 -4 2763 72 62 13 chrX 16769672 16770036 -160204104 + L1MA3 LINE L1 5892 6278 -27 264 100 0 0 chrX 16770036 16770076 -160204064 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 2763 72 62 13 chrX 16770076 16770099 -160204041 + L1MA3 LINE L1 6278 6298 -7 1419 70 9 3 chrX 16770169 16770399 -160203741 + AluSx SINE Alu 14 310 0 21 0 0 0 chrX 16771190 16771211 -160202929 + AT_rich Low_complexity Low_complexity 1 21 0 324 126 34 193 chrX 16771389 16771508 -160202632 - L1MA7 LINE L1 -216 6075 5976 920 168 69 0 chrX 16771509 16771711 -160202429 + L1MA7 LINE L1 6074 6289 -2 186 143 0 0 chrX 16772203 16772238 -160201902 + (CTG)n Simple_repeat Simple_repeat 3 37 0 2306 79 0 26 chrX 16773489 16773794 -160200346 - AluSg SINE Alu -13 297 1 226 212 224 94 chrX 16774058 16774205 -160199935 + L1ME4a LINE L1 5797 5924 -197 2235 100 0 25 chrX 16774205 16774525 -160199615 + AluSx SINE Alu 1 312 0 226 212 224 94 chrX 16774525 16774632 -160199508 + L1ME4a LINE L1 5924 6084 -37 1756 210 60 7 chrX 16775568 16776001 -160198139 + Charlie4a DNA MER1_type 26 481 -27 2267 72 7 0 chrX 16776573 16776849 -160197291 + AluSc SINE Alu 23 300 -9 2259 99 0 10 chrX 16778041 16778345 -160195795 + AluSx SINE Alu 1 301 -11 445 192 0 0 chrX 16778539 16778617 -160195523 + MER112 DNA MER1_type 8 85 -175 22 80 0 0 chrX 16779220 16779270 -160194870 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 16780093 16780129 -160194011 + AT_rich Low_complexity Low_complexity 1 36 0 426 231 90 34 chrX 16780131 16780346 -160193794 + L1ME LINE L1 5372 5612 -509 2379 75 3 26 chrX 16780420 16780728 -160193412 + AluSp SINE Alu 1 301 -12 22 35 0 0 chrX 16781040 16781069 -160193071 + AT_rich Low_complexity Low_complexity 1 29 0 1976 158 0 3 chrX 16781069 16781366 -160192774 + AluJb SINE Alu 1 296 -16 1064 171 42 26 chrX 16781413 16781606 -160192534 - AluJo SINE Alu -31 281 86 1287 131 103 0 chrX 16781890 16782104 -160192036 + MER46A DNA MER2_type 1 236 0 248 274 176 0 chrX 16782269 16782371 -160191769 + L1ME LINE L1 5610 5729 -392 311 184 0 0 chrX 16782426 16782475 -160191665 + Tigger5 DNA MER2_type 7 55 -2268 * 434 191 0 91 chrX 16782469 16782549 -160191591 + Tigger5 DNA MER2_type 2224 2293 -30 2198 117 20 0 chrX 16782549 16782849 -160191291 + AluSx SINE Alu 1 306 -6 434 191 0 91 chrX 16782849 16782878 -160191262 + Tigger5 DNA MER2_type 2293 2323 0 2370 91 0 0 chrX 16782906 16783202 -160190938 + AluSx SINE Alu 1 296 -16 1834 161 0 13 chrX 16783211 16783515 -160190625 + AluJo SINE Alu 1 300 -12 2084 114 38 3 chrX 16783961 16784250 -160189890 + AluSx SINE Alu 1 299 -13 2124 94 0 21 chrX 16784255 16784565 -160189575 + AluSc SINE Alu 1 304 0 501 301 33 11 chrX 16784641 16784824 -160189316 - MIR3 SINE MIR -6 202 16 1815 125 38 79 chrX 16785101 16785167 -160188973 - L1MB8 LINE L1 0 6178 6111 1635 153 0 75 chrX 16785167 16785501 -160188639 + AluJo SINE Alu 1 309 -3 2460 52 7 13 chrX 16785506 16785812 -160188328 + AluY SINE Alu 1 304 -7 1815 125 38 79 chrX 16785812 16786131 -160188009 - L1MB8 LINE L1 -71 6107 5803 22 43 0 21 chrX 16786295 16786316 -160187824 + AT_rich Low_complexity Low_complexity 1 21 -25 2124 138 0 0 chrX 16786316 16786613 -160187527 + AluJb SINE Alu 1 297 -15 22 43 0 21 chrX 16786613 16786638 -160187502 + AT_rich Low_complexity Low_complexity 21 46 0 210 71 0 0 chrX 16786792 16786820 -160187320 + (TG)n Simple_repeat Simple_repeat 2 29 0 923 136 0 27 chrX 16787252 16787399 -160186741 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chrX 16787408 16787428 -160186712 + (TA)n Simple_repeat Simple_repeat 1 20 0 243 167 0 125 chrX 16787639 16787711 -160186429 + U2 snRNA snRNA 1 63 -125 2406 59 7 23 chrX 16788312 16788617 -160185523 + AluY SINE Alu 1 300 -11 2258 110 0 3 chrX 16789053 16789352 -160184788 - AluSx SINE Alu -14 298 1 274 219 96 0 chrX 16789400 16789473 -160184667 + L2 LINE L2 3190 3269 -44 183 42 0 0 chrX 16790365 16790389 -160183751 + (T)n Simple_repeat Simple_repeat 1 24 0 670 264 88 42 chrX 16791111 16791350 -160182790 - MIR SINE MIR -3 259 10 1774 158 28 0 chrX 16791757 16792041 -160182099 - AluJb SINE Alu -20 292 1 729 157 0 0 chrX 16792482 16792597 -160181543 - FRAM SINE Alu -53 123 9 181 241 52 0 chrX 16792745 16792803 -160181337 - L2 LINE L2 -54 3259 3199 2245 115 0 0 chrX 16792889 16793194 -160180946 - AluSx SINE Alu -7 305 1 958 189 31 45 chrX 16793491 16793580 -160180560 + MER20 DNA MER1_type 1 90 -129 2543 43 0 16 chrX 16793580 16793883 -160180257 + AluY SINE Alu 1 298 -13 958 189 31 45 chrX 16793883 16794015 -160180125 + MER20 DNA MER1_type 90 219 0 2404 84 0 0 chrX 16794165 16794461 -160179679 + AluSx SINE Alu 1 296 -16 2366 89 0 0 chrX 16794478 16794771 -160179369 + AluSp SINE Alu 1 293 -20 2027 122 7 3 chrX 16794790 16795078 -160179062 + AluSx SINE Alu 1 289 -23 692 107 0 2 chrX 16795574 16795818 -160178322 + AluSx SINE Alu 1 290 -20 213 211 0 0 chrX 16795848 16795905 -160178235 + (TA)n Simple_repeat Simple_repeat 2 58 0 2026 170 0 0 chrX 16795923 16796235 -160177905 + AluJb SINE Alu 1 312 0 3240 135 18 162 chrX 16796241 16797287 -160176853 - MER21A LTR ERV1 -20 911 70 445 178 2 0 chrX 16797382 16797465 -160176675 - MER21A LTR ERV1 -779 84 1 27 0 0 0 chrX 16797674 16797701 -160176439 + AT_rich Low_complexity Low_complexity 1 27 0 1679 121 71 0 chrX 16797707 16797946 -160176194 - AluSx SINE Alu -56 256 1 319 295 101 16 chrX 16798054 16798183 -160175957 - L2 LINE L2 0 3272 3133 2040 130 0 7 chrX 16798199 16798504 -160175636 + AluJb SINE Alu 1 303 0 2041 140 0 7 chrX 16798864 16799171 -160174969 + AluJb SINE Alu 1 305 -7 236 109 0 22 chrX 16799348 16799394 -160174746 + (TGGGGG)n Simple_repeat Simple_repeat 4 48 0 484 221 40 34 chrX 16799581 16799730 -160174410 + MER112 DNA MER1_type 10 159 -101 373 83 14 14 chrX 16799786 16799858 -160174282 + (TA)n Simple_repeat Simple_repeat 2 73 0 2391 68 0 0 chrX 16799860 16800138 -160174002 - AluSg SINE Alu -31 279 2 1928 128 7 7 chrX 16800156 16800446 -160173694 - AluSx SINE Alu -22 290 1 2197 99 3 23 chrX 16800537 16800840 -160173300 + AluSx SINE Alu 1 297 -15 624 224 17 34 chrX 16801056 16801235 -160172905 + MIR SINE MIR 57 232 -30 1866 153 3 0 chrX 16801271 16801553 -160172587 - AluJb SINE Alu -11 301 19 825 86 0 0 chrX 16801553 16801658 -160172482 - AluSq/x SINE Alu -206 106 2 1823 137 47 4 chrX 16801666 16801944 -160172196 - AluJo SINE Alu -22 290 1 2377 105 0 0 chrX 16802144 16802448 -160171692 + AluSg SINE Alu 5 308 -2 2434 85 0 0 chrX 16802472 16802777 -160171363 + AluSx SINE Alu 1 305 -7 365 122 84 93 chrX 16802833 16802940 -160171200 + MLT1H1 LTR MaLR 369 474 -81 2385 76 0 0 chrX 16803410 16803700 -160170440 - AluSx SINE Alu -22 290 1 1638 150 20 65 chrX 16803999 16804139 -160170001 - AluJo SINE Alu -30 282 160 4548 128 47 42 chrX 16804139 16804806 -160169334 + LTR25 LTR ERV1 1 674 -120 2111 85 68 4 chrX 16804806 16805087 -160169053 - AluSp SINE Alu -14 299 1 4548 128 47 42 chrX 16805087 16805209 -160168931 + LTR25 LTR ERV1 674 794 0 1638 150 20 65 chrX 16805209 16805362 -160168778 - AluJo SINE Alu -152 160 2 403 266 86 66 chrX 16805369 16805708 -160168432 + L1ME LINE L1 5443 5800 -321 1758 133 76 0 chrX 16806021 16806285 -160167855 - AluJo SINE Alu -28 284 1 579 260 31 55 chrX 16806388 16806642 -160167498 + MIR SINE MIR 15 262 0 216 0 0 0 chrX 16807050 16807074 -160167066 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2180 79 22 7 chrX 16807074 16807352 -160166788 - AluSc SINE Alu -27 282 1 2535 54 0 32 chrX 16807901 16808214 -160165926 - AluY SINE Alu -8 303 1 2339 81 3 7 chrX 16809717 16810012 -160164128 + AluSx SINE Alu 1 294 -18 2423 83 7 0 chrX 16810012 16810314 -160163826 + AluSp SINE Alu 1 304 -9 1609 135 13 74 chrX 16810748 16811060 -160163080 + AluJo SINE Alu 1 293 -19 2197 82 7 14 chrX 16811190 16811503 -160162637 + AluSc SINE Alu 1 311 0 21 36 0 0 chrX 16811578 16811606 -160162534 + AT_rich Low_complexity Low_complexity 1 28 0 1333 228 104 54 chrX 16811891 16811980 -160162160 + L1MC4 LINE L1 7457 7540 -502 2550 70 3 6 chrX 16811980 16812294 -160161846 + AluSp SINE Alu 1 313 0 1333 228 104 54 chrX 16812294 16812762 -160161378 + L1MC4 LINE L1 7540 8042 0 2296 112 0 0 chrX 16812844 16813147 -160160993 + AluSq SINE Alu 1 303 -10 1924 147 0 10 chrX 16813632 16813924 -160160216 - AluSx SINE Alu -23 289 1 1371 232 60 6 chrX 16813950 16814299 -160159841 + L1MC4 LINE L1 6700 7067 -975 1750 133 92 0 chrX 16814314 16814585 -160159555 + AluSq SINE Alu 10 305 -8 941 169 6 44 chrX 16814585 16814768 -160159372 + AluJb SINE Alu 134 309 -3 1948 153 0 10 chrX 16814770 16815084 -160159056 + AluSx SINE Alu 1 311 -1 486 243 90 49 chrX 16815147 16815840 -160158300 + L1MC5 LINE L1 6992 7523 -438 2355 98 0 16 chrX 16815851 16816158 -160157982 + AluSq SINE Alu 1 302 -11 700 106 0 19 chrX 16816244 16816348 -160157792 - L1MB8 LINE L1 0 6178 6077 2203 116 0 0 chrX 16816353 16816654 -160157486 - AluSx SINE Alu -11 301 1 376 177 81 50 chrX 16816656 16816846 -160157294 + L1MC5 LINE L1 7696 7931 -30 1708 133 0 12 chrX 16817029 16817278 -160156862 + AluSx SINE Alu 1 246 -66 213 39 0 0 chrX 16817281 16817307 -160156833 + (A)n Simple_repeat Simple_repeat 1 26 0 1616 176 7 23 chrX 16817483 16817789 -160156351 + AluJo SINE Alu 1 301 -11 1211 116 145 5 chrX 16818113 16818320 -160155820 + MER46A DNA MER2_type 1 236 0 1703 169 35 17 chrX 16818356 16818646 -160155494 - AluJb SINE Alu -15 297 3 331 293 75 42 chrX 16819186 16819398 -160154742 + MER20 DNA MER1_type 1 219 0 380 291 82 19 chrX 16819404 16819562 -160154578 + L2 LINE L2 3145 3312 -1 456 184 194 0 chrX 16819580 16819683 -160154457 + L2 LINE L2 3188 3310 -3 941 123 175 76 chrX 16820007 16820218 -160153922 - MER46A DNA MER2_type -3 233 2 1952 134 3 13 chrX 16820423 16820586 -160153554 - AluJb SINE Alu -15 297 137 2109 120 3 7 chrX 16820586 16820887 -160153253 - AluSg SINE Alu -10 300 1 1952 134 3 13 chrX 16820887 16821021 -160153119 - AluJb SINE Alu -175 137 3 24 0 0 0 chrX 16821511 16821535 -160152605 + AT_rich Low_complexity Low_complexity 1 24 0 2214 118 0 0 chrX 16821539 16821836 -160152304 + AluSx SINE Alu 1 297 -15 529 277 31 41 chrX 16821844 16822039 -160152101 - MIR SINE MIR -21 241 49 2609 56 0 3 chrX 16822357 16822662 -160151478 + AluY SINE Alu 1 304 -7 1966 141 7 0 chrX 16822721 16823018 -160151122 + AluSx SINE Alu 1 299 -13 2012 93 107 19 chrX 16823230 16823540 -160150600 - MER1B DNA MER1_type 0 337 1 2524 41 10 0 chrX 16823575 16823866 -160150274 - AluY SINE Alu -17 294 1 1989 207 25 18 chrX 16824049 16824498 -160149642 + MLT1C LTR MaLR 1 452 -15 1161 147 0 49 chrX 16824494 16824698 -160149442 + MER2 DNA MER2_type 6 199 -146 * 669 148 0 0 chrX 16824706 16824807 -160149333 + AluJb SINE Alu 18 118 -194 2110 112 3 7 chrX 16824817 16825126 -160149014 - AluSx SINE Alu 0 308 1 453 211 26 0 chrX 16825194 16825270 -160148870 + MER2 DNA MER2_type 268 345 0 2437 91 0 0 chrX 16826015 16826312 -160147828 + AluSq SINE Alu 1 297 -16 183 265 20 88 chrX 16826623 16826725 -160147415 - MIR3 SINE MIR -2 206 112 260 222 32 0 chrX 16826985 16827048 -160147092 - MIR SINE MIR -14 248 184 2293 62 48 0 chrX 16827068 16827357 -160146783 + AluSc SINE Alu 1 303 -6 249 362 110 35 chrX 16827637 16827714 -160146426 - L2 LINE L2 -839 2475 2405 1844 176 7 3 chrX 16827714 16828010 -160146130 + AluJo SINE Alu 1 297 -15 249 362 110 35 chrX 16828010 16828090 -160146050 - L2 LINE L2 -909 2405 2332 1586 178 10 20 chrX 16828090 16828223 -160145917 + AluJo SINE Alu 5 138 -174 1930 148 3 3 chrX 16828223 16828521 -160145619 + AluJb SINE Alu 1 298 -14 1586 178 10 20 chrX 16828521 16828685 -160145455 + AluJo SINE Alu 138 299 -13 249 362 110 35 chrX 16828685 16828808 -160145332 - L2 LINE L2 -982 2332 2173 288 176 88 55 chrX 16828869 16828922 -160145218 + L1MB3 LINE L1 6090 6149 -34 2195 131 0 0 chrX 16828922 16829228 -160144912 + AluSx SINE Alu 1 306 -6 288 176 88 55 chrX 16829228 16829265 -160144875 + L1MB3 LINE L1 6149 6183 0 2035 115 7 3 chrX 16829268 16829554 -160144586 + AluJo SINE Alu 1 287 -25 35 56 0 34 chrX 16829555 16829644 -160144496 + AT_rich Low_complexity Low_complexity 1 86 0 2215 72 0 4 chrX 16829649 16829926 -160144214 + AluSq SINE Alu 1 276 -37 181 57 57 0 chrX 16829933 16829968 -160144172 + A-rich Low_complexity Low_complexity 3 39 0 297 345 169 0 chrX 16829990 16830251 -160143889 - L2 LINE L2 -1162 2152 1848 1205 141 0 0 chrX 16830389 16830566 -160143574 - AluSg/x SINE Alu -2 308 132 2155 87 31 0 chrX 16830566 16830852 -160143288 - AluSx SINE Alu -17 295 1 219 356 63 6 chrX 16830853 16831027 -160143113 - L2 LINE L2 -1604 1710 1527 1611 167 4 0 chrX 16831100 16831357 -160142783 - AluJo SINE Alu -54 258 1 203 272 0 62 chrX 16831367 16831448 -160142692 + L3b LINE CR1 1195 1270 -313 2228 108 3 0 chrX 16831449 16831746 -160142394 + AluSq SINE Alu 1 298 -15 780 161 16 0 chrX 16831746 16831870 -160142270 + FLAM_C SINE Alu 1 126 -7 2477 190 119 31 chrX 16832176 16833361 -160140779 + L1MC4 LINE L1 6459 7902 -140 2454 80 0 0 chrX 16833362 16833663 -160140477 - AluY SINE Alu -10 301 1 245 182 0 0 chrX 16833670 16833714 -160140426 + L1MC4 LINE L1 7984 8027 -15 2409 80 7 0 chrX 16833825 16834125 -160140015 - AluSp SINE Alu -11 302 1 835 118 30 7 chrX 16834371 16834506 -160139634 + L1MB8 LINE L1 6041 6178 0 2281 102 7 3 chrX 16834926 16835230 -160138910 + AluSx SINE Alu 1 305 -7 189 74 0 0 chrX 16835347 16835374 -160138766 + (TA)n Simple_repeat Simple_repeat 1 27 0 236 336 10 10 chrX 16835528 16835632 -160138508 + GA-rich Low_complexity Low_complexity 4 107 0 671 240 106 92 chrX 16835719 16836315 -160137825 + L1MC4 LINE L1 7351 8033 -8 189 244 42 92 chrX 16836572 16836691 -160137449 + MIR SINE MIR 110 222 -40 1254 102 11 6 chrX 16837310 16837487 -160136653 - AluSg/x SINE Alu -9 301 124 216 0 0 0 chrX 16837487 16837511 -160136629 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2275 82 3 0 chrX 16837511 16837793 -160136347 - AluSq SINE Alu -30 283 1 2017 83 12 0 chrX 16838482 16838736 -160135404 + AluSg1 SINE Alu 45 301 -8 1775 105 116 8 chrX 16838736 16839003 -160135137 + AluSg1 SINE Alu 14 309 0 2053 141 0 0 chrX 16840271 16840570 -160133570 + AluJb SINE Alu 3 301 -11 2316 113 0 0 chrX 16840763 16841074 -160133066 + AluSx SINE Alu 1 311 -1 2449 70 3 0 chrX 16841599 16841899 -160132241 - AluY SINE Alu -10 301 1 2119 128 10 0 chrX 16842059 16842348 -160131792 + AluSx SINE Alu 1 292 -20 1968 109 65 0 chrX 16842708 16842983 -160131157 + AluSq SINE Alu 1 293 -20 793 217 9 74 chrX 16842986 16843203 -160130937 + MIR SINE MIR 60 262 0 1795 135 49 17 chrX 16843256 16843544 -160130596 + AluJb SINE Alu 1 297 -15 2126 110 14 0 chrX 16843848 16844138 -160130002 - AluSx SINE Alu -17 295 2 465 19 0 0 chrX 16844446 16844500 -160129640 + (CA)n Simple_repeat Simple_repeat 2 55 0 1350 45 7 0 chrX 16844710 16844865 -160129275 + L1PA3 LINE L1 5995 6150 -5 1368 148 5 0 chrX 16844875 16845092 -160129048 + L1M2 LINE L1 5464 5681 -631 2024 127 3 3 chrX 16845419 16845711 -160128429 - AluSx SINE Alu -20 292 1 381 58 0 0 chrX 16845942 16845994 -160128146 + (GA)n Simple_repeat Simple_repeat 1 52 0 685 169 33 87 chrX 16847288 16847348 -160126792 - MER5B DNA MER1_type -5 173 111 2336 86 7 0 chrX 16847348 16847650 -160126490 + AluSx SINE Alu 1 304 -8 685 169 33 87 chrX 16847650 16847772 -160126368 - MER5B DNA MER1_type -67 111 1 441 285 30 45 chrX 16847901 16848101 -160126039 - L2 LINE L2 -5 3308 3112 461 268 76 79 chrX 16848733 16849050 -160125090 - MLT1K LTR MaLR -109 479 164 2299 94 16 3 chrX 16849167 16849476 -160124664 + AluSq SINE Alu 1 313 0 742 139 0 0 chrX 16850030 16850138 -160124002 + AluJo SINE Alu 28 135 -177 2554 68 3 0 chrX 16850180 16850488 -160123652 - AluSg SINE Alu -1 309 1 1887 122 3 10 chrX 16850743 16851031 -160123109 + AluSx SINE Alu 1 286 -26 2218 110 3 0 chrX 16851095 16851396 -160122744 + AluSg SINE Alu 1 302 -8 1778 146 14 31 chrX 16854690 16854984 -160119156 + AluJo SINE Alu 1 289 -23 3768 143 7 3 chrX 16855773 16856341 -160117799 + L1PB3 LINE L1 5583 6152 -2 2146 110 3 7 chrX 16856811 16857110 -160117030 + AluSx SINE Alu 3 300 -12 2351 72 0 14 chrX 16858120 16858411 -160115729 + AluSx SINE Alu 17 303 -9 1773 48 0 0 chrX 16858783 16858991 -160115149 + THE1-int LTR MaLR 231 438 -1142 1397 144 39 0 chrX 16858991 16859220 -160114920 - MSTA LTR MaLR -190 238 1 342 339 94 39 chrX 16859221 16859401 -160114739 - L1M2 LINE L1 -5989 860 671 889 338 20 27 chrX 16859461 16859864 -160114276 - L1PA13 LINE L1 -6349 438 39 477 0 0 0 chrX 16860272 16860325 -160113815 + (CA)n Simple_repeat Simple_repeat 2 54 0 1740 183 73 82 chrX 16860325 16860790 -160113350 + MLT1C LTR MaLR 7 467 0 7426 188 88 15 chrX 16860877 16862369 -160111771 + L1M1 LINE L1 22 1622 -5943 16500 158 19 16 chrX 16862374 16863165 -160110975 + L1M1 LINE L1 2652 3439 -4285 2029 123 6 50 chrX 16863165 16863483 -160110657 + AluSx SINE Alu 1 304 -8 16500 158 19 16 chrX 16863483 16865779 -160108361 + L1M1 LINE L1 3439 5765 -1959 2169 95 0 0 chrX 16865779 16866053 -160108087 + AluSc SINE Alu 1 274 -35 16500 158 19 16 chrX 16866053 16867303 -160106837 + L1M1 LINE L1 5765 7010 -714 930 193 5 11 chrX 16867303 16867490 -160106650 + AluJo SINE Alu 121 306 -6 4973 93 10 21 chrX 16867497 16868204 -160105936 + L1MA3 LINE L1 5599 6297 -8 5892 110 28 6 chrX 16868288 16869143 -160104997 + Tigger1 DNA MER2_type 1545 2418 0 5852 159 17 26 chrX 16869703 16870383 -160103757 - L1MA10 LINE L1 -8 6326 5659 2252 89 34 0 chrX 16870383 16870675 -160103465 + AluSx SINE Alu 1 302 -10 5852 159 17 26 chrX 16870675 16871304 -160102836 - L1MA10 LINE L1 -675 5659 5026 316 333 51 88 chrX 16871814 16872165 -160101975 + L2 LINE L2 2511 2848 -466 207 264 179 60 chrX 16872172 16872373 -160101767 + L2 LINE L2 3008 3232 -81 330 211 48 58 chrX 16873483 16873587 -160100553 - L1MA8 LINE L1 -12 6279 6177 * 689 122 73 0 chrX 16873585 16873708 -160100432 + L1MA8 LINE L1 6042 6173 -118 1108 283 72 42 chrX 16873791 16874292 -160099848 - LTR33 LTR ERVL -4 517 2 702 184 152 6 chrX 16874516 16874674 -160099466 + MER5A DNA MER1_type 9 189 0 2116 74 0 67 chrX 16875426 16875738 -160098402 + AluSc SINE Alu 1 291 -18 597 173 60 0 chrX 16875980 16876113 -160098027 + LTR16C LTR ERVL 351 491 0 440 219 95 0 chrX 16876250 16876355 -160097785 + L2 LINE L2 3189 3303 -10 1943 171 154 47 chrX 16877718 16878256 -160095884 - LTR4 LTR ERV1 0 596 1 412 141 0 0 chrX 16879290 16879354 -160094786 - Tigger7 DNA MER2_type -28 2559 2496 * 2927 165 37 2 chrX 16879348 16879856 -160094284 - Tigger7 DNA MER2_type -1961 526 1 831 255 99 37 chrX 16879910 16880346 -160093794 + MLT1J LTR MaLR 40 502 -9 233 67 0 0 chrX 16930944 16930974 -160043166 - U3 snRNA snRNA -175 42 13 4562 152 47 29 chrX 16930974 16931020 -160043120 + L1PB4 LINE L1 5274 5318 -838 2011 131 7 10 chrX 16931020 16931311 -160042829 + AluSx SINE Alu 3 292 -20 4562 152 47 29 chrX 16931311 16932130 -160042010 + L1PB4 LINE L1 5318 6155 -1 760 252 7 0 chrX 16932130 16932285 -160041855 - MIR SINE MIR -101 161 6 2326 179 54 7 chrX 16932688 16933095 -160041045 + MSTB LTR MaLR 1 426 0 2311 177 55 2 chrX 16933894 16934385 -160039755 - L1 LINE L1 -1377 5471 4955 * 3357 204 15 4 chrX 16934373 16934398 -160039742 - L1 LINE L1 -4360 2489 2466 234 0 0 0 chrX 16934398 16934424 -160039716 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3357 204 15 4 chrX 16934424 16935117 -160039023 - L1 LINE L1 -4383 2466 1763 * 43441 51 3 1 chrX 16935115 16941252 -160032888 - L1PA4 LINE L1 -11 6144 1 5190 236 27 22 chrX 16941257 16942416 -160031724 - L1 LINE L1 -5075 1774 610 225 0 0 0 chrX 16942432 16942457 -160031683 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2314 215 108 14 chrX 16942586 16943102 -160031038 + MLT1F1 LTR MaLR 3 567 0 21 0 0 0 chrX 16943146 16943167 -160030973 + AT_rich Low_complexity Low_complexity 1 21 0 189 367 136 7 chrX 16943646 16943793 -160030347 - L2 LINE L2 0 3272 3107 256 206 0 0 chrX 16943793 16943856 -160030284 + L1M4 LINE L1 5021 5083 -1063 4317 111 8 28 chrX 16943857 16943951 -160030189 + L1PA16 LINE L1 5395 5489 -677 2231 122 3 0 chrX 16943951 16944262 -160029878 + AluSx SINE Alu 1 312 0 4317 111 8 28 chrX 16944262 16944836 -160029304 + L1PA16 LINE L1 5489 6049 -117 578 167 0 0 chrX 16944834 16944930 -160029210 - L1M2 LINE L1 -5390 1459 1364 * 395 218 0 30 chrX 16944930 16945031 -160029109 + L1PA15 LINE L1 6059 6156 -9 771 290 50 5 chrX 16945183 16945383 -160028757 + MER63A DNA MER1_type 2 210 0 11255 162 44 14 chrX 16945764 16947651 -160026489 + L1M1 LINE L1 18 1960 -5605 2658 132 16 43 chrX 16947651 16948022 -160026118 + MSTB LTR MaLR 1 361 -65 890 138 0 0 chrX 16948022 16948158 -160025982 + FLAM_C SINE Alu 1 136 0 2658 132 16 43 chrX 16948158 16948223 -160025917 + MSTB LTR MaLR 361 426 0 9651 167 30 6 chrX 16948227 16949835 -160024305 + MSTB-int LTR MaLR 5 1651 0 2300 155 39 55 chrX 16949835 16949946 -160024194 + MSTB LTR MaLR 1 112 -314 1314 179 117 68 chrX 16949946 16950375 -160023765 - LTR7 LTR ERV1 0 450 1 2300 155 39 55 chrX 16950375 16950465 -160023675 + MSTB LTR MaLR 112 202 -224 2245 89 0 33 chrX 16950465 16950767 -160023373 + AluY SINE Alu 1 292 -19 2300 155 39 55 chrX 16950767 16950997 -160023143 + MSTB LTR MaLR 202 426 0 9182 188 38 50 chrX 16950997 16953612 -160020528 + L1M1 LINE L1 1956 4600 -2965 4171 98 7 3 chrX 16953612 16954184 -160019956 + L1PB1 LINE L1 5576 6149 -2 9182 188 38 50 chrX 16954184 16954516 -160019624 + L1M1 LINE L1 4600 4899 -2666 294 83 0 0 chrX 16954516 16954552 -160019588 + U2 snRNA snRNA 1 36 -152 9182 188 38 50 chrX 16954552 16954905 -160019235 + L1M1 LINE L1 4899 5255 -2310 7203 65 16 1 chrX 16955446 16956948 -160017192 + L1PA6 LINE L1 4627 6143 -11 412 243 108 0 chrX 16956980 16957091 -160017049 + MER63A DNA MER1_type 88 210 0 1387 230 67 12 chrX 16957091 16957434 -160016706 - L1ME LINE L1 -512 5650 5289 257 329 107 36 chrX 16957509 16957734 -160016406 + MIR SINE MIR 2 242 -20 329 278 179 47 chrX 16958195 16958407 -160015733 + L2 LINE L2 3011 3250 -22 195 100 0 0 chrX 16958572 16958602 -160015538 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 16958805 16958827 -160015313 + AT_rich Low_complexity Low_complexity 1 22 0 2395 67 0 3 chrX 16959748 16960048 -160014092 + AluSc SINE Alu 1 299 -10 225 0 0 0 chrX 16960097 16960122 -160014018 + (TA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 16960165 16960188 -160013952 + (TC)n Simple_repeat Simple_repeat 2 24 0 583 250 26 7 chrX 16960512 16960664 -160013476 + MER5B DNA MER1_type 20 174 -4 391 307 91 29 chrX 16960666 16960907 -160013233 + L2 LINE L2 2499 2754 -560 2177 81 3 11 chrX 16960999 16961313 -160012827 - AluSp SINE Alu 0 312 1 498 224 148 15 chrX 16961318 16961514 -160012626 - L1MD3 LINE L1 -8 7987 7766 479 251 20 126 chrX 16961597 16961692 -160012448 + MER5B DNA MER1_type 1 66 -112 458 254 136 73 chrX 16961692 16961869 -160012271 - MER5A DNA MER1_type -1 188 1 479 251 20 126 chrX 16961869 16961972 -160012168 + MER5B DNA MER1_type 66 178 0 571 304 133 54 chrX 16962376 16962932 -160011208 + L2 LINE L2 1367 1966 -1348 23 33 0 0 chrX 16963019 16963049 -160011091 + AT_rich Low_complexity Low_complexity 1 30 0 276 265 128 0 chrX 16963662 16963764 -160010376 + L2 LINE L2 3198 3312 -1 * 352 367 53 38 chrX 16963760 16964288 -160009852 + L2 LINE L2 1997 2532 -782 495 283 7 26 chrX 16964380 16964532 -160009608 + MER103 DNA DNA 11 159 -7 252 0 0 0 chrX 16964541 16964569 -160009571 + (T)n Simple_repeat Simple_repeat 1 28 0 3361 220 63 33 chrX 16964827 16966606 -160007534 - L1MCb LINE L1 -3529 3035 1044 1896 154 0 13 chrX 16966606 16966904 -160007236 - AluJo SINE Alu -18 294 1 3361 220 63 33 chrX 16966904 16967413 -160006727 - L1MCb LINE L1 -5520 1044 552 428 243 36 21 chrX 16967493 16967633 -160006507 - L1MCb LINE L1 -5493 552 411 380 215 87 60 chrX 16967635 16967784 -160006356 - MIR SINE MIR -108 154 2 2020 187 16 53 chrX 16967911 16968403 -160005737 + MER31A LTR ERV1 12 485 0 979 154 44 11 chrX 16968919 16969101 -160005039 + MER5A DNA MER1_type 1 188 -1 539 199 166 11 chrX 16969191 16969347 -160004793 + MER5A DNA MER1_type 6 189 0 345 332 65 8 chrX 16970279 16970460 -160003680 - MIR SINE MIR -55 207 17 552 222 170 20 chrX 16970484 16970637 -160003503 + MER5A DNA MER1_type 9 184 -5 276 323 65 32 chrX 16971560 16971653 -160002487 - L2 LINE L2 -19 3253 3158 189 0 0 0 chrX 16972295 16972316 -160001824 + (A)n Simple_repeat Simple_repeat 1 21 0 405 0 0 0 chrX 16972316 16972361 -160001779 + (TA)n Simple_repeat Simple_repeat 1 45 0 1047 261 32 11 chrX 16972379 16972659 -160001481 + LTR16C LTR ERVL 158 443 -48 237 244 122 37 chrX 16973878 16973960 -160000180 + L3 LINE CR1 1485 1573 -4 1064 113 154 36 chrX 16974489 16974684 -159999456 - MER20 DNA MER1_type -1 218 1 342 213 83 37 chrX 16974765 16974873 -159999267 - MER58C DNA MER1_type -31 184 72 304 237 0 0 chrX 16975490 16975549 -159998591 - L2 LINE L2 -8 3305 3247 294 237 93 72 chrX 16975880 16976019 -159998121 + MIR SINE MIR 3 145 -63 21 0 0 0 chrX 16977089 16977110 -159997030 + AT_rich Low_complexity Low_complexity 1 21 0 522 57 0 0 chrX 16979807 16979877 -159994263 + (CGG)n Simple_repeat Simple_repeat 2 71 0 560 278 74 47 chrX 16980665 16981123 -159993017 - L1ME LINE L1 -391 6007 5518 226 340 19 0 chrX 16981318 16981421 -159992719 - L1ME LINE L1 -1088 5294 5190 428 59 0 0 chrX 16982089 16982140 -159992000 + 5S rRNA rRNA 1 51 -70 1167 130 10 10 chrX 16982194 16982401 -159991739 + L1MA7 LINE L1 6085 6291 0 1800 215 6 18 chrX 16982454 16982789 -159991351 - MLT1H1 LTR MaLR 0 555 225 1503 288 56 10 chrX 16982815 16983251 -159990889 - L1ME LINE L1 -2654 3728 3249 2175 137 0 0 chrX 16983251 16983558 -159990582 - AluSg SINE Alu -3 307 1 1503 288 56 10 chrX 16983558 16983799 -159990341 - L1ME LINE L1 -3133 3249 3020 5991 162 15 13 chrX 16983828 16985400 -159988740 + L1MA6 LINE L1 4727 6294 -6 1383 256 78 37 chrX 16985430 16986416 -159987724 - L1ME LINE L1 -3883 2680 1496 1647 158 4 0 chrX 16986416 16986694 -159987446 - L1MA4 LINE L1 -5 6295 6017 1383 256 78 37 chrX 16986694 16986780 -159987360 - L1ME LINE L1 -5067 1496 1415 6436 140 9 21 chrX 16986805 16988044 -159986096 - L1MA2 LINE L1 0 7723 6500 19264 67 9 5 chrX 16988091 16991869 -159982271 - L1PA4 LINE L1 -5 6150 2212 3836 124 28 3 chrX 16992026 16992624 -159981516 - L1PA4 LINE L1 -5531 615 3 7288 187 22 15 chrX 16992624 16992997 -159981143 - L1MA2 LINE L1 -2359 5206 4837 2241 88 0 13 chrX 16992997 16993303 -159980837 + AluY SINE Alu 3 304 -7 7288 187 22 15 chrX 16993303 16994825 -159979315 - L1MA2 LINE L1 -2728 4837 3306 3037 242 53 53 chrX 16994825 16995981 -159978159 - L1M4 LINE L1 -4863 1679 524 388 263 69 50 chrX 16997986 16998146 -159975994 + MLT1L LTR MaLR 445 607 -8 2139 141 0 0 chrX 16999275 16999574 -159974566 - AluSx SINE Alu -13 299 1 2393 91 0 0 chrX 17000623 17000932 -159973208 - AluSg SINE Alu -1 309 1 4280 96 8 22 chrX 17001082 17001707 -159972433 - L1MA1 LINE L1 0 6302 5687 218 276 0 41 chrX 17001827 17001950 -159972190 + A-rich Low_complexity Low_complexity 1 118 0 371 302 102 25 chrX 17001952 17002187 -159971953 + L1 LINE L1 5150 5402 -744 33 0 0 0 chrX 17002359 17002392 -159971748 + AT_rich Low_complexity Low_complexity 1 33 0 33 90 0 0 chrX 17002536 17002625 -159971515 + GC_rich Low_complexity Low_complexity 1 89 0 206 247 0 41 chrX 17002760 17002833 -159971307 + C-rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chrX 17003635 17003664 -159970476 + GC_rich Low_complexity Low_complexity 1 29 0 259 320 0 0 chrX 17004110 17004185 -159969955 + GA-rich Low_complexity Low_complexity 1 75 0 382 114 44 26 chrX 17005504 17005618 -159968522 + GA-rich Low_complexity Low_complexity 2 117 0 309 165 71 0 chrX 17005779 17005864 -159968276 - L1ME4a LINE L1 -4 6117 6027 688 282 95 17 chrX 17005919 17006160 -159967980 + MIR SINE MIR 2 261 -1 2458 197 28 49 chrX 17006198 17006453 -159967687 + MER90 LTR ERV1 59 318 -296 2395 86 7 0 chrX 17006453 17006756 -159967384 + AluSq SINE Alu 1 305 -8 2458 197 28 49 chrX 17006756 17007068 -159967072 + MER90 LTR ERV1 318 614 0 618 269 73 8 chrX 17007097 17007357 -159966783 - L1ME4a LINE L1 -197 5924 5648 24 32 0 0 chrX 17008977 17009008 -159965132 + AT_rich Low_complexity Low_complexity 1 31 0 406 352 66 9 chrX 17010160 17010387 -159963753 - MIR SINE MIR -10 252 13 201 184 0 0 chrX 17010672 17010710 -159963430 - MIR3 SINE MIR -48 160 123 230 250 130 56 chrX 17011708 17011816 -159962324 - L2 LINE L2 -12 3260 3145 952 304 58 26 chrX 17012082 17012427 -159961713 + LTR16C LTR ERVL 136 491 0 229 121 0 0 chrX 17012487 17012520 -159961620 + L1MB7 LINE L1 6143 6175 -9 452 358 107 36 chrX 17012550 17012989 -159961151 - L2 LINE L2 -338 2976 2507 24 0 0 0 chrX 17015509 17015533 -159958607 + AT_rich Low_complexity Low_complexity 1 24 0 198 333 9 56 chrX 17016738 17016755 -159957385 - MIR SINE MIR -73 135 119 1148 239 71 77 chrX 17016755 17017248 -159956892 + LTR16C LTR ERVL 2 491 0 198 333 9 56 chrX 17017248 17017338 -159956802 - MIR SINE MIR -89 119 33 997 214 11 0 chrX 17018343 17018530 -159955610 + MER5A DNA MER1_type 1 189 0 979 230 49 0 chrX 17018992 17019218 -159954922 - MIR SINE MIR -22 240 4 231 174 0 0 chrX 17019451 17019494 -159954646 - MIR SINE MIR -64 144 101 396 0 0 0 chrX 17020360 17020404 -159953736 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 269 97 34 chrX 17022145 17022320 -159951820 - MIR SINE MIR -46 216 31 2314 40 40 17 chrX 17022398 17022695 -159951445 + AluY SINE Alu 1 304 -7 296 270 22 130 chrX 17022988 17023173 -159950967 + MIR3 SINE MIR 42 206 -2 252 0 0 0 chrX 17023671 17023699 -159950441 + (T)n Simple_repeat Simple_repeat 1 28 0 531 244 59 0 chrX 17023852 17023987 -159950153 + LTR16C LTR ERVL 301 443 -48 218 339 0 17 chrX 17025413 17025472 -159948668 + MIR3 SINE MIR 13 70 -138 486 337 73 44 chrX 17025668 17026012 -159948128 + L2 LINE L2 2942 3295 -18 1106 254 32 44 chrX 17026406 17026744 -159947396 + LTR16C LTR ERVL 158 491 0 193 254 109 0 chrX 17026763 17026818 -159947322 + MIR SINE MIR 120 180 -82 441 165 13 13 chrX 17026853 17026932 -159947208 - MER116 DNA Mariner 0 80 2 794 225 13 53 chrX 17027681 17027908 -159946232 + MIR SINE MIR 34 251 -11 643 311 24 5 chrX 17028302 17028508 -159945632 - MIR SINE MIR -6 256 47 321 171 92 13 chrX 17028896 17028972 -159945168 - AluSp/q SINE Alu -3 300 219 2062 104 0 4 chrX 17029086 17029356 -159944784 - AluSq SINE Alu -44 269 1 463 200 61 17 chrX 17029541 17029656 -159944484 + L2 LINE L2 3189 3308 -5 22 56 0 0 chrX 17029980 17030016 -159944124 + AT_rich Low_complexity Low_complexity 1 36 0 647 206 56 0 chrX 17030108 17030234 -159943906 + MER94 DNA DNA 1 133 -1 221 328 90 0 chrX 17030914 17031036 -159943104 - L2 LINE L2 0 3313 3181 288 0 0 0 chrX 17031183 17031215 -159942925 + (TG)n Simple_repeat Simple_repeat 2 33 0 359 347 49 60 chrX 17031648 17032151 -159941989 - L2 LINE L2 -189 3083 2574 1600 242 88 13 chrX 17032455 17032910 -159941230 + LTR16C LTR ERVL 1 489 -2 396 0 0 0 chrX 17033896 17033940 -159940200 + (TG)n Simple_repeat Simple_repeat 2 45 0 2199 228 31 23 chrX 17033952 17034538 -159939602 - L1ME3 LINE L1 -5 6157 5560 * 11164 124 24 21 chrX 17034526 17036309 -159937831 + L1P LINE L1 11 1798 -4348 1734 69 0 30 chrX 17036413 17036645 -159937495 - L1M1 LINE L1 -591 5711 5487 505 226 0 0 chrX 17038264 17038348 -159935792 - MER63 DNA MER1_type 0 1061 978 1172 271 92 45 chrX 17038816 17039285 -159934855 + LTR16C LTR ERVL 1 491 0 25651 65 121 4 chrX 17039788 17042611 -159931529 - L1P LINE L1 -1488 4658 1327 2833 16 0 0 chrX 17042611 17042922 -159931218 + AluY SINE Alu 1 311 0 25651 65 121 4 chrX 17042922 17043676 -159930464 - L1P LINE L1 -4819 1327 663 1114 181 0 15 chrX 17043789 17043994 -159930146 - L1M4 LINE L1 -451 5733 5532 2827 129 0 63 chrX 17045561 17046049 -159928091 - MLT1C LTR MaLR 0 467 11 228 317 98 30 chrX 17047434 17047598 -159926542 - MER5B DNA MER1_type 0 178 4 220 322 119 34 chrX 17047982 17048100 -159926040 + L2 LINE L2 3129 3256 -16 5592 106 25 5 chrX 17048124 17048914 -159925226 - L1MA3 LINE L1 -4 6301 5496 2376 169 4 4 chrX 17048921 17049377 -159924763 - L1MA3 LINE L1 -1467 4679 4224 227 292 26 35 chrX 17049595 17049708 -159924432 + MIR SINE MIR 54 165 -97 746 209 43 12 chrX 17050538 17050701 -159923439 + MER5A DNA MER1_type 16 183 -6 1768 169 3 17 chrX 17050814 17051116 -159923024 + AluJo SINE Alu 6 303 -9 29 0 0 0 chrX 17052982 17053011 -159921129 + AT_rich Low_complexity Low_complexity 1 29 0 1591 180 27 20 chrX 17053147 17053442 -159920698 + AluJo SINE Alu 1 297 -15 330 26 0 0 chrX 17054366 17054405 -159919735 + (CA)n Simple_repeat Simple_repeat 1 39 0 223 88 18 53 chrX 17054824 17054881 -159919259 + (CCCCCA)n Simple_repeat Simple_repeat 1 55 0 192 40 0 0 chrX 17056173 17056198 -159917942 + (GA)n Simple_repeat Simple_repeat 1 25 0 404 322 20 0 chrX 17056846 17056998 -159917142 + (TATG)n Simple_repeat Simple_repeat 4 158 0 2142 70 37 0 chrX 17057319 17057438 -159916702 + AluY SINE Alu 2 115 -201 315 0 0 0 chrX 17057438 17057473 -159916667 + (CA)n Simple_repeat Simple_repeat 2 36 0 2142 70 37 0 chrX 17057473 17057658 -159916482 + AluY SINE Alu 115 316 0 2109 91 21 11 chrX 17058009 17058296 -159915844 - AluSc SINE Alu -19 290 1 254 106 21 0 chrX 17058801 17058848 -159915292 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 296 329 103 34 chrX 17059190 17059336 -159914804 + MIR3 SINE MIR 2 157 -51 267 292 148 68 chrX 17060080 17060316 -159913824 - L3 LINE CR1 -60 1517 1263 437 244 25 42 chrX 17060380 17060499 -159913641 + L2 LINE L2 3189 3305 -8 310 106 0 0 chrX 17060510 17060557 -159913583 - MIR SINE MIR -105 157 111 223 168 0 109 chrX 17060924 17061025 -159913115 + A-rich Low_complexity Low_complexity 2 91 0 22 56 0 0 chrX 17061642 17061678 -159912462 + AT_rich Low_complexity Low_complexity 1 36 0 305 289 21 31 chrX 17062576 17062673 -159911467 + MIR3 SINE MIR 79 174 -34 441 36 0 0 chrX 17064044 17064099 -159910041 + (TG)n Simple_repeat Simple_repeat 1 55 0 201 74 0 0 chrX 17064166 17064193 -159909947 + (T)n Simple_repeat Simple_repeat 1 27 0 856 182 0 0 chrX 17066287 17066462 -159907678 + FLAM_C SINE Alu 2 176 0 1050 159 0 0 chrX 17066472 17066635 -159907505 + FRAM SINE Alu 1 160 -16 192 40 0 0 chrX 17068266 17068291 -159905849 + (T)n Simple_repeat Simple_repeat 1 25 0 2193 103 0 13 chrX 17069776 17070076 -159904064 - AluSx SINE Alu -16 296 1 253 287 148 9 chrX 17072858 17072973 -159901167 - L2 LINE L2 -6 3307 3177 237 283 69 123 chrX 17072976 17073252 -159900888 - L2 LINE L2 -1 3271 3011 302 272 124 63 chrX 17073710 17074089 -159900051 - MLT1J LTR MaLR 0 511 110 186 143 0 0 chrX 17074162 17074197 -159899943 + (TG)n Simple_repeat Simple_repeat 2 36 0 2448 64 7 3 chrX 17075004 17075302 -159898838 + AluSp SINE Alu 1 299 -14 1900 60 21 0 chrX 17075444 17075679 -159898461 - L1MA1 LINE L1 -8 6294 6055 2266 199 31 8 chrX 17075950 17076432 -159897708 - Charlie4a DNA MER1_type 0 508 16 913 292 94 45 chrX 17077205 17077673 -159896467 - L2 LINE L2 -219 3094 2577 1920 166 61 33 chrX 17077673 17078034 -159896106 - MLT1A2 LTR MaLR 0 374 4 913 292 94 45 chrX 17078034 17078165 -159895975 - L2 LINE L2 -736 2577 2454 212 316 146 28 chrX 17078403 17078615 -159895525 + MIR SINE MIR 12 248 -14 2267 98 0 10 chrX 17078631 17078975 -159895165 - AluSx SINE Alu 0 312 1 285 263 115 21 chrX 17079082 17079205 -159894935 - MER5B DNA MER1_type -3 175 61 887 122 64 6 chrX 17079207 17079363 -159894777 - Charlie1 DNA MER1_type -178 2583 2419 292 209 0 15 chrX 17079384 17079451 -159894689 + MER5B DNA MER1_type 113 178 0 235 278 0 0 chrX 17079591 17079645 -159894495 - MIR SINE MIR -3 259 206 435 227 209 0 chrX 17079880 17079990 -159894150 + L2 LINE L2 3134 3266 -6 2174 113 10 3 chrX 17080634 17080935 -159893205 + AluSx SINE Alu 1 303 -9 1500 275 15 10 chrX 17080999 17081388 -159892752 - LTR16C LTR ERVL -10 481 91 2355 135 0 6 chrX 17083176 17083532 -159890608 - MER47A DNA MER2_type 0 366 13 558 256 161 22 chrX 17083769 17084043 -159890097 - LTR50 LTR ERVL 0 795 484 502 195 55 47 chrX 17084269 17084397 -159889743 - LTR50 LTR ERVL -650 145 17 2405 74 0 0 chrX 17084680 17084976 -159889164 - AluSx SINE Alu -16 296 1 187 345 138 14 chrX 17086239 17086384 -159887756 + L2 LINE L2 3102 3264 -8 * 280 259 58 58 chrX 17086358 17086497 -159887643 + MIR SINE MIR 114 252 -10 252 200 178 33 chrX 17086903 17086993 -159887147 + L2 LINE L2 3169 3271 -42 866 300 29 47 chrX 17086997 17087380 -159886760 + MLT1H LTR MaLR 3 378 -171 193 176 0 0 chrX 17087515 17087549 -159886591 + L2 LINE L2 3280 3313 0 195 347 0 14 chrX 17087635 17087707 -159886433 + MIR3 SINE MIR 3 73 -135 431 320 37 33 chrX 17088818 17089062 -159885078 + MIR SINE MIR 6 250 -12 44 35 0 0 chrX 17090643 17090701 -159883439 + AT_rich Low_complexity Low_complexity 1 58 0 2271 101 0 3 chrX 17090935 17091233 -159882907 - AluSg SINE Alu -13 297 1 185 128 0 26 chrX 17092575 17092614 -159881526 + (TTA)n Simple_repeat Simple_repeat 1 38 0 183 42 0 0 chrX 17092785 17092809 -159881331 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 622 263 41 18 chrX 17093314 17093485 -159880655 - MLT1J2 LTR MaLR 0 450 276 550 195 172 8 chrX 17093481 17093609 -159880531 - MLT1J2 LTR MaLR -296 154 6 * 212 339 0 0 chrX 17094054 17094116 -159880024 + L3 LINE CR1 1115 1176 -401 * 814 284 159 29 chrX 17094112 17094685 -159879455 - L2 LINE L2 -2 3311 2647 555 268 181 45 chrX 17094987 17095323 -159878817 + MLT1J LTR MaLR 111 492 -19 244 285 76 35 chrX 17095457 17095601 -159878539 + L2 LINE L2 3042 3191 -122 350 219 24 0 chrX 17096258 17096340 -159877800 - MLT1H1 LTR MaLR -2 553 470 234 304 0 0 chrX 17096352 17096421 -159877719 + MIR SINE MIR 186 254 -8 213 39 0 0 chrX 17096788 17096814 -159877326 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 387 115 10 83 chrX 17097641 17097737 -159876403 + Charlie7 DNA MER1_type 45 133 -2479 354 114 267 48 chrX 17097744 17097849 -159876291 + MER53 DNA DNA 1 128 -61 817 206 82 113 chrX 17098001 17098462 -159875678 + Charlie7 DNA MER1_type 2166 2612 0 2385 93 0 3 chrX 17098545 17098846 -159875294 - AluSx SINE Alu -12 300 1 719 213 101 11 chrX 17100352 17100540 -159873600 + MER3 DNA MER1_type 5 209 0 460 327 57 65 chrX 17101310 17101707 -159872433 - L2 LINE L2 -1 3312 2900 2344 70 0 0 chrX 17101707 17102014 -159872126 - AluSx SINE Alu 0 307 1 460 327 57 65 chrX 17102014 17102247 -159871893 - L2 LINE L2 -413 2900 2667 269 316 117 54 chrX 17102879 17103195 -159870945 + L2 LINE L2 2937 3272 0 865 223 148 13 chrX 17103430 17103659 -159870481 + MIR SINE MIR 3 262 0 2176 228 67 13 chrX 17104082 17104634 -159869506 - L1ME3A LINE L1 -1 6169 5588 278 246 0 0 chrX 17104641 17104698 -159869442 + MER5B DNA MER1_type 122 178 0 515 231 253 11 chrX 17105370 17105552 -159868588 + MIR SINE MIR 37 262 0 298 349 60 0 chrX 17106234 17106383 -159867757 - MIR SINE MIR -11 251 94 296 330 11 0 chrX 17107100 17107188 -159866952 - L2 LINE L2 0 3313 3225 256 224 53 40 chrX 17107407 17107483 -159866657 + MER5B DNA MER1_type 2 78 -100 641 207 72 42 chrX 17107995 17108188 -159865952 + MIR SINE MIR 64 262 0 296 272 11 11 chrX 17108440 17108532 -159865608 + MER5A DNA MER1_type 3 94 -95 3493 185 88 111 chrX 17109928 17110309 -159863831 - L1MD2 LINE L1 -2 6357 5969 543 160 0 53 chrX 17110309 17110403 -159863737 + FLAM SINE Alu 39 127 -16 3493 185 88 111 chrX 17110403 17111024 -159863116 - L1MD2 LINE L1 -390 5969 5287 3215 171 21 5 chrX 17111024 17111607 -159862533 - L1MB4 LINE L1 0 6180 5589 1484 170 34 19 chrX 17111607 17112047 -159862093 + L1MB7 LINE L1 5082 5528 -650 448 183 0 11 chrX 17112046 17112153 -159861987 - L1MD2 LINE L1 -845 5301 5204 * 6109 97 3 9 chrX 17112168 17113026 -159861114 - L1PA14 LINE L1 -7 6154 5302 892 211 11 22 chrX 17115820 17116005 -159858135 - MER5A DNA MER1_type -6 183 1 402 284 177 0 chrX 17116889 17117030 -159857110 + MER5A DNA MER1_type 9 174 -15 414 0 0 0 chrX 17117699 17117745 -159856395 + (TG)n Simple_repeat Simple_repeat 1 46 0 621 226 14 104 chrX 17117976 17118197 -159855943 - MER102b DNA MER1_type -8 333 133 358 234 194 0 chrX 17120771 17120895 -159853245 + L1ME4a LINE L1 5795 5942 -179 788 188 17 17 chrX 17121634 17121815 -159852325 - MER53 DNA DNA 0 189 9 505 176 19 0 chrX 17122100 17122208 -159851932 - L1MB8 LINE L1 -2 6176 6067 1332 247 22 6 chrX 17122494 17122859 -159851281 + L1MB7 LINE L1 5726 6096 -88 264 316 147 7 chrX 17123112 17123248 -159850892 + MIR SINE MIR 56 210 -52 345 241 154 36 chrX 17124682 17124854 -159849286 + L1ME LINE L1 2418 2617 -3923 1484 162 120 0 chrX 17124854 17125163 -159848977 + MER7A DNA MER2_type 1 344 -2 345 241 154 36 chrX 17125163 17125185 -159848955 + L1ME LINE L1 2617 2635 -3905 227 284 98 48 chrX 17125772 17126191 -159847949 + L1ME LINE L1 4464 4903 -1637 397 290 117 51 chrX 17126379 17126661 -159847479 + L1ME LINE L1 5144 5406 -1152 2038 126 10 10 chrX 17126661 17126955 -159847185 - AluSx SINE Alu -18 294 1 397 290 117 51 chrX 17126955 17127611 -159846529 + L1ME LINE L1 5406 6157 -401 2226 72 61 3 chrX 17127611 17127904 -159846236 + AluSx SINE Alu 1 310 -2 397 290 117 51 chrX 17127904 17127969 -159846171 + L1ME LINE L1 6157 6216 -342 21 0 0 0 chrX 17129010 17129031 -159845109 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 17129413 17129436 -159844704 + AT_rich Low_complexity Low_complexity 1 23 0 33 43 0 0 chrX 17129531 17129578 -159844562 + AT_rich Low_complexity Low_complexity 1 47 0 264 176 78 0 chrX 17130166 17130217 -159843923 - LTR40a LTR ERVL -365 154 100 243 299 26 26 chrX 17130220 17130337 -159843803 - MER96 DNA MER1_type? -5 170 54 1053 163 22 0 chrX 17130337 17130515 -159843625 - AluJo SINE Alu -9 303 122 22859 161 19 19 chrX 17130518 17134177 -159839963 - L1PA11 LINE L1 -5 7607 3947 2251 109 10 6 chrX 17134177 17134489 -159839651 - AluSq SINE Alu 0 313 1 22859 161 19 19 chrX 17134489 17136943 -159837197 - L1PA11 LINE L1 -3665 3947 143 284 214 0 0 chrX 17136952 17137008 -159837132 + MER96 DNA MER1_type? 120 175 0 * 320 253 152 0 chrX 17137008 17137100 -159837040 - LTR40a LTR ERVL -411 108 2 494 194 0 0 chrX 17137234 17137327 -159836813 + L1ME1 LINE L1 5611 5703 -463 3530 131 5 8 chrX 17137344 17137940 -159836200 - L1MA6 LINE L1 0 6300 5707 1289 146 11 60 chrX 17137940 17138221 -159835919 - L1MA7 LINE L1 -243 6048 5782 537 121 0 0 chrX 17138223 17138306 -159835834 + (TG)n Simple_repeat Simple_repeat 2 84 0 4719 158 18 5 chrX 17138309 17139611 -159834529 - L1MA7 LINE L1 -498 5793 4472 637 201 50 92 chrX 17139611 17139914 -159834226 + L1ME1 LINE L1 5697 5986 -180 605 209 7 20 chrX 17139914 17140067 -159834073 + L1MA10 LINE L1 6181 6331 -3 230 254 136 27 chrX 17141414 17141524 -159832616 - MLT1L LTR MaLR -326 289 168 545 248 93 50 chrX 17141784 17142129 -159832011 + MLT1H LTR MaLR 104 542 -13 283 292 34 11 chrX 17142414 17142503 -159831637 + L2 LINE L2 3223 3313 0 2539 140 19 9 chrX 17142682 17143110 -159831030 + MSTB1 LTR MaLR 1 432 0 268 281 83 16 chrX 17144059 17144251 -159829889 + MLT1I LTR MaLR 50 133 -276 321 268 21 31 chrX 17144615 17144712 -159829428 - MIR SINE MIR -38 224 129 1530 162 3 54 chrX 17144712 17145076 -159829064 - MER4A LTR ERV1 0 664 261 536 152 0 10 chrX 17145076 17145175 -159828965 - MER4A LTR ERV1 -566 98 1 15108 95 45 25 chrX 17145180 17145474 -159828666 - MER4A-int LTR ERV1 -1 6597 6310 2053 108 45 0 chrX 17145474 17145761 -159828379 + AluSg SINE Alu 1 300 -10 15108 95 45 25 chrX 17145761 17148002 -159826138 - MER4A-int LTR ERV1 -288 6310 4012 219 36 0 0 chrX 17148002 17148030 -159826110 + (T)n Simple_repeat Simple_repeat 1 28 0 40987 31 21 1 chrX 17148031 17154061 -159820079 - L1HS LINE L1 0 6155 1 951 108 38 16 chrX 17154061 17154247 -159819893 - MER4A-int LTR ERV1 -2572 4026 3837 * 6746 95 153 111 chrX 17154246 17155477 -159818663 - MER4A-int LTR ERV1 -2917 3681 2503 2050 82 4 8 chrX 17155477 17155745 -159818395 - AluSp SINE Alu 0 313 47 6746 95 153 111 chrX 17155745 17156589 -159817551 - MER4A-int LTR ERV1 -4095 2503 1696 2367 49 0 3 chrX 17156589 17156920 -159817220 + AluY SINE Alu 1 330 0 6746 95 153 111 chrX 17156920 17158113 -159816027 - MER4A-int LTR ERV1 -4902 1696 2 1308 143 0 9 chrX 17158117 17158327 -159815813 - MER4A LTR ERV1 0 664 457 378 342 53 16 chrX 17158840 17159030 -159815110 + MIR SINE MIR 28 224 -38 2391 143 19 21 chrX 17159453 17159778 -159814362 - MSTB LTR MaLR -1 425 100 2348 119 11 3 chrX 17159778 17160139 -159814001 - THE1B LTR MaLR 0 364 1 2391 143 19 21 chrX 17160139 17160239 -159813901 - MSTB LTR MaLR -326 100 1 423 260 142 18 chrX 17160254 17160423 -159813717 + MIR SINE MIR 12 201 -61 268 261 14 14 chrX 17161561 17161630 -159812510 + L2 LINE L2 3223 3291 -22 357 24 0 0 chrX 17161646 17161688 -159812452 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 387 244 144 112 chrX 17163119 17163521 -159810619 - MLT1H LTR MaLR -127 422 8 218 302 52 9 chrX 17163656 17163772 -159810368 + CT-rich Low_complexity Low_complexity 4 124 0 227 263 92 13 chrX 17164891 17164967 -159809173 + MIR SINE MIR 104 185 -77 2451 84 0 0 chrX 17165234 17165543 -159808597 + AluSg SINE Alu 1 309 -1 297 0 0 0 chrX 17166099 17166132 -159808008 + (TTA)n Simple_repeat Simple_repeat 2 34 0 861 213 50 20 chrX 17166307 17166509 -159807631 - MER3 DNA MER1_type 0 209 2 744 186 90 34 chrX 17167112 17167289 -159806851 + MER5A DNA MER1_type 3 189 0 366 23 0 0 chrX 17167335 17167378 -159806762 + (TG)n Simple_repeat Simple_repeat 2 44 0 2295 102 3 0 chrX 17167428 17167733 -159806407 + AluSg SINE Alu 1 306 -4 511 255 56 6 chrX 17168696 17168857 -159805283 - MIR SINE MIR -13 249 81 604 217 173 48 chrX 17168990 17169239 -159804901 - MLT1J2 LTR MaLR -132 318 39 1346 106 111 4 chrX 17169288 17169523 -159804617 + THE1C LTR MaLR 116 375 0 2478 74 3 0 chrX 17170483 17170782 -159803358 - AluSp SINE Alu -13 300 1 15089 128 23 8 chrX 17170811 17173192 -159800948 + Tigger1 DNA MER2_type 1 2418 0 375 250 73 55 chrX 17175455 17175619 -159798521 + LTR33 LTR ERVL 14 180 -341 373 277 50 25 chrX 17175944 17176063 -159798077 - L2 LINE L2 0 3272 3151 1514 196 95 17 chrX 17176746 17177093 -159797047 - MLT1A2 LTR MaLR 0 374 1 679 308 43 24 chrX 17177354 17177682 -159796458 + LTR16C LTR ERVL 158 491 0 7277 43 0 5 chrX 17177818 17178796 -159795344 - L1PA8 LINE L1 -2 6170 5198 676 244 36 6 chrX 17178941 17179109 -159795031 - MER5B DNA MER1_type 0 178 6 631 174 29 51 chrX 17179120 17179258 -159794882 + MER58 DNA MER1_type 2 136 -205 1211 304 9 12 chrX 17181100 17181521 -159792619 + LTR16A LTR ERVL 25 444 -6 374 291 199 7 chrX 17181576 17181717 -159792423 - MIR SINE MIR -93 169 2 414 301 85 60 chrX 17183093 17183432 -159790708 - L2 LINE L2 -6 3307 2881 4805 99 18 15 chrX 17183518 17184237 -159789903 - L1PA10 LINE L1 -1 6167 5447 780 152 51 7 chrX 17184388 17184526 -159789614 - MER46A DNA MER2_type 0 236 93 619 198 76 13 chrX 17184726 17184754 -159789386 - MER5B DNA MER1_type -3 175 150 1837 159 0 23 chrX 17184754 17185056 -159789084 - AluJo SINE Alu -17 295 1 619 198 76 13 chrX 17185056 17185184 -159788956 - MER5B DNA MER1_type -28 150 9 895 305 30 3 chrX 17185883 17186217 -159787923 - LTR16C LTR ERVL -60 431 89 213 178 0 0 chrX 17188045 17188090 -159786050 + T-rich Low_complexity Low_complexity 1 45 0 7615 28 3 0 chrX 17188090 17189227 -159784913 - L1PA4 LINE L1 0 6155 5019 716 195 95 0 chrX 17189840 17190009 -159784131 - MER53 DNA DNA -3 186 2 316 284 30 45 chrX 17190319 17190453 -159783687 + MIR SINE MIR 116 247 -15 189 139 0 0 chrX 17190469 17190512 -159783628 + (CAT)n Simple_repeat Simple_repeat 2 44 0 338 171 85 24 chrX 17191094 17191176 -159782964 - L1MD3 LINE L1 -8 7987 7901 189 0 0 0 chrX 17192353 17192374 -159781766 + (A)n Simple_repeat Simple_repeat 1 21 0 1070 277 0 36 chrX 17192391 17192720 -159781420 - MER102a DNA MER1_type -5 325 9 2567 49 0 3 chrX 17192974 17193279 -159780861 - AluY SINE Alu -7 304 1 342 0 0 0 chrX 17193491 17193529 -159780611 + (CA)n Simple_repeat Simple_repeat 2 39 0 1517 177 7 26 chrX 17193613 17193884 -159780256 + AluJo SINE Alu 12 277 -35 401 227 20 107 chrX 17194306 17194456 -159779684 - MIR SINE MIR -75 187 51 678 155 139 16 chrX 17195658 17195821 -159778319 + MER5A DNA MER1_type 4 189 0 237 356 0 0 chrX 17195841 17195914 -159778226 + L2 LINE L2 3227 3299 -14 732 189 31 105 chrX 17196023 17196086 -159778054 - MER5B DNA MER1_type -1 177 111 1962 106 16 10 chrX 17196086 17196398 -159777742 - L1MA3 LINE L1 0 6305 5992 732 189 31 105 chrX 17196398 17196525 -159777615 - MER5B DNA MER1_type -67 111 1 423 262 10 0 chrX 17197794 17197897 -159776243 - MLT1J LTR MaLR -315 196 93 345 24 0 0 chrX 17197909 17197951 -159776189 + (TG)n Simple_repeat Simple_repeat 1 42 0 812 281 58 11 chrX 17197976 17198254 -159775886 - LTR16C LTR ERVL -200 291 1 23 0 0 0 chrX 17198600 17198623 -159775517 + AT_rich Low_complexity Low_complexity 1 23 0 2560 43 0 0 chrX 17198824 17199129 -159775011 - AluY SINE Alu -3 308 4 279 0 0 0 chrX 17200180 17200211 -159773929 + (TG)n Simple_repeat Simple_repeat 2 32 0 215 137 59 0 chrX 17200425 17200476 -159773664 + (TA)n Simple_repeat Simple_repeat 1 54 0 1221 135 0 0 chrX 17200478 17200685 -159773455 - L1M4 LINE L1 -383 5791 5585 934 194 0 16 chrX 17200998 17201184 -159772956 - MER20 DNA MER1_type -6 213 31 366 283 137 58 chrX 17201216 17201580 -159772560 - MLT1J LTR MaLR -110 401 9 2547 68 0 0 chrX 17201800 17202108 -159772032 + AluSx SINE Alu 1 308 -4 180 47 47 47 chrX 17202651 17202694 -159771446 + (TATAA)n Simple_repeat Simple_repeat 1 43 0 1715 201 28 63 chrX 17202709 17203182 -159770958 + MLT1C LTR MaLR 10 465 -2 183 167 0 0 chrX 17203964 17204006 -159770134 + A-rich Low_complexity Low_complexity 3 44 0 3149 105 11 4 chrX 17204416 17204883 -159769257 + L1PA13 LINE L1 5690 6159 -4 1052 316 204 26 chrX 17204996 17205839 -159768301 - L3 LINE CR1 -104 1473 481 930 167 118 20 chrX 17205884 17206088 -159768052 + MER58A DNA MER1_type 1 224 0 3009 267 138 33 chrX 17206095 17207518 -159766622 + L2 LINE L2 1588 3155 -158 383 287 164 27 chrX 17207552 17208255 -159765885 + L1M4 LINE L1 2334 3132 -3014 5107 128 14 75 chrX 17208276 17209377 -159764763 - L1MA8 LINE L1 -4 6287 5254 2234 188 7 0 chrX 17209390 17209843 -159764297 + L1 LINE L1 4758 5213 -933 323 271 64 28 chrX 17209826 17210184 -159763956 + L1M4 LINE L1 3122 3492 -2654 * 1564 227 163 2 chrX 17211546 17212005 -159762135 - MLT1H LTR MaLR -10 539 7 25 31 0 0 chrX 17212892 17212924 -159761216 + AT_rich Low_complexity Low_complexity 1 32 0 2014 102 42 3 chrX 17212935 17213219 -159760921 + AluSx SINE Alu 1 295 -17 603 66 0 0 chrX 17213242 17213318 -159760822 - AluS SINE Alu -237 76 1 392 313 20 40 chrX 17213376 17213615 -159760525 + MIR SINE MIR 23 258 -4 251 299 52 0 chrX 17214093 17214170 -159759970 + L2 LINE L2 2412 2492 -822 226 352 0 0 chrX 17214326 17214414 -159759726 - MER117 DNA MER1_type -37 160 73 367 257 50 0 chrX 17214861 17214962 -159759178 - MLT1J2 LTR MaLR 0 450 345 27 0 0 0 chrX 17215119 17215146 -159758994 + AT_rich Low_complexity Low_complexity 1 27 0 390 153 0 0 chrX 17215346 17215418 -159758722 - L1PA16 LINE L1 0 6166 6095 435 335 53 31 chrX 17215577 17215896 -159758244 + L1M4 LINE L1 4896 5221 -925 2259 123 22 30 chrX 17217327 17217483 -159756657 + THE1B LTR MaLR 1 157 -207 2516 53 0 3 chrX 17217483 17217784 -159756356 - AluY SINE Alu -11 300 1 2259 123 22 30 chrX 17217784 17217994 -159756146 + THE1B LTR MaLR 157 364 0 228 35 0 0 chrX 17219302 17219331 -159754809 + (TC)n Simple_repeat Simple_repeat 2 30 0 2176 109 13 0 chrX 17219331 17219633 -159754507 - AluSx SINE Alu -6 306 1 314 230 123 35 chrX 17221328 17221477 -159752663 - MLT1L LTR MaLR -342 246 84 1965 177 53 19 chrX 17221514 17221926 -159752214 - MSTB LTR MaLR 0 426 1 245 280 104 40 chrX 17222777 17222902 -159751238 - MIR SINE MIR -63 199 67 375 257 82 98 chrX 17223351 17223534 -159750606 + MIR SINE MIR 32 211 -51 345 214 83 88 chrX 17224382 17224574 -159749566 - L1ME4a LINE L1 -180 5941 5751 2440 71 0 10 chrX 17225730 17226041 -159748099 + AluY SINE Alu 1 308 -3 300 27 0 0 chrX 17226095 17226132 -159748008 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 447 19 0 0 chrX 17226131 17226183 -159747957 + (GA)n Simple_repeat Simple_repeat 2 53 0 188 100 25 0 chrX 17226443 17226483 -159747657 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 226 312 11 32 chrX 17226603 17226696 -159747444 + L2 LINE L2 3223 3313 0 533 299 55 30 chrX 17227190 17227461 -159746679 + L2 LINE L2 2236 2513 -801 273 347 10 0 chrX 17227577 17227675 -159746465 + L2 LINE L2 3161 3259 -13 736 325 144 47 chrX 17228308 17228712 -159745428 + L2 LINE L2 925 1288 -2026 216 0 0 0 chrX 17228712 17228736 -159745404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 736 325 144 47 chrX 17228736 17228861 -159745279 + L2 LINE L2 1288 1399 -1915 708 172 0 52 chrX 17228861 17228995 -159745145 - FLAM_A SINE Alu -6 127 1 736 325 144 47 chrX 17228995 17229607 -159744533 + L2 LINE L2 1399 2180 -1134 606 198 108 25 chrX 17229607 17229764 -159744376 + MER5B DNA MER1_type 3 172 -6 601 335 123 17 chrX 17229811 17230217 -159743923 + L2 LINE L2 2205 2653 -661 306 264 16 25 chrX 17230357 17230478 -159743662 - LTR67 LTR ERVL 0 557 438 457 246 17 0 chrX 17230620 17230738 -159743402 + MER94 DNA DNA 15 134 0 900 200 12 0 chrX 17230740 17230905 -159743235 + MLT1F LTR MaLR 361 527 -15 184 303 45 15 chrX 17230944 17231010 -159743130 + L2 LINE L2 3141 3208 -64 2238 118 3 0 chrX 17232398 17232702 -159741438 - AluSx SINE Alu -7 305 1 2349 80 6 13 chrX 17233069 17233382 -159740758 + AluY SINE Alu 1 311 0 2277 112 0 0 chrX 17234072 17234377 -159739763 + AluSc SINE Alu 1 305 -4 2234 78 3 20 chrX 17234607 17234782 -159739358 + AluSx SINE Alu 2 172 -140 1213 139 90 145 chrX 17234782 17235056 -159739084 - LTR7 LTR ERV1 0 450 211 2594 58 3 0 chrX 17235056 17235365 -159738775 + AluY SINE Alu 1 310 -1 1213 139 90 145 chrX 17235365 17235566 -159738574 - LTR7 LTR ERV1 -239 211 1 2234 78 3 20 chrX 17235566 17235684 -159738456 + AluSx SINE Alu 172 290 -22 620 254 51 0 chrX 17235684 17235822 -159738318 + MIR SINE MIR 22 166 -96 370 119 0 0 chrX 17235828 17235887 -159738253 + Alu SINE Alu 234 292 -8 329 229 12 12 chrX 17236110 17236193 -159737947 + MIR SINE MIR 162 244 -18 2258 107 0 13 chrX 17237420 17237730 -159736410 + AluSx SINE Alu 1 306 -6 2469 76 0 0 chrX 17238490 17238791 -159735349 - AluY SINE Alu -10 301 1 348 350 17 8 chrX 17238841 17239081 -159735059 - L1M3 LINE L1 -361 5810 5569 874 246 58 15 chrX 17239145 17239447 -159734693 + MLT1G LTR MaLR 1 272 -318 481 228 17 30 chrX 17239506 17239671 -159734469 + MLT1H1 LTR MaLR 420 553 -2 294 241 131 28 chrX 17239678 17239823 -159734317 - L1M3 LINE L1 -2331 5477 5318 1086 293 68 23 chrX 17239847 17240883 -159733257 - L1M3 LINE L1 -868 5278 4182 433 152 11 11 chrX 17242037 17242129 -159732011 + GA-rich Low_complexity Low_complexity 1 92 0 1118 221 102 48 chrX 17242348 17242382 -159731758 + Charlie7 DNA MER1_type 1862 1893 -719 1988 55 47 12 chrX 17242382 17242638 -159731502 - AluY SINE Alu -3 308 44 1118 221 102 48 chrX 17242638 17243283 -159730857 + Charlie7 DNA MER1_type 1893 2577 -35 463 197 7 117 chrX 17243292 17243362 -159730778 + L2 LINE L2 3192 3241 -72 913 263 0 13 chrX 17243362 17243586 -159730554 + MER58A DNA MER1_type 1 221 -3 463 197 7 117 chrX 17243586 17243652 -159730488 + L2 LINE L2 3241 3313 0 3559 158 80 74 chrX 17243748 17243971 -159730169 - L1MA9 LINE L1 0 6312 6092 1838 124 103 0 chrX 17243971 17244253 -159729887 + AluSx SINE Alu 1 311 -1 3559 158 80 74 chrX 17244253 17245287 -159728853 - L1MA9 LINE L1 -220 6092 5041 10566 150 23 44 chrX 17246346 17248380 -159725760 - Ricksha_c DNA DNA 0 2046 55 248 282 0 51 chrX 17249156 17249234 -159724906 - L2 LINE L2 -1 3312 3239 222 266 32 32 chrX 17249445 17249539 -159724601 + L3 LINE CR1 1478 1571 -6 2260 81 10 3 chrX 17249669 17249964 -159724176 - AluSp SINE Alu -16 297 1 236 208 0 21 chrX 17251752 17251800 -159722340 - LTR16C LTR ERVL -4 487 441 1553 265 152 4 chrX 17251801 17252315 -159721825 - MLT1G1 LTR MaLR 0 595 6 908 345 28 0 chrX 17252320 17252682 -159721458 - LTR16C LTR ERVL -47 444 73 1354 194 28 95 chrX 17253096 17253487 -159720653 + MLT1A1 LTR MaLR 1 365 0 338 302 26 0 chrX 17253524 17253640 -159720500 + MIR SINE MIR 78 196 -66 180 176 0 0 chrX 17254599 17254633 -159719507 + T-rich Low_complexity Low_complexity 1 34 0 972 249 39 28 chrX 17254715 17255149 -159718991 - MLT1H1 LTR MaLR -75 480 1 828 296 31 4 chrX 17255257 17255483 -159718657 + MIR SINE MIR 11 242 -20 2203 106 0 0 chrX 17256094 17256417 -159717723 + AluSx SINE Alu 1 323 0 207 326 43 43 chrX 17257469 17257610 -159716530 - MIR SINE MIR -66 196 56 475 292 96 14 chrX 17258642 17258861 -159715279 - MLT1J LTR MaLR -37 474 238 228 183 100 17 chrX 17259063 17259123 -159715017 - MLT1L LTR MaLR -549 66 2 2162 91 0 3 chrX 17259343 17259656 -159714484 - AluSq SINE Alu 0 312 1 461 280 17 2 chrX 17259841 17259975 -159714165 - MIR SINE MIR -63 145 20 2113 107 47 0 chrX 17259997 17260295 -159713845 - AluSq SINE Alu 0 313 2 328 299 62 10 chrX 17261531 17261628 -159712512 - MER91C DNA MER1_type -37 103 2 2410 78 3 0 chrX 17261989 17262282 -159711858 - AluSp SINE Alu -19 294 1 182 305 17 34 chrX 17262471 17262530 -159711610 + L2 LINE L2 3232 3289 -24 3787 115 21 16 chrX 17263118 17263693 -159710447 - MER4E LTR ERV1 0 779 202 2306 80 0 20 chrX 17263696 17263997 -159710143 + AluSq SINE Alu 1 295 -18 2191 101 10 3 chrX 17264005 17264311 -159709829 + AluSq SINE Alu 5 312 -1 201 182 0 0 chrX 17264311 17264366 -159709774 + (TA)n Simple_repeat Simple_repeat 1 55 0 1504 99 9 0 chrX 17264366 17264577 -159709563 - MER4E LTR ERV1 -566 213 1 502 252 126 6 chrX 17265601 17265760 -159708380 - MER5A DNA MER1_type -1 188 11 239 20 61 20 chrX 17265862 17265911 -159708229 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1616 186 3 26 chrX 17266353 17266486 -159707654 + AluJo SINE Alu 6 141 -171 2156 80 6 77 chrX 17266486 17266810 -159707330 + AluSx SINE Alu 1 301 -11 1616 186 3 26 chrX 17266810 17266983 -159707157 + AluJo SINE Alu 141 305 -7 391 289 101 80 chrX 17267204 17267958 -159706182 + HAL1 LINE L1 817 1586 -921 319 278 69 93 chrX 17267988 17268204 -159705936 + HAL1 LINE L1 2283 2493 -14 182 250 145 13 chrX 17268695 17268771 -159705369 + L3 LINE CR1 302 387 -1190 351 296 127 9 chrX 17269445 17269658 -159704482 + L3b LINE CR1 1103 1340 -243 669 266 97 41 chrX 17269779 17269811 -159704329 - MLT2B2 LTR ERVL -46 474 445 2236 83 0 10 chrX 17269811 17270111 -159704029 + AluSx SINE Alu 2 298 -14 669 266 97 41 chrX 17270111 17270376 -159703764 - MLT2B2 LTR ERVL -75 445 147 26 0 0 0 chrX 17270950 17270976 -159703164 + AT_rich Low_complexity Low_complexity 1 26 0 2508 76 0 3 chrX 17271314 17271628 -159702512 + AluSq SINE Alu 1 313 0 494 101 0 0 chrX 17271672 17271741 -159702399 + MADE1 DNA Mariner 12 80 0 254 314 0 0 chrX 17271940 17272058 -159702082 + A-rich Low_complexity Low_complexity 1 118 0 30 45 0 0 chrX 17272166 17272210 -159701930 + AT_rich Low_complexity Low_complexity 1 44 0 200 358 13 40 chrX 17272390 17272541 -159701599 - L2 LINE L2 -885 2429 2283 537 242 88 22 chrX 17273010 17273192 -159700948 - LTR16C LTR ERVL 0 491 298 328 279 135 0 chrX 17274395 17274506 -159699634 + L2 LINE L2 3147 3272 0 2319 100 3 0 chrX 17274656 17274957 -159699183 - AluSp SINE Alu -11 302 1 189 322 0 17 chrX 17275764 17275823 -159698317 + MIR SINE MIR 84 141 -67 2335 84 0 7 chrX 17276948 17277121 -159697019 - AluSp SINE Alu -7 306 134 2545 43 0 0 chrX 17277121 17277423 -159696717 - AluY SINE Alu -9 302 1 2335 84 0 7 chrX 17277423 17277557 -159696583 - AluSp SINE Alu -179 134 1 403 283 25 17 chrX 17278233 17278353 -159695787 - L2 LINE L2 -16 3256 3136 283 243 14 0 chrX 17279544 17279614 -159694526 - MLT1J2 LTR MaLR 0 450 380 919 244 122 18 chrX 17279645 17279924 -159694216 - MLT1J2 LTR MaLR -137 313 6 189 0 0 0 chrX 17280892 17280913 -159693227 + (T)n Simple_repeat Simple_repeat 1 21 0 256 250 0 0 chrX 17281024 17281084 -159693056 + GA-rich Low_complexity Low_complexity 1 60 0 2464 63 13 0 chrX 17281400 17281700 -159692440 - AluSp SINE Alu -9 304 1 966 231 89 0 chrX 17282283 17282552 -159691588 - L1MC4 LINE L1 -143 7899 7607 247 241 0 24 chrX 17282943 17282955 -159691185 + A-rich Low_complexity Low_complexity 1 12 -69 2036 125 0 7 chrX 17282955 17283243 -159690897 + AluSg SINE Alu 1 286 -24 247 241 0 24 chrX 17283243 17283313 -159690827 + A-rich Low_complexity Low_complexity 12 81 0 628 302 93 0 chrX 17283324 17283539 -159690601 + L3 LINE CR1 570 804 -773 2094 184 11 61 chrX 17283544 17284093 -159690047 + L1M4 LINE L1 4842 5356 -850 2404 78 7 0 chrX 17284093 17284402 -159689738 + AluY SINE Alu 1 311 0 2094 184 11 61 chrX 17284402 17284473 -159689667 + L1M4 LINE L1 5356 5429 -777 7007 164 67 72 chrX 17284490 17285477 -159688663 + L1MC3 LINE L1 6148 7191 -594 240 175 18 20 chrX 17285477 17285543 -159688597 + MLT1E LTR MaLR 65 161 -388 7007 164 67 72 chrX 17285543 17286126 -159688014 + L1MC3 LINE L1 7191 7775 -10 981 275 108 33 chrX 17286172 17286740 -159687400 + L2 LINE L2 2585 3183 -130 192 296 31 51 chrX 17286792 17286890 -159687250 + L2 LINE L2 3200 3295 -18 753 323 53 30 chrX 17286906 17287244 -159686896 + L3 LINE CR1 916 1261 -316 277 200 35 82 chrX 17287242 17287327 -159686813 - L2 LINE L2 -1 3312 3232 * 197 354 100 64 chrX 17287350 17287630 -159686510 + L3 LINE CR1 1284 1573 -4 216 204 0 0 chrX 17287738 17287782 -159686358 + T-rich Low_complexity Low_complexity 1 44 0 3312 39 2 0 chrX 17287791 17288197 -159685943 - L1PA7 LINE L1 -2 6152 5746 1441 264 50 32 chrX 17288679 17289115 -159685025 - LTR33 LTR ERVL -20 501 58 259 211 35 0 chrX 17289126 17289183 -159684957 + L2 LINE L2 2722 2780 -534 576 247 28 6 chrX 17289658 17289836 -159684304 + L1M4 LINE L1 2210 2391 -3755 426 241 122 19 chrX 17289896 17290207 -159683933 + L1M4 LINE L1 2980 3322 -2824 1112 263 117 23 chrX 17290214 17290881 -159683259 + L1M4 LINE L1 3390 4142 -2004 2065 112 0 7 chrX 17290937 17291253 -159682887 + AluSq SINE Alu 1 314 0 349 259 162 20 chrX 17291257 17291454 -159682686 + L1M4 LINE L1 4150 4374 -1772 322 285 81 46 chrX 17292019 17292279 -159681861 - L1MEd LINE L1 -4956 1163 895 11246 191 18 18 chrX 17292364 17295133 -159679007 - L1PA16 LINE L1 -1 6165 3398 2352 90 10 0 chrX 17295133 17295434 -159678706 - AluSq SINE Alu -7 306 3 11246 191 18 18 chrX 17295434 17295964 -159678176 - L1PA16 LINE L1 -2768 3398 2871 1880 118 0 14 chrX 17295964 17296243 -159677897 - AluSx SINE Alu -7 305 31 11246 191 18 18 chrX 17296243 17296545 -159677595 - L1PA16 LINE L1 -3295 2871 2571 21 71 0 0 chrX 17297035 17297077 -159677063 + AT_rich Low_complexity Low_complexity 1 42 0 3137 158 26 33 chrX 17298839 17299068 -159675072 + MER6A DNA MER2_type 1 230 -635 369 0 0 0 chrX 17299068 17299109 -159675031 + (TG)n Simple_repeat Simple_repeat 2 42 0 3137 158 26 33 chrX 17299109 17299488 -159674652 + MER6A DNA MER2_type 230 605 0 407 284 10 0 chrX 17300378 17300480 -159673660 + L3 LINE CR1 400 502 -1075 307 311 50 25 chrX 17300698 17300859 -159673281 + L1MEd LINE L1 990 1154 -4965 574 318 87 48 chrX 17300950 17301144 -159672996 - L1M4 LINE L1 -1220 4926 4741 2433 64 0 0 chrX 17301144 17301442 -159672698 - AluY SINE Alu -13 298 1 574 318 87 48 chrX 17301442 17302024 -159672116 - L1M4 LINE L1 -1405 4741 4104 188 156 44 67 chrX 17302059 17302104 -159672036 - L2 LINE L2 -2 3270 3227 595 325 50 60 chrX 17302197 17302634 -159671506 - L2 LINE L2 -56 3257 2825 615 255 107 20 chrX 17302660 17302856 -159671284 - L2 LINE L2 -1081 2233 2021 225 195 0 0 chrX 17302843 17302884 -159671256 - L2 LINE L2 -45 3227 3187 * 567 343 140 43 chrX 17302945 17303601 -159670539 - L1M4 LINE L1 -2082 4064 3345 334 258 102 59 chrX 17303612 17303868 -159670272 - L1M4 LINE L1 -2877 3269 3003 882 187 0 0 chrX 17304271 17304441 -159669699 - AluJb SINE Alu 0 303 134 2181 89 51 3 chrX 17304441 17304734 -159669406 - AluSp SINE Alu -6 307 1 1030 325 99 11 chrX 17304854 17305307 -159668833 + L3 LINE CR1 1042 1534 -43 500 313 69 71 chrX 17305768 17305849 -159668291 - L1MEd LINE L1 -5345 774 694 1575 101 190 16 chrX 17305849 17306107 -159668033 - AluSp SINE Alu -10 303 1 500 313 69 71 chrX 17306107 17306504 -159667636 - L1MEd LINE L1 -5425 694 297 3146 215 74 28 chrX 17306559 17307379 -159666761 + L1ME1 LINE L1 5259 6116 -50 265 159 70 45 chrX 17307413 17307570 -159666570 + (TTATA)n Simple_repeat Simple_repeat 5 165 0 24 67 0 0 chrX 17307583 17307628 -159666512 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 17307735 17307756 -159666384 + AT_rich Low_complexity Low_complexity 1 21 0 523 332 62 13 chrX 17307984 17308210 -159665930 - MIR SINE MIR -7 255 19 4242 171 42 13 chrX 17308264 17309218 -159664922 - L1MB1 LINE L1 -75 6093 5110 1096 125 99 39 chrX 17309209 17309288 -159664852 + L1MA10 LINE L1 6082 6155 -179 * 243 88 0 0 chrX 17309288 17309322 -159664818 + (CA)n Simple_repeat Simple_repeat 1 34 0 1096 125 99 39 chrX 17309322 17309474 -159664666 + L1MA10 LINE L1 6155 6327 -7 1630 185 76 50 chrX 17309670 17310053 -159664087 + MSTD LTR MaLR 1 393 -3 258 382 50 23 chrX 17310499 17310719 -159663421 - L2 LINE L2 -479 2835 2610 1386 138 3 0 chrX 17510976 17514074 -159460066 - ALR/Alpha Satellite centromeric -2 3108 1 1409 154 6 1 chrX 17514179 17522856 -159451284 + ALR/Alpha Satellite centromeric 1 8719 -14 1286 164 7 1 chrX 17522867 17524638 -159449502 + ALR/Alpha Satellite centromeric 1 1781 -12 8454 32 0 0 chrX 17524640 17526425 -159447715 - L1HS LINE L1 0 6155 4370 1162 182 7 2 chrX 17526525 17529685 -159444455 + ALR/Alpha Satellite centromeric 1 3177 -14 1213 178 6 2 chrX 17529696 17531550 -159442590 + ALR/Alpha Satellite centromeric 1 1860 -14 1195 181 5 1 chrX 17531561 17533416 -159440724 + ALR/Alpha Satellite centromeric 1 1862 -14 1130 185 6 1 chrX 17533427 17535281 -159438859 + ALR/Alpha Satellite centromeric 1 1862 -14 1186 179 6 1 chrX 17535292 17537146 -159436994 + ALR/Alpha Satellite centromeric 1 1863 -14 1193 178 5 1 chrX 17537157 17539012 -159435128 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 179 5 1 chrX 17539023 17540878 -159433262 + ALR/Alpha Satellite centromeric 1 1862 -14 1149 182 6 1 chrX 17540889 17542743 -159431397 + ALR/Alpha Satellite centromeric 1 1862 -14 1217 184 6 1 chrX 17542754 17544624 -159429516 + ALR/Alpha Satellite centromeric 1 1879 -82 1190 175 7 2 chrX 17544725 17548429 -159425711 + ALR/Alpha Satellite centromeric 1 3725 -14 1213 176 6 2 chrX 17548440 17550295 -159423845 + ALR/Alpha Satellite centromeric 1 1862 -14 1195 184 5 1 chrX 17550306 17552161 -159421979 + ALR/Alpha Satellite centromeric 1 1862 -14 923 189 19 1 chrX 17552172 17552608 -159421532 + ALR/Alpha Satellite centromeric 1 443 -69 1140 191 4 3 chrX 17552716 17554167 -159419973 + ALR/Alpha Satellite centromeric 1 1452 -14 1201 174 5 2 chrX 17554178 17556033 -159418107 + ALR/Alpha Satellite centromeric 1 1860 -14 1217 178 5 1 chrX 17556044 17557899 -159416241 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 178 5 1 chrX 17557910 17559765 -159414375 + ALR/Alpha Satellite centromeric 1 1862 -14 1193 178 5 1 chrX 17559776 17561631 -159412509 + ALR/Alpha Satellite centromeric 1 1862 -14 1209 185 6 1 chrX 17561642 17563496 -159410644 + ALR/Alpha Satellite centromeric 1 1862 -14 1160 185 6 1 chrX 17563507 17565361 -159408779 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 184 6 2 chrX 17565372 17567226 -159406914 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 178 6 1 chrX 17567237 17570958 -159403182 + ALR/Alpha Satellite centromeric 1 3738 -14 1197 175 6 1 chrX 17570969 17572823 -159401317 + ALR/Alpha Satellite centromeric 1 1862 -14 1188 180 5 1 chrX 17572834 17574689 -159399451 + ALR/Alpha Satellite centromeric 1 1862 -14 994 155 30 1 chrX 17574700 17575297 -159398843 + ALR/Alpha Satellite centromeric 1 614 -70 1216 184 7 1 chrX 17575401 17577529 -159396611 + ALR/Alpha Satellite centromeric 1 2139 -14 1217 183 6 1 chrX 17577540 17579394 -159394746 + ALR/Alpha Satellite centromeric 1 1862 -14 1186 181 6 1 chrX 17579405 17583125 -159391015 + ALR/Alpha Satellite centromeric 1 3738 -14 1203 177 9 2 chrX 17583136 17587531 -159386609 + ALR/Alpha Satellite centromeric 1 4424 -14 1205 176 7 2 chrX 17587542 17589665 -159384475 + ALR/Alpha Satellite centromeric 1 2133 -14 1166 172 8 2 chrX 17589676 17591798 -159382342 + ALR/Alpha Satellite centromeric 1 2133 -14 1198 176 6 2 chrX 17591809 17593667 -159380473 + ALR/Alpha Satellite centromeric 1 1866 -14 1216 172 7 2 chrX 17593678 17595710 -159378430 + ALR/Alpha Satellite centromeric 1 2043 -20 943 180 10 4 chrX 17595732 17596336 -159377804 + ALR/Alpha Satellite centromeric 1 607 -15 1244 152 6 1 chrX 17596348 17600592 -159373548 + ALR/Alpha Satellite centromeric 1 4266 0 918 203 8 3 chrX 17600697 17601435 -159372705 + ALR/Alpha Satellite centromeric 1 741 -16 1178 178 6 2 chrX 17601448 17603302 -159370838 + ALR/Alpha Satellite centromeric 1 1862 -14 1201 175 6 2 chrX 17603313 17605168 -159368972 + ALR/Alpha Satellite centromeric 1 1862 -14 1230 170 8 3 chrX 17605179 17607034 -159367106 + ALR/Alpha Satellite centromeric 1 1862 -14 1230 171 6 2 chrX 17607045 17608900 -159365240 + ALR/Alpha Satellite centromeric 1 1862 -14 1223 172 10 2 chrX 17608911 17610890 -159363250 + ALR/Alpha Satellite centromeric 1 1994 -55 1230 163 7 2 chrX 17610991 17612708 -159361432 - ALR/Alpha Satellite centromeric 0 1725 1 1216 165 8 3 chrX 17612719 17614574 -159359566 - ALR/Alpha Satellite centromeric 0 1865 1 1230 167 8 3 chrX 17614585 17616440 -159357700 - ALR/Alpha Satellite centromeric 0 1864 1 1213 169 6 1 chrX 17616451 17618306 -159355834 - ALR/Alpha Satellite centromeric 0 1864 1 1160 170 7 1 chrX 17618317 17620172 -159353968 - ALR/Alpha Satellite centromeric 0 1865 1 1201 166 7 1 chrX 17620183 17622038 -159352102 - ALR/Alpha Satellite centromeric 0 1864 1 1255 172 6 1 chrX 17622049 17623903 -159350237 - ALR/Alpha Satellite centromeric 0 1864 1 1130 170 7 1 chrX 17623914 17625769 -159348371 - ALR/Alpha Satellite centromeric 0 1865 1 1255 166 6 1 chrX 17625780 17627635 -159346505 - ALR/Alpha Satellite centromeric 0 1864 1 1203 169 6 1 chrX 17627646 17629501 -159344639 - ALR/Alpha Satellite centromeric 0 1864 1 1162 174 7 2 chrX 17629512 17631365 -159342775 - ALR/Alpha Satellite centromeric 0 1862 1 1195 174 9 2 chrX 17631376 17633340 -159340800 - ALR/Alpha Satellite centromeric -14 1977 1 3249 31 5 0 chrX 17633340 17633723 -159340417 + L1P LINE L1 4007 4391 -1755 866 191 18 0 chrX 17633827 17633995 -159340145 - ALR/Alpha Satellite centromeric 0 171 1 1169 167 8 1 chrX 17634006 17635350 -159338790 - ALR/Alpha Satellite centromeric 0 1352 1 1179 175 6 1 chrX 17635361 17637216 -159336924 - ALR/Alpha Satellite centromeric 0 1864 1 1217 172 8 2 chrX 17637227 17640947 -159333193 - ALR/Alpha Satellite centromeric 0 3743 1 1111 183 9 2 chrX 17640958 17642887 -159331253 - ALR/Alpha Satellite centromeric 0 1943 1 1686 196 62 17 chrX 17692887 17693305 -159280835 - L1M4 LINE L1 -1289 4857 4421 635 178 14 62 chrX 17693303 17693449 -159280691 - L1M4 LINE L1 -2012 4134 3996 * 420 20 0 0 chrX 17693950 17693999 -159280141 + (CA)n Simple_repeat Simple_repeat 2 50 0 1508 164 47 3 chrX 17694465 17694764 -159279376 + L1MA7 LINE L1 5973 6284 -7 345 314 50 0 chrX 17695467 17695607 -159278533 + L1ME LINE L1 37 183 -5887 234 317 152 0 chrX 17696063 17696227 -159277913 + L1ME LINE L1 2430 2618 -3462 1560 171 25 4 chrX 17696536 17696816 -159277324 + MLT1C LTR MaLR 132 417 -50 201 232 89 18 chrX 17698263 17698319 -159275821 - L2 LINE L2 -7 3265 3206 543 239 51 0 chrX 17699508 17699646 -159274494 - MER5A DNA MER1_type 0 189 45 1662 181 46 38 chrX 17699652 17699838 -159274302 - MLT1B LTR MaLR -16 374 191 351 0 0 0 chrX 17699838 17699877 -159274263 + (GA)n Simple_repeat Simple_repeat 2 40 0 1662 181 46 38 chrX 17699877 17700061 -159274079 - MLT1B LTR MaLR -199 191 1 221 224 0 20 chrX 17700061 17700110 -159274030 - MER5A DNA MER1_type -138 51 4 301 344 53 36 chrX 17701668 17701970 -159272170 - L1M4 LINE L1 -2507 3639 3333 1485 189 108 44 chrX 17701990 17702333 -159271807 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 17702608 17702630 -159271510 + AT_rich Low_complexity Low_complexity 1 22 0 2334 97 0 7 chrX 17702836 17703144 -159270996 - AluSx SINE Alu -6 306 1 5508 86 56 4 chrX 17703162 17703990 -159270150 - L1MA2 LINE L1 -1 6303 5433 464 226 110 14 chrX 17704018 17704164 -159269976 - L1MC/D LINE L1 -2089 5719 5560 1037 127 16 19 chrX 17704168 17704381 -159269759 - L1MC/D LINE L1 -854 5292 5101 2041 138 0 19 chrX 17704393 17704704 -159269436 - AluSx SINE Alu -7 305 1 1731 178 11 0 chrX 17704864 17705145 -159268995 - AluJo SINE Alu -24 288 5 1206 264 57 10 chrX 17705162 17705545 -159268595 - L1MC/D LINE L1 -2089 5719 5319 355 311 96 47 chrX 17705553 17705916 -159268224 - L1MC/D LINE L1 -857 5289 4909 367 176 40 0 chrX 17706679 17706753 -159267387 - MLT1H LTR MaLR 0 505 429 295 317 28 14 chrX 17706874 17707019 -159267121 - HAL1 LINE L1 -1249 1258 1112 226 268 10 10 chrX 17707536 17707633 -159266507 + GA-rich Low_complexity Low_complexity 4 100 0 1895 143 23 17 chrX 17707728 17707924 -159266216 - L1MA9 LINE L1 -1 6311 6111 1640 169 83 18 chrX 17707924 17708250 -159265890 + MER7A DNA MER2_type 1 345 -1 1895 143 23 17 chrX 17708250 17708402 -159265738 - L1MA9 LINE L1 -201 6111 5961 1907 161 18 0 chrX 17708419 17708749 -159265391 - L1PB4 LINE L1 -14 6142 5807 738 184 0 0 chrX 17708755 17708896 -159265244 + L1 LINE L1 4852 4992 -1154 * 3847 169 27 3 chrX 17708892 17709612 -159264528 - L1MA9 LINE L1 -338 5974 5238 292 87 0 0 chrX 17710020 17710066 -159264074 - L1MA3 LINE L1 0 6305 6260 394 267 30 107 chrX 17711242 17711618 -159262522 - MLT1H LTR MaLR -32 377 28 572 311 36 15 chrX 17713373 17713569 -159260571 + MIR SINE MIR 51 250 -12 1246 171 49 4 chrX 17713877 17714141 -159259999 - MER33 DNA MER1_type -48 276 1 255 61 0 0 chrX 17714148 17714181 -159259959 + (AGATG)n Simple_repeat Simple_repeat 3 35 0 300 339 82 6 chrX 17715053 17715236 -159258904 - L3b LINE CR1 -242 1341 1145 2018 110 22 0 chrX 17715541 17715813 -159258327 + AluSx SINE Alu 1 278 -34 207 0 0 0 chrX 17715813 17715836 -159258304 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 496 241 146 50 chrX 17715844 17716105 -159258035 + L2 LINE L2 1876 2161 -1153 1131 182 19 0 chrX 17716585 17716799 -159257341 + MER20 DNA MER1_type 2 219 0 239 299 75 37 chrX 17717029 17717136 -159257004 + MIR SINE MIR 26 136 -72 241 293 13 27 chrX 17717196 17717271 -159256869 + 7SK RNA RNA 1 74 -119 2221 114 0 16 chrX 17718752 17719067 -159255073 + AluSg SINE Alu 1 310 0 398 313 88 9 chrX 17719412 17719749 -159254391 + L1ME4a LINE L1 5523 5905 -216 23 0 0 0 chrX 17720027 17720050 -159254090 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 17721980 17722009 -159252131 + AT_rich Low_complexity Low_complexity 1 29 0 2245 181 55 4 chrX 17722017 17722728 -159251412 + L1MB2 LINE L1 4887 5639 -544 43308 44 4 1 chrX 17722742 17728873 -159245267 - L1PA4 LINE L1 0 6155 1 2600 161 33 4 chrX 17728871 17729330 -159244810 + L1MB2 LINE L1 5623 6094 -77 * 407 200 0 0 chrX 17729333 17729403 -159244737 + FAM SINE Alu 89 158 -27 3263 125 101 12 chrX 17729428 17730002 -159244138 - L1PB4 LINE L1 -2 6154 5530 4020 109 6 19 chrX 17730002 17730263 -159243877 - L1PA14 LINE L1 -2 6159 5896 1858 167 0 3 chrX 17730263 17730562 -159243578 - AluJb SINE Alu -14 298 1 4020 109 6 19 chrX 17730562 17730925 -159243215 - L1PA14 LINE L1 -265 5896 5542 6908 178 17 12 chrX 17730926 17732799 -159241341 - L1PA12 LINE L1 -3766 3818 1926 2406 160 60 8 chrX 17732823 17733532 -159240608 - L1P4 LINE L1 -624 5542 4806 394 331 71 39 chrX 17733528 17733836 -159240304 - L1M2 LINE L1 -6528 321 4 * 231 218 0 0 chrX 17733864 17733919 -159240221 + L1MB2 LINE L1 6116 6170 -1 472 340 115 32 chrX 17733975 17734375 -159239765 + L2 LINE L2 2881 3313 0 454 383 24 8 chrX 17735010 17735258 -159238882 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 17735524 17735650 -159238490 + L3 LINE CR1 500 626 -951 462 148 289 0 chrX 17737594 17737727 -159236413 + MER5A DNA MER1_type 4 179 -10 331 143 18 0 chrX 17738465 17738521 -159235619 + THE1C LTR MaLR 319 375 0 329 242 50 43 chrX 17738907 17739068 -159235072 + MER103 DNA DNA 3 164 -2 207 69 0 0 chrX 17739791 17739820 -159234320 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 189 390 134 23 chrX 17740391 17740735 -159233405 - L2 LINE L2 -338 2976 2595 1218 205 4 0 chrX 17740735 17740984 -159233156 - L1ME1 LINE L1 -237 5929 5680 297 206 48 0 chrX 17740981 17741044 -159233096 + L1MD2 LINE L1 6059 6124 -235 * 29 0 0 0 chrX 17741046 17741075 -159233065 + AT_rich Low_complexity Low_complexity 1 29 0 1208 248 94 64 chrX 17741992 17742524 -159231616 + MLT1H LTR MaLR 1 548 -1 2536 172 36 12 chrX 17742553 17743046 -159231094 - MLT1D LTR MaLR 0 505 1 357 286 173 1 chrX 17743210 17743409 -159230731 - MIR SINE MIR 0 262 34 24 0 0 0 chrX 17743723 17743747 -159230393 + AT_rich Low_complexity Low_complexity 1 24 0 2822 150 17 9 chrX 17744225 17744686 -159229454 - MLT1C LTR MaLR 0 467 3 569 330 115 3 chrX 17745171 17745519 -159228621 - L3 LINE CR1 -1 1576 1190 222 357 71 0 chrX 17745552 17745678 -159228462 - L3 LINE CR1 -503 1074 940 867 125 7 0 chrX 17745931 17746075 -159228065 - L1MA4A LINE L1 -12 6291 6147 420 364 20 54 chrX 17746198 17746495 -159227645 + L1MEd LINE L1 103 389 -5730 237 33 0 0 chrX 17746539 17746569 -159227571 + (CAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 17746614 17746636 -159227504 + AT_rich Low_complexity Low_complexity 1 22 0 333 262 159 24 chrX 17746649 17746901 -159227239 + L1MEd LINE L1 926 1211 -4908 373 191 247 12 chrX 17747070 17747232 -159226908 + L1MEd LINE L1 3010 3209 -2920 4885 158 43 14 chrX 17747366 17748336 -159225804 + L1MB2 LINE L1 5172 6171 0 394 312 26 64 chrX 17748342 17748576 -159225564 + L1MEd LINE L1 3325 3549 -2580 12321 31 0 1 chrX 17748607 17750106 -159224034 - L1P LINE L1 -2134 4012 2515 9906 30 2 0 chrX 17750106 17752051 -159222089 + L1PA3 LINE L1 4206 6152 -3 243 0 0 0 chrX 17752057 17752084 -159222056 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 242 279 112 6 chrX 17752087 17752248 -159221892 + L1MEd LINE L1 3572 3749 -2380 2540 159 52 11 chrX 17752251 17752439 -159221701 - Tigger1 DNA MER2_type -3 2415 2236 1680 184 0 24 chrX 17752439 17752767 -159221373 + AluJb SINE Alu 1 321 0 2540 159 52 11 chrX 17752767 17753053 -159221087 - Tigger1 DNA MER2_type -182 2236 1919 1570 136 0 4 chrX 17753053 17753288 -159220852 + AluSg/x SINE Alu 76 309 -1 6680 115 14 21 chrX 17753288 17753508 -159220632 - Tigger1 DNA MER2_type -1391 1027 807 2311 91 13 0 chrX 17753508 17753817 -159220323 - AluSp SINE Alu 0 313 1 6680 115 14 21 chrX 17753817 17754630 -159219510 - Tigger1 DNA MER2_type -1611 807 1 1278 181 30 77 chrX 17755037 17755478 -159218662 + LTR37A LTR ERV1 7 426 0 360 167 30 0 chrX 17756185 17756251 -159217889 - MER92C LTR ERV1 0 554 487 310 231 0 0 chrX 17756471 17756536 -159217604 - MER92B LTR ERV1 -571 65 1 260 260 0 39 chrX 17756993 17757070 -159217070 - MER31-int LTR ERV1 -381 4555 4482 390 237 10 0 chrX 17757137 17757234 -159216906 - MER31-int LTR ERV1 -467 4469 4372 257 150 0 0 chrX 17757273 17757313 -159216827 - MER31-int LTR ERV1 -567 4369 4330 502 209 16 39 chrX 17757371 17757500 -159216640 - LTR37A LTR ERV1 -300 126 1 1286 233 33 100 chrX 17757517 17758006 -159216134 - MER31-int LTR ERV1 -703 4233 3778 746 182 10 134 chrX 17758355 17758646 -159215494 - MER31-int LTR ERV1 -3643 1293 1039 354 179 0 0 chrX 17759048 17759115 -159215025 - MER92C LTR ERV1 -1 553 487 309 250 150 0 chrX 17759265 17759365 -159214775 - MER92B LTR ERV1 -521 115 1 11349 43 2 3 chrX 17760364 17762852 -159211288 + L1PA5 LINE L1 3666 6151 -3 37 62 0 0 chrX 17763113 17763178 -159210962 + AT_rich Low_complexity Low_complexity 1 65 0 2259 113 0 3 chrX 17763223 17763534 -159210606 + AluSq SINE Alu 1 310 -3 47 73 0 0 chrX 17763586 17763682 -159210458 + AT_rich Low_complexity Low_complexity 1 96 0 216 97 0 0 chrX 17764270 17764301 -159209839 + (TG)n Simple_repeat Simple_repeat 2 32 0 1272 165 132 51 chrX 17764761 17764976 -159209164 - LTR37A LTR ERV1 0 426 230 396 0 0 0 chrX 17764976 17765020 -159209120 + (TG)n Simple_repeat Simple_repeat 2 45 0 1272 165 132 51 chrX 17765020 17765198 -159208942 - LTR37A LTR ERV1 -196 230 1 303 250 65 28 chrX 17765392 17765500 -159208640 + L1ME3A LINE L1 5845 5956 -214 568 248 80 118 chrX 17765865 17765970 -159208170 - MER34 LTR ERV1 -3 539 432 2285 98 3 0 chrX 17765970 17766267 -159207873 - AluSq SINE Alu -15 298 1 568 248 80 118 chrX 17766267 17766425 -159207715 - MER34 LTR ERV1 -110 432 270 2122 136 128 10 chrX 17766425 17766808 -159207332 - MSTA LTR MaLR 0 428 1 568 248 80 118 chrX 17766808 17767103 -159207037 - MER34 LTR ERV1 -272 270 1 264 301 57 67 chrX 17767307 17767498 -159206642 - MER20 DNA MER1_type -6 213 23 2529 70 21 49 chrX 17767498 17767884 -159206256 - THE1C LTR MaLR 0 375 1 264 301 57 67 chrX 17767884 17767901 -159206239 - MER20 DNA MER1_type -196 23 7 2280 146 26 81 chrX 17767906 17768413 -159205727 + L1MB2 LINE L1 5693 6171 0 500 207 124 8 chrX 17769484 17769605 -159204535 - MER92B LTR ERV1 -4 632 498 907 58 22 0 chrX 17769610 17769748 -159204392 + (TTTC)n Simple_repeat Simple_repeat 2 142 0 666 205 8 16 chrX 17769785 17770034 -159204106 - L1MA9 LINE L1 -22 6290 5948 932 159 67 0 chrX 17770037 17770269 -159203871 + L1MA9 LINE L1 5686 5952 -226 1628 221 9 52 chrX 17770269 17770690 -159203450 - MER92B LTR ERV1 -142 494 92 1998 121 73 16 chrX 17770692 17771007 -159203133 + MER1B DNA MER1_type 1 333 -6 2271 79 41 0 chrX 17771007 17771298 -159202842 + AluSg SINE Alu 1 303 -7 427 136 48 87 chrX 17771311 17771414 -159202726 - MER92B LTR ERV1 -537 99 1 270 318 135 41 chrX 17771415 17771585 -159202555 + MIR SINE MIR 7 192 -70 22 80 0 0 chrX 17772103 17772153 -159201987 + AT_rich Low_complexity Low_complexity 1 50 0 1685 312 219 20 chrX 17772671 17773670 -159200470 + L2 LINE L2 994 1793 -1520 335 246 67 73 chrX 17773670 17773849 -159200291 - MER5B DNA MER1_type 0 178 1 1685 312 219 20 chrX 17773849 17774551 -159199589 + L2 LINE L2 1793 3042 -271 584 343 53 4 chrX 17774550 17774795 -159199345 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 17774894 17774936 -159199204 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 17774973 17775097 -159199043 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 17775500 17775811 -159198329 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 17775915 17775940 -159198200 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 17776891 17777216 -159196924 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 17777247 17777261 -159196879 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 17777261 17777581 -159196559 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 17777581 17777624 -159196516 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 17778044 17778396 -159195744 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 17779004 17779306 -159194834 - AluSp SINE Alu -9 304 1 1957 212 24 21 chrX 17779580 17780046 -159194094 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 17780303 17780652 -159193488 + MER7A DNA MER2_type 1 346 0 334 313 140 44 chrX 17781168 17781669 -159192471 + L1 LINE L1 3176 3724 -2422 2263 143 34 31 chrX 17781801 17782219 -159191921 - MSTB1 LTR MaLR -13 419 1 253 251 110 21 chrX 17782257 17782448 -159191692 - L1M4 LINE L1 -1441 4705 4498 235 300 57 51 chrX 17782751 17783101 -159191039 - L1M4 LINE L1 -2106 4040 3689 515 289 83 40 chrX 17783297 17783997 -159190143 - L1M4 LINE L1 -2751 3395 2666 3859 140 10 2 chrX 17784002 17784616 -159189524 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 17784625 17785858 -159188282 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 17785860 17785927 -159188213 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 17786003 17786422 -159187718 - L1M4 LINE L1 -3572 2574 2113 1563 201 115 21 chrX 17786714 17787192 -159186948 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 17787764 17787919 -159186221 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 17788523 17788544 -159185596 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 17788894 17789011 -159185129 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 17789352 17789404 -159184736 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 17789553 17789623 -159184517 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 17789661 17789892 -159184248 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 17790144 17790274 -159183866 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 17790983 17791786 -159182354 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 17791794 17792072 -159182068 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 17792072 17792347 -159181793 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 17792380 17792854 -159181286 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 17792891 17793184 -159180956 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 17793403 17793576 -159180564 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 17794526 17794719 -159179421 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 17795448 17795471 -159178669 + AT_rich Low_complexity Low_complexity 1 23 0 301 155 0 0 chrX 17796418 17796476 -159177664 + L1MA4A LINE L1 6235 6292 -11 1808 111 49 85 chrX 17796662 17797051 -159177089 - THE1C LTR MaLR 0 375 1 424 366 45 24 chrX 17797906 17798152 -159175988 - MIR SINE MIR -9 253 3 450 88 0 0 chrX 17798811 17798879 -159175261 + (TG)n Simple_repeat Simple_repeat 2 69 0 326 314 93 0 chrX 17799211 17799351 -159174789 + MIR SINE MIR 104 256 -6 2245 173 0 14 chrX 17800975 17801132 -159173008 - MER89 LTR ERV1 0 559 401 2783 101 28 14 chrX 17801132 17801558 -159172582 + MSTB1 LTR MaLR 1 432 0 2245 173 0 14 chrX 17801558 17801864 -159172276 - MER89 LTR ERV1 -158 401 4 24 0 0 0 chrX 17802125 17802149 -159171991 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 17802229 17802268 -159171872 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 17802401 17802514 -159171626 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 17802887 17804137 -159170003 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 17804767 17804807 -159169333 + (TATG)n Simple_repeat Simple_repeat 3 38 0 327 49 0 0 chrX 17804989 17805030 -159169110 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 17805153 17805314 -159168826 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 17806236 17806538 -159167602 + AluSq SINE Alu 1 301 -12 1606 62 0 5 chrX 17806874 17807068 -159167072 + AluY SINE Alu 1 193 -118 6219 101 7 6 chrX 17807687 17808934 -159165206 + L1PA15 LINE L1 4905 6163 -2 264 289 106 10 chrX 17809189 17809293 -159164847 - MIR SINE MIR -50 212 99 761 191 105 34 chrX 17809495 17809704 -159164436 + MER58A DNA MER1_type 1 224 0 252 149 68 0 chrX 17810825 17810899 -159163241 + (TA)n Simple_repeat Simple_repeat 2 80 0 224 261 91 11 chrX 17811272 17811360 -159162780 - MIR3 SINE MIR -9 199 105 693 260 97 50 chrX 17811989 17812328 -159161812 + LTR16C LTR ERVL 114 468 -23 1542 169 0 22 chrX 17812328 17812606 -159161534 - L1M3 LINE L1 -567 5616 5345 1753 153 3 3 chrX 17812608 17812890 -159161250 + Ricksha DNA DNA 7 288 -1758 * 8143 132 35 11 chrX 17812888 17814283 -159159857 + Ricksha DNA DNA 1821 3209 -39 303 304 13 0 chrX 17814283 17814362 -159159778 - MER82 DNA MER2_type -526 127 48 601 210 7 110 chrX 17814425 17814573 -159159567 - L1M3 LINE L1 -787 5359 5254 270 0 0 0 chrX 17814573 17814603 -159159537 + (CA)n Simple_repeat Simple_repeat 2 31 0 601 210 7 110 chrX 17814603 17814744 -159159396 - L1M3 LINE L1 -892 5254 5100 1587 31 5 0 chrX 17814765 17814959 -159159181 + L1PA4 LINE L1 5958 6152 -3 3054 198 13 63 chrX 17815074 17815751 -159158389 + MER82 DNA MER2_type 1 643 -10 292 252 14 35 chrX 17815773 17815916 -159158224 + (CATATA)n Simple_repeat Simple_repeat 5 144 0 576 311 56 20 chrX 17815919 17816276 -159157864 + L1MC/D LINE L1 5451 5820 -1988 26604 124 38 12 chrX 17816280 17820444 -159153696 + L1P3 LINE L1 763 5131 -1350 7216 36 6 0 chrX 17820444 17821676 -159152464 - L1PA5 LINE L1 0 6154 4906 26604 124 38 12 chrX 17821676 17822481 -159151659 + L1P3 LINE L1 5131 5914 -567 1016 199 76 0 chrX 17822485 17822776 -159151364 + L1MB8 LINE L1 3029 3341 -2805 614 98 20 0 chrX 17822778 17822880 -159151260 + L1PB2 LINE L1 6046 6149 -2 2299 219 23 9 chrX 17822888 17823460 -159150680 + L1MB8 LINE L1 5593 6172 -6 3278 155 19 70 chrX 17824551 17825279 -159148861 + LTR8 LTR ERV1 1 691 0 183 234 0 43 chrX 17825443 17825490 -159148650 - L2 LINE L2 0 3313 3269 491 360 54 19 chrX 17825494 17825752 -159148388 - L2 LINE L2 -196 3117 2851 1388 205 79 55 chrX 17825828 17826247 -159147893 + MER92B LTR ERV1 15 443 -193 226 232 50 50 chrX 17826249 17826348 -159147792 + LTR48B LTR ERV1 4 102 -542 * 1138 223 61 72 chrX 17826319 17826727 -159147413 + MER39 LTR ERV1 175 706 -1 705 260 15 35 chrX 17826727 17826908 -159147232 + MER92B LTR ERV1 453 629 -7 289 83 0 0 chrX 17826893 17826929 -159147211 - U2 snRNA snRNA -152 36 1 * 404 338 21 0 chrX 17826959 17827101 -159147039 - L2 LINE L2 -331 2982 2838 4929 105 46 15 chrX 17827193 17827948 -159146192 + MER4E LTR ERV1 1 779 0 1923 171 118 0 chrX 17827948 17828329 -159145811 + MSTC LTR MaLR 3 428 0 284 119 153 0 chrX 17828683 17828742 -159145398 - MER92C LTR ERV1 0 554 487 506 213 37 29 chrX 17828827 17828963 -159145177 - MER92B LTR ERV1 -499 137 1 3342 174 34 17 chrX 17829275 17829925 -159144215 + MER67B LTR ERV1 1 661 0 3011 171 71 3 chrX 17830482 17831071 -159143069 - LTR48B LTR ERV1 -2 642 14 576 96 0 67 chrX 17831077 17831141 -159142999 + MER4A LTR ERV1 1 57 -607 5259 99 31 11 chrX 17831141 17831905 -159142235 - LTR17 LTR ERV1 0 780 1 576 96 0 67 chrX 17831905 17831944 -159142196 + MER4A LTR ERV1 57 97 -567 * 1917 111 159 79 chrX 17831941 17832319 -159141821 + MER4A LTR ERV1 257 664 0 4702 160 76 74 chrX 17832431 17832934 -159141206 - LTR17-int LTR ERV1 -164 6167 5667 2271 86 0 38 chrX 17832934 17833248 -159140892 + AluSg SINE Alu 2 303 -7 4702 160 76 74 chrX 17833248 17833897 -159140243 - LTR17-int LTR ERV1 -664 5667 5012 472 243 26 47 chrX 17833904 17834122 -159140018 - LTR48B-int LTR ERV1 -2709 3622 1981 8067 149 22 16 chrX 17834189 17836642 -159137498 - L1MA4A LINE L1 -5 7002 4565 9388 188 112 10 chrX 17836721 17836927 -159137213 - L1MA4A LINE L1 -4724 2125 1941 2254 106 0 0 chrX 17836927 17837228 -159136912 - AluSx SINE Alu -11 301 1 9388 188 112 10 chrX 17837228 17838948 -159135192 - L1MA4A LINE L1 -4908 1941 2 584 211 43 29 chrX 17839007 17839215 -159134925 - LTR48B-int LTR ERV1 -3170 1953 1743 525 196 0 0 chrX 17839427 17839524 -159134616 - LTR48B-int LTR ERV1 -2878 3453 3357 1620 137 57 25 chrX 17839717 17840071 -159134069 - LTR48B-int LTR ERV1 -156 1630 1347 1234 244 40 20 chrX 17840063 17840366 -159133774 - LTR48B-int LTR ERV1 -4231 2100 1792 * 518 199 19 106 chrX 17840364 17840582 -159133558 - LTR48B-int LTR ERV1 -4554 1728 288 * 374 206 0 22 chrX 17841079 17841171 -159132969 - LTR48B-int LTR ERV1 -4954 1377 1288 249 211 173 0 chrX 17841244 17841296 -159132844 - tRNA-Glu-GAG tRNA tRNA 0 75 15 1164 160 4 59 chrX 17841650 17841888 -159132252 - LTR48B-int LTR ERV1 -6081 250 26 4285 138 40 14 chrX 17841888 17842592 -159131548 + MER50 LTR ERV1 1 722 -12 3499 153 42 2 chrX 17842660 17843279 -159130861 - LTR48B LTR ERV1 0 644 1 3834 130 5 44 chrX 17843382 17844043 -159130097 - MER41B LTR ERV1 0 635 1 691 251 163 20 chrX 17844057 17844412 -159129728 + HAL1b LINE L1 19 424 -924 1005 226 99 14 chrX 17844645 17844999 -159129141 + HAL1b LINE L1 719 1102 -246 22 35 0 0 chrX 17845675 17845704 -159128436 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 17846086 17846121 -159128019 + AT_rich Low_complexity Low_complexity 1 35 0 192 263 175 0 chrX 17846319 17846376 -159127764 - MIR SINE MIR -118 144 78 2161 85 0 14 chrX 17846459 17846742 -159127398 + AluSq SINE Alu 1 279 -34 315 0 0 0 chrX 17846742 17846777 -159127363 + (CA)n Simple_repeat Simple_repeat 2 36 0 30 77 0 0 chrX 17846824 17846889 -159127251 + AT_rich Low_complexity Low_complexity 1 65 0 296 257 87 87 chrX 17847013 17847219 -159126921 + MLT1H LTR MaLR 97 302 -247 1553 138 42 69 chrX 17847337 17847551 -159126589 + L1MA8 LINE L1 5957 6160 -131 2049 113 20 23 chrX 17847551 17847853 -159126287 + AluSq SINE Alu 1 301 -12 1553 138 42 69 chrX 17847853 17847972 -159126168 + L1MA8 LINE L1 6160 6281 -10 2354 115 46 48 chrX 17847976 17848111 -159126029 + MER75 DNA T2_type 1 135 -379 1673 113 46 0 chrX 17848111 17848383 -159125757 - AluSx SINE Alu 0 318 36 2354 115 46 48 chrX 17848383 17848638 -159125502 + MER75 DNA T2_type 135 391 -123 2122 137 22 0 chrX 17848638 17848951 -159125189 + MER1B DNA MER1_type 20 339 0 446 228 248 21 chrX 17849234 17849379 -159124761 + MER5A DNA MER1_type 9 186 -3 996 233 9 9 chrX 17849392 17849615 -159124525 + MER58A DNA MER1_type 2 224 0 302 212 59 12 chrX 17849687 17849772 -159124368 + MIR SINE MIR 75 163 -99 378 0 0 0 chrX 17849773 17849815 -159124325 + (TG)n Simple_repeat Simple_repeat 2 43 0 1468 151 105 12 chrX 17850690 17850948 -159123192 - AluJo SINE Alu -30 282 1 1097 190 5 5 chrX 17851085 17851269 -159122871 - MER5A DNA MER1_type -5 184 1 427 268 146 0 chrX 17852794 17852958 -159121182 + MIR SINE MIR 45 232 -30 2216 108 18 54 chrX 17852965 17853354 -159120786 - THE1C LTR MaLR 0 375 1 426 85 0 0 chrX 17853373 17853432 -159120708 + (ATGGTG)n Simple_repeat Simple_repeat 4 62 0 292 304 62 18 chrX 17854470 17854582 -159119558 + L2 LINE L2 3186 3302 -11 517 152 33 0 chrX 17854709 17854801 -159119339 - L1MC4 LINE L1 -3 8039 7945 240 162 0 0 chrX 17854827 17854864 -159119276 - THE1A LTR MaLR -3 352 316 1100 83 0 0 chrX 17854883 17855027 -159119113 - THE1A LTR MaLR -206 149 6 1375 201 98 24 chrX 17855032 17855451 -159118689 - L1MC4 LINE L1 -140 7902 7453 1504 215 29 23 chrX 17855453 17855802 -159118338 + MLT1A1 LTR MaLR 15 365 0 326 241 0 65 chrX 17855810 17855889 -159118251 - L1MC4 LINE L1 -605 7437 7365 2166 179 29 69 chrX 17855889 17855958 -159118182 - MLT1D LTR MaLR 0 505 435 1726 114 20 108 chrX 17855958 17856299 -159117841 + AluYb8 SINE Alu 1 311 -7 2166 179 29 69 chrX 17856299 17856753 -159117387 - MLT1D LTR MaLR -70 435 3 326 241 0 65 chrX 17856753 17856781 -159117359 - L1MC4 LINE L1 -677 7365 7337 2415 61 7 7 chrX 17856816 17857110 -159117030 + AluSq SINE Alu 1 294 -19 206 341 57 8 chrX 17857778 17857901 -159116239 - MIR3 SINE MIR -6 202 74 573 274 48 6 chrX 17858551 17858719 -159115421 + MIR SINE MIR 40 214 -48 1608 195 19 30 chrX 17858989 17859358 -159114782 + MLT1A1 LTR MaLR 1 365 0 326 320 117 22 chrX 17859896 17860127 -159114013 - MIR SINE MIR -9 253 1 410 233 25 114 chrX 17860519 17860608 -159113532 - HAL1 LINE L1 0 2507 2412 1995 105 30 0 chrX 17860608 17860875 -159113265 - AluSx SINE Alu -37 275 1 410 233 25 114 chrX 17860875 17861030 -159113110 - HAL1 LINE L1 -95 2412 2285 508 300 31 0 chrX 17861076 17861206 -159112934 - L2 LINE L2 0 3313 3180 441 307 127 44 chrX 17861319 17861775 -159112365 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 17861848 17861877 -159112263 + AT_rich Low_complexity Low_complexity 1 29 0 1015 240 14 0 chrX 17862082 17862290 -159111850 - MER58A DNA MER1_type -1 223 13 372 304 40 76 chrX 17862609 17862912 -159111228 - HAL1 LINE L1 -2214 293 2 37 39 0 0 chrX 17863308 17863359 -159110781 + AT_rich Low_complexity Low_complexity 1 51 0 2470 60 0 0 chrX 17863384 17863683 -159110457 + AluY SINE Alu 1 299 -12 24 32 0 0 chrX 17863700 17863731 -159110409 + AT_rich Low_complexity Low_complexity 1 31 0 2859 100 200 45 chrX 17864163 17864712 -159109428 + MER51A LTR ERV1 1 634 0 274 284 0 15 chrX 17864862 17864929 -159109211 + L2 LINE L2 3238 3303 -10 2317 71 0 0 chrX 17865068 17865402 -159108738 - AluSg SINE Alu 0 334 1 2319 98 3 16 chrX 17866962 17867279 -159106861 - AluSp SINE Alu 0 313 1 1918 134 0 29 chrX 17867544 17867858 -159106282 - AluSx SINE Alu -7 305 1 226 140 140 0 chrX 17868947 17868997 -159105143 + L1ME1 LINE L1 3644 3700 -2446 1680 153 25 53 chrX 17868997 17869317 -159104823 + AluJb SINE Alu 1 311 -1 1801 247 26 31 chrX 17869326 17869909 -159104231 + L1ME1 LINE L1 3673 4252 -1894 1717 162 19 44 chrX 17869912 17870227 -159103913 - AluJo SINE Alu -3 309 3 234 0 0 0 chrX 17870330 17870356 -159103784 + (TTTAA)n Simple_repeat Simple_repeat 5 30 0 307 223 0 43 chrX 17870362 17870456 -159103684 - L1M LINE L1 -941 5403 5314 * 672 130 106 0 chrX 17870446 17870569 -159103571 - L1MC3 LINE L1 -1 7784 7649 1706 219 27 58 chrX 17870581 17871039 -159103101 + L1ME1 LINE L1 5637 6108 -58 1625 144 24 48 chrX 17871039 17871414 -159102726 + L1MA7 LINE L1 5925 6290 -1 1706 219 27 58 chrX 17871414 17871439 -159102701 + L1ME1 LINE L1 6108 6132 -34 2351 74 0 0 chrX 17871439 17871735 -159102405 - AluSg1 SINE Alu -13 296 1 1706 219 27 58 chrX 17871735 17871797 -159102343 + L1ME1 LINE L1 6132 6166 0 208 380 36 22 chrX 17871854 17871991 -159102149 - L2 LINE L2 -181 3091 2953 258 217 0 0 chrX 17872203 17872249 -159101891 - MLT1K LTR MaLR -5 583 538 35 0 0 0 chrX 17872273 17872308 -159101832 + AT_rich Low_complexity Low_complexity 1 35 0 486 304 134 0 chrX 17872584 17872778 -159101362 - MLT1K LTR MaLR -235 353 134 2035 104 7 20 chrX 17872829 17873127 -159101013 - AluSx SINE Alu -18 294 1 21 95 0 0 chrX 17873201 17873264 -159100876 + AT_rich Low_complexity Low_complexity 1 63 0 256 361 113 45 chrX 17873849 17874427 -159099713 + L2 LINE L2 2082 2700 -609 3112 51 44 0 chrX 17874427 17874836 -159099304 + L1PA8 LINE L1 5743 6169 -3 831 256 148 33 chrX 17875305 17875773 -159098367 - MLT1G1 LTR MaLR 0 595 14 890 251 94 15 chrX 17876279 17876737 -159097403 + L1ME3A LINE L1 2115 2573 -3642 531 263 31 66 chrX 17876842 17877070 -159097070 + LTR16A LTR ERVL 115 334 -116 512 155 78 0 chrX 17877096 17877199 -159096941 - L1MA9 LINE L1 -22 6290 6180 1372 143 23 26 chrX 17877202 17877467 -159096673 - L1MA9 LINE L1 -232 6080 5817 577 299 30 23 chrX 17877558 17877859 -159096281 + L1ME3A LINE L1 2686 2988 -3227 * 2175 248 52 55 chrX 17877836 17878630 -159095510 + L1ME3A LINE L1 5381 6171 -68 627 248 57 34 chrX 17879040 17879103 -159095037 - LTR50 LTR ERVL 0 795 735 2088 104 25 0 chrX 17879103 17879383 -159094757 + AluSq SINE Alu 1 287 -26 627 248 57 34 chrX 17879383 17879581 -159094559 - LTR50 LTR ERVL -60 735 528 519 216 50 106 chrX 17879602 17879801 -159094339 - LTR50 LTR ERVL -607 188 1 1375 254 22 6 chrX 17880858 17881173 -159092967 + LTR40b LTR ERVL 1 320 -142 1292 196 7 29 chrX 17881182 17881458 -159092682 - MLT1D LTR MaLR -2 503 234 518 277 0 0 chrX 17881526 17881638 -159092502 - MLT1D LTR MaLR -411 215 104 * 526 144 124 0 chrX 17881628 17881725 -159092415 + LTR40a LTR ERVL 409 517 -2 300 301 66 49 chrX 17881987 17882170 -159091970 - MER5A DNA MER1_type 0 189 4 1905 136 0 37 chrX 17882283 17882607 -159091533 + AluJo SINE Alu 1 312 0 490 204 76 15 chrX 17883724 17883856 -159090284 + MER91C DNA MER1_type 1 140 0 369 318 27 9 chrX 17884589 17884699 -159089441 + L2 LINE L2 3202 3313 0 279 54 0 0 chrX 17886678 17886715 -159087425 + (TGGA)n Simple_repeat Simple_repeat 3 39 0 180 352 0 0 chrX 17886867 17886921 -159087219 + MIR3 SINE MIR 108 161 -47 205 218 36 0 chrX 17887235 17887290 -159086850 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 * 214 200 0 0 chrX 17887254 17887294 -159086846 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 80 0 0 chrX 17887294 17887319 -159086821 + (TC)n Simple_repeat Simple_repeat 2 26 0 247 200 0 0 chrX 17887326 17887376 -159086764 - L1MC4 LINE L1 -1340 6702 6653 684 239 54 93 chrX 17887820 17888105 -159086035 + MLT1D LTR MaLR 6 276 -258 416 302 17 6 chrX 17888158 17888330 -159085810 - L1ME3A LINE L1 -230 5940 5767 384 77 0 0 chrX 17888378 17888430 -159085710 + (TG)n Simple_repeat Simple_repeat 2 53 0 254 247 52 0 chrX 17888443 17888540 -159085600 - L1M4c LINE L1 -5021 1363 1262 936 217 107 8 chrX 17888584 17888828 -159085312 - MLT1A1 LTR MaLR -97 268 1 9830 183 56 81 chrX 17888829 17890626 -159083514 - L1MCa LINE L1 -2521 3905 2065 2705 70 6 0 chrX 17890626 17890978 -159083162 + L1PA7 LINE L1 5794 6154 0 9830 183 56 81 chrX 17890978 17891005 -159083135 - L1MCa LINE L1 -4361 2065 2039 2180 104 3 3 chrX 17891005 17891314 -159082826 + AluSx SINE Alu 1 309 -3 9830 183 56 81 chrX 17891314 17891487 -159082653 - L1MCa LINE L1 -4387 2039 1863 1133 175 63 5 chrX 17891487 17891710 -159082430 - MER46A DNA MER2_type 0 236 1 9830 183 56 81 chrX 17891710 17892940 -159081200 - L1MCa LINE L1 -4563 1863 798 366 61 0 0 chrX 17892940 17892989 -159081151 + (TG)n Simple_repeat Simple_repeat 2 50 0 9830 183 56 81 chrX 17892989 17893745 -159080395 - L1MCa LINE L1 -5628 798 25 208 338 14 0 chrX 17895899 17895970 -159078170 + MIR SINE MIR 117 188 -74 24 0 0 0 chrX 17896974 17896998 -159077142 + AT_rich Low_complexity Low_complexity 1 24 0 933 321 105 34 chrX 17897419 17898073 -159076067 + L2 LINE L2 2590 3313 0 825 276 142 20 chrX 17899510 17900100 -159074040 + L1ME3A LINE L1 5289 5951 -216 26 0 0 0 chrX 17900325 17900351 -159073789 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chrX 17900431 17900480 -159073660 + AT_rich Low_complexity Low_complexity 1 49 0 241 311 163 15 chrX 17900529 17900664 -159073476 - MIR3 SINE MIR -13 195 41 24 32 0 0 chrX 17902348 17902379 -159071761 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 17902606 17902627 -159071513 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 51 34 chrX 17903234 17903352 -159070788 - L2 LINE L2 -3 3310 3191 212 260 0 20 chrX 17904561 17904611 -159069529 - L2 LINE L2 -61 3211 3163 1570 206 65 5 chrX 17904748 17905117 -159069023 - L1MB7 LINE L1 -9 6175 5785 21 57 0 0 chrX 17905187 17905222 -159068918 + AT_rich Low_complexity Low_complexity 1 35 0 248 330 19 9 chrX 17905347 17905453 -159068687 - MIR SINE MIR -5 257 151 464 270 48 0 chrX 17905454 17905580 -159068560 + MIR SINE MIR 30 161 -101 195 303 172 10 chrX 17905639 17905738 -159068402 - MIR SINE MIR -84 178 64 469 187 22 0 chrX 17906463 17906554 -159067586 - L1MC2 LINE L1 -9 6335 6243 2110 89 3 3 chrX 17906814 17907125 -159067015 + AluSp SINE Alu 1 311 0 6537 110 43 6 chrX 17907359 17908579 -159065561 + L1MA2 LINE L1 5039 6304 0 23 54 0 0 chrX 17908834 17908871 -159065269 + AT_rich Low_complexity Low_complexity 1 37 0 306 223 109 80 chrX 17909014 17909189 -159064951 + L1ME3A LINE L1 2396 2575 -3965 1687 313 86 38 chrX 17909228 17911755 -159062385 + L1ME3A LINE L1 2661 5352 -1188 490 325 49 42 chrX 17912065 17912638 -159061502 + L1ME3A LINE L1 5687 6263 -301 1969 207 52 12 chrX 17912861 17913359 -159060781 - L1 LINE L1 -1599 4547 4030 * 3856 184 23 29 chrX 17913352 17913965 -159060175 + L1MB1 LINE L1 5603 6218 -344 2252 71 41 0 chrX 17913965 17914259 -159059881 - AluYa5 SINE Alu -5 306 1 3856 184 23 29 chrX 17914259 17914484 -159059656 + L1MB1 LINE L1 6218 6438 -124 2171 131 0 0 chrX 17914484 17914796 -159059344 - AluSx SINE Alu 0 312 1 3856 184 23 29 chrX 17914796 17914829 -159059311 + L1MB1 LINE L1 6438 6470 -92 1368 83 14 42 chrX 17914825 17915062 -159059078 + L1PA10 LINE L1 5938 6168 0 * 1148 161 13 101 chrX 17915066 17915364 -159058776 + L1MA10 LINE L1 6060 6331 -3 15382 116 26 12 chrX 17915425 17917810 -159056330 + Tigger1 DNA MER2_type 1 2418 0 589 292 94 29 chrX 17918345 17918622 -159055518 + LTR33A LTR ERVL 1 295 -228 1010 165 34 11 chrX 17918882 17919058 -159055082 - L1M3e LINE L1 -6844 186 7 248 325 65 16 chrX 17919203 17919326 -159054814 - MIR SINE MIR -24 238 110 3272 209 41 19 chrX 17919766 17920597 -159053543 + L1MB7 LINE L1 4142 4990 -1156 581 282 104 32 chrX 17920905 17921214 -159052926 + MLT1H LTR MaLR 219 549 0 3863 184 31 11 chrX 17921218 17922312 -159051828 + L1MB7 LINE L1 4930 6046 -138 776 294 84 3 chrX 17923111 17923410 -159050730 - MER20B DNA MER1_type -405 378 56 477 160 52 3 chrX 17923505 17923841 -159050299 + (TA)n Simple_repeat Simple_repeat 1 352 0 324 176 55 0 chrX 17923907 17924072 -159050068 + (TA)n Simple_repeat Simple_repeat 1 174 0 253 188 29 0 chrX 17924138 17924207 -159049933 + (TA)n Simple_repeat Simple_repeat 2 72 0 200 176 0 39 chrX 17924417 17924468 -159049672 + (TA)n Simple_repeat Simple_repeat 2 50 0 405 0 0 0 chrX 17924574 17924619 -159049521 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 26 30 0 0 chrX 17924628 17924661 -159049479 + AT_rich Low_complexity Low_complexity 1 33 0 230 214 154 17 chrX 17924930 17925047 -159049093 - L1ME4a LINE L1 -18 6103 5971 1565 189 145 22 chrX 17925188 17925224 -159048916 - MLT2D LTR ERVL -4 410 380 684 24 0 0 chrX 17925224 17925306 -159048834 + (TG)n Simple_repeat Simple_repeat 2 83 0 1565 189 145 22 chrX 17925306 17925634 -159048506 - MLT2D LTR ERVL -34 380 1 2007 157 21 0 chrX 17925887 17926264 -159047876 + L1 LINE L1 4462 4846 -1300 6050 130 24 3 chrX 17926270 17927376 -159046764 + L1PA16 LINE L1 5032 6166 0 27 0 0 0 chrX 17928078 17928105 -159046035 + AT_rich Low_complexity Low_complexity 1 27 0 2030 187 40 20 chrX 17928732 17929181 -159044959 - L1MC4 LINE L1 -143 7899 7442 460 343 91 0 chrX 17929690 17929888 -159044252 + MIR SINE MIR 18 233 -29 183 246 115 33 chrX 17929916 17929977 -159044163 + MIR SINE MIR 42 107 -155 246 32 0 0 chrX 17930246 17930277 -159043863 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 319 26 26 chrX 17930693 17930809 -159043331 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 17930948 17930999 -159043141 + AT_rich Low_complexity Low_complexity 1 51 0 186 309 10 62 chrX 17931102 17931199 -159042941 - MIR SINE MIR -76 186 95 2471 248 63 37 chrX 17932288 17932553 -159041587 - L1MEc LINE L1 -3913 2483 2226 1016 152 16 0 chrX 17932553 17932737 -159041403 - L1MA6 LINE L1 -18 6282 6096 2471 248 63 37 chrX 17932737 17933134 -159041006 - L1MEc LINE L1 -4170 2226 1786 1506 202 50 3 chrX 17933134 17933431 -159040709 - AluJb SINE Alu -1 311 1 2471 248 63 37 chrX 17933431 17933730 -159040410 - L1MEc LINE L1 -4610 1786 1496 349 148 16 0 chrX 17933731 17933744 -159040396 - MER46A DNA MER2_type -78 158 145 964 118 35 0 chrX 17933744 17933888 -159040252 + Tigger4(Zombi) DNA MER2_type 1 149 -2582 1357 146 28 32 chrX 17933891 17934144 -159039996 + Tigger4(Zombi) DNA MER2_type 2471 2722 -9 951 259 46 29 chrX 17934163 17934573 -159039567 - L1MEc LINE L1 -4923 1473 1057 1846 251 48 0 chrX 17934596 17935075 -159039065 - L1MEc LINE L1 -5410 986 485 1617 169 42 92 chrX 17935082 17935537 -159038603 - MSTB1 LTR MaLR 0 432 1 400 224 12 0 chrX 17935547 17935632 -159038508 - LTR40a LTR ERVL -4 515 430 850 261 59 33 chrX 17935637 17935882 -159038258 - LTR40b LTR ERVL -181 281 27 1906 146 46 46 chrX 17935882 17936272 -159037868 + MLT1B LTR MaLR 1 390 0 850 261 59 33 chrX 17936272 17936298 -159037842 - LTR40b LTR ERVL -435 27 3 1506 274 24 12 chrX 17936301 17936710 -159037430 - L1MEc LINE L1 -5918 478 65 526 161 8 17 chrX 17937942 17938060 -159036080 + GA-rich Low_complexity Low_complexity 4 120 0 477 247 163 18 chrX 17938090 17938256 -159035884 + MER58A DNA MER1_type 35 224 0 2206 108 0 0 chrX 17938331 17938626 -159035514 - AluSx SINE Alu -17 295 1 269 319 91 58 chrX 17939200 17939492 -159034648 + L2 LINE L2 2888 3266 -47 2149 197 13 50 chrX 17939492 17940016 -159034124 - MLT1D LTR MaLR 0 505 1 269 319 91 58 chrX 17940016 17940061 -159034079 + L2 LINE L2 3266 3308 -5 186 103 0 0 chrX 17940063 17940092 -159034048 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 186 43 0 0 chrX 17940168 17940191 -159033949 + (A)n Simple_repeat Simple_repeat 1 23 0 848 270 0 0 chrX 17940344 17940518 -159033622 - MER5A DNA MER1_type 0 189 16 335 350 76 32 chrX 17940562 17940719 -159033421 + MIR SINE MIR 20 183 -79 42228 32 22 1 chrX 17941224 17947222 -159026918 - L1PA2 LINE L1 -2 6153 26 965 243 40 97 chrX 17947698 17948172 -159025968 + LTR16A1 LTR ERVL 3 449 -8 240 368 9 9 chrX 17948630 17948744 -159025396 + L1ME3A LINE L1 5965 6078 -92 252 300 136 7 chrX 17948988 17949128 -159025012 - L1M4 LINE L1 -1981 4165 4008 721 307 38 71 chrX 17949291 17949896 -159024244 - L1MEd LINE L1 -5213 906 322 25 0 0 0 chrX 17950062 17950087 -159024053 + AT_rich Low_complexity Low_complexity 1 25 0 223 286 48 0 chrX 17950690 17950753 -159023387 + MIR SINE MIR 147 212 -50 352 273 50 50 chrX 17950854 17950993 -159023147 + L2 LINE L2 3173 3311 -2 205 343 0 0 chrX 17951174 17951247 -159022893 + MIR3 SINE MIR 125 197 -11 21 0 0 0 chrX 17952881 17952902 -159021238 + AT_rich Low_complexity Low_complexity 1 21 0 1029 131 0 36 chrX 17953864 17954032 -159020108 - AluSg/x SINE Alu -20 292 131 413 257 125 0 chrX 17954073 17954209 -159019931 + Charlie7 DNA MER1_type 5 157 -2455 2103 119 27 0 chrX 17954299 17954594 -159019546 - AluSx SINE Alu -9 303 1 523 371 38 4 chrX 17954599 17954836 -159019304 + LTR33 LTR ERVL 21 265 -256 1832 162 14 0 chrX 17954837 17955133 -159019007 + AluJb SINE Alu 1 300 -12 385 191 0 27 chrX 17955158 17955184 -159018956 + GA-rich Low_complexity Low_complexity 4 29 -81 2293 93 6 3 chrX 17955184 17955495 -159018645 + AluSq SINE Alu 1 312 -1 385 191 0 27 chrX 17955495 17955578 -159018562 + GA-rich Low_complexity Low_complexity 29 110 0 2743 216 30 16 chrX 17955693 17956388 -159017752 + L1M4 LINE L1 3588 4292 -1854 21 0 0 0 chrX 17956677 17956698 -159017442 + AT_rich Low_complexity Low_complexity 1 21 0 265 215 0 46 chrX 17956724 17956789 -159017351 + MLT1J LTR MaLR 3 64 -447 1705 169 23 10 chrX 17956805 17957112 -159017028 - AluJb SINE Alu -1 311 1 374 339 83 16 chrX 17957147 17957339 -159016801 + MLT1J LTR MaLR 240 444 -67 895 274 71 62 chrX 17958224 17958659 -159015481 + MLT1J LTR MaLR 9 447 -64 341 331 97 32 chrX 17958689 17959227 -159014913 - L1MEc LINE L1 -4589 2018 1446 367 275 70 47 chrX 17959311 17959642 -159014498 - L1MEc LINE L1 -5204 1399 887 239 154 15 31 chrX 17959709 17959774 -159014366 + (TA)n Simple_repeat Simple_repeat 2 65 0 630 112 95 9 chrX 17959774 17959890 -159014250 - L1MC2 LINE L1 -10 6334 6209 189 0 0 0 chrX 17959950 17959971 -159014169 + (CA)n Simple_repeat Simple_repeat 1 21 0 3577 154 11 42 chrX 17960138 17960389 -159013751 + L1M1 LINE L1 4543 4800 -1504 409 187 76 40 chrX 17960389 17960537 -159013603 + LTR19C LTR ERV1 39 227 -552 3577 154 11 42 chrX 17960537 17961454 -159012686 + L1M1 LINE L1 4800 5721 -583 1697 217 111 82 chrX 17961454 17962202 -159011938 - LTR19C LTR ERV1 0 779 7 3762 84 10 29 chrX 17962208 17962789 -159011351 + L1MA1 LINE L1 5733 6302 0 245 325 18 0 chrX 17962970 17963084 -159011056 + L1M4 LINE L1 4460 4575 -1571 268 377 57 0 chrX 17963178 17963284 -159010856 - L2 LINE L2 0 3272 3161 2318 93 3 3 chrX 17963339 17963641 -159010499 + AluSc SINE Alu 1 302 -7 343 289 111 54 chrX 17963893 17964208 -159009932 + L1M4 LINE L1 4933 5265 -881 23 33 0 0 chrX 17964320 17964350 -159009790 + AT_rich Low_complexity Low_complexity 1 30 0 192 226 0 0 chrX 17964380 17964442 -159009698 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 1656 219 99 38 chrX 17965032 17965508 -159008632 + MLT1D LTR MaLR 1 505 0 35 41 0 0 chrX 17966686 17966735 -159007405 + AT_rich Low_complexity Low_complexity 1 49 0 1470 287 83 21 chrX 17967063 17967620 -159006520 - MLT1E LTR MaLR 0 593 3 1196 174 39 130 chrX 17967847 17968256 -159005884 - MLT1A2 LTR MaLR -2 372 1 512 304 99 20 chrX 17968510 17968711 -159005429 + L2 LINE L2 3096 3312 -1 32 0 0 0 chrX 17968740 17968772 -159005368 + AT_rich Low_complexity Low_complexity 1 32 0 2750 231 83 42 chrX 17968862 17969649 -159004491 + MER21B LTR ERV1 20 838 -25 28 29 0 0 chrX 17969737 17969772 -159004368 + AT_rich Low_complexity Low_complexity 1 35 0 1765 226 128 15 chrX 17970603 17971143 -159002997 - MER77 LTR ERV1 -4 601 1 327 276 29 98 chrX 17971719 17971832 -159002308 - MLT1J LTR MaLR -52 459 371 2222 99 0 34 chrX 17971832 17972154 -159001986 - AluSx SINE Alu -1 311 1 327 276 29 98 chrX 17972154 17972286 -159001854 - MLT1J LTR MaLR -140 371 231 593 268 71 25 chrX 17972497 17972852 -159001288 - L1MC4a LINE L1 -158 5963 5588 431 228 54 0 chrX 17973191 17973283 -159000857 - MER5A DNA MER1_type -84 105 9 1533 194 70 141 chrX 17973699 17974287 -158999853 - MLT1E1 LTR MaLR -108 546 1 3210 148 34 37 chrX 17974400 17975044 -158999096 + L1MA7 LINE L1 5650 6291 0 29 0 0 0 chrX 17975067 17975096 -158999044 + AT_rich Low_complexity Low_complexity 1 29 0 1976 218 67 154 chrX 17975100 17977401 -158996739 + L1PB4 LINE L1 2 2142 -4706 14615 102 4 15 chrX 17977507 17979023 -158995117 + L1P LINE L1 709 2195 -3951 2482 52 0 13 chrX 17979023 17979332 -158994808 + AluY SINE Alu 1 305 -6 14615 102 4 15 chrX 17979332 17980029 -158994111 + L1P LINE L1 2195 2898 -3248 371 288 71 35 chrX 17980404 17980602 -158993538 - LTR16A LTR ERVL -169 281 77 212 293 13 53 chrX 17980877 17980952 -158993188 + MIR3 SINE MIR 90 161 -47 2232 115 6 0 chrX 17981201 17981514 -158992626 + L1MC1 LINE L1 5999 6313 -20 6050 228 20 32 chrX 17982306 17983135 -158991005 + L1PB4 LINE L1 2158 2995 -3853 2030 109 39 0 chrX 17983135 17983418 -158990722 + AluSq SINE Alu 3 296 -17 6050 228 20 32 chrX 17983418 17984712 -158989428 + L1PB4 LINE L1 2995 4355 -2493 762 214 16 0 chrX 17984713 17984895 -158989245 + L1PB4 LINE L1 4934 5118 -1730 520 146 0 62 chrX 17985042 17985234 -158988906 + (AGGGGG)n Simple_repeat Simple_repeat 1 180 0 * 645 157 0 0 chrX 17985187 17985321 -158988819 + G-rich Low_complexity Low_complexity 1 134 0 39394 42 29 2 chrX 17985367 17990334 -158983806 + L1P LINE L1 111 5211 -935 2599 80 8 21 chrX 17990442 17990817 -158983323 + L1PB1 LINE L1 5782 6151 0 4973 182 18 6 chrX 17990817 17992175 -158981965 + L1PB4 LINE L1 5112 6498 -360 390 57 0 0 chrX 17992175 17992228 -158981912 + (CA)n Simple_repeat Simple_repeat 2 54 0 4973 182 18 6 chrX 17992228 17992592 -158981548 + L1PB4 LINE L1 6498 6856 -2 25 31 0 0 chrX 17992971 17993003 -158981137 + AT_rich Low_complexity Low_complexity 1 32 0 234 380 35 31 chrX 17993149 17993375 -158980765 + L3 LINE CR1 1332 1558 -19 209 313 40 81 chrX 17994516 17994615 -158979525 + L2 LINE L2 3143 3237 -35 300 303 25 33 chrX 17995031 17995153 -158978987 - MIR SINE MIR -139 123 3 23 33 0 0 chrX 17995816 17995846 -158978294 + AT_rich Low_complexity Low_complexity 1 30 0 364 190 35 58 chrX 17996181 17996355 -158977785 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 1488 58 0 16 chrX 17997920 17998108 -158976032 + AluY SINE Alu 123 307 -4 312 276 54 20 chrX 17998676 17998879 -158975261 + L1MC4 LINE L1 2268 2477 -3669 640 234 13 57 chrX 17999068 17999295 -158974845 - L1M4 LINE L1 -2140 4006 3790 2493 51 0 0 chrX 17999451 17999745 -158974395 + AluY SINE Alu 1 294 -17 22 56 0 0 chrX 17999805 17999841 -158974299 + AT_rich Low_complexity Low_complexity 1 36 0 994 289 93 36 chrX 18000374 18000814 -158973326 + L1MC4 LINE L1 3579 3993 -2153 1453 115 0 10 chrX 18000814 18001023 -158973117 - AluSg/x SINE Alu -6 304 98 994 289 93 36 chrX 18001023 18001496 -158972644 + L1MC4 LINE L1 3993 4544 -1602 1390 116 39 0 chrX 18001549 18001781 -158972359 + L1MA4 LINE L1 6056 6296 -4 549 233 83 99 chrX 18001790 18002366 -158971774 + L1MC4 LINE L1 7459 8025 -17 357 65 0 0 chrX 18002422 18002468 -158971672 - L1MA2 LINE L1 -473 5831 5786 406 300 128 21 chrX 18002539 18003107 -158971033 + L1MC4 LINE L1 5273 5862 -300 202 169 0 34 chrX 18003114 18003173 -158970967 + (TA)n Simple_repeat Simple_repeat 1 57 0 379 289 34 73 chrX 18004185 18004389 -158969751 - MLT1H LTR MaLR -147 402 207 181 259 139 65 chrX 18004758 18004866 -158969274 + L2 LINE L2 3180 3295 -18 918 206 0 11 chrX 18005128 18005303 -158968837 + MER5B DNA MER1_type 1 173 -5 279 0 0 0 chrX 18006908 18006939 -158967201 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 5385 36 2 0 chrX 18006939 18007579 -158966561 - L1PA5 LINE L1 -15 6139 5499 207 167 0 0 chrX 18007726 18007768 -158966372 + (TA)n Simple_repeat Simple_repeat 2 43 0 293 217 35 87 chrX 18007869 18007984 -158966156 - MIR SINE MIR -35 227 119 183 406 0 0 chrX 18008069 18008133 -158966007 - MIR SINE MIR -196 66 3 28 61 0 0 chrX 18009433 18009482 -158964658 + AT_rich Low_complexity Low_complexity 1 49 0 4968 142 22 39 chrX 18009922 18010747 -158963393 - L1PB4 LINE L1 -7 6149 5333 1854 162 0 13 chrX 18010747 18011061 -158963079 - AluJo SINE Alu 0 312 3 4968 142 22 39 chrX 18011061 18011243 -158962897 - L1PB4 LINE L1 -823 5333 5149 260 250 125 0 chrX 18011271 18011327 -158962813 - MER31-int LTR ERV1 -1019 3917 3855 1690 103 45 8 chrX 18011368 18011611 -158962529 + AluSx SINE Alu 52 303 -9 918 113 0 8 chrX 18011615 18011748 -158962392 + L1P LINE L1 11 142 -6004 20998 40 2 1 chrX 18011945 18015347 -158958793 + L1PA5 LINE L1 2745 6152 -2 577 266 65 67 chrX 18015370 18015787 -158958353 - MER31-int LTR ERV1 -1121 3815 3400 1600 148 13 43 chrX 18015862 18016166 -158957974 + AluJo SINE Alu 1 295 -17 346 229 57 105 chrX 18016481 18016691 -158957449 - MER31-int LTR ERV1 -1919 3017 2818 285 237 15 46 chrX 18016786 18016917 -158957223 - MER31-int LTR ERV1 -2185 2751 2625 232 236 0 36 chrX 18017823 18017878 -158956262 + MER34 LTR ERV1 70 122 -420 * 2086 187 58 12 chrX 18017856 18018283 -158955857 + MER39 LTR ERV1 261 707 0 654 236 61 34 chrX 18019487 18019750 -158954390 - LTR37B LTR ERV1 -1 467 198 775 184 164 10 chrX 18020618 18020701 -158953439 + MER44D DNA MER2_type 1 70 -2421 180 0 0 0 chrX 18020701 18020721 -158953419 + (GA)n Simple_repeat Simple_repeat 1 20 0 775 184 164 10 chrX 18020721 18020844 -158953296 + MER44D DNA MER2_type 70 509 -100 234 286 41 0 chrX 18020844 18020942 -158953198 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 446 218 35 0 chrX 18020962 18021049 -158953091 + MER44D DNA MER2_type 498 587 -18 2778 237 165 46 chrX 18021456 18022431 -158951709 + L1MD2 LINE L1 18 1108 -5432 * 5549 225 31 83 chrX 18022416 18023711 -158950429 + L1MD2 LINE L1 3433 4794 -1842 1656 112 134 11 chrX 18023711 18023979 -158950161 + AluSx SINE Alu 2 302 0 5549 225 31 83 chrX 18023979 18024428 -158949712 + L1MD2 LINE L1 4794 5265 -1371 1994 52 0 0 chrX 18024428 18024678 -158949462 - L1PA5 LINE L1 0 6154 5905 5549 225 31 83 chrX 18024678 18025033 -158949107 + L1MD2 LINE L1 5265 5637 -999 1591 174 7 27 chrX 18025033 18025327 -158948813 + AluJo SINE Alu 1 288 -24 5549 225 31 83 chrX 18025327 18026596 -158947544 + L1MD2 LINE L1 5637 6621 -15 1336 181 76 32 chrX 18026597 18026874 -158947266 - AluJo SINE Alu -21 291 3 29 0 0 0 chrX 18027012 18027041 -158947099 + AT_rich Low_complexity Low_complexity 1 29 0 268 302 109 33 chrX 18027068 18027343 -158946797 + HAL1b LINE L1 279 574 -774 1594 208 56 0 chrX 18027471 18027812 -158946328 - MER90 LTR ERV1 -215 360 1 454 253 0 0 chrX 18028375 18028474 -158945666 - MER94 DNA DNA -34 100 2 2223 104 3 3 chrX 18028617 18028914 -158945226 + AluSg SINE Alu 1 297 -13 24 32 0 0 chrX 18029245 18029276 -158944864 + AT_rich Low_complexity Low_complexity 1 31 0 391 173 48 10 chrX 18029276 18029380 -158944760 + L1MA7 LINE L1 6183 6290 -1 413 263 97 70 chrX 18029759 18030172 -158943968 + L1MC/D LINE L1 4282 4705 -1441 30 0 0 0 chrX 18030366 18030396 -158943744 + AT_rich Low_complexity Low_complexity 1 30 0 2225 88 0 36 chrX 18030451 18030758 -158943382 + AluSx SINE Alu 1 296 -16 356 350 47 28 chrX 18030850 18031170 -158942970 + L1MC/D LINE L1 5494 5819 -1989 24 32 0 0 chrX 18031439 18031470 -158942670 + AT_rich Low_complexity Low_complexity 1 31 0 1090 135 0 24 chrX 18031544 18031714 -158942426 - AluSg/x SINE Alu -12 300 135 1469 164 4 0 chrX 18031901 18032157 -158941983 - L1P LINE L1 -1085 5061 4805 * 1507 132 4 0 chrX 18032147 18032390 -158941750 + L1P LINE L1 5057 5300 -846 6609 83 10 0 chrX 18032390 18033359 -158940781 + L1PA11 LINE L1 5197 6174 0 2185 171 81 38 chrX 18033683 18034163 -158939977 + MLT1D LTR MaLR 5 505 0 1507 162 68 145 chrX 18034329 18034886 -158939254 - MER67D LTR ERV1 0 514 1 27 0 0 0 chrX 18035546 18035573 -158938567 + AT_rich Low_complexity Low_complexity 1 27 0 304 235 0 41 chrX 18036280 18036378 -158937762 + HsTC2 DNA Tc2 1 94 -1804 180 0 0 0 chrX 18036763 18036783 -158937357 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 18038083 18038104 -158936036 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 272 318 25 60 chrX 18038261 18038462 -158935678 + HAL1 LINE L1 1259 1452 -1055 331 311 72 62 chrX 18038665 18038970 -158935170 + HAL1b LINE L1 434 741 -607 7252 127 19 24 chrX 18039167 18039884 -158934256 + Tigger3b DNA MER2_type 1 721 -2307 1512 191 17 17 chrX 18039884 18040178 -158933962 + AluJo SINE Alu 1 294 -18 7252 127 19 24 chrX 18040178 18040407 -158933733 + Tigger3b DNA MER2_type 721 950 -2078 2331 88 0 10 chrX 18040407 18040713 -158933427 - AluSq SINE Alu -10 303 1 7252 127 19 24 chrX 18040713 18041003 -158933137 + Tigger3b DNA MER2_type 950 1231 0 21 0 0 0 chrX 18041143 18041164 -158932976 + AT_rich Low_complexity Low_complexity 1 21 0 1836 270 109 60 chrX 18041196 18042535 -158931605 + HAL1 LINE L1 47 1451 -1056 237 267 0 17 chrX 18042789 18042879 -158931261 + G-rich Low_complexity Low_complexity 1 88 0 352 302 94 5 chrX 18043011 18043203 -158930937 + HAL1 LINE L1 1439 1647 -860 191 306 0 0 chrX 18043297 18043346 -158930794 + L2 LINE L2 3262 3310 -3 25 0 0 0 chrX 18044035 18044060 -158930080 + AT_rich Low_complexity Low_complexity 1 25 0 270 365 74 19 chrX 18044188 18044459 -158929681 - MLT1K LTR MaLR -172 416 131 880 311 113 6 chrX 18044494 18044822 -158929318 - LTR16A LTR ERVL -17 433 71 240 278 33 22 chrX 18044928 18045018 -158929122 + C-rich Low_complexity Low_complexity 6 96 0 * 282 269 0 51 chrX 18044953 18045128 -158929012 + CT-rich Low_complexity Low_complexity 2 167 0 892 191 38 0 chrX 18045609 18045766 -158928374 - MER45A DNA AcHobo -4 174 12 2154 188 105 11 chrX 18045991 18046449 -158927691 - MLT1D LTR MaLR -4 501 1 583 184 40 16 chrX 18049486 18049611 -158924529 - MER63 DNA MER1_type -308 754 1 192 268 0 0 chrX 18049650 18049691 -158924449 + MIR SINE MIR 12 52 -210 190 352 0 0 chrX 18049696 18049767 -158924373 + MIR SINE MIR 189 259 -3 348 347 88 25 chrX 18049848 18050165 -158923975 + L2 LINE L2 2612 2948 -366 449 246 80 60 chrX 18050735 18050934 -158923206 - MIR SINE MIR -4 258 56 244 228 0 18 chrX 18051275 18051332 -158922808 - L1ME LINE L1 -307 5814 5759 24 0 0 0 chrX 18052133 18052157 -158921983 + AT_rich Low_complexity Low_complexity 1 24 0 190 349 15 0 chrX 18052600 18052666 -158921474 + MIR SINE MIR 2 68 -194 183 385 0 0 chrX 18052704 18052787 -158921353 - MIR SINE MIR -110 152 70 323 244 231 27 chrX 18053248 18053405 -158920735 + MIR3 SINE MIR 5 187 -21 24 0 0 0 chrX 18054672 18054696 -158919444 + AT_rich Low_complexity Low_complexity 1 24 0 2402 161 39 2 chrX 18055144 18055555 -158918585 + MSTB LTR MaLR 1 426 0 28 29 0 0 chrX 18055875 18055910 -158918230 + AT_rich Low_complexity Low_complexity 1 35 0 390 271 279 0 chrX 18056485 18056625 -158917515 + MIR SINE MIR 84 262 0 5381 107 40 30 chrX 18056989 18058292 -158915848 + L1PA16 LINE L1 4842 6157 -9 21 0 0 0 chrX 18058292 18058313 -158915827 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 18058625 18058656 -158915484 + AT_rich Low_complexity Low_complexity 1 31 0 2167 107 3 17 chrX 18109105 18109404 -158864736 + AluSq SINE Alu 1 295 -18 2124 108 14 0 chrX 18109529 18109815 -158864325 + AluSg SINE Alu 1 290 -20 32 0 0 0 chrX 18109819 18109851 -158864289 + AT_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chrX 18109894 18109920 -158864220 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2207 176 95 6 chrX 18110808 18111280 -158862860 + MER67D LTR ERV1 1 514 0 711 176 93 78 chrX 18111852 18112013 -158862127 + MER3 DNA MER1_type 2 169 -40 2200 95 0 0 chrX 18112013 18112331 -158861809 + AluSp SINE Alu 1 318 0 711 176 93 78 chrX 18112331 18112372 -158861768 + MER3 DNA MER1_type 169 208 -1 804 189 25 61 chrX 18112492 18112688 -158861452 - MER20 DNA MER1_type 0 219 31 256 333 65 0 chrX 18113300 18113408 -158860732 + MIR SINE MIR 20 134 -128 1459 191 8 109 chrX 18114493 18114869 -158859271 + MLT1A1 LTR MaLR 3 340 -25 21 36 0 0 chrX 18115074 18115102 -158859038 + AT_rich Low_complexity Low_complexity 1 28 0 189 175 0 0 chrX 18116043 18116083 -158858057 + GA-rich Low_complexity Low_complexity 2 41 0 2191 89 7 3 chrX 18116428 18116721 -158857419 + AluSx SINE Alu 1 294 -18 416 251 140 39 chrX 18117021 18117397 -158856743 + L1ME LINE L1 5414 5822 -299 1293 274 41 33 chrX 18117536 18118021 -158856119 + L1MDa LINE L1 35 523 -6017 380 318 94 110 chrX 18118132 18118676 -158855464 + L1MDa LINE L1 479 1013 -5527 1872 213 40 51 chrX 18118721 18119327 -158854813 + L1MDa LINE L1 1410 2008 -4532 1923 129 11 0 chrX 18119509 18119795 -158854345 + AluSx SINE Alu 14 302 -10 24 32 0 0 chrX 18120341 18120372 -158853768 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chrX 18120575 18120618 -158853522 + AT_rich Low_complexity Low_complexity 1 43 0 280 325 40 40 chrX 18121275 18121401 -158852739 + MIR3 SINE MIR 10 135 -73 510 166 31 161 chrX 18122505 18122698 -158851442 + MSTB2 LTR MaLR 289 456 -1 963 262 17 8 chrX 18122784 18123021 -158851119 + MSTB1 LTR MaLR 193 431 -1 474 326 27 36 chrX 18123077 18123301 -158850839 - L2 LINE L2 0 3313 3092 459 239 18 9 chrX 18123533 18123642 -158850498 - MER5B DNA MER1_type 0 178 69 273 262 129 36 chrX 18124646 18124871 -158849269 + L1MC5 LINE L1 7280 7525 -436 2404 37 0 20 chrX 18125067 18125392 -158848748 + AluY SINE Alu 1 311 0 1636 182 27 2 chrX 18125968 18126381 -158847759 - L1M2 LINE L1 -743 5403 5025 330 247 49 99 chrX 18126686 18126848 -158847292 + MER5A DNA MER1_type 36 189 0 349 347 59 12 chrX 18127029 18127199 -158846941 - MER5B DNA MER1_type 0 178 1 528 126 0 0 chrX 18127589 18127676 -158846464 + (CA)n Simple_repeat Simple_repeat 2 88 0 262 115 39 0 chrX 18128264 18128316 -158845824 + (TA)n Simple_repeat Simple_repeat 1 54 0 304 210 57 76 chrX 18128555 18128744 -158845396 + L1P5 LINE L1 5334 5512 -654 181 289 0 82 chrX 18128886 18128983 -158845157 + L2 LINE L2 3152 3240 -73 31 58 0 0 chrX 18129035 18129087 -158845053 + AT_rich Low_complexity Low_complexity 1 52 0 4970 173 34 26 chrX 18129102 18129859 -158844281 - L1MA7 LINE L1 -10 6281 5532 2323 93 0 0 chrX 18129859 18130161 -158843979 + AluSc SINE Alu 1 302 -7 4970 173 34 26 chrX 18130161 18131153 -158842987 - L1MA7 LINE L1 -759 5532 4528 2169 64 0 0 chrX 18131216 18131482 -158842658 + AluY SINE Alu 39 304 -7 23 0 0 0 chrX 18131598 18131621 -158842519 + AT_rich Low_complexity Low_complexity 1 23 0 1601 130 8 82 chrX 18131825 18131889 -158842251 + L1MB2 LINE L1 5843 5910 -261 1784 157 82 3 chrX 18131889 18132208 -158841932 + MER2 DNA MER2_type 1 344 0 1601 130 8 82 chrX 18132208 18132496 -158841644 + L1MB2 LINE L1 5910 6169 -2 1433 154 158 0 chrX 18132539 18132850 -158841290 + MER46B DNA MER2_type 2 236 0 26 30 0 0 chrX 18133675 18133708 -158840432 + AT_rich Low_complexity Low_complexity 1 33 0 955 212 4 56 chrX 18133791 18134022 -158840118 + MER20 DNA MER1_type 1 219 0 259 288 0 14 chrX 18135118 18135198 -158838942 + MIR SINE MIR 71 141 -67 2233 109 0 0 chrX 18135485 18135788 -158838352 - AluSx SINE Alu -9 303 1 423 0 0 0 chrX 18135815 18135862 -158838278 + (CA)n Simple_repeat Simple_repeat 2 48 0 469 194 19 0 chrX 18136401 18136509 -158837631 - L1MA9 LINE L1 0 6312 6203 1329 173 23 11 chrX 18136514 18136780 -158837360 + L1 LINE L1 3922 4190 -1956 208 258 16 0 chrX 18137563 18137625 -158836515 + GA-rich Low_complexity Low_complexity 2 64 0 23 33 0 0 chrX 18138272 18138302 -158835838 + AT_rich Low_complexity Low_complexity 1 30 0 285 103 26 39 chrX 18138619 18138697 -158835443 + A-rich Low_complexity Low_complexity 2 78 0 1168 224 0 0 chrX 18139416 18139639 -158834501 - MER58A DNA MER1_type -1 223 1 26 0 0 0 chrX 18139923 18139949 -158834191 + AT_rich Low_complexity Low_complexity 1 26 0 4654 153 21 25 chrX 18140054 18140118 -158834022 + L1PA16 LINE L1 5260 5323 -843 1832 73 61 4 chrX 18140118 18140363 -158833777 + AluY SINE Alu 39 297 -14 4654 153 21 25 chrX 18140363 18141184 -158832956 + L1PA16 LINE L1 5323 6142 -24 2148 116 0 0 chrX 18141314 18141617 -158832523 - AluSx SINE Alu -9 303 1 21 0 0 0 chrX 18141894 18141915 -158832225 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 18142931 18142955 -158831185 + AT_rich Low_complexity Low_complexity 1 24 0 2813 133 123 34 chrX 18142979 18143541 -158830599 - LTR9 LTR ERV1 0 612 1 3156 219 71 115 chrX 18143685 18144121 -158830019 - MER109 Unknown Unknown -750 1682 1228 828 86 36 21 chrX 18144121 18144261 -158829879 - L1MA5 LINE L1 -2 6298 6157 3156 219 71 115 chrX 18144261 18145624 -158828516 - MER109 Unknown Unknown -1204 1228 1 15863 140 37 5 chrX 18145839 18148483 -158825657 - Tigger4(Zombi) DNA MER2_type 0 2731 1 245 299 19 19 chrX 18148970 18149077 -158825063 - HAL1b LINE L1 -1021 327 221 267 300 23 23 chrX 18149442 18149542 -158824598 + CT-rich Low_complexity Low_complexity 3 173 0 1877 137 58 28 chrX 18149628 18149992 -158824148 + THE1C LTR MaLR 1 375 0 9800 123 9 38 chrX 18149995 18151618 -158822522 + THE1C-int LTR MaLR 4 1580 0 1768 146 61 30 chrX 18151619 18151982 -158822158 + THE1C LTR MaLR 2 375 0 447 139 0 0 chrX 18153667 18153753 -158820387 + L1PB1 LINE L1 6065 6150 -1 2021 138 0 0 chrX 18154187 18154484 -158819656 + AluSg SINE Alu 1 297 -13 28 48 0 0 chrX 18154595 18154637 -158819503 + AT_rich Low_complexity Low_complexity 1 42 0 1540 211 52 55 chrX 18155337 18155739 -158818401 + MER92A LTR ERV1 1 401 -11 505 307 48 30 chrX 18155797 18156028 -158818112 - MLT1K LTR MaLR -22 566 332 568 346 9 14 chrX 18156453 18156664 -158817476 - MLT1K LTR MaLR -296 292 83 1523 244 111 19 chrX 18156693 18156884 -158817256 + MER90 LTR ERV1 1 173 -402 2899 110 2 70 chrX 18156884 18157395 -158816745 + L1PA15 LINE L1 5677 6152 -13 1523 244 111 19 chrX 18157395 18157724 -158816416 + MER90 LTR ERV1 173 569 -6 1689 216 136 70 chrX 18159041 18159333 -158814807 - MLT1E1 LTR MaLR -2 652 381 1509 81 25 51 chrX 18159333 18159569 -158814571 - MER30 DNA MER1_type 0 230 1 1689 216 136 70 chrX 18159569 18159888 -158814252 - MLT1E1 LTR MaLR -273 381 1 308 280 93 0 chrX 18160108 18160215 -158813925 - MIR SINE MIR 0 262 146 182 411 14 20 chrX 18160454 18160600 -158813540 + MIR3 SINE MIR 28 172 -36 285 392 88 10 chrX 18160744 18160938 -158813202 + MIR SINE MIR 22 230 -32 315 0 0 0 chrX 18161108 18161143 -158812997 + (TG)n Simple_repeat Simple_repeat 2 36 0 185 309 36 48 chrX 18162285 18162369 -158811771 + MIR3 SINE MIR 121 203 -5 293 306 31 10 chrX 18163224 18163322 -158810818 + LTR67 LTR ERVL 99 198 -359 303 86 66 66 chrX 18163759 18163910 -158810230 + (TTATA)n Simple_repeat Simple_repeat 2 152 0 194 0 39 0 chrX 18163920 18163946 -158810194 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 490 185 0 0 chrX 18163992 18164073 -158810067 - MER58B DNA MER1_type 0 341 261 26 50 0 0 chrX 18164073 18164113 -158810027 + AT_rich Low_complexity Low_complexity 1 40 0 2320 110 3 0 chrX 18164198 18164508 -158809632 + AluSp SINE Alu 1 311 -2 26 64 0 0 chrX 18164943 18164990 -158809150 + AT_rich Low_complexity Low_complexity 1 47 0 232 156 78 109 chrX 18165223 18165287 -158808853 + MLT1L LTR MaLR 1 62 -553 531 256 111 25 chrX 18165348 18165547 -158808593 + MLT1L LTR MaLR 349 564 -51 2356 63 3 0 chrX 18165613 18165927 -158808213 + AluSp SINE Alu 1 315 0 371 314 93 51 chrX 18166579 18166998 -158807142 + L1M4 LINE L1 3874 4321 -1825 884 274 9 5 chrX 18166998 18167221 -158806919 - MER58A DNA MER1_type 0 224 1 371 314 93 51 chrX 18167221 18167327 -158806813 + L1M4 LINE L1 4321 4421 -1725 286 270 86 66 chrX 18167842 18167994 -158806146 - MIR SINE MIR -8 254 100 23 0 0 0 chrX 18168510 18168533 -158805607 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 18168679 18168700 -158805440 + AT_rich Low_complexity Low_complexity 1 21 0 216 159 32 16 chrX 18169028 18169091 -158805049 + (TA)n Simple_repeat Simple_repeat 2 65 0 24 32 0 0 chrX 18169337 18169368 -158804772 + AT_rich Low_complexity Low_complexity 1 31 0 207 250 29 77 chrX 18170566 18170670 -158803470 + MIR3 SINE MIR 103 201 -7 3070 123 7 2 chrX 18170836 18171292 -158802848 + LTR22A LTR ERVK 1 458 0 2456 87 0 0 chrX 18172543 18172854 -158801286 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 18172952 18172974 -158801166 + AT_rich Low_complexity Low_complexity 1 22 0 257 298 0 0 chrX 18172981 18173038 -158801102 - L2 LINE L2 -8 3264 3208 1548 170 61 0 chrX 18173045 18173322 -158800818 - AluJo SINE Alu -14 298 5 2045 135 27 0 chrX 18174542 18174839 -158799301 - AluSx SINE Alu -7 305 1 747 278 63 73 chrX 18175364 18175763 -158798377 - MLT1I LTR MaLR 0 409 15 3053 147 23 0 chrX 18175850 18176120 -158798020 + Tigger1 DNA MER2_type 941 1203 -1215 2299 76 7 13 chrX 18176120 18176423 -158797717 + AluSp SINE Alu 1 301 -12 3053 147 23 0 chrX 18176423 18176668 -158797472 + Tigger1 DNA MER2_type 1203 1468 -950 359 261 79 66 chrX 18177094 18177307 -158796833 + LTR16A1 LTR ERVL 145 378 -113 225 178 0 0 chrX 18178116 18178161 -158795979 + GA-rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chrX 18181135 18181163 -158792977 + AT_rich Low_complexity Low_complexity 1 28 0 2030 138 0 0 chrX 18181243 18181525 -158792615 - AluSx SINE Alu -30 282 1 1789 256 102 26 chrX 18182036 18182652 -158791488 + MLT2F LTR ERVL 1 663 0 279 0 0 0 chrX 18182758 18182789 -158791351 + (CA)n Simple_repeat Simple_repeat 2 32 0 1642 221 60 2 chrX 18182881 18183297 -158790843 - L1MD3 LINE L1 -14 7981 7542 321 26 0 0 chrX 18183320 18183358 -158790782 + (TG)n Simple_repeat Simple_repeat 1 38 0 1178 273 22 20 chrX 18183490 18183897 -158790243 - MLT1I LTR MaLR 0 409 2 312 27 0 0 chrX 18184077 18184114 -158790026 + (TG)n Simple_repeat Simple_repeat 2 38 0 815 284 13 4 chrX 18184879 18185104 -158789036 + LTR16B LTR ERVL 238 464 0 180 333 107 0 chrX 18188404 18188479 -158785661 + L2 LINE L2 3186 3268 -4 331 279 106 0 chrX 18188711 18188815 -158785325 + MIR3 SINE MIR 94 208 0 22 0 0 0 chrX 18188904 18188926 -158785214 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 18189272 18189302 -158784838 + AT_rich Low_complexity Low_complexity 1 30 0 207 288 16 88 chrX 18190229 18190354 -158783786 - MIR SINE MIR -1 207 91 214 327 27 60 chrX 18191018 18191168 -158782972 + MIR SINE MIR 8 152 -110 187 340 21 32 chrX 18191362 18191456 -158782684 + MIR SINE MIR 54 146 -116 449 204 0 9 chrX 18192106 18192214 -158781926 + GA-rich Low_complexity Low_complexity 3 109 0 657 250 49 64 chrX 18192512 18192776 -158781364 + MLT1H LTR MaLR 74 333 -216 4594 128 157 26 chrX 18193066 18194064 -158780076 + MER11B LTR ERVK 1 1232 -4 1556 46 0 0 chrX 18194789 18194983 -158779157 - L1P LINE L1 -1004 5142 4949 5301 26 3 2 chrX 18194983 18195635 -158778505 + L1PA4 LINE L1 5533 6155 0 239 390 65 30 chrX 18195791 18195991 -158778149 + L2 LINE L2 2645 2851 -463 214 307 55 55 chrX 18196039 18196166 -158777974 + L2 LINE L2 2973 3099 -214 2135 141 0 0 chrX 18196462 18196767 -158777373 - AluSx SINE Alu -7 305 1 1800 122 6 97 chrX 18197416 18197736 -158776404 - AluSx SINE Alu -17 295 5 2115 68 0 53 chrX 18197948 18198050 -158776090 + L1PA8 LINE L1 5865 5971 -201 6125 132 21 32 chrX 18198050 18199133 -158775007 - MER11C LTR ERVK 0 1071 1 2115 68 0 53 chrX 18199133 18199352 -158774788 + L1PA8 LINE L1 5971 6169 -3 1402 200 45 99 chrX 18199544 18200028 -158774112 + LTR40b LTR ERVL 2 459 -3 1346 255 60 78 chrX 18200095 18200813 -158773327 - L1ME3A LINE L1 -12 6158 5454 209 425 34 14 chrX 18200991 18201198 -158772942 - L2 LINE L2 -212 3060 2850 285 214 171 0 chrX 18201385 18201455 -158772685 + MIR SINE MIR 97 178 -84 2263 88 3 32 chrX 18202232 18202540 -158771600 - AluSp SINE Alu -14 299 1 1520 149 16 24 chrX 18202833 18203149 -158770991 - MER4A LTR ERV1 -32 632 261 615 141 0 10 chrX 18203149 18203248 -158770892 - MER4A LTR ERV1 -566 98 1 3419 99 46 36 chrX 18203249 18203994 -158770146 - MER4A-int LTR ERV1 0 6598 4188 2177 104 0 13 chrX 18204485 18204784 -158769356 - AluSg SINE Alu -15 295 1 295 298 61 29 chrX 18205314 18205559 -158768581 + L1MEd LINE L1 631 883 -5236 3624 115 15 20 chrX 18205559 18206157 -158767983 + L1MA8 LINE L1 5695 6289 -2 266 39 0 115 chrX 18206209 18206261 -158767879 - MADE1 DNA Mariner -34 46 1 1413 210 135 42 chrX 18206402 18206860 -158767280 - MLT1D LTR MaLR 0 505 5 358 263 101 43 chrX 18207284 18207627 -158766513 + L1MEd LINE L1 1112 1526 -4784 253 377 149 34 chrX 18208039 18209038 -158765102 - L2 LINE L2 -2102 1212 99 764 133 0 0 chrX 18209537 18209650 -158764490 + FLAM_C SINE Alu 13 125 -18 3019 53 0 0 chrX 18210193 18210571 -158763569 + L1PA8 LINE L1 5794 6171 -1 423 330 72 5 chrX 18210915 18211109 -158763031 - MIR SINE MIR -54 208 2 351 312 0 51 chrX 18211401 18211558 -158762582 + (CATATA)n Simple_repeat Simple_repeat 5 153 0 249 214 0 0 chrX 18211564 18211620 -158762520 - L1MC4 LINE L1 -1339 6703 6648 352 200 78 38 chrX 18212770 18212918 -158761222 - HsTC2 DNA Tc2 -5 1893 35 250 311 7 82 chrX 18213001 18213136 -158761004 - MLT1J2 LTR MaLR -128 322 198 291 54 0 0 chrX 18213146 18213183 -158760957 + (GA)n Simple_repeat Simple_repeat 2 38 0 276 222 0 14 chrX 18213642 18213714 -158760426 + (TA)n Simple_repeat Simple_repeat 2 72 0 1293 203 88 88 chrX 18214099 18214681 -158759459 + L1MC4 LINE L1 7460 8041 -1 43 20 0 0 chrX 18215048 18215098 -158759042 + AT_rich Low_complexity Low_complexity 1 50 0 378 281 26 17 chrX 18215116 18215267 -158758873 - MIR SINE MIR -62 146 2 23 0 0 0 chrX 18215286 18215309 -158758831 + AT_rich Low_complexity Low_complexity 1 23 0 801 222 61 17 chrX 18215976 18216156 -158757984 - MER5A DNA MER1_type -1 188 1 885 199 68 0 chrX 18216320 18216511 -158757629 - MER3 DNA MER1_type 0 209 6 326 80 20 0 chrX 18216659 18216709 -158757431 + (CA)n Simple_repeat Simple_repeat 1 51 0 2554 196 46 61 chrX 18217477 18217719 -158756421 + MLT1E3 LTR MaLR 1 245 -379 1662 102 0 15 chrX 18217719 18217983 -158756157 + L1MA2 LINE L1 6039 6298 -6 2554 196 46 61 chrX 18217983 18218401 -158755739 + MLT1E3 LTR MaLR 245 622 -2 26 50 0 0 chrX 18218985 18219025 -158755115 + AT_rich Low_complexity Low_complexity 1 40 0 181 319 14 28 chrX 18219252 18219324 -158754816 - MER5A DNA MER1_type -115 74 4 483 298 11 28 chrX 18219480 18219658 -158754482 + MER5A DNA MER1_type 2 176 -13 747 201 18 0 chrX 18220482 18220646 -158753494 - MER53 DNA DNA 0 189 23 312 280 47 9 chrX 18220650 18220757 -158753383 + MIR SINE MIR 122 232 -30 640 285 21 43 chrX 18222293 18222413 -158751727 - MIR SINE MIR -14 248 134 2035 100 14 0 chrX 18222413 18222703 -158751437 + AluY SINE Alu 1 294 -17 640 285 21 43 chrX 18222703 18222817 -158751323 - MIR SINE MIR -128 134 19 258 264 104 72 chrX 18223000 18223125 -158751015 - L2 LINE L2 -7 3306 3178 22 0 0 0 chrX 18226967 18226989 -158747151 + AT_rich Low_complexity Low_complexity 1 22 0 2179 259 69 14 chrX 18227104 18227773 -158746367 + L1ME3 LINE L1 5457 6162 0 24 32 0 0 chrX 18228014 18228045 -158746095 + AT_rich Low_complexity Low_complexity 1 31 0 1404 221 13 48 chrX 18228594 18228969 -158745171 + MLT1A1 LTR MaLR 4 365 0 883 361 82 16 chrX 18230165 18230738 -158743402 + L2 LINE L2 799 1409 -1905 6719 21 0 0 chrX 18230777 18231552 -158742588 - L1PA2 LINE L1 -5 6150 5376 708 330 108 44 chrX 18231554 18231852 -158742288 + L2 LINE L2 1390 1668 -1646 694 294 95 33 chrX 18231852 18232273 -158741867 - MLT1J2 LTR MaLR -1 449 3 708 330 108 44 chrX 18232273 18232746 -158741394 + L2 LINE L2 1668 2210 -1104 507 336 118 46 chrX 18232766 18233274 -158740866 + L2 LINE L2 2553 3085 -228 971 287 101 17 chrX 18233277 18233632 -158740508 - LTR16C LTR ERVL 0 491 107 342 333 63 39 chrX 18233806 18234013 -158740127 + L2 LINE L2 3101 3312 -1 409 342 6 37 chrX 18236152 18236313 -158737827 + L2 LINE L2 3153 3308 -5 26 30 0 0 chrX 18236784 18236817 -158737323 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chrX 18237850 18237888 -158736252 + AT_rich Low_complexity Low_complexity 1 38 0 3086 214 59 44 chrX 18237889 18238850 -158735290 - L1ME1 LINE L1 -21 6145 5174 341 294 40 57 chrX 18239023 18239200 -158734940 - L1MCc LINE L1 -6247 694 19 3273 190 25 20 chrX 18239222 18239928 -158734212 - MER67C LTR ERV1 0 710 1 384 339 0 70 chrX 18239965 18240151 -158733989 - MIR SINE MIR -56 206 34 912 267 202 20 chrX 18240403 18241004 -158733136 - L2 LINE L2 0 3313 2603 26 30 0 0 chrX 18242052 18242085 -158732055 + AT_rich Low_complexity Low_complexity 1 33 0 193 350 85 28 chrX 18242421 18242598 -158731542 - MIR3 SINE MIR -13 195 9 218 310 99 42 chrX 18243064 18243206 -158730934 - L2 LINE L2 -11 3302 3153 1006 280 109 37 chrX 18244433 18244890 -158729250 + LTR16C LTR ERVL 1 490 -1 1093 267 36 22 chrX 18245280 18245762 -158728378 - MLT1H LTR MaLR 0 549 29 21 36 0 0 chrX 18245858 18245886 -158728254 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chrX 18247014 18247045 -158727095 + AT_rich Low_complexity Low_complexity 1 31 0 207 194 0 0 chrX 18247315 18247351 -158726789 + (CATA)n Simple_repeat Simple_repeat 3 38 0 533 227 134 26 chrX 18247590 18247755 -158726385 + MER5A DNA MER1_type 4 189 0 614 193 143 6 chrX 18248025 18248186 -158725954 - MER3 DNA MER1_type -22 187 5 389 367 38 0 chrX 18248467 18248625 -158725515 + MIR3 SINE MIR 30 193 -15 225 321 152 51 chrX 18249176 18249413 -158724727 - L2 LINE L2 -185 3087 2827 1018 70 0 14 chrX 18249921 18250064 -158724076 - AluY SINE Alu 0 311 171 693 129 0 17 chrX 18250164 18250280 -158723860 + AluSg/x SINE Alu 191 304 -8 286 250 122 32 chrX 18250281 18250469 -158723671 + L1MDa LINE L1 2008 2212 -4328 1400 60 0 0 chrX 18250469 18250635 -158723505 + AluY SINE Alu 9 174 -137 1011 70 0 0 chrX 18250799 18250927 -158723213 + AluY SINE Alu 172 299 -12 4312 161 100 37 chrX 18250936 18251808 -158722332 + L1MD1 LINE L1 5106 6077 -165 2101 79 0 0 chrX 18251808 18252073 -158722067 - AluSg SINE Alu -10 300 36 4312 161 100 37 chrX 18252073 18252251 -158721889 + L1MD1 LINE L1 6077 6242 0 642 278 19 42 chrX 18252252 18252515 -158721625 + MIR SINE MIR 2 258 -4 29 60 0 0 chrX 18252833 18252883 -158721257 + AT_rich Low_complexity Low_complexity 1 50 0 1439 179 28 92 chrX 18253426 18253816 -158720324 + MLT1A1 LTR MaLR 1 365 0 1415 196 20 43 chrX 18254387 18254734 -158719406 + L1MA9 LINE L1 5936 6274 -38 2276 92 0 7 chrX 18254827 18255133 -158719007 + AluSp SINE Alu 2 305 -8 387 0 0 0 chrX 18255375 18255418 -158718722 + (TA)n Simple_repeat Simple_repeat 1 43 0 267 368 45 15 chrX 18255645 18255778 -158718362 - L2 LINE L2 -189 3083 2947 431 390 62 31 chrX 18255853 18256240 -158717900 - L2 LINE L2 -449 2865 2467 1768 211 36 28 chrX 18256240 18256721 -158717419 - MLT1F1 LTR MaLR -11 556 37 268 345 184 18 chrX 18256961 18257303 -158716837 - L2 LINE L2 -1064 2250 1852 789 267 71 8 chrX 18257354 18257594 -158716546 - LTR33A LTR ERVL 0 523 269 363 231 87 104 chrX 18257659 18257832 -158716308 - LTR33A LTR ERVL -350 173 4 247 356 31 25 chrX 18258362 18258522 -158715618 + MLT1L LTR MaLR 1 161 -454 213 39 0 0 chrX 18258894 18258920 -158715220 + (TG)n Simple_repeat Simple_repeat 2 27 0 2187 110 0 13 chrX 18258950 18259251 -158714889 - AluSx SINE Alu -15 297 1 1361 93 44 0 chrX 18259253 18259478 -158714662 - L1MA7 LINE L1 0 6291 6057 252 0 0 0 chrX 18260663 18260691 -158713449 + (T)n Simple_repeat Simple_repeat 1 28 0 5825 144 20 5 chrX 18261711 18262677 -158711463 - L1MA8 LINE L1 -4 6287 5308 2996 188 11 40 chrX 18262680 18263334 -158710806 + L1MA8 LINE L1 4663 5297 -849 2827 132 16 27 chrX 18263454 18263893 -158710247 - Tigger2a DNA MER2_type 0 434 1 579 227 20 7 chrX 18265203 18265353 -158708787 + L1MC4a LINE L1 6170 6321 -1487 429 309 65 53 chrX 18266348 18266860 -158707280 + L1MC4a LINE L1 5389 5804 -358 5138 83 52 0 chrX 18267616 18268268 -158705872 + LTR12 LTR ERV1 1 686 -2 395 339 81 21 chrX 18268733 18268969 -158705171 + MIR SINE MIR 13 262 0 1617 166 42 89 chrX 18272521 18272924 -158701216 - MLT1B LTR MaLR -5 385 2 21 0 0 0 chrX 18273305 18273326 -158700814 + AT_rich Low_complexity Low_complexity 1 21 0 229 313 57 34 chrX 18273430 18273695 -158700445 - L1M4 LINE L1 -2122 4024 3754 661 264 15 0 chrX 18273830 18274027 -158700113 + L1MD3 LINE L1 7788 7987 -8 1479 269 44 56 chrX 18274049 18274617 -158699523 + L1MC3 LINE L1 3 563 -5482 3093 248 102 30 chrX 18274723 18276504 -158697636 + L1MC3 LINE L1 571 2593 -4152 2002 134 0 0 chrX 18276504 18276781 -158697359 + AluJb SINE Alu 1 277 -35 3093 248 102 30 chrX 18276781 18276941 -158697199 + L1MC3 LINE L1 2593 2740 -4005 1767 139 35 19 chrX 18276944 18277260 -158696880 + L1MC2 LINE L1 6023 6343 -1 2322 66 0 17 chrX 18278078 18278405 -158695735 + AluY SINE Alu 1 322 0 8685 241 64 20 chrX 18278570 18281482 -158692658 + L1MC3 LINE L1 2690 5729 -835 1338 241 62 42 chrX 18281487 18281940 -158692200 + MLT1C LTR MaLR 6 467 0 4806 211 108 6 chrX 18281954 18283210 -158690930 + L1MC3 LINE L1 5738 7120 -1083 820 196 27 11 chrX 18283207 18283332 -158690808 + L1MC3 LINE L1 7348 7478 -725 * 2315 90 0 0 chrX 18283332 18283620 -158690520 - AluSc SINE Alu -19 290 3 820 196 27 11 chrX 18283620 18283678 -158690462 + L1MC3 LINE L1 7478 7534 -669 364 222 101 0 chrX 18283675 18283774 -158690366 + L1MC3 LINE L1 8095 8203 0 * 243 150 25 0 chrX 18285953 18285993 -158688147 - Charlie3 DNA MER1_type -315 2395 2355 558 318 46 38 chrX 18286008 18286508 -158687632 + L1MC4a LINE L1 5403 5906 -1902 23 0 0 0 chrX 18286574 18286597 -158687543 + AT_rich Low_complexity Low_complexity 1 23 0 256 331 103 7 chrX 18286807 18286932 -158687208 - MLT1J2 LTR MaLR -34 416 279 252 152 65 0 chrX 18286932 18286978 -158687162 - MER61E LTR ERV1 -3 566 518 2325 103 7 0 chrX 18287269 18287579 -158686561 - AluSx SINE Alu 0 312 1 1658 254 53 54 chrX 18287921 18288045 -158686095 + MLT1E2 LTR MaLR 3 126 -500 3930 71 6 48 chrX 18288045 18288583 -158685557 - L1PA13 LINE L1 0 6163 5649 1658 254 53 54 chrX 18288583 18289083 -158685057 + MLT1E2 LTR MaLR 126 626 0 281 314 43 57 chrX 18289938 18290078 -158684062 + MIR3 SINE MIR 5 142 -66 1376 182 103 30 chrX 18291121 18291451 -158682689 + MLT1A1 LTR MaLR 1 354 -11 2116 104 34 0 chrX 18295669 18295966 -158678174 - AluSx SINE Alu -5 307 1 392 321 14 20 chrX 18297400 18297648 -158676492 + L1MC4a LINE L1 5665 5786 -376 349 283 92 13 chrX 18297921 18298073 -158676067 - MLT1J2 LTR MaLR -17 433 270 331 296 107 12 chrX 18298113 18298289 -158675851 - MLT1I LTR MaLR -209 200 1 1907 252 44 54 chrX 18298781 18299411 -158674729 + MLT1E2 LTR MaLR 3 626 0 1347 225 85 13 chrX 18300924 18301240 -158672900 + MSTD LTR MaLR 58 396 0 1656 169 30 10 chrX 18301578 18301873 -158672267 + AluJb SINE Alu 7 307 -5 200 293 0 0 chrX 18302104 18302162 -158671978 + L2 LINE L2 3214 3271 -1 2461 91 0 0 chrX 18302309 18302616 -158671524 - AluY SINE Alu -4 307 1 999 196 0 0 chrX 18307651 18307809 -158666331 + FRAM SINE Alu 2 159 -7 26 0 0 0 chrX 18308056 18308082 -158666058 + AT_rich Low_complexity Low_complexity 1 26 0 342 317 111 42 chrX 18308147 18308453 -158665687 - MLT1I LTR MaLR -49 360 34 2283 246 22 30 chrX 18309001 18309632 -158664508 + MLT1E2 LTR MaLR 1 626 0 243 332 124 20 chrX 18310540 18310742 -158663398 + MIR SINE MIR 40 262 0 1057 142 0 0 chrX 18311107 18311255 -158662885 + L1PA8A LINE L1 5966 6113 -18 180 233 128 23 chrX 18311639 18311725 -158662415 + L2 LINE L2 2880 2974 -339 218 287 23 58 chrX 18311823 18311910 -158662230 + L2 LINE L2 3187 3270 -2 1328 94 70 9 chrX 18314910 18315123 -158659017 - pTR5 LTR ERV1 -2041 397 172 363 220 11 0 chrX 18315126 18315217 -158658923 - LTR30 LTR ERV1 -80 642 551 3979 153 122 36 chrX 18315219 18316197 -158657943 - pTR5 LTR ERV1 -408 2030 741 799 204 11 27 chrX 18318183 18318369 -158655771 + AluJo SINE Alu 41 223 -89 189 0 0 0 chrX 18318402 18318423 -158655717 + (TAA)n Simple_repeat Simple_repeat 2 22 0 207 88 0 0 chrX 18318626 18318660 -158655480 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 838 231 116 91 chrX 18318941 18319758 -158654382 - L1MC5 LINE L1 -34 7927 7090 360 263 125 13 chrX 18319882 18320114 -158654026 - L1M4 LINE L1 -2923 3223 2966 584 329 90 46 chrX 18320442 18320922 -158653218 - LTR33A LTR ERVL -20 503 3 554 231 208 11 chrX 18320954 18321214 -158652926 + L1ME1 LINE L1 3880 4190 -1956 * 2976 235 63 11 chrX 18321198 18321592 -158652548 + L1ME1 LINE L1 4526 4898 -1268 188 86 29 0 chrX 18321592 18321627 -158652513 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 2976 235 63 11 chrX 18321627 18322752 -158651388 + L1ME1 LINE L1 4898 6120 -46 267 235 41 100 chrX 18322786 18322956 -158651184 + L1ME2 LINE L1 5928 6087 -77 4829 41 0 0 chrX 18323160 18323741 -158650399 - L1PA4 LINE L1 -2 6153 5573 2773 54 92 0 chrX 18323741 18324110 -158650030 - L1P LINE L1 -5742 404 2 1214 80 0 0 chrX 18324457 18324607 -158649533 + AluSg1 SINE Alu 1 150 -159 1287 173 0 30 chrX 18324620 18324851 -158649289 - AluJo SINE Alu -76 236 13 1076 172 19 184 chrX 18325218 18325630 -158648510 - LTR40b LTR ERVL 0 462 119 2600 44 0 0 chrX 18325752 18326071 -158648069 - L1PA4 LINE L1 -3 6152 5834 26 0 0 0 chrX 18326308 18326334 -158647806 + AT_rich Low_complexity Low_complexity 1 26 0 1670 106 0 0 chrX 18327585 18327802 -158646338 + AluSg/x SINE Alu 72 288 -22 32 0 0 0 chrX 18327807 18327839 -158646301 + AT_rich Low_complexity Low_complexity 1 32 0 221 297 95 14 chrX 18328086 18328160 -158645980 + L2 LINE L2 3189 3268 -4 21 36 0 0 chrX 18329627 18329655 -158644485 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrX 18329753 18329795 -158644345 + AT_rich Low_complexity Low_complexity 1 42 0 42 36 0 0 chrX 18329823 18329879 -158644261 + AT_rich Low_complexity Low_complexity 1 56 0 1345 99 0 0 chrX 18329879 18330050 -158644090 - AluSg/x SINE Alu -27 285 115 712 176 15 0 chrX 18330051 18330182 -158643958 - FLAM_A SINE Alu 0 133 1 624 177 0 32 chrX 18330424 18330548 -158643592 - L1ME3A LINE L1 -6 6147 6028 251 294 34 34 chrX 18330612 18330731 -158643409 - L1ME3A LINE L1 -137 6016 5898 355 285 0 9 chrX 18330749 18330907 -158643233 - L1ME3A LINE L1 -758 5371 5217 867 299 42 3 chrX 18330973 18331328 -158642812 - L1ME3A LINE L1 -1038 5091 4723 1367 251 64 108 chrX 18331414 18332574 -158641566 - L1ME3A LINE L1 -1990 4139 2929 2359 97 0 3 chrX 18332574 18332884 -158641256 - AluSg SINE Alu -1 309 1 1367 251 64 108 chrX 18332884 18333433 -158640707 - L1ME3A LINE L1 -3200 2929 2531 2122 106 3 0 chrX 18333433 18333748 -158640392 - AluSx SINE Alu 0 317 2 1367 251 64 108 chrX 18333748 18334073 -158640067 - L1ME3A LINE L1 -3598 2531 2193 332 267 70 32 chrX 18334160 18334347 -158639793 - L1ME3A LINE L1 -4179 2131 1938 580 288 104 49 chrX 18334460 18335487 -158638653 - L1MEd LINE L1 -4567 1562 487 21 0 0 0 chrX 18336678 18336699 -158637441 + AT_rich Low_complexity Low_complexity 1 21 0 719 287 74 46 chrX 18338003 18338435 -158635705 - LTR33A LTR ERVL 0 523 80 23 0 0 0 chrX 18338595 18338618 -158635522 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 18338726 18338748 -158635392 + AT_rich Low_complexity Low_complexity 1 22 0 560 298 96 71 chrX 18338757 18339166 -158634974 + L1ME LINE L1 3914 4311 -1835 2165 77 37 27 chrX 18339166 18339465 -158634675 + AluSx SINE Alu 1 302 -10 560 298 96 71 chrX 18339465 18339858 -158634282 + L1ME LINE L1 4311 4736 -1410 415 276 32 94 chrX 18340656 18341029 -158633111 + HAL1 LINE L1 813 1162 -1345 331 295 101 41 chrX 18341063 18341429 -158632711 + HAL1 LINE L1 1265 1652 -855 21 36 0 0 chrX 18342166 18342194 -158631946 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 18342589 18342624 -158631516 + AT_rich Low_complexity Low_complexity 1 35 0 241 242 66 11 chrX 18342809 18342900 -158631240 - L1MA9 LINE L1 0 6312 6217 390 321 53 34 chrX 18343194 18343456 -158630684 + L1ME LINE L1 5512 5778 -343 180 0 0 0 chrX 18343474 18343494 -158630646 + (A)n Simple_repeat Simple_repeat 1 20 0 694 193 167 66 chrX 18345169 18345397 -158628743 - MIR SINE MIR -1 261 11 27 49 0 0 chrX 18345939 18345980 -158628160 + AT_rich Low_complexity Low_complexity 1 41 0 256 247 53 105 chrX 18346853 18347043 -158627097 + HsTC2 DNA Tc2 94 273 -1625 24 67 0 0 chrX 18347063 18347108 -158627032 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chrX 18347247 18347275 -158626865 + AT_rich Low_complexity Low_complexity 1 28 0 524 304 129 38 chrX 18347442 18347921 -158626219 + L2 LINE L2 2738 3311 -2 333 203 0 0 chrX 18348933 18348992 -158625148 + MER69 DNA AcHobo 1 59 -2467 288 0 0 0 chrX 18349132 18349164 -158624976 + (CA)n Simple_repeat Simple_repeat 2 33 0 323 235 20 31 chrX 18349170 18349268 -158624872 + MER69 DNA AcHobo 2430 2526 0 325 213 27 120 chrX 18349609 18349759 -158624381 - L1MB8 LINE L1 -8 6170 6035 22 56 0 0 chrX 18349783 18349819 -158624321 + AT_rich Low_complexity Low_complexity 1 36 0 273 368 7 35 chrX 18349871 18350015 -158624125 + L2 LINE L2 1868 2007 -1307 333 308 14 14 chrX 18350298 18350441 -158623699 + MLT1J LTR MaLR 324 466 -45 204 40 0 0 chrX 18350849 18350874 -158623266 + (TC)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 18352503 18352525 -158621615 + AT_rich Low_complexity Low_complexity 1 22 0 541 266 79 23 chrX 18353600 18353777 -158620363 - MLT1J2 LTR MaLR -263 187 1 1839 225 74 50 chrX 18354159 18354684 -158619456 + MLT1F1 LTR MaLR 1 563 -4 533 302 54 61 chrX 18354912 18355336 -158618804 + L1M4 LINE L1 2880 3300 -2846 249 332 32 28 chrX 18355341 18355591 -158618549 + L1M4 LINE L1 4039 4289 -1857 1936 136 0 26 chrX 18356305 18356615 -158617525 - AluJo SINE Alu -10 302 1 647 326 120 22 chrX 18356669 18357221 -158616919 + L2 LINE L2 1272 1877 -1437 3636 211 109 73 chrX 18357703 18358268 -158615872 - L1MC3 LINE L1 -22 7763 7220 396 203 0 25 chrX 18358268 18358347 -158615793 - MLT1F1 LTR MaLR -456 111 35 3636 211 109 73 chrX 18358347 18358854 -158615286 - L1MC3 LINE L1 -565 7220 6571 403 92 59 8 chrX 18358900 18359019 -158615121 + (TA)n Simple_repeat Simple_repeat 2 126 0 1509 171 9 73 chrX 18359019 18359347 -158614793 + LTR1 LTR ERV1 479 785 0 1821 234 22 33 chrX 18359347 18359898 -158614242 - L1MC3 LINE L1 -1210 6575 6031 309 19 75 0 chrX 18360363 18360416 -158613724 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 39907 58 4 7 chrX 18360416 18366564 -158607576 - L1PA5 LINE L1 -13 6141 12 8404 144 10 8 chrX 18367418 18368888 -158605252 - Tigger1 DNA MER2_type -3 2415 942 2484 159 19 7 chrX 18368892 18369313 -158604827 + MSTB LTR MaLR 1 426 0 1818 109 39 0 chrX 18369327 18369584 -158604556 + AluSg SINE Alu 5 271 -39 324 70 0 0 chrX 18369585 18369628 -158604512 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 8224 182 35 8 chrX 18369632 18371227 -158602913 + MSTB-int LTR MaLR 1 1638 -13 2129 173 29 26 chrX 18371243 18371664 -158602476 + MSTB LTR MaLR 5 426 0 4275 131 22 8 chrX 18371664 18372382 -158601758 - Tigger1 DNA MER2_type -1476 942 215 1244 164 80 27 chrX 18372386 18372649 -158601491 + AluJo SINE Alu 21 297 -15 1177 153 18 26 chrX 18372649 18372878 -158601262 - Tigger1 DNA MER2_type -2190 228 2 246 116 0 0 chrX 18372897 18372940 -158601200 + (GA)n Simple_repeat Simple_repeat 1 43 0 2208 95 0 22 chrX 18373175 18373492 -158600648 - AluSg SINE Alu 0 310 1 462 36 0 0 chrX 18373841 18373897 -158600243 + (TG)n Simple_repeat Simple_repeat 2 57 0 1539 241 94 74 chrX 18374002 18374650 -158599490 - MLT2F LTR ERVL 0 663 3 21 36 0 0 chrX 18375204 18375232 -158598908 + AT_rich Low_complexity Low_complexity 1 28 0 265 275 0 12 chrX 18376141 18376221 -158597919 + GA-rich Low_complexity Low_complexity 2 80 0 603 168 0 0 chrX 18377814 18377933 -158596207 + CT-rich Low_complexity Low_complexity 2 120 0 749 174 22 16 chrX 18378833 18379017 -158595123 - MER53 DNA DNA 0 189 5 372 238 155 33 chrX 18379566 18379747 -158594393 + L1ME3A LINE L1 5679 5881 -289 1738 188 38 5 chrX 18380147 18380515 -158593625 - MSTB LTR MaLR 0 426 47 21 0 0 0 chrX 18380559 18380580 -158593560 + AT_rich Low_complexity Low_complexity 1 21 0 2040 130 3 3 chrX 18381117 18381451 -158592689 + AluSx SINE Alu 1 334 0 2058 128 10 0 chrX 18381455 18381753 -158592387 + AluSx SINE Alu 1 301 -11 915 182 0 35 chrX 18381890 18382083 -158592057 + AluJb SINE Alu 129 312 0 2130 102 0 3 chrX 18382581 18382866 -158591274 - AluSx SINE Alu -28 284 1 24 32 0 0 chrX 18383153 18383184 -158590956 + AT_rich Low_complexity Low_complexity 1 31 0 314 130 19 0 chrX 18383844 18383898 -158590242 - MSTB LTR MaLR -377 55 1 1174 308 53 35 chrX 18384117 18384933 -158589207 - L2 LINE L2 0 3313 2481 3165 306 95 19 chrX 18385330 18386770 -158587370 - L2 LINE L2 -838 2476 927 249 361 0 0 chrX 18387197 18387258 -158586882 - L2 LINE L2 -94 3178 3118 2442 181 31 2 chrX 18387904 18388412 -158585728 - Charlie1b DNA MER1_type 0 523 1 243 324 65 14 chrX 18388639 18388778 -158585362 + L2 LINE L2 3167 3312 -1 22 56 0 0 chrX 18389231 18389267 -158584873 + AT_rich Low_complexity Low_complexity 1 36 0 1712 195 3 8 chrX 18390889 18391264 -158582876 - L1 LINE L1 -1930 4216 3844 * 3021 196 35 78 chrX 18391263 18391996 -158582144 + L1MA6 LINE L1 4793 5557 -743 2274 84 3 0 chrX 18391996 18392283 -158581857 + AluY SINE Alu 1 288 -23 3021 196 35 78 chrX 18392283 18392635 -158581505 + L1MA6 LINE L1 5557 5794 -506 291 54 0 0 chrX 18392635 18392672 -158581468 + (CA)n Simple_repeat Simple_repeat 2 38 0 3021 196 35 78 chrX 18392672 18393134 -158581006 + L1MA6 LINE L1 5794 6275 -25 427 261 8 157 chrX 18393155 18393423 -158580717 + MIR SINE MIR 35 262 0 1117 218 102 72 chrX 18393433 18393726 -158580414 + MLT1A2 LTR MaLR 1 309 -65 1710 106 50 90 chrX 18393726 18394047 -158580093 - AluSx SINE Alu -4 308 1 1117 218 102 72 chrX 18394047 18394116 -158580024 + MLT1A2 LTR MaLR 309 374 0 21 0 0 0 chrX 18394331 18394352 -158579788 + AT_rich Low_complexity Low_complexity 1 21 0 2106 97 3 10 chrX 18394443 18394732 -158579408 + AluSq SINE Alu 12 298 -15 798 94 39 0 chrX 18394739 18394899 -158579241 + L1MB1 LINE L1 6033 6197 0 1898 192 11 3 chrX 18395313 18395673 -158578467 + MLT1A1 LTR MaLR 1 363 -2 597 248 4 62 chrX 18395683 18395909 -158578231 + L1ME1 LINE L1 5947 6159 -7 615 313 132 57 chrX 18396163 18396680 -158577460 - L2 LINE L2 -4 3309 2755 234 0 0 0 chrX 18396810 18396836 -158577304 + (CAA)n Simple_repeat Simple_repeat 2 27 0 749 216 92 80 chrX 18397168 18397691 -158576449 + L1ME3A LINE L1 4322 4850 -1296 306 272 160 16 chrX 18397723 18397848 -158576292 + L1ME3A LINE L1 5049 5191 -955 1665 254 75 13 chrX 18397930 18398679 -158575461 + L1ME3A LINE L1 5319 6123 -39 271 227 171 0 chrX 18398729 18398817 -158575323 + MIR SINE MIR 155 257 -5 28 61 0 0 chrX 18399271 18399320 -158574820 + AT_rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chrX 18399407 18399434 -158574706 + AT_rich Low_complexity Low_complexity 1 27 0 24 91 0 0 chrX 18399558 18399624 -158574516 + AT_rich Low_complexity Low_complexity 1 66 0 22 35 0 0 chrX 18400048 18400077 -158574063 + AT_rich Low_complexity Low_complexity 1 29 0 1270 271 62 25 chrX 18401151 18401797 -158572343 - L1MC4a LINE L1 -1874 5934 5265 235 275 12 0 chrX 18401965 18402045 -158572095 - L1MC4a LINE L1 -1563 4583 4503 456 330 74 26 chrX 18402082 18402433 -158571707 - L1MC4a LINE L1 -1712 4434 4067 1329 206 41 46 chrX 18402506 18402874 -158571266 + MER47A DNA MER2_type 1 366 0 372 318 84 43 chrX 18403059 18403500 -158570640 - L1MC4a LINE L1 -2441 3705 3247 1855 259 61 54 chrX 18403913 18404479 -158569661 + L1ME1 LINE L1 4106 4666 -1480 2560 34 0 0 chrX 18404479 18404776 -158569364 + AluYb8 SINE Alu 1 297 -21 1855 259 61 54 chrX 18404776 18405401 -158568739 + L1ME1 LINE L1 4666 5306 -840 2096 122 17 0 chrX 18405407 18405703 -158568437 + AluSx SINE Alu 1 301 -11 2198 241 98 4 chrX 18405817 18406121 -158568019 + L1ME1 LINE L1 5365 5639 -527 1461 229 5 111 chrX 18406121 18406698 -158567442 - MLT2B1 LTR ERVL 0 520 5 2198 241 98 4 chrX 18406698 18407118 -158567022 + L1ME1 LINE L1 5639 6157 -9 6524 83 10 0 chrX 18407390 18408417 -158565723 + L1PA10 LINE L1 5118 6158 -10 543 249 224 10 chrX 18409495 18409700 -158564440 - MIR SINE MIR -13 249 1 2233 44 91 0 chrX 18409765 18410040 -158564100 - AluY SINE Alu -11 300 1 30 0 0 0 chrX 18410225 18410255 -158563885 + AT_rich Low_complexity Low_complexity 1 30 0 480 350 42 21 chrX 18411049 18411289 -158562851 + L2 LINE L2 1376 1620 -1694 516 232 27 0 chrX 18411295 18411407 -158562733 + MER58A DNA MER1_type 1 115 0 318 190 0 0 chrX 18411426 18411484 -158562656 + MER58A DNA MER1_type 162 219 -5 1360 302 99 36 chrX 18411489 18412188 -158561952 + L2 LINE L2 1620 2362 -952 385 316 72 34 chrX 18412308 18412571 -158561569 + L1ME LINE L1 6 278 -5792 532 298 72 52 chrX 18412650 18412955 -158561185 + L1ME LINE L1 410 720 -5350 1523 261 45 4 chrX 18412993 18413499 -158560641 + L1M4 LINE L1 3187 3713 -2433 474 196 80 0 chrX 18413542 18413654 -158560486 - L1MA9 LINE L1 -38 6274 6154 381 43 0 0 chrX 18413725 18413772 -158560368 + (CA)n Simple_repeat Simple_repeat 2 48 0 689 183 15 0 chrX 18413782 18413913 -158560227 + L1MA9 LINE L1 5796 5928 -384 262 266 19 52 chrX 18413937 18414091 -158560049 + L1M4 LINE L1 3756 3904 -2242 261 0 0 0 chrX 18414110 18414145 -158559995 - L1MA3 LINE L1 0 6305 6271 1419 243 90 25 chrX 18414149 18415347 -158558793 + L1M4 LINE L1 3896 5213 -933 495 198 124 83 chrX 18415447 18415658 -158558482 + MLT1E2 LTR MaLR 64 272 -354 2224 80 13 13 chrX 18415930 18416232 -158557908 + AluSp SINE Alu 1 302 -11 446 163 116 12 chrX 18416661 18416747 -158557393 - 5S rRNA rRNA -25 96 2 2462 118 41 3 chrX 18416749 18417139 -158557001 + L1PA16 LINE L1 5752 6156 -10 5123 138 21 7 chrX 18417843 18418699 -158555441 - L1MB8 LINE L1 0 6178 5311 4059 172 45 9 chrX 18418710 18420335 -158553805 + L1PA13 LINE L1 4530 6158 -5 2005 214 44 8 chrX 18420365 18420846 -158553294 - L1MA9 LINE L1 -38 6274 5777 230 316 0 0 chrX 18420828 18420907 -158553233 - L1MC4 LINE L1 -1342 6700 6622 * 241 349 0 0 chrX 18420911 18420974 -158553166 + (TG)n Simple_repeat Simple_repeat 1 63 0 426 169 0 1 chrX 18420974 18421062 -158553078 + L1P5 LINE L1 5682 5768 -383 8501 219 40 39 chrX 18421100 18423839 -158550301 - L1M4 LINE L1 -841 5305 2563 180 0 0 0 chrX 18425101 18425121 -158549019 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 1428 179 7 29 chrX 18425129 18425402 -158548738 - AluJo SINE Alu -45 267 1 729 339 96 18 chrX 18425510 18426191 -158547949 + L2 LINE L2 2556 3308 -5 196 250 0 88 chrX 18426262 18426330 -158547810 + MIR SINE MIR 195 256 -6 25 31 0 0 chrX 18427120 18427152 -158546988 + AT_rich Low_complexity Low_complexity 1 32 0 192 145 32 32 chrX 18427260 18427322 -158546818 + CT-rich Low_complexity Low_complexity 2 63 0 972 77 26 7 chrX 18428795 18428950 -158545190 + (TTTC)n Simple_repeat Simple_repeat 3 160 0 1911 130 0 18 chrX 18428952 18429237 -158544903 - AluSx SINE Alu -32 280 1 433 310 32 7 chrX 18429552 18429707 -158544433 - MIR SINE MIR -97 165 7 228 234 86 132 chrX 18429909 18430106 -158544034 - MIR3 SINE MIR -5 203 16 22 0 0 0 chrX 18430761 18430783 -158543357 + AT_rich Low_complexity Low_complexity 1 22 0 5072 114 16 1 chrX 18430783 18431529 -158542611 - L1PA16 LINE L1 -9 6157 5401 21 36 0 0 chrX 18431574 18431602 -158542538 + AT_rich Low_complexity Low_complexity 1 28 0 955 225 14 14 chrX 18432207 18432425 -158541715 - MER20 DNA MER1_type 0 219 2 291 350 79 17 chrX 18433342 18433519 -158540621 + MIR SINE MIR 19 206 -56 197 346 75 23 chrX 18434376 18434509 -158539631 - L2 LINE L2 -410 2904 2765 21 0 0 0 chrX 18434929 18434950 -158539190 + AT_rich Low_complexity Low_complexity 1 21 0 489 228 98 62 chrX 18435247 18435440 -158538700 + L2 LINE L2 3114 3313 0 356 331 37 55 chrX 18435476 18435605 -158538535 - L1MC4a LINE L1 -1982 5826 5696 2147 87 3 7 chrX 18435605 18435892 -158538248 + AluSx SINE Alu 1 286 -26 267 31 0 0 chrX 18435892 18435924 -158538216 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 356 331 37 55 chrX 18435924 18436065 -158538075 - L1MC4a LINE L1 -2110 5698 5560 217 324 15 0 chrX 18436172 18436240 -158537900 + MIR SINE MIR 96 164 -98 252 340 65 20 chrX 18436755 18436908 -158537232 + MIR3 SINE MIR 38 197 -11 1369 179 107 0 chrX 18437315 18437578 -158536562 - AluJo SINE Alu -21 291 1 5666 151 16 15 chrX 18437930 18438051 -158536089 - L1MA4 LINE L1 -1 6299 6180 2171 148 15 0 chrX 18438051 18438383 -158535757 + MER1B DNA MER1_type 1 337 0 5666 151 16 15 chrX 18438383 18439732 -158534408 - L1MA4 LINE L1 -120 6180 4828 577 15 0 0 chrX 18440541 18440646 -158533494 + AluY SINE Alu 216 320 0 406 277 216 28 chrX 18440834 18441047 -158533093 - MIR SINE MIR 0 262 10 553 254 92 25 chrX 18441256 18441496 -158532644 - MLT1F LTR MaLR -4 538 283 283 198 73 31 chrX 18441694 18441790 -158532350 - HAL1 LINE L1 -467 2040 1941 732 263 93 48 chrX 18441818 18442335 -158531805 - HAL1 LINE L1 -1048 1459 920 378 331 12 45 chrX 18442411 18442653 -158531487 + L2 LINE L2 3080 3313 0 442 382 65 10 chrX 18443462 18443847 -158530293 + L3 LINE CR1 668 1073 -504 1734 127 0 0 chrX 18443871 18444108 -158530032 - AluSx SINE Alu -13 299 63 422 299 140 62 chrX 18444168 18444633 -158529507 + MLT1J LTR MaLR 11 511 0 212 350 81 19 chrX 18444637 18444797 -158529343 + L3 LINE CR1 1140 1309 -268 1724 143 51 0 chrX 18444897 18445212 -158528928 + L1M2 LINE L1 2559 2889 -3960 186 43 0 0 chrX 18445383 18445406 -158528734 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 361 242 144 92 chrX 18445548 18445854 -158528286 - LTR33A LTR ERVL -199 324 3 22 56 0 0 chrX 18445960 18445996 -158528144 + AT_rich Low_complexity Low_complexity 1 36 0 228 171 24 0 chrX 18446633 18446674 -158527466 + MER3 DNA MER1_type 1 42 -167 946 135 0 0 chrX 18446686 18446842 -158527298 - L1MA10 LINE L1 -1 6333 6178 468 51 0 0 chrX 18446884 18446943 -158527197 + (TG)n Simple_repeat Simple_repeat 2 60 0 2051 124 0 0 chrX 18446960 18447242 -158526898 + AluSc SINE Alu 1 282 -27 276 149 0 0 chrX 18447242 18447289 -158526851 + AluSc SINE Alu 249 295 -4 1149 129 43 17 chrX 18447290 18447522 -158526618 - L1MB1 LINE L1 -15 6153 5916 1694 57 0 3 chrX 18447648 18447928 -158526212 - MLT2A1 LTR ERVL -93 351 1 203 159 45 0 chrX 18450455 18450499 -158523641 + T-rich Low_complexity Low_complexity 2 47 0 694 286 58 46 chrX 18450500 18450829 -158523311 - MLT1I LTR MaLR -50 359 27 339 113 0 0 chrX 18451030 18451083 -158523057 + (TG)n Simple_repeat Simple_repeat 2 54 0 38 22 0 0 chrX 18452724 18452769 -158521371 + AT_rich Low_complexity Low_complexity 1 45 0 2414 76 0 3 chrX 18452984 18453287 -158520853 + AluY SINE Alu 2 303 -8 7162 176 15 44 chrX 18453466 18455858 -158518282 + L1PA16 LINE L1 3622 5929 -237 275 247 0 78 chrX 18455861 18455938 -158518202 + MER5B DNA MER1_type 102 172 -6 10950 127 18 8 chrX 18456379 18458410 -158515730 - L1P4 LINE L1 -502 5666 3609 2233 97 0 10 chrX 18458410 18458710 -158515430 + AluSc SINE Alu 4 300 -9 10950 127 18 8 chrX 18458710 18458782 -158515358 - L1P4 LINE L1 -2559 3609 3539 454 234 7 35 chrX 18458819 18458960 -158515180 - L1MEd LINE L1 -5944 175 39 398 274 56 138 chrX 18459064 18459491 -158514649 - L2 LINE L2 0 3313 2922 828 160 13 6 chrX 18460025 18460198 -158513942 + L1M2 LINE L1 5290 5467 -699 4509 148 12 12 chrX 18460298 18461691 -158512449 - L1PA15 LINE L1 -258 5907 4512 441 300 47 11 chrX 18461691 18461881 -158512259 + LTR33A LTR ERVL 325 521 -2 314 365 62 10 chrX 18461939 18462147 -158511993 + MIR SINE MIR 34 252 -10 21 0 0 0 chrX 18462598 18462619 -158511521 + AT_rich Low_complexity Low_complexity 1 21 0 327 344 47 42 chrX 18463113 18463305 -158510835 - L1ME3A LINE L1 -1 6169 5977 602 261 39 125 chrX 18463383 18463622 -158510518 - L1ME3A LINE L1 -226 5944 5686 2208 48 0 7 chrX 18463622 18463892 -158510248 - AluY SINE Alu -6 305 38 602 261 39 125 chrX 18463892 18464055 -158510085 - L1ME3A LINE L1 -484 5686 5511 1694 188 7 3 chrX 18464055 18464358 -158509782 - AluJb SINE Alu -5 307 4 602 261 39 125 chrX 18464358 18464627 -158509513 - L1ME3A LINE L1 -659 5511 5306 3918 201 50 22 chrX 18464747 18465746 -158508394 - L1MB3 LINE L1 -46 7097 6054 798 266 44 57 chrX 18465725 18466113 -158508027 - L1MC/D LINE L1 -2127 6641 6259 * 368 278 45 0 chrX 18466449 18466582 -158507558 - L1MB3 LINE L1 -1063 6043 5905 471 135 0 39 chrX 18466582 18466686 -158507454 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 3478 191 28 3 chrX 18466690 18467433 -158506707 - L1MB3 LINE L1 -1198 5908 5147 1929 205 12 2 chrX 18467446 18467860 -158506280 + L1 LINE L1 3394 3811 -2335 2042 172 0 22 chrX 18467861 18468221 -158505919 - MLT1A1 LTR MaLR -2 363 12 1881 200 0 5 chrX 18468231 18468606 -158505534 + L1 LINE L1 3806 4178 -1968 768 209 6 34 chrX 18468611 18468788 -158505352 + MER3 DNA MER1_type 38 209 0 397 207 0 0 chrX 18468976 18469063 -158505077 - L1MB3 LINE L1 -3106 4000 3914 * 1656 202 109 30 chrX 18469062 18469503 -158504637 - L1MB3 LINE L1 -6554 476 1 1133 229 58 99 chrX 18469508 18470165 -158503975 + L2 LINE L2 2686 3304 -9 241 192 0 19 chrX 18470195 18470247 -158503893 + (TATATG)n Simple_repeat Simple_repeat 5 55 0 194 380 89 21 chrX 18470692 18471221 -158502919 - L3 LINE CR1 -383 1194 630 259 329 0 0 chrX 18471295 18471374 -158502766 + L2 LINE L2 2569 2647 -667 360 328 17 0 chrX 18471460 18471579 -158502561 + L2 LINE L2 2941 3061 -211 733 261 71 0 chrX 18471584 18471768 -158502372 + MIR SINE MIR 2 198 -64 2289 122 26 3 chrX 18471773 18472117 -158502023 + MER46B DNA MER2_type 6 232 -4 243 0 0 0 chrX 18472128 18472155 -158501985 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 36 0 0 chrX 18472160 18472188 -158501952 + (GA)n Simple_repeat Simple_repeat 2 29 0 252 250 0 0 chrX 18472190 18472242 -158501898 + MIR SINE MIR 210 261 -1 405 0 0 0 chrX 18472957 18473002 -158501138 + (TG)n Simple_repeat Simple_repeat 1 45 0 2190 74 0 18 chrX 18473002 18473287 -158500853 - AluSq SINE Alu -33 280 1 24 32 0 0 chrX 18473473 18473504 -158500636 + AT_rich Low_complexity Low_complexity 1 31 0 279 313 15 30 chrX 18474279 18474413 -158499727 + MLT1K LTR MaLR 427 558 -30 22 70 0 0 chrX 18474848 18474891 -158499249 + AT_rich Low_complexity Low_complexity 1 43 0 1466 268 102 7 chrX 18475090 18475511 -158498629 - LTR16B LTR ERVL -3 461 1 880 198 16 32 chrX 18475948 18476135 -158498005 - MER5A DNA MER1_type -2 187 4 3489 77 24 16 chrX 18476249 18476757 -158497383 + L1MA1 LINE L1 5782 6293 -9 27 62 0 0 chrX 18476843 18476891 -158497249 + AT_rich Low_complexity Low_complexity 1 48 0 23 0 0 0 chrX 18477088 18477111 -158497029 + AT_rich Low_complexity Low_complexity 1 23 0 1198 58 13 0 chrX 18477111 18477267 -158496873 - L1PA5 LINE L1 -2 6152 5995 1149 23 0 0 chrX 18477268 18477400 -158496740 + L1PA5 LINE L1 5822 5953 -201 2208 208 66 55 chrX 18477428 18478077 -158496063 - L1ME1 LINE L1 -169 6066 5411 1373 258 71 9 chrX 18478078 18478602 -158495538 - L1ME1 LINE L1 -4329 2067 1512 2331 106 3 0 chrX 18478605 18478942 -158495198 - AluSq SINE Alu 0 338 1 2297 78 0 26 chrX 18479057 18479363 -158494777 - AluY SINE Alu -13 298 1 1195 296 18 24 chrX 18479410 18479863 -158494277 - L1ME1 LINE L1 -5698 698 249 313 263 52 113 chrX 18480526 18480739 -158493401 - LTR16A1 LTR ERVL -113 344 145 1756 194 0 3 chrX 18482157 18482467 -158491673 + AluJo SINE Alu 1 309 -3 22 0 0 0 chrX 18482542 18482564 -158491576 + AT_rich Low_complexity Low_complexity 1 22 0 182 322 102 0 chrX 18482612 18482671 -158491469 - MIR3 SINE MIR -36 172 108 237 33 0 0 chrX 18483187 18483217 -158490923 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chrX 18483917 18483938 -158490202 + AT_rich Low_complexity Low_complexity 1 21 0 1088 366 57 17 chrX 18484459 18485167 -158488973 + ERVL LTR ERVL 3002 3706 -1779 497 380 68 47 chrX 18485240 18485555 -158488585 + L2 LINE L2 1972 2279 -1035 3103 152 30 23 chrX 18485555 18486154 -158487986 - L1MB3 LINE L1 -2 6181 5579 497 380 68 47 chrX 18486154 18486515 -158487625 + L2 LINE L2 2279 2662 -652 335 209 48 29 chrX 18486551 18486656 -158487484 - HERV16 LTR ERVL -3223 2541 2435 266 356 139 9 chrX 18486656 18486886 -158487254 + L2 LINE L2 2707 2966 -348 300 292 62 56 chrX 18487011 18487206 -158486934 + L2 LINE L2 3118 3313 0 299 353 25 14 chrX 18487572 18487883 -158486257 - HERV16 LTR ERVL -2389 2607 2311 183 204 0 0 chrX 18487978 18488027 -158486113 + (CATA)n Simple_repeat Simple_repeat 4 52 0 251 318 0 71 chrX 18488440 18488566 -158485574 - HERV16 LTR ERVL -4035 1619 1503 330 218 165 68 chrX 18490204 18490337 -158483803 - MIR SINE MIR -114 148 3 741 265 10 25 chrX 18490489 18490685 -158483455 + MIR SINE MIR 40 232 -30 238 259 111 0 chrX 18490693 18490774 -158483366 - L1MC4 LINE L1 -1339 6703 6614 2265 111 0 0 chrX 18490896 18491194 -158482946 - AluSx SINE Alu -12 300 3 25 65 0 0 chrX 18491250 18491296 -158482844 + AT_rich Low_complexity Low_complexity 1 46 0 237 83 0 0 chrX 18491338 18491374 -158482766 + (TG)n Simple_repeat Simple_repeat 1 36 0 291 266 133 27 chrX 18492600 18492788 -158481352 - MLT1K LTR MaLR 0 588 381 2070 174 60 19 chrX 18493402 18493817 -158480323 - MSTB1 LTR MaLR 0 432 1 219 103 0 0 chrX 18494224 18494263 -158479877 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 4551 39 4 0 chrX 18494393 18494976 -158479164 + L1PA5 LINE L1 5600 6184 0 398 280 70 91 chrX 18495424 18495468 -158478672 + LTR16C LTR ERVL 82 125 -366 2148 71 64 7 chrX 18495468 18495751 -158478389 - AluSx SINE Alu -13 299 1 398 280 70 91 chrX 18495751 18496035 -158478105 + LTR16C LTR ERVL 125 403 -88 500 261 149 37 chrX 18497350 18497511 -158476629 + MER5A DNA MER1_type 10 188 -1 14784 130 11 25 chrX 18498408 18500414 -158473726 - Tigger1 DNA MER2_type 0 2418 452 2027 131 0 39 chrX 18500414 18500726 -158473414 + AluSx SINE Alu 3 302 -10 14784 130 11 25 chrX 18500726 18501171 -158472969 - Tigger1 DNA MER2_type -1966 452 2 31 0 0 0 chrX 18501479 18501510 -158472630 + AT_rich Low_complexity Low_complexity 1 31 0 362 252 29 10 chrX 18501718 18501821 -158472319 + L1ME LINE L1 5617 5721 -400 22 35 0 0 chrX 18501900 18501929 -158472211 + AT_rich Low_complexity Low_complexity 1 29 0 3053 210 44 49 chrX 18502957 18504098 -158470042 + L1M2b LINE L1 1 1146 -6063 2287 103 0 3 chrX 18504098 18504398 -158469742 + AluSq SINE Alu 1 299 -14 3053 210 44 49 chrX 18504398 18504837 -158469303 + L1M2b LINE L1 1146 2471 -4738 198 277 27 80 chrX 18505537 18505649 -158468491 - MIR SINE MIR -71 191 86 21 71 0 0 chrX 18506550 18506592 -158467548 + AT_rich Low_complexity Low_complexity 1 42 0 272 358 21 0 chrX 18507003 18507098 -158467042 + MLT2F LTR ERVL 214 310 -353 417 220 22 0 chrX 18507127 18507218 -158466922 + MLT2F LTR ERVL 516 608 -55 258 95 0 0 chrX 18507221 18507263 -158466877 + (TC)n Simple_repeat Simple_repeat 1 42 0 595 103 9 9 chrX 18507560 18507667 -158466473 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 482 374 6 0 chrX 18507904 18508075 -158466065 + MER91A DNA MER1_type 12 183 -13 198 380 13 0 chrX 18508187 18508266 -158465874 - MIR SINE MIR -110 152 73 280 335 66 6 chrX 18509982 18510149 -158463991 + MLT1K LTR MaLR 378 554 -34 27 0 0 0 chrX 18510710 18510737 -158463403 + AT_rich Low_complexity Low_complexity 1 27 0 368 20 0 20 chrX 18511086 18511136 -158463004 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 29 47 0 0 chrX 18511261 18511304 -158462836 + AT_rich Low_complexity Low_complexity 1 43 0 568 315 5 12 chrX 18511547 18511737 -158462403 - HERVL LTR ERVL -1900 3096 3002 20759 53 1 2 chrX 18511756 18515193 -158458947 + L1PA6 LINE L1 2707 6137 -17 430 113 0 0 chrX 18515208 18515270 -158458870 - L1P LINE L1 -899 5247 5186 1430 314 36 6 chrX 18515556 18516060 -158458080 - HERVL LTR ERVL -2297 2699 2181 24 32 0 0 chrX 18516196 18516227 -158457913 + AT_rich Low_complexity Low_complexity 1 31 0 273 146 0 0 chrX 18516236 18516284 -158457856 + (CA)n Simple_repeat Simple_repeat 1 48 0 247 336 161 7 chrX 18517452 18517589 -158456551 + MIR SINE MIR 95 252 -10 26 50 0 0 chrX 18518230 18518270 -158455870 + AT_rich Low_complexity Low_complexity 1 40 0 2321 87 0 0 chrX 18519983 18520272 -158453868 + AluSx SINE Alu 1 289 -23 510 139 40 0 chrX 18520272 18520423 -158453717 + (TA)n Simple_repeat Simple_repeat 2 158 0 23 54 0 0 chrX 18521197 18521234 -158452906 + AT_rich Low_complexity Low_complexity 1 37 0 209 294 15 15 chrX 18522070 18522138 -158452002 - L2 LINE L2 0 3272 3205 290 266 101 18 chrX 18523502 18523611 -158450529 + Zaphod DNA AcHobo 9 126 -3905 290 182 141 79 chrX 18523611 18523902 -158450238 + Zaphod DNA AcHobo 700 1008 -3023 262 200 109 18 chrX 18523893 18524003 -158450137 + Zaphod DNA AcHobo 3610 3729 -302 * 2055 92 78 0 chrX 18524319 18524600 -158449540 + AluSp SINE Alu 1 303 -10 2203 121 0 0 chrX 18524939 18525236 -158448904 - AluSx SINE Alu -15 297 1 1524 142 0 0 chrX 18525496 18525715 -158448425 + AluJb SINE Alu 81 299 -13 355 275 41 102 chrX 18526467 18526929 -158447211 - L1ME3A LINE L1 -56 6114 5681 3887 170 10 44 chrX 18526980 18527812 -158446328 - L1ME1 LINE L1 -50 6236 5470 622 249 42 82 chrX 18527857 18528262 -158445878 - LTR15 LTR ERV1 0 493 105 26 64 0 0 chrX 18528598 18528645 -158445495 + AT_rich Low_complexity Low_complexity 1 47 0 1828 129 25 0 chrX 18530594 18530780 -158443360 - AluSx SINE Alu 0 315 117 243 0 0 0 chrX 18530780 18530807 -158443333 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1828 129 25 0 chrX 18530807 18530928 -158443212 - AluSx SINE Alu -198 117 1 310 303 166 42 chrX 18530944 18531228 -158442912 - L2 LINE L2 -44 3269 2951 * 1492 290 58 8 chrX 18531215 18531719 -158442421 - L2 LINE L2 -839 2475 1947 21 36 0 0 chrX 18531750 18531778 -158442362 + AT_rich Low_complexity Low_complexity 1 28 0 2379 126 55 36 chrX 18533139 18533555 -158440585 + L1MB3 LINE L1 5705 6132 -51 2354 91 3 0 chrX 18533555 18533851 -158440289 + AluSq SINE Alu 1 297 -16 2379 126 55 36 chrX 18533851 18533903 -158440237 + L1MB3 LINE L1 6132 6182 -1 2027 109 6 34 chrX 18533914 18534236 -158439904 + AluSq SINE Alu 1 313 0 187 281 8 107 chrX 18534916 18535037 -158439103 + MIR SINE MIR 98 206 -56 181 130 65 0 chrX 18535131 18535177 -158438963 + GA-rich Low_complexity Low_complexity 1 49 0 222 62 0 0 chrX 18535630 18535662 -158438478 + (TA)n Simple_repeat Simple_repeat 1 32 0 760 155 0 0 chrX 18535710 18535826 -158438314 + FLAM_C SINE Alu 1 116 -17 23 33 0 0 chrX 18537175 18537205 -158436935 + AT_rich Low_complexity Low_complexity 1 30 0 4243 127 57 0 chrX 18537964 18538636 -158435504 + L1PA16 LINE L1 5448 6157 -9 279 0 0 0 chrX 18538637 18538668 -158435472 + (TA)n Simple_repeat Simple_repeat 2 32 0 482 127 13 0 chrX 18540175 18540254 -158433886 - MADE1 DNA Mariner 0 80 1 500 240 16 8 chrX 18540358 18540479 -158433661 - L1ME LINE L1 -556 5614 5493 325 288 92 50 chrX 18540525 18540716 -158433424 - L2 LINE L2 -327 2986 2790 534 337 76 37 chrX 18540969 18541538 -158432602 - L2 LINE L2 -933 2381 1791 1026 238 19 0 chrX 18541626 18541840 -158432300 - MER20 DNA MER1_type 0 219 2 210 71 0 0 chrX 18542330 18542358 -158431782 + (TG)n Simple_repeat Simple_repeat 2 29 0 315 372 148 22 chrX 18542417 18542694 -158431446 - L2 LINE L2 -1899 1415 1104 1669 157 89 19 chrX 18542797 18543110 -158431030 - MER1B DNA MER1_type 0 337 3 2748 244 60 81 chrX 18543151 18544480 -158429660 + L1MD3 LINE L1 6667 7968 -27 230 160 40 0 chrX 18544544 18544594 -158429546 + L2 LINE L2 3262 3313 0 2025 116 17 3 chrX 18544770 18545064 -158429076 + AluSx SINE Alu 1 298 -14 1168 194 76 7 chrX 18545487 18545775 -158428365 + MER33 DNA MER1_type 1 308 -16 1411 193 33 95 chrX 18546515 18546991 -158427149 - Charlie1 DNA MER1_type -10 2751 2308 423 0 0 0 chrX 18546991 18547038 -158427102 + (TG)n Simple_repeat Simple_repeat 2 48 0 1411 193 33 95 chrX 18547038 18547079 -158427061 - Charlie1 DNA MER1_type -453 2308 2266 7259 142 9 9 chrX 18547079 18549079 -158425061 - L1PA10 LINE L1 -2 6166 4164 255 277 48 26 chrX 18550259 18550391 -158423749 - MIR SINE MIR -73 135 21 1856 250 46 49 chrX 18550451 18551104 -158423036 - MER69 DNA AcHobo -1423 1103 453 3741 138 63 78 chrX 18551148 18551945 -158422195 + LTR1 LTR ERV1 1 785 0 1458 265 58 14 chrX 18551945 18552380 -158421760 - MER69 DNA AcHobo -2071 455 1 1046 250 0 18 chrX 18552520 18552744 -158421396 + AluJo SINE Alu 1 220 -92 186 43 0 0 chrX 18552787 18552810 -158421330 + (GA)n Simple_repeat Simple_repeat 2 24 0 261 0 0 0 chrX 18553370 18553399 -158420741 + (TG)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 18553398 18553420 -158420720 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 232 233 150 0 chrX 18554185 18554245 -158419895 - MLT1H1 LTR MaLR -281 274 206 1052 274 97 65 chrX 18554560 18555096 -158419044 - MLT1H1 LTR MaLR -2 553 1 310 298 73 48 chrX 18555387 18555635 -158418505 + L3b LINE CR1 1102 1355 -228 301 136 37 49 chrX 18556626 18556707 -158417433 - MER116 DNA Mariner 0 80 1 330 282 26 34 chrX 18556723 18556840 -158417300 - MIR SINE MIR -74 188 73 192 330 130 0 chrX 18557506 18557606 -158416534 + L2 LINE L2 3156 3268 -4 459 0 0 0 chrX 18557656 18557707 -158416433 + (TG)n Simple_repeat Simple_repeat 2 52 0 1876 26 18 0 chrX 18557751 18557977 -158416163 + L1PA4 LINE L1 5924 6153 -2 22 0 0 0 chrX 18558207 18558229 -158415911 + AT_rich Low_complexity Low_complexity 1 22 0 2474 185 42 18 chrX 18558466 18558658 -158415482 + LTR54 LTR ERV1 1 187 -323 377 135 52 31 chrX 18558658 18558754 -158415386 - L1MA4A LINE L1 -2 6301 6204 2474 185 42 18 chrX 18558754 18559059 -158415081 + LTR54 LTR ERV1 187 510 0 360 0 0 0 chrX 18559067 18559107 -158415033 + (TA)n Simple_repeat Simple_repeat 2 41 0 4118 230 29 16 chrX 18559123 18560285 -158413855 + L1 LINE L1 2344 3521 -2625 1894 189 57 115 chrX 18560287 18560984 -158413156 + MER61E LTR ERV1 1 779 0 2514 188 38 11 chrX 18560984 18561537 -158412603 + L1 LINE L1 3520 4087 -2059 420 66 0 6 chrX 18561537 18561597 -158412543 - MLT2A1 LTR ERVL 0 444 392 597 172 60 9 chrX 18561679 18561795 -158412345 + FLAM_C SINE Alu 5 126 -17 279 133 0 0 chrX 18562095 18562140 -158412000 + (TG)n Simple_repeat Simple_repeat 2 46 0 2651 97 13 8 chrX 18562261 18562634 -158411506 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 18563414 18563442 -158410698 + AT_rich Low_complexity Low_complexity 1 28 0 845 314 76 7 chrX 18563733 18564153 -158409987 + LTR16A LTR ERVL 1 449 -1 709 231 17 97 chrX 18564154 18564392 -158409748 + HERV16 LTR ERVL 1 219 -4777 3619 182 53 14 chrX 18564443 18565234 -158408906 + L1MB8 LINE L1 5355 6176 -2 367 296 53 0 chrX 18565286 18565418 -158408722 + HERV16 LTR ERVL 262 400 -4596 * 2641 314 47 46 chrX 18565409 18566369 -158407771 + HERV16 LTR ERVL 2754 3805 -1959 2481 67 0 3 chrX 18566369 18566668 -158407472 - AluY SINE Alu -13 298 1 2641 314 47 46 chrX 18566668 18567430 -158406710 + HERV16 LTR ERVL 3805 4565 -1199 1017 138 117 11 chrX 18567430 18567618 -158406522 - MSTA LTR MaLR 0 428 221 628 143 0 10 chrX 18567622 18567720 -158406420 - MSTA LTR MaLR -331 97 1 1778 29 0 0 chrX 18567836 18568045 -158406095 + L1PA3 LINE L1 5947 6155 0 267 341 61 23 chrX 18568087 18568301 -158405839 + HERV16 LTR ERVL 4681 4902 -752 356 308 69 6 chrX 18568897 18569056 -158405084 + LTR16A LTR ERVL 103 271 -179 617 299 119 42 chrX 18570391 18571073 -158403067 - LTR41 LTR ERVL -25 748 15 465 257 121 14 chrX 18571089 18571229 -158402911 - HERV16 LTR ERVL -1467 4297 4143 709 351 78 33 chrX 18571304 18572248 -158401892 - HERV16 LTR ERVL -1494 3991 3005 588 312 9 23 chrX 18572245 18572460 -158401680 - HERV16 LTR ERVL -4474 522 311 * 574 193 143 0 chrX 18572464 18572604 -158401536 - MER58C DNA MER1_type 0 215 56 452 303 21 0 chrX 18572628 18572773 -158401367 - HERV16 LTR ERVL -4704 292 145 2132 216 54 13 chrX 18572773 18573459 -158400681 + L1MA6 LINE L1 3356 4124 -3441 * 3345 154 27 9 chrX 18573453 18575072 -158399068 + L1MA6 LINE L1 5636 7325 -394 2140 148 46 0 chrX 18575073 18575446 -158398694 - Tigger1 DNA MER2_type -1 2417 2028 * 2586 134 26 16 chrX 18575430 18575856 -158398284 - Tigger1 DNA MER2_type -1959 459 30 1703 161 0 0 chrX 18575871 18576157 -158397983 + L1MA6 LINE L1 7324 7609 -110 525 187 11 0 chrX 18576158 18576249 -158397891 + AluJ/FLAM SINE Alu 1 92 -220 642 120 46 0 chrX 18576277 18576385 -158397755 + L1MA6 LINE L1 7598 7710 -9 363 297 95 27 chrX 18576408 18576556 -158397584 - HERV16 LTR ERVL -4837 159 2 777 254 124 9 chrX 18576611 18576828 -158397312 - LTR16A LTR ERVL -105 345 104 366 197 18 26 chrX 18577686 18577786 -158396354 + LTR24B LTR ERV1 1 97 -368 716 277 44 44 chrX 18577825 18578190 -158395950 + LTR24B LTR ERV1 207 571 -5 1100 156 156 13 chrX 18578559 18578742 -158395398 - MSTA LTR MaLR -2 426 204 756 33 0 0 chrX 18578742 18578833 -158395307 + (GA)n Simple_repeat Simple_repeat 1 91 0 1100 156 156 13 chrX 18578833 18578873 -158395267 - MSTA LTR MaLR -224 204 171 1739 140 75 28 chrX 18578873 18579231 -158394909 + THE1C LTR MaLR 1 375 0 10085 122 47 6 chrX 18579231 18580749 -158393391 + THE1C-int LTR MaLR 1 1580 0 287 77 0 0 chrX 18580749 18580788 -158393352 + THE1C LTR MaLR 1 39 -389 * 1161 162 25 30 chrX 18580765 18581000 -158393140 + THE1C LTR MaLR 142 375 0 765 202 40 17 chrX 18581000 18581171 -158392969 - MSTA LTR MaLR -253 175 1 473 284 33 76 chrX 18581335 18581610 -158392530 + LTR16A1 LTR ERVL 107 369 -88 272 239 28 14 chrX 18582098 18582169 -158391971 + Charlie8 DNA MER1_type 29 100 -2317 2858 157 59 9 chrX 18582230 18582762 -158391378 - LTR49 LTR ERV1 -6 589 31 4010 107 14 87 chrX 18582762 18583138 -158391002 + MER39B LTR ERV1 1 403 -250 5935 114 1 22 chrX 18583138 18583847 -158390293 + L1PA16 LINE L1 4614 5336 -830 2515 7 0 0 chrX 18583847 18584120 -158390020 + AluYa5 SINE Alu 36 308 -3 5935 114 1 22 chrX 18584120 18584963 -158389177 + L1PA16 LINE L1 5336 6157 -9 4010 107 14 87 chrX 18584963 18584986 -158389154 + MER39B LTR ERV1 403 426 -227 2138 100 7 0 chrX 18584986 18585327 -158388813 + AluSp SINE Alu 1 343 0 4010 107 14 87 chrX 18585327 18585629 -158388511 + MER39B LTR ERV1 426 653 0 231 61 0 0 chrX 18585629 18585662 -158388478 - LTR49 LTR ERV1 -562 33 1 2726 106 22 26 chrX 18585779 18586233 -158387907 - L1MA5 LINE L1 -5 6295 5844 219 327 109 10 chrX 18586285 18586386 -158387754 + L2 LINE L2 3154 3264 -8 775 157 0 0 chrX 18587505 18587620 -158386520 + FLAM_C SINE Alu 1 115 -18 195 42 0 0 chrX 18587623 18587647 -158386493 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 828 275 35 72 chrX 18587676 18587963 -158386177 + MLT1I LTR MaLR 47 319 -90 2405 61 0 0 chrX 18587963 18588269 -158385871 + AluSg SINE Alu 1 306 0 828 275 35 72 chrX 18588269 18588355 -158385785 + MLT1I LTR MaLR 319 407 -2 1752 129 17 28 chrX 18589790 18590135 -158384005 + MER61B LTR ERV1 1 425 0 182 298 40 111 chrX 18591009 18591234 -158382906 - L2 LINE L2 -428 2886 2678 268 152 288 0 chrX 18591510 18591576 -158382564 + L2 LINE L2 3229 3313 0 518 348 147 12 chrX 18591698 18592120 -158382020 - L2 LINE L2 -927 2387 1909 3396 228 88 72 chrX 18592265 18592430 -158381710 - L1MC4 LINE L1 -124 7918 7757 1963 122 7 7 chrX 18592430 18592718 -158381422 - AluJb SINE Alu -14 298 11 3396 228 88 72 chrX 18592718 18593246 -158380894 - L1MC4 LINE L1 -285 7757 7239 1218 189 49 35 chrX 18593246 18593394 -158380746 - AluJo SINE Alu -11 291 147 1147 76 12 12 chrX 18593394 18593566 -158380574 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1894 153 0 3 chrX 18593571 18593859 -158380281 - AluSx SINE Alu -23 289 3 1218 189 49 35 chrX 18593859 18593879 -158380261 - AluJo SINE Alu -158 144 126 441 0 0 0 chrX 18593879 18593928 -158380212 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1218 189 49 35 chrX 18593928 18594038 -158380102 - AluJo SINE Alu -176 126 2 3396 228 88 72 chrX 18594038 18594662 -158379478 - L1MC4 LINE L1 -803 7239 6579 2400 114 22 6 chrX 18595199 18595557 -158378583 + THE1B LTR MaLR 1 364 0 702 293 68 43 chrX 18595581 18595977 -158378163 - MLT1I LTR MaLR -3 406 1 642 308 79 7 chrX 18597408 18597700 -158376440 - MLT1I LTR MaLR -1 408 96 248 111 0 0 chrX 18598145 18598190 -158375950 + LTR66 LTR ERVL 394 438 -172 192 152 0 0 chrX 18598199 18598232 -158375908 + (TA)n Simple_repeat Simple_repeat 2 34 0 369 83 44 83 chrX 18598509 18598689 -158375451 + (TTTAA)n Simple_repeat Simple_repeat 5 177 0 2046 120 32 0 chrX 18598705 18598988 -158375152 + AluSq SINE Alu 3 294 -19 28926 70 4 0 chrX 18598991 18602740 -158371400 + L1P LINE L1 4 3766 -2380 2316 67 0 0 chrX 18602740 18603031 -158371109 + L1PA5 LINE L1 5849 6148 -6 342 0 0 0 chrX 18603207 18603245 -158370895 + (CA)n Simple_repeat Simple_repeat 2 39 0 293 293 143 23 chrX 18603380 18603513 -158370627 + MIR SINE MIR 18 166 -96 1517 173 100 23 chrX 18603858 18604214 -158369926 + L1MB1 LINE L1 5786 6168 0 238 250 0 0 chrX 18604276 18604324 -158369816 + (CA)n Simple_repeat Simple_repeat 2 49 0 2275 83 3 0 chrX 18604328 18604616 -158369524 + AluSp SINE Alu 1 289 -24 21 36 0 0 chrX 18604993 18605021 -158369119 + AT_rich Low_complexity Low_complexity 1 28 0 289 203 0 16 chrX 18605408 18605472 -158368668 + LTR37B LTR ERV1 8 70 -398 27 73 0 0 chrX 18606739 18606794 -158367346 + AT_rich Low_complexity Low_complexity 1 55 0 228 254 0 16 chrX 18607465 18607528 -158366612 + T-rich Low_complexity Low_complexity 3 64 0 198 71 0 0 chrX 18607865 18607893 -158366247 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 2346 62 3 7 chrX 18607907 18608196 -158365944 - AluSg SINE Alu -22 288 1 369 43 0 0 chrX 18610117 18610153 -158363987 + (TG)n Simple_repeat Simple_repeat 1 83 0 369 43 0 0 chrX 18610153 18610200 -158363940 + (TG)n Simple_repeat Simple_repeat 1 47 0 22 56 0 0 chrX 18610351 18610387 -158363753 + AT_rich Low_complexity Low_complexity 1 36 0 1144 113 0 0 chrX 18611086 18611261 -158362879 - AluSp SINE Alu 0 306 132 2605 144 30 55 chrX 18611499 18611959 -158362181 - L1MA6 LINE L1 -23 6277 5830 2786 10 0 0 chrX 18611959 18612267 -158361873 - AluYa5 SINE Alu -3 308 1 2605 144 30 55 chrX 18612267 18612314 -158361826 - L1MA6 LINE L1 -470 5830 5783 351 285 11 17 chrX 18612337 18612516 -158361624 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 4638 165 37 38 chrX 18612516 18612935 -158361205 - L1MA6 LINE L1 -507 5793 5375 2264 100 0 0 chrX 18612935 18613226 -158360914 - AluSc SINE Alu -14 295 5 4638 165 37 38 chrX 18613226 18613960 -158360180 - L1MA6 LINE L1 -925 5375 4614 2032 115 7 0 chrX 18613960 18614239 -158359901 - AluSx SINE Alu -17 295 15 4638 165 37 38 chrX 18614239 18614369 -158359771 - L1MA6 LINE L1 -1686 4614 4485 1305 199 14 36 chrX 18614369 18614646 -158359494 - AluJo SINE Alu -15 297 27 813 196 0 12 chrX 18614646 18614819 -158359321 - L1MA6 LINE L1 -1660 4486 4316 319 254 0 91 chrX 18614857 18615022 -158359118 - MIR SINE MIR -56 206 57 188 86 29 0 chrX 18616131 18616166 -158357974 + (TA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chrX 18616642 18616668 -158357472 + AT_rich Low_complexity Low_complexity 1 26 0 222 345 127 0 chrX 18618463 18618605 -158355535 + MIR SINE MIR 48 207 -55 277 304 180 37 chrX 18618938 18619099 -158355041 - MIR SINE MIR -71 191 8 858 196 18 0 chrX 18619687 18619855 -158354285 + MLT1B LTR MaLR 1 171 -219 767 122 0 0 chrX 18619855 18619970 -158354170 + AluSc SINE Alu 188 302 -7 820 250 77 15 chrX 18620012 18620272 -158353868 + MLT1B LTR MaLR 192 467 0 444 186 12 0 chrX 18620722 18620808 -158353332 - MLT1F1 LTR MaLR 0 567 481 850 258 15 49 chrX 18620810 18621074 -158353066 - MLT1E LTR MaLR -317 276 22 188 312 0 52 chrX 18621359 18621436 -158352704 + MIR SINE MIR 12 84 -178 206 321 125 24 chrX 18622207 18622375 -158351765 - MIR SINE MIR -25 237 53 2272 228 51 14 chrX 18622876 18623588 -158350552 + L1MB7 LINE L1 4653 5388 -783 227 338 176 14 chrX 18623650 18623792 -158350348 + MLT1L LTR MaLR 308 472 -143 2479 212 51 47 chrX 18624139 18624277 -158349863 + MER76 LTR ERV 1 137 -551 378 0 0 0 chrX 18624277 18624319 -158349821 + (TA)n Simple_repeat Simple_repeat 2 43 0 2306 91 10 0 chrX 18624319 18624616 -158349524 - AluSx SINE Alu -12 300 1 2479 212 51 47 chrX 18624616 18625161 -158348979 + MER76 LTR ERV 136 688 0 276 30 0 0 chrX 18625348 18625381 -158348759 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 80 40 20 chrX 18625384 18625434 -158348706 + GA-rich Low_complexity Low_complexity 2 52 0 676 161 0 0 chrX 18626447 18626571 -158347569 - L1MD1 LINE L1 -2 6240 6117 6003 145 18 26 chrX 18626573 18626789 -158347351 + L1MA9 LINE L1 5038 5254 -1058 1891 131 134 33 chrX 18626789 18627178 -158346962 + MSTA LTR MaLR 1 428 0 6003 145 18 26 chrX 18627178 18628249 -158345891 + L1MA9 LINE L1 5254 6312 0 2901 147 35 39 chrX 18628245 18628788 -158345352 + L1MB2 LINE L1 5428 5968 -215 * 2321 90 0 0 chrX 18628788 18629098 -158345042 + AluSg SINE Alu 1 310 0 384 22 0 0 chrX 18629098 18629143 -158344997 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 927 161 32 37 chrX 18629143 18629361 -158344779 + L1MB2 LINE L1 5953 6169 -2 1157 242 74 55 chrX 18629364 18629781 -158344359 - L1MD2 LINE L1 -123 6236 5812 1203 296 48 12 chrX 18629781 18630369 -158343771 + L1MB7 LINE L1 5516 6124 -60 690 253 55 0 chrX 18630414 18630671 -158343469 + L1M4 LINE L1 4316 4586 -1560 407 278 87 23 chrX 18630695 18631111 -158343029 + L1M4 LINE L1 5358 5815 -351 1667 256 71 56 chrX 18631113 18632217 -158341923 + L1MB7 LINE L1 4517 5603 -581 2241 109 0 6 chrX 18632217 18632529 -158341611 - AluSg SINE Alu 0 310 1 1667 256 71 56 chrX 18632529 18632919 -158341221 + L1MB7 LINE L1 5603 6033 -151 2170 121 13 0 chrX 18632919 18633226 -158340914 - AluSx SINE Alu -1 311 1 1667 256 71 56 chrX 18633226 18633380 -158340760 + L1MB7 LINE L1 6033 6183 -1 183 42 0 0 chrX 18633392 18633416 -158340724 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1750 152 0 31 chrX 18633416 18633705 -158340435 - AluJb SINE Alu -32 280 1 1775 263 31 29 chrX 18633706 18633876 -158340264 + L1MB7 LINE L1 5440 5608 -576 2408 90 0 3 chrX 18633876 18634188 -158339952 + AluSp SINE Alu 3 313 0 1775 263 31 29 chrX 18634188 18634758 -158339382 + L1MB7 LINE L1 5608 6181 -3 1075 269 95 51 chrX 18634754 18635682 -158338458 + L1M4 LINE L1 4321 5289 -857 * 1018 190 20 75 chrX 18635715 18635895 -158338245 + L1PB4 LINE L1 5905 6070 -86 2244 103 0 0 chrX 18635895 18636231 -158337909 + AluSg SINE Alu 1 336 0 1018 190 20 75 chrX 18636231 18636302 -158337838 + L1PB4 LINE L1 6070 6143 -13 545 268 60 89 chrX 18636357 18636524 -158337616 + L1M4 LINE L1 5272 5442 -727 1524 153 4 0 chrX 18636524 18636766 -158337374 + AluJo SINE Alu 47 289 -23 545 268 60 89 chrX 18636766 18637147 -158336993 + L1M4 LINE L1 5442 5807 -362 514 220 31 78 chrX 18637162 18637258 -158336882 + L1MB7 LINE L1 4517 4601 -1545 2360 76 0 0 chrX 18637258 18637561 -158336579 + AluY SINE Alu 1 303 -8 514 220 31 78 chrX 18637561 18637655 -158336485 + L1MB7 LINE L1 4601 4698 -1448 1359 143 55 48 chrX 18637727 18638000 -158336140 + AluJo SINE Alu 27 301 -11 414 0 0 0 chrX 18638091 18638137 -158336003 + (CA)n Simple_repeat Simple_repeat 1 46 0 1164 283 49 21 chrX 18638139 18638709 -158335431 + L1MB7 LINE L1 5134 5723 -443 477 269 162 0 chrX 18638760 18639031 -158335109 + L1MB7 LINE L1 5861 6175 -9 * 1214 271 20 30 chrX 18639030 18639072 -158335068 + L1M4 LINE L1 4316 4357 -1789 2025 116 0 3 chrX 18639072 18639390 -158334750 + AluSx SINE Alu 1 317 0 1214 271 20 30 chrX 18639390 18639855 -158334285 + L1M4 LINE L1 4357 4819 -1327 588 165 68 11 chrX 18639854 18640030 -158334110 + L1M4 LINE L1 5205 5390 -756 * 401 233 16 23 chrX 18640029 18640158 -158333982 + L1MB8 LINE L1 6039 6166 -12 * 287 167 0 0 chrX 18640169 18640223 -158333917 + L1M4 LINE L1 4324 4377 -1769 2301 92 0 0 chrX 18640349 18640643 -158333497 + AluSx SINE Alu 1 294 -18 225 94 0 0 chrX 18640709 18640741 -158333399 + (A)n Simple_repeat Simple_repeat 1 32 0 21 57 0 0 chrX 18642228 18642263 -158331877 + AT_rich Low_complexity Low_complexity 1 35 0 418 338 162 51 chrX 18644842 18645245 -158328895 + L2 LINE L2 2319 2676 -638 194 0 0 37 chrX 18645245 18645272 -158328868 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2244 101 0 0 chrX 18645272 18645559 -158328581 - AluSx SINE Alu -25 287 1 418 338 162 51 chrX 18645559 18645704 -158328436 + L2 LINE L2 2675 2929 -385 259 349 0 66 chrX 18645733 18645839 -158328301 + L2 LINE L2 2980 3078 -194 764 324 116 31 chrX 18645841 18646323 -158327817 - LTR33A LTR ERVL 0 523 1 263 302 85 0 chrX 18646398 18646504 -158327636 + L2 LINE L2 3182 3296 -17 1471 252 69 84 chrX 18647171 18647771 -158326369 - MLT1E LTR MaLR -2 591 1 2523 62 0 0 chrX 18649068 18649377 -158324763 + AluY SINE Alu 1 309 -2 273 392 133 3 chrX 18650108 18650440 -158323700 + L2 LINE L2 2324 2698 -616 202 385 0 13 chrX 18650586 18650664 -158323476 + L2 LINE L2 3001 3077 -195 23 0 0 0 chrX 18650973 18650996 -158323144 + AT_rich Low_complexity Low_complexity 1 23 0 237 248 57 67 chrX 18651023 18651128 -158323012 - MIR SINE MIR -108 154 51 518 333 46 0 chrX 18652039 18652234 -158321906 - MIR SINE MIR -51 211 8 3065 86 12 5 chrX 18653845 18654276 -158319864 + L1PA8 LINE L1 5738 6171 -1 375 314 8 8 chrX 18654525 18654643 -158319497 + MIR SINE MIR 5 122 -140 466 233 8 50 chrX 18655559 18655679 -158318461 + MER20 DNA MER1_type 2 116 -103 2387 170 6 46 chrX 18655944 18656421 -158317719 + MER101 LTR ERV1 17 474 0 25 0 0 0 chrX 18656454 18656479 -158317661 + AT_rich Low_complexity Low_complexity 1 25 0 2151 84 30 3 chrX 18656587 18656883 -158317257 + AluSp SINE Alu 1 304 -9 371 280 21 21 chrX 18657840 18657983 -158316157 + MLT1H LTR MaLR 12 154 -395 289 238 12 60 chrX 18658330 18658414 -158315726 + L2 LINE L2 3234 3313 0 1643 313 44 18 chrX 18658455 18659334 -158314806 - L2 LINE L2 0 3313 2412 1954 125 3 99 chrX 18659598 18659982 -158314158 - MER7A DNA MER2_type -1 345 1 285 57 0 0 chrX 18660085 18660120 -158314020 + U2 snRNA snRNA 1 35 -153 266 291 51 98 chrX 18660448 18660682 -158313458 + MIR SINE MIR 9 231 -31 30 27 0 0 chrX 18661153 18661190 -158312950 + AT_rich Low_complexity Low_complexity 1 37 0 514 329 51 8 chrX 18661751 18661985 -158312155 + MIR SINE MIR 1 244 -18 2068 127 0 19 chrX 18662736 18663052 -158311088 - AluSq SINE Alu -3 310 1 282 148 0 0 chrX 18665767 18665821 -158308319 + (GAA)n Simple_repeat Simple_repeat 1 54 0 616 220 30 32 chrX 18666464 18666691 -158307449 - MLT1C LTR MaLR -51 415 194 2060 142 0 3 chrX 18666706 18667001 -158307139 - AluSx SINE Alu -18 294 1 8179 57 6 214 chrX 18667094 18668840 -158305300 - SVA Other Other -3 1383 1 1587 171 4 4 chrX 18669962 18670214 -158303926 - AluJo SINE Alu -14 298 47 263 315 2 32 chrX 18670931 18671065 -158303075 + MIR SINE MIR 6 135 -73 258 242 30 0 chrX 18671800 18671866 -158302274 - HERVL40 LTR ERVL -335 2702 2635 764 265 74 27 chrX 18672185 18672483 -158301657 - HERVL40 LTR ERVL -690 2347 2036 733 243 92 5 chrX 18672486 18672692 -158301448 - HERVL40 LTR ERVL -1240 4290 4067 2075 28 0 0 chrX 18672692 18672946 -158301194 - L1PA4 LINE L1 -263 5892 5639 2246 34 0 0 chrX 18672946 18673213 -158300927 + L1PA4 LINE L1 5887 6155 0 949 218 43 9 chrX 18673270 18673481 -158300659 - MER20 DNA MER1_type -1 218 1 2237 156 5 5 chrX 18673760 18674150 -158299990 + MLT1B LTR MaLR 1 390 0 275 287 59 40 chrX 18674234 18674335 -158299805 - MIR SINE MIR -1 261 159 820 326 68 9 chrX 18674336 18674774 -158299366 + LTR16B LTR ERVL 1 464 0 189 302 123 28 chrX 18674788 18674894 -158299246 - MIR3 SINE MIR -81 127 12 2744 84 16 0 chrX 18675740 18676109 -158298031 - THE1C LTR MaLR 0 375 1 220 26 0 51 chrX 18676117 18676156 -158297984 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2191 104 0 0 chrX 18676156 18676434 -158297706 - AluSx SINE Alu -34 278 1 2273 105 0 6 chrX 18677573 18677888 -158296252 + AluSq SINE Alu 1 313 0 216 0 0 0 chrX 18678212 18678236 -158295904 + (TA)n Simple_repeat Simple_repeat 2 25 0 1462 225 36 47 chrX 18678236 18678708 -158295432 + MLT1D LTR MaLR 39 505 0 2297 114 0 0 chrX 18678735 18679032 -158295108 + AluSg SINE Alu 1 297 -13 320 284 22 5 chrX 18679169 18679367 -158294773 + L1M1 LINE L1 5605 5806 -365 701 196 0 8 chrX 18679473 18679606 -158294534 + FLAM_C SINE Alu 1 132 -11 3893 121 14 20 chrX 18679627 18680265 -158293875 + MER41B LTR ERV1 2 635 0 1573 207 0 17 chrX 18680320 18680620 -158293520 + AluJo SINE Alu 1 295 -17 2018 142 10 0 chrX 18680692 18680987 -158293153 + AluSx SINE Alu 1 298 -14 861 214 70 31 chrX 18681203 18681641 -158292499 - LTR48B LTR ERV1 0 644 137 2579 145 109 2 chrX 18681858 18682307 -158291833 + MER61D LTR ERV1 5 501 0 638 156 22 37 chrX 18682322 18682457 -158291683 + MER61D-int LTR ERV1 17 149 -5068 4108 169 24 30 chrX 18682838 18682981 -158291159 + MER61D-int LTR ERV1 598 740 -4477 2338 73 7 7 chrX 18682981 18683282 -158290858 - AluSq SINE Alu -12 301 1 4108 169 24 30 chrX 18683282 18683754 -158290386 + MER61D-int LTR ERV1 740 1214 -4003 8482 38 8 2 chrX 18683754 18684755 -158289385 + LTR13 LTR ERVK 1 1007 0 4108 169 24 30 chrX 18684755 18685961 -158288179 + MER61D-int LTR ERV1 1214 4824 -393 541 120 0 0 chrX 18685961 18686036 -158288104 + AluS SINE Alu 1 75 -238 2086 133 35 6 chrX 18686036 18686382 -158287758 + MER61D LTR ERV1 146 501 0 1737 153 5 6 chrX 18686971 18687531 -158286609 + LTR39 LTR ERV1 164 783 0 1032 269 63 34 chrX 18687965 18688412 -158285728 - L1MEc LINE L1 -5880 516 57 444 276 42 14 chrX 18688993 18689210 -158284930 - Charlie2 DNA MER1_type -91 2771 2549 788 229 43 91 chrX 18689255 18689696 -158284444 + LTR37B LTR ERV1 1 420 -48 295 254 50 54 chrX 18689698 18689958 -158284182 - Charlie2 DNA MER1_type -366 2496 2238 1850 220 67 18 chrX 18689987 18690530 -158283610 - Charlie2a DNA MER1_type -1830 1032 463 309 95 0 0 chrX 18690530 18690572 -158283568 - LOR1b LTR ERV1 0 461 420 313 274 105 0 chrX 18690899 18690994 -158283146 + L1ME1 LINE L1 4488 4592 -1554 30 45 0 0 chrX 18691009 18691053 -158283087 + AT_rich Low_complexity Low_complexity 1 44 0 297 243 0 0 chrX 18691456 18691526 -158282614 + L1P LINE L1 4900 4969 -1177 237 312 81 11 chrX 18691836 18692022 -158282118 + L1ME1 LINE L1 5352 5550 -628 417 160 1 29 chrX 18692090 18692194 -158281946 + L1ME1 LINE L1 5703 5805 -366 902 182 39 107 chrX 18692203 18692483 -158281657 - MLT1B LTR MaLR 0 390 130 894 200 28 47 chrX 18692484 18692645 -158281495 - MLT1C LTR MaLR -211 256 100 2595 129 31 10 chrX 18692645 18693062 -158281078 - MSTA LTR MaLR 0 428 3 894 200 28 47 chrX 18693062 18693155 -158280985 - MLT1C LTR MaLR -367 100 7 488 276 62 22 chrX 18693159 18693497 -158280643 + L1ME1 LINE L1 5831 6331 -3 228 67 0 0 chrX 18693623 18693653 -158280487 + (TA)n Simple_repeat Simple_repeat 1 30 0 27 92 0 0 chrX 18694358 18694434 -158279706 + AT_rich Low_complexity Low_complexity 1 76 0 23 0 0 0 chrX 18695737 18695760 -158278380 + AT_rich Low_complexity Low_complexity 1 23 0 1767 155 0 57 chrX 18695915 18696231 -158277909 + AluJb SINE Alu 1 298 -14 1708 170 0 44 chrX 18696404 18696721 -158277419 - AluJb SINE Alu -9 303 1 598 133 95 0 chrX 18697449 18697554 -158276586 - FLAM_A SINE Alu -15 118 4 210 71 0 0 chrX 18702545 18702573 -158271567 + (TC)n Simple_repeat Simple_repeat 2 29 0 414 0 0 0 chrX 18702575 18702621 -158271519 + (CA)n Simple_repeat Simple_repeat 1 46 0 6721 104 6 16 chrX 18703506 18704610 -158269530 - L1MA2 LINE L1 0 6304 5212 17311 153 55 24 chrX 18704612 18704802 -158269338 - L1M1 LINE L1 -4173 3392 3209 2053 136 0 3 chrX 18704802 18705112 -158269028 - AluSx SINE Alu -3 309 1 17311 153 55 24 chrX 18705112 18708199 -158265941 - L1M1 LINE L1 -4356 3209 12 3371 191 49 33 chrX 18708236 18709501 -158264639 - L1MB8 LINE L1 0 6178 4884 469 216 54 45 chrX 18709514 18709736 -158264404 + Charlie1 DNA MER1_type 2533 2756 -5 3013 165 34 0 chrX 18909930 18910468 -158063672 + L1MA9 LINE L1 5419 5974 -338 736 184 0 0 chrX 18910464 18910605 -158063535 - L1 LINE L1 -1154 4992 4852 * 1909 161 18 0 chrX 18910611 18910941 -158063199 + L1PB4 LINE L1 5807 6142 -14 1789 149 26 23 chrX 18910958 18911111 -158063029 + L1MA9 LINE L1 5961 6112 -200 1414 183 93 19 chrX 18911111 18911434 -158062706 - MER7A DNA MER2_type -1 345 1 1789 149 26 23 chrX 18911434 18911630 -158062510 + L1MA9 LINE L1 6112 6311 -1 226 268 10 10 chrX 18911725 18911822 -158062318 + CT-rich Low_complexity Low_complexity 4 100 0 281 317 28 14 chrX 18912339 18912484 -158061656 + HAL1 LINE L1 1112 1258 -1249 360 176 40 0 chrX 18912605 18912679 -158061461 + MLT1D LTR MaLR 429 505 0 387 308 95 46 chrX 18913438 18913805 -158060335 + L1MC/D LINE L1 4905 5289 -857 1170 264 57 10 chrX 18913813 18914196 -158059944 + L1MC/D LINE L1 5319 5719 -2089 1756 178 11 0 chrX 18914213 18914494 -158059646 + AluJo SINE Alu 5 288 -24 2073 138 0 19 chrX 18914654 18914965 -158059175 + AluSx SINE Alu 1 305 -7 1037 127 16 19 chrX 18914977 18915190 -158058950 + L1MB2 LINE L1 5101 5310 -854 437 219 80 36 chrX 18915194 18915331 -158058809 + L1MC/D LINE L1 5560 5702 -2106 5508 86 56 4 chrX 18915368 18916196 -158057944 + L1MA2 LINE L1 5433 6303 -1 2372 97 0 7 chrX 18916214 18916522 -158057618 + AluSx SINE Alu 1 306 -6 22 0 0 0 chrX 18916728 18916750 -158057390 + AT_rich Low_complexity Low_complexity 1 22 0 1491 189 108 44 chrX 18917025 18917368 -158056772 - MLT1A1 LTR MaLR 0 365 1 226 224 0 20 chrX 18919248 18919297 -158054843 + MER5A DNA MER1_type 4 51 -138 1663 181 46 38 chrX 18919297 18919481 -158054659 + MLT1B LTR MaLR 1 182 -208 387 0 0 0 chrX 18919481 18919524 -158054616 + (TC)n Simple_repeat Simple_repeat 2 44 0 1663 181 46 38 chrX 18919524 18919710 -158054430 + MLT1B LTR MaLR 182 374 -16 548 239 51 0 chrX 18919716 18919854 -158054286 + MER5A DNA MER1_type 45 189 0 201 232 89 18 chrX 18921043 18921099 -158053041 + L2 LINE L2 3206 3265 -7 17276 69 7 5 chrX 18922319 18924608 -158049532 - L1P LINE L1 -3854 2292 1 2600 161 33 4 chrX 18924606 18925065 -158049075 + L1MB2 LINE L1 5623 6094 -77 * 407 200 0 0 chrX 18925068 18925138 -158049002 + FAM SINE Alu 89 158 -27 3263 125 101 12 chrX 18925163 18925737 -158048403 - L1PB4 LINE L1 -2 6154 5530 4020 109 6 19 chrX 18925737 18925998 -158048142 - L1PA14 LINE L1 -2 6159 5896 1858 167 0 3 chrX 18925998 18926297 -158047843 - AluJb SINE Alu -14 298 1 4020 109 6 19 chrX 18926297 18926660 -158047480 - L1PA14 LINE L1 -265 5896 5542 6738 181 18 12 chrX 18926661 18928534 -158045606 - L1PA12 LINE L1 -3766 3818 1926 2406 160 60 8 chrX 18928558 18929267 -158044873 - L1PB4 LINE L1 -624 5542 4806 394 331 71 39 chrX 18929263 18929571 -158044569 - L1M2 LINE L1 -6528 321 4 * 231 218 0 0 chrX 18929599 18929654 -158044486 + L1MB2 LINE L1 6116 6170 -1 472 340 115 32 chrX 18929709 18930109 -158044031 + L2 LINE L2 2881 3313 0 2280 146 26 81 chrX 18931578 18932085 -158042055 - L1MB2 LINE L1 0 6171 5693 264 301 57 67 chrX 18932090 18932107 -158042033 + MER20 DNA MER1_type 7 23 -196 2529 70 21 49 chrX 18932107 18932493 -158041647 + THE1C LTR MaLR 1 375 0 264 301 57 67 chrX 18932493 18932684 -158041456 + MER20 DNA MER1_type 23 213 -6 568 248 80 118 chrX 18932888 18933183 -158040957 + MER34 LTR ERV1 1 306 -236 2122 136 128 10 chrX 18933183 18933566 -158040574 + MSTA LTR MaLR 1 428 0 568 248 80 118 chrX 18933566 18933724 -158040416 + MER34 LTR ERV1 306 432 -110 2285 98 3 0 chrX 18933724 18934021 -158040119 + AluSq SINE Alu 1 298 -15 568 248 80 118 chrX 18934021 18934126 -158040014 + MER34 LTR ERV1 432 539 -3 303 250 65 28 chrX 18934491 18934599 -158039541 - L1ME3A LINE L1 -214 5956 5845 1181 176 135 51 chrX 18934792 18934970 -158039170 + LTR37A LTR ERV1 1 163 -263 396 0 0 0 chrX 18934970 18935014 -158039126 + (CA)n Simple_repeat Simple_repeat 2 45 0 1181 176 135 51 chrX 18935014 18935228 -158038912 + LTR37A LTR ERV1 163 426 0 216 97 0 0 chrX 18935689 18935720 -158038420 + (CA)n Simple_repeat Simple_repeat 2 32 0 33 94 0 0 chrX 18936308 18936404 -158037736 + AT_rich Low_complexity Low_complexity 1 96 0 2259 113 0 3 chrX 18936456 18936767 -158037373 - AluSq SINE Alu -3 310 1 37 62 0 0 chrX 18936812 18936877 -158037263 + AT_rich Low_complexity Low_complexity 1 65 0 13809 44 2 5 chrX 18937138 18939626 -158034514 - L1PA5 LINE L1 -3 6151 3666 450 175 3 37 chrX 18939896 18940021 -158034119 + L1M3 LINE L1 5236 5359 -787 269 316 13 0 chrX 18940084 18940163 -158033977 + MER82 DNA MER2_type 48 127 -526 8143 132 35 11 chrX 18940163 18941558 -158032582 - Ricksha DNA DNA -39 3207 1821 1726 156 3 3 chrX 18941556 18941838 -158032302 - Ricksha DNA DNA -966 288 7 * 1542 169 0 22 chrX 18941840 18942118 -158032022 + L1M3 LINE L1 5345 5616 -567 693 260 97 50 chrX 18942118 18942457 -158031683 - LTR16C LTR ERVL -23 468 114 224 261 91 11 chrX 18943086 18943174 -158030966 + MIR3 SINE MIR 105 199 -9 252 149 68 0 chrX 18943547 18943621 -158030519 + (TA)n Simple_repeat Simple_repeat 1 79 0 761 191 105 34 chrX 18944742 18944951 -158029189 - MER58A DNA MER1_type 0 224 1 264 289 106 10 chrX 18945153 18945257 -158028883 + MIR SINE MIR 99 212 -50 5893 96 8 9 chrX 18945513 18946367 -158027773 - L1PA15 LINE L1 -2 6163 5311 467 250 189 0 chrX 18946572 18946720 -158027420 + L2 LINE L2 2190 2365 -949 780 353 74 18 chrX 18946727 18947263 -158026877 + L2 LINE L2 2475 3042 -271 584 343 53 4 chrX 18947262 18947507 -158026633 + MIR SINE MIR 6 262 0 * 35 24 0 0 chrX 18947606 18947648 -158026492 + AT_rich Low_complexity Low_complexity 1 42 0 599 234 8 0 chrX 18947685 18947809 -158026331 + L2 LINE L2 3186 3310 -3 2486 68 0 0 chrX 18948212 18948523 -158025617 + AluY SINE Alu 1 311 0 25 0 0 0 chrX 18948627 18948652 -158025488 + AT_rich Low_complexity Low_complexity 1 25 0 2331 71 0 43 chrX 18949603 18949928 -158024212 + AluY SINE Alu 1 311 0 26 52 0 17 chrX 18949959 18949973 -158024167 + AT_rich Low_complexity Low_complexity 1 14 -43 2078 69 3 100 chrX 18949973 18950293 -158023847 + AluSq SINE Alu 1 289 -24 26 52 0 17 chrX 18950293 18950336 -158023804 + AT_rich Low_complexity Low_complexity 14 57 0 1965 162 31 11 chrX 18950618 18950970 -158023170 - MLT1A1 LTR MaLR -6 359 1 2488 63 7 0 chrX 18951578 18951880 -158022260 - AluSp SINE Alu -9 304 1 1858 209 37 28 chrX 18952154 18952617 -158021523 + MLT1C LTR MaLR 1 467 0 1883 178 14 17 chrX 18952874 18953223 -158020917 + MER7A DNA MER2_type 1 346 0 398 315 129 47 chrX 18953472 18954240 -158019900 + L1 LINE L1 2894 3724 -2422 2263 143 34 31 chrX 18954372 18954790 -158019350 - MSTB1 LTR MaLR -13 419 1 313 354 69 22 chrX 18954831 18955108 -158019032 - L1 LINE L1 -1446 4700 4411 226 200 40 0 chrX 18955318 18955368 -158018772 - L1 LINE L1 -3429 2717 2666 3859 140 10 2 chrX 18955373 18955987 -158018153 + L1PB4 LINE L1 5436 6054 -102 8940 101 19 3 chrX 18955996 18957229 -158016911 + HSMAR1 DNA Mariner 4 1255 -32 365 119 0 45 chrX 18957231 18957298 -158016842 + L1PA16 LINE L1 6087 6150 -16 520 298 148 45 chrX 18957374 18957793 -158016347 - L1 LINE L1 -3572 2574 2113 1578 199 115 21 chrX 18958085 18958563 -158015577 + Charlie1b DNA MER1_type 1 523 0 1125 77 26 0 chrX 18959135 18959290 -158014850 - L1MA3 LINE L1 -1 6304 6146 21 0 0 0 chrX 18959894 18959915 -158014225 + AT_rich Low_complexity Low_complexity 1 21 0 231 310 20 42 chrX 18960265 18960382 -158013758 + MIR SINE MIR 22 141 -67 31 58 0 0 chrX 18960723 18960775 -158013365 + AT_rich Low_complexity Low_complexity 1 52 0 421 171 0 0 chrX 18960924 18960994 -158013146 + AluJb SINE Alu 1 70 -242 1469 143 0 9 chrX 18961032 18961263 -158012877 + AluJb SINE Alu 73 301 -11 420 254 15 62 chrX 18961515 18961645 -158012495 - L2 LINE L2 0 3313 3190 5290 112 45 2 chrX 18962354 18963157 -158010983 - L1PA14 LINE L1 0 6161 5325 2244 72 7 0 chrX 18963165 18963443 -158010697 - AluSp SINE Alu -16 297 18 1874 73 44 0 chrX 18963443 18963718 -158010422 + L1MA5 LINE L1 6012 6298 -2 2630 175 13 0 chrX 18963751 18964225 -158009915 + L1MA8 LINE L1 5591 6070 -221 2155 106 7 3 chrX 18964262 18964555 -158009585 + AluSq SINE Alu 1 294 -19 380 324 35 12 chrX 18964774 18964947 -158009193 + MER69A DNA AcHobo 1 177 0 800 259 10 0 chrX 18965897 18966090 -158008050 - L2 LINE L2 -983 2331 2137 23 0 0 0 chrX 18966819 18966842 -158007298 + AT_rich Low_complexity Low_complexity 1 23 0 42 57 0 0 chrX 18967933 18968003 -158006137 + GC_rich Low_complexity Low_complexity 1 70 0 28 0 0 0 chrX 18968056 18968084 -158006056 + GC_rich Low_complexity Low_complexity 1 28 0 1559 171 25 4 chrX 18968587 18968867 -158005273 - MLT1C LTR MaLR -50 417 132 362 305 150 0 chrX 18969172 18969339 -158004801 - L1ME LINE L1 -3459 2621 2430 311 312 50 7 chrX 18969796 18969937 -158004203 - L1ME LINE L1 -5887 183 37 1497 164 47 3 chrX 18970640 18970939 -158003201 - L1MA7 LINE L1 -7 6284 5973 420 20 0 0 chrX 18971405 18971454 -158002686 + (TG)n Simple_repeat Simple_repeat 2 50 0 630 178 14 62 chrX 18971955 18972101 -158002039 + L1ME LINE L1 3996 4134 -2012 * 3602 209 65 17 chrX 18972099 18973223 -158000917 + L1ME LINE L1 4421 5599 -567 1016 199 76 0 chrX 18973227 18973518 -158000622 + L1 LINE L1 3029 3341 -2805 566 105 21 0 chrX 18973520 18973615 -158000525 + L1PB2 LINE L1 6046 6142 -9 6377 187 32 30 chrX 18973770 18974715 -157999425 + L1MA8 LINE L1 3207 4149 -2142 1664 185 11 0 chrX 18974715 18974991 -157999149 + AluJb SINE Alu 1 279 -33 189 0 0 0 chrX 18974995 18975016 -157999124 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6377 187 32 30 chrX 18975016 18976111 -157998029 + L1MA8 LINE L1 4151 5288 -1003 2055 118 0 55 chrX 18976111 18976441 -157997699 + AluSx SINE Alu 1 312 0 6377 187 32 30 chrX 18976441 18977441 -157996699 + L1MA8 LINE L1 5288 6285 -6 233 189 0 0 chrX 18977454 18977507 -157996633 + L1MB4 LINE L1 6127 6179 -1 234 320 62 23 chrX 18977520 18977648 -157996492 + MIR SINE MIR 20 152 -110 6949 181 12 8 chrX 18977654 18979112 -157995028 - L1PA15 LINE L1 -1 6164 4695 291 28 0 0 chrX 18979112 18979148 -157994992 + (TTC)n Simple_repeat Simple_repeat 2 37 0 6949 181 12 8 chrX 18979148 18979859 -157994281 - L1PA15 LINE L1 -1470 4695 3989 309 250 150 0 chrX 18980531 18980631 -157993509 + MER92B LTR ERV1 1 115 -521 339 194 0 0 chrX 18980781 18980848 -157993292 + MER92C LTR ERV1 487 553 -1 746 182 10 134 chrX 18981250 18981541 -157992599 + MER31-int LTR ERV1 1039 1293 -3643 1286 233 33 100 chrX 18981890 18982379 -157991761 + MER31-int LTR ERV1 3778 4233 -703 502 209 16 39 chrX 18982396 18982525 -157991615 + LTR37A LTR ERV1 1 126 -300 257 150 0 0 chrX 18982583 18982623 -157991517 + MER31-int LTR ERV1 4330 4369 -567 390 237 10 0 chrX 18982662 18982759 -157991381 + MER31-int LTR ERV1 4372 4469 -467 260 260 0 39 chrX 18982826 18982903 -157991237 + MER31-int LTR ERV1 4482 4555 -381 310 231 0 0 chrX 18983360 18983425 -157990715 + MER92B LTR ERV1 1 65 -571 360 167 30 0 chrX 18983645 18983711 -157990429 + MER92C LTR ERV1 487 554 0 16889 105 8 15 chrX 18984494 18987409 -157986731 - L1P3 LINE L1 -2786 3675 763 576 311 56 20 chrX 18987413 18987770 -157986370 - L1MC/D LINE L1 -1988 5820 5451 292 252 14 35 chrX 18987773 18987916 -157986224 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 2983 198 15 65 chrX 18987938 18988615 -157985525 - MER82 DNA MER2_type -10 643 1 1587 31 5 0 chrX 18988730 18988924 -157985216 - L1PA4 LINE L1 -3 6152 5958 412 214 16 8 chrX 18988945 18989071 -157985069 + L1ME1 LINE L1 5100 5226 -920 270 0 0 0 chrX 18989086 18989116 -157985024 + (TG)n Simple_repeat Simple_repeat 2 31 0 747 206 19 0 chrX 18989279 18989439 -157984701 + MLT1C LTR MaLR 305 467 0 24 0 0 0 chrX 18989917 18989941 -157984199 + AT_rich Low_complexity Low_complexity 1 24 0 357 286 173 1 chrX 18990255 18990454 -157983686 + MIR SINE MIR 34 262 0 2536 172 36 12 chrX 18990618 18991111 -157983029 + MLT1D LTR MaLR 1 505 0 1208 248 94 64 chrX 18991140 18991672 -157982468 - MLT1H LTR MaLR -1 548 1 29 0 0 0 chrX 18992589 18992618 -157981522 + AT_rich Low_complexity Low_complexity 1 29 0 297 206 48 0 chrX 18992620 18992683 -157981457 - L1MD2 LINE L1 -235 6124 6059 * 1218 205 4 0 chrX 18992680 18992929 -157981211 + L1ME1 LINE L1 5680 5929 -237 196 390 45 19 chrX 18992929 18993083 -157981057 + L2 LINE L2 2595 2752 -562 3170 81 25 0 chrX 18993265 18993736 -157980404 + L1P LINE L1 3530 4012 -2134 394 312 26 64 chrX 18993767 18994001 -157980139 - L1MEd LINE L1 -2580 3549 3325 4885 158 43 14 chrX 18994007 18994977 -157979163 - L1MB2 LINE L1 0 6171 5172 373 191 247 12 chrX 18995111 18995273 -157978867 - L1MEd LINE L1 -2920 3209 3010 333 262 159 24 chrX 18995442 18995694 -157978446 - L1MEd LINE L1 -4908 1211 926 22 0 0 0 chrX 18995707 18995729 -157978411 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chrX 18995774 18995804 -157978336 + (TTG)n Simple_repeat Simple_repeat 2 31 0 420 364 20 54 chrX 18995848 18996145 -157977995 - L1MEd LINE L1 -5730 389 103 867 125 7 0 chrX 18996268 18996412 -157977728 + L1MA4A LINE L1 6147 6291 -12 222 357 71 0 chrX 18996665 18996791 -157977349 + L3 LINE CR1 940 1074 -503 569 330 115 3 chrX 18996824 18997172 -157976968 + L3 LINE CR1 1190 1576 -1 2182 181 20 10 chrX 18997657 18998054 -157976086 + MLT1C LTR MaLR 3 403 -64 552 229 25 8 chrX 18998444 18998566 -157975574 - FLAM_C SINE Alu -9 124 1 1011 186 11 0 chrX 18998571 18998754 -157975386 + Tigger1 DNA MER2_type 2231 2415 -3 242 279 112 6 chrX 18998757 18998918 -157975222 - L1M4 LINE L1 -2380 3766 3589 243 0 0 0 chrX 18998921 18998948 -157975192 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 9815 35 0 0 chrX 18998954 19000899 -157973241 - L1PA3 LINE L1 -3 6152 4206 7713 32 2 0 chrX 19000899 19001859 -157972281 + L1P LINE L1 2515 3476 -2670 2219 33 0 7 chrX 19002021 19002292 -157971848 + L1PA4 LINE L1 5887 6155 0 2245 181 55 4 chrX 19002306 19003017 -157971123 - L1M3 LINE L1 -544 5639 4887 22 35 0 0 chrX 19003025 19003054 -157971086 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 19004984 19005007 -157969133 + AT_rich Low_complexity Low_complexity 1 23 0 352 311 27 12 chrX 19005285 19005510 -157968630 - L1ME4a LINE L1 -216 5905 5674 21646 41 8 2 chrX 19005672 19008596 -157965544 + L1P2 LINE L1 2736 5682 -472 424 366 45 24 chrX 19009366 19009612 -157964528 + MIR SINE MIR 3 253 -9 1808 111 49 85 chrX 19010467 19010856 -157963284 + THE1C LTR MaLR 1 375 0 207 69 0 0 chrX 19011833 19011862 -157962278 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 329 242 50 43 chrX 19012585 19012746 -157961394 - MER103 DNA DNA -2 164 3 331 143 18 0 chrX 19013132 19013188 -157960952 - THE1C LTR MaLR 0 375 319 415 160 287 7 chrX 19013926 19014060 -157960080 - MER5A DNA MER1_type -10 179 4 398 389 36 16 chrX 19014294 19014541 -157959599 + L3 LINE CR1 217 468 -1109 255 365 24 16 chrX 19014807 19014933 -157959207 + L3 LINE CR1 500 626 -951 256 225 56 0 chrX 19016915 19016986 -157957154 - MER20 DNA MER1_type -143 76 2 496 241 146 50 chrX 19017466 19017727 -157956413 - L2 LINE L2 -1153 2161 1876 207 0 0 0 chrX 19017735 19017758 -157956382 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2018 110 22 0 chrX 19017758 19018030 -157956110 - AluSx SINE Alu -34 278 1 277 344 82 6 chrX 19018335 19018518 -157955622 + L3b LINE CR1 1145 1341 -242 22 80 0 0 chrX 19018944 19018994 -157955146 + AT_rich Low_complexity Low_complexity 1 50 0 270 318 135 41 chrX 19019512 19019682 -157954458 - MIR SINE MIR -70 192 7 427 136 48 87 chrX 19019683 19019786 -157954354 + MER92B LTR ERV1 1 99 -537 2271 79 41 0 chrX 19019799 19020090 -157954050 - AluSg SINE Alu -7 303 1 1547 132 47 27 chrX 19020090 19020347 -157953793 - MER1B DNA MER1_type -6 333 72 887 221 9 9 chrX 19020482 19020695 -157953445 - L1M3 LINE L1 -716 5467 5255 287 87 0 0 chrX 19021120 19021166 -157952974 - L1MA3 LINE L1 0 6305 6260 386 207 4 100 chrX 19022573 19022718 -157951422 - MLT1H LTR MaLR -246 191 28 276 120 0 0 chrX 19024375 19024425 -157949715 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1913 119 20 13 chrX 19025048 19025350 -157948790 - AluSx SINE Alu -8 304 1 303 253 112 79 chrX 19025504 19025682 -157948458 - L1M2 LINE L1 -5909 940 757 2937 226 21 7 chrX 19025744 19026649 -157947491 + L1MDa LINE L1 2482 3398 -3142 444 181 0 12 chrX 19026721 19026804 -157947336 + L1MB7 LINE L1 5068 5149 -997 4208 166 25 6 chrX 19026815 19027600 -157946540 + L1MB7 LINE L1 5376 6175 -9 339 260 65 49 chrX 19027721 19027844 -157946296 - L2 LINE L2 -5 3308 3184 746 287 26 17 chrX 19028765 19028995 -157945145 + MIR SINE MIR 31 262 0 1033 246 109 67 chrX 19029358 19029756 -157944384 - MLT1H1 LTR MaLR -9 546 119 2561 60 0 0 chrX 19029756 19030058 -157944082 - AluY SINE Alu -9 302 1 1033 246 109 67 chrX 19030058 19030183 -157943957 - MLT1H1 LTR MaLR -436 119 1 825 264 61 32 chrX 19031191 19031502 -157942638 + L1MDa LINE L1 88 407 -6133 320 342 66 57 chrX 19031684 19031912 -157942228 + L1MDa LINE L1 413 642 -5898 286 285 63 105 chrX 19032129 19032428 -157941712 + L1MDa LINE L1 789 1006 -5534 4020 212 48 78 chrX 19032472 19033913 -157940227 + L1MDa LINE L1 991 2387 -4153 2123 126 16 40 chrX 19033918 19034291 -157939849 + THE1B LTR MaLR 1 364 0 439 312 77 27 chrX 19034475 19034696 -157939444 + MIR SINE MIR 1 232 -30 1368 148 22 134 chrX 19034701 19035112 -157939028 + MLT1A1 LTR MaLR 1 365 0 809 253 0 6 chrX 19035569 19035747 -157938393 + MER5B DNA MER1_type 2 178 0 384 239 33 0 chrX 19035765 19035857 -157938283 + MER5A DNA MER1_type 12 106 -83 1713 261 57 6 chrX 19036141 19036655 -157937485 + MLT1F LTR MaLR 1 588 -2 1915 223 71 9 chrX 19038046 19038495 -157935645 + MLT1D LTR MaLR 29 505 0 420 270 137 58 chrX 19038667 19039011 -157935129 + L1MC4a LINE L1 5537 5907 -1901 67 60 0 0 chrX 19039615 19039731 -157934409 + AT_rich Low_complexity Low_complexity 1 116 0 361 303 70 38 chrX 19040265 19040450 -157933690 + MIR SINE MIR 65 255 -7 2353 53 0 3 chrX 19040483 19040826 -157933314 - AluY SINE Alu 0 342 1 425 266 35 0 chrX 19040866 19040979 -157933161 - MIR3 SINE MIR -52 156 40 1227 220 39 15 chrX 19041497 19041834 -157932306 + L1MB8 LINE L1 5828 6172 -6 2217 113 0 16 chrX 19043050 19043361 -157930779 - AluSg SINE Alu -4 306 1 3303 127 14 15 chrX 19045194 19045712 -157928428 - Tigger1 DNA MER2_type -1901 517 1 570 192 24 24 chrX 19046119 19046244 -157927896 + LTR37A LTR ERV1 7 131 -295 238 273 36 18 chrX 19046808 19046918 -157927222 + (CCCG)n Simple_repeat Simple_repeat 4 115 0 23 40 0 0 chrX 19046930 19046955 -157927185 + GC_rich Low_complexity Low_complexity 1 25 0 432 91 0 0 chrX 19047137 19047203 -157926937 + (TG)n Simple_repeat Simple_repeat 2 67 0 339 319 85 0 chrX 19047535 19047676 -157926464 + MIR SINE MIR 104 256 -6 1431 185 32 12 chrX 19049132 19049209 -157924931 - MER89 LTR ERV1 -65 494 420 2445 112 43 14 chrX 19049209 19049629 -157924511 + MSTB1 LTR MaLR 1 432 0 1431 185 32 12 chrX 19049629 19049935 -157924205 - MER89 LTR ERV1 -139 420 4 24 0 0 0 chrX 19050196 19050220 -157923920 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chrX 19050300 19050339 -157923801 + AT_rich Low_complexity Low_complexity 1 39 0 320 301 124 18 chrX 19050472 19050585 -157923555 - MIR SINE MIR -63 145 21 3393 238 38 56 chrX 19050958 19052208 -157921932 + L1MC4 LINE L1 6815 8042 0 193 25 0 100 chrX 19052840 19052880 -157921260 + (TATG)n Simple_repeat Simple_repeat 3 38 0 348 24 0 0 chrX 19053062 19053103 -157921037 + (CA)n Simple_repeat Simple_repeat 1 41 0 888 174 12 12 chrX 19053226 19053387 -157920753 - MER58B DNA MER1_type 0 341 181 2363 89 0 3 chrX 19054309 19054611 -157919529 + AluSq SINE Alu 1 301 -12 1368 125 0 10 chrX 19055203 19055395 -157918745 - AluJb SINE Alu -120 192 3 187 205 0 26 chrX 19055399 19055438 -157918702 - MER5B DNA MER1_type -137 41 4 2369 71 0 3 chrX 19055682 19055977 -157918163 - AluSc SINE Alu -15 294 1 5611 44 0 0 chrX 19056025 19056702 -157917438 + L1PA6 LINE L1 5478 6154 0 405 229 101 22 chrX 19056908 19057087 -157917053 + AluJo SINE Alu 93 285 -27 1548 136 81 20 chrX 19057114 19057409 -157916731 - Tigger1 DNA MER2_type -187 2231 1919 1535 136 0 8 chrX 19057409 19057645 -157916495 + AluSg/x SINE Alu 78 311 -1 2776 106 16 31 chrX 19057645 19057865 -157916275 - Tigger1 DNA MER2_type -1391 1027 805 2311 91 13 0 chrX 19057865 19058174 -157915966 - AluSp SINE Alu 0 313 1 2776 106 16 31 chrX 19058174 19058406 -157915734 - Tigger1 DNA MER2_type -1613 805 582 255 61 0 0 chrX 19060096 19060129 -157914011 + (CATCT)n Simple_repeat Simple_repeat 3 35 0 1246 171 49 4 chrX 19060136 19060400 -157913740 + MER33 DNA MER1_type 1 276 -48 643 142 104 0 chrX 19060689 19060795 -157913345 - MER1B DNA MER1_type -180 117 1 1618 223 9 52 chrX 19060797 19061218 -157912922 + MER92B LTR ERV1 92 494 -142 932 112 0 0 chrX 19061218 19061230 -157912910 - L1MA8 LINE L1 -339 5952 5941 793 223 159 0 chrX 19061230 19061450 -157912690 - L1MA9 LINE L1 -226 5940 5686 666 205 8 16 chrX 19061453 19061702 -157912438 + L1MA9 LINE L1 5948 6290 -22 644 225 7 0 chrX 19061739 19061877 -157912263 + GA-rich Low_complexity Low_complexity 2 140 0 334 266 86 22 chrX 19061880 19062019 -157912121 + MER92B LTR ERV1 485 632 -4 352 175 0 0 chrX 19062234 19062310 -157911830 + L1MB7 LINE L1 6066 6141 -39 2288 98 0 0 chrX 19062319 19062624 -157911516 + AluY SINE Alu 1 305 -6 1562 212 40 8 chrX 19062628 19063029 -157911111 + L1 LINE L1 2683 3096 -3050 6081 43 7 1 chrX 19063460 19064632 -157909508 + L1PA5 LINE L1 4827 6004 -150 729 294 208 28 chrX 19064884 19065875 -157908265 + L2 LINE L2 994 2162 -1152 21 0 0 0 chrX 19066007 19066028 -157908112 + AT_rich Low_complexity Low_complexity 1 21 0 244 289 12 24 chrX 19066640 19066723 -157907417 + MLT1G1-int LTR MaLR 1028 1109 -262 1182 248 121 76 chrX 19067012 19067581 -157906559 + MLT1G1 LTR MaLR 1 595 0 326 345 14 7 chrX 19067984 19068123 -157906017 + L3b LINE CR1 1294 1433 -150 294 350 35 26 chrX 19068378 19068570 -157905570 + MIR SINE MIR 38 235 -27 236 261 115 39 chrX 19068770 19068900 -157905240 + MIR SINE MIR 67 206 -56 849 302 72 104 chrX 19068949 19070034 -157904106 - L3 LINE CR1 -127 1450 401 1015 31 79 0 chrX 19070108 19070235 -157903905 - MER85 DNA T2_type -2 137 1 21 36 0 0 chrX 19070783 19070811 -157903329 + AT_rich Low_complexity Low_complexity 1 28 0 188 417 48 0 chrX 19071078 19071162 -157902978 - L2 LINE L2 -31 3241 3154 34 24 0 0 chrX 19071742 19071783 -157902357 + AT_rich Low_complexity Low_complexity 1 41 0 725 294 73 63 chrX 19071791 19071832 -157902308 - LTR33A LTR ERVL -35 488 449 2224 118 49 0 chrX 19071832 19072179 -157901961 + THE1B LTR MaLR 1 364 0 725 294 73 63 chrX 19072179 19072614 -157901526 - LTR33A LTR ERVL -74 449 7 22 0 0 0 chrX 19072839 19072861 -157901279 + AT_rich Low_complexity Low_complexity 1 22 0 7058 65 9 0 chrX 19072992 19074309 -157899831 - L1PA7 LINE L1 -2 6152 4820 251 222 0 14 chrX 19274317 19274389 -157699751 + (TA)n Simple_repeat Simple_repeat 1 71 0 254 283 0 22 chrX 19274389 19274481 -157699659 + L1MC4 LINE L1 6614 6703 -1339 271 281 0 0 chrX 19274514 19274603 -157699537 + L1MC4 LINE L1 6615 6703 -1339 2308 138 22 0 chrX 19275428 19275784 -157698356 + THE1B LTR MaLR 1 364 0 312 91 0 0 chrX 19276442 19276486 -157697654 + (CA)n Simple_repeat Simple_repeat 2 45 0 31 44 0 0 chrX 19276983 19277028 -157697112 + AT_rich Low_complexity Low_complexity 1 45 0 234 156 0 0 chrX 19277029 19277074 -157697066 + GA-rich Low_complexity Low_complexity 4 48 0 308 312 95 62 chrX 19277381 19277769 -157696371 + L1ME4a LINE L1 4501 4901 -1245 1543 137 98 31 chrX 19277815 19278169 -157695971 + MSTA LTR MaLR 3 428 0 32 26 0 0 chrX 19278219 19278258 -157695882 + AT_rich Low_complexity Low_complexity 1 39 0 2233 115 0 6 chrX 19278386 19278698 -157695442 + AluSx SINE Alu 3 312 0 262 180 75 76 chrX 19278877 19279047 -157695093 + L1P5 LINE L1 5319 5489 -693 * 551 281 102 20 chrX 19279042 19279337 -157694803 + L1ME4a LINE L1 5509 5827 -294 581 279 80 63 chrX 19279431 19280093 -157694047 - L1MEc LINE L1 -3334 2881 2209 1896 97 19 59 chrX 19280134 19280454 -157693686 - AluSq SINE Alu -6 307 1 308 236 11 56 chrX 19280684 19280773 -157693367 + L2 LINE L2 3195 3279 -34 595 272 91 55 chrX 19280864 19281227 -157692913 - L1MEc LINE L1 -4642 1754 1405 2063 86 7 4 chrX 19281227 19281539 -157692601 - AluSg SINE Alu 0 313 1 595 272 91 55 chrX 19281539 19281902 -157692238 - L1MEc LINE L1 -4991 1405 1001 183 205 0 0 chrX 19282095 19282134 -157692006 + CT-rich Low_complexity Low_complexity 3 41 0 2918 81 74 25 chrX 19282258 19282690 -157691450 - MLT2A2 LTR ERVL 0 453 1 702 197 40 0 chrX 19282701 19282853 -157691287 + L1MA10 LINE L1 6170 6327 -7 278 314 39 58 chrX 19282967 19283174 -157690966 + L1ME4a LINE L1 5610 5812 -309 393 282 28 7 chrX 19283276 19283418 -157690722 + L1ME4a LINE L1 5968 6112 -9 6928 184 14 12 chrX 19284767 19286957 -157687183 - L1PA16 LINE L1 -179 5987 3798 3135 227 8 8 chrX 19286956 19287740 -157686400 + L1PA16 LINE L1 3014 3797 -2349 * 551 309 149 29 chrX 19288667 19289042 -157685098 - MLT1L LTR MaLR -6 609 190 236 290 14 0 chrX 19289463 19289532 -157684608 + MLT1J LTR MaLR 109 178 -333 24 77 0 0 chrX 19290975 19291027 -157683113 + AT_rich Low_complexity Low_complexity 1 52 0 194 192 0 14 chrX 19291067 19291140 -157683000 + (TA)n Simple_repeat Simple_repeat 1 72 0 214 377 49 0 chrX 19291772 19291833 -157682307 - MIR SINE MIR -184 78 15 2289 76 0 3 chrX 19292194 19292485 -157681655 + AluY SINE Alu 20 309 -2 21 0 0 0 chrX 19293551 19293572 -157680568 + AT_rich Low_complexity Low_complexity 1 21 0 225 330 39 29 chrX 19293690 19293793 -157680347 + L2 LINE L2 3209 3312 -1 485 268 56 45 chrX 19295186 19295365 -157678775 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chrX 19295432 19295453 -157678687 + AT_rich Low_complexity Low_complexity 1 21 0 983 245 100 10 chrX 19296773 19297083 -157677057 - MER58B DNA MER1_type 0 341 4 304 389 26 10 chrX 19297119 19297312 -157676828 - MIR SINE MIR -64 198 3 499 239 55 0 chrX 19297437 19297546 -157676594 - MER5A DNA MER1_type -13 176 62 3794 183 67 12 chrX 19297559 19298317 -157675823 - L1MB7 LINE L1 -23 6161 5362 412 125 0 0 chrX 19298317 19298381 -157675759 - MER5A DNA MER1_type -125 64 1 585 315 98 20 chrX 19298490 19298795 -157675345 - L2 LINE L2 -4 3309 2981 876 257 33 5 chrX 19298811 19299021 -157675119 + MIR SINE MIR 19 234 -28 328 263 13 0 chrX 19299029 19299105 -157675035 + MER69 DNA AcHobo 2 78 -1148 1018 278 142 34 chrX 19299229 19299819 -157674321 - L2 LINE L2 -339 2975 2322 514 99 0 0 chrX 19299984 19300055 -157674085 - MER39 LTR ERV1 -378 329 259 * 540 129 14 121 chrX 19300030 19300170 -157673970 - MER21A LTR ERV1 -733 198 74 495 0 0 0 chrX 19300322 19300377 -157673763 + (CA)n Simple_repeat Simple_repeat 2 56 0 185 277 223 0 chrX 19300498 19300610 -157673530 + L2 LINE L2 3176 3312 -1 244 385 71 12 chrX 19300719 19300888 -157673252 + MIR SINE MIR 28 206 -56 2296 76 0 13 chrX 19301614 19301917 -157672223 - AluSq SINE Alu -14 299 1 253 214 186 0 chrX 19302217 19302287 -157671853 + L2 LINE L2 3195 3277 -36 193 313 68 62 chrX 19302529 19302705 -157671435 - L2 LINE L2 -265 3007 2831 195 69 0 0 chrX 19303856 19303885 -157670255 + (T)n Simple_repeat Simple_repeat 1 29 0 393 256 80 24 chrX 19304846 19304971 -157669169 + MER117 DNA MER1_type 19 150 -47 207 355 58 0 chrX 19304993 19305114 -157669026 - L3 LINE CR1 -282 1295 1168 198 0 0 0 chrX 19305657 19305679 -157668461 + (T)n Simple_repeat Simple_repeat 1 22 0 390 185 12 0 chrX 19306406 19306487 -157667653 - L1MA8 LINE L1 -10 6281 6200 4395 173 48 29 chrX 19306488 19307347 -157666793 - L1 LINE L1 -2311 3835 2951 2366 92 0 0 chrX 19307347 19307653 -157666487 - AluSc SINE Alu -3 306 1 4395 173 48 29 chrX 19307653 19307831 -157666309 - L1 LINE L1 -3195 2951 2778 632 280 76 18 chrX 19307894 19308119 -157666021 - MIR SINE MIR -24 238 1 2190 78 14 14 chrX 19308142 19308438 -157665702 + AluY SINE Alu 1 296 -15 312 172 0 0 chrX 19308438 19308496 -157665644 + (TA)n Simple_repeat Simple_repeat 1 58 0 350 315 74 0 chrX 19308523 19308672 -157665468 - MIR SINE MIR -3 259 100 25 0 0 0 chrX 19308981 19309006 -157665134 + AT_rich Low_complexity Low_complexity 1 25 0 893 294 41 32 chrX 19309879 19310223 -157663917 - MLT1H LTR MaLR 0 549 203 362 270 10 20 chrX 19310397 19310497 -157663643 + MIR SINE MIR 156 254 -8 1467 153 6 102 chrX 19310782 19311128 -157663012 + AluJo SINE Alu 1 316 0 210 337 56 11 chrX 19312711 19312800 -157661340 - L2 LINE L2 -12 3260 3168 1913 212 63 52 chrX 19312957 19313513 -157660627 - MER68 LTR ERV1 0 562 1 1469 225 25 3 chrX 19314641 19314957 -157659183 - MLT1D LTR MaLR -2 503 181 1195 163 41 41 chrX 19314970 19315215 -157658925 - MLT1D LTR MaLR -260 245 1 780 230 75 58 chrX 19315304 19315582 -157658558 - L2 LINE L2 0 3313 3031 419 189 33 0 chrX 19315585 19315669 -157658471 + MLT1C LTR MaLR 1 87 -380 1495 192 120 0 chrX 19315669 19315977 -157658163 - MER2 DNA MER2_type 0 345 1 1333 186 98 55 chrX 19315982 19316348 -157657792 + MLT1C LTR MaLR 86 467 0 481 312 84 25 chrX 19316348 19316606 -157657534 - L2 LINE L2 -281 3032 2765 2618 114 39 0 chrX 19316847 19317259 -157656881 - MSTA LTR MaLR 0 428 1 247 130 0 0 chrX 19317934 19317980 -157656160 - LTR66 LTR ERVL -171 439 394 227 435 2 0 chrX 19318492 19318626 -157655514 + MIR SINE MIR 10 145 -63 225 316 0 53 chrX 19319853 19319929 -157654211 + MIR SINE MIR 24 95 -113 2048 139 0 3 chrX 19319937 19320231 -157653909 - AluSx SINE Alu -15 297 5 796 308 70 30 chrX 19320520 19321067 -157653073 - L2 LINE L2 -33 3280 2714 21 0 0 0 chrX 19324357 19324378 -157649762 + AT_rich Low_complexity Low_complexity 1 21 0 1034 170 178 35 chrX 19324381 19324640 -157649500 + AluJb SINE Alu 1 296 -6 21 0 0 0 chrX 19325606 19325627 -157648513 + AT_rich Low_complexity Low_complexity 1 21 0 514 328 39 35 chrX 19325724 19325956 -157648184 + MIR SINE MIR 29 261 -1 479 200 32 11 chrX 19325965 19326060 -157648080 + AluS SINE Alu 1 97 -216 216 0 0 0 chrX 19326064 19326088 -157648052 + (CA)n Simple_repeat Simple_repeat 1 24 0 987 221 67 30 chrX 19327517 19327815 -157646325 - MER46C DNA MER2_type -29 309 1 2246 217 60 10 chrX 19328772 19329288 -157644852 - MER34 LTR ERV1 0 542 1 371 214 0 79 chrX 19329912 19330001 -157644139 + MER96 DNA MER1_type? 94 175 0 274 317 140 21 chrX 19330065 19330393 -157643747 + L2 LINE L2 1909 2275 -1039 3694 55 4 2 chrX 19331533 19332005 -157642135 - L1PA7 LINE L1 -4 6150 5678 641 287 0 13 chrX 19332436 19332593 -157641547 + MER5B DNA MER1_type 24 178 0 910 99 0 14 chrX 19332734 19332875 -157641265 + L1PB1 LINE L1 6012 6150 -1 1220 121 204 57 chrX 19333085 19333350 -157640790 + AluJo SINE Alu 1 304 -8 21 36 0 0 chrX 19333809 19333837 -157640303 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 19334138 19334158 -157639982 + (A)n Simple_repeat Simple_repeat 1 20 0 636 202 90 85 chrX 19334878 19334953 -157639187 - MER5A DNA MER1_type 0 189 116 2387 97 0 0 chrX 19334953 19335253 -157638887 - AluSg SINE Alu -10 300 1 636 202 90 85 chrX 19335253 19335365 -157638775 - MER5A DNA MER1_type -73 116 1 447 271 8 0 chrX 19335399 19335517 -157638623 + MER103 DNA DNA 2 120 -46 2190 105 6 40 chrX 19336795 19337118 -157637022 - AluSx SINE Alu 0 312 1 535 324 82 11 chrX 19337392 19337673 -157636467 - L2 LINE L2 0 3313 3013 274 339 0 0 chrX 19338072 19338181 -157635959 - MIR SINE MIR -4 258 150 24 53 0 0 chrX 19338292 19338330 -157635810 + AT_rich Low_complexity Low_complexity 1 38 0 1357 204 87 32 chrX 19338458 19338802 -157635338 + MLT1A1 LTR MaLR 3 365 0 243 318 0 0 chrX 19339681 19339744 -157634396 + L2 LINE L2 3206 3268 -4 2016 211 44 32 chrX 19342038 19342536 -157631604 - MLT1D LTR MaLR -1 504 1 2259 97 3 0 chrX 19342891 19343189 -157630951 - AluSg SINE Alu -11 299 1 800 182 61 7 chrX 19343602 19343750 -157630390 + MLT1A1 LTR MaLR 11 166 -199 1529 227 40 20 chrX 19344535 19344883 -157629257 + MLT1A1 LTR MaLR 11 365 0 284 327 94 6 chrX 19346597 19346756 -157627384 + MER5A DNA MER1_type 17 189 0 234 256 212 15 chrX 19347085 19347222 -157626918 + MIR SINE MIR 79 242 -20 353 333 8 30 chrX 19349068 19349200 -157624940 + L2 LINE L2 3185 3313 0 1986 219 14 32 chrX 19350012 19350510 -157623630 + L1ME1 LINE L1 5584 6072 -94 351 0 0 0 chrX 19350521 19350527 -157623613 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chrX 19350527 19350566 -157623574 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chrX 19350665 19350704 -157623436 + AT_rich Low_complexity Low_complexity 1 39 0 1262 62 0 23 chrX 19352719 19352896 -157621244 - L1MA1 LINE L1 0 6302 6130 503 314 41 17 chrX 19353473 19353645 -157620495 + MIR SINE MIR 9 184 -78 1111 223 0 22 chrX 19353659 19353883 -157620257 - MER58A DNA MER1_type -5 219 1 1978 280 172 16 chrX 19355463 19356672 -157617468 + L2 LINE L2 1897 3296 -17 1884 139 0 27 chrX 19356701 19356995 -157617145 + AluJo SINE Alu 4 289 -23 2257 114 0 0 chrX 19359396 19359693 -157614447 - AluSx SINE Alu -15 297 1 286 319 15 15 chrX 19360775 19360910 -157613230 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 250 165 33 22 chrX 19361079 19361170 -157612970 + (TA)n Simple_repeat Simple_repeat 1 92 0 200 238 79 16 chrX 19362108 19362171 -157611969 - MER5A DNA MER1_type 0 189 123 493 295 21 47 chrX 19364274 19364467 -157609673 - MIR SINE MIR -8 254 67 2329 78 17 0 chrX 19365999 19366293 -157607847 - AluSx SINE Alu -13 299 1 2075 88 27 31 chrX 19366438 19366732 -157607408 + AluSx SINE Alu 1 293 -19 185 268 0 54 chrX 19366814 19366870 -157607270 - L2 LINE L2 0 3313 3261 * 314 317 188 0 chrX 19366869 19367055 -157607085 - L2 LINE L2 -901 2413 2193 236 157 20 20 chrX 19367560 19367611 -157606529 - MLT2F LTR ERVL 0 663 613 465 228 61 0 chrX 19367683 19367797 -157606343 - MLT2F LTR ERVL -64 599 479 921 296 61 13 chrX 19367886 19368197 -157605943 - MLT2F LTR ERVL -337 326 1 28 0 0 0 chrX 19369153 19369181 -157604959 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 19369980 19370002 -157604138 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chrX 19370290 19370310 -157603830 + (TG)n Simple_repeat Simple_repeat 2 21 0 2401 81 0 0 chrX 19370715 19371013 -157603127 - AluSx SINE Alu -14 298 1 1131 295 50 29 chrX 19372045 19372530 -157601610 - MLT1J LTR MaLR -16 495 1 195 114 0 0 chrX 19373805 19373840 -157600300 + (TAA)n Simple_repeat Simple_repeat 3 37 0 225 0 0 0 chrX 19374329 19374354 -157599786 + (TG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 19374353 19374375 -157599765 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 7112 49 19 10 chrX 19375525 19376816 -157597324 - L1PA8 LINE L1 -2 6170 4876 1053 205 82 72 chrX 19376932 19377260 -157596880 - LTR37A LTR ERV1 -8 418 84 2203 58 4 0 chrX 19377260 19377534 -157596606 + AluY SINE Alu 37 311 0 1053 205 82 72 chrX 19377534 19377619 -157596521 - LTR37A LTR ERV1 -342 84 1 223 253 63 42 chrX 19377896 19377991 -157596149 - MER5A DNA MER1_type -13 176 80 * 246 256 0 81 chrX 19377910 19377996 -157596144 + MER5A DNA MER1_type 43 121 -68 576 135 62 0 chrX 19379397 19379493 -157594647 + FLAM_A SINE Alu 18 119 -23 189 0 0 0 chrX 19379493 19379514 -157594626 + (TA)n Simple_repeat Simple_repeat 2 22 0 1586 141 0 155 chrX 19380210 19380571 -157593569 + AluJo SINE Alu 1 305 -7 1111 216 0 22 chrX 19380585 19380858 -157593282 + L1MB7 LINE L1 4323 4589 -1557 4242 99 65 3 chrX 19380858 19381513 -157592627 + L1PA15 LINE L1 5467 6164 -1 21 0 0 0 chrX 19381883 19381904 -157592236 + AT_rich Low_complexity Low_complexity 1 21 0 3360 150 120 26 chrX 19381925 19382606 -157591534 + L1MB7 LINE L1 5431 6175 -9 2712 195 80 8 chrX 19382680 19383291 -157590849 + MER63C DNA MER1_type 254 908 -22 184 320 22 82 chrX 19383471 19383702 -157590438 - L2 LINE L2 0 3313 3097 315 203 0 0 chrX 19384509 19384578 -157589562 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 23 33 0 0 chrX 19385660 19385690 -157588450 + AT_rich Low_complexity Low_complexity 1 30 0 228 35 0 0 chrX 19385806 19385835 -157588305 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 2055 106 3 14 chrX 19386131 19386414 -157587726 + AluSg SINE Alu 1 280 -30 21 71 0 0 chrX 19386824 19386866 -157587274 + AT_rich Low_complexity Low_complexity 1 42 0 5232 14 0 0 chrX 19386866 19387459 -157586681 - L1PA2 LINE L1 0 6155 5563 554 0 0 0 chrX 19387459 19387522 -157586618 + L1PA2 LINE L1 5487 5549 -606 742 233 0 6 chrX 19388212 19388375 -157585765 + L1MD3 LINE L1 7502 7663 -332 2058 151 0 0 chrX 19388958 19389262 -157584878 + AluSx SINE Alu 1 304 -8 243 0 0 0 chrX 19389262 19389289 -157584851 + (TA)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chrX 19389348 19389375 -157584765 + AT_rich Low_complexity Low_complexity 1 27 0 2205 56 8 0 chrX 19389378 19389644 -157584496 + AluSq SINE Alu 37 304 -9 591 301 68 16 chrX 19391362 19391611 -157582529 + MIR SINE MIR 1 262 0 2316 116 0 0 chrX 19391630 19391941 -157582199 + AluSx SINE Alu 1 311 -1 607 289 253 14 chrX 19392729 19393089 -157581051 - L3 LINE CR1 -15 1562 1117 1151 242 8 4 chrX 19395072 19395320 -157578820 + MIR SINE MIR 12 260 -2 231 270 95 14 chrX 19395533 19395607 -157578533 - L2 LINE L2 0 3272 3193 297 0 0 0 chrX 19396530 19396563 -157577577 + (T)n Simple_repeat Simple_repeat 1 33 0 1704 164 32 39 chrX 19396646 19396957 -157577183 - AluJo SINE Alu -3 309 1 854 86 0 0 chrX 19397130 19397235 -157576905 - AluSg/x SINE Alu -16 293 189 1175 167 28 9 chrX 19397746 19397961 -157576179 - MER20 DNA MER1_type 0 219 1 347 268 239 14 chrX 19398198 19398340 -157575800 - MER5A DNA MER1_type 0 189 16 309 183 0 0 chrX 19399006 19399066 -157575074 + GA-rich Low_complexity Low_complexity 2 61 0 314 167 0 33 chrX 19399673 19399733 -157574407 - L2 LINE L2 -2 3270 3213 217 297 67 19 chrX 19400388 19400493 -157573647 + MIR SINE MIR 34 144 -64 187 271 119 0 chrX 19402287 19402346 -157571794 + MIR SINE MIR 197 262 0 294 302 36 50 chrX 19402354 19402493 -157571647 + L2 LINE L2 3116 3252 -20 1930 55 35 0 chrX 19402652 19402909 -157571231 + L1PA7 LINE L1 5888 6153 -1 214 333 69 0 chrX 19403138 19403225 -157570915 - L2 LINE L2 -2 3311 3219 691 288 57 40 chrX 19403253 19403552 -157570588 - L2 LINE L2 -86 3227 2924 2555 215 119 69 chrX 19404096 19405092 -157569048 - L1MC4 LINE L1 0 8042 6997 26 0 0 0 chrX 19405509 19405535 -157568605 + AT_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chrX 19406090 19406131 -157568009 + (CA)n Simple_repeat Simple_repeat 2 42 0 2085 244 40 19 chrX 19408162 19408784 -157565356 - L1ME2 LINE L1 -6 6158 5524 2459 77 0 0 chrX 19409433 19409732 -157564408 - AluSx SINE Alu -11 301 3 2339 94 0 3 chrX 19412191 19412490 -157561650 - AluSq SINE Alu -13 300 3 534 288 58 29 chrX 19412880 19413085 -157561055 - MIR SINE MIR -33 229 19 211 271 0 0 chrX 19416202 19416250 -157557890 + (TG)n Simple_repeat Simple_repeat 1 48 0 186 294 212 12 chrX 19417456 19417541 -157556599 - MIR3 SINE MIR -105 103 2 208 309 0 0 chrX 19417609 19417664 -157556476 - L2 LINE L2 -12 3301 3247 195 42 0 0 chrX 19418534 19418558 -157555582 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chrX 19418919 19418948 -157555192 + AT_rich Low_complexity Low_complexity 1 29 0 392 271 66 8 chrX 19419157 19419279 -157554861 + L3b LINE CR1 1230 1358 -225 642 247 133 0 chrX 19420172 19420338 -157553802 + MER5A DNA MER1_type 1 188 -1 2568 52 0 7 chrX 19420370 19420677 -157553463 - AluY SINE Alu -6 305 1 21 0 0 0 chrX 19422233 19422254 -157551886 + AT_rich Low_complexity Low_complexity 1 21 0 2436 94 0 0 chrX 19423654 19423963 -157550177 + AluSx SINE Alu 2 310 -2 198 0 0 0 chrX 19426028 19426050 -157548090 + (A)n Simple_repeat Simple_repeat 1 22 0 273 75 0 0 chrX 19426353 19426393 -157547747 + (TA)n Simple_repeat Simple_repeat 1 40 0 324 125 0 0 chrX 19426393 19426457 -157547683 + (A)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chrX 19426965 19426986 -157547154 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chrX 19427402 19427429 -157546711 + (CA)n Simple_repeat Simple_repeat 1 27 0 309 51 0 0 chrX 19430599 19430638 -157543502 + (TG)n Simple_repeat Simple_repeat 2 40 0 401 118 118 0 chrX 19432921 19432989 -157541151 + AluS SINE Alu 1 76 -227 2393 93 0 10 chrX 19433056 19433367 -157540773 + AluSg SINE Alu 1 308 -2 386 287 70 32 chrX 19434617 19434774 -157539366 + MER5B DNA MER1_type 15 177 -1 350 255 155 37 chrX 19434786 19434947 -157539193 - MER5A DNA MER1_type -7 182 3 21 57 0 0 chrX 19435379 19435414 -157538726 + AT_rich Low_complexity Low_complexity 1 35 0 260 118 0 20 chrX 19437721 19437772 -157536368 + (TA)n Simple_repeat Simple_repeat 2 51 0 2388 71 0 0 chrX 19437894 19438189 -157535951 + AluY SINE Alu 5 299 -12 232 286 0 44 chrX 19440058 19440149 -157533991 + MIR SINE MIR 69 155 -107 418 332 48 78 chrX 19440206 19440619 -157533521 - L2 LINE L2 -29 3284 2884 2333 90 0 10 chrX 19440621 19440922 -157533218 + AluSg SINE Alu 1 298 -12 243 0 0 0 chrX 19440996 19441023 -157533117 + (TG)n Simple_repeat Simple_repeat 2 28 0 2380 75 0 7 chrX 19441159 19441464 -157532676 - AluY SINE Alu -8 303 1 525 258 138 79 chrX 19441829 19442337 -157531803 - MLT1H LTR MaLR -4 545 1 5450 95 20 1 chrX 19443866 19444668 -157529472 - L1MA3 LINE L1 0 7724 6908 2705 62 122 5 chrX 19444668 19445069 -157529071 + LTR7 LTR ERV1 1 448 -2 3040 103 9 21 chrX 19445071 19445536 -157528604 + HERVH LTR ERV1 1 459 -7254 14598 135 67 39 chrX 19445590 19448703 -157525437 + HERVH LTR ERV1 793 3993 -3720 4449 133 1 1 chrX 19448705 19449364 -157524776 + HERVH LTR ERV1 4488 5146 -2567 1332 151 18 0 chrX 19449364 19449583 -157524557 + HERVH LTR ERV1 5597 5819 -1894 * 2490 82 48 13 chrX 19449581 19449960 -157524180 + HERVH LTR ERV1 7322 7713 0 2614 86 98 5 chrX 19449962 19450370 -157523770 + LTR7 LTR ERV1 3 448 -2 1744 155 10 0 chrX 19450372 19450858 -157523282 - L1MA3 LINE L1 -743 6822 6421 * 40659 36 1 1 chrX 19450853 19457007 -157517133 - L1PA3 LINE L1 0 6155 1 12641 169 52 18 chrX 19457008 19458135 -157516005 - L1MA3 LINE L1 -1133 6432 5345 1964 125 0 7 chrX 19458135 19458416 -157515724 - AluSx SINE Alu -4 308 30 12641 169 52 18 chrX 19458416 19458433 -157515707 - L1MA3 LINE L1 -2220 5345 5330 2210 99 3 0 chrX 19458433 19458740 -157515400 - AluSq SINE Alu 0 308 1 12641 169 52 18 chrX 19458740 19461928 -157512212 - L1MA3 LINE L1 -2235 5330 16 314 263 149 0 chrX 19462007 19462121 -157512019 + MIR SINE MIR 59 189 -73 557 298 105 41 chrX 19463935 19464230 -157509910 - MLT1J2 LTR MaLR -16 434 121 1423 277 30 13 chrX 19464265 19464658 -157509482 - LTR16A LTR ERVL -35 415 16 2261 93 10 6 chrX 19464901 19465212 -157508928 - AluSx SINE Alu 0 312 1 25 31 0 0 chrX 19465307 19465339 -157508801 + AT_rich Low_complexity Low_complexity 1 32 0 21 82 0 0 chrX 19465420 19465469 -157508671 + AT_rich Low_complexity Low_complexity 1 49 0 1494 281 115 35 chrX 19466322 19466694 -157507446 - MLT1E LTR MaLR 0 593 161 303 49 0 0 chrX 19466694 19466735 -157507405 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1494 281 115 35 chrX 19466735 19466911 -157507229 - MLT1E LTR MaLR -432 161 1 1612 99 9 0 chrX 19467100 19467321 -157506819 + L1MA1 LINE L1 6080 6302 0 271 202 90 0 chrX 19468379 19468468 -157505672 - LTR37A LTR ERV1 -2 424 328 1563 222 25 18 chrX 19468482 19468879 -157505261 - LTR37B LTR ERV1 -63 405 6 1674 202 27 21 chrX 19468942 19469279 -157504861 - MER58B DNA MER1_type -1 340 2 28 79 0 0 chrX 19470596 19470659 -157503481 + AT_rich Low_complexity Low_complexity 1 63 0 269 325 118 61 chrX 19471490 19471702 -157502438 - MLT1H LTR MaLR -207 342 119 190 191 149 0 chrX 19471923 19471970 -157502170 - L2 LINE L2 -5 3308 3255 340 295 15 60 chrX 19472160 19472360 -157501780 + LTR16B LTR ERVL 274 464 0 503 308 27 11 chrX 19472904 19473089 -157501051 - MER117 DNA MER1_type -8 189 2 761 308 36 42 chrX 19474062 19474397 -157499743 + LTR16B LTR ERVL 131 463 -1 260 282 0 14 chrX 19476035 19476106 -157498034 - LTR33A LTR ERVL -6 517 448 243 270 45 54 chrX 19476298 19476409 -157497731 - MLT2E LTR ERVL -480 148 39 21 36 0 0 chrX 19476923 19476951 -157497189 + AT_rich Low_complexity Low_complexity 1 28 0 206 291 0 0 chrX 19477617 19477672 -157496468 + GA-rich Low_complexity Low_complexity 1 55 0 1385 133 59 30 chrX 19478267 19478538 -157495602 + THE1C LTR MaLR 94 372 -3 431 311 71 5 chrX 19478540 19478736 -157495404 - MIR SINE MIR -7 255 47 478 263 156 8 chrX 19478814 19479127 -157495013 + MLT1G1 LTR MaLR 1 304 -226 349 248 174 0 chrX 19479159 19479268 -157494872 + MLT1G1 LTR MaLR 279 406 -136 1653 274 171 4 chrX 19479573 19480081 -157494059 - MLT1E LTR MaLR 0 593 1 1128 286 48 23 chrX 19480150 19480446 -157493694 + L2 LINE L2 2911 3221 -92 2223 97 17 0 chrX 19480446 19480744 -157493396 + AluSc SINE Alu 1 303 -6 1128 286 48 23 chrX 19480744 19480839 -157493301 + L2 LINE L2 3221 3312 -1 4234 33 8 0 chrX 19481181 19481694 -157492446 + L1P LINE L1 3261 3777 -2369 240 150 46 31 chrX 19481794 19481859 -157492281 + L1MC4 LINE L1 2006 6983 -1339 255 250 0 62 chrX 19481860 19481956 -157492184 - L1MC4 LINE L1 -1339 6703 6614 * 265 311 0 0 chrX 19481932 19482022 -157492118 + L1MC4 LINE L1 6614 6703 -1339 226 286 0 24 chrX 19481994 19482078 -157492062 - L1MC4 LINE L1 -1339 6703 6622 * 1065 145 0 0 chrX 19482078 19482257 -157491883 + (TA)n Simple_repeat Simple_repeat 2 180 0 301 285 60 20 chrX 19482292 19482443 -157491697 - L1M4 LINE L1 -2952 3194 3038 642 149 0 75 chrX 19482486 19482647 -157491493 + MER5C DNA MER1_type 176 324 0 566 0 0 92 chrX 19483925 19484012 -157490128 + (T)n Simple_repeat Simple_repeat 1 79 0 243 0 0 0 chrX 19484162 19484189 -157489951 + (T)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chrX 19484335 19484368 -157489772 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chrX 19484394 19484430 -157489710 + AT_rich Low_complexity Low_complexity 1 36 0 333 82 0 0 chrX 19484649 19484698 -157489442 + (CA)n Simple_repeat Simple_repeat 2 50 0 2539 58 0 43 chrX 19484858 19485185 -157488955 + AluSp SINE Alu 1 313 0 369 0 0 0 chrX 19485202 19485243 -157488897 + (A)n Simple_repeat Simple_repeat 1 41 0 368 252 92 8 chrX 19486442 19486561 -157487579 + L1ME4a LINE L1 5992 6120 -1 1785 63 41 0 chrX 19487596 19487817 -157486323 - AluY SINE Alu -81 230 1 23 0 0 0 chrX 19487818 19487841 -157486299 + AT_rich Low_complexity Low_complexity 1 23 0 1229 188 9 125 chrX 19487841 19488177 -157485963 - AluJb SINE Alu -3 299 3 2311 91 7 0 chrX 19488181 19488479 -157485661 - AluSx SINE Alu -12 300 1 1811 139 42 0 chrX 19488479 19488766 -157485374 - AluJb SINE Alu -13 299 1 237 271 0 0 chrX 19488767 19488837 -157485303 + L1MB7 LINE L1 6115 6184 0 1690 133 70 11 chrX 19488895 19489166 -157484974 - AluJb SINE Alu -24 288 2 26 0 0 0 chrX 19489549 19489575 -157484565 + AT_rich Low_complexity Low_complexity 1 26 0 1977 150 0 0 chrX 19489575 19489861 -157484279 - AluSx SINE Alu -26 286 1 1625 156 20 20 chrX 19489864 19490159 -157483981 - AluJb SINE Alu -17 295 1 21 36 0 0 chrX 19492042 19492070 -157482070 + AT_rich Low_complexity Low_complexity 1 28 0 798 66 16 74 chrX 19493365 19493486 -157480654 - AluY SINE Alu -196 115 2 951 134 11 34 chrX 19493487 19493666 -157480474 + L1MB4 LINE L1 6004 6178 -2 1183 177 163 24 chrX 19493680 19493974 -157480166 + L1MB5 LINE L1 5833 6167 -7 253 141 202 0 chrX 19495259 19495358 -157478782 + AluYa5 SINE Alu 15 133 -168 36 64 0 0 chrX 19496495 19496542 -157477598 + AT_rich Low_complexity Low_complexity 1 47 0 2101 30 0 0 chrX 19696638 19696874 -157277266 - AluY SINE Alu -75 236 1 371 186 25 17 chrX 19696910 19697028 -157277112 + CT-rich Low_complexity Low_complexity 2 120 0 394 260 41 32 chrX 19697124 19697247 -157276893 + MLT1H LTR MaLR 177 300 -249 210 195 52 52 chrX 19697278 19697355 -157276785 - L3 LINE CR1 -26 1551 1475 640 328 70 16 chrX 19697459 19697828 -157276312 - L2 LINE L2 -972 2342 1954 2799 242 54 13 chrX 19698263 19699097 -157275043 - MER97a DNA MER1_type? -12 882 15 229 250 16 16 chrX 19699410 19699474 -157274666 + Charlie7 DNA MER1_type 1800 1863 -749 261 83 0 0 chrX 19700252 19700288 -157273852 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 486 0 0 0 chrX 19700288 19700342 -157273798 + (TG)n Simple_repeat Simple_repeat 2 55 0 429 225 121 75 chrX 19700365 19700605 -157273535 - MLT1L LTR MaLR -353 262 12 1038 170 0 0 chrX 19700811 19700982 -157273158 + AluSg/x SINE Alu 137 307 -5 600 257 127 46 chrX 19701034 19701318 -157272822 + Charlie7 DNA MER1_type 50 356 -2256 * 1445 258 69 42 chrX 19701314 19701996 -157272144 + Charlie7 DNA MER1_type 1471 2170 -442 2191 120 0 0 chrX 19702130 19702430 -157271710 - AluSx SINE Alu -12 300 1 237 83 0 0 chrX 19702962 19702998 -157271142 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 2140 106 3 0 chrX 19703134 19703455 -157270685 + AluSq SINE Alu 1 322 0 292 287 72 29 chrX 19703928 19704137 -157270003 - MER31-int LTR ERV1 -3021 1915 1698 327 194 0 0 chrX 19704325 19704397 -157269743 + L1PB1 LINE L1 129 200 -6663 13807 178 35 15 chrX 19704397 19707954 -157266186 + L1PB1 LINE L1 634 4472 -2395 2494 66 3 0 chrX 19707954 19708256 -157265884 + AluSp SINE Alu 1 303 -10 13807 178 35 15 chrX 19708256 19710702 -157263438 + L1PB1 LINE L1 4472 6867 0 1063 209 117 33 chrX 19711622 19712014 -157262126 - LTR37A LTR ERV1 -1 425 1 186 334 68 60 chrX 19712436 19712789 -157261351 - L2 LINE L2 -2424 890 535 322 316 38 29 chrX 19713479 19713688 -157260452 + MIR SINE MIR 38 248 -14 1266 173 31 0 chrX 19715109 19715335 -157258805 + MSTA LTR MaLR 1 233 -195 1224 140 11 0 chrX 19715446 19715632 -157258508 + MSTA LTR MaLR 232 419 -9 348 284 169 22 chrX 19715652 19715835 -157258305 - MIR SINE MIR -13 249 40 455 248 0 34 chrX 19715989 19716106 -157258034 + L2 LINE L2 3200 3312 -1 237 333 197 27 chrX 19716267 19716414 -157257726 - MER5A DNA MER1_type -2 187 16 515 280 15 8 chrX 19717089 19717221 -157256919 + L2 LINE L2 3181 3313 0 1645 132 47 38 chrX 19717741 19718082 -157256058 - L1MA8 LINE L1 -3 6288 5945 5498 181 43 8 chrX 19718359 19719508 -157254632 + L1MB1 LINE L1 4127 5373 -795 216 67 0 0 chrX 19719508 19719538 -157254602 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 5498 181 43 8 chrX 19719538 19720363 -157253777 + L1MB1 LINE L1 5373 6167 -1 1403 277 29 50 chrX 19720376 19720553 -157253587 - L2 LINE L2 -1201 2113 1934 1621 169 4 4 chrX 19720553 19720813 -157253327 + AluJb SINE Alu 1 260 -52 1403 277 29 50 chrX 19720813 19721181 -157252959 - L2 LINE L2 -1380 1934 1579 6367 14 0 0 chrX 19721591 19722322 -157251818 - L1P LINE L1 -1409 4737 4007 6145 13 0 0 chrX 19722322 19723057 -157251083 + L1PA2 LINE L1 5460 6198 0 204 40 0 0 chrX 19723105 19723130 -157251010 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 939 289 53 7 chrX 19723326 19723610 -157250530 + MER110 LTR ERV1 188 484 -7 496 333 18 6 chrX 19723963 19724131 -157250009 + MIR3 SINE MIR 20 189 -19 25 0 0 0 chrX 19724149 19724174 -157249966 + AT_rich Low_complexity Low_complexity 1 25 0 299 254 0 93 chrX 19724777 19724895 -157249245 + MLT1H LTR MaLR 430 536 -13 464 195 81 86 chrX 19726430 19726604 -157247536 + MLT1H LTR MaLR 377 549 0 25 31 0 0 chrX 19726763 19726795 -157247345 + AT_rich Low_complexity Low_complexity 1 32 0 664 336 50 0 chrX 19726956 19727176 -157246964 - MIR SINE MIR -24 238 8 851 194 12 6 chrX 19727349 19727509 -157246631 - MER5B DNA MER1_type -17 161 1 388 265 107 52 chrX 19729128 19729287 -157244853 - MER5A DNA MER1_type -18 160 7 2041 217 72 25 chrX 19729686 19730215 -157243925 + MLT2B3 LTR ERVL 1 554 0 3583 144 46 0 chrX 19730215 19730820 -157243320 + MSTA-int LTR MaLR 1 633 -1018 1328 113 5 5 chrX 19730821 19731025 -157243115 + MSTA-int LTR MaLR 1448 1651 0 1862 139 144 51 chrX 19731028 19731417 -157242723 + MSTA LTR MaLR 4 428 0 1987 171 37 0 chrX 19732119 19732471 -157241669 + MLT1A1 LTR MaLR 1 365 0 270 277 20 20 chrX 19732669 19732770 -157241370 + MER103 DNA DNA 65 165 -1 216 245 57 0 chrX 19733462 19733515 -157240625 + L2 LINE L2 3258 3313 0 2350 56 0 7 chrX 19734162 19734468 -157239672 - AluY SINE Alu 0 304 1 188 205 0 0 chrX 19736019 19736058 -157238082 + MIR SINE MIR 77 115 -147 352 305 7 40 chrX 19738104 19738255 -157235885 - L1MCa LINE L1 -4835 1591 1446 251 280 30 50 chrX 19738255 19738355 -157235785 - HAL1 LINE L1 -1121 1386 1289 659 206 0 23 chrX 19738953 19739084 -157235056 - FLAM_A SINE Alu -5 137 10 2428 50 30 0 chrX 19739169 19739466 -157234674 + AluY SINE Alu 1 306 -5 278 288 18 63 chrX 19739492 19739714 -157234426 - L1ME LINE L1 -335 5829 5618 296 284 135 12 chrX 19739756 19739978 -157234162 - L1ME LINE L1 -659 5505 5258 1359 182 65 59 chrX 19740327 19740651 -157233489 + MLT1D LTR MaLR 180 505 0 2197 99 0 0 chrX 19742279 19742563 -157231577 - AluSq SINE Alu -29 284 1 454 288 135 35 chrX 19742839 19743199 -157230941 + MLT1J2 LTR MaLR 71 445 -5 29 28 0 0 chrX 19743761 19743797 -157230343 + AT_rich Low_complexity Low_complexity 1 36 0 1438 172 11 36 chrX 19744073 19744435 -157229705 - MER61B LTR ERV1 0 425 1 1137 191 89 36 chrX 19744832 19745368 -157228772 - LTR29 LTR ERV1 -2 607 1 213 337 96 0 chrX 19745629 19745712 -157228428 + MIR SINE MIR 166 256 -6 3264 128 15 89 chrX 19745756 19746415 -157227725 + MER4B LTR ERV1 1 610 0 302 246 54 77 chrX 19746666 19746796 -157227344 - MIR SINE MIR -1 261 135 2207 192 75 37 chrX 19747138 19747700 -157226440 - MER92B LTR ERV1 -52 584 2 505 313 45 0 chrX 19747831 19748010 -157226130 - MIR SINE MIR -34 228 42 1916 135 18 0 chrX 19748536 19748817 -157225323 - AluJb SINE Alu -26 286 1 298 318 99 30 chrX 19749203 19749436 -157224704 - MIR SINE MIR -6 256 8 513 328 59 0 chrX 19749474 19749660 -157224480 + MIR SINE MIR 62 258 -4 21 0 0 0 chrX 19749936 19749957 -157224183 + AT_rich Low_complexity Low_complexity 1 21 0 1527 179 92 158 chrX 19750266 19751036 -157223104 - LTR8A LTR ERV1 -8 719 1 278 281 16 0 chrX 19752083 19752147 -157221993 - MER5A DNA MER1_type -1 188 124 389 70 18 0 chrX 19752812 19752869 -157221271 + (TG)n Simple_repeat Simple_repeat 2 59 0 652 132 0 62 chrX 19752870 19752999 -157221141 - FLAM_C SINE Alu -14 129 9 186 71 0 0 chrX 19753054 19753082 -157221058 + (TC)n Simple_repeat Simple_repeat 1 28 0 273 163 0 0 chrX 19753520 19753569 -157220571 + (TG)n Simple_repeat Simple_repeat 2 50 0 324 238 10 20 chrX 19753618 19753719 -157220421 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 24 0 0 0 chrX 19753731 19753755 -157220385 + AT_rich Low_complexity Low_complexity 1 24 0 2127 175 61 51 chrX 19755072 19755581 -157218559 + MER67D LTR ERV1 1 514 0 1015 191 30 30 chrX 19755898 19756134 -157218006 - MER106A DNA MER1_type 0 236 1 274 227 31 31 chrX 19756138 19756235 -157217905 - HAL1b LINE L1 -56 1292 1196 536 263 108 44 chrX 19756325 19756735 -157217405 - L1ME LINE L1 -342 5779 5358 33 80 0 0 chrX 19756990 19757065 -157217075 + AT_rich Low_complexity Low_complexity 1 75 0 3201 170 40 58 chrX 19757752 19758500 -157215640 - L1MB7 LINE L1 -23 6161 5427 21 0 0 0 chrX 19760026 19760047 -157214093 + AT_rich Low_complexity Low_complexity 1 21 0 4866 253 52 22 chrX 19760277 19761840 -157212300 - L1MB7 LINE L1 -1922 4224 2615 377 306 102 42 chrX 19762195 19762457 -157211683 - MLT1H LTR MaLR -123 286 50 180 0 0 0 chrX 19762794 19762814 -157211326 + (T)n Simple_repeat Simple_repeat 1 20 0 315 0 0 0 chrX 19762933 19762968 -157211172 + (TG)n Simple_repeat Simple_repeat 1 35 0 681 181 36 18 chrX 19764789 19764955 -157209185 - L1MC4a LINE L1 0 7808 7640 1494 171 0 0 chrX 19765027 19765291 -157208849 + L1 LINE L1 4666 4929 -1217 1046 121 0 12 chrX 19765291 19765452 -157208688 + L1PB1 LINE L1 5986 6148 -3 1593 205 0 19 chrX 19765516 19765833 -157208307 + AluJo SINE Alu 1 311 -1 267 93 0 0 chrX 19766164 19766207 -157207933 + (TC)n Simple_repeat Simple_repeat 1 43 0 355 236 72 85 chrX 19766563 19766710 -157207430 - MLT1H LTR MaLR 0 580 436 678 255 52 95 chrX 19766734 19767002 -157207138 - MLT1H LTR MaLR -235 314 61 2225 128 0 0 chrX 19767002 19767314 -157206826 + AluSx SINE Alu 1 312 0 678 255 52 95 chrX 19767314 19767371 -157206769 - MLT1H LTR MaLR -488 61 3 475 156 100 0 chrX 19767376 19767466 -157206674 + AluJ/FLAM SINE Alu 1 99 -213 23 0 0 0 chrX 19767652 19767675 -157206465 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 19769284 19769306 -157204834 + AT_rich Low_complexity Low_complexity 1 22 0 245 220 60 0 chrX 19769766 19769816 -157204324 - MER63 DNA MER1_type 0 1061 1009 21 36 0 0 chrX 19770006 19770034 -157204106 + AT_rich Low_complexity Low_complexity 1 28 0 189 383 133 20 chrX 19770803 19770999 -157203141 - L2 LINE L2 -189 3083 2866 1826 169 43 27 chrX 19771663 19772031 -157202109 - MLT1A2 LTR MaLR 0 374 1 400 245 49 68 chrX 19772031 19772194 -157201946 - MIR SINE MIR -59 203 44 399 89 0 0 chrX 19772668 19772724 -157201416 + (CA)n Simple_repeat Simple_repeat 1 56 0 24 0 0 0 chrX 19773145 19773169 -157200971 + AT_rich Low_complexity Low_complexity 1 24 0 1098 204 0 5 chrX 19773284 19773480 -157200660 - MER58A DNA MER1_type -19 205 11 25 51 0 0 chrX 19773609 19773648 -157200492 + AT_rich Low_complexity Low_complexity 1 39 0 2079 132 0 22 chrX 19774118 19774437 -157199703 - AluSx SINE Alu 0 312 1 252 184 0 0 chrX 19774565 19774614 -157199526 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 411 239 18 18 chrX 19775555 19775664 -157198476 + L2 LINE L2 3197 3305 -8 2175 69 4 4 chrX 19775859 19776134 -157198006 - AluSx SINE Alu -4 308 34 475 192 115 64 chrX 19776543 19776699 -157197441 - MER5B DNA MER1_type -7 171 8 335 266 62 8 chrX 19776705 19776833 -157197307 - Charlie2 DNA MER1_type -1 2861 2727 790 256 169 0 chrX 19777027 19777293 -157196847 - Charlie2 DNA MER1_type -2464 318 8 1093 88 0 0 chrX 19778020 19778168 -157195972 + L1PA10 LINE L1 6006 6153 -15 272 349 28 28 chrX 19779463 19779572 -157194568 - L2 LINE L2 0 3313 3205 1584 188 0 4 chrX 19779798 19780074 -157194066 + AluJo SINE Alu 6 280 -32 186 43 0 0 chrX 19780074 19780097 -157194043 + (TAAAA)n Simple_repeat Simple_repeat 5 27 0 4268 118 93 35 chrX 19780169 19780934 -157193206 - L1PA16 LINE L1 -1 6165 5357 557 136 0 11 chrX 19780935 19781023 -157193117 - AluS SINE Alu -225 87 1 855 138 147 41 chrX 19781030 19781248 -157192892 - L1PA16 LINE L1 -789 5357 5117 288 23 23 23 chrX 19781533 19781576 -157192564 + MADE1 DNA Mariner 38 80 0 867 150 0 0 chrX 19781663 19781796 -157192344 - FLAM_C SINE Alu 0 133 1 652 221 77 99 chrX 19781796 19782018 -157192122 - MER58A DNA MER1_type -6 218 2 2010 143 61 0 chrX 19782580 19782959 -157191181 - L1MA8 LINE L1 -3 6288 5887 2532 230 30 82 chrX 19783744 19784976 -157189164 + L1MB5 LINE L1 5008 6330 -4 823 291 138 19 chrX 19786610 19787026 -157187114 + MLT1F LTR MaLR 20 461 -81 317 197 76 0 chrX 19787266 19787332 -157186808 + MER91C DNA MER1_type 38 108 -32 3213 115 20 2 chrX 19787532 19788027 -157186113 + L1PA15 LINE L1 5652 6155 -10 1780 181 0 3 chrX 19788067 19788355 -157185785 + AluJo SINE Alu 3 289 -23 791 229 6 6 chrX 19788467 19788642 -157185498 - MER5B DNA MER1_type -3 175 1 607 263 26 13 chrX 19788666 19788818 -157185322 - MER5B DNA MER1_type -2 176 23 786 148 66 33 chrX 19788925 19789107 -157185033 + MER53 DNA DNA 2 189 0 848 228 22 0 chrX 19789832 19790016 -157184124 + MER5A DNA MER1_type 2 189 0 478 238 36 57 chrX 19790375 19790568 -157183572 - LTR28 LTR ERV1 -9 1011 823 284 349 78 8 chrX 19790569 19790698 -157183442 - MIR3 SINE MIR -36 172 35 2172 113 3 3 chrX 19790792 19791102 -157183038 - AluSq SINE Alu -3 310 1 28 61 0 0 chrX 19793536 19793585 -157180555 + AT_rich Low_complexity Low_complexity 1 49 0 1520 203 10 7 chrX 19793585 19793875 -157180265 - AluJo SINE Alu -21 291 1 580 174 17 0 chrX 19793876 19793991 -157180149 - L1MB7 LINE L1 -50 6134 6018 625 229 124 39 chrX 19793992 19794371 -157179769 - MER4C LTR ERV1 -5 460 257 472 171 72 18 chrX 19794516 19794627 -157179513 - MER4A LTR ERV1 -547 117 1 1706 157 35 3 chrX 19794627 19794939 -157179201 - L1MB7 LINE L1 -159 6025 5704 910 317 52 29 chrX 19794939 19795422 -157178718 + L2 LINE L2 1767 2260 -1054 632 259 125 14 chrX 19795577 19795793 -157178347 + MIR SINE MIR 13 252 -10 1962 199 80 16 chrX 19795913 19796351 -157177789 - MLT1C LTR MaLR 0 467 2 196 361 60 0 chrX 19796577 19796660 -157177480 + L2 LINE L2 2987 3074 -198 336 276 276 0 chrX 19797258 19797392 -157176748 + MIR SINE MIR 33 203 -59 2306 149 70 12 chrX 19797405 19797807 -157176333 - MSTB LTR MaLR 0 426 2 269 279 89 0 chrX 19797956 19798035 -157176105 + L2 LINE L2 3224 3309 -4 189 273 114 34 chrX 19799067 19799155 -157174985 + L3b LINE CR1 1487 1581 -2 241 315 141 0 chrX 19799617 19799709 -157174431 + L2 LINE L2 3154 3258 -14 365 256 0 0 chrX 19799721 19799807 -157174333 - MIR SINE MIR 0 262 177 2172 13 0 0 chrX 19799812 19800050 -157174090 - AluYb8 SINE Alu -8 310 73 217 356 40 20 chrX 19800104 19800253 -157173887 + MIR SINE MIR 109 260 -2 830 234 57 55 chrX 19800501 19800749 -157173391 - MIR SINE MIR -3 259 13 301 246 186 0 chrX 19800892 19801010 -157173130 + L1M4 LINE L1 5350 5489 -695 1347 289 80 42 chrX 19801060 19802038 -157172102 + L2 LINE L2 2284 3280 -33 1959 128 3 20 chrX 19802070 19802374 -157171766 + AluJb SINE Alu 1 299 -13 3485 89 14 12 chrX 19802470 19802977 -157171163 - L1PB2 LINE L1 -2 6149 5642 327 146 0 0 chrX 19803210 19803265 -157170875 + (TA)n Simple_repeat Simple_repeat 1 55 0 363 59 0 0 chrX 19804771 19804822 -157169318 - MADE1 DNA Mariner -1 79 29 603 261 53 83 chrX 19805182 19805446 -157168694 + MIR SINE MIR 2 257 -5 232 236 87 31 chrX 19805487 19805614 -157168526 - L1MC/D LINE L1 -1903 5905 5772 369 233 0 0 chrX 19805683 19805769 -157168371 - L1MC5 LINE L1 -54 7907 7822 1819 160 0 13 chrX 19806635 19806935 -157167205 - AluJb SINE Alu -16 296 1 683 261 148 70 chrX 19806960 19807076 -157167064 - L2 LINE L2 -12 3301 3195 945 215 96 40 chrX 19807076 19807430 -157166710 - MLT1A2 LTR MaLR 0 374 1 683 261 148 70 chrX 19807430 19807685 -157166455 - L2 LINE L2 -118 3195 2901 476 299 97 19 chrX 19807683 19807890 -157166250 - L2 LINE L2 -86 3227 3005 * 383 317 8 8 chrX 19808298 19808418 -157165722 - MIR SINE MIR 0 262 143 207 234 62 16 chrX 19808839 19808903 -157165237 + MER5A DNA MER1_type 121 187 -2 534 206 191 0 chrX 19808913 19809044 -157165096 + MER5A DNA MER1_type 33 188 -1 289 273 70 70 chrX 19809089 19809217 -157164923 + MER5B DNA MER1_type 1 128 -50 225 0 0 0 chrX 19809555 19809580 -157164560 + (A)n Simple_repeat Simple_repeat 1 25 0 669 272 40 6 chrX 19809814 19809987 -157164153 - MER5A DNA MER1_type -2 187 9 239 326 31 20 chrX 19810731 19810829 -157163311 - MER91A DNA MER1_type -81 115 17 2328 93 0 0 chrX 19811100 19811401 -157162739 + AluSc SINE Alu 1 301 -8 711 141 89 0 chrX 19811410 19811545 -157162595 + L1MA9 LINE L1 6047 6193 -119 405 136 25 12 chrX 19811664 19811745 -157162395 + L1MA9 LINE L1 6169 6250 -62 1041 261 20 33 chrX 19811901 19812204 -157161936 - MER101B LTR ERV1 -271 299 1 312 200 67 0 chrX 19812204 19812279 -157161861 + L1MA9 LINE L1 6229 6308 -4 368 333 143 22 chrX 19812847 19813120 -157161020 + L2 LINE L2 3008 3313 0 35 0 0 0 chrX 19813132 19813167 -157160973 + AT_rich Low_complexity Low_complexity 1 35 0 1928 132 10 3 chrX 19813196 19813492 -157160648 + AluSx SINE Alu 4 301 -11 226 213 21 0 chrX 19813774 19813821 -157160319 + (TG)n Simple_repeat Simple_repeat 2 49 0 2007 200 35 71 chrX 19815249 19815768 -157158372 - MLT1D LTR MaLR -5 500 1 2647 134 29 27 chrX 19816619 19816848 -157157292 - L1PA16 LINE L1 -9 6157 5925 2089 108 0 27 chrX 19816848 19817143 -157156997 - AluSg SINE Alu -23 287 1 2647 134 29 27 chrX 19817143 19817360 -157156780 - L1PA16 LINE L1 -241 5925 5710 341 94 0 31 chrX 19818787 19818851 -157155289 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 2131 192 43 31 chrX 19819206 19819628 -157154512 + MSTA LTR MaLR 1 427 -1 225 242 5 89 chrX 19821319 19821509 -157152631 + T-rich Low_complexity Low_complexity 5 178 0 12000 161 24 39 chrX 19822754 19822907 -157151233 - L1MA4 LINE L1 -6 6476 6322 2313 98 0 16 chrX 19822907 19823223 -157150917 - AluSx SINE Alu -1 311 1 12000 161 24 39 chrX 19823223 19826259 -157147881 - L1MA4 LINE L1 -160 6322 3344 207 0 0 0 chrX 19826259 19826282 -157147858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12000 161 24 39 chrX 19826282 19826580 -157147560 - L1MA4 LINE L1 -3138 3344 3043 1689 192 3 6 chrX 19826581 19826893 -157147247 - AluJb SINE Alu -1 311 1 944 120 0 40 chrX 19826900 19827050 -157147090 - AluSg/x SINE Alu -15 297 154 5283 210 32 13 chrX 19827060 19829384 -157144756 - L1MA4 LINE L1 -3282 3046 680 258 136 0 0 chrX 19829384 19829428 -157144712 + (TCC)n Simple_repeat Simple_repeat 3 46 0 3965 181 11 16 chrX 19829448 19830143 -157143997 - L1MA4 LINE L1 -4635 693 2 34 0 0 0 chrX 19830147 19830181 -157143959 + AT_rich Low_complexity Low_complexity 1 34 0 575 162 52 17 chrX 19830197 19830370 -157143770 + CT-rich Low_complexity Low_complexity 2 180 0 707 241 86 0 chrX 19830374 19830548 -157143592 - AluJo SINE Alu -39 273 85 283 325 148 48 chrX 19831913 19831992 -157142148 - MIR SINE MIR -10 252 182 1443 214 25 42 chrX 19831992 19832394 -157141746 - MLT2C1 LTR ERVL -2 395 1 283 325 148 48 chrX 19832394 19832523 -157141617 - MIR SINE MIR -80 182 23 261 163 0 0 chrX 19832596 19832645 -157141495 + (CA)n Simple_repeat Simple_repeat 1 49 0 277 329 47 0 chrX 19833986 19834071 -157140069 - L3 LINE CR1 -115 1462 1374 184 326 132 28 chrX 19834080 19834224 -157139916 + L2 LINE L2 3154 3312 -1 358 380 51 11 chrX 19834496 19834770 -157139370 - L3 LINE CR1 -691 886 602 21 0 0 0 chrX 19835030 19835051 -157139089 + AT_rich Low_complexity Low_complexity 1 21 0 325 287 39 12 chrX 19836266 19836476 -157137664 - L1ME LINE L1 -242 5879 5663 2142 108 0 3 chrX 19837396 19837691 -157136449 - AluSx SINE Alu -17 295 2 2766 143 39 41 chrX 19838098 19838638 -157135502 - L1MD1 LINE L1 0 6242 5704 1618 166 7 31 chrX 19838638 19838928 -157135212 - AluJb SINE Alu -29 283 1 984 268 62 25 chrX 19839405 19840092 -157134048 - L1ME3A LINE L1 -186 5984 5107 239 196 22 33 chrX 19840210 19840302 -157133838 + (TA)n Simple_repeat Simple_repeat 2 92 0 450 290 59 16 chrX 19841004 19841190 -157132950 - L2 LINE L2 0 3313 3120 551 245 155 7 chrX 19841203 19841358 -157132782 - MER5A DNA MER1_type -3 186 9 2076 273 80 44 chrX 19841404 19842227 -157131913 - L2 LINE L2 -225 3088 2236 235 262 174 34 chrX 19842230 19842379 -157131761 - MIR SINE MIR -70 192 23 566 292 77 5 chrX 19842733 19842942 -157131198 + LTR16C LTR ERVL 237 460 -31 200 265 102 0 chrX 19843000 19843049 -157131091 + L2 LINE L2 3246 3299 -14 180 77 0 0 chrX 19843652 19843678 -157130462 + (TTA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 19844149 19844172 -157129968 + AT_rich Low_complexity Low_complexity 1 23 0 1581 198 0 22 chrX 19845090 19845403 -157128737 - AluJb SINE Alu -6 306 1 244 45 0 45 chrX 19845833 19845877 -157128263 + (TC)n Simple_repeat Simple_repeat 1 42 0 722 254 88 45 chrX 19847962 19848292 -157125848 + MARNA DNA Mariner 41 384 -202 2239 266 74 34 chrX 19849335 19850269 -157123871 + L1MC4 LINE L1 4134 4613 -1533 2168 94 40 3 chrX 19850269 19850567 -157123573 - AluSc SINE Alu 0 309 1 2239 266 74 34 chrX 19850567 19851381 -157122759 + L1MC4 LINE L1 4613 5393 -753 529 240 32 0 chrX 19851415 19851540 -157122600 - MLT1E3 LTR MaLR 0 624 496 814 240 106 17 chrX 19851568 19851851 -157122289 - MLT1E1 LTR MaLR -365 289 1 2101 201 19 111 chrX 19851851 19852254 -157121886 + L1MC4 LINE L1 7375 7681 -361 2217 86 7 26 chrX 19852254 19852558 -157121582 + AluSx SINE Alu 1 298 -14 2101 201 19 111 chrX 19852558 19852890 -157121250 + L1MC4 LINE L1 7681 8042 0 180 231 46 62 chrX 19852918 19852983 -157121157 + MIR SINE MIR 197 260 -2 23 0 0 0 chrX 19853115 19853138 -157121002 + AT_rich Low_complexity Low_complexity 1 23 0 1390 211 38 41 chrX 19853196 19853538 -157120602 - LTR16C LTR ERVL 0 491 151 414 336 108 9 chrX 19853764 19853978 -157120162 + MIR SINE MIR 28 262 0 1795 200 34 48 chrX 19854530 19855004 -157119136 - MLT1C LTR MaLR 0 467 1 3241 200 33 8 chrX 19856031 19856755 -157117385 - L1MB8 LINE L1 0 6178 5437 1197 224 137 31 chrX 19856788 19857146 -157116994 + MSTD LTR MaLR 1 396 0 1829 173 0 6 chrX 19857495 19857629 -157116511 + AluJb SINE Alu 1 134 -178 2482 37 3 3 chrX 19857629 19857927 -157116213 + AluY SINE Alu 1 298 -13 1829 173 0 6 chrX 19857927 19858105 -157116035 + AluJb SINE Alu 134 311 -1 222 333 0 0 chrX 19858105 19858180 -157115960 - MIR SINE MIR -66 196 122 227 315 0 56 chrX 19858527 19858616 -157115524 + LTR16A1 LTR ERVL 365 448 -9 302 340 108 42 chrX 19858694 19858935 -157115205 + L3b LINE CR1 1310 1566 -17 21 0 0 0 chrX 19859703 19859724 -157114416 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 19859892 19859914 -157114226 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chrX 19859925 19859965 -157114175 + AT_rich Low_complexity Low_complexity 1 40 0 445 304 7 7 chrX 19860121 19860256 -157113884 + HAL1 LINE L1 1615 1749 -758 661 231 78 112 chrX 19860453 19860864 -157113276 + HAL1b LINE L1 582 978 -370 33 43 0 0 chrX 19861087 19861134 -157113006 + AT_rich Low_complexity Low_complexity 1 47 0 2265 97 7 3 chrX 19861271 19861580 -157112560 - AluSx SINE Alu -2 310 1 7796 193 26 10 chrX 19861885 19862428 -157111712 + L1PA16 LINE L1 3529 4061 -2105 2645 114 46 7 chrX 19862428 19862840 -157111300 + MSTA LTR MaLR 1 428 0 7796 193 26 10 chrX 19862840 19864884 -157109256 + L1PA16 LINE L1 4061 6161 -5 21 0 0 0 chrX 19864888 19864909 -157109231 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chrX 19866058 19866092 -157108048 + (TC)n Simple_repeat Simple_repeat 1 34 0 313 363 45 32 chrX 19866105 19866262 -157107878 + L2 LINE L2 3114 3272 0 244 218 0 18 chrX 19866558 19866613 -157107527 + MIR SINE MIR 98 151 -111 466 313 54 20 chrX 19867398 19867627 -157106513 + MIR SINE MIR 2 237 -25 375 89 0 0 chrX 19867666 19867722 -157106418 + (TG)n Simple_repeat Simple_repeat 1 56 0 1927 176 15 53 chrX 19867722 19868120 -157106020 + MLT1B LTR MaLR 5 387 -3 576 0 0 0 chrX 19868121 19868185 -157105955 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 1441 243 60 21 chrX 19868299 19868781 -157105359 - L1ME3 LINE L1 -15 6147 5647 1147 134 37 28 chrX 19868892 19869109 -157105031 + MER20 DNA MER1_type 1 219 0 206 146 0 24 chrX 19869397 19869438 -157104702 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 31 0 0 0 chrX 19870122 19870153 -157103987 + AT_rich Low_complexity Low_complexity 1 31 0 2704 184 53 9 chrX 19872033 19872560 -157101580 + MER44D DNA MER2_type 1 605 0 2113 30 56 11 chrX 19873121 19873421 -157100719 - AluY SINE Alu 0 312 1 228 378 18 9 chrX 19873627 19873738 -157100402 - L2 LINE L2 -663 2651 2540 2364 167 51 6 chrX 19873752 19874224 -157099916 - L1MB3 LINE L1 -3 6180 5688 23 0 0 0 chrX 19874389 19874412 -157099728 + AT_rich Low_complexity Low_complexity 1 23 0 519 190 8 0 chrX 19874505 19874627 -157099513 - L1MA9 LINE L1 -8 6304 6177 2467 169 47 78 chrX 19874639 19875302 -157098838 + LTR48B LTR ERV1 3 644 0 517 154 0 19 chrX 19875437 19875541 -157098599 - L1MB3 LINE L1 -2 6181 6080 4517 211 49 23 chrX 19875739 19877053 -157097087 - L1MCb LINE L1 -4848 1197 3 21 0 0 0 chrX 19877261 19877282 -157096858 + AT_rich Low_complexity Low_complexity 1 21 0 2133 129 7 0 chrX 19879309 19879611 -157094529 + AluSq SINE Alu 1 304 -9 352 317 130 31 chrX 19879779 19879940 -157094200 - MER5B DNA MER1_type -1 177 1 5725 162 25 19 chrX 19880307 19882109 -157092031 - L1MA9 LINE L1 0 6312 4492 2026 182 25 19 chrX 19882102 19882535 -157091605 - L1MA9 LINE L1 -2324 3822 3387 * 3177 253 67 10 chrX 19882524 19884811 -157089329 - L1M4c LINE L1 -4081 2131 1 698 120 0 51 chrX 19884949 19884977 -157089163 - FLAM_C SINE Alu -170 142 114 1195 7 0 14 chrX 19884977 19885123 -157089017 + (TCTA)n Simple_repeat Simple_repeat 1 144 0 698 120 0 51 chrX 19885123 19885211 -157088929 - FLAM_C SINE Alu -198 114 32 261 186 0 0 chrX 19885932 19885975 -157088165 - MLT1I LTR MaLR -4 405 363 914 56 0 0 chrX 19886070 19886178 -157087962 - AluSg SINE Alu -202 108 1 390 21 0 0 chrX 19886184 19886231 -157087909 + (TG)n Simple_repeat Simple_repeat 2 48 0 546 270 26 13 chrX 19886327 19886479 -157087661 - L2 LINE L2 -2 3311 3158 182 37 37 0 chrX 19887955 19887982 -157086158 + (CA)n Simple_repeat Simple_repeat 1 28 0 2392 97 0 0 chrX 19888699 19889007 -157085133 - AluSg SINE Alu -2 308 1 715 289 105 23 chrX 19889081 19889568 -157084572 - L1MC/D LINE L1 -1989 5819 5293 1038 189 11 0 chrX 19890214 19890405 -157083735 - MLT1D LTR MaLR -312 193 1 218 227 40 27 chrX 19890631 19890706 -157083434 + MIR SINE MIR 180 255 -7 4319 163 10 20 chrX 19891144 19891445 -157082695 - MER44D DNA MER2_type -1891 596 434 1810 174 3 16 chrX 19891445 19891761 -157082379 - AluJb SINE Alu 0 312 1 4319 163 10 20 chrX 19891761 19892190 -157081950 - MER44D DNA MER2_type -2053 434 2 244 373 97 22 chrX 19892537 19892722 -157081418 - L2 LINE L2 -698 2616 2418 4217 116 8 9 chrX 19893029 19893659 -157080481 - MER39B LTR ERV1 -23 630 2 318 322 102 19 chrX 19893659 19893864 -157080276 - L3 LINE CR1 -139 1438 1217 220 259 129 12 chrX 19894121 19894206 -157079934 - L3 LINE CR1 -341 1236 1142 297 0 0 0 chrX 19894263 19894296 -157079844 + (TA)n Simple_repeat Simple_repeat 1 33 0 3139 163 19 36 chrX 19894443 19895058 -157079082 + MER6A DNA MER2_type 1 605 0 316 336 45 0 chrX 19895424 19895558 -157078582 + MIR SINE MIR 100 239 -23 554 268 47 94 chrX 19896032 19896565 -157077575 - L1MEd LINE L1 -5124 995 488 22 0 0 0 chrX 19897903 19897925 -157076215 + AT_rich Low_complexity Low_complexity 1 22 0 382 268 52 46 chrX 19897939 19898092 -157076048 - MIR SINE MIR -9 253 100 336 278 27 30 chrX 19898154 19898304 -157075836 - MIR SINE MIR -67 141 34 1338 191 8 129 chrX 19898467 19898824 -157075316 - MER47B DNA MER2_type -104 314 1 3168 125 52 24 chrX 19898835 19899372 -157074768 - MER34C LTR ERV1 0 585 34 200 237 0 17 chrX 19900176 19900235 -157073905 + (TTTA)n Simple_repeat Simple_repeat 2 59 0 231 218 0 0 chrX 19900541 19900596 -157073544 + (TA)n Simple_repeat Simple_repeat 2 56 0 240 86 0 0 chrX 19900634 19900669 -157073471 + (CA)n Simple_repeat Simple_repeat 2 36 0 314 311 96 25 chrX 19900696 19901006 -157073134 - L1M3 LINE L1 -383 5797 5466 2027 181 21 7 chrX 19901757 19902394 -157071746 - MER39 LTR ERV1 0 707 4 228 86 0 0 chrX 19902435 19902470 -157071670 + (TCTCTG)n Simple_repeat Simple_repeat 4 38 0 1013 133 17 0 chrX 19902624 19902805 -157071335 - L1MA7 LINE L1 -2 6289 6106 2187 101 0 14 chrX 19902808 19903105 -157071035 + AluSx SINE Alu 1 293 -19 616 316 126 5 chrX 19904184 19904399 -157069741 - MIR SINE MIR -6 256 16 307 260 0 14 chrX 19904809 19904882 -157069258 + L2 LINE L2 3238 3309 -4 279 0 0 0 chrX 19905614 19905645 -157068495 + (CA)n Simple_repeat Simple_repeat 2 32 0 399 242 48 48 chrX 19906304 19906428 -157067712 + L2 LINE L2 3190 3313 0 785 268 66 5 chrX 19906980 19907178 -157066962 - MIR SINE MIR -47 215 6 685 155 81 6 chrX 19907263 19907424 -157066716 - L1MB2 LINE L1 -3 6168 5996 2414 119 70 5 chrX 19907607 19908009 -157066131 - MSTA LTR MaLR 0 428 1 1859 143 22 74 chrX 19908279 19908350 -157065790 - MER2 DNA MER2_type 0 344 271 2248 115 0 13 chrX 19908350 19908662 -157065478 + AluSx SINE Alu 3 310 -2 1859 143 22 74 chrX 19908662 19908953 -157065187 - MER2 DNA MER2_type -73 271 1 1925 131 44 7 chrX 19909485 19909783 -157064357 + AluJb SINE Alu 1 309 -3 2208 103 0 29 chrX 19909828 19910140 -157064000 + AluSx SINE Alu 1 303 -9 2619 48 3 0 chrX 19910628 19910938 -157063202 - AluY SINE Alu 0 311 1 2101 108 7 0 chrX 19911616 19911949 -157062191 - AluSx SINE Alu 0 336 2 278 160 20 20 chrX 19911977 19912077 -157062063 + (TA)n Simple_repeat Simple_repeat 1 100 0 1425 173 24 0 chrX 19912080 19912335 -157061805 - MER2 DNA MER2_type 0 345 85 980 196 0 0 chrX 19912441 19912625 -157061515 - AluJ SINE Alu 0 312 129 826 165 0 0 chrX 19912667 19912800 -157061340 - AluJ SINE Alu -169 133 1 240 35 0 0 chrX 19912802 19912831 -157061309 + (TG)n Simple_repeat Simple_repeat 2 30 0 240 35 0 0 chrX 19913008 19913037 -157061103 + (CTG)n Simple_repeat Simple_repeat 2 30 0 564 136 45 98 chrX 19913669 19913801 -157060339 - THE1C LTR MaLR -250 125 1 21 36 0 0 chrX 19914091 19914119 -157060021 + AT_rich Low_complexity Low_complexity 1 28 0 289 216 54 0 chrX 19914816 19914890 -157059250 + L1MC/D LINE L1 5354 5431 -2377 1748 82 4 0 chrX 19914941 19915197 -157058943 - L1MA5 LINE L1 -2 6298 6042 2339 105 0 0 chrX 19915198 19915503 -157058637 - AluSx SINE Alu -7 305 1 7914 170 21 39 chrX 19915530 19917948 -157056192 - L1PA16 LINE L1 -23 7581 5223 628 186 23 0 chrX 19917948 19918077 -157056063 - AluJ SINE Alu -169 133 2 7914 170 21 39 chrX 19918077 19918355 -157055785 - L1PA16 LINE L1 -2381 5223 4942 243 0 0 0 chrX 19918358 19918385 -157055755 + (T)n Simple_repeat Simple_repeat 1 27 0 374 141 56 0 chrX 19918406 19918477 -157055663 - AluJ/FRAM SINE Alu -2 300 226 212 236 118 36 chrX 19918551 19918661 -157055479 + L2 LINE L2 3194 3312 -1 2247 102 0 13 chrX 19919231 19919536 -157054604 - AluSq SINE Alu -11 302 2 6409 242 13 21 chrX 19919795 19920445 -157053695 - L1PA16 LINE L1 -2659 4925 4271 1583 177 17 23 chrX 19920445 19920744 -157053396 - AluJb SINE Alu -15 297 1 6409 242 13 21 chrX 19920744 19922838 -157051302 - L1PA16 LINE L1 -3313 4271 2182 354 338 11 0 chrX 19923071 19923256 -157050884 - L1PA16 LINE L1 -5276 2298 2084 1174 362 10 24 chrX 19923344 19923929 -157050211 - L1PA16 LINE L1 -6210 1364 788 1092 161 29 33 chrX 19923929 19924171 -157049969 - L1MA5 LINE L1 -241 6059 5819 2388 93 3 0 chrX 19924288 19924598 -157049542 - AluSp SINE Alu -2 311 1 207 319 62 66 chrX 19924961 19925218 -157048922 - L2 LINE L2 -1313 2001 1746 804 165 0 0 chrX 19925444 19925601 -157048539 + FLAM_C SINE Alu 1 157 0 1625 203 7 3 chrX 19925604 19925905 -157048235 + AluJb SINE Alu 1 302 -10 312 27 0 0 chrX 19925905 19925942 -157048198 + (TA)n Simple_repeat Simple_repeat 1 37 0 297 51 0 0 chrX 19926745 19926784 -157047356 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 249 266 119 37 chrX 19927296 19927405 -157046735 - MIR SINE MIR -73 189 72 534 285 140 5 chrX 19928184 19928384 -157045756 - LTR33A LTR ERVL 0 523 297 204 281 7 65 chrX 19928466 19928619 -157045521 - L2 LINE L2 -64 3249 3106 432 140 56 9 chrX 19928626 19928733 -157045407 + MER96B DNA MER1_type? 253 364 -53 296 301 115 0 chrX 19928876 19928989 -157045151 - L2 LINE L2 -1015 2299 2174 351 175 25 0 chrX 19929016 19929096 -157045044 - L1MB7 LINE L1 0 6184 6103 * 3428 152 43 22 chrX 19929094 19929248 -157044892 - L1MB4 LINE L1 0 6180 6031 2351 77 7 0 chrX 19929248 19929548 -157044592 + AluSp SINE Alu 5 306 -7 3428 152 43 22 chrX 19929548 19930069 -157044071 - L1MB4 LINE L1 -149 6031 5491 2215 103 0 10 chrX 19930097 19930399 -157043741 - AluSg1 SINE Alu -10 299 1 386 221 131 25 chrX 19930491 19930613 -157043527 + L2 LINE L2 3179 3313 0 1929 154 3 0 chrX 19930615 19930914 -157043226 - AluJb SINE Alu -12 300 1 2113 137 0 0 chrX 19931782 19932088 -157042052 + AluSx SINE Alu 1 306 -6 198 0 0 0 chrX 19932178 19932200 -157041940 + (A)n Simple_repeat Simple_repeat 1 22 0 257 181 28 69 chrX 19932235 19932307 -157041833 - L2 LINE L2 0 3313 3245 23 0 0 0 chrX 19932427 19932450 -157041690 + AT_rich Low_complexity Low_complexity 1 23 0 2784 161 58 18 chrX 19932453 19933020 -157041120 + L1MB5 LINE L1 5585 6174 0 2429 77 0 0 chrX 19933146 19933446 -157040694 + AluY SINE Alu 1 300 -11 2317 104 0 0 chrX 19934963 19935261 -157038879 + AluSq SINE Alu 1 298 -15 366 357 17 8 chrX 19935889 19936045 -157038095 + MIR3 SINE MIR 21 178 -54 352 291 18 112 chrX 19937076 19937202 -157036938 - MIR SINE MIR -44 218 120 2329 48 14 0 chrX 19937202 19937492 -157036648 - AluY SINE Alu -17 294 1 352 291 18 112 chrX 19937492 19937588 -157036552 - MIR SINE MIR -142 120 17 207 69 0 0 chrX 19937778 19937807 -157036333 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 258 364 128 46 chrX 19938028 19938443 -157035697 + L2 LINE L2 2305 2753 -561 329 384 113 24 chrX 19938494 19938786 -157035354 + L2 LINE L2 2869 3186 -86 211 312 91 0 chrX 19939248 19939325 -157034815 - MIR SINE MIR -139 123 40 190 386 0 0 chrX 19939400 19939470 -157034670 + L2 LINE L2 3186 3255 -17 2244 96 0 3 chrX 19943610 19943912 -157030228 + AluSg SINE Alu 1 301 -9 379 304 49 54 chrX 19944220 19944404 -157029736 + MIR SINE MIR 14 196 -66 1718 101 0 0 chrX 19945967 19946195 -157027945 - AluSq SINE Alu -15 298 71 228 308 43 51 chrX 19946297 19946414 -157027726 + L2 LINE L2 2920 3035 -237 9110 188 48 8 chrX 19946556 19947416 -157026724 - L1MC3 LINE L1 -1 7784 6959 210 71 0 0 chrX 19947416 19947444 -157026696 + (TG)n Simple_repeat Simple_repeat 2 29 0 9110 188 48 8 chrX 19947444 19948435 -157025705 - L1MC3 LINE L1 -826 6959 5860 3250 200 161 34 chrX 19948434 19948973 -157025167 - L1MCa LINE L1 -4087 2339 1870 * 2309 104 0 0 chrX 19948973 19949281 -157024859 - AluSg SINE Alu 0 310 3 3250 200 161 34 chrX 19949281 19949429 -157024711 - L1MCa LINE L1 -4556 1870 1742 2652 42 0 0 chrX 19949429 19949735 -157024405 - AluYa5 SINE Alu -3 308 3 3250 200 161 34 chrX 19949735 19950179 -157023961 - L1MCa LINE L1 -4684 1742 1043 2489 61 0 0 chrX 19950179 19950472 -157023668 + AluY SINE Alu 1 293 -18 3250 200 161 34 chrX 19950472 19950539 -157023601 - L1MCa LINE L1 -5383 1043 986 362 350 103 27 chrX 19950551 19950598 -157023542 - L3 LINE CR1 -542 1035 993 379 89 0 208 chrX 19950598 19950699 -157023441 + MADE1 DNA Mariner 1 80 0 362 350 103 27 chrX 19950699 19950951 -157023189 - L3 LINE CR1 -584 993 713 341 260 85 30 chrX 19951419 19951660 -157022480 - L1ME3A LINE L1 -223 5947 5686 226 260 58 39 chrX 19951682 19951786 -157022354 - L1ME3A LINE L1 -481 5689 5584 467 275 10 3 chrX 19952798 19952943 -157021197 - MIR SINE MIR -59 149 16 22 0 0 0 chrX 19953816 19953838 -157020302 + AT_rich Low_complexity Low_complexity 1 22 0 236 265 0 0 chrX 19953839 19953888 -157020252 - MIR SINE MIR -3 259 211 2537 62 3 0 chrX 19953889 19954193 -157019947 - AluSp SINE Alu -8 305 1 2269 102 0 3 chrX 19954253 19954547 -157019593 + AluSc SINE Alu 2 294 -15 238 233 0 27 chrX 19954711 19954784 -157019356 + L1MEd LINE L1 59 129 -5990 336 146 37 98 chrX 19955059 19955141 -157018999 - MER74C LTR ERVL -380 80 4 592 217 0 0 chrX 19955151 19955257 -157018883 + FLAM_C SINE Alu 3 108 -35 2194 123 7 0 chrX 19956060 19956360 -157017780 + AluSx SINE Alu 1 302 -10 1219 168 48 81 chrX 19956399 19956733 -157017407 + MER33 DNA MER1_type 1 323 -1 2499 94 37 3 chrX 19957034 19957386 -157016754 + THE1B LTR MaLR 1 364 0 22 0 0 54 chrX 19957407 19957427 -157016713 + AT_rich Low_complexity Low_complexity 1 20 -15 2767 16 0 0 chrX 19957427 19957744 -157016396 - L1PA4 LINE L1 -2 6153 5837 22 0 0 54 chrX 19957744 19957760 -157016380 + AT_rich Low_complexity Low_complexity 20 35 0 219 218 0 0 chrX 19957951 19958006 -157016134 + (TA)n Simple_repeat Simple_repeat 1 55 0 1403 151 15 15 chrX 19958178 19958449 -157015691 + L1MB4 LINE L1 5910 6180 0 1436 153 0 9 chrX 19958509 19958731 -157015409 + AluJb SINE Alu 2 221 -91 233 258 15 0 chrX 19959393 19959459 -157014681 + (TA)n Simple_repeat Simple_repeat 2 68 0 2366 89 0 3 chrX 19959486 19959790 -157014350 - AluSg SINE Alu -7 303 1 1890 109 47 18 chrX 19960334 19960631 -157013509 + AluSx SINE Alu 1 305 0 22 35 0 0 chrX 19960763 19960792 -157013348 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 19960972 19961001 -157013139 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chrX 19962162 19962198 -157011942 + (TA)n Simple_repeat Simple_repeat 2 37 0 2361 74 0 10 chrX 19962198 19962497 -157011643 - AluSg SINE Alu -14 296 1 23 0 0 0 chrX 19962497 19962520 -157011620 + AT_rich Low_complexity Low_complexity 1 23 0 195 214 89 0 chrX 19963172 19963228 -157010912 + MER5C DNA MER1_type 263 323 -1 449 111 0 0 chrX 19963396 19963459 -157010681 - AluSp/q SINE Alu -17 296 234 209 0 98 0 chrX 20163461 20163502 -156810638 + (TA)n Simple_repeat Simple_repeat 2 46 0 2881 16 0 0 chrX 20163561 20163879 -156810261 + AluYb8 SINE Alu 1 318 0 2028 160 51 11 chrX 20165290 20165665 -156808475 - MLT1B LTR MaLR 0 390 1 255 31 0 0 chrX 20166081 20166113 -156808027 + (GA)n Simple_repeat Simple_repeat 1 32 0 271 294 43 11 chrX 20166178 20166270 -156807870 - MIR3 SINE MIR 0 208 114 257 231 26 26 chrX 20166475 20166553 -156807587 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 25 31 0 0 chrX 20167703 20167735 -156806405 + AT_rich Low_complexity Low_complexity 1 32 0 569 113 105 23 chrX 20168346 20168479 -156805661 - MER103 DNA DNA -22 144 1 218 344 71 52 chrX 20168569 20168877 -156805263 - L2 LINE L2 -874 2440 2127 467 241 57 43 chrX 20168895 20169036 -156805104 - MIR SINE MIR -70 192 50 23 54 0 0 chrX 20169071 20169108 -156805032 + AT_rich Low_complexity Low_complexity 1 37 0 2533 71 0 0 chrX 20169326 20169636 -156804504 + AluSg SINE Alu 1 310 0 21 0 0 0 chrX 20169730 20169751 -156804389 + AT_rich Low_complexity Low_complexity 1 21 0 23 101 0 0 chrX 20171190 20171269 -156802871 + AT_rich Low_complexity Low_complexity 1 79 0 1681 171 0 30 chrX 20171774 20172073 -156802067 + AluJo SINE Alu 1 290 -22 24 0 0 0 chrX 20172094 20172118 -156802022 + AT_rich Low_complexity Low_complexity 1 24 0 480 242 24 8 chrX 20172664 20172788 -156801352 - MIR SINE MIR -18 244 119 590 328 86 66 chrX 20173314 20173781 -156800359 - MLT1K LTR MaLR -32 556 81 255 125 0 0 chrX 20173884 20173924 -156800216 + (TG)n Simple_repeat Simple_repeat 1 40 0 2215 98 20 0 chrX 20174212 20174509 -156799631 + AluSp SINE Alu 1 303 -10 2577 49 0 3 chrX 20174628 20174936 -156799204 - AluY SINE Alu -4 307 1 576 287 67 12 chrX 20175843 20176097 -156798043 - MLT1J LTR MaLR 0 511 244 844 161 13 0 chrX 20176505 20176654 -156797486 + L1MB1 LINE L1 6017 6167 -1 2196 94 0 3 chrX 20176662 20176977 -156797163 + AluSx SINE Alu 1 314 0 825 293 91 28 chrX 20177025 20177387 -156796753 + LTR16A1 LTR ERVL 3 387 -70 2203 114 0 3 chrX 20177387 20177694 -156796446 - AluSq SINE Alu -7 306 1 225 0 0 0 chrX 20177763 20177788 -156796352 + (CA)n Simple_repeat Simple_repeat 1 25 0 476 270 25 70 chrX 20178300 20178500 -156795640 + MIR SINE MIR 58 248 -14 359 298 84 8 chrX 20178590 20178721 -156795419 - MIR SINE MIR -102 160 20 186 43 0 0 chrX 20180290 20180313 -156793827 + (T)n Simple_repeat Simple_repeat 1 23 0 293 264 42 0 chrX 20182172 20182244 -156791896 + L2 LINE L2 3194 3268 -4 1092 226 4 8 chrX 20183247 20183513 -156790627 + L1M4 LINE L1 4725 4989 -1157 1248 211 50 0 chrX 20183572 20183871 -156790269 + MER33 DNA MER1_type 1 314 -10 27 0 0 0 chrX 20183970 20183997 -156790143 + AT_rich Low_complexity Low_complexity 1 27 0 206 206 0 0 chrX 20184147 20184181 -156789959 - L2 LINE L2 -87 3226 3193 785 175 0 19 chrX 20184502 20184656 -156789484 + L1PB3 LINE L1 6003 6153 -1 213 94 0 0 chrX 20186215 20186247 -156787893 + (CA)n Simple_repeat Simple_repeat 2 33 0 715 329 21 4 chrX 20186374 20186608 -156787532 - MIR SINE MIR -22 240 3 230 266 13 0 chrX 20186835 20186914 -156787226 + L1MC4 LINE L1 7963 8042 0 281 302 73 0 chrX 20187275 20187371 -156786769 + L2 LINE L2 3209 3311 -2 207 100 0 0 chrX 20187567 20187597 -156786543 + (TA)n Simple_repeat Simple_repeat 2 31 0 365 255 113 14 chrX 20189441 20189582 -156784558 + MER117 DNA MER1_type 9 163 -34 28 0 0 0 chrX 20190059 20190087 -156784053 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 20190292 20190320 -156783820 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chrX 20190688 20190712 -156783428 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 365 206 15 130 chrX 20190712 20190807 -156783333 + L1MC4 LINE L1 6616 6694 -1348 2112 105 3 0 chrX 20190807 20191093 -156783047 - AluSx SINE Alu -25 287 1 365 206 15 130 chrX 20191093 20191128 -156783012 + L1MC4 LINE L1 6694 6731 -1311 221 397 34 11 chrX 20192116 20192295 -156781845 - MIR SINE MIR -66 196 14 396 338 65 0 chrX 20192770 20192924 -156781216 + MIR SINE MIR 49 212 -50 553 271 17 40 chrX 20192955 20193132 -156781008 + MIR SINE MIR 63 235 -27 249 280 84 19 chrX 20193175 20193282 -156780858 + MIR SINE MIR 89 202 -60 404 281 92 38 chrX 20193811 20193996 -156780144 + MER91A DNA MER1_type 2 196 0 2189 150 23 0 chrX 20194052 20194406 -156779734 - MER47A DNA MER2_type -2 364 3 4536 62 0 0 chrX 20194490 20195059 -156779081 + L1PA7 LINE L1 5583 6151 -3 2112 108 3 7 chrX 20196379 20196674 -156777466 - AluSq SINE Alu -19 294 1 1771 212 54 62 chrX 20196823 20197289 -156776851 + MLT1C LTR MaLR 6 467 0 215 200 0 22 chrX 20197481 20197526 -156776614 + L3 LINE CR1 436 479 -1098 1234 193 133 11 chrX 20198406 20198670 -156775470 - AluJo SINE Alu -5 297 2 2272 116 0 0 chrX 20198732 20199034 -156775106 + AluSx SINE Alu 1 302 -10 2058 108 0 0 chrX 20199965 20200233 -156773907 - AluSq SINE Alu -45 268 1 24 67 0 0 chrX 20200691 20200736 -156773404 + AT_rich Low_complexity Low_complexity 1 45 0 2254 102 3 3 chrX 20200906 20201219 -156772921 - AluSp SINE Alu 0 313 1 1939 130 0 14 chrX 20201874 20202158 -156771982 + AluSx SINE Alu 1 280 -32 276 30 0 0 chrX 20202158 20202191 -156771949 + (TAA)n Simple_repeat Simple_repeat 1 33 0 229 50 0 50 chrX 20202599 20202639 -156771501 - L1MA10 LINE L1 -1 6333 6296 405 274 59 10 chrX 20202642 20202744 -156771396 - MIR SINE MIR -115 147 41 296 300 150 61 chrX 20203495 20203753 -156770387 - L2 LINE L2 -149 3164 2870 2272 93 3 3 chrX 20203753 20204055 -156770085 + AluSx SINE Alu 1 302 -10 296 300 150 61 chrX 20204055 20204123 -156770017 - L2 LINE L2 -443 2870 2809 2231 236 31 34 chrX 20204393 20204827 -156769313 - MLT1H1 LTR MaLR 0 555 122 3013 142 13 55 chrX 20204827 20205376 -156768764 + MER1A DNA MER1_type 1 526 -1 2231 236 31 34 chrX 20205376 20205496 -156768644 - MLT1H1 LTR MaLR -433 122 3 21 82 0 0 chrX 20206476 20206525 -156767615 + AT_rich Low_complexity Low_complexity 1 49 0 2156 101 3 3 chrX 20207226 20207522 -156766618 + AluSg SINE Alu 1 296 -14 507 297 71 29 chrX 20207701 20207938 -156766202 + MIR SINE MIR 20 262 0 31 26 0 0 chrX 20207958 20207996 -156766144 + AT_rich Low_complexity Low_complexity 1 38 0 1138 141 45 56 chrX 20207999 20208154 -156765986 + L1MB7 LINE L1 5919 6071 -113 2252 107 0 28 chrX 20208154 20208472 -156765668 + AluSc SINE Alu 1 309 0 1138 141 45 56 chrX 20208472 20208585 -156765555 + L1MB7 LINE L1 6071 6184 0 26 50 0 0 chrX 20208690 20208730 -156765410 + AT_rich Low_complexity Low_complexity 1 40 0 207 241 19 37 chrX 20208755 20208809 -156765331 - MIR SINE MIR -63 145 93 422 309 130 45 chrX 20208841 20209110 -156765030 - L2 LINE L2 -94 3219 2928 2441 117 5 17 chrX 20209761 20210172 -156763968 - L1MA4 LINE L1 -1 6299 5894 291 333 89 30 chrX 20210842 20211010 -156763130 + MIR SINE MIR 6 183 -79 22 0 0 0 chrX 20211160 20211182 -156762958 + AT_rich Low_complexity Low_complexity 1 22 0 2228 113 3 0 chrX 20211964 20212266 -156761874 + AluSq SINE Alu 2 304 -9 587 249 70 35 chrX 20213119 20213320 -156760820 + MIR SINE MIR 1 208 -54 487 292 45 7 chrX 20213717 20213871 -156760269 - MIR3 SINE MIR -5 203 44 252 0 0 0 chrX 20214451 20214479 -156759661 + (T)n Simple_repeat Simple_repeat 1 28 0 2299 157 16 0 chrX 20214490 20214866 -156759274 - MSTA LTR MaLR 0 428 47 615 152 0 2 chrX 20214863 20215001 -156759139 + AluSq SINE Alu 131 300 -13 * 377 136 0 17 chrX 20215001 20215060 -156759080 - MSTA LTR MaLR -368 58 1 1334 184 62 0 chrX 20215061 20215317 -156758823 - AluJo SINE Alu -36 276 5 202 244 134 47 chrX 20215980 20216107 -156758033 + MIR SINE MIR 67 204 -58 636 215 19 148 chrX 20216145 20216401 -156757739 + MIR SINE MIR 15 237 -25 215 226 19 19 chrX 20216634 20216687 -156757453 - L2 LINE L2 0 3313 3261 29 94 0 0 chrX 20217311 20217396 -156756744 + AT_rich Low_complexity Low_complexity 1 85 0 1877 194 14 19 chrX 20217496 20217863 -156756277 - MLT1A1 LTR MaLR 0 365 1 1360 150 154 19 chrX 20218049 20218315 -156755825 - AluJo SINE Alu 0 302 1 304 294 84 8 chrX 20218318 20218437 -156755703 - L1ME4a LINE L1 -5 6116 5989 747 296 28 24 chrX 20218464 20218714 -156755426 - MIR SINE MIR 0 262 12 384 237 68 26 chrX 20218741 20218931 -156755209 - L1ME4a LINE L1 -215 5906 5709 263 302 47 57 chrX 20219065 20219171 -156754969 - L2 LINE L2 -35 3237 3133 1089 167 5 9 chrX 20219604 20219819 -156754321 - L1MA7 LINE L1 -1 6290 6077 572 299 85 31 chrX 20221407 20221631 -156752509 - MIR SINE MIR 0 262 27 225 333 0 14 chrX 20221661 20221730 -156752410 - MIR SINE MIR -119 143 76 322 266 162 26 chrX 20222776 20222930 -156751210 - MER5B DNA MER1_type -1 177 3 542 227 187 40 chrX 20222945 20223095 -156751045 - MER5B DNA MER1_type -4 174 3 192 40 0 0 chrX 20223138 20223163 -156750977 + (CAG)n Simple_repeat Simple_repeat 1 25 0 338 263 203 0 chrX 20223164 20223282 -156750858 + MER5A DNA MER1_type 47 188 -1 320 248 119 34 chrX 20223288 20223489 -156750651 + MIR SINE MIR 35 251 -11 2284 50 14 0 chrX 20223497 20223774 -156750366 + AluSp SINE Alu 1 281 -32 228 35 0 0 chrX 20223774 20223803 -156750337 + (TA)n Simple_repeat Simple_repeat 2 30 0 229 222 0 0 chrX 20224938 20224983 -156749157 - L2 LINE L2 -7 3306 3262 279 0 0 0 chrX 20224991 20225022 -156749118 + (A)n Simple_repeat Simple_repeat 1 31 0 228 253 0 0 chrX 20226673 20226748 -156747392 + (TA)n Simple_repeat Simple_repeat 2 76 0 28 0 0 0 chrX 20227391 20227419 -156746721 + AT_rich Low_complexity Low_complexity 1 28 0 840 169 0 30 chrX 20227808 20227974 -156746166 - MER5A DNA MER1_type 0 189 29 30 27 0 0 chrX 20228131 20228168 -156745972 + AT_rich Low_complexity Low_complexity 1 37 0 994 87 0 0 chrX 20228292 20228418 -156745722 - AluSg/x SINE Alu -13 297 172 25 65 0 0 chrX 20228973 20229019 -156745121 + AT_rich Low_complexity Low_complexity 1 46 0 2445 78 3 0 chrX 20229298 20229605 -156744535 - AluSp SINE Alu -5 308 1 214 337 105 0 chrX 20229685 20229771 -156744369 + L2 LINE L2 3219 3313 0 2326 93 0 3 chrX 20229841 20230152 -156743988 - AluSg SINE Alu 0 310 1 2100 124 3 7 chrX 20230158 20230465 -156743675 - AluSx SINE Alu -6 306 1 2214 116 0 3 chrX 20230632 20230943 -156743197 + AluSx SINE Alu 3 312 0 1768 184 15 3 chrX 20231056 20231387 -156742753 - MER7A DNA MER2_type 0 346 14 27 62 0 0 chrX 20231969 20232017 -156742123 + AT_rich Low_complexity Low_complexity 1 48 0 2028 133 3 0 chrX 20232082 20232404 -156741736 - AluSx SINE Alu 0 312 1 2199 112 0 7 chrX 20232815 20233119 -156741021 + AluSx SINE Alu 1 302 -10 242 222 19 0 chrX 20233351 20233405 -156740735 + MIR3 SINE MIR 120 174 -34 2540 62 7 0 chrX 20233442 20233749 -156740391 - AluSx SINE Alu -3 309 1 832 292 55 39 chrX 20233861 20234224 -156739916 + LTR16C LTR ERVL 123 491 0 355 297 275 22 chrX 20234510 20234830 -156739310 + L2 LINE L2 2575 2975 -339 192 394 0 0 chrX 20234837 20234931 -156739209 + L2 LINE L2 3220 3313 0 230 172 17 35 chrX 20235079 20235137 -156739003 + (TA)n Simple_repeat Simple_repeat 1 57 0 2742 7 0 0 chrX 20235938 20236235 -156737905 + AluY SINE Alu 1 297 -14 235 302 177 24 chrX 20236625 20236792 -156737348 + MIR SINE MIR 31 220 -42 2018 144 35 11 chrX 20236826 20237193 -156736947 - L1MA9 LINE L1 -5 6307 5932 24 0 0 0 chrX 20237261 20237285 -156736855 + AT_rich Low_complexity Low_complexity 1 24 0 1661 162 11 0 chrX 20237854 20238119 -156736021 - AluJb SINE Alu -44 268 1 2022 125 3 0 chrX 20238129 20238432 -156735708 - AluSx SINE Alu -4 308 5 2364 47 20 14 chrX 20238539 20238836 -156735304 + AluY SINE Alu 1 299 -12 21 57 0 0 chrX 20239618 20239653 -156734487 + AT_rich Low_complexity Low_complexity 1 35 0 2306 87 3 10 chrX 20239935 20240235 -156733905 + AluSq SINE Alu 1 298 -15 2378 76 0 10 chrX 20240991 20241293 -156732847 + AluSq SINE Alu 1 299 -14 1064 161 11 0 chrX 20241367 20241541 -156732599 - AluSg/x SINE Alu 0 310 135 1825 130 42 13 chrX 20241969 20242286 -156731854 - MER44D DNA MER2_type -3 606 1 24 32 0 0 chrX 20242306 20242337 -156731803 + AT_rich Low_complexity Low_complexity 1 31 0 2061 112 0 30 chrX 20242437 20242741 -156731399 + AluSq SINE Alu 1 295 -18 50 18 0 0 chrX 20243386 20243443 -156730697 + AT_rich Low_complexity Low_complexity 1 57 0 1190 182 139 73 chrX 20243639 20244078 -156730062 + Charlie4a DNA MER1_type 39 506 -2 188 375 31 25 chrX 20244189 20244349 -156729791 - L2 LINE L2 -236 3036 2876 186 71 0 0 chrX 20244354 20244382 -156729758 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chrX 20245379 20245407 -156728733 + AT_rich Low_complexity Low_complexity 1 28 0 2113 98 37 3 chrX 20245458 20245754 -156728386 - AluSq SINE Alu -7 306 1 1889 119 7 27 chrX 20245782 20246076 -156728064 + AluSx SINE Alu 1 288 -24 183 80 0 0 chrX 20246581 20246606 -156727534 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2208 88 0 3 chrX 20247035 20247319 -156726821 - AluSq SINE Alu -30 283 1 5182 163 33 1 chrX 20247910 20248264 -156725876 - L1PB3 LINE L1 0 6154 5813 293 0 27 0 chrX 20248264 20248301 -156725839 + (TG)n Simple_repeat Simple_repeat 2 39 0 5182 163 33 1 chrX 20248301 20249268 -156724872 - L1PB3 LINE L1 -341 5813 4793 2639 75 119 5 chrX 20249640 20250042 -156724098 - LTR7 LTR ERV1 -2 448 1 3380 57 9 7 chrX 20250631 20251073 -156723067 - LTR7 LTR ERV1 -7 443 1 286 310 50 66 chrX 20251240 20251482 -156722658 + MLT1L LTR MaLR 1 238 -377 183 42 0 0 chrX 20252016 20252040 -156722100 + (A)n Simple_repeat Simple_repeat 1 24 0 352 324 58 79 chrX 20252586 20252685 -156721455 - MIR SINE MIR -6 256 156 2301 92 0 16 chrX 20252685 20253002 -156721138 - AluSx SINE Alu 0 312 1 352 324 58 79 chrX 20253002 20253143 -156720997 - MIR SINE MIR -106 156 21 2090 130 3 0 chrX 20253630 20253938 -156720202 - AluSp SINE Alu -4 309 1 21 57 0 0 chrX 20253971 20254006 -156720134 + AT_rich Low_complexity Low_complexity 1 35 0 616 263 58 58 chrX 20254820 20255128 -156719012 - LTR33 LTR ERVL -2 519 212 4502 57 3 20 chrX 20255133 20255717 -156718423 + LTR10C LTR ERV1 11 584 -7 560 188 30 0 chrX 20256331 20256432 -156717708 + MER3 DNA MER1_type 10 113 -96 2292 94 3 13 chrX 20256433 20256740 -156717400 + AluSx SINE Alu 1 304 -8 2206 118 3 3 chrX 20257542 20257846 -156716294 + AluSq SINE Alu 1 304 -9 2600 52 0 0 chrX 20258074 20258383 -156715757 + AluY SINE Alu 1 309 -2 2287 103 0 3 chrX 20259512 20259823 -156714317 - AluSx SINE Alu -2 310 1 287 301 98 16 chrX 20260008 20260131 -156714009 + L2 LINE L2 3139 3271 -1 29 60 0 0 chrX 20260462 20260512 -156713628 + AT_rich Low_complexity Low_complexity 1 50 0 190 319 34 92 chrX 20260895 20261014 -156713126 - L2 LINE L2 -39 3233 3122 2217 102 0 3 chrX 20261173 20261499 -156712641 + AluSx SINE Alu 1 312 0 183 367 33 17 chrX 20261597 20261717 -156712423 - L2 LINE L2 -563 2751 2630 251 287 50 20 chrX 20263393 20263494 -156710646 + MIR SINE MIR 88 191 -71 313 233 11 0 chrX 20263932 20264022 -156710118 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 668 184 0 0 chrX 20264811 20264925 -156709215 - FLAM_A SINE Alu -18 124 11 2389 75 0 3 chrX 20264990 20265283 -156708857 + AluSc SINE Alu 7 298 -11 27 62 0 0 chrX 20265582 20265630 -156708510 + AT_rich Low_complexity Low_complexity 1 48 0 1092 46 0 0 chrX 20265648 20265778 -156708362 - AluY SINE Alu -15 296 167 1717 149 54 14 chrX 20266003 20266298 -156707842 + AluSx SINE Alu 1 307 -5 494 290 122 29 chrX 20266550 20266788 -156707352 - MIR SINE MIR -1 261 2 238 184 26 0 chrX 20267524 20267600 -156706540 + (TA)n Simple_repeat Simple_repeat 1 78 0 4222 71 5 13 chrX 20269426 20270071 -156704069 + LTR8 LTR ERV1 1 691 0 45319 75 23 11 chrX 20270071 20271284 -156702856 + HUERS-P1 LTR ERV1 1 1199 -5064 222 37 0 0 chrX 20271284 20271311 -156702829 + (TC)n Simple_repeat Simple_repeat 2 28 0 45319 75 23 11 chrX 20271311 20272759 -156701381 + HUERS-P1 LTR ERV1 1199 2629 -3634 2178 98 0 46 chrX 20272759 20273086 -156701054 + AluSx SINE Alu 1 312 0 45319 75 23 11 chrX 20273086 20273331 -156700809 + HUERS-P1 LTR ERV1 2629 2870 -3393 312 48 0 0 chrX 20273331 20273373 -156700767 + (TG)n Simple_repeat Simple_repeat 1 42 0 45319 75 23 11 chrX 20273373 20275036 -156699104 + HUERS-P1 LTR ERV1 2870 4513 -1750 2074 66 77 7 chrX 20275036 20275309 -156698831 + AluSp SINE Alu 1 292 -21 45319 75 23 11 chrX 20275309 20276928 -156697212 + HUERS-P1 LTR ERV1 4513 6263 0 5104 73 24 0 chrX 20276928 20277603 -156696537 + LTR8 LTR ERV1 1 691 0 283 320 20 10 chrX 20277761 20277861 -156696279 - MER81 DNA DNA -13 101 1 4276 122 6 51 chrX 20277946 20278654 -156695486 - LTR8 LTR ERV1 -15 676 1 2066 147 100 35 chrX 20278737 20278835 -156695305 - MSTC LTR MaLR -1 427 337 3690 159 26 31 chrX 20278835 20279566 -156694574 - LTR8A LTR ERV1 0 727 1 2066 147 100 35 chrX 20279566 20279868 -156694272 - MSTC LTR MaLR -91 337 1 3010 113 2 0 chrX 20279937 20280370 -156693770 - MER57B LTR ERV1 0 434 1 2152 89 0 4 chrX 20280472 20280795 -156693345 - AluSq SINE Alu 0 326 5 405 326 74 19 chrX 20280853 20281068 -156693072 + MIR SINE MIR 36 262 0 1394 142 0 0 chrX 20281899 20282110 -156692030 - AluSq SINE Alu 0 313 103 726 277 114 7 chrX 20282340 20282611 -156691529 + LTR16C LTR ERVL 192 491 0 21 36 0 0 chrX 20282642 20282670 -156691470 + AT_rich Low_complexity Low_complexity 1 28 0 252 278 119 57 chrX 20282888 20283064 -156691076 + MER117 DNA MER1_type 5 191 -6 14037 128 20 6 chrX 20284206 20286385 -156687755 + Tigger1 DNA MER2_type 210 2418 0 218 264 0 0 chrX 20287067 20287120 -156687020 + (ATG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chrX 20287458 20287481 -156686659 + AT_rich Low_complexity Low_complexity 1 23 0 1789 204 9 0 chrX 20287496 20287834 -156686306 - MLT1A1 LTR MaLR -24 341 1 1531 138 51 47 chrX 20287983 20288279 -156685861 + AluSx SINE Alu 1 297 -15 23 86 0 0 chrX 20288308 20288366 -156685774 + AT_rich Low_complexity Low_complexity 1 58 0 305 197 40 0 chrX 20288532 20288608 -156685532 + MER116 DNA Mariner 2 80 0 22 56 0 0 chrX 20289380 20289416 -156684724 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chrX 20289673 20289722 -156684418 + AT_rich Low_complexity Low_complexity 1 49 0 1249 231 218 14 chrX 20289725 20290279 -156683861 + L1M4 LINE L1 4358 5024 -1122 460 226 0 0 chrX 20290888 20290972 -156683168 + MLT1D LTR MaLR 1 84 -421 1989 238 33 1 chrX 20290976 20291484 -156682656 - MER77 LTR ERV1 -7 598 7 1185 209 60 97 chrX 20291471 20291611 -156682529 + MLT1D LTR MaLR 58 202 -303 * 2318 92 3 3 chrX 20291611 20291914 -156682226 + AluSq SINE Alu 1 303 -10 1185 209 60 97 chrX 20291914 20292172 -156681968 + MLT1D LTR MaLR 202 439 -66 1930 147 0 13 chrX 20292172 20292479 -156681661 + AluSx SINE Alu 1 303 -9 1185 209 60 97 chrX 20292479 20292542 -156681598 + MLT1D LTR MaLR 439 503 -2 204 40 0 0 chrX 20292598 20292623 -156681517 + (TG)n Simple_repeat Simple_repeat 2 26 0 258 246 0 14 chrX 20292677 20292746 -156681394 + (CA)n Simple_repeat Simple_repeat 1 68 0 3243 219 11 2 chrX 20293513 20294153 -156679987 - MER82 DNA MER2_type -7 646 1 1260 219 4 4 chrX 20294320 20294558 -156679582 + MER8 DNA MER2_type 1 238 -1 357 209 0 70 chrX 20295371 20295486 -156678654 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 316 168 34 45 chrX 20295500 20295679 -156678461 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 24 53 0 0 chrX 20296362 20296400 -156677740 + AT_rich Low_complexity Low_complexity 1 38 0 255 61 0 0 chrX 20297220 20297253 -156676887 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2160 84 14 3 chrX 20299033 20299320 -156674820 - AluSx SINE Alu -22 290 1 30 45 0 0 chrX 20299371 20299415 -156674725 + AT_rich Low_complexity Low_complexity 1 44 0 294 265 0 139 chrX 20299441 20299592 -156674548 + L3 LINE CR1 1293 1422 -155 497 208 62 99 chrX 20299740 20299932 -156674208 - MIR SINE MIR -76 186 2 282 374 0 38 chrX 20300473 20300604 -156673536 + L3 LINE CR1 1433 1558 -19 7721 22 0 0 chrX 20301152 20302570 -156671570 - L1PA3 LINE L1 -3 6152 4735 33 73 0 0 chrX 20302654 20302722 -156671418 + AT_rich Low_complexity Low_complexity 1 68 0 2498 89 27 16 chrX 20302840 20303211 -156670929 - THE1C LTR MaLR 0 375 1 3796 135 33 9 chrX 20303463 20304131 -156670009 + L1MC1 LINE L1 5650 6333 0 28 29 0 0 chrX 20304267 20304302 -156669838 + AT_rich Low_complexity Low_complexity 1 35 0 670 276 91 38 chrX 20304343 20304683 -156669457 + L1ME4a LINE L1 5512 5869 -252 27 49 0 0 chrX 20304734 20304775 -156669365 + AT_rich Low_complexity Low_complexity 1 41 0 1145 165 86 131 chrX 20304819 20305201 -156668939 + MLT1A1 LTR MaLR 1 365 0 1217 184 224 3 chrX 20305930 20306229 -156667911 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chrX 20306917 20306939 -156667201 + AT_rich Low_complexity Low_complexity 1 22 0 270 333 50 25 chrX 20307316 20307475 -156666665 - MIR SINE MIR -51 211 49 635 304 43 16 chrX 20307747 20308000 -156666140 + MLT1I LTR MaLR 2 261 -148 238 346 93 0 chrX 20307994 20308101 -156666039 + MLT1I LTR MaLR 215 331 -78 * 3404 170 111 15 chrX 20308656 20309397 -156664743 - L1MA9 LINE L1 -10 6302 5491 244 336 69 30 chrX 20310830 20310961 -156663179 + L2 LINE L2 3137 3272 0 213 281 11 0 chrX 20311178 20311267 -156662873 + (TA)n Simple_repeat Simple_repeat 2 91 0 1769 220 33 8 chrX 20311281 20311677 -156662463 + MER63B DNA MER1_type 3 408 -28 1284 229 20 47 chrX 20312376 20312677 -156661463 + L1ME4a LINE L1 -541 4294967047 -6557 406 276 0 0 chrX 20312826 20312924 -156661216 + L1ME4a LINE L1 5131 5228 -1178 1040 288 88 32 chrX 20313074 20313484 -156660656 + MLT1J LTR MaLR 79 511 0 364 341 129 21 chrX 20313488 20313907 -156660233 - L2 LINE L2 -21 3292 2829 350 301 86 67 chrX 20314750 20315136 -156659004 + L1ME4a LINE L1 5928 6320 -61 24 0 0 0 chrX 20315152 20315176 -156658964 + AT_rich Low_complexity Low_complexity 1 24 0 3892 89 19 0 chrX 20315246 20315788 -156658352 - L1P LINE L1 -1921 4225 3674 444 342 71 67 chrX 20316121 20316796 -156657344 - L2 LINE L2 -367 2947 2270 21 36 0 0 chrX 20317609 20317637 -156656503 + AT_rich Low_complexity Low_complexity 1 28 0 318 359 46 15 chrX 20317926 20318121 -156656019 - L2 LINE L2 -229 3043 2843 224 315 0 56 chrX 20318747 20318890 -156655250 - L2 LINE L2 -720 2594 2460 844 222 14 27 chrX 20319268 20319489 -156654651 + MER20 DNA MER1_type 2 219 0 833 278 86 24 chrX 20319599 20319937 -156654203 - MLT1J2 LTR MaLR -14 436 78 189 0 0 0 chrX 20321399 20321420 -156652720 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 0 0 0 chrX 20322601 20322628 -156651512 + AT_rich Low_complexity Low_complexity 1 27 0 2314 60 7 0 chrX 20322689 20322993 -156651147 - AluY SINE Alu 0 306 1 22 80 0 0 chrX 20323008 20323058 -156651082 + AT_rich Low_complexity Low_complexity 1 50 0 2082 79 57 7 chrX 20323185 20323465 -156650675 - AluSq SINE Alu -11 302 9 2194 287 21 31 chrX 20323669 20324405 -156649735 + L1M4b LINE L1 7 647 -5762 2270 281 50 18 chrX 20324413 20325215 -156648925 + L1MD2 LINE L1 339 1075 -5334 2210 107 0 0 chrX 20325221 20325519 -156648621 + AluSx SINE Alu 1 298 -14 2525 222 78 34 chrX 20325521 20326001 -156648139 + L1MD2 LINE L1 4636 5093 -1526 912 99 56 12 chrX 20326001 20326162 -156647978 - L1MA10 LINE L1 -2 6332 6165 2525 222 78 34 chrX 20326162 20326448 -156647692 + L1MD2 LINE L1 5093 5365 -1254 1652 148 0 4 chrX 20326448 20326698 -156647442 + AluSx SINE Alu 3 251 -61 2525 222 78 34 chrX 20326698 20327374 -156646766 + L1MD2 LINE L1 5365 6144 -475 1869 258 13 7 chrX 20327381 20327920 -156646220 - L1P LINE L1 -3228 2918 2377 3956 128 6 8 chrX 20327926 20328557 -156645583 + L1PA16 LINE L1 5534 6163 -3 269 206 59 88 chrX 20328559 20328600 -156645540 + L1MD2 LINE L1 6141 6182 -437 1521 192 26 10 chrX 20328600 20328902 -156645238 - AluJo SINE Alu -3 309 3 269 206 59 88 chrX 20328902 20328962 -156645178 + L1MD2 LINE L1 6182 6239 -380 1537 186 13 0 chrX 20329283 20329590 -156644550 - L1MB5 LINE L1 0 6174 5864 938 241 49 52 chrX 20329594 20329942 -156644198 + L1MD2 LINE L1 6258 6604 -15 24 32 0 0 chrX 20330393 20330424 -156643716 + AT_rich Low_complexity Low_complexity 1 31 0 355 280 143 16 chrX 20331281 20331463 -156642677 - MIR SINE MIR -47 215 11 244 322 50 33 chrX 20332526 20332647 -156641493 + MIR3 SINE MIR 67 189 -19 303 311 160 0 chrX 20333701 20333807 -156640333 - L2 LINE L2 -2 3270 3148 2366 98 0 0 chrX 20334546 20334852 -156639288 + AluSx SINE Alu 1 306 -6 2378 79 3 13 chrX 20334930 20335245 -156638895 - AluSx SINE Alu 0 312 1 26 30 0 0 chrX 20335510 20335543 -156638597 + AT_rich Low_complexity Low_complexity 1 33 0 5734 167 51 40 chrX 20337154 20337800 -156636340 - L1PA16 LINE L1 0 6166 5529 1700 158 53 0 chrX 20337800 20338085 -156636055 - AluSx SINE Alu -12 300 1 5734 167 51 40 chrX 20338085 20338440 -156635700 - L1PA16 LINE L1 -637 5529 5180 2071 128 7 0 chrX 20338440 20338736 -156635404 + AluSx SINE Alu 1 298 -14 5734 167 51 40 chrX 20338736 20339967 -156634173 - L1PA16 LINE L1 -986 5180 3908 22 0 0 0 chrX 20342460 20342482 -156631658 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 20342839 20342860 -156631280 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 20343272 20343301 -156630839 + AT_rich Low_complexity Low_complexity 1 29 0 403 309 143 0 chrX 20343617 20343876 -156630264 - L1ME LINE L1 -579 5568 5273 225 286 26 90 chrX 20344006 20344272 -156629868 - L1ME LINE L1 -1222 4907 4659 443 257 66 46 chrX 20344284 20344634 -156629506 - L1ME LINE L1 -4906 1213 857 309 26 0 0 chrX 20344767 20344805 -156629335 + (TGG)n Simple_repeat Simple_repeat 3 40 0 360 0 0 0 chrX 20345062 20345102 -156629038 + (TG)n Simple_repeat Simple_repeat 2 41 0 2950 163 25 42 chrX 20346465 20347059 -156627081 + L1MC1 LINE L1 5453 6036 -297 1224 162 4 58 chrX 20347059 20347300 -156626840 - MER46A DNA MER2_type -5 231 4 1352 184 40 7 chrX 20347300 20347578 -156626562 + L1MC1 LINE L1 6047 6333 0 21 82 0 0 chrX 20350049 20350098 -156624042 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chrX 20350179 20350207 -156623933 + AT_rich Low_complexity Low_complexity 1 28 0 253 305 162 24 chrX 20351005 20351172 -156622968 - MIR3 SINE MIR -4 204 15 629 161 18 0 chrX 20353533 20353645 -156620495 - L1MA4 LINE L1 -7 6293 6180 21 0 0 0 chrX 20353848 20353869 -156620271 + AT_rich Low_complexity Low_complexity 1 21 0 201 129 0 0 chrX 20354464 20354495 -156619645 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 362 273 121 18 chrX 20355228 20355393 -156618747 - MLT1L LTR MaLR -412 203 22 26 0 0 0 chrX 20355558 20355584 -156618556 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 20355866 20355888 -156618252 + AT_rich Low_complexity Low_complexity 1 22 0 29 78 0 0 chrX 20355912 20355976 -156618164 + AT_rich Low_complexity Low_complexity 1 64 0 234 208 56 0 chrX 20356124 20356196 -156617944 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 2028 123 0 77 chrX 20356205 20356570 -156617570 + MER1B DNA MER1_type 1 337 0 249 232 0 0 chrX 20356575 20356644 -156617496 + (TA)n Simple_repeat Simple_repeat 1 69 0 2267 110 0 0 chrX 20357279 20357589 -156616551 + AluSq SINE Alu 1 310 -3 2258 68 0 0 chrX 20358389 20358710 -156615430 + AluY SINE Alu 1 321 0 186 133 0 0 chrX 20359138 20359168 -156614972 + (TAA)n Simple_repeat Simple_repeat 2 31 0 2145 121 0 0 chrX 20359746 20360051 -156614089 + AluSg SINE Alu 1 305 -5 1122 144 64 0 chrX 20362508 20362696 -156611444 + L1MA8 LINE L1 4030 4229 -1917 24 53 0 0 chrX 20362703 20362741 -156611399 + AT_rich Low_complexity Low_complexity 1 38 0 3387 164 29 14 chrX 20362761 20363382 -156610758 - L1PB4 LINE L1 -79 6077 5448 * 5700 150 47 25 chrX 20363379 20363491 -156610649 + L1MA8 LINE L1 4243 4351 -1940 5658 113 20 6 chrX 20363491 20364616 -156609524 + L1PB1 LINE L1 5017 6150 -1 5700 150 47 25 chrX 20364616 20364668 -156609472 + L1MA8 LINE L1 4351 4400 -1891 1972 125 0 0 chrX 20364668 20364948 -156609192 + AluSx SINE Alu 1 280 -32 5700 150 47 25 chrX 20364948 20366615 -156607525 + L1MA8 LINE L1 4400 6126 -165 1589 162 101 0 chrX 20366615 20366942 -156607198 - MER46B DNA MER2_type 0 236 2 5700 150 47 25 chrX 20366942 20367109 -156607031 + L1MA8 LINE L1 6126 6288 -3 2281 83 0 52 chrX 20367428 20367755 -156606385 - AluSx SINE Alu -2 310 1 227 279 98 0 chrX 20368019 20368080 -156606060 + MIR SINE MIR 84 150 -112 249 128 0 0 chrX 20368188 20368235 -156605905 + (CA)n Simple_repeat Simple_repeat 2 48 0 2205 125 0 3 chrX 20369185 20369497 -156604643 + AluSq SINE Alu 1 311 -2 448 57 0 29 chrX 20369497 20369567 -156604573 + (GGGA)n Simple_repeat Simple_repeat 3 70 0 2134 120 7 0 chrX 20370167 20370467 -156603673 + AluSq SINE Alu 3 304 -9 2377 58 0 3 chrX 20370517 20370833 -156603307 + AluY SINE Alu 4 318 0 624 258 48 83 chrX 20370971 20371154 -156602986 + MIR SINE MIR 19 192 -70 443 215 58 29 chrX 20371154 20371326 -156602814 - MER104 DNA MER2_type -3 177 1 624 258 48 83 chrX 20371326 20371394 -156602746 + MIR SINE MIR 192 261 -1 389 291 115 18 chrX 20372157 20372322 -156601818 - MIR SINE MIR 0 262 82 318 123 0 0 chrX 20372324 20372381 -156601759 + (CA)n Simple_repeat Simple_repeat 1 57 0 296 137 20 0 chrX 20372483 20372534 -156601606 + L1MA3 LINE L1 6254 6305 0 2839 225 30 37 chrX 20372719 20373479 -156600661 - L1MD2 LINE L1 -2 6357 5603 1539 188 36 22 chrX 20373509 20373865 -156600275 - L1MA7 LINE L1 -1 6290 5930 1562 124 0 4 chrX 20373896 20374121 -156600019 - AluSq SINE Alu -89 224 1 1673 199 17 9 chrX 20374277 20374711 -156599429 - L1MCa LINE L1 -4422 2185 1691 782 300 72 62 chrX 20374719 20375206 -156598934 + LTR33 LTR ERVL 28 519 -2 22 0 0 0 chrX 20375750 20375772 -156598368 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 20376260 20376289 -156597851 + AT_rich Low_complexity Low_complexity 1 29 0 2300 214 42 67 chrX 20376769 20377951 -156596189 + L1MC/D LINE L1 4462 5605 -637 388 63 14 0 chrX 20377955 20378018 -156596122 + Alu SINE Alu 247 295 -7 306 0 0 0 chrX 20378417 20378451 -156595689 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chrX 20378993 20379017 -156595123 + (TC)n Simple_repeat Simple_repeat 2 25 0 226 191 0 0 chrX 20379101 20379143 -156594997 + MER69 DNA AcHobo 9 50 -1176 233 314 0 0 chrX 20379874 20379925 -156594215 + MER58 DNA MER1_type 1 51 -2369 4904 221 28 26 chrX 20379942 20381861 -156592279 - L1MD1 LINE L1 -25 6217 4288 * 6205 208 68 28 chrX 20381836 20383392 -156590748 - L1MC1 LINE L1 -6 6327 4834 1977 119 0 18 chrX 20383392 20383702 -156590438 - AluSx SINE Alu 0 305 1 6205 208 68 28 chrX 20383702 20385220 -156588920 - L1MC1 LINE L1 -1499 4834 3121 470 323 5 15 chrX 20386701 20386896 -156587244 + LTR33 LTR ERVL 328 520 -1 441 0 0 0 chrX 20387374 20387423 -156586717 + (CA)n Simple_repeat Simple_repeat 2 50 0 2538 214 127 38 chrX 20387435 20388349 -156585791 + L1MD2 LINE L1 890 1884 -4656 531 232 7 7 chrX 20388340 20388491 -156585649 + L1M4 LINE L1 3594 3744 -2402 * 1965 272 29 30 chrX 20388499 20388959 -156585181 + L1M4 LINE L1 3859 4319 -1827 782 179 26 0 chrX 20388959 20389115 -156585025 + L1MB1 LINE L1 6008 6167 -1 1965 272 29 30 chrX 20389115 20389408 -156584732 + L1M4 LINE L1 4319 4611 -1535 2278 120 6 8 chrX 20390119 20390476 -156583664 - L1PA16 LINE L1 -9 6157 5802 4189 180 21 26 chrX 20390477 20391390 -156582750 + L1 LINE L1 4427 5336 -810 1582 174 42 3 chrX 20391390 20391677 -156582463 - AluJb SINE Alu -14 298 1 4189 180 21 26 chrX 20391677 20391728 -156582412 + L1 LINE L1 5336 5386 -760 1627 203 4 0 chrX 20391777 20392058 -156582082 + AluJo SINE Alu 1 282 -30 492 209 5 105 chrX 20392231 20392441 -156581699 + L1MD2 LINE L1 4866 5054 -1486 1790 208 157 50 chrX 20392484 20393104 -156581036 + L1MD2 LINE L1 6073 6738 0 572 205 154 13 chrX 20393546 20393702 -156580438 - MER5A DNA MER1_type -1 188 11 305 206 147 0 chrX 20398233 20398335 -156575805 - MER69A DNA AcHobo -13 164 48 1434 85 25 0 chrX 20399659 20399860 -156574280 + L1PA13 LINE L1 5956 6161 -2 191 35 0 35 chrX 20400354 20400383 -156573757 + (TTG)n Simple_repeat Simple_repeat 2 29 0 333 267 0 23 chrX 20401991 20402077 -156572063 - L2 LINE L2 0 3272 3189 707 365 59 13 chrX 20402314 20402785 -156571355 - L2 LINE L2 -337 2977 2485 574 349 13 8 chrX 20404223 20404458 -156569682 - MIR SINE MIR -12 250 15 321 276 26 86 chrX 20405134 20405250 -156568890 + MER91C DNA MER1_type 14 122 -18 2355 88 3 0 chrX 20405499 20405804 -156568336 + AluSx SINE Alu 1 306 -6 23 33 0 0 chrX 20405886 20405916 -156568224 + AT_rich Low_complexity Low_complexity 1 30 0 23 68 0 0 chrX 20406091 20406135 -156568005 + AT_rich Low_complexity Low_complexity 1 44 0 1165 320 106 43 chrX 20406804 20407632 -156566508 + L2 LINE L2 1905 2810 -504 180 0 0 0 chrX 20407632 20407652 -156566488 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1165 320 106 43 chrX 20407652 20407832 -156566308 + L2 LINE L2 2810 2977 -337 4081 214 55 32 chrX 20408400 20409261 -156564879 + L1MD2 LINE L1 5254 6146 -213 210 37 0 0 chrX 20409261 20409288 -156564852 + (CA)n Simple_repeat Simple_repeat 1 27 0 4081 214 55 32 chrX 20409288 20409497 -156564643 + L1MD2 LINE L1 6146 6349 -10 246 268 0 0 chrX 20409890 20409946 -156564194 - L2 LINE L2 -4 3309 3254 306 402 61 12 chrX 20410222 20410548 -156563592 + L2 LINE L2 2633 2974 -340 315 0 0 0 chrX 20410962 20410997 -156563143 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 363 37 22 chrX 20412721 20412856 -156561284 + L2 LINE L2 3177 3313 0 2215 112 0 0 chrX 20413410 20413705 -156560435 - AluSx SINE Alu -17 295 1 2119 124 0 6 chrX 20415006 20415320 -156558820 + AluSx SINE Alu 1 312 0 702 0 114 0 chrX 20415708 20415866 -156558274 + (TA)n Simple_repeat Simple_repeat 1 176 0 9396 141 28 14 chrX 20415892 20416545 -156557595 + L1M1 LINE L1 1575 2218 -5347 2083 129 0 10 chrX 20416545 20416848 -156557292 + AluSx SINE Alu 1 300 -12 9396 141 28 14 chrX 20416848 20417850 -156556290 + L1M1 LINE L1 2218 3252 -4313 3256 197 53 1 chrX 20417842 20418654 -156555486 + L1M1 LINE L1 4298 5151 -2414 * 241 181 85 21 chrX 20418860 20418954 -156555186 - L1MD3 LINE L1 0 7995 7896 489 326 76 42 chrX 20419045 20419428 -156554712 - L1M4 LINE L1 -1745 4401 4006 880 246 27 0 chrX 20419724 20419944 -156554196 - L1PA16 LINE L1 -5 6161 5936 2260 149 26 0 chrX 20419948 20420330 -156553810 - L1PA16 LINE L1 -5 6161 5770 3468 164 11 0 chrX 20420427 20421035 -156553105 - L1PA16 LINE L1 -3 7601 6987 2090 184 39 5 chrX 20421035 20421447 -156552693 + MSTB LTR MaLR 1 426 0 2642 208 86 57 chrX 20421447 20422480 -156551660 + MSTB-int LTR MaLR 1 1065 -515 * 9228 196 36 11 chrX 20422464 20424230 -156549910 - L1M1 LINE L1 -5736 1829 19 6530 224 32 5 chrX 20424231 20425819 -156548321 - L1PA16 LINE L1 -847 6737 5107 5095 161 16 9 chrX 20426148 20427091 -156547049 - L1MA5A LINE L1 -6 6291 5343 4893 113 4 1 chrX 20427497 20428229 -156545911 - L1PA14 LINE L1 0 6161 5428 13311 159 32 48 chrX 20428230 20431650 -156542490 - L1PA16 LINE L1 -3972 3612 1 216 175 0 0 chrX 20431718 20431758 -156542382 + (CA)n Simple_repeat Simple_repeat 1 40 0 1112 218 29 71 chrX 20432939 20433320 -156540820 - MLT1A1 LTR MaLR 0 365 1 413 347 47 0 chrX 20433641 20433834 -156540306 + MER69 DNA AcHobo 77 278 -2248 1765 214 92 37 chrX 20433836 20434832 -156539308 + MER69 DNA AcHobo 1460 2526 0 7516 30 0 1 chrX 20435665 20437152 -156536988 - L1PA4 LINE L1 -7 6148 4663 6683 33 4 0 chrX 20437152 20437965 -156536175 + L1PA4 LINE L1 3839 4654 -1492 22 0 0 0 chrX 20438140 20438162 -156535978 + AT_rich Low_complexity Low_complexity 1 22 0 10600 217 42 45 chrX 20438561 20440405 -156533735 - L1MB1 LINE L1 0 6404 4557 2278 108 3 0 chrX 20440405 20440711 -156533429 + AluSq SINE Alu 1 307 -6 10600 217 42 45 chrX 20440711 20441193 -156532947 - L1MB1 LINE L1 -1847 4557 4075 2067 112 7 14 chrX 20441193 20441488 -156532652 - AluSg SINE Alu -17 293 1 10600 217 42 45 chrX 20441488 20444882 -156529258 - L1MB1 LINE L1 -2329 4075 796 325 377 14 27 chrX 20445038 20445184 -156528956 - L1M3de LINE L1 -5224 667 524 421 330 28 64 chrX 20445252 20445482 -156528658 - L1M3de LINE L1 -5217 674 185 559 284 0 14 chrX 20445486 20445634 -156528506 - L1M3de LINE L1 -5735 156 11 252 0 0 0 chrX 20446642 20446670 -156527470 + (TA)n Simple_repeat Simple_repeat 2 29 0 2494 60 0 19 chrX 20446673 20446990 -156527150 - AluY SINE Alu 0 311 1 194 299 103 54 chrX 20447045 20447249 -156526891 - L2 LINE L2 -168 3104 2891 306 245 158 36 chrX 20447362 20447501 -156526639 + MIR3 SINE MIR 32 187 -21 204 97 0 0 chrX 20447892 20447923 -156526217 + (TG)n Simple_repeat Simple_repeat 1 31 0 285 108 31 15 chrX 20448246 20448311 -156525829 + (TA)n Simple_repeat Simple_repeat 1 66 0 492 203 136 8 chrX 20448476 20448594 -156525546 - MER5A DNA MER1_type -2 187 55 192 77 0 0 chrX 20448750 20448776 -156525364 + (CA)n Simple_repeat Simple_repeat 1 26 0 2161 117 47 33 chrX 20448831 20449190 -156524950 + THE1B LTR MaLR 1 364 0 1014 296 113 27 chrX 20449911 20450059 -156524081 - L1MC4a LINE L1 -1866 5942 5808 2268 162 50 21 chrX 20450059 20450479 -156523661 - MSTB1 LTR MaLR 0 432 1 1014 296 113 27 chrX 20450479 20450838 -156523302 - L1MC4a LINE L1 -2000 5808 5481 213 39 0 0 chrX 20450838 20450864 -156523276 + (TA)n Simple_repeat Simple_repeat 2 27 0 2479 65 0 0 chrX 20450864 20451158 -156522982 - AluY SINE Alu -17 294 1 1014 296 113 27 chrX 20451158 20451277 -156522863 - L1MC4a LINE L1 -2326 5482 5260 304 307 132 38 chrX 20451438 20451725 -156522415 - MLT1J LTR MaLR -185 326 13 6088 94 11 23 chrX 20453120 20454905 -156519235 + L1PA13 LINE L1 4388 6163 0 25 0 0 0 chrX 20454973 20454998 -156519142 + AT_rich Low_complexity Low_complexity 1 25 0 402 57 0 0 chrX 20455127 20455180 -156518960 + (TG)n Simple_repeat Simple_repeat 2 54 0 2250 149 3 3 chrX 20455362 20455751 -156518389 - L1MB3 LINE L1 -8 6175 5787 203 182 36 18 chrX 20455757 20455812 -156518328 + (TA)n Simple_repeat Simple_repeat 2 57 0 3960 156 39 10 chrX 20455812 20456538 -156517602 + Tigger2 DNA MER2_type 2 748 -1970 975 131 61 25 chrX 20456598 20456665 -156517475 + Tigger2 DNA MER2_type 2462 2525 -193 7157 29 1 0 chrX 20456665 20457528 -156516612 + L1PA3 LINE L1 5296 6159 0 975 131 61 25 chrX 20457528 20457657 -156516483 + Tigger2 DNA MER2_type 2525 2666 -52 12434 229 32 18 chrX 20457663 20463042 -156511098 - L1PB4 LINE L1 -6 6207 686 1147 301 50 19 chrX 20463023 20463490 -156510650 - L1PBb LINE L1 -5286 917 353 * 384 370 45 8 chrX 20463612 20463855 -156510285 - L1PBb LINE L1 -5847 357 106 788 362 58 26 chrX 20463937 20464592 -156509548 - L1M2b LINE L1 -5257 1952 1 354 210 0 0 chrX 20464603 20464671 -156509469 + Tigger2 DNA MER2_type 2650 2708 -10 2475 194 16 27 chrX 20464690 20465589 -156508551 - L1M3 LINE L1 -401 5782 4891 2199 51 0 0 chrX 20466900 20467176 -156506964 + AluY SINE Alu 30 311 0 405 326 79 11 chrX 20469350 20469540 -156504600 - LTR16A LTR ERVL -160 290 88 8728 162 18 161 chrX 20471127 20472921 -156501219 + L1PA13 LINE L1 1904 3153 -2993 3093 35 0 68 chrX 20472921 20473349 -156500791 - L1PA5 LINE L1 -5 6149 5751 8728 162 18 161 chrX 20473349 20474362 -156499778 + L1PA13 LINE L1 3153 4309 -1837 5247 128 47 11 chrX 20474363 20475293 -156498847 + L1PA13 LINE L1 5199 6163 0 351 206 53 15 chrX 20475559 20475690 -156498450 + (TA)n Simple_repeat Simple_repeat 2 137 0 268 192 0 0 chrX 20476646 20476698 -156497442 + L1MC4 LINE L1 6652 6703 -1339 261 204 0 82 chrX 20476670 20476768 -156497372 - L1MC4 LINE L1 -1339 6703 6614 * 226 326 0 0 chrX 20476700 20476789 -156497351 + L1MC4 LINE L1 6614 6702 -1340 * 233 245 21 11 chrX 20476966 20477060 -156497080 + L1MC4 LINE L1 6614 6708 -1334 402 333 55 6 chrX 20477394 20477559 -156496581 + MIR SINE MIR 86 258 -4 367 317 87 12 chrX 20477590 20477751 -156496389 + MIR SINE MIR 86 258 -4 223 159 14 72 chrX 20478438 20478507 -156495633 + CT-rich Low_complexity Low_complexity 2 66 0 254 246 0 18 chrX 20480522 20480632 -156493508 + (CATA)n Simple_repeat Simple_repeat 1 108 0 477 283 86 30 chrX 20480993 20481226 -156492914 - L2 LINE L2 -21 3292 3047 236 264 44 11 chrX 20481433 20481524 -156492616 - MLT1J2 LTR MaLR -289 161 68 21 0 0 0 chrX 20481603 20481624 -156492516 + AT_rich Low_complexity Low_complexity 1 21 0 5162 64 8 0 chrX 20483067 20483737 -156490403 + L1PA7 LINE L1 5477 6151 -3 225 0 0 0 chrX 20483742 20483767 -156490373 + (TA)n Simple_repeat Simple_repeat 1 25 0 9612 167 23 32 chrX 20483767 20486340 -156487800 - L1PA15 LINE L1 -25 6140 3596 2103 81 53 0 chrX 20486340 20486623 -156487517 + AluY SINE Alu 1 298 -13 9612 167 23 32 chrX 20486623 20486901 -156487239 - L1PA15 LINE L1 -2569 3596 3317 225 345 48 90 chrX 20487348 20487493 -156486647 + MIR SINE MIR 2 140 -122 867 220 22 0 chrX 20489447 20489629 -156484511 - MER5A DNA MER1_type 0 189 4 864 329 165 29 chrX 20489642 20490299 -156483841 + L2 LINE L2 2555 3313 0 243 299 28 37 chrX 20493863 20493970 -156480170 + 7SK RNA RNA 3 108 -85 186 48 24 48 chrX 20494980 20495022 -156479118 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 220 327 0 0 chrX 20495042 20495097 -156479043 + (CATG)n Simple_repeat Simple_repeat 3 57 0 200 86 29 0 chrX 20495115 20495150 -156478990 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1760 183 0 10 chrX 20495509 20495821 -156478319 + AluJo SINE Alu 3 311 -1 256 361 0 0 chrX 20497314 20497375 -156476765 - L3 LINE CR1 -936 641 581 185 222 28 0 chrX 20497418 20497454 -156476686 - MIR SINE MIR -7 255 219 274 281 107 16 chrX 20497547 20497668 -156476472 - MIR SINE MIR -73 189 58 297 175 0 75 chrX 20498385 20498465 -156475675 - MIR SINE MIR -66 196 123 2167 114 0 0 chrX 20500072 20500361 -156473779 + AluSx SINE Alu 1 289 -23 875 251 5 14 chrX 20500397 20500616 -156473524 - MER20 DNA MER1_type 0 219 3 394 329 32 19 chrX 20500800 20500958 -156473182 + MER5A DNA MER1_type 4 163 -26 308 299 36 44 chrX 20500836 20500973 -156473167 - MER5A DNA MER1_type -30 159 24 * 28 61 0 0 chrX 20501285 20501334 -156472806 + AT_rich Low_complexity Low_complexity 1 49 0 2850 201 13 18 chrX 20502125 20502172 -156471968 - MLT2B3 LTR ERVL 0 554 508 603 117 0 0 chrX 20502172 20502266 -156471874 + (CAGA)n Simple_repeat Simple_repeat 3 96 0 2850 201 13 18 chrX 20502266 20502775 -156471365 - MLT2B3 LTR ERVL -46 508 1 31 26 0 0 chrX 20502877 20502915 -156471225 + AT_rich Low_complexity Low_complexity 1 38 0 5675 48 1 0 chrX 20503750 20504443 -156469697 - L1PA5 LINE L1 -3 6151 5458 905 9 9 0 chrX 20504443 20504555 -156469585 + L1PA5 LINE L1 5345 5457 -697 261 321 151 0 chrX 20505283 20505442 -156468698 + L2 LINE L2 3116 3298 -15 979 163 42 0 chrX 20505960 20506150 -156467990 + L1MA4 LINE L1 6088 6285 -15 5643 148 7 60 chrX 20506174 20507266 -156466874 + L1MC1 LINE L1 5299 6332 -1 5110 143 26 6 chrX 20507971 20508820 -156465320 + L1PB1 LINE L1 1084 1949 -4914 5919 118 31 0 chrX 20508830 20509853 -156464287 + L1PB1 LINE L1 5816 6864 -3 520 243 36 18 chrX 20510321 20510484 -156463656 - MIR SINE MIR 0 262 99 249 294 83 78 chrX 20510663 20510843 -156463297 + MIR3 SINE MIR 23 203 -5 6042 95 21 4 chrX 20512193 20513089 -156461051 + L1PA12 LINE L1 5260 6168 0 1708 188 11 6 chrX 20513087 20513438 -156460702 + L1P LINE L1 4364 4716 -1430 * 3219 166 8 0 chrX 20513437 20514028 -156460112 - L1PA13 LINE L1 -1566 5231 4636 641 278 78 36 chrX 20514013 20514286 -156459854 - L1MDa LINE L1 -4317 2223 1930 * 1896 9 0 0 chrX 20514286 20514503 -156459637 - L1PA2 LINE L1 -4 6151 5935 641 278 78 36 chrX 20514503 20514589 -156459551 - L1MDa LINE L1 -4610 1930 1849 2755 16 0 0 chrX 20515095 20515405 -156458735 + AluYb8 SINE Alu 1 310 -8 2435 62 0 13 chrX 20516068 20516375 -156457765 + AluY SINE Alu 1 303 -8 5958 111 6 0 chrX 20516705 20517812 -156456328 - L1PA12 LINE L1 -15 6153 5044 1300 186 0 4 chrX 20517818 20518087 -156456053 - L1 LINE L1 -1299 5498 5231 446 240 41 0 chrX 20518088 20518209 -156455931 + L1M4 LINE L1 2597 2722 -3424 * 713 183 0 0 chrX 20518203 20518334 -156455806 + L1P LINE L1 4212 4342 -1804 13412 201 15 16 chrX 20518342 20519528 -156454612 - L1PA13 LINE L1 -2343 4454 3268 2149 122 3 0 chrX 20519528 20519832 -156454308 - AluSq SINE Alu -8 305 1 13412 201 15 16 chrX 20519832 20522290 -156451850 - L1PA13 LINE L1 -3529 3268 839 252 0 0 0 chrX 20522290 20522318 -156451822 + (CA)n Simple_repeat Simple_repeat 2 29 0 13412 201 15 16 chrX 20522318 20523157 -156450983 - L1PA13 LINE L1 -5958 839 1 1393 264 10 12 chrX 20523172 20523680 -156450460 - L1M4 LINE L1 -2573 3573 3067 1377 192 95 6 chrX 20523693 20524010 -156450130 + L1MD2 LINE L1 6011 6355 -4 294 233 27 0 chrX 20523994 20524067 -156450073 + L1MEc LINE L1 1614 1688 -4708 * 2055 159 35 43 chrX 20524068 20524618 -156449522 - MLT2A2 LTR ERVL 0 554 1 254 234 65 19 chrX 20524745 20524852 -156449288 + L1MEc LINE L1 1849 1960 -4436 343 292 196 3 chrX 20524903 20525276 -156448864 + L1MEc LINE L1 2229 2673 -3542 1107 335 88 44 chrX 20525281 20526241 -156447899 + L2 LINE L2 1960 2961 -353 308 352 208 0 chrX 20526375 20526500 -156447640 + L2 LINE L2 3122 3272 0 227 200 0 0 chrX 20526779 20526824 -156447316 - L2 LINE L2 0 3313 3269 515 357 98 32 chrX 20526881 20527453 -156446687 - L2 LINE L2 -60 3253 2641 23 33 0 0 chrX 20527539 20527569 -156446571 + AT_rich Low_complexity Low_complexity 1 30 0 1877 231 70 58 chrX 20528183 20528246 -156445894 - L1ME1 LINE L1 -2 6164 6103 204 40 0 0 chrX 20528246 20528271 -156445869 + (CA)n Simple_repeat Simple_repeat 2 26 0 1877 231 70 58 chrX 20528271 20528892 -156445248 - L1ME1 LINE L1 -63 6103 5472 637 300 74 4 chrX 20528935 20529178 -156444962 - MIR SINE MIR 0 262 3 1314 266 32 5 chrX 20529309 20529718 -156444422 - Charlie4a DNA MER1_type -75 433 14 193 397 0 0 chrX 20529755 20529828 -156444312 + L2 LINE L2 3173 3245 -27 219 413 22 0 chrX 20529861 20529953 -156444187 - L2 LINE L2 -43 3229 3136 380 268 58 36 chrX 20529994 20530132 -156444008 + MIR SINE MIR 61 201 -61 1098 262 95 40 chrX 20530427 20531080 -156443060 + L1M4c LINE L1 2851 3539 -4026 905 136 0 8 chrX 20531082 20531214 -156442926 + FLAM_C SINE Alu 1 131 -12 1745 254 34 30 chrX 20531217 20531454 -156442686 + L1M4c LINE L1 3510 3744 -3821 2227 111 0 7 chrX 20531454 20531760 -156442380 + AluSx SINE Alu 1 304 -8 1745 254 34 30 chrX 20531760 20532172 -156441968 + L1M4c LINE L1 3744 4160 -3405 6102 159 31 4 chrX 20532179 20534195 -156439945 - L1PB2 LINE L1 0 6151 4086 10840 191 26 26 chrX 20534214 20535841 -156438299 + L1MA9 LINE L1 2988 4613 -1935 2907 140 35 29 chrX 20535841 20536354 -156437786 - L1MA4 LINE L1 -6 6294 5776 180 0 0 0 chrX 20536354 20536374 -156437766 + (TA)n Simple_repeat Simple_repeat 1 20 0 2907 140 35 29 chrX 20536374 20536411 -156437729 - L1MA4 LINE L1 -524 5776 5741 10840 191 26 26 chrX 20536411 20536517 -156437623 + L1MA9 LINE L1 4613 4717 -1831 2391 82 0 0 chrX 20536517 20536821 -156437319 - AluSx SINE Alu -8 304 1 10840 191 26 26 chrX 20536821 20538607 -156435533 + L1MA9 LINE L1 4717 6515 -33 263 386 0 7 chrX 20538649 20538794 -156435346 - L2 LINE L2 -317 2955 2812 279 0 0 0 chrX 20539133 20539164 -156434976 + (CA)n Simple_repeat Simple_repeat 1 31 0 324 0 0 0 chrX 20541180 20541216 -156432924 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chrX 20543397 20543424 -156430716 + (CA)n Simple_repeat Simple_repeat 1 27 0 779 305 30 121 chrX 20543723 20544679 -156429461 + L3 LINE CR1 429 1297 -280 204 276 79 13 chrX 20544789 20544865 -156429275 + L3 LINE CR1 1495 1575 -2 883 253 125 16 chrX 20544949 20545254 -156428886 + MER58B DNA MER1_type 2 339 -2 282 217 193 0 chrX 20548568 20548651 -156425489 - L2 LINE L2 -1 3271 3173 180 368 15 15 chrX 20549322 20549390 -156424750 + MIR3 SINE MIR 132 199 -9 270 167 0 0 chrX 20549574 20549634 -156424506 + (TA)n Simple_repeat Simple_repeat 2 61 0 2075 290 49 10 chrX 20549749 20550541 -156423599 - L1ME3A LINE L1 0 6170 5348 334 384 24 6 chrX 20550788 20550952 -156423188 - MIR3 SINE MIR -3 205 39 2041 109 22 0 chrX 20551181 20551491 -156422649 + AluSg SINE Alu 1 316 0 263 345 26 0 chrX 20551746 20551862 -156422278 - MIR SINE MIR -48 214 96 330 339 68 41 chrX 20552800 20553095 -156421045 + L2 LINE L2 2549 2851 -463 3393 123 66 11 chrX 20555200 20555762 -156418378 - MER51A LTR ERV1 -41 593 1 378 107 0 0 chrX 20555784 20555840 -156418300 + (A)n Simple_repeat Simple_repeat 1 56 0 2392 86 3 15 chrX 20555927 20556265 -156417875 - L1PB2 LINE L1 0 6151 5818 255 265 12 0 chrX 20557102 20557185 -156416955 + HAL1 LINE L1 62 145 -2362 502 299 10 18 chrX 20557201 20557393 -156416747 - L1MD3 LINE L1 -926 6882 6655 397 325 89 37 chrX 20557520 20557957 -156416183 - L1ME3A LINE L1 -1450 4696 4237 234 286 0 0 chrX 20558033 20558103 -156416037 - L1ME3A LINE L1 -1975 4171 4102 261 57 0 0 chrX 20558194 20558229 -156415911 + (CA)n Simple_repeat Simple_repeat 2 36 0 389 274 12 61 chrX 20558320 20558565 -156415575 + HAL1 LINE L1 810 1042 -1465 * 3635 223 33 7 chrX 20558562 20559506 -156414634 + L1M4 LINE L1 4010 4977 -1169 1215 286 110 18 chrX 20559760 20560488 -156413652 + L2 LINE L2 2366 3166 -147 239 209 22 77 chrX 20560462 20560553 -156413587 - L2 LINE L2 -100 3213 3128 * 251 292 0 0 chrX 20561712 20561801 -156412339 - L1MC4 LINE L1 -1337 6705 6617 233 154 39 19 chrX 20561807 20561859 -156412281 + L1MCa LINE L1 2016 2068 -4358 * 263 253 23 0 chrX 20561840 20561927 -156412213 - L1MC4 LINE L1 -1339 6703 6615 245 207 17 0 chrX 20561895 20561953 -156412187 + L1MCa LINE L1 2006 2064 -4362 * 315 292 0 0 chrX 20561952 20562041 -156412099 - L1MC4 LINE L1 -1339 6703 6615 246 289 0 0 chrX 20562040 20562130 -156412010 + L1MC4 LINE L1 6614 6703 -1339 * 251 322 0 0 chrX 20562126 20562216 -156411924 - L1MC4 LINE L1 -1339 6703 6614 232 260 0 62 chrX 20562160 20562256 -156411884 + L1MC4 LINE L1 6614 6703 -1339 * 569 260 0 11 chrX 20562297 20562478 -156411662 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 1730 132 7 30 chrX 20562583 20562878 -156411262 + AluSx SINE Alu 1 288 -24 183 80 0 0 chrX 20563383 20563408 -156410732 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2169 88 0 3 chrX 20563837 20564121 -156410019 - AluSq SINE Alu -30 283 1 5209 163 33 1 chrX 20564712 20565066 -156409074 - L1PB3 LINE L1 0 6154 5813 293 0 27 0 chrX 20565066 20565103 -156409037 + (TG)n Simple_repeat Simple_repeat 2 39 0 5209 163 33 1 chrX 20565103 20566070 -156408070 - L1PB3 LINE L1 -341 5813 4793 2598 75 119 5 chrX 20566442 20566844 -156407296 - LTR7 LTR ERV1 -2 448 1 3342 57 9 7 chrX 20567433 20567875 -156406265 - LTR7 LTR ERV1 -7 443 1 287 310 50 66 chrX 20568042 20568284 -156405856 + MLT1L LTR MaLR 1 238 -377 183 42 0 0 chrX 20568818 20568842 -156405298 + (A)n Simple_repeat Simple_repeat 1 24 0 360 324 58 79 chrX 20569388 20569487 -156404653 - MIR SINE MIR -6 256 156 2264 92 0 16 chrX 20569487 20569804 -156404336 - AluSx SINE Alu 0 312 1 360 324 58 79 chrX 20569804 20569945 -156404195 - MIR SINE MIR -106 156 21 2090 130 3 0 chrX 20570432 20570740 -156403400 - AluSp SINE Alu -4 309 1 21 57 0 0 chrX 20570773 20570808 -156403332 + AT_rich Low_complexity Low_complexity 1 35 0 616 263 58 58 chrX 20571622 20571930 -156402210 - LTR33 LTR ERVL -2 519 212 4502 57 3 20 chrX 20571935 20572519 -156401621 + LTR10C LTR ERV1 11 584 -7 560 188 30 0 chrX 20573133 20573234 -156400906 + MER3 DNA MER1_type 10 113 -96 2292 94 3 13 chrX 20573235 20573542 -156400598 + AluSx SINE Alu 1 304 -8 2206 118 3 3 chrX 20574344 20574648 -156399492 + AluSq SINE Alu 1 304 -9 2600 52 0 0 chrX 20574876 20575185 -156398955 + AluY SINE Alu 1 309 -2 2287 103 0 3 chrX 20576314 20576625 -156397515 - AluSx SINE Alu -2 310 1 287 301 98 16 chrX 20576810 20576933 -156397207 + L2 LINE L2 3139 3271 -1 29 60 0 0 chrX 20577264 20577314 -156396826 + AT_rich Low_complexity Low_complexity 1 50 0 190 319 34 92 chrX 20577697 20577816 -156396324 - L2 LINE L2 -39 3233 3122 2217 102 0 3 chrX 20577975 20578301 -156395839 + AluSx SINE Alu 1 312 0 183 367 33 17 chrX 20578399 20578519 -156395621 - L2 LINE L2 -563 2751 2630 251 287 50 20 chrX 20580195 20580296 -156393844 + MIR SINE MIR 88 191 -71 313 233 11 0 chrX 20580734 20580824 -156393316 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 668 184 0 0 chrX 20581613 20581727 -156392413 - FLAM_A SINE Alu -18 124 11 2389 75 0 3 chrX 20581792 20582085 -156392055 + AluSc SINE Alu 7 298 -11 27 62 0 0 chrX 20582384 20582432 -156391708 + AT_rich Low_complexity Low_complexity 1 48 0 1092 46 0 0 chrX 20582450 20582580 -156391560 - AluY SINE Alu -15 296 167 1737 149 54 14 chrX 20582805 20583100 -156391040 + AluSx SINE Alu 1 307 -5 488 271 138 29 chrX 20583352 20583562 -156390578 - MIR SINE MIR -1 261 29 238 184 26 0 chrX 20584326 20584402 -156389738 + (TA)n Simple_repeat Simple_repeat 1 78 0 4262 71 5 13 chrX 20586228 20586873 -156387267 + LTR8 LTR ERV1 1 691 0 45315 75 23 11 chrX 20586873 20588086 -156386054 + HUERS-P1 LTR ERV1 1 1199 -5064 222 37 0 0 chrX 20588086 20588113 -156386027 + (TC)n Simple_repeat Simple_repeat 2 28 0 45315 75 23 11 chrX 20588113 20589561 -156384579 + HUERS-P1 LTR ERV1 1199 2629 -3634 2213 98 0 46 chrX 20589561 20589888 -156384252 + AluSx SINE Alu 1 312 0 45315 75 23 11 chrX 20589888 20590133 -156384007 + HUERS-P1 LTR ERV1 2629 2870 -3393 312 48 0 0 chrX 20590133 20590175 -156383965 + (TG)n Simple_repeat Simple_repeat 1 42 0 45315 75 23 11 chrX 20590175 20591838 -156382302 + HUERS-P1 LTR ERV1 2870 4513 -1750 2105 66 77 7 chrX 20591838 20592111 -156382029 + AluSp SINE Alu 1 292 -21 45315 75 23 11 chrX 20592111 20593730 -156380410 + HUERS-P1 LTR ERV1 4513 6263 0 5158 75 22 0 chrX 20593730 20594406 -156379734 + LTR8 LTR ERV1 1 691 0 281 320 20 10 chrX 20594564 20594664 -156379476 - MER81 DNA DNA -13 101 1 4303 122 6 51 chrX 20594749 20595457 -156378683 - LTR8 LTR ERV1 -15 676 1 2081 145 100 35 chrX 20595540 20595638 -156378502 - MSTC LTR MaLR -1 427 337 3735 159 26 31 chrX 20595638 20596369 -156377771 - LTR8A LTR ERV1 0 727 1 2081 145 100 35 chrX 20596369 20596671 -156377469 - MSTC LTR MaLR -91 337 1 2963 113 2 5 chrX 20596740 20597175 -156376965 - MER57B LTR ERV1 0 434 1 2193 89 0 4 chrX 20597277 20597600 -156376540 - AluSq SINE Alu 0 326 5 398 326 74 19 chrX 20597658 20597873 -156376267 + MIR SINE MIR 36 262 0 2267 121 0 0 chrX 20598704 20599017 -156375123 - AluSq SINE Alu 0 313 1 1702 117 121 15 chrX 20599710 20599983 -156374157 - AluSx SINE Alu 0 302 1 583 244 24 8 chrX 20599985 20600112 -156374028 - MIR SINE MIR -114 148 20 351 78 0 0 chrX 20600428 20600479 -156373661 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 0 0 0 chrX 20600478 20600513 -156373627 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 24 67 0 0 chrX 20600561 20600606 -156373534 + AT_rich Low_complexity Low_complexity 1 45 0 185 277 27 80 chrX 20602383 20602495 -156371645 + L2 LINE L2 2380 2485 -829 188 315 45 56 chrX 20602767 20602856 -156371284 + MER5B DNA MER1_type 1 88 -90 307 294 20 29 chrX 20602885 20602987 -156371153 - MER5A DNA MER1_type 0 189 89 2235 83 0 14 chrX 20603272 20603596 -156370544 - AluSx SINE Alu 0 320 1 210 222 0 0 chrX 20604655 20604691 -156369449 + polypyrimidine Low_complexity Low_complexity 1 36 0 2138 112 17 0 chrX 20604691 20604985 -156369155 - AluSx SINE Alu -13 299 1 2094 129 0 0 chrX 20606230 20606548 -156367592 - AluSx SINE Alu 0 318 1 235 347 35 35 chrX 20607329 20607473 -156366667 + MER5B DNA MER1_type 33 176 -2 2176 96 0 0 chrX 20608378 20608659 -156365481 + AluSx SINE Alu 1 281 -31 186 43 0 0 chrX 20608664 20608687 -156365453 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 254 270 0 0 chrX 20610180 20610243 -156363897 - MER103 DNA DNA -86 80 18 2244 102 0 13 chrX 20610298 20610602 -156363538 - AluSq SINE Alu -11 302 3 2145 180 97 5 chrX 20610680 20611124 -156363016 + MER31A LTR ERV1 1 485 0 306 115 0 0 chrX 20611746 20611798 -156362342 + (GA)n Simple_repeat Simple_repeat 1 52 0 1696 241 96 46 chrX 20612007 20612552 -156361588 + L1ME3 LINE L1 5075 5591 -571 1671 158 7 59 chrX 20612552 20612856 -156361284 + AluJb SINE Alu 1 288 -24 1696 241 96 46 chrX 20612856 20612977 -156361163 + L1ME3 LINE L1 5591 5704 -458 2314 103 0 3 chrX 20612977 20613287 -156360853 + AluSx SINE Alu 3 311 -1 1696 241 96 46 chrX 20613287 20613549 -156360591 + L1ME3 LINE L1 5704 6047 -115 255 61 0 0 chrX 20614441 20614474 -156359666 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2345 89 0 6 chrX 20614492 20614805 -156359335 + AluSq SINE Alu 1 311 -2 553 277 32 72 chrX 20615089 20615133 -156359007 - MIR SINE MIR -11 251 207 459 250 140 0 chrX 20615133 20615297 -156358843 + MER5A DNA MER1_type 3 189 0 553 277 32 72 chrX 20615297 20615501 -156358639 - MIR SINE MIR -55 207 13 617 318 165 18 chrX 20615800 20616618 -156357522 + L2 LINE L2 1739 2754 -560 207 218 0 0 chrX 20616893 20616948 -156357192 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 356 66 52 chrX 20617076 20617365 -156356775 + L2 LINE L2 2565 2857 -457 2484 74 0 6 chrX 20617602 20617914 -156356226 - AluSg SINE Alu 0 310 1 276 361 101 0 chrX 20617944 20618063 -156356077 + L2 LINE L2 3106 3236 -36 840 252 10 101 chrX 20618118 20618267 -156355873 + LTR37B LTR ERV1 17 178 -290 1232 129 9 14 chrX 20618267 20618477 -156355663 - L1MA2 LINE L1 -6 6298 6090 840 252 10 101 chrX 20618477 20618744 -156355396 + LTR37B LTR ERV1 178 395 -73 2312 96 0 3 chrX 20619282 20619584 -156354556 + AluSx SINE Alu 1 301 -11 2092 132 0 0 chrX 20619719 20620023 -156354117 + AluSx SINE Alu 1 304 -8 24 77 0 0 chrX 20621455 20621507 -156352633 + AT_rich Low_complexity Low_complexity 1 52 0 2315 87 0 13 chrX 20622512 20622822 -156351318 - AluSx SINE Alu -4 308 3 198 226 61 104 chrX 20623406 20623521 -156350619 - L2 LINE L2 -896 2418 2309 621 278 49 19 chrX 20624048 20624253 -156349887 + MIR SINE MIR 34 244 -18 200 259 74 115 chrX 20624568 20624737 -156349403 + MIR3 SINE MIR 10 173 -70 429 95 0 0 chrX 20625896 20625959 -156348181 + (TG)n Simple_repeat Simple_repeat 2 64 0 214 195 52 78 chrX 20626048 20626125 -156348015 + MIR SINE MIR 116 190 -72 2287 90 0 0 chrX 20626816 20627105 -156347035 - AluSx SINE Alu -21 291 3 238 191 0 0 chrX 20627247 20627294 -156346846 - Alu SINE Alu -253 49 3 1618 6 0 0 chrX 20627573 20627755 -156346385 + L1PA4 LINE L1 5972 6153 -2 1567 243 11 60 chrX 20630382 20630967 -156343173 - L1MCc LINE L1 -4887 1536 1014 251 235 24 71 chrX 20630962 20631047 -156343093 - L1MCc LINE L1 -5650 773 693 * 1395 275 50 7 chrX 20631208 20631652 -156342488 - L1MCc LINE L1 -5944 479 17 22 35 0 0 chrX 20631793 20631822 -156342318 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chrX 20632076 20632097 -156342043 + (GGGTG)n Simple_repeat Simple_repeat 4 24 0 2176 112 3 3 chrX 20632426 20632729 -156341411 - AluSx SINE Alu -9 303 1 273 119 0 0 chrX 20634590 20634632 -156339508 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 304 379 24 12 chrX 20634721 20634969 -156339171 + L1ME LINE L1 5487 5737 -384 25 31 0 0 chrX 20635218 20635250 -156338890 + AT_rich Low_complexity Low_complexity 1 32 0 195 69 0 0 chrX 20635288 20635317 -156338823 + (TC)n Simple_repeat Simple_repeat 2 30 0 809 302 14 0 chrX 20636502 20636724 -156337416 - MIR SINE MIR -16 246 22 370 337 19 6 chrX 20636792 20636961 -156337179 - MIR3 SINE MIR -10 198 25 287 225 337 0 chrX 20636976 20637065 -156337075 - MIR SINE MIR -108 154 36 247 280 15 30 chrX 20637277 20637409 -156336731 + (TA)n Simple_repeat Simple_repeat 1 130 0 2366 37 3 30 chrX 20637713 20638013 -156336127 - AluY SINE Alu -19 292 1 572 292 82 50 chrX 20639015 20639357 -156334783 - MLT1I LTR MaLR 0 409 57 1826 124 11 11 chrX 20639633 20639951 -156334189 - AluSg SINE Alu 0 318 1 359 344 6 55 chrX 20640149 20640312 -156333828 - LTR16C LTR ERVL -266 225 71 540 286 77 6 chrX 20641316 20641484 -156332656 - MIR SINE MIR -58 204 25 211 284 15 45 chrX 20642380 20642447 -156331693 - L2 LINE L2 -1 3271 3207 207 114 0 0 chrX 20642549 20642584 -156331556 + (TG)n Simple_repeat Simple_repeat 2 36 0 275 369 40 13 chrX 20643181 20643330 -156330810 + L2 LINE L2 2910 3062 -210 1954 195 40 42 chrX 20643550 20644052 -156330088 - MLT1D LTR MaLR -2 503 3 311 295 32 0 chrX 20644118 20644213 -156329927 - L2 LINE L2 -1 3271 3174 2293 45 72 0 chrX 20644736 20645026 -156329114 - AluY SINE Alu 0 311 1 1593 193 0 20 chrX 20645221 20645516 -156328624 + AluJo SINE Alu 1 289 -23 208 380 141 0 chrX 20645870 20646146 -156327994 + L2 LINE L2 2995 3309 -4 22 0 0 0 chrX 20647382 20647404 -156326736 + AT_rich Low_complexity Low_complexity 1 22 0 257 314 70 0 chrX 20648105 20648191 -156325949 + MER91C DNA MER1_type 14 105 -35 30 45 0 0 chrX 20648496 20648540 -156325600 + AT_rich Low_complexity Low_complexity 1 44 0 24 32 0 0 chrX 20649614 20649645 -156324495 + AT_rich Low_complexity Low_complexity 1 31 0 201 289 89 22 chrX 20650038 20650128 -156324012 - L2 LINE L2 -18 3295 3200 1990 127 0 0 chrX 20650405 20650688 -156323452 - AluSx SINE Alu -29 283 1 21 0 0 0 chrX 20653452 20653473 -156320667 + AT_rich Low_complexity Low_complexity 1 21 0 4949 88 0 0 chrX 20654532 20655192 -156318948 - PABL_A LTR ERV1 0 660 1 5055 75 7 1 chrX 20655396 20656074 -156318066 - L1PA13 LINE L1 0 6163 5482 309 197 0 0 chrX 20657210 20657276 -156316864 + (CA)n Simple_repeat Simple_repeat 2 67 0 1831 144 49 3 chrX 20658191 20658517 -156315623 - MER47A DNA MER2_type 0 366 26 292 372 101 65 chrX 20659378 20659776 -156314364 - L2 LINE L2 -7 3265 2854 925 219 0 0 chrX 20660077 20660241 -156313899 - MER5A DNA MER1_type -23 166 3 1053 191 40 4 chrX 20660451 20660676 -156313464 - MER46A DNA MER2_type -2 234 2 246 270 22 0 chrX 20660691 20660780 -156313360 - L1MC4 LINE L1 -1337 6705 6615 233 255 0 0 chrX 20660781 20660832 -156313308 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 218 0 0 chrX 20660833 20660888 -156313252 - L1MC4 LINE L1 -1339 6703 6649 230 226 19 17 chrX 20660884 20660989 -156313151 - L1MCa LINE L1 -1337 6985 1995 * 253 246 0 75 chrX 20660905 20661039 -156313101 + L1MC4 LINE L1 6614 6703 -1339 6197 96 14 2 chrX 20711080 20712434 -156261706 + L1PA13 LINE L1 4798 6161 -2 183 174 109 22 chrX 20713063 20713109 -156261031 + L3 LINE CR1 577 626 -951 2217 117 7 0 chrX 20713813 20714122 -156260018 - AluSx SINE Alu -1 311 1 2178 121 0 0 chrX 20714543 20714850 -156259290 + AluSg SINE Alu 1 307 -3 23 33 0 0 chrX 20715210 20715240 -156258900 + AT_rich Low_complexity Low_complexity 1 30 0 240 286 33 33 chrX 20716056 20716147 -156257993 + L2 LINE L2 3182 3272 0 606 280 90 53 chrX 20716522 20716759 -156257381 + MIR SINE MIR 5 261 -1 240 111 0 0 chrX 20716768 20716804 -156257336 + (CTA)n Simple_repeat Simple_repeat 3 38 0 736 87 9 9 chrX 20717553 20717668 -156256472 + (TCTA)n Simple_repeat Simple_repeat 1 115 0 417 39 0 0 chrX 20717676 20717727 -156256413 + (TG)n Simple_repeat Simple_repeat 2 52 0 327 25 0 0 chrX 20718825 20718865 -156255275 + (TG)n Simple_repeat Simple_repeat 2 41 0 639 270 6 6 chrX 20720011 20720189 -156253951 - MER5B DNA MER1_type 0 178 1 312 276 50 44 chrX 20720682 20720863 -156253277 + L1ME LINE L1 2927 3108 -3038 288 361 54 31 chrX 20721016 20721534 -156252606 + L1ME LINE L1 3691 4220 -1926 25 31 0 0 chrX 20721628 20721660 -156252480 + AT_rich Low_complexity Low_complexity 1 32 0 2242 87 0 3 chrX 20722069 20722367 -156251773 + AluSx SINE Alu 1 297 -15 1317 212 38 7 chrX 20722810 20723103 -156251037 + L1PB4 LINE L1 5852 6153 -3 313 307 83 19 chrX 20723230 20723435 -156250705 + L1ME LINE L1 5568 5785 -2023 26 0 0 0 chrX 20723583 20723609 -156250531 + AT_rich Low_complexity Low_complexity 1 26 0 228 279 116 6 chrX 20723800 20723972 -156250168 - HAL1 LINE L1 -90 2417 2227 2346 101 0 0 chrX 20724403 20724709 -156249431 - AluSx SINE Alu -1 311 6 410 264 22 0 chrX 20725130 20725221 -156248919 - LTR28 LTR ERV1 -11 1009 917 5413 152 17 5 chrX 20725227 20726543 -156247597 - L1PA16 LINE L1 -78 6088 4758 1490 147 24 0 chrX 20726569 20726821 -156247319 - L1MA9 LINE L1 -32 6280 6023 * 1875 204 74 4 chrX 20726817 20727279 -156246861 - L1 LINE L1 -1371 4775 4282 1673 234 5 13 chrX 20727281 20727678 -156246462 - MER45B DNA AcHobo -242 798 405 320 245 20 59 chrX 20727689 20727791 -156246349 - L1MC4 LINE L1 -1337 6705 6608 541 294 94 0 chrX 20728848 20729008 -156245132 - MER5B DNA MER1_type 0 178 4 255 103 0 0 chrX 20729267 20729306 -156244834 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 344 289 134 53 chrX 20729541 20729825 -156244315 + LTR33 LTR ERVL 47 353 -168 2285 84 3 3 chrX 20730563 20730861 -156243279 + AluSp SINE Alu 1 298 -15 226 314 20 0 chrX 20731423 20731525 -156242615 + L1ME LINE L1 5769 5872 -298 644 218 61 87 chrX 20731525 20731697 -156242443 - MER58A DNA MER1_type -2197 223 57 2272 27 0 0 chrX 20731697 20731956 -156242184 + AluY SINE Alu 1 259 -52 644 218 61 87 chrX 20731956 20732012 -156242128 - MER58A DNA MER1_type -2363 57 1 794 234 94 15 chrX 20732491 20732692 -156241448 - AluJo SINE Alu -90 222 6 275 370 15 7 chrX 20734993 20735128 -156239012 + MER102b DNA MER1_type 196 331 -10 207 179 36 36 chrX 20735857 20735941 -156238199 + (TATAA)n Simple_repeat Simple_repeat 5 88 0 181 95 24 24 chrX 20735958 20736000 -156238140 + (TATAA)n Simple_repeat Simple_repeat 3 44 0 185 261 23 154 chrX 20736191 20736321 -156237819 - L2 LINE L2 -235 3037 2925 180 0 0 0 chrX 20736569 20736589 -156237551 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2154 151 0 8 chrX 20736643 20737000 -156237140 + MER47A DNA MER2_type 2 355 -11 3218 58 0 7 chrX 20737000 20737415 -156236725 + L1PA7 LINE L1 5743 6154 0 186 43 0 0 chrX 20737530 20737553 -156236587 + (GA)n Simple_repeat Simple_repeat 1 23 0 336 265 69 57 chrX 20737758 20738003 -156236137 + L2 LINE L2 2294 2541 -773 33 43 0 0 chrX 20738855 20738902 -156235238 + AT_rich Low_complexity Low_complexity 1 47 0 622 129 5 5 chrX 20739434 20739619 -156234521 + AluSp SINE Alu 41 313 0 218 189 0 0 chrX 20739688 20739725 -156234415 - L2 LINE L2 -12 3301 3265 193 377 26 26 chrX 20739933 20740047 -156234093 - MIR SINE MIR -13 249 136 3470 129 24 44 chrX 20740070 20740205 -156233935 - L1MA8 LINE L1 -6 6285 6149 2059 119 0 7 chrX 20740205 20740507 -156233633 - AluSx SINE Alu -12 300 1 3470 129 24 44 chrX 20740507 20741051 -156233089 - L1MA8 LINE L1 -142 6149 5620 261 0 0 0 chrX 20741800 20741829 -156232311 + (A)n Simple_repeat Simple_repeat 1 29 0 1704 166 20 17 chrX 20742426 20742727 -156231413 - AluJo SINE Alu -8 304 3 29 0 0 0 chrX 20743219 20743248 -156230892 + AT_rich Low_complexity Low_complexity 1 29 0 2076 122 16 3 chrX 20743389 20743692 -156230448 - AluSx SINE Alu -1 311 5 1829 137 62 16 chrX 20744212 20744533 -156229607 + MER1B DNA MER1_type 1 336 -1 318 215 0 0 chrX 20745087 20745166 -156228974 + (TGGA)n Simple_repeat Simple_repeat 3 81 0 559 270 52 35 chrX 20745439 20745669 -156228471 - L1MC/D LINE L1 -2250 5558 5325 576 331 35 51 chrX 20746015 20746329 -156227811 + L2 LINE L2 3005 3313 0 262 288 0 14 chrX 20746429 20746502 -156227638 + GA-rich Low_complexity Low_complexity 3 74 0 275 363 0 34 chrX 20747936 20748082 -156226058 + L2 LINE L2 2944 3084 -188 1674 153 14 4 chrX 20748326 20748601 -156225539 + AluJb SINE Alu 3 280 -32 21 0 0 0 chrX 20748719 20748740 -156225400 + AT_rich Low_complexity Low_complexity 1 21 0 934 122 20 36 chrX 20749582 20749621 -156224519 - L1MA4 LINE L1 -12 6288 6250 1625 162 54 40 chrX 20749621 20749991 -156224149 - THE1C LTR MaLR 0 375 1 934 122 20 36 chrX 20749991 20750147 -156223993 - L1MA4 LINE L1 -50 6250 6096 23 33 0 0 chrX 20750574 20750604 -156223536 + AT_rich Low_complexity Low_complexity 1 30 0 530 160 47 47 chrX 20751566 20751716 -156222424 - MER96B DNA MER1_type? -44 373 224 693 289 0 21 chrX 20751919 20752106 -156222034 + MIR SINE MIR 2 184 -78 300 268 6 116 chrX 20752230 20752394 -156221746 - L1ME LINE L1 -348 5822 5677 800 329 55 7 chrX 20752891 20753201 -156220939 - LTR16C LTR ERVL 0 491 167 222 37 0 0 chrX 20753947 20753974 -156220166 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 764 230 92 29 chrX 20754260 20754499 -156219641 - L1ME3A LINE L1 -214 5956 5703 324 273 111 81 chrX 20754542 20754813 -156219327 + LTR33A LTR ERVL 5 283 -240 278 130 0 19 chrX 20754866 20754920 -156219220 + (TCC)n Simple_repeat Simple_repeat 2 54 0 * 291 140 0 0 chrX 20754911 20754961 -156219179 + (TC)n Simple_repeat Simple_repeat 2 51 0 325 316 74 16 chrX 20754965 20755155 -156218985 + LTR33A LTR ERVL 321 521 -2 527 303 52 9 chrX 20755156 20755387 -156218753 - L1ME3A LINE L1 -551 5611 5371 2077 101 0 44 chrX 20756234 20756550 -156217590 + AluSg SINE Alu 1 302 -8 207 0 0 0 chrX 20757801 20757824 -156216316 + (T)n Simple_repeat Simple_repeat 1 23 0 527 318 101 22 chrX 20760166 20760497 -156213643 + L2 LINE L2 2592 2954 -360 2440 136 44 7 chrX 20760497 20760910 -156213230 - MSTA LTR MaLR 0 428 1 527 318 101 22 chrX 20760910 20760936 -156213204 + L2 LINE L2 2954 2977 -337 201 152 0 0 chrX 20760968 20761001 -156213139 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 293 327 138 44 chrX 20761001 20761032 -156213108 - L2 LINE L2 0 3313 3286 927 258 5 14 chrX 20761032 20761253 -156212887 + MER20 DNA MER1_type 1 219 0 293 327 138 44 chrX 20761253 20761518 -156212622 - L2 LINE L2 -27 3286 2989 2311 90 3 7 chrX 20762099 20762400 -156211740 + AluSx SINE Alu 1 300 -12 436 256 74 2 chrX 20762636 20762788 -156211352 + L1ME3A LINE L1 5996 6164 -2 507 275 116 0 chrX 20762970 20763108 -156211032 - MIR SINE MIR -107 155 2 452 288 0 23 chrX 20763333 20763493 -156210647 + MER5B DNA MER1_type 36 178 0 2195 88 41 0 chrX 20763805 20764100 -156210040 - AluSx SINE Alu -5 307 1 432 37 0 0 chrX 20764775 20764829 -156209311 + (TG)n Simple_repeat Simple_repeat 1 54 0 30 45 0 0 chrX 20765827 20765871 -156208269 + AT_rich Low_complexity Low_complexity 1 44 0 1407 223 0 17 chrX 20766330 20766626 -156207514 + AluJo SINE Alu 1 291 -21 2492 71 0 3 chrX 20767271 20767581 -156206559 - AluSc SINE Alu 0 309 1 440 294 13 13 chrX 20767787 20767940 -156206200 - Charlie8 DNA MER1_type -2163 254 102 306 303 11 0 chrX 20767985 20768074 -156206066 + L2 LINE L2 3223 3312 -1 1157 181 75 97 chrX 20768213 20768627 -156205513 + MER66A LTR ERV1 97 478 0 297 253 21 21 chrX 20769590 20769685 -156204455 + CT-rich Low_complexity Low_complexity 4 98 0 288 0 0 0 chrX 20771098 20771130 -156203010 + (CA)n Simple_repeat Simple_repeat 2 33 0 1607 208 35 14 chrX 20771730 20772096 -156202044 + MLT1A2 LTR MaLR 1 374 0 1662 206 21 12 chrX 20772191 20772526 -156201614 + LTR32 LTR ERVL 7 344 -127 861 224 6 6 chrX 20772572 20772751 -156201389 + LTR32 LTR ERVL 293 471 0 234 350 60 8 chrX 20773543 20773660 -156200480 - MIR SINE MIR -94 168 46 2076 104 23 16 chrX 20774283 20774591 -156199549 + AluSq SINE Alu 1 310 -3 321 146 0 0 chrX 20774642 20774690 -156199450 - MER5B DNA MER1_type -126 52 5 217 250 138 12 chrX 20775299 20775379 -156198761 - MIR SINE MIR -108 154 65 684 166 183 33 chrX 20775822 20776063 -156198077 - Charlie5 DNA MER1_type 0 2624 2348 642 211 21 31 chrX 20776061 20776255 -156197885 - Charlie5 DNA MER1_type -2416 196 5 * 1171 181 127 70 chrX 20777084 20777510 -156196630 - LTR7 LTR ERV1 0 450 1 21 0 0 0 chrX 20778043 20778064 -156196076 + AT_rich Low_complexity Low_complexity 1 21 0 2464 156 46 4 chrX 20778099 20778599 -156195541 - L1MA8 LINE L1 -427 5864 5344 1587 57 13 35 chrX 20778608 20778836 -156195304 + L1PA8 LINE L1 5949 6171 -1 1153 158 85 88 chrX 20778906 20779199 -156194941 - L1MA8 LINE L1 -796 5350 5057 2263 101 7 0 chrX 20779199 20779497 -156194643 - AluSg SINE Alu 0 310 11 1153 158 85 88 chrX 20779497 20779601 -156194539 - L1MA8 LINE L1 -1089 5057 4954 2483 78 0 0 chrX 20779601 20779909 -156194231 - AluY SINE Alu -3 308 1 2440 55 0 0 chrX 20780283 20780573 -156193567 - AluY SINE Alu -21 290 1 26 0 0 0 chrX 20780626 20780652 -156193488 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chrX 20781125 20781147 -156192993 + (T)n Simple_repeat Simple_repeat 1 22 0 363 258 107 103 chrX 20782324 20782576 -156191564 + MIR SINE MIR 3 255 -7 2601 58 0 0 chrX 20783123 20783432 -156190708 - AluY SINE Alu -2 309 1 21 0 0 0 chrX 20783654 20783675 -156190465 + AT_rich Low_complexity Low_complexity 1 21 0 1273 264 193 15 chrX 20784541 20785214 -156188926 - LTR50 LTR ERVL 0 795 3 2323 99 3 0 chrX 20786008 20786312 -156187828 - AluSp SINE Alu -8 305 1 182 418 25 0 chrX 20786596 20786718 -156187422 - L2 LINE L2 -1 3271 3147 2131 133 0 0 chrX 20787939 20788247 -156185893 - AluSg SINE Alu -2 308 1 2345 57 3 13 chrX 20788583 20788881 -156185259 - AluY SINE Alu -16 295 1 517 330 56 28 chrX 20788943 20789326 -156184814 - LTR16A1 LTR ERVL 0 457 86 354 304 103 79 chrX 20790685 20791356 -156182784 - L2 LINE L2 -778 2536 1850 188 200 18 0 chrX 20791372 20791427 -156182713 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 1959 281 18 14 chrX 20791852 20792403 -156181737 - MLT1H1 LTR MaLR -2 553 1 325 288 75 0 chrX 20792896 20792976 -156181164 + MER5A DNA MER1_type 9 94 -95 367 322 48 14 chrX 20793330 20793476 -156180664 - MIR3 SINE MIR -4 204 54 269 274 0 16 chrX 20793526 20793588 -156180552 + MER5A DNA MER1_type 126 186 -3 304 277 160 29 chrX 20794056 20794294 -156179846 + L2 LINE L2 2631 2899 -415 185 314 0 0 chrX 20794685 20794736 -156179404 - L2 LINE L2 -2552 762 712 6255 135 56 49 chrX 20795917 20797256 -156176884 - L1P LINE L1 -896 5250 3903 3675 248 42 46 chrX 20797252 20799035 -156175105 - L1P3 LINE L1 -4687 1764 10 * 1989 124 0 7 chrX 20799941 20800223 -156173917 + AluSg SINE Alu 1 280 -30 25 31 0 0 chrX 20800502 20800534 -156173606 + AT_rich Low_complexity Low_complexity 1 32 0 1258 286 56 54 chrX 20800595 20801133 -156173007 - MLT1H LTR MaLR -8 541 3 180 324 134 22 chrX 20801384 20801563 -156172577 + L2 LINE L2 2810 3008 -264 425 216 72 9 chrX 20802627 20802738 -156171402 + MIR SINE MIR 32 149 -113 372 77 0 0 chrX 20803385 20803437 -156170703 + (TG)n Simple_repeat Simple_repeat 2 53 0 2070 131 24 0 chrX 20803449 20803740 -156170400 - AluSx SINE Alu -14 298 1 1992 101 35 10 chrX 20803937 20804225 -156169915 + AluSg SINE Alu 1 295 -15 610 280 125 21 chrX 20805120 20805488 -156168652 + LTR33 LTR ERVL 2 473 -48 274 268 28 0 chrX 20805587 20805658 -156168482 - MIR SINE MIR -14 248 176 512 276 100 18 chrX 20805796 20805966 -156168174 - MIR SINE MIR -64 198 15 680 259 38 9 chrX 20806126 20806338 -156167802 + L1ME3A LINE L1 5944 6161 -9 22 0 0 0 chrX 20807425 20807447 -156166693 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 20807463 20807513 -156166627 + (TG)n Simple_repeat Simple_repeat 1 50 0 1966 132 0 0 chrX 20807516 20807789 -156166351 - AluSx SINE Alu -39 273 1 457 292 60 19 chrX 20807868 20808084 -156166056 - MIR SINE MIR -6 256 32 2178 115 0 0 chrX 20808349 20808636 -156165504 + AluSc SINE Alu 3 289 -20 5279 162 34 10 chrX 20809745 20809885 -156164255 - L1MA3 LINE L1 -9 7715 7580 2391 74 0 0 chrX 20809885 20810181 -156163959 - AluY SINE Alu -15 296 1 5279 162 34 10 chrX 20810181 20811595 -156162545 - L1MA3 LINE L1 -144 7580 6122 3357 187 56 1 chrX 20811590 20812337 -156161803 - L1MA3 LINE L1 -1932 5633 4846 * 3668 178 99 16 chrX 20812335 20813166 -156160974 - L1MA3 LINE L1 -3033 4532 3771 180 0 0 0 chrX 20813166 20813186 -156160954 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3668 178 99 16 chrX 20813186 20814034 -156160106 - L1MA3 LINE L1 -3794 3771 2701 7918 181 20 9 chrX 20814039 20815510 -156158630 - L1MA3 LINE L1 -6067 1498 13 187 353 134 8 chrX 20816039 20816158 -156157982 + L2 LINE L2 3139 3272 0 22 0 0 0 chrX 20816972 20816994 -156157146 + AT_rich Low_complexity Low_complexity 1 22 0 201 133 0 0 chrX 20817963 20817993 -156156147 + (CA)n Simple_repeat Simple_repeat 1 30 0 1719 154 14 4 chrX 20819941 20820220 -156153920 - AluSx SINE Alu 0 312 31 216 0 0 0 chrX 20820227 20820251 -156153889 + (T)n Simple_repeat Simple_repeat 1 24 0 278 281 185 45 chrX 20820685 20820863 -156153277 + MIR SINE MIR 52 254 -8 250 341 0 0 chrX 20820849 20820937 -156153203 - MIR SINE MIR -10 252 165 * 477 316 20 13 chrX 20821129 20821281 -156152859 - MIR SINE MIR -105 157 5 2376 96 0 6 chrX 20822497 20822850 -156151290 - AluSx SINE Alu 0 353 3 2144 96 7 3 chrX 20823868 20824160 -156149980 + AluSx SINE Alu 1 293 -19 1042 138 36 25 chrX 20824167 20824363 -156149777 + L1PA15 LINE L1 5775 5972 -193 727 246 78 30 chrX 20824364 20824553 -156149587 - LTR43 LTR ERV1 -190 412 205 183 42 0 0 chrX 20824553 20824577 -156149563 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 727 246 78 30 chrX 20824577 20824655 -156149485 - LTR43 LTR ERV1 -397 205 132 306 147 29 29 chrX 20824805 20824873 -156149267 - LTR60 LTR ERV1 -516 70 3 307 254 30 22 chrX 20824876 20825010 -156149130 + L1ME3A LINE L1 5025 5159 -987 * 677 319 93 19 chrX 20825008 20825710 -156148430 - L1M4 LINE L1 -866 5280 4527 1704 273 106 22 chrX 20825768 20826533 -156147607 + L1ME3A LINE L1 5335 6163 -7 1962 108 43 0 chrX 20826966 20827244 -156146896 + AluSc SINE Alu 1 290 -19 2714 81 30 0 chrX 20827953 20828322 -156145818 - L1PA7 LINE L1 -416 5738 5359 2916 70 30 2 chrX 20828322 20828712 -156145428 + L1PA7 LINE L1 5741 6150 -4 621 340 90 38 chrX 20829305 20829705 -156144435 - LTR33 LTR ERVL -13 508 88 1993 123 3 0 chrX 20830643 20830936 -156143204 + AluSx SINE Alu 1 294 -18 190 326 77 0 chrX 20832782 20832890 -156141250 + MIR SINE MIR 41 157 -65 189 74 0 0 chrX 20834524 20834551 -156139589 + (AAATG)n Simple_repeat Simple_repeat 3 29 0 460 30 15 15 chrX 20835258 20835325 -156138815 + (CA)n Simple_repeat Simple_repeat 1 67 0 651 317 116 29 chrX 20837338 20837900 -156136240 + L1MC/D LINE L1 3122 3732 -2414 253 342 65 18 chrX 20837960 20838296 -156135844 + L1MC/D LINE L1 5258 5609 -2199 549 225 0 0 chrX 20838297 20838448 -156135692 + (TA)n Simple_repeat Simple_repeat 1 151 0 198 0 0 0 chrX 20838501 20838523 -156135617 + (TG)n Simple_repeat Simple_repeat 2 23 0 3776 126 28 16 chrX 20838628 20839014 -156135126 + L1PA15 LINE L1 5534 5931 -234 2367 63 7 7 chrX 20839014 20839314 -156134826 + AluSp SINE Alu 1 300 -13 3776 126 28 16 chrX 20839314 20839545 -156134595 + L1PA15 LINE L1 5931 6158 -7 288 229 14 0 chrX 20839819 20839889 -156134251 + MER58A DNA MER1_type 46 116 0 265 130 19 0 chrX 20839942 20839996 -156134144 - L1MB4 LINE L1 0 6180 6126 * 4718 165 36 21 chrX 20839994 20840959 -156133181 - L1MA8 LINE L1 0 6291 5308 2607 171 33 6 chrX 20840964 20841483 -156132657 - L1MB4 LINE L1 -36 6144 5612 263 278 183 0 chrX 20841853 20841968 -156132172 + L2 LINE L2 3178 3313 0 206 118 0 0 chrX 20842049 20842083 -156132057 + (ATG)n Simple_repeat Simple_repeat 1 34 0 4177 208 20 21 chrX 20842103 20843003 -156131137 - L1MD2 LINE L1 -92 6267 5369 302 254 28 0 chrX 20844284 20844426 -156129714 + (TA)n Simple_repeat Simple_repeat 1 146 0 201 175 0 0 chrX 20844578 20844618 -156129522 + (TA)n Simple_repeat Simple_repeat 1 40 0 936 266 63 0 chrX 20845075 20845346 -156128794 - L1MB7 LINE L1 -77 6107 5820 2540 41 0 13 chrX 20845369 20845684 -156128456 - AluY SINE Alu 0 311 1 534 287 205 4 chrX 20846030 20846298 -156127842 - MER5C DNA MER1_type 0 324 3 2461 56 0 10 chrX 20846525 20846829 -156127311 - AluY SINE Alu -10 301 1 195 42 0 0 chrX 20847114 20847138 -156127002 + (T)n Simple_repeat Simple_repeat 1 24 0 959 304 58 37 chrX 20847888 20848322 -156125818 - LTR16A LTR ERVL -5 445 3 21 36 0 0 chrX 20849439 20849467 -156124673 + AT_rich Low_complexity Low_complexity 1 28 0 257 197 99 28 chrX 20849859 20849930 -156124210 - MIR SINE MIR -135 127 52 300 230 10 50 chrX 20851350 20851450 -156122690 - L1MC4 LINE L1 -1333 6709 6614 * 308 231 0 66 chrX 20851434 20851525 -156122615 + L1MC4 LINE L1 6648 6732 -1310 342 257 109 22 chrX 20853134 20853317 -156120823 - HAL1b LINE L1 -396 952 754 507 349 115 0 chrX 20853399 20853591 -156120549 - MIR SINE MIR 0 262 49 22 56 0 0 chrX 20853742 20853778 -156120362 + AT_rich Low_complexity Low_complexity 1 36 0 227 320 49 90 chrX 20853798 20853920 -156120220 - MIR3 SINE MIR -26 182 66 27 0 0 0 chrX 20854142 20854169 -156119971 + AT_rich Low_complexity Low_complexity 1 27 0 2017 121 0 0 chrX 20854347 20854636 -156119504 - AluSx SINE Alu -23 289 1 219 150 0 0 chrX 20854686 20854726 -156119414 + (T)n Simple_repeat Simple_repeat 1 40 0 580 212 85 146 chrX 20855407 20855648 -156118492 - L2 LINE L2 -13 3300 3087 1398 177 21 42 chrX 20855648 20855936 -156118204 - AluJo SINE Alu -30 282 1 580 212 85 146 chrX 20855936 20856057 -156118083 - L2 LINE L2 -226 3087 2960 1498 281 121 35 chrX 20856098 20856720 -156117420 - L2 LINE L2 -455 2859 2185 317 108 0 62 chrX 20856781 20856846 -156117294 - L1MA9 LINE L1 0 6312 6252 1419 165 0 125 chrX 20856855 20857183 -156116957 - AluJb SINE Alu -11 291 5 1280 165 0 17 chrX 20909458 20909688 -156064452 + AluJb SINE Alu 76 301 -11 900 209 0 68 chrX 20910998 20911233 -156062907 - MER20 DNA MER1_type 0 219 1 23 33 0 0 chrX 20912152 20912182 -156061958 + AT_rich Low_complexity Low_complexity 1 30 0 2154 123 0 3 chrX 20912286 20912594 -156061546 - AluSc SINE Alu 0 309 3 1849 199 40 86 chrX 20913160 20913683 -156060457 + MLT1D LTR MaLR 7 505 0 193 279 0 0 chrX 20913692 20913735 -156060405 + L2 LINE L2 3183 3225 -88 240 181 64 21 chrX 20914236 20914330 -156059810 + (TA)n Simple_repeat Simple_repeat 1 98 0 235 216 68 0 chrX 20914337 20914411 -156059729 + L1MC4 LINE L1 6625 6703 -1339 890 236 10 10 chrX 20914414 20914613 -156059527 + MLT1D LTR MaLR 307 505 0 21 0 0 0 chrX 20915941 20915962 -156058178 + AT_rich Low_complexity Low_complexity 1 21 0 227 161 0 36 chrX 20916402 20916458 -156057682 - L1ME LINE L1 -260 5861 5808 251 191 16 16 chrX 20916534 20916597 -156057543 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 27 29 0 0 chrX 20917045 20917079 -156057061 + AT_rich Low_complexity Low_complexity 1 34 0 2173 98 3 7 chrX 20917705 20918002 -156056138 + AluSq SINE Alu 1 296 -17 1705 198 27 0 chrX 20918167 20918501 -156055639 - MER2 DNA MER2_type -1 343 1 185 322 107 33 chrX 20919179 20919300 -156054840 - MIR SINE MIR -25 237 108 267 262 19 16 chrX 20919303 20919414 -156054726 - MIR SINE MIR -78 130 19 183 80 0 0 chrX 20919758 20919783 -156054357 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 231 291 69 11 chrX 20919895 20920070 -156054070 + L1MEc LINE L1 1017 1201 -5195 5799 167 18 14 chrX 20920546 20920907 -156053233 - L1PB1 LINE L1 -1 6150 5792 216 67 0 0 chrX 20920907 20920937 -156053203 + (CA)n Simple_repeat Simple_repeat 2 31 0 5799 167 18 14 chrX 20920937 20922634 -156051506 - L1PB1 LINE L1 -359 5792 4093 203 305 0 0 chrX 20924173 20924232 -156049908 + GA-rich Low_complexity Low_complexity 3 61 0 528 248 43 7 chrX 20924519 20924660 -156049480 + MER33 DNA MER1_type 1 146 -178 397 150 110 20 chrX 20924693 20924793 -156049347 + MER33 DNA MER1_type 215 323 -1 2411 180 17 19 chrX 20925842 20926359 -156047781 - L1MA7 LINE L1 0 6291 5776 602 190 30 10 chrX 20926419 20926575 -156047565 - L1MC/D LINE L1 -545 5789 5693 * 1850 143 21 13 chrX 20926574 20927052 -156047088 + L1M2 LINE L1 5110 5591 -700 255 61 0 0 chrX 20927071 20927104 -156047036 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 315 34 0 chrX 20927105 20927303 -156046837 + (TATG)n Simple_repeat Simple_repeat 1 204 0 256 264 22 22 chrX 20927311 20927402 -156046738 - L1MC4 LINE L1 -1338 6704 6614 47 19 0 0 chrX 20927649 20927703 -156046437 + AT_rich Low_complexity Low_complexity 1 54 0 328 369 131 24 chrX 20927965 20928602 -156045538 + L2 LINE L2 2552 3264 -8 1694 190 4 1 chrX 20928999 20929338 -156044802 - L1MB8 LINE L1 -173 6005 5667 441 0 0 0 chrX 20929843 20929892 -156044248 + (TA)n Simple_repeat Simple_repeat 2 50 0 225 0 0 0 chrX 20930550 20930575 -156043565 + (A)n Simple_repeat Simple_repeat 1 25 0 441 244 26 6 chrX 20932253 20932409 -156041731 + (TA)n Simple_repeat Simple_repeat 2 160 0 2208 107 13 3 chrX 20932473 20932783 -156041357 - AluSq SINE Alu 0 313 1 463 216 0 10 chrX 20932811 20932908 -156041232 - MER94 DNA DNA -34 100 5 835 199 74 61 chrX 20932917 20933214 -156040926 + MER33 DNA MER1_type 21 321 -3 5915 32 1 0 chrX 20933214 20933939 -156040201 + L1P LINE L1 4612 5337 -809 213 347 50 33 chrX 20935658 20935779 -156038361 + L2 LINE L2 2942 3064 -249 911 213 72 61 chrX 20935958 20936403 -156037737 + MLT1B LTR MaLR 1 390 0 265 160 20 0 chrX 20936706 20936756 -156037384 + L1PA14 LINE L1 5860 5910 -251 295 186 157 0 chrX 20937163 20937233 -156036907 + LTR33 LTR ERVL 9 89 -432 29 60 0 0 chrX 20938499 20938549 -156035591 + AT_rich Low_complexity Low_complexity 1 50 0 2202 71 4 0 chrX 20938800 20939081 -156035059 + AluY SINE Alu 1 282 -29 620 317 53 28 chrX 20941156 20941399 -156032741 + MIR SINE MIR 3 254 -8 634 171 0 0 chrX 20941626 20941737 -156032403 + FRAM SINE Alu 57 167 -9 23 33 0 0 chrX 20942442 20942472 -156031668 + AT_rich Low_complexity Low_complexity 1 30 0 25 90 0 0 chrX 20944686 20944753 -156029387 + AT_rich Low_complexity Low_complexity 1 67 0 205 255 20 0 chrX 20947008 20947059 -156027081 - L2 LINE L2 -10 3303 3252 746 207 9 68 chrX 20949599 20949821 -156024319 + MER3 DNA MER1_type 1 209 0 1260 198 0 30 chrX 20949861 20950129 -156024011 + AluJo SINE Alu 21 280 -32 2027 92 33 43 chrX 20950294 20950598 -156023542 - AluSg SINE Alu -9 301 1 1083 239 19 0 chrX 20950640 20950903 -156023237 + L1MC1 LINE L1 4706 4973 -1173 2264 101 0 10 chrX 20951083 20951391 -156022749 + AluSx SINE Alu 1 305 -7 931 150 140 10 chrX 20951447 20951647 -156022493 + L1PA16 LINE L1 5941 6166 0 5882 178 23 22 chrX 20951747 20953101 -156021039 + L1MC1 LINE L1 4981 6331 -2 403 125 28 14 chrX 20954351 20954423 -156019717 - MIR SINE MIR -84 178 106 280 348 36 22 chrX 20954561 20954699 -156019441 - MIR3 SINE MIR -65 143 4 330 289 72 102 chrX 20954898 20955203 -156018937 + L3 LINE CR1 944 1239 -338 353 291 71 8 chrX 20955249 20955376 -156018764 + MIR SINE MIR 57 191 -71 2439 70 0 0 chrX 20955551 20955851 -156018289 - AluY SINE Alu -11 300 1 736 289 50 15 chrX 20956311 20956571 -156017569 + L2 LINE L2 1870 2138 -1176 939 298 148 24 chrX 20956572 20957336 -156016804 + L2 LINE L2 2421 3292 -21 223 235 0 20 chrX 20957713 20957764 -156016376 + (TA)n Simple_repeat Simple_repeat 1 50 0 206 350 0 0 chrX 20957916 20957976 -156016164 + L2 LINE L2 1842 1901 -1413 2280 84 3 7 chrX 20957978 20958288 -156015852 + AluSc SINE Alu 1 309 0 662 357 157 28 chrX 20959377 20959422 -156014718 - L2 LINE L2 -517 2797 2759 2285 242 26 8 chrX 20959422 20960025 -156014115 - MER90 LTR ERV1 0 614 1 662 357 157 28 chrX 20960025 20960739 -156013401 - L2 LINE L2 -555 2759 1940 180 0 0 0 chrX 20960972 20960992 -156013148 + (A)n Simple_repeat Simple_repeat 1 20 0 2466 21 7 0 chrX 20961199 20961484 -156012656 + AluY SINE Alu 2 288 -23 375 266 288 14 chrX 20962449 20962588 -156011552 - MER5A DNA MER1_type -3 186 10 225 94 0 0 chrX 20964367 20964399 -156009741 + (CTATT)n Simple_repeat Simple_repeat 2 33 0 459 322 44 44 chrX 20965074 20965301 -156008839 - L3 LINE CR1 -38 1539 1313 545 278 78 32 chrX 20965349 20965706 -156008434 + MLT1H1 LTR MaLR 152 546 -9 234 0 0 0 chrX 20965736 20965762 -156008378 + (T)n Simple_repeat Simple_repeat 1 26 0 1110 162 18 49 chrX 20965825 20966111 -156008029 + L1MA8 LINE L1 5718 6005 -179 375 315 70 64 chrX 20966223 20966550 -156007590 - L3 LINE CR1 -474 1103 775 187 323 43 11 chrX 20966612 20966705 -156007435 - MIR SINE MIR -74 188 93 198 325 77 0 chrX 20966865 20966982 -156007158 - L3 LINE CR1 -820 757 632 1071 298 60 22 chrX 20967172 20967538 -156006602 + LTR16C LTR ERVL 112 491 0 271 385 53 15 chrX 20967637 20967902 -156006238 + L2 LINE L2 1333 1607 -1707 975 118 0 0 chrX 20967909 20968045 -156006095 - AluSc SINE Alu -18 291 156 1038 347 77 31 chrX 20968045 20968514 -156005626 + L2 LINE L2 1969 2415 -899 1713 192 40 0 chrX 20968514 20968863 -156005277 + MLT1A1 LTR MaLR 2 364 -1 1038 347 77 31 chrX 20968863 20969091 -156005049 + L2 LINE L2 2415 2631 -683 740 202 40 0 chrX 20969091 20969264 -156004876 - L1MA4 LINE L1 -4 6296 6117 1038 347 77 31 chrX 20969264 20969407 -156004733 + L2 LINE L2 2631 2849 -465 3702 147 58 7 chrX 20969878 20970551 -156003589 + MER39 LTR ERV1 1 707 0 2531 30 0 7 chrX 20970664 20970964 -156003176 - AluY SINE Alu -13 298 1 222 200 67 0 chrX 20971064 20971109 -156003031 - L2 LINE L2 -9 3263 3216 2202 114 0 0 chrX 20974757 20975055 -155999085 + AluSx SINE Alu 1 298 -14 2762 123 68 70 chrX 20975228 20975637 -155998503 + MER4B LTR ERV1 1 410 -200 2312 82 0 19 chrX 20975637 20975952 -155998188 - AluY SINE Alu 0 311 3 2762 123 68 70 chrX 20975952 20976103 -155998037 + MER4B LTR ERV1 410 560 -50 1009 110 34 0 chrX 20976109 20976255 -155997885 - AluSg/x SINE Alu -1 311 161 380 125 0 0 chrX 20976255 20976311 -155997829 + MER4A LTR ERV1 609 664 0 554 345 15 15 chrX 20979168 20979374 -155994766 + MIR SINE MIR 30 235 -27 968 262 0 0 chrX 20979614 20979820 -155994320 + MER58A DNA MER1_type 3 208 -16 1628 221 11 32 chrX 20980805 20980965 -155993175 - MLT1A2 LTR MaLR -2 372 210 1781 175 92 25 chrX 20980965 20981366 -155992774 + MSTA LTR MaLR 1 428 0 1628 221 11 32 chrX 20981366 20981581 -155992559 - MLT1A2 LTR MaLR -164 210 5 192 371 56 0 chrX 20981875 20981964 -155992176 - MIR SINE MIR -65 143 50 1021 268 70 68 chrX 20981978 20982489 -155991651 + LTR33A LTR ERVL 1 512 -11 213 345 84 92 chrX 20982517 20982705 -155991435 - L2 LINE L2 -7 3265 3077 2089 125 0 0 chrX 20982705 20983009 -155991131 + AluSc SINE Alu 1 304 -5 213 345 84 92 chrX 20983009 20983223 -155990917 - L2 LINE L2 -195 3077 2866 222 167 0 24 chrX 20983417 20983459 -155990681 - MER5C DNA MER1_type -248 76 36 557 349 135 25 chrX 20983562 20984416 -155989724 - L2 LINE L2 -565 2749 1802 2284 125 58 23 chrX 20984879 20985312 -155988828 + LTR7 LTR ERV1 1 448 -2 591 205 0 10 chrX 20985388 20985534 -155988606 + MER5A DNA MER1_type 4 189 0 601 237 69 0 chrX 20985552 20985725 -155988415 - MER5A DNA MER1_type -4 185 1 186 43 0 0 chrX 20985890 20985913 -155988227 + (T)n Simple_repeat Simple_repeat 1 23 0 210 171 98 0 chrX 20986057 20986098 -155988042 + MIR SINE MIR 95 139 -123 181 268 36 18 chrX 20987331 20987387 -155986753 - L2 LINE L2 0 3272 3216 183 162 0 0 chrX 20987973 20988010 -155986130 + (CACCAT)n Simple_repeat Simple_repeat 2 38 0 312 258 189 97 chrX 20988116 20988282 -155985858 - MIR SINE MIR -6 256 64 1634 143 0 4 chrX 20988282 20988548 -155985592 + L1PA15 LINE L1 5901 6165 0 312 258 189 97 chrX 20988548 20988598 -155985542 - MIR SINE MIR -198 64 20 2135 98 0 14 chrX 20988875 20989170 -155984970 + AluSg1 SINE Alu 1 291 -18 449 261 39 8 chrX 20989555 20989685 -155984455 + MER94 DNA DNA 1 134 0 251 345 26 26 chrX 20989792 20989908 -155984232 + MIR SINE MIR 147 262 0 1648 207 24 3 chrX 20990521 20990855 -155983285 - MER58B DNA MER1_type 0 341 1 205 161 0 0 chrX 20991567 20991598 -155982542 + polypurine Low_complexity Low_complexity 2 32 0 23 54 0 0 chrX 20992511 20992548 -155981592 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chrX 20993780 20993813 -155980327 + AT_rich Low_complexity Low_complexity 1 33 0 252 373 34 52 chrX 20994482 20994750 -155979390 - L3 LINE CR1 -124 1453 1191 200 359 67 26 chrX 20995666 20995861 -155978279 - L3 LINE CR1 -1034 543 341 331 315 30 80 chrX 20995885 20996055 -155978085 + MIR SINE MIR 13 173 -89 761 221 35 0 chrX 20996055 20996227 -155977913 + MER45A DNA AcHobo 1 178 0 331 315 30 80 chrX 20996227 20996256 -155977884 + MIR SINE MIR 173 202 -60 1521 151 74 0 chrX 20996697 20996955 -155977185 - MER7A DNA MER2_type -1 335 59 8786 219 19 11 chrX 20996956 20999114 -155975026 + L1PA15 LINE L1 2730 4904 -1242 5372 127 20 6 chrX 20999115 21000306 -155973834 + L1PA15 LINE L1 4953 6157 -8 482 217 0 0 chrX 21000307 21000390 -155973750 - MER7A DNA MER2_type -265 81 1 817 146 169 6 chrX 21000458 21000636 -155973504 + MSTA LTR MaLR 1 207 -221 607 235 48 6 chrX 21000640 21000806 -155973334 + L1P4 LINE L1 759 931 -6650 * 6764 167 42 8 chrX 21000803 21001530 -155972610 + L1P4 LINE L1 4363 5063 -2521 243 0 0 0 chrX 21001530 21001557 -155972583 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1054 109 6 11 chrX 21001563 21001737 -155972403 + (GAAA)n Simple_repeat Simple_repeat 4 176 0 6764 167 42 8 chrX 21001737 21002295 -155971845 + L1P4 LINE L1 5067 5700 -1884 3834 117 19 1 chrX 21002297 21003351 -155970789 + L1P4 LINE L1 6167 7243 -369 467 218 0 0 chrX 21003356 21003443 -155970697 + MSTA LTR MaLR 340 426 -2 301 171 57 34 chrX 21003786 21003874 -155970266 - MIR SINE MIR -44 218 129 242 162 40 14 chrX 21004627 21004709 -155969431 + (TTAA)n Simple_repeat Simple_repeat 1 84 0 2309 109 0 6 chrX 21005669 21005981 -155968159 - AluSx SINE Alu 0 312 3 22 35 0 0 chrX 21006119 21006148 -155967992 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 21006917 21006940 -155967200 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chrX 21007129 21007162 -155966978 + AT_rich Low_complexity Low_complexity 1 33 0 4762 106 25 0 chrX 21007181 21007873 -155966267 - L1PA10 LINE L1 -16 6152 5444 2907 207 16 65 chrX 21007890 21008741 -155965399 + L1PA12 LINE L1 2585 3394 -4190 2221 111 0 10 chrX 21009789 21010095 -155964045 + AluY SINE Alu 1 303 -8 1207 148 5 0 chrX 21010588 21010791 -155963349 - L1PA14 LINE L1 0 6161 5958 414 338 15 8 chrX 21010812 21010945 -155963195 + MER5A DNA MER1_type 55 188 -1 22 0 0 0 chrX 21011810 21011832 -155962308 + AT_rich Low_complexity Low_complexity 1 22 0 324 319 188 0 chrX 21011988 21012126 -155962014 + MIR3 SINE MIR 36 199 -9 223 279 148 16 chrX 21012836 21012958 -155961182 + L3 LINE CR1 1216 1353 -224 1988 134 7 3 chrX 21014129 21014427 -155959713 - AluSx SINE Alu -13 299 1 2025 118 3 0 chrX 21014966 21015253 -155958887 + AluSg SINE Alu 9 296 -14 905 216 22 0 chrX 21016156 21016341 -155957799 - MER5A DNA MER1_type 0 189 1 543 298 37 0 chrX 21017684 21017845 -155956295 + MLT1G1 LTR MaLR 3 169 -426 212 365 143 33 chrX 21018089 21018607 -155955533 + L2 LINE L2 1955 2529 -785 21 0 0 0 chrX 21019281 21019302 -155954838 + AT_rich Low_complexity Low_complexity 1 21 0 2417 157 17 20 chrX 21019452 21019859 -155954281 + MSTB LTR MaLR 1 406 -20 2136 117 0 3 chrX 21021630 21021928 -155952212 - AluSq SINE Alu -16 297 1 529 209 0 11 chrX 21022869 21022960 -155951180 - Tigger7 DNA MER2_type -1 2586 2497 2882 173 29 4 chrX 21022962 21023454 -155950686 - Tigger7 DNA MER2_type -214 519 16 270 0 0 0 chrX 21023454 21023484 -155950656 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 1592 193 17 64 chrX 21023715 21024124 -155950016 + MLT1B LTR MaLR 1 390 0 290 367 74 37 chrX 21024311 21024581 -155949559 - L3b LINE CR1 -8 1575 1296 439 195 78 39 chrX 21026097 21026225 -155947915 - MIR SINE MIR -124 138 6 429 306 35 46 chrX 21027116 21027289 -155946851 + MIR SINE MIR 41 211 -51 1971 135 3 0 chrX 21027558 21027854 -155946286 - AluSx SINE Alu -13 299 3 410 322 75 23 chrX 21028024 21028238 -155945902 - Charlie8 DNA MER1_type -2143 274 50 26 30 0 0 chrX 21028377 21028410 -155945730 + AT_rich Low_complexity Low_complexity 1 33 0 1339 295 72 46 chrX 21028440 21029443 -155944697 + L1ME3A LINE L1 3636 4611 -1535 2252 193 64 6 chrX 21029443 21029929 -155944211 + MER67D LTR ERV1 1 514 0 1339 295 72 46 chrX 21029929 21029944 -155944196 + L1ME3A LINE L1 4611 4624 -1522 2026 126 0 10 chrX 21029944 21030237 -155943903 + AluSq SINE Alu 1 290 -23 1339 295 72 46 chrX 21030237 21030426 -155943714 + L1ME3A LINE L1 4624 4902 -1244 1786 271 66 26 chrX 21030793 21031656 -155942484 + L1ME3A LINE L1 5258 6164 -6 1986 108 59 15 chrX 21031685 21032089 -155942051 + L1MA4A LINE L1 5749 6295 -8 2520 61 3 0 chrX 21032150 21032460 -155941680 + AluY SINE Alu 1 311 0 603 257 17 0 chrX 21032705 21032880 -155941260 - MER3 DNA MER1_type 0 2411 2234 419 243 0 18 chrX 21032890 21033001 -155941139 - MER3 DNA MER1_type -61 148 40 235 263 20 10 chrX 21033169 21033268 -155940872 + (TA)n Simple_repeat Simple_repeat 2 101 0 299 341 82 2 chrX 21033450 21033574 -155940566 + MIR SINE MIR 20 153 -55 23 33 0 0 chrX 21033603 21033633 -155940507 + AT_rich Low_complexity Low_complexity 1 30 0 442 313 44 19 chrX 21034360 21034520 -155939620 - L3 LINE CR1 -23 1554 1391 624 294 77 17 chrX 21034536 21034771 -155939369 - MIR SINE MIR 0 262 14 253 347 128 30 chrX 21035309 21035779 -155938361 - L2 LINE L2 -557 2757 2242 269 321 174 11 chrX 21035932 21036116 -155938024 - L3 LINE CR1 -436 1141 928 315 246 0 0 chrX 21036159 21036285 -155937855 + (TA)n Simple_repeat Simple_repeat 1 126 0 1935 197 20 101 chrX 21037087 21037656 -155936484 + MLT2B3 LTR ERVL 1 520 -34 228 67 0 0 chrX 21037656 21037686 -155936454 + (TCCA)n Simple_repeat Simple_repeat 1 30 0 1935 197 20 101 chrX 21037686 21037719 -155936421 + MLT2B3 LTR ERVL 520 554 0 673 174 0 9 chrX 21037780 21037889 -155936251 - FLAM_C SINE Alu -35 108 1 8418 166 103 22 chrX 21038322 21039945 -155934195 + MER52A LTR ERV1 1 1755 0 227 320 27 13 chrX 21040352 21040427 -155933713 + L2 LINE L2 3229 3304 -9 22 56 0 0 chrX 21040505 21040541 -155933599 + AT_rich Low_complexity Low_complexity 1 36 0 471 305 224 30 chrX 21042860 21043267 -155930873 + L2 LINE L2 1564 2071 -1243 2146 126 0 7 chrX 21043267 21043577 -155930563 - AluSx SINE Alu -4 308 1 471 305 224 30 chrX 21043577 21043628 -155930512 + L2 LINE L2 2071 2111 -1203 526 313 212 14 chrX 21043628 21044138 -155930002 + L2 LINE L2 2707 3310 -3 203 161 0 0 chrX 21046450 21046481 -155927659 + (CATA)n Simple_repeat Simple_repeat 3 33 0 375 60 0 0 chrX 21047305 21047355 -155926785 + (CA)n Simple_repeat Simple_repeat 1 50 0 501 370 45 0 chrX 21048367 21048610 -155925530 + MIR SINE MIR 1 254 -8 195 306 57 16 chrX 21049615 21049739 -155924401 + MIR SINE MIR 26 154 -108 10831 197 28 45 chrX 21049750 21052300 -155921840 + L1MA5A LINE L1 2642 5236 -1061 191 61 30 0 chrX 21052300 21052333 -155921807 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 10831 197 28 45 chrX 21052333 21052633 -155921507 + L1MA5A LINE L1 5236 5540 -757 2815 117 36 11 chrX 21052633 21053102 -155921038 - L1MA2 LINE L1 -8 6296 5816 10831 197 28 45 chrX 21053102 21053755 -155920385 + L1MA5A LINE L1 5540 6025 -272 1994 185 3 3 chrX 21053506 21053868 -155920272 + L1PB4 LINE L1 5782 6143 -13 * 27 0 0 0 chrX 21054922 21054949 -155919191 + AT_rich Low_complexity Low_complexity 1 27 0 189 314 0 0 chrX 21055427 21055478 -155918662 - L2 LINE L2 -3 3269 3219 201 121 0 0 chrX 21056266 21056299 -155917841 + (GAATG)n Simple_repeat Simple_repeat 1 33 0 267 308 85 15 chrX 21056303 21056433 -155917707 - L3b LINE CR1 -66 1517 1379 22 0 0 0 chrX 21057924 21057946 -155916194 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 21058207 21058228 -155915912 + AT_rich Low_complexity Low_complexity 1 21 0 297 371 45 0 chrX 21058591 21058723 -155915417 - MIR3 SINE MIR -27 181 44 654 310 52 15 chrX 21058737 21059094 -155915046 - LTR16C LTR ERVL 0 491 84 1096 104 121 0 chrX 21059117 21059290 -155914850 - MER30 DNA MER1_type -36 194 1 629 167 218 6 chrX 21059834 21059990 -155914150 - MER53 DNA DNA 0 189 1 746 240 102 41 chrX 21060544 21060871 -155913269 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chrX 21060895 21060916 -155913224 + AT_rich Low_complexity Low_complexity 1 21 0 728 289 88 34 chrX 21061512 21061973 -155912167 + MLT1H LTR MaLR 1 537 -12 4125 195 83 50 chrX 21062436 21063641 -155910499 - L1MC2 LINE L1 -11 7754 6161 450 248 10 0 chrX 21063716 21063817 -155910323 + ERVL LTR ERVL 4928 5029 -735 2696 186 26 17 chrX 21064060 21064761 -155909379 + L1MA8 LINE L1 4750 5453 -743 4149 116 20 2 chrX 21064761 21065398 -155908742 + L1PA13 LINE L1 5508 6156 -7 315 188 25 25 chrX 21065440 21065520 -155908620 + L1MA8 LINE L1 5439 5518 -816 3578 169 38 20 chrX 21065563 21066321 -155907819 + L1MA8 LINE L1 5514 6285 -6 794 292 116 32 chrX 21066421 21066859 -155907281 - LTR33 LTR ERVL -18 503 29 196 344 78 47 chrX 21067659 21067787 -155906353 - L2 LINE L2 -4 3268 3137 784 154 0 22 chrX 21068219 21068355 -155905785 - FLAM_C SINE Alu 0 133 1 746 172 14 115 chrX 21068525 21068734 -155905406 + MER5A DNA MER1_type 2 189 0 231 212 0 197 chrX 21069370 21069502 -155904638 + MER102a DNA MER1_type 225 330 0 381 255 57 9 chrX 21069543 21069649 -155904491 - MER5A DNA MER1_type -69 120 10 1882 151 7 3 chrX 21070259 21070557 -155903583 - AluJo SINE Alu -13 299 1 588 238 152 0 chrX 21071264 21071428 -155902712 - MER5A DNA MER1_type 0 189 1 2159 117 3 0 chrX 21071622 21071921 -155902219 + AluSg SINE Alu 1 300 -10 655 226 38 52 chrX 21071946 21072158 -155901982 + MER3 DNA MER1_type 1 209 0 2082 121 13 7 chrX 21072919 21073224 -155900916 + AluSx SINE Alu 1 307 -5 1079 78 20 0 chrX 21073401 21073554 -155900586 + L1PA6 LINE L1 5999 6154 0 590 253 19 26 chrX 21073712 21073866 -155900274 + MER5B DNA MER1_type 26 178 0 21 0 0 0 chrX 21073874 21073895 -155900245 + GC_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chrX 21074168 21074203 -155899937 + AT_rich Low_complexity Low_complexity 1 35 0 306 293 153 7 chrX 21074236 21074386 -155899754 - MIR SINE MIR -89 173 2 21 0 0 0 chrX 21074451 21074472 -155899668 + AT_rich Low_complexity Low_complexity 1 21 0 2733 119 12 64 chrX 21074631 21075150 -155898990 - L1MA3 LINE L1 -1 6304 5813 10819 177 58 14 chrX 21075150 21078208 -155895932 - L1 LINE L1 -2899 4666 1470 2441 168 24 2 chrX 21078208 21078624 -155895516 - MSTA LTR MaLR 0 428 4 8483 174 38 24 chrX 21078633 21079794 -155894346 - MSTA-int LTR MaLR -7 1644 453 478 82 0 0 chrX 21079794 21079867 -155894273 + L1PA8 LINE L1 6096 6168 -4 8483 174 38 24 chrX 21079867 21080327 -155893813 - MSTA-int LTR MaLR -1198 453 1 2515 144 51 7 chrX 21080327 21080737 -155893403 - MSTA LTR MaLR 0 428 1 8472 177 25 3 chrX 21080739 21082165 -155891975 - L1 LINE L1 -6093 1472 16 2251 90 6 16 chrX 21083442 21083754 -155890386 + AluY SINE Alu 1 309 -2 341 206 0 0 chrX 21083995 21084058 -155890082 + L2 LINE L2 3251 3313 0 610 102 10 20 chrX 21084180 21084278 -155889862 - THE1C-int LTR MaLR -1483 97 1 2426 89 77 3 chrX 21084278 21084627 -155889513 - THE1C LTR MaLR 0 375 1 551 199 177 14 chrX 21085153 21085294 -155888846 - MER5A DNA MER1_type 0 189 26 650 198 0 24 chrX 21086648 21086774 -155887366 + FLAM_C SINE Alu 1 123 -20 52 50 0 0 chrX 21086774 21086854 -155887286 + AT_rich Low_complexity Low_complexity 1 80 0 580 324 121 41 chrX 21087422 21088108 -155886032 + L2 LINE L2 2562 3301 -12 284 102 20 0 chrX 21088119 21088168 -155885972 + (TA)n Simple_repeat Simple_repeat 2 51 0 488 138 0 0 chrX 21088208 21088288 -155885852 + MADE1 DNA Mariner 1 80 0 535 280 23 45 chrX 21091223 21091482 -155882658 - LTR16A1 LTR ERVL 0 457 232 2379 234 55 8 chrX 21093812 21094325 -155879815 + MER45B DNA AcHobo 3 539 -501 440 233 113 13 chrX 21094328 21094478 -155879662 + MIR SINE MIR 84 248 -14 331 262 134 12 chrX 21095101 21095273 -155878867 - MER112 DNA MER1_type -1 259 67 2322 64 3 22 chrX 21096003 21096314 -155877826 + AluY SINE Alu 1 305 -6 23 0 0 0 chrX 21096505 21096528 -155877612 + AT_rich Low_complexity Low_complexity 1 23 0 569 245 50 7 chrX 21096533 21096672 -155877468 + MIR SINE MIR 74 218 -44 518 309 118 5 chrX 21097577 21097797 -155876343 - MIR SINE MIR -8 254 10 21 0 0 0 chrX 21097847 21097868 -155876272 + AT_rich Low_complexity Low_complexity 1 21 0 2197 115 0 0 chrX 21097869 21098173 -155875967 - AluSq SINE Alu -9 304 1 719 116 0 0 chrX 21098410 21098522 -155875618 + L1MA1 LINE L1 6191 6302 0 23966 45 9 1 chrX 21098873 21102707 -155871433 - L1PA5 LINE L1 -7 6147 2314 569 275 121 41 chrX 21102747 21103085 -155871055 + MLT1J LTR MaLR 3 367 -144 215 242 15 15 chrX 21103667 21103733 -155870407 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 261 0 0 0 chrX 21103742 21103771 -155870369 + (TG)n Simple_repeat Simple_repeat 2 30 0 756 247 9 55 chrX 21105082 21105301 -155868839 - MER58A DNA MER1_type -15 209 1 980 238 134 18 chrX 21107176 21107630 -155866510 - Charlie7 DNA MER1_type -622 1990 1484 366 289 56 0 chrX 21107805 21107947 -155866193 - Charlie7 DNA MER1_type -2459 153 4 574 254 94 10 chrX 21108020 21108221 -155865919 - MIR SINE MIR -17 245 28 31 26 0 0 chrX 21108292 21108330 -155865810 + AT_rich Low_complexity Low_complexity 1 38 0 24 77 0 0 chrX 21110126 21110178 -155863962 + AT_rich Low_complexity Low_complexity 1 52 0 1767 297 131 31 chrX 21110315 21110969 -155863171 - L2 LINE L2 -9 3304 2717 2621 43 0 0 chrX 21110969 21111271 -155862869 - AluY SINE Alu -9 302 1 1767 297 131 31 chrX 21111271 21111746 -155862394 - L2 LINE L2 -596 2717 2003 206 333 0 0 chrX 21111813 21111867 -155862273 + L2 LINE L2 3215 3268 -4 323 294 48 27 chrX 21112051 21112197 -155861943 + MIR SINE MIR 113 261 -1 212 349 113 9 chrX 21112281 21112387 -155861753 - L2 LINE L2 -35 3237 3121 601 234 0 0 chrX 21112467 21112591 -155861549 + MER110 LTR ERV1 366 489 -2 252 282 90 0 chrX 21112611 21112689 -155861451 - L2 LINE L2 -602 2712 2628 1905 248 65 24 chrX 21112904 21113654 -155860486 - L1P3 LINE L1 -5298 1700 1 1986 124 0 7 chrX 21114550 21114832 -155859308 + AluSg SINE Alu 1 280 -30 25 31 0 0 chrX 21115111 21115143 -155858997 + AT_rich Low_complexity Low_complexity 1 32 0 1425 286 56 54 chrX 21115204 21115742 -155858398 - MLT1H LTR MaLR -8 541 3 425 216 72 9 chrX 21117236 21117347 -155856793 + MIR SINE MIR 32 149 -113 372 77 0 0 chrX 21117994 21118046 -155856094 + (TG)n Simple_repeat Simple_repeat 2 53 0 2051 131 24 0 chrX 21118058 21118349 -155855791 - AluSx SINE Alu -14 298 1 1981 101 35 10 chrX 21118546 21118834 -155855306 + AluSg SINE Alu 1 295 -15 664 280 125 21 chrX 21119729 21120097 -155854043 + LTR33 LTR ERVL 2 473 -48 278 268 28 0 chrX 21120196 21120267 -155853873 - MIR SINE MIR -14 248 176 509 276 100 18 chrX 21120405 21120575 -155853565 - MIR SINE MIR -64 198 15 746 264 37 9 chrX 21120731 21120947 -155853193 + L1ME3A LINE L1 5940 6161 -9 22 0 0 0 chrX 21122034 21122056 -155852084 + AT_rich Low_complexity Low_complexity 1 22 0 450 0 0 0 chrX 21122072 21122122 -155852018 + (TG)n Simple_repeat Simple_repeat 1 50 0 1957 132 0 0 chrX 21122125 21122398 -155851742 - AluSx SINE Alu -39 273 1 452 292 60 19 chrX 21122477 21122693 -155851447 - MIR SINE MIR -6 256 32 2166 115 0 0 chrX 21122958 21123245 -155850895 + AluSc SINE Alu 3 289 -20 5598 162 34 10 chrX 21124354 21124494 -155849646 - L1MA3 LINE L1 -9 7715 7580 2388 74 0 0 chrX 21124494 21124790 -155849350 - AluY SINE Alu -15 296 1 5598 162 34 10 chrX 21124790 21126204 -155847936 - L1MA3 LINE L1 -144 7580 6122 3575 187 56 1 chrX 21126199 21126946 -155847194 - L1MA3 LINE L1 -1932 5633 4846 * 3929 178 99 16 chrX 21126944 21127775 -155846365 - L1MA3 LINE L1 -3033 4532 3771 180 0 0 0 chrX 21127775 21127795 -155846345 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3929 178 99 16 chrX 21127795 21128643 -155845497 - L1MA3 LINE L1 -3794 3771 2701 8452 181 20 9 chrX 21128648 21130119 -155844021 - L1MA3 LINE L1 -6067 1498 13 188 353 134 8 chrX 21130648 21130767 -155843373 + L2 LINE L2 3139 3272 0 22 0 0 0 chrX 21131581 21131603 -155842537 + AT_rich Low_complexity Low_complexity 1 22 0 201 133 0 0 chrX 21132572 21132602 -155841538 + (CA)n Simple_repeat Simple_repeat 1 30 0 1690 144 15 4 chrX 21134565 21134829 -155839311 - AluSx SINE Alu -15 297 31 216 0 0 0 chrX 21134836 21134860 -155839280 + (T)n Simple_repeat Simple_repeat 1 24 0 277 281 185 45 chrX 21135294 21135472 -155838668 + MIR SINE MIR 52 254 -8 251 341 0 0 chrX 21135458 21135546 -155838594 - MIR SINE MIR -10 252 165 * 477 316 20 13 chrX 21135738 21135890 -155838250 - MIR SINE MIR -105 157 5 2357 96 0 6 chrX 21137106 21137459 -155836681 - AluSx SINE Alu 0 353 3 2137 96 7 3 chrX 21138477 21138769 -155835371 + AluSx SINE Alu 1 293 -19 1105 138 36 25 chrX 21138776 21138972 -155835168 + L1PA15 LINE L1 5775 5972 -193 735 246 78 30 chrX 21138973 21139162 -155834978 - LTR43 LTR ERV1 -190 412 205 183 42 0 0 chrX 21139162 21139186 -155834954 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 735 246 78 30 chrX 21139186 21139264 -155834876 - LTR43 LTR ERV1 -397 205 132 311 147 29 29 chrX 21139414 21139482 -155834658 - LTR60 LTR ERV1 -516 70 3 301 250 30 23 chrX 21139485 21139617 -155834523 + L1ME3A LINE L1 5025 5157 -989 611 319 93 19 chrX 21139617 21140319 -155833821 - L1M4 LINE L1 -866 5280 4527 1656 273 106 22 chrX 21140377 21141142 -155832998 + L1ME3A LINE L1 5335 6163 -7 1992 108 43 0 chrX 21141575 21141853 -155832287 + AluSc SINE Alu 1 290 -19 2710 81 30 0 chrX 21142562 21142931 -155831209 - L1PA7 LINE L1 -416 5738 5359 2934 70 30 2 chrX 21142931 21143321 -155830819 + L1PA7 LINE L1 5741 6150 -4 619 340 90 38 chrX 21143914 21144314 -155829826 - LTR33 LTR ERVL -13 508 88 2027 123 3 0 chrX 21145252 21145545 -155828595 + AluSx SINE Alu 1 294 -18 186 326 77 0 chrX 21147391 21147499 -155826641 + MIR SINE MIR 41 157 -65 189 74 0 0 chrX 21149133 21149160 -155824980 + (AAATG)n Simple_repeat Simple_repeat 3 29 0 460 30 15 15 chrX 21149867 21149934 -155824206 + (CA)n Simple_repeat Simple_repeat 1 67 0 644 322 108 21 chrX 21151947 21152509 -155821631 + L1 LINE L1 3122 3732 -2414 290 167 31 52 chrX 21152569 21152665 -155821475 + L1M LINE L1 5258 5351 -2457 612 224 0 0 chrX 21152892 21153057 -155821083 + (TA)n Simple_repeat Simple_repeat 1 165 0 198 0 0 0 chrX 21153110 21153132 -155821008 + (TG)n Simple_repeat Simple_repeat 2 23 0 3784 126 28 16 chrX 21153237 21153623 -155820517 + L1PA15 LINE L1 5534 5931 -234 2404 63 7 7 chrX 21153623 21153923 -155820217 + AluSp SINE Alu 1 300 -13 3784 126 28 16 chrX 21153923 21154154 -155819986 + L1PA15 LINE L1 5931 6158 -7 282 229 14 0 chrX 21154428 21154498 -155819642 + MER58A DNA MER1_type 46 116 0 258 130 19 0 chrX 21154551 21154605 -155819535 - L1MB4 LINE L1 0 6180 6126 * 4664 165 36 21 chrX 21154603 21155568 -155818572 - L1MA8 LINE L1 0 6291 5308 2582 171 33 6 chrX 21155573 21156092 -155818048 - L1MB4 LINE L1 -36 6144 5612 259 278 183 0 chrX 21156462 21156577 -155817563 + L2 LINE L2 3178 3313 0 4143 208 20 21 chrX 21156700 21157600 -155816540 - L1MD2 LINE L1 -92 6267 5369 302 254 28 0 chrX 21158881 21159023 -155815117 + (TA)n Simple_repeat Simple_repeat 1 146 0 201 175 0 0 chrX 21159175 21159215 -155814925 + (TA)n Simple_repeat Simple_repeat 1 40 0 927 266 63 0 chrX 21159672 21159943 -155814197 - L1MB7 LINE L1 -77 6107 5820 2580 41 0 13 chrX 21159966 21160281 -155813859 - AluY SINE Alu 0 311 1 525 287 205 4 chrX 21160627 21160895 -155813245 - MER5C DNA MER1_type 0 324 3 2499 56 0 10 chrX 21161122 21161426 -155812714 - AluY SINE Alu -10 301 1 195 42 0 0 chrX 21161711 21161735 -155812405 + (T)n Simple_repeat Simple_repeat 1 24 0 978 302 58 37 chrX 21162485 21162919 -155811221 - LTR16A LTR ERVL -5 445 3 21 36 0 0 chrX 21164036 21164064 -155810076 + AT_rich Low_complexity Low_complexity 1 28 0 256 197 99 28 chrX 21164456 21164527 -155809613 - MIR SINE MIR -135 127 52 305 231 0 66 chrX 21166031 21166122 -155808018 + L1MC4 LINE L1 6648 6732 -1310 329 257 109 22 chrX 21167731 21167914 -155806226 - HAL1b LINE L1 -396 952 754 497 349 115 0 chrX 21167996 21168188 -155805952 - MIR SINE MIR 0 262 49 22 56 0 0 chrX 21168339 21168375 -155805765 + AT_rich Low_complexity Low_complexity 1 36 0 226 320 49 90 chrX 21168395 21168517 -155805623 - MIR3 SINE MIR -26 182 66 27 0 0 0 chrX 21168739 21168766 -155805374 + AT_rich Low_complexity Low_complexity 1 27 0 2055 121 0 0 chrX 21168944 21169233 -155804907 - AluSx SINE Alu -23 289 1 219 150 0 0 chrX 21169283 21169323 -155804817 + (T)n Simple_repeat Simple_repeat 1 40 0 573 212 85 146 chrX 21170004 21170245 -155803895 - L2 LINE L2 -13 3300 3087 1429 177 21 42 chrX 21170245 21170533 -155803607 - AluJo SINE Alu -30 282 1 573 212 85 146 chrX 21170533 21170654 -155803486 - L2 LINE L2 -226 3087 2960 1497 281 121 35 chrX 21170695 21171317 -155802823 - L2 LINE L2 -455 2859 2185 312 108 0 62 chrX 21171378 21171443 -155802697 - L1MA9 LINE L1 0 6312 6252 1446 165 0 125 chrX 21171452 21171780 -155802360 - AluJb SINE Alu -11 291 5 15825 114 21 36 chrX 21174235 21177489 -155796651 - L1P3 LINE L1 -2760 3701 424 18478 100 57 2 chrX 21177491 21181021 -155793119 + L1PA7 LINE L1 2515 6149 -5 25 0 0 0 chrX 21182724 21182749 -155791391 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chrX 21182937 21182972 -155791168 + AT_rich Low_complexity Low_complexity 1 35 0 782 178 6 58 chrX 21184297 21184471 -155789669 + FRAM SINE Alu 1 165 -11 11779 215 59 18 chrX 21184832 21186964 -155787176 - L1MA4A LINE L1 -1 7004 4961 2284 106 0 6 chrX 21186964 21187276 -155786864 - AluY SINE Alu -1 310 1 11779 215 59 18 chrX 21187276 21189978 -155784162 - L1MA4A LINE L1 -2044 4961 1960 7352 241 20 5 chrX 21189974 21191490 -155782650 - L1MA4A LINE L1 -5306 1543 5 * 22 70 0 0 chrX 21191570 21191613 -155782527 + AT_rich Low_complexity Low_complexity 1 43 0 498 306 88 21 chrX 21191813 21192006 -155782134 - MIR SINE MIR -37 225 20 207 313 116 27 chrX 21192014 21192161 -155781979 - MER5B DNA MER1_type -17 161 2 180 336 161 22 chrX 21193475 21193612 -155780528 + MIR SINE MIR 36 191 -71 1426 133 105 59 chrX 21193787 21194111 -155780029 + MER44D DNA MER2_type 1 609 0 321 26 0 0 chrX 21194298 21194336 -155779804 + (TC)n Simple_repeat Simple_repeat 1 38 0 315 0 0 0 chrX 21194335 21194370 -155779770 + (CA)n Simple_repeat Simple_repeat 1 35 0 * 412 259 187 6 chrX 21194644 21194810 -155779330 - MIR SINE MIR -11 251 56 324 0 0 0 chrX 21195461 21195497 -155778643 + (CA)n Simple_repeat Simple_repeat 2 37 0 1045 171 37 0 chrX 21197759 21197946 -155776194 + MER2 DNA MER2_type 6 199 -146 707 184 7 7 chrX 21197946 21198093 -155776047 - L1PA15 LINE L1 -2 6163 6017 662 199 0 30 chrX 21198211 21198572 -155775568 + (TA)n Simple_repeat Simple_repeat 1 350 0 245 256 12 0 chrX 21198558 21198640 -155775500 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 * 954 144 103 5 chrX 21198692 21198886 -155775254 - L1MA1 LINE L1 -10 6292 6080 300 232 0 0 chrX 21198886 21198942 -155775198 + MER2 DNA MER2_type 290 345 0 201 349 27 41 chrX 21198964 21199110 -155775030 + L2 LINE L2 2556 2699 -615 233 240 0 0 chrX 21199117 21199167 -155774973 + L2 LINE L2 2928 2977 -336 186 289 87 58 chrX 21200376 21200440 -155773700 + L2 LINE L2 3157 3227 -45 2152 40 0 90 chrX 21200440 21200741 -155773399 - AluY SINE Alu -4 307 34 186 289 87 58 chrX 21200741 21200780 -155773360 + L2 LINE L2 3227 3263 -9 22 0 0 0 chrX 21201645 21201667 -155772473 + AT_rich Low_complexity Low_complexity 1 22 0 1123 20 41 14 chrX 21201706 21201852 -155772288 - L1PA4 LINE L1 0 6155 6006 243 0 0 0 chrX 21201856 21201883 -155772257 + (CACCC)n Simple_repeat Simple_repeat 3 29 0 1472 12 0 6 chrX 21201891 21202063 -155772077 + L1PA5 LINE L1 5803 5973 -181 1335 256 49 28 chrX 21202638 21203131 -155771009 + MLT1D LTR MaLR 3 505 0 21 0 0 0 chrX 21203319 21203340 -155770800 + AT_rich Low_complexity Low_complexity 1 21 0 1622 161 75 33 chrX 21204836 21205196 -155768944 + THE1C LTR MaLR 1 375 0 9362 130 20 39 chrX 21205198 21206806 -155767334 + THE1C-int LTR MaLR 3 1580 0 1463 112 123 73 chrX 21206806 21207163 -155766977 + THE1C LTR MaLR 1 375 0 22 56 0 0 chrX 21207363 21207399 -155766741 + AT_rich Low_complexity Low_complexity 1 36 0 2001 139 60 58 chrX 21207865 21208298 -155765842 + L1MA4 LINE L1 5851 6284 -16 430 289 19 0 chrX 21208436 21208592 -155765548 - MER110 LTR ERV1 -26 465 307 539 269 30 0 chrX 21208968 21209102 -155765038 + MIR SINE MIR 17 154 -108 198 0 0 0 chrX 21210058 21210080 -155764060 + (TG)n Simple_repeat Simple_repeat 2 23 0 916 306 45 38 chrX 21210519 21210918 -155763222 + L2 LINE L2 2910 3311 -2 277 224 51 10 chrX 21211988 21212086 -155762054 - MLT1J1 LTR MaLR 0 446 345 1869 154 80 9 chrX 21212108 21212445 -155761695 + THE1B LTR MaLR 1 361 -3 206 305 69 30 chrX 21213848 21213979 -155760161 - MIR SINE MIR -61 201 66 898 153 77 5 chrX 21214671 21214880 -155759260 - L1MA7 LINE L1 0 6291 6068 3818 219 52 33 chrX 21214946 21216005 -155758135 + L1MB3 LINE L1 4211 5318 -865 2636 136 36 0 chrX 21216005 21216418 -155757722 - MSTA LTR MaLR 0 428 1 3818 219 52 33 chrX 21216418 21217298 -155756842 + L1MB3 LINE L1 5318 6180 -3 585 321 55 37 chrX 21218714 21219254 -155754886 + L2 LINE L2 2687 3313 0 2128 136 0 3 chrX 21219405 21219715 -155754425 - AluY SINE Alu -2 309 1 292 291 209 0 chrX 21220972 21221082 -155753058 - L2 LINE L2 -4 3268 3136 22 0 0 0 chrX 21221718 21221740 -155752400 + GC_rich Low_complexity Low_complexity 1 22 0 342 242 30 10 chrX 21222803 21222902 -155751238 - MIR SINE MIR 0 262 162 199 219 97 79 chrX 21223166 21223280 -155750860 + MIR3 SINE MIR 5 120 -88 361 320 57 49 chrX 21223353 21223600 -155750540 - LTR16C LTR ERVL -1 490 242 195 42 0 0 chrX 21223612 21223636 -155750504 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2372 118 19 16 chrX 21223779 21224142 -155749998 - THE1B LTR MaLR 0 364 1 949 194 84 28 chrX 21224273 21224536 -155749604 + L1MA8 LINE L1 6024 6296 -4 761 225 29 100 chrX 21227192 21227472 -155746668 + MIR SINE MIR 2 261 -1 412 312 100 0 chrX 21227490 21227660 -155746480 + L3 LINE CR1 627 813 -764 206 364 101 0 chrX 21227885 21228014 -155746126 + L3 LINE CR1 1002 1143 -434 215 291 18 0 chrX 21228179 21228234 -155745906 - L2 LINE L2 -8 3305 3250 2054 134 57 17 chrX 21228555 21228905 -155745235 - THE1B LTR MaLR 0 364 1 10747 119 10 1 chrX 21228905 21230470 -155743670 - THE1B-int LTR MaLR 0 1580 1 2070 148 51 14 chrX 21230470 21230821 -155743319 - THE1B LTR MaLR 0 364 1 1282 152 29 10 chrX 21230821 21231025 -155743115 - LTR28 LTR ERV1 -812 208 1 206 351 13 13 chrX 21231474 21231551 -155742589 - L2 LINE L2 -10 3262 3186 209 327 221 0 chrX 21233060 21233173 -155740967 + MIR SINE MIR 12 149 -113 2170 118 0 10 chrX 21233209 21233523 -155740617 - AluSx SINE Alu -1 311 1 1374 171 57 50 chrX 21233807 21234088 -155740052 + AluJo SINE Alu 3 285 -27 359 289 47 23 chrX 21234119 21234247 -155739893 - MER5A DNA MER1_type -50 139 9 821 177 25 91 chrX 21234390 21234453 -155739687 - MER5A DNA MER1_type -1 188 122 2931 155 26 12 chrX 21234453 21235020 -155739120 + L1MA5 LINE L1 5726 6300 0 821 177 25 91 chrX 21235020 21235154 -155738986 - MER5A DNA MER1_type -67 122 4 258 404 112 5 chrX 21236767 21237161 -155736979 - L2 LINE L2 -683 2631 2196 257 326 70 41 chrX 21237204 21237446 -155736694 - L2 LINE L2 -1265 2049 1801 186 333 61 30 chrX 21237538 21237637 -155736503 + L2 LINE L2 3156 3257 -15 1234 293 65 29 chrX 21238177 21238593 -155735547 - LTR16C LTR ERVL -56 435 5 871 181 7 0 chrX 21238599 21238754 -155735386 + MIR SINE MIR 50 205 -57 194 337 0 41 chrX 21238756 21238854 -155735286 - MIR SINE MIR -121 141 48 559 86 0 12 chrX 21239585 21239666 -155734474 + MADE1 DNA Mariner 1 80 0 568 135 21 0 chrX 21239748 21239844 -155734296 - L1MB8 LINE L1 -6 6172 6075 294 395 68 9 chrX 21240618 21240838 -155733302 + MIR SINE MIR 1 233 -29 21 95 0 0 chrX 21240957 21241020 -155733120 + AT_rich Low_complexity Low_complexity 1 63 0 734 301 68 10 chrX 21241248 21241633 -155732507 - MLT1I LTR MaLR -2 407 1 879 219 11 0 chrX 21241647 21241830 -155732310 - MER5A DNA MER1_type -4 185 1 804 299 25 0 chrX 21242333 21242534 -155731606 + MIR SINE MIR 23 228 -34 355 267 108 65 chrX 21243023 21243255 -155730885 - MIR SINE MIR -3 259 18 23 54 0 0 chrX 21244553 21244590 -155729550 + AT_rich Low_complexity Low_complexity 1 37 0 42214 41 21 1 chrX 21244654 21250685 -155723455 - L1PA3 LINE L1 0 6155 2 1308 210 7 55 chrX 21251223 21251533 -155722607 - AluJo SINE Alu -17 295 1 1314 158 8 13 chrX 21252268 21252502 -155721638 - MER46A DNA MER2_type -3 233 1 368 404 7 7 chrX 21252510 21252661 -155721479 + L2 LINE L2 3122 3272 0 231 232 0 0 chrX 21253807 21253863 -155720277 + (TA)n Simple_repeat Simple_repeat 2 57 0 294 197 47 39 chrX 21254771 21254885 -155719255 + L1MA6 LINE L1 6181 6300 0 360 384 94 14 chrX 21254912 21255399 -155718741 - L3 LINE CR1 -707 870 345 1521 136 50 50 chrX 21255587 21255926 -155718214 - L1MA2 LINE L1 0 6304 5966 1198 182 36 0 chrX 21255926 21256173 -155717967 - L1 LINE L1 -3640 2506 2251 1278 170 31 0 chrX 21257585 21257808 -155716332 - MER30 DNA MER1_type 0 230 1 933 238 46 4 chrX 21257808 21258069 -155716071 - L1MA9 LINE L1 -47 6265 5994 * 3641 218 57 16 chrX 21258053 21259044 -155715096 + L1MA9 LINE L1 3539 4569 -1577 1128 176 9 14 chrX 21259053 21259263 -155714877 + MER2 DNA MER2_type 2 210 -135 3158 226 76 9 chrX 21259363 21260496 -155713644 + L1MA9 LINE L1 4576 5833 -479 189 0 0 0 chrX 21260496 21260517 -155713623 + (CA)n Simple_repeat Simple_repeat 2 22 0 3158 226 76 9 chrX 21260517 21260780 -155713360 + L1MA9 LINE L1 5833 6077 -235 403 210 34 8 chrX 21260787 21260906 -155713234 - L1MA7 LINE L1 -5 6286 6165 29 47 0 0 chrX 21261540 21261583 -155712557 + AT_rich Low_complexity Low_complexity 1 43 0 206 219 0 0 chrX 21261585 21261626 -155712514 + (TATG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chrX 21262833 21262855 -155711285 + AT_rich Low_complexity Low_complexity 1 22 0 1914 153 153 5 chrX 21263040 21263412 -155710728 - MSTA LTR MaLR 0 428 2 8620 183 31 9 chrX 21263413 21265028 -155709112 - MSTA-int LTR MaLR 0 1651 1 1971 128 147 26 chrX 21265028 21265410 -155708730 - MSTA LTR MaLR 0 428 1 275 301 75 34 chrX 21265435 21265581 -155708559 + L1M4 LINE L1 4077 4228 -1918 682 165 0 114 chrX 21265655 21265774 -155708366 - L1MA9 LINE L1 -371 5941 5810 1768 119 46 56 chrX 21265774 21266077 -155708063 - AluSx SINE Alu -10 302 3 682 165 0 114 chrX 21266077 21266088 -155708052 - L1MA9 LINE L1 -502 5810 5799 2094 120 20 0 chrX 21266088 21266387 -155707753 - AluSc SINE Alu -4 305 1 682 165 0 114 chrX 21266387 21266431 -155707709 - L1MA9 LINE L1 -513 5799 5786 785 222 54 51 chrX 21266440 21266755 -155707385 + L1MA9 LINE L1 5959 6274 -38 2545 157 36 0 chrX 21266959 21267398 -155706742 + L1PB4 LINE L1 5688 6142 -14 2061 171 3 11 chrX 21267428 21267796 -155706344 + MER47A DNA MER2_type 2 366 0 381 340 46 34 chrX 21268074 21268312 -155705828 - LTR33 LTR ERVL -239 282 42 324 375 55 10 chrX 21269056 21269256 -155704884 + L1MC/D LINE L1 5513 5721 -2087 385 327 0 109 chrX 21269279 21269444 -155704696 + L2 LINE L2 3126 3272 0 386 355 157 0 chrX 21269528 21269700 -155704440 - MIR SINE MIR -13 249 51 203 324 0 14 chrX 21269762 21269836 -155704304 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 * 267 232 0 0 chrX 21269781 21269837 -155704303 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 203 278 153 0 chrX 21271240 21271312 -155702828 - MIR SINE MIR -133 129 47 189 167 0 0 chrX 21271343 21271373 -155702767 + MIR SINE MIR 67 96 -166 438 348 191 20 chrX 21271653 21272050 -155702090 - L2 LINE L2 0 3313 2849 238 245 0 0 chrX 21272938 21272987 -155701153 + L2 LINE L2 3265 3313 0 343 313 60 8 chrX 21273114 21273248 -155700892 - MIR SINE MIR -102 160 20 258 324 86 50 chrX 21274302 21274441 -155699699 + L2 LINE L2 3121 3264 -8 2176 95 0 3 chrX 21274492 21274775 -155699365 - AluSx SINE Alu -30 282 1 1072 133 0 61 chrX 21274988 21275184 -155698956 - AluSx SINE Alu 0 312 129 4709 30 0 14 chrX 21275187 21275760 -155698380 - L1PA5 LINE L1 0 6154 5590 1327 19 0 0 chrX 21275760 21275917 -155698223 + L1P2 LINE L1 5360 5516 -639 884 148 0 0 chrX 21275917 21276052 -155698088 - AluSx SINE Alu -177 135 1 548 250 184 0 chrX 21280386 21280538 -155693602 + MER5A DNA MER1_type 10 189 0 2534 149 42 0 chrX 21280895 21281352 -155692788 - L1MA8 LINE L1 -11 6280 5805 231 245 32 32 chrX 21282517 21282611 -155691529 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 23 0 0 0 chrX 21285808 21285831 -155688309 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrX 21286127 21286152 -155687988 + AT_rich Low_complexity Low_complexity 1 25 0 203 279 49 49 chrX 21286314 21286375 -155687765 - MIR SINE MIR -180 82 22 209 313 0 16 chrX 21286478 21286542 -155687598 - L2 LINE L2 -24 3289 3227 2187 114 7 0 chrX 21286629 21286936 -155687204 + AluSq SINE Alu 1 309 -4 1412 281 145 9 chrX 21287052 21287576 -155686564 - L2 LINE L2 -808 2506 1912 1798 161 3 0 chrX 21287844 21288129 -155686011 + AluSx SINE Alu 1 286 -26 1209 222 31 6 chrX 21288215 21288516 -155685624 - MLT1D LTR MaLR 0 505 214 473 286 60 6 chrX 21288544 21288712 -155685428 + MIR SINE MIR 68 244 -18 4583 177 29 9 chrX 21289411 21290300 -155683840 - L1MB1 LINE L1 -2 6166 5260 6683 206 75 22 chrX 21290510 21292318 -155681822 - L1MB1 LINE L1 -904 5242 3338 267 229 43 14 chrX 21292872 21292942 -155681198 + MIR SINE MIR 77 148 -114 28 48 0 0 chrX 21293583 21293625 -155680515 + AT_rich Low_complexity Low_complexity 1 42 0 950 259 191 29 chrX 21293764 21294268 -155679872 - MLT1G1 LTR MaLR -4 591 1 295 337 79 0 chrX 21294584 21294685 -155679455 - MIR SINE MIR -60 148 40 22 0 0 0 chrX 21294844 21294866 -155679274 + AT_rich Low_complexity Low_complexity 1 22 0 2137 112 3 6 chrX 21294996 21295308 -155678832 - AluSq SINE Alu -2 311 1 357 312 61 46 chrX 21296641 21297064 -155677076 + L1MC/D LINE L1 5167 5597 -755 202 274 20 0 chrX 21297310 21297361 -155676779 + (TG)n Simple_repeat Simple_repeat 2 53 0 489 34 0 0 chrX 21297528 21297587 -155676553 + (TG)n Simple_repeat Simple_repeat 2 60 0 4696 35 11 0 chrX 21297785 21298353 -155675787 - L1PA4 LINE L1 -2 6153 5580 660 358 41 13 chrX 21298578 21298894 -155675246 - MLT1I LTR MaLR -84 325 1 272 283 94 19 chrX 21299093 21299199 -155674941 + L3 LINE CR1 1392 1505 -72 713 297 146 12 chrX 21299444 21299865 -155674275 + L2 LINE L2 2732 3221 -92 237 83 0 0 chrX 21300755 21300791 -155673349 + (TG)n Simple_repeat Simple_repeat 1 36 0 2392 81 3 0 chrX 21301372 21301681 -155672459 + AluSg SINE Alu 1 310 0 238 188 60 68 chrX 21302221 21302338 -155671802 - L1 LINE L1 -2924 3222 3107 298 121 30 0 chrX 21303033 21303099 -155671041 + (CA)n Simple_repeat Simple_repeat 1 68 0 258 250 53 13 chrX 21303127 21303203 -155670937 + MIR SINE MIR 57 135 -127 2316 192 32 6 chrX 21303329 21303829 -155670311 - L1MB1 LINE L1 -11 6157 5645 677 336 32 8 chrX 21305692 21305942 -155668198 - MIR SINE MIR 0 262 7 279 133 0 0 chrX 21308511 21308556 -155665584 + (CA)n Simple_repeat Simple_repeat 2 46 0 258 257 22 73 chrX 21308628 21308764 -155665376 - MLT1K LTR MaLR -67 521 393 228 309 0 0 chrX 21309450 21309505 -155664635 - L2 LINE L2 -8 3264 3210 2058 108 3 30 chrX 21313421 21313726 -155660414 - AluSx SINE Alu -15 297 1 325 218 46 23 chrX 21314219 21314306 -155659834 + L2 LINE L2 3153 3241 -72 1243 186 22 19 chrX 21314431 21314700 -155659440 - L1MA9 LINE L1 -436 5876 5607 1449 128 13 0 chrX 21314743 21314969 -155659171 - AluSq SINE Alu -16 297 69 3259 64 7 0 chrX 21314969 21315391 -155658749 + L1PA8 LINE L1 5745 6169 -3 1875 91 0 0 chrX 21365864 21366106 -155608034 - AluY SINE Alu -1 310 69 207 0 0 0 chrX 21367020 21367043 -155607097 + (TG)n Simple_repeat Simple_repeat 2 24 0 205 309 10 41 chrX 21370275 21370372 -155603768 - L2 LINE L2 -45 3268 3175 486 217 43 0 chrX 21370426 21370541 -155603599 + L1MA8 LINE L1 6170 6289 -2 421 299 104 94 chrX 21370672 21370845 -155603295 - L2 LINE L2 -343 2971 2801 2162 112 0 19 chrX 21370845 21371158 -155602982 + AluSx SINE Alu 1 307 -5 421 299 104 94 chrX 21371158 21371762 -155602378 - L2 LINE L2 -513 2801 2186 2207 104 7 0 chrX 21373437 21373735 -155600405 + AluSg SINE Alu 1 300 -10 258 176 0 40 chrX 21374691 21374765 -155599375 - L1MA4 LINE L1 -1 6299 6229 551 116 9 62 chrX 21374858 21374970 -155599170 - L1MA4A LINE L1 -8 6295 6190 519 101 0 0 chrX 21375921 21376000 -155598140 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 7466 25 0 0 chrX 21376735 21378143 -155595997 - L1PA4 LINE L1 -1 6154 4739 9068 39 0 0 chrX 21378143 21379245 -155594895 + L1P LINE L1 3683 4784 -1362 184 299 45 15 chrX 21379659 21379726 -155594414 - MER5B DNA MER1_type -103 75 7 327 87 0 0 chrX 21381476 21381522 -155592618 - MADE1 DNA Mariner -34 46 1 207 305 12 49 chrX 21381889 21381971 -155592169 - L2 LINE L2 -36 3236 3158 386 262 86 27 chrX 21382343 21382530 -155591610 + L1MB8 LINE L1 5965 6162 -16 3077 128 31 4 chrX 21383004 21383526 -155590614 - L1MA2 LINE L1 0 6304 5769 6586 31 0 0 chrX 21383529 21384310 -155589830 - L1PA3 LINE L1 -8 6147 5367 5794 45 0 0 chrX 21384308 21385012 -155589128 + L1P LINE L1 3553 4256 -1890 * 3777 159 21 5 chrX 21384993 21386173 -155587967 - L1MA2 LINE L1 -523 5782 4585 * 22 70 0 0 chrX 21388141 21388184 -155585956 + AT_rich Low_complexity Low_complexity 1 43 0 271 234 170 0 chrX 21388286 21388380 -155585760 - MER103 DNA DNA -49 117 8 501 255 59 7 chrX 21388865 21389018 -155585122 - MER69A DNA AcHobo -15 162 2 1404 55 0 11 chrX 21389285 21389468 -155584672 - L1PA5 LINE L1 -6 6148 5968 231 244 221 16 chrX 21389752 21389879 -155584261 + MIR SINE MIR 66 218 -44 261 98 0 0 chrX 21389923 21389964 -155584176 + (T)n Simple_repeat Simple_repeat 1 41 0 188 314 118 29 chrX 21390429 21390531 -155583609 - MIR SINE MIR -105 157 47 774 263 132 63 chrX 21391800 21392305 -155581835 - MLT1G1 LTR MaLR -63 504 5 2078 118 0 3 chrX 21392306 21392623 -155581517 + AluSx SINE Alu 1 316 0 670 193 0 0 chrX 21394046 21394165 -155579975 + FLAM_C SINE Alu 1 119 -24 216 0 0 0 chrX 21394165 21394189 -155579951 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 445 162 0 0 chrX 21394488 21394556 -155579584 - AluS SINE Alu -245 68 1 21 57 0 0 chrX 21395594 21395629 -155578511 + AT_rich Low_complexity Low_complexity 1 35 0 250 283 17 0 chrX 21395786 21395846 -155578294 - MIR SINE MIR -170 92 32 21 82 0 0 chrX 21396268 21396317 -155577823 + AT_rich Low_complexity Low_complexity 1 49 0 251 320 0 0 chrX 21397484 21397559 -155576581 + (CATA)n Simple_repeat Simple_repeat 2 76 0 241 158 0 0 chrX 21397610 21397648 -155576492 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 381 323 0 24 chrX 21397893 21398020 -155576120 + L2 LINE L2 3190 3313 0 231 232 0 0 chrX 21398678 21398734 -155575406 - L1MC4 LINE L1 -1339 6703 6648 3583 177 20 4 chrX 21399252 21399948 -155574192 - L1 LINE L1 -937 5209 4503 27 0 0 0 chrX 21400738 21400765 -155573375 + AT_rich Low_complexity Low_complexity 1 27 0 309 292 114 0 chrX 21401562 21401713 -155572427 - MLT1A2 LTR MaLR -11 379 188 21 0 0 0 chrX 21401727 21401748 -155572392 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chrX 21402475 21402506 -155571634 + (CA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chrX 21404036 21404069 -155570071 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chrX 21406185 21406228 -155567912 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chrX 21406436 21406463 -155567677 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chrX 21406712 21406745 -155567395 + AT_rich Low_complexity Low_complexity 1 33 0 493 160 0 11 chrX 21407019 21407113 -155567027 - L1MA3 LINE L1 0 6305 6213 1894 137 20 3 chrX 21408568 21408868 -155565272 - AluSq SINE Alu -8 305 1 381 130 29 0 chrX 21409977 21410046 -155564094 - L1PA16 LINE L1 -3 6163 6093 3392 195 10 6 chrX 21410048 21410908 -155563232 + L1P4 LINE L1 4639 5501 -665 1271 255 43 6 chrX 21411152 21411481 -155562659 + MER58B DNA MER1_type 1 341 0 313 323 0 0 chrX 21412525 21412624 -155561516 + L2 LINE L2 3206 3304 -9 567 200 0 10 chrX 21413776 21413876 -155560264 - MER5B DNA MER1_type -2 176 78 306 269 32 86 chrX 21414559 21414745 -155559395 - MER104 DNA Tc2 -4 176 1 274 279 25 0 chrX 21417251 21417330 -155556810 - HsTC2 DNA Tc2 -1326 572 492 337 221 0 0 chrX 21417332 21417409 -155556731 - HsTC2 DNA Tc2 -1600 298 222 188 300 125 25 chrX 21417552 21417620 -155556520 + L2 LINE L2 3190 3265 -48 261 381 122 0 chrX 21417620 21417759 -155556381 + MER91A DNA MER1_type 4 159 -37 1717 227 45 18 chrX 21418790 21419284 -155554856 + Charlie4a DNA MER1_type 2 508 0 32 81 0 0 chrX 21419380 21419454 -155554686 + AT_rich Low_complexity Low_complexity 1 74 0 23 33 0 0 chrX 21419981 21420011 -155554129 + AT_rich Low_complexity Low_complexity 1 30 0 240 208 21 0 chrX 21420387 21420435 -155553705 + CT-rich Low_complexity Low_complexity 3 51 0 322 241 11 0 chrX 21421767 21421854 -155552286 + CT-rich Low_complexity Low_complexity 2 89 0 237 119 0 0 chrX 21422260 21422302 -155551838 + (TC)n Simple_repeat Simple_repeat 1 42 0 261 0 0 0 chrX 21424036 21424065 -155550075 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1866 130 4 0 chrX 21424084 21424360 -155549780 - AluSx SINE Alu -35 277 1 68 24 0 0 chrX 21424939 21425021 -155549119 + AT_rich Low_complexity Low_complexity 1 82 0 309 284 46 72 chrX 21425749 21425969 -155548171 + MIR SINE MIR 4 216 -46 375 60 0 0 chrX 21427166 21427216 -155546924 + (TG)n Simple_repeat Simple_repeat 1 50 0 233 379 21 0 chrX 21427277 21427372 -155546768 - L2 LINE L2 -681 2633 2537 * 292 307 49 43 chrX 21427366 21427529 -155546611 + MER5A DNA MER1_type 24 187 -2 * 776 219 7 0 chrX 21427390 21427545 -155546595 - MER5A DNA MER1_type -33 156 1 2169 103 3 7 chrX 21427677 21427979 -155546161 + AluSx SINE Alu 1 301 -11 243 0 0 0 chrX 21428459 21428486 -155545654 + (T)n Simple_repeat Simple_repeat 1 27 0 30 27 0 0 chrX 21428918 21428955 -155545185 + AT_rich Low_complexity Low_complexity 1 37 0 210 298 0 0 chrX 21429734 21429791 -155544349 + GA-rich Low_complexity Low_complexity 4 60 0 27 0 0 0 chrX 21430228 21430255 -155543885 + AT_rich Low_complexity Low_complexity 1 27 0 26 74 0 0 chrX 21430276 21430330 -155543810 + AT_rich Low_complexity Low_complexity 1 54 0 833 234 117 3 chrX 21432269 21432559 -155541581 + MER33 DNA MER1_type 1 323 -1 307 292 10 10 chrX 21432747 21432843 -155541297 - L3 LINE CR1 -197 1380 1285 213 267 151 48 chrX 21433465 21433611 -155540529 - L3 LINE CR1 -1046 531 371 854 271 102 0 chrX 21433721 21433946 -155540194 - MIR SINE MIR 0 262 15 22 35 0 0 chrX 21436754 21436783 -155537357 + AT_rich Low_complexity Low_complexity 1 29 0 250 253 25 25 chrX 21443651 21443730 -155530410 + MER116 DNA Mariner 1 79 -1 198 74 0 0 chrX 21444395 21444422 -155529718 + L2 LINE L2 3274 3300 -13 192 200 0 0 chrX 21444711 21444756 -155529384 + (TAGG)n Simple_repeat Simple_repeat 1 45 0 288 291 221 17 chrX 21445592 21445764 -155528376 + MIR SINE MIR 6 212 -50 274 278 121 60 chrX 21446690 21446938 -155527202 + L1MEc LINE L1 1493 1755 -4641 561 311 153 43 chrX 21447467 21448093 -155526047 + L2 LINE L2 2282 2976 -338 628 112 20 0 chrX 21448550 21448648 -155525492 + AluS SINE Alu 1 100 -213 318 217 50 50 chrX 21448648 21448809 -155525331 + (CATATA)n Simple_repeat Simple_repeat 2 162 0 413 206 71 24 chrX 21448813 21448983 -155525157 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 194 83 0 chrX 21449019 21449091 -155525049 + (TA)n Simple_repeat Simple_repeat 1 78 0 314 131 62 35 chrX 21449097 21449242 -155524898 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 446 157 63 0 chrX 21449335 21449494 -155524646 + (TA)n Simple_repeat Simple_repeat 1 169 0 904 184 6 0 chrX 21449494 21449657 -155524483 + AluSg/x SINE Alu 130 293 -19 333 323 71 13 chrX 21449764 21449919 -155524221 - MIR SINE MIR -50 212 49 305 277 89 9 chrX 21449964 21450076 -155524064 + MER103 DNA DNA 1 121 -45 24 32 0 0 chrX 21450895 21450926 -155523214 + AT_rich Low_complexity Low_complexity 1 31 0 379 323 48 33 chrX 21451398 21451683 -155522457 + L1MEc LINE L1 1535 1798 -857 344 299 84 13 chrX 21451795 21451949 -155522191 + L2 LINE L2 2042 2206 -1108 495 316 146 40 chrX 21452027 21452412 -155521728 + L2 LINE L2 2646 3115 -198 299 25 25 0 chrX 21452412 21452452 -155521688 + (CA)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 21452452 21452674 -155521466 + L2 LINE L2 3115 3312 -1 247 208 0 0 chrX 21454083 21454131 -155520009 - L2 LINE L2 -1 3271 3224 603 326 51 43 chrX 21455395 21455809 -155518331 + L2 LINE L2 2877 3293 -20 192 40 0 0 chrX 21455817 21455842 -155518298 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 21456923 21456945 -155517195 + AT_rich Low_complexity Low_complexity 1 22 0 180 179 0 0 chrX 21457821 21457860 -155516280 + GA-rich Low_complexity Low_complexity 3 41 0 2086 117 0 7 chrX 21457944 21458243 -155515897 - AluSx SINE Alu -15 297 1 802 78 0 0 chrX 21458961 21459064 -155515076 + AluSg/x SINE Alu 200 302 -10 380 355 24 24 chrX 21460095 21460385 -155513755 - L1M4 LINE L1 -3539 2607 2318 1911 127 22 6 chrX 21460574 21460896 -155513244 - L1MA4A LINE L1 -5 6298 5972 23 33 0 0 chrX 21461330 21461360 -155512780 + AT_rich Low_complexity Low_complexity 1 30 0 1829 186 21 3 chrX 21461532 21461870 -155512270 + MER2 DNA MER2_type 1 344 0 647 275 42 108 chrX 21462083 21462271 -155511869 - HAL1 LINE L1 -962 1545 1346 1493 188 7 14 chrX 21462271 21462581 -155511559 - AluJo SINE Alu 0 316 9 647 275 42 108 chrX 21462581 21463079 -155511061 - HAL1 LINE L1 -1161 1346 903 180 0 0 0 chrX 21463185 21463205 -155510935 + (TTG)n Simple_repeat Simple_repeat 2 21 0 809 214 39 34 chrX 21464308 21464514 -155509626 + MER3 DNA MER1_type 2 208 -1 277 259 59 0 chrX 21464989 21465074 -155509066 + MER103 DNA DNA 18 107 -59 222 220 20 0 chrX 21465436 21465486 -155508654 - L2 LINE L2 0 3313 3263 309 177 135 21 chrX 21468904 21469000 -155505140 + L1MA1 LINE L1 5884 5990 -312 14444 91 28 9 chrX 21469341 21472243 -155501897 - L1PA7 LINE L1 0 6154 3187 4448 214 16 17 chrX 21474707 21475828 -155498312 - L1P LINE L1 -2297 3849 2730 1506 155 74 0 chrX 21475829 21476087 -155498053 + Tigger3(Golem) DNA MER2_type 2752 3028 -1 331 315 30 80 chrX 21476528 21476557 -155497583 - MIR SINE MIR -60 202 173 761 221 35 0 chrX 21476557 21476729 -155497411 - MER45A DNA AcHobo 0 178 1 331 315 30 80 chrX 21476729 21476899 -155497241 - MIR SINE MIR -89 173 13 200 359 67 26 chrX 21476923 21477118 -155497022 + L3 LINE CR1 341 543 -1034 252 373 34 52 chrX 21478034 21478302 -155495838 + L3 LINE CR1 1191 1453 -124 26 30 0 0 chrX 21478971 21479004 -155495136 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chrX 21480232 21480269 -155493871 + AT_rich Low_complexity Low_complexity 1 37 0 205 161 0 0 chrX 21481182 21481213 -155492927 + polypyrimidine Low_complexity Low_complexity 2 32 0 1664 204 24 3 chrX 21481925 21482259 -155491881 + MER58B DNA MER1_type 1 341 0 251 345 26 26 chrX 21482872 21482988 -155491152 - MIR SINE MIR 0 262 147 449 261 39 8 chrX 21483095 21483225 -155490915 - MER94 DNA DNA 0 134 1 2135 98 0 14 chrX 21483610 21483905 -155490235 - AluSg1 SINE Alu -18 291 1 348 256 178 91 chrX 21484167 21484230 -155489910 + MIR SINE MIR 7 63 -199 1595 150 0 4 chrX 21484230 21484496 -155489644 - L1PA15 LINE L1 0 6165 5901 348 256 178 91 chrX 21484496 21484662 -155489478 + MIR SINE MIR 63 256 -6 183 162 0 0 chrX 21484768 21484805 -155489335 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 181 268 36 18 chrX 21485391 21485447 -155488693 + L2 LINE L2 3216 3272 0 210 171 98 0 chrX 21486680 21486721 -155487419 - MIR SINE MIR -123 139 95 601 237 69 0 chrX 21487050 21487223 -155486917 + MER5A DNA MER1_type 1 185 -4 591 205 0 10 chrX 21487241 21487387 -155486753 - MER5A DNA MER1_type 0 189 4 2314 122 58 23 chrX 21487463 21487896 -155486244 - LTR7 LTR ERV1 -2 448 1 615 352 131 21 chrX 21488421 21489213 -155484927 + L2 LINE L2 1871 2749 -565 222 167 0 24 chrX 21489316 21489358 -155484782 + MER5C DNA MER1_type 36 76 -248 223 346 85 90 chrX 21489552 21489765 -155484375 + L2 LINE L2 2866 3078 -194 2111 122 0 0 chrX 21489765 21490069 -155484071 - AluSc SINE Alu -5 304 1 223 346 85 90 chrX 21490069 21490257 -155483883 + L2 LINE L2 3078 3265 -7 1021 268 70 68 chrX 21490285 21490796 -155483344 - LTR33A LTR ERVL -11 512 1 192 371 56 0 chrX 21490810 21490899 -155483241 + MIR SINE MIR 50 143 -65 1628 221 11 32 chrX 21491193 21491408 -155482732 + MLT1A2 LTR MaLR 5 210 -164 1793 172 92 25 chrX 21491408 21491809 -155482331 - MSTA LTR MaLR 0 428 1 1628 221 11 32 chrX 21491809 21491969 -155482171 + MLT1A2 LTR MaLR 210 372 -2 991 257 0 0 chrX 21492954 21493160 -155480980 - MER58A DNA MER1_type -16 208 3 554 345 15 15 chrX 21493400 21493606 -155480534 - MIR SINE MIR -27 235 30 380 125 0 0 chrX 21496464 21496520 -155477620 - MER4A LTR ERV1 0 664 609 1016 109 34 0 chrX 21496520 21496667 -155477473 + AluSg/x SINE Alu 161 312 0 2753 126 66 72 chrX 21496669 21496831 -155477309 - MER4B LTR ERV1 -40 570 409 2304 82 0 19 chrX 21496831 21497146 -155476994 + AluY SINE Alu 3 311 0 2753 126 66 72 chrX 21497146 21497556 -155476584 - MER4B LTR ERV1 -201 409 1 2202 114 0 0 chrX 21497729 21498027 -155476113 - AluSx SINE Alu -14 298 1 222 200 67 0 chrX 21501675 21501720 -155472420 + L2 LINE L2 3216 3263 -9 2541 30 0 7 chrX 21501820 21502121 -155472019 + AluY SINE Alu 1 299 -12 3722 146 58 7 chrX 21502234 21502907 -155471233 - MER39 LTR ERV1 0 707 1 1011 346 77 32 chrX 21503378 21503521 -155470619 - L2 LINE L2 -465 2849 2714 740 202 40 0 chrX 21503521 21503694 -155470446 + L1MA4 LINE L1 6117 6296 -4 1011 346 77 32 chrX 21503694 21503922 -155470218 - L2 LINE L2 -600 2714 2498 1722 192 40 0 chrX 21503922 21504271 -155469869 - MLT1A1 LTR MaLR -1 364 2 1011 346 77 32 chrX 21504271 21504741 -155469399 - L2 LINE L2 -816 2498 1969 975 118 0 0 chrX 21504741 21504877 -155469263 + AluSc SINE Alu 156 291 -18 271 385 53 15 chrX 21504884 21505149 -155468991 - L2 LINE L2 -1707 1607 1333 180 0 0 0 chrX 21505189 21505209 -155468931 + (A)n Simple_repeat Simple_repeat 1 20 0 1111 292 60 22 chrX 21505249 21505615 -155468525 - LTR16C LTR ERVL 0 491 112 198 325 77 0 chrX 21505805 21505922 -155468218 + L3 LINE CR1 632 757 -820 187 323 43 11 chrX 21506082 21506175 -155467965 + MIR SINE MIR 93 188 -74 355 313 31 82 chrX 21506237 21506528 -155467612 + L3 LINE CR1 775 1050 -527 1078 152 152 62 chrX 21506676 21506966 -155467174 - L1MA8 LINE L1 -258 6033 5718 243 0 0 0 chrX 21507029 21507056 -155467084 + (A)n Simple_repeat Simple_repeat 1 27 0 562 280 75 29 chrX 21507086 21507443 -155466697 - MLT1H1 LTR MaLR -9 546 152 472 325 43 43 chrX 21507491 21507725 -155466415 + L3 LINE CR1 1313 1546 -31 225 94 0 0 chrX 21508393 21508425 -155465715 + (AATAG)n Simple_repeat Simple_repeat 2 33 0 375 266 288 14 chrX 21510204 21510343 -155463797 + MER5A DNA MER1_type 10 186 -3 2466 21 7 0 chrX 21511308 21511593 -155462547 - AluY SINE Alu -23 288 2 623 358 157 28 chrX 21512051 21512765 -155461375 + L2 LINE L2 1940 2759 -555 2285 242 26 8 chrX 21512765 21513368 -155460772 + MER90 LTR ERV1 1 614 0 623 358 157 28 chrX 21513368 21513413 -155460727 + L2 LINE L2 2759 2797 -517 2326 77 3 7 chrX 21514502 21514812 -155459328 - AluSc SINE Alu 0 309 1 206 350 0 0 chrX 21514814 21514874 -155459266 - L2 LINE L2 -1413 1901 1842 223 235 0 20 chrX 21515026 21515077 -155459063 + (TA)n Simple_repeat Simple_repeat 1 50 0 939 298 148 24 chrX 21515454 21516218 -155457922 - L2 LINE L2 -21 3292 2421 736 289 50 15 chrX 21516219 21516479 -155457661 - L2 LINE L2 -1176 2138 1870 21 0 0 0 chrX 21516845 21516866 -155457274 + AT_rich Low_complexity Low_complexity 1 21 0 2420 73 0 0 chrX 21516944 21517244 -155456896 + AluY SINE Alu 1 300 -11 353 291 71 8 chrX 21517419 21517546 -155456594 - MIR SINE MIR -71 191 57 330 289 72 102 chrX 21517592 21517897 -155456243 - L3 LINE CR1 -338 1239 944 280 348 36 22 chrX 21518096 21518234 -155455906 + MIR3 SINE MIR 4 143 -65 403 125 28 14 chrX 21518372 21518444 -155455696 + MIR SINE MIR 106 178 -84 5868 179 23 22 chrX 21519694 21521048 -155453092 - L1MC1 LINE L1 -2 6331 4981 909 155 140 10 chrX 21521148 21521348 -155452792 - L1PA16 LINE L1 0 6166 5941 2243 104 0 10 chrX 21521404 21521712 -155452428 - AluSx SINE Alu -7 305 1 1083 239 19 0 chrX 21521892 21522155 -155451985 - L1MC1 LINE L1 -1173 4973 4706 2082 86 33 43 chrX 21522197 21522501 -155451639 + AluSg SINE Alu 1 301 -9 1260 198 0 30 chrX 21522666 21522934 -155451206 - AluJo SINE Alu -32 280 21 746 207 9 68 chrX 21522974 21523196 -155450944 - MER3 DNA MER1_type 0 209 1 205 255 20 0 chrX 21525736 21525787 -155448353 + L2 LINE L2 3252 3303 -10 25 90 0 0 chrX 21528042 21528109 -155446031 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chrX 21530323 21530353 -155443787 + AT_rich Low_complexity Low_complexity 1 30 0 634 171 0 0 chrX 21531058 21531169 -155442971 - FRAM SINE Alu -9 167 57 620 317 53 28 chrX 21531397 21531640 -155442500 - MIR SINE MIR -8 254 3 2239 64 4 0 chrX 21533715 21533996 -155440144 - AluY SINE Alu -29 282 1 29 60 0 0 chrX 21534247 21534297 -155439843 + AT_rich Low_complexity Low_complexity 1 50 0 295 186 157 0 chrX 21535563 21535633 -155438507 - LTR33 LTR ERVL -432 89 9 265 160 20 0 chrX 21536040 21536090 -155438050 - L1PA14 LINE L1 -251 5910 5860 911 213 72 61 chrX 21536393 21536838 -155437302 - MLT1B LTR MaLR 0 390 1 213 347 50 33 chrX 21537017 21537138 -155437002 - L2 LINE L2 -249 3064 2942 5934 30 1 0 chrX 21538857 21539582 -155434558 - L1P LINE L1 -809 5337 4612 835 199 74 61 chrX 21539582 21539879 -155434261 - MER33 DNA MER1_type -3 321 21 463 216 0 10 chrX 21539888 21539985 -155434155 + MER94 DNA DNA 5 100 -34 2177 108 13 3 chrX 21540013 21540319 -155433821 + AluSq SINE Alu 1 309 -4 191 243 20 7 chrX 21540376 21540524 -155433616 + (TA)n Simple_repeat Simple_repeat 1 150 0 207 0 0 0 chrX 21542210 21542233 -155431907 + (T)n Simple_repeat Simple_repeat 1 23 0 1734 184 4 1 chrX 21543412 21543751 -155430389 + L1MB8 LINE L1 5667 6005 -173 328 369 131 24 chrX 21544148 21544785 -155429355 - L2 LINE L2 -8 3264 2552 47 19 0 0 chrX 21545047 21545101 -155429039 + AT_rich Low_complexity Low_complexity 1 54 0 230 275 22 22 chrX 21545348 21545439 -155428701 + L1MC4 LINE L1 6614 6704 -1338 218 383 0 33 chrX 21545447 21545627 -155428513 + (CA)n Simple_repeat Simple_repeat 2 175 0 * 375 315 34 0 chrX 21545496 21545645 -155428495 + (CATA)n Simple_repeat Simple_repeat 3 156 0 255 61 0 0 chrX 21545646 21545679 -155428461 + (CA)n Simple_repeat Simple_repeat 2 34 0 1850 143 21 13 chrX 21545698 21546176 -155427964 - L1M2 LINE L1 -700 5591 5110 602 190 30 10 chrX 21546175 21546331 -155427809 + L1MC/D LINE L1 5693 5854 -545 * 2411 180 17 19 chrX 21546391 21546908 -155427232 + L1MA7 LINE L1 5776 6291 0 397 150 110 20 chrX 21547957 21548057 -155426083 - MER33 DNA MER1_type -1 362 254 528 248 43 7 chrX 21548090 21548231 -155425909 - MER33 DNA MER1_type -178 146 1 203 305 0 0 chrX 21548518 21548577 -155425563 + CT-rich Low_complexity Low_complexity 3 61 0 5825 165 18 14 chrX 21550116 21551813 -155422327 + L1PB1 LINE L1 4093 5792 -359 300 91 0 0 chrX 21551813 21551857 -155422283 + (TG)n Simple_repeat Simple_repeat 2 45 0 5825 165 18 14 chrX 21551857 21552218 -155421922 + L1PB1 LINE L1 5792 6150 -1 229 291 69 11 chrX 21552694 21552869 -155421271 - L1MEc LINE L1 -5195 1201 1017 183 80 0 0 chrX 21552981 21553006 -155421134 + (CATATA)n Simple_repeat Simple_repeat 4 28 0 267 262 19 16 chrX 21553350 21553461 -155420679 + MIR SINE MIR 19 130 -78 185 322 107 33 chrX 21553464 21553585 -155420555 + MIR SINE MIR 108 237 -25 1705 198 27 0 chrX 21554263 21554597 -155419543 + MER2 DNA MER2_type 1 343 -1 2149 104 3 7 chrX 21554762 21555059 -155419081 - AluSq SINE Alu -17 296 1 27 29 0 0 chrX 21555685 21555719 -155418421 + AT_rich Low_complexity Low_complexity 1 34 0 251 191 16 16 chrX 21556167 21556230 -155417910 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 227 161 0 36 chrX 21556306 21556362 -155417778 + L1ME LINE L1 5808 5861 -260 21 0 0 0 chrX 21556802 21556823 -155417317 + AT_rich Low_complexity Low_complexity 1 21 0 890 236 10 10 chrX 21558151 21558350 -155415790 - MLT1D LTR MaLR 0 505 307 253 218 115 0 chrX 21558351 21558429 -155415711 + L1MC4 LINE L1 6614 6700 -1342 240 181 64 21 chrX 21558436 21558530 -155415610 + (TA)n Simple_repeat Simple_repeat 1 98 0 193 279 0 0 chrX 21559031 21559074 -155415066 - L2 LINE L2 -88 3225 3183 1847 199 40 86 chrX 21559083 21559606 -155414534 - MLT1D LTR MaLR 0 505 7 2188 118 0 3 chrX 21560172 21560478 -155413662 + AluSc SINE Alu 3 307 -2 23 33 0 0 chrX 21560583 21560613 -155413527 + AT_rich Low_complexity Low_complexity 1 30 0 900 209 0 68 chrX 21561530 21561765 -155412375 + MER20 DNA MER1_type 1 219 0 1737 174 0 13 chrX 21563075 21563380 -155410760 - AluJo SINE Alu -11 301 1 1318 184 132 16 chrX 21563644 21563948 -155410192 + MER44D DNA MER2_type 1 609 0 21 36 0 0 chrX 21564232 21564260 -155409880 + AT_rich Low_complexity Low_complexity 1 28 0 359 308 179 48 chrX 21565104 21565684 -155408456 - L2 LINE L2 -74 3239 2599 1520 154 25 3 chrX 21565721 21566006 -155408134 - L1M2 LINE L1 -693 5604 5314 591 176 0 0 chrX 21566082 21566184 -155407956 + L1MA9 LINE L1 5161 5262 -884 1871 174 27 37 chrX 21566699 21567106 -155407034 - L1MA10 LINE L1 0 6334 5932 3368 166 31 23 chrX 21567107 21567803 -155406337 + L1MA10 LINE L1 5207 5909 -403 622 360 29 0 chrX 21567830 21568072 -155406068 + MIR SINE MIR 9 257 -5 2196 273 150 39 chrX 21568296 21569405 -155404735 + L2 LINE L2 1331 2562 -752 483 18 0 0 chrX 21569419 21569475 -155404665 + (CA)n Simple_repeat Simple_repeat 1 56 0 336 294 147 42 chrX 21570229 21570794 -155403346 - L1MC4a LINE L1 -1909 5899 5276 244 241 0 0 chrX 21571394 21571452 -155402688 + A-rich Low_complexity Low_complexity 1 58 0 25 0 0 0 chrX 21571512 21571537 -155402603 + AT_rich Low_complexity Low_complexity 1 25 0 419 351 90 5 chrX 21572254 21572465 -155401675 + MIR SINE MIR 34 262 0 21 0 0 0 chrX 21572488 21572509 -155401631 + AT_rich Low_complexity Low_complexity 1 21 0 242 157 0 0 chrX 21572617 21572668 -155401472 + L1MA4A LINE L1 6246 6296 -7 483 305 64 84 chrX 21572745 21573138 -155401002 - L2 LINE L2 -4 3309 2925 406 303 0 42 chrX 21573359 21573500 -155400640 - MIR3 SINE MIR -15 193 57 943 41 0 86 chrX 21573529 21573777 -155400363 + (TTTCC)n Simple_repeat Simple_repeat 1 226 0 22 0 0 0 chrX 21574638 21574660 -155399480 + AT_rich Low_complexity Low_complexity 1 22 0 686 255 0 65 chrX 21574751 21574951 -155399189 - MER5A DNA MER1_type 0 189 3 321 306 16 75 chrX 21575378 21575564 -155398576 + MIR SINE MIR 84 258 -4 923 296 68 38 chrX 21575803 21576276 -155397864 + LTR16C LTR ERVL 1 487 -4 2202 222 52 16 chrX 21576336 21576890 -155397250 - MER90 LTR ERV1 0 575 2 643 315 50 5 chrX 21577655 21577874 -155396266 + MIR SINE MIR 9 237 -25 198 378 0 0 chrX 21578672 21578746 -155395394 - L2 LINE L2 -4 3268 3195 397 327 149 33 chrX 21579189 21579793 -155394347 - L1MEc LINE L1 -826 1664 1320 279 278 29 54 chrX 21579897 21580102 -155394038 - L1MEc LINE L1 -4936 1183 984 832 301 81 17 chrX 21583180 21583998 -155390142 - L1ME2 LINE L1 -281 5883 5016 375 281 119 32 chrX 21584022 21584367 -155389773 + L1ME4a LINE L1 5573 5947 -174 238 267 93 23 chrX 21585653 21585739 -155388401 - MIR3 SINE MIR -9 199 108 518 411 21 7 chrX 21585825 21586107 -155388033 + L3 LINE CR1 918 1203 -374 205 254 28 28 chrX 21587940 21588011 -155386129 - MIR SINE MIR -34 228 158 1520 167 4 7 chrX 21589087 21589356 -155384784 - AluJb SINE Alu -16 296 29 418 197 0 71 chrX 21589695 21589822 -155384318 - LTR41 LTR ERVL -6 767 650 474 204 217 0 chrX 21590344 21590496 -155383644 - LTR41 LTR ERVL -586 187 3 240 261 274 45 chrX 21590496 21590653 -155383487 + MIR SINE MIR 57 249 -13 372 163 0 0 chrX 21590756 21590842 -155383298 + (TA)n Simple_repeat Simple_repeat 2 87 0 899 120 0 0 chrX 21591614 21591747 -155382393 - AluSg/x SINE Alu 0 312 180 250 255 0 113 chrX 21592278 21592350 -155381790 - MIR SINE MIR -37 225 167 2226 114 0 0 chrX 21592350 21592658 -155381482 - AluSx SINE Alu -4 308 1 250 255 0 113 chrX 21592658 21592691 -155381449 - MIR SINE MIR -95 167 132 379 307 43 64 chrX 21594007 21594427 -155379713 + L1MEd LINE L1 529 939 -5180 4689 197 12 21 chrX 21594603 21595643 -155378497 + L1MA10 LINE L1 5274 6304 -30 479 291 90 19 chrX 21595653 21596086 -155378054 + L1MEd LINE L1 1131 1594 -4535 232 339 0 15 chrX 21596428 21596540 -155377600 + A-rich Low_complexity Low_complexity 1 112 -16 1416 131 86 96 chrX 21596540 21596854 -155377286 + AluSq SINE Alu 1 311 -2 232 339 0 15 chrX 21596854 21596871 -155377269 + A-rich Low_complexity Low_complexity 112 128 0 462 319 132 6 chrX 21596916 21597142 -155376998 + L1MEd LINE L1 2160 2445 -3684 1964 136 10 0 chrX 21597142 21597437 -155376703 + AluSx SINE Alu 1 298 -14 462 319 132 6 chrX 21597437 21597552 -155376588 + L1MEd LINE L1 2445 2544 -3585 619 310 129 34 chrX 21597762 21598550 -155375590 + L1MEd LINE L1 2862 3760 -2369 902 283 52 15 chrX 21598571 21598896 -155375244 + L2 LINE L2 2153 2489 -825 5159 159 38 11 chrX 21598943 21600362 -155373778 - L1PA15 LINE L1 -16 6149 4696 782 239 24 0 chrX 21601339 21601506 -155372634 - MER45A DNA AcHobo 0 178 8 22 0 0 0 chrX 21602197 21602219 -155371921 + AT_rich Low_complexity Low_complexity 1 22 0 201 237 0 0 chrX 21602544 21602603 -155371537 + (TA)n Simple_repeat Simple_repeat 1 59 0 225 266 106 32 chrX 21603715 21603809 -155370331 - MER5A DNA MER1_type -73 116 16 329 329 0 28 chrX 21607092 21607302 -155366838 + G-rich Low_complexity Low_complexity 1 204 0 201 175 0 0 chrX 21607345 21607385 -155366755 + (TA)n Simple_repeat Simple_repeat 2 41 0 313 299 23 0 chrX 21607391 21607478 -155366662 + L1MC4 LINE L1 6614 6702 -1340 * 314 258 0 43 chrX 21607407 21607500 -155366640 - L1MC4 LINE L1 -1339 6703 6615 255 125 0 0 chrX 21607500 21607540 -155366600 + (CA)n Simple_repeat Simple_repeat 1 40 0 1686 129 47 85 chrX 21607549 21607913 -155366227 - THE1C LTR MaLR -25 350 1 1361 145 0 12 chrX 21608228 21608469 -155365671 + L1MA2 LINE L1 6054 6291 -13 500 309 83 13 chrX 21608891 21609121 -155365019 - MIR SINE MIR -6 256 11 2374 68 0 3 chrX 21609724 21610040 -155364100 - AluY SINE Alu 0 315 1 186 189 0 0 chrX 21610042 21610079 -155364061 + (TTA)n Simple_repeat Simple_repeat 2 38 0 805 165 61 25 chrX 21610241 21610539 -155363601 + MSTA LTR MaLR 1 369 -57 * 1499 191 88 41 chrX 21610533 21610895 -155363245 + MSTA LTR MaLR 33 411 -17 577 330 19 15 chrX 21613411 21613617 -155360523 - MIR SINE MIR -4 258 52 802 302 141 12 chrX 21613701 21614105 -155360035 + L2 LINE L2 2852 3307 -6 781 138 0 58 chrX 21616293 21616431 -155357709 - FLAM_C SINE Alu -2 131 2 290 359 122 30 chrX 21618482 21618744 -155355396 - L3 LINE CR1 -12 1565 1280 432 0 0 0 chrX 21619407 21619455 -155354685 + (GA)n Simple_repeat Simple_repeat 1 48 0 2687 28 0 0 chrX 21619512 21619832 -155354308 - L1PA4 LINE L1 -1 6154 5835 524 115 0 0 chrX 21620143 21620221 -155353919 + (GGGGA)n Simple_repeat Simple_repeat 4 81 0 420 323 31 21 chrX 21620396 21620588 -155353552 + MIR3 SINE MIR 15 208 0 1614 112 16 0 chrX 21620732 21620983 -155353157 + L1MA5A LINE L1 6040 6294 -3 202 340 0 0 chrX 21621248 21621301 -155352839 + MIR3 SINE MIR 111 163 -45 9591 191 32 18 chrX 21621529 21624557 -155349583 + L1MB1 LINE L1 3069 6142 -26 441 273 91 3 chrX 21626162 21626340 -155347800 + MIR SINE MIR 1 248 -14 24 100 0 0 chrX 21627713 21627793 -155346347 + AT_rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chrX 21628505 21628532 -155345608 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 133 0 0 chrX 21629012 21629057 -155345083 - L1MA3 LINE L1 -3 6302 6258 205 266 31 0 chrX 21629961 21630025 -155344115 + (TG)n Simple_repeat Simple_repeat 1 66 0 5593 161 11 6 chrX 21632668 21633838 -155340302 - L1PA16 LINE L1 -1 6165 4993 394 215 0 19 chrX 21633831 21633938 -155340202 - L1 LINE L1 -1251 4895 4791 * 719 170 0 0 chrX 21634489 21634624 -155339516 + L1MA4 LINE L1 6166 6300 0 374 91 0 18 chrX 21635778 21635854 -155338286 - L1PB1 LINE L1 -420 5731 5680 * 2138 126 13 78 chrX 21635851 21636247 -155337893 + L1PB1 LINE L1 5735 6104 -47 * 3856 32 9 0 chrX 21636243 21636704 -155337436 - L1PA4 LINE L1 -262 5892 5428 2414 18 0 0 chrX 21636704 21636985 -155337155 + L1PA4 LINE L1 5870 6152 -3 308 133 12 48 chrX 21636985 21637064 -155337076 + L1PB1 LINE L1 6069 6148 -3 27 62 0 0 chrX 21637623 21637671 -155336469 + AT_rich Low_complexity Low_complexity 1 48 0 1209 226 76 6 chrX 21639742 21640056 -155334084 + MER58B DNA MER1_type 6 341 0 357 125 0 0 chrX 21640165 21640221 -155333919 + (CAA)n Simple_repeat Simple_repeat 2 57 0 1799 161 3 16 chrX 21641089 21641399 -155332741 + AluSx SINE Alu 7 312 0 189 0 0 0 chrX 21641403 21641424 -155332716 + (GA)n Simple_repeat Simple_repeat 2 22 0 201 385 55 69 chrX 21641426 21641644 -155332496 - L2 LINE L2 -21 3251 3037 2443 77 0 3 chrX 21641684 21641996 -155332144 - AluY SINE Alu 0 311 1 336 261 113 11 chrX 21642073 21642191 -155331949 - MER5A DNA MER1_type -54 124 8 1031 241 12 19 chrX 21642386 21642643 -155331497 + L1ME3A LINE L1 5916 6170 0 1741 323 171 17 chrX 21642899 21643991 -155330149 + L2 LINE L2 1715 2974 -340 1065 240 83 63 chrX 21644004 21644558 -155329582 + MER34B LTR ERV1 1 565 0 201 328 17 0 chrX 21644559 21644617 -155329523 + L2 LINE L2 2984 3042 -271 1885 151 0 10 chrX 21644632 21644993 -155329147 + AluSx SINE Alu 5 362 0 357 314 31 31 chrX 21645069 21645228 -155328912 + L2 LINE L2 3152 3310 -3 789 301 80 4 chrX 21645968 21646230 -155327910 + LTR16A LTR ERVL 1 282 -168 1338 273 79 47 chrX 21646236 21646731 -155327409 + REP3 LTR ERV 5 515 -47 566 298 0 0 chrX 21646748 21646889 -155327251 + LTR16A LTR ERVL 283 423 -27 1972 142 4 0 chrX 21646889 21647201 -155326939 + AluSp SINE Alu 1 313 0 275 158 0 0 chrX 21647221 21647259 -155326881 + LTR16A LTR ERVL 413 450 0 1328 188 72 14 chrX 21647549 21647708 -155326432 - AluJo SINE Alu -20 292 109 432 0 0 0 chrX 21647708 21647756 -155326384 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1328 188 72 14 chrX 21647756 21647872 -155326268 - AluJo SINE Alu -203 109 1 2028 92 60 0 chrX 21648589 21648873 -155325267 - AluY SINE Alu -10 301 1 189 159 0 0 chrX 21649538 21649582 -155324558 + (TG)n Simple_repeat Simple_repeat 2 45 0 211 261 174 54 chrX 21649593 21649685 -155324455 + MER91A DNA MER1_type 28 130 -66 313 369 119 12 chrX 21650160 21650328 -155323812 + MER91A DNA MER1_type 1 186 -10 210 258 0 0 chrX 21650531 21650593 -155323547 + (CATATA)n Simple_repeat Simple_repeat 5 66 0 234 250 17 43 chrX 21650593 21650612 -155323528 - L1MA4A LINE L1 -2 6301 6283 1213 187 51 29 chrX 21650612 21650885 -155323255 - L1PB4 LINE L1 -1 6155 5877 308 267 0 0 chrX 21650914 21651004 -155323136 + L1MC4 LINE L1 6614 6703 -1339 286 239 0 22 chrX 21650924 21651016 -155323124 - L1MC4 LINE L1 -1339 6703 6614 * 781 268 150 26 chrX 21651127 21651637 -155322503 + L1ME3A LINE L1 5589 6169 -1 443 303 62 45 chrX 21653496 21653740 -155320400 - MIR SINE MIR 0 262 15 351 0 0 0 chrX 21653992 21654031 -155320109 + (TG)n Simple_repeat Simple_repeat 1 39 0 182 302 0 0 chrX 21654248 21654301 -155319839 - L2 LINE L2 -213 3059 3007 429 265 139 6 chrX 21654374 21654540 -155319600 - L1ME1 LINE L1 -2 6164 5977 3945 143 5 9 chrX 21654600 21655245 -155318895 - L1PA15 LINE L1 -3 6162 5521 279 0 0 0 chrX 21658045 21658076 -155316064 + (T)n Simple_repeat Simple_repeat 1 31 0 1119 131 7 6 chrX 21658547 21658743 -155315397 - L1M2 LINE L1 -513 5784 5587 216 238 188 12 chrX 21660408 21660488 -155313652 - MIR3 SINE MIR -23 185 92 944 57 0 0 chrX 21661226 21661350 -155312790 - L1PA4 LINE L1 -1 6154 6031 427 246 59 25 chrX 21661519 21661637 -155312503 - MIR SINE MIR -117 145 24 3237 70 0 16 chrX 21662398 21662840 -155311300 - L1PA8 LINE L1 -3 6169 5735 225 242 8 17 chrX 21663437 21663557 -155310583 + (TA)n Simple_repeat Simple_repeat 1 119 0 1894 26 0 0 chrX 21664409 21664636 -155309504 - L1PA4 LINE L1 -594 5561 5335 4725 46 5 0 chrX 21664636 21665222 -155308918 + L1PA4 LINE L1 5564 6155 0 267 31 0 0 chrX 21665693 21665725 -155308415 + (TA)n Simple_repeat Simple_repeat 2 33 0 336 276 16 49 chrX 21666548 21666671 -155307469 + MIR SINE MIR 8 126 -136 1604 169 47 23 chrX 21667083 21667384 -155306756 + MSTC LTR MaLR 1 308 -120 596 167 0 0 chrX 21667383 21667473 -155306667 + 5S rRNA rRNA 1 90 -31 * 948 118 0 0 chrX 21667470 21667605 -155306535 + MSTC LTR MaLR 293 427 -1 27 49 0 0 chrX 21667852 21667893 -155306247 + AT_rich Low_complexity Low_complexity 1 41 0 313 321 95 23 chrX 21669567 21669769 -155304371 - MIR SINE MIR -2 260 36 884 251 143 101 chrX 21669801 21670495 -155303645 - MER20B DNA MER1_type -5 778 56 223 268 72 31 chrX 21670537 21670634 -155303506 + MIR SINE MIR 160 260 -2 248 261 45 34 chrX 21671818 21671906 -155302234 + MIR3 SINE MIR 110 198 -10 1516 226 69 67 chrX 21672593 21672657 -155301483 - MLT2B1 LTR ERVL -8 512 450 384 71 0 0 chrX 21672657 21672713 -155301427 + (TG)n Simple_repeat Simple_repeat 1 56 0 1516 226 69 67 chrX 21672713 21673158 -155300982 - MLT2B1 LTR ERVL -70 450 2 348 275 67 20 chrX 21673530 21673679 -155300461 + L1ME4a LINE L1 5713 5868 -253 225 271 42 88 chrX 21674174 21674436 -155299704 + L1ME4a LINE L1 5870 6119 -2 191 250 0 0 chrX 21674871 21674911 -155299229 - MIR3 SINE MIR -1 207 168 196 378 51 0 chrX 21677372 21677470 -155296670 - L2 LINE L2 -18 3254 3152 948 207 6 6 chrX 21677524 21677693 -155296447 - MER5A DNA MER1_type 0 189 21 282 326 45 0 chrX 21678288 21678377 -155295763 - MIR SINE MIR -66 142 50 282 252 282 0 chrX 21678432 21678563 -155295577 - HsTC2 DNA Tc2 -1710 188 21 1173 137 5 9 chrX 21678563 21678775 -155295365 + L1MA4 LINE L1 6084 6294 -6 1838 300 130 30 chrX 21680161 21680554 -155293586 + L2 LINE L2 1800 2152 -1161 1875 154 0 23 chrX 21680554 21680859 -155293281 - AluJb SINE Alu -14 298 1 1838 300 130 30 chrX 21680859 21681836 -155292304 + L2 LINE L2 2152 3312 -1 323 252 12 54 chrX 21681856 21681996 -155292144 + MER34B LTR ERV1 31 245 -406 310 264 121 23 chrX 21682192 21682366 -155291774 + MER34 LTR ERV1 352 542 0 737 253 6 0 chrX 21683855 21684013 -155290127 + MER5A DNA MER1_type 31 189 0 1916 142 0 82 chrX 21684021 21684388 -155289752 - MER1B DNA MER1_type 0 337 1 1482 140 20 16 chrX 21684413 21684663 -155289477 + AluSx SINE Alu 50 300 -12 354 358 54 0 chrX 21685237 21685385 -155288755 + L2 LINE L2 3116 3271 -1 783 213 31 0 chrX 21685567 21685727 -155288413 + MER5A DNA MER1_type 1 165 -24 286 304 40 61 chrX 21685599 21685747 -155288393 - MER5A DNA MER1_type -23 166 22 * 286 237 31 41 chrX 21685778 21685875 -155288265 - MER5A DNA MER1_type -56 133 38 339 25 0 0 chrX 21686937 21686977 -155287163 + (TA)n Simple_repeat Simple_repeat 2 41 0 247 294 39 106 chrX 21687523 21687703 -155286437 - MER5A DNA MER1_type 0 189 22 309 304 40 32 chrX 21687740 21687865 -155286275 - MER5A DNA MER1_type -63 126 1 190 217 43 72 chrX 21687957 21688026 -155286114 + L2 LINE L2 3205 3271 -1 423 0 0 0 chrX 21688512 21688559 -155285581 + (TA)n Simple_repeat Simple_repeat 1 47 0 745 173 98 17 chrX 21688621 21688794 -155285346 - MER5A DNA MER1_type -2 187 1 182 379 131 20 chrX 21688956 21689109 -155285031 + L2 LINE L2 3092 3261 -11 215 301 0 41 chrX 21689353 21689426 -155284714 - L2 LINE L2 0 3313 3244 623 346 29 8 chrX 21689453 21689696 -155284444 - MIR SINE MIR -13 249 2 961 324 106 50 chrX 21689879 21690982 -155283158 - L2 LINE L2 0 3313 2140 274 304 113 9 chrX 21691053 21691168 -155282972 - MIR3 SINE MIR -50 158 32 668 205 26 0 chrX 21691192 21691309 -155282831 + MER5A DNA MER1_type 7 126 -63 3339 150 77 11 chrX 21692371 21692991 -155281149 + MER67B LTR ERV1 1 661 0 21 0 0 0 chrX 21693773 21693794 -155280346 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 21694992 21695022 -155279118 + (TA)n Simple_repeat Simple_repeat 2 31 0 390 42 0 0 chrX 21695023 21695071 -155279069 + (GA)n Simple_repeat Simple_repeat 1 48 0 709 311 102 38 chrX 21695777 21696217 -155277923 + L2 LINE L2 2700 3175 -138 2210 96 0 0 chrX 21696217 21696530 -155277610 + AluSx SINE Alu 2 314 0 709 311 102 38 chrX 21696530 21696674 -155277466 + L2 LINE L2 3175 3308 -5 252 357 36 18 chrX 21696672 21696784 -155277356 - MIR SINE MIR -86 176 63 * 190 255 174 31 chrX 21697143 21697241 -155276899 + MIR SINE MIR 32 143 -65 23 68 0 0 chrX 21697431 21697475 -155276665 + AT_rich Low_complexity Low_complexity 1 44 0 311 296 23 73 chrX 21697673 21697856 -155276284 - MIR SINE MIR -51 157 21 1538 289 80 34 chrX 21698246 21698296 -155275844 + L2 LINE L2 2019 2065 -1248 339 25 0 0 chrX 21698296 21698336 -155275804 + (TTTTC)n Simple_repeat Simple_repeat 2 41 0 2040 118 4 7 chrX 21698338 21698618 -155275522 - AluSg SINE Alu -31 279 1 1538 289 80 34 chrX 21698618 21699633 -155274507 + L2 LINE L2 2065 3308 -5 1601 161 47 7 chrX 21700766 21701040 -155273100 + AluJb SINE Alu 5 289 -23 378 0 0 0 chrX 21701866 21701908 -155272232 + (CAAAA)n Simple_repeat Simple_repeat 3 44 0 1865 30 0 13 chrX 21702103 21702334 -155271806 + L1PA3 LINE L1 5928 6155 0 419 123 14 0 chrX 21702924 21702997 -155271143 - L1PA16 LINE L1 -2 6164 6091 321 195 13 39 chrX 21703475 21703552 -155270588 - MER20 DNA MER1_type -144 75 1 28 0 0 0 chrX 21703842 21703870 -155270270 + AT_rich Low_complexity Low_complexity 1 28 0 411 21 0 0 chrX 21705739 21705787 -155268353 + (TG)n Simple_repeat Simple_repeat 2 49 0 2298 82 0 0 chrX 21706062 21706343 -155267797 - AluSc SINE Alu -28 281 1 904 221 22 49 chrX 21707088 21707314 -155266826 + MER58A DNA MER1_type 4 223 -1 821 137 143 28 chrX 21707839 21708021 -155266119 + LTR12 LTR ERV1 1 203 -511 364 260 10 0 chrX 21708090 21708190 -155265950 + LTR30 LTR ERV1 524 624 -98 734 173 23 15 chrX 21708190 21708323 -155265817 + LTR12 LTR ERV1 359 492 -222 446 355 158 8 chrX 21708651 21709051 -155265089 + L2 LINE L2 2850 3309 -4 393 326 81 92 chrX 21709448 21710165 -155263975 + L2 LINE L2 2257 2965 -349 246 81 0 0 chrX 21710282 21710319 -155263821 + (TC)n Simple_repeat Simple_repeat 1 37 0 257 261 9 117 chrX 21710373 21710484 -155263656 + L2 LINE L2 3172 3270 -2 1622 210 26 47 chrX 21711009 21711499 -155262641 - L1MA9 LINE L1 -38 6274 5795 306 0 0 0 chrX 21711503 21711537 -155262603 + (TG)n Simple_repeat Simple_repeat 2 35 0 411 21 0 0 chrX 21711613 21711661 -155262479 + (TC)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 21711718 21711747 -155262393 + AT_rich Low_complexity Low_complexity 1 29 0 2262 132 8 48 chrX 21712309 21712688 -155261452 + THE1B LTR MaLR 1 364 0 2254 116 22 24 chrX 21713268 21713639 -155260501 - THE1C LTR MaLR -2 373 4 192 298 60 86 chrX 21714202 21714353 -155259787 + MIR SINE MIR 88 234 -28 198 282 24 35 chrX 21714546 21714631 -155259509 - MIR SINE MIR -144 118 35 756 251 29 18 chrX 21715362 21715668 -155258472 + L1MD3 LINE L1 6050 7982 -13 2323 103 17 3 chrX 21716434 21716784 -155257356 - THE1A LTR MaLR 0 355 1 22 35 0 0 chrX 21716985 21717014 -155257126 + AT_rich Low_complexity Low_complexity 1 29 0 2099 122 0 34 chrX 21717014 21717335 -155256805 + AluSx SINE Alu 1 310 -2 24 32 0 0 chrX 21717486 21717517 -155256623 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chrX 21717544 21717583 -155256557 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 21717629 21717651 -155256489 + AT_rich Low_complexity Low_complexity 1 22 0 360 262 43 35 chrX 21717781 21717922 -155256218 - L2 LINE L2 0 3313 3172 212 318 9 73 chrX 21718944 21719054 -155255086 + L2 LINE L2 3206 3308 -5 2425 48 0 26 chrX 21719400 21719709 -155254431 - AluY SINE Alu -10 301 1 2089 106 0 3 chrX 21720610 21720892 -155253248 + AluSq SINE Alu 1 281 -32 198 71 0 0 chrX 21720892 21720920 -155253220 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 241 244 24 24 chrX 21721822 21721904 -155252236 + MIR SINE MIR 131 212 -50 189 119 68 0 chrX 21722117 21722176 -155251964 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 260 131 0 33 chrX 21722182 21722243 -155251897 + (GGGAGA)n Simple_repeat Simple_repeat 2 60 0 237 159 0 0 chrX 21722253 21722297 -155251843 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 485 259 171 0 chrX 21722333 21722491 -155251649 + MIR SINE MIR 78 262 0 420 314 108 5 chrX 21722575 21722760 -155251380 - MIR SINE MIR 0 262 59 265 222 11 22 chrX 21722955 21723045 -155251095 - L1MC5 LINE L1 -76 7885 7797 396 330 80 35 chrX 21723639 21723730 -155250410 + MIR SINE MIR 7 92 -170 2418 46 13 3 chrX 21723730 21724033 -155250107 - AluY SINE Alu -5 306 1 396 330 80 35 chrX 21724033 21724141 -155249999 + MIR SINE MIR 92 215 -47 458 320 19 0 chrX 21725199 21725355 -155248785 - MIR SINE MIR 0 262 104 432 331 36 27 chrX 21725603 21726047 -155248093 - LTR16C LTR ERVL 0 491 1 199 261 29 14 chrX 21726089 21726158 -155247982 + MIR SINE MIR 174 243 -19 229 151 132 0 chrX 21726169 21726222 -155247918 + MIR SINE MIR 172 231 -31 24 67 0 0 chrX 21727020 21727065 -155247075 + AT_rich Low_complexity Low_complexity 1 45 0 28 29 0 0 chrX 21730189 21730224 -155243916 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 21730917 21730938 -155243202 + AT_rich Low_complexity Low_complexity 1 21 0 248 235 212 0 chrX 21731597 21731682 -155242458 + L2 LINE L2 3197 3299 -14 396 0 0 0 chrX 21731830 21731874 -155242266 + (CA)n Simple_repeat Simple_repeat 2 45 0 2283 99 0 0 chrX 21731958 21732250 -155241890 + AluSc SINE Alu 3 294 -15 345 47 0 0 chrX 21732488 21732531 -155241609 + (CA)n Simple_repeat Simple_repeat 2 44 0 424 288 123 6 chrX 21733913 21734083 -155240057 + MIR SINE MIR 22 211 -51 768 196 0 0 chrX 21734109 21734242 -155239898 + FLAM_A SINE Alu 1 133 0 384 223 85 0 chrX 21734305 21734399 -155239741 - MER5A DNA MER1_type -77 112 11 180 374 48 41 chrX 21734495 21734642 -155239498 - L2 LINE L2 -4 3268 3121 1497 231 65 18 chrX 21734651 21735097 -155239043 + MER110A LTR ERV1 2 468 0 595 241 146 6 chrX 21735674 21735832 -155238308 + MER5A DNA MER1_type 9 188 -1 324 253 0 40 chrX 21735856 21735931 -155238209 - L2 LINE L2 -556 2758 2687 2070 118 0 40 chrX 21736067 21736388 -155237752 - AluSx SINE Alu 0 312 5 324 394 97 5 chrX 21737236 21737452 -155236688 + MIR SINE MIR 21 256 -6 333 258 55 10 chrX 21737700 21737836 -155236304 - MIR SINE MIR -7 201 48 1304 75 0 0 chrX 21737878 21738051 -155236089 + L1PA8 LINE L1 6000 6172 0 1756 99 107 33 chrX 21738448 21738720 -155235420 - AluSp SINE Alu -4 309 18 1149 300 77 11 chrX 21738775 21739241 -155234899 + L2 LINE L2 2201 2697 -617 1142 225 51 33 chrX 21739260 21739593 -155234547 + L1MD2 LINE L1 5911 6249 -110 638 219 36 42 chrX 21739582 21739774 -155234366 + L1MD2 LINE L1 6159 6349 -10 * 504 280 32 0 chrX 21739798 21739923 -155234217 + L2 LINE L2 2926 3054 -259 409 246 26 0 chrX 21739929 21740036 -155234104 + AluJ/FLAM SINE Alu 1 88 -214 10240 119 34 5 chrX 21740036 21741564 -155232576 + THE1C-int LTR MaLR 8 1580 0 2212 119 13 46 chrX 21741564 21741952 -155232188 + THE1C LTR MaLR 1 375 0 628 261 94 55 chrX 21741952 21742030 -155232110 + L2 LINE L2 2995 3068 -245 1626 195 3 13 chrX 21742030 21742343 -155231797 + AluJo SINE Alu 1 310 -2 628 261 94 55 chrX 21742343 21742571 -155231569 + L2 LINE L2 3068 3313 0 420 263 8 30 chrX 21743235 21743368 -155230772 + MIR SINE MIR 67 196 -66 180 97 0 0 chrX 21744398 21744429 -155229711 + (A)n Simple_repeat Simple_repeat 1 31 0 2086 126 0 3 chrX 21746046 21746332 -155227808 + AluSx SINE Alu 1 285 -27 30 0 0 0 chrX 21746332 21746362 -155227778 + AT_rich Low_complexity Low_complexity 1 30 0 241 254 56 42 chrX 21746391 21746462 -155227678 + LTR33A LTR ERVL 347 418 -105 180 247 226 32 chrX 21748655 21748748 -155225392 - MIR SINE MIR -120 142 32 345 82 0 0 chrX 21749183 21749232 -155224908 + (TA)n Simple_repeat Simple_repeat 1 49 0 409 270 43 31 chrX 21749552 21749715 -155224425 - Charlie2 DNA MER1_type 0 2862 2698 2145 233 61 5 chrX 21749720 21750324 -155223816 - Charlie2 DNA MER1_type -360 2502 1865 710 211 51 120 chrX 21750342 21750617 -155223523 - Charlie2 DNA MER1_type -2526 256 1 280 286 66 0 chrX 21750907 21750998 -155223142 + MIR SINE MIR 35 131 -131 279 333 10 10 chrX 21750998 21751094 -155223046 - MER5B DNA MER1_type 0 178 83 345 350 51 45 chrX 21753766 21754080 -155220060 - L1 LINE L1 -835 5311 4996 227 345 9 0 chrX 21754197 21754313 -155219827 - L1 LINE L1 -1310 4836 4720 763 209 0 13 chrX 21755041 21755194 -155218946 + MER58B DNA MER1_type 176 326 -15 321 353 18 50 chrX 21755229 21755447 -155218693 - MIR SINE MIR -26 236 26 594 41 0 0 chrX 21755514 21755587 -155218553 - L1PA5 LINE L1 -5 6149 6077 892 212 86 0 chrX 21755661 21755859 -155218281 + MER20 DNA MER1_type 1 215 -4 345 316 53 8 chrX 21755944 21756077 -155218063 + L2 LINE L2 3175 3313 0 207 0 0 0 chrX 21756180 21756203 -155217937 + (TA)n Simple_repeat Simple_repeat 1 23 0 760 337 67 22 chrX 21756578 21756982 -155217158 - L3 LINE CR1 -3 1574 1153 319 320 39 0 chrX 21757112 21757215 -155216925 - L2 LINE L2 -10 3303 3197 1705 178 33 6 chrX 21757218 21757549 -155216591 + MER2 DNA MER2_type 1 340 -5 2471 138 31 0 chrX 21758501 21758915 -155215225 + MSTA LTR MaLR 2 428 0 1149 222 61 33 chrX 21759812 21760173 -155213967 - L1ME2 LINE L1 -1 6163 5793 561 340 115 37 chrX 21760288 21761046 -155213094 - L2 LINE L2 -340 2974 2158 2474 55 0 7 chrX 21762322 21762631 -155211509 + AluY SINE Alu 1 307 -4 1508 115 0 21 chrX 21762794 21763037 -155211103 - L1MA2 LINE L1 0 6304 6067 22 56 0 0 chrX 21763295 21763331 -155210809 + AT_rich Low_complexity Low_complexity 1 36 0 1308 134 79 12 chrX 21763339 21763593 -155210547 - L1MA8 LINE L1 -10 6281 6011 778 196 86 121 chrX 21763903 21764356 -155209784 + LTR37B LTR ERV1 6 442 -26 1625 189 27 0 chrX 21765215 21765385 -155208755 - AluSx SINE Alu -7 305 122 207 0 0 0 chrX 21765385 21765408 -155208732 + (TG)n Simple_repeat Simple_repeat 2 24 0 1625 189 27 0 chrX 21765408 21765534 -155208606 - AluSx SINE Alu -190 122 1 736 232 131 0 chrX 21766187 21766446 -155207694 - MER33 DNA MER1_type -31 293 1 1704 154 67 26 chrX 21766638 21766950 -155207190 - MER44D DNA MER2_type 0 609 15 267 257 43 14 chrX 21767611 21767681 -155206459 + L2 LINE L2 3234 3305 -8 2335 92 0 0 chrX 21767925 21768228 -155205912 - AluSc SINE Alu -6 303 1 25 0 0 0 chrX 21769497 21769522 -155204618 + AT_rich Low_complexity Low_complexity 1 25 0 210 353 0 15 chrX 21769781 21769849 -155204291 + MIR SINE MIR 49 115 -147 1843 142 153 24 chrX 21770182 21770555 -155203585 - MSTB LTR MaLR 0 426 6 414 0 0 0 chrX 21770555 21770601 -155203539 + (TC)n Simple_repeat Simple_repeat 1 46 0 393 22 0 0 chrX 21770600 21770646 -155203494 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 306 209 132 44 chrX 21771216 21771307 -155202833 + L2 LINE L2 3171 3269 -3 240 111 0 0 chrX 21771956 21772001 -155202139 + (ATG)n Simple_repeat Simple_repeat 3 47 0 1175 214 165 26 chrX 21772740 21773086 -155201054 + MSTD LTR MaLR 1 394 -2 293 276 86 52 chrX 21774273 21774389 -155199751 + L2 LINE L2 3146 3265 -7 311 287 83 120 chrX 21774609 21775052 -155199088 - L2 LINE L2 0 3313 2887 274 229 136 34 chrX 21776298 21776416 -155197724 + LTR16C LTR ERVL 1 130 -361 415 324 183 14 chrX 21777993 21778206 -155195934 - MIR SINE MIR -11 251 3 2051 118 21 0 chrX 21779283 21779572 -155194568 + AluSq SINE Alu 1 295 -18 547 198 29 150 chrX 21779706 21779913 -155194227 + L1MEc LINE L1 168 349 -6214 3776 217 36 19 chrX 21779924 21780863 -155193277 + L1MEc LINE L1 466 1420 -5143 305 298 25 0 chrX 21780876 21780997 -155193143 + L1MEc LINE L1 1317 1440 -4944 303 306 12 0 chrX 21780999 21781084 -155193056 + LTR16A LTR ERVL 365 450 0 21 36 0 0 chrX 21781188 21781216 -155192924 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 21782969 21782990 -155191150 + AT_rich Low_complexity Low_complexity 1 21 0 1145 169 16 16 chrX 21783135 21783383 -155190757 + L1MA6 LINE L1 6050 6297 -3 279 189 27 0 chrX 21783383 21783457 -155190683 - L1MC5 LINE L1 -272 7689 7614 557 198 23 119 chrX 21783729 21783906 -155190234 + MER5B DNA MER1_type 19 178 0 483 282 64 50 chrX 21784206 21784426 -155189714 - MIR SINE MIR -6 256 34 26 0 0 0 chrX 21785103 21785129 -155189011 + AT_rich Low_complexity Low_complexity 1 26 0 275 324 0 0 chrX 21785601 21785675 -155188465 + MER115 DNA AcHobo 369 442 -251 23 0 0 0 chrX 21786230 21786253 -155187887 + AT_rich Low_complexity Low_complexity 1 23 0 215 278 0 19 chrX 21787056 21787110 -155187030 + MIR SINE MIR 154 206 -56 22 35 0 0 chrX 21787126 21787155 -155186985 + AT_rich Low_complexity Low_complexity 1 29 0 3973 132 4 45 chrX 21787159 21787842 -155186298 - L1PB3 LINE L1 -9 6145 5491 1339 214 21 0 chrX 21787842 21788173 -155185967 + L1 LINE L1 2962 3299 -2847 1094 220 101 46 chrX 21788686 21789032 -155185108 - MLT1A1 LTR MaLR 0 365 1 1049 272 23 66 chrX 21789033 21789470 -155184670 - L1ME LINE L1 -406 5764 5347 537 303 26 24 chrX 21789610 21789990 -155184150 - L1ME LINE L1 -804 5342 4962 33 0 0 0 chrX 21790154 21790187 -155183953 + AT_rich Low_complexity Low_complexity 1 33 0 284 335 155 42 chrX 21790695 21790747 -155183393 + L2 LINE L2 2172 2217 -1097 707 289 28 5 chrX 21790747 21790965 -155183175 - MER58A DNA MER1_type 0 224 2 284 335 155 42 chrX 21790965 21791113 -155183027 + L2 LINE L2 2217 2347 -967 2428 132 43 14 chrX 21791113 21791529 -155182611 + MSTA LTR MaLR 1 428 0 284 335 155 42 chrX 21791529 21791688 -155182452 + L2 LINE L2 2347 2573 -741 347 401 29 17 chrX 21792020 21792192 -155181948 + L2 LINE L2 3099 3272 0 271 317 42 17 chrX 21792228 21792348 -155181792 + MIR SINE MIR 66 188 -74 378 61 0 0 chrX 21792855 21792904 -155181236 + (TA)n Simple_repeat Simple_repeat 1 49 0 2148 154 11 5 chrX 21792939 21793309 -155180831 + L1PB4 LINE L1 5785 6156 0 340 295 23 23 chrX 21794473 21794602 -155179538 - MIR SINE MIR -30 232 104 1081 176 33 108 chrX 21795179 21795270 -155178870 - L1MA10 LINE L1 0 6334 6238 405 0 0 0 chrX 21795270 21795315 -155178825 + (TA)n Simple_repeat Simple_repeat 2 46 0 1081 176 33 108 chrX 21795315 21795558 -155178582 - L1MA10 LINE L1 -96 6238 6025 2359 52 0 3 chrX 21795813 21796133 -155178007 - AluY SINE Alu 0 319 1 500 301 107 15 chrX 21796227 21796433 -155177707 + MIR SINE MIR 21 245 -17 238 397 33 8 chrX 21798624 21798745 -155175395 - L2 LINE L2 0 3272 3149 367 310 54 23 chrX 21798779 21798908 -155175232 + LTR16C LTR ERVL 1 133 -358 1969 130 10 0 chrX 21799177 21799518 -155174622 - AluSp SINE Alu 0 313 1 405 250 152 0 chrX 21800009 21800121 -155174019 - MER5B DNA MER1_type -1 177 49 227 333 162 0 chrX 21800433 21800544 -155173596 - MIR SINE MIR -86 176 48 3387 136 4 9 chrX 21800564 21801094 -155173046 - MER1A DNA MER1_type 0 527 1 259 279 136 15 chrX 21801872 21802051 -155172089 - L1ME LINE L1 -536 5634 5411 2149 104 84 6 chrX 21802051 21802386 -155171754 + THE1B LTR MaLR 2 362 -2 259 279 136 15 chrX 21802386 21802471 -155171669 - L1ME LINE L1 -759 5411 5338 458 265 124 53 chrX 21802491 21802846 -155171294 - L1ME LINE L1 -823 5323 4944 563 299 71 0 chrX 21802918 21803115 -155171025 - HAL1 LINE L1 -547 1960 1750 795 301 33 64 chrX 21803124 21803543 -155170597 + MLT1I LTR MaLR 4 409 0 234 259 144 36 chrX 21803576 21803715 -155170425 - HAL1 LINE L1 -760 1747 1594 1209 242 102 71 chrX 21803715 21804253 -155169887 - MLT1F1 LTR MaLR 0 567 13 1367 231 84 109 chrX 21804284 21804607 -155169533 - HAL1 LINE L1 -937 1570 1241 667 277 79 0 chrX 21804607 21804809 -155169331 - MER20 DNA MER1_type 0 219 2 1367 231 84 109 chrX 21804809 21804935 -155169205 - HAL1 LINE L1 -1266 1241 1113 1823 153 0 19 chrX 21804935 21805256 -155168884 - L1MC1 LINE L1 -1 6332 6018 498 228 0 0 chrX 21805258 21805372 -155168768 + L1PB4 LINE L1 6041 6154 -2 1367 231 84 109 chrX 21805372 21805818 -155168322 - HAL1 LINE L1 -1395 1112 693 1874 171 53 4 chrX 21805818 21806164 -155167976 + MLT1A1 LTR MaLR 1 426 -2 563 319 55 44 chrX 21806237 21806601 -155167539 - HAL1 LINE L1 -1902 605 238 392 177 8 31 chrX 21808503 21808633 -155165507 + GA-rich Low_complexity Low_complexity 4 130 0 243 146 0 0 chrX 21808643 21808684 -155165456 + (CAGG)n Simple_repeat Simple_repeat 1 41 0 957 208 140 0 chrX 21809081 21809346 -155164794 + MER63 DNA MER1_type 717 1018 -44 17529 28 0 0 chrX 21809544 21812399 -155161741 - L1PA2 LINE L1 -1 6154 3304 215 257 191 57 chrX 21812562 21812667 -155161473 + MER5B DNA MER1_type 60 178 0 369 238 29 91 chrX 21812716 21812926 -155161214 - L1MC5 LINE L1 -48 7913 7717 253 318 95 91 chrX 21813181 21813477 -155160663 + L2 LINE L2 2974 3270 -2 484 248 62 16 chrX 21815126 21815255 -155158885 - MIR SINE MIR -111 151 17 579 316 197 44 chrX 21816333 21816447 -155157693 + L2 LINE L2 2009 2104 -1209 2630 55 3 6 chrX 21816447 21816792 -155157348 + L1PA7 LINE L1 5811 6154 0 579 316 197 44 chrX 21816792 21817276 -155156864 + L2 LINE L2 2104 2512 -801 1438 182 0 84 chrX 21817276 21817611 -155156529 + AluJo SINE Alu 2 308 -4 579 316 197 44 chrX 21817611 21818072 -155156068 + L2 LINE L2 2512 3245 -68 1029 119 0 0 chrX 21818171 21818464 -155155676 + (TA)n Simple_repeat Simple_repeat 2 294 0 382 260 6 0 chrX 21818466 21818578 -155155562 + L1MC4 LINE L1 6613 6705 -1337 2305 99 0 0 chrX 21819213 21819507 -155154633 - AluSg SINE Alu -14 296 3 2156 126 0 0 chrX 21819627 21819929 -155154211 - AluSx SINE Alu -10 302 1 2136 173 154 21 chrX 21820417 21820944 -155153196 - L1MB3 LINE L1 -1 6182 5586 948 181 0 44 chrX 21820954 21821136 -155153004 + MER58B DNA MER1_type 168 341 0 5765 100 6 36 chrX 21821629 21822535 -155151605 - L1P LINE L1 -3553 2593 1716 7338 110 6 0 chrX 21822538 21824411 -155149729 + L1PA7 LINE L1 4276 6152 -2 24 0 0 0 chrX 21825133 21825157 -155148983 + AT_rich Low_complexity Low_complexity 1 24 0 350 251 90 33 chrX 21825811 21825986 -155148154 + MLT1J2 LTR MaLR 246 432 -14 31 0 0 0 chrX 21827498 21827529 -155146611 + AT_rich Low_complexity Low_complexity 1 31 0 385 239 15 45 chrX 21827819 21827953 -155146187 + L1ME1 LINE L1 5872 6001 -165 638 203 14 0 chrX 21827972 21828120 -155146020 + L1MA10 LINE L1 6185 6334 0 882 341 36 30 chrX 21828214 21828654 -155145486 + LTR16A LTR ERVL 2 444 -6 25 0 0 0 chrX 21829449 21829474 -155144666 + AT_rich Low_complexity Low_complexity 1 25 0 2478 115 13 11 chrX 21829610 21829984 -155144156 + THE1C LTR MaLR 1 375 0 9785 109 28 63 chrX 21829984 21831622 -155142518 + THE1C-int LTR MaLR 1 1580 0 2576 104 13 13 chrX 21831622 21831997 -155142143 + THE1C LTR MaLR 1 375 0 1377 278 23 45 chrX 21833781 21834252 -155139888 + LTR16C LTR ERVL 31 491 0 4047 159 20 20 chrX 21834446 21835157 -155138983 + MER50 LTR ERV1 1 711 -23 310 364 21 7 chrX 21836144 21836284 -155137856 + MLT1J LTR MaLR 100 241 -308 222 118 0 0 chrX 21837212 21837246 -155136894 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 281 268 235 20 chrX 21838191 21838344 -155135796 + MIR SINE MIR 48 233 -29 249 33 0 0 chrX 21838866 21838896 -155135244 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 565 239 60 0 chrX 21838899 21839033 -155135107 + FLAM_A SINE Alu 1 142 0 753 246 107 48 chrX 21839062 21839351 -155134789 + MLT1J LTR MaLR 9 314 -197 366 304 9 0 chrX 21839413 21839528 -155134612 + MLT1J LTR MaLR 394 509 -2 21 0 0 0 chrX 21841140 21841161 -155132979 + AT_rich Low_complexity Low_complexity 1 21 0 3920 223 10 12 chrX 21841380 21842199 -155131941 + L1MA2 LINE L1 12 828 -6737 1961 158 0 0 chrX 21842228 21842532 -155131608 + AluSx SINE Alu 3 306 -6 185 94 31 0 chrX 21842537 21842569 -155131571 + A-rich Low_complexity Low_complexity 3 35 0 5671 206 19 30 chrX 21842571 21843963 -155130177 + L1MA2 LINE L1 3598 4973 -2592 1679 25 0 0 chrX 21844017 21844259 -155129881 + L1P1 LINE L1 5190 5431 -724 * 6760 128 17 5 chrX 21844249 21845541 -155128599 + L1MA2 LINE L1 6405 7713 -10 586 127 0 66 chrX 21845595 21845776 -155128364 + (TA)n Simple_repeat Simple_repeat 2 170 0 821 246 70 18 chrX 21847023 21847307 -155126833 - L1ME3A LINE L1 -9 6161 5863 287 349 55 0 chrX 21848344 21848453 -155125687 + MIR3 SINE MIR 73 187 -21 352 286 27 9 chrX 21848501 21848613 -155125527 + MLT1I LTR MaLR 20 133 -276 249 307 35 44 chrX 21848790 21848904 -155125236 + MLT1J LTR MaLR 421 533 -16 966 261 9 0 chrX 21849250 21849472 -155124668 + MER58A DNA MER1_type 1 224 0 672 308 42 8 chrX 21850114 21850351 -155123789 - MIR SINE MIR -3 259 15 679 203 47 14 chrX 21851009 21851157 -155122983 - FRAM SINE Alu -15 161 9 1976 122 4 0 chrX 21851283 21851584 -155122556 - AluSx SINE Alu 0 305 4 261 306 126 9 chrX 21851672 21851783 -155122357 - L2 LINE L2 -23 3290 3167 190 289 0 19 chrX 21851955 21852007 -155122133 - L2 LINE L2 -226 3046 2996 2141 263 138 40 chrX 21853435 21854269 -155119871 + L2 LINE L2 1897 2812 -502 4871 86 43 34 chrX 21854269 21855004 -155119136 + MER41B-int LTR ERV1 5205 5946 0 3525 117 13 9 chrX 21855004 21855550 -155118590 + MER41B LTR ERV1 1 548 -87 787 330 119 25 chrX 21855555 21856052 -155118088 + L2 LINE L2 2771 3313 0 563 232 84 71 chrX 21856804 21857101 -155117039 - L1MC5 LINE L1 -50 7911 7611 260 272 60 86 chrX 21857132 21857400 -155116740 - L2 LINE L2 -793 2521 2261 2111 59 0 26 chrX 21857886 21858159 -155115981 - AluY SINE Alu -8 303 38 809 114 9 0 chrX 21859306 21859420 -155114720 + L1PA16 LINE L1 6033 6147 -19 211 194 0 0 chrX 21860002 21860038 -155114102 + (TG)n Simple_repeat Simple_repeat 2 37 0 2144 104 3 0 chrX 21861699 21861987 -155112153 + AluSq SINE Alu 1 289 -24 1903 283 66 37 chrX 21862771 21862825 -155111315 - L2 LINE L2 0 3313 3262 446 0 19 0 chrX 21862825 21862879 -155111261 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 2087 93 4 4 chrX 21862881 21863161 -155110979 - AluSg SINE Alu -30 280 1 1903 283 66 37 chrX 21863161 21864170 -155109970 - L2 LINE L2 -51 3262 2224 712 305 61 4 chrX 21865172 21865418 -155108722 + MIR SINE MIR 1 260 -2 249 119 0 0 chrX 21866813 21866855 -155107285 + (A)n Simple_repeat Simple_repeat 1 42 0 1748 173 106 3 chrX 21867679 21868008 -155106132 + MER47A DNA MER2_type 1 363 -3 201 301 41 68 chrX 21868358 21868504 -155105636 - MIR SINE MIR -37 225 84 331 308 11 0 chrX 21868895 21868986 -155105154 - L2 LINE L2 0 3313 3222 1178 285 98 34 chrX 21871098 21871856 -155102284 + L2 LINE L2 2513 3313 0 202 235 0 19 chrX 21872211 21872321 -155101819 + CT-rich Low_complexity Low_complexity 1 107 0 424 280 42 14 chrX 21872321 21872464 -155101676 - L1M4 LINE L1 -1984 4162 4016 616 342 112 14 chrX 21872707 21873128 -155101012 - LTR16C LTR ERVL 0 491 30 207 100 0 0 chrX 21873667 21873697 -155100443 + (TA)n Simple_repeat Simple_repeat 2 31 0 14444 91 34 0 chrX 21878217 21881119 -155093021 + L1PA7 LINE L1 3187 6154 0 309 177 135 21 chrX 21881460 21881556 -155092584 - L1MA1 LINE L1 -312 5990 5884 222 220 20 0 chrX 21884974 21885024 -155089116 + L2 LINE L2 3263 3313 0 277 259 59 0 chrX 21885386 21885471 -155088669 - MER103 DNA DNA -59 107 18 809 214 39 34 chrX 21885946 21886152 -155087988 - MER3 DNA MER1_type -1 208 2 180 0 0 0 chrX 21887255 21887275 -155086865 + (CAA)n Simple_repeat Simple_repeat 2 21 0 647 275 42 108 chrX 21887381 21887879 -155086261 + HAL1 LINE L1 903 1346 -1161 1494 188 7 14 chrX 21887879 21888189 -155085951 + AluJo SINE Alu 9 316 0 647 275 42 108 chrX 21888189 21888377 -155085763 + HAL1 LINE L1 1346 1545 -962 1829 186 21 3 chrX 21888590 21888928 -155085212 - MER2 DNA MER2_type 0 344 1 23 33 0 0 chrX 21889100 21889130 -155085010 + AT_rich Low_complexity Low_complexity 1 30 0 1911 127 22 6 chrX 21889564 21889886 -155084254 + L1MA4A LINE L1 5972 6298 -5 329 329 32 27 chrX 21890147 21890366 -155083774 + L1M4 LINE L1 2388 2607 -3539 753 87 0 0 chrX 21891396 21891499 -155082641 - AluSg/x SINE Alu -10 299 197 2086 117 0 7 chrX 21892217 21892516 -155081624 + AluSx SINE Alu 1 297 -15 180 179 0 0 chrX 21892600 21892639 -155081501 + CT-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chrX 21893515 21893537 -155080603 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 21894617 21894642 -155079498 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 603 326 51 43 chrX 21894650 21895064 -155079076 - L2 LINE L2 -20 3293 2877 247 208 0 0 chrX 21896328 21896376 -155077764 + L2 LINE L2 3224 3271 -1 495 316 146 40 chrX 21897785 21898007 -155076133 - L2 LINE L2 -1 3312 3115 299 25 25 0 chrX 21898007 21898047 -155076093 + (TG)n Simple_repeat Simple_repeat 1 41 0 495 316 146 40 chrX 21898047 21898432 -155075708 - L2 LINE L2 -198 3115 2646 344 299 84 13 chrX 21898509 21898663 -155075477 - L2 LINE L2 -1108 2206 2042 379 323 48 33 chrX 21898775 21899060 -155075080 - L1MEc LINE L1 -857 1719 1535 24 32 0 0 chrX 21899532 21899563 -155074577 + AT_rich Low_complexity Low_complexity 1 31 0 305 277 89 9 chrX 21900382 21900494 -155073646 - MER103 DNA DNA -45 121 1 333 323 71 13 chrX 21900539 21900694 -155073446 + MIR SINE MIR 49 212 -50 904 184 6 0 chrX 21900801 21900964 -155073176 - AluSg/x SINE Alu -19 293 130 446 157 63 0 chrX 21900964 21901123 -155073017 + (TA)n Simple_repeat Simple_repeat 2 170 0 314 131 62 35 chrX 21901216 21901361 -155072779 + (CATATA)n Simple_repeat Simple_repeat 2 150 0 214 194 83 0 chrX 21901367 21901439 -155072701 + (TA)n Simple_repeat Simple_repeat 1 78 0 413 206 71 24 chrX 21901475 21901645 -155072495 + (TA)n Simple_repeat Simple_repeat 1 178 0 318 217 50 50 chrX 21901649 21901810 -155072330 + (TATATG)n Simple_repeat Simple_repeat 2 162 0 628 112 20 0 chrX 21901810 21901908 -155072232 - AluS SINE Alu -213 100 1 1252 200 56 4 chrX 21903076 21903346 -155070794 + AluJb SINE Alu 5 288 -24 351 341 8 6 chrX 21904070 21904233 -155069907 + Tigger1 DNA MER2_type 967 1110 -1308 234 128 0 0 chrX 21905111 21905150 -155068990 + (CA)n Simple_repeat Simple_repeat 1 39 0 954 171 5 31 chrX 21905469 21905662 -155068478 + L1MA7 LINE L1 5886 6073 -218 248 351 52 47 chrX 21905950 21906141 -155067999 + MIR3 SINE MIR 1 156 -52 309 244 58 0 chrX 21906288 21906374 -155067766 - MIR SINE MIR -90 172 82 268 372 31 16 chrX 21907217 21907346 -155066794 + L2 LINE L2 3136 3266 -6 931 323 116 64 chrX 21908186 21909372 -155064768 + L2 LINE L2 1657 2904 -410 297 290 47 37 chrX 21909855 21909962 -155064178 + L2 LINE L2 3146 3253 -19 247 264 14 28 chrX 21910334 21910406 -155063734 + L2 LINE L2 3201 3271 -1 621 247 63 6 chrX 21911484 21911658 -155062482 - MER115 DNA AcHobo -1 692 509 812 76 21 14 chrX 21911658 21911802 -155062338 + (TTTC)n Simple_repeat Simple_repeat 3 147 0 2320 164 34 11 chrX 21911987 21912433 -155061707 - L1MB1 LINE L1 -1 6167 5712 271 315 159 41 chrX 21912439 21912746 -155061394 - MER115 DNA AcHobo -261 432 12 440 176 10 0 chrX 21912901 21913003 -155061137 + L1MA4 LINE L1 6196 6298 -2 377 320 128 53 chrX 21913957 21914372 -155059768 + MLT1K LTR MaLR 137 582 -6 343 321 46 0 chrX 21914430 21914539 -155059601 + MIR SINE MIR 3 116 -146 325 303 90 8 chrX 21914638 21914760 -155059380 - MIR SINE MIR -59 203 72 489 258 8 38 chrX 21914809 21914941 -155059199 + L2 LINE L2 3184 3311 -2 202 327 58 0 chrX 21914944 21914996 -155059144 - L2 LINE L2 -100 3172 3118 187 321 25 49 chrX 21915900 21915981 -155058159 + L2 LINE L2 1346 1424 -1890 190 322 28 28 chrX 21916227 21916343 -155057797 + MIR SINE MIR 36 152 -56 270 317 192 56 chrX 21916702 21917453 -155056687 + L2 LINE L2 1890 2742 -572 310 321 0 0 chrX 21917455 21917539 -155056601 + L2 LINE L2 3188 3271 -1 248 158 18 0 chrX 21918145 21918202 -155055938 + CT-rich Low_complexity Low_complexity 1 58 0 462 79 0 0 chrX 21918202 21918265 -155055875 + (TG)n Simple_repeat Simple_repeat 2 64 0 715 266 183 66 chrX 21918302 21918696 -155055444 + MLT1J2 LTR MaLR 1 440 -10 892 212 39 10 chrX 21919886 21920089 -155054051 + MER3 DNA MER1_type 1 209 0 213 154 0 0 chrX 21920582 21920621 -155053519 + (ATG)n Simple_repeat Simple_repeat 1 39 0 523 292 188 0 chrX 21920636 21920838 -155053302 - MIR SINE MIR -21 241 2 1917 141 3 7 chrX 21920901 21921206 -155052934 - AluSq SINE Alu -9 304 1 2629 128 59 15 chrX 21921307 21921782 -155052358 - L1PA16 LINE L1 0 6166 5671 21 0 0 0 chrX 21921881 21921902 -155052238 + AT_rich Low_complexity Low_complexity 1 21 0 194 305 85 25 chrX 21922145 21922263 -155051877 - MIR SINE MIR -72 190 66 2281 92 0 7 chrX 21922278 21922583 -155051557 + AluSc SINE Alu 1 303 -6 1502 181 42 0 chrX 21923547 21923856 -155050284 - MER33 DNA MER1_type -2 322 1 471 253 172 14 chrX 21924081 21924377 -155049763 - L1ME3A LINE L1 -219 5951 5609 1409 203 84 26 chrX 21924666 21925011 -155049129 - MLT1B LTR MaLR -25 365 1 269 356 144 0 chrX 21927314 21927432 -155046708 + L2 LINE L2 3138 3272 0 234 320 134 0 chrX 21928581 21928678 -155045462 - L2 LINE L2 -5 3308 3199 695 186 73 40 chrX 21929832 21930009 -155044131 + MER5A DNA MER1_type 2 184 -5 * 750 269 11 6 chrX 21930000 21930175 -155043965 + MER5A DNA MER1_type 8 183 -6 720 246 11 11 chrX 21930191 21930366 -155043774 + MER5B DNA MER1_type 4 178 0 355 274 184 18 chrX 21930715 21930883 -155043257 - MIR SINE MIR 0 262 67 273 295 57 33 chrX 21931795 21931917 -155042223 - L2 LINE L2 -2 3311 3187 2273 111 7 0 chrX 21932023 21932330 -155041810 + AluSg SINE Alu 1 309 -1 223 407 0 0 chrX 21932354 21932462 -155041678 - L2 LINE L2 -216 3056 2949 371 300 9 9 chrX 21932558 21932668 -155041472 - MER94 DNA DNA -5 129 20 200 375 80 40 chrX 21933234 21933458 -155040682 - L2 LINE L2 -642 2672 2440 776 295 36 65 chrX 21933529 21933976 -155040164 - LTR33A LTR ERVL -32 491 58 1021 221 14 5 chrX 21934931 21935148 -155038992 + MER63B DNA MER1_type 1 219 -217 432 279 88 72 chrX 21935257 21935508 -155038632 - MIR SINE MIR -5 257 3 436 366 58 0 chrX 21936914 21937086 -155037054 + MIR SINE MIR 81 262 0 1218 231 116 31 chrX 21937900 21938159 -155035981 - MLT1C LTR MaLR -7 460 224 252 0 0 0 chrX 21938159 21938187 -155035953 + (TTA)n Simple_repeat Simple_repeat 3 30 0 3676 30 0 5 chrX 21938187 21938625 -155035515 - L1PA3 LINE L1 -18 6137 5702 1218 231 116 31 chrX 21938625 21938788 -155035352 - MLT1C LTR MaLR -242 225 1 378 295 115 38 chrX 21941192 21941375 -155032765 + MIR SINE MIR 5 201 -61 240 359 69 30 chrX 21942155 21942286 -155031854 - MIR3 SINE MIR -21 187 52 1046 202 10 10 chrX 21944118 21944321 -155029819 - L1ME1 LINE L1 0 6166 5964 784 161 0 0 chrX 21944566 21944696 -155029444 + MER3 DNA MER1_type 80 209 0 684 211 0 108 chrX 21947916 21948101 -155026039 - MER5B DNA MER1_type -3 175 11 364 216 49 0 chrX 21949947 21950049 -155024091 - L1ME4a LINE L1 0 6121 6015 28 0 0 0 chrX 21952873 21952901 -155021239 + AT_rich Low_complexity Low_complexity 1 28 0 443 301 169 41 chrX 21953221 21953540 -155020600 + L2 LINE L2 2949 3308 -5 926 181 5 11 chrX 21955417 21955605 -155018535 + L1PA16 LINE L1 5978 6164 -2 26 30 0 0 chrX 21955648 21955681 -155018459 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 21955989 21956010 -155018130 + AT_rich Low_complexity Low_complexity 1 21 0 1760 217 20 72 chrX 21956099 21956588 -155017552 + MLT2B1 LTR ERVL 1 464 -56 239 53 0 26 chrX 21956598 21956636 -155017504 + (GA)n Simple_repeat Simple_repeat 1 37 0 229 216 20 0 chrX 21956744 21956795 -155017345 + L1MA6 LINE L1 6025 6076 -224 2457 71 0 7 chrX 21956905 21957215 -155016925 - AluY SINE Alu -3 308 1 3217 117 20 0 chrX 21957336 21957824 -155016316 - L1MA6 LINE L1 -422 5878 5381 1739 202 14 3 chrX 21957821 21958168 -155015972 + L1MA6 LINE L1 5868 6218 -82 * 225 138 75 0 chrX 21958331 21958411 -155015729 + (TAGA)n Simple_repeat Simple_repeat 1 86 0 2361 91 3 0 chrX 21958696 21959004 -155015136 + AluSc SINE Alu 1 309 0 38 68 0 0 chrX 21959101 21959174 -155014966 + AT_rich Low_complexity Low_complexity 1 73 0 294 251 146 5 chrX 21959228 21959332 -155014808 - L1ME1 LINE L1 -351 5770 5656 244 340 94 77 chrX 21959332 21959788 -155014352 + L2 LINE L2 2850 3313 0 29 28 0 0 chrX 21962636 21962672 -155011468 + AT_rich Low_complexity Low_complexity 1 36 0 199 264 108 61 chrX 21962886 21963034 -155011106 - L3b LINE CR1 -147 1436 1282 195 344 8 57 chrX 21964599 21964721 -155009419 - L3 LINE CR1 -759 818 703 3012 193 64 19 chrX 21964816 21965491 -155008649 - L1ME2 LINE L1 -99 6065 5361 1450 213 7 7 chrX 21966048 21966330 -155007810 + AluJo SINE Alu 1 282 -30 385 254 118 0 chrX 21966508 21966618 -155007522 - L2 LINE L2 -1 3271 3149 191 254 91 0 chrX 21968186 21968241 -155005899 - L2 LINE L2 -4 3309 3250 285 301 24 24 chrX 21969055 21969138 -155005002 + L2 LINE L2 2222 2304 -1010 367 330 41 18 chrX 21969138 21969356 -155004784 + L2 LINE L2 2473 2695 -619 203 294 0 0 chrX 21969358 21969409 -155004731 + L2 LINE L2 3249 3299 -14 2589 147 9 13 chrX 21970975 21971423 -155002717 - L1PA16 LINE L1 -11 6155 5710 304 318 0 12 chrX 21973313 21973398 -155000742 - MER5B DNA MER1_type -74 104 21 407 293 159 6 chrX 21974232 21974389 -154999751 + MER5A DNA MER1_type 9 189 0 345 225 0 0 chrX 21975100 21975189 -154998951 + CT-rich Low_complexity Low_complexity 1 89 0 313 346 56 0 chrX 21975212 21975319 -154998821 - L2 LINE L2 0 3272 3160 246 170 0 38 chrX 21975320 21975373 -154998767 + HSMAR1 DNA Mariner 1237 1287 0 647 334 93 30 chrX 21978484 21978720 -154995420 + L2 LINE L2 2356 2576 -696 4097 141 35 3 chrX 21978720 21979396 -154994744 - L1PA16 LINE L1 -9 6157 5460 647 334 93 30 chrX 21979396 21979821 -154994319 + L2 LINE L2 2576 3055 -217 540 309 39 17 chrX 21980622 21980803 -154993337 - MIR SINE MIR -8 254 70 1097 162 158 0 chrX 21980917 21981145 -154992995 + MER21A LTR ERV1 1 264 -667 3016 141 34 54 chrX 21981150 21981477 -154992663 + MER21A LTR ERV1 376 689 -242 285 98 0 0 chrX 21981477 21981518 -154992622 + (TG)n Simple_repeat Simple_repeat 1 41 0 3016 141 34 54 chrX 21981518 21981750 -154992390 + MER21A LTR ERV1 689 924 -7 479 203 16 55 chrX 21982017 21982145 -154991995 + MER94 DNA DNA 1 123 -11 256 276 0 0 chrX 21982372 21982430 -154991710 + L2 LINE L2 3254 3311 -2 2263 113 0 0 chrX 21982576 21982877 -154991263 - AluSc SINE Alu -8 301 1 2350 101 0 0 chrX 21984571 21984878 -154989262 + AluSx SINE Alu 1 307 -5 23 0 0 0 chrX 21984884 21984907 -154989233 + AT_rich Low_complexity Low_complexity 1 23 0 2286 101 0 3 chrX 21985376 21985684 -154988456 + AluSg SINE Alu 1 307 -3 522 0 0 0 chrX 21987093 21987151 -154986989 + (CA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 21987529 21987552 -154986588 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chrX 21988152 21988187 -154985953 + AT_rich Low_complexity Low_complexity 1 35 0 1075 235 72 7 chrX 21988813 21989090 -154985050 + Charlie4a DNA MER1_type 6 300 -208 330 156 62 0 chrX 21989097 21989161 -154984979 + Charlie4a DNA MER1_type 426 493 -15 845 251 89 124 chrX 21989646 21989821 -154984319 - L1MC4 LINE L1 -6 8036 7856 279 0 0 0 chrX 21989821 21989852 -154984288 + (CA)n Simple_repeat Simple_repeat 1 31 0 845 251 89 124 chrX 21989852 21990885 -154983255 - L1MC4 LINE L1 -186 7856 6766 505 236 105 74 chrX 21991676 21991905 -154982235 + Charlie8 DNA MER1_type 1 236 -2181 344 145 246 56 chrX 21991908 21992060 -154982080 + MER5A DNA MER1_type 4 189 0 757 271 65 5 chrX 21992215 21992429 -154981711 - MIR SINE MIR -21 241 15 258 125 0 0 chrX 21992660 21992708 -154981432 + (A)n Simple_repeat Simple_repeat 1 48 0 314 378 18 74 chrX 21992708 21993047 -154981093 + L2 LINE L2 2945 3264 -8 263 363 60 44 chrX 21993832 21994014 -154980126 - L2 LINE L2 -209 3063 2879 1906 115 59 7 chrX 21994390 21994678 -154979462 + AluSx SINE Alu 1 303 -9 306 329 25 86 chrX 21995346 21995705 -154978435 - L2 LINE L2 -766 2548 2212 320 331 25 32 chrX 21996337 21996494 -154977646 + L2 LINE L2 2854 3009 -304 836 275 73 68 chrX 21996520 21996946 -154977194 - MLT1J2 LTR MaLR -21 429 2 600 229 92 82 chrX 21996947 21997239 -154976901 + L2 LINE L2 3011 3305 -8 477 246 75 30 chrX 21997609 21997743 -154976397 - MIR SINE MIR -74 188 49 201 39 0 0 chrX 21998272 21998298 -154975842 + (CA)n Simple_repeat Simple_repeat 2 27 0 315 325 113 29 chrX 22000825 22001206 -154972934 + L1ME4a LINE L1 5483 5895 -226 598 121 0 0 chrX 22002659 22002750 -154971390 + L1MA1 LINE L1 6212 6302 0 191 430 63 6 chrX 22003084 22003242 -154970898 + L2 LINE L2 3096 3262 -10 1049 262 91 3 chrX 22003277 22003667 -154970473 + L1ME3A LINE L1 5725 6165 -5 304 251 81 11 chrX 22003946 22004040 -154970100 + MLT1H1 LTR MaLR 414 502 -53 1036 177 9 78 chrX 22004147 22004379 -154969761 + MER20 DNA MER1_type 4 219 0 1978 134 0 10 chrX 22004409 22004429 -154969711 - AluSx SINE Alu -9 303 284 372 43 0 0 chrX 22004429 22004475 -154969665 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1978 134 0 10 chrX 22004475 22004760 -154969380 - AluSx SINE Alu -28 284 1 341 280 19 0 chrX 22005322 22005429 -154968711 + (TA)n Simple_repeat Simple_repeat 2 110 0 220 336 69 9 chrX 22005968 22006084 -154968056 - MIR SINE MIR -6 256 134 187 416 0 0 chrX 22006240 22006317 -154967823 - L2 LINE L2 -8 3264 3188 619 255 46 10 chrX 22006506 22006702 -154967438 + MER3 DNA MER1_type 1 203 -6 694 280 24 60 chrX 22006816 22007066 -154967074 + MIR SINE MIR 17 257 -5 29 28 0 0 chrX 22008147 22008183 -154965957 + AT_rich Low_complexity Low_complexity 1 36 0 542 250 23 17 chrX 22008221 22008393 -154965747 - L1M4 LINE L1 -1218 4928 4756 282 173 93 0 chrX 22008400 22008475 -154965665 - L1MB7 LINE L1 0 6184 6103 378 249 79 68 chrX 22008484 22008599 -154965541 - L1MB3 LINE L1 -1 6182 6070 2303 83 3 3 chrX 22008599 22008900 -154965240 - AluSx SINE Alu -11 301 1 378 249 79 68 chrX 22008900 22009049 -154965091 - L1MB3 LINE L1 -113 6070 5915 2175 115 3 6 chrX 22011077 22011390 -154962750 + AluSx SINE Alu 1 312 0 248 326 18 13 chrX 22011616 22011743 -154962397 + MIR SINE MIR 20 147 -71 322 237 200 30 chrX 22011924 22011942 -154962198 - MER5A DNA MER1_type -6 183 169 4236 193 24 3 chrX 22011942 22012790 -154961350 + MER6 DNA MER2_type 1 865 0 322 237 200 30 chrX 22012790 22012906 -154961234 - MER5A DNA MER1_type -20 169 26 611 260 25 5 chrX 22013236 22013390 -154960750 + LTR33A LTR ERVL 65 221 -300 1589 244 133 11 chrX 22013691 22014133 -154960007 - MLT1H LTR MaLR -13 536 41 308 293 171 0 chrX 22014369 22014509 -154959631 - L2 LINE L2 0 3313 3150 5449 97 11 5 chrX 22014975 22015777 -154958363 - L1MA2 LINE L1 0 6304 5498 369 16 0 49 chrX 22016234 22016295 -154957845 + (TTTTG)n Simple_repeat Simple_repeat 3 60 0 344 253 22 0 chrX 22016753 22016844 -154957296 - MLT1G1 LTR MaLR 0 555 463 815 225 61 80 chrX 22016886 22017253 -154956887 - MLT1G1 LTR MaLR -178 417 1 307 287 126 42 chrX 22017273 22017347 -154956793 + MIR SINE MIR 107 173 -89 9420 100 4 2 chrX 22017347 22018631 -154955509 - HSMAR1 DNA Mariner 0 1287 1 307 287 126 42 chrX 22018631 22018699 -154955441 + MIR SINE MIR 173 261 -1 226 295 16 0 chrX 22019581 22019642 -154954498 - MIR SINE MIR 0 262 201 201 94 0 0 chrX 22020463 22020495 -154953645 + (T)n Simple_repeat Simple_repeat 1 32 0 268 269 68 78 chrX 22020501 22020720 -154953420 - MLT1K LTR MaLR -172 416 200 382 287 35 0 chrX 22021031 22021146 -154952994 + LTR16C LTR ERVL 1 119 -372 3331 66 2 7 chrX 22021299 22021740 -154952400 - L1PA6 LINE L1 -15 6139 5701 1966 157 7 3 chrX 22022208 22022513 -154951627 - AluSx SINE Alu -6 306 1 269 329 12 0 chrX 22022670 22022773 -154951367 - MIR SINE MIR -67 141 37 24 0 0 0 chrX 22023173 22023197 -154950943 + AT_rich Low_complexity Low_complexity 1 24 0 351 226 129 0 chrX 22023331 22023424 -154950716 + MER67D-int LTR ERV1 63 167 -4769 2633 219 23 31 chrX 22023681 22024284 -154949856 + MER67D-int LTR ERV1 369 966 -3970 781 198 78 12 chrX 22024283 22024619 -154949521 + MER67D-int LTR ERV1 1968 2357 -2579 * 4827 223 51 68 chrX 22024932 22026568 -154947572 + MER67D-int LTR ERV1 2480 4088 -848 1170 165 36 94 chrX 22026571 22026880 -154947260 - L1MA10 LINE L1 -1 6333 6043 516 212 176 6 chrX 22026881 22027051 -154947089 + MER67D-int LTR ERV1 4083 4281 -655 289 147 80 27 chrX 22027052 22027127 -154947013 + LTR37A LTR ERV1 51 129 -297 424 225 0 0 chrX 22027215 22027304 -154946836 + MER67D-int LTR ERV1 4381 4469 -467 458 214 6 54 chrX 22027385 22027570 -154946570 + MER67D-int LTR ERV1 4482 5943 -371 * 633 216 140 59 chrX 22027539 22027775 -154946365 + MER67D-int LTR ERV1 4582 4836 -100 1882 196 80 54 chrX 22027857 22028358 -154945782 + MER67D LTR ERV1 1 514 0 21 0 0 0 chrX 22032317 22032338 -154941802 + AT_rich Low_complexity Low_complexity 1 21 0 2468 123 76 28 chrX 22032361 22032824 -154941316 + MER31A LTR ERV1 1 485 0 326 336 0 8 chrX 22033830 22033952 -154940188 - MIR SINE MIR -14 248 128 552 321 86 21 chrX 22033995 22034238 -154939902 + MIR SINE MIR 2 260 -2 854 123 0 8 chrX 22034288 22034410 -154939730 + FLAM_C SINE Alu 1 121 -22 218 0 94 0 chrX 22034422 22034454 -154939686 + A-rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chrX 22034867 22034890 -154939250 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chrX 22035307 22035336 -154938804 + AT_rich Low_complexity Low_complexity 1 29 0 526 189 0 11 chrX 22035845 22035940 -154938200 - AluJ/FLAM SINE Alu -218 94 1 324 320 95 40 chrX 22036281 22036606 -154937534 + L2 LINE L2 1852 2194 -1120 1024 302 40 22 chrX 22036628 22037029 -154937111 - MLT1J LTR MaLR 0 511 104 258 304 9 27 chrX 22037131 22037243 -154936897 + L2 LINE L2 2275 2384 -930 205 353 59 29 chrX 22037460 22037596 -154936544 - MIR SINE MIR -103 159 20 1700 166 3 36 chrX 22037802 22038104 -154936036 - AluJb SINE Alu -20 292 1 1461 174 17 34 chrX 22038122 22038491 -154935649 - L1MA4 LINE L1 -4 6167 5757 22 70 0 0 chrX 22038741 22038784 -154935356 + AT_rich Low_complexity Low_complexity 1 43 0 391 289 70 6 chrX 22039174 22039330 -154934810 + MIR SINE MIR 90 255 -7 291 333 89 13 chrX 22039427 22039728 -154934412 + L1M4 LINE L1 104 534 -6012 3790 259 85 43 chrX 22039872 22041585 -154932555 + L1M4 LINE L1 745 2384 -4260 1825 171 44 0 chrX 22041585 22041800 -154932340 + MER46B DNA MER2_type 2 114 -2617 588 65 0 0 chrX 22041800 22041877 -154932263 + (TA)n Simple_repeat Simple_repeat 2 78 0 1825 171 44 0 chrX 22041877 22042005 -154932135 + MER46B DNA MER2_type 114 235 -1 3790 259 85 43 chrX 22042005 22043349 -154930791 + L1M4 LINE L1 2384 4027 -2617 2059 210 33 65 chrX 22043346 22044021 -154930119 + L1M4 LINE L1 4648 5300 -1344 * 355 242 0 21 chrX 22044091 22044186 -154929954 + L1M4 LINE L1 5299 5391 -1253 4749 163 31 62 chrX 22044238 22045262 -154928878 + L1MA10 LINE L1 5282 6274 -60 503 195 0 0 chrX 22045262 22045344 -154928796 - Tigger5 DNA MER2_type 0 2323 2242 368 227 0 0 chrX 22045334 22045409 -154928731 + Tigger5 DNA MER2_type 2242 2316 -7 * 425 172 11 35 chrX 22045406 22045493 -154928647 - Tigger5 DNA MER2_type -2238 85 1 1338 196 65 4 chrX 22045565 22045840 -154928300 + AluJo SINE Alu 3 294 -18 348 319 105 57 chrX 22046589 22046818 -154927322 + L2 LINE L2 2820 3059 -254 413 316 30 15 chrX 22047351 22047484 -154926656 + L2 LINE L2 3134 3268 -4 1109 76 7 0 chrX 22047511 22047656 -154926484 + AluSg/x SINE Alu 161 306 -6 244 286 71 0 chrX 22047700 22047770 -154926370 + L2 LINE L2 3229 3303 -10 1964 73 9 98 chrX 22048179 22048506 -154925634 + AluSx SINE Alu 1 298 -14 1614 169 86 30 chrX 22048511 22048884 -154925256 - Charlie1b DNA MER1_type -129 394 1 480 18 0 0 chrX 22049058 22049115 -154925025 + (TC)n Simple_repeat Simple_repeat 2 58 0 902 212 18 0 chrX 22049768 22049938 -154924202 - MER58B DNA MER1_type 0 341 169 4649 61 22 3 chrX 22050060 22050686 -154923454 + L1PA7 LINE L1 5513 6150 -4 2354 182 18 16 chrX 22050700 22051210 -154922930 - L1MB2 LINE L1 -16 6155 5645 1905 193 58 10 chrX 22051210 22051603 -154922537 - MER47B DNA MER2_type 0 418 7 402 86 17 0 chrX 22051609 22051667 -154922473 - L1M3 LINE L1 -525 5646 5588 1803 148 12 21 chrX 22051667 22051998 -154922142 - L1MB2 LINE L1 -545 5626 5299 191 122 0 24 chrX 22052436 22052477 -154921663 + (TA)n Simple_repeat Simple_repeat 2 41 0 2263 67 7 3 chrX 22053498 22053798 -154920342 - AluY SINE Alu -10 301 1 2267 130 0 0 chrX 22053798 22054120 -154920020 - MER48 LTR ERV1 -65 322 1 272 242 76 102 chrX 22054120 22054272 -154919868 - MER112 DNA MER1_type -32 228 81 29 21 0 21 chrX 22054417 22054429 -154919711 + AT_rich Low_complexity Low_complexity 1 12 -34 2129 97 4 0 chrX 22054429 22054707 -154919433 + AluSg SINE Alu 1 279 -31 29 21 0 21 chrX 22054707 22054741 -154919399 + AT_rich Low_complexity Low_complexity 12 46 0 270 0 0 0 chrX 22054883 22054913 -154919227 + (TG)n Simple_repeat Simple_repeat 2 31 0 315 0 0 0 chrX 22055089 22055124 -154919016 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chrX 22055193 22055222 -154918918 + (CA)n Simple_repeat Simple_repeat 2 30 0 1085 259 88 37 chrX 22055233 22055769 -154918371 - L1MC4a LINE L1 -1959 5849 5287 213 229 0 21 chrX 22057311 22057359 -154916781 - MER5A DNA MER1_type -142 47 1 21 0 0 0 chrX 22058254 22058275 -154915865 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chrX 22058405 22058437 -154915703 + AT_rich Low_complexity Low_complexity 1 32 0 2312 112 0 0 chrX 22059452 22059764 -154914376 - AluSx SINE Alu 0 312 1 280 274 134 18 chrX 22060448 22060612 -154913528 - L1ME LINE L1 -411 5751 5569 359 262 113 1 chrX 22060613 22060801 -154913339 - L1P5 LINE L1 -693 5458 5254 992 198 38 9 chrX 22061868 22062080 -154912060 + MER20 DNA MER1_type 2 219 0 470 287 59 51 chrX 22062191 22062445 -154911695 + MIR SINE MIR 5 260 -2 576 250 17 23 chrX 22062502 22062674 -154911466 - MER104 DNA Tc2 0 180 10 265 291 107 15 chrX 22063270 22063416 -154910724 - MIR SINE MIR -66 196 29 860 256 82 0 chrX 22063448 22063655 -154910485 + MER58A DNA MER1_type 1 224 0 2060 116 7 0 chrX 22063677 22063961 -154910179 + AluSx SINE Alu 1 286 -26 21 57 0 0 chrX 22063964 22063999 -154910141 + AT_rich Low_complexity Low_complexity 1 35 0 525 81 11 0 chrX 22064090 22064177 -154909963 - L1MA7 LINE L1 0 6291 6204 322 184 0 122 chrX 22064237 22064335 -154909805 - MER58B DNA MER1_type -5 336 251 1299 255 50 35 chrX 22064596 22065272 -154908868 + L2 LINE L2 2626 3307 -6 411 207 20 44 chrX 22066037 22066151 -154907989 - MLT1I LTR MaLR 0 567 278 309 225 45 54 chrX 22066308 22066419 -154907721 - MLT1I LTR MaLR -341 208 99 355 263 44 31 chrX 22066500 22066660 -154907480 + MER104 DNA Tc2 5 166 -14 1636 86 35 0 chrX 22066730 22066962 -154907178 + L1PA13 LINE L1 5921 6160 -3 22 35 0 0 chrX 22067128 22067157 -154906983 + AT_rich Low_complexity Low_complexity 1 29 0 245 270 63 0 chrX 22067552 22067615 -154906525 + L2 LINE L2 3200 3266 -6 189 0 0 0 chrX 22067617 22067638 -154906502 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 395 308 205 11 chrX 22068864 22069049 -154905091 + MIR SINE MIR 40 260 -2 333 0 0 0 chrX 22070387 22070424 -154903716 + (TG)n Simple_repeat Simple_repeat 2 38 0 529 51 13 13 chrX 22071405 22071483 -154902657 + (GA)n Simple_repeat Simple_repeat 1 78 0 349 290 164 39 chrX 22071692 22071899 -154902241 + L2 LINE L2 2899 3131 -182 429 167 0 0 chrX 22071899 22071977 -154902163 + (TA)n Simple_repeat Simple_repeat 1 78 0 1019 168 97 0 chrX 22071977 22072162 -154901978 - Tigger1 DNA MER2_type 0 2418 2216 5444 168 24 23 chrX 22072168 22072835 -154901305 + L1PA16 LINE L1 4351 5016 -1150 2093 99 0 24 chrX 22072835 22073129 -154901011 + AluSc SINE Alu 1 287 -22 5444 168 24 23 chrX 22073129 22074274 -154899866 + L1PA16 LINE L1 5016 6157 -9 13883 133 19 10 chrX 22074282 22076495 -154897645 - Tigger1 DNA MER2_type -187 2231 1 238 250 21 14 chrX 22076495 22076639 -154897501 + (TA)n Simple_repeat Simple_repeat 2 146 0 300 324 121 11 chrX 22077616 22077798 -154896342 - L2 LINE L2 0 3313 3112 214 344 54 11 chrX 22078107 22078200 -154895940 + MIR SINE MIR 20 116 -146 378 340 73 5 chrX 22079394 22079600 -154894540 - L3b LINE CR1 -161 1422 1203 2264 91 0 0 chrX 22082252 22082539 -154891601 + AluSq SINE Alu 1 287 -26 824 123 0 7 chrX 22083598 22083736 -154890404 + (TC)n Simple_repeat Simple_repeat 1 137 0 2239 87 7 13 chrX 22085145 22085443 -154888697 + AluY SINE Alu 3 298 -13 854 289 60 16 chrX 22085846 22086164 -154887976 - MER90 LTR ERV1 -7 607 276 332 220 77 71 chrX 22086170 22086338 -154887802 - MER90 LTR ERV1 -406 169 1 2327 78 3 0 chrX 22086435 22086730 -154887410 - AluSp SINE Alu -17 296 1 22 35 0 0 chrX 22087487 22087516 -154886624 + AT_rich Low_complexity Low_complexity 1 29 0 37 0 0 0 chrX 22087568 22087605 -154886535 + AT_rich Low_complexity Low_complexity 1 37 0 2722 125 22 16 chrX 22087655 22088102 -154886038 - L1PB2 LINE L1 -1 6150 5701 5084 195 21 89 chrX 22088109 22088353 -154885787 - L1 LINE L1 -2445 3701 3442 2159 134 0 0 chrX 22088353 22088659 -154885481 - AluSg SINE Alu -4 306 1 5084 195 21 89 chrX 22088659 22089946 -154884194 - L1 LINE L1 -2704 3442 2275 496 162 0 12 chrX 22089947 22090046 -154884094 - L1MA4 LINE L1 -45 6255 6161 353 305 114 38 chrX 22091175 22091385 -154882755 - MIR SINE MIR -5 257 32 630 182 131 6 chrX 22092278 22092454 -154881686 + MER63 DNA MER1_type 821 1018 -43 36 23 0 0 chrX 22092489 22092532 -154881608 + AT_rich Low_complexity Low_complexity 1 43 0 1974 104 45 0 chrX 22092604 22092893 -154881247 + AluSq SINE Alu 1 302 -11 1480 178 42 18 chrX 22093282 22093568 -154880572 + AluJb SINE Alu 1 293 -19 313 297 55 48 chrX 22093740 22093885 -154880255 - L2 LINE L2 -1 3271 3126 3432 54 75 6 chrX 22093894 22094374 -154879766 - LTR10D LTR ERV1 0 513 1 432 0 0 0 chrX 22094454 22094502 -154879638 + (CA)n Simple_repeat Simple_repeat 2 49 0 419 320 101 71 chrX 22094814 22095151 -154878989 + L2 LINE L2 2925 3271 -1 381 216 103 27 chrX 22095470 22095633 -154878507 - MLT1J2 LTR MaLR -9 437 269 295 308 105 0 chrX 22095646 22095789 -154878351 - MER105 DNA DNA 0 204 47 668 240 58 0 chrX 22095799 22095953 -154878187 + MER5A DNA MER1_type 26 188 -1 267 297 47 18 chrX 22096020 22096149 -154877991 - MLT1I LTR MaLR -203 206 99 573 194 8 47 chrX 22096231 22096360 -154877780 - MER63 DNA MER1_type -86 750 1 1120 250 39 0 chrX 22096383 22096643 -154877497 - LTR16A LTR ERVL -174 276 7 329 299 10 31 chrX 22096649 22096746 -154877394 - MER5B DNA MER1_type -67 111 17 372 290 100 56 chrX 22097383 22097724 -154876416 - LTR16A LTR ERVL -64 386 31 183 42 0 0 chrX 22098098 22098122 -154876018 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 416 312 116 6 chrX 22098806 22098979 -154875161 - L2 LINE L2 0 3313 3122 417 239 197 8 chrX 22099002 22099119 -154875021 + MER5A DNA MER1_type 49 187 -2 480 286 143 15 chrX 22099122 22099381 -154874759 - L2 LINE L2 -185 3128 2837 322 280 42 25 chrX 22100044 22100162 -154873978 - MIR SINE MIR -122 140 21 2135 130 10 0 chrX 22100303 22100332 -154873808 - AluSx SINE Alu -1 311 284 252 0 0 0 chrX 22100332 22100360 -154873780 + (TG)n Simple_repeat Simple_repeat 1 28 0 2135 130 10 0 chrX 22100360 22100638 -154873502 - AluSx SINE Alu -28 284 1 269 344 0 21 chrX 22100696 22100792 -154873348 - MIR3 SINE MIR -3 205 112 1165 274 48 46 chrX 22100971 22101474 -154872666 - MLT1H LTR MaLR -2 547 44 631 233 63 85 chrX 22101571 22101695 -154872445 - MER5A DNA MER1_type -3 186 66 2335 86 0 0 chrX 22101695 22101986 -154872154 - AluSx SINE Alu -21 291 1 631 233 63 85 chrX 22101986 22102050 -154872090 - MER5A DNA MER1_type -123 66 2 2388 31 0 10 chrX 22103132 22103424 -154870716 - AluY SINE Alu -22 289 1 292 229 16 0 chrX 22103575 22103636 -154870504 - MER58A DNA MER1_type -1 223 162 523 203 24 41 chrX 22103641 22103764 -154870376 - MER58A DNA MER1_type 0 140 20 835 273 85 28 chrX 22103773 22103955 -154870185 + LTR16C LTR ERVL 35 244 -247 2580 100 3 19 chrX 22103955 22104324 -154869816 - THE1B LTR MaLR -1 363 1 835 273 85 28 chrX 22104324 22104460 -154869680 + LTR16C LTR ERVL 244 371 -120 538 222 0 0 chrX 22104623 22104722 -154869418 + LTR16C LTR ERVL 393 491 0 640 293 6 6 chrX 22104748 22104915 -154869225 - MIR SINE MIR -90 172 6 182 36 0 36 chrX 22105011 22105039 -154869101 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3050 33 0 0 chrX 22105048 22105409 -154868731 - L1PA4 LINE L1 -5 6150 5790 23 0 0 0 chrX 22106111 22106134 -154868006 + AT_rich Low_complexity Low_complexity 1 23 0 193 350 38 19 chrX 22107228 22107388 -154866752 - L3b LINE CR1 -319 1264 1102 222 308 105 30 chrX 22107588 22107721 -154866419 - MIR3 SINE MIR -43 165 23 376 225 8 16 chrX 22108286 22108415 -154865725 + (TA)n Simple_repeat Simple_repeat 1 128 0 351 287 0 10 chrX 22108420 22108521 -154865619 - L1MC4 LINE L1 -1339 6703 6604 561 296 57 40 chrX 22109533 22109780 -154864360 - MIR SINE MIR -8 254 4 249 33 0 0 chrX 22110050 22110080 -154864060 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 1165 224 5 0 chrX 22111509 22111723 -154862417 - MER58A DNA MER1_type -9 215 1 848 330 108 60 chrX 22112540 22113539 -154860601 - L2 LINE L2 -8 3264 2221 2239 77 14 7 chrX 22113625 22113922 -154860218 + AluSp SINE Alu 1 299 -14 231 161 0 0 chrX 22113985 22114041 -154860099 + C-rich Low_complexity Low_complexity 1 56 0 208 198 0 60 chrX 22114133 22114249 -154859891 + C-rich Low_complexity Low_complexity 3 111 0 246 262 60 12 chrX 22114645 22114729 -154859411 - LTR65 LTR ERV1 -274 395 308 252 0 0 0 chrX 22115017 22115045 -154859095 + (TG)n Simple_repeat Simple_repeat 1 28 0 1065 280 77 17 chrX 22115847 22116355 -154857785 + L1MC/D LINE L1 5118 5655 -747 2163 154 25 3 chrX 22116463 22116819 -154857321 - THE1B LTR MaLR 0 364 1 423 249 134 17 chrX 22117660 22117926 -154856214 + L1ME LINE L1 5176 5469 -693 2723 199 96 92 chrX 22117996 22119221 -154854919 + Tigger3b DNA MER2_type 1 1230 -1 871 268 63 13 chrX 22119265 22119582 -154854558 + L1ME3A LINE L1 4446 4778 -1368 2200 264 65 24 chrX 22119923 22120830 -154853310 + L1ME3A LINE L1 5189 6155 -15 380 285 23 8 chrX 22120834 22120964 -154853176 + L1ME LINE L1 5570 5701 -420 5406 147 12 21 chrX 22121177 22122141 -154851999 + L1MA8 LINE L1 5326 6281 -10 284 341 66 28 chrX 22122408 22122619 -154851521 - MIR SINE MIR -24 238 20 2651 45 0 3 chrX 22122679 22122989 -154851151 + AluY SINE Alu 1 309 -2 475 276 178 20 chrX 22124320 22124472 -154849668 - MIR SINE MIR -81 181 6 327 25 0 0 chrX 22126958 22126998 -154847142 + (TC)n Simple_repeat Simple_repeat 1 40 0 * 348 24 0 0 chrX 22126997 22127038 -154847102 + (CA)n Simple_repeat Simple_repeat 1 41 0 684 184 0 29 chrX 22127577 22127756 -154846384 + FLAM_C SINE Alu 2 176 0 421 175 135 0 chrX 22127769 22127882 -154846258 - MER3 DNA MER1_type -79 130 48 216 0 0 0 chrX 22128135 22128159 -154845981 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chrX 22128239 22128261 -154845879 + AT_rich Low_complexity Low_complexity 1 22 0 1177 216 64 24 chrX 22128798 22129126 -154845014 + MER58B DNA MER1_type 1 341 0 23 33 0 0 chrX 22129629 22129659 -154844481 + AT_rich Low_complexity Low_complexity 1 30 0 1173 189 33 46 chrX 22129695 22129853 -154844287 + MER33 DNA MER1_type 1 155 -2430 1878 195 0 14 chrX 22129853 22130202 -154843938 - MER7A DNA MER2_type -4 342 1 1173 189 33 46 chrX 22130202 22130350 -154843790 + MER33 DNA MER1_type 155 303 -21 333 257 157 21 chrX 22131126 22131266 -154842874 + MIR3 SINE MIR 30 188 -20 193 242 0 0 chrX 22131330 22131363 -154842777 + L2 LINE L2 3158 3190 -82 22 0 0 0 chrX 22132257 22132279 -154841861 + AT_rich Low_complexity Low_complexity 1 22 0 200 211 0 0 chrX 22132340 22132378 -154841762 - L2 LINE L2 -21 3251 3214 278 235 133 0 chrX 22132708 22132806 -154841334 - MER53 DNA DNA 0 189 79 1619 204 83 47 chrX 22133461 22133994 -154840146 + MER69 DNA AcHobo 1975 2526 0 7763 20 0 0 chrX 22134271 22135375 -154838765 - L1PA3 LINE L1 0 6155 5052 5536 30 0 1 chrX 22135376 22136043 -154838097 + L1PA3 LINE L1 4399 5064 -1082 25 0 0 0 chrX 22136416 22136441 -154837699 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 22136970 22136996 -154837144 + AT_rich Low_complexity Low_complexity 1 26 0 2129 127 48 22 chrX 22137591 22137946 -154836194 + THE1B LTR MaLR 1 364 0 1039 69 21 0 chrX 22137946 22138091 -154836049 + THE1B-int LTR MaLR 1 148 -1432 1196 118 20 0 chrX 22139163 22139367 -154834773 - L1MA8 LINE L1 0 6291 6084 260 344 110 13 chrX 22139694 22139848 -154834292 + MIR SINE MIR 66 234 -28 1294 167 75 3 chrX 22140398 22140691 -154833449 - MER33 DNA MER1_type -8 316 3 1488 270 66 40 chrX 22141679 22142256 -154831884 + MLT1E LTR MaLR 2 593 0 2526 105 16 5 chrX 22143325 22143696 -154830444 + THE1C LTR MaLR 1 375 0 763 273 53 5 chrX 22144459 22144668 -154829472 - LTR16C LTR ERVL 0 491 273 4892 49 10 5 chrX 22144669 22145405 -154828735 + L1P2 LINE L1 4747 5482 -672 1040 150 44 49 chrX 22145407 22145633 -154828507 - L1MA9 LINE L1 -75 6237 6013 2168 113 50 19 chrX 22145633 22145997 -154828143 + THE1C LTR MaLR 1 375 0 8774 114 69 8 chrX 22145997 22147493 -154826647 + THE1C-int LTR MaLR 1 1580 0 2257 104 50 19 chrX 22147493 22147857 -154826283 + THE1C LTR MaLR 1 375 0 376 313 99 21 chrX 22148245 22148478 -154825662 + L2 LINE L2 3057 3307 -6 240 163 0 0 chrX 22149943 22149986 -154824154 - L1MB2 LINE L1 -2 6169 6127 2418 154 19 12 chrX 22149986 22150415 -154823725 - MSTB1 LTR MaLR 0 432 1 521 386 84 30 chrX 22150497 22151186 -154822954 + L2 LINE L2 2243 2968 -346 408 252 69 31 chrX 22151406 22151642 -154822498 - MLT1L LTR MaLR -5 609 335 975 166 6 0 chrX 22153292 22153455 -154820685 + MER47A DNA MER2_type 13 176 -190 839 185 14 59 chrX 22153865 22154087 -154820053 + L1MA9 LINE L1 6096 6307 -5 390 333 40 94 chrX 22154106 22154601 -154819539 - L2 LINE L2 -98 3174 2699 285 299 55 16 chrX 22154658 22154785 -154819355 + MER94 DNA DNA 3 134 0 387 299 114 32 chrX 22154786 22155127 -154819013 - L2 LINE L2 -684 2630 2262 378 295 90 62 chrX 22155185 22155473 -154818667 - LTR16C LTR ERVL -8 483 188 977 83 7 7 chrX 22155880 22156024 -154818116 + MER47A DNA MER2_type 188 331 -35 416 188 0 0 chrX 22156025 22156094 -154818046 + MER47A DNA MER2_type 298 366 0 1469 209 144 75 chrX 22156126 22156898 -154817242 + LTR1B LTR ERV1 1 825 -1 22 0 0 0 chrX 22157635 22157657 -154816483 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 22158194 22158223 -154815917 + AT_rich Low_complexity Low_complexity 1 29 0 297 309 91 55 chrX 22158716 22158881 -154815259 + MIR3 SINE MIR 21 191 -17 2699 226 25 22 chrX 22160089 22161060 -154813080 + L1M4c LINE L1 2042 3025 -3357 1943 148 7 0 chrX 22162107 22162405 -154811735 - AluSx SINE Alu -12 300 1 723 333 44 0 chrX 22162508 22162760 -154811380 - LTR16A LTR ERVL 0 450 188 390 236 21 21 chrX 22163170 22163314 -154810826 + L1P LINE L1 5279 5422 -732 239 232 0 37 chrX 22213588 22213670 -154760470 + (TATAA)n Simple_repeat Simple_repeat 1 79 0 337 262 170 12 chrX 22213800 22214081 -154760059 - LTR33 LTR ERVL -150 371 3 21 0 0 0 chrX 22214085 22214106 -154760034 + AT_rich Low_complexity Low_complexity 1 21 0 4403 89 0 13 chrX 22214655 22215272 -154758868 + L1MA2 LINE L1 5354 5962 -342 640 211 124 55 chrX 22216614 22216832 -154757308 + MIR SINE MIR 30 262 0 385 324 14 22 chrX 22217069 22217208 -154756932 - MIR SINE MIR -98 164 27 506 322 50 6 chrX 22217426 22217606 -154756534 + MIR SINE MIR 75 262 0 284 298 73 116 chrX 22218247 22218576 -154755564 - L2 LINE L2 -1 3271 2957 414 0 0 0 chrX 22218645 22218691 -154755449 + (TG)n Simple_repeat Simple_repeat 2 47 0 2101 109 3 7 chrX 22219259 22219552 -154754588 - AluSx SINE Alu -20 292 1 755 179 30 36 chrX 22219728 22219896 -154754244 - Looper DNA T2_type 0 1558 1392 2222 85 3 7 chrX 22219896 22220178 -154753962 + AluSq SINE Alu 1 281 -32 211 28 56 0 chrX 22220179 22220215 -154753925 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 1292 191 28 3 chrX 22220217 22220499 -154753641 - Looper DNA T2_type -588 970 682 290 296 28 0 chrX 22220607 22220678 -154753462 - MIR SINE MIR -184 78 6 210 356 152 8 chrX 22220768 22220900 -154753240 + L2 LINE L2 3118 3268 -4 795 243 6 23 chrX 22221391 22221568 -154752572 - MER45A DNA AcHobo -4 174 1 965 287 60 29 chrX 22222078 22222527 -154751613 - LTR16B LTR ERVL 0 464 2 300 372 32 26 chrX 22222685 22222841 -154751299 + L2 LINE L2 3097 3253 -19 1658 209 25 93 chrX 22222847 22223415 -154750725 + L1MC4 LINE L1 7513 8041 -1 180 347 19 42 chrX 22224656 22224872 -154749268 - L2 LINE L2 -2358 956 746 257 233 164 14 chrX 22225803 22225876 -154748264 + L2 LINE L2 3230 3313 0 30 59 0 0 chrX 22226941 22226992 -154747148 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chrX 22228908 22228930 -154745210 + AT_rich Low_complexity Low_complexity 1 22 0 180 182 0 0 chrX 22229006 22229050 -154745090 + (TG)n Simple_repeat Simple_repeat 2 45 0 291 311 104 18 chrX 22229054 22229134 -154745006 - MIR SINE MIR -77 185 113 2463 14 0 11 chrX 22229134 22229416 -154744724 + AluY SINE Alu 1 279 -32 291 311 104 18 chrX 22229416 22229499 -154744641 - MIR SINE MIR -149 113 8 862 273 171 11 chrX 22229717 22230091 -154744049 - MLT1J1 LTR MaLR 0 446 13 1371 208 42 21 chrX 22232618 22232907 -154741233 + AluJo SINE Alu 3 297 -15 24 32 0 0 chrX 22232907 22232938 -154741202 + AT_rich Low_complexity Low_complexity 1 31 0 2292 100 0 3 chrX 22233194 22233504 -154740636 - AluSg SINE Alu -1 309 1 294 315 59 85 chrX 22233997 22234192 -154739948 - MLT1J LTR MaLR -4 507 418 2321 86 13 0 chrX 22234192 22234496 -154739644 - AluSc SINE Alu 0 309 2 294 315 59 85 chrX 22234496 22234716 -154739424 - MLT1J LTR MaLR -93 418 194 243 311 27 0 chrX 22234823 22234897 -154739243 - MLT1L LTR MaLR -537 78 3 1556 55 0 0 chrX 22235601 22235783 -154738357 + AluY SINE Alu 1 182 -129 452 33 0 0 chrX 22235783 22235843 -154738297 + AluY SINE Alu 242 301 -10 832 215 35 63 chrX 22235853 22236076 -154738064 + L1MA10 LINE L1 6031 6246 -88 1917 135 19 61 chrX 22236076 22236439 -154737701 - MER7A DNA MER2_type 0 346 1 832 215 35 63 chrX 22236439 22236499 -154737641 + L1MA10 LINE L1 6246 6306 -28 266 289 99 0 chrX 22236649 22236791 -154737349 - MER103 DNA DNA -8 158 3 22 56 0 0 chrX 22237108 22237144 -154736996 + AT_rich Low_complexity Low_complexity 1 36 0 1445 271 70 22 chrX 22238676 22238991 -154735149 - LTR16A LTR ERVL -6 444 103 2016 156 37 0 chrX 22238991 22239343 -154734797 + MLT1A1 LTR MaLR 1 365 0 1445 271 70 22 chrX 22239343 22239440 -154734700 - LTR16A LTR ERVL -347 103 12 419 319 83 0 chrX 22240090 22240247 -154733893 - MIR SINE MIR -27 235 66 261 139 0 0 chrX 22240279 22240322 -154733818 + (TG)n Simple_repeat Simple_repeat 2 44 0 24 77 0 0 chrX 22241758 22241810 -154732330 + AT_rich Low_complexity Low_complexity 1 52 0 212 282 0 0 chrX 22242289 22242360 -154731780 + (TCTG)n Simple_repeat Simple_repeat 4 74 0 28 61 0 0 chrX 22242615 22242664 -154731476 + AT_rich Low_complexity Low_complexity 1 49 0 2403 162 42 23 chrX 22244541 22245017 -154729123 + MLT1D LTR MaLR 21 505 0 5972 20 1 0 chrX 22245527 22246225 -154727915 - L1PA3 LINE L1 -1393 4753 4055 7722 16 2 8 chrX 22246225 22247669 -154726471 + L1PA3 LINE L1 4738 6155 0 456 303 87 5 chrX 22247685 22247870 -154726270 + MIR SINE MIR 58 257 -5 337 244 70 46 chrX 22247879 22248017 -154726123 + MIR SINE MIR 19 159 -67 184 188 0 0 chrX 22250317 22250349 -154723791 - MIR SINE MIR -112 150 119 14972 133 13 15 chrX 22252327 22252622 -154721518 + Tigger1 DNA MER2_type 1 295 -2123 1559 181 0 36 chrX 22252622 22252931 -154721209 + AluJo SINE Alu 5 302 -10 5463 134 8 6 chrX 22252933 22254207 -154719933 - L1PA16 LINE L1 -6 6160 4874 14972 133 13 15 chrX 22254207 22256330 -154717810 + Tigger1 DNA MER2_type 296 2417 -1 2004 88 0 4 chrX 22256958 22257272 -154716868 - L1PA8 LINE L1 0 6172 5897 1520 102 0 0 chrX 22257549 22257775 -154716365 - L1MA2 LINE L1 0 6304 6079 336 64 0 0 chrX 22257908 22257955 -154716185 + (GA)n Simple_repeat Simple_repeat 2 48 0 30 27 0 0 chrX 22257959 22257996 -154716144 + AT_rich Low_complexity Low_complexity 1 37 0 261 0 0 0 chrX 22258005 22258034 -154716106 + (GA)n Simple_repeat Simple_repeat 2 30 0 2208 146 3 22 chrX 22258034 22258396 -154715744 - MLT2D LTR ERVL -57 357 3 1274 256 53 18 chrX 22259542 22259882 -154714258 - MLT1F LTR MaLR -5 537 186 543 321 25 5 chrX 22260590 22260786 -154713354 + MIR SINE MIR 7 206 -56 1435 185 72 70 chrX 22260824 22261197 -154712943 - MLT1A2 LTR MaLR 0 374 1 368 321 103 12 chrX 22262496 22262661 -154711479 - MIR SINE MIR -51 211 32 291 157 0 0 chrX 22262746 22262797 -154711343 + (TG)n Simple_repeat Simple_repeat 2 52 0 2295 75 3 0 chrX 22263028 22263354 -154710786 - AluSp SINE Alu 0 327 1 2656 20 3 0 chrX 22264060 22264361 -154709779 - AluY SINE Alu -9 302 1 24 0 0 0 chrX 22265320 22265344 -154708796 + AT_rich Low_complexity Low_complexity 1 24 0 218 270 95 0 chrX 22265776 22265839 -154708301 - L2 LINE L2 0 3313 3245 215 299 15 0 chrX 22265993 22266060 -154708080 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 347 229 57 19 chrX 22266239 22266344 -154707796 + L2 LINE L2 3202 3310 -3 31 0 0 0 chrX 22267092 22267123 -154707017 + AT_rich Low_complexity Low_complexity 1 31 0 193 315 176 28 chrX 22267725 22267833 -154706307 - MIR SINE MIR -122 140 17 23 0 0 0 chrX 22268144 22268167 -154705973 + AT_rich Low_complexity Low_complexity 1 23 0 262 314 9 19 chrX 22269510 22269615 -154704525 - MER5B DNA MER1_type -58 120 17 305 24 24 0 chrX 22270001 22270043 -154704097 + (CA)n Simple_repeat Simple_repeat 2 44 0 225 0 0 0 chrX 22270043 22270068 -154704072 + (GA)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chrX 22270329 22270355 -154703785 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1910 152 4 0 chrX 22270357 22270634 -154703506 - AluSx SINE Alu -34 278 1 210 167 0 56 chrX 22270719 22270773 -154703367 + GA-rich Low_complexity Low_complexity 2 52 0 274 292 115 19 chrX 22271000 22271209 -154702931 + L1ME4a LINE L1 5826 6054 -67 606 199 56 56 chrX 22271213 22271374 -154702766 - MER106A DNA MER1_type -75 161 1 183 268 54 54 chrX 22271388 22271444 -154702696 - MER5A DNA MER1_type -75 114 59 1450 136 34 23 chrX 22271988 22272253 -154701887 - L1PA16 LINE L1 0 6166 5899 207 261 72 63 chrX 22273745 22273856 -154700284 + L2 LINE L2 2197 2308 -1006 192 243 29 71 chrX 22274234 22274304 -154699836 - L2 LINE L2 -1 3271 3205 605 333 82 11 chrX 22274312 22274591 -154699549 + L2 LINE L2 2506 2804 -510 23 33 0 0 chrX 22275469 22275499 -154698641 + AT_rich Low_complexity Low_complexity 1 30 0 566 324 153 48 chrX 22276354 22276516 -154697624 - L2 LINE L2 -474 2840 2696 1764 127 0 4 chrX 22276516 22276769 -154697371 + AluSx SINE Alu 49 300 -12 566 324 153 48 chrX 22276769 22276827 -154697313 - L2 LINE L2 -618 2696 2645 685 250 23 11 chrX 22276827 22277003 -154697137 + MER5B DNA MER1_type 1 178 0 566 324 153 48 chrX 22277003 22277732 -154696408 - L2 LINE L2 -669 2645 1791 597 200 18 0 chrX 22277779 22277889 -154696251 - MER5A DNA MER1_type -77 112 1 2286 102 0 0 chrX 22279423 22279718 -154694422 - AluSg SINE Alu -15 295 1 311 291 107 5 chrX 22279739 22279935 -154694205 - L1MC4 LINE L1 -1 8041 7826 268 327 9 9 chrX 22279981 22280091 -154694049 - L1ME2 LINE L1 -10 6154 6045 223 312 21 54 chrX 22280339 22280432 -154693708 - MIR3 SINE MIR -11 197 108 251 325 51 0 chrX 22280478 22280595 -154693545 - MIR SINE MIR -17 245 123 25 0 0 0 chrX 22280659 22280684 -154693456 + AT_rich Low_complexity Low_complexity 1 25 0 185 315 22 11 chrX 22281613 22281702 -154692438 - MIR SINE MIR -54 208 119 434 86 0 0 chrX 22282975 22283033 -154691107 + L1P LINE L1 4895 4952 -1194 * 1506 231 22 66 chrX 22283029 22283528 -154690612 - L1ME3A LINE L1 -68 6102 5626 22 35 0 0 chrX 22283533 22283562 -154690578 + AT_rich Low_complexity Low_complexity 1 29 0 2304 180 11 7 chrX 22283583 22284022 -154690118 - L1MA6 LINE L1 -36 6264 5824 21 0 0 0 chrX 22284027 22284048 -154690092 + AT_rich Low_complexity Low_complexity 1 21 0 14416 185 32 15 chrX 22284048 22284955 -154689185 - L1MA2 LINE L1 0 7723 6833 354 98 0 0 chrX 22284955 22285006 -154689134 + (TA)n Simple_repeat Simple_repeat 2 52 0 14416 185 32 15 chrX 22285006 22288428 -154685712 - L1MA2 LINE L1 -890 6833 3305 18133 37 1 0 chrX 22288495 22291484 -154682656 - L1PA5 LINE L1 -2 6152 3161 458 99 0 12 chrX 22291485 22291566 -154682574 - L1M1 LINE L1 -5081 2484 2405 2218 98 21 0 chrX 22291566 22291903 -154682237 + L1M1 LINE L1 2473 2816 -4749 * 5137 199 20 3 chrX 22291895 22292836 -154681304 - L1MA2 LINE L1 -6042 1523 567 219 369 0 0 chrX 22293372 22293437 -154680703 - L2 LINE L2 -4 3309 3245 21 57 0 0 chrX 22293438 22293473 -154680667 + AT_rich Low_complexity Low_complexity 1 35 0 892 260 78 72 chrX 22293527 22294012 -154680128 - LTR16C LTR ERVL -3 488 1 284 341 87 61 chrX 22294704 22295008 -154679132 - MLT1K LTR MaLR -2 586 268 180 0 0 0 chrX 22295008 22295028 -154679112 + (CAA)n Simple_repeat Simple_repeat 2 21 0 284 341 87 61 chrX 22295028 22295116 -154679024 - MLT1K LTR MaLR -320 268 184 248 276 55 79 chrX 22295406 22295533 -154678607 + L2 LINE L2 1804 1927 -1387 658 241 36 91 chrX 22295542 22295795 -154678345 + MIR SINE MIR 24 262 0 317 379 61 29 chrX 22295813 22296370 -154677770 + L2 LINE L2 1954 3252 -20 24 32 0 0 chrX 22296449 22296480 -154677660 + AT_rich Low_complexity Low_complexity 1 31 0 2064 94 47 0 chrX 22297536 22297812 -154676328 - AluSg SINE Alu -21 289 1 991 286 110 18 chrX 22297923 22298315 -154675825 + LTR33 LTR ERVL 1 428 -93 2252 98 6 22 chrX 22298948 22299264 -154674876 + AluSq SINE Alu 1 311 -2 1372 273 46 37 chrX 22299278 22299733 -154674407 - LTR16C LTR ERVL 0 491 33 1390 156 92 50 chrX 22300307 22300589 -154673551 - AluJo SINE Alu -18 294 1 619 293 104 47 chrX 22301336 22301653 -154672487 - MLT1J2 LTR MaLR -3 447 113 556 320 89 5 chrX 22302686 22302889 -154671251 - MIR SINE MIR 0 262 43 22 70 0 0 chrX 22303762 22303805 -154670335 + AT_rich Low_complexity Low_complexity 1 43 0 2284 81 0 0 chrX 22303877 22304162 -154669978 + AluSg SINE Alu 1 285 -25 24 0 0 0 chrX 22305722 22305746 -154668394 + AT_rich Low_complexity Low_complexity 1 24 0 1917 154 20 0 chrX 22305900 22306206 -154667934 - AluSx SINE Alu 0 312 1 1519 265 42 49 chrX 22306214 22306762 -154667378 + L1MB7 LINE L1 94 637 -5905 728 208 58 10 chrX 22306758 22306965 -154667175 + L1MB7 LINE L1 1254 1470 -5072 * 5771 197 77 23 chrX 22306962 22308326 -154665814 + L1MB7 LINE L1 2974 4263 -2381 2277 90 0 0 chrX 22308326 22308626 -154665514 + AluY SINE Alu 1 300 -11 930 258 83 40 chrX 22308630 22309076 -154665064 + MLT1C LTR MaLR 3 467 0 5771 197 77 23 chrX 22309076 22310075 -154664065 + L1MB7 LINE L1 4265 5504 -1140 * 5903 130 20 11 chrX 22310072 22311061 -154663079 + L1MA7 LINE L1 5294 6291 0 32 67 0 0 chrX 22311061 22311121 -154663019 + AT_rich Low_complexity Low_complexity 1 60 0 3411 200 59 28 chrX 22311121 22311717 -154662423 + L1MB7 LINE L1 5492 6068 -614 1687 105 37 59 chrX 22311717 22312041 -154662099 - L1MA3 LINE L1 0 6305 5989 3411 200 59 28 chrX 22312041 22312575 -154661565 + L1MB7 LINE L1 6068 6659 -23 657 260 224 18 chrX 22313019 22313358 -154660782 - MLT1I LTR MaLR 0 409 1 467 352 0 14 chrX 22314386 22314531 -154659609 + MIR3 SINE MIR 10 152 -56 489 403 24 10 chrX 22314538 22314836 -154659304 - L2 LINE L2 -453 2861 2560 21 0 0 0 chrX 22314852 22314873 -154659267 + AT_rich Low_complexity Low_complexity 1 21 0 240 383 129 0 chrX 22314943 22315152 -154658988 - L2 LINE L2 -1165 2149 1914 511 269 107 81 chrX 22315282 22315580 -154658560 - MLT1H LTR MaLR -243 306 1 324 353 131 22 chrX 22315580 22315946 -154658194 - L2 LINE L2 -1417 1897 1492 1198 235 69 78 chrX 22316075 22316565 -154657575 - LTR33A LTR ERVL -31 492 7 251 225 28 28 chrX 22316772 22316843 -154657297 - MIR SINE MIR -57 151 81 222 62 0 0 chrX 22317223 22317255 -154656885 + (ATG)n Simple_repeat Simple_repeat 2 33 0 556 353 35 0 chrX 22317256 22317488 -154656652 - MIR SINE MIR -10 252 13 339 85 0 0 chrX 22317783 22317830 -154656310 + (CA)n Simple_repeat Simple_repeat 2 48 0 435 144 156 0 chrX 22318621 22318711 -154655429 - L1MA10 LINE L1 -4 6330 6227 30 59 0 0 chrX 22318798 22318849 -154655291 + AT_rich Low_complexity Low_complexity 1 51 0 2410 87 0 0 chrX 22319870 22320179 -154653961 - AluSg1 SINE Alu 0 309 1 336 300 0 0 chrX 22320243 22320343 -154653797 - L1ME LINE L1 -453 5668 5569 395 286 60 38 chrX 22322120 22322305 -154651835 + L2 LINE L2 3119 3307 -6 393 335 99 17 chrX 22323390 22323623 -154650517 + L2 LINE L2 2138 2389 -925 1635 165 113 22 chrX 22323648 22324011 -154650129 - MSTD LTR MaLR 0 396 1 831 194 129 5 chrX 22324011 22324212 -154649928 - MSTD-int LTR MaLR 0 1735 1510 920 70 86 0 chrX 22324315 22324443 -154649697 - MER85 DNA T2_type 0 139 1 2683 88 0 8 chrX 22324606 22324990 -154649150 - L1PA13 LINE L1 0 6163 5783 195 301 0 0 chrX 22326139 22326212 -154647928 + (TA)n Simple_repeat Simple_repeat 2 74 0 388 370 82 23 chrX 22326448 22326926 -154647214 + L2 LINE L2 1536 2041 -1273 242 273 0 0 chrX 22326949 22327004 -154647136 + MIR SINE MIR 194 248 -14 2334 258 87 27 chrX 22327035 22328060 -154646080 - L2 LINE L2 0 3313 2230 330 338 113 54 chrX 22328101 22328580 -154645560 + L2 LINE L2 2111 2617 -697 381 280 98 64 chrX 22328946 22329182 -154644958 + MARNA DNA Mariner 147 390 -196 1309 154 50 75 chrX 22329285 22329564 -154644576 + AluJo SINE Alu 11 282 -30 22 0 0 0 chrX 22329564 22329586 -154644554 + AT_rich Low_complexity Low_complexity 1 22 0 603 107 0 0 chrX 22329872 22329956 -154644184 + AluSg/x SINE Alu 211 294 -15 405 0 0 0 chrX 22330873 22330918 -154643222 + (T)n Simple_repeat Simple_repeat 1 45 0 30 27 0 0 chrX 22331129 22331166 -154642974 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chrX 22331232 22331254 -154642886 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 22331416 22331438 -154642702 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chrX 22331682 22331728 -154642412 + (T)n Simple_repeat Simple_repeat 1 46 0 930 283 54 7 chrX 22333066 22333342 -154640798 + L3 LINE CR1 559 847 -730 752 313 53 32 chrX 22333370 22333750 -154640390 - LTR16A LTR ERVL -6 444 57 723 251 26 37 chrX 22333786 22333977 -154640163 + MER5A DNA MER1_type 1 189 0 307 0 47 0 chrX 22334063 22334106 -154640034 + (CA)n Simple_repeat Simple_repeat 2 46 0 362 268 163 0 chrX 22334175 22334298 -154639842 + L3 LINE CR1 1339 1481 -96 220 347 80 0 chrX 22334633 22334708 -154639432 + L2 LINE L2 3188 3268 -4 237 330 54 0 chrX 22335875 22335987 -154638153 - MIR SINE MIR -73 135 18 188 316 88 0 chrX 22336420 22336477 -154637663 - L2 LINE L2 -23 3290 3229 2311 77 0 10 chrX 22338824 22339124 -154635016 - AluSg1 SINE Alu -9 300 4 2246 244 80 32 chrX 22340448 22341162 -154632978 - MER20B DNA MER1_type -2 781 34 927 339 39 6 chrX 22341718 22342081 -154632059 + L3 LINE CR1 399 773 -804 25 51 0 0 chrX 22342583 22342622 -154631518 + AT_rich Low_complexity Low_complexity 1 39 0 206 308 0 13 chrX 22343782 22343860 -154630280 + MIR SINE MIR 91 167 -95 2208 97 6 3 chrX 22343989 22344309 -154629831 - L1PA13 LINE L1 -3 6160 5840 1558 126 47 0 chrX 22344309 22344563 -154629577 - L1PA13 LINE L1 -577 5591 5326 24 0 0 0 chrX 22345778 22345802 -154628338 + AT_rich Low_complexity Low_complexity 1 24 0 337 280 10 10 chrX 22346404 22346504 -154627636 + MIR SINE MIR 45 144 -64 1449 217 6 97 chrX 22348620 22349094 -154625046 - LTR16A LTR ERVL -6 444 14 850 199 94 0 chrX 22349139 22349310 -154624830 - MER5A DNA MER1_type -2 187 1 275 271 0 0 chrX 22350519 22350589 -154623551 - MER116 DNA Mariner -8 72 3 243 0 0 0 chrX 22351405 22351432 -154622708 + (TA)n Simple_repeat Simple_repeat 2 28 0 291 235 130 52 chrX 22351630 22351745 -154622395 - MIR SINE MIR -66 142 19 33 0 0 0 chrX 22353985 22354018 -154620122 + AT_rich Low_complexity Low_complexity 1 33 0 2185 102 0 0 chrX 22354063 22354369 -154619771 + AluSx SINE Alu 1 306 0 252 222 0 0 chrX 22354823 22354877 -154619263 - MLT1J1 LTR MaLR -48 398 345 2200 58 7 4 chrX 22356790 22357097 -154617043 + AluSc SINE Alu 5 312 0 330 216 0 0 chrX 22357427 22357501 -154616639 + (TA)n Simple_repeat Simple_repeat 1 74 0 229 273 76 0 chrX 22357518 22357584 -154616556 - L2 LINE L2 -1 3271 3201 807 142 111 42 chrX 22357641 22357831 -154616309 - MLT1A2 LTR MaLR -48 326 124 313 234 43 60 chrX 22357866 22358012 -154616128 - MER112 DNA MER1_type -38 222 78 282 73 0 0 chrX 22358012 22358053 -154616087 + (TG)n Simple_repeat Simple_repeat 2 42 0 313 234 43 60 chrX 22358053 22358090 -154616050 - MER112 DNA MER1_type -182 78 42 238 360 0 72 chrX 22358109 22358220 -154615920 - L2 LINE L2 -88 3184 3082 269 354 0 0 chrX 22358420 22358502 -154615638 - L2 LINE L2 -263 3009 2928 244 313 218 28 chrX 22358599 22358810 -154615330 + MIR SINE MIR 1 251 -11 494 325 104 67 chrX 22358882 22359421 -154614719 - L2 LINE L2 -574 2740 2182 2312 97 0 0 chrX 22359634 22359934 -154614206 + AluSx SINE Alu 1 300 -12 221 394 16 16 chrX 22360276 22360403 -154613737 + L3b LINE CR1 1111 1237 -346 190 268 0 18 chrX 22360766 22360822 -154613318 + MIR SINE MIR 162 216 -46 25 51 0 0 chrX 22360931 22360970 -154613170 + AT_rich Low_complexity Low_complexity 1 39 0 332 281 26 9 chrX 22360991 22361105 -154613035 - MIR SINE MIR -55 207 92 272 270 251 42 chrX 22361250 22361396 -154612744 - MIR SINE MIR 0 262 148 1251 136 0 114 chrX 22361396 22361660 -154612480 - MER46A DNA MER2_type -2 234 1 272 270 251 42 chrX 22361660 22361728 -154612412 - MIR SINE MIR -114 148 3 4759 109 1 1 chrX 22362102 22362787 -154611353 - L1PA15 LINE L1 0 6165 5481 2302 97 3 0 chrX 22362787 22363096 -154611044 - AluSq SINE Alu -3 310 1 502 303 8 0 chrX 22363668 22363790 -154610350 + L2 LINE L2 3190 3312 -1 635 319 86 0 chrX 22364201 22364433 -154609707 + MIR SINE MIR 11 262 0 21 0 0 0 chrX 22365546 22365567 -154608573 + AT_rich Low_complexity Low_complexity 1 21 0 1263 281 157 16 chrX 22366728 22367218 -154606922 - MLT1G1 LTR MaLR 0 595 1 1526 195 34 40 chrX 22368035 22368472 -154605668 + L1MB3 LINE L1 5804 6298 -6 1339 184 36 0 chrX 22368489 22368739 -154605401 + AluJo SINE Alu 1 259 -53 319 113 0 0 chrX 22368760 22368813 -154605327 + L1MB4 LINE L1 6128 6180 0 199 340 100 0 chrX 22368938 22369038 -154605102 + MIR SINE MIR 38 147 -61 350 274 192 27 chrX 22369064 22369210 -154604930 + MER5A DNA MER1_type 19 188 -1 307 195 41 0 chrX 22370198 22370321 -154603819 + GA-rich Low_complexity Low_complexity 2 129 0 216 67 0 0 chrX 22370811 22370841 -154603299 + (CA)n Simple_repeat Simple_repeat 2 31 0 540 252 75 75 chrX 22371432 22371710 -154602430 + MLT1H LTR MaLR 39 316 -233 2107 110 51 46 chrX 22374033 22374406 -154599734 - THE1C LTR MaLR 0 375 1 206 239 134 30 chrX 22375954 22376021 -154598119 - MIR3 SINE MIR -10 198 125 301 207 64 74 chrX 22377031 22377158 -154596982 - MLT1G1 LTR MaLR -2 580 426 280 264 44 22 chrX 22377317 22377408 -154596732 - MLT1H LTR MaLR -375 174 82 949 269 76 66 chrX 22379313 22379799 -154594341 - LTR33 LTR ERVL -4 517 27 216 0 0 0 chrX 22379813 22379837 -154594303 + (A)n Simple_repeat Simple_repeat 1 24 0 1873 151 7 7 chrX 22380119 22380417 -154593723 + AluJb SINE Alu 5 302 -10 336 227 15 0 chrX 22380887 22380953 -154593187 - L2 LINE L2 -1 3312 3246 1662 155 0 67 chrX 22381922 22382238 -154591902 + AluJo SINE Alu 1 295 -17 509 206 157 94 chrX 22383032 22383255 -154590885 + L2 LINE L2 3075 3311 -2 512 196 312 0 chrX 22383376 22383514 -154590626 - MER5A DNA MER1_type 0 189 9 182 203 81 68 chrX 22383769 22383843 -154590297 - MIR3 SINE MIR -53 155 81 933 218 22 53 chrX 22386052 22386277 -154587863 + MER20 DNA MER1_type 1 218 -1 364 284 0 10 chrX 22386904 22387006 -154587134 - MER5B DNA MER1_type -72 106 6 373 279 44 44 chrX 22387034 22387170 -154586970 + MIR SINE MIR 29 164 -98 253 82 41 0 chrX 22387941 22387990 -154586150 + (TA)n Simple_repeat Simple_repeat 1 51 0 235 143 0 36 chrX 22387992 22388048 -154586092 + Charlie5 DNA MER1_type 2501 2554 -58 353 306 84 84 chrX 22388148 22388423 -154585717 - L2 LINE L2 -17 3255 2981 1544 172 56 0 chrX 22389069 22389371 -154584769 - MER33 DNA MER1_type 0 324 6 22 0 0 0 chrX 22390231 22390253 -154583887 + AT_rich Low_complexity Low_complexity 1 22 0 705 188 7 0 chrX 22390433 22390571 -154583569 - L1PB4 LINE L1 -3 6153 6015 225 325 165 34 chrX 22391242 22391448 -154582692 - L2 LINE L2 -540 2774 2542 1742 222 20 96 chrX 22391655 22392205 -154581935 - MER74B LTR ERVL -59 563 56 662 224 44 11 chrX 22392233 22392416 -154581724 - MER5A DNA MER1_type 0 189 1 310 325 89 46 chrX 22392417 22392719 -154581421 - L2 LINE L2 -962 2352 2038 1581 114 42 4 chrX 22392880 22393144 -154580996 - L1MA8 LINE L1 -6 6285 6012 908 60 46 7 chrX 22393306 22393457 -154580683 + L1PA10 LINE L1 5911 6067 -101 3569 35 0 0 chrX 22393457 22393890 -154580250 + L1PA4 LINE L1 5717 6149 -6 570 179 32 16 chrX 22393899 22394022 -154580118 + L1PA3 LINE L1 6028 6152 -3 282 311 68 47 chrX 22394186 22394507 -154579633 + L2 LINE L2 1989 2316 -998 301 365 139 5 chrX 22394623 22394831 -154579309 + L2 LINE L2 2323 2558 -756 236 319 129 37 chrX 22394893 22395056 -154579084 + MIR SINE MIR 84 261 -1 227 319 198 39 chrX 22395056 22395288 -154578852 + L2 LINE L2 2589 2857 -457 676 0 0 0 chrX 22395540 22395618 -154578522 - L1PA3 LINE L1 -3 6152 6075 187 327 36 0 chrX 22396689 22396744 -154577396 - L2 LINE L2 -2 3270 3214 183 80 0 0 chrX 22396827 22396852 -154577288 + (GA)n Simple_repeat Simple_repeat 2 26 0 363 284 90 8 chrX 22397072 22397206 -154576934 - MLT1H LTR MaLR -23 526 382 1995 178 80 45 chrX 22397415 22397903 -154576237 + MLT1D LTR MaLR 1 505 0 277 172 0 0 chrX 22397921 22397979 -154576161 + MER113 DNA MER1_type? 55 112 -409 375 251 92 46 chrX 22399263 22399443 -154574697 + MIR3 SINE MIR 11 194 -63 1696 82 133 4 chrX 22400639 22400894 -154573246 + AluSg1 SINE Alu 1 288 -21 21 0 0 0 chrX 22401400 22401421 -154572719 + AT_rich Low_complexity Low_complexity 1 21 0 841 206 32 9 chrX 22401422 22401640 -154572500 + L1MD3 LINE L1 7773 7995 0 2429 87 0 0 chrX 22403205 22403516 -154570624 + AluY SINE Alu 1 311 0 433 280 129 24 chrX 22403545 22403763 -154570377 + MIR SINE MIR 17 253 -9 315 337 70 43 chrX 22404652 22404839 -154569301 + HAL1 LINE L1 51 242 -2265 912 287 26 51 chrX 22404889 22405241 -154568899 - LTR16C LTR ERVL -105 386 44 1029 103 0 6 chrX 22405498 22405654 -154568486 - L1PA14 LINE L1 -2 6159 6005 1168 199 14 0 chrX 22405756 22405972 -154568168 + MER20 DNA MER1_type 1 219 0 450 191 106 0 chrX 22405994 22406088 -154568052 + MER3 DNA MER1_type 16 119 -90 229 274 39 0 chrX 22406132 22406183 -154567957 - L2 LINE L2 -86 3186 3134 21 36 0 0 chrX 22406183 22406211 -154567929 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chrX 22406352 22406392 -154567748 + (CA)n Simple_repeat Simple_repeat 2 41 0 229 218 103 58 chrX 22407147 22407234 -154566906 + MLT1F1 LTR MaLR 35 125 -442 2126 204 20 6 chrX 22407234 22407728 -154566412 + L1MD3 LINE L1 7410 7910 -85 518 229 6 25 chrX 22407817 22407974 -154566166 - LTR37A LTR ERV1 -5 421 268 336 275 0 11 chrX 22407989 22408080 -154566060 + L1MC4 LINE L1 6614 6703 -1339 * 344 169 135 22 chrX 22408005 22408094 -154566046 - L1MC4 LINE L1 -1339 6703 6605 378 173 49 0 chrX 22408328 22408409 -154565731 + L1MD1 LINE L1 1911 1995 -4545 368 283 99 0 chrX 22408550 22408702 -154565438 + LTR40b LTR ERVL 194 360 -102 307 287 11 11 chrX 22408715 22408802 -154565338 + L1MD1 LINE L1 3364 3450 -3090 4586 209 35 59 chrX 22408802 22409438 -154564702 + L1MD1 LINE L1 4109 4759 -1877 338 206 0 0 chrX 22409438 22409506 -154564634 - MER47A DNA MER2_type 0 366 299 4586 209 35 59 chrX 22409506 22411396 -154562744 + L1MD1 LINE L1 4759 6636 0 225 307 53 13 chrX 22411424 22411499 -154562641 - MIR3 SINE MIR -35 173 96 206 196 18 18 chrX 22412011 22412067 -154562073 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 381 269 51 46 chrX 22412069 22412167 -154561973 - L1MC4 LINE L1 -1882 5926 5830 2466 150 58 16 chrX 22412167 22412615 -154561525 - MLT1C LTR MaLR 0 467 1 381 269 51 46 chrX 22412615 22412713 -154561427 - L1MC4 LINE L1 -1978 5830 5729 371 311 8 0 chrX 22412952 22413074 -154561066 + L1MC/D LINE L1 4712 4834 -1312 2303 75 18 0 chrX 22413088 22413398 -154560742 + AluSq SINE Alu 1 315 0 524 298 66 52 chrX 22413743 22414259 -154559881 + L1MC/D LINE L1 5257 5779 -2029 22 35 0 0 chrX 22414379 22414408 -154559732 + AT_rich Low_complexity Low_complexity 1 29 0 2176 124 8 6 chrX 22415421 22415783 -154558357 - Tigger2 DNA MER2_type 0 2718 2356 274 325 26 0 chrX 22416160 22416237 -154557903 + MER5A DNA MER1_type 34 112 -77 227 186 0 0 chrX 22416673 22416716 -154557424 - Tigger2 DNA MER2_type -10 2708 2666 2686 23 3 0 chrX 22416784 22417088 -154557052 - AluY SINE Alu -5 306 2 260 169 0 17 chrX 22418060 22418119 -154556021 + (TA)n Simple_repeat Simple_repeat 1 58 0 358 248 215 13 chrX 22418246 22418395 -154555745 + MER5A DNA MER1_type 11 189 0 429 318 53 0 chrX 22419112 22419244 -154554896 - L2 LINE L2 -5 3267 3129 23 0 0 0 chrX 22419931 22419954 -154554186 + AT_rich Low_complexity Low_complexity 1 23 0 2426 85 0 0 chrX 22420359 22420665 -154553475 - AluY SINE Alu -5 306 1 22 0 0 0 chrX 22420665 22420687 -154553453 + AT_rich Low_complexity Low_complexity 1 22 0 722 229 23 23 chrX 22421450 22421625 -154552515 - MER63A DNA MER1_type -34 176 2 205 208 0 21 chrX 22422017 22422065 -154552075 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 29 0 0 0 chrX 22422130 22422159 -154551981 + AT_rich Low_complexity Low_complexity 1 29 0 487 223 123 0 chrX 22422383 22422513 -154551627 + MER5B DNA MER1_type 25 170 -8 1031 153 0 47 chrX 22424279 22424475 -154549665 - AluJo SINE Alu 0 329 140 1826 80 0 0 chrX 22424475 22424699 -154549441 - AluSg/x SINE Alu -16 294 71 1031 153 0 47 chrX 22424699 22424719 -154549421 - AluJo SINE Alu -189 140 121 672 205 0 8 chrX 22424740 22424862 -154549278 - AluJo SINE Alu -191 121 1 337 162 54 40 chrX 22424864 22424938 -154549202 - MER94 DNA DNA -59 75 1 195 273 91 0 chrX 22425103 22425158 -154548982 - L2 LINE L2 -19 3294 3235 324 202 21 11 chrX 22426212 22426306 -154547834 + MER53 DNA DNA 95 189 0 1815 162 0 17 chrX 22426588 22426884 -154547256 - AluJb SINE Alu -21 291 1 22836 31 0 0 chrX 22429699 22432591 -154541549 - L1P LINE L1 -2026 4120 1228 7390 20 0 1 chrX 22432591 22433643 -154540497 + L1HS LINE L1 5105 6155 0 189 0 0 0 chrX 22433648 22433669 -154540471 + (A)n Simple_repeat Simple_repeat 1 21 0 306 341 23 39 chrX 22433800 22433929 -154540211 - L2 LINE L2 -2 3270 3144 8583 21 2 0 chrX 22434735 22435786 -154538354 + L1P LINE L1 4090 5142 -1004 221 179 0 0 chrX 22435941 22435980 -154538160 - L2 LINE L2 -63 3209 3171 1055 308 66 62 chrX 22436687 22437669 -154536471 + L2 LINE L2 1304 2289 -1025 192 302 31 62 chrX 22437676 22437772 -154536368 + L2 LINE L2 2576 2668 -646 * 343 312 33 65 chrX 22437745 22437960 -154536180 + L2 LINE L2 2871 3078 -194 789 235 33 0 chrX 22438205 22438388 -154535752 - MER5A DNA MER1_type 0 189 1 249 33 0 0 chrX 22438484 22438514 -154535626 + (CTA)n Simple_repeat Simple_repeat 3 32 0 372 297 115 14 chrX 22438568 22438716 -154535424 - MIR SINE MIR -82 180 18 1814 193 0 0 chrX 22438957 22439253 -154534887 + AluJb SINE Alu 1 296 -16 613 248 68 61 chrX 22440033 22440232 -154533908 + LTR16C LTR ERVL 144 347 -144 2296 100 7 0 chrX 22440232 22440531 -154533609 - AluSx SINE Alu -11 301 1 613 248 68 61 chrX 22440531 22440609 -154533531 + LTR16C LTR ERVL 347 423 -68 857 162 7 0 chrX 22442831 22442973 -154531167 + FLAM_C SINE Alu 1 143 0 626 262 33 22 chrX 22443153 22443336 -154530804 - MER5A DNA MER1_type -4 185 1 214 322 28 55 chrX 22443366 22443512 -154530628 + MIR3 SINE MIR 17 160 -48 206 32 32 0 chrX 22444602 22444633 -154529507 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 209 237 13 66 chrX 22445274 22445350 -154528790 + MIR SINE MIR 181 252 -10 475 285 62 0 chrX 22445576 22445706 -154528434 + MIR SINE MIR 107 244 -18 485 261 36 0 chrX 22446712 22446850 -154527290 - MER39 LTR ERV1 -3 704 562 402 216 121 60 chrX 22446963 22447162 -154526978 - MER39 LTR ERV1 -172 535 325 2065 105 49 7 chrX 22447267 22447553 -154526587 - AluSg SINE Alu -12 298 1 262 125 0 21 chrX 22448005 22448053 -154526087 - MLT1J LTR MaLR -52 459 413 2174 103 10 6 chrX 22448139 22448450 -154525690 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 22448450 22448473 -154525667 + AT_rich Low_complexity Low_complexity 1 23 0 358 310 17 0 chrX 22448601 22448717 -154525423 - MLT1J2 LTR MaLR -318 132 15 662 260 101 36 chrX 22449039 22449258 -154524882 - MIR SINE MIR -27 235 3 326 356 54 7 chrX 22449274 22449423 -154524717 + L2 LINE L2 2936 3091 -181 1372 166 91 40 chrX 22449542 22449799 -154524341 - Charlie5 DNA MER1_type 0 2624 2341 3776 57 2 0 chrX 22449799 22450271 -154523869 + L1PA5 LINE L1 5682 6154 0 1372 166 91 40 chrX 22450271 22450386 -154523754 - Charlie5 DNA MER1_type -283 2341 2233 469 222 0 32 chrX 22450393 22450519 -154523621 - MER3 DNA MER1_type -87 122 48 402 307 8 39 chrX 22451691 22451818 -154522322 + L2 LINE L2 3172 3294 -19 355 336 148 0 chrX 22452235 22452357 -154521783 + MIR3 SINE MIR 20 159 -49 337 267 12 0 chrX 22452438 22452524 -154521616 - MER117 DNA MER1_type -109 88 2 322 267 267 0 chrX 22452680 22452785 -154521355 - MER91C DNA MER1_type 0 140 8 321 340 75 34 chrX 22453097 22453244 -154520896 - L2 LINE L2 0 3313 3161 2220 170 30 2 chrX 22453247 22453647 -154520493 + Tigger4(Zombi) DNA MER2_type 1 411 -2320 1076 202 0 0 chrX 22454573 22454756 -154519384 + MER5A DNA MER1_type 7 189 0 183 42 0 0 chrX 22455374 22455398 -154518742 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 326 21 11 chrX 22455540 22455635 -154518505 + L2 LINE L2 2934 3029 -243 1360 149 42 4 chrX 22456244 22456506 -154517634 - L1MA8 LINE L1 -8 6283 6012 234 250 0 0 chrX 22456552 22456604 -154517536 - MARNA DNA Mariner -97 489 438 740 274 17 17 chrX 22457581 22457756 -154516384 - MER5A DNA MER1_type -13 176 2 188 79 53 0 chrX 22457759 22457797 -154516343 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 438 248 27 0 chrX 22457854 22457966 -154516174 - MER5A DNA MER1_type -74 104 2 22 0 0 0 chrX 22458199 22458221 -154515919 + AT_rich Low_complexity Low_complexity 1 22 0 1457 132 4 18 chrX 22458358 22458586 -154515554 - AluJb SINE Alu -4 308 84 2285 97 0 13 chrX 22458974 22459273 -154514867 + AluSq SINE Alu 3 297 -16 2543 49 0 3 chrX 22459455 22459760 -154514380 + AluY SINE Alu 1 304 -7 1803 122 83 47 chrX 22459884 22460246 -154513894 - THE1C LTR MaLR 0 375 1 320 282 71 31 chrX 22461574 22461716 -154512424 + MIR SINE MIR 40 185 -77 414 0 0 0 chrX 22462470 22462516 -154511624 + (TG)n Simple_repeat Simple_repeat 2 47 0 181 390 53 22 chrX 22462714 22463037 -154511103 + L2 LINE L2 2560 2892 -422 264 303 9 73 chrX 22463140 22463249 -154510891 - MIR SINE MIR -9 253 152 502 163 226 37 chrX 22464145 22464335 -154509805 - MER5C DNA MER1_type -35 289 64 205 348 127 17 chrX 22465753 22465934 -154508206 - MIR SINE MIR -13 249 49 917 255 31 12 chrX 22466443 22466698 -154507442 + MIR SINE MIR 3 262 0 11204 24 0 1 chrX 22467018 22469123 -154505017 + L1PA3 LINE L1 4072 6174 0 327 49 0 0 chrX 22469157 22469198 -154504942 + (TTATA)n Simple_repeat Simple_repeat 2 42 0 2537 60 0 7 chrX 22469627 22469929 -154504211 + AluY SINE Alu 1 300 -11 405 316 25 32 chrX 22470105 22470317 -154503823 + MIR SINE MIR 1 212 -50 745 229 33 84 chrX 22474285 22474504 -154499636 - MIR SINE MIR -1 261 57 2514 71 0 3 chrX 22474504 22474814 -154499326 + AluSc SINE Alu 1 309 0 745 229 33 84 chrX 22474814 22474869 -154499271 - MIR SINE MIR -205 57 1 180 0 0 0 chrX 22475021 22475041 -154499099 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 590 203 8 41 chrX 22476357 22476480 -154497660 - L2 LINE L2 0 3313 3195 473 316 19 58 chrX 22476947 22477153 -154496987 + MIR3 SINE MIR 6 203 -5 1505 167 14 0 chrX 22478242 22478536 -154495604 - L1 LINE L1 -1080 5066 4769 891 217 20 117 chrX 22479085 22479486 -154494654 - MER57A LTR ERV1 0 403 42 336 320 58 10 chrX 22479634 22479737 -154494403 + MIR3 SINE MIR 99 206 -2 232 248 40 84 chrX 22480100 22480226 -154493914 - MER5B DNA MER1_type -37 152 4 2226 118 3 3 chrX 22480642 22480948 -154493192 + AluSx SINE Alu 1 306 -6 24726 124 10 71 chrX 22481321 22486212 -154487928 - L1P LINE L1 -1545 4601 12 2182 79 13 44 chrX 22487681 22487997 -154486143 + AluSx SINE Alu 3 308 -4 2261 64 4 4 chrX 22488043 22488347 -154485793 + AluSc SINE Alu 1 304 0 181 292 62 0 chrX 22488542 22488590 -154485550 + MIR SINE MIR 76 126 -136 274 250 69 0 chrX 22489577 22489649 -154484491 + L2 LINE L2 3196 3272 0 2467 45 0 0 chrX 22490188 22490474 -154483666 + AluY SINE Alu 1 286 -25 26 64 0 0 chrX 22490474 22490521 -154483619 + AT_rich Low_complexity Low_complexity 1 47 0 2132 126 0 16 chrX 22491106 22491423 -154482717 + AluSx SINE Alu 1 312 0 5503 115 33 5 chrX 22492322 22493766 -154480374 - HERVH LTR ERV1 -5983 1730 1 3375 58 7 13 chrX 22493768 22494219 -154479921 - LTR7 LTR ERV1 -2 448 1 777 259 41 0 chrX 22494219 22494389 -154479751 - MIR SINE MIR -84 178 2 761 316 76 10 chrX 22494442 22494743 -154479397 - L3 LINE CR1 -4 1573 1253 1788 134 22 9 chrX 22496059 22496379 -154477761 - L1MB2 LINE L1 -1 6170 5847 493 280 51 64 chrX 22496516 22496744 -154477396 - LTR16A LTR ERVL -22 428 205 655 85 108 46 chrX 22496744 22496874 -154477266 + MER85 DNA T2_type 1 138 -1 493 280 51 64 chrX 22496874 22497077 -154477063 - LTR16A LTR ERVL -245 205 1 12106 26 7 1 chrX 22497111 22499343 -154474797 - L1PA3 LINE L1 0 6155 3915 182 255 0 78 chrX 22499690 22499741 -154474399 + L2 LINE L2 3261 3307 -6 2221 103 7 10 chrX 22500521 22500822 -154473318 - AluSx SINE Alu -12 300 1 293 306 43 24 chrX 22500867 22501013 -154473127 + MIR SINE MIR 15 164 -44 2204 96 0 0 chrX 22501563 22501868 -154472272 - AluSx SINE Alu 0 307 3 489 331 50 11 chrX 22502586 22502767 -154471373 - MIR3 SINE MIR -5 203 16 262 246 43 0 chrX 22503683 22503752 -154470388 - MIR SINE MIR -119 143 72 524 294 10 36 chrX 22503800 22503994 -154470146 - MIR SINE MIR -3 259 71 1789 180 109 0 chrX 22504264 22504648 -154469492 + MSTB1 LTR MaLR 7 432 0 2155 81 14 20 chrX 22504927 22505222 -154468918 + AluSx SINE Alu 12 304 -8 400 154 26 0 chrX 22505224 22505302 -154468838 - L1MB3 LINE L1 -167 6016 5937 * 731 181 0 0 chrX 22505301 22505445 -154468695 - L1MB3 LINE L1 -776 5370 5227 2247 110 0 0 chrX 22505772 22506071 -154468069 - AluSq SINE Alu -12 301 3 2262 104 10 0 chrX 22506792 22507239 -154466901 + AluSq SINE Alu 1 450 0 866 286 86 8 chrX 22507344 22507704 -154466436 + LTR16A1 LTR ERVL 2 389 -68 396 133 0 0 chrX 22508524 22508607 -154465533 + (TA)n Simple_repeat Simple_repeat 1 83 0 623 357 59 0 chrX 22508786 22509108 -154465032 + L2 LINE L2 1002 1342 -1972 2099 108 3 37 chrX 22510325 22510648 -154463492 - AluSx SINE Alu 0 312 1 6788 50 34 0 chrX 22510811 22512176 -154461964 + L1PA7 LINE L1 4739 6154 0 24 0 0 0 chrX 22513733 22513757 -154460383 + AT_rich Low_complexity Low_complexity 1 24 0 540 270 11 11 chrX 22514665 22514839 -154459301 - LTR16A1 LTR ERVL -2 455 282 2148 94 30 7 chrX 22514888 22515185 -154458955 - AluSq SINE Alu -9 304 1 609 259 93 5 chrX 22515219 22515412 -154458728 + MER63A DNA MER1_type 1 210 0 338 261 29 36 chrX 22515412 22515544 -154458596 - LTR16A1 LTR ERVL -276 181 51 783 210 57 0 chrX 22515916 22516092 -154458048 - MER5A DNA MER1_type 0 189 4 23 54 0 0 chrX 22516168 22516205 -154457935 + AT_rich Low_complexity Low_complexity 1 37 0 1841 162 3 0 chrX 22516500 22516784 -154457356 + AluJb SINE Alu 1 285 -27 197 344 125 10 chrX 22517453 22517549 -154456591 - L2 LINE L2 -27 3245 3139 470 355 47 0 chrX 22517611 22517822 -154456318 - MIR SINE MIR -34 228 8 4779 182 42 2 chrX 22518410 22519526 -154454614 - L1MD1 LINE L1 -28 6214 5037 1708 71 0 0 chrX 22519526 22519738 -154454402 - AluY SINE Alu -9 302 91 4779 182 42 2 chrX 22519738 22519885 -154454255 - L1MD1 LINE L1 -1205 5037 4897 548 342 71 43 chrX 22519914 22520376 -154453764 + L2 LINE L2 2257 2731 -583 2365 89 0 0 chrX 22520700 22520992 -154453148 + AluSx SINE Alu 1 292 -20 954 125 5 26 chrX 22522024 22522240 -154451900 - MER4A LTR ERV1 -134 530 261 650 111 0 10 chrX 22522240 22522339 -154451801 - MER4A LTR ERV1 -566 98 1 227 339 0 0 chrX 22522339 22522401 -154451739 - L3 LINE CR1 -472 1105 1044 1660 188 138 95 chrX 22522847 22523555 -154450585 + LTR1B LTR ERV1 7 745 -81 997 193 6 0 chrX 22523641 22523807 -154450333 + FAM SINE Alu 5 171 -4 872 157 0 0 chrX 22523865 22523986 -154450154 + FLAM_C SINE Alu 1 121 -22 587 233 28 107 chrX 22524202 22524417 -154449723 + MIR SINE MIR 48 245 -17 682 224 12 0 chrX 22525436 22525606 -154448534 - AluSx SINE Alu -134 178 7 343 322 10 58 chrX 22526026 22526234 -154447906 + MIR3 SINE MIR 1 198 -10 211 219 24 0 chrX 22526338 22526379 -154447761 + L2 LINE L2 3266 3307 -6 1168 136 48 44 chrX 22527329 22527378 -154446762 - L1MB1 LINE L1 0 6168 6121 1912 45 0 41 chrX 22527378 22527621 -154446519 - AluY SINE Alu -15 296 64 1168 136 48 44 chrX 22527621 22527799 -154446341 - L1MB1 LINE L1 -47 6121 5940 1099 295 58 59 chrX 22528581 22529170 -154444970 + L2 LINE L2 2338 2925 -389 649 323 136 3 chrX 22529564 22529880 -154444260 + L3 LINE CR1 1207 1564 -13 243 267 47 23 chrX 22529959 22530045 -154444095 + MIR3 SINE MIR 115 202 -6 672 261 113 0 chrX 22530209 22530404 -154443736 - MIR SINE MIR -6 256 40 465 279 78 25 chrX 22530408 22530612 -154443528 - MER58C DNA MER1_type 0 215 1 497 250 111 17 chrX 22530651 22530831 -154443309 - MIR SINE MIR -7 255 59 429 335 57 11 chrX 22531130 22531306 -154442834 + MIR3 SINE MIR 11 194 -14 180 0 0 0 chrX 22533814 22533834 -154440306 + (T)n Simple_repeat Simple_repeat 1 20 0 521 231 50 0 chrX 22534878 22534999 -154439141 + L2 LINE L2 3187 3313 0 369 0 0 0 chrX 22535478 22535519 -154438621 + (CA)n Simple_repeat Simple_repeat 2 42 0 2417 76 7 0 chrX 22535976 22536280 -154437860 - AluSc SINE Alu -3 306 1 994 208 23 14 chrX 22536301 22536517 -154437623 - MER20 DNA MER1_type 0 219 2 288 250 170 18 chrX 22536731 22536843 -154437297 + LTR16B LTR ERVL 323 451 -13 280 145 43 29 chrX 22537068 22537137 -154437003 + MLT1K LTR MaLR 519 588 0 2415 70 7 0 chrX 22537420 22537721 -154436419 + AluY SINE Alu 1 303 -8 189 0 0 0 chrX 22539134 22539155 -154434985 + (A)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chrX 22539201 22539227 -154434913 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chrX 22540320 22540344 -154433796 + (A)n Simple_repeat Simple_repeat 1 24 0 2579 13 7 3 chrX 22540458 22540756 -154433384 + AluY SINE Alu 1 299 -12 228 266 0 16 chrX 22541297 22541361 -154432779 - MLT1L LTR MaLR -348 267 205 275 49 24 0 chrX 22541930 22541971 -154432169 + (TC)n Simple_repeat Simple_repeat 1 42 0 2195 114 0 0 chrX 22542091 22542381 -154431759 - AluSx SINE Alu -22 290 1 1307 308 196 20 chrX 22542914 22543805 -154430335 - L2 LINE L2 -256 3057 2001 197 352 24 32 chrX 22544304 22544429 -154429711 - MIR3 SINE MIR -31 177 54 292 355 10 25 chrX 22544479 22544676 -154429464 + MER117 DNA MER1_type 3 196 -1 324 215 0 0 chrX 22544940 22545005 -154429135 + L1MD3 LINE L1 7899 7963 -32 2291 92 0 0 chrX 22545057 22545365 -154428775 - AluSx SINE Alu 0 308 1 206 359 19 10 chrX 22545365 22545468 -154428672 + MIR3 SINE MIR 101 204 -4 1081 268 45 42 chrX 22545552 22545679 -154428461 - L2 LINE L2 -11 3302 3177 2304 82 6 22 chrX 22545679 22545995 -154428145 + AluY SINE Alu 1 311 0 1081 268 45 42 chrX 22545995 22546248 -154427892 - L2 LINE L2 -136 3177 2921 2200 123 0 0 chrX 22546280 22546580 -154427560 + AluSx SINE Alu 1 300 -12 413 256 128 30 chrX 22546596 22546729 -154427411 - MIR3 SINE MIR -42 166 21 394 319 86 0 chrX 22547296 22547412 -154426728 - L2 LINE L2 -2 3270 3145 6079 40 5 4 chrX 22547588 22548331 -154425809 - L1PA5 LINE L1 0 6154 5411 605 121 0 0 chrX 22548354 22548445 -154425695 + L1MA1 LINE L1 6209 6299 -3 510 154 36 9 chrX 22549784 22549894 -154424246 - AluSg SINE Alu -197 113 1 197 213 75 100 chrX 22550415 22550495 -154423645 + MIR3 SINE MIR 15 92 -116 22 56 0 0 chrX 22550646 22550682 -154423458 + AT_rich Low_complexity Low_complexity 1 36 0 3489 131 21 4 chrX 22550684 22551226 -154422914 - L1PA16 LINE L1 -9 6157 5603 2417 99 0 6 chrX 22551226 22551540 -154422600 - AluSx SINE Alu 0 312 1 3489 131 21 4 chrX 22551540 22551555 -154422585 - L1PA16 LINE L1 -563 5603 5590 426 293 111 33 chrX 22551721 22551902 -154422238 - L2 LINE L2 0 3313 3119 504 0 0 0 chrX 22552200 22552256 -154421884 + (CA)n Simple_repeat Simple_repeat 1 56 0 1062 72 0 0 chrX 22553428 22553567 -154420573 + L1PA14 LINE L1 6021 6159 -2 231 114 0 0 chrX 22553701 22553736 -154420404 + (TAA)n Simple_repeat Simple_repeat 2 36 0 357 276 141 19 chrX 22553794 22553950 -154420190 - MIR SINE MIR -74 188 14 2231 99 0 3 chrX 22554316 22554629 -154419511 - AluSq SINE Alu 0 312 1 2392 74 0 29 chrX 22554630 22554940 -154419200 - AluY SINE Alu -7 304 4 21 0 0 0 chrX 22555102 22555123 -154419017 + AT_rich Low_complexity Low_complexity 1 21 0 222 275 77 22 chrX 22555747 22555838 -154418302 + MIR SINE MIR 118 213 -49 462 340 104 5 chrX 22555935 22556147 -154417993 + MIR SINE MIR 27 259 -3 2387 94 0 3 chrX 22556243 22556552 -154417588 - AluSg SINE Alu -2 308 1 472 310 56 29 chrX 22557360 22557686 -154416454 - MLT1L LTR MaLR -73 542 109 234 0 0 0 chrX 22558374 22558400 -154415740 + (A)n Simple_repeat Simple_repeat 1 26 0 810 147 0 7 chrX 22559223 22559366 -154414774 - L1MB7 LINE L1 -16 6168 6027 324 281 29 88 chrX 22560235 22560509 -154413631 + MIR SINE MIR 5 262 0 1624 137 82 85 chrX 22560557 22560923 -154413217 - MLT1A1 LTR MaLR 0 365 1 1582 100 14 5 chrX 22561536 22561756 -154412384 + AluSg/x SINE Alu 81 302 -10 805 154 0 31 chrX 22562422 22562552 -154411588 - FLAM_A SINE Alu -7 126 1 262 307 27 0 chrX 22562572 22562647 -154411493 - MIR SINE MIR 0 262 186 489 127 13 0 chrX 22563027 22563106 -154411034 + MADE1 DNA Mariner 1 80 0 30 0 0 0 chrX 22563273 22563303 -154410837 + AT_rich Low_complexity Low_complexity 1 30 0 305 168 19 0 chrX 22563693 22563767 -154410373 + MIR SINE MIR 102 176 -86 * 549 260 33 13 chrX 22563765 22563915 -154410225 - L2 LINE L2 -1 3312 3160 313 247 13 0 chrX 22563895 22563972 -154410168 + MIR SINE MIR 185 262 0 * 268 253 130 62 chrX 22563984 22564130 -154410010 - MIR SINE MIR -99 163 8 283 277 24 24 chrX 22564141 22564224 -154409916 + MER5B DNA MER1_type 13 95 -83 440 178 31 147 chrX 22564392 22564521 -154409619 - MER81 DNA DNA 0 114 1 1755 212 164 20 chrX 22565145 22565764 -154408376 + LTR68 LTR ERV1 1 740 0 431 368 51 63 chrX 22565764 22566615 -154407525 + L2 LINE L2 2405 3252 -20 767 100 0 0 chrX 22568869 22568979 -154405161 + AluSp/q SINE Alu 178 287 -26 2330 89 10 0 chrX 22569292 22569596 -154404544 + AluY SINE Alu 3 309 -2 280 309 88 55 chrX 22570188 22570369 -154403771 + MLT1L LTR MaLR 91 277 -338 365 295 30 77 chrX 22570384 22570618 -154403522 + L2 LINE L2 2912 3134 -179 2135 131 6 10 chrX 22571834 22572146 -154401994 + AluSx SINE Alu 1 311 -1 250 336 68 27 chrX 22572321 22572467 -154401673 + L3 LINE CR1 412 563 -1014 537 129 0 32 chrX 22572630 22572723 -154401417 - AluJ/FLAM SINE Alu -222 90 1 489 296 116 59 chrX 22572723 22573095 -154401045 + L2 LINE L2 2912 3304 -9 255 346 19 29 chrX 22573542 22573646 -154400494 + MER91A DNA MER1_type 72 174 -22 219 69 0 0 chrX 22573693 22573722 -154400418 + (TC)n Simple_repeat Simple_repeat 2 30 0 420 206 120 124 chrX 22574073 22574309 -154399831 + MLT1F LTR MaLR 292 513 -29 2296 81 3 7 chrX 22574393 22574689 -154399451 - AluSg SINE Alu -15 295 1 456 192 120 32 chrX 22574705 22574830 -154399310 + L2 LINE L2 3178 3313 0 339 283 65 0 chrX 22574877 22574969 -154399171 + MLT1L LTR MaLR 419 516 -99 2237 166 27 7 chrX 22575019 22575422 -154398718 - MSTB LTR MaLR -15 411 1 1907 91 24 44 chrX 22576196 22576492 -154397648 + AluSx SINE Alu 23 312 0 315 0 0 0 chrX 22579081 22579116 -154395024 + (TG)n Simple_repeat Simple_repeat 2 36 0 1087 139 0 6 chrX 22579289 22579454 -154394686 + FRAM SINE Alu 11 174 -2 602 256 25 19 chrX 22579472 22579632 -154394508 + MER5A DNA MER1_type 29 189 0 2231 94 0 10 chrX 22579758 22580056 -154394084 + AluSq SINE Alu 4 298 -15 207 263 0 18 chrX 22581514 22581571 -154392569 + G-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chrX 22582714 22582735 -154391405 + (A)n Simple_repeat Simple_repeat 1 21 0 319 151 27 3 chrX 22583680 22583757 -154390383 + AluS SINE Alu 1 57 -251 23 0 0 0 chrX 22583775 22583798 -154390342 + AT_rich Low_complexity Low_complexity 1 23 0 320 254 119 68 chrX 22584817 22584935 -154389205 - L2 LINE L2 0 3313 3190 299 161 0 16 chrX 22585243 22585305 -154388835 + GA-rich Low_complexity Low_complexity 1 61 0 523 209 64 0 chrX 22585396 22585506 -154388634 - L2 LINE L2 0 3313 3197 196 304 13 25 chrX 22585915 22585994 -154388146 + L2 LINE L2 2283 2360 -954 22 35 0 0 chrX 22586870 22586899 -154387241 + AT_rich Low_complexity Low_complexity 1 29 0 636 254 123 42 chrX 22586913 22587149 -154386991 + MIR SINE MIR 8 262 0 2323 123 0 0 chrX 22587192 22587501 -154386639 - AluSx SINE Alu -3 309 1 574 181 141 20 chrX 22587550 22587699 -154386441 - MIR SINE MIR -10 252 86 268 189 0 0 chrX 22587702 22587755 -154386385 - MLT2B1 LTR ERVL -3 517 465 294 164 0 0 chrX 22587755 22587810 -154386330 + (TG)n Simple_repeat Simple_repeat 1 55 0 1283 191 52 53 chrX 22587820 22588219 -154385921 - MLT2B1 LTR ERVL -71 449 1 253 0 54 0 chrX 22588275 22588312 -154385828 + (TC)n Simple_repeat Simple_repeat 2 40 0 369 0 0 0 chrX 22588312 22588353 -154385787 + (CA)n Simple_repeat Simple_repeat 1 41 0 278 301 25 49 chrX 22588398 22588561 -154385579 - L2 LINE L2 -6 3307 3149 1859 125 77 0 chrX 22589514 22589786 -154384354 - AluSx SINE Alu -19 293 1 22 35 0 0 chrX 22589813 22589842 -154384298 + AT_rich Low_complexity Low_complexity 1 29 0 382 141 0 42 chrX 22590683 22590754 -154383386 - U6 snRNA snRNA -35 72 5 5131 136 40 2 chrX 22590905 22591841 -154382299 + L1MA4A LINE L1 5332 6302 -1 2169 106 0 13 chrX 22591913 22592216 -154381924 - AluSx SINE Alu 0 312 14 24 32 0 0 chrX 22592272 22592303 -154381837 + AT_rich Low_complexity Low_complexity 1 31 0 715 211 163 48 chrX 22592556 22592783 -154381357 - MIR SINE MIR -5 257 5 506 197 182 5 chrX 22594537 22594675 -154379465 + MER5A DNA MER1_type 17 184 -5 356 192 0 0 chrX 22594683 22594756 -154379384 - Charlie5 DNA MER1_type -27 2585 2513 262 108 0 0 chrX 22594788 22594825 -154379315 - Charlie1 DNA MER1_type -872 1889 1853 423 272 0 0 chrX 22594986 22595166 -154378974 + G-rich Low_complexity Low_complexity 1 180 0 186 293 49 61 chrX 22597037 22597119 -154377021 - L2 LINE L2 -239 3033 2953 22 0 0 0 chrX 22600883 22600905 -154373235 + AT_rich Low_complexity Low_complexity 1 22 0 1602 99 0 19 chrX 22601239 22601452 -154372688 + AluSx SINE Alu 1 209 -103 337 133 0 17 chrX 22601452 22601502 -154372638 + Alu SINE Alu 250 300 0 186 167 0 0 chrX 22601504 22601540 -154372600 + (TA)n Simple_repeat Simple_repeat 2 37 0 397 256 0 0 chrX 22601540 22601630 -154372510 - L1MC4 LINE L1 -1339 6703 6614 249 33 0 0 chrX 22601660 22601690 -154372450 + (GA)n Simple_repeat Simple_repeat 2 31 0 271 258 32 0 chrX 22601703 22601765 -154372375 - MIR3 SINE MIR -20 188 125 285 109 65 0 chrX 22604178 22604224 -154369916 - MER112 DNA MER1_type -211 49 1 2106 124 10 0 chrX 22604305 22604612 -154369528 + AluSx SINE Alu 1 310 -2 2253 151 20 0 chrX 22605101 22605459 -154368681 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 22605501 22605523 -154368617 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 7 3 chrX 22605560 22605860 -154368280 + AluSq SINE Alu 1 301 -12 1889 53 4 0 chrX 22606042 22606268 -154367872 + AluSc SINE Alu 83 309 0 689 222 52 0 chrX 22607646 22607799 -154366341 + MER5B DNA MER1_type 18 178 0 836 284 13 4 chrX 22609641 22609873 -154364267 - MIR SINE MIR -2 260 27 329 320 14 14 chrX 22610603 22610825 -154363315 - L1ME LINE L1 -353 5768 5547 286 298 218 0 chrX 22612664 22612788 -154361352 + MIR3 SINE MIR 32 182 -26 276 340 39 39 chrX 22613017 22613223 -154360917 + L2 LINE L2 925 1130 -2184 2327 80 7 3 chrX 22613341 22613640 -154360500 - AluSc SINE Alu -9 300 1 584 291 76 47 chrX 22613706 22614103 -154360037 + L2 LINE L2 2625 3024 -248 3656 58 0 0 chrX 22614481 22614943 -154359197 - L1PA7 LINE L1 -1 6153 5692 2297 72 23 7 chrX 22616931 22617236 -154356904 - AluY SINE Alu -1 310 1 208 53 53 0 chrX 22617651 22617689 -154356451 + (TTGTG)n Simple_repeat Simple_repeat 5 44 0 186 226 0 57 chrX 22618694 22618747 -154355393 + L2 LINE L2 3223 3272 0 312 276 35 0 chrX 22619056 22619143 -154354997 + L1MC4 LINE L1 6614 6703 -1339 1654 204 119 91 chrX 22619267 22619992 -154354148 - LTR1B LTR ERV1 -81 745 1 198 191 0 0 chrX 22619992 22620034 -154354106 + (TAG)n Simple_repeat Simple_repeat 3 44 0 1364 81 14 18 chrX 22620102 22620325 -154353815 - LTR7 LTR ERV1 -2 448 227 1880 45 34 0 chrX 22670346 22670640 -154303500 + L1PA2 LINE L1 5879 6181 0 22 0 0 0 chrX 22672132 22672154 -154301986 + AT_rich Low_complexity Low_complexity 1 22 0 2292 101 0 7 chrX 22672711 22673008 -154301132 + AluSg SINE Alu 1 295 -15 201 196 59 20 chrX 22673601 22673703 -154300437 + (TA)n Simple_repeat Simple_repeat 2 107 0 641 331 54 48 chrX 22673789 22673942 -154300198 - L2 LINE L2 -1 3312 3161 2136 96 3 14 chrX 22673942 22674235 -154299905 + AluSq SINE Alu 1 290 -23 641 331 54 48 chrX 22674235 22674613 -154299527 - L2 LINE L2 -152 3161 2776 475 255 100 106 chrX 22674620 22675169 -154298971 + HAL1 LINE L1 1 546 -1961 588 291 101 4 chrX 22676265 22676512 -154297628 + MER102b DNA MER1_type 55 325 -16 189 316 0 18 chrX 22676898 22676955 -154297185 - L2 LINE L2 -17 3255 3200 1972 139 105 18 chrX 22677080 22677526 -154296614 - MER31A LTR ERV1 0 485 1 202 243 162 14 chrX 22677870 22677944 -154296196 + L2 LINE L2 3224 3308 -5 314 294 45 45 chrX 22678478 22678699 -154295441 + MLT1J LTR MaLR 287 507 -4 2235 128 0 0 chrX 22680060 22680366 -154293774 - AluSx SINE Alu -6 306 1 197 276 166 21 chrX 22680896 22681041 -154293099 - MIR SINE MIR -72 190 25 348 359 7 35 chrX 22681717 22681862 -154292278 - MIR3 SINE MIR -33 175 35 342 0 0 0 chrX 22682566 22682604 -154291536 + (TC)n Simple_repeat Simple_repeat 2 39 0 237 274 83 36 chrX 22683095 22683179 -154290961 - MIR SINE MIR -6 256 169 2075 125 0 28 chrX 22683212 22683533 -154290607 + AluSx SINE Alu 1 312 0 908 195 16 0 chrX 22683630 22683815 -154290325 + L1PB4 LINE L1 5967 6154 -2 26 0 0 0 chrX 22684164 22684190 -154289950 + AT_rich Low_complexity Low_complexity 1 26 0 6414 77 4 0 chrX 22684279 22685564 -154288576 - L1PA8A LINE L1 -27 6104 4815 1918 105 3 7 chrX 22685563 22685859 -154288281 + L1PA8A LINE L1 4522 4816 -1330 * 1613 187 0 43 chrX 22686489 22686815 -154287325 + AluJb SINE Alu 1 312 0 258 219 0 0 chrX 22687073 22687137 -154287003 + (TA)n Simple_repeat Simple_repeat 2 65 0 261 0 0 0 chrX 22687138 22687167 -154286973 + (GA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chrX 22687968 22688001 -154286139 + AT_rich Low_complexity Low_complexity 1 33 0 2185 108 3 3 chrX 22688317 22688612 -154285528 + AluSx SINE Alu 3 297 -15 689 209 0 0 chrX 22688632 22688771 -154285369 + FLAM_C SINE Alu 1 139 0 1710 143 0 21 chrX 22689202 22689482 -154284658 + MER1B DNA MER1_type 66 339 0 28 0 0 0 chrX 22690397 22690425 -154283715 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 22691134 22691170 -154282970 + AT_rich Low_complexity Low_complexity 1 36 0 244 256 22 22 chrX 22691906 22691996 -154282144 - L2 LINE L2 -790 2524 2435 1227 160 4 16 chrX 22692022 22692272 -154281868 + L1MA7 LINE L1 6044 6290 -1 435 302 83 6 chrX 22692461 22692630 -154281510 - L2 LINE L2 -963 2351 2170 40 0 0 0 chrX 22692756 22692796 -154281344 + AT_rich Low_complexity Low_complexity 1 40 0 187 330 52 31 chrX 22693408 22693505 -154280635 - L2 LINE L2 0 3272 3174 650 317 84 42 chrX 22693675 22694173 -154279967 - L2 LINE L2 -611 2703 2185 27 49 0 0 chrX 22694239 22694280 -154279860 + AT_rich Low_complexity Low_complexity 1 41 0 895 209 29 149 chrX 22694729 22695310 -154278830 - L1MCb LINE L1 -4905 1140 819 323 299 102 22 chrX 22695366 22695503 -154278637 - L1MCb LINE L1 -5343 702 555 209 83 33 33 chrX 22695610 22695670 -154278470 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1887 141 133 11 chrX 22695731 22696099 -154278041 + MSTA LTR MaLR 1 413 -15 350 248 102 25 chrX 22696336 22696493 -154277647 - L1MCb LINE L1 -5817 228 60 310 227 174 38 chrX 22696607 22696739 -154277401 - L1ME4a LINE L1 -4 6117 5968 2444 92 0 0 chrX 22697601 22697904 -154276236 - AluSc SINE Alu -6 303 1 468 51 0 0 chrX 22698950 22699009 -154275131 + (TG)n Simple_repeat Simple_repeat 2 60 0 268 324 186 20 chrX 22700985 22701189 -154272951 - L3b LINE CR1 -73 1510 1273 180 0 0 0 chrX 22701199 22701219 -154272921 + (A)n Simple_repeat Simple_repeat 1 20 0 2074 112 24 3 chrX 22701489 22701785 -154272355 + AluSx SINE Alu 1 302 -10 390 136 0 0 chrX 22701786 22701852 -154272288 + L1MB8 LINE L1 6108 6173 -5 2440 72 3 0 chrX 22701908 22702212 -154271928 + AluY SINE Alu 1 305 -6 456 324 100 12 chrX 22702599 22702769 -154271371 - MIR3 SINE MIR -5 203 19 245 288 8 80 chrX 22702840 22702965 -154271175 - MIR SINE MIR -40 222 107 890 119 0 73 chrX 22703178 22703329 -154270811 - FLAM_C SINE Alu -3 140 1 234 303 23 15 chrX 22703813 22703945 -154270195 - L1ME3 LINE L1 0 6162 6030 543 24 12 24 chrX 22703956 22704039 -154270101 + (CA)n Simple_repeat Simple_repeat 2 83 0 238 236 173 0 chrX 22704057 22704167 -154269973 + L1MC4 LINE L1 7914 8042 0 2432 248 30 33 chrX 22704175 22705315 -154268825 - L1ME3A LINE L1 -115 6055 4914 507 247 174 7 chrX 22705336 22705623 -154268517 - L1ME3A LINE L1 -2383 3763 3429 585 281 62 62 chrX 22705689 22706027 -154268113 - MER102b DNA MER1_type 0 341 4 186 43 0 0 chrX 22706396 22706419 -154267721 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chrX 22706951 22706982 -154267158 + AT_rich Low_complexity Low_complexity 1 31 0 2174 113 0 0 chrX 22706982 22707315 -154266825 + AluSx SINE Alu 1 333 0 1838 125 93 0 chrX 22707920 22708200 -154265940 - AluSx SINE Alu -1 311 6 1758 137 13 51 chrX 22710136 22710449 -154263691 + AluSx SINE Alu 1 301 -11 557 237 199 26 chrX 22710490 22710646 -154263494 - MER5A DNA MER1_type 0 189 7 408 55 0 0 chrX 22712322 22712377 -154261763 + (TG)n Simple_repeat Simple_repeat 2 56 0 547 202 0 17 chrX 22712467 22712586 -154261554 + FLAM_C SINE Alu 1 117 -26 462 36 0 0 chrX 22712589 22712645 -154261495 + (GAA)n Simple_repeat Simple_repeat 2 57 0 2441 132 0 0 chrX 22712927 22713292 -154260848 + MER47A DNA MER2_type 2 366 0 669 375 105 5 chrX 22715638 22716049 -154258091 + L3 LINE CR1 186 637 -940 558 304 84 22 chrX 22716205 22716432 -154257708 + L3 LINE CR1 1334 1574 -3 25 0 0 0 chrX 22716568 22716593 -154257547 + AT_rich Low_complexity Low_complexity 1 25 0 873 267 37 17 chrX 22716594 22716894 -154257246 - L1ME1 LINE L1 -5 6161 5856 260 140 18 18 chrX 22717156 22717213 -154256927 - MLT1H LTR MaLR 0 549 493 610 204 142 6 chrX 22717214 22717376 -154256764 - MER58C DNA MER1_type -2 213 30 283 275 85 59 chrX 22717409 22717645 -154256495 - MLT1H LTR MaLR -59 490 249 502 157 41 54 chrX 22717684 22717831 -154256309 - MLT1H LTR MaLR -391 158 14 541 198 10 109 chrX 22719109 22719178 -154254962 + MER112 DNA MER1_type 82 156 -104 894 130 19 25 chrX 22719178 22719340 -154254800 - L1PA16 LINE L1 0 6166 6006 541 198 10 109 chrX 22719340 22719462 -154254678 + MER112 DNA MER1_type 156 254 -6 2432 224 85 8 chrX 22719844 22719871 -154254269 - L1ME3A LINE L1 -8 6162 6139 1646 105 39 7 chrX 22719871 22720156 -154253984 + L1MA8 LINE L1 5997 6290 -1 2432 224 85 8 chrX 22720156 22720789 -154253351 - L1ME3A LINE L1 -31 6139 5451 2208 108 0 7 chrX 22720844 22721150 -154252990 + AluSx SINE Alu 1 304 -8 387 0 0 0 chrX 22722004 22722047 -154252093 + (CA)n Simple_repeat Simple_repeat 2 44 0 253 230 10 100 chrX 22723301 22723401 -154250739 - MIR SINE MIR -111 151 61 534 331 120 36 chrX 22725865 22726080 -154248060 + L2 LINE L2 2235 2431 -883 758 210 72 6 chrX 22726080 22726247 -154247893 + MER5B DNA MER1_type 1 178 0 534 331 120 36 chrX 22726247 22726608 -154247532 + L2 LINE L2 2431 2859 -455 1023 269 97 39 chrX 22726901 22727387 -154246753 - LTR33 LTR ERVL -7 514 1 195 351 64 11 chrX 22727640 22727734 -154246406 + MIR SINE MIR 2 100 -162 183 80 0 0 chrX 22727826 22727851 -154246289 + (TAA)n Simple_repeat Simple_repeat 2 26 0 643 188 8 16 chrX 22729009 22729137 -154245003 + FLAM_A SINE Alu 1 127 -6 599 181 0 17 chrX 22729623 22729739 -154244401 - MER5A DNA MER1_type -75 114 1 24 32 0 0 chrX 22729873 22729904 -154244236 + AT_rich Low_complexity Low_complexity 1 31 0 299 25 25 0 chrX 22730062 22730102 -154244038 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 25 75 0 0 chrX 22730185 22730238 -154243902 + GC_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chrX 22730267 22730288 -154243852 + GC_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chrX 22731015 22731039 -154243101 + (T)n Simple_repeat Simple_repeat 1 24 0 441 221 21 0 chrX 22737328 22737423 -154236717 - MER5A DNA MER1_type -83 106 10 1163 136 5 21 chrX 22737698 22737889 -154236251 + MER5A DNA MER1_type 2 189 0 2534 196 60 29 chrX 22738359 22739013 -154235127 - L1ME2 LINE L1 -14 6150 5477 856 168 0 0 chrX 22739709 22739834 -154234306 - FLAM_C SINE Alu -18 125 1 2400 99 0 0 chrX 22741077 22741381 -154232759 - AluSc SINE Alu -5 304 1 205 216 39 0 chrX 22741556 22741607 -154232533 - MER5C DNA MER1_type -200 124 72 295 350 113 5 chrX 22742133 22742327 -154231813 + MIR SINE MIR 48 262 0 1806 105 12 23 chrX 22742670 22742927 -154231213 + AluSx SINE Alu 35 288 -24 1304 202 139 52 chrX 22743077 22743538 -154230602 - LTR33A LTR ERVL 0 523 23 2632 105 29 2 chrX 22743859 22744269 -154229871 - Tigger1 DNA MER2_type 0 2418 1998 * 10390 132 22 16 chrX 22744261 22744560 -154229580 - Tigger1 DNA MER2_type -570 1848 1552 2369 90 0 3 chrX 22744560 22744861 -154229279 - AluSg SINE Alu -10 300 1 10390 132 22 16 chrX 22744861 22745237 -154228903 - Tigger1 DNA MER2_type -866 1552 1180 2394 87 0 0 chrX 22745237 22745535 -154228605 - AluSg SINE Alu -12 298 1 10390 132 22 16 chrX 22745535 22746695 -154227445 - Tigger1 DNA MER2_type -1238 1180 1 248 196 0 0 chrX 22746741 22746792 -154227348 + L2 LINE L2 3262 3312 -1 367 208 88 16 chrX 22747332 22747457 -154226683 - L1ME4a LINE L1 -27 6094 5961 456 303 134 16 chrX 22748282 22748589 -154225551 - L1ME4a LINE L1 -381 5740 5398 315 0 0 0 chrX 22749442 22749477 -154224663 + (CA)n Simple_repeat Simple_repeat 2 36 0 2076 144 3 6 chrX 22749890 22750203 -154223937 - AluJb SINE Alu 0 312 1 283 264 233 6 chrX 22750775 22750938 -154223202 - MIR SINE MIR -60 202 3 345 288 28 73 chrX 22751097 22751274 -154222866 - MIR SINE MIR -8 254 86 210 273 131 17 chrX 22751326 22751455 -154222685 + MIR3 SINE MIR 102 250 -12 197 343 14 14 chrX 22752742 22752815 -154221325 - MIR SINE MIR -61 147 75 986 175 22 79 chrX 22753804 22754032 -154220108 + MER58A DNA MER1_type 10 224 0 268 386 7 39 chrX 22755171 22755324 -154218816 - L2 LINE L2 -4 3268 3121 221 207 0 17 chrX 22755624 22755682 -154218458 + GA-rich Low_complexity Low_complexity 4 60 0 1889 70 89 0 chrX 22756031 22756288 -154217852 + AluSc SINE Alu 12 291 -18 272 283 174 0 chrX 22756455 22756547 -154217593 - MIR SINE MIR -71 137 30 2002 126 0 27 chrX 22757657 22757951 -154216189 - AluJb SINE Alu -26 286 1 247 247 90 0 chrX 22757954 22758043 -154216097 - L1M4 LINE L1 -1332 4814 4718 1775 169 7 17 chrX 22758044 22758346 -154215794 + AluJo SINE Alu 1 299 -13 2127 121 7 3 chrX 22759056 22759361 -154214779 - AluSq SINE Alu -7 306 1 22 80 0 0 chrX 22759809 22759859 -154214281 + AT_rich Low_complexity Low_complexity 1 50 0 279 0 0 0 chrX 22760026 22760057 -154214083 + (TG)n Simple_repeat Simple_repeat 1 31 0 251 267 0 27 chrX 22760384 22760459 -154213681 - MER102a DNA MER1_type -17 313 241 2148 118 0 7 chrX 22760947 22761252 -154212888 + AluSx SINE Alu 1 303 -9 759 172 0 15 chrX 22762846 22762980 -154211160 + FLAM_A SINE Alu 1 132 -1 704 257 8 25 chrX 22763042 22763283 -154210857 - AluSc SINE Alu -11 298 62 1270 118 5 68 chrX 22764099 22764319 -154209821 + AluJo SINE Alu 86 291 -21 216 296 156 29 chrX 22765464 22765611 -154208529 + MIR SINE MIR 15 177 -56 21 0 0 0 chrX 22765858 22765879 -154208261 + AT_rich Low_complexity Low_complexity 1 21 0 234 291 0 0 chrX 22765903 22765958 -154208182 + L3 LINE CR1 1517 1571 -6 2048 141 36 58 chrX 22767040 22767282 -154206858 + MLT1C LTR MaLR 1 230 -237 2241 98 3 0 chrX 22767282 22767577 -154206563 + AluSx SINE Alu 1 296 -16 2048 141 36 58 chrX 22767577 22767782 -154206358 + MLT1C LTR MaLR 230 438 -29 1424 130 79 29 chrX 22767782 22768097 -154206043 + L1MB7 LINE L1 5838 6168 -16 2320 87 0 7 chrX 22768105 22768404 -154205736 + AluSq SINE Alu 3 299 -14 816 229 69 0 chrX 22768417 22768592 -154205548 + L2 LINE L2 2506 2692 -622 468 168 227 0 chrX 22769023 22769142 -154204998 - MER3 DNA MER1_type -63 146 1 668 191 56 0 chrX 22769199 22769325 -154204815 + FLAM_C SINE Alu 1 133 -10 616 288 113 28 chrX 22770484 22770838 -154203302 - L2 LINE L2 -1220 2094 1711 1876 162 15 6 chrX 22770846 22771185 -154202955 - MER7A DNA MER2_type 0 346 7 219 114 0 0 chrX 22771188 22771223 -154202917 + (TG)n Simple_repeat Simple_repeat 2 36 0 562 160 21 0 chrX 22771228 22771322 -154202818 - MER8 DNA MER2_type -3 236 141 661 339 73 22 chrX 22771778 22772273 -154201867 - L2 LINE L2 -2222 1092 573 335 255 29 59 chrX 22772353 22772455 -154201685 + L2 LINE L2 3174 3272 0 2520 68 0 0 chrX 22775813 22776123 -154198017 + AluY SINE Alu 1 310 -1 2078 179 3 3 chrX 22776240 22776620 -154197520 + MER47B DNA MER2_type 1 380 -38 223 258 328 0 chrX 22778288 22778416 -154195724 + MIR3 SINE MIR 36 205 -3 333 47 0 0 chrX 22778844 22778887 -154195253 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 0 39 0 chrX 22778887 22778913 -154195227 + (TA)n Simple_repeat Simple_repeat 1 27 0 2620 92 63 17 chrX 22783038 22783148 -154190992 - L1PA14 LINE L1 -4 6157 6054 820 70 94 8 chrX 22783148 22783276 -154190864 - MER85 DNA T2_type 0 139 1 2620 92 63 17 chrX 22783276 22783579 -154190561 - L1PA14 LINE L1 -107 6054 5725 22 0 0 0 chrX 22783765 22783787 -154190353 + AT_rich Low_complexity Low_complexity 1 22 0 248 266 44 71 chrX 22785935 22786048 -154188092 - L2 LINE L2 -1 3271 3162 2087 105 3 0 chrX 22786132 22786437 -154187703 + AluSx SINE Alu 1 306 0 2213 95 13 3 chrX 22787744 22788048 -154186092 - AluSc SINE Alu -2 307 1 431 272 6 0 chrX 22788739 22788897 -154185243 + CT-rich Low_complexity Low_complexity 2 160 0 351 204 111 0 chrX 22788897 22789005 -154185135 - L1ME1 LINE L1 -119 6047 5928 1371 261 67 48 chrX 22790127 22790411 -154183729 - L1MC4 LINE L1 -190 7852 7575 2113 107 4 0 chrX 22790411 22790692 -154183448 - AluSx SINE Alu -30 282 1 1371 261 67 48 chrX 22790692 22791165 -154182975 - L1MC4 LINE L1 -467 7575 7080 285 303 83 0 chrX 22791856 22791965 -154182175 + MIR3 SINE MIR 87 204 -4 2359 122 5 22 chrX 22792821 22793191 -154180949 - THE1B LTR MaLR 0 364 1 240 35 0 0 chrX 22793379 22793408 -154180732 + (CA)n Simple_repeat Simple_repeat 2 30 0 458 129 0 21 chrX 22793736 22793829 -154180311 + L1MD3 LINE L1 7809 7899 -96 400 184 28 55 chrX 22793829 22793938 -154180202 - MER20 DNA MER1_type 0 219 114 2566 96 63 19 chrX 22794313 22794424 -154179716 - L1PA14 LINE L1 -4 6157 6052 795 78 94 8 chrX 22794424 22794552 -154179588 - MER85 DNA T2_type 0 139 1 2566 96 63 19 chrX 22794552 22794855 -154179285 - L1PA14 LINE L1 -109 6052 5725 22 0 0 0 chrX 22795041 22795063 -154179077 + AT_rich Low_complexity Low_complexity 1 22 0 248 266 44 71 chrX 22797213 22797326 -154176814 - L2 LINE L2 -1 3271 3162 2087 105 3 0 chrX 22797410 22797715 -154176425 + AluSx SINE Alu 1 306 0 2343 100 0 0 chrX 22799022 22799332 -154174808 - AluSx SINE Alu -2 310 1 314 290 72 36 chrX 22799332 22799470 -154174670 - L1ME1 LINE L1 -387 5734 5592 1810 94 31 8 chrX 22800121 22800401 -154173739 - AluSx SINE Alu 0 307 22 1552 155 46 3 chrX 22800946 22801114 -154173026 - AluJb SINE Alu -16 296 110 498 33 0 0 chrX 22801114 22801174 -154172966 + (TG)n Simple_repeat Simple_repeat 2 61 0 1552 155 46 3 chrX 22801174 22801289 -154172851 - AluJb SINE Alu -202 110 1 191 163 47 0 chrX 22801820 22801863 -154172277 - MIR SINE MIR -56 206 162 253 253 93 0 chrX 22803199 22803274 -154170866 - MIR3 SINE MIR -26 182 101 635 201 0 101 chrX 22803541 22803700 -154170440 + Tigger3(Golem) DNA MER2_type 1 143 -2886 2954 137 29 63 chrX 22803754 22803950 -154170190 - L1MA4 LINE L1 -1 6299 6098 874 227 0 0 chrX 22803950 22804113 -154170027 + FAM SINE Alu 1 163 -12 2954 137 29 63 chrX 22804113 22804564 -154169576 - L1MA4 LINE L1 -202 6098 5674 366 127 0 14 chrX 22804879 22804950 -154169190 - L1MA4 LINE L1 -128 6172 6103 374 164 0 0 chrX 22804950 22805011 -154169129 + FRAM/FAM SINE Alu 1 61 -105 680 270 167 14 chrX 22805058 22805280 -154168860 + MIR SINE MIR 7 262 0 336 154 48 29 chrX 22805588 22805692 -154168448 + GA-rich Low_complexity Low_complexity 5 110 0 21 43 0 0 chrX 22805696 22805719 -154168421 + GC_rich Low_complexity Low_complexity 1 23 0 261 271 0 0 chrX 22806164 22806223 -154167917 - MER20 DNA MER1_type -160 59 1 767 244 32 65 chrX 22806773 22807019 -154167121 - MER8 DNA MER2_type -1 238 1 1018 215 14 22 chrX 22808276 22808499 -154165641 - L3b LINE CR1 -136 1447 1227 639 0 0 0 chrX 22808516 22808587 -154165553 + (TC)n Simple_repeat Simple_repeat 2 72 0 357 236 38 0 chrX 22808616 22808722 -154165418 + MER103 DNA DNA 49 158 -8 780 260 134 4 chrX 22809071 22809302 -154164838 - MIR SINE MIR 0 262 2 2985 101 5 5 chrX 22809639 22810077 -154164063 - L1PA13 LINE L1 -6 6157 5720 309 282 47 89 chrX 22810307 22811144 -154162996 + L1MEd LINE L1 579 1401 -4866 6892 11 0 0 chrX 22811180 22811960 -154162180 - L1PA3 LINE L1 -3 6152 5373 2151 112 3 0 chrX 22812096 22812391 -154161749 + AluSx SINE Alu 1 296 -16 291 256 151 17 chrX 22812430 22812602 -154161538 + L1MEd LINE L1 1621 1815 -4581 21 0 0 0 chrX 22812604 22812625 -154161515 + AT_rich Low_complexity Low_complexity 1 21 0 433 237 145 40 chrX 22812823 22812975 -154161165 + MIR3 SINE MIR 38 205 -3 343 141 13 115 chrX 22816091 22816169 -154157971 + L2 LINE L2 3244 3313 0 401 252 47 39 chrX 22816412 22816539 -154157601 - MIR SINE MIR -72 190 63 627 128 0 0 chrX 22816673 22816767 -154157373 + LTR19B LTR ERV1 487 580 0 280 305 176 8 chrX 22816837 22816968 -154157172 + MER5A DNA MER1_type 37 189 0 344 301 135 6 chrX 22817232 22817395 -154156745 - MIR SINE MIR -71 191 8 219 36 0 0 chrX 22818452 22818480 -154155660 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 23 54 0 0 chrX 22819961 22819998 -154154142 + AT_rich Low_complexity Low_complexity 1 37 0 210 37 0 0 chrX 22823333 22823360 -154150780 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 25 51 0 0 chrX 22826000 22826039 -154148101 + AT_rich Low_complexity Low_complexity 1 39 0 403 321 101 24 chrX 22828922 22829155 -154144985 - MIR SINE MIR -2 260 10 221 77 103 0 chrX 22830101 22830140 -154144000 + L2 LINE L2 3271 3313 0 2160 132 13 3 chrX 22832857 22833175 -154140965 - THE1B LTR MaLR -43 321 1 198 0 0 0 chrX 22833930 22833952 -154140188 + (T)n Simple_repeat Simple_repeat 1 22 0 353 394 101 24 chrX 22834079 22834376 -154139764 - L2 LINE L2 -8 3264 2945 420 242 226 16 chrX 22835182 22835372 -154138768 - MIR SINE MIR -18 244 15 325 260 60 0 chrX 22835628 22835728 -154138412 - MER103 DNA DNA -52 114 9 211 296 25 37 chrX 22837106 22837187 -154136953 + L2 LINE L2 3143 3222 -50 355 198 0 0 chrX 22837633 22837714 -154136426 - L1MB8 LINE L1 0 6178 6098 2172 150 20 43 chrX 22837738 22838178 -154135962 - L1MB8 LINE L1 -66 6112 5683 1927 131 33 36 chrX 22838208 22838513 -154135627 + AluJo SINE Alu 1 304 -8 260 212 30 30 chrX 22839619 22839685 -154134455 - MIR SINE MIR 0 262 197 1709 153 0 50 chrX 22840308 22840608 -154133532 - AluJb SINE Alu -21 291 7 2356 74 10 7 chrX 22841718 22842028 -154132112 + AluY SINE Alu 1 311 0 1876 156 0 20 chrX 22843472 22843773 -154130367 + AluJo SINE Alu 1 295 -17 2030 93 68 4 chrX 22843850 22844128 -154130012 + AluSq SINE Alu 3 298 -15 282 266 38 134 chrX 22844243 22844563 -154129577 + L1ME3A LINE L1 933 1221 -4898 829 260 120 38 chrX 22846085 22846685 -154127455 + L1ME3A LINE L1 2437 3085 -3044 643 318 119 28 chrX 22846682 22847478 -154126662 + L1ME3A LINE L1 4448 5316 -813 * 654 296 63 57 chrX 22847552 22848062 -154126078 + L1ME3A LINE L1 5436 5948 -205 279 157 0 0 chrX 22848733 22848784 -154125356 + T-rich Low_complexity Low_complexity 1 51 0 2250 101 0 0 chrX 22850353 22850651 -154123489 + AluSg SINE Alu 1 298 -12 1800 127 82 28 chrX 22852799 22853154 -154120986 - THE1C LTR MaLR 0 375 2 183 204 20 20 chrX 22853481 22853530 -154120610 - L2 LINE L2 -98 3215 3167 23 33 0 0 chrX 22853655 22853685 -154120455 + AT_rich Low_complexity Low_complexity 1 30 0 1107 243 131 33 chrX 22853928 22854418 -154119722 - L1MC4 LINE L1 -88 7954 7417 23 0 0 0 chrX 22854555 22854578 -154119562 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 22855077 22855112 -154119028 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2108 107 7 10 chrX 22855114 22855405 -154118735 - AluSx SINE Alu -22 290 1 203 241 93 0 chrX 22855448 22855502 -154118638 + L2 LINE L2 3186 3244 -69 4428 100 10 22 chrX 22856448 22856805 -154117335 - L1PB1 LINE L1 0 6151 5804 306 0 0 0 chrX 22856805 22856839 -154117301 + (TG)n Simple_repeat Simple_repeat 2 35 0 4428 100 10 22 chrX 22856839 22857154 -154116986 - L1PB1 LINE L1 -347 5804 5487 1766 130 81 68 chrX 22857441 22857625 -154116515 + THE1C LTR MaLR 1 181 -194 576 0 0 0 chrX 22857625 22857689 -154116451 + (TC)n Simple_repeat Simple_repeat 1 64 0 1766 130 81 68 chrX 22857689 22857874 -154116266 + THE1C LTR MaLR 181 375 0 267 171 0 12 chrX 22857953 22858009 -154116131 - MLT1H LTR MaLR 0 549 507 955 285 60 87 chrX 22858286 22858767 -154115373 + L2 LINE L2 2846 3313 0 2336 98 0 3 chrX 22858997 22859302 -154114838 + AluY SINE Alu 3 306 -5 185 94 31 0 chrX 22860030 22860062 -154114078 + GA-rich Low_complexity Low_complexity 1 33 0 828 142 0 22 chrX 22861274 22861408 -154112732 - FLAM_C SINE Alu -2 131 1 882 112 7 13 chrX 22861410 22861562 -154112578 - L1MA4A LINE L1 -5 6298 6148 2513 77 0 0 chrX 22861593 22861892 -154112248 + AluSg SINE Alu 1 299 -11 284 273 80 9 chrX 22862518 22862628 -154111512 - MIR SINE MIR -67 141 38 231 307 132 9 chrX 22863585 22863699 -154110441 - L2 LINE L2 -20 3252 3125 369 252 79 0 chrX 22864918 22865057 -154109083 + MER112 DNA MER1_type 70 219 -41 197 343 14 14 chrX 22865537 22865610 -154108530 - MIR SINE MIR -61 147 75 986 175 22 79 chrX 22866599 22866827 -154107313 + MER58A DNA MER1_type 10 224 0 268 386 7 39 chrX 22867966 22868119 -154106021 - L2 LINE L2 -4 3268 3121 221 207 0 17 chrX 22868419 22868477 -154105663 + GA-rich Low_complexity Low_complexity 4 60 0 219 88 0 0 chrX 22869476 22869510 -154104630 + (T)n Simple_repeat Simple_repeat 1 34 0 1018 209 76 4 chrX 22870156 22870381 -154103759 - MIR SINE MIR -5 257 17 278 212 0 24 chrX 22873852 22873937 -154100203 + (TGG)n Simple_repeat Simple_repeat 3 85 0 279 54 0 0 chrX 22874850 22874887 -154099253 + (CA)n Simple_repeat Simple_repeat 2 38 0 222 118 0 0 chrX 22875413 22875447 -154098693 + (ATTG)n Simple_repeat Simple_repeat 3 36 0 23 0 0 0 chrX 22876278 22876301 -154097839 + AT_rich Low_complexity Low_complexity 1 23 0 685 253 20 81 chrX 22877278 22877720 -154096420 - L1MC4a LINE L1 -1797 6011 5597 2635 187 42 40 chrX 22879159 22879866 -154094274 - L1MC4 LINE L1 -2 8040 7332 824 270 45 65 chrX 22881548 22881966 -154092174 + LTR16A LTR ERVL 48 450 0 21 0 0 0 chrX 22882117 22882138 -154092002 + AT_rich Low_complexity Low_complexity 1 21 0 1011 120 27 6 chrX 22882138 22882321 -154091819 - L1MA4A LINE L1 -13 6290 6104 560 158 8 75 chrX 22882347 22882467 -154091673 - FLAM_A SINE Alu -23 119 8 2977 272 34 22 chrX 22882644 22883818 -154090322 + L2 LINE L2 2102 3288 -25 520 343 136 27 chrX 22883958 22884296 -154089844 + L3b LINE CR1 1113 1487 -96 2543 80 0 0 chrX 22884391 22884703 -154089437 - AluSx SINE Alu 0 312 1 213 330 122 78 chrX 22885115 22885345 -154088795 - L2 LINE L2 -4 3268 3029 357 211 0 12 chrX 22886139 22886240 -154087900 - MLT1I LTR MaLR -5 428 324 555 199 55 20 chrX 22886336 22886482 -154087658 - MLT1J2 LTR MaLR -291 159 9 274 330 121 49 chrX 22886864 22887088 -154087052 - L2 LINE L2 -431 2883 2644 386 223 49 18 chrX 22887244 22887381 -154086759 - L1ME4a LINE L1 -14 6097 1197 2762 140 34 2 chrX 22887482 22887925 -154086215 - MSTB2 LTR MaLR 0 457 1 5223 183 94 95 chrX 22887930 22889428 -154084712 - MSTB2-int LTR MaLR -5 1646 149 1724 134 120 23 chrX 22889428 22889770 -154084370 + THE1C LTR MaLR 1 375 0 5223 183 94 95 chrX 22889770 22889919 -154084221 - MSTB2-int LTR MaLR -1502 149 1 2097 150 69 27 chrX 22889919 22890325 -154083815 - MSTC LTR MaLR 0 428 6 262 358 0 0 chrX 22890390 22890457 -154083683 + MIR SINE MIR 2 68 -194 791 223 4 101 chrX 22890461 22890522 -154083618 - MER58A DNA MER1_type -2196 224 159 1900 174 30 67 chrX 22890522 22890952 -154083188 - MLT2D LTR ERVL 0 414 1 791 223 4 101 chrX 22890952 22891060 -154083080 - MER58A DNA MER1_type -2261 159 84 1920 142 0 0 chrX 22891060 22891342 -154082798 - AluJb SINE Alu -12 300 19 791 223 4 101 chrX 22891342 22891418 -154082722 - MER58A DNA MER1_type -2336 84 2 489 261 61 67 chrX 22891426 22891549 -154082591 + MIR SINE MIR 69 192 -70 1650 175 35 0 chrX 22891549 22891835 -154082305 + AluJb SINE Alu 2 297 -15 489 261 61 67 chrX 22891835 22891891 -154082249 + MIR SINE MIR 192 247 -15 708 183 26 7 chrX 22891936 22892089 -154082051 - L1MA10 LINE L1 -3 6331 6176 335 294 56 17 chrX 22892190 22892370 -154081770 - L1ME LINE L1 -376 5745 5559 423 307 55 33 chrX 22893017 22893277 -154080863 - L1ME LINE L1 -750 5396 5204 213 39 0 0 chrX 22893487 22893513 -154080627 + (TC)n Simple_repeat Simple_repeat 1 26 0 727 245 34 27 chrX 22893602 22893880 -154080260 + LTR67 LTR ERVL 154 478 -79 3762 158 80 9 chrX 22893880 22894564 -154079576 - MER44D DNA MER2_type 0 605 1 727 245 34 27 chrX 22894564 22894645 -154079495 + LTR67 LTR ERVL 478 557 0 1675 164 23 17 chrX 22894753 22895052 -154079088 - AluJb SINE Alu -7 305 5 1984 154 3 3 chrX 22895056 22895362 -154078778 - AluJb SINE Alu -6 306 1 974 294 62 21 chrX 22896634 22897052 -154077088 + LTR16A LTR ERVL 16 450 0 212 255 198 19 chrX 22897389 22897495 -154076645 - L2 LINE L2 -10 3303 3179 273 242 97 40 chrX 22897666 22897790 -154076350 + L1ME LINE L1 5634 5764 -357 1927 198 97 136 chrX 22898185 22899143 -154074997 + LTR28 LTR ERV1 2 1020 0 3364 122 19 12 chrX 22899207 22899774 -154074366 - L1PA16 LINE L1 -141 6025 5455 306 258 0 11 chrX 22899804 22899893 -154074247 + L1ME1 LINE L1 5555 5642 -479 609 195 8 8 chrX 22899901 22900024 -154074116 + MER63 DNA MER1_type 2 750 -86 1797 229 25 25 chrX 22900032 22900454 -154073686 + L1ME1 LINE L1 5648 6072 -94 2267 91 14 0 chrX 22900454 22900750 -154073390 - AluSx SINE Alu -12 300 1 1797 229 25 25 chrX 22900750 22900842 -154073298 + L1ME1 LINE L1 6071 6162 -4 476 250 56 7 chrX 22901199 22901343 -154072797 + LTR16C LTR ERVL 332 482 -9 393 293 88 60 chrX 22901507 22901756 -154072384 - L2 LINE L2 -4 3309 3054 2435 192 88 63 chrX 22901834 22902640 -154071500 + LTR1B LTR ERV1 1 826 0 275 187 21 105 chrX 22902750 22902871 -154071269 + MLT1H LTR MaLR 453 546 -3 863 311 25 43 chrX 22902876 22903269 -154070871 - L2 LINE L2 -256 3057 2654 646 257 182 61 chrX 22903422 22903768 -154070372 - MLT1G1 LTR MaLR 0 595 208 2179 186 92 29 chrX 22904750 22905189 -154068951 - L1ME2 LINE L1 0 6164 5677 1877 154 3 3 chrX 22905189 22905487 -154068653 - AluSx SINE Alu -14 298 1 2179 186 92 29 chrX 22905487 22905633 -154068507 - L1ME2 LINE L1 -487 5677 5542 3159 139 45 37 chrX 22906894 22907010 -154067130 - MER6A DNA MER2_type -260 605 491 2557 51 0 0 chrX 22907010 22907306 -154066834 + AluY SINE Alu 1 296 -15 2024 127 31 0 chrX 22907311 22907602 -154066538 + AluSx SINE Alu 1 300 -12 3159 139 45 37 chrX 22907602 22908076 -154066064 - MER6A DNA MER2_type -377 488 4 706 271 86 31 chrX 22908181 22908473 -154065667 + MLT1I LTR MaLR 19 326 -83 441 198 12 0 chrX 22908473 22908559 -154065581 - MER96 DNA MER1_type? -88 87 1 552 305 107 38 chrX 22909757 22910232 -154063908 + L2 LINE L2 2232 2739 -575 495 236 205 92 chrX 22910560 22911047 -154063093 - MLT1G1 LTR MaLR 0 542 1 254 268 41 62 chrX 22911095 22911192 -154062948 + L2 LINE L2 3168 3262 -10 4086 147 28 6 chrX 22911807 22912454 -154061686 - L1PA16 LINE L1 0 6166 5506 45271 40 1 0 chrX 22912850 22918996 -154055144 + L1PA4 LINE L1 1 6152 -3 290 185 43 98 chrX 22918996 22919088 -154055052 + MLT1I LTR MaLR 323 409 0 1913 87 3 66 chrX 22919610 22919899 -154054241 + AluY SINE Alu 32 302 -9 817 294 0 31 chrX 22920215 22920443 -154053697 - LTR33 LTR ERVL -300 221 1 1494 169 98 14 chrX 22921481 22921837 -154052303 - LTR37A LTR ERV1 0 426 41 203 180 80 20 chrX 22922087 22922137 -154052003 + MER5A DNA MER1_type 41 93 -96 4160 189 61 29 chrX 22922162 22923760 -154050380 + L1MB7 LINE L1 4492 6166 -18 2033 107 3 17 chrX 22923760 22924060 -154050080 - AluSg SINE Alu -14 296 1 4160 189 61 29 chrX 22924060 22924080 -154050060 + L1MB7 LINE L1 6166 6184 0 327 301 145 64 chrX 22924127 22924486 -154049654 + L1M2 LINE L1 855 1242 -5607 195 42 0 0 chrX 22925269 22925293 -154048847 + (GGGTG)n Simple_repeat Simple_repeat 5 28 0 188 375 45 0 chrX 22925733 22925821 -154048319 - MIR3 SINE MIR -116 92 1 244 272 40 48 chrX 22927876 22928001 -154046139 - MLT1J LTR MaLR -7 504 381 402 134 49 61 chrX 22928011 22928093 -154046047 + HsTC2 DNA Tc2 2 82 -1816 1644 210 52 19 chrX 22928124 22928547 -154045593 + HsTC2 DNA Tc2 1286 1898 0 264 231 123 0 chrX 22928590 22928655 -154045485 - MLT1J LTR MaLR -200 311 239 232 275 0 0 chrX 22928656 22928725 -154045415 - L1MC4 LINE L1 -1355 6687 6619 * 241 245 0 82 chrX 22928702 22928800 -154045340 + L1MC4 LINE L1 6614 6703 -1339 * 254 272 0 22 chrX 22928726 22928818 -154045322 - L1MC4 LINE L1 -1339 6703 6614 229 209 0 0 chrX 22928813 22928856 -154045284 + L1MC4 LINE L1 6653 6695 -1347 * 235 339 0 0 chrX 22928856 22928915 -154045225 + (TG)n Simple_repeat Simple_repeat 1 59 0 227 264 111 0 chrX 22928916 22928988 -154045152 + L1MC4 LINE L1 6616 6695 -1347 435 294 0 0 chrX 22928992 22929155 -154044985 + (TATATG)n Simple_repeat Simple_repeat 4 166 0 527 256 18 0 chrX 22929198 22929434 -154044706 + (TATG)n Simple_repeat Simple_repeat 1 240 0 437 296 11 0 chrX 22929434 22929610 -154044530 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 3173 187 117 94 chrX 22929834 22930416 -154043724 - L1MC3 LINE L1 0 7785 7085 259 235 59 35 chrX 22930416 22930501 -154043639 - MLT1J LTR MaLR -446 121 35 3173 187 117 94 chrX 22930501 22930880 -154043260 - L1MC3 LINE L1 -700 7085 6716 5239 140 38 11 chrX 22930902 22931779 -154042361 - L1MA6 LINE L1 0 6300 5401 2200 129 44 12 chrX 22931836 22932246 -154041894 - L1MA6 LINE L1 -1439 4707 4285 433 288 0 0 chrX 22932240 22932372 -154041768 - L1 LINE L1 -3279 2867 2736 * 498 277 39 0 chrX 22932385 22932540 -154041600 + Charlie8 DNA MER1_type 98 258 -2159 2526 69 0 7 chrX 22933458 22933764 -154040376 - AluSq SINE Alu -9 304 1 2925 210 52 165 chrX 22936436 22937897 -154036243 + L2 LINE L2 13 1308 -2006 1343 174 46 0 chrX 22937953 22938172 -154035968 + MER46A DNA MER2_type 1 229 -7 287 235 49 12 chrX 22938178 22938259 -154035881 - MLT1H LTR MaLR -45 504 421 1241 251 33 92 chrX 22938569 22939239 -154034901 + L2 LINE L2 1325 1954 -1360 1061 140 6 17 chrX 22939244 22939422 -154034718 - AluJb SINE Alu 0 312 137 490 269 6 44 chrX 22939422 22939582 -154034558 + L2 LINE L2 1991 2144 -1170 2161 125 3 3 chrX 22939589 22939893 -154034247 - AluSx SINE Alu -8 304 1 2725 166 25 48 chrX 22939907 22940036 -154034104 - L1MA8 LINE L1 -5 6286 6156 3635 37 0 0 chrX 22940036 22940445 -154033695 - L1PA4 LINE L1 0 6155 5747 2725 166 25 48 chrX 22940445 22940874 -154033266 - L1MA8 LINE L1 -135 6156 5741 568 215 73 40 chrX 22940875 22941052 -154033088 + L2 LINE L2 2156 2338 -976 434 187 51 42 chrX 22941059 22941250 -154032890 + L1MA9 LINE L1 6008 6291 0 313 267 0 0 chrX 22941280 22941385 -154032755 + HAL1 LINE L1 2270 2374 -133 236 186 17 0 chrX 22941450 22941509 -154032631 + (CATA)n Simple_repeat Simple_repeat 2 61 0 1186 294 140 13 chrX 22941635 22942165 -154031975 + L2 LINE L2 2370 2966 -348 331 253 21 21 chrX 22942168 22942263 -154031877 - MLT1H LTR MaLR -1 548 454 552 302 0 0 chrX 22942315 22942444 -154031696 + MER58A DNA MER1_type 6 134 0 293 241 13 51 chrX 22942480 22942559 -154031581 - MLT1H LTR MaLR -251 298 223 215 81 54 0 chrX 22942559 22942596 -154031544 + GA-rich Low_complexity Low_complexity 2 40 0 266 220 34 0 chrX 22942703 22942762 -154031378 - MLT1H LTR MaLR -488 61 1 785 287 97 10 chrX 22942777 22943077 -154031063 + L2 LINE L2 2988 3313 0 2379 79 0 3 chrX 22943651 22943943 -154030197 - AluSq SINE Alu -17 296 6 235 365 185 18 chrX 22944907 22945302 -154028838 - L2 LINE L2 0 3272 2812 228 341 45 30 chrX 22946167 22946299 -154027841 - L2 LINE L2 -556 2758 2625 253 214 83 24 chrX 22947854 22947938 -154026202 - Tigger4(Zombi) DNA MER2_type -1754 977 889 279 227 237 0 chrX 22947938 22948035 -154026105 + MIR SINE MIR 128 247 -15 585 301 179 40 chrX 22948386 22948834 -154025306 + L3 LINE CR1 1051 1560 -17 204 241 78 24 chrX 22949160 22949313 -154024827 - MIR3 SINE MIR -56 206 7 2524 64 0 0 chrX 22950619 22950917 -154023223 + AluY SINE Alu 5 302 -9 769 249 0 31 chrX 22950939 22951132 -154023008 + MIR SINE MIR 74 260 -2 503 291 42 140 chrX 22951182 22951567 -154022573 - L2 LINE L2 -5 3267 2921 2157 111 24 0 chrX 22951621 22951918 -154022222 - AluSx SINE Alu -8 304 1 812 151 8 0 chrX 22952682 22952801 -154021339 - FLAM_C SINE Alu -23 120 1 5251 125 83 30 chrX 22952939 22953454 -154020686 + MER4D LTR ERV1 1 580 -323 2307 101 0 3 chrX 22953454 22953760 -154020380 - AluSg SINE Alu -5 305 1 5251 125 83 30 chrX 22953760 22954102 -154020038 + MER4D LTR ERV1 580 903 0 5101 190 26 35 chrX 22954260 22955531 -154018609 - L1MD2 LINE L1 -2 6357 5096 569 320 22 14 chrX 22955585 22955807 -154018333 - MIR SINE MIR -12 250 27 438 309 13 20 chrX 22955961 22956110 -154018030 - MER5A DNA MER1_type -4 185 38 2036 127 23 7 chrX 22956331 22956638 -154017502 + AluSx SINE Alu 1 312 0 213 245 0 0 chrX 22956790 22956839 -154017301 + MIR3 SINE MIR 154 202 -6 297 0 0 0 chrX 22957381 22957414 -154016726 + (CA)n Simple_repeat Simple_repeat 2 34 0 369 301 55 14 chrX 22958144 22958290 -154015850 - MIR SINE MIR -20 242 91 444 276 59 20 chrX 22958398 22958550 -154015590 + MER5A DNA MER1_type 1 158 -31 295 262 139 8 chrX 22958727 22958849 -154015291 + MIR SINE MIR 74 211 -51 1004 251 80 89 chrX 22958867 22959417 -154014723 + MLT1H LTR MaLR 1 545 -4 1786 319 104 41 chrX 22960972 22962697 -154011443 - L2 LINE L2 -1090 2224 391 2530 99 33 28 chrX 22963012 22963374 -154010766 + THE1B LTR MaLR 1 364 0 344 192 27 0 chrX 22963393 22963466 -154010674 + MER116 DNA Mariner 6 80 0 180 0 0 0 chrX 22963782 22963802 -154010338 + (A)n Simple_repeat Simple_repeat 1 20 0 237 65 0 0 chrX 22964430 22964461 -154009679 + (GA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 22964488 22964514 -154009626 + (A)n Simple_repeat Simple_repeat 1 26 0 1357 226 58 58 chrX 22965858 22966304 -154007836 + LTR16A1 LTR ERVL 1 446 -11 336 260 90 0 chrX 22966312 22966412 -154007728 + MIR SINE MIR 84 192 -70 662 254 32 119 chrX 22966686 22967096 -154007044 + L2 LINE L2 2216 2589 -725 1404 128 182 8 chrX 22967099 22967357 -154006783 - MSTD LTR MaLR -93 303 1 629 193 80 179 chrX 22967357 22967709 -154006431 - L1MC4 LINE L1 -202 7840 7524 202 233 0 0 chrX 22968004 22968047 -154006093 - L2 LINE L2 -1 3312 3270 * 212 231 91 91 chrX 22968033 22968154 -154005986 + MIR SINE MIR 72 192 -70 317 245 141 78 chrX 22968743 22968869 -154005271 + MIR SINE MIR 32 176 -86 694 212 118 18 chrX 22968869 22969039 -154005101 + MER5A DNA MER1_type 2 188 -1 317 245 141 78 chrX 22969039 22969104 -154005036 + MIR SINE MIR 175 235 -27 201 74 0 0 chrX 22969223 22969250 -154004890 + (CA)n Simple_repeat Simple_repeat 1 27 0 2709 35 3 0 chrX 22970177 22970487 -154003653 + AluY SINE Alu 1 311 0 839 280 98 19 chrX 22971135 22971442 -154002698 + MLT1I LTR MaLR 62 392 -17 1172 315 45 13 chrX 22971451 22971815 -154002325 + L1ME3 LINE L1 4106 4502 -1644 351 0 0 0 chrX 22971815 22971854 -154002286 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 1172 315 45 13 chrX 22971854 22972159 -154001981 + L1ME3 LINE L1 4502 4796 -1350 * 1347 283 87 9 chrX 22972156 22972733 -154001407 + L1ME3 LINE L1 5344 5965 -205 245 308 106 0 chrX 22972808 22972912 -154001228 + L1ME3 LINE L1 5969 6083 -79 295 222 102 28 chrX 22972948 22973124 -154001016 - Charlie7 DNA MER1_type -58 2554 2366 * 1519 215 84 23 chrX 22973122 22973550 -154000590 - Charlie7 DNA MER1_type -1852 760 307 632 280 89 32 chrX 22973550 22974016 -154000124 - MLT1H1 LTR MaLR 0 582 1 435 263 195 5 chrX 22974016 22974200 -153999940 - Charlie7 DNA MER1_type -2307 305 83 216 0 0 0 chrX 22975081 22975105 -153999035 + (A)n Simple_repeat Simple_repeat 1 24 0 685 270 167 14 chrX 22975290 22975512 -153998628 - MIR SINE MIR 0 262 7 419 164 0 0 chrX 22975559 22975620 -153998520 - FRAM/FAM SINE Alu -115 61 1 402 127 0 14 chrX 22975620 22975691 -153998449 + L1MA4 LINE L1 6103 6172 -128 3328 139 30 49 chrX 22976006 22976447 -153997693 + L1MA4 LINE L1 5674 6101 -199 933 220 0 17 chrX 22976447 22976620 -153997520 - FAM SINE Alu -5 170 1 3328 139 30 49 chrX 22976620 22976816 -153997324 + L1MA4 LINE L1 6101 6299 -1 693 201 0 101 chrX 22976870 22977029 -153997111 - Tigger3(Golem) DNA MER2_type -2886 143 1 255 253 93 0 chrX 22977296 22977371 -153996769 + MIR3 SINE MIR 101 182 -26 189 163 47 0 chrX 22978707 22978750 -153995390 + MIR SINE MIR 162 206 -56 226 187 198 11 chrX 22979147 22979238 -153994902 - L1ME4a LINE L1 0 6121 6014 1618 155 42 0 chrX 22979281 22979396 -153994744 + AluJo SINE Alu 1 110 -202 498 33 0 0 chrX 22979396 22979456 -153994684 + (CA)n Simple_repeat Simple_repeat 2 61 0 1618 155 42 0 chrX 22979456 22979624 -153994516 + AluJo SINE Alu 110 296 -16 1858 95 32 4 chrX 22980169 22980448 -153993692 + AluSx SINE Alu 22 307 0 250 289 78 31 chrX 22981109 22981237 -153992903 + L1ME LINE L1 5601 5734 -387 2536 74 0 0 chrX 22981238 22981537 -153992603 + AluSg SINE Alu 1 299 -11 277 273 80 9 chrX 22982163 22982273 -153991867 - MIR SINE MIR -67 141 38 227 265 147 10 chrX 22983230 22983332 -153990808 - L2 LINE L2 -20 3252 3137 430 230 180 0 chrX 22984563 22984724 -153989416 + MER112 DNA MER1_type 70 259 -1 2402 91 0 0 chrX 22985180 22985488 -153988652 - AluY SINE Alu -3 308 1 221 349 113 21 chrX 22985589 22985970 -153988170 + L2 LINE L2 1931 2346 -968 274 256 66 41 chrX 22985971 22986092 -153988048 - MLT2F LTR ERVL 0 663 540 431 127 0 0 chrX 22986192 22986247 -153987893 - AluSg/x SINE Alu -132 180 126 2359 67 3 7 chrX 22986248 22986546 -153987594 - AluY SINE Alu -14 297 1 1400 192 47 29 chrX 22986560 22986904 -153987236 - MER74A LTR ERVL -197 361 12 186 327 144 10 chrX 22987163 22987267 -153986873 + L2 LINE L2 3154 3271 -1 188 265 0 0 chrX 22987534 22987583 -153986557 - MIR3 SINE MIR -6 202 154 1834 150 23 7 chrX 22987736 22988043 -153986097 - AluJb SINE Alu 0 312 1 295 279 78 31 chrX 22988250 22988379 -153985761 - MER5A DNA MER1_type -6 183 49 217 371 8 23 chrX 22988261 22988393 -153985747 + MER5A DNA MER1_type 35 164 -25 * 1415 140 3 74 chrX 22989051 22989336 -153984804 + AluSc SINE Alu 32 296 -13 713 195 8 0 chrX 22989965 22990083 -153984057 - FLAM_C SINE Alu -23 120 2 2441 167 112 10 chrX 22990222 22990724 -153983416 + MER4D LTR ERV1 1 553 -350 22 77 0 0 chrX 22990727 22990753 -153983387 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chrX 22993013 22993045 -153981095 + (T)n Simple_repeat Simple_repeat 1 32 0 1759 70 0 0 chrX 22993161 22993376 -153980764 + AluY SINE Alu 93 307 -4 277 294 73 0 chrX 22993787 22993855 -153980285 + MER91A DNA MER1_type 119 191 -5 337 276 262 13 chrX 22994188 22994413 -153979727 - L2 LINE L2 0 3313 3033 294 73 0 0 chrX 22994581 22994622 -153979518 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 200 0 0 chrX 22995539 22995584 -153978556 + (CCA)n Simple_repeat Simple_repeat 2 46 0 687 271 68 90 chrX 22996489 22997001 -153977139 - MLT1H LTR MaLR -7 542 42 231 327 40 0 chrX 22997072 22997173 -153976967 - MIR SINE MIR -75 187 83 360 0 0 0 chrX 22997434 22997474 -153976666 + (TC)n Simple_repeat Simple_repeat 1 40 0 380 146 49 49 chrX 22997499 22997581 -153976559 - L1MC4 LINE L1 -804 7238 7157 341 203 14 0 chrX 22998341 22998410 -153975730 - MLT1J LTR MaLR -45 466 397 192 383 32 40 chrX 22998508 22998759 -153975381 + L2 LINE L2 3010 3258 -14 1537 99 0 9 chrX 22999161 22999382 -153974758 + AluSq SINE Alu 85 303 -10 4262 149 44 19 chrX 22999814 23000514 -153973626 + LTR62 LTR ERVK 1 718 -1 414 245 65 116 chrX 23000536 23000752 -153973388 + MLT1H LTR MaLR 231 435 -114 1687 213 18 34 chrX 23001334 23001714 -153972426 - MLT1A2 LTR MaLR 0 374 1 4329 225 59 68 chrX 23001726 23003089 -153971051 - MLT1A1-int LTR MaLR -14 1357 6 1815 183 86 6 chrX 23003095 23003433 -153970707 - MLT1A1 LTR MaLR 0 365 1 2474 263 76 42 chrX 23003433 23003673 -153970467 - L2 LINE L2 -511 2803 2573 2156 159 42 3 chrX 23003673 23004007 -153970133 - MER7A DNA MER2_type 0 346 2 2474 263 76 42 chrX 23004007 23004130 -153970010 - L2 LINE L2 -741 2573 2456 1976 79 4 0 chrX 23004130 23004382 -153969758 + AluSq SINE Alu 58 310 -3 2474 263 76 42 chrX 23004382 23004874 -153969266 - L2 LINE L2 -858 2456 1918 582 139 55 0 chrX 23004984 23005149 -153968991 + (TA)n Simple_repeat Simple_repeat 2 175 0 396 277 9 0 chrX 23005149 23005261 -153968879 - L1MC4 LINE L1 -124 7918 7806 2207 108 0 25 chrX 23005266 23005581 -153968559 + AluSx SINE Alu 6 312 0 3179 85 17 7 chrX 23007356 23007778 -153966362 + L1PA14 LINE L1 5733 6158 -3 2290 90 7 3 chrX 23009526 23009826 -153964314 + AluSg SINE Alu 1 301 -9 183 162 0 0 chrX 23010232 23010269 -153963871 + (TG)n Simple_repeat Simple_repeat 1 37 0 517 297 31 5 chrX 23010529 23010721 -153963419 + L2 LINE L2 3117 3313 0 331 319 121 13 chrX 23010732 23010889 -153963251 - MIR SINE MIR -71 191 18 * 448 246 45 0 chrX 23010884 23010994 -153963146 + MER5C DNA MER1_type 10 124 -200 352 269 0 11 chrX 23011675 23011768 -153962372 + L2 LINE L2 3222 3313 0 307 323 127 25 chrX 23011779 23011937 -153962203 - MIR SINE MIR -71 191 18 * 419 234 45 9 chrX 23011932 23012043 -153962097 + MER5C DNA MER1_type 10 124 -200 27 62 0 0 chrX 23012261 23012309 -153961831 + AT_rich Low_complexity Low_complexity 1 48 0 2249 107 0 0 chrX 23012981 23013281 -153960859 + AluSg SINE Alu 1 300 -10 1848 168 10 0 chrX 23014574 23014877 -153959263 + AluJo SINE Alu 1 306 -6 384 198 159 8 chrX 23015100 23015226 -153958914 + MER5C DNA MER1_type 127 271 -53 1925 74 3 130 chrX 23015226 23015574 -153958566 - AluSp SINE Alu 0 307 1 211 330 45 0 chrX 23016311 23016399 -153957741 - MIR SINE MIR -74 188 97 831 214 31 45 chrX 23016552 23016776 -153957364 + MER45B DNA AcHobo 85 305 -735 391 172 0 0 chrX 23016779 23016843 -153957297 - MER45B DNA AcHobo -976 64 1 490 292 8 8 chrX 23016916 23017046 -153957094 - MER115 DNA AcHobo -556 137 8 275 428 29 0 chrX 23018868 23019006 -153955134 - L2 LINE L2 -13 3259 3118 1061 212 104 0 chrX 23019088 23019319 -153954821 + MIR SINE MIR 8 262 0 246 174 43 0 chrX 23019514 23019560 -153954580 + MIR SINE MIR 58 105 -157 239 174 101 64 chrX 23019715 23019824 -153954316 - MLT1F LTR MaLR -16 526 414 328 387 67 35 chrX 23020217 23020611 -153953529 - L2 LINE L2 -582 2732 2352 2364 260 40 19 chrX 23020611 23021260 -153952880 + MLT2F LTR ERVL 1 663 0 328 387 67 35 chrX 23021260 23021642 -153952498 - L2 LINE L2 -962 2352 1931 2578 55 0 0 chrX 23021743 23022051 -153952089 + AluY SINE Alu 1 308 -3 277 294 73 0 chrX 23022461 23022529 -153951611 + MER91A DNA MER1_type 119 191 -5 1050 277 128 45 chrX 23022862 23023566 -153950574 - L2 LINE L2 0 3313 2528 295 286 0 0 chrX 23023612 23023682 -153950458 + MER63 DNA MER1_type 716 785 -276 2390 232 75 33 chrX 23023682 23024342 -153949798 + L1MC4a LINE L1 6296 7000 -808 183 80 0 0 chrX 23024342 23024367 -153949773 + (TGGA)n Simple_repeat Simple_repeat 3 27 0 2390 232 75 33 chrX 23024367 23024534 -153949606 + L1MC4a LINE L1 7000 7158 -650 207 0 0 0 chrX 23024556 23024579 -153949561 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 436 197 8 68 chrX 23024583 23024715 -153949425 + L1MC4 LINE L1 7919 8042 0 1236 310 152 7 chrX 23024719 23025397 -153948743 - L2 LINE L2 -1320 1994 1219 185 266 55 73 chrX 23025995 23026104 -153948036 - MIR SINE MIR -84 124 18 4784 104 18 3 chrX 23026352 23027033 -153947107 + LTR8 LTR ERV1 1 691 0 791 264 133 42 chrX 23027158 23027586 -153946554 + MLT1H LTR MaLR 79 545 -4 243 207 60 95 chrX 23027696 23027812 -153946328 + MIR SINE MIR 85 196 -66 3759 110 77 5 chrX 23028286 23028887 -153945253 + LTR9B LTR ERV1 1 644 0 752 158 103 18 chrX 23029581 23029746 -153944394 - MER74A LTR ERVL 0 558 380 1361 111 0 11 chrX 23029773 23029962 -153944178 - AluSg/x SINE Alu 0 312 126 2340 67 3 7 chrX 23029963 23030261 -153943879 - AluY SINE Alu -14 297 1 1484 184 39 33 chrX 23030275 23030634 -153943506 - MER74A LTR ERVL -197 361 1 296 292 177 9 chrX 23030870 23030983 -153943157 + L2 LINE L2 3140 3271 -1 2882 168 74 33 chrX 23031161 23031794 -153942346 - L1MB7 LINE L1 -9 6175 5517 189 0 0 0 chrX 23031862 23031883 -153942257 + (TG)n Simple_repeat Simple_repeat 1 21 0 297 219 82 0 chrX 23032109 23032182 -153941958 - LTR16C LTR ERVL -2 489 411 248 109 236 18 chrX 23032183 23032238 -153941902 + MER51A LTR ERV1 23 89 -545 * 2481 48 6 21 chrX 23032227 23032460 -153941680 + MER51B LTR ERV1 48 276 -101 1285 55 12 0 chrX 23032460 23032624 -153941516 + L1PA7 LINE L1 5986 6151 -3 2481 48 6 21 chrX 23032624 23032725 -153941415 + MER51B LTR ERV1 276 377 0 1080 200 65 56 chrX 23033125 23033465 -153940675 - L1ME2 LINE L1 -11 6153 5811 1743 173 3 10 chrX 23033469 23033781 -153940359 - MER61B LTR ERV1 -14 411 102 542 172 19 1 chrX 23033793 23033907 -153940233 - MER61B LTR ERV1 -318 107 7 721 183 24 0 chrX 23033911 23034075 -153940065 - L1ME2 LINE L1 -345 5819 5652 2051 134 3 16 chrX 23034242 23034548 -153939592 - AluJo SINE Alu -10 302 1 1655 251 95 4 chrX 23036009 23036504 -153937636 + L1ME3A LINE L1 5622 6161 -9 203 263 35 18 chrX 23037532 23037589 -153936551 - MER5A DNA MER1_type -3 186 129 848 225 162 45 chrX 23037589 23037638 -153936502 + MLT1A2 LTR MaLR 1 43 -331 1641 73 13 60 chrX 23037638 23037687 -153936453 + AluSg/x SINE Alu 89 139 -173 2368 40 0 40 chrX 23037687 23037991 -153936149 + AluY SINE Alu 1 292 -19 1641 73 13 60 chrX 23037991 23038173 -153935967 + AluSg/x SINE Alu 139 309 -3 848 225 162 45 chrX 23038173 23038456 -153935684 + MLT1A2 LTR MaLR 43 372 -2 2458 197 38 87 chrX 23038456 23039005 -153935135 + MSTD-int LTR MaLR 3 511 -1224 2308 101 7 0 chrX 23039005 23039312 -153934828 - AluSc SINE Alu 0 309 1 2458 197 38 87 chrX 23039312 23039474 -153934666 + MSTD-int LTR MaLR 511 679 -1056 3062 205 104 42 chrX 23039495 23040265 -153933875 + MSTD-int LTR MaLR 918 1735 0 999 185 114 26 chrX 23040265 23040603 -153933537 + MSTD LTR MaLR 1 396 0 477 257 9 0 chrX 23040604 23040709 -153933431 - MER5A DNA MER1_type -80 109 4 809 222 52 12 chrX 23041559 23041807 -153932333 - L1ME3A LINE L1 -9 6161 5904 1510 145 54 8 chrX 23043062 23043304 -153930836 + AluJo SINE Alu 1 253 -59 276 279 0 15 chrX 23043399 23043467 -153930673 + MER5B DNA MER1_type 1 67 -111 2093 130 10 0 chrX 23043514 23043822 -153930318 + AluSp SINE Alu 3 313 0 990 175 0 9 chrX 23043826 23044043 -153930097 + L1MA7 LINE L1 6028 6242 -49 298 143 0 43 chrX 23044080 23044150 -153929990 + (GGGAA)n Simple_repeat Simple_repeat 5 71 0 703 279 74 13 chrX 23044161 23044390 -153929750 - L2 LINE L2 -344 2970 2728 1980 127 8 0 chrX 23044447 23044715 -153929425 - AluSx SINE Alu -16 296 27 364 200 27 27 chrX 23045003 23045113 -153929027 - MLT1H LTR MaLR -435 114 5 1621 176 21 21 chrX 23046396 23046736 -153927404 - MER58B DNA MER1_type -1 340 1 4751 77 67 17 chrX 23048360 23048510 -153925630 + L1PA14 LINE L1 5423 5564 -597 2457 60 7 7 chrX 23048510 23048812 -153925328 + AluY SINE Alu 1 302 -9 4751 77 67 17 chrX 23048812 23049362 -153924778 + L1PA14 LINE L1 5564 6158 -3 792 65 12 71 chrX 23150287 23150557 -153823583 + (CAAGG)n Simple_repeat Simple_repeat 1 254 0 739 97 2 74 chrX 23150590 23151295 -153822845 + (CAAGG)n Simple_repeat Simple_repeat 1 653 0 624 96 16 69 chrX 23151328 23151516 -153822624 + (CAAGG)n Simple_repeat Simple_repeat 2 179 0 730 102 54 41 chrX 23151545 23152027 -153822113 + (CAAGG)n Simple_repeat Simple_repeat 1 488 0 783 99 23 60 chrX 23152071 23152360 -153821780 + (CAAGG)n Simple_repeat Simple_repeat 1 278 0 2536 59 0 0 chrX 23152475 23152779 -153821361 + AluY SINE Alu 1 304 -7 440 102 0 0 chrX 23152793 23152852 -153821288 + Charlie5 DNA MER1_type 2564 2622 0 31 0 0 0 chrX 23153447 23153478 -153820662 + AT_rich Low_complexity Low_complexity 1 31 0 2059 125 0 35 chrX 23153536 23153855 -153820285 - AluJo SINE Alu -2 310 3 225 245 0 0 chrX 23154682 23154731 -153819409 + CT-rich Low_complexity Low_complexity 2 50 0 1905 120 0 4 chrX 23155486 23155752 -153818388 + AluJb SINE Alu 1 265 -47 321 126 58 19 chrX 23155852 23155955 -153818185 + (CAAGG)n Simple_repeat Simple_repeat 1 107 0 517 242 0 0 chrX 23155956 23156047 -153818093 - MER7A DNA MER2_type -254 92 4 1203 176 69 8 chrX 23156064 23156309 -153817831 + L1MD3 LINE L1 7726 7985 -10 1020 169 113 25 chrX 23156467 23156594 -153817546 + L1MD1 LINE L1 5979 6093 -266 4850 138 66 23 chrX 23156594 23157386 -153816754 + LTR1B LTR ERV1 1 826 0 1020 169 113 25 chrX 23157386 23157500 -153816640 + L1MD1 LINE L1 6093 6358 -1 1582 206 112 60 chrX 23158081 23158555 -153815585 + L1MC4 LINE L1 7281 7729 -313 1610 157 75 7 chrX 23158555 23158835 -153815305 + AluJb SINE Alu 1 299 -13 1582 206 112 60 chrX 23158835 23158971 -153815169 + L1MC4 LINE L1 7729 7927 -115 234 0 0 0 chrX 23158971 23158997 -153815143 + (TG)n Simple_repeat Simple_repeat 2 27 0 1582 206 112 60 chrX 23158997 23159017 -153815123 + L1MC4 LINE L1 7927 7945 -97 25 0 0 0 chrX 23159139 23159164 -153814976 + AT_rich Low_complexity Low_complexity 1 25 0 1939 158 10 0 chrX 23159732 23160035 -153814105 + AluJb SINE Alu 1 306 -6 940 136 0 0 chrX 23160159 23160299 -153813841 - AluY SINE Alu -171 140 1 706 113 64 0 chrX 23160300 23160441 -153813699 - Charlie5 DNA MER1_type -123 2489 2340 2571 55 3 0 chrX 23160580 23160888 -153813252 + AluY SINE Alu 1 309 -2 2324 215 72 19 chrX 23164987 23165628 -153808512 - L1M4 LINE L1 -755 5391 4717 821 154 59 0 chrX 23165630 23165766 -153808374 - AluJ SINE Alu -14 298 155 866 171 27 7 chrX 23165830 23165976 -153808164 - AluJ SINE Alu -163 149 1 3462 222 45 45 chrX 23165996 23167071 -153807069 - L1M4 LINE L1 -1447 4699 3625 956 138 132 0 chrX 23167071 23167230 -153806910 + L1MC1 LINE L1 6106 6285 -48 1341 253 146 16 chrX 23167272 23167422 -153806718 - L1M4 LINE L1 -2519 3627 3498 376 19 38 0 chrX 23167422 23167475 -153806665 + (TA)n Simple_repeat Simple_repeat 2 56 0 1341 253 146 16 chrX 23167475 23167898 -153806242 - L1M4 LINE L1 -2648 3498 2979 1289 91 178 5 chrX 23168022 23168287 -153805853 + THE1B LTR MaLR 1 355 0 2086 99 53 0 chrX 23168670 23168953 -153805187 + AluSx SINE Alu 1 298 -14 1605 109 0 0 chrX 23169221 23169431 -153804709 + AluSg/x SINE Alu 80 289 -23 392 328 107 83 chrX 23169769 23170002 -153804138 + L1MEd LINE L1 461 687 -5432 3540 148 22 39 chrX 23170002 23170624 -153803516 + LTR9 LTR ERV1 1 612 0 392 328 107 83 chrX 23170624 23170851 -153803289 + L1MEd LINE L1 687 907 -5212 3581 109 49 73 chrX 23170851 23171466 -153802674 - MER4A LTR ERV1 0 600 1 392 328 107 83 chrX 23171466 23171522 -153802618 + L1MEd LINE L1 907 960 -5159 2072 121 0 23 chrX 23171522 23171829 -153802311 - AluSx SINE Alu -12 300 1 392 328 107 83 chrX 23171829 23171901 -153802239 + L1MEd LINE L1 960 1065 -5054 237 325 44 0 chrX 23171901 23172015 -153802125 - LTR16A LTR ERVL -157 293 175 254 254 15 15 chrX 23172384 23172451 -153801689 + GA-rich Low_complexity Low_complexity 2 68 0 1803 167 42 0 chrX 23172468 23172756 -153801384 + AluJo SINE Alu 1 300 -12 244 314 113 35 chrX 23172907 23173136 -153801004 + MLT1H LTR MaLR 98 344 -205 * 255 250 42 42 chrX 23173134 23173230 -153800910 + MLT1H LTR MaLR 454 549 0 579 216 44 24 chrX 23173857 23173893 -153800247 + MLT1H LTR MaLR 232 266 -283 2521 122 22 17 chrX 23173893 23174255 -153799885 - THE1B LTR MaLR 0 364 1 579 216 44 24 chrX 23174255 23174416 -153799724 + MLT1H LTR MaLR 266 549 0 663 293 116 52 chrX 23174596 23175442 -153798698 + L2 LINE L2 2455 3309 -4 320 174 35 35 chrX 23176192 23176278 -153797862 + MLT1H LTR MaLR 459 544 -5 189 242 113 0 chrX 23176290 23176352 -153797788 + L2 LINE L2 2678 2746 -568 216 97 0 0 chrX 23176440 23176471 -153797669 + (TG)n Simple_repeat Simple_repeat 1 31 0 2452 81 0 0 chrX 23177426 23177736 -153796404 - AluSg SINE Alu 0 310 1 582 276 91 66 chrX 23177836 23178288 -153795852 + MLT1H LTR MaLR 81 543 -6 207 0 0 0 chrX 23178525 23178548 -153795592 + (T)n Simple_repeat Simple_repeat 1 23 0 189 107 0 0 chrX 23178617 23178645 -153795495 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 24 53 0 0 chrX 23179258 23179296 -153794844 + AT_rich Low_complexity Low_complexity 1 38 0 201 156 0 0 chrX 23179457 23179489 -153794651 + (TAG)n Simple_repeat Simple_repeat 3 34 0 2281 101 3 0 chrX 23181280 23181586 -153792554 + AluSx SINE Alu 1 307 -5 32 26 0 0 chrX 23182832 23182871 -153791269 + AT_rich Low_complexity Low_complexity 1 39 0 214 346 0 0 chrX 23183239 23183291 -153790849 - L2 LINE L2 -119 3153 3102 188 306 68 54 chrX 23183345 23183492 -153790648 + L2 LINE L2 2911 3059 -213 2394 80 0 10 chrX 23184513 23184824 -153789316 - AluSg SINE Alu -2 308 1 309 232 141 0 chrX 23184885 23184984 -153789156 - L1MC5 LINE L1 -23 7938 7826 705 266 73 40 chrX 23185087 23185335 -153788805 + MIR SINE MIR 1 256 -6 219 308 154 0 chrX 23185577 23185707 -153788433 + MIR SINE MIR 101 250 -12 2128 120 7 0 chrX 23186721 23187013 -153787127 - AluSx SINE Alu -18 294 1 432 252 0 0 chrX 23187831 23187938 -153786202 + MIR SINE MIR 100 206 -56 262 163 0 23 chrX 23188189 23188232 -153785908 + HUERS-P3 LTR ERV1 7557 7598 -1321 1060 163 21 32 chrX 23189381 23189571 -153784569 + MER58A DNA MER1_type 37 224 0 1844 163 0 10 chrX 23189869 23190163 -153783977 + AluJb SINE Alu 1 291 -21 1319 154 9 39 chrX 23192145 23192378 -153781762 - AluJb SINE Alu -8 304 79 1738 91 0 0 chrX 23192933 23193152 -153780988 + AluSx SINE Alu 50 268 -44 1313 58 6 17 chrX 23193397 23193570 -153780570 - AluSq SINE Alu -142 171 1 5534 155 59 79 chrX 23193570 23193947 -153780193 - L1MA9 LINE L1 -346 5966 5583 1459 160 21 83 chrX 23193947 23194146 -153779994 - AluJb SINE Alu -7 305 132 2016 98 25 60 chrX 23194146 23194462 -153779678 + AluSq SINE Alu 2 306 -7 1459 160 21 83 chrX 23194462 23194587 -153779553 - AluJb SINE Alu -180 132 1 5534 155 59 79 chrX 23194587 23195712 -153778428 - L1MA9 LINE L1 -729 5583 4438 1378 174 66 35 chrX 23195712 23195999 -153778141 - AluJo SINE Alu -16 296 1 5534 155 59 79 chrX 23195999 23196180 -153777960 - L1MA9 LINE L1 -1874 4438 4255 2440 91 3 0 chrX 23196180 23196488 -153777652 - AluSg SINE Alu -1 309 1 5534 155 59 79 chrX 23196488 23196826 -153777314 - L1MA9 LINE L1 -2057 4255 3975 1282 186 41 41 chrX 23196825 23197143 -153776997 - L1MA7 LINE L1 0 6291 5974 * 226 146 42 0 chrX 23197399 23197447 -153776693 - L1MA6 LINE L1 -117 6183 6134 7764 35 39 3 chrX 23197454 23198871 -153775269 - SVA Other Other -839 1382 31 392 176 71 0 chrX 23199452 23199537 -153774603 + L1M4 LINE L1 2452 2542 -3604 10268 175 151 19 chrX 23199579 23201267 -153772873 + L1PA13 LINE L1 2 1465 -5332 1922 137 31 3 chrX 23201267 23201560 -153772580 - AluSx SINE Alu -11 301 1 10268 175 151 19 chrX 23201560 23202037 -153772103 + L1PA13 LINE L1 1465 1878 -4919 1806 155 4 4 chrX 23202037 23202315 -153771825 - AluJo SINE Alu -21 291 14 10268 175 151 19 chrX 23202315 23202356 -153771784 + L1PA13 LINE L1 1878 2516 -4281 690 163 0 0 chrX 23202357 23202455 -153771685 + AluJ/FLAM SINE Alu 2 99 -213 1372 128 0 10 chrX 23202555 23202759 -153771381 + AluSg/x SINE Alu 84 285 -25 11510 166 39 35 chrX 23202773 23203614 -153770526 + L1PA13 LINE L1 3951 4787 -2027 2392 86 3 3 chrX 23203614 23203915 -153770225 + AluSg SINE Alu 1 301 -9 11510 166 39 35 chrX 23203915 23205192 -153768948 + L1PA13 LINE L1 4787 6057 -757 2301 85 0 0 chrX 23205192 23205473 -153768667 + AluSg SINE Alu 1 281 -29 11510 166 39 35 chrX 23205473 23205553 -153768587 + L1PA13 LINE L1 6057 6135 -679 2044 146 154 19 chrX 23205553 23205930 -153768210 - MSTA LTR MaLR 0 428 1 11510 166 39 35 chrX 23205930 23206515 -153767625 + L1PA13 LINE L1 6135 6800 -14 23 0 0 0 chrX 23206854 23206877 -153767263 + AT_rich Low_complexity Low_complexity 1 23 0 339 261 155 21 chrX 23207521 23207663 -153766477 + L1ME4a LINE L1 5961 6121 0 2148 126 7 3 chrX 23207812 23208121 -153766019 + AluJb SINE Alu 1 310 -2 1091 227 58 110 chrX 23208124 23208211 -153765929 + MLT1H LTR MaLR 95 185 -364 1851 154 3 20 chrX 23208211 23208503 -153765637 + AluJb SINE Alu 9 295 -17 1091 227 58 110 chrX 23208503 23208895 -153765245 + MLT1H LTR MaLR 185 549 0 2516 63 0 3 chrX 23208929 23209231 -153764909 + AluY SINE Alu 1 301 -10 30 27 0 0 chrX 23209904 23209941 -153764199 + AT_rich Low_complexity Low_complexity 1 37 0 1738 136 34 20 chrX 23210010 23210305 -153763835 + AluJb SINE Alu 1 299 -13 962 156 6 62 chrX 23210435 23210614 -153763526 - AluJo SINE Alu -142 170 2 1710 167 0 23 chrX 23211519 23211824 -153762316 + AluJb SINE Alu 1 298 -14 23 0 0 0 chrX 23212044 23212067 -153762073 + AT_rich Low_complexity Low_complexity 1 23 0 2052 117 14 0 chrX 23212651 23212941 -153761199 + AluSg SINE Alu 1 294 -16 2329 102 0 7 chrX 23213689 23213710 -153760430 - AluSx SINE Alu 0 312 292 181 0 0 0 chrX 23213710 23213730 -153760410 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2329 102 0 7 chrX 23213730 23214013 -153760127 - AluSx SINE Alu -20 292 1 258 282 55 0 chrX 23214214 23214324 -153759816 - L1MC4 LINE L1 0 8042 7927 2106 113 6 39 chrX 23214703 23215014 -153759126 + AluSg SINE Alu 1 301 -9 405 102 0 0 chrX 23215014 23215041 -153759099 + (CA)n Simple_repeat Simple_repeat 1 86 0 405 102 0 0 chrX 23215041 23215100 -153759040 + (CA)n Simple_repeat Simple_repeat 2 60 0 535 234 117 0 chrX 23215233 23215404 -153758736 - L1MC4a LINE L1 -1876 5932 5742 1036 98 0 0 chrX 23216572 23216705 -153757435 - AluSp SINE Alu -180 133 1 1859 56 5 0 chrX 23220865 23221080 -153753060 + AluSp SINE Alu 1 216 -97 2307 92 0 10 chrX 23221296 23221602 -153752538 + AluSg SINE Alu 1 303 -7 2308 101 0 7 chrX 23222066 23222364 -153751776 + AluSx SINE Alu 1 296 -16 673 174 0 0 chrX 23223371 23223480 -153750660 + AluJb SINE Alu 2 110 -202 900 147 0 0 chrX 23223481 23223637 -153750503 + AluSg/x SINE Alu 154 309 0 874 74 33 48 chrX 23223799 23224087 -153750053 + (CCTTG)n Simple_repeat Simple_repeat 1 283 0 629 80 0 101 chrX 23224134 23224333 -153749807 + (CCTTG)n Simple_repeat Simple_repeat 1 179 0 832 84 31 57 chrX 23224354 23225700 -153748440 + (CCTTG)n Simple_repeat Simple_repeat 1 1311 0 755 116 9 70 chrX 23225734 23226401 -153747739 + (CCTTG)n Simple_repeat Simple_repeat 1 626 0 731 95 31 61 chrX 23226428 23227177 -153746963 + (CCTTG)n Simple_repeat Simple_repeat 1 726 0 955 92 15 51 chrX 23227197 23227794 -153746346 + (CCTTG)n Simple_repeat Simple_repeat 1 761 0 549 112 0 87 chrX 23227806 23228002 -153746138 + (CCTTG)n Simple_repeat Simple_repeat 1 179 0 921 36 5 78 chrX 23228032 23228224 -153745916 + (CCTTG)n Simple_repeat Simple_repeat 1 178 0 841 83 0 80 chrX 23228243 23228524 -153745616 + (CCTTG)n Simple_repeat Simple_repeat 1 258 0 665 82 0 92 chrX 23228539 23228734 -153745406 + (CCTTG)n Simple_repeat Simple_repeat 2 178 0 907 78 0 83 chrX 23228753 23229341 -153744799 + (CCTTG)n Simple_repeat Simple_repeat 2 716 0 989 93 15 68 chrX 23229371 23231566 -153742574 + (CCTTG)n Simple_repeat Simple_repeat 1 2257 0 675 82 0 87 chrX 23231602 23231798 -153742342 + (CCTTG)n Simple_repeat Simple_repeat 2 180 0 841 97 17 56 chrX 23231855 23232236 -153741904 + (CCTTG)n Simple_repeat Simple_repeat 1 366 0 834 115 22 51 chrX 23232274 23233390 -153740750 + (CCTTG)n Simple_repeat Simple_repeat 1 1083 0 424 134 58 35 chrX 23233404 23233525 -153740615 + (CCTTG)n Simple_repeat Simple_repeat 2 130 -46 1714 73 0 9 chrX 23233525 23233745 -153740395 - AluY SINE Alu -11 300 83 424 134 58 35 chrX 23233745 23233794 -153740346 + (CCTTG)n Simple_repeat Simple_repeat 130 176 0 619 111 28 69 chrX 23233808 23234180 -153739960 + (CCTTG)n Simple_repeat Simple_repeat 1 356 0 676 107 0 73 chrX 23234228 23234615 -153739525 + (CCTTG)n Simple_repeat Simple_repeat 1 358 0 872 77 0 72 chrX 23234650 23234844 -153739296 + (CCTTG)n Simple_repeat Simple_repeat 1 180 0 1975 140 13 3 chrX 23236884 23237184 -153736956 + AluJo SINE Alu 1 303 -9 549 238 85 16 chrX 23237202 23237391 -153736749 - L1MC5 LINE L1 -37 7924 7723 1385 122 31 0 chrX 23237588 23237784 -153736356 - AluJo SINE Alu -24 288 87 1869 157 20 13 chrX 23238022 23238321 -153735819 - AluJo SINE Alu -11 301 1 1958 145 142 16 chrX 23241204 23241584 -153732556 + MSTA LTR MaLR 1 428 0 4868 120 39 20 chrX 23242271 23242449 -153731691 - L1MA8 LINE L1 0 6291 6118 757 132 0 52 chrX 23242449 23242585 -153731555 - FLAM_C SINE Alu -4 129 1 4868 120 39 20 chrX 23242585 23243209 -153730931 - L1MA8 LINE L1 -173 6118 5474 2041 107 47 23 chrX 23243209 23243509 -153730631 + AluSx SINE Alu 1 307 -5 2928 153 42 4 chrX 23243510 23244039 -153730101 - L1MA8 LINE L1 -802 5344 4796 346 71 0 0 chrX 23244039 23244081 -153730059 - MSTA LTR MaLR -1 427 386 6259 109 36 3 chrX 23244081 23244956 -153729184 + L1PB1 LINE L1 4891 5816 -335 270 0 0 0 chrX 23244956 23244986 -153729154 + (CA)n Simple_repeat Simple_repeat 2 31 0 6259 109 36 3 chrX 23244986 23245332 -153728808 + L1PB1 LINE L1 5816 6149 -2 186 43 0 0 chrX 23245338 23245361 -153728779 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 459 35 0 0 chrX 23245360 23245417 -153728723 + (GA)n Simple_repeat Simple_repeat 2 58 0 1743 166 72 33 chrX 23245459 23245821 -153728319 - MSTA LTR MaLR -27 401 26 5569 213 48 26 chrX 23245821 23246810 -153727330 - L1M4 LINE L1 -2112 4034 2999 2054 141 7 7 chrX 23246810 23247116 -153727024 - AluSx SINE Alu -6 306 1 5569 213 48 26 chrX 23247116 23247654 -153726486 - L1M4 LINE L1 -3147 2999 2474 646 284 0 5 chrX 23247695 23247892 -153726248 - MIR SINE MIR 0 262 67 2233 114 13 0 chrX 23248193 23248501 -153725639 + AluSq SINE Alu 1 312 -1 1929 198 88 39 chrX 23248504 23248793 -153725347 + L1MA10 LINE L1 5825 6098 -236 1758 126 0 0 chrX 23248793 23249040 -153725100 - AluSx SINE Alu -9 303 57 1929 198 88 39 chrX 23249040 23249090 -153725050 + L1MA10 LINE L1 6098 6144 -190 1577 151 12 23 chrX 23249090 23249348 -153724792 + AluJo SINE Alu 11 265 -47 318 87 0 0 chrX 23249357 23249403 -153724737 + (CA)n Simple_repeat Simple_repeat 2 47 0 1929 198 88 39 chrX 23249403 23249538 -153724602 + L1MA10 LINE L1 6151 6334 0 390 185 131 4 chrX 23250106 23250247 -153723893 + L1MD3 LINE L1 6200 7987 -2 1028 156 0 12 chrX 23250578 23250745 -153723395 + FRAM SINE Alu 2 166 0 1867 178 57 0 chrX 23251057 23251406 -153722734 + L1MA9 LINE L1 5767 6135 -177 1478 142 0 0 chrX 23251406 23251618 -153722522 - AluSg/x SINE Alu -17 295 84 906 198 0 12 chrX 23251649 23251816 -153722324 - AluJb SINE Alu -8 304 140 1250 169 0 0 chrX 23252061 23252244 -153721896 - AluJo SINE Alu -125 187 5 351 265 26 17 chrX 23252628 23252745 -153721395 + MER5B DNA MER1_type 61 178 0 360 0 0 0 chrX 23252823 23252863 -153721277 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 1944 134 0 4 chrX 23252870 23253147 -153720993 - AluJb SINE Alu -36 276 1 2550 47 0 3 chrX 23253410 23253710 -153720430 + AluY SINE Alu 1 299 -12 819 70 0 0 chrX 23253868 23253968 -153720172 + AluSp/q SINE Alu 198 297 -16 1801 170 31 0 chrX 23254196 23254490 -153719650 + AluJb SINE Alu 1 303 -9 650 233 86 14 chrX 23255448 23255658 -153718482 - L1ME3 LINE L1 -16 6146 5922 315 267 0 0 chrX 23256061 23256136 -153718004 + L2 LINE L2 3236 3310 -3 1858 124 6 64 chrX 23256345 23256659 -153717481 - AluJo SINE Alu -16 296 1 1345 226 7 14 chrX 23256900 23257175 -153716965 + AluJo SINE Alu 1 273 -39 671 92 16 65 chrX 23257242 23257426 -153716714 + (CAAGG)n Simple_repeat Simple_repeat 3 177 0 780 87 61 33 chrX 23257438 23257745 -153716395 + (CAAGG)n Simple_repeat Simple_repeat 1 315 0 745 103 2 75 chrX 23257761 23258203 -153715937 + (CAAGG)n Simple_repeat Simple_repeat 1 409 0 760 115 26 59 chrX 23258257 23258704 -153715436 + (CAAGG)n Simple_repeat Simple_repeat 1 432 0 811 66 0 82 chrX 23258726 23258922 -153715218 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 689 79 13 84 chrX 23258935 23259194 -153714946 + (CAAGG)n Simple_repeat Simple_repeat 1 240 0 628 129 19 65 chrX 23259245 23259714 -153714426 + (CAAGG)n Simple_repeat Simple_repeat 1 447 0 568 126 23 56 chrX 23259753 23260033 -153714107 + (CAAGG)n Simple_repeat Simple_repeat 1 270 0 722 98 23 63 chrX 23260044 23260573 -153713567 + (CAAGG)n Simple_repeat Simple_repeat 1 507 0 321 142 90 15 chrX 23260590 23260724 -153713416 + (CAAGG)n Simple_repeat Simple_repeat 5 148 0 270 129 71 29 chrX 23260743 23260813 -153713327 + (CAAGG)n Simple_repeat Simple_repeat 1 73 0 628 113 0 77 chrX 23260827 23261021 -153713119 + (CAAGG)n Simple_repeat Simple_repeat 2 180 0 759 93 16 55 chrX 23261049 23261232 -153712908 + (CAAGG)n Simple_repeat Simple_repeat 1 176 0 700 95 5 69 chrX 23261263 23261452 -153712688 + (CAAGG)n Simple_repeat Simple_repeat 1 177 0 576 81 75 46 chrX 23261523 23261697 -153712443 + (CAAGG)n Simple_repeat Simple_repeat 1 179 0 640 115 47 46 chrX 23261730 23262079 -153712061 + (CAAGG)n Simple_repeat Simple_repeat 1 349 0 737 96 16 59 chrX 23262121 23262308 -153711832 + (CAAGG)n Simple_repeat Simple_repeat 1 179 0 645 82 0 93 chrX 23262322 23262516 -153711624 + (CAAGG)n Simple_repeat Simple_repeat 2 177 0 712 82 0 82 chrX 23262553 23262749 -153711391 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 499 118 56 45 chrX 23262790 23262968 -153711172 + (CAAGG)n Simple_repeat Simple_repeat 1 180 0 884 74 32 49 chrX 23262997 23263411 -153710729 + (CAAGG)n Simple_repeat Simple_repeat 1 406 0 676 98 14 68 chrX 23263439 23263674 -153710466 + (CAAGG)n Simple_repeat Simple_repeat 1 222 0 510 252 150 39 chrX 23263814 23264127 -153710013 + HAL1 LINE L1 1122 1482 -1025 2121 119 3 3 chrX 23264127 23264421 -153709719 + AluSq SINE Alu 1 294 -19 510 252 150 39 chrX 23264421 23264468 -153709672 + HAL1 LINE L1 1482 1522 -985 1849 174 56 34 chrX 23264514 23264931 -153709209 - LTR8 LTR ERV1 0 691 307 448 163 201 121 chrX 23264945 23265102 -153709038 - LTR8A LTR ERV1 -487 204 20 2135 71 49 0 chrX 23265102 23265369 -153708771 + AluYa5 SINE Alu 1 320 0 281 0 50 0 chrX 23265369 23265409 -153708731 + (CAAAA)n Simple_repeat Simple_repeat 1 165 0 448 163 201 121 chrX 23265409 23265431 -153708709 - LTR8A LTR ERV1 -671 20 1 548 296 83 11 chrX 23265458 23265735 -153708405 + HAL1 LINE L1 1607 1903 -604 1365 107 8 0 chrX 23266207 23266425 -153707715 + L1PA11 LINE L1 5950 6150 -4 1412 196 48 33 chrX 23266444 23266858 -153707282 - LTR48B LTR ERV1 0 644 174 261 176 324 0 chrX 23266946 23267020 -153707120 - MER39 LTR ERV1 -608 99 2 1917 172 87 18 chrX 23267104 23267540 -153706600 - MER31B LTR ERV1 0 466 1 229 340 135 40 chrX 23267814 23268058 -153706082 + L2 LINE L2 1933 2225 -1089 4200 172 77 49 chrX 23268058 23269051 -153705089 - LTR28 LTR ERV1 0 1020 1 229 340 135 40 chrX 23269051 23269176 -153704964 + L2 LINE L2 2225 2337 -977 1197 212 108 8 chrX 23269188 23269659 -153704481 + L1MB7 LINE L1 2948 3465 -2681 1286 163 4 4 chrX 23269698 23269925 -153704215 - MLT2B1 LTR ERVL -293 227 1 3925 201 99 28 chrX 23269944 23270080 -153704060 + L1MB7 LINE L1 3725 3850 -2334 2016 143 109 20 chrX 23270080 23270473 -153703667 - MSTA LTR MaLR 0 428 1 3925 201 99 28 chrX 23270473 23271608 -153702532 + L1MB7 LINE L1 3850 4904 -1280 2149 88 35 0 chrX 23271608 23271892 -153702248 + AluSq SINE Alu 1 294 -19 2339 79 0 0 chrX 23271894 23272202 -153701938 + AluSc SINE Alu 1 308 0 3925 201 99 28 chrX 23272202 23272563 -153701577 + L1MB7 LINE L1 4904 5238 -946 1832 150 0 0 chrX 23272563 23272843 -153701297 - AluJb SINE Alu -30 282 3 3925 201 99 28 chrX 23272843 23273161 -153700979 + L1MB7 LINE L1 5238 5532 -652 2426 97 3 0 chrX 23273161 23273470 -153700670 + AluSp SINE Alu 1 310 -3 3925 201 99 28 chrX 23273470 23273798 -153700342 + L1MB7 LINE L1 5532 6168 -16 562 243 21 0 chrX 23273934 23274078 -153700062 + MLT1H1 LTR MaLR 407 553 -2 2304 122 0 0 chrX 23274156 23274468 -153699672 + AluSx SINE Alu 1 312 0 431 252 9 0 chrX 23274964 23275071 -153699069 + MIR SINE MIR 82 189 -73 1097 41 0 0 chrX 23275091 23275237 -153698903 - L1PA5 LINE L1 -84 6070 5925 391 19 39 0 chrX 23275237 23275285 -153698855 + L1PA6 LINE L1 6099 6152 -2 32376 32 2 0 chrX 23275455 23280318 -153693822 + L1PA4 LINE L1 1283 6152 -3 1202 182 0 78 chrX 23280363 23280605 -153693535 + MER58A DNA MER1_type 1 223 -1 1995 115 7 11 chrX 23280782 23281069 -153693071 + AluSx SINE Alu 1 286 -26 359 326 60 38 chrX 23281493 23281677 -153692463 + MIR SINE MIR 33 220 -42 1919 142 3 35 chrX 23281698 23282009 -153692131 + AluJo SINE Alu 1 301 -11 1375 207 35 31 chrX 23282018 23282308 -153691832 + AluJo SINE Alu 1 291 -21 1161 166 221 28 chrX 23282322 23282575 -153691565 - AluJo SINE Alu 0 302 1 221 219 12 0 chrX 23282907 23282979 -153691161 + L2 LINE L2 2889 2964 -310 1008 58 0 0 chrX 23283272 23283393 -153690747 - AluY SINE Alu -189 122 2 195 314 29 0 chrX 23283833 23283903 -153690237 + L2 LINE L2 3231 3302 -11 560 175 103 48 chrX 23284421 23284547 -153689593 - FLAM_A SINE Alu 0 133 1 2344 62 0 42 chrX 23284904 23285211 -153688929 + AluY SINE Alu 1 294 -17 221 354 103 14 chrX 23285945 23286168 -153687972 + L2 LINE L2 2719 2961 -353 406 401 22 9 chrX 23288129 23288351 -153685789 - L3 LINE CR1 -909 668 444 245 365 27 0 chrX 23288469 23288543 -153685597 + MIR SINE MIR 19 94 -168 430 282 17 8 chrX 23288595 23288712 -153685428 + MIR SINE MIR 90 207 -55 2217 149 60 14 chrX 23288771 23289188 -153684952 + L1MB7 LINE L1 5741 6176 -8 1259 118 168 1 chrX 23289897 23290181 -153683959 - MER33 DNA MER1_type 0 324 1 2394 194 64 43 chrX 23291719 23292300 -153681840 + MLT1E LTR MaLR 1 593 0 331 288 119 0 chrX 23292501 23292619 -153681521 - L2 LINE L2 -9 3304 3173 2548 53 0 31 chrX 23293474 23293795 -153680345 + AluY SINE Alu 1 311 0 233 207 33 58 chrX 23293913 23294034 -153680106 + A-rich Low_complexity Low_complexity 4 121 0 875 243 70 0 chrX 23294067 23294359 -153679781 + L1ME LINE L1 5504 5818 -352 719 258 107 51 chrX 23294797 23295234 -153678906 + L1MEd LINE L1 988 1499 -991 192 152 0 0 chrX 23295350 23295383 -153678757 + A-rich Low_complexity Low_complexity 1 33 0 254 383 42 33 chrX 23295747 23295987 -153678153 + L3 LINE CR1 133 374 -1203 27 62 0 0 chrX 23296008 23296056 -153678084 + AT_rich Low_complexity Low_complexity 1 48 0 300 256 53 111 chrX 23296235 23296442 -153677698 + MIR3 SINE MIR 8 202 -6 800 296 108 78 chrX 23296452 23297044 -153677096 + L3 LINE CR1 655 1264 -313 262 308 15 62 chrX 23297107 23297237 -153676903 + L3 LINE CR1 1452 1575 -2 190 302 0 32 chrX 23297293 23297356 -153676784 - MIR SINE MIR -1 261 201 253 333 17 85 chrX 23298002 23298179 -153675961 - MIR3 SINE MIR -3 205 41 21 36 0 0 chrX 23298857 23298885 -153675255 + AT_rich Low_complexity Low_complexity 1 28 0 2333 90 0 10 chrX 23299143 23299442 -153674698 - AluSc SINE Alu -13 296 1 319 277 39 82 chrX 23301518 23301619 -153672521 + L2 LINE L2 1803 1907 -1407 2485 65 0 0 chrX 23301619 23301911 -153672229 + AluSc SINE Alu 1 292 -17 319 277 39 82 chrX 23301911 23302040 -153672100 + L2 LINE L2 1907 2023 -1291 1805 178 4 0 chrX 23302058 23302339 -153671801 + AluJo SINE Alu 1 282 -30 189 0 0 0 chrX 23302339 23302360 -153671780 + (TA)n Simple_repeat Simple_repeat 2 22 0 2037 138 14 0 chrX 23302520 23302810 -153671330 - AluSx SINE Alu -18 294 1 522 301 107 5 chrX 23303813 23304009 -153670131 + MIR SINE MIR 3 218 -44 2514 74 3 0 chrX 23304147 23304457 -153669683 + AluSp SINE Alu 1 311 -2 24 0 0 0 chrX 23304458 23304482 -153669658 + AT_rich Low_complexity Low_complexity 1 24 0 235 372 83 16 chrX 23304522 23304643 -153669497 + MIR SINE MIR 19 147 -61 2349 89 3 0 chrX 23305057 23305361 -153668779 - AluSp SINE Alu -8 305 1 206 398 64 23 chrX 23306279 23306450 -153667690 + MIR3 SINE MIR 14 191 -17 2138 112 7 0 chrX 23306825 23307120 -153667020 + AluSx SINE Alu 1 297 -15 407 158 79 0 chrX 23307148 23307313 -153666827 + (TA)n Simple_repeat Simple_repeat 1 178 0 253 309 103 48 chrX 23307350 23307515 -153666625 + MIR SINE MIR 39 212 -50 1373 96 0 0 chrX 23307594 23307772 -153666368 - AluSp SINE Alu -2 311 134 2506 37 7 3 chrX 23307772 23308066 -153666074 - AluY SINE Alu -15 296 2 248 111 19 0 chrX 23309746 23309800 -153664340 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 671 169 69 0 chrX 23310562 23310692 -153663448 - MER33 DNA MER1_type -184 140 2 228 176 0 20 chrX 23310826 23310877 -153663263 + (TTG)n Simple_repeat Simple_repeat 2 51 0 418 205 41 8 chrX 23311348 23311470 -153662670 + L1MC5 LINE L1 7719 7844 -117 2350 128 0 0 chrX 23312640 23312952 -153661188 + AluSx SINE Alu 1 312 0 2588 62 0 0 chrX 23313174 23313482 -153660658 + AluY SINE Alu 2 309 -2 1900 102 80 11 chrX 23313729 23314003 -153660137 + AluSx SINE Alu 1 293 -19 200 80 0 100 chrX 23314370 23314420 -153659720 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 2110 81 4 7 chrX 23314747 23315020 -153659120 + AluY SINE Alu 31 302 -9 35 0 0 0 chrX 23516554 23516589 -153457551 + AT_rich Low_complexity Low_complexity 1 35 0 287 128 0 0 chrX 23517083 23517122 -153457018 - FLAM_A SINE Alu -12 121 83 739 160 0 0 chrX 23517122 23517228 -153456912 - FLAM_A SINE Alu -36 106 1 716 292 111 46 chrX 23517506 23517921 -153456219 - MLT1H1 LTR MaLR -5 550 109 1850 142 35 3 chrX 23518022 23518144 -153455996 + AluJb SINE Alu 1 118 -194 222 37 0 0 chrX 23518144 23518171 -153455969 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1850 142 35 3 chrX 23518171 23518330 -153455810 + AluJb SINE Alu 118 291 -21 281 317 41 28 chrX 23518920 23519065 -153455075 + MIR SINE MIR 116 262 0 371 181 0 14 chrX 23519599 23519671 -153454469 + HsTC2 DNA Tc2 4 74 -1824 458 269 28 9 chrX 23520439 23520547 -153453593 + MIR3 SINE MIR 46 155 -53 445 262 234 7 chrX 23521449 23521590 -153452550 + L2 LINE L2 3136 3308 -5 694 61 0 51 chrX 23521613 23521657 -153452483 + L1MA2 LINE L1 6212 6257 -47 2308 103 0 7 chrX 23521657 23521959 -153452181 + AluSx SINE Alu 1 300 -12 694 61 0 51 chrX 23521959 23522012 -153452128 + L1MA2 LINE L1 6257 6304 0 228 321 49 0 chrX 23523027 23523108 -153451032 + L2 LINE L2 3173 3257 -15 2222 118 0 0 chrX 23523262 23523567 -153450573 - AluSx SINE Alu -6 306 2 791 151 44 63 chrX 23524308 23524467 -153449673 + MIR SINE MIR 77 232 -30 197 329 29 0 chrX 23525644 23525714 -153448426 + MIR3 SINE MIR 104 175 -33 371 215 37 37 chrX 23526498 23526605 -153447535 + MIR SINE MIR 124 230 -32 1219 131 56 49 chrX 23526910 23527093 -153447047 + MER33 DNA MER1_type 55 243 -2342 2169 96 0 0 chrX 23527093 23527401 -153446739 - AluY SINE Alu 0 308 1 1219 131 56 49 chrX 23527401 23527483 -153446657 + MER33 DNA MER1_type 243 323 -1 443 180 80 30 chrX 23527526 23527626 -153446514 + L2 LINE L2 3168 3272 0 1178 243 93 27 chrX 23528014 23528380 -153445760 + LTR16C LTR ERVL 4 393 -98 2679 159 19 47 chrX 23528381 23528895 -153445245 + MLT1D LTR MaLR 6 505 0 485 218 0 0 chrX 23528895 23528981 -153445159 + LTR16C LTR ERVL 385 470 -21 826 159 129 29 chrX 23529605 23529775 -153444365 + MER5A DNA MER1_type 2 188 -1 685 262 110 5 chrX 23530425 23530616 -153443524 + MER58A DNA MER1_type 6 216 -8 505 287 57 29 chrX 23532312 23532577 -153441563 - MLT1J2 LTR MaLR -124 285 17 327 104 0 0 chrX 23532772 23532820 -153441320 + (A)n Simple_repeat Simple_repeat 1 48 0 223 163 23 23 chrX 23532995 23533038 -153441102 + L2 LINE L2 3207 3249 -23 183 80 0 0 chrX 23533321 23533346 -153440794 + (TG)n Simple_repeat Simple_repeat 2 26 0 677 183 57 80 chrX 23533498 23533673 -153440467 - MER5A DNA MER1_type -2 187 17 1275 150 13 44 chrX 23535493 23535719 -153438421 - MER20 DNA MER1_type 0 219 1 490 196 209 26 chrX 23535909 23536062 -153438078 - MER5A DNA MER1_type 0 189 9 3247 186 83 11 chrX 23536879 23537519 -153436621 - MER76 LTR ERV -2 686 1 1204 89 0 6 chrX 23537934 23538091 -153436049 + L1PB1 LINE L1 5996 6151 0 322 241 0 0 chrX 23538579 23538658 -153435482 - L1MC4 LINE L1 -1350 6692 6614 204 125 0 0 chrX 23538659 23538691 -153435449 + (TA)n Simple_repeat Simple_repeat 1 32 0 248 169 200 15 chrX 23538691 23538756 -153435384 - L1ME LINE L1 -5982 88 12 2808 200 15 10 chrX 23538934 23539455 -153434685 - MLT1F LTR MaLR -12 530 7 4387 123 34 8 chrX 23539509 23539864 -153434276 - L1PB4 LINE L1 0 6156 5773 243 0 0 0 chrX 23539864 23539891 -153434249 + (TG)n Simple_repeat Simple_repeat 2 28 0 4387 123 34 8 chrX 23539891 23540204 -153433936 - L1PB4 LINE L1 -383 5773 5470 212 368 40 23 chrX 23540595 23540769 -153433371 - L2 LINE L2 -2103 1211 1035 1068 47 0 0 chrX 23540801 23540930 -153433210 + AluY SINE Alu 171 299 -12 2611 160 11 40 chrX 23541441 23541886 -153432254 + MSTB1 LTR MaLR 1 432 0 405 0 0 0 chrX 23541907 23541952 -153432188 + (TG)n Simple_repeat Simple_repeat 2 46 0 753 125 0 0 chrX 23542451 23542563 -153431577 - L1M2 LINE L1 -531 5769 5658 1774 183 0 10 chrX 23542579 23542880 -153431260 + AluJo SINE Alu 1 298 -14 756 295 39 50 chrX 23543125 23543586 -153430554 + L1ME LINE L1 18 473 -5597 4592 177 55 3 chrX 23543904 23544229 -153429911 - Charlie1a DNA MER1_type -1362 1399 1092 330 115 0 0 chrX 23544229 23544281 -153429859 + (CA)n Simple_repeat Simple_repeat 1 52 0 4592 177 55 3 chrX 23544281 23544827 -153429313 - Charlie1a DNA MER1_type -1669 1092 483 717 214 316 19 chrX 23544858 23545124 -153429016 - Charlie1a DNA MER1_type -1100 355 11 1267 80 6 0 chrX 23545441 23545603 -153428537 + L1PA10 LINE L1 6005 6167 -1 837 219 6 0 chrX 23545855 23546024 -153428116 - MER5B DNA MER1_type -8 170 1 284 247 26 39 chrX 23546793 23546870 -153427270 + MER5C DNA MER1_type 1 76 -248 1629 280 72 14 chrX 23547508 23547997 -153426143 - LTR33 LTR ERVL 0 521 5 356 188 0 14 chrX 23548017 23548086 -153426054 + HsTC2 DNA Tc2 1811 1878 -20 625 301 29 6 chrX 23548119 23548292 -153425848 - MIR3 SINE MIR -11 197 21 459 0 0 0 chrX 23548678 23548729 -153425411 + (CA)n Simple_repeat Simple_repeat 2 52 0 424 253 0 0 chrX 23548961 23549060 -153425080 - MER5A DNA MER1_type -83 106 8 282 175 35 0 chrX 23549171 23549228 -153424912 + MIR SINE MIR 63 121 -141 222 176 0 0 chrX 23549274 23549308 -153424832 + MIR SINE MIR 218 251 -11 2000 108 11 4 chrX 23549584 23549861 -153424279 + L1PA15 LINE L1 5883 6161 -4 260 102 20 0 chrX 23550129 23550178 -153423962 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 399 123 55 0 chrX 23550229 23550302 -153423838 + L1MB1 LINE L1 6092 6168 0 2675 139 85 4 chrX 23550302 23550779 -153423361 + L1MC2 LINE L1 5814 6333 -11 220 175 0 35 chrX 23552171 23552228 -153421912 + A-rich Low_complexity Low_complexity 5 59 0 369 375 31 5 chrX 23553124 23553318 -153420822 - MIR SINE MIR -50 212 15 257 284 88 54 chrX 23553449 23553597 -153420543 - MER5A DNA MER1_type 0 189 37 2482 50 0 17 chrX 23553961 23554258 -153419882 + AluY SINE Alu 1 292 -19 1353 158 22 0 chrX 23554806 23555034 -153419106 - L1MA6 LINE L1 0 6300 6068 328 274 27 0 chrX 23555078 23555190 -153418950 + MIR3 SINE MIR 87 202 -6 530 308 147 42 chrX 23555202 23555720 -153418420 - L2 LINE L2 -1 3312 2729 237 289 53 18 chrX 23555749 23555863 -153418277 + L1MC4 LINE L1 7922 8039 -3 1166 321 79 25 chrX 23555876 23556508 -153417632 - L2 LINE L2 -619 2695 2030 306 306 149 0 chrX 23556509 23556643 -153417497 - L1MC/D LINE L1 -2037 5771 5618 346 236 22 0 chrX 23556760 23556849 -153417291 + L1MC4a LINE L1 5759 5849 -1959 38 39 0 0 chrX 23557139 23557191 -153416949 + AT_rich Low_complexity Low_complexity 1 52 0 428 330 85 6 chrX 23557808 23557984 -153416156 + MIR3 SINE MIR 19 208 0 240 217 0 0 chrX 23558124 23558170 -153415970 + MLT1I LTR MaLR 98 143 -266 366 326 39 0 chrX 23558689 23558818 -153415322 - MER94 DNA DNA 0 134 1 870 340 21 21 chrX 23561180 23561515 -153412625 + LTR16C LTR ERVL 98 432 -59 180 322 111 0 chrX 23561539 23561629 -153412511 - L2 LINE L2 -34 3279 3180 959 209 94 44 chrX 23561740 23562181 -153411959 + MLT1J LTR MaLR 5 511 0 1999 110 55 14 chrX 23562671 23562962 -153411178 + AluSq SINE Alu 1 303 -10 207 237 165 10 chrX 23563130 23563227 -153410913 + L2 LINE L2 3201 3312 -1 353 227 282 9 chrX 23564602 23564712 -153409428 - MIR SINE MIR -40 222 83 2791 131 32 0 chrX 23564783 23565194 -153408946 + MSTA LTR MaLR 5 428 0 3628 154 21 24 chrX 23566273 23566986 -153407154 + L1MD2 LINE L1 5511 6221 -138 889 120 0 0 chrX 23566986 23567103 -153407037 + FLAM_C SINE Alu 1 117 -26 420 143 0 0 chrX 23567107 23567177 -153406963 + (TA)n Simple_repeat Simple_repeat 2 71 0 1080 180 0 0 chrX 23567177 23567344 -153406796 + FRAM SINE Alu 1 163 -13 656 204 7 0 chrX 23567344 23567486 -153406654 + L1MD1 LINE L1 6098 6240 -2 990 250 97 77 chrX 23568056 23568600 -153405540 + MLT1H1 LTR MaLR 1 555 0 276 290 114 38 chrX 23569024 23569155 -153404985 - L2 LINE L2 0 3272 3132 3524 134 14 45 chrX 23569763 23570589 -153403551 + L1MA8 LINE L1 4748 5612 -679 2819 10 0 0 chrX 23570589 23570897 -153403243 - AluY SINE Alu -3 308 1 3524 134 14 45 chrX 23570897 23571552 -153402588 + L1MA8 LINE L1 5612 6286 -5 343 328 40 33 chrX 23572031 23572360 -153401780 - LTR16C LTR ERVL -89 402 72 464 298 111 15 chrX 23573558 23573820 -153400320 - LTR16A1 LTR ERVL -8 449 163 272 299 106 69 chrX 23574266 23574671 -153399469 + MLT1K LTR MaLR 168 587 -1 545 333 63 0 chrX 23574673 23574910 -153399230 - MIR SINE MIR -1 261 10 21 36 0 0 chrX 23575367 23575395 -153398745 + AT_rich Low_complexity Low_complexity 1 28 0 697 278 34 19 chrX 23577685 23577890 -153396250 + MIR SINE MIR 4 211 -51 1960 165 114 7 chrX 23578397 23578866 -153395274 + MER68 LTR ERV1 1 562 0 863 151 14 0 chrX 23580287 23580421 -153393719 + Tigger7 DNA MER2_type 2 137 -596 473 155 21 10 chrX 23580421 23580518 -153393622 + MER4A LTR ERV1 1 98 -566 * 1752 138 3 21 chrX 23580514 23580870 -153393270 + MER4A LTR ERV1 257 664 0 1374 183 14 46 chrX 23580870 23581154 -153392986 + Tigger7 DNA MER2_type 133 407 -2080 384 188 12 0 chrX 23581171 23581251 -153392889 + Tigger7 DNA MER2_type 2411 2491 0 224 239 0 0 chrX 23581722 23581768 -153392372 - MER5A DNA MER1_type -97 92 47 2461 229 22 21 chrX 23581769 23582351 -153391789 + MER119 DNA MER1_type 1 583 0 181 306 20 0 chrX 23582351 23582400 -153391740 - MER5A DNA MER1_type -136 53 4 191 283 0 0 chrX 23582419 23582465 -153391675 - MIR SINE MIR -55 153 108 326 330 53 34 chrX 23583194 23583458 -153390682 - L2 LINE L2 -508 2806 2538 220 291 114 13 chrX 23584000 23584079 -153390061 + MIR SINE MIR 20 106 -156 300 200 0 0 chrX 23584405 23584470 -153389670 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 1309 241 36 87 chrX 23584959 23585637 -153388503 - L1ME3 LINE L1 -211 5951 5309 1056 171 78 0 chrX 23585637 23585830 -153388310 + MER6B DNA MER2_type 3 210 0 1309 241 36 87 chrX 23585830 23585851 -153388289 - L1ME3 LINE L1 -853 5309 5288 3709 170 20 5 chrX 23585904 23586644 -153387496 + L1 LINE L1 3528 4278 -1868 266 227 34 11 chrX 23586805 23586893 -153387247 - L1MC5 LINE L1 -42 7919 7830 3903 208 54 18 chrX 23586929 23588819 -153385321 - L1MB7 LINE L1 -11 6173 4212 396 299 71 63 chrX 23588819 23589206 -153384934 - L1MB7 LINE L1 -2263 3883 3497 247 349 0 0 chrX 23589364 23589447 -153384693 - MIR3 SINE MIR -8 200 118 2348 190 17 70 chrX 23593307 23593892 -153380248 + MLT2B3 LTR ERVL 1 554 0 1204 297 59 0 chrX 23594850 23595240 -153378900 + L2 LINE L2 2540 2952 -362 281 221 52 39 chrX 23595359 23595436 -153378704 + L2 LINE L2 2944 3021 -292 221 217 0 0 chrX 23595441 23595487 -153378653 + L2 LINE L2 3222 3267 -5 1528 141 188 16 chrX 23596167 23596486 -153377654 + THE1C LTR MaLR 1 374 -1 251 299 65 19 chrX 23597239 23597346 -153376794 + L2 LINE L2 3187 3298 -15 185 314 32 40 chrX 23598034 23598158 -153375982 - MIR SINE MIR -39 223 101 215 216 0 39 chrX 23598161 23598212 -153375928 + (CATA)n Simple_repeat Simple_repeat 1 49 0 2325 175 43 7 chrX 23599738 23600184 -153373956 + LTR32 LTR ERVL 10 471 0 783 229 11 0 chrX 23600701 23600876 -153373264 + MER5B DNA MER1_type 2 178 0 1603 200 30 0 chrX 23601062 23601392 -153372748 + MER58B DNA MER1_type 2 341 0 4569 149 95 28 chrX 23601403 23602274 -153371866 - MER21A LTR ERV1 -1 930 1 327 25 0 0 chrX 23602285 23602325 -153371815 + (CA)n Simple_repeat Simple_repeat 1 40 0 368 348 62 14 chrX 23603170 23603446 -153370694 + L2 LINE L2 2804 3092 -180 1520 285 42 11 chrX 23604111 23604584 -153369556 + LTR16C LTR ERVL 1 488 -3 782 258 43 85 chrX 23605878 23606049 -153368091 + LTR16A1 LTR ERVL 13 190 -267 680 150 83 33 chrX 23606049 23606229 -153367911 - MER53 DNA DNA 0 189 1 782 258 43 85 chrX 23606229 23606518 -153367622 + LTR16A1 LTR ERVL 190 454 -3 2514 72 0 0 chrX 23607540 23607846 -153366294 + AluY SINE Alu 1 306 -5 977 177 13 13 chrX 23608058 23608216 -153365924 - FRAM SINE Alu -21 155 1 30 0 0 0 chrX 23609004 23609034 -153365106 + AT_rich Low_complexity Low_complexity 1 30 0 428 300 17 0 chrX 23609935 23610055 -153364085 + L2 LINE L2 3190 3311 -2 284 260 78 0 chrX 23610938 23611015 -153363125 + LTR50 LTR ERVL 15 97 -698 195 341 70 31 chrX 23611043 23611156 -153362984 - L2 LINE L2 -2 3270 3150 300 53 0 0 chrX 23611156 23611194 -153362946 + (TG)n Simple_repeat Simple_repeat 2 39 0 195 341 70 31 chrX 23611194 23611209 -153362931 - L2 LINE L2 -122 3150 3137 715 192 0 23 chrX 23611551 23611681 -153362459 + FLAM_A SINE Alu 3 129 -4 419 236 36 0 chrX 23613365 23613475 -153360665 - MER20B DNA MER1_type -635 148 35 873 248 62 29 chrX 23614189 23614431 -153359709 - MIR SINE MIR 0 262 13 203 365 71 34 chrX 23614527 23614765 -153359375 - L2 LINE L2 -594 2720 2474 233 308 62 39 chrX 23614912 23615042 -153359098 + L2 LINE L2 3138 3270 -2 315 149 253 23 chrX 23615112 23615199 -153358941 + L2 LINE L2 3207 3313 0 356 277 34 20 chrX 23616312 23616460 -153357680 + MLT2C1 LTR ERVL 48 197 -200 * 1743 218 70 53 chrX 23616356 23616884 -153357256 + MLT1E2 LTR MaLR 88 624 -2 1449 177 17 100 chrX 23616986 23617172 -153356968 + MER58B DNA MER1_type 5 150 -2270 5498 109 26 4 chrX 23617172 23618421 -153355719 - L1PA16 LINE L1 -9 6157 4882 1449 177 17 100 chrX 23618421 23618584 -153355556 + MER58B DNA MER1_type 150 325 -16 589 311 47 0 chrX 23619086 23619279 -153354861 - MIR SINE MIR -6 256 55 2260 107 0 0 chrX 23619991 23620282 -153353858 - AluSx SINE Alu -21 291 1 404 283 10 0 chrX 23620286 23620385 -153353755 - L2 LINE L2 -11 3302 3203 672 270 75 15 chrX 23620417 23620750 -153353390 + L1MDa LINE L1 1648 2000 -4540 212 204 29 48 chrX 23621244 23621347 -153352793 + (TA)n Simple_repeat Simple_repeat 1 101 0 581 237 29 6 chrX 23621360 23621533 -153352607 + L1MDa LINE L1 2615 2791 -3749 * 874 329 8 0 chrX 23621531 23621902 -153352238 + L1ME3A LINE L1 5270 5643 -521 269 286 13 0 chrX 23621921 23621998 -153352142 + MER112 DNA MER1_type 8 85 -175 222 37 0 0 chrX 23622005 23622032 -153352108 + (CA)n Simple_repeat Simple_repeat 2 28 0 398 245 98 8 chrX 23622236 23622470 -153351670 + L1ME3A LINE L1 5686 5950 -214 2242 255 17 25 chrX 23622933 23623537 -153350603 - MER90 LTR ERV1 -15 599 1 2169 136 0 7 chrX 23623830 23624139 -153350001 + AluSx SINE Alu 1 307 -5 180 234 0 0 chrX 23625504 23625551 -153348589 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 597 238 88 19 chrX 23625553 23625713 -153348427 - L2 LINE L2 0 3313 3143 244 247 104 0 chrX 23625741 23625818 -153348322 - MLT1J2 LTR MaLR 0 450 366 222 37 0 0 chrX 23626377 23626404 -153347736 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1073 329 61 11 chrX 23626752 23627726 -153346414 + L1MDa LINE L1 1121 2142 -4579 379 318 5 14 chrX 23627720 23627937 -153346203 + L1MDa LINE L1 2867 3081 -3459 * 752 293 9 24 chrX 23627956 23628294 -153345846 + L1M4 LINE L1 4962 5294 -852 7205 123 10 35 chrX 23628502 23630273 -153343867 + L1MA3 LINE L1 4562 6299 -6 1587 158 55 4 chrX 23631083 23631356 -153342784 + AluJo SINE Alu 1 287 -25 300 70 0 0 chrX 23631444 23631487 -153342653 + (TC)n Simple_repeat Simple_repeat 2 44 0 240 35 0 0 chrX 23631487 23631516 -153342624 + (CA)n Simple_repeat Simple_repeat 1 29 0 293 143 0 0 chrX 23632482 23632524 -153341616 - 5S rRNA rRNA -79 42 1 658 295 45 5 chrX 23632592 23632792 -153341348 + MIR SINE MIR 26 233 -29 545 219 180 8 chrX 23632854 23632982 -153341158 + MER5A DNA MER1_type 10 159 -30 758 273 0 6 chrX 23633014 23633186 -153340954 - MER5B DNA MER1_type -7 171 1 264 280 68 45 chrX 23633663 23633795 -153340345 - L2 LINE L2 0 3313 3179 337 119 0 51 chrX 23633843 23633902 -153340238 + MLT1D LTR MaLR 450 505 0 316 357 35 0 chrX 23633955 23634098 -153340042 + L2 LINE L2 711 858 -2456 215 240 20 0 chrX 23634442 23634492 -153339648 + GA-rich Low_complexity Low_complexity 3 53 0 24 0 0 0 chrX 23634574 23634598 -153339542 + AT_rich Low_complexity Low_complexity 1 24 0 710 341 58 30 chrX 23634632 23635031 -153339109 + L2 LINE L2 2568 2977 -337 1302 263 68 11 chrX 23635052 23635433 -153338707 + MLT1I LTR MaLR 5 407 -2 185 343 0 69 chrX 23635456 23635558 -153338582 + L2 LINE L2 2988 3082 -231 637 248 41 89 chrX 23636052 23636298 -153337842 + MIR SINE MIR 3 236 -26 1186 276 90 28 chrX 23636315 23636772 -153337368 + MLT1J LTR MaLR 12 496 -15 2101 121 53 36 chrX 23637271 23637627 -153336513 + THE1B LTR MaLR 1 362 -2 11519 87 20 8 chrX 23637629 23637898 -153336242 + THE1B-int LTR MaLR 1 265 -1315 2418 81 0 0 chrX 23637898 23638195 -153335945 - AluY SINE Alu -14 297 1 11519 87 20 8 chrX 23638195 23639487 -153334653 + THE1B-int LTR MaLR 265 1580 0 2487 106 28 14 chrX 23639487 23639846 -153334294 + THE1B LTR MaLR 1 364 0 428 293 95 14 chrX 23639866 23640013 -153334127 - MIR SINE MIR -84 178 20 216 0 0 0 chrX 23640614 23640638 -153333502 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 448 290 69 0 chrX 23640933 23641078 -153333062 + LTR16C LTR ERVL 337 491 0 377 219 124 39 chrX 23642240 23642391 -153331749 + L1ME4a LINE L1 5794 5973 -148 441 95 0 0 chrX 23642391 23642454 -153331686 + (TA)n Simple_repeat Simple_repeat 2 64 0 377 219 124 39 chrX 23642454 23642535 -153331605 + L1ME4a LINE L1 5973 6046 -75 323 236 11 71 chrX 23642687 23642869 -153331271 + L1ME4a LINE L1 5930 6100 -21 372 164 0 0 chrX 23643570 23643625 -153330515 + Tigger2 DNA MER2_type 6 60 -2658 871 240 6 0 chrX 23643668 23643839 -153330301 - MER8 DNA MER2_type -58 181 10 228 241 35 14 chrX 23643887 23644028 -153330112 + (TA)n Simple_repeat Simple_repeat 1 144 0 846 174 0 0 chrX 23644096 23644268 -153329872 + L1MA4 LINE L1 6127 6298 -2 5436 93 25 1 chrX 23645123 23645910 -153328230 + L1MA1 LINE L1 5497 6302 0 2369 71 3 0 chrX 23645912 23646206 -153327934 - AluY SINE Alu -16 295 1 33 56 0 0 chrX 23646212 23646266 -153327874 + AT_rich Low_complexity Low_complexity 1 54 0 1756 225 121 5 chrX 23647850 23648263 -153325877 + MLT2B1 LTR ERVL 1 461 -59 432 0 0 0 chrX 23648263 23648311 -153325829 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 1212 217 81 4 chrX 23648684 23648956 -153325184 - LTR16A1 LTR ERVL 0 457 165 673 325 41 4 chrX 23649164 23649410 -153324730 - MIR SINE MIR -1 261 7 22 35 0 0 chrX 23649759 23649788 -153324352 + AT_rich Low_complexity Low_complexity 1 29 0 2313 83 0 0 chrX 23649788 23650076 -153324064 - AluSx SINE Alu -24 288 1 2295 84 0 0 chrX 23650198 23650485 -153323655 - AluSc SINE Alu -22 287 1 1868 38 0 0 chrX 23650493 23650705 -153323435 - AluY SINE Alu -14 297 86 1044 223 73 0 chrX 23651621 23651827 -153322313 - MIR SINE MIR 0 262 42 1722 148 28 24 chrX 23653075 23653366 -153320774 + AluJo SINE Alu 1 292 -20 224 230 23 23 chrX 23653400 23653487 -153320653 + (TA)n Simple_repeat Simple_repeat 1 87 0 9063 125 58 11 chrX 23654888 23657151 -153316989 + MER41A-int LTR ERV1 1136 3757 -2189 425 38 0 0 chrX 23657133 23657186 -153316954 + MER41A-int LTR ERV1 4324 4376 -1887 * 11705 101 5 11 chrX 23657189 23657976 -153316164 + MER41A-int LTR ERV1 4293 5083 -863 2184 117 7 7 chrX 23657976 23658284 -153315856 + AluSq SINE Alu 1 308 -5 11705 101 5 11 chrX 23658284 23659158 -153314982 + MER41A-int LTR ERV1 5083 5944 -2 3941 88 32 0 chrX 23659158 23659695 -153314445 + MER41A LTR ERV1 1 554 0 678 231 138 0 chrX 23661369 23661529 -153312611 - MIR SINE MIR -69 193 12 2410 96 13 40 chrX 23661612 23661986 -153312154 - THE1B LTR MaLR 0 364 1 367 175 113 10 chrX 23662001 23662098 -153312042 + MER103 DNA DNA 12 118 -48 633 62 0 0 chrX 23662119 23662199 -153311941 + MADE1 DNA Mariner 1 80 0 270 324 166 32 chrX 23662993 23663240 -153310900 + L2 LINE L2 2698 2977 -337 2745 156 41 6 chrX 23663316 23663802 -153310338 + MLT1D LTR MaLR 1 503 -2 1125 233 88 0 chrX 23663868 23664164 -153309976 + MER5C DNA MER1_type 1 322 -2 816 321 91 19 chrX 23664164 23664528 -153309612 - MLT1I LTR MaLR -14 395 6 347 294 71 16 chrX 23664582 23664708 -153309432 + L2 LINE L2 3140 3272 0 482 221 27 87 chrX 23665182 23665331 -153308809 + MIR SINE MIR 110 249 -13 245 274 11 21 chrX 23665548 23665643 -153308497 + L1ME4a LINE L1 5835 5928 -193 414 100 0 0 chrX 23665649 23665709 -153308431 + (TA)n Simple_repeat Simple_repeat 2 61 0 1597 164 3 21 chrX 23666165 23666491 -153307649 + AluSx SINE Alu 1 321 0 304 314 96 26 chrX 23667134 23667356 -153306784 - L2 LINE L2 -646 2668 2431 420 305 17 8 chrX 23667356 23667474 -153306666 - MER5A DNA MER1_type 0 189 71 209 365 56 60 chrX 23667679 23667836 -153306304 - L2 LINE L2 -1052 2262 2105 4706 71 16 61 chrX 23667836 23668527 -153305613 + PABL_A LTR ERV1 1 660 0 209 365 56 60 chrX 23668527 23668621 -153305519 - L2 LINE L2 -1209 2105 2012 300 269 69 62 chrX 23668642 23668787 -153305353 - ERVL LTR ERVL -4545 1219 1074 207 0 0 0 chrX 23669003 23669026 -153305114 + (CAA)n Simple_repeat Simple_repeat 2 24 0 856 235 67 4 chrX 23669784 23670052 -153304088 - MER58D DNA MER1_type -1 385 101 188 286 89 0 chrX 23670090 23670146 -153303994 + MER5A DNA MER1_type 128 188 -1 618 148 14 49 chrX 23670326 23670468 -153303672 + L1MB7 LINE L1 6048 6184 0 184 286 78 13 chrX 23670470 23670547 -153303593 + MER5B DNA MER1_type 91 172 -6 628 313 29 10 chrX 23670552 23670760 -153303380 + MIR SINE MIR 20 231 -31 876 247 30 49 chrX 23670961 23671051 -153303089 - MIR SINE MIR 0 262 172 3696 101 35 29 chrX 23671051 23671647 -153302493 + MER4A LTR ERV1 1 600 0 876 247 30 49 chrX 23671647 23671823 -153302317 - MIR SINE MIR -90 172 1 2507 44 0 10 chrX 23674452 23674750 -153299390 - AluY SINE Alu -16 295 1 543 262 120 71 chrX 23675041 23675266 -153298874 + MIR SINE MIR 6 241 -21 1028 257 12 4 chrX 23675850 23676095 -153298045 - MIR SINE MIR -11 251 5 325 362 104 24 chrX 23676509 23677095 -153297045 - L2 LINE L2 -750 2564 1932 446 272 121 0 chrX 23677100 23677273 -153296867 + L2 LINE L2 3120 3313 0 696 269 94 24 chrX 23679859 23680071 -153294069 - MIR SINE MIR -30 232 6 631 267 58 53 chrX 23680422 23680853 -153293287 - L1ME LINE L1 -5082 988 556 4778 109 16 3 chrX 23681025 23681770 -153292370 - L1MA2 LINE L1 -3 6301 5547 2316 149 1 2 chrX 23681771 23682369 -153291771 + L1MA3 LINE L1 5015 5612 -690 * 3151 23 2 0 chrX 23682360 23682753 -153291387 - L1PA4 LINE L1 -1492 4654 4261 7455 30 1 1 chrX 23682753 23684228 -153289912 + L1PA4 LINE L1 4675 6148 -7 4252 101 21 48 chrX 23684240 23684921 -153289219 + L1MA3 LINE L1 5593 6254 -51 4668 124 28 27 chrX 23684921 23685704 -153288436 + LTR1 LTR ERV1 1 784 -1 4252 101 21 48 chrX 23685704 23685747 -153288393 + L1MA3 LINE L1 6254 6297 -8 252 270 24 3 chrX 23686221 23686308 -153287832 + MIR SINE MIR 62 154 -54 187 270 63 16 chrX 23686387 23686450 -153287690 - MIR3 SINE MIR -27 181 116 298 353 17 0 chrX 23686840 23686959 -153287181 + MER5C DNA MER1_type 1 121 -203 6795 211 45 9 chrX 23687315 23688927 -153285213 - MER52A LTR ERV1 0 1755 9 434 298 117 24 chrX 23688952 23689200 -153284940 - Charlie8 DNA MER1_type -2143 274 4 401 155 0 21 chrX 23691320 23691417 -153282723 + CT-rich Low_complexity Low_complexity 2 96 0 391 256 66 30 chrX 23692274 23692614 -153281526 + LTR37A LTR ERV1 3 423 -3 180 0 0 0 chrX 23692842 23692862 -153281278 + (TTG)n Simple_repeat Simple_repeat 2 21 0 288 268 36 27 chrX 23693090 23693202 -153280938 + MER31-int LTR ERV1 1029 1141 -3795 381 262 44 63 chrX 23693470 23693727 -153280413 - MIR SINE MIR -9 253 5 555 206 139 28 chrX 23695555 23695899 -153278241 + LTR37A LTR ERV1 10 423 -3 1928 80 42 42 chrX 23695928 23696214 -153277926 + AluY SINE Alu 1 286 -25 469 256 156 43 chrX 23696432 23696643 -153277497 - MLT1D-int LTR MaLR -266 1105 871 862 219 11 0 chrX 23696719 23696902 -153277238 - MLT1D-int LTR MaLR -488 883 699 2632 215 22 36 chrX 23696975 23697641 -153276499 - MLT1D-int LTR MaLR -711 660 4 1650 244 56 10 chrX 23697644 23698127 -153276013 - MLT1D LTR MaLR 0 505 1 431 178 10 30 chrX 23698127 23698228 -153275912 - LTR16C LTR ERVL -67 424 326 382 337 21 11 chrX 23698259 23698446 -153275694 - LTR16C LTR ERVL -302 189 1 297 391 0 27 chrX 23698539 23698649 -153275491 - L2 LINE L2 -43 3229 3123 513 178 108 45 chrX 23698693 23698850 -153275290 - MER20 DNA MER1_type 0 219 53 958 35 0 0 chrX 23699115 23699229 -153274911 + L1PA5 LINE L1 6038 6151 -3 1782 47 21 0 chrX 23699229 23699462 -153274678 + Harlequin LTR ERV1 6659 6896 0 1460 187 76 38 chrX 23699483 23699879 -153274261 + LTR2B LTR ERV1 34 444 -46 9977 223 44 29 chrX 23699892 23703399 -153270741 - L1M4b LINE L1 -960 5997 2476 5067 253 53 21 chrX 23703670 23704503 -153269637 - L1M4b LINE L1 -5055 1800 995 1929 143 34 3 chrX 23704503 23704797 -153269343 + AluJb SINE Alu 1 303 -9 5067 253 53 21 chrX 23704797 23705634 -153268506 - L1M4b LINE L1 -5860 995 96 2287 39 21 0 chrX 23706004 23706288 -153267852 + L1PA5 LINE L1 5865 6154 0 2881 90 47 9 chrX 23706592 23707036 -153267104 + MER4C LTR ERV1 1 461 -4 29 70 0 0 chrX 23707109 23707166 -153266974 + AT_rich Low_complexity Low_complexity 1 57 0 257 250 103 15 chrX 23707374 23707510 -153266630 + L1ME4a LINE L1 5974 6121 0 235 306 108 101 chrX 23707682 23708055 -153266085 + L2 LINE L2 2319 2688 -584 1106 220 155 19 chrX 23708055 23708352 -153265788 + LTR52 LTR ERVL 1 359 -62 423 0 0 0 chrX 23708352 23708399 -153265741 + (TG)n Simple_repeat Simple_repeat 1 47 0 1106 220 155 19 chrX 23708399 23708469 -153265671 + LTR52 LTR ERVL 359 418 -3 235 306 108 101 chrX 23708469 23709034 -153265106 + L2 LINE L2 2688 3272 0 1723 125 66 42 chrX 23709122 23709411 -153264729 - AluSx SINE Alu -16 296 1 214 200 0 0 chrX 23709988 23710028 -153264112 - L2 LINE L2 0 3313 3274 183 308 47 87 chrX 23710248 23710420 -153263720 + L3 LINE CR1 807 971 -606 237 299 14 89 chrX 23710489 23710703 -153263437 + L2 LINE L2 1203 1400 -1914 1104 289 18 6 chrX 23710793 23711132 -153263008 + LTR16C LTR ERVL 149 491 0 487 175 70 0 chrX 23711363 23711477 -153262663 - L1MC4 LINE L1 -1 8041 7920 1875 197 29 2 chrX 23711504 23711916 -153262224 - L1MB5 LINE L1 -9 6165 5743 1445 156 11 0 chrX 23711918 23712181 -153261959 - L1MA9 LINE L1 -186 6126 5861 1719 99 0 36 chrX 23712210 23712462 -153261678 + AluSx SINE Alu 54 296 -16 467 243 86 33 chrX 23712532 23712742 -153261398 - L1M4 LINE L1 -6300 242 22 5635 71 12 3 chrX 23712774 23713533 -153260607 + MER4E LTR ERV1 1 766 0 6086 111 91 25 chrX 23713533 23714545 -153259595 + MER4E-int LTR ERV1 1 1093 -5665 321 26 0 0 chrX 23714545 23714583 -153259557 + (TTG)n Simple_repeat Simple_repeat 2 39 0 6086 111 91 25 chrX 23714583 23714665 -153259475 + MER4E-int LTR ERV1 1093 1168 -5590 7930 117 78 34 chrX 23714676 23716166 -153257974 + MER4E-int LTR ERV1 1444 2531 -4227 1968 125 7 3 chrX 23716166 23716455 -153257685 + AluSx SINE Alu 1 290 -22 7930 117 78 34 chrX 23716455 23717045 -153257095 + MER4E-int LTR ERV1 2531 3094 -3664 3740 150 63 7 chrX 23717043 23717658 -153256482 + MER4E-int LTR ERV1 3436 4085 -2673 * 1170 118 67 15 chrX 23717656 23717851 -153256289 + MER4E-int LTR ERV1 4448 4652 -2106 * 8304 217 72 56 chrX 23717852 23718202 -153255938 + L1MB1 LINE L1 806 1149 -5233 435 216 0 0 chrX 23718202 23718276 -153255864 + AluJ/FLAM SINE Alu 4 77 -235 8304 217 72 56 chrX 23718276 23718748 -153255392 + L1MB1 LINE L1 1149 1612 -4770 2252 112 0 0 chrX 23718748 23719052 -153255088 + AluSx SINE Alu 1 304 -8 8304 217 72 56 chrX 23719052 23719364 -153254776 + L1MB1 LINE L1 1612 1918 -4464 2510 84 0 0 chrX 23719364 23719674 -153254466 + AluSg SINE Alu 1 310 0 8304 217 72 56 chrX 23719674 23721725 -153252415 + L1MB1 LINE L1 1918 3936 -2446 2091 187 0 3 chrX 23721725 23722088 -153252052 - MLT1A1 LTR MaLR -3 362 1 8304 217 72 56 chrX 23722088 23722513 -153251627 + L1MB1 LINE L1 3936 4353 -2029 2183 105 3 13 chrX 23722513 23722826 -153251314 + AluSg SINE Alu 1 310 0 8304 217 72 56 chrX 23722826 23723120 -153251020 + L1MB1 LINE L1 4353 4801 -1581 593 194 36 61 chrX 23723120 23723285 -153250855 + MSTD LTR MaLR 1 161 -213 6099 34 1 1 chrX 23723295 23724023 -153250117 + L1PA5 LINE L1 5424 6151 -3 917 212 28 4 chrX 23724699 23724904 -153249236 + MSTD LTR MaLR 197 390 -6 5829 241 60 62 chrX 23724913 23725016 -153249124 + MSTD-int LTR MaLR 2 104 -1631 2226 44 44 4 chrX 23725016 23725333 -153248807 + AluY SINE Alu 1 328 0 5829 241 60 62 chrX 23725333 23726319 -153247821 + MSTD-int LTR MaLR 104 1090 -645 3294 159 19 3 chrX 23726319 23726890 -153247250 + LTR22 LTR ERVK 1 580 0 5829 241 60 62 chrX 23726890 23727535 -153246605 + MSTD-int LTR MaLR 1090 1735 0 839 210 111 72 chrX 23727535 23727869 -153246271 + MSTC LTR MaLR 1 383 -45 2220 119 0 0 chrX 23727869 23728171 -153245969 - AluSx SINE Alu -8 304 3 839 210 111 72 chrX 23728171 23728217 -153245923 + MSTC LTR MaLR 383 426 -2 4966 176 24 5 chrX 23728218 23729818 -153244322 + L1MB1 LINE L1 4774 6404 0 21 95 0 0 chrX 23730856 23730919 -153243221 + AT_rich Low_complexity Low_complexity 1 63 0 222 366 101 39 chrX 23731998 23732353 -153241787 + L2 LINE L2 1519 1895 -1419 479 344 60 51 chrX 23732354 23732706 -153241434 + MLT1K LTR MaLR 183 537 -51 353 295 119 81 chrX 23732709 23733031 -153241109 + L2 LINE L2 2077 2434 -880 402 190 36 73 chrX 23733031 23733168 -153240972 - MER94 DNA DNA -1 133 2 353 295 119 81 chrX 23733168 23733439 -153240701 + L2 LINE L2 2434 2693 -621 394 248 16 25 chrX 23733515 23733636 -153240504 + MLT1H LTR MaLR 40 159 -390 293 273 0 0 chrX 23733849 23733937 -153240203 + MLT1H LTR MaLR 462 549 0 604 336 74 44 chrX 23733942 23734439 -153239701 + L2 LINE L2 2396 2907 -407 266 262 115 107 chrX 23734433 23734685 -153239455 + L2 LINE L2 3019 3272 0 * 586 287 21 50 chrX 23736704 23736983 -153237157 - MLT1L LTR MaLR -123 492 222 1797 98 94 7 chrX 23737199 23737506 -153236634 + L1MA8 LINE L1 5679 6012 -279 287 137 0 0 chrX 23737516 23737567 -153236573 + L1MA9 LINE L1 6223 6273 -39 36 77 0 0 chrX 23737621 23737699 -153236441 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chrX 23737717 23737739 -153236401 + AT_rich Low_complexity Low_complexity 1 22 0 384 303 118 7 chrX 23738235 23738387 -153235753 - MIR SINE MIR -70 192 24 1972 107 66 38 chrX 23738484 23738849 -153235291 - THE1C LTR MaLR 0 375 1 531 252 8 0 chrX 23741167 23741290 -153232850 - LTR16C LTR ERVL -4 487 364 295 343 37 0 chrX 23742269 23742377 -153231763 - MIR SINE MIR -57 151 40 1611 201 30 54 chrX 23742389 23742818 -153231322 + MER31B LTR ERV1 48 466 0 261 130 22 0 chrX 23744336 23744382 -153229758 + MER5A DNA MER1_type 1 47 -142 401 297 145 65 chrX 23744384 23744660 -153229480 - LTR16C LTR ERVL -191 300 3 246 62 0 0 chrX 23745467 23745499 -153228641 + (TA)n Simple_repeat Simple_repeat 1 32 0 714 54 0 0 chrX 23745602 23745694 -153228446 - AluY SINE Alu -13 298 207 477 293 60 67 chrX 23745741 23745964 -153228176 + MER102b DNA MER1_type 27 249 -1179 2163 111 0 16 chrX 23745964 23746271 -153227869 + AluSx SINE Alu 1 302 -10 477 293 60 67 chrX 23746271 23746361 -153227779 + MER102b DNA MER1_type 249 338 -3 2356 89 6 10 chrX 23746811 23747124 -153227016 - AluSp SINE Alu -1 312 1 216 67 0 0 chrX 23747464 23747494 -153226646 + (GA)n Simple_repeat Simple_repeat 1 30 0 1998 213 45 19 chrX 23748381 23748845 -153225295 - MLT1E2 LTR MaLR 0 626 151 2149 97 7 27 chrX 23749035 23749335 -153224805 - AluSx SINE Alu -13 299 6 446 147 0 0 chrX 23749803 23749871 -153224269 + MLT1H1 LTR MaLR 1 68 -527 6962 217 90 23 chrX 23749871 23751166 -153222974 - L1M4 LINE L1 -3654 2990 1783 2267 110 3 0 chrX 23751166 23751474 -153222666 + AluSx SINE Alu 1 309 -3 6962 217 90 23 chrX 23751474 23752959 -153221181 - L1M4 LINE L1 -4861 1783 10 906 271 82 38 chrX 23752959 23753458 -153220682 + MLT1H1 LTR MaLR 43 553 -2 29 47 0 0 chrX 23753994 23754037 -153220103 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chrX 23754333 23754356 -153219784 + AT_rich Low_complexity Low_complexity 1 23 0 645 305 147 0 chrX 23754398 23754670 -153219470 - L2 LINE L2 0 3313 3002 833 264 111 11 chrX 23754998 23755278 -153218862 + MLT1H LTR MaLR 6 313 -236 1495 273 65 12 chrX 23755460 23755892 -153218248 - MLT1J LTR MaLR -49 462 8 798 250 66 9 chrX 23757530 23757742 -153216398 - MER58A DNA MER1_type 0 224 1 261 276 0 0 chrX 23757840 23757916 -153216224 + MER69 DNA AcHobo 2449 2524 -2 2033 109 7 18 chrX 23758295 23758606 -153215534 - AluSc SINE Alu 0 308 1 523 270 54 20 chrX 23759576 23759724 -153214416 - L2 LINE L2 -2 3311 3159 5442 131 32 44 chrX 23759729 23759906 -153214234 + L1MA4 LINE L1 5255 5433 -867 4064 88 2 15 chrX 23759906 23760490 -153213650 + L1PB1 LINE L1 5572 6151 0 5442 131 32 44 chrX 23760490 23761347 -153212793 + L1MA4 LINE L1 5433 6276 -24 243 233 188 15 chrX 23761378 23761511 -153212629 - L2 LINE L2 -131 3182 3027 569 304 69 10 chrX 23761665 23761869 -153212271 - MIR SINE MIR -22 240 25 213 154 0 0 chrX 23762516 23762555 -153211585 + (TA)n Simple_repeat Simple_repeat 2 40 0 215 279 49 0 chrX 23764439 23764500 -153209640 - MIR SINE MIR -148 114 51 708 261 53 0 chrX 23764804 23765011 -153209129 + MIR SINE MIR 1 218 -44 197 262 103 65 chrX 23765287 23765394 -153208746 - L2 LINE L2 -23 3290 3180 236 333 19 9 chrX 23767110 23767129 -153207011 + LTR67 LTR ERVL 95 112 -445 240 59 0 0 chrX 23767129 23767163 -153206977 + (CA)n Simple_repeat Simple_repeat 2 35 0 236 333 19 9 chrX 23767163 23767248 -153206892 + LTR67 LTR ERVL 112 200 -357 277 287 35 43 chrX 23767375 23767490 -153206650 + LTR67 LTR ERVL 359 472 -85 764 268 93 56 chrX 23767524 23768006 -153206134 - MLT1H LTR MaLR -28 521 22 228 291 47 0 chrX 23768016 23768102 -153206038 + LTR67 LTR ERVL 468 557 0 3424 141 110 10 chrX 23768701 23769410 -153204730 + L1MC3 LINE L1 6998 7777 -8 198 136 0 114 chrX 23770049 23770093 -153204047 + MIR SINE MIR 224 262 0 1863 194 48 19 chrX 23770302 23770776 -153203364 + Charlie4a DNA MER1_type 18 505 -3 716 278 67 28 chrX 23771670 23772030 -153202110 - L1ME2 LINE L1 -308 5856 5483 452 291 54 79 chrX 23772164 23772480 -153201660 - LTR16C LTR ERVL -26 465 158 204 219 170 24 chrX 23772653 23772734 -153201406 - MIR SINE MIR -85 123 44 854 262 44 82 chrX 23772870 23773282 -153200858 - MLT1J LTR MaLR -115 396 1 473 305 63 0 chrX 23773283 23773457 -153200683 + MIR SINE MIR 78 262 0 211 197 0 30 chrX 23774266 23774332 -153199808 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 36 0 0 chrX 23774482 23774510 -153199630 + AT_rich Low_complexity Low_complexity 1 28 0 2161 115 3 20 chrX 23774828 23775132 -153199008 + AluSx SINE Alu 1 299 -13 974 205 5 5 chrX 23775234 23775419 -153198721 + MER5A DNA MER1_type 4 188 -1 540 253 180 13 chrX 23775440 23775590 -153198550 + MER5A DNA MER1_type 9 183 -6 1978 166 43 8 chrX 23775618 23775991 -153198149 + MLT1B LTR MaLR 5 390 0 636 233 5 109 chrX 23775991 23776125 -153198015 - MER5B DNA MER1_type -5 173 63 2348 109 0 0 chrX 23776125 23776436 -153197704 + AluSq SINE Alu 1 311 -2 636 233 5 109 chrX 23776436 23776494 -153197646 - MER5B DNA MER1_type -115 63 1 1650 85 31 0 chrX 23776505 23776728 -153197412 + MER30 DNA MER1_type 1 230 0 253 283 11 43 chrX 23777619 23777711 -153196429 + LTR67 LTR ERVL 85 173 -384 * 254 310 15 36 chrX 23777652 23777877 -153196263 + MLT1J LTR MaLR 110 392 -223 1132 183 0 5 chrX 23777955 23778141 -153195999 - AluJo SINE Alu -2 310 126 234 146 0 0 chrX 23778148 23778189 -153195951 + MLT1L LTR MaLR 558 598 -17 35 0 0 0 chrX 23778189 23778224 -153195916 + AT_rich Low_complexity Low_complexity 1 35 0 181 374 81 45 chrX 23778439 23778637 -153195503 - L2 LINE L2 -48 3224 3020 189 74 0 0 chrX 23781920 23781947 -153192193 + (TG)n Simple_repeat Simple_repeat 1 27 0 345 317 21 111 chrX 23782011 23782345 -153191795 - L2 LINE L2 0 3272 2969 6581 25 0 2 chrX 23782389 23783195 -153190945 - L1PA4 LINE L1 -3 6152 5349 541 228 35 0 chrX 23783283 23783397 -153190743 - MLT1K LTR MaLR -331 257 140 195 42 0 0 chrX 23783407 23783431 -153190709 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chrX 23783655 23783676 -153190464 + AT_rich Low_complexity Low_complexity 1 21 0 625 242 5 53 chrX 23784175 23784365 -153189775 + L2 LINE L2 2182 2362 -952 935 116 7 0 chrX 23784372 23784519 -153189621 - L1MB7 LINE L1 -238 5946 5799 190 250 62 62 chrX 23784995 23785059 -153189081 - L2 LINE L2 -4 3309 3246 593 236 8 0 chrX 23785263 23785386 -153188754 + MLT1K LTR MaLR 140 263 -325 283 278 22 22 chrX 23785508 23785598 -153188542 + L2 LINE L2 2969 3058 -214 797 244 75 26 chrX 23785602 23785868 -153188272 + L2 LINE L2 3021 3299 -14 336 257 27 0 chrX 23785879 23785953 -153188187 - L2 LINE L2 -30 3283 3208 258 56 0 0 chrX 23785957 23785993 -153188147 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 255 10 31 chrX 23786614 23786712 -153187428 + MIR SINE MIR 91 186 -76 753 160 19 51 chrX 23786728 23786884 -153187256 + FRAM SINE Alu 1 151 -25 22 35 0 0 chrX 23786888 23786917 -153187223 + AT_rich Low_complexity Low_complexity 1 29 0 619 304 103 18 chrX 23787158 23787382 -153186758 + MIR SINE MIR 20 262 0 270 212 0 15 chrX 23787521 23787587 -153186553 - LTR67 LTR ERVL 0 557 493 1945 142 35 41 chrX 23787750 23787989 -153186151 + MLT1A1 LTR MaLR 1 239 -126 2049 115 7 10 chrX 23787989 23788284 -153185856 - AluSq SINE Alu -19 294 1 1945 142 35 41 chrX 23788284 23788411 -153185729 + MLT1A1 LTR MaLR 239 365 0 889 251 20 85 chrX 23788559 23788602 -153185538 + L2 LINE L2 2806 2850 -463 2271 112 0 0 chrX 23788602 23788897 -153185243 - AluSg SINE Alu -15 295 1 889 251 20 85 chrX 23788897 23789210 -153184930 + L2 LINE L2 2850 3136 -177 1087 253 42 73 chrX 23789210 23789775 -153184365 - MLT1H LTR MaLR -1 548 1 889 251 20 85 chrX 23789775 23789819 -153184321 + L2 LINE L2 3136 3181 -132 633 167 28 7 chrX 23790546 23790690 -153183450 + GA-rich Low_complexity Low_complexity 2 148 0 557 279 29 0 chrX 23790725 23790865 -153183275 - MIR SINE MIR -72 190 47 2118 169 30 62 chrX 23790978 23791506 -153182634 - MLT2B1 LTR ERVL -7 513 3 1774 211 77 43 chrX 23791662 23792245 -153181895 + L1ME3 LINE L1 5518 6120 -42 338 143 69 12 chrX 23792258 23792592 -153181548 + (TA)n Simple_repeat Simple_repeat 1 353 0 202 82 47 47 chrX 23792615 23792700 -153181440 + (TA)n Simple_repeat Simple_repeat 2 86 0 208 111 41 76 chrX 23792721 23792893 -153181247 + (TA)n Simple_repeat Simple_repeat 1 166 0 379 136 26 84 chrX 23792911 23793238 -153180902 + (TA)n Simple_repeat Simple_repeat 1 308 0 608 201 11 4 chrX 23793251 23793533 -153180607 + (TA)n Simple_repeat Simple_repeat 1 284 0 324 204 11 43 chrX 23793534 23793627 -153180513 - L1MC4 LINE L1 -1338 6704 6615 35 0 0 0 chrX 23793723 23793758 -153180382 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chrX 23794408 23794433 -153179707 + (CA)n Simple_repeat Simple_repeat 1 25 0 3608 155 99 36 chrX 23794452 23795081 -153179059 - L1MB8 LINE L1 -9 6169 5475 738 186 16 0 chrX 23795081 23795210 -153178930 - FLAM_C SINE Alu -2 131 1 3608 155 99 36 chrX 23795210 23795395 -153178745 - L1MB8 LINE L1 -703 5475 5303 5068 77 3 1 chrX 23795511 23796170 -153177970 - PABL_A LTR ERV1 0 660 1 1412 53 0 0 chrX 23797151 23797320 -153176820 - AluY SINE Alu -12 299 131 2492 66 0 0 chrX 23797321 23797624 -153176516 - AluY SINE Alu -8 303 1 439 221 0 0 chrX 23797886 23797981 -153176159 + MER41C-int LTR ERV1 422 516 -7240 18683 148 53 23 chrX 23798085 23801620 -153172520 + MER41C-int LTR ERV1 381 4020 -1926 4392 103 81 43 chrX 23801627 23802445 -153171695 + MER41C-int LTR ERV1 4638 5486 -460 927 110 7 21 chrX 23802440 23802585 -153171555 + MER41C-int LTR ERV1 5728 5870 -76 * 715 175 164 23 chrX 23802462 23802633 -153171507 + HERVK14 LTR ERVK 5565 5759 -186 * 2713 162 14 73 chrX 23802634 23803100 -153171040 + MER41C LTR ERV1 2 427 -127 2292 97 7 7 chrX 23803100 23803410 -153170730 - AluSx SINE Alu -2 310 1 2713 162 14 73 chrX 23803410 23803531 -153170609 + MER41C LTR ERV1 427 554 0 23 0 0 0 chrX 23804408 23804431 -153169709 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chrX 23805345 23805375 -153168765 + AT_rich Low_complexity Low_complexity 1 30 0 568 248 65 0 chrX 23805660 23805813 -153168327 + MLT1J LTR MaLR 10 172 -339 1472 192 86 28 chrX 23805819 23806030 -153168110 + MER63B DNA MER1_type 1 198 -864 14635 124 34 22 chrX 23806030 23808418 -153165722 - Tigger1 DNA MER2_type 0 2418 1 1472 192 86 28 chrX 23808418 23808602 -153165538 + MER63B DNA MER1_type 198 419 -17 216 200 0 0 chrX 23808801 23808846 -153165294 + T-rich Low_complexity Low_complexity 2 46 0 510 129 0 0 chrX 23808846 23808931 -153165209 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 774 288 57 50 chrX 23808931 23809334 -153164806 + MLT1J LTR MaLR 32 437 -74 1036 97 0 0 chrX 23809337 23809471 -153164669 + AluY SINE Alu 1 134 -177 2375 67 0 3 chrX 23809471 23809771 -153164369 + AluY SINE Alu 1 299 -12 4128 228 23 34 chrX 23810100 23811419 -153162721 - L1MCb LINE L1 -4850 1195 1 2186 114 3 16 chrX 23811530 23811847 -153162293 + AluSq SINE Alu 1 313 0 1265 261 99 21 chrX 23813711 23814144 -153159996 + MLT1H LTR MaLR 81 547 -2 2162 100 0 45 chrX 23815094 23815264 -153158876 - AluSg SINE Alu -9 301 125 5335 24 7 0 chrX 23815264 23815884 -153158256 - L1PA5 LINE L1 -2 6152 5529 899 47 0 0 chrX 23815884 23815991 -153158149 - U6 snRNA snRNA 0 107 1 2162 100 0 45 chrX 23815991 23816130 -153158010 - AluSg SINE Alu -183 127 5 390 355 112 25 chrX 23816473 23816989 -153157151 + L2 LINE L2 1441 2001 -1313 447 163 38 123 chrX 23816995 23817153 -153156987 - MLT1H LTR MaLR -3 548 408 258 105 0 0 chrX 23817410 23817448 -153156692 + (TG)n Simple_repeat Simple_repeat 1 38 0 185 319 234 7 chrX 23817488 23817629 -153156511 + L2 LINE L2 2078 2250 -1064 188 349 82 14 chrX 23817635 23817781 -153156359 + L2 LINE L2 2866 3021 -251 204 299 52 0 chrX 23817794 23817871 -153156269 + L2 LINE L2 3183 3263 -9 1219 134 90 80 chrX 23818233 23818654 -153155486 + THE1C LTR MaLR 1 428 0 9343 108 60 14 chrX 23818654 23820159 -153153981 + THE1C-int LTR MaLR 1 1574 -6 2098 129 52 19 chrX 23820164 23820527 -153153613 + THE1C LTR MaLR 1 375 0 21 0 0 0 chrX 23820918 23820939 -153153201 + AT_rich Low_complexity Low_complexity 1 21 0 1972 130 18 7 chrX 23820941 23821225 -153152915 - AluSx SINE Alu -21 291 5 320 326 96 48 chrX 23821300 23821487 -153152653 - L2 LINE L2 0 3272 3077 2104 141 3 0 chrX 23823870 23824174 -153149966 + AluSx SINE Alu 3 307 -5 1015 309 126 2 chrX 23824193 23824639 -153149501 + L2 LINE L2 851 1351 -1963 271 388 33 0 chrX 23824674 23824826 -153149314 + L2 LINE L2 2988 3144 -169 305 191 19 19 chrX 23824839 23824890 -153149250 + (TA)n Simple_repeat Simple_repeat 1 51 -54 2369 138 26 54 chrX 23824890 23825390 -153148750 - LTR19A LTR ERV1 0 486 1 305 191 19 19 chrX 23825390 23825443 -153148697 + (TA)n Simple_repeat Simple_repeat 50 105 0 211 277 36 71 chrX 23825452 23825564 -153148576 + L2 LINE L2 3141 3248 -65 870 178 50 0 chrX 23825569 23825749 -153148391 - MER20 DNA MER1_type 0 219 31 186 43 0 0 chrX 23825842 23825865 -153148275 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 485 220 11 77 chrX 23826013 23826195 -153147945 + MER5B DNA MER1_type 5 174 -4 584 291 109 30 chrX 23827004 23828154 -153145986 - L1M4 LINE L1 -3446 2683 1478 1062 128 0 0 chrX 23828174 23828338 -153145802 + L1 LINE L1 4086 4249 -1897 * 3032 239 59 15 chrX 23828336 23829376 -153144764 + MSTA-int LTR MaLR 546 1735 0 2025 144 72 55 chrX 23829376 23829754 -153144386 + MSTA LTR MaLR 1 388 -40 2438 87 3 3 chrX 23829754 23830063 -153144077 - AluSp SINE Alu 0 313 5 2025 144 72 55 chrX 23830063 23830101 -153144039 + MSTA LTR MaLR 388 424 -4 620 197 0 7 chrX 23830104 23830246 -153143894 + L1MA5 LINE L1 6157 6297 -3 451 286 60 46 chrX 23830246 23830463 -153143677 - L1M4 LINE L1 -4843 1467 1248 614 274 111 5 chrX 23830463 23830653 -153143487 + LTR33 LTR ERVL 1 210 -311 424 216 116 66 chrX 23830739 23830920 -153143220 + LTR33 LTR ERVL 332 521 0 1281 206 26 18 chrX 23830942 23831352 -153142788 + MLT2D LTR ERVL 1 414 -50 317 233 47 23 chrX 23831498 23831584 -153142556 + L1M LINE L1 5299 5386 -2422 31 0 0 0 chrX 23831955 23831986 -153142154 + AT_rich Low_complexity Low_complexity 1 31 0 379 287 48 59 chrX 23832421 23832662 -153141478 - L1M4 LINE L1 -4870 1249 1007 2217 103 0 3 chrX 23832662 23832953 -153141187 - AluY SINE Alu -17 294 5 379 287 48 59 chrX 23832953 23833428 -153140712 - L1M4 LINE L1 -5112 1007 540 26 64 0 0 chrX 23834073 23834120 -153140020 + AT_rich Low_complexity Low_complexity 1 47 0 234 303 26 0 chrX 23834347 23834423 -153139717 + MLT1L LTR MaLR 205 282 -333 385 275 67 34 chrX 23834534 23834639 -153139501 + MLT1L LTR MaLR 412 527 -88 2632 106 35 30 chrX 23834639 23835065 -153139075 - MSTA LTR MaLR 0 428 1 385 275 67 34 chrX 23835065 23835137 -153139003 + MLT1L LTR MaLR 527 595 -20 2297 241 54 2 chrX 23835167 23835719 -153138421 + MLT1G LTR MaLR 10 590 0 374 231 209 8 chrX 23836098 23836232 -153137908 + MIR3 SINE MIR 33 193 -15 1130 174 75 72 chrX 23836254 23836617 -153137523 + MLT1D LTR MaLR 1 424 -81 3769 100 9 104 chrX 23836617 23836702 -153137438 + MER51A LTR ERV1 1 93 -541 2381 69 3 41 chrX 23836702 23837019 -153137121 + AluSp SINE Alu 1 305 -8 3769 100 9 104 chrX 23837019 23837634 -153136506 + MER51A LTR ERV1 93 634 0 1130 174 75 72 chrX 23837634 23837717 -153136423 + MLT1D LTR MaLR 424 505 0 564 303 42 0 chrX 23837717 23837882 -153136258 + MIR SINE MIR 14 185 -77 42 71 0 0 chrX 23837914 23837998 -153136142 + AT_rich Low_complexity Low_complexity 1 84 0 294 234 126 18 chrX 23838054 23838165 -153135975 - MIR SINE MIR -70 192 70 281 209 124 124 chrX 23839464 23839593 -153134547 + MER5B DNA MER1_type 1 129 -49 2178 108 0 0 chrX 23839893 23840211 -153133929 - AluSx SINE Alu 0 318 1 219 228 13 38 chrX 23840424 23840503 -153133637 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 337 291 63 25 chrX 23840877 23841035 -153133105 + HAL1b LINE L1 739 902 -446 620 257 127 30 chrX 23841510 23841848 -153132292 + HAL1 LINE L1 2128 2498 -9 294 246 14 14 chrX 23842538 23842607 -153131533 - L2 LINE L2 -9 3263 3195 289 377 22 22 chrX 23842783 23842921 -153131219 - MIR3 SINE MIR -61 147 10 740 310 29 4 chrX 23843273 23843515 -153130625 - MIR SINE MIR 0 262 15 195 0 56 28 chrX 23844867 23844903 -153129237 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 585 129 0 0 chrX 23845283 23845376 -153128764 + (TG)n Simple_repeat Simple_repeat 2 94 0 195 232 14 116 chrX 23846230 23846299 -153127841 - L2 LINE L2 0 3272 3211 21 0 0 0 chrX 23847229 23847250 -153126890 + AT_rich Low_complexity Low_complexity 1 21 0 2127 122 20 7 chrX 23847342 23847645 -153126495 + AluSx SINE Alu 2 308 -4 2221 121 3 0 chrX 23848261 23848566 -153125574 + AluSx SINE Alu 1 306 -6 2267 115 0 3 chrX 23848715 23849019 -153125121 - AluSx SINE Alu -9 303 1 2338 144 8 0 chrX 23849547 23849909 -153124231 - MLT1A1 LTR MaLR 0 365 1 794 192 176 0 chrX 23850216 23850398 -153123742 - MER58A DNA MER1_type -9 215 2 2257 189 48 67 chrX 23851382 23851600 -153122540 + L1MD2 LINE L1 5682 5903 -456 1694 168 7 23 chrX 23851600 23851903 -153122237 + AluJb SINE Alu 1 298 -14 2257 189 48 67 chrX 23851903 23852372 -153121768 + L1MD2 LINE L1 5903 6356 -3 3635 139 48 8 chrX 23902419 23903131 -153071009 + Tigger3(Golem) DNA MER2_type 2290 3029 0 758 249 47 26 chrX 23903173 23903366 -153070774 - MIR SINE MIR -59 203 7 989 250 88 70 chrX 23904005 23904505 -153069635 + LTR33A LTR ERVL 1 509 -14 41942 44 0 1 chrX 23906291 23912441 -153061699 - L1PA4 LINE L1 -4 6151 2 219 320 67 0 chrX 23912447 23912522 -153061618 - MIR SINE MIR -62 146 67 22 0 0 0 chrX 23912551 23912573 -153061567 + AT_rich Low_complexity Low_complexity 1 22 0 468 275 133 88 chrX 23912843 23913250 -153060890 + MLT1K LTR MaLR 78 502 -86 937 222 23 28 chrX 23913257 23913473 -153060667 - LTR16A LTR ERVL -6 444 230 308 277 107 0 chrX 23914038 23914150 -153059990 - MIR SINE MIR 0 262 139 961 189 6 11 chrX 23914150 23914330 -153059810 + MLT1D LTR MaLR 1 179 -326 1113 121 0 0 chrX 23914330 23914487 -153059653 + AluSp/q SINE Alu 157 313 0 463 229 57 14 chrX 23914512 23914652 -153059488 + L1MC4 LINE L1 7896 8041 -1 1955 154 13 10 chrX 23916042 23916162 -153057978 + AluJo SINE Alu 1 119 -193 198 0 0 0 chrX 23916162 23916184 -153057956 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1955 154 13 10 chrX 23916184 23916374 -153057766 + AluJo SINE Alu 119 312 0 26 0 0 0 chrX 23916822 23916848 -153057292 + AT_rich Low_complexity Low_complexity 1 26 0 580 176 84 8 chrX 23916893 23917012 -153057128 + MLT1B LTR MaLR 20 147 -243 385 152 0 0 chrX 23917016 23917082 -153057058 + MLT1B LTR MaLR 323 388 -2 901 307 68 70 chrX 23917090 23917814 -153056326 + L1M4 LINE L1 19 740 -5802 241 200 60 0 chrX 23918828 23918878 -153055262 - LTR67 LTR ERVL 0 557 505 583 189 0 0 chrX 23919538 23919644 -153054496 + MER63 DNA MER1_type 11 742 -94 555 275 78 67 chrX 23920112 23920396 -153053744 - MLT1H LTR MaLR -16 533 247 1989 154 0 0 chrX 23920472 23920770 -153053370 - AluSx SINE Alu 0 312 15 310 128 0 0 chrX 23920788 23920835 -153053305 - MLT1I LTR MaLR -265 144 98 376 353 0 25 chrX 23920926 23921048 -153053092 - L2 LINE L2 -48 3224 3106 372 345 86 46 chrX 23922197 23922314 -153051826 - L2 LINE L2 -196 3076 2965 2162 179 63 16 chrX 23922314 23922760 -153051380 + MLT1C LTR MaLR 1 467 0 372 345 86 46 chrX 23922760 23923069 -153051071 - L2 LINE L2 -307 2965 2621 277 169 34 0 chrX 23923076 23923135 -153051005 - MLT1H LTR MaLR 0 549 489 567 344 46 43 chrX 23923230 23923556 -153050584 - MLT1H LTR MaLR -216 333 7 1367 203 40 58 chrX 23924225 23924622 -153049518 + MLT1B LTR MaLR 1 396 0 959 330 139 46 chrX 23924852 23926914 -153047226 - L2 LINE L2 -823 2491 239 525 289 56 15 chrX 23927200 23927397 -153046743 + MIR SINE MIR 52 256 -6 524 304 22 78 chrX 23927396 23927626 -153046514 - L3 LINE CR1 -459 1118 902 * 1967 161 20 55 chrX 23927722 23928126 -153046014 - MLT1B LTR MaLR 0 390 1 540 95 30 0 chrX 23928141 23928243 -153045897 - L1MA4 LINE L1 -412 5885 5777 3413 109 12 32 chrX 23928878 23928929 -153045211 + L1MA4 LINE L1 5291 5342 -958 3039 113 7 0 chrX 23928929 23929354 -153044786 + MSTA LTR MaLR 1 428 0 3413 109 12 32 chrX 23929354 23929888 -153044252 + L1MA4 LINE L1 5342 5864 -436 1023 268 98 45 chrX 23929981 23930452 -153043688 - L1ME3A LINE L1 -138 5966 5471 296 304 0 36 chrX 23930468 23930606 -153043534 - L1ME3A LINE L1 -2540 3540 3408 358 330 73 0 chrX 23930646 23930864 -153043276 - L1ME3A LINE L1 -3302 2778 2545 298 294 11 0 chrX 23931017 23931109 -153043031 - L1ME3A LINE L1 -5975 95 3 915 122 0 8 chrX 23931493 23931624 -153042516 + AluSg/x SINE Alu 169 298 -12 567 308 75 13 chrX 23931743 23931818 -153042322 - HAL1 LINE L1 -958 1549 1480 180 77 0 0 chrX 23931818 23931844 -153042296 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 567 308 75 13 chrX 23931844 23932076 -153042064 - HAL1 LINE L1 -1027 1480 1223 3856 88 5 27 chrX 23932257 23932765 -153041375 - L1P LINE L1 -2565 3581 3086 2289 91 16 0 chrX 23932765 23933073 -153041067 - AluSp SINE Alu 0 313 1 3856 88 5 27 chrX 23933073 23933157 -153040983 - L1P LINE L1 -3060 3086 3002 2050 108 6 54 chrX 23933224 23933538 -153040602 - AluSx SINE Alu -13 299 1 640 288 12 21 chrX 23933539 23933782 -153040358 + MER112 DNA MER1_type 6 246 -14 355 296 128 35 chrX 23934585 23934811 -153039329 + MIR SINE MIR 16 262 0 11004 123 23 12 chrX 23935556 23937314 -153036826 + Tigger1 DNA MER2_type 1 1777 -641 3268 115 18 37 chrX 23937321 23937868 -153036272 - L1MA3 LINE L1 0 7724 7188 1148 128 21 0 chrX 23937873 23938060 -153036080 + Tigger1 DNA MER2_type 1114 1304 -1114 15771 168 16 13 chrX 23938060 23938173 -153035967 - L1MA3 LINE L1 -733 6991 6880 2529 51 0 0 chrX 23938173 23938469 -153035671 + AluY SINE Alu 1 296 -15 15771 168 16 13 chrX 23938469 23941933 -153032207 - L1MA3 LINE L1 -844 6880 3398 606 186 26 64 chrX 23943044 23943200 -153030940 - MER5B DNA MER1_type -27 151 2 2185 112 0 13 chrX 23943216 23943530 -153030610 + AluSx SINE Alu 1 310 -2 1385 174 45 7 chrX 23943762 23944050 -153030090 - MER33 DNA MER1_type -23 301 3 536 288 102 13 chrX 23944545 23944781 -153029359 + MLT1L LTR MaLR 349 605 -10 597 14 0 0 chrX 23946140 23946210 -153027930 + (TG)n Simple_repeat Simple_repeat 2 71 0 1097 240 51 14 chrX 23946811 23947163 -153026977 + L1MC4 LINE L1 7692 8041 -1 6622 127 21 16 chrX 23947241 23948388 -153025752 + L1MA10 LINE L1 5155 6327 -7 285 283 97 9 chrX 23949524 23949637 -153024503 - MIR SINE MIR -38 224 102 23 33 0 0 chrX 23949966 23949996 -153024144 + AT_rich Low_complexity Low_complexity 1 30 0 1016 307 50 37 chrX 23953471 23953956 -153020184 + LTR16C LTR ERVL 1 491 0 223 200 22 0 chrX 23954643 23954688 -153019452 + MIR SINE MIR 106 151 -111 5490 124 2 34 chrX 23954745 23955640 -153018500 - L1MC1 LINE L1 -2 6331 5465 2461 131 91 11 chrX 23955640 23956082 -153018058 - L1MA9 LINE L1 -43 6269 5793 2263 187 60 17 chrX 23956077 23956759 -153017381 - L1MC1 LINE L1 -743 5403 4745 * 277 360 63 18 chrX 23958547 23958769 -153015371 + L2 LINE L2 1488 1719 -1595 275 231 66 11 chrX 23958779 23958870 -153015270 + L1MC5 LINE L1 7835 7930 -31 3791 186 32 8 chrX 23958871 23959642 -153014498 - L1MB8 LINE L1 -38 6140 5351 4244 115 54 34 chrX 23959774 23960529 -153013611 + L1PB4 LINE L1 5387 6156 0 545 276 127 48 chrX 23961173 23962130 -153012010 + L1ME3A LINE L1 1281 2529 -4593 * 2549 242 75 30 chrX 23962127 23962974 -153011166 + L1ME3A LINE L1 6101 6954 -11 1013 235 38 4 chrX 23963551 23963789 -153010351 - MIR SINE MIR -15 247 2 195 69 0 0 chrX 23964231 23964260 -153009880 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 312 218 0 26 chrX 23965467 23965545 -153008595 + MER58B DNA MER1_type 263 338 -3 357 339 67 18 chrX 23965545 23965710 -153008430 + L1ME3A LINE L1 5790 5962 -208 392 255 0 6 chrX 23965893 23966050 -153008090 + (TA)n Simple_repeat Simple_repeat 1 156 0 340 147 53 0 chrX 23966096 23966171 -153007969 + MLT1H LTR MaLR 471 549 0 545 286 54 15 chrX 23966730 23966933 -153007207 + L3 LINE CR1 1366 1576 -1 252 263 9 70 chrX 23967030 23967144 -153006996 + MLT1L LTR MaLR 1 107 -508 227 250 17 0 chrX 23967357 23967417 -153006723 + MLT1L LTR MaLR 168 228 -387 584 287 100 14 chrX 23967540 23968006 -153006134 + MLT1G1 LTR MaLR 1 592 -3 549 306 95 0 chrX 23968012 23968234 -153005906 + MLT1L LTR MaLR 372 614 -1 232 279 108 9 chrX 23968421 23968532 -153005608 - L1ME4a LINE L1 -31 6090 5969 732 315 26 13 chrX 23969333 23969635 -153004505 - LTR16C LTR ERVL -27 464 159 22 0 0 0 chrX 23970385 23970407 -153003733 + AT_rich Low_complexity Low_complexity 1 22 0 1098 68 0 8 chrX 23970407 23970540 -153003600 - AluSq/x SINE Alu -181 132 1 350 170 123 53 chrX 23971416 23971587 -153002553 + MER31-int LTR ERV1 1289 1471 -3465 28 48 0 0 chrX 23971628 23971670 -153002470 + AT_rich Low_complexity Low_complexity 1 42 0 347 223 39 31 chrX 23971794 23971924 -153002216 + MER31-int LTR ERV1 1785 1915 -3021 1693 189 62 75 chrX 23972482 23972812 -153001328 - MLT1D LTR MaLR -3 502 169 7055 56 10 11 chrX 23972812 23974416 -152999724 + SVA Other Other 11 1381 -5 180 0 0 0 chrX 23974419 23974439 -152999701 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1693 189 62 75 chrX 23974439 23974605 -152999535 - MLT1D LTR MaLR -338 167 6 275 229 57 132 chrX 23974752 23975032 -152999108 + MER31-int LTR ERV1 2650 2908 -2028 1365 159 9 4 chrX 23975087 23975313 -152998827 + AluJo SINE Alu 86 312 0 2467 53 0 31 chrX 23975572 23975890 -152998250 - AluY SINE Alu -3 308 1 2286 95 3 0 chrX 23976206 23976500 -152997640 - AluSq SINE Alu -18 295 1 1631 189 3 20 chrX 23976505 23976802 -152997338 - AluJo SINE Alu -20 292 1 267 334 17 14 chrX 23977323 23977450 -152996690 + MIR SINE MIR 20 146 -62 300 227 40 0 chrX 23977950 23978025 -152996115 + MER5C DNA MER1_type 45 122 -202 189 167 0 0 chrX 23978190 23978226 -152995914 + MER5C DNA MER1_type 289 324 0 315 267 108 108 chrX 23978297 23978548 -152995592 - MER102a DNA MER1_type -3 327 77 327 277 40 10 chrX 23979427 23979528 -152994612 - MIR SINE MIR -119 143 40 700 223 145 42 chrX 23981360 23981692 -152992448 + LTR37A LTR ERV1 8 373 -53 577 357 109 6 chrX 23981749 23982088 -152992052 + L2 LINE L2 2412 2785 -529 351 334 60 108 chrX 23982085 23982417 -152991723 + L2 LINE L2 2957 3272 0 * 234 0 0 0 chrX 23982484 23982510 -152991630 + (T)n Simple_repeat Simple_repeat 1 26 0 1437 156 0 0 chrX 23982521 23982733 -152991407 - AluJo SINE Alu -100 212 1 248 255 170 9 chrX 23982733 23982839 -152991301 + MIR SINE MIR 121 243 -19 1308 181 8 4 chrX 23983138 23983397 -152990743 + L1MB7 LINE L1 5910 6169 -15 342 238 12 151 chrX 23983745 23983917 -152990223 + MER5A DNA MER1_type 6 164 -25 1121 216 23 0 chrX 23984739 23984957 -152989183 - MER58A DNA MER1_type 0 224 2 1042 273 109 40 chrX 23985852 23986375 -152987765 + MLT1G1 LTR MaLR 3 561 -34 244 301 71 35 chrX 23987085 23987198 -152986942 + MIR SINE MIR 67 183 -79 333 234 169 45 chrX 23987522 23987547 -152986593 + L1MC5 LINE L1 7752 7773 -188 429 20 0 0 chrX 23987547 23987597 -152986543 + (CA)n Simple_repeat Simple_repeat 2 51 0 333 234 169 45 chrX 23987597 23987725 -152986415 + L1MC5 LINE L1 7773 7924 -37 21 36 0 0 chrX 23987946 23987974 -152986166 + AT_rich Low_complexity Low_complexity 1 28 0 2067 112 54 0 chrX 23988373 23988667 -152985473 + AluSx SINE Alu 1 310 -2 24 53 0 0 chrX 23988815 23988853 -152985287 + AT_rich Low_complexity Low_complexity 1 38 0 307 299 0 8 chrX 23988921 23989038 -152985102 + L1ME LINE L1 5701 5816 -305 1029 214 15 0 chrX 23989075 23989276 -152984864 - AluJo SINE Alu -22 290 87 430 244 58 12 chrX 23989419 23989583 -152984557 - MER63 DNA MER1_type 0 1060 38 845 244 27 23 chrX 23990274 23990495 -152983645 - MER58A DNA MER1_type 0 224 3 322 269 37 45 chrX 23990769 23990903 -152983237 + MIR SINE MIR 80 212 -50 22 56 0 0 chrX 23990938 23990974 -152983166 + AT_rich Low_complexity Low_complexity 1 36 0 264 237 0 0 chrX 23992189 23992248 -152981892 - L1ME4a LINE L1 -85 6036 5978 359 236 99 19 chrX 23992506 23992638 -152981502 + MIR SINE MIR 113 256 -6 2551 57 0 19 chrX 23992708 23993046 -152981094 + AluY SINE Alu 1 332 0 670 147 0 0 chrX 23993414 23993516 -152980624 + AluJ/FLAM SINE Alu 1 102 -210 1640 138 0 71 chrX 23993518 23993801 -152980339 + AluJo SINE Alu 33 295 -17 384 22 0 0 chrX 23993834 23993879 -152980261 + (TG)n Simple_repeat Simple_repeat 2 46 0 294 29 0 0 chrX 23993880 23993915 -152980225 + (GA)n Simple_repeat Simple_repeat 2 36 0 272 109 164 18 chrX 23994373 23994428 -152979712 + MIR SINE MIR 176 238 -24 214 241 74 0 chrX 23994395 23994449 -152979691 + L2 LINE L2 3251 3308 -5 * 314 231 0 0 chrX 23994575 23994653 -152979487 - MER116 DNA Mariner -2 78 1 180 0 0 0 chrX 23995316 23995336 -152978804 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 298 287 119 10 chrX 23996107 23996208 -152977932 + MIR3 SINE MIR 88 199 -9 25 31 0 0 chrX 23997613 23997645 -152976495 + AT_rich Low_complexity Low_complexity 1 32 0 2464 11 0 0 chrX 23998710 23998982 -152975158 + AluYa5 SINE Alu 39 310 -1 320 202 65 40 chrX 23999380 23999504 -152974636 + MER103 DNA DNA 37 163 -3 1311 164 45 11 chrX 23999659 23999946 -152974194 + MER33 DNA MER1_type 6 302 -22 207 69 0 0 chrX 24000217 24000246 -152973894 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 193 175 0 chrX 24003177 24003232 -152970908 + L2 LINE L2 3193 3257 -56 293 307 59 10 chrX 24003232 24003333 -152970807 + MIR SINE MIR 3 108 -154 212 235 0 0 chrX 24003724 24003775 -152970365 + (CA)n Simple_repeat Simple_repeat 1 51 0 281 26 26 0 chrX 24003897 24003935 -152970205 + (CA)n Simple_repeat Simple_repeat 2 40 0 1106 238 41 3 chrX 24006546 24006887 -152967253 - Charlie4a DNA MER1_type -64 444 91 584 291 123 30 chrX 24007724 24008057 -152966083 + L1MB5 LINE L1 3122 3485 -2661 2484 168 97 9 chrX 24008170 24008694 -152965446 + MER101B LTR ERV1 1 570 0 441 200 39 23 chrX 24008829 24008959 -152965181 + L1PB4 LINE L1 6024 6155 -1 933 287 36 8 chrX 24009302 24009664 -152964476 - L2 LINE L2 -243 3070 2700 232 317 36 36 chrX 24009722 24009943 -152964197 + L1MB5 LINE L1 4056 4276 -1870 681 270 33 7 chrX 24010082 24010386 -152963754 + L1MB5 LINE L1 4337 4648 -1498 357 338 133 18 chrX 24010531 24010922 -152963218 + L1MB5 LINE L1 4943 5378 -768 1251 165 85 31 chrX 24011182 24011315 -152962825 + AluJo SINE Alu 9 133 -172 2652 109 48 10 chrX 24011315 24011727 -152962413 - MSTA LTR MaLR 0 428 1 1251 165 85 31 chrX 24011727 24011876 -152962264 + AluJo SINE Alu 133 305 0 208 255 0 0 chrX 24011940 24011987 -152962153 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 560 253 16 55 chrX 24012024 24012206 -152961934 - MIR SINE MIR 0 262 88 304 125 0 25 chrX 24012736 24012816 -152961324 + (TA)n Simple_repeat Simple_repeat 1 78 0 565 221 16 0 chrX 24012818 24012945 -152961195 + L1MB5 LINE L1 5620 5748 -2060 2253 154 65 0 chrX 24012980 24013383 -152960757 + MSTB1 LTR MaLR 4 432 0 21 57 0 0 chrX 24013528 24013563 -152960577 + AT_rich Low_complexity Low_complexity 1 35 0 281 187 421 0 chrX 24013875 24013982 -152960158 - MER5A DNA MER1_type -29 160 9 1409 147 51 61 chrX 24014610 24014985 -152959155 + LTR37A LTR ERV1 56 426 0 236 75 0 25 chrX 24015143 24015183 -152958957 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 755 211 46 40 chrX 24015225 24015400 -152958740 + MER45A DNA AcHobo 1 176 -2 221 359 83 39 chrX 24015565 24015746 -152958394 - L2 LINE L2 -171 3101 2913 2880 135 23 2 chrX 24016036 24016517 -152957623 + L1PA15 LINE L1 5675 6165 0 236 146 0 0 chrX 24016521 24016569 -152957571 + L1MB5 LINE L1 6127 6174 0 225 286 0 0 chrX 24016644 24016693 -152957447 - L2 LINE L2 -17 3296 3248 624 259 137 29 chrX 24016887 24017231 -152956909 + LTR16A1 LTR ERVL 1 381 -76 572 357 130 33 chrX 24017358 24017953 -152956187 + L2 LINE L2 2606 3262 -10 21 0 0 0 chrX 24018237 24018258 -152955882 + AT_rich Low_complexity Low_complexity 1 21 0 361 330 0 27 chrX 24019032 24019144 -152954996 - MIR SINE MIR -63 145 37 200 345 0 52 chrX 24020021 24020137 -152954003 + L3b LINE CR1 1262 1371 -212 21 57 0 0 chrX 24020508 24020543 -152953597 + AT_rich Low_complexity Low_complexity 1 35 0 544 252 168 7 chrX 24020724 24020879 -152953261 - MER5A DNA MER1_type 0 189 10 997 162 88 28 chrX 24020899 24021183 -152952957 + MER33 DNA MER1_type 23 323 -1 1116 190 9 9 chrX 24021768 24021979 -152952161 + MER58A DNA MER1_type 10 220 -4 457 283 25 0 chrX 24022100 24022220 -152951920 - L2 LINE L2 -1 3312 3190 237 335 116 43 chrX 24022227 24022391 -152951749 - L2 LINE L2 0 3272 3097 1310 215 78 43 chrX 24022418 24022842 -152951298 + MLT2B1 LTR ERVL 1 414 0 1479 161 7 65 chrX 24023434 24023713 -152950427 + AluJo SINE Alu 40 302 -10 1877 245 53 6 chrX 24023735 24024204 -152949936 + LTR16C LTR ERVL 1 491 0 191 279 100 86 chrX 24024513 24024653 -152949487 - L2 LINE L2 -216 3056 2915 296 297 55 33 chrX 24026241 24026332 -152947808 + L2 LINE L2 3137 3229 -43 211 231 39 0 chrX 24026398 24026450 -152947690 + CT-rich Low_complexity Low_complexity 2 55 0 447 276 0 29 chrX 24026452 24026557 -152947583 - L2 LINE L2 -10 3303 3202 214 360 36 36 chrX 24026895 24027034 -152947106 - L2 LINE L2 0 3272 3134 234 128 0 0 chrX 24027761 24027800 -152946340 + (TG)n Simple_repeat Simple_repeat 2 40 0 2054 52 0 0 chrX 24029216 24029467 -152944673 + L1PA5 LINE L1 5899 6149 -5 26 0 0 0 chrX 24029718 24029744 -152944396 + AT_rich Low_complexity Low_complexity 1 26 0 4658 57 16 0 chrX 24029753 24030334 -152943806 + L1PA5 LINE L1 5564 6153 -1 336 160 21 96 chrX 24030717 24030751 -152943389 + MER5B DNA MER1_type 92 127 -51 2220 119 0 3 chrX 24030751 24031054 -152943086 - AluSx SINE Alu -10 302 1 336 160 21 96 chrX 24031054 24031113 -152943027 + MER5B DNA MER1_type 127 178 0 24 32 0 0 chrX 24031158 24031189 -152942951 + AT_rich Low_complexity Low_complexity 1 31 0 502 253 70 70 chrX 24031359 24031479 -152942661 + MER5A DNA MER1_type 4 126 -63 6629 63 17 0 chrX 24031479 24032677 -152941463 - L1PA8A LINE L1 0 6131 4927 502 253 70 70 chrX 24032677 24032742 -152941398 + MER5A DNA MER1_type 125 189 0 2383 88 7 0 chrX 24033734 24034041 -152940099 - AluY SINE Alu -2 309 1 269 279 13 0 chrX 24035025 24035104 -152939036 - L2 LINE L2 -227 3045 2966 409 184 144 103 chrX 24035151 24035325 -152938815 - MER5A DNA MER1_type 0 189 9 858 191 6 11 chrX 24036110 24036288 -152937852 + MER5B DNA MER1_type 2 178 0 386 217 200 8 chrX 24036572 24036692 -152937448 + MIR3 SINE MIR 16 158 -50 824 268 0 0 chrX 24036713 24036896 -152937244 - MER5A DNA MER1_type -6 183 1 711 296 80 4 chrX 24036984 24037210 -152936930 + MIR SINE MIR 3 245 -17 483 305 8 8 chrX 24037540 24037668 -152936472 + MIR3 SINE MIR 73 200 -8 434 271 98 64 chrX 24038317 24038757 -152935383 + MLT1L LTR MaLR 142 596 -19 270 264 38 0 chrX 24039673 24039751 -152934389 + MIR SINE MIR 60 146 -62 28 29 0 0 chrX 24039774 24039809 -152934331 + AT_rich Low_complexity Low_complexity 1 35 0 321 148 148 78 chrX 24040478 24040564 -152933576 - L2 LINE L2 -17 3296 3199 1731 164 74 11 chrX 24040564 24040917 -152933223 + THE1C LTR MaLR 1 375 0 321 148 148 78 chrX 24040917 24040945 -152933195 - L2 LINE L2 -114 3199 3174 252 0 0 0 chrX 24041219 24041247 -152932893 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 268 220 11 22 chrX 24041764 24041855 -152932285 + L1MC4 LINE L1 6614 6703 -1339 252 200 0 0 chrX 24041855 24041910 -152932230 + (TA)n Simple_repeat Simple_repeat 1 55 0 1618 196 72 54 chrX 24041938 24042438 -152931702 + L1ME3 LINE L1 5648 6156 -6 473 259 69 23 chrX 24042651 24042782 -152931358 - MER91A DNA MER1_type -35 161 25 228 67 0 0 chrX 24042994 24043024 -152931116 + (TC)n Simple_repeat Simple_repeat 1 30 0 264 287 54 78 chrX 24043503 24043761 -152930379 - MLT1J LTR MaLR -212 299 48 4707 92 12 12 chrX 24044595 24045267 -152928873 + L1PA15 LINE L1 5490 6161 -4 878 115 18 24 chrX 24045272 24045437 -152928703 - L1MA5A LINE L1 -20 6277 6114 604 104 0 0 chrX 24045436 24045542 -152928598 + L1MA5A LINE L1 5937 6042 -255 * 320 280 170 0 chrX 24045832 24045932 -152928208 + MIR3 SINE MIR 90 206 -2 1210 195 75 23 chrX 24046129 24046477 -152927663 - L1MC4 LINE L1 -34 8008 7643 42083 35 5 3 chrX 24046479 24052625 -152921515 + L1PA3 LINE L1 3 6155 0 991 213 58 0 chrX 24052642 24052900 -152921240 - L1MC4 LINE L1 -387 7655 7383 356 250 236 14 chrX 24053450 24053598 -152920542 - MER5A DNA MER1_type 0 189 9 265 321 12 0 chrX 24054844 24054928 -152919212 - MIR SINE MIR -119 143 59 243 169 92 46 chrX 24055279 24055344 -152918796 - MIR SINE MIR -104 158 91 273 225 9 72 chrX 24055736 24055847 -152918293 + MLT1J2 LTR MaLR 318 421 -29 196 403 0 0 chrX 24056404 24056471 -152917669 - L2 LINE L2 -50 3263 3197 24 32 0 0 chrX 24056486 24056517 -152917623 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 24056622 24056643 -152917497 + AT_rich Low_complexity Low_complexity 1 21 0 1051 261 135 18 chrX 24056653 24057209 -152916931 + L1MC4a LINE L1 5293 5913 -1895 24 32 0 0 chrX 24057427 24057458 -152916682 + AT_rich Low_complexity Low_complexity 1 31 0 2087 143 96 69 chrX 24062207 24062655 -152911485 + MLT1C LTR MaLR 8 467 0 412 270 105 58 chrX 24063487 24063848 -152910292 + MLT1L LTR MaLR 215 509 -2 819 246 17 6 chrX 24064108 24064287 -152909853 - MER5A DNA MER1_type -7 182 2 226 301 80 44 chrX 24064382 24064495 -152909645 + L2 LINE L2 3156 3272 0 21 0 0 0 chrX 24064719 24064740 -152909400 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 24065142 24065171 -152908969 + AT_rich Low_complexity Low_complexity 1 29 0 360 329 30 18 chrX 24065573 24065740 -152908400 + MIR SINE MIR 8 176 -86 673 248 147 0 chrX 24065746 24065903 -152908237 + MER5A DNA MER1_type 8 187 -2 * 992 221 47 4 chrX 24065898 24066133 -152908007 + MIR SINE MIR 3 247 -15 927 215 0 11 chrX 24066677 24066854 -152907286 - MER5B DNA MER1_type 0 178 4 1300 215 104 17 chrX 24067271 24067675 -152906465 + L1ME3 LINE L1 5723 6161 -1 890 247 31 45 chrX 24067706 24067993 -152906147 - L2 LINE L2 -4 3309 3027 344 283 53 18 chrX 24068287 24068400 -152905740 + L2 LINE L2 3182 3298 -15 321 336 0 25 chrX 24068692 24068814 -152905326 - MER5A DNA MER1_type 0 189 71 1978 100 0 21 chrX 24068830 24069167 -152904973 + AluSx SINE Alu 1 331 0 688 246 105 0 chrX 24069184 24069375 -152904765 - MIR SINE MIR -34 228 18 1406 263 68 3 chrX 24069847 24070216 -152903924 + LTR16C LTR ERVL 99 491 0 1652 245 113 10 chrX 24070605 24071111 -152903029 + MLT1G1 LTR MaLR 1 590 -5 1089 183 16 0 chrX 24072614 24072800 -152901340 + MER5A DNA MER1_type 1 189 0 406 307 129 21 chrX 24072835 24072975 -152901165 + MIR3 SINE MIR 31 185 -23 1220 243 48 68 chrX 24074466 24074580 -152899560 - L2 LINE L2 0 3313 3198 3241 185 29 2 chrX 24074580 24075127 -152899013 + MER68 LTR ERV1 1 562 0 1220 243 48 68 chrX 24075127 24075560 -152898580 - L2 LINE L2 -115 3198 2782 656 219 46 127 chrX 24076152 24076435 -152897705 + MLT1H LTR MaLR 13 272 -277 318 228 56 41 chrX 24076488 24076654 -152897486 + MLT1G1 LTR MaLR 382 595 0 372 338 91 58 chrX 24128010 24128407 -152845733 - L2 LINE L2 -559 2755 2346 364 347 14 23 chrX 24128617 24128915 -152845225 + MLT1K LTR MaLR 43 425 -163 21 36 0 0 chrX 24128968 24128996 -152845144 + AT_rich Low_complexity Low_complexity 1 28 0 301 260 195 0 chrX 24129014 24129137 -152845003 + MLT1K LTR MaLR 433 579 -9 417 296 89 11 chrX 24129312 24129498 -152844642 + MIR SINE MIR 44 254 -8 19979 31 0 0 chrX 24129671 24132853 -152841287 - L1PA5 LINE L1 -1 6153 2972 2952 121 0 0 chrX 24132853 24133291 -152840849 - L1P LINE L1 -5706 440 3 289 209 57 38 chrX 24134752 24134857 -152839283 - MLT1J LTR MaLR 0 511 405 960 284 38 38 chrX 24134861 24135256 -152838884 + L1M3d LINE L1 413 807 -5496 2099 244 65 35 chrX 24135657 24136765 -152837375 + L1M3d LINE L1 777 1818 -4518 417 191 0 38 chrX 24136873 24137010 -152837130 + L1M3d LINE L1 2419 2577 -3840 1310 202 26 19 chrX 24137018 24137076 -152837064 + L1M3d LINE L1 3178 3234 -3148 2246 157 18 0 chrX 24137076 24137472 -152836668 - MER57A LTR ERV1 0 403 1 1310 202 26 19 chrX 24137472 24137839 -152836301 + L1M3d LINE L1 3234 3606 -2776 11527 96 40 18 chrX 24137839 24139436 -152834704 + MER61A-int LTR ERV1 3349 4991 -226 2204 110 0 3 chrX 24139436 24139735 -152834405 - AluSg SINE Alu -12 298 1 11527 96 40 18 chrX 24139735 24139932 -152834208 + MER61A-int LTR ERV1 4991 5182 -35 472 79 0 0 chrX 24139958 24140021 -152834119 + MER61A-int LTR ERV1 5155 5217 0 1773 142 64 24 chrX 24140021 24140351 -152833789 + MER61A LTR ERV1 1 343 0 237 159 0 0 chrX 24141363 24141407 -152832733 + (TA)n Simple_repeat Simple_repeat 2 45 0 2265 95 0 22 chrX 24141466 24141782 -152832358 - AluSg1 SINE Alu 0 309 1 206 314 35 12 chrX 24142524 24142610 -152831530 + MIR3 SINE MIR 85 172 -36 268 337 0 11 chrX 24142674 24142763 -152831377 - MER5B DNA MER1_type -78 100 13 468 51 0 0 chrX 24143004 24143063 -152831077 + (TG)n Simple_repeat Simple_repeat 2 60 0 1958 165 67 5 chrX 24143152 24143557 -152830583 - MLT2C2 LTR ERVL -35 417 1 204 336 66 33 chrX 24144391 24144513 -152829627 - MER5A DNA MER1_type -1 188 63 2544 203 80 51 chrX 24144587 24145167 -152828973 - L1MD3 LINE L1 -1 7994 7432 319 189 232 0 chrX 24145167 24145262 -152828878 - MLT1F1 LTR MaLR -442 125 9 2544 203 80 51 chrX 24145262 24145761 -152828379 - L1MD3 LINE L1 -563 7432 6564 317 283 0 10 chrX 24145773 24145872 -152828268 - L1M4 LINE L1 -822 5324 5227 270 239 36 126 chrX 24146349 24146516 -152827624 - MIR SINE MIR -3 259 108 1885 251 58 8 chrX 24146822 24147564 -152826576 + L1ME LINE L1 4165 4943 -1203 1801 252 22 8 chrX 24147639 24148369 -152825771 + L1ME LINE L1 5055 5795 -371 258 32 0 0 chrX 24148727 24148758 -152825382 + (TTA)n Simple_repeat Simple_repeat 3 33 0 6758 32 8 1 chrX 24148758 24149604 -152824536 - L1PA5 LINE L1 -18 6136 5285 1899 162 0 7 chrX 24153036 24153338 -152820802 + AluJb SINE Alu 1 300 -12 219 114 0 0 chrX 24154289 24154324 -152819816 + (CA)n Simple_repeat Simple_repeat 2 36 0 3269 191 10 5 chrX 24155617 24156219 -152817921 + L1PA13 LINE L1 106 710 -6077 414 250 0 0 chrX 24156221 24156317 -152817823 + L1PA13 LINE L1 762 857 -5930 * 1405 223 54 5 chrX 24156316 24156684 -152817456 + L1 LINE L1 4709 5094 -1052 804 295 26 57 chrX 24156761 24157185 -152816955 + LTR67 LTR ERVL 114 524 -33 1295 93 52 0 chrX 24157825 24158019 -152816121 + L1PA13 LINE L1 5952 6155 -8 386 256 311 11 chrX 24158067 24158247 -152815893 - MLT1K LTR MaLR -338 250 17 209 333 13 13 chrX 24158750 24158828 -152815312 + MIR SINE MIR 59 136 -126 30 0 0 0 chrX 24158858 24158888 -152815252 + AT_rich Low_complexity Low_complexity 1 30 0 340 298 39 10 chrX 24159152 24159256 -152814884 - L2 LINE L2 -19 3253 3147 231 325 0 12 chrX 24159266 24159346 -152814794 - MLT1K LTR MaLR -324 264 186 240 309 99 25 chrX 24159362 24159443 -152814697 - MER5A DNA MER1_type -66 123 37 291 326 37 66 chrX 24160811 24161097 -152813043 - LTR16A1 LTR ERVL 0 457 182 207 214 0 0 chrX 24161991 24162033 -152812107 - MIR SINE MIR -5 257 216 509 265 127 0 chrX 24162430 24162587 -152811553 - MER5A DNA MER1_type -6 183 4 800 236 6 6 chrX 24162598 24162772 -152811368 - MER5B DNA MER1_type 0 178 5 30936 118 10 68 chrX 24162884 24168395 -152805745 + L1P LINE L1 9 5198 -948 2156 284 83 19 chrX 24168448 24169286 -152804854 - HAL1 LINE L1 -1574 933 42 2035 108 14 14 chrX 24169435 24169723 -152804417 + AluSx SINE Alu 1 288 -24 567 43 0 0 chrX 24169723 24169793 -152804347 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 265 300 83 25 chrX 24170944 24171064 -152803076 - MIR SINE MIR -66 142 16 27 81 0 0 chrX 24171118 24171180 -152802960 + AT_rich Low_complexity Low_complexity 1 62 0 27 62 0 0 chrX 24171313 24171361 -152802779 + AT_rich Low_complexity Low_complexity 1 48 0 799 226 0 46 chrX 24171668 24171863 -152802277 + AluJo SINE Alu 127 312 0 1767 210 29 51 chrX 24171863 24172349 -152801791 - L1MC4 LINE L1 -231 7811 7337 1791 176 0 7 chrX 24172903 24173205 -152800935 + AluJb SINE Alu 1 300 -12 875 279 58 79 chrX 24174006 24174078 -152800062 - LTR16C LTR ERVL 0 491 419 1424 225 41 41 chrX 24174078 24174443 -152799697 - MLT1A1 LTR MaLR 0 365 1 875 279 58 79 chrX 24174443 24174786 -152799354 - LTR16C LTR ERVL -72 419 85 846 280 101 67 chrX 24175753 24176189 -152797951 - LTR16B LTR ERVL 0 464 14 896 295 62 3 chrX 24177561 24177962 -152796178 + LTR16C LTR ERVL 3 464 -27 2362 179 12 2 chrX 24177965 24178374 -152795766 - MSTB LTR MaLR -13 413 1 1095 213 77 0 chrX 24178578 24178785 -152795355 + MER58A DNA MER1_type 1 223 -1 196 333 11 67 chrX 24179277 24179367 -152794773 + L2 LINE L2 3169 3253 -19 206 375 12 12 chrX 24179983 24180063 -152794077 - L2 LINE L2 -91 3181 3102 652 223 193 17 chrX 24180136 24180374 -152793766 - LTR16A1 LTR ERVL -1 456 177 232 119 48 24 chrX 24180545 24180587 -152793553 + LTR67 LTR ERVL 21 63 -494 318 271 119 17 chrX 24180640 24180758 -152793382 + LTR67 LTR ERVL 428 557 0 291 54 0 0 chrX 24181070 24181107 -152793033 + (CA)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chrX 24181106 24181127 -152793013 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 183 283 176 31 chrX 24181248 24181407 -152792733 - L2 LINE L2 -1266 2048 1867 399 265 124 105 chrX 24181541 24181847 -152792293 + L2 LINE L2 2958 3269 -3 967 228 18 18 chrX 24182666 24182890 -152791250 - MER58A DNA MER1_type 0 224 1 548 243 14 27 chrX 24183145 24183293 -152790847 + MER58B DNA MER1_type 196 341 0 293 231 0 15 chrX 24183435 24183500 -152790640 + MER5B DNA MER1_type 112 175 -3 566 241 154 12 chrX 24183511 24183673 -152790467 - MER5A DNA MER1_type -1 188 4 522 226 26 0 chrX 24183702 24183817 -152790323 - MER5B DNA MER1_type -59 119 2 1893 140 10 0 chrX 24184392 24184685 -152789455 + L1PA13 LINE L1 5861 6156 -7 929 220 27 0 chrX 24184739 24184925 -152789215 - MIR SINE MIR -32 230 40 2150 152 42 25 chrX 24185316 24185672 -152788468 + THE1B LTR MaLR 3 364 0 520 321 120 23 chrX 24186234 24186766 -152787374 + L2 LINE L2 2105 2688 -626 2187 85 7 0 chrX 24187106 24187415 -152786725 - AluSp SINE Alu 0 312 2 364 108 54 0 chrX 24187495 24187569 -152786571 + (CACCC)n Simple_repeat Simple_repeat 1 78 0 335 267 217 65 chrX 24188453 24188790 -152785350 - L1M2 LINE L1 -5542 1307 920 320 317 66 42 chrX 24188817 24188984 -152785156 - HAL1 LINE L1 -1416 1091 921 386 273 81 12 chrX 24189639 24189800 -152784340 + MLT1J2 LTR MaLR 1 172 -278 569 301 24 10 chrX 24190542 24190748 -152783392 - L1M4c LINE L1 -4623 2023 1815 4820 173 40 16 chrX 24190793 24191683 -152782457 + MSTA-int LTR MaLR 740 1651 0 2095 185 75 5 chrX 24191683 24192083 -152782057 + MSTA LTR MaLR 1 428 0 2846 238 39 41 chrX 24192083 24192902 -152781238 - L1M4c LINE L1 -4827 1819 1000 1141 236 26 92 chrX 24192902 24193292 -152780848 + MLT1A1 LTR MaLR 1 364 -1 2846 238 39 41 chrX 24193292 24193469 -152780671 - L1M4c LINE L1 -5646 1000 822 180 0 0 0 chrX 24193469 24193489 -152780651 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 2846 238 39 41 chrX 24193489 24193546 -152780594 - L1M4c LINE L1 -5824 822 766 1498 130 42 13 chrX 24193546 24193784 -152780356 + AluSq SINE Alu 37 281 -32 244 96 58 0 chrX 24193804 24193856 -152780284 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 246 241 0 0 chrX 24193863 24193921 -152780219 - L1M4c LINE L1 -5771 771 714 343 267 13 0 chrX 24193924 24193999 -152780141 + ERVL LTR ERVL 3407 3482 -2282 201 182 0 23 chrX 24194371 24194415 -152779725 + MIR3 SINE MIR 10 52 -156 228 35 0 0 chrX 24194426 24194455 -152779685 + (CA)n Simple_repeat Simple_repeat 2 30 0 396 340 92 5 chrX 24194616 24194801 -152779339 + MIR SINE MIR 58 258 -4 1203 151 131 4 chrX 24194844 24194870 -152779270 - L1MA9 LINE L1 -7 6305 6284 285 29 0 0 chrX 24194870 24194904 -152779236 + (TA)n Simple_repeat Simple_repeat 2 35 0 1203 151 131 4 chrX 24194904 24195136 -152779004 - L1MA9 LINE L1 -28 6284 6014 231 286 0 29 chrX 24195645 24195715 -152778425 - MLT1L LTR MaLR -547 68 1 775 265 21 0 chrX 24195910 24196099 -152778041 - MER58A DNA MER1_type -31 193 1 402 69 0 0 chrX 24196142 24196200 -152777940 + (TG)n Simple_repeat Simple_repeat 1 58 0 929 203 65 76 chrX 24196366 24196657 -152777483 - MLT1A2 LTR MaLR -7 367 80 2292 189 20 0 chrX 24196657 24197053 -152777087 + LTR57 LTR ERVL 1 404 -7 446 206 22 11 chrX 24197051 24197143 -152776997 - MLT1A2 LTR MaLR -281 93 1 * 279 210 0 0 chrX 24197143 24197205 -152776935 - MLT1A2-int LTR MaLR 0 1735 1674 1313 204 26 71 chrX 24197205 24197587 -152776553 + LTR8 LTR ERV1 176 540 -151 1940 128 10 0 chrX 24197937 24198227 -152775913 + L1PA13 LINE L1 5864 6156 -7 1032 205 35 0 chrX 24198267 24198467 -152775673 - MIR SINE MIR -16 246 40 2123 152 33 33 chrX 24198859 24199221 -152774919 + THE1B LTR MaLR 3 364 0 617 320 116 22 chrX 24199782 24200317 -152773823 + L2 LINE L2 2105 2689 -625 370 101 29 0 chrX 24200812 24200881 -152773259 + (CACCC)n Simple_repeat Simple_repeat 3 73 0 333 308 116 70 chrX 24201682 24202123 -152772017 - L1M2 LINE L1 -5633 1216 756 226 270 166 58 chrX 24202170 24202411 -152771729 - HAL1 LINE L1 -1429 1078 812 415 271 79 13 chrX 24202976 24203156 -152770984 + MLT1J2 LTR MaLR 1 189 -257 231 319 56 44 chrX 24203212 24203372 -152770768 + MLT1J2 LTR MaLR 286 447 -3 474 18 0 0 chrX 24203555 24203610 -152770530 + (CA)n Simple_repeat Simple_repeat 2 56 0 1600 165 26 36 chrX 24203667 24203976 -152770164 + AluJb SINE Alu 1 306 -6 184 305 0 95 chrX 24204289 24204384 -152769756 + L2 LINE L2 3137 3222 -50 2066 109 44 3 chrX 24204607 24204900 -152769240 + AluSq SINE Alu 1 305 -8 230 256 51 77 chrX 24204992 24205122 -152769018 - MIR SINE MIR -64 144 53 822 114 0 0 chrX 24205542 24205656 -152768484 + THE1C-int LTR MaLR 104 217 -1363 * 6645 154 13 14 chrX 24205648 24206750 -152767390 + THE1C-int LTR MaLR 477 1576 -4 809 144 65 26 chrX 24206754 24206907 -152767233 + THE1C LTR MaLR 1 159 -216 192 267 0 0 chrX 24207176 24207221 -152766919 + L3b LINE CR1 1399 1443 -140 4426 121 26 3 chrX 24207262 24207925 -152766215 - L1MA2 LINE L1 0 6304 5627 1742 156 4 0 chrX 24207935 24208204 -152765936 - L1M1 LINE L1 -5658 1907 1638 381 259 101 32 chrX 24208489 24208678 -152765462 - L1MC5 LINE L1 -87 7874 7673 2137 174 104 45 chrX 24208964 24209481 -152764659 - LTR10A LTR ERV1 -61 548 1 11317 151 15 23 chrX 24209482 24212627 -152761513 - Harlequin LTR ERV1 -2 6647 1818 332 214 167 0 chrX 24212627 24212711 -152761429 + LTR8 LTR ERV1 156 253 -438 1052 22 0 7 chrX 24212713 24212851 -152761289 - HERVI LTR ERV1 -5176 1720 1584 * 5397 104 10 19 chrX 24212828 24213710 -152760430 - HERVI LTR ERV1 -3269 3380 694 3569 195 29 14 chrX 24213728 24214462 -152759678 - HERVI LTR ERV1 -5198 2587 1843 780 172 6 41 chrX 24214456 24214625 -152759515 - HERVI LTR ERV1 -5941 708 546 * 806 216 50 25 chrX 24214698 24214976 -152759164 - HERVI LTR ERV1 -6364 285 1 1639 153 84 38 chrX 24214986 24215447 -152758693 - LTR10A LTR ERV1 -63 546 1 837 69 0 0 chrX 24215636 24215738 -152758402 - AluSc SINE Alu -12 297 196 3045 194 58 33 chrX 24215788 24216460 -152757680 + ERVL LTR ERVL 679 1367 -4397 1421 170 164 72 chrX 24216511 24217011 -152757129 - LTR49 LTR ERV1 -49 546 1 7015 161 8 16 chrX 24217011 24218256 -152755884 + ERVL LTR ERVL 1364 2598 -3166 2965 94 18 0 chrX 24218409 24218846 -152755294 - L1MA1 LINE L1 0 6302 5858 1326 245 51 72 chrX 24218846 24219458 -152754682 - LTR9 LTR ERV1 -13 599 1 3344 101 17 20 chrX 24219458 24220139 -152754001 - L1M1 LINE L1 -517 5787 5111 1219 96 45 0 chrX 24220139 24220338 -152753802 - LTR56 LTR ERV1 -110 335 128 1646 331 52 47 chrX 24221063 24222666 -152751474 - LTR56-int LTR ERV1 -253 6869 5260 362 292 86 39 chrX 24222701 24223061 -152751079 - PABL_B-int LTR ERV1 -1927 5829 5453 677 140 19 0 chrX 24223329 24223436 -152750704 - AluSx SINE Alu -9 301 193 1019 111 0 14 chrX 24223437 24223581 -152750559 - AluSx SINE Alu -165 147 6 1362 360 33 42 chrX 24223838 24225596 -152748544 - PABL_B-int LTR ERV1 -2867 4255 2513 300 48 24 0 chrX 24225702 24225744 -152748396 - tRNA-Met-e tRNA tRNA -32 43 1 861 359 32 7 chrX 24226638 24227193 -152746947 - PABL_B-int LTR ERV1 -5596 1526 958 285 279 18 34 chrX 24227450 24227654 -152746486 - PABL_B-int LTR ERV1 -6405 717 539 690 138 8 8 chrX 24228612 24228735 -152745405 - LTR56 LTR ERV1 -314 131 9 17250 144 48 15 chrX 24228741 24231809 -152742331 + ERVL LTR ERVL 2596 5764 0 2003 86 36 9 chrX 24232540 24232929 -152741211 + LTR7 LTR ERV1 1 450 0 10999 128 4 34 chrX 24232929 24235359 -152738781 + HERVH LTR ERV1 1 2661 -5052 2444 57 0 0 chrX 24235360 24235685 -152738455 + AluY SINE Alu 1 325 0 234 197 99 14 chrX 24235770 24235841 -152738299 + L1ME3 LINE L1 6006 6082 -80 1072 154 8 0 chrX 24235995 24239912 -152734228 + ALR/Alpha Satellite centromeric 1 3949 -28 1032 129 68 57 chrX 24240503 24240783 -152733357 - Charlie1 DNA MER1_type -2 2759 2477 470 211 61 9 chrX 24240790 24240904 -152733236 - Charlie1 DNA MER1_type -2641 120 1 354 254 63 72 chrX 24241474 24241651 -152732489 - MIR SINE MIR -62 146 19 23 68 0 0 chrX 24242172 24242216 -152731924 + AT_rich Low_complexity Low_complexity 1 44 0 250 269 15 0 chrX 24242847 24242914 -152731226 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 8480 197 67 38 chrX 24243884 24246807 -152727333 + L1MC1 LINE L1 2590 5607 -726 499 208 10 0 chrX 24246808 24246904 -152727236 - Tigger7 DNA MER2_type -1 2586 2490 * 1427 187 23 8 chrX 24246903 24247165 -152726975 - Tigger7 DNA MER2_type -2220 267 2 3604 163 31 19 chrX 24247173 24247877 -152726263 + L1MC1 LINE L1 5621 6333 0 295 304 16 24 chrX 24247937 24248062 -152726078 + L2 LINE L2 2278 2401 -913 802 272 63 116 chrX 24248075 24248408 -152725732 + L2 LINE L2 2817 3113 -200 198 71 0 0 chrX 24248408 24248436 -152725704 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 802 272 63 116 chrX 24248436 24248627 -152725513 + L2 LINE L2 3113 3313 0 229 286 41 68 chrX 24249233 24249380 -152724760 + MER5A DNA MER1_type 46 188 -1 1882 161 7 23 chrX 24249390 24249700 -152724440 + AluJb SINE Alu 3 307 -5 2585 48 0 19 chrX 24249914 24250229 -152723911 + AluSg SINE Alu 1 309 -1 656 231 131 0 chrX 24250356 24250516 -152723624 + MER5A DNA MER1_type 9 189 0 5445 116 60 14 chrX 24250719 24251816 -152722324 - Tigger3b DNA MER2_type 0 1231 2 250 224 35 0 chrX 24251833 24251891 -152722249 - MIR SINE MIR -94 168 109 583 258 79 0 chrX 24253378 24253556 -152720584 + MIR SINE MIR 70 261 -1 22 0 0 0 chrX 24253556 24253578 -152720562 + AT_rich Low_complexity Low_complexity 1 22 0 202 226 0 38 chrX 24254034 24254087 -152720053 + MIR3 SINE MIR 155 205 -3 2164 85 7 3 chrX 24254468 24254792 -152719348 + AluSp SINE Alu 1 325 0 2412 198 60 46 chrX 24255572 24256725 -152717415 + L1MD2 LINE L1 5589 6231 -11 2656 183 13 48 chrX 24256725 24256782 -152717358 + L1MA10 LINE L1 5734 5791 -543 2504 77 44 0 chrX 24256782 24257122 -152717018 + THE1A LTR MaLR 1 355 0 11746 95 4 5 chrX 24257123 24258703 -152715437 + THE1A-int LTR MaLR 2 1580 0 2746 65 14 3 chrX 24258703 24259054 -152715086 + THE1A LTR MaLR 1 355 0 2656 183 13 48 chrX 24259054 24259601 -152714539 + L1MA10 LINE L1 5789 6320 -14 23 54 0 0 chrX 24260008 24260045 -152714095 + AT_rich Low_complexity Low_complexity 1 37 0 46 33 0 0 chrX 24261739 24261799 -152712341 + AT_rich Low_complexity Low_complexity 1 60 0 858 189 24 0 chrX 24262438 24262607 -152711533 - MER5A DNA MER1_type -15 174 2 2616 128 39 36 chrX 24262731 24263199 -152710941 - Tigger3b DNA MER2_type 0 1231 763 931 114 0 0 chrX 24263213 24263336 -152710804 + FLAM_C SINE Alu 1 123 -20 183 62 104 0 chrX 24263339 24263387 -152710753 + (TTAAA)n Simple_repeat Simple_repeat 3 55 0 3430 99 92 128 chrX 24263394 24264194 -152709946 - Tigger3b DNA MER2_type -455 776 5 686 305 168 19 chrX 24264283 24264598 -152709542 - L3 LINE CR1 -235 1342 981 246 198 70 70 chrX 24264996 24265082 -152709058 + MER117 DNA MER1_type 95 180 -17 343 48 0 0 chrX 24265154 24265196 -152708944 - MER4E LTR ERV1 -72 694 653 25 0 0 0 chrX 24265756 24265781 -152708359 + AT_rich Low_complexity Low_complexity 1 25 0 1560 154 3 96 chrX 24265979 24266331 -152707809 - AluJb SINE Alu 0 323 1 379 381 30 5 chrX 24268678 24268875 -152705265 + MIR3 SINE MIR 6 207 -1 24 32 0 0 chrX 24269614 24269645 -152704495 + AT_rich Low_complexity Low_complexity 1 31 0 2080 132 3 0 chrX 24271452 24271755 -152702385 - AluSx SINE Alu -8 304 1 202 265 0 20 chrX 24272124 24272173 -152701967 - L3 LINE CR1 -4 1573 1526 397 259 48 78 chrX 24272372 24272538 -152701602 - MIR3 SINE MIR -36 172 12 2264 151 145 29 chrX 24272543 24272775 -152701365 + L1MC1 LINE L1 5170 5374 -959 2032 128 8 68 chrX 24272775 24273142 -152700998 - MER7A DNA MER2_type -2 344 2 2264 151 145 29 chrX 24273142 24273808 -152700332 + L1MC1 LINE L1 5374 6229 -104 344 186 105 23 chrX 24273800 24273886 -152700254 + L1MB5 LINE L1 5998 6090 -84 * 416 177 0 0 chrX 24273943 24274022 -152700118 + L1MB5 LINE L1 6096 6174 0 1200 174 148 23 chrX 24275537 24275842 -152698298 + MER2 DNA MER2_type 1 343 -1 192 214 143 0 chrX 24276843 24276899 -152697241 + MIR SINE MIR 76 139 -69 587 219 0 17 chrX 24276970 24277089 -152697051 + FLAM_A SINE Alu 5 121 -12 1629 138 56 175 chrX 24277403 24277831 -152696309 + MER51A LTR ERV1 1 634 0 1891 171 48 45 chrX 24278857 24279278 -152694862 + MSTB2 LTR MaLR 36 457 0 237 286 0 26 chrX 24279618 24279695 -152694445 - MLT1L LTR MaLR -540 75 1 935 251 5 5 chrX 24279908 24280115 -152694025 - MER58A DNA MER1_type -2 222 16 205 316 63 0 chrX 24280348 24280427 -152693713 - MER5B DNA MER1_type -91 87 4 266 200 33 0 chrX 24280438 24280498 -152693642 - MER5A DNA MER1_type 0 189 128 360 275 54 27 chrX 24280836 24281008 -152693132 + MIR SINE MIR 4 175 -62 2401 174 24 5 chrX 24281840 24282265 -152691875 + Tigger2a DNA MER2_type 1 433 -1 3878 108 78 5 chrX 24282509 24283109 -152691031 + LTR9B LTR ERV1 1 644 0 353 281 141 36 chrX 24283588 24283780 -152690360 - MIR SINE MIR -47 215 4 2623 139 116 22 chrX 24283836 24284376 -152689764 + LTR24B LTR ERV1 1 635 0 22 0 0 0 chrX 24284539 24284561 -152689579 + AT_rich Low_complexity Low_complexity 1 22 0 380 198 62 0 chrX 24286154 24286235 -152687905 + MER103 DNA DNA 22 107 -59 286 283 0 0 chrX 24286324 24286384 -152687756 + L3 LINE CR1 1516 1575 -2 254 273 36 0 chrX 24286444 24286499 -152687641 - L3 LINE CR1 -7 1570 1514 24 53 0 0 chrX 24287097 24287135 -152687005 + AT_rich Low_complexity Low_complexity 1 38 0 388 48 32 16 chrX 24287575 24287638 -152686502 + (TTTTA)n Simple_repeat Simple_repeat 1 64 0 24950 28 3 0 chrX 24287638 24291404 -152682736 - L1PA3 LINE L1 -24 6131 2358 228 254 9 55 chrX 24292272 24292382 -152681758 + G-rich Low_complexity Low_complexity 1 105 0 207 0 0 0 chrX 24292895 24292918 -152681222 + (A)n Simple_repeat Simple_repeat 1 23 0 1848 192 93 50 chrX 24294457 24294941 -152679199 - MLT1D LTR MaLR 0 505 1 363 199 0 8 chrX 24294989 24295062 -152679078 - MER5B DNA MER1_type -36 153 73 182 303 37 64 chrX 24295641 24295750 -152678390 - L3 LINE CR1 -16 1561 1456 218 357 161 20 chrX 24295764 24296316 -152677824 + L2 LINE L2 2221 2850 -464 437 215 70 25 chrX 24297043 24297201 -152676939 + L1ME2 LINE L1 2706 2870 -3276 2657 250 59 32 chrX 24297215 24298992 -152675148 + L1ME2 LINE L1 4331 6154 -10 312 27 0 0 chrX 24298999 24299036 -152675104 + (CA)n Simple_repeat Simple_repeat 2 38 0 305 133 0 0 chrX 24299040 24299085 -152675055 + AluS SINE Alu 48 92 -211 430 293 48 52 chrX 24299185 24299414 -152674726 + AluJb SINE Alu 48 275 -27 512 247 133 19 chrX 24299477 24299635 -152674505 + MER8 DNA MER2_type 4 179 -60 411 179 30 0 chrX 24299607 24299674 -152674466 + MER2 DNA MER2_type 277 345 0 * 255 285 102 0 chrX 24299773 24299910 -152674230 + L1MC4 LINE L1 7891 8041 -1 21 0 0 0 chrX 24300769 24300790 -152673350 + AT_rich Low_complexity Low_complexity 1 21 0 574 315 35 11 chrX 24301091 24301351 -152672789 + LTR16B LTR ERVL 124 389 -75 311 113 19 0 chrX 24301525 24301578 -152672562 + (CACCC)n Simple_repeat Simple_repeat 5 58 0 313 276 128 64 chrX 24302495 24302698 -152671442 - L1M2 LINE L1 -5962 887 672 1617 160 28 53 chrX 24302946 24303265 -152670875 + AluJb SINE Alu 1 311 -1 23 0 0 0 chrX 24303325 24303348 -152670792 + AT_rich Low_complexity Low_complexity 1 23 0 2118 124 0 10 chrX 24303916 24304222 -152669918 + AluSq SINE Alu 1 303 -10 1776 119 4 15 chrX 24304426 24304687 -152669453 - AluSx SINE Alu -15 297 40 2342 191 158 104 chrX 24306608 24307161 -152666979 - L1MC3 LINE L1 -1 7784 7263 397 213 43 21 chrX 24307161 24307255 -152666885 - MLT1F1 LTR MaLR -436 131 36 2342 191 158 104 chrX 24307255 24307631 -152666509 - L1MC3 LINE L1 -522 7263 6706 373 310 148 20 chrX 24307917 24308120 -152666020 - MIR SINE MIR -3 259 31 401 100 0 0 chrX 24308143 24308203 -152665937 - L1MA9 LINE L1 -6 6306 6247 219 317 233 8 chrX 24308215 24308335 -152665805 + L2 LINE L2 3163 3309 -4 1363 254 157 52 chrX 24308926 24309984 -152664156 - L2 LINE L2 -1 3312 2136 14510 38 0 5 chrX 24310142 24311918 -152662222 - L1P LINE L1 -3824 2322 555 375 23 0 0 chrX 24311937 24311981 -152662159 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 314 15 117 chrX 24312889 24312956 -152661184 - L2 LINE L2 -1 3271 3223 1421 127 28 0 chrX 24312956 24313168 -152660972 + MER20 DNA MER1_type 2 219 0 187 314 15 117 chrX 24313168 24313237 -152660903 - L2 LINE L2 -49 3223 3149 2316 91 60 28 chrX 24313266 24313619 -152660521 - THE1B LTR MaLR 0 364 1 269 49 0 0 chrX 24314287 24314328 -152659812 - L1MA9 LINE L1 -37 6275 6235 2075 114 0 7 chrX 24314329 24314626 -152659514 - AluSg SINE Alu -15 295 1 582 265 40 30 chrX 24314717 24314917 -152659223 + MIR SINE MIR 19 220 -42 235 321 57 57 chrX 24315807 24315947 -152658193 - MIR SINE MIR -66 196 57 305 181 69 28 chrX 24315988 24316060 -152658080 - L1ME3A LINE L1 -58 6112 6038 473 323 8 0 chrX 24316118 24316245 -152657895 - L2 LINE L2 -6 3266 3139 277 350 119 7 chrX 24316287 24316430 -152657710 - L2 LINE L2 -410 2904 2746 704 212 21 106 chrX 24316901 24317164 -152656976 - L1ME3A LINE L1 -189 5981 5742 1887 197 19 8 chrX 24317164 24317525 -152656615 + MLT1A1 LTR MaLR 1 365 0 704 212 21 106 chrX 24317525 24317544 -152656596 - L1ME3A LINE L1 -428 5742 5723 2757 136 9 9 chrX 24317716 24318142 -152655998 + MSTA LTR MaLR 1 426 -2 9031 171 28 6 chrX 24318144 24319760 -152654380 + MSTA-int LTR MaLR 1 1651 0 2571 103 75 0 chrX 24319760 24320158 -152653982 + MSTA LTR MaLR 1 428 0 679 244 30 36 chrX 24320653 24320821 -152653319 - MIR SINE MIR -62 200 34 486 235 14 52 chrX 24320999 24321187 -152652953 + L1MA10 LINE L1 5988 6333 -1 1377 180 34 8 chrX 24321389 24321430 -152652710 + MLT1F LTR MaLR 269 307 -235 2135 116 0 7 chrX 24321430 24321732 -152652408 + AluSx SINE Alu 1 300 -12 1377 180 34 8 chrX 24321732 24321957 -152652183 + MLT1F LTR MaLR 307 542 0 188 67 33 0 chrX 24321984 24322014 -152652126 + (TA)n Simple_repeat Simple_repeat 1 31 0 2932 184 73 81 chrX 24322016 24322848 -152651292 - L1ME3A LINE L1 -25 6145 5320 23 0 0 0 chrX 24323815 24323838 -152650302 + AT_rich Low_complexity Low_complexity 1 23 0 228 130 259 0 chrX 24324941 24324995 -152649145 - L1ME LINE L1 -294 5827 5760 261 188 0 58 chrX 24325014 24325083 -152649057 + L1ME LINE L1 5769 5833 -288 235 234 11 85 chrX 24327000 24327094 -152647046 - MIR SINE MIR -71 191 105 259 354 79 24 chrX 24327625 24327752 -152646388 + L2 LINE L2 3121 3254 -18 301 232 87 43 chrX 24327986 24328171 -152645969 - L1ME LINE L1 -289 5832 5640 252 59 0 0 chrX 24328504 24328538 -152645602 + (A)n Simple_repeat Simple_repeat 1 34 0 297 306 99 0 chrX 24328562 24328673 -152645467 - L2 LINE L2 -3 3269 3148 235 267 0 17 chrX 24330554 24330614 -152643526 - L2 LINE L2 0 3272 3214 189 0 0 0 chrX 24330990 24331011 -152643129 + (TA)n Simple_repeat Simple_repeat 2 22 0 1204 256 37 16 chrX 24331013 24331388 -152642752 + L1ME LINE L1 878 1260 -5294 1954 187 117 17 chrX 24331421 24331881 -152642259 + L1ME LINE L1 158 663 -5901 1200 217 68 10 chrX 24331883 24332178 -152641962 + MER2 DNA MER2_type 29 340 -5 2361 186 43 24 chrX 24332179 24332768 -152641372 + L1ME LINE L1 474 1051 -4994 973 283 89 20 chrX 24332774 24333312 -152640828 + L1ME LINE L1 1270 1844 -4720 8707 155 27 33 chrX 24333317 24334949 -152639191 + L1MA8 LINE L1 3676 5319 -972 2091 120 0 33 chrX 24334949 24335250 -152638890 + AluSx SINE Alu 1 291 -21 8707 155 27 33 chrX 24335250 24335563 -152638577 + L1MA8 LINE L1 5319 5632 -659 6562 173 69 62 chrX 24335563 24337197 -152636943 - MER52A LTR ERV1 0 1755 1 1220 132 15 5 chrX 24337197 24337402 -152636738 + L1MA8 LINE L1 5629 5835 -456 1953 239 38 27 chrX 24337792 24338348 -152635792 + MER68 LTR ERV1 1 562 0 1150 238 58 69 chrX 24339954 24340488 -152633652 - L1ME LINE L1 -5198 872 345 1676 123 33 27 chrX 24340601 24340672 -152633468 + L1MA8 LINE L1 5902 5971 -320 2673 100 3 16 chrX 24340672 24341041 -152633099 - THE1B LTR MaLR 0 364 1 1676 123 33 27 chrX 24341041 24341270 -152632870 + L1MA8 LINE L1 5971 6204 -87 23 0 0 0 chrX 24341308 24341331 -152632809 + AT_rich Low_complexity Low_complexity 1 23 0 1777 287 61 26 chrX 24341331 24342680 -152631460 + L1ME LINE L1 1882 3235 -3329 507 314 138 45 chrX 24342689 24343065 -152631075 - MER68 LTR ERV1 -7 555 145 512 209 64 21 chrX 24343276 24343463 -152630677 + L1ME LINE L1 3257 3451 -3113 266 222 118 69 chrX 24344073 24344217 -152629923 - LTR40b LTR ERVL -42 420 270 * 678 329 91 35 chrX 24344101 24344585 -152629555 - REP3 LTR ERV -44 518 8 2072 68 68 4 chrX 24345196 24345476 -152628664 + LTR3 LTR ERVK 1 298 -134 501 17 0 0 chrX 24345601 24345659 -152628481 + (CA)n Simple_repeat Simple_repeat 1 58 0 1589 171 23 32 chrX 24345716 24346025 -152628115 + AluJb SINE Alu 1 306 -6 2311 72 10 0 chrX 24346656 24346949 -152627191 + AluY SINE Alu 1 296 -15 268 330 76 8 chrX 24348699 24348817 -152625323 - MIR SINE MIR -90 172 47 294 222 16 0 chrX 24349068 24349131 -152625009 + L2 LINE L2 3248 3311 -2 679 321 123 19 chrX 24350969 24351505 -152622635 - L2 LINE L2 -625 2689 2098 910 236 52 0 chrX 24352333 24352524 -152621616 + MIR SINE MIR 40 240 -22 384 310 7 14 chrX 24353478 24353620 -152620520 - MIR SINE MIR -34 228 88 289 316 12 10 chrX 24353667 24353769 -152620371 - MIR3 SINE MIR -135 73 11 22 0 0 0 chrX 24355047 24355069 -152619071 + AT_rich Low_complexity Low_complexity 1 22 0 554 274 123 11 chrX 24355069 24355248 -152618892 - MIR SINE MIR -49 213 15 306 0 0 0 chrX 24355929 24355963 -152618177 + (TAGA)n Simple_repeat Simple_repeat 2 35 0 207 204 0 0 chrX 24355976 24356020 -152618120 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 359 162 0 0 chrX 24356090 24356158 -152617982 - MLT1E2 LTR MaLR -8 618 551 1002 247 4 21 chrX 24356298 24356537 -152617603 - MLT1D LTR MaLR -258 247 13 22 0 0 0 chrX 24357722 24357744 -152616396 + AT_rich Low_complexity Low_complexity 1 22 0 748 222 167 52 chrX 24358717 24359041 -152615099 + MLT1J2 LTR MaLR 1 361 -89 22 35 0 0 chrX 24359309 24359338 -152614802 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 24559893 24559914 -152414226 + AT_rich Low_complexity Low_complexity 1 21 0 2312 114 0 0 chrX 24560036 24560342 -152413798 - AluSx SINE Alu -6 306 1 272 318 68 23 chrX 24560962 24561094 -152413046 - MIR3 SINE MIR -10 198 61 266 212 273 0 chrX 24561117 24561183 -152412957 - MIR SINE MIR -10 252 169 498 289 57 26 chrX 24561322 24561550 -152412590 - MLT1J1 LTR MaLR -141 305 71 259 316 152 19 chrX 24562600 24562758 -152411382 - MIR SINE MIR -64 198 20 2562 77 0 0 chrX 24562829 24563142 -152410998 + AluSp SINE Alu 1 313 0 773 174 0 0 chrX 24563180 24563312 -152410828 - MER68 LTR ERV1 -7 555 424 991 273 67 38 chrX 24564214 24564296 -152409844 - L2 LINE L2 -1 3312 3234 2116 91 26 42 chrX 24564296 24564604 -152409536 + AluSx SINE Alu 1 303 -9 991 273 67 38 chrX 24564604 24564938 -152409202 - L2 LINE L2 -79 3234 2884 233 54 0 54 chrX 24565089 24565126 -152409014 - L1MB1 LINE L1 -87 6081 6047 1944 96 57 21 chrX 24565126 24565407 -152408733 + AluSx SINE Alu 1 291 -21 2297 99 3 0 chrX 24565407 24565701 -152408439 + AluSg SINE Alu 1 295 -15 4156 173 18 2 chrX 24565723 24566609 -152407531 - L1MB1 LINE L1 -112 6056 5156 1387 191 8 3 chrX 24566904 24567403 -152406737 - MER68 LTR ERV1 -7 555 1 1038 211 76 63 chrX 24568185 24568565 -152405575 - MLT1B LTR MaLR 0 390 6 460 281 121 17 chrX 24569010 24569241 -152404899 + MIR SINE MIR 2 256 -6 207 139 0 0 chrX 24570213 24570249 -152403891 + (TTTTG)n Simple_repeat Simple_repeat 3 38 0 2376 36 0 0 chrX 24570429 24570707 -152403433 + L1PA4 LINE L1 5864 6141 -14 726 206 0 78 chrX 24570884 24571127 -152403013 - L1MC5 LINE L1 -1003 6958 6735 305 205 179 27 chrX 24571185 24571297 -152402843 - L1ME4a LINE L1 -2 6119 5991 645 269 103 0 chrX 24572274 24572430 -152401710 + MER5A DNA MER1_type 7 178 -11 1957 178 151 14 chrX 24573029 24573473 -152400667 - MLT1D LTR MaLR 0 505 1 1961 119 0 0 chrX 24574287 24574547 -152399593 - AluSg SINE Alu -13 297 38 2080 84 66 31 chrX 24575289 24575575 -152398565 - AluSq SINE Alu -17 296 1 2181 109 3 0 chrX 24575805 24576098 -152398042 + AluSx SINE Alu 1 294 -18 356 332 20 40 chrX 24576579 24576829 -152397311 - L1MC4a LINE L1 -892 6916 6672 665 239 23 11 chrX 24577100 24577276 -152396864 - MER5B DNA MER1_type 0 178 1 201 158 0 26 chrX 24577902 24577940 -152396200 + CT-rich Low_complexity Low_complexity 3 39 0 199 326 0 0 chrX 24578156 24578202 -152395938 + MER5A DNA MER1_type 144 189 0 583 226 175 0 chrX 24578476 24578613 -152395527 - MER5A DNA MER1_type -7 182 22 585 217 0 121 chrX 24578629 24578781 -152395359 - MER5B DNA MER1_type -3 175 51 2127 115 7 0 chrX 24578781 24579076 -152395064 + AluSx SINE Alu 2 298 -14 585 217 0 121 chrX 24579076 24579121 -152395019 - MER5B DNA MER1_type -127 51 2 1145 269 46 39 chrX 24579711 24580172 -152393968 - LTR16B LTR ERVL 0 464 1 293 325 58 25 chrX 24581616 24581736 -152392404 + L2 LINE L2 3149 3272 0 * 356 321 37 22 chrX 24581734 24581868 -152392272 + MIR SINE MIR 6 141 -121 2155 107 11 0 chrX 24582111 24582425 -152391715 - AluSx SINE Alu 0 317 1 337 213 40 13 chrX 24582535 24582610 -152391530 + L2 LINE L2 3193 3269 -44 616 173 0 0 chrX 24583760 24583870 -152390270 - Tigger3(Golem) DNA MER2_type -1 3028 2919 534 228 18 110 chrX 24583975 24584087 -152390053 - LTR16A1 LTR ERVL -39 418 334 488 252 28 0 chrX 24584087 24584194 -152389946 + MER81 DNA DNA 5 114 0 534 228 18 110 chrX 24584194 24584300 -152389840 - LTR16A1 LTR ERVL -123 334 220 1095 213 49 67 chrX 24584551 24584941 -152389199 - MLT1B LTR MaLR 0 390 8 1708 220 26 46 chrX 24586287 24586746 -152387394 - LTR16A LTR ERVL 0 450 1 206 208 57 0 chrX 24587154 24587207 -152386933 - L2 LINE L2 -624 2690 2635 388 247 143 7 chrX 24587268 24587422 -152386718 + MER96 DNA MER1_type 1 175 0 485 208 71 54 chrX 24587537 24587705 -152386435 - L2 LINE L2 -208 3105 2935 1010 156 21 5 chrX 24588821 24589007 -152385133 - MER5A DNA MER1_type 0 189 1 736 255 82 50 chrX 24589226 24590006 -152384134 - L1ME4a LINE L1 -104 6017 5221 23 33 0 0 chrX 24590664 24590694 -152383446 + AT_rich Low_complexity Low_complexity 1 30 0 2288 108 3 0 chrX 24590699 24590994 -152383146 + AluSx SINE Alu 2 297 -15 346 266 131 84 chrX 24592024 24592475 -152381665 - LTR67 LTR ERVL 0 557 86 253 253 103 0 chrX 24592535 24592622 -152381518 + MIR SINE MIR 166 261 -1 449 265 135 71 chrX 24592871 24592979 -152381161 - MER5A DNA MER1_type 0 189 65 2166 117 3 16 chrX 24592979 24593287 -152380853 - AluSx SINE Alu -8 304 1 449 265 135 71 chrX 24593287 24593348 -152380792 - MER5A DNA MER1_type -124 65 9 364 353 19 32 chrX 24593808 24593964 -152380176 + MIR3 SINE MIR 4 157 -51 283 302 71 18 chrX 24593965 24594134 -152380006 + MER117 DNA MER1_type 2 179 -18 298 271 68 42 chrX 24594180 24594298 -152379842 - L2 LINE L2 -1 3271 3151 243 310 14 0 chrX 24594295 24594366 -152379774 - MIR3 SINE MIR -3 205 134 * 2291 91 0 0 chrX 24594374 24594692 -152379448 - AluSx SINE Alu 0 318 1 1007 133 0 111 chrX 24594794 24594884 -152379256 - MER3 DNA MER1_type 0 209 111 2252 95 0 7 chrX 24594884 24595200 -152378940 + AluSx SINE Alu 1 314 0 1007 133 0 111 chrX 24595200 24595342 -152378798 - MER3 DNA MER1_type -98 111 2 823 143 50 11 chrX 24595921 24596103 -152378037 - MER53 DNA DNA 0 189 1 505 295 99 56 chrX 24596214 24596556 -152377584 + L2 LINE L2 2943 3299 -14 411 269 70 43 chrX 24596567 24596753 -152377387 + MIR SINE MIR 2 192 -70 209 325 81 16 chrX 24596832 24596955 -152377185 + MIR SINE MIR 106 236 -26 5592 156 25 6 chrX 24597093 24597878 -152376262 - L1MA7 LINE L1 -426 5865 5096 2139 124 36 30 chrX 24597878 24598240 -152375900 + THE1B LTR MaLR 1 364 0 5592 156 25 6 chrX 24598240 24599045 -152375095 - L1MA7 LINE L1 -1195 5096 4249 2522 123 21 14 chrX 24599045 24599467 -152374673 + L1MA7 LINE L1 5858 6289 -2 276 228 114 65 chrX 24599545 24599668 -152374472 + MIR SINE MIR 124 252 -10 2092 114 7 13 chrX 24602404 24602703 -152371437 + AluSx SINE Alu 1 297 -15 2257 131 0 3 chrX 24602723 24603036 -152371104 - AluSx SINE Alu 0 312 1 323 394 0 78 chrX 24603460 24603640 -152370500 + MER91A DNA MER1_type 1 166 -30 1362 200 40 84 chrX 24604493 24604969 -152369171 + LTR16A1 LTR ERVL 1 455 -2 1619 83 46 0 chrX 24605384 24605601 -152368539 + MER30 DNA MER1_type 1 227 -3 1120 148 28 0 chrX 24605615 24605797 -152368343 - MER5A DNA MER1_type -2 187 1 419 258 275 17 chrX 24605904 24606082 -152368058 + MIR SINE MIR 31 254 -8 4503 168 161 20 chrX 24606560 24607580 -152366560 - Charlie1 DNA MER1_type 0 2761 1551 2275 105 0 0 chrX 24607580 24607876 -152366264 - AluSx SINE Alu -16 296 1 4503 168 161 20 chrX 24607876 24608038 -152366102 - Charlie1 DNA MER1_type -1210 1551 1413 2212 124 0 0 chrX 24608192 24608490 -152365650 - AluSx SINE Alu -14 298 1 567 268 19 56 chrX 24608653 24608866 -152365274 - L2 LINE L2 -18 3295 3091 243 266 119 29 chrX 24608874 24608993 -152365147 - MER5A DNA MER1_type -2 187 29 253 329 13 0 chrX 24609007 24609083 -152365057 - L2 LINE L2 -238 3075 2999 615 344 17 9 chrX 24609658 24609888 -152364252 - L2 LINE L2 -338 2976 2745 1374 166 87 67 chrX 24610191 24610626 -152363514 + LTR56 LTR ERV1 1 444 -1 415 297 143 11 chrX 24610673 24610848 -152363292 + MIR SINE MIR 58 255 -7 1500 167 52 7 chrX 24611571 24611841 -152362299 + AluJo SINE Alu 9 290 -22 234 256 23 35 chrX 24611966 24612052 -152362088 + MIR SINE MIR 172 256 -6 586 228 10 67 chrX 24612813 24612888 -152361252 + L1ME3 LINE L1 5455 5533 -637 2370 78 3 13 chrX 24612888 24613196 -152360944 - AluY SINE Alu -6 305 1 586 228 10 67 chrX 24613196 24613313 -152360827 + L1ME3 LINE L1 5533 5636 -534 267 255 59 0 chrX 24613311 24613413 -152360727 + L1ME3 LINE L1 6053 6160 -2 * 1765 180 13 45 chrX 24613945 24614322 -152359818 - MLT1A1 LTR MaLR 0 365 1 522 250 58 19 chrX 24614552 24614945 -152359195 + LTR16B LTR ERVL 8 459 -5 298 257 0 0 chrX 24614977 24615051 -152359089 + HERV16 LTR ERVL 105 178 -4818 3477 348 42 10 chrX 24615065 24617381 -152356759 + HERV16 LTR ERVL 2867 5250 -235 307 319 7 7 chrX 24617403 24617538 -152356602 + HERV16 LTR ERVL 4856 4990 -6 956 259 79 61 chrX 24617542 24617998 -152356142 + LTR16B LTR ERVL 1 464 0 24 0 0 0 chrX 24618927 24618951 -152355189 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 24620009 24620040 -152354100 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 24620279 24620309 -152353831 + AT_rich Low_complexity Low_complexity 1 30 0 404 283 0 0 chrX 24620606 24620712 -152353428 + MER5C DNA MER1_type 13 118 -206 319 183 0 61 chrX 24620855 24620937 -152353203 + MER5C DNA MER1_type 248 324 0 1129 197 22 18 chrX 24620945 24621168 -152352972 + MER58A DNA MER1_type 1 224 0 2544 42 3 6 chrX 24621190 24621502 -152352638 - AluY SINE Alu 0 311 1 560 269 41 12 chrX 24621520 24621762 -152352378 + MER112 DNA MER1_type 12 260 0 27 29 0 0 chrX 24621786 24621820 -152352320 + AT_rich Low_complexity Low_complexity 1 34 0 915 209 25 10 chrX 24622389 24622590 -152351550 + MER63A DNA MER1_type 1 204 -6 3038 197 7 68 chrX 24622690 24623013 -152351127 + MER82 DNA MER2_type 2 262 -391 2437 80 0 3 chrX 24623013 24623325 -152350815 + AluY SINE Alu 1 311 0 3038 197 7 68 chrX 24623325 24623695 -152350445 + MER82 DNA MER2_type 262 653 0 3318 106 23 4 chrX 24623728 24624240 -152349900 - L1MA4 LINE L1 -6 6294 5773 5168 129 10 23 chrX 24624249 24625269 -152348871 - L1PA16 LINE L1 -10 6156 5130 2119 97 30 17 chrX 24625269 24625567 -152348573 - AluSq SINE Alu -11 302 1 5168 129 10 23 chrX 24625567 24626202 -152347938 - L1PA16 LINE L1 -1036 5130 4488 7062 150 15 19 chrX 24626245 24627037 -152347103 - L1MA4 LINE L1 -516 5784 4990 1528 146 100 43 chrX 24627037 24627317 -152346823 - AluJo SINE Alu -16 296 1 7062 150 15 19 chrX 24627317 24628359 -152345781 - L1MA4 LINE L1 -1310 4990 3954 1251 243 39 99 chrX 24628865 24629379 -152344761 + LTR33 LTR ERVL 36 518 -3 1167 270 108 35 chrX 24629488 24630541 -152343599 - L1MC5 LINE L1 -859 7102 5860 306 0 0 0 chrX 24630541 24630575 -152343565 + (TG)n Simple_repeat Simple_repeat 2 35 0 1167 270 108 35 chrX 24630575 24631140 -152343000 - L1MC5 LINE L1 -2101 5860 5338 658 329 36 47 chrX 24631190 24631683 -152342457 - LTR16C LTR ERVL 0 491 4 331 217 0 0 chrX 24632508 24632568 -152341572 - MER81 DNA DNA -2 112 53 530 137 59 39 chrX 24632692 24632794 -152341346 - MER5A DNA MER1_type -77 112 9 2301 95 0 0 chrX 24632882 24633176 -152340964 - AluSx SINE Alu -5 307 14 411 75 0 0 chrX 24633246 24633299 -152340841 - Alu SINE Alu -257 53 1 204 182 0 0 chrX 24634195 24634239 -152339901 + (TA)n Simple_repeat Simple_repeat 1 44 0 29 0 0 0 chrX 24634295 24634324 -152339816 + AT_rich Low_complexity Low_complexity 1 29 0 1470 203 57 21 chrX 24634731 24635145 -152338995 - L1ME1 LINE L1 -8 6158 5736 21 36 0 0 chrX 24635304 24635332 -152338808 + AT_rich Low_complexity Low_complexity 1 28 0 596 174 35 0 chrX 24636415 24636530 -152337610 - MER94 DNA DNA -14 120 2 2356 84 0 19 chrX 24636629 24636938 -152337202 - AluSq SINE Alu -10 303 1 642 273 28 17 chrX 24637009 24637185 -152336955 + MER5B DNA MER1_type 1 178 0 574 296 80 11 chrX 24639419 24639881 -152334259 + L1MEc LINE L1 1257 1750 -4646 598 228 120 46 chrX 24640033 24640274 -152333866 - LTR50 LTR ERVL -150 645 387 2575 161 9 0 chrX 24640421 24640849 -152333291 - MSTB1 LTR MaLR 0 432 1 6256 210 16 6 chrX 24640849 24642110 -152332030 - MSTB1-int LTR MaLR 0 1651 375 1022 47 0 0 chrX 24642110 24642239 -152331901 + L1PA4 LINE L1 6024 6152 -3 477 214 9 0 chrX 24642324 24642436 -152331704 - MER58A DNA MER1_type -17 207 95 234 216 0 0 chrX 24642468 24642519 -152331621 - MER58A DNA MER1_type -9 98 48 2058 174 3 0 chrX 24642529 24642902 -152331238 - MSTB1-int LTR MaLR -1277 374 1 309 115 0 19 chrX 24642902 24642954 -152331186 - MLT2B3 LTR ERVL 0 520 470 1714 183 25 109 chrX 24642991 24643562 -152330578 - MLT2B3 LTR ERVL -40 508 1 589 159 127 0 chrX 24643564 24643690 -152330450 - LTR50 LTR ERVL -649 146 5 419 332 220 15 chrX 24644799 24645744 -152328396 + L2 LINE L2 1623 2761 -553 657 289 68 25 chrX 24646606 24646841 -152327299 - MIR SINE MIR -15 247 3 1405 258 143 15 chrX 24646867 24647328 -152326812 + MLT1E LTR MaLR 11 530 -63 22 35 0 0 chrX 24647328 24647357 -152326783 + AT_rich Low_complexity Low_complexity 1 29 0 1500 126 142 0 chrX 24647381 24647627 -152326513 - AluSx SINE Alu -27 285 5 543 252 9 0 chrX 24648434 24648545 -152325595 - MER81 DNA DNA -2 112 1 233 255 0 0 chrX 24648967 24649014 -152325126 - L3 LINE CR1 -13 1564 1518 402 213 37 19 chrX 24649117 24649225 -152324915 + MER103 DNA DNA 3 112 -54 279 213 27 27 chrX 24649231 24649306 -152324834 + MER5B DNA MER1_type 21 95 -83 2086 158 10 7 chrX 24649361 24649772 -152324368 - L1MA8 LINE L1 -1316 4830 4419 * 5401 126 51 20 chrX 24649766 24650494 -152323646 + L1MA8 LINE L1 4852 5556 -735 2285 93 0 13 chrX 24650494 24650806 -152323334 + AluSc SINE Alu 1 308 -1 5401 126 51 20 chrX 24650806 24651466 -152322674 + L1MA8 LINE L1 5556 6291 0 1907 158 7 0 chrX 24651469 24651760 -152322380 + AluJb SINE Alu 1 293 -19 246 250 0 28 chrX 24651792 24651864 -152322276 + MER103 DNA DNA 91 160 -6 252 167 0 0 chrX 24651871 24651919 -152322221 + CT-rich Low_complexity Low_complexity 1 48 0 844 213 44 41 chrX 24652067 24652382 -152321758 - L1MC5 LINE L1 -35 7926 7611 229 231 15 15 chrX 24652385 24652450 -152321690 - L1M4 LINE L1 -1584 4562 4498 420 261 0 0 chrX 24652634 24652743 -152321397 - L1ME2 LINE L1 -3 6331 6061 240 224 0 0 chrX 24652745 24652794 -152321346 - L1ME2 LINE L1 -55 6109 6061 679 316 68 42 chrX 24653687 24654070 -152320070 - LTR16C LTR ERVL 0 491 99 363 334 102 39 chrX 24654367 24654699 -152319441 + L2 LINE L2 2920 3272 0 1053 223 25 0 chrX 24654829 24655071 -152319069 - MER90 LTR ERV1 0 614 367 610 316 14 5 chrX 24655099 24655317 -152318823 - MER90 LTR ERV1 -386 228 9 373 370 39 0 chrX 24655861 24655988 -152318152 - L2 LINE L2 -5 3267 3136 685 209 329 59 chrX 24656158 24656332 -152317808 - L1MC4 LINE L1 0 8042 7916 3386 85 17 0 chrX 24656332 24656805 -152317335 - L1PB1 LINE L1 0 6151 5671 685 209 329 59 chrX 24656805 24657089 -152317051 - L1MC4 LINE L1 -126 7916 7460 719 222 58 62 chrX 24658122 24658379 -152315761 - MIR SINE MIR 0 262 7 714 172 0 23 chrX 24660141 24660269 -152313871 + FLAM_A SINE Alu 3 127 -6 791 255 81 13 chrX 24660399 24660634 -152313506 - MIR SINE MIR -9 253 3 860 283 78 62 chrX 24660694 24661342 -152312798 + L2 LINE L2 2623 3267 -5 191 331 206 25 chrX 24661391 24661551 -152312589 - L2 LINE L2 -218 3054 2866 279 0 0 0 chrX 24662026 24662057 -152312083 + (CA)n Simple_repeat Simple_repeat 2 32 0 436 194 42 0 chrX 24664732 24664897 -152309243 + (GGGTG)n Simple_repeat Simple_repeat 3 174 0 4845 162 19 10 chrX 24665064 24666755 -152307385 - L1PB4 LINE L1 -3 6153 4450 488 192 100 0 chrX 24666978 24667098 -152307042 - MER94 DNA DNA -2 132 1 502 342 86 5 chrX 24668420 24668642 -152305498 + MIR SINE MIR 14 253 -9 656 286 57 79 chrX 24669132 24669590 -152304550 - LTR16A1 LTR ERVL -2 455 8 619 191 17 0 chrX 24670386 24670501 -152303639 + MER20 DNA MER1_type 1 117 -102 272 65 0 87 chrX 24670725 24670771 -152303369 + MER20 DNA MER1_type 178 219 0 1691 208 76 48 chrX 24670781 24671256 -152302884 - LTR16C LTR ERVL 0 491 4 484 296 13 19 chrX 24671416 24671575 -152302565 - L3 LINE CR1 -21 1556 1399 812 276 46 14 chrX 24671589 24671806 -152302334 + MIR SINE MIR 35 258 -4 317 287 0 50 chrX 24672648 24672749 -152301391 + L1MC4 LINE L1 6608 6703 -1339 * 354 253 23 0 chrX 24672672 24672759 -152301381 - L1MC4 LINE L1 -1340 6702 6614 192 40 0 0 chrX 24672761 24672786 -152301354 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chrX 24673801 24673823 -152300317 + AT_rich Low_complexity Low_complexity 1 22 0 626 290 0 6 chrX 24674546 24674715 -152299425 + LTR16A LTR ERVL 13 180 -270 1067 241 38 73 chrX 24674749 24675144 -152298996 + L2 LINE L2 2933 3313 0 206 250 0 23 chrX 24675238 24675282 -152298858 + MIR SINE MIR 7 49 -213 944 223 67 5 chrX 24675298 24675522 -152298618 - MIR SINE MIR -10 252 15 420 344 88 18 chrX 24675466 24675693 -152298447 + MIR SINE MIR 19 261 -1 * 1325 253 8 83 chrX 24676122 24676333 -152297807 + LTR16A LTR ERVL 16 241 -209 6129 78 24 20 chrX 24676333 24677193 -152296947 + L1PB1 LINE L1 4912 5768 -383 405 0 0 0 chrX 24677193 24677238 -152296902 + (TA)n Simple_repeat Simple_repeat 2 46 0 6129 78 24 20 chrX 24677238 24677483 -152296657 + L1PB1 LINE L1 5768 6023 -128 2138 93 41 3 chrX 24677483 24677773 -152296367 + AluSx SINE Alu 1 301 -11 6129 78 24 20 chrX 24677773 24677902 -152296238 + L1PB1 LINE L1 6023 6150 -1 1325 253 8 83 chrX 24677902 24678160 -152295980 + LTR16A LTR ERVL 241 450 0 2105 100 0 28 chrX 24678857 24679190 -152294950 + AluSx SINE Alu 1 325 0 440 207 118 37 chrX 24680074 24680209 -152293931 + MER5A DNA MER1_type 43 188 -1 1358 188 49 36 chrX 24680442 24680771 -152293369 + LTR16A1 LTR ERVL 68 400 -57 3617 143 60 23 chrX 24680771 24681051 -152293089 + L1MA9 LINE L1 5494 5762 -550 390 21 0 0 chrX 24681051 24681098 -152293042 + (CA)n Simple_repeat Simple_repeat 2 48 0 3617 143 60 23 chrX 24681098 24681552 -152292588 + L1MA9 LINE L1 5762 6255 -57 416 345 42 45 chrX 24681631 24681918 -152292222 + L1MDa LINE L1 2 287 -6253 3848 208 77 58 chrX 24682511 24682829 -152291311 + L1MDa LINE L1 909 1220 -5320 1175 83 6 0 chrX 24682829 24682997 -152291143 + L1MA3 LINE L1 6132 6300 -5 3848 208 77 58 chrX 24682997 24684519 -152289621 + L1MDa LINE L1 1220 2733 -3807 278 257 69 50 chrX 24684871 24684972 -152289168 + MIR SINE MIR 146 248 -14 276 286 143 0 chrX 24686634 24686767 -152287373 + MER117 DNA MER1_type 46 197 0 5983 101 26 1 chrX 24688370 24689393 -152284747 + L1PA15 LINE L1 5120 6164 -1 1195 230 28 62 chrX 24690000 24690144 -152283996 + LTR16C LTR ERVL 146 293 -198 1117 196 48 104 chrX 24690144 24690501 -152283639 - MER58B DNA MER1_type -4 337 1 1195 230 28 62 chrX 24690501 24690581 -152283559 + LTR16C LTR ERVL 293 374 -117 2162 151 0 0 chrX 24690581 24690892 -152283248 - AluJb SINE Alu -1 311 1 1195 230 28 62 chrX 24690892 24691022 -152283118 + LTR16C LTR ERVL 374 489 -2 7190 105 39 8 chrX 24691132 24692303 -152281837 - Tigger3b DNA MER2_type 0 1231 24 249 33 0 0 chrX 24694071 24694101 -152280039 + (CA)n Simple_repeat Simple_repeat 2 31 0 268 255 98 36 chrX 24695001 24695139 -152279001 + L1ME LINE L1 5669 5818 -303 367 202 36 12 chrX 24696151 24696235 -152277905 - MIR3 SINE MIR -1 207 122 1347 153 37 29 chrX 24696252 24696494 -152277646 + AluJo SINE Alu 46 289 -23 2122 136 3 3 chrX 24696527 24696837 -152277303 - AluSx SINE Alu -2 310 1 22 0 0 0 chrX 24696837 24696859 -152277281 + AT_rich Low_complexity Low_complexity 1 22 0 2625 94 3 0 chrX 24696892 24697244 -152276896 - THE1A LTR MaLR -2 353 1 2189 104 0 57 chrX 24697830 24698146 -152275994 - AluSx SINE Alu -14 298 1 477 47 0 0 chrX 24698436 24698500 -152275640 + (TG)n Simple_repeat Simple_repeat 1 64 0 2058 186 104 90 chrX 24699037 24699691 -152274449 - MLT2F LTR ERVL 0 663 1 1629 254 90 35 chrX 24699896 24700460 -152273680 + MLT1G1 LTR MaLR 1 595 0 6951 26 0 0 chrX 24700614 24701460 -152272680 - L1PA3 LINE L1 -2 6153 5308 3735 43 0 0 chrX 24701461 24701946 -152272194 + L1PA3 LINE L1 4802 5286 -860 1546 154 42 14 chrX 24701946 24702232 -152271908 - L1MD2 LINE L1 0 6359 6066 703 165 35 0 chrX 24702232 24702347 -152271793 + FLAM_C SINE Alu 3 121 -22 2442 176 51 41 chrX 24702372 24702936 -152271204 - L1MD1 LINE L1 -165 6077 5508 444 244 17 17 chrX 24703600 24703719 -152270421 - Charlie8 DNA MER1_type -2156 261 143 1136 232 73 6 chrX 24703993 24704320 -152269820 + L1ME2 LINE L1 5305 5653 -509 1655 109 10 58 chrX 24704571 24704865 -152269275 - L1PA13 LINE L1 -3 6160 5881 5771 63 6 4 chrX 24704887 24705676 -152268464 - L1PB1 LINE L1 0 6151 5361 421 171 0 0 chrX 24705676 24705764 -152268376 + L1P LINE L1 5218 5305 -841 * 1796 174 73 59 chrX 24705759 24706077 -152268063 + L1ME2 LINE L1 5625 5954 -210 1706 171 39 0 chrX 24706077 24706197 -152267943 + AluJb SINE Alu 1 115 -197 351 0 0 0 chrX 24706197 24706236 -152267904 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1706 171 39 0 chrX 24706236 24706395 -152267745 + AluJb SINE Alu 115 291 -21 1796 174 73 59 chrX 24706395 24706598 -152267542 + L1ME2 LINE L1 5954 6153 -11 529 309 100 22 chrX 24706843 24707073 -152267067 + MIR SINE MIR 2 249 -13 2255 52 6 0 chrX 24707566 24708040 -152266100 - L1PA5 LINE L1 -597 5557 5081 5084 38 2 0 chrX 24708040 24708645 -152265495 + L1PA5 LINE L1 5547 6153 -1 25 31 0 0 chrX 24709229 24709261 -152264879 + AT_rich Low_complexity Low_complexity 1 32 0 30 59 0 0 chrX 24709478 24709529 -152264611 + AT_rich Low_complexity Low_complexity 1 51 0 258 56 0 0 chrX 24709649 24709685 -152264455 + (TG)n Simple_repeat Simple_repeat 1 36 0 744 31 0 20 chrX 24710380 24710478 -152263662 + L1PA8 LINE L1 6073 6168 -4 215 279 0 0 chrX 24711288 24711349 -152262791 + (CAT)n Simple_repeat Simple_repeat 3 63 0 246 62 0 0 chrX 24712192 24712224 -152261916 + (A)n Simple_repeat Simple_repeat 1 32 0 372 22 0 0 chrX 24713153 24713198 -152260942 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 10724 34 0 0 chrX 24713987 24715343 -152258797 - L1PA3 LINE L1 -1711 4435 3080 8099 23 0 0 chrX 24715343 24717059 -152257081 + L1PA3 LINE L1 4434 6148 -7 431 202 18 2 chrX 24717171 24717334 -152256806 + MER58A DNA MER1_type 25 223 -1 1171 189 23 14 chrX 24717402 24717619 -152256521 - MER20 DNA MER1_type 0 219 1 282 320 20 0 chrX 24719393 24719493 -152254647 - LTR67 LTR ERVL -368 189 88 * 1370 193 34 14 chrX 24719489 24719785 -152254355 - MLT2B3 LTR ERVL -252 302 1 812 283 94 54 chrX 24719786 24720002 -152254138 - MLT1G1 LTR MaLR -25 570 364 1373 204 136 5 chrX 24720002 24720414 -152253726 + MER110A LTR ERV1 3 468 0 812 283 94 54 chrX 24720414 24720703 -152253437 - MLT1G1 LTR MaLR -231 364 1 867 107 14 158 chrX 24720712 24720927 -152253213 - MER6 DNA MER2_type -9 856 673 1242 51 6 0 chrX 24720929 24721087 -152253053 + L1PA6 LINE L1 5987 6145 -9 2438 90 3 0 chrX 24721318 24721630 -152252510 - AluSp SINE Alu 0 313 1 226 187 93 67 chrX 24721775 24721850 -152252290 - L2 LINE L2 -8 3264 3188 907 287 46 51 chrX 24723390 24723547 -152250593 - L1MC4a LINE L1 -1871 5937 5781 2250 89 3 52 chrX 24723547 24723872 -152250268 - AluSg SINE Alu -1 309 1 907 287 46 51 chrX 24723872 24724149 -152249991 - L1MC4a LINE L1 -2027 5781 5505 1140 120 66 46 chrX 24725096 24725188 -152248952 + L1MB3 LINE L1 5938 6027 -156 2009 114 3 31 chrX 24725188 24725501 -152248639 - AluSg SINE Alu 0 305 1 1140 120 66 46 chrX 24725501 24725648 -152248492 + L1MB3 LINE L1 6027 6183 0 362 284 53 11 chrX 24725711 24725806 -152248334 - MIR SINE MIR -110 152 54 397 250 9 56 chrX 24725876 24725984 -152248156 + MIR3 SINE MIR 71 173 -35 263 177 81 0 chrX 24725984 24726046 -152248094 + MER112 DNA MER1_type 13 79 -181 246 62 0 0 chrX 24726046 24726078 -152248062 + (CCA)n Simple_repeat Simple_repeat 1 32 0 917 285 25 28 chrX 24726086 24726409 -152247731 - LTR16A1 LTR ERVL 0 457 136 632 221 0 22 chrX 24726417 24726553 -152247587 + MLT1F1 LTR MaLR 1 133 -409 1781 220 47 22 chrX 24726590 24727035 -152247105 + MLT1F1 LTR MaLR 110 565 -2 304 241 177 0 chrX 24727203 24727344 -152246796 + MER112 DNA MER1_type 90 255 -5 513 223 84 8 chrX 24727411 24727591 -152246549 - MIR SINE MIR 0 262 26 351 0 0 0 chrX 24728977 24729016 -152245124 + (TG)n Simple_repeat Simple_repeat 2 40 0 5224 126 12 1 chrX 24729081 24730518 -152243622 - L1MA3 LINE L1 -270 6035 4585 1840 108 7 3 chrX 24730682 24730978 -152243162 + HERVH LTR ERV1 7417 7713 0 1576 101 45 10 chrX 24730978 24731329 -152242811 + LTR7 LTR ERV1 1 412 -38 1753 234 87 24 chrX 24731389 24731894 -152242246 - MLT1H LTR MaLR 0 549 13 302 221 46 119 chrX 24732144 24732300 -152241840 - LTR33A LTR ERVL -372 151 38 26 0 0 0 chrX 24732833 24732859 -152241281 + AT_rich Low_complexity Low_complexity 1 26 0 620 228 76 6 chrX 24733127 24733285 -152240855 + L2 LINE L2 3145 3313 0 317 241 73 29 chrX 24733299 24733436 -152240704 - L1MC/D LINE L1 -2053 5755 5613 458 224 39 6 chrX 24734248 24734404 -152239736 - L1ME4a LINE L1 -1 6120 5960 488 282 68 18 chrX 24734693 24734856 -152239284 + MER5B DNA MER1_type 1 171 -7 337 344 9 23 chrX 24734869 24735084 -152239056 + L2 LINE L2 2546 2757 -557 2610 130 16 37 chrX 24735178 24735615 -152238525 - MSTC LTR MaLR 0 428 1 1134 285 84 33 chrX 24735822 24736298 -152237842 - L2 LINE L2 0 3313 2798 2220 122 0 0 chrX 24736298 24736593 -152237547 - AluSx SINE Alu -17 295 1 1134 285 84 33 chrX 24736593 24736796 -152237344 - L2 LINE L2 -515 2798 2607 218 324 106 28 chrX 24736847 24737026 -152237114 + L2 LINE L2 2758 2950 -364 1865 189 51 35 chrX 24737051 24737505 -152236635 - L1MB5 LINE L1 -15 6159 5699 1856 151 28 100 chrX 24737575 24738073 -152236067 - MLT1C LTR MaLR -5 462 1 284 289 8 58 chrX 24738077 24738198 -152235942 - MER5A DNA MER1_type -53 136 22 615 219 0 0 chrX 24738199 24738313 -152235827 - MER81 DNA DNA 0 114 1 451 288 59 12 chrX 24738793 24738963 -152235177 + MER5B DNA MER1_type 1 178 0 3248 143 28 5 chrX 24739383 24739963 -152234177 - L1MB7 LINE L1 -16 6168 5576 231 133 0 0 chrX 24740547 24740592 -152233548 + (CCTCG)n Simple_repeat Simple_repeat 5 49 0 255 31 0 0 chrX 24740762 24740794 -152233346 + (CCCCG)n Simple_repeat Simple_repeat 1 32 0 230 0 0 32 chrX 24740817 24740848 -152233292 + (CCG)n Simple_repeat Simple_repeat 1 30 0 306 73 0 0 chrX 24741870 24741911 -152232229 + (GGA)n Simple_repeat Simple_repeat 1 41 0 409 179 0 12 chrX 24743207 24743291 -152230849 - L1MB8 LINE L1 -1 6177 6095 3569 178 40 32 chrX 24743335 24744371 -152229769 - L1MB8 LINE L1 -75 6103 5058 312 214 54 0 chrX 24744430 24744486 -152229654 + L2 LINE L2 3246 3304 -9 2228 79 0 4 chrX 24744535 24744841 -152229299 - AluSc SINE Alu 0 305 1 1034 171 26 0 chrX 24745134 24745327 -152228813 + MER20 DNA MER1_type 3 200 -19 216 67 0 0 chrX 24745748 24745778 -152228362 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 23 33 0 0 chrX 24746000 24746030 -152228110 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 24746388 24746417 -152227723 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 6 0 chrX 24746509 24746871 -152227269 - THE1B LTR MaLR 0 364 1 4297 238 118 37 chrX 24746987 24749139 -152225001 - HAL1 LINE L1 -139 2368 1 591 58 0 23 chrX 24750299 24750386 -152223754 - L1PB4 LINE L1 -4 6152 6068 491 262 58 23 chrX 24750570 24750742 -152223398 - MER5B DNA MER1_type 0 178 1 342 310 35 28 chrX 24750951 24751093 -152223047 - MER5A DNA MER1_type -18 171 29 429 253 95 32 chrX 24752222 24752380 -152221760 + MIR SINE MIR 24 191 -71 200 274 0 0 chrX 24752463 24752514 -152221626 + L2 LINE L2 3263 3313 0 3550 161 38 1 chrX 24752738 24753404 -152220736 - L1MC3 LINE L1 -1 7784 7095 488 365 67 6 chrX 24753594 24753959 -152220181 + L1M4 LINE L1 4184 4570 -1576 2629 209 48 22 chrX 24754125 24754703 -152219437 + MLT1E LTR MaLR 1 593 0 225 316 102 0 chrX 24754710 24754954 -152219186 + L1M4 LINE L1 4758 5026 -1120 24 67 0 0 chrX 24755030 24755075 -152219065 + AT_rich Low_complexity Low_complexity 1 45 0 235 145 53 105 chrX 24755208 24755284 -152218856 - MER5C DNA MER1_type -252 72 1 1084 177 70 33 chrX 24755293 24755508 -152218632 - MER58A DNA MER1_type -1 223 1 842 126 116 5 chrX 24755662 24755852 -152218288 + MER33 DNA MER1_type 43 253 -71 215 381 37 0 chrX 24756408 24756542 -152217598 - L2 LINE L2 -846 2468 2330 2787 15 15 0 chrX 24756812 24757136 -152217004 + L1PA4 LINE L1 5827 6155 0 347 269 8 0 chrX 24758135 24758265 -152215875 + (TA)n Simple_repeat Simple_repeat 1 131 0 2096 92 35 21 chrX 24758611 24758895 -152215245 + AluSx SINE Alu 1 288 -24 1088 161 150 0 chrX 24759392 24759585 -152214555 + MER58A DNA MER1_type 2 223 -1 411 298 46 0 chrX 24759954 24760085 -152214055 - MIR SINE MIR -15 247 111 2658 63 22 17 chrX 24760554 24760916 -152213224 - THE1B LTR MaLR 0 364 1 211 367 25 0 chrX 24762535 24762614 -152211526 + L2 LINE L2 2971 3051 -221 481 254 202 48 chrX 24762752 24763024 -152211116 - L2 LINE L2 -3 3310 2997 2489 90 0 0 chrX 24763255 24763565 -152210575 - AluY SINE Alu 0 311 2 302 278 38 60 chrX 24763968 24764101 -152210039 - L1ME3A LINE L1 -36 6134 6005 679 240 173 8 chrX 24764241 24764716 -152209424 - L1ME3A LINE L1 -217 5947 5359 32 106 0 0 chrX 24764794 24764917 -152209223 + AT_rich Low_complexity Low_complexity 1 123 0 1845 173 62 37 chrX 24764926 24765352 -152208788 + MSTB1 LTR MaLR 1 375 0 1169 178 0 23 chrX 24766316 24766535 -152207605 + MER20 DNA MER1_type 6 219 0 435 214 0 0 chrX 24766694 24766778 -152207362 - L1ME1 LINE L1 -22 6213 6130 385 283 148 12 chrX 24768529 24768861 -152205279 - L1ME1 LINE L1 -195 5995 5619 258 224 79 0 chrX 24769343 24769419 -152204721 - L1ME1 LINE L1 -2316 3899 3818 1192 171 43 14 chrX 24769423 24769634 -152204506 - AluJo SINE Alu -12 300 84 3971 241 51 57 chrX 24769637 24771177 -152202963 - L1ME1 LINE L1 -2391 3824 2276 2296 120 120 5 chrX 24771177 24771560 -152202580 - MSTA LTR MaLR 0 428 2 3971 241 51 57 chrX 24771560 24772037 -152202103 - L1ME1 LINE L1 -3939 2276 1797 313 62 0 0 chrX 24772037 24772085 -152202055 - L1MA3 LINE L1 0 6305 6258 3971 241 51 57 chrX 24772085 24772673 -152201467 - L1ME1 LINE L1 -4418 1797 1256 2292 168 70 131 chrX 24772662 24772815 -152201325 - L1MC4a LINE L1 -1077 6731 6570 * 1736 197 49 21 chrX 24772815 24773200 -152200940 + MSTD LTR MaLR 1 396 0 2292 168 70 131 chrX 24773200 24773483 -152200657 - L1MC4a LINE L1 -1238 6570 6271 218 56 28 0 chrX 24773483 24773519 -152200621 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2292 168 70 131 chrX 24773519 24773990 -152200150 - L1MC4a LINE L1 -1537 6271 5878 534 203 6 80 chrX 24774037 24774200 -152199940 - L1MA9 LINE L1 -29 6283 6133 * 1013 228 39 17 chrX 24774197 24774506 -152199634 - L1MC4a LINE L1 -356 5818 5586 526 207 170 7 chrX 24775928 24776063 -152198077 + MER5A DNA MER1_type 32 188 -1 3259 207 5 15 chrX 24776402 24777060 -152197080 - MER82 DNA MER2_type -1 652 2 186 357 71 0 chrX 24777856 24777926 -152196214 + L2 LINE L2 3142 3216 -56 294 253 13 0 chrX 24778315 24778390 -152195750 + L1ME LINE L1 5785 5860 -310 456 253 106 46 chrX 24780997 24781357 -152192783 - MLT1H LTR MaLR -8 541 96 421 251 100 80 chrX 24781645 24781932 -152192208 + L1M4 LINE L1 5111 5427 -694 520 279 66 0 chrX 24781985 24782168 -152191972 - L2 LINE L2 -198 3115 2921 3652 159 68 9 chrX 24782280 24783090 -152191050 + L1MB7 LINE L1 5182 6037 -147 218 140 35 0 chrX 24783127 24783184 -152190956 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 6586 16 4 0 chrX 24783188 24783977 -152190163 - L1PA3 LINE L1 -3 6152 5361 13134 22 0 0 chrX 24783978 24785592 -152188548 + L1PA3 LINE L1 3745 5358 -788 662 272 23 0 chrX 24786766 24786939 -152187201 - MER5A DNA MER1_type -1 188 12 459 67 17 0 chrX 24787529 24787589 -152186551 + U7 snRNA snRNA 2 62 -1 26 0 0 0 chrX 24787595 24787621 -152186519 + AT_rich Low_complexity Low_complexity 1 26 0 31 68 0 0 chrX 24787898 24787957 -152186183 + AT_rich Low_complexity Low_complexity 1 59 0 355 285 218 14 chrX 24788026 24788457 -152185683 - L1ME4a LINE L1 -82 6039 5521 384 178 0 0 chrX 24788899 24788972 -152185168 + (TA)n Simple_repeat Simple_repeat 2 74 0 959 249 41 16 chrX 24789431 24789676 -152184464 - MIR SINE MIR -10 252 2 871 182 36 0 chrX 24789788 24789953 -152184187 + MER5B DNA MER1_type 7 177 -1 231 273 40 30 chrX 24791143 24791242 -152182898 - L1ME3A LINE L1 -106 6064 5965 3418 230 139 28 chrX 24791814 24793503 -152180637 - HAL1 LINE L1 -629 1878 3 402 296 216 5 chrX 24793578 24793777 -152180363 - MIR SINE MIR -12 250 10 22 0 0 0 chrX 24795020 24795042 -152179098 + AT_rich Low_complexity Low_complexity 1 22 0 405 237 149 9 chrX 24795226 24795356 -152178784 + MIR SINE MIR 3 150 -62 1129 195 43 17 chrX 24795460 24795691 -152178449 - MIR SINE MIR -17 245 9 1512 36 31 5 chrX 24795777 24795969 -152178171 + MER107 DNA MER1_type 1 197 0 711 184 163 11 chrX 24796290 24796480 -152177660 - MER58A DNA MER1_type 0 224 6 1098 184 134 25 chrX 24796533 24796898 -152177242 - LTR37A LTR ERV1 0 426 22 260 371 0 9 chrX 24796905 24797021 -152177119 - MER5A DNA MER1_type -74 115 1 422 210 74 0 chrX 24800180 24800261 -152173879 + L2 LINE L2 3169 3255 -17 1257 197 58 52 chrX 24801592 24801901 -152172239 + AluJo SINE Alu 1 311 -1 864 265 168 20 chrX 24802682 24802909 -152171231 + L2 LINE L2 1976 2168 -1146 473 96 12 48 chrX 24802909 24802992 -152171148 - MADE1 DNA Mariner 0 80 1 864 265 168 20 chrX 24802992 24803115 -152171025 + L2 LINE L2 2168 2378 -936 937 179 18 12 chrX 24804069 24804237 -152169903 - MER5B DNA MER1_type -2 176 8 198 337 12 12 chrX 24804530 24804613 -152169527 - MIR SINE MIR -166 96 14 839 206 69 0 chrX 24804613 24804802 -152169338 + MLT1J2 LTR MaLR 1 202 -248 314 326 159 25 chrX 24804972 24805325 -152168815 - L2 LINE L2 -1697 1617 1218 344 301 43 0 chrX 24805331 24805424 -152168716 + L2 LINE L2 3172 3268 -4 * 687 301 149 41 chrX 24805409 24805967 -152168173 - L2 LINE L2 -2380 934 317 275 302 64 62 chrX 24806211 24806507 -152167633 - MLT1H LTR MaLR -209 340 8 226 219 167 10 chrX 24806697 24806793 -152167347 + MIR SINE MIR 102 212 -50 222 105 0 0 chrX 24807650 24807688 -152166452 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 593 175 43 13 chrX 24808331 24808547 -152165593 - MER33 DNA MER1_type 0 324 23 1275 198 206 11 chrX 24810684 24811048 -152163092 - MER101 LTR ERV1 -32 442 8 398 315 159 43 chrX 24812213 24812489 -152161651 - L3 LINE CR1 -31 1546 1239 640 280 124 9 chrX 24814943 24815168 -152158972 - MIR SINE MIR -1 261 11 306 0 0 0 chrX 24815389 24815423 -152158717 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1983 109 72 7 chrX 24815975 24816268 -152157872 - AluSx SINE Alu 0 312 1 636 249 83 10 chrX 24817657 24817862 -152156278 - MER112 DNA MER1_type -40 220 1 636 246 42 37 chrX 24818485 24818676 -152155464 - MIR SINE MIR -15 247 56 229 230 106 115 chrX 24819706 24819819 -152154321 - MIR SINE MIR -123 139 28 472 255 174 19 chrX 24820198 24820410 -152153730 - MIR SINE MIR -11 251 7 215 208 222 0 chrX 24821024 24821096 -152153044 - MIR SINE MIR -91 171 84 216 329 29 57 chrX 24821660 24821800 -152152340 - L2 LINE L2 -18 3295 3160 877 242 45 18 chrX 24822016 24822239 -152151901 + MIR SINE MIR 13 241 -21 2287 68 0 31 chrX 24822868 24823192 -152150948 + AluY SINE Alu 1 315 0 640 192 8 25 chrX 24823933 24824053 -152150087 + MIR3 SINE MIR 46 163 -45 792 277 32 36 chrX 24824063 24824316 -152149824 - MIR SINE MIR -1 261 10 554 147 105 11 chrX 24824737 24824832 -152149308 + FLAM_A SINE Alu 16 119 -23 21 36 0 0 chrX 24825137 24825165 -152148975 + AT_rich Low_complexity Low_complexity 1 28 0 1014 87 0 0 chrX 24826603 24826730 -152147410 - AluSq/x SINE Alu -185 127 1 195 356 68 25 chrX 24826811 24826929 -152147211 - L2 LINE L2 -12 3301 3179 292 341 43 7 chrX 24827271 24827454 -152146686 + MIR SINE MIR 1 190 -63 251 282 118 27 chrX 24827643 24827753 -152146387 - L1ME2 LINE L1 -99 6065 5946 1736 158 4 11 chrX 24827787 24828065 -152146075 - AluJo SINE Alu -36 276 1 1175 126 18 0 chrX 24828084 24828251 -152145889 + AluSp SINE Alu 134 303 -10 28 61 0 0 chrX 24828323 24828372 -152145768 + AT_rich Low_complexity Low_complexity 1 49 0 213 39 0 0 chrX 24830361 24830387 -152143753 + (TA)n Simple_repeat Simple_repeat 1 26 0 2346 68 0 10 chrX 24830497 24830789 -152143351 + AluY SINE Alu 1 289 -22 215 324 29 20 chrX 24830861 24830963 -152143177 - L2 LINE L2 -218 3054 2952 521 170 11 11 chrX 24831747 24831841 -152142299 - L3 LINE CR1 -148 1429 1336 359 277 13 50 chrX 24832334 24832493 -152141647 + MIR SINE MIR 2 154 -108 1259 8 0 0 chrX 24833084 24833218 -152140922 - L1PA5 LINE L1 -5 6149 6016 286 221 12 58 chrX 24833502 24833588 -152140552 + MIR SINE MIR 164 245 -17 974 247 206 12 chrX 24833959 24834587 -152139553 - L2 LINE L2 0 3313 2551 194 320 117 0 chrX 24836927 24837030 -152137110 - MIR3 SINE MIR -3 205 91 1932 148 3 10 chrX 24837502 24837793 -152136347 - AluJo SINE Alu -23 289 1 375 89 0 0 chrX 24838312 24838368 -152135772 + (CA)n Simple_repeat Simple_repeat 1 56 0 627 299 0 17 chrX 24838787 24838961 -152135179 - MIR3 SINE MIR -15 193 23 864 160 0 8 chrX 24838978 24839109 -152135031 - FLAM_A SINE Alu -3 130 1 2325 107 0 19 chrX 24839128 24839446 -152134694 - AluSx SINE Alu 0 312 1 21 36 0 0 chrX 24839581 24839609 -152134531 + AT_rich Low_complexity Low_complexity 1 28 0 180 297 99 27 chrX 24842124 24842235 -152131905 - MIR3 SINE MIR -3 205 87 3736 71 31 2 chrX 24842349 24842466 -152131674 + L1PB1 LINE L1 5660 5772 -379 399 21 0 0 chrX 24842466 24842514 -152131626 + (CA)n Simple_repeat Simple_repeat 2 49 0 3736 71 31 2 chrX 24842514 24842873 -152131267 + L1PB1 LINE L1 5772 6150 -1 237 275 116 0 chrX 24843580 24843649 -152130491 - L2 LINE L2 -22 3250 3174 2485 74 0 6 chrX 24845903 24846214 -152127926 - AluY SINE Alu -2 309 1 24 32 0 0 chrX 24846696 24846727 -152127413 + AT_rich Low_complexity Low_complexity 1 31 0 426 239 34 62 chrX 24847138 24847314 -152126826 + MER5B DNA MER1_type 4 174 -4 247 317 65 41 chrX 24847438 24847561 -152126579 + MIR3 SINE MIR 74 199 -9 2473 139 76 9 chrX 24847820 24848266 -152125874 - L1MA6 LINE L1 -345 5955 5480 1894 116 51 14 chrX 24848266 24848557 -152125583 + L1MA6 LINE L1 5996 6298 -2 324 299 120 22 chrX 24848587 24848771 -152125369 - MIR SINE MIR -30 232 31 552 324 43 51 chrX 24849896 24850248 -152123892 + L3 LINE CR1 1071 1419 -158 1599 171 7 24 chrX 24851075 24851362 -152122778 + AluJb SINE Alu 1 282 -30 31 0 0 0 chrX 24851623 24851654 -152122486 + AT_rich Low_complexity Low_complexity 1 31 0 2088 130 0 16 chrX 24852679 24852987 -152121153 - AluSx SINE Alu -9 303 1 357 207 86 26 chrX 24854263 24854379 -152119761 - L1MC4 LINE L1 -2 8040 7918 1202 151 11 0 chrX 24854384 24854563 -152119577 - MER58A DNA MER1_type -2 222 42 686 275 63 10 chrX 24856434 24856641 -152117499 + MIR SINE MIR 13 230 -32 530 255 15 90 chrX 24858136 24858336 -152115804 - MER5A DNA MER1_type -1 188 4 299 112 0 3 chrX 24858832 24859055 -152115085 + AluSx SINE Alu 1 300 0 1408 101 10 5 chrX 24859241 24859440 -152114700 + L1PA13 LINE L1 5945 6144 -19 405 0 0 0 chrX 24859854 24859899 -152114241 + (TC)n Simple_repeat Simple_repeat 2 46 0 242 209 215 25 chrX 24860194 24860357 -152113783 + L1MC5 LINE L1 7724 7917 -44 26 30 0 0 chrX 24861490 24861523 -152112617 + AT_rich Low_complexity Low_complexity 1 33 0 411 246 33 8 chrX 24861669 24861791 -152112349 - L1ME3A LINE L1 -5 6165 6041 307 309 87 8 chrX 24864519 24864645 -152109495 + MIR SINE MIR 50 185 -77 1888 139 0 0 chrX 24864652 24864911 -152109229 + AluSx SINE Alu 1 259 -53 371 206 0 0 chrX 24864922 24864985 -152109155 - MER2 DNA MER2_type -1 344 282 1338 143 0 0 chrX 24865013 24865223 -152108917 - MER2 DNA MER2_type -135 210 1 300 269 50 35 chrX 24865728 24865869 -152108271 + MER5A DNA MER1_type 24 166 -23 * 809 182 0 7 chrX 24865748 24865891 -152108249 - MER5A DNA MER1_type -35 154 13 34 0 0 0 chrX 24866825 24866859 -152107281 + AT_rich Low_complexity Low_complexity 1 34 0 2104 214 87 44 chrX 24869464 24870174 -152103966 - L1ME3 LINE L1 -1 6161 5421 534 206 94 0 chrX 24870337 24870497 -152103643 - L1ME3 LINE L1 -777 5369 5195 932 170 0 0 chrX 24870767 24870946 -152103194 + FRAM SINE Alu 1 178 0 231 276 26 0 chrX 24871144 24871220 -152102920 - MER5B DNA MER1_type -100 78 1 482 284 183 29 chrX 24871475 24872413 -152101727 - L1ME3 LINE L1 -2762 3384 2302 2114 165 59 63 chrX 24873046 24873556 -152100584 - LTR54 LTR ERV1 -2 508 1 226 291 55 55 chrX 24873759 24873869 -152100271 + L2 LINE L2 3163 3272 0 22 35 0 0 chrX 24874365 24874394 -152099746 + AT_rich Low_complexity Low_complexity 1 29 0 1359 253 113 34 chrX 24874625 24875120 -152099020 - MLT1F LTR MaLR -8 534 1 2332 106 0 6 chrX 24875245 24875557 -152098583 - AluSg SINE Alu 0 310 1 219 151 0 57 chrX 24875633 24875686 -152098454 + T-rich Low_complexity Low_complexity 6 55 0 235 269 120 65 chrX 24876011 24876119 -152098021 + L3 LINE CR1 1091 1204 -373 253 358 68 11 chrX 24876195 24876371 -152097769 + L2 LINE L2 2110 2295 -1019 3829 101 39 17 chrX 24876490 24877077 -152097063 - LTR43 LTR ERV1 0 602 3 390 240 12 146 chrX 24877105 24877276 -152096864 - L2 LINE L2 -3 3310 3163 1689 152 39 23 chrX 24877794 24877932 -152096208 - LTR23 LTR ERV1 0 467 333 1861 134 0 36 chrX 24877932 24878238 -152095902 - AluJb SINE Alu -17 295 1 1689 152 39 23 chrX 24878238 24878527 -152095613 - LTR23 LTR ERV1 -134 333 1 460 236 170 24 chrX 24878588 24878753 -152095387 + MER5A DNA MER1_type 1 189 0 477 155 23 41 chrX 24878768 24878889 -152095251 - MER5B DNA MER1_type 0 178 1 199 273 18 0 chrX 24879028 24879083 -152095057 + L3b LINE CR1 1244 1299 -284 1701 157 20 14 chrX 24879607 24879901 -152094239 + AluJb SINE Alu 1 296 -16 4792 127 20 1 chrX 24880326 24881034 -152093106 + MER72 LTR ERV1 2 722 0 1720 229 51 14 chrX 24883274 24883781 -152090359 + L1ME3 LINE L1 5634 6159 -3 2857 153 59 41 chrX 24883800 24884294 -152089846 + L1MA9 LINE L1 5469 5978 -334 1782 151 46 3 chrX 24884294 24884579 -152089561 + AluSx SINE Alu 1 297 -15 2857 153 59 41 chrX 24884579 24884712 -152089428 + L1MA9 LINE L1 5978 6107 -205 852 112 0 9 chrX 24884719 24884835 -152089305 + FLAM_C SINE Alu 9 123 -20 1207 119 5 5 chrX 24884835 24885045 -152089095 + L1MA9 LINE L1 6092 6301 -11 303 299 51 51 chrX 24885407 24885564 -152088576 + MIR3 SINE MIR 34 190 -18 297 0 0 0 chrX 24885729 24885762 -152088378 + (CA)n Simple_repeat Simple_repeat 1 33 0 3209 218 23 38 chrX 24886050 24886334 -152087806 + L1ME1 LINE L1 45 332 -6064 1558 102 27 4 chrX 24886334 24886559 -152087581 + MER30 DNA MER1_type 1 230 0 3209 218 23 38 chrX 24886559 24886911 -152087229 + L1ME1 LINE L1 332 665 -5731 1695 182 47 3 chrX 24886911 24887208 -152086932 + AluJo SINE Alu 1 310 -2 3209 218 23 38 chrX 24887208 24887485 -152086655 + L1ME1 LINE L1 665 945 -5451 965 206 0 0 chrX 24887517 24887687 -152086453 - FAM SINE Alu -5 170 1 4263 235 43 33 chrX 24887688 24888570 -152085570 + L1ME1 LINE L1 1311 2182 -4033 877 206 12 24 chrX 24888570 24888740 -152085400 + FAM SINE Alu 1 168 -7 4263 235 43 33 chrX 24888740 24889285 -152084855 + L1ME1 LINE L1 2182 2720 -3495 1795 142 3 48 chrX 24889285 24889595 -152084545 - AluJb SINE Alu -16 296 1 4263 235 43 33 chrX 24889595 24890284 -152083856 + L1ME1 LINE L1 2720 3413 -2802 1632 132 18 0 chrX 24890284 24890504 -152083636 - AluSx SINE Alu -26 286 63 4263 235 43 33 chrX 24890504 24890984 -152083156 + L1ME1 LINE L1 3413 3887 -2328 563 223 14 0 chrX 24890983 24891122 -152083018 + L1ME1 LINE L1 4168 4308 -1907 * 3063 211 61 20 chrX 24891155 24891514 -152082626 + L1ME1 LINE L1 4408 4751 -1484 2329 64 3 10 chrX 24891514 24891827 -152082313 + L1PA8 LINE L1 5860 6170 -2 3063 211 61 20 chrX 24891827 24893140 -152081000 + L1ME1 LINE L1 4751 6219 -16 902 174 11 22 chrX 24893149 24893333 -152080807 + L1MB7 LINE L1 5620 5801 -383 1688 139 21 0 chrX 24893333 24893621 -152080519 + MER47A DNA MER2_type 1 294 -72 6709 35 4 0 chrX 24893622 24894462 -152079678 - L1PA5 LINE L1 -5 6149 5307 1817 130 58 20 chrX 24894462 24894775 -152079365 - AluSx SINE Alu 0 312 1 416 232 0 0 chrX 24894775 24894857 -152079283 + MER47A DNA MER2_type 285 366 0 1612 169 57 30 chrX 24894857 24895224 -152078916 + L1MB7 LINE L1 5800 6176 -8 408 201 69 42 chrX 24895590 24895734 -152078406 - L1ME3A LINE L1 -5 6165 6018 2554 157 37 2 chrX 24895763 24896228 -152077912 - L1MB2 LINE L1 -8 6163 5683 724 228 92 48 chrX 24896249 24896499 -152077641 - MIR SINE MIR 0 262 2 246 287 327 0 chrX 24898110 24898211 -152075929 - L2 LINE L2 -5 3267 3134 239 143 0 0 chrX 24898400 24898442 -152075698 + AluSq SINE Alu 1 42 -257 5410 107 2 14 chrX 24898442 24899231 -152074909 - LTR17 LTR ERV1 0 780 1 1729 80 57 42 chrX 24899231 24899494 -152074646 + AluSq SINE Alu 39 305 -8 517 334 98 41 chrX 24899751 24900204 -152073936 - L2 LINE L2 -607 2707 2208 1627 95 0 5 chrX 24900204 24900414 -152073726 - AluSg/x SINE Alu -18 292 84 517 334 98 41 chrX 24900414 24900574 -152073566 - L2 LINE L2 -1106 2208 2059 190 301 131 78 chrX 24900652 24900987 -152073153 - L2 LINE L2 -2 3270 2918 613 294 82 45 chrX 24901655 24902080 -152072060 + L1MC/D LINE L1 5280 5720 -2088 2221 99 0 0 chrX 24902652 24902976 -152071164 + AluSx SINE Alu 1 324 0 803 125 0 9 chrX 24902991 24903103 -152071037 + FLAM_A SINE Alu 8 118 -24 2351 81 7 0 chrX 24903480 24903775 -152070365 + AluSp SINE Alu 2 298 -15 3172 27 3 0 chrX 24903890 24904265 -152069875 + L1PA4 LINE L1 5779 6154 -1 383 320 80 20 chrX 24904593 24904793 -152069347 + L2 LINE L2 2874 3085 -187 473 133 152 9 chrX 24905250 24905355 -152068785 + MER61A LTR ERV1 1 120 -223 463 81 0 54 chrX 24905354 24905428 -152068712 + MER61A LTR ERV1 274 343 0 * 2763 174 73 24 chrX 24905428 24906095 -152068045 + MER61A-int LTR ERV1 1 700 -4517 18146 99 19 16 chrX 24906135 24906707 -152067433 + MER61A-int LTR ERV1 1320 1889 -3328 2450 77 0 0 chrX 24906707 24907005 -152067135 - AluSg SINE Alu -12 298 1 18146 99 19 16 chrX 24907005 24910086 -152064054 + MER61A-int LTR ERV1 1889 5216 -1 1226 160 167 23 chrX 24910086 24910386 -152063754 + MER61A LTR ERV1 1 343 0 359 219 0 42 chrX 24910848 24910944 -152063196 + HsTC2 DNA Tc2 1 92 -1806 241 261 0 0 chrX 24910962 24911031 -152063109 + HsTC2 DNA Tc2 1723 1791 -107 1163 268 132 21 chrX 24911230 24911707 -152062433 + L1MC4a LINE L1 5320 5849 -1959 34 0 0 0 chrX 24911861 24911895 -152062245 + AT_rich Low_complexity Low_complexity 1 34 0 644 339 49 37 chrX 24912979 24913608 -152060532 + L1MEd LINE L1 12 648 -5471 256 217 72 24 chrX 24913629 24913712 -152060428 + MLT1H1 LTR MaLR 9 95 -495 801 257 135 52 chrX 24913767 24914210 -152059930 + MLT1H1 LTR MaLR 76 555 0 1301 225 89 66 chrX 24914358 24914831 -152059309 + L1MC4a LINE L1 5455 5945 -1863 2065 145 3 0 chrX 24914831 24915141 -152058999 + AluSx SINE Alu 1 311 -1 1301 225 89 66 chrX 24915141 24915231 -152058909 + L1MC4a LINE L1 5945 6031 -1777 613 254 124 28 chrX 24915351 24915732 -152058408 + L1MEd LINE L1 917 1236 -4886 377 268 148 78 chrX 24915732 24916145 -152057995 + HAL1b LINE L1 391 830 -518 2614 42 0 3 chrX 24916253 24916564 -152057576 + AluY SINE Alu 1 310 -1 206 351 0 0 chrX 24916625 24916739 -152057401 + A-rich Low_complexity Low_complexity 1 114 0 481 334 51 10 chrX 24916819 24917328 -152056812 + L1MEd LINE L1 2218 2747 -3382 1043 167 0 0 chrX 24917531 24917687 -152056453 - FRAM SINE Alu -16 160 5 389 333 57 29 chrX 24918799 24919045 -152055095 - MIR SINE MIR 0 262 10 184 409 88 7 chrX 24919321 24919458 -152054682 - L2 LINE L2 -9 3263 3116 186 43 0 0 chrX 24919859 24919882 -152054258 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chrX 24920011 24920046 -152054094 + AT_rich Low_complexity Low_complexity 1 35 0 492 106 0 0 chrX 24920264 24920349 -152053791 + L1MA7 LINE L1 6205 6289 -2 875 141 11 45 chrX 24920457 24920634 -152053506 - L1PA15 LINE L1 -3 6162 5992 216 200 0 0 chrX 24920644 24920689 -152053451 + T-rich Low_complexity Low_complexity 1 45 0 * 362 73 0 18 chrX 24920688 24920743 -152053397 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1677 189 30 3 chrX 24920745 24921047 -152053093 - AluSx SINE Alu -2 310 1 5229 145 3 3 chrX 24921048 24922574 -152051566 - L1PA15 LINE L1 -126 6039 4513 3700 191 21 0 chrX 24922571 24923320 -152050820 + L1P LINE L1 3492 4256 -1890 * 704 142 0 8 chrX 24923320 24923440 -152050700 - MLT1A1 LTR MaLR -246 119 1 3683 113 31 17 chrX 24923698 24924276 -152049864 + L1PA16 LINE L1 5572 6157 -9 1765 170 3 7 chrX 24924377 24924671 -152049469 + AluJo SINE Alu 5 297 -15 1200 76 0 199 chrX 24924695 24924814 -152049326 - MLT2A1 LTR ERVL 0 444 415 2318 63 3 0 chrX 24924814 24925098 -152049042 - AluY SINE Alu -26 285 1 1200 76 0 199 chrX 24925098 24925269 -152048871 - MLT2A1 LTR ERVL -29 415 212 8334 50 12 0 chrX 24925269 24926335 -152047805 - HERVL LTR ERVL -1562 4092 3014 247 176 0 20 chrX 24927509 24927560 -152046580 + MLT1J2 LTR MaLR 77 126 -324 * 1068 234 89 23 chrX 24927527 24927921 -152046219 + MLT1L LTR MaLR 196 615 0 756 250 60 8 chrX 24929993 24930241 -152043899 - LTR33A LTR ERVL -27 496 236 1500 218 65 79 chrX 24930272 24930767 -152043373 - MLT1F1 LTR MaLR -5 562 75 750 170 33 71 chrX 24930816 24930909 -152043231 - MER69A DNA AcHobo -2351 175 91 1875 192 40 14 chrX 24930909 24931330 -152042810 + L1MB8 LINE L1 5747 6178 0 750 170 33 71 chrX 24931330 24931418 -152042722 - MER69A DNA AcHobo -2435 91 1 499 249 142 10 chrX 24931420 24931617 -152042523 - LTR33A LTR ERVL -292 231 9 2004 242 61 54 chrX 24932015 24932903 -152041237 + MER97a DNA MER1_type? 1 894 0 359 259 0 0 chrX 24932929 24933014 -152041126 - MIR SINE MIR -126 136 52 627 238 65 12 chrX 24933045 24933213 -152040927 - MIR SINE MIR -54 208 32 738 196 31 57 chrX 24934633 24934827 -152039313 + MER5A DNA MER1_type 1 189 0 314 331 94 36 chrX 24935099 24935428 -152038712 + L2 LINE L2 2127 2474 -840 326 346 79 12 chrX 24936423 24936677 -152037463 - LTR16C LTR ERVL -220 271 1 236 345 17 0 chrX 24936833 24936952 -152037188 + L2 LINE L2 2934 3054 -218 186 273 36 0 chrX 24937360 24937415 -152036725 - L3b LINE CR1 -336 1247 1191 3000 75 0 0 chrX 24938047 24938422 -152035718 + THE1C LTR MaLR 1 375 0 343 246 42 34 chrX 24938505 24938623 -152035517 - MER5A DNA MER1_type 0 189 71 316 161 25 0 chrX 24938695 24938776 -152035364 + (TA)n Simple_repeat Simple_repeat 1 83 0 234 62 0 0 chrX 24938851 24938883 -152035257 + (CA)n Simple_repeat Simple_repeat 2 33 0 249 108 0 0 chrX 24938940 24938977 -152035163 + (TG)n Simple_repeat Simple_repeat 2 38 0 552 180 107 0 chrX 24938987 24939109 -152035031 - LTR16C LTR ERVL -3 488 354 276 345 77 30 chrX 24939171 24939339 -152034801 - LTR16C LTR ERVL -315 176 1 2506 54 0 0 chrX 24940970 24941267 -152032873 + AluY SINE Alu 3 299 -12 198 167 0 0 chrX 24941769 24941805 -152032335 + GA-rich Low_complexity Low_complexity 3 38 0 1996 66 4 0 chrX 24941831 24942143 -152031997 + AluSx SINE Alu 39 351 0 26 74 0 0 chrX 24942885 24942939 -152031201 + AT_rich Low_complexity Low_complexity 1 54 0 207 224 17 0 chrX 24943036 24943094 -152031046 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 1151 142 0 0 chrX 24943226 24943388 -152030752 + FRAM SINE Alu 2 163 -13 25 0 0 0 chrX 24943800 24943825 -152030315 + AT_rich Low_complexity Low_complexity 1 25 0 2151 31 0 4 chrX 24944023 24944313 -152029827 - L1PA3 LINE L1 0 6155 5902 1769 140 0 7 chrX 24944315 24944593 -152029547 + AluSx SINE Alu 1 276 -36 1561 112 31 0 chrX 24944869 24945092 -152029048 + MER30 DNA MER1_type 1 230 0 324 0 0 0 chrX 24945395 24945431 -152028709 + (CA)n Simple_repeat Simple_repeat 2 37 0 460 233 106 42 chrX 24945818 24946007 -152028133 - L1ME3A LINE L1 -8 6162 5962 833 207 47 77 chrX 24946066 24946234 -152027906 - L1ME3A LINE L1 -213 5957 5800 1500 93 75 0 chrX 24946234 24946448 -152027692 - MER30 DNA MER1_type 0 230 1 833 207 47 77 chrX 24946448 24946579 -152027561 - L1ME3A LINE L1 -370 5800 5667 23 0 0 0 chrX 24948051 24948074 -152026066 + AT_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chrX 24948903 24948946 -152025194 + AT_rich Low_complexity Low_complexity 1 43 0 2156 119 0 0 chrX 24949163 24949457 -152024683 - AluSx SINE Alu -18 294 1 1816 162 0 7 chrX 24950932 24951238 -152022902 - AluJo SINE Alu 0 304 1 229 180 82 0 chrX 24951482 24951543 -152022597 - L1MA10 LINE L1 0 6334 6269 1887 157 0 7 chrX 24951875 24952168 -152021972 - AluJb SINE Alu -21 291 1 262 307 87 46 chrX 24952611 24952829 -152021311 - L2 LINE L2 -387 2927 2701 555 242 108 57 chrX 24952846 24953235 -152020905 + L1MC4a LINE L1 5722 6130 -1678 21 0 0 0 chrX 24953255 24953276 -152020864 + AT_rich Low_complexity Low_complexity 1 21 0 897 244 19 14 chrX 24954414 24954623 -152019517 + MIR SINE MIR 49 258 -4 396 303 28 61 chrX 24954677 24954733 -152019407 - L1MD2 LINE L1 -245 6114 6059 3551 148 29 72 chrX 24954733 24955568 -152018572 - L1MA8 LINE L1 -210 6081 5283 * 6478 172 24 15 chrX 24955566 24956926 -152017214 + L1MA8 LINE L1 3938 5308 -838 218 316 58 47 chrX 24957027 24957198 -152016942 - L2 LINE L2 -408 2906 2734 3265 187 45 80 chrX 24958011 24958840 -152015300 - L1ME2 LINE L1 -13 6151 5339 1485 167 22 13 chrX 24958840 24959157 -152014983 - L1MA8 LINE L1 -6 6285 5966 3265 187 45 80 chrX 24959157 24959282 -152014858 - L1ME2 LINE L1 -825 5339 5211 191 268 56 14 chrX 24959306 24959377 -152014763 - L3b LINE CR1 -246 1337 1264 897 196 5 64 chrX 24959571 24959791 -152014349 + MER3 DNA MER1_type 1 207 -2 304 304 14 22 chrX 24959887 24960185 -152013955 + L1MC4a LINE L1 4726 5019 -1127 228 128 106 0 chrX 24960453 24960500 -152013640 + MLT-int LTR MaLR 1444 1495 -240 5877 102 35 22 chrX 24960500 24960972 -152013168 - Tigger3b DNA MER2_type -1797 1231 767 2318 108 3 0 chrX 24960972 24961278 -152012862 + AluSp SINE Alu 1 307 -6 5877 102 35 22 chrX 24961278 24962010 -152012130 - Tigger3b DNA MER2_type -2261 767 1 651 156 97 159 chrX 24962010 24962267 -152011873 + MLT1C-int LTR MaLR 1131 1371 0 1368 221 39 68 chrX 24962267 24962458 -152011682 + MLT1C LTR MaLR 1 196 -271 1655 153 40 7 chrX 24962458 24962733 -152011407 + AluJb SINE Alu 1 284 -28 1368 221 39 68 chrX 24962733 24962998 -152011142 + MLT1C LTR MaLR 196 444 -23 480 318 67 28 chrX 24963416 24964032 -152010108 + L1MC4a LINE L1 5255 5894 -1914 465 226 139 0 chrX 24964117 24964254 -152009886 + MLT1H LTR MaLR 7 162 -387 319 208 25 67 chrX 24964462 24964582 -152009558 + MLT1C LTR MaLR 434 548 -1 1587 202 26 45 chrX 24964878 24965298 -152008842 + MLT1C LTR MaLR 54 465 -2 352 250 111 44 chrX 24965319 24965499 -152008641 - MLT1J LTR MaLR -3 508 317 258 296 8 48 chrX 24965699 24965824 -152008316 - L2 LINE L2 -737 2577 2458 968 97 0 159 chrX 24966041 24966268 -152007872 + L1MC1 LINE L1 6128 6318 -15 1863 174 0 13 chrX 24966277 24966588 -152007552 + AluJb SINE Alu 1 307 -5 22 35 0 0 chrX 24966697 24966726 -152007414 + AT_rich Low_complexity Low_complexity 1 29 0 899 272 82 37 chrX 24966832 24967421 -152006719 + HAL1b LINE L1 55 669 -679 2034 121 0 3 chrX 24967432 24967741 -152006399 + AluSx SINE Alu 1 308 0 409 341 63 20 chrX 24967784 24968039 -152006101 + L1 LINE L1 2257 2522 -3624 1633 201 40 40 chrX 24968208 24968582 -152005558 + MLT1A2 LTR MaLR 1 374 0 500 193 22 44 chrX 24968804 24968939 -152005201 - MER104 DNA Tc2 -6 174 43 426 288 105 46 chrX 24969220 24969641 -152004499 + L1 LINE L1 2978 3430 -2716 2227 82 4 0 chrX 24969641 24969920 -152004220 + AluSp SINE Alu 3 282 -31 426 288 105 46 chrX 24969920 24969968 -152004172 + L1 LINE L1 3430 3474 -2672 1107 247 215 22 chrX 24969987 24970566 -152003574 - LTR50 LTR ERVL -19 682 64 235 355 11 11 chrX 24970745 24970928 -152003212 + L1 LINE L1 3753 3935 -2211 731 284 126 33 chrX 24971010 24971344 -152002796 - L2 LINE L2 0 3313 2949 1336 333 68 17 chrX 24971378 24972133 -152002007 - L2 LINE L2 -801 2513 1721 1840 248 166 8 chrX 24972235 24972887 -152001253 + L2 LINE L2 2272 3006 -307 756 150 0 29 chrX 24973083 24973256 -152000884 + GA-rich Low_complexity Low_complexity 3 170 0 192 284 45 0 chrX 24973530 24973597 -152000543 - MIR SINE MIR -128 134 65 24 32 0 0 chrX 24973834 24973865 -152000275 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chrX 24974443 24974469 -151999671 + AT_rich Low_complexity Low_complexity 1 26 0 525 151 32 56 chrX 24975783 24975909 -151998231 - L1ME3A LINE L1 -10 6160 6038 1482 269 146 30 chrX 24975913 24976786 -151997354 - HAL1b LINE L1 -225 1123 352 564 15 0 0 chrX 24976786 24976851 -151997289 + (TG)n Simple_repeat Simple_repeat 2 66 0 2273 94 0 10 chrX 24976851 24977139 -151997001 - AluSx SINE Alu -27 285 1 1482 269 146 30 chrX 24977139 24977192 -151996948 - HAL1b LINE L1 -995 353 89 1389 272 68 14 chrX 24978427 24978854 -151995286 + L3 LINE CR1 434 883 -694 205 263 35 18 chrX 24978940 24978997 -151995143 + MIR SINE MIR 16 73 -135 412 280 138 37 chrX 24979219 24979437 -151994703 + L3 LINE CR1 1115 1354 -223 249 254 42 0 chrX 24979441 24979512 -151994628 + L3 LINE CR1 1469 1542 -35 2486 56 0 3 chrX 24979896 24980200 -151993940 + AluSc SINE Alu 1 303 -6 187 231 26 0 chrX 24981566 24981605 -151992535 - MIR SINE MIR -117 145 106 2388 64 3 0 chrX 24982072 24982367 -151991773 - AluSg SINE Alu -14 296 1 225 65 0 0 chrX 24983347 24983378 -151990762 + (CCCTG)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chrX 24983421 24983444 -151990696 + GC_rich Low_complexity Low_complexity 1 23 0 302 295 143 48 chrX 24983704 24983955 -151990185 - L1M2 LINE L1 -5754 1095 821 211 204 0 20 chrX 24985482 24985531 -151988609 + C-rich Low_complexity Low_complexity 3 50 0 397 228 203 13 chrX 24986875 24987033 -151987107 + MIR SINE MIR 25 212 -50 32 0 0 0 chrX 24988119 24988151 -151985989 + AT_rich Low_complexity Low_complexity 1 32 0 272 120 20 0 chrX 24989164 24989214 -151984926 + CT-rich Low_complexity Low_complexity 1 51 0 28 48 0 0 chrX 24989607 24989649 -151984491 + AT_rich Low_complexity Low_complexity 1 42 0 1176 293 92 5 chrX 24989865 24990258 -151983882 + MER115 DNA AcHobo 32 458 -235 242 118 0 59 chrX 24992159 24992210 -151981930 - MER116 DNA Mariner 0 80 33 1903 211 132 30 chrX 24992478 24993018 -151981122 + MLT1G1 LTR MaLR 1 595 0 2228 140 39 83 chrX 24993258 24993778 -151980362 + MLT1D LTR MaLR 3 499 -6 343 247 96 7 chrX 24994203 24994349 -151979791 - L1ME2 LINE L1 0 6164 6006 507 60 0 0 chrX 24994349 24994416 -151979724 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 2434 85 3 0 chrX 24994423 24994730 -151979410 - AluSg SINE Alu -2 308 1 2045 113 0 20 chrX 24994735 24995027 -151979113 - AluSx SINE Alu 0 312 27 1945 205 33 45 chrX 24995043 24995484 -151978656 - L1ME2 LINE L1 -143 6021 5585 2562 111 23 10 chrX 24995484 24995880 -151978260 - MER57A LTR ERV1 -2 401 1 1945 205 33 45 chrX 24995880 24995950 -151978190 - L1ME2 LINE L1 -579 5585 5516 185 150 0 25 chrX 24996660 24996700 -151977440 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 534 304 38 87 chrX 24996894 24997263 -151976877 - L2 LINE L2 -5 3267 2917 1956 201 87 49 chrX 24997319 24997926 -151976214 + L1MC4 LINE L1 7413 8042 0 487 321 63 39 chrX 24997991 24998324 -151975816 - L2 LINE L2 -631 2683 2343 1588 255 173 10 chrX 24998327 24998848 -151975292 + L2 LINE L2 2372 2977 -337 560 283 31 95 chrX 24998856 24999372 -151974768 - MLT1J LTR MaLR -28 483 1 22 0 0 0 chrX 24999949 24999971 -151974169 + AT_rich Low_complexity Low_complexity 1 22 0 2250 82 0 0 chrX 25001496 25001775 -151972365 + AluY SINE Alu 1 279 -32 255 20 0 78 chrX 25001775 25001826 -151972314 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 238 227 0 0 chrX 25002974 25003018 -151971122 - MIR3 SINE MIR -11 197 154 239 369 0 0 chrX 25003029 25003094 -151971046 - MIR SINE MIR -124 84 20 1645 218 73 38 chrX 25004035 25004488 -151969652 + L1ME2 LINE L1 5597 6089 -89 870 195 158 5 chrX 25004488 25004678 -151969462 - MER20 DNA MER1_type 0 219 1 1645 218 73 38 chrX 25004678 25004771 -151969369 + L1ME2 LINE L1 6089 6177 -1 2614 128 0 12 chrX 25004802 25005232 -151968908 + L1MC3 LINE L1 7202 7626 -159 198 0 0 0 chrX 25005275 25005297 -151968843 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7117 54 0 0 chrX 25005297 25006810 -151967330 - L1PA6 LINE L1 -18 6136 4624 677 131 9 9 chrX 25006811 25006918 -151967222 + FLAM_C SINE Alu 27 133 -10 645 174 36 0 chrX 25006920 25007058 -151967082 + L1MC3 LINE L1 7617 7759 -26 540 181 9 0 chrX 25007420 25007536 -151966604 + L1MA6 LINE L1 3345 3461 -2685 * 6817 145 31 26 chrX 25007530 25008587 -151965553 + L1MA6 LINE L1 3980 5031 -1269 2049 166 0 0 chrX 25008587 25008894 -151965246 + AluSx SINE Alu 3 309 -3 6817 145 31 26 chrX 25008894 25009450 -151964690 + L1MA6 LINE L1 5031 5583 -717 2374 94 0 0 chrX 25009450 25009749 -151964391 + AluSx SINE Alu 2 300 -12 6817 145 31 26 chrX 25009749 25010315 -151963825 + L1MA6 LINE L1 5583 6157 -143 1790 169 0 44 chrX 25010360 25010679 -151963461 - AluSx SINE Alu -7 305 1 1051 76 63 0 chrX 25010680 25010838 -151963302 + L1MA6 LINE L1 6133 6300 0 359 352 16 32 chrX 25011038 25011163 -151962977 - L2 LINE L2 -8 3264 3142 238 259 99 37 chrX 25011577 25011658 -151962482 + MIR SINE MIR 92 177 -85 370 311 5 20 chrX 25011810 25012000 -151962140 + MIR SINE MIR 3 247 -15 426 288 58 0 chrX 25012022 25012161 -151961979 + L2 LINE L2 3167 3313 0 634 255 81 23 chrX 25012339 25012598 -151961542 + MLT1G LTR MaLR 15 288 -302 2538 211 37 37 chrX 25012887 25013426 -151960714 + MLT1F LTR MaLR 4 542 0 284 327 122 38 chrX 25014216 25014479 -151959661 + L3b LINE CR1 1291 1575 -8 382 301 29 12 chrX 25015827 25016000 -151958140 - L1ME4a LINE L1 0 6121 5946 419 299 143 26 chrX 25016094 25016325 -151957815 + MIR SINE MIR 5 262 0 454 271 233 23 chrX 25016336 25016679 -151957461 - L1ME4a LINE L1 -366 5755 5341 202 310 10 70 chrX 25016681 25016781 -151957359 - L2 LINE L2 -3 3269 3176 1558 148 7 69 chrX 25017592 25017897 -151956243 - AluJo SINE Alu -26 286 1 859 233 175 53 chrX 25018013 25018430 -151955710 - MER110A LTR ERV1 0 468 1 397 273 55 0 chrX 25018451 25018561 -151955579 - MIR SINE MIR -65 143 28 190 214 24 0 chrX 25019301 25019343 -151954797 + L2 LINE L2 3271 3313 0 828 312 80 56 chrX 25020491 25021094 -151953046 + L3 LINE CR1 359 975 -602 197 235 52 87 chrX 25021844 25021959 -151952181 + L2 LINE L2 2262 2372 -942 493 323 143 31 chrX 25022264 25022558 -151951582 + L3 LINE CR1 1246 1572 -5 253 214 122 41 chrX 25022607 25022705 -151951435 + L1ME4a LINE L1 6012 6117 -4 1165 254 46 60 chrX 25022833 25023303 -151950837 - MLT1J LTR MaLR -7 504 1 524 232 53 13 chrX 25023435 25023586 -151950554 + MIR SINE MIR 106 262 0 297 0 0 0 chrX 25023785 25023818 -151950322 + (TG)n Simple_repeat Simple_repeat 1 33 0 270 0 0 0 chrX 25023817 25023847 -151950293 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 4607 138 37 90 chrX 25027510 25028522 -151945618 + L1MC3 LINE L1 6828 7785 0 2270 90 3 3 chrX 25029631 25029931 -151944209 + AluSp SINE Alu 1 300 -13 413 190 0 0 chrX 25030865 25030944 -151943196 + MIR SINE MIR 183 261 -1 3534 79 2 5 chrX 25030955 25031399 -151942741 - L1PA10 LINE L1 -2 6166 5724 780 267 58 12 chrX 25031593 25031833 -151942307 + LTR16C LTR ERVL 182 432 -59 28 48 0 0 chrX 25033113 25033155 -151940985 + AT_rich Low_complexity Low_complexity 1 42 0 861 128 0 43 chrX 25033543 25033684 -151940456 - AluJb SINE Alu -177 135 1 1756 164 10 3 chrX 25033725 25034017 -151940123 + AluJb SINE Alu 1 294 -18 2311 186 40 12 chrX 25034173 25034667 -151939473 - Charlie4a DNA MER1_type 0 508 1 574 341 72 0 chrX 25035488 25035711 -151938429 + MIR SINE MIR 9 247 -15 2273 90 7 10 chrX 25035720 25036021 -151938119 + AluSq SINE Alu 1 300 -13 180 125 0 0 chrX 25036337 25036369 -151937771 + (CA)n Simple_repeat Simple_repeat 1 32 0 592 323 80 32 chrX 25037353 25037898 -151936242 + L2 LINE L2 2644 3205 -108 303 194 28 28 chrX 25037898 25037970 -151936170 - LTR16C LTR ERVL 0 491 420 261 204 43 54 chrX 25038004 25038097 -151936043 - MLT2E LTR ERVL -54 574 483 321 339 26 0 chrX 25038331 25038446 -151935694 + L2 LINE L2 3194 3311 -2 495 193 0 0 chrX 25039412 25039500 -151934640 - L2 LINE L2 -1 3312 3225 2195 185 69 41 chrX 25039512 25040020 -151934120 + L1ME1 LINE L1 5640 6161 -5 538 243 38 92 chrX 25040359 25040598 -151933542 + LTR16C LTR ERVL 266 491 0 6266 278 89 21 chrX 25040665 25041579 -151932561 - L2 LINE L2 -248 3065 2214 2076 141 52 35 chrX 25041579 25041948 -151932192 + THE1C LTR MaLR 1 375 0 6266 278 89 21 chrX 25041948 25043382 -151930758 - L2 LINE L2 -1099 2214 572 295 269 67 45 chrX 25043905 25044039 -151930101 + MER5B DNA MER1_type 42 178 0 2165 122 16 3 chrX 25044145 25044448 -151929692 + AluSx SINE Alu 1 307 -5 253 111 0 0 chrX 25044594 25044630 -151929510 + MER5A DNA MER1_type 154 189 0 226 271 43 0 chrX 25045798 25045868 -151928272 + CT-rich Low_complexity Low_complexity 1 73 0 668 175 137 0 chrX 25046011 25046170 -151927970 + MER5A DNA MER1_type 4 187 -2 3178 159 68 4 chrX 25046173 25046720 -151927420 - MER6A DNA MER2_type 0 605 24 899 147 0 0 chrX 25046735 25046871 -151927269 - AluJb SINE Alu -18 294 159 373 143 16 16 chrX 25046872 25046935 -151927205 - AluJb SINE Alu -115 187 125 324 158 0 0 chrX 25046958 25047015 -151927125 + (TG)n Simple_repeat Simple_repeat 2 58 0 950 112 0 0 chrX 25047042 25047167 -151926973 - AluJb SINE Alu -187 125 1 251 296 25 0 chrX 25047271 25047352 -151926788 + MER115 DNA AcHobo 151 233 -460 213 39 0 0 chrX 25047545 25047571 -151926569 + (TC)n Simple_repeat Simple_repeat 2 27 0 1023 227 8 21 chrX 25047571 25047809 -151926331 + MER115 DNA AcHobo 459 693 0 235 286 193 21 chrX 25047946 25048086 -151926054 - L3b LINE CR1 -318 1265 1102 369 319 53 0 chrX 25048182 25048295 -151925845 - MER5A DNA MER1_type -64 125 7 180 405 0 0 chrX 25048435 25048514 -151925626 - L2 LINE L2 -8 3264 3186 237 33 0 0 chrX 25050342 25050372 -151923768 + (CA)n Simple_repeat Simple_repeat 1 30 0 323 304 20 20 chrX 25050372 25050474 -151923666 - L3 LINE CR1 -66 1511 1410 225 185 93 19 chrX 25051057 25051111 -151923029 - MLT1K LTR MaLR -2 586 529 308 229 38 99 chrX 25051188 25051319 -151922821 - MLT1K LTR MaLR -92 496 374 832 229 30 45 chrX 25051923 25052124 -151922016 - MIR SINE MIR -37 225 28 562 295 20 10 chrX 25052358 25052579 -151921561 + MIR3 SINE MIR 1 219 -43 380 271 93 55 chrX 25052729 25052979 -151921161 - L1ME4a LINE L1 -24 6097 5858 457 300 83 21 chrX 25052979 25053219 -151920921 + MER112 DNA MER1_type 1 255 -1 380 271 93 55 chrX 25053219 25053334 -151920806 - L1ME4a LINE L1 -263 5858 1269 701 309 55 66 chrX 25053347 25053859 -151920281 - L2 LINE L2 0 3313 2808 2231 103 109 3 chrX 25054165 25054494 -151919646 - L1PB3 LINE L1 -8 6146 5783 411 152 0 0 chrX 25054495 25054574 -151919566 + (TA)n Simple_repeat Simple_repeat 2 80 0 4429 164 30 22 chrX 25054587 25055063 -151919077 - L1PB3 LINE L1 -363 5791 5320 2578 51 0 0 chrX 25055063 25055359 -151918781 - AluY SINE Alu -15 296 1 4429 164 30 22 chrX 25055359 25056356 -151917784 - L1PB3 LINE L1 -834 5320 4289 309 286 0 48 chrX 25056375 25056459 -151917681 + L2 LINE L2 3234 3313 0 2640 242 41 11 chrX 25057385 25058026 -151916114 - L1ME3A LINE L1 0 6170 5511 885 254 28 14 chrX 25058455 25058672 -151915468 + MIR SINE MIR 42 261 -1 930 200 71 31 chrX 25058754 25058979 -151915161 + L1ME LINE L1 5538 5771 -399 1397 243 72 13 chrX 25058982 25059369 -151914771 - LTR16A1 LTR ERVL -44 413 4 212 306 0 61 chrX 25060310 25060408 -151913732 - L2 LINE L2 0 3313 3222 527 179 0 0 chrX 25060728 25060806 -151913334 + Tigger3(Golem) DNA MER2_type 2 79 -2950 771 151 8 0 chrX 25060814 25060933 -151913207 + Tigger3(Golem) DNA MER2_type 2910 3029 0 215 318 16 0 chrX 25061433 25061496 -151912644 + (CAG)n Simple_repeat Simple_repeat 1 64 0 190 329 13 0 chrX 25061503 25061579 -151912561 - MIR SINE MIR -30 232 156 300 246 15 0 chrX 25061579 25061644 -151912496 - MER2 DNA MER2_type 0 345 280 457 183 0 0 chrX 25061710 25061781 -151912359 + FLAM_C SINE Alu 37 107 -36 1022 141 117 0 chrX 25061781 25061944 -151912196 - MER2 DNA MER2_type -163 182 1 279 319 21 21 chrX 25061964 25062058 -151912082 - MIR SINE MIR -150 112 19 467 241 173 0 chrX 25062112 25062274 -151911866 + MIR SINE MIR 67 256 -6 1254 93 26 31 chrX 25062968 25063162 -151910978 - L1PA13 LINE L1 0 6163 5971 1561 226 67 18 chrX 25063162 25063654 -151910486 - L1M4 LINE L1 -2938 3208 2693 194 0 39 0 chrX 25063654 25063680 -151910460 + (TA)n Simple_repeat Simple_repeat 2 28 0 1007 201 31 38 chrX 25064008 25064145 -151909995 - L1M4 LINE L1 -3609 2537 2401 1908 140 21 7 chrX 25064145 25064431 -151909709 - AluJo SINE Alu -21 291 2 1007 201 31 38 chrX 25064431 25064582 -151909558 - L1M4 LINE L1 -3745 2401 2251 362 253 74 0 chrX 25065049 25065144 -151908996 + MIR SINE MIR 88 189 -73 212 259 74 0 chrX 25066281 25066335 -151907805 + MER5A DNA MER1_type 64 121 -68 30 0 0 0 chrX 25066977 25067007 -151907133 + AT_rich Low_complexity Low_complexity 1 30 0 7121 61 11 2 chrX 25068382 25069497 -151904643 + L1PA8A LINE L1 5006 6128 -3 296 258 121 16 chrX 25069552 25069676 -151904464 + L2 LINE L2 3177 3313 0 189 269 58 0 chrX 25069729 25069781 -151904359 + MIR SINE MIR 118 172 -90 1478 252 51 22 chrX 25069818 25070227 -151903913 + LTR16A LTR ERVL 21 441 -9 638 209 44 124 chrX 25070428 25070585 -151903555 + MIR SINE MIR 2 137 -125 1995 146 13 3 chrX 25070585 25070894 -151903246 + AluSx SINE Alu 1 312 0 638 209 44 124 chrX 25070894 25070961 -151903179 + MIR SINE MIR 137 208 -54 544 302 131 37 chrX 25071162 25071490 -151902650 + LTR16A LTR ERVL 92 450 0 2607 40 0 0 chrX 25072060 25072358 -151901782 - AluY SINE Alu -13 298 1 1773 171 0 0 chrX 25073782 25074062 -151900078 - AluJb SINE Alu -32 280 1 365 306 65 8 chrX 25074064 25074188 -151899952 - L2 LINE L2 0 3272 3142 791 180 170 5 chrX 25074241 25074435 -151899705 - MIR SINE MIR -21 241 16 251 72 24 108 chrX 25074610 25074693 -151899447 + (GA)n Simple_repeat Simple_repeat 1 76 0 613 203 0 8 chrX 25074840 25074958 -151899182 + MER103 DNA DNA 3 119 -47 183 129 0 0 chrX 25075452 25075483 -151898657 + (TTCC)n Simple_repeat Simple_repeat 2 32 0 588 310 88 5 chrX 25075904 25076120 -151898020 + MIR SINE MIR 27 260 -2 281 256 0 35 chrX 25076560 25076646 -151897494 + LTR67 LTR ERVL 460 542 -15 2959 9 0 0 chrX 25077197 25077515 -151896625 + AluYb8 SINE Alu 1 318 0 263 303 13 13 chrX 25078532 25078608 -151895532 + MIR3 SINE MIR 117 192 -16 402 264 71 13 chrX 25079032 25079187 -151894953 + MER103 DNA DNA 1 164 -2 2145 180 25 0 chrX 25079259 25079615 -151894525 + MLT1A1 LTR MaLR 1 365 0 2496 144 48 0 chrX 25079615 25080012 -151894128 + MLT1A1-int LTR MaLR 1 416 -1319 3081 204 34 42 chrX 25080021 25080348 -151893792 + MLT1A1-int LTR MaLR 1044 1372 -363 1813 125 64 4 chrX 25080348 25080629 -151893511 - AluSx SINE Alu -14 298 1 3081 204 34 42 chrX 25080629 25080998 -151893142 + MLT1A1-int LTR MaLR 1372 1735 0 1849 158 128 18 chrX 25080998 25081327 -151892813 + MLT1A1 LTR MaLR 1 365 0 285 98 0 0 chrX 25083585 25083626 -151890514 + (TG)n Simple_repeat Simple_repeat 2 42 0 216 97 0 0 chrX 25083627 25083658 -151890482 + (GA)n Simple_repeat Simple_repeat 2 32 0 219 295 26 26 chrX 25083696 25083774 -151890366 + MIR SINE MIR 117 194 -68 1937 207 42 28 chrX 25083819 25084292 -151889848 - Charlie4a DNA MER1_type 0 508 29 2245 126 0 0 chrX 25084511 25084820 -151889320 - AluSx SINE Alu -3 309 1 879 123 0 39 chrX 25086177 25086307 -151887833 + FLAM_C SINE Alu 1 125 -8 195 284 15 45 chrX 25086749 25086816 -151887324 - MIR SINE MIR -18 244 180 603 272 71 16 chrX 25086899 25087083 -151887057 + MIR SINE MIR 20 213 -49 212 100 25 0 chrX 25087110 25087150 -151886990 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 267 31 0 0 chrX 25088172 25088204 -151885936 + (GA)n Simple_repeat Simple_repeat 1 32 0 12976 24 1 2 chrX 25088812 25091002 -151883138 + L1PA4 LINE L1 3962 6150 -5 307 305 114 48 chrX 25091025 25091209 -151882931 - MIR SINE MIR -63 145 5 305 140 18 0 chrX 25091361 25091418 -151882722 + (TG)n Simple_repeat Simple_repeat 1 58 0 390 320 33 0 chrX 25091519 25091641 -151882499 + MIR SINE MIR 71 196 -66 203 213 0 0 chrX 25092579 25092626 -151881514 + L2 LINE L2 3267 3313 0 407 303 26 32 chrX 25093307 25093462 -151880678 - L2 LINE L2 -369 2945 2792 835 260 198 11 chrX 25093464 25093822 -151880318 - L2 LINE L2 -1100 2214 1790 1482 137 103 0 chrX 25093825 25094058 -151880082 - Tigger3(Golem) DNA MER2_type -2 3027 2771 821 156 0 106 chrX 25094054 25094214 -151879926 - Tigger3(Golem) DNA MER2_type -2886 143 1 * 760 267 136 13 chrX 25094225 25094600 -151879540 - L2 LINE L2 -1537 1777 1357 2180 125 3 0 chrX 25094659 25094962 -151879178 + AluSx SINE Alu 1 304 -8 1107 139 5 27 chrX 25095448 25095635 -151878505 - MER5A DNA MER1_type -1 188 6 231 270 220 0 chrX 25097231 25097331 -151876809 + L2 LINE L2 3151 3272 0 2144 130 0 10 chrX 25097960 25098267 -151875873 - AluSx SINE Alu -8 304 1 180 307 33 78 chrX 25098532 25098685 -151875455 - MIR SINE MIR -10 252 107 380 319 106 65 chrX 25099057 25099349 -151874791 + L3 LINE CR1 1241 1544 -33 1740 237 67 12 chrX 25099955 25100449 -151873691 + L1ME3 LINE L1 5589 6109 -53 383 230 50 60 chrX 25100735 25100835 -151873305 + MIR SINE MIR 45 143 -65 430 171 23 23 chrX 25100854 25100942 -151873198 - L2 LINE L2 0 3313 3226 405 212 136 15 chrX 25101509 25101641 -151872499 - LTR16C LTR ERVL 0 491 344 361 274 23 21 chrX 25102052 25102198 -151871942 + L1MC5 LINE L1 7845 8042 0 199 368 15 0 chrX 25102448 25102516 -151871624 - MIR SINE MIR -119 143 75 197 227 23 0 chrX 25102838 25102882 -151871258 - L2 LINE L2 -13 3259 3215 1310 245 49 83 chrX 25103826 25104333 -151869807 + LTR16C LTR ERVL 1 490 -1 1329 274 62 8 chrX 25104599 25104968 -151869172 + LTR16A LTR ERVL 62 450 0 439 309 120 52 chrX 25104970 25105486 -151868654 + L2 LINE L2 2449 3000 -272 219 225 0 0 chrX 25105486 25105526 -151868614 + (CA)n Simple_repeat Simple_repeat 2 41 0 842 262 66 50 chrX 25105615 25105977 -151868163 - LTR16C LTR ERVL -4 487 120 195 351 53 9 chrX 25106595 25106709 -151867431 - MIR3 SINE MIR -8 200 82 256 242 36 91 chrX 25106874 25106891 -151867249 - L1MA10 LINE L1 -2 6332 6316 3591 208 28 35 chrX 25106891 25107736 -151866404 - L1ME2 LINE L1 -9 6155 5317 5566 112 2 50 chrX 25107740 25108617 -151865523 + L1PA16 LINE L1 5323 6157 -9 1266 177 42 21 chrX 25108635 25108980 -151865160 - L1ME2 LINE L1 -816 5330 4990 311 303 68 25 chrX 25109203 25109365 -151864775 + MIR SINE MIR 81 249 -13 598 256 6 28 chrX 25110028 25110204 -151863936 + MIR SINE MIR 91 262 0 1408 256 63 37 chrX 25111038 25111860 -151862280 + MER45C DNA AcHobo 3 953 0 490 231 48 43 chrX 25111914 25112136 -151862004 - MLT1J1 LTR MaLR -228 222 1 288 273 23 0 chrX 25112341 25112429 -151861711 - Charlie7 DNA MER1_type 0 2612 2523 22 0 0 0 chrX 25112480 25112502 -151861638 + AT_rich Low_complexity Low_complexity 1 22 0 1308 257 57 48 chrX 25112665 25113454 -151860686 - L2 LINE L2 -3 3310 2516 321 326 81 40 chrX 25113458 25113997 -151860143 + L2 LINE L2 2715 3308 -5 1011 211 14 14 chrX 25115371 25115594 -151858546 - L1ME3A LINE L1 -5 6165 5943 332 260 29 10 chrX 25115694 25115798 -151858342 + MLT1H LTR MaLR 84 189 -360 273 202 101 56 chrX 25115882 25115971 -151858169 + MLT1K LTR MaLR 304 396 -146 686 264 43 40 chrX 25117699 25118120 -151856020 - MLT1H1 LTR MaLR 0 555 94 341 229 29 0 chrX 25118314 25118384 -151855756 + L2 LINE L2 3201 3272 0 977 295 61 35 chrX 25118397 25118824 -151855316 + MLT1J2 LTR MaLR 1 438 -12 2121 230 35 101 chrX 25119276 25119911 -151854229 + MLT1E LTR MaLR 1 593 0 347 265 69 123 chrX 25120429 25120761 -151853379 + Charlie8 DNA MER1_type 151 464 -1953 265 203 34 0 chrX 25120786 25120845 -151853295 + Charlie8 DNA MER1_type 1365 1425 -992 345 325 175 12 chrX 25121589 25121674 -151852466 + L2 LINE L2 2152 2222 -1092 16069 117 53 5 chrX 25121674 25123976 -151850164 + Tigger1 DNA MER2_type 1 2414 -4 345 325 175 12 chrX 25123976 25124290 -151849850 + L2 LINE L2 2222 2616 -698 1482 99 0 5 chrX 25124310 25124511 -151849629 - L1PB1 LINE L1 -1 6150 5951 931 47 0 0 chrX 25124538 25124645 -151849495 - L1PA3 LINE L1 -4 6151 6045 3521 34 0 0 chrX 25124645 25125057 -151849083 + L1P LINE L1 4682 5093 -1053 * 4929 112 12 34 chrX 25125052 25125272 -151848868 - L1PB1 LINE L1 -176 5975 5752 438 69 0 0 chrX 25125272 25125330 -151848810 + (TA)n Simple_repeat Simple_repeat 1 58 0 4929 112 12 34 chrX 25125330 25126014 -151848126 - L1PB1 LINE L1 -399 5752 5091 622 292 12 6 chrX 25127161 25127329 -151846811 + MIR SINE MIR 3 171 -91 2299 136 72 49 chrX 25127525 25127996 -151846144 + L1MB7 LINE L1 5703 6184 0 422 294 56 8 chrX 25128277 25128403 -151845737 + MLT1K LTR MaLR 144 275 -313 370 295 0 0 chrX 25128533 25128628 -151845512 + MLT1K LTR MaLR 481 575 -13 901 247 31 9 chrX 25129970 25130193 -151843947 + MIR SINE MIR 34 261 -1 315 211 7 34 chrX 25130318 25130465 -151843675 + (TA)n Simple_repeat Simple_repeat 2 144 0 191 320 100 20 chrX 25130711 25130811 -151843329 - MIR3 SINE MIR -96 112 5 * 211 289 67 10 chrX 25130769 25130873 -151843267 + MIR SINE MIR 93 202 -60 828 229 70 37 chrX 25131794 25132008 -151842132 + MIR SINE MIR 28 248 -14 221 314 71 29 chrX 25132031 25132171 -151841969 + L2 LINE L2 2891 3036 -236 2452 165 62 19 chrX 25132348 25132828 -151841312 + L1MB8 LINE L1 5672 6172 -6 320 316 30 45 chrX 25133213 25133346 -151840794 - MIR3 SINE MIR -75 133 3 245 348 43 14 chrX 25133579 25133717 -151840423 + MIR SINE MIR 6 147 -115 382 291 60 20 chrX 25134057 25134208 -151839932 - MIR SINE MIR -72 190 34 1301 266 102 22 chrX 25135353 25135805 -151838335 + LTR16C LTR ERVL 4 491 0 426 162 49 84 chrX 25136778 25136910 -151837230 - MLT1H LTR MaLR -14 533 361 242 308 140 0 chrX 25137261 25137368 -151836772 + L2 LINE L2 3116 3237 -35 183 42 0 0 chrX 25137419 25137443 -151836697 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 212 243 86 14 chrX 25137930 25138000 -151836140 - MIR SINE MIR -2 260 186 302 316 75 0 chrX 25138137 25138270 -151835870 + MIR3 SINE MIR 5 147 -61 5038 144 83 24 chrX 25138279 25138639 -151835501 - MER4D LTR ERV1 0 903 566 1475 190 63 7 chrX 25138639 25138923 -151835217 - AluJo SINE Alu -10 302 3 5038 144 83 24 chrX 25138923 25139414 -151834726 - MER4D LTR ERV1 -337 566 1 202 214 71 36 chrX 25139991 25140047 -151834093 - L2 LINE L2 -61 3252 3195 468 0 0 0 chrX 25140057 25140109 -151834031 + (TG)n Simple_repeat Simple_repeat 2 53 0 4641 136 15 9 chrX 25140958 25141736 -151832404 - L1PA16 LINE L1 -162 6004 5223 21 36 0 0 chrX 25141767 25141795 -151832345 + AT_rich Low_complexity Low_complexity 1 28 0 638 107 0 0 chrX 25141839 25141923 -151832217 - THE1C LTR MaLR 0 428 345 1121 130 16 27 chrX 25141925 25142109 -151832031 - THE1C LTR MaLR -190 185 4 11362 116 27 7 chrX 25142112 25143660 -151830480 - THE1C-int LTR MaLR 0 1580 1 1896 161 70 14 chrX 25143660 25144015 -151830125 - THE1C LTR MaLR 0 375 1 1798 189 27 6 chrX 25144237 25144602 -151829538 + L1ME2 LINE L1 5533 5905 -259 380 246 98 16 chrX 25144603 25144745 -151829395 + L1ME2 LINE L1 5990 6304 -30 1309 248 115 30 chrX 25146663 25147167 -151826973 - MLT1H1 LTR MaLR -4 551 5 314 324 88 7 chrX 25147615 25147751 -151826389 - MIR SINE MIR -103 159 13 256 354 8 39 chrX 25148753 25148880 -151825260 - L2 LINE L2 -3 3269 3147 704 301 80 62 chrX 25149065 25149906 -151824234 - L1MEd LINE L1 -5235 884 29 378 221 116 0 chrX 25151241 25151336 -151822804 + L2 LINE L2 1860 1965 -1349 270 0 0 0 chrX 25151713 25151743 -151822397 + (TA)n Simple_repeat Simple_repeat 2 31 0 472 147 26 42 chrX 25151894 25152007 -151822133 + L1ME LINE L1 5686 5796 -370 275 98 0 0 chrX 25152016 25152057 -151822083 - Alu SINE Alu -9 293 253 4645 81 10 0 chrX 25152057 25152640 -151821500 + L1PA13 LINE L1 5573 6161 -2 351 175 0 0 chrX 25153513 25153570 -151820570 - L2 LINE L2 -2 3311 3255 551 224 81 89 chrX 25154583 25155081 -151819059 - MLT1H LTR MaLR 0 549 1 278 324 26 2 chrX 25155105 25155224 -151818916 + MIR SINE MIR 25 146 -72 189 269 104 60 chrX 25155277 25155344 -151818796 - L2 LINE L2 -12 3260 3191 492 280 20 17 chrX 25155677 25155818 -151818322 - MIR3 SINE MIR -10 198 56 423 0 0 0 chrX 25156007 25156054 -151818086 + (A)n Simple_repeat Simple_repeat 1 47 0 314 267 10 50 chrX 25156197 25156298 -151817842 - MIR3 SINE MIR -54 154 58 1985 147 3 0 chrX 25156407 25156707 -151817433 - AluSx SINE Alu -11 301 1 23 0 0 0 chrX 25156980 25157003 -151817137 + AT_rich Low_complexity Low_complexity 1 23 0 398 308 71 63 chrX 25157367 25157620 -151816520 - MIR SINE MIR -3 259 5 442 206 199 22 chrX 25157919 25158055 -151816085 - MER5A DNA MER1_type -21 168 9 638 228 74 7 chrX 25158089 25158238 -151815902 + MIR SINE MIR 104 262 0 756 184 0 32 chrX 25158833 25158958 -151815182 + FLAM_A SINE Alu 3 123 -10 327 254 32 32 chrX 25158973 25159099 -151815041 + Charlie7 DNA MER1_type 31 156 -2456 1013 232 69 67 chrX 25159254 25159703 -151814437 + MLT1J2 LTR MaLR 1 450 0 540 315 39 11 chrX 25159825 25160006 -151814134 + MIR SINE MIR 3 188 -74 2168 164 55 6 chrX 25160424 25160772 -151813368 + MLT1A1 LTR MaLR 1 365 0 766 246 34 0 chrX 25160868 25161043 -151813097 - MER5A DNA MER1_type 0 189 9 229 228 30 119 chrX 25161057 25161158 -151812982 - L3 LINE CR1 -298 1279 1188 618 297 62 83 chrX 25161292 25161747 -151812393 - L2 LINE L2 -11 3261 2817 323 225 7 35 chrX 25162239 25162381 -151811759 + GA-rich Low_complexity Low_complexity 1 138 0 195 222 0 0 chrX 25162440 25162485 -151811655 + GA-rich Low_complexity Low_complexity 3 47 0 696 274 78 10 chrX 25162632 25162867 -151811273 + MIR SINE MIR 1 251 -11 201 121 0 0 chrX 25163346 25163379 -151810761 - L2 LINE L2 -1 3271 3239 402 280 20 0 chrX 25163985 25164085 -151810055 + MIR SINE MIR 53 154 -108 532 347 44 7 chrX 25164111 25164382 -151809758 - MLT1J LTR MaLR 0 511 231 344 216 0 26 chrX 25164377 25164466 -151809674 - MLT1J2 LTR MaLR -253 158 71 * 305 343 21 29 chrX 25164551 25164691 -151809449 + L2 LINE L2 3134 3272 0 676 204 32 38 chrX 25164833 25164990 -151809150 - MER91B DNA MER1_type 0 190 35 322 362 37 6 chrX 25165239 25165402 -151808738 + MIR SINE MIR 49 216 -46 475 247 38 86 chrX 25165473 25165659 -151808481 + MIR SINE MIR 52 228 -34 225 330 11 0 chrX 25167116 25167204 -151806936 - MIR SINE MIR -71 191 103 1140 224 31 8 chrX 25167210 25167465 -151806675 - MIR SINE MIR 0 262 2 1908 129 37 0 chrX 25168139 25168449 -151805691 + AluSx SINE Alu 1 320 0 1349 243 44 3 chrX 25168763 25169080 -151805060 - LTR16C LTR ERVL -9 482 153 490 248 0 40 chrX 25169235 25169360 -151804780 - MLT1K LTR MaLR -5 583 464 390 212 106 73 chrX 25169450 25169629 -151804511 - MLT1K LTR MaLR -132 456 272 3990 124 41 5 chrX 25169651 25170264 -151803876 + L1MA8 LINE L1 5651 6285 -6 257 319 0 0 chrX 25170295 25170386 -151803754 - L1MC4 LINE L1 -1338 6704 6614 403 330 0 0 chrX 25170390 25170502 -151803638 - MLT1K LTR MaLR -326 262 151 863 205 105 5 chrX 25170574 25170764 -151803376 + MER63A DNA MER1_type 2 210 0 511 232 32 16 chrX 25171036 25171161 -151802979 + L2 LINE L2 3187 3313 0 297 0 0 0 chrX 25172484 25172517 -151801623 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 333 0 0 0 chrX 25172516 25172553 -151801587 + (GA)n Simple_repeat Simple_repeat 1 37 0 336 251 123 43 chrX 25172673 25172836 -151801304 - MIR SINE MIR 0 262 87 239 325 90 18 chrX 25173168 25173334 -151800806 - L2 LINE L2 -22 3291 3114 905 250 0 27 chrX 25173340 25173564 -151800576 - MIR SINE MIR -43 219 2 1795 205 143 28 chrX 25173760 25174223 -151799917 - MLT1F LTR MaLR -9 533 18 882 283 217 36 chrX 25174862 25175477 -151798663 - L2 LINE L2 -38 3234 2523 22 0 0 0 chrX 25175791 25175813 -151798327 + AT_rich Low_complexity Low_complexity 1 22 0 1632 163 53 115 chrX 25175944 25176291 -151797849 - MLT1A2 LTR MaLR 0 374 7 210 37 0 0 chrX 25176291 25176318 -151797822 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2043 129 0 4 chrX 25176324 25176602 -151797538 - AluSx SINE Alu -35 277 1 1632 163 53 115 chrX 25176602 25176646 -151797494 - MLT1A2 LTR MaLR -328 46 1 459 277 78 40 chrX 25176756 25177068 -151797072 + L1ME4a LINE L1 4884 5183 -938 1514 169 0 54 chrX 25177068 25177364 -151796776 + AluJo SINE Alu 33 312 0 459 277 78 40 chrX 25177364 25178102 -151796038 + L1ME4a LINE L1 5183 5969 -152 758 183 18 12 chrX 25178111 25178275 -151795865 + MER104 DNA Tc2 13 177 -3 303 307 35 35 chrX 25179185 25179299 -151794841 + MIR SINE MIR 40 153 -55 280 254 0 42 chrX 25179637 25179708 -151794432 - MIR SINE MIR -78 184 117 1037 227 37 19 chrX 25180347 25180563 -151793577 + MER58A DNA MER1_type 4 223 -1 217 162 0 0 chrX 25181003 25181040 -151793100 - MIR3 SINE MIR -22 186 150 2460 128 25 0 chrX 25181302 25181655 -151792485 - THE1B LTR MaLR -2 362 1 322 388 63 34 chrX 25182594 25182831 -151791309 - L2 LINE L2 -9 3263 3020 408 313 162 35 chrX 25182856 25183183 -151790957 - L2 LINE L2 -1253 2061 1777 195 42 0 0 chrX 25183183 25183207 -151790933 + (TG)n Simple_repeat Simple_repeat 2 25 0 408 313 162 35 chrX 25183207 25183559 -151790581 - L2 LINE L2 -1537 1777 1296 324 206 59 0 chrX 25185999 25186067 -151788073 - MER5A DNA MER1_type -77 112 41 1062 312 213 10 chrX 25186621 25187343 -151786797 - L3 LINE CR1 -109 1468 600 198 209 0 0 chrX 25187581 25187624 -151786516 + GA-rich Low_complexity Low_complexity 1 43 0 664 261 77 24 chrX 25188924 25189031 -151785109 + L1ME3A LINE L1 5615 5715 -455 766 128 80 70 chrX 25189031 25189218 -151784922 - MER53 DNA DNA 0 189 1 664 261 77 24 chrX 25189218 25189397 -151784743 + L1ME3A LINE L1 5715 5916 -254 21 36 0 0 chrX 25189419 25189447 -151784693 + AT_rich Low_complexity Low_complexity 1 28 0 398 344 102 5 chrX 25189833 25190048 -151784092 - L2 LINE L2 -220 3052 2817 319 372 53 76 chrX 25190594 25190949 -151783191 - L2 LINE L2 -5 3267 2921 278 357 39 0 chrX 25191739 25191868 -151782272 - MIR SINE MIR -20 242 109 260 315 123 8 chrX 25192498 25192628 -151781512 - MIR3 SINE MIR -43 165 21 1398 159 23 5 chrX 25192903 25193123 -151781017 + MER58A DNA MER1_type 1 224 0 219 184 61 0 chrX 25193754 25193803 -151780337 - MIR3 SINE MIR -42 166 115 193 276 105 72 chrX 25194575 25194633 -151779507 - MIR3 SINE MIR -49 159 104 2152 248 74 25 chrX 25194633 25195265 -151778875 + MLT2F LTR ERVL 1 663 0 193 276 105 72 chrX 25195265 25195358 -151778782 - MIR3 SINE MIR -104 104 3 622 286 17 42 chrX 25196244 25196482 -151777658 + L2 LINE L2 2867 3098 -215 226 167 17 133 chrX 25196699 25196759 -151777381 - MER91C DNA MER1_type -63 77 25 409 333 56 0 chrX 25199079 25199223 -151774917 - MIR3 SINE MIR -24 184 33 263 213 40 40 chrX 25199986 25200061 -151774079 - MIR3 SINE MIR -49 159 85 5304 194 26 35 chrX 25200256 25201886 -151772254 - L1MD2 LINE L1 -16 6737 5124 936 210 41 0 chrX 25201886 25202129 -151772011 + MER69 DNA AcHobo 2183 2435 -91 3824 208 64 65 chrX 25202159 25203354 -151770786 - L1MD2 LINE L1 -1425 5115 3922 * 16432 170 22 9 chrX 25203352 25207120 -151767020 - L1MA5 LINE L1 -295 7424 3610 252 0 0 0 chrX 25207124 25207152 -151766988 + (TC)n Simple_repeat Simple_repeat 2 29 0 238 214 83 0 chrX 25207152 25207236 -151766904 + L1MC4 LINE L1 6614 6704 -1338 207 170 43 0 chrX 25207236 25207283 -151766857 + (TA)n Simple_repeat Simple_repeat 1 49 0 1590 186 4 7 chrX 25207286 25207560 -151766580 - AluJo SINE Alu -33 279 7 3757 237 54 32 chrX 25207565 25208900 -151765240 - L1MA5 LINE L1 -3960 3605 2242 1396 239 54 10 chrX 25208915 25209583 -151764557 - L1MD2 LINE L1 -3639 2901 2212 2450 89 48 20 chrX 25209583 25210061 -151764079 - LTR12 LTR ERV1 0 714 351 2970 205 74 21 chrX 25210061 25210104 -151764036 - L1MD2 LINE L1 -4628 1912 1873 279 0 0 0 chrX 25210104 25210135 -151764005 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2970 205 74 21 chrX 25210135 25211150 -151762990 - L1MD2 LINE L1 -4667 1873 828 302 333 29 0 chrX 25211277 25211382 -151762758 - L1MD2 LINE L1 -6120 423 316 686 256 5 44 chrX 25211676 25211879 -151762261 - L1MD2 LINE L1 -6329 211 17 55 48 0 0 chrX 25212350 25212433 -151761707 + AT_rich Low_complexity Low_complexity 1 83 0 38 68 0 0 chrX 25212646 25212719 -151761421 + AT_rich Low_complexity Low_complexity 1 73 0 563 287 62 21 chrX 25213594 25213980 -151760160 - L1MEc LINE L1 -855 1635 1306 372 298 58 78 chrX 25214012 25214254 -151759886 - L1MEc LINE L1 -4970 1149 913 2155 109 41 0 chrX 25214265 25214559 -151759581 + AluY SINE Alu 1 306 -5 21 57 0 0 chrX 25215282 25215317 -151758823 + AT_rich Low_complexity Low_complexity 1 35 0 589 341 108 45 chrX 25215716 25216764 -151757376 - L2 LINE L2 -2 3270 2150 282 321 88 23 chrX 25217134 25217349 -151756791 + L3b LINE CR1 1273 1501 -82 320 298 107 45 chrX 25217439 25217681 -151756459 + L2 LINE L2 2833 3089 -183 323 295 84 48 chrX 25217697 25217863 -151756277 - L2 LINE L2 -6 3307 3136 354 299 28 36 chrX 25217886 25218045 -151756095 - MLT1J1 LTR MaLR -46 465 243 1034 186 49 39 chrX 25218052 25218256 -151755884 + MER3 DNA MER1_type 1 206 -3 1322 228 115 29 chrX 25218382 25218798 -151755342 - HsTC2 DNA Tc2 0 1900 1273 * 3660 195 39 1 chrX 25218795 25219445 -151754695 - HsTC2 DNA Tc2 -1153 745 72 212 231 0 0 chrX 25219594 25219633 -151754507 + polypurine Low_complexity Low_complexity 2 40 0 237 159 0 0 chrX 25219673 25219717 -151754423 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 208 274 24 71 chrX 25221412 25221496 -151752644 - MIR SINE MIR -81 181 102 464 235 204 0 chrX 25221851 25221983 -151752157 - MLT1G1 LTR MaLR -14 528 370 719 219 164 44 chrX 25222020 25222294 -151751846 - MLT1G1 LTR MaLR -283 312 6 30 27 0 0 chrX 25222483 25222520 -151751620 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chrX 25223012 25223044 -151751096 + AT_rich Low_complexity Low_complexity 1 32 0 295 323 42 10 chrX 25223396 25223492 -151750648 - MIR3 SINE MIR -105 103 5 4042 112 11 4 chrX 25224486 25225039 -151749101 + L1PA15 LINE L1 5608 6164 -1 299 271 153 42 chrX 25225154 25225298 -151748842 + MIR3 SINE MIR 46 205 -3 203 298 71 0 chrX 25226152 25226236 -151747904 + L2 LINE L2 2961 3050 -222 554 309 72 39 chrX 25226354 25226820 -151747320 - MLT1K LTR MaLR 0 588 78 249 240 0 0 chrX 25226895 25226945 -151747195 + L2 LINE L2 3205 3254 -18 1647 274 21 38 chrX 25227673 25228246 -151745894 - MER115 DNA AcHobo -7 686 34 342 0 0 0 chrX 25228363 25228401 -151745739 + (CA)n Simple_repeat Simple_repeat 1 38 0 1138 308 65 38 chrX 25228598 25229076 -151745064 + LTR16C LTR ERVL 1 491 0 506 335 7 0 chrX 25229142 25229294 -151744846 - MIR SINE MIR -105 157 5 207 379 0 0 chrX 25229446 25229533 -151744607 + MIR SINE MIR 147 233 -29 375 253 94 24 chrX 25230747 25230931 -151743209 + MIR SINE MIR 32 220 -42 185 174 43 0 chrX 25231214 25231260 -151742880 - L2 LINE L2 -1553 1761 1714 319 139 125 28 chrX 25232915 25232987 -151741153 + LTR67 LTR ERVL 477 555 -2 647 305 109 52 chrX 25233003 25233442 -151740698 - L2 LINE L2 0 3272 2809 254 321 46 28 chrX 25233800 25233909 -151740231 + L2 LINE L2 2710 2820 -494 2690 212 52 118 chrX 25233975 25235236 -151738904 - L1MC4 LINE L1 -9 8033 6857 221 209 105 67 chrX 25235236 25235341 -151738799 - L2 LINE L2 -923 2391 2283 261 57 0 0 chrX 25235342 25235377 -151738763 + (CA)n Simple_repeat Simple_repeat 1 35 0 324 181 12 60 chrX 25235538 25235621 -151738519 + Charlie7 DNA MER1_type 29 107 -2505 294 206 38 46 chrX 25235606 25235737 -151738403 + Charlie7 DNA MER1_type 2434 2563 -49 * 329 318 107 34 chrX 25235754 25236081 -151738059 - L2 LINE L2 -1064 2250 1900 277 283 22 72 chrX 25236899 25237037 -151737103 + MIR SINE MIR 59 189 -73 1596 262 75 36 chrX 25237081 25237931 -151736209 - L2 LINE L2 0 3313 2422 261 309 18 45 chrX 25238005 25238115 -151736025 + MER117 DNA MER1_type 50 156 -41 1169 137 38 11 chrX 25238164 25238347 -151735793 + MER5A DNA MER1_type 1 188 -1 1143 134 0 11 chrX 25239068 25239314 -151734826 + AluJb SINE Alu 2 312 0 226 140 140 40 chrX 25239402 25239452 -151734688 + L1P3 LINE L1 689 743 -5132 1359 279 150 74 chrX 25239508 25240561 -151733579 - MER52A LTR ERV1 0 1755 623 293 320 155 53 chrX 25240768 25241389 -151732751 + L2 LINE L2 1919 2602 -712 273 255 166 82 chrX 25241383 25241751 -151732389 + L2 LINE L2 2839 3237 -35 * 295 340 107 7 chrX 25242197 25242347 -151731793 + L2 LINE L2 3104 3268 -4 871 272 168 37 chrX 25242947 25243351 -151730789 - LTR16A LTR ERVL 0 450 1 403 286 63 8 chrX 25243859 25243985 -151730155 - MIR3 SINE MIR -52 156 24 2281 106 0 0 chrX 25244030 25244331 -151729809 - AluSx SINE Alu -11 301 1 1125 229 40 8 chrX 25245544 25245793 -151728347 - MIR SINE MIR -2 260 4 510 227 100 0 chrX 25247072 25247182 -151726958 + MER96 DNA MER1_type? 13 133 -42 2985 68 3 0 chrX 25247848 25248215 -151725925 - L1PA6 LINE L1 0 6154 5787 1267 120 5 5 chrX 25248318 25248502 -151725638 - MER4E LTR ERV1 0 766 583 5327 110 26 62 chrX 25248505 25249362 -151724778 - LTR12 LTR ERV1 0 826 1 683 167 37 104 chrX 25249450 25249749 -151724391 - pTR5 LTR ERV1 -1418 1020 742 581 104 0 0 chrX 25249749 25249826 -151724314 - MADE1 DNA Mariner -1 79 3 983 101 0 63 chrX 25249826 25249984 -151724156 - MER4B LTR ERV1 -176 434 287 1721 168 46 37 chrX 25249984 25250362 -151723778 + MSTA LTR MaLR 1 428 0 1872 101 3 51 chrX 25250362 25250658 -151723482 - MER4B LTR ERV1 -319 291 10 320 317 50 0 chrX 25250698 25250818 -151723322 - L3b LINE CR1 -202 1381 1256 500 271 180 28 chrX 25252358 25252613 -151721527 - LTR16C LTR ERVL -9 482 189 243 350 48 0 chrX 25253814 25253917 -151720223 + MLT1K LTR MaLR 141 248 -340 578 242 73 64 chrX 25253963 25254010 -151720130 + MLT1K LTR MaLR 368 413 -175 2831 16 0 13 chrX 25254010 25254325 -151719815 + AluYa5 SINE Alu 1 311 0 578 242 73 64 chrX 25254325 25254496 -151719644 + MLT1K LTR MaLR 413 588 0 1131 216 73 70 chrX 25254584 25254969 -151719171 + MLT1C LTR MaLR 76 461 -6 36 0 0 0 chrX 25255030 25255066 -151719074 + AT_rich Low_complexity Low_complexity 1 36 0 715 269 14 55 chrX 25255180 25255399 -151718741 + MIR SINE MIR 43 252 -10 360 161 12 37 chrX 25255462 25255543 -151718597 + L1M4 LINE L1 2933 3011 -3135 * 942 214 0 48 chrX 25255542 25255654 -151718486 + L1M4 LINE L1 3796 3912 -2234 767 158 0 22 chrX 25255654 25255793 -151718347 + L1PA8 LINE L1 6037 6172 0 942 214 0 48 chrX 25255793 25255869 -151718271 + L1M4 LINE L1 3912 3972 -2174 485 70 127 0 chrX 25255869 25255940 -151718200 - MADE1 DNA Mariner 0 80 1 942 214 0 48 chrX 25255940 25255998 -151718142 + L1M4 LINE L1 3972 4031 -2115 1994 128 14 7 chrX 25256019 25256348 -151717792 + AluSx SINE Alu 1 331 0 4935 88 24 15 chrX 25256353 25257025 -151717115 - L1PA12 LINE L1 -15 6153 5476 942 37 0 0 chrX 25257040 25257149 -151716991 - L1PA4 LINE L1 -3 6152 6044 17642 165 27 6 chrX 25257149 25258893 -151715247 - L1PA12 LINE L1 -678 5483 3777 180 0 0 0 chrX 25258893 25258913 -151715227 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 17642 165 27 6 chrX 25258913 25260532 -151713608 - L1PA12 LINE L1 -2384 3777 2059 734 151 9 0 chrX 25260535 25260641 -151713499 - U6 snRNA snRNA 0 107 1 1094 214 48 45 chrX 25260649 25261027 -151713113 + L1M4 LINE L1 4033 4411 -1735 236 269 0 0 chrX 25261027 25261079 -151713061 + Tigger5 DNA MER2_type 4 55 -2268 * 315 235 15 15 chrX 25261048 25261116 -151713024 + Tigger5 DNA MER2_type 2251 2318 -5 470 213 2 0 chrX 25261119 25261220 -151712920 - Tigger5 DNA MER2_type -2235 88 7 502 200 0 0 chrX 25261235 25261320 -151712820 + Tigger5 DNA MER2_type 2239 2323 0 10646 155 23 13 chrX 25261362 25262087 -151712053 - L1P LINE L1 -1723 4423 3707 180 0 0 0 chrX 25262087 25262107 -151712033 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 10646 155 23 13 chrX 25262107 25263726 -151710414 - L1P LINE L1 -2439 3707 2059 687 151 9 0 chrX 25263729 25263835 -151710305 - U6 snRNA snRNA 0 107 1 1032 225 45 42 chrX 25263843 25264221 -151709919 + L1M4 LINE L1 4033 4411 -1735 231 269 0 0 chrX 25264221 25264273 -151709867 + Tigger5 DNA MER2_type 4 55 -2268 * 308 235 15 15 chrX 25264242 25264310 -151709830 + Tigger5 DNA MER2_type 2251 2318 -5 466 213 2 0 chrX 25264313 25264414 -151709726 - Tigger5 DNA MER2_type -2235 88 7 492 200 0 0 chrX 25264429 25264514 -151709626 + Tigger5 DNA MER2_type 2239 2323 0 1794 214 39 19 chrX 25264529 25264997 -151709143 + L1ME1 LINE L1 5671 6147 -19 13577 187 76 13 chrX 25265020 25265549 -151708591 + L1MB3 LINE L1 4 498 -5884 727 201 0 8 chrX 25265549 25265683 -151708457 + FLAM_C SINE Alu 1 133 0 13577 187 76 13 chrX 25265683 25268992 -151705148 + L1MB3 LINE L1 498 4103 -2279 3120 144 20 6 chrX 25268992 25269499 -151704641 + MER75 DNA T2_type 1 514 0 13577 187 76 13 chrX 25269499 25269514 -151704626 + L1MB3 LINE L1 4103 4116 -2266 25961 88 32 20 chrX 25269517 25270023 -151704117 + L1PA7 LINE L1 1338 1836 -4318 2325 90 3 3 chrX 25270023 25270333 -151703807 - AluY SINE Alu -1 310 1 25961 88 32 20 chrX 25270333 25270787 -151703353 + L1PA7 LINE L1 1836 2283 -3871 231 88 0 0 chrX 25270787 25270821 -151703319 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 25961 88 32 20 chrX 25270821 25272457 -151701683 + L1PA7 LINE L1 2283 3898 -2256 2726 16 0 3 chrX 25272457 25272760 -151701380 + AluYa5 SINE Alu 1 302 -9 25961 88 32 20 chrX 25272760 25274920 -151699220 + L1PA7 LINE L1 3898 6154 0 4205 163 12 3 chrX 25274928 25275675 -151698465 + L1MB3 LINE L1 5664 6417 -2 229 292 0 0 chrX 25275723 25275788 -151698352 - MIR SINE MIR -9 253 189 350 219 237 6 chrX 25275806 25275951 -151698189 - MER5A DNA MER1_type 0 189 6 308 258 67 22 chrX 25276882 25276971 -151697169 - L1ME2 LINE L1 0 6164 6072 597 65 103 0 chrX 25276992 25277394 -151696746 + (TA)n Simple_repeat Simple_repeat 1 443 0 455 225 132 61 chrX 25277787 25278068 -151696072 - MLT1H LTR MaLR -214 335 1 771 115 0 16 chrX 25278676 25278798 -151695342 + MER2 DNA MER2_type 88 207 -138 672 245 65 0 chrX 25278875 25279138 -151695002 + L1MD2 LINE L1 2376 2657 -3883 6778 125 7 3 chrX 25279155 25281075 -151693065 - L1PA13 LINE L1 -47 6116 4192 1629 238 14 2 chrX 25281073 25281493 -151692647 + L1MD2 LINE L1 2654 3078 -3462 * 1375 89 0 38 chrX 25281497 25281710 -151692430 - AluY SINE Alu 0 311 107 1783 253 37 9 chrX 25281711 25282363 -151691777 + L1MD2 LINE L1 3070 3739 -2801 4524 226 48 44 chrX 25282410 25283535 -151690605 + L1MD2 LINE L1 4081 5200 -1553 240 86 0 0 chrX 25283535 25283570 -151690570 + (CATA)n Simple_repeat Simple_repeat 2 36 0 4524 226 48 44 chrX 25283570 25285090 -151689050 + L1MD2 LINE L1 5200 6740 -13 2449 70 0 0 chrX 25285288 25285589 -151688551 - AluY SINE Alu -10 301 1 1754 247 80 8 chrX 25285753 25286230 -151687910 - MLT1E2 LTR MaLR 0 626 116 8220 178 50 11 chrX 25286234 25286280 -151687860 - L1MB2 LINE L1 0 6407 6364 2352 90 3 0 chrX 25286280 25286580 -151687560 - AluSp SINE Alu -12 301 1 8220 178 50 11 chrX 25286580 25288991 -151685149 - L1MB2 LINE L1 -43 6364 3844 3733 238 70 21 chrX 25288995 25290006 -151684134 - L1MB2 LINE L1 -2866 3516 2556 1288 115 0 10 chrX 25290006 25290198 -151683942 + L1PA15 LINE L1 5963 6152 -13 3733 238 70 21 chrX 25290198 25291462 -151682678 - L1MB2 LINE L1 -3826 2556 1130 584 280 72 88 chrX 25291684 25292084 -151682056 - L1MB2 LINE L1 -5497 806 413 312 181 352 0 chrX 25292121 25292226 -151681914 - MLT1E2 LTR MaLR -510 144 3 296 274 14 82 chrX 25292230 25292376 -151681764 - MLT1H LTR MaLR -32 517 382 697 253 49 41 chrX 25292406 25292659 -151681481 - MLT1H LTR MaLR -253 296 1 941 265 53 4 chrX 25293389 25293634 -151680506 - MIR SINE MIR 0 262 6 261 57 0 0 chrX 25293638 25293673 -151680467 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 252 52 0 chrX 25293691 25293806 -151680334 + L1ME4a LINE L1 5991 6111 -10 446 280 15 0 chrX 25293903 25294035 -151680105 - MLT1L LTR MaLR -143 472 339 538 243 22 29 chrX 25294361 25294497 -151679643 + MIR3 SINE MIR 40 174 -34 465 34 0 0 chrX 25294867 25294926 -151679214 + (TC)n Simple_repeat Simple_repeat 2 60 0 270 0 0 0 chrX 25294925 25294955 -151679185 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 2282 179 44 2 chrX 25295107 25295514 -151678626 + MSTB1 LTR MaLR 4 427 -5 488 303 96 22 chrX 25297011 25297377 -151676763 + L1ME4a LINE L1 5500 5892 -229 33 43 0 0 chrX 25297648 25297695 -151676445 + AT_rich Low_complexity Low_complexity 1 47 0 321 331 15 7 chrX 25297747 25297883 -151676257 + L1ME LINE L1 5257 5393 -769 315 305 105 0 chrX 25297920 25298084 -151676056 + L1ME LINE L1 5480 5657 -505 311 189 27 45 chrX 25298197 25298308 -151675832 - LTR16A1 LTR ERVL -82 375 267 28 0 0 0 chrX 25298621 25298649 -151675491 + AT_rich Low_complexity Low_complexity 1 28 0 256 233 33 0 chrX 25298860 25298920 -151675220 + L2 LINE L2 3208 3269 -3 568 173 0 23 chrX 25299210 25299343 -151674797 + L1MB7 LINE L1 6037 6166 -18 3784 110 46 5 chrX 25299343 25299943 -151674197 + L1MA5 LINE L1 5662 6295 -5 1954 121 43 67 chrX 25300881 25301254 -151672886 + THE1B LTR MaLR 1 364 0 1554 244 78 17 chrX 25301338 25301801 -151672339 - LTR16C LTR ERVL 0 491 1 453 248 233 48 chrX 25302311 25302521 -151671619 + MIR SINE MIR 2 250 -12 193 384 30 10 chrX 25303724 25303823 -151670317 - L2 LINE L2 -213 3059 2959 437 334 90 17 chrX 25304064 25304408 -151669732 - L1MC4a LINE L1 -1876 5932 5564 957 246 137 23 chrX 25304410 25304797 -151669343 - L2 LINE L2 -3 3310 2880 192 289 66 13 chrX 25304813 25304889 -151669251 + MIR SINE MIR 166 245 -17 652 264 91 54 chrX 25305552 25305865 -151668275 + L1ME LINE L1 5378 5711 -410 2383 140 40 26 chrX 25305865 25306293 -151667847 + Tigger2a DNA MER2_type 1 434 0 652 264 91 54 chrX 25306293 25306385 -151667755 + L1ME LINE L1 5711 5798 -323 3105 182 80 18 chrX 25307325 25307955 -151666185 + L1ME2 LINE L1 5447 6123 -41 2372 151 8 8 chrX 25307955 25308345 -151665795 - MLT1B LTR MaLR 0 390 1 3105 182 80 18 chrX 25308345 25308390 -151665750 + L1ME2 LINE L1 6123 6164 0 945 219 31 10 chrX 25308537 25308729 -151665411 - MIR SINE MIR -55 207 12 211 237 0 0 chrX 25308891 25308929 -151665211 + L2 LINE L2 3254 3291 -22 243 244 49 24 chrX 25309102 25309184 -151664956 - L1ME3A LINE L1 -146 6024 5941 994 198 14 19 chrX 25309189 25309396 -151664744 - MLT1C LTR MaLR -2 465 260 238 143 48 0 chrX 25309382 25309424 -151664716 - MLT1C LTR MaLR -423 44 1 * 236 192 0 0 chrX 25309474 25309526 -151664614 + T-rich Low_complexity Low_complexity 1 52 0 7744 23 0 0 chrX 25309527 25310563 -151663577 - L1PA3 LINE L1 -3 6152 5117 1441 259 32 28 chrX 25310563 25311035 -151663105 - L1ME3A LINE L1 -278 5892 5419 236 268 0 0 chrX 25313376 25313432 -151660708 + MLT1K LTR MaLR 23 78 -471 3934 171 83 16 chrX 25313433 25314207 -151659933 - LTR1B LTR ERV1 0 826 1 555 204 8 30 chrX 25314572 25314704 -151659436 - MIR SINE MIR -87 175 47 534 224 194 6 chrX 25315194 25315359 -151658781 + MIR SINE MIR 12 207 -55 381 252 143 15 chrX 25315362 25315576 -151658564 - MLT1L LTR MaLR -4 606 329 370 264 124 31 chrX 25316432 25316561 -151657579 + MLT1K LTR MaLR 102 242 -346 1373 206 30 99 chrX 25316721 25317124 -151657016 + MLT1B LTR MaLR 1 375 -15 3063 173 68 44 chrX 25317435 25318145 -151655995 - LTR8A LTR ERV1 0 727 1 1985 122 0 4 chrX 25319249 25319528 -151654612 + AluSx SINE Alu 1 278 -34 276 53 0 0 chrX 25319529 25319567 -151654573 + (CA)n Simple_repeat Simple_repeat 1 38 0 228 361 0 24 chrX 25320624 25320707 -151653433 - MER115 DNA AcHobo -612 81 1 1556 213 104 0 chrX 25321200 25321594 -151652546 + Charlie4a DNA MER1_type 74 508 0 475 290 153 61 chrX 25321938 25322362 -151651778 + MLT1K LTR MaLR 126 588 0 303 282 24 0 chrX 25322499 25322584 -151651556 - MIR SINE MIR -122 140 54 502 235 6 6 chrX 25322993 25323159 -151650981 + CT-rich Low_complexity Low_complexity 3 168 0 560 275 64 40 chrX 25323623 25323874 -151650266 - MIR SINE MIR 0 262 6 288 307 95 28 chrX 25324197 25324376 -151649764 + MIR3 SINE MIR 17 207 -1 447 244 165 57 chrX 25324575 25324805 -151649335 + MIR SINE MIR 8 262 0 537 326 102 18 chrX 25324976 25325319 -151648821 - LTR16A LTR ERVL -78 372 1 694 287 77 41 chrX 25326600 25327059 -151647081 - LTR16A1 LTR ERVL -5 452 3 296 299 128 27 chrX 25328531 25328692 -151645448 - MER5A DNA MER1_type -6 174 2 2100 127 9 96 chrX 25328700 25329126 -151645014 - MLT1B LTR MaLR -1 389 1 393 58 0 0 chrX 25329725 25329777 -151644363 + (TC)n Simple_repeat Simple_repeat 2 53 0 916 300 21 4 chrX 25330476 25330716 -151643424 + MIR SINE MIR 19 262 0 361 323 30 12 chrX 25330940 25331104 -151643036 - L2 LINE L2 -234 3038 2872 355 230 27 0 chrX 25332553 25332627 -151641513 + MIR SINE MIR 42 117 -91 25 65 0 0 chrX 25333587 25333633 -151640507 + AT_rich Low_complexity Low_complexity 1 46 0 1142 270 137 42 chrX 25333933 25334071 -151640069 - L1ME4a LINE L1 -27 6094 5971 186 43 0 0 chrX 25334071 25334094 -151640046 + (CA)n Simple_repeat Simple_repeat 1 23 0 1142 270 137 42 chrX 25334094 25334670 -151639470 - L1ME4a LINE L1 -150 5971 5312 2235 99 0 3 chrX 25334787 25335091 -151639049 - AluSx SINE Alu -9 303 1 182 244 24 0 chrX 25335508 25335549 -151638591 - MIR SINE MIR -142 66 25 341 205 26 26 chrX 25335869 25335947 -151638193 - L2 LINE L2 0 3272 3195 225 306 42 0 chrX 25335997 25336069 -151638071 - L2 LINE L2 -221 3051 2977 1034 211 133 31 chrX 25336179 25336473 -151637667 - MER5C DNA MER1_type 0 324 1 370 294 75 12 chrX 25336484 25336644 -151637496 - L2 LINE L2 -1315 1999 1830 470 259 19 22 chrX 25336802 25337001 -151637139 + MIR3 SINE MIR 4 202 -6 528 16 0 0 chrX 25338024 25338085 -151636055 + (CA)n Simple_repeat Simple_repeat 1 61 0 29 0 0 0 chrX 25339111 25339140 -151635000 + AT_rich Low_complexity Low_complexity 1 29 0 323 206 41 27 chrX 25339248 25339321 -151634819 - L2 LINE L2 -2 3270 3197 * 354 299 162 10 chrX 25339320 25339517 -151634623 + MIR SINE MIR 28 254 -8 302 251 205 54 chrX 25340516 25340755 -151633385 - LTR16A1 LTR ERVL -180 277 3 230 293 40 20 chrX 25340763 25340862 -151633278 - MIR SINE MIR -56 206 106 252 59 0 0 chrX 25341122 25341156 -151632984 + (TG)n Simple_repeat Simple_repeat 1 34 0 466 306 16 38 chrX 25341219 25341684 -151632456 + CT-rich Low_complexity Low_complexity 1 454 0 21 0 0 0 chrX 25341920 25341941 -151632199 + GC_rich Low_complexity Low_complexity 1 21 0 182 330 11 43 chrX 25342583 25342677 -151631463 - MIR SINE MIR -55 207 117 236 242 44 77 chrX 25342703 25342794 -151631346 + MER91B DNA MER1_type 1 88 -102 808 252 80 52 chrX 25342979 25343304 -151630836 + MLT1H LTR MaLR 216 549 0 544 239 25 43 chrX 25343505 25343668 -151630472 - MIR SINE MIR -96 166 7 610 216 112 0 chrX 25344080 25344205 -151629935 - MIR SINE MIR -116 146 8 464 269 108 24 chrX 25344788 25344955 -151629185 - MIR SINE MIR -1 261 81 326 291 8 0 chrX 25345337 25345454 -151628686 + (TG)n Simple_repeat Simple_repeat 1 118 0 198 0 0 0 chrX 25346704 25346726 -151627414 + (CTG)n Simple_repeat Simple_repeat 2 23 0 40 0 0 0 chrX 25348465 25348505 -151625635 + AT_rich Low_complexity Low_complexity 1 40 0 668 170 52 7 chrX 25348608 25348743 -151625397 + MER5A DNA MER1_type 1 141 -48 626 261 8 0 chrX 25348907 25349041 -151625099 - LTR16A LTR ERVL -5 445 311 731 279 117 44 chrX 25349055 25349464 -151624676 - L2 LINE L2 -527 2787 2349 201 175 0 0 chrX 25349590 25349630 -151624510 + GA-rich Low_complexity Low_complexity 6 45 0 911 303 24 8 chrX 25349644 25349898 -151624242 - MIR SINE MIR 0 262 5 441 315 14 7 chrX 25349991 25350134 -151624006 - MIR SINE MIR -115 147 4 1363 141 0 23 chrX 25350439 25350659 -151623481 + AluJb SINE Alu 84 298 -14 1024 230 50 0 chrX 25350805 25351027 -151623113 + MLT1E1 LTR MaLR 419 651 -3 2211 246 70 9 chrX 25351076 25351601 -151622539 + MLT1G LTR MaLR 32 588 -2 229 240 27 42 chrX 25351761 25351841 -151622299 - MIR SINE MIR -69 139 72 383 284 0 21 chrX 25353192 25353287 -151620853 - MIR SINE MIR -70 192 100 1050 256 81 77 chrX 25353434 25353965 -151620175 - MLT1H1 LTR MaLR 0 555 23 2008 177 37 8 chrX 25355140 25355519 -151618621 - MLT1B LTR MaLR 0 390 1 2090 116 7 0 chrX 25355863 25356166 -151617974 + AluSc SINE Alu 4 308 -1 584 27 14 0 chrX 25356172 25356246 -151617894 + (GAAA)n Simple_repeat Simple_repeat 4 78 0 271 265 48 36 chrX 25356326 25356409 -151617731 + MIR SINE MIR 63 146 -62 1727 147 3 36 chrX 25356706 25357012 -151617128 - AluJb SINE Alu -6 306 11 321 26 0 0 chrX 25357093 25357131 -151617009 + (TC)n Simple_repeat Simple_repeat 1 38 0 1430 235 121 14 chrX 25357157 25357593 -151616547 + L2 LINE L2 2528 2999 -314 4283 203 48 127 chrX 25357731 25359739 -151614401 - L1MDb LINE L1 -1271 5135 3285 * 30628 53 2 0 chrX 25359724 25365854 -151608286 - L1PA5 LINE L1 0 6154 11 3143 240 28 23 chrX 25365861 25366252 -151607888 - L1MDb LINE L1 -3108 3298 2911 2134 131 0 7 chrX 25366252 25366550 -151607590 + AluSx SINE Alu 1 296 -16 3143 240 28 23 chrX 25366550 25367183 -151606957 - L1MDb LINE L1 -3495 2911 2307 1132 208 23 15 chrX 25367164 25367429 -151606711 - L1MD3 LINE L1 0 7995 7729 * 4239 227 72 23 chrX 25367435 25368941 -151605199 - L1MDb LINE L1 -4104 2302 770 619 321 12 0 chrX 25369528 25369768 -151604372 + L2 LINE L2 2104 2346 -968 1015 265 117 9 chrX 25369768 25370373 -151603767 + L2 LINE L2 2626 3313 0 244 270 0 0 chrX 25371494 25371510 -151602630 - L1MA10 LINE L1 -1 6333 6318 2574 195 102 15 chrX 25371510 25372099 -151602041 - L1ME2 LINE L1 -9 6155 5516 293 265 87 41 chrX 25372343 25372515 -151601625 + MIR SINE MIR 3 181 -58 213 222 128 86 chrX 25372782 25372899 -151601241 + MIR SINE MIR 64 185 -23 286 191 155 0 chrX 25373070 25373154 -151600986 + MIR SINE MIR 100 196 -66 1065 264 77 47 chrX 25373309 25373711 -151600429 - LTR16A LTR ERVL -10 440 27 561 226 8 0 chrX 25373716 25373849 -151600291 + MIR SINE MIR 102 235 -27 2172 181 48 7 chrX 25375473 25375888 -151598252 - MSTB1 LTR MaLR 0 432 1 440 314 96 57 chrX 25376649 25377120 -151597020 - LTR16C LTR ERVL -2 489 1 195 329 76 0 chrX 25377175 25377254 -151596886 - MIR3 SINE MIR -37 171 87 1443 195 137 89 chrX 25377623 25377929 -151596211 + MLT1F1 LTR MaLR 1 369 -198 5738 21 0 5 chrX 25377929 25378579 -151595561 + L1PA3 LINE L1 5509 6155 0 1443 195 137 89 chrX 25378579 25378789 -151595351 + MLT1F1 LTR MaLR 369 567 0 228 241 19 0 chrX 25378847 25378901 -151595239 - MLT1K LTR MaLR -25 563 509 2782 176 11 11 chrX 25379139 25379602 -151594538 + MLT2B1 LTR ERVL 1 466 -54 1049 45 45 0 chrX 25379602 25379759 -151594381 + (TTTC)n Simple_repeat Simple_repeat 4 167 0 2782 176 11 11 chrX 25379759 25379771 -151594369 + MLT2B1 LTR ERVL 465 476 -44 281 175 258 10 chrX 25379771 25379868 -151594272 + MLT2B1 LTR ERVL 400 520 0 297 287 92 37 chrX 25380187 25380351 -151593789 + MIR3 SINE MIR 30 202 -6 207 356 0 26 chrX 25381566 25381681 -151592459 + GA-rich Low_complexity Low_complexity 1 112 0 207 0 0 0 chrX 25381782 25381805 -151592335 + (CAA)n Simple_repeat Simple_repeat 2 24 0 293 110 0 55 chrX 25382414 25382487 -151591653 + (TTTC)n Simple_repeat Simple_repeat 3 71 0 273 325 0 0 chrX 25382571 25382654 -151591486 - L2 LINE L2 -4 3268 3186 350 227 67 50 chrX 25383417 25383536 -151590604 + MLT1J LTR MaLR 1 121 -390 293 300 0 10 chrX 25383890 25383990 -151590150 - LTR33A LTR ERVL -2 521 423 825 266 196 6 chrX 25384029 25384386 -151589754 + LTR16A LTR ERVL 26 450 0 288 286 84 80 chrX 25384586 25384799 -151589341 - LTR33A LTR ERVL -307 216 3 1070 179 0 36 chrX 25384873 25385068 -151589072 + MLT1E LTR MaLR 406 593 0 526 257 14 7 chrX 25385315 25385459 -151588681 - MER5B DNA MER1_type 0 178 34 793 163 31 31 chrX 25385468 25385628 -151588512 - MER96B DNA MER1_type? -8 409 250 720 249 6 40 chrX 25385960 25386133 -151588007 - MER63A DNA MER1_type 0 210 44 275 266 73 33 chrX 25386597 25386748 -151587392 + MIR SINE MIR 52 207 -55 2386 184 55 63 chrX 25387494 25388081 -151586059 + MLT1G LTR MaLR 9 590 0 292 400 0 0 chrX 25388330 25388440 -151585700 - L2 LINE L2 0 3313 3204 1988 206 61 26 chrX 25388454 25388945 -151585195 - Charlie4a DNA MER1_type 0 508 1 1638 196 109 34 chrX 25389003 25389472 -151584668 - MLT1D LTR MaLR 0 505 2 265 317 73 61 chrX 25389512 25390015 -151584125 - L2 LINE L2 -218 3054 2553 591 283 111 31 chrX 25390912 25391114 -151583026 - LTR16C LTR ERVL 0 491 268 2847 115 31 2 chrX 25391114 25391530 -151582610 - MSTA LTR MaLR 0 428 1 591 283 111 31 chrX 25391530 25391553 -151582587 - LTR16C LTR ERVL -223 268 248 * 2438 88 9 12 chrX 25391551 25391881 -151582259 + THE1C LTR MaLR 47 375 0 509 258 120 47 chrX 25391881 25392114 -151582026 - LTR16C LTR ERVL -241 250 1 191 377 33 25 chrX 25394133 25394255 -151579885 + L2 LINE L2 3150 3272 0 436 295 31 8 chrX 25395185 25395314 -151578826 + L2 LINE L2 3141 3272 0 361 289 75 40 chrX 25395691 25395837 -151578303 + LTR33 LTR ERVL 76 215 -306 2265 156 50 79 chrX 25395837 25396028 -151578112 + MLT1D LTR MaLR 1 196 -309 2083 139 0 0 chrX 25396028 25396330 -151577810 + AluSx SINE Alu 1 302 -10 2265 156 50 79 chrX 25396330 25396658 -151577482 + MLT1D LTR MaLR 196 505 0 361 289 75 40 chrX 25396658 25396890 -151577250 + LTR33 LTR ERVL 215 506 -15 613 306 69 51 chrX 25397424 25397816 -151576324 + LTR16C LTR ERVL 93 491 0 1155 188 103 19 chrX 25398344 25398687 -151575453 - MLT1E LTR MaLR -2 591 231 332 119 254 0 chrX 25398684 25398751 -151575389 - MLT1E LTR MaLR -570 84 1 * 1377 179 66 127 chrX 25399305 25399802 -151574338 - MLT1C LTR MaLR 0 467 1 259 292 62 103 chrX 25400105 25400396 -151573744 + L2 LINE L2 2990 3268 -4 577 294 42 49 chrX 25400870 25401138 -151573002 - MLT1H1 LTR MaLR -300 267 1 192 282 97 0 chrX 25401242 25401345 -151572795 + MIR SINE MIR 73 185 -77 667 249 37 32 chrX 25402104 25402293 -151571847 + MIR SINE MIR 73 262 0 870 202 46 63 chrX 25402528 25402660 -151571480 - MIR SINE MIR -1 261 133 1809 191 24 22 chrX 25402660 25403031 -151571109 - MLT1A2 LTR MaLR 0 374 3 870 202 46 63 chrX 25403031 25403136 -151571004 - MIR SINE MIR -129 133 28 1023 228 107 91 chrX 25403203 25403684 -151570456 - MLT1H LTR MaLR -1 548 36 238 185 56 0 chrX 25403759 25403813 -151570327 - MLT1K LTR MaLR -10 578 522 1649 177 16 26 chrX 25403820 25404125 -151570015 + AluJo SINE Alu 1 302 -10 573 279 172 17 chrX 25404245 25404478 -151569662 - MLT1K LTR MaLR -201 387 119 840 202 109 11 chrX 25404485 25404668 -151569472 + MER63A DNA MER1_type 9 209 -1 21 36 0 0 chrX 25404840 25404868 -151569272 + AT_rich Low_complexity Low_complexity 1 28 0 766 278 57 4 chrX 25405046 25405294 -151568846 - MIR SINE MIR 0 262 2 257 129 0 48 chrX 25406552 25406614 -151567526 + (T)n Simple_repeat Simple_repeat 1 59 0 261 180 0 0 chrX 25406935 25406985 -151567155 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 53 0 0 chrX 25407559 25407597 -151566543 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chrX 25407627 25407648 -151566492 + (TG)n Simple_repeat Simple_repeat 1 21 0 221 30 61 0 chrX 25407685 25407718 -151566422 + GA-rich Low_complexity Low_complexity 4 38 0 257 293 37 0 chrX 25408392 25408474 -151565666 - MIR SINE MIR -17 245 161 365 195 39 0 chrX 25408475 25408552 -151565588 - MER116 DNA Mariner 0 80 1 355 238 81 2 chrX 25408552 25408686 -151565454 - MIR SINE MIR -58 150 11 280 345 18 0 chrX 25408705 25408815 -151565325 - MIR SINE MIR -101 161 50 1495 280 67 11 chrX 25409138 25409603 -151564537 - LTR16C LTR ERVL 0 491 1 474 222 196 13 chrX 25410474 25410627 -151563513 + MER5A DNA MER1_type 9 189 0 623 267 10 90 chrX 25411092 25411380 -151562760 + MLT1H LTR MaLR 47 311 -238 284 271 33 25 chrX 25411549 25411671 -151562469 + MIR SINE MIR 111 233 -29 22 0 0 0 chrX 25411680 25411702 -151562438 + AT_rich Low_complexity Low_complexity 1 22 0 1066 259 128 34 chrX 25414210 25414315 -151559825 - MLT1H LTR MaLR 0 549 455 186 71 0 0 chrX 25414315 25414343 -151559797 + (GCTTG)n Simple_repeat Simple_repeat 1 28 0 1066 259 128 34 chrX 25414343 25414739 -151559401 - MLT1H LTR MaLR -94 455 1 249 139 0 0 chrX 25416150 25416193 -151557947 + (TG)n Simple_repeat Simple_repeat 2 44 0 834 269 10 0 chrX 25416729 25416930 -151557210 + MIR SINE MIR 12 214 -48 190 355 140 0 chrX 25417226 25417319 -151556821 - L2 LINE L2 -10 3303 3198 767 215 24 43 chrX 25417429 25417638 -151556502 - L1ME3A LINE L1 -1 6169 5965 1978 237 73 36 chrX 25418262 25418824 -151555316 - MLT1G LTR MaLR 0 590 8 865 254 12 4 chrX 25418833 25419073 -151555067 + MIR SINE MIR 10 251 -11 323 318 108 6 chrX 25419267 25419443 -151554697 - MIR SINE MIR -50 212 19 33 25 0 0 chrX 25419485 25419525 -151554615 + AT_rich Low_complexity Low_complexity 1 40 0 446 334 7 14 chrX 25420155 25420333 -151553807 + MIR3 SINE MIR 20 197 -11 190 348 0 52 chrX 25422603 25422718 -151551422 - MIR SINE MIR -57 151 43 375 327 80 15 chrX 25423455 25423654 -151550486 - L2 LINE L2 0 3272 3061 216 328 56 56 chrX 25424237 25424362 -151549778 + MER5A DNA MER1_type 26 150 -39 1220 224 0 0 chrX 25424576 25424799 -151549341 - MER58A DNA MER1_type 0 224 2 1077 202 5 5 chrX 25424919 25425107 -151549033 - MER5A DNA MER1_type -1 188 1 258 309 99 0 chrX 25425547 25425628 -151548512 + L2 LINE L2 3134 3222 -50 4038 149 66 13 chrX 25425774 25426490 -151547650 + L1MB7 LINE L1 5431 6184 0 817 52 17 0 chrX 25426624 25426739 -151547401 + (TA)n Simple_repeat Simple_repeat 1 117 0 2433 230 63 59 chrX 25428520 25429382 -151544758 - L1ME LINE L1 -5177 893 29 188 241 103 0 chrX 25429799 25429857 -151544283 - MIR SINE MIR -70 192 129 198 150 0 0 chrX 25429965 25430005 -151544135 + (TAA)n Simple_repeat Simple_repeat 2 41 0 276 206 31 194 chrX 25430801 25430899 -151543241 + MIR3 SINE MIR 61 125 -83 761 148 9 0 chrX 25430899 25431014 -151543126 + FLAM_A SINE Alu 1 116 -17 276 206 31 194 chrX 25431014 25431075 -151543065 + MIR3 SINE MIR 125 194 -14 204 179 0 0 chrX 25431900 25431939 -151542201 + GA-rich Low_complexity Low_complexity 2 40 0 314 258 180 16 chrX 25432100 25432226 -151541914 - LTR16C LTR ERVL -73 418 272 1254 216 133 38 chrX 25432226 25432648 -151541492 - MLT1C LTR MaLR 0 467 6 960 270 106 32 chrX 25434012 25434416 -151539724 - MLT1J1 LTR MaLR -11 435 2 825 265 121 30 chrX 25434495 25434716 -151539424 - MLT1H1 LTR MaLR -96 499 300 1469 172 45 26 chrX 25434716 25434824 -151539316 + AluJo SINE Alu 16 120 -192 273 57 0 0 chrX 25434824 25434859 -151539281 + (TAA)n Simple_repeat Simple_repeat 2 36 0 1469 172 45 26 chrX 25434859 25435018 -151539122 + AluJo SINE Alu 120 288 -24 825 265 121 30 chrX 25435018 25435188 -151538952 - MLT1H1 LTR MaLR -295 300 60 2069 177 25 0 chrX 25435188 25435544 -151538596 - MLT1A1 LTR MaLR 0 365 1 825 265 121 30 chrX 25435544 25435576 -151538564 - MLT1H1 LTR MaLR -535 60 32 266 340 60 0 chrX 25435916 25436016 -151538124 + L2 LINE L2 3158 3263 -9 181 316 22 84 chrX 25436213 25436488 -151537652 + L2 LINE L2 73 330 -2984 342 268 108 77 chrX 25436877 25437071 -151537069 + L2 LINE L2 327 526 -2788 2092 188 23 21 chrX 25437122 25437510 -151536630 + MSTB LTR MaLR 38 426 0 1320 278 86 7 chrX 25437528 25437956 -151536184 - LTR16B LTR ERVL -2 462 1 2782 263 104 18 chrX 25437958 25439139 -151535001 + L2 LINE L2 570 1852 -1462 180 0 0 0 chrX 25439493 25439513 -151534627 + (A)n Simple_repeat Simple_repeat 1 20 0 240 351 0 22 chrX 25440150 25440311 -151533829 - MIR SINE MIR -72 190 37 216 0 0 0 chrX 25441128 25441152 -151532988 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chrX 25441658 25441679 -151532461 + AT_rich Low_complexity Low_complexity 1 21 0 864 328 40 9 chrX 25441921 25442247 -151531893 - LTR16C LTR ERVL 0 491 156 5736 123 72 2 chrX 25442465 25443950 -151530190 + L1PBa LINE L1 2056 3649 -3213 617 251 80 12 chrX 25444141 25444304 -151529836 + MER96 DNA MER1_type 2 175 0 368 291 84 63 chrX 25445547 25445760 -151528380 - L2 LINE L2 -471 2843 2623 2357 62 13 13 chrX 25445760 25446067 -151528073 + AluY SINE Alu 1 307 -4 368 291 84 63 chrX 25446067 25446090 -151528050 - L2 LINE L2 -691 2623 2602 182 256 58 35 chrX 25446227 25446313 -151527827 - L2 LINE L2 -919 2395 2308 455 250 0 0 chrX 25446316 25446404 -151527736 - MER81 DNA DNA -21 93 6 219 365 48 24 chrX 25447443 25447569 -151526571 + L2 LINE L2 3144 3272 0 7265 21 1 369 chrX 25447906 25450049 -151524091 + SVA Other Other 47 1409 0 13665 89 5 22 chrX 25450170 25452130 -151522010 - L1P3 LINE L1 -4498 1963 3 6106 111 13 9 chrX 25452131 25453969 -151520171 + L1PA15 LINE L1 4315 6161 -4 470 304 41 23 chrX 25453996 25454262 -151519878 - L1MC4 LINE L1 -223 7819 7549 385 293 60 0 chrX 25454233 25454349 -151519791 - L1MC4a LINE L1 -401 7407 7285 * 1285 275 118 51 chrX 25454356 25455146 -151518994 - L1MEd LINE L1 -4762 1548 615 207 0 0 0 chrX 25455146 25455169 -151518971 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1285 275 118 51 chrX 25455169 25455585 -151518555 - L1MEd LINE L1 -5695 615 228 307 327 32 32 chrX 25455764 25455920 -151518220 + L2 LINE L2 3117 3272 0 204 339 18 9 chrX 25457165 25457274 -151516866 + L2 LINE L2 3127 3236 -36 710 222 93 10 chrX 25457278 25457472 -151516668 + MIR SINE MIR 45 254 -8 267 152 0 0 chrX 25457789 25457835 -151516305 + (CA)n Simple_repeat Simple_repeat 1 46 0 598 337 73 25 chrX 25458146 25458502 -151515638 - LTR16C LTR ERVL 0 491 119 532 264 0 16 chrX 25460069 25460198 -151513942 + MIR SINE MIR 14 140 -122 789 267 43 18 chrX 25460204 25460550 -151513590 - LTR16A LTR ERVL 0 450 66 187 243 131 65 chrX 25460647 25460754 -151513386 + MIR SINE MIR 149 262 0 1568 164 16 32 chrX 25461026 25461337 -151512803 - MLT1B LTR MaLR 0 390 85 500 251 44 22 chrX 25461461 25461644 -151512496 - LTR16A1 LTR ERVL -89 368 182 1421 213 117 66 chrX 25462600 25463098 -151511042 - LTR33A LTR ERVL 0 523 1 1398 212 19 35 chrX 25463168 25463484 -151510656 + MLT1A1 LTR MaLR 55 365 0 558 249 174 9 chrX 25464352 25464565 -151509575 - MIR SINE MIR -3 259 12 510 250 153 51 chrX 25465355 25465571 -151508569 + MLT1L LTR MaLR 6 243 -372 381 315 102 36 chrX 25465759 25466143 -151507997 + L2 LINE L2 2349 2757 -557 275 236 47 28 chrX 25466680 25466786 -151507354 - L1MC5 LINE L1 -48 7913 7806 629 270 91 25 chrX 25466811 25467215 -151506925 + LTR33 LTR ERVL 2 482 -39 5873 222 19 16 chrX 25467277 25468978 -151505162 + L1PA15-16 LINE L1 1901 3607 -3242 1296 165 0 5 chrX 25468981 25469205 -151504935 + L1PA15-16 LINE L1 4812 5034 -1815 25022 87 19 9 chrX 25469219 25473547 -151500593 - L1PA7 LINE L1 -2 6152 1784 4336 155 119 39 chrX 25473547 25474525 -151499615 + pTR5 LTR ERV1 741 2021 -417 389 238 10 0 chrX 25474526 25474627 -151499513 + LTR30 LTR ERV1 541 642 -80 2453 86 0 0 chrX 25474627 25474954 -151499186 + pTR5 LTR ERV1 66 392 -2046 2144 36 0 25 chrX 25474969 25475245 -151498895 + SVA Other Other 1 269 -1117 603 192 154 0 chrX 25475730 25475886 -151498254 - MER5A DNA MER1_type -6 183 4 244 280 38 19 chrX 25477212 25477369 -151496771 + (TCCA)n Simple_repeat Simple_repeat 1 160 0 408 285 24 24 chrX 25477399 25477564 -151496576 + (TCCA)n Simple_repeat Simple_repeat 3 167 0 227 380 108 24 chrX 25477900 25478187 -151495953 - L2 LINE L2 -449 2865 2555 1286 196 30 23 chrX 25478590 25478909 -151495231 - L1MD3 LINE L1 -10 7985 7609 1229 210 122 30 chrX 25479020 25479533 -151494607 - MLT1G LTR MaLR 0 590 7 658 260 70 29 chrX 25479805 25480047 -151494093 + MIR SINE MIR 6 257 -5 1615 183 97 30 chrX 25480858 25481229 -151492911 - MSTD LTR MaLR 0 396 1 201 129 0 0 chrX 25481255 25481286 -151492854 + (CA)n Simple_repeat Simple_repeat 2 32 0 522 264 68 36 chrX 25481823 25482073 -151492067 - MIR SINE MIR 0 262 5 826 305 123 32 chrX 25482073 25482765 -151491375 - L1ME4a LINE L1 -46 6075 5321 424 322 145 8 chrX 25483451 25483830 -151490310 + L2 LINE L2 1930 2360 -954 202 235 20 0 chrX 25484915 25484966 -151489174 - L2 LINE L2 -19 3294 3243 981 293 51 39 chrX 25484966 25485400 -151488740 - LTR16C LTR ERVL 0 491 53 271 148 93 0 chrX 25486068 25486122 -151488018 - LTR33 LTR ERVL -5 516 458 * 911 244 34 38 chrX 25486103 25486394 -151487746 - LTR33 LTR ERVL -182 339 50 2422 147 36 19 chrX 25486394 25486815 -151487325 + MSTA LTR MaLR 1 428 0 2194 127 0 0 chrX 25486860 25487183 -151486957 + MSTA-int LTR MaLR 31 353 -1298 2206 152 6 15 chrX 25487183 25487518 -151486622 + MER1B DNA MER1_type 1 332 -7 7001 182 45 6 chrX 25487518 25488754 -151485386 + MSTA-int LTR MaLR 353 1637 -14 2689 137 31 5 chrX 25488768 25489185 -151484955 + MSTA LTR MaLR 1 428 0 1809 189 122 12 chrX 25489829 25490246 -151483894 - MLT1C LTR MaLR -2 465 3 830 266 92 17 chrX 25490555 25490848 -151483292 - LTR16C LTR ERVL 0 491 177 300 311 59 7 chrX 25490976 25491111 -151483029 - MIR SINE MIR -72 190 49 893 257 55 55 chrX 25492111 25492496 -151481644 - L2 LINE L2 0 3313 2929 301 301 15 45 chrX 25492841 25492974 -151481166 + MIR SINE MIR 28 156 -106 1320 267 88 32 chrX 25493194 25493659 -151480481 - LTR16C LTR ERVL 0 491 1 183 42 0 0 chrX 25495071 25495095 -151479045 + (ATG)n Simple_repeat Simple_repeat 1 24 0 203 222 0 22 chrX 25496165 25496210 -151477930 + MER91 DNA MER1_type 95 138 -2 181 228 70 35 chrX 25496907 25496937 -151477203 + L2 LINE L2 3255 3282 -31 777 129 30 23 chrX 25496937 25497069 -151477071 - FLAM_C SINE Alu 0 133 1 181 228 70 35 chrX 25497069 25497095 -151477045 + L2 LINE L2 3282 3313 0 1095 267 77 18 chrX 25497720 25498121 -151476019 + L1ME3A LINE L1 5657 6081 -89 301 202 24 32 chrX 25499111 25499338 -151474802 + GA-rich Low_complexity Low_complexity 1 225 0 272 244 67 111 chrX 25499943 25500078 -151474062 - MLT1J1 LTR MaLR -57 389 261 254 302 21 21 chrX 25500080 25500176 -151473964 - MER5B DNA MER1_type -78 100 5 1984 170 41 0 chrX 25500295 25500636 -151473504 + MER47A DNA MER2_type 12 366 0 804 249 6 0 chrX 25500636 25500804 -151473336 - MLT1J2 LTR MaLR -274 176 8 2922 52 14 0 chrX 25501206 25501568 -151472572 + L1PA6 LINE L1 5784 6150 -4 297 237 51 34 chrX 25501713 25501831 -151472309 + MER94 DNA DNA 15 134 0 647 247 239 19 chrX 25502962 25503116 -151471024 + MLT1H LTR MaLR 95 214 -335 1460 169 141 44 chrX 25503116 25503477 -151470663 - MSTD LTR MaLR 0 396 1 647 247 239 19 chrX 25503477 25503695 -151470445 + MLT1H LTR MaLR 214 549 0 276 347 10 0 chrX 25503695 25503793 -151470347 - MIR SINE MIR -80 128 30 318 278 30 53 chrX 25504717 25504850 -151469290 + L2 LINE L2 3143 3272 0 843 254 130 56 chrX 25505481 25505859 -151468281 - LTR16C LTR ERVL -6 485 80 814 271 21 106 chrX 25506533 25507005 -151467135 - MLT1J1 LTR MaLR 0 446 15 249 267 213 40 chrX 25507384 25507534 -151466606 + MLT1H LTR MaLR 69 244 -311 414 193 144 20 chrX 25507617 25507780 -151466360 + MLT1H LTR MaLR 368 544 -5 194 342 77 43 chrX 25508001 25508118 -151466022 + L2 LINE L2 3152 3272 0 4821 127 14 9 chrX 25508340 25509121 -151465019 + L1MA6 LINE L1 5512 6296 -4 540 317 92 8 chrX 25509925 25510165 -151463975 + MIR SINE MIR 1 260 -2 37 62 0 0 chrX 25510269 25510334 -151463806 + AT_rich Low_complexity Low_complexity 1 65 0 832 262 35 4 chrX 25510382 25510611 -151463529 - MIR SINE MIR -15 247 12 1077 273 51 96 chrX 25511469 25512095 -151462045 - MLT1L LTR MaLR 0 615 18 207 273 182 0 chrX 25512109 25512197 -151461943 - MIR SINE MIR -118 144 41 244 98 0 39 chrX 25513060 25513111 -151461029 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 474 260 66 51 chrX 25513173 25513369 -151460771 + MLT1J LTR MaLR 3 201 -310 369 276 0 0 chrX 25513413 25513500 -151460640 + LTR16A LTR ERVL 364 450 0 252 319 78 42 chrX 25513593 25513759 -151460381 + MLT1L LTR MaLR 371 542 -73 574 257 36 61 chrX 25513886 25514166 -151459974 - L2 LINE L2 -10 3303 3031 893 280 68 34 chrX 25514418 25514800 -151459340 - L2 LINE L2 -621 2693 2299 1770 237 84 9 chrX 25514807 25515237 -151458903 + LTR16B LTR ERVL 1 462 -2 503 250 127 48 chrX 25515263 25515482 -151458658 - L2 LINE L2 -1050 2264 2009 1589 175 7 34 chrX 25515482 25515779 -151458361 + AluJo SINE Alu 1 289 -23 503 250 127 48 chrX 25515779 25515891 -151458249 - L2 LINE L2 -1305 2009 1907 261 355 73 8 chrX 25515903 25516162 -151457978 - L2 LINE L2 -1838 1476 1201 1764 194 93 11 chrX 25516637 25517002 -151457138 + MLT2D LTR ERVL 1 395 -19 285 139 0 0 chrX 25517041 25517084 -151457056 + MLT2D LTR ERVL 348 390 -7 1985 141 82 70 chrX 25517110 25517537 -151456603 - MSTB1 LTR MaLR 0 432 1 432 208 0 0 chrX 25517642 25517743 -151456397 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 242 320 221 0 chrX 25517764 25517886 -151456254 + MIR SINE MIR 6 154 -108 275 238 38 25 chrX 25517958 25518038 -151456102 + L3 LINE CR1 968 1048 -529 283 173 40 53 chrX 25518367 25518442 -151455698 - MLT1K LTR MaLR -158 430 357 23 33 0 0 chrX 25519617 25519647 -151454493 + AT_rich Low_complexity Low_complexity 1 30 0 1065 275 152 24 chrX 25520159 25520700 -151453440 - MLT1L LTR MaLR -5 610 1 209 351 46 23 chrX 25521563 25521694 -151452446 + L2 LINE L2 3137 3270 -2 602 155 9 0 chrX 25522201 25522317 -151451823 + CT-rich Low_complexity Low_complexity 2 118 0 1066 224 8 13 chrX 25522928 25523165 -151450975 - MIR SINE MIR -25 237 2 3873 141 6 6 chrX 25523313 25523943 -151450197 - L1MA5 LINE L1 -2 6298 5669 633 76 0 0 chrX 25523943 25524022 -151450118 + L1M2 LINE L1 5659 5737 -563 1148 255 23 7 chrX 25524044 25524346 -151449794 + LTR16C LTR ERVL 185 491 0 350 315 26 9 chrX 25524372 25524536 -151449604 - MIR SINE MIR -51 157 33 309 181 32 0 chrX 25524765 25524859 -151449281 + (TA)n Simple_repeat Simple_repeat 1 97 0 205 156 0 0 chrX 25524878 25524910 -151449230 + (TG)n Simple_repeat Simple_repeat 2 33 0 435 253 58 49 chrX 25525002 25525231 -151448909 + MLT1H LTR MaLR 44 304 -245 276 200 110 50 chrX 25525260 25525360 -151448780 + MLT1I LTR MaLR 281 386 -23 23 0 0 0 chrX 25525430 25525453 -151448687 + AT_rich Low_complexity Low_complexity 1 23 0 454 252 84 0 chrX 25525601 25525720 -151448420 - MER94 DNA DNA 0 134 6 234 375 130 3 chrX 25526001 25526302 -151447838 - L2 LINE L2 -511 2803 2465 757 280 44 30 chrX 25526547 25526875 -151447265 + LTR16C LTR ERVL 90 491 0 962 215 13 35 chrX 25526875 25527103 -151447037 + MIR SINE MIR 14 236 -26 553 252 92 11 chrX 25527251 25527496 -151446644 - LTR33A LTR ERVL -14 509 327 399 289 70 40 chrX 25527520 25527721 -151446419 - LTR50 LTR ERVL -569 226 20 417 306 96 0 chrX 25528482 25528639 -151445501 - MIR SINE MIR -71 191 20 11969 180 85 8 chrX 25529083 25533039 -151441101 + L1PBa LINE L1 6 4265 -2597 1208 243 47 137 chrX 25583042 25583930 -151390210 - L1PBb LINE L1 -4967 1236 371 6970 100 8 31 chrX 25584330 25585413 -151388727 + L1P LINE L1 864 1921 -4225 1625 345 26 17 chrX 25585514 25586277 -151387863 - HERV16 LTR ERVL -3429 1567 798 866 161 7 7 chrX 25586287 25586442 -151387698 - LTR32 LTR ERVL 0 471 317 535 210 0 0 chrX 25586494 25586594 -151387546 - LTR32 LTR ERVL -119 352 253 32 0 0 0 chrX 25587485 25587517 -151386623 + AT_rich Low_complexity Low_complexity 1 32 0 2433 61 0 19 chrX 25587543 25587853 -151386287 - AluY SINE Alu -7 304 1 299 330 44 16 chrX 25588633 25588815 -151385325 + MIR SINE MIR 32 218 -44 248 306 12 0 chrX 25589311 25589396 -151384744 - MER94 DNA DNA -10 124 39 512 186 0 93 chrX 25589804 25589933 -151384207 + L2 LINE L2 3197 3313 0 244 186 68 17 chrX 25589927 25589986 -151384154 - MIR SINE MIR -75 133 72 * 382 228 40 79 chrX 25590064 25590266 -151383874 - MIR SINE MIR -3 259 66 291 28 0 0 chrX 25590588 25590624 -151383516 + (TG)n Simple_repeat Simple_repeat 2 37 0 256 272 222 0 chrX 25591414 25591495 -151382645 - L2 LINE L2 -22 3250 3152 2099 153 6 8 chrX 25592069 25592434 -151381706 - L1MA3 LINE L1 0 6305 5942 255 182 0 0 chrX 25592614 25592658 -151381482 + LTR16C LTR ERVL 448 491 0 541 264 104 2 chrX 25593877 25594058 -151380082 + MIR SINE MIR 3 197 -65 195 279 29 0 chrX 25594169 25594237 -151379903 - L2 LINE L2 -208 3064 2995 2278 196 72 52 chrX 25594273 25594859 -151379281 + MLT1G LTR MaLR 13 576 -19 2820 71 3 0 chrX 25595177 25595531 -151378609 + THE1A LTR MaLR 1 355 0 6377 116 60 1 chrX 25595531 25596444 -151377696 + THE1A-int LTR MaLR 1 967 -613 350 232 49 63 chrX 25597385 25597527 -151376613 - MIR3 SINE MIR -34 174 35 2083 177 14 3 chrX 25598173 25598534 -151375606 + MLT1A1 LTR MaLR 1 365 0 250 259 62 37 chrX 25598542 25598623 -151375517 - MIR SINE MIR -167 95 13 258 371 57 28 chrX 25598768 25599016 -151375124 - L2 LINE L2 -337 2977 2723 1293 83 10 21 chrX 25599035 25599227 -151374913 + L1PA14 LINE L1 5963 6152 -9 21 0 0 0 chrX 25599239 25599260 -151374880 + AT_rich Low_complexity Low_complexity 1 21 0 323 232 27 54 chrX 25599361 25599410 -151374730 + L2 LINE L2 3172 3221 -92 2542 118 83 5 chrX 25599410 25599807 -151374333 + MSTA LTR MaLR 1 428 0 323 232 27 54 chrX 25599807 25599869 -151374271 + L2 LINE L2 3221 3280 -33 4593 97 6 13 chrX 25600079 25600710 -151373430 + THE1A-int LTR MaLR 954 1580 0 2623 104 3 3 chrX 25600710 25601065 -151373075 + THE1A LTR MaLR 1 355 0 358 257 46 9 chrX 25601158 25601267 -151372873 + MIR SINE MIR 35 147 -115 2199 126 39 39 chrX 25601677 25602041 -151372099 + THE1B LTR MaLR 1 364 0 406 257 52 22 chrX 25602105 25602241 -151371899 + MER5A DNA MER1_type 1 140 -49 242 235 0 0 chrX 25602369 25602420 -151371720 - LTR33 LTR ERVL 0 521 471 332 140 149 56 chrX 25603079 25603186 -151370954 + L2 LINE L2 3196 3312 -1 2031 112 0 18 chrX 25605226 25605512 -151368628 - AluSx SINE Alu -17 295 15 233 188 0 87 chrX 25605517 25605586 -151368554 - MER5A DNA MER1_type -118 71 9 860 198 0 22 chrX 25605628 25605810 -151368330 + MER5B DNA MER1_type 1 178 0 320 266 184 6 chrX 25606176 25606334 -151367806 - Charlie8 DNA MER1_type -1926 491 306 553 160 9 178 chrX 25606336 25606549 -151367591 - MER69A DNA AcHobo 0 177 1 426 241 0 27 chrX 25606760 25606872 -151367268 + MER5A DNA MER1_type 4 112 -77 223 250 0 0 chrX 25606970 25607022 -151367118 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 217 315 0 22 chrX 25607493 25607582 -151366558 + MIR SINE MIR 16 102 -160 302 308 9 0 chrX 25608640 25608747 -151365393 - MIR3 SINE MIR -32 176 69 231 146 42 42 chrX 25609048 25609096 -151365044 + MER34 LTR ERV1 1 48 -494 617 299 58 18 chrX 25610013 25610287 -151363853 + L3 LINE CR1 1281 1565 -12 323 162 162 27 chrX 25611100 25611174 -151362966 + MLT1C LTR MaLR 6 89 -378 1862 233 32 21 chrX 25611185 25611622 -151362518 - MER70B LTR ERVL -133 445 4 1684 194 65 19 chrX 25611627 25611994 -151362146 + MLT1C LTR MaLR 84 467 0 724 242 138 76 chrX 25612370 25612841 -151361299 + Charlie8 DNA MER1_type 43 542 -1875 464 252 42 125 chrX 25614708 25615059 -151359081 + MLT1I LTR MaLR 98 386 -23 1093 177 0 16 chrX 25615193 25615385 -151358755 + MER5A DNA MER1_type 1 189 0 909 187 12 6 chrX 25615571 25615742 -151358398 + MER5B DNA MER1_type 1 172 -6 255 262 0 0 chrX 25615976 25616037 -151358103 - L2 LINE L2 -2 3270 3210 250 287 57 57 chrX 25616312 25616434 -151357706 + MIR SINE MIR 92 213 -49 2050 132 39 0 chrX 25617794 25618074 -151356066 + AluSx SINE Alu 1 291 -21 1021 254 21 4 chrX 25618161 25618397 -151355743 + MIR SINE MIR 18 257 -5 282 258 106 23 chrX 25619456 25619588 -151354552 - MLT1J LTR MaLR -16 495 353 2233 188 114 2 chrX 25619621 25620158 -151353982 - L1ME2 LINE L1 -15 6149 5553 1484 237 20 12 chrX 25620164 25620510 -151353630 - MLT1J LTR MaLR -162 349 1 259 356 0 0 chrX 25620531 25620618 -151353522 + L2 LINE L2 3173 3259 -13 286 294 25 21 chrX 25622997 25623110 -151351030 - MIR SINE MIR -58 150 45 202 325 150 45 chrX 25623296 25623542 -151350598 - L2 LINE L2 -8 3264 2993 955 229 0 14 chrX 25623672 25623882 -151350258 + MER3 DNA MER1_type 1 207 -2 2355 93 86 67 chrX 25624421 25624462 -151349678 - MSTA LTR MaLR 0 428 389 2021 112 4 4 chrX 25624462 25624739 -151349401 + AluSc SINE Alu 1 277 -32 191 61 30 0 chrX 25624742 25624775 -151349365 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2355 93 86 67 chrX 25624775 25625149 -151348991 - MSTA LTR MaLR -40 388 1 1530 273 54 30 chrX 25625256 25626019 -151348121 + L2 LINE L2 2531 3311 -2 293 231 26 0 chrX 25626020 25626098 -151348042 - L1ME4a LINE L1 -80 6041 5962 2059 145 112 25 chrX 25626727 25627119 -151347021 + MSTA LTR MaLR 3 428 0 380 264 39 60 chrX 25627406 25627588 -151346552 + MLT1K LTR MaLR 383 560 -28 379 336 229 9 chrX 25627945 25628731 -151345409 - L2 LINE L2 -562 2752 1794 986 192 6 28 chrX 25628745 25628927 -151345213 + MER5A DNA MER1_type 12 189 0 1531 246 121 31 chrX 25629401 25629945 -151344195 - MLT1G1 LTR MaLR -2 593 1 218 133 0 22 chrX 25630728 25630773 -151343367 + (TTCTCC)n Simple_repeat Simple_repeat 2 45 0 196 333 90 0 chrX 25631482 25631593 -151342547 + L2 LINE L2 3142 3262 -10 3100 173 23 5 chrX 25631596 25632168 -151341972 + L1MB5 LINE L1 5591 6172 -2 255 237 204 0 chrX 25632236 25632329 -151341811 - MER81 DNA DNA -1 113 2 185 186 116 0 chrX 25632449 25632492 -151341648 - MIR SINE MIR 0 262 215 343 236 112 0 chrX 25632554 25632643 -151341497 - MER5A DNA MER1_type -87 102 4 * 858 210 16 27 chrX 25632643 25632827 -151341313 - MIR SINE MIR -43 219 38 236 189 75 0 chrX 25633365 25633418 -151340722 + MIR SINE MIR 108 164 -98 1825 174 0 29 chrX 25634868 25635178 -151338962 - AluJo SINE Alu -7 305 5 285 75 0 0 chrX 25635242 25635282 -151338858 + (CA)n Simple_repeat Simple_repeat 1 40 0 858 249 48 12 chrX 25636005 25636254 -151337886 + MIR SINE MIR 4 261 -1 618 297 25 127 chrX 25636357 25636815 -151337325 + L3 LINE CR1 159 545 -1032 846 252 133 42 chrX 25636815 25637220 -151336920 - MLT1J1 LTR MaLR 0 446 5 618 297 25 127 chrX 25637220 25637353 -151336787 + L3 LINE CR1 545 690 -887 367 302 12 41 chrX 25637814 25637986 -151336154 + L3 LINE CR1 674 840 -737 665 253 22 0 chrX 25638017 25638199 -151335941 - LTR33 LTR ERVL -4 517 332 257 315 15 46 chrX 25638370 25638500 -151335640 + L3 LINE CR1 1143 1268 -309 323 310 133 19 chrX 25638606 25638764 -151335376 + L2 LINE L2 3096 3271 -1 205 259 17 17 chrX 25638871 25638929 -151335211 + MIR SINE MIR 79 136 -126 275 282 168 0 chrX 25639054 25639203 -151334937 - LTR16C LTR ERVL 0 491 318 1579 122 79 33 chrX 25640042 25640409 -151333731 + MSTB LTR MaLR 1 425 -1 1970 195 21 21 chrX 25640558 25640932 -151333208 + MLT1A2 LTR MaLR 1 374 0 240 184 0 0 chrX 25641139 25641177 -151332963 + MIR SINE MIR 204 241 -21 454 344 63 60 chrX 25641316 25641601 -151332539 - L2 LINE L2 -2 3270 2985 571 216 9 0 chrX 25641629 25641740 -151332400 - MER5A DNA MER1_type -77 112 1 365 326 119 37 chrX 25641745 25642073 -151332067 - L2 LINE L2 -337 2977 2623 923 215 61 16 chrX 25642500 25642747 -151331393 + MIR SINE MIR 4 261 -1 604 246 10 68 chrX 25643198 25643405 -151330735 + LTR16A1 LTR ERVL 251 445 -12 343 158 34 57 chrX 25643913 25644090 -151330050 + (CAGAGA)n Simple_repeat Simple_repeat 2 174 0 * 359 227 12 12 chrX 25644060 25644232 -151329908 + GA-rich Low_complexity Low_complexity 1 172 0 192 213 0 0 chrX 25644267 25644328 -151329812 + GA-rich Low_complexity Low_complexity 2 62 0 826 232 109 25 chrX 25645842 25646328 -151327812 + MLT1G1 LTR MaLR 1 567 0 2010 124 0 4 chrX 25646367 25646633 -151327507 + AluSx SINE Alu 33 297 -15 245 252 14 28 chrX 25646789 25646932 -151327208 + CT-rich Low_complexity Low_complexity 3 143 0 434 215 11 28 chrX 25646964 25647141 -151326999 + CT-rich Low_complexity Low_complexity 4 177 0 531 195 0 53 chrX 25647154 25647344 -151326796 + CT-rich Low_complexity Low_complexity 1 180 0 373 241 103 42 chrX 25647849 25648017 -151326123 - MLT1G LTR MaLR -6 617 403 895 241 17 69 chrX 25648143 25648491 -151325649 - MLT1G LTR MaLR -260 330 1 615 291 37 0 chrX 25648726 25648915 -151325225 + Charlie8 DNA MER1_type 76 271 -2146 230 262 12 0 chrX 25649202 25649286 -151324854 + CT-rich Low_complexity Low_complexity 2 86 0 250 26 51 0 chrX 25649843 25649882 -151324258 + (TC)n Simple_repeat Simple_repeat 2 42 0 466 345 6 0 chrX 25650605 25650782 -151323358 + (TG)n Simple_repeat Simple_repeat 2 179 0 389 272 16 40 chrX 25651292 25651417 -151322723 + MIR SINE MIR 87 208 -54 220 217 0 0 chrX 25651889 25651935 -151322205 + MIR SINE MIR 150 195 -67 843 255 74 0 chrX 25652653 25652884 -151321256 + MIR SINE MIR 8 255 -7 6434 127 31 14 chrX 25653147 25654123 -151320017 - L1MA9 LINE L1 0 6312 5285 2482 83 0 0 chrX 25654123 25654425 -151319715 - AluSx SINE Alu -10 302 1 6434 127 31 14 chrX 25654425 25654846 -151319294 - L1MA9 LINE L1 -1027 5285 4873 214 297 0 27 chrX 25654853 25654927 -151319213 + L2 LINE L2 2914 2985 -287 802 279 14 70 chrX 25654945 25655358 -151318782 + LTR16B LTR ERVL 1 390 -74 255 280 67 150 chrX 25655413 25655713 -151318427 + L2 LINE L2 2998 3272 0 863 19 0 9 chrX 25657394 25657500 -151316640 + (CTATT)n Simple_repeat Simple_repeat 4 108 0 284 345 111 18 chrX 25658358 25658524 -151315616 - LTR67 LTR ERVL -267 290 109 1055 242 67 25 chrX 25658524 25658809 -151315331 - LTR16C LTR ERVL 0 491 195 303 49 0 0 chrX 25659503 25659544 -151314596 + (T)n Simple_repeat Simple_repeat 1 41 0 1307 255 18 12 chrX 25659700 25660037 -151314103 - LTR16A LTR ERVL -96 354 16 474 285 45 6 chrX 25660176 25660347 -151313793 - MIR SINE MIR -62 146 4 680 234 66 18 chrX 25660347 25660514 -151313626 - MER96 DNA MER1_type 0 175 1 642 294 41 32 chrX 25661915 25662259 -151311881 - MLT1I LTR MaLR 0 450 59 398 271 32 48 chrX 25662676 25662864 -151311276 + MLT1J2 LTR MaLR 266 450 0 206 69 0 0 chrX 25662866 25662895 -151311245 + L2 LINE L2 3243 3271 -1 814 128 88 20 chrX 25663875 25664023 -151310117 + MER6B DNA MER2_type 3 160 -50 1543 209 0 6 chrX 25664110 25664421 -151309719 + AluJb SINE Alu 1 309 -3 2112 123 0 0 chrX 25664586 25664886 -151309254 + AluSx SINE Alu 2 301 -11 787 302 38 38 chrX 25665431 25665799 -151308341 - LTR16A LTR ERVL -82 368 1 326 283 116 17 chrX 25665998 25666171 -151307969 - L2 LINE L2 -4 3309 3120 672 313 83 0 chrX 25666234 25666464 -151307676 - MIR SINE MIR -13 249 1 1581 187 79 97 chrX 25666688 25666752 -151307388 - LTR16C LTR ERVL -34 457 393 2192 96 3 0 chrX 25666752 25667043 -151307097 - AluSc SINE Alu -17 292 1 1581 187 79 97 chrX 25667043 25667433 -151306707 - LTR16C LTR ERVL -98 393 11 1397 168 9 8 chrX 25667499 25667946 -151306194 + MLT1D LTR MaLR 1 505 0 276 286 0 0 chrX 25668563 25668626 -151305514 + MIR SINE MIR 68 130 -78 535 285 26 36 chrX 25670428 25670621 -151303519 + MLT1H LTR MaLR 346 536 -13 560 282 92 23 chrX 25670908 25671082 -151303058 - MIR3 SINE MIR -3 205 20 391 286 8 8 chrX 25671116 25671235 -151302905 + MER117 DNA MER1_type 39 157 -40 229 261 23 80 chrX 25671837 25671925 -151302215 + L2 LINE L2 2995 3077 -195 1028 218 61 19 chrX 25671957 25672269 -151301871 - HsTC2 DNA Tc2 -3 1895 1571 220 395 19 6 chrX 25672657 25672819 -151301321 - L2 LINE L2 -527 2787 2624 1661 171 17 10 chrX 25672829 25673128 -151301012 + AluJo SINE Alu 1 301 -11 247 242 48 16 chrX 25673848 25673910 -151300230 - MLT1J LTR MaLR -211 300 237 689 327 46 31 chrX 25673925 25674313 -151299827 - LTR16C LTR ERVL -2 489 96 297 254 47 89 chrX 25674592 25674761 -151299379 - MIR3 SINE MIR -4 204 43 307 267 85 22 chrX 25675978 25676138 -151298002 + MIR SINE MIR 3 178 -63 472 296 34 28 chrX 25676523 25676699 -151297441 - MIR SINE MIR -79 183 7 353 218 56 84 chrX 25676826 25676968 -151297172 - MLT1H LTR MaLR -2 547 410 322 235 54 27 chrX 25677064 25677201 -151296939 - MLT1I LTR MaLR -267 142 79 269 252 147 28 chrX 25677363 25677504 -151296636 - MER2 DNA MER2_type -3 342 185 1287 131 19 0 chrX 25677504 25677710 -151296430 + MER2 DNA MER2_type 1 210 -135 345 310 205 0 chrX 25678248 25678419 -151295721 + MIR SINE MIR 38 243 -19 772 117 39 126 chrX 25678909 25679115 -151295025 - MER53 DNA DNA -1 188 1 1107 253 65 30 chrX 25679196 25679425 -151294715 - LTR16C LTR ERVL -39 452 204 1669 212 16 26 chrX 25679425 25679803 -151294337 - MLT1A2 LTR MaLR 0 374 1 1107 253 65 30 chrX 25679803 25679940 -151294200 - LTR16C LTR ERVL -287 204 73 262 165 33 22 chrX 25680237 25680328 -151293812 + GA-rich Low_complexity Low_complexity 2 93 0 1139 262 104 116 chrX 25680381 25680945 -151293195 - L2 LINE L2 -2 3311 2742 665 147 9 17 chrX 25680945 25681061 -151293079 + FLAM_A SINE Alu 10 124 -18 1139 262 104 116 chrX 25681061 25681686 -151292454 - L2 LINE L2 -571 2742 2001 3346 56 9 25 chrX 25681691 25681761 -151292379 + L1PA5 LINE L1 5717 5787 -367 2342 91 0 0 chrX 25681761 25682069 -151292071 + AluY SINE Alu 1 308 -3 3346 56 9 25 chrX 25682069 25682441 -151291699 + L1PA5 LINE L1 5787 6152 -2 378 91 0 0 chrX 25683121 25683176 -151290964 + (CA)n Simple_repeat Simple_repeat 1 55 0 198 103 0 0 chrX 25683177 25683206 -151290934 + (CACCAT)n Simple_repeat Simple_repeat 3 31 0 227 348 52 9 chrX 25683824 25683939 -151290201 + MIR SINE MIR 17 136 -72 1061 219 40 28 chrX 25683989 25684236 -151289904 + MIR SINE MIR 2 251 -11 317 169 34 17 chrX 25684276 25684335 -151289805 - MLT1C LTR MaLR 0 467 408 195 42 0 0 chrX 25684486 25684510 -151289630 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 262 326 78 85 chrX 25684534 25684708 -151289432 - L2 LINE L2 -50 3222 3049 1607 219 105 44 chrX 25684708 25685184 -151288956 + MLT1J LTR MaLR 5 509 -2 262 326 78 85 chrX 25685184 25685316 -151288824 - L2 LINE L2 -223 3049 2918 200 270 0 10 chrX 25685433 25685533 -151288607 + CT-rich Low_complexity Low_complexity 4 102 0 363 167 322 0 chrX 25685560 25685650 -151288490 - L2 LINE L2 -15 3298 3180 374 358 80 7 chrX 25685700 25685988 -151288152 + LTR16A LTR ERVL 1 309 -141 489 319 178 32 chrX 25685998 25686639 -151287501 - L2 LINE L2 -320 2952 2196 1753 173 13 0 chrX 25686741 25687048 -151287092 - AluJo SINE Alu -1 311 1 204 244 0 0 chrX 25687376 25687417 -151286723 + L2 LINE L2 3230 3270 -2 242 333 12 12 chrX 25687460 25687541 -151286599 - L3b LINE CR1 -246 1337 1257 189 286 0 0 chrX 25687775 25687824 -151286316 - L3b LINE CR1 -375 1208 1160 273 268 170 60 chrX 25689511 25689746 -151284394 + L2 LINE L2 2456 2716 -598 252 222 74 44 chrX 25689751 25689886 -151284254 + L2 LINE L2 2817 2955 -317 253 191 48 32 chrX 25689931 25689994 -151284146 + MLT1H LTR MaLR 469 532 -17 1196 330 65 14 chrX 25690022 25690541 -151283599 + MLT1K LTR MaLR 43 588 0 259 336 64 7 chrX 25691148 25691288 -151282852 + MARNA DNA Mariner 29 176 -410 271 220 66 110 chrX 25691880 25692062 -151282078 + MER3 DNA MER1_type 36 209 0 * 1108 168 0 39 chrX 25692062 25692109 -151282031 - MER3 DNA MER1_type -170 39 1 447 258 63 38 chrX 25692124 25692283 -151281857 + MIR SINE MIR 57 219 -43 1868 249 111 11 chrX 25692887 25693428 -151280712 + MLT1G1 LTR MaLR 1 595 0 2187 106 3 0 chrX 25693697 25693999 -151280141 + AluSx SINE Alu 3 305 -7 494 181 138 0 chrX 25695080 25695174 -151278966 - LTR16C LTR ERVL 0 491 385 1846 157 39 137 chrX 25695176 25695652 -151278488 - MLT2D LTR ERVL -2 513 1 1388 294 23 13 chrX 25695652 25696036 -151278104 - LTR16C LTR ERVL -102 389 2 592 270 70 97 chrX 25696340 25696837 -151277303 + MLT1J LTR MaLR 25 508 -3 327 242 174 8 chrX 25696879 25697011 -151277129 + L2 LINE L2 3160 3313 0 566 255 87 3 chrX 25697135 25697317 -151276823 + MIR SINE MIR 2 203 -59 601 330 29 43 chrX 25697589 25698032 -151276108 + L1ME2 LINE L1 5448 5884 -280 224 204 0 74 chrX 25698351 25698405 -151275735 + L2 LINE L2 3263 3312 -1 1759 181 143 10 chrX 25698525 25698939 -151275201 + Charlie4a DNA MER1_type 39 507 -1 248 279 15 0 chrX 25699118 25699186 -151274954 + A-rich Low_complexity Low_complexity 2 70 0 1633 255 59 25 chrX 25699616 25700087 -151274053 - LTR16C LTR ERVL -3 488 2 410 314 63 11 chrX 25700187 25700362 -151273778 + Charlie8 DNA MER1_type 1 184 -2233 1099 228 16 20 chrX 25701439 25701689 -151272451 + MIR SINE MIR 14 262 0 757 298 18 6 chrX 25702957 25703200 -151270940 + MIR SINE MIR 17 262 0 231 170 0 0 chrX 25703349 25703396 -151270744 + (CA)n Simple_repeat Simple_repeat 1 47 0 310 215 15 0 chrX 25704204 25704269 -151269871 - L2 LINE L2 -1 3312 3247 779 278 71 40 chrX 25704343 25704793 -151269347 + LTR16B LTR ERVL 1 464 0 203 240 80 27 chrX 25705083 25705158 -151268982 - MIR SINE MIR -1 261 183 317 274 0 0 chrX 25705679 25705760 -151268380 + MIR SINE MIR 73 153 -55 284 156 167 0 chrX 25705804 25705874 -151268266 + MER5A DNA MER1_type 4 87 -102 1039 286 94 51 chrX 25706699 25707168 -151266972 + MLT1J LTR MaLR 9 497 -14 917 295 21 0 chrX 25707202 25707443 -151266697 - LTR16A LTR ERVL -6 444 199 201 239 134 0 chrX 25707443 25707510 -151266630 + MIR SINE MIR 112 187 -75 289 299 0 0 chrX 25707820 25707897 -151266243 + L2 LINE L2 3194 3270 -2 1737 98 0 0 chrX 25707982 25708218 -151265922 - AluSg/x SINE Alu -5 305 70 253 323 11 21 chrX 25708240 25708333 -151265807 + MIR SINE MIR 100 191 -71 1072 217 44 9 chrX 25708985 25709211 -151264929 + MIR SINE MIR 10 243 -19 393 230 42 164 chrX 25709743 25709956 -151264184 - MLT1K LTR MaLR -196 392 206 349 321 30 15 chrX 25713036 25713167 -151260973 + MIR SINE MIR 32 164 -98 380 189 159 0 chrX 25713472 25713589 -151260551 + MIR SINE MIR 45 185 -77 303 198 86 12 chrX 25713768 25713849 -151260291 - MLT1K LTR MaLR 0 588 502 1419 228 37 26 chrX 25713925 25714306 -151259834 + LTR16C LTR ERVL 107 491 0 374 238 0 0 chrX 25714314 25714394 -151259746 - MLT1K LTR MaLR -110 478 399 467 301 9 0 chrX 25714904 25715017 -151259123 - MER81 DNA DNA 0 114 1 559 274 44 69 chrX 25715155 25715409 -151258731 + L1ME3 LINE L1 5583 5827 -294 1513 239 88 37 chrX 25715409 25715874 -151258266 - LTR16C LTR ERVL 0 491 3 559 274 44 69 chrX 25715874 25715980 -151258160 + L1ME3 LINE L1 5827 5934 -187 843 243 156 0 chrX 25716222 25716510 -151257630 - MER46C DNA MER2_type -1 337 5 333 216 27 14 chrX 25716734 25716808 -151257332 - MER5A DNA MER1_type -106 83 9 687 173 15 63 chrX 25717224 25717413 -151256727 + L1ME3 LINE L1 5988 6170 0 699 276 145 13 chrX 25717803 25718114 -151256026 + MLT1J LTR MaLR 149 500 -11 1138 231 151 41 chrX 25718283 25718768 -151255372 + MLT1H LTR MaLR 12 549 0 482 279 138 41 chrX 25719922 25720291 -151253849 + MLT1I LTR MaLR 5 409 0 2127 113 6 53 chrX 25720428 25720746 -151253394 + AluSx SINE Alu 1 303 -9 598 201 37 37 chrX 25722570 25722759 -151251381 + MER53 DNA DNA 1 189 0 801 230 85 5 chrX 25723933 25724133 -151250007 - LTR16C LTR ERVL 0 491 276 887 161 175 84 chrX 25724134 25724348 -151249792 - MER5C DNA MER1_type -1 323 75 1808 124 26 4 chrX 25724348 25724613 -151249527 - AluSx SINE Alu -9 303 33 887 161 175 84 chrX 25724613 25724684 -151249456 - MER5C DNA MER1_type -249 75 12 229 235 224 0 chrX 25724684 25724769 -151249371 - LTR16C LTR ERVL -213 278 175 189 229 0 0 chrX 25725302 25725337 -151248803 - MIR SINE MIR -137 71 37 350 263 9 61 chrX 25725349 25725463 -151248677 + MIR SINE MIR 105 212 -50 824 245 19 77 chrX 25725593 25725886 -151248254 + L1MC4 LINE L1 7640 7949 -93 351 0 0 0 chrX 25725886 25725925 -151248215 + (CA)n Simple_repeat Simple_repeat 2 40 0 824 245 19 77 chrX 25725925 25725965 -151248175 + L1MC4 LINE L1 7949 7990 -52 1804 151 27 3 chrX 25725965 25726263 -151247877 + AluJb SINE Alu 1 305 -7 824 245 19 77 chrX 25726263 25726356 -151247784 + L1MC4 LINE L1 7990 8042 0 3688 102 28 4 chrX 25726530 25727070 -151247070 - L1PB3 LINE L1 -2 6152 5600 968 283 111 11 chrX 25727638 25727988 -151246152 + MLT1L LTR MaLR 230 614 -1 307 294 37 18 chrX 25728212 25728321 -151245819 + MER5A DNA MER1_type 7 117 -72 370 308 57 64 chrX 25729074 25729529 -151244611 + LTR67 LTR ERVL 97 548 -9 1162 244 181 26 chrX 25729605 25730064 -151244076 - L1ME3A LINE L1 -111 6059 5530 259 263 298 0 chrX 25730544 25730658 -151243482 - MER96 DNA MER1_type? 0 175 28 397 287 140 6 chrX 25730671 25730835 -151243305 + MIR SINE MIR 75 260 -2 245 269 0 0 chrX 25731471 25731523 -151242617 + polypyrimidine Low_complexity Low_complexity 1 52 0 1023 193 44 62 chrX 25731582 25731970 -151242170 - L1MC5 LINE L1 -30 7931 7551 467 230 161 62 chrX 25732806 25732871 -151241269 + MER5A DNA MER1_type 7 64 -125 1556 167 21 28 chrX 25732871 25733158 -151240982 + AluJo SINE Alu 21 305 -7 467 230 161 62 chrX 25733158 25733253 -151240887 + MER5A DNA MER1_type 64 183 -6 824 290 41 8 chrX 25735124 25735222 -151238918 + MIR SINE MIR 8 101 -161 1110 273 91 26 chrX 25735222 25735683 -151238457 + LTR16C LTR ERVL 1 491 0 824 290 41 8 chrX 25735683 25735829 -151238311 + MIR SINE MIR 101 260 -2 219 69 0 0 chrX 25736431 25736460 -151237680 + (T)n Simple_repeat Simple_repeat 1 29 0 298 233 0 0 chrX 25736584 25736657 -151237483 - MLT1F LTR MaLR -16 579 507 372 235 85 40 chrX 25736702 25736926 -151237214 - MLT1F LTR MaLR -169 373 112 1485 223 50 55 chrX 25737302 25737778 -151236362 - MLT1K LTR MaLR -2 474 1 688 179 22 8 chrX 25738591 25738725 -151235415 - LTR16A LTR ERVL -172 278 143 692 249 6 12 chrX 25740034 25740199 -151233941 + MER5B DNA MER1_type 4 167 -11 230 235 7 140 chrX 25740201 25740337 -151233803 - MLT1H LTR MaLR 0 549 432 312 250 57 48 chrX 25740494 25740620 -151233520 - MLT1H LTR MaLR -264 162 51 421 260 58 45 chrX 25740757 25740911 -151233229 + MIR SINE MIR 50 205 -57 708 261 82 33 chrX 25741306 25741636 -151232504 + LTR16A LTR ERVL 105 450 0 2409 98 0 13 chrX 25744964 25745281 -151228859 - AluSq SINE Alu 0 313 1 345 246 82 49 chrX 25745424 25745546 -151228594 + MIR SINE MIR 84 209 -53 180 152 0 0 chrX 25745818 25745851 -151228289 + (TG)n Simple_repeat Simple_repeat 1 33 0 304 185 62 0 chrX 25747097 25747162 -151226978 + MIR SINE MIR 30 98 -110 600 267 104 9 chrX 25747279 25747500 -151226640 + MLT1H LTR MaLR 4 245 -304 223 288 0 61 chrX 25747736 25747802 -151226338 - L2 LINE L2 0 3272 3211 214 244 0 0 chrX 25748054 25748099 -151226041 + GA-rich Low_complexity Low_complexity 3 47 0 256 198 0 74 chrX 25748117 25748198 -151225942 - HsTC2 DNA Tc2 -1819 79 5 2247 124 0 0 chrX 25748282 25748581 -151225559 + AluSx SINE Alu 1 299 -13 2618 161 42 46 chrX 25750776 25750854 -151223286 - MLT2B1 LTR ERVL -2 518 441 195 42 0 0 chrX 25750854 25750878 -151223262 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 2618 161 42 46 chrX 25750878 25751319 -151222821 - MLT2B1 LTR ERVL -79 441 1 331 235 0 37 chrX 25751729 25751810 -151222330 - L2 LINE L2 -1 3312 3235 237 254 159 29 chrX 25751827 25751965 -151222175 - LTR67 LTR ERVL -19 538 383 271 318 91 98 chrX 25752221 25752485 -151221655 - L2 LINE L2 -71 3201 2940 720 228 138 0 chrX 25752671 25752860 -151221280 - MIR SINE MIR 0 262 48 1651 217 33 8 chrX 25752943 25753335 -151220805 + LTR16C LTR ERVL 54 455 -36 2317 146 0 32 chrX 25753858 25754235 -151219905 + MLT1A1 LTR MaLR 1 365 0 1809 242 78 43 chrX 25754236 25754811 -151219329 + MLT1G1 LTR MaLR 1 595 0 439 232 64 16 chrX 25755667 25755792 -151218348 + MIR SINE MIR 68 198 -64 1242 263 140 18 chrX 25756169 25756680 -151217460 + L2 LINE L2 2741 3313 0 276 219 0 0 chrX 25756805 25756887 -151217253 + (CA)n Simple_repeat Simple_repeat 1 82 0 180 228 0 0 chrX 25756958 25757015 -151217125 + (CA)n Simple_repeat Simple_repeat 2 58 0 192 266 0 0 chrX 25757064 25757173 -151216967 + (CA)n Simple_repeat Simple_repeat 2 110 0 2315 107 7 0 chrX 25757216 25757526 -151216614 - AluSx SINE Alu 0 312 1 222 331 97 55 chrX 25757543 25757688 -151216452 + L2 LINE L2 2890 3040 -232 1177 211 65 12 chrX 25757689 25757936 -151216204 + MIR SINE MIR 2 261 -1 373 347 8 0 chrX 25758168 25758289 -151215851 + MIR3 SINE MIR 87 208 0 429 301 102 11 chrX 25758400 25758576 -151215564 - MIR3 SINE MIR -3 205 14 618 313 62 0 chrX 25758733 25758928 -151215212 - MIR SINE MIR -13 249 43 307 260 0 40 chrX 25759171 25759271 -151214869 - MLT1H LTR MaLR 0 549 454 506 278 78 31 chrX 25759365 25759620 -151214520 - MLT1H LTR MaLR -270 279 13 315 343 98 0 chrX 25760430 25760573 -151213567 + MIR SINE MIR 105 261 -1 288 161 0 0 chrX 25760710 25760772 -151213368 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 266 298 57 24 chrX 25760774 25760898 -151213242 - L2 LINE L2 0 3313 3186 436 304 58 38 chrX 25760920 25761236 -151212904 - L3 LINE CR1 -9 1568 1173 2055 149 13 43 chrX 25761500 25761875 -151212265 + THE1B LTR MaLR 1 364 0 1088 258 99 21 chrX 25762076 25762499 -151211641 + LTR16C LTR ERVL 6 461 -30 257 68 14 68 chrX 25762632 25762705 -151211435 + (TC)n Simple_repeat Simple_repeat 1 69 0 300 179 36 32 chrX 25762710 25762967 -151211173 + CT-rich Low_complexity Low_complexity 1 258 0 248 143 40 46 chrX 25763015 25763190 -151210950 + CT-rich Low_complexity Low_complexity 1 174 0 23 0 0 0 chrX 25763714 25763737 -151210403 + AT_rich Low_complexity Low_complexity 1 23 0 183 206 164 14 chrX 25764055 25764128 -151210012 - MIR SINE MIR -10 252 169 659 251 111 5 chrX 25764132 25764339 -151209801 - MIR SINE MIR -6 256 28 604 262 75 26 chrX 25764410 25764677 -151209463 - LTR16A1 LTR ERVL -17 440 161 414 0 0 0 chrX 25765202 25765248 -151208892 + (CA)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chrX 25765271 25765301 -151208839 + (TC)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chrX 25765301 25765326 -151208814 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 25765705 25765735 -151208405 + AT_rich Low_complexity Low_complexity 1 30 0 1833 248 31 31 chrX 25765881 25766454 -151207686 + L1ME3A LINE L1 5589 6161 -9 30564 101 21 62 chrX 25768993 25770961 -151203179 + L1PA6 LINE L1 13 2059 -4095 2385 90 0 3 chrX 25770961 25771261 -151202879 + AluY SINE Alu 1 299 -12 30564 101 21 62 chrX 25771261 25775704 -151198436 + L1PA6 LINE L1 2059 6154 0 7082 59 5 1 chrX 25775707 25776842 -151197298 + L1PA7 LINE L1 5002 6139 -15 264 200 0 0 chrX 25776842 25776902 -151197238 + (TA)n Simple_repeat Simple_repeat 1 60 0 287 255 28 47 chrX 25776960 25777066 -151197074 - MIR3 SINE MIR -7 201 98 194 240 195 65 chrX 25777054 25777208 -151196932 - MIR SINE MIR -3 259 86 * 731 231 26 163 chrX 25777593 25778122 -151196018 - LTR16A1 LTR ERVL 0 457 1 489 271 71 29 chrX 25778692 25778832 -151195308 - L2 LINE L2 -5 3267 3122 1632 233 93 13 chrX 25778947 25779397 -151194743 + MLT1J LTR MaLR 19 504 -7 514 333 90 24 chrX 25779570 25779825 -151194315 + LTR16A LTR ERVL 25 296 -154 772 278 22 45 chrX 25779952 25780265 -151193875 + LTR16A LTR ERVL 145 450 0 342 358 0 0 chrX 25780509 25780640 -151193500 + MIR SINE MIR 24 153 -72 1263 188 18 5 chrX 25780672 25780890 -151193250 + MER58A DNA MER1_type 1 221 -3 1640 266 58 25 chrX 25780951 25781067 -151193073 - L2 LINE L2 -1 3312 3201 1732 184 97 27 chrX 25781067 25781437 -151192703 + MSTD LTR MaLR 1 396 0 1640 266 58 25 chrX 25781437 25782084 -151192056 - L2 LINE L2 -112 3201 2512 285 240 53 0 chrX 25782386 25782461 -151191679 + L2 LINE L2 2671 2749 -565 975 249 170 25 chrX 25782473 25782915 -151191225 + MLT1H1 LTR MaLR 50 555 0 268 385 73 4 chrX 25784508 25784742 -151189398 + L2 LINE L2 2811 3060 -212 384 232 11 0 chrX 25784822 25784917 -151189223 - LTR16C LTR ERVL -8 483 388 191 437 63 7 chrX 25785178 25785320 -151188820 + L2 LINE L2 3122 3271 -1 201 258 15 15 chrX 25785733 25785799 -151188341 + L2 LINE L2 2821 2886 -427 1157 234 75 51 chrX 25785799 25786252 -151187888 + MLT1C LTR MaLR 1 372 -2 1444 243 25 54 chrX 25786252 25786697 -151187443 + L2 LINE L2 2882 3313 0 514 306 104 10 chrX 25786755 25786948 -151187192 - MIR SINE MIR -48 214 4 369 0 0 0 chrX 25787079 25787120 -151187020 + (TG)n Simple_repeat Simple_repeat 1 41 0 294 73 0 0 chrX 25787122 25787163 -151186977 + (GA)n Simple_repeat Simple_repeat 2 42 0 779 264 58 39 chrX 25787353 25787735 -151186405 + LTR16C LTR ERVL 64 452 -39 183 310 92 23 chrX 25787751 25787838 -151186302 - L2 LINE L2 -26 3246 3154 201 261 31 31 chrX 25788091 25788156 -151185984 - L2 LINE L2 -36 3236 3172 478 418 45 16 chrX 25789563 25789872 -151184268 - L2 LINE L2 0 3272 2955 1712 174 37 6 chrX 25789912 25790233 -151183907 - MSTB LTR MaLR 0 426 96 1788 171 33 6 chrX 25790335 25790669 -151183471 - MSTB LTR MaLR -83 343 1 1511 229 95 36 chrX 25790764 25791345 -151182795 + L1MC5 LINE L1 7312 7926 -35 279 319 144 6 chrX 25791351 25791511 -151182629 - L2 LINE L2 -342 2972 2791 1868 206 62 9 chrX 25791787 25792223 -151181917 - MLT1C LTR MaLR -8 459 1 1575 203 60 34 chrX 25793374 25793788 -151180352 + MLT1C LTR MaLR 8 432 -35 343 272 19 19 chrX 25794170 25794273 -151179867 - L2 LINE L2 -1 3271 3169 1747 166 58 76 chrX 25794569 25794966 -151179174 + MLT1B LTR MaLR 1 390 0 245 301 122 32 chrX 25795135 25795291 -151178849 + MIR SINE MIR 21 190 -72 2749 110 0 0 chrX 25795340 25795704 -151178436 - THE1B LTR MaLR 0 364 1 670 249 49 101 chrX 25795706 25795917 -151178223 - LTR16C LTR ERVL -14 477 286 1942 158 0 0 chrX 25795917 25796232 -151177908 + AluJo SINE Alu 1 315 0 670 249 49 101 chrX 25796232 25796345 -151177795 - LTR16C LTR ERVL -205 286 169 1580 176 133 18 chrX 25796349 25796746 -151177394 - MLT1D LTR MaLR 0 505 63 2231 157 41 10 chrX 25796836 25797249 -151176891 + MSTB1 LTR MaLR 7 432 0 302 252 144 50 chrX 25797467 25797645 -151176495 - MIR SINE MIR -59 203 18 1380 217 110 10 chrX 25798190 25798573 -151175567 + LTR16C LTR ERVL 71 491 0 313 206 33 11 chrX 25798869 25798961 -151175179 + L1MC5 LINE L1 7832 7925 -36 465 286 110 9 chrX 25799032 25799387 -151174753 + LTR16C LTR ERVL 84 491 0 1700 164 17 24 chrX 25799521 25799814 -151174326 + AluJb SINE Alu 1 291 -21 403 297 55 16 chrX 25800576 25800704 -151173436 + MLT1G1 LTR MaLR 139 271 -284 1640 131 25 0 chrX 25800727 25801010 -151173130 + L1MA8 LINE L1 5988 6277 -14 3050 135 4 8 chrX 25801010 25801477 -151172663 + L1PB4 LINE L1 5683 6154 -2 926 176 0 16 chrX 25801503 25801690 -151172450 - L1MA3 LINE L1 0 6305 6122 989 198 118 4 chrX 25801752 25801989 -151172151 + MLT1G1 LTR MaLR 332 595 0 642 286 145 7 chrX 25802045 25802328 -151171812 + MLT1J2 LTR MaLR 1 322 -128 298 194 16 0 chrX 25802638 25802700 -151171440 + MLT1J2 LTR MaLR 388 450 0 251 356 45 23 chrX 25802773 25802950 -151171190 + L2 LINE L2 3130 3310 -3 479 284 105 0 chrX 25802954 25803177 -151170963 - MIR SINE MIR -10 252 1 207 292 0 0 chrX 25803611 25803659 -151170481 + (TG)n Simple_repeat Simple_repeat 1 48 0 401 314 75 64 chrX 25806077 25806517 -151167623 + LTR16B LTR ERVL 1 445 -5 377 282 57 32 chrX 25806915 25807039 -151167101 + L2 LINE L2 3142 3268 -4 483 261 97 36 chrX 25807501 25807571 -151166569 - MIR SINE MIR -42 220 156 2453 66 10 3 chrX 25807571 25807874 -151166266 - AluY SINE Alu -6 305 1 483 261 97 36 chrX 25807874 25807998 -151166142 - MIR SINE MIR -106 156 14 350 260 23 11 chrX 25808376 25808518 -151165622 - MIR SINE MIR -72 190 8 986 214 5 0 chrX 25809362 25809549 -151164591 + AluJo SINE Alu 123 310 -2 383 248 8 33 chrX 25809581 25809702 -151164438 - MER45C DNA AcHobo -102 851 734 692 189 5 13 chrX 25809797 25809979 -151164161 - MER45C DNA AcHobo -686 267 55 379 284 88 34 chrX 25809997 25810201 -151163939 + LTR16C LTR ERVL 115 329 -162 2000 184 51 51 chrX 25810348 25810815 -151163325 - MLT1C LTR MaLR 0 467 1 332 213 13 0 chrX 25810928 25811003 -151163137 - MER5A DNA MER1_type -83 106 31 239 169 12 133 chrX 25811666 25811749 -151162391 - MLT1H LTR MaLR 0 549 477 599 229 46 67 chrX 25811807 25812047 -151162093 - MLT1H LTR MaLR -248 301 67 693 241 107 23 chrX 25812994 25813210 -151160930 + MIR SINE MIR 17 250 -12 1085 226 15 11 chrX 25813222 25813488 -151160652 - MER46C DNA MER2_type -2 336 70 399 119 0 0 chrX 25814151 25814218 -151159922 + (TG)n Simple_repeat Simple_repeat 2 68 0 531 264 38 54 chrX 25814713 25814805 -151159335 - LTR16C LTR ERVL -3 466 374 2477 152 59 2 chrX 25814805 25815245 -151158895 - MLT1C LTR MaLR -2 465 1 531 264 38 54 chrX 25815245 25815416 -151158724 - LTR16C LTR ERVL -95 374 227 2744 88 54 10 chrX 25815482 25815890 -151158250 + MSTA LTR MaLR 3 428 0 601 312 52 13 chrX 25817025 25817256 -151156884 + MIR SINE MIR 23 262 0 740 211 177 93 chrX 25817274 25817766 -151156374 - MLT1H LTR MaLR -3 546 14 400 299 41 0 chrX 25818412 25818509 -151155631 - L2 LINE L2 -6 3307 3207 305 200 17 0 chrX 25818764 25818824 -151155316 - MIR SINE MIR -38 224 164 893 261 146 50 chrX 25818825 25819236 -151154904 - MLT1H LTR MaLR 0 549 80 2026 136 0 3 chrX 25819236 25819545 -151154595 - AluJb SINE Alu -4 308 1 893 261 146 50 chrX 25819545 25819634 -151154506 - MLT1H LTR MaLR -469 80 1 544 250 18 0 chrX 25819636 25819782 -151154358 - MIR SINE MIR -63 145 17 209 200 25 0 chrX 25820780 25820820 -151153320 + MIR SINE MIR 2 42 -220 376 265 29 20 chrX 25821114 25821216 -151152924 - MLT1K LTR MaLR -343 245 143 620 176 164 24 chrX 25821398 25821563 -151152577 - MER5A DNA MER1_type -1 188 1 2497 68 0 0 chrX 25822400 25822709 -151151431 - AluSc SINE Alu 0 309 1 1170 185 47 126 chrX 25822849 25823312 -151150828 - MLT2D LTR ERVL -10 510 1 296 274 71 12 chrX 25823337 25823421 -151150719 + L2 LINE L2 3225 3313 0 266 210 74 12 chrX 25824159 25824240 -151149900 + MIR SINE MIR 113 198 -64 220 219 0 0 chrX 25824251 25824292 -151149848 - MIR SINE MIR -6 256 216 193 231 31 46 chrX 25824770 25824835 -151149305 + MIR SINE MIR 188 251 -11 780 253 43 17 chrX 25824964 25825197 -151148943 - L2 LINE L2 -7 3306 3068 423 306 61 7 chrX 25825195 25825342 -151148798 + MIR SINE MIR 91 245 -17 * 766 244 122 48 chrX 25825858 25826222 -151147918 - LTR33 LTR ERVL -1 520 110 2225 112 0 0 chrX 25826222 25826534 -151147606 + AluSx SINE Alu 1 312 0 766 244 122 48 chrX 25826534 25826653 -151147487 - LTR33 LTR ERVL -411 110 1 956 172 58 6 chrX 25826711 25826885 -151147255 - MER5A DNA MER1_type 0 189 7 826 173 0 8 chrX 25826886 25827019 -151147121 - FLAM_A SINE Alu -1 132 1 203 42 0 0 chrX 25827021 25827045 -151147095 - MER5A DNA MER1_type -165 24 1 265 156 46 28 chrX 25828733 25828842 -151145298 + (CA)n Simple_repeat Simple_repeat 1 111 0 337 91 73 0 chrX 25832450 25832505 -151141635 + MLT1J1 LTR MaLR 1 59 -387 319 145 29 0 chrX 25832628 25832697 -151141443 + CT-rich Low_complexity Low_complexity 3 73 0 602 238 81 57 chrX 25832711 25832832 -151141308 + MLT1J1 LTR MaLR 177 294 -152 996 281 66 23 chrX 25832832 25833270 -151140870 - LTR16A1 LTR ERVL 0 457 1 602 238 81 57 chrX 25833270 25833396 -151140744 + MLT1J1 LTR MaLR 294 430 -16 414 259 0 0 chrX 25833431 25833516 -151140624 - MER58B DNA MER1_type 0 341 257 407 309 24 18 chrX 25834102 25834267 -151139873 + HERVL LTR ERVL 5160 5325 -329 481 325 39 31 chrX 25834401 25834687 -151139453 + LTR16A LTR ERVL 57 344 -106 4620 173 37 11 chrX 25834713 25836220 -151137920 + L1MB8 LINE L1 4620 6166 -12 236 214 14 86 chrX 25836220 25836290 -151137850 + LTR16A LTR ERVL 379 443 -7 280 185 93 130 chrX 25837067 25837175 -151136965 - L2 LINE L2 -14 3258 3155 753 213 91 30 chrX 25837391 25837588 -151136552 + MER3 DNA MER1_type 1 209 0 736 306 62 22 chrX 25837826 25838150 -151135990 - MER102b DNA MER1_type 0 341 5 280 225 81 90 chrX 25838246 25838357 -151135783 + L2 LINE L2 3163 3272 0 194 298 33 91 chrX 25839270 25839391 -151134749 - MIR3 SINE MIR -11 197 84 468 130 210 111 chrX 25840418 25840463 -151133677 - MER5A DNA MER1_type -3 186 147 2290 90 0 0 chrX 25840463 25840762 -151133378 + AluSx SINE Alu 1 299 -13 468 130 210 111 chrX 25840762 25840878 -151133262 - MER5A DNA MER1_type -42 147 9 422 182 20 0 chrX 25841058 25841157 -151132983 + GA-rich Low_complexity Low_complexity 4 104 0 617 163 192 6 chrX 25841866 25842014 -151132126 + MER5A DNA MER1_type 4 183 -6 224 235 49 131 chrX 25842926 25842995 -151131145 + L3 LINE CR1 615 688 -889 2168 109 3 6 chrX 25842995 25843308 -151130832 + AluSx SINE Alu 1 312 0 224 235 49 131 chrX 25843308 25843421 -151130719 + L3 LINE CR1 688 782 -795 809 307 80 23 chrX 25843604 25843956 -151130184 + L3 LINE CR1 797 1168 -409 275 279 153 8 chrX 25844358 25844541 -151129599 - MLT1J LTR MaLR -174 392 205 613 304 60 54 chrX 25844600 25845084 -151129056 - L2 LINE L2 -846 2468 1982 1886 178 27 104 chrX 25845495 25846050 -151128090 + L1ME3 LINE L1 5651 6162 0 2202 99 3 0 chrX 25846408 25846712 -151127428 - AluSx SINE Alu -6 306 2 364 306 39 34 chrX 25846862 25847068 -151127072 + L3 LINE CR1 1150 1356 -221 278 339 8 25 chrX 25847072 25847190 -151126950 - L3 LINE CR1 -471 1106 991 218 260 60 30 chrX 25847291 25847391 -151126749 - L3 LINE CR1 -621 956 854 248 304 91 60 chrX 25847615 25848004 -151126136 + LTR33 LTR ERVL 4 379 -142 2251 123 42 25 chrX 25848004 25848362 -151125778 - THE1B LTR MaLR 0 364 1 12143 85 11 0 chrX 25848362 25849925 -151124215 - THE1B-int LTR MaLR 0 1580 1 2241 154 31 14 chrX 25849925 25850283 -151123857 - THE1B LTR MaLR 0 364 1 248 304 91 60 chrX 25850283 25850359 -151123781 + LTR33 LTR ERVL 378 513 -8 319 296 45 45 chrX 25850752 25850915 -151123225 - MIR3 SINE MIR -4 204 43 394 77 62 15 chrX 25851139 25851204 -151122936 - MSTC LTR MaLR -360 68 1 7729 181 99 33 chrX 25851217 25852839 -151121301 - MLT1A1-int LTR MaLR -5 1730 2 1490 176 33 109 chrX 25852840 25853233 -151120907 - MLT1A1 LTR MaLR 0 365 3 5421 102 24 32 chrX 25853549 25853904 -151120236 - L1MA7 LINE L1 -1 6290 5934 1885 146 0 3 chrX 25853904 25854198 -151119942 - AluJb SINE Alu -19 293 1 5421 102 24 32 chrX 25854198 25854724 -151119416 - L1MA7 LINE L1 -357 5934 5416 1267 276 75 8 chrX 25854724 25855086 -151119054 + LTR16C LTR ERVL 105 490 -1 4235 137 26 0 chrX 25855577 25856273 -151117867 + L1MB3 LINE L1 5445 6158 -25 679 195 0 8 chrX 25856401 25856519 -151117621 - FLAM_C SINE Alu -25 118 2 1596 242 35 42 chrX 25856623 25857077 -151117063 - LTR16A1 LTR ERVL 0 457 7 358 311 25 8 chrX 25857165 25857287 -151116853 + MIR SINE MIR 35 158 -104 322 302 113 63 chrX 25857339 25857481 -151116659 + MLT1K LTR MaLR 110 243 -345 2165 112 0 0 chrX 25857481 25857777 -151116363 - AluSx SINE Alu -16 296 1 322 302 113 63 chrX 25857777 25858031 -151116109 + MLT1K LTR MaLR 243 526 -62 207 0 0 0 chrX 25858034 25858057 -151116083 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 278 269 0 0 chrX 25858086 25858153 -151115987 + MLT1K LTR MaLR 522 588 0 211 283 19 0 chrX 25858156 25858209 -151115931 + MIR SINE MIR 154 207 -55 209 235 81 128 chrX 25858705 25858854 -151115286 + MER5A DNA MER1_type 48 189 0 1416 249 104 39 chrX 25859468 25859929 -151114211 - LTR16C LTR ERVL 0 491 1 1211 186 54 120 chrX 25859998 25860422 -151113718 - MSTD LTR MaLR 0 396 1 758 233 100 54 chrX 25862333 25862584 -151111556 - MLT1H LTR MaLR 0 549 311 2434 157 60 0 chrX 25862584 25862986 -151111154 + MSTB LTR MaLR 1 426 0 758 233 100 54 chrX 25862986 25863155 -151110985 - MLT1H LTR MaLR -238 311 42 6741 22 4 0 chrX 25863155 25863930 -151110210 + L1PA4 LINE L1 5378 6155 0 758 233 100 54 chrX 25863930 25863974 -151110166 - MLT1H LTR MaLR -507 42 1 277 250 153 51 chrX 25866206 25866402 -151107738 - MLT1J LTR MaLR -8 503 288 847 227 36 5 chrX 25866441 25866635 -151107505 - MLT1J LTR MaLR -311 200 1 1061 309 91 36 chrX 25866964 25867544 -151106596 + L3 LINE CR1 445 1056 -521 652 276 168 67 chrX 25867548 25868029 -151106111 + MLT1H LTR MaLR 20 549 0 510 344 199 12 chrX 25868029 25868224 -151105916 + L3 LINE CR1 1069 1226 -351 1427 209 117 3 chrX 25868224 25868550 -151105590 + MLT1A1 LTR MaLR 1 363 -2 510 344 199 12 chrX 25868550 25868700 -151105440 + L3 LINE CR1 1226 1479 -98 180 171 0 49 chrX 25869730 25869771 -151104369 + L2 LINE L2 3168 3206 -107 262 355 6 29 chrX 25870359 25870531 -151103609 + GA-rich Low_complexity Low_complexity 3 170 0 984 163 27 63 chrX 25870839 25871060 -151103080 + MER20 DNA MER1_type 1 213 -6 583 204 136 14 chrX 25871064 25871211 -151102929 + MER5A DNA MER1_type 25 189 0 908 147 7 0 chrX 25871255 25871398 -151102742 - MER3 DNA MER1_type -52 157 14 2404 158 44 7 chrX 25871649 25872106 -151102034 - Charlie4a DNA MER1_type 0 508 35 500 243 7 56 chrX 25872146 25872290 -151101850 - MLT1J2 LTR MaLR -201 249 113 1767 144 7 3 chrX 25872481 25872773 -151101367 + AluSx SINE Alu 5 297 -15 858 217 50 130 chrX 25873990 25874261 -151099879 + L1MC4 LINE L1 7597 7814 -228 2464 141 8 0 chrX 25874261 25874623 -151099517 + MLT1A1 LTR MaLR 1 365 0 858 217 50 130 chrX 25874623 25874834 -151099306 + L1MC4 LINE L1 7814 8040 -2 207 0 0 0 chrX 25874861 25874884 -151099256 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1783 170 3 0 chrX 25874884 25875168 -151098972 - AluJb SINE Alu -24 288 1 1208 132 159 40 chrX 25875335 25875658 -151098482 + MER33 DNA MER1_type 1 315 -9 397 299 192 23 chrX 25875846 25876082 -151098058 - L2 LINE L2 -315 2957 2686 1241 243 187 39 chrX 25876244 25876762 -151097378 + MLT1G1 LTR MaLR 1 595 0 323 240 94 0 chrX 25877834 25877930 -151096210 - MIR SINE MIR -74 188 84 2904 77 3 11 chrX 25878097 25878475 -151095665 + THE1C LTR MaLR 1 375 0 1192 206 95 14 chrX 25879146 25879442 -151094698 - MER5C DNA MER1_type -4 320 1 189 257 238 38 chrX 25879681 25879786 -151094354 - MIR3 SINE MIR -73 135 10 205 256 12 85 chrX 25880483 25880565 -151093575 + MIR SINE MIR 110 185 -77 536 246 119 0 chrX 25882903 25883037 -151091103 - MIR SINE MIR -99 163 14 389 250 17 75 chrX 25883824 25883944 -151090196 - L2 LINE L2 -8 3305 3193 372 237 127 34 chrX 25883968 25884086 -151090054 + L2 LINE L2 3142 3270 -2 355 292 88 18 chrX 25884094 25884265 -151089875 - MIR SINE MIR -51 211 29 372 157 114 0 chrX 25884418 25884488 -151089652 + L1MC4a LINE L1 6670 6747 -1061 1110 260 92 2 chrX 25884488 25884888 -151089252 + L1MC4 LINE L1 7607 8042 0 441 0 0 0 chrX 25885500 25885549 -151088591 + (TG)n Simple_repeat Simple_repeat 2 50 0 2114 103 0 3 chrX 25885754 25886054 -151088086 + AluSc SINE Alu 1 299 -10 2097 74 3 11 chrX 25886782 25887067 -151087073 + AluSp SINE Alu 1 283 -30 513 306 38 11 chrX 25887148 25887413 -151086727 - L1MEd LINE L1 -3423 2706 2435 390 276 19 19 chrX 25887413 25887518 -151086622 + L2 LINE L2 3194 3298 -15 1747 141 3 24 chrX 25887522 25887813 -151086327 + AluSx SINE Alu 1 285 -27 354 306 10 5 chrX 25887830 25888039 -151086101 - L1MEd LINE L1 -3692 2437 2228 1322 188 18 47 chrX 25888056 25888333 -151085807 + AluJb SINE Alu 5 273 -39 1107 217 57 184 chrX 25888614 25889295 -151084845 + MLT1G LTR MaLR 1 590 0 1678 168 34 0 chrX 25889441 25889614 -151084526 - AluJo SINE Alu -5 307 118 186 71 0 0 chrX 25889614 25889642 -151084498 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1678 168 34 0 chrX 25889642 25889765 -151084375 - AluJo SINE Alu -194 118 1 1749 263 93 88 chrX 25889826 25890087 -151084053 - L1MEd LINE L1 -4887 1232 974 441 0 0 0 chrX 25890087 25890136 -151084004 + (TG)n Simple_repeat Simple_repeat 2 50 0 1749 263 93 88 chrX 25890136 25890154 -151083986 - L1MEd LINE L1 -5145 974 958 1272 225 52 0 chrX 25890154 25890325 -151083815 - AluJo SINE Alu 0 305 112 423 0 0 0 chrX 25890325 25890372 -151083768 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1272 225 52 0 chrX 25890372 25890491 -151083649 - AluJo SINE Alu -193 112 1 1749 263 93 88 chrX 25890491 25890642 -151083498 - L1MEd LINE L1 -5161 958 809 1324 148 184 4 chrX 25890642 25890898 -151083242 + AluJb SINE Alu 1 302 0 1749 263 93 88 chrX 25890898 25891146 -151082994 - L1MEd LINE L1 -5310 809 564 2332 88 0 0 chrX 25891146 25891452 -151082688 + AluSg1 SINE Alu 1 306 -3 1749 263 93 88 chrX 25891452 25891991 -151082149 - L1MEd LINE L1 -5555 564 5 489 208 97 64 chrX 25892330 25892479 -151081661 + MIR SINE MIR 13 170 -92 3260 159 26 13 chrX 25892479 25892518 -151081622 - MLT2B3 LTR ERVL 0 554 517 591 62 0 0 chrX 25892518 25892598 -151081542 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 3260 159 26 13 chrX 25892598 25893105 -151081035 - MLT2B3 LTR ERVL -37 517 1 489 208 97 64 chrX 25893105 25893148 -151080992 + MIR SINE MIR 170 210 -52 419 283 141 1 chrX 25893521 25893679 -151080461 - MIR3 SINE MIR -8 200 21 691 243 129 62 chrX 25894898 25895069 -151079071 + MLT1J2 LTR MaLR 64 222 -228 1042 170 39 0 chrX 25895069 25895251 -151078889 + MER5A DNA MER1_type 1 189 0 691 243 129 62 chrX 25895251 25895420 -151078720 + MLT1J2 LTR MaLR 222 427 -23 1839 178 162 88 chrX 25895926 25896532 -151077608 + MLT1E1 LTR MaLR 4 654 0 674 263 91 93 chrX 25896555 25896991 -151077149 + LTR16A1 LTR ERVL 2 407 -50 200 174 0 43 chrX 25897299 25897345 -151076795 + GA-rich Low_complexity Low_complexity 5 48 0 934 239 132 39 chrX 25897784 25897984 -151076156 - LTR16C LTR ERVL -6 485 305 1803 130 0 70 chrX 25897984 25898315 -151075825 + AluJb SINE Alu 1 308 -4 934 239 132 39 chrX 25898315 25898469 -151075671 - LTR16C LTR ERVL -186 305 98 1661 173 48 57 chrX 25898751 25899140 -151075000 + MLT1B LTR MaLR 1 593 0 813 163 0 22 chrX 25899287 25899422 -151074718 + AluJo SINE Alu 1 132 -170 252 245 43 96 chrX 25899780 25899828 -151074312 + L2 LINE L2 3223 3265 -48 881 215 13 0 chrX 25899828 25899986 -151074154 + AluJo SINE Alu 137 296 -6 252 245 43 96 chrX 25899986 25900031 -151074109 + L2 LINE L2 3265 3311 -2 187 368 0 0 chrX 25900066 25900142 -151073998 - MIR3 SINE MIR -11 197 122 1705 213 90 25 chrX 25900201 25900600 -151073540 + LTR16C LTR ERVL 67 491 0 228 236 47 85 chrX 25900606 25900712 -151073428 - MIR3 SINE MIR -95 113 12 2060 165 25 6 chrX 25901013 25901371 -151072769 - MLT1A1 LTR MaLR 0 365 1 206 185 74 12 chrX 25901575 25901656 -151072484 + (CA)n Simple_repeat Simple_repeat 1 86 0 226 244 61 37 chrX 25901695 25901859 -151072281 + (CA)n Simple_repeat Simple_repeat 2 169 0 1971 266 63 17 chrX 25902713 25903345 -151070795 - MLT2F LTR ERVL 0 663 3 738 252 129 39 chrX 25903431 25903794 -151070346 - MLT1H LTR MaLR 0 542 23 226 327 36 9 chrX 25904351 25904461 -151069679 + MIR SINE MIR 150 262 0 1863 249 92 4 chrX 25904503 25905036 -151069104 - MLT1G LTR MaLR -9 581 2 598 296 76 14 chrX 25905281 25905504 -151068636 - MIR SINE MIR -17 245 9 952 258 189 20 chrX 25906781 25907177 -151066963 + MLT1K LTR MaLR 124 586 -2 2287 86 3 0 chrX 25908019 25908322 -151065818 + AluSp SINE Alu 1 304 -9 499 83 0 24 chrX 25908710 25908794 -151065346 + (TG)n Simple_repeat Simple_repeat 1 82 0 432 236 312 0 chrX 25908931 25909088 -151065052 - MIR SINE MIR -10 252 47 189 326 122 14 chrX 25909196 25909343 -151064797 + L2 LINE L2 3106 3268 -4 350 301 45 15 chrX 25909427 25909560 -151064580 + MIR SINE MIR 126 262 0 689 251 135 28 chrX 25910641 25911114 -151063026 + MLT1H1 LTR MaLR 1 555 0 2236 75 0 3 chrX 25911988 25912280 -151061860 + AluSq SINE Alu 1 291 -22 3124 107 5 0 chrX 25912416 25912848 -151061292 + MER57B LTR ERV1 1 434 0 740 263 28 32 chrX 25913510 25913727 -151060413 - MIR SINE MIR 0 262 47 808 155 31 0 chrX 25913847 25913976 -151060164 + FLAM_A SINE Alu 1 133 0 796 121 14 0 chrX 25913978 25914119 -151060021 + (GGAA)n Simple_repeat Simple_repeat 2 144 0 360 0 0 0 chrX 25915292 25915332 -151058808 + (TC)n Simple_repeat Simple_repeat 2 41 0 245 300 50 20 chrX 25916093 25916193 -151057947 + MIR SINE MIR 39 141 -67 2034 234 71 21 chrX 25918134 25918715 -151055425 - L1ME3 LINE L1 -1 6161 5552 325 160 0 53 chrX 25918778 25918853 -151055287 - MIR SINE MIR 0 262 192 400 306 19 0 chrX 25918999 25919107 -151055033 - MIR SINE MIR -62 146 37 819 249 137 59 chrX 25919235 25919776 -151054364 - MLT1G1 LTR MaLR -2 593 11 700 321 28 5 chrX 25920237 25920455 -151053685 + MIR SINE MIR 20 242 -20 386 160 132 0 chrX 25920535 25920641 -151053499 - L1ME3A LINE L1 -66 6104 5985 222 302 88 85 chrX 25921715 25922043 -151052097 + L2 LINE L2 2896 3224 -48 1302 251 47 21 chrX 25922057 25922479 -151051661 + LTR16C LTR ERVL 4 436 -55 15501 91 14 70 chrX 25922483 25922665 -151051475 - Tigger1 DNA MER2_type 0 2418 2227 741 209 50 0 chrX 25922665 25922833 -151051307 + FRAM SINE Alu 1 175 0 15501 91 14 70 chrX 25922833 25923604 -151050536 - Tigger1 DNA MER2_type -191 2227 1415 2254 108 10 0 chrX 25923604 25923901 -151050239 - AluSx SINE Alu -12 300 1 15501 91 14 70 chrX 25923901 25925367 -151048773 - Tigger1 DNA MER2_type -1003 1415 1 310 137 20 0 chrX 25925367 25925418 -151048722 + LTR16C LTR ERVL 434 485 -6 218 191 0 0 chrX 25925428 25925470 -151048670 + L2 LINE L2 3272 3313 0 579 283 164 0 chrX 25926346 25926565 -151047575 - MIR SINE MIR 0 262 8 2372 88 27 3 chrX 25926695 25926902 -151047238 - MER39 LTR ERV1 0 707 506 2652 124 30 28 chrX 25926902 25927186 -151046954 - MSTA LTR MaLR 0 428 141 2238 104 7 3 chrX 25927186 25927495 -151046645 + AluY SINE Alu 1 310 -1 2652 124 30 28 chrX 25927495 25927637 -151046503 - MSTA LTR MaLR -287 141 1 2372 88 27 3 chrX 25927637 25928023 -151046117 - MER39 LTR ERV1 -201 506 5 1037 268 11 0 chrX 25928027 25928288 -151045852 - LTR16C LTR ERVL -17 474 211 201 244 0 0 chrX 25928447 25928488 -151045652 - MIR SINE MIR -105 157 117 2411 78 0 23 chrX 25929059 25929366 -151044774 + AluSx SINE Alu 2 301 -11 2302 194 32 22 chrX 25929529 25930028 -151044112 + MLT1D LTR MaLR 1 504 -1 241 292 25 119 chrX 25930343 25930545 -151043595 - MER5A DNA MER1_type 0 189 7 2275 83 49 0 chrX 25930668 25930956 -151043184 + AluSq SINE Alu 1 302 -11 1111 261 63 74 chrX 25931164 25931449 -151042691 + MLT1L LTR MaLR 5 282 -333 688 221 15 0 chrX 25931449 25931580 -151042560 + FLAM_A SINE Alu 1 133 0 1111 261 63 74 chrX 25931580 25931865 -151042275 + MLT1L LTR MaLR 282 569 -46 1015 216 71 56 chrX 25931948 25932155 -151041985 + MER2 DNA MER2_type 1 216 -129 404 78 250 0 chrX 25932155 25932219 -151041921 - MADE1 DNA Mariner 0 80 1 1015 216 71 56 chrX 25932219 25932349 -151041791 + MER2 DNA MER2_type 216 343 -2 3035 124 30 14 chrX 25932349 25932847 -151041293 + L1MA7 LINE L1 5784 6289 -2 577 95 0 0 chrX 25932859 25932933 -151041207 - AluSg/x SINE Alu -19 291 218 1727 249 80 16 chrX 25932965 25933455 -151040685 + MLT1G1 LTR MaLR 75 595 0 1242 211 0 0 chrX 25933509 25933732 -151040408 - MER58A DNA MER1_type 0 224 2 324 176 0 0 chrX 25934420 25934488 -151039652 + CT-rich Low_complexity Low_complexity 1 68 0 1600 277 59 23 chrX 25934653 25935508 -151038632 + HAL1 LINE L1 1 993 -1514 1071 236 51 8 chrX 25935513 25935750 -151038390 - MIR SINE MIR -1 261 15 2531 228 51 68 chrX 25935754 25936791 -151037349 + HAL1 LINE L1 998 2017 -490 1020 228 174 45 chrX 25936796 25937125 -151037015 - MLT1H LTR MaLR -4 545 133 2439 169 35 52 chrX 25937125 25937639 -151036501 + MLT1D LTR MaLR 1 505 0 1020 228 174 45 chrX 25937639 25937792 -151036348 - MLT1H LTR MaLR -416 133 1 1044 214 114 46 chrX 25937816 25938185 -151035955 + HAL1 LINE L1 2095 2488 -19 226 216 113 52 chrX 25938959 25939016 -151035124 + MIR SINE MIR 98 165 -97 2169 139 58 0 chrX 25939016 25939362 -151034778 - MER47A DNA MER2_type 0 366 1 226 216 113 52 chrX 25939362 25939401 -151034739 + MIR SINE MIR 165 200 -62 360 111 0 0 chrX 25939402 25939456 -151034684 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1798 159 0 0 chrX 25939460 25939736 -151034404 - AluJo SINE Alu -30 282 7 598 221 86 66 chrX 25939849 25940197 -151033943 + MLT1H LTR MaLR 100 549 0 1540 183 33 36 chrX 25940719 25941025 -151033115 - AluJb SINE Alu -7 305 1 252 321 86 0 chrX 25941097 25941178 -151032962 + L2 LINE L2 3148 3235 -37 830 128 14 5 chrX 25941183 25941410 -151032730 + (TGGA)n Simple_repeat Simple_repeat 1 229 0 430 330 77 0 chrX 25942701 25942895 -151031245 + L3b LINE CR1 1109 1317 -266 327 226 31 56 chrX 25942929 25943105 -151031035 - Charlie7 DNA MER1_type -5 2607 2435 2964 6 0 0 chrX 25943105 25943417 -151030723 - AluYb8 SINE Alu -6 312 1 327 226 31 56 chrX 25943417 25943435 -151030705 - Charlie7 DNA MER1_type -177 2435 2418 224 246 0 72 chrX 25943524 25943593 -151030547 + L2 LINE L2 3203 3266 -47 447 258 18 76 chrX 25943596 25943821 -151030319 - LTR16A1 LTR ERVL -7 450 239 229 179 107 71 chrX 25944452 25944536 -151029604 + MIR SINE MIR 60 146 -62 950 205 92 54 chrX 25945377 25945616 -151028524 + MIR SINE MIR 11 258 -4 395 271 0 11 chrX 25945619 25945800 -151028340 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 397 240 19 86 chrX 25945812 25945959 -151028181 + L1MC4 LINE L1 6526 6709 -1139 360 206 56 75 chrX 25945879 25945986 -151028154 - L1MCa LINE L1 -4364 2062 1958 * 245 197 55 87 chrX 25946498 25946625 -151027515 - MLT1I LTR MaLR -33 376 254 313 283 12 64 chrX 25946998 25947171 -151026969 - MLT1K LTR MaLR -28 560 397 247 293 88 20 chrX 25947211 25947358 -151026782 - MLT1K LTR MaLR -266 322 166 978 218 35 32 chrX 25947619 25947904 -151026236 - MLT1H LTR MaLR -188 367 53 532 40 13 0 chrX 25947904 25947980 -151026160 - AluY SINE Alu -1 311 235 965 129 29 0 chrX 25947980 25948120 -151026020 - AluSq/x SINE Alu -169 144 1 347 270 11 0 chrX 25948120 25948209 -151025931 - MLT1G1 LTR MaLR -490 105 16 248 314 105 16 chrX 25949805 25949929 -151024211 - L2 LINE L2 -1 3312 3178 617 310 55 9 chrX 25950728 25951054 -151023086 + L1MC/D LINE L1 5315 5655 -2153 217 286 0 16 chrX 25951441 25951504 -151022636 + GA-rich Low_complexity Low_complexity 4 65 0 287 261 109 59 chrX 25951553 25951672 -151022468 - MIR SINE MIR -64 144 20 383 247 14 110 chrX 25952043 25952262 -151021878 - MLT1K LTR MaLR 0 588 391 762 270 50 31 chrX 25952299 25952558 -151021582 - MLT1K LTR MaLR -180 408 145 309 89 0 0 chrX 25952674 25952719 -151021421 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 279 194 18 chrX 25952752 25952917 -151021223 - L1MC4a LINE L1 -1630 6178 5985 384 231 22 0 chrX 25953687 25953800 -151020340 - MIR SINE MIR -49 213 99 183 129 0 0 chrX 25954503 25954534 -151019606 + (TG)n Simple_repeat Simple_repeat 2 32 0 2474 211 40 28 chrX 25956135 25956351 -151017789 - MLT1G LTR MaLR -1 589 377 2527 150 52 5 chrX 25956351 25956758 -151017382 + MSTB LTR MaLR 1 426 0 2474 211 40 28 chrX 25956758 25957114 -151017026 - MLT1G LTR MaLR -213 377 10 398 235 34 101 chrX 25957597 25957746 -151016394 - MIR3 SINE MIR -20 188 50 206 196 36 18 chrX 25958889 25958945 -151015195 + GA-rich Low_complexity Low_complexity 2 58 0 460 220 31 76 chrX 25959701 25959862 -151014278 + MIR3 SINE MIR 44 201 -7 1158 196 17 30 chrX 25960116 25960451 -151013689 + AluJo SINE Alu 86 417 0 251 279 0 0 chrX 25960458 25960526 -151013614 - MIR SINE MIR -78 184 117 212 340 204 6 chrX 25960548 25960710 -151013430 + MIR SINE MIR 13 206 -56 210 233 50 17 chrX 25960792 25960852 -151013288 + L2 LINE L2 3207 3268 -4 1122 117 0 0 chrX 25961679 25961858 -151012282 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 547 249 115 10 chrX 25962065 25962274 -151011866 + MIR SINE MIR 5 235 -27 521 262 141 19 chrX 25962314 25962520 -151011620 + MIR SINE MIR 20 250 -12 424 272 236 16 chrX 25962848 25963039 -151011101 + MIR SINE MIR 30 262 0 1605 172 63 0 chrX 25964569 25964854 -151009286 - AluJo SINE Alu -9 303 1 215 266 16 133 chrX 25965090 25965218 -151008922 + L2 LINE L2 2908 3020 -252 441 0 0 0 chrX 25965290 25965339 -151008801 + (CA)n Simple_repeat Simple_repeat 2 50 0 475 257 154 9 chrX 25965528 25965743 -151008397 - MIR SINE MIR 0 262 21 479 207 222 0 chrX 25965896 25966031 -151008109 + MER5A DNA MER1_type 9 173 -16 1894 221 124 7 chrX 25966294 25966833 -151007307 + L1ME3A LINE L1 5569 6170 0 477 0 0 0 chrX 25967226 25967279 -151006861 + (CA)n Simple_repeat Simple_repeat 2 54 0 511 284 78 29 chrX 25967362 25967605 -151006535 - MIR SINE MIR 0 262 8 864 158 27 22 chrX 25967669 25967853 -151006287 + MER53 DNA DNA 5 189 0 256 269 25 59 chrX 25967857 25967976 -151006164 - MIR3 SINE MIR -83 125 11 197 237 13 92 chrX 25968197 25968273 -151005867 + L2 LINE L2 3132 3201 -71 1257 275 199 8 chrX 25968453 25968930 -151005210 - MLT1G1 LTR MaLR 0 595 28 2345 100 3 0 chrX 25969183 25969483 -151004657 - AluSx SINE Alu -11 301 1 496 292 23 26 chrX 25969815 25970063 -151004077 + MLT1H LTR MaLR 53 269 -140 322 262 40 16 chrX 25970129 25970255 -151003885 + MLT1I LTR MaLR 281 409 0 332 271 0 85 chrX 25970597 25970676 -151003464 + L2 LINE L2 3137 3202 -70 2204 81 54 13 chrX 25970676 25970810 -151003330 + AluSx SINE Alu 1 128 -184 2572 80 0 3 chrX 25970810 25971124 -151003016 + AluSp SINE Alu 1 313 0 2204 81 54 13 chrX 25971124 25971287 -151002853 + AluSx SINE Alu 128 310 -2 332 271 0 85 chrX 25971287 25971336 -151002804 + L2 LINE L2 3202 3254 -18 210 37 0 0 chrX 25971745 25971772 -151002368 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 236 271 144 27 chrX 25971859 25972047 -151002093 - L2 LINE L2 -872 2442 2233 1793 252 16 2 chrX 25972060 25972484 -151001656 - LTR16C LTR ERVL -11 480 51 748 188 0 0 chrX 25972563 25972696 -151001444 + FLAM_A SINE Alu 1 133 0 2238 109 3 0 chrX 25972734 25973041 -151001099 - AluSp SINE Alu 0 308 1 1483 275 129 15 chrX 25974981 25975508 -150998632 + MLT1L LTR MaLR 1 587 -28 2505 71 3 0 chrX 25975720 25976016 -150998124 - AluSp SINE Alu -16 297 1 1836 173 87 58 chrX 25976150 25976601 -150997539 + MLT1C LTR MaLR 4 467 0 1823 134 7 34 chrX 25976724 25977015 -150997125 + AluJo SINE Alu 1 283 -29 21 0 0 0 chrX 25977532 25977553 -150996587 + AT_rich Low_complexity Low_complexity 1 21 0 1495 264 41 45 chrX 25977556 25978048 -150996092 + MLT1J LTR MaLR 3 492 -19 1983 221 45 19 chrX 25978304 25978832 -150995308 + MLT1G1 LTR MaLR 1 595 0 372 103 0 0 chrX 25979095 25979153 -150994987 + (CA)n Simple_repeat Simple_repeat 2 59 0 2348 115 0 3 chrX 25979322 25979634 -150994506 - AluSx SINE Alu -1 311 1 1662 166 39 86 chrX 25979759 25980103 -150994037 + MLT1B LTR MaLR 1 325 -65 2510 67 0 0 chrX 25980103 25980400 -150993740 + AluY SINE Alu 2 298 -13 1662 166 39 86 chrX 25980400 25980464 -150993676 + MLT1B LTR MaLR 325 390 0 243 188 0 0 chrX 25980563 25980611 -150993529 + GA-rich Low_complexity Low_complexity 2 49 0 786 247 95 59 chrX 25980872 25981356 -150992784 - L2 LINE L2 -3 3310 2770 2836 209 22 57 chrX 25981417 25982201 -150991939 + L1MC4 LINE L1 7287 8042 0 2145 124 0 3 chrX 25982221 25982534 -150991606 + AluSx SINE Alu 1 312 0 201 190 17 35 chrX 25983927 25983985 -150990155 - MIR SINE MIR -69 139 83 1207 226 38 31 chrX 25984189 25984507 -150989633 - MER5C DNA MER1_type 0 324 5 2454 100 0 0 chrX 25984543 25984843 -150989297 + AluSq SINE Alu 1 300 -13 198 204 0 82 chrX 25984848 25984897 -150989243 + MIR SINE MIR 50 94 -114 548 228 158 19 chrX 25985200 25985358 -150988782 - MER5A DNA MER1_type 0 189 10 647 122 58 93 chrX 25986177 25986316 -150987824 + AluJb SINE Alu 1 134 -178 222 318 47 9 chrX 25986442 25986549 -150987591 - L2 LINE L2 -6 3307 3197 281 268 41 0 chrX 25986609 25986706 -150987434 + LTR16A LTR ERVL 91 191 -259 457 30 30 0 chrX 25987915 25987982 -150986158 + (CA)n Simple_repeat Simple_repeat 1 69 0 1648 144 8 38 chrX 25988384 25988528 -150985612 - AluJb SINE Alu -56 256 122 225 0 0 0 chrX 25988528 25988553 -150985587 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1648 144 8 38 chrX 25988553 25988672 -150985468 - AluJb SINE Alu -190 122 1 787 264 122 21 chrX 25989070 25989358 -150984782 - LTR16C LTR ERVL 0 491 175 198 246 177 46 chrX 25989784 25989914 -150984226 + MIR3 SINE MIR 34 180 -28 2649 139 39 31 chrX 25989977 25990496 -150983644 - L1MB5 LINE L1 0 6174 5652 1249 125 0 0 chrX 25990497 25990665 -150983475 - AluJb SINE Alu -10 302 135 365 140 64 12 chrX 25990665 25990836 -150983304 + (TA)n Simple_repeat Simple_repeat 1 180 0 208 137 39 0 chrX 25990867 25990918 -150983222 + (TA)n Simple_repeat Simple_repeat 1 53 0 2226 108 7 0 chrX 25990918 25991206 -150982934 - AluSq SINE Alu -21 292 3 1002 134 0 0 chrX 25991234 25991398 -150982742 + (TA)n Simple_repeat Simple_repeat 2 165 0 1993 134 3 0 chrX 25991398 25991681 -150982459 - AluSx SINE Alu -28 284 1 735 199 127 0 chrX 25991944 25992110 -150982030 + MIR SINE MIR 4 190 -72 198 258 34 0 chrX 25992939 25992998 -150981142 - MIR SINE MIR -97 165 105 349 197 16 13 chrX 25993063 25993184 -150980956 - MER5A DNA MER1_type -2 187 5 229 224 0 35 chrX 25993824 25993882 -150980258 - MIR3 SINE MIR -1 207 152 574 235 36 18 chrX 25993883 25994049 -150980091 + MER117 DNA MER1_type 3 171 -26 2125 185 41 35 chrX 25994179 25994671 -150979469 + Charlie4a DNA MER1_type 14 508 0 226 260 0 0 chrX 25995243 25995293 -150978847 - MIR3 SINE MIR -8 200 151 198 279 171 27 chrX 25995346 25995457 -150978683 - MIR SINE MIR -64 144 18 840 262 126 49 chrX 25995896 25996262 -150977878 - MLT1J2 LTR MaLR -25 425 32 2293 80 0 28 chrX 25996329 25996649 -150977491 + AluSg SINE Alu 1 312 0 479 154 135 0 chrX 25996859 25996963 -150977177 - L2 LINE L2 -1 3312 3195 1370 241 97 8 chrX 25997239 25997609 -150976531 - LTR16C LTR ERVL 0 491 89 1951 161 0 3 chrX 25997871 25998175 -150975965 + AluJb SINE Alu 1 303 -9 780 301 104 26 chrX 25998178 25998663 -150975477 + L2 LINE L2 2776 3313 0 509 196 42 42 chrX 25999089 25999229 -150974911 + MIR SINE MIR 114 252 -10 496 241 167 9 chrX 26000383 26000534 -150973606 + MER5A DNA MER1_type 3 183 -6 393 253 45 34 chrX 26001460 26001638 -150972502 - L1ME4a LINE L1 -2 6119 5940 529 226 147 74 chrX 26001744 26001934 -150972206 - MER63A DNA MER1_type -5 205 2 461 242 11 0 chrX 26001949 26002044 -150972096 + MER45 DNA AcHobo 1 96 -944 258 279 88 60 chrX 26002162 26002377 -150971763 + L2 LINE L2 2222 2442 -872 210 37 0 0 chrX 26002464 26002491 -150971649 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 1698 132 51 55 chrX 26002949 26003112 -150971028 - AluSx SINE Alu -2 310 147 1621 186 0 3 chrX 26003112 26003413 -150970727 - AluSp SINE Alu 0 313 14 1698 132 51 55 chrX 26003413 26003560 -150970580 - AluSx SINE Alu -165 147 1 668 122 0 0 chrX 26003749 26003847 -150970293 - AluS SINE Alu -214 99 2 296 164 16 0 chrX 26003848 26003909 -150970231 + MSTD LTR MaLR 327 388 -8 269 229 0 0 chrX 26003954 26004015 -150970125 + MER45 DNA AcHobo 1517 1577 -4 586 279 117 25 chrX 26004015 26004446 -150969694 + MLT1H LTR MaLR 67 590 0 2297 108 0 0 chrX 26004761 26005057 -150969083 + AluSx SINE Alu 1 296 -16 331 263 51 25 chrX 26005058 26005176 -150968964 + MER5A DNA MER1_type 66 186 -3 324 270 35 17 chrX 26005078 26005193 -150968947 - MER5A DNA MER1_type -72 117 1 * 787 259 177 10 chrX 26005627 26005932 -150968208 - LTR33A LTR ERVL -165 358 3 478 327 31 0 chrX 26006075 26006234 -150967906 + LTR16C LTR ERVL 87 250 -241 1018 272 43 76 chrX 26007521 26007985 -150966155 - MLT1J LTR MaLR -5 506 59 2345 146 3 5 chrX 26007985 26008376 -150965764 + MLT1B LTR MaLR 1 390 0 1018 272 43 76 chrX 26008376 26008422 -150965718 - MLT1J LTR MaLR -452 59 13 632 108 198 0 chrX 26009256 26009367 -150964773 - FLAM_C SINE Alu 0 133 1 534 183 58 8 chrX 26009387 26009507 -150964633 - AluJ SINE Alu -11 301 176 1287 118 0 54 chrX 26009526 26009730 -150964410 - AluJ SINE Alu -119 193 1 1871 108 39 105 chrX 26009737 26010069 -150964071 - AluSg SINE Alu 0 310 1 507 280 101 0 chrX 26010133 26010301 -150963839 + LTR50 LTR ERVL 1 185 -610 912 310 84 69 chrX 26010352 26011094 -150963046 - HAL1 LINE L1 -939 1568 816 312 177 9 17 chrX 26011265 26011331 -150962809 - MLT1A1 LTR MaLR 0 396 297 41 21 0 0 chrX 26011333 26011381 -150962759 + AT_rich Low_complexity Low_complexity 1 48 0 1952 182 0 0 chrX 26011381 26011683 -150962457 + AluJo SINE Alu 1 302 -10 1524 225 23 23 chrX 26011687 26012083 -150962057 + L1ME3A LINE L1 5771 6166 -4 1481 158 101 36 chrX 26012083 26012361 -150961779 + AluJb SINE Alu 1 296 -16 1776 156 84 22 chrX 26213978 26214299 -150759841 + MER7A DNA MER2_type 8 346 0 709 184 31 92 chrX 26214299 26214461 -150759679 - MER2 DNA MER2_type -193 152 1 1564 222 80 36 chrX 26214463 26214789 -150759351 - L1MC4 LINE L1 -395 7647 7337 1978 117 46 0 chrX 26214789 26215071 -150759069 + AluSx SINE Alu 1 295 -17 1564 222 80 36 chrX 26215071 26215315 -150758825 - L1MC4 LINE L1 -705 7337 7105 1847 157 3 20 chrX 26215315 26215621 -150758519 + AluJo SINE Alu 1 301 -11 1564 222 80 36 chrX 26215621 26215969 -150758171 - L1MC4 LINE L1 -937 7105 6530 845 188 6 0 chrX 26215971 26216131 -150758009 - AluSg/x SINE Alu -17 292 132 231 279 0 15 chrX 26216131 26216199 -150757941 - L1MC4 LINE L1 -1515 6527 6461 1135 254 83 26 chrX 26217116 26217584 -150756556 - L1MC4 LINE L1 -145 7897 7403 295 160 43 106 chrX 26218389 26218424 -150755716 + MER69 DNA AcHobo 2054 2090 -436 2352 76 0 13 chrX 26218424 26218727 -150755413 + AluSg SINE Alu 1 299 -11 295 160 43 106 chrX 26218727 26218785 -150755355 + MER69 DNA AcHobo 2090 2141 -385 2092 75 16 43 chrX 26218790 26219095 -150755045 + AluY SINE Alu 1 297 -14 4837 128 22 3 chrX 26219095 26219810 -150754330 + L1PA15 LINE L1 5433 6161 -4 560 271 79 11 chrX 26219907 26220084 -150754056 + REP3 LTR ERV 1 189 -373 468 212 110 27 chrX 26220473 26220619 -150753521 + L2 LINE L2 2807 2964 -349 852 243 6 0 chrX 26221224 26221397 -150752743 - FAM SINE Alu 0 175 2 2209 110 13 3 chrX 26221411 26221720 -150752420 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26221730 26221754 -150752386 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2191 105 3 7 chrX 26221754 26222037 -150752103 - AluSx SINE Alu -28 284 1 2058 134 3 7 chrX 26222047 26222352 -150751788 - AluSx SINE Alu -8 304 1 2373 82 7 10 chrX 26222409 26222712 -150751428 - AluSp SINE Alu -11 302 1 456 201 8 44 chrX 26222716 26222867 -150751273 - L1ME3 LINE L1 0 6162 6017 1211 233 124 79 chrX 26222867 26223851 -150750289 - L1MC5 LINE L1 -786 7175 6163 2188 99 0 7 chrX 26223870 26224153 -150749987 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26224153 26224178 -150749962 + (TA)n Simple_repeat Simple_repeat 2 27 0 1701 170 106 117 chrX 26224217 26224746 -150749394 - MLT1F1 LTR MaLR -2 565 18 547 309 60 73 chrX 26224810 26225255 -150748885 - L1MC4a LINE L1 -1761 6047 5609 2277 92 3 3 chrX 26225255 26225550 -150748590 - AluSg SINE Alu -15 295 1 547 309 60 73 chrX 26225550 26225650 -150748490 - L1MC4a LINE L1 -2199 5609 5509 729 80 0 0 chrX 26225695 26225783 -150748357 - AluSg1 SINE Alu -220 89 2 479 231 8 30 chrX 26225836 26225970 -150748170 - L1ME3 LINE L1 0 6162 6032 2074 114 0 0 chrX 26226027 26226307 -150747833 - AluSx SINE Alu -32 280 1 885 334 55 30 chrX 26226307 26227053 -150747087 - L1MC4a LINE L1 -881 6927 6163 2247 79 0 10 chrX 26227068 26227359 -150746781 - AluSx SINE Alu -24 288 1 1610 171 103 109 chrX 26227389 26227924 -150746216 - MLT1F1 LTR MaLR 0 595 18 602 300 66 70 chrX 26227988 26228589 -150745551 - L1MC4a LINE L1 -313 5808 5455 1831 114 0 4 chrX 26228996 26229242 -150744898 - AluSg SINE Alu -65 245 1 1795 139 10 42 chrX 26229243 26229576 -150744564 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26229792 26229823 -150744317 + AT_rich Low_complexity Low_complexity 1 31 0 2482 64 0 7 chrX 26229823 26230119 -150744021 - AluSq SINE Alu -19 294 1 1203 240 101 21 chrX 26230259 26230596 -150743544 - LTR16A LTR ERVL 0 450 87 310 221 74 0 chrX 26230782 26230896 -150743244 - MLT1J LTR MaLR -327 288 104 312 298 118 52 chrX 26231008 26231297 -150742843 - L1ME3 LINE L1 -281 5840 5533 2136 105 14 0 chrX 26231307 26231593 -150742547 - AluSg SINE Alu -19 291 2 974 120 7 7 chrX 26231640 26231790 -150742350 + FRAM SINE Alu 22 171 -5 446 108 0 0 chrX 26231795 26231860 -150742280 - Alu SINE Alu -11 300 236 404 193 0 36 chrX 26231988 26232071 -150742069 - MLT1H LTR MaLR -375 174 95 304 289 44 0 chrX 26232085 26232175 -150741965 - L1ME3 LINE L1 -2192 5616 5523 21 82 0 0 chrX 26232343 26232392 -150741748 + AT_rich Low_complexity Low_complexity 1 49 0 2324 83 0 0 chrX 26232554 26232844 -150741296 - AluY SINE Alu -21 290 1 1003 211 65 80 chrX 26233117 26233516 -150740624 - MLT1J1 LTR MaLR -52 394 2 1001 248 232 3 chrX 26233517 26233836 -150740304 - L2 LINE L2 -720 2594 2203 615 179 95 48 chrX 26233876 26234044 -150740096 + MER104 DNA MER2_type 5 180 0 183 130 0 87 chrX 26234071 26234117 -150740023 - MIR SINE MIR -16 246 205 685 269 58 24 chrX 26234143 26234351 -150739789 + MIR SINE MIR 3 217 -45 251 206 88 15 chrX 26234354 26234422 -150739718 + MIR SINE MIR 190 262 0 2195 88 0 17 chrX 26234448 26234745 -150739395 + AluSx SINE Alu 1 292 -20 393 251 68 12 chrX 26234758 26234921 -150739219 + L1M4 LINE L1 3497 3668 -2478 654 270 28 17 chrX 26234929 26235107 -150739033 - MIR SINE MIR -63 199 20 281 191 0 0 chrX 26235114 26235182 -150738958 - L1MA7 LINE L1 0 6291 6224 2156 103 3 3 chrX 26235368 26235659 -150738481 - AluSg SINE Alu -15 295 5 2210 127 0 0 chrX 26235766 26236066 -150738074 - AluSx SINE Alu -12 300 1 955 185 52 30 chrX 26236711 26236979 -150737161 + LTR1B LTR ERV1 37 347 -479 183 167 0 0 chrX 26237442 26237484 -150736656 + A-rich Low_complexity Low_complexity 1 42 0 306 0 0 0 chrX 26239255 26239289 -150734851 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 229 208 83 0 chrX 26239378 26239426 -150734714 - MARNA DNA Mariner -252 334 283 2335 86 3 13 chrX 26239759 26240063 -150734077 - AluSp SINE Alu -12 301 1 674 261 44 0 chrX 26240166 26240346 -150733794 + MER5A DNA MER1_type 2 189 0 189 94 0 0 chrX 26241151 26241183 -150732957 + (A)n Simple_repeat Simple_repeat 1 32 0 2229 116 0 0 chrX 26241286 26241589 -150732551 - AluSq SINE Alu -10 303 1 461 205 251 67 chrX 26242295 26242392 -150731748 - MIR SINE MIR -2 260 182 1954 93 100 0 chrX 26242392 26242672 -150731468 - AluY SINE Alu -3 308 1 461 205 251 67 chrX 26242672 26242794 -150731346 - MIR SINE MIR -80 182 19 1958 143 73 55 chrX 26243231 26243512 -150730628 + L1MB5 LINE L1 5768 6060 -114 2505 52 0 0 chrX 26243512 26243801 -150730339 + AluY SINE Alu 5 293 -18 1958 143 73 55 chrX 26243801 26243918 -150730222 + L1MB5 LINE L1 6060 6173 -1 279 174 23 105 chrX 26244258 26244344 -150729796 + L2 LINE L2 3234 3312 -1 736 168 15 53 chrX 26244541 26244672 -150729468 - FLAM_C SINE Alu -15 128 3 3023 201 46 8 chrX 26245336 26245947 -150728193 - MER82 DNA MER2_type -8 645 12 2240 110 3 7 chrX 26246854 26247155 -150726985 - AluSx SINE Alu -12 300 1 1720 158 17 30 chrX 26247290 26247587 -150726553 - AluJo SINE Alu -19 293 1 2321 89 3 0 chrX 26247771 26248074 -150726066 + AluSq SINE Alu 1 304 -9 2021 92 43 0 chrX 26248585 26248866 -150725274 - AluSc SINE Alu -16 293 1 311 308 37 0 chrX 26249003 26249110 -150725030 + L2 LINE L2 1752 1862 -1452 736 283 201 48 chrX 26249171 26249981 -150724159 + L2 LINE L2 2037 2970 -344 995 237 49 89 chrX 26250180 26250231 -150723909 + MER46C DNA MER2_type 1 53 -285 2382 78 0 7 chrX 26250231 26250526 -150723614 - AluSg SINE Alu -17 293 1 995 237 49 89 chrX 26250526 26250548 -150723592 + MER46C DNA MER2_type 53 74 -264 2181 83 38 3 chrX 26250548 26250836 -150723304 - AluSx SINE Alu -14 298 1 995 237 49 89 chrX 26250836 26251111 -150723029 + MER46C DNA MER2_type 74 336 -2 1787 173 20 10 chrX 26251501 26251802 -150722338 - AluJo SINE Alu -8 304 1 269 419 0 7 chrX 26251889 26252025 -150722115 - MER5A DNA MER1_type -9 180 46 1797 162 0 14 chrX 26253610 26253900 -150720240 - AluJb SINE Alu -22 290 5 2062 102 9 65 chrX 26254423 26254746 -150719394 - AluSx SINE Alu -6 306 2 445 283 151 23 chrX 26255918 26256137 -150718003 - MIR SINE MIR 0 262 16 851 62 0 18 chrX 26257021 26257134 -150717006 - L1PA6 LINE L1 -3 6151 6041 485 165 0 24 chrX 26257847 26257931 -150716209 - MER58B DNA MER1_type -1 340 259 1608 126 103 4 chrX 26257931 26258192 -150715948 - MER47A DNA MER2_type 0 366 80 831 206 67 6 chrX 26258192 26258357 -150715783 - FAM SINE Alu 0 175 1 22 0 0 0 chrX 26259007 26259029 -150715111 + AT_rich Low_complexity Low_complexity 1 22 0 6774 54 14 32 chrX 26259032 26259940 -150714200 - SVA Other Other -3 1383 492 1587 197 13 22 chrX 26260217 26260532 -150713608 + AluJo SINE Alu 1 312 0 207 0 0 0 chrX 26260547 26260570 -150713570 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 1012 243 101 72 chrX 26261916 26262500 -150711640 + L1MC4 LINE L1 7300 7910 -132 2377 75 0 16 chrX 26262500 26262841 -150711299 + AluY SINE Alu 1 311 0 1012 243 101 72 chrX 26262841 26262977 -150711163 + L1MC4 LINE L1 7910 8041 -1 2104 112 31 0 chrX 26263183 26263470 -150710670 + AluSx SINE Alu 1 296 -16 970 223 92 121 chrX 26264015 26264123 -150710017 + L1MC5 LINE L1 7099 7209 -752 2224 109 16 3 chrX 26264123 26264427 -150709713 + AluSx SINE Alu 1 308 -4 1933 90 33 43 chrX 26264427 26264728 -150709412 + AluSx SINE Alu 1 298 -14 970 223 92 121 chrX 26264728 26265316 -150708824 + L1MC5 LINE L1 7208 7770 -191 2419 86 6 6 chrX 26265316 26265629 -150708511 + AluSq SINE Alu 1 313 0 970 223 92 121 chrX 26265629 26265773 -150708367 + L1MC5 LINE L1 7770 7917 -44 398 266 50 58 chrX 26266451 26266590 -150707550 + MIR SINE MIR 41 178 -84 1429 159 169 0 chrX 26266636 26266932 -150707208 - MER7A DNA MER2_type -1 345 2 1259 179 70 23 chrX 26266936 26267509 -150706631 + L1MB3 LINE L1 4900 5444 -739 2326 116 0 0 chrX 26267509 26267819 -150706321 + AluSx SINE Alu 1 310 -2 1259 179 70 23 chrX 26267819 26268332 -150705808 + L1MB3 LINE L1 5444 6182 -1 2268 116 0 0 chrX 26269525 26269818 -150704322 - AluSx SINE Alu -19 293 1 1056 141 0 0 chrX 26269949 26270098 -150704042 - AluJb SINE Alu -14 298 150 202 323 73 0 chrX 26271554 26271650 -150702490 + MIR SINE MIR 108 210 -52 2224 70 18 80 chrX 26271778 26272105 -150702035 + AluSq SINE Alu 1 307 -6 2403 94 10 0 chrX 26272293 26272602 -150701538 - AluSx SINE Alu 0 312 1 1688 156 3 20 chrX 26273484 26273779 -150700361 - AluJb SINE Alu -22 290 1 1585 119 8 27 chrX 26275715 26275975 -150698165 + MER1B DNA MER1_type 85 339 0 984 210 22 0 chrX 26275990 26276171 -150697969 + MER5A DNA MER1_type 3 187 -2 2326 102 0 0 chrX 26276172 26276475 -150697665 + AluSc SINE Alu 1 303 -6 361 325 0 17 chrX 26276599 26276719 -150697421 + L2 LINE L2 3189 3306 -7 353 304 78 9 chrX 26276723 26276838 -150697302 + L2 LINE L2 3181 3303 -10 2324 93 3 0 chrX 26276932 26277234 -150696906 - AluSp SINE Alu -10 303 1 843 208 19 0 chrX 26277674 26277828 -150696312 - FRAM SINE Alu -22 154 1 1778 156 3 7 chrX 26277835 26278118 -150696022 - AluJb SINE Alu -22 290 9 840 310 89 43 chrX 26278128 26278801 -150695339 + L2 LINE L2 2590 3298 -15 258 273 0 0 chrX 26278975 26279052 -150695088 - Charlie8 DNA MER1_type 0 2417 2341 186 313 54 62 chrX 26279171 26279283 -150694857 - L2 LINE L2 -188 3084 2974 * 540 365 60 0 chrX 26279264 26279497 -150694643 - L2 LINE L2 -493 2821 2575 314 125 42 83 chrX 26280106 26280157 -150693983 - MER46C DNA MER2_type -6 332 283 2372 95 0 3 chrX 26280157 26280461 -150693679 - AluSq SINE Alu -10 303 1 314 125 42 83 chrX 26280461 26280481 -150693659 - MER46C DNA MER2_type -55 283 264 21 0 0 0 chrX 26283656 26283677 -150690463 + AT_rich Low_complexity Low_complexity 1 21 0 836 190 0 0 chrX 26283695 26283837 -150690303 - FRAM SINE Alu -39 137 1 1407 207 109 41 chrX 26283935 26284374 -150689766 + L1ME1 LINE L1 5627 6104 -62 2139 96 3 23 chrX 26284374 26284676 -150689464 + AluSx SINE Alu 1 296 -16 1407 207 109 41 chrX 26284676 26284723 -150689417 + L1ME1 LINE L1 6104 6146 -20 450 238 26 79 chrX 26285916 26286181 -150687959 - L1MC5 LINE L1 -50 7911 7661 200 222 0 19 chrX 26287309 26287363 -150686777 + A-rich Low_complexity Low_complexity 2 54 0 207 125 0 0 chrX 26287665 26287705 -150686435 + (A)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chrX 26288213 26288236 -150685904 + AT_rich Low_complexity Low_complexity 1 23 0 2348 90 0 0 chrX 26288270 26288569 -150685571 + AluSq SINE Alu 3 301 -12 31 26 0 0 chrX 26288700 26288738 -150685402 + AT_rich Low_complexity Low_complexity 1 38 0 1698 144 25 21 chrX 26289121 26289405 -150684735 - AluJb SINE Alu -14 298 14 1293 166 36 61 chrX 26289648 26289758 -150684382 + AluJo SINE Alu 37 148 -164 2322 102 0 6 chrX 26289758 26290071 -150684069 + AluSx SINE Alu 1 311 -1 1293 166 36 61 chrX 26290071 26290238 -150683902 + AluJo SINE Alu 148 307 -5 405 259 104 0 chrX 26290248 26290383 -150683757 + MIR SINE MIR 71 219 -43 193 246 0 16 chrX 26290595 26290656 -150683484 + MIR SINE MIR 160 219 -43 459 329 93 14 chrX 26290754 26290970 -150683170 - MIR SINE MIR -10 252 20 282 287 66 0 chrX 26291435 26291557 -150682583 + HAL1 LINE L1 11 140 -2367 5058 136 46 42 chrX 26291903 26293090 -150681050 + L1M2 LINE L1 4293 5466 -745 2288 93 3 13 chrX 26293110 26293422 -150680718 + AluSq SINE Alu 5 313 0 2571 214 124 31 chrX 26293431 26294461 -150679679 + L1MC4 LINE L1 6772 7897 -145 236 242 0 15 chrX 26295383 26295449 -150678691 + L1MC4 LINE L1 6463 6527 -1515 1277 74 6 0 chrX 26295449 26295611 -150678529 + AluSg/x SINE Alu 134 296 -16 1396 214 80 36 chrX 26295611 26295962 -150678178 + L1MC4 LINE L1 6527 6861 -1181 1870 157 3 20 chrX 26295962 26296268 -150677872 - AluJo SINE Alu -11 301 1 1396 214 80 36 chrX 26296268 26296512 -150677628 + L1MC4 LINE L1 6861 7093 -949 1977 117 46 0 chrX 26296512 26296794 -150677346 - AluSx SINE Alu -17 295 1 1396 214 80 36 chrX 26296794 26297120 -150677020 + L1MC4 LINE L1 7093 7647 -395 833 207 56 95 chrX 26297122 26297284 -150676856 + MER2 DNA MER2_type 1 168 -177 1924 138 80 12 chrX 26297284 26297610 -150676530 - MER7A DNA MER2_type 0 346 1 833 207 56 95 chrX 26297610 26297805 -150676335 + MER2 DNA MER2_type 168 344 -1 286 314 105 16 chrX 26297823 26298014 -150676126 + L1MC4 LINE L1 7680 7887 -155 412 279 213 15 chrX 26298226 26298767 -150675373 + HAL1 LINE L1 1016 1663 -844 317 298 118 22 chrX 26298917 26299095 -150675045 + HAL1 LINE L1 2219 2413 -94 1142 225 102 19 chrX 26299131 26299446 -150674694 - MER58B DNA MER1_type 0 341 1 1013 181 0 11 chrX 26300143 26300320 -150673820 - FRAM SINE Alu -2 174 1 1076 205 76 9 chrX 26300376 26300600 -150673540 - MER8 DNA MER2_type 0 239 1 190 350 90 50 chrX 26300766 26300866 -150673274 + L2 LINE L2 3137 3240 -32 237 329 26 0 chrX 26301145 26301221 -150672919 + L2 LINE L2 3234 3311 -2 282 180 0 33 chrX 26301648 26301709 -150672431 - Tigger4(Zombi) DNA MER2_type 0 2731 2673 226 132 0 26 chrX 26301687 26301725 -150672415 - Tigger4(Zombi) DNA MER2_type -2694 37 1 * 2162 103 20 3 chrX 26301751 26302043 -150672097 + AluSq SINE Alu 1 297 -16 25 0 0 0 chrX 26302059 26302084 -150672056 + AT_rich Low_complexity Low_complexity 1 25 0 766 169 8 0 chrX 26302232 26302362 -150671778 + FLAM_C SINE Alu 1 131 -2 1640 181 48 10 chrX 26302711 26303004 -150671136 + AluJo SINE Alu 1 304 -8 198 278 14 42 chrX 26305820 26305892 -150668248 - L2 LINE L2 0 3272 3203 1830 130 0 0 chrX 26305981 26306234 -150667906 + AluSx SINE Alu 1 253 -59 254 382 123 20 chrX 26306691 26306895 -150667245 + MIR SINE MIR 20 244 -18 2228 97 17 0 chrX 26307337 26307636 -150666504 + AluSc SINE Alu 1 304 -5 1745 149 64 4 chrX 26307756 26308037 -150666103 - AluJb SINE Alu -14 298 1 803 110 8 36 chrX 26309630 26309871 -150664269 + AluJo SINE Alu 13 305 -7 2357 92 13 0 chrX 26309871 26310177 -150663963 + AluSx SINE Alu 1 310 -2 425 209 37 105 chrX 26310180 26310371 -150663769 - L1MC4 LINE L1 -52 7990 7813 331 217 250 53 chrX 26310405 26310557 -150663583 - MER20 DNA MER1_type 0 219 38 554 234 134 19 chrX 26310583 26310852 -150663288 - L1MC4 LINE L1 -295 7747 7448 630 138 60 0 chrX 26310854 26310970 -150663170 - L1MC4 LINE L1 -697 7345 7223 213 39 0 0 chrX 26311170 26311196 -150662944 + (TA)n Simple_repeat Simple_repeat 1 26 0 380 162 135 9 chrX 26311507 26311618 -150662522 - L1MB7 LINE L1 -37 6958 6834 470 175 92 35 chrX 26311652 26311683 -150662457 - L1MB7 LINE L1 -240 6749 6721 2075 120 20 0 chrX 26311683 26311983 -150662157 + AluSx SINE Alu 1 306 -6 470 175 92 35 chrX 26311983 26312403 -150661737 - L1MB7 LINE L1 -268 6721 6107 * 1044 216 22 11 chrX 26312394 26312672 -150661468 - L1MB7 LINE L1 -1982 4975 4695 305 89 0 0 chrX 26312718 26312763 -150661377 + Charlie3 DNA MER1_type 37 81 -2629 * 534 78 0 13 chrX 26312762 26312839 -150661301 + Charlie3 DNA MER1_type 2627 2702 -8 1699 245 113 41 chrX 26312883 26313888 -150660252 - L1MB7 LINE L1 -4615 2344 1259 2604 300 41 32 chrX 26314524 26315460 -150658680 - L1MB7 LINE L1 -5914 945 2 754 205 76 5 chrX 26315526 26315711 -150658429 - L1MC4 LINE L1 -1025 7017 6820 181 120 0 0 chrX 26316731 26316756 -150657384 - MIR SINE MIR -26 236 212 248 283 33 0 chrX 26316759 26316819 -150657321 - MIR SINE MIR -156 106 45 193 333 133 28 chrX 26319429 26319499 -150654641 - MIR3 SINE MIR -6 202 141 2231 104 7 0 chrX 26319499 26319807 -150654333 - AluSx SINE Alu -2 310 1 193 333 133 28 chrX 26319807 26319916 -150654224 - MIR3 SINE MIR -67 141 4 2380 71 0 7 chrX 26321499 26321794 -150652346 + AluSx SINE Alu 1 293 -19 331 269 19 0 chrX 26321840 26321944 -150652196 - L1ME LINE L1 -420 5701 5596 185 184 53 0 chrX 26322614 26322652 -150651488 + MIR3 SINE MIR 164 203 -5 372 192 0 27 chrX 26323420 26323493 -150650647 + MER20 DNA MER1_type 67 137 -82 778 144 2 14 chrX 26323540 26323680 -150650460 + MSTD LTR MaLR 277 393 -3 2320 103 3 0 chrX 26323754 26324054 -150650086 + AluSx SINE Alu 3 303 -9 21 0 0 0 chrX 26324308 26324329 -150649811 + AT_rich Low_complexity Low_complexity 1 21 0 634 184 152 20 chrX 26324378 26324622 -150649518 + L1MC5 LINE L1 7452 7727 -234 376 240 72 72 chrX 26324635 26325004 -150649136 + L1ME LINE L1 5153 5516 -654 272 328 42 34 chrX 26325615 26325734 -150648406 - MER5A DNA MER1_type -9 180 61 750 257 121 52 chrX 26325843 26326248 -150647892 - L1ME3A LINE L1 -207 5963 5531 1100 110 7 0 chrX 26327131 26327285 -150646855 + AluSq SINE Alu 147 301 -12 266 222 159 8 chrX 26328600 26328726 -150645414 - MIR SINE MIR -13 249 105 755 117 25 17 chrX 26329018 26329138 -150645002 - FLAM_C SINE Alu -14 129 9 354 222 148 0 chrX 26329181 26329289 -150644851 - MER5C DNA MER1_type -200 124 1 2098 118 16 10 chrX 26331821 26332127 -150642013 - AluSq SINE Alu -5 308 1 33 0 0 0 chrX 26333915 26333948 -150640192 + AT_rich Low_complexity Low_complexity 1 33 0 2048 133 0 7 chrX 26335044 26335353 -150638787 + AluSx SINE Alu 1 307 -5 2270 78 0 0 chrX 26335575 26335856 -150638284 + AluSx SINE Alu 1 281 -31 273 234 13 13 chrX 26335907 26335984 -150638156 + HsTC2 DNA Tc2 3 79 -1819 424 309 64 60 chrX 26336022 26336287 -150637853 - L1MEd LINE L1 -5494 625 360 338 243 0 0 chrX 26336331 26336405 -150637735 + HsTC2 DNA Tc2 1824 1897 -1 210 287 53 53 chrX 26336406 26336500 -150637640 - MIR SINE MIR -160 102 9 1643 95 44 5 chrX 26337551 26338144 -150635996 + L1MA3 LINE L1 5636 6300 -5 26 50 0 0 chrX 26338148 26338188 -150635952 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chrX 26338735 26338757 -150635383 + AT_rich Low_complexity Low_complexity 1 22 0 1455 157 44 68 chrX 26338757 26338902 -150635238 + AluJb SINE Alu 1 137 -175 2651 55 0 0 chrX 26338902 26339209 -150634931 + AluSq SINE Alu 1 307 -6 1455 157 44 68 chrX 26339209 26339357 -150634783 + AluJb SINE Alu 137 287 -25 35 24 0 0 chrX 26340139 26340181 -150633959 + AT_rich Low_complexity Low_complexity 1 42 0 2327 103 0 0 chrX 26340481 26340791 -150633349 + AluSx SINE Alu 3 312 0 1856 76 13 0 chrX 26340791 26341027 -150633113 + AluSc SINE Alu 71 309 0 23 0 0 0 chrX 26341214 26341237 -150632903 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 26341277 26341298 -150632842 + AT_rich Low_complexity Low_complexity 1 21 0 1837 168 30 30 chrX 26342613 26342952 -150631188 - MER2 DNA MER2_type -6 339 1 483 259 153 23 chrX 26342981 26343197 -150630943 - MIR SINE MIR -17 245 2 355 283 177 27 chrX 26344027 26344508 -150629632 - L1ME4a LINE L1 -54 6067 5515 349 220 0 22 chrX 26345664 26345755 -150628385 + L1M4 LINE L1 3034 3122 -3024 333 0 0 0 chrX 26345785 26345822 -150628318 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chrX 26345821 26345861 -150628279 + (TG)n Simple_repeat Simple_repeat 2 41 0 462 272 88 28 chrX 26345943 26346130 -150628010 + L1M4 LINE L1 3283 3457 -2689 2181 99 0 10 chrX 26346130 26346423 -150627717 + AluSg SINE Alu 1 290 -20 462 272 88 28 chrX 26346423 26346599 -150627541 + L1M4 LINE L1 3457 3668 -2478 668 270 28 17 chrX 26346607 26346785 -150627355 - MIR SINE MIR -63 199 20 256 182 0 0 chrX 26346794 26346860 -150627280 - L1MA7 LINE L1 -2 6289 6224 2158 100 3 3 chrX 26347046 26347337 -150626803 - AluSg SINE Alu -15 295 5 2191 127 0 0 chrX 26347444 26347744 -150626396 - AluSx SINE Alu -12 300 1 2062 163 153 38 chrX 26348389 26349055 -150625085 + LTR1B LTR ERV1 37 826 0 667 207 96 0 chrX 26349226 26349361 -150624779 + MLT1B LTR MaLR 187 334 -56 546 270 22 56 chrX 26349650 26349828 -150624312 + MER5B DNA MER1_type 1 172 -6 297 236 164 68 chrX 26350000 26350220 -150623920 - MIR SINE MIR -2 260 20 2011 118 0 33 chrX 26350359 26350664 -150623476 + AluSx SINE Alu 4 298 -14 2299 78 0 3 chrX 26350707 26351001 -150623139 + AluY SINE Alu 1 293 -18 494 242 127 6 chrX 26351166 26351331 -150622809 - MIR SINE MIR -76 186 2 241 218 57 76 chrX 26351334 26351498 -150622642 + L1ME LINE L1 5391 5553 -613 1293 81 0 0 chrX 26351664 26351825 -150622315 - AluSg/x SINE Alu -19 291 131 560 140 11 0 chrX 26352181 26352274 -150621866 - AluJ/FLAM SINE Alu -218 94 1 307 316 35 35 chrX 26352455 26352626 -150621514 + L2 LINE L2 1890 2060 -1254 2000 131 58 53 chrX 26352983 26353348 -150620792 + L1MB3 LINE L1 5765 6127 -56 2274 104 3 0 chrX 26353348 26353645 -150620495 + AluSx SINE Alu 1 298 -14 2198 82 61 0 chrX 26353646 26353939 -150620201 + AluY SINE Alu 1 311 0 2000 131 58 53 chrX 26353939 26353984 -150620156 + L1MB3 LINE L1 6126 6179 -4 380 324 7 34 chrX 26355765 26355913 -150618227 - L2 LINE L2 -2 3311 3168 2346 107 0 0 chrX 26356254 26356564 -150617576 - AluSg SINE Alu 0 310 1 792 130 70 32 chrX 26356569 26356724 -150617416 - Tigger2 DNA MER2_type -65 2653 2488 2075 113 10 19 chrX 26356724 26357034 -150617106 + AluSx SINE Alu 6 312 0 792 130 70 32 chrX 26357034 26357063 -150617077 - Tigger2 DNA MER2_type -230 2488 2462 4017 117 56 55 chrX 26357117 26357869 -150616271 - Tigger2 DNA MER2_type -1964 754 2 2226 93 7 0 chrX 26358006 26358308 -150615832 + AluY SINE Alu 1 304 -7 275 310 84 45 chrX 26358939 26359094 -150615046 - MIR SINE MIR -18 244 84 250 298 98 71 chrX 26359320 26359360 -150614780 + L2 LINE L2 2713 2750 -564 2370 83 3 0 chrX 26359360 26359660 -150614480 + AluSp SINE Alu 1 301 -12 250 298 98 71 chrX 26359660 26359844 -150614296 + L2 LINE L2 2750 2943 -371 246 293 13 27 chrX 26359975 26360050 -150614090 + L2 LINE L2 3179 3252 -61 1529 170 85 51 chrX 26360079 26360432 -150613708 - MLT1A1 LTR MaLR 0 365 1 407 231 322 25 chrX 26360833 26361032 -150613108 - MIR SINE MIR -1 261 4 706 181 0 0 chrX 26361273 26361389 -150612751 + FLAM_A SINE Alu 1 116 -17 3779 195 117 24 chrX 26362214 26364185 -150609955 + L1M4b LINE L1 11 2182 -4777 1083 97 0 0 chrX 26364187 26364321 -150609819 + AluSq/x SINE Alu 2 135 -177 2377 97 3 0 chrX 26364321 26364630 -150609510 + AluSg SINE Alu 1 310 0 2353 97 3 3 chrX 26364674 26364982 -150609158 + AluSx SINE Alu 1 308 -4 3759 159 62 18 chrX 26365197 26366168 -150607972 + L1MB4 LINE L1 4978 5980 -200 1912 127 7 20 chrX 26367134 26367426 -150606714 + AluJb SINE Alu 1 288 -24 2279 103 0 3 chrX 26368411 26368712 -150605428 + AluSx SINE Alu 1 300 -12 2029 127 7 17 chrX 26368870 26369169 -150604971 - AluSx SINE Alu -16 296 1 1119 138 78 47 chrX 26369328 26369738 -150604402 - L1MB8 LINE L1 0 6178 5733 519 106 0 24 chrX 26369806 26369891 -150604249 - Alu SINE Alu -2 307 225 668 129 0 0 chrX 26369894 26369987 -150604153 + AluSq SINE Alu 141 233 -80 1500 109 0 41 chrX 26369987 26370207 -150603933 - AluSg SINE Alu -99 211 1 27 49 0 0 chrX 26370362 26370403 -150603737 + AT_rich Low_complexity Low_complexity 1 41 0 2178 108 3 0 chrX 26370562 26370849 -150603291 + AluSq SINE Alu 4 291 -22 25 0 0 0 chrX 26370849 26370874 -150603266 + AT_rich Low_complexity Low_complexity 1 25 0 748 284 70 8 chrX 26371046 26371289 -150602851 + MIR SINE MIR 5 262 0 368 163 353 13 chrX 26371409 26371562 -150602578 + L1MC5 LINE L1 7721 7925 -36 1200 146 0 0 chrX 26371623 26371788 -150602352 - AluSc SINE Alu -144 165 1 2083 214 122 42 chrX 26371908 26372261 -150601879 + L1ME3 LINE L1 5367 5690 -472 1625 174 0 56 chrX 26372261 26372582 -150601558 + AluJb SINE Alu 1 303 -9 2083 214 122 42 chrX 26372582 26372660 -150601480 + L1ME3 LINE L1 5690 5760 -402 2085 104 38 0 chrX 26372660 26372949 -150601191 + AluSg SINE Alu 1 300 -10 2083 214 122 42 chrX 26372949 26373065 -150601075 + L1ME3 LINE L1 5760 5865 -297 2373 93 3 0 chrX 26373065 26373365 -150600775 + AluSx SINE Alu 1 301 -11 2083 214 122 42 chrX 26373365 26373550 -150600590 + L1ME3 LINE L1 5865 6160 -2 2231 146 92 9 chrX 26373627 26374071 -150600069 + Charlie1b DNA MER1_type 37 517 -6 228 240 106 123 chrX 26374622 26374765 -150599375 - MIR3 SINE MIR -13 195 54 1989 140 13 3 chrX 26374765 26375072 -150599068 + AluSx SINE Alu 1 310 -2 228 240 106 123 chrX 26375072 26375107 -150599033 - MIR3 SINE MIR -154 54 20 743 140 281 6 chrX 26375972 26376143 -150597997 + MER20 DNA MER1_type 2 219 0 393 105 0 18 chrX 26376387 26376444 -150597696 + MER46A DNA MER2_type 1 56 -180 2373 73 0 16 chrX 26376445 26376748 -150597392 - AluSx SINE Alu -14 298 1 484 160 101 42 chrX 26376752 26376871 -150597269 + MER46A DNA MER2_type 104 229 -7 2300 103 3 0 chrX 26377031 26377331 -150596809 + AluSq SINE Alu 3 303 -10 1943 82 8 0 chrX 26377862 26378105 -150596035 + AluSp SINE Alu 1 245 -68 682 279 75 9 chrX 26378106 26378332 -150595808 - Tigger8 DNA MER2_type -378 288 48 1390 191 35 17 chrX 26378337 26378625 -150595515 + AluJo SINE Alu 1 293 -19 1258 163 183 44 chrX 26378640 26378978 -150595162 + MER58D DNA MER1_type 2 386 0 329 208 42 73 chrX 26379724 26379820 -150594320 + MIR3 SINE MIR 89 181 -27 273 207 69 0 chrX 26379917 26379975 -150594165 - L2 LINE L2 -8 3264 3203 241 169 0 92 chrX 26380378 26380443 -150593697 - MIR3 SINE MIR -15 193 135 297 228 0 0 chrX 26380469 26380526 -150593614 + L2 LINE L2 3256 3312 -1 1428 162 60 36 chrX 26381298 26381600 -150592540 + AluJb SINE Alu 1 309 -3 678 221 16 79 chrX 26382399 26382589 -150591551 + MER5B DNA MER1_type 1 178 0 1812 77 57 0 chrX 26383260 26383508 -150590632 + AluY SINE Alu 40 301 -10 24 0 0 0 chrX 26384993 26385017 -150589123 + GC_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 26385212 26385243 -150588897 + GC_rich Low_complexity Low_complexity 1 31 0 369 109 0 0 chrX 26386086 26386141 -150587999 + (CGG)n Simple_repeat Simple_repeat 2 56 0 239 273 13 0 chrX 26386214 26386291 -150587849 + C-rich Low_complexity Low_complexity 6 83 0 5831 159 62 12 chrX 26387965 26388743 -150585397 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 26388743 26388763 -150585377 + (TA)n Simple_repeat Simple_repeat 2 21 0 5831 159 62 12 chrX 26388763 26389973 -150584167 + L1MB4 LINE L1 4821 6180 0 570 216 108 0 chrX 26391102 26391241 -150582899 + MER69 DNA AcHobo 1910 2063 -463 2205 126 0 0 chrX 26392538 26392848 -150581292 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 26393216 26393262 -150580878 + (TG)n Simple_repeat Simple_repeat 2 47 0 2195 92 7 23 chrX 26393267 26393571 -150580569 - AluSx SINE Alu -13 299 1 371 148 78 87 chrX 26394672 26394707 -150579433 + MER69 DNA AcHobo 2054 2088 -438 2376 73 0 13 chrX 26394707 26395010 -150579130 + AluSg SINE Alu 1 299 -11 371 148 78 87 chrX 26395010 26395073 -150579067 + MER69 DNA AcHobo 2088 2153 -373 2123 85 16 41 chrX 26395073 26395392 -150578748 + AluY SINE Alu 1 311 0 371 148 78 87 chrX 26395392 26395407 -150578733 + MER69 DNA AcHobo 2153 2167 -359 897 171 70 0 chrX 26395413 26395600 -150578540 + MER69 DNA AcHobo 2327 2526 0 1141 177 129 16 chrX 26395958 26396206 -150577934 + AluSg SINE Alu 21 296 -14 2249 106 0 25 chrX 26396210 26396531 -150577609 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 26396733 26396761 -150577379 + AT_rich Low_complexity Low_complexity 1 28 0 2353 98 0 3 chrX 26397707 26398014 -150576126 + AluSq SINE Alu 1 306 -7 2490 143 96 67 chrX 26398014 26398375 -150575765 + L1MCa LINE L1 1887 2236 -4320 2001 152 0 10 chrX 26398375 26398685 -150575455 + AluJb SINE Alu 1 307 -5 2490 143 96 67 chrX 26398685 26398975 -150575165 + L1MCa LINE L1 2236 2605 -3951 1025 171 0 0 chrX 26398975 26399151 -150574989 + AluJb SINE Alu 134 309 -3 1854 81 100 8 chrX 26399189 26399471 -150574669 - AluSx SINE Alu 0 306 1 251 206 88 15 chrX 26399497 26399565 -150574575 - MIR SINE MIR 0 262 190 685 269 58 24 chrX 26399568 26399776 -150574364 - MIR SINE MIR -45 217 3 183 130 0 87 chrX 26399802 26399848 -150574292 + MIR SINE MIR 205 246 -16 615 179 95 48 chrX 26399875 26400043 -150574097 - MER104 DNA MER2_type 0 180 5 1001 248 232 3 chrX 26400083 26400402 -150573738 + L2 LINE L2 2203 2594 -720 1003 211 65 80 chrX 26400403 26400802 -150573338 + MLT1J1 LTR MaLR 2 394 -52 2403 85 0 0 chrX 26401075 26401369 -150572771 + AluSg SINE Alu 1 294 -16 2768 172 17 2 chrX 26401375 26401905 -150572235 + L1PA10 LINE L1 4826 5363 -783 942 166 0 0 chrX 26401919 26402070 -150572070 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 26402072 26402099 -150572041 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 615 60 0 0 chrX 26402100 26402184 -150571956 + L1PA15 LINE L1 5357 5440 -725 976 76 0 0 chrX 26402236 26402354 -150571786 + AluSg SINE Alu 1 118 -192 4815 130 22 11 chrX 26402354 26402377 -150571763 + L1PA15 LINE L1 5415 5436 -729 2384 72 0 33 chrX 26402377 26402684 -150571456 + AluSg SINE Alu 1 297 -13 4815 130 22 11 chrX 26402684 26403399 -150570741 + L1PA15 LINE L1 5436 6161 -4 560 271 79 11 chrX 26403496 26403673 -150570467 + REP3 LTR ERV 1 189 -373 458 214 117 28 chrX 26404062 26404207 -150569933 + L2 LINE L2 2807 2964 -349 852 243 6 0 chrX 26404812 26404985 -150569155 - FAM SINE Alu 0 175 2 2259 104 13 3 chrX 26404999 26405308 -150568832 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26405318 26405342 -150568798 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2177 109 3 7 chrX 26405342 26405625 -150568515 - AluSx SINE Alu -28 284 1 2126 131 0 0 chrX 26405643 26405941 -150568199 - AluSx SINE Alu -14 298 1 2405 82 7 7 chrX 26405998 26406303 -150567837 - AluSp SINE Alu -8 305 1 456 201 8 44 chrX 26406307 26406458 -150567682 - L1ME3 LINE L1 0 6162 6017 1211 233 124 79 chrX 26406458 26407442 -150566698 - L1MC5 LINE L1 -786 7175 6163 2188 99 0 7 chrX 26407461 26407744 -150566396 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26407744 26407769 -150566371 + (TA)n Simple_repeat Simple_repeat 2 27 0 1714 168 106 117 chrX 26407808 26408337 -150565803 - MLT1F1 LTR MaLR -2 565 18 547 309 60 73 chrX 26408401 26408846 -150565294 - L1MC4a LINE L1 -1761 6047 5609 2290 88 3 3 chrX 26408846 26409141 -150564999 - AluSg SINE Alu -15 295 1 547 309 60 73 chrX 26409141 26409241 -150564899 - L1MC4a LINE L1 -2199 5609 5509 729 80 0 0 chrX 26409286 26409374 -150564766 - AluSg SINE Alu -221 89 2 479 231 8 30 chrX 26409427 26409561 -150564579 - L1ME3 LINE L1 0 6162 6032 2074 114 0 0 chrX 26409618 26409898 -150564242 - AluSx SINE Alu -32 280 1 884 335 58 30 chrX 26409898 26410642 -150563498 - L1MC4a LINE L1 -881 6927 6163 2247 79 0 10 chrX 26410657 26410948 -150563192 - AluSx SINE Alu -24 288 1 1596 171 103 109 chrX 26410978 26411513 -150562627 - MLT1F1 LTR MaLR 0 595 18 602 300 66 70 chrX 26411577 26412178 -150561962 - L1MC4a LINE L1 -313 5808 5455 1854 110 0 4 chrX 26412585 26412831 -150561309 - AluSg SINE Alu -65 245 1 1795 139 10 42 chrX 26412832 26413165 -150560975 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26413381 26413412 -150560728 + AT_rich Low_complexity Low_complexity 1 31 0 2345 71 3 10 chrX 26413412 26413708 -150560432 - AluSp SINE Alu -19 294 1 2036 97 0 72 chrX 26413929 26414250 -150559890 + AluSg1 SINE Alu 1 298 -11 968 121 7 7 chrX 26414257 26414406 -150559734 - FRAM SINE Alu -6 170 22 2136 105 14 0 chrX 26414453 26414739 -150559401 + AluSg SINE Alu 2 291 -19 312 298 118 52 chrX 26414749 26415038 -150559102 + L1ME LINE L1 5533 5840 -281 311 221 74 0 chrX 26415150 26415264 -150558876 + MLT1J LTR MaLR 104 288 -327 1270 244 98 15 chrX 26415450 26415786 -150558354 + LTR16A LTR ERVL 87 450 0 2007 113 61 0 chrX 26415926 26416219 -150557921 + AluSx SINE Alu 1 311 -1 599 249 131 22 chrX 26416230 26416685 -150557455 + L1ME4a LINE L1 5010 5517 -657 384 294 56 73 chrX 26416804 26416930 -150557210 + L1ME4a LINE L1 5791 5918 -203 2261 84 0 0 chrX 26416930 26417226 -150556914 - AluSp SINE Alu -17 296 1 384 294 56 73 chrX 26417226 26417448 -150556692 + L1ME4a LINE L1 5918 6120 -1 749 181 0 0 chrX 26417461 26417577 -150556563 - FLAM_C SINE Alu -25 118 3 2098 89 7 0 chrX 26417605 26417917 -150556223 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 26418030 26418074 -150556066 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3537 206 47 27 chrX 26418187 26418537 -150555603 - L1ME2 LINE L1 -16 6148 5807 1921 198 116 34 chrX 26418537 26418859 -150555281 + MER34 LTR ERV1 1 380 -162 2116 103 0 29 chrX 26418859 26419169 -150554971 - AluSq SINE Alu -12 301 1 1921 198 116 34 chrX 26419169 26419347 -150554793 + MER34 LTR ERV1 380 542 0 3537 206 47 27 chrX 26419347 26419474 -150554666 - L1ME2 LINE L1 -357 5807 5684 2168 101 0 31 chrX 26419474 26419792 -150554348 - AluSg SINE Alu 0 310 3 3537 206 47 27 chrX 26419792 26420246 -150553894 - L1ME2 LINE L1 -480 5684 5198 198 0 0 0 chrX 26420251 26420273 -150553867 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2227 91 7 0 chrX 26420664 26420972 -150553168 - AluSx SINE Alu -2 310 1 1997 103 21 0 chrX 26424096 26424386 -150549754 + AluSx SINE Alu 1 296 -16 1914 77 48 11 chrX 26425106 26425402 -150548738 - AluY SINE Alu 0 306 1 2256 94 0 0 chrX 26425471 26425778 -150548362 - AluSx SINE Alu -1 311 5 2205 99 0 10 chrX 26425976 26426288 -150547852 + AluSq SINE Alu 1 309 -4 2344 60 40 0 chrX 26426333 26426633 -150547507 + AluSp SINE Alu 1 312 -1 2144 91 0 3 chrX 26427022 26427336 -150546804 + AluSq SINE Alu 1 313 0 2439 56 0 3 chrX 26427908 26428212 -150545928 + AluSp SINE Alu 1 303 -10 2170 108 14 0 chrX 26428592 26428889 -150545251 + AluSx SINE Alu 1 301 -11 2492 47 0 0 chrX 26428974 26429272 -150544868 + AluY SINE Alu 1 298 -13 1951 93 13 54 chrX 26429598 26429911 -150544229 + AluSx SINE Alu 1 300 -12 2479 77 0 0 chrX 26430054 26430387 -150543753 - AluSp SINE Alu 0 333 1 1086 60 0 0 chrX 26430630 26430763 -150543377 + AluSq/x SINE Alu 1 133 -179 1798 118 4 0 chrX 26430797 26431059 -150543081 + AluSg SINE Alu 1 263 -47 237 265 98 49 chrX 26432327 26432429 -150541711 - MIR SINE MIR -76 186 80 2367 78 10 0 chrX 26432459 26432766 -150541374 - AluSx SINE Alu -2 310 1 211 262 0 0 chrX 26433015 26433057 -150541083 - MIR SINE MIR -200 62 21 2244 109 0 0 chrX 26433218 26433530 -150540610 - AluSx SINE Alu 0 312 1 2308 67 0 3 chrX 26433732 26434029 -150540111 - AluY SINE Alu -14 297 2 854 143 0 0 chrX 26434793 26434919 -150539221 - AluSq/x SINE Alu -187 126 1 2190 75 0 0 chrX 26434980 26435285 -150538855 - AluSg SINE Alu 0 305 1 2108 108 0 16 chrX 26435345 26435661 -150538479 - AluSx SINE Alu -1 311 1 2359 86 0 0 chrX 26436332 26436636 -150537504 + AluSx SINE Alu 1 304 -8 2327 172 21 28 chrX 26437095 26437560 -150536580 + L1MB5 LINE L1 5713 6174 0 2102 117 3 3 chrX 26437567 26437876 -150536264 + AluSx SINE Alu 1 309 -3 1658 143 0 39 chrX 26437936 26438222 -150535918 - AluJb SINE Alu -20 292 18 834 82 65 80 chrX 26438222 26438405 -150535735 - L1MA2 LINE L1 -177 6127 5938 825 127 8 8 chrX 26438416 26438550 -150535590 - AluJo SINE Alu -178 134 1 2222 84 3 0 chrX 26438562 26438869 -150535271 - AluSx SINE Alu 0 308 1 1104 111 32 5 chrX 26440174 26440363 -150533777 - AluSg/x SINE Alu 0 312 119 2022 98 0 58 chrX 26440364 26440692 -150533448 - AluSq SINE Alu -4 309 1 270 0 0 0 chrX 26440699 26440729 -150533411 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2106 89 7 0 chrX 26440731 26441011 -150533129 - AluSp SINE Alu -31 282 1 2448 58 3 3 chrX 26441042 26441351 -150532789 + AluSp SINE Alu 1 309 -4 1785 132 14 0 chrX 26441352 26441632 -150532508 + AluSx SINE Alu 16 299 -13 255 224 0 0 chrX 26441659 26441708 -150532432 + MER69 DNA AcHobo 21 69 -2457 753 196 367 0 chrX 26441818 26442058 -150532082 + MER69 DNA AcHobo 330 657 -1869 1762 153 3 26 chrX 26442065 26442378 -150531762 + AluJo SINE Alu 7 312 0 3375 175 46 70 chrX 26442463 26442991 -150531149 + MER69 DNA AcHobo 1654 2193 -333 2263 92 0 13 chrX 26442991 26443305 -150530835 - AluSx SINE Alu -2 310 1 3375 175 46 70 chrX 26443305 26443597 -150530543 + MER69 DNA AcHobo 2193 2453 -73 968 110 0 22 chrX 26443597 26443733 -150530407 - FLAM_C SINE Alu 0 133 1 3375 175 46 70 chrX 26443733 26443804 -150530336 + MER69 DNA AcHobo 2453 2524 -2 247 288 0 27 chrX 26443804 26443877 -150530263 + (CATG)n Simple_repeat Simple_repeat 2 72 0 1664 93 86 32 chrX 26444834 26445113 -150529027 + AluSx SINE Alu 1 294 -18 254 220 0 0 chrX 26445232 26445291 -150528849 - MLT1H LTR MaLR -4 545 487 1745 138 7 7 chrX 26445292 26445581 -150528559 - AluJo SINE Alu -11 301 13 874 110 0 8 chrX 26445581 26445708 -150528432 - AluJo SINE Alu -174 138 13 896 249 185 25 chrX 26445708 26446102 -150528038 - MLT1H LTR MaLR -53 496 40 2255 83 7 0 chrX 26446153 26446442 -150527698 - AluSc SINE Alu -18 291 1 478 81 68 0 chrX 26446456 26446530 -150527610 - L1MB3 LINE L1 -9 6174 6096 1523 149 0 4 chrX 26446557 26446798 -150527342 - AluJo SINE Alu -72 240 1 1356 193 15 45 chrX 26446812 26446940 -150527200 - MER21A LTR ERV1 -472 459 342 2337 88 3 0 chrX 26446940 26447246 -150526894 + AluSx SINE Alu 1 307 -5 1356 193 15 45 chrX 26447246 26447382 -150526758 - MER21A LTR ERV1 -589 342 203 2558 150 17 37 chrX 26447382 26447691 -150526449 - MER65C LTR ERV1 0 461 162 2132 112 3 6 chrX 26447691 26448005 -150526135 + AluSq SINE Alu 1 313 0 2558 150 17 37 chrX 26448005 26448155 -150525985 - MER65C LTR ERV1 -299 162 11 315 130 0 37 chrX 26448155 26448209 -150525931 + (TTTTC)n Simple_repeat Simple_repeat 4 55 0 744 88 10 78 chrX 26448211 26448403 -150525737 + (TTTCC)n Simple_repeat Simple_repeat 1 179 0 186 255 0 0 chrX 26448403 26448454 -150525686 + CT-rich Low_complexity Low_complexity 2 52 0 1518 157 50 4 chrX 26448459 26448721 -150525419 - AluJb SINE Alu -38 274 1 311 111 0 111 chrX 26448741 26448771 -150525369 - MER39 LTR ERV1 -371 336 315 2180 97 3 3 chrX 26448771 26449071 -150525069 - AluSc SINE Alu -9 300 1 311 111 0 111 chrX 26449071 26449103 -150525037 - MER39 LTR ERV1 -392 315 281 294 26 0 0 chrX 26449102 26449140 -150525000 - MSTB1 LTR MaLR -45 387 350 * 1612 151 198 22 chrX 26449178 26449536 -150524604 + MSTA LTR MaLR 4 424 -4 461 117 115 81 chrX 26449547 26449657 -150524483 - MER21A LTR ERV1 -541 166 70 2046 118 0 7 chrX 26449725 26450054 -150524086 - AluSx SINE Alu 0 327 1 385 139 0 28 chrX 26450100 26450172 -150523968 - MER21A LTR ERV1 -861 70 1 2090 95 3 41 chrX 26450241 26450557 -150523583 + AluSp SINE Alu 1 304 -9 3294 122 51 42 chrX 26450560 26450766 -150523374 + MER21B LTR ERV1 308 511 -352 2257 55 28 3 chrX 26450766 26451055 -150523085 - AluY SINE Alu -15 296 1 3294 122 51 42 chrX 26451055 26451398 -150522742 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 26451418 26451434 -150522706 + A-rich Low_complexity Low_complexity 1 16 -32 2110 109 6 10 chrX 26451434 26451747 -150522393 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 26451747 26451778 -150522362 + A-rich Low_complexity Low_complexity 15 48 0 2263 102 0 0 chrX 26452201 26452505 -150521635 + AluSx SINE Alu 1 304 -8 546 249 38 130 chrX 26452583 26453243 -150520897 - LTR38B LTR ERV1 0 610 12 1648 161 7 0 chrX 26453243 26453517 -150520623 - AluJb SINE Alu -36 276 1 1728 133 20 20 chrX 26453568 26453868 -150520272 + AluJo SINE Alu 1 300 -12 2125 102 0 3 chrX 26453941 26454262 -150519878 + AluSx SINE Alu 1 320 0 2345 60 6 19 chrX 26454263 26454578 -150519562 + AluY SINE Alu 1 311 0 1965 129 26 19 chrX 26454585 26454687 -150519453 + AluJb SINE Alu 1 101 -211 2021 100 106 32 chrX 26454687 26455026 -150519114 + THE1B LTR MaLR 1 364 0 1965 129 26 19 chrX 26455026 26455233 -150518907 + AluJb SINE Alu 101 312 0 2385 69 3 7 chrX 26455663 26455968 -150518172 - AluSp SINE Alu -9 304 1 1122 146 0 0 chrX 26456171 26456349 -150517791 - AluSg/x SINE Alu 0 312 135 2168 98 0 3 chrX 26456470 26456766 -150517374 + AluSx SINE Alu 1 295 -17 4457 123 10 30 chrX 26456849 26457270 -150516870 + L1MC1 LINE L1 5630 6033 -300 1873 156 0 6 chrX 26457270 26457584 -150516556 + AluJb SINE Alu 1 312 0 4457 123 10 30 chrX 26457584 26457869 -150516271 + L1MC1 LINE L1 6033 6322 -11 2009 92 10 44 chrX 26457870 26458014 -150516126 + AluSx SINE Alu 1 131 -181 2280 92 3 0 chrX 26458014 26458320 -150515820 + AluSp SINE Alu 1 307 -6 2009 92 10 44 chrX 26458320 26458469 -150515671 + AluSx SINE Alu 131 284 -28 180 0 0 0 chrX 26458469 26458489 -150515651 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 258 32 0 0 chrX 26458488 26458519 -150515621 + (TG)n Simple_repeat Simple_repeat 2 32 0 2015 138 0 19 chrX 26458526 26458844 -150515296 + AluSx SINE Alu 1 312 0 1934 94 65 0 chrX 26458854 26459129 -150515011 + AluSp SINE Alu 1 293 -20 28 29 0 0 chrX 26459129 26459164 -150514976 + AT_rich Low_complexity Low_complexity 1 35 0 1743 174 7 3 chrX 26459176 26459509 -150514631 + AluJo SINE Alu 1 334 0 2240 99 13 0 chrX 26459556 26459860 -150514280 + AluSx SINE Alu 1 308 -4 496 246 82 44 chrX 26459954 26460137 -150514003 + MLT1H LTR MaLR 102 291 -258 377 216 108 22 chrX 26460164 26460285 -150513855 + MLT1H LTR MaLR 305 545 -4 33 20 0 20 chrX 26460309 26460327 -150513813 + AT_rich Low_complexity Low_complexity 1 18 -32 2403 74 3 0 chrX 26460327 26460638 -150513502 + AluSp SINE Alu 2 313 0 33 20 0 20 chrX 26460638 26460670 -150513470 + AT_rich Low_complexity Low_complexity 18 50 0 298 141 141 113 chrX 26460670 26460722 -150513418 + L1MC5 LINE L1 7786 7835 -126 1624 132 71 25 chrX 26460722 26461002 -150513138 - AluJo SINE Alu -19 293 1 298 141 141 113 chrX 26461002 26461091 -150513049 + L1MC5 LINE L1 7835 7931 -30 2399 41 17 0 chrX 26461226 26461521 -150512619 - AluY SINE Alu -11 300 1 277 139 47 12 chrX 26462569 26462655 -150511485 + GA-rich Low_complexity Low_complexity 2 90 0 2495 136 66 11 chrX 26463583 26464025 -150510115 - L1MC1 LINE L1 0 6333 5868 2205 109 0 0 chrX 26464665 26464968 -150509172 - AluSx SINE Alu -9 303 1 1871 135 13 13 chrX 26464993 26465305 -150508835 - AluJo SINE Alu 0 312 1 204 125 0 0 chrX 26465313 26465345 -150508795 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2497 56 3 0 chrX 26465352 26465658 -150508482 - AluSp SINE Alu -5 308 2 260 291 35 0 chrX 26465684 26465770 -150508370 - AluYb8 SINE Alu -101 207 119 2313 89 0 0 chrX 26466107 26466409 -150507731 - AluSx SINE Alu -2 310 9 606 227 179 4 chrX 26466413 26466608 -150507532 - HERVL LTR ERVL -2301 3184 2951 1331 130 5 5 chrX 26466608 26466815 -150507325 - AluJb SINE Alu -22 290 84 2278 93 0 0 chrX 26466841 26467152 -150506988 - AluY SINE Alu 0 311 1 1863 132 27 3 chrX 26467366 26467661 -150506479 + AluJo SINE Alu 1 302 -10 968 132 20 0 chrX 26467661 26467813 -150506327 - MER68 LTR ERV1 -407 155 1 2171 96 17 0 chrX 26467954 26468247 -150505893 - AluSx SINE Alu -14 298 1 2178 91 0 0 chrX 26468291 26468620 -150505520 + AluSq SINE Alu 1 329 0 818 214 128 13 chrX 26468760 26468994 -150505146 + L1ME3A LINE L1 5890 6150 -20 1770 131 44 14 chrX 26469290 26469587 -150504553 + AluJo SINE Alu 1 306 -6 2306 97 3 0 chrX 26469587 26469896 -150504244 + AluSx SINE Alu 1 310 -2 593 185 179 0 chrX 26470220 26470371 -150503769 - MER5A DNA MER1_type -8 181 4 1641 142 44 41 chrX 26470603 26470898 -150503242 - AluJo SINE Alu -14 298 3 1749 123 33 14 chrX 26471265 26471399 -150502741 + AluSq SINE Alu 3 133 -170 2177 115 0 6 chrX 26471399 26471712 -150502428 + AluSx SINE Alu 1 311 -1 1749 123 33 14 chrX 26471712 26471873 -150502267 + AluSq SINE Alu 133 303 0 1918 146 8 35 chrX 26472010 26472386 -150501754 - pTR5 LTR ERV1 -1331 1107 742 351 271 135 23 chrX 26472398 26472531 -150501609 - MLT1J LTR MaLR -331 180 33 1533 182 111 14 chrX 26472619 26472988 -150501152 + L1M4 LINE L1 681 1085 -5457 406 71 98 107 chrX 26472992 26473068 -150501072 + L1MB8 LINE L1 6068 6144 -34 2027 122 3 0 chrX 26473068 26473372 -150500768 - AluSx SINE Alu -7 305 1 406 71 98 107 chrX 26473372 26473407 -150500733 + L1MB8 LINE L1 6144 6178 0 2321 79 3 9 chrX 26473420 26473735 -150500405 + AluSq SINE Alu 1 313 0 655 150 0 10 chrX 26473747 26473847 -150500293 + AluJb SINE Alu 37 135 -177 1937 132 3 0 chrX 26473847 26474135 -150500005 + AluSx SINE Alu 1 289 -23 331 245 21 32 chrX 26474147 26474241 -150499899 + L1ME1 LINE L1 5876 5968 -198 604 215 0 0 chrX 26474241 26474348 -150499792 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 26474377 26474405 -150499735 + AT_rich Low_complexity Low_complexity 1 28 0 363 23 0 0 chrX 26474735 26474779 -150499361 + (CA)n Simple_repeat Simple_repeat 2 45 0 2120 110 0 0 chrX 26475593 26475885 -150498255 + AluSx SINE Alu 1 292 -20 1098 114 11 34 chrX 26475934 26476093 -150498047 + AluSg/x SINE Alu 139 295 -15 2288 93 3 0 chrX 26476093 26476404 -150497736 + AluSp SINE Alu 1 312 -1 1098 114 11 34 chrX 26476404 26476419 -150497721 + AluSg/x SINE Alu 295 309 -1 2074 133 12 3 chrX 26476422 26476754 -150497386 - L1MB3 LINE L1 -31 6152 5818 1250 118 11 0 chrX 26476790 26476968 -150497172 + AluJb SINE Alu 121 300 -12 398 128 139 35 chrX 26476969 26477055 -150497085 - L1MB3 LINE L1 -356 5824 5730 2000 128 20 0 chrX 26477068 26477365 -150496775 - AluSx SINE Alu -8 304 2 366 317 60 27 chrX 26478197 26478380 -150495760 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 26478405 26478460 -150495680 + polypurine Low_complexity Low_complexity 3 57 0 263 308 35 49 chrX 26478464 26478558 -150495582 + L1M4 LINE L1 3520 3613 -2533 2091 97 33 3 chrX 26478558 26478858 -150495282 + AluSg SINE Alu 1 309 -1 263 308 35 49 chrX 26478858 26478906 -150495234 + L1M4 LINE L1 3613 3660 -2486 746 67 0 0 chrX 26478910 26479000 -150495140 + 5S rRNA rRNA 1 90 -31 552 293 26 4 chrX 26479000 26479229 -150494911 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 26479255 26479303 -150494837 + MIR SINE MIR 45 93 -115 260 280 56 56 chrX 26479322 26479447 -150494693 + MIR3 SINE MIR 47 171 -37 1030 192 50 52 chrX 26479672 26479723 -150494417 + L1MC5 LINE L1 7256 7306 -655 1731 66 70 4 chrX 26479723 26479965 -150494175 + AluY SINE Alu 37 294 -17 1030 192 50 52 chrX 26479965 26479989 -150494151 + L1MC5 LINE L1 7306 7329 -632 1020 144 4 144 chrX 26479989 26480059 -150494081 - MER3 DNA MER1_type 0 209 131 1849 98 17 57 chrX 26480059 26480207 -150493933 + AluSx SINE Alu 1 133 -179 2220 91 0 7 chrX 26480207 26480505 -150493635 + AluSp SINE Alu 1 296 -17 1849 98 17 57 chrX 26480505 26480652 -150493488 + AluSx SINE Alu 133 284 -28 1020 144 4 144 chrX 26480652 26480824 -150493316 - MER3 DNA MER1_type -78 131 1 1030 192 50 52 chrX 26480824 26481090 -150493050 + L1MC5 LINE L1 7329 7597 -364 1102 96 0 0 chrX 26481094 26481240 -150492900 + AluSx SINE Alu 1 146 -167 4045 61 32 104 chrX 26481240 26481396 -150492744 - LTR66 LTR ERVL 0 610 444 459 0 0 0 chrX 26481396 26481447 -150492693 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 4045 61 32 104 chrX 26481447 26481773 -150492367 - LTR66 LTR ERVL -166 444 184 2174 78 34 0 chrX 26481773 26482068 -150492072 - AluSc SINE Alu -1 308 4 4045 61 32 104 chrX 26482068 26482235 -150491905 - LTR66 LTR ERVL -426 184 7 2060 112 3 3 chrX 26482237 26482532 -150491608 + AluSq SINE Alu 3 297 -16 1229 101 0 6 chrX 26482556 26482725 -150491415 + AluSx SINE Alu 142 309 -3 874 212 50 44 chrX 26482732 26482958 -150491182 + L1MC5 LINE L1 7603 7833 -128 1854 130 33 3 chrX 26482958 26483257 -150490883 - AluJo SINE Alu -4 308 1 874 212 50 44 chrX 26483257 26483351 -150490789 + L1MC5 LINE L1 7833 7925 -36 1795 136 0 63 chrX 26483359 26483676 -150490464 + AluJb SINE Alu 1 297 -15 2144 111 0 3 chrX 26483866 26484173 -150489967 + AluSx SINE Alu 1 306 -6 193 293 93 13 chrX 26484229 26484304 -150489836 + L3 LINE CR1 1092 1172 -405 1058 261 54 23 chrX 26484523 26484914 -150489226 + LTR16A1 LTR ERVL 55 457 0 2039 87 26 29 chrX 26485269 26485579 -150488561 - AluSc SINE Alu 0 309 1 2210 75 7 10 chrX 26485584 26485879 -150488261 - AluSq SINE Alu -19 294 1 2106 96 0 0 chrX 26485887 26486169 -150487971 + AluSx SINE Alu 14 295 -17 1983 142 0 0 chrX 26486570 26486879 -150487261 + AluSx SINE Alu 1 309 -3 1381 214 87 77 chrX 26486904 26487305 -150486835 + MLT2D LTR ERVL 2 406 -8 2160 105 3 0 chrX 26488044 26488339 -150485801 - AluSx SINE Alu -16 296 1 304 273 107 101 chrX 26489196 26489504 -150484636 - L3 LINE CR1 -334 1243 934 252 333 82 18 chrX 26489502 26489721 -150484419 + L2 LINE L2 2269 2501 -813 * 181 174 217 0 chrX 26491334 26491380 -150482760 - MIR SINE MIR -66 142 87 5769 158 63 13 chrX 26491434 26492212 -150481928 + L1MB4 LINE L1 4083 4821 -1359 180 0 0 0 chrX 26492212 26492232 -150481908 + (TA)n Simple_repeat Simple_repeat 2 21 0 5769 158 63 13 chrX 26492232 26493442 -150480698 + L1MB4 LINE L1 4821 6180 0 557 216 108 0 chrX 26494571 26494710 -150479430 + MER69 DNA AcHobo 1910 2063 -463 2117 123 0 0 chrX 26496007 26496317 -150477823 + AluSg SINE Alu 1 310 0 414 0 0 0 chrX 26496685 26496731 -150477409 + (TG)n Simple_repeat Simple_repeat 2 47 0 2098 92 7 23 chrX 26496736 26497041 -150477099 - AluSx SINE Alu -12 300 1 353 148 78 87 chrX 26498142 26498177 -150475963 + MER69 DNA AcHobo 2054 2088 -438 2271 73 0 13 chrX 26498177 26498480 -150475660 + AluSg SINE Alu 1 299 -11 353 148 78 87 chrX 26498480 26498543 -150475597 + MER69 DNA AcHobo 2088 2153 -373 2019 85 16 41 chrX 26498543 26498862 -150475278 + AluY SINE Alu 1 311 0 353 148 78 87 chrX 26498862 26498877 -150475263 + MER69 DNA AcHobo 2153 2167 -359 880 171 70 0 chrX 26498883 26499070 -150475070 + MER69 DNA AcHobo 2327 2526 0 1059 177 129 16 chrX 26499428 26499676 -150474464 + AluSg SINE Alu 21 296 -14 2147 106 0 25 chrX 26499680 26500001 -150474139 + AluSq SINE Alu 1 313 0 28 0 0 0 chrX 26500203 26500231 -150473909 + AT_rich Low_complexity Low_complexity 1 28 0 2250 98 0 3 chrX 26501177 26501484 -150472656 + AluSq SINE Alu 1 306 -7 2403 143 96 67 chrX 26501484 26501845 -150472295 + L1MCa LINE L1 1887 2236 -4320 1898 152 0 10 chrX 26501845 26502155 -150471985 + AluJb SINE Alu 1 307 -5 2403 143 96 67 chrX 26502155 26502445 -150471695 + L1MCa LINE L1 2236 2605 -3951 970 171 0 0 chrX 26502445 26502621 -150471519 + AluJb SINE Alu 134 309 -3 1739 85 100 8 chrX 26502659 26502941 -150471199 - AluSx SINE Alu 0 306 1 259 206 88 15 chrX 26502967 26503035 -150471105 - MIR SINE MIR 0 262 190 708 269 58 24 chrX 26503038 26503246 -150470894 - MIR SINE MIR -45 217 3 188 130 0 87 chrX 26503272 26503318 -150470822 + MIR SINE MIR 205 246 -16 571 179 95 48 chrX 26503345 26503513 -150470627 - MER104 DNA MER2_type 0 180 5 1017 248 232 3 chrX 26503553 26503872 -150470268 + L2 LINE L2 2203 2594 -720 1006 213 65 80 chrX 26503873 26504272 -150469868 + MLT1J1 LTR MaLR 2 394 -52 2296 85 0 0 chrX 26504545 26504839 -150469301 + AluSg SINE Alu 1 294 -16 2718 172 17 2 chrX 26504845 26505375 -150468765 + L1PA10 LINE L1 4826 5363 -783 951 166 0 0 chrX 26505389 26505540 -150468600 + L1PA10 LINE L1 5998 6148 -20 210 37 0 0 chrX 26505542 26505569 -150468571 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 606 60 0 0 chrX 26505570 26505654 -150468486 + L1PA15 LINE L1 5357 5440 -725 935 76 0 0 chrX 26505706 26505824 -150468316 + AluSg SINE Alu 1 118 -192 4548 131 22 11 chrX 26505824 26505847 -150468293 + L1PA15 LINE L1 5415 5436 -729 2269 72 0 33 chrX 26505847 26506154 -150467986 + AluSg SINE Alu 1 297 -13 4548 131 22 11 chrX 26506154 26506871 -150467269 + L1PA15 LINE L1 5436 6163 -2 579 271 79 11 chrX 26506966 26507143 -150466997 + REP3 LTR ERV 1 189 -373 466 222 96 54 chrX 26507532 26507699 -150466441 + L2 LINE L2 2807 2980 -333 791 243 6 0 chrX 26508283 26508456 -150465684 - FAM SINE Alu 0 175 2 2107 110 13 3 chrX 26508470 26508779 -150465361 - AluSx SINE Alu 0 312 1 216 0 0 0 chrX 26508789 26508813 -150465327 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2086 105 3 7 chrX 26508813 26509096 -150465044 - AluSx SINE Alu -28 284 1 1954 141 3 0 chrX 26509106 26509411 -150464729 - AluSx SINE Alu -6 306 1 2257 82 7 10 chrX 26509468 26509771 -150464369 - AluSp SINE Alu -11 302 1 430 197 7 44 chrX 26509775 26509912 -150464228 - L1ME3 LINE L1 0 6162 6031 1145 234 124 79 chrX 26509926 26510910 -150463230 - L1MC5 LINE L1 -786 7175 6163 2083 99 0 7 chrX 26510929 26511212 -150462928 + AluSg SINE Alu 1 281 -29 185 0 40 0 chrX 26511212 26511237 -150462903 + (TA)n Simple_repeat Simple_repeat 2 27 0 1726 170 106 117 chrX 26511276 26511805 -150462335 - MLT1F1 LTR MaLR -2 565 18 472 311 60 73 chrX 26511869 26512314 -150461826 - L1MC4a LINE L1 -1761 6047 5609 2166 92 3 3 chrX 26512314 26512609 -150461531 - AluSg SINE Alu -15 295 1 472 311 60 73 chrX 26512609 26512709 -150461431 - L1MC4a LINE L1 -2199 5609 5509 698 80 0 0 chrX 26512754 26512842 -150461298 - AluSg SINE Alu -221 89 2 451 231 8 30 chrX 26512895 26513029 -150461111 - L1ME3 LINE L1 0 6162 6032 1976 114 0 0 chrX 26513086 26513366 -150460774 - AluSx SINE Alu -32 280 1 797 327 62 36 chrX 26513366 26514112 -150460028 - L1MC4a LINE L1 -881 6927 6163 2273 79 0 10 chrX 26514127 26514418 -150459722 - AluSx SINE Alu -24 288 1 1628 171 103 109 chrX 26514448 26514983 -150459157 - MLT1F1 LTR MaLR 0 595 18 564 303 65 68 chrX 26515047 26515648 -150458492 - L1MC4a LINE L1 -313 5808 5455 1850 114 0 4 chrX 26516055 26516301 -150457839 - AluSg SINE Alu -65 245 1 1809 139 10 42 chrX 26516302 26516635 -150457505 - AluSq SINE Alu 0 313 1 31 0 0 0 chrX 26516851 26516882 -150457258 + AT_rich Low_complexity Low_complexity 1 31 0 2374 71 3 10 chrX 26516882 26517178 -150456962 - AluSp SINE Alu -19 294 1 2060 97 0 72 chrX 26517399 26517720 -150456420 + AluSg1 SINE Alu 1 298 -11 975 120 7 7 chrX 26517725 26517875 -150456265 - FRAM SINE Alu -5 171 22 2157 105 14 0 chrX 26517922 26518208 -150455932 + AluSg SINE Alu 2 291 -19 300 279 100 38 chrX 26518218 26518507 -150455633 + L1MC/D LINE L1 5533 5840 -281 310 221 74 0 chrX 26518619 26518733 -150455407 + MLT1J LTR MaLR 104 288 -327 1238 247 98 15 chrX 26518919 26519255 -150454885 + LTR16A LTR ERVL 87 450 0 2107 116 61 0 chrX 26519395 26519688 -150454452 + AluSx SINE Alu 1 311 -1 647 247 131 22 chrX 26519695 26520150 -150453990 + L1ME4a LINE L1 5010 5517 -657 2387 84 0 0 chrX 26520395 26520691 -150453449 - AluSp SINE Alu -17 296 1 230 307 34 11 chrX 26520728 26520816 -150453324 + L1ME4a LINE L1 5938 6027 -94 32 75 0 0 chrX 26520858 26520925 -150453215 + AT_rich Low_complexity Low_complexity 1 67 0 743 181 0 0 chrX 26520925 26521041 -150453099 - FLAM_C SINE Alu -25 118 3 2238 86 7 0 chrX 26521069 26521381 -150452759 - AluSp SINE Alu 0 314 1 215 227 0 0 chrX 26521494 26521538 -150452602 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 3572 214 66 26 chrX 26521651 26522001 -150452139 - L1ME2 LINE L1 -16 6217 5882 1944 198 116 34 chrX 26522001 26522323 -150451817 + MER34 LTR ERV1 1 380 -162 2224 102 0 38 chrX 26522323 26522636 -150451504 - AluSq SINE Alu -12 301 1 1944 198 116 34 chrX 26522636 26522814 -150451326 + MER34 LTR ERV1 380 542 0 3572 214 66 26 chrX 26522814 26522941 -150451199 - L1ME2 LINE L1 -351 5882 5761 2280 104 0 31 chrX 26522941 26523259 -150450881 - AluSg SINE Alu 0 310 3 3572 214 66 26 chrX 26523259 26523718 -150450422 - L1ME2 LINE L1 -472 5761 5322 198 0 0 0 chrX 26523718 26523740 -150450400 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1967 131 3 3 chrX 26523743 26524025 -150450115 - AluSx SINE Alu -30 282 1 754 199 0 0 chrX 26524029 26524160 -150449980 - FLAM_C SINE Alu -2 131 1 3572 214 66 26 chrX 26524160 26524660 -150449480 - L1ME2 LINE L1 -914 5319 4709 2069 98 0 59 chrX 26524670 26524976 -150449164 + AluSg SINE Alu 1 288 -22 2213 117 0 3 chrX 26525099 26525406 -150448734 - AluSq SINE Alu -7 306 1 2366 34 41 31 chrX 26525435 26525729 -150448411 - AluY SINE Alu -14 297 1 10081 177 84 44 chrX 26525866 26525949 -150448191 + L1MDa LINE L1 16 94 -6446 2136 133 0 0 chrX 26525949 26526243 -150447897 - AluSx SINE Alu -15 297 4 10081 177 84 44 chrX 26526243 26528509 -150445631 + L1MDa LINE L1 94 2459 -4081 2126 109 0 26 chrX 26529287 26529599 -150444541 - AluSx SINE Alu -8 304 1 884 243 183 44 chrX 26529773 26529971 -150444169 - L1ME2 LINE L1 -1559 4656 4487 2640 30 0 3 chrX 26529971 26530266 -150443874 + AluY SINE Alu 1 294 -17 884 243 183 44 chrX 26530266 26530754 -150443386 - L1ME2 LINE L1 -1728 4487 3874 2242 213 25 45 chrX 26531092 26531341 -150442799 - L1ME2 LINE L1 -2824 3391 3138 761 159 0 16 chrX 26531341 26531467 -150442673 - FLAM_C SINE Alu -9 124 1 2242 213 25 45 chrX 26531467 26531515 -150442625 - L1ME2 LINE L1 -3077 3138 3091 966 182 0 29 chrX 26531515 26531685 -150442455 - FRAM SINE Alu -1 165 1 2242 213 25 45 chrX 26531685 26532076 -150442064 - L1ME2 LINE L1 -3124 3091 2716 2118 174 10 12 chrX 26532080 26532494 -150441646 - L1MA4 LINE L1 -3 6297 5885 2087 88 0 4 chrX 26532560 26532833 -150441307 - L1MA4 LINE L1 -426 5878 5607 1984 145 3 0 chrX 26532834 26533131 -150441009 - AluSq SINE Alu -15 298 1 2820 155 27 16 chrX 26533133 26533648 -150440492 - L1MA4 LINE L1 -781 5365 4845 802 119 24 16 chrX 26533648 26533774 -150440366 + FLAM_C SINE Alu 1 127 -16 27 0 0 0 chrX 26533774 26533801 -150440339 + AT_rich Low_complexity Low_complexity 1 27 0 740 136 0 0 chrX 26533808 26533926 -150440214 - L1MA4 LINE L1 -1287 4859 4742 793 225 7 0 chrX 26533928 26534110 -150440030 - FRAM SINE Alu 0 185 3 2877 233 56 74 chrX 26534121 26534549 -150439591 - L1ME2 LINE L1 -4305 2091 1657 2038 117 53 0 chrX 26534549 26534832 -150439308 - AluSg SINE Alu -12 298 1 2877 233 56 74 chrX 26534832 26535034 -150439106 - L1ME2 LINE L1 -4739 1657 1453 2177 118 0 3 chrX 26535034 26535330 -150438810 + AluSq SINE Alu 1 295 -18 2877 233 56 74 chrX 26535330 26535342 -150438798 - L1ME2 LINE L1 -4943 1453 1442 2168 130 0 0 chrX 26535342 26535649 -150438491 + AluSx SINE Alu 1 307 -5 2877 233 56 74 chrX 26535649 26535911 -150438229 - L1ME2 LINE L1 -4954 1442 1177 2292 107 3 3 chrX 26535911 26536219 -150437921 - AluSc SINE Alu -1 308 1 2877 233 56 74 chrX 26536219 26536377 -150437763 - L1ME2 LINE L1 -5219 1177 1018 2066 136 10 0 chrX 26536377 26536679 -150437461 - AluSx SINE Alu -7 305 1 2877 233 56 74 chrX 26536679 26536770 -150437370 - L1ME2 LINE L1 -5378 1018 956 2129 122 0 0 chrX 26536770 26537069 -150437071 - AluSx SINE Alu 0 303 5 2877 233 56 74 chrX 26537069 26537185 -150436955 - L1ME2 LINE L1 -5440 956 839 2250 105 0 0 chrX 26537193 26537499 -150436641 - AluSx SINE Alu 0 306 1 1440 159 4 4 chrX 26537522 26537755 -150436385 - AluJo SINE Alu -11 301 69 855 295 9 24 chrX 26537757 26538089 -150436051 - L1ME2 LINE L1 -5571 825 499 2246 108 0 13 chrX 26538135 26538271 -150435869 + AluSx SINE Alu 1 137 -175 2303 109 3 0 chrX 26538271 26538573 -150435567 + AluSp SINE Alu 1 303 -10 2246 108 0 13 chrX 26538573 26538741 -150435399 + AluSx SINE Alu 137 301 -11 23 33 0 0 chrX 26539362 26539392 -150434748 + AT_rich Low_complexity Low_complexity 1 30 0 3123 54 10 0 chrX 26539513 26539904 -150434236 - L1PA7 LINE L1 -2 6152 5758 2192 126 0 0 chrX 26539907 26540201 -150433939 - AluSg SINE Alu -16 294 1 1759 176 0 16 chrX 26540201 26540513 -150433627 - AluJo SINE Alu -4 308 2 3754 82 53 121 chrX 26541134 26541814 -150432326 + MER51A LTR ERV1 1 634 0 456 228 20 10 chrX 26541871 26541972 -150432168 + MIR SINE MIR 33 134 -128 801 168 58 0 chrX 26541986 26542141 -150431999 + MER5A DNA MER1_type 26 189 0 2185 87 7 30 chrX 26542271 26542571 -150431569 + AluSq SINE Alu 1 293 -20 967 59 8 0 chrX 26542583 26542702 -150431438 + AluSq/x SINE Alu 1 120 -193 1397 171 0 17 chrX 26542870 26543109 -150431031 - AluJb SINE Alu -1 311 77 1970 134 3 36 chrX 26543923 26544228 -150429912 - AluSx SINE Alu -15 297 3 231 215 0 31 chrX 26544340 26544405 -150429735 - L1MC4 LINE L1 -1340 6702 6640 2443 97 0 0 chrX 26544407 26544717 -150429423 - AluSg SINE Alu 0 310 1 908 252 125 9 chrX 26544741 26545062 -150429078 - L1MC4 LINE L1 -1851 5957 5600 1263 121 0 0 chrX 26545064 26545230 -150428910 + AluSx SINE Alu 1 166 -146 1571 123 4 4 chrX 26545230 26545457 -150428683 + AluSg/x SINE Alu 70 296 -14 408 207 42 28 chrX 26545469 26545592 -150428548 - MLT1H LTR MaLR -374 181 69 294 289 44 0 chrX 26545606 26545696 -150428444 - L1MC4 LINE L1 -2192 5616 5523 21 82 0 0 chrX 26545864 26545913 -150428227 + AT_rich Low_complexity Low_complexity 1 49 0 1983 78 0 0 chrX 26546075 26546320 -150427820 - AluY SINE Alu -21 290 46 2068 91 4 0 chrX 26546320 26546584 -150427556 - AluSx SINE Alu -46 266 1 2302 91 3 7 chrX 26546970 26547267 -150426873 - AluSp SINE Alu -17 296 1 180 0 0 0 chrX 26547953 26547973 -150426167 + (TGG)n Simple_repeat Simple_repeat 2 21 0 377 256 22 0 chrX 26547993 26548083 -150426057 - MER5A DNA MER1_type -85 104 13 729 212 98 5 chrX 26548291 26548475 -150425665 + L1MC4a LINE L1 5255 5455 -2353 2147 165 42 12 chrX 26548481 26548912 -150425228 + LTR56 LTR ERV1 2 445 0 643 274 189 44 chrX 26548959 26549601 -150424539 + L1MC4a LINE L1 5614 6348 -1460 1974 127 7 16 chrX 26549610 26549918 -150424222 + AluJo SINE Alu 1 305 -7 235 152 0 0 chrX 26549918 26549951 -150424189 - LTR41 LTR ERVL -323 450 418 1009 195 80 73 chrX 26549973 26550122 -150424018 - LTR41 LTR ERVL -472 301 148 2177 132 3 0 chrX 26550122 26550426 -150423714 - AluSx SINE Alu -7 305 1 1009 195 80 73 chrX 26550426 26550563 -150423577 - LTR41 LTR ERVL -625 148 13 1295 197 10 65 chrX 26550571 26550881 -150423259 + L1MC5 LINE L1 6680 6972 -989 479 167 12 0 chrX 26550884 26550968 -150423172 - FLAM_A SINE Alu -33 109 25 194 0 39 0 chrX 26551006 26551032 -150423108 + (CAA)n Simple_repeat Simple_repeat 2 28 0 638 148 7 67 chrX 26551032 26551167 -150422973 + L1MC5 LINE L1 7022 7148 -813 1812 187 78 3 chrX 26551243 26551601 -150422539 + Charlie1a DNA MER1_type 1 385 -1070 675 177 0 32 chrX 26551602 26551726 -150422414 + FLAM_A SINE Alu 1 120 -22 4163 148 48 10 chrX 26551736 26552539 -150421601 + Charlie1a DNA MER1_type 377 1296 -159 878 148 44 0 chrX 26552543 26552678 -150421462 - FRAM SINE Alu -30 146 6 284 86 0 0 chrX 26552695 26552730 -150421410 - U2 snRNA snRNA -153 35 1 2043 99 60 0 chrX 26552740 26553024 -150421116 - AluSc SINE Alu -7 302 2 1909 149 94 18 chrX 26553028 26553498 -150420642 + Charlie1 DNA MER1_type 2161 2731 -30 2443 93 0 0 chrX 26553505 26553807 -150420333 - AluSx SINE Alu -8 304 3 960 182 19 0 chrX 26553829 26553988 -150420152 - AluJo SINE Alu -30 282 121 714 179 20 13 chrX 26553988 26554139 -150420001 + Charlie1 DNA MER1_type 2605 2756 -5 1223 207 22 59 chrX 26554140 26554497 -150419643 + L1MC5 LINE L1 7153 7496 -465 2390 43 0 14 chrX 26554588 26554765 -150419375 - AluSx SINE Alu 0 310 137 2090 118 0 40 chrX 26554765 26555086 -150419054 - AluSg SINE Alu -2 308 1 2390 43 0 14 chrX 26555086 26555214 -150418926 - AluSx SINE Alu -173 137 9 323 279 56 9 chrX 26555406 26555544 -150418596 + MIR SINE MIR 3 144 -64 1745 146 10 48 chrX 26556339 26556628 -150417512 - AluJo SINE Alu 0 411 136 2441 75 3 0 chrX 26556628 26556923 -150417217 - AluSp SINE Alu -17 296 1 1745 146 10 48 chrX 26556923 26557055 -150417085 - AluJo SINE Alu -275 136 1 481 304 41 0 chrX 26557132 26557303 -150416837 + MIR SINE MIR 14 191 -71 550 283 64 47 chrX 26557361 26557487 -150416653 + LTR33 LTR ERVL 2 124 -397 1579 142 0 47 chrX 26557487 26557741 -150416399 + AluJo SINE Alu 40 281 -31 550 283 64 47 chrX 26557741 26557938 -150416202 + LTR33 LTR ERVL 124 370 -151 2320 109 0 0 chrX 26558191 26558494 -150415646 + AluSx SINE Alu 1 303 -9 651 26 0 0 chrX 26558788 26558865 -150415275 + (TA)n Simple_repeat Simple_repeat 2 78 0 2329 79 0 0 chrX 26558868 26559146 -150414994 - AluSc SINE Alu -31 278 1 1266 139 74 19 chrX 26559156 26559371 -150414769 - AluJb SINE Alu -1 311 85 789 111 22 44 chrX 26559784 26559919 -150414221 - FLAM_C SINE Alu 0 143 12 1409 118 142 45 chrX 26560835 26561081 -150413059 - AluJb SINE Alu -19 293 24 1665 160 7 10 chrX 26561093 26561386 -150412754 - AluJo SINE Alu -4 308 17 1275 95 0 0 chrX 26561416 26561574 -150412566 - AluSc SINE Alu -13 296 139 2440 66 3 3 chrX 26561615 26561917 -150412223 + AluSc SINE Alu 1 302 -7 808 166 24 41 chrX 26561972 26562141 -150411999 + MLT1C LTR MaLR 19 184 -321 1107 145 12 0 chrX 26562166 26562338 -150411802 + FRAM SINE Alu 1 173 -3 835 211 188 5 chrX 26562394 26562602 -150411538 + MLT1C LTR MaLR 217 462 -5 232 255 85 57 chrX 26562802 26562908 -150411232 + MLT1K LTR MaLR 156 264 -324 1106 164 5 43 chrX 26563448 26563656 -150410484 - AluJo SINE Alu -26 286 87 481 209 16 107 chrX 26764063 26764136 -150210004 - L1ME1 LINE L1 -167 5999 6038 1176 181 14 14 chrX 26764136 26764351 -150209789 + MER58C DNA MER1_type 1 215 0 481 209 16 107 chrX 26764351 26764489 -150209651 - L1ME1 LINE L1 -127 6039 5890 1108 178 108 11 chrX 26764489 26764758 -150209382 - AluSx SINE Alu -6 296 2 2095 97 3 62 chrX 26764762 26764930 -150209210 - AluSx SINE Alu -11 301 159 2121 81 3 50 chrX 26764930 26765227 -150208913 - AluSg SINE Alu -13 297 15 2095 97 3 62 chrX 26765227 26765378 -150208762 - AluSx SINE Alu -153 159 1 1647 186 26 26 chrX 26765378 26765723 -150208417 - L1MD2 LINE L1 -399 5960 5616 1639 84 33 0 chrX 26767055 26767270 -150206870 + AluSg/x SINE Alu 85 306 -6 2212 114 3 0 chrX 26768505 26768804 -150205336 + AluSx SINE Alu 1 300 -12 494 248 136 10 chrX 26768812 26769018 -150205122 + LTR16C LTR ERVL 1 232 -259 248 0 31 0 chrX 26769018 26769050 -150205090 + (TG)n Simple_repeat Simple_repeat 1 33 0 2304 95 3 0 chrX 26769181 26769491 -150204649 - AluSx SINE Alu 0 311 1 2494 138 15 15 chrX 26769500 26769883 -150204257 + MER57A LTR ERV1 1 386 -17 2113 143 3 3 chrX 26769883 26770190 -150203950 - AluSx SINE Alu -5 307 1 2494 138 15 15 chrX 26770190 26770205 -150203935 + MER57A LTR ERV1 385 399 -4 2888 258 44 60 chrX 26770279 26771221 -150202919 + L1MEc LINE L1 39 995 -5401 2083 144 0 0 chrX 26771221 26771531 -150202609 - AluSx SINE Alu 0 312 1 2888 258 44 60 chrX 26771531 26771550 -150202590 + L1MEc LINE L1 995 1013 -5383 1893 122 0 3 chrX 26771550 26771836 -150202304 + L1MB3 LINE L1 5892 6176 -7 2888 258 44 60 chrX 26771836 26772342 -150201798 + L1MEc LINE L1 1013 1296 -5100 1800 146 71 0 chrX 26772342 26772609 -150201531 + AluSx SINE Alu 1 286 -26 2888 258 44 60 chrX 26772609 26773109 -150201031 + L1MEc LINE L1 1296 1803 -4593 916 73 0 0 chrX 26773123 26773233 -150200907 + AluSq/x SINE Alu 1 110 -202 2485 69 10 0 chrX 26773502 26773805 -150200335 - AluY SINE Alu -5 306 1 1038 101 0 7 chrX 26774479 26774618 -150199522 + AluSq/x SINE Alu 1 138 -175 1031 165 0 0 chrX 26774812 26774976 -150199164 + FAM SINE Alu 2 165 -10 635 167 28 94 chrX 26776030 26776210 -150197930 - L2 LINE L2 -5 3308 3141 2461 166 42 2 chrX 26776227 26776637 -150197503 - MSTB LTR MaLR 0 426 1 363 212 10 40 chrX 26776696 26776795 -150197345 + L2 LINE L2 1609 1704 -1610 2981 62 5 3 chrX 26776799 26777171 -150196969 + THE1C LTR MaLR 3 375 0 758 238 151 44 chrX 26777186 26777776 -150196364 + L2 LINE L2 2662 3309 -4 1880 84 11 0 chrX 26777861 26778148 -150195992 - L1PA10 LINE L1 0 6168 5905 1959 128 44 3 chrX 26778148 26778445 -150195695 - AluSx SINE Alu -3 309 1 1377 179 45 62 chrX 26779228 26779519 -150194621 + AluJo SINE Alu 1 286 -26 23 0 0 0 chrX 26780032 26780055 -150194085 + AT_rich Low_complexity Low_complexity 1 23 0 2282 106 3 0 chrX 26780059 26780360 -150193780 + AluSx SINE Alu 1 302 -10 234 0 0 0 chrX 26780783 26780809 -150193331 + (TTG)n Simple_repeat Simple_repeat 2 27 0 675 130 154 16 chrX 26781636 26781759 -150192381 + THE1C LTR MaLR 3 142 -233 703 220 17 106 chrX 26782279 26782358 -150191782 + LTR16C LTR ERVL 277 361 -130 2086 33 4 8 chrX 26782358 26782599 -150191541 - AluY SINE Alu -19 292 53 703 220 17 106 chrX 26782599 26782755 -150191385 + LTR16C LTR ERVL 361 491 0 337 88 12 50 chrX 26782846 26782926 -150191214 + (TCTCC)n Simple_repeat Simple_repeat 5 81 0 1930 126 0 25 chrX 26782927 26783212 -150190928 - AluSx SINE Alu -34 278 1 288 259 25 0 chrX 26783355 26783436 -150190704 + MER103 DNA DNA 32 114 -52 219 308 6 116 chrX 26783448 26783548 -150190592 - L3 LINE CR1 -219 1358 1283 2220 113 6 3 chrX 26783548 26783859 -150190281 + AluSx SINE Alu 1 312 0 219 308 6 116 chrX 26783859 26783930 -150190210 - L3 LINE CR1 -294 1283 1206 384 304 15 22 chrX 26783933 26784068 -150190072 - L2 LINE L2 -2 3311 3178 7714 180 104 13 chrX 26784079 26786042 -150188098 + L1MDa LINE L1 18 2328 -4212 5051 80 22 146 chrX 26786042 26786569 -150187571 - Tigger3(Golem) DNA MER2_type -1 3028 2437 413 117 0 0 chrX 26786569 26786629 -150187511 - AluS SINE Alu -20 290 231 1025 131 0 0 chrX 26786630 26786767 -150187373 - AluSq/x SINE Alu -173 139 3 5051 80 22 146 chrX 26786767 26787437 -150186703 - Tigger3(Golem) DNA MER2_type -591 2438 1 4115 201 24 15 chrX 26787457 26788745 -150185395 + L1MDa LINE L1 2326 3620 -2920 783 188 231 35 chrX 26788748 26788977 -150185163 + L1MD2 LINE L1 6084 6357 -2 1073 288 91 32 chrX 26789075 26789496 -150184644 - L3 LINE CR1 -393 1184 724 2475 142 36 14 chrX 26789496 26789913 -150184227 - MSTB LTR MaLR 0 426 1 1073 288 91 32 chrX 26789913 26790016 -150184124 - L3 LINE CR1 -853 724 629 266 327 73 0 chrX 26790018 26790128 -150184012 + LTR16A LTR ERVL 10 127 -323 2490 146 2 38 chrX 26790137 26790588 -150183552 - L1MB1 LINE L1 -5 6163 5729 260 241 0 24 chrX 26790883 26790966 -150183174 - MLT1B LTR MaLR -120 270 190 300 133 0 0 chrX 26790971 26791031 -150183109 + (GA)n Simple_repeat Simple_repeat 2 61 0 861 129 66 40 chrX 26791031 26791219 -150182921 - MLT1B LTR MaLR -196 178 1 2043 105 56 7 chrX 26791706 26791991 -150182149 + AluSg SINE Alu 1 299 -11 3479 123 2 38 chrX 26792169 26792513 -150181627 - LTR26B LTR ERV1 0 531 212 2340 77 0 7 chrX 26792513 26792823 -150181317 - AluSx SINE Alu 0 308 1 3479 123 2 38 chrX 26792823 26793028 -150181112 - LTR26B LTR ERV1 -319 212 1 823 110 68 0 chrX 26793128 26793274 -150180866 - Charlie5 DNA MER1_type 0 2619 2464 270 215 15 15 chrX 26793595 26793660 -150180480 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 433 249 68 68 chrX 26793668 26793905 -150180235 + MIR SINE MIR 26 262 0 277 263 118 0 chrX 26794621 26794697 -150179443 + L2 LINE L2 3187 3271 -1 1019 242 8 28 chrX 26794982 26795230 -150178910 + MLT1K LTR MaLR 344 586 -2 2314 104 3 0 chrX 26795241 26795540 -150178600 + AluSx SINE Alu 1 300 -12 363 78 0 0 chrX 26795661 26795712 -150178428 + (TATAG)n Simple_repeat Simple_repeat 2 52 0 944 153 11 28 chrX 26795967 26796143 -150177997 + MER5B DNA MER1_type 1 173 -5 596 205 18 0 chrX 26796394 26796506 -150177634 + MER81 DNA DNA 1 114 0 1192 195 217 7 chrX 26796710 26797120 -150177020 - LTR54B LTR ERV1 -2 496 1 2211 158 6 6 chrX 26797170 26797524 -150176616 + MLT1A1 LTR MaLR 10 363 -2 2213 93 21 0 chrX 26797540 26797830 -150176310 - AluSx SINE Alu -16 296 1 253 279 231 7 chrX 26797884 26798031 -150176109 - MER5A DNA MER1_type -9 180 1 606 293 76 26 chrX 26798150 26798378 -150175762 + L1M4 LINE L1 3545 3802 -2344 2021 86 39 25 chrX 26798378 26798682 -150175458 + AluSx SINE Alu 1 308 0 606 293 76 26 chrX 26798682 26798834 -150175306 + L1M4 LINE L1 3802 3945 -2201 274 346 0 0 chrX 26798853 26798960 -150175180 + MERVL LTR ERVL 3382 3488 -1997 5663 89 34 12 chrX 26798981 26799450 -150174690 - L1MA2 LINE L1 -1 7722 7226 2253 75 30 24 chrX 26799450 26799745 -150174395 - AluSp SINE Alu -16 297 1 5663 89 34 12 chrX 26799745 26800106 -150174034 - L1MA2 LINE L1 -497 7226 6874 2809 118 9 2 chrX 26800106 26800547 -150173593 - L1MA2 LINE L1 -1213 6352 5909 915 121 40 69 chrX 26800543 26800716 -150173424 - L1MA2 LINE L1 -7376 189 22 * 316 345 0 9 chrX 26800726 26800839 -150173301 + MERVL LTR ERVL 3481 3592 -2062 2340 135 15 81 chrX 26800905 26801363 -150172777 - MSTC LTR MaLR 0 428 1 4204 223 69 64 chrX 26801363 26802607 -150171533 - MSTC-int LTR MaLR 0 1651 402 1528 105 93 34 chrX 26802608 26803333 -150170807 + SVA Other Other 483 824 -562 2092 92 4 0 chrX 26803453 26803748 -150170392 + AluSx SINE Alu 22 317 0 814 168 0 0 chrX 26803756 26803875 -150170265 + FLAM_C SINE Alu 1 119 -24 882 95 0 0 chrX 26803875 26804001 -150170139 + (TAGA)n Simple_repeat Simple_repeat 1 126 0 693 259 40 43 chrX 26804025 26804303 -150169837 + L1ME4a LINE L1 5621 5897 -224 786 198 60 48 chrX 26804308 26804556 -150169584 + L1MC5 LINE L1 7133 7383 -578 1747 65 23 0 chrX 26804577 26804794 -150169346 + MER30 DNA MER1_type 9 230 0 1784 179 30 95 chrX 26804800 26804888 -150169252 + L1MC5 LINE L1 7390 7482 -479 2446 31 0 31 chrX 26804888 26805211 -150168929 + AluY SINE Alu 1 314 0 1784 179 30 95 chrX 26805211 26805692 -150168448 + L1MC5 LINE L1 7482 7923 -38 1007 199 95 34 chrX 26805719 26806164 -150167976 + LTR33 LTR ERVL 4 520 -1 219 36 0 0 chrX 26806715 26806743 -150167397 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1708 173 3 21 chrX 26806976 26807259 -150166881 - AluJo SINE Alu -34 278 1 887 225 68 114 chrX 26807281 26807694 -150166446 - L1MC4a LINE L1 -1841 5967 5574 584 168 65 28 chrX 26807694 26807780 -150166360 - MLT1E1 LTR MaLR -543 111 19 2427 148 18 48 chrX 26807780 26807835 -150166305 + MSTB LTR MaLR 1 56 -370 2260 116 0 7 chrX 26807835 26808137 -150166003 + AluSx SINE Alu 1 300 -12 2427 148 18 48 chrX 26808137 26808520 -150165620 + MSTB LTR MaLR 56 426 0 584 168 65 28 chrX 26808520 26808540 -150165600 - MLT1E1 LTR MaLR -635 19 1 1742 134 101 0 chrX 26808732 26809000 -150165140 - AluSx SINE Alu -17 295 1 2280 106 0 0 chrX 26810128 26810420 -150163720 - AluSx SINE Alu -20 292 1 781 151 0 0 chrX 26810967 26811086 -150163054 - AluJb SINE Alu -6 306 188 2062 104 0 31 chrX 26811143 26811431 -150162709 + AluSq SINE Alu 17 295 -18 1809 122 54 30 chrX 26811445 26811780 -150162360 - L1MD1 LINE L1 -6 6630 6288 1506 172 77 30 chrX 26811795 26812092 -150162048 - AluJo SINE Alu -1 311 1 3179 215 27 26 chrX 26812095 26812743 -150161397 - L1MD1 LINE L1 -840 5700 5066 2329 87 10 3 chrX 26812743 26813042 -150161098 + AluSq SINE Alu 1 301 -12 3179 215 27 26 chrX 26813042 26813294 -150160846 - L1MD1 LINE L1 -1474 5066 4816 * 5202 128 6 32 chrX 26813290 26813334 -150160806 - L1MB3 LINE L1 -3 6180 6136 2075 135 3 7 chrX 26813334 26813630 -150160510 - AluJb SINE Alu -17 295 1 5202 128 6 32 chrX 26813630 26814285 -150159855 - L1MB3 LINE L1 -47 6136 5466 219 69 0 0 chrX 26814285 26814314 -150159826 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1827 150 32 0 chrX 26814317 26814597 -150159543 - AluSx SINE Alu -23 289 1 5202 128 6 32 chrX 26814597 26814759 -150159381 - L1MB3 LINE L1 -719 5464 5337 4882 220 22 36 chrX 26814764 26814899 -150159241 - L1MD1 LINE L1 -1754 4786 4651 252 0 0 0 chrX 26814899 26814927 -150159213 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 4882 220 22 36 chrX 26814927 26815132 -150159008 - L1MD1 LINE L1 -1889 4651 4445 2450 86 0 0 chrX 26815132 26815434 -150158706 - AluSg SINE Alu -8 302 1 4882 220 22 36 chrX 26815434 26816430 -150157710 - L1MD1 LINE L1 -2095 4445 3467 5024 180 80 18 chrX 26816473 26817587 -150156553 - L1MD1 LINE L1 -3462 3078 2034 2448 100 0 0 chrX 26817587 26817897 -150156243 + AluSx SINE Alu 1 310 -2 5024 180 80 18 chrX 26817897 26818730 -150155410 - L1MD1 LINE L1 -4506 2034 810 2115 151 16 28 chrX 26818961 26819398 -150154742 + L1PA3 LINE L1 5724 6155 0 541 219 0 8 chrX 26819412 26819535 -150154605 - L1M4 LINE L1 -1150 4996 4875 2407 124 20 18 chrX 26819555 26819949 -150154191 + L1MB8 LINE L1 5783 6177 -1 626 149 0 0 chrX 26819973 26820060 -150154080 - AluJb SINE Alu -32 280 194 2360 105 0 0 chrX 26820216 26820522 -150153618 + AluSx SINE Alu 1 306 -6 352 215 38 0 chrX 26820610 26820689 -150153451 + L1ME LINE L1 5524 5605 -516 2384 61 0 29 chrX 26820933 26821243 -150152897 + AluY SINE Alu 1 301 -10 1171 248 12 93 chrX 26821346 26821766 -150152374 + MLT1J LTR MaLR 118 503 -8 212 300 14 29 chrX 26821878 26821948 -150152192 + L2 LINE L2 3186 3254 -18 1975 149 140 8 chrX 26822199 26822555 -150151585 + MER57A LTR ERV1 1 403 0 637 126 50 17 chrX 26822555 26822674 -150151466 + L1MA9 LINE L1 6151 6273 -39 3488 212 71 78 chrX 26823555 26824000 -150150140 - L1MC4 LINE L1 0 8042 7595 2363 77 47 0 chrX 26824000 26824298 -150149842 - AluSx SINE Alu 0 312 1 3488 212 71 78 chrX 26824298 26824997 -150149143 - L1MC4 LINE L1 -447 7595 6907 1091 178 76 10 chrX 26824997 26825194 -150148946 - MER6B DNA MER2_type 0 210 1 3488 212 71 78 chrX 26825194 26825362 -150148778 - L1MC4 LINE L1 -1135 6907 6739 2280 78 3 0 chrX 26825370 26825706 -150148434 - AluSp SINE Alu 0 337 1 2273 112 0 0 chrX 26826002 26826296 -150147844 - AluSx SINE Alu -18 294 1 29 47 0 0 chrX 26826761 26826804 -150147336 + AT_rich Low_complexity Low_complexity 1 43 0 1487 148 34 15 chrX 26827056 26827320 -150146820 - L1MC1 LINE L1 0 6727 6459 1260 96 5 16 chrX 26827322 26827509 -150146631 + THE1C-int LTR MaLR 1390 1574 -6 1905 165 40 40 chrX 26827514 26827889 -150146251 + THE1C LTR MaLR 1 375 0 13464 126 23 1 chrX 26827889 26829807 -150144333 - L1M1 LINE L1 -5583 1982 22 273 268 105 59 chrX 26830047 26830200 -150143940 + MLT1I LTR MaLR 75 234 -175 1851 102 70 0 chrX 26830393 26830649 -150143491 + L1M1 LINE L1 920 1193 -6372 271 204 56 21 chrX 26830658 26830710 -150143430 + (TA)n Simple_repeat Simple_repeat 2 51 -97 2620 67 103 3 chrX 26830710 26831041 -150143099 + THE1B LTR MaLR 1 364 0 271 204 56 21 chrX 26831041 26831130 -150143010 + (TA)n Simple_repeat Simple_repeat 51 148 0 2321 104 0 22 chrX 26831634 26831951 -150142189 - AluSx SINE Alu -2 310 1 1268 272 12 26 chrX 26832096 26832181 -150141959 + LTR16C LTR ERVL 151 236 -255 4867 140 97 13 chrX 26832181 26832976 -150141164 - MER6 DNA MER2_type -3 862 1 1268 272 12 26 chrX 26832976 26833236 -150140904 + LTR16C LTR ERVL 236 491 0 280 246 62 0 chrX 26833569 26833634 -150140506 - L2 LINE L2 0 3313 3245 956 264 61 0 chrX 26834112 26834343 -150139797 + HERVL LTR ERVL 4036 4280 -1374 1014 295 73 20 chrX 26834343 26834933 -150139207 - L1MC1 LINE L1 -747 5793 5230 2520 74 0 3 chrX 26834933 26835243 -150138897 + AluSq SINE Alu 1 309 -4 1014 295 73 20 chrX 26835243 26835747 -150138393 - L1MC1 LINE L1 -1310 5230 4754 1937 118 22 12 chrX 26835759 26836080 -150138060 + L1 LINE L1 4519 4842 -1304 1511 230 27 18 chrX 26836244 26836575 -150137565 - L1MC1 LINE L1 -5981 559 226 704 179 26 0 chrX 26836594 26836711 -150137429 - L1MC1 LINE L1 -6406 134 15 917 224 20 43 chrX 26836714 26836969 -150137171 - L1ME3A LINE L1 -1 6169 5921 23 92 0 0 chrX 26837045 26837110 -150137030 + AT_rich Low_complexity Low_complexity 1 65 0 483 248 64 14 chrX 26837147 26837288 -150136852 - MIR SINE MIR -71 191 44 931 123 34 7 chrX 26837931 26838077 -150136063 - AluJo SINE Alu -162 150 1 933 231 89 6 chrX 26838416 26838837 -150135303 - LTR33 LTR ERVL 0 521 13 188 83 0 28 chrX 26838913 26838949 -150135191 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2280 114 7 0 chrX 26839132 26839485 -150134655 - AluSx SINE Alu 0 355 1 836 160 0 0 chrX 26839958 26840083 -150134057 + FLAM_C SINE Alu 1 125 -18 2138 129 0 7 chrX 26840208 26840511 -150133629 - AluSq SINE Alu -12 301 1 2302 101 0 3 chrX 26841002 26841299 -150132841 + AluSx SINE Alu 1 296 -16 425 264 185 34 chrX 26841733 26842203 -150131937 + L1MB2 LINE L1 4729 5269 -877 335 221 39 0 chrX 26842229 26842306 -150131834 + MER116 DNA Mariner 1 80 0 4688 117 33 9 chrX 26842514 26843204 -150130936 + L1MB2 LINE L1 5463 6169 -2 549 298 120 35 chrX 26843233 26843561 -150130579 + L1MC4a LINE L1 5438 5807 -2001 2700 84 20 3 chrX 26843561 26843908 -150130232 - L1PA10 LINE L1 -4 6164 5812 549 298 120 35 chrX 26843908 26843979 -150130161 + L1MC4a LINE L1 5807 5871 -1937 1726 156 143 3 chrX 26844100 26844421 -150129719 + MLT2D LTR ERVL 1 366 -48 1071 233 0 0 chrX 26844421 26844636 -150129504 + L1MC/D LINE L1 4042 4256 -1890 2432 84 0 3 chrX 26845743 26846051 -150128089 - AluSg SINE Alu -3 307 1 4301 224 47 7 chrX 26847096 26848163 -150125977 + L1MC/D LINE L1 4284 5393 -753 396 147 93 0 chrX 26848217 26848292 -150125848 + L1MC/D LINE L1 5387 5468 -865 6073 128 19 5 chrX 26848292 26849451 -150124689 + L1PA16 LINE L1 4991 6166 0 2113 115 11 80 chrX 26849454 26849602 -150124538 + Tigger1 DNA MER2_type 2078 2235 -183 843 160 15 0 chrX 26849602 26849733 -150124407 - FLAM_C SINE Alu 0 133 1 2113 115 11 80 chrX 26849733 26849948 -150124192 + Tigger1 DNA MER2_type 2235 2416 -2 194 321 107 9 chrX 26849998 26850110 -150124030 - MIR3 SINE MIR -12 196 74 2252 129 0 0 chrX 26850382 26850693 -150123447 + AluSx SINE Alu 1 311 -1 1899 139 7 4 chrX 26850818 26851130 -150123010 - AluJb SINE Alu 0 313 1 2254 120 7 0 chrX 26851646 26851954 -150122186 - AluSx SINE Alu -2 310 1 3585 65 23 0 chrX 26851990 26852424 -150121716 + MLT2A1 LTR ERVL 1 444 0 297 294 108 0 chrX 26852556 26852658 -150121482 - L2 LINE L2 -2 3270 3158 527 310 13 6 chrX 26853134 26853292 -150120848 - MER5B DNA MER1_type -16 162 4 418 278 67 43 chrX 26853885 26854059 -150120081 - MIR SINE MIR -63 145 4 1332 278 19 45 chrX 26854170 26854409 -150119731 + LTR16B LTR ERVL 9 233 -231 2179 88 7 44 chrX 26854409 26854735 -150119405 - AluSx SINE Alu 0 315 1 1332 278 19 45 chrX 26854735 26854961 -150119179 + LTR16B LTR ERVL 233 463 -1 1025 174 24 19 chrX 26855707 26855919 -150118221 - AluJo SINE Alu -2 310 98 193 272 130 22 chrX 26855946 26856038 -150118102 - MIR SINE MIR 0 262 161 2367 100 0 3 chrX 26856038 26856347 -150117793 + AluSg SINE Alu 1 308 -2 1434 226 140 21 chrX 26856366 26856732 -150117408 + LTR16C LTR ERVL 1 429 -62 2566 108 34 3 chrX 26856732 26857085 -150117055 + THE1B LTR MaLR 1 364 0 1434 226 140 21 chrX 26857085 26857155 -150116985 + LTR16C LTR ERVL 429 489 -2 2257 109 3 0 chrX 26858506 26858809 -150115331 - AluSx SINE Alu -8 304 1 711 211 126 0 chrX 26858912 26859102 -150115038 - MIR SINE MIR 0 262 49 2295 91 10 3 chrX 26859300 26859608 -150114532 - AluSx SINE Alu 0 312 3 1053 271 121 15 chrX 26859853 26860259 -150113881 - MLT1L LTR MaLR -14 601 153 279 304 189 40 chrX 26860848 26860996 -150113144 - MIR SINE MIR -44 218 49 353 295 49 47 chrX 26861094 26861278 -150112862 + MIR SINE MIR 2 187 -61 1646 170 52 14 chrX 26861792 26861912 -150112228 + AluJo SINE Alu 2 116 -196 2358 95 7 0 chrX 26861912 26862217 -150111923 + AluSg SINE Alu 1 307 -3 1646 170 52 14 chrX 26862217 26862385 -150111755 + AluJo SINE Alu 116 301 -11 2512 213 61 2 chrX 26862400 26862926 -150111214 - L1ME3A LINE L1 0 6170 5614 282 250 37 46 chrX 26863265 26863373 -150110767 + MIR SINE MIR 40 146 -62 3554 109 0 4 chrX 26864932 26865436 -150108704 + L1PA16 LINE L1 5656 6157 -9 2585 65 3 0 chrX 26865521 26865830 -150108310 + AluSp SINE Alu 1 310 -3 2052 150 0 10 chrX 26866076 26866376 -150107764 - AluJo SINE Alu -15 297 1 6768 106 23 43 chrX 26866445 26867516 -150106624 + L1MA6 LINE L1 4723 5747 -553 2145 121 0 16 chrX 26867516 26867821 -150106319 + AluSx SINE Alu 1 300 -12 6768 106 23 43 chrX 26867821 26868363 -150105777 + L1MA6 LINE L1 5747 6299 -1 235 288 12 25 chrX 26868371 26868451 -150105689 - L1ME LINE L1 -312 5858 5780 192 245 19 0 chrX 26869381 26869434 -150104706 - MIR3 SINE MIR -16 192 139 972 311 168 18 chrX 26869440 26870359 -150103781 - L2 LINE L2 -2 3270 2238 2212 150 40 67 chrX 26870360 26870806 -150103334 - Tigger2a DNA MER2_type 0 434 1 229 289 0 13 chrX 26870840 26870916 -150103224 - LTR33 LTR ERVL -4 517 443 * 305 179 18 122 chrX 26870908 26871043 -150103097 - MLT1H LTR MaLR -10 533 281 1481 304 11 4 chrX 26871089 26871669 -150102471 - HERVL LTR ERVL -1368 4286 3700 2499 136 42 45 chrX 26871669 26872096 -150102044 + MSTC LTR MaLR 1 426 -2 2308 207 11 8 chrX 26872096 26872565 -150101575 + MSTC-int LTR MaLR 2 471 -1264 26 0 0 0 chrX 26872565 26872591 -150101549 + AT_rich Low_complexity Low_complexity 1 26 0 6017 96 39 26 chrX 26872591 26873511 -150100629 - SVA Other Other 0 1386 455 1079 152 8 91 chrX 26873824 26874067 -150100073 - L1 LINE L1 -877 5269 5047 * 3459 210 59 36 chrX 26874058 26875006 -150099134 - L1 LINE L1 -1711 4435 3466 541 294 97 4 chrX 26875026 26875254 -150098886 - MIR SINE MIR -3 259 11 1929 120 60 27 chrX 26875316 26875616 -150098524 + AluSx SINE Alu 1 310 -2 665 344 57 25 chrX 26876596 26877038 -150097102 + HAL1b LINE L1 95 550 -798 1583 133 74 23 chrX 26877409 26877718 -150096422 - L1MD3 LINE L1 -10 7985 7661 1519 260 36 46 chrX 26877699 26877989 -150096151 - L1MC5 LINE L1 -30 7931 7640 * 2279 87 24 0 chrX 26877989 26878276 -150095864 - AluSg SINE Alu -16 294 1 1519 260 36 46 chrX 26878276 26878770 -150095370 - L1MC5 LINE L1 -321 7640 7244 740 239 127 23 chrX 26878768 26879036 -150095104 - L1MC4 LINE L1 -728 7233 6962 * 2522 54 0 0 chrX 26879100 26879395 -150094745 + AluY SINE Alu 1 295 -16 1016 190 58 0 chrX 26880022 26880227 -150093913 - MIR SINE MIR -19 243 27 255 31 0 0 chrX 26880262 26880294 -150093846 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2317 118 3 0 chrX 26880389 26880694 -150093446 + AluSx SINE Alu 1 306 -6 564 232 129 46 chrX 26881064 26881305 -150092835 + MIR SINE MIR 1 261 -1 2077 137 0 0 chrX 26881579 26881902 -150092238 + AluSx SINE Alu 1 323 0 515 252 0 22 chrX 26882560 26882588 -150091552 - LTR16C LTR ERVL 0 491 464 2602 109 3 8 chrX 26882588 26882954 -150091186 + THE1B LTR MaLR 1 364 0 515 252 0 22 chrX 26882954 26883060 -150091080 - LTR16C LTR ERVL -27 464 360 1079 129 169 0 chrX 26883214 26883415 -150090725 - LTR40b LTR ERVL 0 462 228 250 237 53 13 chrX 26883413 26883489 -150090651 - LTR16C LTR ERVL -260 231 153 * 3819 184 48 27 chrX 26883784 26884593 -150089547 - LTR1B LTR ERV1 0 826 1 2204 135 9 15 chrX 26884593 26884903 -150089237 - HUERS-P2 LTR ERV1 0 3088 2779 2334 99 10 0 chrX 26884903 26885205 -150088935 + AluSx SINE Alu 1 305 -7 2204 135 9 15 chrX 26885205 26885219 -150088921 - HUERS-P2 LTR ERV1 -309 2779 2766 11856 145 2 8 chrX 26885240 26886806 -150087334 - LTR1B-int LTR ERV1 -488 6603 5029 2232 67 7 18 chrX 26886806 26887090 -150087050 + AluSp SINE Alu 1 281 -32 561 30 0 0 chrX 26887090 26887157 -150086983 + (GA)n Simple_repeat Simple_repeat 2 68 0 11856 145 2 8 chrX 26887157 26887345 -150086795 - LTR1B-int LTR ERV1 -2060 5031 4859 1794 148 53 18 chrX 26887345 26887682 -150086458 + L1PB1 LINE L1 698 1046 -5817 15570 184 15 18 chrX 26887686 26889303 -150084837 + L1PB1 LINE L1 1094 2714 -4153 2517 77 0 0 chrX 26889303 26889614 -150084526 + AluY SINE Alu 1 311 0 15570 184 15 18 chrX 26889614 26891133 -150083007 + L1PB1 LINE L1 2714 4236 -2631 2187 95 10 14 chrX 26891133 26891429 -150082711 + AluSc SINE Alu 1 295 -14 15570 184 15 18 chrX 26891429 26893878 -150080262 + L1PB1 LINE L1 4236 6867 0 20919 159 21 15 chrX 26893887 26898494 -150075646 - LTR1B-int LTR ERV1 -417 2671 1 4049 177 50 19 chrX 26898494 26899295 -150074845 - LTR1B LTR ERV1 0 826 1 4275 94 25 102 chrX 26899698 26900446 -150073694 - LTR8 LTR ERV1 0 691 1 1684 150 5 125 chrX 26900794 26901187 -150072953 - MER7A DNA MER2_type -1 345 2 1989 122 3 44 chrX 26901523 26901842 -150072298 + AluSx SINE Alu 1 307 0 370 271 100 37 chrX 26901981 26902143 -150071997 - LTR33A LTR ERVL -361 162 17 1733 145 6 31 chrX 26902770 26903119 -150071021 + MER61C LTR ERV1 1 434 0 2439 69 0 0 chrX 26903394 26903684 -150070456 + AluY SINE Alu 1 290 -21 1502 231 52 28 chrX 26903707 26904245 -150069895 - L1M4 LINE L1 -1139 5007 4457 2320 162 63 103 chrX 26904568 26905305 -150068835 + Charlie2 DNA MER1_type 2032 2739 -123 254 260 250 0 chrX 26905305 26905405 -150068735 + MLT1J LTR MaLR 1 125 -386 2369 99 5 94 chrX 26905405 26905819 -150068321 - MER51B LTR ERV1 0 377 1 4709 126 119 101 chrX 26905820 26906083 -150068057 - MER51B-int LTR ERV1 0 7816 7559 2499 78 0 3 chrX 26906083 26906389 -150067751 + AluSq SINE Alu 1 305 -8 4709 126 119 101 chrX 26906389 26907166 -150066974 - MER51B-int LTR ERV1 -257 7559 6757 1982 81 186 134 chrX 26907164 26907296 -150066844 - MER51B-int LTR ERV1 -1599 5938 5814 * 234 51 0 0 chrX 26907296 26907335 -150066805 + AluY SINE Alu 270 308 0 1982 81 186 134 chrX 26907335 26907502 -150066638 - MER51B-int LTR ERV1 -1723 5814 5657 2012 142 3 0 chrX 26907502 26907790 -150066350 + AluSx SINE Alu 11 299 -13 1982 81 186 134 chrX 26907790 26907920 -150066220 - MER51B-int LTR ERV1 -1880 5657 5446 1115 88 0 7 chrX 26907918 26908065 -150066075 - MER51B-int LTR ERV1 -2661 4876 4731 * 2484 68 6 17 chrX 26908188 26908540 -150065600 - MER51B-int LTR ERV1 -5251 2565 2218 * 9307 143 31 23 chrX 26908528 26910143 -150063997 - MER51B-int LTR ERV1 -5860 1956 329 1261 94 35 0 chrX 26910131 26910301 -150063839 - MER51B-int LTR ERV1 -7640 176 1 * 2390 95 5 97 chrX 26910303 26910715 -150063425 - MER51B LTR ERV1 -3 374 1 1754 173 68 57 chrX 26910736 26911189 -150062951 + LTR56 LTR ERV1 9 467 0 542 279 118 43 chrX 26911190 26911512 -150062628 + MLT1J1 LTR MaLR 96 441 -5 9323 89 30 1 chrX 26911958 26913209 -150060931 + HSMAR1 DNA Mariner 1 1287 0 1200 222 47 35 chrX 26913487 26913679 -150060461 + HsTC2 DNA Tc2 2 201 -1697 2323 98 0 3 chrX 26913679 26913975 -150060165 + AluSx SINE Alu 1 295 -17 1200 222 47 35 chrX 26913975 26914120 -150060020 + HsTC2 DNA Tc2 201 343 -1555 552 269 52 21 chrX 26914122 26914315 -150059825 + HsTC2 DNA Tc2 1248 1622 -276 516 270 91 34 chrX 26914708 26914976 -150059164 + MLT1J1 LTR MaLR 26 271 -175 3765 128 28 68 chrX 26915012 26915582 -150058558 + LTR8 LTR ERV1 1 539 -152 2022 141 0 20 chrX 26915582 26915887 -150058253 + AluJb SINE Alu 1 299 -13 3765 128 28 68 chrX 26915887 26916027 -150058113 + LTR8 LTR ERV1 539 683 -8 4733 45 30 0 chrX 26916030 26916602 -150057538 + LTR10C LTR ERV1 1 589 -2 2195 125 0 19 chrX 26917467 26917803 -150056337 - AluSx SINE Alu 0 312 1 277 192 27 0 chrX 26917820 26917893 -150056247 + L1MEd LINE L1 42 116 -6003 10325 218 48 24 chrX 26918515 26919299 -150054841 - HERVL40 LTR ERVL -688 4660 3897 2339 82 0 33 chrX 26919299 26919604 -150054536 - AluSc SINE Alu -14 295 1 10325 218 48 24 chrX 26919604 26921261 -150052879 - HERVL40 LTR ERVL -1451 3897 2036 7637 229 51 68 chrX 26921246 26923354 -150050786 - HERVL40 LTR ERVL -3363 2167 95 * 2121 146 0 0 chrX 26923354 26923655 -150050485 - AluJb SINE Alu -11 301 1 7637 229 51 68 chrX 26923655 26923740 -150050400 - HERVL40 LTR ERVL -5435 95 10 583 183 43 25 chrX 26923747 26923912 -150050228 - LTR40b LTR ERVL 0 462 304 801 243 11 11 chrX 26923926 26924115 -150050025 + REP3 LTR ERV 1 189 -373 558 173 15 68 chrX 26926101 26926234 -150047906 + REP3 LTR ERV 201 326 -236 2441 79 7 7 chrX 26926235 26926570 -150047570 + AluSx SINE Alu 6 340 0 882 179 62 10 chrX 26926573 26926768 -150047372 + REP3 LTR ERV 314 518 -44 1442 228 24 9 chrX 26926785 26927114 -150047026 - LTR40a LTR ERVL -185 334 1 251 337 0 0 chrX 26927380 26927475 -150046665 + (CAG)n Simple_repeat Simple_repeat 2 96 0 243 223 25 25 chrX 26927533 26927654 -150046486 + (CGG)n Simple_repeat Simple_repeat 1 121 0 2331 106 0 3 chrX 26929155 26929457 -150044683 - AluSg SINE Alu -9 301 1 3240 118 37 85 chrX 26929572 26930219 -150043921 + LTR8A LTR ERV1 1 616 -111 562 133 0 0 chrX 26930232 26930307 -150043833 + AluSg/x SINE Alu 211 285 -27 462 49 0 0 chrX 26930307 26930368 -150043772 + (CA)n Simple_repeat Simple_repeat 2 62 0 606 186 8 17 chrX 26930371 26930489 -150043651 + LTR8 LTR ERV1 575 691 0 184 351 54 18 chrX 26930492 26930660 -150043480 + L2 LINE L2 2737 2910 -404 834 319 6 16 chrX 26930660 26930973 -150043167 - LTR16B LTR ERVL 0 464 155 1019 255 86 65 chrX 26930973 26931169 -150042971 + MER41C LTR ERV1 1 191 -363 2203 90 7 13 chrX 26931169 26931470 -150042670 + AluSx SINE Alu 1 299 -13 1019 255 86 65 chrX 26931470 26931807 -150042333 + MER41C LTR ERV1 191 545 -9 386 302 0 104 chrX 26931809 26931991 -150042149 - LTR16B LTR ERVL -298 166 4 400 335 116 55 chrX 26931999 26932309 -150041831 + L2 LINE L2 2916 3244 -28 4178 87 9 2 chrX 26933287 26933837 -150040303 - MER41A LTR ERV1 0 554 1 2477 82 0 19 chrX 26934054 26934372 -150039768 + AluSx SINE Alu 1 312 0 309 120 40 0 chrX 26934517 26934567 -150039573 - L1MD2 LINE L1 -3 6356 6305 3498 135 80 55 chrX 26934572 26935259 -150038881 + MER50 LTR ERV1 8 711 -23 4631 164 24 71 chrX 26935259 26935358 -150038782 - L1MD2 LINE L1 -49 6310 6208 1618 158 75 22 chrX 26935358 26935636 -150038504 - AluJo SINE Alu -18 294 2 4631 164 24 71 chrX 26935636 26935764 -150038376 - L1MD2 LINE L1 -151 6208 6076 2360 110 3 0 chrX 26935764 26936074 -150038066 - AluSq SINE Alu -2 311 1 4631 164 24 71 chrX 26936074 26937182 -150036958 - L1MD2 LINE L1 -283 6076 5035 371 138 0 0 chrX 26937272 26937330 -150036810 - MLT1B LTR MaLR 0 390 333 1859 213 87 0 chrX 27037404 27037794 -149936346 + MER69 DNA AcHobo 647 1070 -1456 249 221 44 0 chrX 27037829 27037897 -149936243 + (TA)n Simple_repeat Simple_repeat 1 71 0 953 214 94 18 chrX 27037903 27038179 -149935961 + MER69 DNA AcHobo 2223 2519 -7 201 74 0 0 chrX 27038466 27038493 -149935647 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 808 303 17 14 chrX 27039985 27040282 -149933858 + LTR16A LTR ERVL 153 450 0 354 222 22 0 chrX 27040712 27040802 -149933338 - MER33 DNA MER1_type 0 363 272 21 57 0 0 chrX 27041110 27041145 -149932995 + GC_rich Low_complexity Low_complexity 1 35 0 2095 120 0 0 chrX 27041982 27042291 -149931849 + AluSx SINE Alu 1 309 -3 295 253 101 39 chrX 27042890 27043068 -149931072 + L3 LINE CR1 1098 1286 -291 222 263 40 30 chrX 27043753 27043852 -149930288 - L2 LINE L2 -1099 2215 2116 300 200 0 0 chrX 27043852 27043912 -149930228 + Charlie7 DNA MER1_type 35 94 -2518 1631 121 85 21 chrX 27043914 27044195 -149929945 - AluJb SINE Alu -13 299 1 1814 133 55 7 chrX 27044201 27044348 -149929792 - AluSx SINE Alu -5 307 168 1614 119 44 8 chrX 27044348 27044600 -149929540 - AluSp SINE Alu -44 269 9 1814 133 55 7 chrX 27044600 27044745 -149929395 - AluSx SINE Alu -144 168 1 942 127 0 0 chrX 27044747 27044881 -149929259 - AluSq/x SINE Alu -179 134 1 589 92 163 0 chrX 27044899 27044997 -149929143 - L1MD3 LINE L1 -340 7655 7542 320 298 75 25 chrX 27045206 27045367 -149928773 - L2 LINE L2 -1231 2083 1915 1167 112 0 0 chrX 27045765 27045944 -149928196 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1944 102 3 11 chrX 27045944 27046227 -149927913 - AluSq SINE Alu -32 281 1 1201 276 68 40 chrX 27046231 27046702 -149927438 - HERV16 LTR ERVL -2660 2336 1853 367 226 191 9 chrX 27046704 27046819 -149927321 + LTR16C LTR ERVL 194 329 -162 2329 113 3 42 chrX 27046836 27047166 -149926974 + L1MA5 LINE L1 5757 6072 -228 2416 99 0 43 chrX 27047166 27047518 -149926622 + MER1B DNA MER1_type 1 337 0 2329 113 3 42 chrX 27047518 27047566 -149926574 + L1MA5 LINE L1 6072 6120 -180 1901 130 20 7 chrX 27047566 27047865 -149926275 - AluJb SINE Alu -9 303 1 398 298 57 14 chrX 27048073 27048214 -149925926 + MIR SINE MIR 8 154 -108 859 236 75 8 chrX 27048372 27048605 -149925535 - L1MD3 LINE L1 -179 7816 7454 1852 125 53 23 chrX 27048605 27048908 -149925232 + AluJb SINE Alu 1 312 0 859 236 75 8 chrX 27048908 27048922 -149925218 - L1MD3 LINE L1 -541 7454 7442 295 265 53 53 chrX 27048928 27048973 -149925167 + L1MC4a LINE L1 5911 5955 -1853 1178 164 103 0 chrX 27048973 27049187 -149924953 - MER46A DNA MER2_type 0 236 1 295 265 53 53 chrX 27049187 27049292 -149924848 + L1MC4a LINE L1 5954 6061 -1747 796 156 8 118 chrX 27049334 27049572 -149924568 + L1MC4 LINE L1 6930 7141 -901 329 268 73 0 chrX 27049572 27049654 -149924486 - L1MC4 LINE L1 -1340 6702 6615 243 262 71 0 chrX 27049655 27049739 -149924401 - L1MC4 LINE L1 -1339 6703 6614 243 228 22 43 chrX 27049657 27049749 -149924391 + L1MC4 LINE L1 6614 6703 -1339 233 172 35 0 chrX 27049752 27049810 -149924330 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 306 261 0 11 chrX 27049822 27049910 -149924230 + L1MC4 LINE L1 7185 7271 -771 1822 125 0 104 chrX 27049910 27050109 -149924031 - AluJo SINE Alu 0 302 151 1806 157 3 10 chrX 27050109 27050422 -149923718 - AluJb SINE Alu -1 311 1 1822 125 0 104 chrX 27050422 27050559 -149923581 - AluJo SINE Alu -151 151 1 2464 213 58 85 chrX 27051184 27051484 -149922656 + L1MC4 LINE L1 7161 7467 -575 2052 167 11 19 chrX 27051484 27051850 -149922290 - MLT1A1 LTR MaLR 0 365 3 2464 213 58 85 chrX 27051850 27051934 -149922206 + L1MC4 LINE L1 7467 7552 -490 2023 77 43 47 chrX 27051934 27052233 -149921907 + AluSx SINE Alu 1 298 -14 2464 213 58 85 chrX 27052233 27052515 -149921625 + L1MC4 LINE L1 7552 7840 -202 2228 86 3 16 chrX 27052515 27052829 -149921311 + AluSx SINE Alu 1 310 -2 2464 213 58 85 chrX 27052829 27052894 -149921246 + L1MC4 LINE L1 7840 7905 -137 1701 165 27 0 chrX 27052894 27053191 -149920949 + AluJb SINE Alu 1 305 -7 2464 213 58 85 chrX 27053191 27053362 -149920778 + L1MC4 LINE L1 7905 8042 0 789 169 50 30 chrX 27054225 27054375 -149919765 + L1MB2 LINE L1 5967 6123 -48 2106 77 57 17 chrX 27054375 27054673 -149919467 + AluSg SINE Alu 1 310 0 789 169 50 30 chrX 27054673 27054723 -149919417 + L1MB2 LINE L1 6123 6171 0 22 0 0 0 chrX 27054723 27054745 -149919395 + AT_rich Low_complexity Low_complexity 1 22 0 506 133 0 0 chrX 27054792 27054867 -149919273 - Alu SINE Alu -9 302 228 895 181 0 12 chrX 27054869 27055035 -149919105 - AluJo SINE Alu -148 164 1 348 24 0 0 chrX 27055546 27055587 -149918553 + (TG)n Simple_repeat Simple_repeat 1 41 0 613 275 154 51 chrX 27056210 27056566 -149917574 - MLT1K LTR MaLR -116 472 80 1291 293 74 24 chrX 27056588 27057086 -149917054 + MLT1G1 LTR MaLR 73 595 0 728 149 8 30 chrX 27057097 27057231 -149916909 + MSTC LTR MaLR 1 131 -297 5234 333 43 34 chrX 27057240 27057254 -149916886 + ERVL LTR ERVL 2355 2367 -3397 2246 99 0 0 chrX 27057254 27057556 -149916584 + AluSg1 SINE Alu 1 302 -7 5234 333 43 34 chrX 27057556 27058245 -149915895 + ERVL LTR ERVL 2367 3048 -2716 1859 155 16 0 chrX 27058245 27058549 -149915591 - AluJo SINE Alu -3 309 1 5234 333 43 34 chrX 27058549 27059279 -149914861 + ERVL LTR ERVL 3048 3769 -1995 2747 71 16 27 chrX 27059279 27059647 -149914493 + THE1B LTR MaLR 1 364 0 5234 333 43 34 chrX 27059647 27060860 -149913280 + ERVL LTR ERVL 3769 5029 -735 943 267 87 76 chrX 27061309 27061758 -149912382 + LTR16A LTR ERVL 1 454 -3 8214 160 58 24 chrX 27061976 27063505 -149910635 - MER45R DNA AcHobo 0 1581 1 1131 258 21 14 chrX 27063561 27063848 -149910292 - LTR16C LTR ERVL 0 491 203 393 70 0 0 chrX 27065185 27065242 -149908898 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1351 175 0 40 chrX 27065242 27065493 -149908647 - AluJo SINE Alu -27 285 45 1761 142 35 17 chrX 27065534 27065823 -149908317 - AluJb SINE Alu -18 294 1 372 321 157 24 chrX 27065888 27066339 -149907801 - L1ME4a LINE L1 -75 6046 5536 195 236 135 81 chrX 27066686 27066834 -149907306 + L2 LINE L2 2925 3080 -192 1847 205 42 16 chrX 27066894 27067323 -149906817 - LTR47B LTR ERVL -3 440 1 2307 111 0 7 chrX 27067340 27067646 -149906494 - AluSx SINE Alu -8 304 1 2189 122 7 0 chrX 27068253 27068548 -149905592 + AluJb SINE Alu 1 297 -15 197 319 14 0 chrX 27068552 27068624 -149905516 + MIR SINE MIR 136 208 -54 337 224 33 125 chrX 27069640 27069792 -149904348 - MLT1H LTR MaLR -169 380 243 997 136 6 40 chrX 27069792 27069968 -149904172 + AluJb SINE Alu 136 305 -7 328 249 115 46 chrX 27069971 27070188 -149903952 - MLT1H LTR MaLR -296 253 22 1799 167 7 7 chrX 27070232 27070526 -149903614 + AluJb SINE Alu 3 296 -16 698 129 88 82 chrX 27070682 27070750 -149903390 - L1MA9 LINE L1 -5 6307 6241 2262 65 76 7 chrX 27070750 27071041 -149903099 - AluY SINE Alu 0 311 1 698 129 88 82 chrX 27071041 27071143 -149902997 - L1MA9 LINE L1 -71 6241 6136 2444 92 0 0 chrX 27071156 27071451 -149902689 + AluSx SINE Alu 1 295 -17 840 154 0 8 chrX 27071453 27071576 -149902564 - AluJo/FLAM SINE Alu -190 122 1 2380 107 0 3 chrX 27072359 27072667 -149901473 + AluSp SINE Alu 1 307 -6 2192 100 29 0 chrX 27072966 27073245 -149900895 + AluSx SINE Alu 3 289 -23 1667 147 25 10 chrX 27073304 27073365 -149900775 - MER33 DNA MER1_type -2262 323 264 2038 128 17 3 chrX 27073365 27073653 -149900487 - AluJb SINE Alu -19 293 2 1667 147 25 10 chrX 27073653 27073905 -149900235 - MER33 DNA MER1_type -2321 264 5 275 318 11 0 chrX 27074118 27074206 -149899934 + L1MC/D LINE L1 5494 5582 -2226 893 139 23 0 chrX 27074246 27074375 -149899765 + FLAM_C SINE Alu 2 133 0 570 304 126 29 chrX 27075831 27076212 -149897928 - LTR16A LTR ERVL 0 450 33 237 307 68 11 chrX 27076230 27076318 -149897822 - MIR SINE MIR -168 94 2 234 132 0 0 chrX 27076661 27076699 -149897441 + L1P4 LINE L1 5870 5907 -259 1890 127 79 7 chrX 27076700 27076992 -149897148 + AluSq SINE Alu 1 313 0 1981 118 3 7 chrX 27076999 27077296 -149896844 + L1PA15 LINE L1 5870 6165 0 2212 103 0 25 chrX 27077463 27077798 -149896342 - AluSx SINE Alu 0 327 1 1667 151 0 109 chrX 27077886 27077906 -149896234 - AluJb SINE Alu 0 302 281 357 24 0 0 chrX 27077906 27077948 -149896192 + (TG)n Simple_repeat Simple_repeat 1 42 0 1667 151 0 109 chrX 27077948 27078265 -149895875 - AluJb SINE Alu -21 281 2 931 256 23 5 chrX 27078281 27078500 -149895640 - MIR SINE MIR -14 248 26 665 276 20 20 chrX 27078954 27079153 -149894987 + MIR3 SINE MIR 10 208 0 1991 156 0 20 chrX 27079670 27079971 -149894169 - AluJb SINE Alu -16 296 2 206 323 16 0 chrX 27080685 27080747 -149893393 + MIR SINE MIR 88 150 -112 729 235 59 40 chrX 27081648 27081920 -149892220 - LTR33 LTR ERVL -7 514 238 2647 10 10 0 chrX 27082172 27082460 -149891680 - AluYa5 SINE Alu -3 308 18 873 123 0 0 chrX 27082508 27082630 -149891510 - AluSg/x SINE Alu -1 308 187 1501 88 0 0 chrX 27082839 27083031 -149891109 + AluSg/x SINE Alu 121 312 0 253 271 115 0 chrX 27083032 27083128 -149891012 + L1MC4a LINE L1 7166 7272 -536 22 0 0 0 chrX 27083130 27083152 -149890988 + AT_rich Low_complexity Low_complexity 1 22 0 24 77 0 0 chrX 27083607 27083659 -149890481 + AT_rich Low_complexity Low_complexity 1 52 0 986 155 12 6 chrX 27084214 27084422 -149889718 + AluSg/x SINE Alu 122 330 0 2227 109 3 7 chrX 27084621 27084923 -149889217 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 27084989 27085010 -149889130 + AT_rich Low_complexity Low_complexity 1 21 0 886 284 119 12 chrX 27085637 27086123 -149888017 + L1MC4 LINE L1 7346 7883 -159 1438 204 227 14 chrX 27088810 27089250 -149884890 - MLT1F LTR MaLR -8 534 1 26 50 0 0 chrX 27090480 27090520 -149883620 + AT_rich Low_complexity Low_complexity 1 40 0 2253 95 0 38 chrX 27090725 27091040 -149883100 - AluSx SINE Alu -9 303 1 302 264 70 23 chrX 27091042 27091171 -149882969 - L1MC4a LINE L1 -1904 5904 5770 201 292 0 0 chrX 27091411 27091459 -149882681 + L2 LINE L2 3262 3309 -4 1873 142 46 4 chrX 27092569 27092850 -149881290 - AluJo SINE Alu -17 295 3 2288 86 0 20 chrX 27093153 27093455 -149880685 - AluSx SINE Alu -3 309 14 2181 109 3 13 chrX 27093687 27093990 -149880150 - AluJb SINE Alu -12 300 1 1171 216 122 10 chrX 27093993 27094289 -149879851 - MLT1D LTR MaLR -176 329 1 747 267 20 40 chrX 27094367 27094405 -149879735 - LTR16C LTR ERVL -3 488 451 1725 141 48 4 chrX 27094405 27094704 -149879436 + AluJo SINE Alu 1 311 0 747 267 20 40 chrX 27094704 27094911 -149879229 - LTR16C LTR ERVL -40 451 247 * 993 238 36 8 chrX 27094908 27095156 -149878984 - MLT1C LTR MaLR -14 453 199 2259 102 3 3 chrX 27095182 27095486 -149878654 - AluSq SINE Alu -9 304 1 26 0 0 0 chrX 27095488 27095514 -149878626 + AT_rich Low_complexity Low_complexity 1 26 0 2466 94 126 5 chrX 27095677 27096058 -149878082 + MSTA LTR MaLR 1 427 -1 2206 108 0 34 chrX 27096117 27096440 -149877700 - AluSx SINE Alu 0 312 1 527 247 110 22 chrX 27096564 27096746 -149877394 - MLT1C LTR MaLR -307 198 1 314 172 47 31 chrX 27097886 27097950 -149876190 + MLT1H LTR MaLR 229 293 -256 225 228 105 0 chrX 27098005 27098062 -149876078 - LTR16C LTR ERVL -107 384 322 1939 152 9 40 chrX 27098228 27098576 -149875564 - MER1B DNA MER1_type 0 337 1 1147 152 0 0 chrX 27098588 27098752 -149875388 - AluJb SINE Alu -14 298 135 2099 139 3 3 chrX 27099134 27099435 -149874705 + AluSq SINE Alu 1 301 -12 2205 131 33 38 chrX 27099952 27100318 -149873822 - THE1B LTR MaLR 0 364 1 447 310 0 22 chrX 27100589 27100773 -149873367 + (TG)n Simple_repeat Simple_repeat 1 180 0 1040 268 84 11 chrX 27101152 27101533 -149872607 + LTR16C LTR ERVL 81 489 -2 286 200 57 14 chrX 27101879 27101949 -149872191 + L2 LINE L2 3193 3265 -7 1639 100 174 8 chrX 27102633 27102895 -149871245 - AluSg SINE Alu 0 303 2 582 194 97 29 chrX 27103299 27103474 -149870666 + LTR16C LTR ERVL 298 484 -7 2248 120 0 0 chrX 27103615 27103916 -149870224 - AluSx SINE Alu -11 301 1 239 183 174 18 chrX 27104773 27104860 -149869280 - MIR SINE MIR -44 218 116 1682 259 88 4 chrX 27105284 27105786 -149868354 - MLT1H1 LTR MaLR 0 555 12 243 0 0 0 chrX 27106587 27106614 -149867526 + (CA)n Simple_repeat Simple_repeat 1 27 0 1477 121 5 0 chrX 27106871 27107069 -149867071 - AluJb SINE Alu -8 304 106 2228 122 3 0 chrX 27107070 27107374 -149866766 + AluSx SINE Alu 1 305 -7 771 168 0 25 chrX 27107375 27107494 -149866646 - FLAM_A SINE Alu -17 116 1 1500 213 141 62 chrX 27107498 27107630 -149866510 + MLT1G1 LTR MaLR 53 173 -422 2129 209 77 62 chrX 27107630 27108242 -149865898 - MLT1E3 LTR MaLR 0 624 4 1500 213 141 62 chrX 27108242 27108611 -149865529 + MLT1G1 LTR MaLR 173 594 -1 2250 132 0 0 chrX 27109038 27109348 -149864792 - AluSx SINE Alu -2 310 1 555 250 0 0 chrX 27109460 27109588 -149864552 + AluSq/x SINE Alu 2 129 -184 331 177 0 16 chrX 27109961 27110046 -149864094 + Alu SINE Alu 226 309 0 2226 98 0 0 chrX 27110062 27110338 -149863802 + AluSx SINE Alu 5 280 -32 1853 142 35 7 chrX 27110359 27110648 -149863492 + AluJo SINE Alu 1 297 -15 661 118 59 88 chrX 27111813 27111949 -149862191 + FLAM_A SINE Alu 1 132 -1 352 264 151 31 chrX 27113453 27113612 -149860528 + L1ME3 LINE L1 5531 5708 -456 2417 91 13 0 chrX 27113614 27113952 -149860188 + AluSq SINE Alu 1 342 0 599 258 6 0 chrX 27113952 27114111 -149860029 + LTR16C LTR ERVL 332 491 0 794 279 52 64 chrX 27114124 27114547 -149859593 - L3b LINE CR1 -27 1556 1139 1103 240 92 43 chrX 27115346 27115692 -149858448 + L1ME3 LINE L1 5734 6096 -66 2161 109 37 3 chrX 27115700 27115994 -149858146 + AluSx SINE Alu 1 304 -8 5854 76 11 22 chrX 27116000 27116283 -149857857 + L1PB2 LINE L1 5321 5606 -545 2307 104 0 0 chrX 27116283 27116580 -149857560 - AluY SINE Alu -14 297 1 5854 76 11 22 chrX 27116580 27117138 -149857002 + L1PB2 LINE L1 5606 6148 -3 24 115 0 0 chrX 27117139 27117261 -149856879 + AT_rich Low_complexity Low_complexity 1 122 0 2229 112 7 0 chrX 27117261 27117555 -149856585 + AluSx SINE Alu 1 296 -16 1018 241 51 19 chrX 27117555 27117812 -149856328 - MLT1E3 LTR MaLR -210 414 150 664 99 18 9 chrX 27117813 27117924 -149856216 + (TTCC)n Simple_repeat Simple_repeat 2 113 0 1510 172 104 0 chrX 27117928 27118207 -149855933 - AluJb SINE Alu -4 308 1 2222 116 3 0 chrX 27118234 27118528 -149855612 + AluSx SINE Alu 1 295 -17 824 174 0 0 chrX 27118548 27118680 -149855460 - MLT1E3 LTR MaLR -522 132 1 371 167 17 0 chrX 27118978 27119038 -149855102 - U7 snRNA snRNA -1 62 2 1546 143 21 21 chrX 27119074 27119361 -149854779 + L1MB2 LINE L1 5883 6169 -2 1678 190 7 10 chrX 27119369 27119659 -149854481 + AluJb SINE Alu 1 289 -23 2391 145 3 3 chrX 27120305 27120670 -149853470 + MLT1A1 LTR MaLR 1 365 0 260 138 46 62 chrX 27120681 27120746 -149853394 + LTR50 LTR ERVL 727 790 -5 257 256 47 23 chrX 27120982 27121068 -149853072 + MLT1L LTR MaLR 1 88 -527 709 278 88 48 chrX 27121101 27121501 -149852639 + MLT1L LTR MaLR 200 615 0 229 265 15 91 chrX 27122132 27122264 -149851876 + L2 LINE L2 1644 1765 -1549 316 202 34 22 chrX 27122767 27122856 -149851284 + L1ME3A LINE L1 5877 5966 -204 1894 111 94 26 chrX 27122992 27123343 -149850797 + THE1C LTR MaLR 1 375 0 25 65 0 0 chrX 27123346 27123392 -149850748 + AT_rich Low_complexity Low_complexity 1 46 0 236 269 51 39 chrX 27123590 27123668 -149850472 - L2 LINE L2 -545 2769 2691 1141 141 17 0 chrX 27123671 27123848 -149850292 + AluJo SINE Alu 122 301 -11 429 168 99 20 chrX 27124255 27124356 -149849784 - L1MB8 LINE L1 -46 6132 6024 2280 134 0 6 chrX 27124356 27124670 -149849470 + AluSx SINE Alu 1 312 0 423 258 106 8 chrX 27124718 27124850 -149849290 - L1MEd LINE L1 -5673 446 302 473 193 171 101 chrX 27124868 27124923 -149849217 - L1MEd LINE L1 -5874 245 195 2419 84 0 3 chrX 27124923 27125221 -149848919 - AluSg SINE Alu -13 297 1 473 193 171 101 chrX 27125221 27125279 -149848861 - L1MEd LINE L1 -5924 195 143 2373 93 0 6 chrX 27125279 27125590 -149848550 - AluSx SINE Alu -3 309 1 473 193 171 101 chrX 27125590 27125703 -149848437 - L1MEd LINE L1 -5976 143 2 207 289 0 0 chrX 27125999 27126051 -149848089 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 654 211 0 30 chrX 27126275 27126408 -149847732 - FLAM_A SINE Alu -13 129 1 652 128 27 54 chrX 27126874 27127023 -149847117 - L1MA8 LINE L1 0 6291 6147 1031 95 12 35 chrX 27127442 27127611 -149846529 + L1MB3 LINE L1 6011 6175 -8 789 147 22 29 chrX 27129758 27129894 -149844246 + AluJo SINE Alu 2 136 -176 26 93 0 0 chrX 27130148 27130223 -149843917 + AT_rich Low_complexity Low_complexity 1 75 0 609 240 133 5 chrX 27130956 27131152 -149842988 - L1ME3 LINE L1 0 6162 5942 2287 101 0 3 chrX 27131403 27131699 -149842441 - AluSx SINE Alu -17 295 1 526 239 80 52 chrX 27132575 27132864 -149841276 - L1MEd LINE L1 -3000 3129 2833 502 213 60 105 chrX 27132862 27133177 -149840963 - HAL1 LINE L1 -133 2374 2074 * 1454 131 0 0 chrX 27133372 27133609 -149840531 - L1MA7 LINE L1 0 6291 6055 2162 122 55 50 chrX 27133609 27133779 -149840361 + L1MA7 LINE L1 5618 5786 -505 2206 116 0 28 chrX 27133779 27134099 -149840041 + AluSx SINE Alu 1 311 -1 2162 122 55 50 chrX 27134099 27134330 -149839810 + L1MA7 LINE L1 5786 6021 -270 2087 129 3 0 chrX 27134335 27134629 -149839511 - AluSx SINE Alu -17 295 1 317 317 18 18 chrX 27134639 27134806 -149839334 - L1MEd LINE L1 -3303 2826 2660 283 234 108 19 chrX 27134868 27135026 -149839114 + L1M4 LINE L1 2795 2966 -3180 870 118 15 37 chrX 27135086 27135222 -149838918 - FLAM_C SINE Alu 0 133 1 306 305 15 46 chrX 27135612 27135809 -149838331 - L1MEd LINE L1 -5917 202 12 21 0 0 0 chrX 27136203 27136224 -149837916 + AT_rich Low_complexity Low_complexity 1 21 0 1698 184 4 0 chrX 27136917 27137195 -149836945 + AluJb SINE Alu 1 279 -33 216 0 0 0 chrX 27137200 27137224 -149836916 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1608 148 16 59 chrX 27137239 27137542 -149836598 + AluJo SINE Alu 1 290 -22 833 143 30 8 chrX 27138211 27138344 -149835796 - AluJo SINE Alu -176 136 1 265 178 22 0 chrX 27138825 27138870 -149835270 + MER57A LTR ERV1 291 336 -67 787 171 28 74 chrX 27139713 27139889 -149834251 - AluJo SINE Alu -22 290 123 2219 117 0 0 chrX 27140308 27140607 -149833533 - AluSx SINE Alu -13 299 1 340 273 43 121 chrX 27140775 27141031 -149833109 - L3 LINE CR1 -7 1570 1335 513 202 34 8 chrX 27141351 27141470 -149832670 + L2 LINE L2 3192 3313 0 325 237 62 62 chrX 27141498 27141675 -149832465 + L2 LINE L2 1634 1810 -1504 773 232 11 11 chrX 27141719 27141896 -149832244 - AluSg/x SINE Alu -9 301 125 841 174 45 6 chrX 27142485 27142663 -149831477 - MER53 DNA DNA -4 185 1 739 179 0 0 chrX 27143358 27143475 -149830665 + FLAM_C SINE Alu 1 117 -16 2397 87 0 0 chrX 27143796 27144094 -149830046 - AluSq SINE Alu -14 299 2 21 57 0 0 chrX 27144096 27144131 -149830009 + AT_rich Low_complexity Low_complexity 1 35 0 185 323 48 16 chrX 27144614 27144676 -149829464 - MIR SINE MIR -60 148 85 1681 171 27 34 chrX 27145145 27145518 -149828622 + L1MC3 LINE L1 7179 7687 -308 2150 131 0 3 chrX 27145518 27145815 -149828325 + AluSx SINE Alu 1 296 -16 1155 159 0 0 chrX 27145815 27145991 -149828149 + AluJb SINE Alu 134 309 -3 229 264 91 83 chrX 27146031 27146273 -149827867 + L1ME3A LINE L1 5927 6170 0 2444 95 0 0 chrX 27146962 27147266 -149826874 - AluSx SINE Alu -8 304 1 1953 82 0 0 chrX 27147652 27147929 -149826211 - AluSx SINE Alu 0 331 55 3631 119 18 18 chrX 27147945 27148445 -149825695 - L1MB3 LINE L1 -2 6181 5679 2164 125 0 32 chrX 27148445 27148758 -149825382 + AluSx SINE Alu 1 303 -9 3631 119 18 18 chrX 27148758 27148826 -149825314 - L1MB3 LINE L1 -503 5680 5613 2363 158 21 3 chrX 27148837 27149217 -149824923 - MSTD LTR MaLR -9 387 1 850 152 0 14 chrX 27149217 27149362 -149824778 - L1MB3 LINE L1 -565 5618 5476 243 122 0 0 chrX 27149381 27149430 -149824710 - L1MB3 LINE L1 -676 5495 5447 228 182 0 0 chrX 27149533 27149577 -149824563 + T-rich Low_complexity Low_complexity 2 45 0 1628 117 120 15 chrX 27149655 27149921 -149824219 - AluSg SINE Alu -16 294 1 1910 69 138 0 chrX 27149924 27150185 -149823955 - AluSq SINE Alu -6 297 1 798 120 0 38 chrX 27150190 27150323 -149823817 - FLAM_C SINE Alu -5 128 1 801 206 11 22 chrX 27150500 27150680 -149823460 + L1ME3 LINE L1 5950 6127 -35 306 132 0 0 chrX 27151059 27151112 -149823028 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 4238 111 34 2 chrX 27151190 27151805 -149822335 + MER41B LTR ERV1 1 635 0 836 167 71 6 chrX 27152814 27152982 -149821158 - L1MC3 LINE L1 -8 7777 7599 1297 149 0 0 chrX 27152982 27153177 -149820963 - AluSg/x SINE Alu -11 301 107 1257 199 26 132 chrX 27153177 27153736 -149820404 - MLT1G1 LTR MaLR -78 477 1 23 33 0 0 chrX 27153845 27153875 -149820265 + AT_rich Low_complexity Low_complexity 1 30 0 2264 117 0 13 chrX 27153942 27154258 -149819882 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 27154353 27154376 -149819764 + AT_rich Low_complexity Low_complexity 1 23 0 781 170 0 30 chrX 27154434 27154569 -149819571 + FLAM_C SINE Alu 3 133 0 279 298 0 0 chrX 27155285 27155369 -149818771 - L1MC/D LINE L1 -2026 5782 5699 210 37 0 0 chrX 27155431 27155458 -149818682 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2079 115 4 0 chrX 27155461 27155739 -149818401 - AluSx SINE Alu -33 279 1 2386 100 0 3 chrX 27156641 27156952 -149817188 - AluSq SINE Alu -3 310 1 628 255 152 41 chrX 27157146 27157168 -149816972 + L1MC4a LINE L1 5687 5705 -2103 1945 141 70 6 chrX 27157168 27157495 -149816645 + MER7A DNA MER2_type 1 346 0 628 255 152 41 chrX 27157495 27157907 -149816233 + L1MC4a LINE L1 5705 6169 -1639 2162 124 0 0 chrX 27157914 27158204 -149815936 + AluSx SINE Alu 1 290 -22 1935 119 7 20 chrX 27158606 27158900 -149815240 - AluSq SINE Alu -23 290 1 2063 134 7 0 chrX 27159180 27159471 -149814669 + AluJo SINE Alu 3 295 -17 1973 129 24 14 chrX 27159474 27159769 -149814371 + AluSx SINE Alu 1 298 -14 722 233 70 73 chrX 27159778 27160065 -149814075 + MLT1G LTR MaLR 110 395 -195 311 333 63 9 chrX 27160076 27160298 -149813842 + L1M4 LINE L1 2644 2877 -3269 688 144 63 0 chrX 27160324 27160435 -149813705 + AluJ SINE Alu 1 118 -184 2246 108 16 0 chrX 27160526 27160831 -149813309 + AluSx SINE Alu 1 310 -2 1147 153 58 2 chrX 27160870 27161112 -149813028 + AluJb SINE Alu 1 308 -4 1042 166 0 28 chrX 27161390 27161408 -149812732 - AluJb SINE Alu 0 312 295 2448 93 0 3 chrX 27161408 27161718 -149812422 - AluSq SINE Alu -4 309 1 1042 166 0 28 chrX 27161718 27161880 -149812260 - AluJb SINE Alu -17 295 137 2445 89 0 0 chrX 27162300 27162604 -149811536 + AluSx SINE Alu 1 304 -8 1789 107 34 4 chrX 27162658 27162920 -149811220 + AluSx SINE Alu 3 272 -40 601 164 0 0 chrX 27162981 27163085 -149811055 - AluSp SINE Alu -7 306 203 1158 99 13 0 chrX 27163090 27163242 -149810898 - AluSp SINE Alu -158 155 2 2325 107 0 22 chrX 27163391 27163710 -149810430 - AluSx SINE Alu 0 312 1 212 330 10 31 chrX 27163796 27163893 -149810247 - MIR SINE MIR -58 204 110 238 182 36 36 chrX 27164135 27164190 -149809950 - MLT1K LTR MaLR -411 177 123 551 214 38 30 chrX 27164255 27164386 -149809754 - FLAM_C SINE Alu -1 132 1 711 216 16 42 chrX 27164497 27164538 -149809602 + MLT1C LTR MaLR 1 42 -425 569 69 0 92 chrX 27164538 27164625 -149809515 + MADE1 DNA Mariner 1 79 -1 711 216 16 42 chrX 27164625 27164832 -149809308 + MLT1C LTR MaLR 42 328 -139 729 131 0 0 chrX 27364834 27364941 -149609199 + AluSp/q SINE Alu 198 304 -9 3093 124 51 42 chrX 27364944 27365150 -149608990 + MER21B LTR ERV1 308 511 -352 2464 48 28 3 chrX 27365150 27365441 -149608699 - AluY SINE Alu -13 298 1 3093 124 51 42 chrX 27365441 27365784 -149608356 + MER21B LTR ERV1 511 862 -1 206 229 0 0 chrX 27365804 27365820 -149608320 + A-rich Low_complexity Low_complexity 1 16 -32 2290 112 3 6 chrX 27365820 27366133 -149608007 + AluSx SINE Alu 1 312 0 206 229 0 0 chrX 27366133 27366164 -149607976 + A-rich Low_complexity Low_complexity 15 48 0 2426 102 0 0 chrX 27366587 27366892 -149607248 + AluSx SINE Alu 1 305 -7 361 245 48 80 chrX 27366970 27367271 -149606869 - LTR38B LTR ERV1 0 610 263 468 230 26 142 chrX 27367321 27367630 -149606510 - LTR38B LTR ERV1 -326 284 12 1780 161 7 0 chrX 27367630 27367904 -149606236 - AluJb SINE Alu -36 276 1 1843 137 20 20 chrX 27367955 27368255 -149605885 + AluJo SINE Alu 1 300 -12 2268 102 0 3 chrX 27368328 27368649 -149605491 + AluSx SINE Alu 1 320 0 2526 64 6 13 chrX 27368650 27368963 -149605177 + AluY SINE Alu 1 311 0 861 76 0 0 chrX 27368973 27369078 -149605062 + FLAM_C SINE Alu 1 105 -38 478 145 12 24 chrX 27369414 27369497 -149604643 - AluS SINE Alu -229 83 2 1640 174 10 13 chrX 27369497 27369807 -149604333 + MER65C LTR ERV1 153 461 0 1265 193 15 45 chrX 27369807 27369943 -149604197 + MER21A LTR ERV1 203 329 -602 2489 88 3 0 chrX 27369943 27370249 -149603891 - AluSx SINE Alu -5 307 1 1265 193 15 45 chrX 27370249 27370377 -149603763 + MER21A LTR ERV1 329 459 -472 1639 149 0 4 chrX 27370391 27370632 -149603508 + AluJo SINE Alu 1 240 -72 471 81 68 0 chrX 27370659 27370733 -149603407 + L1MB3 LINE L1 6096 6174 -9 2399 82 7 23 chrX 27370747 27371053 -149603087 + AluSc SINE Alu 1 301 -8 789 249 185 25 chrX 27371087 27371481 -149602659 + MLT1H LTR MaLR 40 496 -53 938 110 0 8 chrX 27371481 27371608 -149602532 + AluJo SINE Alu 13 138 -174 1883 138 7 7 chrX 27371608 27371897 -149602243 + AluJo SINE Alu 13 301 -11 241 220 0 0 chrX 27371898 27371957 -149602183 + MLT1H LTR MaLR 487 545 -4 1790 93 86 32 chrX 27372076 27372355 -149601785 - AluSx SINE Alu -18 294 1 247 288 0 27 chrX 27373312 27373385 -149600755 + (CATG)n Simple_repeat Simple_repeat 1 71 0 3187 177 46 70 chrX 27373385 27373456 -149600684 - MER69 DNA AcHobo -2 2524 2453 983 110 0 22 chrX 27373456 27373592 -149600548 + FLAM_C SINE Alu 1 133 0 3187 177 46 70 chrX 27373592 27373884 -149600256 - MER69 DNA AcHobo -73 2453 2155 2417 92 0 13 chrX 27373884 27374198 -149599942 + AluSx SINE Alu 1 310 -2 3187 177 46 70 chrX 27374198 27374726 -149599414 - MER69 DNA AcHobo -371 2155 1654 1912 153 3 26 chrX 27374811 27375124 -149599016 - AluJo SINE Alu 0 312 7 673 196 367 0 chrX 27375131 27375371 -149598769 - MER69 DNA AcHobo -1869 657 330 238 224 0 0 chrX 27375481 27375530 -149598610 - MER69 DNA AcHobo -2457 69 21 1925 132 14 0 chrX 27375557 27375837 -149598303 - AluSx SINE Alu -13 299 16 2502 51 3 3 chrX 27375838 27376131 -149598009 - AluSp SINE Alu -4 309 17 555 96 39 10 chrX 27376339 27376443 -149597697 + CT-rich Low_complexity Low_complexity 4 110 0 1650 157 50 4 chrX 27376450 27376712 -149597428 - AluJb SINE Alu -38 274 1 293 111 0 111 chrX 27376732 27376762 -149597378 - MER39 LTR ERV1 -371 336 315 2280 103 3 3 chrX 27376762 27377062 -149597078 - AluSc SINE Alu -9 300 1 293 111 0 111 chrX 27377062 27377094 -149597046 - MER39 LTR ERV1 -392 315 281 281 26 0 0 chrX 27377093 27377131 -149597009 - MSTB1 LTR MaLR -45 387 350 * 1500 151 198 22 chrX 27377169 27377527 -149596613 + MSTA LTR MaLR 4 424 -4 429 117 115 81 chrX 27377538 27377648 -149596492 - MER21A LTR ERV1 -541 166 70 2195 122 0 7 chrX 27377716 27378045 -149596095 - AluSx SINE Alu 0 327 1 347 153 0 28 chrX 27378091 27378163 -149595977 - MER21A LTR ERV1 -861 70 1 2391 103 3 0 chrX 27378232 27378543 -149595597 + AluSp SINE Alu 1 312 -1 1968 144 11 3 chrX 27378546 27378893 -149595247 - L1MB3 LINE L1 -16 6167 5818 1341 118 11 0 chrX 27378929 27379107 -149595033 + AluJb SINE Alu 121 300 -12 375 128 139 35 chrX 27379108 27379194 -149594946 - L1MB3 LINE L1 -356 5824 5730 2149 128 20 0 chrX 27379207 27379504 -149594636 - AluSx SINE Alu -8 304 2 377 317 60 27 chrX 27380336 27380519 -149593621 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 27380544 27380599 -149593541 + polypurine Low_complexity Low_complexity 3 57 0 236 322 35 49 chrX 27380603 27380697 -149593443 + L1M4 LINE L1 3520 3613 -2533 2242 97 33 3 chrX 27380697 27380997 -149593143 + AluSg SINE Alu 1 309 -1 236 322 35 49 chrX 27380997 27381045 -149593095 + L1M4 LINE L1 3613 3660 -2486 706 67 0 0 chrX 27381049 27381139 -149593001 + 5S rRNA rRNA 1 90 -31 522 293 26 4 chrX 27381139 27381368 -149592772 + L1M4 LINE L1 3652 3885 -2261 256 208 21 0 chrX 27381394 27381442 -149592698 + MIR SINE MIR 45 93 -115 264 280 56 56 chrX 27381461 27381586 -149592554 + MIR3 SINE MIR 47 171 -37 966 204 47 50 chrX 27381811 27381862 -149592278 + L1MC5 LINE L1 7256 7306 -655 1846 66 70 4 chrX 27381862 27382104 -149592036 + AluY SINE Alu 37 294 -17 966 204 47 50 chrX 27382104 27382128 -149592012 + L1MC5 LINE L1 7306 7329 -632 1075 149 4 115 chrX 27382128 27382198 -149591942 - MER3 DNA MER1_type 0 209 133 1990 105 16 56 chrX 27382198 27382346 -149591794 + AluSx SINE Alu 1 132 -180 2366 91 0 7 chrX 27382346 27382644 -149591496 + AluSp SINE Alu 1 296 -17 1990 105 16 56 chrX 27382644 27382799 -149591341 + AluSx SINE Alu 132 292 -20 1075 149 4 115 chrX 27382799 27382963 -149591177 - MER3 DNA MER1_type -76 133 1 966 204 47 50 chrX 27382963 27383229 -149590911 + L1MC5 LINE L1 7329 7597 -364 1172 96 0 0 chrX 27383233 27383379 -149590761 + AluSq/x SINE Alu 1 146 -167 1785 65 60 155 chrX 27383379 27383535 -149590605 - LTR66 LTR ERVL 0 610 441 459 0 0 0 chrX 27383535 27383586 -149590554 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1785 65 60 155 chrX 27383586 27383815 -149590325 - LTR66 LTR ERVL -169 441 262 2362 84 3 0 chrX 27385250 27385557 -149588583 + AluSx SINE Alu 1 308 0 889 127 8 8 chrX 27385569 27385703 -149588437 + AluJo SINE Alu 1 134 -178 784 82 65 80 chrX 27385714 27385897 -149588243 + L1MA2 LINE L1 5938 6127 -177 1797 143 0 39 chrX 27385897 27386183 -149587957 + AluJb SINE Alu 18 292 -20 2258 111 0 3 chrX 27386243 27386541 -149587599 - AluSx SINE Alu -3 309 13 2344 176 17 28 chrX 27386557 27387024 -149587116 - L1MB5 LINE L1 0 6174 5713 2485 89 0 0 chrX 27387483 27387787 -149586353 - AluSx SINE Alu -8 304 1 2262 108 0 16 chrX 27388458 27388774 -149585366 + AluSx SINE Alu 1 311 -1 2320 75 0 0 chrX 27388834 27389139 -149585001 + AluSg SINE Alu 1 305 0 916 143 0 0 chrX 27389200 27389326 -149584814 + AluSq/x SINE Alu 1 126 -187 2439 65 0 3 chrX 27390090 27390384 -149583756 + AluY SINE Alu 2 294 -17 2375 74 24 0 chrX 27390786 27391083 -149583057 - AluSp SINE Alu -9 304 1 834 214 97 137 chrX 27391208 27391376 -149582764 + L1ME4a LINE L1 5476 5649 -472 2363 98 7 3 chrX 27391376 27391673 -149582467 + AluSc SINE Alu 1 298 -11 834 214 97 137 chrX 27391673 27391754 -149582386 + L1ME4a LINE L1 5649 5732 -389 657 175 0 33 chrX 27391754 27391874 -149582266 + FLAM_A SINE Alu 1 116 -17 834 214 97 137 chrX 27391874 27392210 -149581930 + L1ME4a LINE L1 5732 6034 -87 1953 154 3 3 chrX 27392210 27392508 -149581632 - AluSx SINE Alu -14 298 1 834 214 97 137 chrX 27392508 27392592 -149581548 + L1ME4a LINE L1 6034 6120 -1 1137 133 0 0 chrX 27392847 27393013 -149581127 - AluSg/x SINE Alu -1 311 146 269 83 0 0 chrX 27393013 27393049 -149581091 - Alu SINE Alu -265 37 2 247 154 0 0 chrX 27393016 27393055 -149581085 - AluSg/x SINE Alu -133 167 129 * 233 305 166 44 chrX 27393793 27394154 -149579986 - L2 LINE L2 -641 2673 2269 * 309 273 107 101 chrX 27394152 27394460 -149579680 + L3 LINE CR1 934 1243 -334 2304 105 3 0 chrX 27395317 27395612 -149578528 + AluSx SINE Alu 1 296 -16 1286 214 87 77 chrX 27396351 27396752 -149577388 - MLT2D LTR ERVL -8 406 2 2136 142 0 0 chrX 27396777 27397086 -149577054 - AluSx SINE Alu -3 309 1 233 125 0 0 chrX 27397492 27397540 -149576600 + Alu SINE Alu 255 302 0 2084 114 0 71 chrX 27397566 27397891 -149576249 - AluSx SINE Alu -10 302 1 2374 87 0 7 chrX 27398250 27398549 -149575591 + AluSx SINE Alu 1 297 -15 611 252 174 62 chrX 27398890 27399255 -149574885 + MLT1H1 LTR MaLR 70 493 -62 2320 107 0 3 chrX 27399255 27399564 -149574576 + AluSg SINE Alu 1 308 -2 611 252 174 62 chrX 27399564 27399634 -149574506 + MLT1H1 LTR MaLR 493 554 -1 1852 156 29 16 chrX 27399762 27400069 -149574071 + AluJb SINE Alu 2 312 0 2155 89 64 0 chrX 27400376 27400658 -149573482 - AluSx SINE Alu -12 300 1 669 213 0 0 chrX 27401013 27401135 -149573005 + FLAM_A SINE Alu 1 122 -11 2020 107 29 58 chrX 27401149 27401457 -149572683 + AluSq SINE Alu 3 301 -12 184 171 73 0 chrX 27401572 27401613 -149572527 + L2 LINE L2 3229 3272 0 2032 119 9 25 chrX 27401812 27402130 -149572010 + AluSq SINE Alu 1 313 0 2113 102 0 74 chrX 27402689 27402839 -149571301 + AluSx SINE Alu 1 116 -196 2365 107 0 0 chrX 27402839 27403148 -149570992 + AluSg SINE Alu 1 309 -1 2113 102 0 74 chrX 27403148 27403322 -149570818 + AluSx SINE Alu 116 301 -11 1139 127 6 0 chrX 27403459 27403625 -149570515 + FRAM SINE Alu 4 170 -6 778 70 0 0 chrX 27403710 27403810 -149570330 + HY3 scRNA scRNA 1 100 -1 267 173 0 0 chrX 27403810 27403862 -149570278 + A-rich Low_complexity Low_complexity 1 52 0 2559 64 3 0 chrX 27404111 27404408 -149569732 + AluSp SINE Alu 1 298 -15 2421 94 0 0 chrX 27404431 27404728 -149569412 + AluSx SINE Alu 1 297 -15 3136 194 36 57 chrX 27404831 27405470 -149568670 - L1MD2 LINE L1 -115 6244 5593 585 149 0 0 chrX 27405470 27405557 -149568583 + AluJ/FLAM SINE Alu 13 99 -213 240 86 0 0 chrX 27405563 27405598 -149568542 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1654 127 141 14 chrX 27405598 27405874 -149568266 + AluSx SINE Alu 2 312 0 3136 194 36 57 chrX 27405874 27406157 -149567983 - L1MD2 LINE L1 -769 5590 5301 1376 106 0 0 chrX 27406166 27406346 -149567794 - AluSp SINE Alu -4 309 130 680 156 57 0 chrX 27406346 27406486 -149567654 - L1MD2 LINE L1 -856 5290 5148 1859 154 6 35 chrX 27406525 27406844 -149567296 + AluJo SINE Alu 1 310 -2 444 271 62 23 chrX 27406913 27407042 -149567098 - L2 LINE L2 0 3313 3180 2288 102 3 0 chrX 27407042 27407335 -149566805 - AluSx SINE Alu -18 294 1 1145 140 9 72 chrX 27408086 27408308 -149565832 - AluSg/x SINE Alu 0 310 103 2434 88 0 0 chrX 27408337 27408634 -149565506 - AluSq SINE Alu -16 297 1 2097 104 18 0 chrX 27409035 27409313 -149564827 + AluSx SINE Alu 18 300 -12 2384 94 0 10 chrX 27410985 27411284 -149562856 - AluSx SINE Alu -10 302 7 31 0 0 0 chrX 27411402 27411433 -149562707 + AT_rich Low_complexity Low_complexity 1 31 0 873 117 58 0 chrX 27411433 27411553 -149562587 - FLAM_C SINE Alu -16 127 1 260 254 0 0 chrX 27411560 27411615 -149562525 - MIR SINE MIR -124 138 84 2372 105 0 16 chrX 27412186 27412501 -149561639 - AluSx SINE Alu -2 310 1 598 186 68 0 chrX 27412636 27412754 -149561386 + Charlie8 DNA MER1_type 76 201 -2216 2046 144 0 16 chrX 27412990 27413296 -149560844 + AluJo SINE Alu 1 301 -11 2267 103 7 7 chrX 27413381 27413682 -149560458 + AluSg SINE Alu 1 301 -9 331 136 0 0 chrX 27413767 27413823 -149560317 - MLT2D LTR ERVL 0 414 368 339 96 0 0 chrX 27413834 27413886 -149560254 + (GA)n Simple_repeat Simple_repeat 1 52 0 1970 137 27 51 chrX 27413888 27414172 -149559968 - MLT2D LTR ERVL -48 366 92 2496 82 3 0 chrX 27414172 27414476 -149559664 + AluSx SINE Alu 1 305 -7 1970 137 27 51 chrX 27414476 27414564 -149559576 - MLT2D LTR ERVL -322 92 3 2283 104 0 13 chrX 27414955 27415264 -149558876 - AluSq SINE Alu -7 306 2 236 56 0 0 chrX 27415266 27415302 -149558838 - AluJo SINE Alu -3 299 264 1298 145 16 0 chrX 27415302 27415488 -149558652 - AluJo SINE Alu -123 189 1 981 173 52 11 chrX 27415514 27415705 -149558435 - AluJo SINE Alu 0 312 114 2537 71 7 0 chrX 27415884 27416194 -149557946 - AluSp SINE Alu 0 313 2 352 215 72 25 chrX 27416236 27416357 -149557783 - MLT1H LTR MaLR -4 545 305 476 273 66 27 chrX 27416384 27416567 -149557573 - MLT1H LTR MaLR -258 291 102 2379 99 13 0 chrX 27416661 27416963 -149557177 - AluSx SINE Alu -6 306 1 192 77 0 0 chrX 27417010 27417036 -149557104 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1899 174 7 3 chrX 27417038 27417343 -149556797 - AluJo SINE Alu -6 306 1 28 29 0 0 chrX 27417355 27417390 -149556750 + AT_rich Low_complexity Low_complexity 1 35 0 2079 94 65 0 chrX 27417390 27417665 -149556475 - AluSp SINE Alu -20 293 1 2178 138 0 19 chrX 27417675 27417993 -149556147 - AluSx SINE Alu 0 312 1 258 32 0 0 chrX 27418000 27418031 -149556109 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chrX 27418030 27418052 -149556088 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 2134 95 10 44 chrX 27418052 27418201 -149555939 - AluSx SINE Alu -28 284 148 2444 92 3 0 chrX 27418201 27418507 -149555633 - AluSp SINE Alu -6 307 1 2134 95 10 44 chrX 27418507 27418651 -149555489 - AluSx SINE Alu -164 148 1 4224 126 10 27 chrX 27418658 27418937 -149555203 - L1MC1 LINE L1 -15 6318 6036 2040 156 0 6 chrX 27418937 27419251 -149554889 - AluJb SINE Alu 0 312 1 4224 126 10 27 chrX 27419251 27419672 -149554468 - L1MC1 LINE L1 -297 6036 5630 2324 98 0 3 chrX 27419755 27420051 -149554089 - AluSx SINE Alu -17 295 1 1179 145 0 6 chrX 27420172 27420351 -149553789 + AluSg/x SINE Alu 133 310 0 2553 69 3 7 chrX 27420553 27420859 -149553281 + AluSp SINE Alu 1 305 -8 2124 129 26 19 chrX 27421289 27421496 -149552644 - AluJb SINE Alu 0 312 101 1906 103 106 32 chrX 27421496 27421835 -149552305 - THE1B LTR MaLR 0 364 1 2124 129 26 19 chrX 27421835 27421937 -149552203 - AluJb SINE Alu -211 101 1 2536 64 6 13 chrX 27421947 27422260 -149551880 - AluY SINE Alu 0 311 1 194 0 39 0 chrX 27422261 27422287 -149551853 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 575 140 0 28 chrX 27422287 27422394 -149551746 - AluSg/x SINE Alu -18 294 191 2332 91 0 0 chrX 27422525 27422858 -149551282 + AluSq SINE Alu 1 333 0 780 218 128 13 chrX 27422998 27423232 -149550908 + L1ME3A LINE L1 5890 6150 -20 1928 131 44 13 chrX 27423530 27423828 -149550312 + AluJo SINE Alu 1 307 -5 2465 97 3 0 chrX 27423828 27424137 -149550003 + AluSx SINE Alu 1 310 -2 553 185 179 0 chrX 27424461 27424612 -149549528 - MER5A DNA MER1_type -8 181 4 1802 139 44 41 chrX 27424844 27425139 -149549001 - AluJo SINE Alu -14 298 3 1880 130 29 14 chrX 27425506 27425640 -149548500 + AluSx SINE Alu 3 134 -172 2341 115 0 6 chrX 27425640 27425953 -149548187 + AluSx SINE Alu 1 311 -1 1880 130 29 14 chrX 27425953 27426118 -149548022 + AluSx SINE Alu 134 306 0 1766 162 8 35 chrX 27426254 27426630 -149547510 - pTR5 LTR ERV1 -1331 1107 742 341 271 135 23 chrX 27426642 27426775 -149547365 - MLT1J LTR MaLR -331 180 33 1458 182 111 14 chrX 27426863 27427232 -149546908 + L1M4 LINE L1 681 1085 -5457 374 119 92 73 chrX 27427236 27427312 -149546828 + L1MB8 LINE L1 6068 6148 -30 2201 118 3 0 chrX 27427312 27427616 -149546524 - AluSx SINE Alu -7 305 1 374 119 92 73 chrX 27427616 27427648 -149546492 + L1MB8 LINE L1 6148 6178 0 2457 82 3 9 chrX 27427664 27427979 -149546161 + AluSq SINE Alu 1 313 0 626 150 0 10 chrX 27427991 27428091 -149546049 + AluJb SINE Alu 37 135 -177 2095 132 3 0 chrX 27428091 27428379 -149545761 + AluSx SINE Alu 1 289 -23 327 245 21 32 chrX 27428391 27428485 -149545655 + L1ME1 LINE L1 5876 5968 -198 545 217 9 0 chrX 27428485 27428591 -149545549 + FLAM_C SINE Alu 2 108 -35 21 36 0 0 chrX 27428620 27428648 -149545492 + AT_rich Low_complexity Low_complexity 1 28 0 381 22 0 0 chrX 27428978 27429024 -149545116 + (CA)n Simple_repeat Simple_repeat 2 47 0 2269 110 0 0 chrX 27429838 27430130 -149544010 + AluSx SINE Alu 1 292 -20 1190 115 13 0 chrX 27430179 27430335 -149543805 + AluSg/x SINE Alu 139 296 -14 2374 87 13 3 chrX 27430338 27430647 -149543493 + AluSp SINE Alu 1 312 -1 1939 144 11 3 chrX 27430650 27430997 -149543143 - L1MB3 LINE L1 -16 6167 5818 1342 118 11 0 chrX 27431033 27431211 -149542929 + AluJb SINE Alu 121 300 -12 373 163 105 0 chrX 27431212 27431298 -149542842 - L1MB3 LINE L1 -356 5824 5730 2134 131 20 0 chrX 27431311 27431608 -149542532 - AluSx SINE Alu -8 304 2 375 317 60 27 chrX 27432440 27432623 -149541517 + L1M4 LINE L1 3318 3506 -2640 264 273 0 0 chrX 27432648 27432703 -149541437 + polypurine Low_complexity Low_complexity 3 57 0 259 308 35 49 chrX 27432707 27432801 -149541339 + L1M4 LINE L1 3520 3613 -2533 2245 97 33 3 chrX 27432801 27433101 -149541039 + AluSg SINE Alu 1 309 -1 259 308 35 49 chrX 27433101 27433149 -149540991 + L1M4 LINE L1 3613 3660 -2486 715 67 0 0 chrX 27433153 27433243 -149540897 + 5S rRNA rRNA 1 90 -31 536 293 26 4 chrX 27433243 27433472 -149540668 + L1M4 LINE L1 3652 3885 -2261 239 208 21 0 chrX 27433498 27433546 -149540594 + MIR SINE MIR 45 93 -115 233 269 59 59 chrX 27433565 27433684 -149540456 + MIR3 SINE MIR 47 165 -43 981 204 47 50 chrX 27433914 27433965 -149540175 + L1MC5 LINE L1 7256 7306 -655 1858 66 70 4 chrX 27433965 27434207 -149539933 + AluY SINE Alu 37 294 -17 981 204 47 50 chrX 27434207 27434231 -149539909 + L1MC5 LINE L1 7306 7329 -632 1009 149 4 115 chrX 27434231 27434301 -149539839 - MER3 DNA MER1_type 0 209 133 2001 105 16 56 chrX 27434301 27434449 -149539691 + AluSx SINE Alu 1 132 -180 2373 91 0 7 chrX 27434449 27434747 -149539393 + AluSp SINE Alu 1 296 -17 2001 105 16 56 chrX 27434747 27434902 -149539238 + AluSx SINE Alu 132 292 -20 1009 149 4 115 chrX 27434902 27435066 -149539074 - MER3 DNA MER1_type -76 133 1 981 204 47 50 chrX 27435066 27435332 -149538808 + L1MC5 LINE L1 7329 7597 -364 1099 83 14 7 chrX 27435336 27435481 -149538659 + AluSx SINE Alu 1 146 -166 3755 60 35 106 chrX 27435481 27435637 -149538503 - LTR66 LTR ERVL 0 610 445 459 0 0 0 chrX 27435637 27435688 -149538452 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3755 60 35 106 chrX 27435688 27436013 -149538127 - LTR66 LTR ERVL -165 445 184 2312 78 34 0 chrX 27436013 27436306 -149537834 - AluSc SINE Alu -3 306 4 3755 60 35 106 chrX 27436306 27436473 -149537667 - LTR66 LTR ERVL -426 184 7 2217 112 3 3 chrX 27436475 27436770 -149537370 + AluSq SINE Alu 3 297 -16 1308 101 0 6 chrX 27436794 27436962 -149537178 + AluSx SINE Alu 142 308 -4 845 199 56 53 chrX 27436969 27437195 -149536945 + L1MC5 LINE L1 7603 7832 -129 1986 134 33 3 chrX 27437195 27437494 -149536646 - AluJo SINE Alu -4 308 1 845 199 56 53 chrX 27437494 27437589 -149536551 + L1MC5 LINE L1 7832 7925 -36 1934 139 0 60 chrX 27437597 27437913 -149536227 + AluJb SINE Alu 1 297 -15 2263 111 3 3 chrX 27438103 27438409 -149535731 + AluSx SINE Alu 1 306 -6 183 293 93 13 chrX 27438465 27438540 -149535600 + L3 LINE CR1 1092 1172 -405 1044 269 51 20 chrX 27438759 27439150 -149534990 + LTR16A1 LTR ERVL 55 457 0 2166 84 32 29 chrX 27439505 27439813 -149534327 - AluSc SINE Alu 0 309 1 2341 78 7 10 chrX 27439818 27440113 -149534027 - AluSq SINE Alu -19 294 1 308 136 0 0 chrX 27440121 27440165 -149533975 + AluS SINE Alu 14 57 -246 268 254 56 8 chrX 27440389 27440515 -149533625 + AluSc SINE Alu 137 268 -31 1110 169 10 19 chrX 27440581 27440788 -149533352 + AluJb SINE Alu 84 288 -24 585 263 149 19 chrX 27440794 27440987 -149533153 + HERVL LTR ERVL 2951 3188 -2466 2425 91 10 0 chrX 27440987 27441294 -149532846 + AluSx SINE Alu 1 310 -2 585 263 149 19 chrX 27441294 27441362 -149532778 + HERVL LTR ERVL 3188 3246 -2408 255 291 35 0 chrX 27441631 27441717 -149532423 + AluYb8 SINE Alu 119 207 -101 2622 55 3 3 chrX 27441743 27442050 -149532090 + AluSp SINE Alu 2 308 -5 204 125 0 0 chrX 27442057 27442089 -149532051 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2035 135 13 13 chrX 27442097 27442409 -149531731 + AluJo SINE Alu 1 312 0 2298 113 3 0 chrX 27442434 27442736 -149531404 + AluSx SINE Alu 1 303 -9 2364 136 66 11 chrX 27443376 27443818 -149530322 + L1MC1 LINE L1 5868 6333 0 277 139 47 12 chrX 27444744 27444830 -149529310 + CT-rich Low_complexity Low_complexity 2 90 0 23 0 0 0 chrX 27445033 27445056 -149529084 + GC_rich Low_complexity Low_complexity 1 23 0 2564 40 17 0 chrX 27445875 27446171 -149527969 + AluY SINE Alu 1 301 -10 804 107 0 0 chrX 27446395 27446498 -149527642 + AluJb SINE Alu 1 103 -209 240 86 0 0 chrX 27446500 27446535 -149527605 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 1989 105 30 17 chrX 27446535 27446830 -149527310 + AluSx SINE Alu 2 300 -12 2410 73 7 7 chrX 27447204 27447506 -149526634 + AluSp SINE Alu 1 302 -11 1138 101 7 0 chrX 27448124 27448273 -149525867 - AluSg/x SINE Alu -22 290 141 443 139 0 13 chrX 27448275 27448354 -149525786 - AluJ/FLAM SINE Alu -233 79 2 259 278 41 41 chrX 27448361 27448458 -149525682 - MIR SINE MIR -51 211 115 1131 49 7 7 chrX 27448728 27448871 -149525269 - AluY SINE Alu -168 143 1 2046 201 165 14 chrX 27449470 27450118 -149524022 + MER20B DNA MER1_type 27 772 -11 253 231 0 0 chrX 27450133 27450185 -149523955 - MIR SINE MIR -118 144 93 23 33 0 0 chrX 27450865 27450895 -149523245 + GC_rich Low_complexity Low_complexity 1 30 0 266 186 29 29 chrX 27451042 27451144 -149522996 + C-rich Low_complexity Low_complexity 1 102 0 201 162 0 0 chrX 27451372 27451409 -149522731 + A-rich Low_complexity Low_complexity 1 37 0 1363 126 138 27 chrX 27453847 27454108 -149520032 + AluSg1 SINE Alu 14 303 -6 965 88 7 0 chrX 27454988 27455124 -149519016 - AluSp/q SINE Alu -10 303 167 35 0 0 0 chrX 27456345 27456380 -149517760 + AT_rich Low_complexity Low_complexity 1 35 0 2149 93 17 3 chrX 27457254 27457555 -149516585 - AluSx SINE Alu -7 305 1 2073 91 7 10 chrX 27458333 27458630 -149515510 - AluSp SINE Alu -17 296 1 579 298 49 10 chrX 27460724 27460929 -149513211 - MER58A DNA MER1_type -10 214 2 1066 103 22 16 chrX 27461773 27461958 -149512182 - AluSp SINE Alu -2 311 126 1983 140 0 13 chrX 27462886 27463201 -149510939 - 7SLRNA srpRNA srpRNA -9 311 1 586 158 241 23 chrX 27463245 27463378 -149510762 + FAM SINE Alu 1 162 -13 246 313 0 0 chrX 27464679 27464762 -149509378 + (CAG)n Simple_repeat Simple_repeat 2 84 0 533 162 9 48 chrX 27467987 27468092 -149506048 + FLAM_A SINE Alu 21 121 -21 630 156 156 19 chrX 27469310 27469470 -149504670 + L1ME4a LINE L1 5624 5805 -373 218 255 36 120 chrX 27469981 27470173 -149503967 - MER5B DNA MER1_type -2 176 1 2043 83 7 50 chrX 27470495 27470795 -149503345 + AluY SINE Alu 1 287 -24 1655 134 73 11 chrX 27470829 27471104 -149503036 + AluSg SINE Alu 1 292 -18 255 61 0 0 chrX 27471117 27471150 -149502990 + (CA)n Simple_repeat Simple_repeat 2 34 0 317 298 210 11 chrX 27471173 27471354 -149502786 + L1ME4a LINE L1 5840 6056 -65 4245 173 80 62 chrX 27471400 27471666 -149502474 - L1MD2 LINE L1 -34 6325 6065 1549 144 86 11 chrX 27471666 27471944 -149502196 - AluJb SINE Alu -13 299 1 4245 173 80 62 chrX 27471944 27472143 -149501997 - L1MD2 LINE L1 -294 6065 5871 2030 85 44 0 chrX 27472143 27472441 -149501699 - AluSx SINE Alu 0 310 1 4245 173 80 62 chrX 27472441 27472800 -149501340 - L1MD2 LINE L1 -488 5871 5520 1621 152 0 53 chrX 27472800 27473103 -149501037 - AluJb SINE Alu -24 288 2 4245 173 80 62 chrX 27473103 27473455 -149500685 - L1MD2 LINE L1 -839 5520 5133 2127 107 0 23 chrX 27473457 27473766 -149500374 - AluSx SINE Alu -10 302 1 1986 103 48 0 chrX 27473770 27473946 -149500194 - AluSc SINE Alu -3 306 109 180 0 0 0 chrX 27473946 27473966 -149500174 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 1986 103 48 0 chrX 27473966 27474081 -149500059 - AluSc SINE Alu -200 109 1 1342 236 5 43 chrX 27474082 27474245 -149499895 - L1MD2 LINE L1 -1229 4917 4749 2208 108 3 0 chrX 27474245 27474551 -149499589 - AluSx SINE Alu -5 307 1 1342 236 5 43 chrX 27474551 27474785 -149499355 - L1MD2 LINE L1 -1397 4749 4535 1345 135 0 28 chrX 27474838 27475053 -149499087 - AluJo SINE Alu -103 209 1 2309 77 10 3 chrX 27475383 27475694 -149498446 - AluSp SINE Alu 0 313 1 2115 106 13 0 chrX 27476072 27476373 -149497767 - AluSq SINE Alu -8 305 1 2013 108 35 0 chrX 27476642 27476928 -149497212 + AluSx SINE Alu 1 296 -16 2029 40 44 74 chrX 27477009 27477305 -149496835 + AluY SINE Alu 1 287 -24 201 39 0 0 chrX 27477315 27477341 -149496799 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1737 65 0 0 chrX 27477413 27477627 -149496513 + AluSx SINE Alu 1 214 -98 1101 91 32 0 chrX 27477731 27477885 -149496255 + AluSg/x SINE Alu 140 298 -14 928 133 26 0 chrX 27478026 27478177 -149495963 + MER68 LTR ERV1 1 155 -407 1734 138 27 10 chrX 27478177 27478474 -149495666 - AluJo SINE Alu -10 302 1 2198 93 3 3 chrX 27478688 27478999 -149495141 + AluY SINE Alu 1 311 0 374 131 34 91 chrX 27479141 27479317 -149494823 + T-rich Low_complexity Low_complexity 4 169 0 1430 121 8 24 chrX 27479396 27479645 -149494495 + AluY SINE Alu 59 303 -8 986 167 0 0 chrX 27479648 27479804 -149494336 + AluJo/FRAM SINE Alu 137 292 -10 38 0 0 0 chrX 27479804 27479842 -149494298 + AT_rich Low_complexity Low_complexity 1 38 0 2086 86 31 3 chrX 27480306 27480596 -149493544 - AluSp SINE Alu -15 298 1 321 233 150 38 chrX 27480657 27480790 -149493350 - MIR SINE MIR -48 214 67 211 71 48 0 chrX 27480790 27480832 -149493308 + (TA)n Simple_repeat Simple_repeat 2 45 0 2090 99 25 0 chrX 27481192 27481476 -149492664 - AluSx SINE Alu -21 291 1 1997 106 0 70 chrX 27481835 27482166 -149491974 + AluSq SINE Alu 1 308 -5 934 95 0 0 chrX 27482492 27482618 -149491522 - AluSg1 SINE Alu -183 126 1 1703 164 3 13 chrX 27482652 27482950 -149491190 - AluJb SINE Alu -16 296 2 1999 130 13 0 chrX 27482958 27483257 -149490883 - AluSq SINE Alu -10 303 1 1717 275 131 15 chrX 27483387 27483922 -149490218 + MER115 DNA AcHobo 97 693 0 520 209 39 65 chrX 27484123 27484276 -149489864 - MIR3 SINE MIR -45 163 15 809 190 7 0 chrX 27485483 27485625 -149488515 - AluJb SINE Alu -33 279 137 253 275 214 42 chrX 27485643 27485813 -149488327 + L2 LINE L2 1712 1851 -1463 2174 106 0 3 chrX 27485813 27486115 -149488025 + AluSc SINE Alu 1 301 -8 253 275 214 42 chrX 27486115 27486275 -149487865 + L2 LINE L2 1851 2099 -1215 342 126 5 0 chrX 27486309 27486373 -149487767 - Alu SINE Alu -256 44 1 439 276 110 76 chrX 27486474 27486666 -149487474 + L2 LINE L2 2379 2584 -730 2335 92 0 0 chrX 27486666 27486971 -149487169 - AluSq SINE Alu -8 305 1 439 276 110 76 chrX 27486971 27487042 -149487098 + L2 LINE L2 2584 2651 -663 307 265 205 51 chrX 27487020 27487235 -149486905 + L2 LINE L2 2811 3058 -214 * 2053 126 3 0 chrX 27487723 27488017 -149486123 + AluSx SINE Alu 1 295 -17 2367 77 3 0 chrX 27488081 27488391 -149485749 + AluSp SINE Alu 1 311 -2 282 200 111 33 chrX 27488613 27488703 -149485437 + MLT1L LTR MaLR 30 126 -489 601 90 0 0 chrX 27489119 27489197 -149484943 + AluJ/FLAM SINE Alu 2 79 -233 460 234 95 0 chrX 27489201 27489338 -149484802 + L1MC5 LINE L1 7741 7890 -71 2150 100 0 19 chrX 27489398 27489708 -149484432 - AluSx SINE Alu -8 304 1 1918 147 0 0 chrX 27489708 27490015 -149484125 - AluJo SINE Alu -5 307 1 411 312 37 62 chrX 27490209 27490533 -149483607 + L2 LINE L2 2434 2749 -565 2194 95 3 0 chrX 27490578 27490873 -149483267 - AluSx SINE Alu -16 296 1 1687 141 0 49 chrX 27490881 27491186 -149482954 - AluJo SINE Alu -22 290 1 232 224 26 129 chrX 27491223 27491289 -149482851 - L1ME3A LINE L1 -97 6073 6022 2130 116 0 0 chrX 27491289 27491590 -149482550 + AluSx SINE Alu 1 301 -11 232 224 26 129 chrX 27491590 27491639 -149482501 - L1ME3A LINE L1 -148 6022 5970 392 193 62 90 chrX 27491703 27491744 -149482396 - L1M3 LINE L1 -343 5819 5778 2151 88 0 0 chrX 27491744 27492055 -149482085 - AluSx SINE Alu 0 311 1 392 193 62 90 chrX 27492055 27492157 -149481983 - L1M3 LINE L1 -384 5778 5684 312 174 92 31 chrX 27492150 27492248 -149481892 - L1MC5 LINE L1 -45 7916 7813 * 269 376 6 30 chrX 27492256 27492421 -149481719 - MER5B DNA MER1_type -17 161 1 1973 93 0 63 chrX 27492508 27492852 -149481288 - AluSx SINE Alu 0 325 1 709 169 22 37 chrX 27492854 27492990 -149481150 - FLAM_C SINE Alu -8 135 2 243 245 112 20 chrX 27493007 27493105 -149481035 + L2 LINE L2 2847 2953 -319 2293 103 0 0 chrX 27493107 27493418 -149480722 - AluSx SINE Alu -1 311 1 3123 204 75 33 chrX 27493550 27494096 -149480044 - L1ME1 LINE L1 0 6560 6038 2325 106 0 0 chrX 27494096 27494398 -149479742 - AluSx SINE Alu -10 302 1 3123 204 75 33 chrX 27494398 27494790 -149479350 - L1ME1 LINE L1 -522 6038 5578 1856 150 10 7 chrX 27494790 27495090 -149479050 - AluJo SINE Alu -11 301 1 3123 204 75 33 chrX 27495090 27495194 -149478946 - L1ME1 LINE L1 -982 5578 5480 2045 149 7 0 chrX 27495194 27495495 -149478645 - AluJb SINE Alu -9 303 1 1075 221 59 18 chrX 27495499 27495838 -149478302 - L1ME1 LINE L1 -2640 3900 3548 2412 99 3 6 chrX 27495843 27496157 -149477983 - AluSq SINE Alu 0 313 1 1314 116 0 0 chrX 27496166 27496388 -149477752 + AluSg/x SINE Alu 118 310 0 2408 235 34 24 chrX 27496388 27496641 -149477499 + L1M4 LINE L1 2354 2603 -3543 2330 92 0 16 chrX 27496641 27496947 -149477193 + AluSg SINE Alu 1 301 -9 2408 235 34 24 chrX 27496947 27497365 -149476775 + L1M4 LINE L1 2603 3035 -3111 2362 88 0 19 chrX 27497365 27497682 -149476458 + AluSq SINE Alu 2 312 -1 1010 217 26 15 chrX 27497682 27497949 -149476191 - L1ME1 LINE L1 -4425 2115 1846 2153 115 0 14 chrX 27497971 27498286 -149475854 + AluSx SINE Alu 1 311 0 247 269 0 64 chrX 27498287 27498365 -149475775 - L2 LINE L2 -18 3295 3223 1984 162 0 10 chrX 27498506 27498834 -149475306 - AluJo SINE Alu 0 312 1 1756 174 31 62 chrX 27498865 27499249 -149474891 + MLT1A2 LTR MaLR 3 374 0 2416 88 0 0 chrX 27499837 27500134 -149474006 - AluSx SINE Alu -15 297 1 973 120 0 0 chrX 27500403 27500536 -149473604 - AluJb SINE Alu -179 133 1 2444 115 0 0 chrX 27500544 27500856 -149473284 - AluSx SINE Alu 0 312 1 2427 85 0 0 chrX 27501456 27501749 -149472391 - AluSg SINE Alu -17 293 1 2471 88 0 0 chrX 27501932 27502228 -149471912 + AluSg SINE Alu 1 296 -14 184 293 65 49 chrX 27502721 27502844 -149471296 + L3b LINE CR1 1318 1442 -141 2216 131 0 6 chrX 27502845 27503159 -149470981 - AluSx SINE Alu 0 312 1 1314 220 75 13 chrX 27503268 27503641 -149470499 + L1ME3A LINE L1 5587 5982 -188 192 97 0 0 chrX 27503654 27503685 -149470455 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2145 117 0 4 chrX 27503688 27503969 -149470171 - AluSg SINE Alu -30 280 1 487 256 31 25 chrX 27504078 27504238 -149469902 - L1ME3 LINE L1 -4 6158 6000 2072 109 11 18 chrX 27504526 27504704 -149469436 - AluSx SINE Alu 0 314 137 2465 70 3 0 chrX 27504704 27505002 -149469138 - AluY SINE Alu -12 299 1 2072 109 11 18 chrX 27505002 27505139 -149469001 - AluSx SINE Alu -177 137 1 2425 91 3 0 chrX 27505609 27505918 -149468222 - AluSp SINE Alu -3 310 1 2261 86 10 3 chrX 27505919 27506209 -149467931 - AluSg SINE Alu -18 292 1 2604 37 3 0 chrX 27506675 27506975 -149467165 + AluY SINE Alu 1 301 -10 2270 99 10 0 chrX 27506978 27507280 -149466860 + AluSq SINE Alu 1 305 -8 222 62 0 0 chrX 27507979 27508011 -149466129 + (A)n Simple_repeat Simple_repeat 1 32 0 2340 72 0 17 chrX 27508425 27508716 -149465424 - AluSx SINE Alu -19 293 8 243 0 0 0 chrX 27508718 27508745 -149465395 + (T)n Simple_repeat Simple_repeat 1 27 0 384 196 78 10 chrX 27509108 27509210 -149464930 + L1MB8 LINE L1 5468 5576 -602 1159 22 0 29 chrX 27509211 27509348 -149464792 + SVA Other Other 1254 1386 0 506 137 12 2 chrX 27509348 27509444 -149464696 + L1MB8 LINE L1 5574 5669 -514 1852 122 10 59 chrX 27509449 27509753 -149464387 + AluSx SINE Alu 12 300 -12 1322 159 92 131 chrX 27509756 27509906 -149464234 - MER4C LTR ERV1 -17 448 294 1883 144 0 11 chrX 27509906 27510041 -149464099 + AluJb SINE Alu 1 136 -196 2292 101 7 0 chrX 27510041 27510339 -149463801 + AluSg SINE Alu 1 300 -10 1883 144 0 11 chrX 27510339 27510538 -149463602 + AluJb SINE Alu 136 332 0 2073 136 0 13 chrX 27510546 27510873 -149463267 + AluSx SINE Alu 1 323 0 1322 159 92 131 chrX 27510873 27511175 -149462965 - MER4C LTR ERV1 -178 287 2 617 147 54 0 chrX 27511176 27511305 -149462835 + L1MB8 LINE L1 5638 5773 -405 878 127 6 53 chrX 27511313 27511489 -149462651 + LTR23 LTR ERV1 59 242 -195 1950 109 0 91 chrX 27511489 27511818 -149462322 + AluSx SINE Alu 1 299 -13 878 127 6 53 chrX 27511818 27511960 -149462180 + LTR23 LTR ERV1 242 437 0 818 179 21 26 chrX 27511960 27512150 -149461990 + L1MB8 LINE L1 5749 5937 -241 1244 120 0 11 chrX 27512150 27512333 -149461807 + AluSg/x SINE Alu 132 312 0 185 399 44 6 chrX 27512404 27512562 -149461578 - L2 LINE L2 -608 2706 2543 2466 183 83 26 chrX 27512604 27512877 -149461263 - LTR39 LTR ERV1 -2 781 525 2493 80 0 3 chrX 27512877 27513190 -149460950 - AluSx SINE Alu 0 312 1 2466 183 83 26 chrX 27513190 27513456 -149460684 - LTR39 LTR ERV1 -258 525 211 929 184 0 0 chrX 27513483 27513646 -149460494 - AluJb SINE Alu -2 310 148 289 333 20 0 chrX 27513648 27513750 -149460390 + MIR SINE MIR 105 208 -54 4201 62 5 58 chrX 27514667 27514812 -149459328 + MER41A LTR ERV1 1 152 -402 2284 110 0 3 chrX 27514812 27515122 -149459018 + AluSc SINE Alu 1 309 0 4201 62 5 58 chrX 27515122 27515486 -149458654 + MER41A LTR ERV1 152 478 -76 2462 77 7 0 chrX 27515486 27515783 -149458357 - AluSg SINE Alu -10 300 2 4201 62 5 58 chrX 27515783 27515857 -149458283 + MER41A LTR ERV1 478 554 0 333 68 0 0 chrX 27516916 27516960 -149457180 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2165 86 45 3 chrX 27517035 27517326 -149456814 + AluSx SINE Alu 1 303 -9 1336 99 0 76 chrX 27517350 27517561 -149456579 + AluJo SINE Alu 116 310 -2 1472 116 0 5 chrX 27517779 27517977 -149456163 - AluSx SINE Alu -115 197 1 1039 162 0 20 chrX 27517978 27518176 -149455964 + L1MB3 LINE L1 5819 6012 -171 1172 140 0 11 chrX 27518179 27518225 -149455915 - AluSp SINE Alu -134 179 134 2438 78 0 3 chrX 27518225 27518521 -149455619 - AluSx SINE Alu -17 295 1 1172 140 0 11 chrX 27518521 27518653 -149455487 - AluSp SINE Alu -179 134 3 900 211 30 17 chrX 27518653 27518885 -149455255 + LTR16C LTR ERVL 257 491 0 1895 160 7 10 chrX 27519255 27519543 -149454597 - AluSx SINE Alu -25 287 1 1399 147 9 5 chrX 27519553 27519771 -149454369 - AluJb SINE Alu -9 303 85 2298 104 0 0 chrX 27519786 27520085 -149454055 - AluSx SINE Alu -13 299 1 207 0 0 0 chrX 27520137 27520160 -149453980 + (CAA)n Simple_repeat Simple_repeat 2 24 0 234 172 0 65 chrX 27520400 27520479 -149453661 + CT-rich Low_complexity Low_complexity 3 77 -12 1930 172 0 0 chrX 27520479 27520770 -149453370 - AluJb SINE Alu -21 291 1 234 172 0 65 chrX 27520770 27520783 -149453357 + CT-rich Low_complexity Low_complexity 77 89 0 2254 112 10 0 chrX 27520801 27521106 -149453034 + AluSx SINE Alu 1 308 -4 2264 94 0 3 chrX 27521494 27521802 -149452338 - AluSx SINE Alu 0 308 2 350 224 37 161 chrX 27521812 27521942 -149452198 - L1MC/D LINE L1 -2211 5597 5453 2605 201 51 34 chrX 27521942 27522136 -149452004 - MLT1E3 LTR MaLR -3 621 432 1876 153 32 23 chrX 27522136 27522168 -149451972 - AluSx SINE Alu -1 311 281 297 0 0 0 chrX 27522168 27522201 -149451939 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1876 153 32 23 chrX 27522201 27522476 -149451664 - AluSx SINE Alu -31 281 1 2605 201 51 34 chrX 27522476 27522892 -149451248 - MLT1E3 LTR MaLR -192 432 1 350 224 37 161 chrX 27522892 27522946 -149451194 - L1MC/D LINE L1 -2355 5453 5394 2291 112 0 3 chrX 27522946 27523251 -149450889 - AluSq SINE Alu -9 304 1 350 224 37 161 chrX 27523251 27523371 -149450769 - L1MC/D LINE L1 -2414 5394 5337 1717 146 73 0 chrX 27523371 27523646 -149450494 - AluJo SINE Alu -14 298 4 350 224 37 161 chrX 27523646 27523687 -149450453 - L1MC/D LINE L1 -2471 5337 5293 2244 100 0 0 chrX 27523720 27524001 -149450139 + AluSq SINE Alu 1 281 -32 207 0 0 0 chrX 27524002 27524025 -149450115 + (TC)n Simple_repeat Simple_repeat 1 23 0 1193 115 23 17 chrX 27524037 27524211 -149449929 + AluSg/x SINE Alu 127 301 -11 2234 115 17 0 chrX 27524378 27524674 -149449466 - AluSx SINE Alu -11 301 1 2177 95 28 0 chrX 27524702 27524985 -149449155 + AluSx SINE Alu 1 291 -21 211 71 48 0 chrX 27525345 27525387 -149448753 + (TA)n Simple_repeat Simple_repeat 2 45 0 316 233 150 38 chrX 27525387 27525520 -149448620 + MIR SINE MIR 67 214 -48 2223 89 31 3 chrX 27525581 27525873 -149448267 + AluSp SINE Alu 1 300 -13 38 0 0 0 chrX 27526337 27526375 -149447765 + AT_rich Low_complexity Low_complexity 1 38 0 2142 99 0 40 chrX 27526375 27526534 -149447606 - AluY SINE Alu -20 291 148 2588 51 0 19 chrX 27526534 27526845 -149447295 - AluY SINE Alu -6 305 1 2142 99 0 40 chrX 27526845 27526988 -149447152 - AluY SINE Alu -163 148 1 6887 78 15 5 chrX 27526990 27528137 -149446003 - L1PA10 LINE L1 -10 6158 5003 1973 117 36 4 chrX 27528209 27528520 -149445620 - AluSx SINE Alu 0 320 1 1681 151 0 82 chrX 27528755 27528913 -149445227 - AluJo SINE Alu -21 291 170 2201 124 0 3 chrX 27528913 27529211 -149444929 - AluSx SINE Alu -15 297 1 1681 151 0 82 chrX 27529211 27529369 -149444771 - AluJo SINE Alu -142 170 1 586 293 17 6 chrX 27530764 27530945 -149443195 - MIR SINE MIR -1 261 79 2402 79 16 7 chrX 27531177 27531482 -149442658 - AluSx SINE Alu -4 308 1 1893 126 66 140 chrX 27531768 27531810 -149442330 - MLT1D LTR MaLR 0 505 461 2406 82 3 3 chrX 27531810 27532113 -149442027 + AluSx SINE Alu 1 303 -9 1893 126 66 140 chrX 27532113 27532143 -149441997 - MLT1D LTR MaLR -44 461 430 852 181 0 0 chrX 27532143 27532276 -149441864 + FLAM_C SINE Alu 1 133 0 1893 126 66 140 chrX 27532276 27532702 -149441438 - MLT1D LTR MaLR -75 430 43 2510 260 54 19 chrX 27533446 27534039 -149440101 + Zaphod DNA AcHobo 1 629 -3402 327 25 0 0 chrX 27534039 27534079 -149440061 + (CA)n Simple_repeat Simple_repeat 2 41 0 2510 260 54 19 chrX 27534079 27534267 -149439873 + Zaphod DNA AcHobo 629 809 -3222 240 35 0 0 chrX 27534366 27534395 -149439745 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 1827 125 3 35 chrX 27534395 27534682 -149439458 - AluSq SINE Alu -35 278 1 422 213 0 0 chrX 27534903 27534983 -149439157 - L2 LINE L2 0 3313 3234 2188 86 0 40 chrX 27535279 27535445 -149438695 - LTR8 LTR ERV1 0 691 543 2447 65 3 0 chrX 27535445 27535737 -149438403 - AluSp SINE Alu -20 293 1 2188 86 0 40 chrX 27535737 27535896 -149438244 - LTR8 LTR ERV1 -148 543 379 1131 68 0 0 chrX 27535893 27536041 -149438099 - LTR8 LTR ERV1 -543 148 1 * 2170 114 37 0 chrX 27536084 27536204 -149437936 + AluSx SINE Alu 1 115 -197 188 0 74 0 chrX 27536204 27536231 -149437909 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2170 114 37 0 chrX 27536231 27536409 -149437731 + AluSx SINE Alu 115 310 -2 2167 114 0 0 chrX 27536444 27536725 -149437415 + AluSx SINE Alu 1 304 0 208 0 0 0 chrX 27536725 27536748 -149437392 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1245 118 45 142 chrX 27537459 27537791 -149436349 - AluSx SINE Alu 0 302 3 2233 77 0 0 chrX 27537795 27538080 -149436060 - AluSp SINE Alu -11 302 18 550 141 190 74 chrX 27538103 27538271 -149435869 + Zaphod DNA AcHobo 551 758 -3273 1783 124 29 0 chrX 27538271 27538581 -149435559 + AluSx SINE Alu 2 319 0 550 141 190 74 chrX 27538581 27538653 -149435487 + Zaphod DNA AcHobo 758 820 -3211 930 151 60 60 chrX 27538653 27538806 -149435334 - L1MB3 LINE L1 -5 6178 6023 1677 171 56 9 chrX 27538806 27539128 -149435012 + MER1B DNA MER1_type 1 337 0 930 151 60 60 chrX 27539128 27539192 -149434948 - L1MB3 LINE L1 -159 6024 5961 2163 102 0 0 chrX 27539211 27539504 -149434636 - AluSg SINE Alu -13 297 5 2429 54 0 0 chrX 27539519 27539816 -149434324 - AluY SINE Alu -14 297 1 1670 165 7 3 chrX 27539840 27540131 -149434009 - AluJb SINE Alu -14 298 7 2202 116 0 0 chrX 27540212 27540522 -149433618 - AluSx SINE Alu -2 310 1 306 126 0 23 chrX 27540528 27540615 -149433525 + Zaphod DNA AcHobo 904 988 -3043 1161 174 143 78 chrX 27540616 27540935 -149433205 + Zaphod DNA AcHobo 3596 3893 -138 2126 108 0 13 chrX 27540935 27541241 -149432899 + AluSx SINE Alu 1 302 -10 2216 75 3 3 chrX 27541248 27541543 -149432597 + AluSq SINE Alu 5 299 -14 2142 46 7 11 chrX 27541544 27541849 -149432291 + AluY SINE Alu 1 304 0 1161 174 143 78 chrX 27541849 27541902 -149432238 + Zaphod DNA AcHobo 3897 4004 -27 746 144 81 23 chrX 27541912 27542086 -149432054 + MER53 DNA DNA 3 186 -3 339 302 78 62 chrX 27542193 27542394 -149431746 - L1ME3A LINE L1 -1 6169 5958 1908 101 61 4 chrX 27542394 27542671 -149431469 - AluSp SINE Alu -19 294 2 339 302 78 62 chrX 27542671 27542856 -149431284 - L1ME3A LINE L1 -212 5958 5777 900 167 0 0 chrX 27542859 27543003 -149431137 - FRAM SINE Alu -20 156 13 352 275 0 3 chrX 27543017 27543116 -149431024 - L1MB3 LINE L1 -384 5786 5689 2078 101 27 3 chrX 27543118 27543416 -149430724 - AluSx SINE Alu -7 305 1 323 284 11 33 chrX 27544419 27544446 -149429694 + L1P5 LINE L1 5254 5280 -876 2181 108 0 3 chrX 27544446 27544753 -149429387 - AluSx SINE Alu -5 307 2 323 284 11 33 chrX 27544753 27544908 -149429232 + L1P5 LINE L1 5280 5432 -724 2087 123 0 3 chrX 27544917 27545219 -149428921 + AluY SINE Alu 1 301 -10 338 169 0 0 chrX 27545224 27545283 -149428857 + L1ME3A LINE L1 5742 5800 -364 1158 238 83 17 chrX 27545354 27545716 -149428424 + L1ME3A LINE L1 5785 6170 0 2329 164 20 69 chrX 27546303 27546663 -149427477 + Charlie1b DNA MER1_type 1 377 -2384 1717 143 0 21 chrX 27546663 27546976 -149427164 - AluJo SINE Alu 0 308 2 2329 164 20 69 chrX 27546976 27547016 -149427124 + Charlie1b DNA MER1_type 377 417 -2344 2072 104 6 28 chrX 27547016 27547333 -149426807 - AluSx SINE Alu -2 310 1 2329 164 20 69 chrX 27547333 27547480 -149426660 + Charlie1b DNA MER1_type 417 523 0 801 222 27 69 chrX 27547500 27547652 -149426488 - L1MD3 LINE L1 -16 7979 7841 2242 94 0 0 chrX 27547652 27547949 -149426191 - AluSx SINE Alu -15 297 1 801 222 27 69 chrX 27547949 27548057 -149426083 - L1MD3 LINE L1 -154 7841 7730 1104 58 0 0 chrX 27548199 27548338 -149425802 + Tigger2 DNA MER2_type 2391 2529 -189 2342 70 0 0 chrX 27548348 27548647 -149425493 + AluY SINE Alu 1 299 -12 792 165 8 0 chrX 27548663 27548790 -149425350 + FLAM_C SINE Alu 6 133 -10 883 211 113 153 chrX 27548797 27549024 -149425116 + L1MC5 LINE L1 6906 7141 -820 2033 97 0 31 chrX 27549024 27549336 -149424804 - AluSg SINE Alu 0 306 4 1708 163 3 7 chrX 27549338 27549627 -149424513 - AluJo SINE Alu -23 289 2 2100 102 17 0 chrX 27549633 27549928 -149424212 - AluSx SINE Alu -12 300 1 883 211 113 153 chrX 27549928 27550045 -149424095 + L1MC5 LINE L1 7147 7267 -694 652 176 67 0 chrX 27550045 27550164 -149423976 - FLAM_A SINE Alu -6 127 1 883 211 113 153 chrX 27550164 27550299 -149423841 + L1MC5 LINE L1 7267 7406 -555 2345 80 3 0 chrX 27550299 27550601 -149423539 + AluSp SINE Alu 1 303 -10 883 211 113 153 chrX 27550601 27550677 -149423463 + L1MC5 LINE L1 7406 7483 -478 2233 92 6 13 chrX 27550677 27550992 -149423148 + AluSq SINE Alu 1 313 0 883 211 113 153 chrX 27550992 27551273 -149422867 + L1MC5 LINE L1 7483 7708 -253 10577 22 0 0 chrX 27551273 27553256 -149420884 - L1PA3 LINE L1 -3 6152 4170 883 211 113 153 chrX 27553256 27553458 -149420682 + L1MC5 LINE L1 7708 7917 -44 2154 80 4 0 chrX 27553482 27553756 -149420384 + AluSp SINE Alu 1 275 -38 1676 122 0 99 chrX 27555348 27555578 -149418562 - AluJo SINE Alu -1 311 125 2057 131 0 0 chrX 27555578 27555883 -149418257 + AluSx SINE Alu 1 305 -7 1676 122 0 99 chrX 27555883 27555997 -149418143 - AluJo SINE Alu -187 125 1 1587 104 49 139 chrX 27556205 27556410 -149417730 - Charlie1b DNA MER1_type -2239 522 300 1975 133 0 31 chrX 27556410 27556727 -149417413 - AluSx SINE Alu -5 307 1 1587 104 49 139 chrX 27556727 27556997 -149417143 - Charlie1b DNA MER1_type -2461 300 78 854 131 0 0 chrX 27556999 27557121 -149417019 + FLAM_C SINE Alu 1 122 -11 227 114 23 0 chrX 27557121 27557165 -149416975 + (TA)n Simple_repeat Simple_repeat 2 46 0 329 258 0 0 chrX 27557166 27557255 -149416885 + L1MC4 LINE L1 6615 6703 -1339 427 256 12 0 chrX 27557260 27557346 -149416794 - Charlie1b DNA MER1_type -435 88 2 737 249 136 89 chrX 27557381 27557875 -149416265 - MLT1L LTR MaLR -91 524 8 2248 91 7 0 chrX 27558066 27558363 -149415777 - AluSp SINE Alu -14 299 1 1845 124 18 3 chrX 27558724 27559007 -149415133 - AluSq SINE Alu -26 287 1 1915 132 0 13 chrX 27559220 27559545 -149414595 - AluJb SINE Alu 0 312 1 2123 92 0 3 chrX 27559661 27559978 -149414162 + AluSp SINE Alu 1 316 0 1855 88 19 8 chrX 27560049 27560310 -149413830 - L1PA8A LINE L1 -4 6127 5864 1069 177 60 4 chrX 27560329 27560571 -149413569 - LTR54B LTR ERV1 -1 497 242 253 154 0 0 chrX 27560571 27560610 -149413530 - MSTD LTR MaLR 0 457 419 984 180 267 16 chrX 27560610 27560693 -149413447 + MSTC LTR MaLR 1 62 -366 1957 138 0 3 chrX 27560693 27560989 -149413151 + AluSx SINE Alu 1 295 -17 984 180 267 16 chrX 27560989 27561216 -149412924 + MSTC LTR MaLR 62 389 -39 536 133 12 0 chrX 27561217 27561300 -149412840 + AluJ/FLAM SINE Alu 2 85 -227 * 757 115 0 0 chrX 27561292 27561441 -149412699 + AluSp/q SINE Alu 181 329 0 345 137 0 0 chrX 27561460 27561511 -149412629 + MSTC LTR MaLR 407 457 0 812 206 147 71 chrX 27561515 27561753 -149412387 - MSTD LTR MaLR -38 358 103 705 137 62 62 chrX 27561748 27561909 -149412231 - LTR54 LTR ERV1 -349 161 1 * 2101 126 7 0 chrX 27562584 27562894 -149411246 + AluSx SINE Alu 1 312 0 2125 136 0 0 chrX 27562924 27563233 -149410907 + AluSx SINE Alu 1 309 -3 1966 105 0 71 chrX 27563234 27563557 -149410583 - AluSx SINE Alu -12 300 1 696 346 90 17 chrX 27563650 27564118 -149410022 + L1M4 LINE L1 2121 2622 -3524 24 0 0 0 chrX 27564441 27564465 -149409675 + AT_rich Low_complexity Low_complexity 1 24 0 2101 96 20 10 chrX 27564472 27564765 -149409375 + AluSx SINE Alu 5 300 -12 685 203 0 14 chrX 27564765 27564897 -149409243 - L1MB3 LINE L1 -63 6120 5991 253 263 53 0 chrX 27564898 27564974 -149409166 + MLT1K LTR MaLR 509 588 0 343 54 87 0 chrX 27564987 27565079 -149409061 + (TA)n Simple_repeat Simple_repeat 2 101 0 324 281 100 96 chrX 27565083 27565548 -149408592 - L1MEd LINE L1 -4875 1244 802 1977 144 3 0 chrX 27565599 27565898 -149408242 + AluSq SINE Alu 4 303 -10 1798 166 0 13 chrX 27565906 27566220 -149407920 + AluJb SINE Alu 2 311 -1 914 103 0 0 chrX 27566254 27566380 -149407760 + AluSg1 SINE Alu 1 126 -183 391 155 0 28 chrX 27566403 27566474 -149407666 - Tigger2 DNA MER2_type -2649 69 1 535 201 39 71 chrX 27567632 27567786 -149406354 + MIR3 SINE MIR 15 163 -45 1705 277 131 15 chrX 27567987 27568522 -149405618 - MER115 DNA AcHobo 0 693 97 2162 85 0 0 chrX 27568652 27568976 -149405164 + AluSx SINE Alu 1 324 0 927 125 0 0 chrX 27569288 27569424 -149404716 + AluSq SINE Alu 87 222 -91 1970 141 0 10 chrX 27569560 27569864 -149404276 + AluSx SINE Alu 1 301 -11 383 221 111 87 chrX 27570859 27570928 -149403212 - MER5A DNA MER1_type 0 189 123 2237 65 37 7 chrX 27570928 27571222 -149402918 + AluSc SINE Alu 1 303 -6 383 221 111 87 chrX 27571222 27571324 -149402816 - MER5A DNA MER1_type -66 123 14 204 143 0 24 chrX 27571665 27571707 -149402433 + (CTGGGG)n Simple_repeat Simple_repeat 1 41 0 2418 51 0 0 chrX 27572816 27573112 -149401028 - AluY SINE Alu -6 305 10 2120 112 6 6 chrX 27573127 27573439 -149400701 - AluSx SINE Alu 0 312 1 1974 117 20 0 chrX 27574847 27575146 -149398994 - AluSx SINE Alu -3 309 5 233 155 155 0 chrX 27575170 27575228 -149398912 + L1ME1 LINE L1 5406 5472 -702 1149 121 0 0 chrX 27575228 27575393 -149398747 - AluSg/x SINE Alu -15 295 131 1224 149 103 70 chrX 27575410 27575712 -149398428 - AluSx SINE Alu 0 312 1 2454 183 98 75 chrX 27575713 27576102 -149398038 + L1ME1 LINE L1 5458 5836 -498 2012 120 0 0 chrX 27576102 27576393 -149397747 - AluSx SINE Alu -21 291 1 2454 183 98 75 chrX 27576393 27576558 -149397582 + L1ME1 LINE L1 5836 5996 -338 1689 132 8 4 chrX 27576558 27576823 -149397317 - AluJb SINE Alu -17 295 30 2454 183 98 75 chrX 27576823 27576969 -149397171 + L1ME1 LINE L1 5996 6334 0 416 233 59 15 chrX 27577055 27577206 -149396934 - L1ME2 LINE L1 -297 5867 5716 2163 125 0 0 chrX 27578023 27578335 -149395805 - AluSx SINE Alu 0 312 1 1128 203 18 0 chrX 27578335 27578552 -149395588 - L1MB2 LINE L1 -345 5826 5606 850 191 13 6 chrX 27578623 27578780 -149395360 - MER5B DNA MER1_type -3 175 18 2110 100 3 3 chrX 27578900 27579190 -149394950 - AluSg SINE Alu -20 290 1 2004 165 0 0 chrX 27579195 27579486 -149394654 - AluJb SINE Alu -21 291 1 202 222 0 0 chrX 27579617 27579662 -149394478 - MIR SINE MIR -107 155 111 2456 96 0 3 chrX 27579673 27579986 -149394154 - AluSx SINE Alu 0 312 1 1781 118 12 4 chrX 27580635 27580881 -149393259 + AluSx SINE Alu 1 248 -64 752 286 173 30 chrX 27580966 27581435 -149392705 - LTR67 LTR ERVL -2 555 20 2220 130 16 50 chrX 27581439 27581605 -149392535 + MLT1A1 LTR MaLR 1 171 -194 2379 83 7 3 chrX 27581605 27581906 -149392234 + AluSq SINE Alu 1 302 -11 2220 130 16 50 chrX 27581906 27582117 -149392023 + MLT1A1 LTR MaLR 171 365 0 205 359 0 58 chrX 27582421 27582470 -149391670 - MIR3 SINE MIR -10 198 157 1904 185 109 0 chrX 27582470 27582827 -149391313 - MSTD LTR MaLR 0 396 1 205 359 0 58 chrX 27582827 27582880 -149391260 - MIR3 SINE MIR -51 157 102 303 323 97 26 chrX 27582926 27583049 -149391091 + MIR SINE MIR 94 232 -30 2243 101 0 24 chrX 27583049 27583346 -149390794 - AluSx SINE Alu -22 290 1 303 323 97 26 chrX 27583346 27583377 -149390763 + MIR SINE MIR 232 259 -3 2269 87 0 11 chrX 27583377 27583686 -149390454 + AluSx SINE Alu 1 306 0 2455 106 0 0 chrX 27583916 27584228 -149389912 + AluSx SINE Alu 1 312 0 1996 183 117 16 chrX 27584237 27584740 -149389400 - L1ME2 LINE L1 -249 5915 5351 2260 113 3 10 chrX 27584740 27585050 -149389090 - AluSq SINE Alu -5 308 1 1996 183 117 16 chrX 27585050 27585092 -149389048 - L1ME2 LINE L1 -813 5351 5315 24 0 0 0 chrX 27585092 27585116 -149389024 + AT_rich Low_complexity Low_complexity 1 24 0 777 163 54 134 chrX 27585206 27585568 -149388572 - L1ME1 LINE L1 -21 6226 5877 5508 80 16 12 chrX 27585601 27585962 -149388178 - L1PB1 LINE L1 -1 6150 5792 207 0 0 0 chrX 27585962 27585985 -149388155 + (TA)n Simple_repeat Simple_repeat 2 24 0 5508 80 16 12 chrX 27585985 27586375 -149387765 - L1PB1 LINE L1 -359 5792 5393 2509 82 0 0 chrX 27586375 27586679 -149387461 - AluSg SINE Alu -6 304 1 5508 80 16 12 chrX 27586679 27586734 -149387406 - L1PB1 LINE L1 -758 5393 5340 1362 188 110 0 chrX 27586732 27587041 -149387099 - L1ME1 LINE L1 -337 5898 5556 * 746 216 17 11 chrX 27587043 27587219 -149386921 - MLT1A1 LTR MaLR 0 365 189 1629 188 50 35 chrX 27587220 27587763 -149386377 - L1ME1 LINE L1 -682 5553 5014 680 248 51 9 chrX 27587767 27587981 -149386159 - L1ME1 LINE L1 -4333 2063 1841 2445 70 0 7 chrX 27588002 27588300 -149385840 - AluSc SINE Alu -13 296 1 1115 68 7 20 chrX 27588302 27588449 -149385691 - AluSq/x SINE Alu -167 145 1 803 236 28 31 chrX 27588454 27588708 -149385432 - L1ME1 LINE L1 -4576 1820 1568 691 156 13 27 chrX 27588709 27588725 -149385415 - MLT1A1 LTR MaLR -222 152 137 1935 160 24 0 chrX 27588725 27589018 -149385122 - AluJb SINE Alu -12 300 1 691 156 13 27 chrX 27589018 27589154 -149384986 - MLT1A1 LTR MaLR -237 137 2 249 33 0 0 chrX 27589246 27589276 -149384864 + (TG)n Simple_repeat Simple_repeat 2 31 0 785 267 72 74 chrX 27589299 27590053 -149384087 - L1ME1 LINE L1 -5052 1344 593 1797 127 58 34 chrX 27590111 27590402 -149383738 - AluSx SINE Alu -14 298 1 399 304 58 88 chrX 27590415 27590727 -149383413 - L1ME1 LINE L1 -5552 653 333 1800 150 37 17 chrX 27590727 27591027 -149383113 + AluJb SINE Alu 1 306 -6 399 304 58 88 chrX 27591027 27591141 -149382999 - L1ME1 LINE L1 -5872 333 217 1672 88 0 44 chrX 27591141 27591368 -149382772 - AluSq SINE Alu -15 298 82 2349 98 0 25 chrX 27591368 27591683 -149382457 - AluSq SINE Alu -5 308 1 399 304 58 88 chrX 27591683 27591768 -149382372 - L1ME1 LINE L1 -5986 219 155 22 35 0 0 chrX 27591790 27591819 -149382321 + AT_rich Low_complexity Low_complexity 1 29 0 181 0 0 65 chrX 27591919 27591950 -149382190 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2225 100 0 0 chrX 27591952 27592231 -149381909 - AluSx SINE Alu -31 281 3 2033 144 0 13 chrX 27592239 27592538 -149381602 - AluJo SINE Alu -17 295 1 2301 104 7 0 chrX 27592870 27593169 -149380971 - AluSx SINE Alu -11 301 1 225 268 14 28 chrX 27593217 27593288 -149380852 - L2 LINE L2 -2 3270 3201 2485 90 0 0 chrX 27594127 27594426 -149379714 - AluSx SINE Alu -13 299 1 1445 176 46 3 chrX 27594833 27594991 -149379149 - MER33 DNA MER1_type -2270 315 165 2395 86 3 7 chrX 27594991 27595293 -149378847 + AluSx SINE Alu 1 301 -11 1445 176 46 3 chrX 27595293 27595436 -149378704 - MER33 DNA MER1_type -2420 165 1 4240 59 10 29 chrX 27595516 27595690 -149378450 - PABL_A LTR ERV1 0 660 484 2211 110 0 23 chrX 27595690 27595991 -149378149 - AluSq SINE Alu -19 294 1 4240 59 10 29 chrX 27595991 27596395 -149377745 - PABL_A LTR ERV1 -176 484 93 24 32 0 0 chrX 27596397 27596428 -149377712 + AT_rich Low_complexity Low_complexity 1 31 0 2188 88 3 0 chrX 27597370 27597677 -149376463 - AluSx SINE Alu 0 308 1 655 71 0 0 chrX 27597677 27597762 -149376378 - PABL_A LTR ERV1 -575 85 1 183 80 0 0 chrX 27599764 27599789 -149374351 + (TCCCC)n Simple_repeat Simple_repeat 1 25 0 519 149 0 74 chrX 27600170 27600291 -149373849 + MER103 DNA DNA 8 119 -47 2426 90 0 0 chrX 27601004 27601303 -149372837 + AluSg SINE Alu 1 299 -11 2445 68 3 0 chrX 27601336 27601630 -149372510 - AluSp SINE Alu -18 295 1 1869 160 3 31 chrX 27601783 27602102 -149372038 + AluJb SINE Alu 1 310 -2 363 151 38 184 chrX 27602104 27602168 -149371972 - MER112 DNA MER1_type -102 158 86 2289 86 0 3 chrX 27602168 27602459 -149371681 - AluSg SINE Alu -19 291 2 363 151 38 184 chrX 27602459 27602579 -149371561 - MER112 DNA MER1_type -174 86 1 471 188 115 12 chrX 27602597 27602762 -149371378 - L1MC4 LINE L1 0 8042 7861 629 157 9 28 chrX 27602762 27602870 -149371270 + FRAM SINE Alu 58 163 -13 1086 236 40 88 chrX 27603638 27603887 -149370253 - MLT1I LTR MaLR 0 409 150 2650 59 0 0 chrX 27603887 27604192 -149369948 - AluY SINE Alu -6 305 1 2203 105 17 0 chrX 27604192 27604487 -149369653 - AluSx SINE Alu -12 300 1 1086 236 40 88 chrX 27604487 27604656 -149369484 - MLT1I LTR MaLR -257 152 10 1528 149 4 25 chrX 27604661 27604902 -149369238 + AluJo SINE Alu 1 236 -76 4164 152 29 3 chrX 27604904 27605597 -149368543 + MER50 LTR ERV1 1 711 -23 416 138 0 0 chrX 27605598 27605663 -149368477 + AluS SINE Alu 233 297 -13 1740 131 28 0 chrX 27606759 27607011 -149367129 + AluJo SINE Alu 40 298 -14 2669 80 19 21 chrX 27607446 27607821 -149366319 - THE1C LTR MaLR -1 374 1 363 121 0 0 chrX 27607859 27607917 -149366223 + (TCCCC)n Simple_repeat Simple_repeat 4 61 0 340 259 54 70 chrX 27608423 27608608 -149365532 - MER112 DNA MER1_type -40 220 39 1866 145 22 4 chrX 27608609 27608905 -149365235 + AluJo SINE Alu 1 301 0 2485 71 0 0 chrX 27608913 27609208 -149364932 + AluSq SINE Alu 7 301 -12 2213 96 6 35 chrX 27609252 27609564 -149364576 + AluSx SINE Alu 1 303 -9 1359 86 17 0 chrX 27609564 27609739 -149364401 + AluSg/x SINE Alu 132 309 -1 439 37 0 0 chrX 27609977 27610031 -149364109 + MADE1 DNA Mariner 1 54 -26 614 250 46 7 chrX 27610449 27610601 -149363539 - MIR SINE MIR -73 189 32 1010 232 60 0 chrX 27610705 27610938 -149363202 + L1M4 LINE L1 3775 4021 -2125 530 45 0 146 chrX 27610942 27610991 -149363149 - MADE1 DNA Mariner -4 76 44 2354 89 3 0 chrX 27610991 27611284 -149362856 + AluSp SINE Alu 1 294 -19 530 45 0 146 chrX 27611284 27611323 -149362817 - MADE1 DNA Mariner -36 44 1 1022 182 5 11 chrX 27611326 27611513 -149362627 + AluJb SINE Alu 126 311 -1 1467 204 6 57 chrX 27611514 27611608 -149362532 + L1M4 LINE L1 4011 4108 -2038 2298 117 0 3 chrX 27611608 27611907 -149362233 - AluSx SINE Alu -14 298 1 1467 204 6 57 chrX 27611907 27612165 -149361975 + L1M4 LINE L1 4108 4345 -1801 579 124 21 10 chrX 27612167 27612264 -149361876 + MER4A LTR ERV1 1 98 -566 1732 100 242 21 chrX 27612264 27612595 -149361545 + MER4A LTR ERV1 261 664 0 1535 216 31 68 chrX 27612595 27612731 -149361409 + L1M4 LINE L1 4344 4484 -1662 2358 111 0 0 chrX 27612731 27613038 -149361102 + AluSg SINE Alu 1 307 -3 1535 216 31 68 chrX 27613038 27613398 -149360742 + L1M4 LINE L1 4484 4819 -1327 1848 160 0 36 chrX 27613398 27613705 -149360435 + AluJo SINE Alu 3 298 -14 1535 216 31 68 chrX 27613705 27613762 -149360378 + L1M4 LINE L1 4819 4877 -1269 * 2698 193 63 20 chrX 27613760 27613920 -149360220 + L1MC/D LINE L1 4725 4877 -1482 2260 105 7 7 chrX 27613920 27614216 -149359924 + AluSx SINE Alu 1 296 -16 2698 193 63 20 chrX 27614216 27614359 -149359781 + L1MC/D LINE L1 4877 5012 -1347 2467 70 0 7 chrX 27614359 27614661 -149359479 + AluY SINE Alu 1 300 -11 2698 193 63 20 chrX 27614661 27615363 -149358777 + L1MC/D LINE L1 5012 5780 -579 2404 112 0 0 chrX 27615363 27615676 -149358464 + AluSq SINE Alu 1 313 0 325 196 119 53 chrX 27615727 27615880 -149358260 - L1MEc LINE L1 -2953 3262 2042 28 29 0 0 chrX 27615905 27615940 -149358200 + AT_rich Low_complexity Low_complexity 1 35 0 468 257 0 0 chrX 27616414 27616519 -149357621 - MLT1J LTR MaLR -1 510 406 1177 150 142 0 chrX 27616519 27616743 -149357397 + L1MA8 LINE L1 5839 6106 -185 2324 102 0 6 chrX 27616743 27617056 -149357084 + AluSp SINE Alu 2 312 -1 1177 150 142 0 chrX 27617056 27617091 -149357049 + L1MA8 LINE L1 6106 6135 -156 1840 130 78 0 chrX 27617091 27617398 -149356742 - AluSx SINE Alu 0 312 1 2148 117 3 26 chrX 27617895 27618202 -149355938 + AluJb SINE Alu 3 302 -10 396 329 70 4 chrX 27618271 27618499 -149355641 - L2 LINE L2 -219 3053 2811 834 328 0 0 chrX 27618503 27618741 -149355399 - MIR SINE MIR -10 252 15 207 133 0 44 chrX 27618790 27618835 -149355305 + (TTTC)n Simple_repeat Simple_repeat 3 45 0 2434 90 3 3 chrX 27618841 27619151 -149354989 - AluSq SINE Alu -3 310 1 1820 159 20 74 chrX 27619157 27619233 -149354907 - L1MB7 LINE L1 -14 6170 6091 1805 147 0 67 chrX 27619233 27619547 -149354593 - AluJo SINE Alu -17 295 3 1820 159 20 74 chrX 27619547 27619828 -149354312 - L1MB7 LINE L1 -93 6091 5839 2561 77 0 0 chrX 27619828 27620139 -149354001 - AluSq SINE Alu -2 311 1 1820 159 20 74 chrX 27620139 27620226 -149353914 - L1MB7 LINE L1 -345 5839 5749 1927 197 2 13 chrX 27620248 27620644 -149353496 - L1PB4 LINE L1 -1 6155 5764 251 306 96 106 chrX 27620646 27620921 -149353219 - L2 LINE L2 -568 2746 2474 2012 102 3 51 chrX 27620921 27621244 -149352896 - AluSx SINE Alu 0 309 1 251 306 96 106 chrX 27621244 27621382 -149352758 - L2 LINE L2 -840 2474 2336 305 334 103 23 chrX 27821884 27822186 -149151954 - L2 LINE L2 -1191 2123 1798 1001 244 56 30 chrX 27822223 27822489 -149151651 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 27822490 27822682 -149151458 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 27825407 27825776 -149148364 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 27826198 27826726 -149147414 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 27826989 27827152 -149146988 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 27827282 27827457 -149146683 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 27827946 27828562 -149145578 - L1ME2 LINE L1 -258 5906 5258 2029 247 138 25 chrX 27828956 27829478 -149144662 - MLT1G LTR MaLR 0 590 10 243 61 0 0 chrX 27830086 27830119 -149144021 + (CA)n Simple_repeat Simple_repeat 1 33 0 862 282 194 24 chrX 27830119 27830537 -149143603 + L2 LINE L2 2825 3313 0 297 109 0 0 chrX 27830556 27830602 -149143538 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 27830750 27831014 -149143126 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 27832424 27832606 -149141534 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 27832616 27832798 -149141342 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 27832969 27833011 -149141129 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 27833637 27834359 -149139781 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 27834410 27834473 -149139667 + MIR SINE MIR 200 262 0 1548 275 77 44 chrX 27834781 27836055 -149138085 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 27836064 27840210 -149133930 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 27840216 27840257 -149133883 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 27840257 27840622 -149133518 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 27840702 27840769 -149133371 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 27840798 27841024 -149133116 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 27841194 27841382 -149132758 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 27841408 27841541 -149132599 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 27841639 27841791 -149132349 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 27842275 27842762 -149131378 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 27842768 27843433 -149130707 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 27843433 27843861 -149130279 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 27843849 27844107 -149130033 - Charlie2 DNA MER1_type -2532 330 76 * 723 290 0 11 chrX 27844225 27844408 -149129732 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 27844918 27845930 -149128210 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 27846206 27846343 -149127797 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 27846376 27846479 -149127661 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 27846479 27846590 -149127550 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 27846868 27846954 -149127186 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 27847154 27847383 -149126757 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 27847383 27847418 -149126722 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 27848278 27848358 -149125782 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 27848680 27848705 -149125435 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 27848707 27848763 -149125377 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 27849366 27849568 -149124572 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 27850627 27850764 -149123376 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 27850991 27851465 -149122675 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 27851460 27851804 -149122336 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 27852120 27852430 -149121710 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 27852869 27853350 -149120790 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 27854245 27854414 -149119726 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 27854473 27856509 -149117631 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 27856550 27856581 -149117559 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 44041 36 6 1 chrX 27856584 27862710 -149111430 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 27862707 27863458 -149110682 - L1PA16 LINE L1 -2058 4088 3314 * 258 375 25 17 chrX 27863844 27863964 -149110176 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 27864325 27864382 -149109758 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 27864382 27864411 -149109729 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 27865736 27866331 -149107809 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 27866341 27867654 -149106486 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 27867654 27867968 -149106172 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 27867968 27868076 -149106064 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 27868756 27868782 -149105358 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 27868884 27869061 -149105079 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 27870905 27870950 -149103190 + (GA)n Simple_repeat Simple_repeat 1 45 0 2036 235 123 5 chrX 27871390 27871977 -149102163 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 27872235 27872262 -149101878 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 27872311 27872346 -149101794 + AT_rich Low_complexity Low_complexity 1 35 0 278 302 19 38 chrX 27873442 27873548 -149100592 - L2 LINE L2 -914 2400 2297 4789 215 54 27 chrX 27873591 27874850 -149099290 + L1MB7 LINE L1 1 1293 -5249 285 258 0 0 chrX 27874952 27875018 -149099122 - MLT1-int LTR MaLR -635 736 671 * 9753 219 28 17 chrX 27874993 27877807 -149096333 + L1MB7 LINE L1 2713 5558 -1086 2070 191 28 74 chrX 27877809 27878390 -149095750 - MLT2B3 LTR ERVL 0 554 1 4902 100 8 5 chrX 27878390 27879340 -149094800 - HERVL-B3 LTR ERVL 0 5654 4666 4364 165 12 48 chrX 27879362 27880468 -149093672 + L1MB7 LINE L1 5588 6663 -19 335 324 89 19 chrX 27880502 27880817 -149093323 - L2 LINE L2 -1152 2162 1826 315 306 67 22 chrX 27881112 27881246 -149092894 + MER5A DNA MER1_type 1 140 -49 943 179 6 0 chrX 27881330 27881486 -149092654 - MER5A DNA MER1_type -32 157 1 187 317 170 15 chrX 27881649 27881990 -149092150 - L2 LINE L2 -2295 1019 626 197 364 8 25 chrX 27882008 27882126 -149092014 - MIR SINE MIR -138 124 9 977 311 13 19 chrX 27882447 27882917 -149091223 + L1ME LINE L1 5355 5821 -349 5833 116 5 20 chrX 27883201 27884287 -149089853 + L1PA15 LINE L1 5080 6159 -6 799 285 66 31 chrX 27885448 27885767 -149088373 - MLT1I LTR MaLR 0 409 80 205 272 85 66 chrX 27886112 27886293 -149087847 - MIR3 SINE MIR -7 201 12 323 164 60 15 chrX 27886685 27886752 -149087388 + LTR67 LTR ERVL 484 553 -4 228 35 0 0 chrX 27887307 27887336 -149086804 - L1P LINE L1 -1055 5091 5063 2375 11 0 0 chrX 27887338 27887608 -149086532 + L1PA2 LINE L1 5885 6154 -1 31 68 0 0 chrX 27888139 27888198 -149085942 + AT_rich Low_complexity Low_complexity 1 59 0 181 348 169 0 chrX 27888459 27888548 -149085592 - MIR SINE MIR -81 127 24 348 24 0 0 chrX 27889369 27889410 -149084730 + (TTA)n Simple_repeat Simple_repeat 2 42 0 475 224 0 0 chrX 27889412 27889497 -149084643 - FRAM SINE Alu -30 146 62 262 288 72 9 chrX 27889497 27889608 -149084532 - MIR SINE MIR -61 201 84 4345 296 70 25 chrX 27889695 27891207 -149082933 + L2 LINE L2 793 2372 -942 761 291 104 13 chrX 27891258 27891574 -149082566 + MLT1I LTR MaLR 63 407 -2 507 96 0 0 chrX 27892040 27892113 -149082027 + L1PB4 LINE L1 6077 6149 -7 278 211 0 0 chrX 27892143 27892200 -149081940 + MLT1I LTR MaLR 346 402 -7 724 258 47 9 chrX 27892207 27892420 -149081720 + L2 LINE L2 2370 2590 -724 1079 249 23 34 chrX 27892426 27892780 -149081360 + MLT1E2 LTR MaLR 1 350 -276 773 86 43 0 chrX 27893201 27893318 -149080822 - L1PA12 LINE L1 0 6168 6047 9465 171 17 13 chrX 27893595 27895534 -149078606 - L1P LINE L1 -1413 4733 2787 7562 96 7 0 chrX 27895681 27896803 -149077337 + L1PA7 LINE L1 1641 2770 -3376 11980 92 19 15 chrX 27896803 27898614 -149075526 + L1PA7 LINE L1 3663 5486 -668 1984 116 0 0 chrX 27898614 27898882 -149075258 + AluSg1 SINE Alu 35 302 -7 11980 92 19 15 chrX 27898882 27899548 -149074592 + L1PA7 LINE L1 5486 6148 -6 594 134 0 0 chrX 27899591 27899673 -149074467 - AluS SINE Alu -228 84 3 794 303 67 0 chrX 27899780 27900018 -149074122 + MIR SINE MIR 9 262 0 198 0 0 0 chrX 27901093 27901115 -149073025 + (CA)n Simple_repeat Simple_repeat 1 22 0 2317 154 29 12 chrX 27902212 27902633 -149071507 + MSTA LTR MaLR 1 428 0 9819 157 11 11 chrX 27902633 27902774 -149071366 + MSTA-int LTR MaLR 1 140 -1511 2034 80 0 45 chrX 27902774 27903060 -149071080 - AluY SINE Alu -4 307 35 9819 157 11 11 chrX 27903060 27904568 -149069572 + MSTA-int LTR MaLR 140 1651 0 2424 157 34 2 chrX 27904568 27904983 -149069157 + MSTA LTR MaLR 1 428 0 187 338 75 38 chrX 27905090 27905170 -149068970 - L2 LINE L2 -39 3274 3192 456 304 29 108 chrX 27905206 27905446 -149068694 + L2 LINE L2 3034 3254 -18 240 374 112 5 chrX 27905465 27905652 -149068488 - L3b LINE CR1 -245 1338 1132 229 299 11 46 chrX 27905749 27905836 -149068304 + MIR SINE MIR 119 202 -60 22 0 0 0 chrX 27905923 27905945 -149068195 + AT_rich Low_complexity Low_complexity 1 22 0 1749 60 38 17 chrX 27906601 27906836 -149067304 - L1PA8A LINE L1 0 6131 5892 541 303 51 127 chrX 27907078 27908142 -149065998 - L2 LINE L2 -5 3267 2290 9178 175 27 11 chrX 27908147 27909836 -149064304 - L1M1 LINE L1 -5836 1729 13 208 292 26 131 chrX 27911262 27911529 -149062611 + L2 LINE L2 3072 3310 -3 267 316 59 52 chrX 27912935 27913071 -149061069 - MER5A DNA MER1_type -52 137 1 923 189 44 0 chrX 27913094 27913274 -149060866 - MER5A DNA MER1_type 0 189 2 679 275 58 47 chrX 27914476 27914574 -149059566 - L1MC4a LINE L1 -1945 5863 5768 1436 183 90 17 chrX 27914574 27914864 -149059276 - AluJo SINE Alu -1 311 1 679 275 58 47 chrX 27914864 27915018 -149059122 - L1MC4a LINE L1 -2040 5768 5603 1292 264 149 7 chrX 27915018 27915473 -149058667 + LTR33 LTR ERVL 1 520 -1 679 275 58 47 chrX 27915473 27915561 -149058579 - L1MC4a LINE L1 -2205 5603 5518 2187 110 0 7 chrX 27916069 27916369 -149057771 + AluSx SINE Alu 1 298 -14 677 262 74 15 chrX 27917318 27917520 -149056620 - MIR SINE MIR 0 262 49 628 289 28 41 chrX 27917522 27917636 -149056504 - LTR16A1 LTR ERVL 0 457 343 2950 191 4 11 chrX 27917636 27918180 -149055960 - MLT1F LTR MaLR -2 540 1 628 289 28 41 chrX 27918180 27918356 -149055784 - LTR16A1 LTR ERVL -114 343 171 248 168 50 12 chrX 27918738 27918899 -149055241 + (TA)n Simple_repeat Simple_repeat 2 168 0 442 223 23 0 chrX 27919135 27919265 -149054875 + (TATATG)n Simple_repeat Simple_repeat 3 135 0 210 71 0 0 chrX 27919389 27919417 -149054723 + (CA)n Simple_repeat Simple_repeat 2 29 0 4333 125 47 26 chrX 27919696 27920471 -149053669 + L1PA16 LINE L1 5370 6160 -6 322 248 73 37 chrX 27921229 27921338 -149052802 - MER5A DNA MER1_type 0 189 77 555 306 62 47 chrX 27921939 27922325 -149051815 - LTR16C LTR ERVL -17 474 83 305 329 82 29 chrX 27923328 27923498 -149050642 - L2 LINE L2 -2946 368 190 283 323 24 40 chrX 27923669 27923920 -149050220 + HAL1 LINE L1 1464 1710 -797 1131 261 45 39 chrX 27924948 27925525 -149048615 - L1MDa LINE L1 -4711 1369 833 2688 79 6 6 chrX 27925525 27925879 -149048261 - THE1A LTR MaLR 0 355 2 1131 261 45 39 chrX 27925879 27926197 -149047943 - L1MDa LINE L1 -5247 833 518 680 302 72 26 chrX 27926399 27926786 -149047354 - L1MDa LINE L1 -5652 418 14 1119 120 150 0 chrX 27926818 27927018 -149047122 - MER30 DNA MER1_type 0 230 1 1726 150 82 28 chrX 27927051 27927405 -149046735 - THE1C LTR MaLR 0 375 3 471 280 89 6 chrX 27927725 27927882 -149046258 + MIR SINE MIR 83 252 -10 494 117 26 0 chrX 27927885 27927962 -149046178 - Tigger7 DNA MER2_type -1 2486 2408 1153 236 81 9 chrX 27927964 27928286 -149045854 - MER2 DNA MER2_type 0 345 1 527 108 98 0 chrX 27928286 27928385 -149045755 - Tigger7 DNA MER2_type -81 2410 2302 1752 151 43 3 chrX 27928381 27928685 -149045455 - Tigger7 DNA MER2_type -415 318 3 455 321 22 27 chrX 27928790 27928974 -149045166 + MER5A DNA MER1_type 7 189 0 210 343 0 15 chrX 27929631 27929698 -149044442 + L2 LINE L2 3207 3272 0 1462 232 39 37 chrX 27930850 27931312 -149042828 + MLT1C LTR MaLR 1 463 -4 1109 256 53 64 chrX 27931319 27931772 -149042368 + LTR16C LTR ERVL 44 491 0 23 0 0 0 chrX 27932758 27932781 -149041359 + AT_rich Low_complexity Low_complexity 1 23 0 7403 79 6 5 chrX 27932781 27933907 -149040233 - L1MA2 LINE L1 0 6304 5177 1492 151 52 73 chrX 27936314 27936738 -149037402 - LTR37B LTR ERV1 -2 466 52 788 227 44 39 chrX 27937869 27938072 -149036068 + MER63A DNA MER1_type 7 210 0 498 304 18 0 chrX 27939100 27939212 -149034928 - MER91A DNA MER1_type -11 185 72 3325 195 69 7 chrX 27939467 27940386 -149033754 - Charlie2 DNA MER1_type -31 2831 1856 1086 186 69 75 chrX 27940376 27940709 -149033431 - Charlie2 DNA MER1_type -2451 331 1 * 826 164 5 62 chrX 27940723 27940918 -149033222 + MER53 DNA DNA 2 185 -4 226 167 0 0 chrX 27941102 27941138 -149033002 + L2 LINE L2 3269 3304 -9 485 249 301 41 chrX 27941331 27941650 -149032490 + L2 LINE L2 2706 3088 -225 228 143 0 0 chrX 27941741 27941776 -149032364 - MLT1J LTR MaLR -378 133 99 258 279 94 65 chrX 27942043 27942383 -149031757 - L2 LINE L2 -1723 1591 1242 208 135 0 0 chrX 27942391 27942428 -149031712 + (A)n Simple_repeat Simple_repeat 1 37 0 825 271 104 0 chrX 27942635 27942856 -149031284 + MIR SINE MIR 19 262 0 1302 303 39 7 chrX 27943143 27943556 -149030584 - LTR16A LTR ERVL 0 450 25 201 238 0 0 chrX 27943779 27943821 -149030319 + (TG)n Simple_repeat Simple_repeat 2 43 0 336 102 0 0 chrX 27944618 27944667 -149029473 + (TTTC)n Simple_repeat Simple_repeat 3 51 0 223 283 33 33 chrX 27944785 27944877 -149029263 - L2 LINE L2 -12 3301 3210 853 248 182 24 chrX 27945007 27945342 -149028798 + LTR16C LTR ERVL 102 489 -2 1733 143 65 17 chrX 27946297 27946591 -149027549 + AluSx SINE Alu 1 308 -4 1097 148 24 29 chrX 27948228 27948438 -149025702 + MER3 DNA MER1_type 1 209 0 377 277 62 0 chrX 27950353 27950483 -149023657 + L2 LINE L2 1915 2052 -1262 385 342 50 46 chrX 27950660 27950920 -149023220 + L2 LINE L2 2158 2418 -896 1269 282 92 13 chrX 27950930 27951377 -149022763 - LTR16C LTR ERVL -9 482 1 425 338 24 24 chrX 27951378 27951588 -149022552 + L2 LINE L2 2422 2631 -683 4269 156 12 1 chrX 27952061 27952806 -149021334 + L1MB1 LINE L1 5409 6161 -7 472 340 29 66 chrX 27952874 27953330 -149020810 + L2 LINE L2 2825 3263 -9 180 263 0 0 chrX 27953615 27953653 -149020487 - L2 LINE L2 -398 2915 2878 1330 213 50 25 chrX 27953653 27954242 -149019898 + L1MDa LINE L1 2381 2973 -3567 752 251 12 25 chrX 27954242 27954270 -149019870 + L1MDa LINE L1 3722 3749 -2791 2198 172 48 78 chrX 27954270 27954322 -149019818 - MLT2B1 LTR ERVL 0 520 468 525 16 0 0 chrX 27954322 27954384 -149019756 + (TG)n Simple_repeat Simple_repeat 1 62 0 2198 172 48 78 chrX 27954384 27954867 -149019273 - MLT2B1 LTR ERVL -52 468 1 752 251 12 25 chrX 27954867 27955081 -149019059 + L1MDa LINE L1 3749 3961 -2579 378 183 37 0 chrX 27955104 27955186 -149018954 + MLT1G1 LTR MaLR 511 595 0 222 158 26 0 chrX 27955601 27955639 -149018501 - MIR SINE MIR -8 254 216 678 225 48 89 chrX 27955663 27955934 -149018206 - L1MDa LINE L1 -6263 277 18 525 223 202 41 chrX 27955935 27956364 -149017776 - MLT1G1 LTR MaLR -61 534 1 822 283 32 8 chrX 27956479 27956726 -149017414 + MIR SINE MIR 7 259 -3 33 0 0 0 chrX 27956776 27956809 -149017331 + AT_rich Low_complexity Low_complexity 1 33 0 1087 263 91 8 chrX 27958016 27958388 -149015752 - LTR16C LTR ERVL -18 473 71 196 238 48 32 chrX 27958945 27959008 -149015132 + MER5A DNA MER1_type 126 189 0 1842 193 18 20 chrX 27959063 27959457 -149014683 + MLT2C1 LTR ERVL 1 393 -4 180 327 85 45 chrX 27959497 27959827 -149014313 - L2 LINE L2 -737 2577 2235 21 57 0 0 chrX 27960256 27960291 -149013849 + AT_rich Low_complexity Low_complexity 1 35 0 1606 274 96 6 chrX 27960317 27960795 -149013345 + LTR33 LTR ERVL 1 521 0 722 303 51 4 chrX 27960929 27961163 -149012977 + MIR SINE MIR 17 261 -1 323 189 14 14 chrX 27961758 27961832 -149012308 - MLT1K LTR MaLR -4 584 511 257 221 39 79 chrX 27961832 27961885 -149012255 - LTR67 LTR ERVL -4 553 432 3998 140 31 16 chrX 27962737 27963437 -149010703 + MER50 LTR ERV1 1 711 -23 293 250 0 0 chrX 27964538 27964602 -149009538 - L2 LINE L2 0 3313 3250 1401 293 30 5 chrX 27964997 27965431 -149008709 + LTR16A LTR ERVL 1 445 -5 3231 121 73 32 chrX 27966103 27966690 -149007450 - LTR9 LTR ERV1 -1 611 1 392 269 0 37 chrX 27966716 27966824 -149007316 + L2 LINE L2 3169 3272 0 634 293 110 26 chrX 27967822 27968095 -149006045 + HAL1 LINE L1 855 1150 -1357 229 220 0 0 chrX 27968095 27968145 -149005995 - MLT2F LTR ERVL 0 663 614 2172 107 0 14 chrX 27968181 27968651 -149005489 + AluSp SINE Alu 1 466 0 1473 183 20 58 chrX 27968661 27969006 -149005134 - MLT2C1 LTR ERVL -65 332 1 1045 253 152 46 chrX 27969019 27969675 -149004465 + HAL1 LINE L1 1178 1903 -604 21162 171 12 10 chrX 27969783 27974507 -148999633 - L1PA11 LINE L1 -2 7610 2085 3000 61 13 0 chrX 27974507 27974898 -148999242 - L1PA7 LINE L1 -1 6153 5758 21162 171 12 10 chrX 27974898 27976986 -148997154 - L1PA11 LINE L1 -5527 2085 2 332 102 0 0 chrX 27976988 27977037 -148997103 + LTR24B LTR ERV1 521 569 -7 750 282 14 29 chrX 27977037 27977314 -148996826 + LTR24B-int LTR ERV1 2 274 -4849 1779 146 8 36 chrX 27977370 27977726 -148996414 + L1MB8 LINE L1 5833 6178 0 227 250 0 26 chrX 27978146 27978221 -148995919 + L3 LINE CR1 1464 1536 -41 452 177 203 57 chrX 27978221 27978379 -148995761 - MER5A DNA MER1_type 0 189 9 186 275 88 12 chrX 27978350 27978430 -148995710 + MIR3 SINE MIR 110 195 -13 * 29 28 0 0 chrX 27978910 27978946 -148995194 + AT_rich Low_complexity Low_complexity 1 36 0 328 272 33 33 chrX 27979013 27979197 -148994943 - HAL1 LINE L1 -102 2405 2222 312 211 40 13 chrX 27979496 27979572 -148994568 - HAL1 LINE L1 -355 2152 2075 1214 158 83 37 chrX 27979722 27980064 -148994076 - MSTD LTR MaLR 0 396 1 664 224 101 13 chrX 27980267 27980495 -148993645 - MER112 DNA MER1_type -4 256 9 457 240 131 26 chrX 27980760 27980989 -148993151 - MER97c DNA MER1_type? -2 1088 836 2067 236 60 33 chrX 27981082 27981634 -148992506 - MER97a DNA MER1_type? -324 570 4 338 246 116 65 chrX 27983202 27983417 -148990723 + L1ME4a LINE L1 5398 5623 -498 * 355 258 8 58 chrX 27983410 27983530 -148990610 + L1ME3A LINE L1 5558 5671 -499 2633 129 28 56 chrX 27983530 27983623 -148990517 - LTR47A LTR ERVL 0 452 358 5813 123 8 10 chrX 27983623 27985006 -148989134 + L1PA13 LINE L1 4775 6159 -4 2633 129 28 56 chrX 27985006 27985377 -148988763 - LTR47A LTR ERVL -94 358 1 1833 219 53 31 chrX 27985377 27985866 -148988274 + L1ME3A LINE L1 5667 6166 -4 681 299 58 13 chrX 27985877 27986188 -148987952 + L1ME4a LINE L1 5610 5934 -187 42734 34 22 2 chrX 27986954 27992984 -148981156 - L1PA2 LINE L1 -2 6153 3 22 35 0 0 chrX 27993264 27993293 -148980847 + AT_rich Low_complexity Low_complexity 1 29 0 1596 218 50 40 chrX 27993758 27994258 -148979882 - MLT1D LTR MaLR 0 505 1 188 42 0 0 chrX 27994260 27994284 -148979856 + L2 LINE L2 3243 3266 -6 26 0 0 0 chrX 27994598 27994624 -148979516 + AT_rich Low_complexity Low_complexity 1 26 0 335 236 22 11 chrX 27995505 27995594 -148978546 + MER5B DNA MER1_type 31 120 -58 258 234 13 13 chrX 27995612 27995689 -148978451 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 429 215 89 45 chrX 27995855 27996102 -148978038 - L1MC5 LINE L1 -226 7735 7478 718 256 60 12 chrX 27996122 27996372 -148977768 - L1MC5 LINE L1 -1958 5850 5589 16126 197 31 23 chrX 27996994 27997385 -148976755 + L1PA15 LINE L1 1171 1557 -5259 2332 101 48 22 chrX 27997385 27997740 -148976400 + THE1B LTR MaLR 1 364 0 16126 197 31 23 chrX 27997740 28000267 -148973873 + L1PA15 LINE L1 1557 4061 -2755 189 0 0 0 chrX 28000267 28000288 -148973852 + (TAA)n Simple_repeat Simple_repeat 1 21 0 16126 197 31 23 chrX 28000288 28002968 -148971172 + L1PA15 LINE L1 4061 6816 0 2380 214 34 6 chrX 28003520 28004025 -148970115 + LTR53 LTR ERVL 1 519 0 200 211 96 19 chrX 28004026 28004078 -148970062 + MIR SINE MIR 160 215 -47 264 232 43 0 chrX 28004265 28004334 -148969806 + MIR SINE MIR 183 254 -8 427 333 42 11 chrX 28004925 28005114 -148969026 + MIR3 SINE MIR 3 197 -11 206 330 85 9 chrX 28005125 28005231 -148968909 + MIR SINE MIR 21 134 -128 1384 282 116 19 chrX 28005283 28005985 -148968155 + L2 LINE L2 2495 3313 0 452 225 18 9 chrX 28006103 28006214 -148967926 + L1MCa LINE L1 163 274 -6290 375 187 13 0 chrX 28006220 28006295 -148967845 - L1MCb LINE L1 -5400 645 570 4107 210 137 38 chrX 28006324 28007788 -148966352 + L1MCa LINE L1 109 1862 -4702 3124 107 2 7 chrX 28007788 28008246 -148965894 + L1PB1 LINE L1 5695 6150 -1 4107 210 137 38 chrX 28008246 28008930 -148965210 + L1MCa LINE L1 1862 2477 -4087 35 0 0 0 chrX 28008960 28008995 -148965145 + AT_rich Low_complexity Low_complexity 1 35 0 7637 28 0 0 chrX 28008995 28009894 -148964246 - L1PA3 LINE L1 -3 6152 5254 6233 103 3 56 chrX 28009898 28011131 -148963009 + L1MC/D LINE L1 4465 5630 -743 1190 190 0 22 chrX 28011127 28011353 -148962787 + L1MC3 LINE L1 5487 5707 -637 * 496 203 78 8 chrX 28011352 28011480 -148962660 + L1M1 LINE L1 5 141 -7424 * 7317 160 17 22 chrX 28011469 28013745 -148960395 + L1M1 LINE L1 2929 5192 -2373 2349 109 44 0 chrX 28013745 28014125 -148960015 + L1MA2 LINE L1 5904 6304 0 6967 165 35 30 chrX 28014144 28015561 -148958579 + L1MC3 LINE L1 5693 7116 -669 1766 158 11 45 chrX 28015562 28015942 -148958198 + L1MA7 LINE L1 5915 6281 -10 927 129 12 18 chrX 28015965 28016128 -148958012 + L1MC3 LINE L1 7617 7778 -7 1876 201 38 40 chrX 28016820 28017317 -148956823 - L1ME3A LINE L1 -29 6141 5646 642 299 46 11 chrX 28017364 28017591 -148956549 + MIR SINE MIR 30 261 -1 1675 233 119 53 chrX 28018141 28018819 -148955321 + MER50 LTR ERV1 10 732 -2 206 250 0 15 chrX 28019090 28019158 -148954982 + CT-rich Low_complexity Low_complexity 2 68 0 996 285 88 21 chrX 28019173 28019783 -148954357 - L1ME4a LINE L1 -206 5915 5265 4457 71 5 2 chrX 28020331 28020923 -148953217 - L1PB2 LINE L1 -1 6150 5557 215 259 12 82 chrX 28020923 28021008 -148953132 - L2 LINE L2 -12 3260 3182 415 343 36 0 chrX 28021259 28021396 -148952744 + MIR SINE MIR 10 151 -111 2296 108 0 6 chrX 28021396 28021710 -148952430 + AluSx SINE Alu 1 312 0 390 304 89 15 chrX 28022621 28022756 -148951384 - MIR SINE MIR -113 149 5 24 32 0 0 chrX 28023677 28023708 -148950432 + AT_rich Low_complexity Low_complexity 1 31 0 457 304 77 5 chrX 28024988 28025182 -148948958 - L2 LINE L2 0 3313 3106 180 0 0 0 chrX 28025392 28025412 -148948728 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 268 190 26 27 chrX 28026062 28026139 -148948001 + L1MC4 LINE L1 1991 6989 -1333 2791 164 66 77 chrX 28026168 28026741 -148947399 - MLT1F1 LTR MaLR 0 567 1 29 0 0 0 chrX 28026854 28026883 -148947257 + AT_rich Low_complexity Low_complexity 1 29 0 455 276 12 77 chrX 28026993 28027163 -148946977 - MIR SINE MIR -92 170 12 306 358 64 32 chrX 28027260 28027447 -148946693 - L2 LINE L2 -217 3055 2863 288 0 0 0 chrX 28028490 28028522 -148945618 + (CA)n Simple_repeat Simple_repeat 2 33 0 232 253 61 40 chrX 28029528 28029627 -148944513 - MLT1I LTR MaLR -20 389 289 756 252 67 10 chrX 28030251 28030472 -148943668 - MIR SINE MIR -6 256 25 2844 91 65 19 chrX 28030702 28031130 -148943010 + LTR7 LTR ERV1 1 448 -2 1038 240 32 0 chrX 28031242 28031362 -148942778 - MER58A DNA MER1_type -2196 224 92 459 0 0 0 chrX 28031362 28031413 -148942727 + (CAATA)n Simple_repeat Simple_repeat 1 51 0 1038 240 32 0 chrX 28031413 28031509 -148942631 - MER58A DNA MER1_type -2328 92 1 627 317 242 9 chrX 28031606 28032073 -148942067 - L2 LINE L2 -1 3312 2745 991 233 46 13 chrX 28032862 28033208 -148940932 + LTR16A LTR ERVL 25 450 0 241 171 271 0 chrX 28033767 28033837 -148940303 + MIR SINE MIR 168 256 -6 26 50 0 0 chrX 28034658 28034698 -148939442 + AT_rich Low_complexity Low_complexity 1 40 0 1223 140 34 194 chrX 28035305 28035497 -148938643 - LTR48B LTR ERV1 0 644 563 10228 30 7 156 chrX 28035497 28037127 -148937013 - SVA Other Other 0 1386 1 1223 140 34 194 chrX 28037127 28037390 -148936750 - LTR48B LTR ERV1 -81 563 260 259 96 77 58 chrX 28037405 28037457 -148936683 - LTR48B LTR ERV1 -556 88 36 390 314 140 29 chrX 28037485 28037870 -148936270 + L1ME4a LINE L1 4607 5034 -1112 194 54 0 54 chrX 28037883 28037920 -148936220 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 860 213 0 0 chrX 28037988 28038143 -148935997 + MER58B DNA MER1_type 187 341 0 313 294 41 64 chrX 28038176 28038394 -148935746 + L1ME4a LINE L1 5173 5385 -761 2286 149 18 12 chrX 28038436 28038771 -148935369 + MER1B DNA MER1_type 1 337 0 523 291 69 51 chrX 28038787 28038915 -148935225 + L1ME4a LINE L1 5477 5601 -520 2444 67 3 0 chrX 28038915 28039212 -148934928 - AluY SINE Alu -13 298 1 523 291 69 51 chrX 28039212 28039433 -148934707 + L1ME4a LINE L1 5601 5832 -289 23 0 0 0 chrX 28039436 28039459 -148934681 + AT_rich Low_complexity Low_complexity 1 23 0 1475 158 26 84 chrX 28041498 28041808 -148932332 + AluJo SINE Alu 1 292 -20 323 299 96 69 chrX 28041817 28042121 -148932019 + L1ME4a LINE L1 5410 5733 -388 2816 105 17 7 chrX 28042121 28042530 -148931610 + L1MA2 LINE L1 5892 6304 0 323 299 96 69 chrX 28042530 28042717 -148931423 + L1ME4a LINE L1 5733 5914 -207 653 202 8 0 chrX 28043026 28043150 -148930990 - L1MA10 LINE L1 -7 6327 6203 289 162 108 0 chrX 28043231 28043305 -148930835 + L1ME4a LINE L1 6037 6118 -3 198 0 0 0 chrX 28044043 28044065 -148930075 + (TG)n Simple_repeat Simple_repeat 2 23 0 261 214 0 18 chrX 28045122 28045178 -148928962 + MIR SINE MIR 97 151 -111 1911 269 26 2 chrX 28046174 28046635 -148927505 + LTR16C LTR ERVL 2 473 -18 222 208 0 0 chrX 28046860 28046913 -148927227 + GA-rich Low_complexity Low_complexity 1 53 0 616 148 70 0 chrX 28047957 28048072 -148926068 - L2 LINE L2 0 3313 3191 658 301 78 10 chrX 28048436 28048845 -148925295 + L1M4 LINE L1 4013 4449 -1697 192 40 0 0 chrX 28048912 28048937 -148925203 + (TG)n Simple_repeat Simple_repeat 2 26 0 341 219 0 24 chrX 28049046 28049128 -148925012 + L1MC4 LINE L1 6624 6703 -1339 390 173 0 0 chrX 28050623 28050698 -148923442 + CT-rich Low_complexity Low_complexity 4 78 0 579 264 72 0 chrX 28051996 28052163 -148921977 + MIR SINE MIR 53 231 -31 1022 275 196 0 chrX 28052253 28052595 -148921545 - MLT1I LTR MaLR 0 409 1 200 348 29 0 chrX 28052718 28052787 -148921353 + L2 LINE L2 2996 3066 -206 200 234 0 0 chrX 28053603 28053650 -148920490 - L2 LINE L2 -5 3308 3262 265 368 71 64 chrX 28053701 28053997 -148920143 + L2 LINE L2 2932 3229 -43 248 329 37 0 chrX 28054209 28054291 -148919849 + MIR SINE MIR 66 150 -58 2169 239 57 10 chrX 28054368 28054861 -148919279 + MLT1G1 LTR MaLR 75 590 -5 903 251 60 32 chrX 28055599 28055807 -148918333 + MIR SINE MIR 5 223 -39 2641 148 52 2 chrX 28055807 28056213 -148917927 + MSTB LTR MaLR 1 426 0 903 251 60 32 chrX 28056213 28056255 -148917885 + MIR SINE MIR 223 262 0 949 285 69 26 chrX 28056653 28057074 -148917066 - LTR16A LTR ERVL -5 445 7 580 254 133 0 chrX 28057422 28057595 -148916545 - MIR SINE MIR -18 244 49 1191 260 62 18 chrX 28058813 28059201 -148914939 + LTR33 LTR ERVL 90 494 -27 387 296 17 9 chrX 28059203 28059318 -148914822 - MER94 DNA DNA 0 134 19 642 279 72 71 chrX 28060656 28061153 -148912987 + MLT1G3 LTR MaLR 1 588 -7 417 341 98 0 chrX 28061168 28061414 -148912726 + L3b LINE CR1 1112 1381 -202 2057 142 42 12 chrX 28061926 28062258 -148911882 - MER2 DNA MER2_type -1 343 2 275 269 120 37 chrX 28063412 28063442 -148910698 + MIR SINE MIR 119 145 -117 216 97 0 0 chrX 28063442 28063473 -148910667 + (TAA)n Simple_repeat Simple_repeat 2 32 0 275 269 120 37 chrX 28063473 28063550 -148910590 + MIR SINE MIR 145 235 -27 321 276 47 24 chrX 28063700 28063827 -148910313 + MIR SINE MIR 133 262 0 1175 296 53 42 chrX 28063935 28064391 -148909749 - LTR16B LTR ERVL 0 464 4 427 262 123 48 chrX 28064937 28065394 -148908746 - LTR48 LTR ERV1 0 739 142 23 0 0 0 chrX 28066085 28066108 -148908032 + AT_rich Low_complexity Low_complexity 1 23 0 355 308 77 6 chrX 28066328 28066497 -148907643 + L1MC4a LINE L1 5682 5862 -1946 4533 83 76 12 chrX 28066969 28067574 -148906566 - LTR9B LTR ERV1 0 644 1 180 179 0 0 chrX 28068072 28068111 -148906029 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 28068157 28068179 -148905961 + AT_rich Low_complexity Low_complexity 1 22 0 341 311 84 44 chrX 28068508 28068781 -148905359 + L1MEd LINE L1 599 882 -5237 31390 112 14 59 chrX 28068827 28075298 -148898842 + L1PA7 LINE L1 12 6183 0 443 305 84 30 chrX 28075266 28075856 -148898284 + L1MEd LINE L1 936 1580 -4747 * 1363 200 56 7 chrX 28075858 28076143 -148897997 - MLT1E LTR MaLR 0 593 295 387 273 19 7 chrX 28076334 28076488 -148897652 + L1MEd LINE L1 3286 3441 -2688 672 248 96 39 chrX 28076532 28077057 -148897083 - MER34B LTR ERV1 0 585 5 1548 259 30 24 chrX 28077074 28077700 -148896440 + L1MEd LINE L1 3508 4137 -1992 1744 157 3 65 chrX 28079095 28079419 -148894721 - AluJb SINE Alu -8 304 1 235 195 0 134 chrX 28079495 28079577 -148894563 + MER91B DNA MER1_type 9 79 -111 441 0 0 0 chrX 28079908 28079957 -148894183 + (TG)n Simple_repeat Simple_repeat 2 50 0 509 199 35 115 chrX 28080121 28080347 -148893793 + MLT1D LTR MaLR 1 208 -297 3037 193 40 19 chrX 28080422 28081003 -148893137 - MLT1E LTR MaLR 0 593 1 1848 113 30 0 chrX 28081025 28081170 -148892970 + L1MA9 LINE L1 6002 6141 -171 342 0 0 0 chrX 28081170 28081208 -148892932 + (CA)n Simple_repeat Simple_repeat 1 38 0 1848 113 30 0 chrX 28081208 28081362 -148892778 + L1MA9 LINE L1 6141 6310 -2 262 355 0 0 chrX 28081369 28081431 -148892709 + MER91B DNA MER1_type 128 189 -1 294 304 39 10 chrX 28082144 28082246 -148891894 + L2 LINE L2 2911 3015 -257 232 286 11 0 chrX 28082401 28082492 -148891648 - L1MC4 LINE L1 -11 8031 7940 412 317 60 26 chrX 28082586 28082968 -148891172 - L1MC5 LINE L1 -197 7764 7370 394 233 62 27 chrX 28083004 28083150 -148890990 - L1MC4 LINE L1 -787 8066 7916 1453 257 94 15 chrX 28083309 28083764 -148890376 - LTR16C LTR ERVL 0 491 1 892 257 239 19 chrX 28083766 28084643 -148889497 - L1MC4 LINE L1 -900 7719 6843 246 281 38 50 chrX 28084643 28084773 -148889367 - L1PA8A LINE L1 -305 5826 5697 321 26 0 0 chrX 28084773 28084811 -148889329 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 281 38 50 chrX 28084811 28084840 -148889300 - L1PA8A LINE L1 -434 5697 5669 348 278 110 43 chrX 28084920 28085312 -148888828 - L1MC4 LINE L1 -1945 5012 4595 * 1564 261 68 38 chrX 28085311 28085843 -148888297 + L1M4b LINE L1 29 576 -6283 2080 235 83 42 chrX 28085843 28086502 -148887638 - L1MC4 LINE L1 -5321 1538 853 278 194 16 16 chrX 28086513 28086575 -148887565 + MLT1H1 LTR MaLR 69 130 -425 622 238 108 30 chrX 28086592 28086867 -148887273 + MLT1H1 LTR MaLR 244 553 -2 1682 151 0 74 chrX 28087033 28087357 -148886783 + AluJb SINE Alu 1 300 -12 364 358 85 24 chrX 28087771 28088101 -148886039 - L1M4 LINE L1 -1220 5628 5279 309 308 62 0 chrX 28088112 28088320 -148885820 - L1M4 LINE L1 -1700 5148 4928 277 300 25 0 chrX 28088375 28088495 -148885645 - L1M3 LINE L1 -707 5476 5354 21 0 0 0 chrX 28088589 28088610 -148885530 + AT_rich Low_complexity Low_complexity 1 21 0 237 128 0 0 chrX 28088674 28088713 -148885427 + MLT1B LTR MaLR 58 96 -294 329 269 68 10 chrX 28088716 28089024 -148885116 - L1M3 LINE L1 -2929 3217 2892 420 287 34 72 chrX 28089540 28090189 -148883951 - L1M3 LINE L1 -3328 2818 2195 721 214 28 7 chrX 28091084 28091229 -148882911 - MIR SINE MIR -109 153 6 1561 201 124 45 chrX 28092363 28092831 -148881309 + MLT1D LTR MaLR 1 505 0 1810 162 43 0 chrX 28093682 28093821 -148880319 + MER46B DNA MER2_type 1 40 -2691 1858 104 0 4 chrX 28093821 28094072 -148880068 + AluSx SINE Alu 48 297 -15 1810 162 43 0 chrX 28094072 28094277 -148879863 + MER46B DNA MER2_type 40 235 -1 915 156 61 28 chrX 28094642 28094863 -148879277 - AluSg/x SINE Alu 0 351 125 319 248 8 53 chrX 28095013 28095146 -148878994 - L1M4 LINE L1 -2798 4050 3924 1996 137 7 0 chrX 28095151 28095435 -148878705 - AluSx SINE Alu -7 305 20 572 259 58 42 chrX 28097166 28097355 -148876785 - MIR SINE MIR 0 262 71 188 295 82 0 chrX 28097546 28097607 -148876533 - L2 LINE L2 -4 3268 3203 2368 84 0 19 chrX 28097673 28097982 -148876158 + AluSg SINE Alu 1 303 -7 2253 146 8 11 chrX 28098012 28098375 -148875765 + MLT1A1 LTR MaLR 4 365 0 2123 69 20 56 chrX 28098734 28099037 -148875103 - AluSc SINE Alu -10 299 8 309 263 85 8 chrX 28099077 28099195 -148874945 - L1MC5 LINE L1 -61 7900 7774 1630 234 41 31 chrX 28099216 28099755 -148874385 - L1ME2 LINE L1 -12 6152 5609 1856 123 7 18 chrX 28099891 28100176 -148873964 + AluSx SINE Alu 30 311 -1 884 235 0 14 chrX 28100401 28100618 -148873522 + L1PB4 LINE L1 5941 6154 -2 310 341 39 39 chrX 28100995 28101174 -148872966 - MER5A DNA MER1_type -7 182 4 2092 101 4 4 chrX 28102295 28102613 -148871527 + AluSc SINE Alu 6 323 0 463 279 0 48 chrX 28102784 28102931 -148871209 - MER5A DNA MER1_type -1 188 49 622 291 24 47 chrX 28102971 28103311 -148870829 + L1MDa LINE L1 2 333 -6207 2234 243 48 48 chrX 28103855 28105052 -148869088 + L1MDa LINE L1 909 2107 -4433 7986 190 18 28 chrX 28105062 28105499 -148868641 - L1M4 LINE L1 -2973 3875 3435 1908 43 0 0 chrX 28105499 28105734 -148868406 - L1PA4 LINE L1 -2 6153 5919 7986 190 18 28 chrX 28105734 28107285 -148866855 - L1M4 LINE L1 -3413 3435 1919 1956 106 4 0 chrX 28107285 28107541 -148866599 + AluSp SINE Alu 39 295 -18 7986 190 18 28 chrX 28107541 28108290 -148865850 - L1M4 LINE L1 -4929 1919 1164 383 303 28 0 chrX 28108494 28108603 -148865537 + MIR SINE MIR 127 238 -24 450 292 48 20 chrX 28109219 28109469 -148864671 - L1MC4a LINE L1 -1907 5901 5645 623 254 33 81 chrX 28109979 28110217 -148863923 - MIR SINE MIR -32 230 2 570 203 45 15 chrX 28110506 28110639 -148863501 + MIR SINE MIR 31 167 -95 2772 13 0 10 chrX 28111514 28111824 -148862316 - AluYb8 SINE Alu -11 307 1 749 230 35 11 chrX 28112536 28112659 -148861481 + MER5B DNA MER1_type 1 131 -47 279 0 0 0 chrX 28112659 28112690 -148861450 + (TG)n Simple_repeat Simple_repeat 2 32 0 749 230 35 11 chrX 28112690 28112740 -148861400 + MER5B DNA MER1_type 131 178 0 500 309 44 0 chrX 28112870 28113033 -148861107 + MIR SINE MIR 36 204 -58 533 306 105 31 chrX 28113113 28113436 -148860704 + L3 LINE CR1 665 1011 -566 1090 258 98 44 chrX 28113508 28113915 -148860225 - L2 LINE L2 0 3313 2885 724 160 37 86 chrX 28114550 28114666 -148859474 + MLT1H LTR MaLR 3 108 -441 2571 24 7 0 chrX 28114666 28114958 -148859182 - AluY SINE Alu -17 294 1 724 160 37 86 chrX 28114958 28115028 -148859112 + MLT1H LTR MaLR 108 180 -369 433 245 185 43 chrX 28115846 28116030 -148858110 - MIR SINE MIR -6 256 47 207 308 0 0 chrX 28118670 28118722 -148855418 - MIR3 SINE MIR -34 174 123 1041 131 107 94 chrX 28118885 28118935 -148855205 - L1ME1 LINE L1 -249 5917 5869 776 184 0 0 chrX 28118935 28119060 -148855080 - FLAM_A SINE Alu -8 125 1 1041 131 107 94 chrX 28119060 28119307 -148854833 - L1ME1 LINE L1 -297 5869 5616 515 263 25 0 chrX 28119307 28119425 -148854715 + MIR3 SINE MIR 43 163 -45 181 238 0 24 chrX 28119616 28119658 -148854482 + L3 LINE CR1 1523 1563 -14 2220 227 59 9 chrX 28119840 28120365 -148853775 + L1MDb LINE L1 7 557 -5852 5184 140 39 47 chrX 28120408 28121465 -148852675 + L1MD2 LINE L1 5302 6350 -9 436 220 108 65 chrX 28122281 28122513 -148851627 + LTR16A1 LTR ERVL 216 457 0 433 313 79 55 chrX 28122523 28122993 -148851147 - LTR16C LTR ERVL -9 482 2 855 234 11 6 chrX 28123428 28123603 -148850537 + MER5A DNA MER1_type 8 183 -6 783 278 70 82 chrX 28123879 28123984 -148850156 - L2 LINE L2 -11 3302 3197 351 0 0 0 chrX 28123984 28124023 -148850117 + (TG)n Simple_repeat Simple_repeat 1 39 0 783 278 70 82 chrX 28124023 28124317 -148849823 - L2 LINE L2 -116 3197 2908 22 0 0 0 chrX 28126477 28126499 -148847641 + AT_rich Low_complexity Low_complexity 1 22 0 437 214 69 0 chrX 28127027 28127158 -148846982 - MER103 DNA DNA -20 146 7 430 235 141 7 chrX 28127885 28128034 -148846106 - LTR33 LTR ERVL -6 515 347 1511 342 89 41 chrX 28128896 28129768 -148844372 + L2 LINE L2 482 1311 -2003 1422 198 86 18 chrX 28129768 28130046 -148844094 - AluJo SINE Alu -15 297 1 1511 342 89 41 chrX 28130046 28130338 -148843802 + L2 LINE L2 1311 1715 -1599 264 111 0 0 chrX 28130338 28130383 -148843757 + (CA)n Simple_repeat Simple_repeat 1 45 0 1511 342 89 41 chrX 28130383 28130502 -148843638 + L2 LINE L2 1715 1827 -1487 270 320 33 0 chrX 28130745 28130867 -148843273 + MLT1I LTR MaLR 284 409 0 707 333 66 56 chrX 28130867 28131620 -148842520 + L2 LINE L2 1830 3313 0 218 32 32 0 chrX 28132134 28132165 -148841975 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4572 176 30 19 chrX 28132373 28134529 -148839611 + L1MB7 LINE L1 3886 6173 -11 1027 161 10 0 chrX 28134558 28134751 -148839389 + L1PB1 LINE L1 6 200 -6663 9832 127 49 9 chrX 28134751 28136768 -148837372 + L1PB1 LINE L1 634 2935 -3927 438 110 96 0 chrX 28136768 28136841 -148837299 + MADE1 DNA Mariner 1 80 0 9832 127 49 9 chrX 28136841 28137720 -148836420 + L1PB1 LINE L1 2935 3777 -3085 5910 132 15 10 chrX 28137722 28138279 -148835861 + L1PB1 LINE L1 5542 6095 -772 2430 111 40 0 chrX 28138279 28138629 -148835511 + THE1B LTR MaLR 1 364 0 5910 132 15 10 chrX 28138629 28139387 -148834753 + L1PB1 LINE L1 6095 6866 -1 448 229 149 37 chrX 28139640 28139828 -148834312 + MIR SINE MIR 40 248 -14 184 162 0 54 chrX 28139795 28139832 -148834308 + L2 LINE L2 3261 3295 -18 * 22 0 0 0 chrX 28140511 28140533 -148833607 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 28140597 28140619 -148833521 + AT_rich Low_complexity Low_complexity 1 22 0 1014 212 36 40 chrX 28140872 28141146 -148832994 + MLT1D LTR MaLR 147 419 -86 3028 138 10 14 chrX 28141152 28141660 -148832480 - MLT2B2 LTR ERVL -8 507 2 525 157 0 0 chrX 28141661 28141750 -148832390 + MLT1D LTR MaLR 538 626 0 204 40 0 0 chrX 28142469 28142494 -148831646 + (CAAAG)n Simple_repeat Simple_repeat 2 26 0 264 327 140 9 chrX 28142891 28142998 -148831142 - L2 LINE L2 -11 3261 3141 292 197 41 62 chrX 28143055 28143170 -148830970 - MLT1F LTR MaLR 0 549 439 496 239 9 0 chrX 28143703 28143816 -148830324 - MLT1L LTR MaLR -384 231 118 1391 317 168 19 chrX 28143861 28144945 -148829195 - L2 LINE L2 -508 2806 1561 1979 160 0 0 chrX 28145084 28145378 -148828762 - AluJb SINE Alu -18 294 1 398 247 41 10 chrX 28145404 28145501 -148828639 - MLT1L LTR MaLR -365 250 151 344 248 41 41 chrX 28145659 28145804 -148828336 - L1ME4a LINE L1 -3 6118 5974 255 31 0 0 chrX 28145860 28145892 -148828248 + (TG)n Simple_repeat Simple_repeat 1 32 0 300 282 104 50 chrX 28146182 28146384 -148827756 - L1ME4a LINE L1 -823 5323 5111 304 303 55 28 chrX 28146387 28146641 -148827499 + MIR SINE MIR 2 262 0 38 39 0 0 chrX 28146646 28146698 -148827442 + AT_rich Low_complexity Low_complexity 1 52 0 255 250 0 0 chrX 28147212 28147272 -148826868 + (TA)n Simple_repeat Simple_repeat 2 61 0 1016 279 16 0 chrX 28147420 28147667 -148826473 + MIR SINE MIR 2 252 -10 1322 165 8 0 chrX 28148516 28148752 -148825388 - L1MB4 LINE L1 -57 6123 5886 191 246 92 0 chrX 28150009 28150074 -148824066 + L3b LINE CR1 1319 1389 -194 268 261 90 27 chrX 28150857 28150968 -148823172 + MLT1L LTR MaLR 375 492 -123 1788 120 89 17 chrX 28151491 28151782 -148822358 - AluSx SINE Alu 0 312 1 421 237 89 30 chrX 28152083 28152218 -148821922 - MLT1L LTR MaLR -375 240 98 381 285 56 32 chrX 28152687 28152855 -148821285 + MLT1H1 LTR MaLR 33 247 -302 531 205 54 3 chrX 28152935 28153114 -148821026 + MLT1H1 LTR MaLR 322 555 0 231 224 0 0 chrX 28153114 28153162 -148820978 + MER103 DNA DNA 45 92 -74 1181 243 8 46 chrX 28153790 28154009 -148820131 + LTR16A LTR ERVL 89 290 -160 1444 190 68 55 chrX 28154009 28154394 -148819746 - MLT1B LTR MaLR 0 390 1 1181 243 8 46 chrX 28154394 28154545 -148819595 + LTR16A LTR ERVL 290 445 -5 294 297 23 62 chrX 28155144 28155272 -148818868 - L2 LINE L2 -6 3307 3185 584 281 143 29 chrX 28155308 28155518 -148818622 + MIR SINE MIR 16 249 -13 329 239 0 46 chrX 28155715 28155824 -148818316 + MLT1H LTR MaLR 59 162 -387 1652 187 137 17 chrX 28155840 28155993 -148818147 + MLT1C LTR MaLR 1 134 -333 450 0 0 0 chrX 28155993 28156043 -148818097 + (CA)n Simple_repeat Simple_repeat 2 51 0 1652 187 137 17 chrX 28156043 28156306 -148817834 + MLT1C LTR MaLR 134 467 0 317 229 62 78 chrX 28157758 28158002 -148816138 - L1ME4a LINE L1 -1 6120 5881 190 348 11 22 chrX 28158531 28158620 -148815520 - L2 LINE L2 -334 2938 2851 1328 251 75 70 chrX 28159160 28160750 -148813390 + L1MC5 LINE L1 5522 7114 -847 808 223 41 38 chrX 28160790 28161081 -148813059 + L1MC5 LINE L1 7106 7397 -564 1221 251 21 6 chrX 28161084 28161406 -148812734 + MSTD LTR MaLR 1 327 -69 1193 194 97 19 chrX 28161406 28161726 -148812414 + MER2 DNA MER2_type 1 345 0 354 197 0 0 chrX 28161726 28161797 -148812343 + MSTD LTR MaLR 326 396 0 726 231 155 39 chrX 28161798 28162210 -148811930 + L1MC5 LINE L1 7398 7857 -104 811 227 19 34 chrX 28163676 28163710 -148810430 - MLT1E1 LTR MaLR -46 608 575 2181 153 19 6 chrX 28163710 28164069 -148810071 + MLT1A1 LTR MaLR 2 365 0 811 227 19 34 chrX 28164069 28164241 -148809899 - MLT1E1 LTR MaLR -79 575 405 400 188 136 3 chrX 28164296 28164458 -148809682 - MLT1E1 LTR MaLR -391 263 32 1601 216 27 2 chrX 28164473 28164876 -148809264 + L1M4 LINE L1 4448 4860 -1286 275 0 0 28 chrX 28164951 28164987 -148809153 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7170 57 7 19 chrX 28164987 28166605 -148807535 - SVA Other Other -756 1367 1 404 132 123 38 chrX 28166616 28166722 -148807418 - L1MCa LINE L1 -4504 1922 1808 1220 222 170 6 chrX 28166723 28167228 -148806912 - L1MDa LINE L1 -2952 3128 2541 820 239 0 11 chrX 28167233 28167421 -148806719 - MLT1A2 LTR MaLR 0 374 189 241 176 74 0 chrX 28167426 28167482 -148806658 - MLT1A2 LTR MaLR -322 52 1 2606 244 68 45 chrX 28167498 28168287 -148805853 - L1MDa LINE L1 -3563 2517 1748 2034 115 58 33 chrX 28168287 28168651 -148805489 - THE1C LTR MaLR 0 375 3 2606 244 68 45 chrX 28168651 28169787 -148804353 - L1MDa LINE L1 -4332 1748 548 264 100 0 0 chrX 28169805 28169845 -148804295 + (TC)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chrX 28169848 28169876 -148804264 + (TG)n Simple_repeat Simple_repeat 1 28 0 343 312 7 65 chrX 28169884 28170022 -148804118 - L1MDa LINE L1 -5557 513 384 371 285 57 44 chrX 28170119 28170277 -148803863 - L1MDa LINE L1 -5590 480 321 289 226 49 20 chrX 28170457 28170559 -148803581 - L1MDa LINE L1 -5902 168 64 1441 266 12 12 chrX 28171098 28171501 -148802639 + MLT1I LTR MaLR 7 409 0 945 242 40 8 chrX 28172187 28172439 -148801701 - MIR SINE MIR -1 261 2 784 272 10 0 chrX 28172467 28172662 -148801478 + MER58A DNA MER1_type 1 197 -27 419 63 0 101 chrX 28172948 28172964 -148801176 - L1MA2 LINE L1 0 6304 6288 2321 110 128 16 chrX 28172964 28173347 -148800793 + MSTA LTR MaLR 1 426 -2 419 63 0 101 chrX 28173347 28173409 -148800731 - L1MA2 LINE L1 -16 6288 6234 1162 153 10 5 chrX 28174284 28174486 -148799654 - L1PA13 LINE L1 -11 6152 5950 5320 137 19 14 chrX 28174861 28176238 -148797902 - L1PA13 LINE L1 -4 6159 4771 1458 88 0 9 chrX 28176268 28176484 -148797656 - L1MA4A LINE L1 0 6303 6090 243 146 0 0 chrX 28176484 28176525 -148797615 + (TA)n Simple_repeat Simple_repeat 2 42 0 1579 191 10 26 chrX 28176583 28176887 -148797253 + AluJo SINE Alu 1 299 -13 1290 260 54 38 chrX 28176992 28177419 -148796721 - MLT1C LTR MaLR 0 467 34 285 270 152 13 chrX 28177647 28178108 -148796032 + L1ME LINE L1 5107 5641 -529 226 342 44 0 chrX 28178133 28178291 -148795849 + L1ME LINE L1 5747 5911 -255 223 333 45 9 chrX 28178523 28178626 -148795514 + L3b LINE CR1 1265 1371 -212 325 368 51 0 chrX 28178626 28178743 -148795397 + MIR3 SINE MIR 3 125 -83 308 230 58 0 chrX 28178744 28178831 -148795309 - MER69 DNA AcHobo -2336 190 99 555 156 10 10 chrX 28179362 28179458 -148794682 + MER69 DNA AcHobo 547 642 -584 * 1694 185 52 29 chrX 28179456 28179860 -148794280 + MER69 DNA AcHobo 2038 2456 -70 1739 116 0 4 chrX 28179860 28180118 -148794022 - L1PA15 LINE L1 0 6165 5909 1694 185 52 29 chrX 28180118 28180189 -148793951 + MER69 DNA AcHobo 2456 2524 -2 289 259 36 45 chrX 28180429 28180541 -148793599 - MIR SINE MIR 0 262 152 1021 196 95 86 chrX 28180761 28181317 -148792823 + MLT2F LTR ERVL 1 663 0 1421 243 64 106 chrX 28181608 28182204 -148791936 + MLT1G1 LTR MaLR 1 571 -24 2301 251 54 0 chrX 28182239 28182601 -148791539 - MLT1F1 LTR MaLR 0 567 165 180 0 0 0 chrX 28182601 28182621 -148791519 + (GA)n Simple_repeat Simple_repeat 1 20 0 2301 251 54 0 chrX 28182621 28182796 -148791344 - MLT1F1 LTR MaLR -402 165 1 1275 165 29 0 chrX 28183551 28183793 -148790347 - L1MB5 LINE L1 0 6174 5926 607 130 43 65 chrX 28183793 28183931 -148790209 + L1MB5 LINE L1 5794 5928 -246 * 4215 228 115 32 chrX 28183930 28184896 -148789244 - L1M4 LINE L1 -2161 4483 3599 2018 142 7 0 chrX 28184896 28185191 -148788949 - AluSx SINE Alu -15 297 1 4215 228 115 32 chrX 28185191 28185901 -148788239 - L1M4 LINE L1 -3045 3599 2661 915 98 0 0 chrX 28185910 28186043 -148788097 - L1MA1 LINE L1 0 6302 6170 296 47 23 0 chrX 28186046 28186089 -148788051 - MER57B LTR ERV1 0 434 391 8169 144 23 41 chrX 28186089 28187729 -148786411 + L1PA8A LINE L1 3 1622 -4738 22591 111 8 19 chrX 28187733 28191318 -148782822 + L1PA8A LINE L1 2141 5683 -763 2296 109 0 0 chrX 28191318 28191621 -148782519 + AluSg SINE Alu 3 305 -5 22591 111 8 19 chrX 28191621 28192377 -148781763 + L1PA8A LINE L1 5683 6445 -1 348 43 0 0 chrX 28192386 28192432 -148781708 + (CA)n Simple_repeat Simple_repeat 1 46 0 2892 104 7 0 chrX 28192433 28192836 -148781304 - MER57B LTR ERV1 -26 408 3 5025 84 6 3 chrX 28192838 28193532 -148780608 - L1MA2 LINE L1 -132 6172 5477 4010 244 58 32 chrX 28193527 28195007 -148779133 - L1M4 LINE L1 -3967 2678 765 * 2094 126 134 11 chrX 28195007 28195388 -148778752 - MSTA LTR MaLR 0 428 1 4010 244 58 32 chrX 28195388 28196174 -148777966 - L1M4 LINE L1 -5880 765 1 526 299 107 34 chrX 28196199 28196433 -148777707 - MIR SINE MIR -8 254 4 828 279 21 13 chrX 28196842 28197083 -148777057 + MIR SINE MIR 15 260 -2 1839 159 35 0 chrX 28197784 28198098 -148776042 - L1MC1 LINE L1 0 6333 6009 182 176 274 0 chrX 28198274 28198325 -148775815 - MIR SINE MIR -62 146 82 295 352 50 60 chrX 28198363 28198644 -148775496 - L2 LINE L2 -2 3270 2993 2010 181 20 50 chrX 28199281 28199722 -148774418 - MSTB1 LTR MaLR -4 428 1 310 309 53 73 chrX 28199749 28199995 -148774145 + MLT1H LTR MaLR 84 324 -225 649 292 50 92 chrX 28200818 28201321 -148772819 + MLT1K LTR MaLR 99 580 -8 686 272 83 23 chrX 28201561 28201778 -148772362 + MIR SINE MIR 10 239 -23 312 274 90 9 chrX 28201998 28202120 -148772020 - MIR SINE MIR -70 138 19 188 268 0 0 chrX 28202126 28202167 -148771973 + L2 LINE L2 3148 3188 -84 267 31 0 0 chrX 28202196 28202228 -148771912 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 856 282 104 27 chrX 28202245 28202728 -148771412 - MLT1G LTR MaLR -2 593 19 264 310 52 39 chrX 28205487 28205642 -148768498 + L2 LINE L2 2244 2400 -914 3286 162 2 0 chrX 28205695 28206270 -148767870 - L1P LINE L1 -1662 4484 3909 3829 98 7 0 chrX 28206270 28206820 -148767320 + L1PA13 LINE L1 5609 6163 0 276 316 0 0 chrX 28206842 28206918 -148767222 + L2 LINE L2 2708 2783 -531 1122 94 0 20 chrX 28206936 28207085 -148767055 + AluSq/x SINE Alu 1 146 -167 407 59 8 4 chrX 28207122 28207194 -148766946 - MLT2A1 LTR ERVL 0 444 393 23 0 0 0 chrX 28207194 28207217 -148766923 + AT_rich Low_complexity Low_complexity 1 23 0 9872 154 36 0 chrX 28207217 28209840 -148764300 + L1PA12 LINE L1 3523 6168 0 349 250 78 26 chrX 28209899 28210015 -148764125 - MIR SINE MIR -16 246 125 1464 155 48 3 chrX 28210968 28211277 -148762863 + MER33 DNA MER1_type 1 323 -1 24 0 0 0 chrX 28212228 28212252 -148761888 + AT_rich Low_complexity Low_complexity 1 24 0 7520 224 65 21 chrX 28212296 28215244 -148758896 - L1ME1 LINE L1 -17 6149 3072 5518 91 0 44 chrX 28215258 28215625 -148758515 - L1PA8A LINE L1 -13 6118 5737 2541 58 0 6 chrX 28215625 28215938 -148758202 - AluY SINE Alu 0 311 1 5518 91 0 44 chrX 28215938 28216393 -148757747 - L1PA8A LINE L1 -394 5737 5332 14797 97 4 1 chrX 28216393 28219298 -148754842 - L1PA7 LINE L1 -1 6153 3240 22873 127 12 83 chrX 28219298 28223773 -148750367 - L1PA8A LINE L1 -1989 4157 1 635 123 35 0 chrX 28223788 28223902 -148750238 - L1P LINE L1 -803 5343 5226 3433 121 2 0 chrX 28223906 28224434 -148749706 + L1P LINE L1 4675 5203 -943 215 149 0 21 chrX 28224493 28224540 -148749600 + (TA)n Simple_repeat Simple_repeat 1 46 0 310 208 0 0 chrX 28224546 28224618 -148749522 - L1ME1 LINE L1 -3143 3003 2932 * 6963 239 54 32 chrX 28224615 28227242 -148746898 - L1MEc LINE L1 -1688 4527 1864 809 179 56 6 chrX 28227270 28227449 -148746691 - MER4A-int LTR ERV1 -5656 1102 915 4126 103 7 14 chrX 28227474 28228094 -148746046 - MER4A-int LTR ERV1 -5946 812 198 1118 242 94 11 chrX 28228108 28228459 -148745681 - MER4A-int LTR ERV1 -4107 2224 1845 2580 103 146 14 chrX 28228584 28229133 -148745007 - MER4A-int LTR ERV1 -5912 686 1 1722 110 6 88 chrX 28229136 28229455 -148744685 - MER4A LTR ERV1 0 664 372 591 96 43 11 chrX 28229483 28229577 -148744563 - MER4A LTR ERV1 -567 97 1 1286 213 89 3 chrX 28229843 28229921 -148744219 - MER2 DNA MER2_type 0 345 275 3584 167 22 48 chrX 28229921 28230663 -148743477 + MER72 LTR ERV1 1 722 0 1286 213 89 3 chrX 28230663 28230898 -148743242 - MER2 DNA MER2_type -70 275 5 296 270 61 26 chrX 28231433 28231548 -148742592 + MIR SINE MIR 14 132 -130 2400 153 35 31 chrX 28231550 28232032 -148742108 + MER110 LTR ERV1 1 484 -7 225 261 14 14 chrX 28232032 28232101 -148742039 + MIR3 SINE MIR 132 200 -8 669 98 27 0 chrX 28232282 28232394 -148741746 + L1MB3 LINE L1 6062 6176 -7 5553 174 21 28 chrX 28233630 28234677 -148739463 - MER45B DNA AcHobo 0 1040 1 483 293 48 7 chrX 28235341 28235488 -148738652 - MIR SINE MIR -87 175 23 560 229 114 44 chrX 28236549 28236916 -148737224 + LTR16C LTR ERVL 62 491 0 809 147 0 0 chrX 28237037 28237180 -148736960 - L1P LINE L1 -1080 5066 4924 6697 75 6 3 chrX 28237195 28238258 -148735882 + L1PA10 LINE L1 5104 6168 0 433 344 6 18 chrX 28241241 28241404 -148732736 - L2 LINE L2 -188 3084 2924 544 244 16 0 chrX 28241504 28241627 -148732513 - L2 LINE L2 0 3313 3189 328 313 0 55 chrX 28241632 28241760 -148732380 - L2 LINE L2 -508 2806 2686 289 277 36 0 chrX 28242556 28242639 -148731501 + MLT1I LTR MaLR 63 148 -261 435 198 11 0 chrX 28242753 28242844 -148731296 + MLT1I LTR MaLR 318 409 0 231 218 23 11 chrX 28243818 28243905 -148730235 + (TA)n Simple_repeat Simple_repeat 1 88 0 495 0 0 0 chrX 28244424 28244479 -148729661 + (TC)n Simple_repeat Simple_repeat 1 55 0 342 0 0 0 chrX 28244478 28244516 -148729624 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 319 354 29 34 chrX 28244625 28244834 -148729306 - MLT1K LTR MaLR -207 381 174 185 312 101 9 chrX 28245179 28245288 -148728852 + MIR SINE MIR 97 215 -47 853 99 19 62 chrX 28245465 28245627 -148728513 - THE1C LTR MaLR 0 375 221 348 367 79 0 chrX 28245661 28245890 -148728250 + L3 LINE CR1 338 584 -993 2629 46 15 3 chrX 28246098 28246427 -148727713 - L1PA7 LINE L1 0 6154 5822 986 164 56 23 chrX 28246441 28246655 -148727485 - THE1C LTR MaLR -154 221 1 10264 116 8 22 chrX 28246655 28248254 -148725886 - THE1C-int LTR MaLR 0 1580 4 1961 126 40 37 chrX 28248257 28248631 -148725509 - THE1C LTR MaLR 0 375 1 964 261 74 37 chrX 28249142 28249548 -148724592 - LTR16A LTR ERVL -13 437 17 1898 188 9 47 chrX 28249785 28249884 -148724256 - MER96B DNA MER1_type? 0 417 316 2183 154 32 14 chrX 28249884 28250318 -148723822 + L1MA4 LINE L1 5859 6300 0 1898 188 9 47 chrX 28250318 28250644 -148723496 - MER96B DNA MER1_type? -101 316 8 388 259 38 30 chrX 28250718 28250849 -148723291 + L2 LINE L2 2501 2632 -682 415 175 24 63 chrX 28250888 28251014 -148723126 - L1M4 LINE L1 -1048 5098 4978 481 305 85 26 chrX 28251188 28251780 -148722360 - L1ME LINE L1 -416 5754 5112 2190 96 20 0 chrX 28251780 28252073 -148722067 - AluSq SINE Alu -14 299 1 481 305 85 26 chrX 28252073 28252162 -148721978 - L1ME LINE L1 -1058 5112 5030 28 48 0 0 chrX 28252236 28252278 -148721862 + AT_rich Low_complexity Low_complexity 1 42 0 623 261 130 10 chrX 28252580 28252787 -148721353 + MIR SINE MIR 31 262 0 226 188 12 47 chrX 28253270 28253355 -148720785 + (TATAA)n Simple_repeat Simple_repeat 1 82 0 633 245 155 7 chrX 28253552 28253707 -148720433 + MER5A DNA MER1_type 6 183 -6 1162 158 0 5 chrX 28254295 28254479 -148719661 + MER5A DNA MER1_type 7 189 0 565 308 22 22 chrX 28254513 28254695 -148719445 + MIR3 SINE MIR 8 189 -19 244 323 0 42 chrX 28255228 28255324 -148718816 + L2 LINE L2 2873 2964 -349 1976 199 115 35 chrX 28256502 28257076 -148717064 + MLT1E3 LTR MaLR 5 624 0 394 299 118 68 chrX 28257611 28257624 -148716516 - L2 LINE L2 -688 2626 2615 1129 211 42 5 chrX 28257624 28257837 -148716303 - MER58A DNA MER1_type 0 224 4 394 299 118 68 chrX 28257837 28258061 -148716079 - L2 LINE L2 -699 2615 2404 267 31 0 0 chrX 28258061 28258093 -148716047 + (TG)n Simple_repeat Simple_repeat 2 33 0 394 299 118 68 chrX 28258093 28258204 -148715936 - L2 LINE L2 -910 2404 2300 183 42 0 0 chrX 28258204 28258228 -148715912 + (GA)n Simple_repeat Simple_repeat 1 24 0 394 299 118 68 chrX 28258228 28258318 -148715822 - L2 LINE L2 -1014 2300 2164 2095 266 11 21 chrX 28258914 28259134 -148715006 - MLT1H1 LTR MaLR 0 555 334 2034 177 0 5 chrX 28259134 28259501 -148714639 - MLT1A1 LTR MaLR 0 365 1 2095 266 11 21 chrX 28259501 28259841 -148714299 - MLT1H1 LTR MaLR -221 334 1 578 327 45 36 chrX 28259972 28260308 -148713832 - LTR16C LTR ERVL -10 481 143 1313 159 30 4 chrX 28260321 28260554 -148713586 - L1PA16 LINE L1 -16 6150 5912 388 246 148 113 chrX 28261760 28262346 -148711794 - MLT1L LTR MaLR -6 609 3 423 347 24 18 chrX 28262354 28262521 -148711619 + MIR3 SINE MIR 37 204 -4 242 292 0 0 chrX 28263014 28263079 -148711061 + L2 LINE L2 3208 3272 0 1377 275 71 43 chrX 28263278 28264242 -148709898 - L2 LINE L2 -5 3308 2315 331 77 19 0 chrX 28265355 28265407 -148708733 + MADE1 DNA Mariner 28 80 0 287 209 164 9 chrX 28265412 28265522 -148708618 - MER112 DNA MER1_type -83 177 51 451 363 60 12 chrX 28265550 28265798 -148708342 + MIR SINE MIR 2 261 -1 4084 220 30 16 chrX 28266354 28268306 -148705834 - L1MB7 LINE L1 0 6184 4201 4844 224 42 25 chrX 28268317 28269578 -148704562 + L1M4 LINE L1 13 1295 -5247 1033 120 0 6 chrX 28269578 28269736 -148704404 + Tigger1 DNA MER2_type 1 157 -2261 * 1276 115 29 5 chrX 28269728 28269936 -148704204 + Tigger1 DNA MER2_type 2205 2417 -1 1473 149 122 0 chrX 28269939 28270275 -148703865 + L1M4 LINE L1 1291 1667 -4979 6666 234 38 10 chrX 28270280 28271708 -148702432 - L1MB7 LINE L1 -1933 4213 2713 1728 180 127 29 chrX 28271708 28272124 -148702016 - MSTB2 LTR MaLR 0 457 1 6666 234 38 10 chrX 28272124 28272706 -148701434 - L1MB7 LINE L1 -3433 2713 2148 1890 221 15 17 chrX 28272703 28272909 -148701231 - L1MD2 LINE L1 -3 6356 6151 * 222 62 0 0 chrX 28272909 28272941 -148701199 + (TG)n Simple_repeat Simple_repeat 1 32 0 1890 221 15 17 chrX 28272941 28273213 -148700927 - L1MD2 LINE L1 -208 6151 5879 596 176 10 0 chrX 28273225 28273327 -148700813 - U6 snRNA snRNA -4 103 1 2606 241 55 54 chrX 28273328 28273748 -148700392 - L1M4c LINE L1 -4127 2698 2280 2353 81 3 0 chrX 28273748 28274046 -148700094 - AluSx SINE Alu -13 299 1 2606 241 55 54 chrX 28274046 28274944 -148699196 - L1M4c LINE L1 -4545 2280 1248 783 121 60 0 chrX 28274944 28275093 -148699047 - L1MA4 LINE L1 -6 6294 6137 2606 241 55 54 chrX 28275093 28275410 -148698730 - L1M4c LINE L1 -5577 1248 933 560 275 96 28 chrX 28275546 28275797 -148698343 - L1M4c LINE L1 -5667 875 608 335 388 61 0 chrX 28275919 28276066 -148698074 - L1M4c LINE L1 -6021 525 370 452 253 28 6 chrX 28276114 28276296 -148697844 - L1M4c LINE L1 -6341 201 16 240 278 111 0 chrX 28278320 28278410 -148695730 + MIR SINE MIR 53 152 -110 204 286 16 0 chrX 28278680 28278743 -148695397 + (CA)n Simple_repeat Simple_repeat 1 64 0 507 189 67 67 chrX 28279223 28279387 -148694753 + MER112 DNA MER1_type 2 165 -95 1039 261 91 39 chrX 28279419 28279631 -148694509 + MLT1J2 LTR MaLR 21 221 -229 1720 196 25 11 chrX 28279631 28279988 -148694152 + MLT1A1 LTR MaLR 4 365 0 1039 261 91 39 chrX 28279988 28280181 -148693959 + MLT1J2 LTR MaLR 221 447 -3 476 273 31 0 chrX 28280333 28280461 -148693679 + MER94 DNA DNA 1 132 -2 242 233 116 23 chrX 28280498 28280584 -148693556 + MER5C DNA MER1_type 227 320 -4 311 106 0 0 chrX 28281588 28281635 -148692505 + MER5B DNA MER1_type 130 176 -2 449 219 168 13 chrX 28281658 28281813 -148692327 - MER5A DNA MER1_type -2 187 9 1510 177 17 128 chrX 28282054 28282461 -148691679 - MLT1A1 LTR MaLR -1 364 3 1744 214 73 12 chrX 28282705 28283130 -148691010 - LTR37B LTR ERV1 0 468 18 21 36 0 0 chrX 28283394 28283422 -148690718 + AT_rich Low_complexity Low_complexity 1 28 0 343 197 45 0 chrX 28284554 28284620 -148689520 - U3 snRNA snRNA -145 72 4 225 135 0 0 chrX 28284617 28284654 -148689486 + Tigger7 DNA MER2_type 2 38 -512 * 256 143 95 16 chrX 28284630 28284693 -148689447 + Tigger7 DNA MER2_type 2520 2587 0 400 305 30 36 chrX 28284913 28285080 -148689060 + MIR3 SINE MIR 5 170 -38 1731 215 84 42 chrX 28285107 28285632 -148688508 + MLT1G LTR MaLR 27 573 -17 185 237 0 0 chrX 28287408 28287446 -148686694 - L2 LINE L2 -21 3292 3255 209 149 0 170 chrX 28288320 28288435 -148685705 + MIR SINE MIR 113 202 -60 195 42 0 0 chrX 28288640 28288664 -148685476 + (CATA)n Simple_repeat Simple_repeat 1 24 0 2446 82 3 0 chrX 28288686 28288991 -148685149 + AluSp SINE Alu 1 306 -7 1456 199 76 8 chrX 28289132 28289514 -148684626 - L1ME1 LINE L1 -4 6162 5755 1043 267 92 69 chrX 28289551 28289941 -148684199 + MER115 DNA AcHobo 2 400 -293 607 308 11 5 chrX 28290106 28290291 -148683849 - MIR3 SINE MIR -3 205 20 972 204 38 12 chrX 28290305 28290545 -148683595 - Charlie2 DNA MER1_type 0 2862 2617 19452 168 5 12 chrX 28290552 28295139 -148679001 - L1PA13 LINE L1 -19 6795 2239 6919 120 27 15 chrX 28295139 28296197 -148677943 - MER11C LTR ERVK 0 1071 1 8138 54 8 14 chrX 28296197 28297200 -148676940 - HERVK11 LTR ERVK 0 7953 6957 * 9550 49 8 1 chrX 28297185 28298367 -148675773 - HERVK11 LTR ERVK -1186 6767 5525 1912 47 0 4 chrX 28298365 28298599 -148675541 - HERVK11 LTR ERVK -3352 4601 4369 * 14287 150 20 6 chrX 28298599 28300782 -148673358 - L1PA13 LINE L1 -4573 2214 1 493 241 69 6 chrX 28300789 28300963 -148673177 - Charlie2 DNA MER1_type -230 2632 2448 211 219 0 0 chrX 28300990 28301031 -148673109 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 1040 242 76 70 chrX 28301066 28301748 -148672392 - L2 LINE L2 0 3313 2628 2253 165 23 29 chrX 28301752 28302147 -148671993 + MLT2B1 LTR ERVL 1 375 -39 309 109 0 0 chrX 28302147 28302193 -148671947 + (TG)n Simple_repeat Simple_repeat 2 47 0 2253 165 23 29 chrX 28302193 28302231 -148671909 + MLT2B1 LTR ERVL 375 412 -2 1574 251 58 36 chrX 28302267 28302734 -148671406 + LTR33 LTR ERVL 39 515 -6 1446 231 164 24 chrX 28302739 28303159 -148670981 - MLT1G1 LTR MaLR -8 587 109 570 189 98 33 chrX 28303206 28303293 -148670847 - L2 LINE L2 -685 2629 2549 2701 131 14 32 chrX 28303293 28303735 -148670405 - Tigger2a DNA MER2_type 0 434 1 570 189 98 33 chrX 28303735 28303800 -148670340 - L2 LINE L2 -765 2549 2467 1154 330 55 9 chrX 28303800 28304237 -148669903 - LTR16B LTR ERVL 0 464 8 862 275 5 0 chrX 28304244 28304455 -148669685 - L2 LINE L2 -843 2471 2260 1284 174 112 114 chrX 28304482 28304893 -148669247 - Charlie2 DNA MER1_type -462 2400 1989 1825 171 3 14 chrX 28304893 28305185 -148668955 - AluJb SINE Alu -23 289 1 1284 174 112 114 chrX 28305185 28305263 -148668877 - Charlie2 DNA MER1_type -873 1989 1912 670 260 108 28 chrX 28305307 28305557 -148668583 - Charlie2 DNA MER1_type -2474 308 39 224 289 95 16 chrX 28306150 28306284 -148667856 + MIR SINE MIR 20 165 -61 7225 50 2 0 chrX 28306779 28308075 -148666065 - L1PA7 LINE L1 0 6154 4862 881 65 0 0 chrX 28308075 28308182 -148665958 - U6 snRNA snRNA 0 107 1 302 311 33 50 chrX 28308194 28308374 -148665766 - L1ME LINE L1 -392 5729 5553 371 307 50 0 chrX 28308539 28308679 -148665461 + MIR SINE MIR 2 148 -114 403 241 57 51 chrX 28309484 28309516 -148664624 - MIR SINE MIR -27 235 205 2494 139 27 27 chrX 28309516 28309925 -148664215 + LTR57 LTR ERVL 3 411 0 403 241 57 51 chrX 28309925 28310050 -148664090 - MIR SINE MIR -57 205 77 201 154 0 51 chrX 28311118 28311157 -148662983 + L2 LINE L2 3243 3279 -34 356 237 180 71 chrX 28311193 28311476 -148662664 - MLT1J LTR MaLR -143 368 55 2362 167 58 16 chrX 28311489 28311937 -148662203 - MLT1C LTR MaLR 0 467 1 1384 253 90 43 chrX 28311959 28312468 -148661672 + MLT1H1 LTR MaLR 23 555 0 591 239 15 8 chrX 28313429 28313559 -148660581 + MIR SINE MIR 14 144 -118 1067 228 57 111 chrX 28313559 28313894 -148660246 + MLT1G LTR MaLR 1 312 -283 3428 196 8 39 chrX 28313906 28314573 -148659567 - MER82 DNA MER2_type -6 647 2 282 238 40 50 chrX 28314641 28314742 -148659398 + MLT1G LTR MaLR 367 466 -76 330 340 58 13 chrX 28315014 28315170 -148658970 - MIR3 SINE MIR -3 205 43 2786 119 16 23 chrX 28316841 28317276 -148656864 - MSTB1 LTR MaLR 0 432 1 432 0 0 0 chrX 28317582 28317630 -148656510 + (TG)n Simple_repeat Simple_repeat 1 48 0 461 186 20 10 chrX 28317710 28317812 -148656328 + MER5A DNA MER1_type 86 188 -1 1966 159 25 22 chrX 28318388 28318752 -148655388 + MLT1A1 LTR MaLR 1 365 0 1722 250 129 28 chrX 28319871 28320452 -148653688 - MLT2F LTR ERVL 0 663 24 408 287 67 13 chrX 28321268 28321418 -148652722 - MIR3 SINE MIR -2 206 49 1127 144 16 5 chrX 28323499 28323686 -148650454 + MER5A DNA MER1_type 1 189 0 188 258 65 0 chrX 28323771 28323833 -148650307 + L2 LINE L2 2912 2977 -336 2245 54 0 25 chrX 28323878 28324155 -148649985 + AluY SINE Alu 41 310 -1 201 293 0 43 chrX 28324159 28324275 -148649865 + L2 LINE L2 3127 3237 -76 1488 237 94 82 chrX 28324660 28325189 -148648951 - L2 LINE L2 -18 3295 2774 2338 96 3 0 chrX 28325189 28325482 -148648658 - AluSp SINE Alu -11 302 9 1488 237 94 82 chrX 28325482 28325628 -148648512 - L2 LINE L2 -539 2774 2631 226 226 0 48 chrX 28325628 28325690 -148648450 - L1M2b LINE L1 -6040 1169 1111 1488 237 94 82 chrX 28325690 28325946 -148648194 - L2 LINE L2 -682 2631 2285 182 171 24 0 chrX 28326626 28326667 -148647473 + (TA)n Simple_repeat Simple_repeat 2 43 0 2389 157 80 9 chrX 28326699 28327125 -148647015 + MLT1D LTR MaLR 48 503 -2 563 301 8 37 chrX 28327127 28327373 -148646767 - MIR SINE MIR -21 241 3 201 195 24 0 chrX 28327507 28327548 -148646592 + L2 LINE L2 3265 3306 -7 1995 119 34 91 chrX 28328414 28328800 -148645340 - THE1B LTR MaLR 0 364 1 755 298 70 32 chrX 28329161 28329634 -148644506 - LTR16C LTR ERVL 0 491 1 188 179 51 0 chrX 28330704 28330743 -148643397 - L2 LINE L2 0 3313 3273 226 286 155 0 chrX 28331361 28331445 -148642695 - MIR SINE MIR -164 98 2 5041 138 31 10 chrX 28331690 28332475 -148641665 - L1MA7 LINE L1 0 6291 5483 2329 94 0 0 chrX 28332475 28332772 -148641368 - AluSg SINE Alu -13 297 1 5041 138 31 10 chrX 28332772 28332900 -148641240 - L1MA7 LINE L1 -808 5483 5359 1610 134 123 0 chrX 28334752 28335013 -148639127 - AluSx SINE Alu -19 293 1 307 286 54 9 chrX 28335083 28335195 -148638945 - L1MC4 LINE L1 -2 8040 7924 888 138 26 20 chrX 28335784 28335936 -148638204 + L1PB4 LINE L1 5998 6150 -6 40733 34 23 1 chrX 28335960 28341980 -148632160 - L1PA3 LINE L1 0 6155 2 295 164 55 0 chrX 28343158 28343213 -148630927 + L2 LINE L2 3210 3267 -5 952 266 94 80 chrX 28343976 28344161 -148629979 + LTR16C LTR ERVL 37 218 -273 2563 55 3 3 chrX 28344161 28344472 -148629668 - AluY SINE Alu 0 311 1 952 266 94 80 chrX 28344472 28344710 -148629430 + LTR16C LTR ERVL 218 466 -25 297 0 0 0 chrX 28344752 28344785 -148629355 + (CA)n Simple_repeat Simple_repeat 2 34 0 543 252 8 0 chrX 28344785 28344904 -148629236 + Tigger3(Golem) DNA MER2_type 3 122 -2907 * 3909 124 57 19 chrX 28344881 28345605 -148628535 + Tigger3(Golem) DNA MER2_type 2277 3027 -2 403 255 19 19 chrX 28346370 28346476 -148627664 - MIR3 SINE MIR -25 183 78 1146 188 40 29 chrX 28346844 28347116 -148627024 - ORSL DNA AcHobo 0 275 1 1924 158 7 77 chrX 28347150 28347567 -148626573 - MLT1B LTR MaLR -2 388 1 275 344 58 13 chrX 28349020 28349174 -148624966 - MER5A DNA MER1_type -28 161 1 509 72 0 0 chrX 28349853 28349922 -148624218 - Alu SINE Alu -7 305 237 221 261 0 46 chrX 28350170 28350235 -148623905 - L2 LINE L2 -18 3254 3193 359 292 10 109 chrX 28350369 28350571 -148623569 - L3b LINE CR1 -256 1327 1146 554 267 55 9 chrX 28350679 28350879 -148623261 + MIR SINE MIR 4 210 -52 307 312 54 6 chrX 28351236 28351386 -148622754 + MER5A DNA MER1_type 2 162 -16 559 248 106 0 chrX 28351407 28351568 -148622572 - MER5A DNA MER1_type -11 178 1 2004 127 6 32 chrX 28352109 28352455 -148621685 - L1MC1 LINE L1 0 6333 5997 1457 243 86 41 chrX 28353734 28354220 -148619920 - MLT1J LTR MaLR -3 508 1 1217 188 104 33 chrX 28354429 28354822 -148619318 + LTR37A LTR ERV1 6 426 0 525 274 102 28 chrX 28354970 28355185 -148618955 - MIR SINE MIR 0 262 32 311 203 72 0 chrX 28355450 28355519 -148618621 + MIR SINE MIR 17 90 -118 228 147 40 53 chrX 28355545 28355602 -148618538 - MIR SINE MIR -63 145 96 231 308 177 15 chrX 28355705 28355835 -148618305 + MIR3 SINE MIR 37 187 -21 10912 158 14 14 chrX 28355851 28356276 -148617864 - L1MA4A LINE L1 -27 6276 5852 288 0 0 0 chrX 28356276 28356308 -148617832 + (TA)n Simple_repeat Simple_repeat 2 33 0 10912 158 14 14 chrX 28356308 28358917 -148615223 - L1MA4A LINE L1 -451 5852 3182 467 86 49 0 chrX 28358917 28358998 -148615142 + MER4B-int LTR ERV1 1101 1185 -5573 4225 74 47 11 chrX 28359011 28359717 -148614423 + MER4B-int LTR ERV1 1764 2494 -4104 1236 168 71 0 chrX 28359717 28359955 -148614185 - LTR8 LTR ERV1 -433 258 4 3595 119 101 53 chrX 28359958 28360858 -148613282 + MER4-int LTR ERV1 2737 3679 -2919 3504 103 56 22 chrX 28360862 28361465 -148612675 + MER4-int LTR ERV1 3840 4463 -2135 350 152 0 15 chrX 28361465 28361531 -148612609 - AluS SINE Alu -10 290 226 200 108 0 54 chrX 28362032 28362069 -148612071 + L2 LINE L2 3278 3312 -1 1598 177 107 0 chrX 28362450 28362777 -148611363 + L1MB5 LINE L1 5679 6040 -134 312 27 0 0 chrX 28362992 28363029 -148611111 + (CTA)n Simple_repeat Simple_repeat 2 38 0 3482 124 30 82 chrX 28363029 28363757 -148610383 - LTR8 LTR ERV1 -1 690 1 388 222 33 11 chrX 28363986 28364076 -148610064 + MIR3 SINE MIR 76 167 -41 980 280 25 6 chrX 28364234 28364548 -148609592 - MER102b DNA MER1_type -21 320 1 1943 348 53 28 chrX 28364674 28366250 -148607890 - L2 LINE L2 0 3313 1699 231 356 138 31 chrX 28366504 28366889 -148607251 + L2 LINE L2 2552 2977 -337 291 250 78 62 chrX 28367121 28367249 -148606891 + L2 LINE L2 3143 3272 0 2300 110 0 3 chrX 28367354 28367664 -148606476 + AluSx SINE Alu 1 309 -3 2809 189 73 22 chrX 28368103 28368785 -148605355 + L1ME3 LINE L1 5445 6161 -1 2277 92 10 0 chrX 28368903 28369207 -148604933 - AluY SINE Alu -4 307 1 306 146 0 0 chrX 28369833 28369881 -148604259 - HAL1 LINE L1 -17 2490 2443 942 198 107 4 chrX 28369936 28370178 -148603962 + LTR16C LTR ERVL 224 490 -1 445 297 23 36 chrX 28371090 28371309 -148602831 - MLT1J LTR MaLR -8 503 288 566 227 87 12 chrX 28371361 28371533 -148602607 - MLT1J LTR MaLR -317 194 10 285 75 0 0 chrX 28371826 28371866 -148602274 + (CA)n Simple_repeat Simple_repeat 1 40 0 536 318 80 49 chrX 28371893 28372258 -148601882 - L2 LINE L2 -67 3246 2871 2345 105 0 0 chrX 28372376 28372671 -148601469 - AluSg SINE Alu -15 295 1 310 217 0 0 chrX 28372971 28373040 -148601100 + MLT1H1 LTR MaLR 1 69 -486 1174 225 0 4 chrX 28373043 28373287 -148600853 + MLT1H1 LTR MaLR 304 546 -9 6965 177 27 29 chrX 28373479 28373677 -148600463 + MST-int LTR MaLR 1 198 -1453 2198 144 0 0 chrX 28373677 28373989 -148600151 + AluSx SINE Alu 1 312 0 6965 177 27 29 chrX 28373989 28375160 -148598980 + MST-int LTR MaLR 198 1368 -283 1287 190 4 8 chrX 28375160 28375397 -148598743 + MSTB LTR MaLR 191 426 0 744 172 0 23 chrX 28376060 28376188 -148597952 - FLAM_C SINE Alu -8 125 1 279 289 78 56 chrX 28376193 28376340 -148597800 + MIR SINE MIR 59 210 -52 277 333 0 0 chrX 28376455 28376527 -148597613 - MIR3 SINE MIR -40 168 97 482 328 116 18 chrX 28376699 28377028 -148597112 + L2 LINE L2 2487 2847 -467 392 294 102 32 chrX 28377295 28377482 -148596658 + L2 LINE L2 3109 3308 -5 481 298 120 31 chrX 28377933 28378158 -148595982 - MIR SINE MIR -8 254 10 1894 151 21 18 chrX 28378206 28378544 -148595596 + MER44D DNA MER2_type 1 609 0 272 264 128 80 chrX 28378724 28378849 -148595291 + L2 LINE L2 3142 3272 0 1314 185 50 7 chrX 28379592 28379894 -148594246 + LTR16C LTR ERVL 168 482 -9 1791 190 14 19 chrX 28379896 28380260 -148593880 - MLT1A1 LTR MaLR 0 365 4 304 275 81 47 chrX 28382587 28382736 -148591404 + MIR SINE MIR 96 249 -13 3567 90 2 0 chrX 28382807 28383298 -148590842 - L1PA13 LINE L1 -4 6159 5668 26 50 0 0 chrX 28383321 28383361 -148590779 + AT_rich Low_complexity Low_complexity 1 40 0 5432 129 14 4 chrX 28383367 28384685 -148589455 - L1PA13 LINE L1 -489 5679 4347 387 97 125 0 chrX 28384893 28384965 -148589175 - MER53 DNA DNA -108 81 1 501 286 65 69 chrX 28385311 28385797 -148588343 - LTR67 LTR ERVL -3 554 6 240 35 0 0 chrX 28386390 28386419 -148587721 + (CA)n Simple_repeat Simple_repeat 2 30 0 323 190 13 0 chrX 28386695 28386774 -148587366 - MER33 DNA MER1_type -3 360 281 2810 227 26 5 chrX 28386779 28387560 -148586580 + L1MC1 LINE L1 4536 5332 -814 10251 224 13 42 chrX 28387560 28390170 -148583970 + L1PA16 LINE L1 1881 4436 -1710 309 0 0 0 chrX 28390170 28390214 -148583926 + AluY SINE Alu 258 301 0 10251 224 13 42 chrX 28390214 28390603 -148583537 + L1PA16 LINE L1 4436 4835 -1311 5868 115 6 7 chrX 28390610 28391642 -148582498 + L1PA16 LINE L1 5144 6157 -9 5940 137 13 14 chrX 28392071 28392914 -148581226 + L1MC1 LINE L1 5302 6148 -185 2667 116 81 0 chrX 28392914 28393310 -148580830 + MSTA LTR MaLR 1 428 0 5940 137 13 14 chrX 28393310 28393494 -148580646 + L1MC1 LINE L1 6148 6331 -2 1121 197 32 0 chrX 28393498 28393747 -148580393 - MER33 DNA MER1_type -67 257 1 268 320 50 0 chrX 28393807 28393907 -148580233 - MER5C DNA MER1_type -218 106 2 21 36 0 0 chrX 28394214 28394242 -148579898 + AT_rich Low_complexity Low_complexity 1 28 0 1366 154 136 84 chrX 28394889 28395061 -148579079 + MLT1B LTR MaLR 1 163 -227 2367 72 3 0 chrX 28395061 28395354 -148578786 + AluY SINE Alu 1 294 -17 1366 154 136 84 chrX 28395354 28395550 -148578590 + MLT1B LTR MaLR 163 388 -2 201 333 0 0 chrX 28396148 28396175 -148577965 - MIR3 SINE MIR -6 202 176 2196 154 70 7 chrX 28396175 28396578 -148577562 + MSTA LTR MaLR 1 428 0 201 333 0 0 chrX 28396578 28396616 -148577524 - MIR3 SINE MIR -31 177 137 411 347 21 34 chrX 28396740 28396979 -148577161 - MIR SINE MIR -6 256 21 785 297 42 25 chrX 28397090 28397444 -148576696 + LTR16A LTR ERVL 25 384 -66 431 301 48 14 chrX 28398353 28398569 -148575571 + L1ME LINE L1 5552 5729 -392 235 203 31 0 chrX 28398575 28398639 -148575501 + L1ME LINE L1 5817 5882 -239 2294 84 7 3 chrX 28398813 28399111 -148575029 - AluY SINE Alu -12 299 1 1867 157 32 35 chrX 28399922 28400323 -148573817 + L1MA4 LINE L1 5898 6297 -3 402 167 2 0 chrX 28400459 28400532 -148573608 + MLT1H LTR MaLR 17 133 -416 488 226 188 6 chrX 28400538 28400719 -148573421 + MLT1H1 LTR MaLR 335 548 -7 284 174 0 29 chrX 28400744 28400813 -148573327 + GA-rich Low_complexity Low_complexity 2 68 0 329 373 102 13 chrX 28400851 28401165 -148572975 - L2 LINE L2 -337 2977 2636 468 216 36 58 chrX 28401267 28401406 -148572734 - MLT1G LTR MaLR -44 546 411 463 272 79 22 chrX 28401625 28401853 -148572287 - MLT1G1 LTR MaLR -238 352 112 569 206 14 21 chrX 28401896 28402037 -148572103 + MLT1H LTR MaLR 151 290 -259 549 218 32 0 chrX 28402089 28402232 -148571908 - MLT1G1 LTR MaLR -442 144 7 1441 142 161 0 chrX 28402378 28402632 -148571508 + AluJo SINE Alu 1 295 -17 1947 149 3 3 chrX 28402781 28403077 -148571063 + AluJb SINE Alu 1 296 -16 422 254 145 7 chrX 28403285 28403423 -148570717 - MIR SINE MIR -1 261 105 221 263 38 38 chrX 28403513 28403593 -148570547 - MIR SINE MIR -171 91 12 353 283 21 35 chrX 28403726 28403871 -148570269 - L2 LINE L2 -850 2464 2322 518 248 8 8 chrX 28403990 28404107 -148570033 - MIR3 SINE MIR -5 203 87 709 268 79 48 chrX 28405547 28405887 -148568253 + MLT1J2 LTR MaLR 53 403 -47 813 162 71 30 chrX 28405887 28406084 -148568056 - LTR52 LTR ERVL -3 418 214 4536 219 49 20 chrX 28406090 28407162 -148566978 - LTR52-int LTR ERVL -202 3354 2251 2493 199 35 0 chrX 28407293 28407801 -148566339 - LTR52-int LTR ERVL -3589 2096 1571 563 226 26 89 chrX 28408885 28409068 -148565072 + MIR SINE MIR 11 182 -55 997 133 6 24 chrX 28409884 28410050 -148564090 + AluSg/x SINE Alu 124 286 -26 1456 210 35 46 chrX 28410140 28410534 -148563606 + MLT1B LTR MaLR 1 395 -1 2059 125 46 55 chrX 28410587 28410954 -148563186 - THE1B LTR MaLR 0 364 1 22 0 0 0 chrX 28411594 28411616 -148562524 + AT_rich Low_complexity Low_complexity 1 22 0 752 156 9 120 chrX 28411639 28411864 -148562276 + MER58C DNA MER1_type 9 208 -7 3236 107 0 0 chrX 28412250 28412717 -148561423 + L1PA14 LINE L1 5695 6161 0 435 324 66 90 chrX 28413069 28413693 -148560447 + L1MC4a LINE L1 5305 5913 -1895 2223 120 0 19 chrX 28413718 28414034 -148560106 + AluSx SINE Alu 1 310 -2 2408 69 0 7 chrX 28414523 28414829 -148559311 - AluY SINE Alu -7 304 1 2560 48 7 0 chrX 28415033 28415342 -148558798 + AluY SINE Alu 1 311 0 1687 237 24 19 chrX 28416234 28416699 -148557441 + MLT1C LTR MaLR 1 467 0 4939 258 58 23 chrX 28418507 28420624 -148553516 + L1M4b LINE L1 2 2415 -4544 315 331 48 36 chrX 28420781 28421085 -148553055 + L1M4b LINE L1 2410 2719 -4240 1878 234 36 19 chrX 28421097 28421818 -148552322 + L1M4b LINE L1 2775 3506 -3451 * 3501 123 7 26 chrX 28421815 28422606 -148551534 + L1PA12 LINE L1 5271 6019 -149 2146 143 3 11 chrX 28422374 28422745 -148551395 + L1PB1 LINE L1 5783 6150 -1 * 183 80 0 0 chrX 28422817 28422842 -148551298 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 745 243 27 57 chrX 28422908 28423171 -148550969 - LTR16A1 LTR ERVL -3 454 200 316 271 0 0 chrX 28423374 28423444 -148550696 - L2 LINE L2 0 3272 3203 478 273 44 66 chrX 28423546 28423729 -148550411 + MIR SINE MIR 69 247 -15 239 182 0 0 chrX 28424032 28424076 -148550064 + LTR67 LTR ERVL 129 172 -385 243 270 153 9 chrX 28424217 28424328 -148549812 + MIR SINE MIR 126 252 -10 228 86 0 0 chrX 28425488 28425523 -148548617 + (CACAT)n Simple_repeat Simple_repeat 1 35 0 187 327 96 65 chrX 28425686 28425885 -148548255 - L2 LINE L2 -375 2939 2735 2244 109 0 3 chrX 28425913 28426215 -148547925 + AluSx SINE Alu 1 301 -11 188 288 68 0 chrX 28426369 28426428 -148547712 + L2 LINE L2 3210 3272 0 239 215 47 103 chrX 28427888 28427995 -148546145 + MLT1J LTR MaLR 84 184 -327 2390 152 23 23 chrX 28428019 28428448 -148545692 + MSTB1 LTR MaLR 1 429 -3 2530 65 0 3 chrX 28429264 28429571 -148544569 + AluY SINE Alu 4 309 -2 356 178 14 14 chrX 28430343 28430416 -148543724 + MER21B LTR ERV1 667 739 -124 874 134 0 0 chrX 28430487 28430614 -148543526 + FLAM_C SINE Alu 1 127 -16 2034 203 88 103 chrX 28430641 28431390 -148542750 + MER21B LTR ERV1 2 739 -124 1678 161 15 7 chrX 28431461 28431735 -148542405 + AluSx SINE Alu 1 276 -36 459 248 85 0 chrX 28431904 28432033 -148542107 - MLT1J2 LTR MaLR -310 140 1 289 271 75 53 chrX 28432193 28432326 -148541814 - L2 LINE L2 -1 3271 3136 2203 86 31 0 chrX 28433275 28433566 -148540574 + AluSg SINE Alu 1 300 -10 24 0 0 0 chrX 28434416 28434440 -148539700 + AT_rich Low_complexity Low_complexity 1 24 0 302 190 32 11 chrX 28434704 28434799 -148539341 + L1ME1 LINE L1 5860 5959 -207 618 290 42 28 chrX 28434825 28435282 -148538858 - L1ME3A LINE L1 -274 5896 5437 * 1043 224 107 13 chrX 28435281 28435580 -148538560 + L1ME2 LINE L1 5828 6154 -10 2171 96 0 17 chrX 28435617 28435919 -148538221 - AluSc SINE Alu -12 297 1 925 276 66 19 chrX 28435934 28435983 -148538157 - L1ME3A LINE L1 -728 5442 5397 1353 202 99 72 chrX 28435983 28436428 -148537712 + LTR16A1 LTR ERVL 1 457 0 925 276 66 19 chrX 28436428 28436987 -148537153 - L1ME3A LINE L1 -773 5397 4805 555 245 148 14 chrX 28436967 28437183 -148536957 - L1ME3A LINE L1 -2314 3832 3588 * 680 280 135 5 chrX 28437784 28437991 -148536149 + MLT1I LTR MaLR 114 347 -62 339 314 62 21 chrX 28438300 28438494 -148535646 + L2 LINE L2 3112 3313 0 410 302 125 16 chrX 28439509 28439701 -148534439 - L2 LINE L2 -593 2721 2509 5806 110 11 38 chrX 28440234 28441060 -148533080 - L1PA16 LINE L1 -4 6162 5360 6882 29 0 1 chrX 28441060 28441867 -148532273 + L1PA5 LINE L1 5344 6149 -5 5806 110 11 38 chrX 28441867 28442048 -148532092 - L1PA16 LINE L1 -806 5360 5176 203 0 0 36 chrX 28442048 28442076 -148532064 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 42552 38 21 1 chrX 28442076 28448093 -148526047 - L1PA3 LINE L1 -13 6142 1 4715 195 4 3 chrX 28448099 28449052 -148525088 - L1PA16 LINE L1 -961 5185 4232 180 200 0 50 chrX 28449052 28449092 -148525048 + L2 LINE L2 3022 3059 -254 2092 117 0 17 chrX 28449146 28449446 -148524694 - AluSc SINE Alu -14 295 1 237 65 0 0 chrX 28449446 28449477 -148524663 + (T)n Simple_repeat Simple_repeat 1 31 0 32 0 0 0 chrX 28449513 28449545 -148524595 + AT_rich Low_complexity Low_complexity 1 32 0 2893 128 47 2 chrX 28449740 28450234 -148523906 + L1MA9 LINE L1 5797 6312 0 1586 166 8 8 chrX 28450576 28450835 -148523305 + AluJo SINE Alu 1 259 -53 597 261 116 5 chrX 28451973 28452180 -148521960 + LTR16C LTR ERVL 262 491 0 296 180 33 131 chrX 28452308 28452368 -148521772 - MER103 DNA DNA -47 119 75 2202 120 0 3 chrX 28452368 28452668 -148521472 + AluSp SINE Alu 2 300 -13 296 180 33 131 chrX 28452668 28452729 -148521411 - MER103 DNA DNA -91 75 10 356 316 39 64 chrX 28453721 28454003 -148520137 + L1MC/D LINE L1 736 1010 -6112 248 233 41 0 chrX 28454563 28454657 -148519483 + L1MC/D LINE L1 1367 1468 -4955 21 57 0 0 chrX 28454718 28454753 -148519387 + AT_rich Low_complexity Low_complexity 1 35 0 606 293 153 20 chrX 28454768 28455468 -148518672 + L1MC/D LINE L1 1721 2513 -4428 1838 156 40 0 chrX 28455588 28455864 -148518276 + AluJo SINE Alu 3 289 -23 4099 188 59 11 chrX 28455976 28456845 -148517295 - L1MB8 LINE L1 0 6989 6080 1221 178 99 8 chrX 28456845 28457087 -148517053 + Tigger7 DNA MER2_type 1 264 -469 605 176 0 0 chrX 28457092 28457183 -148516957 + Tigger7 DNA MER2_type 2390 2480 -7 1225 215 155 3 chrX 28457191 28457558 -148516582 - L1MB8 LINE L1 -874 6083 5661 3620 227 25 7 chrX 28457572 28458584 -148515556 - L1MB8 LINE L1 -2965 3992 2963 4854 234 127 17 chrX 28458589 28460134 -148514006 - L1MB8 LINE L1 -5028 1827 121 318 233 128 11 chrX 28460213 28460393 -148513747 + L1MC/D LINE L1 2819 3019 -4103 315 217 19 9 chrX 28460405 28460465 -148513675 - L1M LINE L1 -816 5362 5303 6332 137 19 4 chrX 28460465 28461877 -148512263 - L1MA4 LINE L1 -1 6299 4866 5534 137 17 2 chrX 28461906 28462805 -148511335 + L1MA5 LINE L1 5387 6298 -2 2669 255 74 17 chrX 28462830 28463954 -148510186 + L1MC/D LINE L1 3010 4159 -2782 327 257 127 87 chrX 28463952 28464205 -148509935 + L1MC/D LINE L1 6358 6620 -1983 * 5763 138 34 14 chrX 28464291 28465451 -148508689 - L1MA8 LINE L1 -4 6287 5106 207 0 0 0 chrX 28465451 28465474 -148508666 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2345 75 0 0 chrX 28465476 28465756 -148508384 - AluSg SINE Alu -30 280 1 4543 123 25 0 chrX 28465756 28466487 -148507653 - L1MA8 LINE L1 -1430 4716 3968 378 0 0 0 chrX 28466518 28466560 -148507580 + (TG)n Simple_repeat Simple_repeat 1 42 0 555 50 0 12 chrX 28466675 28466755 -148507385 + L1MA1 LINE L1 6222 6300 -2 27 0 0 0 chrX 28466756 28466783 -148507357 + AT_rich Low_complexity Low_complexity 1 27 0 448 189 44 0 chrX 28467877 28467967 -148506173 + L2 LINE L2 2434 2527 -787 3244 209 24 16 chrX 28467967 28468672 -148505468 + L1ME1 LINE L1 5389 6099 -67 1081 286 117 3 chrX 28468672 28468800 -148505340 + L2 LINE L2 2574 2686 -627 180 0 0 0 chrX 28468800 28468820 -148505320 + (CATAT)n Simple_repeat Simple_repeat 5 24 0 1081 286 117 3 chrX 28468820 28469078 -148505062 + L2 LINE L2 2686 3005 -308 243 378 30 7 chrX 28469064 28469199 -148504941 + L2 LINE L2 2722 2859 -455 * 308 238 4 0 chrX 28469358 28469425 -148504715 + MER5A DNA MER1_type 110 189 0 296 229 0 0 chrX 28469498 28469559 -148504581 + L2 LINE L2 3203 3263 -9 1561 250 65 26 chrX 28471076 28471568 -148502572 + MLT1J LTR MaLR 1 511 0 1782 248 82 90 chrX 28472007 28472198 -148501942 + L1MC4 LINE L1 6971 7162 -880 2164 161 77 17 chrX 28472198 28472601 -148501539 + MSTA LTR MaLR 1 427 -1 1782 248 82 90 chrX 28472601 28472709 -148501431 + L1MC4 LINE L1 7162 7269 -773 1327 59 0 0 chrX 28472709 28472878 -148501262 - L1PA8 LINE L1 -3 6169 6001 1782 248 82 90 chrX 28472878 28473625 -148500515 + L1MC4 LINE L1 7269 8010 -32 1560 346 44 20 chrX 28474611 28475354 -148498786 + L2 LINE L2 2151 2911 -403 514 273 0 9 chrX 28475404 28475514 -148498626 + L2 LINE L2 3121 3229 -43 25 31 0 0 chrX 28475621 28475653 -148498487 + AT_rich Low_complexity Low_complexity 1 32 0 301 265 39 34 chrX 28475812 28476054 -148498086 - L1MEc LINE L1 -3756 2402 2141 609 319 115 35 chrX 28476428 28476908 -148497232 - HAL1b LINE L1 -740 608 91 4653 88 0 3 chrX 28477175 28477812 -148496328 - L1PA13 LINE L1 0 6163 5529 768 296 47 19 chrX 28478835 28479152 -148494988 + MARNA DNA Mariner 248 573 -13 2373 213 104 26 chrX 28479298 28479922 -148494218 + LTR50 LTR ERVL 1 673 -122 2241 161 77 23 chrX 28479928 28480369 -148493771 + MLT1C LTR MaLR 3 467 0 241 89 67 0 chrX 28480393 28480438 -148493702 + LTR50 LTR ERVL 712 759 -36 714 129 0 2 chrX 28480438 28480672 -148493468 + AluSx SINE Alu 1 283 -27 292 109 65 0 chrX 28480679 28480725 -148493415 + LTR50 LTR ERVL 746 794 -1 * 372 156 0 16 chrX 28480725 28480786 -148493354 - LTR16C LTR ERVL -8 483 424 595 113 72 0 chrX 28480786 28480883 -148493257 - L1PBa LINE L1 -6157 706 603 2919 179 30 9 chrX 28480886 28481445 -148492695 - L1PBa LINE L1 -6292 571 1 1247 254 121 0 chrX 28481488 28481803 -148492337 - LTR16C LTR ERVL -54 437 85 350 200 92 85 chrX 28481810 28481940 -148492200 + LTR50 LTR ERVL 360 490 -305 2382 83 0 7 chrX 28482128 28482428 -148491712 + AluSg SINE Alu 1 298 -12 2079 201 67 62 chrX 28484454 28484490 -148489650 - MLT1G LTR MaLR 0 590 556 2259 188 140 19 chrX 28484490 28484914 -148489226 + MLT2B1 LTR ERVL 1 487 -33 195 42 0 0 chrX 28484914 28484938 -148489202 + (CA)n Simple_repeat Simple_repeat 1 24 0 2259 188 140 19 chrX 28484938 28484977 -148489163 + MLT2B1 LTR ERVL 487 520 0 2079 201 67 62 chrX 28484977 28485565 -148488575 - MLT1G LTR MaLR -34 556 1 2012 206 73 55 chrX 28485699 28486258 -148487882 - MLT1E2 LTR MaLR -57 569 1 4730 164 55 19 chrX 28486298 28487202 -148486938 - L1MB4 LINE L1 -1 6179 5211 1531 230 18 44 chrX 28487202 28487268 -148486872 - MLT1A2 LTR MaLR -1 373 307 1848 146 28 7 chrX 28487268 28487556 -148486584 + AluJb SINE Alu 1 294 -18 1531 230 18 44 chrX 28487556 28487872 -148486268 - MLT1A2 LTR MaLR -67 307 1 4730 164 55 19 chrX 28487872 28488253 -148485887 - L1MB4 LINE L1 -969 5211 4845 306 234 16 0 chrX 28488672 28488736 -148485404 - L2 LINE L2 0 3313 3249 268 267 80 0 chrX 28489054 28489129 -148485011 - L2 LINE L2 -40 3273 3193 443 301 23 8 chrX 28489159 28489292 -148484848 - MIR3 SINE MIR -71 137 3 2547 37 7 0 chrX 28489526 28489824 -148484316 + AluY SINE Alu 1 300 -11 229 381 51 8 chrX 28489961 28490079 -148484061 + MIR3 SINE MIR 37 159 -49 2226 113 0 0 chrX 28490092 28490393 -148483747 + AluSx SINE Alu 1 301 -11 598 277 20 29 chrX 28490825 28491005 -148483135 - MIR SINE MIR -11 251 74 250 301 94 62 chrX 28491089 28491345 -148482795 + MLT1H LTR MaLR 144 407 -142 240 298 35 0 chrX 28492096 28492153 -148481987 - L2 LINE L2 -1 3271 3213 202 188 0 94 chrX 28492573 28492637 -148481503 + MIR SINE MIR 84 141 -67 234 311 115 22 chrX 28492639 28492825 -148481315 + L1P3 LINE L1 5724 5925 -243 490 270 103 25 chrX 28492834 28493038 -148481102 - MIR SINE MIR -11 251 32 1378 207 78 81 chrX 28493142 28493664 -148480476 - MER113 DNA MER1_type? 0 521 1 198 256 0 0 chrX 28493877 28493920 -148480220 - MIR SINE MIR -1 261 219 742 170 254 0 chrX 28494017 28494182 -148479958 - MIR SINE MIR -54 208 2 359 297 34 5 chrX 28495956 28496160 -148477980 + LTR16A LTR ERVL 1 204 -260 1888 216 75 24 chrX 28496162 28496670 -148477470 - L2 LINE L2 -496 2818 2285 397 319 64 38 chrX 28496795 28497061 -148477079 + L2 LINE L2 2357 2629 -685 2595 87 22 33 chrX 28497381 28497749 -148476391 + THE1B LTR MaLR 1 364 0 548 317 103 24 chrX 28497871 28498212 -148475928 + L2 LINE L2 2946 3313 0 313 214 13 138 chrX 28498931 28499090 -148475050 - MIR SINE MIR -62 200 62 29 70 0 0 chrX 28500758 28500815 -148473325 + AT_rich Low_complexity Low_complexity 1 57 0 1977 194 138 79 chrX 28501625 28502243 -148471897 - MLT1E1 LTR MaLR 0 654 1 412 382 44 0 chrX 28502353 28502581 -148471559 - MIR SINE MIR -6 256 19 2190 101 0 36 chrX 28502831 28503139 -148471001 - AluSp SINE Alu -16 297 1 272 139 0 0 chrX 28503207 28503250 -148470890 + MLT1E3 LTR MaLR 582 624 0 947 261 33 45 chrX 28503369 28503459 -148470681 + L1MC4a LINE L1 5648 5738 -2070 2212 123 0 7 chrX 28503459 28503767 -148470373 + AluSx SINE Alu 1 306 -6 947 261 33 45 chrX 28503767 28504009 -148470131 + L1MC4a LINE L1 5738 5976 -1832 276 30 0 0 chrX 28504059 28504092 -148470048 + (CA)n Simple_repeat Simple_repeat 2 34 0 1232 299 48 8 chrX 28506319 28506693 -148467447 - LTR16C LTR ERVL -1 490 102 1130 289 25 33 chrX 28507049 28507533 -148466607 + L1MC4a LINE L1 5506 5985 -1823 1012 309 91 9 chrX 28507784 28508134 -148466006 + LTR16C LTR ERVL 89 467 -24 281 327 0 42 chrX 28508146 28508244 -148465896 - MIR SINE MIR -36 172 81 367 231 13 0 chrX 28508244 28508322 -148465818 - MER116 DNA Mariner -1 79 1 281 327 0 42 chrX 28508322 28508356 -148465784 - MIR SINE MIR -127 81 47 499 276 167 19 chrX 28508456 28508666 -148465474 + MIR SINE MIR 9 249 -13 1121 78 0 46 chrX 28508719 28508872 -148465268 - L1PA10 LINE L1 -1 6167 6022 481 225 94 31 chrX 28508872 28509032 -148465108 - MLT1K LTR MaLR -19 569 400 2237 123 80 3 chrX 28509357 28509730 -148464410 - L1MC2 LINE L1 0 6344 5943 749 264 143 18 chrX 28510797 28511126 -148463014 - LTR16A LTR ERVL -80 370 1 2502 60 3 0 chrX 28511260 28511559 -148462581 + AluY SINE Alu 1 300 -11 2316 103 0 0 chrX 28512013 28512324 -148461816 - AluY SINE Alu 0 311 1 916 211 60 0 chrX 28512556 28512722 -148461418 + MER45A DNA AcHobo 1 176 -2 764 214 48 7 chrX 28513102 28513247 -148460893 + FRAM SINE Alu 1 146 -30 216 260 20 0 chrX 28513411 28513461 -148460679 + L2 LINE L2 3186 3236 -36 1998 160 72 62 chrX 28513597 28514097 -148460043 + MLT1D LTR MaLR 1 505 0 222 327 47 0 chrX 28514148 28514255 -148459885 + L3b LINE CR1 1247 1358 -225 1305 264 109 17 chrX 28514923 28515400 -148458740 - LTR33 LTR ERVL 0 521 1 620 336 143 22 chrX 28515443 28515998 -148458142 + L2 LINE L2 2627 3252 -20 2071 121 16 3 chrX 28516729 28517035 -148457105 - AluSx SINE Alu -2 310 1 2338 79 30 3 chrX 28517713 28518016 -148456124 - AluSq SINE Alu 0 313 3 431 337 45 6 chrX 28518646 28518824 -148455316 + MIR SINE MIR 12 196 -66 24 32 0 0 chrX 28518827 28518858 -148455282 + AT_rich Low_complexity Low_complexity 1 31 0 350 82 82 154 chrX 28518859 28518909 -148455231 - L1MB2 LINE L1 -3 6168 6129 1895 183 0 3 chrX 28518909 28519221 -148454919 - AluJo SINE Alu -1 311 1 350 82 82 154 chrX 28519221 28519280 -148454860 - L1MB2 LINE L1 -42 6129 6067 * 3946 150 54 39 chrX 28519274 28520422 -148453718 - L1MB2 LINE L1 -192 5979 4826 422 336 98 0 chrX 28520426 28520548 -148453592 + L2 LINE L2 3133 3266 -6 195 309 0 48 chrX 28520539 28520623 -148453517 + MIR SINE MIR 183 262 0 * 690 274 35 20 chrX 28520779 28520976 -148453164 + MIR SINE MIR 51 250 -12 261 286 48 0 chrX 28522055 28522139 -148452001 - L2 LINE L2 0 3313 3226 308 264 0 42 chrX 28522199 28522271 -148451869 - L2 LINE L2 0 3313 3245 754 287 107 87 chrX 28522549 28523099 -148451041 + MLT1K LTR MaLR 21 581 -7 2108 143 64 20 chrX 28523192 28523550 -148450590 - L1PB4 LINE L1 -2 6154 5781 231 300 17 0 chrX 28523764 28523824 -148450316 - MER5A DNA MER1_type 0 189 129 1033 71 0 0 chrX 28523826 28523953 -148450187 + AluSp/q SINE Alu 173 299 -14 373 248 0 80 chrX 28523954 28524067 -148450073 - MER5A DNA MER1_type -55 134 31 783 228 100 52 chrX 28524087 28524390 -148449750 - LTR16A1 LTR ERVL 0 457 157 218 403 67 49 chrX 28524772 28525177 -148448963 + L2 LINE L2 2812 3223 -49 2049 93 0 0 chrX 28525768 28526026 -148448114 + AluSq SINE Alu 1 258 -55 494 263 104 109 chrX 28526102 28526505 -148447635 + MLT1L LTR MaLR 111 615 0 24 32 0 0 chrX 28527642 28527673 -148446467 + AT_rich Low_complexity Low_complexity 1 31 0 54 40 0 0 chrX 28529149 28529224 -148444916 + GC_rich Low_complexity Low_complexity 1 75 0 207 0 0 0 chrX 28530589 28530612 -148443528 + (T)n Simple_repeat Simple_repeat 1 23 0 1964 113 36 36 chrX 28530938 28531328 -148442812 - MER3 DNA MER1_type 0 2624 2235 622 133 0 0 chrX 28531337 28531435 -148442705 - MER3 DNA MER1_type -87 122 72 231 250 0 0 chrX 28532388 28532436 -148441704 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 411 225 112 0 chrX 28533137 28533226 -148440914 + U6 snRNA snRNA 7 105 -2 222 375 125 0 chrX 28533255 28533391 -148440749 + L2 LINE L2 3116 3268 -4 608 292 6 11 chrX 28533486 28533664 -148440476 + MER5B DNA MER1_type 2 178 0 324 191 43 61 chrX 28535171 28535264 -148438876 - MIR SINE MIR -32 176 81 2095 101 27 20 chrX 28536288 28536456 -148437684 - AluSx SINE Alu -13 299 134 294 29 0 0 chrX 28536456 28536491 -148437649 + (TG)n Simple_repeat Simple_repeat 2 36 0 1839 80 42 49 chrX 28536491 28536777 -148437363 - AluY SINE Alu -27 284 1 2095 101 27 20 chrX 28536777 28536904 -148437236 - AluSx SINE Alu -177 135 1 613 241 28 0 chrX 28538942 28539083 -148435057 + MIR SINE MIR 71 215 -47 1023 24 0 0 chrX 28539127 28539250 -148434890 - L1PA4 LINE L1 -3 6152 6030 240 236 73 0 chrX 28539500 28539555 -148434585 + MIR SINE MIR 90 148 -60 230 73 24 0 chrX 28539654 28539695 -148434445 + (TA)n Simple_repeat Simple_repeat 1 42 0 719 164 0 0 chrX 28539715 28539831 -148434309 - FLAM_C SINE Alu -27 116 1 2189 137 0 0 chrX 28539878 28540191 -148433949 + AluSq SINE Alu 1 313 0 371 145 81 0 chrX 28540209 28540271 -148433869 + AluJ/FRAM SINE Alu 223 289 -13 886 29 0 0 chrX 28540289 28540393 -148433747 - L1PA7 LINE L1 -205 5949 5846 1689 51 0 14 chrX 28540393 28540607 -148433533 + L1PA7 LINE L1 5941 6154 0 26 0 0 0 chrX 28541341 28541367 -148432773 + AT_rich Low_complexity Low_complexity 1 26 0 268 241 0 81 chrX 28542106 28542193 -148431947 + MIR SINE MIR 118 197 -65 2247 113 0 0 chrX 28542252 28542543 -148431597 - AluSx SINE Alu -19 293 3 1994 120 27 7 chrX 28542827 28543128 -148431012 + AluSx SINE Alu 1 307 -5 960 178 32 11 chrX 28543501 28543686 -148430454 + MER5A DNA MER1_type 1 189 0 985 223 37 0 chrX 28543702 28543917 -148430223 + MER58A DNA MER1_type 1 223 -1 198 0 0 0 chrX 28544338 28544360 -148429780 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 1759 94 23 43 chrX 28544360 28544616 -148429524 - AluSx SINE Alu -33 279 29 2260 121 0 29 chrX 28544636 28544983 -148429157 + MER1B DNA MER1_type 1 337 0 408 298 29 0 chrX 28546435 28546539 -148427601 + L2 LINE L2 3199 3305 -8 254 318 64 9 chrX 28546870 28546980 -148427160 + MIR SINE MIR 100 215 -47 333 95 143 0 chrX 28547121 28547184 -148426956 - MER3 DNA MER1_type -12 197 126 2754 157 25 0 chrX 28547185 28547655 -148426485 + L1MB7 LINE L1 5336 5817 -361 2763 137 67 2 chrX 28547664 28548125 -148426015 + L1PA15 LINE L1 5675 6165 0 1153 211 93 6 chrX 28548129 28548494 -148425646 - L1M4 LINE L1 -1570 4576 4180 1866 172 11 16 chrX 28548494 28548871 -148425269 + L1MB7 LINE L1 5810 6184 0 807 171 8 0 chrX 28548871 28549000 -148425140 - MER3 DNA MER1_type -79 130 1 226 247 43 54 chrX 28549131 28549224 -148424916 - MIR SINE MIR -42 220 129 494 215 39 23 chrX 28549989 28550072 -148424068 - HAL1 LINE L1 -775 1732 1645 2205 148 132 20 chrX 28550072 28550526 -148423614 + MLT1D LTR MaLR 1 505 0 494 215 39 23 chrX 28550526 28550572 -148423568 - HAL1 LINE L1 -862 1645 1601 6484 235 66 41 chrX 28550596 28551218 -148422922 + L1M3e LINE L1 1242 1847 -5259 1766 135 45 58 chrX 28551218 28551530 -148422610 - AluJb SINE Alu -4 308 1 6484 235 66 41 chrX 28551530 28551685 -148422455 + L1M3e LINE L1 1847 1997 -5109 2279 116 0 0 chrX 28551685 28551986 -148422154 + AluSx SINE Alu 1 301 -11 6484 235 66 41 chrX 28551986 28554890 -148419250 + L1M3e LINE L1 1997 4738 -2368 409 276 16 24 chrX 28554997 28555124 -148419016 + MIR3 SINE MIR 82 207 -1 2747 159 60 35 chrX 28555253 28555784 -148418356 + L1M3e LINE L1 4735 5284 -1822 1945 93 45 0 chrX 28555784 28556071 -148418069 + L1MA3 LINE L1 6003 6305 0 2747 159 60 35 chrX 28556071 28556143 -148417997 + L1M3e LINE L1 5284 5353 -1753 1005 261 122 88 chrX 28556159 28557198 -148416942 - HAL1 LINE L1 -1432 1075 2 276 350 100 17 chrX 28557235 28557355 -148416785 + L2 LINE L2 3125 3254 -18 207 0 0 0 chrX 28558107 28558130 -148416010 + (T)n Simple_repeat Simple_repeat 1 23 0 282 289 135 10 chrX 28558167 28558271 -148415869 + L2 LINE L2 3197 3313 0 2197 206 48 11 chrX 28558362 28558921 -148415219 - L1M4 LINE L1 -5083 1459 880 1170 269 52 42 chrX 28558988 28559446 -148414694 - L1M4 LINE L1 -5675 867 405 255 305 73 0 chrX 28559790 28559872 -148414268 + L2 LINE L2 3137 3224 -48 528 260 33 28 chrX 28559899 28560080 -148414060 - L1ME LINE L1 -389 5732 5551 2076 126 7 7 chrX 28560093 28560394 -148413746 + AluSx SINE Alu 1 301 -11 21 0 0 0 chrX 28560486 28560507 -148413633 + AT_rich Low_complexity Low_complexity 1 21 0 1988 139 3 13 chrX 28560519 28560820 -148413320 - AluJb SINE Alu -14 298 1 23 0 0 0 chrX 28560995 28561018 -148413122 + AT_rich Low_complexity Low_complexity 1 23 0 2026 140 7 7 chrX 28561538 28561838 -148412302 + AluSx SINE Alu 1 300 -12 339 85 0 0 chrX 28562473 28562520 -148411620 + (CA)n Simple_repeat Simple_repeat 2 48 0 2141 76 16 6 chrX 28563222 28563537 -148410603 + L1P5 LINE L1 5299 5616 -535 1518 53 11 7 chrX 28563675 28563884 -148410256 + L1M1 LINE L1 5595 5793 -370 327 319 0 0 chrX 28563913 28564004 -148410136 + L1MC4 LINE L1 6614 6704 -1338 * 369 281 0 0 chrX 28563935 28564024 -148410116 - L1MC4 LINE L1 -1339 6703 6615 205 176 0 0 chrX 28564024 28564058 -148410082 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 2138 69 34 0 chrX 28564058 28564069 -148410071 + L1PB1 LINE L1 5782 5791 -360 231 114 0 0 chrX 28564069 28564104 -148410036 + (TA)n Simple_repeat Simple_repeat 2 36 0 2138 69 34 0 chrX 28564104 28564383 -148409757 + L1PB1 LINE L1 5791 6082 -69 468 0 0 0 chrX 28565383 28565435 -148408705 + (TG)n Simple_repeat Simple_repeat 1 52 0 197 356 19 19 chrX 28567205 28567309 -148406831 - MIR SINE MIR -82 180 77 747 264 100 55 chrX 28567732 28568221 -148405919 - MLT1J LTR MaLR 0 511 1 982 254 73 0 chrX 28568621 28568853 -148405287 + ERVL LTR ERVL 1375 1623 -4141 842 285 27 19 chrX 28570624 28570880 -148403260 - MIR SINE MIR 0 262 5 502 284 32 21 chrX 28571128 28571318 -148402822 - L2 LINE L2 -3 3310 3119 295 281 142 85 chrX 28571507 28571767 -148402373 - L2 LINE L2 -173 3099 2825 724 193 67 13 chrX 28572351 28572501 -148401639 - L1ME3A LINE L1 -5 6165 6008 1667 151 45 39 chrX 28573148 28573485 -148400655 + MER44D DNA MER2_type 1 609 0 438 114 23 34 chrX 28573923 28574011 -148400129 - L1PB1 LINE L1 -107 6044 5958 21 0 0 0 chrX 28574241 28574262 -148399878 + AT_rich Low_complexity Low_complexity 1 21 0 1766 122 52 18 chrX 28574263 28574549 -148399591 + MER65A LTR ERV1 117 412 -33 647 135 9 0 chrX 28574763 28574874 -148399266 - L1MB4 LINE L1 -2 6178 6067 394 264 74 20 chrX 28575620 28575768 -148398372 - MIR3 SINE MIR -15 193 38 896 253 37 17 chrX 28576309 28576550 -148397590 + MIR SINE MIR 6 251 -11 2705 81 60 0 chrX 28578168 28578551 -148395589 + L1PA10 LINE L1 5763 6168 0 499 62 0 167 chrX 28578581 28578637 -148395503 - MADE1 DNA Mariner 0 80 45 2210 102 3 7 chrX 28578637 28578942 -148395198 + AluSx SINE Alu 1 304 -8 499 62 0 167 chrX 28578942 28578981 -148395159 - MADE1 DNA Mariner -35 45 1 207 0 0 0 chrX 28579420 28579443 -148394697 + (T)n Simple_repeat Simple_repeat 1 23 0 2120 108 9 9 chrX 28579854 28580196 -148393944 + L1MC3 LINE L1 7443 7784 -1 1216 179 13 18 chrX 28580499 28580723 -148393417 - MER58A DNA MER1_type -1 223 1 701 274 114 20 chrX 28581100 28581494 -148392646 - MER113 DNA MER1_type? -1 520 90 * 1597 194 137 27 chrX 28581463 28581864 -148392276 + MLT1E3 LTR MaLR 180 624 0 575 250 126 57 chrX 28582205 28582891 -148391249 - L1MDa LINE L1 -4516 2024 1334 2071 150 0 0 chrX 28582891 28583197 -148390943 - AluSx SINE Alu -6 306 1 382 251 108 64 chrX 28583922 28584125 -148390015 - MIR SINE MIR -30 232 21 269 345 76 34 chrX 28585407 28585526 -148388614 - L2 LINE L2 0 3272 3149 189 0 0 0 chrX 28585747 28585768 -148388372 + (TGAG)n Simple_repeat Simple_repeat 4 24 0 1018 230 39 57 chrX 28586106 28586437 -148387703 + L1MDa LINE L1 17 341 -6199 1918 221 32 35 chrX 28586814 28587306 -148386834 + L1MDa LINE L1 793 1283 -5260 436 229 57 41 chrX 28587306 28587428 -148386712 - L2 LINE L2 -790 2524 2401 29 28 0 0 chrX 28588540 28588576 -148385564 + AT_rich Low_complexity Low_complexity 1 36 0 458 317 72 24 chrX 28589430 28589638 -148384502 + MIR SINE MIR 8 225 -37 2350 110 0 0 chrX 28590161 28590469 -148383671 - AluSx SINE Alu -4 308 1 201 293 51 83 chrX 28590473 28590630 -148383510 + L2 LINE L2 2900 3051 -221 682 109 41 23 chrX 28590707 28591010 -148383130 + (TA)n Simple_repeat Simple_repeat 1 308 0 285 128 0 0 chrX 28591449 28591496 -148382644 + (CA)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chrX 28592305 28592326 -148381814 + AT_rich Low_complexity Low_complexity 1 21 0 221 222 0 0 chrX 28592605 28592650 -148381490 - L2 LINE L2 -6 3307 3263 259 274 34 20 chrX 28592659 28592762 -148381378 + (TA)n Simple_repeat Simple_repeat 1 108 -40 3602 187 8 5 chrX 28592762 28593413 -148380727 + MER82 DNA MER2_type 1 653 0 259 274 34 20 chrX 28593413 28593455 -148380685 + (TA)n Simple_repeat Simple_repeat 108 148 0 23 54 0 0 chrX 28593711 28593748 -148380392 + AT_rich Low_complexity Low_complexity 1 37 0 1854 234 119 34 chrX 28594474 28595346 -148378794 - HAL1 LINE L1 -630 1877 777 1189 163 4 44 chrX 28595346 28595573 -148378567 + MER20 DNA MER1_type 1 218 -1 1854 234 119 34 chrX 28595573 28595905 -148378235 - HAL1 LINE L1 -1730 777 475 1436 64 0 0 chrX 28595914 28596087 -148378053 - AluY SINE Alu -12 299 127 1345 261 79 30 chrX 28596088 28596529 -148377611 - HAL1 LINE L1 -2023 484 22 441 0 0 0 chrX 28598454 28598503 -148375637 + (TG)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chrX 28598503 28598524 -148375616 + GC_rich Low_complexity Low_complexity 1 21 0 287 185 60 26 chrX 28598747 28598886 -148375254 - L1 LINE L1 -788 5358 5211 242 275 28 49 chrX 28598981 28599123 -148375017 - L2 LINE L2 -733 2581 2443 21 0 0 0 chrX 28600721 28600742 -148373398 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chrX 28601026 28601054 -148373086 + AT_rich Low_complexity Low_complexity 1 28 0 23 86 0 0 chrX 28601842 28601900 -148372240 + AT_rich Low_complexity Low_complexity 1 58 0 204 135 58 39 chrX 28602200 28602252 -148371888 + T-rich Low_complexity Low_complexity 2 54 0 1895 148 7 7 chrX 28602542 28602832 -148371308 - AluJb SINE Alu -22 290 1 4641 215 62 31 chrX 28603665 28604061 -148370079 + L1MB7 LINE L1 922 1304 -6263 2615 139 21 2 chrX 28604061 28604485 -148369655 - MSTB1 LTR MaLR 0 432 1 4641 215 62 31 chrX 28604485 28605969 -148368171 + L1MB7 LINE L1 1304 2939 -4628 3272 106 29 47 chrX 28605984 28606542 -148367598 - L1MA2 LINE L1 0 6304 5757 3313 91 0 0 chrX 28606642 28607084 -148367056 - L1MA3 LINE L1 -405 5900 5459 11804 221 30 21 chrX 28607117 28608861 -148365279 + L1MB7 LINE L1 3419 5146 -2457 2728 186 41 9 chrX 28608861 28609443 -148364697 + L1MB8 LINE L1 5567 6167 -11 11804 221 30 21 chrX 28609443 28610387 -148363753 + L1MB7 LINE L1 5146 6080 -1523 1988 122 30 7 chrX 28610387 28610683 -148363457 - AluSq SINE Alu -10 303 1 11804 221 30 21 chrX 28610683 28611151 -148362989 + L1MB7 LINE L1 6080 6542 -1061 1924 139 6 43 chrX 28611151 28611474 -148362666 + AluSx SINE Alu 1 311 -1 11804 221 30 21 chrX 28611474 28612100 -148362040 + L1MB7 LINE L1 6542 7245 -358 3752 243 22 17 chrX 28612101 28613212 -148360928 + L1ME3A LINE L1 3814 4971 -1175 3290 252 24 23 chrX 28613238 28614203 -148359937 + L1MD2 LINE L1 4058 5026 -1120 2228 81 3 17 chrX 28614203 28614499 -148359641 - AluSx SINE Alu -20 292 1 3290 252 24 23 chrX 28614499 28614590 -148359550 + L1MD2 LINE L1 5026 5115 -1031 4337 194 28 46 chrX 28614616 28614820 -148359320 + L1MD2 LINE L1 5283 5489 -870 802 159 0 0 chrX 28614820 28614946 -148359194 + FLAM_C SINE Alu 1 126 -7 4337 194 28 46 chrX 28614946 28615825 -148358315 + L1MD2 LINE L1 5489 6346 -13 27 49 0 0 chrX 28616329 28616370 -148357770 + AT_rich Low_complexity Low_complexity 1 41 0 1028 94 0 0 chrX 28617632 28617759 -148356381 + AluSq/x SINE Alu 1 127 -185 850 156 46 110 chrX 28618218 28618436 -148355704 - MER92B LTR ERV1 0 636 433 882 237 32 77 chrX 28618483 28618821 -148355319 + Charlie2 DNA MER1_type 8 330 -2532 * 1162 162 81 65 chrX 28618812 28618945 -148355195 + Charlie2 DNA MER1_type 1856 1985 -877 1977 124 0 11 chrX 28618945 28619227 -148354913 + AluJb SINE Alu 12 290 -22 1162 162 81 65 chrX 28619227 28619319 -148354821 + Charlie2 DNA MER1_type 1985 2074 -788 2831 165 51 7 chrX 28619319 28619789 -148354351 - L1MB7 LINE L1 0 6184 5685 2874 219 35 9 chrX 28619789 28620425 -148353715 - MER82 DNA MER2_type -1 652 1 2831 165 51 7 chrX 28620425 28620505 -148353635 - L1MB7 LINE L1 -499 5685 5610 1162 162 81 65 chrX 28620505 28620599 -148353541 + Charlie2 DNA MER1_type 2074 2181 -681 2260 88 0 7 chrX 28620995 28621307 -148352833 - AluSx SINE Alu 0 310 1 369 301 121 34 chrX 28621491 28621697 -148352443 - MIR SINE MIR -2 260 37 304 224 75 93 chrX 28621821 28621928 -148352212 + L2 LINE L2 3208 3312 -1 2565 49 7 0 chrX 28622139 28622445 -148351695 - AluY SINE Alu -3 308 1 2801 202 63 57 chrX 28622654 28622684 -148351456 + L1ME3A LINE L1 5322 5350 -820 2095 140 3 0 chrX 28622684 28622984 -148351156 + AluJb SINE Alu 1 301 -11 2801 202 63 57 chrX 28622984 28623227 -148350913 + L1ME3A LINE L1 5350 5590 -580 540 0 0 0 chrX 28623227 28623287 -148350853 + (TA)n Simple_repeat Simple_repeat 2 61 0 2801 202 63 57 chrX 28623287 28623815 -148350325 + L1ME3A LINE L1 5590 6129 -41 460 304 113 10 chrX 28624802 28624996 -148349144 + MIR SINE MIR 34 247 -15 1965 171 48 11 chrX 28625358 28625710 -148348430 + MLT1A1 LTR MaLR 1 365 0 1913 132 3 17 chrX 28626207 28626518 -148347622 + AluSx SINE Alu 1 307 0 279 197 0 61 chrX 28626575 28626641 -148347499 + MLT1A1 LTR MaLR 147 208 -157 568 285 14 7 chrX 28626692 28626836 -148347304 - MLT1H1 LTR MaLR -410 145 1 256 128 82 0 chrX 28627686 28627735 -148346405 - LTR41 LTR ERVL 0 795 726 1496 123 0 0 chrX 28627758 28627994 -148346146 - L1MA2 LINE L1 -4 6300 6065 1245 262 135 52 chrX 28628003 28628678 -148345462 - LTR41 LTR ERVL -40 733 3 184 370 115 37 chrX 28628832 28629075 -148345065 - L2 LINE L2 -842 2472 2211 405 348 108 10 chrX 28629169 28629474 -148344666 - L2 LINE L2 -1158 2156 1822 284 339 24 24 chrX 28630225 28630349 -148343791 + MIR SINE MIR 6 129 -133 2381 87 3 3 chrX 28630358 28630670 -148343470 - AluSx SINE Alu 0 312 1 675 235 220 14 chrX 28630862 28631171 -148342969 - MLT1G3 LTR MaLR 0 590 153 3666 225 95 62 chrX 28631176 28633715 -148340425 - L1ME2 LINE L1 -282 5951 3327 280 186 0 0 chrX 28633737 28633796 -148340344 - L1M4 LINE L1 -960 5186 5128 1300 345 17 49 chrX 28633894 28634449 -148339691 - L1M4 LINE L1 -991 5155 4619 441 0 0 0 chrX 28634449 28634498 -148339642 + (CA)n Simple_repeat Simple_repeat 2 50 0 1300 345 17 49 chrX 28634498 28634536 -148339604 - L1M4 LINE L1 -1527 4619 4581 505 280 48 20 chrX 28634671 28634964 -148339176 - L1M4 LINE L1 -1564 4582 4282 432 194 86 0 chrX 28634975 28635068 -148339072 + Tigger4(Zombi) DNA MER2_type 5 105 -2626 375 125 0 0 chrX 28635070 28635126 -148339014 + Tigger4(Zombi) DNA MER2_type 2676 2731 0 1447 199 52 52 chrX 28635126 28635584 -148338556 - L1M4 LINE L1 -1874 4272 3815 1494 244 64 13 chrX 28635594 28636218 -148337922 - L1M4 LINE L1 -2437 3709 3054 539 235 154 5 chrX 28636212 28636433 -148337707 - L1M4 LINE L1 -3507 2639 2386 * 1754 163 32 0 chrX 28636492 28636774 -148337366 + AluJb SINE Alu 1 291 -21 277 284 35 22 chrX 28636775 28637320 -148336820 - L1ME2 LINE L1 -4947 1449 828 398 331 23 12 chrX 28637538 28637795 -148336345 - L1ME2 LINE L1 -6030 366 107 40642 53 2 4 chrX 28637891 28644056 -148330084 - L1PA5 LINE L1 -1 6153 1 546 279 77 40 chrX 28644159 28644396 -148329744 - MIR SINE MIR -6 256 8 1457 201 70 39 chrX 28644396 28644487 -148329653 + MSTD LTR MaLR 1 88 -308 2199 106 3 0 chrX 28644487 28644800 -148329340 + AluSq SINE Alu 1 314 0 1457 201 70 39 chrX 28644800 28645091 -148329049 + MSTD LTR MaLR 88 396 0 207 0 0 0 chrX 28645399 28645422 -148328718 + (TTG)n Simple_repeat Simple_repeat 2 24 0 502 291 96 17 chrX 28645645 28646051 -148328089 - L1MC4a LINE L1 -1631 6177 5740 187 347 63 32 chrX 28646054 28646149 -148327991 - L2 LINE L2 -20 3252 3155 2119 124 0 0 chrX 28648285 28648576 -148325564 - AluSx SINE Alu -21 291 1 399 238 138 63 chrX 28648646 28649031 -148325109 - HAL1 LINE L1 0 2507 2152 2124 116 7 13 chrX 28649031 28649334 -148324806 - AluSg SINE Alu -9 301 1 399 238 138 63 chrX 28649334 28649749 -148324391 - HAL1 LINE L1 -355 2152 1579 724 259 61 9 chrX 28649765 28649977 -148324163 + MIR SINE MIR 5 227 -35 932 256 68 38 chrX 28649979 28650479 -148323661 - HAL1 LINE L1 -1046 1461 947 314 253 89 89 chrX 28650731 28650877 -148323263 - HAL1 LINE L1 -1870 637 492 233 258 11 34 chrX 28650953 28651042 -148323098 - HAL1 LINE L1 -2155 352 266 894 262 63 19 chrX 28651122 28651439 -148322701 - LTR16B LTR ERVL -7 457 127 680 168 198 38 chrX 28651439 28651677 -148322463 - L1M4b LINE L1 -5347 1512 1237 554 196 0 0 chrX 28651728 28651830 -148322310 - L1M4b LINE L1 -5781 1078 977 2465 42 3 3 chrX 28651830 28652136 -148322004 + L1PA4 LINE L1 5846 6151 -4 503 248 8 0 chrX 28652208 28652337 -148321803 + L1M3d LINE L1 1042 1171 -4720 368 315 78 103 chrX 28652494 28652903 -148321237 - L1M4b LINE L1 -6165 694 296 622 244 57 21 chrX 28653125 28653318 -148320822 - L1M4b LINE L1 -6649 210 11 2195 102 0 17 chrX 28653348 28653643 -148320497 - AluSx SINE Alu -22 290 1 204 147 88 29 chrX 28653702 28653770 -148320370 + (AATTG)n Simple_repeat Simple_repeat 4 75 0 621 206 65 144 chrX 28653930 28654048 -148320092 + MIR SINE MIR 2 128 -134 2218 117 7 0 chrX 28654048 28654348 -148319792 - AluSx SINE Alu -10 302 1 621 206 65 144 chrX 28654348 28654506 -148319634 + MIR SINE MIR 128 256 -6 26 30 0 0 chrX 28654842 28654875 -148319265 + AT_rich Low_complexity Low_complexity 1 33 0 484 255 41 66 chrX 28655110 28655306 -148318834 + MIR3 SINE MIR 16 206 -2 312 317 43 43 chrX 28655488 28655649 -148318491 - L2 LINE L2 -191 3081 2921 267 334 123 39 chrX 28655864 28656196 -148317944 - L2 LINE L2 -505 2809 2450 381 291 143 37 chrX 28656570 28656759 -148317381 - MIR SINE MIR -52 210 2 493 160 8 145 chrX 28656813 28656944 -148317196 + MER81 DNA DNA 1 113 -1 188 83 0 28 chrX 28657198 28657234 -148316906 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1843 147 0 11 chrX 28657236 28657515 -148316625 - AluJb SINE Alu -31 281 6 294 221 74 0 chrX 28658158 28658253 -148315887 - L1ME1 LINE L1 -4 6162 6061 334 283 85 9 chrX 28659545 28659651 -148314489 + MIR SINE MIR 37 150 -58 237 132 0 0 chrX 28659651 28659689 -148314451 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 229 297 127 25 chrX 28659758 28659876 -148314264 + L3b LINE CR1 1357 1486 -97 1344 180 43 7 chrX 28659990 28660295 -148313845 + MER33 DNA MER1_type 9 324 0 2027 157 3 0 chrX 28660311 28660611 -148313529 + AluJo SINE Alu 1 301 -11 21 0 0 0 chrX 28661040 28661061 -148313079 + AT_rich Low_complexity Low_complexity 1 21 0 2234 85 31 37 chrX 28661085 28661155 -148312985 + L1PB1 LINE L1 5800 5869 -282 2384 95 0 7 chrX 28661155 28661460 -148312680 - AluSx SINE Alu -9 303 1 2234 85 31 37 chrX 28661460 28661741 -148312399 + L1PB1 LINE L1 5869 6149 -2 885 121 0 0 chrX 28662534 28662650 -148311490 + AluSx SINE Alu 1 116 -197 1319 130 0 5 chrX 28662781 28662966 -148311174 + AluSx SINE Alu 112 295 -17 435 268 174 16 chrX 28663831 28664021 -148310119 + MIR SINE MIR 2 221 -41 2333 98 0 7 chrX 28664721 28665027 -148309113 - AluSq SINE Alu -9 304 1 683 308 87 52 chrX 28666080 28666366 -148307774 + L3 LINE CR1 339 642 -935 734 147 0 70 chrX 28666366 28666509 -148307631 + FLAM_C SINE Alu 1 133 0 683 308 87 52 chrX 28666509 28666589 -148307551 + L3 LINE CR1 642 718 -859 1608 268 59 26 chrX 28666590 28667164 -148306976 - MLT1E LTR MaLR 0 593 1 537 283 242 21 chrX 28667165 28667550 -148306590 + L3 LINE CR1 716 1185 -392 350 182 9 82 chrX 28667551 28667594 -148306546 - Charlie2 DNA MER1_type -5 2857 2812 2167 143 0 0 chrX 28667594 28667901 -148306239 + AluJb SINE Alu 1 307 -5 350 182 9 82 chrX 28667901 28667967 -148306173 - Charlie2 DNA MER1_type -50 2812 2756 2338 77 7 3 chrX 28668006 28668305 -148305835 - AluSg SINE Alu -10 300 1 864 170 0 32 chrX 28668305 28668493 -148305647 - Charlie2a DNA MER1_type -1207 1655 1474 298 268 94 31 chrX 28668528 28668655 -148305485 - Charlie2b DNA MER1_type -2090 692 558 469 270 0 0 chrX 28668807 28668922 -148305218 - Charlie2b DNA MER1_type -2747 115 1 700 333 116 16 chrX 28669010 28669328 -148304812 + L3 LINE CR1 1221 1570 -7 2216 83 55 0 chrX 28669328 28669618 -148304522 - AluSx SINE Alu -6 306 1 1987 130 13 0 chrX 28669730 28670038 -148304102 - AluSx SINE Alu 0 312 1 427 270 51 22 chrX 28670150 28670287 -148303853 + MIR SINE MIR 1 141 -121 624 198 130 36 chrX 28670612 28670865 -148303275 - L1MC5 LINE L1 -48 7913 7637 1711 180 21 7 chrX 28671664 28671947 -148302193 + AluJb SINE Alu 1 287 -25 2216 119 0 0 chrX 28671952 28672245 -148301895 + AluSx SINE Alu 1 293 -19 47 73 0 0 chrX 28672890 28672986 -148301154 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 28673032 28673055 -148301085 + AT_rich Low_complexity Low_complexity 1 23 0 2985 140 85 23 chrX 28673377 28673906 -148300234 - MER68 LTR ERV1 0 562 1 2458 77 0 0 chrX 28674370 28674667 -148299473 + AluSq SINE Alu 1 297 -16 503 251 70 45 chrX 28674821 28675064 -148299076 - L1ME4a LINE L1 -262 5859 5611 240 272 52 58 chrX 28675133 28675306 -148298834 - L1ME3A LINE L1 -35 6118 5947 2296 94 10 0 chrX 28675394 28675691 -148298449 - AluSx SINE Alu -12 300 1 449 207 209 6 chrX 28675697 28675884 -148298256 - L1ME3A LINE L1 -232 5913 5690 693 234 126 59 chrX 28675933 28676540 -148297600 - L1ME3A LINE L1 -1483 4646 3891 3363 175 132 53 chrX 28676543 28676852 -148297288 + Tigger3b DNA MER2_type 1 284 -2744 7695 27 1 1 chrX 28676852 28678509 -148295631 - L1PA3 LINE L1 0 6155 4499 3363 175 132 53 chrX 28678509 28679339 -148294801 + Tigger3b DNA MER2_type 284 1230 -1 1723 163 44 10 chrX 28679497 28679791 -148294349 - AluJb SINE Alu -1 311 8 761 225 127 62 chrX 28679796 28679898 -148294242 - L1ME3A LINE L1 -2476 3653 3559 2097 112 0 7 chrX 28679898 28680183 -148293957 - AluSx SINE Alu -29 283 1 761 225 127 62 chrX 28680183 28680526 -148293614 - L1ME3A LINE L1 -2570 3559 3162 2410 92 16 0 chrX 28680526 28680832 -148293308 - AluSx SINE Alu -1 311 1 761 225 127 62 chrX 28680832 28680945 -148293195 - L1ME3A LINE L1 -2967 3162 3058 575 279 121 34 chrX 28680927 28682169 -148291971 - L1MEd LINE L1 -3997 2313 919 * 2003 71 90 11 chrX 28682212 28682480 -148291660 + AluSq SINE Alu 1 289 -24 289 77 0 0 chrX 28682499 28682538 -148291602 + AluSp/q SINE Alu 251 289 -14 707 127 8 0 chrX 28682540 28682658 -148291482 + (TAGA)n Simple_repeat Simple_repeat 3 121 0 321 369 92 10 chrX 28682738 28682933 -148291207 - L1MEd LINE L1 -5295 824 614 1689 170 18 4 chrX 28682933 28683234 -148290906 - AluJo SINE Alu 0 305 1 1537 170 4 0 chrX 28683470 28683717 -148290423 + AluJo SINE Alu 65 312 0 824 135 7 21 chrX 28684073 28684214 -148289926 - FLAM_C SINE Alu -3 140 2 2890 201 147 84 chrX 28684340 28684926 -148289214 + L1MC3 LINE L1 6477 7025 -760 355 169 0 31 chrX 28684926 28684991 -148289149 + MLT1F1 LTR MaLR 63 125 -442 2890 201 147 84 chrX 28684991 28685507 -148288633 + L1MC3 LINE L1 7025 7725 -60 1316 202 13 8 chrX 28685507 28685745 -148288395 + MER8 DNA MER2_type 1 239 0 2890 201 147 84 chrX 28685745 28685799 -148288341 + L1MC3 LINE L1 7725 7774 -11 515 190 67 123 chrX 28685899 28686001 -148288139 + L1MC5 LINE L1 7644 7750 -211 2080 129 0 0 chrX 28686001 28686296 -148287844 - AluJb SINE Alu -17 295 1 515 190 67 123 chrX 28686296 28686461 -148287679 + L1MC5 LINE L1 7750 7896 -65 204 59 0 59 chrX 28686780 28686814 -148287326 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 631 182 109 18 chrX 28686820 28686985 -148287155 - L1MD2 LINE L1 -16 6343 6164 * 640 261 111 36 chrX 28686981 28687549 -148286591 - L1MC4a LINE L1 -1595 6213 5521 908 327 157 18 chrX 28687959 28688703 -148285437 - L2 LINE L2 -474 2840 1993 202 239 119 15 chrX 28689093 28689160 -148284980 - L2 LINE L2 -214 3058 2985 1958 138 3 3 chrX 28689230 28689520 -148284620 - AluJb SINE Alu -21 291 2 421 266 29 53 chrX 28690157 28690364 -148283776 + L1MEd LINE L1 1025 1226 -4893 268 377 52 7 chrX 28690371 28690525 -148283615 - L2 LINE L2 -933 2381 2221 958 218 65 20 chrX 28690683 28690931 -148283209 + MIR SINE MIR 2 260 -2 366 292 50 3 chrX 28692249 28692368 -148281772 + MIR SINE MIR 1 128 -80 276 250 57 34 chrX 28692937 28693025 -148281115 - MIR3 SINE MIR -31 177 88 270 263 0 13 chrX 28693059 28693135 -148281005 + LTR67 LTR ERVL 4 78 -479 2457 97 0 0 chrX 28694219 28694530 -148279610 - AluSq SINE Alu -2 311 1 1461 161 128 4 chrX 28694884 28695127 -148279013 + AluJo SINE Alu 2 274 -38 1071 198 8 44 chrX 28695820 28696068 -148278072 + MIR SINE MIR 24 262 0 796 236 101 19 chrX 28696092 28696359 -148277781 - L1ME3A LINE L1 -229 5941 5653 * 2028 251 186 42 chrX 28696344 28697506 -148276634 - L1ME3A LINE L1 -1228 4918 3924 2421 84 0 0 chrX 28697506 28697804 -148276336 + AluSc SINE Alu 1 298 -11 2028 251 186 42 chrX 28697804 28698270 -148275870 - L1ME3A LINE L1 -2222 3924 3526 1767 152 14 24 chrX 28698270 28698567 -148275573 - AluJb SINE Alu -18 294 1 2028 251 186 42 chrX 28698567 28698759 -148275381 - L1ME3A LINE L1 -2620 3526 2835 1844 189 0 0 chrX 28698777 28699079 -148275061 - AluJo SINE Alu -10 302 1 227 189 164 8 chrX 28699079 28699201 -148274939 - L1M4 LINE L1 -2921 3225 3085 725 255 119 7 chrX 28699565 28699867 -148274273 - L1ME4a LINE L1 -255 5866 5531 416 206 36 41 chrX 28700044 28700093 -148274047 - L1M4 LINE L1 -3175 2971 2923 1974 152 3 3 chrX 28700093 28700389 -148273751 + AluSx SINE Alu 2 297 -15 416 206 36 41 chrX 28700389 28700533 -148273607 - L1M4 LINE L1 -3223 2923 2779 1867 154 0 35 chrX 28700605 28700924 -148273216 - AluJo SINE Alu -4 308 1 1739 157 0 48 chrX 28701289 28701602 -148272538 + AluJo SINE Alu 1 298 -14 430 173 0 0 chrX 28701732 28701807 -148272333 + MER5C DNA MER1_type 50 124 -200 370 154 0 0 chrX 28701835 28701906 -148272234 - MER34C LTR ERV1 -471 101 1 306 309 41 0 chrX 28701982 28702079 -148272061 - L1ME4a LINE L1 -4 6117 6017 23 86 0 0 chrX 28702519 28702577 -148271563 + AT_rich Low_complexity Low_complexity 1 58 0 535 289 109 8 chrX 28702711 28702977 -148271163 + L1ME LINE L1 4378 4670 -1476 2138 122 0 3 chrX 28702996 28703291 -148270849 + AluSx SINE Alu 1 294 -18 1111 109 0 0 chrX 28703391 28703538 -148270602 + AluSg/x SINE Alu 162 308 -2 2086 108 17 14 chrX 28703614 28703911 -148270229 - AluSx SINE Alu -14 298 1 608 249 83 38 chrX 28704967 28705173 -148268967 + L1ME LINE L1 5381 5605 -516 2436 41 3 10 chrX 28705173 28705466 -148268674 + AluY SINE Alu 1 291 -20 608 249 83 38 chrX 28705466 28705548 -148268592 + L1ME LINE L1 5605 5682 -439 207 0 0 0 chrX 28706244 28706267 -148267873 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chrX 28706834 28706858 -148267282 + AT_rich Low_complexity Low_complexity 1 24 0 2241 114 7 0 chrX 28707598 28707906 -148266234 + AluSq SINE Alu 1 310 -3 2566 37 3 0 chrX 28708270 28708569 -148265571 + AluY SINE Alu 1 300 -11 2041 109 4 11 chrX 28708804 28709078 -148265062 - AluSx SINE Alu -30 282 11 290 297 157 42 chrX 28709988 28710224 -148263916 + L3 LINE CR1 1310 1572 -5 2331 109 0 0 chrX 28711730 28712041 -148262099 + AluSq SINE Alu 1 311 -2 189 0 0 0 chrX 28712240 28712261 -148261879 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2410 73 0 0 chrX 28714638 28714926 -148259214 + AluSx SINE Alu 1 288 -24 239 254 51 0 chrX 28715368 28715427 -148258713 - L2 LINE L2 0 3313 3252 400 274 113 81 chrX 28715466 28715985 -148258155 - MLT1G1 LTR MaLR -1 587 16 395 274 97 0 chrX 28716035 28716159 -148257981 - L2 LINE L2 -215 3057 2922 2091 97 0 17 chrX 28716362 28716698 -148257442 - AluJb SINE Alu 0 333 3 1751 260 15 23 chrX 28716812 28717289 -148256851 - L2 LINE L2 -3 3310 2838 405 226 0 104 chrX 28717296 28717402 -148256738 - L2 LINE L2 -722 2592 2498 895 129 81 21 chrX 28718090 28718276 -148255864 - MER20 DNA MER1_type -22 197 1 544 112 34 0 chrX 28718409 28718498 -148255642 + AluSp/q SINE Alu 213 304 -9 772 152 8 23 chrX 28718519 28718651 -148255489 - FLAM_C SINE Alu -3 130 1 1203 219 0 5 chrX 28720162 28720386 -148253754 + MER58A DNA MER1_type 1 223 -1 413 316 13 20 chrX 28720439 28720591 -148253549 + MIR3 SINE MIR 55 205 -3 744 174 0 43 chrX 28720683 28720821 -148253319 + FLAM_C SINE Alu 1 132 -1 2158 110 0 3 chrX 28721357 28721647 -148252493 + AluJb SINE Alu 1 289 -23 2355 60 0 3 chrX 28722699 28723023 -148251117 - AluY SINE Alu 0 323 1 227 125 0 0 chrX 28723256 28723288 -148250852 + FLAM_C SINE Alu 127 158 0 1837 91 4 42 chrX 28723296 28723560 -148250580 - AluSg SINE Alu -12 298 45 1280 160 10 5 chrX 28723561 28723755 -148250385 + AluJb SINE Alu 102 296 -16 1884 139 7 37 chrX 28724416 28724711 -148249429 + AluJo SINE Alu 3 288 -24 21 0 0 0 chrX 28725013 28725034 -148249106 + AT_rich Low_complexity Low_complexity 1 21 0 2068 149 0 10 chrX 28725043 28725352 -148248788 - AluJb SINE Alu -6 306 1 1409 189 0 23 chrX 28725487 28725751 -148248389 + AluJb SINE Alu 3 260 -52 201 154 0 0 chrX 28726109 28726148 -148247992 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 294 95 0 0 chrX 28726671 28726713 -148247427 + (TA)n Simple_repeat Simple_repeat 2 43 0 1857 108 26 99 chrX 28726831 28727174 -148246966 - AluYb8 SINE Alu 0 318 1 292 233 192 8 chrX 28727176 28727296 -148246844 + MIR SINE MIR 118 259 -3 473 306 27 14 chrX 28727340 28727487 -148246653 - MIR SINE MIR -108 154 6 2506 81 0 3 chrX 28727839 28728149 -148245991 - AluSc SINE Alu 0 309 1 491 277 6 78 chrX 28728180 28728346 -148245794 - L2 LINE L2 -631 2683 2530 654 227 18 0 chrX 28728353 28728372 -148245768 - L1MA10 LINE L1 0 6334 6316 3961 171 41 18 chrX 28728372 28728985 -148245155 - L1ME1 LINE L1 -10 6156 5516 2254 109 0 0 chrX 28728985 28729279 -148244861 - AluSg SINE Alu -16 294 1 3961 171 41 18 chrX 28729279 28729537 -148244603 - L1ME1 LINE L1 -650 5516 5265 21 0 0 0 chrX 28729655 28729676 -148244464 + AT_rich Low_complexity Low_complexity 1 21 0 1689 108 0 0 chrX 28729755 28729978 -148244162 - AluSq SINE Alu -5 308 86 27 49 0 0 chrX 28730477 28730518 -148243622 + AT_rich Low_complexity Low_complexity 1 41 0 11791 40 1 17 chrX 28730528 28733001 -148241139 - L1PA5 LINE L1 -5 6149 3705 7149 74 2 1 chrX 28733001 28733935 -148240205 + MER11C LTR ERVK 1 935 -136 10670 82 5 1 chrX 28733949 28735421 -148238719 + HERVK11 LTR ERVK 5287 6765 -1188 7536 67 5 3 chrX 28735405 28736403 -148237737 + HERVK11 LTR ERVK 6954 7953 0 * 8648 50 10 8 chrX 28736403 28737472 -148236668 + MER11C LTR ERVK 1 1071 0 12645 38 6 4 chrX 28737472 28739163 -148234977 - L1P LINE L1 -2436 3710 2017 358 127 0 0 chrX 28739317 28739380 -148234760 - Alu SINE Alu 0 302 240 1914 144 28 0 chrX 28740270 28740555 -148233585 - AluJo SINE Alu -19 293 1 323 290 19 56 chrX 28740618 28740725 -148233415 - L3 LINE CR1 -508 1069 967 577 240 145 11 chrX 28740896 28741075 -148233065 - MIR SINE MIR -58 204 2 1178 228 37 97 chrX 28741622 28742395 -148231745 + L1ME3A LINE L1 5174 5938 -232 2473 85 0 0 chrX 28743008 28743315 -148230825 - AluSc SINE Alu -1 308 2 2467 76 3 0 chrX 28743421 28743725 -148230415 - AluSp SINE Alu -7 306 2 280 244 126 17 chrX 28743927 28744046 -148230094 + MIR SINE MIR 125 256 -6 243 132 0 0 chrX 28744973 28745011 -148229129 - Alu SINE Alu -34 265 228 2308 98 0 3 chrX 28745013 28745310 -148228830 + AluSx SINE Alu 5 300 -12 2303 84 7 0 chrX 28746665 28746951 -148227189 + AluSx SINE Alu 1 288 -24 283 345 73 0 chrX 28747400 28747510 -148226630 - L2 LINE L2 -6 3266 3149 2357 74 3 3 chrX 28747790 28748086 -148226054 + AluSq SINE Alu 3 298 -15 614 270 64 35 chrX 28748095 28748440 -148225700 - L1ME3A LINE L1 -222 5948 5594 1061 172 0 21 chrX 28750409 28750595 -148223545 + AluJo SINE Alu 121 302 -10 331 196 9 24 chrX 28751617 28751744 -148222396 + MIR SINE MIR 76 256 -6 2448 90 0 0 chrX 28752264 28752574 -148221566 - AluSq SINE Alu -3 310 1 209 412 0 12 chrX 28752833 28752918 -148221222 + L2 LINE L2 3141 3224 -48 727 303 242 19 chrX 28752928 28753515 -148220625 + L3 LINE CR1 787 1504 -73 808 241 6 12 chrX 28753517 28753687 -148220453 - MER5B DNA MER1_type 0 178 10 427 256 33 133 chrX 28753713 28753847 -148220293 - MIR SINE MIR -5 257 111 724 145 0 65 chrX 28753847 28753985 -148220155 + FLAM_C SINE Alu 1 129 -4 427 256 33 133 chrX 28753985 28754041 -148220099 - MIR SINE MIR -151 111 99 2216 87 56 0 chrX 28754041 28754329 -148219811 - AluSg SINE Alu -5 305 2 427 256 33 133 chrX 28754329 28754407 -148219733 - MIR SINE MIR -163 99 15 2131 145 3 0 chrX 28754934 28755244 -148218896 + AluJb SINE Alu 1 311 -1 1965 118 0 46 chrX 28755246 28755551 -148218589 + AluSx SINE Alu 1 291 -21 203 200 0 0 chrX 28756974 28757009 -148217131 + T-rich Low_complexity Low_complexity 1 35 0 2294 176 34 22 chrX 28757871 28757919 -148216221 - L1MB2 LINE L1 0 6171 6125 2294 103 3 22 chrX 28757919 28758230 -148215910 - AluSq SINE Alu -8 305 1 2294 176 34 22 chrX 28758230 28758680 -148215460 - L1MB2 LINE L1 -46 6125 5667 844 220 11 26 chrX 28759113 28759293 -148214847 + L2 LINE L2 1110 1286 -2028 560 199 126 136 chrX 28759293 28759370 -148214770 + MER5A DNA MER1_type 1 77 -112 891 165 0 0 chrX 28759370 28759503 -148214637 + FLAM_A SINE Alu 1 133 0 560 199 126 136 chrX 28759503 28759516 -148214624 + MER5A DNA MER1_type 77 89 -100 2444 82 0 3 chrX 28759516 28759819 -148214321 + AluSx SINE Alu 1 302 -10 560 199 126 136 chrX 28759819 28759918 -148214222 + MER5A DNA MER1_type 89 189 0 572 264 40 0 chrX 28759918 28760066 -148214074 + L2 LINE L2 1280 1433 -1881 1912 152 7 7 chrX 28760124 28760426 -148213714 + AluJb SINE Alu 1 302 -10 319 194 257 27 chrX 28760538 28760760 -148213380 + L1MC4a LINE L1 5988 6260 -1548 398 205 33 25 chrX 28760806 28760928 -148213212 - L1MC4 LINE L1 -1 8041 7919 2357 196 142 17 chrX 28760949 28761111 -148213029 - L1MC4 LINE L1 -207 7835 7695 2103 115 0 3 chrX 28761111 28761397 -148212743 + AluSx SINE Alu 3 287 -25 2357 196 142 17 chrX 28761397 28761938 -148212202 - L1MC4 LINE L1 -347 7695 7044 847 113 152 0 chrX 28762153 28762304 -148211836 - Tigger2 DNA MER2_type -10 2708 2535 428 159 0 0 chrX 28762324 28762393 -148211747 - AluJ/FLAM SINE Alu -243 69 1 1384 129 7 91 chrX 28762393 28762440 -148211700 + Tigger2 DNA MER2_type 1030 1079 -1639 1904 153 10 10 chrX 28762440 28762748 -148211392 + 7SLRNA srpRNA srpRNA 1 308 -12 1384 129 7 91 chrX 28762748 28762987 -148211153 + Tigger2 DNA MER2_type 1079 1292 -1426 382 115 16 0 chrX 28762987 28763048 -148211092 - Tigger2 DNA MER2_type -1379 1339 1278 1464 131 12 37 chrX 28763052 28763296 -148210844 + AluJo SINE Alu 61 298 -14 5111 134 48 60 chrX 28763297 28763350 -148210790 - Tigger2 DNA MER2_type -1679 1039 987 1720 161 91 0 chrX 28763350 28763636 -148210504 - AluSx SINE Alu 0 312 1 5111 134 48 60 chrX 28763636 28763943 -148210197 - Tigger2 DNA MER2_type -1731 987 678 1982 103 0 4 chrX 28763943 28764204 -148209936 - AluSq SINE Alu -13 300 41 5111 134 48 60 chrX 28764204 28764893 -148209247 - Tigger2 DNA MER2_type -2040 678 2 2365 80 13 0 chrX 28764967 28765269 -148208871 - AluSp SINE Alu -6 307 2 927 209 13 94 chrX 28765300 28765396 -148208744 + L1MC5 LINE L1 6703 6805 -1212 2361 104 0 0 chrX 28765396 28765705 -148208435 - AluSc SINE Alu 0 309 1 1879 121 96 0 chrX 28765707 28765979 -148208161 - AluSx SINE Alu -14 298 1 927 209 13 94 chrX 28765979 28766334 -148207806 + L1MC5 LINE L1 6806 7076 -941 1501 186 77 45 chrX 28766338 28766780 -148207360 + L1ME2 LINE L1 5699 6154 -10 765 188 24 72 chrX 28766787 28766995 -148207145 - AluJ SINE Alu -3 309 112 813 205 40 63 chrX 28767383 28767685 -148206455 + L1MC5 LINE L1 7271 7565 -396 302 240 133 36 chrX 28767784 28767980 -148206160 + L1MC5 LINE L1 7609 7823 -138 302 207 0 0 chrX 28768098 28768156 -148205984 + L1MC5 LINE L1 7836 7893 -68 3162 258 95 17 chrX 28768177 28768738 -148205402 + L2 LINE L2 1721 2237 -1077 885 105 0 70 chrX 28768738 28768881 -148205259 - AluJ SINE Alu -169 133 1 3162 258 95 17 chrX 28768881 28769325 -148204815 + L2 LINE L2 2237 2805 -509 284 268 216 0 chrX 28771341 28771438 -148202702 + L2 LINE L2 3180 3297 -16 221 225 0 0 chrX 28771404 28771444 -148202696 + MIR SINE MIR 219 258 -4 * 207 0 0 0 chrX 28771451 28771474 -148202666 + (A)n Simple_repeat Simple_repeat 1 23 0 794 271 72 40 chrX 28771477 28771868 -148202272 + L2 LINE L2 2776 3184 -129 792 134 0 17 chrX 28771884 28772003 -148202137 + FLAM_C SINE Alu 1 117 -16 191 311 0 0 chrX 28772622 28772683 -148201457 - L3 LINE CR1 -824 753 693 197 65 32 0 chrX 28773584 28773615 -148200525 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1821 169 0 26 chrX 28774382 28774689 -148199451 - AluJb SINE Alu -13 299 1 1424 284 135 30 chrX 28774916 28775577 -148198563 - L3 LINE CR1 -5 1572 843 1822 130 60 3 chrX 28776128 28776413 -148197727 + AluJb SINE Alu 1 301 -11 384 348 39 17 chrX 28776767 28776948 -148197192 + L2 LINE L2 2934 3118 -154 180 311 0 0 chrX 28777028 28777073 -148197067 + L2 LINE L2 3223 3267 -5 689 130 30 46 chrX 28777432 28777563 -148196577 + FLAM_C SINE Alu 5 133 0 25 51 0 0 chrX 28777651 28777690 -148196450 + AT_rich Low_complexity Low_complexity 1 39 0 269 157 301 0 chrX 28781537 28781620 -148192520 - L1MC5 LINE L1 -49 7912 7805 1581 164 0 12 chrX 28781661 28781905 -148192235 + AluJb SINE Alu 58 298 -14 2207 95 0 10 chrX 28781940 28782234 -148191906 - AluSx SINE Alu -21 291 1 324 68 23 0 chrX 28782922 28782966 -148191174 - Alu SINE Alu -256 46 2 27 73 0 0 chrX 28783787 28783842 -148190298 + AT_rich Low_complexity Low_complexity 1 55 0 190 304 0 0 chrX 28784316 28784362 -148189778 - L3 LINE CR1 -95 1482 1437 973 196 6 0 chrX 28784726 28784905 -148189235 - AluJb SINE Alu -14 298 119 970 115 7 7 chrX 28785017 28785156 -148188984 - AluJb SINE Alu -173 139 1 263 202 26 149 chrX 28785286 28785347 -148188793 - MIR SINE MIR -115 147 105 2257 111 0 0 chrX 28785347 28785645 -148188495 + AluSg SINE Alu 1 298 -12 263 202 26 149 chrX 28785645 28785697 -148188443 - MIR SINE MIR -157 105 48 1728 235 78 25 chrX 28785706 28786297 -148187843 + L2 LINE L2 1543 2164 -1150 4335 157 87 13 chrX 28786338 28787097 -148187043 - MER21B LTR ERV1 -44 819 5 1688 99 0 0 chrX 28787141 28787362 -148186778 + AluSq SINE Alu 92 312 -1 13992 172 35 27 chrX 28787393 28790172 -148183968 - MER21B-int LTR ERV1 -42 4972 2779 2307 99 0 6 chrX 28790172 28790484 -148183656 - AluSx SINE Alu -2 310 1 13992 172 35 27 chrX 28790484 28791626 -148182514 - MER21B-int LTR ERV1 -2235 2779 1647 2759 170 135 26 chrX 28791695 28792308 -148181832 - MER21B LTR ERV1 0 863 184 4347 43 10 0 chrX 28792409 28792924 -148181216 + LTR10C LTR ERV1 71 590 -1 1490 138 36 28 chrX 28793001 28793254 -148180886 - MER21B-int LTR ERV1 -3932 259 5 2259 114 133 4 chrX 28793254 28793733 -148180407 + LTR35 LTR ERV1 1 618 0 5059 147 41 13 chrX 28793769 28794599 -148179541 - MER21B LTR ERV1 -7 856 4 6233 136 35 42 chrX 28794666 28795068 -148179072 - MER21B-int LTR ERV1 -42 4149 3746 2146 220 28 28 chrX 28795068 28795573 -148178567 - LTR10B LTR ERV1 0 505 1 6233 136 35 42 chrX 28795573 28796275 -148177865 - MER21B-int LTR ERV1 -445 3746 3053 * 7909 153 76 45 chrX 28796266 28796487 -148177653 - LTR8A-int LTR ERV1 -985 3206 2993 186 191 0 43 chrX 28796487 28796534 -148177606 + MER5A DNA MER1_type 16 60 -129 7909 153 76 45 chrX 28796534 28796784 -148177356 - LTR8A-int LTR ERV1 -1198 2993 2752 2234 113 0 7 chrX 28796784 28797086 -148177054 - AluSq SINE Alu -13 300 1 7909 153 76 45 chrX 28797086 28798079 -148176061 - LTR8A-int LTR ERV1 -1439 2752 1648 1331 214 36 52 chrX 28798122 28798509 -148175631 - LTR8A-int LTR ERV1 -2401 1790 1410 3167 204 58 57 chrX 28798624 28799502 -148174638 - LTR8A-int LTR ERV1 -2252 4506 3628 2732 155 66 29 chrX 28799503 28799595 -148174545 - LTR8A-int LTR ERV1 -3656 535 448 2871 166 109 51 chrX 28799595 28800282 -148173858 - LTR8A LTR ERV1 0 727 1 2732 155 66 29 chrX 28800282 28800625 -148173515 - LTR8A-int LTR ERV1 -3743 448 76 2804 190 28 49 chrX 28800625 28801273 -148172867 - LTR27 LTR ERV1 -1 635 2 2732 155 66 29 chrX 28801273 28801352 -148172788 - LTR8A-int LTR ERV1 -4115 76 1 4872 158 68 15 chrX 28801365 28802182 -148171958 - MER21B LTR ERV1 -2 861 1 459 0 0 0 chrX 28802614 28802665 -148171475 + (CA)n Simple_repeat Simple_repeat 2 52 0 528 329 69 0 chrX 28803041 28803257 -148170883 - MIR SINE MIR -27 235 5 464 249 60 38 chrX 28803397 28803582 -148170558 - L1MC4a LINE L1 -539 7269 7081 231 268 0 0 chrX 28804389 28804460 -148169680 - HAL1 LINE L1 -2 2505 2435 2203 75 0 0 chrX 28804607 28804874 -148169266 - AluSc SINE Alu -8 301 35 219 88 0 0 chrX 28805026 28805060 -148169080 + (TC)n Simple_repeat Simple_repeat 1 34 0 1307 203 112 61 chrX 28805183 28805666 -148168474 - MLT1H LTR MaLR 0 549 1 1012 173 0 0 chrX 28805929 28806085 -148168055 + FRAM SINE Alu 1 155 -21 1041 156 12 6 chrX 28806626 28806799 -148167341 - AluSq SINE Alu -139 174 1 24 0 0 0 chrX 28808284 28808308 -148165832 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chrX 28808604 28808627 -148165513 + AT_rich Low_complexity Low_complexity 1 23 0 831 173 0 8 chrX 28809011 28809144 -148164996 + AluJo/FLAM SINE Alu 2 133 -169 1575 157 149 0 chrX 28809147 28809409 -148164731 + AluJo SINE Alu 1 301 -1 24 67 0 0 chrX 28809957 28810002 -148164138 + AT_rich Low_complexity Low_complexity 1 45 0 289 258 11 32 chrX 28811498 28811591 -148162549 - MIR3 SINE MIR -6 202 112 26 0 0 0 chrX 28811815 28811841 -148162299 + AT_rich Low_complexity Low_complexity 1 26 0 278 203 14 40 chrX 28811976 28812050 -148162090 - MIR3 SINE MIR -134 74 3 13545 36 1 0 chrX 28812711 28815022 -148159118 - L1PA4 LINE L1 -3 6152 3841 28 29 0 0 chrX 28815149 28815184 -148158956 + AT_rich Low_complexity Low_complexity 1 35 0 290 143 0 0 chrX 28815937 28815986 -148158154 + Alu SINE Alu 252 300 -2 847 215 0 13 chrX 28816000 28816158 -148157982 - AluJb SINE Alu -21 291 136 660 83 0 10 chrX 28816154 28816250 -148157890 + AluJ/FRAM SINE Alu 218 312 0 * 1888 128 24 7 chrX 28816377 28816666 -148157474 + AluJo SINE Alu 1 294 -18 2551 87 0 0 chrX 28817434 28817744 -148156396 + AluSq SINE Alu 1 310 -3 228 135 0 0 chrX 28817905 28817942 -148156198 + (A)n Simple_repeat Simple_repeat 1 37 0 1201 162 5 25 chrX 28818387 28818591 -148155549 - MER3 DNA MER1_type -8 201 2 2054 144 3 10 chrX 28819569 28819881 -148154259 + AluJb SINE Alu 1 310 -2 22 0 0 0 chrX 28820012 28820034 -148154106 + AT_rich Low_complexity Low_complexity 1 22 0 2260 88 20 3 chrX 28820572 28820866 -148153274 - AluSx SINE Alu -13 299 1 987 192 10 30 chrX 28820988 28821191 -148152949 - MER3 DNA MER1_type 0 209 11 228 284 95 95 chrX 28821622 28821711 -148152429 - MIR SINE MIR -22 240 149 2481 73 0 3 chrX 28821711 28822014 -148152126 - AluSp SINE Alu -11 302 1 228 284 95 95 chrX 28822014 28822072 -148152068 - MIR SINE MIR -112 150 93 1742 139 12 0 chrX 28822072 28822323 -148151817 + L1PB3 LINE L1 5900 6153 -1 574 195 195 37 chrX 28822503 28822775 -148151365 - L1ME4a LINE L1 -13 6108 5794 24 53 0 0 chrX 28822949 28822987 -148151153 + AT_rich Low_complexity Low_complexity 1 38 0 2048 89 6 80 chrX 28823631 28823955 -148150185 + AluSx SINE Alu 1 300 -12 786 184 11 87 chrX 28824079 28824247 -148149893 + FRAM SINE Alu 1 24 -152 2506 59 0 3 chrX 28824247 28824550 -148149590 + AluY SINE Alu 1 302 -9 786 184 11 87 chrX 28824550 28824566 -148149574 + FRAM SINE Alu 24 40 0 353 39 0 20 chrX 28824752 28824803 -148149337 + AluSc SINE Alu 248 297 -2 724 97 133 0 chrX 28825327 28825440 -148148700 + L1MA3 LINE L1 6173 6300 -5 1734 182 3 7 chrX 28825973 28826269 -148147871 + AluJo SINE Alu 1 295 -17 2145 97 44 7 chrX 28826271 28826569 -148147571 + AluSx SINE Alu 1 309 -3 2060 125 0 42 chrX 28826789 28827102 -148147038 + AluSx SINE Alu 1 300 -12 1385 132 14 0 chrX 28828040 28828253 -148145887 + L1MD2 LINE L1 6143 6358 -1 1479 193 178 54 chrX 28828375 28828886 -148145254 - MLT1F1 LTR MaLR 0 567 2 271 257 0 14 chrX 28829408 28829482 -148144658 + L1ME1 LINE L1 5976 6048 -118 408 139 15 0 chrX 28830006 28830080 -148144060 + L1ME2 LINE L1 6089 6166 0 323 276 91 55 chrX 28830098 28830297 -148143843 + L1MC4 LINE L1 7836 8041 -1 804 154 31 23 chrX 28830645 28830775 -148143365 + FLAM_C SINE Alu 1 131 -2 2352 65 0 14 chrX 28830964 28831256 -148142884 + AluY SINE Alu 17 304 -7 354 284 93 54 chrX 28831333 28831474 -148142666 + MIR SINE MIR 1 154 -108 1813 144 10 23 chrX 28831474 28831773 -148142367 + AluJo SINE Alu 1 295 -17 354 284 93 54 chrX 28831773 28831835 -148142305 + MIR SINE MIR 154 212 -50 1754 190 24 0 chrX 29033889 29034221 -147939919 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 29034473 29034719 -147939421 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 29034758 29035147 -147938993 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 29035162 29035324 -147938816 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 29035324 29035626 -147938514 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 29035626 29035942 -147938198 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 29037197 29037254 -147936886 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 29037431 29037525 -147936615 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 29038138 29038223 -147935917 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 29038521 29038593 -147935547 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 29038780 29039261 -147934879 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 29039582 29039603 -147934537 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 29039928 29039975 -147934165 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 29040986 29041437 -147932703 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 29041684 29041783 -147932357 + MIR SINE MIR 83 178 -84 23 33 0 0 chrX 29042799 29042829 -147931311 + AT_rich Low_complexity Low_complexity 1 30 0 492 48 0 0 chrX 29042850 29042913 -147931227 + (TTCC)n Simple_repeat Simple_repeat 4 66 0 332 293 75 10 chrX 29043167 29043295 -147930845 - MIR SINE MIR -45 163 25 380 333 97 0 chrX 29043983 29044148 -147929992 + MIR SINE MIR 46 226 -36 2681 98 25 3 chrX 29046481 29046848 -147927292 - THE1C LTR MaLR 0 375 1 3984 90 7 7 chrX 29046851 29047419 -147926721 - THE1C-int LTR MaLR -3 1577 1010 11358 196 13 4 chrX 29047427 29050574 -147923566 - L1P5 LINE L1 -382 6485 3309 * 40859 47 7 0 chrX 29050564 29056679 -147917461 - L1PA4 LINE L1 -1 6154 1 5448 168 58 19 chrX 29056683 29058132 -147916008 - L1P5 LINE L1 -3543 3319 1813 3618 222 204 8 chrX 29058116 29059440 -147914700 - L1P5 LINE L1 -5275 1588 6 * 2031 93 25 140 chrX 29059462 29059911 -147914229 - THE1C-int LTR MaLR -1183 397 1 2218 87 34 48 chrX 29059912 29060291 -147913849 - THE1C LTR MaLR -1 374 1 351 0 0 0 chrX 29060629 29060668 -147913472 + (CA)n Simple_repeat Simple_repeat 2 40 0 552 254 134 17 chrX 29062264 29062496 -147911644 + L1MC4a LINE L1 5574 5832 -1976 1404 280 72 18 chrX 29063139 29063596 -147910544 + LTR16C LTR ERVL 8 489 -2 316 111 16 32 chrX 29063694 29063757 -147910383 - LTR33A LTR ERVL -20 503 442 905 211 6 0 chrX 29063766 29063937 -147910203 - MLT1D LTR MaLR 0 505 334 2920 269 57 48 chrX 29063948 29065299 -147908841 - L1M4 LINE L1 -5179 1363 1 2376 297 46 57 chrX 29065583 29066880 -147907260 - ERVL LTR ERVL -385 5379 4097 1882 169 3 0 chrX 29067096 29067392 -147906748 + AluJb SINE Alu 1 297 -15 425 226 70 26 chrX 29067456 29067571 -147906569 - MIR SINE MIR -11 251 132 2338 132 34 50 chrX 29067781 29068219 -147905921 - Tigger2a DNA MER2_type 0 434 4 432 352 97 5 chrX 29068265 29068481 -147905659 + MIR SINE MIR 20 255 -7 712 98 0 0 chrX 29069702 29069804 -147904336 + FRAM SINE Alu 74 175 -1 1195 171 60 32 chrX 29070600 29070881 -147903259 - MLT1B LTR MaLR -101 289 1 358 226 0 43 chrX 29070893 29070986 -147903154 - MIR SINE MIR -55 207 119 2214 216 40 12 chrX 29071600 29072221 -147901919 - L1MD2 LINE L1 0 6242 5620 685 289 44 4 chrX 29072222 29072668 -147901472 - L1MDb LINE L1 -5860 549 7 255 322 84 42 chrX 29073343 29073486 -147900654 - MIR SINE MIR -94 168 20 222 400 35 9 chrX 29073492 29073607 -147900533 - L2 LINE L2 -19 3253 3136 362 292 10 10 chrX 29074185 29074281 -147899859 + MIR SINE MIR 38 133 -75 1176 216 100 43 chrX 29074293 29074498 -147899642 - MLT1D LTR MaLR -113 392 200 2431 80 3 0 chrX 29074498 29074797 -147899343 + AluSp SINE Alu 1 300 -13 1176 216 100 43 chrX 29074797 29074962 -147899178 - MLT1D LTR MaLR -305 200 1 703 273 115 18 chrX 29074962 29075240 -147898900 + MER69 DNA AcHobo 278 582 -1944 * 1399 198 136 9 chrX 29075225 29075675 -147898465 + MER69 DNA AcHobo 2010 2516 -10 2589 118 12 16 chrX 29077416 29077840 -147896300 - MER39 LTR ERV1 0 707 286 792 164 22 20 chrX 29077841 29078104 -147896036 - LTR32 LTR ERVL 0 471 152 277 195 115 23 chrX 29078813 29078900 -147895240 - MIR SINE MIR -19 243 149 987 243 67 80 chrX 29079143 29079669 -147894471 - LTR33 LTR ERVL 0 521 3 342 189 31 1 chrX 29079930 29080018 -147894122 - MLT1H LTR MaLR -11 531 453 583 262 73 31 chrX 29080094 29080362 -147893778 - MLT1H LTR MaLR -216 333 14 270 0 0 0 chrX 29080790 29080820 -147893320 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 291 28 0 0 chrX 29080819 29080855 -147893285 + (TA)n Simple_repeat Simple_repeat 1 36 0 194 250 0 91 chrX 29081872 29081960 -147892180 - L2 LINE L2 -5 3308 3229 * 214 331 45 11 chrX 29081941 29082057 -147892083 - MIR SINE MIR -71 137 10 299 256 42 3 chrX 29082098 29082210 -147891930 - MIR SINE MIR -63 145 37 279 93 0 0 chrX 29082536 29082579 -147891561 + (GA)n Simple_repeat Simple_repeat 1 43 0 284 254 109 45 chrX 29083236 29083346 -147890794 + MLT1J LTR MaLR 256 372 -139 207 0 0 0 chrX 29083946 29083969 -147890171 + (A)n Simple_repeat Simple_repeat 1 23 0 393 326 34 0 chrX 29084070 29084217 -147889923 - L3 LINE CR1 -10 1567 1416 308 186 114 0 chrX 29084670 29084740 -147889400 + L2 LINE L2 3236 3313 0 505 256 169 5 chrX 29084863 29085166 -147888974 - LTR33 LTR ERVL -12 509 110 1226 334 55 28 chrX 29085247 29085864 -147888276 - L3 LINE CR1 -344 1233 600 342 226 21 21 chrX 29085963 29086056 -147888084 + MER103 DNA DNA 1 93 -73 601 275 65 44 chrX 29086198 29086427 -147887713 + MIR SINE MIR 29 262 0 313 291 27 18 chrX 29086614 29086724 -147887416 + L1ME LINE L1 5276 5386 -760 545 303 6 12 chrX 29086840 29087002 -147887138 - MIR SINE MIR -1 261 101 313 235 15 0 chrX 29087016 29087084 -147887056 + L1ME LINE L1 5557 5625 -496 1306 277 73 15 chrX 29087100 29087511 -147886629 + LTR16A LTR ERVL 16 450 0 238 241 37 0 chrX 29087579 29087633 -147886507 + MLT1J2 LTR MaLR 254 309 -141 639 263 67 50 chrX 29087654 29088012 -147886128 + L1MCc LINE L1 21 384 -6039 1726 243 60 19 chrX 29088137 29089085 -147885055 + L1MCc LINE L1 814 1910 -4851 832 261 70 7 chrX 29089098 29089385 -147884755 - MLT1D LTR MaLR -2 503 199 1214 256 46 46 chrX 29089394 29089925 -147884215 + L1MCc LINE L1 2658 3188 -3753 2378 92 0 13 chrX 29089925 29090240 -147883900 + AluSq SINE Alu 1 311 -2 1214 256 46 46 chrX 29090240 29090313 -147883827 + L1MCc LINE L1 3188 3260 -3681 1996 172 42 3 chrX 29090313 29090668 -147883472 + MER93b LTR ERV1 5 373 0 1214 256 46 46 chrX 29090668 29090778 -147883362 + L1MCc LINE L1 3260 3336 -3605 541 250 73 0 chrX 29090951 29091115 -147883025 + L1MD3 LINE L1 7009 7184 -811 603 240 0 0 chrX 29091130 29091255 -147882885 + MLT1F1 LTR MaLR 1 125 -442 3076 173 39 2 chrX 29091256 29091817 -147882323 + L1MD3 LINE L1 7400 7981 -14 2072 93 23 33 chrX 29091819 29092119 -147882021 - AluY SINE Alu -14 297 1 315 250 42 10 chrX 29092157 29092253 -147881887 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 29092435 29092476 -147881664 + AT_rich Low_complexity Low_complexity 1 41 0 255 259 9 103 chrX 29092579 29092695 -147881445 - MER102a DNA MER1_type -6 324 220 22 0 0 0 chrX 29093121 29093143 -147880997 + AT_rich Low_complexity Low_complexity 1 22 0 272 289 58 10 chrX 29093190 29093294 -147880846 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 29093484 29093505 -147880635 + AT_rich Low_complexity Low_complexity 1 21 0 505 291 111 49 chrX 29093558 29093802 -147880338 - MIR SINE MIR -2 260 2 909 252 29 0 chrX 29094678 29094888 -147879252 + MIR SINE MIR 43 258 -4 1885 146 7 3 chrX 29095161 29095449 -147878691 + AluJb SINE Alu 1 289 -23 231 308 0 26 chrX 29095526 29095604 -147878536 - L2 LINE L2 -61 3252 3177 549 268 252 4 chrX 29095612 29095866 -147878274 + L2 LINE L2 2827 3143 -170 3624 259 40 14 chrX 29095893 29096862 -147877278 - L2 LINE L2 -508 2806 1813 1151 281 97 21 chrX 29096862 29097297 -147876843 - L2 LINE L2 -2846 468 1 787 167 0 8 chrX 29097657 29097783 -147876357 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 29098509 29098539 -147875601 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1334 235 55 48 chrX 29098830 29099264 -147874876 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 29100595 29100653 -147873487 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 29101999 29102027 -147872113 + (T)n Simple_repeat Simple_repeat 1 28 0 1304 306 47 10 chrX 29102707 29103112 -147871028 + LTR16C LTR ERVL 71 490 -1 615 252 96 28 chrX 29103503 29103798 -147870342 + LTR33 LTR ERVL 173 521 0 372 277 6 77 chrX 29103798 29103976 -147870164 + MIR SINE MIR 25 189 -73 1205 176 0 0 chrX 29104391 29104579 -147869561 + MER5A DNA MER1_type 2 189 0 1312 228 42 9 chrX 29104751 29105189 -147868951 - MLT1E LTR MaLR 0 593 46 1319 227 50 34 chrX 29105351 29105786 -147868354 - MLT1-int LTR MaLR -766 605 37 402 355 35 12 chrX 29106304 29106476 -147867664 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 29106678 29106744 -147867396 + CT-rich Low_complexity Low_complexity 3 69 0 1852 200 42 97 chrX 29107511 29108115 -147866025 - L1ME1 LINE L1 -7 6159 5592 4868 104 5 36 chrX 29108115 29108868 -147865272 + L1PB3 LINE L1 5420 6149 -5 1852 200 42 97 chrX 29108868 29108924 -147865216 - L1ME1 LINE L1 -574 5592 5535 346 273 34 0 chrX 29108927 29109015 -147865125 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 29109035 29109072 -147865068 + (GA)n Simple_repeat Simple_repeat 2 39 0 1644 156 0 56 chrX 29109098 29109386 -147864754 - AluJo SINE Alu -40 272 1 393 193 31 76 chrX 29109388 29109549 -147864591 - L1ME1 LINE L1 -682 5484 5336 * 993 197 76 90 chrX 29109528 29109974 -147864166 - L1ME1 LINE L1 -2539 3607 3168 267 329 24 0 chrX 29110102 29110184 -147863956 + LTR16C LTR ERVL 408 491 0 240 318 111 40 chrX 29110311 29110437 -147863703 + L2 LINE L2 3138 3272 0 1255 172 152 0 chrX 29110554 29110832 -147863308 + AluJb SINE Alu 3 317 0 833 136 0 0 chrX 29111046 29111164 -147862976 + FLAM_C SINE Alu 1 118 -15 24 32 0 0 chrX 29111164 29111195 -147862945 + AT_rich Low_complexity Low_complexity 1 31 0 745 261 40 13 chrX 29111479 29111705 -147862435 + MIR SINE MIR 3 234 -28 1425 162 99 51 chrX 29112178 29112533 -147861607 - MLT1A1 LTR MaLR 0 396 1 231 114 0 0 chrX 29114072 29114107 -147860033 + (TG)n Simple_repeat Simple_repeat 2 36 0 411 310 37 21 chrX 29114109 29114296 -147859844 + MIR SINE MIR 11 200 -62 706 340 49 4 chrX 29114296 29114543 -147859597 - MIR SINE MIR -3 259 2 998 186 5 26 chrX 29114929 29115122 -147859018 - MER5A DNA MER1_type 0 189 1 715 214 77 6 chrX 29115132 29115300 -147858840 - MER58A DNA MER1_type -1 223 44 327 333 108 22 chrX 29115357 29115672 -147858468 - L2 LINE L2 -1175 2139 1798 1001 244 56 30 chrX 29115709 29115975 -147858165 + MLT1H1 LTR MaLR 1 273 -282 1033 135 36 26 chrX 29115976 29116168 -147857972 - THE1C LTR MaLR -2 373 180 864 293 95 8 chrX 29118893 29119262 -147854878 + MLT1I LTR MaLR 1 401 -8 385 312 89 49 chrX 29119684 29120212 -147853928 + L1ME4a LINE L1 4416 4961 -1185 336 294 68 25 chrX 29120475 29120638 -147853502 + L1ME4a LINE L1 5303 5472 -2336 392 206 6 120 chrX 29120768 29120943 -147853197 + L1ME4a LINE L1 5967 6121 0 431 326 87 26 chrX 29121432 29122048 -147852092 - L1ME2 LINE L1 -258 5975 5327 2029 247 138 25 chrX 29122442 29122964 -147851176 - MLT1G LTR MaLR 0 590 10 1816 248 48 13 chrX 29123680 29124221 -147849919 - L1ME2 LINE L1 -2332 3883 3324 6928 245 37 39 chrX 29124224 29124648 -147849492 - L1ME2 LINE L1 -2944 3271 2848 2812 10 0 0 chrX 29124648 29124954 -147849186 - AluYa5 SINE Alu -5 306 1 6928 245 37 39 chrX 29124954 29125261 -147848879 - L1ME2 LINE L1 -3367 2848 2542 2101 112 0 14 chrX 29125261 29125576 -147848564 + AluSx SINE Alu 1 311 0 6928 245 37 39 chrX 29125576 29127397 -147846743 - L1ME2 LINE L1 -3673 2542 768 2871 70 8 3 chrX 29127397 29127780 -147846360 - L1PA13 LINE L1 -11 6152 5768 6928 245 37 39 chrX 29127780 29128511 -147845629 - L1ME2 LINE L1 -5447 768 37 1657 184 93 37 chrX 29128946 29129321 -147844819 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 29130357 29130414 -147843726 + AT_rich Low_complexity Low_complexity 1 57 0 647 292 74 20 chrX 29130504 29130894 -147843246 - L1ME4a LINE L1 -175 5946 5536 17585 44 1 0 chrX 29131820 29134758 -147839382 + L1PA5 LINE L1 3210 6150 -4 956 261 109 40 chrX 29134758 29135087 -147839053 + MLT1H LTR MaLR 91 442 -107 21 36 0 0 chrX 29136262 29136290 -147837850 + AT_rich Low_complexity Low_complexity 1 28 0 450 113 56 0 chrX 29136349 29136420 -147837720 - Charlie3 DNA MER1_type -9 2701 2627 734 291 205 25 chrX 29136522 29136917 -147837223 + L2 LINE L2 2848 3313 0 297 109 0 0 chrX 29136936 29136982 -147837158 + (TG)n Simple_repeat Simple_repeat 1 46 0 1580 155 15 4 chrX 29137130 29137394 -147836746 - AluJo SINE Alu -3 309 43 320 332 38 38 chrX 29138804 29138986 -147835154 - MIR SINE MIR -50 212 33 818 220 28 0 chrX 29138996 29139178 -147834962 + MER5A DNA MER1_type 1 187 -2 216 214 0 0 chrX 29139349 29139391 -147834749 + A-rich Low_complexity Low_complexity 1 42 0 2353 224 35 26 chrX 29140017 29140739 -147833401 + L1M4 LINE L1 3881 4608 -1538 210 302 0 0 chrX 29140790 29140853 -147833287 + MIR SINE MIR 200 262 0 1486 275 80 43 chrX 29141161 29142426 -147831714 + L1ME LINE L1 51 1333 -4747 14790 161 85 7 chrX 29142435 29146581 -147827559 + L1PBa LINE L1 1 4470 -2392 348 24 0 0 chrX 29146587 29146628 -147827512 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 92 0 5 chrX 29146628 29146993 -147827147 + L1PB1 LINE L1 5788 6150 -1 280 254 0 0 chrX 29147073 29147140 -147827000 + L1ME LINE L1 1386 1452 -4809 230 261 58 35 chrX 29147169 29147395 -147826745 - L1M4 LINE L1 -820 5326 5096 765 181 112 32 chrX 29147565 29147753 -147826387 + L1MD2 LINE L1 6146 6348 -11 314 286 68 15 chrX 29147779 29147912 -147826228 + MARNA DNA Mariner 370 509 -77 414 257 125 13 chrX 29148010 29148162 -147825978 - MIR SINE MIR -39 223 55 960 201 211 27 chrX 29148646 29149133 -147825007 - Charlie2 DNA MER1_type -4 2858 2282 4797 89 9 12 chrX 29149139 29149804 -147824336 - L1PA10 LINE L1 -116 6052 5390 1311 243 51 9 chrX 29149804 29150232 -147823908 - Charlie2 DNA MER1_type -564 2298 1853 698 233 54 66 chrX 29150220 29150478 -147823662 - Charlie2 DNA MER1_type -2452 330 76 * 723 290 0 11 chrX 29150596 29150779 -147823361 + MIR SINE MIR 41 221 -41 5034 206 31 11 chrX 29151289 29152301 -147821839 - MER45B DNA AcHobo -8 1032 1 503 285 29 0 chrX 29152577 29152714 -147821426 + LTR16A LTR ERVL 96 236 -214 470 146 19 39 chrX 29152747 29152850 -147821290 - MER53 DNA DNA -88 101 1 380 276 16 0 chrX 29152850 29152961 -147821179 + LTR16A LTR ERVL 242 354 -96 239 221 12 0 chrX 29153239 29153325 -147820815 + (TA)n Simple_repeat Simple_repeat 2 88 0 621 323 26 18 chrX 29153525 29153754 -147820386 + MIR SINE MIR 2 232 -30 28 29 0 0 chrX 29153754 29153789 -147820351 + AT_rich Low_complexity Low_complexity 1 35 0 209 293 4 21 chrX 29154649 29154729 -147819411 - MER5A DNA MER1_type -98 91 2 183 80 0 0 chrX 29155051 29155076 -147819064 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 235 357 0 0 chrX 29155078 29155134 -147819006 - L2 LINE L2 -12 3260 3205 528 287 89 25 chrX 29155737 29155939 -147818201 - MIR SINE MIR 0 262 48 395 270 66 66 chrX 29156998 29157135 -147817005 + L2 LINE L2 3136 3272 0 1402 298 95 4 chrX 29157362 29157836 -147816304 + MER69 DNA AcHobo 2 518 -708 * 1431 206 64 0 chrX 29157831 29158175 -147815965 + MER69 DNA AcHobo 2161 2526 0 2700 39 0 0 chrX 29158491 29158801 -147815339 - AluY SINE Alu -1 310 1 1478 272 79 10 chrX 29159240 29159721 -147814419 + LTR33 LTR ERVL 1 514 -7 411 254 65 53 chrX 29160616 29160785 -147813355 + HAL1 LINE L1 1014 1184 -1323 5927 175 26 2 chrX 29160844 29162880 -147811260 - L1PA16 LINE L1 -9 6157 4074 279 0 0 0 chrX 29162921 29162952 -147811188 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43179 47 6 6 chrX 29162955 29169112 -147805028 - L1PA3 LINE L1 -3 6152 1 2958 218 51 19 chrX 29169109 29169860 -147804280 - L1PA16 LINE L1 -2058 4088 3314 * 243 358 24 41 chrX 29170241 29170364 -147803776 - L2 LINE L2 0 3272 3152 375 105 0 0 chrX 29170725 29170782 -147803358 + (TC)n Simple_repeat Simple_repeat 2 58 0 261 0 0 0 chrX 29170782 29170811 -147803329 + (CA)n Simple_repeat Simple_repeat 1 29 0 2053 215 40 7 chrX 29172136 29172731 -147801409 - L1MD2 LINE L1 -1 6358 5695 4760 209 114 30 chrX 29172741 29174054 -147800086 - L1MDa LINE L1 -4666 1874 117 2461 89 0 3 chrX 29174054 29174368 -147799772 - AluSq SINE Alu 0 313 1 4760 209 114 30 chrX 29174368 29174476 -147799664 - L1MDa LINE L1 -6423 117 19 192 77 0 0 chrX 29175156 29175182 -147798958 + (A)n Simple_repeat Simple_repeat 1 26 0 659 243 45 28 chrX 29175284 29175461 -147798679 - MER5A DNA MER1_type -1 188 9 264 111 0 0 chrX 29177305 29177350 -147796790 + (GA)n Simple_repeat Simple_repeat 1 45 0 2011 235 122 7 chrX 29177790 29178378 -147795762 + L1ME3 LINE L1 5507 6162 0 182 37 37 0 chrX 29178636 29178663 -147795477 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 29178712 29178747 -147795393 + AT_rich Low_complexity Low_complexity 1 35 0 281 302 19 38 chrX 29179843 29179949 -147794191 - L2 LINE L2 -914 2400 2297 5168 215 54 27 chrX 29179992 29181251 -147792889 + L1M4 LINE L1 1 1293 -5249 306 258 0 0 chrX 29181353 29181419 -147792721 - MLT1-int LTR MaLR -635 736 671 * 7368 228 30 9 chrX 29181394 29183416 -147790724 + L1M4 LINE L1 2713 4776 -1868 2472 70 3 0 chrX 29383791 29384091 -147590049 + AluSp SINE Alu 1 301 -12 315 299 47 47 chrX 29384425 29384639 -147589501 - L2 LINE L2 -1 3312 3099 384 331 174 32 chrX 29384696 29385104 -147589036 - L2 LINE L2 -342 2972 2507 416 312 29 6 chrX 29385120 29385290 -147588850 - L2 LINE L2 -944 2370 2197 258 224 35 0 chrX 29385412 29385470 -147588670 + MIR SINE MIR 82 141 -121 1675 224 86 24 chrX 29385490 29385898 -147588242 - LTR33 LTR ERVL 0 521 77 3217 140 88 2 chrX 29385898 29386412 -147587728 + LTR64 LTR ERVK 1 558 0 1675 224 86 24 chrX 29386412 29386494 -147587646 - LTR33 LTR ERVL -444 77 1 257 320 13 0 chrX 29386500 29386575 -147587565 + MIR SINE MIR 177 252 -10 216 0 0 0 chrX 29386616 29386640 -147587500 + (TA)n Simple_repeat Simple_repeat 2 25 0 1019 315 26 22 chrX 29386662 29387116 -147587024 - L1ME LINE L1 -338 5783 5328 8019 27 2 0 chrX 29387259 29388241 -147585899 + L1PA4 LINE L1 5188 6171 0 2313 110 0 0 chrX 29388374 29388674 -147585466 - AluSx SINE Alu -12 300 1 330 306 90 90 chrX 29388679 29389146 -147584994 - L1ME LINE L1 -1120 5026 4560 363 283 35 112 chrX 29389200 29389486 -147584654 - HAL1b LINE L1 -985 363 100 1446 216 101 78 chrX 29389774 29390149 -147583991 + L1MC4a LINE L1 5518 5914 -1894 2372 81 3 0 chrX 29390149 29390445 -147583695 + AluSp SINE Alu 1 297 -16 1446 216 101 78 chrX 29390445 29390661 -147583479 + L1MC4a LINE L1 5914 6123 -1685 2288 255 72 43 chrX 29391161 29391621 -147582519 + L1MC4 LINE L1 6971 7416 -626 2481 71 3 0 chrX 29391621 29391918 -147582222 + AluSp SINE Alu 1 298 -15 2288 255 72 43 chrX 29391918 29392272 -147581868 + L1MC4 LINE L1 7416 7758 -284 1305 393 3 13 chrX 29392272 29392572 -147581568 - AluSx SINE Alu -15 297 1 2288 255 72 43 chrX 29392572 29392672 -147581468 + L1MC4 LINE L1 7758 7854 -188 2239 118 0 3 chrX 29392672 29392977 -147581163 + AluSp SINE Alu 1 304 -9 2288 255 72 43 chrX 29392977 29393087 -147581053 + L1MC4 LINE L1 7854 8027 -15 270 307 35 9 chrX 29393117 29393231 -147580909 + HAL1 LINE L1 1557 1673 -834 248 350 86 0 chrX 29393473 29393590 -147580550 - LTR16A LTR ERVL -323 127 1 1019 193 78 46 chrX 29393595 29393813 -147580327 + MER45B DNA AcHobo 1 225 -815 750 177 0 31 chrX 29393839 29393969 -147580171 - FLAM_A SINE Alu -7 126 1 405 182 0 0 chrX 29393980 29394046 -147580094 + MER45B DNA AcHobo 975 1040 0 923 216 131 5 chrX 29394322 29394544 -147579596 + MLT1J LTR MaLR 1 250 -261 393 185 65 0 chrX 29394615 29394707 -147579433 + MLT1J LTR MaLR 414 511 0 1301 256 82 54 chrX 29396134 29396637 -147577503 + LTR33 LTR ERVL 2 518 -3 2312 79 0 30 chrX 29396747 29397052 -147577088 + AluSx SINE Alu 1 296 -16 881 194 59 11 chrX 29397728 29397914 -147576226 + Charlie4 DNA MER1_type 1 195 -1766 * 2149 105 0 41 chrX 29397912 29398127 -147576013 + MER84 LTR ERVI 206 405 -102 2148 124 0 0 chrX 29398127 29398426 -147575714 + AluSx SINE Alu 5 303 -9 2149 105 0 41 chrX 29398426 29398525 -147575615 + MER84 LTR ERVI 405 507 0 16972 87 24 8 chrX 29398525 29400768 -147573372 + MER84-int LTR ERV1 1 2280 -2674 10562 106 26 8 chrX 29400764 29402242 -147571898 + MER84-int LTR ERV1 3451 4954 0 * 3859 107 4 4 chrX 29402242 29402749 -147571391 + MER84 LTR ERV1 1 507 0 2588 148 138 16 chrX 29402751 29403251 -147570889 - LTR48 LTR ERV1 -226 561 1 982 221 147 81 chrX 29403268 29403798 -147570342 + MER34B LTR ERV1 1 565 0 385 156 0 0 chrX 29404014 29404078 -147570062 + L1MC4a LINE L1 7626 7689 -119 2320 100 3 0 chrX 29405130 29405430 -147568710 - AluSq SINE Alu -12 301 1 3848 122 61 42 chrX 29405504 29406145 -147567995 + MER39B LTR ERV1 1 653 0 2179 92 55 0 chrX 29406341 29406633 -147567507 - AluSg SINE Alu -2 308 1 2638 218 10 58 chrX 29406651 29407132 -147567008 - L1ME1 LINE L1 -5 6161 5722 2267 107 3 0 chrX 29407132 29407431 -147566709 + AluSx SINE Alu 1 300 -12 2638 218 10 58 chrX 29407431 29407645 -147566495 - L1ME1 LINE L1 -444 5722 5499 549 297 97 35 chrX 29408901 29409365 -147564775 - L1ME4a LINE L1 -236 5885 5393 718 284 70 87 chrX 29409794 29410239 -147563901 - LTR16A LTR ERVL -13 437 1 811 220 104 33 chrX 29411546 29411787 -147562353 - L1ME3A LINE L1 -2 6168 5911 480 285 106 0 chrX 29411905 29412028 -147562112 - L2 LINE L2 -1 3271 3136 614 141 0 10 chrX 29412041 29412140 -147562000 + MER4A LTR ERV1 1 98 -566 1352 102 194 98 chrX 29412140 29412455 -147561685 + MER4A LTR ERV1 261 605 -59 201 340 0 0 chrX 29412619 29412722 -147561418 + (CCCCAG)n Simple_repeat Simple_repeat 4 106 0 516 269 65 32 chrX 29414157 29414343 -147559797 - MIR SINE MIR -7 255 64 321 26 0 0 chrX 29414601 29414639 -147559501 + (TG)n Simple_repeat Simple_repeat 1 38 0 351 199 0 37 chrX 29414648 29414809 -147559331 + (TA)n Simple_repeat Simple_repeat 2 156 0 216 67 0 0 chrX 29415493 29415523 -147558617 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 29415931 29416057 -147558083 + MER69 DNA AcHobo 2400 2523 -3 1559 131 67 29 chrX 29417032 29417455 -147556685 + LTR48-int LTR ERV1 150 686 -5912 189 0 0 0 chrX 29417536 29417557 -147556583 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1474 226 39 7 chrX 29417605 29417910 -147556230 + LTR48-int LTR ERV1 1854 2168 -4163 6032 106 72 23 chrX 29417971 29418307 -147555833 + LTR48-int LTR ERV1 198 516 -6242 2506 63 7 0 chrX 29418307 29418608 -147555532 + AluY SINE Alu 1 303 -8 6032 106 72 23 chrX 29418608 29418716 -147555424 + LTR48-int LTR ERV1 516 617 -6141 2512 112 77 26 chrX 29418716 29419144 -147554996 - LTR7 LTR ERV1 0 450 1 6032 106 72 23 chrX 29419144 29419614 -147554526 + LTR48-int LTR ERV1 617 1158 -5600 4564 86 53 9 chrX 29419636 29420337 -147553803 + LTR48-int LTR ERV1 1764 2495 -4103 1420 146 75 0 chrX 29420337 29420576 -147553564 - LTR8 LTR ERV1 -434 257 1 3975 127 119 39 chrX 29420576 29420799 -147553341 + LTR48-int LTR ERV1 2737 2941 -3657 2462 39 0 0 chrX 29420799 29421142 -147552998 - AluY SINE Alu 0 343 1 3975 127 119 39 chrX 29421142 29421791 -147552349 + LTR48-int LTR ERV1 2941 3681 -2917 * 7164 94 43 32 chrX 29421790 29422918 -147551222 + LTR48-int LTR ERV1 3837 4977 -1621 1736 90 35 4 chrX 29422896 29423151 -147550989 + LTR48-int LTR ERV1 4502 4764 -251 * 718 155 11 33 chrX 29423161 29423342 -147550798 + GA-rich Low_complexity Low_complexity 3 179 0 3241 188 85 3 chrX 29423344 29424005 -147550135 + LTR48 LTR ERV1 62 776 -11 1013 128 0 6 chrX 29424116 29424272 -147549868 + MER41A LTR ERV1 400 554 0 2565 47 0 0 chrX 29424348 29424644 -147549496 - AluY SINE Alu -15 296 1 419 327 165 26 chrX 29425077 29425658 -147548482 + L2 LINE L2 1710 2371 -943 3114 137 74 2 chrX 29425658 29426171 -147547969 + MER34B LTR ERV1 16 565 0 502 264 7 14 chrX 29426387 29426535 -147547605 + L2 LINE L2 3167 3313 0 17470 158 26 22 chrX 29426918 29429113 -147545027 + L1M1 LINE L1 25 2238 -5327 2438 85 0 0 chrX 29429113 29429418 -147544722 + AluSg SINE Alu 1 305 -5 17470 158 26 22 chrX 29429418 29430179 -147543961 + L1M1 LINE L1 2238 2994 -4571 261 143 143 0 chrX 29430308 29430357 -147543783 - MER58 DNA MER1_type -284 57 2 186 321 104 52 chrX 29430481 29430615 -147543525 - MIR SINE MIR -102 160 20 194 265 44 73 chrX 29430654 29430722 -147543418 - MIR SINE MIR -76 132 67 261 281 83 0 chrX 29431067 29431163 -147542977 + MLT1H1 LTR MaLR 439 542 -13 4457 182 76 55 chrX 29431268 29432267 -147541873 + LTR28 LTR ERV1 1 1020 0 1758 190 23 0 chrX 29434992 29435297 -147538843 + AluJo SINE Alu 1 312 0 1973 133 39 0 chrX 29435337 29435616 -147538524 + AluSx SINE Alu 1 290 -22 232 194 14 56 chrX 29436530 29436602 -147537538 + L1ME4a LINE L1 5959 6027 -94 821 278 44 7 chrX 29436624 29436897 -147537243 + LTR16C LTR ERVL 1 283 -208 508 260 158 15 chrX 29436897 29437093 -147537047 - MER58A DNA MER1_type 0 224 1 * 584 282 47 33 chrX 29437093 29437304 -147536836 + LTR16C LTR ERVL 276 489 -2 2439 72 3 34 chrX 29437859 29438180 -147535960 - AluSp SINE Alu -2 311 1 501 228 25 56 chrX 29438239 29438436 -147535704 + L1ME3A LINE L1 5965 6155 -15 582 277 38 107 chrX 29438476 29439036 -147535104 - MER34 LTR ERV1 0 542 22 1396 73 5 55 chrX 29439607 29439755 -147534385 - L1MA2 LINE L1 -9 6295 6160 2073 107 45 3 chrX 29439755 29440045 -147534095 - AluSx SINE Alu -10 302 1 1396 73 5 55 chrX 29440045 29440116 -147534024 - L1MA2 LINE L1 -144 6160 6087 310 275 36 28 chrX 29440670 29440874 -147533266 - HERV3 LTR ERV1 -2935 5112 4451 1160 98 6 0 chrX 29442872 29443045 -147531095 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 2422 205 85 74 chrX 29444347 29445302 -147528838 - HERV3 LTR ERV1 -5185 1146 321 701 267 29 125 chrX 29445645 29446229 -147527911 - MER34 LTR ERV1 -1 541 14 276 376 16 11 chrX 29446451 29446640 -147527500 + LTR16B LTR ERVL 125 314 -150 277 172 0 0 chrX 29446666 29446724 -147527416 + LTR1B LTR ERV1 1 58 -768 324 216 12 81 chrX 29446730 29446896 -147527244 + LTR1B LTR ERV1 675 1020 0 1030 167 69 0 chrX 29447082 29447197 -147526943 + AluJo SINE Alu 1 133 -179 567 43 0 0 chrX 29447197 29447267 -147526873 + (CA)n Simple_repeat Simple_repeat 2 71 0 1030 167 69 0 chrX 29447267 29447325 -147526815 + AluJo SINE Alu 133 186 -126 2609 112 27 66 chrX 29447325 29447875 -147526265 - LTR10A LTR ERV1 -17 616 47 670 190 126 44 chrX 29447895 29448207 -147525933 + MER31B LTR ERV1 8 466 0 1767 120 7 11 chrX 29448479 29448754 -147525386 + LTR10A LTR ERV1 204 477 -132 21 0 0 0 chrX 29448919 29448940 -147525200 + AT_rich Low_complexity Low_complexity 1 21 0 637 284 52 52 chrX 29449667 29449995 -147524145 + Charlie2 DNA MER1_type 14 341 -2521 1993 193 42 14 chrX 29449996 29450586 -147523554 + Charlie2 DNA MER1_type 2221 2827 -35 237 239 15 0 chrX 29450587 29450654 -147523486 - L1MD3 LINE L1 -20 7975 7908 2348 173 32 19 chrX 29450697 29451171 -147522969 + MER89 LTR ERV1 71 550 -9 4145 214 54 32 chrX 29451181 29451522 -147522618 - L1MC3 LINE L1 -793 6992 6660 207 88 0 0 chrX 29451522 29451556 -147522584 + (CA)n Simple_repeat Simple_repeat 2 35 0 4145 214 54 32 chrX 29451556 29452490 -147521650 - L1MC3 LINE L1 -1125 6660 5689 297 0 0 0 chrX 29452497 29452530 -147521610 + (TCTA)n Simple_repeat Simple_repeat 3 35 0 307 254 87 48 chrX 29452534 29452660 -147521480 - MLT2C1 LTR ERVL -55 342 212 231 189 27 14 chrX 29452660 29452734 -147521406 + CT-rich Low_complexity Low_complexity 1 75 0 469 261 79 6 chrX 29452743 29452908 -147521232 - MLT2C1 LTR ERVL -203 194 18 1163 142 32 28 chrX 29452913 29453131 -147521009 - THE1C LTR MaLR -156 219 1 2068 262 22 18 chrX 29453134 29453867 -147520273 - L1M4 LINE L1 -1774 4372 3637 279 258 0 32 chrX 29453895 29453988 -147520152 + Charlie2 DNA MER1_type 2773 2862 0 489 352 12 47 chrX 29454222 29454543 -147519597 + LTR16A1 LTR ERVL 148 457 0 335 345 106 29 chrX 29454718 29454964 -147519176 + L2 LINE L2 3008 3272 0 3830 191 53 16 chrX 29455149 29456149 -147517991 + L1PA12 LINE L1 2 1317 -6264 2401 94 3 0 chrX 29456170 29456477 -147517663 - AluSp SINE Alu -5 308 1 849 226 35 9 chrX 29456492 29456722 -147517418 - L1MC4 LINE L1 -1040 7002 6767 1190 87 7 0 chrX 29456722 29456872 -147517268 - AluSp SINE Alu -162 151 1 2985 234 11 15 chrX 29456872 29457526 -147516614 + L1PA12 LINE L1 1035 1685 -5896 * 3534 171 9 6 chrX 29457523 29458236 -147515904 + L1PA12 LINE L1 2433 3151 -4433 5030 218 21 3 chrX 29458242 29459468 -147514672 + L1PA12 LINE L1 3452 4702 -2882 2326 29 0 11 chrX 29459468 29459746 -147514394 + L1PA3 LINE L1 5878 6155 0 598 231 24 0 chrX 29460109 29460278 -147513862 + L1PA12 LINE L1 4690 4862 -2722 403 91 45 0 chrX 29460281 29460347 -147513793 + MSTB LTR MaLR 358 426 0 306 277 11 36 chrX 29461195 29461331 -147512809 - MIR SINE MIR -59 203 73 261 0 0 0 chrX 29461558 29461587 -147512553 + (A)n Simple_repeat Simple_repeat 1 29 0 4099 61 0 32 chrX 29461820 29462209 -147511931 - L1PA7 LINE L1 0 6154 5787 2507 77 0 0 chrX 29462209 29462520 -147511620 - AluY SINE Alu 0 311 1 4099 61 0 32 chrX 29462520 29462691 -147511449 - L1PA7 LINE L1 -367 5787 5612 273 335 89 25 chrX 29462772 29462930 -147511210 + MER91A DNA MER1_type 4 171 -25 5484 151 10 19 chrX 29465453 29466465 -147507675 - L1MA10 LINE L1 0 6334 5332 1410 146 232 6 chrX 29466465 29466788 -147507352 + MSTD LTR MaLR 1 396 0 2654 188 4 2 chrX 29466790 29467337 -147506803 - L1MA10 LINE L1 -812 5334 4787 * 5133 179 36 33 chrX 29467334 29468502 -147505638 + L1MC3 LINE L1 6614 7784 -1 1574 211 22 14 chrX 29468520 29468875 -147505265 + L1MD2 LINE L1 26 383 -6157 1052 209 38 14 chrX 29468885 29469172 -147504968 + L1MD2 LINE L1 4156 4449 -2091 * 1080 219 184 16 chrX 29469157 29469531 -147504609 + L1MD2 LINE L1 5874 6310 -49 654 113 0 0 chrX 29469536 29469633 -147504507 + AluSg/x SINE Alu 211 307 -3 2281 232 17 69 chrX 29469689 29470587 -147503553 + L1MD2 LINE L1 4448 5298 -1242 332 100 0 0 chrX 29470588 29470638 -147503502 - L1P LINE L1 -1412 4734 4685 * 3332 167 24 6 chrX 29470636 29471296 -147502844 + L1P LINE L1 4710 5381 -765 2063 189 65 0 chrX 29471294 29471755 -147502385 + L1MD2 LINE L1 6037 6527 -226 * 393 282 80 11 chrX 29471771 29471959 -147502181 - MER69 DNA AcHobo -2086 440 240 281 292 52 10 chrX 29472172 29472268 -147501872 - MER5A DNA MER1_type 0 189 90 220 296 93 9 chrX 29473165 29473273 -147500867 - MIR SINE MIR 0 262 146 244 244 70 70 chrX 29473277 29473433 -147500707 - LTR16C LTR ERVL -10 481 326 468 288 42 24 chrX 29473813 29474025 -147500115 - LTR16B LTR ERVL -13 451 236 260 298 58 19 chrX 29474550 29474654 -147499486 + LTR67 LTR ERVL 408 515 -42 182 65 65 0 chrX 29474711 29474742 -147499398 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 365 186 0 14 chrX 29474753 29474823 -147499317 - AluY SINE Alu -108 193 125 256 271 0 0 chrX 29475088 29475158 -147498982 - MER63 DNA MER1_type 0 1062 993 1492 270 87 15 chrX 29475440 29475970 -147498170 - MLT1G LTR MaLR -12 578 11 2533 54 0 22 chrX 29476138 29476455 -147497685 - AluY SINE Alu -1 310 1 426 343 113 59 chrX 29476735 29477868 -147496272 - L2 LINE L2 -44 3228 2035 250 270 30 0 chrX 29478376 29478476 -147495664 - L1ME LINE L1 -299 5822 5720 982 220 15 104 chrX 29478679 29478960 -147495180 - Charlie7 DNA MER1_type -1952 660 424 282 116 0 0 chrX 29478960 29479003 -147495137 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 982 220 15 104 chrX 29479003 29479126 -147495014 - Charlie7 DNA MER1_type -2188 424 292 249 250 53 66 chrX 29479203 29479281 -147494859 - Charlie7 DNA MER1_type -2462 150 73 2555 113 14 3 chrX 29479281 29479652 -147494488 + THE1C LTR MaLR 1 375 0 249 250 53 66 chrX 29479652 29479725 -147494415 - Charlie7 DNA MER1_type -2539 73 1 386 220 40 40 chrX 29480174 29480274 -147493866 - MIR SINE MIR 0 262 163 561 317 0 15 chrX 29480285 29480484 -147493656 - HERVL LTR ERVL -2453 3201 3006 2399 192 33 48 chrX 29480742 29481372 -147492768 + L1MC4a LINE L1 7187 7807 -1 344 291 201 8 chrX 29481413 29481547 -147492593 + MIR3 SINE MIR 49 208 0 213 360 59 73 chrX 29481563 29481849 -147492291 - L2 LINE L2 0 3272 2991 2725 230 22 19 chrX 29482147 29482820 -147491320 - L1ME3A LINE L1 -8 6162 5488 8624 107 9 33 chrX 29482870 29483476 -147490664 + HSMAR2 DNA Mariner 2 621 -681 1437 167 48 87 chrX 29483476 29483787 -147490353 - AluJb SINE Alu -13 299 1 8624 107 9 33 chrX 29483787 29484513 -147489627 + HSMAR2 DNA Mariner 621 1302 0 281 185 19 25 chrX 29484517 29484610 -147489530 - L1ME3A LINE L1 -775 5393 5298 1585 204 49 33 chrX 29484640 29485008 -147489132 - MLT1A2 LTR MaLR 0 374 1 1788 153 24 10 chrX 29485137 29485432 -147488708 - AluJo SINE Alu -13 299 1 356 222 94 17 chrX 29485542 29485659 -147488481 - MIR SINE MIR -52 210 85 348 303 90 21 chrX 29485955 29486143 -147487997 + L1MC3 LINE L1 4 204 -6222 1513 184 37 105 chrX 29486155 29486556 -147487584 - MLT1A2 LTR MaLR 0 374 1 8440 237 41 40 chrX 29486556 29490107 -147484033 + L1MC3 LINE L1 2405 5950 -476 1586 193 20 10 chrX 29490107 29490403 -147483737 + AluJb SINE Alu 1 299 -13 8440 237 41 40 chrX 29490403 29490547 -147483593 + L1MC3 LINE L1 5950 5261 -1165 877 176 0 29 chrX 29490547 29490717 -147483423 + FRAM SINE Alu 2 166 0 8440 237 41 40 chrX 29490717 29491142 -147482998 + L1MC3 LINE L1 5260 5683 -743 6698 165 74 66 chrX 29492848 29493718 -147480422 + L1MC3 LINE L1 6483 7456 -609 280 256 12 23 chrX 29493718 29493804 -147480336 + MLT1F1 LTR MaLR 24 108 -459 6698 165 74 66 chrX 29493804 29494419 -147479721 + L1MC3 LINE L1 7456 8065 0 1649 251 124 26 chrX 29494883 29494936 -147479204 + L2 LINE L2 2257 2303 -1010 1069 292 100 12 chrX 29494936 29495415 -147478725 + LTR33 LTR ERVL 1 521 0 1649 251 124 26 chrX 29495415 29496318 -147477822 + L2 LINE L2 2303 3313 0 300 254 0 53 chrX 29497783 29497897 -147476243 + L1MC4 LINE L1 7934 8041 -1 3613 117 0 4 chrX 29498328 29498841 -147475299 - MER9 LTR ERVK 0 511 1 182 200 18 55 chrX 29499130 29499185 -147474955 - L2 LINE L2 -8 3305 3253 3052 204 25 37 chrX 29499225 29500161 -147473979 - L1M1 LINE L1 -6296 1269 12 874 193 72 5 chrX 29500167 29500374 -147473766 - L1M4 LINE L1 -1393 4753 4533 26 0 0 0 chrX 29500374 29500400 -147473740 + AT_rich Low_complexity Low_complexity 1 26 0 302 225 144 6 chrX 29500410 29500570 -147473570 + Charlie2 DNA MER1_type 2241 2422 -440 2076 187 42 47 chrX 29500572 29500995 -147473145 - L1M4 LINE L1 -1601 4545 4124 2327 86 10 10 chrX 29500995 29501308 -147472832 + AluSp SINE Alu 1 313 0 2076 187 42 47 chrX 29501308 29501435 -147472705 - L1M4 LINE L1 -2022 4124 3998 484 227 43 39 chrX 29501524 29501731 -147472409 - L1MEc LINE L1 -3584 3060 2853 940 279 132 42 chrX 29501732 29503207 -147470933 - L1MEc LINE L1 -4001 2824 1218 1832 137 102 38 chrX 29503436 29503778 -147470362 + THE1B LTR MaLR 1 364 0 12060 84 3 2 chrX 29503778 29505357 -147468783 + THE1B-int LTR MaLR 1 1580 0 2179 125 73 14 chrX 29505357 29505701 -147468439 + THE1B LTR MaLR 1 364 0 3107 174 100 23 chrX 29507557 29508288 -147465852 - LTR48 LTR ERV1 0 787 1 1922 119 20 25 chrX 29510619 29511153 -147462987 + MER4A LTR ERV1 1 664 0 706 230 46 65 chrX 29511153 29511370 -147462770 + MLT1F1 LTR MaLR 45 257 -285 1328 103 41 0 chrX 29511371 29511565 -147462575 - MSTA LTR MaLR 0 428 227 2548 188 140 25 chrX 29511571 29512221 -147461919 + MER50 LTR ERV1 10 734 0 1305 157 31 0 chrX 29512221 29512444 -147461696 - MSTA LTR MaLR -198 230 1 1104 203 228 0 chrX 29512444 29512690 -147461450 + MLT1F1 LTR MaLR 266 567 0 2037 189 46 66 chrX 29513008 29513568 -147460572 + MER34B LTR ERV1 17 565 0 253 219 62 0 chrX 29513950 29514014 -147460126 - L2 LINE L2 -1 3312 3245 1618 200 45 97 chrX 29514026 29514602 -147459538 - MER34C LTR ERV1 -3 582 37 504 319 82 65 chrX 29514602 29514969 -147459171 - L2 LINE L2 -73 3199 2827 2206 142 23 3 chrX 29515070 29515422 -147458718 - MLT1A1 LTR MaLR -6 359 1 1219 253 76 83 chrX 29515657 29515984 -147458156 - L1MEc LINE L1 -5837 705 377 2269 113 0 0 chrX 29515984 29516285 -147457855 - AluSx SINE Alu -11 301 1 1219 253 76 83 chrX 29516285 29516652 -147457488 - L1MEc LINE L1 -6165 377 16 4180 92 2 3 chrX 29516691 29517062 -147457078 - L1PB1 LINE L1 -4 6147 5776 336 102 0 0 chrX 29517062 29517111 -147457029 + (CA)n Simple_repeat Simple_repeat 2 50 0 4180 92 2 3 chrX 29517111 29517324 -147456816 - L1PB1 LINE L1 -375 5776 5564 6761 84 39 8 chrX 29517345 29518402 -147455738 - L1PBa LINE L1 -4115 2748 1660 5361 153 64 29 chrX 29518399 29519634 -147454506 - L1PBa LINE L1 -5438 1425 3 * 189 107 0 0 chrX 29519839 29519867 -147454273 + (TA)n Simple_repeat Simple_repeat 2 29 0 26 30 0 0 chrX 29520016 29520049 -147454091 + AT_rich Low_complexity Low_complexity 1 33 0 1362 109 28 0 chrX 29520264 29520475 -147453665 + L1PA13 LINE L1 5942 6158 -5 246 128 0 0 chrX 29520727 29520766 -147453374 + (TCCCC)n Simple_repeat Simple_repeat 2 40 0 1564 183 33 7 chrX 29520779 29521052 -147453088 - AluJo SINE Alu -32 280 1 2225 92 3 41 chrX 29521106 29521422 -147452718 - AluSc SINE Alu -5 304 1 267 289 113 0 chrX 29521771 29521868 -147452272 + MIR SINE MIR 52 159 -103 345 347 31 0 chrX 29521994 29522092 -147452048 + MER91A DNA MER1_type 95 195 -1 673 313 113 27 chrX 29522483 29522895 -147451245 + LTR16A LTR ERVL 1 445 -5 2243 90 0 0 chrX 29522929 29523240 -147450900 + AluSc SINE Alu 1 311 0 513 259 29 35 chrX 29523264 29523438 -147450702 + MLT1J LTR MaLR 8 180 -331 377 269 48 14 chrX 29523821 29523966 -147450174 + MIR SINE MIR 86 235 -27 1410 298 17 5 chrX 29524209 29524625 -147449515 - LTR16A LTR ERVL -2 448 28 209 122 49 0 chrX 29525443 29525484 -147448656 + (TATG)n Simple_repeat Simple_repeat 3 45 0 211 368 103 17 chrX 29525489 29525606 -147448534 - MIR3 SINE MIR -67 141 15 534 238 11 43 chrX 29525899 29526084 -147448056 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 624 247 100 0 chrX 29526456 29526606 -147447534 + MER58C DNA MER1_type 1 165 -50 1495 251 17 47 chrX 29526703 29527169 -147446971 - LTR16A1 LTR ERVL -2 455 4 535 159 63 32 chrX 29527713 29527839 -147446301 - L1MC3 LINE L1 0 7785 7656 2605 188 33 9 chrX 29527843 29528392 -147445748 - L1MC3 LINE L1 -1167 6618 6057 420 208 21 10 chrX 29528393 29528489 -147445651 + L1MC2 LINE L1 5928 6024 -320 3574 248 43 35 chrX 29528489 29529929 -147444211 - L1MCb LINE L1 -2500 4064 2638 2084 134 16 3 chrX 29529929 29530235 -147443905 - AluSx SINE Alu -2 310 1 3574 248 43 35 chrX 29530235 29532621 -147441519 - L1MCb LINE L1 -3926 2638 61 2414 75 0 3 chrX 29532621 29532914 -147441226 - AluSg SINE Alu -18 292 1 3574 248 43 35 chrX 29532914 29532976 -147441164 - L1MCb LINE L1 -6503 61 1 231 277 108 78 chrX 29533535 29533633 -147440507 - MLT1L LTR MaLR -80 535 429 2386 87 0 16 chrX 29533633 29533943 -147440197 + AluSx SINE Alu 1 305 -7 231 277 108 78 chrX 29533943 29534010 -147440130 - MLT1L LTR MaLR -186 429 365 430 345 15 13 chrX 29534452 29534794 -147439346 - LTR16B LTR ERVL 0 464 51 896 307 70 34 chrX 29534989 29535490 -147438650 + LTR33 LTR ERVL 3 521 0 386 323 93 71 chrX 29535648 29535958 -147438182 - L2 LINE L2 0 3272 2956 247 350 76 59 chrX 29536029 29536266 -147437874 - L2 LINE L2 -520 2794 2554 25 0 0 0 chrX 29537127 29537152 -147436988 + AT_rich Low_complexity Low_complexity 1 25 0 428 289 58 35 chrX 29537162 29537508 -147436632 + L1ME LINE L1 5378 5731 -390 183 80 0 0 chrX 29537607 29537632 -147436508 + (TA)n Simple_repeat Simple_repeat 1 25 0 236 268 14 14 chrX 29537860 29537931 -147436209 - LTR33 LTR ERVL -306 215 145 830 290 105 29 chrX 29538264 29539015 -147435125 - ERVL LTR ERVL -387 5377 4511 387 0 0 0 chrX 29539015 29539058 -147435082 + (TA)n Simple_repeat Simple_repeat 1 43 0 830 290 105 29 chrX 29539058 29539127 -147435013 - ERVL LTR ERVL -1253 4511 4449 298 319 17 0 chrX 29539168 29539284 -147434856 - ERVL LTR ERVL -756 5008 4891 6435 158 34 33 chrX 29539420 29540803 -147433337 - L1MC3 LINE L1 0 7785 6402 1318 193 81 62 chrX 29540803 29541161 -147432979 + MLT1A1 LTR MaLR 1 365 0 7489 211 36 38 chrX 29541205 29542921 -147431219 + MLT1A1-int LTR MaLR 23 1735 0 1527 188 73 48 chrX 29542921 29543277 -147430863 + MLT1A1 LTR MaLR 1 365 0 1972 191 68 11 chrX 29543281 29543753 -147430387 - L1MC3 LINE L1 -1383 6402 5904 1891 244 42 36 chrX 29543755 29544284 -147429856 + MLT2B3 LTR ERVL 3 534 -20 198 103 0 0 chrX 29544284 29544313 -147429827 + (TCTCCC)n Simple_repeat Simple_repeat 5 33 0 246 111 0 0 chrX 29544329 29544365 -147429775 + MLT2C2 LTR ERVL 429 464 0 7827 196 30 13 chrX 29544365 29545580 -147428560 + ERVL-C2 LTR ERVL 1 1193 -4571 2158 106 0 20 chrX 29545580 29545873 -147428267 + AluSp SINE Alu 1 287 -26 387 0 0 0 chrX 29545873 29545916 -147428224 + (CA)n Simple_repeat Simple_repeat 2 44 0 7827 196 30 13 chrX 29545916 29546257 -147427883 + ERVL-C2 LTR ERVL 1192 1585 -4179 1497 263 40 23 chrX 29546257 29546351 -147427789 - L2 LINE L2 -1009 2305 2214 1919 188 121 38 chrX 29546351 29546393 -147427747 - MLT2B1 LTR ERVL 0 520 483 351 0 0 0 chrX 29546393 29546432 -147427708 + (CA)n Simple_repeat Simple_repeat 2 40 0 1919 188 121 38 chrX 29546432 29546869 -147427271 - MLT2B1 LTR ERVL -37 483 1 1497 263 40 23 chrX 29546869 29547204 -147426936 - L2 LINE L2 -1100 2214 1869 231 250 18 18 chrX 29547358 29547414 -147426726 + MIR SINE MIR 95 150 -58 2541 157 14 4 chrX 29547977 29548462 -147425678 + L1MA2 LINE L1 3944 4433 -1713 * 6703 96 5 29 chrX 29548459 29548560 -147425580 + L1MA2 LINE L1 5231 5333 -971 2189 126 10 0 chrX 29548560 29548870 -147425270 + AluSq SINE Alu 1 313 0 6703 96 5 29 chrX 29548870 29549866 -147424274 + L1MA2 LINE L1 5333 6304 0 200 125 0 25 chrX 29549869 29549909 -147424231 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chrX 29550380 29550448 -147423692 + AT_rich Low_complexity Low_complexity 1 68 0 1713 214 32 21 chrX 29551014 29551392 -147422748 - MLT1E LTR MaLR -2 591 210 561 225 10 50 chrX 29551432 29551632 -147422508 - HAL1 LINE L1 -1349 1158 967 423 38 0 0 chrX 29551683 29551736 -147422404 + (TG)n Simple_repeat Simple_repeat 2 54 0 1026 233 127 1 chrX 29551737 29552173 -147421967 - MLT2F LTR ERVL -126 537 1 2278 91 0 10 chrX 29552186 29552484 -147421656 - AluY SINE Alu -15 296 2 4819 174 46 15 chrX 29552581 29552935 -147421205 + MER49 LTR ERV1 5 346 -577 2182 124 0 3 chrX 29552935 29553233 -147420907 - AluSx SINE Alu -15 297 1 4819 174 46 15 chrX 29553233 29553769 -147420371 + MER49 LTR ERV1 346 923 0 261 237 55 190 chrX 29553899 29554023 -147420117 + L2 LINE L2 7 76 -3238 4241 93 22 0 chrX 29554023 29554617 -147419523 + L1PA14 LINE L1 5542 6148 -13 261 237 55 190 chrX 29554617 29554766 -147419374 + L2 LINE L2 76 243 -3071 * 681 287 35 13 chrX 29554735 29554965 -147419175 + L2 LINE L2 3074 3308 -5 2203 117 0 0 chrX 29555186 29555484 -147418656 - AluSp SINE Alu -15 298 1 325 298 0 53 chrX 29555905 29556056 -147418084 + MLT1J2 LTR MaLR 1 143 -307 261 202 60 83 chrX 29556084 29556226 -147417914 + MLT1J2 LTR MaLR 225 422 -28 955 319 98 0 chrX 29556978 29557386 -147416754 + LTR16A LTR ERVL 1 448 -2 195 42 0 0 chrX 29558358 29558382 -147415758 + (GA)n Simple_repeat Simple_repeat 1 24 0 2016 219 118 10 chrX 29558778 29559286 -147414854 + MLT1F1 LTR MaLR 5 567 0 2421 85 0 0 chrX 29559495 29559802 -147414338 - AluSx SINE Alu -5 307 1 313 362 31 52 chrX 29560371 29560506 -147413634 + MIR SINE MIR 18 148 -64 2441 101 0 0 chrX 29561067 29561373 -147412767 - AluSx SINE Alu -6 306 1 373 236 102 47 chrX 29561426 29561553 -147412587 - MER5A DNA MER1_type 0 189 56 296 343 34 63 chrX 29561428 29561603 -147412537 + MER5A DNA MER1_type 17 186 -3 * 1058 310 109 25 chrX 29561706 29562467 -147411673 + L2 LINE L2 2429 3255 -58 966 176 10 5 chrX 29563533 29563737 -147410403 - L1MD3 LINE L1 -6 7989 7785 2259 100 3 0 chrX 29563801 29564090 -147410050 + AluSq SINE Alu 1 290 -23 363 23 0 0 chrX 29564120 29564164 -147409976 + (CA)n Simple_repeat Simple_repeat 1 44 0 2704 26 0 3 chrX 29564613 29564924 -147409216 - AluY SINE Alu -1 310 1 2223 91 0 0 chrX 29565006 29565314 -147408826 + AluSx SINE Alu 1 308 0 191 286 79 0 chrX 29565862 29565925 -147408215 - MIR SINE MIR -137 125 58 898 165 81 17 chrX 29566603 29566839 -147407301 + LTR65 LTR ERV1 3 253 -416 22 0 0 0 chrX 29566958 29566980 -147407160 + AT_rich Low_complexity Low_complexity 1 22 0 2138 8 0 0 chrX 29566981 29567233 -147406907 - L1HS LINE L1 0 6155 5904 * 5305 17 0 0 chrX 29567219 29567863 -147406277 + L1HS LINE L1 5263 5906 -249 1383 207 118 11 chrX 29567863 29568245 -147405895 + LTR65 LTR ERV1 245 667 -2 2343 94 0 3 chrX 29568434 29568732 -147405408 + AluSx SINE Alu 1 297 -15 3222 161 54 5 chrX 29570314 29570890 -147403250 + MER6A DNA MER2_type 1 604 -1 2399 165 115 6 chrX 29571353 29571892 -147402248 + L1MB7 LINE L1 5566 6163 -21 411 229 41 24 chrX 29571902 29572072 -147402068 - Charlie4 DNA MER1_type -528 1433 1261 2424 84 0 0 chrX 29572602 29572899 -147401241 + AluSx SINE Alu 1 297 -15 856 208 67 28 chrX 29573047 29573331 -147400809 - Charlie4 DNA MER1_type -1665 296 2 562 200 37 0 chrX 29573512 29573647 -147400493 - L1MD2 LINE L1 -22 6337 6198 441 225 0 0 chrX 29575413 29575493 -147398647 + FRAM/FAM SINE Alu 1 79 -97 2323 103 0 3 chrX 29575661 29575962 -147398178 + AluSx SINE Alu 2 301 -11 754 287 147 14 chrX 29576567 29577009 -147397131 + LTR33A LTR ERVL 23 523 0 1636 210 63 18 chrX 29577431 29577874 -147396266 + MLT1C LTR MaLR 1 463 -4 3024 230 100 15 chrX 29577919 29579100 -147395040 - L1M4 LINE L1 -2466 3680 2400 10955 25 0 2 chrX 29579667 29581648 -147392492 + L1PA4 LINE L1 4177 6155 0 2495 93 0 0 chrX 29582922 29583234 -147390906 + AluSx SINE Alu 1 312 0 1224 124 0 0 chrX 29583456 29583625 -147390515 - AluSg/x SINE Alu -10 302 134 2284 91 0 10 chrX 29583625 29583933 -147390207 - AluY SINE Alu -6 305 1 404 340 95 66 chrX 29585126 29585623 -147388517 + HAL1 LINE L1 108 618 -1889 507 130 98 0 chrX 29585861 29585953 -147388187 - L1MA7 LINE L1 0 6291 6191 249 282 64 39 chrX 29586297 29586375 -147387765 + L2 LINE L2 3170 3249 -23 3387 136 53 5 chrX 29586503 29587086 -147387054 - L1MA4 LINE L1 -23 6277 5667 288 152 106 0 chrX 29587063 29587129 -147387011 - L1MA7 LINE L1 -62 6229 6157 * 4584 145 27 24 chrX 29587133 29588120 -147386020 - L1MA7 LINE L1 -221 6070 5086 23 0 0 0 chrX 29588120 29588143 -147385997 + AT_rich Low_complexity Low_complexity 1 23 0 264 264 128 14 chrX 29589801 29589949 -147384191 + HAL1 LINE L1 2020 2184 -323 2377 92 0 0 chrX 29591670 29591973 -147382167 + AluSg SINE Alu 1 303 -7 466 302 154 0 chrX 29592254 29592403 -147381737 + MER5A DNA MER1_type 12 183 -6 2068 196 42 27 chrX 29592903 29593311 -147380829 - MLT2D LTR ERVL 0 414 1 1676 161 71 107 chrX 29594055 29594369 -147379771 - MSTD LTR MaLR 0 396 99 2223 106 0 3 chrX 29594369 29594661 -147379479 - AluSp SINE Alu -22 291 1 1676 161 71 107 chrX 29594661 29594757 -147379383 - MSTD LTR MaLR -297 99 1 1708 60 18 9 chrX 29594895 29595113 -147379027 + L1PA12 LINE L1 5949 6168 0 660 264 163 50 chrX 29595523 29595988 -147378152 - LTR33 LTR ERVL 0 521 4 204 40 0 0 chrX 29596657 29596682 -147377458 + (A)n Simple_repeat Simple_repeat 1 25 0 2588 123 15 15 chrX 29596817 29597217 -147376923 - L1MB4 LINE L1 0 6180 5781 22 0 0 0 chrX 29597410 29597432 -147376708 + AT_rich Low_complexity Low_complexity 1 22 0 767 288 56 72 chrX 29597460 29598051 -147376089 - L1ME3 LINE L1 -296 5866 5354 639 320 44 24 chrX 29598513 29598763 -147375377 - MIR SINE MIR -6 256 2 2010 157 0 25 chrX 29600340 29600659 -147373481 - AluJb SINE Alu -1 311 1 2678 164 70 19 chrX 29600867 29601393 -147372747 - LTR49 LTR ERV1 -42 553 1 822 301 154 3 chrX 29602236 29602535 -147371605 + MLT1I LTR MaLR 1 344 -65 463 323 47 43 chrX 29602630 29602909 -147371231 + LTR16B LTR ERVL 40 319 -145 435 275 7 40 chrX 29602951 29603100 -147371040 + LTR16B LTR ERVL 320 463 -1 845 321 56 14 chrX 29604186 29604541 -147369599 - LTR16B LTR ERVL 0 464 95 298 282 137 43 chrX 29604836 29604953 -147369187 + MIR SINE MIR 64 191 -71 304 205 102 84 chrX 29605182 29605348 -147368792 - MLT1K LTR MaLR -57 531 363 1982 117 59 0 chrX 29605722 29605995 -147368145 - AluSx SINE Alu -23 289 1 817 316 122 11 chrX 29606104 29606481 -147367659 - LTR16C LTR ERVL 0 491 73 2682 199 52 15 chrX 29606512 29607054 -147367086 - MLT1F1 LTR MaLR -5 562 1 351 0 0 0 chrX 29607189 29607228 -147366912 + (TTTC)n Simple_repeat Simple_repeat 1 39 0 1332 6 0 33 chrX 29607229 29607412 -147366728 + (TTC)n Simple_repeat Simple_repeat 1 177 0 252 86 0 0 chrX 29607413 29607448 -147366692 + (TTCTCC)n Simple_repeat Simple_repeat 4 38 0 1809 151 26 35 chrX 29607448 29607759 -147366381 - AluSq SINE Alu -1 312 5 447 305 45 11 chrX 29608312 29608489 -147365651 - LTR16C LTR ERVL -32 459 277 8852 112 5 29 chrX 29608631 29609732 -147364408 + HSMAR2 DNA Mariner 9 1073 -229 1888 142 33 0 chrX 29609732 29610007 -147364133 + AluJb SINE Alu 7 290 -22 8852 112 5 29 chrX 29610007 29610232 -147363908 + HSMAR2 DNA Mariner 1073 1302 0 3829 110 54 17 chrX 29610892 29611466 -147362674 + LTR49 LTR ERV1 1 595 0 4097 146 27 17 chrX 29611694 29612398 -147361742 + MER50 LTR ERV1 1 711 -23 2155 144 101 93 chrX 29612572 29613128 -147361012 - LTR49 LTR ERV1 -33 562 3 2241 81 7 7 chrX 29613609 29613904 -147360236 - AluSq SINE Alu -18 295 1 1007 181 62 6 chrX 29614128 29614305 -147359835 + MER5A DNA MER1_type 3 189 0 369 203 13 0 chrX 29614628 29614707 -147359433 - MER5A DNA MER1_type -83 106 27 2992 116 51 28 chrX 29614728 29615387 -147358753 + LTR8A LTR ERV1 1 727 0 403 326 11 17 chrX 29616096 29616274 -147357866 + CT-rich Low_complexity Low_complexity 4 180 0 295 268 150 39 chrX 29618173 29618300 -147355840 + MIR SINE MIR 5 145 -117 326 118 132 29 chrX 29618307 29618375 -147355765 - MER34 LTR ERV1 0 542 468 845 173 70 193 chrX 29618429 29618762 -147355378 - MER34B LTR ERV1 -161 404 140 2357 39 0 21 chrX 29618762 29619044 -147355096 + AluY SINE Alu 2 277 -34 845 173 70 193 chrX 29619044 29619166 -147354974 - MER34B LTR ERV1 -425 140 5 2412 87 0 0 chrX 29619693 29619992 -147354148 + AluSg SINE Alu 1 299 -11 3126 168 22 13 chrX 29620973 29621527 -147352613 - MER89 LTR ERV1 0 559 1 1464 248 58 22 chrX 29621660 29622075 -147352065 + LTR16A LTR ERVL 21 450 0 344 146 0 18 chrX 29622086 29622141 -147351999 + LTR33 LTR ERVL 468 521 0 285 75 0 0 chrX 29622334 29622374 -147351766 + (CA)n Simple_repeat Simple_repeat 2 41 0 1100 231 4 21 chrX 29622818 29623056 -147351084 + MIR SINE MIR 5 238 -24 2297 120 3 0 chrX 29623313 29623621 -147350519 + AluSx SINE Alu 1 309 -3 490 257 60 9 chrX 29623656 29623887 -147350253 + L1ME LINE L1 5241 5482 -680 338 211 26 13 chrX 29624358 29624434 -147349706 + MLT1K LTR MaLR 512 588 0 385 334 77 67 chrX 29624557 29624946 -147349194 - L2 LINE L2 -339 2975 2583 706 274 5 39 chrX 29625698 29625902 -147348238 + LTR16A LTR ERVL 97 293 -157 2595 168 20 58 chrX 29625902 29626443 -147347697 - MLT1D LTR MaLR 0 505 3 784 211 19 6 chrX 29626444 29626605 -147347535 + LTR16A LTR ERVL 288 450 0 1406 226 7 10 chrX 29626899 29627195 -147346945 - LTR16A LTR ERVL 0 450 156 1436 204 35 45 chrX 29627196 29627594 -147346546 - L1ME LINE L1 -578 5588 5195 409 271 7 21 chrX 29628232 29628376 -147345764 - LTR16A1 LTR ERVL -4 453 312 944 259 47 22 chrX 29628574 29628843 -147345297 + LTR16A1 LTR ERVL 168 488 -3 720 180 0 0 chrX 29629472 29629600 -147344540 - MLT1B LTR MaLR 0 390 263 1602 209 67 64 chrX 29629602 29630303 -147343837 + MER49 LTR ERV1 1 901 -22 2303 96 3 3 chrX 29630303 29630606 -147343534 - AluSq SINE Alu -10 303 1 1602 209 67 64 chrX 29630606 29630630 -147343510 + MER49 LTR ERV1 901 923 0 1125 171 38 49 chrX 29630634 29630897 -147343243 - MLT1B LTR MaLR -130 260 1 1720 260 74 42 chrX 29630898 29631645 -147342495 + Charlie2b DNA MER1_type 60 830 -1952 1022 199 117 35 chrX 29631645 29631986 -147342154 + Charlie2a DNA MER1_type 1625 1993 -869 782 215 0 13 chrX 29631987 29632145 -147341995 + FRAM SINE Alu 1 155 -21 397 219 126 0 chrX 29632167 29632286 -147341854 + Charlie2a DNA MER1_type 2004 2137 -725 341 348 27 27 chrX 29634447 29634703 -147339437 + ERVL LTR ERVL 798 1053 -4711 346 188 25 38 chrX 29634875 29634955 -147339185 + Tigger5 DNA MER2_type 1 79 -2244 422 171 13 0 chrX 29634956 29635032 -147339108 - Tigger5 DNA MER2_type -5 2318 2242 314 115 0 19 chrX 29635022 29635074 -147339066 + Tigger5 DNA MER2_type 2242 2292 -31 * 1291 193 107 45 chrX 29635181 29635769 -147338371 - LTR48B LTR ERV1 -3 641 1 435 353 30 30 chrX 29635901 29636053 -147338087 + ERVL LTR ERVL 1302 1456 -3540 2321 103 132 8 chrX 29636053 29636433 -147337707 + MSTA LTR MaLR 1 427 -1 435 353 30 30 chrX 29636433 29636549 -147337591 + ERVL LTR ERVL 1455 1570 -3426 607 284 36 21 chrX 29636566 29636915 -147337225 - LTR16A LTR ERVL -14 436 24 771 319 24 11 chrX 29636943 29637344 -147336796 + ERVL LTR ERVL 1680 2043 -2953 1113 301 34 10 chrX 29637360 29637769 -147336371 + ERVL LTR ERVL 2144 2562 -3202 390 204 239 0 chrX 29637883 29637996 -147336144 - LTR16A LTR ERVL 0 450 311 456 35 0 0 chrX 29638471 29638529 -147335611 + (GA)n Simple_repeat Simple_repeat 1 58 0 308 234 64 11 chrX 29639736 29639830 -147334310 - L1ME LINE L1 -482 5639 5541 1133 243 106 58 chrX 29640018 29640495 -147333645 - L1MC4 LINE L1 -20 8022 7509 976 193 18 55 chrX 29640495 29640713 -147333427 + MER63A DNA MER1_type 1 210 0 1133 243 106 58 chrX 29640713 29640837 -147333303 - L1MC4 LINE L1 -533 7509 7392 402 21 0 0 chrX 29640869 29640916 -147333224 + (TG)n Simple_repeat Simple_repeat 2 48 0 970 292 69 6 chrX 29641339 29641699 -147332441 - LTR16C LTR ERVL 0 491 109 283 285 146 7 chrX 29642592 29642743 -147331397 - LTR16C LTR ERVL -26 465 294 2359 87 7 0 chrX 29643685 29643984 -147330156 - AluSg SINE Alu -9 301 1 192 318 32 0 chrX 29644000 29644063 -147330077 - L2 LINE L2 -2848 466 402 21 0 0 0 chrX 29644535 29644556 -147329584 + AT_rich Low_complexity Low_complexity 1 21 0 26 23 0 23 chrX 29645099 29645124 -147329016 + AT_rich Low_complexity Low_complexity 1 26 -17 1999 128 0 10 chrX 29645124 29645413 -147328727 + AluSc SINE Alu 1 286 -23 26 23 0 23 chrX 29645413 29645431 -147328709 + AT_rich Low_complexity Low_complexity 26 43 0 1030 156 0 17 chrX 29645962 29646135 -147328005 - FRAM SINE Alu -14 162 1 961 320 83 29 chrX 29647282 29647773 -147326367 - LTR33 LTR ERVL 0 521 4 216 133 22 22 chrX 29648106 29648151 -147325989 + CT-rich Low_complexity Low_complexity 1 45 0 225 0 0 0 chrX 29649088 29649113 -147325027 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 337 21 32 chrX 29649448 29649543 -147324597 - MER5A DNA MER1_type -6 183 90 1863 177 98 36 chrX 29649548 29649988 -147324152 - MLT1C LTR MaLR 0 467 1 375 338 75 39 chrX 29650346 29650654 -147323486 + LTR16C LTR ERVL 167 485 -6 235 234 0 0 chrX 29650654 29650701 -147323439 - MER5A DNA MER1_type -136 53 7 2040 151 0 16 chrX 29650868 29651185 -147322955 + AluJo SINE Alu 1 312 0 315 0 0 0 chrX 29651855 29651890 -147322250 + (TG)n Simple_repeat Simple_repeat 2 36 0 440 266 272 0 chrX 29652104 29652288 -147321852 + MIR SINE MIR 28 261 -1 319 208 132 9 chrX 29652507 29652613 -147321527 - HAL1 LINE L1 -1411 1096 978 1240 279 139 37 chrX 29652677 29653387 -147320753 - HAL1 LINE L1 -1639 868 86 387 0 0 0 chrX 29653873 29653916 -147320224 + (TG)n Simple_repeat Simple_repeat 2 44 0 207 191 0 0 chrX 29654202 29654249 -147319891 + A-rich Low_complexity Low_complexity 1 47 0 260 281 110 12 chrX 29654460 29654542 -147319598 + MIR3 SINE MIR 100 189 -19 495 295 126 6 chrX 29655109 29655292 -147318848 + MIR3 SINE MIR 1 205 -3 25 0 0 0 chrX 29655333 29655358 -147318782 + AT_rich Low_complexity Low_complexity 1 25 0 205 284 90 0 chrX 29655457 29655524 -147318616 - MIR SINE MIR -142 120 48 282 262 136 10 chrX 29655605 29655708 -147318432 + MIR SINE MIR 24 139 -69 2212 121 3 7 chrX 29656621 29656926 -147317214 + AluSx SINE Alu 1 304 -8 1235 196 100 102 chrX 29657018 29657488 -147316652 + MLT2B1 LTR ERVL 1 471 -49 631 0 25 0 chrX 29657488 29657567 -147316573 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 1235 196 100 102 chrX 29657567 29657617 -147316523 + MLT2B1 LTR ERVL 471 520 0 2619 158 9 2 chrX 29657680 29658124 -147316016 + MLT1C LTR MaLR 21 467 0 535 267 49 78 chrX 29658288 29658575 -147315565 + L1ME4a LINE L1 5687 5963 -158 2414 108 25 14 chrX 29658575 29658935 -147315205 - THE1B LTR MaLR 0 364 1 535 267 49 78 chrX 29658935 29659086 -147315054 + L1ME4a LINE L1 5963 6117 -4 2976 203 66 37 chrX 29659571 29659821 -147314319 - L1ME1 LINE L1 -5 6230 5989 363 126 0 158 chrX 29659821 29659916 -147314224 + MADE1 DNA Mariner 1 80 0 2976 203 66 37 chrX 29659916 29660774 -147313366 - L1ME1 LINE L1 -246 5989 5086 2182 242 75 35 chrX 29660771 29661477 -147312663 - L1ME1 LINE L1 -1828 4387 3632 * 1945 166 0 3 chrX 29661477 29661773 -147312367 + AluJo SINE Alu 1 295 -17 2182 242 75 35 chrX 29661773 29662009 -147312131 - L1ME1 LINE L1 -2583 3632 3407 2050 255 16 18 chrX 29662011 29662579 -147311561 + MLT1F1 LTR MaLR 1 567 0 271 277 29 15 chrX 29662580 29662717 -147311423 + MLT1F1-int LTR MaLR 2 140 -1231 523 160 11 0 chrX 29662718 29662812 -147311328 + MLT1F1 LTR MaLR 469 563 -4 21 0 0 0 chrX 29662815 29662836 -147311304 + AT_rich Low_complexity Low_complexity 1 21 0 17396 190 32 15 chrX 29662840 29664332 -147309808 - L1PA15 LINE L1 -9 6807 5341 2492 84 0 0 chrX 29664332 29664640 -147309500 + AluY SINE Alu 1 308 -3 17396 190 32 15 chrX 29664640 29665288 -147308852 - L1PA15 LINE L1 -1475 5341 4705 2383 97 7 3 chrX 29665288 29665598 -147308542 - AluSq SINE Alu 0 313 3 17396 190 32 15 chrX 29665598 29670074 -147304066 - L1PA15 LINE L1 -2111 4705 1 5109 223 102 71 chrX 29670098 29672297 -147301843 - L1ME1 LINE L1 -2804 3411 959 685 200 0 8 chrX 29672297 29672422 -147301718 - FLAM_C SINE Alu -19 124 1 5109 223 102 71 chrX 29672422 29673376 -147300764 - L1ME1 LINE L1 -5256 959 35 917 234 24 0 chrX 29675005 29675210 -147298930 + MIR SINE MIR 4 213 -49 379 347 40 0 chrX 29675661 29675834 -147298306 - MIR SINE MIR 0 262 83 445 236 9 45 chrX 29676383 29676493 -147297647 + MIR SINE MIR 2 107 -155 * 718 150 0 0 chrX 29676489 29676602 -147297538 - MIR SINE MIR -66 196 84 407 277 40 89 chrX 29676663 29676887 -147297253 - L1MC4 LINE L1 -1 8041 7829 719 202 62 70 chrX 29676930 29677202 -147296938 - L1ME2 LINE L1 -20 6144 5875 2328 81 37 0 chrX 29677333 29677451 -147296689 + AluSc SINE Alu 1 113 -196 207 0 0 0 chrX 29677451 29677474 -147296666 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2328 81 37 0 chrX 29677474 29677653 -147296487 + AluSc SINE Alu 113 309 0 337 158 24 0 chrX 29677741 29677823 -147296317 + (TA)n Simple_repeat Simple_repeat 2 85 0 261 224 151 83 chrX 29679029 29679133 -147295007 - MER5A DNA MER1_type -4 185 62 968 120 6 12 chrX 29679133 29679300 -147294840 - L1MA4A LINE L1 -2 6301 6136 261 224 151 83 chrX 29679300 29679364 -147294776 - MER5A DNA MER1_type -127 62 4 260 168 126 59 chrX 29679873 29679992 -147294148 - L1MC4 LINE L1 -821 7221 7095 1105 256 92 53 chrX 29680042 29680106 -147294034 - L1MC4 LINE L1 -818 7075 7015 2504 66 3 0 chrX 29680106 29680408 -147293732 - AluSp SINE Alu -10 303 1 1105 256 92 53 chrX 29680408 29681353 -147292787 - L1MC4 LINE L1 -878 7015 5916 450 295 8 8 chrX 29681495 29681624 -147292516 + L2 LINE L2 3184 3312 -1 413 276 17 77 chrX 29681816 29681997 -147292143 + MER5A DNA MER1_type 2 171 -18 224 306 14 14 chrX 29682004 29682076 -147292064 + L3 LINE CR1 1399 1470 -107 202 200 55 18 chrX 29682145 29682200 -147291940 + L2 LINE L2 3216 3272 0 2515 76 10 90 chrX 29683231 29683641 -147290499 + MER51B LTR ERV1 1 377 0 1168 238 77 24 chrX 29683641 29683977 -147290163 + MLT1C LTR MaLR 66 419 -48 706 310 130 23 chrX 29684028 29684172 -147289968 - L1M4 LINE L1 -1567 4579 4452 1574 173 0 76 chrX 29684172 29684502 -147289638 - AluJo SINE Alu -7 305 1 706 310 130 23 chrX 29684502 29685420 -147288720 - L1M4 LINE L1 -1694 4452 3403 2559 138 50 5 chrX 29685496 29685937 -147288203 - MER65C LTR ERV1 0 461 1 279 283 85 28 chrX 29686342 29686448 -147287692 + MLT1I LTR MaLR 98 209 -200 1060 141 89 42 chrX 29686514 29686727 -147287413 - MER58A DNA MER1_type 0 224 2 4400 104 55 3 chrX 29738027 29738717 -147235423 + Tigger3(Golem) DNA MER2_type 2291 3016 -13 391 270 95 30 chrX 29738953 29739153 -147234987 + L2 LINE L2 3100 3312 -1 264 308 0 0 chrX 29740659 29740724 -147233416 + MIR3 SINE MIR 135 199 -9 213 383 83 11 chrX 29740722 29740902 -147233238 + L2 LINE L2 2832 3024 -248 * 191 237 220 25 chrX 29741378 29741496 -147232644 - L2 LINE L2 -9 3304 3164 201 356 58 29 chrX 29741625 29741799 -147232341 - L2 LINE L2 -338 2976 2798 5029 212 39 51 chrX 29742010 29743438 -147230702 - L1MD2 LINE L1 -1 6358 4978 180 0 0 0 chrX 29743438 29743458 -147230682 + (TTG)n Simple_repeat Simple_repeat 2 21 0 5029 212 39 51 chrX 29743458 29744713 -147229427 - L1MD2 LINE L1 -1381 4978 3708 233 355 18 9 chrX 29745588 29745698 -147228442 - MIR SINE MIR -65 143 33 183 288 175 12 chrX 29746354 29746434 -147227706 + L2 LINE L2 3176 3268 -4 553 283 28 23 chrX 29746610 29746787 -147227353 + MIR SINE MIR 74 251 -11 229 280 60 0 chrX 29746826 29746876 -147227264 - L2 LINE L2 -18 3254 3202 478 248 41 0 chrX 29746876 29746997 -147227143 - MER119 DNA MER1_type -3 580 455 486 262 0 10 chrX 29747012 29747115 -147227025 - MER119 DNA MER1_type -481 102 1 1009 290 34 53 chrX 29747483 29747956 -147226184 + LTR16B LTR ERVL 1 464 0 2025 317 81 10 chrX 29748496 29749295 -147224845 + L2 LINE L2 1193 2048 -1266 569 259 29 29 chrX 29749357 29749527 -147224613 + L2 LINE L2 3140 3309 -4 313 233 35 35 chrX 29750118 29750204 -147223936 + MIR SINE MIR 172 257 -5 943 206 0 6 chrX 29750927 29751092 -147223048 - FAM SINE Alu -11 164 1 923 216 6 0 chrX 29751174 29751341 -147222799 + MER5A DNA MER1_type 4 171 -18 359 270 10 20 chrX 29751614 29751714 -147222426 - LTR16A LTR ERVL -9 441 343 243 306 28 89 chrX 29751732 29751912 -147222228 - LTR16A LTR ERVL -281 169 1 671 153 6 34 chrX 29752651 29752827 -147221313 + CT-rich Low_complexity Low_complexity 2 172 0 27 29 0 0 chrX 29752941 29752975 -147221165 + AT_rich Low_complexity Low_complexity 1 34 0 453 318 80 29 chrX 29753001 29753439 -147220701 + HAL1 LINE L1 17 512 -1995 948 56 6 37 chrX 29753557 29753719 -147220421 + (GAAA)n Simple_repeat Simple_repeat 2 158 0 591 224 109 102 chrX 29753724 29753910 -147220230 + HAL1 LINE L1 2044 2227 -280 3014 125 41 30 chrX 29753910 29754370 -147219770 + MER34B LTR ERV1 1 470 -95 1898 173 0 0 chrX 29754370 29754676 -147219464 - AluJb SINE Alu -6 306 1 3014 125 41 30 chrX 29754676 29754774 -147219366 + MER34B LTR ERV1 470 565 0 591 224 109 102 chrX 29754774 29755028 -147219112 + HAL1 LINE L1 2227 2487 -20 2699 93 5 11 chrX 29756009 29756386 -147217754 + THE1C LTR MaLR 1 375 0 197 268 18 18 chrX 29757039 29757095 -147217045 + MIR SINE MIR 20 75 -187 328 247 58 45 chrX 29757298 29757452 -147216688 + MIR SINE MIR 107 262 0 194 234 78 78 chrX 29758274 29758351 -147215789 - L2 LINE L2 -1 3312 3236 631 242 91 35 chrX 29759152 29759292 -147214848 - LTR16C LTR ERVL 0 491 360 1416 209 62 36 chrX 29759292 29759633 -147214507 + MLT2C1 LTR ERVL 1 332 -65 1164 34 34 0 chrX 29759633 29759842 -147214298 + (TCTA)n Simple_repeat Simple_repeat 1 216 0 216 0 0 0 chrX 29759844 29759868 -147214272 + (TCCA)n Simple_repeat Simple_repeat 3 26 0 1416 209 62 36 chrX 29759868 29759908 -147214232 + MLT2C1 LTR ERVL 332 397 0 631 242 91 35 chrX 29759908 29759965 -147214175 - LTR16C LTR ERVL -131 360 283 225 267 0 0 chrX 29759970 29760015 -147214125 - LTR16C LTR ERVL -295 196 152 1902 150 4 0 chrX 29760218 29760498 -147213642 + AluSx SINE Alu 3 283 -29 620 271 157 0 chrX 29760881 29761091 -147213049 + MIR SINE MIR 18 260 -2 597 309 28 60 chrX 29761534 29761697 -147212443 + MIR SINE MIR 20 174 -88 765 243 114 5 chrX 29761697 29761899 -147212241 + MER58A DNA MER1_type 1 224 0 597 309 28 60 chrX 29761899 29761984 -147212156 + MIR SINE MIR 174 260 -2 506 256 40 0 chrX 29763041 29763166 -147210974 - MIR3 SINE MIR -23 185 56 971 213 10 0 chrX 29763266 29763463 -147210677 - MER115 DNA AcHobo -1 692 494 711 67 0 0 chrX 29764428 29764557 -147209583 + AluY SINE Alu 196 324 0 546 57 0 0 chrX 29765238 29765308 -147208832 + (TG)n Simple_repeat Simple_repeat 2 71 0 494 289 106 34 chrX 29766102 29766686 -147207454 + HAL1 LINE L1 1093 1718 -789 284 377 42 45 chrX 29766782 29766922 -147207218 + L2 LINE L2 2545 2684 -630 2478 73 0 9 chrX 29766922 29767238 -147206902 - AluSp SINE Alu 0 313 1 284 377 42 45 chrX 29767238 29767431 -147206709 + L2 LINE L2 2684 2877 -437 2364 235 38 26 chrX 29767934 29768518 -147205622 - MLT1E LTR MaLR 0 593 3 246 293 49 0 chrX 29769232 29769324 -147204816 - MIR SINE MIR -62 146 45 705 214 61 86 chrX 29769707 29770034 -147204106 + L1MC4 LINE L1 7723 8041 -1 379 277 9 18 chrX 29770041 29770153 -147203987 - MIR SINE MIR -86 176 66 2213 78 0 3 chrX 29770806 29771113 -147203027 + AluY SINE Alu 1 306 0 378 0 0 0 chrX 29773091 29773133 -147201007 + (TA)n Simple_repeat Simple_repeat 1 42 0 369 0 0 0 chrX 29773132 29773173 -147200967 + (GA)n Simple_repeat Simple_repeat 2 42 0 * 216 182 23 0 chrX 29774028 29774072 -147200068 - L2 LINE L2 -1 3312 3268 269 285 52 81 chrX 29774966 29775252 -147198888 - LTR16A1 LTR ERVL 0 457 159 665 306 112 32 chrX 29776807 29778365 -147195775 - L1 LINE L1 -2325 3821 2147 248 288 96 22 chrX 29778579 29778808 -147195332 - L1M4 LINE L1 -2895 3251 3006 212 234 78 13 chrX 29779296 29779373 -147194767 + L2 LINE L2 2271 2352 -962 1478 213 12 82 chrX 29780008 29780408 -147193732 - MLT1A2 LTR MaLR -2 372 1 2171 282 18 12 chrX 29780932 29781605 -147192535 + L1ME3A LINE L1 35 711 -5685 * 2597 236 39 17 chrX 29781588 29782401 -147191739 + L1ME3A LINE L1 2725 3555 -2660 247 148 0 0 chrX 29782403 29782457 -147191683 + L1MD3 LINE L1 7942 7995 0 844 280 38 40 chrX 29782946 29783368 -147190772 + L1ME3A LINE L1 5542 5962 -277 207 0 0 0 chrX 29783569 29783592 -147190548 + (T)n Simple_repeat Simple_repeat 1 23 0 429 20 0 0 chrX 29784109 29784159 -147189981 + (TG)n Simple_repeat Simple_repeat 2 51 0 200 333 86 0 chrX 29784975 29785068 -147189072 - MIR3 SINE MIR -97 111 11 521 255 101 29 chrX 29785916 29786124 -147188016 - MIR SINE MIR -4 258 36 3080 78 49 5 chrX 29786397 29786785 -147187355 + MLT2A1 LTR ERVL 1 411 -33 258 32 0 0 chrX 29786785 29786816 -147187324 + (CA)n Simple_repeat Simple_repeat 1 31 0 3080 78 49 5 chrX 29786816 29786852 -147187288 + MLT2A1 LTR ERVL 411 444 0 4124 139 108 123 chrX 29787139 29787188 -147186952 + L1MC3 LINE L1 6711 6759 -1026 2225 125 0 0 chrX 29787188 29787500 -147186640 + AluSx SINE Alu 1 312 0 4124 139 108 123 chrX 29787500 29787851 -147186289 + L1MC3 LINE L1 6759 7114 -671 402 265 20 0 chrX 29787851 29787949 -147186191 + MLT1F1 LTR MaLR 35 134 -433 4124 139 108 123 chrX 29787949 29788531 -147185609 + L1MC3 LINE L1 7114 7775 -10 462 261 8 15 chrX 29789529 29789663 -147184477 - MER94 DNA DNA 0 134 2 308 279 13 0 chrX 29791213 29791292 -147182848 + MIR3 SINE MIR 104 183 -25 297 0 0 0 chrX 29792696 29792729 -147181411 + (CA)n Simple_repeat Simple_repeat 2 34 0 284 246 14 0 chrX 29793253 29793322 -147180818 - LTR16A LTR ERVL 0 450 381 644 238 85 40 chrX 29793323 29793546 -147180594 - LTR16A LTR ERVL -189 261 29 319 297 73 18 chrX 29793608 29793773 -147180367 - HAL1b LINE L1 -865 483 310 223 234 0 0 chrX 29794661 29794708 -147179432 + (TG)n Simple_repeat Simple_repeat 2 48 0 844 279 92 49 chrX 29795120 29795611 -147178529 + LTR33A LTR ERVL 1 512 -11 2313 245 37 37 chrX 29796131 29796771 -147177369 - MER77 LTR ERV1 -3 602 54 225 188 0 0 chrX 29797416 29797464 -147176676 + (TA)n Simple_repeat Simple_repeat 2 49 0 264 154 0 0 chrX 29797816 29797868 -147176272 + (CA)n Simple_repeat Simple_repeat 2 53 0 843 275 97 37 chrX 29798308 29798712 -147175428 - MLT1J2 LTR MaLR -2 448 21 992 270 124 39 chrX 29799529 29800043 -147174097 + MLT1F1 LTR MaLR 2 559 -8 318 321 65 24 chrX 29800466 29800634 -147173506 + MIR SINE MIR 78 252 -10 363 251 139 12 chrX 29800778 29800943 -147173197 + MIR SINE MIR 18 202 -60 2369 99 0 10 chrX 29801077 29801390 -147172750 + AluSx SINE Alu 1 310 -2 30 45 0 0 chrX 29802855 29802899 -147171241 + AT_rich Low_complexity Low_complexity 1 44 0 1026 289 89 42 chrX 29803130 29803722 -147170418 - L1ME3A LINE L1 -217 5936 5317 1495 273 75 20 chrX 29803727 29804141 -147169999 + LTR48B LTR ERV1 107 556 -88 1838 122 0 0 chrX 29804141 29804396 -147169744 + AluSg SINE Alu 37 291 -19 1495 273 75 20 chrX 29804396 29804491 -147169649 + LTR48B LTR ERV1 556 644 0 330 297 73 29 chrX 29804496 29804769 -147169371 - L1ME3A LINE L1 -3139 2990 2706 596 311 80 46 chrX 29804913 29805155 -147168985 - L1MEd LINE L1 -5070 1059 827 2213 101 0 13 chrX 29805155 29805453 -147168687 + AluSq SINE Alu 1 294 -19 596 311 80 46 chrX 29805453 29805679 -147168461 - L1MEd LINE L1 -5302 827 592 1418 102 0 5 chrX 29805686 29805872 -147168268 - AluSx SINE Alu -125 187 3 2402 198 0 4 chrX 29805872 29806346 -147167794 + L1PB4 LINE L1 5684 6155 -1 903 309 108 15 chrX 29806396 29806926 -147167214 - L1ME3 LINE L1 -255 5907 5329 32 26 0 0 chrX 29807010 29807049 -147167091 + AT_rich Low_complexity Low_complexity 1 39 0 611 278 0 0 chrX 29807354 29807516 -147166624 - HAL1 LINE L1 -870 1637 1476 707 248 21 16 chrX 29807565 29807807 -147166333 - HAL1 LINE L1 -1133 1374 1132 1426 141 25 0 chrX 29807895 29808137 -147166003 - L1MA6 LINE L1 -1288 4858 4611 2853 144 47 34 chrX 29808138 29809421 -147164719 + L1MA6 LINE L1 4869 6251 -49 1694 169 3 36 chrX 29809421 29809729 -147164411 + AluJo SINE Alu 1 298 -14 2853 144 47 34 chrX 29809729 29809780 -147164360 + L1MA6 LINE L1 6251 6300 0 199 254 48 16 chrX 29809880 29809943 -147164197 - MIR SINE MIR -98 164 100 182 204 41 0 chrX 29810134 29810183 -147163957 + MIR3 SINE MIR 156 206 -2 25 51 0 0 chrX 29810530 29810569 -147163571 + AT_rich Low_complexity Low_complexity 1 39 0 1864 151 17 86 chrX 29810699 29811116 -147163024 - MLT1B LTR MaLR -2 388 1 743 277 21 51 chrX 29811175 29811309 -147162831 - L1ME3A LINE L1 -213 5957 5821 1460 102 0 0 chrX 29811309 29811525 -147162615 - L1MA5A LINE L1 -4 6293 6078 743 277 21 51 chrX 29811525 29811765 -147162375 - L1ME3A LINE L1 -349 5821 5594 920 267 133 18 chrX 29811813 29812266 -147161874 + MLT1J LTR MaLR 3 507 -4 1436 129 21 135 chrX 29812383 29812723 -147161417 - AluYb8 SINE Alu -17 301 1 1059 298 37 32 chrX 29813204 29813509 -147160631 - MLT1J2 LTR MaLR -37 413 104 947 308 28 36 chrX 29813509 29813977 -147160163 + LTR16B LTR ERVL 1 464 0 1059 298 37 32 chrX 29813977 29814080 -147160060 - MLT1J2 LTR MaLR -346 104 3 334 250 4 25 chrX 29814085 29814245 -147159895 - L1ME LINE L1 -333 5829 5683 * 711 180 0 19 chrX 29814240 29814401 -147159739 + L1 LINE L1 4226 4383 -1763 21459 174 18 10 chrX 29814405 29816922 -147157218 + L1MA2 LINE L1 20 2515 -5050 2380 100 3 0 chrX 29816922 29817232 -147156908 + AluSp SINE Alu 1 311 -2 21459 174 18 10 chrX 29817232 29820701 -147153439 + L1MA2 LINE L1 2515 6056 -1509 5363 100 5 0 chrX 29820698 29821461 -147152679 + L1PA13 LINE L1 5397 6163 0 * 7083 124 41 9 chrX 29821450 29823077 -147151063 + L1MA2 LINE L1 6042 7720 -3 1341 179 13 80 chrX 29823108 29823482 -147150658 + L1 LINE L1 4377 4725 -1421 * 5436 157 12 7 chrX 29823480 29824721 -147149419 + L1PA16 LINE L1 4901 6145 -21 575 307 18 35 chrX 29824728 29824977 -147149163 - L1MC/D LINE L1 -496 5674 5439 245 321 27 9 chrX 29825396 29825508 -147148632 + (CATATA)n Simple_repeat Simple_repeat 4 117 0 219 204 0 0 chrX 29825510 29825559 -147148581 + (TG)n Simple_repeat Simple_repeat 2 50 0 275 244 0 67 chrX 29826526 29826616 -147147524 - L2 LINE L2 -1 3271 3188 1493 187 30 50 chrX 29827710 29827760 -147146380 - MLT1A2 LTR MaLR -17 357 308 2287 107 0 22 chrX 29827760 29828077 -147146063 - AluSx SINE Alu -2 310 1 1493 187 30 50 chrX 29828077 29828390 -147145750 - MLT1A2 LTR MaLR -66 308 1 721 307 8 12 chrX 29828644 29828898 -147145242 + MER90 LTR ERV1 1 253 -361 671 222 0 7 chrX 29828895 29829039 -147145101 + MER90 LTR ERV1 362 504 -110 * 2336 161 60 2 chrX 29830032 29830435 -147143705 + MSTB LTR MaLR 1 426 0 8941 165 47 4 chrX 29830435 29832018 -147142122 + MSTB-int LTR MaLR 1 1651 0 2420 165 54 2 chrX 29832018 29832423 -147141717 + MSTB LTR MaLR 1 426 0 773 239 103 4 chrX 29832454 29832688 -147141452 + MIR SINE MIR 3 259 -3 29 0 0 0 chrX 29832809 29832838 -147141302 + AT_rich Low_complexity Low_complexity 1 29 0 3863 158 59 1 chrX 29833027 29833743 -147140397 - MSTA-int LTR MaLR -894 757 1 2179 120 141 5 chrX 29833744 29834120 -147140020 - MSTA LTR MaLR -1 427 1 1159 265 65 22 chrX 29834127 29834497 -147139643 + MLT1I LTR MaLR 24 409 0 673 235 13 13 chrX 29835229 29835382 -147138758 - MER5B DNA MER1_type -6 172 20 1062 257 23 13 chrX 29835384 29835684 -147138456 - LTR16A LTR ERVL -7 443 141 2320 99 0 0 chrX 29835718 29836020 -147138120 - AluSg SINE Alu -8 302 1 22 35 0 0 chrX 29836101 29836130 -147138010 + AT_rich Low_complexity Low_complexity 1 29 0 730 256 62 50 chrX 29836148 29836406 -147137734 + MIR SINE MIR 2 262 0 2283 122 0 0 chrX 29836577 29836889 -147137251 + AluSx SINE Alu 1 312 0 1982 124 6 44 chrX 29836978 29837293 -147136847 + AluJb SINE Alu 3 305 -7 201 300 111 0 chrX 29837303 29837393 -147136747 - L2 LINE L2 -349 2923 2824 2106 221 76 73 chrX 29837407 29838199 -147135941 + MER21B LTR ERV1 12 805 -58 1389 262 11 47 chrX 29838348 29838791 -147135349 + LTR16A LTR ERVL 22 448 -2 2476 62 3 0 chrX 29839063 29839355 -147134785 + AluSc SINE Alu 1 293 -16 692 324 26 16 chrX 29839491 29839874 -147134266 - L1M4 LINE L1 -2685 3461 3075 258 32 0 0 chrX 29839931 29839962 -147134178 + (TG)n Simple_repeat Simple_repeat 2 32 0 455 300 69 46 chrX 29840091 29840484 -147133656 + L1MC/D LINE L1 4151 4552 -1594 198 118 0 0 chrX 29840500 29840534 -147133606 + (TG)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chrX 29840535 29840563 -147133577 + AT_rich Low_complexity Low_complexity 1 28 0 508 284 73 51 chrX 29840569 29841133 -147133007 + L1MC/D LINE L1 4630 5205 -941 252 295 45 9 chrX 29841736 29841848 -147132292 - HERV16 LTR ERVL -1202 3794 3679 2876 328 29 11 chrX 29841880 29842628 -147131512 - HERV16 LTR ERVL -3583 1413 631 2289 71 44 0 chrX 29842628 29842922 -147131218 + AluY SINE Alu 1 307 -4 2876 328 29 11 chrX 29842922 29843454 -147130686 - HERV16 LTR ERVL -4365 631 110 1074 243 60 13 chrX 29843558 29843875 -147130265 - LTR16B LTR ERVL -4 460 129 353 259 28 19 chrX 29844045 29844153 -147129987 - LTR67 LTR ERVL 0 557 449 630 195 0 8 chrX 29844392 29844510 -147129630 - LTR28 LTR ERV1 -903 117 1 294 295 98 9 chrX 29844584 29844696 -147129444 - LTR67 LTR ERVL -400 157 36 247 353 25 5 chrX 29844760 29844964 -147129176 + L1MC/D LINE L1 5699 5906 -1902 2630 225 78 27 chrX 29845411 29846114 -147128026 + MER21B LTR ERV1 1 739 -124 2287 98 0 3 chrX 29846626 29846922 -147127218 - AluSq SINE Alu -17 296 2 640 333 51 41 chrX 29847137 29847549 -147126591 + LTR16C LTR ERVL 76 491 0 2563 248 48 20 chrX 29850237 29851004 -147123136 - L1ME1 LINE L1 -55 6111 5323 843 163 0 0 chrX 29851013 29851166 -147122974 - L1MD1 LINE L1 -8 6234 6082 22 0 0 0 chrX 29851186 29851208 -147122932 + AT_rich Low_complexity Low_complexity 1 22 0 6026 231 45 12 chrX 29851225 29853863 -147120277 - L1MD1 LINE L1 -454 5905 3177 229 111 0 0 chrX 29854231 29854267 -147119873 + MLT1B LTR MaLR 1 36 -354 988 174 31 10 chrX 29854766 29854961 -147119179 - MER3 DNA MER1_type -10 199 1 357 221 75 79 chrX 29855200 29855454 -147118686 - L1ME4a LINE L1 -216 5905 5653 2383 178 26 5 chrX 29856073 29856490 -147117650 - MSTB LTR MaLR 0 426 1 917 157 35 12 chrX 29857093 29857265 -147116875 + MER3 DNA MER1_type 24 199 -10 755 263 59 24 chrX 29859331 29859586 -147114554 - LTR16A LTR ERVL 0 450 187 2253 85 0 3 chrX 29860562 29860866 -147113274 - AluSx SINE Alu 0 303 1 24 32 0 0 chrX 29861148 29861179 -147112961 + AT_rich Low_complexity Low_complexity 1 31 0 653 219 0 0 chrX 29861587 29861715 -147112425 - MER2 DNA MER2_type -190 155 28 845 246 127 29 chrX 29861751 29862097 -147112043 + L1M4 LINE L1 155 534 -5862 692 200 0 21 chrX 29862124 29862264 -147111876 + AluJo SINE Alu 1 137 -175 211 194 0 0 chrX 29862264 29862300 -147111840 + (TAAG)n Simple_repeat Simple_repeat 1 36 0 966 217 22 11 chrX 29862300 29862572 -147111568 + L1M4 LINE L1 570 844 -5552 3476 202 46 11 chrX 29862584 29863675 -147110465 + L1M4 LINE L1 4451 5579 -674 666 225 46 18 chrX 29863671 29863889 -147110251 + L1MEc LINE L1 1749 1972 -4424 * 688 244 93 65 chrX 29863889 29863959 -147110181 + L1MDa LINE L1 121 188 -6352 234 0 0 0 chrX 29863959 29863985 -147110155 + (TG)n Simple_repeat Simple_repeat 2 27 0 688 244 93 65 chrX 29863985 29864060 -147110080 + L1MDa LINE L1 188 259 -6281 180 0 0 0 chrX 29864060 29864080 -147110060 + (CAA)n Simple_repeat Simple_repeat 2 21 0 688 244 93 65 chrX 29864080 29864257 -147109883 + L1MDa LINE L1 259 453 -6087 596 246 87 0 chrX 29864509 29864704 -147109436 + L1MC4a LINE L1 6247 6458 -1350 471 203 48 52 chrX 29864716 29864963 -147109177 + MER58 DNA MER1_type 2 2419 -1 785 224 87 9 chrX 29864963 29865182 -147108958 + L1MC3 LINE L1 6437 6672 -1113 15275 205 12 13 chrX 29865472 29870953 -147103187 - L1PA15 LINE L1 0 6816 1328 252 0 0 0 chrX 29871036 29871064 -147103076 + (TG)n Simple_repeat Simple_repeat 1 28 0 2124 304 28 19 chrX 29871191 29871976 -147102164 - L1PA15 LINE L1 -5995 792 1 277 167 0 19 chrX 29873035 29873089 -147101051 - Tigger5 DNA MER2_type 0 2323 2271 324 171 0 110 chrX 29873102 29873184 -147100956 - Tigger5 DNA MER2_type -2248 75 3 2041 131 133 16 chrX 29873454 29873837 -147100303 - MSTA LTR MaLR 0 428 1 8295 146 10 64 chrX 29873837 29875506 -147098634 - MSTA-int LTR MaLR 0 1580 3 1473 151 96 14 chrX 29875508 29875785 -147098355 - MSTA LTR MaLR 0 428 128 1652 131 4 4 chrX 29875785 29876044 -147098096 - THE1C LTR MaLR 0 375 117 315 173 5 10 chrX 29876041 29876141 -147097999 - LTR29 LTR ERV1 -90 617 452 * 31 0 0 0 chrX 29876141 29876172 -147097968 + AT_rich Low_complexity Low_complexity 1 31 0 384 287 23 8 chrX 29876210 29876339 -147097801 - MLT1I LTR MaLR -270 139 9 314 306 63 75 chrX 29876345 29876518 -147097622 + L1 LINE L1 3422 3596 -2550 6095 90 21 3 chrX 29876518 29877740 -147096400 + L1PA13 LINE L1 4924 6161 -2 314 306 63 75 chrX 29877740 29878403 -147095737 + L1 LINE L1 3596 4248 -1898 21414 180 20 21 chrX 29878406 29879683 -147094457 + L1PA11 LINE L1 20 1296 -6316 200 35 35 0 chrX 29879683 29879712 -147094428 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 21414 180 20 21 chrX 29879712 29884322 -147089818 + L1PA11 LINE L1 1296 6983 -629 2342 81 10 0 chrX 29884322 29884618 -147089522 - AluY SINE Alu -12 299 1 21414 180 20 21 chrX 29884618 29885246 -147088894 + L1PA11 LINE L1 6983 7610 -2 464 257 116 18 chrX 29885352 29885714 -147088426 - MER34 LTR ERV1 0 585 159 2225 106 0 13 chrX 29885740 29886043 -147088097 - AluSc SINE Alu -10 299 1 2343 122 42 4 chrX 29886043 29886494 -147087646 - MER34B LTR ERV1 -32 533 1 297 282 0 0 chrX 29886562 29886640 -147087500 - MER34 LTR ERV1 -458 84 7 1064 208 14 58 chrX 29886681 29886795 -147087345 + L1ME2 LINE L1 5789 5906 -258 1826 216 92 33 chrX 29886795 29887305 -147086835 - MLT1F LTR MaLR -2 540 1 1064 208 14 58 chrX 29887305 29887537 -147086603 + L1ME2 LINE L1 5906 6120 -44 2271 105 0 0 chrX 29887557 29887853 -147086287 - AluSx SINE Alu -16 296 1 1870 131 47 7 chrX 29888004 29888279 -147085861 + AluJb SINE Alu 1 286 -26 716 268 168 18 chrX 29888335 29888823 -147085317 + L1ME3A LINE L1 5397 5957 -205 270 267 158 0 chrX 29889640 29889805 -147084335 + L1ME3A LINE L1 5731 5921 -249 611 245 6 6 chrX 29890933 29891096 -147083044 + LTR16A1 LTR ERVL 282 444 -13 1278 188 95 35 chrX 29892216 29892583 -147081557 - MLT1C LTR MaLR 0 467 79 350 318 71 47 chrX 29892620 29892916 -147081224 - LTR16A1 LTR ERVL -8 449 147 2375 104 0 0 chrX 29893052 29893350 -147080790 + AluSx SINE Alu 1 298 -14 1834 137 68 41 chrX 29893395 29893760 -147080380 + THE1C LTR MaLR 1 375 0 1341 243 93 12 chrX 29893991 29894430 -147079710 - MER66A LTR ERV1 -1 477 97 429 267 31 56 chrX 29895406 29895567 -147078573 - MIR SINE MIR -22 240 84 608 245 21 0 chrX 29895606 29895749 -147078391 - MER105 DNA DNA -42 162 17 398 248 7 41 chrX 29896228 29896373 -147077767 + Charlie7 DNA MER1_type 513 652 -1960 1406 210 92 0 chrX 29896405 29896719 -147077421 - MER2 DNA MER2_type -2 343 1 1879 161 39 6 chrX 29896735 29897071 -147077069 + MER7A DNA MER2_type 1 345 -1 226 268 21 21 chrX 29897190 29897332 -147076808 + (TA)n Simple_repeat Simple_repeat 1 142 0 719 241 86 0 chrX 29898117 29898291 -147075849 + MIR SINE MIR 47 235 -27 3277 128 48 77 chrX 29898395 29898579 -147075561 - LTR29 LTR ERV1 0 622 434 1629 175 28 7 chrX 29898579 29898865 -147075275 - AluJo SINE Alu -20 292 1 3277 128 48 77 chrX 29898865 29899197 -147074943 - LTR29 LTR ERV1 -188 434 125 2405 72 3 0 chrX 29899197 29899490 -147074650 - AluSp SINE Alu -18 295 2 3277 128 48 77 chrX 29899490 29899612 -147074528 - LTR29 LTR ERV1 -497 125 1 3430 113 11 9 chrX 29899780 29900328 -147073812 - MER34C LTR ERV1 0 585 37 367 198 42 172 chrX 29900756 29900948 -147073192 + MIR SINE MIR 96 262 0 487 279 14 27 chrX 29901427 29901574 -147072566 + MIR SINE MIR 74 218 -44 21 57 0 0 chrX 29901582 29901617 -147072523 + AT_rich Low_complexity Low_complexity 1 35 0 869 165 51 0 chrX 29901617 29901793 -147072347 - MER31A LTR ERV1 0 485 301 6863 208 4 6 chrX 29901794 29903375 -147070765 + L1 LINE L1 2285 3862 -2284 4979 148 46 114 chrX 29903384 29904686 -147069454 - MER61C-int LTR ERV1 -3577 1640 458 1968 177 11 0 chrX 29904686 29905037 -147069103 - THE1A LTR MaLR 0 355 1 4979 148 46 114 chrX 29905037 29905278 -147068862 - MER61C-int LTR ERV1 -4759 458 202 571 222 49 21 chrX 29905407 29905551 -147068589 - MER61C-int LTR ERV1 -5068 149 2 2449 125 47 21 chrX 29905551 29905974 -147068166 - MER61C LTR ERV1 0 434 1 544 271 101 23 chrX 29906069 29906160 -147067980 + MIR SINE MIR 11 93 -169 1611 189 16 45 chrX 29906160 29906536 -147067604 + MLT1A1 LTR MaLR 1 365 0 544 271 101 23 chrX 29906536 29906662 -147067478 + MIR SINE MIR 93 245 -17 873 246 101 43 chrX 29906704 29907049 -147067091 + MLT1A1 LTR MaLR 1 365 0 316 304 164 0 chrX 29907282 29907453 -147066687 + MER110 LTR ERV1 165 363 -128 2183 143 0 0 chrX 29907456 29907763 -147066377 - AluSx SINE Alu -5 307 1 1040 288 132 22 chrX 29907774 29908222 -147065918 + L2 LINE L2 2809 3305 -8 2805 77 5 11 chrX 29908268 29908643 -147065497 + THE1C LTR MaLR 3 375 0 194 214 48 0 chrX 29908825 29908867 -147065273 + L2 LINE L2 2715 2758 -556 1106 210 9 31 chrX 29908871 29909100 -147065040 + MER58A DNA MER1_type 1 224 0 2421 119 12 20 chrX 29909198 29909600 -147064540 - MER39B LTR ERV1 0 653 255 7293 48 0 0 chrX 29909607 29910887 -147063253 - L1PA5 LINE L1 0 6154 4873 616 43 0 0 chrX 29910887 29910980 -147063160 + L1P LINE L1 3211 3303 -2843 1220 133 80 49 chrX 29910980 29911243 -147062897 - MER39B LTR ERV1 -378 275 5 562 273 91 0 chrX 29911247 29911423 -147062717 + MIR SINE MIR 52 243 -19 224 274 157 20 chrX 29912162 29912315 -147061825 + MIR SINE MIR 67 240 -22 1200 254 44 24 chrX 29912663 29913174 -147060966 - MLT1E LTR MaLR -16 561 1 528 246 0 17 chrX 29913263 29913381 -147060759 + L2 LINE L2 3198 3313 0 511 227 52 34 chrX 29963898 29964061 -147010079 - L1ME LINE L1 -580 5586 5422 1829 126 36 27 chrX 29964061 29964362 -147009778 - AluJo SINE Alu -8 304 1 511 227 52 34 chrX 29964362 29964405 -147009735 - L1ME LINE L1 -744 5422 5381 717 295 11 0 chrX 29964433 29964701 -147009439 - L1ME LINE L1 -3126 3020 2750 427 308 124 49 chrX 29964865 29965251 -147008889 + L1M4 LINE L1 2779 3193 -2953 407 241 47 99 chrX 29965264 29965455 -147008685 - MLT1J2 LTR MaLR 0 450 270 355 350 6 17 chrX 29965691 29965871 -147008269 + L1M4 LINE L1 3251 3428 -2718 912 196 105 40 chrX 29965886 29966182 -147007958 - MER39 LTR ERV1 0 707 393 660 170 21 50 chrX 29966199 29966340 -147007800 + MER34C LTR ERV1 323 459 -126 1252 222 48 4 chrX 29966340 29966610 -147007530 - MER4D LTR ERV1 0 903 622 22 35 0 0 chrX 29966757 29966786 -147007354 + AT_rich Low_complexity Low_complexity 1 29 0 379 132 0 0 chrX 29966795 29966848 -147007292 + LTR23-int LTR ERV1 3732 3784 -1433 451 125 0 12 chrX 29966929 29967009 -147007131 + LTR23-int LTR ERV1 1500 1578 -3545 811 204 2 37 chrX 29967016 29967218 -147006922 + MER61E LTR ERV1 347 779 0 2858 227 54 36 chrX 29967387 29968436 -147005704 + LTR23-int LTR ERV1 756 2646 -3685 487 254 148 6 chrX 29968438 29968607 -147005533 + MER34C LTR ERV1 160 352 -233 1639 179 103 92 chrX 29968608 29968765 -147005375 + LTR23-int LTR ERV1 1169 1323 -3800 1787 161 20 17 chrX 29968765 29969063 -147005077 + AluSx SINE Alu 1 299 -13 1639 179 103 92 chrX 29969063 29969142 -147004998 + LTR23-int LTR ERV1 1323 1400 -3723 2219 111 3 0 chrX 29969142 29969439 -147004701 + AluSc SINE Alu 1 298 -11 1639 179 103 92 chrX 29969439 29969775 -147004365 + LTR23-int LTR ERV1 1400 1748 -3375 706 62 0 21 chrX 29969875 29969971 -147004169 + MER11D LTR ERVK 804 897 0 1574 180 50 0 chrX 29970013 29970169 -147003971 - AluJo SINE Alu -20 292 114 213 65 0 0 chrX 29970169 29970200 -147003940 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1574 180 50 0 chrX 29970200 29970321 -147003819 - AluJo SINE Alu -198 114 1 1740 83 0 0 chrX 29970657 29970873 -147003267 + AluSc SINE Alu 84 299 -10 594 220 15 8 chrX 29971772 29971904 -147002236 + MER94 DNA DNA 1 133 -1 8535 104 16 37 chrX 29972792 29973207 -147000933 + HSMAR2 DNA Mariner 1 423 -879 1965 111 117 27 chrX 29973207 29973541 -147000599 + THE1B LTR MaLR 1 364 0 12149 76 8 1 chrX 29973541 29975110 -146999030 + THE1B-int LTR MaLR 1 1580 0 2372 127 8 24 chrX 29975110 29975480 -146998660 + THE1B LTR MaLR 1 364 0 8535 104 16 37 chrX 29975480 29976142 -146997998 + HSMAR2 DNA Mariner 421 1095 -207 1672 174 7 14 chrX 29976142 29976423 -146997717 + AluJo SINE Alu 4 282 -30 207 0 0 0 chrX 29976426 29976449 -146997691 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 8535 104 16 37 chrX 29976449 29976693 -146997447 + HSMAR2 DNA Mariner 1097 1301 -1 1890 202 8 11 chrX 29977348 29977714 -146996426 - MLT1A1 LTR MaLR 0 365 1 293 305 36 24 chrX 29977888 29978076 -146996064 - MLT1I LTR MaLR 0 422 267 2023 233 89 43 chrX 29979707 29980313 -146993827 + MER21B LTR ERV1 19 652 -211 316 241 49 28 chrX 29980604 29980712 -146993428 + MER5A DNA MER1_type 70 189 0 361 219 79 72 chrX 29981703 29981968 -146992172 + HAL1 LINE L1 848 1114 -1393 1841 94 11 11 chrX 29982263 29982528 -146991612 - L1PA11 LINE L1 0 6174 5910 1031 211 68 48 chrX 29982580 29982935 -146991205 + L1M1 LINE L1 3251 3612 -3953 * 2618 29 0 0 chrX 29982927 29983240 -146990900 - L1HS LINE L1 -1081 5065 4753 7810 9 3 2 chrX 29983240 29984316 -146989824 + L1HS LINE L1 5063 6139 -16 266 98 20 0 chrX 29984316 29984367 -146989773 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 225 0 0 0 chrX 29984504 29984529 -146989611 + (A)n Simple_repeat Simple_repeat 1 25 0 12346 186 33 22 chrX 29984529 29986028 -146988112 + L1MDa LINE L1 2570 4051 -2489 186 71 0 0 chrX 29986028 29986056 -146988084 + (CAA)n Simple_repeat Simple_repeat 3 30 0 12346 186 33 22 chrX 29986056 29986139 -146988001 + L1MDa LINE L1 4051 4132 -2408 1886 141 61 3 chrX 29986139 29986465 -146987675 + L1PB3 LINE L1 5803 6147 -7 12346 186 33 22 chrX 29986465 29987695 -146986445 + L1MDa LINE L1 4132 5411 -1129 4463 49 0 0 chrX 29987694 29988246 -146985894 - L1P LINE L1 -1191 4955 4404 * 486 254 124 64 chrX 29988799 29989255 -146984885 - L1MC5 LINE L1 -58 7903 7397 2008 143 42 66 chrX 29989255 29989681 -146984459 + MER47B DNA MER2_type 3 418 0 486 254 124 64 chrX 29989681 29989853 -146984287 - L1MC5 LINE L1 -564 7397 7237 351 0 0 0 chrX 29990640 29990679 -146983461 + (CA)n Simple_repeat Simple_repeat 1 39 0 2043 165 32 54 chrX 29991319 29991761 -146982379 + MSTB1 LTR MaLR 1 432 0 644 74 11 0 chrX 29992177 29992272 -146981868 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1968 121 50 0 chrX 29992328 29992609 -146981531 + AluSq SINE Alu 1 295 -18 794 215 83 68 chrX 29992798 29993245 -146980895 - L1MC5 LINE L1 -34 7927 7471 2049 123 10 0 chrX 29993245 29993547 -146980593 - AluSx SINE Alu -7 305 1 794 215 83 68 chrX 29993547 29993568 -146980572 - L1MC5 LINE L1 -490 7471 7452 22 56 0 0 chrX 29993693 29993729 -146980411 + AT_rich Low_complexity Low_complexity 1 36 0 416 192 0 0 chrX 29993788 29993861 -146980279 + MER116 DNA Mariner 3 75 -5 792 254 0 0 chrX 29993900 29994085 -146980055 + L1MC5 LINE L1 6643 6827 -1134 26 0 0 0 chrX 29994738 29994764 -146979376 + AT_rich Low_complexity Low_complexity 1 26 0 301 217 80 94 chrX 29995223 29995361 -146978779 - HAL1 LINE L1 -1229 1278 1143 1803 181 47 49 chrX 29995473 29995779 -146978361 + MER31B LTR ERV1 38 344 -122 2066 152 6 3 chrX 29995779 29996134 -146978006 - MER46B DNA MER2_type -1 235 5 1803 181 47 49 chrX 29996134 29996257 -146977883 + MER31B LTR ERV1 344 466 0 199 204 23 0 chrX 29997660 29997704 -146976436 - MIR SINE MIR -121 141 97 5938 155 21 35 chrX 29997862 29999999 -146974141 + L1MA8 LINE L1 5068 6678 -7 313 113 0 0 chrX 30000101 30000154 -146973986 + L1MA8 LINE L1 6236 6288 -3 15485 171 44 9 chrX 30000163 30004564 -146969576 + L1PBa LINE L1 1 4555 -2307 2621 59 0 12 chrX 30004664 30005002 -146969138 + L1PA8A LINE L1 5798 6131 0 2275 109 42 25 chrX 30007509 30007867 -146966273 - THE1B LTR MaLR 0 364 1 796 211 67 39 chrX 30008441 30008649 -146965491 + MIR SINE MIR 49 262 0 180 0 0 0 chrX 30009006 30009026 -146965114 + (TG)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chrX 30010278 30010298 -146963842 + (CAA)n Simple_repeat Simple_repeat 2 21 0 468 329 20 0 chrX 30010579 30010731 -146963409 + MLT1F LTR MaLR 388 542 0 388 298 116 6 chrX 30010731 30010912 -146963228 + MLT1F1-int LTR MaLR 1 201 -1170 1011 167 17 103 chrX 30010952 30011120 -146963020 - AluJo SINE Alu -15 297 153 221 0 0 33 chrX 30011120 30011150 -146962990 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1011 167 17 103 chrX 30011150 30011214 -146962926 - AluJo SINE Alu -159 153 85 787 258 40 20 chrX 30011214 30011466 -146962674 + MLT1F1-int LTR MaLR 345 601 -770 983 309 78 67 chrX 30011711 30012367 -146961773 + MLT1F1-int LTR MaLR 704 1366 -5 1791 253 58 17 chrX 30012372 30012906 -146961234 + MLT1F1 LTR MaLR 1 559 -8 1759 213 229 26 chrX 30012915 30013492 -146960648 + MER39 LTR ERV1 12 705 -2 25 0 0 0 chrX 30013510 30013535 -146960605 + AT_rich Low_complexity Low_complexity 1 25 0 663 306 102 44 chrX 30013545 30014253 -146959887 + L1M4 LINE L1 2211 2877 -3269 2818 73 92 5 chrX 30014253 30014665 -146959475 + LTR7 LTR ERV1 1 448 -2 663 306 102 44 chrX 30014665 30015537 -146958603 + L1M4 LINE L1 2877 3933 -2213 25 51 0 0 chrX 30015611 30015650 -146958490 + AT_rich Low_complexity Low_complexity 1 39 0 687 276 110 33 chrX 30016714 30017051 -146957089 + MER34C LTR ERV1 1 363 -222 383 280 116 94 chrX 30017340 30017712 -146956428 + MLT1H LTR MaLR 168 547 -2 2077 147 0 0 chrX 30017732 30018044 -146956096 + AluJo SINE Alu 1 312 0 463 286 14 29 chrX 30018405 30018545 -146955595 - L2 LINE L2 -272 3041 2904 2394 90 0 0 chrX 30019337 30019637 -146954503 + AluSc SINE Alu 1 300 -9 24 0 0 0 chrX 30019666 30019690 -146954450 + AT_rich Low_complexity Low_complexity 1 24 0 2281 75 0 26 chrX 30020076 30020384 -146953756 + AluY SINE Alu 12 311 0 25 51 0 0 chrX 30020531 30020570 -146953570 + AT_rich Low_complexity Low_complexity 1 39 0 1682 162 10 27 chrX 30022395 30022692 -146951448 - AluJo SINE Alu -20 292 1 457 230 191 51 chrX 30022795 30023052 -146951088 - L1MC4 LINE L1 -272 7770 7478 2147 136 0 7 chrX 30023126 30023435 -146950705 - AluSq SINE Alu -6 307 1 3241 205 18 29 chrX 30023458 30024230 -146949910 + MER97a DNA MER1_type? 118 881 -13 1919 162 46 14 chrX 30024276 30024627 -146949513 - LOR1b LTR ERV1 0 461 100 1370 268 55 81 chrX 30024692 30025511 -146948629 - L2 LINE L2 0 3313 2516 1450 251 79 24 chrX 30025834 30026340 -146947800 - L1ME3A LINE L1 -3 6167 5634 1826 117 37 0 chrX 30026468 30026741 -146947399 - MER49 LTR ERV1 -640 283 1 754 112 48 8 chrX 30026741 30026866 -146947274 + MER34C LTR ERV1 456 585 0 357 369 60 4 chrX 30026920 30027188 -146946952 - L1ME3A LINE L1 -224 6015 5733 353 248 87 31 chrX 30027198 30027359 -146946781 + LTR68 LTR ERV1 8 177 -563 539 296 65 30 chrX 30027782 30028446 -146945694 - L1ME3A LINE L1 -517 5716 5033 315 0 0 0 chrX 30028707 30028742 -146945398 + (TG)n Simple_repeat Simple_repeat 1 35 0 * 324 0 0 0 chrX 30028741 30028777 -146945363 + (GA)n Simple_repeat Simple_repeat 1 36 0 470 288 106 49 chrX 30029093 30029642 -146944498 - L1ME3A LINE L1 -1216 4999 4420 826 350 68 14 chrX 30029642 30030082 -146944058 + LTR16B LTR ERVL 1 464 0 2411 329 26 13 chrX 30030516 30030701 -146943439 + HERV16 LTR ERVL 469 650 -4346 937 55 86 0 chrX 30030701 30030829 -146943311 + MER85 DNA T2_type 1 139 0 2411 329 26 13 chrX 30030829 30031558 -146942582 + HERV16 LTR ERVL 650 1395 -3601 408 313 72 19 chrX 30032140 30032432 -146941708 - L1ME3A LINE L1 -1038 1538 1237 2730 186 141 19 chrX 30032770 30033467 -146940673 + LTR48 LTR ERV1 1 782 -5 3324 156 10 21 chrX 30033618 30034210 -146939930 + MER34C LTR ERV1 1 585 0 412 240 39 78 chrX 30034435 30034520 -146939620 - L1ME3A LINE L1 -177 5993 5906 2809 174 131 13 chrX 30034520 30035152 -146938988 - MER39 LTR ERV1 0 707 1 412 240 39 78 chrX 30035152 30035169 -146938971 - L1ME3A LINE L1 -264 5906 5890 1163 210 114 50 chrX 30035169 30035512 -146938628 - MLT1A1 LTR MaLR 0 365 1 412 240 39 78 chrX 30035512 30035612 -146938528 - L1ME3A LINE L1 -280 5890 5798 1478 187 28 3 chrX 30035612 30035895 -146938245 + MLT1A1 LTR MaLR 1 290 -75 419 284 24 0 chrX 30035895 30036022 -146938118 - L1ME3A LINE L1 -544 5626 5497 * 754 281 15 0 chrX 30036018 30036221 -146937919 - L1ME LINE L1 -534 5636 5431 3209 216 33 31 chrX 30036229 30036752 -146937388 - L1ME1 LINE L1 -50 6185 5665 1771 110 103 15 chrX 30036752 30037025 -146937115 + AluSg SINE Alu 1 297 -13 3209 216 33 31 chrX 30037025 30037503 -146936637 - L1ME1 LINE L1 -570 5665 5186 3139 44 65 30 chrX 30037503 30037932 -146936208 - MLT2A1 LTR ERVL 0 444 1 3209 216 33 31 chrX 30037932 30038064 -146936076 - L1ME1 LINE L1 -1049 5186 5056 2571 231 30 52 chrX 30038071 30038876 -146935264 - L1ME1 LINE L1 -5576 820 34 229 239 53 18 chrX 30038870 30038983 -146935157 - L1ME LINE L1 -2378 5430 5314 * 434 276 108 84 chrX 30040062 30040276 -146933864 - MLT1H LTR MaLR -16 533 315 656 215 67 77 chrX 30040288 30040497 -146933643 - LTR48B LTR ERV1 0 644 438 2311 124 41 41 chrX 30040504 30040793 -146933347 + LTR23 LTR ERV1 1 292 -145 1853 134 4 0 chrX 30040793 30041062 -146933078 + AluSq SINE Alu 44 313 0 2311 124 41 41 chrX 30041062 30041209 -146932931 + LTR23 LTR ERV1 291 437 0 3340 128 23 15 chrX 30041927 30042449 -146931691 + MER61E LTR ERV1 1 526 -43 6064 229 81 72 chrX 30042482 30045225 -146928915 + HUERS-P3b LTR ERV1 37 870 -4347 4081 175 1 13 chrX 30045235 30045925 -146928215 - LTR8 LTR ERV1 -9 682 1 7620 150 29 36 chrX 30045925 30048947 -146925193 + HUERS-P3b LTR ERV1 868 5175 -450 907 206 38 5 chrX 30048950 30049134 -146925006 + HUERS-P3 LTR ERV1 8730 8919 0 2387 106 52 3 chrX 30049134 30049483 -146924657 + MER61E LTR ERV1 1 366 -203 2000 124 3 24 chrX 30049485 30049776 -146924364 + AluSx SINE Alu 1 285 -27 518 194 106 17 chrX 30049901 30050081 -146924059 + LTR23-int LTR ERV1 1726 1921 -3202 1019 197 98 26 chrX 30050121 30050355 -146923785 - MSTA LTR MaLR -177 251 1 8698 164 67 28 chrX 30050355 30050611 -146923529 + LTR23-int LTR ERV1 2157 2402 -3929 2661 94 8 3 chrX 30050611 30050972 -146923168 + THE1B LTR MaLR 1 363 -1 8698 164 67 28 chrX 30050972 30051370 -146922770 + LTR23-int LTR ERV1 2402 2783 -3548 2213 93 37 0 chrX 30051370 30051670 -146922470 - AluSq SINE Alu 0 313 3 8698 164 67 28 chrX 30051670 30053240 -146920900 + LTR23-int LTR ERV1 2783 5669 -662 629 195 0 8 chrX 30053253 30053376 -146920764 + LTR23-int LTR ERV1 4784 4905 -218 2233 148 38 23 chrX 30053490 30053917 -146920223 + LTR23 LTR ERV1 4 436 -1 634 214 60 38 chrX 30053918 30054249 -146919891 - LTR48B LTR ERV1 -214 573 1 375 290 14 14 chrX 30054379 30054517 -146919623 - MLT1H LTR MaLR -389 160 23 3237 148 22 55 chrX 30054521 30055143 -146918997 - LTR29 LTR ERV1 -20 602 1 2870 170 33 95 chrX 30055329 30056066 -146918074 + LTR8 LTR ERV1 1 691 0 2173 124 0 3 chrX 30056311 30056617 -146917523 + AluSg SINE Alu 1 305 -5 21 36 0 0 chrX 30056634 30056662 -146917478 + AT_rich Low_complexity Low_complexity 1 28 0 257 284 0 87 chrX 30057578 30057705 -146916435 - HAL1b LINE L1 -869 479 364 845 295 136 30 chrX 30057856 30058320 -146915820 - LTR33 LTR ERVL 0 521 9 1911 190 31 39 chrX 30059181 30059500 -146914640 + MLT2D LTR ERVL 2 322 -92 1832 170 28 25 chrX 30059500 30059864 -146914276 + MLT1A1 LTR MaLR 1 365 0 1911 190 31 39 chrX 30059864 30059921 -146914219 + MLT2D LTR ERVL 322 377 -37 279 79 0 0 chrX 30059921 30059959 -146914181 + (CA)n Simple_repeat Simple_repeat 2 39 0 1911 190 31 39 chrX 30059959 30059997 -146914143 + MLT2D LTR ERVL 377 414 0 431 263 36 7 chrX 30060524 30060661 -146913479 - LTR16C LTR ERVL 0 491 351 1623 207 66 35 chrX 30060664 30061151 -146912989 - MLT1D LTR MaLR 0 505 4 420 193 45 0 chrX 30061216 30061304 -146912836 - MLT2F LTR ERVL -571 92 1 823 193 84 92 chrX 30061304 30061697 -146912443 - ERVL-F LTR ERVL -8 5756 5367 1859 197 22 17 chrX 30061709 30062069 -146912071 + LTR49-int LTR ERV1 484 845 -5486 2179 116 10 54 chrX 30062102 30062370 -146911770 + LTR49-int LTR ERV1 842 1089 -5242 2456 85 3 0 chrX 30062370 30062677 -146911463 + AluSx SINE Alu 1 308 -4 2179 116 10 54 chrX 30062677 30062797 -146911343 + LTR49-int LTR ERV1 1089 1213 -5118 384 261 0 0 chrX 30062797 30062866 -146911274 + tRNA-Glu-GAG tRNA tRNA 7 75 0 484 137 0 11 chrX 30062919 30063014 -146911126 + LTR48B-int LTR ERV1 1290 1383 -4948 969 118 13 7 chrX 30063127 30063279 -146910861 + LTR48B-int LTR ERV1 1377 1529 -4802 511 112 22 0 chrX 30063279 30063368 -146910772 + G-rich Low_complexity Low_complexity 4 94 0 659 20 40 20 chrX 30063372 30063473 -146910667 + (GAAA)n Simple_repeat Simple_repeat 2 104 0 9223 131 21 35 chrX 30063475 30065062 -146909078 + LTR48B-int LTR ERV1 1528 3091 -3240 476 115 11 0 chrX 30065053 30065140 -146909000 + LTR48B-int LTR ERV1 4296 4383 -1948 * 7518 164 20 13 chrX 30065149 30066748 -146907392 + LTR48B-int LTR ERV1 4510 6164 -167 1098 217 9 5 chrX 30066845 30067057 -146907083 + LTR48B LTR ERV1 1 213 -431 226 146 73 0 chrX 30068476 30068517 -146905623 + MLT1J LTR MaLR 109 152 -359 1123 211 136 19 chrX 30068521 30068881 -146905259 - LTR48B LTR ERV1 0 644 243 1371 250 91 62 chrX 30069578 30070413 -146903727 + L2 LINE L2 2464 3307 -6 2012 256 136 6 chrX 30070999 30071537 -146902603 + MLT2F LTR ERVL 1 608 -55 1002 128 47 90 chrX 30071599 30071810 -146902330 + MER20 DNA MER1_type 1 202 -17 5985 266 60 33 chrX 30071893 30072082 -146902058 + ERVL-F LTR ERVL 2 184 -5580 715 195 158 62 chrX 30072082 30072482 -146901658 + LTR21B LTR ERV1 1 438 0 5985 266 60 33 chrX 30072482 30073257 -146900883 + ERVL-F LTR ERVL 184 936 -4828 1485 162 71 81 chrX 30073257 30073651 -146900489 - MLT1B LTR MaLR 0 390 1 5985 266 60 33 chrX 30073651 30074088 -146900052 + ERVL-F LTR ERVL 936 1360 -4404 2429 182 24 4 chrX 30074088 30074544 -146899596 + MLT1C LTR MaLR 3 467 0 5985 266 60 33 chrX 30074544 30075359 -146898781 + ERVL-F LTR ERVL 1360 2351 -3413 348 225 0 0 chrX 30075365 30075436 -146898704 + MLT1E LTR MaLR 75 145 -448 1571 217 108 35 chrX 30075450 30075856 -146898284 + MLT1E LTR MaLR 114 549 -44 722 303 64 47 chrX 30076359 30076660 -146897480 + L1MEd LINE L1 844 1138 -5258 2370 42 3 17 chrX 30076660 30076972 -146897168 + AluY SINE Alu 1 308 0 722 303 64 47 chrX 30076972 30077399 -146896741 + L1MEd LINE L1 1138 1645 -4751 1403 167 9 123 chrX 30077399 30077740 -146896400 + AluJo SINE Alu 1 302 0 722 303 64 47 chrX 30077740 30077861 -146896279 + L1MEd LINE L1 1645 1762 -4634 22 0 0 0 chrX 30077916 30077938 -146896202 + AT_rich Low_complexity Low_complexity 1 22 0 541 335 34 44 chrX 30078049 30078345 -146895795 - MLT1I LTR MaLR -19 390 98 1075 259 79 10 chrX 30078649 30079147 -146894993 + L1MEd LINE L1 2113 2599 -3616 216 0 0 0 chrX 30079251 30079275 -146894865 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 177 3 0 chrX 30079285 30079573 -146894567 - AluJb SINE Alu -23 289 1 26 50 0 0 chrX 30080230 30080270 -146893870 + AT_rich Low_complexity Low_complexity 1 40 0 260 246 8 51 chrX 30080546 30080664 -146893476 + HAL1b LINE L1 318 430 -918 21 0 0 0 chrX 30080978 30080999 -146893141 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chrX 30082991 30083035 -146891105 + AT_rich Low_complexity Low_complexity 1 44 0 260 70 23 0 chrX 30083186 30083229 -146890911 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1910 112 106 124 chrX 30084235 30084671 -146889469 + MSTA LTR MaLR 1 428 0 881 281 63 1 chrX 30084685 30085060 -146889080 + MLT1H LTR MaLR 129 547 -2 345 62 0 0 chrX 30086631 30086679 -146887461 + (TG)n Simple_repeat Simple_repeat 2 49 0 860 344 65 34 chrX 30087066 30087832 -146886308 - L2 LINE L2 -4 3309 2521 23829 143 16 15 chrX 30087856 30092673 -146881467 - L1MA3 LINE L1 -6 7718 2878 186 43 0 0 chrX 30092673 30092696 -146881444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 23829 143 16 15 chrX 30092696 30095567 -146878573 - L1MA3 LINE L1 -4846 2878 13 372 305 93 61 chrX 30095569 30095815 -146878325 - L2 LINE L2 -814 2500 2247 1003 274 121 40 chrX 30096114 30096570 -146877570 + L2 LINE L2 125 617 -2697 276 288 90 0 chrX 30096583 30096694 -146877446 + L2 LINE L2 837 957 -2357 199 345 14 42 chrX 30096697 30096839 -146877301 + L2 LINE L2 1239 1376 -1938 1090 280 61 53 chrX 30097024 30097670 -146876470 + L2 LINE L2 2661 3313 0 274 388 33 0 chrX 30097725 30097877 -146876263 - L2 LINE L2 -926 2388 2232 2231 186 60 25 chrX 30097887 30098371 -146875769 - MLT1D LTR MaLR -2 503 3 209 321 45 70 chrX 30098415 30098658 -146875482 - L2 LINE L2 -1232 2082 1846 480 200 0 0 chrX 30099399 30099484 -146874656 + MIR SINE MIR 71 155 -107 590 246 128 11 chrX 30099548 30099727 -146874413 - MIR SINE MIR 0 262 63 1411 143 0 74 chrX 30099936 30100131 -146874009 + MSTB LTR MaLR 1 176 -250 2421 81 0 3 chrX 30100131 30100438 -146873702 + AluY SINE Alu 1 306 -5 1411 143 0 74 chrX 30100438 30100486 -146873654 + MSTB LTR MaLR 176 226 -200 1268 155 15 19 chrX 30100487 30100693 -146873447 - AluJo SINE Alu -13 299 95 248 310 14 0 chrX 30100722 30100793 -146873347 + LTR33 LTR ERVL 150 221 -300 591 259 44 34 chrX 30100825 30101030 -146873110 + LTR33 LTR ERVL 307 513 -8 234 307 130 61 chrX 30101727 30101958 -146872182 + MIR SINE MIR 16 262 0 2714 7 3 10 chrX 30102881 30103186 -146870954 - AluYa5 SINE Alu -8 303 1 782 255 50 13 chrX 30103293 30103557 -146870583 + LTR16A1 LTR ERVL 195 451 -6 217 402 21 0 chrX 30103620 30103717 -146870423 - L2 LINE L2 -223 3049 2951 272 291 96 10 chrX 30103743 30103858 -146870282 + MIR SINE MIR 8 130 -78 4893 129 18 0 chrX 30103871 30104655 -146869485 - L1MA4 LINE L1 -12 7707 6910 491 72 63 0 chrX 30104657 30104768 -146869372 + (TA)n Simple_repeat Simple_repeat 2 119 0 1809 148 3 44 chrX 30104769 30105261 -146868879 - L1MA4 LINE L1 -743 6822 6427 7518 30 5 0 chrX 30105261 30106455 -146867685 - L1PA5 LINE L1 -5 6149 4955 8655 49 2 0 chrX 30106455 30107525 -146866615 + L1PA5 LINE L1 3884 4955 -1191 * 12557 189 35 24 chrX 30107524 30108757 -146865383 - L1MA4 LINE L1 -1129 6436 5217 1886 141 61 3 chrX 30108757 30109083 -146865057 - L1PB3 LINE L1 -7 6147 5803 12557 189 35 24 chrX 30109083 30109166 -146864974 - L1MA4 LINE L1 -2348 5217 5136 186 71 0 0 chrX 30109166 30109194 -146864946 + (TTG)n Simple_repeat Simple_repeat 3 30 0 12557 189 35 24 chrX 30109194 30111028 -146863112 - L1MA4 LINE L1 -2429 5136 3251 1834 103 11 15 chrX 30111072 30111345 -146862795 + L1PA11 LINE L1 5903 6174 0 361 219 79 72 chrX 30111640 30111905 -146862235 - HAL1 LINE L1 -1393 1114 848 371 270 48 40 chrX 30112896 30113022 -146861118 - MER5A DNA MER1_type 0 189 63 781 206 26 5 chrX 30113028 30113222 -146860918 - L1MC2 LINE L1 -11 6333 6136 2033 148 88 3 chrX 30113222 30113580 -146860560 - L1MC3 LINE L1 -193 7592 7204 295 225 45 22 chrX 30113580 30113669 -146860471 - MLT1F1 LTR MaLR -434 133 43 279 170 38 0 chrX 30113789 30113842 -146860298 + MER5B DNA MER1_type 123 177 -1 206 231 0 0 chrX 30115784 30115823 -146858317 + (CA)n Simple_repeat Simple_repeat 1 39 0 327 331 115 0 chrX 30116816 30116955 -146857185 - LTR67 LTR ERVL -367 190 36 2065 129 13 10 chrX 30117008 30117317 -146856823 + AluSx SINE Alu 1 310 -2 268 281 67 52 chrX 30117879 30118014 -146856126 - L2 LINE L2 -4 3268 3132 508 176 69 0 chrX 30118184 30118286 -146855854 + L1MC4 LINE L1 7925 8033 -9 25 0 0 0 chrX 30118752 30118777 -146855363 + AT_rich Low_complexity Low_complexity 1 25 0 189 74 0 0 chrX 30119552 30119579 -146854561 + (T)n Simple_repeat Simple_repeat 1 27 0 962 146 61 0 chrX 30119822 30119987 -146854153 + MER20 DNA MER1_type 45 219 0 1699 161 20 10 chrX 30120083 30120375 -146853765 - AluJb SINE Alu -17 295 1 1143 177 149 46 chrX 30120815 30121143 -146852997 + MLT1A1 LTR MaLR 4 365 0 22 0 0 0 chrX 30121638 30121660 -146852480 + AT_rich Low_complexity Low_complexity 1 22 0 42810 30 23 1 chrX 30121666 30127667 -146846473 - L1PA2 LINE L1 -2 6153 22 1599 303 82 42 chrX 30129239 30130132 -146844008 + L2 LINE L2 2147 3080 -233 451 301 114 88 chrX 30130445 30130709 -146843431 - MLT1J LTR MaLR 0 511 228 5439 136 21 9 chrX 30130709 30131938 -146842202 + L1PA16 LINE L1 4932 6166 0 451 301 114 88 chrX 30131938 30132148 -146841992 - MLT1J LTR MaLR -283 228 25 418 347 33 50 chrX 30132238 30132480 -146841660 + L2 LINE L2 2853 3090 -182 450 247 73 0 chrX 30132617 30132741 -146841399 - MIR SINE MIR -61 147 63 210 71 0 0 chrX 30132792 30132820 -146841320 + (T)n Simple_repeat Simple_repeat 1 28 0 1016 196 5 11 chrX 30132849 30133038 -146841102 + MER58A DNA MER1_type 37 224 0 299 268 72 31 chrX 30133269 30133366 -146840774 + MIR SINE MIR 151 251 -11 970 266 18 4 chrX 30135685 30135914 -146838226 + MIR SINE MIR 2 233 -29 1768 181 42 13 chrX 30136215 30136596 -146837544 - L1ME1 LINE L1 -5 6161 5770 217 103 0 0 chrX 30137138 30137167 -146836973 - L3 LINE CR1 -1281 296 268 1851 174 0 3 chrX 30138362 30138656 -146835484 - AluJb SINE Alu -19 293 1 2512 273 40 9 chrX 30138882 30140089 -146834051 + L1ME1 LINE L1 41 1333 -5063 2042 197 37 17 chrX 30140127 30140664 -146833476 + L1ME1 LINE L1 1919 2466 -3930 1677 238 4 84 chrX 30140646 30140770 -146833370 + L1ME1 LINE L1 5712 5844 -391 * 19301 34 1 11 chrX 30140770 30143896 -146830244 + L1PA4 LINE L1 3024 6152 -3 1677 238 4 84 chrX 30143896 30144333 -146829807 + L1ME1 LINE L1 5844 6228 -7 438 20 0 0 chrX 30144493 30144544 -146829596 + (CA)n Simple_repeat Simple_repeat 2 52 0 385 270 17 9 chrX 30146763 30146878 -146827262 + MIR SINE MIR 39 154 -108 840 227 25 0 chrX 30147063 30147226 -146826914 + MER5A DNA MER1_type 14 180 -9 1047 336 32 14 chrX 30149207 30149647 -146824493 - HERV16 LTR ERVL -4502 494 47 748 327 33 20 chrX 30149675 30150101 -146824039 - LTR16A LTR ERVL 0 450 1 290 227 67 8 chrX 30150130 30150297 -146823843 + L1M3 LINE L1 5313 5456 -712 2194 127 0 0 chrX 30150306 30150606 -146823534 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 30150612 30150635 -146823505 + AT_rich Low_complexity Low_complexity 1 23 0 1008 254 41 43 chrX 30150761 30151226 -146822914 + L1ME LINE L1 4563 5026 -1120 839 173 101 12 chrX 30151242 30151410 -146822730 + MER3 DNA MER1_type 2 184 -25 338 297 8 23 chrX 30151482 30151610 -146822530 + MLT2F LTR ERVL 16 141 -522 548 140 0 5 chrX 30151619 30151733 -146822407 + MLT1E3 LTR MaLR 51 209 -445 281 254 0 0 chrX 30151741 30151796 -146822344 + Tigger5 DNA MER2_type 1 55 -2268 423 193 45 0 chrX 30151801 30151889 -146822251 + Tigger5 DNA MER2_type 2231 2322 -1 818 233 109 77 chrX 30152200 30152657 -146821483 + L1ME LINE L1 5102 5574 -596 453 19 0 0 chrX 30152668 30152722 -146821418 + (TG)n Simple_repeat Simple_repeat 2 55 0 839 237 14 40 chrX 30152722 30153000 -146821140 - L1M4 LINE L1 -1007 5139 4869 2971 103 9 14 chrX 30154564 30155000 -146819140 - MER57B LTR ERV1 0 434 1 182 299 47 47 chrX 30155175 30155282 -146818858 - MIR SINE MIR -10 252 146 286 277 10 0 chrX 30155480 30155581 -146818559 + L1 LINE L1 3876 3977 -2169 553 256 41 32 chrX 30155696 30155910 -146818230 - MIR SINE MIR -12 250 39 305 309 36 12 chrX 30155933 30156101 -146818039 + L1 LINE L1 4024 4195 -1951 1975 216 45 11 chrX 30156253 30156720 -146817420 - MER90 LTR ERV1 0 575 93 1719 227 139 13 chrX 30156726 30157202 -146816938 - MER34 LTR ERV1 -6 536 1 333 88 275 75 chrX 30157202 30157282 -146816858 - MER90 LTR ERV1 -479 96 1 442 317 31 0 chrX 30157350 30157511 -146816629 + L1ME3A LINE L1 5989 6154 -16 44 20 0 0 chrX 30157513 30157564 -146816576 + AT_rich Low_complexity Low_complexity 1 51 0 588 305 58 74 chrX 30157651 30157802 -146816338 - L2 LINE L2 -1145 2169 2017 2298 214 20 18 chrX 30157802 30158306 -146815834 + MLT1D LTR MaLR 1 505 0 588 305 58 74 chrX 30158306 30158329 -146815811 - L2 LINE L2 -1297 2017 1995 2086 129 7 0 chrX 30158329 30158632 -146815508 - AluSx SINE Alu -2 310 6 588 305 58 74 chrX 30158632 30158820 -146815320 - L2 LINE L2 -1319 1995 1812 195 379 15 0 chrX 30160721 30160787 -146813353 - L2 LINE L2 -5 3308 3242 249 313 84 67 chrX 30160827 30161006 -146813134 + L2 LINE L2 3083 3264 -8 22 0 0 0 chrX 30161033 30161055 -146813085 + AT_rich Low_complexity Low_complexity 1 22 0 2080 109 10 23 chrX 30163892 30164195 -146809945 - AluSg SINE Alu -11 299 1 1306 266 80 39 chrX 30164208 30164696 -146809444 - LTR33 LTR ERVL -13 508 1 331 263 44 9 chrX 30164898 30165012 -146809128 - L1M4 LINE L1 -3792 2852 2735 282 89 44 0 chrX 30165624 30165669 -146808471 + L1P2 LINE L1 5395 5441 -713 386 189 0 0 chrX 30166060 30166134 -146808006 - L1M4 LINE L1 -4590 2056 1983 4239 184 16 8 chrX 30166137 30166960 -146807180 - L1MB8 LINE L1 0 6178 5350 * 6714 217 32 27 chrX 30166957 30167453 -146806687 - L1M4 LINE L1 -4645 2001 1509 1918 181 0 0 chrX 30167453 30167763 -146806377 - AluJb SINE Alu -2 310 1 6714 217 32 27 chrX 30167763 30168393 -146805747 - L1M4 LINE L1 -5137 1509 883 2256 110 3 0 chrX 30168393 30168692 -146805448 + AluSx SINE Alu 1 300 -12 6714 217 32 27 chrX 30168692 30169535 -146804605 - L1M4 LINE L1 -5763 883 10 1111 278 33 36 chrX 30169841 30170079 -146804061 - LTR16C LTR ERVL 0 491 253 1995 121 68 6 chrX 30170079 30170402 -146803738 + MER61A LTR ERV1 1 343 0 1111 278 33 36 chrX 30170402 30170497 -146803643 - LTR16C LTR ERVL -238 253 159 382 297 104 15 chrX 30170639 30170908 -146803232 - HAL1b LINE L1 -570 778 486 1625 194 88 51 chrX 30170982 30171416 -146802724 + MLT1C LTR MaLR 18 467 0 1226 267 5 38 chrX 30172164 30172531 -146801609 + L1MB7 LINE L1 24 378 -6164 8439 231 39 31 chrX 30172540 30175132 -146799008 + L1MB7 LINE L1 3112 5724 -920 5807 111 9 3 chrX 30175133 30176007 -146798133 - Tigger3b DNA MER2_type -7 1224 346 2567 134 47 5 chrX 30176007 30176429 -146797711 + MSTB1 LTR MaLR 1 432 0 1991 160 8 47 chrX 30176430 30176793 -146797347 - Tigger3b DNA MER2_type -882 349 1 3789 184 30 45 chrX 30176815 30177751 -146796389 + L1MB7 LINE L1 5752 6673 -9 212 216 20 0 chrX 30178222 30178273 -146795867 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 2433 89 0 0 chrX 30178940 30179253 -146794887 - AluSq SINE Alu 0 313 1 29 28 0 0 chrX 30179771 30179807 -146794333 + AT_rich Low_complexity Low_complexity 1 36 0 2154 114 3 0 chrX 30181265 30181554 -146792586 - AluSx SINE Alu -22 290 1 583 262 138 39 chrX 30181568 30181908 -146792232 + MLT1H LTR MaLR 118 521 -34 4927 41 3 3 chrX 30181908 30182499 -146791641 - LTR10C LTR ERV1 0 591 1 583 262 138 39 chrX 30182499 30182538 -146791602 + MLT1H LTR MaLR 521 555 0 2033 132 0 26 chrX 30183083 30183393 -146790747 - AluSx SINE Alu -10 302 1 541 247 60 27 chrX 30183474 30183624 -146790516 + MIR SINE MIR 26 180 -82 480 262 163 0 chrX 30183705 30183846 -146790294 + MIR3 SINE MIR 42 205 -3 430 109 16 0 chrX 30184550 30184614 -146789526 + MER31B LTR ERV1 3 67 -399 213 94 0 0 chrX 30184640 30184672 -146789468 + (A)n Simple_repeat Simple_repeat 1 32 0 255 170 0 0 chrX 30184675 30184722 -146789418 + (TCTG)n Simple_repeat Simple_repeat 2 48 0 1741 158 20 20 chrX 30185666 30185970 -146788170 - AluJo SINE Alu -8 304 1 327 93 0 0 chrX 30185990 30186033 -146788107 - MLT2B1 LTR ERVL 0 553 511 1543 207 43 62 chrX 30186111 30186587 -146787553 - MLT2B1 LTR ERVL -43 472 8 363 316 78 17 chrX 30186615 30186963 -146787177 + HAL1 LINE L1 820 1188 -1319 1702 171 14 10 chrX 30187090 30187383 -146786757 + AluJo SINE Alu 9 302 -10 252 271 39 98 chrX 30187660 30187897 -146786243 - L1ME LINE L1 -239 5882 5657 196 342 0 0 chrX 30188606 30188682 -146785458 - MIR SINE MIR -125 137 62 1507 220 85 11 chrX 30188724 30189087 -146785053 + MLT1B LTR MaLR 1 390 0 205 381 34 8 chrX 30189092 30189210 -146784930 + MIR3 SINE MIR 46 166 -42 25 0 0 0 chrX 30189327 30189352 -146784788 + AT_rich Low_complexity Low_complexity 1 25 0 2014 203 59 25 chrX 30189525 30189998 -146784142 + MLT1D LTR MaLR 1 489 -16 219 381 39 7 chrX 30190381 30190536 -146783604 - L2 LINE L2 -383 2931 2772 1074 241 80 62 chrX 30190823 30191308 -146782832 + PABL_B LTR ERV1 174 667 0 729 249 68 110 chrX 30191314 30191815 -146782325 - L2 LINE L2 -564 2750 2271 217 159 23 0 chrX 30191985 30192029 -146782111 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 322 294 85 55 chrX 30192835 30193054 -146781086 - MIR SINE MIR 0 262 21 396 0 0 0 chrX 30193543 30193587 -146780553 + (TG)n Simple_repeat Simple_repeat 1 44 0 4072 117 19 51 chrX 30193587 30194270 -146779870 + LTR8 LTR ERV1 31 691 0 1540 162 23 118 chrX 30194364 30194845 -146779295 - LTR49 LTR ERV1 -160 435 1 2191 112 0 3 chrX 30194897 30195200 -146778940 + AluSx SINE Alu 1 302 -10 438 252 37 44 chrX 30195529 30195664 -146778476 - L2 LINE L2 0 3313 3180 4321 155 100 53 chrX 30196763 30197671 -146776469 + LTR28 LTR ERV1 1 951 -69 379 274 73 31 chrX 30197843 30198102 -146776038 - L1M4 LINE L1 -1487 4659 4390 25 31 0 0 chrX 30198307 30198339 -146775801 + AT_rich Low_complexity Low_complexity 1 32 0 357 246 85 23 chrX 30198507 30198637 -146775503 + L1ME2 LINE L1 5304 5441 -2367 25 75 0 0 chrX 30198637 30198690 -146775450 + AT_rich Low_complexity Low_complexity 1 53 0 1336 158 187 45 chrX 30198693 30199067 -146775073 + LTR49 LTR ERV1 9 435 -160 36082 89 11 29 chrX 30199081 30205292 -146768848 + L1PA6 LINE L1 11 6150 -4 2355 90 0 0 chrX 30205317 30205616 -146768524 - AluY SINE Alu -12 299 1 666 175 50 19 chrX 30205616 30205776 -146768364 + LTR48 LTR ERV1 623 787 0 5074 186 94 128 chrX 30205778 30206913 -146767227 + LTR48-int LTR ERV1 1 1173 -3763 354 219 14 14 chrX 30206913 30206986 -146767154 + tRNA-Glu-GAG tRNA tRNA 3 75 0 5074 186 94 128 chrX 30206986 30207570 -146766570 + LTR48-int LTR ERV1 1173 357 -4579 2004 157 0 0 chrX 30207570 30207882 -146766258 - AluSx SINE Alu 0 312 1 5074 186 94 128 chrX 30207882 30208126 -146766014 + LTR48-int LTR ERV1 356 607 -4329 6667 163 20 6 chrX 30208267 30210519 -146763621 + L1PB1 LINE L1 3868 6151 0 1179 170 37 0 chrX 30210542 30210783 -146763357 + L1ME2 LINE L1 5691 5940 -224 396 236 193 19 chrX 30210879 30211015 -146763125 + L1ME2 LINE L1 5937 6106 -58 2258 105 3 0 chrX 30211015 30211311 -146762829 + AluSp SINE Alu 1 297 -16 396 236 193 19 chrX 30211311 30211335 -146762805 + L1ME2 LINE L1 6106 6125 -39 336 24 0 0 chrX 30211335 30211376 -146762764 + (TG)n Simple_repeat Simple_repeat 1 41 0 2867 94 29 0 chrX 30211398 30211811 -146762329 + L1PA13 LINE L1 5719 6143 -20 475 170 228 18 chrX 30211856 30212027 -146762113 - Charlie1 DNA MER1_type -112 2649 2443 22 35 0 0 chrX 30212405 30212434 -146761706 + AT_rich Low_complexity Low_complexity 1 29 0 711 248 0 7 chrX 30213244 30213397 -146760743 - FRAM SINE Alu -23 153 2 206 340 32 21 chrX 30213707 30213801 -146760339 + MIR SINE MIR 168 262 0 227 325 0 0 chrX 30213826 30213906 -146760234 - MIR SINE MIR -108 154 75 261 201 291 15 chrX 30214192 30214326 -146759814 - MIR3 SINE MIR -10 198 28 29 47 0 0 chrX 30214434 30214477 -146759663 + AT_rich Low_complexity Low_complexity 1 43 0 446 325 121 51 chrX 30214518 30214902 -146759238 - L1MD2 LINE L1 -296 5825 5527 1399 164 174 0 chrX 30214902 30215195 -146758945 + MER2 DNA MER2_type 1 344 0 446 325 121 51 chrX 30215195 30215486 -146758654 - L1MD2 LINE L1 -594 5527 5258 229 128 35 23 chrX 30215784 30215870 -146758270 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chrX 30216115 30216155 -146757985 + AT_rich Low_complexity Low_complexity 1 40 0 192 254 0 0 chrX 30216542 30216601 -146757539 + (TATG)n Simple_repeat Simple_repeat 2 60 0 388 327 115 10 chrX 30216727 30217118 -146757022 + L1ME LINE L1 5379 5810 -311 239 242 0 0 chrX 30217131 30217197 -146756943 + (TA)n Simple_repeat Simple_repeat 1 66 0 3940 196 56 81 chrX 30217361 30218483 -146755657 + L1MB7 LINE L1 3 1096 -5446 633 299 49 7 chrX 30218490 30218798 -146755342 + L1MB7 LINE L1 3600 3920 -2724 1373 234 113 85 chrX 30218800 30219316 -146754824 - MER39 LTR ERV1 0 707 7 6247 196 52 44 chrX 30219321 30220973 -146753167 + L1MB7 LINE L1 3918 5582 -1062 1880 189 35 27 chrX 30220973 30221375 -146752765 - MLT1B LTR MaLR 0 426 1 2245 189 48 22 chrX 30221464 30221961 -146752179 + L1MB7 LINE L1 6160 6669 -13 21 0 0 0 chrX 30222156 30222177 -146751963 + AT_rich Low_complexity Low_complexity 1 21 0 1191 208 11 30 chrX 30222296 30222561 -146751579 - MLT2B1 LTR ERVL 0 520 261 414 341 58 13 chrX 30222805 30223113 -146751027 - L1MD2 LINE L1 -1100 5046 4725 2198 108 0 3 chrX 30223194 30223489 -146750651 - AluSq SINE Alu -19 294 1 729 197 0 0 chrX 30223595 30223717 -146750423 + FLAM_A SINE Alu 1 122 -11 22 0 0 0 chrX 30223822 30223844 -146750296 + AT_rich Low_complexity Low_complexity 1 22 0 7226 39 0 4 chrX 30224015 30225001 -146749139 - L1PA5 LINE L1 -9 6145 5158 26 0 0 0 chrX 30225050 30225076 -146749064 + AT_rich Low_complexity Low_complexity 1 26 0 359 265 68 74 chrX 30225233 30225644 -146748496 + HAL1b LINE L1 1193 1326 -22 23 0 0 0 chrX 30225841 30225864 -146748276 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 30225883 30225904 -146748236 + AT_rich Low_complexity Low_complexity 1 21 0 1169 140 0 0 chrX 30276016 30276187 -146697953 + AluSg/x SINE Alu 131 301 -11 2174 104 13 7 chrX 30276191 30276489 -146697651 + AluSp SINE Alu 1 300 -13 772 246 88 126 chrX 30276759 30276881 -146697259 - MLT1J LTR MaLR 0 511 386 2474 64 7 0 chrX 30276881 30277177 -146696963 + AluY SINE Alu 1 298 -13 772 246 88 126 chrX 30277177 30277579 -146696561 - MLT1J LTR MaLR -125 386 7 351 210 57 89 chrX 30277777 30277934 -146696206 - MIR SINE MIR -41 221 70 1066 165 21 16 chrX 30278620 30278808 -146695332 + MER5A DNA MER1_type 1 189 0 412 321 6 30 chrX 30279899 30280067 -146694073 + MIR3 SINE MIR 15 178 -30 250 286 32 63 chrX 30280109 30280235 -146693905 + LTR16C LTR ERVL 188 309 -182 180 97 0 0 chrX 30280357 30280388 -146693752 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2208 102 0 0 chrX 30280390 30280673 -146693467 - AluSx SINE Alu -29 283 1 1106 242 25 43 chrX 30281018 30281340 -146692800 + LTR16C LTR ERVL 161 476 -15 1450 166 22 27 chrX 30282030 30282335 -146691805 + MER61B LTR ERV1 1 396 -28 3268 128 29 37 chrX 30282344 30282702 -146691438 + MER61B-int LTR ERV1 1 360 -4857 2170 130 0 3 chrX 30282702 30283001 -146691139 - AluSx SINE Alu -14 298 1 3268 128 29 37 chrX 30283001 30283406 -146690734 + MER61B-int LTR ERV1 360 840 -4377 28832 81 13 7 chrX 30283406 30283484 -146690656 + MER61B-int LTR ERV1 958 1034 -4183 2424 86 0 0 chrX 30283484 30283785 -146690355 - AluY SINE Alu -10 301 1 28832 81 13 7 chrX 30283785 30287899 -146686241 + MER61B-int LTR ERV1 1034 5217 0 1493 158 28 12 chrX 30287899 30288198 -146685942 + MER61B LTR ERV1 1 396 -28 2604 83 26 9 chrX 30288240 30288589 -146685551 + THE1A LTR MaLR 1 355 0 278 212 10 131 chrX 30289986 30290085 -146684055 - L2 LINE L2 -2 3311 3225 1743 216 41 51 chrX 30290092 30290462 -146683678 - MER31A LTR ERV1 0 485 120 5385 78 5 6 chrX 30290462 30291130 -146683010 + PABL_B LTR ERV1 1 667 0 1743 216 41 51 chrX 30291130 30291249 -146682891 - MER31A LTR ERV1 -365 120 1 27101 108 47 53 chrX 30291283 30292152 -146681988 - MER31A-int LTR ERV1 -151 4785 3912 2486 182 57 51 chrX 30292152 30292616 -146681524 + MLT2B2 LTR ERVL 3 472 -43 369 0 0 0 chrX 30292616 30292657 -146681483 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 2486 182 57 51 chrX 30292657 30292702 -146681438 + MLT2B2 LTR ERVL 472 515 0 27101 108 47 53 chrX 30292702 30295625 -146678515 - MER31A-int LTR ERV1 -1024 3912 1022 1135 87 0 7 chrX 30295625 30295774 -146678366 + L1PA10 LINE L1 6019 6166 -2 27101 108 47 53 chrX 30295774 30296592 -146677548 - MER31A-int LTR ERV1 -3914 1022 201 372 173 0 53 chrX 30296651 30296726 -146677414 - MER31A-int LTR ERV1 -4669 267 197 436 145 0 0 chrX 30296733 30296802 -146677338 - Alu SINE Alu 0 312 244 1361 39 0 0 chrX 30296864 30297020 -146677120 - MER31A-int LTR ERV1 -4763 173 18 1626 190 138 41 chrX 30297073 30297515 -146676625 - MER31A LTR ERV1 0 485 1 198 0 0 0 chrX 30297720 30297742 -146676398 + (A)n Simple_repeat Simple_repeat 1 22 0 214 342 136 41 chrX 30297742 30298251 -146675889 - L2 LINE L2 -375 2939 2383 317 259 129 0 chrX 30298355 30298471 -146675669 + MER112 DNA MER1_type 3 133 -127 417 396 0 0 chrX 30298538 30298697 -146675443 + (CGG)n Simple_repeat Simple_repeat 2 160 0 210 139 0 0 chrX 30301078 30301114 -146673026 + (TG)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chrX 30301826 30301854 -146672286 + AT_rich Low_complexity Low_complexity 1 28 0 279 274 48 65 chrX 30302212 30302336 -146671804 - L2 LINE L2 -556 2758 2637 818 203 0 59 chrX 30302448 30302610 -146671530 + MER5A DNA MER1_type 14 165 -24 2314 103 0 0 chrX 30302610 30302911 -146671229 - AluSx SINE Alu -11 301 1 818 203 0 59 chrX 30302911 30302935 -146671205 + MER5A DNA MER1_type 165 189 0 321 26 0 0 chrX 30302996 30303034 -146671106 + (TG)n Simple_repeat Simple_repeat 1 38 0 574 316 68 24 chrX 30303425 30303675 -146670465 + MIR SINE MIR 2 262 0 222 316 133 20 chrX 30303745 30303843 -146670297 + L2 LINE L2 3137 3245 -27 296 286 0 13 chrX 30304363 30304440 -146669700 - MIR3 SINE MIR -5 203 128 512 246 56 7 chrX 30304870 30305012 -146669128 + MIR SINE MIR 110 258 -4 5359 70 17 6 chrX 30305166 30305823 -146668317 + PABL_B LTR ERV1 4 667 0 3316 113 36 2 chrX 30305928 30306398 -146667742 - LTR19A LTR ERV1 0 486 1 59953 73 6 10 chrX 30306398 30313845 -146660295 - HERVFH19I LTR ERV1 0 7719 304 252 0 0 0 chrX 30313845 30313873 -146660267 + (GA)n Simple_repeat Simple_repeat 1 28 0 59953 73 6 10 chrX 30313873 30314176 -146659964 - HERVFH19I LTR ERV1 -7415 304 1 3487 96 36 2 chrX 30314176 30314646 -146659494 - LTR19A LTR ERV1 0 486 1 1580 234 22 25 chrX 30314646 30315052 -146659088 + LTR16A LTR ERVL 28 444 -6 24 0 0 0 chrX 30316089 30316113 -146658027 + AT_rich Low_complexity Low_complexity 1 24 0 203 345 74 34 chrX 30316810 30316958 -146657182 + MIR SINE MIR 1 154 -108 434 262 133 52 chrX 30316978 30317211 -146656929 - MIR SINE MIR 0 262 11 722 303 123 24 chrX 30318401 30319163 -146654977 + HAL1 LINE L1 971 1808 -699 201 39 0 0 chrX 30319823 30319849 -146654291 + (CA)n Simple_repeat Simple_repeat 2 27 0 257 192 55 0 chrX 30321922 30321995 -146652145 + LTR16A1 LTR ERVL 49 125 -332 803 268 0 0 chrX 30322030 30322220 -146651920 - MER58A DNA MER1_type -16 208 19 868 275 27 45 chrX 30322229 30322560 -146651580 + LTR16A LTR ERVL 120 444 -6 224 146 0 21 chrX 30322931 30322979 -146651161 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1514 261 29 11 chrX 30323971 30324420 -146649720 - LTR16C LTR ERVL -34 457 1 2313 96 3 0 chrX 30324466 30324758 -146649382 - AluSx SINE Alu -19 293 1 1110 237 137 34 chrX 30324809 30325319 -146648821 + MLT1F1 LTR MaLR 1 564 -3 1689 54 19 0 chrX 30325414 30325619 -146648521 + AluY SINE Alu 83 291 -20 1075 239 61 18 chrX 30326018 30326275 -146647865 + MER2 DNA MER2_type 1 277 -68 5225 91 9 4 chrX 30326275 30327046 -146647094 - L1MA2 LINE L1 0 6304 5530 1075 239 61 18 chrX 30327046 30327118 -146647022 + MER2 DNA MER2_type 277 344 -1 2563 145 34 2 chrX 30328438 30328851 -146645289 - MSTB LTR MaLR 0 426 1 1159 259 58 48 chrX 30329037 30329434 -146644706 - L2 LINE L2 -1 3312 2912 1717 156 0 79 chrX 30330586 30330914 -146643226 - AluSq SINE Alu -11 302 1 902 241 71 5 chrX 30331369 30331593 -146642547 + MIR SINE MIR 3 241 -21 1187 309 16 14 chrX 30332064 30332498 -146641642 + LTR16A LTR ERVL 16 450 0 569 228 82 16 chrX 30334062 30334262 -146639878 + MLT1H1 LTR MaLR 304 555 0 568 274 116 0 chrX 30334334 30334498 -146639642 + MIR SINE MIR 29 211 -51 425 313 28 0 chrX 30334652 30334796 -146639344 + MIR SINE MIR 106 253 -9 489 326 4 19 chrX 30336009 30336273 -146637867 - MIR SINE MIR -1 261 2 1987 143 0 3 chrX 30336554 30336847 -146637293 - AluSp SINE Alu -8 305 14 1497 188 133 86 chrX 30336879 30337411 -146636729 + MLT1F1 LTR MaLR 12 567 0 21 36 0 0 chrX 30338386 30338414 -146635726 + AT_rich Low_complexity Low_complexity 1 28 0 5871 98 16 0 chrX 30338414 30339338 -146634802 - L1PA15 LINE L1 0 6165 5213 417 256 65 36 chrX 30339349 30339517 -146634623 - MER5A DNA MER1_type -6 183 11 233 313 0 0 chrX 30339752 30339819 -146634321 + L2 LINE L2 3204 3270 -2 467 217 174 0 chrX 30341200 30341245 -146632895 - L1MA10 LINE L1 -3 6331 6287 3512 218 69 21 chrX 30341245 30342950 -146631190 - L1ME1 LINE L1 -44 6191 4407 1582 191 188 0 chrX 30342950 30343301 -146630839 - MER47B DNA MER2_type 0 418 2 1082 247 6 18 chrX 30343302 30343634 -146630506 - L1ME1 LINE L1 -1807 4408 4081 1743 196 7 0 chrX 30343701 30344002 -146630138 + AluJo SINE Alu 1 303 -9 1342 224 105 63 chrX 30344016 30344467 -146629673 - MLT1E LTR MaLR -24 551 91 2128 110 40 0 chrX 30344467 30344767 -146629373 + AluSx SINE Alu 1 312 0 1342 224 105 63 chrX 30344767 30344862 -146629278 - MLT1E LTR MaLR -484 91 1 6289 244 49 44 chrX 30344862 30346070 -146628070 - L1ME1 LINE L1 -2139 4076 2875 2853 10 0 0 chrX 30346070 30346381 -146627759 - AluYa5 SINE Alu 0 311 1 6289 244 49 44 chrX 30346381 30346688 -146627452 - L1ME1 LINE L1 -3340 2875 2571 2112 112 0 14 chrX 30346688 30347003 -146627137 + AluSx SINE Alu 1 311 0 6289 244 49 44 chrX 30347003 30348824 -146625316 - L1ME1 LINE L1 -3644 2571 763 2871 70 8 3 chrX 30348824 30349207 -146624933 - L1PA13 LINE L1 -11 6152 5768 6289 244 49 44 chrX 30349207 30349938 -146624202 - L1ME1 LINE L1 -5452 763 37 1654 184 93 37 chrX 30350373 30350748 -146623392 - MSTD LTR MaLR 0 396 1 22 88 0 0 chrX 30351784 30351841 -146622299 + AT_rich Low_complexity Low_complexity 1 57 0 553 292 74 20 chrX 30351931 30352321 -146621819 - L1ME4a LINE L1 -175 5946 5536 882 259 131 40 chrX 30353170 30353247 -146620893 + MLT1H LTR MaLR 1 70 -479 17510 44 2 0 chrX 30353247 30356187 -146617953 + L1PA5 LINE L1 3210 6152 -2 882 259 131 40 chrX 30356187 30356514 -146617626 + MLT1H LTR MaLR 70 442 -107 21 36 0 0 chrX 30357689 30357717 -146616423 + AT_rich Low_complexity Low_complexity 1 28 0 1615 142 98 41 chrX 30357776 30358094 -146616046 - MER1B DNA MER1_type -1 336 1 184 320 0 0 chrX 30358269 30358319 -146615821 + L2 LINE L2 3208 3257 -15 207 0 0 0 chrX 30359145 30359168 -146614972 + (TC)n Simple_repeat Simple_repeat 2 24 0 219 36 0 0 chrX 30359170 30359198 -146614942 + (CA)n Simple_repeat Simple_repeat 1 28 0 288 339 149 33 chrX 30360209 30360451 -146613689 - L2 LINE L2 -2 3270 3001 207 0 0 0 chrX 30361992 30362015 -146612125 + (A)n Simple_repeat Simple_repeat 1 23 0 407 347 20 7 chrX 30362116 30362266 -146611874 - L3 LINE CR1 -10 1567 1416 193 313 75 68 chrX 30362328 30362593 -146611547 + L2 LINE L2 2709 2975 -339 308 186 114 0 chrX 30362719 30362789 -146611351 + L2 LINE L2 3236 3313 0 446 256 169 5 chrX 30362912 30363215 -146610925 - LTR33 LTR ERVL -12 509 110 1229 334 55 28 chrX 30363296 30363913 -146610227 - L3 LINE CR1 -344 1233 600 315 226 21 21 chrX 30364012 30364105 -146610035 + MER103 DNA DNA 1 93 -73 588 275 65 44 chrX 30364247 30364476 -146609664 + MIR SINE MIR 29 262 0 308 300 27 18 chrX 30364663 30364773 -146609367 + L1ME LINE L1 5276 5386 -856 535 303 6 12 chrX 30364889 30365051 -146609089 - MIR SINE MIR -1 261 101 296 235 15 0 chrX 30365065 30365133 -146609007 + L1ME LINE L1 5557 5625 -496 1171 277 73 15 chrX 30365149 30365560 -146608580 + LTR16A LTR ERVL 16 450 0 544 263 67 50 chrX 30365703 30366061 -146608079 + L1MCc LINE L1 21 384 -6039 1578 243 57 21 chrX 30366186 30367134 -146607006 + L1MCc LINE L1 814 1910 -4851 745 261 70 7 chrX 30367147 30367434 -146606706 - MLT1D LTR MaLR -2 503 199 1083 256 46 46 chrX 30367443 30367974 -146606166 + L1MCc LINE L1 2658 3188 -3753 2404 92 0 13 chrX 30367974 30368289 -146605851 + AluSq SINE Alu 1 311 -2 1083 256 46 46 chrX 30368289 30368362 -146605778 + L1MCc LINE L1 3188 3260 -3681 1977 172 42 3 chrX 30368362 30368717 -146605423 + MER93b LTR ERV1 5 373 0 1083 256 46 46 chrX 30368717 30368827 -146605313 + L1MCc LINE L1 3260 3336 -3605 998 205 80 86 chrX 30368832 30369218 -146604922 + L1MD3 LINE L1 6801 7184 -811 566 240 0 0 chrX 30369233 30369358 -146604782 + MLT1F1 LTR MaLR 1 125 -442 2899 173 39 2 chrX 30369359 30369920 -146604220 + L1MD3 LINE L1 7400 7981 -14 2082 93 23 33 chrX 30369922 30370222 -146603918 - AluY SINE Alu -14 297 1 283 250 42 10 chrX 30370260 30370356 -146603784 + MLT1J2 LTR MaLR 344 442 -8 27 49 0 0 chrX 30370538 30370579 -146603561 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 30371224 30371246 -146602894 + AT_rich Low_complexity Low_complexity 1 22 0 275 289 58 10 chrX 30371293 30371397 -146602743 - MIR SINE MIR -141 121 13 21 0 0 0 chrX 30371587 30371608 -146602532 + AT_rich Low_complexity Low_complexity 1 21 0 567 289 102 49 chrX 30371661 30371907 -146602233 - MIR SINE MIR -2 260 2 904 252 29 0 chrX 30372783 30372993 -146601147 + MIR SINE MIR 43 258 -4 1893 146 7 3 chrX 30373266 30373554 -146600586 + AluJb SINE Alu 1 289 -23 225 308 0 26 chrX 30373631 30373709 -146600431 - L2 LINE L2 -61 3252 3177 555 268 252 4 chrX 30373717 30373971 -146600169 + L2 LINE L2 2827 3143 -170 3630 259 40 14 chrX 30373998 30374967 -146599173 - L2 LINE L2 -508 2806 1813 1178 281 97 21 chrX 30374967 30375402 -146598738 - L2 LINE L2 -2846 468 1 797 167 0 8 chrX 30375762 30375888 -146598252 - FLAM_A SINE Alu -8 125 1 186 133 0 0 chrX 30376589 30376619 -146597521 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1199 235 55 48 chrX 30376910 30377344 -146596796 - MLT1J1 LTR MaLR -2 444 8 233 155 17 0 chrX 30378675 30378733 -146595407 + GA-rich Low_complexity Low_complexity 2 60 0 252 0 0 0 chrX 30380079 30380107 -146594033 + (T)n Simple_repeat Simple_repeat 1 28 0 1179 306 47 10 chrX 30380787 30381192 -146592948 + LTR16C LTR ERVL 71 490 -1 537 252 96 28 chrX 30381584 30381879 -146592261 + LTR33 LTR ERVL 173 521 0 369 277 6 77 chrX 30381879 30382057 -146592083 + MIR SINE MIR 25 189 -73 1207 176 0 0 chrX 30382472 30382660 -146591480 + MER5A DNA MER1_type 2 189 0 1219 228 42 9 chrX 30382832 30383266 -146590874 - MLT1E LTR MaLR 0 593 50 1211 222 51 28 chrX 30383432 30383888 -146590252 - MLT1E-int LTR MaLR -766 605 15 979 251 70 0 chrX 30383922 30384165 -146589975 - MLT1E LTR MaLR 0 593 334 926 259 56 0 chrX 30384173 30384389 -146589751 - MLT1E LTR MaLR -365 228 1 406 355 35 12 chrX 30384802 30384974 -146589166 + MER5B DNA MER1_type 1 176 -2 320 152 15 0 chrX 30385176 30385242 -146588898 + CT-rich Low_complexity Low_complexity 3 69 0 1673 203 42 97 chrX 30386009 30386613 -146587527 - L1ME1 LINE L1 -7 6228 5661 4843 104 5 36 chrX 30386613 30387366 -146586774 + L1PB3 LINE L1 5420 6149 -5 1673 203 42 97 chrX 30387366 30387422 -146586718 - L1ME1 LINE L1 -574 5661 5604 346 273 34 0 chrX 30387425 30387513 -146586627 + L1MC4 LINE L1 6612 6702 -1340 293 0 27 0 chrX 30387533 30387570 -146586570 + (GA)n Simple_repeat Simple_repeat 2 39 0 1667 156 0 56 chrX 30387596 30387884 -146586256 - AluJo SINE Alu -40 272 1 370 176 8 131 chrX 30387886 30388026 -146586114 - L1ME1 LINE L1 -682 5553 5437 1260 204 70 77 chrX 30388026 30388599 -146585541 - L1ME1 LINE L1 -2539 3676 3108 1024 262 0 7 chrX 30388598 30388873 -146585267 - L1ME1 LINE L1 -6086 310 38 * 408 245 86 36 chrX 30389184 30389323 -146584817 - MLT1J LTR MaLR -110 401 256 312 70 0 0 chrX 30389978 30390021 -146584119 + (TC)n Simple_repeat Simple_repeat 1 43 0 299 256 42 3 chrX 30390347 30390459 -146583681 + MIR SINE MIR 37 157 -63 214 331 45 11 chrX 30390500 30390616 -146583524 + MIR SINE MIR 10 137 -71 194 250 0 91 chrX 30390597 30390685 -146583455 + L2 LINE L2 3229 3308 -5 * 309 26 0 0 chrX 30391702 30391740 -146582400 + (TA)n Simple_repeat Simple_repeat 1 38 0 252 0 0 0 chrX 30391739 30391767 -146582373 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 583 262 73 31 chrX 30392195 30392463 -146581677 + MLT1H LTR MaLR 14 333 -216 342 189 31 1 chrX 30392539 30392627 -146581513 + MLT1F LTR MaLR 453 531 -11 987 243 67 80 chrX 30392888 30393414 -146580726 + LTR33 LTR ERVL 3 521 0 277 195 115 23 chrX 30393657 30393744 -146580396 + MIR SINE MIR 149 243 -19 592 133 0 0 chrX 30394611 30394701 -146579439 + MER39 LTR ERV1 1 90 -617 1378 155 34 21 chrX 30394732 30395128 -146579012 + LTR32 LTR ERVL 14 471 0 2589 118 12 16 chrX 30395129 30395553 -146578587 + MER39 LTR ERV1 286 707 0 1399 198 136 9 chrX 30397293 30397743 -146576397 - MER69 DNA AcHobo -10 2516 2010 703 273 115 18 chrX 30397728 30398006 -146576134 - MER69 DNA AcHobo -1944 582 278 * 1176 216 100 43 chrX 30398006 30398171 -146575969 + MLT1D LTR MaLR 1 155 -350 2431 80 3 0 chrX 30398171 30398470 -146575670 - AluSp SINE Alu -13 300 1 1176 216 100 43 chrX 30398470 30398675 -146575465 + MLT1D LTR MaLR 155 392 -113 362 292 10 10 chrX 30398687 30398783 -146575357 - MIR SINE MIR -75 133 38 222 400 35 9 chrX 30399361 30399476 -146574664 + L2 LINE L2 3136 3253 -19 255 322 84 42 chrX 30399482 30399625 -146574515 + MIR SINE MIR 20 168 -94 833 289 44 4 chrX 30400300 30400746 -146573394 + L1MDb LINE L1 7 549 -5860 2214 216 40 12 chrX 30400747 30401368 -146572772 + L1MD2 LINE L1 5620 6242 0 404 266 0 71 chrX 30401982 30402087 -146572053 + MIR SINE MIR 119 211 -51 1883 163 47 24 chrX 30402087 30402468 -146571672 + MLT1B LTR MaLR 1 390 0 404 266 0 71 chrX 30402468 30402516 -146571624 + MIR SINE MIR 211 261 -1 1784 192 21 0 chrX 30403390 30403723 -146570417 - MER58B DNA MER1_type -1 340 1 783 293 98 0 chrX 30403975 30404221 -146569919 + L2 LINE L2 2510 2779 -535 1478 270 23 3 chrX 30404260 30404649 -146569491 - LTR16A LTR ERVL -38 412 16 1343 265 58 44 chrX 30404664 30404826 -146569314 + L2 LINE L2 2828 2986 -327 2562 70 0 0 chrX 30404826 30405128 -146569012 - AluY SINE Alu -9 302 1 1343 265 58 44 chrX 30405128 30405444 -146568696 + L2 LINE L2 2986 3313 0 289 193 0 18 chrX 30406699 30406756 -146567384 - LTR67 LTR ERVL -400 157 102 226 298 106 0 chrX 30406933 30407027 -146567113 - L2 LINE L2 0 3272 3169 218 365 0 0 chrX 30407640 30407725 -146566415 - MIR SINE MIR -92 170 86 286 292 28 0 chrX 30408023 30408095 -146566045 + (CATG)n Simple_repeat Simple_repeat 1 74 0 2896 143 0 19 chrX 30408282 30408763 -146565377 - L1PA16 LINE L1 -6 6160 5689 21 0 0 0 chrX 30409084 30409105 -146565035 + AT_rich Low_complexity Low_complexity 1 21 0 208 340 0 0 chrX 30409430 30409477 -146564663 + L2 LINE L2 3138 3184 -88 425 253 65 85 chrX 30410487 30410938 -146563202 - MLT1H LTR MaLR 0 595 114 256 273 20 50 chrX 30411185 30411284 -146562856 + MIR SINE MIR 83 178 -84 31 0 0 0 chrX 30612470 30612501 -146361639 + AT_rich Low_complexity Low_complexity 1 31 0 1851 133 29 48 chrX 30612860 30613236 -146360904 + THE1C LTR MaLR 7 375 0 2193 131 78 0 chrX 30613595 30613955 -146360185 - MLT1B LTR MaLR 0 390 3 358 200 15 0 chrX 30614022 30614087 -146360053 + L2 LINE L2 3248 3313 0 371 214 62 35 chrX 30614607 30614752 -146359388 - L1ME4a LINE L1 -5 6116 5968 6378 36 0 1 chrX 30614911 30615669 -146358471 + L1PA5 LINE L1 5392 6148 -6 493 282 81 35 chrX 30615757 30616126 -146358014 - L1ME4a LINE L1 -345 5776 5391 21 0 0 0 chrX 30616194 30616215 -146357925 + AT_rich Low_complexity Low_complexity 1 21 0 2453 78 0 3 chrX 30616388 30616696 -146357444 - AluY SINE Alu -4 307 1 1314 181 26 26 chrX 30616726 30616992 -146357148 + MSTD LTR MaLR 3 268 -128 933 215 188 27 chrX 30616988 30617286 -146356854 - MLT1G3 LTR MaLR -15 515 170 * 225 0 0 0 chrX 30617296 30617321 -146356819 + (GA)n Simple_repeat Simple_repeat 1 25 0 2854 179 42 31 chrX 30617737 30618231 -146355909 + MLT2B3 LTR ERVL 2 504 -50 231 36 0 0 chrX 30618231 30618259 -146355881 + (TC)n Simple_repeat Simple_repeat 2 29 0 2854 179 42 31 chrX 30618259 30618311 -146355829 + MLT2B3 LTR ERVL 504 554 0 523 286 33 24 chrX 30618446 30618659 -146355481 + LTR16A1 LTR ERVL 157 371 -86 806 169 114 45 chrX 30618660 30618861 -146355279 - AluJb SINE Alu -11 301 87 289 288 68 46 chrX 30619258 30619609 -146354531 + L1M4 LINE L1 3595 3953 -2193 657 320 76 25 chrX 30619935 30620369 -146353771 + L1M4 LINE L1 4378 4833 -1313 22 0 0 0 chrX 30620417 30620439 -146353701 + AT_rich Low_complexity Low_complexity 1 22 0 1001 162 22 68 chrX 30620548 30620604 -146353536 - MLT2B3 LTR ERVL 0 554 497 216 0 0 0 chrX 30620604 30620628 -146353512 + (GA)n Simple_repeat Simple_repeat 2 25 0 1001 162 22 68 chrX 30620628 30620793 -146353347 - MLT2B3 LTR ERVL -57 497 343 1777 152 4 0 chrX 30620953 30621216 -146352924 + AluSx SINE Alu 1 264 -48 278 171 0 0 chrX 30621216 30621257 -146352883 + AluJ/FLAM SINE Alu 17 57 -245 249 294 265 10 chrX 30621536 30621638 -146352502 - MIR3 SINE MIR -51 157 30 185 259 154 86 chrX 30621692 30621854 -146352286 - L3b LINE CR1 -163 1420 1248 978 95 0 14 chrX 30623013 30623160 -146350980 - L1PA16 LINE L1 -1 6165 6021 400 218 98 30 chrX 30623376 30623509 -146350631 - MIR SINE MIR -77 185 44 * 430 311 20 20 chrX 30623508 30623656 -146350484 + MIR SINE MIR 63 210 -52 * 565 330 165 17 chrX 30623634 30624040 -146350100 - L3 LINE CR1 -935 642 177 2059 144 0 3 chrX 30624115 30624427 -146349713 + AluSx SINE Alu 1 311 -1 2603 145 21 5 chrX 30624476 30624897 -146349243 + MSTA LTR MaLR 1 428 0 336 290 109 7 chrX 30624974 30625112 -146349028 - MIR SINE MIR -1 261 110 195 114 0 0 chrX 30625136 30625171 -146348969 + (A)n Simple_repeat Simple_repeat 1 35 0 25 90 0 0 chrX 30625660 30625727 -146348413 + AT_rich Low_complexity Low_complexity 1 67 0 32 0 0 0 chrX 30625900 30625932 -146348208 + AT_rich Low_complexity Low_complexity 1 32 0 2329 127 0 6 chrX 30625958 30626319 -146347821 - L1PA13 LINE L1 0 6163 5805 1986 134 3 27 chrX 30627890 30628189 -146345951 - AluSx SINE Alu -20 292 1 562 125 29 29 chrX 30628283 30628387 -146345753 + MLT1D LTR MaLR 402 505 0 380 273 34 34 chrX 30628944 30629182 -146344958 - L1MEc LINE L1 -4833 1709 1472 728 152 179 0 chrX 30629186 30629329 -146344811 - MER7A DNA MER2_type -3 334 166 1293 129 51 14 chrX 30629329 30629546 -146344594 - MER30B DNA MER1_type 0 230 6 295 48 24 0 chrX 30629557 30629599 -146344541 - MER30B DNA MER1_type -135 55 13 * 1190 110 0 0 chrX 30629597 30629770 -146344370 - MER7A DNA MER2_type -173 173 3 3015 260 67 9 chrX 30629772 30630784 -146343356 - L1MEc LINE L1 -5219 1606 536 21 0 0 0 chrX 30631339 30631360 -146342780 + AT_rich Low_complexity Low_complexity 1 21 0 566 287 146 25 chrX 30631435 30632100 -146342040 + L1ME4a LINE L1 5373 6119 -2 235 342 56 82 chrX 30633038 30633234 -146340906 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 30633250 30633287 -146340853 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 30633386 30633768 -146340372 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 30634681 30634705 -146339435 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 30634743 30634801 -146339339 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 30634815 30635105 -146339035 + (TA)n Simple_repeat Simple_repeat 1 279 0 28600 94 26 10 chrX 30635128 30640716 -146333424 - L1PA7 LINE L1 -15 6454 742 760 177 0 34 chrX 30640863 30641010 -146333130 - FLAM_C SINE Alu 0 143 2 1235 241 138 0 chrX 30641883 30642231 -146331909 - MSTD LTR MaLR 0 396 1 243 171 186 57 chrX 30642704 30642774 -146331366 + MSTD LTR MaLR 174 252 -144 * 342 276 39 31 chrX 30642772 30642899 -146331241 - MLT1H LTR MaLR -29 520 393 1045 165 6 6 chrX 30642904 30643086 -146331054 - MER58A DNA MER1_type -1 223 42 231 233 0 0 chrX 30643135 30643178 -146330962 - MLT1H LTR MaLR -195 354 312 306 260 13 0 chrX 30643223 30643300 -146330840 - MLT1H LTR MaLR -392 157 80 20087 163 26 18 chrX 30643779 30645429 -146328711 - L1 LINE L1 -2363 5202 3567 318 87 0 0 chrX 30645429 30645475 -146328665 + (TG)n Simple_repeat Simple_repeat 1 46 0 20087 163 26 18 chrX 30645475 30645997 -146328143 - L1 LINE L1 -3998 3567 3051 2510 61 0 0 chrX 30645997 30646293 -146327847 - AluY SINE Alu -15 296 1 20087 163 26 18 chrX 30646293 30647053 -146327087 - L1 LINE L1 -4514 3051 2299 2428 85 0 0 chrX 30647053 30647358 -146326782 - AluSg SINE Alu -5 305 1 20087 163 26 18 chrX 30647358 30649553 -146324587 - L1 LINE L1 -5266 2299 25 522 264 7 14 chrX 30649936 30650084 -146324056 - L2 LINE L2 0 3313 3167 2856 135 74 2 chrX 30650300 30650811 -146323329 - MER34B LTR ERV1 0 565 18 434 327 165 26 chrX 30650813 30651394 -146322746 - L2 LINE L2 -943 2371 1710 2528 51 0 0 chrX 30651827 30652123 -146322017 + AluY SINE Alu 1 296 -15 3879 97 2 5 chrX 30652199 30652755 -146321385 - MER41A LTR ERV1 0 554 1 2356 79 10 0 chrX 30652787 30653092 -146321048 + AluY SINE Alu 1 308 -3 273 219 26 97 chrX 30653134 30653248 -146320892 + L2 LINE L2 2391 2496 -818 747 308 74 27 chrX 30653285 30653584 -146320556 + L2 LINE L2 2484 2796 -518 3020 190 80 3 chrX 30653585 30654259 -146319881 - LTR48 LTR ERV1 0 787 62 718 155 11 33 chrX 30654261 30654442 -146319698 + CT-rich Low_complexity Low_complexity 3 179 0 1595 90 35 4 chrX 30654452 30654707 -146319433 - LTR48-int LTR ERV1 -251 4764 4502 * 6556 89 42 32 chrX 30654703 30655813 -146318327 - MER4A-int LTR ERV1 -1641 4957 3837 3521 129 119 39 chrX 30655812 30656461 -146317679 - MER4A-int LTR ERV1 -2917 3681 2941 * 2425 39 0 0 chrX 30656461 30656796 -146317344 + AluY SINE Alu 1 335 0 3521 129 119 39 chrX 30656796 30657019 -146317121 - MER4A-int LTR ERV1 -3657 2941 2737 1302 146 75 0 chrX 30657019 30657258 -146316882 + LTR8 LTR ERV1 1 257 -434 4171 86 53 9 chrX 30657258 30657959 -146316181 - MER4A-int LTR ERV1 -4103 2495 1764 5576 106 72 23 chrX 30657981 30658451 -146315689 - MER4A-int LTR ERV1 -5600 1158 713 2311 112 77 26 chrX 30658451 30658879 -146315261 + LTR7 LTR ERV1 1 450 0 5576 106 72 23 chrX 30658879 30658987 -146315153 - MER4A-int LTR ERV1 -6045 713 612 2492 63 7 0 chrX 30658987 30659288 -146314852 - AluY SINE Alu -8 303 1 5576 106 72 23 chrX 30659288 30659624 -146314516 - MER4A-int LTR ERV1 -6146 612 198 1350 226 39 7 chrX 30659685 30659990 -146314150 - MER4A-int LTR ERV1 -4163 2168 1854 189 0 0 0 chrX 30660038 30660059 -146314081 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2608 81 149 14 chrX 30660140 30660688 -146313452 - MER4A-int LTR ERV1 -5912 686 1 1715 93 160 83 chrX 30660691 30661066 -146313074 - MER4A LTR ERV1 0 664 261 568 141 0 10 chrX 30661066 30661165 -146312975 - MER4A LTR ERV1 -566 98 1 488 285 106 0 chrX 30661178 30661301 -146312839 + L2 LINE L2 3136 3271 -1 725 207 110 35 chrX 30661433 30661660 -146312480 + L1ME3A LINE L1 5925 6168 -2 186 313 100 56 chrX 30661904 30662064 -146312076 - MIR SINE MIR -63 199 33 718 284 70 87 chrX 30662967 30663412 -146310728 + LTR16A LTR ERVL 1 437 -13 549 297 97 35 chrX 30663841 30664305 -146309835 + L1ME4a LINE L1 5393 5885 -236 2638 218 10 58 chrX 30665561 30665775 -146308365 + L1ME1 LINE L1 5499 5722 -444 2267 107 3 0 chrX 30665775 30666074 -146308066 - AluSx SINE Alu -12 300 1 2638 218 10 58 chrX 30666074 30666555 -146307585 + L1ME1 LINE L1 5722 6161 -5 2179 92 55 0 chrX 30666573 30666865 -146307275 + AluSg SINE Alu 1 308 -2 3848 122 61 42 chrX 30667061 30667702 -146306438 - MER39B LTR ERV1 0 653 1 2320 100 3 0 chrX 30667776 30668076 -146306064 + AluSq SINE Alu 1 301 -12 385 156 0 0 chrX 30669128 30669192 -146304948 - L1MC4a LINE L1 -119 7689 7626 982 221 147 81 chrX 30669408 30669938 -146304202 - MER34B LTR ERV1 0 565 1 2588 148 138 16 chrX 30669955 30670455 -146303685 + LTR48 LTR ERV1 1 561 -226 3859 107 4 4 chrX 30670457 30670964 -146303176 - MER84 LTR ERV1 0 507 1 10562 106 26 8 chrX 30670964 30672442 -146301698 - MER84-int LTR ERV1 0 4954 3451 * 16972 87 24 8 chrX 30672438 30674681 -146299459 - MER84-int LTR ERV1 -2674 2280 1 2149 105 0 41 chrX 30674681 30674780 -146299360 - MER84 LTR ERVI 0 507 405 2148 124 0 0 chrX 30674780 30675079 -146299061 - AluSx SINE Alu -9 303 5 2149 105 0 41 chrX 30675079 30675294 -146298846 - MER84 LTR ERVI -102 405 206 881 194 59 11 chrX 30675292 30675478 -146298662 - Charlie4 DNA MER1_type -1766 195 1 * 2312 79 0 30 chrX 30676154 30676459 -146297681 - AluSx SINE Alu -16 296 1 1301 256 82 54 chrX 30676569 30677072 -146297068 - LTR33 LTR ERVL -3 518 2 393 185 65 0 chrX 30678499 30678591 -146295549 - MLT1J LTR MaLR 0 511 414 923 216 131 5 chrX 30678662 30678884 -146295256 - MLT1J LTR MaLR -261 250 1 405 182 0 0 chrX 30679160 30679226 -146294914 - MER45B DNA AcHobo 0 1040 975 750 177 0 31 chrX 30679237 30679367 -146294773 + FLAM_A SINE Alu 1 126 -7 1019 193 78 46 chrX 30679393 30679611 -146294529 - MER45B DNA AcHobo -815 225 1 248 350 86 0 chrX 30679616 30679733 -146294407 + LTR16A LTR ERVL 1 127 -323 270 307 35 9 chrX 30679975 30680089 -146294051 - HAL1 LINE L1 -834 1673 1557 2288 255 72 43 chrX 30680119 30680229 -146293911 - L1MC4 LINE L1 -15 8027 7922 2239 118 0 3 chrX 30680229 30680534 -146293606 - AluSp SINE Alu -9 304 1 2288 255 72 43 chrX 30680534 30680634 -146293506 - L1MC4 LINE L1 -120 7922 7826 2264 101 0 7 chrX 30680634 30680931 -146293209 + AluSg SINE Alu 1 295 -15 2288 255 72 43 chrX 30680931 30681285 -146292855 - L1MC4 LINE L1 -216 7826 7484 2481 71 3 0 chrX 30681285 30681582 -146292558 - AluSp SINE Alu -15 298 1 2288 255 72 43 chrX 30681582 30682042 -146292098 - L1MC4 LINE L1 -558 7484 6971 1445 214 103 79 chrX 30682542 30682758 -146291382 - L1MC4a LINE L1 -1685 6123 5914 2372 81 3 0 chrX 30682758 30683054 -146291086 - AluSp SINE Alu -16 297 1 1445 214 103 79 chrX 30683054 30683429 -146290711 - L1MC4a LINE L1 -1894 5914 5518 363 283 35 112 chrX 30683717 30684003 -146290137 + HAL1b LINE L1 100 363 -985 330 306 90 90 chrX 30684057 30684524 -146289616 + L1ME LINE L1 4560 5026 -1120 2313 110 0 0 chrX 30684529 30684829 -146289311 + AluSx SINE Alu 1 300 -12 252 0 0 0 chrX 30684962 30684990 -146289150 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 8041 26 5 0 chrX 30684990 30685944 -146288196 - L1PA4 LINE L1 -12 6143 5188 1019 315 26 22 chrX 30686087 30686541 -146287599 + L1ME LINE L1 5328 5783 -338 216 0 0 0 chrX 30686563 30686587 -146287553 + (TA)n Simple_repeat Simple_repeat 2 25 0 257 320 13 0 chrX 30686628 30686703 -146287437 - MIR SINE MIR -10 252 177 1675 224 86 24 chrX 30686709 30686791 -146287349 + LTR33 LTR ERVL 1 77 -444 3217 140 88 2 chrX 30686791 30687305 -146286835 - LTR64 LTR ERVK 0 558 1 1675 224 86 24 chrX 30687305 30687713 -146286427 + LTR33 LTR ERVL 77 521 0 258 224 35 0 chrX 30687733 30687791 -146286349 - MIR SINE MIR -121 141 82 416 312 29 6 chrX 30687913 30688083 -146286057 + L2 LINE L2 2197 2370 -944 384 331 174 32 chrX 30688099 30688507 -146285633 + L2 LINE L2 2507 2972 -342 315 299 47 47 chrX 30688564 30688778 -146285362 + L2 LINE L2 3099 3312 -1 2463 70 3 0 chrX 30689112 30689411 -146284729 - AluSp SINE Alu -13 300 1 783 121 0 0 chrX 30689773 30689913 -146284227 + (CCCCG)n Simple_repeat Simple_repeat 4 143 0 229 310 23 8 chrX 30690413 30690542 -146283598 + (CCCCAG)n Simple_repeat Simple_repeat 6 136 0 516 269 65 32 chrX 30691977 30692163 -146281977 - MIR SINE MIR -7 255 64 339 25 0 0 chrX 30692421 30692461 -146281679 + (TG)n Simple_repeat Simple_repeat 1 40 0 380 201 0 38 chrX 30692470 30692654 -146281486 + (TA)n Simple_repeat Simple_repeat 2 178 0 216 67 0 0 chrX 30693338 30693368 -146280772 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 592 198 8 24 chrX 30693776 30693902 -146280238 + MER69 DNA AcHobo 2400 2523 -3 2030 151 6 6 chrX 30695265 30695582 -146278558 - L1PB4 LINE L1 -6 6150 5834 256 375 34 40 chrX 30696318 30696494 -146277646 - L3 LINE CR1 -12 1565 1391 24 32 0 0 chrX 30697594 30697625 -146276515 + AT_rich Low_complexity Low_complexity 1 31 0 211 318 8 48 chrX 30698824 30698950 -146275190 - MIR3 SINE MIR -80 128 8 195 211 0 105 chrX 30699813 30699889 -146274251 - L2 LINE L2 -185 3087 3020 391 255 53 0 chrX 30700605 30700699 -146273441 + MER103 DNA DNA 44 142 -24 428 0 0 19 chrX 30701141 30701194 -146272946 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 1592 267 111 64 chrX 30701580 30702249 -146271891 + L2 LINE L2 2324 3034 -279 1956 59 13 4 chrX 30702249 30702486 -146271654 + L1PA5 LINE L1 5912 6150 -4 1592 267 111 64 chrX 30702486 30702780 -146271360 + L2 LINE L2 3034 3313 0 770 277 110 25 chrX 30703279 30703752 -146270388 - L1ME LINE L1 -449 5721 5204 263 311 80 46 chrX 30704022 30704324 -146269816 - L1ME LINE L1 -1347 4799 4488 25 23 0 23 chrX 30704441 30704466 -146269674 + AT_rich Low_complexity Low_complexity 1 26 -16 2012 122 3 30 chrX 30704466 30704762 -146269378 + AluSg SINE Alu 1 288 -22 25 23 0 23 chrX 30704762 30704779 -146269361 + AT_rich Low_complexity Low_complexity 26 42 0 246 284 90 26 chrX 30704890 30705045 -146269095 - L1ME LINE L1 -1955 4191 4027 208 281 0 0 chrX 30705305 30705362 -146268778 - L2 LINE L2 -1370 1944 1888 377 327 111 13 chrX 30705376 30705602 -146268538 - MIR SINE MIR -1 261 14 45503 35 3 2 chrX 30705783 30711933 -146262207 - L1PA3 LINE L1 0 6155 2 544 265 135 20 chrX 30711978 30712106 -146262034 - L2 LINE L2 -9 3304 3143 261 0 0 0 chrX 30712106 30712135 -146262005 + (TG)n Simple_repeat Simple_repeat 2 30 0 544 265 135 20 chrX 30712135 30712206 -146261934 - L2 LINE L2 -170 3143 3082 376 260 10 0 chrX 30715143 30715247 -146258893 + L1ME LINE L1 5595 5699 -422 330 242 10 20 chrX 30715611 30715710 -146258430 - LTR16B LTR ERVL -12 452 355 423 236 130 0 chrX 30715735 30715858 -146258282 - L1MC5 LINE L1 -521 7440 7302 200 122 24 0 chrX 30715870 30715911 -146258229 + C-rich Low_complexity Low_complexity 5 46 0 2087 206 44 63 chrX 30715918 30716757 -146257383 - L1MC5 LINE L1 -658 7303 6476 3406 161 39 23 chrX 30717171 30717217 -146256923 + L1MC3 LINE L1 6601 6645 -1140 2537 63 0 0 chrX 30717217 30717517 -146256623 - AluY SINE Alu -11 300 1 3406 161 39 23 chrX 30717517 30718171 -146255969 + L1MC3 LINE L1 6645 7312 -473 255 31 0 0 chrX 30719286 30719318 -146254822 + (CA)n Simple_repeat Simple_repeat 2 33 0 342 0 0 0 chrX 30719873 30719911 -146254229 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2207 108 6 13 chrX 30720201 30720516 -146253624 - AluSq SINE Alu 0 313 1 379 289 43 52 chrX 30720517 30720749 -146253391 - MLT1J LTR MaLR -172 339 110 455 242 186 0 chrX 30720986 30721110 -146253030 + MER5A DNA MER1_type 11 157 -32 205 266 210 40 chrX 30721010 30721134 -146253006 - MER5A DNA MER1_type -23 166 22 * 424 308 57 19 chrX 30721223 30721382 -146252758 + MIR3 SINE MIR 30 194 -14 1968 151 0 19 chrX 30721853 30722164 -146251976 + AluSp SINE Alu 1 305 -8 1968 269 90 12 chrX 30723009 30723599 -146250541 + L2 LINE L2 2304 2939 -375 1503 130 0 0 chrX 30723618 30723834 -146250306 - AluSg/x SINE Alu -13 297 82 320 263 105 40 chrX 30723856 30724008 -146250132 - L1M4 LINE L1 -3309 2837 2676 780 202 11 0 chrX 30724021 30724199 -146249941 + L1MD3 LINE L1 7806 7985 -10 2274 199 69 19 chrX 30724309 30724877 -146249263 + L1ME2 LINE L1 5513 6108 -56 1612 117 8 0 chrX 30724908 30725173 -146248967 + L1MA8 LINE L1 6003 6269 -22 1633 166 87 6 chrX 30725290 30725622 -146248518 + MLT2D LTR ERVL 2 360 -54 243 133 0 0 chrX 30725631 30725676 -146248464 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 261 167 0 19 chrX 30725720 30725740 -146248400 + MLT2D LTR ERVL 462 481 -39 231 36 0 0 chrX 30725740 30725768 -146248372 + (TC)n Simple_repeat Simple_repeat 1 28 0 261 167 0 19 chrX 30725768 30725801 -146248339 + MLT2D LTR ERVL 481 514 -6 247 188 141 16 chrX 30726990 30727054 -146247086 + L2 LINE L2 3242 3313 0 2251 60 0 0 chrX 30727264 30727545 -146246595 - L1PA8 LINE L1 -5 6167 5887 740 11 0 0 chrX 30729000 30729090 -146245050 + L1PA2 LINE L1 6066 6155 0 188 217 14 0 chrX 30729090 30729150 -146244990 + GA-rich Low_complexity Low_complexity 8 71 0 275 256 87 35 chrX 30729182 30729354 -146244786 + L1ME4a LINE L1 5739 5919 -202 275 254 30 67 chrX 30729472 30729637 -146244503 - L1ME LINE L1 -276 5845 5687 30 89 0 0 chrX 30729782 30729861 -146244279 + AT_rich Low_complexity Low_complexity 1 79 0 272 286 43 14 chrX 30730347 30730487 -146243653 + L1ME4a LINE L1 5975 6118 -3 236 313 112 8 chrX 30731300 30731434 -146242706 + MIR SINE MIR 103 250 -12 477 315 37 59 chrX 30731906 30732230 -146241910 - L2 LINE L2 -1 3312 2996 * 856 292 82 72 chrX 30732206 30732709 -146241431 - L2 LINE L2 -448 2866 2359 315 256 0 26 chrX 30733479 30733557 -146240583 - L2 LINE L2 0 3272 3197 391 182 0 30 chrX 30733594 30733693 -146240447 + CT-rich Low_complexity Low_complexity 2 97 0 4442 151 52 13 chrX 30734485 30735304 -146238836 + MER21B LTR ERV1 1 851 -12 1597 259 38 45 chrX 30735607 30736044 -146238096 - L2 LINE L2 -4 3309 2873 2238 101 0 3 chrX 30736044 30736340 -146237800 + AluSc SINE Alu 1 295 -14 1597 259 38 45 chrX 30736340 30736587 -146237553 - L2 LINE L2 -440 2873 2626 5841 112 17 3 chrX 30736879 30737913 -146236227 - L1PA16 LINE L1 -11 6155 5105 606 157 22 135 chrX 30738322 30738449 -146235691 + MER3 DNA MER1_type 21 77 -85 2191 93 0 0 chrX 30738449 30738728 -146235412 - AluY SINE Alu -17 294 16 606 157 22 135 chrX 30738728 30738778 -146235362 + MER3 DNA MER1_type 77 131 -31 254 200 15 31 chrX 30739312 30739377 -146234763 - L2 LINE L2 -1 3271 3208 786 150 50 62 chrX 30739473 30739633 -146234507 + FRAM SINE Alu 1 158 -18 306 266 159 18 chrX 30739707 30739820 -146234320 - L2 LINE L2 -23 3249 3121 197 222 0 22 chrX 30740090 30740135 -146234005 + L2 LINE L2 3206 3249 -23 575 209 39 0 chrX 30740329 30740458 -146233682 - L1MA9 LINE L1 -37 6275 6142 1987 140 46 17 chrX 30740952 30741303 -146232837 + MER46B DNA MER2_type 1 236 0 48 43 0 0 chrX 30741373 30741442 -146232698 + AT_rich Low_complexity Low_complexity 1 69 0 485 287 36 36 chrX 30741485 30741764 -146232376 - L1MC4a LINE L1 -1915 5893 5615 2524 145 16 21 chrX 30741824 30742258 -146231882 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chrX 30742263 30742285 -146231855 + AT_rich Low_complexity Low_complexity 1 22 0 277 319 0 15 chrX 30743145 30743280 -146230860 - HAL1 LINE L1 -1602 905 773 15531 115 20 17 chrX 30744099 30745049 -146229091 + Tigger1 DNA MER2_type 1 946 -1472 2074 114 0 0 chrX 30745049 30745353 -146228787 - AluSx SINE Alu 0 304 1 15531 115 20 17 chrX 30745353 30746811 -146227329 + Tigger1 DNA MER2_type 946 2418 0 8652 78 3 5 chrX 30746983 30748233 -146225907 - L1P LINE L1 -1913 4233 2986 192 282 0 0 chrX 30749895 30749973 -146224167 + CT-rich Low_complexity Low_complexity 4 81 0 184 325 25 50 chrX 30750117 30750197 -146223943 - L2 LINE L2 -8 3305 3228 355 244 13 13 chrX 30750549 30750627 -146223513 + L2 LINE L2 3186 3263 -50 252 229 96 60 chrX 30750802 30750968 -146223172 - L1 LINE L1 -1100 5046 4875 235 220 20 0 chrX 30751084 30751134 -146223006 + GA-rich Low_complexity Low_complexity 2 52 0 21 0 0 0 chrX 30751201 30751222 -146222918 + AT_rich Low_complexity Low_complexity 1 21 0 1237 20 0 0 chrX 30752989 30753135 -146221005 - L1PA4 LINE L1 -483 5672 5527 4069 23 2 0 chrX 30753135 30753605 -146220535 + L1PA4 LINE L1 5677 6151 -4 21 36 0 0 chrX 30755135 30755163 -146218977 + AT_rich Low_complexity Low_complexity 1 28 0 706 86 9 0 chrX 30755314 30755419 -146218721 + L1MA2 LINE L1 6199 6304 0 395 353 0 9 chrX 30755556 30755672 -146218468 + MIR SINE MIR 16 130 -78 505 152 19 29 chrX 30755791 30755896 -146218244 - L1MB8 LINE L1 0 6178 6075 2272 128 19 25 chrX 30756292 30756658 -146217482 - THE1B LTR MaLR 0 364 1 205 297 139 10 chrX 30756688 30756789 -146217351 - L2 LINE L2 -5 3267 3154 2204 165 61 10 chrX 30757154 30757561 -146216579 - MSTA LTR MaLR 0 428 1 1973 147 9 9 chrX 30758721 30759068 -146215072 - MER47A DNA MER2_type 0 366 20 567 286 16 31 chrX 30759449 30759641 -146214499 + MIR SINE MIR 19 207 -55 763 247 12 0 chrX 30759647 30759754 -146214386 + MIR SINE MIR 3 114 -148 1716 251 22 16 chrX 30759754 30760201 -146213939 - LTR16A LTR ERVL 0 450 1 763 247 12 0 chrX 30760201 30760255 -146213885 + MIR SINE MIR 114 166 -96 267 333 56 28 chrX 30760303 30760447 -146213693 - MIR3 SINE MIR 0 208 61 25 31 0 0 chrX 30761962 30761994 -146212146 + AT_rich Low_complexity Low_complexity 1 32 0 231 378 199 20 chrX 30762214 30762566 -146211574 - L2 LINE L2 0 3272 2858 456 258 39 26 chrX 30763156 30763311 -146210829 - MIR3 SINE MIR -6 202 46 2118 186 47 23 chrX 30764263 30764650 -146209490 - MSTD LTR MaLR 0 396 1 1903 125 56 0 chrX 30764817 30765105 -146209035 + AluSx SINE Alu 1 304 -8 225 94 0 0 chrX 30765607 30765639 -146208501 + (TA)n Simple_repeat Simple_repeat 1 32 0 2512 21 0 7 chrX 30765639 30765918 -146208222 - L1PA5 LINE L1 -7 6147 5871 186 296 19 0 chrX 30766925 30766979 -146207161 + MER5B DNA MER1_type 4 58 -120 2094 136 0 0 chrX 30767255 30767541 -146206599 + AluSx SINE Alu 1 286 -26 219 36 0 0 chrX 30767541 30767569 -146206571 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 410 310 76 16 chrX 30767668 30767852 -146206288 - LTR16C LTR ERVL 0 491 297 201 162 0 0 chrX 30768110 30768147 -146205993 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 673 254 109 109 chrX 30770247 30770833 -146203307 + MLT1L LTR MaLR 22 607 -8 24 0 0 0 chrX 30770900 30770924 -146203216 + AT_rich Low_complexity Low_complexity 1 24 0 309 260 96 41 chrX 30770990 30771136 -146203004 - MIR SINE MIR -106 156 3 1213 274 65 26 chrX 30771341 30771466 -146202674 - L2 LINE L2 -8 3305 3186 212 0 36 0 chrX 30771466 30771494 -146202646 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1213 274 65 26 chrX 30771494 30771956 -146202184 - L2 LINE L2 -127 3186 2689 873 288 41 2 chrX 30771956 30772337 -146201803 + LTR16A LTR ERVL 1 445 -5 264 284 28 55 chrX 30772352 30772461 -146201679 - L2 LINE L2 -635 2679 2574 302 256 12 0 chrX 30772491 30772577 -146201563 - L2 LINE L2 -997 2317 2231 208 356 19 29 chrX 30773754 30773858 -146200282 + L2 LINE L2 2943 3045 -227 393 69 17 0 chrX 30775642 30775700 -146198440 - L1P LINE L1 -749 5405 5347 1857 126 0 4 chrX 30775700 30775964 -146198176 + L1PB1 LINE L1 5876 6143 -8 304 350 122 21 chrX 30776025 30776429 -146197711 - L2 LINE L2 -259 3054 2624 199 220 17 51 chrX 30776627 30776686 -146197454 - MIR SINE MIR -198 64 8 2043 214 37 0 chrX 30776808 30777237 -146196903 + MER110 LTR ERV1 47 491 0 2404 171 106 11 chrX 30777692 30778153 -146195987 + MLT1D LTR MaLR 1 505 0 255 61 0 0 chrX 30778824 30778857 -146195283 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2468 60 30 0 chrX 30778902 30779201 -146194939 + L1PA8 LINE L1 5864 6171 -1 359 155 146 39 chrX 30780048 30780151 -146193989 + L2 LINE L2 3197 3310 -3 33 0 0 0 chrX 30781489 30781522 -146192618 + AT_rich Low_complexity Low_complexity 1 33 0 2539 68 0 3 chrX 30781522 30781832 -146192308 - AluSc SINE Alu 0 309 1 2244 114 0 0 chrX 30781832 30782122 -146192018 - AluSq SINE Alu -19 294 5 231 297 78 0 chrX 30782343 30782407 -146191733 + L3 LINE CR1 1492 1560 -17 521 287 126 17 chrX 30782708 30782938 -146191202 + LTR16A LTR ERVL 196 450 0 400 277 78 21 chrX 30783047 30783188 -146190952 - MIR3 SINE MIR -28 180 32 414 309 16 11 chrX 30791056 30791193 -146182947 - MIR3 SINE MIR -50 158 22 221 97 0 0 chrX 30791176 30791207 -146182933 + L2 LINE L2 3271 3301 -12 * 1735 171 7 7 chrX 30791393 30791680 -146182460 - AluJb SINE Alu -25 287 1 398 318 52 23 chrX 30792041 30792214 -146181926 + MER5B DNA MER1_type 1 178 0 1032 210 55 143 chrX 30792437 30792871 -146181269 + MSTD LTR MaLR 1 396 0 207 182 0 0 chrX 30793421 30793454 -146180686 + polypurine Low_complexity Low_complexity 2 34 0 326 294 96 55 chrX 30794138 30794284 -146179856 + L2 LINE L2 3121 3272 0 456 148 20 69 chrX 30794537 30794638 -146179502 + LTR16A LTR ERVL 235 330 -120 21 0 0 0 chrX 30795949 30795970 -146178170 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 30796067 30796090 -146178050 + (A)n Simple_repeat Simple_repeat 1 23 0 268 174 101 0 chrX 30797943 30798012 -146176128 - MIR SINE MIR -70 192 117 1555 73 0 0 chrX 30799540 30799731 -146174409 + AluSg/x SINE Alu 114 304 -8 2287 118 0 0 chrX 30800002 30800307 -146173833 - AluSq SINE Alu -8 305 1 817 159 0 28 chrX 30800441 30800586 -146173554 + FLAM_C SINE Alu 1 141 -2 8930 110 17 34 chrX 30802270 30804110 -146170030 + L1P3 LINE L1 12 1713 -4433 1857 164 7 3 chrX 30805120 30805295 -146168845 - AluJo SINE Alu -13 299 121 261 0 0 0 chrX 30805295 30805324 -146168816 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1857 164 7 3 chrX 30805324 30805446 -146168694 - AluJo SINE Alu -191 121 1 968 169 11 6 chrX 30805697 30805874 -146168266 - L1MB8 LINE L1 -3 6175 5998 8651 181 36 19 chrX 30805884 30808024 -146166116 - L1MB8 LINE L1 -588 5596 3416 465 267 53 7 chrX 30808100 30808250 -146165890 + MER103 DNA DNA 3 159 -7 727 133 7 44 chrX 30810397 30810532 -146163608 + L1MB3 LINE L1 6042 6171 -12 28 0 0 0 chrX 30812792 30812820 -146161320 + AT_rich Low_complexity Low_complexity 1 28 0 831 129 0 16 chrX 30812820 30812944 -146161196 - FLAM_C SINE Alu -11 132 11 262 62 0 0 chrX 30812988 30813020 -146161120 + U2 snRNA snRNA 4 35 -153 449 260 20 41 chrX 30813275 30813421 -146160719 + L2 LINE L2 3158 3300 -13 420 286 167 11 chrX 30814736 30814952 -146159188 + MIR SINE MIR 16 262 0 2441 79 0 22 chrX 30815183 30815501 -146158639 - AluY SINE Alu 0 311 1 2100 149 0 3 chrX 30816191 30816500 -146157640 - AluJb SINE Alu -4 308 1 507 248 30 8 chrX 30816864 30816997 -146157143 + MIR SINE MIR 79 214 -48 249 33 0 0 chrX 30818138 30818168 -146155972 + (TG)n Simple_repeat Simple_repeat 2 31 0 211 205 0 0 chrX 30818354 30818393 -146155747 + A-rich Low_complexity Low_complexity 2 40 0 23 0 0 0 chrX 30819318 30819341 -146154799 + AT_rich Low_complexity Low_complexity 1 23 0 253 269 15 0 chrX 30819453 30819520 -146154620 - L1MEd LINE L1 -5453 666 599 399 41 0 0 chrX 30819898 30819947 -146154193 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 284 73 41 chrX 30820074 30820549 -146153591 - L1 LINE L1 -2378 3768 3244 1754 179 37 3 chrX 30820549 30820846 -146153294 - AluJo SINE Alu -5 307 1 596 284 73 41 chrX 30820846 30821181 -146152959 - L1 LINE L1 -2902 3244 2921 452 272 87 42 chrX 30821320 30821769 -146152371 + L1MEd LINE L1 729 1197 -5008 518 286 95 67 chrX 30821776 30822059 -146152081 + HAL1 LINE L1 1279 1569 -938 302 320 35 51 chrX 30822485 30822682 -146151458 + L1MEd LINE L1 2093 2286 -4110 1230 112 6 0 chrX 30822682 30822874 -146151266 + AluSg/x SINE Alu 114 306 0 3762 187 200 10 chrX 30823085 30824149 -146149991 - L1MD3 LINE L1 -10 7985 6720 951 216 69 0 chrX 30824589 30824807 -146149333 + MIR SINE MIR 20 252 -10 279 54 0 0 chrX 30825757 30825794 -146148346 + (CA)n Simple_repeat Simple_repeat 2 38 0 1983 103 49 0 chrX 30825794 30826057 -146148083 - AluSx SINE Alu -36 276 1 304 315 14 62 chrX 30826871 30827017 -146147123 - MIR SINE MIR -57 205 67 2858 10 0 0 chrX 30827027 30827338 -146146802 + AluY SINE Alu 1 311 0 711 172 77 50 chrX 30827381 30827642 -146146498 + Charlie1 DNA MER1_type 2453 2720 -41 360 303 63 7 chrX 30827757 30827899 -146146241 + MIR SINE MIR 51 200 -62 6719 87 19 10 chrX 30828763 30829775 -146144365 - L1MA2 LINE L1 -4 6300 5280 881 225 92 29 chrX 30830011 30830251 -146143889 - MIR SINE MIR 0 262 8 563 294 81 9 chrX 30830278 30830489 -146143651 - MIR SINE MIR -17 245 20 268 160 0 0 chrX 30830491 30830541 -146143599 - L1MA10 LINE L1 -2 6332 6283 216 0 0 0 chrX 30830769 30830793 -146143347 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1048 222 54 84 chrX 30830793 30831221 -146142919 - L2 LINE L2 -13 3300 2886 371 156 0 22 chrX 30831761 30831851 -146142289 + (TGGA)n Simple_repeat Simple_repeat 2 89 0 1486 245 81 37 chrX 30832774 30833427 -146140713 + L1ME3A LINE L1 5485 6166 -4 444 103 13 13 chrX 30833435 30833513 -146140627 + L1MB8 LINE L1 6092 6169 -9 410 196 10 0 chrX 30834106 30834203 -146139937 + CT-rich Low_complexity Low_complexity 2 99 0 1349 282 183 8 chrX 30834375 30835095 -146139045 + L2 LINE L2 2454 3313 0 1337 133 12 8 chrX 30835165 30835405 -146138735 - L1MB7 LINE L1 -256 5928 5688 280 241 136 34 chrX 30835409 30835536 -146138604 - MIR SINE MIR -63 145 19 1426 266 25 18 chrX 30836230 30836677 -146137463 + LTR16A LTR ERVL 1 450 0 205 321 45 37 chrX 30837772 30837906 -146136234 + MIR SINE MIR 127 261 -1 517 213 102 0 chrX 30837997 30838124 -146136016 + MIR SINE MIR 77 216 -46 317 281 89 60 chrX 30838907 30839099 -146135041 - MIR SINE MIR -34 174 17 417 189 0 0 chrX 30839880 30839970 -146134170 + (CAT)n Simple_repeat Simple_repeat 2 91 0 804 277 29 25 chrX 30839970 30840212 -146133928 - MIR SINE MIR -1 261 19 2523 81 0 0 chrX 30840231 30840538 -146133602 - AluSx SINE Alu -5 307 1 2262 114 3 0 chrX 30841467 30841764 -146132376 + AluSx SINE Alu 1 298 -14 288 200 0 0 chrX 30841878 30841938 -146132202 + (CA)n Simple_repeat Simple_repeat 1 60 0 653 252 13 0 chrX 30841964 30842119 -146132021 + L2 LINE L2 2687 2843 -471 464 269 81 0 chrX 30842123 30842272 -146131868 - MER63A DNA MER1_type -6 204 44 566 248 66 129 chrX 30842312 30842630 -146131510 + L2 LINE L2 2853 3150 -163 422 212 40 10 chrX 30843112 30843211 -146130929 + L2 LINE L2 3151 3252 -61 820 273 144 73 chrX 30843472 30843576 -146130564 - L2 LINE L2 -2 3311 3216 1764 174 22 68 chrX 30843576 30843991 -146130149 - MSTD LTR MaLR 0 396 1 820 273 144 73 chrX 30843991 30844229 -146129911 - L2 LINE L2 -97 3216 2925 1301 224 96 76 chrX 30844229 30844769 -146129371 - MLT1H1 LTR MaLR 0 555 5 820 273 144 73 chrX 30844769 30844890 -146129250 - L2 LINE L2 -388 2925 2814 626 332 32 22 chrX 30845768 30846019 -146128121 + MIR SINE MIR 12 262 0 1469 142 76 7 chrX 30846931 30847234 -146126906 + MER33 DNA MER1_type 1 324 0 375 23 0 0 chrX 30848059 30848103 -146126037 + (TG)n Simple_repeat Simple_repeat 2 45 0 374 258 12 43 chrX 30848407 30848570 -146125570 - HAL1b LINE L1 -19 1329 1172 220 196 0 22 chrX 30848571 30848617 -146125523 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 191 170 21 0 chrX 30848625 30848672 -146125468 + GA-rich Low_complexity Low_complexity 4 51 0 497 217 92 20 chrX 30848698 30848850 -146125290 - HAL1b LINE L1 -200 1148 986 431 267 95 35 chrX 30848861 30849146 -146124994 - HAL1b LINE L1 -413 935 634 2229 139 78 24 chrX 30849446 30849856 -146124284 + Tigger2a DNA MER2_type 3 434 0 218 213 21 0 chrX 30850211 30850258 -146123882 + MIR SINE MIR 104 151 -111 1068 61 0 0 chrX 30854430 30854562 -146119578 - AluSq/x SINE Alu -180 132 1 25 51 0 0 chrX 30856085 30856124 -146118016 + AT_rich Low_complexity Low_complexity 1 39 0 566 287 146 25 chrX 30857422 30858087 -146116053 - L1ME4a LINE L1 -2 6119 5373 21 0 0 0 chrX 30858162 30858183 -146115957 + AT_rich Low_complexity Low_complexity 1 21 0 3028 259 67 9 chrX 30858738 30859750 -146114390 + L1MEc LINE L1 536 1606 -5219 1190 110 0 0 chrX 30859752 30859925 -146114215 + MER7A DNA MER2_type 3 173 -173 295 48 24 0 chrX 30859923 30859965 -146114175 + MER30B DNA MER1_type 13 55 -135 * 1293 129 51 14 chrX 30859976 30860193 -146113947 + MER30B DNA MER1_type 6 230 0 728 152 179 0 chrX 30860193 30860336 -146113804 + MER7A DNA MER2_type 165 333 -3 380 273 34 34 chrX 30860340 30860578 -146113562 + L1MEc LINE L1 1472 1709 -4833 562 125 29 29 chrX 30861135 30861239 -146112901 - MLT1D LTR MaLR 0 505 402 1986 134 3 27 chrX 30861333 30861632 -146112508 + AluSx SINE Alu 1 292 -20 2329 127 0 6 chrX 30863203 30863564 -146110576 + L1PA13 LINE L1 5805 6163 0 32 0 0 0 chrX 30863590 30863622 -146110518 + AT_rich Low_complexity Low_complexity 1 32 0 25 90 0 0 chrX 30863795 30863862 -146110278 + AT_rich Low_complexity Low_complexity 1 67 0 195 114 0 0 chrX 30864351 30864386 -146109754 + (T)n Simple_repeat Simple_repeat 1 35 0 336 290 109 7 chrX 30864410 30864548 -146109592 + MIR SINE MIR 110 261 -1 2603 145 21 5 chrX 30864625 30865046 -146109094 - MSTA LTR MaLR 0 428 1 2059 144 0 3 chrX 30865095 30865407 -146108733 - AluSx SINE Alu -1 311 1 565 330 165 17 chrX 30865482 30865888 -146108252 + L3 LINE CR1 177 642 -935 430 311 20 20 chrX 30865866 30866014 -146108126 - MIR SINE MIR -52 210 63 * 400 218 98 30 chrX 30866013 30866146 -146107994 + MIR SINE MIR 44 185 -77 * 978 95 0 14 chrX 30866362 30866509 -146107631 + L1PA16 LINE L1 6021 6165 -1 185 259 154 86 chrX 30867668 30867830 -146106310 + L3b LINE CR1 1248 1420 -163 249 294 265 10 chrX 30867884 30867986 -146106154 + MIR3 SINE MIR 30 157 -51 278 171 0 0 chrX 30868265 30868306 -146105834 - AluJ/FLAM SINE Alu -245 57 17 1766 147 4 0 chrX 30868306 30868565 -146105575 - AluSx SINE Alu -48 264 5 1985 168 7 0 chrX 30868578 30868888 -146105252 - AluJb SINE Alu 0 312 1 305 323 135 65 chrX 30869260 30869467 -146104673 - L2 LINE L2 -99 3173 2931 627 200 49 27 chrX 30869467 30869652 -146104488 - MER53 DNA DNA 0 189 1 305 323 135 65 chrX 30869652 30869785 -146104355 - L2 LINE L2 -341 2931 2809 2178 100 0 0 chrX 30870318 30870626 -146103514 - AluSc SINE Alu 0 308 1 1755 170 31 10 chrX 30871471 30871489 -146102651 - AluJb SINE Alu -17 295 279 489 17 0 0 chrX 30871489 30871547 -146102593 + (TG)n Simple_repeat Simple_repeat 1 58 0 1755 170 31 10 chrX 30871547 30871817 -146102323 - AluJb SINE Alu -33 279 1 289 320 173 33 chrX 30871842 30871992 -146102148 + L2 LINE L2 3102 3272 0 251 324 0 18 chrX 30872415 30872526 -146101614 + MLT1I LTR MaLR 1 109 -300 238 161 25 99 chrX 30872563 30872644 -146101496 + CT-rich Low_complexity Low_complexity 3 77 0 267 293 0 40 chrX 30875339 30875438 -146098702 + LTR67 LTR ERVL 435 529 -28 189 0 0 0 chrX 30876140 30876161 -146097979 + (A)n Simple_repeat Simple_repeat 1 21 0 455 300 152 19 chrX 30876339 30876662 -146097478 + LTR16C LTR ERVL 123 488 -3 252 0 0 0 chrX 30876799 30876827 -146097313 + (TG)n Simple_repeat Simple_repeat 2 29 0 241 351 96 29 chrX 30878294 30878639 -146095501 - L1MEd LINE L1 -5664 455 88 21 36 0 0 chrX 30878642 30878670 -146095470 + AT_rich Low_complexity Low_complexity 1 28 0 1379 169 14 21 chrX 30878727 30879006 -146095134 - L1MB5 LINE L1 0 6174 5898 26 0 0 0 chrX 30879191 30879217 -146094923 + AT_rich Low_complexity Low_complexity 1 26 0 2108 112 0 3 chrX 30879227 30879514 -146094626 - AluSx SINE Alu -26 286 1 1063 148 14 56 chrX 30880304 30880417 -146093723 + MER20 DNA MER1_type 1 102 -117 1214 223 37 72 chrX 30880417 30880793 -146093347 - MLT1A1 LTR MaLR 0 365 3 1063 148 14 56 chrX 30880793 30880895 -146093245 + MER20 DNA MER1_type 102 207 -12 1921 128 32 4 chrX 30881053 30881334 -146092806 + AluSx SINE Alu 7 295 -17 212 341 87 48 chrX 30881821 30881947 -146092193 - L2 LINE L2 0 3272 3142 826 144 32 27 chrX 30882086 30882274 -146091866 - MER53 DNA DNA 0 189 1 2190 131 0 0 chrX 30882483 30882796 -146091344 - AluSq SINE Alu 0 313 1 349 93 0 0 chrX 30882802 30882856 -146091284 + MADE1 DNA Mariner 27 80 0 230 0 0 32 chrX 30882988 30883019 -146091121 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 737 263 59 27 chrX 30884066 30884439 -146089701 - L1MC5 LINE L1 -48 7913 7529 893 120 0 54 chrX 30884621 30884805 -146089335 - L1MA7 LINE L1 -2 6289 6116 24 0 0 0 chrX 30885273 30885297 -146088843 + AT_rich Low_complexity Low_complexity 1 24 0 667 199 14 0 chrX 30885354 30885500 -146088640 - MLT1A2 LTR MaLR -8 366 219 301 325 0 0 chrX 30885786 30885906 -146088234 - L1P LINE L1 -1126 5020 4901 2430 210 33 18 chrX 30885931 30886720 -146087420 + L1MC4 LINE L1 6941 7893 -149 266 146 18 0 chrX 30886732 30886787 -146087353 + L1MC4 LINE L1 7986 8041 -1 4013 154 33 29 chrX 30886969 30887527 -146086613 + L1MA9 LINE L1 4509 5064 -1248 216 0 0 0 chrX 30887527 30887551 -146086589 + (TTG)n Simple_repeat Simple_repeat 2 25 0 4013 154 33 29 chrX 30887551 30888510 -146085630 + L1MA9 LINE L1 5064 6041 -271 802 175 0 0 chrX 30889315 30889441 -146084699 - FLAM_C SINE Alu -7 126 1 290 299 0 23 chrX 30890772 30890859 -146083281 + L2 LINE L2 3188 3272 0 695 353 90 21 chrX 30891045 30891422 -146082718 + L2 LINE L2 2869 3271 -1 448 186 12 23 chrX 30891524 30891610 -146082530 + MER5A DNA MER1_type 10 94 -95 1230 197 182 3 chrX 30892075 30892410 -146081730 - MSTD LTR MaLR -1 395 1 285 29 0 0 chrX 30893388 30893422 -146080718 + (TTTTC)n Simple_repeat Simple_repeat 3 36 0 293 248 248 16 chrX 30893446 30893571 -146080569 + MIR SINE MIR 109 262 0 221 171 0 0 chrX 30893919 30893960 -146080180 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 188 35 35 0 chrX 30896083 30896112 -146078028 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 421 331 104 19 chrX 30896292 30896637 -146077503 - L2 LINE L2 -190 3082 2718 1210 192 77 0 chrX 30897800 30897878 -146076262 + AluJo SINE Alu 39 110 -202 342 0 0 0 chrX 30897878 30897916 -146076224 + (CA)n Simple_repeat Simple_repeat 1 38 0 1210 192 77 0 chrX 30897916 30898071 -146076069 + AluJo SINE Alu 110 290 -22 433 305 68 16 chrX 30898083 30898273 -146075867 + MIR SINE MIR 22 221 -41 37 23 0 0 chrX 30898731 30898775 -146075365 + AT_rich Low_complexity Low_complexity 1 44 0 971 230 102 17 chrX 30899106 30899341 -146074799 + MIR SINE MIR 8 262 0 218 296 114 0 chrX 30899700 30899788 -146074352 + MIR3 SINE MIR 2 99 -109 348 248 92 18 chrX 30899798 30899907 -146074233 + L1ME4a LINE L1 5993 6109 -12 2070 120 0 3 chrX 30900065 30900378 -146073762 + AluSx SINE Alu 1 312 0 2302 83 0 0 chrX 30902350 30902652 -146071488 + AluSc SINE Alu 1 302 -7 262 222 60 34 chrX 30903390 30903507 -146070633 - L1ME4a LINE L1 -9 6112 5993 558 275 150 4 chrX 30903587 30903867 -146070273 - L1ME4a LINE L1 -254 5867 5547 325 238 48 12 chrX 30904635 30904719 -146069421 - L2 LINE L2 0 3313 3227 642 275 76 9 chrX 30905063 30905362 -146068778 + LTR16A LTR ERVL 66 439 -11 2411 86 0 0 chrX 30905500 30905803 -146068337 - AluY SINE Alu 0 311 9 256 309 55 50 chrX 30906285 30906505 -146067635 - L2 LINE L2 -2239 1075 855 228 208 104 0 chrX 30907362 30907410 -146066730 - L2 LINE L2 -6 3266 3214 261 57 0 0 chrX 30907434 30907469 -146066671 + (CA)n Simple_repeat Simple_repeat 2 36 0 708 230 106 18 chrX 30909232 30909458 -146064682 + LTR16C LTR ERVL 91 336 -155 2091 124 9 0 chrX 30909577 30909908 -146064232 - L1MB3 LINE L1 -1 6182 5849 321 372 99 21 chrX 30910128 30910370 -146063770 + L2 LINE L2 2688 2948 -366 3159 162 12 18 chrX 30910730 30911330 -146062810 - L1MB7 LINE L1 -1 6183 5588 241 177 32 16 chrX 30911992 30912054 -146062086 + (TA)n Simple_repeat Simple_repeat 2 64 0 211 264 14 14 chrX 30912096 30912168 -146061972 + (TA)n Simple_repeat Simple_repeat 2 73 0 401 296 72 56 chrX 30912782 30913265 -146060875 - L1ME4a LINE L1 -97 6024 5534 270 0 0 0 chrX 30914438 30914468 -146059672 + (CA)n Simple_repeat Simple_repeat 2 31 0 3099 289 143 35 chrX 30915102 30916911 -146057229 - L2 LINE L2 -11 3302 1289 220 320 127 23 chrX 30917694 30917953 -146056187 - L2 LINE L2 -180 3092 2807 2146 101 4 0 chrX 30918845 30919122 -146055018 + AluSp SINE Alu 1 278 -35 702 35 0 0 chrX 30919123 30919208 -146054932 + (TC)n Simple_repeat Simple_repeat 2 86 0 297 0 0 0 chrX 30919207 30919240 -146054900 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 2628 136 21 23 chrX 30919413 30919847 -146054293 + Tigger2a DNA MER2_type 1 433 -1 2278 108 0 0 chrX 30919941 30920237 -146053903 + AluSx SINE Alu 1 296 -16 25 31 0 0 chrX 30920275 30920307 -146053833 + AT_rich Low_complexity Low_complexity 1 32 0 291 54 0 0 chrX 30920888 30920925 -146053215 + (CA)n Simple_repeat Simple_repeat 1 37 0 3284 68 5 0 chrX 30921642 30922068 -146052072 - L1PA8 LINE L1 -9 6163 5736 2497 156 26 13 chrX 30922362 30922823 -146051317 - MLT1C LTR MaLR 0 467 1 1732 60 0 9 chrX 30923027 30923245 -146050895 - AluY SINE Alu 0 311 96 463 49 0 0 chrX 30923245 30923306 -146050834 - AluY SINE Alu -249 61 1 404 256 15 118 chrX 30923748 30923951 -146050189 - L1MC4 LINE L1 -40 8002 7821 280 299 0 0 chrX 30924182 30924259 -146049881 - MIR SINE MIR -117 145 69 834 122 0 0 chrX 30924862 30924985 -146049155 + L1MA3 LINE L1 6183 6305 0 21 82 0 0 chrX 30925102 30925151 -146048989 + AT_rich Low_complexity Low_complexity 1 49 0 427 296 143 25 chrX 30926143 30926346 -146047794 + MIR SINE MIR 36 262 0 225 159 91 0 chrX 30926558 30926602 -146047538 - L2 LINE L2 -4 3268 3221 427 237 17 172 chrX 30926663 30926895 -146047245 + MER91A DNA MER1_type 1 196 0 832 204 168 5 chrX 30926979 30927175 -146046965 + MIR SINE MIR 32 259 -3 2052 111 0 3 chrX 30927494 30927817 -146046323 + AluSx SINE Alu 24 312 0 539 260 141 6 chrX 30928726 30928903 -146045237 + MIR SINE MIR 12 212 -50 2230 94 0 3 chrX 30928957 30929263 -146044877 - AluSx SINE Alu 0 305 1 571 285 172 5 chrX 30930712 30930898 -146043242 + MIR SINE MIR 1 217 -45 2298 188 54 51 chrX 30931313 30931865 -146042275 - MLT2B3 LTR ERVL 0 554 1 489 47 0 0 chrX 30932903 30932967 -146041173 + (TG)n Simple_repeat Simple_repeat 1 64 0 22 0 0 0 chrX 30933099 30933121 -146041019 + AT_rich Low_complexity Low_complexity 1 22 0 5374 139 34 30 chrX 30933121 30934907 -146039233 - L1MA7 LINE L1 0 6291 4498 263 297 30 0 chrX 30935167 30935268 -146038872 - Tigger8 DNA MER2_type -100 566 463 264 26 26 0 chrX 30935268 30935307 -146038833 - L1PA7 LINE L1 -5 6149 6110 * 3718 94 4 20 chrX 30935290 30935833 -146038307 - L1P3 LINE L1 -5924 537 4 240 209 0 0 chrX 30935885 30935928 -146038212 - L2 LINE L2 -10 3303 3261 235 342 56 82 chrX 30936905 30937101 -146037039 - MIR3 SINE MIR -1 207 17 195 162 0 0 chrX 30937117 30937154 -146036986 + GA-rich Low_complexity Low_complexity 3 39 0 2145 178 0 5 chrX 30937253 30937635 -146036505 + MLT1B LTR MaLR 1 380 -10 24 0 0 0 chrX 30938548 30938572 -146035568 + AT_rich Low_complexity Low_complexity 1 24 0 204 190 17 17 chrX 30938610 30938668 -146035472 + (TTA)n Simple_repeat Simple_repeat 1 58 0 376 160 7 43 chrX 30938682 30938972 -146035168 + (TA)n Simple_repeat Simple_repeat 1 279 0 28600 94 26 10 chrX 30938995 30944583 -146029557 - L1PA7 LINE L1 -15 6454 742 760 177 0 34 chrX 30944730 30944877 -146029263 - FLAM_C SINE Alu 0 143 2 1235 241 138 0 chrX 30945750 30946098 -146028042 - MSTD LTR MaLR 0 396 1 243 171 186 57 chrX 30946571 30946641 -146027499 + MSTD LTR MaLR 174 252 -144 * 342 276 39 31 chrX 30946639 30946766 -146027374 - MLT1H LTR MaLR -29 520 393 1045 165 6 6 chrX 30946771 30946953 -146027187 - MER58A DNA MER1_type -1 223 42 231 233 0 0 chrX 30947002 30947045 -146027095 - MLT1H LTR MaLR -195 354 312 306 260 13 0 chrX 30947090 30947167 -146026973 - MLT1H LTR MaLR -392 157 80 608 309 15 10 chrX 30947957 30948161 -146025979 - MIR SINE MIR -17 245 41 1810 144 11 107 chrX 30948710 30949092 -146025048 + Tigger3(Golem) DNA MER2_type 1 3025 -4 289 267 233 0 chrX 30949301 30949391 -146024749 + MIR SINE MIR 20 130 -132 1195 171 6 124 chrX 30949493 30949849 -146024291 + MLT1D LTR MaLR 1 314 -191 1003 175 6 129 chrX 30949847 30950173 -146023967 - MLT1D LTR MaLR -148 357 72 * 298 266 7 58 chrX 30950340 30950494 -146023646 - L2 LINE L2 -158 3155 3010 586 186 86 43 chrX 30950913 30951053 -146023087 + L2 LINE L2 3168 3313 0 1381 215 95 44 chrX 30951419 30951829 -146022311 + MER74A LTR ERVL 1 431 -127 2965 132 36 7 chrX 30952244 30952830 -146021310 + L1M2 LINE L1 5199 5801 -511 2574 193 2 4 chrX 30952814 30953359 -146020781 + L1P LINE L1 4397 4940 -1206 * 1320 129 0 30 chrX 30953361 30953563 -146020577 + AluSg/x SINE Alu 100 295 -17 1015 138 144 0 chrX 30953579 30953746 -146020394 - AluSx SINE Alu -87 225 35 565 147 0 0 chrX 30953746 30953841 -146020299 - L1P LINE L1 -1161 4985 4891 237 289 87 0 chrX 30953986 30954090 -146020050 + L2 LINE L2 2972 3084 -188 716 247 50 0 chrX 30954507 30954726 -146019414 + L1M4 LINE L1 4896 5125 -1021 424 228 9 18 chrX 30954968 30955082 -146019058 + L1MC4 LINE L1 7777 7889 -153 253 224 26 13 chrX 30955083 30955159 -146018981 + (TA)n Simple_repeat Simple_repeat 2 78 0 455 241 54 24 chrX 30955199 30955365 -146018775 + L1MC4 LINE L1 7853 8023 -19 210 363 32 38 chrX 30955403 30955560 -146018580 - L3 LINE CR1 -210 1367 1212 184 280 243 9 chrX 30956846 30956953 -146017187 + MIR3 SINE MIR 59 190 -18 361 324 0 0 chrX 30957421 30957523 -146016617 + MIR SINE MIR 48 149 -113 1680 160 15 0 chrX 30957543 30957812 -146016328 + AluJo SINE Alu 9 281 -31 193 423 21 10 chrX 30958868 30958965 -146015175 - MIR SINE MIR -78 130 33 1080 179 19 19 chrX 30959159 30959422 -146014718 + MER33 DNA MER1_type 62 324 0 2289 117 3 0 chrX 30960111 30960418 -146013722 - AluSx SINE Alu -4 308 1 897 232 11 76 chrX 30960676 30960939 -146013201 - MIR SINE MIR 0 262 17 211 292 0 0 chrX 30961133 30961181 -146012959 + MIR3 SINE MIR 133 180 -28 294 265 69 0 chrX 30961669 30961771 -146012369 + MIR SINE MIR 130 238 -24 359 83 17 0 chrX 30961802 30961862 -146012278 + (TTTTG)n Simple_repeat Simple_repeat 1 61 0 535 165 82 0 chrX 30961865 30961962 -146012178 - FLAM_A SINE Alu -37 105 1 229 371 76 0 chrX 30962488 30962593 -146011547 + L2 LINE L2 3133 3245 -27 597 289 61 2 chrX 30962743 30963020 -146011120 - LTR16A LTR ERVL 0 450 92 306 374 49 0 chrX 30964460 30964623 -146009517 + MIR3 SINE MIR 36 206 -2 504 308 8 0 chrX 30967238 30967358 -146006782 + MER5B DNA MER1_type 58 178 0 195 42 0 0 chrX 30967523 30967547 -146006593 + (A)n Simple_repeat Simple_repeat 1 24 0 1760 158 7 11 chrX 30968196 30968504 -146005636 + AluJo SINE Alu 1 307 0 443 369 45 29 chrX 30968608 30968917 -146005223 + L3 LINE CR1 64 377 -1200 1195 168 0 0 chrX 30969047 30969220 -146004920 - FAM SINE Alu -2 173 1 312 316 28 42 chrX 30969866 30970081 -146004059 + L2 LINE L2 2764 2975 -339 288 0 0 0 chrX 30970192 30970224 -146003916 + (CA)n Simple_repeat Simple_repeat 2 33 0 506 255 153 0 chrX 30970413 30970570 -146003570 - MER5A DNA MER1_type 0 189 9 642 251 29 29 chrX 30970658 30970865 -146003275 - MIR SINE MIR -49 213 7 354 241 9 71 chrX 30971525 30971637 -146002503 + L2 LINE L2 3197 3301 -12 435 317 96 29 chrX 30972349 30972557 -146001583 - MIR SINE MIR -14 248 27 351 268 140 30 chrX 30973095 30973259 -146000881 + MIR SINE MIR 63 244 -18 546 324 0 28 chrX 30977242 30977421 -145996719 + MIR3 SINE MIR 17 190 -18 849 242 88 48 chrX 30978094 30978552 -145995588 + L1MC4a LINE L1 5351 5813 -308 30 27 0 0 chrX 30978826 30978863 -145995277 + AT_rich Low_complexity Low_complexity 1 37 0 226 301 54 21 chrX 30980256 30980349 -145993791 - L2 LINE L2 -9 3304 3209 22 35 0 0 chrX 30980549 30980578 -145993562 + AT_rich Low_complexity Low_complexity 1 29 0 540 254 28 7 chrX 30981775 30981917 -145992223 + MIR3 SINE MIR 58 202 -6 1738 181 0 13 chrX 30982197 30982528 -145991612 + AluJb SINE Alu 1 327 0 232 45 0 68 chrX 30985871 30985915 -145988225 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 307 302 78 35 chrX 30988214 30988330 -145985810 + L2 LINE L2 3151 3271 -1 25 31 0 0 chrX 30988750 30988782 -145985358 + AT_rich Low_complexity Low_complexity 1 32 0 447 68 0 0 chrX 30990526 30990585 -145983555 + (GA)n Simple_repeat Simple_repeat 2 60 0 455 181 7 138 chrX 30993191 30993329 -145980811 + LTR67 LTR ERVL 431 550 -7 715 285 39 27 chrX 30993656 30993912 -145980228 - MIR SINE MIR -2 260 2 283 309 10 10 chrX 30994554 30994651 -145979489 - L2 LINE L2 -12 3301 3205 571 234 140 38 chrX 30994707 30994972 -145979168 - MLT1L LTR MaLR -50 565 274 921 295 182 33 chrX 30994973 30995556 -145978584 - L2 LINE L2 -620 2694 2025 429 248 20 10 chrX 30995671 30995772 -145978368 + MER5B DNA MER1_type 38 139 -39 7077 135 8 22 chrX 30995774 30997026 -145977114 + L1MC1 LINE L1 5097 6331 -2 186 43 0 0 chrX 30997026 30997049 -145977091 + (CA)n Simple_repeat Simple_repeat 2 24 0 2924 9 0 9 chrX 30997272 30997593 -145976547 - AluYb8 SINE Alu 0 318 1 199 324 44 0 chrX 30998185 30998253 -145975887 + L2 LINE L2 1953 2023 -1291 259 333 39 8 chrX 30998547 30998676 -145975464 + MIR SINE MIR 60 192 -70 5649 121 45 26 chrX 30999432 30999797 -145974343 + L1PA16 LINE L1 5111 5468 -698 2302 82 0 26 chrX 30999797 31000100 -145974040 + AluSp SINE Alu 1 295 -18 5649 121 45 26 chrX 31000100 31000764 -145973376 + L1PA16 LINE L1 5468 6157 -9 1456 156 33 16 chrX 31000799 31001043 -145973097 + AluJo SINE Alu 40 287 -25 1186 267 220 29 chrX 31002000 31002837 -145971303 - L2 LINE L2 -3 3310 2339 1077 272 96 20 chrX 31003483 31003888 -145970252 - L2 LINE L2 -725 2589 2154 22 0 0 0 chrX 31004248 31004270 -145969870 + AT_rich Low_complexity Low_complexity 1 22 0 5720 42 8 0 chrX 31004788 31005438 -145968702 + L1PA5 LINE L1 5495 6149 -5 21 36 0 0 chrX 31005444 31005472 -145968668 + AT_rich Low_complexity Low_complexity 1 28 0 403 280 156 46 chrX 31005609 31005955 -145968185 + MLT1J2 LTR MaLR 67 450 0 1091 234 174 24 chrX 31006092 31006425 -145967715 - MLT1G3 LTR MaLR -4 526 144 3115 177 42 31 chrX 31006846 31007340 -145966800 + MLT2B3 LTR ERVL 2 504 -50 213 39 0 0 chrX 31007340 31007366 -145966774 + (TC)n Simple_repeat Simple_repeat 2 27 0 3115 177 42 31 chrX 31007366 31007418 -145966722 + MLT2B3 LTR ERVL 504 554 0 594 272 42 33 chrX 31007553 31007766 -145966374 + LTR16A1 LTR ERVL 157 371 -86 894 169 114 45 chrX 31007767 31007968 -145966172 - AluJb SINE Alu -11 301 87 400 288 68 52 chrX 31008365 31008765 -145965375 + L1ME4a LINE L1 3595 4000 -2146 288 312 83 32 chrX 31009061 31009471 -145964669 + L1ME4a LINE L1 4397 4827 -1319 22 0 0 0 chrX 31009524 31009546 -145964594 + AT_rich Low_complexity Low_complexity 1 22 0 3115 177 42 31 chrX 31009655 31009707 -145964433 - MLT2B3 LTR ERVL 0 554 504 231 36 0 0 chrX 31009707 31009735 -145964405 + (GA)n Simple_repeat Simple_repeat 2 29 0 3115 177 42 31 chrX 31009735 31010229 -145963911 - MLT2B3 LTR ERVL -50 504 2 225 0 0 0 chrX 31010645 31010670 -145963470 + (TC)n Simple_repeat Simple_repeat 1 25 0 1050 215 188 27 chrX 31010680 31010978 -145963162 + MLT1G3 LTR MaLR 170 515 -15 * 1427 181 26 26 chrX 31010974 31011240 -145962900 - MSTD LTR MaLR -128 268 3 2463 78 0 3 chrX 31011270 31011578 -145962562 + AluY SINE Alu 1 307 -4 21 0 0 0 chrX 31011751 31011772 -145962368 + AT_rich Low_complexity Low_complexity 1 21 0 631 268 89 43 chrX 31011840 31012209 -145961931 + L1ME4a LINE L1 5391 5776 -345 6519 36 0 1 chrX 31012297 31013055 -145961085 - L1PA5 LINE L1 -6 6148 5392 449 223 165 33 chrX 31013086 31013359 -145960781 + L1ME4a LINE L1 5808 6116 -5 354 200 15 0 chrX 31013879 31013944 -145960196 - L2 LINE L2 0 3313 3248 2375 131 78 0 chrX 31014011 31014371 -145959769 + MLT1B LTR MaLR 3 390 0 2017 135 29 48 chrX 31014730 31015108 -145959032 - THE1C LTR MaLR 0 375 5 31 0 0 0 chrX 31015465 31015496 -145958644 + AT_rich Low_complexity Low_complexity 1 31 0 256 336 44 0 chrX 31016579 31016692 -145957448 + L2 LINE L2 1918 2035 -1279 2327 72 3 0 chrX 31017676 31017969 -145956171 - AluY SINE Alu -17 294 1 1045 123 0 0 chrX 31019047 31019201 -145954939 + L1MC1 LINE L1 6180 6333 0 1275 165 27 0 chrX 31019242 31019466 -145954674 + L1MB5 LINE L1 5945 6174 0 2085 161 129 19 chrX 31019644 31020072 -145954068 + MLT2B1 LTR ERVL 1 485 -35 315 0 0 0 chrX 31020072 31020107 -145954033 + (TG)n Simple_repeat Simple_repeat 2 36 0 2085 161 129 19 chrX 31020107 31020143 -145953997 + MLT2B1 LTR ERVL 485 516 -4 237 33 0 0 chrX 31021519 31021549 -145952591 + (CA)n Simple_repeat Simple_repeat 1 30 0 1064 212 135 50 chrX 31022210 31022611 -145951529 - MLT1D LTR MaLR -2 503 100 1392 194 83 17 chrX 31022611 31022971 -145951169 - MER45B DNA AcHobo 0 1040 657 371 167 15 0 chrX 31022970 31023036 -145951104 - MLT1D LTR MaLR -427 78 12 * 232 296 0 28 chrX 31023109 31023180 -145950960 - MLT1H1 LTR MaLR -299 256 188 231 214 36 48 chrX 31023279 31023363 -145950777 - MLT1H1 LTR MaLR -459 83 1 5535 160 19 35 chrX 31023468 31024619 -145949521 + L1MA7 LINE L1 4195 5363 -928 1907 159 91 3 chrX 31024619 31024983 -145949157 + MSTD LTR MaLR 1 396 0 5535 160 19 35 chrX 31024983 31025816 -145948324 + L1MA7 LINE L1 5363 6159 -132 424 70 12 58 chrX 31025816 31025890 -145948250 + L1PB2 LINE L1 6065 6146 -5 5535 160 19 35 chrX 31025890 31025902 -145948238 + L1MA7 LINE L1 6159 6170 -121 2255 102 0 16 chrX 31025907 31026222 -145947918 + AluSg SINE Alu 1 310 0 735 112 0 16 chrX 31026383 31026508 -145947632 + L1MA7 LINE L1 6165 6287 -4 6139 95 49 2 chrX 31026538 31027701 -145946439 - L1PA13 LINE L1 0 6163 4980 489 258 213 13 chrX 31027778 31028003 -145946137 - MLT1J LTR MaLR -241 270 1 1906 179 21 74 chrX 31028461 31028986 -145945154 - MLT1D LTR MaLR -8 497 1 696 144 0 0 chrX 31030977 31031102 -145943038 + L1P LINE L1 4728 4852 -1294 1686 147 68 49 chrX 31031124 31031492 -145942648 + THE1C LTR MaLR 1 375 0 344 343 66 15 chrX 31031678 31031815 -145942325 - L2 LINE L2 -610 2704 2561 503 291 124 12 chrX 31032184 31032442 -145941698 + LTR16A1 LTR ERVL 171 457 0 363 298 146 22 chrX 31032662 31032840 -145941300 + MIR SINE MIR 63 262 0 2529 50 3 3 chrX 31032859 31033159 -145940981 + AluY SINE Alu 1 300 -11 5310 188 27 4 chrX 31035500 31036513 -145937627 - MER45B DNA AcHobo -4 1036 1 3234 105 58 12 chrX 31037001 31037517 -145936623 - L1MB2 LINE L1 -3 6168 5629 504 319 12 24 chrX 31038042 31038208 -145935932 - MIR3 SINE MIR 0 208 45 651 290 40 10 chrX 31039778 31039978 -145934162 - MIR SINE MIR -40 222 17 562 264 162 8 chrX 31041357 31041554 -145932586 + MIR SINE MIR 37 262 0 33 25 0 0 chrX 31042322 31042362 -145931778 + AT_rich Low_complexity Low_complexity 1 40 0 416 316 50 62 chrX 31042521 31042879 -145931261 + MLT1K LTR MaLR 25 378 -210 384 326 57 21 chrX 31043386 31043579 -145930561 + MIR SINE MIR 51 250 -12 273 57 0 0 chrX 31043583 31043618 -145930522 + (CAT)n Simple_repeat Simple_repeat 1 35 0 2225 60 0 0 chrX 31043800 31044067 -145930073 - AluY SINE Alu -1 310 44 2098 175 37 3 chrX 31044166 31044543 -145929597 + MLT1B LTR MaLR 1 390 0 2320 85 0 25 chrX 31045872 31046190 -145927950 - AluSg SINE Alu 0 310 1 217 225 0 0 chrX 31046298 31046338 -145927802 + (CAG)n Simple_repeat Simple_repeat 3 42 0 285 29 0 0 chrX 31048857 31048891 -145925249 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1015 137 69 0 chrX 31049129 31049304 -145924836 + MER5A DNA MER1_type 3 189 0 200 370 0 19 chrX 31050462 31050516 -145923624 + L2 LINE L2 3129 3181 -91 965 216 127 94 chrX 31050885 31051459 -145922681 - MLT1G1 LTR MaLR 0 595 3 207 0 0 0 chrX 31052181 31052204 -145921936 + (A)n Simple_repeat Simple_repeat 1 23 0 1693 189 14 30 chrX 31053937 31054307 -145919833 + MLT1A1 LTR MaLR 2 365 0 333 0 0 0 chrX 31055240 31055277 -145918863 + (CA)n Simple_repeat Simple_repeat 2 38 0 735 299 93 29 chrX 31056610 31057095 -145917045 + LTR33 LTR ERVL 6 521 0 223 343 91 21 chrX 31058192 31058335 -145915805 + MIR3 SINE MIR 31 183 -25 296 227 11 45 chrX 31058423 31058511 -145915629 - MLT1H LTR MaLR -32 517 433 624 272 28 70 chrX 31058524 31058811 -145915329 - MLT1H LTR MaLR -223 326 52 1720 244 53 41 chrX 31060655 31061168 -145912972 - MLT1E LTR MaLR 0 593 75 515 291 153 15 chrX 31061269 31061602 -145912538 - MARNA DNA Mariner -44 542 164 3325 72 5 0 chrX 31062348 31062793 -145911347 + MER41A LTR ERV1 1 447 -107 6061 130 4 5 chrX 31062805 31064229 -145909911 - L1PB1 LINE L1 -3 6148 4726 670 75 0 0 chrX 31064229 31064322 -145909818 + MER41B LTR ERV1 543 635 0 259 207 139 48 chrX 31064913 31065017 -145909123 + MLT1H LTR MaLR 436 590 0 1060 243 127 26 chrX 31065393 31065850 -145908290 + LTR33 LTR ERVL 3 505 -16 1716 153 21 28 chrX 31066032 31066314 -145907826 + AluJb SINE Alu 1 280 -32 450 154 0 0 chrX 31067216 31067294 -145906846 + GA-rich Low_complexity Low_complexity 3 80 0 2050 100 0 4 chrX 31067488 31067768 -145906372 - AluY SINE Alu -6 305 27 22 0 0 0 chrX 31067844 31067866 -145906274 + AT_rich Low_complexity Low_complexity 1 22 0 15381 81 21 14 chrX 31068145 31070872 -145903268 - L1PA7 LINE L1 -233 5921 3173 1839 64 0 0 chrX 31070872 31071089 -145903051 + L1PA7 LINE L1 5931 6150 -4 1111 158 23 56 chrX 31071135 31071350 -145902790 + AluJo SINE Alu 85 292 -20 884 218 32 11 chrX 31072652 31072840 -145901300 + MER63A DNA MER1_type 1 192 -18 591 324 107 28 chrX 31072940 31073258 -145900882 + L2 LINE L2 2925 3267 -5 476 373 22 4 chrX 31073453 31073681 -145900459 + MIR SINE MIR 29 260 -2 202 299 10 31 chrX 31073981 31074078 -145900062 + CT-rich Low_complexity Low_complexity 3 97 0 745 299 37 0 chrX 31075327 31075514 -145898626 + MER91A DNA MER1_type 2 195 -1 2768 99 23 3 chrX 31075557 31075941 -145898199 + L1PA11 LINE L1 5783 6174 0 22 0 0 0 chrX 31077047 31077069 -145897071 + AT_rich Low_complexity Low_complexity 1 22 0 3533 175 12 3 chrX 31077070 31077671 -145896469 - L1MB2 LINE L1 -9 6162 5557 1994 113 11 11 chrX 31077698 31077982 -145896158 - AluSx SINE Alu -28 284 1 255 291 92 7 chrX 31078094 31078235 -145895905 - L1MC5 LINE L1 -37 7924 7772 26 0 0 0 chrX 31078284 31078310 -145895830 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chrX 31082395 31082451 -145891689 + AT_rich Low_complexity Low_complexity 1 56 0 5449 50 2 2 chrX 31082503 31083126 -145891014 - L1PA6 LINE L1 -5 6149 5527 235 250 95 69 chrX 31083464 31083580 -145890560 + L2 LINE L2 3194 3312 -1 323 222 0 93 chrX 31083617 31083725 -145890415 + MIR SINE MIR 139 236 -26 544 314 49 12 chrX 31083920 31084125 -145890015 + MIR SINE MIR 5 222 -40 2477 174 40 26 chrX 31084125 31084366 -145889774 - MSTB LTR MaLR 0 426 174 2377 74 0 0 chrX 31084366 31084691 -145889449 + AluY SINE Alu 1 325 0 2477 174 40 26 chrX 31084691 31084868 -145889272 - MSTB LTR MaLR -252 174 1 544 314 49 12 chrX 31084868 31084907 -145889233 + MIR SINE MIR 222 258 -4 253 304 64 16 chrX 31085296 31085421 -145888719 - MLT1H LTR MaLR -396 153 23 441 257 54 124 chrX 31085426 31085667 -145888473 + L2 LINE L2 3037 3260 -12 623 165 0 0 chrX 31087058 31087159 -145886981 - MER5A DNA MER1_type -84 105 5 2564 131 116 0 chrX 31087542 31087946 -145886194 - LTR47A LTR ERVL -1 451 1 26 0 0 0 chrX 31088245 31088271 -145885869 + AT_rich Low_complexity Low_complexity 1 26 0 221 129 0 81 chrX 31089169 31089231 -145884909 + (TGGGGG)n Simple_repeat Simple_repeat 4 60 0 284 336 44 0 chrX 31089725 31089838 -145884302 - L2 LINE L2 -1 3271 3154 830 193 122 54 chrX 31090741 31090763 -145883377 + Charlie7 DNA MER1_type 1597 1616 -996 1072 99 17 0 chrX 31090763 31090935 -145883205 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 2258 53 0 18 chrX 31090937 31091219 -145882921 - AluSc SINE Alu -32 277 1 830 193 122 54 chrX 31091219 31091488 -145882652 + Charlie7 DNA MER1_type 1616 1911 -701 3053 103 14 21 chrX 31091488 31091923 -145882217 + L1PA16 LINE L1 5735 6166 0 1161 220 129 46 chrX 31092809 31092994 -145881146 + Charlie7 DNA MER1_type 1898 2066 -546 2283 152 103 77 chrX 31092994 31093501 -145880639 + MLT2B1 LTR ERVL 1 520 0 1161 220 129 46 chrX 31093501 31093811 -145880329 + Charlie7 DNA MER1_type 2066 2434 -178 6915 182 13 11 chrX 31093820 31096302 -145877838 + L1MC1 LINE L1 3831 6316 -17 355 201 121 27 chrX 31096452 31096584 -145877556 + Charlie7 DNA MER1_type 2384 2533 -79 363 44 0 0 chrX 31096584 31096629 -145877511 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 201 121 27 chrX 31096629 31096645 -145877495 + Charlie7 DNA MER1_type 2533 2546 -66 2243 94 0 0 chrX 31096650 31096936 -145877204 - AluSx SINE Alu -26 286 1 570 345 48 33 chrX 31097011 31097344 -145876796 - LTR16C LTR ERVL -9 482 145 2639 27 0 0 chrX 31097639 31097935 -145876205 - AluY SINE Alu -15 296 1 2173 92 17 3 chrX 31097935 31098229 -145875911 - L1PA15 LINE L1 0 6165 5868 421 265 73 64 chrX 31098246 31098470 -145875670 + MIR SINE MIR 29 249 -13 2543 200 80 29 chrX 31098806 31099535 -145874605 - L1MC5 LINE L1 -36 7925 7160 1706 166 8 0 chrX 31100303 31100562 -145873578 + Tigger7 DNA MER2_type 4 264 -2223 628 152 0 10 chrX 31100568 31100667 -145873473 + Tigger7 DNA MER2_type 2394 2491 0 723 211 103 16 chrX 31101003 31101197 -145872943 - MIR SINE MIR -44 218 8 196 270 48 0 chrX 31102045 31102108 -145872032 - L3b LINE CR1 -166 1417 1352 1579 182 44 32 chrX 31102678 31102710 -145871430 - MLT2B1 LTR ERVL -6 514 484 602 88 0 11 chrX 31102710 31102801 -145871339 + (TG)n Simple_repeat Simple_repeat 2 91 0 1579 182 44 32 chrX 31102801 31103230 -145870910 - MLT2B1 LTR ERVL -36 484 1 1362 226 26 26 chrX 31103676 31104016 -145870124 + L1ME2 LINE L1 5824 6163 -1 255 322 0 11 chrX 31104029 31104119 -145870021 + MIR SINE MIR 169 257 -5 5279 43 0 2 chrX 31104701 31105301 -145868839 - L1PA5 LINE L1 -2 6152 5554 497 219 0 31 chrX 31105414 31105510 -145868630 - MER5A DNA MER1_type -83 106 14 225 154 0 0 chrX 31105640 31105679 -145868461 + (CA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chrX 31106187 31106212 -145867928 + (GGA)n Simple_repeat Simple_repeat 1 25 0 394 306 43 48 chrX 31106397 31106583 -145867557 + MIR SINE MIR 7 191 -71 1492 147 0 14 chrX 31107505 31107723 -145866417 - AluJb SINE Alu -17 295 81 1183 221 32 98 chrX 31107724 31108195 -145865945 - HAL1 LINE L1 -1330 1177 738 536 178 11 0 chrX 31108461 31108551 -145865589 - MER5A DNA MER1_type -2 187 97 186 71 0 0 chrX 31108751 31108779 -145865361 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 1960 101 0 89 chrX 31108779 31109095 -145865045 - AluSq SINE Alu -25 288 1 1025 158 44 6 chrX 31109161 31109344 -145864796 - L1PA16 LINE L1 -14 6152 5963 915 239 41 21 chrX 31109388 31109729 -145864411 + MLT1G LTR MaLR 45 437 -93 281 343 19 9 chrX 31109835 31109943 -145864197 + L2 LINE L2 3180 3288 -25 840 276 46 13 chrX 31110068 31110307 -145863833 + MIR SINE MIR 13 259 -3 344 229 138 28 chrX 31110584 31110693 -145863447 + MER5A DNA MER1_type 35 155 -34 211 195 24 0 chrX 31111332 31111373 -145862767 + CT-rich Low_complexity Low_complexity 4 45 0 191 36 36 0 chrX 31111373 31111401 -145862739 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 246 289 26 0 chrX 31111402 31111478 -145862662 - L2 LINE L2 -2 3270 3193 1174 115 0 0 chrX 31111834 31111990 -145862150 - AluSg/x SINE Alu -10 300 145 1039 173 20 25 chrX 31112273 31112470 -145861670 - MER20 DNA MER1_type -1 218 23 379 267 7 52 chrX 31112494 31112629 -145861511 - MER5B DNA MER1_type -14 164 36 2170 246 35 9 chrX 31113227 31113771 -145860369 + L1ME3A LINE L1 5610 6167 -3 27 0 0 0 chrX 31114893 31114920 -145859220 + AT_rich Low_complexity Low_complexity 1 27 0 181 352 84 0 chrX 31114920 31114991 -145859149 - L2 LINE L2 -50 3222 3146 234 158 0 0 chrX 31114995 31115033 -145859107 - MLT1G1 LTR MaLR -7 583 546 1721 183 45 66 chrX 31115064 31115442 -145858698 - MLT1A2 LTR MaLR -1 373 4 2337 128 12 52 chrX 31115455 31115860 -145858280 - MLT1B LTR MaLR -1 389 1 601 194 19 0 chrX 31115861 31115964 -145858176 + MER81 DNA DNA 10 114 0 978 276 60 82 chrX 31115971 31116492 -145857648 - MLT1G1 LTR MaLR -66 529 21 2506 126 34 3 chrX 31116499 31116880 -145857260 - L1MB2 LINE L1 -3 6168 5776 199 250 47 31 chrX 31117064 31117128 -145857012 - L2 LINE L2 -346 2967 2903 278 348 71 0 chrX 31117136 31117248 -145856892 - MER91C DNA MER1_type -20 120 1 613 285 128 25 chrX 31117625 31118075 -145856065 - L2 LINE L2 -104 3209 2720 243 203 51 0 chrX 31118512 31118571 -145855569 + LTR16C LTR ERVL 328 389 -102 890 313 50 18 chrX 31118666 31119005 -145855135 - L2 LINE L2 -591 2723 2374 186 234 0 21 chrX 31119008 31119055 -145855085 - L2 LINE L2 0 3313 3268 370 248 9 28 chrX 31119064 31119173 -145854967 + MER34 LTR ERV1 25 131 -411 402 261 86 46 chrX 31119333 31119418 -145854722 + MER34 LTR ERV1 353 433 -109 2343 82 10 0 chrX 31119418 31119711 -145854429 + AluSc SINE Alu 1 296 -13 402 261 86 46 chrX 31119711 31119892 -145854248 + MER34 LTR ERV1 433 542 0 180 324 155 28 chrX 31120042 31120184 -145853956 - L2 LINE L2 -215 3057 2898 226 325 55 59 chrX 31120325 31120596 -145853544 + L2 LINE L2 2896 3165 -107 209 108 40 122 chrX 31121366 31121440 -145852700 + A-rich Low_complexity Low_complexity 3 70 0 300 231 0 0 chrX 31121502 31121580 -145852560 + (TA)n Simple_repeat Simple_repeat 1 78 0 384 299 133 29 chrX 31122437 31122678 -145851462 + L3b LINE CR1 1165 1430 -153 250 243 252 0 chrX 31122847 31122954 -145851186 + MIR SINE MIR 17 150 -112 * 421 243 53 120 chrX 31122949 31123290 -145850850 - L2 LINE L2 -13 3300 2983 1594 187 59 41 chrX 31123291 31123750 -145850390 + MLT1C LTR MaLR 1 467 0 444 235 34 17 chrX 31123756 31123875 -145850265 - L2 LINE L2 -333 2980 2860 277 320 0 0 chrX 31123877 31123955 -145850185 - LTR16A LTR ERVL -313 137 60 1843 148 120 18 chrX 31123988 31124372 -145849768 + MSTA LTR MaLR 6 428 0 1189 279 91 8 chrX 31124407 31124790 -145849350 - L2 LINE L2 -668 2646 2232 2989 210 61 15 chrX 31124844 31125054 -145849086 - L1MC4 LINE L1 -743 5403 5204 2765 90 0 6 chrX 31125054 31125420 -145848720 - THE1B LTR MaLR 0 364 1 2989 210 61 15 chrX 31125420 31126354 -145847786 - L1MC4 LINE L1 -942 5204 4932 1901 136 43 54 chrX 31126354 31126723 -145847417 - MLT1A1 LTR MaLR 0 365 1 2989 210 61 15 chrX 31126723 31126755 -145847385 - L1MC4 LINE L1 -1214 4932 4903 1361 232 42 32 chrX 31126774 31127333 -145846807 - L1ME LINE L1 -4676 1785 945 317 277 42 35 chrX 31127414 31127624 -145846516 - L1ME LINE L1 -5585 945 730 276 367 25 10 chrX 31128048 31128244 -145845896 - L1ME LINE L1 -6308 232 34 867 224 142 12 chrX 31128348 31128594 -145845546 - L2 LINE L2 -1118 2196 1919 738 269 46 34 chrX 31128875 31129086 -145845054 + MIR SINE MIR 4 214 -42 282 299 16 118 chrX 31129591 31129778 -145844362 + MIR3 SINE MIR 17 184 -24 281 319 8 42 chrX 31129785 31129904 -145844236 - L2 LINE L2 -3 3269 3155 24 0 0 0 chrX 31130059 31130083 -145844057 + AT_rich Low_complexity Low_complexity 1 24 0 286 263 140 9 chrX 31131998 31132112 -145842028 + MIR3 SINE MIR 48 176 -32 955 182 16 5 chrX 31134074 31134261 -145839879 - MER5A DNA MER1_type 0 189 1 1411 259 71 17 chrX 31134442 31134905 -145839235 - LTR16C LTR ERVL -3 488 1 834 158 0 8 chrX 31136868 31136995 -145837145 + FLAM_A SINE Alu 2 127 -6 21 0 0 0 chrX 31136995 31137016 -145837124 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 31137048 31137070 -145837070 + AT_rich Low_complexity Low_complexity 1 22 0 973 167 15 61 chrX 31137634 31137832 -145836308 + MER5A DNA MER1_type 1 189 0 196 259 0 37 chrX 31138125 31138179 -145835961 + L2 LINE L2 3209 3260 -12 1609 180 0 30 chrX 31138241 31138566 -145835574 + AluJo SINE Alu 1 316 0 521 265 144 0 chrX 31138649 31138806 -145835334 - MER5A DNA MER1_type -3 186 4 241 244 343 50 chrX 31138814 31139015 -145835125 + L3 LINE CR1 1140 1399 -178 707 271 67 56 chrX 31139245 31139796 -145834344 - L1ME4a LINE L1 -70 6051 5497 2032 136 0 13 chrX 31140179 31140489 -145833651 - AluJb SINE Alu -6 306 1 815 205 19 0 chrX 31140630 31140791 -145833349 - FRAM SINE Alu -12 164 1 394 104 56 132 chrX 31140810 31140885 -145833255 - Charlie7 DNA MER1_type -191 2421 2361 1364 31 0 0 chrX 31140885 31141046 -145833094 - L1PA3 LINE L1 0 6155 5995 394 104 56 132 chrX 31141046 31141114 -145833026 - Charlie7 DNA MER1_type -251 2361 2289 1014 247 112 50 chrX 31141173 31141772 -145832368 - L1MC4 LINE L1 -1 8041 7406 2456 93 0 0 chrX 31141794 31142107 -145832033 + AluSp SINE Alu 1 313 0 3271 206 69 10 chrX 31142114 31143087 -145831053 - L1ME1 LINE L1 -4 6231 5195 363 173 316 0 chrX 31143092 31143225 -145830915 - L1ME1 LINE L1 -5269 1127 953 242 317 126 6 chrX 31143597 31143947 -145830193 - L1 LINE L1 -2034 4181 3790 524 273 62 8 chrX 31144043 31144171 -145829969 + MIR SINE MIR 7 141 -121 21 57 0 0 chrX 31144267 31144302 -145829838 + AT_rich Low_complexity Low_complexity 1 35 0 2303 85 3 19 chrX 31144345 31144661 -145829479 - AluSq SINE Alu -2 311 1 1932 207 131 9 chrX 31144863 31145413 -145828727 - L1ME1 LINE L1 -197 5969 5353 1232 224 88 5 chrX 31145409 31145784 -145828356 - L1ME1 LINE L1 -2017 4129 3724 * 557 169 45 11 chrX 31146117 31146274 -145827866 + L1MC4 LINE L1 7892 7995 0 2405 109 0 0 chrX 31146299 31146610 -145827530 + AluSx SINE Alu 1 311 -1 911 204 0 0 chrX 31146611 31146812 -145827328 - L1ME1 LINE L1 -2415 3731 3531 503 172 35 0 chrX 31146818 31146934 -145827206 - L1M4 LINE L1 -1471 4675 4556 2651 162 52 16 chrX 31147000 31147544 -145826596 - L1MD1 LINE L1 0 6311 5749 2383 205 94 9 chrX 31147545 31148600 -145825540 - L1MD1 LINE L1 -598 5713 4593 2113 171 51 2 chrX 31148615 31149029 -145825111 - L1MB5 LINE L1 -9 6165 5732 3885 258 59 31 chrX 31149066 31149162 -145824978 - L1MD1 LINE L1 -4754 1642 1550 2611 27 10 0 chrX 31149162 31149455 -145824685 - AluY SINE Alu -13 298 3 3885 258 59 31 chrX 31149455 31150922 -145823218 - L1MD1 LINE L1 -4846 1550 35 376 345 52 40 chrX 31151338 31151666 -145822474 + LTR16C LTR ERVL 150 481 -10 278 270 0 32 chrX 31151831 31151894 -145822246 - L2 LINE L2 -10 3262 3202 639 170 30 44 chrX 31152035 31152170 -145821970 - FLAM_C SINE Alu 0 133 1 428 245 108 22 chrX 31152184 31152323 -145821817 - MLT1E1 LTR MaLR -503 151 1 4330 249 59 15 chrX 31152323 31152929 -145821211 + L1ME LINE L1 534 1112 -5284 414 0 0 0 chrX 31152929 31152975 -145821165 + (CA)n Simple_repeat Simple_repeat 1 46 0 4330 249 59 15 chrX 31152975 31153092 -145821048 + L1ME LINE L1 1112 1222 -5174 2449 88 3 0 chrX 31153092 31153398 -145820742 + AluSq SINE Alu 1 307 -6 4330 249 59 15 chrX 31153398 31154168 -145819972 + L1ME LINE L1 1222 2094 -4302 242 216 0 0 chrX 31154180 31154231 -145819909 + MER34 LTR ERV1 25 75 -467 1272 225 3 39 chrX 31154318 31154652 -145819488 + L1ME LINE L1 3595 3916 -2299 4373 162 31 5 chrX 31154661 31155502 -145818638 + L1MB5 LINE L1 5312 6174 0 * 4640 204 37 41 chrX 31155501 31156879 -145817261 + L1ME LINE L1 3901 5272 -943 2116 22 15 0 chrX 31156878 31157150 -145816990 - L1PA4 LINE L1 -790 5356 5081 * 7163 19 0 0 chrX 31157150 31157976 -145816164 + L1PA4 LINE L1 5326 6153 -2 376 153 0 24 chrX 31157979 31158064 -145816076 + L1MDb LINE L1 1314 1396 -5013 279 226 5 21 chrX 31158069 31158203 -145815937 + L1ME LINE L1 5257 5392 -843 1763 170 39 12 chrX 31158203 31158538 -145815602 + MER2 DNA MER2_type 1 344 0 279 226 5 21 chrX 31158538 31158592 -145815548 + L1ME LINE L1 5392 5562 -673 2133 159 87 7 chrX 31158592 31159167 -145814973 - MER39 LTR ERV1 0 707 13 2372 134 14 21 chrX 31159167 31159481 -145814659 - MER41B LTR ERV1 0 635 323 1961 128 67 28 chrX 31159481 31159840 -145814300 - THE1C LTR MaLR -2 373 1 2372 134 14 21 chrX 31159840 31159943 -145814197 - MER41B LTR ERV1 -312 323 221 2321 59 0 0 chrX 31159943 31160232 -145813908 - L1PA5 LINE L1 -2 6152 5864 1509 113 4 0 chrX 31160251 31160482 -145813658 - MER41B LTR ERV1 -403 232 1 465 130 122 26 chrX 31160575 31160690 -145813450 + L1MA10 LINE L1 6207 6332 -2 1048 312 133 20 chrX 31160724 31161377 -145812763 + L2 LINE L2 2157 2883 -431 294 95 0 0 chrX 31165283 31165325 -145808815 + (TG)n Simple_repeat Simple_repeat 2 43 0 1858 157 10 16 chrX 31166573 31166878 -145807262 - AluSx SINE Alu -1 311 9 222 258 15 15 chrX 31167020 31167086 -145807054 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 451 339 108 34 chrX 31167243 31167849 -145806291 - L2 LINE L2 -156 3116 2465 2473 146 29 54 chrX 31167849 31168328 -145805812 + MLT1C LTR MaLR 1 467 0 451 339 108 34 chrX 31168328 31168363 -145805777 - L2 LINE L2 -807 2465 2434 2268 174 67 14 chrX 31168380 31168816 -145805324 - MLT1C LTR MaLR -2 465 7 245 365 45 36 chrX 31168863 31169085 -145805055 - L2 LINE L2 -922 2392 2169 827 280 4 25 chrX 31169208 31169451 -145804689 - MIR SINE MIR -3 259 22 279 0 0 0 chrX 31169794 31169825 -145804315 + (CA)n Simple_repeat Simple_repeat 2 32 0 1345 264 59 70 chrX 31171175 31171488 -145802652 + LTR16C LTR ERVL 1 316 -175 1642 174 3 11 chrX 31171488 31171770 -145802370 + AluJo SINE Alu 1 280 -32 234 0 0 0 chrX 31171771 31171797 -145802343 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 1345 264 59 70 chrX 31171797 31171969 -145802171 + LTR16C LTR ERVL 315 483 -8 266 253 89 13 chrX 31173467 31173546 -145800594 + MIR SINE MIR 106 190 -72 1227 245 103 56 chrX 31174433 31174919 -145799221 + LTR33 LTR ERVL 1 509 -12 1016 248 38 0 chrX 31176099 31176337 -145797803 + LTR16A LTR ERVL 204 450 0 624 274 76 5 chrX 31176949 31177157 -145796983 - MIR SINE MIR 0 262 41 307 231 31 0 chrX 31177316 31177381 -145796759 - MER112 DNA MER1_type -21 239 173 409 211 62 43 chrX 31177423 31177584 -145796556 - MER112 DNA MER1_type -83 177 14 2180 116 0 7 chrX 31177708 31178002 -145796138 + AluSg SINE Alu 1 292 -18 21 0 0 0 chrX 31178005 31178026 -145796114 + AT_rich Low_complexity Low_complexity 1 21 0 1154 254 126 24 chrX 31178286 31178738 -145795402 - LTR33 LTR ERVL 0 521 24 433 275 99 0 chrX 31179048 31179179 -145794961 + MIR SINE MIR 118 261 -1 2182 117 0 0 chrX 31179209 31179491 -145794649 + AluSx SINE Alu 1 282 -30 184 301 130 88 chrX 31179623 31180008 -145794132 + L2 LINE L2 2829 3229 -43 370 209 6 69 chrX 31180062 31180174 -145793966 - MIR SINE MIR -93 115 5 23 33 0 0 chrX 31180893 31180923 -145793217 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 31181099 31181124 -145793016 + AT_rich Low_complexity Low_complexity 1 25 0 464 260 49 16 chrX 31181233 31181356 -145792784 + L2 LINE L2 3176 3302 -11 384 264 176 7 chrX 31181580 31181853 -145792287 + L1ME4a LINE L1 5800 6118 -3 1824 233 119 41 chrX 31182691 31182799 -145791341 - L2 LINE L2 -465 2849 2751 2099 153 19 41 chrX 31182799 31183166 -145790974 + MLT1A1 LTR MaLR 5 363 -2 1824 233 119 41 chrX 31183166 31183689 -145790451 - L2 LINE L2 -563 2751 2169 1447 274 42 35 chrX 31183848 31184329 -145789811 + L2 LINE L2 2482 2965 -349 693 270 75 98 chrX 31184965 31185321 -145788819 + HAL1 LINE L1 39 382 -2125 2649 46 0 0 chrX 31185321 31185623 -145788517 + AluY SINE Alu 3 304 -7 693 270 75 98 chrX 31185623 31185758 -145788382 + HAL1 LINE L1 382 519 -1988 887 253 129 46 chrX 31185851 31186332 -145787808 + HAL1 LINE L1 626 1066 -1441 1914 144 16 16 chrX 31186332 31186644 -145787496 - AluJo SINE Alu 0 312 1 887 253 129 46 chrX 31186644 31186785 -145787355 + HAL1 LINE L1 1066 1194 -1313 282 56 0 0 chrX 31186785 31186821 -145787319 + (CA)n Simple_repeat Simple_repeat 2 37 0 887 253 129 46 chrX 31186821 31186903 -145787237 + HAL1 LINE L1 1194 1465 -1042 469 279 64 75 chrX 31186921 31187186 -145786954 + HAL1 LINE L1 2246 2507 0 800 279 88 30 chrX 31187700 31188062 -145786078 + MARNA DNA Mariner 191 573 -13 187 188 14 14 chrX 31188894 31188963 -145785177 + GA-rich Low_complexity Low_complexity 2 70 0 220 292 18 71 chrX 31189475 31189588 -145784552 - MIR SINE MIR -136 126 20 629 259 38 0 chrX 31191201 31191359 -145782781 - MIR SINE MIR -29 233 70 204 163 0 41 chrX 31191906 31191955 -145782185 + A-rich Low_complexity Low_complexity 3 49 0 276 354 54 40 chrX 31192215 31192438 -145781702 - L2 LINE L2 -536 2778 2553 549 353 4 13 chrX 31192506 31192741 -145781399 + MIR SINE MIR 1 233 -29 1406 98 0 44 chrX 31194987 31195190 -145778950 + AluSg/x SINE Alu 80 273 -39 360 0 0 0 chrX 31195198 31195238 -145778902 + (CA)n Simple_repeat Simple_repeat 1 40 0 722 214 195 14 chrX 31196968 31197183 -145776957 - MIR SINE MIR -3 259 6 1976 134 14 0 chrX 31197528 31197841 -145776299 + AluSx SINE Alu 1 312 0 1287 150 11 115 chrX 31197890 31198176 -145775964 + AluJo SINE Alu 40 295 -17 265 267 95 9 chrX 31198228 31198344 -145775796 + L1ME4a LINE L1 5901 6026 -95 2646 173 57 49 chrX 31199002 31199597 -145774543 - L1MB5 LINE L1 -8 6166 5567 301 370 8 24 chrX 31200952 31201079 -145773061 + MIR SINE MIR 20 144 -118 1241 242 57 84 chrX 31201103 31201509 -145772631 + L2 LINE L2 2667 3043 -270 2463 92 0 0 chrX 31201509 31201813 -145772327 + AluSq SINE Alu 1 304 -9 1241 242 57 84 chrX 31201813 31202076 -145772064 + L2 LINE L2 3043 3312 -1 209 293 37 0 chrX 31202079 31202161 -145771979 + MIR SINE MIR 178 262 0 1876 139 24 11 chrX 31202611 31202898 -145771242 - AluJo SINE Alu -19 293 3 1566 217 0 3 chrX 31203906 31204201 -145769939 + AluJo SINE Alu 3 296 -16 487 242 13 20 chrX 31204233 31204386 -145769754 - L1ME4a LINE L1 -11 6110 5959 437 315 24 18 chrX 31204490 31204655 -145769485 - L1ME4a LINE L1 -353 5768 5603 1348 159 0 13 chrX 31204655 31204881 -145769259 + AluJo SINE Alu 83 305 -7 1632 147 13 45 chrX 31205039 31205351 -145768789 - AluJo SINE Alu -10 302 1 2245 110 0 16 chrX 31205904 31206212 -145767928 + AluSx SINE Alu 1 303 -9 663 243 52 43 chrX 31206260 31206470 -145767670 - MIR SINE MIR 0 262 51 219 316 29 52 chrX 31206516 31206652 -145767488 - L2 LINE L2 -465 2849 2717 5141 156 58 1 chrX 31207712 31208300 -145765840 + MER6 DNA MER2_type 2 650 -215 2368 92 0 10 chrX 31208300 31208605 -145765535 - AluSq SINE Alu -11 302 1 5141 156 58 1 chrX 31208605 31208832 -145765308 + MER6 DNA MER2_type 650 863 -2 306 0 0 0 chrX 31209130 31209164 -145764976 + (TG)n Simple_repeat Simple_repeat 2 35 0 3740 107 42 29 chrX 31209947 31210544 -145763596 + MER4B LTR ERV1 6 610 0 214 139 56 0 chrX 31211052 31211088 -145763052 - MER91B DNA MER1_type -135 55 18 871 256 47 54 chrX 31212130 31212447 -145761693 + MLT1H LTR MaLR 40 354 -195 1844 175 0 6 chrX 31212971 31213285 -145760855 - AluJb SINE Alu 0 312 1 291 303 119 9 chrX 31213850 31213959 -145760181 - MIR SINE MIR -48 214 94 1059 215 22 18 chrX 31214003 31214226 -145759914 + MIR SINE MIR 38 261 -1 303 93 0 0 chrX 31214354 31214397 -145759743 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 232 385 0 0 chrX 31214675 31214758 -145759382 + L2 LINE L2 3189 3271 -1 21 71 0 0 chrX 31215205 31215247 -145758893 + AT_rich Low_complexity Low_complexity 1 42 0 285 326 51 60 chrX 31215803 31216018 -145758122 + L1MEd LINE L1 495 707 -5665 2611 155 29 7 chrX 31216107 31216520 -145757620 + MSTB LTR MaLR 1 422 -4 3090 208 78 4 chrX 31216616 31217285 -145756855 + L1MC4a LINE L1 6199 7274 0 361 255 91 83 chrX 31217342 31217745 -145756395 + L1MEd LINE L1 947 1439 -1304 327 278 121 5 chrX 31217745 31218066 -145756074 + L1MEd LINE L1 1263 1874 -869 534 274 123 34 chrX 31218095 31218566 -145755574 + L1MEd LINE L1 2974 3486 -2896 435 295 100 29 chrX 31218612 31218971 -145755169 + L1MEd LINE L1 3605 3983 -2399 402 234 177 42 chrX 31218974 31219254 -145754886 + L1MEd LINE L1 4240 4587 -1795 1755 110 12 0 chrX 31219254 31219508 -145754632 + AluSg1 SINE Alu 53 309 0 402 234 177 42 chrX 31219508 31219611 -145754529 + L1MEd LINE L1 4587 4675 -1707 1685 203 3 14 chrX 31220662 31220958 -145753182 - AluJo SINE Alu -19 293 1 5499 215 34 26 chrX 31221089 31223324 -145750816 + L1PA16 LINE L1 773 3082 -3121 5465 169 41 19 chrX 31223334 31224298 -145749842 + L1PA16 LINE L1 4103 5045 -1178 2153 130 3 0 chrX 31224298 31224598 -145749542 + AluSx SINE Alu 1 301 -11 5465 169 41 19 chrX 31224598 31224861 -145749279 + L1PA16 LINE L1 5045 5301 -922 234 0 0 0 chrX 31224861 31224887 -145749253 + (CAA)n Simple_repeat Simple_repeat 1 26 0 5465 169 41 19 chrX 31224887 31225710 -145748430 + L1PA16 LINE L1 5301 6203 -20 376 300 90 37 chrX 31225728 31226088 -145748052 + L1MEd LINE L1 4798 5215 -1167 603 0 0 0 chrX 31226088 31226155 -145747985 + (TG)n Simple_repeat Simple_repeat 2 68 0 376 300 90 37 chrX 31226155 31226375 -145747765 + L1MEd LINE L1 5215 5422 -960 * 4228 217 51 16 chrX 31226368 31226718 -145747422 + L1ME1 LINE L1 4115 4451 -1715 3329 115 36 31 chrX 31226718 31227241 -145746899 + MER1A DNA MER1_type 2 527 0 4228 217 51 16 chrX 31227241 31228315 -145745825 + L1ME1 LINE L1 4451 5582 -584 2273 112 3 0 chrX 31228315 31228610 -145745530 + AluSx SINE Alu 1 296 -16 2236 73 16 35 chrX 31228648 31228961 -145745179 + AluY SINE Alu 1 307 -4 2975 144 50 179 chrX 31228961 31229194 -145744946 + L1MCa LINE L1 100 362 -6064 665 189 0 0 chrX 31229194 31229305 -145744835 + FLAM_A SINE Alu 24 134 -8 2975 144 50 179 chrX 31229305 31229769 -145744371 + L1MCa LINE L1 362 728 -5698 2173 118 0 16 chrX 31229769 31230083 -145744057 - AluSx SINE Alu -3 309 1 2975 144 50 179 chrX 31230083 31230379 -145743761 + L1MCa LINE L1 728 1061 -5365 2774 133 37 55 chrX 31230380 31230998 -145743142 - MER4B LTR ERV1 0 779 1 3241 114 85 11 chrX 31230998 31231332 -145742808 + L1MCa LINE L1 1059 1367 -5059 200 57 0 29 chrX 31231332 31231367 -145742773 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 3241 114 85 11 chrX 31231367 31231982 -145742158 + L1MCa LINE L1 1367 2183 -4243 1890 157 136 16 chrX 31231982 31232364 -145741776 + MSTA LTR MaLR 1 428 0 3241 114 85 11 chrX 31232364 31232416 -145741724 + L1MCa LINE L1 2183 2230 -4196 417 163 0 12 chrX 31232505 31232585 -145741555 + L1ME1 LINE L1 5578 5656 -510 389 237 64 4 chrX 31232602 31232767 -145741373 + L1ME1 LINE L1 5988 6184 0 1213 232 182 32 chrX 31233209 31233671 -145740469 - MLT1G LTR MaLR 0 590 60 6458 108 35 10 chrX 31233671 31235057 -145739083 + L1MA2 LINE L1 4879 6299 -5 548 242 16 0 chrX 31235077 31235201 -145738939 - MLT1G1 LTR MaLR -469 126 1 612 276 25 5 chrX 31235605 31235804 -145738336 + L1ME2 LINE L1 4945 5147 -999 * 2294 187 31 78 chrX 31235803 31236446 -145737694 + L1ME2 LINE L1 5542 6154 -10 23 54 0 0 chrX 31237076 31237113 -145737027 + AT_rich Low_complexity Low_complexity 1 37 0 792 283 129 27 chrX 31237323 31237694 -145736446 + MLT1I LTR MaLR 1 409 0 541 282 76 54 chrX 31237732 31238209 -145735931 - L1ME LINE L1 -302 5819 5317 238 306 36 22 chrX 31238878 31239100 -145735040 - L1ME LINE L1 -1705 4441 4217 461 286 75 0 chrX 31239327 31239488 -145734652 - Charlie8 DNA MER1_type -2153 264 92 1401 122 50 29 chrX 31239818 31240096 -145734044 - L1MA9 LINE L1 -5 6307 6024 895 269 57 73 chrX 31240107 31240638 -145733502 + LTR67 LTR ERVL 36 557 0 417 311 124 43 chrX 31241351 31241560 -145732580 - MIR SINE MIR -12 250 25 195 331 84 32 chrX 31241740 31241894 -145732246 - L2 LINE L2 -20 3252 3091 216 0 0 0 chrX 31241979 31242003 -145732137 + (CTG)n Simple_repeat Simple_repeat 3 26 0 27 0 0 0 chrX 31242306 31242333 -145731807 + AT_rich Low_complexity Low_complexity 1 27 0 287 220 193 18 chrX 31242771 31242880 -145731260 - MIR3 SINE MIR -19 189 62 262 268 0 0 chrX 31243102 31243158 -145730982 + MIR SINE MIR 201 256 -6 228 356 92 49 chrX 31243229 31243758 -145730382 - L2 LINE L2 -568 2746 2189 1648 69 0 0 chrX 31243758 31243975 -145730165 + L1PA7 LINE L1 5938 6154 0 228 356 92 49 chrX 31243975 31244018 -145730122 - L2 LINE L2 -1125 2189 2149 492 266 8 0 chrX 31244116 31244240 -145729900 - L2 LINE L2 -7 3306 3182 255 103 0 0 chrX 31244248 31244287 -145729853 + (CA)n Simple_repeat Simple_repeat 2 40 0 621 298 70 77 chrX 31244604 31245216 -145728924 - L2 LINE L2 -18 3295 2686 24 0 0 0 chrX 31247469 31247493 -145726647 + AT_rich Low_complexity Low_complexity 1 24 0 669 289 50 21 chrX 31247874 31248116 -145726024 - MIR SINE MIR -1 261 13 1221 251 7 46 chrX 31248266 31248701 -145725439 + LTR16B LTR ERVL 45 462 -2 706 199 0 0 chrX 31249956 31250087 -145724053 + FLAM_A SINE Alu 1 131 -2 348 329 112 54 chrX 31250257 31250649 -145723491 - L3 LINE CR1 -214 1363 949 373 245 80 53 chrX 31250670 31250785 -145723355 + MIR SINE MIR 31 155 -71 1826 258 26 2 chrX 31250785 31251238 -145722902 + LTR16B LTR ERVL 1 464 0 373 245 80 53 chrX 31251238 31251280 -145722860 + MIR SINE MIR 155 194 -32 360 305 76 52 chrX 31251304 31251515 -145722625 - L3 LINE CR1 -638 939 720 618 187 116 56 chrX 31251515 31251713 -145722427 - MER63A DNA MER1_type 0 210 1 360 305 76 52 chrX 31251713 31251750 -145722390 - L3 LINE CR1 -857 720 685 184 350 138 0 chrX 31253148 31253228 -145720912 + L2 LINE L2 3173 3263 -9 392 255 42 62 chrX 31254160 31254352 -145719788 - MER5A DNA MER1_type -1 188 1 4261 241 60 35 chrX 31254603 31256092 -145718048 + L2 LINE L2 1785 3313 0 191 290 47 37 chrX 31256498 31256605 -145717535 - L2 LINE L2 -93 3220 3113 643 236 128 10 chrX 31256610 31256813 -145717327 + MIR SINE MIR 35 261 -1 614 220 0 35 chrX 31257756 31257897 -145716243 - MER5A DNA MER1_type 0 189 54 1734 195 21 0 chrX 31258560 31258893 -145715247 + MER58B DNA MER1_type 1 340 -1 261 0 0 0 chrX 31260568 31260597 -145713543 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 650 256 6 6 chrX 31261825 31262001 -145712139 - MER69A DNA AcHobo -1 176 1 188 325 13 26 chrX 31262050 31262127 -145712013 - MIR3 SINE MIR -8 200 125 218 305 0 0 chrX 31264759 31264818 -145709322 + L2 LINE L2 3236 3294 -19 497 276 177 5 chrX 31265054 31265246 -145708894 + MIR SINE MIR 37 261 -1 27 0 0 0 chrX 31265295 31265322 -145708818 + AT_rich Low_complexity Low_complexity 1 27 0 22 88 0 0 chrX 31265558 31265615 -145708525 + AT_rich Low_complexity Low_complexity 1 57 0 315 250 155 0 chrX 31266016 31266100 -145708040 + L2 LINE L2 3217 3313 0 495 192 50 0 chrX 31266539 31266638 -145707502 - MIR SINE MIR -120 142 39 234 338 0 0 chrX 31266815 31266886 -145707254 + (TG)n Simple_repeat Simple_repeat 2 72 0 1894 184 0 0 chrX 31267611 31267921 -145706219 + AluJb SINE Alu 1 310 -2 2649 48 0 3 chrX 31268025 31268337 -145705803 + AluY SINE Alu 1 311 0 1936 122 64 10 chrX 31268400 31268696 -145705444 + AluSx SINE Alu 1 349 0 226 108 0 0 chrX 31268696 31268733 -145705407 + (A)n Simple_repeat Simple_repeat 1 180 0 975 246 0 0 chrX 31268793 31269013 -145705127 + L1ME2 LINE L1 5935 6154 -10 31016 96 12 59 chrX 31269896 31275678 -145698462 + L1PA7 LINE L1 1 5436 -718 1819 114 0 23 chrX 31275678 31275940 -145698200 + AluSg1 SINE Alu 40 295 -14 31016 96 12 59 chrX 31275940 31276615 -145697525 + L1PA7 LINE L1 5436 6141 -13 868 215 14 23 chrX 31277136 31277355 -145696785 + L1ME2 LINE L1 5939 6155 -9 207 0 0 0 chrX 31278823 31278846 -145695294 + (A)n Simple_repeat Simple_repeat 1 23 0 1967 143 0 55 chrX 31279281 31279609 -145694531 + AluJb SINE Alu 1 310 -2 2172 187 15 73 chrX 31279646 31280182 -145693958 - LTR40a LTR ERVL -14 505 1 246 237 34 0 chrX 31280402 31280461 -145693679 - L2 LINE L2 -2 3270 3210 24 32 0 0 chrX 31280563 31280594 -145693546 + AT_rich Low_complexity Low_complexity 1 31 0 487 306 22 38 chrX 31281058 31281241 -145692899 - MIR SINE MIR -49 213 34 1776 151 14 4 chrX 31282330 31282635 -145691505 - AluJo SINE Alu 0 310 3 931 138 32 37 chrX 31283337 31283409 -145690731 + MER53 DNA DNA 1 72 -117 1918 136 41 10 chrX 31283409 31283703 -145690437 - AluSx SINE Alu -9 303 1 931 138 32 37 chrX 31283703 31283819 -145690321 + MER53 DNA DNA 72 188 -1 2384 156 22 0 chrX 31286450 31286860 -145687280 + MSTB LTR MaLR 2 420 -6 318 250 94 0 chrX 31286860 31286956 -145687184 + MIR SINE MIR 93 197 -65 223 390 53 11 chrX 31286985 31287175 -145686965 + L2 LINE L2 2472 2669 -645 326 185 65 102 chrX 31287190 31287298 -145686842 + L2 LINE L2 3203 3306 -7 586 262 53 44 chrX 31288276 31288501 -145685639 - L2 LINE L2 -621 2693 2467 586 274 218 24 chrX 31288795 31289207 -145684933 - L3 LINE CR1 -149 1428 937 839 158 0 44 chrX 31291450 31291608 -145682532 + L1MB5 LINE L1 6024 6174 0 269 90 16 84 chrX 31291617 31291687 -145682453 + L1MB7 LINE L1 6109 6174 0 1651 128 0 24 chrX 31291717 31291967 -145682173 + AluJo SINE Alu 44 287 -25 2404 100 0 0 chrX 31292700 31293009 -145681131 + AluSx SINE Alu 1 309 -3 1352 201 45 48 chrX 31293204 31293517 -145680623 + AluJo SINE Alu 1 312 0 455 250 33 22 chrX 31293867 31294047 -145680093 + HsTC2 DNA Tc2 480 661 -1237 2446 63 3 0 chrX 31294047 31294350 -145679790 + AluY SINE Alu 1 304 -7 349 255 90 90 chrX 31294758 31295068 -145679072 + L1ME4a LINE L1 2725 3034 -3112 387 296 53 23 chrX 31295099 31295161 -145678979 + MER5B DNA MER1_type 1 60 -118 2051 129 10 7 chrX 31295161 31295464 -145678676 + AluSq SINE Alu 1 304 -9 387 296 53 23 chrX 31295464 31295533 -145678607 + MER5B DNA MER1_type 60 136 -42 289 194 126 29 chrX 31295535 31295638 -145678502 + MER39 LTR ERV1 1 113 -429 1226 191 109 30 chrX 31295673 31296056 -145678084 + MER39 LTR ERV1 92 584 -1 223 250 0 0 chrX 31296057 31296101 -145678039 - MER5B DNA MER1_type -134 44 1 2242 91 7 7 chrX 31296128 31296426 -145677714 + AluSx SINE Alu 1 298 -14 765 98 9 181 chrX 31296975 31297096 -145677044 + MER5B DNA MER1_type 1 71 -107 339 25 0 0 chrX 31297096 31297136 -145677004 + (CA)n Simple_repeat Simple_repeat 1 40 0 765 98 9 181 chrX 31297136 31297229 -145676911 + MER5B DNA MER1_type 71 178 0 350 298 103 62 chrX 31297434 31297676 -145676464 + L1ME4a LINE L1 3972 4223 -1923 2364 82 0 0 chrX 31297997 31298288 -145675852 - AluSx SINE Alu -21 291 1 25 31 0 0 chrX 31298828 31298860 -145675280 + AT_rich Low_complexity Low_complexity 1 32 0 384 287 52 68 chrX 31299020 31299386 -145674754 + L1ME4a LINE L1 5530 5889 -232 2053 92 0 41 chrX 31299390 31299684 -145674456 + AluSx SINE Alu 1 282 -30 264 137 0 0 chrX 31299684 31299735 -145674405 + (G)n Simple_repeat Simple_repeat 1 51 0 194 62 31 0 chrX 31299735 31299767 -145674373 + (CAAAAA)n Simple_repeat Simple_repeat 6 38 0 2412 65 0 0 chrX 31300256 31300550 -145673590 - AluY SINE Alu -17 294 1 180 0 0 0 chrX 31300744 31300764 -145673376 + (T)n Simple_repeat Simple_repeat 1 20 0 183 162 0 0 chrX 31302208 31302245 -145671895 + (CAG)n Simple_repeat Simple_repeat 2 38 0 22 17 0 68 chrX 31303778 31303800 -145670340 + AT_rich Low_complexity Low_complexity 1 23 -32 2079 118 3 40 chrX 31303800 31304123 -145670017 + AluJo SINE Alu 1 311 -1 22 17 0 68 chrX 31304123 31304141 -145669999 + AT_rich Low_complexity Low_complexity 23 38 -17 968 111 0 0 chrX 31304141 31304267 -145669873 + FLAM_C SINE Alu 1 126 -7 22 17 0 68 chrX 31304267 31304284 -145669856 + AT_rich Low_complexity Low_complexity 38 55 0 26 50 0 0 chrX 31304339 31304379 -145669761 + AT_rich Low_complexity Low_complexity 1 40 0 648 285 101 21 chrX 31306304 31306722 -145667418 - HAL1b LINE L1 -646 702 252 2469 77 0 3 chrX 31306738 31307049 -145667091 - AluSg SINE Alu 0 310 1 208 312 16 16 chrX 31309193 31309318 -145664822 + (TA)n Simple_repeat Simple_repeat 2 126 0 2301 96 28 0 chrX 31309318 31309673 -145664467 - Tigger4(Zombi) DNA MER2_type -1 2730 2366 2127 104 124 3 chrX 31309675 31310031 -145664109 + MSTA LTR MaLR 1 399 -29 1323 98 5 16 chrX 31310031 31310215 -145663925 - AluSg/x SINE Alu 0 312 131 1969 101 77 3 chrX 31310216 31310542 -145663598 - Tigger4(Zombi) DNA MER2_type -555 2176 1827 376 77 0 0 chrX 31310543 31310595 -145663545 - MADE1 DNA Mariner -1 79 28 4388 119 39 7 chrX 31310606 31311306 -145662834 - Tigger4(Zombi) DNA MER2_type -1962 769 48 414 0 0 0 chrX 31311318 31311364 -145662776 + (TG)n Simple_repeat Simple_repeat 2 47 0 247 397 84 0 chrX 31311695 31311826 -145662314 - L2 LINE L2 -23 3249 3108 266 324 0 14 chrX 31311913 31311984 -145662156 - L2 LINE L2 -21 3251 3182 * 758 289 59 8 chrX 31311976 31312215 -145661925 - MIR SINE MIR -3 259 9 434 310 189 28 chrX 31312338 31312826 -145661314 - L2 LINE L2 -224 3048 2485 21 0 0 0 chrX 31313741 31313762 -145660378 + AT_rich Low_complexity Low_complexity 1 21 0 662 276 61 0 chrX 31314139 31314335 -145659805 - MIR SINE MIR -48 214 7 2302 102 0 16 chrX 31314512 31314815 -145659325 + AluSg SINE Alu 1 298 -12 186 133 0 0 chrX 31314817 31314847 -145659293 + (ATG)n Simple_repeat Simple_repeat 2 31 0 249 57 0 0 chrX 31315031 31315066 -145659074 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 754 223 49 61 chrX 31315432 31315649 -145658491 + L1ME2 LINE L1 5906 6282 -52 2400 92 0 0 chrX 31315649 31315954 -145658186 + AluSg SINE Alu 1 305 -5 754 223 49 61 chrX 31315954 31316005 -145658135 + L1ME2 LINE L1 6282 6332 -2 362 248 8 33 chrX 31316066 31316187 -145657953 + L1MD2 LINE L1 6067 6184 -175 * 647 131 15 200 chrX 31316161 31316216 -145657924 + L1MD3 LINE L1 7784 7847 -148 4506 78 3 11 chrX 31316216 31316831 -145657309 + MER4B LTR ERV1 1 610 0 647 131 15 200 chrX 31316831 31317035 -145657105 + L1MD3 LINE L1 7847 7995 0 25 31 0 0 chrX 31317144 31317176 -145656964 + AT_rich Low_complexity Low_complexity 1 32 0 1024 127 17 29 chrX 31317391 31317540 -145656600 + MLT1B LTR MaLR 218 366 -24 3759 136 9 79 chrX 31317540 31317899 -145656241 + LTR8 LTR ERV1 1 283 -408 2227 112 0 7 chrX 31317899 31318203 -145655937 + AluSc SINE Alu 3 304 -5 3759 136 9 79 chrX 31318203 31318586 -145655554 + LTR8 LTR ERV1 283 691 0 1024 127 17 29 chrX 31318586 31318609 -145655531 + MLT1B LTR MaLR 366 388 -2 2851 200 61 10 chrX 31318611 31319297 -145654843 - L1ME1 LINE L1 -9 6157 5437 22 56 0 0 chrX 31319966 31320002 -145654138 + AT_rich Low_complexity Low_complexity 1 36 0 3212 164 25 5 chrX 31320140 31320701 -145653439 + MER90 LTR ERV1 1 572 -42 31 0 0 0 chrX 31320739 31320770 -145653370 + AT_rich Low_complexity Low_complexity 1 31 0 647 254 38 22 chrX 31321344 31321529 -145652611 - MIR3 SINE MIR -6 202 15 473 102 45 57 chrX 31321644 31321732 -145652408 - MER90 LTR ERV1 -361 253 167 1385 117 20 159 chrX 31322025 31322048 -145652092 + MER96B DNA MER1_type? 110 135 -282 2467 87 0 0 chrX 31322048 31322357 -145651783 + AluSx SINE Alu 1 309 -3 1385 117 20 159 chrX 31322357 31322691 -145651449 + MER96B DNA MER1_type? 135 417 0 253 207 17 17 chrX 31322691 31322749 -145651391 - MER20B DNA MER1_type -695 88 31 307 311 66 19 chrX 31322774 31322880 -145651260 - MLT1J LTR MaLR -77 434 324 2937 143 33 19 chrX 31322915 31323396 -145650744 + LTR45B LTR ERV1 2 489 0 323 272 65 30 chrX 31323513 31323682 -145650458 - MLT1J LTR MaLR -336 175 1 1637 204 32 60 chrX 31323819 31324289 -145649851 - LTR16A1 LTR ERVL 0 457 1 2202 107 0 0 chrX 31324736 31325017 -145649123 + AluSx SINE Alu 17 297 -15 183 80 0 0 chrX 31325483 31325508 -145648632 + (A)n Simple_repeat Simple_repeat 1 25 0 180 111 0 0 chrX 31328726 31328753 -145645387 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 1619 118 57 0 chrX 31329189 31329451 -145644689 + L1MA8 LINE L1 6013 6289 -2 240 111 0 0 chrX 31330164 31330200 -145643940 + (A)n Simple_repeat Simple_repeat 1 36 0 504 289 100 30 chrX 31330392 31330739 -145643401 + L1ME2 LINE L1 5477 5858 -306 2410 89 0 3 chrX 31330740 31331044 -145643096 + AluSq SINE Alu 1 303 -10 192 40 0 0 chrX 31331663 31331688 -145642452 + (TC)n Simple_repeat Simple_repeat 1 25 0 207 171 0 0 chrX 31331688 31331723 -145642417 + (CA)n Simple_repeat Simple_repeat 2 36 0 221 358 41 32 chrX 31331873 31331996 -145642144 - L2 LINE L2 -11 3302 3179 2966 139 12 7 chrX 31332013 31332437 -145641703 + MSTB LTR MaLR 1 426 0 576 285 52 23 chrX 31332457 31332682 -145641458 - MIR SINE MIR -4 258 30 196 298 64 32 chrX 31333021 31333115 -145641025 - L2 LINE L2 -16 3256 3160 231 320 62 10 chrX 31333380 31333477 -145640663 - L2 LINE L2 -2 3270 3169 956 192 68 57 chrX 31333480 31333643 -145640497 + L1MB5 LINE L1 5050 5219 -927 671 202 8 23 chrX 31333643 31333772 -145640368 + FLAM_C SINE Alu 5 131 -2 956 192 68 57 chrX 31333772 31333889 -145640251 + L1MB5 LINE L1 5219 5333 -813 621 90 0 0 chrX 31333889 31333967 -145640173 - LTR3b LTR ERVK 0 500 423 299 56 0 0 chrX 31333968 31334004 -145640136 - LTR3b LTR ERVK -42 458 423 3701 83 11 0 chrX 31334010 31334479 -145639661 - LTR3b LTR ERVK -10 490 17 4577 150 19 49 chrX 31334479 31334572 -145639568 + L1MB5 LINE L1 5348 5442 -732 1787 159 14 27 chrX 31334572 31334867 -145639273 + AluJb SINE Alu 1 291 -21 4577 150 19 49 chrX 31334867 31335626 -145638514 + L1MB5 LINE L1 5442 6174 0 2181 127 3 0 chrX 31336071 31336370 -145637770 - AluSq SINE Alu -12 301 2 1018 214 122 13 chrX 31336586 31336890 -145637250 - MER113 DNA MER1_type? -132 389 53 21 0 0 0 chrX 31336978 31336999 -145637141 + AT_rich Low_complexity Low_complexity 1 21 0 2353 115 0 0 chrX 31336999 31337311 -145636829 - AluSx SINE Alu 0 312 1 2827 246 37 39 chrX 31338090 31338870 -145635270 - L2 LINE L2 -687 2627 1849 265 224 0 0 chrX 31339388 31339437 -145634703 + L2 LINE L2 3261 3309 -4 362 326 65 11 chrX 31339577 31339761 -145634379 + MIR SINE MIR 10 203 -59 1800 82 0 0 chrX 31339871 31340090 -145634050 + AluSg/x SINE Alu 73 291 -21 3593 173 36 40 chrX 31340884 31341578 -145632562 + LTR8 LTR ERV1 1 691 0 197 174 0 43 chrX 31342933 31342965 -145631175 - MIR SINE MIR -40 222 191 2224 121 0 3 chrX 31342965 31343262 -145630878 - AluJb SINE Alu -16 296 1 197 174 0 43 chrX 31343262 31343275 -145630865 - MIR SINE MIR -71 191 179 1723 137 42 0 chrX 31343289 31343574 -145630566 + L1MA5 LINE L1 5977 6273 -27 383 242 8 23 chrX 31343575 31343707 -145630433 + L1MC4a LINE L1 5295 5424 -2384 438 204 20 120 chrX 31343709 31343786 -145630354 - MIR SINE MIR -66 196 144 2439 97 3 0 chrX 31343786 31344096 -145630044 - AluJb SINE Alu -1 311 1 438 204 20 120 chrX 31344096 31344196 -145629944 - MIR SINE MIR -118 144 36 21 36 0 0 chrX 31344643 31344671 -145629469 + AT_rich Low_complexity Low_complexity 1 28 0 286 260 141 38 chrX 31345355 31345501 -145628639 + MLT1L LTR MaLR 234 364 -251 4515 87 25 40 chrX 31345501 31346145 -145627995 + MER51A LTR ERV1 1 634 0 286 260 141 38 chrX 31346145 31346250 -145627890 + MLT1L LTR MaLR 364 615 0 2263 221 12 45 chrX 31346353 31346676 -145627464 + L1MD2 LINE L1 4682 5014 -1132 1648 175 7 17 chrX 31346676 31346973 -145627167 - AluJo SINE Alu -17 295 2 2263 221 12 45 chrX 31346973 31347035 -145627105 + L1MD2 LINE L1 5014 5076 -1070 1727 168 3 27 chrX 31347035 31347332 -145626808 + AluJb SINE Alu 1 290 -22 2263 221 12 45 chrX 31347332 31347587 -145626553 + L1MD2 LINE L1 5076 5302 -844 1008 158 0 0 chrX 31347592 31347759 -145626381 + AluSg/x SINE Alu 137 303 0 5379 166 33 24 chrX 31347762 31348703 -145625437 + L1MD2 LINE L1 5293 6247 -112 1856 171 0 22 chrX 31348703 31349019 -145625121 + AluJo SINE Alu 1 309 -3 5379 166 33 24 chrX 31349019 31349134 -145625006 + L1MD2 LINE L1 6247 6359 0 1136 270 79 29 chrX 31350799 31351219 -145622921 + MLT1L LTR MaLR 70 613 -2 2344 85 7 10 chrX 31351536 31351841 -145622299 - AluSp SINE Alu -9 304 1 714 182 7 7 chrX 31351841 31351984 -145622156 - L1M4 LINE L1 -838 5308 5166 925 235 58 72 chrX 31351987 31352473 -145621667 + L1MC4a LINE L1 5691 6169 -1639 28 29 0 0 chrX 31352650 31352685 -145621455 + AT_rich Low_complexity Low_complexity 1 35 0 1441 142 62 113 chrX 31352874 31353172 -145620968 + L1MB5 LINE L1 5186 5454 -909 2315 88 10 3 chrX 31353172 31353479 -145620661 + AluSx SINE Alu 1 309 -3 1441 142 62 113 chrX 31353479 31353638 -145620502 + L1MB5 LINE L1 5454 5620 -743 3875 187 74 45 chrX 31353641 31354685 -145619455 + Charlie6 DNA MER1_type 2309 3382 -118 392 191 0 0 chrX 31354683 31354746 -145619394 + Charlie6 DNA MER1_type 2443 2505 -995 * 961 181 156 0 chrX 31354783 31354988 -145619152 - L1MC/D LINE L1 -2369 5626 5390 650 211 30 0 chrX 31354988 31355121 -145619019 + Charlie6 DNA MER1_type 3357 3493 -7 795 113 0 93 chrX 31355121 31355271 -145618869 + L1MB5 LINE L1 6038 6173 -1 1064 179 0 67 chrX 31355366 31355590 -145618550 + AluJb SINE Alu 85 293 -19 253 241 42 94 chrX 31355609 31355800 -145618340 + MER112 DNA MER1_type 2 182 -78 228 320 32 80 chrX 31355961 31355976 -145618164 + L3 LINE CR1 1402 1416 -161 2361 85 0 0 chrX 31355976 31356270 -145617870 + AluSx SINE Alu 1 294 -18 228 320 32 80 chrX 31356270 31356379 -145617761 + L3 LINE CR1 1416 1520 -57 183 156 0 0 chrX 31357083 31357115 -145617025 + (CA)n Simple_repeat Simple_repeat 2 33 0 300 223 64 53 chrX 31357162 31357256 -145616884 + L1ME3A LINE L1 4818 4912 -1234 234 263 13 0 chrX 31357310 31357386 -145616754 + L1ME3A LINE L1 5258 5334 -812 2355 70 0 24 chrX 31357437 31357735 -145616405 + AluSx SINE Alu 1 291 -21 1133 233 51 19 chrX 31357755 31358345 -145615795 + L1ME3A LINE L1 5362 6011 -159 425 169 65 5 chrX 31358355 31358478 -145615662 - MER53 DNA DNA 0 189 1 2198 125 0 3 chrX 31358513 31358817 -145615323 - AluJb SINE Alu -9 303 1 2459 57 7 0 chrX 31359663 31359960 -145614180 + AluSx SINE Alu 1 299 -13 454 273 168 23 chrX 31360150 31360370 -145613770 + MIR SINE MIR 11 262 0 913 104 15 22 chrX 31361267 31361280 -145612860 - AluJo SINE Alu -178 134 122 189 0 0 0 chrX 31361280 31361301 -145612839 + (TTTG)n Simple_repeat Simple_repeat 3 23 0 913 104 15 22 chrX 31361301 31361422 -145612718 - AluJo SINE Alu -190 122 1 248 304 50 39 chrX 31361856 31362037 -145612103 + L2 LINE L2 2833 3015 -257 1820 109 87 0 chrX 31362332 31362607 -145611533 + AluSg SINE Alu 1 299 -11 555 286 121 42 chrX 31362610 31363167 -145610973 - L1ME2 LINE L1 -298 5866 5257 2273 128 0 0 chrX 31363296 31363608 -145610532 - AluSx SINE Alu 0 312 1 2874 181 25 88 chrX 31363709 31363989 -145610151 - L1MC4 LINE L1 0 8042 7746 1514 153 12 24 chrX 31363989 31364244 -145609896 - AluJo SINE Alu -17 295 44 2874 181 25 88 chrX 31364244 31364306 -145609834 - L1MC4 LINE L1 -296 7746 7682 1750 142 52 7 chrX 31364306 31364594 -145609546 - AluJb SINE Alu -11 301 1 2874 181 25 88 chrX 31364594 31364783 -145609357 - L1MC4 LINE L1 -360 7682 7568 2372 100 3 0 chrX 31364783 31365094 -145609046 + AluSx SINE Alu 1 312 0 2874 181 25 88 chrX 31365094 31365313 -145608827 - L1MC4 LINE L1 -474 7568 7337 520 276 14 0 chrX 31365339 31365497 -145608643 - L1MC4 LINE L1 -1188 6620 6461 416 153 0 0 chrX 31365497 31365556 -145608584 + Tigger2 DNA MER2_type 2 60 -2658 345 122 0 0 chrX 31365571 31365620 -145608520 + MER83B LTR ERV1 226 274 -104 935 201 6 0 chrX 31365625 31365784 -145608356 - MER8 DNA MER2_type -79 160 1 867 242 47 23 chrX 31365784 31366040 -145608100 - L1MC4a LINE L1 -1345 6463 6202 2415 84 0 0 chrX 31366049 31366347 -145607793 - AluSc SINE Alu -11 298 1 904 294 63 60 chrX 31366396 31366589 -145607551 - L1MEd LINE L1 -2892 3237 3046 3076 122 15 34 chrX 31366589 31367038 -145607102 + LTR24 LTR ERV1 1 457 -10 186 43 0 0 chrX 31367038 31367061 -145607079 + (TC)n Simple_repeat Simple_repeat 2 24 0 2412 106 0 0 chrX 31367061 31367372 -145606768 - AluSx SINE Alu -1 311 1 3076 122 15 34 chrX 31367372 31367397 -145606743 + LTR24 LTR ERV1 455 467 0 904 294 63 60 chrX 31367397 31367711 -145606429 - L1MEd LINE L1 -3083 3046 2735 2334 105 0 9 chrX 31367711 31368026 -145606114 - AluSx SINE Alu 0 312 1 904 294 63 60 chrX 31368026 31368620 -145605520 - L1MEd LINE L1 -3394 2735 2131 350 244 36 76 chrX 31368902 31369152 -145604988 - L1MEd LINE L1 -5171 948 709 340 235 12 35 chrX 31369588 31369673 -145604467 - L2 LINE L2 -6 3307 3225 4389 189 23 34 chrX 31370331 31371311 -145602829 + L1MB7 LINE L1 3560 4528 -1618 1987 140 0 3 chrX 31371311 31371597 -145602543 - AluSx SINE Alu -27 285 1 4389 189 23 34 chrX 31371597 31371732 -145602408 + L1MB7 LINE L1 4528 4663 -1483 723 193 129 0 chrX 31371764 31371935 -145602205 + AluSp SINE Alu 117 309 -4 4147 169 31 48 chrX 31371935 31372795 -145601345 + L1MB7 LINE L1 4678 5512 -672 2028 107 7 4 chrX 31372795 31373101 -145601039 + AluSx SINE Alu 11 312 0 4147 169 31 48 chrX 31373101 31373753 -145600387 + L1MB7 LINE L1 5512 6173 -11 2248 85 0 0 chrX 31373771 31374078 -145600062 - AluSc SINE Alu 0 307 1 722 215 6 19 chrX 31374089 31374247 -145599893 - MER3 DNA MER1_type -53 156 1 722 194 44 103 chrX 31374271 31374501 -145599639 + L1MC5 LINE L1 7510 7717 -244 2306 105 0 0 chrX 31374501 31374819 -145599321 + AluSx SINE Alu 1 318 0 722 194 44 103 chrX 31374819 31374927 -145599213 + L1MC5 LINE L1 7717 7830 -131 5569 125 27 49 chrX 31374929 31375365 -145598775 + L1MA8 LINE L1 5163 5607 -684 2252 91 0 0 chrX 31375365 31375677 -145598463 + AluSq SINE Alu 1 312 0 5569 125 27 49 chrX 31375677 31375844 -145598296 + L1MA8 LINE L1 5607 5776 -515 195 42 0 0 chrX 31375844 31375868 -145598272 + (TA)n Simple_repeat Simple_repeat 1 24 0 5569 125 27 49 chrX 31375868 31376413 -145597727 + L1MA8 LINE L1 5776 6291 0 1760 178 7 13 chrX 31376432 31376736 -145597404 + AluJo SINE Alu 1 302 -10 262 280 0 21 chrX 31376737 31376830 -145597310 + L1MC5 LINE L1 7822 7912 -49 447 19 0 0 chrX 31376838 31376890 -145597250 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 21 0 0 0 chrX 31377191 31377212 -145596928 + AT_rich Low_complexity Low_complexity 1 21 0 541 265 41 8 chrX 31377525 31377770 -145596370 + L1ME3A LINE L1 4316 4568 -1578 309 221 10 39 chrX 31377796 31377900 -145596240 + L1ME3A LINE L1 5862 5962 -208 2205 104 27 0 chrX 31378131 31378430 -145595710 - AluSx SINE Alu -5 307 1 601 71 0 0 chrX 31378442 31378527 -145595613 - L1PA6 LINE L1 -1 6153 6069 371 343 36 7 chrX 31379242 31379379 -145594761 - MIR SINE MIR -113 149 9 193 156 0 143 chrX 31379432 31379509 -145594631 - L2 LINE L2 -1039 2275 2210 1674 205 40 30 chrX 31379590 31379995 -145594145 + LTR2 LTR ERV1 41 449 0 275 114 0 0 chrX 31380010 31380043 -145594097 - L1PA5 LINE L1 -278 5876 5841 2381 35 3 0 chrX 31380043 31380331 -145593809 + L1PA5 LINE L1 5864 6152 -2 658 246 161 5 chrX 31380454 31380653 -145593487 + MIR SINE MIR 20 249 -13 350 141 141 0 chrX 31381056 31381127 -145593013 - L1PB4 LINE L1 -11 6145 6065 600 281 50 63 chrX 31381224 31381700 -145592440 + L1MEd LINE L1 788 1257 -4862 2266 229 19 28 chrX 31381824 31382457 -145591683 + L1ME1 LINE L1 5516 6142 -24 323 72 0 175 chrX 31382461 31382516 -145591624 - L1MB8 LINE L1 -1 6177 6145 2129 75 0 4 chrX 31382516 31382781 -145591359 - AluSq SINE Alu -20 293 30 323 72 0 175 chrX 31382781 31382822 -145591318 - L1MB8 LINE L1 -33 6145 6098 1683 91 40 33 chrX 31382823 31383099 -145591041 - L1MA8 LINE L1 0 6291 6014 236 250 13 0 chrX 31383407 31383483 -145590657 + L1 LINE L1 3686 3762 -2384 2188 128 0 0 chrX 31383485 31383782 -145590358 + AluSx SINE Alu 1 297 -15 519 308 50 33 chrX 31383993 31384292 -145589848 + L1MEd LINE L1 5 308 -5811 4511 92 18 191 chrX 31384361 31385096 -145589044 + Tigger3b DNA MER2_type 1 861 -2168 2337 104 3 0 chrX 31385096 31385403 -145588737 + AluSq SINE Alu 1 308 -5 4511 92 18 191 chrX 31385403 31385505 -145588635 + Tigger3b DNA MER2_type 861 979 -2050 1188 150 62 5 chrX 31385505 31385698 -145588442 - AluJb SINE Alu -108 204 1 4511 92 18 191 chrX 31385698 31386148 -145587992 + Tigger3b DNA MER2_type 979 1232 0 270 328 133 52 chrX 31386251 31386325 -145587815 + L2 LINE L2 1866 1933 -1381 2126 127 0 0 chrX 31386325 31386617 -145587523 - AluSx SINE Alu -20 292 1 270 328 133 52 chrX 31386617 31386926 -145587214 + L2 LINE L2 1933 2280 -1034 1540 246 91 26 chrX 31386930 31387434 -145586706 + MER34 LTR ERV1 6 542 0 505 349 105 31 chrX 31387443 31387984 -145586156 + L2 LINE L2 2285 2865 -449 230 160 85 5 chrX 31388006 31388111 -145586029 + AluJo SINE Alu 115 287 -15 334 333 212 19 chrX 31388141 31388462 -145585678 + L2 LINE L2 2890 3272 0 375 228 19 25 chrX 31388662 31388820 -145585320 - HAL1b LINE L1 -194 1154 998 254 303 115 66 chrX 31389461 31389705 -145584435 + L2 LINE L2 3016 3271 -1 279 157 0 0 chrX 31389709 31389760 -145584380 + GA-rich Low_complexity Low_complexity 2 52 0 187 338 23 45 chrX 31389761 31389777 -145584363 - L2 LINE L2 -214 3058 3043 198 103 0 0 chrX 31389777 31389806 -145584334 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 187 338 23 45 chrX 31389806 31389922 -145584218 - L2 LINE L2 -229 3043 2929 1756 102 0 147 chrX 31389946 31390300 -145583840 + AluSx SINE Alu 1 302 0 740 232 79 6 chrX 31390943 31391120 -145583020 + MIR SINE MIR 13 202 -60 311 285 126 29 chrX 31391147 31391424 -145582716 - L2 LINE L2 -1132 2182 1879 421 229 0 10 chrX 31391845 31391941 -145582199 + MER34 LTR ERV1 1 95 -447 734 217 29 6 chrX 31391944 31392119 -145582021 + MER34 LTR ERV1 362 540 -2 216 0 0 0 chrX 31392220 31392244 -145581896 + (GA)n Simple_repeat Simple_repeat 1 24 0 3812 183 6 25 chrX 31392357 31392568 -145581572 - L1P LINE L1 -910 5236 5023 2112 137 16 0 chrX 31392568 31392874 -145581266 - AluJb SINE Alu -1 311 1 3812 183 6 25 chrX 31392874 31393514 -145580626 - L1P LINE L1 -1123 5023 4401 * 5651 108 17 7 chrX 31393512 31394400 -145579740 + L1PA16 LINE L1 5260 6156 -10 2604 139 29 5 chrX 31394460 31394876 -145579264 + MSTB LTR MaLR 1 426 0 3004 165 37 15 chrX 31395279 31395825 -145578315 - MER68 LTR ERV1 -3 559 2 225 0 0 0 chrX 31395954 31395979 -145578161 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 267 31 0 0 chrX 31395978 31396010 -145578130 + (GA)n Simple_repeat Simple_repeat 1 32 0 2080 105 0 21 chrX 31396024 31396310 -145577830 + AluSx SINE Alu 24 303 -9 311 304 101 13 chrX 31397002 31397138 -145577002 - L2 LINE L2 0 3313 3160 2250 108 0 6 chrX 31397138 31397452 -145576688 + AluSx SINE Alu 1 312 0 311 304 101 13 chrX 31397452 31397473 -145576667 - L2 LINE L2 -153 3160 3142 327 399 91 10 chrX 31397650 31397958 -145576182 - L2 LINE L2 -400 2914 2582 1662 192 11 21 chrX 31398024 31398311 -145575829 + AluJb SINE Alu 1 284 -28 1994 156 10 0 chrX 31398496 31398803 -145575337 - AluJo SINE Alu -2 310 1 343 283 9 0 chrX 31399017 31399123 -145575017 - L1MC4a LINE L1 -1874 5934 5828 312 91 0 0 chrX 31399130 31399174 -145574966 + U6 snRNA snRNA 2 45 -62 2361 106 0 3 chrX 31399190 31399501 -145574639 - AluSx SINE Alu -2 310 1 237 271 35 0 chrX 31399503 31399588 -145574552 - L1MC4a LINE L1 -1983 5825 5738 195 100 0 0 chrX 31399588 31399618 -145574522 + (TTA)n Simple_repeat Simple_repeat 1 30 0 237 337 53 98 chrX 31400546 31400831 -145573309 + L3b LINE CR1 1172 1443 -140 441 0 0 0 chrX 31401369 31401418 -145572722 + (TG)n Simple_repeat Simple_repeat 1 49 0 2216 86 4 0 chrX 31401418 31401697 -145572443 - AluSp SINE Alu -33 280 1 231 333 69 13 chrX 31401975 31402134 -145572006 - L3 LINE CR1 -565 1012 845 2997 129 29 76 chrX 31402208 31402663 -145571477 + MER41A LTR ERV1 1 425 -129 2260 113 0 0 chrX 31402663 31402973 -145571167 - AluY SINE Alu -1 310 1 2997 129 29 76 chrX 31402973 31403097 -145571043 + MER41A LTR ERV1 425 553 -1 2384 104 0 0 chrX 31403284 31403583 -145570557 + AluSg SINE Alu 1 299 -11 611 147 0 0 chrX 31403634 31403736 -145570404 - MER2 DNA MER2_type -135 210 109 277 252 93 22 chrX 31403742 31403881 -145570259 - MLT1L LTR MaLR -1 614 466 745 219 39 11 chrX 31404146 31404324 -145569816 + MIR SINE MIR 69 251 -11 318 268 97 8 chrX 31404327 31404532 -145569608 + L1MC4 LINE L1 5707 5816 -305 2529 149 14 65 chrX 31405739 31406118 -145568022 + L1MA9 LINE L1 5230 5627 -685 2460 62 0 3 chrX 31406118 31406422 -145567718 + AluY SINE Alu 1 303 -8 2324 97 0 3 chrX 31406432 31406743 -145567397 + AluSp SINE Alu 2 311 -2 2529 149 14 65 chrX 31406743 31406935 -145567205 + L1MA9 LINE L1 5636 5782 -530 336 238 71 0 chrX 31406945 31407029 -145567111 + L1MC4 LINE L1 6614 6703 -1339 * 340 296 0 0 chrX 31406954 31407042 -145567098 - L1MC4 LINE L1 -1340 6702 6615 213 94 0 0 chrX 31407042 31407074 -145567066 + (CA)n Simple_repeat Simple_repeat 1 32 0 1436 130 16 49 chrX 31407100 31407347 -145566793 + AluJb SINE Alu 55 293 -19 1104 187 32 166 chrX 31407347 31407883 -145566257 + L1MA9 LINE L1 5824 6287 -25 1479 170 87 8 chrX 31407883 31408148 -145565992 - AluJb SINE Alu -26 286 1 22 35 0 0 chrX 31408148 31408177 -145565963 + AT_rich Low_complexity Low_complexity 1 29 0 551 284 83 27 chrX 31408253 31408463 -145565677 + MIR SINE MIR 1 218 -44 1549 123 0 5 chrX 31408575 31408787 -145565353 + AluSg/x SINE Alu 85 295 -17 288 0 0 0 chrX 31409984 31410016 -145564124 + (CA)n Simple_repeat Simple_repeat 1 32 0 180 77 0 0 chrX 31410457 31410483 -145563657 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1707 209 56 13 chrX 31410704 31411154 -145562986 + L1ME2 LINE L1 5694 6162 -2 1931 150 0 0 chrX 31411175 31411462 -145562678 + AluJo SINE Alu 1 287 -25 2279 103 3 0 chrX 31411710 31412036 -145562104 - AluSx SINE Alu 0 312 1 2290 119 0 0 chrX 31412844 31413156 -145560984 - AluSx SINE Alu 0 312 1 15820 106 15 35 chrX 31413299 31415763 -145558377 + Tigger1 DNA MER2_type 4 2418 0 1680 143 115 3 chrX 31415877 31416199 -145557941 - MER46B DNA MER2_type 0 236 4 266 235 0 0 chrX 31416498 31416549 -145557591 - L2 LINE L2 0 3313 3263 22 0 0 0 chrX 31417993 31418015 -145556125 + AT_rich Low_complexity Low_complexity 1 22 0 1913 218 59 50 chrX 31418069 31418225 -145555915 - MER97a DNA MER1_type? 0 894 741 2211 162 6 3 chrX 31418225 31418589 -145555551 + MLT1A1 LTR MaLR 1 365 0 1913 218 59 50 chrX 31418589 31418669 -145555471 - MER97a DNA MER1_type? -153 741 663 726 91 0 0 chrX 31418669 31418768 -145555372 + HY3 scRNA scRNA 1 99 -2 1913 218 59 50 chrX 31418768 31419222 -145554918 - MER97a DNA MER1_type? -231 663 197 1292 177 41 4 chrX 31419222 31419488 -145554652 + MER33 DNA MER1_type 1 276 -48 16552 166 15 43 chrX 31419501 31419981 -145554159 - L1MA4 LINE L1 -5 7714 7222 1860 161 7 0 chrX 31419981 31420279 -145553861 + AluJb SINE Alu 1 300 -12 16552 166 15 43 chrX 31420279 31420512 -145553628 - L1MA4 LINE L1 -497 7222 6984 2134 129 3 0 chrX 31420512 31420822 -145553318 - AluSx SINE Alu -1 311 1 16552 166 15 43 chrX 31420822 31421838 -145552302 - L1MA4 LINE L1 -735 6984 5940 2207 89 11 0 chrX 31421838 31422147 -145551993 + AluSx SINE Alu 1 312 0 16552 166 15 43 chrX 31422147 31424817 -145549323 - L1MA4 LINE L1 -1779 5940 3195 2213 129 3 0 chrX 31424817 31425126 -145549014 - AluSg SINE Alu 0 310 1 16552 166 15 43 chrX 31425126 31425282 -145548858 - L1MA4 LINE L1 -4524 3195 3283 1708 152 3 33 chrX 31425282 31425585 -145548555 + AluJo SINE Alu 14 307 -5 16552 166 15 43 chrX 31425585 31425623 -145548517 - L1MA4 LINE L1 -4435 3284 3246 325 132 19 132 chrX 31425627 31425733 -145548407 + MER33 DNA MER1_type 231 324 0 1057 173 52 5 chrX 31425736 31425927 -145548213 - MER97a DNA MER1_type? -693 201 2 198 0 0 0 chrX 31426430 31426452 -145547688 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 521 291 48 15 chrX 31426471 31426677 -145547463 - MLT1J LTR MaLR -8 503 291 1924 201 19 5 chrX 31426684 31427111 -145547029 + L1M4 LINE L1 4387 4819 -1327 * 2845 196 39 11 chrX 31427087 31427730 -145546410 + L1MDa LINE L1 1737 2397 -4143 796 125 100 0 chrX 31427747 31427867 -145546273 + MER20 DNA MER1_type 88 219 0 875 155 14 20 chrX 31428099 31428247 -145545893 + AluJo SINE Alu 4 150 -162 22101 161 50 16 chrX 31428247 31429533 -145544607 - L1 LINE L1 -1193 6372 5131 1922 140 49 7 chrX 31429533 31429819 -145544321 - AluJb SINE Alu -14 298 1 22101 161 50 16 chrX 31429819 31431764 -145542376 - L1 LINE L1 -2434 5131 3253 2181 131 0 3 chrX 31431764 31432077 -145542063 - AluSq SINE Alu -1 312 1 22101 161 50 16 chrX 31432077 31434828 -145539312 - L1 LINE L1 -4312 3253 32 812 167 35 14 chrX 31434835 31434979 -145539161 - AluJo SINE Alu -165 147 1 1485 231 44 41 chrX 31434980 31435439 -145538701 + L1M4 LINE L1 3483 3942 -2204 1238 213 37 4 chrX 31435450 31435694 -145538446 + L1M4 LINE L1 5 256 -6286 2833 144 16 94 chrX 31435816 31436425 -145537715 + L1MB5 LINE L1 5577 6138 -36 1228 249 32 41 chrX 31436476 31436515 -145537625 + L1M4 LINE L1 4428 4466 -2178 2214 99 3 0 chrX 31436515 31436828 -145537312 + AluSx SINE Alu 1 314 0 1228 249 32 41 chrX 31436828 31437129 -145537011 + L1M4 LINE L1 4466 4766 -1878 348 270 59 13 chrX 31437107 31437259 -145536881 + L1PA14 LINE L1 6165 6323 -336 * 1975 177 35 11 chrX 31437149 31437517 -145536623 + L1MD2 LINE L1 6214 6590 -267 224 303 189 51 chrX 31437617 31437792 -145536348 + L2 LINE L2 3114 3312 -1 21 0 0 0 chrX 31437903 31437924 -145536216 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 31438411 31438451 -145535689 + AT_rich Low_complexity Low_complexity 1 40 0 644 236 80 34 chrX 31438551 31438788 -145535352 - L1MC4 LINE L1 0 8042 7795 2254 94 0 3 chrX 31438848 31439145 -145534995 - AluSg SINE Alu -14 296 1 988 139 0 45 chrX 31439151 31439379 -145534761 - AluJb SINE Alu 0 312 1 1859 138 34 10 chrX 31439425 31439722 -145534418 - AluJo SINE Alu -8 304 1 1529 156 86 0 chrX 31439806 31440062 -145534078 + AluJb SINE Alu 2 279 -33 461 245 64 64 chrX 31440082 31440270 -145533870 - L1MC4 LINE L1 -384 7658 7471 1583 168 118 1 chrX 31440675 31441005 -145533135 - L1MB4 LINE L1 -1 6179 5813 2384 100 0 3 chrX 31441720 31442030 -145532110 - AluSx SINE Alu -3 309 1 2439 63 0 32 chrX 31442888 31443203 -145530937 - AluY SINE Alu -6 305 1 185 339 0 0 chrX 31443834 31443890 -145530250 + MIR SINE MIR 198 253 -9 2068 107 11 0 chrX 31444119 31444430 -145529710 + AluSx SINE Alu 1 314 0 1138 47 0 0 chrX 31444633 31444762 -145529378 - AluY SINE Alu -182 129 1 27 0 0 0 chrX 31445016 31445043 -145529097 + AT_rich Low_complexity Low_complexity 1 27 0 691 116 0 147 chrX 31445046 31445175 -145528965 + FLAM_C SINE Alu 2 111 -32 52 30 0 0 chrX 31445194 31445260 -145528880 + AT_rich Low_complexity Low_complexity 1 66 0 251 287 58 0 chrX 31445359 31445493 -145528647 - HAL1b LINE L1 -136 2371 840 1185 167 0 0 chrX 31445555 31445723 -145528417 - FAM SINE Alu -7 168 1 357 277 62 0 chrX 31445850 31445980 -145528160 + L1ME4a LINE L1 5984 6121 0 2294 93 3 10 chrX 31446124 31446424 -145527716 + AluSx SINE Alu 1 298 -14 2131 107 0 32 chrX 31446682 31446992 -145527148 - AluSx SINE Alu -11 301 2 299 258 0 0 chrX 31447019 31447085 -145527055 - LTR16A1 LTR ERVL -139 318 253 1787 204 68 19 chrX 31447085 31447511 -145526629 + MLT1D LTR MaLR 1 447 -58 25 0 0 0 chrX 31447519 31447544 -145526596 + AT_rich Low_complexity Low_complexity 1 25 0 884 208 115 67 chrX 31447544 31447813 -145526327 - AluJo SINE Alu -30 282 1 337 129 0 86 chrX 31447817 31447887 -145526253 + MLT1D LTR MaLR 440 503 -2 384 249 95 83 chrX 31447890 31447929 -145526211 - LTR16A1 LTR ERVL -201 256 219 2072 83 49 3 chrX 31447929 31448217 -145525923 - AluSg SINE Alu -8 302 2 384 249 95 83 chrX 31448217 31448430 -145525710 - LTR16A1 LTR ERVL -238 219 1 340 326 0 0 chrX 31448691 31448789 -145525351 + L1MDa LINE L1 2444 2541 -3999 2161 95 0 38 chrX 31448945 31449122 -145525018 - AluSx SINE Alu -7 305 144 2257 102 7 7 chrX 31449122 31449426 -145524714 - AluSx SINE Alu -8 304 1 2161 95 0 38 chrX 31449426 31449565 -145524575 - AluSx SINE Alu -168 144 1 1408 123 0 0 chrX 31449638 31449833 -145524307 - AluSg/x SINE Alu -8 302 108 354 107 4 0 chrX 31449835 31449891 -145524249 - Alu SINE Alu -256 44 1 517 264 68 26 chrX 31449891 31450207 -145523933 - HAL1 LINE L1 -756 1751 1391 2308 86 30 0 chrX 31450333 31450637 -145523503 + AluSp SINE Alu 1 313 0 2149 102 24 0 chrX 31451169 31451463 -145522677 - AluSx SINE Alu -11 301 1 2316 93 0 10 chrX 31451539 31451840 -145522300 - AluSc SINE Alu -11 298 1 248 222 39 33 chrX 31451840 31452595 -145521545 - L1MC4 LINE L1 -6 8036 7261 1637 174 0 83 chrX 31452665 31453004 -145521136 - AluJo SINE Alu -1 311 1 916 133 0 0 chrX 31453108 31453228 -145520912 - FLAM_C SINE Alu -12 121 2 310 250 0 0 chrX 31453266 31453334 -145520806 - L1MC5 LINE L1 -843 7118 7051 2468 78 3 0 chrX 31453435 31453744 -145520396 - AluSg SINE Alu 0 310 1 1303 253 26 10 chrX 31453744 31454026 -145520114 + L1M4 LINE L1 3455 3746 -2400 2503 84 3 0 chrX 31454026 31454337 -145519803 + AluSx SINE Alu 1 312 0 1303 253 26 10 chrX 31454337 31454445 -145519695 + L1M4 LINE L1 3746 3851 -2295 1870 189 3 6 chrX 31454445 31454757 -145519383 + AluJo SINE Alu 1 311 -1 2817 210 66 40 chrX 31454768 31455043 -145519097 + L1MA9 LINE L1 5509 5776 -536 180 77 0 0 chrX 31455043 31455069 -145519071 + (TA)n Simple_repeat Simple_repeat 1 26 0 2817 210 66 40 chrX 31455069 31455536 -145518604 + L1MA9 LINE L1 5776 6270 -42 1124 215 83 3 chrX 31455534 31455822 -145518318 + L1M4 LINE L1 3831 4141 -2005 * 968 271 74 17 chrX 31455819 31456442 -145517698 - L1MC/D LINE L1 -750 5396 4820 * 4292 135 39 17 chrX 31456595 31457291 -145516849 + MER50 LTR ERV1 1 711 -23 755 137 36 65 chrX 31457500 31457668 -145516472 - L1MB4 LINE L1 0 6180 6018 4025 182 84 30 chrX 31457679 31458489 -145515651 - MER21B LTR ERV1 0 904 3 1060 166 34 53 chrX 31458492 31458757 -145515383 - L1MB4 LINE L1 -158 6022 5763 306 73 0 0 chrX 31458791 31458832 -145515308 + (TA)n Simple_repeat Simple_repeat 2 42 0 2067 129 0 7 chrX 31458832 31459127 -145515013 - AluSx SINE Alu -19 293 1 2280 118 0 6 chrX 31459212 31459525 -145514615 + AluSq SINE Alu 1 311 -2 2426 68 0 0 chrX 31459691 31459985 -145514155 + AluY SINE Alu 1 294 -17 1654 121 83 7 chrX 31460098 31460387 -145513753 + AluSq SINE Alu 1 311 -2 2276 100 3 3 chrX 31460559 31460868 -145513272 - AluSc SINE Alu 0 309 1 325 132 0 19 chrX 31461041 31461094 -145513046 - Alu SINE Alu -7 293 242 2122 205 47 82 chrX 31461170 31461804 -145512336 + LTR9 LTR ERV1 1 612 0 1514 148 0 35 chrX 31461804 31462034 -145512106 - AluSx SINE Alu -90 222 1 2035 104 0 98 chrX 31462496 31462832 -145511308 + AluSx SINE Alu 3 305 -7 822 158 79 24 chrX 31462897 31463061 -145511079 + AluJo SINE Alu 127 299 -13 2399 75 0 7 chrX 31463295 31463601 -145510539 + AluY SINE Alu 7 310 -1 1846 132 14 7 chrX 31463616 31463925 -145510215 + AluSx SINE Alu 1 311 0 202 271 68 0 chrX 31464131 31464190 -145509950 + MIR3 SINE MIR 145 207 -1 1750 234 52 25 chrX 31464350 31464554 -145509586 - L1ME1 LINE L1 -289 5877 5680 2384 91 3 0 chrX 31464554 31464863 -145509277 - AluSx SINE Alu -2 310 1 1750 234 52 25 chrX 31464863 31465140 -145509000 - L1ME1 LINE L1 -486 5680 5383 2434 78 7 0 chrX 31465175 31465482 -145508658 + AluSg SINE Alu 1 309 -1 23 33 0 0 chrX 31465819 31465849 -145508291 + AT_rich Low_complexity Low_complexity 1 30 0 1845 169 0 22 chrX 31465931 31466250 -145507890 + AluJo SINE Alu 1 312 0 2228 93 3 3 chrX 31466317 31466606 -145507534 - AluSq SINE Alu -24 289 1 2274 85 3 57 chrX 31466750 31467081 -145507059 - AluSp SINE Alu 0 313 1 1912 143 14 4 chrX 31467100 31467405 -145506735 - AluSx SINE Alu 0 310 3 410 229 29 81 chrX 31467521 31467731 -145506409 - L1MC4 LINE L1 -1 8041 7843 2389 89 16 0 chrX 31467824 31468128 -145506012 + AluSx SINE Alu 1 309 -3 4629 149 15 42 chrX 31468129 31468978 -145505162 + L1PB4 LINE L1 4624 5494 -662 2576 68 0 3 chrX 31468978 31469288 -145504852 - AluSc SINE Alu 0 309 1 4629 149 15 42 chrX 31469288 31469634 -145504506 + L1PB4 LINE L1 5494 5789 -367 1804 154 0 55 chrX 31469634 31469959 -145504181 + AluJo SINE Alu 1 307 -5 4629 149 15 42 chrX 31469959 31470224 -145503916 + L1PB4 LINE L1 5789 6060 -96 1861 114 114 0 chrX 31470245 31470518 -145503622 + AluSx SINE Alu 1 304 -8 216 292 14 0 chrX 31470889 31470961 -145503179 + T-rich Low_complexity Low_complexity 3 180 0 2554 68 0 6 chrX 31470961 31471273 -145502867 - AluY SINE Alu 0 382 1 2387 91 0 7 chrX 31471274 31471583 -145502557 - AluSx SINE Alu -5 307 1 574 83 31 31 chrX 31471871 31471967 -145502173 + AluSp/q SINE Alu 212 307 -6 576 200 33 33 chrX 31472349 31472499 -145501641 - L1ME3 LINE L1 -1 6161 6012 2442 89 0 0 chrX 31472594 31472896 -145501244 + AluSx SINE Alu 1 302 -10 975 247 69 0 chrX 31473575 31473806 -145500334 - MER69 DNA AcHobo -979 247 1 1100 172 0 0 chrX 31473997 31474166 -145499974 - FRAM SINE Alu -3 173 5 1841 127 3 103 chrX 31474265 31474402 -145499738 + AluSp SINE Alu 1 150 -163 2274 98 0 7 chrX 31474402 31474697 -145499443 + AluSq SINE Alu 1 293 -20 1841 127 3 103 chrX 31474697 31474898 -145499242 + AluSp SINE Alu 150 305 -8 1357 178 4 13 chrX 31475504 31475729 -145498411 + MER58A DNA MER1_type 2 224 0 2221 100 10 0 chrX 31476003 31476292 -145497848 - AluSp SINE Alu -21 292 1 2067 118 3 3 chrX 31476400 31476689 -145497451 - AluSx SINE Alu -23 289 1 200 239 0 0 chrX 31476966 31477012 -145497128 - MER5B DNA MER1_type 0 178 133 466 205 43 5 chrX 31477014 31477039 -145497101 + CT-rich Low_complexity Low_complexity 1 24 -506 2349 98 0 3 chrX 31477039 31477336 -145496804 - AluSg1 SINE Alu -13 296 1 466 205 43 5 chrX 31477336 31477525 -145496615 + CT-rich Low_complexity Low_complexity 24 530 0 1062 114 6 12 chrX 31477525 31477691 -145496449 - L1MB7 LINE L1 -16 6168 6004 700 200 14 7 chrX 31477691 31477831 -145496309 - MER5B DNA MER1_type -37 141 1 1322 106 0 41 chrX 31478226 31478444 -145495696 - L1MA5A LINE L1 0 6297 6089 2228 123 0 0 chrX 31478565 31478865 -145495275 - AluSx SINE Alu -12 300 1 372 71 0 0 chrX 31478998 31479054 -145495086 + (GA)n Simple_repeat Simple_repeat 1 56 0 25 0 0 28 chrX 31479200 31479215 -145494925 + AT_rich Low_complexity Low_complexity 1 15 -20 324 0 0 0 chrX 31479215 31479251 -145494889 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 28 chrX 31479251 31479271 -145494869 + AT_rich Low_complexity Low_complexity 15 35 0 1624 111 0 5 chrX 31479271 31479487 -145494653 - AluSq SINE Alu -98 215 1 507 101 0 13 chrX 31479488 31479567 -145494573 - LTR49 LTR ERV1 -517 78 1 4317 124 11 0 chrX 31479576 31480195 -145493945 + MER41B LTR ERV1 10 635 0 245 56 83 0 chrX 31480195 31480231 -145493909 + LTR40a LTR ERVL 479 517 -2 5035 87 11 31 chrX 31481126 31481668 -145492472 + LTR8 LTR ERV1 1 527 -164 2346 92 3 10 chrX 31481668 31481972 -145492168 + AluSx SINE Alu 2 303 -9 5035 87 11 31 chrX 31481972 31482134 -145492006 + LTR8 LTR ERV1 527 691 0 783 260 72 3 chrX 31482624 31482929 -145491211 + L2 LINE L2 2755 3074 -239 2118 85 38 72 chrX 31482929 31483051 -145491089 + AluSp SINE Alu 1 126 -187 3388 44 7 0 chrX 31483051 31483464 -145490676 + L1PA6 LINE L1 5739 6154 0 2118 85 38 72 chrX 31483464 31483659 -145490481 + AluSp SINE Alu 126 307 -6 742 267 39 17 chrX 31483673 31483905 -145490235 + L2 LINE L2 3077 3313 0 398 248 93 0 chrX 31484108 31484237 -145489903 + MIR3 SINE MIR 30 170 -38 1314 232 80 32 chrX 31484361 31484762 -145489378 + LTR38 LTR ERV1 137 556 0 1936 82 96 28 chrX 31486396 31486678 -145487462 - AluSq SINE Alu -12 301 1 1132 287 47 13 chrX 31487184 31487817 -145486323 - L1MC/D LINE L1 -413 5757 5086 2468 97 3 0 chrX 31488342 31488652 -145485488 - AluSp SINE Alu -2 311 1 183 80 0 0 chrX 31489323 31489348 -145484792 + (A)n Simple_repeat Simple_repeat 1 25 0 3038 210 9 25 chrX 31489444 31490078 -145484062 - MLT1E3 LTR MaLR 0 624 1 421 254 89 52 chrX 31490133 31490346 -145483794 - L1MC5 LINE L1 -45 7916 7696 1082 235 82 132 chrX 31490346 31491029 -145483111 - MER77 LTR ERV1 -6 599 21 639 233 68 23 chrX 31491063 31491329 -145482811 - L1MC5 LINE L1 -273 7688 7411 2121 126 0 3 chrX 31491610 31491912 -145482228 - AluY SINE Alu -10 301 1 25 0 0 50 chrX 31492914 31492936 -145481204 + AT_rich Low_complexity Low_complexity 1 23 -15 270 0 0 0 chrX 31492936 31492966 -145481174 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2166 126 0 0 chrX 31492966 31493251 -145480889 - AluSx SINE Alu -27 285 1 25 0 0 50 chrX 31493251 31493267 -145480873 + AT_rich Low_complexity Low_complexity 21 38 0 1934 133 22 35 chrX 31493277 31493623 -145480517 - AluJb SINE Alu 0 342 1 2089 153 72 25 chrX 31494460 31494865 -145479275 + MSTA LTR MaLR 5 428 0 1144 169 14 10 chrX 31494869 31495076 -145479064 - MLT1A1 LTR MaLR -2 363 156 1004 105 12 0 chrX 31495083 31495183 -145478957 + (TTCC)n Simple_repeat Simple_repeat 4 108 -59 2031 130 0 52 chrX 31495183 31495507 -145478633 - AluSx SINE Alu -1 311 5 1004 105 12 0 chrX 31495507 31495568 -145478572 + (TTCC)n Simple_repeat Simple_repeat 108 167 0 183 156 0 0 chrX 31495566 31495598 -145478542 + CT-rich Low_complexity Low_complexity 2 33 0 * 781 188 0 0 chrX 31495608 31495741 -145478399 - FLAM_A SINE Alu 0 133 1 1101 101 0 36 chrX 31495741 31495900 -145478240 - MLT1A1 LTR MaLR -210 155 1 1695 97 9 0 chrX 31495922 31496149 -145477991 + MER30 DNA MER1_type 2 230 0 2059 139 0 16 chrX 31497836 31498139 -145476001 - AluJo SINE Alu -14 298 1 1011 161 0 0 chrX 31498356 31498536 -145475604 + (TA)n Simple_repeat Simple_repeat 1 180 0 5898 138 44 5 chrX 31498948 31499922 -145474218 + L1MC1 LINE L1 5316 6327 -6 1960 146 3 13 chrX 31499929 31500230 -145473910 - AluJo SINE Alu -14 298 1 1985 85 0 120 chrX 31500565 31500906 -145473234 - AluSg SINE Alu 0 300 1 3727 93 16 84 chrX 31500914 31501346 -145472794 - L1PA16 LINE L1 0 6166 5791 2100 125 7 3 chrX 31501346 31501649 -145472491 - AluSx SINE Alu -8 304 1 3727 93 16 84 chrX 31501649 31501862 -145472278 - L1PA16 LINE L1 -375 5791 5565 248 273 93 29 chrX 31502956 31503095 -145471045 - MLT2E LTR ERVL -6 622 475 240 290 0 14 chrX 31503435 31503504 -145470636 + MIR3 SINE MIR 138 205 -3 2410 86 0 3 chrX 31503636 31503938 -145470202 - AluSx SINE Alu -11 301 1 2193 90 0 21 chrX 31504611 31504925 -145469215 + AluSx SINE Alu 1 308 0 1554 143 101 8 chrX 31505043 31505301 -145468839 + AluJb SINE Alu 1 282 -30 1133 266 119 29 chrX 31505837 31506258 -145467882 + MLT1H1 LTR MaLR 1 459 -96 335 184 133 20 chrX 31506266 31506364 -145467776 - MER103 DNA DNA -13 153 45 392 118 15 0 chrX 31506808 31506876 -145467264 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1579 170 30 104 chrX 31506914 31507308 -145466832 + MLT1A1 LTR MaLR 1 365 0 329 42 0 21 chrX 31507441 31507450 -145466690 + (TG)n Simple_repeat Simple_repeat 1 55 0 329 42 0 21 chrX 31507450 31507498 -145466642 + (TG)n Simple_repeat Simple_repeat 2 48 0 1022 242 99 68 chrX 31507560 31507639 -145466501 - L1MC4a LINE L1 -1893 5915 5840 1846 137 10 40 chrX 31507639 31507938 -145466202 - AluJo SINE Alu -10 302 13 1022 242 99 68 chrX 31507938 31508136 -145466004 - L1MC4a LINE L1 -1968 5840 5620 1614 254 33 35 chrX 31508136 31508592 -145465548 + LTR16A1 LTR ERVL 3 457 0 1022 242 99 68 chrX 31508592 31508697 -145465443 - L1MC4a LINE L1 -2188 5620 5520 673 242 67 6 chrX 31508745 31508910 -145465230 + FAM SINE Alu 1 175 0 420 252 133 26 chrX 31509361 31509512 -145464628 + MIR SINE MIR 28 194 -68 2317 114 3 0 chrX 31509848 31510154 -145463986 + AluSx SINE Alu 1 307 -5 250 286 41 0 chrX 31510261 31510359 -145463781 + L3b LINE CR1 1282 1383 -200 210 329 71 0 chrX 31511045 31511115 -145463025 - MER91C DNA MER1_type -35 105 31 565 278 54 10 chrX 31511629 31511834 -145462306 - MIR SINE MIR -3 259 46 193 289 78 70 chrX 31512039 31512181 -145461959 - L2 LINE L2 -11 3302 3160 1178 208 78 20 chrX 31512336 31512832 -145461308 - MLT1G1 LTR MaLR -12 543 1 364 281 62 8 chrX 31513071 31513199 -145460941 + MIR SINE MIR 16 150 -112 1330 241 74 43 chrX 31513672 31514091 -145460049 - LTR16A1 LTR ERVL -17 440 9 299 96 19 0 chrX 31514350 31514402 -145459738 + (GA)n Simple_repeat Simple_repeat 1 53 0 361 100 83 0 chrX 31515374 31515434 -145458706 - MLT1A1 LTR MaLR -11 354 290 2547 54 0 0 chrX 31515572 31515869 -145458271 - AluY SINE Alu -14 297 1 1456 187 17 27 chrX 31515904 31516204 -145457936 - MLT1A1 LTR MaLR -68 297 1 1469 191 169 27 chrX 31516684 31517093 -145457047 + MLT1C LTR MaLR 1 467 0 216 97 0 0 chrX 31517406 31517437 -145456703 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 828 167 0 0 chrX 31517485 31517623 -145456517 + FRAM SINE Alu 38 175 -1 184 286 82 51 chrX 31518142 31518240 -145455900 - MIR SINE MIR -47 215 115 246 286 46 81 chrX 31518265 31518422 -145455718 + MIR SINE MIR 31 181 -62 2261 92 0 0 chrX 31518442 31518754 -145455386 - AluSg SINE Alu 0 312 1 1499 177 0 78 chrX 31518809 31519142 -145454998 - AluJb SINE Alu -5 307 1 2919 10 0 0 chrX 31519303 31519614 -145454526 + AluY SINE Alu 1 311 0 187 296 0 57 chrX 31519641 31519729 -145454411 - MIR SINE MIR -160 102 20 373 308 0 0 chrX 31520395 31520486 -145453654 + MLT1K LTR MaLR 140 230 -358 180 0 0 0 chrX 31520490 31520510 -145453630 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2705 43 0 0 chrX 31520602 31520904 -145453236 - AluY SINE Alu -9 302 1 2404 90 0 6 chrX 31521451 31521762 -145452378 - AluSg SINE Alu -1 309 1 1503 181 0 75 chrX 31521817 31522149 -145451991 - AluJb SINE Alu -5 307 1 212 296 0 57 chrX 31522322 31522410 -145451730 - MIR SINE MIR -160 102 20 369 308 0 0 chrX 31523076 31523167 -145450973 + MLT1K LTR MaLR 140 230 -358 180 0 0 0 chrX 31523171 31523191 -145450949 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2704 40 0 0 chrX 31523283 31523586 -145450554 - AluY SINE Alu -8 303 1 2407 93 0 6 chrX 31524133 31524446 -145449694 - AluSx SINE Alu -1 311 1 898 101 13 13 chrX 31525214 31525363 -145448777 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 270 116 0 0 chrX 31525363 31525406 -145448734 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 * 407 104 0 15 chrX 31525400 31525467 -145448673 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 396 250 44 0 chrX 31525682 31525796 -145448344 - L1MC4a LINE L1 -181 5940 5820 208 69 0 0 chrX 31525797 31525826 -145448314 - L2 LINE L2 -3 3310 3282 417 263 39 36 chrX 31525845 31526040 -145448100 + MLT1H LTR MaLR 20 244 -241 258 223 22 54 chrX 31526100 31526231 -145447909 + MLT1H LTR MaLR 416 533 -16 317 260 195 0 chrX 31526258 31526335 -145447805 - L2 LINE L2 -27 3286 3195 2476 129 26 11 chrX 31526336 31526715 -145447425 - MSTB LTR MaLR 0 426 42 2330 119 19 28 chrX 31526746 31527106 -145447034 - THE1B LTR MaLR 0 364 8 1976 119 4 4 chrX 31527106 31527384 -145446756 - AluJb SINE Alu -33 279 2 369 60 40 0 chrX 31527385 31527435 -145446705 - MSTB LTR MaLR -374 52 1 760 284 136 30 chrX 31527898 31528236 -145445904 + LTR16A LTR ERVL 16 389 -61 2201 108 3 3 chrX 31528351 31528647 -145445493 - AluSp SINE Alu -17 296 1 2399 101 7 0 chrX 31528658 31528966 -145445174 - AluSg SINE Alu 0 310 1 451 242 242 6 chrX 31529026 31529208 -145444932 + MIR SINE MIR 20 244 -18 191 324 88 59 chrX 31529237 31529349 -145444791 + L2 LINE L2 3089 3209 -63 6330 112 35 0 chrX 31529349 31530610 -145443530 - L1PA13 LINE L1 -11 6152 4865 191 324 88 59 chrX 31530610 31530667 -145443473 + L2 LINE L2 3209 3263 -9 1299 117 8 76 chrX 31530669 31530753 -145443387 + L1MA5 LINE L1 6064 6152 -148 2091 128 0 22 chrX 31530753 31531066 -145443074 - AluSx SINE Alu -6 306 1 1299 117 8 76 chrX 31531066 31531230 -145442910 + L1MA5 LINE L1 6152 6295 -5 2380 98 0 6 chrX 31531634 31531949 -145442191 + AluSq SINE Alu 1 313 0 29 0 0 0 chrX 31532300 31532329 -145441811 + AT_rich Low_complexity Low_complexity 1 29 0 838 165 0 0 chrX 31532330 31532457 -145441683 - FLAM_C SINE Alu -16 127 1 1568 295 44 0 chrX 31532488 31532919 -145441221 - LTR16A LTR ERVL 0 450 1 293 348 143 38 chrX 31532935 31532990 -145441150 + L2 LINE L2 2829 2877 -395 2533 70 3 0 chrX 31532990 31533292 -145440848 - AluSp SINE Alu -10 303 1 2205 120 0 0 chrX 31533292 31533591 -145440549 - AluSx SINE Alu -13 299 1 293 348 143 38 chrX 31533591 31533934 -145440206 + L2 LINE L2 2876 3270 -2 337 252 0 63 chrX 31534654 31534765 -145439375 - MLT1K LTR MaLR -15 573 470 1460 237 76 48 chrX 31534913 31535117 -145439023 - L2 LINE L2 -4 3309 3112 2219 124 0 6 chrX 31535117 31535431 -145438709 + AluJb SINE Alu 1 312 0 1460 237 76 48 chrX 31535431 31535961 -145438179 - L2 LINE L2 -201 3112 2568 2200 96 3 0 chrX 31537357 31537649 -145436491 - AluSp SINE Alu -6 307 15 693 265 30 6 chrX 31537751 31537917 -145436223 - MER97c DNA MER1_type? -911 179 10 568 219 0 16 chrX 31537954 31538077 -145436063 + L2 LINE L2 3193 3313 0 238 277 24 0 chrX 31538558 31538641 -145435499 - L1ME3A LINE L1 -233 5937 5853 475 252 36 0 chrX 31538656 31538767 -145435373 - MER91C DNA MER1_type -15 125 11 960 284 88 18 chrX 31538772 31539266 -145434874 + MLT1H1 LTR MaLR 1 492 -63 526 218 200 53 chrX 31539264 31539434 -145434706 - LTR16A LTR ERVL -187 263 69 * 1384 144 0 9 chrX 31539434 31539656 -145434484 - L1 LINE L1 -1894 4252 4033 236 197 82 0 chrX 31539635 31539696 -145434444 - L1ME3A LINE L1 -361 5803 5738 * 12354 51 3 0 chrX 31539720 31541265 -145432875 + L1P LINE L1 1904 3453 -2693 387 291 60 42 chrX 31541372 31541657 -145432483 - L1M4 LINE L1 -1262 4884 4595 1680 224 113 13 chrX 31541749 31542208 -145431932 + MLT1D LTR MaLR 1 505 0 2245 263 51 10 chrX 31542671 31543371 -145430769 - HAL1 LINE L1 -625 1882 1154 1065 304 89 23 chrX 31543388 31544218 -145429922 - L1M4 LINE L1 -1979 4167 3140 1603 185 34 14 chrX 31544218 31544515 -145429625 - AluJo SINE Alu -9 303 1 1065 304 89 23 chrX 31544515 31544616 -145429524 - L1M4 LINE L1 -3006 3140 3047 2166 182 32 11 chrX 31544641 31545211 -145428929 - L1MD2 LINE L1 -13 6346 5716 348 270 59 13 chrX 31545101 31545253 -145428887 - L1PA14 LINE L1 -336 5825 5667 * 1228 249 32 41 chrX 31545231 31545532 -145428608 - L1M4 LINE L1 -1878 4766 4466 2213 99 3 0 chrX 31545532 31545845 -145428295 - AluSx SINE Alu 0 314 1 1228 249 32 41 chrX 31545845 31545884 -145428256 - L1M4 LINE L1 -2178 4466 4428 2833 144 16 94 chrX 31545935 31546544 -145427596 - L1MB5 LINE L1 -36 6138 5577 1238 213 37 4 chrX 31546666 31546910 -145427230 - L1M4 LINE L1 -6286 256 5 1485 231 44 41 chrX 31546921 31547380 -145426760 - L1M4 LINE L1 -2204 4440 3981 812 167 35 14 chrX 31547381 31547525 -145426615 + AluJo SINE Alu 1 147 -165 22101 183 74 17 chrX 31547532 31550283 -145423857 + L1M1 LINE L1 32 2624 -4941 2181 131 0 3 chrX 31550283 31550596 -145423544 + AluSq SINE Alu 1 312 -1 22101 183 74 17 chrX 31550596 31552541 -145421599 + L1M1 LINE L1 2624 4456 -3109 1922 140 49 7 chrX 31552541 31552827 -145421313 + AluJb SINE Alu 1 298 -14 22101 183 74 17 chrX 31552827 31554113 -145420027 + L1M1 LINE L1 4456 6372 -1193 875 155 14 20 chrX 31554113 31554261 -145419879 - AluJo SINE Alu -162 150 4 796 125 100 0 chrX 31554493 31554613 -145419527 - MER20 DNA MER1_type 0 219 88 2845 196 39 11 chrX 31554630 31555273 -145418867 - L1MDa LINE L1 -4143 2397 1737 1286 222 10 7 chrX 31555249 31555546 -145418594 - L1M4 LINE L1 -1327 5213 4916 * 251 291 35 0 chrX 31605601 31605687 -145368453 + HAL1b LINE L1 840 928 -420 52 30 0 0 chrX 31605834 31605900 -145368240 + AT_rich Low_complexity Low_complexity 1 66 0 691 116 0 147 chrX 31605919 31606048 -145368092 - FLAM_C SINE Alu -32 111 2 27 0 0 0 chrX 31606051 31606078 -145368062 + AT_rich Low_complexity Low_complexity 1 27 0 1076 62 0 0 chrX 31606332 31606461 -145367679 + AluY SINE Alu 1 129 -182 2078 106 11 0 chrX 31606661 31606973 -145367167 - AluSx SINE Alu 0 315 1 185 339 0 0 chrX 31607202 31607258 -145366882 - MIR SINE MIR -9 253 198 2437 58 0 32 chrX 31607888 31608200 -145365940 + AluY SINE Alu 1 302 -9 2390 97 0 3 chrX 31609058 31609367 -145364773 + AluSx SINE Alu 1 308 -4 1583 168 118 1 chrX 31610082 31610412 -145363728 + L1MB4 LINE L1 5813 6179 -1 461 245 64 64 chrX 31610817 31611005 -145363135 + L1MC4 LINE L1 7471 7658 -384 1559 152 86 0 chrX 31611025 31611281 -145362859 - AluJo SINE Alu -33 279 2 1859 138 34 10 chrX 31611365 31611662 -145362478 + AluJo SINE Alu 1 304 -8 961 144 0 45 chrX 31611708 31611936 -145362204 + AluJb SINE Alu 1 312 0 2254 94 0 3 chrX 31611941 31612238 -145361902 + AluSg SINE Alu 1 296 -14 644 236 80 34 chrX 31612298 31612535 -145361605 + L1MC4 LINE L1 7795 8042 0 26 50 0 0 chrX 31612635 31612675 -145361465 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chrX 31613162 31613183 -145360957 + AT_rich Low_complexity Low_complexity 1 21 0 224 303 189 51 chrX 31613294 31613469 -145360671 - L2 LINE L2 -1 3312 3114 22 70 0 0 chrX 31613566 31613609 -145360531 + AT_rich Low_complexity Low_complexity 1 43 0 2522 53 3 0 chrX 31614486 31614786 -145359354 - AluY SINE Alu -9 302 2 802 133 26 0 chrX 31615654 31615767 -145358373 - FLAM_C SINE Alu -16 117 2 30 0 0 0 chrX 31616083 31616113 -145358027 + AT_rich Low_complexity Low_complexity 1 30 0 2123 122 0 0 chrX 31616116 31616402 -145357738 + AluSx SINE Alu 1 286 -26 1636 139 14 48 chrX 31616426 31616742 -145357398 + AluSx SINE Alu 1 306 0 1855 156 7 3 chrX 31616752 31617041 -145357099 + AluJo SINE Alu 1 290 -22 535 114 0 49 chrX 31617041 31617164 -145356976 + (CA)n Simple_repeat Simple_repeat 1 117 0 602 238 7 66 chrX 31617193 31617344 -145356796 - HAL1 LINE L1 -1708 799 658 669 185 39 135 chrX 31617347 31617558 -145356582 + HAL1 LINE L1 772 955 -1552 351 0 0 0 chrX 31617558 31617597 -145356543 + (CA)n Simple_repeat Simple_repeat 2 40 0 669 185 39 135 chrX 31617597 31617644 -145356496 + HAL1 LINE L1 955 1005 -1502 970 110 144 0 chrX 31617644 31617817 -145356323 + L1MC3 LINE L1 6901 7098 -687 337 217 33 11 chrX 31617818 31617905 -145356235 + MLT1F1 LTR MaLR 37 126 -437 2071 130 7 3 chrX 31617905 31618206 -145355934 + AluSx SINE Alu 1 302 -10 209 176 0 20 chrX 31618313 31618350 -145355790 + (TA)n Simple_repeat Simple_repeat 2 39 -12 2301 92 3 0 chrX 31618350 31618644 -145355496 - AluSq SINE Alu -18 295 1 209 176 0 20 chrX 31618644 31618657 -145355483 + (TA)n Simple_repeat Simple_repeat 39 51 0 2561 68 3 0 chrX 31619140 31619450 -145354690 + AluY SINE Alu 1 311 0 2064 123 6 25 chrX 31619574 31619892 -145354248 + AluJb SINE Alu 1 312 0 286 180 33 0 chrX 31619898 31619959 -145354181 + HAL1 LINE L1 1120 1182 -1325 734 132 116 47 chrX 31620007 31620136 -145354004 + AluJo SINE Alu 2 139 -173 2018 227 144 79 chrX 31620142 31620657 -145353483 + HAL1 LINE L1 1167 1647 -860 1884 139 17 3 chrX 31620657 31620958 -145353182 + AluJo SINE Alu 1 305 -7 2018 227 144 79 chrX 31620958 31621178 -145352962 + HAL1 LINE L1 1647 1851 -656 2367 89 0 10 chrX 31621178 31621492 -145352648 + AluY SINE Alu 1 311 0 2467 86 0 3 chrX 31621496 31621809 -145352331 + AluSq SINE Alu 1 312 -1 2194 92 0 48 chrX 31621816 31622130 -145352010 + AluSg SINE Alu 1 299 -11 2018 227 144 79 chrX 31622130 31622639 -145351501 + HAL1 LINE L1 1858 2507 0 2093 106 3 11 chrX 31623767 31624074 -145350066 - AluSq SINE Alu 0 307 3 241 236 189 31 chrX 31624523 31624650 -145349490 + L1MC5 LINE L1 7754 7900 -61 1304 154 36 22 chrX 31625087 31625464 -145348676 + MLT1C LTR MaLR 6 380 -48 2186 107 3 0 chrX 31625469 31625759 -145348381 - AluSx SINE Alu -21 291 1 317 24 24 0 chrX 31626198 31626240 -145347900 + (TG)n Simple_repeat Simple_repeat 2 44 0 2009 162 41 62 chrX 31629032 31629416 -145344724 + MER31B LTR ERV1 1 375 -91 1777 157 3 7 chrX 31629416 31629709 -145344431 - AluJo SINE Alu -20 292 1 2009 162 41 62 chrX 31629709 31629792 -145344348 + MER31B LTR ERV1 375 458 -8 2264 91 3 26 chrX 31630100 31630408 -145343732 - AluSx SINE Alu -11 301 1 284 68 45 0 chrX 31630754 31630798 -145343342 + MADE1 DNA Mariner 35 80 0 4759 66 3 0 chrX 31631152 31631741 -145342399 - LTR10C LTR ERV1 0 591 1 2243 92 0 3 chrX 31631823 31632106 -145342034 + AluSp SINE Alu 1 282 -31 180 0 0 0 chrX 31632110 31632130 -145342010 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2184 94 0 17 chrX 31632135 31632445 -145341695 + AluSx SINE Alu 1 305 0 4583 116 35 70 chrX 31632888 31633129 -145341011 - MER4E LTR ERV1 0 779 531 1624 116 0 0 chrX 31633129 31633344 -145340796 + AluSg/x SINE Alu 90 304 -6 4583 116 35 70 chrX 31633344 31633910 -145340230 - MER4E LTR ERV1 -248 531 1 1359 129 174 34 chrX 31633945 31634082 -145340058 + AluJb SINE Alu 2 118 -184 1996 142 0 3 chrX 31634082 31634384 -145339756 + AluSx SINE Alu 1 301 -11 1359 129 174 34 chrX 31634384 31634510 -145339630 + AluJb SINE Alu 118 302 0 213 237 0 17 chrX 31634856 31634915 -145339225 + A-rich Low_complexity Low_complexity 3 60 0 5178 75 7 24 chrX 31634961 31635114 -145339026 + LTR8 LTR ERV1 1 155 -536 2005 110 3 38 chrX 31635114 31635439 -145338701 + AluSx SINE Alu 1 315 0 5178 75 7 24 chrX 31635439 31635821 -145338319 + LTR8 LTR ERV1 155 525 -166 2285 101 7 0 chrX 31635821 31636129 -145338011 + AluSq SINE Alu 1 310 -3 5178 75 7 24 chrX 31636129 31636294 -145337846 + LTR8 LTR ERV1 525 691 0 1844 162 3 3 chrX 31636444 31636741 -145337399 + AluJo SINE Alu 6 302 -10 2154 130 198 7 chrX 31636756 31636963 -145337177 + LTR54 LTR ERV1 6 172 -338 2355 98 7 0 chrX 31636963 31637270 -145336870 - AluSx SINE Alu -1 311 3 2154 130 198 7 chrX 31637270 31637486 -145336654 + LTR54 LTR ERV1 172 510 0 1985 119 7 10 chrX 31637868 31638024 -145336116 - AluSx SINE Alu -19 293 137 2620 44 0 0 chrX 31638024 31638321 -145335819 - AluY SINE Alu -14 297 1 1985 119 7 10 chrX 31638321 31638458 -145335682 - AluSx SINE Alu -175 137 1 683 253 95 5 chrX 31639008 31639198 -145334942 - MER58C DNA MER1_type -8 207 1 393 103 0 0 chrX 31639198 31639256 -145334884 - MER4E LTR ERV1 0 779 722 398 76 136 0 chrX 31639258 31639324 -145334816 - MER4A LTR ERV1 -589 75 1 3949 121 72 32 chrX 31639325 31640005 -145334135 - MER4D LTR ERV1 -196 707 1 1706 158 13 26 chrX 31640218 31640522 -145333618 - AluJb SINE Alu -12 300 1 2292 96 10 0 chrX 31640695 31640987 -145333153 + AluSg SINE Alu 1 295 -15 3902 171 30 10 chrX 31641031 31641310 -145332830 + MER72 LTR ERV1 5 277 -445 2301 110 7 0 chrX 31641310 31641609 -145332531 + AluSq SINE Alu 1 301 -12 3902 171 30 10 chrX 31641609 31642033 -145332107 + MER72 LTR ERV1 277 722 0 312 269 0 32 chrX 31642158 31642251 -145331889 - L2 LINE L2 0 3313 3224 2215 184 23 113 chrX 31642275 31642632 -145331508 - MLT2B3 LTR ERVL 0 554 273 2163 131 0 13 chrX 31642632 31642938 -145331202 + AluSx SINE Alu 1 302 -10 2215 184 23 113 chrX 31642938 31643189 -145330951 - MLT2B3 LTR ERVL -281 273 1 2029 125 3 17 chrX 31643391 31643708 -145330432 - AluSx SINE Alu 0 312 1 2274 106 0 6 chrX 31643723 31644035 -145330105 - AluSg SINE Alu 0 310 1 1151 82 0 0 chrX 31644035 31644170 -145329970 - AluSq/x SINE Alu -177 135 1 1438 190 0 16 chrX 31644196 31644449 -145329691 - MER72 LTR ERV1 -469 253 5 884 136 157 0 chrX 31644493 31644640 -145329500 - AluSg/x SINE Alu -6 304 135 1466 142 59 139 chrX 31644767 31645121 -145329019 + MLT1B LTR MaLR 1 318 -72 1934 131 11 3 chrX 31645121 31645443 -145328697 - AluSx SINE Alu 0 324 1 1466 142 59 139 chrX 31645443 31645511 -145328629 + MLT1B LTR MaLR 318 390 0 2307 92 0 0 chrX 31645914 31646233 -145327907 - AluSx SINE Alu 0 319 1 2143 87 3 14 chrX 31646484 31646797 -145327343 + AluSx SINE Alu 1 310 0 226 344 106 19 chrX 31646803 31646963 -145327177 + L1ME LINE L1 5481 5654 -467 857 137 0 0 chrX 31646965 31647089 -145327051 + FLAM_C SINE Alu 3 126 -7 249 57 0 0 chrX 31647096 31647131 -145327009 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2281 112 3 0 chrX 31647153 31647465 -145326675 + AluSq SINE Alu 1 313 0 919 146 44 0 chrX 31647496 31647654 -145326486 + L1PA16 LINE L1 6000 6164 -2 26 0 0 0 chrX 31647667 31647693 -145326447 + AT_rich Low_complexity Low_complexity 1 26 0 2299 99 3 0 chrX 31647893 31648195 -145325945 + AluSx SINE Alu 1 303 -9 1907 153 0 0 chrX 31648266 31648571 -145325569 - AluJo SINE Alu 0 305 1 398 332 42 53 chrX 31648741 31649102 -145325038 + L1MC4a LINE L1 4675 5031 -1115 2136 103 0 42 chrX 31649103 31649415 -145324725 + AluY SINE Alu 2 300 -11 1398 95 0 0 chrX 31649415 31649587 -145324553 + AluSg/x SINE Alu 134 308 -4 2208 106 30 3 chrX 31649587 31649888 -145324252 + AluSg1 SINE Alu 1 309 0 435 241 117 28 chrX 31649978 31650307 -145323833 + L1MC4a LINE L1 5127 5491 -743 668 218 12 24 chrX 31650339 31650504 -145323636 + L1MC4a LINE L1 5687 5849 -1959 485 122 0 3 chrX 31650559 31650791 -145323349 + AluSx SINE Alu 1 298 -12 22 0 0 0 chrX 31650848 31650870 -145323270 + AT_rich Low_complexity Low_complexity 1 22 0 732 169 39 8 chrX 31650870 31651000 -145323140 - AluSq/x SINE Alu -177 135 2 2502 67 0 7 chrX 31651008 31651306 -145322834 - AluSc SINE Alu -13 296 1 2732 26 3 0 chrX 31651317 31651623 -145322517 - AluY SINE Alu -4 307 1 401 71 95 71 chrX 31651625 31651709 -145322431 - L1MB8 LINE L1 0 6178 6093 2500 146 46 72 chrX 31651728 31652086 -145322054 - L1MB4 LINE L1 -6 6174 5833 1724 128 4 0 chrX 31652086 31652335 -145321805 - AluSx SINE Alu -62 250 1 2500 146 46 72 chrX 31652335 31652502 -145321638 - L1MB4 LINE L1 -347 5833 5663 1852 105 79 0 chrX 31652592 31652858 -145321282 + AluSq SINE Alu 3 289 -24 2626 47 0 0 chrX 31653622 31653921 -145320219 + AluY SINE Alu 1 299 -12 2232 111 3 0 chrX 31654508 31654806 -145319334 + AluSx SINE Alu 1 299 -13 800 159 0 8 chrX 31654840 31654966 -145319174 - FLAM_C SINE Alu -8 125 1 2170 129 0 0 chrX 31655383 31655685 -145318455 + AluSx SINE Alu 1 302 -10 2248 99 13 3 chrX 31655704 31656007 -145318133 + AluSx SINE Alu 1 306 -6 2088 102 21 11 chrX 31657473 31657756 -145316384 + AluSg SINE Alu 5 290 -20 2189 128 0 0 chrX 31657872 31658170 -145315970 + AluSg SINE Alu 1 298 -12 269 130 22 0 chrX 31658196 31658242 -145315898 - MER41A LTR ERV1 0 554 508 1356 206 137 49 chrX 31658262 31658751 -145315389 - LTR10B LTR ERV1 -3 544 13 934 107 43 0 chrX 31658769 31658909 -145315231 - MER41B LTR ERV1 -43 592 447 1165 90 0 0 chrX 31658909 31659064 -145315076 - AluSg/x SINE Alu 0 310 156 2071 101 25 11 chrX 31659068 31659354 -145314786 - AluSx SINE Alu -22 290 1 2091 89 0 24 chrX 31659354 31659647 -145314493 - MER41A LTR ERV1 -185 369 84 627 180 0 9 chrX 31659647 31659758 -145314382 - AluJ SINE Alu -68 244 135 815 87 36 80 chrX 31659758 31659896 -145314244 - AluJ SINE Alu -170 132 1 414 244 272 22 chrX 31659900 31660080 -145314060 + MIR SINE MIR 21 245 -17 2242 109 3 0 chrX 31660083 31660377 -145313763 + AluSx SINE Alu 1 295 -17 2147 125 3 0 chrX 31660900 31661195 -145312945 - AluSx SINE Alu -16 296 1 9245 83 21 101 chrX 31661727 31662012 -145312128 + Tigger1 DNA MER2_type 2 308 -2110 2492 84 0 0 chrX 31662012 31662320 -145311820 - AluSq SINE Alu -5 308 1 9245 83 21 101 chrX 31662320 31662397 -145311743 + Tigger1 DNA MER2_type 308 390 -2028 2103 116 3 31 chrX 31662397 31662717 -145311423 - AluSq SINE Alu -2 311 1 9245 83 21 101 chrX 31662717 31663898 -145310242 + Tigger1 DNA MER2_type 390 1422 -996 2329 116 0 0 chrX 31663907 31664217 -145309923 - AluSg SINE Alu 0 310 1 1866 77 0 0 chrX 31664245 31664467 -145309673 - AluSc SINE Alu -58 251 30 1557 128 4 4 chrX 31664567 31664832 -145309308 + AluSp SINE Alu 63 313 0 2344 101 0 0 chrX 31664841 31665149 -145308991 + AluSg SINE Alu 1 308 -2 914 138 66 30 chrX 31665176 31665343 -145308797 + FAM SINE Alu 1 46 -3 5922 133 20 5 chrX 31665351 31665839 -145308301 + Tigger1 DNA MER2_type 1465 1975 -443 2083 123 0 16 chrX 31665839 31666156 -145307984 - AluSx SINE Alu 0 312 1 5922 133 20 5 chrX 31666156 31666607 -145307533 + Tigger1 DNA MER2_type 1975 2418 0 195 42 0 0 chrX 31666611 31666635 -145307505 + (TATATG)n Simple_repeat Simple_repeat 5 28 0 2089 145 0 13 chrX 31666791 31667102 -145307038 + AluJo SINE Alu 1 307 -5 2259 116 3 0 chrX 31667143 31667437 -145306703 + AluSx SINE Alu 2 296 -16 2249 99 0 0 chrX 31667538 31667843 -145306297 - AluSg SINE Alu 0 305 1 207 0 0 0 chrX 31667850 31667873 -145306267 + (T)n Simple_repeat Simple_repeat 1 23 0 2850 75 13 5 chrX 31667896 31668268 -145305872 + THE1C LTR MaLR 1 375 0 10593 113 33 12 chrX 31668269 31669627 -145304513 + THE1C-int LTR MaLR 2 1398 -182 2232 122 0 3 chrX 31669627 31669930 -145304210 + AluSq SINE Alu 1 302 -11 10593 113 33 12 chrX 31669930 31670117 -145304023 + THE1C-int LTR MaLR 1398 1580 0 2334 91 18 35 chrX 31670132 31670253 -145303887 + THE1C LTR MaLR 41 163 -212 2073 142 7 0 chrX 31670253 31670556 -145303584 - AluSx SINE Alu -7 305 1 2334 91 18 35 chrX 31670556 31670775 -145303365 + THE1C LTR MaLR 163 375 0 1224 233 43 16 chrX 31670952 31671280 -145302860 + MLT1E LTR MaLR 1 439 -154 1636 170 66 10 chrX 31671280 31671568 -145302572 + AluJo SINE Alu 3 306 -6 1224 233 43 16 chrX 31671568 31671722 -145302418 + MLT1E LTR MaLR 439 587 -6 1486 211 43 56 chrX 31671728 31672039 -145302101 + MLT1E-int LTR MaLR 1 315 -1056 2199 134 3 0 chrX 31672039 31672346 -145301794 - AluSx SINE Alu -4 308 1 1486 211 43 56 chrX 31672346 31672560 -145301580 + MLT1E-int LTR MaLR 315 638 -733 1974 117 35 90 chrX 31672612 31672902 -145301238 - MER7A DNA MER2_type -2692 346 42 1468 183 17 31 chrX 31672902 31673191 -145300949 - AluJo SINE Alu -10 302 18 1974 117 35 90 chrX 31673191 31673210 -145300930 - MER7A DNA MER2_type -2996 42 24 2177 114 0 35 chrX 31673210 31673381 -145300759 - AluSx SINE Alu -8 304 147 2411 78 0 7 chrX 31673381 31673677 -145300463 - AluSc SINE Alu -15 294 1 2177 114 0 35 chrX 31673677 31673820 -145300320 - AluSx SINE Alu -165 147 1 1974 117 35 90 chrX 31673820 31673876 -145300264 - MER7A DNA MER2_type -3014 24 2 269 265 59 0 chrX 31674111 31674179 -145299961 + MLT1E-int LTR MaLR 820 891 -480 286 241 0 0 chrX 31674281 31674339 -145299801 + MLT1E-int LTR MaLR 962 1019 -352 2303 103 0 3 chrX 31674369 31674669 -145299471 - AluSx SINE Alu -13 299 1 455 144 9 90 chrX 31674709 31674820 -145299320 + MLT1F LTR MaLR 441 542 0 2155 115 0 26 chrX 31674901 31675214 -145298926 + AluSx SINE Alu 1 305 -7 1375 137 208 8 chrX 31675214 31675455 -145298685 + AluSg1 SINE Alu 1 289 -20 2281 101 7 7 chrX 31675515 31675823 -145298317 - AluSg SINE Alu 0 310 3 282 238 19 19 chrX 31675865 31675996 -145298144 - L1M3 LINE L1 -364 5798 5726 270 0 43 43 chrX 31675996 31676043 -145298097 + (TTTC)n Simple_repeat Simple_repeat 3 49 0 832 216 5 26 chrX 31676045 31676091 -145298049 - AluJb SINE Alu -2 310 265 4873 90 16 42 chrX 31676091 31676626 -145297514 + LTR8 LTR ERV1 1 549 -142 2419 79 0 0 chrX 31676626 31676917 -145297223 + AluSg SINE Alu 1 291 -19 2320 107 3 0 chrX 31676927 31677235 -145296905 + AluSp SINE Alu 1 309 -4 4873 90 16 42 chrX 31677235 31677398 -145296742 + LTR8 LTR ERV1 558 691 0 832 216 5 26 chrX 31677398 31677541 -145296599 - AluJb SINE Alu -47 265 125 968 142 0 0 chrX 31677555 31677696 -145296444 - FLAM_C SINE Alu 0 143 3 2133 121 14 0 chrX 31677753 31678050 -145296090 - AluSx SINE Alu -11 301 1 682 240 47 0 chrX 31678052 31678202 -145295938 - MER63 DNA MER1_type -53 783 1 428 237 92 16 chrX 31678227 31678450 -145295690 - L1M3 LINE L1 -462 5659 5423 * 458 222 27 97 chrX 31678447 31678632 -145295508 - L1MA10 LINE L1 -1 6333 6162 1135 139 25 64 chrX 31678635 31678679 -145295461 - MLT1A1 LTR MaLR 0 365 321 2520 61 0 3 chrX 31678679 31678975 -145295165 + AluY SINE Alu 1 295 -16 1135 139 25 64 chrX 31678975 31679132 -145295008 - MLT1A1 LTR MaLR -44 321 172 832 137 7 52 chrX 31679137 31679290 -145294850 + Ricksha DNA DNA 202 347 -2899 1416 141 0 41 chrX 31679290 31679510 -145294630 + MLT2B2 LTR ERVL 1 211 -304 468 0 0 0 chrX 31679514 31679566 -145294574 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 270 150 0 0 chrX 31679574 31679614 -145294526 + AluS SINE Alu 232 271 -31 677 149 6 0 chrX 31679616 31679791 -145294349 + (TA)n Simple_repeat Simple_repeat 2 177 0 327 25 0 0 chrX 31679793 31679833 -145294307 + (CA)n Simple_repeat Simple_repeat 2 41 0 597 143 10 0 chrX 31679833 31679931 -145294209 - AluJ/FLAM SINE Alu -211 101 3 1894 176 49 42 chrX 31679933 31680360 -145293780 - L1ME1 LINE L1 -340 5826 5397 570 120 9 65 chrX 31680387 31680495 -145293645 - AluJo SINE Alu -91 221 120 1415 165 70 6 chrX 31680495 31680811 -145293329 - L1ME1 LINE L1 -761 5385 5050 1316 203 69 74 chrX 31680849 31680942 -145293198 + L1MEc LINE L1 1543 1635 -4761 2259 70 0 0 chrX 31680942 31681213 -145292927 + AluSg SINE Alu 31 301 -9 1316 203 69 74 chrX 31681213 31681290 -145292850 + L1MEc LINE L1 1635 1711 -4685 1509 153 0 0 chrX 31681290 31681513 -145292627 + AluJb SINE Alu 85 307 -5 1316 203 69 74 chrX 31681513 31681605 -145292535 + L1MEc LINE L1 1711 1802 -4594 1648 216 84 53 chrX 31681605 31681664 -145292476 - MLT1D LTR MaLR 0 505 449 2111 98 7 39 chrX 31681664 31681970 -145292170 - AluSx SINE Alu -16 296 1 1648 216 84 53 chrX 31681970 31682400 -145291740 - MLT1D LTR MaLR -56 449 1 1316 203 69 74 chrX 31682400 31682569 -145291571 + L1MEc LINE L1 1802 1974 -4422 26 30 0 0 chrX 31682581 31682614 -145291526 + AT_rich Low_complexity Low_complexity 1 33 0 270 174 0 0 chrX 31682624 31682670 -145291470 + MSTA LTR MaLR 1 46 -382 1557 138 23 112 chrX 31682675 31683023 -145291117 - AluYb8 SINE Alu -1 317 1 1056 90 0 0 chrX 31683047 31683180 -145290960 - AluSq/x SINE Alu -179 133 1 424 192 0 0 chrX 31683182 31683255 -145290885 + MSTA LTR MaLR 38 110 -318 * 901 97 152 0 chrX 31683250 31683395 -145290745 + MSTA LTR MaLR 250 416 -12 734 160 0 17 chrX 31683395 31683514 -145290626 - FLAM_C SINE Alu -25 118 2 1734 195 0 0 chrX 31683700 31683997 -145290143 + AluJb SINE Alu 1 297 -15 281 289 199 21 chrX 31683998 31684289 -145289851 - L1ME LINE L1 -563 5599 5257 1911 118 0 0 chrX 31684327 31684582 -145289558 + AluSq SINE Alu 1 255 -58 2288 110 3 0 chrX 31684595 31684896 -145289244 + AluSp SINE Alu 1 302 -11 1939 129 18 7 chrX 31684966 31685252 -145288888 - AluJb SINE Alu -13 299 11 280 301 129 32 chrX 31685356 31685635 -145288505 - L1ME1 LINE L1 -1118 5028 4723 227 235 41 41 chrX 31685761 31685839 -145288301 + L2 LINE L2 2752 2829 -485 1968 127 0 33 chrX 31685839 31686001 -145288139 - AluSx SINE Alu -22 290 124 232 47 23 23 chrX 31686001 31686044 -145288096 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2074 119 0 3 chrX 31686044 31686329 -145287811 - AluSx SINE Alu -28 284 1 1968 127 0 33 chrX 31686329 31686465 -145287675 - AluSx SINE Alu -186 126 1 227 235 41 41 chrX 31686465 31686484 -145287656 + L2 LINE L2 2828 2849 -465 238 247 24 24 chrX 31686499 31686584 -145287556 - L1ME1 LINE L1 -1488 4658 4574 212 0 0 35 chrX 31686584 31686613 -145287527 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 * 831 72 0 0 chrX 31686612 31686723 -145287417 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 778 305 24 41 chrX 31687101 31687396 -145286744 + LTR16A1 LTR ERVL 168 457 0 315 284 28 66 chrX 31687504 31687642 -145286498 + L1MC4 LINE L1 5039 5168 -978 1941 151 35 0 chrX 31687642 31687980 -145286160 + L1MA9 LINE L1 5963 6312 0 315 284 28 66 chrX 31687980 31688052 -145286088 + L1MC4 LINE L1 5168 5241 -905 339 273 110 5 chrX 31688088 31688297 -145285843 + L1MC4 LINE L1 5264 5494 -2314 1372 254 82 10 chrX 31688309 31688710 -145285430 + L1MC4 LINE L1 5439 5868 -1940 1527 170 24 19 chrX 31688717 31689152 -145284988 + L1MC4 LINE L1 5527 5809 -345 1097 134 0 17 chrX 31689252 31689424 -145284716 - AluY SINE Alu -38 273 105 270 256 98 0 chrX 31689454 31689536 -145284604 + L1MC4 LINE L1 6614 6703 -1339 270 256 98 0 chrX 31689558 31689640 -145284500 + L1MC4 LINE L1 6614 6703 -1339 206 133 0 44 chrX 31689640 31689685 -145284455 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 258 296 23 0 chrX 31689688 31689776 -145284364 + L1MC4 LINE L1 6614 6703 -1339 838 199 12 18 chrX 31689788 31690129 -145284011 + (TATATG)n Simple_repeat Simple_repeat 1 339 0 229 289 0 0 chrX 31690130 31690182 -145283958 + (TATG)n Simple_repeat Simple_repeat 4 55 0 230 289 0 22 chrX 31690182 31690272 -145283868 + L1MC4 LINE L1 6614 6701 -1341 228 281 22 22 chrX 31690264 31690353 -145283787 - L1MC4 LINE L1 -1339 6703 6615 * 228 237 0 65 chrX 31690387 31690480 -145283660 - L1MC4 LINE L1 -1342 6700 6614 595 209 26 0 chrX 31690485 31690638 -145283502 + (TATATG)n Simple_repeat Simple_repeat 4 160 0 416 224 64 24 chrX 31690728 31690853 -145283287 - Charlie4 DNA MER1_type -1815 146 17 2260 77 0 3 chrX 31691030 31691315 -145282825 - AluSx SINE Alu -19 293 10 2254 99 3 20 chrX 31691476 31691779 -145282361 + AluSp SINE Alu 1 298 -15 2303 97 0 0 chrX 31691811 31692101 -145282039 + AluSx SINE Alu 1 290 -22 243 146 0 0 chrX 31692276 31692317 -145281823 + (TA)n Simple_repeat Simple_repeat 1 41 0 1238 135 0 0 chrX 31692317 31692495 -145281645 - AluSg/x SINE Alu -5 305 128 496 311 91 28 chrX 31692621 31692850 -145281290 - L1M4 LINE L1 -1832 4314 4048 1963 130 13 19 chrX 31692850 31693158 -145280982 + AluSx SINE Alu 1 306 -6 496 311 91 28 chrX 31693158 31693324 -145280816 - L1M4 LINE L1 -2098 4048 3894 868 148 0 0 chrX 31693346 31693468 -145280672 - FLAM_C SINE Alu -21 122 1 335 356 0 5 chrX 31693472 31693666 -145280474 - L1M4 LINE L1 -2265 3881 3689 398 249 76 93 chrX 31693905 31694130 -145280010 - L1M4 LINE L1 -2697 3449 3229 2051 115 0 33 chrX 31694737 31695042 -145279098 + AluSx SINE Alu 1 295 -17 213 284 62 25 chrX 31695100 31695181 -145278959 + L2 LINE L2 3160 3243 -29 261 284 0 0 chrX 31695191 31695258 -145278882 - MIR SINE MIR -2 260 194 946 148 9 83 chrX 31695305 31695451 -145278689 + L1MB2 LINE L1 5957 6081 -90 2309 96 0 0 chrX 31695451 31695742 -145278398 - AluSg SINE Alu -18 292 2 946 148 9 83 chrX 31695742 31695825 -145278315 + L1MB2 LINE L1 6081 6169 -2 1108 167 21 54 chrX 31695849 31695930 -145278210 + L1MB2 LINE L1 5423 5505 -663 2225 86 0 92 chrX 31695930 31696267 -145277873 + AluSq SINE Alu 1 306 -7 1108 167 21 54 chrX 31696267 31696425 -145277715 + L1MB2 LINE L1 5505 5654 -514 239 167 0 0 chrX 31696450 31696486 -145277654 - tRNA-Tyr-TAC tRNA tRNA -39 37 2 432 159 0 0 chrX 31696486 31696563 -145277577 + L1MB2 LINE L1 5655 5731 -437 314 98 0 0 chrX 31696564 31696605 -145277535 - MSTA LTR MaLR 0 428 388 1056 117 0 0 chrX 31696605 31696742 -145277398 + AluSq/x SINE Alu 1 137 -176 2062 133 3 22 chrX 31696743 31697059 -145277081 + AluSq SINE Alu 3 312 -1 1247 172 27 99 chrX 31697069 31697401 -145276739 + AluSq SINE Alu 1 308 -5 1669 119 45 48 chrX 31697403 31697454 -145276686 + L1MB2 LINE L1 5781 5831 -340 2282 123 0 0 chrX 31697454 31697764 -145276376 + AluSx SINE Alu 1 310 -2 1669 119 45 48 chrX 31697764 31697962 -145276178 + L1MB2 LINE L1 5831 6031 -140 2280 92 3 0 chrX 31697962 31698254 -145275886 - AluSq SINE Alu -20 293 1 1669 119 45 48 chrX 31698254 31698313 -145275827 + L1MB2 LINE L1 6031 6089 -82 722 104 0 0 chrX 31698342 31698438 -145275702 - AluS SINE Alu -212 100 5 1102 140 0 17 chrX 31698450 31698628 -145275512 - AluSg/x SINE Alu -2 308 134 947 194 162 35 chrX 31698628 31698943 -145275197 + MLT1D LTR MaLR 147 501 -4 739 189 15 0 chrX 31699206 31699338 -145274802 + AluJo SINE Alu 2 135 -177 730 132 0 0 chrX 31699545 31699651 -145274489 + FLAM_C SINE Alu 21 126 -17 1773 133 0 104 chrX 31699951 31700063 -145274077 + AluJo SINE Alu 1 123 -189 2183 122 6 6 chrX 31700063 31700375 -145273765 - AluSp SINE Alu -1 312 1 1773 133 0 104 chrX 31700375 31700395 -145273745 + AluJo SINE Alu 123 143 -169 2565 75 0 0 chrX 31700395 31700701 -145273439 - AluSg SINE Alu -4 306 1 2204 136 0 0 chrX 31700707 31701017 -145273123 - AluSx SINE Alu -2 310 1 1773 133 0 104 chrX 31701017 31701044 -145273096 + AluJo SINE Alu 148 176 -136 2368 75 17 0 chrX 31701044 31701336 -145272804 + AluSp SINE Alu 1 297 -16 1773 133 0 104 chrX 31701336 31701513 -145272627 + AluJo SINE Alu 176 310 -2 2327 90 0 0 chrX 31701587 31701876 -145272264 - AluSc SINE Alu -20 289 1 1400 116 5 0 chrX 31702331 31702520 -145271620 - AluJo SINE Alu -114 198 9 1981 121 62 0 chrX 31702660 31702950 -145271190 + AluSg SINE Alu 1 308 -2 2183 86 10 7 chrX 31703036 31703327 -145270813 + AluSp SINE Alu 1 292 -21 246 32 0 0 chrX 31703330 31703361 -145270779 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 192 77 0 0 chrX 31703825 31703851 -145270289 + (CAAAG)n Simple_repeat Simple_repeat 2 27 0 530 143 0 12 chrX 31703919 31704003 -145270137 - AluJ/FLAM SINE Alu -228 84 2 1692 141 0 85 chrX 31704039 31704167 -145269973 + AluJo SINE Alu 1 138 -174 2342 86 0 7 chrX 31704167 31704459 -145269681 - AluSx SINE Alu -22 290 1 1692 141 0 85 chrX 31704459 31704649 -145269491 + AluJo SINE Alu 138 292 -20 366 23 0 0 chrX 31704761 31704804 -145269336 + (TG)n Simple_repeat Simple_repeat 2 44 0 1506 143 0 5 chrX 31704837 31705061 -145269079 - AluJo SINE Alu -89 223 1 26 0 0 0 chrX 31705181 31705207 -145268933 + AT_rich Low_complexity Low_complexity 1 26 0 1232 161 83 0 chrX 31705609 31705814 -145268326 + AluJb SINE Alu 1 222 -90 21 0 0 0 chrX 31705838 31705859 -145268281 + AT_rich Low_complexity Low_complexity 1 21 0 476 179 43 79 chrX 31706120 31706227 -145267913 - L1MC/D LINE L1 -2000 5808 5706 1520 132 0 152 chrX 31706227 31706569 -145267571 + AluY SINE Alu 5 294 -17 476 179 43 79 chrX 31706569 31706601 -145267539 - L1MC/D LINE L1 -2102 5706 5674 616 115 0 185 chrX 31706632 31706789 -145267351 - FLAM_C SINE Alu -11 132 5 270 281 0 0 chrX 31706808 31706872 -145267268 - L1MC/D LINE L1 -2166 5642 5579 2125 122 0 3 chrX 31707494 31707789 -145266351 - AluSx SINE Alu -14 298 5 4920 86 6 6 chrX 31707794 31708447 -145265693 + LTR8 LTR ERV1 37 689 -2 1616 118 39 0 chrX 31708447 31708676 -145265464 - AluJo SINE Alu -74 238 1 2299 82 17 0 chrX 31708902 31709196 -145264944 + AluSx SINE Alu 1 299 -13 363 64 0 0 chrX 31709197 31709244 -145264896 - LTR8 LTR ERV1 -643 48 2 428 139 0 0 chrX 31709244 31709316 -145264824 + AluJ/FRAM SINE Alu 232 303 -9 287 252 33 70 chrX 31709411 31709647 -145264493 + LTR16C LTR ERVL 229 457 0 2480 80 0 0 chrX 31709853 31710153 -145263987 + AluSx SINE Alu 1 300 -12 1683 225 62 16 chrX 31710260 31710774 -145263366 + L1PB4 LINE L1 5273 5833 -329 1806 204 9 49 chrX 31710774 31711057 -145263083 - MLT1C LTR MaLR 0 467 174 2339 95 3 3 chrX 31711057 31711362 -145262778 - AluSg SINE Alu -5 305 1 1806 204 9 49 chrX 31711362 31711439 -145262701 - MLT1C LTR MaLR -293 174 124 2325 97 0 10 chrX 31711439 31711750 -145262390 - AluSx SINE Alu -4 308 1 1806 204 9 49 chrX 31711750 31711819 -145262321 - MLT1C LTR MaLR -343 124 54 630 210 105 139 chrX 31711855 31711927 -145262213 + L1MC4a LINE L1 5834 5907 -1901 2156 122 3 0 chrX 31711927 31712231 -145261909 + AluSx SINE Alu 4 308 -4 2253 88 0 3 chrX 31712236 31712546 -145261594 - AluSx SINE Alu 0 309 1 630 210 105 139 chrX 31712546 31712813 -145261327 + L1MC4a LINE L1 5911 6186 -1622 2157 100 4 4 chrX 31712813 31713115 -145261025 - AluSc SINE Alu 0 302 1 630 210 105 139 chrX 31713115 31713127 -145261013 + L1MC4a LINE L1 6186 6197 -1611 1691 188 7 17 chrX 31713127 31713420 -145260720 - AluJo SINE Alu -22 290 1 630 210 105 139 chrX 31713420 31713610 -145260530 + L1MC4a LINE L1 6197 6366 -1442 2278 95 3 0 chrX 31713611 31713905 -145260235 - AluSc SINE Alu -14 295 1 24 67 0 0 chrX 31713933 31713978 -145260162 + AT_rich Low_complexity Low_complexity 1 45 0 231 200 12 62 chrX 31713984 31714064 -145260076 + L1P LINE L1 3178 3253 -2893 2007 137 0 10 chrX 31714148 31714448 -145259692 - AluJb SINE Alu -12 300 4 2234 102 3 3 chrX 31714531 31714825 -145259315 - AluSc SINE Alu -15 294 1 183 204 0 0 chrX 31714835 31714879 -145259261 + T-rich Low_complexity Low_complexity 1 44 0 495 246 8 101 chrX 31714954 31715355 -145258785 + L1MC4 LINE L1 6876 7140 -821 2037 91 95 0 chrX 31715355 31715629 -145258511 + AluSx SINE Alu 1 300 -12 495 246 8 101 chrX 31715629 31715744 -145258396 + L1MC4 LINE L1 7140 7264 -697 1239 185 112 46 chrX 31715885 31716252 -145257888 + LTR37A LTR ERV1 18 408 -18 349 251 35 150 chrX 31716306 31716379 -145257761 + L1MC4 LINE L1 7346 7426 -616 2224 103 7 0 chrX 31716379 31716679 -145257461 + AluSp SINE Alu 1 302 -11 349 251 35 150 chrX 31716679 31716901 -145257239 + L1MC4 LINE L1 7426 7594 -448 1874 86 123 0 chrX 31716901 31717169 -145256971 + AluSq SINE Alu 1 301 -2 349 251 35 150 chrX 31717169 31717239 -145256901 + L1MC4 LINE L1 7594 7670 -372 1996 108 54 4 chrX 31717284 31717562 -145256578 - AluY SINE Alu -19 292 1 1821 179 55 6 chrX 31717701 31718047 -145256093 + MLT1A1 LTR MaLR 1 363 -2 1179 123 0 0 chrX 31718058 31718213 -145255927 - AluSg/x SINE Alu -20 292 138 226 333 0 0 chrX 31718288 31718375 -145255765 + L1MC5 LINE L1 7808 7894 -67 832 143 0 126 chrX 31718383 31718565 -145255575 - FAM SINE Alu -2 47 1 2218 105 3 16 chrX 31718766 31719081 -145255059 + AluSx SINE Alu 1 311 -1 180 265 0 41 chrX 31719442 31719491 -145254649 - MIR SINE MIR -129 79 33 420 269 41 47 chrX 31719505 31719676 -145254464 + MER20B DNA MER1_type 1 170 -613 2263 102 0 3 chrX 31719882 31720177 -145253963 + AluSx SINE Alu 3 296 -16 1682 163 76 7 chrX 31720622 31720910 -145253230 - AluJb SINE Alu -4 308 1 252 195 37 122 chrX 31721072 31721154 -145252986 - L2 LINE L2 0 3272 3198 1660 91 0 0 chrX 31721156 31721376 -145252764 - AluSq SINE Alu 0 313 94 1073 58 0 36 chrX 31721389 31721527 -145252613 + AluSx SINE Alu 1 133 -180 1200 158 0 0 chrX 31724273 31724493 -145249647 + AluSx SINE Alu 121 340 0 180 225 42 42 chrX 31724498 31724569 -145249571 + MIR SINE MIR 2 72 -190 1484 233 77 22 chrX 31724862 31724927 -145249213 - L1ME2 LINE L1 0 6164 6104 2061 137 0 0 chrX 31724927 31725220 -145248920 + AluSx SINE Alu 3 295 -17 1484 233 77 22 chrX 31725220 31725609 -145248531 - L1ME2 LINE L1 -60 6104 5685 2339 105 0 9 chrX 31726607 31726922 -145247218 + AluSx SINE Alu 1 312 0 749 233 90 5 chrX 31727054 31727131 -145247009 - MIR SINE MIR -19 243 174 1483 250 104 51 chrX 31727131 31727756 -145246384 - MLT2F LTR ERVL -1 662 5 749 233 90 5 chrX 31727756 31727901 -145246239 - MIR SINE MIR -88 174 2 2175 120 7 3 chrX 31727934 31728413 -145245727 + AluSx SINE Alu 1 480 0 659 326 13 8 chrX 31728415 31728654 -145245486 + L3 LINE CR1 1336 1575 -2 2371 94 0 0 chrX 31729451 31729748 -145244392 + AluSc SINE Alu 1 297 -12 989 268 105 24 chrX 31729764 31729978 -145244162 + LTR33 LTR ERVL 29 224 -297 270 0 0 0 chrX 31729978 31730008 -145244132 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2291 86 7 0 chrX 31730010 31730290 -145243850 - AluSx SINE Alu -30 282 1 989 268 105 24 chrX 31730290 31730528 -145243612 + LTR33 LTR ERVL 224 521 0 1037 205 12 37 chrX 31730714 31730808 -145243332 + MIR SINE MIR 14 109 -153 1270 145 4 40 chrX 31730808 31731035 -145243105 + MER20 DNA MER1_type 1 219 0 1037 205 12 37 chrX 31731035 31731184 -145242956 + MIR SINE MIR 109 251 -11 192 315 82 14 chrX 31731297 31731370 -145242770 + L2 LINE L2 3200 3277 -36 22 0 0 0 chrX 31731686 31731708 -145242432 + AT_rich Low_complexity Low_complexity 1 22 0 457 238 74 45 chrX 31732424 31732489 -145241651 - MIR SINE MIR -11 251 189 2069 124 10 0 chrX 31732489 31732779 -145241361 + AluSx SINE Alu 1 293 -19 192 77 0 0 chrX 31732779 31732805 -145241335 + (TATATG)n Simple_repeat Simple_repeat 4 29 0 457 238 74 45 chrX 31732805 31732940 -145241200 - MIR SINE MIR -72 190 44 2065 107 40 0 chrX 31733104 31733399 -145240741 - AluSg SINE Alu 0 306 1 207 100 0 0 chrX 31733645 31733675 -145240465 + (GAAA)n Simple_repeat Simple_repeat 4 33 0 758 192 133 10 chrX 31733746 31733949 -145240191 - MIR SINE MIR -33 229 2 1080 212 144 99 chrX 31734154 31734555 -145239585 - MLT1G1 LTR MaLR -12 583 201 5163 74 4 40 chrX 31734555 31734682 -145239458 - LTR8 LTR ERV1 0 691 561 2483 94 0 0 chrX 31734682 31734991 -145239149 - AluSg SINE Alu -1 309 1 5163 74 4 40 chrX 31734991 31735414 -145238726 - LTR8 LTR ERV1 -130 561 170 1966 112 13 49 chrX 31735414 31735740 -145238400 - AluSg1 SINE Alu 0 309 1 5163 74 4 40 chrX 31735740 31735905 -145238235 - LTR8 LTR ERV1 -521 170 1 1080 212 144 99 chrX 31735905 31736060 -145238080 - MLT1G1 LTR MaLR -394 201 2 938 228 16 0 chrX 31736398 31736587 -145237553 + MER58A DNA MER1_type 27 218 -6 1930 151 0 3 chrX 31738021 31738313 -145235827 + AluJo SINE Alu 1 291 -21 1925 142 19 19 chrX 31738321 31738630 -145235510 + AluJo SINE Alu 1 309 -3 518 201 128 13 chrX 31738637 31738786 -145235354 + L1MC4a LINE L1 5600 5765 -2043 482 116 7 0 chrX 31738788 31738861 -145235279 - MER51B LTR ERV1 0 633 314 299 167 0 0 chrX 31738864 31738912 -145235228 - MER58 DNA MER1_type -2189 231 184 2271 107 3 0 chrX 31738958 31739258 -145234882 + AluSx SINE Alu 1 301 -11 435 223 90 18 chrX 31739259 31739425 -145234715 + L1MC4a LINE L1 5818 5995 -1813 1334 247 79 28 chrX 31739445 31739902 -145234238 - LTR33A LTR ERVL -43 480 1 2400 94 0 0 chrX 31740241 31740539 -145233601 + AluSg SINE Alu 1 298 -12 1049 161 6 0 chrX 31740726 31740887 -145233253 - AluJb SINE Alu -22 290 129 2436 78 0 0 chrX 31740908 31741201 -145232939 + AluY SINE Alu 1 293 -18 2129 122 3 0 chrX 31741212 31741507 -145232633 + AluSq SINE Alu 5 300 -13 2646 136 15 31 chrX 31741507 31741554 -145232586 - L1MB2 LINE L1 -5 6166 6120 2281 103 0 3 chrX 31741554 31741854 -145232286 - AluSx SINE Alu -13 299 1 2646 136 15 31 chrX 31741854 31742153 -145231987 - L1MB2 LINE L1 -51 6120 5826 1647 168 12 59 chrX 31742153 31742326 -145231814 - AluJo SINE Alu -5 307 154 2323 104 7 0 chrX 31742326 31742635 -145231505 - AluSx SINE Alu -1 311 1 1647 168 12 59 chrX 31742635 31742783 -145231357 - AluJo SINE Alu -158 154 1 2646 136 15 31 chrX 31742783 31742890 -145231250 - L1MB2 LINE L1 -345 5826 5719 2249 98 19 3 chrX 31742906 31743213 -145230927 + AluSp SINE Alu 1 312 -1 253 303 76 17 chrX 31743452 31743571 -145230569 + MLT1L LTR MaLR 424 549 -66 183 139 0 0 chrX 31743707 31743743 -145230397 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 823 152 0 0 chrX 31743967 31744092 -145230048 - FLAM_C SINE Alu -8 125 1 1466 272 57 83 chrX 31744191 31744580 -145229560 + L1MEd LINE L1 285 683 -5627 2282 101 3 0 chrX 31744580 31744878 -145229262 + AluSx SINE Alu 1 299 -13 1466 272 57 83 chrX 31744878 31745498 -145228642 + L1MEd LINE L1 683 1318 -4992 2122 113 0 0 chrX 31745498 31745803 -145228337 + AluSx SINE Alu 1 305 0 2251 99 0 3 chrX 31745807 31746135 -145228005 + AluSx SINE Alu 1 327 0 1466 272 57 83 chrX 31746135 31746436 -145227704 + L1MEd LINE L1 1321 1614 -4696 2473 192 60 31 chrX 31746453 31747068 -145227072 + L1MEd LINE L1 2353 2985 -3144 966 160 22 22 chrX 31747068 31747249 -145226891 - MLT1A1 LTR MaLR -175 190 10 2623 43 0 10 chrX 31747304 31747605 -145226535 - AluY SINE Alu -13 298 1 238 218 143 38 chrX 31748008 31748141 -145225999 - L1M4 LINE L1 -366 5812 5666 228 252 29 87 chrX 31748248 31748351 -145225789 - L1M4 LINE L1 -2465 5530 5434 2456 84 0 0 chrX 31748358 31748655 -145225485 - AluSx SINE Alu -15 297 1 25 0 0 0 chrX 31748659 31748684 -145225456 + AT_rich Low_complexity Low_complexity 1 25 0 2386 92 10 0 chrX 31748687 31748992 -145225148 + AluSc SINE Alu 1 308 -1 370 82 0 0 chrX 31749001 31749050 -145225090 + AluSc SINE Alu 247 295 -4 429 260 38 30 chrX 31749069 31749284 -145224856 - L1M4 LINE L1 -748 5398 5198 679 157 45 165 chrX 31749326 31749593 -145224547 - L1MC5 LINE L1 -36 7925 7691 22 35 0 0 chrX 31749761 31749790 -145224350 + AT_rich Low_complexity Low_complexity 1 29 0 910 278 82 54 chrX 31749839 31750157 -145223983 - L1M4 LINE L1 -1361 4785 4477 2300 113 0 0 chrX 31750157 31750468 -145223672 + AluSx SINE Alu 1 311 -1 910 278 82 54 chrX 31750468 31750726 -145223414 - L1M4 LINE L1 -1669 4477 4185 2263 84 0 69 chrX 31750726 31751061 -145223079 - AluSx SINE Alu 0 312 1 910 278 82 54 chrX 31751061 31751169 -145222971 - L1M4 LINE L1 -1961 4185 4081 1251 196 87 7 chrX 31751204 31751480 -145222660 - MLT2F LTR ERVL 0 663 366 1335 148 51 0 chrX 31751522 31751739 -145222401 + ERVL LTR ERVL 5247 5474 -290 207 162 0 0 chrX 31752018 31752055 -145222085 + (CATA)n Simple_repeat Simple_repeat 4 40 0 2351 92 3 0 chrX 31752057 31752350 -145221790 - AluSp SINE Alu -19 294 1 298 127 0 18 chrX 31752416 31752471 -145221669 - MLT2F LTR ERVL -2 661 608 1042 241 20 45 chrX 31752514 31752725 -145221415 - MLT2F LTR ERVL -57 606 400 2757 84 17 6 chrX 31752725 31753083 -145221057 - THE1B LTR MaLR -2 362 1 1042 241 20 45 chrX 31753083 31753116 -145221024 - MLT2F LTR ERVL -263 400 368 696 238 10 7 chrX 31753124 31753328 -145220812 - MLT2F LTR ERVL -413 250 1 2300 94 3 0 chrX 31753343 31753642 -145220498 - AluSq SINE Alu -7 306 7 1781 214 80 40 chrX 31753672 31754196 -145219944 - L1ME1 LINE L1 -5 6161 5617 * 2843 226 68 25 chrX 31754193 31754585 -145219555 - L1ME1 LINE L1 -802 5344 4971 2056 133 3 0 chrX 31754585 31754870 -145219270 + AluSx SINE Alu 1 286 -26 2843 226 68 25 chrX 31754870 31754889 -145219251 - L1ME1 LINE L1 -1175 4971 4954 189 0 0 0 chrX 31754889 31754910 -145219230 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 2843 226 68 25 chrX 31754910 31755461 -145218679 - L1ME1 LINE L1 -1192 4954 4339 751 183 12 91 chrX 31755457 31755506 -145218634 - L1ME1 LINE L1 -2992 3154 3103 * 2286 91 0 7 chrX 31755506 31755817 -145218323 - AluSx SINE Alu 0 309 1 751 183 12 91 chrX 31755817 31756007 -145218133 - L1ME1 LINE L1 -3043 3103 2933 597 206 168 0 chrX 31756033 31756188 -145217952 + MLT1B LTR MaLR 210 390 0 204 40 0 0 chrX 31757528 31757553 -145216587 + (TG)n Simple_repeat Simple_repeat 1 25 0 1638 122 157 22 chrX 31758547 31758859 -145215281 + L1MB8 LINE L1 5507 5860 -324 855 164 55 33 chrX 31758864 31759047 -145215093 + L1MB8 LINE L1 5991 6177 -1 2412 82 0 3 chrX 31759055 31759358 -145214782 + AluSg SINE Alu 1 302 -8 2027 144 0 3 chrX 31759557 31759856 -145214284 - AluJb SINE Alu -14 298 1 786 328 52 28 chrX 31760048 31760509 -145213631 - MARNA DNA Mariner -8 578 107 331 340 31 5 chrX 31760509 31760693 -145213447 - MIR SINE MIR -36 226 37 1855 93 12 8 chrX 31760699 31760957 -145213183 + L1PA10 LINE L1 5889 6147 -21 2313 107 7 0 chrX 31760959 31761304 -145212836 - AluSx SINE Alu 0 347 1 34 0 0 0 chrX 31761311 31761345 -145212795 + AT_rich Low_complexity Low_complexity 1 34 0 1706 128 68 0 chrX 31761472 31761721 -145212419 - AluSg SINE Alu -39 271 6 562 257 103 49 chrX 31762347 31762376 -145211764 - MIR SINE MIR 0 262 236 2218 104 27 64 chrX 31762376 31762588 -145211552 - THE1B LTR MaLR 0 364 171 2448 99 0 0 chrX 31762588 31762892 -145211248 + AluSx SINE Alu 1 304 -8 2218 104 27 64 chrX 31762892 31763055 -145211085 - THE1B LTR MaLR -193 171 3 562 257 103 49 chrX 31763055 31763271 -145210869 - MIR SINE MIR -26 236 4 856 231 245 44 chrX 31763526 31763938 -145210202 + MLT1H LTR MaLR 40 534 -15 2045 115 0 27 chrX 31764120 31764416 -145209724 - AluSx SINE Alu -1 311 24 1959 89 46 32 chrX 31764563 31764704 -145209436 + AluSx SINE Alu 1 138 -170 2164 105 3 7 chrX 31764704 31764999 -145209141 + AluSc SINE Alu 1 294 -15 1959 89 46 32 chrX 31764999 31765161 -145208979 + AluSx SINE Alu 138 308 0 25 0 0 0 chrX 31765408 31765433 -145208707 + AT_rich Low_complexity Low_complexity 1 25 0 534 197 40 13 chrX 31765433 31765585 -145208555 - L1MC4 LINE L1 -3 8039 7884 1891 137 0 65 chrX 31765604 31765805 -145208335 - AluJb SINE Alu -9 303 129 2238 94 7 32 chrX 31765805 31766114 -145208026 - AluSq SINE Alu -12 301 1 1891 137 0 65 chrX 31766114 31766234 -145207906 - AluJb SINE Alu -183 129 3 1173 221 18 21 chrX 31766284 31766565 -145207575 - L1MC4 LINE L1 -140 7902 7623 1998 138 10 10 chrX 31766566 31766862 -145207278 - AluJo SINE Alu -13 299 4 351 51 57 0 chrX 31766866 31766919 -145207221 - FLAM SINE Alu -2 131 82 1131 119 18 18 chrX 31766921 31767089 -145207051 - AluJo SINE Alu -98 214 47 1064 160 22 0 chrX 31767091 31767272 -145206868 - L1MC4 LINE L1 -409 7633 7449 191 311 253 11 chrX 31767514 31767704 -145206436 + L3 LINE CR1 1334 1569 -8 1913 240 17 21 chrX 31767808 31768291 -145205849 + L1MC4a LINE L1 5377 5857 -1951 2326 99 3 3 chrX 31768294 31768597 -145205543 + AluSx SINE Alu 1 303 -9 2135 117 0 0 chrX 31768618 31768947 -145205193 + AluSq SINE Alu 1 329 0 2353 103 0 0 chrX 31769164 31769464 -145204676 - AluSx SINE Alu -12 300 1 865 170 0 0 chrX 31769532 31769667 -145204473 + FLAM_C SINE Alu 1 135 -8 2212 108 17 0 chrX 31769809 31770106 -145204034 + AluSx SINE Alu 1 302 -10 931 256 65 40 chrX 31770288 31770676 -145203464 + LTR16A1 LTR ERVL 82 457 0 1899 157 0 48 chrX 31771417 31771564 -145202576 + AluJo SINE Alu 1 127 -185 2176 124 7 0 chrX 31771564 31771870 -145202270 + AluSx SINE Alu 1 308 -4 1899 157 0 48 chrX 31771870 31772035 -145202105 + AluJo SINE Alu 127 298 -14 1416 187 11 89 chrX 31772043 31772092 -145202048 + MER58B DNA MER1_type 2 53 -2367 2413 100 0 0 chrX 31772092 31772401 -145201739 - AluSx SINE Alu -3 309 1 1416 187 11 89 chrX 31772401 31772449 -145201691 + MER58B DNA MER1_type 53 103 -2317 2274 95 0 0 chrX 31772449 31772771 -145201369 - AluSq SINE Alu 0 322 1 1416 187 11 89 chrX 31772771 31772979 -145201161 + MER58B DNA MER1_type 103 278 -2142 2741 173 112 18 chrX 31772979 31773551 -145200589 + MLT1E2 LTR MaLR 1 626 0 1416 187 11 89 chrX 31773551 31773611 -145200529 + MER58B DNA MER1_type 278 341 0 659 210 153 0 chrX 31773627 31773784 -145200356 + MER5A DNA MER1_type 9 189 0 1995 98 0 0 chrX 31773815 31774070 -145200070 - AluSx SINE Alu -57 255 1 645 225 50 12 chrX 31774125 31774285 -145199855 - MER110 LTR ERV1 -105 386 221 297 261 92 21 chrX 31774667 31774809 -145199331 + L2 LINE L2 3149 3300 -13 2119 133 0 3 chrX 31775461 31775763 -145198377 - AluSq SINE Alu -12 301 1 1244 192 76 112 chrX 31776316 31776539 -145197601 + LTR37B LTR ERV1 9 238 -230 2232 59 7 56 chrX 31776539 31776844 -145197296 + AluSx SINE Alu 1 290 -22 2299 81 0 20 chrX 31776853 31777151 -145196989 + AluSc SINE Alu 1 292 -17 1244 192 76 112 chrX 31777151 31777390 -145196750 + LTR37B LTR ERV1 246 464 -4 2223 89 4 0 chrX 31777809 31778117 -145196023 + AluSx SINE Alu 1 309 0 2404 88 0 3 chrX 31778127 31778424 -145195716 + AluSx SINE Alu 1 296 -16 379 83 0 0 chrX 31778832 31778880 -145195260 - MSTD LTR MaLR -1 395 348 2306 82 20 16 chrX 31778885 31779189 -145194951 - AluSc SINE Alu -4 305 1 304 185 46 56 chrX 31779555 31779663 -145194477 - L1ME4a LINE L1 -56 6065 5959 1663 186 58 65 chrX 31779673 31779956 -145194184 - MLT1C LTR MaLR -8 459 179 2254 102 0 0 chrX 31779956 31780241 -145193899 - AluSx SINE Alu -27 285 1 1663 186 58 65 chrX 31780241 31780419 -145193721 - MLT1C LTR MaLR -288 179 1 2172 103 14 3 chrX 31780465 31780755 -145193385 - AluSx SINE Alu -19 293 1 454 303 83 0 chrX 31780782 31780914 -145193226 + LTR33 LTR ERVL 55 197 -324 585 315 17 0 chrX 31780927 31781108 -145193032 + LTR33 LTR ERVL 330 513 -8 1972 178 48 30 chrX 31781149 31781168 -145192972 + LTR37B LTR ERV1 1 18 -450 2455 65 0 3 chrX 31781168 31781462 -145192678 + AluY SINE Alu 1 293 -18 306 0 0 0 chrX 31781462 31781496 -145192644 + (TA)n Simple_repeat Simple_repeat 2 35 0 1972 178 48 30 chrX 31781496 31781935 -145192205 + LTR37B LTR ERV1 17 468 0 326 191 0 0 chrX 31781992 31782055 -145192085 - L1ME4a LINE L1 -2038 5770 5708 1164 142 0 0 chrX 31782294 31782470 -145191670 - AluSg/x SINE Alu 0 312 137 243 296 47 21 chrX 31782548 31782713 -145191427 - MIR SINE MIR -26 236 13 510 188 10 21 chrX 31782921 31783017 -145191123 - MER58C DNA MER1_type 0 215 121 2051 101 3 35 chrX 31783042 31783328 -145190812 + AluSx SINE Alu 12 288 -24 23 0 0 0 chrX 31783328 31783351 -145190789 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 13 chrX 31783354 31783659 -145190481 + AluSg SINE Alu 1 302 -8 1403 150 0 0 chrX 31783668 31783888 -145190252 + AluSg/x SINE Alu 83 302 -8 241 206 0 151 chrX 31783897 31783921 -145190219 - MER58C DNA MER1_type -152 63 37 2387 83 7 0 chrX 31783921 31784221 -145189919 + AluSg SINE Alu 1 302 -8 241 206 0 151 chrX 31784221 31784269 -145189871 - MER58C DNA MER1_type -178 37 2 335 276 10 0 chrX 31784269 31784367 -145189773 - L1MEd LINE L1 -5108 1011 913 1259 199 7 43 chrX 31784367 31784643 -145189497 - AluJb SINE Alu -3 309 44 2776 26 0 0 chrX 31785086 31785393 -145188747 + AluY SINE Alu 1 307 -4 2148 132 3 0 chrX 31786283 31786587 -145187553 - AluSx SINE Alu -7 305 1 2512 74 3 0 chrX 31787090 31787389 -145186751 - AluSp SINE Alu -13 300 1 1454 209 16 12 chrX 31787690 31788011 -145186129 - L1ME1 LINE L1 0 6166 5845 2331 100 7 0 chrX 31788022 31788332 -145185808 - AluSx SINE Alu 0 312 1 1094 89 0 0 chrX 31788332 31788467 -145185673 - AluSq/x SINE Alu -176 137 3 2414 209 12 43 chrX 31788469 31788851 -145185289 - L1ME1 LINE L1 -315 5851 5493 2313 103 0 0 chrX 31788851 31789143 -145184997 - AluSg SINE Alu -18 292 1 2414 209 12 43 chrX 31789143 31789359 -145184781 - L1ME1 LINE L1 -673 5493 5272 2447 153 19 36 chrX 31789364 31789697 -145184443 - L1MB7 LINE L1 -19 6165 5828 2449 76 0 22 chrX 31789697 31790012 -145184128 - AluSg SINE Alu -1 309 2 2447 153 19 36 chrX 31790012 31790050 -145184090 - L1MB7 LINE L1 -356 5828 5791 2281 83 3 7 chrX 31790050 31790339 -145183801 + AluSp SINE Alu 1 288 -25 259 44 44 0 chrX 31790340 31790385 -145183755 + (TA)n Simple_repeat Simple_repeat 1 47 0 2447 153 19 36 chrX 31790385 31790482 -145183658 - L1MB7 LINE L1 -392 5792 5702 669 86 0 0 chrX 31790482 31790574 -145183566 + L1PA8 LINE L1 6080 6172 0 2554 158 31 43 chrX 31790575 31791012 -145183128 - L1MB7 LINE L1 -473 5711 5278 1890 149 3 20 chrX 31791012 31791314 -145182826 + AluJo SINE Alu 6 302 -10 2554 158 31 43 chrX 31791314 31791616 -145182524 - L1MB7 LINE L1 -906 5278 4974 229 220 20 0 chrX 31791596 31791646 -145182494 - L1MB7 LINE L1 -2294 3852 3802 * 919 214 16 21 chrX 31791675 31791862 -145182278 - L1MC4 LINE L1 -1139 6903 6718 323 227 0 30 chrX 31791868 31791934 -145182206 + MER58 DNA MER1_type 1 181 -160 2370 92 3 0 chrX 31791934 31792237 -145181903 - AluSc SINE Alu -5 304 1 420 254 71 53 chrX 31792237 31792575 -145181565 - L1MC4a LINE L1 -1318 6490 6147 329 273 45 32 chrX 31792669 31792809 -145181331 + L1M4 LINE L1 3613 3757 -2389 1957 104 0 102 chrX 31792809 31793144 -145180996 + AluSq SINE Alu 1 301 -2 329 273 45 32 chrX 31793144 31793157 -145180983 + L1M4 LINE L1 3757 3768 -2378 208 163 0 61 chrX 31793178 31793227 -145180913 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 781 268 65 4 chrX 31793234 31793480 -145180660 + MIR SINE MIR 2 262 0 358 137 0 0 chrX 31793608 31793659 -145180481 - 5S rRNA rRNA -70 51 1 1589 220 84 81 chrX 31793720 31794341 -145179799 - MER77 LTR ERV1 -8 597 67 851 266 34 48 chrX 31794422 31794913 -145179227 + MLT1H LTR MaLR 2 565 -2 236 307 92 73 chrX 31794988 31795173 -145178967 - L1ME LINE L1 -378 5743 5552 2149 80 90 7 chrX 31795173 31795461 -145178679 - AluSx SINE Alu 0 312 1 236 307 92 73 chrX 31795461 31795493 -145178647 - L1ME LINE L1 -569 5552 5522 820 210 31 97 chrX 31795692 31795834 -145178306 + MIR SINE MIR 2 121 -141 2257 106 7 0 chrX 31795834 31796136 -145178004 + AluSq SINE Alu 1 304 -9 820 210 31 97 chrX 31796136 31796250 -145177890 + MIR SINE MIR 121 241 -21 2607 72 0 0 chrX 31796389 31796696 -145177444 + AluSx SINE Alu 1 307 -5 2440 88 3 0 chrX 31797450 31797756 -145176384 + AluSp SINE Alu 1 307 -6 432 0 0 0 chrX 31797878 31797926 -145176214 + (TG)n Simple_repeat Simple_repeat 1 48 0 234 0 0 0 chrX 31797925 31797951 -145176189 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2051 108 4 7 chrX 31797952 31798231 -145175909 - AluSq SINE Alu -35 278 1 1320 223 83 85 chrX 31799272 31799331 -145174809 - MLT1G LTR MaLR 0 590 532 2312 111 0 0 chrX 31799331 31799629 -145174511 + AluSx SINE Alu 2 299 -13 1320 223 83 85 chrX 31799629 31800160 -145173980 - MLT1G LTR MaLR -58 532 1 1827 112 98 7 chrX 31800196 31800481 -145173659 - AluSx SINE Alu -1 311 1 1617 90 5 5 chrX 31802648 31802860 -145171280 - AluSq SINE Alu -101 212 1 273 228 0 76 chrX 31803349 31803428 -145170712 + L2 LINE L2 3184 3256 -16 210 118 0 0 chrX 31803430 31803464 -145170676 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 1746 110 0 0 chrX 31803699 31803955 -145170185 + AluSx SINE Alu 58 313 0 2300 79 10 13 chrX 31804129 31804298 -145169842 - AluSc SINE Alu -6 303 134 2423 89 0 3 chrX 31804298 31804602 -145169538 - AluSx SINE Alu -9 303 1 2300 79 10 13 chrX 31804602 31804736 -145169404 - AluSc SINE Alu -175 134 1 598 218 16 0 chrX 31804737 31804861 -145169279 - MER105 DNA DNA -16 188 63 1945 173 76 47 chrX 31804867 31805055 -145169085 - LTR54B LTR ERV1 -11 487 306 2267 68 41 3 chrX 31805055 31805347 -145168793 - AluY SINE Alu -7 304 2 1945 173 76 47 chrX 31805347 31805631 -145168509 - LTR54B LTR ERV1 -192 306 1 2790 164 37 41 chrX 31805645 31806013 -145168127 - MLT2B2 LTR ERVL 0 515 148 2188 133 0 0 chrX 31806013 31806315 -145167825 - AluSx SINE Alu -10 302 1 2790 164 37 41 chrX 31806315 31806463 -145167677 - MLT2B2 LTR ERVL -367 148 1 253 329 13 34 chrX 31806648 31806680 -145167460 - L1ME LINE L1 -251 5870 5839 2353 84 0 3 chrX 31806680 31806976 -145167164 - AluSq SINE Alu -18 295 1 253 329 13 34 chrX 31806976 31807092 -145167048 - L1ME LINE L1 -282 5839 5725 1272 187 17 0 chrX 31807390 31807620 -145166520 - L1MC1 LINE L1 0 6333 6100 667 102 0 0 chrX 31807638 31807726 -145166414 + AluSq/x SINE Alu 23 110 -202 4793 116 0 21 chrX 31807756 31808474 -145165666 - L1MC1 LINE L1 -263 6070 5368 2361 99 0 3 chrX 31808480 31808783 -145165357 - AluSx SINE Alu -10 302 1 2198 101 7 13 chrX 31809665 31809963 -145164177 + AluSx SINE Alu 1 296 -16 2443 97 0 0 chrX 31810620 31810929 -145163211 - AluSx SINE Alu -3 309 1 311 349 79 7 chrX 31810979 31811131 -145163009 + MIR3 SINE MIR 4 166 -42 680 284 57 5 chrX 31811645 31811856 -145162284 - MIR SINE MIR -12 250 29 320 152 90 59 chrX 31811880 31811941 -145162199 - L1MD3 LINE L1 -1 8041 7983 2177 119 7 0 chrX 31811941 31812234 -145161906 + AluSx SINE Alu 1 295 -17 320 152 90 59 chrX 31812234 31812320 -145161820 - L1MD3 LINE L1 -59 7983 7880 243 200 18 18 chrX 31812329 31812384 -145161756 + (CATA)n Simple_repeat Simple_repeat 2 56 0 2575 200 32 14 chrX 31812384 31812943 -145161197 - L1MC4 LINE L1 -131 7911 7343 2097 96 50 0 chrX 31814992 31815273 -145158867 + AluSg SINE Alu 1 295 -15 1829 103 48 48 chrX 31815633 31815928 -145158212 + AluSx SINE Alu 16 310 0 2343 94 0 0 chrX 31815928 31816227 -145157913 + AluSg SINE Alu 2 300 -10 2712 288 55 20 chrX 31816476 31817290 -145156850 + L1M4b LINE L1 1 843 -6016 820 76 51 0 chrX 31817308 31817426 -145156714 - MSTA LTR MaLR -304 124 1 551 270 44 26 chrX 31817436 31817689 -145156451 - L1MEc LINE L1 -4416 2031 1753 990 120 126 23 chrX 31817692 31817867 -145156273 + MSTA LTR MaLR 232 424 -4 2214 191 212 41 chrX 31817872 31818267 -145155873 + L1MB8 LINE L1 3650 3976 -2170 2418 92 0 3 chrX 31818267 31818573 -145155567 - AluSx SINE Alu -5 307 3 2214 191 212 41 chrX 31818573 31818926 -145155214 + L1MB8 LINE L1 3976 4526 -1620 4318 165 37 49 chrX 31818928 31820193 -145153947 + L1MB8 LINE L1 4898 6177 -1 2362 104 0 0 chrX 31820205 31820504 -145153636 + AluSx SINE Alu 1 299 -13 737 217 18 6 chrX 31820611 31820895 -145153245 - MLT1A1 LTR MaLR 0 365 1 1600 200 3 29 chrX 31821013 31821323 -145152817 - AluJo SINE Alu -10 302 1 253 169 12 24 chrX 31822743 31822826 -145151314 - L1ME4a LINE L1 -3 6118 6037 2480 90 3 0 chrX 31823085 31823397 -145150743 + AluSq SINE Alu 1 313 0 522 258 13 26 chrX 31823398 31823549 -145150591 + MER5A DNA MER1_type 40 188 -1 3310 172 22 13 chrX 31823617 31824250 -145149890 + L1MB3 LINE L1 5508 6146 -37 2305 108 0 0 chrX 31824251 31824547 -145149593 - AluSx SINE Alu -16 296 1 181 0 0 0 chrX 31824570 31824590 -145149550 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2046 89 18 18 chrX 31824590 31824872 -145149268 - AluSx SINE Alu -1 301 1 288 0 0 0 chrX 31824916 31824948 -145149192 + (CA)n Simple_repeat Simple_repeat 2 33 0 2117 70 13 57 chrX 31825144 31825208 -145148932 + L1PA11 LINE L1 5873 5938 -236 2226 92 3 22 chrX 31825208 31825525 -145148615 + AluSx SINE Alu 1 311 -1 2444 45 0 11 chrX 31825529 31825868 -145148272 + AluY SINE Alu 1 336 0 2117 70 13 57 chrX 31825868 31826112 -145148028 + L1PA11 LINE L1 5941 6173 -1 2236 83 27 7 chrX 31826907 31827208 -145146932 - AluY SINE Alu 0 311 5 4033 130 8 0 chrX 31827213 31827923 -145146217 - L1P LINE L1 -742 5426 4711 1005 168 0 0 chrX 31827923 31828072 -145146068 + AluJb SINE Alu 136 284 -28 2302 95 9 25 chrX 31828123 31828440 -145145700 + AluSq SINE Alu 1 312 -1 523 235 30 12 chrX 31828584 31828750 -145145390 - L1ME4a LINE L1 -2 6119 5951 24 32 0 0 chrX 31829106 31829137 -145145003 + AT_rich Low_complexity Low_complexity 1 31 0 258 33 0 0 chrX 31829294 31829324 -145144816 - LTR6A LTR ERV1 -462 102 73 399 21 0 0 chrX 31830231 31830279 -145143861 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 350 170 0 0 chrX 31830296 31830349 -145143791 + Alu SINE Alu 1 53 -249 885 146 51 0 chrX 31830373 31830510 -145143630 - AluSq/x SINE Alu -169 144 1 24 0 0 0 chrX 31830564 31830588 -145143552 + AT_rich Low_complexity Low_complexity 1 24 0 194 59 39 39 chrX 31830971 31831022 -145143118 + (TTTTG)n Simple_repeat Simple_repeat 2 52 0 3013 184 45 33 chrX 31831031 31831633 -145142507 + MLT1E2 LTR MaLR 1 609 -17 2296 100 0 3 chrX 31831747 31832047 -145142093 + AluSg SINE Alu 7 305 -5 2313 104 0 0 chrX 31832271 31832569 -145141571 - AluSx SINE Alu -14 298 1 1252 105 0 6 chrX 31832604 31832775 -145141365 + AluSg/x SINE Alu 135 304 -6 363 136 0 0 chrX 31832775 31832834 -145141306 + (TA)n Simple_repeat Simple_repeat 2 60 0 628 183 78 73 chrX 31833899 31833967 -145140173 + L1MC4 LINE L1 7290 7356 -686 2730 33 0 0 chrX 31833967 31834268 -145139872 - AluY SINE Alu -9 302 2 628 183 78 73 chrX 31834268 31834390 -145139750 + L1MC4 LINE L1 7356 7481 -561 585 231 82 0 chrX 31834395 31834529 -145139611 + FRAM SINE Alu 16 160 -16 1419 204 22 108 chrX 31834532 31834736 -145139404 + L1MC4 LINE L1 7510 7730 -312 2378 99 3 0 chrX 31834736 31835039 -145139101 + AluSp SINE Alu 1 304 -9 1419 204 22 108 chrX 31835039 31835417 -145138723 + L1MC4 LINE L1 7730 8042 0 255 220 64 155 chrX 31836688 31836952 -145137188 - L1MC4 LINE L1 -3 8039 7800 726 231 48 102 chrX 31836996 31837070 -145137070 - L1MC4 LINE L1 -140 7902 7826 2327 88 3 3 chrX 31837070 31837364 -145136776 - AluSp SINE Alu -19 294 1 726 231 48 102 chrX 31837364 31837432 -145136708 - L1MC4 LINE L1 -216 7826 7756 2322 81 10 0 chrX 31837432 31837729 -145136411 - AluSx SINE Alu -12 300 1 726 231 48 102 chrX 31837729 31837919 -145136221 - L1MC4 LINE L1 -286 7756 7587 2133 113 3 0 chrX 31837922 31838249 -145135891 - AluSx SINE Alu 0 328 1 2263 100 3 3 chrX 31838282 31838581 -145135559 - AluSq SINE Alu -14 299 1 274 233 56 11 chrX 31838719 31838809 -145135331 + MIR SINE MIR 78 171 -91 506 279 8 0 chrX 31838818 31838947 -145135193 + L1ME LINE L1 5541 5670 -451 835 87 0 2 chrX 31838950 31839193 -145134947 + AluSx SINE Alu 1 292 -18 1596 94 153 8 chrX 31839406 31839660 -145134480 + AluSx SINE Alu 2 292 -10 1048 175 0 41 chrX 31840100 31840126 -145134014 + AluJb SINE Alu 114 140 -172 1473 157 108 31 chrX 31840126 31840413 -145133727 + AluJo SINE Alu 1 309 -3 2241 97 10 3 chrX 31840413 31840711 -145133429 + AluSp SINE Alu 1 301 -12 1048 175 0 41 chrX 31840711 31840877 -145133263 + AluJb SINE Alu 138 299 -13 1974 135 35 0 chrX 31840939 31841228 -145132912 + AluSx SINE Alu 1 299 -13 2106 125 0 0 chrX 31841242 31841572 -145132568 - AluSx SINE Alu 0 312 1 878 158 0 0 chrX 31841601 31841734 -145132406 - AluSq/x SINE Alu -180 133 1 275 163 65 76 chrX 31841735 31841827 -145132313 - L1MEd LINE L1 -3795 2334 2244 2066 108 16 32 chrX 31841874 31842189 -145131951 - AluSq SINE Alu -3 310 1 254 237 0 0 chrX 31842189 31842248 -145131892 + L1M4c LINE L1 1631 1689 -4695 2489 79 0 0 chrX 31842420 31842723 -145131417 + AluSx SINE Alu 1 303 -9 2179 98 3 17 chrX 31842725 31843020 -145131120 + AluSg SINE Alu 3 293 -17 1035 200 6 0 chrX 31843075 31843255 -145130885 + MLT1A1 LTR MaLR 185 365 0 2177 121 0 0 chrX 31843269 31843558 -145130582 - AluSx SINE Alu -23 289 1 784 263 87 70 chrX 31843561 31844044 -145130096 - L1MEd LINE L1 -5595 524 6 517 265 83 28 chrX 31844053 31844234 -145129906 - MIR SINE MIR -71 191 1 314 368 78 0 chrX 31844741 31844983 -145129157 - L3 LINE CR1 -1130 447 187 2113 87 47 10 chrX 31845101 31845399 -145128741 + AluSg SINE Alu 2 310 0 514 293 58 23 chrX 31845605 31845864 -145128276 - L2 LINE L2 0 3313 3046 651 281 52 0 chrX 31845886 31846078 -145128062 + L2 LINE L2 2020 2221 -1093 1917 229 37 27 chrX 31846160 31846672 -145127468 - LTR40a LTR ERVL -1 518 2 228 67 0 0 chrX 31846724 31846754 -145127386 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2237 69 43 0 chrX 31846757 31847034 -145127106 - AluY SINE Alu -22 289 1 1638 226 91 71 chrX 31847050 31847288 -145126852 + L1MC5 LINE L1 6047 6279 -1529 1730 133 104 0 chrX 31847288 31847407 -145126733 + AluJb SINE Alu 1 106 -206 405 0 0 0 chrX 31847407 31847452 -145126688 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 1730 133 104 0 chrX 31847452 31847602 -145126538 + AluJb SINE Alu 106 298 -14 1638 226 91 71 chrX 31847602 31848352 -145125788 + L1MC5 LINE L1 6279 6937 -871 1263 245 30 19 chrX 31848353 31848724 -145125416 + L2 LINE L2 2213 2587 -727 489 177 0 13 chrX 31848806 31848885 -145125255 + AluJ/FLAM SINE Alu 2 79 -233 909 259 12 16 chrX 31849102 31849357 -145124783 + LTR16A LTR ERVL 174 427 -23 2221 116 3 7 chrX 31849399 31849701 -145124439 - AluSx SINE Alu -11 301 1 261 289 70 28 chrX 31849917 31850059 -145124081 + MER89 LTR ERV1 383 530 -29 250 293 93 40 chrX 31850123 31850273 -145123867 + L2 LINE L2 3155 3312 -1 185 311 14 14 chrX 31850273 31850347 -145123793 - L2 LINE L2 -277 3036 2963 1972 110 10 20 chrX 31850982 31851310 -145122830 + AluSx SINE Alu 1 312 0 1261 97 0 0 chrX 31851310 31851499 -145122641 + AluSq SINE Alu 134 322 0 358 243 171 62 chrX 31851508 31851668 -145122472 - HAL1 LINE L1 -6 2501 2360 2228 106 3 0 chrX 31851668 31851983 -145122157 - AluSp SINE Alu 0 316 1 358 243 171 62 chrX 31851983 31852005 -145122135 - HAL1 LINE L1 -147 2360 2342 279 0 0 0 chrX 31852005 31852036 -145122104 + (TTG)n Simple_repeat Simple_repeat 3 33 0 2058 114 0 0 chrX 31852036 31852317 -145121823 - AluSq SINE Alu -32 281 1 358 243 171 62 chrX 31852317 31852435 -145121705 - HAL1 LINE L1 -164 2343 2165 2448 90 0 0 chrX 31852486 31852797 -145121343 + AluSq SINE Alu 1 311 -2 422 247 80 56 chrX 31852813 31852975 -145121165 - HAL1 LINE L1 -1638 869 704 1954 132 3 7 chrX 31853167 31853455 -145120685 + AluSx SINE Alu 1 287 -25 27 29 0 0 chrX 31853455 31853489 -145120651 + AT_rich Low_complexity Low_complexity 1 34 0 206 275 14 14 chrX 31854088 31854157 -145119983 + L2 LINE L2 2465 2533 -781 526 286 61 21 chrX 31854169 31854449 -145119691 + L1MC4a LINE L1 3683 3973 -2173 1918 145 0 24 chrX 31854497 31854793 -145119347 + AluJo SINE Alu 13 301 -11 5188 134 21 37 chrX 31854864 31855279 -145118861 + L1PA16 LINE L1 4631 5051 -1115 2366 97 3 0 chrX 31855279 31855579 -145118561 + AluSp SINE Alu 1 301 -12 5188 134 21 37 chrX 31855579 31856592 -145117548 + L1PA16 LINE L1 5051 6034 -132 2346 117 0 0 chrX 31856592 31856900 -145117240 + AluSq SINE Alu 1 308 -5 5188 134 21 37 chrX 31856900 31857022 -145117118 + L1PA16 LINE L1 6034 6156 -10 1878 118 0 0 chrX 31857073 31857328 -145116812 + AluSq SINE Alu 42 296 -17 829 141 0 0 chrX 31857395 31857523 -145116617 + L1MB3 LINE L1 6045 6172 -11 306 0 0 0 chrX 31857523 31857557 -145116583 + (TG)n Simple_repeat Simple_repeat 1 34 0 510 289 35 59 chrX 31857578 31857990 -145116150 + L1MC4a LINE L1 4029 4411 -1735 2149 106 3 14 chrX 31857990 31858282 -145115858 - AluSx SINE Alu -23 289 1 510 289 35 59 chrX 31858282 31858548 -145115592 + L1MC4a LINE L1 4411 4682 -1464 255 139 0 0 chrX 31858552 31858588 -145115552 + Alu SINE Alu 3 38 -264 40 49 0 0 chrX 31858658 31858719 -145115421 + AT_rich Low_complexity Low_complexity 1 61 0 1945 89 0 4 chrX 31858946 31859193 -145114947 - AluSx SINE Alu -20 292 47 1947 235 105 37 chrX 31859200 31859523 -145114617 + L1MC4a LINE L1 5005 4919 -1227 1951 100 47 27 chrX 31859523 31859824 -145114316 - AluSx SINE Alu -5 307 1 1947 235 105 37 chrX 31859824 31860342 -145113798 + L1MC4a LINE L1 4918 5399 -747 1226 143 19 46 chrX 31860403 31860619 -145113521 - AluSg/x SINE Alu -12 298 89 1185 51 0 0 chrX 31860625 31860762 -145113378 - AluSq/x SINE Alu -176 137 1 1670 157 33 16 chrX 31860959 31861264 -145112876 - 7SLRNA srpRNA srpRNA -6 314 5 2141 101 25 0 chrX 31861499 31861799 -145112341 - AluSx SINE Alu 0 307 1 2426 83 3 6 chrX 31861815 31862127 -145112013 - AluSq SINE Alu -2 311 1 703 101 0 0 chrX 31862259 31862358 -145111782 - AluSx SINE Alu -10 300 202 2558 116 95 48 chrX 31862359 31862819 -145111321 + LTR21A LTR ERV1 3 487 -18 1684 96 0 0 chrX 31862819 31863027 -145111113 - AluSx SINE Alu -103 209 2 2558 116 95 48 chrX 31863027 31863041 -145111099 + LTR21A LTR ERV1 487 499 -6 1185 94 28 6 chrX 31863306 31863487 -145110653 - LTR54 LTR ERV1 0 510 326 824 106 16 16 chrX 31863527 31863650 -145110490 - LTR54 LTR ERV1 -387 123 1 2415 66 3 13 chrX 31863784 31864086 -145110054 - AluSp SINE Alu -14 299 1 192 267 0 0 chrX 31864398 31864458 -145109682 + CT-rich Low_complexity Low_complexity 1 60 0 307 323 11 7 chrX 31864561 31864649 -145109491 + MIR SINE MIR 60 120 -88 2597 50 0 0 chrX 31864649 31864950 -145109190 + AluY SINE Alu 1 301 -10 307 323 11 7 chrX 31864950 31864979 -145109161 + MIR SINE MIR 120 147 -61 373 167 56 0 chrX 31865110 31865182 -145108958 - L1ME2 LINE L1 -228 5936 5861 1496 149 28 93 chrX 31865373 31865488 -145108652 - L1ME2 LINE L1 -363 5801 5680 2450 70 0 7 chrX 31865488 31865789 -145108351 + AluSc SINE Alu 1 299 -10 1496 149 28 93 chrX 31865789 31865886 -145108254 - L1ME2 LINE L1 -484 5680 5615 2187 64 4 25 chrX 31865886 31866166 -145107974 - AluSq SINE Alu -39 274 1 1496 149 28 93 chrX 31866166 31866275 -145107865 - L1ME2 LINE L1 -549 5615 5500 815 155 42 0 chrX 31866332 31866474 -145107666 - AluSx SINE Alu -1 311 164 238 213 0 0 chrX 31866475 31866522 -145107618 + LTR30 LTR ERV1 1 47 -675 936 131 11 165 chrX 31866522 31866789 -145107351 + LTR12 LTR ERV1 48 273 -441 330 239 46 18 chrX 31866793 31866902 -145107238 + LTR30 LTR ERV1 544 655 -67 575 163 0 0 chrX 31866902 31866994 -145107146 + LTR12 LTR ERV1 490 581 -133 1201 79 0 55 chrX 31866994 31867159 -145106981 - AluSx SINE Alu -146 166 11 2126 122 23 0 chrX 31867222 31867526 -145106614 + AluSq SINE Alu 1 311 -2 1227 145 0 0 chrX 31867669 31867848 -145106292 - AluJ SINE Alu -15 297 119 2029 128 17 7 chrX 31867881 31868178 -145105962 - AluSx SINE Alu -12 300 1 841 92 0 92 chrX 31868182 31868313 -145105827 - AluJ SINE Alu -188 124 6 2235 111 0 7 chrX 31868671 31868978 -145105162 - AluSx SINE Alu -2 310 6 1651 169 36 13 chrX 31869134 31869435 -145104705 + AluJo SINE Alu 1 308 -4 2631 32 7 10 chrX 31869530 31869838 -145104302 + AluY SINE Alu 1 307 -4 246 149 35 0 chrX 31870121 31870208 -145103932 + (TA)n Simple_repeat Simple_repeat 1 90 0 2163 123 0 0 chrX 31870209 31870501 -145103639 - AluSq SINE Alu -20 293 2 2299 97 0 0 chrX 31870741 31871030 -145103110 + AluSc SINE Alu 3 291 -18 27 73 0 0 chrX 31871030 31871085 -145103055 + AT_rich Low_complexity Low_complexity 1 55 0 2532 76 0 0 chrX 31871260 31871564 -145102576 - AluSg SINE Alu -6 304 1 1869 93 0 4 chrX 31872259 31872495 -145101645 + AluSp SINE Alu 62 296 -17 180 111 0 0 chrX 31872538 31872565 -145101575 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 252 288 75 0 chrX 31872566 31872646 -145101494 - L2 LINE L2 -25 3288 3203 2181 131 0 3 chrX 31872828 31873141 -145100999 - AluSx SINE Alu 0 312 1 1031 239 88 54 chrX 31873192 31873217 -145100923 + Charlie8 DNA MER1_type 86 109 -2308 261 0 0 0 chrX 31873217 31873246 -145100894 + (CA)n Simple_repeat Simple_repeat 1 29 0 1031 239 88 54 chrX 31873246 31873572 -145100568 + Charlie8 DNA MER1_type 109 449 -1968 2327 109 3 0 chrX 31873621 31873925 -145100215 - AluSx SINE Alu -7 305 1 185 267 13 27 chrX 31873940 31874015 -145100125 - L2 LINE L2 -264 3008 2935 853 137 0 8 chrX 31874302 31874433 -145099707 - AluSg/x SINE Alu -96 214 85 249 273 68 25 chrX 31874611 31874772 -145099368 + L1MC4a LINE L1 6064 6231 -1577 1001 227 22 4 chrX 31874853 31875078 -145099062 + L1M4 LINE L1 16 244 -6298 * 1238 201 7 37 chrX 31875076 31875375 -145098765 + L1M4 LINE L1 3151 3440 -3204 2175 108 57 0 chrX 31875380 31875676 -145098464 + AluSp SINE Alu 1 313 0 1676 153 34 30 chrX 31875721 31876016 -145098124 - AluSx SINE Alu -16 296 1 1807 154 14 10 chrX 31876052 31876345 -145097795 - AluJb SINE Alu -18 294 1 1115 250 32 40 chrX 31876378 31876449 -145097691 + L1MC4 LINE L1 6696 6766 -1276 1761 88 9 0 chrX 31876449 31876675 -145097465 + AluSg/x SINE Alu 72 299 -13 1115 250 32 40 chrX 31876675 31876728 -145097412 + L1MC4 LINE L1 6766 6818 -1224 2296 80 10 3 chrX 31876728 31877029 -145097111 + AluSc SINE Alu 1 303 -6 1115 250 32 40 chrX 31877029 31877275 -145096865 + L1MC4 LINE L1 6818 7064 -978 2352 102 0 0 chrX 31877345 31877649 -145096491 + AluSx SINE Alu 4 307 -5 1644 136 4 0 chrX 31877734 31877984 -145096156 + L1PA16 LINE L1 5907 6157 -9 29 0 0 25 chrX 31878132 31878152 -145095988 + AT_rich Low_complexity Low_complexity 1 20 -19 2295 73 0 27 chrX 31878152 31878453 -145095687 + AluY SINE Alu 1 293 -18 29 0 0 25 chrX 31878453 31878472 -145095668 + AT_rich Low_complexity Low_complexity 20 39 0 2579 57 0 3 chrX 31878476 31878776 -145095364 + AluSp SINE Alu 1 299 -14 2099 124 0 3 chrX 31878869 31879190 -145094950 + AluSx SINE Alu 3 322 0 1803 201 111 65 chrX 31879210 31879461 -145094679 + MLT1E3 LTR MaLR 1 239 -385 2308 97 0 0 chrX 31879461 31879750 -145094390 + AluSx SINE Alu 1 289 -23 1803 201 111 65 chrX 31879750 31880095 -145094045 + MLT1E3 LTR MaLR 239 624 0 320 306 0 0 chrX 31880099 31880184 -145093956 + L1MC5 LINE L1 7034 7118 -843 261 136 114 0 chrX 31880189 31880233 -145093907 - MER41E LTR ERV1 -147 365 317 21 0 0 0 chrX 31880292 31880313 -145093827 + AT_rich Low_complexity Low_complexity 1 21 0 652 163 42 202 chrX 31880313 31880674 -145093466 + L1MC5 LINE L1 7127 7429 -532 258 237 76 23 chrX 31880690 31880821 -145093319 + L1MC5 LINE L1 7508 7645 -316 2038 92 4 0 chrX 31880828 31881089 -145093051 - AluSx SINE Alu -15 297 36 2179 112 13 16 chrX 31881089 31881401 -145092739 + AluSx SINE Alu 2 312 0 499 274 25 0 chrX 31881401 31881558 -145092582 + L1MC5 LINE L1 7701 7861 -100 753 206 7 0 chrX 31881643 31881779 -145092361 - MER4C LTR ERV1 0 465 329 423 107 0 0 chrX 31881779 31881874 -145092266 - Alu SINE Alu 0 321 227 2182 105 3 46 chrX 31881876 31882200 -145091940 - AluSq SINE Alu -3 310 1 248 102 20 0 chrX 31882263 31882312 -145091828 + (TTTTTG)n Simple_repeat Simple_repeat 1 50 0 2548 76 0 0 chrX 31882513 31882817 -145091323 - AluSq SINE Alu -9 304 1 180 0 0 0 chrX 31882945 31882965 -145091175 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2283 80 0 17 chrX 31883127 31883426 -145090714 + AluSc SINE Alu 16 309 0 1001 149 82 16 chrX 31883433 31883627 -145090513 + L1MB2 LINE L1 5959 6165 -6 765 288 107 6 chrX 31883688 31884144 -145089996 + L1ME3A LINE L1 5317 5951 -219 * 2153 128 53 60 chrX 31884138 31884537 -145089603 + L1MB2 LINE L1 5721 6118 -53 1530 127 60 0 chrX 31884537 31884784 -145089356 + L1MA5A LINE L1 6028 6294 -3 2153 128 53 60 chrX 31884784 31884799 -145089341 + L1MB2 LINE L1 6118 6132 -39 2122 140 0 0 chrX 31884992 31885299 -145088841 - AluSx SINE Alu -5 307 1 659 34 34 0 chrX 31885299 31885387 -145088753 + (TTTTC)n Simple_repeat Simple_repeat 2 92 0 1630 151 3 72 chrX 31885387 31885691 -145088449 - AluJb SINE Alu -29 283 1 2360 93 0 34 chrX 31885762 31885905 -145088235 + AluSx SINE Alu 1 147 -165 2193 109 14 0 chrX 31885905 31886199 -145087941 + AluSx SINE Alu 1 298 -14 2360 93 0 34 chrX 31886199 31886378 -145087762 + AluSx SINE Alu 147 312 0 2344 78 0 0 chrX 31886522 31886833 -145087307 - AluSp SINE Alu 0 311 1 2356 105 0 9 chrX 31886838 31887153 -145086987 - AluSx SINE Alu 0 312 1 1864 163 0 3 chrX 31887176 31887476 -145086664 - AluJo SINE Alu -13 299 1 24 32 0 0 chrX 31887476 31887507 -145086633 + AT_rich Low_complexity Low_complexity 1 31 0 2256 78 3 40 chrX 31887508 31887829 -145086311 + AluY SINE Alu 1 309 -2 504 191 34 27 chrX 31887845 31887992 -145086148 + L1M4 LINE L1 4298 4445 -1701 505 328 48 38 chrX 31888152 31888445 -145085695 - L2 LINE L2 -1930 1384 1089 352 293 5 66 chrX 31888476 31888674 -145085466 - L2 LINE L2 -2737 577 392 1408 142 0 43 chrX 31888674 31888787 -145085353 + AluJo SINE Alu 11 110 -202 2373 81 0 26 chrX 31888787 31889096 -145085044 - AluSg SINE Alu -9 301 1 1408 142 0 43 chrX 31889096 31889215 -145084925 + AluJo SINE Alu 110 233 -79 2352 88 0 0 chrX 31889451 31889758 -145084382 + AluSc SINE Alu 1 307 -2 729 175 0 132 chrX 31889812 31890001 -145084139 - FRAM SINE Alu -12 164 1 789 176 53 74 chrX 31890002 31890069 -145084071 + L1ME3A LINE L1 5700 5767 -403 474 108 0 0 chrX 31890069 31890143 -145083997 + (TA)n Simple_repeat Simple_repeat 2 75 0 2608 64 0 0 chrX 31890147 31890458 -145083682 - AluY SINE Alu 0 311 1 789 176 53 74 chrX 31890458 31890587 -145083553 + L1ME3A LINE L1 5770 5900 -270 2363 82 3 0 chrX 31890587 31890879 -145083261 + AluSg SINE Alu 1 293 -17 789 176 53 74 chrX 31890879 31890910 -145083230 + L1ME3A LINE L1 5900 5930 -240 1009 219 57 0 chrX 31890910 31891120 -145083020 + MER58A DNA MER1_type 2 223 -1 429 240 10 0 chrX 31891147 31891247 -145082893 - L1ME2 LINE L1 -9 6155 6055 384 136 0 0 chrX 31891255 31891314 -145082826 + L1ME3A LINE L1 5920 5978 -192 2194 46 4 39 chrX 31891420 31891700 -145082440 - AluY SINE Alu -14 297 28 2014 114 3 23 chrX 31891749 31892048 -145082092 + AluJb SINE Alu 1 293 -19 2337 88 0 7 chrX 31892173 31892481 -145081659 + AluY SINE Alu 5 310 -1 1277 151 13 53 chrX 31892564 31892789 -145081351 + MER20 DNA MER1_type 3 218 -1 1526 87 0 5 chrX 31892909 31893104 -145081036 + AluSg/x SINE Alu 115 308 -2 549 188 45 0 chrX 31893141 31893253 -145080887 + MER3 DNA MER1_type 50 166 -43 1085 151 0 0 chrX 31893276 31893428 -145080712 - AluJb SINE Alu -27 285 134 2045 138 0 7 chrX 31893428 31893732 -145080408 - AluJo SINE Alu -9 303 2 247 119 191 0 chrX 31893734 31893776 -145080364 + MER3 DNA MER1_type 159 208 -1 230 219 0 0 chrX 31893747 31893788 -145080352 - MER3 DNA MER1_type -132 77 37 * 507 235 12 54 chrX 31893833 31893938 -145080202 + MIR SINE MIR 74 171 -91 2207 101 24 0 chrX 31893938 31894225 -145079915 + AluSx SINE Alu 1 294 -18 507 235 12 54 chrX 31894225 31894285 -145079855 + MIR SINE MIR 171 232 -30 2338 74 3 23 chrX 31894481 31894806 -145079334 - AluSp SINE Alu 0 313 1 2148 129 0 7 chrX 31894869 31895171 -145078969 + AluSx SINE Alu 1 300 -12 249 189 22 56 chrX 31895211 31895301 -145078839 - L1MC5 LINE L1 -33 7928 7842 332 147 105 53 chrX 31895334 31895429 -145078711 - L1MC5 LINE L1 -30 7931 7832 193 29 29 29 chrX 31895557 31895592 -145078548 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1448 122 5 32 chrX 31895596 31895817 -145078323 - AluJo SINE Alu -16 296 82 405 271 98 25 chrX 31895819 31896055 -145078085 - L1M4 LINE L1 -2268 3878 3626 21 0 0 0 chrX 31896055 31896076 -145078064 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chrX 31896091 31896114 -145078026 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 3053 25 6 0 chrX 31896117 31896473 -145077667 - L1PA4 LINE L1 -3 6152 5795 534 46 0 0 chrX 31896473 31896538 -145077602 + L1PA4 LINE L1 5744 5808 -347 2185 111 3 0 chrX 31896649 31896937 -145077203 - AluSp SINE Alu -24 289 1 2333 102 0 0 chrX 31897375 31897668 -145076472 - AluSg SINE Alu -17 293 1 2184 103 0 0 chrX 31897847 31898154 -145075986 - AluSg SINE Alu 0 307 1 1782 174 24 10 chrX 31898172 31898466 -145075674 + AluJb SINE Alu 1 298 -14 334 237 153 23 chrX 31898479 31898610 -145075530 - HAL1 LINE L1 -828 1679 1532 2185 108 0 3 chrX 31898736 31899046 -145075094 - AluSx SINE Alu 0 309 1 2382 100 3 3 chrX 31899150 31899459 -145074681 - AluSg SINE Alu -1 309 1 2217 101 27 0 chrX 31899516 31899813 -145074327 - AluSx SINE Alu -7 305 1 858 150 0 0 chrX 31899831 31899958 -145074182 - FLAM_C SINE Alu -16 127 1 1316 71 12 0 chrX 31900084 31900253 -145073887 - AluSx SINE Alu -16 296 126 1919 165 3 7 chrX 31900253 31900562 -145073578 - AluJb SINE Alu -4 308 1 22 80 0 0 chrX 31900571 31900621 -145073519 + AT_rich Low_complexity Low_complexity 1 50 0 290 235 0 12 chrX 31900660 31900745 -145073395 - L1ME4a LINE L1 -77 6044 5961 3428 94 29 12 chrX 31900853 31901365 -145072775 - L1MA5A LINE L1 -4 6293 5773 2211 91 7 26 chrX 31902097 31902406 -145071734 - AluSq SINE Alu -8 305 3 1183 73 0 0 chrX 31902407 31902543 -145071597 - AluSx SINE Alu -177 136 1 265 256 11 44 chrX 31902858 31902948 -145071192 + L2 LINE L2 3174 3260 -12 2271 117 0 0 chrX 31903202 31903509 -145070631 - AluSg SINE Alu -2 308 2 978 109 8 0 chrX 31904198 31904326 -145069814 - FLAM_C SINE Alu -10 133 5 206 242 0 15 chrX 31904529 31904595 -145069545 + MIR SINE MIR 156 220 -42 1901 145 0 0 chrX 31904806 31905075 -145069065 + AluJo SINE Alu 1 269 -43 1008 223 161 56 chrX 31905140 31905588 -145068552 - MLT1G LTR MaLR -7 583 89 2260 129 6 0 chrX 31905602 31905928 -145068212 - MER51B LTR ERV1 0 377 50 386 121 277 12 chrX 31905944 31906027 -145068113 - MER51A LTR ERV1 -529 105 1 743 158 8 0 chrX 31906089 31906209 -145067931 - MLT1G LTR MaLR -472 123 3 2371 108 0 0 chrX 31906309 31906616 -145067524 - AluSq SINE Alu -6 307 1 2248 101 3 19 chrX 31906737 31907044 -145067096 - AluSg SINE Alu -8 302 1 2254 105 3 0 chrX 31907084 31907378 -145066762 + AluSq SINE Alu 3 297 -16 554 174 101 22 chrX 31907419 31907557 -145066583 + MER3 DNA MER1_type 25 126 -83 1987 149 45 0 chrX 31907574 31907949 -145066191 + MER3 DNA MER1_type 2233 2624 0 342 200 108 83 chrX 31908307 31908387 -145065753 - MIR3 SINE MIR -21 187 102 2403 94 0 0 chrX 31908387 31908685 -145065455 + AluSg SINE Alu 1 298 -12 342 200 108 83 chrX 31908685 31908724 -145065416 - MIR3 SINE MIR -106 102 65 2199 113 0 0 chrX 31908937 31909228 -145064912 - AluSx SINE Alu 0 312 22 1344 169 9 17 chrX 31909646 31909960 -145064180 - MLT1A1 LTR MaLR 0 365 1 2726 101 3 11 chrX 31910033 31910411 -145063729 + THE1C LTR MaLR 1 375 0 10322 100 42 39 chrX 31910411 31911986 -145062154 + THE1C-int LTR MaLR 1 1580 0 2066 127 3 22 chrX 31911986 31912302 -145061838 + THE1C LTR MaLR 1 310 -65 2271 105 7 0 chrX 31912302 31912627 -145061513 - AluSg SINE Alu 0 310 1 1048 128 29 0 chrX 31912627 31912799 -145061341 + L1MB4 LINE L1 6004 6180 0 2147 116 10 3 chrX 31912831 31913134 -145061006 + AluSx SINE Alu 1 305 -7 1047 209 45 11 chrX 31913520 31913788 -145060352 + L1MC5 LINE L1 7637 7913 -48 2162 121 0 0 chrX 31913859 31914149 -145059991 + AluSx SINE Alu 1 290 -22 369 329 61 32 chrX 31914205 31914482 -145059658 + L1MC4a LINE L1 5100 5384 -762 1114 196 104 57 chrX 31914516 31914598 -145059542 - MER2 DNA MER2_type -10 335 258 1614 97 0 31 chrX 31914598 31914825 -145059315 + AluY SINE Alu 92 311 0 1114 196 104 57 chrX 31914825 31915059 -145059081 - MER2 DNA MER2_type -87 258 4 2177 99 0 24 chrX 31915079 31915409 -145058731 + AluSx SINE Alu 1 323 0 947 281 73 47 chrX 31915433 31915498 -145058642 + L1MC4a LINE L1 5404 5466 -2342 2002 92 6 74 chrX 31915498 31915824 -145058316 + AluSx SINE Alu 1 304 -8 947 281 73 47 chrX 31915824 31916253 -145057887 + L1MC4a LINE L1 5466 5911 -1897 276 100 0 0 chrX 31916767 31916807 -145057333 + (TG)n Simple_repeat Simple_repeat 1 40 0 1817 119 0 0 chrX 31916943 31917186 -145056954 - AluSx SINE Alu -69 243 1 36 0 0 0 chrX 31917226 31917262 -145056878 + AT_rich Low_complexity Low_complexity 1 36 0 2180 107 4 0 chrX 31917267 31917585 -145056555 + AluSq SINE Alu 4 322 0 1899 126 4 0 chrX 31917674 31917936 -145056204 + AluJb SINE Alu 1 263 -49 180 0 0 0 chrX 31917945 31917965 -145056175 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 994 276 89 20 chrX 31918102 31918494 -145055646 - MLT1L LTR MaLR -22 593 175 268 330 39 35 chrX 31918567 31918770 -145055370 + L2 LINE L2 2326 2529 -785 956 252 96 37 chrX 31918887 31919375 -145054765 - L1ME4a LINE L1 -4 6117 5601 249 242 15 0 chrX 31919432 31919498 -145054642 - L1MC4 LINE L1 -49 7993 7927 699 278 125 34 chrX 31919672 31919889 -145054251 - L1ME3A LINE L1 -208 5962 5766 2144 93 6 47 chrX 31919889 31920211 -145053929 - AluSg SINE Alu -1 309 1 699 278 125 34 chrX 31920211 31920410 -145053730 - L1ME3A LINE L1 -404 5766 5508 1867 118 30 43 chrX 31920532 31920836 -145053304 - AluSx SINE Alu -12 300 1 239 216 24 104 chrX 31920908 31920964 -145053176 - L1ME4a LINE L1 0 6121 6079 2390 94 7 0 chrX 31920964 31921273 -145052867 + AluSp SINE Alu 1 311 -2 239 216 24 104 chrX 31921273 31921341 -145052799 - L1ME4a LINE L1 -42 6079 6007 * 566 161 55 9 chrX 31921340 31921468 -145052672 + L1MA7 LINE L1 6145 6265 -26 2057 73 26 15 chrX 31921475 31921748 -145052392 - AluSq SINE Alu -8 305 30 1003 149 9 113 chrX 31921756 31921919 -145052221 - AluJo SINE Alu -23 289 111 225 0 0 0 chrX 31921919 31921944 -145052196 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2249 85 0 0 chrX 31921945 31922227 -145051913 - AluSp SINE Alu -31 282 1 1003 149 9 113 chrX 31922227 31922283 -145051857 - AluJo SINE Alu -200 112 91 222 271 45 90 chrX 31923173 31923328 -145050812 + L2 LINE L2 2596 2743 -571 1117 82 0 0 chrX 31923336 31923470 -145050670 + AluSg1 SINE Alu 2 135 -174 2268 79 4 0 chrX 31923470 31923789 -145050351 + AluY SINE Alu 1 320 0 208 325 99 42 chrX 31923838 31924029 -145050111 + L2 LINE L2 2815 3016 -256 2143 120 0 3 chrX 31924100 31924391 -145049749 + AluSx SINE Alu 1 290 -22 341 198 66 11 chrX 31924406 31924497 -145049643 + L1MC4 LINE L1 7289 7384 -658 * 2277 159 10 12 chrX 31924466 31924868 -145049272 + L1PB3 LINE L1 3787 4187 -1959 1109 83 0 0 chrX 31924869 31925001 -145049139 + AluSq/x SINE Alu 1 132 -181 2061 117 32 0 chrX 31925001 31925283 -145048857 + AluSx SINE Alu 6 296 -16 5551 164 23 14 chrX 31925283 31925491 -145048649 + L1PB3 LINE L1 4178 4383 -1771 2319 98 0 3 chrX 31925491 31925797 -145048343 + AluSg SINE Alu 1 305 -5 5551 164 23 14 chrX 31925797 31926887 -145047253 + L1PB3 LINE L1 4383 5485 -669 1876 85 101 0 chrX 31926887 31927187 -145046953 + AluSx SINE Alu 1 326 0 1215 114 6 0 chrX 31927187 31927363 -145046777 + AluSq SINE Alu 134 310 -3 4527 107 16 15 chrX 31927368 31927803 -145046337 + L1PB3 LINE L1 5477 5915 -239 2268 88 0 56 chrX 31927803 31928123 -145046017 - AluSx SINE Alu -10 302 1 4527 107 16 15 chrX 31928123 31928363 -145045777 + L1PB3 LINE L1 5915 6153 -1 1960 232 39 76 chrX 31928367 31928543 -145045597 + L1MC4 LINE L1 7372 7553 -489 2603 58 0 3 chrX 31928543 31928852 -145045288 - AluY SINE Alu -3 308 1 1960 232 39 76 chrX 31928852 31929372 -145044768 + L1MC4 LINE L1 7553 8042 0 192 77 0 0 chrX 31930056 31930082 -145044058 + (A)n Simple_repeat Simple_repeat 1 26 0 2446 87 0 3 chrX 31930278 31930590 -145043550 + AluSq SINE Alu 1 311 -2 1718 126 84 0 chrX 31931132 31931394 -145042746 + AluSx SINE Alu 1 284 -28 230 181 340 21 chrX 31933766 31933860 -145040280 + MIR SINE MIR 108 231 -31 1171 99 0 12 chrX 31934053 31934215 -145039925 + AluSc SINE Alu 137 296 -13 203 229 0 0 chrX 31934512 31934547 -145039593 + polypurine Low_complexity Low_complexity 2 36 0 210 71 0 0 chrX 31934850 31934878 -145039262 + (TG)n Simple_repeat Simple_repeat 2 29 0 1246 194 172 58 chrX 31934881 31935083 -145039057 - L1ME1 LINE L1 -3 6163 5985 2363 83 0 3 chrX 31935083 31935385 -145038755 - AluSg SINE Alu -9 301 1 1246 194 172 58 chrX 31935385 31935558 -145038582 - L1ME1 LINE L1 -181 5985 5735 2055 153 30 89 chrX 31935558 31935721 -145038419 - MLT1C LTR MaLR -1 466 295 2544 76 0 0 chrX 31935721 31936024 -145038116 - AluSx SINE Alu -9 303 1 2055 153 30 89 chrX 31936024 31936355 -145037785 - MLT1C LTR MaLR -172 295 1 1246 194 172 58 chrX 31936355 31936391 -145037749 - L1ME1 LINE L1 -431 5735 5704 308 275 108 0 chrX 31936473 31936593 -145037547 - MIR SINE MIR 0 262 130 2300 97 0 0 chrX 31936701 31936999 -145037141 - AluSp SINE Alu -15 298 1 2498 28 0 3 chrX 31937063 31937370 -145036770 - AluY SINE Alu 0 306 1 2138 78 3 21 chrX 31937377 31937616 -145036524 - AluSx SINE Alu 0 372 130 180 0 0 0 chrX 31937616 31937636 -145036504 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2095 97 0 38 chrX 31937636 31937926 -145036214 - AluSg SINE Alu -31 279 1 2138 78 3 21 chrX 31937926 31938027 -145036113 - AluSx SINE Alu -240 132 36 193 0 61 30 chrX 31938111 31938144 -145035996 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2221 89 4 0 chrX 31938146 31938427 -145035713 - AluSp SINE Alu -31 282 1 244 244 76 42 chrX 31938812 31938931 -145035209 - L1MC4 LINE L1 -426 7616 7494 * 405 269 0 0 chrX 31938904 31939012 -145035128 - L1MC5 LINE L1 -543 7418 7311 2015 134 10 3 chrX 31939020 31939312 -145034828 - AluSx SINE Alu -18 294 1 852 218 118 3 chrX 31939312 31939585 -145034555 - L1MC4 LINE L1 -552 7490 7181 362 284 16 8 chrX 31939965 31940092 -145034048 - LTR33A LTR ERVL 0 523 396 2237 103 0 35 chrX 31940300 31940612 -145033528 - AluSx SINE Alu -11 301 1 2368 94 0 3 chrX 31941400 31941697 -145032443 - AluSp SINE Alu -17 296 1 21 0 0 0 chrX 31941706 31941727 -145032413 + AT_rich Low_complexity Low_complexity 1 21 0 439 101 0 0 chrX 31941940 31942009 -145032131 - Alu SINE Alu -1 310 242 1732 255 45 47 chrX 31942019 31942293 -145031847 - L1MC4 LINE L1 -1875 5933 5660 2141 110 3 3 chrX 31942293 31942584 -145031556 + AluSg SINE Alu 1 291 -19 1732 255 45 47 chrX 31942584 31942948 -145031192 - L1MC4 LINE L1 -2148 5660 5296 767 129 0 8 chrX 31943222 31943346 -145030794 - AluJb SINE Alu -188 124 2 2215 110 0 0 chrX 31943358 31943650 -145030490 - AluSg SINE Alu -18 292 1 2259 94 0 0 chrX 31943697 31943984 -145030156 + AluSg SINE Alu 1 287 -23 21 0 0 0 chrX 31944232 31944253 -145029887 + AT_rich Low_complexity Low_complexity 1 21 0 1828 98 0 4 chrX 31944282 31944518 -145029622 - AluSq SINE Alu -78 235 1 2207 160 70 8 chrX 31944573 31944960 -145029180 + MLT2C2 LTR ERVL 1 411 -53 2393 79 3 3 chrX 31944962 31945267 -145028873 - AluSp SINE Alu -8 305 1 2188 88 0 18 chrX 31945604 31945889 -145028251 + AluSx SINE Alu 1 280 -32 317 0 0 65 chrX 31945896 31945942 -145028198 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 2254 105 3 0 chrX 31946121 31946416 -145027724 + AluSq SINE Alu 1 296 -17 2594 53 3 0 chrX 31946419 31946721 -145027419 + AluY SINE Alu 1 303 -8 1147 102 7 0 chrX 31946780 31946927 -145027213 - AluSq/x SINE Alu -165 148 1 2281 97 0 13 chrX 31947110 31947420 -145026720 - AluSc SINE Alu -3 306 1 1497 173 103 0 chrX 31947476 31947747 -145026393 - AluJb SINE Alu -13 299 1 2264 82 3 0 chrX 31947756 31948060 -145026080 - AluSp SINE Alu 0 305 1 238 225 154 50 chrX 31948060 31948242 -145025898 - HAL1b LINE L1 -671 677 477 247 244 65 113 chrX 31948386 31948463 -145025677 - HAL1b LINE L1 -1053 295 216 2237 110 0 13 chrX 31948463 31948772 -145025368 + AluSg SINE Alu 1 305 -5 247 244 65 113 chrX 31948772 31948924 -145025216 - HAL1b LINE L1 -1132 216 77 789 210 34 23 chrX 31949529 31949705 -145024435 - MER45A DNA AcHobo 0 178 1 10977 172 55 41 chrX 31950282 31950644 -145023496 - Cheshire DNA MER1_type -1 2419 2064 2072 103 33 17 chrX 31950644 31950944 -145023196 + AluSx SINE Alu 1 305 -7 10977 172 55 41 chrX 31950944 31951984 -145022156 - Cheshire DNA MER1_type -356 2064 1040 2347 100 0 0 chrX 31951984 31952285 -145021855 - AluSg1 SINE Alu -8 301 1 10977 172 55 41 chrX 31952285 31952577 -145021563 - Cheshire DNA MER1_type -1380 1040 754 2399 88 0 3 chrX 31952577 31952883 -145021257 - AluSc SINE Alu -4 305 1 10977 172 55 41 chrX 31952883 31953169 -145020971 - Cheshire DNA MER1_type -1666 754 474 2092 107 0 7 chrX 31953169 31953479 -145020661 - AluSc SINE Alu 0 308 1 10977 172 55 41 chrX 31953479 31953816 -145020324 - Cheshire DNA MER1_type -1946 474 1 1866 79 26 140 chrX 31954220 31954562 -145019578 - AluSq SINE Alu 0 303 1 1103 149 15 109 chrX 31954738 31954935 -145019205 - L1MDa LINE L1 -4941 1599 1444 2260 115 7 0 chrX 31954935 31955240 -145018900 - AluSx SINE Alu -5 307 1 1103 149 15 109 chrX 31955240 31955371 -145018769 - L1MDa LINE L1 -5096 1444 1302 2009 126 3 11 chrX 31955939 31956248 -145017892 - AluSx SINE Alu 0 307 1 1928 224 90 59 chrX 31956249 31956393 -145017747 - L1MDa LINE L1 -5368 1172 1034 2217 114 7 10 chrX 31956393 31956700 -145017440 - AluSx SINE Alu -6 306 1 1928 224 90 59 chrX 31956700 31957180 -145016960 - L1MDa LINE L1 -5506 1034 529 23 0 0 0 chrX 31957665 31957688 -145016452 + AT_rich Low_complexity Low_complexity 1 23 0 2190 120 0 7 chrX 31957813 31958113 -145016027 - AluSx SINE Alu -14 298 1 415 318 78 12 chrX 31958348 31958545 -145015595 - MIR SINE MIR -52 210 3 271 228 69 13 chrX 31958785 31958870 -145015270 - MIR SINE MIR -88 120 30 2159 41 94 0 chrX 31958955 31959221 -145014919 - AluY SINE Alu -20 291 1 2017 92 44 20 chrX 31959224 31959518 -145014622 - AluSg SINE Alu -9 301 1 291 54 0 0 chrX 31959622 31959659 -145014481 + (TG)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 31960009 31960030 -145014110 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 31960974 31961003 -145013137 + GC_rich Low_complexity Low_complexity 1 29 0 225 139 0 0 chrX 31961560 31961603 -145012537 + (CCG)n Simple_repeat Simple_repeat 3 45 0 180 111 0 0 chrX 31961776 31961803 -145012337 + (CCG)n Simple_repeat Simple_repeat 3 29 0 30 27 0 0 chrX 31962229 31962266 -145011874 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chrX 31963790 31963819 -145010321 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 31964625 31964654 -145009486 + AT_rich Low_complexity Low_complexity 1 29 0 234 322 0 0 chrX 31965080 31965170 -145008970 + L1MC4 LINE L1 6614 6703 -1339 281 307 0 0 chrX 31965177 31965265 -145008875 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chrX 31965226 31965312 -145008828 + L1MC4 LINE L1 6614 6701 -1341 * 1465 119 78 0 chrX 31966283 31966502 -145007638 - MER46A DNA MER2_type 0 236 1 1966 139 7 7 chrX 31966921 31967223 -145006917 - AluSx SINE Alu -10 302 1 2484 87 0 0 chrX 31968092 31968392 -145005748 + AluSx SINE Alu 1 300 -12 2243 109 0 3 chrX 31968710 31969013 -145005127 + AluSx SINE Alu 1 302 -10 2324 80 10 7 chrX 31969354 31969656 -145004484 + AluSg SINE Alu 1 303 -7 2111 132 0 0 chrX 31969885 31970189 -145003951 - AluSq SINE Alu -9 304 1 446 216 216 26 chrX 31970449 31970643 -145003497 - L1MC5 LINE L1 -103 7858 7628 182 272 184 0 chrX 31970972 31971075 -145003065 - L2 LINE L2 -15 3257 3136 1761 147 3 30 chrX 31971267 31971566 -145002574 - AluJb SINE Alu -15 297 7 2209 113 0 3 chrX 31971582 31971875 -145002265 - AluSx SINE Alu -20 292 1 2471 78 3 10 chrX 31972021 31972330 -145001810 + AluSp SINE Alu 3 309 -4 448 292 57 26 chrX 31972619 31972811 -145001329 + MIR SINE MIR 49 246 -16 350 297 226 19 chrX 31973042 31973232 -145000908 + L2 LINE L2 2283 2432 -882 1486 190 37 7 chrX 31973232 31973527 -145000613 - AluJb SINE Alu -8 304 1 350 297 226 19 chrX 31973527 31973602 -145000538 + L2 LINE L2 2432 2603 -711 458 115 0 0 chrX 31973706 31973767 -145000373 + U6 snRNA snRNA 1 61 -46 21 0 0 0 chrX 31973767 31973788 -145000352 + AT_rich Low_complexity Low_complexity 1 21 0 2194 93 7 10 chrX 31973790 31974081 -145000059 + AluSg SINE Alu 1 290 -20 2081 110 28 0 chrX 31974267 31974549 -144999591 - AluSg SINE Alu -20 290 1 2380 87 0 3 chrX 31974693 31974992 -144999148 - AluSx SINE Alu -14 298 1 1698 149 64 7 chrX 31975139 31975421 -144998719 - AluSx SINE Alu -14 298 1 1021 193 63 42 chrX 31975984 31976224 -144997916 + AluJo SINE Alu 64 307 -5 2263 88 0 3 chrX 31976226 31976522 -144997618 + AluSg1 SINE Alu 1 295 -14 198 0 0 0 chrX 31977215 31977237 -144996903 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 1954 143 4 0 chrX 31977237 31977516 -144996624 - AluSx SINE Alu -32 280 1 24 0 0 0 chrX 31977662 31977686 -144996454 + AT_rich Low_complexity Low_complexity 1 24 0 4176 172 74 19 chrX 31978055 31978844 -144995296 - L1MD1 LINE L1 -12 6624 5745 2253 86 36 0 chrX 31978844 31979145 -144994995 - AluSq SINE Alu -1 312 1 4176 172 74 19 chrX 31979145 31979494 -144994646 - L1MD1 LINE L1 -891 5745 5417 884 249 12 8 chrX 31979503 31979748 -144994392 - L1MD1 LINE L1 -1163 5377 5132 4426 51 7 10 chrX 31979750 31980335 -144993805 - LTR10C LTR ERV1 0 591 9 810 248 113 54 chrX 31980335 31980478 -144993662 - L1MD1 LINE L1 -1406 5134 5001 1894 131 13 29 chrX 31980478 31980608 -144993532 + AluSx SINE Alu 1 132 -180 2362 74 0 13 chrX 31980608 31980920 -144993220 + AluY SINE Alu 1 308 -3 2321 99 3 0 chrX 31980925 31981227 -144992913 + AluSx SINE Alu 3 305 -7 1894 131 13 29 chrX 31981227 31981404 -144992736 + AluSx SINE Alu 136 309 -3 810 248 113 54 chrX 31981404 31981703 -144992437 - L1MD1 LINE L1 -1539 5001 4666 1742 91 0 0 chrX 31981711 31981932 -144992208 - AluY SINE Alu -12 299 79 1437 200 76 125 chrX 31981961 31982802 -144991338 - L1MD1 LINE L1 -2120 4420 3621 198 0 0 0 chrX 31982803 31982825 -144991315 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1136 89 19 0 chrX 31982825 31982982 -144991158 - AluSg/x SINE Alu -18 294 135 2043 92 53 0 chrX 31982983 31983267 -144990873 - AluSq SINE Alu -13 300 2 423 0 0 0 chrX 31983276 31983323 -144990817 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2098 78 0 48 chrX 31983325 31983620 -144990520 - AluY SINE Alu -30 281 1 683 208 84 45 chrX 31983629 31984009 -144990131 - L1MD1 LINE L1 -2931 3609 3215 3615 184 83 70 chrX 31984025 31984277 -144989863 - L1MD1 LINE L1 -4062 2478 2231 2351 66 0 13 chrX 31984277 31984578 -144989562 - AluY SINE Alu -14 297 1 3615 184 83 70 chrX 31984578 31985773 -144988367 - L1MD1 LINE L1 -4309 2231 1013 1423 215 13 30 chrX 31985775 31986073 -144988067 - AluJo SINE Alu -19 293 1 507 303 124 113 chrX 31986531 31987206 -144986934 - L1MD1 LINE L1 -5602 938 393 312 48 0 0 chrX 31987206 31987248 -144986892 + (TG)n Simple_repeat Simple_repeat 2 43 0 507 303 124 113 chrX 31987248 31987328 -144986812 - L1MD1 LINE L1 -6147 393 315 444 37 0 0 chrX 31987412 31987466 -144986674 + (TG)n Simple_repeat Simple_repeat 2 55 0 931 274 15 38 chrX 31987627 31988018 -144986122 - L1MD1 LINE L1 -6142 398 17 1995 104 57 0 chrX 31988818 31989097 -144985043 + AluSg SINE Alu 1 295 -15 1692 188 69 112 chrX 31989144 31989300 -144984840 - L1M4 LINE L1 -3242 3402 3241 1871 98 98 4 chrX 31989300 31989564 -144984576 + AluSx SINE Alu 1 289 -23 1692 188 69 112 chrX 31989564 31990146 -144983994 - L1M4 LINE L1 -3403 3241 2747 2204 108 3 10 chrX 31990146 31990443 -144983697 + AluSx SINE Alu 1 295 -17 1692 188 69 112 chrX 31990443 31990587 -144983553 - L1M4 LINE L1 -3897 2747 2598 2342 86 7 0 chrX 31990598 31990889 -144983251 - AluSx SINE Alu -19 293 1 1471 224 42 20 chrX 31990918 31991275 -144982865 - MLT1A1 LTR MaLR 0 365 1 4310 223 110 49 chrX 31991283 31993218 -144980922 - L1M4 LINE L1 -4571 2075 2 315 321 104 64 chrX 31993239 31993433 -144980707 - L1MC4a LINE L1 -1211 6597 6412 1558 149 133 3 chrX 31993433 31993741 -144980399 + MER7A DNA MER2_type 1 346 0 315 321 104 64 chrX 31993741 31993920 -144980220 - L1MC4a LINE L1 -1396 6412 6209 1663 182 14 10 chrX 31994354 31994651 -144979489 - AluJb SINE Alu -14 298 1 26 74 0 0 chrX 31994766 31994820 -144979320 + AT_rich Low_complexity Low_complexity 1 54 0 198 103 0 0 chrX 31994852 31994881 -144979259 + (TG)n Simple_repeat Simple_repeat 2 30 0 210 37 0 0 chrX 31994885 31994912 -144979228 + (GA)n Simple_repeat Simple_repeat 2 28 0 580 131 50 0 chrX 31994913 31995012 -144979128 - AluSq/x SINE Alu -202 111 8 249 244 204 18 chrX 31995106 31995327 -144978813 - HAL1 LINE L1 -123 2384 2123 240 154 0 0 chrX 31995437 31995476 -144978664 - HAL1 LINE L1 -550 1957 1919 1194 118 0 0 chrX 31995476 31995646 -144978494 - AluSq SINE Alu -11 302 133 216 0 0 0 chrX 31995646 31995670 -144978470 + (TG)n Simple_repeat Simple_repeat 1 24 0 1663 115 130 7 chrX 31995671 31995948 -144978192 - AluSx SINE Alu 0 310 1 237 118 118 0 chrX 31996016 31996067 -144978073 - HAL1 LINE L1 -651 1856 1800 1366 222 187 16 chrX 31996470 31996999 -144977141 - MLT1G LTR MaLR 0 590 13 982 257 41 55 chrX 31997143 31997559 -144976581 - L1ME3A LINE L1 -11 6159 5750 1740 112 4 12 chrX 31998397 31998647 -144975493 - AluSq SINE Alu -23 290 43 10060 45 6 126 chrX 31998704 32000273 -144973867 - SVA Other Other -5 1381 1 2166 111 7 7 chrX 32000282 32000589 -144973551 - AluSp SINE Alu -6 307 1 281 279 15 0 chrX 32001145 32001213 -144972927 + MIR SINE MIR 86 154 -108 1762 137 32 35 chrX 32001213 32001499 -144972641 + Tigger2a DNA MER2_type 1 287 -2421 2306 82 0 16 chrX 32001499 32001803 -144972337 - AluSq SINE Alu -14 299 1 1762 137 32 35 chrX 32001803 32001860 -144972280 + Tigger2a DNA MER2_type 287 343 -91 212 302 0 0 chrX 32001929 32001982 -144972158 + (TA)n Simple_repeat Simple_repeat 1 53 0 1093 246 72 36 chrX 32002002 32002378 -144971762 + LTR10C LTR ERV1 188 590 -43 468 183 0 21 chrX 32002396 32002489 -144971651 + Tigger2a DNA MER2_type 340 430 -4 322 207 92 23 chrX 32002492 32002579 -144971561 + MIR SINE MIR 155 247 -15 217 213 0 43 chrX 32002821 32002868 -144971272 + MIR SINE MIR 58 102 -160 2376 170 64 28 chrX 32003728 32004414 -144969726 + Tigger7 DNA MER2_type 11 2587 0 222 118 0 0 chrX 32004587 32004621 -144969519 + (GGAA)n Simple_repeat Simple_repeat 2 35 0 1883 154 6 28 chrX 32004830 32005149 -144968991 - AluJo SINE Alu 0 312 1 2119 106 7 10 chrX 32005226 32005527 -144968613 - AluSx SINE Alu -12 300 1 412 259 0 69 chrX 32005851 32005982 -144968158 - MIR SINE MIR -94 168 47 26 30 0 0 chrX 32006360 32006393 -144967747 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 32006761 32006784 -144967356 + AT_rich Low_complexity Low_complexity 1 23 0 1956 151 109 2 chrX 32007246 32007678 -144966462 - L1MC3 LINE L1 -1 7784 7307 363 169 45 11 chrX 32007680 32007769 -144966371 - L1MC3 LINE L1 -655 7130 7039 1395 238 193 19 chrX 32007770 32007842 -144966298 - L1MEc LINE L1 -3152 3063 3005 1904 93 116 8 chrX 32007842 32008110 -144966030 - AluSg SINE Alu -13 297 1 1395 238 193 19 chrX 32008110 32008627 -144965513 - L1MEc LINE L1 -3210 3005 2331 2462 71 7 0 chrX 32008627 32008936 -144965204 - AluY SINE Alu 0 311 1 1395 238 193 19 chrX 32008936 32009046 -144965094 - L1MEc LINE L1 -3884 2331 2241 2345 99 3 13 chrX 32009064 32009377 -144964763 - AluSg SINE Alu 0 310 1 2022 208 54 88 chrX 32009387 32010235 -144963905 - L1MD2 LINE L1 0 6242 5367 1835 110 21 45 chrX 32010235 32010525 -144963615 - AluSx SINE Alu 0 312 30 2022 208 54 88 chrX 32010525 32010670 -144963470 - L1MD2 LINE L1 -875 5367 5316 2289 100 0 0 chrX 32010670 32010969 -144963171 - AluSx SINE Alu -13 299 1 2022 208 54 88 chrX 32010969 32011029 -144963111 - L1MD2 LINE L1 -926 5316 5255 833 273 53 47 chrX 32011091 32011735 -144962405 - L1MEc LINE L1 -4663 1733 1086 1232 115 0 0 chrX 32011739 32011904 -144962236 - AluSg/x SINE Alu -6 306 142 189 0 0 0 chrX 32011917 32011938 -144962202 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1966 130 0 7 chrX 32011938 32012223 -144961917 - AluSx SINE Alu -29 283 1 1657 246 108 66 chrX 32012223 32012849 -144961291 - L1MEc LINE L1 -5302 1094 495 378 0 0 0 chrX 32012849 32012891 -144961249 + (TG)n Simple_repeat Simple_repeat 2 43 0 1698 196 17 0 chrX 32012898 32013189 -144960951 - AluJo SINE Alu -16 296 1 1657 246 108 66 chrX 32013189 32013210 -144960930 - L1MEc LINE L1 -5906 490 471 525 138 85 23 chrX 32013210 32013340 -144960800 - L1MA3 LINE L1 0 6305 6168 1657 246 108 66 chrX 32013340 32013697 -144960443 - L1MEc LINE L1 -5925 471 39 204 40 0 0 chrX 32014258 32014283 -144959857 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 1833 154 0 20 chrX 32014285 32014577 -144959563 - AluSx SINE Alu -26 286 1 485 244 64 26 chrX 32015107 32015263 -144958877 + MIR SINE MIR 100 261 -1 247 250 53 13 chrX 32015371 32015447 -144958693 - HAL1 LINE L1 -8 2499 2421 561 147 0 11 chrX 32015449 32015544 -144958596 + MER2 DNA MER2_type 245 338 -7 489 310 84 46 chrX 32015593 32015986 -144958154 + L1M4 LINE L1 484 891 -5651 420 247 132 17 chrX 32016047 32016221 -144957919 + L1M4 LINE L1 899 1092 -5454 565 260 59 12 chrX 32016225 32016479 -144957661 + L1MC4 LINE L1 7584 7849 -193 371 157 98 10 chrX 32016522 32016624 -144957516 + L1MC4 LINE L1 7932 8042 0 2047 88 0 4 chrX 32017143 32017403 -144956737 - AluSc SINE Alu -23 286 28 2691 178 65 43 chrX 32017531 32018032 -144956108 - L1ME1 LINE L1 -181 5985 5447 964 110 39 0 chrX 32018032 32018186 -144955954 - L1PA12 LINE L1 0 6168 6009 2691 178 65 43 chrX 32018186 32018541 -144955599 - L1ME1 LINE L1 -719 5447 5101 2512 166 21 56 chrX 32019211 32019273 -144954867 + L1MB2 LINE L1 5621 5684 -487 1936 86 43 47 chrX 32019273 32019574 -144954566 - AluSx SINE Alu -12 300 1 2512 166 21 56 chrX 32019574 32020078 -144954062 + L1MB2 LINE L1 5684 6167 -4 2148 117 0 49 chrX 32020285 32020611 -144953529 - AluSx SINE Alu -2 310 1 180 299 42 69 chrX 32020690 32020834 -144953306 + L2 LINE L2 1944 2083 -1231 264 155 41 124 chrX 32021024 32021077 -144953063 - HAL1 LINE L1 -112 2395 2352 2391 87 7 0 chrX 32021077 32021386 -144952754 - AluSq SINE Alu -2 311 1 264 155 41 124 chrX 32021386 32021429 -144952711 - HAL1 LINE L1 -155 2352 2307 2294 87 0 22 chrX 32021461 32021773 -144952367 - AluSg SINE Alu -5 305 1 2090 139 0 0 chrX 32021777 32022078 -144952062 - AluSx SINE Alu -11 301 1 352 217 179 9 chrX 32022509 32022721 -144951419 - HAL1 LINE L1 -876 1631 1384 313 156 0 47 chrX 32023653 32023717 -144950423 - Charlie1 DNA MER1_type -774 1987 1927 513 273 143 13 chrX 32023720 32023874 -144950266 - MIR SINE MIR -63 199 26 657 203 107 38 chrX 32024181 32024525 -144949615 - MLT1D LTR MaLR 0 505 64 1766 125 131 3 chrX 32024790 32025110 -144949030 - MER46B DNA MER2_type 0 236 1 12947 124 34 54 chrX 32025510 32026066 -144948074 + Tigger1 DNA MER2_type 22 588 -1830 338 165 76 38 chrX 32026066 32026145 -144947995 - AluY SINE Alu -11 290 209 12947 124 34 54 chrX 32026145 32026182 -144947958 + Tigger1 DNA MER2_type 588 624 -1794 1607 162 58 11 chrX 32026182 32026460 -144947680 - AluJo SINE Alu -21 291 1 12947 124 34 54 chrX 32026460 32028233 -144945907 + Tigger1 DNA MER2_type 624 2418 0 2110 127 0 3 chrX 32028263 32028554 -144945586 - AluSx SINE Alu -22 290 1 1926 198 135 34 chrX 32028555 32028954 -144945186 - Charlie1 DNA MER1_type -678 2083 1726 2322 93 3 0 chrX 32028954 32029255 -144944885 + AluSp SINE Alu 1 302 -11 1926 198 135 34 chrX 32029255 32029546 -144944594 - Charlie1 DNA MER1_type -1035 1726 1 2335 74 10 7 chrX 32029682 32029978 -144944162 - AluY SINE Alu -13 298 2 927 223 155 76 chrX 32030199 32030239 -144943901 - L1M4 LINE L1 -1205 4941 4906 2330 78 0 7 chrX 32030239 32030533 -144943607 - AluSc SINE Alu -17 292 1 927 223 155 76 chrX 32030533 32031085 -144943055 - L1M4 LINE L1 -1240 4906 4302 616 210 65 28 chrX 32031101 32031315 -144942825 - L1MEc LINE L1 -4331 2065 1844 1094 136 14 38 chrX 32031348 32031561 -144942579 - Tigger1 DNA MER2_type -2 2416 2209 505 107 291 0 chrX 32031593 32031696 -144942444 - Tigger1 DNA MER2_type -2285 133 1 2253 192 21 10 chrX 32031742 32032227 -144941913 - L1ME1 LINE L1 -256 5910 5421 1150 209 66 68 chrX 32032225 32032270 -144941870 - L1ME1 LINE L1 -1383 4763 4719 * 2035 118 4 0 chrX 32032270 32032549 -144941591 + AluSq SINE Alu 1 280 -33 1150 209 66 68 chrX 32032549 32033020 -144941120 - L1ME1 LINE L1 -1427 4719 4248 960 230 30 8 chrX 32033031 32033296 -144940844 - L1MEc LINE L1 -4533 1863 1593 526 231 96 5 chrX 32033441 32033640 -144940500 - L1MEc LINE L1 -6144 252 36 2109 128 21 0 chrX 32034301 32034591 -144939549 - AluSx SINE Alu -16 296 1 464 270 99 12 chrX 32034625 32034947 -144939193 - L1M4 LINE L1 -855 5291 4942 321 252 195 0 chrX 32035137 32035296 -144938844 - L1M4 LINE L1 -3819 2327 2138 2280 60 49 3 chrX 32035593 32035877 -144938263 - AluY SINE Alu -14 297 1 29 28 0 0 chrX 32037254 32037290 -144936850 + AT_rich Low_complexity Low_complexity 1 36 0 1776 143 17 20 chrX 32037310 32037611 -144936529 + AluJb SINE Alu 1 300 -12 2263 74 3 17 chrX 32038222 32038520 -144935620 - AluSg SINE Alu -16 294 1 267 54 0 0 chrX 32038779 32038816 -144935324 + (TG)n Simple_repeat Simple_repeat 1 37 0 3990 54 6 12 chrX 32038954 32039470 -144934670 + LTR10D LTR ERV1 1 513 0 655 227 118 45 chrX 32040003 32040223 -144933917 + MIR SINE MIR 25 260 -2 2203 110 0 3 chrX 32040473 32040774 -144933366 - AluSq SINE Alu -13 300 1 1373 151 83 30 chrX 32040967 32041264 -144932876 - AluJo SINE Alu 0 316 6 189 74 0 0 chrX 32041268 32041295 -144932845 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 427 263 79 0 chrX 32041509 32041676 -144932464 - MLT1J LTR MaLR -290 173 15 1789 132 53 4 chrX 32042006 32042272 -144931868 + AluJb SINE Alu 17 295 -17 550 117 225 8 chrX 32043712 32043832 -144930308 - L1MB2 LINE L1 -14 6157 6012 32 43 0 0 chrX 32043994 32044040 -144930100 + AT_rich Low_complexity Low_complexity 1 46 0 379 326 169 4 chrX 32044265 32044538 -144929602 - L3 LINE CR1 -267 1310 993 229 280 0 0 chrX 32044561 32044611 -144929529 + polypyrimidine Low_complexity Low_complexity 1 50 0 1548 174 7 33 chrX 32044612 32044911 -144929229 - AluJo SINE Alu -21 291 1 228 347 33 8 chrX 32044915 32045036 -144929104 - L3 LINE CR1 -615 962 839 2284 106 0 0 chrX 32045059 32045361 -144928779 + AluSq SINE Alu 11 312 -1 862 166 57 26 chrX 32046085 32046278 -144927862 - MER3 DNA MER1_type 0 209 11 2265 93 0 3 chrX 32046383 32046683 -144927457 - AluY SINE Alu -12 299 1 225 0 0 0 chrX 32046806 32046831 -144927309 + (T)n Simple_repeat Simple_repeat 1 25 0 318 50 0 0 chrX 32046832 32046872 -144927268 - MER4E LTR ERV1 -74 692 653 231 307 23 34 chrX 32050529 32050617 -144923523 + MIR SINE MIR 60 146 -116 21 0 0 0 chrX 32050735 32050756 -144923384 + AT_rich Low_complexity Low_complexity 1 21 0 3319 136 29 7 chrX 32050801 32051381 -144922759 - Tigger1 DNA MER2_type -1 2417 1825 1658 162 51 30 chrX 32051382 32051678 -144922462 + AluJo SINE Alu 1 302 -10 8909 126 14 7 chrX 32051678 32053123 -144921017 - Tigger1 DNA MER2_type -963 1455 1 2100 131 0 10 chrX 32053346 32053652 -144920488 - AluJo SINE Alu -9 303 1 2599 43 0 3 chrX 32054079 32054379 -144919761 - AluY SINE Alu -12 299 1 883 277 106 6 chrX 32055234 32055563 -144918577 - LTR16A LTR ERVL -64 386 25 2325 100 3 0 chrX 32055898 32056199 -144917941 + AluSp SINE Alu 1 302 -11 2605 48 3 0 chrX 32056615 32056925 -144917215 - AluY SINE Alu 0 311 1 27 49 0 0 chrX 32057588 32057629 -144916511 + AT_rich Low_complexity Low_complexity 1 41 0 249 240 0 0 chrX 32057843 32057893 -144916247 - MLT1J LTR MaLR -112 399 350 306 265 130 19 chrX 32057897 32058096 -144916044 - MLT1L LTR MaLR -8 605 352 1862 103 95 129 chrX 32058772 32059275 -144914865 - LTR21A LTR ERV1 -19 486 1 2309 92 3 0 chrX 32059963 32060256 -144913884 + AluSx SINE Alu 1 294 -18 997 246 264 38 chrX 32060470 32061347 -144912793 - HAL1 LINE L1 -657 1850 775 474 125 4 63 chrX 32062581 32062679 -144911461 - L1M3c LINE L1 -5109 1032 933 375 204 0 31 chrX 32062825 32062923 -144911217 - L1MB8 LINE L1 -7 6171 6077 280 175 0 0 chrX 32062923 32062980 -144911160 + LTR28 LTR ERV1 1 57 -963 * 1531 162 65 58 chrX 32062952 32063365 -144910775 + MER61C LTR ERV1 14 429 -5 2199 162 23 36 chrX 32063435 32063634 -144910506 - L1MB8 LINE L1 -190 5994 5794 1370 167 160 17 chrX 32063634 32063934 -144910206 + MER2 DNA MER2_type 2 344 0 2199 162 23 36 chrX 32063934 32064259 -144909881 - L1MB8 LINE L1 -390 5794 5477 548 165 0 66 chrX 32064301 32064422 -144909718 - L1MB8 LINE L1 -981 5165 5053 587 236 120 82 chrX 32064443 32064515 -144909625 - L1MC/D LINE L1 -2076 5732 5664 1887 147 0 33 chrX 32064515 32064814 -144909326 - AluJo SINE Alu -23 289 1 587 236 120 82 chrX 32064814 32065165 -144908975 - L1MC/D LINE L1 -2144 5664 5293 709 344 61 33 chrX 32065185 32065828 -144908312 - L1MC/D LINE L1 -875 5271 4611 2092 209 91 12 chrX 32065908 32066502 -144907638 - L1ME1 LINE L1 -63 6103 5463 227 253 0 45 chrX 32066512 32066666 -144907474 + CT-rich Low_complexity Low_complexity 1 147 0 2054 241 134 44 chrX 32066690 32067236 -144906904 - L1ME1 LINE L1 -845 5301 4806 2287 73 7 7 chrX 32067236 32067536 -144906604 - AluSc SINE Alu -1 308 9 2054 241 134 44 chrX 32067536 32068228 -144905912 - L1ME1 LINE L1 -1340 4806 3951 3332 166 87 10 chrX 32068289 32068977 -144905163 - MER21B LTR ERV1 -20 843 103 310 183 0 28 chrX 32068977 32069048 -144905092 - MER21B LTR ERV1 -708 155 87 1978 93 7 11 chrX 32069050 32069319 -144904821 + AluSx SINE Alu 1 268 -44 307 88 281 0 chrX 32069744 32069801 -144904339 + MADE1 DNA Mariner 1 73 -7 209 372 61 39 chrX 32070390 32070570 -144903570 - MIR3 SINE MIR -9 199 16 189 0 0 0 chrX 32070658 32070679 -144903461 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 41343 42 4 1 chrX 32070679 32076797 -144897343 - L1PA4 LINE L1 -16 6139 3 480 162 30 0 chrX 32077096 32077195 -144896945 - MER58 DNA MER1_type 0 2420 2319 240 200 243 0 chrX 32077201 32077271 -144896869 - MER58 DNA MER1_type -2333 87 1 1984 112 3 37 chrX 32077506 32077839 -144896301 + AluSx SINE Alu 2 324 0 465 325 86 23 chrX 32077847 32078149 -144895991 - L1MC/D LINE L1 -1665 4481 4161 353 149 15 0 chrX 32078549 32078616 -144895524 + CT-rich Low_complexity Low_complexity 1 68 0 335 298 44 85 chrX 32078650 32078898 -144895242 - L1MC5 LINE L1 -385 7576 7339 2161 98 11 17 chrX 32078922 32079237 -144894903 - AluSq SINE Alu 0 313 1 2471 77 6 0 chrX 32079460 32079771 -144894369 - AluSp SINE Alu 0 313 1 2113 114 10 3 chrX 32079805 32080094 -144894046 - AluSc SINE Alu -18 291 1 1141 251 111 23 chrX 32080153 32080596 -144893544 + HsTC2a DNA Tc2 100 581 -163 846 156 0 0 chrX 32080629 32080757 -144893383 - FLAM_C SINE Alu -4 129 2 1917 81 0 0 chrX 32080889 32081124 -144893016 + AluSc SINE Alu 56 290 -19 268 250 73 10 chrX 32081179 32081275 -144892865 - L1MEd LINE L1 -4875 1244 1143 2484 127 37 47 chrX 32081318 32081830 -144892310 - L1MA7 LINE L1 -102 6189 5683 1590 140 71 37 chrX 32081842 32082164 -144891976 - LTR10A LTR ERV1 -61 548 216 503 171 9 0 chrX 32082268 32082373 -144891767 - L1MA7 LINE L1 -605 5686 5581 321 244 140 55 chrX 32082464 32082628 -144891512 - L1MEd LINE L1 -5903 216 39 1744 111 32 25 chrX 32082709 32083016 -144891124 - AluSx SINE Alu 0 309 1 539 226 22 115 chrX 32083151 32083299 -144890841 - MIR SINE MIR -29 233 109 1649 185 13 20 chrX 32083299 32083623 -144890517 - AluJo SINE Alu 0 322 1 539 226 22 115 chrX 32083623 32083698 -144890442 - MIR SINE MIR -153 109 29 216 262 0 0 chrX 32083684 32083726 -144890414 + MIR SINE MIR 47 88 -174 * 182 281 18 18 chrX 32084085 32084142 -144889998 - L2 LINE L2 -94 3219 3163 3385 134 89 48 chrX 32084165 32084919 -144889221 - LTR1 LTR ERV1 0 785 1 244 279 73 110 chrX 32085293 32085648 -144888492 - L2 LINE L2 -570 2744 2403 201 154 0 0 chrX 32085816 32085855 -144888285 + T-rich Low_complexity Low_complexity 2 40 0 477 151 35 12 chrX 32086163 32086248 -144887892 - Tigger7 DNA MER2_type -9 2478 2392 225 114 0 0 chrX 32086248 32086283 -144887857 - MER4E LTR ERV1 0 766 732 893 102 110 0 chrX 32086284 32086411 -144887729 + AluSq/x SINE Alu 1 141 -172 1615 166 195 46 chrX 32086428 32086905 -144887235 - LTR10A LTR ERV1 -61 548 1 11344 113 48 47 chrX 32086932 32091113 -144883027 - Harlequin LTR ERV1 -26 7759 704 8550 202 23 13 chrX 32091247 32093053 -144881087 + HERVI LTR ERV1 606 2429 -5356 219 236 55 0 chrX 32093129 32093184 -144880956 + GA-rich Low_complexity Low_complexity 6 63 0 494 234 68 85 chrX 32093320 32093615 -144880525 - LTR10A-int LTR ERV1 -6359 290 1 1649 141 89 35 chrX 32093624 32093971 -144880169 - LTR10A LTR ERV1 -61 548 183 269 182 55 0 chrX 32094018 32094073 -144880067 - LTR10A LTR ERV1 -551 58 1 1125 126 0 0 chrX 32094073 32094224 -144879916 + AluSc SINE Alu 140 290 -19 3755 99 67 35 chrX 32094224 32094882 -144879258 + HSMAR2 DNA Mariner 624 1302 0 257 258 117 80 chrX 32094908 32095071 -144879069 - L2 LINE L2 -24 3289 3121 * 373 232 104 24 chrX 32095038 32095163 -144878977 + MIR SINE MIR 5 139 -123 1715 58 0 0 chrX 32095482 32095687 -144878453 + AluY SINE Alu 107 311 0 235 291 36 64 chrX 32095893 32096003 -144878137 + L2 LINE L2 3182 3288 -25 27 0 0 0 chrX 32096060 32096087 -144878053 + AT_rich Low_complexity Low_complexity 1 27 0 3408 106 129 3 chrX 32096346 32096910 -144877230 - MER41B LTR ERV1 0 635 1 1104 269 18 0 chrX 32096952 32097235 -144876905 + LTR16C LTR ERVL 195 482 -9 952 118 92 20 chrX 32097473 32097626 -144876514 + FRAM SINE Alu 2 165 -11 26 0 0 0 chrX 32097634 32097660 -144876480 + AT_rich Low_complexity Low_complexity 1 26 0 192 305 146 0 chrX 32098953 32099035 -144875105 + MIR SINE MIR 38 131 -77 1585 167 7 14 chrX 32099040 32099365 -144874775 - AluJo SINE Alu 0 329 7 2433 73 3 7 chrX 32099481 32099784 -144874356 - AluSx SINE Alu -8 304 3 261 354 39 15 chrX 32100336 32100466 -144873674 - MIR3 SINE MIR -9 199 67 1913 143 0 40 chrX 32102374 32102696 -144871444 - AluJb SINE Alu -1 311 3 423 0 0 0 chrX 32103737 32103784 -144870356 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2256 114 0 3 chrX 32103784 32104082 -144870058 - AluSc SINE Alu -10 299 1 408 253 6 56 chrX 32106168 32106330 -144867810 - L1ME3 LINE L1 -9 6153 6000 21 0 0 0 chrX 32107064 32107085 -144867055 + AT_rich Low_complexity Low_complexity 1 21 0 387 287 32 21 chrX 32107205 32107487 -144866653 + L1M4 LINE L1 4765 5049 -1097 328 336 36 15 chrX 32109660 32109797 -144864343 - MIR3 SINE MIR -9 199 60 377 240 0 0 chrX 32109797 32109895 -144864245 - L1ME2 LINE L1 -6 6160 6060 268 292 130 13 chrX 32112695 32112849 -144861291 - MLT1L LTR MaLR 0 615 444 263 305 84 0 chrX 32112981 32113076 -144861064 - MLT1L LTR MaLR -371 244 142 224 340 109 41 chrX 32113418 32113565 -144860575 + MIR SINE MIR 31 187 -75 6462 73 14 8 chrX 32113598 32114709 -144859431 - L1PB1 LINE L1 -3 6148 5029 2263 115 0 0 chrX 32115115 32115410 -144858730 - AluSx SINE Alu -17 295 1 2192 89 10 20 chrX 32116493 32116797 -144857343 + AluSq SINE Alu 1 301 -12 601 143 0 62 chrX 32116967 32117079 -144857061 + AluSq/x SINE Alu 1 105 -208 693 176 0 0 chrX 32117141 32117249 -144856891 + AluSq/x SINE Alu 1 108 -204 313 75 15 60 chrX 32117249 32117316 -144856824 + (CA)n Simple_repeat Simple_repeat 2 65 0 2220 79 3 63 chrX 32117744 32118060 -144856080 - AluSq SINE Alu -16 297 1 2008 124 7 0 chrX 32119100 32119390 -144854750 + AluSq SINE Alu 1 292 -21 1138 134 12 0 chrX 32119401 32119572 -144854568 + AluSg/x SINE Alu 125 297 -15 238 221 103 0 chrX 32119772 32119840 -144854300 - MER5C DNA MER1_type -27 297 223 1790 145 50 20 chrX 32120639 32120942 -144853198 - AluSx SINE Alu 0 312 1 202 143 24 0 chrX 32122470 32122512 -144851628 + T-rich Low_complexity Low_complexity 2 44 0 1266 100 6 0 chrX 32122538 32122698 -144851442 - AluSq SINE Alu -152 161 1 1952 147 17 0 chrX 32123500 32123800 -144850340 - AluSx SINE Alu -7 305 1 2368 72 0 0 chrX 32125633 32125946 -144848194 - AluY SINE Alu 0 313 1 698 188 0 7 chrX 32126054 32126192 -144847948 - FRAM SINE Alu -1 175 39 25 0 0 0 chrX 32127170 32127195 -144846945 + AT_rich Low_complexity Low_complexity 1 25 0 2185 118 0 3 chrX 32127887 32128184 -144845956 + AluSx SINE Alu 1 296 -16 1415 39 0 22 chrX 32128544 32128726 -144845414 + L1PA8 LINE L1 5991 6168 -4 201 333 0 0 chrX 32129027 32129078 -144845062 - MER5B DNA MER1_type -2 176 126 328 298 112 12 chrX 32129257 32129418 -144844722 - L1ME LINE L1 -4751 1675 1499 6217 53 13 29 chrX 32129459 32130284 -144843856 - SVA Other Other 0 1386 575 1886 128 10 14 chrX 32130423 32130712 -144843428 - AluSx SINE Alu -24 288 1 1121 150 12 0 chrX 32130741 32130914 -144843226 + AluSg/x SINE Alu 137 311 -1 662 238 45 85 chrX 32130952 32131528 -144842612 + L1MEc LINE L1 969 1521 -4875 333 190 40 34 chrX 32131528 32131579 -144842561 + L1MEc LINE L1 2192 2241 -3991 318 50 0 0 chrX 32131579 32131619 -144842521 + (CCA)n Simple_repeat Simple_repeat 1 40 0 333 190 40 34 chrX 32131619 32131687 -144842453 + L1MEc LINE L1 2241 2327 -3905 256 250 71 24 chrX 32131738 32131822 -144842318 - L1M4 LINE L1 -1302 4844 4757 896 318 45 14 chrX 32132121 32132628 -144841512 - L1M4 LINE L1 -1985 4161 3639 3069 154 47 21 chrX 32132638 32132979 -144841161 + L1MB3 LINE L1 5570 5934 -249 2297 109 7 0 chrX 32132979 32133282 -144840858 - AluSx SINE Alu -6 306 2 3069 154 47 21 chrX 32133282 32133518 -144840622 + L1MB3 LINE L1 5934 6162 -21 333 264 101 66 chrX 32133785 32134012 -144840128 + L1MC4a LINE L1 5740 5974 -1834 1546 154 32 58 chrX 32134420 32134732 -144839408 - MER7A DNA MER2_type -40 306 5 2014 133 7 3 chrX 32134800 32135094 -144839046 - AluSx SINE Alu -17 295 1 2081 141 0 0 chrX 32135275 32135581 -144838559 - AluJb SINE Alu -6 306 1 414 38 23 114 chrX 32136277 32136408 -144837732 + SVA Other Other 1 119 -1267 328 94 0 0 chrX 32136519 32136572 -144837568 + Alu SINE Alu 249 301 0 1722 259 84 25 chrX 32136578 32137208 -144836932 - L1ME LINE L1 -5342 1074 408 281 309 71 21 chrX 32137305 32137514 -144836626 - L1M3 LINE L1 -361 5810 5582 453 267 59 12 chrX 32137745 32137951 -144836189 - L1M3 LINE L1 -1018 5128 4915 217 309 83 0 chrX 32138247 32138331 -144835809 + L2 LINE L2 3182 3272 0 2375 85 3 3 chrX 32138450 32138755 -144835385 + AluSp SINE Alu 2 306 -7 28 29 0 0 chrX 32139285 32139320 -144834820 + AT_rich Low_complexity Low_complexity 1 35 0 2243 101 0 0 chrX 32139403 32139699 -144834441 - AluSg SINE Alu -14 296 1 1567 153 35 28 chrX 32141099 32141386 -144832754 - AluJo SINE Alu -23 289 1 2241 119 0 0 chrX 32141543 32141845 -144832295 + AluSc SINE Alu 1 302 -7 284 333 36 62 chrX 32143081 32143218 -144830922 + MIR3 SINE MIR 21 153 -55 939 197 18 57 chrX 32143218 32143446 -144830694 + MER20 DNA MER1_type 1 219 0 284 333 36 62 chrX 32143446 32143500 -144830640 + MIR3 SINE MIR 153 207 -1 206 160 0 20 chrX 32143652 32143702 -144830438 + (TTTAA)n Simple_repeat Simple_repeat 1 49 0 324 259 175 56 chrX 32144906 32145049 -144829091 - MIR3 SINE MIR -2 206 47 258 370 29 17 chrX 32145528 32145701 -144828439 + L2 LINE L2 2216 2390 -924 239 266 51 38 chrX 32146606 32146685 -144827455 + L2 LINE L2 3184 3263 -50 23 78 0 0 chrX 32146812 32146863 -144827277 + AT_rich Low_complexity Low_complexity 1 51 0 2201 130 0 0 chrX 32149875 32150183 -144823957 - AluSx SINE Alu -4 308 1 518 277 113 4 chrX 32150485 32150793 -144823347 - L1MC4a LINE L1 -338 5817 5616 236 288 53 53 chrX 32152946 32153078 -144821062 - L1ME LINE L1 -420 5701 5570 1495 250 244 69 chrX 32153255 32154367 -144819773 - L2 LINE L2 0 3313 1869 793 204 129 5 chrX 32154367 32154553 -144819587 + MER58C DNA MER1_type 3 211 -4 1495 250 244 69 chrX 32154553 32154926 -144819214 - L2 LINE L2 -1444 1869 1562 2311 98 3 0 chrX 32156037 32156344 -144817796 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 32156945 32156972 -144817168 + AT_rich Low_complexity Low_complexity 1 27 0 786 182 7 14 chrX 32156976 32157124 -144817016 - AluJo SINE Alu -30 282 136 482 169 34 0 chrX 32157141 32157259 -144816881 + CT-rich Low_complexity Low_complexity 1 122 0 835 155 0 0 chrX 32157259 32157388 -144816752 - AluJo SINE Alu -173 129 1 24 0 0 0 chrX 32159932 32159956 -144814184 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 32160124 32160151 -144813989 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2127 102 10 19 chrX 32160154 32160467 -144813673 - AluSp SINE Alu -3 310 1 21 0 0 0 chrX 32160585 32160606 -144813534 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chrX 32161222 32161259 -144812881 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chrX 32161259 32161284 -144812856 + (TA)n Simple_repeat Simple_repeat 1 25 0 6861 54 2 2 chrX 32161284 32162662 -144811478 - L1PA6 LINE L1 -19 6135 4759 21 82 0 0 chrX 32163864 32163913 -144810227 + AT_rich Low_complexity Low_complexity 1 49 0 2321 108 20 3 chrX 32166172 32166523 -144807617 - L1MB2 LINE L1 -17 6154 5798 279 164 0 0 chrX 32166975 32167036 -144807104 + T-rich Low_complexity Low_complexity 1 61 0 495 48 0 0 chrX 32167884 32167946 -144806194 + (TATG)n Simple_repeat Simple_repeat 4 65 0 2223 88 0 7 chrX 32167949 32168233 -144805907 - AluSx SINE Alu -26 286 5 671 167 6 8 chrX 32168355 32168529 -144805611 - MER20 DNA MER1_type 0 219 1 2295 97 3 0 chrX 32169323 32169623 -144804517 - AluSp SINE Alu -12 301 1 2296 90 3 3 chrX 32170160 32170470 -144803670 - AluY SINE Alu -1 310 1 1782 144 21 7 chrX 32170548 32170832 -144803308 + AluJb SINE Alu 1 288 -24 21 0 0 31 chrX 32171334 32171350 -144802790 + AT_rich Low_complexity Low_complexity 1 16 -15 791 129 0 38 chrX 32171350 32171482 -144802658 - FLAM_C SINE Alu -6 127 1 21 0 0 31 chrX 32171482 32171497 -144802643 + AT_rich Low_complexity Low_complexity 16 31 0 21 0 0 0 chrX 32171557 32171578 -144802562 + AT_rich Low_complexity Low_complexity 1 21 0 332 299 23 0 chrX 32172543 32172630 -144801510 + MIR SINE MIR 56 144 -64 320 267 62 51 chrX 32172968 32173010 -144801130 - MER5B DNA MER1_type 0 178 138 1289 162 151 19 chrX 32173010 32173275 -144800865 - AluJo SINE Alu 0 302 3 320 267 62 51 chrX 32173275 32173408 -144800732 - MER5B DNA MER1_type -40 138 1 286 218 0 0 chrX 32173675 32173730 -144800410 + Tigger5 DNA MER2_type 1 55 -2268 566 112 0 22 chrX 32173740 32173829 -144800311 + Tigger5 DNA MER2_type 2237 2323 0 534 240 135 31 chrX 32173832 32174024 -144800116 - MIR SINE MIR -49 213 2 217 180 40 0 chrX 32175032 32175082 -144799058 + GA-rich Low_complexity Low_complexity 4 55 0 266 307 124 22 chrX 32175441 32175666 -144798474 + MARNA DNA Mariner 173 420 -166 214 305 0 0 chrX 32175789 32175848 -144798292 - MIR SINE MIR -62 146 88 43 20 0 0 chrX 32176689 32176739 -144797401 + AT_rich Low_complexity Low_complexity 1 50 0 1413 195 125 7 chrX 32377261 32377711 -144596429 + MLT1E LTR MaLR 4 593 0 21 0 0 0 chrX 32377846 32377867 -144596273 + AT_rich Low_complexity Low_complexity 1 21 0 2274 41 0 22 chrX 32378923 32379193 -144594947 + L1PA8 LINE L1 5909 6172 0 2228 114 0 3 chrX 32379386 32379684 -144594456 + AluSg SINE Alu 1 297 -13 1287 306 47 44 chrX 32379817 32380367 -144593773 + LTR67 LTR ERVL 3 554 -3 324 277 50 20 chrX 32381010 32381111 -144593029 - L2 LINE L2 0 3313 3210 203 281 16 0 chrX 32381231 32381295 -144592845 - MIR3 SINE MIR -6 202 138 236 297 16 0 chrX 32381357 32381421 -144592719 - MIR SINE MIR -85 123 59 186 71 0 0 chrX 32382103 32382131 -144592009 + (TC)n Simple_repeat Simple_repeat 1 28 0 324 0 0 0 chrX 32382131 32382167 -144591973 + (TG)n Simple_repeat Simple_repeat 2 37 0 420 161 0 0 chrX 32382401 32382463 -144591677 - Tigger5 DNA MER2_type 0 2323 2262 413 228 0 0 chrX 32382457 32382536 -144591604 + Tigger5 DNA MER2_type 2242 2320 -3 * 437 192 13 0 chrX 32382536 32382613 -144591527 - Tigger5 DNA MER2_type -2245 78 1 574 224 116 110 chrX 32382615 32382950 -144591190 - MLT1H1 LTR MaLR -67 488 152 923 288 52 29 chrX 32384789 32385197 -144588943 + MER90 LTR ERV1 138 596 -18 658 256 154 8 chrX 32385546 32385780 -144588360 + LTR16A1 LTR ERVL 188 455 -2 387 310 31 31 chrX 32385782 32385950 -144588190 - MIR SINE MIR -66 142 16 320 251 113 19 chrX 32387810 32387983 -144586157 + MIR SINE MIR 42 228 -34 1027 247 71 0 chrX 32388105 32388344 -144585796 - MIR SINE MIR -6 256 1 422 250 52 0 chrX 32388532 32388648 -144585492 + MIR SINE MIR 113 234 -28 290 341 119 28 chrX 32390515 32390691 -144583449 + MIR SINE MIR 54 245 -17 2640 38 0 29 chrX 32390850 32391165 -144582975 + AluY SINE Alu 1 306 -5 216 257 169 59 chrX 32392123 32392259 -144581881 + MIR SINE MIR 46 196 -66 296 344 16 39 chrX 32392392 32392520 -144581620 + L2 LINE L2 3148 3272 0 216 0 0 0 chrX 32393760 32393784 -144580356 + (TCTCCC)n Simple_repeat Simple_repeat 6 29 0 8495 63 8 178 chrX 32393786 32395456 -144578684 + SVA Other Other 2 1386 0 549 314 51 0 chrX 32395630 32395805 -144578335 - LTR33 LTR ERVL -304 217 34 421 196 188 18 chrX 32397086 32397198 -144576942 + L2 LINE L2 3141 3271 -1 390 269 39 10 chrX 32397362 32397466 -144576674 - L2 LINE L2 -4 3309 3203 1368 82 6 11 chrX 32397591 32397774 -144576366 - THE1A LTR MaLR -173 182 1 689 128 0 0 chrX 32397774 32397876 -144576264 + L1MD3 LINE L1 7884 7985 -10 275 291 206 11 chrX 32397943 32398119 -144576021 + L1M4 LINE L1 4413 4553 -1593 387 0 0 0 chrX 32398119 32398162 -144575978 + (TG)n Simple_repeat Simple_repeat 2 44 0 275 291 206 11 chrX 32398162 32398339 -144575801 + L1M4 LINE L1 4553 4835 -1311 * 422 254 181 18 chrX 32398329 32398672 -144575468 + L1M4 LINE L1 2202 2600 -3546 2352 263 84 10 chrX 32400434 32401406 -144572734 + L1M4 LINE L1 2596 3639 -2507 895 228 101 25 chrX 32401405 32401642 -144572498 - L1MCc LINE L1 -5099 1323 1069 * 512 301 6 6 chrX 32401644 32401810 -144572330 - L1ME1 LINE L1 -2 6164 5999 * 2317 220 79 51 chrX 32401804 32402538 -144571602 - L1MCc LINE L1 -5321 1101 2 862 215 47 19 chrX 32402534 32402790 -144571350 + L1M4 LINE L1 3623 3885 -2261 * 180 0 0 0 chrX 32403619 32403639 -144570501 + (A)n Simple_repeat Simple_repeat 1 20 0 5402 113 12 46 chrX 32403838 32404644 -144569496 + LTR39 LTR ERV1 1 779 -4 787 333 107 24 chrX 32404908 32405377 -144568763 + L2 LINE L2 2120 2627 -687 4954 150 19 18 chrX 32405378 32406259 -144567881 + L1P LINE L1 4439 5320 -826 23 33 0 0 chrX 32406408 32406438 -144567702 + AT_rich Low_complexity Low_complexity 1 30 0 1119 217 237 84 chrX 32406606 32407011 -144567129 - MLT1D LTR MaLR 0 467 1 2239 94 37 0 chrX 32407825 32408124 -144566016 - AluSg SINE Alu 0 310 1 380 277 0 0 chrX 32408189 32408272 -144565868 + LTR16C LTR ERVL 409 491 0 1811 194 27 43 chrX 32408558 32408929 -144565211 - MLT1A1 LTR MaLR 0 365 1 922 231 61 78 chrX 32409308 32409668 -144564472 + MLT1J LTR MaLR 158 511 0 2035 186 16 32 chrX 32409886 32410262 -144563878 + MLT1A2 LTR MaLR 5 374 0 221 309 0 12 chrX 32410301 32410385 -144563755 - MIR3 SINE MIR -2 206 124 246 105 0 0 chrX 32410437 32410475 -144563665 + (TCCCC)n Simple_repeat Simple_repeat 1 38 0 2225 129 0 0 chrX 32410475 32410778 -144563362 - AluSx SINE Alu -9 303 1 24 67 0 0 chrX 32411929 32411974 -144562166 + AT_rich Low_complexity Low_complexity 1 45 0 266 237 0 0 chrX 32412363 32412422 -144561718 + MER103 DNA DNA 69 127 -39 259 264 83 74 chrX 32412453 32412574 -144561566 + MLT1G LTR MaLR 255 376 -214 313 259 185 29 chrX 32413027 32413194 -144560946 + L1M4 LINE L1 3214 3420 -2726 1878 169 127 8 chrX 32413194 32413548 -144560592 - MSTD LTR MaLR 0 396 1 313 259 185 29 chrX 32413548 32413585 -144560555 + L1M4 LINE L1 3420 3450 -2696 942 289 113 23 chrX 32413589 32414364 -144559776 + L1M4 LINE L1 3483 4327 -1819 1356 230 8 38 chrX 32414368 32414727 -144559413 + L1M4 LINE L1 4975 5322 -824 2149 115 3 0 chrX 32414727 32415023 -144559117 + AluSx SINE Alu 1 297 -15 1356 230 8 38 chrX 32415023 32415059 -144559081 + L1M4 LINE L1 5322 5358 -788 3425 179 0 5 chrX 32415161 32415775 -144558365 - L1P LINE L1 -1137 5009 4399 2054 177 75 10 chrX 32415981 32416383 -144557757 + MSTA LTR MaLR 1 428 0 5141 176 20 7 chrX 32416383 32417285 -144556855 + MSTA-int LTR MaLR 1 914 -737 311 154 0 31 chrX 32417275 32417340 -144556800 + L1PA13 LINE L1 3372 3434 -2712 * 8188 168 12 0 chrX 32417345 32419503 -144554637 + L1PA13 LINE L1 3988 6159 -4 2244 97 0 0 chrX 32419515 32419814 -144554326 + AluSg1 SINE Alu 1 299 -10 296 197 0 16 chrX 32419829 32419890 -144554250 + L1ME3A LINE L1 6015 6074 -96 27 0 0 0 chrX 32420057 32420084 -144554056 + AT_rich Low_complexity Low_complexity 1 27 0 581 287 17 11 chrX 32421093 32421274 -144552866 - MIR SINE MIR 0 262 81 195 339 108 38 chrX 32421275 32421591 -144552549 + L2 LINE L2 2637 2974 -340 377 303 35 14 chrX 32421741 32421883 -144552257 + L2 LINE L2 3165 3309 -4 821 238 31 35 chrX 32422950 32423177 -144550963 + MIR SINE MIR 34 259 -3 1044 237 93 35 chrX 32423634 32424158 -144549982 + MLT1G LTR MaLR 1 555 0 267 337 12 0 chrX 32425207 32425293 -144548847 - MIR SINE MIR -150 112 26 1709 188 3 13 chrX 32425453 32425756 -144548384 + AluJo SINE Alu 1 300 -12 1445 146 54 0 chrX 32426471 32426731 -144547409 - L1MB3 LINE L1 -220 5963 5690 5394 120 5 0 chrX 32427362 32428195 -144545945 - L1PA15 LINE L1 -7 6158 5322 963 143 6 56 chrX 32428196 32428357 -144545783 - AluSg/x SINE Alu -15 297 145 1948 156 0 7 chrX 32428365 32428667 -144545473 - AluSx SINE Alu -12 300 1 14254 205 10 24 chrX 32428667 32432222 -144541918 - L1MB3 LINE L1 -823 5323 1829 4482 199 44 43 chrX 32432229 32433327 -144540813 - L1PA13 LINE L1 -4586 2201 1103 3503 240 33 17 chrX 32433465 32434337 -144539803 - L1PA13 LINE L1 -5901 886 1 353 148 0 0 chrX 32434347 32434408 -144539732 - L1MA7 LINE L1 -46 6245 6185 298 143 0 63 chrX 32434623 32434686 -144539454 + MLT1B LTR MaLR 1 59 -331 231 36 0 0 chrX 32434791 32434819 -144539321 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 4748 171 51 24 chrX 32434819 32435607 -144538533 + Charlie1 DNA MER1_type 1650 2476 -285 2253 120 0 0 chrX 32435607 32435907 -144538233 - AluSg SINE Alu -10 300 1 4748 171 51 24 chrX 32435907 32436201 -144537939 + Charlie1 DNA MER1_type 2476 2761 0 200 360 40 20 chrX 32436219 32436319 -144537821 + MER5A DNA MER1_type 3 104 -85 252 299 102 24 chrX 32437942 32438069 -144536071 - MIR SINE MIR -61 201 65 491 333 88 31 chrX 32438358 32438676 -144535464 + MER102b DNA MER1_type 6 341 0 1769 177 34 0 chrX 32438985 32439279 -144534861 - AluJo SINE Alu -8 304 1 664 297 38 9 chrX 32439587 32439799 -144534341 - MIR SINE MIR 0 262 45 4437 105 142 95 chrX 32441667 32443085 -144531055 + pTR5 LTR ERV1 31 714 0 401 307 0 10 chrX 32443387 32443488 -144530652 - MIR SINE MIR -133 129 30 545 179 15 22 chrX 32445124 32445258 -144528882 + L1ME1 LINE L1 1986 2118 -4278 * 2473 250 33 18 chrX 32445254 32446191 -144527949 + L1ME1 LINE L1 3099 4049 -2166 1189 175 53 0 chrX 32446191 32446419 -144527721 - MSTA LTR MaLR 0 428 189 5076 88 0 10 chrX 32446443 32447174 -144526966 - L1PB1 LINE L1 -34 6117 5394 1001 105 66 7 chrX 32447174 32447326 -144526814 - THE1B LTR MaLR 0 364 204 5932 17 1 0 chrX 32447426 32448145 -144525995 - L1PA3 LINE L1 -153 6002 5283 3152 90 0 0 chrX 32448141 32448574 -144525566 - THE1B-int LTR MaLR -1147 433 1 * 848 125 8 0 chrX 32448574 32448702 -144525438 - THE1B LTR MaLR 0 364 236 312 157 0 0 chrX 32448711 32448762 -144525378 + MSTA LTR MaLR 378 428 0 1233 85 111 0 chrX 32448766 32448965 -144525175 + L1MA2 LINE L1 6084 6304 0 1974 203 24 7 chrX 32448981 32449504 -144524636 + L1ME1 LINE L1 5232 5761 -474 531 194 9 0 chrX 32449560 32449668 -144524472 + L1ME1 LINE L1 5734 5842 -393 14010 170 20 2 chrX 32449679 32452410 -144521730 + L1PA13 LINE L1 2246 5026 -1120 3490 100 23 18 chrX 32452411 32452979 -144521161 + L1PA13 LINE L1 5585 6155 -8 783 248 45 41 chrX 32453000 32453383 -144520757 + L1ME1 LINE L1 5863 6403 0 1846 230 81 4 chrX 32453385 32453906 -144520234 + L1ME1 LINE L1 5596 6156 -10 2319 73 17 0 chrX 32454075 32454362 -144519778 - AluY SINE Alu -19 292 1 413 234 156 7 chrX 32454410 32454551 -144519589 + MIR SINE MIR 47 208 -54 3550 209 115 101 chrX 32455823 32456261 -144517879 - L1MD3 LINE L1 -147 7848 7417 504 184 19 10 chrX 32456261 32456364 -144517776 - MLT1F1 LTR MaLR -442 125 22 3550 209 115 101 chrX 32456364 32457346 -144516794 - L1MD3 LINE L1 -578 7417 6302 9268 191 26 14 chrX 32457348 32459699 -144514441 + L1PA16 LINE L1 2951 5343 -823 3384 47 0 2 chrX 32459699 32460108 -144514032 + L1PA6 LINE L1 5736 6143 -11 9268 191 26 14 chrX 32460108 32460932 -144513208 + L1PA16 LINE L1 5343 6156 -10 22 0 0 0 chrX 32460932 32460954 -144513186 + AT_rich Low_complexity Low_complexity 1 22 0 2988 213 23 4 chrX 32461027 32461760 -144512380 - L1ME1 LINE L1 -18 6148 5402 1835 111 62 0 chrX 32461860 32462149 -144511991 - LTR26 LTR ERV1 -296 307 1 907 226 16 3 chrX 32462152 32462468 -144511672 - L1ME1 LINE L1 -718 5444 5127 1015 224 63 72 chrX 32462900 32463254 -144510886 - MER39 LTR ERV1 0 707 144 2820 207 2 53 chrX 32463254 32463838 -144510302 + MLT2B3 LTR ERVL 1 554 0 1015 224 63 72 chrX 32463838 32463981 -144510159 - MER39 LTR ERV1 -563 144 1 210 320 134 52 chrX 32464049 32464221 -144509919 - L2 LINE L2 -510 2804 2619 21 36 0 0 chrX 32464239 32464267 -144509873 + AT_rich Low_complexity Low_complexity 1 28 0 453 332 128 24 chrX 32464580 32464878 -144509262 - L2 LINE L2 -846 2468 2140 786 297 56 54 chrX 32464887 32465705 -144508435 - L1ME1 LINE L1 -1227 4919 4100 7559 198 43 31 chrX 32465707 32469023 -144505117 + L1MC1 LINE L1 886 4149 -2464 969 132 0 0 chrX 32469023 32469175 -144504965 + L1MA2 LINE L1 6153 6304 0 7559 198 43 31 chrX 32469175 32471664 -144502476 + L1MC1 LINE L1 4149 6608 -5 230 0 0 32 chrX 32471942 32471973 -144502167 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 36644 48 1 3 chrX 32471973 32474507 -144499633 - L1PA4 LINE L1 -16 6139 3602 2397 94 0 0 chrX 32474507 32474816 -144499324 - AluY SINE Alu -2 309 1 36644 48 1 3 chrX 32474816 32478381 -144495759 - L1PA4 LINE L1 -2553 3602 41 1958 190 226 4 chrX 32479676 32480207 -144493933 + MLT1E1 LTR MaLR 6 654 0 331 309 147 10 chrX 32480243 32480447 -144493693 - L1M4 LINE L1 -2406 5159 4928 2931 83 6 28 chrX 32480542 32481009 -144493131 - L1PA8 LINE L1 -895 5251 4795 7086 48 15 3 chrX 32481009 32481912 -144492228 + L1PA8 LINE L1 5254 6171 -1 411 205 177 76 chrX 32482026 32482275 -144491865 - L1M4 LINE L1 -2749 4816 4543 1464 248 165 55 chrX 32482314 32482333 -144491807 - HAL1 LINE L1 -1 2506 2490 252 59 0 0 chrX 32482333 32482367 -144491773 + (TG)n Simple_repeat Simple_repeat 1 34 0 1464 248 165 55 chrX 32482367 32483700 -144490440 - HAL1 LINE L1 -17 2490 1006 697 270 28 33 chrX 32483825 32484217 -144489923 - L1M4 LINE L1 -3096 4469 4080 3731 188 67 1 chrX 32484333 32485037 -144489103 - MER21B LTR ERV1 -113 750 1 350 324 128 25 chrX 32485039 32485320 -144488820 - L1M4 LINE L1 -3539 4026 3717 1909 131 20 18 chrX 32485322 32485665 -144488475 - L1MA2 LINE L1 0 6304 5961 5147 91 26 8 chrX 32485677 32486454 -144487686 - L1PA13 LINE L1 -3 6160 5370 949 159 19 0 chrX 32486455 32486612 -144487528 - LTR10D LTR ERV1 0 513 354 2900 249 83 53 chrX 32486617 32486943 -144487197 - L1M4 LINE L1 -6216 1349 1034 2067 149 79 30 chrX 32486943 32487372 -144486768 + LTR7 LTR ERV1 1 450 0 2900 249 83 53 chrX 32487372 32488338 -144485802 - L1M4 LINE L1 -6531 1034 19 22 0 0 0 chrX 32488717 32488739 -144485401 + AT_rich Low_complexity Low_complexity 1 22 0 1166 256 114 77 chrX 32488758 32490714 -144483426 - L1MC5 LINE L1 -673 7288 5265 352 304 77 24 chrX 32490749 32491072 -144483068 - L1MC5 LINE L1 -978 5168 4805 2130 139 0 0 chrX 32491072 32491373 -144482767 - AluSx SINE Alu -11 301 1 352 304 77 24 chrX 32491373 32491582 -144482558 - L1MC5 LINE L1 -1341 4805 4608 562 340 84 15 chrX 32491835 32492167 -144481973 - HAL1 LINE L1 -868 1639 1285 4862 104 22 16 chrX 32492172 32492960 -144481180 - L1PA16 LINE L1 -9 6157 5366 2537 216 10 2 chrX 32492962 32493565 -144480575 + L1 LINE L1 4084 4691 -1455 1594 181 3 20 chrX 32493574 32493867 -144480273 - AluJo SINE Alu -23 289 2 1202 145 0 0 chrX 32494165 32494337 -144479803 - AluJb SINE Alu -14 298 127 36171 85 5 10 chrX 32494486 32500662 -144473478 - L1PA6 LINE L1 0 6154 11 253 353 43 0 chrX 32501426 32501542 -144472598 - LTR67 LTR ERVL -336 221 101 2200 108 3 0 chrX 32502593 32502881 -144471259 - AluSc SINE Alu -20 289 1 1751 162 3 34 chrX 32502888 32503185 -144470955 - AluJo SINE Alu -20 292 5 25 0 0 0 chrX 32503980 32504005 -144470135 + AT_rich Low_complexity Low_complexity 1 25 0 2391 189 79 20 chrX 32504711 32505303 -144468837 - L1MD2 LINE L1 -311 6048 5422 2363 101 41 103 chrX 32505407 32505871 -144468269 - L1MC1 LINE L1 0 6333 5899 3847 150 32 10 chrX 32505871 32506749 -144467391 + L1MC1 LINE L1 5341 6053 -280 31191 101 8 53 chrX 32506760 32513205 -144460935 + L1PA7 LINE L1 12 6154 0 1256 145 27 8 chrX 32513201 32513659 -144460481 + L1MC2 LINE L1 5725 6343 -1 * 1844 208 66 43 chrX 32513659 32514192 -144459948 + L1ME1 LINE L1 5603 6147 -19 439 311 12 0 chrX 32514783 32514944 -144459196 + (CA)n Simple_repeat Simple_repeat 2 164 0 1428 142 0 9 chrX 32515028 32515240 -144458900 + AluJo SINE Alu 86 295 -17 228 164 73 36 chrX 32515276 32515331 -144458809 + L1MB5 LINE L1 5416 5472 -698 2698 159 26 48 chrX 32515332 32515897 -144458243 + L1MB5 LINE L1 5622 6174 0 970 196 58 4 chrX 32515900 32516140 -144458000 - L1MDa LINE L1 -4654 1886 1634 1528 151 72 7 chrX 32516142 32516446 -144457694 - L1MC3 LINE L1 -1 7784 7461 1353 201 115 42 chrX 32516607 32516870 -144457270 - L1MDa LINE L1 -4898 1642 1399 3431 67 11 39 chrX 32516870 32517271 -144456869 + MLT2A2 LTR ERVL 1 389 -64 267 54 0 0 chrX 32517271 32517308 -144456832 + (TG)n Simple_repeat Simple_repeat 2 38 0 3431 67 11 39 chrX 32517308 32517372 -144456768 + MLT2A2 LTR ERVL 389 453 0 1353 201 115 42 chrX 32517372 32517675 -144456465 - L1MDa LINE L1 -5141 1399 1035 622 264 47 99 chrX 32518472 32518896 -144455244 - L1MDa LINE L1 -6083 457 56 2085 229 52 6 chrX 32518929 32519580 -144454560 - L1M4 LINE L1 -3173 2973 2293 6570 77 4 40 chrX 32519581 32521236 -144452904 - L1PA13 LINE L1 -4 6159 4533 456 87 0 14 chrX 32521236 32521296 -144452844 - L1PA10 LINE L1 -6 6162 6095 10774 161 21 4 chrX 32521306 32523793 -144450347 - L1P4 LINE L1 -702 5781 3210 * 29774 49 3 3 chrX 32523792 32529940 -144444200 + L1PA4 LINE L1 1 6150 -5 10220 200 13 50 chrX 32529945 32531618 -144442522 - L1P4 LINE L1 -3241 3220 1492 2301 128 14 8 chrX 32531618 32531971 -144442169 - THE1A LTR MaLR 0 355 1 10220 200 13 50 chrX 32531971 32533407 -144440733 - L1P4 LINE L1 -4969 1492 4 * 16444 172 3 12 chrX 32533396 32536476 -144437664 - L1PA13 LINE L1 -1588 5209 2159 290 100 0 20 chrX 32536482 32536532 -144437608 + MADE1 DNA Mariner 1 49 -31 7395 218 151 7 chrX 32536532 32538201 -144435939 - L1PA13 LINE L1 -4878 1909 1 877 260 50 44 chrX 32538206 32538709 -144435431 - L1MEc LINE L1 -3984 3154 2649 1856 198 59 3 chrX 32538712 32539085 -144435055 + MER93a LTR ERV1 1 394 -8 619 248 14 38 chrX 32539157 32539367 -144434773 - L1MEc LINE L1 -5443 1416 1212 21 36 0 0 chrX 32539381 32539409 -144434731 + AT_rich Low_complexity Low_complexity 1 28 0 748 280 48 53 chrX 32539452 32539845 -144434295 - L1MEc LINE L1 -5668 1187 797 491 257 187 14 chrX 32539936 32540150 -144433990 - L1MEc LINE L1 -6598 261 11 356 304 146 13 chrX 32541170 32541328 -144432812 + MER5A DNA MER1_type 11 189 0 3094 173 53 53 chrX 32541495 32542235 -144431905 - L1MB7 LINE L1 -16 6666 5927 868 150 0 0 chrX 32542235 32542362 -144431778 - AluJb SINE Alu -185 127 1 2933 203 58 3 chrX 32542362 32542993 -144431147 - L1MB7 LINE L1 -735 5937 5261 724 80 18 0 chrX 32542993 32543106 -144431034 + (TAGA)n Simple_repeat Simple_repeat 4 118 0 2933 203 58 3 chrX 32543106 32543249 -144430891 - L1MB7 LINE L1 -1411 5261 5127 * 3507 233 10 33 chrX 32543248 32544214 -144429926 - L1MB7 LINE L1 -1916 4728 3785 5996 225 50 41 chrX 32544250 32545940 -144428200 - L1MB7 LINE L1 -4833 1709 5 2120 106 3 0 chrX 32546821 32547141 -144426999 - AluSp SINE Alu 0 321 1 37 69 0 0 chrX 32547198 32547270 -144426870 + AT_rich Low_complexity Low_complexity 1 72 0 289 306 70 36 chrX 32547319 32547649 -144426491 - L1M4 LINE L1 -3161 2985 2636 980 263 26 46 chrX 32547884 32548250 -144425890 - MLT1I LTR MaLR -7 402 5 1667 198 24 18 chrX 32549734 32550072 -144424068 + MER58B DNA MER1_type 2 341 0 696 315 4 37 chrX 32550264 32550505 -144423635 + LTR16C LTR ERVL 36 268 -223 249 108 0 0 chrX 32550513 32550550 -144423590 + (T)n Simple_repeat Simple_repeat 1 37 0 784 263 33 19 chrX 32550550 32550763 -144423377 + LTR16C LTR ERVL 276 491 0 242 248 51 51 chrX 32551124 32551241 -144422899 + L3b LINE CR1 1288 1404 -179 252 308 29 39 chrX 32551275 32551379 -144422761 + MIR SINE MIR 23 125 -137 386 190 0 0 chrX 32551479 32551558 -144422582 - L1MA3 LINE L1 0 6305 6227 24 0 0 0 chrX 32552052 32552076 -144422064 + AT_rich Low_complexity Low_complexity 1 24 0 464 183 167 32 chrX 32552448 32552574 -144421566 - L2 LINE L2 -1 3312 3170 1242 270 98 29 chrX 32552714 32553330 -144420810 - L2 LINE L2 -178 3135 2476 2284 227 99 4 chrX 32553332 32553848 -144420292 - MER69 DNA AcHobo -661 565 1 443 272 201 21 chrX 32553857 32554136 -144420004 - L2 LINE L2 -1206 2108 1780 3252 50 21 5 chrX 32554334 32554756 -144419384 + L1PA8 LINE L1 5741 6169 -3 2339 135 3 13 chrX 32555544 32555921 -144418219 - L1PB4 LINE L1 -3 6153 5781 419 215 8 0 chrX 32555921 32556042 -144418098 + (TA)n Simple_repeat Simple_repeat 2 123 0 288 111 0 111 chrX 32556042 32556105 -144418035 - L1M3 LINE L1 -364 5792 5741 261 350 158 19 chrX 32556321 32556581 -144417559 + L2 LINE L2 2928 3223 -49 342 305 102 0 chrX 32556755 32556873 -144417267 - L2 LINE L2 0 3313 3184 1094 276 147 25 chrX 32557032 32557740 -144416400 - L2 LINE L2 -144 3169 2366 482 262 138 0 chrX 32557778 32557923 -144416217 - L2 LINE L2 -1633 1681 1517 385 293 26 69 chrX 32558248 32558364 -144415776 - MIR SINE MIR -64 144 34 200 216 0 0 chrX 32558801 32558838 -144415302 + CT-rich Low_complexity Low_complexity 3 39 0 225 94 0 0 chrX 32559265 32559297 -144414843 + (GGAGA)n Simple_repeat Simple_repeat 3 34 0 6277 158 68 41 chrX 32559403 32560734 -144413406 - Charlie1a DNA MER1_type -2 1453 88 13960 123 14 1 chrX 32560762 32562828 -144411312 + Tigger1 DNA MER2_type 2 2093 -325 7720 136 8 7 chrX 32562829 32565165 -144408975 + L1MA1 LINE L1 3958 6298 -4 2182 125 20 15 chrX 32565175 32565518 -144408622 + Tigger1 DNA MER2_type 2073 2417 -1 30 59 0 0 chrX 32565660 32565711 -144408429 + AT_rich Low_complexity Low_complexity 1 51 0 3757 227 61 27 chrX 32565738 32566361 -144407779 - L1MD1 LINE L1 0 6636 6035 1734 181 0 26 chrX 32566361 32566671 -144407469 - AluJo SINE Alu -10 302 1 3757 227 61 27 chrX 32566671 32566864 -144407276 - L1MD1 LINE L1 -601 6035 5850 475 32 0 0 chrX 32566864 32566926 -144407214 + L1PA2 LINE L1 6090 6151 -4 3757 227 61 27 chrX 32566926 32566959 -144407181 - L1MD1 LINE L1 -786 5850 5820 189 0 0 0 chrX 32566959 32566980 -144407160 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3757 227 61 27 chrX 32566980 32567227 -144406913 - L1MD1 LINE L1 -816 5820 5583 243 0 0 0 chrX 32567227 32567254 -144406886 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 3757 227 61 27 chrX 32567254 32569816 -144404324 - L1MD1 LINE L1 -1053 5583 2654 1197 246 72 25 chrX 32569816 32570177 -144403963 - MLT1C LTR MaLR -2 465 88 5880 223 89 87 chrX 32570180 32571493 -144402647 - L1MD1 LINE L1 -3875 2665 1357 2427 90 3 0 chrX 32571493 32571805 -144402335 - AluSq SINE Alu 0 313 1 5880 223 89 87 chrX 32571805 32572099 -144402041 - L1MD1 LINE L1 -5183 1357 1065 1805 171 3 10 chrX 32572099 32572398 -144401742 + AluJo SINE Alu 1 297 -15 5880 223 89 87 chrX 32572398 32573376 -144400764 - L1MD1 LINE L1 -5475 1065 76 1007 204 36 14 chrX 32573532 32573753 -144400387 - L1ME3A LINE L1 -8 6162 5937 355 212 40 20 chrX 32573772 32573871 -144400269 - L1ME3A LINE L1 -328 5842 5742 261 89 71 54 chrX 32573876 32573932 -144400208 - MLT2B3 LTR ERVL 0 515 459 1163 240 73 67 chrX 32573952 32574474 -144399666 - MLT2B3 LTR ERVL -39 515 1 1292 259 33 35 chrX 32574474 32575134 -144399006 - L1ME3A LINE L1 -429 5741 5084 742 196 159 0 chrX 32577312 32577475 -144396665 + MER5A DNA MER1_type 1 189 0 237 376 39 0 chrX 32577568 32577684 -144396456 + MIR SINE MIR 14 143 -68 1080 274 84 23 chrX 32579192 32579749 -144394391 - L1MC4a LINE L1 -127 5994 5402 2223 107 0 0 chrX 32580032 32580340 -144393800 + AluSx SINE Alu 1 308 -4 210 37 0 0 chrX 32580457 32580484 -144393656 + (CAA)n Simple_repeat Simple_repeat 1 27 0 414 69 0 0 chrX 32581138 32581196 -144392944 + (CA)n Simple_repeat Simple_repeat 1 58 0 2119 188 14 2 chrX 32582175 32582589 -144391551 - MER63B DNA MER1_type -13 423 5 3974 289 59 18 chrX 32582829 32584381 -144389759 - HERV16 LTR ERVL -1905 3091 1646 1166 248 44 16 chrX 32584768 32585430 -144388710 - HERV16 LTR ERVL -3859 1137 346 926 235 52 0 chrX 32585455 32585685 -144388455 - HERV16 LTR ERVL -4754 242 1 1296 282 78 24 chrX 32585685 32586096 -144388044 - LTR16A LTR ERVL 0 450 18 227 316 0 0 chrX 32586228 32586285 -144387855 - Tigger7 DNA MER2_type -260 79 23 * 294 211 14 0 chrX 32586281 32586352 -144387788 - MER116 DNA Mariner -8 72 1 582 128 0 0 chrX 32586521 32586607 -144387533 + AluSg/x SINE Alu 216 301 -11 446 299 103 17 chrX 32587349 32587466 -144386674 + L2 LINE L2 3137 3263 -9 255 79 0 0 chrX 32588082 32588120 -144386020 + (TG)n Simple_repeat Simple_repeat 2 39 0 986 223 193 3 chrX 32588232 32588532 -144385608 - MLT1G1 LTR MaLR -6 589 233 2121 94 21 3 chrX 32588704 32588991 -144385149 + AluSc SINE Alu 1 292 -17 309 280 10 0 chrX 32589075 32589235 -144384905 + (TG)n Simple_repeat Simple_repeat 1 161 0 2374 81 0 0 chrX 32589287 32589582 -144384558 - AluSc SINE Alu -14 295 1 3247 231 41 24 chrX 32590129 32590382 -144383758 - L1ME1 LINE L1 -19 6147 5900 2185 115 30 33 chrX 32590382 32590747 -144383393 - THE1B LTR MaLR 0 364 1 12087 81 2 7 chrX 32590747 32592334 -144381806 - THE1B-int LTR MaLR 0 1580 1 2136 130 19 35 chrX 32592334 32592704 -144381436 - THE1B LTR MaLR 0 364 1 3247 231 41 24 chrX 32592704 32593450 -144380690 - L1ME1 LINE L1 -265 5901 5129 33 0 0 0 chrX 32593450 32593483 -144380657 + AT_rich Low_complexity Low_complexity 1 33 0 14642 207 8 14 chrX 32593483 32598259 -144375881 - L1PB1 LINE L1 0 6867 2048 4520 122 39 0 chrX 32599296 32600433 -144373707 - L1PB1 LINE L1 -4814 2049 634 1120 157 5 0 chrX 32600433 32600630 -144373510 - L1PB1 LINE L1 -6663 200 3 1995 226 87 4 chrX 32600639 32601319 -144372821 - L1M4 LINE L1 -1011 5135 4400 1505 101 18 0 chrX 32601327 32601555 -144372585 - L1MA6 LINE L1 0 6300 6069 2526 117 9 41 chrX 32601556 32601898 -144372242 + L1MA6 LINE L1 5625 5952 -348 2155 113 7 0 chrX 32601898 32602191 -144371949 + AluSq SINE Alu 1 295 -18 2526 117 9 41 chrX 32602191 32602285 -144371855 + L1MA6 LINE L1 5952 6047 -253 236 291 10 0 chrX 32602335 32602438 -144371702 - L1M4 LINE L1 -1786 4360 4257 335 299 48 21 chrX 32602503 32602903 -144371237 - L1MDa LINE L1 -4436 1693 1330 411 279 103 20 chrX 32602954 32603255 -144370885 - L1MDa LINE L1 -4887 1232 907 444 382 27 35 chrX 32603276 32603650 -144370490 - L1MDa LINE L1 -5212 907 537 324 315 88 42 chrX 32603843 32604059 -144370081 - L1MDa LINE L1 -5887 232 7 23 54 0 0 chrX 32605044 32605081 -144369059 + AT_rich Low_complexity Low_complexity 1 37 0 350 288 24 0 chrX 32605323 32605448 -144368692 + MER103 DNA DNA 11 138 -28 420 267 76 9 chrX 32605653 32605758 -144368382 - MIR SINE MIR -134 128 17 308 281 37 0 chrX 32606592 32606674 -144367466 - L2 LINE L2 0 3313 3229 3518 63 2 2 chrX 32606674 32607136 -144367004 + HERV17 LTR ERV1 3293 3754 -4872 * 14021 45 1 0 chrX 32607115 32608857 -144365283 + HERV17 LTR ERV1 5405 7147 -1479 304 26 0 0 chrX 32608853 32608892 -144365248 + HERV17 LTR ERV1 7510 7548 -1078 * 2104 60 3 27 chrX 32608882 32609181 -144364959 + HERV17 LTR ERV1 8335 8626 0 2125 100 3 12 chrX 32609181 32609510 -144364630 + LTR17 LTR ERV1 1 326 -454 217 238 159 0 chrX 32609523 32609586 -144364554 - L2 LINE L2 -61 3252 3180 789 299 100 0 chrX 32609812 32610093 -144364047 - L2 LINE L2 -182 3131 2823 635 194 9 0 chrX 32610345 32610560 -144363580 + CT-rich Low_complexity Low_complexity 1 216 0 820 163 7 0 chrX 32610563 32610731 -144363409 - FRAM SINE Alu 0 176 35 616 266 21 31 chrX 32611148 32611340 -144362800 + L2 LINE L2 2679 2868 -446 1112 291 71 3 chrX 32611383 32611775 -144362365 - LTR16A LTR ERVL 0 450 32 2112 122 72 76 chrX 32611775 32612235 -144361905 + MLT1C LTR MaLR 1 458 -9 215 271 120 90 chrX 32612424 32612557 -144361583 + L2 LINE L2 3136 3272 0 268 296 31 41 chrX 32613095 32613193 -144360947 + MIR SINE MIR 34 130 -132 294 186 0 51 chrX 32613624 32613683 -144360457 + L2 LINE L2 3201 3256 -16 1503 282 67 14 chrX 32613782 32614289 -144359851 + L1ME1 LINE L1 36 569 -5827 2145 153 20 112 chrX 32614293 32614837 -144359303 + MLT1D LTR MaLR 2 495 -10 264 203 243 10 chrX 32614956 32615046 -144359094 + L1ME1 LINE L1 4349 4417 -1798 2285 105 3 0 chrX 32615046 32615342 -144358798 + AluSq SINE Alu 1 297 -16 264 203 243 10 chrX 32615342 32615453 -144358687 + L1ME1 LINE L1 4417 4597 -1618 1101 195 22 19 chrX 32615464 32615488 -144358652 + L1ME1 LINE L1 5355 5377 -854 1737 153 27 27 chrX 32615488 32615789 -144358351 + AluJo SINE Alu 1 301 -11 1101 195 22 19 chrX 32615789 32616032 -144358108 + L1ME1 LINE L1 5377 5622 -609 257 193 0 0 chrX 32616035 32616092 -144358048 + LTR28 LTR ERV1 1 57 -963 * 2239 146 54 0 chrX 32616064 32616454 -144357686 + MER61C LTR ERV1 14 424 -10 1572 203 30 16 chrX 32616466 32616830 -144357310 + L1ME1 LINE L1 5620 5988 -247 327 159 127 0 chrX 32616831 32616894 -144357246 + LTR26 LTR ERV1 250 320 -283 1918 122 16 22 chrX 32616920 32617232 -144356908 + LTR26 LTR ERV1 291 600 -3 1208 232 70 55 chrX 32617253 32617693 -144356447 + L1ME3A LINE L1 5455 5901 -269 280 250 33 117 chrX 32617799 32617979 -144356161 + L1ME3A LINE L1 5962 6126 -44 1899 167 3 3 chrX 32618022 32618315 -144355825 + AluJb SINE Alu 1 293 -19 385 273 83 25 chrX 32618320 32618441 -144355699 - MER5B DNA MER1_type -50 128 1 182 241 147 60 chrX 32618565 32618681 -144355459 + L2 LINE L2 3144 3269 -44 2144 123 128 10 chrX 32618818 32619201 -144354939 + MSTA LTR MaLR 1 428 0 1525 172 81 47 chrX 32620254 32620301 -144353839 + LTR37A LTR ERV1 1 45 -381 1168 204 0 5 chrX 32620301 32620522 -144353618 - MER58A DNA MER1_type -1 223 4 1525 172 81 47 chrX 32620522 32620741 -144353399 + LTR37A LTR ERV1 45 288 -138 504 86 0 0 chrX 32620741 32620811 -144353329 + (TA)n Simple_repeat Simple_repeat 2 71 0 1525 172 81 47 chrX 32620811 32620949 -144353191 + LTR37A LTR ERV1 288 420 -6 193 275 0 75 chrX 32620997 32621077 -144353063 + L2 LINE L2 3167 3240 -73 198 299 61 76 chrX 32621451 32621648 -144352492 - MIR SINE MIR -46 216 23 392 253 0 0 chrX 32621958 32622053 -144352087 + L1MB8 LINE L1 5668 5762 -416 1178 152 25 12 chrX 32622109 32622352 -144351788 + L1MB8 LINE L1 5924 6169 -9 21 0 0 0 chrX 32622458 32622479 -144351661 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 32623329 32623351 -144350789 + AT_rich Low_complexity Low_complexity 1 22 0 439 175 79 0 chrX 32624048 32624162 -144349978 + MER103 DNA DNA 40 162 -4 1702 180 0 14 chrX 32624568 32624863 -144349277 - AluJo SINE Alu -21 291 1 2047 127 3 0 chrX 32624982 32625282 -144348858 - AluJb SINE Alu -9 303 3 375 78 0 0 chrX 32625376 32625427 -144348713 + (TCCCC)n Simple_repeat Simple_repeat 2 52 0 2169 116 0 0 chrX 32625427 32625730 -144348410 - AluY SINE Alu -8 303 1 241 298 0 24 chrX 32626093 32626177 -144347963 + CT-rich Low_complexity Low_complexity 3 84 0 384 309 60 39 chrX 32626277 32626510 -144347630 - L3 LINE CR1 -660 917 680 21 0 0 0 chrX 32627532 32627553 -144346587 + AT_rich Low_complexity Low_complexity 1 21 0 970 287 14 3 chrX 32627685 32627993 -144346147 + L2 LINE L2 2738 3048 -265 3397 55 2 73 chrX 32628003 32628510 -144345630 - L1PA8 LINE L1 -16 6156 5686 250 29 0 0 chrX 32628516 32628551 -144345589 + L1PA8 LINE L1 5644 5678 -494 2141 128 0 0 chrX 32628598 32628902 -144345238 - AluSc SINE Alu -5 304 1 210 191 0 0 chrX 32630182 32630224 -144343916 + (CATA)n Simple_repeat Simple_repeat 1 42 0 278 214 333 0 chrX 32630458 32630542 -144343598 + MER5B DNA MER1_type 67 178 0 1139 176 11 0 chrX 32630642 32630829 -144343311 - MER5A DNA MER1_type 0 189 1 536 251 40 6 chrX 32630885 32631060 -144343080 + L1M4 LINE L1 3788 3968 -2178 * 3193 224 33 16 chrX 32631059 32632328 -144341812 - L1M4c LINE L1 -3069 3575 2287 202 94 0 31 chrX 32634197 32634229 -144339911 + (TTC)n Simple_repeat Simple_repeat 3 33 0 6236 207 46 43 chrX 32634230 32634251 -144339889 - L1M4c LINE L1 -4657 2168 2149 873 129 8 0 chrX 32634251 32634383 -144339757 - FLAM_C SINE Alu 0 133 1 6236 207 46 43 chrX 32634383 32634955 -144339185 - L1M4c LINE L1 -4676 2149 1581 2237 87 3 6 chrX 32634955 32635266 -144338874 - L1PA11 LINE L1 0 6174 5865 6236 207 46 43 chrX 32635266 32636645 -144337495 - L1M4c LINE L1 -5244 1581 1 351 44 0 0 chrX 32637437 32637482 -144336658 + (TG)n Simple_repeat Simple_repeat 2 46 0 245 158 32 179 chrX 32638367 32638462 -144335678 - L2 LINE L2 -6 3307 3227 2199 113 14 0 chrX 32638920 32639213 -144334927 + AluSx SINE Alu 1 297 -15 239 130 0 22 chrX 32639373 32639419 -144334721 + (TTTTC)n Simple_repeat Simple_repeat 1 45 0 1399 228 75 61 chrX 32639426 32640004 -144334136 - L2 LINE L2 -1 3312 2713 196 280 0 20 chrX 32640385 32640435 -144333705 + L2 LINE L2 3182 3230 -83 736 265 63 5 chrX 32640619 32640842 -144333298 + MER97c DNA MER1_type? 2 237 -853 5083 230 3 11 chrX 32640873 32642981 -144331159 + L1PA13 LINE L1 1 2444 -4353 2394 106 3 0 chrX 32642981 32643292 -144330848 + AluSp SINE Alu 2 313 0 5083 230 3 11 chrX 32643292 32644428 -144329712 + L1PA13 LINE L1 2444 3587 -3210 2334 132 3 0 chrX 32644457 32644813 -144329327 + L1PA15 LINE L1 5805 6161 -4 9979 220 35 30 chrX 32644856 32646294 -144327846 - L1M3 LINE L1 -516 6627 5198 2081 90 52 10 chrX 32646294 32646583 -144327557 - AluY SINE Alu -10 301 1 1866 149 7 4 chrX 32646589 32646870 -144327270 - AluJb SINE Alu -20 292 11 9979 220 35 30 chrX 32646870 32648732 -144325408 - L1M3 LINE L1 -1949 5194 3183 2255 131 0 3 chrX 32648732 32649044 -144325096 - AluSx SINE Alu -1 311 1 9979 220 35 30 chrX 32649044 32650177 -144323963 - L1M3 LINE L1 -3960 3183 2058 278 256 16 31 chrX 32650275 32650404 -144323736 - L1M3 LINE L1 -6903 127 1 566 224 14 0 chrX 32650459 32650602 -144323538 - L1MD2 LINE L1 -13 6346 6202 2255 101 0 0 chrX 32650626 32650913 -144323227 + AluSg SINE Alu 1 287 -23 806 181 62 39 chrX 32651422 32651682 -144322458 - MER20B DNA MER1_type -3 780 515 1078 285 133 6 chrX 32651784 32652250 -144321890 - MER20B DNA MER1_type -256 527 3 744 331 167 34 chrX 32652472 32652974 -144321166 - L2 LINE L2 -359 2955 2387 2210 130 0 0 chrX 32653101 32653408 -144320732 + AluSx SINE Alu 1 307 -5 566 301 83 5 chrX 32655405 32655621 -144318519 - MIR SINE MIR -15 247 15 399 292 19 32 chrX 32656213 32656429 -144317711 - L1MEd LINE L1 -4923 1196 984 * 1187 115 5 55 chrX 32656428 32656645 -144317495 + L1P5 LINE L1 5521 5726 -428 277 318 38 15 chrX 32656637 32656769 -144317371 - L1MEd LINE L1 -5422 697 563 * 303 340 30 0 chrX 32657035 32657135 -144317005 - L1MEd LINE L1 -5928 191 89 6145 95 6 7 chrX 32657706 32658889 -144315251 + L1PB1 LINE L1 4991 6172 0 29 78 0 0 chrX 32659012 32659076 -144315064 + AT_rich Low_complexity Low_complexity 1 64 0 260 298 84 8 chrX 32659509 32659640 -144314500 + L2 LINE L2 1281 1421 -1893 462 194 0 11 chrX 32659718 32659811 -144314329 - L1MC5 LINE L1 -60 7901 7810 2403 136 84 16 chrX 32659881 32660309 -144313831 - MSTB2 LTR MaLR 0 457 1 26 0 0 0 chrX 32660436 32660462 -144313678 + AT_rich Low_complexity Low_complexity 1 26 0 607 295 102 57 chrX 32660490 32660978 -144313162 + L2 LINE L2 1713 2222 -1092 357 314 92 7 chrX 32661942 32662095 -144312045 - MIR SINE MIR -93 169 4 1861 155 10 33 chrX 32662131 32662434 -144311706 - AluJb SINE Alu -7 305 10 835 189 127 50 chrX 32662586 32662846 -144311294 - MLT1G LTR MaLR 0 590 311 350 125 12 0 chrX 32662856 32662936 -144311204 + (TC)n Simple_repeat Simple_repeat 1 81 0 294 188 114 100 chrX 32662959 32663109 -144311031 - MLT1F1 LTR MaLR -365 225 72 311 276 103 0 chrX 32663353 32663440 -144310700 + L2 LINE L2 3208 3303 -10 848 253 112 23 chrX 32663698 32664168 -144309972 + MLT1G1 LTR MaLR 10 546 -9 391 362 9 0 chrX 32664440 32664556 -144309584 + MER5A DNA MER1_type 69 185 -4 3303 104 10 0 chrX 32664585 32665087 -144309053 + L1PA16 LINE L1 5467 5973 -193 698 222 45 17 chrX 32666942 32667118 -144307022 + MIR SINE MIR 79 259 -3 273 244 33 67 chrX 32667282 32667372 -144306768 + L2 LINE L2 3225 3311 -2 794 147 28 0 chrX 32667549 32667692 -144306448 - L1MA9 LINE L1 -5 6307 6161 718 224 217 41 chrX 32668753 32669172 -144304968 - MLT1H LTR MaLR -3 546 12 455 324 22 32 chrX 32669248 32669433 -144304707 + MIR3 SINE MIR 3 185 -23 528 314 168 8 chrX 32670108 32670471 -144303669 + L2 LINE L2 1931 2351 -963 2543 295 58 11 chrX 32670750 32671857 -144302283 + ERVL LTR ERVL 4179 5396 -368 277 292 56 49 chrX 32672192 32672336 -144301804 + LTR33A LTR ERVL 7 151 -372 396 250 45 8 chrX 32672477 32672609 -144301531 + LTR33A LTR ERVL 331 467 -56 2569 130 23 30 chrX 32672857 32673294 -144300846 - Tigger2a DNA MER2_type 0 434 1 23 0 0 0 chrX 32673575 32673598 -144300542 + AT_rich Low_complexity Low_complexity 1 23 0 9274 136 30 4 chrX 32673602 32676281 -144297859 - L1MA2 LINE L1 0 7723 4969 4495 200 23 7 chrX 32676276 32677603 -144296537 - L1MA2 LINE L1 -2833 4732 3380 * 5621 171 40 23 chrX 32677603 32678731 -144295409 - L1MA2 LINE L1 -6397 1168 22 4639 178 45 37 chrX 32678902 32680096 -144294044 - L1MD2 LINE L1 -3 6750 5546 * 39743 64 0 3 chrX 32680093 32686263 -144287877 - L1PA5 LINE L1 0 6154 1 10069 220 45 27 chrX 32686262 32686353 -144287787 - L1MD2 LINE L1 -978 5562 5474 * 1864 133 50 0 chrX 32686353 32686632 -144287508 + AluSg SINE Alu 1 293 -17 10069 220 45 27 chrX 32686632 32687168 -144286972 - L1MD2 LINE L1 -1066 5474 4949 1905 122 6 35 chrX 32687168 32687513 -144286627 - L1MA2 LINE L1 0 6304 5970 10069 220 45 27 chrX 32687513 32687630 -144286510 - L1MD2 LINE L1 -1591 4949 4836 243 61 0 0 chrX 32687630 32687663 -144286477 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2080 120 0 0 chrX 32687665 32687949 -144286191 - AluSq SINE Alu -29 284 1 10069 220 45 27 chrX 32687949 32688015 -144286125 - L1MD2 LINE L1 -1704 4836 4773 14541 125 18 27 chrX 32688015 32690454 -144283686 - Tigger1 DNA MER2_type 0 2418 1 10069 220 45 27 chrX 32690454 32692757 -144281383 - L1MD2 LINE L1 -1767 4773 2365 216 0 0 0 chrX 32692757 32692781 -144281359 + (TG)n Simple_repeat Simple_repeat 2 25 0 10069 220 45 27 chrX 32692781 32693285 -144280855 - L1MD2 LINE L1 -4175 2365 1872 861 204 87 0 chrX 32693289 32693528 -144280612 - L1MD2 LINE L1 -4538 1933 1572 2458 51 0 3 chrX 32693696 32693991 -144280149 - AluY SINE Alu -16 295 2 219 69 0 0 chrX 32694655 32694684 -144279456 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 342 299 82 17 chrX 32695698 32696103 -144278037 - L1M4 LINE L1 -957 5189 4759 355 304 35 101 chrX 32696155 32696501 -144277639 - L1M4 LINE L1 -1456 4690 4368 233 216 0 0 chrX 32696691 32696742 -144277398 + L1ME LINE L1 5571 5621 -500 335 338 46 7 chrX 32696744 32696895 -144277245 + L1ME4a LINE L1 5949 6105 -16 530 220 28 0 chrX 32697010 32697119 -144277021 + MIR SINE MIR 36 147 -115 476 243 26 26 chrX 32698534 32698686 -144275454 + MIR SINE MIR 111 262 0 207 194 0 0 chrX 32699588 32699624 -144274516 + CT-rich Low_complexity Low_complexity 4 39 0 4165 119 118 93 chrX 32699663 32700243 -144273897 - L1MC3 LINE L1 0 7785 7221 260 295 51 0 chrX 32700243 32700321 -144273819 - MLT1F1 LTR MaLR -436 131 50 1735 93 24 0 chrX 32700330 32700578 -144273562 - L1PA11 LINE L1 -3 6171 5918 4165 119 118 93 chrX 32700578 32700964 -144273176 - L1MC3 LINE L1 -571 7214 6706 1399 182 30 30 chrX 32700973 32701242 -144272898 + AluJo SINE Alu 37 305 -7 6668 154 23 22 chrX 32701245 32702515 -144271625 - L1MC3 LINE L1 -1054 6731 5461 11019 202 18 12 chrX 32702520 32704153 -144269987 + L1PB1 LINE L1 1669 3306 -2840 2185 130 0 7 chrX 32704153 32704453 -144269687 + AluSq SINE Alu 1 298 -15 11019 202 18 12 chrX 32704453 32705845 -144268295 + L1PB1 LINE L1 3306 4687 -1459 5630 110 28 1 chrX 32705845 32707041 -144267099 + L1PB1 LINE L1 4928 6147 -4 1060 166 27 10 chrX 32707041 32707379 -144266761 - L1MC3 LINE L1 -743 5403 5127 5252 234 34 17 chrX 32707381 32708075 -144266065 - L1MC3 LINE L1 -1043 5103 4422 2286 96 7 7 chrX 32708075 32708377 -144265763 - AluSq SINE Alu -11 302 1 5252 234 34 17 chrX 32708377 32709260 -144264880 - L1MC3 LINE L1 -1724 4422 3499 1074 164 17 58 chrX 32709265 32709323 -144264817 - MER33 DNA MER1_type -2304 281 222 2237 133 0 0 chrX 32709323 32709632 -144264508 + AluSx SINE Alu 1 309 -3 1074 164 17 58 chrX 32709632 32709865 -144264275 - MER33 DNA MER1_type -2363 222 2 272 170 0 0 chrX 32709866 32709919 -144264221 + MER97a DNA MER1_type? 197 249 -645 208 250 0 0 chrX 32710721 32710769 -144263371 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 186 294 0 0 chrX 32710957 32711008 -144263132 - MIR SINE MIR -103 159 109 2997 128 14 50 chrX 32711086 32711649 -144262491 - L1MA10 LINE L1 -1 6333 5791 278 343 9 94 chrX 32711702 32711915 -144262225 + MIR SINE MIR 67 261 -1 506 274 139 30 chrX 32712147 32712348 -144261792 - MIR SINE MIR -35 227 5 293 315 56 28 chrX 32712895 32713003 -144261137 - MIR3 SINE MIR -87 121 11 226 297 59 20 chrX 32713420 32713521 -144260619 - L2 LINE L2 0 3313 3209 236 218 18 0 chrX 32714337 32714392 -144259748 - Charlie8 DNA MER1_type -2227 190 135 221 313 16 0 chrX 32714508 32714572 -144259568 + L2 LINE L2 3249 3313 0 2014 128 0 0 chrX 32715776 32716050 -144258090 + AluSx SINE Alu 24 297 -15 352 183 19 39 chrX 32716197 32716301 -144257839 + L1MB2 LINE L1 6070 6171 0 289 291 24 39 chrX 32717062 32717189 -144256951 + L2 LINE L2 3182 3306 -7 384 264 33 77 chrX 32717669 32717851 -144256289 + L3b LINE CR1 1223 1396 -187 573 214 12 69 chrX 32718130 32718303 -144255837 - MER20 DNA MER1_type -56 163 1 356 385 42 35 chrX 32720676 32720962 -144253178 + L1MDa LINE L1 1 288 -6252 2196 216 126 27 chrX 32721482 32722416 -144251724 + L1MDa LINE L1 956 1935 -4605 1282 258 125 31 chrX 32722417 32723174 -144250966 + L1MDa LINE L1 2259 3060 -3480 1899 115 51 63 chrX 32723174 32723505 -144250635 + MER1B DNA MER1_type 1 327 -12 1749 218 57 32 chrX 32723505 32723749 -144250391 + L1MDa LINE L1 3101 3338 -3202 2378 107 0 0 chrX 32723749 32724058 -144250082 + AluSx SINE Alu 1 309 -3 1749 218 57 32 chrX 32724058 32724429 -144249711 + L1MDa LINE L1 3338 3731 -2809 818 243 81 21 chrX 32724458 32724792 -144249348 - L1M4 LINE L1 -2392 3754 3401 254 258 16 0 chrX 32725596 32725658 -144248482 - MIR3 SINE MIR -23 185 123 335 219 27 0 chrX 32726676 32726749 -144247391 + L2 LINE L2 3232 3306 -7 333 270 141 31 chrX 32726918 32727081 -144247059 + MIR SINE MIR 58 238 -24 268 204 30 23 chrX 32730051 32730183 -144243957 + GA-rich Low_complexity Low_complexity 1 133 0 1604 136 62 49 chrX 32731592 32731841 -144242299 + L1MD3 LINE L1 7684 7939 -56 2405 63 3 47 chrX 32731841 32732160 -144241980 - AluSp SINE Alu -8 305 1 1604 136 62 49 chrX 32732160 32732218 -144241922 + L1MD3 LINE L1 7939 7995 0 838 136 0 50 chrX 32732274 32732414 -144241726 + FLAM_C SINE Alu 1 133 0 1952 103 8 0 chrX 32736046 32736309 -144237831 + AluSx SINE Alu 38 302 -10 742 128 37 0 chrX 32736309 32736413 -144237727 + AluJo SINE Alu 29 136 -176 27 81 0 0 chrX 32736447 32736509 -144237631 + AT_rich Low_complexity Low_complexity 1 62 0 2349 150 40 2 chrX 32738217 32738617 -144235523 + L1MB2 LINE L1 5755 6169 -2 384 22 0 0 chrX 32739605 32739650 -144234490 + (CA)n Simple_repeat Simple_repeat 2 46 0 1762 147 0 33 chrX 32740222 32740528 -144233612 + AluJo SINE Alu 1 296 -16 219 238 0 0 chrX 32741530 32741572 -144232568 + polypurine Low_complexity Low_complexity 4 45 0 2356 254 58 44 chrX 32741859 32742306 -144231834 + L2 LINE L2 1042 1481 -1833 861 291 78 26 chrX 32742306 32742691 -144231449 - MLT1I LTR MaLR -2 407 3 2356 254 58 44 chrX 32742691 32742902 -144231238 + L2 LINE L2 1481 1716 -1598 1733 184 0 0 chrX 32742902 32743221 -144230919 + AluJo SINE Alu 1 319 0 2356 254 58 44 chrX 32743221 32743360 -144230780 + L2 LINE L2 1716 1852 -1462 1646 108 21 21 chrX 32743372 32743612 -144230528 - MSTA LTR MaLR 0 428 189 4231 85 9 0 chrX 32743612 32744156 -144229984 - L1PA8 LINE L1 -1 6171 5623 3289 80 0 12 chrX 32744156 32744715 -144229425 + L1PA8A LINE L1 4930 5479 -652 2131 95 18 11 chrX 32744715 32745019 -144229121 + AluSx SINE Alu 1 312 0 3289 80 0 12 chrX 32745019 32745217 -144228923 + L1PA8A LINE L1 5479 5678 -453 1388 108 31 0 chrX 32745217 32745412 -144228728 - MSTA LTR MaLR -227 201 1 1012 306 73 23 chrX 32745414 32745855 -144228285 + L2 LINE L2 1859 2321 -993 232 353 12 0 chrX 32745891 32745976 -144228164 - MIR3 SINE MIR -36 172 87 1816 163 0 10 chrX 32746575 32746884 -144227256 + AluSx SINE Alu 1 306 0 218 342 0 13 chrX 32747072 32747151 -144226989 + MIR3 SINE MIR 103 180 -28 1664 149 60 26 chrX 32747201 32747503 -144226637 + AluJo SINE Alu 1 312 0 180 0 0 0 chrX 32747648 32747668 -144226472 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1668 148 10 64 chrX 32747671 32747969 -144226171 - AluJb SINE Alu -30 282 1 1634 258 161 55 chrX 32747998 32748428 -144225712 + L1M4 LINE L1 2965 3348 -2798 2300 88 3 0 chrX 32748428 32748722 -144225418 + AluSg SINE Alu 1 295 -15 1634 258 161 55 chrX 32748722 32748733 -144225407 + L1M4 LINE L1 3348 3356 -2790 2205 116 20 0 chrX 32748733 32749034 -144225106 + AluSx SINE Alu 1 307 -5 1634 258 161 55 chrX 32749034 32749365 -144224775 + L1M4 LINE L1 3356 3651 -2495 2241 123 0 0 chrX 32749365 32749667 -144224473 - AluSx SINE Alu -10 302 1 1634 258 161 55 chrX 32749667 32750230 -144223910 + L1M4 LINE L1 3651 4443 -1703 291 261 125 45 chrX 32750326 32750502 -144223638 + L1ME3A LINE L1 5927 6116 -54 2516 50 0 3 chrX 32750549 32750847 -144223293 - AluY SINE Alu -14 297 1 223 382 59 0 chrX 32751025 32751148 -144222992 + MIR SINE MIR 17 147 -61 183 344 172 7 chrX 32751749 32751900 -144222240 + MIR SINE MIR 1 176 -86 1940 116 38 27 chrX 32752228 32752521 -144221619 + AluSx SINE Alu 1 296 -16 1164 231 0 22 chrX 32752892 32753121 -144221019 - MER58A DNA MER1_type 0 224 1 757 181 144 12 chrX 32753129 32753289 -144220851 - MER5A DNA MER1_type 0 189 9 416 291 99 14 chrX 32753305 32753338 -144220802 + MER5B DNA MER1_type 17 46 -132 240 35 0 0 chrX 32753338 32753367 -144220773 + (CA)n Simple_repeat Simple_repeat 2 30 0 416 291 99 14 chrX 32753367 32753474 -144220666 + MER5B DNA MER1_type 46 169 -9 2451 90 0 0 chrX 32753756 32754068 -144220072 + AluSx SINE Alu 1 312 0 787 174 133 31 chrX 32755885 32756081 -144218059 - MER58A DNA MER1_type 0 224 9 2381 77 0 0 chrX 32756146 32756432 -144217708 + AluSg SINE Alu 1 286 -24 2635 107 79 60 chrX 32756601 32757021 -144217119 - MSTC LTR MaLR 0 428 1 1957 147 3 0 chrX 32757270 32757562 -144216578 - AluJb SINE Alu -19 293 1 252 248 238 0 chrX 32757710 32757811 -144216329 - MER5A DNA MER1_type 0 189 65 226 268 62 62 chrX 32758322 32758434 -144215706 + MLT1H1 LTR MaLR 37 148 -407 268 250 238 12 chrX 32758597 32758765 -144215375 + L1ME4a LINE L1 5843 6048 -73 1705 100 4 0 chrX 32758840 32759070 -144215070 - AluSq SINE Alu -11 302 72 185 257 100 14 chrX 32759113 32759183 -144214957 + MIR SINE MIR 79 154 -108 2012 113 0 53 chrX 32759187 32759505 -144214635 + AluSq SINE Alu 11 311 -2 772 109 40 103 chrX 32759610 32759784 -144214356 - MLT1E2 LTR MaLR -446 180 18 2505 149 51 33 chrX 32759799 32760248 -144213892 - MSTB2 LTR MaLR 0 457 1 27 0 0 0 chrX 32760285 32760312 -144213828 + AT_rich Low_complexity Low_complexity 1 27 0 210 382 0 9 chrX 32761076 32761186 -144212954 + GA-rich Low_complexity Low_complexity 3 111 0 212 371 46 7 chrX 32761355 32761506 -144212634 - L2 LINE L2 -1637 1677 1521 258 255 160 9 chrX 32761742 32761848 -144212292 + MIR3 SINE MIR 81 202 -6 352 216 78 85 chrX 32762106 32762259 -144211881 - MIR SINE MIR -79 183 32 470 257 97 80 chrX 32763837 32764553 -144209587 + L1ME LINE L1 534 1213 -4867 2171 125 70 9 chrX 32764773 32765116 -144209024 + MER47A DNA MER2_type 1 364 -2 4100 95 39 47 chrX 32765192 32765630 -144208510 + L1MA3 LINE L1 5666 6106 -199 2027 130 3 16 chrX 32765630 32765799 -144208341 - AluSx SINE Alu -9 303 138 2086 78 0 19 chrX 32765799 32766067 -144208073 - AluY SINE Alu -9 302 40 2027 130 3 16 chrX 32766067 32766204 -144207936 - AluSx SINE Alu -174 138 1 4100 95 39 47 chrX 32766204 32766216 -144207924 + L1MA3 LINE L1 6106 6117 -188 1799 148 3 30 chrX 32766216 32766521 -144207619 - AluJb SINE Alu -15 297 1 4100 95 39 47 chrX 32766521 32766714 -144207426 + L1MA3 LINE L1 6117 6305 0 2023 128 7 10 chrX 32766854 32767160 -144206980 + AluSx SINE Alu 1 305 -7 2365 106 0 3 chrX 32767160 32767471 -144206669 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 32767485 32767532 -144206608 - MIR3 SINE MIR -16 192 144 2295 73 3 22 chrX 32767532 32767848 -144206292 + AluSg SINE Alu 1 310 0 346 289 23 81 chrX 32767848 32767973 -144206167 - MIR3 SINE MIR -64 144 30 27 49 0 0 chrX 32768038 32768079 -144206061 + AT_rich Low_complexity Low_complexity 1 41 0 519 17 0 0 chrX 32768211 32768271 -144205869 + (CA)n Simple_repeat Simple_repeat 2 61 0 2232 109 0 16 chrX 32768474 32768777 -144205363 + AluSg SINE Alu 1 298 -12 1646 133 126 0 chrX 32769371 32769634 -144204506 + AluSx SINE Alu 1 296 -16 2234 101 0 32 chrX 32769638 32769954 -144204186 + AluSx SINE Alu 1 306 -6 26 0 0 0 chrX 32769956 32769982 -144204158 + AT_rich Low_complexity Low_complexity 1 26 0 222 91 0 0 chrX 32770249 32770282 -144203858 + (TC)n Simple_repeat Simple_repeat 1 33 0 2357 89 3 16 chrX 32770331 32770645 -144203495 - AluY SINE Alu -1 310 1 2215 110 3 0 chrX 32770753 32771053 -144203087 - AluSg SINE Alu -9 301 1 2045 213 47 40 chrX 32772540 32773070 -144201070 + MLT1H LTR MaLR 1 534 -15 184 349 12 36 chrX 32773099 32773182 -144200958 - L2 LINE L2 -1 3271 3191 514 329 82 64 chrX 32773261 32774068 -144200072 - L2 LINE L2 -221 3051 2230 1345 204 42 13 chrX 32774624 32775080 -144199060 + L1MB3 LINE L1 5078 5554 -626 1315 197 59 4 chrX 32775080 32775334 -144198806 + AluJo SINE Alu 13 280 -32 2229 108 3 0 chrX 32775334 32775639 -144198501 - AluSx SINE Alu -6 306 1 3152 149 39 14 chrX 32775666 32776190 -144197950 + L1MB3 LINE L1 5595 6136 -47 1906 129 61 4 chrX 32776190 32776469 -144197671 + AluSx SINE Alu 1 295 -17 3152 149 39 14 chrX 32776469 32776516 -144197624 + L1MB3 LINE L1 6136 6180 -3 2392 189 39 82 chrX 32776528 32777247 -144196893 + L1ME3 LINE L1 5426 6113 -49 370 0 0 0 chrX 32777247 32777288 -144196852 + (TTTA)n Simple_repeat Simple_repeat 4 144 0 762 120 0 0 chrX 32777288 32777389 -144196751 - AluSg/x SINE Alu -1 327 187 1723 170 0 52 chrX 32777788 32778117 -144196023 - AluJb SINE Alu 0 312 1 2097 102 7 0 chrX 32778387 32778696 -144195444 + AluSx SINE Alu 9 312 0 1292 194 61 7 chrX 32779114 32779408 -144194732 + AluJo SINE Alu 1 310 -2 2666 30 0 0 chrX 32779408 32779703 -144194437 - AluY SINE Alu -16 295 1 22 0 0 0 chrX 32779703 32779725 -144194415 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 32780906 32780947 -144193193 + (TG)n Simple_repeat Simple_repeat 1 41 0 399 68 0 0 chrX 32780947 32781006 -144193134 + (GA)n Simple_repeat Simple_repeat 2 60 0 319 271 101 110 chrX 32781917 32782543 -144191597 + L1M2 LINE L1 815 1384 -5465 22 0 0 0 chrX 32785027 32785049 -144189091 + AT_rich Low_complexity Low_complexity 1 22 0 244 136 51 0 chrX 32785661 32785720 -144188420 + GA-rich Low_complexity Low_complexity 1 62 0 1504 141 144 4 chrX 32785772 32786028 -144188112 + AluSx SINE Alu 1 292 -10 1620 191 115 28 chrX 32786213 32786392 -144187748 + MLT1C LTR MaLR 6 168 -299 369 0 0 0 chrX 32786392 32786433 -144187707 + (CA)n Simple_repeat Simple_repeat 2 42 0 1620 191 115 28 chrX 32786433 32786678 -144187462 + MLT1C LTR MaLR 168 467 0 2237 109 3 0 chrX 32786779 32787072 -144187068 + AluSx SINE Alu 1 294 -18 185 235 106 82 chrX 32787113 32787198 -144186942 - L3 LINE CR1 0 1577 1491 2188 118 0 7 chrX 32787223 32787528 -144186612 - AluSx SINE Alu -9 303 1 2151 114 42 36 chrX 32787863 32788196 -144185944 - MER1B DNA MER1_type 0 337 3 1631 154 91 51 chrX 32788329 32788680 -144185460 - MLT1A1 LTR MaLR 0 365 1 2105 132 0 0 chrX 32789544 32789839 -144184301 + AluSx SINE Alu 2 296 -16 618 277 20 15 chrX 32790209 32790411 -144183729 + L2 LINE L2 3109 3311 -2 921 143 0 0 chrX 32790489 32790622 -144183518 + FLAM_C SINE Alu 1 133 0 800 203 40 0 chrX 32791604 32791773 -144182367 - MER45A DNA AcHobo 0 178 1 462 319 0 9 chrX 32791773 32791886 -144182254 - MER5B DNA MER1_type -62 116 5 5257 75 5 3 chrX 32792520 32793170 -144180970 + L1PA11 LINE L1 5524 6174 0 341 248 7 95 chrX 32793681 32793818 -144180322 + LTR16A1 LTR ERVL 1 125 -332 426 281 23 9 chrX 32793909 32794161 -144179979 + LTR16A1 LTR ERVL 166 457 0 2264 91 3 0 chrX 32794608 32794894 -144179246 + AluSp SINE Alu 1 287 -26 1412 268 75 27 chrX 32794920 32795398 -144178742 - LTR33 LTR ERVL -2 519 19 2699 153 19 16 chrX 32795445 32795870 -144178270 + MSTB LTR MaLR 1 426 0 2366 109 0 0 chrX 32796623 32796935 -144177205 + AluSx SINE Alu 1 312 0 4839 153 23 38 chrX 32797115 32797979 -144176161 + MER6 DNA MER2_type 2 852 -13 206 329 0 25 chrX 32798329 32798408 -144175732 - L2 LINE L2 0 3272 3196 1983 170 21 128 chrX 32798701 32799225 -144174915 + MLT1D LTR MaLR 1 468 -37 647 273 35 0 chrX 32799364 32799536 -144174604 + MLT1G LTR MaLR 1 178 -412 476 171 108 27 chrX 32800370 32800481 -144173659 - L1MC4 LINE L1 -143 7899 7780 1884 162 0 16 chrX 32801198 32801366 -144172774 - AluJb SINE Alu -8 304 142 2043 134 0 10 chrX 32801366 32801672 -144172468 - AluJb SINE Alu -9 303 1 1884 162 0 16 chrX 32801672 32801812 -144172328 - AluJb SINE Alu -170 142 1 22 0 0 0 chrX 32801891 32801913 -144172227 + AT_rich Low_complexity Low_complexity 1 22 0 1542 90 19 0 chrX 32802242 32802453 -144171687 - Tigger1 DNA MER2_type 0 2418 2204 796 191 0 21 chrX 32802454 32802595 -144171545 - Tigger1 DNA MER2_type -2280 138 1 1310 233 46 11 chrX 32802596 32802965 -144171175 - L1M4 LINE L1 -1808 4338 3957 537 271 59 49 chrX 32803461 32803664 -144170476 + MIR3 SINE MIR 4 208 0 2905 218 28 7 chrX 32804332 32804902 -144169238 + MLT1G LTR MaLR 1 582 -8 509 273 0 38 chrX 32805281 32805413 -144168727 + MIR SINE MIR 33 159 -103 430 238 133 20 chrX 32805867 32806018 -144168122 + MIR SINE MIR 20 187 -75 2161 104 7 3 chrX 32806318 32806605 -144167535 + AluSp SINE Alu 1 288 -25 357 24 0 0 chrX 32806605 32806647 -144167493 + (CA)n Simple_repeat Simple_repeat 2 43 0 778 253 108 8 chrX 32806648 32806889 -144167251 + L1ME3 LINE L1 5897 6161 -1 342 0 0 0 chrX 32807484 32807522 -144166618 + (TG)n Simple_repeat Simple_repeat 2 39 0 2097 132 0 0 chrX 32808207 32808503 -144165637 - AluJb SINE Alu -16 296 1 938 121 0 8 chrX 32808537 32808669 -144165471 - AluSq SINE Alu -56 257 127 2140 127 3 7 chrX 32808677 32808985 -144165155 - AluSx SINE Alu -5 307 1 230 349 66 0 chrX 32809032 32809138 -144165002 + L2 LINE L2 3201 3313 0 2597 40 0 0 chrX 32809859 32810155 -144163985 - AluY SINE Alu -15 296 1 25 0 0 0 chrX 32810670 32810695 -144163445 + AT_rich Low_complexity Low_complexity 1 25 0 2523 157 25 54 chrX 32811244 32811689 -144162451 + MSTB1 LTR MaLR 1 432 0 180 0 0 0 chrX 32812300 32812320 -144161820 + (A)n Simple_repeat Simple_repeat 1 20 0 2311 86 21 0 chrX 32812321 32812612 -144161528 + AluSx SINE Alu 1 297 -15 25 31 0 0 chrX 32812612 32812644 -144161496 + AT_rich Low_complexity Low_complexity 1 32 0 2300 162 30 10 chrX 32812654 32813049 -144161091 + MER65A LTR ERV1 42 444 -1 293 298 16 16 chrX 32813056 32813180 -144160960 + A-rich Low_complexity Low_complexity 2 125 0 494 268 24 8 chrX 32814004 32814131 -144160009 + MER94 DNA DNA 1 129 -5 180 111 0 0 chrX 32814178 32814205 -144159935 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1922 155 0 10 chrX 32814241 32814538 -144159602 + AluJb SINE Alu 1 294 -18 1410 181 88 78 chrX 32815231 32815600 -144158540 + MLT2D LTR ERVL 1 376 -38 607 69 20 10 chrX 32815600 32815702 -144158438 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 1410 181 88 78 chrX 32815702 32815740 -144158400 + MLT2D LTR ERVL 376 412 -2 1941 152 13 22 chrX 32817135 32817450 -144156690 + AluJo SINE Alu 1 312 0 2200 103 3 7 chrX 32817479 32817780 -144156360 + AluSx SINE Alu 1 300 -12 2147 134 13 0 chrX 32817904 32818210 -144155930 - AluSx SINE Alu 0 312 3 540 266 57 13 chrX 32818245 32818403 -144155737 + MIR SINE MIR 11 175 -87 1314 183 18 53 chrX 32818472 32818757 -144155383 - LTR16C LTR ERVL -6 485 211 215 333 0 0 chrX 32818765 32818834 -144155306 - L2 LINE L2 -60 3253 3185 207 319 0 42 chrX 32819008 32819080 -144155060 + L2 LINE L2 2997 3065 -248 200 257 54 0 chrX 32819207 32819281 -144154859 + L2 LINE L2 3193 3270 -2 2030 116 3 10 chrX 32819656 32819949 -144154191 - AluJb SINE Alu -21 291 1 1392 194 45 36 chrX 32820259 32820616 -144153524 - Tigger7 DNA MER2_type 0 2491 1 3326 130 56 30 chrX 32820618 32820979 -144153161 + Tigger6a DNA MER2_type 420 803 -794 2167 95 0 0 chrX 32820979 32821253 -144152887 - AluSx SINE Alu -15 297 24 3326 130 56 30 chrX 32821253 32821482 -144152658 + Tigger6a DNA MER2_type 803 1025 -58 201 108 0 0 chrX 32821785 32821822 -144152318 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1385 158 130 0 chrX 32821825 32822071 -144152069 - AluJo SINE Alu -31 281 4 399 160 40 13 chrX 32822303 32822378 -144151762 + MER92B LTR ERV1 512 588 -48 24 0 0 0 chrX 32823288 32823312 -144150828 + AT_rich Low_complexity Low_complexity 1 24 0 2012 110 71 0 chrX 32823319 32823601 -144150539 + AluSp SINE Alu 1 302 -11 314 89 0 0 chrX 32823601 32823646 -144150494 - L1MB2 LINE L1 -9 6162 6118 881 196 5 22 chrX 32823726 32823910 -144150230 - L1MB2 LINE L1 -38 6133 5953 390 235 76 68 chrX 32823910 32823969 -144150171 + MIR SINE MIR 130 187 -75 1962 165 51 11 chrX 32823969 32824320 -144149820 + MLT1A1 LTR MaLR 1 365 0 390 235 76 68 chrX 32824320 32824392 -144149748 + MIR SINE MIR 187 262 0 402 249 53 35 chrX 32824732 32824901 -144149239 + Charlie8 DNA MER1_type 51 222 -2195 2301 223 15 47 chrX 32825133 32825162 -144148978 - LTR40a LTR ERVL -2 517 489 3020 103 5 0 chrX 32825162 32825571 -144148569 - L1PA12 LINE L1 0 6168 5758 2301 223 15 47 chrX 32825571 32825869 -144148271 - LTR40a LTR ERVL -30 489 211 1606 106 13 46 chrX 32825869 32826106 -144148034 - MER30 DNA MER1_type 0 230 2 2301 223 15 47 chrX 32826106 32826311 -144147829 - LTR40a LTR ERVL -308 211 1 2508 200 76 108 chrX 32826411 32826667 -144147473 - MER21B LTR ERV1 -63 800 537 2101 103 21 7 chrX 32826667 32826949 -144147191 + AluSx SINE Alu 1 286 -26 2508 200 76 108 chrX 32826949 32827498 -144146642 - MER21B LTR ERV1 -326 537 19 334 226 0 0 chrX 32827522 32827584 -144146556 - MER21B LTR ERV1 -776 87 26 1703 167 42 0 chrX 32827584 32827872 -144146268 - AluSx SINE Alu -12 300 1 570 313 63 56 chrX 32827953 32828622 -144145518 - L2 LINE L2 0 3272 2376 828 54 0 1 chrX 32830025 32830142 -144143998 - L1P4 LINE L1 -483 5683 5568 2099 103 7 14 chrX 32830585 32830877 -144143263 - AluSx SINE Alu -22 290 1 801 151 0 0 chrX 32831255 32831374 -144142766 - FLAM_C SINE Alu -24 119 1 489 204 49 56 chrX 32832147 32832289 -144141851 + MIR3 SINE MIR 11 151 -57 231 36 0 0 chrX 32832455 32832483 -144141657 + (TC)n Simple_repeat Simple_repeat 1 28 0 2205 104 20 0 chrX 32832589 32832888 -144141252 - AluSc SINE Alu -4 305 1 3588 118 21 58 chrX 32832967 32833376 -144140764 + L1MA7 LINE L1 5693 6073 -218 2103 104 7 11 chrX 32833376 32833663 -144140477 + AluSg SINE Alu 1 286 -24 3588 118 21 58 chrX 32833663 32833869 -144140271 + L1MA7 LINE L1 6073 6285 -6 1243 244 124 29 chrX 32834152 32834602 -144139538 + LTR33 LTR ERVL 29 521 0 500 271 195 47 chrX 32834602 32835046 -144139094 - LTR33A LTR ERVL -11 512 3 329 279 22 51 chrX 32835047 32835204 -144138936 + MIR SINE MIR 62 214 -48 567 228 35 0 chrX 32835928 32836042 -144138098 + MER5B DNA MER1_type 1 118 -60 6038 103 12 5 chrX 32836047 32836899 -144137241 - L1PA15 LINE L1 -6 6159 5302 320 164 0 33 chrX 32836899 32836960 -144137180 + MER5B DNA MER1_type 115 173 -5 269 302 54 23 chrX 32837296 32837425 -144136715 - MIR3 SINE MIR -73 135 3 2210 101 30 0 chrX 32837839 32838136 -144136004 - AluSx SINE Alu -6 306 1 660 130 189 78 chrX 32838406 32838660 -144135480 - MER4C LTR ERV1 -18 447 165 363 176 15 114 chrX 32838669 32838800 -144135340 - MER4A LTR ERV1 -322 342 225 340 189 126 53 chrX 32838930 32839025 -144135115 - MER5A DNA MER1_type -1 188 87 2076 90 29 26 chrX 32839045 32839356 -144134784 - AluSx SINE Alu 0 312 1 625 74 16 41 chrX 32839365 32839486 -144134654 + (TTTC)n Simple_repeat Simple_repeat 4 121 0 2264 88 13 3 chrX 32839495 32839802 -144134338 - AluSx SINE Alu -2 310 1 1617 204 52 36 chrX 32839939 32840412 -144133728 - MER74B LTR ERVL 0 622 55 2557 20 7 20 chrX 32840424 32840725 -144133415 + AluY SINE Alu 1 297 -14 1542 149 84 8 chrX 32841042 32841339 -144132801 - AluJo SINE Alu 0 317 1 23 33 0 0 chrX 32842312 32842342 -144131798 + AT_rich Low_complexity Low_complexity 1 30 0 192 314 118 0 chrX 32842618 32842720 -144131420 + L3 LINE CR1 1301 1414 -163 515 305 138 5 chrX 32842804 32843007 -144131133 - MIR SINE MIR -13 249 20 386 107 18 0 chrX 32843532 32843588 -144130552 + Tigger2 DNA MER2_type 1 57 -2661 982 200 0 0 chrX 32845117 32845277 -144128863 - MER8 DNA MER2_type -78 161 2 180 0 0 0 chrX 32845589 32845609 -144128531 + (A)n Simple_repeat Simple_repeat 1 20 0 2152 131 3 0 chrX 32845925 32846223 -144127917 + AluSx SINE Alu 1 299 -13 1610 159 55 17 chrX 32846732 32847022 -144127118 - AluJo SINE Alu -11 301 1 651 165 0 0 chrX 32847279 32847394 -144126746 - L1MA7 LINE L1 -5 6286 6172 1377 278 97 49 chrX 32847845 32848103 -144126037 - L1MC4a LINE L1 -743 5403 5159 2298 97 0 3 chrX 32848103 32848402 -144125738 + AluSp SINE Alu 2 299 -14 1377 278 97 49 chrX 32848402 32848818 -144125322 - L1MC4a LINE L1 -987 5159 4764 2408 93 0 0 chrX 32848818 32849118 -144125022 - AluSg SINE Alu -10 300 1 1377 278 97 49 chrX 32849118 32849550 -144124590 - L1MC4a LINE L1 -1382 4764 4725 2684 33 0 0 chrX 32849550 32849852 -144124288 - AluY SINE Alu -9 302 1 1377 278 97 49 chrX 32849852 32850232 -144123908 - L1MC4a LINE L1 -1421 4725 4365 409 97 0 16 chrX 32850235 32850297 -144123843 + MADE1 DNA Mariner 2 62 -18 30 0 0 0 chrX 32850404 32850434 -144123706 + AT_rich Low_complexity Low_complexity 1 30 0 279 281 65 55 chrX 32850434 32850633 -144123507 - L1ME3A LINE L1 -2 6168 5968 466 266 65 13 chrX 32850703 32850857 -144123283 - L1ME3A LINE L1 -230 5940 5779 1575 171 3 50 chrX 32851028 32851350 -144122790 - AluJo SINE Alu -5 307 1 1631 183 4 7 chrX 32851504 32851778 -144122362 - AluJo SINE Alu -12 300 28 877 142 0 8 chrX 32852176 32852310 -144121830 - FLAM_C SINE Alu -6 137 5 2547 199 14 29 chrX 32852431 32852993 -144121147 - L1ME1 LINE L1 -5 6972 6419 2465 83 0 13 chrX 32853006 32853320 -144120820 - AluSx SINE Alu -2 310 1 14370 124 29 19 chrX 32853320 32855357 -144118783 + Tigger1 DNA MER2_type 178 2240 -178 2620 53 0 0 chrX 32855357 32855659 -144118481 - AluY SINE Alu -9 302 1 14370 124 29 19 chrX 32855659 32855839 -144118301 + Tigger1 DNA MER2_type 2240 2417 -1 1563 182 47 84 chrX 32855839 32856351 -144117789 - L1ME1 LINE L1 -877 6080 5588 1503 87 13 48 chrX 32856371 32856496 -144117644 - L1MA1 LINE L1 -402 5900 5785 2453 84 3 3 chrX 32856496 32856807 -144117333 - AluY SINE Alu 0 311 1 1503 87 13 48 chrX 32856807 32856912 -144117228 - L1MA1 LINE L1 -517 5785 5678 388 107 0 0 chrX 32856912 32856962 -144117178 + L1MA3 LINE L1 6250 6305 0 21 0 0 0 chrX 32856962 32856983 -144117157 + AT_rich Low_complexity Low_complexity 1 21 0 1339 173 28 0 chrX 32857020 32857274 -144116866 + L1 LINE L1 4834 5094 -1052 * 2920 238 52 59 chrX 32857268 32859919 -144114221 - L1ME1 LINE L1 -3179 3778 1029 306 284 20 24 chrX 32860238 32860406 -144113734 - L1ME1 LINE L1 -6306 549 91 2220 92 0 0 chrX 32860614 32860918 -144113222 - AluSx SINE Alu 0 304 1 1776 164 31 0 chrX 32862392 32862685 -144111455 - AluJb SINE Alu -8 304 3 529 228 88 47 chrX 32862797 32862990 -144111150 + MIR SINE MIR 1 201 -61 201 376 53 15 chrX 32863132 32863265 -144110875 - L2 LINE L2 -17 3255 3118 2401 71 3 0 chrX 32863274 32863571 -144110569 - AluSx SINE Alu -14 298 1 579 307 39 0 chrX 32863684 32863837 -144110303 + MIR SINE MIR 20 178 -84 209 271 34 0 chrX 32864479 32864538 -144109602 - L2 LINE L2 -7 3265 3205 1125 53 0 0 chrX 32864555 32864686 -144109454 + AluSg SINE Alu 1 131 -179 1660 161 38 7 chrX 32864806 32865097 -144109043 + MSTB2 LTR MaLR 1 300 -157 1339 31 0 0 chrX 32865127 32865288 -144108852 + L1PA5 LINE L1 5898 6058 -96 861 164 6 68 chrX 32865288 32865465 -144108675 + MSTB2 LTR MaLR 290 455 -2 2415 202 67 32 chrX 32866920 32867485 -144106655 + MER77 LTR ERV1 41 598 -7 1299 236 29 66 chrX 32867576 32867987 -144106153 - LTR16A LTR ERVL 0 450 55 965 155 10 125 chrX 32868687 32868780 -144105360 + MER33 DNA MER1_type 61 163 -2422 2188 118 0 3 chrX 32868780 32869086 -144105054 - AluSg1 SINE Alu -4 305 1 965 155 10 125 chrX 32869086 32869188 -144104952 + MER33 DNA MER1_type 163 213 -2372 2383 103 0 0 chrX 32869188 32869498 -144104642 - AluSx SINE Alu -2 310 1 965 155 10 125 chrX 32869498 32869598 -144104542 + MER33 DNA MER1_type 213 323 -1 605 244 15 0 chrX 32869643 32869778 -144104362 + LTR16C LTR ERVL 332 468 -23 347 123 0 0 chrX 32870536 32870600 -144103540 - Alu SINE Alu -252 50 1 246 136 0 0 chrX 32870915 32870959 -144103181 + (TTTTC)n Simple_repeat Simple_repeat 4 47 0 567 0 0 0 chrX 32871278 32871341 -144102799 + (TA)n Simple_repeat Simple_repeat 1 63 0 2291 117 3 0 chrX 32871344 32871653 -144102487 - AluSx SINE Alu -2 310 1 922 149 8 0 chrX 32871674 32871808 -144102332 - FRAM SINE Alu -32 144 10 559 227 50 0 chrX 32871924 32872065 -144102075 - MER69 DNA AcHobo -1 2525 2378 455 265 0 0 chrX 32872043 32872145 -144101995 - MER69 DNA AcHobo -979 247 146 * 6841 210 34 60 chrX 32872146 32872293 -144101847 - L1M4 LINE L1 -1013 5133 4984 1964 163 0 3 chrX 32872293 32872593 -144101547 + AluJb SINE Alu 1 299 -13 6841 210 34 60 chrX 32872593 32873874 -144100266 - L1M4 LINE L1 -1162 4984 3773 2371 89 0 16 chrX 32873874 32874190 -144099950 - AluSx SINE Alu -1 311 1 6841 210 34 60 chrX 32874190 32874827 -144099313 - L1M4 LINE L1 -2373 3773 3121 1834 182 67 45 chrX 32874853 32875271 -144098869 + MER31B LTR ERV1 1 427 -39 347 43 0 0 chrX 32875273 32875319 -144098821 + MADE1 DNA Mariner 1 46 -34 1283 197 145 8 chrX 32875342 32875693 -144098447 - L1M4 LINE L1 -3144 3002 2604 580 243 129 35 chrX 32876459 32876661 -144097479 + L2 LINE L2 2517 2737 -577 12099 206 8 19 chrX 32876661 32879613 -144094527 + L1MB3 LINE L1 2418 5332 -823 1948 156 0 7 chrX 32879613 32879915 -144094225 + AluSx SINE Alu 1 300 -12 963 143 6 56 chrX 32879923 32880084 -144094056 + AluSg/x SINE Alu 145 297 -15 5394 120 5 0 chrX 32880085 32880918 -144093222 + L1PA15 LINE L1 5322 6158 -7 1316 146 54 0 chrX 32881549 32881809 -144092331 + L1MB3 LINE L1 5690 5963 -220 1741 188 3 13 chrX 32882524 32882827 -144091313 - AluJo SINE Alu -12 300 1 275 341 11 0 chrX 32882982 32883073 -144091067 + MIR SINE MIR 21 112 -150 935 237 93 35 chrX 32884122 32884646 -144089494 - MLT1G LTR MaLR 0 555 1 838 238 31 35 chrX 32885103 32885330 -144088810 - MIR SINE MIR -3 259 34 386 303 35 14 chrX 32886398 32886540 -144087600 - L2 LINE L2 -4 3309 3165 216 339 108 38 chrX 32886690 32887006 -144087134 - L2 LINE L2 -340 2974 2637 582 293 17 11 chrX 32887007 32887188 -144086952 + MIR SINE MIR 81 262 0 27 0 0 0 chrX 32888197 32888224 -144085916 + AT_rich Low_complexity Low_complexity 1 27 0 274 197 0 16 chrX 32888391 32888452 -144085688 - L1ME3A LINE L1 -96 6074 6015 2230 97 0 0 chrX 32888467 32888766 -144085374 - AluSg1 SINE Alu -10 299 1 7525 168 5 0 chrX 32888778 32890936 -144083204 - L1PA13 LINE L1 -4 6159 3988 283 154 0 31 chrX 32890941 32891006 -144083134 - L1PA13 LINE L1 -2712 3434 3372 * 4751 176 20 7 chrX 32890996 32891898 -144082242 - MSTB-int LTR MaLR -737 914 1 1876 177 77 17 chrX 32891898 32892300 -144081840 - MSTB LTR MaLR 0 426 1 5060 130 8 0 chrX 32892506 32893947 -144080193 + L1PA13 LINE L1 4399 5847 -316 943 194 44 0 chrX 32894784 32894964 -144079176 + L1PB4 LINE L1 5961 6148 -8 511 204 0 26 chrX 32895087 32895200 -144078940 - L2 LINE L2 -1 3312 3203 6394 182 47 95 chrX 32895210 32897091 -144077049 + L1MC3 LINE L1 5988 7778 -7 485 285 96 34 chrX 32897126 32897417 -144076723 - L2 LINE L2 -177 3136 2828 227 302 123 22 chrX 32897537 32897716 -144076424 - MIR SINE MIR -29 233 37 249 33 0 0 chrX 32898053 32898083 -144076057 + (TG)n Simple_repeat Simple_repeat 1 30 0 205 182 0 0 chrX 32899246 32899279 -144074861 + (CA)n Simple_repeat Simple_repeat 2 34 0 298 267 289 0 chrX 32900100 32900235 -144073905 + MIR3 SINE MIR 34 207 -1 196 222 14 83 chrX 32900561 32900633 -144073507 - L2 LINE L2 -3 3269 3203 630 320 97 45 chrX 32901056 32901519 -144072621 - L2 LINE L2 -23 3290 2804 189 302 0 63 chrX 32901644 32901707 -144072433 - MIR SINE MIR -172 90 32 2835 118 31 2 chrX 32901845 32902261 -144071879 - MSTA LTR MaLR 0 428 1 2377 178 36 26 chrX 32902746 32903098 -144071042 + MLT1D LTR MaLR 1 361 -144 5646 78 78 0 chrX 32903098 32903864 -144070276 - LTR12 LTR ERV1 0 826 1 2377 178 36 26 chrX 32903864 32904011 -144070129 + MLT1D LTR MaLR 361 505 0 1724 194 7 3 chrX 32904895 32905188 -144068952 + AluJb SINE Alu 1 294 -18 2377 61 0 16 chrX 32905195 32905532 -144068608 + AluY SINE Alu 1 311 0 262 207 35 0 chrX 32905576 32905634 -144068506 + AluJ/monomer SINE Alu 234 293 -9 197 139 23 0 chrX 32906732 32906775 -144067365 + (CA)n Simple_repeat Simple_repeat 1 44 0 * 393 139 23 12 chrX 32906774 32906860 -144067280 + (TA)n Simple_repeat Simple_repeat 1 87 0 279 303 152 0 chrX 32906860 32906992 -144067148 + Charlie8 DNA MER1_type 58 209 -2208 1103 265 12 19 chrX 32907472 32907893 -144066247 + L2 LINE L2 2738 3156 -157 1407 145 11 25 chrX 32907893 32908175 -144065965 - Tigger6 DNA MER2_type -1 1596 1319 4218 145 38 43 chrX 32908180 32908558 -144065582 + L1MB4 LINE L1 5336 5715 -465 2068 125 13 16 chrX 32908558 32908863 -144065277 - AluSx SINE Alu -8 304 1 4218 145 38 43 chrX 32908863 32909334 -144064806 + L1MB4 LINE L1 5715 6180 0 2808 149 24 15 chrX 32909352 32909895 -144064245 + L1MA4A LINE L1 5575 6122 -181 390 163 12 0 chrX 32909898 32909978 -144064162 + L1MA4A LINE L1 6188 6268 -35 1906 179 5 18 chrX 32909978 32910370 -144063770 - Tigger6 DNA MER2_type -261 1336 950 241 263 0 0 chrX 32910565 32910641 -144063499 - Tigger3(Golem) DNA MER2_type -1515 1514 1439 1781 174 31 0 chrX 32910741 32911058 -144063082 - Tigger6 DNA MER2_type -756 327 1 622 234 14 21 chrX 32911060 32911205 -144062935 + L2 LINE L2 3160 3303 -10 217 250 0 0 chrX 32911209 32911257 -144062883 + GA-rich Low_complexity Low_complexity 3 50 0 201 325 100 0 chrX 32911259 32911339 -144062801 - MIR3 SINE MIR -40 168 81 786 125 6 30 chrX 32912190 32912358 -144061782 + (TTTC)n Simple_repeat Simple_repeat 2 165 0 390 95 12 107 chrX 32913270 32913354 -144060786 + MER91C DNA MER1_type 1 76 -64 347 283 104 9 chrX 32913461 32913567 -144060573 + L2 LINE L2 3156 3271 -1 1447 191 58 25 chrX 32914389 32914751 -144059389 + MLT1A2 LTR MaLR 1 374 0 496 269 196 12 chrX 32914775 32914973 -144059167 + MIR SINE MIR 13 248 -14 370 340 166 34 chrX 32916919 32917611 -144056529 + L2 LINE L2 2286 3064 -208 1808 227 48 10 chrX 32918127 32918607 -144055533 + L1MEc LINE L1 37 534 -5862 581 252 6 16 chrX 32918642 32918835 -144055305 + L1MA10 LINE L1 5979 6331 -3 1584 178 125 0 chrX 32919057 32919378 -144054762 - MLT1A1 LTR MaLR 0 365 5 1637 137 35 3 chrX 32920444 32920894 -144053246 + L1M2 LINE L1 5007 5468 -743 562 186 24 60 chrX 32921167 32921334 -144052806 + MLT1H LTR MaLR 1 161 -388 332 298 119 35 chrX 32921489 32921808 -144052332 + MLT1J1 LTR MaLR 78 423 -23 742 196 4 122 chrX 32921823 32922053 -144052087 + MER63A DNA MER1_type 8 210 0 293 234 16 16 chrX 32922264 32922328 -144051812 + L2 LINE L2 3205 3268 -4 238 123 0 46 chrX 32922466 32922531 -144051609 - L1MCa LINE L1 -4359 2067 2006 234 139 0 0 chrX 32922703 32922739 -144051401 + MIR SINE MIR 114 149 -59 2062 29 50 0 chrX 32922956 32923197 -144050943 - AluY SINE Alu -9 302 50 2257 108 0 0 chrX 32923335 32923632 -144050508 + AluSx SINE Alu 1 297 -15 2125 118 0 13 chrX 32924112 32924418 -144049722 + AluSx SINE Alu 1 302 -10 675 168 0 133 chrX 32924564 32924760 -144049380 - L1MB8 LINE L1 -78 6100 5931 * 3015 137 29 129 chrX 32924748 32925973 -144048167 - L1MA8 LINE L1 -210 6081 4982 2318 108 31 0 chrX 32925988 32926340 -144047800 - L1PA16 LINE L1 -2 6164 5802 1176 113 10 10 chrX 32926339 32926533 -144047607 + L1PA16 LINE L1 5620 5813 -353 * 1999 145 3 6 chrX 32926529 32926880 -144047260 - L1MA8 LINE L1 -1148 4998 4649 * 3799 121 10 80 chrX 32926879 32927692 -144046448 + L1MA8 LINE L1 3881 4636 -1510 1647 179 28 3 chrX 32927717 32928002 -144046138 - AluSx SINE Alu -20 292 1 2616 246 97 96 chrX 32929261 32929599 -144044541 + HAL1 LINE L1 99 435 -2072 2396 33 40 23 chrX 32929599 32929901 -144044239 - AluY SINE Alu -4 307 1 2616 246 97 96 chrX 32929901 32931047 -144043093 + HAL1 LINE L1 435 1589 -918 2278 101 3 7 chrX 32931047 32931354 -144042786 + AluSx SINE Alu 1 306 -6 2616 246 97 96 chrX 32931354 32931863 -144042277 + HAL1 LINE L1 1589 2096 -411 601 24 24 0 chrX 32931895 32931978 -144042162 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 308 282 0 0 chrX 32931983 32932086 -144042054 + L1ME1 LINE L1 4581 4683 -1463 1022 247 46 27 chrX 32933963 32934335 -144039805 + L1ME1 LINE L1 4677 5055 -1091 2539 155 32 4 chrX 32934387 32934891 -144039249 + L1MA7 LINE L1 5773 6290 -1 1561 138 109 37 chrX 32934966 32935315 -144038825 + THE1C LTR MaLR 1 374 -1 4003 109 15 63 chrX 32935319 32936037 -144038103 + THE1C-int LTR MaLR 4 687 -893 4279 62 7 0 chrX 32936065 32936629 -144037511 - HERVL LTR ERVL -2935 2719 2152 385 143 0 14 chrX 32936629 32936699 -144037441 + MSTA LTR MaLR 360 428 0 2514 74 0 0 chrX 32936724 32937034 -144037106 + AluY SINE Alu 2 311 0 2289 194 60 30 chrX 32937035 32937696 -144036444 + L1ME1 LINE L1 5196 5880 -286 2448 93 3 0 chrX 32937696 32938006 -144036134 + AluSp SINE Alu 1 311 -2 2289 194 60 30 chrX 32938006 32938066 -144036074 + L1ME1 LINE L1 5880 5937 -229 724 103 0 9 chrX 32938070 32938177 -144035963 - HERVL LTR ERVL -3391 2263 2158 677 212 22 22 chrX 32938245 32938424 -144035716 + L1ME1 LINE L1 5983 6161 -5 2207 258 97 30 chrX 32938430 32939266 -144034874 + L1ME LINE L1 3836 4829 -1317 1661 137 103 4 chrX 32939266 32939528 -144034612 + AluJo SINE Alu 1 288 -24 2207 258 97 30 chrX 32939528 32940076 -144034064 + L1ME LINE L1 4829 5339 -807 410 276 0 58 chrX 32940076 32940232 -144033908 + L1ME3 LINE L1 5928 6074 -88 358 258 95 0 chrX 32940305 32940523 -144033617 + L1ME LINE L1 5319 5558 -604 405 0 0 0 chrX 32940533 32940578 -144033562 + (TG)n Simple_repeat Simple_repeat 2 46 0 267 317 84 28 chrX 32940578 32940827 -144033313 + L1ME LINE L1 5615 5877 -287 1786 210 52 38 chrX 32941052 32941526 -144032614 + L1MC4a LINE L1 7267 7751 -57 3090 159 46 11 chrX 32941526 32942136 -144032004 - L1MB7 LINE L1 -17 6167 5537 1786 210 52 38 chrX 32942136 32942195 -144031945 + L1MC4a LINE L1 7751 7808 0 1673 249 89 8 chrX 32942361 32942875 -144031265 - MER21B LTR ERV1 -57 806 251 1288 211 26 73 chrX 32942876 32943259 -144030881 + MLT1A1 LTR MaLR 1 365 0 3835 202 101 143 chrX 32943259 32943787 -144030353 + MLT1A1-int LTR MaLR 1 550 -1185 1980 144 0 7 chrX 32943787 32944092 -144030048 + AluJb SINE Alu 1 303 -9 3835 202 101 143 chrX 32944092 32944260 -144029880 + MLT1A1-int LTR MaLR 550 724 -1011 1275 136 11 0 chrX 32944260 32944469 -144029671 + AluSg/x SINE Alu 96 306 0 3835 202 101 143 chrX 32944469 32945393 -144028747 + MLT1A1-int LTR MaLR 724 1730 -5 1270 219 27 59 chrX 32945400 32945775 -144028365 + MLT1A1 LTR MaLR 3 365 0 784 169 13 133 chrX 32945794 32946019 -144028121 - MER21B LTR ERV1 -646 217 20 310 295 0 0 chrX 32946039 32946117 -144028023 - MER21B LTR ERV1 -773 90 13 705 166 0 83 chrX 32946301 32946446 -144027694 + FLAM_C SINE Alu 1 133 0 318 106 0 0 chrX 32947990 32948008 -144026132 + (TGGA)n Simple_repeat Simple_repeat 1 65 0 318 106 0 0 chrX 32948008 32948055 -144026085 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 296 24 24 0 chrX 32948297 32948338 -144025802 + (TC)n Simple_repeat Simple_repeat 2 43 0 426 20 0 0 chrX 32948339 32948390 -144025750 + (TG)n Simple_repeat Simple_repeat 2 52 0 338 298 8 57 chrX 32948707 32948831 -144025309 - L2 LINE L2 0 3313 3196 602 288 123 48 chrX 32949264 32949639 -144024501 - L2 LINE L2 -9 3304 2902 927 123 19 80 chrX 32951727 32951939 -144022201 + L1MA10 LINE L1 6129 6327 -7 267 357 70 35 chrX 32953423 32953566 -144020574 + L2 LINE L2 3125 3272 0 414 0 0 0 chrX 32954224 32954270 -144019870 + (CA)n Simple_repeat Simple_repeat 2 47 0 351 0 0 0 chrX 32955411 32955450 -144018690 + (TG)n Simple_repeat Simple_repeat 1 39 0 1278 85 0 40 chrX 32956311 32956386 -144017754 + L1PB1 LINE L1 5960 6036 -115 2427 76 3 0 chrX 32956386 32956687 -144017453 + AluY SINE Alu 1 302 -9 1278 85 0 40 chrX 32956687 32956810 -144017330 + L1PB1 LINE L1 6036 6150 -1 210 71 0 0 chrX 32956841 32956869 -144017271 + (A)n Simple_repeat Simple_repeat 1 28 0 293 280 28 37 chrX 32957641 32957748 -144016392 + MIR SINE MIR 80 185 -77 1217 115 46 9 chrX 32957776 32957993 -144016147 + L1MA9 LINE L1 6086 6310 -2 655 225 197 13 chrX 32958444 32959206 -144014934 - L1ME1 LINE L1 0 6166 5288 524 302 97 67 chrX 32961760 32962251 -144011889 + L2 LINE L2 2782 3306 -7 30 27 0 0 chrX 32963069 32963106 -144011034 + AT_rich Low_complexity Low_complexity 1 37 0 529 119 12 0 chrX 32963161 32963245 -144010895 - HY3 scRNA scRNA -6 95 11 700 266 58 19 chrX 32964485 32964692 -144009448 + MIR SINE MIR 33 247 -15 191 292 219 31 chrX 32964827 32965019 -144009121 - MIR SINE MIR -16 246 19 2225 104 27 0 chrX 32965651 32965771 -144008369 + AluSg SINE Alu 1 116 -194 184 30 61 0 chrX 32965771 32965804 -144008336 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2225 104 27 0 chrX 32965804 32965981 -144008159 + AluSg SINE Alu 116 306 -4 275 270 30 0 chrX 32966709 32966809 -144007331 - L2 LINE L2 -136 3177 3075 338 290 138 48 chrX 32967444 32967675 -144006465 + MIR SINE MIR 10 261 -1 997 204 51 0 chrX 32967720 32967955 -144006185 - MER46C DNA MER2_type -66 272 26 21 36 0 0 chrX 32970133 32970161 -144003979 + AT_rich Low_complexity Low_complexity 1 28 0 222 261 17 16 chrX 32974182 32974301 -143999839 + MIR SINE MIR 20 228 -34 299 336 26 0 chrX 32975495 32975608 -143998532 + MIR SINE MIR 34 149 -113 1705 162 37 4 chrX 32975743 32975862 -143998278 + AluJo SINE Alu 1 115 -197 306 0 0 0 chrX 32975862 32975896 -143998244 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1705 162 37 4 chrX 32975896 32976047 -143998093 + AluJo SINE Alu 115 280 -32 230 0 87 22 chrX 32976048 32976094 -143998046 + A-rich Low_complexity Low_complexity 2 50 0 207 278 0 42 chrX 32976557 32976629 -143997511 + G-rich Low_complexity Low_complexity 4 72 0 207 175 0 0 chrX 32978579 32978619 -143995521 + (TGG)n Simple_repeat Simple_repeat 1 40 0 489 233 9 0 chrX 32979658 32979774 -143994366 + L1MD2 LINE L1 6227 6343 -16 1178 190 289 33 chrX 32980090 32980499 -143993641 - HsTC2c DNA Tc2 0 729 226 2064 276 151 42 chrX 32980558 32981985 -143992155 - L2 LINE L2 0 3313 1716 283 339 191 6 chrX 32982008 32982176 -143991964 - L2 LINE L2 -1702 1612 1414 609 257 24 44 chrX 32982941 32983147 -143990993 + MIR SINE MIR 3 204 -58 25 65 0 0 chrX 32983316 32983362 -143990778 + AT_rich Low_complexity Low_complexity 1 46 0 227 271 29 29 chrX 32983594 32983664 -143990476 - MIR SINE MIR -66 142 73 2158 65 0 4 chrX 32983764 32984041 -143990099 + L1PA6 LINE L1 5875 6150 -4 5399 80 8 0 chrX 32984041 32984805 -143989335 + L1PA13 LINE L1 5394 6163 0 527 339 83 26 chrX 32984811 32985190 -143988950 + L2 LINE L2 2634 3046 -267 2491 54 0 16 chrX 32985481 32985794 -143988346 - AluY SINE Alu -3 308 1 350 0 44 0 chrX 32986621 32986666 -143987474 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 425 292 100 0 chrX 32988320 32988440 -143985700 - L2 LINE L2 0 3272 3141 351 0 0 0 chrX 32988562 32988601 -143985539 + (TG)n Simple_repeat Simple_repeat 2 40 0 207 178 67 22 chrX 32989186 32989231 -143984909 + L3 LINE CR1 1530 1576 -1 9436 197 60 10 chrX 32990445 32991378 -143982762 + L1M4 LINE L1 2697 3581 -2603 2014 162 89 13 chrX 32991378 32991773 -143982367 - MSTA LTR MaLR -3 425 1 9436 197 60 10 chrX 32991773 32993621 -143980519 + L1M4 LINE L1 3581 5624 -560 3675 96 277 0 chrX 32993621 32994268 -143979872 - LTR12 LTR ERV1 0 826 1 9436 197 60 10 chrX 32994268 32994284 -143979856 + L1M4 LINE L1 5624 5638 -546 599 296 103 0 chrX 32994520 32994723 -143979417 - MIR SINE MIR -37 225 2 3336 158 24 17 chrX 32994885 32995548 -143978592 - L1MA9 LINE L1 0 6312 5645 375 211 40 0 chrX 32995548 32995624 -143978516 + Tigger5 DNA MER2_type 1 79 -2244 4209 137 16 7 chrX 32995707 32996768 -143977372 - L1M2 LINE L1 -668 5644 4578 578 275 3 35 chrX 32996760 32997047 -143977093 - L1M3e LINE L1 -6263 767 490 * 1030 195 50 8 chrX 32997054 32997315 -143976825 - L1M2 LINE L1 -3210 2936 2665 4075 240 19 6 chrX 32997317 32998507 -143975633 + L1M4 LINE L1 4099 5304 -842 4042 263 68 35 chrX 32998509 32999929 -143974211 + L1PA10 LINE L1 128 1595 -5192 * 15041 187 18 5 chrX 32999923 33003794 -143970346 + L1PA10 LINE L1 2534 6734 -85 3667 87 19 4 chrX 33003794 33004292 -143969848 + L1PA10 LINE L1 6292 6817 -2 15041 187 18 5 chrX 33004292 33004378 -143969762 + L1PA10 LINE L1 6734 6817 -2 214 318 75 47 chrX 33004495 33004602 -143969538 + MIR SINE MIR 30 139 -69 4786 20 2 0 chrX 33004781 33005335 -143968805 + L1PA2 LINE L1 5601 6155 0 2325 96 7 0 chrX 33005419 33005720 -143968420 - AluY SINE Alu -8 303 1 186 156 0 0 chrX 33005829 33005874 -143968266 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 236 216 20 0 chrX 33005874 33005925 -143968215 + GA-rich Low_complexity Low_complexity 1 52 0 698 197 73 132 chrX 33005940 33006311 -143967829 - MSTB1 LTR MaLR -83 349 1 285 29 0 0 chrX 33007002 33007036 -143967104 + (TG)n Simple_repeat Simple_repeat 1 34 0 191 88 29 0 chrX 33007087 33007121 -143967019 + (TTA)n Simple_repeat Simple_repeat 1 35 0 422 247 0 0 chrX 33008640 33008725 -143965415 + MER21B LTR ERV1 12 96 -767 2696 224 131 11 chrX 33008732 33009436 -143964704 + MER21B LTR ERV1 19 806 -57 205 189 0 0 chrX 33009523 33009560 -143964580 + (TG)n Simple_repeat Simple_repeat 2 38 0 464 213 85 85 chrX 33009742 33009930 -143964210 + MER5A DNA MER1_type 1 188 -1 1174 242 112 9 chrX 33010178 33010517 -143963623 + MLT1A2 LTR MaLR 1 374 0 961 188 0 0 chrX 33010658 33010818 -143963322 + MER44D DNA MER2_type 1 160 -545 503 204 0 0 chrX 33010967 33011055 -143963085 - MER44D DNA MER2_type 0 605 518 * 3322 156 16 7 chrX 33011050 33011615 -143962525 + MER44D DNA MER2_type 164 605 0 225 393 43 0 chrX 33011867 33012007 -143962133 - L2 LINE L2 -215 3057 2912 1306 285 40 7 chrX 33012034 33012455 -143961685 + LTR16A LTR ERVL 16 450 0 1763 172 63 3 chrX 33012609 33012987 -143961153 + L1MD3 LINE L1 7581 7981 -14 274 282 40 54 chrX 33012992 33013141 -143960999 - L2 LINE L2 -615 2699 2553 232 258 30 15 chrX 33013520 33013586 -143960554 - MER5A DNA MER1_type 0 189 123 200 333 39 26 chrX 33013578 33013656 -143960484 + MER5B DNA MER1_type 95 173 -5 * 613 261 22 18 chrX 33013825 33014047 -143960093 - L1ME3A LINE L1 -219 5951 5729 6844 186 53 34 chrX 33014161 33016214 -143957926 + L1MDa LINE L1 843 2929 -3611 1130 206 15 83 chrX 33016281 33016680 -143957460 + L1MDa LINE L1 4404 4775 -1765 1578 170 40 7 chrX 33016693 33016969 -143957171 + AluJo SINE Alu 13 297 -15 6992 181 19 21 chrX 33016970 33018331 -143955809 + L1MA2 LINE L1 19 1377 -6188 225 203 0 31 chrX 33018333 33018397 -143955743 + L1MA2 LINE L1 3661 3722 -3843 9654 147 39 129 chrX 33018398 33020458 -143953682 + L1MA2 LINE L1 3822 6067 -1656 2195 122 0 0 chrX 33020458 33020754 -143953386 - AluSx SINE Alu -16 296 1 9654 147 39 129 chrX 33020754 33021217 -143952923 + L1MA2 LINE L1 6067 6570 -1153 345 82 0 0 chrX 33021217 33021266 -143952874 + (CA)n Simple_repeat Simple_repeat 2 50 0 9654 147 39 129 chrX 33021266 33023050 -143951090 + L1MA2 LINE L1 6570 7721 -2 2448 215 78 27 chrX 33023068 33024255 -143949885 + L1MDa LINE L1 4771 6026 -610 566 223 57 0 chrX 33024275 33024432 -143949708 + L1MD2 LINE L1 6194 6359 0 698 243 39 19 chrX 33024619 33024825 -143949315 + MER63A DNA MER1_type 1 210 0 228 143 0 0 chrX 33024838 33024880 -143949260 + (TG)n Simple_repeat Simple_repeat 2 43 0 218 283 132 72 chrX 33025651 33025803 -143948337 + MIR SINE MIR 46 206 -56 382 261 322 4 chrX 33025859 33026089 -143948051 + L2 LINE L2 3011 3313 0 609 275 81 76 chrX 33026710 33027193 -143946947 - MLT1H LTR MaLR -1 548 25 492 241 157 63 chrX 33027246 33027437 -143946703 - MER63A DNA MER1_type -1 209 1 3562 256 44 34 chrX 33028275 33030389 -143943751 + L1M3e LINE L1 7 2886 -4220 3076 171 51 3 chrX 33030407 33030978 -143943162 + L1M3e LINE L1 3595 4204 -2902 2186 100 23 7 chrX 33030978 33031279 -143942861 + AluSq SINE Alu 1 306 -7 3076 171 51 3 chrX 33031279 33031379 -143942761 + L1M3e LINE L1 4204 4298 -2808 6746 208 125 119 chrX 33031380 33033289 -143940851 + L1MA8 LINE L1 3 1933 -4916 2617 132 31 5 chrX 33033289 33033705 -143940435 - MSTA LTR MaLR 0 428 2 6746 208 125 119 chrX 33033705 33034635 -143939505 + L1MA8 LINE L1 1933 2857 -3992 528 70 0 0 chrX 33034638 33034709 -143939431 + MADE1 DNA Mariner 1 71 -9 931 191 9 22 chrX 33034710 33034941 -143939199 + L1MA8 LINE L1 2865 3092 -3756 * 957 178 23 46 chrX 33034939 33035158 -143938982 + L1MA8 LINE L1 3328 3541 -3307 * 5350 141 28 27 chrX 33035132 33035252 -143938888 + L1MA8 LINE L1 5062 5180 -1822 1668 178 20 17 chrX 33035252 33035544 -143938596 + AluJb SINE Alu 1 293 -19 5350 141 28 27 chrX 33035544 33035807 -143938333 + L1MA8 LINE L1 5180 5441 -1561 800 111 24 8 chrX 33035807 33035933 -143938207 + FLAM_C SINE Alu 1 128 -5 5350 141 28 27 chrX 33035933 33037455 -143936685 + L1MA8 LINE L1 5441 7001 -1 513 176 331 0 chrX 33037738 33037874 -143936266 + MER5A DNA MER1_type 9 189 0 431 221 63 0 chrX 33039315 33039410 -143934730 + L2 LINE L2 3212 3312 -1 348 251 49 137 chrX 33039813 33040120 -143934020 + L1ME4a LINE L1 5304 5583 -2225 337 301 9 0 chrX 33040216 33040329 -143933811 + L1ME4a LINE L1 5725 5838 -283 245 222 0 0 chrX 33040876 33040921 -143933219 + L2 LINE L2 3257 3301 -12 1385 230 39 48 chrX 33041967 33042078 -143932062 - L1MC4 LINE L1 -32 8010 7899 306 0 0 0 chrX 33042078 33042112 -143932028 + (TA)n Simple_repeat Simple_repeat 2 35 0 1385 230 39 48 chrX 33042112 33042435 -143931705 - L1MC4 LINE L1 -143 7899 7580 4482 100 43 4 chrX 33042486 33043187 -143930953 - L1MA3 LINE L1 0 6305 5578 544 196 55 55 chrX 33043191 33043390 -143930750 - L1MC4 LINE L1 -452 7590 7392 1340 254 83 10 chrX 33043397 33043795 -143930345 - L1MC4 LINE L1 -1940 5868 5442 329 277 104 9 chrX 33043799 33044019 -143930121 - L1MC4 LINE L1 -2304 5504 5264 360 284 28 66 chrX 33044055 33044127 -143930013 - L1MC4 LINE L1 -905 5241 5168 1897 151 35 0 chrX 33044127 33044465 -143929675 - L1MA9 LINE L1 0 6312 5963 360 284 28 66 chrX 33044465 33044603 -143929537 - L1MC4 LINE L1 -978 5168 5039 799 302 24 41 chrX 33044711 33045006 -143929134 - LTR16A1 LTR ERVL 0 457 168 338 340 58 6 chrX 33045763 33045919 -143928221 + MIR SINE MIR 65 228 -34 627 345 110 46 chrX 33045939 33046400 -143927740 + L2 LINE L2 215 645 -2669 1764 67 14 9 chrX 33046400 33046623 -143927517 - AluY SINE Alu -9 302 79 627 345 110 46 chrX 33046623 33046749 -143927391 + L2 LINE L2 645 761 -2553 2208 137 33 0 chrX 33046749 33047086 -143927054 - MER7A DNA MER2_type 0 346 1 627 345 110 46 chrX 33047086 33047148 -143926992 + L2 LINE L2 761 818 -2496 2310 95 3 0 chrX 33047148 33047444 -143926696 - AluSq SINE Alu -16 297 1 627 345 110 46 chrX 33047444 33048449 -143925691 + L2 LINE L2 818 1978 -1336 9874 210 15 10 chrX 33048466 33049954 -143924186 + L1P4 LINE L1 3078 4587 -1579 2025 106 64 22 chrX 33049954 33050313 -143923827 - THE1C LTR MaLR 0 375 2 9874 210 15 10 chrX 33050313 33051171 -143922969 + L1P4 LINE L1 4587 5439 -727 5116 162 15 10 chrX 33051166 33052526 -143921614 + L1MB5 LINE L1 4801 6166 -8 * 334 364 83 20 chrX 33052537 33052839 -143921301 + L2 LINE L2 2376 2696 -618 1137 172 0 5 chrX 33052852 33053038 -143921102 - MER5A DNA MER1_type -3 186 2 268 298 65 16 chrX 33053192 33053316 -143920824 - LTR67 LTR ERVL 0 557 428 431 169 60 12 chrX 33053409 33053492 -143920648 - Tigger5 DNA MER2_type -1 2322 2236 * 1277 245 0 0 chrX 33053486 33053719 -143920421 - Tigger5 DNA MER2_type -2090 233 1 405 346 79 0 chrX 33054022 33054149 -143919991 + L2 LINE L2 3136 3272 0 2157 242 24 17 chrX 33054408 33054983 -143919157 - L1ME1 LINE L1 -8 6227 5649 6588 247 63 19 chrX 33054984 33057301 -143916839 + L1MB8 LINE L1 3 2409 -4550 243 260 10 58 chrX 33057466 33057570 -143916570 + L1MB8 LINE L1 2476 2574 -4564 1465 175 29 92 chrX 33057655 33058100 -143916040 + L1MB8 LINE L1 4416 4832 -2125 * 3242 209 34 12 chrX 33058092 33058821 -143915319 + L1MB8 LINE L1 6239 6983 -6 3605 219 70 28 chrX 33058857 33060224 -143913916 - L1ME1 LINE L1 -577 5658 4238 1839 223 90 14 chrX 33060213 33060895 -143913245 - L1ME1 LINE L1 -3666 2549 1866 * 556 274 7 59 chrX 33060896 33060958 -143913182 + MER58A DNA MER1_type 1 65 -276 2179 118 0 0 chrX 33060958 33061247 -143912893 - AluSx SINE Alu -23 289 1 556 274 7 59 chrX 33061247 33061337 -143912803 + MER58A DNA MER1_type 65 145 -79 2099 182 60 24 chrX 33061342 33061755 -143912385 + MSTA LTR MaLR 1 428 0 4164 164 9 25 chrX 33061755 33061897 -143912243 + MSTA-int LTR MaLR 1 144 -1507 2223 107 7 0 chrX 33061897 33062195 -143911945 - AluSc SINE Alu -9 300 1 4164 164 9 25 chrX 33062195 33062807 -143911333 + MSTA-int LTR MaLR 144 743 -908 * 5339 161 9 31 chrX 33062795 33063728 -143910412 - MST-int LTR MaLR -4 1647 736 563 162 6 0 chrX 33063731 33063833 -143910307 + MSTA-int LTR MaLR 1288 1462 -186 356 162 0 15 chrX 33063825 33063893 -143910247 + MSTA-int LTR MaLR 1585 1651 0 * 2113 174 61 15 chrX 33063893 33064302 -143909838 + MSTA LTR MaLR 1 428 0 289 250 28 0 chrX 33064304 33064376 -143909764 + MER58A DNA MER1_type 149 222 -2 2358 259 61 15 chrX 33064382 33065397 -143908743 - L1ME1 LINE L1 -4532 1864 803 492 88 9 115 chrX 33065486 33065599 -143908541 - THE1C-int LTR MaLR -1546 105 5 1832 158 41 19 chrX 33065603 33065969 -143908171 - THE1C LTR MaLR 0 375 2 2289 248 47 6 chrX 33065973 33066506 -143907634 + MER76 LTR ERV 134 688 0 358 198 62 12 chrX 33066506 33066585 -143907555 - MLT1H LTR MaLR -329 220 138 257 316 107 8 chrX 33066836 33067080 -143907060 - L2 LINE L2 0 3313 3046 1626 209 46 0 chrX 33067185 33067534 -143906606 + MLT1A1 LTR MaLR 1 365 0 2042 95 20 48 chrX 33070209 33070566 -143903574 - L1MA2 LINE L1 0 6304 5958 12062 170 59 20 chrX 33070583 33074265 -143899875 - L1MA2 LINE L1 -242 7481 3465 1705 196 3 3 chrX 33074265 33074571 -143899569 - AluJb SINE Alu -6 306 1 12062 170 59 20 chrX 33074571 33076407 -143897733 - L1MA2 LINE L1 -4258 3465 1703 801 203 16 22 chrX 33076418 33076600 -143897540 - L1M1 LINE L1 -7147 418 238 352 105 18 0 chrX 33076614 33076671 -143897469 - L1M4b LINE L1 -5564 1295 1238 1904 248 52 14 chrX 33076676 33077115 -143897025 - L1M4b LINE L1 -6403 456 1 277 315 0 0 chrX 33077118 33077210 -143896930 - L1MEd LINE L1 -5965 154 63 273 389 54 57 chrX 33077228 33077508 -143896632 + L2 LINE L2 2994 3272 0 16697 135 42 7 chrX 33077602 33080225 -143893915 - Tigger2 DNA MER2_type -2 2716 2 1452 221 39 28 chrX 33080383 33080812 -143893328 - MER74A LTR ERVL -35 523 9 307 51 0 0 chrX 33081847 33081886 -143892254 - MER74C LTR ERVL -418 42 4 1168 261 80 62 chrX 33082139 33082183 -143891957 + MLT1J LTR MaLR 1 43 -468 468 0 0 0 chrX 33082183 33082235 -143891905 + (TG)n Simple_repeat Simple_repeat 1 52 0 1168 261 80 62 chrX 33082235 33082692 -143891448 + MLT1J LTR MaLR 43 511 0 1453 97 0 0 chrX 33082720 33082905 -143891235 - AluSq SINE Alu -128 185 1 2311 87 0 3 chrX 33083092 33083390 -143890750 + AluSc SINE Alu 1 297 -12 239 315 14 0 chrX 33083539 33083612 -143890528 - MIR SINE MIR -16 246 173 266 105 0 0 chrX 33083614 33083652 -143890488 - tRNA-Leu-TTG tRNA tRNA -48 38 1 335 276 194 15 chrX 33083654 33083788 -143890352 - MIR SINE MIR -76 186 29 1707 217 86 9 chrX 33084491 33084920 -143889220 - LTR40b LTR ERVL 0 462 1 786 274 67 80 chrX 33085512 33085931 -143888209 + L2 LINE L2 946 1360 -1954 1039 184 39 67 chrX 33085931 33086213 -143887927 + ORSL DNA AcHobo 2 275 0 786 274 67 80 chrX 33086213 33086268 -143887872 + L2 LINE L2 1360 1414 -1900 334 118 0 20 chrX 33086350 33086401 -143887739 - MER20 DNA MER1_type 0 219 170 180 328 0 35 chrX 33086661 33086719 -143887421 + L3 LINE CR1 1515 1570 -7 831 217 17 29 chrX 33087430 33087605 -143886535 + MER58B DNA MER1_type 169 341 0 599 233 61 0 chrX 33087696 33087859 -143886281 - MER5B DNA MER1_type -4 174 2 189 0 0 0 chrX 33088054 33088075 -143886065 + (CATA)n Simple_repeat Simple_repeat 2 22 0 332 318 9 0 chrX 33088204 33088311 -143885829 + L2 LINE L2 2280 2387 -927 792 200 7 0 chrX 33088327 33088477 -143885663 + L1MB7 LINE L1 16 166 -6376 296 252 47 47 chrX 33088451 33088558 -143885582 + L1MA2 LINE L1 1 107 -7458 * 6714 72 3 0 chrX 33088560 33090018 -143884122 + L1PA13 LINE L1 4696 6157 -6 354 119 373 104 chrX 33090110 33090244 -143883896 + L1MA2 LINE L1 96 265 -7300 13952 155 110 7 chrX 33090267 33095489 -143878651 + L1MA2 LINE L1 1078 6878 -743 2606 107 3 8 chrX 33095489 33095855 -143878285 + THE1B LTR MaLR 1 364 0 2250 107 3 0 chrX 33095897 33096196 -143877944 + THE1B LTR MaLR 65 364 0 5884 79 11 16 chrX 33096198 33096576 -143877564 + L1MA2 LINE L1 6871 7250 -473 2444 97 0 0 chrX 33096576 33096887 -143877253 + AluSx SINE Alu 1 311 -1 5884 79 11 16 chrX 33096887 33097366 -143876774 + L1MA2 LINE L1 7250 7723 0 522 212 0 109 chrX 33097384 33097549 -143876591 + L1MB7 LINE L1 1074 1220 -6243 * 1871 216 57 7 chrX 33097547 33098053 -143876087 + L1MB7 LINE L1 1571 2251 -5216 790 265 40 0 chrX 33098095 33098381 -143875759 + L1MB7 LINE L1 3519 3815 -3750 5962 121 9 4 chrX 33098581 33099513 -143874627 - L1MA5 LINE L1 -3 6297 5362 641 188 7 0 chrX 33099511 33099649 -143874491 + L1MB7 LINE L1 3803 3941 -3624 * 516 219 0 0 chrX 33099649 33099745 -143874395 - AluSx SINE Alu -12 298 203 877 146 0 0 chrX 33099745 33099868 -143874272 - AluSx SINE Alu -189 123 1 4464 234 28 24 chrX 33099869 33100022 -143874118 + L1MB7 LINE L1 3931 4082 -3483 2000 177 14 22 chrX 33100022 33100390 -143873750 - MLT1A1 LTR MaLR 0 365 1 8785 192 20 44 chrX 33100390 33102168 -143871972 - MLT1A1-int LTR MaLR 0 1735 1 2082 176 14 0 chrX 33102168 33102525 -143871615 - MLT1A1 LTR MaLR 0 365 4 4464 234 28 24 chrX 33102525 33102913 -143871227 + L1MB7 LINE L1 4082 4467 -3098 2272 119 0 0 chrX 33102913 33103223 -143870917 + AluSx SINE Alu 1 310 -2 4464 234 28 24 chrX 33103223 33103990 -143870150 + L1MB7 LINE L1 4467 5248 -2317 * 4883 172 40 18 chrX 33103986 33104932 -143869208 + L1MB7 LINE L1 6331 7326 -277 3747 114 15 0 chrX 33104932 33105451 -143868689 + MER1A DNA MER1_type 1 527 0 4883 172 40 18 chrX 33105451 33105736 -143868404 + L1MB7 LINE L1 7326 7603 0 435 333 102 17 chrX 33105750 33106044 -143868096 + L2 LINE L2 2387 2705 -609 2496 250 109 27 chrX 33106065 33107239 -143866901 - L1ME3A LINE L1 -8 6162 4885 267 288 0 0 chrX 33108373 33108432 -143865708 + L2 LINE L2 3248 3306 -7 21 57 0 0 chrX 33108665 33108700 -143865440 + AT_rich Low_complexity Low_complexity 1 35 0 492 275 119 29 chrX 33109221 33109465 -143864675 + LTR33 LTR ERVL 45 310 -211 207 0 0 0 chrX 33110719 33110742 -143863398 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6378 222 73 79 chrX 33110751 33110883 -143863257 + L1MEc LINE L1 34 165 -6050 2585 163 38 65 chrX 33110883 33111410 -143862730 - MLT2B2 LTR ERVL -2 513 1 6378 222 73 79 chrX 33111410 33111742 -143862398 + L1MEc LINE L1 165 498 -5717 754 141 0 0 chrX 33111742 33111877 -143862263 + L1MA8 LINE L1 6146 6280 -11 6378 222 73 79 chrX 33111877 33113810 -143860330 + L1MEc LINE L1 498 2369 -3846 4409 134 12 8 chrX 33113810 33114540 -143859600 + L1PB4 LINE L1 5417 6149 -7 6378 222 73 79 chrX 33114540 33115804 -143858336 + L1MEc LINE L1 2369 3639 -2576 13124 204 38 26 chrX 33115951 33121439 -143852701 + L1PB1 LINE L1 6 5621 -1241 2044 65 0 0 chrX 33121458 33121720 -143852420 - L1PA6 LINE L1 0 6154 5893 6091 106 2 1 chrX 33121720 33122982 -143851158 + L1PB1 LINE L1 5607 6867 0 5927 195 72 31 chrX 33122991 33124614 -143849526 + L1MEc LINE L1 3646 5356 -879 306 0 0 0 chrX 33124614 33124648 -143849492 + (CA)n Simple_repeat Simple_repeat 2 35 0 5927 195 72 31 chrX 33124648 33125058 -143849082 + L1MEc LINE L1 5356 5748 -487 6115 98 24 17 chrX 33125073 33126235 -143847905 - L1PB3 LINE L1 -5 6149 4983 12947 213 29 12 chrX 33126230 33130852 -143843288 + L1PA16 LINE L1 1625 6164 -2 831 324 72 30 chrX 33131045 33131545 -143842595 - LTR33 LTR ERVL 0 521 1 2956 118 24 9 chrX 33131955 33132831 -143841309 - THE1C-int LTR MaLR -652 928 1 2260 117 53 11 chrX 33132831 33133191 -143840949 - THE1C LTR MaLR 0 375 1 192 158 0 0 chrX 33133662 33133700 -143840440 + C-rich Low_complexity Low_complexity 1 38 0 286 250 228 0 chrX 33134694 33134786 -143839354 + MER5A DNA MER1_type 77 189 0 21 0 0 0 chrX 33134910 33134931 -143839209 + AT_rich Low_complexity Low_complexity 1 21 0 1123 204 35 0 chrX 33135214 33135445 -143838695 + Charlie1 DNA MER1_type 1 239 -2522 716 157 37 0 chrX 33135432 33135566 -143838574 + Charlie1 DNA MER1_type 2623 2761 0 * 254 268 0 42 chrX 33135662 33135733 -143838407 - L2 LINE L2 -2 3270 3203 344 102 0 17 chrX 33135733 33135792 -143838348 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 288 329 0 0 chrX 33135900 33135976 -143838164 - MER5B DNA MER1_type -100 78 3 28 29 0 0 chrX 33136723 33136758 -143837382 + AT_rich Low_complexity Low_complexity 1 35 0 452 293 35 0 chrX 33137370 33137486 -143836654 - L2 LINE L2 -5 3267 3148 204 347 0 14 chrX 33137637 33137709 -143836431 - L2 LINE L2 -236 3036 2966 548 340 158 23 chrX 33138030 33138548 -143835592 + L3 LINE CR1 616 1203 -374 23 0 0 0 chrX 33138745 33138768 -143835372 + AT_rich Low_complexity Low_complexity 1 23 0 2248 96 0 3 chrX 33138855 33139146 -143834994 - AluSx SINE Alu -14 298 9 1750 130 0 0 chrX 33139147 33139432 -143834708 - L1P LINE L1 -1681 4465 4181 701 250 60 6 chrX 33139788 33139956 -143834184 + MER5A DNA MER1_type 13 189 0 1469 175 35 6 chrX 33140052 33140366 -143833774 - MER45B DNA AcHobo 0 1040 718 1359 291 32 32 chrX 33140475 33140942 -143833198 - MER45C DNA AcHobo -189 764 298 * 1558 265 65 0 chrX 33140928 33141340 -143832800 - MER45C DNA AcHobo -514 439 1 486 336 101 34 chrX 33141454 33141892 -143832248 + L2 LINE L2 2804 3270 -2 24 0 0 0 chrX 33142309 33142333 -143831807 + AT_rich Low_complexity Low_complexity 1 24 0 792 199 61 51 chrX 33143115 33143311 -143830829 + MIR SINE MIR 1 198 -64 2841 260 19 32 chrX 33143349 33144171 -143829969 + L1M3c LINE L1 1 812 -5329 2459 89 17 1 chrX 33144199 33144658 -143829482 - L1P4 LINE L1 -550 5615 5149 3291 125 10 0 chrX 33144658 33145149 -143828991 + L1PA15 LINE L1 5661 6160 -5 4136 131 8 22 chrX 33145149 33145854 -143828286 + L1MA6 LINE L1 5601 6300 0 2349 67 0 7 chrX 33145916 33146214 -143827926 - AluY SINE Alu -15 296 1 725 262 27 23 chrX 33146293 33146514 -143827626 + MLT1H LTR MaLR 79 300 -249 353 156 0 0 chrX 33146634 33146698 -143827442 + MLT1H LTR MaLR 483 546 -3 1025 154 21 113 chrX 33146723 33146918 -143827222 + MER20 DNA MER1_type 2 173 -46 2371 92 10 0 chrX 33146918 33147223 -143826917 + AluSx SINE Alu 1 308 -4 1025 154 21 113 chrX 33147223 33147267 -143826873 + MER20 DNA MER1_type 173 219 0 242 123 18 0 chrX 33147272 33147329 -143826811 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chrX 33147387 33147408 -143826732 + AT_rich Low_complexity Low_complexity 1 21 0 195 208 38 57 chrX 33149523 33149576 -143824564 + L2 LINE L2 3253 3304 -9 478 266 28 21 chrX 33150282 33150425 -143823715 + MIR SINE MIR 16 159 -103 1857 207 32 36 chrX 33150425 33150894 -143823246 - MLT1C LTR MaLR 0 467 1 1345 268 66 77 chrX 33151284 33151918 -143822222 + L1MDb LINE L1 141 767 -5776 3447 212 54 42 chrX 33151921 33153297 -143820843 + L1MDb LINE L1 601 1991 -4549 270 229 14 14 chrX 33153297 33153367 -143820773 + L1MDb LINE L1 1931 2000 -4540 17626 143 34 2 chrX 33153367 33156308 -143817832 + L1M1 LINE L1 12 3046 -4519 2303 75 3 0 chrX 33156308 33156590 -143817550 + AluSg SINE Alu 14 296 -14 6910 58 10 1 chrX 33156590 33157908 -143816232 + L1PA6 LINE L1 4829 6154 0 2016 165 21 16 chrX 33157915 33158340 -143815800 + L1MD1 LINE L1 5816 6242 0 520 179 34 102 chrX 33159904 33160045 -143814095 - LTR37B LTR ERV1 0 468 348 2188 99 0 3 chrX 33160045 33160327 -143813813 + AluSq SINE Alu 21 301 -12 520 179 34 102 chrX 33160327 33160420 -143813720 - LTR37B LTR ERV1 -120 348 250 553 211 16 53 chrX 33160507 33160583 -143813557 - LTR37B LTR ERV1 -279 189 112 948 165 74 0 chrX 33160583 33160759 -143813381 + MER5A DNA MER1_type 1 189 0 553 211 16 53 chrX 33160759 33160872 -143813268 - LTR37B LTR ERV1 -356 112 7 653 241 51 0 chrX 33161173 33161331 -143812809 - MER58A DNA MER1_type -50 174 9 486 291 13 6 chrX 33161374 33161532 -143812608 - MLT1I LTR MaLR -250 159 1 696 352 88 30 chrX 33161868 33162643 -143811497 + L2 LINE L2 1823 2642 -672 1984 72 25 4 chrX 33163199 33163475 -143810665 - L1PB1 LINE L1 -1 6150 5869 1530 222 0 13 chrX 33163488 33163803 -143810337 - MER74B LTR ERVL -250 372 62 411 21 0 0 chrX 33163923 33163971 -143810169 + (TG)n Simple_repeat Simple_repeat 1 48 0 680 306 121 3 chrX 33164086 33164449 -143809691 + L1MEd LINE L1 120 525 -5594 309 295 33 25 chrX 33164450 33164572 -143809568 + MLT1I LTR MaLR 2 124 -285 5651 116 9 4 chrX 33164739 33165935 -143808205 - L1PA16 LINE L1 -3 6163 4960 2323 102 64 3 chrX 33165935 33166278 -143807862 - THE1B LTR MaLR 0 364 1 5651 116 9 4 chrX 33166278 33166291 -143807849 - L1PA16 LINE L1 -1206 4960 4949 279 222 0 0 chrX 33166307 33166370 -143807770 + MLT1I LTR MaLR 308 370 -39 225 0 0 0 chrX 33166403 33166428 -143807712 + (CA)n Simple_repeat Simple_repeat 2 26 0 15529 182 34 7 chrX 33166708 33169719 -143804421 + L1M1 LINE L1 20 3112 -4453 3109 195 43 8 chrX 33169721 33171264 -143802876 + L1PA8 LINE L1 4505 6158 -14 699 128 23 76 chrX 33171307 33171479 -143802661 + L1M1 LINE L1 3123 3285 -4280 443 191 20 34 chrX 33171526 33171673 -143802467 + L1MA7 LINE L1 6140 6284 -7 239 354 10 56 chrX 33171689 33171884 -143802256 + L1MEd LINE L1 562 747 -5372 9768 164 14 1 chrX 33171972 33174817 -143799323 + L1MA1 LINE L1 2768 5649 -1916 6699 124 14 27 chrX 33174876 33176576 -143797564 + L1MA1 LINE L1 6037 7714 -7 1030 159 18 12 chrX 33176578 33176748 -143797392 + AluJo SINE Alu 120 290 -22 405 317 19 29 chrX 33176774 33176982 -143797158 + L1MEd LINE L1 899 1104 -5206 273 208 8 64 chrX 33177114 33177239 -143796901 + L1MEd LINE L1 1280 1397 -4913 1520 156 8 0 chrX 33177683 33177927 -143796213 - L1PB3 LINE L1 -1 6153 5908 354 156 10 73 chrX 33177975 33178071 -143796069 - MER5C DNA MER1_type -2 322 233 519 252 42 0 chrX 33178099 33178218 -143795922 - MER5C DNA MER1_type -200 124 1 2544 52 3 3 chrX 33178691 33179001 -143795139 - AluY SINE Alu -1 310 1 463 256 33 0 chrX 33179948 33180069 -143794071 - MER103 DNA DNA -16 150 26 24 0 0 0 chrX 33180098 33180122 -143794018 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 33180224 33180260 -143793880 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 33180313 33180364 -143793776 + AT_rich Low_complexity Low_complexity 1 51 0 721 246 19 0 chrX 33180384 33180595 -143793545 + L1MEd LINE L1 2316 2530 -3599 742 134 16 0 chrX 33180603 33180730 -143793410 - L1PA15 LINE L1 -5 6160 6032 1792 98 0 45 chrX 33180730 33180976 -143793164 - AluSc SINE Alu -74 235 1 6488 226 81 10 chrX 33180976 33183044 -143791096 - L1PA12 LINE L1 -2571 5013 2777 2331 150 0 0 chrX 33184258 33184657 -143789483 - L1P LINE L1 -914 5232 4834 743 103 29 22 chrX 33184657 33184793 -143789347 + L1P LINE L1 5226 5362 -784 305 185 0 0 chrX 33184800 33184865 -143789275 + L1PA11 LINE L1 6110 6174 0 25 31 0 0 chrX 33185136 33185168 -143788972 + AT_rich Low_complexity Low_complexity 1 32 0 5853 105 6 1 chrX 33185168 33185691 -143788449 + L1PA11 LINE L1 5293 5823 -351 186 43 0 0 chrX 33185691 33185714 -143788426 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5853 105 6 1 chrX 33185714 33186068 -143788072 + L1PA11 LINE L1 5823 6174 0 1885 126 47 9 chrX 33186418 33186736 -143787404 - MER4D LTR ERV1 -569 334 5 2373 119 57 28 chrX 33186738 33187175 -143786965 + LTR7 LTR ERV1 1 450 0 374 278 113 0 chrX 33187201 33187334 -143786806 - Charlie7 DNA MER1_type -2430 182 35 31 0 0 0 chrX 33187841 33187872 -143786268 + AT_rich Low_complexity Low_complexity 1 31 0 1043 267 74 56 chrX 33188266 33188455 -143785685 - MLT1E LTR MaLR -58 535 351 216 0 0 0 chrX 33188455 33188479 -143785661 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1421 203 25 7 chrX 33188481 33188757 -143785383 - AluJo SINE Alu -31 281 1 1043 267 74 56 chrX 33188757 33189055 -143785085 - MLT1E LTR MaLR -242 351 1 2257 121 3 0 chrX 33189341 33189639 -143784501 + AluSx SINE Alu 2 300 -12 289 66 33 33 chrX 33189915 33189976 -143784164 + (TTTTTG)n Simple_repeat Simple_repeat 2 62 0 1891 69 0 9 chrX 33189977 33190208 -143783932 - AluY SINE Alu -82 229 1 2825 251 47 1 chrX 33190295 33190995 -143783145 + L1M3b LINE L1 507 1238 -5541 3507 227 37 41 chrX 33191093 33192049 -143782091 + L1M3b LINE L1 1086 2037 -4742 2353 183 8 6 chrX 33192048 33192566 -143781574 + L1 LINE L1 4219 4737 -1409 * 881 229 13 20 chrX 33192564 33192967 -143781173 + L1M3b LINE L1 2024 2425 -4424 * 2443 165 16 12 chrX 33192967 33193391 -143780749 + MSTB LTR MaLR 1 426 0 9475 164 11 11 chrX 33193391 33195042 -143779098 + MSTB-int LTR MaLR 1 1651 0 872 144 14 7 chrX 33195042 33195188 -143778952 + MSTB LTR MaLR 1 147 -279 627 106 8 98 chrX 33195186 33195309 -143778831 + MSTB LTR MaLR 315 426 -2 * 13673 192 42 18 chrX 33195313 33196470 -143777670 + L1MA7 LINE L1 2816 3945 -3765 2004 127 3 10 chrX 33196470 33196761 -143777379 + AluSq SINE Alu 3 291 -22 13673 192 42 18 chrX 33196761 33197068 -143777072 + L1MA7 LINE L1 3945 4243 -3467 4228 120 9 14 chrX 33197068 33197724 -143776416 + L1PA15 LINE L1 5512 6164 -1 13673 192 42 18 chrX 33197724 33200803 -143773337 + L1MA7 LINE L1 4243 7475 -235 504 149 30 45 chrX 33200814 33200930 -143773210 + L1MA7 LINE L1 7576 7707 -3 361 295 23 54 chrX 33200986 33201115 -143773025 - LTR16C LTR ERVL -282 209 85 465 299 0 6 chrX 33202075 33202239 -143771901 + MER103 DNA DNA 4 166 0 627 339 28 0 chrX 33202696 33202914 -143771226 + MER115 DNA AcHobo 53 276 -417 232 211 19 0 chrX 33202987 33203039 -143771101 + MER115 DNA AcHobo 388 440 -253 266 250 0 0 chrX 33203057 33203113 -143771027 + Zaphod DNA AcHobo 3976 4031 0 199 293 73 65 chrX 33204204 33204228 -143769912 + MER5A DNA MER1_type 38 60 -129 767 205 94 0 chrX 33204228 33204399 -143769741 - MER5A DNA MER1_type -2 187 1 199 293 73 65 chrX 33204399 33204497 -143769643 + MER5A DNA MER1_type 60 161 -28 208 234 0 16 chrX 33204685 33204749 -143769391 + (TTTG)n Simple_repeat Simple_repeat 1 63 0 687 190 0 0 chrX 33204993 33205109 -143769031 - FLAM_A SINE Alu -7 135 20 2182 179 47 2 chrX 33205431 33205860 -143768280 + L1MA4A LINE L1 4857 5312 -834 408 20 0 0 chrX 33205860 33205909 -143768231 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 179 47 2 chrX 33205909 33205966 -143768174 + L1MA4A LINE L1 5312 5365 -781 5760 98 39 2 chrX 33207477 33208369 -143765771 + L1MA4A LINE L1 5352 6276 -27 498 274 40 8 chrX 33208695 33208872 -143765268 - MLT1J2 LTR MaLR -32 418 238 1832 155 39 18 chrX 33208950 33209338 -143764802 - L1MA7 LINE L1 -2 6289 5894 2463 158 24 0 chrX 33209339 33209796 -143764344 - L1MA7 LINE L1 -542 5749 5282 20879 162 16 14 chrX 33209831 33217519 -143756621 - L1MA3 LINE L1 -3 7721 22 2755 195 12 48 chrX 33217519 33217984 -143756156 - L1MA7 LINE L1 -871 5275 4795 1977 147 128 8 chrX 33217984 33218366 -143755774 - MSTA LTR MaLR 0 428 1 9385 129 22 36 chrX 33218366 33219966 -143754174 - MSTA-int LTR MaLR 0 1580 3 1875 168 119 13 chrX 33219968 33220355 -143753785 - MSTA LTR MaLR 0 428 1 2755 195 12 48 chrX 33220355 33220620 -143753520 - L1MA7 LINE L1 -1351 4795 4567 499 236 61 0 chrX 33220625 33220773 -143753367 - MLT1J2 LTR MaLR -285 165 9 1618 213 35 32 chrX 33220804 33220845 -143753295 - MLT1C LTR MaLR 0 467 428 2107 149 58 31 chrX 33220845 33221262 -143752878 + MSTA LTR MaLR 1 428 0 1618 213 35 32 chrX 33221262 33221681 -143752459 - MLT1C LTR MaLR -39 428 6 656 179 150 8 chrX 33221699 33222152 -143751988 - MLT1E1 LTR MaLR -64 590 1 2239 126 0 0 chrX 33222224 33222526 -143751614 + AluSq SINE Alu 1 302 -11 2004 121 170 16 chrX 33223088 33223459 -143750681 - MSTA LTR MaLR 0 428 1 526 232 28 66 chrX 33223636 33223817 -143750323 - MER96 DNA MER1_type 0 175 2 310 298 28 21 chrX 33224088 33224229 -143749911 - L1ME4a LINE L1 -26 6095 5954 490 256 112 11 chrX 33224740 33224954 -143749186 - MIR SINE MIR 0 262 26 324 313 133 33 chrX 33225290 33225501 -143748639 - MIR SINE MIR -5 257 26 831 286 76 8 chrX 33225919 33226322 -143747818 + L1MC4 LINE L1 7270 7594 -367 1175 174 26 17 chrX 33226360 33226590 -143747550 - MSTB1 LTR MaLR 0 432 201 20073 181 24 11 chrX 33226595 33231967 -143742173 + L1M1 LINE L1 41 5492 -2073 6973 171 57 19 chrX 33232108 33235326 -143738814 + L1MA1 LINE L1 2747 6295 -7 1017 182 0 0 chrX 33235328 33235498 -143738642 + AluJo SINE Alu 121 290 -22 406 317 19 29 chrX 33235524 33235732 -143738408 + L1MEc LINE L1 985 1190 -5206 260 240 0 70 chrX 33235864 33235964 -143738176 + L1MEc LINE L1 1217 1309 -4908 1527 156 8 0 chrX 33236433 33236677 -143737463 - L1PB3 LINE L1 -1 6153 5908 355 156 10 73 chrX 33236725 33236821 -143737319 - MER5C DNA MER1_type -2 322 233 526 252 42 0 chrX 33236849 33236968 -143737172 - MER5C DNA MER1_type -200 124 1 2538 52 3 3 chrX 33237441 33237751 -143736389 - AluY SINE Alu -1 310 1 495 264 32 0 chrX 33238698 33238823 -143735317 - MER103 DNA DNA -16 150 22 24 0 0 0 chrX 33238848 33238872 -143735268 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 33238974 33239010 -143735130 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chrX 33239063 33239114 -143735026 + AT_rich Low_complexity Low_complexity 1 51 0 775 246 19 0 chrX 33239134 33239345 -143734795 + L1MEc LINE L1 2402 2616 -3599 730 148 16 0 chrX 33239353 33239481 -143734659 - L1PA15 LINE L1 -4 6161 6032 1865 68 4 4 chrX 33239481 33239717 -143734423 - AluY SINE Alu -75 236 1 3060 251 47 1 chrX 33239804 33240504 -143733636 + L1M3b LINE L1 9 740 -5541 1458 263 38 73 chrX 33240602 33241108 -143733032 + L1M3b LINE L1 588 1075 -5206 1678 158 25 0 chrX 33291509 33291788 -143682352 + AluSq SINE Alu 24 309 -4 495 239 37 101 chrX 33292653 33292830 -143681310 + L1MEc LINE L1 1704 1891 -4505 2274 108 3 0 chrX 33292830 33293126 -143681014 - AluSx SINE Alu -15 297 1 495 239 37 101 chrX 33293126 33293353 -143680787 + L1MEc LINE L1 1891 2082 -4314 2344 83 3 0 chrX 33293497 33293787 -143680353 + AluSx SINE Alu 1 291 -21 1332 221 59 27 chrX 33293865 33293968 -143680172 + L1MB7 LINE L1 4665 4763 -1383 1864 106 7 0 chrX 33293968 33294242 -143679898 + L1MA8 LINE L1 6012 6287 -4 1332 221 59 27 chrX 33294242 33294560 -143679580 + L1MB7 LINE L1 4763 5069 -1077 3302 137 14 78 chrX 33294560 33294780 -143679360 + MLT2B3 LTR ERVL 1 234 -320 294 29 0 0 chrX 33294780 33294815 -143679325 + (TC)n Simple_repeat Simple_repeat 2 36 0 3302 137 14 78 chrX 33294815 33295186 -143678954 + MLT2B3 LTR ERVL 234 554 0 4584 230 19 38 chrX 33295190 33296281 -143677859 + MLT-int LTR MaLR 5 1075 -660 2551 164 28 14 chrX 33296291 33296805 -143677335 - LTR27 LTR ERV1 -11 490 2 3099 227 30 0 chrX 33296805 33297399 -143676741 + MSTC-int LTR MaLR 1124 1735 0 1061 199 137 59 chrX 33297399 33297756 -143676384 + MSTC LTR MaLR 1 385 -43 298 83 125 0 chrX 33299543 33299591 -143674549 + MSTC LTR MaLR 403 456 -1 3287 185 90 41 chrX 33299592 33299723 -143674417 + L1MB7 LINE L1 5062 5185 -999 2285 123 0 0 chrX 33299723 33300032 -143674108 + AluSq SINE Alu 1 309 -4 3287 185 90 41 chrX 33300032 33300575 -143673565 + L1MB7 LINE L1 5185 5700 -484 1790 171 0 23 chrX 33300575 33300874 -143673266 + AluJb SINE Alu 1 292 -20 3287 185 90 41 chrX 33300874 33301116 -143673024 + L1MB7 LINE L1 5700 5929 -255 2357 93 3 0 chrX 33301116 33301407 -143672733 - AluSp SINE Alu -21 292 1 3287 185 90 41 chrX 33301407 33301543 -143672597 + L1MB7 LINE L1 5929 6184 0 405 0 0 0 chrX 33301768 33301813 -143672327 + (TA)n Simple_repeat Simple_repeat 1 45 0 45367 36 2 1 chrX 33301816 33307960 -143666180 + L1PA4 LINE L1 2 6147 -8 212 0 36 0 chrX 33307968 33307996 -143666144 + (TA)n Simple_repeat Simple_repeat 1 29 0 183 256 0 0 chrX 33309102 33309145 -143664995 + MIR SINE MIR 216 258 -4 492 324 91 29 chrX 33309677 33310017 -143664123 + L2 LINE L2 2912 3272 0 2271 89 14 7 chrX 33310912 33311204 -143662936 - AluSc SINE Alu -15 294 1 2192 77 73 0 chrX 33311477 33311764 -143662376 - AluSx SINE Alu -4 308 1 27 0 0 0 chrX 33314287 33314314 -143659826 + AT_rich Low_complexity Low_complexity 1 27 0 1143 206 192 114 chrX 33314535 33315333 -143658807 - L2 LINE L2 -18 3295 2273 288 248 197 8 chrX 33315333 33315450 -143658690 - L1ME3A LINE L1 -4 6166 6028 1143 206 192 114 chrX 33315450 33315715 -143658425 - L2 LINE L2 -1040 2273 2030 2350 85 3 3 chrX 33315931 33316225 -143657915 - AluSp SINE Alu -19 294 1 198 347 13 0 chrX 33316267 33316342 -143657798 - L2 LINE L2 -217 3055 2980 1478 213 68 43 chrX 33316352 33316746 -143657394 - MLT1C LTR MaLR 0 467 64 247 164 229 0 chrX 33316793 33316854 -143657286 - MLT1C LTR MaLR -385 82 8 801 248 39 19 chrX 33316893 33317099 -143657041 - MER63A DNA MER1_type 0 210 1 210 348 0 77 chrX 33317151 33317224 -143656916 - L2 LINE L2 -467 2847 2791 1799 167 3 13 chrX 33317224 33317524 -143656616 - AluJb SINE Alu -15 297 1 210 348 0 77 chrX 33317524 33317605 -143656535 - L2 LINE L2 -523 2791 2705 2156 114 149 11 chrX 33317787 33318163 -143655977 + MSTA LTR MaLR 1 428 0 280 241 172 0 chrX 33318223 33318339 -143655801 - L2 LINE L2 -3 3310 3175 1991 208 96 47 chrX 33318624 33319219 -143654921 + MLT1E3 LTR MaLR 1 624 0 2270 103 0 7 chrX 33320225 33320526 -143653614 - AluSx SINE Alu -12 300 2 7158 46 17 35 chrX 33320807 33322355 -143651785 + SVA Other Other 4 1408 0 2337 90 0 7 chrX 33322612 33322912 -143651228 - AluSc SINE Alu -11 298 1 252 83 28 0 chrX 33323376 33323412 -143650728 + Alu SINE Alu 1 37 -265 1209 157 66 138 chrX 33323512 33323817 -143650323 - LTR8 LTR ERV1 -435 256 1 215 297 54 40 chrX 33323824 33323898 -143650242 + L2 LINE L2 3189 3263 -9 24 67 0 0 chrX 33324231 33324276 -143649864 + AT_rich Low_complexity Low_complexity 1 45 0 357 93 0 0 chrX 33324684 33324738 -143649402 + (TG)n Simple_repeat Simple_repeat 2 55 0 1204 179 119 112 chrX 33325723 33326269 -143647871 - MER34C LTR ERV1 0 585 36 233 287 19 83 chrX 33326667 33326775 -143647365 - MLT2E LTR ERVL -490 138 38 338 209 0 0 chrX 33327135 33327202 -143646938 - MER92C LTR ERV1 -4 550 484 356 251 30 84 chrX 33327294 33327461 -143646679 - MER92C LTR ERV1 -386 168 11 1409 193 143 48 chrX 33327587 33328007 -143646133 + MER34C LTR ERV1 1 460 -125 297 160 47 6 chrX 33328007 33328176 -143645964 + (TA)n Simple_repeat Simple_repeat 1 176 0 629 46 73 0 chrX 33328278 33328387 -143645753 - MER41B LTR ERV1 -518 117 1 310 197 0 15 chrX 33328475 33328541 -143645599 - L1M4 LINE L1 -870 5276 5212 228 220 0 0 chrX 33328746 33328796 -143645344 + L1M4 LINE L1 3627 3676 -2470 249 108 0 0 chrX 33328799 33328836 -143645304 + (CA)n Simple_repeat Simple_repeat 2 38 0 489 321 19 41 chrX 33328883 33329056 -143645084 + L1M4 LINE L1 3754 3920 -2226 2077 107 4 4 chrX 33329056 33329337 -143644803 + AluSx SINE Alu 3 283 -29 489 321 19 41 chrX 33329337 33329431 -143644709 + L1M4 LINE L1 3920 4015 -2131 5684 102 40 28 chrX 33329708 33329737 -143644403 - Tigger3b DNA MER2_type -1799 1229 1202 2126 100 0 0 chrX 33329737 33330016 -143644124 + AluSg SINE Alu 1 279 -31 414 0 0 0 chrX 33330016 33330062 -143644078 + (CA)n Simple_repeat Simple_repeat 1 46 0 5684 102 40 28 chrX 33330062 33330499 -143643641 - Tigger3b DNA MER2_type -1826 1202 771 1792 169 10 20 chrX 33330499 33330795 -143643345 + AluJo SINE Alu 3 295 -17 2291 81 0 3 chrX 33330795 33331093 -143643047 + AluSg SINE Alu 1 297 -13 5684 102 40 28 chrX 33331093 33331608 -143642532 - Tigger3b DNA MER2_type -2256 772 234 236 216 40 54 chrX 33333086 33333160 -143640980 + L2 LINE L2 3199 3271 -1 204 125 0 0 chrX 33334977 33335009 -143639131 + (T)n Simple_repeat Simple_repeat 1 32 0 451 266 20 110 chrX 33336048 33336272 -143637868 - MIR SINE MIR -15 247 37 21 0 0 0 chrX 33336551 33336572 -143637568 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 33336617 33336640 -143637500 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chrX 33336790 33336816 -143637324 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2135 115 0 3 chrX 33336818 33337106 -143637034 - AluSg SINE Alu -23 287 1 589 131 61 0 chrX 33337108 33337207 -143636933 - L1PA7 LINE L1 -8 6146 6042 1072 54 15 0 chrX 33337244 33337374 -143636766 - AluYb8 SINE Alu -186 132 1 745 124 8 0 chrX 33337374 33337503 -143636637 - L1PA8 LINE L1 -104 6068 5939 2583 87 0 0 chrX 33337577 33337889 -143636251 - AluSx SINE Alu 0 312 1 207 246 140 18 chrX 33338416 33338473 -143635667 + L2 LINE L2 3196 3259 -54 2383 137 99 9 chrX 33338498 33338921 -143635219 - LOR1b LTR ERV1 0 461 1 24 0 0 0 chrX 33339333 33339357 -143634783 + AT_rich Low_complexity Low_complexity 1 24 0 499 122 0 0 chrX 33339357 33339431 -143634709 - MER58 DNA MER1_type 0 2420 2347 1891 128 0 18 chrX 33339456 33339737 -143634403 + AluSx SINE Alu 1 276 -36 1030 68 34 17 chrX 33339741 33339918 -143634222 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 246 24 0 chrX 33339932 33340058 -143634082 + GA-rich Low_complexity Low_complexity 3 131 0 194 61 0 30 chrX 33340058 33340091 -143634049 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 462 195 0 0 chrX 33340098 33340175 -143633965 - MER58A DNA MER1_type -26 81 5 520 233 134 36 chrX 33340665 33340888 -143633252 + LTR37A LTR ERV1 1 245 -181 401 209 0 11 chrX 33340953 33341044 -143633096 + MER31-int LTR ERV1 4380 4469 -467 396 175 78 0 chrX 33341749 33341828 -143632312 - MER34C LTR ERV1 0 585 467 2094 102 64 7 chrX 33341828 33342123 -143632017 + AluSx SINE Alu 1 312 0 396 175 78 0 chrX 33342123 33342145 -143631995 - MER34C LTR ERV1 -118 467 448 2790 140 45 2 chrX 33342147 33342612 -143631528 + MER31A LTR ERV1 1 485 0 1681 157 44 4 chrX 33342620 33342894 -143631246 + AluJo SINE Alu 1 285 -27 520 76 47 35 chrX 33342894 33343065 -143631075 + (TA)n Simple_repeat Simple_repeat 1 173 0 24 0 0 0 chrX 33343080 33343104 -143631036 + AT_rich Low_complexity Low_complexity 1 24 0 485 90 62 29 chrX 33343120 33343887 -143630253 + (TA)n Simple_repeat Simple_repeat 1 792 0 2490 128 23 0 chrX 33344468 33344860 -143629280 - MSTA LTR MaLR -27 401 1 5317 229 86 25 chrX 33344860 33346286 -143627854 + MSTD-int LTR MaLR 223 1735 0 1928 157 93 6 chrX 33346286 33346650 -143627490 + MSTD LTR MaLR 1 396 0 379 353 24 0 chrX 33347312 33347479 -143626661 - MER117 DNA MER1_type -26 171 1 2131 116 0 26 chrX 33350419 33350708 -143623432 + AluSx SINE Alu 1 296 -16 180 97 0 0 chrX 33350708 33350739 -143623401 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 189 107 0 0 chrX 33350742 33350770 -143623370 + (TA)n Simple_repeat Simple_repeat 1 28 0 2131 116 0 26 chrX 33350770 33350786 -143623354 + AluSx SINE Alu 298 302 -10 1840 151 46 6 chrX 33350912 33351236 -143622904 - MER1B DNA MER1_type 0 337 1 1824 146 9 27 chrX 33351236 33351564 -143622576 - MLT2C1 LTR ERVL -74 323 2 2002 160 75 23 chrX 33351565 33352008 -143622132 - ERVL-C1 LTR ERVL -8 5756 5291 364 219 10 31 chrX 33352109 33352205 -143621935 + MER34 LTR ERV1 448 541 -1 624 285 43 62 chrX 33352205 33352315 -143621825 - L2 LINE L2 -170 3143 3032 2415 100 0 0 chrX 33352315 33352625 -143621515 - AluSp SINE Alu -3 310 1 624 285 43 62 chrX 33352625 33352868 -143621272 - L2 LINE L2 -281 3032 2800 983 189 27 5 chrX 33352868 33353053 -143621087 - MER5A DNA MER1_type 0 189 1 624 285 43 62 chrX 33353053 33353123 -143621017 - L2 LINE L2 -513 2800 2730 825 232 90 86 chrX 33353151 33353698 -143620442 + MER34C LTR ERV1 37 585 0 1720 186 23 57 chrX 33353830 33354307 -143619833 - MER31B LTR ERV1 0 661 12 189 0 0 0 chrX 33354443 33354464 -143619676 + (CAATT)n Simple_repeat Simple_repeat 4 24 0 1535 169 74 67 chrX 33354558 33355003 -143619137 - LTR8A LTR ERV1 0 727 280 1593 151 23 4 chrX 33355122 33355381 -143618759 - ERVL-C1 LTR ERVL -700 5064 4801 553 226 0 16 chrX 33355381 33355505 -143618635 - MLT1D-int LTR MaLR -645 726 605 2874 200 12 0 chrX 33355581 33356180 -143617960 - MLT1D-int LTR MaLR -765 606 1 1306 212 157 20 chrX 33356182 33356621 -143617519 - MLT1D LTR MaLR -2 503 5 342 256 45 19 chrX 33356622 33356778 -143617362 - L1MEc LINE L1 -3802 2413 2254 243 324 38 21 chrX 33356789 33357162 -143616978 - L1MEc LINE L1 -4144 2252 1874 298 301 153 5 chrX 33357186 33357382 -143616758 - L1MEc LINE L1 -4585 1811 1587 1897 137 25 0 chrX 33357487 33357772 -143616368 - AluJo SINE Alu -20 292 1 323 292 84 47 chrX 33357837 33358111 -143616029 + MLT1J LTR MaLR 228 511 0 933 260 30 7 chrX 33358236 33358536 -143615604 + L1MC4 LINE L1 6762 7068 -974 878 271 14 0 chrX 33358615 33358836 -143615304 - LTR16A LTR ERVL -24 426 203 1634 136 5 136 chrX 33358837 33359235 -143614905 + MER7A DNA MER2_type 2 345 -1 230 344 64 19 chrX 33359291 33359448 -143614692 - LTR16A1 LTR ERVL -293 164 1 459 259 20 30 chrX 33359456 33359657 -143614483 + L1MC4 LINE L1 7113 7311 -731 529 185 60 46 chrX 33359739 33359890 -143614250 + L1MC5 LINE L1 7311 7463 -498 1801 162 0 23 chrX 33359946 33360249 -143613891 - AluJo SINE Alu -16 296 1 372 127 0 0 chrX 33360492 33360547 -143613593 - AluSp SINE Alu -106 197 143 529 213 115 55 chrX 33360642 33360825 -143613315 + L2 LINE L2 3118 3311 -2 2223 101 0 7 chrX 33361133 33361430 -143612710 - AluSx SINE Alu -17 295 1 674 147 0 120 chrX 33361508 33361635 -143612505 - FLAM_A SINE Alu -170 132 24 2217 109 0 7 chrX 33361635 33361938 -143612202 + AluSx SINE Alu 1 301 -11 674 147 0 120 chrX 33361938 33361960 -143612180 - FLAM_A SINE Alu -278 24 1 1740 118 0 0 chrX 33362635 33362872 -143611268 + AluSx SINE Alu 1 237 -75 811 215 86 76 chrX 33363216 33363395 -143610745 - L1MC5 LINE L1 -44 7917 7741 650 39 0 0 chrX 33363395 33363473 -143610667 + MADE1 DNA Mariner 1 78 -2 811 215 86 76 chrX 33363473 33363712 -143610428 - L1MC5 LINE L1 -220 7741 7495 1567 175 4 8 chrX 33363822 33364074 -143610066 - AluJo SINE Alu -12 300 50 938 112 8 15 chrX 33364077 33364211 -143609929 - AluJo/FLAM SINE Alu -179 133 1 275 299 0 0 chrX 33365358 33365425 -143608715 - L2 LINE L2 -1 3271 3205 182 319 28 99 chrX 33365503 33365644 -143608496 - L2 LINE L2 -242 3030 2900 356 265 188 33 chrX 33365846 33366027 -143608113 - L1MC4a LINE L1 -1862 5946 5738 5279 138 48 3 chrX 33366276 33367384 -143606756 + L1PA16 LINE L1 5004 6157 -9 351 195 0 35 chrX 33367392 33367479 -143606661 + L1MEd LINE L1 977 1060 -5059 254 296 112 7 chrX 33367484 33367636 -143606504 + L1ME3A LINE L1 5784 5951 -219 2413 87 0 3 chrX 33368060 33368370 -143605770 - AluSg SINE Alu -1 309 1 695 194 0 0 chrX 33368936 33369065 -143605075 - MLT1B LTR MaLR 0 390 262 1792 151 53 7 chrX 33369558 33369842 -143604298 - AluJo SINE Alu -15 297 1 1414 88 72 34 chrX 33371156 33371234 -143602906 - L1MA8 LINE L1 -5 6286 6212 8740 52 2 0 chrX 33371234 33372301 -143601839 - MER11C LTR ERVK -2 1069 1 1414 88 72 34 chrX 33372301 33372485 -143601655 - L1MA8 LINE L1 -79 6212 6014 283 328 17 17 chrX 33372529 33372645 -143601495 + L2 LINE L2 2404 2519 -795 243 161 0 54 chrX 33372635 33372691 -143601449 - L2 LINE L2 -677 2637 2585 * 849 260 0 35 chrX 33372714 33372941 -143601199 + MIR SINE MIR 28 246 -16 468 244 122 0 chrX 33372941 33373072 -143601068 + L2 LINE L2 3164 3310 -3 2152 100 0 0 chrX 33373390 33373712 -143600428 + AluSx SINE Alu 1 322 0 542 252 34 113 chrX 33373863 33374129 -143600011 - L2 LINE L2 -12 3260 3016 3669 167 105 21 chrX 33374449 33375367 -143598773 - L1MB7 LINE L1 0 6184 5179 802 158 0 16 chrX 33375367 33375494 -143598646 - FRAM SINE Alu -11 165 41 1167 175 66 4 chrX 33375496 33375781 -143598359 - L1PA16 LINE L1 0 6163 5837 664 114 0 0 chrX 33375782 33375870 -143598270 - FLAM SINE Alu -21 122 38 3068 212 28 41 chrX 33375870 33376628 -143597512 - L1MB7 LINE L1 -961 5185 4438 344 268 159 43 chrX 33376767 33376905 -143597235 + L3 LINE CR1 1321 1474 -103 238 343 22 30 chrX 33376947 33377081 -143597059 + MER5A DNA MER1_type 31 163 -26 212 302 0 48 chrX 33377886 33377949 -143596191 - L3 LINE CR1 -932 645 586 670 241 98 20 chrX 33378451 33378654 -143595486 + L1M4b LINE L1 11 229 -6630 3377 198 53 41 chrX 33378739 33380076 -143594064 + L1PA8 LINE L1 4822 6172 0 1989 239 102 9 chrX 33380078 33380461 -143593679 + L1MD2 LINE L1 5551 6000 -359 261 0 0 0 chrX 33380461 33380490 -143593650 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1989 239 102 9 chrX 33380490 33380646 -143593494 + L1MD2 LINE L1 6000 6140 -219 3927 185 69 30 chrX 33380722 33381059 -143593081 + L1MB7 LINE L1 5188 5510 -674 2498 73 3 0 chrX 33381059 33381360 -143592780 - AluSp SINE Alu -11 302 1 3927 185 69 30 chrX 33381360 33381985 -143592155 + L1MB7 LINE L1 5510 6180 -4 2419 98 0 0 chrX 33385171 33385478 -143588662 + AluSx SINE Alu 1 307 -5 2137 100 3 55 chrX 33386565 33386876 -143587264 + AluSx SINE Alu 1 295 -17 297 280 160 29 chrX 33388597 33388772 -143585368 + MIR3 SINE MIR 2 199 -9 2510 74 0 0 chrX 33389310 33389607 -143584533 - AluSg SINE Alu -13 297 1 4034 175 87 5 chrX 33390160 33390941 -143583199 + L1MD2 LINE L1 5514 6358 -1 1132 166 20 20 chrX 33391022 33391221 -143582919 + AluJo SINE Alu 84 282 -30 351 0 0 0 chrX 33391224 33391263 -143582877 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1221 207 58 126 chrX 33391493 33391988 -143582152 + L1M4 LINE L1 3222 3668 -2478 217 287 49 57 chrX 33392691 33392813 -143581327 - MIR SINE MIR -122 140 20 4702 141 45 90 chrX 33393241 33394209 -143579931 - MER21A LTR ERV1 -6 925 1 531 0 0 0 chrX 33394555 33394614 -143579526 + (CA)n Simple_repeat Simple_repeat 2 60 0 240 86 0 0 chrX 33394618 33394653 -143579487 + (TC)n Simple_repeat Simple_repeat 1 35 0 305 354 67 20 chrX 33395040 33395235 -143578905 + MIR SINE MIR 9 212 -50 252 0 0 0 chrX 33396292 33396320 -143577820 + (TG)n Simple_repeat Simple_repeat 2 29 0 263 239 0 45 chrX 33397218 33397243 -143576897 + MER3 DNA MER1_type 27 48 -161 406 203 0 0 chrX 33397243 33397317 -143576823 - MER3 DNA MER1_type -1 208 135 3102 143 105 140 chrX 33397317 33397708 -143576432 + L1MC3 LINE L1 6705 7108 -677 294 207 0 117 chrX 33397708 33397819 -143576321 + MLT1F1 LTR MaLR 25 122 -445 3102 143 105 140 chrX 33397819 33398107 -143576033 + L1MC3 LINE L1 7108 7458 -327 2387 56 0 30 chrX 33398107 33398409 -143575731 + AluY SINE Alu 1 293 -18 3102 143 105 140 chrX 33398409 33398563 -143575577 + L1MC3 LINE L1 7458 7616 -169 226 316 76 0 chrX 33398857 33398936 -143575204 + MIR SINE MIR 165 249 -13 261 119 0 0 chrX 33399152 33399194 -143574946 + (CA)n Simple_repeat Simple_repeat 1 42 0 1047 128 7 0 chrX 33400240 33400388 -143573752 - AluJb SINE Alu -6 306 158 2406 126 10 42 chrX 33400438 33400493 -143573647 - L1MB2 LINE L1 0 6171 6116 2428 77 0 3 chrX 33400493 33400790 -143573350 - AluY SINE Alu -15 296 1 2406 126 10 42 chrX 33400790 33401140 -143573000 - L1MB2 LINE L1 -55 6116 5779 2041 100 18 7 chrX 33401143 33401448 -143572692 - AluSp SINE Alu 0 308 1 1015 178 11 11 chrX 33402050 33402241 -143571899 + MER3 DNA MER1_type 19 209 0 278 224 0 0 chrX 33402199 33402248 -143571892 - MER3 DNA MER1_type -120 89 41 * 554 305 64 5 chrX 33402377 33402564 -143571576 + MIR SINE MIR 17 214 -48 1325 174 0 9 chrX 33403352 33403570 -143570570 + AluJo SINE Alu 86 301 -11 353 139 62 5 chrX 33403850 33403929 -143570211 + Alu SINE Alu 237 302 0 284 106 21 0 chrX 33404043 33404090 -143570050 - L1MB4 LINE L1 0 6180 6133 475 62 0 0 chrX 33404092 33404156 -143569984 - Alu SINE Alu -4 308 245 946 169 17 34 chrX 33404762 33404939 -143569201 + FRAM SINE Alu 1 174 -2 255 247 108 88 chrX 33404984 33405178 -143568962 + L1ME3 LINE L1 5918 6115 -47 296 213 2 25 chrX 33405198 33405278 -143568862 - MLT1L LTR MaLR 0 615 431 238 179 0 0 chrX 33405459 33405498 -143568642 - LTR67 LTR ERVL -424 133 95 2300 83 7 0 chrX 33405708 33405997 -143568143 - AluSp SINE Alu -22 291 1 2419 97 3 0 chrX 33406008 33406319 -143567821 - AluSq SINE Alu -1 312 1 2384 99 3 0 chrX 33406320 33406624 -143567516 - AluSq SINE Alu -8 305 1 25 51 0 0 chrX 33408248 33408287 -143565853 + AT_rich Low_complexity Low_complexity 1 39 0 44193 30 22 1 chrX 33408290 33414318 -143559822 - L1PA3 LINE L1 0 6155 1 274 216 14 0 chrX 33414318 33414392 -143559748 - MER33 DNA MER1_type -156 207 133 2379 110 0 0 chrX 33414392 33414701 -143559439 + AluSx SINE Alu 2 310 -2 469 159 232 1 chrX 33414717 33414813 -143559327 - MER33 DNA MER1_type -250 74 1 446 134 98 0 chrX 33415193 33415275 -143558865 - L1MB7 LINE L1 0 6184 6095 2017 124 35 0 chrX 33415284 33415567 -143558573 - AluSx SINE Alu -19 293 1 849 181 85 16 chrX 33415578 33415766 -143558374 - L1MB4 LINE L1 0 6180 5980 1791 164 13 20 chrX 33416259 33416563 -143557577 - AluJo SINE Alu -10 302 1 1592 138 12 12 chrX 33417225 33417478 -143556662 + AluJb SINE Alu 1 253 -59 2105 131 3 3 chrX 33417818 33418130 -143556010 - AluJb SINE Alu 0 312 1 248 123 55 0 chrX 33418625 33418698 -143555442 + (TAA)n Simple_repeat Simple_repeat 3 79 0 239 276 0 0 chrX 33419176 33419234 -143554906 + A-rich Low_complexity Low_complexity 1 58 0 338 21 0 42 chrX 33420557 33420605 -143553535 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 353 229 67 29 chrX 33421358 33421463 -143552677 + MIR3 SINE MIR 88 196 -12 315 345 84 51 chrX 33421956 33422252 -143551888 - L2 LINE L2 -5 3267 2962 264 30 0 0 chrX 33423568 33423601 -143550539 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 557 258 157 0 chrX 33424108 33424267 -143549873 - MER5A DNA MER1_type -3 186 3 2131 130 0 3 chrX 33425023 33425322 -143548818 - AluSx SINE Alu -14 298 1 1755 164 66 11 chrX 33425445 33425811 -143548329 + MER58D DNA MER1_type 1 386 0 23 33 0 0 chrX 33425972 33426002 -143548138 + AT_rich Low_complexity Low_complexity 1 30 0 227 256 47 12 chrX 33427137 33427223 -143546917 + MIR3 SINE MIR 95 183 -25 924 229 57 0 chrX 33427724 33427951 -143546189 - MIR SINE MIR -21 241 2 7295 203 81 29 chrX 33428356 33430097 -143544043 - L1MD2 LINE L1 -470 5889 3961 2372 99 0 0 chrX 33430097 33430400 -143543740 + AluY SINE Alu 3 305 -6 7295 203 81 29 chrX 33430400 33431293 -143542847 - L1MD2 LINE L1 -2398 3961 3115 567 236 113 57 chrX 33432369 33432598 -143541542 + MIR SINE MIR 20 261 -1 969 219 21 39 chrX 33432858 33433091 -143541049 - MER106A DNA MER1_type -1 235 7 899 171 0 151 chrX 33433105 33433363 -143540777 + MER20 DNA MER1_type 1 219 0 22 35 0 0 chrX 33435210 33435239 -143538901 + AT_rich Low_complexity Low_complexity 1 29 0 2430 86 0 19 chrX 33435704 33436018 -143538122 + AluSx SINE Alu 1 308 -4 405 0 0 0 chrX 33436294 33436339 -143537801 + (T)n Simple_repeat Simple_repeat 1 45 0 1317 130 128 185 chrX 33436903 33437417 -143536723 - MER31A LTR ERV1 0 485 1 229 233 63 107 chrX 33437417 33437623 -143536517 + L1MC4 LINE L1 7829 8025 -17 380 275 192 6 chrX 33438127 33438294 -143535846 - MIR SINE MIR -18 244 47 1486 268 70 78 chrX 33438531 33438982 -143535158 - MLT1G LTR MaLR -88 507 20 329 259 12 0 chrX 33439155 33439240 -143534900 + L2 LINE L2 3185 3270 -2 202 73 49 0 chrX 33441251 33441292 -143532848 + A-rich Low_complexity Low_complexity 4 46 0 203 256 0 0 chrX 33441629 33441672 -143532468 + (TG)n Simple_repeat Simple_repeat 2 44 0 305 315 11 0 chrX 33442001 33442093 -143532047 - L2 LINE L2 0 3313 3221 1684 152 34 14 chrX 33442342 33442638 -143531502 - AluJo SINE Alu -10 302 1 1897 151 143 8 chrX 33442718 33443095 -143531045 - MSTA LTR MaLR 0 428 1 2326 98 0 0 chrX 33443101 33443398 -143530742 + AluSx SINE Alu 1 297 -15 417 159 0 0 chrX 33443448 33443517 -143530623 - MLT1E2 LTR MaLR -2 624 556 819 154 23 0 chrX 33443521 33443651 -143530489 - AluJb SINE Alu -179 133 1 1012 197 325 38 chrX 33443651 33443941 -143530199 - MLT1E2 LTR MaLR -52 574 368 2294 111 0 13 chrX 33443941 33444248 -143529892 - AluSx SINE Alu -9 303 1 1012 197 325 38 chrX 33444248 33444403 -143529737 - MLT1E2 LTR MaLR -258 368 1 316 208 0 0 chrX 33444732 33444785 -143529355 + L2 LINE L2 3242 3294 -19 2504 210 157 39 chrX 33445195 33445933 -143528207 - MER21B LTR ERV1 -27 836 12 620 227 20 7 chrX 33445955 33446105 -143528035 - MIR SINE MIR -80 182 31 1787 160 11 3 chrX 33449216 33449537 -143524603 - AluJb SINE Alu 0 323 1 408 211 55 0 chrX 33449624 33449733 -143524407 - L1ME3A LINE L1 -10 6094 5980 1263 141 6 0 chrX 33449739 33449916 -143524224 + AluJb SINE Alu 1 178 -134 2144 208 51 12 chrX 33449957 33450717 -143523423 - L1ME3A LINE L1 -143 5961 5106 2260 118 0 0 chrX 33450717 33451014 -143523126 - AluSx SINE Alu -15 297 1 2144 208 51 12 chrX 33451014 33451169 -143522971 - L1ME3A LINE L1 -998 5106 4959 304 230 86 58 chrX 33451590 33451729 -143522411 - L1ME3A LINE L1 -5887 183 41 946 238 102 85 chrX 33452335 33453038 -143521102 + HAL1 LINE L1 968 1682 -825 1557 146 51 67 chrX 33453322 33453637 -143520503 - AluJb SINE Alu -2 310 1 267 103 0 0 chrX 33453997 33454036 -143520104 + (TA)n Simple_repeat Simple_repeat 2 40 0 2493 77 0 0 chrX 33454335 33454633 -143519507 + AluSc SINE Alu 1 298 -11 1239 151 0 47 chrX 33455067 33455164 -143518976 + MER20 DNA MER1_type 18 118 -101 2512 120 6 6 chrX 33455164 33455530 -143518610 + MER47A DNA MER2_type 1 366 0 1239 151 0 47 chrX 33455530 33455644 -143518496 + MER20 DNA MER1_type 118 219 0 2612 65 3 0 chrX 33456721 33457030 -143517110 - AluSg SINE Alu 0 310 1 232 221 156 0 chrX 33457030 33457107 -143517033 + MIR SINE MIR 114 202 -60 228 300 70 0 chrX 33457526 33457626 -143516514 - MIR SINE MIR -69 139 33 2112 121 7 0 chrX 33459640 33459930 -143514210 - AluSx SINE Alu -20 292 1 2191 102 0 3 chrX 33459939 33460257 -143513883 - AluSg SINE Alu 0 317 1 2280 127 0 0 chrX 33460730 33461038 -143513102 + AluSq SINE Alu 1 308 -5 2199 108 0 3 chrX 33463507 33463802 -143510338 - AluSg SINE Alu -16 294 1 1777 67 0 9 chrX 33464455 33464680 -143509460 - AluSg/x SINE Alu 0 310 88 430 160 0 0 chrX 33464855 33464930 -143509210 + MER116 DNA Mariner 1 75 -5 2052 152 3 0 chrX 33464944 33465241 -143508899 + AluJb SINE Alu 1 298 -14 201 74 0 0 chrX 33465620 33465647 -143508493 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2177 92 0 7 chrX 33465786 33466119 -143508021 - AluSg SINE Alu 0 331 1 402 287 35 46 chrX 33467056 33467230 -143506910 - MER5B DNA MER1_type 0 178 7 1132 188 9 39 chrX 33470345 33470574 -143503566 + MER58A DNA MER1_type 3 224 0 2218 94 0 30 chrX 33470609 33470906 -143503234 + AluSx SINE Alu 1 288 -24 28 29 0 0 chrX 33471484 33471519 -143502621 + AT_rich Low_complexity Low_complexity 1 35 0 2242 120 0 3 chrX 33472712 33473012 -143501128 - AluSx SINE Alu -13 299 1 2359 124 122 20 chrX 33473048 33473450 -143500690 - LTR47B LTR ERVL 0 443 1 2363 84 7 0 chrX 33473524 33473820 -143500320 - AluSx SINE Alu -14 298 1 6606 204 93 26 chrX 33473829 33475131 -143499009 + L1MDa LINE L1 18 1232 -5308 2160 117 13 0 chrX 33475131 33475430 -143498710 - AluSx SINE Alu -9 303 1 6606 204 93 26 chrX 33475430 33477013 -143497127 + L1MDa LINE L1 1232 3624 -2916 1982 138 26 0 chrX 33477013 33477318 -143496822 + AluSq SINE Alu 1 313 0 6606 204 93 26 chrX 33477318 33477612 -143496528 + L1MDa LINE L1 3624 3897 -2643 2717 72 3 8 chrX 33477614 33477976 -143496164 + L1PA8 LINE L1 5813 6172 0 2260 95 0 0 chrX 33478001 33478306 -143495834 + AluSx SINE Alu 1 305 -7 4167 172 40 25 chrX 33478306 33479143 -143494997 + L1MD2 LINE L1 5474 6326 -33 1479 139 46 4 chrX 33479143 33479381 -143494759 - AluJo SINE Alu -64 248 1 4167 172 40 25 chrX 33479381 33479416 -143494724 + L1MD2 LINE L1 6326 6359 0 2097 95 0 3 chrX 33480112 33480395 -143493745 - AluSx SINE Alu -16 296 15 2360 82 3 0 chrX 33482641 33482944 -143491196 + AluSp SINE Alu 1 304 -9 1892 115 11 7 chrX 33483631 33483917 -143490223 + AluSx SINE Alu 1 287 -25 2131 119 7 0 chrX 33484086 33484396 -143489744 + AluSx SINE Alu 1 312 0 2289 80 10 0 chrX 33485121 33485420 -143488720 - AluSp SINE Alu -11 302 1 2678 112 40 5 chrX 33485647 33486077 -143488063 + L1MA4A LINE L1 5854 6298 -5 437 264 146 47 chrX 33487208 33487652 -143486488 + L1MC4a LINE L1 5444 5931 -1877 2292 76 3 0 chrX 33487781 33488072 -143486068 + AluSp SINE Alu 1 292 -21 2302 79 0 0 chrX 33488109 33488400 -143485740 - AluSg SINE Alu -19 291 1 23 0 0 0 chrX 33488401 33488424 -143485716 + AT_rich Low_complexity Low_complexity 1 23 0 2173 114 0 0 chrX 33488424 33488723 -143485417 - AluSx SINE Alu -13 299 1 256 328 12 9 chrX 33488724 33488831 -143485309 - MIR3 SINE MIR -41 167 60 2363 70 0 7 chrX 33489318 33489617 -143484523 + AluSc SINE Alu 1 297 -12 1679 172 0 23 chrX 33489670 33489973 -143484167 - AluJo SINE Alu -16 296 1 649 207 108 64 chrX 33490538 33490610 -143483530 + MLT1L LTR MaLR 62 129 -486 792 192 0 101 chrX 33490610 33490808 -143483332 + MER5B DNA MER1_type 1 178 0 649 207 108 64 chrX 33490808 33490938 -143483202 + MLT1L LTR MaLR 129 273 -342 1174 157 35 101 chrX 33490950 33491236 -143482904 + AluJb SINE Alu 1 267 -45 865 195 6 12 chrX 33491238 33491402 -143482738 + AluJo/FRAM SINE Alu 140 302 0 448 250 125 0 chrX 33491485 33491613 -143482527 + MLT1L LTR MaLR 335 478 -137 369 252 118 31 chrX 33491962 33492089 -143482051 + MIR SINE MIR 20 157 -105 197 250 62 0 chrX 33492087 33492135 -143482005 + L2 LINE L2 3201 3251 -21 * 189 74 0 0 chrX 33492525 33492552 -143481588 + (A)n Simple_repeat Simple_repeat 1 27 0 330 176 10 39 chrX 33493450 33493552 -143480588 + GA-rich Low_complexity Low_complexity 6 104 0 262 293 109 7 chrX 33493828 33493975 -143480165 + L2 LINE L2 1204 1365 -1949 21 36 0 0 chrX 33494732 33494760 -143479380 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 33495197 33495232 -143478908 + GC_rich Low_complexity Low_complexity 1 35 0 258 175 0 70 chrX 33496456 33496538 -143477602 + MIR SINE MIR 102 174 -88 305 111 89 0 chrX 33496539 33496584 -143477556 + MLT1I LTR MaLR 354 402 -7 188 272 228 20 chrX 33496983 33497237 -143476903 + L2 LINE L2 852 1158 -2156 353 106 0 0 chrX 33497271 33497318 -143476822 + Alu SINE Alu 2 48 -254 341 256 142 61 chrX 33497340 33497586 -143476554 + L2 LINE L2 1217 1482 -1832 1591 136 28 35 chrX 33497680 33497967 -143476173 - AluJb SINE Alu -27 285 1 290 291 165 19 chrX 33498188 33498394 -143475746 + MLT1H LTR MaLR 119 354 -195 236 227 350 21 chrX 33498443 33498496 -143475644 - MER5A DNA MER1_type 0 189 155 1913 146 0 10 chrX 33498496 33498804 -143475336 + AluJb SINE Alu 1 305 -7 236 227 350 21 chrX 33498804 33498847 -143475293 - MER5A DNA MER1_type -34 155 61 1138 117 174 103 chrX 33498874 33499040 -143475100 - AluJo SINE Alu 0 302 106 2403 67 0 0 chrX 33499040 33499337 -143474803 + AluSg SINE Alu 1 297 -13 1138 117 174 103 chrX 33499337 33499452 -143474688 - AluJo SINE Alu -196 106 1 391 176 29 0 chrX 33499452 33499520 -143474620 - MER5A DNA MER1_type -111 78 9 211 189 0 0 chrX 33500279 33500316 -143473824 + CT-rich Low_complexity Low_complexity 2 38 0 267 261 92 0 chrX 33500346 33500411 -143473729 - MER91A DNA MER1_type 0 196 126 317 312 46 9 chrX 33500436 33500545 -143473595 - MER91A DNA MER1_type -42 154 42 299 325 19 34 chrX 33500546 33500668 -143473472 + L2 LINE L2 1709 1828 -1486 4766 76 40 9 chrX 33500668 33500902 -143473238 + PABL_B LTR ERV1 1 226 -441 2172 92 14 0 chrX 33500902 33501195 -143472945 + AluSx SINE Alu 3 299 -13 4766 76 40 9 chrX 33501195 33501607 -143472533 + PABL_B LTR ERV1 226 667 0 299 325 19 34 chrX 33501607 33501690 -143472450 + L2 LINE L2 1828 1911 -1403 810 210 0 34 chrX 33501712 33501888 -143472252 - AluJo SINE Alu -140 172 3 258 197 49 0 chrX 33501890 33501951 -143472189 + L2 LINE L2 1907 1970 -1344 251 330 64 0 chrX 33501980 33502089 -143472051 + L2 LINE L2 1957 2072 -1242 541 203 70 63 chrX 33502151 33502309 -143471831 + MIR SINE MIR 31 189 -73 405 0 0 0 chrX 33502309 33502354 -143471786 + (TA)n Simple_repeat Simple_repeat 2 46 0 1768 141 121 10 chrX 33502355 33502668 -143471472 + MER7A DNA MER2_type 1 346 0 347 0 23 0 chrX 33502669 33502712 -143471428 + (TG)n Simple_repeat Simple_repeat 2 45 0 714 291 221 22 chrX 33502832 33503206 -143470934 + L2 LINE L2 2227 2704 -610 1748 158 24 0 chrX 33503206 33503498 -143470642 - AluJb SINE Alu -13 299 1 714 291 221 22 chrX 33503498 33503567 -143470573 + L2 LINE L2 2704 2758 -556 282 270 0 0 chrX 33503631 33503694 -143470446 + L2 LINE L2 3249 3311 -2 336 48 0 0 chrX 33504014 33504056 -143470084 + (TC)n Simple_repeat Simple_repeat 2 43 0 1620 189 0 0 chrX 33504056 33504336 -143469804 - AluJb SINE Alu -32 280 1 360 259 67 37 chrX 33504504 33504639 -143469501 - L2 LINE L2 -4 3309 3171 2012 92 25 0 chrX 33504737 33505019 -143469121 + AluSx SINE Alu 1 289 -23 413 62 15 0 chrX 33505035 33505100 -143469040 + (TC)n Simple_repeat Simple_repeat 2 67 0 303 355 8 8 chrX 33505227 33505348 -143468792 - L1M4 LINE L1 -1465 4681 4561 377 200 55 27 chrX 33505357 33505467 -143468673 - MLT1D LTR MaLR -381 124 12 1400 195 20 37 chrX 33505475 33505505 -143468635 + L1M4 LINE L1 4375 4404 -1742 2054 131 0 0 chrX 33505505 33505811 -143468329 + AluSx SINE Alu 1 306 -6 1400 195 20 37 chrX 33505811 33506302 -143467838 + L1M4 LINE L1 4404 5011 -1135 1725 144 17 30 chrX 33506302 33506600 -143467540 + AluJb SINE Alu 1 294 -18 1400 195 20 37 chrX 33506600 33506914 -143467226 + L1M4 LINE L1 5011 5329 -817 2572 42 0 0 chrX 33508375 33508682 -143465458 + AluY SINE Alu 1 307 -4 3539 199 79 25 chrX 33508702 33509639 -143464501 + L1ME1 LINE L1 5186 6166 0 1689 218 34 53 chrX 33509773 33509832 -143464308 - LTR16A LTR ERVL -2 448 389 1635 118 0 0 chrX 33509832 33510061 -143464079 - AluSg/x SINE Alu -9 301 73 1689 218 34 53 chrX 33510061 33510437 -143463703 - LTR16A LTR ERVL -61 389 21 1804 118 3 20 chrX 33510730 33511027 -143463113 - AluJo SINE Alu -20 292 1 220 300 58 96 chrX 33511298 33511473 -143462667 + L2 LINE L2 2064 2244 -1070 2108 103 0 0 chrX 33511473 33511754 -143462386 + AluSq SINE Alu 1 281 -32 220 300 58 96 chrX 33511754 33512204 -143461936 + L2 LINE L2 2244 2665 -649 186 387 0 0 chrX 33512451 33512526 -143461614 + L2 LINE L2 2896 2970 -302 2076 117 0 7 chrX 33512653 33512951 -143461189 + AluSx SINE Alu 1 296 -16 849 145 0 0 chrX 33513290 33513414 -143460726 - FLAM_C SINE Alu -9 124 1 2133 84 3 7 chrX 33513563 33513847 -143460293 - AluSx SINE Alu -11 301 19 348 133 0 33 chrX 33513951 33514006 -143460134 - U3 snRNA snRNA -149 68 15 1734 169 16 3 chrX 33514006 33514313 -143459827 + AluJb SINE Alu 2 312 0 1807 86 124 0 chrX 33514737 33515004 -143459136 - AluSx SINE Alu -10 302 3 4401 147 32 4 chrX 33515143 33515835 -143458305 + MER50 LTR ERV1 1 711 -23 3918 109 79 60 chrX 33515836 33515899 -143458241 - LTR8A LTR ERV1 -19 708 648 2038 127 0 17 chrX 33515899 33516037 -143458103 + AluSx SINE Alu 1 140 -172 2022 128 3 0 chrX 33516037 33516326 -143457814 + AluSx SINE Alu 1 290 -22 2038 127 0 17 chrX 33516326 33516487 -143457653 + AluSx SINE Alu 140 295 -17 3918 109 79 60 chrX 33516487 33516910 -143457230 - LTR8A LTR ERV1 -79 648 203 2250 90 0 0 chrX 33516910 33517210 -143456930 - AluSx SINE Alu -12 300 1 3918 109 79 60 chrX 33517210 33517417 -143456723 - LTR8A LTR ERV1 -524 203 1 237 136 23 0 chrX 33517439 33517483 -143456657 - L1M4 LINE L1 -913 5233 5189 2139 169 43 102 chrX 33517489 33518045 -143456095 + MER4E LTR ERV1 1 523 -256 1951 110 11 0 chrX 33518055 33518337 -143455803 + AluSx SINE Alu 1 285 -27 30 32 0 48 chrX 33518418 33518443 -143455697 + AT_rich Low_complexity Low_complexity 1 26 -34 2220 92 0 0 chrX 33518443 33518735 -143455405 - AluSc SINE Alu -17 292 1 30 32 0 48 chrX 33518735 33518772 -143455368 + AT_rich Low_complexity Low_complexity 26 60 0 1677 174 0 7 chrX 33518974 33519267 -143454873 - AluJo SINE Alu -21 291 1 1958 122 125 12 chrX 33519324 33519659 -143454481 - MER83C LTR ERV1 0 373 1 390 291 139 40 chrX 33519661 33519925 -143454215 - L1M4 LINE L1 -1299 4847 4544 2275 55 17 3 chrX 33519925 33520215 -143453925 - AluY SINE Alu -17 294 1 390 291 139 40 chrX 33520215 33520273 -143453867 - L1M4 LINE L1 -1602 4544 4493 1125 150 0 95 chrX 33520503 33520698 -143453442 + L1MA9 LINE L1 5853 6020 -292 1913 142 0 3 chrX 33520698 33520994 -143453146 - AluSx SINE Alu -17 295 1 1125 150 0 95 chrX 33520994 33521051 -143453089 + L1MA9 LINE L1 6020 6081 -231 296 143 89 0 chrX 33521053 33521109 -143453031 + L1MA9 LINE L1 6180 6240 -72 1254 186 16 65 chrX 33521568 33521891 -143452249 + AluJo SINE Alu 1 307 -5 2120 92 0 20 chrX 33521896 33522199 -143451941 + AluSq SINE Alu 1 297 -16 197 373 65 0 chrX 33522482 33522635 -143451505 - MIR SINE MIR 0 262 100 358 271 243 0 chrX 33524528 33524672 -143449468 - MIR SINE MIR -34 228 50 242 257 136 36 chrX 33524699 33524839 -143449301 + L2 LINE L2 3159 3312 -1 24 0 0 0 chrX 33526293 33526317 -143447823 + AT_rich Low_complexity Low_complexity 1 24 0 2375 100 0 10 chrX 33526422 33526733 -143447407 + AluSq SINE Alu 1 308 -5 1444 170 21 24 chrX 33526939 33527227 -143446913 - AluJo SINE Alu -5 307 21 283 277 183 34 chrX 33528099 33528288 -143445852 - L1MC4a LINE L1 -1850 5958 5799 2374 97 3 0 chrX 33528288 33528596 -143445544 - AluSp SINE Alu -4 309 1 2298 104 0 0 chrX 33528596 33528894 -143445246 - AluSq SINE Alu -15 298 1 283 277 183 34 chrX 33528894 33528938 -143445202 - L1MC4a LINE L1 -2008 5800 5689 323 241 224 23 chrX 33529094 33529268 -143444872 + L1M4 LINE L1 3580 3788 -2358 2495 54 0 0 chrX 33529415 33529713 -143444427 - AluY SINE Alu -13 298 1 946 208 38 9 chrX 33529860 33530072 -143444068 - MER20 DNA MER1_type -1 218 1 501 271 107 43 chrX 33530095 33530469 -143443671 - L1ME LINE L1 -312 5809 5460 2064 151 0 0 chrX 33530469 33530773 -143443367 - AluJb SINE Alu -8 304 1 1656 212 0 0 chrX 33530774 33531066 -143443074 - AluJb SINE Alu -20 292 1 501 271 107 43 chrX 33531066 33531149 -143442991 - L1ME LINE L1 -660 5461 5308 342 302 77 48 chrX 33531416 33531573 -143442567 + L1M4 LINE L1 4910 5078 -1068 2154 125 0 0 chrX 33531573 33531869 -143442271 - AluSx SINE Alu -16 296 1 342 302 77 48 chrX 33531869 33531959 -143442181 + L1M4 LINE L1 5078 5164 -982 183 277 62 31 chrX 33532143 33532208 -143441932 + L2 LINE L2 2425 2491 -823 2187 101 17 0 chrX 33532400 33532687 -143441453 - AluSx SINE Alu -20 292 1 1963 164 3 6 chrX 33532891 33533069 -143441071 - AluJb SINE Alu -2 310 132 2443 77 7 0 chrX 33533069 33533366 -143440774 - AluSc SINE Alu -10 299 1 1963 164 3 6 chrX 33533366 33533498 -143440642 - AluJb SINE Alu -180 132 1 319 260 160 13 chrX 33533499 33533649 -143440491 - L1ME LINE L1 -376 5745 5574 247 275 28 28 chrX 33533872 33533981 -143440159 - L1ME LINE L1 -468 5653 5545 2009 153 3 3 chrX 33534230 33534531 -143439609 + AluJb SINE Alu 1 301 -11 2228 128 0 0 chrX 33534635 33534941 -143439199 + AluSx SINE Alu 1 306 -6 1771 120 7 66 chrX 33535015 33535316 -143438824 + AluJb SINE Alu 1 283 -29 2379 85 58 33 chrX 33535403 33535768 -143438372 + THE1C LTR MaLR 2 375 0 225 0 0 0 chrX 33535821 33535846 -143438294 + (TA)n Simple_repeat Simple_repeat 1 25 0 1110 73 0 53 chrX 33535846 33535997 -143438143 - AluSg/x SINE Alu -12 298 156 1618 85 0 0 chrX 33535997 33536196 -143437944 - AluSx SINE Alu -113 199 1 2856 112 18 59 chrX 33536209 33536698 -143437442 - LTR8A LTR ERV1 0 727 183 1642 75 44 49 chrX 33536698 33536924 -143437216 - MER30 DNA MER1_type -1 229 5 2856 112 18 59 chrX 33536924 33537100 -143437040 - LTR8A LTR ERV1 -544 183 1 2431 70 6 10 chrX 33537479 33537791 -143436349 - AluSq SINE Alu -2 311 1 293 93 19 0 chrX 33537802 33537856 -143436284 + (TTTTA)n Simple_repeat Simple_repeat 1 55 0 2280 197 51 30 chrX 33538043 33538575 -143435565 - MER21B LTR ERV1 -20 843 301 805 191 6 19 chrX 33538577 33538739 -143435401 - AluJb SINE Alu -16 296 137 1812 149 33 13 chrX 33538746 33539048 -143435092 - MER21B LTR ERV1 -553 310 3 537 231 43 0 chrX 33539636 33539753 -143434387 + MER92C LTR ERV1 188 309 -245 255 277 124 62 chrX 33539898 33539990 -143434150 + L2 LINE L2 3085 3170 -102 2358 88 0 0 chrX 33539990 33540287 -143433853 - AluSg SINE Alu -13 297 1 255 277 124 62 chrX 33540287 33540371 -143433769 + L2 LINE L2 3170 3272 0 525 227 189 0 chrX 33540508 33540693 -143433447 + MIR SINE MIR 23 242 -20 238 291 108 58 chrX 33541575 33541816 -143432324 - HAL1 LINE L1 -974 1533 1281 5834 226 82 32 chrX 33542101 33542399 -143431741 - L1ME LINE L1 -570 5530 5248 2232 96 14 0 chrX 33542399 33542690 -143431450 - AluSx SINE Alu -16 296 2 5834 226 82 32 chrX 33542690 33543098 -143431042 - L1ME LINE L1 -852 5248 4862 1668 163 21 14 chrX 33543098 33543386 -143430754 + AluJb SINE Alu 1 290 -22 5834 226 82 32 chrX 33543386 33544032 -143430108 - L1ME LINE L1 -1238 4862 4249 2308 102 0 37 chrX 33544032 33544355 -143429785 - AluSp SINE Alu -2 311 1 5834 226 82 32 chrX 33544355 33544662 -143429478 - L1ME LINE L1 -1851 4249 3959 1832 172 3 0 chrX 33544662 33544947 -143429193 - AluJo SINE Alu -26 286 1 5834 226 82 32 chrX 33544947 33544963 -143429177 - L1ME LINE L1 -2141 3959 3945 1954 111 42 29 chrX 33544963 33545270 -143428870 - AluSq SINE Alu -2 311 1 5834 226 82 32 chrX 33545270 33545615 -143428525 - L1ME LINE L1 -2155 3945 3619 2112 137 3 0 chrX 33545615 33545915 -143428225 - AluSq SINE Alu -12 301 1 5834 226 82 32 chrX 33545915 33546047 -143428093 - L1ME LINE L1 -2481 3619 3495 2372 100 0 0 chrX 33546047 33546356 -143427784 + AluSg SINE Alu 1 309 -1 5834 226 82 32 chrX 33546356 33546545 -143427595 - L1ME LINE L1 -2605 3495 3083 627 240 150 65 chrX 33546824 33546997 -143427143 - L1ME3A LINE L1 -232 5938 5781 1744 190 7 0 chrX 33546997 33547292 -143426848 - AluJo SINE Alu -15 297 1 627 240 150 65 chrX 33547292 33547638 -143426502 - L1ME3A LINE L1 -389 5781 5375 2136 109 0 45 chrX 33547741 33548083 -143426057 - AluSx SINE Alu 0 328 1 1640 156 57 18 chrX 33548093 33548376 -143425764 - AluJb SINE Alu -13 299 6 2044 113 3 60 chrX 33548452 33548771 -143425369 - AluSx SINE Alu -11 301 1 1683 221 59 137 chrX 33548823 33549043 -143425097 - L1ME LINE L1 -3890 2190 1954 3376 150 35 25 chrX 33549043 33549251 -143424889 - L1MD1 LINE L1 -8 6234 6030 2245 102 10 0 chrX 33549251 33549556 -143424584 - AluSx SINE Alu -4 308 1 3376 150 35 25 chrX 33549556 33549948 -143424192 - L1MD1 LINE L1 -212 6030 5628 1683 221 59 137 chrX 33549948 33550040 -143424100 - L1ME LINE L1 -4126 1954 1856 2318 110 0 0 chrX 33550040 33550349 -143423791 - AluSx SINE Alu -2 310 2 954 0 8 24 chrX 33550349 33550473 -143423667 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 2067 121 4 0 chrX 33550473 33550754 -143423386 - AluSx SINE Alu -30 282 1 270 0 0 0 chrX 33550755 33550785 -143423355 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2187 67 0 54 chrX 33550785 33551082 -143423058 - AluY SINE Alu -30 281 1 762 203 8 0 chrX 33551084 33551212 -143422928 - FLAM_A SINE Alu -3 130 2 1683 221 59 137 chrX 33551212 33551667 -143422473 - L1ME LINE L1 -4222 1858 1369 1026 127 19 0 chrX 33551667 33551824 -143422316 - L1MA2 LINE L1 0 6304 6145 564 97 0 0 chrX 33551825 33551897 -143422243 - U6 snRNA snRNA -18 89 18 1683 221 59 137 chrX 33551897 33552618 -143421522 - L1ME LINE L1 -4710 1370 613 2322 91 6 25 chrX 33552642 33552961 -143421179 - AluSq SINE Alu 0 313 1 369 305 37 32 chrX 33553341 33553531 -143420609 - L1ME LINE L1 -5878 192 2 * 644 189 57 11 chrX 33553530 33553705 -143420435 - L1M4 LINE L1 -2985 3161 2979 394 209 23 70 chrX 33553706 33553769 -143420371 - L1MA10 LINE L1 -3 6331 6275 1817 164 17 7 chrX 33553769 33554062 -143420078 + AluJo SINE Alu 5 300 -12 394 209 23 70 chrX 33554062 33554127 -143420013 - L1MA10 LINE L1 -59 6275 6209 453 220 37 59 chrX 33554130 33554281 -143419859 - L1M4 LINE L1 -2505 3641 3488 2090 146 7 0 chrX 33554281 33554589 -143419551 - AluSx SINE Alu -2 310 1 453 220 37 59 chrX 33554589 33554696 -143419444 - L1M4 LINE L1 -2658 3488 3310 1829 165 3 13 chrX 33555583 33555892 -143418248 - AluJb SINE Alu -6 306 1 333 231 110 67 chrX 33556243 33556385 -143417755 - L1ME LINE L1 -684 5978 5844 2431 88 3 0 chrX 33556385 33556693 -143417447 - AluSc SINE Alu 0 309 1 333 231 110 67 chrX 33556693 33556896 -143417244 - L1ME LINE L1 -818 5844 5606 2282 100 0 10 chrX 33556896 33557197 -143416943 - AluSx SINE Alu -14 298 1 333 231 110 67 chrX 33557197 33557216 -143416924 - L1ME LINE L1 -1056 5606 5589 42 0 0 0 chrX 33557240 33557282 -143416858 + AT_rich Low_complexity Low_complexity 1 42 0 1963 87 0 15 chrX 33557336 33557600 -143416540 - AluSx SINE Alu -52 260 1 2163 125 3 0 chrX 33557637 33557934 -143416206 - AluSq SINE Alu -15 298 1 759 289 108 25 chrX 33558000 33558564 -143415576 - L1ME LINE L1 -1476 5168 4558 627 218 42 36 chrX 33558591 33558756 -143415384 - MIR SINE MIR 0 262 97 536 236 64 81 chrX 33558763 33558855 -143415285 - L1ME LINE L1 -2098 4546 4454 2320 105 0 6 chrX 33558855 33559169 -143414971 - AluSx SINE Alu 0 312 1 536 236 64 81 chrX 33559169 33559373 -143414767 - L1ME LINE L1 -2190 4454 4255 8320 17 0 0 chrX 33559376 33560749 -143413391 - L1PA3 LINE L1 -1 6154 4780 4034 13 0 2 chrX 33560749 33561206 -143412934 + L1P LINE L1 4191 4646 -1500 399 281 78 22 chrX 33561217 33561448 -143412692 - L1ME LINE L1 -2383 4261 4018 546 243 32 0 chrX 33562036 33562166 -143411974 + MER2 DNA MER2_type 1 143 -96 402 197 0 0 chrX 33562157 33562218 -143411922 + MER2 DNA MER2_type 285 345 0 * 1605 262 134 24 chrX 33562220 33562309 -143411831 - HAL1 LINE L1 -375 2132 2054 1691 162 3 43 chrX 33562309 33562611 -143411529 - AluJo SINE Alu -22 290 1 1605 262 134 24 chrX 33562611 33563177 -143410963 - HAL1 LINE L1 -453 2054 1405 558 270 34 27 chrX 33563203 33563431 -143410709 - HERVL68 LTR ERVL -1798 1239 1075 528 198 269 18 chrX 33563431 33563598 -143410542 - MER68 LTR ERV1 -351 211 3 251 235 0 0 chrX 33563600 33563668 -143410472 - L1ME LINE L1 -4598 2227 2160 787 223 75 81 chrX 33563687 33563869 -143410271 - L1ME LINE L1 -6185 357 176 2007 148 0 0 chrX 33563869 33563880 -143410260 - AluSq SINE Alu -21 292 282 243 0 0 0 chrX 33563880 33563907 -143410233 + (TG)n Simple_repeat Simple_repeat 1 27 0 2007 148 0 0 chrX 33563907 33564186 -143409954 - AluSq SINE Alu -30 283 2 787 223 75 81 chrX 33564186 33564348 -143409792 - L1ME LINE L1 -6366 176 15 2355 90 0 13 chrX 33564488 33564822 -143409318 + AluSg SINE Alu 1 310 0 2339 98 0 0 chrX 33565033 33565330 -143408810 + AluSq SINE Alu 1 297 -16 216 200 0 0 chrX 33565581 33565626 -143408514 + (TG)n Simple_repeat Simple_repeat 2 46 0 1379 135 5 10 chrX 33565627 33565835 -143408305 - AluJb SINE Alu -20 292 86 275 305 112 22 chrX 33566340 33566563 -143407577 - HAL1 LINE L1 -838 1669 1427 662 260 23 34 chrX 33566716 33566893 -143407247 - MER68 LTR ERV1 -4 558 384 256 230 50 60 chrX 33566960 33567060 -143407080 - MER68 LTR ERV1 -202 360 262 2477 79 0 0 chrX 33567347 33567650 -143406490 - AluSg SINE Alu -7 303 1 231 114 0 0 chrX 33567988 33568023 -143406117 + (CA)n Simple_repeat Simple_repeat 2 36 0 1733 178 7 16 chrX 33570208 33570512 -143403628 + AluJb SINE Alu 1 301 -11 701 202 0 16 chrX 33570546 33570670 -143403470 - FLAM_C SINE Alu -15 128 7 2126 102 0 36 chrX 33570767 33571071 -143403069 - AluSq SINE Alu -18 295 3 689 86 0 11 chrX 33572113 33572206 -143401934 + Tigger2a DNA MER2_type 2 93 -341 * 1054 131 13 0 chrX 33572204 33572357 -143401783 + THE1B LTR MaLR 210 364 0 1911 166 7 0 chrX 33572677 33572979 -143401161 + AluJo SINE Alu 1 304 -8 892 299 53 19 chrX 33573354 33573421 -143400719 - HERVL LTR ERVL -2332 3322 3259 2623 111 8 24 chrX 33573421 33573791 -143400349 + THE1B LTR MaLR 1 364 0 892 299 53 19 chrX 33573791 33574044 -143400096 - HERVL LTR ERVL -2395 3259 2991 671 296 36 8 chrX 33574043 33574368 -143399772 - HERVL LTR ERVL -2338 3316 2948 * 597 254 113 17 chrX 33574387 33574564 -143399576 - HERVL LTR ERVL -2559 2437 2244 * 1223 293 20 6 chrX 33574558 33574916 -143399224 - HERVL LTR ERVL -2946 2050 1688 269 177 97 0 chrX 33574988 33575050 -143399090 + L1M1 LINE L1 2337 2404 -5161 1315 177 48 61 chrX 33575050 33575168 -143398972 + AluJo SINE Alu 1 119 -183 453 62 0 0 chrX 33575168 33575233 -143398907 + (CA)n Simple_repeat Simple_repeat 2 66 0 1315 177 48 61 chrX 33575233 33575274 -143398866 + AluJo SINE Alu 119 159 -143 360 0 0 0 chrX 33575274 33575314 -143398826 + (CA)n Simple_repeat Simple_repeat 2 41 0 1315 177 48 61 chrX 33575314 33575447 -143398693 + AluJo SINE Alu 159 290 -12 709 199 21 43 chrX 33575471 33575657 -143398483 - L1M4 LINE L1 -2073 4073 3892 1808 176 7 0 chrX 33575659 33575955 -143398185 - AluJo SINE Alu -14 298 1 773 183 23 15 chrX 33575957 33576088 -143398052 - AluJo/FLAM SINE Alu -179 133 2 286 289 22 30 chrX 33576089 33576224 -143397916 - L1MEc LINE L1 -4757 1639 1506 1225 305 61 65 chrX 33576280 33576573 -143397567 - L1MEc LINE L1 -5485 911 618 6675 64 32 0 chrX 33576573 33577458 -143396682 - L1PA8A LINE L1 -1 6130 5213 1225 305 61 65 chrX 33577458 33578053 -143396087 - L1MEc LINE L1 -5778 618 27 374 271 112 34 chrX 33578058 33578397 -143395743 - L1MDb LINE L1 -4989 1420 1162 1788 225 81 45 chrX 33578515 33578580 -143395560 - MLT1E2 LTR MaLR 0 626 565 2117 126 10 7 chrX 33578580 33578873 -143395267 - AluSx SINE Alu -18 294 1 1788 225 81 45 chrX 33578873 33579376 -143394764 - MLT1E2 LTR MaLR -61 565 60 4041 105 8 12 chrX 33579388 33579976 -143394164 + MER11C LTR ERVK 472 1057 -14 2421 103 0 3 chrX 33579993 33580322 -143393818 + HERVK11 LTR ERVK 1 328 -7625 * 4358 113 32 5 chrX 33580310 33580939 -143393201 + HERVK11 LTR ERVK 206 851 -7102 3155 83 38 5 chrX 33580939 33581531 -143392609 + HERVK11 LTR ERVK 1165 2710 -5243 * 8451 34 2 0 chrX 33581513 33582484 -143391656 + HERVK11 LTR ERVK 2912 3884 -4069 1013 107 0 0 chrX 33582458 33582598 -143391542 + HERVK11 LTR ERVK 4462 4601 -3352 * 3317 37 92 2 chrX 33582596 33583165 -143390975 + HERVK11 LTR ERVK 5525 6230 -1723 37464 87 17 13 chrX 33583166 33584996 -143389144 + L1PA6 LINE L1 14 1836 -4318 2248 102 3 3 chrX 33584996 33585290 -143388850 - AluY SINE Alu -17 294 1 37464 87 17 13 chrX 33585290 33587646 -143386494 + L1PA6 LINE L1 1836 4231 -1923 3900 104 4 4 chrX 33587646 33588157 -143385983 + MER9 LTR ERVK 1 511 0 37464 87 17 13 chrX 33588157 33590075 -143384065 + L1PA6 LINE L1 4231 6141 -13 258 143 0 0 chrX 33590084 33590133 -143384007 + (A)n Simple_repeat Simple_repeat 1 49 0 2426 65 14 140 chrX 33590133 33590222 -143383918 - THE1C-int LTR MaLR -1205 375 276 2044 130 7 13 chrX 33590222 33590530 -143383610 - AluSx SINE Alu -6 306 1 2426 65 14 140 chrX 33590530 33590869 -143383271 - THE1C-int LTR MaLR -1304 276 1 2717 91 16 42 chrX 33590869 33591254 -143382886 - THE1C LTR MaLR 0 375 1 682 132 0 0 chrX 33591256 33591347 -143382793 - AluJ/FLAM SINE Alu -220 92 2 1778 159 17 0 chrX 33591443 33591732 -143382408 + AluJo SINE Alu 5 298 -14 2278 104 0 0 chrX 33593642 33593940 -143380200 - AluSx SINE Alu -14 298 1 1714 167 11 0 chrX 33594747 33595042 -143379098 + AluJb SINE Alu 13 310 0 3636 161 34 29 chrX 33595188 33595722 -143378418 - MER44D DNA MER2_type -1882 605 194 2249 112 10 0 chrX 33595722 33596018 -143378122 + AluSx SINE Alu 1 299 -13 3636 161 34 29 chrX 33596018 33596100 -143378040 - MER44D DNA MER2_type -2293 194 114 232 287 66 22 chrX 33597098 33597234 -143376906 + L1MEd LINE L1 153 294 -5911 431 329 93 29 chrX 33597302 33597712 -143376428 + L1MEd LINE L1 388 823 -5382 * 3716 111 55 10 chrX 33597706 33598303 -143375837 + L1MC2 LINE L1 5653 6276 -68 2911 179 96 8 chrX 33598312 33599020 -143375120 + L1MEd LINE L1 2344 3113 -3102 2723 163 42 6 chrX 33599058 33599556 -143374584 + L1MD1 LINE L1 5727 6242 0 295 222 12 0 chrX 33599629 33599710 -143374430 + L1ME2 LINE L1 2193 2274 -4122 * 2799 222 55 40 chrX 33599706 33600590 -143373550 + L1ME2 LINE L1 3944 4844 -1371 1437 173 4 8 chrX 33600590 33600827 -143373313 - MER46A DNA MER2_type 0 236 1 2799 222 55 40 chrX 33600827 33600851 -143373289 + L1ME2 LINE L1 4844 4866 -1349 29 84 0 0 chrX 33601016 33601087 -143373053 + AT_rich Low_complexity Low_complexity 1 71 0 1767 133 23 53 chrX 33601120 33601420 -143372720 - AluJo SINE Alu -20 292 2 1930 195 157 31 chrX 33601476 33602094 -143372046 + L1ME2 LINE L1 4958 5497 -756 180 0 0 0 chrX 33602094 33602114 -143372026 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2137 120 0 7 chrX 33602119 33602403 -143371737 - AluSx SINE Alu -30 282 1 1930 195 157 31 chrX 33602403 33602928 -143371212 + L1ME2 LINE L1 5500 6253 0 467 176 92 13 chrX 33603370 33603523 -143370617 + L1MEd LINE L1 3143 3307 -2908 310 359 35 0 chrX 33603879 33604049 -143370091 - MER5A DNA MER1_type -1 188 3 627 246 155 5 chrX 33604105 33604312 -143369828 - MIR SINE MIR -12 250 13 279 288 240 7 chrX 33605245 33605391 -143368749 - MER5A DNA MER1_type 0 189 10 287 25 25 0 chrX 33605862 33605902 -143368238 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 340 309 110 31 chrX 33605942 33606133 -143368007 + HAL1 LINE L1 1328 1533 -974 363 222 81 0 chrX 33607028 33607127 -143367013 - MIR SINE MIR -121 141 35 2451 76 0 0 chrX 33607143 33607444 -143366696 - AluSg SINE Alu -9 301 1 302 235 143 34 chrX 33607585 33607704 -143366436 - L2 LINE L2 0 3272 3141 548 216 43 0 chrX 33607876 33607992 -143366148 - MER92C LTR ERV1 -246 308 188 1873 145 30 13 chrX 33608578 33608881 -143365259 + MER21B LTR ERV1 3 310 -553 778 195 6 19 chrX 33608888 33609047 -143365093 + AluJb SINE Alu 137 293 -19 1972 184 63 83 chrX 33609052 33609242 -143364898 + MER21B LTR ERV1 301 493 -370 2208 100 28 0 chrX 33609242 33609531 -143364609 - AluSp SINE Alu -16 297 1 1972 184 63 83 chrX 33609531 33609894 -143364246 + MER21B LTR ERV1 493 843 -20 2395 90 6 3 chrX 33610332 33610643 -143363497 - AluSx SINE Alu 0 312 1 364 264 181 21 chrX 33610887 33611080 -143363060 - L1ME LINE L1 -368 5753 5530 270 263 20 30 chrX 33611248 33611347 -143362793 - L1ME LINE L1 -2156 5652 5555 1626 106 12 27 chrX 33611451 33611636 -143362504 + MER41A LTR ERV1 303 484 -70 2192 108 7 0 chrX 33611636 33611961 -143362179 - AluSx SINE Alu 0 312 1 1626 106 12 27 chrX 33611961 33612031 -143362109 + MER41A LTR ERV1 484 554 0 380 271 57 64 chrX 33612103 33612383 -143361757 - L1MDa LINE L1 -3167 3373 3096 945 230 42 82 chrX 33612565 33612736 -143361404 - L2 LINE L2 0 3313 3137 2491 169 36 65 chrX 33612736 33613261 -143360879 - LTR54 LTR ERV1 0 510 1 945 230 42 82 chrX 33613261 33613468 -143360672 - L2 LINE L2 -176 3137 2950 443 289 18 0 chrX 33613567 33613681 -143360459 - L2 LINE L2 -286 3027 2912 2151 92 0 7 chrX 33613865 33614146 -143359994 + AluSx SINE Alu 1 279 -33 2028 120 46 0 chrX 33614898 33615181 -143358959 - AluSg SINE Alu -14 296 1 309 283 42 78 chrX 33615284 33615450 -143358690 - L1MDa LINE L1 -3980 2560 2401 2260 107 0 7 chrX 33615493 33615803 -143358337 - AluSg1 SINE Alu -1 308 1 1338 167 0 5 chrX 33615807 33616017 -143358123 + MER3 DNA MER1_type 1 209 0 2827 167 33 8 chrX 33616091 33616582 -143357558 + Tigger1 DNA MER2_type 1 503 -1915 2259 117 0 0 chrX 33616583 33616882 -143357258 + AluSx SINE Alu 1 299 -13 332 224 0 0 chrX 33616953 33617020 -143357120 + Tigger1 DNA MER2_type 1 67 -2351 5105 98 16 33 chrX 33617037 33617572 -143356568 + Tigger1 DNA MER2_type 494 1014 -1404 2210 123 0 3 chrX 33617572 33617881 -143356259 - AluSp SINE Alu 0 313 6 5105 98 16 33 chrX 33617881 33618111 -143356029 + Tigger1 DNA MER2_type 1014 1246 -1172 470 163 0 0 chrX 33618113 33618193 -143355947 + L1ME LINE L1 897 976 -5094 2324 110 0 0 chrX 33618199 33618500 -143355640 + AluSq SINE Alu 1 301 -12 1795 132 4 0 chrX 33618506 33618771 -143355369 + AluSx SINE Alu 39 304 -8 4909 99 42 42 chrX 33618771 33618907 -143355233 + L1MA2 LINE L1 2758 2893 -4672 2099 108 50 0 chrX 33618907 33619204 -143354936 + AluSx SINE Alu 1 312 0 4909 99 42 42 chrX 33619204 33619490 -143354650 + L1MA2 LINE L1 2893 3178 -4387 2177 105 28 0 chrX 33619490 33619776 -143354364 + AluSg SINE Alu 1 294 -16 4909 99 42 42 chrX 33619776 33619895 -143354245 + L1MA2 LINE L1 3178 3296 -4269 186 43 0 0 chrX 33619895 33619918 -143354222 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4909 99 42 42 chrX 33619918 33620188 -143353952 + L1MA2 LINE L1 3295 3571 -3994 4777 46 3 36 chrX 33620188 33620792 -143353348 + LTR10C LTR ERV1 1 584 -7 2146 196 28 8 chrX 33620812 33621281 -143352859 + L1MA2 LINE L1 3546 4023 -3542 * 7474 127 17 13 chrX 33621277 33621567 -143352573 + L1MA2 LINE L1 5458 5745 -1978 1928 141 3 28 chrX 33621567 33621887 -143352253 + AluJb SINE Alu 1 312 0 7474 127 17 13 chrX 33621887 33623844 -143350296 + L1MA2 LINE L1 5745 7711 -12 3864 127 12 46 chrX 33623944 33624476 -143349664 + Tigger1 DNA MER2_type 1785 2292 -126 584 173 135 0 chrX 33624476 33624580 -143349560 - FLAM_C SINE Alu -15 118 1 3864 127 12 46 chrX 33624580 33624703 -143349437 + Tigger1 DNA MER2_type 2292 2418 0 704 156 16 16 chrX 33624745 33624873 -143349267 - L1MD1 LINE L1 -4 6632 6505 * 870 172 48 88 chrX 33624872 33625006 -143349134 + L1MB4 LINE L1 5937 6058 -122 2495 78 3 0 chrX 33625006 33625313 -143348827 + AluSp SINE Alu 1 308 -5 870 172 48 88 chrX 33625313 33625428 -143348712 + L1MB4 LINE L1 6058 6176 -4 1751 216 8 16 chrX 33625448 33625818 -143348322 + MLT1A2 LTR MaLR 8 374 0 907 204 0 27 chrX 33625818 33626004 -143348136 - L1MD1 LINE L1 -118 6518 6338 788 165 165 6 chrX 33626006 33626182 -143347958 - L1MD1 LINE L1 -476 6277 6074 13827 123 23 2 chrX 33626184 33628171 -143345969 + ERVL-B3 LTR ERVL 3730 5757 -7 2848 194 7 61 chrX 33628171 33628693 -143345447 + MLT2B3 LTR ERVL 1 489 -65 1445 179 42 28 chrX 33628693 33628978 -143345162 + AluJb SINE Alu 1 289 -23 2848 194 7 61 chrX 33628978 33629041 -143345099 + MLT2B3 LTR ERVL 489 554 0 4518 198 60 40 chrX 33629045 33630032 -143344108 + MLT-int LTR MaLR 5 1010 -725 2631 155 12 0 chrX 33630156 33630569 -143343571 + MLT1A1-int LTR MaLR 1318 1735 0 2378 137 3 8 chrX 33630578 33630936 -143343204 + MLT1A1 LTR MaLR 10 365 0 7278 239 59 21 chrX 33630948 33631101 -143343039 - L1MD1 LINE L1 -723 6030 5884 2204 99 0 16 chrX 33631101 33631405 -143342735 - AluSq SINE Alu -14 299 1 7278 239 59 21 chrX 33631405 33632828 -143341312 - L1MD1 LINE L1 -869 5884 4323 1536 179 14 17 chrX 33632828 33633119 -143341021 + AluJb SINE Alu 1 290 -22 7278 239 59 21 chrX 33633119 33634010 -143340130 - L1MD1 LINE L1 -2430 4323 3467 2044 204 41 59 chrX 33634009 33634674 -143339466 - L1MD1 LINE L1 -4453 2087 1435 * 2198 141 82 24 chrX 33635038 33635499 -143338641 - L1MD1 LINE L1 -5071 1472 985 300 332 57 81 chrX 33635499 33635746 -143338394 - L1MD1 LINE L1 -5825 715 475 907 256 120 81 chrX 33636222 33636840 -143337300 - L1MD1 LINE L1 -5898 642 1 2948 236 116 19 chrX 33636997 33638075 -143336065 + L1MC4a LINE L1 5255 6437 -1371 1157 188 58 49 chrX 33638161 33638486 -143335654 - MER45B DNA AcHobo 0 1040 713 3008 189 17 15 chrX 33638582 33638635 -143335505 + MER6 DNA MER2_type 1 52 -813 3291 169 78 3 chrX 33638635 33639214 -143334926 + LTR26E LTR ERV1 1 622 0 3008 189 17 15 chrX 33639214 33639679 -143334461 + MER6 DNA MER2_type 52 520 -345 2225 185 60 137 chrX 33639679 33639969 -143334171 + LTR8A LTR ERV1 1 312 -415 2382 88 7 0 chrX 33639969 33640277 -143333863 - AluSg SINE Alu 0 310 1 2225 185 60 137 chrX 33640277 33640774 -143333366 + LTR8A LTR ERV1 312 727 0 918 143 0 19 chrX 33640774 33640935 -143333205 + MER6 DNA MER2_type 514 671 -194 15298 210 15 26 chrX 33640947 33641306 -143332834 - L1PB1 LINE L1 -1 6866 6505 423 0 0 0 chrX 33641306 33641353 -143332787 + (TA)n Simple_repeat Simple_repeat 1 47 0 15298 210 15 26 chrX 33641353 33641714 -143332426 - L1PB1 LINE L1 -362 6505 6142 2103 88 10 33 chrX 33641714 33642021 -143332119 - AluY SINE Alu -11 300 1 15298 210 15 26 chrX 33642021 33642085 -143332055 - L1PB1 LINE L1 -725 6142 6079 2372 96 7 0 chrX 33642085 33642388 -143331752 - AluSc SINE Alu -4 305 1 15298 210 15 26 chrX 33642388 33644506 -143329634 - L1PB1 LINE L1 -788 6079 3940 273 29 0 0 chrX 33644506 33644540 -143329600 + (TG)n Simple_repeat Simple_repeat 2 35 0 15298 210 15 26 chrX 33644540 33644551 -143329589 - L1PB1 LINE L1 -2927 3940 3930 2215 119 0 10 chrX 33644551 33644854 -143329286 + AluSx SINE Alu 2 301 -11 15298 210 15 26 chrX 33644854 33646579 -143327561 - L1PB1 LINE L1 -2937 3930 2228 2902 229 83 23 chrX 33646579 33647475 -143326665 - L1PB1 LINE L1 -5909 954 6 1411 104 5 9 chrX 33647482 33647694 -143326446 + MER6 DNA MER2_type 654 864 -1 2563 271 62 22 chrX 33647699 33648441 -143325699 - MER45C DNA AcHobo -176 777 2 1635 235 45 38 chrX 33648442 33649121 -143325019 + L1MC4 LINE L1 6621 7231 -730 836 185 7 0 chrX 33649127 33649262 -143324878 - AluJo SINE Alu -175 137 2 756 194 65 51 chrX 33649269 33649483 -143324657 + L1MC4a LINE L1 7215 7417 -391 934 184 6 12 chrX 33649483 33649651 -143324489 - MLT1C LTR MaLR 0 467 301 584 153 99 54 chrX 33649722 33649794 -143324346 + FLAM_A SINE Alu 6 86 -225 3493 193 8 69 chrX 33649794 33650529 -143323611 + LTR8 LTR ERV1 1 690 -1 584 153 99 54 chrX 33650529 33650567 -143323573 + FLAM_A SINE Alu 86 121 -190 500 208 162 63 chrX 33650583 33650968 -143323172 - MER34B LTR ERV1 -65 520 5 1889 139 7 42 chrX 33650976 33651285 -143322855 - MLT1C LTR MaLR -165 302 5 796 230 97 90 chrX 33651333 33651867 -143322273 + L1MC4 LINE L1 7505 8042 0 1058 177 146 81 chrX 33653255 33653639 -143320501 - LTR37A LTR ERV1 0 426 18 1785 104 0 0 chrX 33653676 33653907 -143320233 - AluSg/x SINE Alu -16 296 66 933 184 160 85 chrX 33655292 33655764 -143318376 + MER34C LTR ERV1 37 751 -36 4177 119 47 64 chrX 33655774 33656342 -143317798 + LTR8A LTR ERV1 1 556 -171 2226 101 3 10 chrX 33656342 33656638 -143317502 + AluSg1 SINE Alu 1 294 -15 4177 119 47 64 chrX 33656638 33656808 -143317332 + LTR8A LTR ERV1 556 727 0 237 267 17 0 chrX 33657149 33657209 -143316931 + LTR48B LTR ERV1 4 64 -580 1205 218 54 78 chrX 33657219 33657287 -143316853 + MER39 LTR ERV1 256 324 -383 2481 122 8 40 chrX 33657287 33657663 -143316477 + THE1B LTR MaLR 1 364 0 1205 218 54 78 chrX 33657663 33658057 -143316083 + MER39 LTR ERV1 324 707 0 468 0 0 0 chrX 33660175 33660227 -143313913 + (CA)n Simple_repeat Simple_repeat 2 53 0 218 355 30 46 chrX 33661117 33661314 -143312826 - L2 LINE L2 -443 2871 2678 795 159 0 0 chrX 33661830 33661981 -143312159 + CT-rich Low_complexity Low_complexity 2 152 0 1474 254 30 68 chrX 33661987 33662545 -143311595 - MER34 LTR ERV1 -5 537 1 466 211 216 65 chrX 33663688 33663782 -143310358 - MIR SINE MIR -25 237 159 1794 169 3 19 chrX 33663782 33664089 -143310051 + AluJo SINE Alu 1 302 -10 466 211 216 65 chrX 33664089 33664179 -143309961 - MIR SINE MIR -103 159 25 2187 33 0 0 chrX 33664974 33665218 -143308922 - L1PA3 LINE L1 0 6155 5912 2517 64 3 0 chrX 33665398 33665694 -143308446 + AluSp SINE Alu 1 297 -16 320 292 74 35 chrX 33665777 33666034 -143308106 - L1MEc LINE L1 -4199 2197 1931 1952 240 73 23 chrX 33666048 33666605 -143307535 + MER77 LTR ERV1 41 593 -14 2593 157 20 0 chrX 33666723 33667125 -143307015 - Tigger7 DNA MER2_type -323 410 1 863 168 17 23 chrX 33667152 33667325 -143306815 - MIR SINE MIR 0 262 91 1652 146 21 14 chrX 33667372 33667652 -143306488 + AluJo SINE Alu 1 282 -30 1072 62 23 0 chrX 33667670 33667799 -143306341 + AluY SINE Alu 1 132 -179 201 74 0 0 chrX 33667800 33667827 -143306313 + (TAA)n Simple_repeat Simple_repeat 2 28 0 201 94 0 0 chrX 33669525 33669557 -143304583 + (CAAAC)n Simple_repeat Simple_repeat 3 34 0 2205 126 101 130 chrX 33670157 33670627 -143303513 + LTR49 LTR ERV1 1 391 -151 1938 148 7 3 chrX 33670627 33670931 -143303209 - AluJo SINE Alu -7 305 1 2205 126 101 130 chrX 33670931 33671067 -143303073 + LTR49 LTR ERV1 391 529 -13 2478 82 0 0 chrX 33671240 33671544 -143302596 + AluSg SINE Alu 1 304 -6 343 261 45 37 chrX 33671588 33671659 -143302481 + MIR SINE MIR 124 198 -64 2347 102 3 0 chrX 33671659 33671963 -143302177 + AluSq SINE Alu 1 305 -8 343 261 45 37 chrX 33671963 33672025 -143302115 + MIR SINE MIR 198 258 -4 638 213 67 13 chrX 33672222 33672372 -143301768 + MER5A DNA MER1_type 6 163 -26 4771 114 23 89 chrX 33672552 33673393 -143300747 + LTR1 LTR ERV1 1 785 0 2213 109 3 0 chrX 33673557 33673850 -143300290 - AluSg SINE Alu -16 294 1 2272 139 109 24 chrX 33674249 33674366 -143299774 + LOR1b LTR ERV1 3 109 -352 1964 133 69 39 chrX 33674366 33674728 -143299412 + THE1C LTR MaLR 1 373 -2 2272 139 109 24 chrX 33674728 33675033 -143299107 + LOR1b LTR ERV1 109 461 0 2798 78 26 0 chrX 33675109 33675455 -143298685 - L1PA7 LINE L1 0 6154 5800 1782 172 59 56 chrX 33675821 33676416 -143297724 - L1MC5 LINE L1 -30 7931 7264 2271 169 68 56 chrX 33677144 33677641 -143296499 - MLT1D LTR MaLR 0 505 3 1881 185 53 24 chrX 33677956 33678697 -143295443 - L1MDa LINE L1 -1880 4660 1154 1241 223 75 121 chrX 33678701 33679463 -143294677 + LTR8A LTR ERV1 1 727 0 5067 234 31 35 chrX 33679463 33680529 -143293611 - L1M4 LINE L1 -2108 4038 2978 1982 147 37 0 chrX 33680529 33680855 -143293285 - L1MB4 LINE L1 -6 6174 5837 5067 234 31 35 chrX 33680855 33681344 -143292796 - L1M4 LINE L1 -3168 2978 2489 212 29 0 59 chrX 33681802 33681836 -143292304 + (TATG)n Simple_repeat Simple_repeat 2 33 0 2409 88 0 0 chrX 33681921 33682218 -143291922 - AluSc SINE Alu -12 297 1 977 277 49 20 chrX 33682433 33682819 -143291321 + MLT1G3 LTR MaLR 5 467 -128 1853 200 118 35 chrX 33682858 33683309 -143290831 + MER77 LTR ERV1 114 601 -4 439 223 91 25 chrX 33683319 33683440 -143290700 + MLT1G3 LTR MaLR 421 549 0 200 310 14 28 chrX 33683484 33683555 -143290585 + L2 LINE L2 3199 3268 -4 356 252 136 39 chrX 33683793 33683948 -143290192 + MIR SINE MIR 51 220 -42 1140 333 104 29 chrX 33684948 33685283 -143288857 + L3 LINE CR1 722 1030 -547 1967 156 0 3 chrX 33685283 33685571 -143288569 - AluJo SINE Alu -25 287 1 1140 333 104 29 chrX 33685571 33686030 -143288110 + L3 LINE CR1 1030 1576 -1 1650 210 133 26 chrX 33686202 33686631 -143287509 - MLT1D LTR MaLR -26 479 5 483 328 74 12 chrX 33686727 33686971 -143287169 + MIR SINE MIR 2 260 -2 343 361 9 0 chrX 33687049 33687157 -143286983 - L2 LINE L2 -10 3262 3154 1225 226 9 0 chrX 33687475 33687705 -143286435 - LTR16C LTR ERVL -3 488 257 232 233 133 0 chrX 33687752 33687812 -143286328 - LTR16C LTR ERVL -348 143 76 12658 145 24 28 chrX 33688037 33688389 -143285751 + L1MA8 LINE L1 2872 3224 -2922 2369 98 3 9 chrX 33688389 33688704 -143285436 + AluSq SINE Alu 1 313 0 12658 145 24 28 chrX 33688704 33689085 -143285055 + L1MA8 LINE L1 3224 3605 -2541 3038 137 9 0 chrX 33689085 33689508 -143284632 + MSTA LTR MaLR 1 427 -1 12658 145 24 28 chrX 33689508 33691112 -143283028 + L1MA8 LINE L1 3605 5199 -947 1589 132 32 12 chrX 33691112 33691362 -143282778 + MER4D LTR ERV1 1 255 -617 242 157 0 20 chrX 33692638 33692689 -143281451 + (TTA)n Simple_repeat Simple_repeat 2 51 0 4464 107 1 39 chrX 33693166 33693839 -143280301 + MER4D LTR ERV1 225 872 0 5965 148 15 22 chrX 33693839 33693981 -143280159 + L1MA8 LINE L1 5196 5337 -954 2705 82 35 16 chrX 33693981 33694349 -143279791 - THE1C LTR MaLR 0 375 1 5965 148 15 22 chrX 33694349 33695304 -143278836 + L1MA8 LINE L1 5337 6291 0 470 333 7 7 chrX 33695592 33695736 -143278404 - MIR SINE MIR -117 145 2 260 290 53 30 chrX 33695884 33696015 -143278125 + L2 LINE L2 3139 3272 0 339 197 0 0 chrX 33696557 33696618 -143277522 + L2 LINE L2 3251 3311 -2 2619 17 0 3 chrX 33696785 33697075 -143277065 - AluY SINE Alu -22 289 1 2370 224 66 19 chrX 33697496 33698014 -143276126 + MLT1F LTR MaLR 1 542 0 339 270 52 33 chrX 33698144 33698341 -143275799 + MIR SINE MIR 6 260 -2 3405 186 38 15 chrX 33698474 33699152 -143274988 - L1MB8 LINE L1 -13 6165 5472 3150 219 78 44 chrX 33699152 33700098 -143274042 - L1MB8 LINE L1 -1379 4767 3790 501 183 5 115 chrX 33700106 33700314 -143273826 - L1MB8 LINE L1 -3456 2690 2506 361 189 95 0 chrX 33700331 33700405 -143273735 + MLT1D LTR MaLR 5 85 -420 228 304 163 11 chrX 33700598 33700690 -143273450 + MIR SINE MIR 37 142 -66 5287 202 16 24 chrX 33701345 33701960 -143272180 - MER45B DNA AcHobo -546 1035 417 2228 101 3 0 chrX 33701960 33702256 -143271884 - AluSx SINE Alu -15 297 1 5287 202 16 24 chrX 33702256 33702291 -143271849 - MER45B DNA AcHobo -1164 417 383 2186 115 0 0 chrX 33702291 33702586 -143271554 + AluSx SINE Alu 1 295 -17 5287 202 16 24 chrX 33702586 33702977 -143271163 - MER45B DNA AcHobo -1198 383 1 2438 70 7 0 chrX 33703217 33703516 -143270624 + AluY SINE Alu 2 302 -9 2246 143 65 0 chrX 33703516 33703902 -143270238 - L1M4 LINE L1 -469 6207 5797 8033 24 8 310 chrX 33703902 33705834 -143268306 - SVA Other Other 0 1386 38 450 0 0 0 chrX 33705838 33705888 -143268252 + (GGGAGA)n Simple_repeat Simple_repeat 6 55 0 222 244 0 24 chrX 33705930 33706012 -143268128 + T-rich Low_complexity Low_complexity 2 81 0 1871 204 27 2 chrX 33706038 33706444 -143267696 - L1M4 LINE L1 -1736 4908 4493 1725 162 196 40 chrX 33706458 33706932 -143267208 - LTR10A LTR ERV1 -61 548 1 1142 195 6 88 chrX 33706939 33707196 -143266944 - L1M4 LINE L1 -2160 4484 4256 2159 120 16 0 chrX 33707196 33707504 -143266636 - AluSq SINE Alu 0 313 1 1142 195 6 88 chrX 33707504 33707564 -143266576 - L1M4 LINE L1 -2388 4256 4193 1591 200 11 7 chrX 33707565 33707850 -143266290 - L1M4 LINE L1 -5589 953 668 2619 215 15 71 chrX 33707882 33708270 -143265870 - L1M4 LINE L1 -5863 679 348 2153 95 0 70 chrX 33708270 33708585 -143265555 - AluSg SINE Alu -17 293 1 2619 215 15 71 chrX 33708585 33708912 -143265228 - L1M4 LINE L1 -6194 348 4 2370 91 0 7 chrX 33709137 33709445 -143264695 - AluSg SINE Alu -4 306 1 1682 262 78 15 chrX 33709669 33710131 -143264009 - LTR16C LTR ERVL 0 491 1 352 290 72 57 chrX 33711558 33711751 -143262389 + MIR SINE MIR 11 206 -56 188 150 50 0 chrX 33712136 33712176 -143261964 - MIR3 SINE MIR -1 207 166 184 231 26 0 chrX 33712207 33712246 -143261894 - L3 LINE CR1 -143 1434 1395 226 241 17 0 chrX 33712288 33712346 -143261794 + MIR SINE MIR 134 192 -70 890 292 159 23 chrX 33712713 33713186 -143260954 - L3 LINE CR1 -638 939 403 199 262 60 24 chrX 33713443 33713527 -143260613 - L3 LINE CR1 -1164 413 327 2007 137 3 3 chrX 33713608 33713901 -143260239 + AluSp SINE Alu 3 295 -18 471 275 43 24 chrX 33713901 33714112 -143260028 - L1ME LINE L1 -309 5812 5598 348 284 131 55 chrX 33714115 33714351 -143259789 - L1ME LINE L1 -555 5566 5313 458 270 103 64 chrX 33714511 33714870 -143259270 + L1M4 LINE L1 4943 5315 -831 34 72 0 0 chrX 33715491 33715560 -143258580 + AT_rich Low_complexity Low_complexity 1 69 0 380 277 99 29 chrX 33715606 33715848 -143258292 - L2 LINE L2 -1265 2049 1791 2518 69 0 3 chrX 33715853 33716157 -143257983 - AluSp SINE Alu -10 303 1 432 262 10 0 chrX 33716261 33716364 -143257776 + L2 LINE L2 3197 3300 -13 2740 204 68 72 chrX 33716928 33717758 -143256382 + LTR1B LTR ERV1 1 826 0 890 203 43 6 chrX 33717919 33718082 -143256058 + MER58A DNA MER1_type 42 210 -14 473 212 267 79 chrX 33718101 33718160 -143255980 + LTR16A1 LTR ERVL 2 49 -408 6861 48 0 13 chrX 33718160 33718950 -143255190 + LTR17 LTR ERV1 1 780 0 473 212 267 79 chrX 33718950 33719268 -143254872 + LTR16A1 LTR ERVL 49 450 -7 359 193 0 0 chrX 33719476 33719533 -143254607 + MER2 DNA MER2_type 1 57 -288 344 98 82 16 chrX 33720491 33720544 -143253596 - LTR23 LTR ERV1 0 437 381 312 130 0 0 chrX 33720544 33720590 -143253550 + Alu SINE Alu 1 46 -256 321 169 70 104 chrX 33720610 33720802 -143253338 - LTR23 LTR ERV1 -6 439 249 913 193 39 6 chrX 33720877 33721058 -143253082 + LTR8 LTR ERV1 10 196 -495 2845 171 27 63 chrX 33721079 33721714 -143252426 - LTR9 LTR ERV1 0 612 2 * 3630 110 79 22 chrX 33721714 33722297 -143251843 - MER41B LTR ERV1 -19 616 1 2310 175 19 86 chrX 33722297 33722333 -143251807 + LTR8 LTR ERV1 191 228 -463 3101 170 98 50 chrX 33722333 33723027 -143251113 + LTR8A LTR ERV1 1 727 0 2310 175 19 86 chrX 33723027 33723527 -143250613 + LTR8 LTR ERV1 228 691 0 476 191 0 12 chrX 33723527 33723609 -143250531 - LTR56 LTR ERV1 -340 105 25 224 271 0 33 chrX 33724529 33724621 -143249519 + CT-rich Low_complexity Low_complexity 1 88 0 4652 100 9 2 chrX 33725413 33726043 -143248097 + LTR24C LTR ERV1 1 635 0 217 268 28 14 chrX 33726754 33726825 -143247315 + CT-rich Low_complexity Low_complexity 4 75 0 384 22 0 0 chrX 33727274 33727319 -143246821 + (TG)n Simple_repeat Simple_repeat 2 46 0 2252 94 129 43 chrX 33727771 33727812 -143246328 - MSTA LTR MaLR 0 428 392 2284 115 7 0 chrX 33727812 33728116 -143246024 + AluSq SINE Alu 1 306 -7 2252 94 129 43 chrX 33728116 33728468 -143245672 - MSTA LTR MaLR -36 392 1 242 138 0 121 chrX 33729259 33729317 -143244823 + MER119 DNA MER1_type 127 177 -406 1980 143 3 0 chrX 33729319 33729605 -143244535 - AluJo SINE Alu -11 301 15 2258 177 2 2 chrX 33729624 33730037 -143244103 + MER119 DNA MER1_type 171 583 0 761 173 24 0 chrX 33730089 33730216 -143243924 - FLAM_A SINE Alu -3 130 1 1725 293 103 27 chrX 33730217 33730465 -143243675 + L2 LINE L2 2228 2456 -857 1275 181 9 0 chrX 33730465 33730686 -143243454 - MER58A DNA MER1_type -1 223 1 1725 293 103 27 chrX 33730686 33731455 -143242685 + L2 LINE L2 2456 3304 -9 261 0 0 0 chrX 33731455 33731484 -143242656 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 839 291 62 34 chrX 33731491 33731993 -143242147 - LTR33 LTR ERVL -1 520 5 2948 20 6 0 chrX 33732311 33732657 -143241483 - L1PA4 LINE L1 -2 6153 5806 1611 220 141 17 chrX 33733126 33733608 -143240532 - MLT1F LTR MaLR 0 542 1 284 289 0 40 chrX 33733864 33733940 -143240200 - MER5A DNA MER1_type -3 186 114 * 386 264 208 8 chrX 33733889 33734014 -143240126 + MER5B DNA MER1_type 27 176 -2 317 263 170 24 chrX 33734607 33734896 -143239244 + L1MCc LINE L1 34 364 -6059 2890 77 0 3 chrX 33735122 33735498 -143238642 - THE1C LTR MaLR 0 375 1 1693 257 77 25 chrX 33735571 33736085 -143238055 + L1MCc LINE L1 818 1304 -5637 5066 91 15 1 chrX 33736085 33736764 -143237376 + LTR12 LTR ERV1 1 688 0 1693 257 77 25 chrX 33736764 33737688 -143236452 + L1MCc LINE L1 1304 2436 -4505 706 184 29 29 chrX 33737688 33737789 -143236351 - L1M4 LINE L1 -846 5300 5200 2503 87 0 0 chrX 33737789 33738098 -143236042 - AluSg SINE Alu -1 309 1 706 184 29 29 chrX 33738098 33738203 -143235937 - L1M4 LINE L1 -945 5201 5094 * 3367 224 36 30 chrX 33738202 33738703 -143235437 - L1M4 LINE L1 -2060 4086 3589 2282 74 11 0 chrX 33738703 33738988 -143235152 + AluSp SINE Alu 1 288 -25 311 0 26 0 chrX 33738992 33739031 -143235109 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 3367 224 36 30 chrX 33739031 33739560 -143234580 - L1M4 LINE L1 -2559 3587 3042 2182 123 3 13 chrX 33739560 33739869 -143234271 - AluSx SINE Alu -6 306 1 3367 224 36 30 chrX 33739869 33739951 -143234189 - L1M4 LINE L1 -3104 3042 2962 11355 106 62 139 chrX 33739961 33740292 -143233848 - Tigger1 DNA MER2_type 0 2418 2063 2207 136 0 0 chrX 33740292 33740602 -143233538 - AluSx SINE Alu -2 310 1 11355 106 62 139 chrX 33740602 33741227 -143232913 - Tigger1 DNA MER2_type -355 2063 1391 2227 121 0 0 chrX 33741227 33741534 -143232606 - AluSc SINE Alu -2 307 1 11355 106 62 139 chrX 33741534 33742999 -143231141 - Tigger1 DNA MER2_type -1027 1391 211 210 37 0 0 chrX 33742999 33743026 -143231114 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 11355 106 62 139 chrX 33743026 33743222 -143230918 - Tigger1 DNA MER2_type -2207 211 1 1376 190 95 3 chrX 33743222 33743612 -143230528 - L1M4 LINE L1 -3193 2953 2528 * 3016 218 15 12 chrX 33743611 33744368 -143229772 + L1MC4a LINE L1 6149 6356 -3 2591 55 0 3 chrX 33744905 33745217 -143228923 + AluY SINE Alu 1 311 0 300 281 66 54 chrX 33745301 33745468 -143228672 - MIR SINE MIR -59 203 35 1585 163 41 58 chrX 33745850 33746145 -143227995 - AluJo SINE Alu -20 292 3 300 143 0 0 chrX 33746361 33746417 -143227723 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 2602 39 0 16 chrX 33746458 33746770 -143227370 - AluY SINE Alu -4 307 1 6429 118 26 15 chrX 33746914 33747630 -143226510 - L1MA4A LINE L1 -13 6290 5584 2186 112 6 16 chrX 33747630 33747943 -143226197 - AluSx SINE Alu 0 312 3 6429 118 26 15 chrX 33747943 33748934 -143225206 - L1MA4A LINE L1 -719 5584 4559 206 264 64 79 chrX 33748955 33749095 -143225045 - MIR SINE MIR -31 231 94 208 259 0 37 chrX 33749107 33749161 -143224979 + L2 LINE L2 3221 3272 0 283 253 11 58 chrX 33749217 33749304 -143224836 + MIR SINE MIR 3 85 -177 710 239 211 7 chrX 33749304 33749588 -143224552 - LTR33 LTR ERVL 0 521 180 554 286 101 0 chrX 33749601 33749769 -143224371 + MIR SINE MIR 29 213 -49 363 322 17 9 chrX 33750279 33750394 -143223746 + MIR SINE MIR 33 148 -114 1194 159 4 62 chrX 33750416 33750642 -143223498 + AluJo SINE Alu 87 299 -13 250 80 40 0 chrX 33751093 33751143 -143222997 + A-rich Low_complexity Low_complexity 1 52 0 304 328 45 22 chrX 33751466 33751528 -143222612 + MIR SINE MIR 105 164 -98 2076 92 0 34 chrX 33751528 33751702 -143222438 - AluSx SINE Alu 0 310 149 315 0 0 0 chrX 33751702 33751737 -143222403 + (TA)n Simple_repeat Simple_repeat 2 36 0 2076 92 0 34 chrX 33751737 33751882 -143222258 - AluSx SINE Alu -161 149 1 304 328 45 22 chrX 33751882 33751952 -143222188 + MIR SINE MIR 164 241 -21 316 297 90 0 chrX 33752030 33752141 -143221999 + MIR SINE MIR 79 199 -63 525 146 91 9 chrX 33752622 33752732 -143221408 - L1MA10 LINE L1 -7 6327 6209 2337 196 79 36 chrX 33752733 33753587 -143220553 - L1ME1 LINE L1 -185 6050 5163 569 223 69 0 chrX 33753584 33753759 -143220381 - L1ME1 LINE L1 -2174 4041 3855 * 2850 154 42 20 chrX 33753760 33754587 -143219553 + MER54A LTR ERVL 1 644 0 6202 239 83 31 chrX 33754616 33754706 -143219434 - L1ME1 LINE L1 -2377 3838 3754 1926 164 15 50 chrX 33754706 33755109 -143219031 - MLT1B LTR MaLR -1 389 1 6202 239 83 31 chrX 33755109 33755778 -143218362 - L1ME1 LINE L1 -2461 3754 3121 2399 102 0 0 chrX 33755778 33756083 -143218057 + AluSx SINE Alu 1 305 -7 6202 239 83 31 chrX 33756083 33756519 -143217621 - L1ME1 LINE L1 -3094 3121 2709 3887 72 14 2 chrX 33756519 33757036 -143217104 - L1PA14 LINE L1 0 6161 5639 6202 239 83 31 chrX 33757036 33757301 -143216839 - L1ME1 LINE L1 -3506 2709 2459 1969 150 35 0 chrX 33757301 33757588 -143216552 - AluSx SINE Alu -15 297 1 6202 239 83 31 chrX 33757588 33758461 -143215679 - L1ME1 LINE L1 -3756 2459 1633 2209 117 0 10 chrX 33758461 33758769 -143215371 - AluSx SINE Alu -7 305 1 6202 239 83 31 chrX 33758769 33760089 -143214051 - L1ME1 LINE L1 -4582 1633 34 2163 239 56 18 chrX 33760344 33760913 -143213227 - MLT1E LTR MaLR 0 593 3 309 158 37 0 chrX 33760957 33761039 -143213101 + (TA)n Simple_repeat Simple_repeat 1 85 0 324 263 0 32 chrX 33761042 33761137 -143213003 + L1MC4 LINE L1 6612 6703 -1339 327 349 0 0 chrX 33761449 33761532 -143212608 - L2 LINE L2 -5 3267 3185 365 176 27 14 chrX 33761590 33761664 -143212476 + L2 LINE L2 3235 3309 -4 247 389 62 0 chrX 33762266 33762379 -143211761 - L2 LINE L2 0 3272 3153 342 248 0 7 chrX 33762384 33762496 -143211644 + MER91A DNA MER1_type 1 189 -1 403 283 184 42 chrX 33762960 33763172 -143210968 + MIR SINE MIR 21 262 0 295 271 12 65 chrX 33763360 33763438 -143210702 + L1M4 LINE L1 23 89 -6453 1939 77 106 0 chrX 33763438 33763712 -143210428 + AluSg1 SINE Alu 1 303 -6 295 271 12 65 chrX 33763712 33763803 -143210337 + L1M4 LINE L1 89 183 -6359 299 326 34 7 chrX 33763842 33763989 -143210151 + L1M4 LINE L1 369 519 -6027 3564 261 17 2 chrX 33764079 33765247 -143208893 + L1M4 LINE L1 3293 4478 -2166 4178 189 21 14 chrX 33765260 33765608 -143208532 - MER21B LTR ERV1 -6 857 513 2357 75 0 37 chrX 33765608 33765929 -143208211 + AluSq SINE Alu 1 309 -4 4178 189 21 14 chrX 33765929 33766389 -143207751 - MER21B LTR ERV1 -350 513 43 393 222 0 50 chrX 33766387 33766459 -143207681 - MER21B LTR ERV1 -769 94 27 * 423 0 0 0 chrX 33766459 33766506 -143207634 + (TG)n Simple_repeat Simple_repeat 2 48 0 393 222 0 50 chrX 33766506 33766532 -143207608 - MER21B LTR ERV1 -836 27 1 886 371 0 0 chrX 33766539 33766587 -143207553 + L1M4 LINE L1 4473 4457 -2187 2944 108 2 21 chrX 33766587 33766950 -143207190 + MSTA LTR MaLR 2 370 -58 234 0 0 0 chrX 33766950 33766976 -143207164 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2178 97 4 0 chrX 33766978 33767257 -143206883 - AluSg SINE Alu -30 280 1 2944 108 2 21 chrX 33767257 33767325 -143206815 + MSTA LTR MaLR 371 428 0 886 371 0 0 chrX 33767325 33767567 -143206573 + L1M4 LINE L1 4456 4740 -1904 2446 70 0 0 chrX 33767567 33767866 -143206274 + AluY SINE Alu 1 299 -12 2253 105 3 13 chrX 33767885 33768191 -143205949 + AluY SINE Alu 1 303 -8 258 81 0 0 chrX 33768191 33768228 -143205912 + (TA)n Simple_repeat Simple_repeat 1 37 0 512 110 0 0 chrX 33768255 33768328 -143205812 + AluSc SINE Alu 229 301 -8 3787 178 35 3 chrX 33768329 33769108 -143205032 + L1MB7 LINE L1 5290 6093 -91 880 192 19 0 chrX 33769108 33769307 -143204833 + AluJo SINE Alu 123 324 0 241 235 0 0 chrX 33769355 33769423 -143204717 + L1MB7 LINE L1 6117 6184 0 2386 94 3 3 chrX 33769563 33769872 -143204268 + AluSx SINE Alu 1 309 -3 313 291 78 0 chrX 33772385 33772488 -143201652 - L2 LINE L2 0 3272 3162 1450 264 58 10 chrX 33772803 33773216 -143200924 - LTR16A LTR ERVL 0 450 18 568 182 38 23 chrX 33773607 33773739 -143200401 - MER94 DNA DNA 0 134 1 342 300 0 33 chrX 33773751 33773871 -143200269 + MARNA DNA Mariner 61 176 -410 4043 182 88 11 chrX 33776000 33776782 -143197358 - MER21B LTR ERV1 -21 842 1 921 212 10 25 chrX 33776834 33777032 -143197108 + LTR16A LTR ERVL 243 437 -13 2302 109 0 0 chrX 33777739 33778041 -143196099 - AluSq SINE Alu -11 302 1 2320 89 0 0 chrX 33778410 33778701 -143195439 - AluSx SINE Alu -6 306 16 378 0 0 0 chrX 33779307 33779349 -143194791 + (CA)n Simple_repeat Simple_repeat 2 43 0 9050 200 66 64 chrX 33779366 33781799 -143192341 - L1MC4a LINE L1 -3 7805 5366 375 105 0 0 chrX 33781799 33781856 -143192284 + (CA)n Simple_repeat Simple_repeat 2 58 0 9050 200 66 64 chrX 33781856 33781920 -143192220 - L1MC4a LINE L1 -2442 5366 5304 1073 148 0 0 chrX 33781939 33782110 -143192030 - AluSg/x SINE Alu 0 304 134 2432 73 0 3 chrX 33782110 33782410 -143191730 - AluY SINE Alu -12 299 1 23 68 0 0 chrX 33782410 33782454 -143191686 + AT_rich Low_complexity Low_complexity 1 44 0 951 283 89 38 chrX 33782516 33783379 -143190761 - L1MC4a LINE L1 -872 5274 4368 2462 207 30 42 chrX 33783410 33784032 -143190108 - L1ME1 LINE L1 -1 6234 5620 2433 144 54 0 chrX 33784044 33784434 -143189706 - MER61C LTR ERV1 -10 424 14 272 193 0 0 chrX 33784406 33784463 -143189677 - LTR28 LTR ERV1 -963 57 1 * 1189 205 11 19 chrX 33784466 33784709 -143189431 - L1ME1 LINE L1 -615 5620 5378 1701 156 27 27 chrX 33784709 33785010 -143189130 - AluJo SINE Alu -11 301 1 1189 205 11 19 chrX 33785010 33785034 -143189106 - L1ME1 LINE L1 -857 5378 5355 345 256 191 32 chrX 33785026 33785156 -143188984 - L1ME1 LINE L1 -1603 4612 4504 * 2281 105 3 0 chrX 33785156 33785452 -143188688 - AluSq SINE Alu -16 297 1 345 256 191 32 chrX 33785452 33785661 -143188479 - L1ME1 LINE L1 -1711 4504 4219 2366 153 20 112 chrX 33785661 33786205 -143187935 - MLT1D LTR MaLR -10 495 2 1668 276 69 16 chrX 33786209 33786716 -143187424 - L1ME1 LINE L1 -5827 569 36 290 186 0 51 chrX 33786815 33786874 -143187266 - L2 LINE L2 -16 3256 3201 265 296 31 41 chrX 33787305 33787403 -143186737 - MIR SINE MIR -132 130 34 212 271 120 90 chrX 33787941 33788074 -143186066 - L2 LINE L2 0 3272 3136 2318 119 72 78 chrX 33788263 33788724 -143185416 - MLT1C LTR MaLR -9 458 1 1231 291 71 3 chrX 33788724 33789116 -143185024 + LTR16A LTR ERVL 32 450 0 613 266 21 31 chrX 33789159 33789351 -143184789 - L2 LINE L2 -446 2868 2679 808 163 7 0 chrX 33789768 33789936 -143184204 + FRAM SINE Alu 35 176 0 635 194 9 0 chrX 33789939 33790154 -143183986 + GA-rich Low_complexity Low_complexity 1 216 0 247 375 47 23 chrX 33790216 33790344 -143183796 - MER102b DNA MER1_type -3 338 208 772 299 100 0 chrX 33790406 33790687 -143183453 + L2 LINE L2 2823 3131 -182 217 238 159 0 chrX 33790913 33790976 -143183164 + L2 LINE L2 3180 3252 -61 2277 103 3 12 chrX 33790989 33791318 -143182822 - LTR17 LTR ERV1 -454 326 1 2227 63 3 27 chrX 33791318 33791617 -143182523 - HERV17 LTR ERV1 0 8626 8335 335 23 91 0 chrX 33791607 33791651 -143182489 - HERV17 LTR ERV1 -1078 7548 7501 * 14923 53 3 0 chrX 33791642 33793825 -143180315 - HERV17 LTR ERV1 -1479 7147 3293 298 281 37 0 chrX 33793825 33793907 -143180233 + L2 LINE L2 3229 3313 0 415 267 76 9 chrX 33794741 33794846 -143179294 + MIR SINE MIR 17 128 -134 404 292 45 0 chrX 33795031 33795185 -143178955 - MER103 DNA DNA -5 161 1 23 54 0 0 chrX 33795418 33795455 -143178685 + AT_rich Low_complexity Low_complexity 1 37 0 314 315 88 42 chrX 33796440 33796656 -143177484 + L1ME1 LINE L1 7 232 -5887 569 320 62 59 chrX 33796890 33797568 -143176572 + L1ME1 LINE L1 578 1257 -4862 457 309 45 27 chrX 33797594 33797996 -143176144 + L1ME1 LINE L1 1328 1736 -4574 262 289 39 26 chrX 33798061 33798217 -143175923 + L1ME1 LINE L1 4240 4397 -1732 * 2762 118 9 41 chrX 33798214 33798308 -143175832 - L1MA6 LINE L1 -253 6047 5952 2177 109 7 0 chrX 33798308 33798601 -143175539 - AluSq SINE Alu -18 295 1 2762 118 9 41 chrX 33798601 33798947 -143175193 - L1MA6 LINE L1 -348 5952 5621 1633 101 18 0 chrX 33798947 33799172 -143174968 + L1MA6 LINE L1 6069 6300 0 2288 226 87 4 chrX 33799180 33799860 -143174280 + L1ME1 LINE L1 4383 5118 -1011 1211 157 5 0 chrX 33799869 33800066 -143174074 + L1PB1 LINE L1 3 200 -6663 4876 101 36 0 chrX 33800066 33801203 -143172937 + L1PB1 LINE L1 634 2049 -4814 16226 187 7 9 chrX 33802238 33807004 -143167136 + L1PB1 LINE L1 2046 6867 0 33 0 0 0 chrX 33807004 33807037 -143167103 + AT_rich Low_complexity Low_complexity 1 33 0 3679 228 41 24 chrX 33807037 33807783 -143166357 + L1ME1 LINE L1 5112 5844 -305 2306 130 19 35 chrX 33807783 33808153 -143165987 + THE1B LTR MaLR 1 364 0 12913 80 2 7 chrX 33808153 33809740 -143164400 + THE1B-int LTR MaLR 1 1580 0 2356 115 30 33 chrX 33809740 33810105 -143164035 + THE1B LTR MaLR 1 364 0 3679 228 41 24 chrX 33810105 33810358 -143163782 + L1ME1 LINE L1 5843 6130 -19 2116 106 11 0 chrX 33810800 33811116 -143163024 + AluSx SINE Alu 1 319 0 198 0 0 0 chrX 33811196 33811218 -143162922 + (A)n Simple_repeat Simple_repeat 1 22 0 261 208 49 28 chrX 33812450 33812594 -143161546 + (TTAA)n Simple_repeat Simple_repeat 2 148 0 1614 73 20 93 chrX 33813867 33814011 -143160129 + MER30 DNA MER1_type 1 121 -109 2532 68 10 0 chrX 33814011 33814318 -143159822 - AluSg SINE Alu 0 310 1 1614 73 20 93 chrX 33814318 33814421 -143159719 + MER30 DNA MER1_type 121 230 0 870 277 105 11 chrX 33815822 33816270 -143157870 + L1MC/D LINE L1 5308 5797 -2011 981 239 28 0 chrX 33816297 33816510 -143157630 + MER20 DNA MER1_type 1 219 0 210 71 0 0 chrX 33816590 33816618 -143157522 + (GA)n Simple_repeat Simple_repeat 2 29 0 1444 164 4 0 chrX 33816666 33816898 -143157242 + AluJb SINE Alu 72 304 -8 333 273 82 60 chrX 33816955 33817138 -143157002 - L1M4 LINE L1 -2367 3779 3593 230 312 150 16 chrX 33817297 33817544 -143156596 + L1MC4a LINE L1 5689 5968 -1840 206 151 0 38 chrX 33817827 33817842 -143156298 + GA-rich Low_complexity Low_complexity 3 17 -36 2361 92 10 0 chrX 33817842 33818147 -143155993 + AluSx SINE Alu 5 312 0 206 151 0 38 chrX 33818147 33818184 -143155956 + GA-rich Low_complexity Low_complexity 17 53 0 1900 141 34 0 chrX 33818783 33819080 -143155060 + AluJb SINE Alu 1 307 -5 23 0 0 0 chrX 33819384 33819407 -143154733 + AT_rich Low_complexity Low_complexity 1 23 0 328 286 95 16 chrX 33820864 33820990 -143153150 - L2 LINE L2 -1 3271 3136 428 288 159 0 chrX 33821041 33821204 -143152936 + MIR SINE MIR 60 248 -14 180 276 17 35 chrX 33823451 33823509 -143150631 + L2 LINE L2 3204 3260 -12 543 290 26 56 chrX 33825274 33825324 -143148816 - MIR SINE MIR -34 228 178 2297 96 3 0 chrX 33825324 33825616 -143148524 - AluSx SINE Alu -19 293 1 543 290 26 56 chrX 33825616 33825796 -143148344 - MIR SINE MIR -84 178 5 339 298 107 0 chrX 33825808 33825929 -143148211 - MIR3 SINE MIR -62 146 13 580 241 152 6 chrX 33825962 33826120 -143148020 - MER5A DNA MER1_type 0 189 9 318 67 0 0 chrX 33826201 33826246 -143147894 + (CA)n Simple_repeat Simple_repeat 2 46 0 318 277 139 15 chrX 33826268 33826405 -143147735 - MIR3 SINE MIR -36 172 19 236 216 34 57 chrX 33826878 33826966 -143147174 - MLT1J1 LTR MaLR -135 311 226 1600 186 118 17 chrX 33827567 33827922 -143146218 + MSTD LTR MaLR 6 396 0 1226 175 0 5 chrX 33827924 33828147 -143145993 + MSTD-int LTR MaLR 2 223 -1512 233 158 0 0 chrX 33828153 33828191 -143145949 - MSTA LTR MaLR -2 426 389 2044 138 0 10 chrX 33878718 33879016 -143095124 - AluJb SINE Alu -17 295 1 272 290 40 30 chrX 33879020 33879120 -143095020 + MIR SINE MIR 162 262 0 424 129 24 59 chrX 33879188 33879273 -143094867 + L1MC/D LINE L1 5710 5791 -542 1463 246 104 0 chrX 33879342 33879737 -143094403 + MLT1J2 LTR MaLR 7 442 -8 2032 148 0 7 chrX 33879892 33880195 -143093945 + AluJo SINE Alu 1 301 -11 1293 265 50 83 chrX 33880385 33881313 -143092827 - L1MC4 LINE L1 -1 8041 7145 314 287 113 22 chrX 33881742 33882062 -143092078 - L1MC4a LINE L1 -158 5963 5612 2399 60 0 11 chrX 33882068 33882379 -143091761 + AluY SINE Alu 1 308 0 518 264 139 10 chrX 33882574 33882775 -143091365 - MIR SINE MIR -6 256 30 321 186 0 0 chrX 33883669 33883739 -143090401 + GA-rich Low_complexity Low_complexity 1 70 0 2242 99 20 0 chrX 33883915 33884208 -143089932 + AluSg1 SINE Alu 1 299 -10 32 0 0 0 chrX 33884358 33884390 -143089750 + AT_rich Low_complexity Low_complexity 1 32 0 387 143 78 0 chrX 33884745 33884822 -143089318 + L1MA9 LINE L1 6196 6278 -34 216 135 0 0 chrX 33887309 33887346 -143086794 + (CAG)n Simple_repeat Simple_repeat 1 37 0 36 40 0 0 chrX 33887516 33887566 -143086574 + GC_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chrX 33887614 33887650 -143086490 + GC_rich Low_complexity Low_complexity 1 36 0 1064 235 140 60 chrX 33888998 33889233 -143084907 + MLT1G1 LTR MaLR 1 216 -379 2221 106 0 0 chrX 33889233 33889515 -143084625 + AluSx SINE Alu 1 282 -30 192 97 0 0 chrX 33889518 33889549 -143084591 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1064 235 140 60 chrX 33889549 33889858 -143084282 + MLT1G1 LTR MaLR 217 593 -2 299 313 42 42 chrX 33889994 33890186 -143083954 + L1ME1 LINE L1 329 520 -5876 1756 176 0 17 chrX 33890610 33890905 -143083235 + AluJo SINE Alu 1 290 -22 2714 212 70 34 chrX 33891117 33891586 -143082554 + L1ME1 LINE L1 748 1198 -5208 2261 112 3 0 chrX 33891586 33891882 -143082258 + AluSg SINE Alu 1 297 -13 2714 212 70 34 chrX 33891882 33892445 -143081695 + L1ME1 LINE L1 1198 1770 -4636 5601 217 29 68 chrX 33892498 33893295 -143080845 + L1ME1 LINE L1 3935 4761 -1665 2087 120 17 0 chrX 33893295 33893587 -143080553 - AluSx SINE Alu -15 297 1 5601 217 29 68 chrX 33893587 33894926 -143079214 + L1ME1 LINE L1 4761 5939 -487 2299 117 0 0 chrX 33894926 33895226 -143078914 - AluSx SINE Alu -12 300 1 5601 217 29 68 chrX 33895226 33895690 -143078450 + L1ME1 LINE L1 5939 6420 -6 2225 116 3 0 chrX 33895906 33896209 -143077931 + AluSx SINE Alu 1 304 -8 700 227 92 26 chrX 33896278 33896550 -143077590 + LTR33A LTR ERVL 289 522 -1 585 283 57 28 chrX 33896697 33896909 -143077231 + MLT1I LTR MaLR 1 218 -191 242 327 77 18 chrX 33897056 33897224 -143076916 + L2 LINE L2 2871 3048 -224 1946 107 14 35 chrX 33897279 33897568 -143076572 - AluSx SINE Alu -21 291 9 291 182 18 0 chrX 33897758 33897813 -143076327 + L2 LINE L2 3217 3272 0 24 53 0 0 chrX 33897822 33897860 -143076280 + AT_rich Low_complexity Low_complexity 1 38 0 47 86 0 0 chrX 33898180 33898297 -143075843 + AT_rich Low_complexity Low_complexity 1 117 0 390 225 0 0 chrX 33899518 33899589 -143074551 - MLT1J LTR MaLR -331 180 110 1758 169 136 7 chrX 33899845 33900186 -143073954 + L1MB5 LINE L1 5803 6174 0 922 261 60 108 chrX 33900321 33900394 -143073746 + MLT1J LTR MaLR 1 76 -435 2487 87 3 0 chrX 33900394 33900705 -143073435 + AluSx SINE Alu 1 312 0 922 261 60 108 chrX 33900705 33901168 -143072972 + MLT1J LTR MaLR 76 511 0 5834 134 6 7 chrX 33901324 33902425 -143071715 + L1MB1 LINE L1 5067 6168 0 1644 190 74 36 chrX 33902631 33902779 -143071361 - MLT1B LTR MaLR -11 379 238 2388 99 0 0 chrX 33902779 33903073 -143071067 - AluSx SINE Alu -18 294 1 1644 190 74 36 chrX 33903073 33903288 -143070852 - MLT1B LTR MaLR -152 238 2 1467 207 81 83 chrX 33903535 33903993 -143070147 - MLT1H LTR MaLR -2 547 91 291 122 0 0 chrX 33903998 33904047 -143070093 + (TTCC)n Simple_repeat Simple_repeat 4 52 0 1105 83 0 18 chrX 33904048 33904217 -143069923 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 1783 101 10 95 chrX 33904217 33904523 -143069617 - AluSx SINE Alu -32 280 1 228 133 0 0 chrX 33904523 33904553 -143069587 - MLT1H LTR MaLR -446 103 74 3422 129 36 91 chrX 33904754 33904866 -143069274 + MER41B LTR ERV1 1 118 -517 2310 95 7 0 chrX 33904866 33905162 -143068978 + AluSq SINE Alu 1 298 -15 3422 129 36 91 chrX 33905162 33905624 -143068516 + MER41B LTR ERV1 118 535 -100 1970 124 7 3 chrX 33905624 33905906 -143068234 - AluSq SINE Alu 0 313 31 3422 129 36 91 chrX 33905906 33906002 -143068138 + MER41B LTR ERV1 535 635 0 582 259 84 63 chrX 33906275 33906627 -143067513 + L2 LINE L2 2922 3284 -29 3330 68 35 11 chrX 33906627 33907081 -143067059 + MER4C LTR ERV1 1 465 0 582 259 84 63 chrX 33907081 33907107 -143067033 + L2 LINE L2 3284 3308 -5 1712 155 7 18 chrX 33907203 33907481 -143066659 + AluJb SINE Alu 1 275 -37 829 254 35 5 chrX 33907555 33907752 -143066388 + MIR SINE MIR 5 207 -55 616 24 0 24 chrX 33907904 33907988 -143066152 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 2112 127 0 0 chrX 33907988 33908271 -143065869 - AluSx SINE Alu -29 283 1 278 203 0 17 chrX 33908435 33908494 -143065646 - MLT1K LTR MaLR 0 588 531 876 268 100 48 chrX 33908538 33908959 -143065181 + LTR16A LTR ERVL 8 450 0 2444 168 28 76 chrX 33908967 33909544 -143064596 - MLT2B3 LTR ERVL -4 550 2 701 270 50 67 chrX 33909571 33909930 -143064210 - MLT1K LTR MaLR -109 479 127 1571 194 17 7 chrX 33910288 33910576 -143063564 + AluJb SINE Alu 1 291 -21 1720 144 18 89 chrX 33911067 33911394 -143062746 - AluJb SINE Alu -8 304 1 2437 87 3 0 chrX 33911744 33912043 -143062097 + AluSp SINE Alu 3 302 -11 32 0 0 0 chrX 33912275 33912307 -143061833 + AT_rich Low_complexity Low_complexity 1 32 0 1063 125 51 0 chrX 33912308 33912484 -143061656 - L1PB4 LINE L1 -12 6144 5960 909 150 0 92 chrX 33912896 33913069 -143061071 + FRAM SINE Alu 1 157 -9 1643 121 152 0 chrX 33913093 33913350 -143060790 + AluJb SINE Alu 1 296 -16 1458 159 12 0 chrX 33913471 33913723 -143060417 + L1MA8 LINE L1 6033 6287 -4 3625 98 74 53 chrX 33913832 33914076 -143060064 + L1MC1 LINE L1 5663 5900 -433 2319 97 3 0 chrX 33914076 33914376 -143059764 + AluSp SINE Alu 1 301 -12 3625 98 74 53 chrX 33914376 33914751 -143059389 + L1MC1 LINE L1 5900 6295 -38 849 119 0 0 chrX 33914751 33914869 -143059271 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chrX 33914871 33914894 -143059246 + AT_rich Low_complexity Low_complexity 1 23 0 583 159 19 234 chrX 33914905 33915064 -143059076 - L1M4 LINE L1 -2086 4060 3869 2209 100 0 4 chrX 33915064 33915345 -143058795 - AluSg SINE Alu -30 280 1 583 159 19 234 chrX 33915345 33915468 -143058672 - L1M4 LINE L1 -2277 3869 3868 2176 118 10 0 chrX 33915468 33915773 -143058367 - AluSx SINE Alu -4 308 1 583 159 19 234 chrX 33915773 33915848 -143058292 - L1M4 LINE L1 -2278 3868 3779 1042 220 57 29 chrX 33915873 33916223 -143057917 + L1M4 LINE L1 4120 4479 -1667 1298 273 47 41 chrX 33916412 33916753 -143057387 - MLT1H LTR MaLR -13 536 189 2213 98 19 7 chrX 33916753 33917060 -143057080 + AluSx SINE Alu 1 311 -1 1298 273 47 41 chrX 33917060 33917249 -143056891 - MLT1H LTR MaLR -360 189 3 2319 109 6 3 chrX 33917732 33918044 -143056096 - AluSq SINE Alu 0 313 1 1934 146 0 10 chrX 33918166 33918468 -143055672 + AluJb SINE Alu 1 299 -13 1368 301 39 5 chrX 33918814 33919226 -143054914 - LTR16A LTR ERVL 0 450 25 2155 125 0 3 chrX 33919322 33919617 -143054523 - AluSx SINE Alu -18 294 1 2177 89 10 26 chrX 33919825 33920127 -143054013 + AluSx SINE Alu 1 297 -15 2463 242 39 11 chrX 33920128 33920686 -143053454 + MLT1G LTR MaLR 17 590 0 248 258 155 0 chrX 33921908 33922005 -143052135 - MIR SINE MIR -99 163 52 1847 83 0 0 chrX 33922468 33922698 -143051442 - AluSg/x SINE Alu -4 306 77 1953 121 5 113 chrX 33922708 33922749 -143051391 - L1MB2 LINE L1 0 6171 6127 1545 157 34 44 chrX 33922749 33922942 -143051198 - AluJb SINE Alu -16 296 106 2135 104 0 4 chrX 33922942 33923221 -143050919 - AluSg SINE Alu -27 283 6 1545 157 34 44 chrX 33923221 33923321 -143050819 - AluJb SINE Alu -206 106 6 1953 121 5 113 chrX 33923321 33923443 -143050697 - L1MB2 LINE L1 -44 6127 5993 2422 101 0 0 chrX 33923443 33923749 -143050391 + AluSq SINE Alu 1 306 -7 1953 121 5 113 chrX 33923749 33924007 -143050133 - L1MB2 LINE L1 -178 5993 5836 2430 106 0 0 chrX 33924007 33924319 -143049821 - AluSq SINE Alu -1 312 1 1953 121 5 113 chrX 33924319 33924421 -143049719 - L1MB2 LINE L1 -335 5836 5725 2124 100 4 0 chrX 33924652 33924953 -143049187 - AluSx SINE Alu 0 302 1 2152 109 0 7 chrX 33925609 33925894 -143048246 - AluSx SINE Alu -29 283 1 37 23 0 0 chrX 33926297 33926341 -143047799 + AT_rich Low_complexity Low_complexity 1 44 0 2253 120 0 0 chrX 33926341 33926640 -143047500 + AluSx SINE Alu 1 299 -13 750 160 0 17 chrX 33926644 33926763 -143047377 - FLAM_C SINE Alu -16 117 1 2061 123 0 3 chrX 33926788 33927112 -143047028 - AluSx SINE Alu 0 323 1 2041 146 0 3 chrX 33927158 33927466 -143046674 + AluJo SINE Alu 1 307 -5 1922 149 3 27 chrX 33927626 33927922 -143046218 + AluSx SINE Alu 7 295 -17 2091 123 0 3 chrX 33927925 33928261 -143045879 + AluSp SINE Alu 1 335 0 208 186 198 35 chrX 33928531 33928617 -143045523 - MIR SINE MIR -18 244 145 1694 146 64 4 chrX 33928633 33928913 -143045227 - AluJo SINE Alu -15 297 1 315 272 160 0 chrX 33928997 33929122 -143045018 - MIR SINE MIR -112 150 6 2291 106 0 0 chrX 33929253 33929555 -143044585 + AluSp SINE Alu 1 302 -11 390 297 26 73 chrX 33929592 33929784 -143044356 + MLT1L LTR MaLR 1 183 -432 306 215 0 35 chrX 33929931 33930075 -143044065 + CT-rich Low_complexity Low_complexity 2 140 0 318 50 0 0 chrX 33930077 33930117 -143044023 + (CA)n Simple_repeat Simple_repeat 1 40 0 584 268 28 34 chrX 33930502 33930681 -143043459 - MER97a DNA MER1_type? -716 178 1 339 298 101 27 chrX 33930723 33930781 -143043359 - L1M4 LINE L1 -1314 4832 4780 592 200 200 15 chrX 33930781 33930916 -143043224 - FRAM SINE Alu -6 160 1 339 298 101 27 chrX 33930916 33931045 -143043095 - L1M4 LINE L1 -1366 4780 4631 32 0 0 0 chrX 33931173 33931205 -143042935 + AT_rich Low_complexity Low_complexity 1 32 0 2169 99 3 3 chrX 33931212 33931530 -143042610 - AluSg SINE Alu 0 318 1 1622 193 21 56 chrX 33931555 33931933 -143042207 + MLT1A1 LTR MaLR 1 365 0 2303 88 0 0 chrX 33931976 33932281 -143041859 - AluSq SINE Alu 0 305 1 592 274 116 9 chrX 33932391 33932606 -143041534 - L1MC4a LINE L1 -1834 5974 5737 496 185 0 67 chrX 33932624 33932743 -143041397 + L1ME1 LINE L1 5896 6006 -160 2166 96 0 46 chrX 33932766 33933068 -143041072 + AluSx SINE Alu 1 288 -24 284 258 0 0 chrX 33933069 33933135 -143041005 + L1MB7 LINE L1 6106 6171 -13 471 249 0 55 chrX 33933307 33933472 -143040668 + L2 LINE L2 3156 3311 -2 421 280 6 12 chrX 33933470 33933599 -143040541 - MER5A DNA MER1_type -41 139 8 * 979 216 104 49 chrX 33933687 33934177 -143039963 + MLT1H LTR MaLR 1 555 0 209 319 14 0 chrX 33934205 33934274 -143039866 + L2 LINE L2 2782 2851 -463 538 330 0 0 chrX 33934373 33934549 -143039591 + MIR SINE MIR 79 254 -8 335 213 113 81 chrX 33934562 33934722 -143039418 + L2 LINE L2 3149 3313 0 2362 98 0 0 chrX 33934932 33935239 -143038901 - AluSx SINE Alu -5 307 1 2235 108 7 16 chrX 33935248 33935555 -143038585 - AluSx SINE Alu -8 304 1 1729 176 3 19 chrX 33936214 33936526 -143037614 - AluJb SINE Alu -5 307 1 2128 137 0 0 chrX 33936547 33936847 -143037293 - AluSx SINE Alu -12 300 1 369 0 0 0 chrX 33936851 33936892 -143037248 + (TTG)n Simple_repeat Simple_repeat 2 42 0 559 238 14 7 chrX 33936920 33937067 -143037073 + L2 LINE L2 1793 1940 -1374 738 210 17 6 chrX 33937134 33937315 -143036825 - L1MD3 LINE L1 -1 7994 7812 2229 99 16 3 chrX 33937318 33937622 -143036518 + AluSq SINE Alu 1 308 -5 272 155 0 17 chrX 33937622 33937680 -143036460 + GA-rich Low_complexity Low_complexity 1 57 0 1491 187 102 67 chrX 33937784 33938186 -143035954 - L1MD2 LINE L1 -250 6109 5694 2973 175 35 10 chrX 33938187 33938876 -143035264 - L1ME LINE L1 -4767 1773 977 2149 115 41 44 chrX 33938876 33939241 -143034899 - THE1B LTR MaLR 0 364 1 2973 175 35 10 chrX 33939241 33939314 -143034826 - L1ME LINE L1 -5563 977 907 343 316 83 18 chrX 33939346 33939514 -143034626 - L1ME LINE L1 -5573 957 779 984 282 24 30 chrX 33939525 33939858 -143034282 - L1ME LINE L1 -6128 412 82 2056 138 0 0 chrX 33939863 33940161 -143033979 - AluJb SINE Alu -3 309 12 2031 290 98 6 chrX 33940280 33941202 -143032938 + L2 LINE L2 2127 3133 -180 676 268 170 53 chrX 33941202 33941309 -143032831 - MLT1H1 LTR MaLR 0 555 462 2320 94 3 0 chrX 33941309 33941607 -143032533 + AluSx SINE Alu 1 299 -13 676 268 170 53 chrX 33941607 33942023 -143032117 - MLT1H1 LTR MaLR -93 462 13 1901 158 0 0 chrX 33942069 33942386 -143031754 - AluJb SINE Alu 0 317 1 383 231 58 10 chrX 33942407 33942511 -143031629 + L2 LINE L2 3201 3309 -4 261 0 0 0 chrX 33942543 33942572 -143031568 + (CA)n Simple_repeat Simple_repeat 2 30 0 1666 160 32 21 chrX 33942671 33942953 -143031187 + AluJo SINE Alu 1 285 -27 2238 100 0 10 chrX 33943657 33943957 -143030183 + AluSq SINE Alu 1 297 -16 2277 115 0 10 chrX 33944788 33945101 -143029039 + AluSx SINE Alu 1 310 -2 2006 165 23 34 chrX 33945658 33946046 -143028094 - MLT1B LTR MaLR -3 387 4 1817 184 3 0 chrX 33946098 33946386 -143027754 - AluJo SINE Alu -23 289 1 668 250 121 0 chrX 33947041 33947265 -143026875 + MIR SINE MIR 12 262 0 22733 130 45 11 chrX 33947287 33949036 -143025104 + L1M1 LINE L1 1 1689 -5876 194 0 39 0 chrX 33949036 33949062 -143025078 + (GA)n Simple_repeat Simple_repeat 2 28 0 22733 130 45 11 chrX 33949062 33951065 -143023075 + L1M1 LINE L1 1689 3883 -3682 348 97 129 0 chrX 33951064 33951126 -143023014 + L1MA2 LINE L1 6046 6115 -189 * 2480 83 0 0 chrX 33951127 33951427 -143022713 - AluSq SINE Alu -13 300 1 363 189 27 0 chrX 33951428 33951502 -143022638 - L1ME LINE L1 -506 5615 5540 2172 181 136 51 chrX 33951849 33952158 -143021982 - REP3 LTR ERV 0 562 192 2078 133 0 10 chrX 33952158 33952492 -143021648 + AluSx SINE Alu 1 312 0 2172 181 136 51 chrX 33952492 33952690 -143021450 - REP3 LTR ERV -370 192 12 2021 129 0 14 chrX 33952734 33953029 -143021111 - AluJb SINE Alu -21 291 1 2211 103 3 28 chrX 33953077 33953300 -143020840 - AluSx SINE Alu 0 352 125 207 0 0 0 chrX 33953300 33953323 -143020817 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2050 131 3 0 chrX 33953323 33953605 -143020535 - AluSx SINE Alu -29 283 1 2211 103 3 28 chrX 33953605 33953740 -143020400 - AluSx SINE Alu -225 127 1 4787 148 8 14 chrX 33953747 33954443 -143019697 - L1 LINE L1 -1162 4984 4292 2015 149 0 13 chrX 33954443 33954752 -143019388 - AluJb SINE Alu -7 305 1 4787 148 8 14 chrX 33954752 33954902 -143019238 - L1 LINE L1 -1854 4292 4143 379 137 0 0 chrX 33955047 33955098 -143019042 - MER66A LTR ERV1 -142 336 286 430 261 29 71 chrX 33955344 33955526 -143018614 + MER69A DNA AcHobo 4 177 0 2204 81 7 21 chrX 33955604 33955889 -143018251 + AluSp SINE Alu 1 281 -32 1161 113 0 0 chrX 33955890 33956067 -143018073 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2272 107 0 0 chrX 33956553 33956898 -143017242 + AluSx SINE Alu 1 345 0 2260 101 0 16 chrX 33957067 33957375 -143016765 + AluSx SINE Alu 1 303 -9 374 132 0 15 chrX 33957379 33957447 -143016693 + (GGAA)n Simple_repeat Simple_repeat 2 68 0 2160 109 3 3 chrX 33957501 33957795 -143016345 - AluSc SINE Alu -15 294 1 2056 128 0 7 chrX 33957829 33958126 -143016014 + AluSx SINE Alu 1 295 -17 2515 84 0 0 chrX 33958126 33958434 -143015706 + AluSc SINE Alu 1 309 0 545 107 0 24 chrX 33959127 33959211 -143014929 + AluJo/FLAM SINE Alu 52 133 -179 * 699 188 14 29 chrX 33959207 33959345 -143014795 + AluJo SINE Alu 96 231 -81 217 150 0 25 chrX 33959361 33959401 -143014739 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1671 149 23 50 chrX 33959427 33959570 -143014570 + AluJo SINE Alu 1 146 -166 2121 122 20 0 chrX 33959570 33959864 -143014276 + AluJb SINE Alu 1 300 -12 1671 149 23 50 chrX 33959864 33960022 -143014118 + AluJo SINE Alu 146 294 -18 957 207 67 74 chrX 33960128 33960592 -143013548 + MLT1H1 LTR MaLR 9 595 0 2130 132 0 3 chrX 33960745 33961048 -143013092 - AluSx SINE Alu -10 302 1 248 297 63 27 chrX 33962027 33962138 -143012002 + MIR SINE MIR 17 131 -77 24 32 0 0 chrX 33962210 33962241 -143011899 + AT_rich Low_complexity Low_complexity 1 31 0 2478 92 0 0 chrX 33962456 33962760 -143011380 + AluSx SINE Alu 1 304 -8 231 250 83 14 chrX 33963203 33963275 -143010865 - L2 LINE L2 0 3272 3196 2503 63 0 0 chrX 33963308 33963607 -143010533 - AluSg SINE Alu -11 299 1 2341 63 0 50 chrX 33963620 33963937 -143010203 - AluSc SINE Alu -8 301 1 2433 66 7 3 chrX 33963965 33964269 -143009871 + AluSq SINE Alu 1 305 -8 1633 118 17 88 chrX 33964400 33964696 -143009444 + AluJo SINE Alu 5 279 -33 593 0 28 0 chrX 33964696 33964768 -143009372 + (GAAA)n Simple_repeat Simple_repeat 1 74 0 24 32 0 0 chrX 33967601 33967632 -143006508 + AT_rich Low_complexity Low_complexity 1 31 0 2014 156 0 0 chrX 33967636 33967944 -143006196 + AluJb SINE Alu 1 308 -4 2368 81 0 16 chrX 33968338 33968646 -143005494 - AluSx SINE Alu -9 303 1 1173 226 215 48 chrX 33969687 33970164 -143003976 - MLT1G1 LTR MaLR 0 595 1 421 95 0 0 chrX 33970212 33970275 -143003865 - L1MB8 LINE L1 -6 6172 6110 2057 119 14 7 chrX 33970296 33970581 -143003559 - AluSx SINE Alu -25 287 1 338 116 14 14 chrX 33970582 33970651 -143003489 - L1MA4 LINE L1 -248 6052 5984 1261 107 0 19 chrX 33970652 33970857 -143003283 + L1MA4 LINE L1 6094 6294 -6 3185 143 73 19 chrX 33970881 33971372 -143002768 - L1MB7 LINE L1 -57 6127 5597 2525 66 0 0 chrX 33971372 33971673 -143002467 - AluY SINE Alu -10 301 1 3185 143 73 19 chrX 33971673 33971767 -143002373 - L1MB7 LINE L1 -587 5597 5510 987 137 0 0 chrX 33972201 33972340 -143001800 - AluSq/x SINE Alu -174 139 1 21 57 0 0 chrX 33972468 33972503 -143001637 + AT_rich Low_complexity Low_complexity 1 35 0 7027 34 1 4 chrX 33972551 33973388 -143000752 - L1PA5 LINE L1 -6 6148 5316 4559 150 37 53 chrX 33973799 33974137 -143000003 - L1ME1 LINE L1 0 6166 5824 1869 156 3 10 chrX 33974137 33974432 -142999708 - AluJb SINE Alu -19 293 1 4559 150 37 53 chrX 33974432 33974674 -142999466 - L1ME1 LINE L1 -342 5824 5580 1919 142 6 22 chrX 33974674 33974990 -142999150 + AluJo SINE Alu 2 312 0 4559 150 37 53 chrX 33974990 33975098 -142999042 - L1ME1 LINE L1 -586 5580 5472 1683 155 7 27 chrX 33975098 33975395 -142998745 - AluJo SINE Alu -21 291 1 4559 150 37 53 chrX 33975395 33975800 -142998340 - L1ME1 LINE L1 -694 5472 5089 594 91 0 0 chrX 33975800 33975877 -142998263 - AluSc SINE Alu -14 295 219 329 195 0 13 chrX 33975878 33975955 -142998185 + (TA)n Simple_repeat Simple_repeat 1 76 0 286 293 0 14 chrX 33976023 33976170 -142997970 + (TA)n Simple_repeat Simple_repeat 2 146 0 245 214 0 0 chrX 33976170 33976226 -142997914 + L1MC4 LINE L1 6648 6703 -1339 * 265 194 0 42 chrX 33976195 33976267 -142997873 + L1MCa LINE L1 1996 2064 -4362 239 133 0 0 chrX 33976287 33976332 -142997808 - LTR66 LTR ERVL -172 438 394 615 219 45 19 chrX 33976333 33976488 -142997652 + MIR SINE MIR 83 241 -21 2432 81 3 0 chrX 33976740 33977050 -142997090 - AluSq SINE Alu -2 311 1 2053 136 0 3 chrX 33977113 33977408 -142996732 + AluJb SINE Alu 1 294 -18 1205 122 0 33 chrX 33977560 33977741 -142996399 - AluJb SINE Alu -18 294 120 456 256 33 25 chrX 33977792 33977913 -142996227 - FLAM_A SINE Alu -11 122 1 759 176 84 16 chrX 33978153 33978338 -142995802 + MLT1B LTR MaLR 1 188 -186 1167 122 17 6 chrX 33978413 33978585 -142995555 - MLT1A1 LTR MaLR -14 351 178 249 254 51 0 chrX 33979225 33979284 -142994856 + L2 LINE L2 3251 3312 -1 2266 105 3 0 chrX 33979721 33980016 -142994124 + AluSq SINE Alu 1 296 -17 2215 96 3 13 chrX 33980016 33980151 -142993989 + AluY SINE Alu 1 136 -175 1749 102 117 11 chrX 33980151 33980425 -142993715 + AluSc SINE Alu 1 303 -6 2215 96 3 13 chrX 33980425 33980591 -142993549 + AluY SINE Alu 136 299 -12 503 154 0 10 chrX 33980591 33980695 -142993445 + GA-rich Low_complexity Low_complexity 1 103 0 2155 126 0 0 chrX 33980940 33981249 -142992891 - AluSx SINE Alu -3 309 1 220 283 17 0 chrX 33981746 33981806 -142992334 + L2 LINE L2 3250 3310 -3 183 200 0 0 chrX 33982823 33982853 -142991287 - L2 LINE L2 -23 3290 3261 241 233 70 35 chrX 33982856 33982942 -142991198 + HsTC2 DNA Tc2 2 90 -1808 181 255 0 21 chrX 33982978 33983025 -142991115 - L2 LINE L2 -84 3229 3184 2183 109 0 10 chrX 33983138 33983432 -142990708 - AluSc SINE Alu -18 291 1 2329 88 3 0 chrX 33983839 33984133 -142990007 - AluSx SINE Alu -17 295 1 1080 226 33 0 chrX 33984783 33985026 -142989114 - MIR SINE MIR 0 262 12 2337 83 0 0 chrX 33985646 33985947 -142988193 + AluSg1 SINE Alu 1 301 -8 1832 150 3 11 chrX 33986841 33987127 -142987013 - AluJo SINE Alu -16 296 13 854 228 89 0 chrX 33987302 33987504 -142986636 + MIR SINE MIR 32 251 -11 1953 155 3 22 chrX 33987567 33987884 -142986256 + AluJo SINE Alu 1 311 -1 311 186 48 131 chrX 33987899 33988044 -142986096 - L1ME4a LINE L1 -246 5875 5743 210 342 132 9 chrX 33989660 33989774 -142984366 + L3 LINE CR1 1235 1362 -215 2354 221 125 84 chrX 33989819 33989929 -142984211 + L1MC4 LINE L1 6903 7007 -1035 1724 188 14 0 chrX 33989929 33990222 -142983918 + AluJo SINE Alu 1 297 -15 2354 221 125 84 chrX 33990222 33990458 -142983682 + L1MC4 LINE L1 7007 7232 -810 2192 98 11 0 chrX 33990458 33990744 -142983396 + AluSg SINE Alu 1 289 -21 2490 43 0 0 chrX 33990745 33991058 -142983082 + AluY SINE Alu 1 313 0 2354 221 125 84 chrX 33991058 33991802 -142982338 + L1MC4 LINE L1 7231 8042 0 1229 157 60 51 chrX 33991938 33992155 -142981985 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chrX 33992266 33992289 -142981851 + AT_rich Low_complexity Low_complexity 1 23 0 1941 116 36 4 chrX 33992396 33992672 -142981468 + AluJb SINE Alu 1 285 -27 788 183 0 0 chrX 33992710 33992841 -142981299 - AluJb SINE Alu -9 303 173 1426 169 0 0 chrX 33992858 33993077 -142981063 - AluJo SINE Alu -93 219 1 193 350 10 21 chrX 33993083 33993180 -142980960 + MER5A DNA MER1_type 68 163 -26 535 176 25 42 chrX 33993230 33993349 -142980791 - L2 LINE L2 -466 2848 2732 5844 189 148 75 chrX 33993349 33993883 -142980257 - L1MC3 LINE L1 0 7785 7292 414 264 0 0 chrX 33993883 33993974 -142980166 - MLT1F1 LTR MaLR -442 125 35 5844 189 148 75 chrX 33993974 33994014 -142980126 - L1MC3 LINE L1 -493 7292 7256 2369 75 7 3 chrX 33994014 33994306 -142979834 + AluSc SINE Alu 1 293 -16 5844 189 148 75 chrX 33994306 33995459 -142978681 - L1MC3 LINE L1 -529 7256 5810 2432 84 0 0 chrX 33995459 33995767 -142978373 - AluSx SINE Alu -4 308 1 5844 189 148 75 chrX 33995767 33995905 -142978235 - L1MC3 LINE L1 -1975 5810 5684 448 93 81 0 chrX 33995905 33995991 -142978149 - L1MB3 LINE L1 -1 6182 6090 2829 133 27 11 chrX 33996000 33996552 -142977588 - L1MA4 LINE L1 -272 6030 5428 326 150 0 0 chrX 33996549 33996609 -142977531 - L1MD3 LINE L1 0 7995 7936 * 1331 123 0 11 chrX 33996609 33996796 -142977344 + AluJo SINE Alu 1 185 -127 2310 89 3 7 chrX 33996869 33997173 -142976967 + AluSx SINE Alu 1 303 -9 1813 151 0 30 chrX 33997180 33997484 -142976656 + AluJb SINE Alu 1 295 -17 770 174 0 8 chrX 33997501 33997622 -142976518 + FLAM_C SINE Alu 6 125 -18 2190 66 63 3 chrX 33997661 33997948 -142976192 - AluSp SINE Alu -9 304 1 2539 60 3 0 chrX 33997973 33998273 -142975867 - AluSp SINE Alu -10 303 3 1148 160 55 5 chrX 33998275 33998475 -142975665 + MER82 DNA MER2_type 145 354 -299 1750 166 10 14 chrX 33998479 33998775 -142975365 - AluJo SINE Alu -17 295 1 874 132 0 0 chrX 33998798 33998919 -142975221 - FLAM_C SINE Alu -22 121 1 1590 195 24 10 chrX 33998921 33999219 -142974921 + MER82 DNA MER2_type 351 652 -1 460 176 11 0 chrX 33999228 33999319 -142974821 - L1M4 LINE L1 -3128 3018 2927 366 188 0 16 chrX 33999323 33999387 -142974753 + MER58A DNA MER1_type 30 92 -15 2397 73 37 0 chrX 33999388 33999688 -142974452 - AluSq SINE Alu -2 311 1 425 154 0 0 chrX 33999711 33999776 -142974364 + MER58A DNA MER1_type 160 224 0 2041 206 25 5 chrX 33999776 34000208 -142973932 - L1M4 LINE L1 -3206 2940 2500 1418 124 0 25 chrX 34050208 34050410 -142923730 - AluJb SINE Alu -115 197 1 1129 254 51 19 chrX 34050412 34050727 -142923413 - L1ME LINE L1 -402 5768 5444 1446 183 28 53 chrX 34050747 34051069 -142923071 - L1ME2 LINE L1 -9 6155 5842 1129 206 71 4 chrX 34051066 34051318 -142922822 + L1MD2 LINE L1 5686 5954 -405 * 2894 235 28 3 chrX 34051294 34051929 -142922211 - L1MB7 LINE L1 0 6578 5928 456 206 85 28 chrX 34051929 34052217 -142921923 - L1MB7 LINE L1 -3427 3113 1630 895 84 0 0 chrX 34052238 34052357 -142921783 - AluSx SINE Alu 0 310 192 328 114 0 0 chrX 34052358 34052402 -142921738 - AluSx SINE Alu -162 141 98 642 168 9 0 chrX 34052402 34052515 -142921625 + AluSc SINE Alu 132 245 -64 1719 86 5 0 chrX 34052517 34052737 -142921403 + AluSq SINE Alu 85 305 -8 451 263 0 0 chrX 34053666 34053765 -142920375 + MER5B DNA MER1_type 1 99 -79 3214 204 73 32 chrX 34053765 34054005 -142920135 - L1M4 LINE L1 -2929 3217 2988 2169 94 28 0 chrX 34054005 34054291 -142919849 - AluSq SINE Alu -19 294 1 3214 204 73 32 chrX 34054291 34054405 -142919735 - L1M4 LINE L1 -3158 2988 2880 2364 104 0 0 chrX 34054405 34054712 -142919428 - AluSx SINE Alu -5 307 1 3214 204 73 32 chrX 34054712 34055262 -142918878 - L1M4 LINE L1 -3266 2880 2275 1075 172 0 0 chrX 34055262 34055425 -142918715 - FRAM SINE Alu -20 156 1 226 188 62 0 chrX 34055515 34055563 -142918577 + L1MC4a LINE L1 7753 7803 -5 24 67 0 0 chrX 34055573 34055618 -142918522 + AT_rich Low_complexity Low_complexity 1 45 0 414 289 90 6 chrX 34056816 34056982 -142917158 - L3 LINE CR1 -63 1514 1335 307 228 251 39 chrX 34057051 34057310 -142916830 + L2 LINE L2 1713 2026 -1288 266 192 51 26 chrX 34057448 34057526 -142916614 + GA-rich Low_complexity Low_complexity 4 83 0 630 361 55 27 chrX 34057613 34058125 -142916015 + L2 LINE L2 2378 2903 -411 1150 168 59 5 chrX 34058926 34059129 -142915011 + MER58 DNA MER1_type 3 216 -125 2211 199 169 4 chrX 34059130 34059628 -142914512 - MLT1G LTR MaLR 0 590 11 1679 209 67 24 chrX 34059956 34060372 -142913768 + MLT1H LTR MaLR 114 547 -2 2049 111 0 0 chrX 34060726 34061006 -142913134 + AluSg SINE Alu 18 297 -13 522 127 13 0 chrX 34061016 34061095 -142913045 - MER116 DNA Mariner 0 80 1 3174 183 30 2 chrX 34063056 34063598 -142910542 - MER68 LTR ERV1 0 562 6 568 267 83 92 chrX 34064007 34064452 -142909688 + L2 LINE L2 2832 3272 0 410 289 132 26 chrX 34064583 34064773 -142909367 + MLT1K LTR MaLR 369 578 -10 314 326 52 15 chrX 34065115 34065250 -142908890 + L3 LINE CR1 253 392 -1185 445 290 351 15 chrX 34065353 34065811 -142908329 + L3 LINE CR1 583 1194 -383 469 323 101 4 chrX 34065820 34066068 -142908072 + L1ME3A LINE L1 5555 5826 -344 1244 265 86 8 chrX 34066079 34066430 -142907710 - MLT1I LTR MaLR -3 406 29 437 0 0 19 chrX 34066586 34066640 -142907500 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1724 157 27 10 chrX 34066731 34067024 -142907116 + AluJb SINE Alu 11 308 -4 291 230 26 18 chrX 34067031 34067144 -142906996 + GA-rich Low_complexity Low_complexity 1 114 0 1180 141 0 11 chrX 34067149 34067333 -142906807 + FRAM SINE Alu 1 176 0 2225 92 3 7 chrX 34067482 34067793 -142906347 + AluSx SINE Alu 1 312 0 371 321 9 19 chrX 34068046 34068152 -142905988 + L3 LINE CR1 1461 1565 -12 2372 116 0 0 chrX 34068991 34069302 -142904838 + AluSx SINE Alu 1 311 -1 239 277 62 54 chrX 34070291 34070421 -142903719 + L1ME LINE L1 328 458 -5938 2206 87 24 0 chrX 34070842 34071130 -142903010 - AluSx SINE Alu -17 295 1 1629 199 65 91 chrX 34071453 34071783 -142902357 + L1ME LINE L1 783 1089 -5320 717 236 0 0 chrX 34071783 34071906 -142902234 + FLAM_A SINE Alu 1 123 -10 1629 199 65 91 chrX 34071906 34072232 -142901908 + L1ME LINE L1 1089 1422 -4987 2179 98 7 3 chrX 34072245 34072541 -142901599 - AluSx SINE Alu -10 302 6 1673 175 0 3 chrX 34072641 34072938 -142901202 + AluY SINE Alu 1 296 -15 784 198 64 12 chrX 34073154 34073326 -142900814 + MER58B DNA MER1_type 1 181 -160 2180 121 3 0 chrX 34073326 34073623 -142900517 - AluSx SINE Alu -14 298 1 228 111 0 0 chrX 34073623 34073659 -142900481 - L1M4 LINE L1 -3175 2971 2936 2208 100 13 0 chrX 34073727 34074026 -142900114 - AluSx SINE Alu -9 303 1 1054 161 0 6 chrX 34074028 34074196 -142899944 + MER58B DNA MER1_type 175 341 0 2220 95 4 0 chrX 34074926 34075210 -142898930 + AluSp SINE Alu 1 284 -29 253 0 0 0 chrX 34075210 34075238 -142898902 + (CAAAA)n Simple_repeat Simple_repeat 2 95 0 2393 71 3 7 chrX 34075249 34075543 -142898597 + AluSx SINE Alu 1 293 -19 1132 164 36 36 chrX 34075995 34076214 -142897926 - MER20 DNA MER1_type 0 219 1 400 246 103 112 chrX 34076681 34076835 -142897305 - L1ME LINE L1 -303 5818 5665 2361 94 0 25 chrX 34076835 34077155 -142896985 - AluSx SINE Alu 0 312 1 400 246 103 112 chrX 34077155 34077224 -142896916 - L1ME LINE L1 -456 5665 5597 973 163 18 98 chrX 34078155 34078205 -142895935 - L1MA10 LINE L1 -29 6305 6253 2122 122 3 0 chrX 34078205 34078491 -142895649 + AluSx SINE Alu 1 287 -25 973 163 18 98 chrX 34078491 34078717 -142895423 - L1MA10 LINE L1 -81 6253 6051 508 211 77 0 chrX 34078769 34078925 -142895215 - LTR16A1 LTR ERVL -4 453 286 257 239 33 54 chrX 34079008 34079100 -142895040 - LTR16A1 LTR ERVL -347 110 21 239 321 52 76 chrX 34079127 34079240 -142894900 - L2 LINE L2 -30 3242 3128 1199 110 110 10 chrX 34079240 34079449 -142894691 + MER30 DNA MER1_type 1 230 0 239 321 52 76 chrX 34079449 34079821 -142894319 - L2 LINE L2 -144 3128 2773 271 295 0 13 chrX 34079908 34079986 -142894154 + MIR SINE MIR 67 143 -119 1861 189 32 12 chrX 34080663 34081001 -142893139 - L1MC/D LINE L1 -564 6489 6140 2502 82 7 0 chrX 34081001 34081307 -142892833 - AluSx SINE Alu -4 308 1 1861 189 32 12 chrX 34081307 34081412 -142892728 - L1MC/D LINE L1 -913 6140 6039 598 179 16 8 chrX 34081417 34081540 -142892600 - L1ME LINE L1 -748 5611 5488 255 208 78 0 chrX 34081553 34081630 -142892510 - L1MC/D LINE L1 -906 6051 5969 528 127 0 0 chrX 34081635 34081714 -142892426 - LTR23 LTR ERV1 -34 403 325 716 188 64 15 chrX 34081719 34081921 -142892219 - L1MC/D LINE L1 -974 5983 5772 1880 207 63 22 chrX 34081921 34082380 -142891760 + MLT1D LTR MaLR 26 503 -2 501 162 36 9 chrX 34082806 34082917 -142891223 - L1MB7 LINE L1 0 6184 6071 4011 188 149 103 chrX 34082925 34083955 -142890185 - L1MC/D LINE L1 -4803 2156 1175 1291 90 0 0 chrX 34083955 34084121 -142890019 - AluSq SINE Alu -12 301 136 4011 188 149 103 chrX 34084121 34085012 -142889128 - L1MC/D LINE L1 -5784 1175 4 2339 148 48 17 chrX 34086961 34087379 -142886761 + MSTB1 LTR MaLR 2 432 0 1518 251 42 40 chrX 34088042 34088516 -142885624 - MLT1E LTR MaLR 0 593 119 546 100 0 0 chrX 34088514 34088594 -142885546 - MLT1E LTR MaLR -427 166 87 * 298 333 6 57 chrX 34089229 34089388 -142884752 + MER5A DNA MER1_type 14 164 -25 321 275 132 54 chrX 34089422 34089589 -142884551 - MIR SINE MIR -74 188 9 2251 109 0 0 chrX 34089973 34090275 -142883865 - AluSg SINE Alu -8 302 1 4311 192 73 21 chrX 34090437 34091624 -142882516 - L1MDa LINE L1 -4477 2063 815 384 319 59 0 chrX 34091657 34091792 -142882348 - L1MDa LINE L1 -5819 721 579 1905 130 34 8 chrX 34091820 34092173 -142881967 - L1MB7 LINE L1 -9 6569 6208 330 115 0 0 chrX 34092173 34092225 -142881915 + (TCCC)n Simple_repeat Simple_repeat 1 52 0 2299 98 10 0 chrX 34092227 34092523 -142881617 - AluSp SINE Alu -14 299 1 1630 158 3 19 chrX 34092523 34092833 -142881307 - L1MB7 LINE L1 -356 6222 5918 367 267 52 64 chrX 34092841 34093092 -142881048 - L1MCb LINE L1 -5205 840 593 624 258 93 29 chrX 34093453 34093732 -142880408 - L1MCb LINE L1 -5683 362 66 320 170 0 10 chrX 34094168 34094241 -142879899 + Alu SINE Alu 1 47 -255 696 293 98 5 chrX 34095947 34096162 -142877978 - MIR SINE MIR -8 254 20 2498 70 0 0 chrX 34096168 34096467 -142877673 - AluY SINE Alu -12 299 1 2367 81 0 3 chrX 34097177 34097473 -142876667 - AluSc SINE Alu -14 295 1 1058 223 86 66 chrX 34097581 34098039 -142876101 - MLT1D LTR MaLR 0 467 1 1844 149 0 48 chrX 34098359 34098668 -142875472 + AluJb SINE Alu 1 294 -18 813 220 35 9 chrX 34098668 34098889 -142875251 + L1MD3 LINE L1 7751 7980 -15 1190 217 30 110 chrX 34099765 34099809 -142874331 - MSTD LTR MaLR 0 396 350 2026 115 0 21 chrX 34099809 34100135 -142874005 - AluSg SINE Alu 0 320 1 1190 217 30 110 chrX 34100135 34100517 -142873623 - MSTD LTR MaLR -46 350 3 506 68 45 0 chrX 34100536 34100624 -142873516 + (TA)n Simple_repeat Simple_repeat 1 92 0 215 311 0 27 chrX 34100939 34101013 -142873127 + L2 LINE L2 3201 3272 0 1923 157 7 7 chrX 34101684 34101989 -142872151 - AluSx SINE Alu -7 305 1 1050 194 21 11 chrX 34102346 34102532 -142871608 - MER5A DNA MER1_type 0 189 2 1230 264 26 14 chrX 34103021 34103445 -142870695 - L1MB7 LINE L1 -769 5771 5343 * 2109 218 21 37 chrX 34103441 34104293 -142869847 - L1MB7 LINE L1 -1409 5131 4197 920 131 124 9 chrX 34104296 34104582 -142869558 - MLT1A2 LTR MaLR -1 373 1 288 164 45 0 chrX 34104715 34104849 -142869291 + (TA)n Simple_repeat Simple_repeat 1 140 0 200 136 68 0 chrX 34104877 34104936 -142869204 + (TA)n Simple_repeat Simple_repeat 1 63 0 337 164 17 0 chrX 34104959 34105075 -142869065 + (TA)n Simple_repeat Simple_repeat 1 118 0 1842 156 0 3 chrX 34105081 34105364 -142868776 - AluJb SINE Alu -30 282 1 807 242 37 54 chrX 34105364 34105569 -142868571 - L1MB7 LINE L1 -2459 4081 3883 1741 173 20 10 chrX 34105569 34105870 -142868270 - AluJb SINE Alu -7 305 2 807 242 37 54 chrX 34105870 34106015 -142868125 - L1MB7 LINE L1 -2657 3883 3737 1955 211 86 26 chrX 34106048 34106374 -142867766 + L1MDa LINE L1 17 322 -6218 2102 138 13 0 chrX 34106374 34106679 -142867461 - AluSx SINE Alu -3 309 1 1955 211 86 26 chrX 34106679 34107323 -142866817 + L1MDa LINE L1 322 1246 -5294 3506 215 60 24 chrX 34107328 34107418 -142866722 - L1MB7 LINE L1 -2845 3695 3610 2038 122 0 50 chrX 34107418 34107738 -142866402 - AluJb SINE Alu -8 304 1 3506 215 60 24 chrX 34107738 34108109 -142866031 - L1MB7 LINE L1 -2930 3610 3254 928 143 0 0 chrX 34108109 34108242 -142865898 - FLAM_C SINE Alu 0 133 1 3506 215 60 24 chrX 34108242 34108946 -142865194 - L1MB7 LINE L1 -3286 3254 2480 441 0 0 0 chrX 34108946 34108995 -142865145 + (TG)n Simple_repeat Simple_repeat 2 50 0 3506 215 60 24 chrX 34108995 34109054 -142865086 - L1MB7 LINE L1 -4060 2480 2425 477 246 21 0 chrX 34109051 34109193 -142864947 + L1M4 LINE L1 3416 3560 -2586 * 3360 181 28 5 chrX 34109194 34109864 -142864276 + Tigger6a DNA MER2_type 398 1083 0 416 236 104 60 chrX 34109864 34110046 -142864094 + L1ME2 LINE L1 5949 6138 -26 1887 146 3 36 chrX 34110179 34110480 -142863660 + AluJb SINE Alu 1 291 -21 2068 170 0 0 chrX 34110751 34111063 -142863077 - AluJo SINE Alu 0 312 1 2225 78 44 0 chrX 34111360 34111654 -142862486 - AluSp SINE Alu -6 307 1 1070 174 26 0 chrX 34111668 34111858 -142862282 - L1MB7 LINE L1 -19 6165 5971 522 92 1 28 chrX 34111858 34111944 -142862196 - MLT1B LTR MaLR -1 389 315 207 100 0 0 chrX 34111944 34111974 -142862166 + (TC)n Simple_repeat Simple_repeat 2 31 0 1143 217 42 45 chrX 34111974 34112310 -142861830 - MLT1B LTR MaLR -55 335 1 3150 131 13 75 chrX 34112310 34112980 -142861160 - L1MB7 LINE L1 -208 5976 5348 1792 163 29 78 chrX 34113170 34113438 -142860702 - L1M LINE L1 -782 5364 5197 1909 168 3 0 chrX 34113438 34113729 -142860411 + AluJo SINE Alu 1 292 -20 1792 163 29 78 chrX 34113729 34114009 -142860131 - L1M LINE L1 -949 5197 4905 1842 166 3 14 chrX 34114156 34114452 -142859688 - AluJo SINE Alu -19 293 1 8211 104 38 21 chrX 34114565 34115841 -142858299 - HSMAR2 DNA Mariner -2 1300 3 2270 101 7 7 chrX 34116438 34116734 -142857406 + AluSx SINE Alu 1 296 -16 1146 131 25 0 chrX 34116859 34117019 -142857121 - AluJb SINE Alu -9 303 140 858 261 77 56 chrX 34117025 34117416 -142856724 - MLT1J2 LTR MaLR -47 403 5 195 306 0 0 chrX 34117446 34117495 -142856645 + L2 LINE L2 3160 3208 -64 771 289 43 8 chrX 34117567 34117802 -142856338 - MLT1H1 LTR MaLR -311 244 2 788 171 8 0 chrX 34117826 34117955 -142856185 - FLAM_A SINE Alu -1 132 3 994 227 34 65 chrX 34118940 34119231 -142854909 + L2 LINE L2 2260 2541 -773 2558 40 0 3 chrX 34119474 34119772 -142854368 - AluY SINE Alu -14 297 1 1643 232 86 12 chrX 34119830 34120357 -142853783 - MLT1G LTR MaLR -2 588 46 1071 171 0 0 chrX 34120524 34120688 -142853452 - FRAM SINE Alu -13 163 1 2346 101 0 0 chrX 34121187 34121484 -142852656 + AluSx SINE Alu 1 297 -15 2084 253 69 31 chrX 34121853 34121971 -142852169 - L1ME3A LINE L1 -5 6165 6053 1534 168 8 0 chrX 34121971 34122215 -142851925 + AluJo SINE Alu 1 246 -66 2084 253 69 31 chrX 34122215 34123187 -142850953 - L1ME3A LINE L1 -117 6053 5032 3179 71 41 5 chrX 34124249 34124687 -142849453 - L1PA11 LINE L1 -1 6173 5720 217 278 80 66 chrX 34124712 34124764 -142849376 - MIR SINE MIR -109 153 103 2315 91 3 3 chrX 34124764 34125072 -142849068 + AluSg SINE Alu 1 308 -2 217 278 80 66 chrX 34125072 34125170 -142848970 - MIR SINE MIR -159 103 1 1740 172 0 30 chrX 34125340 34125637 -142848503 + AluJo SINE Alu 1 288 -24 1402 112 45 41 chrX 34127435 34127704 -142846436 - L1MD3 LINE L1 0 7995 7726 618 333 15 0 chrX 34127839 34128034 -142846106 - MIR SINE MIR -18 244 47 235 247 282 12 chrX 34129730 34129815 -142844325 - MIR3 SINE MIR -10 198 91 362 321 87 69 chrX 34130146 34130594 -142843546 - L2 LINE L2 -1 3271 2816 181 171 146 0 chrX 34130650 34130691 -142843449 - L2 LINE L2 -586 2728 2682 1222 263 27 6 chrX 34130971 34131302 -142842838 + MER46C DNA MER2_type 1 338 0 2397 85 0 0 chrX 34131908 34132201 -142841939 + AluSg SINE Alu 1 293 -17 1753 169 38 0 chrX 34132732 34133022 -142841118 + AluJb SINE Alu 1 301 -11 704 198 115 0 chrX 34133371 34133528 -142840612 - MER58C DNA MER1_type -1 214 40 1192 206 135 32 chrX 34135285 34135702 -142838438 - L1ME2 LINE L1 -10 6154 5689 2248 61 0 50 chrX 34135726 34136052 -142838088 - AluY SINE Alu 0 311 1 1062 51 14 8 chrX 34136979 34137000 -142837140 - L1P LINE L1 -801 5355 5336 2084 136 0 3 chrX 34137000 34137301 -142836839 + AluJb SINE Alu 2 301 -11 1062 51 14 8 chrX 34137301 34137439 -142836701 - L1P LINE L1 -820 5336 5192 7730 8 0 1 chrX 34137439 34138259 -142835881 + L1PA2 LINE L1 5334 6153 -2 1575 130 91 75 chrX 34138641 34138779 -142835361 + AluJo SINE Alu 1 135 -177 5884 88 6 46 chrX 34138779 34139654 -142834486 - L1MA2 LINE L1 0 6304 5465 1575 130 91 75 chrX 34139654 34139822 -142834318 + AluJo SINE Alu 135 312 0 236 250 30 83 chrX 34140261 34140393 -142833747 + MARNA DNA Mariner 73 197 -389 * 358 252 0 28 chrX 34140327 34140434 -142833706 - MARNA DNA Mariner -138 448 345 2253 133 14 17 chrX 34140534 34140888 -142833252 - L1PA16 LINE L1 0 6166 5814 1691 113 74 12 chrX 34140888 34141143 -142832997 - L1PA15 LINE L1 0 6165 5893 3720 90 98 0 chrX 34141386 34141866 -142832274 + MER1A DNA MER1_type 1 527 0 755 221 6 6 chrX 34141881 34142039 -142832101 - L1MC5 LINE L1 -1114 6847 6690 214 333 58 81 chrX 34142199 34142373 -142831767 + L2 LINE L2 3103 3272 0 1648 141 52 38 chrX 34142531 34142821 -142831319 - AluJo SINE Alu -14 298 5 2083 108 28 3 chrX 34142821 34143108 -142831032 - AluSx SINE Alu -18 294 1 1290 179 9 22 chrX 34143115 34143344 -142830796 - AluJo SINE Alu 0 312 87 15678 135 31 10 chrX 34143740 34144676 -142829464 + L1MB7 LINE L1 1355 2269 -5296 2538 79 0 0 chrX 34144676 34144981 -142829159 + AluY SINE Alu 1 305 -6 15678 135 31 10 chrX 34144981 34147827 -142826313 + L1MB7 LINE L1 2269 5216 -2349 1166 168 5 0 chrX 34147824 34148021 -142826119 - L1 LINE L1 -2176 3970 3773 * 475 84 0 0 chrX 34148015 34148086 -142826054 + L1MA2 LINE L1 6130 6200 -104 * 552 242 0 0 chrX 34148189 34148284 -142825856 + AluJ/FLAM SINE Alu 2 96 -216 2276 110 0 7 chrX 34148403 34148712 -142825428 + AluSp SINE Alu 1 307 -6 1205 162 69 0 chrX 34148712 34148916 -142825224 + L1MB7 LINE L1 6851 7068 -535 2944 179 40 18 chrX 34148926 34149472 -142824668 - MER77 LTR ERV1 -7 598 41 2822 156 49 8 chrX 34149487 34149995 -142824145 + L1MB7 LINE L1 7065 7593 -10 30 45 0 0 chrX 34150124 34150168 -142823972 + AT_rich Low_complexity Low_complexity 1 44 0 2090 90 69 3 chrX 34150314 34150604 -142823536 - AluSg1 SINE Alu 0 309 1 1833 133 54 4 chrX 34150605 34150884 -142823256 - AluJb SINE Alu -19 293 1 1357 97 0 0 chrX 34150888 34151064 -142823076 - AluSg/x SINE Alu 0 310 135 1533 173 28 0 chrX 34151124 34151372 -142822768 - AluJo SINE Alu -57 255 1 1438 162 62 7 chrX 34151395 34151667 -142822473 - L1MA6 LINE L1 -4 6296 6010 210 344 159 0 chrX 34152126 34152283 -142821857 + L3 LINE CR1 1346 1527 -50 2270 93 0 17 chrX 34152648 34152949 -142821191 + AluSx SINE Alu 1 296 -16 2033 124 7 0 chrX 34152952 34153234 -142820906 + AluSx SINE Alu 1 284 -28 567 135 155 140 chrX 34153464 34153488 -142820652 + MER3 DNA MER1_type 7 29 -180 2255 113 0 7 chrX 34153488 34153798 -142820342 + AluSx SINE Alu 1 308 -4 567 135 155 140 chrX 34153798 34153912 -142820228 + MER3 DNA MER1_type 29 151 -58 2292 104 0 0 chrX 34153912 34154200 -142819940 + AluSx SINE Alu 1 288 -24 567 135 155 140 chrX 34154200 34154260 -142819880 + MER3 DNA MER1_type 151 209 0 753 122 0 0 chrX 34154281 34154379 -142819761 + AluJ/FLAM SINE Alu 5 102 -210 33 20 0 20 chrX 34154385 34154407 -142819733 + AT_rich Low_complexity Low_complexity 1 22 -28 1975 141 0 3 chrX 34154407 34154698 -142819442 - AluJb SINE Alu -22 290 1 33 20 0 20 chrX 34154698 34154726 -142819414 + AT_rich Low_complexity Low_complexity 22 50 0 1061 123 94 71 chrX 34156126 34156338 -142817802 - MER20 DNA MER1_type -1 218 2 553 219 34 27 chrX 34156571 34156717 -142817423 - MIR SINE MIR -26 236 90 356 321 107 0 chrX 34157771 34157911 -142816229 - L2 LINE L2 -1 3271 3117 264 137 0 0 chrX 34161103 34161154 -142812986 - L1ME3 LINE L1 -2 6160 6110 23 0 0 0 chrX 34162427 34162450 -142811690 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 0 chrX 34162851 34162886 -142811254 + (TC)n Simple_repeat Simple_repeat 2 36 0 1761 138 14 14 chrX 34163542 34163824 -142810316 - AluJo SINE Alu -18 294 13 938 118 0 22 chrX 34164733 34164868 -142809272 + FLAM_C SINE Alu 1 132 -1 440 273 43 19 chrX 34164945 34165106 -142809034 - MIR SINE MIR -9 253 89 704 144 0 0 chrX 34165453 34165557 -142808583 + MLT1D LTR MaLR 13 116 -510 1712 172 117 25 chrX 34165616 34165983 -142808157 + MLT1D LTR MaLR 105 505 0 223 287 213 0 chrX 34166315 34166465 -142807675 + L3 LINE CR1 1257 1438 -139 274 88 27 11 chrX 34166495 34166549 -142807591 + L1ME1 LINE L1 2593 2687 -3891 624 105 0 0 chrX 34166551 34166637 -142807503 + AluSq SINE Alu 2 87 -226 1063 78 0 0 chrX 34166637 34166785 -142807355 + AluSp/q SINE Alu 156 303 0 2158 90 10 33 chrX 34166799 34167098 -142807042 + AluSx SINE Alu 1 292 -20 1563 217 132 57 chrX 34167100 34167375 -142806765 + L1ME1 LINE L1 3841 4094 -2446 2044 133 0 7 chrX 34167375 34167676 -142806464 + AluSx SINE Alu 1 299 -13 1563 217 132 57 chrX 34167676 34167826 -142806314 + L1ME1 LINE L1 4094 4231 -2309 2238 116 0 7 chrX 34167826 34168136 -142806004 + AluSx SINE Alu 1 308 -4 1563 217 132 57 chrX 34168136 34168249 -142805891 + L1ME1 LINE L1 4231 4420 -2120 966 132 0 0 chrX 34168249 34168385 -142805755 + AluJo SINE Alu 1 136 -176 1631 160 76 6 chrX 34168405 34168749 -142805391 - L1 LINE L1 -818 5328 4961 974 134 0 15 chrX 34168749 34168883 -142805257 - FLAM_C SINE Alu -1 132 1 283 267 0 0 chrX 34168884 34168959 -142805181 + L1ME1 LINE L1 5554 5628 -912 * 776 222 47 75 chrX 34168946 34169225 -142804915 + L1ME1 LINE L1 6241 6511 -49 1856 164 0 13 chrX 34169225 34169523 -142804617 + AluJo SINE Alu 1 294 -18 454 113 127 0 chrX 34170135 34170206 -142803934 - MADE1 DNA Mariner 0 80 1 2140 112 28 0 chrX 34170326 34170611 -142803529 + AluSx SINE Alu 1 293 -19 1277 93 0 0 chrX 34171039 34171200 -142802940 - AluJo SINE Alu -23 289 129 978 104 0 8 chrX 34171257 34171391 -142802749 - AluJo SINE Alu -179 133 1 2217 88 0 37 chrX 34171647 34171973 -142802167 + AluSx SINE Alu 1 315 0 897 303 7 22 chrX 34171982 34172253 -142801887 + MER89-int LTR ERV1 2401 2667 -1980 1175 111 0 17 chrX 34172254 34172426 -142801714 - AluSq SINE Alu -10 303 135 375 200 70 24 chrX 34172457 34172557 -142801583 + MER89-int LTR ERV1 4990 5951 -1586 1485 128 0 18 chrX 34172915 34173142 -142800998 + AluJb SINE Alu 86 308 -4 1839 157 0 17 chrX 34173321 34173614 -142800526 + AluJo SINE Alu 1 288 -24 7094 19 0 0 chrX 34173776 34174545 -142799595 + L1PA2 LINE L1 5387 6155 0 1433 172 144 57 chrX 34174564 34174747 -142799393 + MER90 LTR ERV1 3 169 -445 1392 159 120 22 chrX 34174747 34175023 -142799117 + AluJo SINE Alu 1 303 -9 2251 95 3 0 chrX 34175028 34175313 -142798827 + AluY SINE Alu 1 286 -25 956 130 6 0 chrX 34175313 34175474 -142798666 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 1433 172 144 57 chrX 34175474 34175695 -142798445 + MER90 LTR ERV1 172 372 -242 1675 159 46 14 chrX 34175695 34175978 -142798162 - AluSx SINE Alu -20 292 1 1433 172 144 57 chrX 34175978 34176094 -142798046 + MER90 LTR ERV1 372 579 -35 372 267 21 73 chrX 34227216 34227407 -142746733 + MER46C DNA MER2_type 156 336 -2 1058 289 55 45 chrX 34228090 34228686 -142745454 - L2 LINE L2 0 3313 2707 910 236 14 47 chrX 34233577 34233874 -142740266 - L1ME3A LINE L1 -3 6167 5881 466 198 169 53 chrX 34233880 34234123 -142740017 - L1MC5 LINE L1 -36 7925 7655 269 307 11 11 chrX 34234300 34234388 -142739752 + MER91B DNA MER1_type 88 175 -15 27 62 0 0 chrX 34235143 34235191 -142738949 + AT_rich Low_complexity Low_complexity 1 48 0 2153 118 17 0 chrX 34236694 34236981 -142737159 - AluSx SINE Alu -20 292 1 273 136 34 17 chrX 34237160 34237219 -142736921 - MLT1J1 LTR MaLR -316 130 71 239 235 132 0 chrX 34237606 34237674 -142736466 - L2 LINE L2 -38 3234 3158 847 114 250 6 chrX 34237785 34237961 -142736179 + MER20 DNA MER1_type 1 219 0 323 195 39 13 chrX 34237973 34238050 -142736090 - Charlie1 DNA MER1_type -4 2757 2679 412 182 147 77 chrX 34238071 34238214 -142735926 - Charlie1 DNA MER1_type -2602 159 7 296 311 194 17 chrX 34238215 34238395 -142735745 + MIR SINE MIR 4 215 -47 266 292 0 0 chrX 34238916 34238988 -142735152 + (CGG)n Simple_repeat Simple_repeat 2 73 0 1101 178 73 170 chrX 34240047 34240489 -142733651 + L1MC4 LINE L1 7513 7632 -176 1374 120 76 7 chrX 34240489 34240764 -142733376 + L1MA8 LINE L1 5998 6291 0 1101 178 73 170 chrX 34240764 34240926 -142733214 + L1MC4 LINE L1 7632 7808 0 674 183 59 35 chrX 34241180 34241349 -142732791 - L1MD3 LINE L1 -459 7536 7364 462 241 61 85 chrX 34241353 34241565 -142732575 + L2 LINE L2 2733 2939 -375 598 290 34 17 chrX 34241584 34241760 -142732380 - MER110-int LTR ERV1 -2318 2329 2151 914 101 20 0 chrX 34241906 34242054 -142732086 + L1MB5 LINE L1 6024 6174 0 265 270 54 9 chrX 34242620 34242731 -142731409 + L1M4 LINE L1 4317 4432 -1714 348 163 216 32 chrX 34242746 34242866 -142731274 - HsTC2 DNA Tc2 -1761 137 1 820 135 0 0 chrX 34243387 34243498 -142730642 + AluSg/x SINE Alu 176 286 -24 447 19 0 0 chrX 34243655 34243707 -142730433 + (TG)n Simple_repeat Simple_repeat 2 53 0 181 302 19 0 chrX 34243774 34243827 -142730313 - MIR SINE MIR 0 262 209 298 131 49 0 chrX 34243918 34243979 -142730161 + L1MB2 LINE L1 6101 6164 -7 2243 99 13 7 chrX 34244064 34244367 -142729773 - AluSx SINE Alu -7 305 1 216 0 0 0 chrX 34244367 34244391 -142729749 + (T)n Simple_repeat Simple_repeat 1 24 0 185 178 14 41 chrX 34247004 34247077 -142727063 + CT-rich Low_complexity Low_complexity 4 74 0 731 121 52 0 chrX 34248745 34248861 -142725279 + AluSg/x SINE Alu 173 294 -18 2569 45 0 0 chrX 34248861 34249175 -142724965 + AluY SINE Alu 1 311 0 296 342 9 18 chrX 34249521 34249632 -142724508 + L2 LINE L2 2266 2375 -939 212 214 0 0 chrX 34249657 34249699 -142724441 - L2 LINE L2 -49 3223 3182 1356 101 0 0 chrX 34249977 34250146 -142723994 - AluSg/x SINE Alu -11 301 133 2151 130 3 3 chrX 34251424 34251723 -142722417 - AluSx SINE Alu -13 299 1 743 322 74 44 chrX 34251728 34252203 -142721937 + L2 LINE L2 2824 3312 -1 2325 113 0 0 chrX 34252618 34252920 -142721220 + AluSx SINE Alu 1 302 -10 332 313 94 0 chrX 34254410 34254538 -142719602 - MIR SINE MIR -34 228 89 842 185 0 0 chrX 34254745 34254880 -142719260 + FRAM SINE Alu 19 153 -23 277 178 322 0 chrX 34255356 34255446 -142718694 - MLT1K LTR MaLR -34 554 436 235 271 43 0 chrX 34255451 34255521 -142718619 - MIR SINE MIR -81 181 109 2438 85 0 0 chrX 34255543 34255836 -142718304 + AluSx SINE Alu 1 293 -19 418 258 90 70 chrX 34256042 34256150 -142717990 - L1M4 LINE L1 -6292 250 146 2489 63 3 0 chrX 34256150 34256453 -142717687 - AluY SINE Alu -7 304 1 418 258 90 70 chrX 34256453 34256473 -142717667 - L1M4 LINE L1 -6396 146 128 1814 117 137 48 chrX 34256473 34256866 -142717274 - MSTA LTR MaLR 0 428 1 418 258 90 70 chrX 34256866 34256980 -142717160 - L1M4 LINE L1 -6414 128 2 2177 106 0 46 chrX 34256982 34257148 -142716992 - AluY SINE Alu -22 289 142 2632 71 0 0 chrX 34257148 34257456 -142716684 - AluSg SINE Alu -2 308 1 2177 106 0 46 chrX 34257456 34257592 -142716548 - AluY SINE Alu -169 142 1 664 164 0 57 chrX 34257659 34257799 -142716341 - FLAM_C SINE Alu 0 143 12 5215 29 0 0 chrX 34257888 34258513 -142715627 - L1PA3 LINE L1 -5 6150 5526 1900 168 0 10 chrX 34258517 34258820 -142715320 - AluJo SINE Alu -12 300 1 926 189 61 9 chrX 34258820 34259048 -142715092 - L1MEc LINE L1 -4303 2093 1854 974 168 0 0 chrX 34259048 34259197 -142714943 - FRAM SINE Alu -2 174 26 2460 93 7 0 chrX 34259222 34259532 -142714608 + AluSx SINE Alu 1 312 0 1003 285 45 33 chrX 34259593 34259673 -142714467 - L1MEc LINE L1 -4759 1637 1559 2289 113 0 7 chrX 34259673 34259975 -142714165 - AluSx SINE Alu -12 300 1 1003 285 45 33 chrX 34259975 34260469 -142713671 - L1MEc LINE L1 -4837 1559 1056 2415 236 81 60 chrX 34260525 34261318 -142712822 - MER21B LTR ERV1 -54 809 1 928 159 41 9 chrX 34261330 34261550 -142712590 - L1MEc LINE L1 -5455 941 715 2738 94 7 2 chrX 34261573 34261976 -142712164 - L1M2 LINE L1 -572 5728 5324 2282 109 13 0 chrX 34261976 34262279 -142711861 - AluSx SINE Alu -5 307 1 460 93 0 0 chrX 34262376 34262451 -142711689 - L1M2 LINE L1 -1465 4681 4607 2413 101 0 0 chrX 34262460 34262767 -142711373 - AluSx SINE Alu -5 307 1 1908 167 0 13 chrX 34262771 34263070 -142711070 - AluJo SINE Alu -17 295 1 505 90 0 0 chrX 34263071 34263138 -142711002 + MER50 LTR ERV1 645 711 -23 527 219 130 0 chrX 34263139 34263285 -142710855 - L1MEc LINE L1 -6195 201 37 2306 105 0 13 chrX 34263654 34263960 -142710180 + AluSx SINE Alu 1 302 -10 2290 100 7 0 chrX 34263960 34264251 -142709889 + AluSg SINE Alu 1 293 -17 1996 162 0 0 chrX 34264958 34265347 -142708793 - AluJb SINE Alu 0 400 12 2358 103 0 0 chrX 34265385 34265687 -142708453 + AluSg SINE Alu 1 302 -8 1931 114 139 0 chrX 34265751 34266024 -142708116 + AluSq SINE Alu 1 311 -2 1764 155 24 7 chrX 34266315 34266611 -142707529 + AluJb SINE Alu 1 301 -11 2423 75 3 0 chrX 34266611 34266904 -142707236 - AluY SINE Alu -17 294 1 2412 79 7 10 chrX 34266922 34267227 -142706913 + AluSg SINE Alu 1 304 -6 2638 116 131 17 chrX 34267302 34267775 -142706365 - MER1A DNA MER1_type 0 527 1 2238 98 3 7 chrX 34268355 34268652 -142705488 + AluY SINE Alu 1 296 -15 1398 174 77 12 chrX 34268887 34269185 -142704955 - AluJb SINE Alu 0 320 6 2077 108 10 34 chrX 34269198 34269495 -142704645 - AluSq SINE Alu -18 295 6 2319 110 0 0 chrX 34269537 34269838 -142704302 - AluSq SINE Alu -9 304 4 1773 191 3 0 chrX 34270968 34271267 -142702873 - AluJo SINE Alu -12 300 1 2113 125 0 49 chrX 34271292 34271483 -142702657 - AluSx SINE Alu -1 311 141 2393 102 3 10 chrX 34271483 34271796 -142702344 - AluSx SINE Alu -1 311 1 2113 125 0 49 chrX 34271796 34271931 -142702209 - AluSx SINE Alu -171 141 1 1559 199 0 11 chrX 34272173 34272445 -142701695 + AluJo SINE Alu 1 269 -43 1379 92 31 0 chrX 34272892 34273088 -142701052 - MER30 DNA MER1_type -25 205 4 352 159 0 0 chrX 34274219 34274288 -142699852 - FLAM_A SINE Alu -19 114 58 585 229 0 0 chrX 34274288 34274428 -142699712 + AluJb SINE Alu 175 314 0 835 140 0 70 chrX 34274430 34274573 -142699567 - AluJo SINE Alu -161 151 19 2009 133 3 7 chrX 34274614 34274908 -142699232 + AluSq SINE Alu 21 313 0 309 251 95 75 chrX 34274915 34275013 -142699127 + L1MC4 LINE L1 7501 7595 -428 2465 95 0 0 chrX 34275013 34275319 -142698821 + AluSg SINE Alu 1 306 -4 309 251 95 75 chrX 34275319 34275415 -142698725 + L1MC4 LINE L1 7595 7754 -269 2199 141 0 3 chrX 34275462 34275775 -142698365 + AluSx SINE Alu 1 312 0 2232 131 3 13 chrX 34275789 34276103 -142698037 + AluSx SINE Alu 1 311 -1 1572 126 18 35 chrX 34276377 34276710 -142697430 + MER4A LTR ERV1 262 647 -17 295 281 240 7 chrX 34276760 34276906 -142697234 - MIR SINE MIR -8 254 75 279 0 0 0 chrX 34276939 34276970 -142697170 + (TA)n Simple_repeat Simple_repeat 2 32 0 1153 68 0 0 chrX 34276970 34277117 -142697023 - L1PA5 LINE L1 -9 6145 5999 2371 70 3 3 chrX 34277127 34277432 -142696708 - AluSp SINE Alu 0 305 1 297 0 0 0 chrX 34277432 34277465 -142696675 + (T)n Simple_repeat Simple_repeat 1 33 0 1203 127 5 14 chrX 34277551 34277763 -142696377 - MER6 DNA MER2_type 0 865 656 546 88 0 0 chrX 34277764 34277832 -142696308 + AluS SINE Alu 2 69 -244 1910 109 0 33 chrX 34277832 34278108 -142696032 - AluSx SINE Alu -38 274 8 2458 84 3 0 chrX 34279709 34280020 -142694120 + AluSp SINE Alu 1 312 -1 24 67 0 0 chrX 34280071 34280116 -142694024 + AT_rich Low_complexity Low_complexity 1 45 0 1892 126 0 0 chrX 34280150 34280404 -142693736 + AluSx SINE Alu 1 254 -58 259 299 180 9 chrX 34280543 34280754 -142693386 - L2 LINE L2 -257 3056 2810 2086 151 3 3 chrX 34280984 34281288 -142692852 - AluJo SINE Alu -8 304 1 257 0 0 29 chrX 34281311 34281345 -142692795 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 2360 69 0 0 chrX 34281347 34281622 -142692518 - AluY SINE Alu -36 275 1 2411 87 0 3 chrX 34281624 34281922 -142692218 - AluSx SINE Alu -15 297 1 482 266 32 0 chrX 34281946 34282070 -142692070 - MIR SINE MIR -101 161 34 2324 100 0 16 chrX 34282233 34282565 -142691575 - AluSg SINE Alu 0 310 2 2053 141 6 10 chrX 34282595 34282908 -142691232 - AluSx SINE Alu 0 312 1 258 325 48 48 chrX 34282908 34283074 -142691066 - L2 LINE L2 -565 2749 2584 1430 168 116 11 chrX 34283239 34283507 -142690633 + AluJb SINE Alu 1 296 -16 22 0 0 0 chrX 34283509 34283531 -142690609 + AT_rich Low_complexity Low_complexity 1 22 0 2154 122 7 0 chrX 34283540 34283834 -142690306 + AluSx SINE Alu 1 296 -16 248 330 52 0 chrX 34283907 34284022 -142690118 - L2 LINE L2 -916 2398 2278 229 163 349 12 chrX 34284113 34284199 -142689941 + MER103 DNA DNA 4 118 -48 714 175 0 17 chrX 34284240 34284360 -142689780 - FLAM_C SINE Alu -15 118 1 276 269 17 59 chrX 34284891 34285010 -142689130 - L1ME3A LINE L1 -69 6101 5988 2023 120 32 26 chrX 34285034 34285343 -142688797 - AluSx SINE Alu 0 312 2 2295 95 0 0 chrX 34285609 34285929 -142688211 + AluSx SINE Alu 1 320 0 441 290 68 17 chrX 34285972 34286148 -142687992 + REP3 LTR ERV 1 185 -377 1499 153 27 5 chrX 34286150 34286373 -142687767 - AluJb SINE Alu -19 293 66 2364 106 0 0 chrX 34286373 34286673 -142687467 + AluSx SINE Alu 1 301 -11 577 118 0 0 chrX 34286673 34286749 -142687391 - AluJb SINE Alu -235 77 2 228 206 0 96 chrX 34286751 34286824 -142687316 + REP3 LTR ERV 224 289 -273 2326 107 0 3 chrX 34286845 34287144 -142686996 - AluSx SINE Alu -14 298 1 1815 178 3 13 chrX 34287307 34287616 -142686524 + AluJb SINE Alu 1 306 -6 945 248 21 63 chrX 34287906 34288031 -142686109 + HERVL40 LTR ERVL 2050 2179 -3351 2119 138 0 7 chrX 34288031 34288329 -142685811 + AluSx SINE Alu 1 296 -16 945 248 21 63 chrX 34288329 34288489 -142685651 + HERVL40 LTR ERVL 2179 2323 -3207 402 294 175 6 chrX 34288511 34288688 -142685452 + HERVL40 LTR ERVL 3510 3716 -1814 4242 140 36 4 chrX 34288688 34289372 -142684768 + MER50 LTR ERV1 1 706 -28 2294 107 0 10 chrX 34289464 34289772 -142684368 + AluSx SINE Alu 3 307 -5 1966 156 14 0 chrX 34289807 34290102 -142684038 - AluJb SINE Alu -13 299 1 1478 134 14 0 chrX 34290606 34290829 -142683311 + AluJb SINE Alu 86 311 -1 4156 214 36 79 chrX 34290938 34291115 -142683025 + L1MDb LINE L1 640 823 -5583 1888 170 0 0 chrX 34291115 34291397 -142682743 + AluJo SINE Alu 1 282 -30 4156 214 36 79 chrX 34291397 34291602 -142682538 + L1MDb LINE L1 823 1035 -5371 2032 135 0 52 chrX 34291602 34291929 -142682211 + AluJb SINE Alu 1 310 -2 2321 112 0 13 chrX 34291939 34292253 -142681887 + AluSx SINE Alu 1 310 -2 4156 214 36 79 chrX 34292253 34292383 -142681757 + L1MDb LINE L1 1044 1178 -5228 1967 155 0 0 chrX 34292383 34292661 -142681479 + AluJb SINE Alu 2 279 -33 198 118 0 0 chrX 34292665 34292699 -142681441 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 4156 214 36 79 chrX 34292699 34292788 -142681352 + L1MDb LINE L1 1181 1272 -5134 2240 106 14 0 chrX 34292788 34293081 -142681059 + AluSg SINE Alu 4 300 -10 2052 95 4 0 chrX 34293084 34293346 -142680794 + AluSp SINE Alu 6 268 -45 4156 214 36 79 chrX 34293346 34293619 -142680521 + L1MDb LINE L1 1274 1557 -4849 2192 124 0 10 chrX 34293619 34293925 -142680215 - AluSx SINE Alu -9 303 1 4156 214 36 79 chrX 34293925 34294283 -142679857 + L1MDb LINE L1 1557 1929 -4477 1702 202 21 39 chrX 34294283 34294664 -142679476 - MLT1A2 LTR MaLR 0 374 1 4156 214 36 79 chrX 34294664 34295079 -142679061 + L1MDb LINE L1 1929 2226 -4180 1377 183 12 120 chrX 34295079 34295488 -142678652 - MLT1A1 LTR MaLR 0 365 1 4156 214 36 79 chrX 34295488 34295642 -142678498 + L1MDb LINE L1 2226 2385 -4021 442 103 0 0 chrX 34295627 34295695 -142678445 + L1M2 LINE L1 5419 5486 -805 * 643 218 0 0 chrX 34295695 34295805 -142678335 + FLAM_A SINE Alu 1 110 -32 2464 88 3 0 chrX 34295811 34296117 -142678023 - AluSg SINE Alu -1 309 3 4433 147 47 2 chrX 34296130 34296917 -142677223 + L1MA7 LINE L1 5470 6291 0 1795 123 105 0 chrX 34296973 34297249 -142676891 - AluSx SINE Alu -7 305 1 362 94 0 0 chrX 34297249 34297302 -142676838 + MER4C LTR ERV1 404 456 -9 2247 115 3 0 chrX 34297302 34297606 -142676534 + AluSx SINE Alu 1 305 -7 468 65 0 0 chrX 34297643 34297705 -142676435 + MER4C LTR ERV1 404 465 0 514 185 65 130 chrX 34297705 34297777 -142676363 - L1MDa LINE L1 -6194 346 271 757 180 0 8 chrX 34297777 34297905 -142676235 - FLAM_A SINE Alu -4 129 3 514 185 65 130 chrX 34297905 34298048 -142676092 - L1MDa LINE L1 -6269 271 145 884 94 0 0 chrX 34298049 34298166 -142675974 + AluSg/x SINE Alu 186 302 -10 2321 81 112 13 chrX 34298166 34298549 -142675591 - MER4C LTR ERV1 -44 421 1 2324 98 10 0 chrX 34298586 34298882 -142675258 + AluSx SINE Alu 1 299 -13 1295 166 89 46 chrX 34298965 34299194 -142674946 + LTR49 LTR ERV1 1 250 -345 2128 113 28 0 chrX 34299194 34299510 -142674630 + AluSx SINE Alu 1 324 0 1295 166 89 46 chrX 34299510 34299604 -142674536 + LTR49 LTR ERV1 250 339 -256 680 186 10 7 chrX 34299579 34299777 -142674363 + LTR29 LTR ERV1 387 622 0 * 343 158 13 13 chrX 34299956 34300032 -142674108 + CT-rich Low_complexity Low_complexity 4 79 0 1921 135 64 10 chrX 34300032 34300329 -142673811 - AluSq SINE Alu 0 313 1 2426 77 0 7 chrX 34300329 34300627 -142673513 - AluSc SINE Alu -12 297 1 1648 135 19 98 chrX 34300633 34300958 -142673182 - AluJo SINE Alu -11 301 3 2312 125 3 3 chrX 34301007 34301319 -142672821 + AluSx SINE Alu 1 312 0 2215 113 0 0 chrX 34301416 34301734 -142672406 - AluSq SINE Alu 0 318 1 246 212 12 118 chrX 34301760 34301803 -142672337 + MER58A DNA MER1_type 2 33 -308 1831 86 8 4 chrX 34301803 34302046 -142672094 - AluSq SINE Alu -2 311 68 246 212 12 118 chrX 34302046 34302087 -142672053 + MER58A DNA MER1_type 33 77 -147 548 223 68 59 chrX 34302089 34302231 -142671909 + L1MD2 LINE L1 4316 4462 -1684 2551 64 0 3 chrX 34302231 34302529 -142671611 + AluSx SINE Alu 1 297 -15 548 223 68 59 chrX 34302529 34302606 -142671534 + L1MD2 LINE L1 4462 4537 -1609 1938 150 3 14 chrX 34302625 34302918 -142671222 + AluJb SINE Alu 5 294 -18 457 266 65 47 chrX 34302918 34303087 -142671053 + MER41C LTR ERV1 43 214 -340 1924 159 0 25 chrX 34303193 34303513 -142670627 - AluJb SINE Alu 0 312 1 606 251 23 0 chrX 34303514 34303685 -142670455 + L1MD2 LINE L1 5055 5229 -917 * 2409 201 119 42 chrX 34303675 34304216 -142669924 + L1MD2 LINE L1 5571 6183 -176 207 0 0 0 chrX 34304216 34304239 -142669901 + (CA)n Simple_repeat Simple_repeat 2 24 0 2409 201 119 42 chrX 34304239 34304420 -142669720 + L1MD2 LINE L1 6183 6349 -10 1930 139 0 60 chrX 34304430 34304562 -142669578 + AluJb SINE Alu 9 147 -165 2565 77 0 0 chrX 34304562 34304873 -142669267 + AluY SINE Alu 1 311 0 1930 139 0 60 chrX 34304873 34305057 -142669083 + AluJb SINE Alu 147 306 -6 1770 184 57 28 chrX 34305522 34305875 -142668265 - MLT1A1 LTR MaLR 0 365 3 2340 119 0 0 chrX 34305937 34306247 -142667893 - AluSx SINE Alu -2 310 1 876 141 0 0 chrX 34306330 34306458 -142667682 + AluJ SINE Alu 1 128 -174 1704 139 28 3 chrX 34306458 34306737 -142667403 + L1PA13 LINE L1 5872 6160 -3 472 200 111 0 chrX 34306741 34306831 -142667309 + AluJ SINE Alu 121 220 -92 3877 102 60 6 chrX 34306831 34307381 -142666759 + LTR19B LTR ERV1 1 580 0 54080 91 18 9 chrX 34307381 34307694 -142666446 + HERVFH19I LTR ERV1 1 310 -7409 204 40 0 0 chrX 34307694 34307719 -142666421 + (TC)n Simple_repeat Simple_repeat 2 26 0 54080 91 18 9 chrX 34307719 34315056 -142659084 + HERVFH19I LTR ERV1 310 7716 -3 3841 111 54 13 chrX 34315059 34315616 -142658524 + LTR19B LTR ERV1 1 580 0 599 71 36 0 chrX 34315616 34315700 -142658440 + AluJ SINE Alu 216 302 -10 1972 112 0 68 chrX 34315702 34315835 -142658305 + AluSx SINE Alu 3 144 -168 2459 84 0 3 chrX 34315835 34316134 -142658006 + AluSq SINE Alu 1 298 -15 1972 112 0 68 chrX 34316134 34316321 -142657819 + AluSx SINE Alu 144 301 -11 1193 107 0 0 chrX 34316720 34316879 -142657261 - AluSg/x SINE Alu -15 297 139 2253 102 0 16 chrX 34316883 34316899 -142657241 - AluSq SINE Alu -14 299 284 378 0 0 0 chrX 34316899 34316941 -142657199 + (TG)n Simple_repeat Simple_repeat 2 43 0 2253 102 0 16 chrX 34316941 34317228 -142656912 - AluSq SINE Alu -29 284 1 746 211 240 66 chrX 34317289 34317730 -142656410 + REP3 LTR ERV 1 518 -44 209 333 9 27 chrX 34318148 34318259 -142655881 - MIR SINE MIR -71 191 83 1807 147 0 35 chrX 34318418 34318703 -142655437 + AluJb SINE Alu 21 295 -17 426 181 52 0 chrX 34318712 34318828 -142655312 + GA-rich Low_complexity Low_complexity 5 126 0 1012 129 14 0 chrX 34318921 34319099 -142655041 + AluSg/x SINE Alu 143 312 0 209 30 61 0 chrX 34319754 34319787 -142654353 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1110 115 11 71 chrX 34319907 34320053 -142654087 + FRAM SINE Alu 1 135 -177 1564 182 55 4 chrX 34320053 34320328 -142653812 - AluJo SINE Alu -23 289 1 1110 115 11 71 chrX 34320328 34320363 -142653777 + FRAM SINE Alu 135 171 -5 2236 110 3 0 chrX 34320477 34320767 -142653373 + AluSx SINE Alu 1 291 -21 2322 80 0 7 chrX 34320769 34321055 -142653085 + AluSc SINE Alu 1 284 -25 229 0 83 0 chrX 34321058 34321094 -142653046 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 346 213 43 0 chrX 34321096 34321190 -142652950 - MER113 DNA MER1_type? -412 109 12 25 65 0 0 chrX 34321241 34321287 -142652853 + AT_rich Low_complexity Low_complexity 1 46 0 1861 168 0 26 chrX 34321338 34321670 -142652470 - AluSx SINE Alu 0 312 1 481 250 0 0 chrX 34321727 34321831 -142652309 - U13 snRNA snRNA 0 104 1 2208 88 10 14 chrX 34322191 34322551 -142651589 - AluSp SINE Alu 0 313 1 1984 124 28 0 chrX 34322711 34322993 -142651147 + AluJb SINE Alu 1 290 -22 2128 114 0 27 chrX 34323008 34323305 -142650835 + AluSx SINE Alu 8 296 -16 451 129 54 32 chrX 34323370 34323463 -142650677 - AluSg/x SINE Alu -6 306 212 2300 99 0 7 chrX 34323549 34323853 -142650287 - AluSx SINE Alu -10 302 1 2319 112 0 0 chrX 34324371 34324676 -142649464 + AluSg SINE Alu 1 305 -5 792 139 47 16 chrX 34324687 34324816 -142649324 + AluJo/FLAM SINE Alu 1 133 -169 732 120 51 17 chrX 34324702 34324819 -142649321 + FLAM_C SINE Alu 16 136 -7 2195 91 21 0 chrX 34324819 34325104 -142649036 + AluSx SINE Alu 1 291 -21 192 77 0 0 chrX 34325105 34325131 -142649009 + (CGAGG)n Simple_repeat Simple_repeat 4 29 0 316 153 0 22 chrX 34325147 34325211 -142648929 + FLAM_A SINE Alu 18 63 -70 1472 214 76 24 chrX 34325220 34325603 -142648537 + L1MD1 LINE L1 5681 6083 -159 1035 194 52 9 chrX 34325613 34325845 -142648295 + L1MD2 LINE L1 6108 6349 -10 2309 93 3 0 chrX 34325855 34326166 -142647974 + AluSp SINE Alu 1 312 -1 891 192 66 20 chrX 34326172 34326497 -142647643 + L1MC4 LINE L1 6993 7486 -556 1112 113 0 0 chrX 34326726 34326876 -142647264 + AluSq/x SINE Alu 1 150 -163 1723 75 9 0 chrX 34326877 34327104 -142647036 + AluSp SINE Alu 73 301 -12 266 244 158 0 chrX 34328731 34328813 -142645327 + L2 LINE L2 3171 3265 -7 605 154 9 0 chrX 34328836 34328946 -142645194 + L1MC4 LINE L1 7471 7581 -461 1962 102 37 3 chrX 34328953 34329247 -142644893 - AluSx SINE Alu -6 306 3 1831 166 0 0 chrX 34329256 34329563 -142644577 - AluJo SINE Alu -5 307 1 574 273 220 11 chrX 34329565 34329668 -142644472 + L1MC4 LINE L1 7694 7774 -268 2091 115 0 3 chrX 34329668 34329972 -142644168 - AluSx SINE Alu -9 303 1 574 273 220 11 chrX 34329972 34330154 -142643986 + L1MC4 LINE L1 7774 8039 -3 1877 110 51 3 chrX 34330190 34330482 -142643658 - AluSg SINE Alu -4 306 1 2340 60 0 17 chrX 34330501 34330801 -142643339 + AluY SINE Alu 1 295 -16 229 300 0 0 chrX 34330807 34330867 -142643273 - L1MC5 LINE L1 -70 7891 7832 458 215 8 77 chrX 34330911 34331008 -142643132 - MIR SINE MIR -140 122 35 2426 55 0 16 chrX 34331008 34331316 -142642824 - AluY SINE Alu -8 303 1 458 215 8 77 chrX 34331316 34331348 -142642792 - MIR SINE MIR -227 35 2 2184 102 3 3 chrX 34331461 34331774 -142642366 - AluSq SINE Alu 0 313 1 671 254 75 32 chrX 34331777 34332056 -142642084 - L1MC4 LINE L1 -152 7890 7600 646 171 0 54 chrX 34332094 34332223 -142641917 + FLAM_C SINE Alu 19 140 -3 1066 200 0 14 chrX 34332232 34332442 -142641698 - AluJb SINE Alu -15 297 91 745 143 0 0 chrX 34332506 34332618 -142641522 + FLAM_C SINE Alu 4 115 -18 1082 129 134 0 chrX 34333759 34333842 -142640298 + MER30 DNA MER1_type 20 90 -140 188 35 35 0 chrX 34333842 34333871 -142640269 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1082 129 134 0 chrX 34333871 34333973 -142640167 + MER30 DNA MER1_type 90 230 0 2009 87 7 24 chrX 34334452 34334750 -142639390 - AluSc SINE Alu -16 293 1 1646 184 0 10 chrX 34334750 34335055 -142639085 - AluJo SINE Alu -10 302 1 1011 180 184 16 chrX 34335296 34335414 -142638726 + AluJb SINE Alu 1 98 -204 255 61 0 0 chrX 34335414 34335447 -142638693 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1011 180 184 16 chrX 34335447 34335573 -142638567 + AluJb SINE Alu 98 286 -16 306 139 23 151 chrX 34335595 34335681 -142638459 + Alu SINE Alu 245 302 0 1398 159 35 35 chrX 34335722 34336005 -142638135 - AluJb SINE Alu -12 300 18 776 108 62 31 chrX 34336014 34336143 -142637997 - FLAM_C SINE Alu 0 133 1 29 28 0 0 chrX 34336152 34336188 -142637952 + AT_rich Low_complexity Low_complexity 1 36 0 2341 262 24 11 chrX 34336193 34336596 -142637544 + L1MD2 LINE L1 4439 4856 -1290 1961 141 3 6 chrX 34336596 34336908 -142637232 - AluSx SINE Alu -1 311 1 2341 262 24 11 chrX 34336908 34337225 -142636915 + L1MD2 LINE L1 4856 5168 -978 712 187 22 14 chrX 34337225 34337364 -142636776 + FLAM_C SINE Alu 2 141 -2 498 206 42 0 chrX 34337407 34337576 -142636564 + L1MD2 LINE L1 5221 5395 -751 1019 178 0 43 chrX 34337581 34337789 -142636351 + AluJo SINE Alu 1 199 -113 1373 200 73 22 chrX 34337798 34338409 -142635731 + L1MD2 LINE L1 5681 6330 -29 1888 137 0 0 chrX 34338418 34338729 -142635411 - AluSx SINE Alu 0 311 1 1685 179 0 0 chrX 34338734 34339030 -142635110 - AluJo SINE Alu -16 296 1 805 214 39 28 chrX 34339032 34339214 -142634926 + L1MC4 LINE L1 7694 7877 -165 2056 101 0 32 chrX 34339215 34339523 -142634617 - AluSg SINE Alu -12 298 1 237 224 0 0 chrX 34339600 34339649 -142634491 + L1MC4 LINE L1 7991 8039 -3 2244 104 0 0 chrX 34339687 34339986 -142634154 - AluSq SINE Alu -14 299 1 1934 146 0 0 chrX 34339996 34340305 -142633835 - AluJb SINE Alu -2 310 2 1463 168 3 70 chrX 34340335 34340663 -142633477 + AluJo SINE Alu 1 306 -6 333 288 196 29 chrX 34340674 34340793 -142633347 + L1M4 LINE L1 2965 3063 -3083 2190 91 0 3 chrX 34340793 34341090 -142633050 + AluSx SINE Alu 5 300 -12 333 288 196 29 chrX 34341090 34341210 -142632930 + L1M4 LINE L1 3063 3244 -2902 420 104 134 0 chrX 34341253 34341320 -142632820 + AluS SINE Alu 2 77 -236 2074 105 0 20 chrX 34341384 34341689 -142632451 - AluSg SINE Alu -11 299 1 926 178 6 0 chrX 34341692 34341866 -142632274 - AluJb SINE Alu -8 304 130 1814 129 13 42 chrX 34341883 34342193 -142631947 + AluSx SINE Alu 1 301 -11 2211 93 0 16 chrX 34342193 34342503 -142631637 + AluSq SINE Alu 1 305 -8 811 137 0 23 chrX 34342520 34342651 -142631489 + AluSg/x SINE Alu 182 309 -3 202 137 0 78 chrX 34343134 34343185 -142630955 + (GGGTG)n Simple_repeat Simple_repeat 5 51 0 1915 91 0 30 chrX 34343436 34343559 -142630581 - AluSx SINE Alu -55 257 132 180 0 0 0 chrX 34343559 34343579 -142630561 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2147 82 0 4 chrX 34343582 34343862 -142630278 - AluSg SINE Alu -31 279 1 1915 91 0 30 chrX 34343862 34343999 -142630141 - AluSx SINE Alu -182 130 1 1311 184 90 4 chrX 34344000 34344266 -142629874 - AluJb SINE Alu -15 297 9 292 43 21 21 chrX 34344329 34344376 -142629764 + (TG)n Simple_repeat Simple_repeat 2 48 0 1544 127 8 8 chrX 34344732 34344977 -142629163 - AluJb SINE Alu -67 245 1 2173 170 33 2 chrX 34344977 34345407 -142628733 - L1MC/D LINE L1 -692 5927 5485 5010 224 45 99 chrX 34345561 34345734 -142628406 - L1MC/D LINE L1 -895 5511 5330 2347 67 0 3 chrX 34345734 34346034 -142628106 + AluSc SINE Alu 1 299 -10 5010 224 45 99 chrX 34346034 34346048 -142628092 - L1MC/D LINE L1 -1076 5330 5317 2201 96 0 0 chrX 34346048 34346340 -142627800 + AluSq SINE Alu 2 293 -20 5010 224 45 99 chrX 34346340 34346837 -142627303 - L1MC/D LINE L1 -1089 5317 4795 1661 159 14 10 chrX 34346837 34347127 -142627013 - AluJb SINE Alu -21 291 1 5010 224 45 99 chrX 34347127 34347376 -142626764 - L1MC/D LINE L1 -1611 4795 4534 1327 209 61 0 chrX 34347376 34347653 -142626487 - AluJo SINE Alu -18 294 1 5010 224 45 99 chrX 34347653 34347890 -142626250 - L1MC/D LINE L1 -1872 4534 4286 1914 129 11 3 chrX 34347890 34348176 -142625964 + AluJb SINE Alu 1 288 -24 5010 224 45 99 chrX 34348176 34348379 -142625761 - L1MC/D LINE L1 -2120 4286 4074 2284 99 0 0 chrX 34348379 34348681 -142625459 - AluSx SINE Alu -10 302 1 5010 224 45 99 chrX 34348681 34348973 -142625167 - L1MC/D LINE L1 -2332 4074 3768 2105 96 0 3 chrX 34348973 34349368 -142624772 - AluSx SINE Alu 0 394 1 5010 224 45 99 chrX 34349368 34349393 -142624747 - L1MC/D LINE L1 -2638 3768 3743 2193 108 0 0 chrX 34349393 34349689 -142624451 + AluSg SINE Alu 1 296 -14 5010 224 45 99 chrX 34349689 34350140 -142624000 - L1MC/D LINE L1 -2663 3743 3478 2194 89 0 0 chrX 34350142 34350423 -142623717 - AluSx SINE Alu -17 295 15 1820 131 11 3 chrX 34350453 34350736 -142623404 - AluJb SINE Alu -13 299 15 1083 222 15 18 chrX 34350747 34351076 -142623064 - L1MC/D LINE L1 -3525 2881 2554 1923 153 0 3 chrX 34351078 34351386 -142622754 - AluJo SINE Alu -5 307 1 969 191 25 50 chrX 34351391 34351674 -142622466 - L1MC/D LINE L1 -3961 2445 2170 2100 94 3 7 chrX 34351676 34351973 -142622167 - AluSq SINE Alu -17 296 1 1712 188 41 6 chrX 34352035 34352355 -142621785 + MER74A LTR ERVL 3 333 -225 2069 116 0 3 chrX 34352390 34352682 -142621458 - AluSg SINE Alu -19 291 1 2004 133 10 7 chrX 34352682 34352990 -142621150 - AluSx SINE Alu -3 309 1 1451 99 5 5 chrX 34353005 34353216 -142620924 - AluSq SINE Alu -14 299 89 213 64 0 64 chrX 34353218 34353265 -142620875 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 772 153 17 17 chrX 34353269 34353446 -142620694 + CT-rich Low_complexity Low_complexity 1 177 0 1685 151 13 32 chrX 34353446 34353757 -142620383 - AluJb SINE Alu -7 305 1 411 145 0 0 chrX 34353757 34353819 -142620321 + MER74A LTR ERVL 476 537 -21 1569 218 24 18 chrX 34353827 34354162 -142619978 - MLT1A1 LTR MaLR 0 365 29 1749 187 86 137 chrX 34354177 34354191 -142619949 - L1MC/D LINE L1 -4202 2204 2191 2233 113 0 0 chrX 34354191 34354502 -142619638 - AluSx SINE Alu -1 311 1 1749 187 86 137 chrX 34354502 34354777 -142619363 - L1MC/D LINE L1 -4215 2191 1903 1834 173 0 3 chrX 34354777 34355090 -142619050 - AluJo SINE Alu 0 312 1 1749 187 86 137 chrX 34355090 34355473 -142618667 - L1MC/D LINE L1 -4503 1903 1582 2166 113 3 0 chrX 34355473 34355784 -142618356 - AluSq SINE Alu 0 313 2 1749 187 86 137 chrX 34355784 34355971 -142618169 - L1MC/D LINE L1 -4824 1582 1387 1720 147 51 56 chrX 34355977 34356352 -142617788 + THE1C LTR MaLR 1 373 -2 1839 103 0 55 chrX 34356353 34356645 -142617495 + AluSx SINE Alu 1 276 -36 308 43 22 0 chrX 34356648 34356694 -142617446 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1295 111 5 0 chrX 34356694 34356883 -142617257 + AluSp SINE Alu 124 313 0 893 160 11 23 chrX 34356894 34357069 -142617071 - L1MC/D LINE L1 -5017 1392 1220 2129 121 0 0 chrX 34357070 34357367 -142616773 - AluSq SINE Alu -16 297 1 600 179 98 0 chrX 34357394 34357517 -142616623 - AluJb SINE Alu -176 136 2 898 107 25 61 chrX 34357521 34357718 -142616422 - L1MC/D LINE L1 -5189 1220 1031 686 93 0 0 chrX 34357741 34357827 -142616313 - U6 snRNA snRNA -21 86 1 552 193 0 0 chrX 34357827 34357936 -142616204 - L1MC/D LINE L1 -5366 1043 935 2255 83 63 109 chrX 34357950 34357977 -142616163 - L1MA8 LINE L1 -5 6286 6259 201 39 0 0 chrX 34357977 34358003 -142616137 + (TA)n Simple_repeat Simple_repeat 1 26 0 2255 83 63 109 chrX 34358003 34358149 -142615991 - L1MA8 LINE L1 -32 6259 6108 1957 133 0 0 chrX 34358149 34358443 -142615697 - AluJb SINE Alu -18 294 1 2255 83 63 109 chrX 34358443 34358475 -142615665 - L1MA8 LINE L1 -183 6108 6076 1616 148 35 11 chrX 34358475 34358759 -142615381 + AluJo SINE Alu 8 298 -14 2255 83 63 109 chrX 34358759 34359008 -142615132 - L1MA8 LINE L1 -215 6076 5851 401 86 0 111 chrX 34359014 34359075 -142615065 - L1MA8 LINE L1 -640 5660 5608 1779 152 0 13 chrX 34359075 34359377 -142614763 - AluJo SINE Alu -14 298 1 401 86 0 111 chrX 34359377 34359396 -142614744 - L1MA8 LINE L1 -692 5608 5589 * 1448 176 40 4 chrX 34359387 34359660 -142614480 - L1MC/D LINE L1 -5451 958 676 482 0 0 17 chrX 34359701 34359760 -142614380 + (TTTC)n Simple_repeat Simple_repeat 1 58 0 991 59 5 65 chrX 34359782 34359968 -142614172 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1668 159 4 0 chrX 34359968 34360245 -142613895 - AluJo SINE Alu -34 278 1 552 282 29 6 chrX 34360272 34360442 -142613698 - L1MC/D LINE L1 -5816 593 420 * 1989 260 12 76 chrX 34360438 34360952 -142613188 - L1MC/D LINE L1 -5790 619 155 2267 96 3 0 chrX 34360952 34361254 -142612886 - AluSp SINE Alu -10 303 1 1989 260 12 76 chrX 34361254 34361396 -142612744 - L1MC/D LINE L1 -6254 155 5 2231 86 13 0 chrX 34361467 34361640 -142612500 - AluY SINE Alu -6 305 125 216 0 0 0 chrX 34361640 34361664 -142612476 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2231 86 13 0 chrX 34361664 34361791 -142612349 - AluY SINE Alu -186 125 1 2033 135 0 0 chrX 34361791 34362088 -142612052 - AluSq SINE Alu -16 297 1 2322 47 0 10 chrX 34362092 34362389 -142611751 - AluY SINE Alu -17 294 1 910 150 0 0 chrX 34362401 34362534 -142611606 - FLAM_C SINE Alu 0 133 1 1277 130 73 120 chrX 34362720 34363036 -142611104 - AluJb SINE Alu 0 302 2 2191 99 0 0 chrX 34363039 34363332 -142610808 - AluSx SINE Alu -19 293 1 2532 48 0 6 chrX 34363364 34363676 -142610464 + AluY SINE Alu 1 310 -1 2502 122 40 40 chrX 34363682 34363720 -142610420 - MSTA LTR MaLR -3 425 388 2379 79 0 0 chrX 34363720 34364024 -142610116 + AluSc SINE Alu 1 304 -5 2238 67 3 19 chrX 34364024 34364339 -142609801 + AluY SINE Alu 1 311 0 2502 122 40 40 chrX 34364339 34364724 -142609416 - MSTA LTR MaLR -38 390 1 721 156 0 0 chrX 34364728 34364837 -142609303 - FLAM_C SINE Alu -32 111 3 487 199 94 64 chrX 34364842 34365013 -142609127 - MER21B LTR ERV1 -22 841 666 570 134 0 52 chrX 34365014 34365111 -142609029 + MER50 LTR ERV1 2 93 -641 404 164 15 0 chrX 34365121 34365188 -142608952 - MER21B LTR ERV1 -203 660 593 1954 138 10 0 chrX 34365188 34365493 -142608647 - AluSx SINE Alu -4 308 1 629 118 0 0 chrX 34365493 34365578 -142608562 - AluJ/FLAM SINE Alu -219 93 9 1820 144 57 3 chrX 34365583 34365881 -142608259 - MER21B LTR ERV1 -548 315 2 1760 145 32 3 chrX 34365914 34366196 -142607944 + AluJb SINE Alu 1 290 -22 822 199 7 0 chrX 34366272 34366452 -142607688 + FRAM SINE Alu 1 181 0 294 164 15 0 chrX 34366456 34366523 -142607617 + Charlie5 DNA MER1_type 55 122 -2490 1188 157 22 56 chrX 34366601 34366649 -142607491 + Charlie5 DNA MER1_type 2243 2291 -333 1619 193 0 3 chrX 34366649 34366960 -142607180 - AluJo SINE Alu -2 310 1 1188 157 22 56 chrX 34366960 34366971 -142607169 + Charlie5 DNA MER1_type 2291 2301 -323 1820 107 68 4 chrX 34366971 34367252 -142606888 - AluSp SINE Alu -12 301 3 1188 157 22 56 chrX 34367252 34367515 -142606625 + Charlie5 DNA MER1_type 2301 2555 -69 552 165 48 0 chrX 34367562 34367665 -142606475 - LTR65 LTR ERV1 -357 312 205 1903 68 109 0 chrX 34368456 34368722 -142605418 - AluSg SINE Alu -15 295 1 2249 190 24 60 chrX 34368943 34369045 -142605095 - LTR65 LTR ERV1 -20 649 545 487 232 27 9 chrX 34369045 34369157 -142604983 - MER81 DNA DNA 0 114 1 2249 190 24 60 chrX 34369157 34369340 -142604800 - LTR65 LTR ERV1 -124 545 357 2127 97 3 0 chrX 34369340 34369628 -142604512 + AluSx SINE Alu 1 289 -23 2249 190 24 60 chrX 34369628 34369641 -142604499 - LTR65 LTR ERV1 -312 357 345 1772 149 33 13 chrX 34369641 34369942 -142604198 + AluJb SINE Alu 1 307 -5 2249 190 24 60 chrX 34369942 34370140 -142604000 - LTR65 LTR ERV1 -324 345 169 588 174 0 10 chrX 34370142 34370240 -142603900 - MER96B DNA MER1_type? 0 417 321 1442 141 74 19 chrX 34370246 34370515 -142603625 - AluJb SINE Alu -28 284 1 1993 123 0 17 chrX 34370528 34370829 -142603311 - AluSx SINE Alu -16 296 1 201 74 0 0 chrX 34370830 34370857 -142603283 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 1487 190 7 3 chrX 34370857 34371152 -142602988 - AluJb SINE Alu -16 296 1 1862 138 3 26 chrX 34371174 34371478 -142602662 - AluJo SINE Alu -15 297 1 2295 69 23 0 chrX 34371528 34371833 -142602307 + AluSp SINE Alu 1 312 -1 376 232 17 99 chrX 34372771 34372952 -142601188 - L1M4 LINE L1 -2885 3261 3096 213 39 0 0 chrX 34373055 34373081 -142601059 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1764 125 7 4 chrX 34373081 34373360 -142600780 - AluSx SINE Alu -32 280 1 1375 125 62 92 chrX 34373433 34373738 -142600402 + AluJb SINE Alu 1 296 -16 580 230 58 100 chrX 34373738 34373842 -142600298 - L1M4 LINE L1 -1715 4431 4324 2105 105 9 25 chrX 34373842 34374157 -142599983 + AluSg SINE Alu 1 310 0 580 230 58 100 chrX 34374157 34374354 -142599786 - L1M4 LINE L1 -1822 4324 4141 1504 112 48 32 chrX 34374381 34374631 -142599509 - AluSx SINE Alu 0 312 59 427 130 0 0 chrX 34574631 34574700 -142399440 + Alu SINE Alu 234 302 -10 300 116 0 0 chrX 34574706 34574749 -142399391 + L1MB1 LINE L1 6124 6166 -2 1927 136 16 52 chrX 34574752 34574837 -142399303 + L1MB8 LINE L1 5811 5898 -280 1854 110 46 4 chrX 34574837 34575118 -142399022 + AluSx SINE Alu 1 293 -19 1927 136 16 52 chrX 34575118 34575414 -142398726 + L1MB8 LINE L1 5898 6178 0 231 269 0 0 chrX 34575455 34575507 -142398633 + L2 LINE L2 3262 3313 0 376 333 65 27 chrX 34575520 34575706 -142398434 + L1ME LINE L1 4031 4223 -1923 366 288 101 19 chrX 34575921 34575988 -142398152 + L1ME LINE L1 4596 4656 -1490 2179 108 0 10 chrX 34575988 34576294 -142397846 + AluSg SINE Alu 1 303 -7 366 288 101 19 chrX 34576294 34576650 -142397490 + L1ME LINE L1 4656 5054 -1092 516 264 97 23 chrX 34576830 34577129 -142397011 + L1ME LINE L1 5283 5603 -559 419 224 155 6 chrX 34577168 34577329 -142396811 + L1M4 LINE L1 2790 2974 -3172 1465 145 21 55 chrX 34577335 34577624 -142396516 + AluJo SINE Alu 15 293 -19 1286 133 9 5 chrX 34577625 34577835 -142396305 + AluJo SINE Alu 86 296 -16 412 283 44 52 chrX 34577846 34578083 -142396057 + L1M4 LINE L1 2954 3214 -2932 232 293 121 32 chrX 34580063 34580220 -142393920 - L1M4 LINE L1 -3313 2833 2663 188 67 33 0 chrX 34580325 34580355 -142393785 + (GA)n Simple_repeat Simple_repeat 2 32 0 249 253 52 55 chrX 34580555 34580747 -142393393 - L1P5 LINE L1 -726 5430 5243 249 93 0 47 chrX 34580930 34580973 -142393167 + Alu SINE Alu 107 147 -154 1200 126 6 0 chrX 34580986 34581169 -142392971 + AluSg/x SINE Alu 121 304 -8 1561 209 96 96 chrX 34581430 34582037 -142392103 - MER92B LTR ERV1 -29 607 1 1991 121 7 3 chrX 34582302 34582600 -142391540 + AluSx SINE Alu 1 299 -13 2172 98 17 0 chrX 34582616 34582911 -142391229 + AluSx SINE Alu 2 301 -11 581 304 98 63 chrX 34582911 34583199 -142390941 - L1M4 LINE L1 -1534 4612 4302 1469 174 43 4 chrX 34583199 34583475 -142390665 - AluJb SINE Alu -6 306 20 581 304 98 63 chrX 34583475 34583627 -142390513 - L1M4 LINE L1 -1844 4302 4157 937 143 87 41 chrX 34583637 34583673 -142390467 - MER3 DNA MER1_type -4 205 172 1911 150 10 0 chrX 34583673 34583980 -142390160 - AluJb SINE Alu -2 310 1 937 143 87 41 chrX 34583980 34584139 -142390001 - MER3 DNA MER1_type -37 172 1 269 293 10 10 chrX 34584194 34584293 -142389847 - L1P5 LINE L1 -2017 4129 4031 1688 149 53 0 chrX 34584339 34584621 -142389519 - AluJb SINE Alu -11 301 5 2166 117 0 0 chrX 34584631 34584938 -142389202 - AluSx SINE Alu -5 307 1 2321 78 3 0 chrX 34584967 34585261 -142388879 + AluSp SINE Alu 1 295 -18 369 93 0 0 chrX 34585584 34585638 -142388502 + (CA)n Simple_repeat Simple_repeat 1 54 0 685 236 119 118 chrX 34585924 34586411 -142387729 + MLT1G1 LTR MaLR 1 491 -104 1430 183 26 33 chrX 34586411 34586717 -142387423 + AluJo SINE Alu 3 306 -6 685 236 119 118 chrX 34586717 34586823 -142387317 + MLT1G1 LTR MaLR 491 595 0 1396 199 54 7 chrX 34587098 34587394 -142386746 - AluJb SINE Alu -2 310 1 2019 211 65 27 chrX 34587425 34587842 -142386298 - MER77 LTR ERV1 -6 599 100 2388 116 0 23 chrX 34587842 34588187 -142385953 - MER1B DNA MER1_type 0 337 1 2019 211 65 27 chrX 34588187 34588289 -142385851 - MER77 LTR ERV1 -505 100 3 1757 156 7 13 chrX 34588389 34588697 -142385443 - AluJb SINE Alu -6 306 1 2342 87 3 0 chrX 34588796 34589107 -142385033 - AluSx SINE Alu 0 312 1 4209 159 52 14 chrX 34589160 34589845 -142384295 - MER21B LTR ERV1 -113 750 36 2564 116 83 5 chrX 34589845 34590242 -142383898 - MSTA LTR MaLR 0 428 1 4209 159 52 14 chrX 34590242 34590265 -142383875 - MER21B LTR ERV1 -827 36 15 1238 87 46 26 chrX 34590293 34590438 -142383702 - L1MA8 LINE L1 -40 6251 6100 2423 112 21 24 chrX 34590438 34590814 -142383326 - THE1C LTR MaLR 0 375 1 1238 87 46 26 chrX 34590814 34590863 -142383277 - L1MA8 LINE L1 -191 6100 6053 857 221 84 33 chrX 34590872 34591296 -142382844 - MLT1D LTR MaLR -8 497 5 5228 185 33 99 chrX 34591300 34592205 -142381935 - MLT1D-int LTR MaLR -1 1370 597 2037 125 23 0 chrX 34592205 34592510 -142381630 - AluSx SINE Alu 0 312 1 5228 185 33 99 chrX 34592510 34593068 -142381072 - MLT1D-int LTR MaLR -774 597 4 1795 191 153 18 chrX 34593069 34593508 -142380632 - MLT1D LTR MaLR -7 498 1 421 309 79 76 chrX 34593840 34594243 -142379897 + HAL1b LINE L1 -4 255 -1076 497 196 0 0 chrX 34594249 34594341 -142379799 + L1MEc LINE L1 38 129 -6267 1758 141 6 55 chrX 34594341 34594668 -142379472 + AluSx SINE Alu 1 311 -1 1677 135 2 148 chrX 34594675 34594914 -142379226 - LTR8 LTR ERV1 -349 342 183 2051 118 7 7 chrX 34594914 34595211 -142378929 + AluSx SINE Alu 1 297 -15 1677 135 2 148 chrX 34595211 34595371 -142378769 - LTR8 LTR ERV1 -508 183 1 1841 194 19 13 chrX 34595401 34595777 -142378363 + MER68 LTR ERV1 2 423 -182 10561 151 21 20 chrX 34595777 34596077 -142378063 + HERVL68 LTR ERVL 34 332 -2705 2014 121 0 0 chrX 34596077 34596402 -142377738 + AluSx SINE Alu 1 325 0 10561 151 21 20 chrX 34596402 34596743 -142377397 + HERVL68 LTR ERVL 332 671 -2366 2557 140 74 0 chrX 34596743 34597164 -142376976 + LTR47A LTR ERVL 1 452 0 10561 151 21 20 chrX 34597164 34598299 -142375841 + HERVL68 LTR ERVL 671 1814 -1223 2001 113 33 0 chrX 34598299 34598641 -142375499 - AluJb SINE Alu 0 352 1 6854 143 8 7 chrX 34598641 34599733 -142374407 + HERVL68 LTR ERVL 1794 2886 -151 1141 96 25 61 chrX 34599734 34599746 -142374394 - AluJo SINE Alu -14 298 287 369 0 0 0 chrX 34599746 34599787 -142374353 + (TG)n Simple_repeat Simple_repeat 2 42 0 1141 96 25 61 chrX 34599787 34599972 -142374168 - AluJo SINE Alu -25 287 108 2409 91 43 14 chrX 34599974 34600366 -142373774 - MLT2A1 LTR ERVL 0 453 1 703 140 0 0 chrX 34600367 34600474 -142373666 - AluJo SINE Alu -201 111 5 849 130 36 0 chrX 34600478 34600616 -142373524 + HERVL68 LTR ERVL 2884 3026 -11 2269 226 25 27 chrX 34600618 34601176 -142372964 + MER68 LTR ERV1 4 560 -2 2373 81 0 3 chrX 34601270 34601580 -142372560 + AluSx SINE Alu 1 309 -3 2490 202 82 70 chrX 34601588 34601695 -142372445 + L1MC5 LINE L1 6508 6612 -1349 315 0 0 0 chrX 34601695 34601730 -142372410 + (CA)n Simple_repeat Simple_repeat 1 35 0 2490 202 82 70 chrX 34601730 34602528 -142371612 + L1MC5 LINE L1 6612 7429 -532 251 221 76 55 chrX 34602702 34602847 -142371293 + L1ME3A LINE L1 6021 6168 -2 2183 103 3 0 chrX 34602910 34603211 -142370929 + AluSq SINE Alu 1 302 -11 2292 92 9 0 chrX 34603659 34603976 -142370164 - L1MB2 LINE L1 -3 6168 5849 2155 107 10 0 chrX 34603990 34604298 -142369842 - AluSx SINE Alu -1 311 1 765 180 16 0 chrX 34604302 34604430 -142369710 - FLAM_C SINE Alu -3 130 1 264 280 54 21 chrX 34604830 34604923 -142369217 - L1ME LINE L1 -5912 158 63 238 302 0 0 chrX 34604920 34604983 -142369157 - L1M4 LINE L1 -5604 938 876 * 363 301 32 32 chrX 34605558 34605777 -142368363 - L1M4 LINE L1 -6307 235 17 705 100 82 0 chrX 34605834 34605944 -142368196 - FLAM_C SINE Alu -14 119 1 2339 82 0 13 chrX 34610340 34610655 -142363485 - AluSx SINE Alu -1 311 1 800 178 59 30 chrX 34610670 34610839 -142363301 + MER20B DNA MER1_type 1 174 -45 762 153 79 23 chrX 34611284 34611461 -142362679 + L1MCa LINE L1 50 236 -6190 1973 81 0 0 chrX 34611621 34611880 -142362260 - AluSx SINE Alu -5 307 49 2466 128 25 48 chrX 34611892 34612095 -142362045 - L1MB2 LINE L1 -262 5909 5703 1487 192 0 0 chrX 34612095 34612355 -142361785 + AluJo SINE Alu 1 260 -52 2466 128 25 48 chrX 34612355 34612589 -142361551 - L1MB2 LINE L1 -468 5703 5482 187 54 54 0 chrX 34612864 34612901 -142361239 + A-rich Low_complexity Low_complexity 2 40 0 1921 148 0 3 chrX 34612910 34613214 -142360926 + AluJb SINE Alu 1 303 -9 747 240 72 67 chrX 34613215 34613561 -142360579 + L1MA9 LINE L1 5935 6282 -30 2156 128 0 0 chrX 34613579 34613891 -142360249 + AluSx SINE Alu 1 312 0 1194 162 0 15 chrX 34614999 34615203 -142358937 + AluJb SINE Alu 86 286 -26 360 0 0 0 chrX 34615275 34615315 -142358825 + (TA)n Simple_repeat Simple_repeat 2 41 0 2257 96 0 0 chrX 34615315 34615618 -142358522 - AluSx SINE Alu -9 303 1 930 120 0 0 chrX 34615660 34615793 -142358347 - FLAM_C SINE Alu 0 133 1 1126 113 5 0 chrX 34615835 34616029 -142358111 - Charlie5 DNA MER1_type 0 2624 2430 1472 124 8 64 chrX 34616068 34616283 -142357857 + L1M3 LINE L1 5454 5653 -518 1605 156 6 75 chrX 34616283 34616492 -142357648 + AluJb SINE Alu 2 181 -131 2207 91 7 0 chrX 34616492 34616790 -142357350 - AluSx SINE Alu -12 300 1 1605 156 6 75 chrX 34616790 34616914 -142357226 + AluJb SINE Alu 181 312 0 1472 124 8 64 chrX 34616914 34616965 -142357175 + L1M3 LINE L1 5653 5705 -466 1705 181 0 7 chrX 34616969 34617262 -142356878 - AluJb SINE Alu -21 291 1 1403 121 8 54 chrX 34617593 34617675 -142356465 + L1M3 LINE L1 5486 5570 -601 1978 135 0 3 chrX 34617675 34617971 -142356169 + AluSx SINE Alu 6 300 -12 1403 121 8 54 chrX 34617971 34618128 -142356012 + L1M3 LINE L1 5570 5714 -457 720 226 0 0 chrX 34618133 34618257 -142355883 - FRAM SINE Alu -52 124 1 239 186 0 68 chrX 34618262 34618321 -142355819 - L1MA9 LINE L1 -370 5942 5888 * 611 131 83 12 chrX 34618313 34618434 -142355706 + L1MCa LINE L1 1627 2192 -4235 239 237 111 56 chrX 34619286 34619484 -142354656 - L1ME LINE L1 -227 5894 5686 243 185 19 19 chrX 34619529 34619583 -142354557 + GA-rich Low_complexity Low_complexity 3 56 0 2135 100 7 3 chrX 34620945 34621254 -142352886 - AluSx SINE Alu -2 310 1 1142 189 48 2 chrX 34621289 34621576 -142352564 + MER2 DNA MER2_type 1 341 -4 2281 94 3 0 chrX 34621802 34622111 -142352029 + AluSx SINE Alu 1 310 -2 427 114 38 0 chrX 34622524 34622603 -142351537 + CT-rich Low_complexity Low_complexity 2 83 0 1327 163 61 49 chrX 34622614 34622799 -142351341 - AluJo SINE Alu -45 267 77 1775 140 7 40 chrX 34622799 34623099 -142351041 - AluJo SINE Alu -22 290 1 1327 163 61 49 chrX 34623099 34623177 -142350963 - AluJo SINE Alu -235 77 1 224 330 0 11 chrX 34623587 34623678 -142350462 - L2 LINE L2 -665 2649 2560 231 330 11 23 chrX 34623697 34623785 -142350355 + MIR SINE MIR 168 254 -8 1847 147 41 7 chrX 34624642 34624811 -142349329 - AluJb SINE Alu -10 302 117 197 33 33 0 chrX 34624811 34624841 -142349299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1847 147 41 7 chrX 34624841 34624963 -142349177 - AluJb SINE Alu -195 117 1 1660 157 10 51 chrX 34624997 34625291 -142348849 + AluJo SINE Alu 1 282 -30 227 324 190 47 chrX 34625357 34625668 -142348472 - L2 LINE L2 -341 2973 2708 2642 130 21 58 chrX 34625668 34625965 -142348175 - MLT1C LTR MaLR 0 467 193 2232 114 13 0 chrX 34625965 34626273 -142347867 + AluSx SINE Alu 1 312 0 2642 130 21 58 chrX 34626273 34626460 -142347680 - MLT1C LTR MaLR -274 193 1 227 324 190 47 chrX 34626460 34626531 -142347609 - L2 LINE L2 -606 2708 2648 2352 97 3 0 chrX 34626531 34626829 -142347311 + AluSx SINE Alu 1 299 -13 227 324 190 47 chrX 34626829 34627125 -142347015 - L2 LINE L2 -666 2648 2197 2053 128 0 3 chrX 34627131 34627435 -142346705 + AluJb SINE Alu 3 305 0 2453 98 0 0 chrX 34627560 34627866 -142346274 + AluSq SINE Alu 1 306 -7 2144 122 3 10 chrX 34627866 34628160 -142345980 + AluSg SINE Alu 1 292 -18 437 280 0 9 chrX 34628180 34628287 -142345853 + L2 LINE L2 3187 3292 -21 1978 148 7 3 chrX 34628302 34628592 -142345548 - AluJb SINE Alu -21 291 1 236 173 0 39 chrX 34628827 34628879 -142345261 + Alu SINE Alu 87 136 -166 1507 147 12 114 chrX 34628879 34629212 -142344928 + AluJo SINE Alu 2 300 -2 1727 217 24 49 chrX 34629339 34629718 -142344422 + L1ME1 LINE L1 5682 6048 -118 2584 80 3 0 chrX 34629718 34630029 -142344111 - AluSq SINE Alu -1 312 1 1727 217 24 49 chrX 34630029 34630143 -142343997 + L1ME1 LINE L1 6048 6163 -3 554 320 23 23 chrX 34630315 34630618 -142343522 + L1MD1 LINE L1 4068 4370 -1776 1978 146 10 3 chrX 34630618 34630913 -142343227 + AluJo SINE Alu 1 297 -15 764 146 15 0 chrX 34630913 34631043 -142343097 + L1MC1 LINE L1 5966 6097 -236 698 133 0 0 chrX 34631049 34631162 -142342978 + L1MD1 LINE L1 4748 4860 -1286 1250 174 9 26 chrX 34631165 34631395 -142342745 - AluJo SINE Alu 0 312 87 1281 167 0 0 chrX 34631399 34631597 -142342543 - AluJb SINE Alu -33 279 82 4586 172 67 60 chrX 34631597 34632140 -142342000 + L1MD1 LINE L1 4847 5385 -857 2245 122 0 22 chrX 34632140 34632459 -142341681 + AluSx SINE Alu 1 312 0 4586 172 67 60 chrX 34632459 34632884 -142341256 + L1MD1 LINE L1 5385 5805 -437 2220 121 0 13 chrX 34632884 34633190 -142340950 + AluJb SINE Alu 1 302 -10 4586 172 67 60 chrX 34633190 34633595 -142340545 + L1MD1 LINE L1 5805 6242 0 446 280 238 14 chrX 34633701 34633915 -142340225 + MIR SINE MIR 1 262 0 371 168 17 0 chrX 34634148 34634293 -142339847 + L1MC4a LINE L1 6939 7222 -586 398 71 107 0 chrX 34634297 34634381 -142339759 - Charlie5 DNA MER1_type -118 2494 2402 1059 99 0 0 chrX 34634382 34634513 -142339627 + AluSq/x SINE Alu 1 131 -182 2142 82 0 0 chrX 34634521 34634778 -142339362 + AluSc SINE Alu 1 257 -52 2006 142 127 21 chrX 34634849 34635236 -142338904 + MSTA LTR MaLR 1 428 0 909 166 14 0 chrX 34635238 34635383 -142338757 - AluSg/x SINE Alu -32 278 132 28 0 0 0 chrX 34635600 34635628 -142338512 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 34635668 34635690 -142338450 + AT_rich Low_complexity Low_complexity 1 22 0 1961 133 0 24 chrX 34635690 34635983 -142338157 - AluSx SINE Alu -26 286 1 317 285 97 48 chrX 34636093 34636279 -142337861 - L1ME4a LINE L1 -176 5945 5751 21 0 0 0 chrX 34636452 34636473 -142337667 + AT_rich Low_complexity Low_complexity 1 21 0 1556 124 3 133 chrX 34636475 34636844 -142337296 + AluJo SINE Alu 1 302 0 919 150 13 13 chrX 34636947 34637100 -142337040 - AluSg/x SINE Alu -16 294 142 363 117 2 2 chrX 34637100 34637164 -142336976 - Alu SINE Alu -244 55 1 2032 107 76 0 chrX 34637934 34638223 -142335917 + AluSq SINE Alu 1 311 -2 2295 99 0 0 chrX 34639070 34639382 -142334758 + AluSx SINE Alu 2 313 0 2184 100 4 0 chrX 34639382 34639689 -142334451 + AluSg SINE Alu 1 308 0 436 160 75 0 chrX 34639693 34639787 -142334353 - L1MC4 LINE L1 -3 8039 7939 1760 160 17 3 chrX 34639795 34640082 -142334058 - AluJo SINE Alu -21 291 1 779 144 25 6 chrX 34640157 34640317 -142333823 + L1MC2 LINE L1 5814 5976 -368 945 142 8 0 chrX 34640317 34640451 -142333689 + AluJo SINE Alu 1 135 -177 235 258 75 0 chrX 34640486 34640579 -142333561 + Zaphod DNA AcHobo 3931 4030 -1 2180 80 0 73 chrX 34640596 34640910 -142333230 + AluSg SINE Alu 1 291 -19 466 312 51 45 chrX 34640931 34641141 -142332999 + L1MC/D LINE L1 4695 4909 -1237 1982 165 0 0 chrX 34641141 34641438 -142332702 + AluJo SINE Alu 1 297 -15 466 312 51 45 chrX 34641438 34641560 -142332580 + L1MC/D LINE L1 4909 5029 -1117 1961 181 0 0 chrX 34641560 34641870 -142332270 + AluJb SINE Alu 1 310 -2 248 313 0 0 chrX 34641969 34642065 -142332075 + L1MC/D LINE L1 5348 5443 -799 2344 89 0 0 chrX 34642075 34642366 -142331774 + AluSc SINE Alu 1 291 -18 2440 83 7 0 chrX 34642748 34643049 -142331091 - AluSx SINE Alu -9 303 1 1236 289 54 5 chrX 34643168 34643576 -142330564 + LTR16A LTR ERVL 16 443 -7 2262 84 0 0 chrX 34643576 34643850 -142330290 + AluSx SINE Alu 29 302 -10 1886 150 0 20 chrX 34643972 34644265 -142329875 + AluJo SINE Alu 1 287 -25 21 36 0 0 chrX 34644289 34644317 -142329823 + AT_rich Low_complexity Low_complexity 1 28 0 2426 99 0 0 chrX 34644562 34644865 -142329275 + AluSx SINE Alu 1 303 -9 2504 74 3 0 chrX 34645313 34645609 -142328531 + AluSq SINE Alu 1 297 -16 1849 143 4 0 chrX 34645849 34646145 -142327995 - AluJo SINE Alu 0 307 11 1307 221 86 35 chrX 34646180 34646551 -142327589 - MLT1B LTR MaLR 0 390 1 2502 84 0 0 chrX 34646759 34647067 -142327073 + AluSg SINE Alu 2 309 -1 1950 88 113 7 chrX 34647327 34647601 -142326539 + AluSg1 SINE Alu 1 303 -6 1882 161 0 19 chrX 34647615 34647925 -142326215 + AluJo SINE Alu 1 304 -8 1123 241 0 37 chrX 34648015 34648285 -142325855 + L1MEc LINE L1 37 296 -6100 395 248 64 0 chrX 34648256 34648381 -142325759 + L1MD2 LINE L1 6238 6370 -58 * 852 134 55 0 chrX 34648415 34648542 -142325598 - AluJb SINE Alu -32 280 147 756 221 94 76 chrX 34648544 34648716 -142325424 + L1MEc LINE L1 2354 2521 -3694 2533 90 0 0 chrX 34648716 34649027 -142325113 + AluSx SINE Alu 1 311 -1 756 221 94 76 chrX 34649027 34649184 -142324956 + L1MEc LINE L1 2521 2689 -3526 1129 188 19 0 chrX 34649185 34649393 -142324747 - MLT1B LTR MaLR 0 390 179 1566 181 30 33 chrX 34649403 34649707 -142324433 - AluJo SINE Alu -5 307 5 1100 139 36 0 chrX 34649723 34649889 -142324251 - AluSp SINE Alu -5 308 137 877 139 61 12 chrX 34649891 34650056 -142324084 - MLT1B LTR MaLR -217 173 1 209 383 28 0 chrX 34650303 34650410 -142323730 - MIR SINE MIR -3 259 150 208 247 62 62 chrX 34650465 34650546 -142323594 - MIR SINE MIR -124 138 58 24 53 0 0 chrX 34650799 34650837 -142323303 + AT_rich Low_complexity Low_complexity 1 38 0 2140 61 8 8 chrX 34651364 34651625 -142322515 - AluY SINE Alu -15 296 36 2161 97 13 7 chrX 34651708 34652018 -142322122 + AluSx SINE Alu 1 312 0 927 147 98 0 chrX 34653134 34653297 -142320843 + AluJb SINE Alu 118 296 -16 1270 213 134 50 chrX 34653862 34653925 -142320215 - L1ME2 LINE L1 -3 6163 6107 2092 149 3 3 chrX 34653925 34654234 -142319906 + AluJb SINE Alu 1 309 -3 1270 213 134 50 chrX 34654234 34654631 -142319509 - L1ME2 LINE L1 -59 6107 5664 370 208 32 8 chrX 34654652 34654804 -142319336 - MER63A DNA MER1_type -26 184 1 1178 159 5 19 chrX 34654804 34655018 -142319122 - L1ME2 LINE L1 -496 5670 5460 665 149 158 0 chrX 34655021 34655135 -142319005 + FLAM_C SINE Alu 2 133 0 2464 100 0 0 chrX 34655184 34655515 -142318625 + AluSx SINE Alu 1 331 0 3156 138 86 27 chrX 34655734 34655811 -142318329 - MER67C LTR ERV1 0 710 639 2156 104 6 47 chrX 34655811 34656129 -142318011 - AluSx SINE Alu -6 306 2 3156 138 86 27 chrX 34656129 34656717 -142317423 - MER67C LTR ERV1 -71 639 6 190 280 40 0 chrX 34657912 34657962 -142316178 - L2 LINE L2 -3250 64 13 2195 89 0 4 chrX 34658407 34658687 -142315453 + AluSq SINE Alu 35 313 0 273 267 75 17 chrX 34658862 34658982 -142315158 - L2 LINE L2 -531 2783 2657 4513 142 38 0 chrX 34659618 34660321 -142313819 - MER44D DNA MER2_type -3 602 1 468 254 71 0 chrX 34660734 34660860 -142313280 + MIR SINE MIR 68 202 -60 204 209 0 23 chrX 34661602 34661645 -142312495 - L2 LINE L2 0 3313 3272 814 221 0 6 chrX 34661661 34661824 -142312316 + MIR SINE MIR 84 245 -17 446 231 23 0 chrX 34661835 34661965 -142312175 + MER20B DNA MER1_type 503 635 -148 309 216 24 32 chrX 34661966 34662091 -142312049 + (TTATA)n Simple_repeat Simple_repeat 5 128 0 308 172 141 0 chrX 34662124 34662223 -142311917 + MER20B DNA MER1_type 634 746 -37 27 0 0 0 chrX 34662352 34662379 -142311761 + AT_rich Low_complexity Low_complexity 1 27 0 851 246 182 14 chrX 34662388 34662685 -142311455 + L2 LINE L2 2967 3313 0 483 275 74 0 chrX 34664271 34664420 -142309720 - MIR SINE MIR -95 167 8 288 0 0 0 chrX 34667282 34667314 -142306826 + (TG)n Simple_repeat Simple_repeat 2 33 0 324 0 0 0 chrX 34667384 34667420 -142306720 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 259 0 17 chrX 34669174 34669232 -142304908 + GA-rich Low_complexity Low_complexity 2 58 0 1686 184 72 6 chrX 34671632 34671952 -142302188 + MER58B DNA MER1_type 1 341 0 451 193 0 0 chrX 34673021 34673109 -142301031 + L1MB8 LINE L1 6091 6178 0 556 78 39 0 chrX 34673436 34673513 -142300627 - MADE1 DNA Mariner 0 80 1 280 264 79 50 chrX 34675484 34675624 -142298516 + MIR SINE MIR 9 152 -110 583 302 0 34 chrX 34676075 34676254 -142297886 + MIR SINE MIR 90 262 0 187 163 0 47 chrX 34676314 34676357 -142297783 + MIR SINE MIR 182 222 -40 984 103 0 22 chrX 34676358 34676494 -142297646 - FLAM_C SINE Alu 0 133 1 2221 91 0 0 chrX 34676520 34676816 -142297324 + AluSq SINE Alu 1 296 -17 2048 93 17 7 chrX 34676825 34677116 -142297024 + AluSx SINE Alu 1 294 -18 1060 106 0 0 chrX 34677116 34677258 -142296882 - L1PB4 LINE L1 -14 6142 6001 182 293 0 0 chrX 34677258 34677299 -142296841 + MIR SINE MIR 213 253 -9 208 284 108 0 chrX 34677367 34677441 -142296699 + MIR SINE MIR 169 250 -12 691 263 110 10 chrX 34677746 34677955 -142296185 + MIR SINE MIR 30 259 -3 491 267 9 0 chrX 34677967 34678083 -142296057 + MIR SINE MIR 18 134 -128 225 171 0 0 chrX 34678195 34678230 -142295910 + MIR SINE MIR 219 253 -9 206 233 0 55 chrX 34678380 34678453 -142295687 + G-rich Low_complexity Low_complexity 2 70 0 698 281 101 0 chrX 34679800 34680017 -142294123 + L2 LINE L2 2848 3086 -227 2412 80 3 242 chrX 34680035 34680672 -142293468 - MER31A LTR ERV1 0 485 1 803 237 34 19 chrX 34680676 34680883 -142293257 + L2 LINE L2 3103 3312 -1 207 225 28 56 chrX 34680868 34680939 -142293201 + MIR SINE MIR 178 246 -16 * 207 0 0 0 chrX 34681027 34681050 -142293090 + (ATG)n Simple_repeat Simple_repeat 2 24 0 1791 128 21 3 chrX 34685201 34685483 -142288657 + AluSg SINE Alu 11 297 -13 2213 69 20 30 chrX 34685483 34685788 -142288352 + AluY SINE Alu 1 302 -9 902 306 22 0 chrX 34685788 34686020 -142288120 + MIR SINE MIR 24 260 -2 1763 146 29 0 chrX 34687057 34687356 -142286784 - AluJb SINE Alu 0 307 1 2274 84 0 0 chrX 34687610 34687906 -142286234 + AluSx SINE Alu 1 296 -16 350 359 13 38 chrX 34688059 34688218 -142285922 - L1M4 LINE L1 -1235 4911 4757 1406 196 29 21 chrX 34688229 34688548 -142285592 + AluJo SINE Alu 1 321 0 568 276 49 32 chrX 34688596 34689040 -142285100 - L1 LINE L1 -1419 4727 4284 1893 131 35 0 chrX 34689042 34689213 -142284927 - AluJo SINE Alu -8 304 117 188 33 0 33 chrX 34689213 34689243 -142284897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1893 131 35 0 chrX 34689243 34689361 -142284779 - AluJo SINE Alu -195 117 5 451 300 92 24 chrX 34689365 34689444 -142284696 - L1 LINE L1 -2370 3776 3704 2095 118 3 0 chrX 34689444 34689740 -142284400 - AluSx SINE Alu -15 297 1 451 300 92 24 chrX 34689740 34690040 -142284100 - L1 LINE L1 -2442 3704 3371 304 167 77 0 chrX 34690034 34690112 -142284028 + L1MC4a LINE L1 6095 6178 -1630 * 1805 151 0 17 chrX 34690122 34690421 -142283719 + AluJb SINE Alu 3 296 -16 2085 121 6 10 chrX 34690421 34690734 -142283406 + AluSx SINE Alu 1 312 0 2683 171 35 119 chrX 34690734 34690887 -142283253 + MER21B LTR ERV1 213 377 -486 2312 87 3 0 chrX 34690887 34691198 -142282942 - AluSp SINE Alu -1 312 1 2683 171 35 119 chrX 34691198 34691733 -142282407 + MER21B LTR ERV1 377 789 -74 592 223 223 15 chrX 34691779 34691981 -142282159 + L1MC4 LINE L1 6636 6879 -1163 6815 214 50 33 chrX 34691981 34693223 -142280917 + L1M4 LINE L1 1 1219 -5425 2253 98 0 3 chrX 34693223 34693528 -142280612 + AluSq SINE Alu 1 304 -9 6815 214 50 33 chrX 34693528 34694586 -142279554 + L1M4 LINE L1 1219 2257 -4387 1659 167 13 20 chrX 34694586 34694717 -142279423 + AluJb SINE Alu 1 131 -181 2013 110 0 3 chrX 34694717 34695041 -142279099 + AluSg SINE Alu 1 323 0 1659 167 13 20 chrX 34695041 34695207 -142278933 + AluJb SINE Alu 131 297 -15 6815 214 50 33 chrX 34695207 34695426 -142278714 + L1M4 LINE L1 2257 2471 -4173 3441 117 0 36 chrX 34695426 34695958 -142278182 - MER75 DNA T2_type 0 514 2 6815 214 50 33 chrX 34695958 34696374 -142277766 + L1M4 LINE L1 2471 2878 -3766 1480 162 40 37 chrX 34696374 34696670 -142277470 - AluJb SINE Alu -15 297 1 6815 214 50 33 chrX 34696670 34697646 -142276494 + L1M4 LINE L1 2878 4048 -2596 912 144 0 0 chrX 34697646 34697778 -142276362 + FLAM_C SINE Alu 1 132 -1 6815 214 50 33 chrX 34697778 34698232 -142275908 + L1M4 LINE L1 4048 4492 -2152 1073 245 0 16 chrX 34698239 34698484 -142275656 - MIR SINE MIR -21 241 1 2071 78 57 0 chrX 34698549 34698830 -142275310 + AluSc SINE Alu 1 297 -12 24 77 0 0 chrX 34699147 34699199 -142274941 + AT_rich Low_complexity Low_complexity 1 52 0 31 18 0 53 chrX 34699353 34699382 -142274758 + AT_rich Low_complexity Low_complexity 1 27 -27 1584 146 0 0 chrX 34699382 34699622 -142274518 - AluJo SINE Alu -26 286 47 31 18 0 53 chrX 34699622 34699649 -142274491 + AT_rich Low_complexity Low_complexity 27 54 0 26 82 0 0 chrX 34700017 34700078 -142274062 + AT_rich Low_complexity Low_complexity 1 61 0 500 73 0 0 chrX 34700078 34700146 -142273994 - AluSp/q SINE Alu -12 301 234 2307 91 0 3 chrX 34750294 34750580 -142223560 - AluSp SINE Alu -28 285 1 2077 113 0 0 chrX 34750656 34750922 -142223218 - AluSg SINE Alu -44 266 1 827 277 61 29 chrX 34752075 34752265 -142221875 + L2 LINE L2 2926 3108 -205 2125 120 30 0 chrX 34752265 34752564 -142221576 - AluSq SINE Alu -5 308 1 827 277 61 29 chrX 34752564 34752748 -142221392 + L2 LINE L2 3108 3312 -1 209 320 0 0 chrX 34752758 34752808 -142221332 + L2 LINE L2 3221 3270 -2 1877 163 0 17 chrX 34752813 34753102 -142221038 + AluJb SINE Alu 1 284 -28 198 0 0 0 chrX 34753102 34753124 -142221016 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 149 6 68 chrX 34753967 34754121 -142220019 + AluJo SINE Alu 1 126 -186 2120 122 7 10 chrX 34754121 34754424 -142219716 + AluSq SINE Alu 1 302 -11 1697 149 6 68 chrX 34754424 34754591 -142219549 + AluJo SINE Alu 126 302 -10 823 35 35 0 chrX 34754592 34754705 -142219435 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 327 25 0 0 chrX 34755254 34755294 -142218846 + (CA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chrX 34755377 34755411 -142218729 + (CA)n Simple_repeat Simple_repeat 2 35 0 1098 286 58 3 chrX 34755613 34755959 -142218181 + LTR16A LTR ERVL 86 450 0 412 289 10 0 chrX 34755994 34756098 -142218042 + HERV16 LTR ERVL 42 146 -4850 691 219 43 12 chrX 34756101 34756265 -142217875 + HERVL LTR ERVL 3087 3255 -2399 2298 301 89 23 chrX 34756438 34757350 -142216790 + HERVL LTR ERVL 346 1317 -3679 * 7032 324 61 32 chrX 34757348 34759222 -142214918 + HERVL LTR ERVL 2070 4079 -1685 2538 75 7 0 chrX 34759222 34759528 -142214612 + AluSx SINE Alu 1 308 -4 7032 324 61 32 chrX 34759528 34760869 -142213271 + HERVL LTR ERVL 4079 5379 -385 1382 239 38 21 chrX 34761054 34761426 -142212714 + LTR16A LTR ERVL 59 436 -14 427 192 39 0 chrX 34761627 34761731 -142212409 + MER112 DNA MER1_type 65 172 -88 2297 86 45 0 chrX 34761996 34762286 -142211854 + AluSg SINE Alu 1 303 -7 224 371 11 6 chrX 34766940 34767118 -142207022 + (CA)n Simple_repeat Simple_repeat 2 180 0 370 286 102 0 chrX 34767519 34767666 -142206474 - MIR SINE MIR -12 250 89 207 217 22 0 chrX 34767893 34767939 -142206201 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 384 270 117 0 chrX 34767959 34768096 -142206044 + MIR SINE MIR 19 171 -91 533 208 87 13 chrX 34769409 34769558 -142204582 + MIR SINE MIR 101 260 -2 193 227 23 0 chrX 34769866 34769910 -142204230 + L2 LINE L2 3228 3272 0 181 205 103 0 chrX 34770866 34770905 -142203235 - L2 LINE L2 -4 3309 3267 1237 117 0 17 chrX 34770914 34771093 -142203047 - FRAM SINE Alu 0 176 1 956 189 24 61 chrX 34771094 34771306 -142202834 + MIR SINE MIR 59 262 0 436 239 203 20 chrX 34774111 34774362 -142199778 + L2 LINE L2 2565 2861 -453 1309 145 18 27 chrX 34775545 34775766 -142198374 + MER20 DNA MER1_type 1 219 0 190 267 53 67 chrX 34776403 34776478 -142197662 + L2 LINE L2 3220 3293 -20 463 234 0 88 chrX 34776529 34776666 -142197474 + MIR SINE MIR 69 193 -69 406 232 18 101 chrX 34776958 34777069 -142197071 + MIR SINE MIR 89 183 -79 2282 107 0 0 chrX 34777069 34777367 -142196773 - AluSx SINE Alu -14 298 1 406 232 18 101 chrX 34777367 34777423 -142196717 + MIR SINE MIR 183 242 -20 238 156 89 0 chrX 34777392 34777437 -142196703 + L2 LINE L2 3216 3264 -8 * 386 255 102 10 chrX 34777435 34777533 -142196607 - L2 LINE L2 -4 3309 3203 1772 161 13 17 chrX 34777627 34777926 -142196214 - AluJo SINE Alu -9 303 6 201 94 0 0 chrX 34777931 34777963 -142196177 + (T)n Simple_repeat Simple_repeat 1 32 0 2517 93 0 0 chrX 34778336 34778647 -142195493 + AluSx SINE Alu 1 311 -1 536 244 58 17 chrX 34778860 34779032 -142195108 + L2 LINE L2 3135 3313 0 * 581 283 39 71 chrX 34778999 34779310 -142194830 - L2 LINE L2 -983 2331 2031 1670 183 20 23 chrX 34779431 34779737 -142194403 - AluJb SINE Alu -5 307 3 1355 201 90 4 chrX 34779741 34780019 -142194121 - AluJo SINE Alu -10 302 1 906 203 5 21 chrX 34784823 34785015 -142189125 + MER5A DNA MER1_type 1 189 0 288 266 32 0 chrX 34788021 34788115 -142186025 + MLT1E2-int LTR MaLR 1275 1371 0 2574 187 77 35 chrX 34788115 34788713 -142185427 + MLT1E2 LTR MaLR 1 623 -3 187 376 111 0 chrX 34788784 34788901 -142185239 + L2 LINE L2 2921 3050 -263 2257 106 0 38 chrX 34788957 34789277 -142184863 - AluSx SINE Alu -4 308 1 269 216 0 0 chrX 34789304 34789355 -142184785 - MIR SINE MIR -3 259 209 759 213 0 44 chrX 34789362 34789461 -142184679 + MIR SINE MIR 2 93 -169 907 152 0 0 chrX 34789461 34789593 -142184547 - FLAM_C SINE Alu 0 133 2 759 213 0 44 chrX 34789593 34789653 -142184487 + MIR SINE MIR 93 154 -108 265 220 51 0 chrX 34789655 34789714 -142184426 + MIR SINE MIR 128 189 -73 1271 223 91 7 chrX 34789763 34790072 -142184068 + MER46C DNA MER2_type 4 338 0 515 306 65 11 chrX 34790096 34790282 -142183858 - MIR SINE MIR -63 199 4 1046 286 150 10 chrX 34790714 34791588 -142182552 - L2 LINE L2 -2 3311 2313 768 206 38 12 chrX 34791675 34791835 -142182305 - MIR SINE MIR -66 196 33 501 275 83 10 chrX 34791863 34792056 -142182084 - L2 LINE L2 -184 3129 2923 182 323 108 0 chrX 34792053 34792146 -142181994 + L2 LINE L2 2875 2977 -336 * 456 169 28 164 chrX 34792284 34792461 -142181679 + MIR SINE MIR 60 212 -50 609 93 0 41 chrX 34792689 34792786 -142181354 - FLAM_A SINE Alu -8 134 42 1227 244 92 55 chrX 34793176 34793532 -142180608 + L2 LINE L2 2804 3184 -129 2243 110 3 3 chrX 34793532 34793833 -142180307 - AluSx SINE Alu -11 301 1 1227 244 92 55 chrX 34793833 34793963 -142180177 + L2 LINE L2 3184 3308 -5 685 274 105 20 chrX 34794044 34794292 -142179848 - L2 LINE L2 0 3313 3045 874 131 0 29 chrX 34794501 34794638 -142179502 - FLAM_A SINE Alu 0 133 1 635 268 78 10 chrX 34794893 34795098 -142179042 - L2 LINE L2 -272 3041 2823 362 214 69 76 chrX 34795100 34795231 -142178909 - MIR SINE MIR -54 208 79 227 287 104 43 chrX 34795275 34795390 -142178750 - L2 LINE L2 -341 2972 2851 513 277 189 6 chrX 34795416 34795575 -142178565 + MIR SINE MIR 75 262 0 190 75 75 0 chrX 34796473 34796513 -142177627 + G-rich Low_complexity Low_complexity 6 48 0 192 179 0 0 chrX 34796890 34796929 -142177211 + (CGG)n Simple_repeat Simple_repeat 2 40 0 1553 245 41 13 chrX 34798658 34799228 -142174912 - L2 LINE L2 -1 3312 2722 246 259 118 12 chrX 34799230 34799315 -142174825 + MLT1K LTR MaLR 495 588 0 270 348 137 2 chrX 34799318 34799565 -142174575 - L2 LINE L2 -257 3056 2765 1100 211 87 0 chrX 34799671 34799936 -142174204 + L2 LINE L2 2213 2500 -814 878 172 59 11 chrX 34800000 34800186 -142173954 + L2 LINE L2 3119 3313 0 232 242 167 40 chrX 34800191 34800389 -142173751 + L1MC4a LINE L1 6714 6936 -872 2431 74 0 3 chrX 34800580 34800877 -142173263 - AluSg SINE Alu -14 296 1 2264 103 3 0 chrX 34801370 34801661 -142172479 + AluSq SINE Alu 1 292 -21 414 289 188 10 chrX 34801988 34802196 -142171944 + L2 LINE L2 2855 3099 -214 1549 99 45 9 chrX 34802215 34802437 -142171703 - MER30 DNA MER1_type 0 230 1 1106 296 72 22 chrX 34802541 34802556 -142171584 - L2 LINE L2 -9 3304 3291 1068 179 12 0 chrX 34802556 34802724 -142171416 + FAM SINE Alu 1 170 -5 1106 296 72 22 chrX 34802724 34803167 -142170973 - L2 LINE L2 -22 3291 2823 554 192 83 17 chrX 34803245 34803365 -142170775 + L2 LINE L2 3184 3311 -2 407 234 75 154 chrX 34803695 34803896 -142170244 + L2 LINE L2 3128 3312 -1 861 219 67 22 chrX 34804366 34804590 -142169550 + MIR SINE MIR 29 262 0 501 312 30 34 chrX 34804741 34804978 -142169162 - MIR SINE MIR -11 251 16 1896 168 13 10 chrX 34806478 34806843 -142167297 - AluJb SINE Alu 0 366 1 251 168 124 124 chrX 34807149 34807222 -142166918 - L1MC4 LINE L1 -2 8040 7965 1778 154 30 23 chrX 34807222 34807527 -142166613 - AluJb SINE Alu -5 307 1 251 168 124 124 chrX 34807527 34807566 -142166574 - L1MC4 LINE L1 -76 7966 7928 488 256 31 26 chrX 34807582 34807777 -142166363 - L1ME LINE L1 -298 6634 6439 1997 147 0 10 chrX 34807783 34808076 -142166064 - AluSx SINE Alu -22 290 1 1545 185 61 27 chrX 34808172 34808502 -142165638 + MER58B DNA MER1_type 1 341 0 1254 214 34 44 chrX 34808808 34809236 -142164904 - L1ME LINE L1 -743 6214 5809 1918 161 36 34 chrX 34809238 34809360 -142164780 - L1MB7 LINE L1 0 6184 6064 2002 142 3 19 chrX 34809360 34809670 -142164470 - AluJb SINE Alu -6 306 2 1918 161 36 34 chrX 34809670 34809964 -142164176 - L1MB7 LINE L1 -120 6064 5767 3849 175 49 31 chrX 34809967 34810518 -142163622 - L1ME LINE L1 -4246 2711 2172 2162 118 20 3 chrX 34810518 34810815 -142163325 + AluSx SINE Alu 1 302 -10 3849 175 49 31 chrX 34810815 34811204 -142162936 - L1ME LINE L1 -4785 2172 1750 2127 163 94 85 chrX 34811204 34811715 -142162425 + LTR64 LTR ERVK 1 519 -39 1904 150 17 13 chrX 34811715 34812015 -142162125 + AluJb SINE Alu 1 301 -11 2127 163 94 85 chrX 34812015 34812056 -142162084 + LTR64 LTR ERVK 519 558 0 3849 175 49 31 chrX 34812056 34812086 -142162054 - L1ME LINE L1 -5207 1750 1722 622 167 33 17 chrX 34812090 34812210 -142161930 - MSTC LTR MaLR -306 122 1 233 232 14 29 chrX 34812272 34812341 -142161799 - L1ME LINE L1 -5685 1174 1107 2199 124 0 3 chrX 34812443 34812749 -142161391 - AluSx SINE Alu -7 305 1 291 104 0 0 chrX 34812760 34812808 -142161332 + (TTTTG)n Simple_repeat Simple_repeat 1 48 0 705 78 0 0 chrX 34812817 34812907 -142161233 - AluSg/x SINE Alu -44 268 179 288 243 65 65 chrX 34813023 34813130 -142161010 - L1ME LINE L1 -6594 265 159 4585 84 17 3 chrX 34813186 34813829 -142160311 - L1MA3 LINE L1 -1 6304 5653 1163 181 0 0 chrX 34813840 34814022 -142160118 - AluJb SINE Alu -6 306 125 367 21 113 0 chrX 34814022 34814119 -142160021 + (TA)n Simple_repeat Simple_repeat 2 109 0 322 236 91 27 chrX 34814120 34814230 -142159910 - L1MC4 LINE L1 -1339 6703 6587 2238 111 24 0 chrX 34814235 34814615 -142159525 - L1 LINE L1 -1515 6050 5662 894 206 0 5 chrX 34814800 34814989 -142159151 + L1MB7 LINE L1 5920 6107 -77 1043 92 0 21 chrX 34815006 34815147 -142158993 + AluJb SINE Alu 1 138 -174 293 115 98 0 chrX 34815149 34815210 -142158930 + AluS SINE Alu 231 297 -3 7990 13 2 0 chrX 34815583 34816769 -142157371 - L1PA3 LINE L1 0 6155 4970 2414 128 3 5 chrX 34816769 34817143 -142156997 - L1 LINE L1 -1892 5673 5299 1517 95 5 3 chrX 34817145 34817505 -142156635 - L1 LINE L1 -4265 3300 2803 * 13188 124 12 0 chrX 34817502 34819445 -142154695 - L1 LINE L1 -5119 2446 480 4730 81 0 2 chrX 34819451 34819482 -142154658 - L1PA8A LINE L1 0 6131 5528 4735 63 0 0 chrX 34819482 34820056 -142154084 - L1PA8A LINE L1 -30 6101 5528 4050 76 9 0 chrX 34820053 34820745 -142153395 + L1PA8A LINE L1 4826 5524 -607 * 3017 162 19 2 chrX 34820739 34821208 -142152932 - L1 LINE L1 -7073 492 16 * 427 254 41 6 chrX 34821194 34821363 -142152777 - L1M4 LINE L1 -6355 187 13 * 2277 95 0 0 chrX 34821462 34821776 -142152364 - AluSx SINE Alu 0 314 1 250 155 0 42 chrX 34821776 34821847 -142152293 - L1M LINE L1 -850 5330 5263 262 297 47 0 chrX 34821874 34821938 -142152202 - MIR SINE MIR -194 68 2 2366 102 13 58 chrX 34822275 34822287 -142151853 + THE1C LTR MaLR 1 12 -363 4391 99 27 2 chrX 34822287 34822851 -142151289 + LTR19B LTR ERV1 1 578 -2 2366 102 13 58 chrX 34822851 34823231 -142150909 + THE1C LTR MaLR 12 375 0 1060 180 0 0 chrX 34823521 34823699 -142150441 - AluJb SINE Alu -6 306 129 1649 185 10 27 chrX 34823795 34824087 -142150053 - AluJo SINE Alu -25 287 1 224 246 0 29 chrX 34824795 34824864 -142149276 + CT-rich Low_complexity Low_complexity 3 69 0 811 226 96 5 chrX 34824922 34825130 -142149010 - MIR SINE MIR -30 232 6 * 3220 275 73 43 chrX 34825128 34825897 -142148243 - L2 LINE L2 -19 3294 2550 1849 160 0 0 chrX 34825897 34826179 -142147961 + AluJb SINE Alu 1 282 -30 3220 275 73 43 chrX 34826179 34826860 -142147280 - L2 LINE L2 -763 2550 1782 234 267 57 9 chrX 34826865 34826957 -142147183 - L1 LINE L1 -3783 2363 2264 2015 140 3 3 chrX 34826957 34827265 -142146875 - AluSx SINE Alu -4 308 1 234 267 57 9 chrX 34827265 34827277 -142146863 - L1 LINE L1 -3882 2264 2254 402 36 0 0 chrX 34827285 34827341 -142146799 - L1MB4 LINE L1 0 6180 6125 407 264 71 20 chrX 34827522 34827999 -142146141 + L1MEc LINE L1 2074 2573 -3642 374 317 44 38 chrX 34828149 34828332 -142145808 + MIR SINE MIR 20 203 -59 951 41 41 29 chrX 34828728 34828783 -142145357 + (TTTC)n Simple_repeat Simple_repeat 1 229 0 951 41 41 29 chrX 34828783 34828955 -142145185 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 303 158 0 18 chrX 34829164 34829221 -142144919 - FLAM SINE Alu 0 133 78 5175 152 26 8 chrX 34829336 34830214 -142143926 + MER54A LTR ERVL 8 901 0 1105 219 33 103 chrX 34830530 34830986 -142143154 + L1ME2 LINE L1 5709 6132 -32 2800 65 59 19 chrX 34831019 34831224 -142142916 + L1PA10 LINE L1 5781 6009 -159 270 0 0 0 chrX 34831224 34831254 -142142886 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 2800 65 59 19 chrX 34831254 34831420 -142142720 + L1PA10 LINE L1 6009 6167 -1 636 216 0 0 chrX 34831427 34831538 -142142602 + MER5A DNA MER1_type 75 185 -4 197 299 91 0 chrX 34831789 34831866 -142142274 + L2 LINE L2 3229 3312 -1 1081 211 102 87 chrX 34832182 34832418 -142141722 - L1ME2 LINE L1 -9 6155 5924 380 71 18 0 chrX 34832418 34832474 -142141666 + (CA)n Simple_repeat Simple_repeat 2 58 0 1081 211 102 87 chrX 34832474 34832521 -142141619 - L1ME2 LINE L1 -240 5924 5879 1899 131 7 18 chrX 34832521 34832804 -142141336 - AluJo SINE Alu -32 280 1 1081 211 102 87 chrX 34832804 34832978 -142141162 - L1ME2 LINE L1 -285 5879 5690 180 267 0 100 chrX 34833659 34833749 -142140391 + MIR SINE MIR 115 195 -67 506 134 25 8 chrX 34834140 34834230 -142139910 - L1MD3 LINE L1 -156 7839 7542 2980 179 63 28 chrX 34834235 34834703 -142139437 - L1MC4a LINE L1 -288 7520 7021 2068 140 3 16 chrX 34834703 34835017 -142139123 + AluJb SINE Alu 1 310 -2 2980 179 63 28 chrX 34835017 34835201 -142138939 - L1MC4a LINE L1 -787 7021 6845 5209 188 28 20 chrX 34835205 34836270 -142137870 - L1MC3 LINE L1 -7 7778 6705 840 239 82 87 chrX 34836297 34836866 -142137274 - LTR41 LTR ERVL -1 772 120 1884 227 75 16 chrX 34836873 34837682 -142136458 - L1MC4a LINE L1 -1512 6296 5390 918 116 4 43 chrX 34837681 34837836 -142136304 - L1ME4a LINE L1 -288 5833 5679 * 2130 181 26 46 chrX 34837847 34838042 -142136098 + L1MA9 LINE L1 5795 5992 -320 2274 124 24 32 chrX 34838042 34838420 -142135720 - THE1C LTR MaLR 0 375 1 2130 181 26 46 chrX 34838420 34838722 -142135418 + L1MA9 LINE L1 5992 6282 -30 320 307 0 9 chrX 34838735 34838849 -142135291 - L1MC4a LINE L1 -2428 5380 5268 923 196 12 120 chrX 34838849 34838901 -142135239 + MER58A DNA MER1_type 1 57 -2363 2225 92 0 3 chrX 34838901 34839217 -142134923 - AluY SINE Alu 0 315 1 923 196 12 120 chrX 34839217 34839374 -142134766 + MER58A DNA MER1_type 57 183 -2237 1327 142 163 75 chrX 34839374 34839706 -142134434 - MLT1A1 LTR MaLR 0 365 5 923 196 12 120 chrX 34839706 34839744 -142134396 + MER58A DNA MER1_type 183 223 -1 340 249 95 35 chrX 34839744 34839913 -142134227 - L1 LINE L1 -871 5275 5097 2414 69 0 31 chrX 34840087 34840406 -142133734 - AluY SINE Alu -2 309 1 983 217 85 9 chrX 34840476 34840794 -142133346 + L1MC4 LINE L1 7691 8032 -10 2446 133 25 14 chrX 34840932 34841294 -142132846 - MER47A DNA MER2_type 0 366 1 2222 113 0 3 chrX 34841318 34841610 -142132530 - AluSx SINE Alu -21 291 1 337 157 121 12 chrX 34841777 34841860 -142132280 - L1M4b LINE L1 -4500 2221 2130 1446 193 85 29 chrX 34841862 34842204 -142131936 + MLT1A2 LTR MaLR 1 361 -13 384 290 100 22 chrX 34842292 34842523 -142131617 - L1M4b LINE L1 -4766 1774 1526 4035 196 34 8 chrX 34842568 34843405 -142130735 - L1ME1 LINE L1 -2 6164 5307 466 372 54 18 chrX 34843504 34843894 -142130246 + MER89-int LTR ERV1 3512 3915 -2886 2620 197 154 66 chrX 34844337 34845181 -142128959 + LTR28 LTR ERV1 1 1020 0 1409 323 56 25 chrX 34845201 34846000 -142128140 + MER89-int LTR ERV1 2141 2964 -1683 2221 150 12 18 chrX 34846156 34846497 -142127643 - MER44D DNA MER2_type 0 609 1 1966 151 7 0 chrX 34846527 34846818 -142127322 - AluJo SINE Alu -15 297 5 768 261 0 19 chrX 34848696 34848907 -142125233 + L1M4 LINE L1 2390 2596 -3550 850 127 32 0 chrX 34848912 34849038 -142125102 + AluJb SINE Alu 162 291 -21 256 61 143 0 chrX 34849039 34849088 -142125052 + LTR64 LTR ERVK 503 558 0 255 0 0 0 chrX 34849088 34849118 -142125022 - L1M4b LINE L1 -5206 1334 1305 657 167 33 17 chrX 34849122 34849242 -142124898 - MSTC LTR MaLR -306 122 1 266 217 14 29 chrX 34849304 34849373 -142124767 - L1M4b LINE L1 -5685 757 690 2270 97 0 10 chrX 34849477 34849785 -142124355 - AluSg1 SINE Alu -4 305 1 407 346 21 17 chrX 34850700 34850940 -142123200 - PRIMA41-int LTR ERV1 -2899 4857 4617 198 103 0 0 chrX 34853001 34853030 -142121110 + (T)n Simple_repeat Simple_repeat 1 29 0 1361 167 35 125 chrX 34854345 34854770 -142119370 - PRIMA41-int LTR ERV1 -5183 1148 762 1704 185 11 3 chrX 34854773 34855060 -142119080 + AluJb SINE Alu 6 294 -18 1053 338 26 24 chrX 34855142 34855609 -142118531 - L1M4b LINE L1 -5183 1278 811 4512 145 32 101 chrX 34855642 34856089 -142118051 - L1M4c LINE L1 -5489 895 474 555 104 0 0 chrX 34856089 34856187 -142117953 - AluSg/x SINE Alu 0 309 212 4512 145 32 101 chrX 34856187 34856617 -142117523 - L1M4c LINE L1 -5910 474 16 1601 174 65 0 chrX 34856626 34856901 -142117239 - AluJo SINE Alu -19 293 1 318 188 12 50 chrX 34856902 34856982 -142117158 + L1M4 LINE L1 4845 4921 -1225 * 1724 92 17 8 chrX 34856977 34857236 -142116904 + L1PA10 LINE L1 5907 6167 0 962 201 15 57 chrX 34857236 34857500 -142116640 + L1M4 LINE L1 4907 5159 -987 1905 149 7 3 chrX 34858329 34858630 -142115510 - AluJo SINE Alu -10 302 1 432 220 22 0 chrX 34858846 34858937 -142115203 - L1M4b LINE L1 -5961 581 489 3256 76 5 13 chrX 34859052 34859501 -142114639 + LTR19B LTR ERV1 1 445 -135 12961 94 8 0 chrX 34859502 34861991 -142112149 + L1PA8 LINE L1 3666 6168 -4 201 162 0 0 chrX 34862120 34862157 -142111983 + A-rich Low_complexity Low_complexity 2 38 0 1003 107 0 0 chrX 34862157 34862297 -142111843 + LTR19A LTR ERV1 347 486 0 403 248 149 35 chrX 34862622 34862763 -142111377 - L2 LINE L2 0 3272 3116 525 268 80 35 chrX 34862947 34863347 -142110793 - L1M4 LINE L1 -3578 2568 2151 2153 104 0 55 chrX 34863437 34863764 -142110376 - AluSx SINE Alu -3 309 1 1104 98 0 20 chrX 34863796 34863949 -142110191 - L1PA10 LINE L1 -1 6167 6018 23 0 0 0 chrX 34864232 34864255 -142109885 + AT_rich Low_complexity Low_complexity 1 23 0 1014 120 0 0 chrX 34865753 34865897 -142108243 + FRAM SINE Alu 1 144 -382 2436 46 0 0 chrX 34865897 34866182 -142107958 + AluY SINE Alu 1 285 -26 1014 120 0 0 chrX 34866182 34866260 -142107880 + FRAM SINE Alu 143 390 0 1419 156 5 5 chrX 34866350 34866574 -142107566 + L1PA15 LINE L1 5942 6165 0 1201 117 0 124 chrX 34867427 34867676 -142106464 - AluJo SINE Alu -26 286 69 297 253 25 0 chrX 34868033 34868112 -142106028 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 237 267 0 0 chrX 34869559 34869619 -142104521 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 279 269 0 0 chrX 34869654 34869762 -142104378 + (CCCA)n Simple_repeat Simple_repeat 2 109 0 201 354 6 12 chrX 34871033 34871194 -142102946 + CT-rich Low_complexity Low_complexity 4 163 0 206 268 0 65 chrX 34871482 34871605 -142102535 + C-rich Low_complexity Low_complexity 2 116 0 2739 42 0 0 chrX 34872402 34872713 -142101427 - AluY SINE Alu 0 311 1 2215 97 27 0 chrX 34873429 34873727 -142100413 - AluSx SINE Alu -6 306 1 473 310 112 52 chrX 34873733 34874466 -142099674 - L1M4 LINE L1 -2700 3446 2670 2285 122 0 0 chrX 34874665 34874969 -142099171 - AluSx SINE Alu -8 304 1 1497 121 27 5 chrX 34875558 34875782 -142098358 + MER30 DNA MER1_type 2 230 0 1866 222 156 30 chrX 34875785 34876312 -142097828 + MLT1E LTR MaLR 1 593 0 241 250 45 23 chrX 34876357 34876445 -142097695 - HAL1b LINE L1 -923 425 336 275 248 57 0 chrX 34876964 34877069 -142097071 - MIR SINE MIR -60 148 38 625 283 43 75 chrX 34877298 34877828 -142096312 - L1ME4a LINE L1 -3 6118 5606 2074 128 3 3 chrX 34877845 34878151 -142095989 + AluSx SINE Alu 1 306 -6 1247 134 26 125 chrX 34878154 34878517 -142095623 + AluSx SINE Alu 2 333 0 1158 110 0 0 chrX 34879151 34879305 -142094835 - AluSg/x SINE Alu -25 287 134 2192 123 0 3 chrX 34879305 34879614 -142094526 - AluSx SINE Alu -4 308 1 426 242 21 0 chrX 34879653 34879748 -142094392 + MER94 DNA DNA 4 100 -34 938 203 16 5 chrX 34879805 34879992 -142094148 + MER5A DNA MER1_type 1 189 0 189 94 0 0 chrX 34880457 34880489 -142093651 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1827 129 0 22 chrX 34880499 34880777 -142093363 - AluSx SINE Alu -40 272 1 185 65 32 0 chrX 34880872 34880903 -142093237 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2207 103 0 27 chrX 34881078 34881378 -142092762 - AluSx SINE Alu -12 300 9 2756 193 14 52 chrX 34881447 34882023 -142092117 - MLT2B3 LTR ERVL 0 554 1 920 221 21 113 chrX 34882091 34882417 -142091723 + MLT1E-int LTR MaLR 1076 1371 0 2166 203 29 108 chrX 34882455 34883041 -142091099 + MLT1E LTR MaLR 52 591 -2 3666 24 0 0 chrX 34884448 34884863 -142089277 - L1PA4 LINE L1 -8 6147 5733 1817 19 0 0 chrX 34884863 34885068 -142089072 + L1P LINE L1 1671 1875 -4271 460 209 147 8 chrX 34885168 34885297 -142088843 - L1MB7 LINE L1 -31 6153 6007 3942 47 2 0 chrX 34885298 34885769 -142088371 + L1PA7 LINE L1 5682 6153 -1 37 0 0 0 chrX 34885769 34885806 -142088334 + AT_rich Low_complexity Low_complexity 1 37 0 279 274 43 74 chrX 34885814 34885960 -142088180 - L1M4 LINE L1 -2310 3836 3698 1787 104 108 32 chrX 34885960 34886096 -142088044 - AluSx SINE Alu -13 299 175 2413 77 0 7 chrX 34886096 34886394 -142087746 - AluY SINE Alu -15 296 1 1787 104 108 32 chrX 34886394 34886535 -142087605 - AluSx SINE Alu -137 175 1 279 274 43 74 chrX 34886535 34886618 -142087522 - L1M4 LINE L1 -2448 3698 3614 299 296 0 0 chrX 34886714 34886829 -142087311 - L1M4 LINE L1 -2674 3472 3358 2532 47 7 3 chrX 34886917 34887214 -142086926 - AluY SINE Alu -13 298 1 1673 141 16 1 chrX 34887369 34887646 -142086494 - L1MB7 LINE L1 -176 6008 5725 2322 164 13 8 chrX 34887675 34888058 -142086082 - MSTB1 LTR MaLR -47 385 1 1680 146 55 26 chrX 34888058 34888235 -142085905 - MSTB1-int LTR MaLR 0 1651 1460 2479 81 0 0 chrX 34888235 34888545 -142085595 + AluSx SINE Alu 1 310 -2 1680 146 55 26 chrX 34888545 34888676 -142085464 - MSTB1-int LTR MaLR -191 1460 1334 702 220 7 0 chrX 34888701 34888842 -142085298 - FRAM SINE Alu -30 146 5 21 0 0 0 chrX 34888915 34888936 -142085204 + AT_rich Low_complexity Low_complexity 1 21 0 995 185 6 29 chrX 34889745 34889918 -142084222 + FAM SINE Alu 1 169 -6 886 139 7 0 chrX 34890741 34890878 -142083262 - FLAM_C SINE Alu -5 138 1 441 235 48 7 chrX 34892010 34892144 -142081996 - MLT1H LTR MaLR -236 205 34 304 358 11 32 chrX 34892325 34892512 -142081628 + L1 LINE L1 4665 4847 -1299 818 150 0 0 chrX 34892558 34892678 -142081462 + AluSq/x SINE Alu 1 120 -193 23 0 0 0 chrX 34892678 34892701 -142081439 + AT_rich Low_complexity Low_complexity 1 23 0 245 234 0 31 chrX 34892730 34892794 -142081346 + L1 LINE L1 4924 4985 -1161 509 219 19 52 chrX 34892887 34893042 -142081098 + MER90 LTR ERV1 6 155 -420 280 214 83 12 chrX 34893357 34893441 -142080699 + MIR SINE MIR 160 249 -13 1859 162 0 26 chrX 34893467 34893770 -142080370 - AluJb SINE Alu -12 300 6 263 322 78 24 chrX 34894445 34894700 -142079440 - L1M4 LINE L1 -2000 4146 3878 542 208 20 0 chrX 34894707 34894808 -142079332 - HERV16 LTR ERVL -3158 1838 1736 1545 266 71 33 chrX 34895015 34895561 -142078579 - HERV16 LTR ERVL -3819 1177 611 2098 216 81 18 chrX 34895562 34896066 -142078074 + MLT1F LTR MaLR 1 536 -6 1321 254 33 15 chrX 34896072 34896407 -142077733 - HERV16 LTR ERVL -4382 614 274 698 310 10 5 chrX 34896441 34896644 -142077496 - HERV16 LTR ERVL -4791 205 2 1415 244 114 8 chrX 34896645 34897030 -142077110 - LTR16A LTR ERVL 0 450 25 906 243 0 6 chrX 34897482 34897659 -142076481 + MER41D LTR ERV1 382 557 0 628 219 0 17 chrX 34898047 34898166 -142075974 - LTR28 LTR ERV1 0 1020 904 952 214 249 49 chrX 34898167 34898536 -142075604 - LTR28 LTR ERV1 -270 750 308 718 159 194 3 chrX 34898545 34898684 -142075456 - LTR28 LTR ERV1 -600 678 1 229 321 37 30 chrX 34898973 34899107 -142075033 - MER87 LTR ERV1 0 541 407 207 0 0 0 chrX 34899523 34899546 -142074594 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 244 206 59 15 chrX 34899596 34899664 -142074476 + LTR58 LTR ERV1 350 420 -259 457 267 72 78 chrX 34900429 34900788 -142073352 - L1MDa LINE L1 -5840 700 344 1931 132 3 21 chrX 34900974 34901261 -142072879 - AluJo SINE Alu -17 295 14 1752 223 31 13 chrX 34901572 34901963 -142072177 + MER90 LTR ERV1 217 614 0 2654 142 31 10 chrX 34903080 34903497 -142070643 - MSTB LTR MaLR 0 426 1 189 107 0 0 chrX 34903858 34903886 -142070254 + (TAA)n Simple_repeat Simple_repeat 1 28 0 258 32 0 0 chrX 34903943 34903974 -142070166 + (CA)n Simple_repeat Simple_repeat 2 32 0 784 200 114 11 chrX 34904094 34904269 -142069871 - L1MD2 LINE L1 -270 6089 5897 337 224 19 19 chrX 34904266 34904373 -142069767 - L1M4 LINE L1 -2193 3953 3847 * 254 154 39 0 chrX 34904455 34904507 -142069633 + MIR SINE MIR 178 231 -31 1391 264 33 41 chrX 34904602 34905115 -142069025 - MLT1H LTR MaLR -4 545 3 1446 265 20 47 chrX 34905118 34905654 -142068486 + HAL1 LINE L1 1978 2499 -8 2355 101 0 3 chrX 34905700 34905998 -142068142 + AluSx SINE Alu 1 297 -15 2348 80 0 13 chrX 34906115 34906414 -142067726 + AluSc SINE Alu 1 295 -14 389 313 102 19 chrX 34906521 34906844 -142067296 + L1ME LINE L1 5410 5759 -362 2378 101 0 0 chrX 34956881 34957178 -142016962 + AluSx SINE Alu 1 297 -15 24 32 0 0 chrX 34957231 34957262 -142016878 + AT_rich Low_complexity Low_complexity 1 31 0 251 292 62 21 chrX 34957625 34957769 -142016371 - L1M4 LINE L1 -3104 3042 2893 25 0 0 0 chrX 34957798 34957823 -142016317 + AT_rich Low_complexity Low_complexity 1 25 0 1803 207 128 22 chrX 34957836 34958351 -142015789 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chrX 34959017 34959042 -142015098 + AT_rich Low_complexity Low_complexity 1 25 0 6786 70 18 4 chrX 34959048 34960024 -142014116 - L1PA13 LINE L1 -11 6152 5172 1987 168 10 5 chrX 34960024 34960412 -142013728 + L1 LINE L1 4384 4773 -1373 * 7933 229 37 10 chrX 34960410 34961016 -142013124 - L1MCb LINE L1 -1581 5360 4772 2524 67 0 0 chrX 34961016 34961315 -142012825 - AluSp SINE Alu -14 299 1 7933 229 37 10 chrX 34961315 34963141 -142010999 - L1MCb LINE L1 -2169 4772 2810 2263 102 0 7 chrX 34963141 34963435 -142010705 - AluSq SINE Alu -21 292 1 7933 229 37 10 chrX 34963435 34963475 -142010665 - L1MCb LINE L1 -4131 2810 2773 2178 152 22 8 chrX 34963476 34963877 -142010263 + MER95 LTR ERV 1 407 -24 502 214 28 41 chrX 34963878 34964098 -142010042 - L1MCb LINE L1 -4223 2753 2412 1294 98 69 0 chrX 34964098 34964301 -142009839 - L1PA16 LINE L1 -7 6159 5943 502 214 28 41 chrX 34964301 34964379 -142009761 - L1MCb LINE L1 -4564 2412 2334 * 7433 168 65 24 chrX 34964377 34965754 -142008386 + L1PA12 LINE L1 10 1442 -6139 2492 198 2 0 chrX 34965835 34966351 -142007789 + L1P LINE L1 2616 3132 -3014 * 6553 104 12 4 chrX 34966347 34967572 -142006568 + L1PA14 LINE L1 4924 6160 -1 1916 248 64 10 chrX 34967566 34968260 -142005880 - L1MCb LINE L1 -4591 2350 1536 * 668 273 115 51 chrX 34968251 34968643 -142005497 - L1MCb LINE L1 -5702 720 3 * 277 253 13 0 chrX 34969540 34969615 -142004525 - MIR SINE MIR -8 254 179 385 256 8 30 chrX 34969666 34969799 -142004341 - L1 LINE L1 -1092 5054 4925 1607 186 38 78 chrX 34969836 34970233 -142003907 + MLT1C LTR MaLR 80 460 -7 283 297 70 41 chrX 34970297 34970519 -142003621 - L1 LINE L1 -1285 4861 4629 356 291 93 29 chrX 34970614 34970808 -142003332 + MLT1H LTR MaLR 3 252 -297 3019 128 36 16 chrX 34971338 34971430 -142002710 + L1MA4 LINE L1 5795 5884 -416 2232 132 0 0 chrX 34971430 34971733 -142002407 + AluSx SINE Alu 1 303 -9 3019 128 36 16 chrX 34971733 34972134 -142002006 + L1MA4 LINE L1 5884 6298 -2 895 262 56 77 chrX 34972663 34973128 -142001012 - LTR16A1 LTR ERVL -2 455 1 333 0 0 0 chrX 34973514 34973551 -142000589 + (TG)n Simple_repeat Simple_repeat 1 37 0 3078 110 16 12 chrX 34973673 34974099 -142000041 - MSTA LTR MaLR 0 428 1 186 43 0 0 chrX 34975559 34975582 -141998558 + (ATG)n Simple_repeat Simple_repeat 2 24 0 609 234 25 98 chrX 34975598 34975833 -141998307 - MIR SINE MIR -11 251 34 3908 106 11 30 chrX 34976001 34976538 -141997602 - MER1A DNA MER1_type 0 527 1 402 154 0 0 chrX 34976786 34976864 -141997276 + (CA)n Simple_repeat Simple_repeat 1 78 0 313 263 60 23 chrX 34977653 34977786 -141996354 + L1MC4a LINE L1 6057 6194 -1614 23 33 0 0 chrX 34978158 34978188 -141995952 + AT_rich Low_complexity Low_complexity 1 30 0 15178 49 0 9 chrX 34978191 34980049 -141994091 + L1P LINE L1 1 1842 -4304 * 43706 33 21 1 chrX 34980047 34986073 -141988067 - L1PA2 LINE L1 -1 6154 3 21860 25 0 0 chrX 34986072 34988617 -141985523 + L1P LINE L1 1833 4377 -1769 * 728 168 4 16 chrX 34988608 34988754 -141985386 + L1MC5 LINE L1 7100 7243 -733 * 901 249 62 21 chrX 34988881 34989170 -141984970 + L1MC5 LINE L1 7270 7570 -391 1011 158 6 18 chrX 34989209 34989380 -141984760 - AluJb SINE Alu -7 305 137 5052 166 84 19 chrX 34989381 34990272 -141983868 + L1MD2 LINE L1 4848 5680 -679 251 27 0 27 chrX 34990272 34990309 -141983831 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 5052 166 84 19 chrX 34990309 34990376 -141983764 + L1MD2 LINE L1 5680 5741 -618 2165 153 37 3 chrX 34990376 34990730 -141983410 - MER47A DNA MER2_type 0 366 1 5052 166 84 19 chrX 34990730 34991025 -141983115 + L1MD2 LINE L1 5741 6215 -144 2084 138 67 59 chrX 34991071 34991355 -141982785 + MSTD LTR MaLR 1 290 -106 2280 123 0 0 chrX 34991355 34991665 -141982475 - AluSq SINE Alu -3 310 1 2084 138 67 59 chrX 34991665 34991771 -141982369 + MSTD LTR MaLR 290 394 -2 491 189 161 96 chrX 34991773 34992033 -141982107 + L1MC5 LINE L1 7609 7885 -76 2013 169 33 19 chrX 34992239 34992599 -141981541 + MLT1A1 LTR MaLR 1 365 0 877 172 14 0 chrX 34992809 34992954 -141981186 + MER58B DNA MER1_type 195 341 0 3421 150 16 2 chrX 34992984 34993498 -141980642 + Tigger7 DNA MER2_type 1 521 -212 563 178 0 0 chrX 34993497 34993587 -141980553 + Tigger7 DNA MER2_type 2400 2489 -2 * 1230 177 10 0 chrX 34993635 34993838 -141980302 - MER70B LTR ERVL -361 217 13 3161 165 4 0 chrX 34994151 34994618 -141979522 + MER70A LTR ERVL 1 469 -3 298 217 0 0 chrX 34995186 34995246 -141978894 - LOR1-int LTR ERV1 -251 7505 7446 278 333 53 53 chrX 34995220 34995391 -141978749 - LOR1-int LTR ERV1 -253 6869 6699 * 428 178 14 0 chrX 34995462 34995535 -141978605 - MER49 LTR ERV1 -163 760 687 857 164 88 6 chrX 34995552 34995711 -141978429 - LOR1-int LTR ERV1 -181 6150 5979 12843 152 55 59 chrX 34995906 34998592 -141975548 - LOR1-int LTR ERV1 -514 5432 2758 2542 162 24 22 chrX 34998627 34999090 -141975050 - LOR1-int LTR ERV1 -2594 2286 1823 250 259 0 17 chrX 34999090 34999148 -141974992 - tRNA-Gly-GGG tRNA tRNA -10 64 8 641 190 58 8 chrX 34999150 34999271 -141974869 - LOR1-int LTR ERV1 -3120 1760 1634 * 647 136 31 14 chrX 34999260 34999453 -141974687 - LOR1-int LTR ERV1 -2530 4068 1701 253 27 0 0 chrX 34999484 34999521 -141974619 - MER41B LTR ERV1 -87 548 512 213 39 0 0 chrX 35000841 35000867 -141973273 + (TCC)n Simple_repeat Simple_repeat 1 26 0 511 233 127 20 chrX 35002002 35002152 -141971988 - MIR3 SINE MIR -22 186 21 198 0 0 0 chrX 35003709 35003731 -141970409 + (A)n Simple_repeat Simple_repeat 1 22 0 469 172 10 20 chrX 35005093 35005191 -141968949 - MER41B LTR ERV1 -107 528 432 2185 145 33 8 chrX 35005191 35005557 -141968583 - THE1C LTR MaLR 0 375 1 * 3079 111 2 2 chrX 35005557 35005993 -141968147 - MER41B LTR ERV1 -199 436 1 5893 116 17 17 chrX 35005995 35006895 -141967245 - MER41B-int LTR ERV1 -3 5943 5044 293 53 0 0 chrX 35006881 35006919 -141967221 - MER41B-int LTR ERV1 -1724 4222 4185 * 225 0 0 0 chrX 35006920 35006945 -141967195 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 9422 125 58 30 chrX 35006945 35008837 -141965303 - MER41B-int LTR ERV1 -2045 5005 2535 3016 98 26 32 chrX 35008812 35009273 -141964867 - MER41B-int LTR ERV1 -4157 1789 1332 * 4847 114 18 31 chrX 35009257 35009352 -141964788 - MER41B-int LTR ERV1 -5243 703 608 2229 81 14 7 chrX 35009352 35009647 -141964493 + AluSc SINE Alu 1 297 -12 4847 114 18 31 chrX 35009647 35010263 -141963877 - MER41B-int LTR ERV1 -5338 608 1 1027 93 33 0 chrX 35010263 35010413 -141963727 - MER41B LTR ERV1 0 554 400 3243 152 89 44 chrX 35010414 35011159 -141962981 - LTR36-int LTR ERV1 -6482 1638 861 859 240 26 30 chrX 35011231 35011464 -141962676 - LTR36-int LTR ERV1 -2723 1562 1331 621 283 7 87 chrX 35011792 35012078 -141962062 - LTR36-int LTR ERV1 -1422 364 102 1548 207 220 29 chrX 35012134 35012647 -141961493 - LTR36 LTR ERV1 0 611 1 3574 128 129 38 chrX 35012651 35013242 -141960898 + LTR8A LTR ERV1 1 661 -66 2280 81 0 17 chrX 35013242 35013538 -141960602 - AluSc SINE Alu -18 291 1 3574 128 129 38 chrX 35013538 35013612 -141960528 + LTR8A LTR ERV1 661 727 0 644 111 30 0 chrX 35013612 35013711 -141960429 + L1MB2 LINE L1 6068 6169 -2 718 196 60 91 chrX 35013753 35013952 -141960188 - LTR43 LTR ERV1 -287 315 123 445 110 24 0 chrX 35014094 35014176 -141959964 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 595 298 76 41 chrX 35014210 35014308 -141959832 + L1M4 LINE L1 3722 3815 -2331 2656 166 140 17 chrX 35014308 35014844 -141959296 - LTR43 LTR ERV1 0 602 1 595 298 76 41 chrX 35014844 35015231 -141958909 + L1M4 LINE L1 3815 4224 -1922 1526 264 133 59 chrX 35015328 35015990 -141958150 + MER50 LTR ERV1 1 711 -23 193 295 49 0 chrX 35016510 35016571 -141957569 + L2 LINE L2 2992 3055 -217 2223 128 22 33 chrX 35016805 35017173 -141956967 + THE1B LTR MaLR 1 364 0 415 229 36 52 chrX 35017298 35017490 -141956650 + L1MC5 LINE L1 7713 7901 -60 869 313 109 26 chrX 35017553 35017681 -141956459 + L1ME LINE L1 2328 2444 -3702 237 65 0 0 chrX 35017681 35017712 -141956428 + (TG)n Simple_repeat Simple_repeat 2 32 0 869 313 109 26 chrX 35017712 35018344 -141955796 + L1ME LINE L1 2444 3151 -2995 844 299 52 17 chrX 35018344 35018752 -141955388 + L1ME LINE L1 5383 5804 -358 267 253 0 0 chrX 35019076 35019151 -141954989 - L1ME3 LINE L1 -9 6153 6079 * 5980 183 117 96 chrX 35019150 35020646 -141953494 + L1MCa LINE L1 19 1481 -4945 2442 136 56 10 chrX 35020646 35021059 -141953081 - MSTB1 LTR MaLR 0 432 1 5980 183 117 96 chrX 35021059 35021915 -141952225 + L1MCa LINE L1 1481 2431 -3995 2285 100 21 32 chrX 35021915 35022294 -141951846 - THE1C LTR MaLR 0 375 1 5980 183 117 96 chrX 35022294 35022460 -141951680 + L1MCa LINE L1 2431 2592 -3834 22 94 0 0 chrX 35022538 35022602 -141951538 + AT_rich Low_complexity Low_complexity 1 64 0 839 240 17 4 chrX 35022709 35022942 -141951198 + L1MC4 LINE L1 5351 5586 -2222 1015 269 68 54 chrX 35023326 35023441 -141950699 + L1MC4 LINE L1 7094 7206 -836 2605 169 51 6 chrX 35023441 35023932 -141950208 - LTR44 LTR ERV1 -4 515 3 1015 269 68 54 chrX 35023932 35024488 -141949652 + L1MC4 LINE L1 7206 7775 -267 375 187 13 0 chrX 35024520 35024595 -141949545 + L1MD2 LINE L1 6057 6132 -227 877 201 0 0 chrX 35024598 35024752 -141949388 + FRAM SINE Alu 2 155 -21 2171 114 0 7 chrX 35024759 35025056 -141949084 + AluSx SINE Alu 1 295 -17 236 114 0 0 chrX 35025176 35025211 -141948929 + L1MC4 LINE L1 7793 7827 -215 1678 198 16 16 chrX 35025213 35025672 -141948468 - MER89 LTR ERV1 -1 558 1 817 137 0 0 chrX 35025987 35026104 -141948036 + FLAM_C SINE Alu 1 117 -16 558 0 0 0 chrX 35026109 35026171 -141947969 + (TG)n Simple_repeat Simple_repeat 2 63 0 374 230 32 8 chrX 35026354 35026480 -141947660 + L1MC4 LINE L1 7905 8033 -9 3153 77 21 10 chrX 35026862 35027342 -141946798 + L1MA1 LINE L1 5660 6144 -158 2390 77 0 0 chrX 35027348 35027635 -141946505 - AluSg1 SINE Alu -22 287 1 24 0 0 0 chrX 35027635 35027659 -141946481 + AT_rich Low_complexity Low_complexity 1 24 0 302 270 20 60 chrX 35027764 35027864 -141946276 + L2 LINE L2 3173 3268 -45 3422 61 30 2 chrX 35028468 35028909 -141945231 - MLT2A2 LTR ERVL 0 453 1 344 111 19 0 chrX 35028971 35029025 -141945115 + AluJ/FRAM SINE Alu 228 282 -20 207 0 0 0 chrX 35029028 35029051 -141945089 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 2029 130 0 26 chrX 35029262 35029570 -141944570 - AluJo SINE Alu -12 300 1 1002 239 52 38 chrX 35029678 35029755 -141944385 - L1ME LINE L1 -390 6166 6092 2637 108 60 34 chrX 35029755 35029946 -141944194 + MSTC LTR MaLR 1 185 -243 1805 79 146 0 chrX 35029946 35030199 -141943941 + AluSg SINE Alu 1 290 -20 2637 108 60 34 chrX 35030199 35030422 -141943718 + MSTC LTR MaLR 185 426 -2 1002 239 52 38 chrX 35030422 35030767 -141943373 - L1ME LINE L1 -464 6092 5738 1732 215 39 23 chrX 35030977 35031367 -141942773 + MSTD LTR MaLR 1 396 0 2997 157 76 7 chrX 35031404 35032022 -141942118 + LTR65 LTR ERV1 9 669 0 259 308 94 43 chrX 35032140 35032257 -141941883 - L2 LINE L2 -173 3099 2977 311 286 133 24 chrX 35033556 35033766 -141940374 - L1M4 LINE L1 -3234 2912 2680 5091 224 47 39 chrX 35033886 35035163 -141938977 - L1ME LINE L1 -1139 5401 4135 1910 162 7 0 chrX 35035163 35035460 -141938680 - AluJb SINE Alu -13 299 1 5091 224 47 39 chrX 35035460 35035716 -141938424 - L1ME LINE L1 -2405 4135 3882 2181 118 16 25 chrX 35035716 35036080 -141938060 + MER46B DNA MER2_type 1 236 0 5091 224 47 39 chrX 35036080 35036200 -141937940 - L1ME LINE L1 -2658 3882 3764 1519 104 45 0 chrX 35036200 35036420 -141937720 - MER30 DNA MER1_type 0 230 1 5091 224 47 39 chrX 35036420 35036507 -141937633 - L1ME LINE L1 -2776 3764 3646 2564 60 0 13 chrX 35036868 35037182 -141936958 - AluSp SINE Alu -2 311 2 1982 206 76 5 chrX 35038086 35038654 -141935486 - L1ME LINE L1 -2875 3665 3058 682 226 41 68 chrX 35038644 35038936 -141935204 - L1ME LINE L1 -6152 388 105 * 2172 116 6 10 chrX 35038988 35039299 -141934841 - AluSx SINE Alu 0 312 3 180 111 0 0 chrX 35039463 35039490 -141934650 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 1103 160 19 0 chrX 35039497 35039710 -141934430 - L1MB8 LINE L1 -311 5867 5651 245 152 0 0 chrX 35039745 35039791 -141934349 - L1MB8 LINE L1 -741 5433 5388 297 0 0 0 chrX 35039808 35039841 -141934299 + (CA)n Simple_repeat Simple_repeat 2 34 0 377 279 115 67 chrX 35039848 35039900 -141934240 - L1M4 LINE L1 -2888 3258 3210 1960 160 0 7 chrX 35039900 35040200 -141933940 - AluJb SINE Alu -14 298 1 377 279 115 67 chrX 35040200 35040506 -141933634 - L1M4 LINE L1 -2936 3210 2869 3885 164 9 40 chrX 35040527 35041334 -141932806 - L1MB8 LINE L1 -9 6169 5388 202 150 0 25 chrX 35041521 35041561 -141932579 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 183 338 34 74 chrX 35041985 35042133 -141932007 + MIR SINE MIR 102 243 -19 * 326 351 126 14 chrX 35042114 35042336 -141931804 - MIR SINE MIR -10 252 6 762 249 118 6 chrX 35043150 35043479 -141930661 - HAL1 LINE L1 -212 2295 1930 444 252 43 26 chrX 35043489 35043604 -141930536 - MIR SINE MIR -1 261 145 1092 128 0 0 chrX 35043604 35043753 -141930387 - FRAM SINE Alu -26 150 2 340 252 77 17 chrX 35043753 35043857 -141930283 - MIR SINE MIR -62 146 58 1042 221 76 7 chrX 35043873 35044149 -141929991 - HAL1 LINE L1 -580 1927 1633 228 259 0 25 chrX 35044211 35044292 -141929848 - HAL1 LINE L1 -857 1650 1572 2490 57 0 3 chrX 35044294 35044590 -141929550 - AluY SINE Alu -16 295 1 348 263 75 19 chrX 35044724 35044937 -141929203 - HAL1 LINE L1 -1322 1185 961 1468 110 48 13 chrX 35045011 35045238 -141928902 + MER46A DNA MER2_type 1 235 -1 22 70 0 0 chrX 35045402 35045445 -141928695 + AT_rich Low_complexity Low_complexity 1 43 0 342 263 61 0 chrX 35045463 35045562 -141928578 - L1ME LINE L1 -450 5720 5616 241 239 0 28 chrX 35045578 35045649 -141928491 - L1ME3A LINE L1 -8 6162 6094 2437 95 0 13 chrX 35045761 35046078 -141928062 + AluSq SINE Alu 1 313 0 1063 233 109 31 chrX 35046082 35046606 -141927534 + L1ME2 LINE L1 5203 5766 -404 800 182 8 0 chrX 35046606 35046738 -141927402 + FLAM_C SINE Alu 1 133 0 307 216 29 29 chrX 35046764 35046866 -141927274 + L1ME2 LINE L1 5847 5948 -222 314 289 47 84 chrX 35046945 35047135 -141927005 + L1ME2 LINE L1 5969 6151 -13 405 58 0 0 chrX 35047259 35047311 -141926829 + (CA)n Simple_repeat Simple_repeat 1 52 0 1126 280 27 43 chrX 35047348 35047976 -141926164 - L1MC4a LINE L1 -1894 5914 5297 305 286 33 66 chrX 35048156 35048338 -141925802 - L1MC4a LINE L1 -1090 5056 4881 13999 104 23 74 chrX 35048362 35049554 -141924586 - Tigger1 DNA MER2_type 0 2418 1167 2462 63 0 17 chrX 35049554 35049855 -141924285 - AluSc SINE Alu -13 296 1 13999 104 23 74 chrX 35049855 35049918 -141924222 - Tigger1 DNA MER2_type -1251 1167 1102 1800 173 10 13 chrX 35049918 35050225 -141923915 - AluJo SINE Alu -6 306 1 13999 104 23 74 chrX 35050225 35051189 -141922951 - Tigger1 DNA MER2_type -1316 1102 341 2336 75 0 3 chrX 35051189 35051481 -141922659 + AluSg1 SINE Alu 1 291 -18 13999 104 23 74 chrX 35051481 35051805 -141922335 - Tigger1 DNA MER2_type -2077 341 2 21 0 0 0 chrX 35052026 35052047 -141922093 + AT_rich Low_complexity Low_complexity 1 21 0 2313 125 0 0 chrX 35052142 35052454 -141921686 + AluSx SINE Alu 1 312 0 2069 97 30 34 chrX 35053038 35053336 -141920804 + AluSx SINE Alu 1 297 -15 280 270 237 5 chrX 35053900 35054115 -141920025 + L2 LINE L2 1477 1741 -1573 394 260 46 66 chrX 35054877 35055073 -141919067 - L1M4 LINE L1 -3715 2431 2240 2467 74 3 7 chrX 35055184 35055494 -141918646 + AluSp SINE Alu 1 309 -4 35 41 0 0 chrX 35055541 35055590 -141918550 + AT_rich Low_complexity Low_complexity 1 49 0 1496 184 110 11 chrX 35055993 35056357 -141917783 - LTR40b LTR ERVL 0 462 63 292 164 194 15 chrX 35056373 35056440 -141917700 + MER21B LTR ERV1 15 93 -770 1169 193 94 33 chrX 35056459 35056554 -141917586 + MER21B LTR ERV1 19 107 -756 1853 72 0 25 chrX 35056554 35056790 -141917350 - AluY SINE Alu -15 296 67 1169 193 94 33 chrX 35056790 35056969 -141917171 + MER21B LTR ERV1 107 310 -553 458 186 78 10 chrX 35056978 35057080 -141917060 + MER21B LTR ERV1 564 672 -191 573 214 17 0 chrX 35057114 35057231 -141916909 + MER21B LTR ERV1 312 430 -433 372 218 23 0 chrX 35057267 35057354 -141916786 + MER21B LTR ERV1 21 109 -754 1385 196 88 6 chrX 35057355 35057708 -141916432 + MER21B LTR ERV1 431 812 -51 368 179 0 0 chrX 35057745 35057812 -141916328 - LTR40a LTR ERVL -449 70 4 804 203 33 107 chrX 35057814 35058085 -141916055 - HERVL40 LTR ERVL -3 5527 5277 587 302 71 44 chrX 35058056 35058466 -141915674 - MER89-int LTR ERV1 -298 6503 6083 * 2249 78 33 16 chrX 35058621 35058927 -141915213 + AluSq SINE Alu 1 311 -2 1560 245 86 14 chrX 35059075 35059589 -141914551 - MER92C LTR ERV1 -3 551 1 717 329 19 22 chrX 35059877 35060287 -141913853 - MER92C-int LTR ERV1 -248 6553 6145 8261 242 51 19 chrX 35060297 35062496 -141911644 - HERVL40 LTR ERVL -1284 4246 1977 557 232 29 0 chrX 35062503 35062641 -141911499 - LTR40b LTR ERVL -15 447 306 2429 163 66 79 chrX 35062650 35063165 -141910975 - MER67C LTR ERV1 0 710 205 3531 76 13 4 chrX 35063165 35063640 -141910500 + L1PA10 LINE L1 5680 6158 -10 2429 163 66 79 chrX 35063640 35063810 -141910330 - MER67C LTR ERV1 -505 205 34 297 51 0 0 chrX 35066040 35066079 -141908061 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2058 139 3 0 chrX 35066082 35066370 -141907770 - AluSx SINE Alu -23 289 1 180 0 0 0 chrX 35070029 35070049 -141904091 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2098 127 0 3 chrX 35070051 35070343 -141903797 - AluSx SINE Alu -21 291 1 2527 188 86 28 chrX 35072060 35072714 -141901426 - MER67C LTR ERV1 0 710 19 317 232 30 50 chrX 35072740 35072839 -141901301 - LTR40b LTR ERVL -180 282 186 534 214 32 0 chrX 35072866 35072992 -141901148 - LTR40c LTR ERVL -332 133 4 3730 275 44 53 chrX 35072999 35074558 -141899582 - HERVL40 LTR ERVL -3564 1966 422 488 264 21 14 chrX 35074709 35074853 -141899287 - HERVL40 LTR ERVL -4354 1176 1032 761 267 102 8 chrX 35074883 35075119 -141899021 - HERVL40 LTR ERVL -5201 329 72 1950 170 35 51 chrX 35075119 35075612 -141898528 - MLT1D LTR MaLR 0 505 21 304 217 0 0 chrX 35075643 35075703 -141898437 - HERVL40 LTR ERVL -5454 76 17 1834 233 81 6 chrX 35075717 35076198 -141897942 - LTR40a LTR ERVL -2 517 1 775 204 40 55 chrX 35076198 35076509 -141897631 - L1MC5 LINE L1 -393 7415 7269 1947 155 3 3 chrX 35076600 35076890 -141897250 - AluJb SINE Alu -22 290 1 267 233 0 14 chrX 35076912 35076985 -141897155 - L1MC5 LINE L1 -818 7143 7072 1873 118 10 3 chrX 35077150 35077439 -141896701 - MSTC LTR MaLR 0 428 138 2733 112 87 0 chrX 35077448 35077860 -141896280 + MER83 LTR ERV1 1 448 0 207 0 0 0 chrX 35078145 35078168 -141895972 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1488 177 51 4 chrX 35078170 35078424 -141895716 - AluJo SINE Alu -30 282 17 2216 204 63 61 chrX 35078458 35079085 -141895055 - L1ME2 LINE L1 -1 6097 5464 2202 126 3 0 chrX 35079085 35079395 -141894745 + AluSx SINE Alu 1 311 -1 2216 204 63 61 chrX 35079395 35079948 -141894192 - L1ME2 LINE L1 -634 5464 4914 350 210 132 59 chrX 35079945 35080164 -141893976 - L1ME2 LINE L1 -2953 3127 2893 * 903 214 23 61 chrX 35080167 35080342 -141893798 + MLT1E LTR MaLR 1 164 -429 2454 79 0 0 chrX 35080342 35080646 -141893494 + AluSg1 SINE Alu 1 304 -5 903 214 23 61 chrX 35080646 35080732 -141893408 + MLT1E LTR MaLR 164 252 -341 834 201 64 29 chrX 35080734 35080938 -141893202 - MLT1E LTR MaLR -62 531 321 275 183 0 17 chrX 35080936 35080996 -141893144 + MLT1F LTR MaLR 484 542 0 * 302 215 149 9 chrX 35081000 35081107 -141893033 + MLT1F-int LTR MaLR 5 126 -1609 302 328 41 0 chrX 35081131 35081253 -141892887 + MLT1F-int LTR MaLR 756 882 -489 1384 235 88 52 chrX 35081452 35081834 -141892306 - L1ME2 LINE L1 -4789 1291 924 1418 160 32 120 chrX 35081834 35082234 -141891906 - MLT1A1 LTR MaLR 0 365 1 1384 235 88 52 chrX 35082234 35082959 -141891181 - L1ME2 LINE L1 -5156 924 257 1032 189 17 0 chrX 35082964 35083144 -141890996 - AluJb SINE Alu 0 312 130 443 270 22 29 chrX 35083194 35083331 -141890809 - L1ME2 LINE L1 -5903 167 32 1363 197 56 17 chrX 35083359 35083719 -141890421 - L1M4 LINE L1 -1157 4989 4616 553 225 189 13 chrX 35083727 35083954 -141890186 + L1M4 LINE L1 2562 2828 -3318 24 0 0 0 chrX 35084132 35084156 -141889984 + AT_rich Low_complexity Low_complexity 1 24 0 1929 155 48 109 chrX 35084537 35085034 -141889106 + MLT1C LTR MaLR 1 467 0 2716 149 13 12 chrX 35085034 35085628 -141888512 + MLT1C-int LTR MaLR 1 709 -662 281 186 0 0 chrX 35085624 35085683 -141888457 + MLT1C-int LTR MaLR 829 887 -484 * 270 317 10 0 chrX 35085745 35085846 -141888294 + MLT-int LTR MaLR 676 777 -958 2879 96 36 12 chrX 35085974 35086392 -141887748 - MSTA LTR MaLR 0 428 1 14232 177 15 7 chrX 35086791 35089422 -141884718 - ERVL LTR ERVL -2402 3362 642 2174 184 2 41 chrX 35089416 35089883 -141884257 - MER31B-int LTR ERV1 -4157 779 331 * 864 113 0 0 chrX 35090075 35090190 -141883950 + AluSg/x SINE Alu 187 301 -11 747 182 63 0 chrX 35090190 35090333 -141883807 - MER31B-int LTR ERV1 -4775 161 10 1633 142 24 62 chrX 35090376 35090770 -141883370 - MER31B LTR ERV1 0 661 93 1542 158 19 0 chrX 35090775 35091034 -141883106 - ERVL LTR ERVL -695 5069 4806 2028 143 25 81 chrX 35091054 35091496 -141882644 + MLT1C-int LTR MaLR 955 1371 0 1218 128 102 13 chrX 35091498 35091733 -141882407 + MLT1C LTR MaLR 3 258 -209 1050 200 32 56 chrX 35091727 35092012 -141882128 + MLT1C LTR MaLR 190 467 0 * 325 221 18 35 chrX 35092944 35092963 -141881177 - L1MA10 LINE L1 0 6334 6316 5897 218 56 26 chrX 35092963 35094241 -141879899 - L1ME2 LINE L1 -9 6089 4851 2863 181 11 40 chrX 35094241 35094815 -141879325 - MER74A LTR ERVL 0 558 2 5897 218 56 26 chrX 35094815 35096241 -141877899 - L1ME2 LINE L1 -1247 4851 3307 552 212 208 5 chrX 35096233 35096445 -141877695 - L1ME2 LINE L1 -3330 2750 2496 * 1393 210 11 16 chrX 35096463 35096834 -141877306 + L1M4 LINE L1 4625 4993 -1153 1211 296 66 24 chrX 35096954 35097592 -141876548 - L1ME2 LINE L1 -5404 666 2 1595 213 65 46 chrX 35097592 35098257 -141875883 - L1M4 LINE L1 -1817 4329 3579 584 237 53 38 chrX 35098297 35098563 -141875577 - L1M4 LINE L1 -2552 3594 3325 1652 231 44 11 chrX 35098599 35099150 -141874990 + L1ME3 LINE L1 2405 2973 -3173 1060 68 23 0 chrX 35099150 35099283 -141874857 + AluSx SINE Alu 1 136 -176 13300 17 0 0 chrX 35099283 35101600 -141872540 + L1PA4 LINE L1 3837 6152 -3 1364 117 0 0 chrX 35101625 35101813 -141872327 + AluSx SINE Alu 119 306 -4 2167 93 4 4 chrX 35102929 35103209 -141870931 + AluSx SINE Alu 19 298 -14 959 284 35 15 chrX 35103959 35104413 -141869727 + L1ME3 LINE L1 3172 3634 -2512 2981 196 55 49 chrX 35104420 35105382 -141868758 + L1ME3 LINE L1 5136 6090 -72 278 156 31 0 chrX 35105435 35105499 -141868641 + L1ME3 LINE L1 6096 6161 -1 241 313 0 20 chrX 35105572 35105671 -141868469 - L1ME LINE L1 -631 5535 5439 207 0 0 0 chrX 35105879 35105902 -141868238 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 359 136 0 0 chrX 35105908 35105974 -141868166 - L1 LINE L1 -2130 4016 3951 5170 28 3 0 chrX 35105986 35106589 -141867551 - L1PA3 LINE L1 0 6155 5551 2327 20 5 0 chrX 35106589 35107018 -141867122 + L1PA3 LINE L1 5117 5547 -608 181 254 17 17 chrX 35108794 35108853 -141865287 - L2 LINE L2 0 3313 3255 402 289 82 21 chrX 35109151 35109350 -141864790 - MLT1J LTR MaLR -236 198 3 1456 180 25 25 chrX 35109629 35109912 -141864228 + AluJo SINE Alu 23 305 -7 563 288 35 12 chrX 35110553 35110723 -141863417 + MIR SINE MIR 34 207 -55 334 260 0 0 chrX 35110755 35110832 -141863308 + Tigger3(Golem) DNA MER2_type 66 142 -2887 * 1547 144 0 19 chrX 35110829 35111092 -141863048 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 744 285 85 36 chrX 35113758 35114203 -141859937 + MLT1H LTR MaLR 81 547 -2 229 243 27 27 chrX 35114395 35114469 -141859671 - MER9 LTR ERVK -208 303 230 254 283 30 30 chrX 35114483 35114582 -141859558 + MLT-int LTR MaLR 464 562 -1173 227 337 22 22 chrX 35114894 35114986 -141859154 + MLT1H-int LTR MaLR 787 878 -493 560 257 72 108 chrX 35115206 35115568 -141858572 + MLT1H-int LTR MaLR 1023 1371 0 2220 237 85 33 chrX 35115614 35115867 -141858273 - L1MCc LINE L1 -4887 1536 1298 1898 177 28 11 chrX 35115867 35116223 -141857917 - MLT1A1 LTR MaLR 0 365 4 2220 237 85 33 chrX 35116223 35116841 -141857299 - L1MCc LINE L1 -5125 1298 808 1315 276 115 19 chrX 35116946 35117476 -141856664 - L1MCc LINE L1 -5824 599 19 709 224 64 81 chrX 35117515 35117854 -141856286 + MLT1H LTR MaLR 54 403 -192 1252 222 173 78 chrX 35117882 35118369 -141855771 + MLT1F LTR MaLR 10 542 0 282 214 94 51 chrX 35118393 35118510 -141855630 + MLT1H LTR MaLR 428 549 0 256 250 36 79 chrX 35118738 35118878 -141855262 - L1ME LINE L1 -284 5837 5704 579 204 56 31 chrX 35118900 35119062 -141855078 + MIR SINE MIR 9 174 -88 1747 207 65 43 chrX 35119073 35119518 -141854622 - MLT1C LTR MaLR -2 465 11 314 290 98 42 chrX 35119765 35119979 -141854161 - L2 LINE L2 -1216 2098 1873 2256 217 117 10 chrX 35120126 35120606 -141853534 + MLT2E LTR ERVL 83 613 -15 699 267 148 9 chrX 35120611 35120956 -141853184 - HAL1b LINE L1 -854 494 102 345 268 158 11 chrX 35121339 35121522 -141852618 - L1MC4 LINE L1 -143 7899 7690 8451 219 44 44 chrX 35121522 35123227 -141850913 - L1ME1 LINE L1 -4 6162 4459 2323 60 3 0 chrX 35123227 35123512 -141850628 + AluY SINE Alu 2 287 -24 8451 219 44 44 chrX 35123512 35124840 -141849300 - L1ME1 LINE L1 -1707 4459 3129 2451 99 0 0 chrX 35124840 35125152 -141848988 + AluSx SINE Alu 1 312 0 8451 219 44 44 chrX 35125152 35125697 -141848443 - L1ME1 LINE L1 -3037 3129 2586 1601 200 19 32 chrX 35125702 35126062 -141848078 - Tigger7 DNA MER2_type 0 2491 1 891 230 133 0 chrX 35126062 35126362 -141847778 - L1ME1 LINE L1 -3565 2581 2242 724 205 97 5 chrX 35126345 35126530 -141847610 - L1MD3 LINE L1 -12 7983 7782 * 2364 197 127 11 chrX 35126530 35127025 -141847115 - MER77 LTR ERV1 -4 601 22 3248 183 134 132 chrX 35127063 35127431 -141846709 - L1MD3 LINE L1 -220 7775 7409 625 198 33 0 chrX 35127431 35127552 -141846588 - MLT1F1 LTR MaLR -442 125 1 3248 183 134 132 chrX 35127552 35128234 -141845906 - L1MD3 LINE L1 -586 7409 6599 2314 97 0 0 chrX 35128234 35128526 -141845614 + AluSx SINE Alu 1 293 -14 210 105 0 0 chrX 35128526 35128564 -141845576 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 3248 183 134 132 chrX 35128569 35128675 -141845465 - L1MD3 LINE L1 -1396 6599 6495 4469 234 22 31 chrX 35128677 35129009 -141845131 - L1M4 LINE L1 -1287 4859 4525 3147 12 0 0 chrX 35129009 35129341 -141844799 - L1PA4 LINE L1 -11 6144 5813 4469 234 22 31 chrX 35129341 35129378 -141844762 - L1M4 LINE L1 -1621 4525 4489 1674 88 31 18 chrX 35129378 35129604 -141844536 + MER30 DNA MER1_type 1 229 -1 4469 234 22 31 chrX 35129604 35130519 -141843621 - L1M4 LINE L1 -1657 4489 3586 1026 141 6 12 chrX 35130526 35130689 -141843451 + L1MB5 LINE L1 5494 5655 -525 1348 137 9 9 chrX 35130691 35130903 -141843237 - MER47B DNA MER2_type 0 418 207 6421 160 27 14 chrX 35130903 35132017 -141842123 + LTR19B-int LTR ERV1 3466 4594 -421 6170 83 22 20 chrX 35132011 35132875 -141841265 + LTR19B-int LTR ERV1 4718 5583 -3 * 3441 111 83 63 chrX 35132878 35133447 -141840693 + LTR19B LTR ERV1 1 580 0 482 216 108 3 chrX 35133447 35133595 -141840545 - MER47B DNA MER2_type -207 211 1 2697 166 38 14 chrX 35133596 35134102 -141840038 + L1MB5 LINE L1 5657 6174 0 1434 187 164 24 chrX 35134102 35134351 -141839789 + L1MC4a LINE L1 4996 5209 -955 1707 164 18 0 chrX 35134351 35134632 -141839508 + AluJo SINE Alu 4 289 -23 1434 187 164 24 chrX 35134632 35135050 -141839090 + L1MC4a LINE L1 5209 5759 -405 6505 197 80 30 chrX 35135050 35135208 -141838932 + L1MC4a LINE L1 6053 6202 -1606 2244 104 17 0 chrX 35135208 35135506 -141838634 + AluSx SINE Alu 1 303 -9 6505 197 80 30 chrX 35135506 35135819 -141838321 + L1MC4a LINE L1 6202 6498 -1310 201 39 0 0 chrX 35135819 35135845 -141838295 + (GA)n Simple_repeat Simple_repeat 1 26 0 6505 197 80 30 chrX 35135845 35136224 -141837916 + L1MC4a LINE L1 6498 6857 -951 207 69 0 0 chrX 35136224 35136253 -141837887 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 6505 197 80 30 chrX 35136253 35136657 -141837483 + L1MC4a LINE L1 6857 7239 -569 2447 86 0 0 chrX 35136657 35136960 -141837180 + AluSq SINE Alu 1 303 -10 6505 197 80 30 chrX 35136960 35137345 -141836795 + L1MC4a LINE L1 7239 7806 -2 690 148 6 159 chrX 35137384 35137566 -141836574 - L1ME LINE L1 -526 5640 5487 1985 231 31 61 chrX 35137579 35138119 -141836021 + MLT1F1 LTR MaLR 1 549 -18 690 272 34 38 chrX 35138121 35138356 -141835784 + L1MC5 LINE L1 5426 5659 -2149 6714 135 28 5 chrX 35138371 35139493 -141834647 + L1MC1 LINE L1 5175 6333 0 455 211 234 28 chrX 35139489 35139707 -141834433 + L1MC5 LINE L1 5673 5935 -1873 * 273 214 36 0 chrX 35139708 35139792 -141834348 + (TA)n Simple_repeat Simple_repeat 1 87 0 3014 82 3 3 chrX 35141098 35141462 -141832678 + THE1B LTR MaLR 1 364 0 2099 209 110 71 chrX 35141751 35142378 -141831762 + L1MC5 LINE L1 6558 7242 -719 1725 154 7 40 chrX 35142378 35142566 -141831574 + AluJo SINE Alu 1 177 -135 2508 60 3 3 chrX 35142566 35142866 -141831274 + AluY SINE Alu 1 300 -11 1725 154 7 40 chrX 35142866 35142976 -141831164 + AluJo SINE Alu 177 289 -23 2099 209 110 71 chrX 35142976 35143300 -141830840 + L1MC5 LINE L1 7242 7552 -409 656 247 49 0 chrX 35143300 35143491 -141830649 + MLT1E LTR MaLR 1 212 -442 * 3218 98 60 29 chrX 35143488 35144037 -141830103 - Tigger3(Golem) DNA MER2_type -186 2843 2278 708 160 19 0 chrX 35144028 35144134 -141830006 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 10719 206 40 42 chrX 35144134 35145420 -141828720 + L1M2 LINE L1 2578 3866 -3699 1677 156 140 55 chrX 35145420 35145463 -141828677 + MSTD LTR MaLR 1 39 -357 1820 148 41 0 chrX 35145463 35145821 -141828319 + AluJb SINE Alu 1 369 0 1677 156 140 55 chrX 35145821 35146141 -141827999 + MSTD LTR MaLR 39 396 0 10719 206 40 42 chrX 35146141 35148415 -141825725 + L1M2 LINE L1 3866 6142 -1423 783 148 0 8 chrX 35148418 35148540 -141825600 - FLAM_A SINE Alu -2 140 20 3127 135 76 16 chrX 35148540 35149269 -141824871 + L1M2 LINE L1 6361 7156 -575 1114 284 16 70 chrX 35149345 35149834 -141824306 + MER110-int LTR ERV1 3310 3772 -875 2489 64 3 0 chrX 35149836 35150132 -141824008 + AluSq SINE Alu 1 297 -16 849 151 0 0 chrX 35150861 35150980 -141823160 + FLAM_C SINE Alu 1 119 -14 31 0 0 0 chrX 35150983 35151014 -141823126 + AT_rich Low_complexity Low_complexity 1 31 0 256 365 9 9 chrX 35152179 35152447 -141821693 - HERVL74 LTR ERVL -813 2743 2316 1150 253 100 38 chrX 35153944 35154423 -141819717 + MLT2B1 LTR ERVL 4 512 -8 1653 149 0 84 chrX 35156267 35156610 -141817530 + AluJo SINE Alu 1 317 0 1932 185 85 41 chrX 35156869 35157377 -141816763 - LTR55 LTR ERV -18 530 1 694 245 83 9 chrX 35157381 35157597 -141816543 - L1M4 LINE L1 -1158 4988 4757 * 1478 221 38 55 chrX 35157590 35158120 -141816020 - L1M4 LINE L1 -1644 4502 3982 4444 134 156 24 chrX 35158125 35159121 -141815019 - MER11B LTR ERVK -4 1232 1 393 0 0 0 chrX 35159143 35159190 -141814950 + L1PA3 LINE L1 6109 6155 0 316 280 23 38 chrX 35159205 35159337 -141814803 - HAL1 LINE L1 -2375 132 3 25 51 0 0 chrX 35159716 35159755 -141814385 + AT_rich Low_complexity Low_complexity 1 39 0 272 274 24 16 chrX 35160022 35160146 -141813994 - L1M4 LINE L1 -3667 2479 2355 1901 162 3 3 chrX 35160181 35160471 -141813669 - AluJb SINE Alu -22 290 1 701 174 0 87 chrX 35160567 35160716 -141813424 + MLT1A1 LTR MaLR 14 149 -225 2624 148 14 37 chrX 35160716 35160910 -141813230 + MSTB LTR MaLR 1 198 -228 1258 134 10 15 chrX 35160910 35161112 -141813028 + L1PB3 LINE L1 5954 6154 0 2624 148 14 37 chrX 35161112 35161351 -141812789 + MSTB LTR MaLR 198 424 -2 1324 80 0 21 chrX 35161351 35161539 -141812601 + MSTB-int LTR MaLR 1 184 -1467 1344 134 10 0 chrX 35161565 35161766 -141812374 + MSTB-int LTR MaLR 172 374 -1277 1484 171 63 22 chrX 35161844 35162207 -141811933 + SVA Other Other 436 813 -573 189 0 0 0 chrX 35162309 35162330 -141811810 + (A)n Simple_repeat Simple_repeat 1 21 0 745 89 0 0 chrX 35162402 35162492 -141811648 - AluSg/x SINE Alu -14 296 207 7208 168 45 17 chrX 35162494 35162622 -141811518 + MSTB-int LTR MaLR 361 484 -1167 2416 103 0 0 chrX 35162622 35162933 -141811207 + AluSx SINE Alu 1 311 -1 7208 168 45 17 chrX 35162933 35164059 -141810081 + MSTB-int LTR MaLR 484 1651 0 1977 188 115 3 chrX 35164059 35164442 -141809698 + MSTB LTR MaLR 1 426 0 997 204 50 18 chrX 35164447 35164667 -141809473 + MLT1A1 LTR MaLR 139 365 0 255 217 0 0 chrX 35164725 35164785 -141809355 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 277 279 29 0 chrX 35164892 35164996 -141809144 - L1M4 LINE L1 -3796 2350 2244 2429 103 138 5 chrX 35165969 35166347 -141807793 - MSTA LTR MaLR 0 428 1 1131 285 73 9 chrX 35166352 35166805 -141807335 - L1M4 LINE L1 -1780 4366 3885 277 244 183 5 chrX 35166867 35167064 -141807076 - L1M4 LINE L1 -2745 3401 3170 257 208 52 13 chrX 35167710 35167787 -141806353 - L1MC4 LINE L1 -1349 6693 6614 273 315 0 0 chrX 35167790 35167879 -141806261 - L1MC4 LINE L1 -1340 6702 6614 240 236 45 45 chrX 35167867 35167956 -141806184 + L1MC4 LINE L1 6614 6702 -1340 * 236 279 47 0 chrX 35167891 35167977 -141806163 - L1MC4 LINE L1 -1339 6703 6614 * 227 175 32 48 chrX 35167936 35167999 -141806141 + L1MC4 LINE L1 2006 2067 -4359 * 260 213 35 42 chrX 35168029 35168148 -141805992 + L1MC4 LINE L1 1995 6983 -1339 354 239 0 0 chrX 35168149 35168241 -141805899 + (TA)n Simple_repeat Simple_repeat 2 93 0 2079 135 30 0 chrX 35168288 35168584 -141805556 - AluSx SINE Alu -7 305 1 2448 127 70 5 chrX 35169102 35169504 -141804636 - MSTA LTR MaLR 0 428 1 750 284 117 35 chrX 35171319 35171805 -141802335 - L1MC4a LINE L1 -1714 6094 5569 2047 122 3 14 chrX 35174451 35174745 -141799395 - AluJo SINE Alu -21 291 1 717 155 136 0 chrX 35175250 35175405 -141798735 + MER104 DNA MER2_type 5 180 0 225 278 9 70 chrX 35175654 35175769 -141798371 + MER5B DNA MER1_type 1 108 -70 415 308 71 6 chrX 35175776 35175958 -141798182 + MIR SINE MIR 2 195 -67 198 143 0 0 chrX 35176000 35176035 -141798105 + (CTA)n Simple_repeat Simple_repeat 1 35 0 386 20 20 0 chrX 35176232 35176283 -141797857 + (TG)n Simple_repeat Simple_repeat 2 53 0 3583 120 21 7 chrX 35176403 35176971 -141797169 + L1MA6 LINE L1 5725 6300 0 268 254 160 28 chrX 35177004 35177185 -141796955 + L1MC4a LINE L1 5936 6140 -1668 1591 191 110 64 chrX 35177435 35177992 -141796148 + L1MC5 LINE L1 6558 7133 -828 2370 94 0 0 chrX 35177995 35178292 -141795848 + AluY SINE Alu 1 297 -14 3255 144 19 15 chrX 35178292 35178877 -141795263 + L1MB7 LINE L1 5598 6184 0 1779 283 81 8 chrX 35179978 35180976 -141793164 + L1ME3A LINE L1 4755 5831 -339 2321 198 218 10 chrX 35181010 35181785 -141792355 + L1ME1 LINE L1 5047 5966 -200 669 243 72 64 chrX 35181810 35182064 -141792076 + MER77 LTR ERV1 332 656 -22 6953 99 0 1 chrX 35182064 35182969 -141791171 + HERVL-A2 LTR ERVL 4751 5654 0 2108 160 52 35 chrX 35182969 35183508 -141790632 + MLT2A2 LTR ERVL 1 554 0 1833 223 137 10 chrX 35183799 35184310 -141789830 + L1MC4 LINE L1 6342 6917 -1125 2260 148 24 26 chrX 35184360 35184412 -141789728 + MSTB LTR MaLR 1 52 -374 2285 109 0 0 chrX 35184412 35184705 -141789435 + AluSx SINE Alu 1 293 -19 2260 148 24 26 chrX 35184705 35185030 -141789110 + MSTB LTR MaLR 52 377 -49 2529 191 93 35 chrX 35185040 35185523 -141788617 + L1MC4 LINE L1 6902 7438 -604 2179 132 3 0 chrX 35185523 35185826 -141788314 + AluSx SINE Alu 1 304 -8 2529 191 93 35 chrX 35185826 35186028 -141788112 + L1MC4 LINE L1 7438 7627 -415 391 212 0 0 chrX 35186039 35186124 -141788016 + L1MC4 LINE L1 7746 7830 -212 977 182 132 41 chrX 35186124 35186344 -141787796 + MER76 LTR ERV 1 240 -448 395 261 8 23 chrX 35186870 35187000 -141787140 + L1MC4 LINE L1 7891 8018 -24 * 500 279 119 56 chrX 35186998 35187392 -141786748 + L1ME LINE L1 5364 5782 -339 1925 168 33 55 chrX 35187410 35187809 -141786331 + MLT1B LTR MaLR 1 390 0 2278 238 29 37 chrX 35187970 35188596 -141785544 + L1MDb LINE L1 141 761 -5782 4967 163 44 4 chrX 35188598 35189420 -141784720 - MER54A LTR ERVL 0 901 47 2001 219 86 34 chrX 35189394 35189951 -141784189 + MER21B LTR ERV1 142 727 -136 * 3097 181 79 59 chrX 35189972 35190855 -141783285 + L1MDb LINE L1 1169 2069 -4471 2243 115 0 0 chrX 35191021 35191317 -141782823 - AluSx SINE Alu -16 296 1 2409 77 0 10 chrX 35191428 35191727 -141782413 + AluSc SINE Alu 1 296 -13 3988 218 54 45 chrX 35191727 35192995 -141781145 + L1MD1 LINE L1 1302 2557 -3983 1650 169 48 65 chrX 35192995 35193392 -141780748 + MLT1B LTR MaLR 1 390 0 3988 218 54 45 chrX 35193392 35193423 -141780717 + L1MD1 LINE L1 2557 2586 -3954 2002 128 31 0 chrX 35193423 35193711 -141780429 + AluJb SINE Alu 1 297 -15 3988 218 54 45 chrX 35193711 35193889 -141780251 + L1MD1 LINE L1 2586 2761 -3779 2168 116 3 0 chrX 35193889 35194181 -141779959 + AluSx SINE Alu 1 293 -19 3988 218 54 45 chrX 35194181 35194447 -141779693 + L1MD1 LINE L1 2761 3079 -3461 1363 101 0 21 chrX 35194447 35194635 -141779505 - AluSg/x SINE Alu 0 312 129 1239 225 35 19 chrX 35194636 35194952 -141779188 + L1MD1 LINE L1 3073 3393 -3147 2318 93 13 7 chrX 35194953 35195254 -141778886 + AluSx SINE Alu 1 303 -9 3843 145 25 22 chrX 35195256 35195475 -141778665 + L1MA5 LINE L1 5613 5830 -470 2056 111 59 0 chrX 35195475 35195763 -141778377 + AluSx SINE Alu 1 305 -7 3843 145 25 22 chrX 35195763 35196227 -141777913 + L1MA5 LINE L1 5830 6298 -2 2354 96 0 0 chrX 35196230 35196521 -141777619 + AluSx SINE Alu 1 291 -21 21 0 0 0 chrX 35196528 35196549 -141777591 + AT_rich Low_complexity Low_complexity 1 21 0 4551 185 60 18 chrX 35196560 35196656 -141777484 + L1MD1 LINE L1 5295 5385 -1251 2406 85 0 0 chrX 35196656 35196950 -141777190 + AluSx SINE Alu 1 294 -18 4551 185 60 18 chrX 35196950 35198138 -141776002 + L1MD1 LINE L1 5385 6627 -9 585 252 119 31 chrX 35198122 35198324 -141775816 + L1ME1 LINE L1 5884 6106 -108 * 2252 100 7 3 chrX 35201163 35201464 -141772676 + AluSx SINE Alu 1 302 -10 632 224 133 20 chrX 35202103 35202299 -141771841 + MLT1J LTR MaLR 286 503 -8 256 91 0 0 chrX 35203337 35203370 -141770770 - Alu SINE Alu -46 256 224 618 72 0 24 chrX 35203923 35204006 -141770134 + MSTD LTR MaLR 1 81 -315 255 65 0 0 chrX 35204006 35204037 -141770103 + MSTD LTR MaLR 45 75 -321 522 320 11 0 chrX 35204480 35204655 -141769485 + (CCA)n Simple_repeat Simple_repeat 3 179 0 936 202 14 16 chrX 35206215 35206451 -141767689 + MIR SINE MIR 5 232 -30 2344 79 0 17 chrX 35206532 35206824 -141767316 + AluSg SINE Alu 5 291 -19 2368 83 37 0 chrX 35207436 35207775 -141766365 - AluSx SINE Alu 0 350 1 216 0 0 0 chrX 35208276 35208300 -141765840 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1943 143 3 37 chrX 35208392 35208713 -141765427 + AluSx SINE Alu 1 310 -2 2658 45 0 3 chrX 35209007 35209317 -141764823 + AluY SINE Alu 1 309 -2 225 0 0 0 chrX 35209389 35209414 -141764726 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 2041 148 3 0 chrX 35209416 35209720 -141764420 - AluSx SINE Alu -7 305 1 23 68 0 0 chrX 35210262 35210306 -141763834 + AT_rich Low_complexity Low_complexity 1 44 0 815 190 23 30 chrX 35210353 35210624 -141763516 + L1ME3A LINE L1 5222 5489 -675 2359 94 7 0 chrX 35210653 35210960 -141763180 - AluSq SINE Alu -4 309 1 2245 199 54 92 chrX 35211030 35211728 -141762412 + L1ME3A LINE L1 5493 6164 -6 2414 97 3 0 chrX 35211790 35212101 -141762039 + AluSx SINE Alu 1 312 0 2260 110 3 10 chrX 35212110 35212418 -141761722 + AluSq SINE Alu 1 306 -7 399 294 101 20 chrX 35212425 35212584 -141761556 + L1MC/D LINE L1 5296 5441 -680 814 43 0 17 chrX 35212584 35212701 -141761439 + (TCTCCC)n Simple_repeat Simple_repeat 1 115 0 6398 74 13 15 chrX 35212701 35214234 -141759906 + SVA Other Other 52 1386 0 399 294 101 20 chrX 35214234 35214391 -141759749 + L1MC/D LINE L1 5440 5645 -476 4271 94 9 105 chrX 35214427 35214774 -141759366 + L1PA13 LINE L1 5484 5722 -441 832 150 0 0 chrX 35214774 35214894 -141759246 + FLAM_C SINE Alu 1 120 -13 4271 94 9 105 chrX 35214894 35215298 -141758842 + L1PA13 LINE L1 5722 6163 0 231 274 111 8 chrX 35215329 35215446 -141758694 + L1MC/D LINE L1 5731 5859 -1949 621 305 10 0 chrX 35215473 35215676 -141758464 + MIR SINE MIR 58 262 0 195 242 0 0 chrX 35215685 35215747 -141758393 + (TTA)n Simple_repeat Simple_repeat 2 63 0 532 185 34 112 chrX 35216709 35216887 -141757253 - MIR SINE MIR 0 262 99 1560 135 12 11 chrX 35217152 35217424 -141756716 - L1MA5 LINE L1 -1 6290 6025 1538 179 13 99 chrX 35218537 35218911 -141755229 + MLT1A2 LTR MaLR 24 365 -9 348 187 0 110 chrX 35218925 35219016 -141755124 - MER92B LTR ERV1 -535 101 21 5292 165 36 40 chrX 35219224 35220920 -141753220 - L1MB5 LINE L1 0 6174 4486 2294 94 7 10 chrX 35220920 35221218 -141752922 - AluSx SINE Alu -15 297 1 5292 165 36 40 chrX 35221218 35221627 -141752513 - L1MB5 LINE L1 -1688 4486 4077 1974 196 48 53 chrX 35221699 35222245 -141751895 + LTR55 LTR ERV 1 543 -5 2439 35 0 11 chrX 35223477 35223759 -141750381 + AluY SINE Alu 1 279 -32 195 42 0 0 chrX 35223759 35223783 -141750357 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 966 260 84 54 chrX 35224473 35224973 -141749167 - MLT2B1 LTR ERVL -2 518 4 282 258 58 39 chrX 35225777 35225932 -141748208 + HERVL74 LTR ERVL 1805 1962 -3723 2382 78 10 3 chrX 35226230 35226536 -141747604 + AluSq SINE Alu 1 308 -5 295 311 44 40 chrX 35226752 35227004 -141747136 + HERVL74 LTR ERVL 2316 2695 -861 677 156 0 106 chrX 35228193 35228215 -141745925 - FLAM_C SINE Alu -172 130 107 2223 114 0 0 chrX 35228215 35228512 -141745628 + AluSx SINE Alu 1 297 -15 677 156 0 106 chrX 35228512 35228630 -141745510 - FLAM_C SINE Alu -195 107 5 1735 128 54 27 chrX 35230259 35230555 -141743585 + AluJo SINE Alu 1 304 -8 2080 122 14 0 chrX 35230685 35230973 -141743167 + AluSx SINE Alu 1 292 -20 265 289 0 0 chrX 35232144 35232220 -141741920 + MER66-int LTR ERV1 6115 6190 -486 1181 198 39 144 chrX 35232227 35232686 -141741454 - MER92A LTR ERV1 0 412 2 1763 127 74 18 chrX 35232978 35233116 -141741024 + AluJb SINE Alu 1 130 -182 2085 127 0 3 chrX 35233116 35233436 -141740704 + AluSx SINE Alu 1 319 0 1763 127 74 18 chrX 35233436 35233579 -141740561 + AluJb SINE Alu 130 299 -13 3512 59 5 0 chrX 35234311 35234752 -141739388 + L1PA8 LINE L1 5725 6167 -5 415 304 71 63 chrX 35235158 35235411 -141738729 - MER89-int LTR ERV1 -1447 5354 5105 7725 24 1 0 chrX 35235411 35236810 -141737330 - L1PA3 LINE L1 -5 6150 4746 415 304 71 63 chrX 35236810 35237176 -141736964 - MER89-int LTR ERV1 -1696 5105 2452 1620 140 117 15 chrX 35237230 35237495 -141736645 - AluJo SINE Alu -16 296 5 1161 225 64 50 chrX 35237714 35237908 -141736232 - MER89-int LTR ERV1 -1963 2973 2783 2247 106 0 7 chrX 35237908 35238211 -141735929 + AluSx SINE Alu 1 301 -11 1161 225 64 50 chrX 35238211 35238438 -141735702 - MER89-int LTR ERV1 -2153 2783 2546 3669 200 34 5 chrX 35238445 35239116 -141735024 - MER21B LTR ERV1 -130 733 43 413 230 0 0 chrX 35239116 35239190 -141734950 - MER21B LTR ERV1 -771 92 19 654 154 146 0 chrX 35239271 35239381 -141734759 + FLAM_C SINE Alu 3 128 -5 186 184 0 0 chrX 35239458 35239496 -141734644 + MIR SINE MIR 109 146 -62 944 202 76 42 chrX 35239676 35239914 -141734226 + L1ME2 LINE L1 5909 6154 -10 664 199 77 33 chrX 35240159 35240340 -141733800 - MER89-int LTR ERV1 -2745 2191 2003 5697 132 24 57 chrX 35240433 35240565 -141733575 - MER89-int LTR ERV1 -3492 1444 1309 2238 100 7 0 chrX 35240565 35240856 -141733284 - AluSq SINE Alu -19 294 2 5697 132 24 57 chrX 35240856 35241283 -141732857 - MER89-int LTR ERV1 -3627 1309 934 2584 47 0 28 chrX 35241283 35241602 -141732538 - AluY SINE Alu 0 311 2 5697 132 24 57 chrX 35241602 35242088 -141732052 - MER89-int LTR ERV1 -4002 934 433 768 133 11 155 chrX 35242703 35242942 -141731198 - MER92B LTR ERV1 -2 634 228 243 229 0 0 chrX 35242968 35243016 -141731124 - MER92A LTR ERV1 -363 49 2 658 113 99 119 chrX 35243316 35243467 -141730673 - FRAM SINE Alu -18 148 1 265 111 0 0 chrX 35243485 35243521 -141730619 + LTR55 LTR ERV 4 39 -509 285 79 0 0 chrX 35243559 35243597 -141730543 - LTR14 LTR ERVK -508 40 3 1965 186 59 40 chrX 35243603 35243698 -141730442 + LTR55 LTR ERV 32 124 -424 2277 103 3 0 chrX 35243698 35243998 -141730142 - AluSc SINE Alu -8 301 1 1965 186 59 40 chrX 35243998 35244407 -141729733 + LTR55 LTR ERV 124 546 -2 2478 176 2 61 chrX 35244409 35244936 -141729204 + MER77-int LTR ERV1 3641 4136 -55 2186 102 3 7 chrX 35244991 35245284 -141728856 + AluSx SINE Alu 1 292 -20 534 96 0 36 chrX 35245512 35245595 -141728545 - MADE1 DNA Mariner 0 80 1 835 218 0 6 chrX 35246747 35246912 -141727228 + AluSg/x SINE Alu 131 294 -18 3298 184 10 42 chrX 35247137 35247762 -141726378 + MER77 LTR ERV1 1 605 0 1722 105 0 4 chrX 35247887 35248115 -141726025 + AluSg/x SINE Alu 74 300 -10 2044 116 68 3 chrX 35248262 35248554 -141725586 + AluSx SINE Alu 1 311 -1 301 253 23 11 chrX 35249453 35249540 -141724600 + LTR2 LTR ERV1 41 128 -321 899 191 27 21 chrX 35249563 35249751 -141724389 + LTR2 LTR ERV1 261 449 0 2621 91 39 0 chrX 35249926 35250287 -141723853 - THE1C LTR MaLR 0 375 1 241 154 19 19 chrX 35250370 35250422 -141723718 - THE1B LTR MaLR -51 313 262 806 175 0 7 chrX 35250435 35250572 -141723568 + MLT1B LTR MaLR 255 390 0 1907 160 28 0 chrX 35250599 35250886 -141723254 - AluJb SINE Alu -17 295 1 397 276 134 46 chrX 35250898 35251137 -141723003 - L1MEd LINE L1 -5306 813 554 448 233 108 0 chrX 35251206 35251335 -141722805 + L2 LINE L2 2920 3062 -251 204 279 27 99 chrX 35251482 35251532 -141722608 + L2 LINE L2 3210 3249 -64 2342 93 0 3 chrX 35251532 35251842 -141722298 + AluSc SINE Alu 1 309 0 204 279 27 99 chrX 35251842 35251902 -141722238 + L2 LINE L2 3249 3312 -1 2314 73 0 11 chrX 35251914 35252230 -141721910 + AluY SINE Alu 1 313 0 2052 174 15 8 chrX 35252363 35252723 -141721417 - MLT1A1 LTR MaLR 0 365 2 352 289 75 66 chrX 35252787 35252897 -141721243 + L1MC4a LINE L1 290 398 -5721 1114 228 161 20 chrX 35252897 35253244 -141720896 + MSTD LTR MaLR 1 396 0 352 289 75 66 chrX 35253244 35253361 -141720779 + L1MC4a LINE L1 398 519 -5600 323 291 85 16 chrX 35253673 35253862 -141720278 + L1MC4a LINE L1 2964 3165 -2964 201 257 0 14 chrX 35254085 35254140 -141720000 + (TA)n Simple_repeat Simple_repeat 1 56 -17 2263 112 0 0 chrX 35254140 35254434 -141719706 + AluSx SINE Alu 1 294 -18 201 257 0 14 chrX 35254434 35254452 -141719688 + (TA)n Simple_repeat Simple_repeat 56 73 0 387 0 0 0 chrX 35256601 35256644 -141717496 + (CA)n Simple_repeat Simple_repeat 2 44 0 312 244 0 23 chrX 35256984 35257070 -141717070 + L1 LINE L1 4951 5034 -1112 1073 247 80 77 chrX 35257437 35257930 -141716210 + L1MC4a LINE L1 4778 4865 -1264 2115 111 77 17 chrX 35257930 35258283 -141715857 + THE1C LTR MaLR 1 374 -1 1073 247 80 77 chrX 35258283 35258807 -141715333 + L1MC4a LINE L1 4865 5386 -743 2170 119 0 0 chrX 35258808 35259103 -141715037 + AluSx SINE Alu 1 295 -17 1310 153 38 5 chrX 35259105 35259314 -141714826 + AluJb SINE Alu 84 299 -13 345 162 0 0 chrX 35259316 35259384 -141714756 + GA-rich Low_complexity Low_complexity 3 70 0 247 250 0 15 chrX 35259385 35259453 -141714687 + L1MC/D LINE L1 5819 5885 -1923 534 235 0 22 chrX 35259453 35259589 -141714551 - L2 LINE L2 -1 3312 3180 324 289 75 21 chrX 35259695 35259884 -141714256 + L1ME LINE L1 5322 5516 -650 2331 90 0 0 chrX 35259964 35260253 -141713887 + AluSx SINE Alu 1 289 -23 709 204 158 36 chrX 35260402 35260598 -141713542 + MIR SINE MIR 43 262 0 1731 153 14 89 chrX 35260755 35260832 -141713308 + MER58B DNA MER1_type 10 91 -2329 1809 150 7 4 chrX 35260832 35261106 -141713034 - AluJb SINE Alu -21 291 17 1731 153 14 89 chrX 35261106 35261387 -141712753 + MER58B DNA MER1_type 91 341 0 743 246 0 0 chrX 35261387 35261578 -141712562 + L1ME LINE L1 3383 3573 -2573 1119 78 0 0 chrX 35261578 35261720 -141712420 + AluSq/x SINE Alu 1 142 -171 452 158 0 13 chrX 35261720 35261819 -141712321 + AluJb SINE Alu 210 307 0 393 153 0 0 chrX 35261819 35261891 -141712249 + GA-rich Low_complexity Low_complexity 3 74 0 1171 92 0 0 chrX 35261911 35262064 -141712076 + AluSq SINE Alu 145 297 -16 532 255 65 0 chrX 35262064 35262248 -141711892 + L1ME LINE L1 3559 3754 -2392 277 241 74 46 chrX 35262281 35262389 -141711751 + L1MC5 LINE L1 7791 7901 -60 391 326 0 0 chrX 35263393 35263528 -141710612 + L1ME LINE L1 5617 5751 -370 477 204 79 86 chrX 35263580 35263859 -141710281 + L1MC5 LINE L1 7503 7779 -182 1084 167 191 8 chrX 35263897 35264143 -141709997 + AluJo SINE Alu 1 291 -11 1595 148 11 4 chrX 35264145 35264415 -141709725 + AluSq SINE Alu 1 272 -41 852 156 16 4 chrX 35264418 35264670 -141709470 + GA-rich Low_complexity Low_complexity 1 255 0 476 189 7 95 chrX 35264674 35264708 -141709432 + L1MC5 LINE L1 7779 7814 -147 1301 191 38 55 chrX 35264708 35265054 -141709086 - MER58B DNA MER1_type -1 340 1 476 189 7 95 chrX 35265054 35265167 -141708973 + L1MC5 LINE L1 7814 7913 -48 1933 148 6 3 chrX 35265315 35265626 -141708514 + AluJb SINE Alu 1 312 0 1380 162 49 16 chrX 35265650 35265710 -141708430 + MER106B DNA MER1_type 1 58 -1001 233 29 0 29 chrX 35265710 35265745 -141708395 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1380 162 49 16 chrX 35265745 35265931 -141708209 + MER106B DNA MER1_type 58 255 -804 500 250 59 7 chrX 35265934 35266070 -141708070 - MIR SINE MIR -60 202 60 2492 48 0 3 chrX 35266206 35266518 -141707622 - AluY SINE Alu 0 311 1 487 238 56 53 chrX 35266558 35266689 -141707451 + L1ME LINE L1 5150 5279 -883 2184 99 0 7 chrX 35266689 35266993 -141707147 + AluSx SINE Alu 1 302 -10 487 238 56 53 chrX 35266993 35267144 -141706996 + L1ME LINE L1 5279 5435 -727 1884 155 3 0 chrX 35268889 35269193 -141704947 + AluSx SINE Alu 1 305 -7 876 133 0 0 chrX 35269204 35269332 -141704808 + FLAM_C SINE Alu 1 128 -5 1245 176 31 0 chrX 35269482 35269704 -141704436 + AluSx SINE Alu 2 230 -82 1237 198 84 65 chrX 35270118 35270441 -141703699 - MLT1D LTR MaLR 0 505 177 276 53 0 0 chrX 35270449 35270487 -141703653 + (GA)n Simple_repeat Simple_repeat 1 38 0 1382 165 12 8 chrX 35270488 35270633 -141703507 - AluJo SINE Alu -31 281 133 2373 78 0 0 chrX 35270633 35270939 -141703201 - AluY SINE Alu -5 306 1 1382 165 12 8 chrX 35270939 35271041 -141703099 - AluJo SINE Alu -179 133 33 258 80 60 80 chrX 35271042 35271092 -141703048 - MLT1D LTR MaLR -316 189 141 1058 134 58 6 chrX 35271092 35271263 -141702877 - MLT1D LTR MaLR -325 180 1 2125 100 0 0 chrX 35271634 35271944 -141702196 + AluSc SINE Alu 1 310 0 1856 146 11 0 chrX 35271979 35272266 -141701874 + AluJo SINE Alu 1 290 -22 2075 124 13 0 chrX 35272561 35272867 -141701273 + AluSx SINE Alu 3 312 0 1538 202 65 14 chrX 35273086 35273442 -141700698 + MLT1A2 LTR MaLR 1 374 0 816 173 0 0 chrX 35273607 35273740 -141700400 + AluJo SINE Alu 2 134 -178 24 0 0 0 chrX 35273740 35273764 -141700376 + AT_rich Low_complexity Low_complexity 1 24 0 327 297 0 0 chrX 35273802 35273876 -141700264 - MER5A DNA MER1_type -53 136 63 1704 166 63 120 chrX 35273886 35274095 -141700045 - L1MC4 LINE L1 -2 8040 7821 8596 67 4 3 chrX 35274095 35275165 -141698975 + MER11C LTR ERVK 1 1071 0 1735 177 0 3 chrX 35275171 35275481 -141698659 + AluJb SINE Alu 1 309 -3 1704 166 63 120 chrX 35275481 35275619 -141698521 - L1MC4 LINE L1 -226 7816 7672 2042 126 0 7 chrX 35275619 35275921 -141698219 + AluSq SINE Alu 1 300 -13 1704 166 63 120 chrX 35275921 35276148 -141697992 - L1MC4 LINE L1 -370 7672 7491 1083 183 26 17 chrX 35276119 35276349 -141697791 - L1MC4a LINE L1 -1217 6591 6360 * 822 151 0 22 chrX 35276349 35276488 -141697652 + FLAM_C SINE Alu 2 137 -6 1172 170 52 116 chrX 35276488 35276893 -141697247 - L1MC4a LINE L1 -1437 6371 5993 298 0 23 23 chrX 35277304 35277347 -141696793 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1204 79 17 0 chrX 35277349 35277526 -141696614 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2030 98 7 4 chrX 35277531 35277808 -141696332 - AluSx SINE Alu -34 278 1 688 203 98 0 chrX 35277911 35278074 -141696066 + LTR47A LTR ERVL 274 452 0 549 211 0 0 chrX 35278113 35278217 -141695923 + U13 snRNA snRNA 1 104 0 273 302 9 0 chrX 35278265 35278371 -141695769 + HERVL32 LTR ERVL 81 187 -3231 1508 346 61 61 chrX 35280003 35281167 -141692973 + HERVL32 LTR ERVL 1721 2884 -2459 2378 218 79 72 chrX 35281167 35281987 -141692153 - LTR1B LTR ERV1 0 826 1 1508 346 61 61 chrX 35281987 35282882 -141691258 + HERVL32 LTR ERVL 2884 3677 -1666 1804 124 96 37 chrX 35282882 35283236 -141690904 + THE1C LTR MaLR 1 375 0 1508 346 61 61 chrX 35283236 35283643 -141690497 + HERVL32 LTR ERVL 3677 4083 -1260 2028 119 0 30 chrX 35283660 35283963 -141690177 + AluSx SINE Alu 1 294 -18 2688 136 34 0 chrX 35283983 35284396 -141689744 - MSTA LTR MaLR -1 427 1 2006 85 30 20 chrX 35284781 35285076 -141689064 + L1PA15 LINE L1 5865 6162 -3 324 302 0 87 chrX 35285775 35285835 -141688305 + PABL_B-int LTR ERV1 5633 5697 -1425 2361 93 0 0 chrX 35285835 35286147 -141687993 + AluSx SINE Alu 1 312 0 324 302 0 87 chrX 35286147 35286235 -141687905 + PABL_B-int LTR ERV1 5697 5768 -1354 612 164 0 57 chrX 35286435 35286557 -141687583 + PABL_B-int LTR ERV1 5968 6082 -676 903 153 90 6 chrX 35286802 35286979 -141687161 + LTR47A LTR ERVL 261 452 0 1011 76 6 13 chrX 35287059 35287216 -141686924 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 1764 151 4 0 chrX 35287221 35287500 -141686640 - AluSq SINE Alu -33 280 1 1893 118 29 38 chrX 35288094 35288409 -141685731 + AluSx SINE Alu 1 312 0 237 108 0 0 chrX 35288409 35288446 -141685694 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 798 243 6 0 chrX 35289679 35289848 -141684292 - LTR65 LTR ERV1 -12 657 488 1286 163 19 0 chrX 35289935 35290150 -141683990 - MER20 DNA MER1_type 0 219 1 1762 129 0 52 chrX 35290309 35290645 -141683495 + AluSx SINE Alu 1 320 0 1886 146 3 0 chrX 35290650 35290944 -141683196 + AluSx SINE Alu 1 295 -17 1536 194 20 12 chrX 35290947 35291292 -141682848 + L1MD3 LINE L1 4382 4729 -1417 237 108 0 0 chrX 35291976 35292013 -141682127 + (TTCC)n Simple_repeat Simple_repeat 1 37 0 1893 118 29 38 chrX 35292013 35292328 -141681812 - AluSx SINE Alu 0 312 1 1833 209 64 38 chrX 35292932 35293128 -141681012 + L1MD3 LINE L1 5130 5319 -1015 2151 92 7 0 chrX 35293128 35293423 -141680717 + AluSp SINE Alu 1 297 -16 1833 209 64 38 chrX 35293423 35293574 -141680566 + L1MD3 LINE L1 5319 5465 -869 1580 151 72 4 chrX 35293574 35293852 -141680288 + AluJb SINE Alu 1 297 -15 1833 209 64 38 chrX 35293852 35294262 -141679878 + L1MD3 LINE L1 5465 5863 -471 1891 124 13 0 chrX 35294262 35294560 -141679580 - AluSx SINE Alu -10 302 1 1833 209 64 38 chrX 35294560 35294782 -141679358 + L1MD3 LINE L1 5863 6334 0 815 129 23 0 chrX 35294856 35294988 -141679152 + AluJo SINE Alu 1 135 -177 2051 97 0 83 chrX 35295044 35295383 -141678757 - AluSx SINE Alu 0 312 2 2104 122 0 0 chrX 35295528 35295824 -141678316 - AluSx SINE Alu -16 296 1 896 151 0 0 chrX 35295949 35296088 -141678052 - FLAM_C SINE Alu -4 139 1 940 119 0 15 chrX 35296222 35296356 -141677784 - FLAM_C SINE Alu -1 132 1 271 318 106 37 chrX 35296650 35296867 -141677273 + MIR SINE MIR 15 246 -16 610 275 113 18 chrX 35296891 35297113 -141677027 - MIR SINE MIR 0 262 20 2785 91 3 3 chrX 35297115 35297479 -141676661 - THE1B LTR MaLR 0 364 1 670 221 45 50 chrX 35297592 35297750 -141676390 + MLT1D LTR MaLR 1 157 -348 2462 181 36 61 chrX 35297750 35298304 -141675836 - MLT2B3 LTR ERVL 0 554 15 993 174 45 147 chrX 35298342 35298473 -141675667 + MLT1D LTR MaLR 149 292 -213 2546 122 57 10 chrX 35298473 35298876 -141675264 + MSTB LTR MaLR 1 422 -4 993 174 45 147 chrX 35298876 35298959 -141675181 + MLT1D LTR MaLR 292 382 -123 1847 155 0 7 chrX 35298959 35299263 -141674877 + AluJb SINE Alu 11 312 0 993 174 45 147 chrX 35299263 35299443 -141674697 + MLT1D LTR MaLR 382 504 -1 2331 232 84 105 chrX 35299445 35299749 -141674391 + MLT1D-int LTR MaLR 2 311 -1060 2129 82 0 7 chrX 35299749 35300031 -141674109 + AluSp SINE Alu 1 280 -33 2331 232 84 105 chrX 35300031 35301126 -141673014 + MLT1D-int LTR MaLR 311 1371 0 780 218 32 50 chrX 35301126 35301221 -141672919 + MLT1D LTR MaLR 1 96 -409 1892 96 92 0 chrX 35301221 35301493 -141672647 + AluSg1 SINE Alu 1 297 -12 780 218 32 50 chrX 35301493 35301617 -141672523 + MLT1D LTR MaLR 96 216 -289 1291 217 66 30 chrX 35301629 35301980 -141672160 + MSTD LTR MaLR 1 396 0 1223 193 16 11 chrX 35301986 35302016 -141672124 + MLT1D LTR MaLR 224 252 -253 1663 123 138 35 chrX 35302016 35302356 -141671784 - THE1C LTR MaLR 0 375 1 1223 193 16 11 chrX 35302356 35302576 -141671564 + MLT1D LTR MaLR 252 499 -6 689 163 0 47 chrX 35302699 35302828 -141671312 + FLAM_C SINE Alu 2 124 -19 26 0 0 0 chrX 35302828 35302854 -141671286 + AT_rich Low_complexity Low_complexity 1 26 0 733 301 10 5 chrX 35302860 35303053 -141671087 + MIR SINE MIR 19 212 -50 638 168 0 77 chrX 35303383 35303526 -141670614 - FLAM_C SINE Alu 0 133 2 1216 148 32 115 chrX 35303535 35303874 -141670266 - AluJo SINE Alu -1 311 1 344 158 384 62 chrX 35304544 35304690 -141669450 - AluJo SINE Alu -105 197 5 874 173 211 42 chrX 35304699 35304959 -141669181 - AluJo SINE Alu -4 308 5 893 172 195 38 chrX 35304963 35305107 -141669033 - AluJb SINE Alu 0 312 192 293 0 27 0 chrX 35305107 35305144 -141668996 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 893 172 195 38 chrX 35305144 35305266 -141668874 - AluJb SINE Alu -120 192 4 559 146 107 0 chrX 35305295 35305398 -141668742 - FLAM_A SINE Alu -16 117 4 212 0 36 0 chrX 35305405 35305433 -141668707 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1059 139 0 88 chrX 35305470 35305708 -141668432 - AluJo SINE Alu -95 217 1 1654 156 3 10 chrX 35307290 35307579 -141666561 - AluJo SINE Alu -25 287 1 208 0 0 59 chrX 35308065 35308099 -141666041 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1993 105 4 0 chrX 35308103 35308380 -141665760 - AluSq SINE Alu -35 278 1 304 115 96 0 chrX 35309182 35309234 -141664906 - L1MB7 LINE L1 -28 6156 6100 334 258 0 11 chrX 35309800 35309889 -141664251 - MIR SINE MIR -34 228 141 261 338 0 0 chrX 35309930 35310001 -141664139 + MIR SINE MIR 79 149 -113 188 286 79 0 chrX 35310050 35310113 -141664027 - MIR SINE MIR -128 134 67 2091 102 0 0 chrX 35310646 35310940 -141663200 + AluSc SINE Alu 1 294 -15 6647 54 9 60 chrX 35310986 35312725 -141661415 + SVA Other Other 13 1386 0 194 255 0 20 chrX 35313254 35313305 -141660835 + MIR SINE MIR 163 212 -50 309 292 71 18 chrX 35313695 35313808 -141660332 + MIR SINE MIR 79 197 -65 2947 114 59 13 chrX 35313910 35314365 -141659775 - Tigger1 DNA MER2_type 0 2418 1943 * 5412 102 21 93 chrX 35314358 35315182 -141658958 - Tigger1 DNA MER2_type -1377 1041 209 1492 84 14 5 chrX 35315182 35315395 -141658745 + L1MA2 LINE L1 6089 6303 -1 5412 102 21 93 chrX 35315395 35315590 -141658550 - Tigger1 DNA MER2_type -2209 209 1 218 32 32 0 chrX 35316863 35316894 -141657246 + (CA)n Simple_repeat Simple_repeat 2 33 0 417 227 6 3 chrX 35317066 35317164 -141656976 - L1ME LINE L1 -424 5697 5598 297 255 112 10 chrX 35317171 35317269 -141656871 - L2 LINE L2 -22 3291 3184 324 0 0 0 chrX 35317285 35317321 -141656819 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 904 154 20 7 chrX 35317322 35317471 -141656669 - FRAM SINE Alu -15 151 1 300 303 53 38 chrX 35318070 35318202 -141655938 - MIR SINE MIR -97 165 32 2130 99 0 0 chrX 35319002 35319296 -141654844 - AluSg SINE Alu -14 296 3 1230 224 0 0 chrX 35319316 35319570 -141654570 - AluJo SINE Alu -23 289 36 1835 153 0 0 chrX 35319570 35319858 -141654282 + AluSx SINE Alu 2 289 -23 225 94 0 0 chrX 35319863 35319895 -141654245 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 540 297 126 21 chrX 35319963 35320249 -141653891 + MER65-int LTR ERV1 4555 4870 -1 1938 109 3 7 chrX 35320283 35320576 -141653564 + AluSx SINE Alu 1 292 -20 356 292 23 15 chrX 35320807 35320937 -141653203 - L1 LINE L1 -1721 4425 4295 1717 154 13 19 chrX 35321007 35321319 -141652821 + AluSx SINE Alu 1 310 -2 2029 139 0 0 chrX 35321886 35322196 -141651944 + AluSg SINE Alu 1 310 0 1004 216 72 5 chrX 35322299 35322521 -141651619 - MER67C LTR ERV1 -282 428 192 548 167 0 56 chrX 35322523 35322631 -141651509 + AluJb SINE Alu 3 104 -208 338 218 194 24 chrX 35322641 35322765 -141651375 - MER67C LTR ERV1 -565 145 1 1792 154 3 3 chrX 35322921 35323214 -141650926 - AluSq SINE Alu -20 293 1 1078 158 15 10 chrX 35323296 35323498 -141650642 - MER65C LTR ERV1 0 461 259 296 42 0 42 chrX 35324084 35324132 -141650008 + L1PA3 LINE L1 6107 6152 -3 25 0 0 0 chrX 35324133 35324158 -141649982 + AT_rich Low_complexity Low_complexity 1 25 0 689 38 0 0 chrX 35324747 35324827 -141649313 - U6 snRNA snRNA -27 80 1 1986 120 0 0 chrX 35324922 35325239 -141648901 + AluSq SINE Alu 2 318 0 451 161 12 12 chrX 35325595 35325676 -141648464 - L1M4 LINE L1 -6308 234 154 730 120 25 13 chrX 35325677 35325835 -141648305 + CT-rich Low_complexity Low_complexity 3 162 0 611 197 17 0 chrX 35325838 35325955 -141648185 - AluSg/x SINE Alu 0 309 191 264 119 0 0 chrX 35325958 35326000 -141648140 + AluJo/FLAM SINE Alu 66 107 -195 842 184 112 15 chrX 35326000 35326196 -141647944 + AluJb SINE Alu 6 220 -92 286 109 0 36 chrX 35326196 35326251 -141647889 + FAM SINE Alu 127 179 0 609 188 141 47 chrX 35326266 35326458 -141647682 + AluJo SINE Alu 3 212 -100 273 315 46 19 chrX 35327700 35327808 -141646332 + MIR SINE MIR 79 189 -73 2721 144 48 9 chrX 35327908 35328365 -141645775 - Tigger1 DNA MER2_type -1 2417 1943 * 5104 146 69 50 chrX 35328360 35329184 -141644956 - Tigger1 DNA MER2_type -1379 1039 191 1364 104 19 5 chrX 35329184 35329396 -141644744 + L1MA2 LINE L1 6090 6304 0 5104 146 69 50 chrX 35329396 35329591 -141644549 - Tigger1 DNA MER2_type -2227 191 1 1848 111 0 27 chrX 35330170 35330467 -141643673 - AluY SINE Alu -19 292 4 532 294 80 116 chrX 35332095 35332493 -141641647 - L2 LINE L2 -2 3270 2887 186 233 217 0 chrX 35333125 35333185 -141640955 - MIR SINE MIR -63 145 73 2598 122 16 0 chrX 35333344 35333728 -141640412 - Tigger1 DNA MER2_type -86 2332 1943 * 4859 135 16 87 chrX 35333723 35334547 -141639593 - Tigger1 DNA MER2_type -1379 1039 204 1397 91 34 0 chrX 35334547 35334756 -141639384 + L1MA2 LINE L1 6089 6304 0 4859 135 16 87 chrX 35334756 35334946 -141639194 - Tigger1 DNA MER2_type -2214 204 2 1835 156 7 0 chrX 35335509 35335810 -141638330 - AluSg SINE Alu -5 305 3 275 0 29 0 chrX 35336523 35336558 -141637582 + (CA)n Simple_repeat Simple_repeat 2 37 0 351 221 0 0 chrX 35336736 35336813 -141637327 - L1ME LINE L1 -430 5691 5615 382 277 10 10 chrX 35336815 35336916 -141637224 - L2 LINE L2 -2 3311 3211 270 0 0 0 chrX 35336942 35336972 -141637168 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 882 173 36 18 chrX 35336978 35337146 -141636994 - AluJo SINE Alu -30 282 112 298 308 8 60 chrX 35337708 35337841 -141636299 - MIR SINE MIR -88 174 49 509 176 44 0 chrX 35338890 35338981 -141635159 - MSTC LTR MaLR -333 95 1 804 196 36 50 chrX 35338993 35339117 -141635023 - MLT1D LTR MaLR -289 216 95 2146 101 3 3 chrX 35339117 35339414 -141634726 - AluSg SINE Alu -13 297 1 804 196 36 50 chrX 35339414 35339508 -141634632 - MLT1D LTR MaLR -410 95 1 1609 210 23 84 chrX 35339508 35339946 -141634194 - MLT1D-int LTR MaLR 0 1371 961 828 226 67 108 chrX 35339954 35340268 -141633872 - MLT1D-int LTR MaLR -574 797 497 329 313 33 42 chrX 35340326 35340540 -141633600 + MER83B-int LTR ERV1 2950 3161 -1719 1998 114 0 60 chrX 35340617 35340949 -141633191 - AluSx SINE Alu 0 312 1 1042 231 109 0 chrX 35341167 35341405 -141632735 - MER65-int LTR ERV1 -816 4055 3792 894 146 156 42 chrX 35341405 35341597 -141632543 + MER4B LTR ERV1 1 214 -396 1944 125 0 7 chrX 35341602 35341907 -141632233 + AluSc SINE Alu 3 305 -4 467 138 11 0 chrX 35342016 35342103 -141632037 + (CA)n Simple_repeat Simple_repeat 2 89 0 420 216 6 3 chrX 35342269 35342367 -141631773 - L1ME LINE L1 -424 5697 5598 309 255 112 10 chrX 35342374 35342472 -141631668 - L2 LINE L2 -22 3291 3184 1680 169 17 0 chrX 35342489 35342785 -141631355 - AluJo SINE Alu -11 301 1 307 290 57 40 chrX 35343386 35343510 -141630630 - MIR SINE MIR -105 157 32 1531 176 3 22 chrX 35344298 35344611 -141629529 - AluJb SINE Alu -5 307 1 1696 113 18 14 chrX 35344840 35345122 -141629018 + AluSx SINE Alu 1 283 -29 1895 134 13 19 chrX 35345555 35345869 -141628271 + AluSx SINE Alu 1 312 0 933 138 7 0 chrX 35346496 35346641 -141627499 + AluSg SINE Alu 2 147 -163 474 189 19 28 chrX 35346971 35347077 -141627063 - MER65C LTR ERV1 0 461 357 228 294 55 37 chrX 35347242 35347351 -141626789 - MIR SINE MIR -73 189 79 217 366 0 0 chrX 35348663 35348734 -141625406 - MIR SINE MIR -113 149 79 359 209 35 12 chrX 35348775 35348861 -141625279 + MIR SINE MIR 141 228 -34 352 100 100 0 chrX 35349435 35349495 -141624645 + L1MB7 LINE L1 6091 6156 -28 1829 144 0 3 chrX 35350302 35350601 -141623539 + AluSq SINE Alu 5 302 -11 1381 184 4 11 chrX 35350820 35351098 -141623042 + AluJo SINE Alu 1 276 -36 570 29 0 0 chrX 35351110 35351178 -141622962 + (GAAA)n Simple_repeat Simple_repeat 3 70 0 834 174 29 17 chrX 35352148 35352320 -141621820 + AluSq SINE Alu 121 294 -19 472 190 234 38 chrX 35352489 35352647 -141621493 + MER67C LTR ERV1 17 205 -505 571 122 0 0 chrX 35352650 35352732 -141621408 - AluJ/FLAM SINE Alu -229 83 2 989 215 72 5 chrX 35352733 35352956 -141621184 + MER67C LTR ERV1 192 429 -281 1777 157 3 0 chrX 35353069 35353362 -141620778 - AluSg SINE Alu -16 294 1 1782 145 16 19 chrX 35353954 35354264 -141619876 - AluSx SINE Alu -1 311 3 189 0 0 0 chrX 35354272 35354293 -141619847 + (T)n Simple_repeat Simple_repeat 1 21 0 1740 131 3 7 chrX 35354707 35354990 -141619150 - AluSx SINE Alu -27 285 4 1655 188 0 0 chrX 35355221 35355519 -141618621 + AluJo SINE Alu 1 298 -14 1732 152 0 0 chrX 35355533 35355840 -141618300 + AluY SINE Alu 6 312 0 588 129 12 0 chrX 35355979 35356064 -141618076 - AluSg1 SINE Alu -222 87 2 2595 189 80 35 chrX 35356070 35356564 -141617576 - L1MC/D LINE L1 -537 5822 5352 1728 136 19 35 chrX 35356564 35356880 -141617260 - AluSx SINE Alu -1 311 1 2595 189 80 35 chrX 35356880 35357478 -141616662 - L1MC/D LINE L1 -1007 5352 4676 1873 128 0 3 chrX 35357486 35357774 -141616366 - AluSx SINE Alu -24 288 2 275 272 87 55 chrX 35357830 35358139 -141616001 + L1M4 LINE L1 4789 5107 -1039 2447 103 0 0 chrX 35559178 35559490 -141414650 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 35559490 35559762 -141414378 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 35559790 35560088 -141414052 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 35560109 35560252 -141413888 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 35560684 35560728 -141413412 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 35560728 35560863 -141413277 + AluSq/x SINE Alu 1 135 -177 2350 90 0 0 chrX 35560863 35561153 -141412987 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 35561216 35561512 -141412628 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 35561672 35561785 -141412355 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 35561789 35561891 -141412249 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 35561891 35562196 -141411944 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 35562196 35562322 -141411818 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 35562322 35562631 -141411509 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 35562631 35562655 -141411485 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 35562669 35562848 -141411292 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 35562848 35563148 -141410992 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 35563148 35563165 -141410975 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 35563272 35563423 -141410717 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 35564133 35564423 -141409717 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 35565439 35565603 -141408537 - MLT1B LTR MaLR -12 378 202 1790 155 11 3 chrX 35565649 35565933 -141408207 - AluJb SINE Alu -6 306 21 2387 102 3 0 chrX 35565951 35566255 -141407885 - AluSp SINE Alu -7 306 2 822 181 0 0 chrX 35566259 35566392 -141407748 - FLAM_A SINE Alu 0 133 1 563 167 220 23 chrX 35566421 35566553 -141407587 + AluJb SINE Alu 83 240 -72 1971 134 39 11 chrX 35566599 35566883 -141407257 + AluSx SINE Alu 1 292 -20 962 139 13 6 chrX 35566888 35567046 -141407094 - MLT1B LTR MaLR -231 159 1 276 194 45 15 chrX 35567051 35567118 -141407022 - MLT1A1-int LTR MaLR -2 1733 1665 492 158 0 0 chrX 35567123 35567205 -141406935 - AluSg/x SINE Alu -13 296 215 716 157 0 0 chrX 35567205 35567313 -141406827 - AluSq/x SINE Alu -199 113 6 3164 205 46 89 chrX 35567331 35567568 -141406572 - MLT1A1-int LTR MaLR -81 1290 1044 1943 158 0 0 chrX 35567568 35567859 -141406281 + AluJb SINE Alu 3 293 -19 3164 205 46 89 chrX 35567859 35568721 -141405419 - MLT1A1-int LTR MaLR -327 1044 132 1749 144 111 15 chrX 35568721 35569054 -141405086 - MLT1A1 LTR MaLR 0 365 1 3164 205 46 89 chrX 35569054 35569181 -141404959 - MLT1A1-int LTR MaLR -1239 132 1 1935 175 48 13 chrX 35569181 35569558 -141404582 - MLT1B LTR MaLR 0 390 1 1624 182 30 69 chrX 35570341 35570747 -141403393 - MLT1B LTR MaLR 0 390 1 2257 101 0 10 chrX 35571611 35571908 -141402232 + AluSq SINE Alu 1 294 -19 327 301 65 13 chrX 35571997 35572150 -141401990 + L2 LINE L2 2798 2958 -356 387 248 45 45 chrX 35572163 35572235 -141401905 + MIR SINE MIR 86 160 -102 1529 153 78 98 chrX 35572235 35572608 -141401532 + MSTC LTR MaLR 1 365 -63 1536 172 23 8 chrX 35572608 35572870 -141401270 - AluJo SINE Alu -9 303 38 1529 153 78 98 chrX 35572870 35572933 -141401207 + MSTC LTR MaLR 365 428 0 387 248 45 45 chrX 35572933 35572993 -141401147 + MIR SINE MIR 159 218 -44 184 265 0 0 chrX 35573040 35573089 -141401051 + L2 LINE L2 2601 2649 -665 2490 63 0 16 chrX 35573556 35573871 -141400269 - AluY SINE Alu -1 310 1 1908 157 0 17 chrX 35574101 35574401 -141399739 - AluJo SINE Alu -17 295 1 350 278 103 24 chrX 35574506 35574632 -141399508 + LTR33 LTR ERVL 3 138 -383 335 158 12 37 chrX 35575059 35575141 -141398999 - L1ME3A LINE L1 -5 6165 6086 1904 125 10 7 chrX 35575195 35575484 -141398656 - AluJo SINE Alu -22 290 1 2050 134 3 7 chrX 35575509 35575808 -141398332 + AluJo SINE Alu 3 300 -12 639 279 70 12 chrX 35576922 35577166 -141396974 - L2 LINE L2 -246 3067 2810 238 342 13 0 chrX 35577196 35577272 -141396868 - L2 LINE L2 -685 2629 2553 191 308 26 0 chrX 35577346 35577424 -141396716 - L2 LINE L2 -273 2999 2920 255 263 13 0 chrX 35577721 35577797 -141396343 + L2 LINE L2 2790 2866 -448 1852 109 64 36 chrX 35578103 35578244 -141395896 + MER44D DNA MER2_type 1 137 -2354 2162 131 19 38 chrX 35578244 35578534 -141395606 + MER47A DNA MER2_type 1 295 -2028 1705 123 99 44 chrX 35578534 35578683 -141395457 - AluSx SINE Alu -3 309 170 2289 113 3 0 chrX 35578683 35578985 -141395155 - AluSq SINE Alu -10 303 1 1842 138 87 7 chrX 35578993 35579282 -141394858 - AluSx SINE Alu 0 312 1 1705 123 99 44 chrX 35579282 35579416 -141394724 - AluSx SINE Alu -148 164 1 2162 131 19 38 chrX 35579416 35579498 -141394642 + MER47A DNA MER2_type 295 366 0 1852 109 64 36 chrX 35579498 35579686 -141394454 + MER44D DNA MER2_type 137 609 0 553 226 19 138 chrX 35579689 35579764 -141394376 - L1MC/D LINE L1 -2143 5665 5583 2309 83 7 3 chrX 35579764 35580052 -141394088 - AluSc SINE Alu -20 289 1 553 226 19 138 chrX 35580052 35580120 -141394020 - L1MC/D LINE L1 -2225 5583 5564 2518 68 0 0 chrX 35580120 35580416 -141393724 + AluY SINE Alu 1 296 -15 553 226 19 138 chrX 35580416 35580532 -141393608 - L1MC/D LINE L1 -2244 5564 5436 2376 96 0 10 chrX 35580837 35581138 -141393002 - AluSx SINE Alu -14 298 1 259 267 41 82 chrX 35581675 35581821 -141392319 + MIR SINE MIR 113 252 -10 204 279 44 0 chrX 35581999 35582067 -141392073 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 728 237 77 55 chrX 35582150 35582226 -141391914 + L1MC4 LINE L1 7704 7777 -265 1406 164 95 78 chrX 35582226 35582446 -141391694 - MLT1A1 LTR MaLR 0 365 150 2442 86 0 10 chrX 35582446 35582747 -141391393 + AluSx SINE Alu 2 299 -13 2593 71 0 0 chrX 35582749 35583060 -141391080 + AluY SINE Alu 1 311 0 1406 164 95 78 chrX 35583060 35583195 -141390945 - MLT1A1 LTR MaLR -215 150 1 728 237 77 55 chrX 35583195 35583443 -141390697 + L1MC4 LINE L1 7777 8035 -7 821 225 72 36 chrX 35583536 35583785 -141390355 - MIR SINE MIR -1 261 4 224 170 19 19 chrX 35583824 35583877 -141390263 + (CAGAGA)n Simple_repeat Simple_repeat 2 54 0 295 278 52 0 chrX 35583926 35584023 -141390117 + MIR SINE MIR 65 166 -96 2469 76 0 3 chrX 35584172 35584473 -141389667 + AluSx SINE Alu 1 300 -12 444 278 41 115 chrX 35584510 35584630 -141389510 - L1MC/D LINE L1 -1312 4834 4743 2132 142 0 0 chrX 35584630 35584933 -141389207 - AluJb SINE Alu -9 303 1 444 278 41 115 chrX 35584933 35585082 -141389058 - L1MC/D LINE L1 -1403 4743 4585 1846 143 50 0 chrX 35585573 35585853 -141388287 - AluJb SINE Alu -18 294 1 2158 114 4 0 chrX 35586038 35586318 -141387822 - AluSq SINE Alu -32 281 1 2271 133 0 0 chrX 35586495 35586804 -141387336 - AluSq SINE Alu -4 309 1 356 294 11 53 chrX 35586806 35586993 -141387147 - L1M4 LINE L1 -1226 4920 4742 1293 35 0 0 chrX 35586997 35587140 -141387000 - AluY SINE Alu -15 296 154 264 258 60 40 chrX 35587154 35587179 -141386961 - L1M4 LINE L1 -1430 4716 4693 2535 74 0 0 chrX 35587179 35587476 -141386664 - AluY SINE Alu -14 297 1 264 258 60 40 chrX 35587476 35587601 -141386539 - L1M4 LINE L1 -1453 4693 4563 805 196 15 49 chrX 35587617 35587821 -141386319 - MER46C DNA MER2_type -66 272 76 236 77 26 0 chrX 35587834 35587873 -141386267 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2235 79 4 0 chrX 35587876 35588142 -141385998 - AluSc SINE Alu -42 267 1 2168 92 27 20 chrX 35588142 35588437 -141385703 - AluSg SINE Alu -13 297 1 468 307 62 11 chrX 35588468 35588647 -141385493 - L1M4 LINE L1 -3728 2418 2231 1287 103 0 0 chrX 35588706 35588871 -141385269 - AluSg/x SINE Alu -14 296 132 2342 94 10 0 chrX 35588871 35589168 -141384972 - AluY SINE Alu -11 300 1 2244 125 0 0 chrX 35589311 35589607 -141384533 - AluSx SINE Alu -16 296 1 202 77 96 0 chrX 35589741 35589793 -141384347 + (TA)n Simple_repeat Simple_repeat 1 57 0 387 310 83 45 chrX 35589884 35590126 -141384014 - HAL1 LINE L1 -824 1683 1433 1858 132 14 24 chrX 35590128 35590416 -141383724 - AluJb SINE Alu -2 310 26 2423 92 0 0 chrX 35590416 35590710 -141383430 + AluSx SINE Alu 1 294 -18 259 138 0 102 chrX 35590711 35590770 -141383370 - AluJb SINE Alu -266 36 1 2294 106 0 32 chrX 35590785 35591096 -141383044 + AluSx SINE Alu 1 301 -11 383 305 28 7 chrX 35591166 35591307 -141382833 - HAL1 LINE L1 -1187 1320 1177 844 277 66 25 chrX 35591419 35591813 -141382327 - L2 LINE L2 -594 2720 2311 231 233 17 0 chrX 35591918 35591978 -141382162 - MLT1J LTR MaLR -45 466 406 402 77 0 0 chrX 35591988 35592040 -141382100 + AluSx SINE Alu 1 52 -248 4209 180 28 57 chrX 35592040 35593038 -141381102 - LTR5 LTR ERVK 0 969 1 1794 98 41 4 chrX 35593040 35593286 -141380854 + AluSx SINE Alu 50 304 -8 2044 118 17 10 chrX 35593464 35593760 -141380380 + AluJo SINE Alu 1 298 -14 2121 112 0 14 chrX 35593761 35593879 -141380261 + AluSx SINE Alu 19 137 -175 2370 101 3 0 chrX 35593879 35594177 -141379963 + AluSp SINE Alu 1 299 -14 2121 112 0 14 chrX 35594177 35594343 -141379797 + AluSx SINE Alu 137 299 -13 2276 113 0 3 chrX 35594345 35594647 -141379493 + AluSx SINE Alu 1 301 -11 334 313 31 16 chrX 35594705 35594833 -141379307 + MIR SINE MIR 28 157 -105 596 328 43 4 chrX 35594876 35595111 -141379029 + MIR SINE MIR 19 262 0 256 246 0 0 chrX 35595128 35595189 -141378951 + MIR SINE MIR 201 261 -1 397 204 41 0 chrX 35598221 35598319 -141375821 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 35598678 35598760 -141375380 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 35599743 35600040 -141374100 - AluSx SINE Alu -13 299 1 1901 215 104 10 chrX 35600370 35600431 -141373709 - MLT1F LTR MaLR -8 534 480 2279 105 10 3 chrX 35600431 35600737 -141373403 + AluSx SINE Alu 1 308 -4 1901 215 104 10 chrX 35600737 35601163 -141372977 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 35601207 35601238 -141372902 + AT_rich Low_complexity Low_complexity 1 31 0 2091 99 3 20 chrX 35601252 35601546 -141372594 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 35601631 35601944 -141372196 + AluJb SINE Alu 1 309 -3 2499 50 0 50 chrX 35602086 35602405 -141371735 + AluY SINE Alu 1 303 -8 1347 65 0 60 chrX 35602405 35602590 -141371550 + AluY SINE Alu 133 306 -5 2147 124 14 0 chrX 35602662 35602952 -141371188 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 35603067 35603374 -141370766 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 35603376 35603508 -141370632 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 35603518 35603798 -141370342 + AluSx SINE Alu 5 298 -14 822 281 103 58 chrX 35603798 35604420 -141369720 + L1 LINE L1 3200 3860 -2286 2379 102 0 0 chrX 35604420 35604723 -141369417 + AluSg SINE Alu 1 303 -7 822 281 103 58 chrX 35604723 35604820 -141369320 + L1 LINE L1 3860 3951 -2195 900 175 0 0 chrX 35604830 35604967 -141369173 + FLAM_C SINE Alu 1 137 -6 680 276 104 84 chrX 35604976 35605049 -141369091 + L1 LINE L1 3961 4031 -2115 2360 101 0 3 chrX 35605049 35605346 -141368794 - AluSq SINE Alu -17 296 1 680 276 104 84 chrX 35605346 35605532 -141368608 + L1 LINE L1 4031 4212 -1934 2568 78 0 0 chrX 35605532 35605841 -141368299 + AluY SINE Alu 1 309 -2 680 276 104 84 chrX 35605841 35605880 -141368260 + L1 LINE L1 4212 4249 -1897 2335 91 0 7 chrX 35605880 35606178 -141367962 + AluSq SINE Alu 1 296 -17 680 276 104 84 chrX 35606178 35606395 -141367745 + L1 LINE L1 4249 4555 -1591 1654 211 112 19 chrX 35606405 35606890 -141367250 - MLT1F LTR MaLR -23 519 1 2348 96 3 0 chrX 35606915 35607206 -141366934 + AluSp SINE Alu 1 292 -21 1151 129 6 0 chrX 35607264 35607427 -141366713 - FRAM SINE Alu -12 164 1 1958 73 84 25 chrX 35607649 35607923 -141366217 + AluY SINE Alu 1 290 -21 1854 52 9 0 chrX 35607922 35608135 -141366005 + AluSc SINE Alu 80 294 -15 * 409 240 174 0 chrX 35608143 35608264 -141365876 + FLAM_A SINE Alu 1 142 0 616 303 89 7 chrX 35608279 35608471 -141365669 + L1 LINE L1 4821 4996 -1150 2390 109 0 0 chrX 35608471 35608784 -141365356 + AluSq SINE Alu 1 313 0 616 303 89 7 chrX 35608784 35608843 -141365297 + L1 LINE L1 4996 5049 -1097 2343 101 0 0 chrX 35608843 35609131 -141365009 + AluSg SINE Alu 1 288 -22 616 303 89 7 chrX 35609131 35609308 -141364832 + L1 LINE L1 5049 5308 -838 2328 89 0 30 chrX 35609599 35609903 -141364237 - AluSg SINE Alu -14 296 2 1982 71 0 78 chrX 35610001 35610284 -141363856 - AluSg SINE Alu -49 261 1 1643 95 9 0 chrX 35614394 35614604 -141359536 + AluSg/x SINE Alu 83 294 -16 1987 88 8 0 chrX 35614843 35615094 -141359046 + AluSx SINE Alu 42 294 -18 200 329 13 13 chrX 35615401 35615477 -141358663 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 35616827 35616905 -141357235 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 35616905 35617204 -141356936 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 35617204 35617236 -141356904 + MIR SINE MIR 190 219 -43 399 203 220 0 chrX 35617466 35617584 -141356556 + MER46C DNA MER2_type 86 229 -109 679 216 91 143 chrX 35617720 35617833 -141356307 - LTR47B LTR ERVL -5 438 321 2069 115 14 3 chrX 35617833 35618120 -141356020 + AluSx SINE Alu 1 290 -22 679 216 91 143 chrX 35618120 35618348 -141355792 - LTR47B LTR ERVL -122 321 125 2210 52 0 4 chrX 35618348 35618615 -141355525 - AluY SINE Alu -45 266 1 679 216 91 143 chrX 35618615 35618734 -141355406 - LTR47B LTR ERVL -318 125 1 2241 111 3 0 chrX 35618817 35619114 -141355026 + AluSx SINE Alu 1 298 -14 1403 172 55 65 chrX 35619866 35620182 -141353958 + AluJb SINE Alu 1 313 0 1832 178 3 25 chrX 35620269 35620584 -141353556 - AluJb SINE Alu -4 308 1 4899 167 62 35 chrX 35620645 35620709 -141353431 - L1MA9 LINE L1 0 6312 6251 2373 90 0 3 chrX 35620709 35621008 -141353132 + AluSx SINE Alu 1 298 -14 4899 167 62 35 chrX 35621008 35621615 -141352525 - L1MA9 LINE L1 -61 6251 5662 2427 82 13 0 chrX 35621615 35621919 -141352221 - AluY SINE Alu -1 310 3 4899 167 62 35 chrX 35621919 35622025 -141352115 - L1MA9 LINE L1 -650 5662 5560 2145 154 0 0 chrX 35622025 35622337 -141351803 - AluSx SINE Alu 0 312 1 4899 167 62 35 chrX 35622337 35622693 -141351447 - L1MA9 LINE L1 -752 5560 5215 2077 100 46 4 chrX 35622693 35622973 -141351167 - AluSx SINE Alu -20 292 1 4899 167 62 35 chrX 35622973 35623235 -141350905 - L1MA9 LINE L1 -1097 5215 4872 2203 82 0 41 chrX 35623235 35623526 -141350614 + AluSg SINE Alu 1 279 -31 4899 167 62 35 chrX 35623526 35623586 -141350554 - L1MA9 LINE L1 -1440 4872 4815 290 119 0 0 chrX 35623621 35623663 -141350477 - MER57A LTR ERV1 -67 336 295 315 71 0 0 chrX 35623696 35623738 -141350402 + (TG)n Simple_repeat Simple_repeat 2 43 0 990 163 0 19 chrX 35623744 35623887 -141350253 - AluJo SINE Alu -35 277 136 2359 82 10 0 chrX 35623887 35624181 -141349959 - AluSp SINE Alu -16 297 1 990 163 0 19 chrX 35624181 35624197 -141349943 - AluJo SINE Alu -176 136 121 717 87 63 0 chrX 35624197 35624324 -141349816 - L1MA2 LINE L1 -172 6132 5998 * 1080 184 179 25 chrX 35624322 35624393 -141349747 - L1MA9 LINE L1 -2471 3675 3616 2141 118 17 7 chrX 35624393 35624690 -141349450 - AluSx SINE Alu -12 300 1 1080 184 179 25 chrX 35624690 35624858 -141349282 - L1MA9 LINE L1 -2530 3616 3475 2037 155 0 3 chrX 35624858 35625155 -141348985 - AluJb SINE Alu -15 297 2 1080 184 179 25 chrX 35625155 35625382 -141348758 - L1MA9 LINE L1 -2671 3475 3038 1786 138 0 4 chrX 35625384 35625645 -141348495 - AluJo SINE Alu 0 312 53 2258 85 31 3 chrX 35625645 35625938 -141348202 + AluSx SINE Alu 1 302 -10 399 131 0 16 chrX 35625942 35626003 -141348137 - AluJo SINE Alu -242 60 1 549 217 7 7 chrX 35626003 35626146 -141347994 - L1MA9 LINE L1 -3267 2879 2737 258 347 93 0 chrX 35626182 35626375 -141347765 - L2 LINE L2 -131 3182 2972 1627 237 125 6 chrX 35626385 35626857 -141347283 + REP3 LTR ERV 6 533 -29 1501 185 108 16 chrX 35626868 35627305 -141346835 - L2 LINE L2 -340 2974 2498 787 240 20 80 chrX 35627390 35627600 -141346540 + MIR SINE MIR 7 228 -34 2240 106 14 0 chrX 35627600 35627892 -141346248 + AluSx SINE Alu 1 296 -16 186 43 0 0 chrX 35627895 35627918 -141346222 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 787 240 20 80 chrX 35627918 35627953 -141346187 + MIR SINE MIR 230 241 -21 201 333 0 0 chrX 35628060 35628144 -141345996 - L2 LINE L2 -421 2892 2809 1103 76 0 0 chrX 35628352 35628509 -141345631 + L1PA8 LINE L1 6016 6172 0 308 263 223 17 chrX 35628535 35628710 -141345430 + MIR SINE MIR 48 258 -4 349 284 20 0 chrX 35628710 35628812 -141345328 + L1M4 LINE L1 3787 3890 -2256 2175 114 7 0 chrX 35629100 35629390 -141344750 - AluSx SINE Alu -20 292 1 1408 171 13 0 chrX 35629986 35630220 -141343920 - AluJb SINE Alu 0 312 76 230 229 0 16 chrX 35630221 35630282 -141343858 + L1M4 LINE L1 108 167 -6375 1484 117 15 0 chrX 35630282 35630488 -141343652 + AluSx SINE Alu 12 220 -92 661 119 0 0 chrX 35630490 35630591 -141343549 - AluS SINE Alu -211 102 2 32 26 0 0 chrX 35630648 35630687 -141343453 + AT_rich Low_complexity Low_complexity 1 39 0 663 148 0 90 chrX 35630939 35631094 -141343046 + FLAM_C SINE Alu 2 142 -1 1726 177 37 0 chrX 35631100 35631371 -141342769 - AluJb SINE Alu -31 281 1 2339 98 0 7 chrX 35631390 35631696 -141342444 - AluSq SINE Alu -9 304 1 2018 131 42 0 chrX 35631698 35631981 -141342159 - AluJb SINE Alu -15 297 3 207 0 0 0 chrX 35631996 35632019 -141342121 + (A)n Simple_repeat Simple_repeat 1 23 0 526 200 26 61 chrX 35632044 35632136 -141342004 + MIR SINE MIR 100 184 -78 2144 132 3 0 chrX 35632136 35632431 -141341709 + AluSx SINE Alu 1 296 -16 526 200 26 61 chrX 35632431 35632508 -141341632 + MIR SINE MIR 184 262 0 2603 64 0 3 chrX 35632905 35633217 -141340923 + AluY SINE Alu 1 311 0 2423 93 0 0 chrX 35633426 35633728 -141340412 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 35635505 35635583 -141338557 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 35635646 35635788 -141338352 - L2 LINE L2 -632 2682 2525 2156 57 49 0 chrX 35637315 35637579 -141336561 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 35638807 35638840 -141335300 + (TAG)n Simple_repeat Simple_repeat 2 34 0 614 234 28 7 chrX 35638845 35638990 -141335150 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 35639013 35639052 -141335088 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 35639108 35639273 -141334867 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 35639521 35639818 -141334322 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 35639866 35640172 -141333968 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 35640488 35640656 -141333484 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 35641072 35641107 -141333033 - U2 snRNA snRNA -153 35 1 248 231 0 0 chrX 35641730 35641782 -141332358 - L2 LINE L2 0 3272 3221 946 241 158 25 chrX 35641799 35642072 -141332068 - L2 LINE L2 0 3313 3078 2213 116 7 0 chrX 35642072 35642364 -141331776 - AluJo SINE Alu -18 294 1 946 241 158 25 chrX 35642364 35642763 -141331377 - L2 LINE L2 -235 3078 2563 2595 170 12 83 chrX 35643541 35643845 -141330295 - MER68 LTR ERV1 0 562 238 2014 123 0 39 chrX 35643845 35644155 -141329985 - AluSx SINE Alu 0 312 15 2595 170 12 83 chrX 35644155 35644268 -141329872 - MER68 LTR ERV1 -324 238 119 2453 76 0 10 chrX 35644268 35644571 -141329569 - AluSc SINE Alu -9 300 1 2595 170 12 83 chrX 35644571 35644613 -141329527 - MER68 LTR ERV1 -443 119 76 2014 138 33 7 chrX 35644613 35644917 -141329223 - AluJb SINE Alu 0 312 1 2595 170 12 83 chrX 35644917 35645060 -141329080 - MER68 LTR ERV1 -486 76 1 2492 73 0 3 chrX 35645558 35645861 -141328279 + AluY SINE Alu 1 302 -9 2387 78 24 0 chrX 35645862 35646156 -141327984 + AluSc SINE Alu 1 301 -8 2331 89 3 3 chrX 35646465 35646756 -141327384 + AluSp SINE Alu 1 291 -22 2465 62 0 13 chrX 35646897 35647201 -141326939 - AluY SINE Alu -11 300 1 2297 89 0 0 chrX 35647256 35647564 -141326576 - AluSx SINE Alu 0 308 1 2559 71 0 3 chrX 35647812 35648122 -141326018 - AluSc SINE Alu 0 309 1 1207 102 0 6 chrX 35648993 35649150 -141324990 - AluSg/x SINE Alu -14 298 143 2344 97 7 0 chrX 35649156 35649455 -141324685 - AluSx SINE Alu -11 301 1 2184 118 0 3 chrX 35649565 35649869 -141324271 - AluSx SINE Alu -9 303 1 656 84 0 0 chrX 35650619 35650714 -141323426 - AluSc SINE Alu -5 304 210 2546 66 0 0 chrX 35650622 35650923 -141323217 - AluSc SINE Alu -8 301 1 2074 125 10 7 chrX 35650987 35651275 -141322865 + AluSx SINE Alu 6 294 -18 445 156 0 44 chrX 35651919 35652009 -141322131 + AluJ/FRAM SINE Alu 226 311 -1 2162 136 7 0 chrX 35652275 35652583 -141321557 - AluSx SINE Alu -2 310 1 742 169 0 37 chrX 35652734 35652870 -141321270 - FLAM_A SINE Alu -2 131 1 492 246 135 8 chrX 35653183 35653513 -141320627 - LTR16A LTR ERVL 0 450 17 2074 116 21 0 chrX 35653514 35653799 -141320341 - AluSx SINE Alu -21 291 1 225 234 15 15 chrX 35653899 35653974 -141320166 + MIR SINE MIR 57 132 -76 413 229 92 0 chrX 35654004 35654113 -141320027 - L2 LINE L2 0 3313 3195 397 233 0 70 chrX 35654717 35654846 -141319294 + MER31-int LTR ERV1 1159 1278 -3658 311 176 29 69 chrX 35654955 35655057 -141319083 + MER31-int LTR ERV1 1290 1387 -3549 1986 162 0 0 chrX 35655062 35655370 -141318770 + AluJb SINE Alu 5 312 0 336 279 6 45 chrX 35655632 35655811 -141318329 + MER31-int LTR ERV1 1700 1871 -3065 1245 189 0 110 chrX 35655820 35656148 -141317992 - AluJo SINE Alu -20 292 1 2265 84 11 0 chrX 35656156 35656340 -141317800 - AluY SINE Alu 0 311 122 198 0 0 0 chrX 35656340 35656362 -141317778 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2265 84 11 0 chrX 35656362 35656486 -141317654 - AluY SINE Alu -189 122 1 323 80 0 20 chrX 35656486 35656536 -141317604 - AluJb SINE Alu -166 136 88 1337 181 0 5 chrX 35656538 35656759 -141317381 - AluJo SINE Alu -92 220 1 672 179 49 12 chrX 35656961 35657123 -141317017 - Charlie1 DNA MER1_type -34 2727 2560 524 88 0 0 chrX 35657126 35657194 -141316946 + AluJ/FLAM SINE Alu 2 69 -243 1099 162 13 66 chrX 35657387 35657615 -141316525 + AluJo SINE Alu 89 304 -8 2383 70 0 10 chrX 35657819 35658117 -141316023 - AluSg SINE Alu -15 295 1 1895 129 7 4 chrX 35658243 35658522 -141315618 - AluSx SINE Alu -32 280 1 2466 76 0 10 chrX 35658524 35658826 -141315314 - AluSx SINE Alu -13 299 1 2281 89 0 0 chrX 35658853 35659158 -141314982 - AluY SINE Alu 0 305 1 2465 90 0 3 chrX 35659333 35659643 -141314497 - AluSx SINE Alu -3 309 1 2230 109 0 7 chrX 35659643 35659936 -141314204 - AluSx SINE Alu -21 291 1 743 134 126 0 chrX 35660122 35660241 -141313899 + AluSq/x SINE Alu 3 136 -177 2256 115 0 13 chrX 35660241 35660545 -141313595 + AluSx SINE Alu 1 300 -12 2178 99 25 0 chrX 35660548 35660859 -141313281 + AluSx SINE Alu 1 318 0 1668 151 48 31 chrX 35660960 35661251 -141312889 + AluJb SINE Alu 3 298 -14 195 355 0 16 chrX 35661426 35661488 -141312652 - MER5A DNA MER1_type -16 173 113 192 375 0 14 chrX 35661430 35661502 -141312638 + MER5B DNA MER1_type 21 91 -87 * 1928 164 3 6 chrX 35661607 35661919 -141312221 + AluJb SINE Alu 1 311 -1 2254 113 3 3 chrX 35662001 35662311 -141311829 + AluSx SINE Alu 1 310 -2 2212 114 3 7 chrX 35662312 35662619 -141311521 + AluSx SINE Alu 1 306 -6 1193 220 134 67 chrX 35662669 35663133 -141311007 - MLT1F LTR MaLR -47 495 1 950 201 0 44 chrX 35663272 35663476 -141310664 - AluJo SINE Alu -17 295 101 456 143 77 44 chrX 35663581 35663672 -141310468 + FRAM SINE Alu 29 122 -54 227 319 7 36 chrX 35663917 35664055 -141310085 + L1ME LINE L1 2677 2810 -3336 2241 127 0 6 chrX 35664087 35664401 -141309739 - AluJb SINE Alu 0 312 1 234 316 66 7 chrX 35664482 35664618 -141309522 + L1ME LINE L1 5483 5626 -495 2134 124 3 0 chrX 35665630 35665937 -141308203 - AluSc SINE Alu -1 308 1 296 256 0 22 chrX 35666695 35666785 -141307355 + MIR SINE MIR 141 228 -34 321 96 96 0 chrX 35667362 35667414 -141306726 + L1MB7 LINE L1 6100 6156 -28 2193 124 0 3 chrX 35668228 35668535 -141305605 + AluSq SINE Alu 3 308 -5 1743 166 3 10 chrX 35669033 35669329 -141304811 + AluJo SINE Alu 1 294 -18 189 0 0 0 chrX 35669329 35669350 -141304790 + (GA)n Simple_repeat Simple_repeat 2 22 0 336 108 154 0 chrX 35670358 35670423 -141303717 + FLAM_A SINE Alu 2 76 -57 1100 112 12 12 chrX 35670423 35670593 -141303547 - AluSg/x SINE Alu -6 304 135 246 158 0 0 chrX 35671338 35671389 -141302751 + T-rich Low_complexity Low_complexity 1 52 0 3999 18 0 0 chrX 35671389 35671842 -141302298 - L1PA3 LINE L1 0 6155 5703 563 193 88 78 chrX 35671963 35672155 -141301985 - AluJo SINE Alu -114 198 5 244 170 21 0 chrX 35672164 35672211 -141301929 - AluSg/x SINE Alu -169 133 86 911 178 131 0 chrX 35672211 35672402 -141301738 - AluJo SINE Alu -92 220 5 296 115 0 0 chrX 35672418 35672464 -141301676 - AluSq/x SINE Alu -177 125 86 889 157 112 20 chrX 35672464 35672661 -141301479 - AluJb SINE Alu -92 220 6 269 143 0 0 chrX 35672661 35672703 -141301437 - AluJo/FLAM SINE Alu -195 107 66 523 182 20 0 chrX 35672706 35672805 -141301335 + Alu SINE Alu 193 293 -18 1222 32 0 43 chrX 35672806 35672838 -141301302 + (GGGAA)n Simple_repeat Simple_repeat 1 207 0 1222 32 0 43 chrX 35672838 35673023 -141301117 + (GGGAA)n Simple_repeat Simple_repeat 3 179 0 900 148 0 22 chrX 35673099 35673281 -141300859 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 487 171 12 0 chrX 35673282 35673364 -141300776 + L1MD2 LINE L1 153 235 -6307 23 33 0 0 chrX 35673713 35673743 -141300397 + AT_rich Low_complexity Low_complexity 1 30 0 2146 102 0 0 chrX 35673754 35674028 -141300112 - AluSq SINE Alu -37 276 3 189 0 0 0 chrX 35674837 35674858 -141299282 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 930 50 100 0 chrX 35674858 35674978 -141299162 - AluY SINE Alu -179 132 1 2540 176 85 37 chrX 35674980 35675462 -141298678 - L1MD2 LINE L1 -534 5825 5368 1864 151 0 35 chrX 35675462 35675814 -141298326 - AluSx SINE Alu 0 312 1 2540 176 85 37 chrX 35675814 35676424 -141297716 - L1MD2 LINE L1 -991 5368 4675 2255 96 0 3 chrX 35676428 35676720 -141297420 - AluSx SINE Alu -21 291 1 260 283 45 65 chrX 35676859 35677106 -141297034 + L1M4 LINE L1 4882 5123 -1023 306 236 6 115 chrX 35677326 35677438 -141296702 + L1MD2 LINE L1 1566 1654 -4980 2194 123 0 0 chrX 35677438 35677746 -141296394 + AluSx SINE Alu 1 308 -4 306 236 6 115 chrX 35677746 35677807 -141296333 + L1MD2 LINE L1 1654 1720 -4914 1844 129 0 0 chrX 35677814 35678069 -141296071 + AluSq SINE Alu 35 289 -24 3592 193 86 35 chrX 35678077 35678319 -141295821 + L1MD2 LINE L1 5174 5402 -1455 249 0 0 68 chrX 35678319 35678363 -141295777 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3592 193 86 35 chrX 35678363 35678380 -141295760 + L1MD2 LINE L1 5402 5417 -1440 975 115 0 0 chrX 35678380 35678528 -141295612 + (TA)n Simple_repeat Simple_repeat 2 149 0 3592 193 86 35 chrX 35678528 35678831 -141295309 + L1MD2 LINE L1 5417 5703 -1154 1993 131 3 34 chrX 35678831 35679152 -141294988 + AluSx SINE Alu 2 312 0 3592 193 86 35 chrX 35679152 35679653 -141294487 + L1MD2 LINE L1 5703 6335 -522 2039 117 0 68 chrX 35679653 35679977 -141294163 + AluSx SINE Alu 1 302 -10 3592 193 86 35 chrX 35679977 35680231 -141293909 + L1MD2 LINE L1 6335 6575 -282 2055 139 3 0 chrX 35680231 35680533 -141293607 - AluSx SINE Alu -9 303 1 27 29 0 0 chrX 35680571 35680605 -141293535 + AT_rich Low_complexity Low_complexity 1 34 0 423 117 0 0 chrX 35681405 35681465 -141292675 + AluS SINE Alu 3 62 -256 575 146 27 180 chrX 35681469 35681697 -141292443 - LOR1-int LTR ERV1 -2378 2493 1366 2141 100 3 6 chrX 35681697 35682008 -141292132 + AluY SINE Alu 1 310 -1 1013 140 6 0 chrX 35682008 35682165 -141291975 + AluSg/x SINE Alu 132 289 -21 207 0 0 0 chrX 35682171 35682194 -141291946 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2742 189 71 34 chrX 35682198 35682912 -141291228 - LOR1-int LTR ERV1 -2561 2310 1570 958 215 31 25 chrX 35682912 35683227 -141290913 - MER34 LTR ERV1 -162 380 34 2130 132 0 3 chrX 35683746 35684057 -141290083 + AluSx SINE Alu 1 310 -2 248 102 20 0 chrX 35684060 35684109 -141290031 + (GAAAA)n Simple_repeat Simple_repeat 3 52 0 1711 136 65 4 chrX 35684416 35684695 -141289445 - AluJb SINE Alu -12 300 5 1825 224 27 10 chrX 35684695 35685105 -141289035 - MER65C LTR ERV1 -26 435 19 1930 127 11 0 chrX 35685115 35685399 -141288741 + AluSx SINE Alu 10 296 -16 1181 189 12 62 chrX 35685511 35685861 -141288279 + MER31A LTR ERV1 2 447 -38 844 203 68 0 chrX 35685864 35686027 -141288113 - FAM SINE Alu 0 175 2 986 140 0 0 chrX 35686071 35686214 -141287926 - AluJb SINE Alu -169 143 1 245 331 41 32 chrX 35686419 35686733 -141287407 - L1MEd LINE L1 -4888 1231 915 2145 117 3 0 chrX 35686745 35687069 -141287071 - AluSx SINE Alu 0 312 1 2097 137 3 0 chrX 35687069 35687369 -141286771 - AluSq SINE Alu -10 303 3 813 276 14 5 chrX 35688115 35688336 -141285804 - MIR SINE MIR -28 234 12 1588 193 7 17 chrX 35688345 35688646 -141285494 + AluJo SINE Alu 5 302 -10 1826 173 7 0 chrX 35689031 35689338 -141284802 - AluJb SINE Alu -3 309 1 325 221 63 113 chrX 35689394 35689616 -141284524 - HAL1 LINE L1 -1046 1461 1251 1322 160 10 0 chrX 35689633 35689839 -141284301 - AluSg/x SINE Alu -14 298 91 2305 105 0 0 chrX 35690468 35690772 -141283368 + AluSc SINE Alu 1 304 -5 40815 59 5 2 chrX 35691327 35696554 -141277586 + L1PA5 LINE L1 1 5248 -898 5036 46 0 0 chrX 35696554 35697181 -141276959 + L1PA5 LINE L1 5524 6153 -1 246 287 74 19 chrX 35697183 35697291 -141276849 + MIR SINE MIR 84 197 -65 2824 121 50 4 chrX 35697385 35697840 -141276300 - Tigger1 DNA MER2_type 0 2418 1943 * 5071 140 64 52 chrX 35697833 35698665 -141275475 - Tigger1 DNA MER2_type -1377 1041 192 1354 108 14 5 chrX 35698665 35698878 -141275262 + L1MA2 LINE L1 6089 6303 -1 5071 140 64 52 chrX 35698878 35699073 -141275067 - Tigger1 DNA MER2_type -2226 192 1 2162 68 61 4 chrX 35699640 35699919 -141274221 - AluY SINE Alu -16 295 1 387 217 0 0 chrX 35700849 35700932 -141273208 - L1ME LINE L1 -424 5697 5615 423 246 93 8 chrX 35700934 35701052 -141273088 - L2 LINE L2 -2 3311 3184 1857 154 20 0 chrX 35701071 35701364 -141272776 - AluJo SINE Alu -13 299 1 2004 124 0 4 chrX 35701839 35702113 -141272027 + AluSx SINE Alu 14 286 -26 198 103 0 0 chrX 35702113 35702142 -141271998 + (TA)n Simple_repeat Simple_repeat 2 30 0 3362 188 65 47 chrX 35702142 35702739 -141271401 + L1MD2 LINE L1 4678 5263 -1096 1909 146 3 23 chrX 35702739 35703040 -141271100 + AluSx SINE Alu 13 307 -5 3362 188 65 47 chrX 35703040 35703799 -141270341 + L1MD2 LINE L1 5263 6075 -284 2139 134 0 0 chrX 35703801 35704091 -141270049 - AluSx SINE Alu -22 290 1 2108 131 0 0 chrX 35704952 35705272 -141268868 + AluSp SINE Alu 2 321 0 2411 100 3 0 chrX 35706310 35706620 -141267520 - AluSp SINE Alu -2 311 1 348 164 0 0 chrX 35706896 35706957 -141267183 + L1MD2 LINE L1 6067 6127 -232 497 252 13 13 chrX 35706963 35707114 -141267026 + L1MD2 LINE L1 6194 6344 -15 1495 120 20 0 chrX 35707128 35707328 -141266812 - AluJo SINE Alu -22 290 87 788 210 100 40 chrX 35707388 35707545 -141266595 + L1MEd LINE L1 894 1040 -5079 2355 108 10 0 chrX 35707545 35707850 -141266290 + AluSq SINE Alu 1 308 -5 788 210 100 40 chrX 35707850 35707992 -141266148 + L1MEd LINE L1 1040 1211 -4908 5014 181 78 69 chrX 35708386 35708541 -141265599 + L1M4 LINE L1 15 167 -6375 2236 85 18 0 chrX 35708541 35708817 -141265323 + AluSx SINE Alu 12 295 -17 1031 45 0 8 chrX 35708817 35708951 -141265189 + (GGAA)n Simple_repeat Simple_repeat 3 135 0 5014 181 78 69 chrX 35708957 35709281 -141264859 + L1M4 LINE L1 167 487 -6055 2385 105 0 25 chrX 35709281 35709596 -141264544 + AluSc SINE Alu 1 307 -2 5014 181 78 69 chrX 35709596 35709998 -141264142 + L1M4 LINE L1 487 884 -5658 1939 126 7 34 chrX 35709998 35710154 -141263986 - AluJb SINE Alu -26 286 127 216 0 0 0 chrX 35710154 35710178 -141263962 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2404 52 0 11 chrX 35710178 35710465 -141263675 - AluY SINE Alu -27 284 1 1939 126 7 34 chrX 35710465 35710601 -141263539 - AluJb SINE Alu -183 129 1 5014 181 78 69 chrX 35710601 35710842 -141263298 + L1M4 LINE L1 884 1155 -5387 2286 127 0 0 chrX 35710842 35711150 -141262990 - AluSx SINE Alu -4 308 1 5014 181 78 69 chrX 35711150 35711356 -141262784 + L1M4 LINE L1 1155 1358 -5184 1617 166 17 38 chrX 35711433 35711614 -141262526 - AluJo SINE Alu -16 296 121 2318 99 0 0 chrX 35711614 35711945 -141262195 + AluSx SINE Alu 1 331 0 1617 166 17 38 chrX 35711945 35712052 -141262088 - AluJo SINE Alu -191 121 13 338 261 18 0 chrX 35712142 35712253 -141261887 + L1M4 LINE L1 2334 2446 -4200 1146 180 174 47 chrX 35712254 35712571 -141261569 + MLT1A1 LTR MaLR 4 360 -5 539 137 29 10 chrX 35712608 35712710 -141261430 + L1MB7 LINE L1 4439 4542 -1604 * 1196 144 61 2 chrX 35712684 35712917 -141261223 + L1MB7 LINE L1 5801 6043 -141 1827 158 39 35 chrX 35712941 35713252 -141260888 - AluJo SINE Alu 0 312 1 324 261 45 40 chrX 35713474 35713516 -141260624 + L1MC/D LINE L1 5354 5394 -2414 2006 139 13 10 chrX 35713516 35713651 -141260489 + AluJb SINE Alu 1 134 -178 1970 100 0 76 chrX 35713651 35713991 -141260149 + AluSc SINE Alu 1 317 0 2006 139 13 10 chrX 35713991 35714153 -141259987 + AluJb SINE Alu 134 302 -10 324 261 45 40 chrX 35714153 35714170 -141259970 + L1MC/D LINE L1 5394 5409 -2399 1964 147 0 13 chrX 35714170 35714470 -141259670 + AluJb SINE Alu 14 309 -3 306 0 0 0 chrX 35714478 35714512 -141259628 + (CA)n Simple_repeat Simple_repeat 2 35 0 324 261 45 40 chrX 35714512 35714618 -141259522 + L1MC/D LINE L1 5415 5530 -2278 523 291 75 18 chrX 35714619 35714897 -141259243 + L2 LINE L2 2879 3172 -141 1118 173 38 118 chrX 35714901 35715151 -141258989 - MER58B DNA MER1_type -2079 341 72 2207 97 62 0 chrX 35715151 35715441 -141258699 - AluSx SINE Alu -4 308 1 1776 141 51 14 chrX 35715443 35715719 -141258421 - AluJo SINE Alu -20 292 7 1118 173 38 118 chrX 35715719 35715811 -141258329 - MER58B DNA MER1_type -2349 71 24 546 200 61 9 chrX 35715820 35715935 -141258205 + L2 LINE L2 3193 3313 0 2143 125 3 3 chrX 35715941 35716236 -141257904 - AluSx SINE Alu -17 295 1 516 32 0 0 chrX 35716516 35716578 -141257562 + (TCC)n Simple_repeat Simple_repeat 1 62 0 241 234 21 32 chrX 35718387 35718481 -141255659 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 186 43 0 0 chrX 35718818 35718841 -141255299 + (CCCCAG)n Simple_repeat Simple_repeat 1 23 0 2344 90 3 16 chrX 35720185 35720495 -141253645 + AluSx SINE Alu 1 306 -6 2373 91 0 10 chrX 35721180 35721488 -141252652 + AluSx SINE Alu 1 305 -7 1137 93 0 0 chrX 35721488 35721628 -141252512 + AluSg/x SINE Alu 135 274 -38 914 73 40 7 chrX 35721634 35721785 -141252355 + GA-rich Low_complexity Low_complexity 2 157 0 1885 103 114 7 chrX 35722373 35722644 -141251496 + AluSg SINE Alu 1 300 -10 1239 111 12 0 chrX 35722644 35722806 -141251334 + AluSg/x SINE Alu 134 297 -15 243 0 0 0 chrX 35723170 35723197 -141250943 + (CA)n Simple_repeat Simple_repeat 1 27 0 355 264 28 22 chrX 35725879 35726057 -141248083 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 378 298 0 12 chrX 35725928 35726096 -141248044 + GA-rich Low_complexity Low_complexity 2 167 0 242 56 28 0 chrX 35729265 35729301 -141244839 + (TC)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chrX 35729301 35729321 -141244819 + (CA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 35729784 35729804 -141244336 + (A)n Simple_repeat Simple_repeat 1 20 0 2406 92 0 10 chrX 35729815 35730118 -141244022 + AluSg SINE Alu 1 300 -10 671 267 64 11 chrX 35731174 35731361 -141242779 + MIR SINE MIR 59 255 -7 425 228 57 16 chrX 35732093 35732216 -141241924 - L2 LINE L2 -8 3305 3178 2277 122 0 0 chrX 35732218 35732522 -141241618 - AluSx SINE Alu -8 304 1 702 168 0 15 chrX 35732523 35732654 -141241486 - FLAM_A SINE Alu -4 129 1 1270 211 76 59 chrX 35732708 35732798 -141241342 - MER63B DNA MER1_type -634 428 341 1714 142 11 4 chrX 35732798 35733058 -141241082 - AluJb SINE Alu -15 297 36 1270 211 76 59 chrX 35733058 35733388 -141240752 - MER63B DNA MER1_type -721 341 1 328 262 0 12 chrX 35733553 35733637 -141240503 - MIR SINE MIR -69 193 111 256 193 0 18 chrX 35736634 35736691 -141237449 + GA-rich Low_complexity Low_complexity 2 57 0 1367 253 158 30 chrX 35737284 35737437 -141236703 - L2 LINE L2 -7 3306 3174 1661 167 51 0 chrX 35737437 35737713 -141236427 + AluJo SINE Alu 1 290 -22 1367 253 158 30 chrX 35737713 35737724 -141236416 - L2 LINE L2 -139 3174 3166 2502 78 0 0 chrX 35737724 35738017 -141236123 + AluSq SINE Alu 1 293 -20 1367 253 158 30 chrX 35738017 35738798 -141235342 - L2 LINE L2 -147 3166 2238 219 248 234 50 chrX 35739960 35740178 -141233962 - L2 LINE L2 -83 3230 2973 647 223 9 185 chrX 35741064 35741362 -141232778 - L2 LINE L2 -7 3306 3114 1707 171 77 0 chrX 35741362 35741648 -141232492 - AluJb SINE Alu -4 308 1 647 223 9 185 chrX 35741648 35741802 -141232338 - L2 LINE L2 -199 3114 2934 2234 125 3 0 chrX 35741936 35742231 -141231909 - AluSx SINE Alu -16 296 1 2318 85 0 28 chrX 35742231 35742550 -141231590 - AluSx SINE Alu -2 310 1 538 202 158 5 chrX 35742660 35742859 -141231281 + L1ME LINE L1 5369 5642 -528 2421 84 0 3 chrX 35742873 35743169 -141230971 + AluSx SINE Alu 1 295 -17 1105 155 0 33 chrX 35743396 35743577 -141230563 + AluJb SINE Alu 134 308 -4 1327 219 92 39 chrX 35743860 35744325 -141229815 + Charlie4a DNA MER1_type 1 490 -18 2432 84 0 0 chrX 35744325 35744621 -141229519 - AluSx SINE Alu -14 298 3 2378 96 3 0 chrX 35744671 35744963 -141229177 + AluSx SINE Alu 1 293 -19 768 216 106 26 chrX 35746921 35746950 -141227190 - L2 LINE L2 -338 2976 2951 2402 104 0 0 chrX 35746950 35747248 -141226892 + AluSx SINE Alu 1 298 -14 768 216 106 26 chrX 35747248 35747491 -141226649 - L2 LINE L2 -363 2951 2682 433 185 33 11 chrX 35747491 35747583 -141226557 + L1ME1 LINE L1 6062 6155 -11 1021 204 0 0 chrX 35747624 35747800 -141226340 + AluJb SINE Alu 137 312 0 1462 205 57 54 chrX 35747975 35748361 -141225779 + MLT1B LTR MaLR 1 387 -3 203 338 0 0 chrX 35749248 35749322 -141224818 + (TG)n Simple_repeat Simple_repeat 1 74 0 459 125 0 0 chrX 35749817 35749889 -141224251 + (TG)n Simple_repeat Simple_repeat 2 73 0 2333 100 3 3 chrX 35750736 35751037 -141223103 + AluSp SINE Alu 1 301 -12 603 133 47 70 chrX 35751717 35751845 -141222295 - FRAM SINE Alu -7 169 45 508 268 32 21 chrX 35751944 35752134 -141222006 + MER91A DNA MER1_type 4 195 -1 988 232 55 78 chrX 35752279 35752668 -141221472 + LTR37A LTR ERV1 6 345 -81 2080 133 0 7 chrX 35752668 35752969 -141221171 + AluJb SINE Alu 1 299 -13 988 232 55 78 chrX 35752969 35753048 -141221092 + LTR37A LTR ERV1 345 424 -2 497 315 24 0 chrX 35753444 35753609 -141220531 + MIR SINE MIR 92 260 -2 232 247 26 26 chrX 35753915 35753992 -141220148 + MIR3 SINE MIR 106 182 -26 180 250 0 0 chrX 35754268 35754312 -141219828 + MIR3 SINE MIR 145 188 -20 758 259 148 60 chrX 35754404 35754890 -141219250 - MLT1K LTR MaLR 0 588 60 2431 97 3 0 chrX 35754892 35755201 -141218939 + AluSg SINE Alu 1 310 0 1618 157 107 0 chrX 35755205 35755485 -141218655 + AluJo SINE Alu 1 310 -2 296 349 18 0 chrX 35756212 35756321 -141217819 + (CCCA)n Simple_repeat Simple_repeat 3 113 0 188 361 52 0 chrX 35756332 35756429 -141217711 - L2 LINE L2 -32 3240 3139 242 329 38 6 chrX 35756503 35756661 -141217479 - L2 LINE L2 -243 3029 2867 2306 105 7 7 chrX 35756673 35756979 -141217161 + AluSx SINE Alu 1 306 -6 2188 127 3 7 chrX 35757477 35757777 -141216363 + AluSx SINE Alu 1 299 -13 2435 80 3 0 chrX 35758227 35758515 -141215625 + AluSp SINE Alu 1 289 -24 186 43 0 0 chrX 35758515 35758538 -141215602 + (GA)n Simple_repeat Simple_repeat 2 24 0 1835 166 0 23 chrX 35758897 35759064 -141215076 - AluJo SINE Alu -12 300 142 2144 110 27 7 chrX 35759064 35759356 -141214784 - AluSx SINE Alu -14 298 1 1835 166 0 23 chrX 35759356 35759495 -141214645 - AluJo SINE Alu -170 142 1 329 143 18 0 chrX 35759495 35759551 -141214589 - L1M3 LINE L1 -744 5590 5534 1254 186 98 3 chrX 35759553 35759859 -141214281 - L1MC4a LINE L1 -1615 6193 5859 1178 67 0 0 chrX 35759859 35759994 -141214146 + AluSq/x SINE Alu 1 135 -178 1947 152 3 0 chrX 35759994 35760296 -141213844 + AluSx SINE Alu 1 303 -9 1182 229 39 10 chrX 35760296 35760602 -141213538 - L1MC4a LINE L1 -1939 5869 5555 405 0 0 0 chrX 35760787 35760832 -141213308 + (CA)n Simple_repeat Simple_repeat 1 45 0 202 234 0 0 chrX 35760851 35760898 -141213242 + MIR SINE MIR 98 144 -118 2792 160 44 23 chrX 35761012 35761575 -141212565 + MER90 LTR ERV1 1 575 0 303 337 47 1 chrX 35761676 35761796 -141212344 - MIR SINE MIR -65 143 30 1362 145 114 28 chrX 35762239 35762359 -141211781 + AluJo SINE Alu 1 109 -203 2296 75 7 36 chrX 35762359 35762665 -141211475 - AluSx SINE Alu -15 297 1 1362 145 114 28 chrX 35762665 35762799 -141211341 + AluJo SINE Alu 109 277 -35 2268 102 3 0 chrX 35762834 35763158 -141210982 + AluSx SINE Alu 1 312 0 189 0 0 0 chrX 35763171 35763192 -141210948 + (GA)n Simple_repeat Simple_repeat 2 22 0 2300 230 72 39 chrX 35763193 35763391 -141210749 + L1MC4 LINE L1 7102 7292 -750 1547 171 91 0 chrX 35763391 35763655 -141210485 + AluJo SINE Alu 14 301 -11 2300 230 72 39 chrX 35763655 35764252 -141209888 + L1MC4 LINE L1 7292 7923 -119 406 208 61 99 chrX 35764523 35764735 -141209405 - L1MC4a LINE L1 -707 5463 5260 184 319 14 14 chrX 35765183 35765255 -141208885 - MIR SINE MIR -55 153 82 180 0 0 0 chrX 35765544 35765564 -141208576 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2112 105 44 7 chrX 35765581 35765877 -141208263 - AluSq SINE Alu -6 307 1 1958 104 71 4 chrX 35765877 35766157 -141207983 - AluSq SINE Alu -14 299 1 206 226 19 0 chrX 35766739 35766792 -141207348 + C-rich Low_complexity Low_complexity 2 55 0 23 0 0 0 chrX 35766801 35766824 -141207316 + GC_rich Low_complexity Low_complexity 1 23 0 205 365 11 11 chrX 35767828 35768006 -141206134 + (CATAC)n Simple_repeat Simple_repeat 3 180 0 212 186 17 0 chrX 35768007 35768066 -141206074 + (CATGC)n Simple_repeat Simple_repeat 2 61 0 572 263 128 25 chrX 35768488 35768598 -141205542 - L1MC4 LINE L1 0 8042 7945 585 64 0 0 chrX 35768598 35768676 -141205464 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 572 263 128 25 chrX 35768676 35768885 -141205255 - L1MC4 LINE L1 -97 7945 7690 435 217 0 0 chrX 35769043 35769149 -141204991 + CT-rich Low_complexity Low_complexity 1 106 0 262 283 120 0 chrX 35771423 35771515 -141202625 - MIR SINE MIR -140 122 20 1960 215 101 29 chrX 35772535 35773455 -141200685 - L2 LINE L2 -1 3312 2331 1063 236 109 36 chrX 35774206 35774646 -141199494 - L2 LINE L2 0 3313 2842 2144 108 24 3 chrX 35775398 35775685 -141198455 + AluSx SINE Alu 1 293 -19 1919 131 21 18 chrX 35775779 35776062 -141198078 - AluJo SINE Alu -14 298 15 41 0 0 19 chrX 35776068 35776096 -141198044 + AT_rich Low_complexity Low_complexity 1 29 -22 2335 94 0 0 chrX 35776096 35776383 -141197757 - AluSp SINE Alu -26 287 1 41 0 0 19 chrX 35776383 35776406 -141197734 + AT_rich Low_complexity Low_complexity 29 51 0 1151 170 16 0 chrX 35776673 35776855 -141197285 - AluJo SINE Alu -8 304 120 918 91 0 0 chrX 35777003 35777113 -141197027 - AluSq/x SINE Alu -196 116 7 294 280 216 30 chrX 35777167 35777403 -141196737 - L1MC4a LINE L1 -1844 5964 5685 526 238 189 34 chrX 35777460 35777576 -141196564 - L1MC4a LINE L1 -2246 5562 5465 2292 109 0 3 chrX 35777576 35777878 -141196262 + AluSx SINE Alu 1 301 -11 526 238 189 34 chrX 35777878 35778026 -141196114 - L1MC4a LINE L1 -2343 5465 5257 225 0 0 0 chrX 35778460 35778485 -141195655 + (CA)n Simple_repeat Simple_repeat 2 26 0 2447 103 0 0 chrX 35780523 35780835 -141193305 - AluSx SINE Alu 0 312 1 1312 191 77 4 chrX 35780835 35781107 -141193033 - AluJo SINE Alu -20 292 1 2523 67 0 0 chrX 35781135 35781433 -141192707 + AluY SINE Alu 1 298 -13 455 280 77 7 chrX 35781454 35781597 -141192543 - L1MEc LINE L1 -4096 2300 2148 37 23 0 0 chrX 35782029 35782073 -141192067 + AT_rich Low_complexity Low_complexity 1 44 0 1144 89 0 0 chrX 35782073 35782208 -141191932 + AluSq/x SINE Alu 1 135 -178 2350 90 0 0 chrX 35782208 35782498 -141191642 + AluSg SINE Alu 1 290 -20 1847 159 0 20 chrX 35782561 35782857 -141191283 - AluJo SINE Alu -22 290 1 252 292 292 0 chrX 35783017 35783130 -141191010 + MIR SINE MIR 117 262 0 379 291 87 67 chrX 35783134 35783236 -141190904 - L1MC4a LINE L1 -1865 5943 5844 1878 141 0 39 chrX 35783236 35783541 -141190599 - AluJo SINE Alu -19 293 1 379 291 87 67 chrX 35783541 35783667 -141190473 - L1MC4a LINE L1 -1964 5844 5707 2373 104 0 7 chrX 35783667 35783976 -141190164 + AluSq SINE Alu 1 307 -6 379 291 87 67 chrX 35783976 35784000 -141190140 - L1MC4a LINE L1 -2101 5707 5685 752 193 20 25 chrX 35784014 35784193 -141189947 - L1MC4a LINE L1 -687 5483 5304 1795 167 40 3 chrX 35784193 35784493 -141189647 - AluJo SINE Alu 0 312 2 752 193 20 25 chrX 35784493 35784510 -141189630 - L1MC4a LINE L1 -866 5304 5288 266 351 66 20 chrX 35784617 35784768 -141189372 - MIR SINE MIR -11 251 94 2063 148 0 0 chrX 35785478 35785768 -141188372 - AluJb SINE Alu -22 290 1 896 158 79 0 chrX 35786784 35786948 -141187192 - MLT1B LTR MaLR -12 378 202 405 99 28 0 chrX 35786994 35787065 -141187075 - Alu SINE Alu -6 306 234 373 281 106 19 chrX 35987191 35987351 -140986789 - MIR SINE MIR -43 219 46 739 233 161 9 chrX 35987529 35987752 -140986388 + MIR SINE MIR 6 262 0 231 220 17 17 chrX 35987946 35988005 -140986135 + L2 LINE L2 3214 3272 0 259 316 20 0 chrX 35988365 35988463 -140985677 + L2 LINE L2 2140 2239 -1075 239 111 0 0 chrX 35988465 35988501 -140985639 + MER63 DNA MER1_type 4 39 -891 373 127 30 96 chrX 35988501 35988619 -140985521 - L1M4 LINE L1 -407 5755 5647 484 311 130 13 chrX 35988621 35988859 -140985281 + L2 LINE L2 3007 3272 0 1555 240 45 55 chrX 35989822 35990170 -140983970 + L1ME3A LINE L1 5624 5967 -203 1810 171 3 0 chrX 35990170 35990463 -140983677 + AluJo SINE Alu 5 298 -14 1555 240 45 55 chrX 35990463 35990644 -140983496 + L1ME3A LINE L1 5967 6148 -22 550 298 57 36 chrX 35990682 35990930 -140983210 + MIR SINE MIR 8 260 -2 936 226 40 33 chrX 35990932 35991206 -140982934 - L1MCb LINE L1 -5364 681 406 1009 162 94 27 chrX 35991209 35991472 -140982668 + MLT1B LTR MaLR 5 226 -164 1880 234 96 9 chrX 35991472 35992036 -140982104 + L1MC4 LINE L1 5391 6003 -2039 * 2657 156 24 28 chrX 35991569 35992070 -140982070 + L1MB8 LINE L1 5530 6028 -150 567 228 16 0 chrX 35992099 35992226 -140981914 - L1MD3 LINE L1 -34 7961 7833 2573 205 28 15 chrX 35992228 35992770 -140981370 - L1MD2 LINE L1 -216 6143 5595 1045 93 33 0 chrX 35992778 35992928 -140981212 + L1PA14 LINE L1 5865 6019 -142 189 298 35 0 chrX 35993168 35993225 -140980915 + L2 LINE L2 3255 3313 0 222 250 0 0 chrX 35993239 35993279 -140980861 + L2 LINE L2 3199 3238 -34 397 283 66 13 chrX 35993742 35993894 -140980246 + MER5B DNA MER1_type 1 160 -18 632 187 0 0 chrX 35994194 35994301 -140979839 - AluJb SINE Alu 0 312 206 235 283 0 50 chrX 35996629 35996689 -140977451 - L2 LINE L2 -17 3255 3199 1524 249 100 7 chrX 35997702 35998163 -140975977 - L2 LINE L2 0 3313 2810 218 143 0 0 chrX 35998668 35998703 -140975437 + MIR SINE MIR 110 144 -64 2081 259 72 36 chrX 35998782 35999555 -140974585 + L1MC4a LINE L1 5366 6166 -1642 1231 274 113 34 chrX 35999798 36000364 -140973776 + L3 LINE CR1 429 1039 -538 413 226 95 51 chrX 36000449 36000586 -140973554 - MIR SINE MIR -55 207 65 * 921 175 13 0 chrX 36000582 36000736 -140973404 + MER5A DNA MER1_type 12 167 -22 229 319 14 14 chrX 36000847 36000916 -140973224 - L2 LINE L2 -4 3268 3200 244 272 9 70 chrX 36001251 36001365 -140972775 + L3 LINE CR1 1466 1572 -5 207 0 0 0 chrX 36002327 36002350 -140971790 + (TG)n Simple_repeat Simple_repeat 2 24 0 376 225 171 8 chrX 36003127 36003256 -140970884 - MIR SINE MIR -49 213 64 225 260 0 0 chrX 36004230 36004280 -140969860 + GA-rich Low_complexity Low_complexity 1 50 0 440 272 15 37 chrX 36004582 36004718 -140969422 - MIR SINE MIR -74 188 56 1348 176 0 14 chrX 36004953 36005175 -140968965 - MER20 DNA MER1_type 0 219 1 2019 131 3 34 chrX 36005214 36005535 -140968605 + AluJo SINE Alu 1 311 -1 435 236 77 112 chrX 36005535 36005768 -140968372 + MIR SINE MIR 22 246 -16 1644 67 0 0 chrX 36007534 36007728 -140966412 - AluSc SINE Alu -11 298 105 507 121 0 0 chrX 36007728 36007794 -140966346 - AluS SINE Alu -245 67 2 424 239 73 0 chrX 36008134 36008243 -140965897 - L2 LINE L2 -4 3309 3193 279 0 0 0 chrX 36008616 36008647 -140965493 + (GA)n Simple_repeat Simple_repeat 1 31 0 451 371 26 0 chrX 36009058 36009209 -140964931 - L2 LINE L2 -16 3256 3102 1133 160 27 32 chrX 36009443 36009662 -140964478 + MLT1C LTR MaLR 8 225 -242 * 1419 178 14 31 chrX 36009659 36009945 -140964195 + MLT1C LTR MaLR 187 467 0 2503 224 60 73 chrX 36009945 36010359 -140963781 + MLT1C-int LTR MaLR 1 419 -952 1153 194 54 132 chrX 36010359 36010782 -140963358 - MLT1B LTR MaLR 0 390 1 2503 224 60 73 chrX 36010782 36011470 -140962670 + MLT1C-int LTR MaLR 419 1076 -295 2577 23 0 17 chrX 36011470 36011771 -140962369 - AluY SINE Alu -15 296 1 2503 224 60 73 chrX 36011771 36012064 -140962076 + MLT1C-int LTR MaLR 1076 1371 0 1999 181 20 103 chrX 36012066 36012573 -140961567 + MLT1C LTR MaLR 3 467 0 2178 156 16 16 chrX 36012806 36013171 -140960969 + MLT1A1 LTR MaLR 1 365 0 2191 176 134 13 chrX 36013171 36013619 -140960521 + MLT1A1-int LTR MaLR 1 502 -1233 1930 261 68 18 chrX 36013616 36014186 -140959954 + L1M3b LINE L1 1 599 -5682 * 9045 149 20 33 chrX 36014318 36015011 -140959129 + L1MA7 LINE L1 3656 4357 -1934 1546 156 0 4 chrX 36015011 36015248 -140958892 - MER46A DNA MER2_type 0 236 1 9045 149 20 33 chrX 36015248 36015923 -140958217 + L1MA7 LINE L1 4357 5039 -1252 2254 149 6 43 chrX 36015923 36016272 -140957868 + MER1B DNA MER1_type 2 337 0 9045 149 20 33 chrX 36016272 36017582 -140956558 + L1MA7 LINE L1 5039 6289 -2 310 155 43 6 chrX 36017582 36017695 -140956445 + Charlie5 DNA MER1_type 2378 2530 -82 842 222 62 31 chrX 36017695 36017920 -140956220 + MLT1A1-int LTR MaLR 501 732 -639 413 207 12 0 chrX 36018023 36018105 -140956035 + MLT1A1-int LTR MaLR 682 764 -971 2092 211 53 18 chrX 36018255 36018348 -140955792 + MLT1A1-int LTR MaLR 1269 1357 -378 1595 177 174 19 chrX 36018348 36018710 -140955430 - MER47B DNA MER2_type 0 418 1 2092 211 53 18 chrX 36018710 36019066 -140955074 + MLT1A1-int LTR MaLR 1357 1734 -1 1431 172 23 19 chrX 36019109 36019365 -140954775 + MLT1A1 LTR MaLR 109 365 0 402 268 89 0 chrX 36019755 36019878 -140954262 + MER94 DNA DNA 1 134 0 313 350 60 8 chrX 36020029 36020146 -140953994 + MIR SINE MIR 22 144 -64 485 302 49 54 chrX 36020151 36020356 -140953784 - L3 LINE CR1 -2 1575 1372 303 346 75 37 chrX 36020351 36020565 -140953575 + L3 LINE CR1 1355 1576 -1 * 340 240 180 0 chrX 36022705 36022805 -140951335 - L2 LINE L2 0 3313 3196 431 310 16 16 chrX 36023005 36023134 -140951006 + MIR SINE MIR 8 136 -126 960 295 8 8 chrX 36023790 36024044 -140950096 - MIR SINE MIR -3 259 6 342 0 0 0 chrX 36025686 36025724 -140948416 + (CA)n Simple_repeat Simple_repeat 2 39 0 5186 192 60 13 chrX 36026116 36027109 -140947031 + MER45B DNA AcHobo 1 1040 0 432 269 19 9 chrX 36027857 36027965 -140946175 + L2 LINE L2 2688 2796 -518 930 249 5 33 chrX 36028328 36028541 -140945599 + Charlie8 DNA MER1_type 27 233 -2184 342 98 0 0 chrX 36028615 36028666 -140945474 + (CA)n Simple_repeat Simple_repeat 2 52 0 238 258 0 16 chrX 36029508 36029570 -140944570 + L3 LINE CR1 435 495 -1082 5650 140 13 42 chrX 36029871 36030666 -140943474 + L1MC2 LINE L1 5427 6191 -153 312 27 0 0 chrX 36030666 36030703 -140943437 + (TAA)n Simple_repeat Simple_repeat 1 37 0 5650 140 13 42 chrX 36030703 36030848 -140943292 + L1MC2 LINE L1 6191 6339 -5 225 0 0 0 chrX 36031284 36031309 -140942831 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2294 41 21 14 chrX 36032498 36032789 -140941351 + AluY SINE Alu 1 293 -18 1604 164 50 14 chrX 36034127 36034408 -140939732 - AluJo SINE Alu -21 291 1 569 159 0 0 chrX 36034929 36035017 -140939123 + MIR SINE MIR 61 148 -114 310 225 281 0 chrX 36035162 36035251 -140938889 + MER81 DNA DNA 1 114 0 703 268 81 31 chrX 36035471 36035792 -140938348 - L1MC4a LINE L1 -1831 5977 5641 306 242 0 101 chrX 36036119 36036218 -140937922 + MIR SINE MIR 20 108 -154 299 294 49 35 chrX 36036321 36036464 -140937676 - MIR3 SINE MIR -21 187 43 412 238 217 22 chrX 36037386 36037555 -140936585 - MIR SINE MIR -54 208 6 2003 141 69 24 chrX 36037961 36038294 -140935846 - MER7A DNA MER2_type 0 346 1 219 69 0 0 chrX 36038797 36038826 -140935314 + (TG)n Simple_repeat Simple_repeat 1 29 0 297 131 0 0 chrX 36038826 36038887 -140935253 + (GA)n Simple_repeat Simple_repeat 2 62 0 271 340 30 0 chrX 36039321 36039421 -140934719 - MIR SINE MIR -8 254 152 21 82 0 0 chrX 36039672 36039721 -140934419 + AT_rich Low_complexity Low_complexity 1 49 0 244 286 86 73 chrX 36039757 36039926 -140934214 - MIR SINE MIR -59 149 16 456 307 70 42 chrX 36041390 36041605 -140932535 - MIR SINE MIR -38 224 4 395 275 170 44 chrX 36042349 36042578 -140931562 + MIR SINE MIR 2 259 -3 2794 202 30 56 chrX 36045717 36046326 -140927814 - MLT1E LTR MaLR 0 593 1 4938 186 60 28 chrX 36046578 36046793 -140927347 - L1MD2 LINE L1 -4 6355 6148 297 0 0 0 chrX 36046793 36046826 -140927314 + (TG)n Simple_repeat Simple_repeat 2 34 0 4938 186 60 28 chrX 36046826 36047376 -140926764 - L1MD2 LINE L1 -211 6148 5533 7188 174 10 1 chrX 36047376 36049418 -140924722 - L1PA14 LINE L1 -2 6159 4104 4938 186 60 28 chrX 36049418 36049871 -140924269 - L1MD2 LINE L1 -826 5533 5096 234 265 0 0 chrX 36049950 36050018 -140924122 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 209 57 29 0 chrX 36050274 36050309 -140923831 + (TA)n Simple_repeat Simple_repeat 1 36 0 233 108 15 62 chrX 36050408 36050473 -140923667 + LTR66 LTR ERVL 394 455 -155 206 316 0 0 chrX 36050729 36050786 -140923354 + G-rich Low_complexity Low_complexity 1 57 0 291 28 0 0 chrX 36051127 36051163 -140922977 + (TG)n Simple_repeat Simple_repeat 2 37 0 214 240 13 67 chrX 36052799 36052874 -140921266 + L2 LINE L2 3200 3270 -2 403 250 0 121 chrX 36053786 36053996 -140920144 - MIR SINE MIR -45 163 33 461 296 0 85 chrX 36054542 36054731 -140919409 + MIR3 SINE MIR 10 182 -26 183 374 24 37 chrX 36054747 36054993 -140919147 - L2 LINE L2 -210 3062 2820 411 333 36 5 chrX 36056560 36056755 -140917385 - L2 LINE L2 -2 3311 3111 297 284 9 9 chrX 36056798 36056914 -140917226 - L1MC4a LINE L1 -1340 6468 6353 1564 208 60 57 chrX 36056925 36057473 -140916667 - L1MC4 LINE L1 -7 8035 7486 756 280 49 12 chrX 36057473 36057823 -140916317 - L2 LINE L2 -258 3055 2698 1923 81 24 0 chrX 36057832 36058079 -140916061 + L1PA10 LINE L1 5904 6156 -12 214 182 0 0 chrX 36058092 36058136 -140916004 + A-rich Low_complexity Low_complexity 1 44 0 1797 241 69 14 chrX 36058268 36058761 -140915379 - HAL1 LINE L1 -172 2335 1816 1340 236 74 7 chrX 36058756 36059189 -140914951 - HAL1 LINE L1 -941 1566 1105 * 1789 231 45 105 chrX 36059198 36059929 -140914211 - MER21B LTR ERV1 -149 714 28 2179 98 27 7 chrX 36060014 36060310 -140913830 - L1PA16 LINE L1 -10 6156 5855 3119 231 72 43 chrX 36060318 36060600 -140913540 - HAL1 LINE L1 -1434 1073 800 2597 238 20 40 chrX 36060600 36061205 -140912935 - MLT1E LTR MaLR 0 593 1 3119 231 72 43 chrX 36061205 36061391 -140912749 - HAL1 LINE L1 -1707 800 621 2006 128 0 30 chrX 36061391 36061696 -140912444 + AluSg SINE Alu 1 296 -14 3119 231 72 43 chrX 36061696 36062148 -140911992 - HAL1 LINE L1 -1886 621 126 310 273 106 25 chrX 36062221 36062382 -140911758 - L2 LINE L2 -588 2726 2553 351 313 0 0 chrX 36062636 36062732 -140911408 - MIR SINE MIR -12 250 155 1801 197 27 32 chrX 36063395 36063771 -140910369 - MLT1A2 LTR MaLR 0 374 1 1179 338 165 27 chrX 36064702 36066013 -140908127 - L2 LINE L2 0 3272 1782 256 253 11 35 chrX 36066030 36066117 -140908023 + Charlie7 DNA MER1_type 601 685 -1927 875 275 164 30 chrX 36067422 36067818 -140906322 - MLT1J2 LTR MaLR -1 449 1 15804 38 2 1 chrX 36067859 36070930 -140903210 - L1PA5 LINE L1 0 6154 3081 268 180 60 60 chrX 36070930 36071030 -140903110 + L1MC/D LINE L1 5770 5869 -1939 21 57 0 0 chrX 36071312 36071347 -140902793 + AT_rich Low_complexity Low_complexity 1 35 0 281 312 10 85 chrX 36071386 36071585 -140902555 - L2 LINE L2 -954 2360 2177 389 219 0 0 chrX 36071749 36071822 -140902318 - MER5C DNA MER1_type -248 76 4 245 306 187 14 chrX 36071848 36072057 -140902083 - L2 LINE L2 -1156 2158 1914 253 258 0 0 chrX 36072112 36072174 -140901966 - MIR SINE MIR -15 247 186 2127 91 17 3 chrX 36072789 36073076 -140901064 + AluSg SINE Alu 1 291 -19 535 217 28 0 chrX 36073647 36073753 -140900387 + MIR3 SINE MIR 63 171 -37 962 186 0 0 chrX 36073877 36074049 -140900091 + MSTB1 LTR MaLR 261 432 0 805 191 71 38 chrX 36075414 36075597 -140898543 + MER5A DNA MER1_type 1 189 0 267 271 71 12 chrX 36075597 36075682 -140898458 + MIR SINE MIR 9 98 -164 186 133 0 0 chrX 36075771 36075801 -140898339 + (TG)n Simple_repeat Simple_repeat 2 31 0 461 233 158 8 chrX 36075807 36075940 -140898200 - MIR SINE MIR -92 170 18 286 207 161 0 chrX 36075945 36076032 -140898108 + MIR SINE MIR 101 201 -61 347 220 44 33 chrX 36076721 36076812 -140897328 - L2 LINE L2 0 3272 3181 1054 302 118 9 chrX 36076913 36077544 -140896596 - L2 LINE L2 -4 3309 2608 214 358 28 98 chrX 36078159 36078413 -140895727 - L2 LINE L2 -8 3264 3029 634 309 113 43 chrX 36078422 36078749 -140895391 - L2 LINE L2 0 3272 2923 399 301 27 27 chrX 36079414 36079600 -140894540 - L1ME3A LINE L1 -15 6155 5970 21 57 0 0 chrX 36079694 36079729 -140894411 + AT_rich Low_complexity Low_complexity 1 35 0 2003 236 75 2 chrX 36079756 36080299 -140893841 - L1ME3A LINE L1 -265 5905 5323 576 347 144 5 chrX 36080434 36080837 -140893303 - L2 LINE L2 -586 2728 2270 285 183 0 0 chrX 36080837 36080897 -140893243 + (TG)n Simple_repeat Simple_repeat 2 61 0 1303 141 28 14 chrX 36081025 36081238 -140892902 - MER20 DNA MER1_type 0 219 4 248 227 15 15 chrX 36081307 36081373 -140892767 + (TA)n Simple_repeat Simple_repeat 2 67 0 308 364 68 14 chrX 36081373 36081653 -140892487 - L2 LINE L2 -1089 2225 1931 233 279 121 24 chrX 36081804 36081969 -140892171 + L2 LINE L2 3128 3308 -5 203 214 24 0 chrX 36082247 36082289 -140891851 - L2 LINE L2 -15 3257 3215 333 267 199 0 chrX 36082664 36082795 -140891345 + MIR SINE MIR 51 207 -55 303 280 0 27 chrX 36083693 36083768 -140890372 - L2 LINE L2 -13 3300 3228 343 312 24 58 chrX 36085666 36085871 -140888269 - L3 LINE CR1 -608 969 772 218 207 241 0 chrX 36085870 36085928 -140888212 - L2 LINE L2 0 3272 3201 * 565 249 139 0 chrX 36086091 36086256 -140887884 + MIR SINE MIR 65 252 -10 569 289 99 0 chrX 36086574 36086726 -140887414 - MIR SINE MIR -92 170 4 621 322 157 15 chrX 36086755 36087162 -140886978 - L2 LINE L2 -932 2382 1918 6469 210 91 38 chrX 36087167 36088978 -140885162 + L1MD2 LINE L1 19 1732 -4808 2283 158 8 15 chrX 36088978 36089370 -140884770 + MLT1B LTR MaLR 1 389 -1 6469 210 91 38 chrX 36089370 36089477 -140884663 + L1MD2 LINE L1 1732 1832 -4708 1984 133 136 16 chrX 36089477 36089859 -140884281 + MSTA LTR MaLR 1 428 0 6469 210 91 38 chrX 36089859 36090561 -140883579 + L1MD2 LINE L1 1832 2495 -4045 1555 204 77 0 chrX 36090561 36090900 -140883240 + MLT1A1 LTR MaLR 1 365 0 6469 210 91 38 chrX 36090900 36091050 -140883090 + L1MD2 LINE L1 2495 2636 -3904 2241 140 34 10 chrX 36091050 36091435 -140882705 - L1PA16 LINE L1 -1 6165 5772 6469 210 91 38 chrX 36091435 36091576 -140882564 + L1MD2 LINE L1 2636 3229 -3311 1924 213 61 28 chrX 36091574 36092148 -140881992 + L1MD2 LINE L1 4190 4782 -1758 * 21 0 0 0 chrX 36092214 36092235 -140881905 + AT_rich Low_complexity Low_complexity 1 21 0 551 224 156 24 chrX 36092333 36092628 -140881512 + L1MD2 LINE L1 4752 5085 -1455 * 1774 212 26 6 chrX 36092599 36093199 -140880941 + L1MD2 LINE L1 6077 6740 -13 223 289 52 0 chrX 36093263 36093360 -140880780 - L2 LINE L2 -1662 1652 1551 6322 119 53 51 chrX 36093376 36094608 -140879532 - MER52C LTR ERV1 -44 1234 1 203 196 22 0 chrX 36094695 36094741 -140879399 + GA-rich Low_complexity Low_complexity 5 51 0 494 345 88 42 chrX 36094778 36095132 -140879008 - L2 LINE L2 -2363 951 582 525 233 8 8 chrX 36095345 36095465 -140878675 - MER94 DNA DNA -3 131 12 527 362 99 15 chrX 36095480 36095892 -140878248 - L3 LINE CR1 -947 630 184 866 309 16 82 chrX 36096017 36096396 -140877744 + L2 LINE L2 2916 3269 -3 201 258 155 31 chrX 36096930 36097027 -140877113 + MIR3 SINE MIR 93 201 -7 22 35 0 0 chrX 36097556 36097585 -140876555 + AT_rich Low_complexity Low_complexity 1 29 0 3669 181 18 19 chrX 36097585 36098374 -140875766 - L1MA9 LINE L1 -38 6274 5487 730 319 4 9 chrX 36100282 36100514 -140873626 + MIR SINE MIR 29 259 -3 239 299 205 16 chrX 36100566 36100693 -140873447 + MIR SINE MIR 95 245 -17 560 282 5 46 chrX 36101453 36101539 -140872601 + MIR SINE MIR 2 90 -172 2714 126 27 2 chrX 36101539 36101953 -140872187 + MSTA LTR MaLR 3 426 -2 560 282 5 46 chrX 36101953 36102061 -140872079 + MIR SINE MIR 90 188 -74 579 271 90 0 chrX 36102087 36102253 -140871887 - MIR SINE MIR -38 224 44 558 271 109 26 chrX 36102404 36102633 -140871507 - MIR SINE MIR 0 262 15 193 259 37 19 chrX 36103875 36103929 -140870211 - L2 LINE L2 -82 3190 3136 866 102 29 0 chrX 36104090 36104227 -140869913 + L1MA9 LINE L1 6172 6312 0 672 285 241 22 chrX 36104352 36104717 -140869423 - L2 LINE L2 -13 3300 2856 742 339 52 47 chrX 36104726 36104836 -140869304 - L2 LINE L2 -17 3296 3188 2609 96 74 20 chrX 36104836 36105242 -140868898 - MSTA LTR MaLR 0 428 1 742 339 52 47 chrX 36105242 36105635 -140868505 - L2 LINE L2 -125 3188 2798 1975 50 0 0 chrX 36105635 36105875 -140868265 + L1PA5 LINE L1 5902 6141 -13 742 339 52 47 chrX 36105875 36106308 -140867832 - L2 LINE L2 -515 2798 2355 426 39 0 0 chrX 36106334 36106386 -140867754 + (TG)n Simple_repeat Simple_repeat 1 52 0 188 367 102 20 chrX 36106484 36106631 -140867509 + L2 LINE L2 2813 2971 -343 214 162 0 0 chrX 36107370 36107407 -140866733 + CT-rich Low_complexity Low_complexity 2 38 0 506 243 27 61 chrX 36107903 36108051 -140866089 + L2 LINE L2 3171 3313 0 828 160 134 53 chrX 36109372 36109559 -140864581 + AluJo SINE Alu 86 287 -25 1040 241 63 101 chrX 36110149 36110616 -140863524 - MLT1G1 LTR MaLR -29 520 1 259 210 12 25 chrX 36110619 36110700 -140863440 + CT-rich Low_complexity Low_complexity 4 83 0 345 193 32 12 chrX 36110706 36110824 -140863316 - AluSp/q SINE Alu 0 303 225 578 294 89 28 chrX 36111008 36111290 -140862850 + L2 LINE L2 3012 3310 -3 253 309 168 7 chrX 36111773 36111922 -140862218 + L2 LINE L2 2554 2726 -588 256 133 0 150 chrX 36112064 36112124 -140862016 - L2 LINE L2 0 3313 3263 236 320 202 39 chrX 36112368 36112578 -140861562 - L2 LINE L2 -338 2976 2802 2443 139 31 21 chrX 36112578 36113002 -140861138 + MSTA LTR MaLR 1 428 0 236 320 202 39 chrX 36113002 36113147 -140860993 - L2 LINE L2 -512 2802 2563 267 320 96 47 chrX 36113235 36113579 -140860561 - L2 LINE L2 -1409 1905 1545 516 313 36 16 chrX 36113607 36113799 -140860341 + MIR SINE MIR 11 206 -56 528 253 44 38 chrX 36114388 36114486 -140859654 + MIR SINE MIR 48 149 -113 1799 180 65 31 chrX 36114486 36114869 -140859271 - MSTD LTR MaLR 0 396 1 528 253 44 38 chrX 36114869 36114928 -140859212 + MIR SINE MIR 149 206 -56 377 293 0 0 chrX 36114993 36115075 -140859065 - L2 LINE L2 0 3272 3191 270 189 82 74 chrX 36115313 36115435 -140858705 - LTR67 LTR ERVL -21 536 414 1334 353 63 32 chrX 36115446 36116483 -140857657 - L2 LINE L2 -493 2821 1753 356 309 8 0 chrX 36116561 36116687 -140857453 + L1M4b LINE L1 105 231 -6628 228 191 32 63 chrX 36117087 36117150 -140856990 + L1M4b LINE L1 363 423 -6436 2361 209 51 30 chrX 36117319 36117941 -140856199 + L1M4b LINE L1 977 1611 -5248 736 8 57 8 chrX 36118195 36118317 -140855823 + (TA)n Simple_repeat Simple_repeat 2 129 0 22 70 0 0 chrX 36122396 36122439 -140851701 + AT_rich Low_complexity Low_complexity 1 43 0 691 246 32 37 chrX 36122909 36123134 -140851006 - MIR SINE MIR -30 232 2 269 228 11 76 chrX 36123134 36123222 -140850918 - MIR SINE MIR -74 188 107 237 324 0 36 chrX 36124165 36124276 -140849864 + MIR SINE MIR 104 210 -52 198 103 0 0 chrX 36124872 36124901 -140849239 + (A)n Simple_repeat Simple_repeat 1 29 0 181 254 0 42 chrX 36124905 36124976 -140849164 + L2 LINE L2 2918 2985 -287 383 347 42 5 chrX 36125264 36125457 -140848683 + L2 LINE L2 2586 2785 -529 187 276 236 57 chrX 36125494 36125617 -140848523 + L2 LINE L2 2912 3056 -216 180 125 0 0 chrX 36126203 36126235 -140847905 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 611 214 0 71 chrX 36126790 36126930 -140847210 - MER91B DNA MER1_type -60 130 1 225 216 45 114 chrX 36127616 36127704 -140846436 - MER91A DNA MER1_type -2 194 113 223 341 12 24 chrX 36127815 36127900 -140846240 - MIR SINE MIR -96 166 83 180 111 0 0 chrX 36128910 36128937 -140845203 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 203 208 75 19 chrX 36129182 36129235 -140844905 + MIR3 SINE MIR 151 206 -2 1102 88 17 17 chrX 36131289 36131470 -140842670 + L1PA14 LINE L1 5979 6159 -2 6250 200 53 18 chrX 36131482 36133441 -140840699 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 36133476 36133552 -140840588 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 36133559 36133797 -140840343 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 36133803 36133968 -140840172 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 36133978 36134122 -140840018 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 36134156 36134458 -140839682 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 36134652 36134843 -140839297 - MIR SINE MIR -6 256 57 255 306 102 48 chrX 36134860 36135046 -140839094 + L2 LINE L2 3118 3313 0 10113 224 64 39 chrX 36135176 36140015 -140834125 - L1MCb LINE L1 -886 5678 600 800 273 39 58 chrX 36140014 36140612 -140833528 - L1M4b LINE L1 -4080 3058 2473 * 2455 244 24 19 chrX 36140736 36140966 -140833174 - L1M4b LINE L1 -4543 2416 2189 2404 97 0 0 chrX 36140966 36141266 -140832874 + AluSc SINE Alu 1 300 -9 2455 244 24 19 chrX 36141266 36141287 -140832853 - L1M4b LINE L1 -4770 2189 2170 216 0 0 0 chrX 36141287 36141311 -140832829 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2455 244 24 19 chrX 36141311 36141936 -140832204 - L1M4b LINE L1 -4789 2170 1541 488 211 56 7 chrX 36143100 36143242 -140830898 + L1ME4a LINE L1 5956 6104 -17 256 283 0 0 chrX 36143415 36143468 -140830672 + L2 LINE L2 3228 3280 -33 189 0 0 0 chrX 36144102 36144123 -140830017 + (T)n Simple_repeat Simple_repeat 1 21 0 327 130 0 0 chrX 36144574 36144628 -140829512 + (T)n Simple_repeat Simple_repeat 1 54 0 362 250 24 0 chrX 36144999 36145167 -140828973 + CT-rich Low_complexity Low_complexity 2 173 0 475 234 29 0 chrX 36145212 36145383 -140828757 + CT-rich Low_complexity Low_complexity 2 177 0 296 200 0 0 chrX 36145674 36145744 -140828396 + L1MA4 LINE L1 6226 6295 -5 30 0 0 0 chrX 36145744 36145774 -140828366 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chrX 36145991 36146030 -140828110 + AT_rich Low_complexity Low_complexity 1 39 0 956 207 34 0 chrX 36146482 36146719 -140827421 - L1MB7 LINE L1 -19 6165 5921 342 67 0 0 chrX 36147709 36147754 -140826386 + (T)n Simple_repeat Simple_repeat 1 45 0 216 0 0 0 chrX 36150570 36150594 -140823546 + (TG)n Simple_repeat Simple_repeat 1 24 0 2194 90 3 0 chrX 36351036 36351324 -140622816 - AluSp SINE Alu -24 289 1 2224 81 24 0 chrX 36351633 36351929 -140622211 - AluSc SINE Alu -6 303 1 2351 69 0 3 chrX 36351930 36352233 -140621907 - AluY SINE Alu -9 302 1 410 266 48 109 chrX 36352412 36352501 -140621639 + L1 LINE L1 4153 4246 -1900 2417 72 0 0 chrX 36352501 36352806 -140621334 + AluY SINE Alu 1 305 -6 410 266 48 109 chrX 36352806 36352850 -140621290 + L1 LINE L1 4246 4291 -1855 2181 91 0 7 chrX 36352850 36353148 -140620992 + AluSq SINE Alu 1 296 -17 410 266 48 109 chrX 36353148 36353325 -140620815 + L1 LINE L1 4291 4445 -1701 1726 211 112 19 chrX 36353374 36353859 -140620281 - MLT1F LTR MaLR -23 519 1 1919 105 8 0 chrX 36353884 36354150 -140619990 + AluSp SINE Alu 1 268 -45 353 219 37 12 chrX 36354281 36354363 -140619777 - MIR SINE MIR -73 189 106 207 0 0 0 chrX 36354398 36354421 -140619719 + (T)n Simple_repeat Simple_repeat 1 23 0 1585 183 42 0 chrX 36354436 36354721 -140619419 + AluJb SINE Alu 3 299 -13 2105 79 0 7 chrX 36354733 36355011 -140619129 + AluSq SINE Alu 11 286 -27 1583 177 37 0 chrX 36355048 36355319 -140618821 + AluJb SINE Alu 1 281 -31 689 136 0 95 chrX 36355334 36355481 -140618659 - FLAM_C SINE Alu 0 133 1 32 26 0 0 chrX 36355732 36355771 -140618369 + AT_rich Low_complexity Low_complexity 1 39 0 680 204 55 64 chrX 36355935 36356155 -140617985 + L1MC5 LINE L1 6823 7040 -921 977 198 42 58 chrX 36356162 36356248 -140617892 + L1MC5 LINE L1 7621 7707 -254 2306 78 0 7 chrX 36356248 36356554 -140617586 + AluSc SINE Alu 1 304 -5 977 198 42 58 chrX 36356554 36356780 -140617360 + L1MC5 LINE L1 7707 7928 -33 34 19 0 19 chrX 36356870 36356907 -140617233 + AT_rich Low_complexity Low_complexity 1 38 -13 1273 157 3 133 chrX 36356907 36357074 -140617066 - AluJo SINE Alu -12 290 186 245 87 0 22 chrX 36357074 36357120 -140617020 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 1273 157 3 133 chrX 36357120 36357284 -140616856 - AluJo SINE Alu -116 186 2 34 19 0 19 chrX 36357284 36357298 -140616842 + AT_rich Low_complexity Low_complexity 38 51 0 391 276 8 16 chrX 36357298 36357421 -140616719 - FLAM_C SINE Alu -9 124 3 819 155 185 54 chrX 36357529 36357692 -140616448 + L1M4 LINE L1 3107 3247 -2899 1905 140 0 3 chrX 36357692 36357977 -140616163 + AluJb SINE Alu 2 285 -27 819 155 185 54 chrX 36357977 36358157 -140615983 + L1M4 LINE L1 3247 3402 -2744 1988 118 17 7 chrX 36358157 36358454 -140615686 + AluSx SINE Alu 1 300 -12 819 155 185 54 chrX 36358454 36358525 -140615615 + L1M4 LINE L1 3402 3675 -2471 753 87 63 0 chrX 36358523 36358649 -140615491 + L1MA2 LINE L1 5998 6131 -173 * 857 155 68 19 chrX 36358649 36358666 -140615474 + AluSc SINE Alu 118 133 -176 2228 78 10 0 chrX 36358666 36358960 -140615180 + AluSp SINE Alu 1 297 -16 857 155 68 19 chrX 36358960 36359103 -140615037 + AluSc SINE Alu 133 286 -23 5174 136 58 21 chrX 36359103 36359462 -140614678 + L1MA9 LINE L1 5132 5476 -836 1954 147 0 0 chrX 36359462 36359761 -140614379 + AluSx SINE Alu 1 299 -13 5174 136 58 21 chrX 36359761 36359882 -140614258 + L1MA9 LINE L1 5476 5591 -721 2253 86 13 0 chrX 36359882 36360186 -140613954 + AluY SINE Alu 3 310 -1 5174 136 58 21 chrX 36360186 36360793 -140613347 + L1MA9 LINE L1 5591 6259 -53 1381 113 0 5 chrX 36360793 36360997 -140613143 - AluSg/x SINE Alu -14 298 96 2025 115 7 0 chrX 36361166 36361462 -140612678 + AluSx SINE Alu 1 298 -14 1258 172 55 65 chrX 36362214 36362530 -140611610 + AluJb SINE Alu 1 313 0 1197 183 4 32 chrX 36362617 36362863 -140611277 - AluJb SINE Alu -4 308 70 1956 80 0 11 chrX 36362964 36363227 -140610913 + AluSg SINE Alu 36 295 -15 1041 158 13 66 chrX 36363430 36363658 -140610482 - AluJo SINE Alu -8 304 89 531 88 0 0 chrX 36363851 36363919 -140610221 - AluJb SINE Alu -243 69 2 663 179 49 12 chrX 36363922 36364084 -140610056 + Charlie1 DNA MER1_type 2560 2727 -34 1860 141 0 43 chrX 36364286 36364422 -140609718 + AluJb SINE Alu 1 141 -161 1805 140 0 20 chrX 36364422 36364559 -140609581 + AluJb SINE Alu 1 139 -173 2093 97 10 0 chrX 36364559 36364683 -140609457 + AluY SINE Alu 1 122 -189 198 0 0 0 chrX 36364683 36364705 -140609435 + (CAA)n Simple_repeat Simple_repeat 3 24 0 2093 97 10 0 chrX 36364705 36364895 -140609245 + AluY SINE Alu 122 311 0 1805 140 0 20 chrX 36364895 36365057 -140609083 + AluJb SINE Alu 139 294 -18 1860 141 0 43 chrX 36365057 36365225 -140608915 + AluJb SINE Alu 141 292 -10 324 279 6 45 chrX 36365234 36365413 -140608727 - MER31-int LTR ERV1 -3065 1871 1700 324 0 0 0 chrX 36365534 36365570 -140608570 + (TC)n Simple_repeat Simple_repeat 2 37 0 489 103 0 74 chrX 36365571 36365814 -140608326 + (TA)n Simple_repeat Simple_repeat 1 224 0 2172 121 48 70 chrX 36365814 36366206 -140607934 - Tigger3b DNA MER2_type -2458 570 171 930 172 6 0 chrX 36366206 36366363 -140607777 - FRAM SINE Alu -4 162 5 2172 121 48 70 chrX 36366363 36366463 -140607677 - Tigger3b DNA MER2_type -2857 171 113 2055 106 0 3 chrX 36366463 36366745 -140607395 - AluSx SINE Alu -18 294 14 2172 121 48 70 chrX 36366745 36366855 -140607285 - Tigger3b DNA MER2_type -2915 113 2 838 108 0 8 chrX 36366858 36366978 -140607162 + L1MB1 LINE L1 5909 6027 -141 231 208 21 0 chrX 36367217 36367265 -140606875 + CT-rich Low_complexity Low_complexity 3 51 0 2095 95 0 3 chrX 36367267 36367552 -140606588 - AluSx SINE Alu -28 284 1 879 207 0 0 chrX 36367553 36367722 -140606418 - FRAM SINE Alu -6 170 2 26 0 0 0 chrX 36367728 36367754 -140606386 + AT_rich Low_complexity Low_complexity 1 26 0 1863 122 4 4 chrX 36367894 36368172 -140605968 - AluSx SINE Alu -34 278 1 1810 164 3 6 chrX 36368254 36368566 -140605574 - AluJb SINE Alu -1 311 1 215 375 0 14 chrX 36368671 36368743 -140605397 - MER5B DNA MER1_type -87 91 21 1577 149 50 21 chrX 36368922 36369204 -140604936 - AluJb SINE Alu -14 298 9 2074 102 20 3 chrX 36369335 36369628 -140604512 - AluSx SINE Alu -14 298 1 2140 115 0 13 chrX 36369631 36369936 -140604204 - AluSx SINE Alu -11 301 1 744 134 126 0 chrX 36369936 36370055 -140604085 - AluSq/x SINE Alu -176 136 3 2110 112 0 7 chrX 36370241 36370537 -140603603 + AluSx SINE Alu 1 294 -18 2285 100 0 3 chrX 36370537 36370847 -140603293 + AluSx SINE Alu 1 309 -3 2155 89 0 0 chrX 36371022 36371327 -140602813 + AluY SINE Alu 1 305 0 2332 76 0 10 chrX 36371354 36371656 -140602484 + AluSx SINE Alu 1 299 -13 1806 125 7 4 chrX 36371658 36371937 -140602203 + AluSx SINE Alu 1 280 -32 1181 78 0 0 chrX 36372063 36372216 -140601924 + AluSg SINE Alu 1 153 -157 1127 174 23 5 chrX 36372317 36372535 -140601605 - AluJo SINE Alu -89 223 2 2324 73 3 0 chrX 36372763 36373063 -140601077 + AluSg SINE Alu 1 301 -9 2014 113 0 3 chrX 36373821 36374121 -140600019 + AluSx SINE Alu 5 303 -9 2187 97 7 0 chrX 36374231 36374530 -140599610 + AluSx SINE Alu 1 301 -11 1136 102 0 6 chrX 36374536 36374693 -140599447 + AluSg/x SINE Alu 143 298 -14 2384 74 0 3 chrX 36375564 36375874 -140598266 + AluSc SINE Alu 1 309 0 2186 96 0 0 chrX 36376122 36376414 -140597726 + AluSx SINE Alu 1 292 -20 441 156 0 44 chrX 36377122 36377212 -140596928 + AluJ/FRAM SINE Alu 226 311 -1 2046 136 7 0 chrX 36377478 36377786 -140596354 - AluSx SINE Alu -2 310 1 751 169 0 37 chrX 36377937 36378073 -140596067 - FLAM_A SINE Alu -2 131 1 507 249 135 8 chrX 36378386 36378716 -140595424 - LTR16A LTR ERVL 0 450 17 1956 112 25 3 chrX 36378717 36379002 -140595138 - AluSx SINE Alu -21 291 1 293 280 15 61 chrX 36379045 36379177 -140594963 + MIR3 SINE MIR 7 132 -76 465 229 92 0 chrX 36379207 36379316 -140594824 - L2 LINE L2 0 3313 3195 388 233 0 70 chrX 36379919 36380048 -140594092 + MER31-int LTR ERV1 1159 1278 -3658 302 176 29 69 chrX 36380157 36380259 -140593881 + MER31-int LTR ERV1 1290 1387 -3549 1566 178 0 0 chrX 36380264 36380533 -140593607 + AluJb SINE Alu 5 273 -39 27 29 0 0 chrX 36380699 36380733 -140593407 + AT_rich Low_complexity Low_complexity 1 34 0 2251 56 0 3 chrX 36380810 36381119 -140593021 + AluY SINE Alu 1 308 0 373 319 53 47 chrX 36381339 36381508 -140592632 - L1ME LINE L1 -469 5652 5483 2096 131 0 6 chrX 36381589 36381903 -140592237 + AluJb SINE Alu 1 312 0 361 337 124 40 chrX 36381926 36382283 -140591857 - L1ME LINE L1 -3327 2819 2433 463 143 77 44 chrX 36382318 36382409 -140591731 - FRAM SINE Alu -54 122 29 881 201 0 44 chrX 36382514 36382718 -140591422 + AluJo SINE Alu 101 295 -17 1213 218 134 67 chrX 36382857 36383321 -140590819 + MLT1F LTR MaLR 1 495 -47 2071 113 3 7 chrX 36383371 36383673 -140590467 - AluSx SINE Alu -6 306 6 1257 101 0 48 chrX 36383773 36383961 -140590179 - AluY SINE Alu -131 180 2 1708 75 7 106 chrX 36384059 36384351 -140589789 - AluSx SINE Alu -49 263 1 231 143 0 0 chrX 36386567 36386609 -140587531 + Alu SINE Alu 258 299 -3 2031 113 7 0 chrX 36387218 36387509 -140586631 + AluSx SINE Alu 1 293 -19 349 284 20 0 chrX 36387797 36387899 -140586241 - L1M4 LINE L1 -2256 3890 3787 342 263 223 17 chrX 36387899 36388074 -140586066 - MIR SINE MIR -4 258 48 1158 76 0 0 chrX 36388100 36388257 -140585883 - L1PA8 LINE L1 0 6172 6016 203 250 36 36 chrX 36388465 36388549 -140585591 + L2 LINE L2 2810 2893 -421 846 240 20 80 chrX 36388656 36388691 -140585449 - MIR SINE MIR -21 241 205 186 43 0 0 chrX 36388691 36388714 -140585426 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2085 106 14 0 chrX 36388717 36389009 -140585131 - AluSx SINE Alu -16 296 1 846 240 20 80 chrX 36389009 36389219 -140584921 - MIR SINE MIR -59 203 7 1567 185 108 16 chrX 36389304 36389741 -140584399 + L2 LINE L2 2498 2974 -340 1685 237 125 6 chrX 36389752 36390224 -140583916 - REP3 LTR ERV -29 533 6 252 278 130 24 chrX 36390234 36390403 -140583737 + L2 LINE L2 2972 3158 -155 587 215 7 7 chrX 36390463 36390607 -140583533 + L1 LINE L1 2737 2880 -3266 403 133 0 17 chrX 36390607 36390667 -140583473 + AluJo SINE Alu 2 60 -252 1866 87 33 11 chrX 36390671 36390946 -140583194 - AluSx SINE Alu -10 302 22 1666 135 0 4 chrX 36390970 36391230 -140582910 + AluJo SINE Alu 53 311 -1 286 170 0 0 chrX 36391235 36391288 -140582852 + L1 LINE L1 3038 3090 -3056 1814 151 0 0 chrX 36391399 36391684 -140582456 - AluJb SINE Alu -27 285 1 581 192 120 0 chrX 36391686 36391811 -140582329 - MIR SINE MIR -114 148 9 1064 104 7 0 chrX 36391897 36392041 -140582099 + AluSg/x SINE Alu 133 277 -33 6971 116 22 24 chrX 36392062 36392295 -140581845 + L1MC1 LINE L1 5193 5425 -908 2347 87 3 0 chrX 36392295 36392607 -140581533 + AluSp SINE Alu 1 313 0 6971 116 22 24 chrX 36392607 36393021 -140581119 + L1MC1 LINE L1 5425 5838 -495 2256 72 28 0 chrX 36393021 36393312 -140580828 + AluSx SINE Alu 1 299 -13 6971 116 22 24 chrX 36393312 36393341 -140580799 + L1MC1 LINE L1 5838 5866 -467 2216 138 45 22 chrX 36393341 36393697 -140580443 + THE1B LTR MaLR 1 364 0 6971 116 22 24 chrX 36393697 36394153 -140579987 + L1MC1 LINE L1 5866 6333 0 35 24 0 0 chrX 36394914 36394956 -140579184 + AT_rich Low_complexity Low_complexity 1 42 0 1625 170 0 3 chrX 36394984 36395272 -140578868 - AluJo SINE Alu -17 295 9 941 129 0 7 chrX 36395276 36395416 -140578724 - AluJo SINE Alu -173 139 1 1221 113 0 6 chrX 36395883 36396060 -140578080 - AluSq SINE Alu -136 177 2 1841 112 64 13 chrX 36396063 36396189 -140577951 - L1 LINE L1 -1821 4325 4207 1677 121 80 24 chrX 36396189 36396510 -140577630 - AluSx SINE Alu 0 312 1 2140 68 11 0 chrX 36396518 36396843 -140577297 - AluY SINE Alu 0 328 1 1841 112 64 13 chrX 36396843 36397020 -140577120 - L1 LINE L1 -1945 4201 3996 31 58 0 0 chrX 36397238 36397290 -140576850 + AT_rich Low_complexity Low_complexity 1 52 0 466 278 141 96 chrX 36397989 36398921 -140575219 + L1MEd LINE L1 664 1646 -4483 2353 69 0 0 chrX 36400067 36400358 -140573782 + AluY SINE Alu 3 293 -18 366 23 0 0 chrX 36400492 36400535 -140573605 + (TA)n Simple_repeat Simple_repeat 1 43 0 2346 104 7 0 chrX 36400577 36400875 -140573265 - AluSx SINE Alu -12 300 1 758 192 7 7 chrX 36400887 36401033 -140573107 - AluSp/q SINE Alu -11 302 157 465 111 0 0 chrX 36401133 36401196 -140572944 + Alu SINE Alu 236 298 -14 263 227 80 27 chrX 36401196 36401271 -140572869 + MIR SINE MIR 184 262 0 2606 61 0 3 chrX 36401668 36401978 -140572162 + AluY SINE Alu 1 309 -2 2423 93 0 0 chrX 36402190 36402492 -140571648 - AluSq SINE Alu -11 302 1 231 256 141 0 chrX 36404269 36404347 -140569793 - L2 LINE L2 -3 3310 3222 305 331 113 0 chrX 36404410 36404552 -140569588 - L2 LINE L2 -632 2682 2525 284 146 0 0 chrX 36406069 36406110 -140568030 - 5S rRNA rRNA -80 41 1 269 297 72 36 chrX 36406162 36406273 -140567867 - MLT1D LTR MaLR -390 115 1 1112 98 14 0 chrX 36406378 36406521 -140567619 + AluSq/x SINE Alu 1 145 -167 1816 149 66 3 chrX 36406521 36406883 -140567257 - L1 LINE L1 -2137 4009 3625 1599 105 0 0 chrX 36406884 36407253 -140566887 + L1M1 LINE L1 5108 5476 -743 2294 99 3 0 chrX 36407254 36407548 -140566592 + AluSp SINE Alu 2 296 -17 2195 78 14 4 chrX 36407553 36407863 -140566277 + AluSx SINE Alu 1 313 0 2124 125 7 3 chrX 36408207 36408504 -140565636 + AluSx SINE Alu 7 304 -8 751 242 5 0 chrX 36408802 36408988 -140565152 - MER5A DNA MER1_type -2 187 1 333 0 0 0 chrX 36409274 36409311 -140564829 + (CAG)n Simple_repeat Simple_repeat 3 39 0 490 212 248 0 chrX 36409614 36409751 -140564389 + MIR SINE MIR 48 218 -44 2136 119 0 19 chrX 36409857 36410175 -140563965 - AluSx SINE Alu 0 312 1 2665 30 7 3 chrX 36410187 36410489 -140563651 - AluY SINE Alu -8 303 1 704 184 63 87 chrX 36410553 36410760 -140563380 + AluJo SINE Alu 2 203 -109 1643 95 9 0 chrX 36412860 36413070 -140561070 + AluSg/x SINE Alu 85 296 -16 1996 87 8 0 chrX 36413309 36413561 -140560579 + AluSx SINE Alu 42 295 -17 200 329 13 13 chrX 36413868 36413944 -140560196 + MIR SINE MIR 36 111 -151 291 279 54 9 chrX 36415294 36415372 -140558768 + MIR SINE MIR 104 190 -72 2261 107 10 0 chrX 36415372 36415671 -140558469 - AluSx SINE Alu -10 302 1 291 279 54 9 chrX 36415671 36415703 -140558437 + MIR SINE MIR 190 219 -43 344 185 228 0 chrX 36415933 36416025 -140558115 + MER46C DNA MER2_type 86 198 -140 397 204 41 0 chrX 36418045 36418143 -140555997 - U13 snRNA snRNA -2 102 1 591 122 0 0 chrX 36418502 36418584 -140555556 - 5S rRNA rRNA -39 82 1 2402 84 7 0 chrX 36419567 36419864 -140554276 - AluSx SINE Alu -13 299 1 1879 217 104 10 chrX 36420194 36420255 -140553885 - MLT1F LTR MaLR -8 534 480 2273 105 10 3 chrX 36420255 36420561 -140553579 + AluSx SINE Alu 1 308 -4 1879 217 104 10 chrX 36420561 36420987 -140553153 - MLT1F LTR MaLR -62 480 1 24 32 0 0 chrX 36421031 36421062 -140553078 + AT_rich Low_complexity Low_complexity 1 31 0 2067 102 3 20 chrX 36421076 36421370 -140552770 + AluSc SINE Alu 1 289 -20 1815 157 19 32 chrX 36421455 36421768 -140552372 + AluJb SINE Alu 1 309 -3 2525 47 0 50 chrX 36421910 36422229 -140551911 + AluY SINE Alu 1 303 -8 1340 70 0 59 chrX 36422229 36422415 -140551725 + AluY SINE Alu 133 307 -4 2147 124 14 0 chrX 36422487 36422777 -140551363 + AluSx SINE Alu 1 294 -18 2325 104 3 16 chrX 36422892 36423199 -140550941 + AluSx SINE Alu 1 303 -9 1043 91 0 8 chrX 36423201 36423333 -140550807 + AluSq/x SINE Alu 3 133 -179 2105 93 50 0 chrX 36423343 36423623 -140550517 + AluSx SINE Alu 5 298 -14 780 282 103 58 chrX 36423623 36424245 -140549895 + L1M4 LINE L1 3200 3860 -2286 2365 106 0 0 chrX 36424245 36424548 -140549592 + AluSg SINE Alu 1 303 -7 780 282 103 58 chrX 36424548 36424645 -140549495 + L1M4 LINE L1 3860 3951 -2195 895 172 0 0 chrX 36424655 36424789 -140549351 + FLAM_C SINE Alu 1 134 -9 2232 53 45 0 chrX 36424974 36425239 -140548901 + AluY SINE Alu 1 277 -34 205 182 0 0 chrX 36426467 36426500 -140547640 + (TAG)n Simple_repeat Simple_repeat 2 34 0 625 228 28 7 chrX 36426505 36426650 -140547490 - MIR SINE MIR -12 250 103 183 205 0 0 chrX 36426673 36426712 -140547428 + CT-rich Low_complexity Low_complexity 2 40 0 520 297 67 0 chrX 36426768 36426933 -140547207 + MER5B DNA MER1_type 3 178 0 1787 168 17 17 chrX 36427181 36427478 -140546662 - AluJo SINE Alu -15 297 1 2380 105 0 0 chrX 36427526 36427832 -140546308 + AluSx SINE Alu 1 306 -6 1198 107 18 24 chrX 36428148 36428316 -140545824 + AluJb SINE Alu 133 299 -13 252 114 0 0 chrX 36428732 36428767 -140545373 - U2 snRNA snRNA -153 35 1 248 231 0 0 chrX 36429390 36429442 -140544698 - L2 LINE L2 0 3272 3221 963 239 158 25 chrX 36429459 36429732 -140544408 - L2 LINE L2 0 3313 3078 2235 113 7 0 chrX 36429732 36430024 -140544116 - AluJo SINE Alu -18 294 1 963 239 158 25 chrX 36430024 36430423 -140543717 - L2 LINE L2 -235 3078 2563 2648 170 8 82 chrX 36431201 36431507 -140542633 - MER68 LTR ERV1 0 562 235 2032 124 0 29 chrX 36431507 36431814 -140542326 - AluSx SINE Alu 0 312 15 2648 170 8 82 chrX 36431814 36431927 -140542213 - MER68 LTR ERV1 -327 235 115 2453 76 0 10 chrX 36431927 36432230 -140541910 - AluSc SINE Alu -9 300 1 2648 170 8 82 chrX 36432230 36432272 -140541868 - MER68 LTR ERV1 -447 115 71 2014 138 33 7 chrX 36432272 36432576 -140541564 - AluJb SINE Alu 0 312 1 2648 170 8 82 chrX 36432576 36432719 -140541421 - MER68 LTR ERV1 -491 71 1 239 250 68 57 chrX 36433090 36433178 -140540962 + MIR SINE MIR 137 225 -37 22 0 0 0 chrX 36433179 36433201 -140540939 + AT_rich Low_complexity Low_complexity 1 22 0 228 286 143 0 chrX 36433483 36433567 -140540573 + MIR SINE MIR 21 116 -92 2252 103 0 13 chrX 36433585 36433887 -140540253 - AluSx SINE Alu -14 298 1 2398 168 71 37 chrX 36433945 36434492 -140539648 + MER74B LTR ERVL 57 622 0 217 152 22 22 chrX 36434648 36434694 -140539446 + MIR3 SINE MIR 157 202 -6 2294 121 0 3 chrX 36434707 36435014 -140539126 + AluSx SINE Alu 1 306 -6 1411 134 18 0 chrX 36435034 36435257 -140538883 + MSTC LTR MaLR 202 428 0 1944 180 53 13 chrX 36435300 36435694 -140538446 - MLT-int LTR MaLR -11 1724 1315 5963 43 31 4 chrX 36435742 36436494 -140537646 + LTR17 LTR ERV1 1 772 -8 2470 92 0 0 chrX 36436643 36436946 -140537194 + AluY SINE Alu 1 303 -8 461 267 0 0 chrX 36436960 36437065 -140537075 - MLT-int LTR MaLR -952 783 679 2459 94 0 22 chrX 36437147 36437466 -140536674 - AluSx SINE Alu 0 312 1 2893 165 14 95 chrX 36437515 36438168 -140535972 - MSTD-int LTR MaLR -632 739 34 2307 104 0 38 chrX 36438168 36438486 -140535654 - AluSg SINE Alu -2 308 3 2893 165 14 95 chrX 36438486 36438526 -140535614 - MSTD-int LTR MaLR -1337 34 99 1469 176 104 50 chrX 36438526 36438596 -140535544 - MSTD LTR MaLR 0 396 331 2305 118 0 0 chrX 36438596 36438901 -140535239 + AluSx SINE Alu 1 305 -7 1469 176 104 50 chrX 36438901 36439206 -140534934 - MSTD LTR MaLR -65 331 1 2893 165 14 95 chrX 36439206 36439299 -140534841 - MSTD-int LTR MaLR -1271 100 1 1539 193 36 30 chrX 36439299 36439507 -140534633 - MLT1A1 LTR MaLR 0 365 151 2263 107 0 0 chrX 36439507 36439822 -140534318 - AluSx SINE Alu 0 315 1 1539 193 36 30 chrX 36439822 36439974 -140534166 - MLT1A1 LTR MaLR -214 151 1 2335 71 68 10 chrX 36440055 36440366 -140533774 - LTR5 LTR ERVK -639 330 2 5839 73 17 76 chrX 36440367 36441779 -140532361 - SVA Other Other -518 936 53 1116 71 0 0 chrX 36441779 36441947 -140532193 + (GGGAGA)n Simple_repeat Simple_repeat 3 170 0 246 32 0 0 chrX 36442035 36442066 -140532074 + (TC)n Simple_repeat Simple_repeat 2 32 0 1992 156 0 3 chrX 36442066 36442349 -140531791 - AluJb SINE Alu -30 282 1 199 262 48 24 chrX 36442425 36442509 -140531631 - L2 LINE L2 -949 2365 2280 395 306 18 31 chrX 36442510 36442732 -140531408 - L1M4 LINE L1 -3818 2328 2110 24 53 0 0 chrX 36442951 36442989 -140531151 + AT_rich Low_complexity Low_complexity 1 38 0 1554 179 41 21 chrX 36442990 36443280 -140530860 + AluJo SINE Alu 1 296 -16 22 0 0 0 chrX 36443311 36443333 -140530807 + AT_rich Low_complexity Low_complexity 1 22 0 736 161 0 0 chrX 36443343 36443461 -140530679 + FLAM_A SINE Alu 11 128 -14 237 108 0 0 chrX 36443461 36443498 -140530642 + (TA)n Simple_repeat Simple_repeat 2 38 0 2565 61 0 0 chrX 36443548 36443843 -140530297 + AluY SINE Alu 1 295 -16 2405 99 0 3 chrX 36443900 36444204 -140529936 + AluY SINE Alu 1 303 -8 2015 199 88 61 chrX 36444249 36444826 -140529314 + MLT1E LTR MaLR 1 593 0 217 188 62 0 chrX 36444918 36444966 -140529174 + MIR SINE MIR 89 139 -123 192 77 0 0 chrX 36444983 36445009 -140529131 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 2162 125 7 0 chrX 36445009 36445297 -140528843 - AluSx SINE Alu -2 310 21 33 0 0 0 chrX 36446069 36446102 -140528038 + AT_rich Low_complexity Low_complexity 1 33 0 1791 138 65 0 chrX 36446126 36446402 -140527738 - AluJb SINE Alu -18 294 1 914 81 0 0 chrX 36446508 36446619 -140527521 - AluSp/q SINE Alu -12 301 191 2394 81 0 10 chrX 36446930 36447258 -140526882 + AluSx SINE Alu 1 312 0 2272 117 0 10 chrX 36447607 36447914 -140526226 - AluSx SINE Alu -8 304 1 1271 175 14 14 chrX 36448049 36448272 -140525868 + AluJo SINE Alu 84 306 -6 2152 117 9 28 chrX 36448447 36448764 -140525376 + AluSx SINE Alu 1 311 -1 1423 210 103 0 chrX 36448889 36449218 -140524922 - MLT1A1 LTR MaLR -2 363 1 202 231 0 0 chrX 36449443 36449482 -140524658 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 2106 137 3 0 chrX 36449488 36449780 -140524360 - AluJb SINE Alu -19 293 1 306 292 8 23 chrX 36449906 36450036 -140524104 - L2 LINE L2 -174 3098 2971 280 215 102 161 chrX 36450090 36450173 -140523967 + MIR SINE MIR 77 163 -99 2429 90 0 3 chrX 36450173 36450484 -140523656 + AluSg SINE Alu 1 310 0 280 215 102 161 chrX 36450484 36450586 -140523554 + MIR SINE MIR 163 251 -11 231 200 0 0 chrX 36450552 36450592 -140523548 + L2 LINE L2 3263 3302 -11 * 847 104 0 0 chrX 36451001 36451107 -140523033 - FLAM_C SINE Alu -25 118 13 235 298 154 0 chrX 36451433 36451537 -140522603 + L2 LINE L2 3141 3260 -12 350 93 0 0 chrX 36451537 36451591 -140522549 + Alu SINE Alu 249 302 0 2297 94 0 42 chrX 36452142 36452306 -140521834 - AluSg SINE Alu -15 295 148 2534 58 0 0 chrX 36452306 36452597 -140521543 - AluY SINE Alu -20 291 1 2297 94 0 42 chrX 36452597 36452740 -140521400 - AluSg SINE Alu -162 148 1 1762 173 0 27 chrX 36452744 36453045 -140521095 - AluJo SINE Alu -19 293 1 2307 108 0 3 chrX 36453075 36453370 -140520770 + AluSc SINE Alu 1 294 -15 1684 176 11 4 chrX 36453372 36453651 -140520489 - AluJo SINE Alu -30 282 2 2274 114 0 3 chrX 36453880 36454177 -140519963 + AluSq SINE Alu 1 296 -17 2432 93 3 0 chrX 36454178 36454478 -140519662 + AluSx SINE Alu 1 301 -11 1283 155 54 32 chrX 36454653 36454930 -140519210 - MLT1B LTR MaLR -107 283 1 1707 95 63 0 chrX 36455183 36455405 -140518735 - AluSq SINE Alu -77 236 1 2237 97 0 0 chrX 36455405 36455684 -140518456 - AluSq SINE Alu -34 279 1 2293 103 0 0 chrX 36456627 36456927 -140517213 - AluSx SINE Alu -12 300 1 499 314 92 21 chrX 36458624 36458863 -140515277 - MIR SINE MIR -1 261 6 280 281 85 0 chrX 36459115 36459197 -140514943 - L2 LINE L2 -14 3299 3211 392 131 24 24 chrX 36459316 36459400 -140514740 + MER20B DNA MER1_type 694 777 -6 26 0 0 0 chrX 36460037 36460063 -140514077 + AT_rich Low_complexity Low_complexity 1 26 0 1853 150 33 17 chrX 36460240 36460540 -140513600 - AluJo SINE Alu -7 305 1 216 0 0 0 chrX 36460552 36460576 -140513564 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1953 151 0 0 chrX 36460730 36461014 -140513126 + AluJb SINE Alu 12 295 -17 1035 90 96 0 chrX 36461021 36461188 -140512952 + MER41B LTR ERV1 453 635 0 626 81 23 0 chrX 36461188 36461274 -140512866 + MER41B-int LTR ERV1 1 88 -5858 548 125 0 0 chrX 36461269 36461349 -140512791 + MER41B-int LTR ERV1 5408 5487 -459 * 1119 106 116 0 chrX 36461344 36461533 -140512607 + MER41B-int LTR ERV1 5729 5939 -7 3637 98 18 18 chrX 36461539 36462088 -140512052 + MER41B LTR ERV1 1 549 -86 183 42 0 0 chrX 36462090 36462114 -140512026 + (CAA)n Simple_repeat Simple_repeat 2 25 0 656 230 43 72 chrX 36462283 36462387 -140511753 + MIR SINE MIR 60 157 -105 2462 80 0 3 chrX 36462387 36462686 -140511454 - AluSg SINE Alu -12 298 1 656 230 43 72 chrX 36462686 36462790 -140511350 + MIR SINE MIR 157 262 0 369 350 77 9 chrX 36463276 36463553 -140510587 + L1ME3 LINE L1 5557 5849 -317 2519 79 0 7 chrX 36463830 36464133 -140510007 + AluSc SINE Alu 1 301 -8 2030 148 0 16 chrX 36464286 36464603 -140509537 - AluSx SINE Alu 0 312 1 197 196 20 0 chrX 36465244 36465295 -140508845 + CT-rich Low_complexity Low_complexity 3 54 0 265 284 6 11 chrX 36467379 36467555 -140506585 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 282 236 14 7 chrX 36467600 36467740 -140506400 + (TGAA)n Simple_repeat Simple_repeat 1 141 0 241 212 30 0 chrX 36467761 36467827 -140506313 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 192 261 0 0 chrX 36468254 36468319 -140505821 + (TGGG)n Simple_repeat Simple_repeat 3 67 0 876 158 63 6 chrX 36468319 36468477 -140505663 + MER96 DNA MER1_type? 1 167 -8 200 342 13 13 chrX 36468482 36468558 -140505582 + (TGGG)n Simple_repeat Simple_repeat 1 76 0 422 267 6 0 chrX 36468567 36468739 -140505401 + (TGGA)n Simple_repeat Simple_repeat 1 173 0 238 279 14 14 chrX 36468765 36468915 -140505225 + (TGGA)n Simple_repeat Simple_repeat 1 150 0 322 335 39 7 chrX 36468928 36469083 -140505057 + (TGGA)n Simple_repeat Simple_repeat 2 161 0 199 122 0 33 chrX 36469798 36469841 -140504299 - MIR SINE MIR -63 145 104 204 125 0 0 chrX 36470125 36470157 -140503983 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2002 138 13 20 chrX 36470931 36471229 -140502911 + AluJb SINE Alu 1 296 -16 1794 125 0 77 chrX 36471354 36471667 -140502473 - AluJb SINE Alu -23 289 1 1332 84 12 0 chrX 36471796 36471963 -140502177 - AluSg/x SINE Alu -14 296 128 265 256 0 26 chrX 36472704 36472782 -140501358 + (TTCA)n Simple_repeat Simple_repeat 1 76 0 817 261 78 50 chrX 36472830 36473187 -140500953 - L2 LINE L2 -40 3273 2907 27 0 0 0 chrX 36473203 36473230 -140500910 + AT_rich Low_complexity Low_complexity 1 27 0 2387 84 0 7 chrX 36473235 36473531 -140500609 + AluSx SINE Alu 1 294 -18 219 281 49 0 chrX 36473748 36473820 -140500320 + MIR SINE MIR 87 169 -39 2295 100 3 0 chrX 36474334 36474624 -140499516 + AluY SINE Alu 1 291 -20 1927 175 11 3 chrX 36474624 36474973 -140499167 + L1PB4 LINE L1 5777 6128 -28 459 258 32 24 chrX 36474973 36475159 -140498981 + AluSp SINE Alu 1 182 -121 456 183 3 34 chrX 36475159 36475239 -140498901 + L1PB4 LINE L1 6049 6130 -173 2242 108 0 10 chrX 36475239 36475534 -140498606 + AluSx SINE Alu 1 292 -20 456 183 3 34 chrX 36475534 36475566 -140498574 + L1PB4 LINE L1 6130 6278 -25 316 291 47 16 chrX 36475578 36475705 -140498435 + L1ME3A LINE L1 6027 6157 -13 456 248 8 17 chrX 36475947 36476064 -140498076 - MIR SINE MIR -146 116 1 215 194 0 0 chrX 36477758 36477794 -140496346 + (CCG)n Simple_repeat Simple_repeat 2 37 0 245 164 229 0 chrX 36478849 36478910 -140495230 - Charlie2a DNA MER1_type -21 2841 2767 882 193 96 20 chrX 36478918 36479167 -140494973 - Charlie2a DNA MER1_type -1855 1007 740 630 216 118 118 chrX 36479199 36479323 -140494817 - Charlie2a DNA MER1_type -2441 421 298 1131 216 33 39 chrX 36479323 36479657 -140494483 + MER46C DNA MER2_type 5 336 -2 630 216 118 118 chrX 36479657 36479897 -140494243 - Charlie2a DNA MER1_type -2563 299 57 204 243 68 0 chrX 36480366 36480440 -140493700 - MIR SINE MIR -65 197 119 232 255 191 0 chrX 36480552 36480646 -140493494 - MIR SINE MIR -3 259 148 645 249 102 20 chrX 36480660 36480857 -140493283 + MIR SINE MIR 7 219 -43 666 211 101 26 chrX 36480880 36481107 -140493033 - L2 LINE L2 -727 2587 2344 234 304 10 29 chrX 36481073 36481175 -140492965 - MIR SINE MIR -149 113 14 * 331 320 47 52 chrX 36482177 36482349 -140491791 + MER91A DNA MER1_type 1 171 -25 1058 276 89 5 chrX 36482495 36482865 -140491275 - MLT1J2 LTR MaLR 0 450 50 513 277 45 7 chrX 36482961 36483116 -140491024 - MER20B DNA MER1_type -594 189 29 804 224 104 58 chrX 36484135 36484376 -140489764 + MIR SINE MIR 1 252 -10 649 268 77 10 chrX 36484399 36484608 -140489532 + MER46C DNA MER2_type 31 253 -85 450 172 33 73 chrX 36484776 36484927 -140489213 + MER104 DNA Tc2 4 148 -32 463 257 0 66 chrX 36484985 36485137 -140489003 - MIR SINE MIR -51 211 70 235 281 105 26 chrX 36485204 36485318 -140488822 - MIR SINE MIR -67 141 19 396 158 0 0 chrX 36488564 36488640 -140485500 + CT-rich Low_complexity Low_complexity 4 79 0 196 270 142 75 chrX 36490010 36490236 -140483904 + L2 LINE L2 3031 3271 -1 1841 142 0 46 chrX 36490444 36490747 -140483393 + AluJb SINE Alu 1 289 -23 233 343 0 0 chrX 36490752 36490892 -140483248 + (ACTTG)n Simple_repeat Simple_repeat 4 143 0 * 347 316 12 6 chrX 36490869 36491037 -140483103 + (GACTG)n Simple_repeat Simple_repeat 2 170 0 330 244 30 52 chrX 36491424 36491559 -140482581 + MER113 DNA MER1_type? 160 291 -230 211 79 26 26 chrX 36491604 36491642 -140482498 - L2 LINE L2 -9 3304 3267 252 0 0 0 chrX 36494792 36494820 -140479320 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 241 0 0 chrX 36496522 36496580 -140477560 - MLT1D LTR MaLR -260 245 188 881 212 15 10 chrX 36496611 36496809 -140477331 - MLT1D LTR MaLR -293 212 14 2357 110 0 0 chrX 36497771 36498072 -140476068 + AluSx SINE Alu 1 301 -11 984 240 55 88 chrX 36498514 36498592 -140475548 - MLT1D LTR MaLR -2 503 424 2170 126 10 0 chrX 36498592 36498894 -140475246 + AluSx SINE Alu 1 305 -7 984 240 55 88 chrX 36498894 36498997 -140475143 - MLT1D LTR MaLR -81 424 319 2485 94 0 0 chrX 36498997 36499306 -140474834 - AluSc SINE Alu 0 309 1 984 240 55 88 chrX 36499306 36499778 -140474362 - MLT1D LTR MaLR -186 319 3 411 21 0 0 chrX 36500095 36500143 -140473997 + (CA)n Simple_repeat Simple_repeat 2 49 0 1123 159 34 29 chrX 36500865 36501073 -140473067 - MER2 DNA MER2_type -135 210 2 2127 172 18 36 chrX 36502692 36503139 -140471001 - MLT1D LTR MaLR -22 483 45 211 148 57 23 chrX 36503799 36503887 -140470253 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 302 188 73 18 chrX 36503913 36504078 -140470062 + (TA)n Simple_repeat Simple_repeat 2 175 0 2323 84 0 3 chrX 36504314 36504626 -140469514 + AluSx SINE Alu 1 311 0 1082 215 22 54 chrX 36504705 36505021 -140469119 - MLT1D LTR MaLR -1 504 199 398 123 0 0 chrX 36505264 36505329 -140468811 - MLT1D LTR MaLR -360 145 81 2294 94 0 14 chrX 36505337 36505634 -140468506 - AluSx SINE Alu -19 293 1 31 44 0 0 chrX 36505645 36505690 -140468450 + AT_rich Low_complexity Low_complexity 1 45 0 722 110 0 0 chrX 36505691 36505791 -140468349 - U6 snRNA snRNA -7 100 1 2073 125 10 3 chrX 36505817 36506128 -140468012 - L1PB4 LINE L1 -7 6149 5837 339 161 48 0 chrX 36506132 36506194 -140467946 - MLT1D LTR MaLR -543 83 19 2041 125 10 7 chrX 36506496 36506791 -140467349 - AluJb SINE Alu -16 296 1 2350 101 0 0 chrX 36507545 36507842 -140466298 + AluSx SINE Alu 1 297 -15 1988 122 0 24 chrX 36508273 36508585 -140465555 + AluSx SINE Alu 1 305 0 1789 126 4 4 chrX 36509443 36509712 -140464428 + MER66B LTR ERV1 215 483 -3 251 180 0 0 chrX 36511561 36511611 -140462529 - MLT1F1 LTR MaLR -2 565 516 337 195 81 11 chrX 36511613 36511700 -140462440 - MLT1F1 LTR MaLR -313 254 162 430 134 50 42 chrX 36511700 36511819 -140462321 - L1M4 LINE L1 -3141 3005 2886 1503 55 45 0 chrX 36512641 36512843 -140461297 - MER30 DNA MER1_type 0 230 20 1794 107 133 7 chrX 36512943 36513213 -140460927 - AluSg1 SINE Alu -5 304 1 1013 144 8 132 chrX 36513480 36513612 -140460528 + MER20 DNA MER1_type 1 148 -71 2120 225 76 45 chrX 36513612 36514015 -140460125 - MER90 LTR ERV1 0 575 186 2457 53 0 0 chrX 36514015 36514338 -140459802 - AluY SINE Alu 0 323 1 1961 151 3 7 chrX 36514340 36514638 -140459502 - AluJb SINE Alu -15 297 1 2120 225 76 45 chrX 36514638 36514785 -140459355 - MER90 LTR ERV1 -389 186 4 1013 144 8 132 chrX 36514785 36514814 -140459326 + MER20 DNA MER1_type 148 179 -40 2837 139 17 9 chrX 36514814 36515275 -140458865 + MLT1C LTR MaLR 3 467 0 1013 144 8 132 chrX 36515275 36515362 -140458778 + MER20 DNA MER1_type 179 219 0 417 185 104 22 chrX 36515730 36515865 -140458275 + L1MC4a LINE L1 7663 7808 0 2099 145 3 0 chrX 36515873 36516177 -140457963 + AluJb SINE Alu 1 305 -7 1658 153 44 22 chrX 36516230 36516526 -140457614 + AluJb SINE Alu 1 302 0 1726 151 6 66 chrX 36516635 36516766 -140457374 + AluJb SINE Alu 1 138 -174 1422 152 124 12 chrX 36516766 36517023 -140457117 - AluSg1 SINE Alu -23 286 1 1726 151 6 66 chrX 36517023 36517208 -140456932 + AluJb SINE Alu 138 298 -14 1405 164 0 5 chrX 36517209 36517428 -140456712 + AluJb SINE Alu 88 305 -7 282 148 0 0 chrX 36517529 36517583 -140456557 + (A)n Simple_repeat Simple_repeat 1 54 0 331 250 70 62 chrX 36519282 36519410 -140454730 + L2 LINE L2 3183 3311 -2 262 231 0 31 chrX 36519412 36519477 -140454663 + L1ME LINE L1 5615 5677 -444 1876 129 14 4 chrX 36519988 36520268 -140453872 - AluJb SINE Alu -25 287 5 1088 220 40 47 chrX 36520486 36520592 -140453548 + L1M4 LINE L1 2770 2875 -3271 2319 97 3 3 chrX 36520592 36520891 -140453249 - AluSq SINE Alu -14 299 1 1088 220 40 47 chrX 36520891 36521148 -140452992 + L1M4 LINE L1 2875 3132 -3014 1823 140 55 10 chrX 36521148 36521440 -140452700 + AluSq SINE Alu 1 305 -8 1198 173 12 119 chrX 36521444 36521780 -140452360 + AluJo SINE Alu 2 301 -1 1088 220 40 47 chrX 36521780 36521832 -140452308 + L1M4 LINE L1 3135 3188 -2958 2091 109 4 0 chrX 36521836 36522111 -140452029 + AluSx SINE Alu 1 276 -36 1903 150 14 3 chrX 36522333 36522627 -140451513 - AluJb SINE Alu -15 297 1 1607 121 25 8 chrX 36523482 36523722 -140450418 + AluSx SINE Alu 1 244 -68 752 176 15 15 chrX 36523873 36524009 -140450131 - AluJb SINE Alu -6 306 171 1461 119 29 0 chrX 36524193 36524403 -140449737 - AluSq SINE Alu -2 311 96 2237 108 16 0 chrX 36524403 36524709 -140449431 + AluSx SINE Alu 1 311 -1 942 129 0 0 chrX 36524719 36524843 -140449297 + FLAM_C SINE Alu 1 124 -19 27 29 0 0 chrX 36524843 36524877 -140449263 + AT_rich Low_complexity Low_complexity 1 34 0 573 181 11 0 chrX 36525023 36525117 -140449023 + FRAM SINE Alu 60 154 -22 23 0 0 0 chrX 36525129 36525152 -140448988 + AT_rich Low_complexity Low_complexity 1 23 0 2313 95 0 10 chrX 36525157 36525452 -140448688 - AluSg SINE Alu -18 292 1 222 303 13 13 chrX 36525680 36525756 -140448384 + MIR SINE MIR 77 152 -110 28 29 0 0 chrX 36525862 36525897 -140448243 + AT_rich Low_complexity Low_complexity 1 35 0 954 138 86 13 chrX 36525897 36526049 -140448091 - AluSx SINE Alu -149 163 1 2259 160 21 18 chrX 36526090 36526478 -140447662 - MLT1B LTR MaLR -1 389 1 319 261 201 27 chrX 36526671 36526683 -140447457 - HAL1b LINE L1 -28 1320 1311 1980 121 13 26 chrX 36526683 36526852 -140447288 - AluSx SINE Alu -9 303 138 2280 101 0 13 chrX 36526852 36527158 -140446982 - AluSx SINE Alu -10 302 1 1980 121 13 26 chrX 36527158 36527295 -140446845 - AluSx SINE Alu -174 138 1 319 261 201 27 chrX 36527295 36527466 -140446674 - HAL1b LINE L1 -37 1311 1105 1653 167 63 97 chrX 36527621 36527692 -140446448 - MLT1D LTR MaLR -13 492 420 2026 138 0 3 chrX 36527692 36527988 -140446152 - AluJb SINE Alu -13 299 5 1653 167 63 97 chrX 36527988 36528330 -140445810 - MLT1D LTR MaLR -85 420 94 2474 101 0 0 chrX 36528330 36528638 -140445502 - AluSx SINE Alu -4 308 1 1653 167 63 97 chrX 36528638 36528685 -140445455 - MLT1D LTR MaLR -411 94 47 241 296 14 0 chrX 36529158 36529229 -140444911 - MIR3 SINE MIR -21 187 116 2224 116 0 0 chrX 36529373 36529665 -140444475 + AluSq SINE Alu 1 292 -21 812 201 0 19 chrX 36529678 36529832 -140444308 + FRAM SINE Alu 1 151 -15 419 269 31 25 chrX 36529910 36530070 -140444070 - MIR3 SINE MIR -30 178 18 2262 98 0 26 chrX 36530181 36530488 -140443652 - AluSx SINE Alu -13 299 1 215 188 50 100 chrX 36530551 36530631 -140443509 - MIR SINE MIR -76 186 111 5213 138 13 24 chrX 36530724 36531142 -140442998 + L1MB3 LINE L1 5193 5614 -569 2201 139 0 0 chrX 36531142 36531445 -140442695 + AluJb SINE Alu 1 303 -9 5213 138 13 24 chrX 36531445 36531801 -140442339 + L1MB3 LINE L1 5614 5972 -211 1832 147 0 58 chrX 36531801 36531947 -140442193 + AluJo SINE Alu 1 154 -158 2378 73 0 13 chrX 36531947 36532247 -140441893 + AluY SINE Alu 1 296 -15 2438 92 0 0 chrX 36532250 36532553 -140441587 + AluSg SINE Alu 1 303 -7 1832 147 0 58 chrX 36532553 36532715 -140441425 + AluJo SINE Alu 156 295 -17 5213 138 13 24 chrX 36532715 36532934 -140441206 + L1MB3 LINE L1 5972 6176 -7 440 247 40 52 chrX 36533604 36533778 -140440362 - MLT1J2 LTR MaLR -23 427 256 259 278 62 0 chrX 36533837 36533934 -140440206 - MLT1J LTR MaLR -323 188 86 251 325 44 16 chrX 36533993 36534154 -140439986 - MIR SINE MIR -62 146 10 586 212 0 9 chrX 36536766 36536879 -140437261 + L2 LINE L2 3201 3312 -1 2218 113 19 7 chrX 36536902 36537211 -140436929 - AluSq SINE Alu 0 313 1 7526 115 70 101 chrX 36537405 36537656 -140436484 + ERVL LTR ERVL 2313 2570 -3194 183 284 45 15 chrX 36537656 36537723 -140436417 - L3 LINE CR1 -1054 523 455 7526 115 70 101 chrX 36537723 36538033 -140436107 + ERVL LTR ERVL 2570 2888 -2876 2511 85 3 0 chrX 36538033 36538338 -140435802 - AluSg SINE Alu -4 306 1 7526 115 70 101 chrX 36538338 36538691 -140435449 + ERVL LTR ERVL 2888 3251 -2513 1719 152 4 15 chrX 36538691 36538960 -140435180 - AluJb SINE Alu -9 303 38 7526 115 70 101 chrX 36538960 36539048 -140435092 + ERVL LTR ERVL 3251 3340 -2424 1921 145 0 35 chrX 36539048 36539359 -140434781 + AluJb SINE Alu 1 300 -12 7526 115 70 101 chrX 36539359 36539808 -140434332 + ERVL LTR ERVL 3340 3785 -1979 1882 172 148 32 chrX 36539829 36540113 -140434027 + MLT2B1 LTR ERVL 1 251 -269 2233 116 0 0 chrX 36540113 36540422 -140433718 - AluSx SINE Alu 0 309 1 1882 172 148 32 chrX 36540422 36540602 -140433538 + MLT2B1 LTR ERVL 251 520 0 2183 128 7 3 chrX 36541039 36541344 -140432796 - AluSx SINE Alu -6 306 1 1693 148 97 0 chrX 36541434 36541712 -140432428 + AluJo SINE Alu 1 305 -7 2293 116 0 0 chrX 36541992 36542286 -140431854 - AluSx SINE Alu -18 294 1 2201 112 0 3 chrX 36542510 36542804 -140431336 - AluSx SINE Alu -19 293 1 240 257 0 29 chrX 36543577 36543647 -140430493 + MIR SINE MIR 171 238 -24 2327 107 7 0 chrX 36543666 36543966 -140430174 - AluSq SINE Alu -11 302 1 180 279 186 31 chrX 36544023 36544152 -140429988 + L2 LINE L2 2794 2942 -372 799 239 87 41 chrX 36544257 36544626 -140429514 + L1M4 LINE L1 2959 3344 -2802 1895 161 0 41 chrX 36544626 36544943 -140429197 + AluJo SINE Alu 1 304 -8 291 192 0 0 chrX 36545187 36545265 -140428875 + (AATAG)n Simple_repeat Simple_repeat 4 81 0 455 198 104 9 chrX 36545316 36545422 -140428718 - L2 LINE L2 -18 3295 3180 202 301 37 52 chrX 36545430 36545566 -140428574 - L2 LINE L2 -328 2944 2811 409 276 64 19 chrX 36545606 36545762 -140428378 - MIR SINE MIR -14 248 86 1208 198 34 4 chrX 36545778 36546015 -140428125 - AluJo SINE Alu -10 302 59 416 295 8 25 chrX 36646017 36646139 -140328001 + L2 LINE L2 3137 3256 -16 222 91 0 0 chrX 36646142 36646175 -140327965 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 357 316 132 21 chrX 36646570 36646760 -140327380 + MIR SINE MIR 1 211 -51 250 208 0 0 chrX 36646823 36646871 -140327269 + L2 LINE L2 3251 3298 -15 2294 87 3 3 chrX 36648595 36648894 -140325246 - AluSx SINE Alu -13 299 1 1189 37 0 0 chrX 36648894 36649029 -140325111 - AluSq/x SINE Alu -178 135 1 313 342 0 6 chrX 36650422 36650626 -140323514 + GA-rich Low_complexity Low_complexity 1 202 0 259 293 7 40 chrX 36651176 36651303 -140322837 + GA-rich Low_complexity Low_complexity 1 131 -719 2024 98 49 0 chrX 36651303 36651588 -140322552 + AluSx SINE Alu 1 299 -13 259 293 7 40 chrX 36651588 36651600 -140322540 + GA-rich Low_complexity Low_complexity 131 142 -708 2043 113 3 0 chrX 36651600 36651891 -140322249 + AluSx SINE Alu 1 292 -20 259 293 7 40 chrX 36651891 36652056 -140322084 + GA-rich Low_complexity Low_complexity 142 850 0 360 267 38 19 chrX 36652280 36652385 -140321755 - MIR SINE MIR -107 155 49 634 106 0 0 chrX 36652387 36652472 -140321668 + AluJ/FLAM SINE Alu 2 86 -226 2061 133 0 0 chrX 36652610 36652919 -140321221 - AluSx SINE Alu -3 309 1 257 0 30 0 chrX 36652919 36652952 -140321188 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2036 105 0 31 chrX 36652952 36653246 -140320894 - AluSx SINE Alu -27 285 1 373 39 0 0 chrX 36653254 36653306 -140320834 - L1MA6 LINE L1 -2 6298 6247 1501 157 53 11 chrX 36653307 36653469 -140320671 - AluJb SINE Alu -19 293 139 305 24 24 0 chrX 36653469 36653511 -140320629 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 2290 46 0 3 chrX 36653511 36653793 -140320347 - AluY SINE Alu -30 281 1 1501 157 53 11 chrX 36653793 36653910 -140320230 - AluJb SINE Alu -172 140 1 1976 145 0 3 chrX 36654405 36654709 -140319431 - AluJb SINE Alu -9 303 1 868 94 34 0 chrX 36655042 36655159 -140318981 - HSMAR2 DNA Mariner -319 983 863 2415 63 0 0 chrX 36655171 36655470 -140318670 - AluY SINE Alu -12 299 1 2304 72 0 3 chrX 36655471 36655763 -140318377 - AluY SINE Alu -20 291 1 1949 130 0 10 chrX 36655764 36656065 -140318075 - AluSq SINE Alu -15 298 1 455 97 0 0 chrX 36656065 36656127 -140318013 + MER4C LTR ERV1 404 465 0 896 225 49 85 chrX 36656130 36656197 -140317943 - L1MDa LINE L1 -6197 343 275 846 160 0 8 chrX 36656197 36656328 -140317812 - FLAM_A SINE Alu -1 132 3 896 225 49 85 chrX 36656328 36656589 -140317551 - L1MDa LINE L1 -6265 275 27 2317 93 0 3 chrX 36656838 36657149 -140316991 + AluSg SINE Alu 1 310 0 1761 166 0 10 chrX 36657192 36657506 -140316634 + AluJb SINE Alu 1 311 -1 680 253 16 21 chrX 36657509 36657695 -140316445 + PABL_B LTR ERV1 456 640 -27 2097 120 10 0 chrX 36657753 36658061 -140316079 + AluSx SINE Alu 1 311 -1 2181 96 0 7 chrX 36658065 36658368 -140315772 - AluSq SINE Alu -12 301 1 4962 241 24 15 chrX 36658383 36659650 -140314490 - L1MDa LINE L1 -2229 4311 3029 2148 125 0 0 chrX 36659650 36659953 -140314187 - AluSx SINE Alu -9 303 1 4962 241 24 15 chrX 36659953 36660175 -140313965 - L1MDa LINE L1 -3511 3029 2810 2104 90 3 7 chrX 36660179 36660467 -140313673 - AluSc SINE Alu -22 287 1 541 177 48 24 chrX 36660467 36660577 -140313563 - L1M2 LINE L1 -511 5780 5665 1964 104 0 11 chrX 36660577 36660857 -140313283 - AluSp SINE Alu -11 302 26 541 177 48 24 chrX 36660857 36660870 -140313270 - L1M2 LINE L1 -626 5665 5654 689 194 0 8 chrX 36660881 36661010 -140313130 - FLAM_A SINE Alu -2 131 4 2015 112 18 0 chrX 36661025 36661337 -140312803 - AluSx SINE Alu 0 317 1 2116 107 0 0 chrX 36661345 36661634 -140312506 - AluSg SINE Alu -21 289 1 4322 216 52 46 chrX 36661642 36661797 -140312343 - L1MDa LINE L1 -4021 2519 2366 1243 186 22 119 chrX 36661797 36662200 -140311940 + MLT1A1 LTR MaLR 2 365 0 4322 216 52 46 chrX 36662200 36662619 -140311521 - L1MDa LINE L1 -4174 2366 1951 1711 199 21 39 chrX 36662619 36663000 -140311140 + MLT1A2 LTR MaLR 1 374 0 4322 216 52 46 chrX 36663000 36663600 -140310540 - L1MDa LINE L1 -4589 1951 1356 2149 80 26 0 chrX 36663600 36663902 -140310238 - AluSq SINE Alu -3 310 1 4322 216 52 46 chrX 36663902 36663980 -140310160 - L1MDa LINE L1 -5184 1356 1280 1803 151 3 7 chrX 36663980 36664272 -140309868 - AluJb SINE Alu -21 291 1 4322 216 52 46 chrX 36664272 36664403 -140309737 - L1MDa LINE L1 -5260 1280 1125 1722 147 0 18 chrX 36664403 36664714 -140309426 - AluJb SINE Alu 0 306 1 1973 94 3 11 chrX 36664716 36665002 -140309138 - HSMAR2 DNA Mariner -965 337 54 334 190 63 13 chrX 36665002 36665081 -140309059 + L1ME3A LINE L1 3111 3193 -2953 330 139 0 42 chrX 36665087 36665159 -140308981 - HSMAR2 DNA Mariner -1232 70 2 782 263 38 82 chrX 36665159 36665360 -140308780 + L1ME3A LINE L1 5266 5474 -688 2111 98 0 10 chrX 36665360 36665656 -140308484 - AluSx SINE Alu -19 293 1 782 263 38 82 chrX 36665656 36665790 -140308350 + L1ME3A LINE L1 5474 5581 -581 2222 115 0 0 chrX 36665790 36666102 -140308038 - AluSq SINE Alu -1 312 1 782 263 38 82 chrX 36666102 36666191 -140307949 + L1ME3A LINE L1 5581 5672 -490 32975 32 4 3 chrX 36666216 36670504 -140303636 - L1PA4 LINE L1 -2 6153 1858 2233 86 6 19 chrX 36670504 36670818 -140303322 - AluSq SINE Alu -2 311 2 32975 32 4 3 chrX 36670818 36671245 -140302895 - L1PA4 LINE L1 -4297 1858 1433 5483 57 0 0 chrX 36671244 36671926 -140302214 + L1PA4 LINE L1 746 1427 -4719 * 662 212 20 0 chrX 36671924 36672075 -140302065 + L1ME3A LINE L1 5658 5811 -359 * 265 205 45 89 chrX 36672075 36672187 -140301953 + LTR40a LTR ERVL 41 147 -372 240 312 135 28 chrX 36672274 36672489 -140301651 + LTR40a LTR ERVL 186 423 -96 360 0 0 0 chrX 36672491 36672531 -140301609 + (TG)n Simple_repeat Simple_repeat 2 41 0 1168 148 10 15 chrX 36672531 36672733 -140301407 - AluJo SINE Alu -27 285 85 458 65 32 0 chrX 36672790 36672852 -140301288 + LTR40b LTR ERVL 394 457 -5 511 199 23 30 chrX 36672858 36672989 -140301151 + L1ME3A LINE L1 5810 5939 -231 2026 133 3 13 chrX 36672999 36673314 -140300826 + AluSq SINE Alu 1 312 -1 928 151 13 0 chrX 36673391 36673550 -140300590 - FRAM SINE Alu 0 176 16 2201 97 3 3 chrX 36673648 36673948 -140300192 - AluSc SINE Alu -9 300 1 2505 48 0 6 chrX 36674075 36674388 -140299752 - AluY SINE Alu 0 311 1 294 163 0 0 chrX 36674507 36674556 -140299584 - MER90 LTR ERV1 -3 611 563 1327 71 0 0 chrX 36674563 36674731 -140299409 - AluSg/x SINE Alu -11 301 134 2079 115 0 7 chrX 36674731 36675036 -140299104 - AluSq SINE Alu -10 303 1 477 207 0 11 chrX 36675039 36675126 -140299014 - MER90 LTR ERV1 -50 564 479 1423 163 0 4 chrX 36675128 36675367 -140298773 + AluJo SINE Alu 1 238 -74 273 109 0 0 chrX 36675371 36675417 -140298723 + (A)n Simple_repeat Simple_repeat 1 46 0 2127 113 3 10 chrX 36675419 36675729 -140298411 + AluSg SINE Alu 1 308 -2 2302 207 38 4 chrX 36675743 36676212 -140297928 - MER90 LTR ERV1 -129 485 1 780 164 23 64 chrX 36676241 36676412 -140297728 - LTR52 LTR ERVL -11 410 247 1769 152 14 3 chrX 36676415 36676712 -140297428 - AluJb SINE Alu -12 300 1 2310 173 29 62 chrX 36676713 36676782 -140297358 - L1 LINE L1 -768 5378 5308 2081 118 0 3 chrX 36676782 36677078 -140297062 + AluSx SINE Alu 1 295 -17 2310 173 29 62 chrX 36677078 36677407 -140296733 - L1 LINE L1 -838 5308 5000 2057 111 3 0 chrX 36677407 36677695 -140296445 - AluSx SINE Alu -23 289 1 2310 173 29 62 chrX 36677695 36677845 -140296295 - L1 LINE L1 -1146 5000 4847 1032 144 39 62 chrX 36677887 36677937 -140296203 - MSTD LTR MaLR 0 396 346 2208 110 0 0 chrX 36677937 36678236 -140295904 - AluSg SINE Alu -11 299 1 1032 144 39 62 chrX 36678236 36678393 -140295747 - MSTD LTR MaLR -50 346 194 1150 99 93 0 chrX 36678393 36678554 -140295586 + THE1B LTR MaLR 1 176 -188 1898 180 80 34 chrX 36678557 36678996 -140295144 - LTR2B LTR ERV1 0 490 32 54137 54 20 19 chrX 36679015 36683466 -140290674 - Harlequin LTR ERV1 0 6896 2429 2212 50 53 0 chrX 36683466 36683748 -140290392 - AluY SINE Alu -14 297 1 54137 54 20 19 chrX 36683748 36686181 -140287959 - Harlequin LTR ERV1 -4467 2429 1 1919 177 98 30 chrX 36686181 36686611 -140287529 - LTR2B LTR ERV1 0 490 32 11231 91 42 1 chrX 36686660 36688178 -140285962 + THE1B-int LTR MaLR 1 1580 0 2412 99 73 14 chrX 36688178 36688522 -140285618 + THE1B LTR MaLR 1 364 0 865 153 53 0 chrX 36688543 36688693 -140285447 - MSTD LTR MaLR -237 159 2 2618 205 81 39 chrX 36688694 36688910 -140285230 - MSTD-int LTR MaLR 0 1735 1530 2086 117 0 0 chrX 36688910 36689201 -140284939 + AluSx SINE Alu 1 291 -21 2618 205 81 39 chrX 36689201 36689603 -140284537 - MSTD-int LTR MaLR -205 1530 1091 824 159 0 7 chrX 36689593 36689744 -140284396 - L1 LINE L1 -1431 4715 4566 * 1563 164 3 33 chrX 36689756 36690055 -140284085 - AluJb SINE Alu -22 290 1 865 118 0 0 chrX 36690057 36690184 -140283956 - AluJb SINE Alu -180 132 6 1373 172 15 0 chrX 36690189 36690462 -140283678 - L1 LINE L1 -1567 4579 4303 3422 121 28 90 chrX 36690463 36690631 -140283509 + L1MA10 LINE L1 5666 5843 -491 2048 122 3 13 chrX 36690631 36690943 -140283197 + AluSx SINE Alu 1 309 -3 3422 121 28 90 chrX 36690943 36691487 -140282653 + L1MA10 LINE L1 5843 6334 0 1829 164 0 3 chrX 36691498 36691808 -140282332 + AluSx SINE Alu 1 309 -3 2179 92 0 32 chrX 36691864 36692178 -140281962 + AluSq SINE Alu 1 304 -9 1585 171 0 38 chrX 36692178 36692469 -140281671 - AluSx SINE Alu -31 281 1 1929 128 0 10 chrX 36693019 36693316 -140280824 - AluSx SINE Alu -18 294 1 979 128 34 0 chrX 36693321 36693470 -140280670 - AluJ SINE Alu -17 295 142 1734 145 3 7 chrX 36693583 36693873 -140280267 + AluJb SINE Alu 1 289 -23 876 137 15 0 chrX 36693984 36694115 -140280025 - AluJ SINE Alu -169 133 1 2362 78 3 0 chrX 36694354 36694663 -140279477 - AluSp SINE Alu -3 310 1 1522 138 7 39 chrX 36694937 36695219 -140278921 - AluJb SINE Alu -39 273 1 739 139 25 0 chrX 36695245 36695367 -140278773 - L1MB1 LINE L1 -1 6167 6043 2089 110 6 31 chrX 36695375 36695694 -140278446 - AluSx SINE Alu -1 311 1 2104 109 3 3 chrX 36695756 36696050 -140278090 + AluSx SINE Alu 1 294 -18 1311 84 0 0 chrX 36696050 36696217 -140277923 + AluSp SINE Alu 134 300 -13 975 136 0 13 chrX 36696220 36696374 -140277766 - L1MB1 LINE L1 -159 6009 5858 312 265 10 69 chrX 36696523 36696625 -140277515 - MER89-int LTR ERV1 -2536 2111 2016 2086 114 7 0 chrX 36696730 36697038 -140277102 - AluSx SINE Alu -2 310 1 844 108 46 0 chrX 36697038 36697168 -140276972 - AluSq/x SINE Alu -177 136 1 2508 47 0 0 chrX 36697354 36697652 -140276488 + AluY SINE Alu 1 298 -13 234 62 0 0 chrX 36697730 36697762 -140276378 + (TC)n Simple_repeat Simple_repeat 2 33 0 276 30 0 0 chrX 36697769 36697802 -140276338 + (TG)n Simple_repeat Simple_repeat 2 34 0 2048 113 0 7 chrX 36697803 36698096 -140276044 - AluSc SINE Alu -18 291 1 1782 86 0 0 chrX 36698127 36698360 -140275780 - AluSx SINE Alu -78 234 2 2644 150 33 2 chrX 36698360 36698819 -140275321 - L1MB3 LINE L1 -83 6100 5628 21 36 0 0 chrX 36698835 36698863 -140275277 + AT_rich Low_complexity Low_complexity 1 28 0 1791 138 0 4 chrX 36698864 36699147 -140274993 + AluSx SINE Alu 1 282 -30 208 0 0 0 chrX 36699147 36699170 -140274970 + (TAA)n Simple_repeat Simple_repeat 2 180 0 837 167 0 0 chrX 36699215 36699341 -140274799 - FLAM_C SINE Alu -13 130 5 290 304 98 21 chrX 36699355 36699549 -140274591 - MER89-int LTR ERV1 -3190 3611 3403 216 0 0 0 chrX 36700011 36700035 -140274105 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 839 161 20 7 chrX 36700036 36700185 -140273955 - AluJb SINE Alu -25 287 137 1878 141 7 13 chrX 36700401 36700705 -140273435 + AluSx SINE Alu 3 304 -8 2149 105 0 0 chrX 36700731 36701044 -140273096 + AluSx SINE Alu 1 312 0 1841 147 0 3 chrX 36701271 36701557 -140272583 + AluSx SINE Alu 1 285 -27 22 56 0 0 chrX 36701629 36701665 -140272475 + AT_rich Low_complexity Low_complexity 1 36 0 2209 99 3 0 chrX 36701840 36702143 -140271997 - AluSc SINE Alu -5 304 1 254 120 80 0 chrX 36702149 36702199 -140271941 - L1MA3 LINE L1 0 6305 6252 * 931 134 8 3 chrX 36702182 36702199 -140271941 - L1MB7 LINE L1 -336 5844 5829 1782 108 93 0 chrX 36702199 36702468 -140271672 - AluSx SINE Alu -18 294 1 931 134 8 3 chrX 36702468 36702649 -140271491 - L1MB7 LINE L1 -351 5829 5644 2025 129 3 3 chrX 36702649 36702959 -140271181 + AluJb SINE Alu 1 310 -2 229 320 7 20 chrX 36703031 36703168 -140270972 - L1M4 LINE L1 -1519 4627 4491 2207 100 0 7 chrX 36703168 36703467 -140270673 - AluSx SINE Alu -15 297 1 229 320 7 20 chrX 36703467 36703482 -140270658 - L1M4 LINE L1 -1655 4491 4477 261 241 129 35 chrX 36703484 36703600 -140270540 - HAL1b LINE L1 -34 1314 1188 205 167 0 0 chrX 36703678 36703714 -140270426 + (TATG)n Simple_repeat Simple_repeat 1 36 0 219 291 9 27 chrX 36703724 36703834 -140270306 + (CAGAGA)n Simple_repeat Simple_repeat 4 111 0 1777 151 7 3 chrX 36703900 36704205 -140269935 + AluSx SINE Alu 1 306 -6 225 302 17 26 chrX 36704247 36704363 -140269777 - MIR SINE MIR -71 191 77 21 0 0 0 chrX 36704840 36704861 -140269279 + GC_rich Low_complexity Low_complexity 1 21 0 282 29 0 0 chrX 36705497 36705532 -140268608 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 288 0 0 0 chrX 36705531 36705563 -140268577 + (TG)n Simple_repeat Simple_repeat 1 32 0 240 180 0 0 chrX 36706288 36706338 -140267802 - L1ME3 LINE L1 -204 5958 5909 1138 275 70 53 chrX 36706444 36706940 -140267200 - L1ME3 LINE L1 -286 5884 5375 1594 179 16 13 chrX 36706940 36707247 -140266893 - AluJo SINE Alu -4 308 1 1138 275 70 53 chrX 36707247 36707368 -140266772 - L1ME3 LINE L1 -795 5375 5257 339 257 50 40 chrX 36707570 36707671 -140266469 + L1MC/D LINE L1 5640 5741 -2067 228 253 0 46 chrX 36708307 36708394 -140265746 + C-rich Low_complexity Low_complexity 1 83 0 293 176 20 0 chrX 36709310 36709361 -140264779 + MER115 DNA AcHobo 8 59 -634 882 254 49 66 chrX 36709473 36709915 -140264225 + MER115 DNA AcHobo 207 685 -8 316 340 110 11 chrX 36709982 36710208 -140263932 + L2 LINE L2 3006 3313 0 951 170 12 12 chrX 36711502 36711673 -140262467 - L1MB8 LINE L1 -6 6172 6002 313 228 51 0 chrX 36711681 36711760 -140262380 + L2 LINE L2 3209 3291 -22 189 258 0 118 chrX 36711755 36711848 -140262292 - L2 LINE L2 -89 3224 3143 * 319 225 121 55 chrX 36711873 36712015 -140262125 - L2 LINE L2 0 3313 3155 2234 78 3 10 chrX 36712015 36712321 -140261819 + AluSq SINE Alu 1 304 -9 319 225 121 55 chrX 36712321 36712360 -140261780 - L2 LINE L2 -158 3155 3120 338 215 181 62 chrX 36712404 36712548 -140261592 - L2 LINE L2 0 3313 3153 262 209 15 15 chrX 36713925 36713992 -140260148 + C-rich Low_complexity Low_complexity 3 69 0 311 247 139 77 chrX 36714342 36714454 -140259686 + MLT1J LTR MaLR 107 237 -274 2081 123 7 0 chrX 36714454 36714755 -140259385 + AluSq SINE Alu 3 305 -8 311 247 139 77 chrX 36714755 36714836 -140259304 + MLT1J LTR MaLR 237 312 -199 337 250 95 0 chrX 36717968 36718052 -140256088 - MIR SINE MIR 0 262 171 528 259 108 27 chrX 36718247 36718432 -140255708 - MIR SINE MIR -62 200 1 344 247 89 62 chrX 36718448 36718535 -140255605 + MIR SINE MIR 71 154 -108 2273 92 0 16 chrX 36718535 36718851 -140255289 + AluSx SINE Alu 1 311 -1 1916 110 59 7 chrX 36718855 36719145 -140254995 + AluSg SINE Alu 4 308 -2 344 247 89 62 chrX 36719145 36719198 -140254942 + MIR SINE MIR 156 220 -42 1939 134 0 3 chrX 36719205 36719521 -140254619 + AluSx SINE Alu 1 312 0 198 196 0 22 chrX 36719565 36719611 -140254529 - MIR SINE MIR -107 155 111 881 243 16 51 chrX 36719689 36719944 -140254196 + MIR SINE MIR 17 262 0 213 258 21 81 chrX 36720391 36720506 -140253634 + (CAGAGA)n Simple_repeat Simple_repeat 2 103 -73 2266 78 10 0 chrX 36720506 36720799 -140253341 + AluY SINE Alu 1 296 -15 213 258 21 81 chrX 36720799 36720869 -140253271 + (CAGAGA)n Simple_repeat Simple_repeat 103 176 0 2349 77 0 10 chrX 36723064 36723376 -140250764 - AluY SINE Alu 0 311 3 806 189 88 0 chrX 36723379 36723527 -140250613 - AluJb SINE Alu -17 295 135 402 276 50 14 chrX 36725018 36725221 -140248919 - MIR SINE MIR 0 262 51 469 324 0 0 chrX 36725996 36726175 -140247965 + (TTCA)n Simple_repeat Simple_repeat 1 179 0 2266 100 0 3 chrX 36727137 36727447 -140246693 + AluSx SINE Alu 1 309 -3 242 325 31 43 chrX 36727593 36727756 -140246384 + HAL1 LINE L1 3 163 -2344 689 233 5 15 chrX 36728280 36728486 -140245654 + L1MC5 LINE L1 7645 7848 -113 467 245 69 69 chrX 36728496 36728684 -140245456 + L1M4 LINE L1 3074 3261 -2885 370 272 126 46 chrX 36728883 36729032 -140245108 + HAL1 LINE L1 816 952 -1555 2241 96 0 0 chrX 36729032 36729324 -140244816 - AluSx SINE Alu -20 292 1 370 272 126 46 chrX 36729324 36729523 -140244617 + HAL1 LINE L1 952 1192 -1315 1395 141 0 9 chrX 36729523 36729769 -140244371 + AluJb SINE Alu 87 312 0 509 266 181 16 chrX 36729771 36729970 -140244170 + HAL1 LINE L1 1197 1362 -1145 1865 159 3 13 chrX 36729970 36730278 -140243862 + AluJo SINE Alu 1 305 -7 509 266 181 16 chrX 36730278 36730382 -140243758 + HAL1 LINE L1 1362 1550 -957 1520 132 0 60 chrX 36730472 36730530 -140243610 + MER46A DNA MER2_type 1 61 -2670 2094 96 17 7 chrX 36730530 36730823 -140243317 - AluSx SINE Alu -16 296 1 1520 132 0 60 chrX 36730823 36731015 -140243125 + MER46A DNA MER2_type 61 236 0 864 301 88 22 chrX 36731057 36731602 -140242538 + L1MC4a LINE L1 5532 6103 -18 358 292 140 0 chrX 36731746 36731924 -140242216 + MIR SINE MIR 49 251 -11 2337 81 0 3 chrX 36732534 36732842 -140241298 + AluSc SINE Alu 1 307 -2 25 0 0 0 chrX 36732951 36732976 -140241164 + AT_rich Low_complexity Low_complexity 1 25 0 401 290 143 18 chrX 36732986 36733203 -140240937 + L1MC4a LINE L1 5694 5937 -1871 849 203 6 11 chrX 36733222 36733399 -140240741 - MER104 DNA MER2_type -4 176 1 204 330 51 66 chrX 36734184 36734381 -140239759 + L2 LINE L2 2920 3113 -159 328 308 135 26 chrX 36734416 36734572 -140239568 - MIR SINE MIR -1 261 89 1146 270 88 31 chrX 36735057 36735740 -140238400 + L2 LINE L2 2550 3293 -20 888 288 160 19 chrX 36735864 36736157 -140237983 - L2 LINE L2 -245 3068 2818 2182 117 3 3 chrX 36736157 36736466 -140237674 - AluSq SINE Alu -4 309 1 888 288 160 19 chrX 36736466 36736676 -140237464 - L2 LINE L2 -495 2818 2502 266 333 69 87 chrX 36736707 36736983 -140237157 + L2 LINE L2 3001 3271 -1 297 229 0 0 chrX 36739210 36739271 -140234869 - MIR SINE MIR -84 178 118 424 193 12 0 chrX 36739281 36739364 -140234776 + MIR SINE MIR 78 161 -101 640 112 128 40 chrX 36739945 36740070 -140234070 - MER58C DNA MER1_type 0 215 80 1873 144 3 23 chrX 36740420 36740726 -140233414 - AluJb SINE Alu -2 310 11 1856 151 3 16 chrX 36740891 36741195 -140232945 + AluJb SINE Alu 1 300 -12 1904 100 89 0 chrX 36741200 36741481 -140232659 + AluSx SINE Alu 1 306 -6 1404 234 138 13 chrX 36741508 36741906 -140232234 - MLT1J2 LTR MaLR -2 448 1 1428 154 70 32 chrX 36741928 36742240 -140231900 + MER33 DNA MER1_type 1 324 0 2423 113 12 12 chrX 36743194 36743531 -140230609 - MER1B DNA MER1_type 0 337 1 259 390 37 5 chrX 36744690 36744880 -140229260 + MIR SINE MIR 58 253 -9 184 299 134 0 chrX 36744896 36744993 -140229147 + MIR SINE MIR 14 123 -139 463 294 5 54 chrX 36746784 36746968 -140227172 + G-rich Low_complexity Low_complexity 3 177 0 610 182 203 14 chrX 36747391 36747539 -140226601 + MER5B DNA MER1_type 3 178 0 518 283 17 11 chrX 36749289 36749466 -140224674 + CT-rich Low_complexity Low_complexity 3 180 0 241 240 15 15 chrX 36749542 36749820 -140224320 + CT-rich Low_complexity Low_complexity 1 278 0 1946 115 21 7 chrX 36749889 36750175 -140223965 - AluJb SINE Alu -22 290 1 380 357 0 27 chrX 36750175 36750360 -140223780 + C-rich Low_complexity Low_complexity 1 180 0 2441 103 0 0 chrX 36751011 36751321 -140222819 - AluSx SINE Alu -2 310 1 365 308 13 6 chrX 36751351 36751507 -140222633 + CT-rich Low_complexity Low_complexity 2 158 0 300 263 38 31 chrX 36751853 36752013 -140222127 + (TCTCTG)n Simple_repeat Simple_repeat 2 162 0 211 238 9 9 chrX 36752026 36752131 -140222009 + CT-rich Low_complexity Low_complexity 2 106 0 295 78 39 0 chrX 36753795 36753846 -140220294 + CT-rich Low_complexity Low_complexity 1 53 0 224 186 0 0 chrX 36754177 36754220 -140219920 - MIR SINE MIR -114 148 106 478 335 0 0 chrX 36754552 36754731 -140219409 + GA-rich Low_complexity Low_complexity 2 180 0 303 273 0 36 chrX 36754740 36754905 -140219235 + (CAGAGA)n Simple_repeat Simple_repeat 2 160 0 2430 97 0 0 chrX 36755687 36755986 -140218154 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 36756077 36756383 -140217757 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 36756576 36756882 -140217258 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 36756902 36757220 -140216920 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 36757222 36757517 -140216623 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 36757699 36758004 -140216136 + AluY SINE Alu 1 304 -7 2214 104 0 42 chrX 36758042 36758386 -140215754 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 36760206 36760278 -140213862 - AluS SINE Alu -6 304 233 1371 117 0 29 chrX 36760312 36760449 -140213691 + AluSx SINE Alu 1 132 -180 2135 106 31 7 chrX 36760449 36760741 -140213399 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 36760741 36760808 -140213332 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 36760809 36760877 -140213263 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 36760877 36761195 -140212945 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 36761199 36761652 -140212488 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 36762147 36762191 -140211949 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 36762195 36762306 -140211834 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 36762306 36762611 -140211529 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 36762611 36762735 -140211405 - MIR SINE MIR -91 171 41 203 200 127 0 chrX 36765370 36765425 -140208715 + L2 LINE L2 3137 3198 -74 2120 129 17 3 chrX 36765454 36765756 -140208384 - AluSx SINE Alu -6 306 1 2175 127 17 0 chrX 36765883 36766183 -140207957 - AluSx SINE Alu -7 305 1 2109 108 0 54 chrX 36766193 36766400 -140207740 - AluSx SINE Alu 0 330 113 2228 110 3 0 chrX 36766400 36766692 -140207448 - AluSg SINE Alu -17 293 1 2359 103 0 3 chrX 36766692 36766992 -140207148 - AluSx SINE Alu -13 299 1 2109 108 0 54 chrX 36766992 36767130 -140207010 - AluSx SINE Alu -215 115 1 2110 112 7 43 chrX 36767170 36767473 -140206667 - AluSx SINE Alu -20 292 1 2381 103 0 3 chrX 36767491 36767803 -140206337 - AluY SINE Alu 0 311 1 1099 173 25 25 chrX 36767823 36767960 -140206180 - L1MD3 LINE L1 -16 7979 7840 2483 78 16 0 chrX 36767960 36768266 -140205874 + AluY SINE Alu 1 311 0 1099 173 25 25 chrX 36768266 36768365 -140205775 - L1MD3 LINE L1 -154 7841 7743 1658 260 80 30 chrX 36768373 36768912 -140205228 - MLT1E LTR MaLR -13 580 15 2592 136 29 100 chrX 36768975 36769055 -140205085 + L1MD3 LINE L1 6668 6752 -1243 2290 118 0 0 chrX 36769055 36769360 -140204780 - AluSq SINE Alu -8 305 1 2592 136 29 100 chrX 36769360 36769515 -140204625 + L1MD3 LINE L1 6752 6916 -1079 2555 80 0 3 chrX 36769515 36769827 -140204313 + AluSq SINE Alu 1 311 -2 2592 136 29 100 chrX 36769827 36769890 -140204250 + L1MD3 LINE L1 6916 6982 -1013 2368 98 0 0 chrX 36769890 36770187 -140203953 + AluSc SINE Alu 1 297 -12 2592 136 29 100 chrX 36770187 36770324 -140203816 + L1MD3 LINE L1 6982 7049 -946 876 207 0 0 chrX 36770324 36770488 -140203652 + FAM SINE Alu 1 164 -11 2592 136 29 100 chrX 36770488 36770681 -140203459 + L1MD3 LINE L1 7049 7254 -741 646 175 67 0 chrX 36770689 36770809 -140203331 + AluJb SINE Alu 2 129 -183 2043 103 92 0 chrX 36770811 36771092 -140203048 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 36771092 36771115 -140203025 + AT_rich Low_complexity Low_complexity 1 23 0 2346 64 3 20 chrX 36771120 36771418 -140202722 + AluY SINE Alu 1 293 -18 502 162 27 36 chrX 36771429 36771540 -140202600 + MLT1F1 LTR MaLR 13 122 -445 2303 123 0 0 chrX 36771540 36771848 -140202292 + AluSx SINE Alu 1 308 -4 1595 82 5 0 chrX 36771849 36772044 -140202096 + AluSc SINE Alu 1 196 -113 263 32 0 0 chrX 36772044 36772075 -140202065 - AluY SINE Alu -215 93 63 1315 128 0 39 chrX 36772075 36772279 -140201861 - AluSx SINE Alu -115 197 2 444 37 0 0 chrX 36772285 36772339 -140201801 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2471 87 7 0 chrX 36772341 36772651 -140201489 - AluSx SINE Alu 0 312 1 2332 96 3 3 chrX 36772812 36773113 -140201027 - AluSx SINE Alu -11 301 1 386 259 0 9 chrX 36773117 36773225 -140200915 + L1MEc LINE L1 45 151 -6245 985 178 18 0 chrX 36773225 36773394 -140200746 + AluJb SINE Alu 133 304 -8 480 216 10 0 chrX 36773394 36773491 -140200649 + L1MEc LINE L1 137 234 -6162 1953 113 31 9 chrX 36773505 36773831 -140200309 + L1MB4 LINE L1 5848 6180 0 1976 206 130 51 chrX 36773831 36774238 -140199902 + L1M4 LINE L1 3335 3708 -2438 2367 113 3 0 chrX 36774238 36774549 -140199591 - AluSx SINE Alu 0 312 1 1976 206 130 51 chrX 36774549 36774705 -140199435 + L1M4 LINE L1 3708 3850 -2296 2357 95 0 16 chrX 36774705 36775022 -140199118 + AluSq SINE Alu 1 312 -1 1976 206 130 51 chrX 36775022 36775141 -140198999 + L1M4 LINE L1 3850 4072 -2074 2342 79 30 13 chrX 36775167 36775470 -140198670 - AluSq SINE Alu -5 308 1 1617 140 115 11 chrX 36775471 36775749 -140198391 - AluSg SINE Alu -3 307 1 1236 187 0 9 chrX 36775812 36776026 -140198114 + AluSx SINE Alu 1 212 -100 368 96 0 9 chrX 36776026 36776118 -140198022 + AluSq SINE Alu 78 250 -53 1278 164 0 22 chrX 36776118 36776171 -140197969 + AluJb SINE Alu 85 138 -174 2099 148 0 7 chrX 36776171 36776474 -140197666 + AluSg SINE Alu 1 301 -9 1278 164 0 22 chrX 36776474 36776651 -140197489 + AluJb SINE Alu 138 310 -2 1880 196 53 24 chrX 36776655 36776813 -140197327 + L1M4 LINE L1 4476 4628 -1518 2570 51 14 0 chrX 36776813 36777108 -140197032 - AluSp SINE Alu -14 299 1 1880 196 53 24 chrX 36777108 36777402 -140196738 + L1M4 LINE L1 4628 4941 -1205 2085 119 0 10 chrX 36777415 36777709 -140196431 - AluSx SINE Alu 0 312 22 335 263 47 84 chrX 36777723 36777793 -140196347 + L1ME2 LINE L1 5972 6043 -121 2320 101 0 0 chrX 36777793 36778091 -140196049 - AluSg SINE Alu -12 298 1 335 263 47 84 chrX 36778091 36778139 -140196001 + L1ME2 LINE L1 6043 6091 -73 2479 66 10 13 chrX 36778139 36778444 -140195696 - AluY SINE Alu -7 304 1 335 263 47 84 chrX 36778444 36778514 -140195626 + L1ME2 LINE L1 6091 6154 -10 2736 29 0 22 chrX 36778529 36778845 -140195295 + AluY SINE Alu 1 309 -2 570 233 0 8 chrX 36778867 36778996 -140195144 + AluJo SINE Alu 2 129 -183 323 341 0 11 chrX 36779007 36779095 -140195045 - L1MC4 LINE L1 -1339 6703 6617 2294 81 18 0 chrX 36779095 36779379 -140194761 - AluSq SINE Alu -24 289 1 2416 65 0 7 chrX 36779385 36779679 -140194461 - AluSc SINE Alu -17 292 1 1244 145 0 0 chrX 36779698 36779870 -140194270 + AluJo SINE Alu 130 301 -11 706 144 0 17 chrX 36779875 36779993 -140194147 + AluSg/x SINE Alu 174 289 -21 994 188 53 122 chrX 36780006 36780383 -140193757 + L1MC4a LINE L1 6352 6702 -1106 2249 138 0 0 chrX 36780392 36780704 -140193436 - AluSx SINE Alu 0 312 1 1009 159 7 0 chrX 36780764 36780915 -140193225 + AluJo SINE Alu 6 157 -155 1187 153 0 11 chrX 36780916 36781099 -140193041 + AluJb SINE Alu 115 295 -17 2103 118 3 39 chrX 36781107 36781412 -140192728 + AluSq SINE Alu 1 294 -19 784 208 6 6 chrX 36781414 36781573 -140192567 + AluJo SINE Alu 137 295 -7 2353 111 0 0 chrX 36781585 36781891 -140192249 + AluSq SINE Alu 3 308 -5 2170 130 0 16 chrX 36781894 36782031 -140192109 + AluSx SINE Alu 1 139 -173 9406 24 0 0 chrX 36782031 36783972 -140190168 + L1PA3 LINE L1 4235 6155 0 2170 130 0 16 chrX 36783972 36784149 -140189991 + AluSx SINE Alu 139 310 -2 1911 185 31 24 chrX 36784221 36784494 -140189646 - MER68 LTR ERV1 -148 414 135 2054 120 3 3 chrX 36784494 36784815 -140189325 - AluSx SINE Alu 0 321 1 1911 185 31 24 chrX 36784815 36784923 -140189217 - MER68 LTR ERV1 -427 135 29 1844 103 4 0 chrX 36784985 36785228 -140188912 - AluSx SINE Alu -10 302 59 998 222 63 0 chrX 36785259 36785480 -140188660 - L1MC4 LINE L1 -513 7529 7295 388 94 0 0 chrX 36785480 36785533 -140188607 + AluJo SINE Alu 87 139 -163 1591 85 0 24 chrX 36785538 36785750 -140188390 + AluSq SINE Alu 1 207 -106 1203 95 0 0 chrX 36785750 36785898 -140188242 - AluSq/x SINE Alu -164 148 1 2434 94 0 0 chrX 36785898 36786206 -140187934 - AluSx SINE Alu -4 308 1 849 150 52 0 chrX 36786207 36786380 -140187760 - L1MC4 LINE L1 -828 7214 7033 763 87 0 0 chrX 36786401 36786504 -140187636 - L1MC4 LINE L1 -1153 6889 6787 531 261 29 19 chrX 36786496 36786703 -140187437 + L1 LINE L1 4141 4349 -1797 * 983 196 0 12 chrX 36786724 36786892 -140187248 + FAM SINE Alu 6 171 -14 325 238 29 57 chrX 36786903 36787008 -140187132 + L1 LINE L1 4366 4467 -1679 512 228 20 13 chrX 36787008 36787157 -140186983 + L1MC3 LINE L1 6086 6235 -1550 1929 132 48 0 chrX 36787158 36787453 -140186687 + AluSx SINE Alu 1 309 -3 2135 141 0 10 chrX 36787462 36787775 -140186365 + AluJb SINE Alu 1 310 -2 2364 81 3 19 chrX 36787781 36788088 -140186052 + AluSx SINE Alu 1 302 -10 2402 97 3 0 chrX 36788088 36788398 -140185742 + AluSp SINE Alu 1 312 -1 1096 103 0 0 chrX 36788404 36788540 -140185600 + AluSq/x SINE Alu 1 136 -176 2395 96 0 10 chrX 36788540 36788843 -140185297 + AluSx SINE Alu 1 300 -12 862 148 8 0 chrX 36788846 36788968 -140185172 - AluJo/FLAM SINE Alu -189 123 1 2409 64 7 7 chrX 36788977 36789275 -140184865 - AluSq SINE Alu -15 298 1 1117 209 104 3 chrX 36789399 36789686 -140184454 - L1ME3 LINE L1 -90 6072 5757 380 240 23 38 chrX 36790049 36790171 -140183969 + MIR SINE MIR 31 153 -76 26 0 0 0 chrX 36790179 36790205 -140183935 + AT_rich Low_complexity Low_complexity 1 26 0 2490 59 0 0 chrX 36790205 36790495 -140183645 - AluY SINE Alu -21 290 1 2157 72 11 0 chrX 36790498 36790763 -140183377 - AluSx SINE Alu -6 306 39 1562 279 78 7 chrX 36790784 36791232 -140182908 - MLT1J LTR MaLR -31 480 1 253 257 71 0 chrX 36792467 36792537 -140181603 - MER91B DNA MER1_type -26 164 90 2296 103 3 0 chrX 36792562 36792852 -140181288 + AluSx SINE Alu 2 292 -20 1025 187 21 43 chrX 36792905 36793140 -140181000 + MIR SINE MIR 12 241 -21 292 175 39 10 chrX 36794160 36794263 -140179877 + (TCTCTG)n Simple_repeat Simple_repeat 3 108 0 229 273 29 36 chrX 36794270 36794322 -140179818 + CT-rich Low_complexity Low_complexity 1 52 -86 2542 87 3 0 chrX 36794322 36794634 -140179506 - AluSp SINE Alu 0 313 1 229 273 29 36 chrX 36794634 36794720 -140179420 + CT-rich Low_complexity Low_complexity 52 138 0 210 328 0 0 chrX 36794845 36794903 -140179237 - L2 LINE L2 -92 3180 3123 333 0 0 0 chrX 36794969 36795006 -140179134 + (CA)n Simple_repeat Simple_repeat 2 38 0 562 69 0 0 chrX 36795341 36795413 -140178727 + AluS SINE Alu 24 95 -218 363 20 5 0 chrX 36795413 36795462 -140178678 - AluY SINE Alu -256 44 2 2331 112 0 6 chrX 36795727 36796041 -140178099 - AluSx SINE Alu 0 312 1 240 265 20 51 chrX 36796051 36796149 -140177991 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 838 167 7 21 chrX 36796817 36796961 -140177179 + FLAM_C SINE Alu 1 142 -1 2239 119 10 3 chrX 36797028 36797331 -140176809 + AluSx SINE Alu 1 305 -7 2466 90 0 0 chrX 36797447 36797746 -140176394 + AluSq SINE Alu 1 299 -14 246 269 124 54 chrX 36797766 36798047 -140176093 - L1MC4 LINE L1 -307 7735 7334 225 250 28 14 chrX 36798064 36798136 -140176004 - MIR SINE MIR -71 191 119 189 0 0 0 chrX 36798415 36798436 -140175704 + (CCTG)n Simple_repeat Simple_repeat 3 23 0 386 298 16 25 chrX 36798785 36799030 -140175110 + CT-rich Low_complexity Low_complexity 1 242 0 180 296 0 0 chrX 36799156 36799200 -140174940 - MIR SINE MIR -164 98 55 368 328 17 11 chrX 36799589 36799793 -140174347 + (TCCA)n Simple_repeat Simple_repeat 1 205 0 216 0 0 0 chrX 36800753 36800777 -140173363 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 349 273 12 0 chrX 36801151 36801323 -140172817 + (TGGA)n Simple_repeat Simple_repeat 4 177 0 384 294 7 28 chrX 36801336 36801479 -140172661 + (TGGA)n Simple_repeat Simple_repeat 4 143 0 221 283 0 8 chrX 36801642 36801762 -140172378 + (TGGA)n Simple_repeat Simple_repeat 4 122 0 401 271 94 52 chrX 36801912 36802104 -140172036 - MIR SINE MIR -43 219 20 181 152 0 0 chrX 36802646 36802679 -140171461 - MIR SINE MIR -61 147 115 223 240 0 0 chrX 36803111 36803161 -140170979 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2198 116 0 0 chrX 36805584 36805886 -140168254 - AluSx SINE Alu -10 302 1 372 224 31 31 chrX 36805887 36805985 -140168155 + MIR3 SINE MIR 104 201 -7 260 280 138 5 chrX 36805989 36806179 -140167961 + MIR SINE MIR 39 256 -6 23 0 0 0 chrX 36806304 36806327 -140167813 + AT_rich Low_complexity Low_complexity 1 23 0 268 285 180 23 chrX 36806604 36806776 -140167364 - MIR SINE MIR -5 257 59 278 205 19 28 chrX 36807397 36807485 -140166655 - MIR SINE MIR -60 148 60 256 320 94 8 chrX 36808176 36808304 -140165836 - L2 LINE L2 -214 3058 2920 2285 77 7 3 chrX 36808765 36809062 -140165078 - AluSc SINE Alu -11 298 1 1981 93 0 99 chrX 36809065 36809261 -140164879 - AluSq SINE Alu -12 301 150 2202 111 3 0 chrX 36809261 36809567 -140164573 - AluSg SINE Alu -3 307 1 1981 93 0 99 chrX 36809567 36809704 -140164436 - AluSq SINE Alu -163 150 1 976 245 36 5 chrX 36809704 36810001 -140164139 - L2 LINE L2 -235 3078 2775 628 233 140 40 chrX 36810017 36810245 -140163895 - MIR SINE MIR -1 261 11 247 196 0 0 chrX 36810270 36810316 -140163824 + MIR SINE MIR 205 250 -12 2407 71 0 0 chrX 36810341 36810638 -140163502 - AluY SINE Alu -14 297 1 2319 95 3 0 chrX 36810644 36810949 -140163191 - AluSx SINE Alu -6 306 1 316 240 279 0 chrX 36812661 36812765 -140161375 - MIR3 SINE MIR -37 171 39 281 198 245 28 chrX 36812906 36813012 -140161128 + MIR SINE MIR 22 150 -112 * 1098 332 102 10 chrX 36813010 36813789 -140160351 - L2 LINE L2 0 3272 2397 452 297 38 38 chrX 36814205 36814390 -140159750 - MIR SINE MIR -65 197 13 264 259 213 0 chrX 36814409 36814517 -140159623 - MIR SINE MIR -14 248 118 617 81 40 10 chrX 36814521 36814620 -140159520 + U6 snRNA snRNA 1 102 -5 186 323 21 21 chrX 36814642 36814738 -140159402 - MIR SINE MIR -81 127 32 2149 103 0 22 chrX 36814842 36815161 -140158979 + AluJo SINE Alu 1 312 0 342 45 0 0 chrX 36816043 36816087 -140158053 + (CCG)n Simple_repeat Simple_repeat 1 44 0 207 211 14 14 chrX 36816255 36816326 -140157814 + (CCG)n Simple_repeat Simple_repeat 3 73 0 * 240 253 23 0 chrX 36816314 36816401 -140157739 + (CGG)n Simple_repeat Simple_repeat 1 89 0 198 0 0 0 chrX 36817470 36817492 -140156648 + (CA)n Simple_repeat Simple_repeat 2 23 0 926 112 8 15 chrX 36819545 36819679 -140154461 + FLAM_A SINE Alu 1 133 0 282 270 0 22 chrX 36820217 36820306 -140153834 + MIR SINE MIR 45 131 -131 187 343 46 9 chrX 36821025 36821133 -140153007 + MIR SINE MIR 41 152 -56 2084 172 0 26 chrX 36821306 36821695 -140152445 - L1MB8 LINE L1 0 6178 5800 2196 109 0 6 chrX 36821721 36822033 -140152107 - AluSx SINE Alu -2 310 1 2252 79 0 3 chrX 36822181 36822472 -140151668 - AluY SINE Alu -21 290 1 1666 226 41 68 chrX 36822874 36822943 -140151197 - MLT1D LTR MaLR 0 505 436 2284 73 0 67 chrX 36822943 36823273 -140150867 + AluSg1 SINE Alu 1 308 -1 1666 226 41 68 chrX 36823273 36823633 -140150507 - MLT1D LTR MaLR -69 436 68 2053 102 48 0 chrX 36823641 36823936 -140150204 - AluSx SINE Alu -1 311 3 1783 138 13 20 chrX 36823936 36824101 -140150039 - AluJb SINE Alu -16 296 130 2217 107 0 0 chrX 36824101 36824409 -140149731 - AluSx SINE Alu -4 308 1 1783 138 13 20 chrX 36824409 36824539 -140149601 - AluJb SINE Alu -182 130 1 1666 226 41 68 chrX 36824539 36824625 -140149515 - MLT1D LTR MaLR -437 68 3 381 250 132 26 chrX 36824699 36824851 -140149289 - MIR SINE MIR -73 189 22 2145 114 0 16 chrX 36825423 36825739 -140148401 - AluSx SINE Alu -1 311 1 2443 73 3 3 chrX 36826071 36826384 -140147756 - AluSp SINE Alu 0 313 1 2023 134 0 19 chrX 36826395 36826708 -140147432 - AluSx SINE Alu -5 307 1 315 345 52 0 chrX 36826799 36826915 -140147225 + L2 LINE L2 3151 3272 0 283 258 168 3 chrX 36827498 36827641 -140146499 - MIR3 SINE MIR -79 183 1 24 0 0 0 chrX 36827945 36827969 -140146171 + AT_rich Low_complexity Low_complexity 1 24 0 878 210 101 34 chrX 36827995 36828235 -140145905 - MER46C DNA MER2_type -23 315 54 2407 72 0 0 chrX 36828235 36828539 -140145601 + AluY SINE Alu 1 304 -7 878 210 101 34 chrX 36828539 36828565 -140145575 - MER46C DNA MER2_type -284 54 31 2197 100 3 3 chrX 36828762 36829063 -140145077 - AluSp SINE Alu -12 301 1 400 291 47 20 chrX 36829903 36830051 -140144089 - MIR SINE MIR -96 166 15 874 214 21 83 chrX 36830166 36830503 -140143637 - L1MC5 LINE L1 -28 7933 7618 263 262 195 20 chrX 36830656 36830805 -140143335 + MIR3 SINE MIR 30 204 -4 413 275 112 17 chrX 36830841 36831019 -140143121 + MIR SINE MIR 49 243 -19 626 101 9 0 chrX 36831466 36831575 -140142565 + (TG)n Simple_repeat Simple_repeat 2 111 0 236 280 140 0 chrX 36832221 36832314 -140141826 - MIR SINE MIR -109 153 48 2317 94 0 7 chrX 36832334 36832643 -140141497 - AluSg SINE Alu -3 307 1 210 299 11 46 chrX 36832664 36832751 -140141389 + MIR SINE MIR 48 131 -77 240 259 59 87 chrX 36833301 36833442 -140140698 - MIR3 SINE MIR -11 197 54 180 246 53 18 chrX 36834486 36834543 -140139597 - MIR SINE MIR -115 147 89 2228 100 0 3 chrX 36835082 36835383 -140138757 - AluSq SINE Alu -13 300 1 345 368 88 0 chrX 36836009 36836180 -140137960 - MIR SINE MIR -14 248 63 1128 133 0 0 chrX 36837248 36837413 -140136727 + FRAM SINE Alu 1 165 -1 182 376 32 0 chrX 36837430 36837523 -140136617 - L2 LINE L2 -274 2998 2903 244 309 105 46 chrX 36837558 36837710 -140136430 + L2 LINE L2 3082 3242 -30 520 288 0 65 chrX 36837734 36837832 -140136308 - MIR SINE MIR -13 249 171 2368 82 0 0 chrX 36837832 36838135 -140136005 - AluSx SINE Alu -9 303 1 520 288 0 65 chrX 36838135 36838251 -140135889 - MIR SINE MIR -91 171 49 216 214 0 0 chrX 36838251 36838293 -140135847 + T-rich Low_complexity Low_complexity 1 42 0 412 300 8 17 chrX 36838319 36838439 -140135701 + MIR SINE MIR 34 152 -56 219 333 54 0 chrX 36839653 36839746 -140134394 + MIR SINE MIR 10 107 -155 1355 178 55 20 chrX 36840019 36840075 -140134065 - L1MC3 LINE L1 -2 7783 7730 2218 103 0 7 chrX 36840075 36840375 -140133765 + AluSx SINE Alu 1 298 -14 1355 178 55 20 chrX 36840375 36840790 -140133350 - L1MC3 LINE L1 -55 7730 5814 1329 148 0 130 chrX 36840806 36841130 -140133010 - AluSx SINE Alu -30 282 1 2014 117 7 13 chrX 36841165 36841465 -140132675 + AluSx SINE Alu 1 298 -14 653 194 25 90 chrX 36841487 36841588 -140132552 - L1MC2 LINE L1 -11 6333 6227 2251 83 7 0 chrX 36841588 36841920 -140132220 - AluSq SINE Alu 0 334 1 653 194 25 90 chrX 36841920 36841991 -140132149 - L1MC2 LINE L1 -117 6227 6171 2328 83 3 0 chrX 36841991 36842292 -140131848 - AluSq SINE Alu -11 302 1 653 194 25 90 chrX 36842292 36842317 -140131823 - L1MC2 LINE L1 -173 6171 6146 * 1488 161 68 7 chrX 36842304 36842614 -140131526 - L1MC3 LINE L1 -256 7529 7201 271 277 42 34 chrX 36842616 36842735 -140131405 - MLT1F1 LTR MaLR -434 133 14 2200 86 0 10 chrX 36842810 36843112 -140131028 - AluSq SINE Alu -14 299 1 5651 156 52 84 chrX 36843113 36843655 -140130485 - L1MC3 LINE L1 -1002 6783 6225 2428 64 0 3 chrX 36843655 36843967 -140130173 - AluY SINE Alu 0 311 1 5651 156 52 84 chrX 36843967 36844047 -140130093 - L1MC3 LINE L1 -1560 6225 6144 2168 94 7 10 chrX 36844047 36844344 -140129796 - AluSx SINE Alu -10 302 7 5651 156 52 84 chrX 36844344 36844363 -140129777 - L1MC3 LINE L1 -1641 6144 6126 2169 91 3 3 chrX 36844363 36844683 -140129457 - AluSx SINE Alu 0 320 1 5651 156 52 84 chrX 36844683 36844944 -140129196 - L1MC3 LINE L1 -1659 6126 5858 1680 148 24 24 chrX 36844944 36845235 -140128905 - AluJb SINE Alu -11 301 11 5651 156 52 84 chrX 36845235 36845821 -140128319 - L1MC3 LINE L1 -1927 5858 5339 3875 175 86 22 chrX 36845824 36846594 -140127546 + MER21B LTR ERV1 40 858 -5 2275 86 0 7 chrX 36847137 36847440 -140126700 + AluSx SINE Alu 1 301 -11 2465 60 0 0 chrX 36848489 36848791 -140125349 - AluY SINE Alu -9 302 1 1196 270 98 29 chrX 36848804 36849558 -140124582 - L2 LINE L2 -5 3308 2468 235 242 71 99 chrX 36852295 36852352 -140121788 + MIR SINE MIR 86 143 -119 2242 107 0 0 chrX 36852352 36852651 -140121489 + AluSx SINE Alu 1 299 -13 235 242 71 99 chrX 36852651 36852775 -140121365 + MIR SINE MIR 143 262 0 263 261 11 11 chrX 36855365 36855457 -140118683 + (TG)n Simple_repeat Simple_repeat 2 93 0 2251 92 0 0 chrX 36856620 36856915 -140117225 - AluSx SINE Alu -17 295 1 2139 105 0 3 chrX 36856926 36857221 -140116919 - AluSg SINE Alu -16 294 1 1136 37 7 0 chrX 36857222 36857358 -140116782 - AluSp SINE Alu -176 137 1 199 288 0 45 chrX 36857458 36857524 -140116616 - L2 LINE L2 0 3313 3251 319 227 23 11 chrX 36857587 36857675 -140116465 - L2 LINE L2 -1 3312 3224 208 253 160 0 chrX 36857738 36857813 -140116327 - L2 LINE L2 -2 3311 3225 1385 163 156 0 chrX 36857864 36858134 -140116006 - AluJo SINE Alu 0 312 1 226 262 21 124 chrX 36858239 36858384 -140115756 - MIR3 SINE MIR -76 132 3 207 0 0 0 chrX 36859657 36859680 -140114460 + (GCCTG)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chrX 36860210 36860233 -140113907 + (T)n Simple_repeat Simple_repeat 1 23 0 1308 137 40 0 chrX 36861188 36861414 -140112726 - AluSx SINE Alu -77 235 1 189 0 0 0 chrX 36862348 36862369 -140111771 + (TG)n Simple_repeat Simple_repeat 1 21 0 306 359 15 0 chrX 36863304 36863435 -140110705 + MIR SINE MIR 119 251 -11 372 160 10 175 chrX 36864225 36864425 -140109715 - L1MC5 LINE L1 -39 7922 7756 1336 49 0 12 chrX 36864474 36864637 -140109503 - AluSg SINE Alu -139 171 11 364 236 75 55 chrX 36864646 36864845 -140109295 - L1MC5 LINE L1 -426 7535 7333 2121 79 0 7 chrX 36865372 36865649 -140108491 + AluSg SINE Alu 1 275 -35 2321 99 0 0 chrX 36865746 36866048 -140108092 - AluSq SINE Alu -11 302 1 1856 90 0 0 chrX 36866242 36866486 -140107654 + AluY SINE Alu 2 245 -66 2196 122 0 3 chrX 36866589 36866900 -140107240 - AluSg SINE Alu 0 310 1 332 319 7 37 chrX 36867492 36867627 -140106513 + MIR SINE MIR 80 210 -52 1106 259 4 8 chrX 36867677 36867928 -140106212 + MIR SINE MIR 13 262 0 285 339 79 32 chrX 36867891 36868080 -140106060 - MIR SINE MIR -13 249 52 * 2221 113 0 0 chrX 36872009 36872309 -140101831 + AluSq SINE Alu 1 300 -13 1724 126 12 114 chrX 36872897 36873231 -140100909 + AluJo SINE Alu 1 300 -2 1678 80 9 4 chrX 36873277 36873503 -140100637 + AluSg/x SINE Alu 85 311 -1 2208 88 0 3 chrX 36873525 36873819 -140100321 - AluY SINE Alu -18 293 1 1761 176 0 13 chrX 36874168 36874480 -140099660 - AluJb SINE Alu -4 308 1 2157 99 3 13 chrX 36874508 36874811 -140099329 + AluSx SINE Alu 2 301 -11 1176 111 6 28 chrX 36874813 36874993 -140099147 + AluSg/x SINE Alu 135 310 0 373 227 0 0 chrX 36875179 36875254 -140098886 - HsTC2 DNA Tc2 -1823 75 1 277 294 203 43 chrX 36875256 36875532 -140098608 - MLT1L LTR MaLR -76 539 220 184 348 0 45 chrX 36876044 36876133 -140098007 + L2 LINE L2 3138 3222 -50 196 146 98 0 chrX 36880453 36880494 -140093646 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 36880680 36880733 -140093407 + GA-rich Low_complexity Low_complexity 2 54 0 1708 172 3 3 chrX 36880884 36881169 -140092971 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 36881169 36881202 -140092938 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 628 269 30 41 chrX 36881713 36881792 -140092348 + MIR SINE MIR 20 98 -164 2267 85 0 13 chrX 36881792 36882098 -140092042 - AluSx SINE Alu -10 302 1 628 269 30 41 chrX 36882098 36882215 -140091925 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 36882244 36882265 -140091875 + AT_rich Low_complexity Low_complexity 1 21 0 1940 157 3 0 chrX 36882285 36882591 -140091549 + AluJb SINE Alu 6 312 0 2358 97 3 0 chrX 36883590 36883900 -140090240 - AluSq SINE Alu -2 311 1 480 209 76 9 chrX 36883948 36884053 -140090087 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 36885102 36885127 -140089013 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 36885157 36885256 -140088884 + GA-rich Low_complexity Low_complexity 2 100 0 227 306 0 0 chrX 36885678 36885727 -140088413 - L2 LINE L2 -3 3310 3262 777 272 117 11 chrX 36886032 36886392 -140087748 - L2 LINE L2 -413 2901 2504 347 303 59 2 chrX 36886381 36886567 -140087573 - MIR SINE MIR -28 234 2 * 2041 123 0 3 chrX 36886645 36886938 -140087202 + AluJb SINE Alu 1 292 -20 1836 124 3 54 chrX 36886971 36887289 -140086851 + AluSx SINE Alu 1 303 0 634 336 33 0 chrX 36887290 36887564 -140086576 + L1MC/D LINE L1 5433 5715 -2093 918 273 28 12 chrX 36887718 36887967 -140086173 + MIR SINE MIR 7 259 -3 837 280 108 36 chrX 36887985 36888179 -140085961 - L1MC4a LINE L1 -1870 5938 5759 2036 101 0 44 chrX 36888179 36888495 -140085645 + AluSx SINE Alu 1 302 -10 837 280 108 36 chrX 36888495 36888772 -140085368 - L1MC4a LINE L1 -2049 5759 5433 2225 107 0 10 chrX 36888773 36889081 -140085059 - AluSx SINE Alu -7 305 1 196 344 109 16 chrX 36889112 36889304 -140084836 - L2 LINE L2 -1390 1924 1715 602 269 18 6 chrX 36889369 36889540 -140084600 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 36889757 36889791 -140084349 + GC_rich Low_complexity Low_complexity 1 34 0 449 340 63 59 chrX 36891335 36891993 -140082147 + L1M4c LINE L1 930 1721 -4592 357 351 40 7 chrX 36892420 36892568 -140081572 - L2 LINE L2 -21 3292 3140 296 267 79 109 chrX 36892632 36892730 -140081410 - L2 LINE L2 0 3313 3220 2110 72 65 0 chrX 36892730 36893008 -140081132 + AluSp SINE Alu 2 297 -16 296 267 79 109 chrX 36893008 36893074 -140081066 - L2 LINE L2 -93 3220 3154 348 291 7 73 chrX 36893174 36893325 -140080815 - L2 LINE L2 -8 3305 3165 834 212 6 0 chrX 36893361 36893526 -140080614 + MIR SINE MIR 91 256 -6 520 283 48 21 chrX 36894063 36894250 -140079890 + MIR SINE MIR 47 238 -24 416 273 38 38 chrX 36894562 36894694 -140079446 + MIR3 SINE MIR 7 138 -70 1250 265 30 56 chrX 36894697 36895005 -140079135 - L2 LINE L2 -5 3308 3014 2440 79 0 0 chrX 36895005 36895309 -140078831 + AluSc SINE Alu 1 304 -5 1250 265 30 56 chrX 36895309 36895461 -140078679 - L2 LINE L2 -299 3014 2860 214 204 330 0 chrX 36895457 36895545 -140078595 + MIR SINE MIR 143 259 -3 * 310 274 142 0 chrX 36896934 36897047 -140077093 + MIR SINE MIR 19 147 -61 549 311 62 0 chrX 36897088 36897281 -140076859 + MIR SINE MIR 33 237 -25 551 227 102 11 chrX 36897325 36897501 -140076639 + MIR SINE MIR 67 258 -4 2342 62 7 0 chrX 36897521 36897812 -140076328 + AluSp SINE Alu 1 293 -20 2159 134 0 0 chrX 36899199 36899535 -140074605 + AluJb SINE Alu 5 340 0 2366 97 0 0 chrX 36899538 36899847 -140074293 + AluSx SINE Alu 1 309 -3 295 235 385 0 chrX 36899998 36900185 -140073955 + L2 LINE L2 2485 2743 -571 622 176 38 94 chrX 36900185 36900344 -140073796 - AluJo SINE Alu -43 269 120 309 294 20 75 chrX 36900359 36900505 -140073635 + L2 LINE L2 3133 3270 -43 185 83 28 0 chrX 36900854 36900890 -140073250 + (TA)n Simple_repeat Simple_repeat 2 38 0 21 36 0 0 chrX 36903571 36903599 -140070541 + GC_rich Low_complexity Low_complexity 1 28 0 2346 66 13 0 chrX 36904098 36904399 -140069741 - AluSx SINE Alu -7 305 1 1106 148 21 11 chrX 36906548 36906737 -140067403 - AluJo SINE Alu -121 191 1 1539 241 73 33 chrX 36906788 36906895 -140067245 - L2 LINE L2 0 3313 3212 2301 88 10 0 chrX 36906895 36907189 -140066951 + AluSx SINE Alu 4 300 -12 1539 241 73 33 chrX 36907189 36907653 -140066487 - L2 LINE L2 -101 3212 2726 229 142 0 151 chrX 36907732 36907769 -140066371 + L1MC4 LINE L1 6614 6655 -1387 2223 102 3 0 chrX 36907769 36908064 -140066076 + AluSx SINE Alu 1 296 -16 2127 106 0 7 chrX 36908066 36908359 -140065781 + AluSp SINE Alu 1 291 -22 229 142 0 151 chrX 36908359 36908424 -140065716 + L1MC4 LINE L1 6656 6703 -1339 393 242 0 63 chrX 36908460 36908555 -140065585 + L1MC4 LINE L1 6614 6702 -1340 421 287 26 19 chrX 36908560 36908719 -140065421 - L1MC4 LINE L1 -1339 6983 1922 326 214 0 0 chrX 36908697 36908753 -140065387 - L1MC4 LINE L1 -1333 6989 6934 * 1859 145 0 0 chrX 36908759 36909035 -140065105 - AluJb SINE Alu -36 276 1 2393 233 86 46 chrX 36909035 36909789 -140064351 - L2 LINE L2 -777 2537 1748 2279 74 27 0 chrX 36909789 36910086 -140064054 + AluSx SINE Alu 1 305 -7 2393 233 86 46 chrX 36910086 36910120 -140064020 - L2 LINE L2 -1566 1748 1717 183 129 0 0 chrX 36914136 36914167 -140059973 + (CACCAT)n Simple_repeat Simple_repeat 3 33 0 1768 156 13 7 chrX 36914574 36914881 -140059259 - AluJo SINE Alu -3 309 1 355 244 57 16 chrX 36916007 36916031 -140058109 + MER91B DNA MER1_type 46 68 -122 2029 100 3 55 chrX 36916031 36916342 -140057798 - AluSx SINE Alu -17 295 1 355 244 57 16 chrX 36916342 36916440 -140057700 + MER91B DNA MER1_type 68 173 -17 626 269 24 18 chrX 36917115 36917282 -140056858 - MIR SINE MIR -35 227 60 583 242 113 60 chrX 36918548 36918669 -140055471 - MER46C DNA MER2_type -17 321 208 2369 72 7 0 chrX 36918669 36918973 -140055167 + AluSp SINE Alu 1 306 -7 583 242 113 60 chrX 36918973 36919039 -140055101 - MER46C DNA MER2_type -130 208 147 1864 152 0 52 chrX 36919039 36919184 -140054956 + AluJo SINE Alu 1 152 -160 2420 70 0 10 chrX 36919184 36919497 -140054643 + AluSg SINE Alu 1 310 0 1864 152 0 52 chrX 36919497 36919680 -140054460 + AluJo SINE Alu 152 312 0 583 242 113 60 chrX 36919680 36919793 -140054347 - MER46C DNA MER2_type -191 147 4 855 132 0 31 chrX 36919923 36920052 -140054088 + FLAM_C SINE Alu 1 125 -8 953 111 0 7 chrX 36920287 36920422 -140053718 - AluJo SINE Alu -178 134 1 200 328 0 0 chrX 36920425 36920486 -140053654 + MIR SINE MIR 83 143 -65 452 336 48 60 chrX 36920786 36921023 -140053117 + L2 LINE L2 2898 3136 -177 2363 90 6 0 chrX 36921023 36921334 -140052806 - AluSp SINE Alu 0 313 1 1836 173 20 0 chrX 36921334 36921635 -140052505 - AluJb SINE Alu -5 307 1 2360 79 0 0 chrX 36921640 36921943 -140052197 - AluSg1 SINE Alu -6 303 1 452 336 48 60 chrX 36921943 36922118 -140052022 + L2 LINE L2 3139 3312 -1 258 279 156 16 chrX 36922119 36922241 -140051899 + MIR SINE MIR 18 156 -106 2225 135 0 0 chrX 36927760 36928072 -140046068 + AluSx SINE Alu 1 312 0 184 406 31 0 chrX 36928312 36928408 -140045732 - MIR SINE MIR -96 166 68 1904 119 48 20 chrX 36929510 36929804 -140044336 + AluSg SINE Alu 1 302 -8 724 215 8 0 chrX 36929897 36930027 -140044113 - FLAM_C SINE Alu -2 131 1 981 181 6 0 chrX 36930038 36930209 -140043931 - FRAM SINE Alu -10 166 1 766 223 60 80 chrX 36930241 36930306 -140043834 - L1ME1 LINE L1 -55 6111 6046 1465 164 47 43 chrX 36930306 36930605 -140043535 + AluJo SINE Alu 1 300 -12 766 223 60 80 chrX 36930605 36930903 -140043237 - L1ME1 LINE L1 -120 6046 5755 911 192 112 69 chrX 36930905 36931181 -140042959 - AluJo SINE Alu -4 308 21 1099 186 46 65 chrX 36931183 36931237 -140042903 - L1ME1 LINE L1 -404 5762 5708 1295 197 51 109 chrX 36931237 36931263 -140042877 + MLT1B LTR MaLR 1 27 -363 183 42 0 0 chrX 36931263 36931287 -140042853 + (TA)n Simple_repeat Simple_repeat 2 25 0 1977 112 7 3 chrX 36931287 36931602 -140042538 - AluSq SINE Alu 0 316 1 1295 197 51 109 chrX 36931602 36931985 -140042155 + MLT1B LTR MaLR 25 388 -2 1099 186 46 65 chrX 36931985 36932136 -140042004 - L1ME1 LINE L1 -458 5708 5562 2089 81 10 39 chrX 36932136 36932444 -140041696 + AluSp SINE Alu 1 299 -14 1099 186 46 65 chrX 36932444 36932544 -140041596 - L1ME1 LINE L1 -604 5562 5462 1558 63 0 0 chrX 36934286 36934477 -140039663 - L1PA5 LINE L1 0 6154 5964 323 321 36 0 chrX 36935108 36935220 -140038920 + MIR SINE MIR 2 117 -145 2703 69 3 16 chrX 36935231 36935564 -140038576 + L1PA13 LINE L1 5805 6134 -29 1884 112 68 0 chrX 36935564 36935842 -140038298 - AluSx SINE Alu -15 297 1 2703 69 3 16 chrX 36935842 36935872 -140038268 + L1PA13 LINE L1 6134 6163 0 2269 92 0 19 chrX 36935878 36936218 -140037922 + AluY SINE Alu 1 311 0 2867 156 48 94 chrX 36936383 36936536 -140037604 - L1MB8 LINE L1 -1 6177 6018 1571 175 7 21 chrX 36936536 36936671 -140037469 + AluJb SINE Alu 2 137 -175 2192 112 0 13 chrX 36936671 36936984 -140037156 + AluSc SINE Alu 1 309 0 1571 175 7 21 chrX 36936984 36937133 -140037007 + AluJb SINE Alu 137 282 -30 279 79 0 0 chrX 36937133 36937171 -140036969 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1834 135 14 3 chrX 36937181 36937469 -140036671 - 7SLRNA srpRNA srpRNA -13 307 17 2867 156 48 94 chrX 36937469 36937989 -140036151 - L1MB8 LINE L1 -168 6010 5467 1769 151 0 33 chrX 36937989 36938288 -140035852 - AluSx SINE Alu -23 289 1 1974 141 10 0 chrX 36938297 36938596 -140035544 - AluSx SINE Alu -10 302 1 2867 156 48 94 chrX 36938596 36938712 -140035428 - L1MB8 LINE L1 -719 5459 5339 1969 147 79 108 chrX 36938712 36939006 -140035134 + MLT1D LTR MaLR 3 304 -201 1893 83 8 0 chrX 36939006 36939258 -140034882 + AluSq SINE Alu 52 305 -8 2379 53 40 0 chrX 36939260 36939559 -140034581 + AluY SINE Alu 1 311 0 1969 147 79 108 chrX 36939559 36939779 -140034361 + MLT1D LTR MaLR 305 505 0 2867 156 48 94 chrX 36939779 36939823 -140034317 - L1MB8 LINE L1 -838 5340 5360 317 207 17 0 chrX 36939829 36939887 -140034253 + L1MC4 LINE L1 6640 6698 -1344 2035 113 3 3 chrX 36939887 36940170 -140033970 - AluSx SINE Alu -29 283 1 2074 83 4 0 chrX 36940201 36940466 -140033674 - AluY SINE Alu -45 266 1 2253 100 0 0 chrX 36940466 36940756 -140033384 - AluSg SINE Alu -20 290 1 690 239 46 10 chrX 36940756 36941044 -140033096 - L1M4 LINE L1 -1970 4987 1996 325 259 12 0 chrX 36941047 36941126 -140033014 - LTR42 LTR ERVL 0 495 416 838 235 45 10 chrX 36941126 36941483 -140032657 + LTR2 LTR ERV1 1 401 -48 2435 111 5 13 chrX 36941486 36941874 -140032266 + Harlequin LTR ERV1 1 385 -6511 19072 164 15 2 chrX 36941942 36945328 -140028812 + Harlequin LTR ERV1 336 3740 -4073 1253 148 0 0 chrX 36945319 36945515 -140028625 - Harlequin LTR ERV1 -3061 4752 4557 * 985 168 0 0 chrX 36945530 36945691 -140028449 - Harlequin LTR ERV1 -5428 2385 2225 18468 150 6 21 chrX 36945712 36945827 -140028313 + Harlequin LTR ERV1 3736 3851 -3962 2404 69 0 3 chrX 36945827 36946130 -140028010 + AluY SINE Alu 1 302 -9 18468 150 6 21 chrX 36946130 36950168 -140023972 + Harlequin LTR ERV1 3851 7811 -2 1247 235 121 10 chrX 36950168 36950572 -140023568 + LTR2 LTR ERV1 1 449 0 570 202 18 0 chrX 36950572 36950681 -140023459 - LTR42 LTR ERVL -76 419 309 408 216 0 0 chrX 36950685 36950759 -140023381 - Harlequin LTR ERV1 -1322 5574 5501 2019 135 7 0 chrX 36950770 36951073 -140023067 - LTR42 LTR ERVL -190 305 1 324 184 40 13 chrX 36951074 36951150 -140022990 - L1M4 LINE L1 -4859 1996 1919 2316 111 3 0 chrX 36951158 36951456 -140022684 + AluSq SINE Alu 8 306 -7 2341 102 3 13 chrX 36951456 36951770 -140022370 + AluSx SINE Alu 1 311 -1 1200 144 0 0 chrX 36951779 36951959 -140022181 + AluSg/x SINE Alu 121 300 -10 1764 159 23 23 chrX 36951971 36952272 -140021868 + AluJo SINE Alu 1 301 -11 263 210 0 16 chrX 36952277 36952339 -140021801 - L1M4 LINE L1 -5034 1925 1865 1385 115 206 0 chrX 36952343 36952595 -140021545 + MER83B LTR ERV1 6 309 -69 2011 101 94 11 chrX 36952595 36952882 -140021258 - AluSp SINE Alu 0 313 3 31 0 0 0 chrX 36952884 36952915 -140021225 + AT_rich Low_complexity Low_complexity 1 31 0 669 89 0 0 chrX 36952915 36953005 -140021135 - AluS SINE Alu -221 92 3 2187 120 0 22 chrX 36953007 36953324 -140020816 - AluSx SINE Alu -2 310 1 2481 74 0 16 chrX 36953332 36953641 -140020499 - AluY SINE Alu -1 310 7 546 141 0 0 chrX 36953647 36953732 -140020408 + MER83B LTR ERV1 294 378 0 432 0 0 0 chrX 36953752 36953800 -140020340 + (TATG)n Simple_repeat Simple_repeat 1 48 0 786 233 6 84 chrX 36953827 36954093 -140020047 - L1M4 LINE L1 -4990 1865 1630 2472 64 0 10 chrX 36954093 36954390 -140019750 - AluY SINE Alu -16 295 2 786 233 6 84 chrX 36954390 36954466 -140019674 - L1M4 LINE L1 -5225 1630 1550 2316 103 0 31 chrX 36954479 36954513 -140019627 - AluSx SINE Alu -2 310 276 261 0 0 0 chrX 36954513 36954542 -140019598 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2316 103 0 31 chrX 36954542 36954827 -140019313 - AluSx SINE Alu -36 276 1 2208 108 7 10 chrX 36954829 36955134 -140019006 - AluSq SINE Alu -9 304 1 629 213 47 7 chrX 36955135 36955285 -140018855 - L1M4 LINE L1 -6693 166 11 302 322 81 35 chrX 36955292 36955466 -140018674 - L1ME3A LINE L1 0 6170 5989 1660 167 80 53 chrX 36955608 36955787 -140018353 + MSTB1 LTR MaLR 3 176 -252 2400 82 0 3 chrX 36955787 36956080 -140018060 + AluSc SINE Alu 1 292 -17 721 82 18 0 chrX 36956085 36956195 -140017945 + (GGAA)n Simple_repeat Simple_repeat 4 115 0 1660 167 80 53 chrX 36956195 36956416 -140017724 + MSTB1 LTR MaLR 179 418 -10 743 165 0 8 chrX 36956434 36956561 -140017579 + FLAM_C SINE Alu 2 127 -6 21 0 0 0 chrX 36956562 36956583 -140017557 + AT_rich Low_complexity Low_complexity 1 21 0 1033 204 108 9 chrX 36956599 36956830 -140017310 + AluJo SINE Alu 56 309 -3 2348 110 3 0 chrX 36956836 36957146 -140016994 + AluSp SINE Alu 1 311 -2 2042 134 3 10 chrX 36957149 36957462 -140016678 + AluSx SINE Alu 1 311 -1 2353 81 0 3 chrX 36957472 36957804 -140016336 + AluSx SINE Alu 2 332 0 1137 154 23 64 chrX 36957867 36958087 -140016053 - AluJo SINE Alu -67 245 35 2390 101 7 0 chrX 36958093 36958400 -140015740 - AluSq SINE Alu -4 309 1 2405 82 0 25 chrX 36958411 36958440 -140015700 - AluSq SINE Alu -3 310 282 372 22 0 0 chrX 36958440 36958485 -140015655 + (TG)n Simple_repeat Simple_repeat 1 45 0 2405 82 0 25 chrX 36958485 36958773 -140015367 - AluSq SINE Alu -31 282 1 331 328 41 32 chrX 36958773 36958923 -140015217 - L1M4 LINE L1 -780 5366 5219 1472 122 0 28 chrX 36958923 36959081 -140015059 - AluJb SINE Alu -23 289 128 209 30 61 0 chrX 36959081 36959114 -140015026 + T-rich Low_complexity Low_complexity 2 36 0 2290 100 0 0 chrX 36959114 36959395 -140014745 - AluSg SINE Alu -29 281 1 1472 122 0 28 chrX 36959395 36959449 -140014691 - AluJb SINE Alu -182 130 82 331 328 41 32 chrX 36959449 36959490 -140014650 - L1M4 LINE L1 -927 5219 5158 637 214 0 0 chrX 36959973 36960099 -140014041 - FLAM_A SINE Alu -7 135 10 2259 92 7 0 chrX 36960140 36960423 -140013717 + AluSx SINE Alu 9 293 -19 975 255 0 4 chrX 36960683 36960918 -140013222 + L1MD3 LINE L1 7426 7659 -336 2273 115 7 0 chrX 36960924 36961219 -140012921 + AluSx SINE Alu 1 297 -15 1549 78 11 0 chrX 36961219 36961410 -140012730 + AluSg SINE Alu 1 193 -117 2498 79 0 0 chrX 36961411 36961714 -140012426 - AluY SINE Alu -8 303 1 871 108 0 16 chrX 36961715 36961844 -140012296 + AluSg SINE Alu 183 309 -1 2218 96 0 10 chrX 36961864 36962157 -140011983 + AluY SINE Alu 1 290 -21 554 133 0 0 chrX 36962171 36962254 -140011886 - AluSg/x SINE Alu -17 295 213 818 172 0 0 chrX 36962254 36962382 -140011758 - FRAM SINE Alu -44 132 5 2053 153 3 0 chrX 36962598 36962932 -140011208 - AluSx SINE Alu 0 312 1 2014 140 0 0 chrX 36962962 36963241 -140010899 + AluSx SINE Alu 9 287 -25 278 67 22 0 chrX 36963241 36963286 -140010854 + (TA)n Simple_repeat Simple_repeat 2 47 0 914 180 6 17 chrX 36963529 36963707 -140010433 - FRAM SINE Alu 0 176 1 2215 129 0 16 chrX 36963738 36964055 -140010085 - AluSx SINE Alu 0 312 1 1592 177 0 4 chrX 36964217 36964482 -140009658 - AluJb SINE Alu -47 265 2 2429 109 0 0 chrX 36964557 36964869 -140009271 - AluSx SINE Alu 0 312 1 2300 88 17 0 chrX 36964948 36965242 -140008898 - AluSx SINE Alu 0 312 14 2393 101 3 0 chrX 36965258 36965564 -140008576 - AluSx SINE Alu -1 311 5 233 75 25 0 chrX 36965566 36965606 -140008534 - Alu SINE Alu -166 137 97 1070 155 0 6 chrX 36965676 36965844 -140008296 - FRAM SINE Alu -17 159 1 207 189 0 0 chrX 36965884 36965921 -140008219 + L2 LINE L2 3270 3306 -7 2457 84 0 3 chrX 36966000 36966310 -140007830 + AluSc SINE Alu 1 309 0 186 244 85 0 chrX 36967143 36967225 -140006915 - L2 LINE L2 -1017 2297 2209 1333 200 99 9 chrX 36968039 36968411 -140005729 - L2 LINE L2 -332 2981 2574 2280 122 0 3 chrX 36968783 36969095 -140005045 - AluSx SINE Alu -1 311 1 788 239 26 77 chrX 36969170 36969276 -140004864 + L2 LINE L2 2358 2468 -846 2339 103 0 0 chrX 36969276 36969578 -140004562 + AluSx SINE Alu 1 302 -10 788 239 26 77 chrX 36969578 36969781 -140004359 + L2 LINE L2 2468 2651 -663 996 268 156 22 chrX 36969786 36970259 -140003881 + L2 LINE L2 2777 3312 -1 430 213 32 0 chrX 36970739 36970833 -140003307 + MIR SINE MIR 108 204 -58 838 153 16 0 chrX 36970833 36970957 -140003183 + FLAM_C SINE Alu 1 126 -17 2471 77 6 19 chrX 36970983 36971296 -140002844 + AluY SINE Alu 1 309 -2 709 244 85 29 chrX 36971372 36971472 -140002668 + MER46C DNA MER2_type 1 94 -244 2347 123 0 0 chrX 36971472 36971782 -140002358 - AluSx SINE Alu -2 310 1 709 244 85 29 chrX 36971782 36971927 -140002213 + MER46C DNA MER2_type 94 260 -78 314 138 0 17 chrX 36971927 36971985 -140002155 - MER116 DNA Mariner 0 80 24 2218 109 0 0 chrX 36972018 36972326 -140001814 + AluSq SINE Alu 1 308 0 2319 111 7 0 chrX 36974703 36975009 -139999131 - AluSg SINE Alu -2 308 1 239 103 26 0 chrX 36975010 36975049 -139999091 - L1MD3 LINE L1 -1059 6936 6897 1764 169 0 24 chrX 36975049 36975216 -139998924 - AluJo SINE Alu -29 283 124 2312 106 3 0 chrX 36975216 36975517 -139998623 + AluSq SINE Alu 1 302 -11 1764 169 0 24 chrX 36975517 36975639 -139998501 - AluJo SINE Alu -188 124 1 2027 135 0 30 chrX 36976427 36976731 -139997409 + AluSx SINE Alu 5 299 -13 813 150 0 46 chrX 36976854 36977007 -139997133 - AluJo SINE Alu -19 283 138 21 0 0 0 chrX 36977988 36978009 -139996131 + AT_rich Low_complexity Low_complexity 1 21 0 889 143 7 36 chrX 36978009 36978149 -139995991 - AluJo SINE Alu -176 136 1 2516 91 0 0 chrX 36978156 36978464 -139995676 - AluSg SINE Alu -2 308 1 319 301 0 0 chrX 36978640 36978723 -139995417 - L2 LINE L2 -4 3309 3227 1145 262 97 4 chrX 36978728 36979209 -139994931 - L2 LINE L2 -22 3291 2752 1211 123 32 21 chrX 36979398 36979585 -139994555 - AluJb SINE Alu -9 303 115 2389 103 0 0 chrX 36979585 36979885 -139994255 + AluSx SINE Alu 1 300 -12 745 166 58 0 chrX 36979894 36980033 -139994107 + MLT1A1 LTR MaLR 55 201 -164 2707 53 0 0 chrX 36980104 36980407 -139993733 + AluY SINE Alu 1 303 -8 1263 183 101 8 chrX 36980414 36980671 -139993469 - MSTD LTR MaLR -2 394 114 646 173 60 0 chrX 36980696 36980829 -139993311 - MLT1B LTR MaLR -46 344 204 234 0 0 0 chrX 36980838 36980864 -139993276 + (TC)n Simple_repeat Simple_repeat 2 27 0 248 208 0 0 chrX 36980874 36980922 -139993218 - MSTD LTR MaLR -334 94 47 2096 125 0 0 chrX 36980924 36981203 -139992937 - AluSx SINE Alu -7 305 27 1818 178 26 0 chrX 36981284 36981587 -139992553 - AluJo SINE Alu -1 311 1 2334 93 23 0 chrX 36981592 36981894 -139992246 - AluSx SINE Alu -3 309 1 663 234 31 92 chrX 36981905 36981969 -139992171 - MIR SINE MIR -10 252 186 2040 96 0 86 chrX 36981969 36982313 -139991827 - AluSx SINE Alu 0 317 1 663 234 31 92 chrX 36982313 36982507 -139991633 - MIR SINE MIR -76 186 8 431 313 89 16 chrX 36982562 36982808 -139991332 - L1ME3 LINE L1 -335 5827 5564 724 243 26 31 chrX 36983299 36983499 -139990641 - MIR SINE MIR 0 262 61 1608 193 7 26 chrX 36983558 36983864 -139990276 - AluJo SINE Alu -12 300 1 24 0 0 0 chrX 36984013 36984037 -139990103 + AT_rich Low_complexity Low_complexity 1 24 0 1556 176 0 24 chrX 36984037 36984292 -139989848 - AluJb SINE Alu -33 279 31 192 111 0 0 chrX 36984432 36984468 -139989672 + (TATG)n Simple_repeat Simple_repeat 2 37 0 1977 144 7 3 chrX 36984468 36984752 -139989388 - AluSx SINE Alu -27 285 1 1270 124 0 6 chrX 36984752 36984929 -139989211 - AluSg/x SINE Alu -3 306 131 1883 154 20 10 chrX 36984930 36985229 -139988911 - AluSx SINE Alu -10 302 1 2435 74 0 0 chrX 36985236 36985566 -139988574 - AluSx SINE Alu 0 330 1 1872 182 0 10 chrX 36985843 36986150 -139987990 - AluJo SINE Alu -8 304 1 271 161 74 37 chrX 36986455 36986501 -139987639 - MER20B DNA MER1_type -6 777 725 2569 66 3 0 chrX 36986501 36986802 -139987338 + AluSp SINE Alu 1 302 -11 271 161 74 37 chrX 36986802 36986836 -139987304 - MER20B DNA MER1_type -58 725 694 235 347 71 0 chrX 36986951 36987049 -139987091 + L2 LINE L2 3166 3270 -2 326 317 150 6 chrX 36987297 36987464 -139986676 + MIR SINE MIR 15 205 -57 2680 42 0 6 chrX 36989119 36989430 -139984710 + AluY SINE Alu 1 309 -2 2678 61 0 0 chrX 36989844 36990155 -139983985 - AluY SINE Alu 0 311 1 2292 99 3 0 chrX 36990320 36990613 -139983527 - AluSx SINE Alu -18 294 1 1620 193 7 0 chrX 36990848 36991128 -139983012 - AluJo SINE Alu -30 282 1 2118 136 0 3 chrX 36991137 36991439 -139982701 - AluSx SINE Alu -10 302 2 1323 172 31 4 chrX 36991466 36991693 -139982447 + AluJo SINE Alu 64 296 -16 2332 113 0 3 chrX 36991695 36992005 -139982135 + AluSq SINE Alu 1 309 -4 2327 96 3 3 chrX 36992025 36992327 -139981813 + AluSx SINE Alu 1 302 -10 239 174 0 0 chrX 36992349 36992395 -139981745 + Alu SINE Alu 254 299 -4 2143 102 49 0 chrX 36992616 36992900 -139981240 + AluSc SINE Alu 1 298 -11 938 199 6 0 chrX 36992911 36993072 -139981068 + AluJb SINE Alu 137 298 -14 1769 179 13 3 chrX 36993123 36993425 -139980715 + AluJo SINE Alu 1 305 -7 315 206 0 59 chrX 36993569 36993585 -139980555 + AluSc SINE Alu 118 133 -166 2185 100 10 26 chrX 36993585 36993895 -139980245 + AluSg SINE Alu 1 305 -5 2519 65 0 0 chrX 36993895 36994188 -139979952 + AluY SINE Alu 1 293 -18 315 206 0 59 chrX 36994188 36994238 -139979902 + AluSc SINE Alu 131 181 -118 1104 189 32 0 chrX 36994240 36994425 -139979715 - AluJo SINE Alu -121 191 1 1472 96 5 0 chrX 36994567 36994754 -139979386 + AluSp SINE Alu 1 188 -125 563 143 0 0 chrX 36994754 36994845 -139979295 - AluS SINE Alu -220 92 2 326 291 90 8 chrX 36994886 36995020 -139979120 - L2 LINE L2 0 3313 3169 287 45 68 0 chrX 36995132 36995176 -139978964 + AluJb SINE Alu 87 133 -169 2106 137 7 0 chrX 36995176 36995468 -139978672 - AluSx SINE Alu -18 294 1 1669 108 0 0 chrX 36995593 36995805 -139978335 + AluSg/x SINE Alu 81 292 -20 1829 153 10 35 chrX 36995814 36996128 -139978012 + AluJo SINE Alu 1 306 -6 996 200 238 0 chrX 36996128 36996363 -139977777 + AluSp SINE Alu 1 291 -12 1931 78 108 0 chrX 36996446 36996715 -139977425 + AluSg SINE Alu 1 298 -12 1540 253 78 5 chrX 36996775 36997213 -139976927 + MER119 DNA MER1_type 3 472 -111 554 174 60 40 chrX 36997294 36997443 -139976697 - L1ME1 LINE L1 -70 6096 5945 2265 64 34 0 chrX 36997511 36997807 -139976333 - AluY SINE Alu -4 307 2 2866 9 0 0 chrX 36997871 36998189 -139975951 - AluYb8 SINE Alu 0 318 1 2251 104 0 0 chrX 36998191 36998488 -139975652 - AluSx SINE Alu -5 307 11 2093 71 46 11 chrX 36998534 36998817 -139975323 + AluY SINE Alu 1 293 -18 2029 119 7 7 chrX 36998828 36999113 -139975027 + AluSq SINE Alu 10 294 -19 1316 172 18 85 chrX 36999162 36999294 -139974846 - L1MB2 LINE L1 0 6171 6032 1934 117 14 3 chrX 36999294 36999584 -139974556 + AluSx SINE Alu 1 293 -19 1316 172 18 85 chrX 36999584 36999840 -139974300 - L1MB2 LINE L1 -139 6032 5814 1188 191 38 0 chrX 36999841 37000051 -139974089 - AluSg/x SINE Alu 0 312 95 * 1395 138 0 0 chrX 37000050 37000253 -139973887 + AluSg/x SINE Alu 86 288 -22 681 161 55 81 chrX 37000253 37000356 -139973784 - L1M4 LINE L1 -5370 1172 1068 2219 112 0 0 chrX 37000356 37000652 -139973488 - AluSx SINE Alu -16 296 1 681 161 55 81 chrX 37000652 37000784 -139973356 - L1M4 LINE L1 -5474 1068 943 676 194 15 8 chrX 37000784 37000918 -139973222 - FRAM SINE Alu -4 172 38 1985 229 21 19 chrX 37000939 37001220 -139972920 - L1M4 LINE L1 -5589 953 669 2166 120 0 9 chrX 37001220 37001536 -139972604 - AluSq SINE Alu 0 313 1 1985 229 21 19 chrX 37001536 37001738 -139972402 - L1M4 LINE L1 -5873 669 469 785 167 0 129 chrX 37001738 37001924 -139972216 - AluJb SINE Alu -12 300 139 529 257 82 6 chrX 37001924 37002107 -139972033 + L2 LINE L2 1993 2189 -1125 1069 173 11 0 chrX 37002107 37002284 -139971856 - AluSg/x SINE Alu 0 312 131 2126 107 3 3 chrX 37002284 37002582 -139971558 - AluSq SINE Alu -15 298 1 1069 173 11 0 chrX 37002582 37002595 -139971545 - AluSg/x SINE Alu -181 131 120 189 94 0 0 chrX 37002595 37002627 -139971513 + (A)n Simple_repeat Simple_repeat 1 32 0 437 113 0 0 chrX 37002672 37002734 -139971406 + AluJ/FLAM SINE Alu 1 62 -250 583 171 7 59 chrX 37002748 37002767 -139971373 + LTR23 LTR ERV1 3 21 -416 2080 137 3 0 chrX 37002767 37003073 -139971067 + AluSx SINE Alu 3 309 -3 583 171 7 59 chrX 37003073 37003205 -139970935 + LTR23 LTR ERV1 21 146 -291 2287 87 0 0 chrX 37003205 37003494 -139970646 + AluSq SINE Alu 1 289 -24 249 122 0 0 chrX 37003494 37003535 -139970605 + MER41B LTR ERV1 595 635 0 1779 162 0 13 chrX 37003779 37004088 -139970052 - AluJb SINE Alu -7 305 1 400 202 0 0 chrX 37004088 37004187 -139969953 - L1MEc LINE L1 -5557 839 741 2070 235 51 43 chrX 37004200 37004746 -139969394 - L1MEc LINE L1 -5702 694 141 2075 108 10 10 chrX 37004746 37005043 -139969097 + AluSx SINE Alu 1 297 -15 2070 235 51 43 chrX 37005043 37005142 -139968998 - L1MEc LINE L1 -6255 141 44 758 132 66 8 chrX 37005153 37005274 -139968866 - FLAM_C SINE Alu -15 128 1 394 369 172 10 chrX 37005290 37005628 -139968512 - L2 LINE L2 -896 2418 2136 2285 105 0 13 chrX 37005628 37005762 -139968378 + AluSg SINE Alu 1 135 -175 2510 50 0 0 chrX 37005762 37006059 -139968081 + AluSg SINE Alu 1 297 -13 2285 105 0 13 chrX 37006059 37006237 -139967903 + AluSg SINE Alu 135 309 -1 394 369 172 10 chrX 37006237 37006502 -139967638 - L2 LINE L2 -1178 2136 1717 977 108 29 0 chrX 37006767 37006906 -139967234 - U4 snRNA snRNA -1 144 2 1021 122 10 61 chrX 37006909 37006929 -139967211 - AluSg/x SINE Alu -9 303 284 2027 112 13 7 chrX 37006929 37007234 -139966906 - AluSq SINE Alu -6 307 1 1021 122 10 61 chrX 37007234 37007390 -139966750 - AluSg/x SINE Alu -28 284 135 2298 84 0 3 chrX 37007390 37007687 -139966453 - AluSg SINE Alu -14 296 1 1021 122 10 61 chrX 37007687 37007705 -139966435 - AluSg/x SINE Alu -177 135 118 2210 73 3 38 chrX 37007730 37008046 -139966094 + AluSp SINE Alu 1 305 -8 2342 90 0 0 chrX 37008191 37008503 -139965637 + AluSx SINE Alu 1 312 0 2179 122 0 0 chrX 37010390 37010694 -139963446 - AluSx SINE Alu -8 304 1 188 239 0 0 chrX 37011463 37011509 -139962631 - L2 LINE L2 -5 3308 3263 949 186 0 6 chrX 37011510 37011682 -139962458 - MIR SINE MIR -20 242 72 403 318 9 14 chrX 37011861 37012018 -139962122 + MIR3 SINE MIR 17 171 -49 240 312 54 11 chrX 37014386 37014479 -139959661 - L2 LINE L2 -182 3090 2994 1637 173 18 3 chrX 37017934 37018217 -139955923 + AluJo SINE Alu 1 287 -25 1539 160 26 67 chrX 37018217 37018336 -139955804 + AluJb SINE Alu 2 124 -188 2210 73 13 17 chrX 37018336 37018638 -139955502 - AluSg SINE Alu -9 301 1 1539 160 26 67 chrX 37018638 37018831 -139955309 + AluJb SINE Alu 124 301 -11 2121 88 35 0 chrX 37019276 37019559 -139954581 + AluSg SINE Alu 1 293 -17 201 292 0 15 chrX 37020539 37020604 -139953536 + GA-rich Low_complexity Low_complexity 5 68 0 200 196 109 0 chrX 37022360 37022406 -139951734 + L2 LINE L2 3187 3237 -76 953 228 91 9 chrX 37022440 37022672 -139951468 + MIR SINE MIR 2 252 -10 213 143 0 0 chrX 37022710 37022745 -139951395 - MIR SINE MIR -108 154 120 2327 81 0 19 chrX 37022811 37023121 -139951019 - AluSq SINE Alu -9 304 1 419 281 127 20 chrX 37025418 37025671 -139948469 - MER46C DNA MER2_type -36 302 23 2109 77 46 11 chrX 37025696 37025845 -139948295 - AluSp SINE Alu -18 295 153 2521 56 0 0 chrX 37025845 37026149 -139947991 - AluY SINE Alu -7 304 1 2109 77 46 11 chrX 37026149 37026284 -139947856 - AluSp SINE Alu -160 153 1 380 243 99 0 chrX 37027186 37027297 -139946843 - MIR SINE MIR -57 205 84 194 314 179 0 chrX 37027298 37027438 -139946702 + L2 LINE L2 2807 2971 -343 300 330 26 9 chrX 37027553 37027668 -139946472 + L2 LINE L2 3197 3313 0 2191 115 3 10 chrX 37028606 37028919 -139945221 - AluSx SINE Alu -1 311 1 849 203 0 25 chrX 37030239 37030402 -139943738 + AluJo SINE Alu 1 159 -153 300 227 0 80 chrX 37030877 37030952 -139943188 - MIR SINE MIR -55 153 85 333 68 0 0 chrX 37031177 37031221 -139942919 + (CCA)n Simple_repeat Simple_repeat 2 45 0 183 225 0 0 chrX 37031669 37031709 -139942431 + MIR SINE MIR 110 145 -63 952 152 88 34 chrX 37032024 37032228 -139941912 + MIR SINE MIR 46 260 -2 2468 69 0 0 chrX 37032412 37032717 -139941423 - AluSg1 SINE Alu -4 305 1 21 0 0 0 chrX 37035386 37035407 -139938733 + GC_rich Low_complexity Low_complexity 1 21 0 2132 115 0 3 chrX 37036632 37036927 -139937213 + AluSx SINE Alu 1 294 -18 2389 91 0 0 chrX 37037002 37037309 -139936831 + AluSx SINE Alu 6 312 0 1029 204 84 14 chrX 37037317 37037601 -139936539 - L1MB8 LINE L1 -81 6097 5794 2364 84 3 0 chrX 37038064 37038375 -139935765 - AluSp SINE Alu -1 312 1 570 186 0 172 chrX 37038729 37038795 -139935345 - MLT1D LTR MaLR 0 505 429 2315 91 3 0 chrX 37038795 37039102 -139935038 + AluSc SINE Alu 1 308 -1 570 186 0 172 chrX 37039102 37039134 -139935006 - MLT1D LTR MaLR -76 429 393 1657 123 37 60 chrX 37039134 37039399 -139934741 + AluSx SINE Alu 12 271 -41 198 0 0 0 chrX 37039399 37039421 -139934719 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 1657 123 37 60 chrX 37039421 37039455 -139934685 + AluSx SINE Alu 271 304 -8 570 186 0 172 chrX 37039455 37039556 -139934584 - MLT1D LTR MaLR -112 393 340 1447 124 76 55 chrX 37039556 37039846 -139934294 + MER1B DNA MER1_type 1 296 -43 2069 114 0 0 chrX 37039848 37040157 -139933983 + AluSx SINE Alu 1 309 0 739 192 21 65 chrX 37040180 37040412 -139933728 - MLT1D LTR MaLR -198 269 47 1143 147 0 0 chrX 37040412 37040582 -139933558 + AluJb SINE Alu 132 301 -11 1895 142 14 0 chrX 37040591 37040880 -139933260 + AluSx SINE Alu 1 293 -19 2220 93 0 13 chrX 37040887 37041198 -139932942 + AluY SINE Alu 1 307 -4 648 118 0 0 chrX 37041660 37041753 -139932387 + AluSg/x SINE Alu 215 307 -3 2192 112 3 10 chrX 37041822 37042136 -139932004 + AluSx SINE Alu 1 312 0 2417 65 7 3 chrX 37042150 37042457 -139931683 + AluY SINE Alu 3 310 -1 1649 162 3 65 chrX 37042672 37042852 -139931288 - AluJo SINE Alu -11 301 148 2394 77 0 16 chrX 37042852 37043165 -139930975 - AluSc SINE Alu -1 308 1 1649 162 3 65 chrX 37043165 37043305 -139930835 - AluJo SINE Alu -164 148 1 2277 89 0 7 chrX 37043345 37043647 -139930493 - AluSx SINE Alu -12 300 1 2071 87 7 20 chrX 37043648 37043948 -139930192 - AluSx SINE Alu -16 296 1 2397 68 3 3 chrX 37044038 37044346 -139929794 - AluSx SINE Alu -4 308 1 224 271 34 0 chrX 37044623 37044682 -139929458 + L2 LINE L2 3212 3272 0 465 283 44 13 chrX 37044687 37044846 -139929294 - MIR SINE MIR -6 256 93 185 128 0 26 chrX 37045574 37045613 -139928527 + (GGA)n Simple_repeat Simple_repeat 1 38 0 2449 85 0 0 chrX 37047835 37048129 -139926011 + AluSc SINE Alu 1 294 -15 2430 97 0 0 chrX 37051350 37051649 -139922491 - AluSg SINE Alu -11 299 1 2132 128 23 10 chrX 37051740 37052046 -139922094 - AluSx SINE Alu -2 310 1 2183 131 3 0 chrX 37052239 37052545 -139921595 - AluSg SINE Alu -3 307 1 2392 88 3 19 chrX 37052565 37052883 -139921257 - AluSq SINE Alu 0 313 1 2027 146 3 3 chrX 37052885 37053180 -139920960 - AluJb SINE Alu -17 295 1 2636 52 0 3 chrX 37053362 37053667 -139920473 + AluY SINE Alu 1 304 -7 2230 101 0 42 chrX 37053705 37054049 -139920091 - AluSx SINE Alu 0 312 1 461 125 0 0 chrX 37055870 37055942 -139918198 - AluS SINE Alu -6 304 233 1371 117 0 29 chrX 37055976 37056113 -139918027 + AluSx SINE Alu 1 132 -180 2110 110 31 7 chrX 37056113 37056405 -139917735 + AluSg SINE Alu 1 299 -11 1371 117 0 29 chrX 37056405 37056472 -139917668 + AluSx SINE Alu 132 199 -113 492 103 0 0 chrX 37056473 37056541 -139917599 + AluSc SINE Alu 66 133 -176 2121 113 0 47 chrX 37056541 37056859 -139917281 + AluSx SINE Alu 1 303 -9 964 314 60 22 chrX 37056863 37057316 -139916824 - L2 LINE L2 -18 3295 2826 206 182 0 23 chrX 37057811 37057855 -139916285 + (TAA)n Simple_repeat Simple_repeat 3 45 0 606 266 21 84 chrX 37057859 37057970 -139916170 - MIR SINE MIR 0 262 171 2362 65 25 0 chrX 37057970 37058275 -139915865 - AluSp SINE Alu 0 312 1 606 266 21 84 chrX 37058275 37058399 -139915741 - MIR SINE MIR -91 171 41 439 309 50 53 chrX 37058676 37058819 -139915321 + L1M4 LINE L1 4189 4331 -1815 2152 123 7 0 chrX 37058819 37059121 -139915019 + AluSg1 SINE Alu 3 306 -3 439 309 50 53 chrX 37059121 37059278 -139914862 + L1M4 LINE L1 4331 4488 -1658 1359 163 0 46 chrX 37059987 37060226 -139913914 + AluJo SINE Alu 85 312 0 12681 110 8 53 chrX 37060236 37063057 -139911083 + L1P3 LINE L1 7 2810 -3651 1059 96 0 7 chrX 37063058 37063193 -139910947 + AluY SINE Alu 1 134 -177 2455 62 0 3 chrX 37063193 37063535 -139910605 + AluY SINE Alu 1 311 0 8261 95 2 0 chrX 37063535 37064755 -139909385 + L1P3 LINE L1 2802 4024 -2437 904 131 6 25 chrX 37064785 37064945 -139909195 + L1MC1 LINE L1 6177 6333 0 1709 211 60 76 chrX 37064962 37065271 -139908869 + L1M4 LINE L1 3520 3832 -2314 1888 150 18 0 chrX 37065271 37065585 -139908555 + AluSx SINE Alu 1 319 0 1709 211 60 76 chrX 37065585 37065789 -139908351 + L1M4 LINE L1 3832 4025 -2121 2437 70 3 3 chrX 37065789 37066087 -139908053 - AluY SINE Alu -13 298 1 1709 211 60 76 chrX 37066087 37066191 -139907949 + L1M4 LINE L1 4025 4129 -2017 1611 135 8 8 chrX 37066195 37066432 -139907708 + AluJb SINE Alu 1 237 -75 473 270 73 21 chrX 37066435 37066648 -139907492 + L1ME1 LINE L1 5937 6139 -27 1969 149 7 0 chrX 37066693 37067001 -139907139 - AluJb SINE Alu -2 310 1 756 229 108 8 chrX 37067055 37067295 -139906845 - L1ME3A LINE L1 -218 5952 5689 183 156 0 0 chrX 37068412 37068444 -139905696 + GA-rich Low_complexity Low_complexity 3 34 0 2204 114 7 0 chrX 37069087 37069377 -139904763 + AluSx SINE Alu 1 292 -20 435 19 0 0 chrX 37069378 37069430 -139904710 + (GA)n Simple_repeat Simple_repeat 1 52 0 1965 146 14 0 chrX 37069436 37069716 -139904424 + AluJb SINE Alu 1 284 -28 381 296 56 0 chrX 37069827 37069989 -139904151 - MIR SINE MIR 0 262 92 190 176 0 0 chrX 37069977 37070011 -139904129 + MIR SINE MIR 69 102 -160 * 232 278 28 0 chrX 37070151 37070223 -139903917 - MIR SINE MIR -112 150 77 2308 101 0 3 chrX 37070634 37070932 -139903208 - AluSx SINE Alu -15 297 1 539 185 129 138 chrX 37070952 37071292 -139902848 - L1ME3A LINE L1 -66 6104 5768 669 306 127 35 chrX 37071423 37071568 -139902572 - L1ME3A LINE L1 -946 5200 5070 1994 113 55 10 chrX 37071568 37071860 -139902280 - AluSg SINE Alu -5 305 1 669 306 127 35 chrX 37071860 37072311 -139901829 - L1ME3A LINE L1 -1076 5070 4549 1015 254 74 7 chrX 37072316 37072615 -139901525 - L2 LINE L2 -1247 2067 1749 24 0 0 0 chrX 37073247 37073271 -139900869 + AT_rich Low_complexity Low_complexity 1 24 0 191 171 24 0 chrX 37075160 37075201 -139898939 + L2 LINE L2 2501 2542 -772 1009 75 46 52 chrX 37075201 37075224 -139898916 + L1MA2 LINE L1 6132 6154 -150 2069 118 42 0 chrX 37075224 37075512 -139898628 + AluSx SINE Alu 1 300 -12 1009 75 46 52 chrX 37075512 37075662 -139898478 + L1MA2 LINE L1 6154 6304 0 28 0 0 0 chrX 37075662 37075690 -139898450 + AT_rich Low_complexity Low_complexity 1 28 0 767 210 0 7 chrX 37075764 37075907 -139898233 + L1MC4 LINE L1 6701 6842 -1200 2385 99 3 6 chrX 37075908 37076297 -139897843 + AluSx SINE Alu 1 388 0 300 261 120 0 chrX 37076302 37076394 -139897746 + L1M4 LINE L1 3073 3175 -2971 1221 186 40 108 chrX 37076397 37076842 -139897298 + L1MC5 LINE L1 6749 7163 -798 213 98 0 82 chrX 37076900 37076961 -139897179 + (TTAA)n Simple_repeat Simple_repeat 1 56 0 710 228 172 12 chrX 37076988 37077238 -139896902 + L1MC5 LINE L1 7397 7686 -275 393 113 0 0 chrX 37077260 37077313 -139896827 + Alu SINE Alu 1 53 -247 859 116 322 0 chrX 37077318 37077464 -139896676 + AluSg/x SINE Alu 105 297 -12 664 197 64 32 chrX 37077465 37077683 -139896457 + L1MC5 LINE L1 7701 7925 -36 261 0 0 0 chrX 37077686 37077715 -139896425 + (CA)n Simple_repeat Simple_repeat 1 29 0 1156 272 81 17 chrX 37077715 37078226 -139895914 + L2 LINE L2 2563 3133 -180 441 0 0 0 chrX 37078226 37078275 -139895865 + (CA)n Simple_repeat Simple_repeat 2 50 0 1156 272 81 17 chrX 37078275 37078469 -139895671 + L2 LINE L2 3133 3313 0 1897 159 7 0 chrX 37078881 37079171 -139894969 - AluJb SINE Alu -20 292 1 442 227 85 11 chrX 37079457 37079633 -139894507 - L1ME4a LINE L1 -8 6113 5925 245 298 193 0 chrX 37079662 37079843 -139894297 - L1ME4a LINE L1 -276 5845 5630 2202 125 0 3 chrX 37079872 37080169 -139893971 + AluSq SINE Alu 1 296 -17 2213 103 0 0 chrX 37080170 37080443 -139893697 + AluSx SINE Alu 1 273 -39 261 0 0 0 chrX 37080455 37080484 -139893656 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2286 103 3 0 chrX 37081025 37081317 -139892823 - AluSx SINE Alu -19 293 1 754 157 0 22 chrX 37081475 37081609 -139892531 - FLAM_C SINE Alu 0 133 3 377 137 107 176 chrX 37081612 37081743 -139892397 - MIR SINE MIR -59 203 82 739 195 32 85 chrX 37084034 37084280 -139889860 + MER112 DNA MER1_type 17 249 -11 753 165 30 43 chrX 37084280 37084444 -139889696 + MIR SINE MIR 59 220 -42 226 286 59 34 chrX 37084401 37084520 -139889620 - MIR3 SINE MIR -10 198 77 * 301 312 9 18 chrX 37084533 37084642 -139889498 + MIR SINE MIR 2 109 -153 686 211 29 39 chrX 37084945 37085149 -139888991 - L2 LINE L2 0 3313 3112 321 199 96 37 chrX 37085349 37085485 -139888655 - L2 LINE L2 -1202 2112 1969 301 324 51 33 chrX 37086152 37086457 -139887683 - L2 LINE L2 -262 3051 2739 312 326 81 29 chrX 37086485 37086657 -139887483 + MIR SINE MIR 63 243 -19 292 185 19 0 chrX 37086746 37086800 -139887340 + L2 LINE L2 3255 3309 -4 536 243 50 7 chrX 37087497 37087668 -139886472 + L1ME3 LINE L1 5986 6158 -4 24 32 0 0 chrX 37087772 37087803 -139886337 + AT_rich Low_complexity Low_complexity 1 31 0 403 252 10 10 chrX 37087820 37087923 -139886217 + MIR SINE MIR 60 162 -100 669 266 145 5 chrX 37088192 37088406 -139885734 - MIR SINE MIR -1 261 18 520 296 99 0 chrX 37089191 37089424 -139884716 + L2 LINE L2 2862 3117 -196 226 279 119 35 chrX 37089437 37089638 -139884502 + L2 LINE L2 3028 3245 -68 248 194 16 32 chrX 37090559 37090655 -139883485 + (CCG)n Simple_repeat Simple_repeat 1 94 0 195 139 0 0 chrX 37090851 37090887 -139883253 + (CGG)n Simple_repeat Simple_repeat 1 36 0 277 202 155 12 chrX 37092455 37092539 -139881601 - MIR SINE MIR -10 252 157 473 202 0 65 chrX 37092587 37092711 -139881429 - MLT1J LTR MaLR -3 508 393 1339 270 57 8 chrX 37092775 37093326 -139880814 + L2 LINE L2 2503 3088 -225 201 121 0 0 chrX 37094190 37094223 -139879917 + (T)n Simple_repeat Simple_repeat 1 33 0 499 299 21 46 chrX 37094766 37094960 -139879180 + MIR SINE MIR 71 259 -3 273 278 5 43 chrX 37096402 37096589 -139877551 + CT-rich Low_complexity Low_complexity 1 180 0 181 318 0 0 chrX 37096673 37096717 -139877423 + L2 LINE L2 3208 3251 -21 277 211 0 0 chrX 37097004 37097056 -139877084 + MIR SINE MIR 209 260 -2 * 417 320 106 11 chrX 37097051 37097571 -139876569 - L1ME4a LINE L1 -179 5942 5329 763 336 22 38 chrX 37097573 37097888 -139876252 - L1ME4a LINE L1 -826 5320 5011 717 324 20 4 chrX 37097888 37098138 -139876002 + MIR SINE MIR 7 260 -2 347 301 53 45 chrX 37098262 37098508 -139875632 - L1ME4a LINE L1 -1217 4929 4682 249 279 0 0 chrX 37098609 37098695 -139875445 + CT-rich Low_complexity Low_complexity 1 86 0 221 348 104 37 chrX 37098769 37098904 -139875236 - MIR3 SINE MIR -28 180 37 1413 134 16 8 chrX 37100310 37100557 -139873583 - MLT1C LTR MaLR -1 466 218 188 277 157 0 chrX 37100948 37101031 -139873109 + MIR3 SINE MIR 112 207 -1 948 282 64 6 chrX 37101365 37101723 -139872417 + L2 LINE L2 2264 2642 -672 288 0 0 0 chrX 37102016 37102048 -139872092 + (TG)n Simple_repeat Simple_repeat 2 33 0 566 269 0 7 chrX 37102766 37102907 -139871233 + MIR SINE MIR 61 200 -62 564 216 61 2 chrX 37104062 37104196 -139869944 + MIR SINE MIR 14 146 -63 683 233 7 9 chrX 37104202 37104358 -139869782 - MIR SINE MIR -61 147 7 555 16 0 0 chrX 37104449 37104513 -139869627 + (TC)n Simple_repeat Simple_repeat 1 64 0 217 50 25 25 chrX 37104512 37104552 -139869588 + (CA)n Simple_repeat Simple_repeat 1 40 0 * 2290 90 0 3 chrX 37105474 37105775 -139868365 + AluSg1 SINE Alu 1 300 -9 396 171 276 0 chrX 37105886 37105991 -139868149 - MER45A DNA AcHobo -44 134 1 349 223 253 30 chrX 37105994 37106160 -139867980 - MIR SINE MIR -35 227 25 2282 107 0 0 chrX 37106289 37106599 -139867541 + AluSx SINE Alu 1 310 -2 228 282 176 48 chrX 37107226 37107394 -139866746 + MIR SINE MIR 36 225 -37 216 330 18 0 chrX 37107904 37108016 -139866124 + (CCCTAA)n Simple_repeat Simple_repeat 2 115 0 271 354 17 11 chrX 37108635 37108813 -139865327 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 210 234 0 0 chrX 37109594 37109641 -139864499 + (CCCCAG)n Simple_repeat Simple_repeat 6 52 0 206 310 17 43 chrX 37110824 37110940 -139863200 - MIR SINE MIR -134 128 16 189 147 0 0 chrX 37112356 37112390 -139861750 + (CACCC)n Simple_repeat Simple_repeat 2 35 0 1778 130 52 0 chrX 37114449 37114770 -139859370 + AluSx SINE Alu 1 335 0 366 250 119 45 chrX 37114774 37115042 -139859098 + L1MC5 LINE L1 7645 7932 -29 2259 99 0 10 chrX 37115046 37115358 -139858782 + AluSc SINE Alu 1 309 0 245 315 11 43 chrX 37115365 37115549 -139858591 + (CAGAGA)n Simple_repeat Simple_repeat 2 179 0 390 299 19 22 chrX 37115604 37115861 -139858279 + GA-rich Low_complexity Low_complexity 1 257 -652 1830 170 20 0 chrX 37115861 37116167 -139857973 + AluJb SINE Alu 1 312 0 390 299 19 22 chrX 37116167 37116516 -139857624 + GA-rich Low_complexity Low_complexity 257 909 0 2198 90 0 0 chrX 37116627 37116904 -139857236 + AluSx SINE Alu 1 277 -35 192 40 0 0 chrX 37116905 37116930 -139857210 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 269 311 19 10 chrX 37116983 37117086 -139857054 - MIR SINE MIR -71 191 88 646 264 288 5 chrX 37117959 37118338 -139855802 - L2 LINE L2 -1 3312 2827 471 355 23 14 chrX 37118913 37119130 -139855010 + L1M4 LINE L1 5097 5315 -831 2099 140 3 0 chrX 37119201 37119508 -139854632 - AluSx SINE Alu -4 308 1 928 236 24 5 chrX 37119551 37119759 -139854381 + MIR SINE MIR 24 235 -27 2086 101 14 10 chrX 37120144 37120440 -139853700 - AluSx SINE Alu -15 297 1 2018 136 0 10 chrX 37120440 37120747 -139853393 - AluJb SINE Alu -6 306 1 605 217 97 11 chrX 37121289 37121436 -139852704 - MIR SINE MIR 0 262 96 1881 100 64 18 chrX 37121436 37121717 -139852423 + AluSg SINE Alu 1 294 -16 605 217 97 11 chrX 37121717 37121744 -139852396 - MIR SINE MIR -166 96 73 1283 180 118 37 chrX 37121848 37122120 -139852020 + AluJo SINE Alu 3 296 -6 2292 95 0 22 chrX 37122336 37122652 -139851488 + AluSg SINE Alu 1 309 -1 2335 93 0 3 chrX 37122657 37122959 -139851181 + AluSc SINE Alu 1 301 -8 564 262 143 18 chrX 37123127 37123295 -139850845 - MIR SINE MIR -62 200 12 2316 95 0 0 chrX 37124207 37124513 -139849627 + AluSx SINE Alu 1 306 -6 480 35 0 0 chrX 37124837 37124895 -139849245 + (TG)n Simple_repeat Simple_repeat 2 59 0 443 244 81 56 chrX 37125477 37125637 -139848503 + MIR SINE MIR 97 260 -2 2225 110 0 0 chrX 37125722 37126030 -139848110 + AluSx SINE Alu 1 308 -4 753 164 0 0 chrX 37126056 37126178 -139847962 + FLAM_C SINE Alu 14 135 -8 1000 163 18 0 chrX 37126932 37127098 -139847042 + FRAM SINE Alu 1 161 -15 342 326 61 8 chrX 37127103 37127235 -139846905 - L1M4 LINE L1 -1674 4472 4334 219 340 20 20 chrX 37127676 37127826 -139846314 + (CCCCAA)n Simple_repeat Simple_repeat 5 154 0 327 227 202 34 chrX 37127936 37128055 -139846085 + MIR SINE MIR 11 149 -113 857 213 51 37 chrX 37128057 37128273 -139845867 - MIR SINE MIR -29 233 15 258 350 11 17 chrX 37128337 37128514 -139845626 + (CCCCAA)n Simple_repeat Simple_repeat 5 180 0 2057 17 3 109 chrX 37130789 37131107 -139843033 + AluY SINE Alu 20 306 0 757 157 7 29 chrX 37131112 37131252 -139842888 + FLAM_C SINE Alu 7 143 0 2212 100 0 28 chrX 37131263 37131584 -139842556 + AluSx SINE Alu 1 312 0 2355 77 0 13 chrX 37131853 37132166 -139841974 + AluSg SINE Alu 1 309 -1 185 333 0 13 chrX 37132721 37132796 -139841344 + L2 LINE L2 2965 3038 -234 * 994 251 85 89 chrX 37132783 37133094 -139841046 - L2 LINE L2 0 3313 3003 2018 141 3 7 chrX 37133094 37133400 -139840740 + AluJo SINE Alu 1 305 -7 994 251 85 89 chrX 37133400 37133546 -139840594 - L2 LINE L2 -310 3003 2858 681 254 75 40 chrX 37134982 37135210 -139838930 - MIR SINE MIR -21 241 6 404 275 166 48 chrX 37135137 37135366 -139838774 + MIR SINE MIR 7 262 0 * 495 238 0 9 chrX 37136048 37136153 -139837987 - L2 LINE L2 -3 3310 3207 450 250 0 48 chrX 37136257 37136445 -139837695 + (CCCCAA)n Simple_repeat Simple_repeat 2 180 0 449 279 23 12 chrX 37136467 37136639 -139837501 + (CCCCAA)n Simple_repeat Simple_repeat 1 174 0 2311 96 0 6 chrX 37136688 37137000 -139837140 + AluSg SINE Alu 1 310 0 2257 75 26 10 chrX 37137098 37137403 -139836737 - AluY SINE Alu -1 310 1 1674 230 40 50 chrX 37138334 37138723 -139835417 - L2 LINE L2 -2 3311 2920 2192 109 0 10 chrX 37138723 37139025 -139835115 - AluSq SINE Alu -14 299 1 1674 230 40 50 chrX 37139025 37139060 -139835080 - L2 LINE L2 -393 2920 2886 1434 100 193 28 chrX 37139060 37139309 -139834831 + AluSc SINE Alu 3 292 -7 1674 230 40 50 chrX 37139309 37139554 -139834586 - L2 LINE L2 -427 2886 2638 2253 100 0 7 chrX 37139758 37140068 -139834072 - AluSx SINE Alu -4 308 1 1248 172 9 5 chrX 37140432 37140653 -139833487 + AluJo SINE Alu 86 307 -5 611 213 8 8 chrX 37140714 37140841 -139833299 - L2 LINE L2 -3 3310 3184 225 291 0 0 chrX 37140854 37140909 -139833231 - MIR SINE MIR -28 234 180 330 132 0 0 chrX 37140936 37140989 -139833151 + (GGA)n Simple_repeat Simple_repeat 1 53 0 248 247 41 63 chrX 37141596 37141712 -139832428 - MIR SINE MIR -66 142 30 573 271 99 36 chrX 37143234 37143455 -139830685 + MIR SINE MIR 4 238 -24 2141 108 9 22 chrX 37143463 37143779 -139830361 + AluSx SINE Alu 1 312 0 258 160 20 0 chrX 37143793 37143843 -139830297 + MIR SINE MIR 212 262 0 590 306 46 5 chrX 37143879 37144098 -139830042 - MIR SINE MIR -1 261 34 397 288 166 53 chrX 37145720 37145778 -139828362 - MLT1L LTR MaLR -21 594 544 514 283 11 48 chrX 37145778 37145864 -139828276 - MER104 DNA MER2_type 0 180 1 499 248 0 0 chrX 37145864 37145965 -139828175 - HsTC2 DNA Tc2 -1797 101 1 397 288 166 53 chrX 37145965 37146243 -139827897 - MLT1L LTR MaLR -71 544 220 184 348 0 45 chrX 37146755 37146844 -139827296 + L2 LINE L2 3138 3222 -50 205 146 98 0 chrX 37151164 37151205 -139822935 - MIR3 SINE MIR -48 160 116 210 208 0 0 chrX 37151391 37151444 -139822696 + GA-rich Low_complexity Low_complexity 2 54 0 1634 172 3 3 chrX 37151595 37151880 -139822260 + AluJb SINE Alu 1 285 -27 243 61 0 0 chrX 37151880 37151913 -139822227 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 655 254 35 46 chrX 37152424 37152503 -139821637 + MIR SINE MIR 20 98 -164 2233 85 0 13 chrX 37152503 37152809 -139821331 - AluSx SINE Alu -10 302 1 655 254 35 46 chrX 37152809 37152926 -139821214 + MIR SINE MIR 98 214 -48 21 0 0 0 chrX 37152955 37152976 -139821164 + AT_rich Low_complexity Low_complexity 1 21 0 1868 155 3 0 chrX 37152996 37153299 -139820841 + AluJb SINE Alu 6 309 -3 2312 97 3 0 chrX 37154301 37154611 -139819529 - AluSq SINE Alu -2 311 1 492 209 76 9 chrX 37154659 37154764 -139819376 - MIR SINE MIR -63 145 34 204 40 0 0 chrX 37155813 37155838 -139818302 + (GGA)n Simple_repeat Simple_repeat 1 25 0 213 354 0 0 chrX 37155868 37155967 -139818173 + GA-rich Low_complexity Low_complexity 2 100 0 219 306 0 0 chrX 37156389 37156438 -139817702 - L2 LINE L2 -3 3310 3262 769 273 103 35 chrX 37156697 37157103 -139817037 - L2 LINE L2 -377 2937 2504 366 282 64 7 chrX 37157092 37157278 -139816862 - MIR SINE MIR -28 234 2 * 1984 120 0 3 chrX 37157356 37157647 -139816493 + AluJb SINE Alu 1 290 -22 1786 124 3 54 chrX 37157682 37158000 -139816140 + AluSx SINE Alu 1 303 0 700 336 33 0 chrX 37158001 37158275 -139815865 + L1MC/D LINE L1 5433 5715 -2093 975 249 36 20 chrX 37158429 37158678 -139815462 + MIR SINE MIR 7 259 -3 975 278 108 36 chrX 37158696 37158890 -139815250 - L1MC4a LINE L1 -1870 5938 5759 1989 101 0 44 chrX 37158890 37159206 -139814934 + AluSx SINE Alu 1 302 -10 975 278 108 36 chrX 37159206 37159483 -139814657 - L1MC4a LINE L1 -2049 5759 5433 2167 107 0 10 chrX 37159484 37159792 -139814348 - AluSx SINE Alu -7 305 1 200 318 130 36 chrX 37159823 37160015 -139814125 - L2 LINE L2 -1390 1924 1715 601 269 18 6 chrX 37160080 37160251 -139813889 + MIR SINE MIR 56 228 -34 34 0 0 0 chrX 37160468 37160502 -139813638 + GC_rich Low_complexity Low_complexity 1 34 0 292 268 71 6 chrX 37162076 37162244 -139811896 + (CAGAGA)n Simple_repeat Simple_repeat 1 179 0 * 402 286 17 11 chrX 37162187 37162365 -139811775 + GA-rich Low_complexity Low_complexity 2 180 0 441 218 40 23 chrX 37162374 37162548 -139811592 + (CAGA)n Simple_repeat Simple_repeat 2 178 0 * 465 233 0 39 chrX 37162455 37162635 -139811505 + (CAGAGA)n Simple_repeat Simple_repeat 6 178 0 193 109 43 0 chrX 37162661 37162707 -139811433 + (CAGAGA)n Simple_repeat Simple_repeat 4 51 0 331 224 0 26 chrX 37165364 37165440 -139808700 + L2 LINE L2 3197 3270 -2 236 304 51 0 chrX 37165442 37165521 -139808619 + L1ME LINE L1 5615 5697 -424 2785 84 38 5 chrX 37165655 37166047 -139808093 - L1PA8 LINE L1 0 6172 5768 3881 74 9 17 chrX 37166048 37166478 -139807662 + L1PA8A LINE L1 5058 5479 -652 2234 85 0 0 chrX 37166478 37166806 -139807334 + AluSq SINE Alu 1 328 0 3881 74 9 17 chrX 37166806 37167092 -139807048 + L1PA8A LINE L1 5479 5766 -365 1452 241 76 32 chrX 37167502 37167909 -139806231 - MER77 LTR ERV1 -6 599 175 566 252 52 19 chrX 37167988 37168143 -139805997 - MER77 LTR ERV1 -393 212 53 681 280 42 17 chrX 37168216 37168455 -139805685 - MIR SINE MIR -3 259 15 1276 265 46 33 chrX 37168790 37168912 -139805228 - L2 LINE L2 0 3313 3194 1061 206 33 9 chrX 37168912 37169098 -139805042 - MER58A DNA MER1_type -2197 223 30 2049 141 0 0 chrX 37169098 37169404 -139804736 + AluSx SINE Alu 1 306 -6 1061 206 33 9 chrX 37169404 37169431 -139804709 - MER58A DNA MER1_type -2390 30 5 1276 265 46 33 chrX 37169431 37169701 -139804439 - L2 LINE L2 -119 3194 2916 691 277 147 21 chrX 37169698 37169983 -139804157 + L2 LINE L2 2987 3307 -6 * 1897 138 92 14 chrX 37170008 37170356 -139803784 - THE1C LTR MaLR 0 375 1 2426 133 54 3 chrX 37170399 37170767 -139803373 + MSTC LTR MaLR 42 428 0 396 0 0 0 chrX 37171309 37171353 -139802787 + (CA)n Simple_repeat Simple_repeat 1 44 0 9153 35 0 0 chrX 37171474 37173373 -139800767 - L1PA3 LINE L1 0 6155 4300 8527 29 3 0 chrX 37173373 37174375 -139799765 + L1PA3 LINE L1 3325 4329 -1817 2160 100 10 0 chrX 37174375 37174675 -139799465 - AluY SINE Alu -8 303 1 552 299 40 17 chrX 37175016 37175190 -139798950 + MIR SINE MIR 85 262 0 2050 107 47 0 chrX 37175495 37175793 -139798347 - AluSx SINE Alu 0 312 1 382 243 27 0 chrX 37176149 37176223 -139797917 - MER5A DNA MER1_type -76 113 38 252 288 25 34 chrX 37176275 37176393 -139797747 + MER117 DNA MER1_type 79 195 -2 351 96 0 0 chrX 37176808 37176860 -139797280 + (GGA)n Simple_repeat Simple_repeat 3 54 0 2030 116 0 31 chrX 37176928 37177246 -139796894 + AluSx SINE Alu 1 308 -4 22240 132 28 11 chrX 37177257 37180715 -139793425 + L1MA2 LINE L1 14 3529 -4036 5669 132 20 4 chrX 37180700 37182138 -139792002 + L1MA2 LINE L1 5723 7181 -542 * 6205 85 12 40 chrX 37182138 37183319 -139790821 + L1PA10 LINE L1 4995 6151 -17 198 0 0 0 chrX 37183319 37183341 -139790799 + (TTTAA)n Simple_repeat Simple_repeat 1 22 0 6205 85 12 40 chrX 37183341 37183355 -139790785 + L1PA10 LINE L1 6151 6164 -4 3646 72 47 6 chrX 37183355 37183862 -139790278 + L1MA2 LINE L1 7188 7723 0 486 245 58 36 chrX 37184229 37184368 -139789772 - MIR SINE MIR -25 237 96 198 386 23 8 chrX 37184917 37185049 -139789091 + L2 LINE L2 2724 2857 -457 324 270 108 0 chrX 37185134 37185245 -139788895 - MIR3 SINE MIR -15 193 71 241 274 206 0 chrX 37185860 37185933 -139788207 - MIR3 SINE MIR -6 202 115 1894 152 0 31 chrX 37186018 37186340 -139787800 - AluJo SINE Alu 0 312 1 635 299 97 30 chrX 37186751 37187112 -139787028 - MARNA DNA Mariner -54 532 148 508 292 56 40 chrX 37187201 37187451 -139786689 + MIR SINE MIR 7 260 -2 204 211 0 0 chrX 37187653 37187691 -139786449 + CT-rich Low_complexity Low_complexity 1 38 0 183 318 95 0 chrX 37187747 37187810 -139786330 - MIR SINE MIR -57 151 83 416 277 142 26 chrX 37187917 37188072 -139786068 - MIR SINE MIR -8 254 82 270 374 15 15 chrX 37188581 37188712 -139785428 + MIR SINE MIR 17 147 -115 1452 165 70 11 chrX 37189037 37189309 -139784831 + AluJb SINE Alu 3 290 -22 2103 103 0 26 chrX 37189315 37189627 -139784513 + AluSg SINE Alu 1 304 -6 271 277 40 20 chrX 37190018 37190119 -139784021 + MIR3 SINE MIR 105 207 -1 639 201 17 0 chrX 37190556 37190730 -139783410 + GA-rich Low_complexity Low_complexity 1 177 0 1111 181 144 25 chrX 37190981 37191258 -139782882 + L1MD3 LINE L1 7577 7886 -109 214 279 67 77 chrX 37191292 37191396 -139782744 - L3 LINE CR1 -1430 147 45 496 167 13 0 chrX 37191543 37191621 -139782519 + AluJ/FLAM SINE Alu 2 80 -232 782 264 36 36 chrX 37192108 37192370 -139781770 + MIR SINE MIR 3 262 0 1633 134 46 11 chrX 37192381 37192664 -139781476 + L1MB7 LINE L1 5876 6168 -16 505 230 48 0 chrX 37192772 37192898 -139781242 + MIR SINE MIR 131 262 0 579 294 37 37 chrX 37193025 37193212 -139780928 + MIR SINE MIR 5 191 -71 2289 115 131 11 chrX 37193229 37193611 -139780529 + MSTA LTR MaLR 1 428 0 240 330 0 27 chrX 37193661 37193773 -139780367 + A-rich Low_complexity Low_complexity 3 111 0 1664 139 77 0 chrX 37194015 37194288 -139779852 - AluSp SINE Alu -19 294 1 1054 68 0 0 chrX 37194293 37194425 -139779715 - AluSq/x SINE Alu -180 133 2 1861 161 0 7 chrX 37194484 37194788 -139779352 - AluJo SINE Alu -8 304 3 261 0 0 0 chrX 37195700 37195729 -139778411 + (A)n Simple_repeat Simple_repeat 1 29 0 225 146 0 0 chrX 37196260 37196308 -139777832 + (GA)n Simple_repeat Simple_repeat 2 49 0 596 213 75 25 chrX 37196540 37196700 -139777440 + MLT1B LTR MaLR 4 171 -219 294 216 0 0 chrX 37196724 37196798 -139777342 + T-rich Low_complexity Low_complexity 1 74 0 1067 203 10 0 chrX 37196801 37196998 -139777142 + MLT1B LTR MaLR 192 390 0 2353 152 44 26 chrX 37197370 37197759 -139776381 - MSTD LTR MaLR 0 396 1 1894 206 48 28 chrX 37199258 37199715 -139774425 - MLT1C LTR MaLR -1 466 1 217 317 83 21 chrX 37199949 37200094 -139774046 - MIR SINE MIR -88 174 21 1420 175 73 94 chrX 37200445 37200679 -139773461 - MLT1A2 LTR MaLR 0 374 150 1536 139 31 4 chrX 37200679 37200938 -139773202 - L1MA4 LINE L1 -6 6294 6029 1420 175 73 94 chrX 37200938 37201085 -139773055 - MLT1A2 LTR MaLR -224 150 1 201 314 23 23 chrX 37201141 37201227 -139772913 + MIR SINE MIR 79 164 -98 225 279 13 0 chrX 37201597 37201676 -139772464 + L3b LINE CR1 1311 1390 -193 6066 58 19 26 chrX 37201684 37202455 -139771685 + MER4E LTR ERV1 1 766 0 296 403 16 0 chrX 37202800 37202929 -139771211 - MIR SINE MIR -130 132 2 409 350 52 38 chrX 37203010 37203301 -139770839 + L2 LINE L2 2464 2758 -556 1859 192 28 11 chrX 37203308 37203667 -139770473 + MLT1A1 LTR MaLR 1 365 0 301 243 74 128 chrX 37203705 37204001 -139770139 + L2 LINE L2 2933 3212 -60 15158 147 24 48 chrX 37205436 37205596 -139768544 - L1MA5 LINE L1 -3 6297 6135 2329 103 0 3 chrX 37205596 37205906 -139768234 + AluSg SINE Alu 2 310 0 15158 147 24 48 chrX 37205906 37207586 -139766554 - L1MA5 LINE L1 -165 6135 4416 297 0 0 0 chrX 37207586 37207619 -139766521 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 15158 147 24 48 chrX 37207619 37209515 -139764625 - L1MA5 LINE L1 -1884 4416 2676 2210 129 3 0 chrX 37209515 37209826 -139764314 + AluSx SINE Alu 1 312 0 15158 147 24 48 chrX 37209826 37210204 -139763936 - L1MA5 LINE L1 -3624 2676 2290 1907 141 0 0 chrX 37210986 37211312 -139762828 + AluJb SINE Alu 1 326 0 265 276 218 0 chrX 37211473 37211560 -139762580 - MER91C DNA MER1_type -32 108 3 3115 159 26 110 chrX 37212314 37212968 -139761172 + MER77 LTR ERV1 3 601 -4 364 303 33 35 chrX 37213995 37214162 -139759978 - MIR SINE MIR -67 141 18 240 290 14 14 chrX 37214382 37214451 -139759689 + L2 LINE L2 3183 3251 -21 291 290 176 23 chrX 37214587 37214718 -139759422 + MIR SINE MIR 92 242 -20 249 273 38 91 chrX 37216075 37216207 -139757933 - MIR SINE MIR -112 150 26 2123 151 0 0 chrX 37216813 37217125 -139757015 + AluSx SINE Alu 1 312 0 2628 139 148 17 chrX 37218299 37218682 -139755458 - MLT2B1 LTR ERVL 0 520 66 1297 176 120 50 chrX 37218682 37219023 -139755117 - MLT1A1 LTR MaLR 0 365 1 2628 139 148 17 chrX 37219023 37219099 -139755041 - MLT2B1 LTR ERVL -454 66 1 2013 144 0 22 chrX 37219435 37219754 -139754386 - AluJb SINE Alu 0 312 1 1277 185 14 149 chrX 37220176 37220547 -139753593 - MLT1A1 LTR MaLR 0 365 56 2310 102 0 0 chrX 37220547 37220842 -139753298 + AluSc SINE Alu 3 297 -12 1277 185 14 149 chrX 37220842 37220892 -139753248 - MLT1A1 LTR MaLR -309 56 1 2668 270 31 71 chrX 37221363 37222349 -139751791 + L1M4b LINE L1 11 1202 -5657 1411 181 17 148 chrX 37222544 37222582 -139751558 - MLT1A1 LTR MaLR 0 365 324 2067 147 0 0 chrX 37222582 37222882 -139751258 + AluSx SINE Alu 1 300 -12 1411 181 17 148 chrX 37222882 37223263 -139750877 - MLT1A1 LTR MaLR -41 324 1 1654 197 33 76 chrX 37223375 37223653 -139750487 + L1M4b LINE L1 1206 1456 -5403 1828 175 0 14 chrX 37223653 37223950 -139750190 + AluJo SINE Alu 1 293 -19 1654 197 33 76 chrX 37223950 37224158 -139749982 + L1M4b LINE L1 1456 1671 -5188 3021 179 2 0 chrX 37224173 37224708 -139749432 + L1 LINE L1 3682 4217 -1929 7064 162 153 35 chrX 37224708 37226239 -139747901 - MER52A LTR ERV1 0 1755 45 202 283 17 0 chrX 37226561 37226621 -139747519 + (CCA)n Simple_repeat Simple_repeat 3 63 0 299 175 16 0 chrX 37226673 37226736 -139747404 + L1 LINE L1 4214 4277 -1869 384 219 95 19 chrX 37226741 37226846 -139747294 + MER67A LTR ERV1 431 543 0 2505 160 52 27 chrX 37227087 37227530 -139746610 - MSTB2 LTR MaLR 0 457 4 1223 201 44 103 chrX 37228070 37228560 -139745580 - LTR34 LTR ERV1 -4 695 136 4829 116 31 25 chrX 37228621 37229138 -139745002 + LTR8 LTR ERV1 1 524 -167 2342 111 0 0 chrX 37229138 37229444 -139744696 + AluSx SINE Alu 1 306 -6 4829 116 31 25 chrX 37229444 37229613 -139744527 + LTR8 LTR ERV1 524 691 0 404 164 25 115 chrX 37229638 37229673 -139744467 - MER4C LTR ERV1 -349 116 79 1860 118 0 49 chrX 37229673 37229960 -139744180 + AluSx SINE Alu 1 273 -39 404 164 25 115 chrX 37229960 37230046 -139744094 - MER4C LTR ERV1 -386 79 6 789 260 60 44 chrX 37230149 37230468 -139743672 - LTR33 LTR ERVL -58 463 140 1254 262 99 52 chrX 37230528 37230822 -139743318 + MLT1F1 LTR MaLR 3 282 -285 900 185 135 126 chrX 37230822 37231378 -139742762 - MER34B LTR ERV1 0 565 5 1254 262 99 52 chrX 37231378 37231558 -139742582 + MLT1F1 LTR MaLR 282 507 -60 5842 75 1 0 chrX 37231558 37232248 -139741892 - LTR8 LTR ERV1 0 691 1 1254 262 99 52 chrX 37232248 37232307 -139741833 + MLT1F1 LTR MaLR 507 562 -5 250 309 73 32 chrX 37232301 37232424 -139741716 - LTR33 LTR ERVL -393 128 1 * 2795 92 23 5 chrX 37232449 37232839 -139741301 + MER4E LTR ERV1 1 397 -382 195 114 0 0 chrX 37233203 37233238 -139740902 + (TA)n Simple_repeat Simple_repeat 2 36 0 2410 170 43 47 chrX 37233310 37233797 -139740343 - MER31A LTR ERV1 0 485 1 306 259 129 0 chrX 37233941 37234026 -139740114 + L2 LINE L2 3152 3247 -25 1309 104 21 10 chrX 37234044 37234236 -139739904 + L1M1 LINE L1 15 208 -7357 2635 118 100 5 chrX 37234254 37234645 -139739495 + MSTA LTR MaLR 1 428 0 5960 109 27 11 chrX 37234662 37235665 -139738475 - L1PB2 LINE L1 -1 6150 5126 * 7497 194 44 71 chrX 37235661 37237414 -139736726 + L1M1 LINE L1 730 2417 -5148 1875 150 3 19 chrX 37237414 37237728 -139736412 + AluSq SINE Alu 1 309 -4 7497 194 44 71 chrX 37237728 37238074 -139736066 + L1M1 LINE L1 2417 2771 -4794 3463 176 36 5 chrX 37238073 37238816 -139735324 + L1M1 LINE L1 4226 4991 -2574 * 936 97 8 0 chrX 37238816 37238940 -139735200 + AluY SINE Alu 1 125 -186 469 209 183 20 chrX 37238947 37239100 -139735040 - MER39 LTR ERV1 -526 181 4 1574 175 132 9 chrX 37239195 37239521 -139734619 - MER31B LTR ERV1 0 466 101 376 214 12 32 chrX 37239519 37239636 -139734504 + MER34C LTR ERV1 7 111 -474 * 192 77 0 0 chrX 37239637 37239663 -139734477 + (A)n Simple_repeat Simple_repeat 1 26 0 712 189 49 70 chrX 37239780 37240074 -139734066 + MER34B LTR ERV1 392 565 0 459 196 52 0 chrX 37240074 37240171 -139733969 - MER31B LTR ERV1 -364 102 1 33 43 0 0 chrX 37240447 37240494 -139733646 + AT_rich Low_complexity Low_complexity 1 47 0 930 243 176 52 chrX 37240561 37240981 -139733159 - LTR29 LTR ERV1 -150 472 1 504 148 0 0 chrX 37241121 37241202 -139732938 - AluSp/q SINE Alu -1 312 232 844 113 0 0 chrX 37241215 37241330 -139732810 - AluSg1 SINE Alu -194 115 1 768 134 42 0 chrX 37241331 37241450 -139732690 + MER41B LTR ERV1 512 635 0 250 193 53 0 chrX 37241450 37241504 -139732636 - LTR48 LTR ERV1 -657 130 74 476 124 38 19 chrX 37241536 37241641 -139732499 + LTR37A LTR ERV1 320 426 0 3529 114 9 17 chrX 37242597 37243089 -139731051 + MER34C LTR ERV1 62 551 -34 4350 136 31 50 chrX 37243089 37243883 -139730257 + MER4E LTR ERV1 1 779 0 3529 114 9 17 chrX 37243883 37243918 -139730222 + MER34C LTR ERV1 551 585 0 995 227 0 0 chrX 37244455 37244640 -139729500 + MER5A DNA MER1_type 1 185 -4 279 246 88 26 chrX 37245432 37245546 -139728594 + MER57-int LTR ERV1 5682 5802 -1735 610 12 37 0 chrX 37245551 37245633 -139728507 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 1370 165 99 6 chrX 37246156 37246491 -139727649 + AluJo SINE Alu 40 282 -30 287 242 61 24 chrX 37248542 37248676 -139725464 + MIR SINE MIR 90 232 -30 1481 77 91 0 chrX 37249122 37249330 -139724810 - MER30 DNA MER1_type 0 230 4 484 201 91 19 chrX 37249357 37249511 -139724629 + MIR SINE MIR 98 262 0 625 193 9 0 chrX 37251362 37251471 -139722669 + Tigger3(Golem) DNA MER2_type 1 110 -2919 345 190 0 0 chrX 37251476 37251534 -139722606 + Tigger3(Golem) DNA MER2_type 85 142 -2887 * 1583 73 0 10 chrX 37251531 37251737 -139722403 + Tigger3(Golem) DNA MER2_type 2771 2974 -55 1212 62 0 0 chrX 37251745 37251889 -139722251 + AluSg/x SINE Alu 156 299 -11 1742 116 160 25 chrX 37251889 37252208 -139721932 - MSTA LTR MaLR -66 362 1 399 145 0 26 chrX 37252264 37252340 -139721800 + MER53 DNA DNA 115 188 -1 1748 161 139 3 chrX 37252344 37252674 -139721466 - MER89 LTR ERV1 0 559 185 3764 156 17 3 chrX 37252737 37253490 -139720650 + L1MB7 LINE L1 5323 6137 -29 268 247 21 145 chrX 37254146 37254272 -139719868 - MER5B DNA MER1_type -6 172 74 2004 129 3 14 chrX 37254272 37254447 -139719693 - AluSx SINE Alu 0 308 136 2406 92 0 0 chrX 37254447 37254751 -139719389 - AluY SINE Alu -7 304 1 2004 129 3 14 chrX 37254751 37254886 -139719254 - AluSx SINE Alu -172 136 1 268 247 21 145 chrX 37254886 37254944 -139719196 - MER5B DNA MER1_type -104 74 10 1596 126 49 8 chrX 37254961 37255207 -139718933 + L1MC/D LINE L1 5450 5705 -628 399 255 14 101 chrX 37255193 37255314 -139718826 - L1MDb LINE L1 -5308 1101 1004 * 2282 107 0 0 chrX 37255314 37255605 -139718535 - AluSg1 SINE Alu -18 291 1 399 255 14 101 chrX 37255605 37255691 -139718449 - L1MDb LINE L1 -5405 1004 912 1579 181 20 23 chrX 37255698 37256001 -139718139 - AluJo SINE Alu -10 302 1 1062 229 71 34 chrX 37256010 37256222 -139717918 - L1MDa LINE L1 -5109 1431 1228 2194 107 7 3 chrX 37256222 37256512 -139717628 - AluSx SINE Alu -21 291 1 1062 229 71 34 chrX 37256512 37256706 -139717434 - L1MDa LINE L1 -5312 1228 1010 928 129 34 0 chrX 37257875 37258022 -139716118 + AluJb SINE Alu 140 291 -21 450 0 0 0 chrX 37258973 37259023 -139715117 + (TG)n Simple_repeat Simple_repeat 2 51 0 632 102 11 0 chrX 37260149 37260266 -139713874 + FLAM_A SINE Alu 25 142 0 403 91 0 39 chrX 37260338 37260415 -139713725 + L1MB2 LINE L1 6098 6171 0 558 196 12 168 chrX 37260465 37260869 -139713271 - L1MC4 LINE L1 0 8042 7702 2063 124 0 31 chrX 37260869 37261191 -139712949 - AluSx SINE Alu 0 312 1 244 290 0 0 chrX 37261194 37261263 -139712877 - L1MC4 LINE L1 -467 7575 7507 1873 160 7 0 chrX 37261853 37262147 -139711993 - AluSx SINE Alu -15 297 2 920 144 8 0 chrX 37262171 37262303 -139711837 - AluSq/x SINE Alu -179 133 1 730 229 18 13 chrX 37262328 37262515 -139711625 - L1MC4 LINE L1 -207 7678 7416 318 148 0 0 chrX 37262890 37262944 -139711196 + (TA)n Simple_repeat Simple_repeat 1 54 0 259 233 47 0 chrX 37262947 37263033 -139711107 + L1MC4 LINE L1 6614 6703 -1339 1011 161 0 0 chrX 37263042 37263222 -139710918 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chrX 37263222 37263249 -139710891 + (T)n Simple_repeat Simple_repeat 1 27 0 2097 135 0 0 chrX 37263448 37263737 -139710403 - AluSx SINE Alu -23 289 1 187 322 82 7 chrX 37264028 37264174 -139709966 + MIR3 SINE MIR 52 208 0 1009 183 0 59 chrX 37264402 37264604 -139709536 - AluJb SINE Alu -38 274 85 649 308 59 7 chrX 37265307 37265596 -139708544 - L1M4 LINE L1 -1658 4488 4185 990 106 0 0 chrX 37265614 37265746 -139708394 - AluJb SINE Alu -180 132 1 586 293 108 3 chrX 37265766 37266063 -139708077 - L1M4 LINE L1 -1978 4168 3841 1637 175 14 20 chrX 37266067 37266359 -139707781 - AluJb SINE Alu -9 303 14 2453 152 0 0 chrX 37266372 37266748 -139707392 - MER41D LTR ERV1 -181 376 1 843 231 20 43 chrX 37266748 37266871 -139707269 - L1MDa LINE L1 -4986 1554 1430 1535 189 10 23 chrX 37266871 37267177 -139706963 - AluJo SINE Alu -10 302 1 843 231 20 43 chrX 37267177 37267356 -139706784 - L1MDa LINE L1 -5110 1430 1259 3830 131 11 23 chrX 37267383 37268023 -139706117 + L1MC1 LINE L1 5696 6327 -6 23 68 0 0 chrX 37268023 37268067 -139706073 + AT_rich Low_complexity Low_complexity 1 44 0 833 222 29 54 chrX 37268077 37268235 -139705905 + L1MB7 LINE L1 2170 2320 -3826 2451 85 0 0 chrX 37268235 37268530 -139705610 + AluSg SINE Alu 1 295 -15 833 222 29 54 chrX 37268530 37268650 -139705490 + L1MB7 LINE L1 2320 2441 -3705 * 5945 196 38 25 chrX 37268635 37269585 -139704555 + L1MB7 LINE L1 3881 4864 -1378 612 187 49 24 chrX 37269585 37269708 -139704432 - FLAM_C SINE Alu -6 127 2 5945 196 38 25 chrX 37269708 37270434 -139703706 + L1MB7 LINE L1 4864 5579 -663 262 247 0 47 chrX 37270430 37270515 -139703625 + L1ME1 LINE L1 5992 6072 -94 * 192 40 0 0 chrX 37270524 37270549 -139703591 + (CA)n Simple_repeat Simple_repeat 2 26 0 7109 125 8 11 chrX 37270570 37272084 -139702056 + L1MA3 LINE L1 4796 6305 0 1432 187 79 94 chrX 37272485 37272929 -139701211 + MER66A LTR ERV1 97 474 -4 225 0 0 0 chrX 37273261 37273286 -139700854 + (A)n Simple_repeat Simple_repeat 1 25 0 2736 172 24 4 chrX 37273792 37274246 -139699894 + MER6 DNA MER2_type 5 467 -398 324 143 0 0 chrX 37275568 37275624 -139698516 + (GGGGA)n Simple_repeat Simple_repeat 1 56 0 381 321 75 36 chrX 37276050 37276302 -139697838 + MLT1K LTR MaLR 3 264 -324 298 286 11 22 chrX 37276335 37276426 -139697714 + MLT1K LTR MaLR 434 523 -65 196 291 101 0 chrX 37278013 37278092 -139696048 - L2 LINE L2 -2 3270 3184 224 290 0 14 chrX 37278371 37278440 -139695700 - MIR3 SINE MIR -41 167 100 2570 71 3 0 chrX 37279243 37279553 -139694587 + AluSp SINE Alu 2 312 -1 2322 85 14 3 chrX 37279567 37279862 -139694278 + AluSc SINE Alu 1 298 -11 1902 142 7 3 chrX 37280103 37280391 -139693749 + AluJb SINE Alu 1 289 -23 3074 167 31 0 chrX 37280580 37281120 -139693020 + L1MB7 LINE L1 5616 6172 -12 1058 116 33 128 chrX 37281166 37281236 -139692904 + MER20 DNA MER1_type 1 76 -143 762 176 0 22 chrX 37281236 37281372 -139692768 - FLAM_C SINE Alu 0 133 1 2369 101 0 3 chrX 37281382 37281688 -139692452 - AluSp SINE Alu -7 306 2 1058 116 33 128 chrX 37281688 37281848 -139692292 + MER20 DNA MER1_type 85 219 0 1616 198 16 3 chrX 37281891 37282199 -139691941 - AluJo SINE Alu 0 312 1 1443 198 87 57 chrX 37283123 37283527 -139690613 + LOR1b LTR ERV1 46 461 0 620 209 85 13 chrX 37283527 37283680 -139690460 + L1ME1 LINE L1 5839 6002 -164 830 180 0 12 chrX 37283703 37283864 -139690276 + L1MA10 LINE L1 6176 6334 0 1527 134 0 5 chrX 37283899 37284116 -139690024 + AluSq SINE Alu 1 216 -97 213 300 0 12 chrX 37284421 37284501 -139689639 + (CAG)n Simple_repeat Simple_repeat 1 79 0 26 0 0 0 chrX 37289124 37289150 -139684990 + AT_rich Low_complexity Low_complexity 1 26 0 2467 93 0 0 chrX 37289150 37289462 -139684678 + AluSx SINE Alu 1 312 0 307 189 103 16 chrX 37290899 37291015 -139683125 - MIR SINE MIR -66 142 66 182 65 65 0 chrX 37291167 37291198 -139682942 + CT-rich Low_complexity Low_complexity 2 34 0 2307 113 0 0 chrX 37291953 37292262 -139681878 + AluSq SINE Alu 3 311 -2 273 29 0 0 chrX 37292349 37292383 -139681757 + (TG)n Simple_repeat Simple_repeat 2 35 0 219 125 0 0 chrX 37292385 37292425 -139681715 + (GA)n Simple_repeat Simple_repeat 1 40 0 676 182 33 0 chrX 37292773 37292894 -139681246 + FRAM SINE Alu 22 146 -30 2030 133 0 13 chrX 37292923 37293224 -139680916 + AluSx SINE Alu 1 297 -15 2215 135 3 0 chrX 37293300 37293633 -139680507 + LTR64 LTR ERVK 1 334 -224 2143 111 69 14 chrX 37293626 37293730 -139680410 + LTR44 LTR ERV1 138 235 -284 * 2130 122 0 3 chrX 37293730 37294026 -139680114 + AluSx SINE Alu 1 295 -17 2143 111 69 14 chrX 37294026 37294283 -139679857 + LTR44 LTR ERV1 235 519 0 501 189 0 22 chrX 37294493 37294583 -139679557 + MER21B LTR ERV1 3 90 -773 1471 157 112 4 chrX 37294605 37294872 -139679268 + MER21B LTR ERV1 19 314 -549 1552 36 0 36 chrX 37294872 37295067 -139679073 + L1PA3 LINE L1 5968 6155 0 242 36 0 0 chrX 37295064 37295092 -139679048 - AluY SINE Alu -260 40 13 27 87 0 0 chrX 37295218 37295287 -139678853 + AT_rich Low_complexity Low_complexity 1 69 0 628 237 19 6 chrX 37295339 37295495 -139678645 + MIR SINE MIR 70 227 -35 542 272 15 41 chrX 37295555 37295750 -139678390 + MIR SINE MIR 40 229 -33 2512 147 54 7 chrX 37295860 37296269 -139677871 - MSTC LTR MaLR 0 428 1 453 210 10 10 chrX 37296371 37296471 -139677669 - L2 LINE L2 0 3313 3214 736 243 131 82 chrX 37296481 37297638 -139676502 + MER52A-int LTR ERV1 45 1444 -4502 1816 160 3 7 chrX 37297969 37298263 -139675877 + AluJb SINE Alu 1 293 -19 1015 23 15 0 chrX 37298263 37298393 -139675747 + (TAGA)n Simple_repeat Simple_repeat 4 135 0 2236 188 65 105 chrX 37298506 37299041 -139675099 + MER52A-int LTR ERV1 834 1389 -3547 1528 161 92 4 chrX 37299041 37299330 -139674810 + AluJb SINE Alu 1 312 0 2236 188 65 105 chrX 37299330 37299522 -139674618 + MER52A-int LTR ERV1 1389 1423 -3513 1612 142 4 0 chrX 37299522 37299775 -139674365 + AluJb SINE Alu 51 304 0 2236 188 65 105 chrX 37299775 37300029 -139674111 + MER52A-int LTR ERV1 1423 1686 -3250 180 0 0 0 chrX 37300050 37300070 -139674070 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2209 97 0 7 chrX 37300074 37300363 -139673777 - AluSx SINE Alu -25 287 1 1378 219 78 66 chrX 37300374 37301014 -139673126 + MER52A-int LTR ERV1 1686 2333 -2603 366 236 57 16 chrX 37301151 37301274 -139672866 + MER52A-int LTR ERV1 2391 2518 -2418 3518 25 0 0 chrX 37301274 37301679 -139672461 + L1PA2 LINE L1 5751 6155 0 2239 167 19 52 chrX 37301689 37301724 -139672416 + MER52A-int LTR ERV1 2509 2544 -2392 1428 111 38 46 chrX 37301724 37301826 -139672314 + L1MA4 LINE L1 6037 6138 -162 1928 172 0 3 chrX 37301826 37302123 -139672017 + AluJb SINE Alu 1 296 -16 1428 111 38 46 chrX 37302123 37302281 -139671859 + L1MA4 LINE L1 6138 6295 -5 2239 167 19 52 chrX 37302281 37302766 -139671374 + MER52A-int LTR ERV1 2544 3012 -1924 600 159 71 32 chrX 37302766 37302892 -139671248 + FLAM_C SINE Alu 2 132 -11 4652 166 54 99 chrX 37302899 37303281 -139670859 + MER52A-int LTR ERV1 2998 3396 -1540 2195 106 10 0 chrX 37303281 37303583 -139670557 + AluSx SINE Alu 1 305 -7 4652 166 54 99 chrX 37303583 37304307 -139669833 + MER52A-int LTR ERV1 3396 4151 -785 2086 109 4 0 chrX 37304307 37304583 -139669557 + AluSq SINE Alu 11 287 -26 4652 166 54 99 chrX 37304583 37304598 -139669542 + MER52A-int LTR ERV1 4151 4165 -771 1716 153 8 0 chrX 37304598 37304860 -139669280 + AluSx SINE Alu 11 274 -38 189 0 0 0 chrX 37304866 37304887 -139669253 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 4652 166 54 99 chrX 37304887 37305067 -139669073 + MER52A-int LTR ERV1 4170 4249 -687 319 218 138 11 chrX 37305073 37305160 -139668980 + LTR37A LTR ERV1 4 101 -325 798 214 153 98 chrX 37305163 37305550 -139668590 + MER52A-int LTR ERV1 4325 4732 -204 516 261 15 0 chrX 37305568 37305698 -139668442 - MER34 LTR ERV1 -410 132 1 266 303 10 20 chrX 37306024 37306123 -139668017 - MIR3 SINE MIR -50 158 61 2284 123 3 0 chrX 37306136 37306503 -139667637 - AluSx SINE Alu 0 368 1 8188 183 104 11 chrX 37307151 37308756 -139665384 + MER52A LTR ERV1 1 1755 0 4672 134 45 82 chrX 37308839 37309777 -139664363 - MER4D LTR ERV1 0 903 1 236 255 66 38 chrX 37309781 37309887 -139664253 + L1ME1 LINE L1 3248 3356 -2790 257 230 81 0 chrX 37309949 37310023 -139664117 + L1ME1 LINE L1 4672 4751 -1395 1996 166 168 109 chrX 37310024 37310515 -139663625 - MLT1E2 LTR MaLR -2 624 92 1936 157 0 3 chrX 37310515 37310820 -139663320 + AluJo SINE Alu 6 309 -3 1996 166 168 109 chrX 37310820 37310913 -139663227 - MLT1E2 LTR MaLR -534 92 6 4330 185 34 27 chrX 37310919 37312324 -139661816 + L1ME1 LINE L1 4747 6161 -5 2193 97 3 17 chrX 37312515 37312813 -139661327 + AluSx SINE Alu 1 294 -18 594 213 0 0 chrX 37313334 37313442 -139660698 - FRAM SINE Alu -9 167 60 1344 224 8 73 chrX 37313442 37313826 -139660314 + LTR37B LTR ERV1 48 406 -62 587 278 76 7 chrX 37313836 37314191 -139659949 + LTR16A LTR ERVL 9 450 0 243 261 0 31 chrX 37314212 37314226 -139659914 + GA-rich Low_complexity Low_complexity 2 15 -49 2068 116 4 0 chrX 37314226 37314501 -139659639 + AluY SINE Alu 1 276 -35 243 261 0 31 chrX 37314501 37314551 -139659589 + GA-rich Low_complexity Low_complexity 15 64 0 930 283 28 47 chrX 37314551 37314911 -139659229 + HERV16 LTR ERVL 38 390 -4606 304 253 12 12 chrX 37314918 37315001 -139659139 - HERV16 LTR ERVL -2258 3396 3314 1718 150 22 76 chrX 37315001 37315183 -139658957 - L1MB2 LINE L1 -37 6134 6058 1930 167 0 16 chrX 37315183 37315495 -139658645 - AluJb SINE Alu 0 312 6 1718 150 22 76 chrX 37315495 37315728 -139658412 - L1MB2 LINE L1 -113 6058 5814 443 149 0 0 chrX 37315750 37315817 -139658323 - AluJb SINE Alu -38 274 208 3911 265 53 50 chrX 37315905 37316250 -139657890 - HERV16 LTR ERVL -1900 3096 2754 1814 149 76 0 chrX 37316250 37316538 -139657602 - AluSx SINE Alu -2 310 1 3911 265 53 50 chrX 37316538 37317191 -139656949 - HERV16 LTR ERVL -2242 2754 2251 2752 124 64 31 chrX 37317191 37317387 -139656753 + MLT1C LTR MaLR 1 189 -278 393 70 0 0 chrX 37317387 37317444 -139656696 + (CA)n Simple_repeat Simple_repeat 1 57 0 2752 124 64 31 chrX 37317444 37317699 -139656441 + MLT1C LTR MaLR 189 467 0 3911 265 53 50 chrX 37317699 37318054 -139656086 - HERV16 LTR ERVL -2745 2251 1899 628 283 25 58 chrX 37318201 37318358 -139655782 + LTR16A LTR ERVL 103 249 -201 1121 188 81 75 chrX 37318358 37318730 -139655410 + MLT1A2 LTR MaLR 1 374 0 628 283 25 58 chrX 37318730 37318848 -139655292 + LTR16A LTR ERVL 249 369 -81 854 126 0 22 chrX 37318864 37318999 -139655141 + FLAM_C SINE Alu 2 133 0 1180 175 5 5 chrX 37319026 37319232 -139654908 + AluJo SINE Alu 85 290 -22 315 250 0 0 chrX 37319291 37319359 -139654781 + LTR37B LTR ERV1 401 468 0 1866 36 5 0 chrX 37321226 37321449 -139652691 + L1PA8 LINE L1 5949 6172 0 2420 79 0 0 chrX 37322662 37322954 -139651186 + AluSx SINE Alu 1 292 -20 7230 55 7 0 chrX 37323035 37324493 -139649647 + L1PA7 LINE L1 4692 6154 0 475 258 0 8 chrX 37325904 37326032 -139648108 + L2 LINE L2 3184 3310 -3 2216 95 23 0 chrX 37326091 37326395 -139647745 + AluSp SINE Alu 3 313 0 45107 40 2 1 chrX 37326588 37332731 -139641409 + L1PA4 LINE L1 1 6152 -3 375 23 0 0 chrX 37332834 37332878 -139641262 + (TG)n Simple_repeat Simple_repeat 2 45 0 2158 119 7 3 chrX 37333521 37333823 -139640317 - AluSx SINE Alu -9 303 1 936 238 8 31 chrX 37333866 37334127 -139640013 - MIR SINE MIR -5 257 3 230 231 154 8 chrX 37334527 37334644 -139639496 + MER113 DNA MER1_type? 91 224 -297 31 26 0 0 chrX 37334674 37334712 -139639428 + AT_rich Low_complexity Low_complexity 1 38 0 1774 165 7 3 chrX 37334712 37334997 -139639143 - AluJo SINE Alu -26 286 1 599 182 0 88 chrX 37335002 37335161 -139638979 + MER104 DNA Tc2 36 180 0 35 0 0 0 chrX 37335186 37335221 -139638919 + AT_rich Low_complexity Low_complexity 1 35 0 394 312 38 0 chrX 37335294 37335451 -139638689 - MIR SINE MIR -40 222 60 470 17 17 0 chrX 37336051 37336110 -139638030 + (TG)n Simple_repeat Simple_repeat 2 61 0 324 143 0 0 chrX 37336111 37336167 -139637973 + (GA)n Simple_repeat Simple_repeat 2 57 0 334 310 55 21 chrX 37336315 37336460 -139637680 + MIR SINE MIR 12 161 -101 919 159 25 4 chrX 37336671 37336847 -139637293 + MLT1D LTR MaLR 1 150 -355 1531 183 37 86 chrX 37336849 37337417 -139636723 + L1M4 LINE L1 2768 3307 -2839 715 191 33 60 chrX 37337417 37337549 -139636591 + L1MB2 LINE L1 5993 6120 -51 1830 185 0 3 chrX 37337549 37337862 -139636278 + AluJo SINE Alu 1 312 0 715 191 33 60 chrX 37337862 37337912 -139636228 + L1MB2 LINE L1 6120 6170 -1 213 68 27 68 chrX 37338961 37339035 -139635105 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 1995 132 0 14 chrX 37339051 37339338 -139634802 - AluSx SINE Alu -29 283 1 2125 103 3 7 chrX 37339541 37339833 -139634307 + AluSx SINE Alu 22 312 0 1898 159 19 7 chrX 37339871 37340179 -139633961 + AluSx SINE Alu 1 312 0 808 241 68 2 chrX 37340208 37340447 -139633693 + L1ME LINE L1 5353 5610 -517 271 273 39 12 chrX 37340553 37340670 -139633470 + MIR SINE MIR 34 150 -63 2197 93 0 4 chrX 37340738 37341016 -139633124 + AluSq SINE Alu 1 277 -36 527 0 16 0 chrX 37341023 37341086 -139633054 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1896 133 8 0 chrX 37341096 37341360 -139632780 + AluSx SINE Alu 1 266 -46 225 171 29 14 chrX 37341363 37341433 -139632707 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 234 204 19 0 chrX 37341593 37341647 -139632493 + (TTG)n Simple_repeat Simple_repeat 1 55 0 2111 176 75 45 chrX 37341820 37342287 -139631853 + MER77 LTR ERV1 116 596 -9 27 0 0 0 chrX 37342378 37342405 -139631735 + AT_rich Low_complexity Low_complexity 1 27 0 2284 120 0 0 chrX 37342629 37342928 -139631212 + AluSx SINE Alu 1 299 -13 756 128 8 8 chrX 37342928 37343038 -139631102 - FLAM_C SINE Alu -198 114 2 270 252 71 71 chrX 37343266 37343421 -139630719 - MIR SINE MIR -59 203 49 2200 189 92 15 chrX 37344144 37344600 -139629540 - LTR42 LTR ERVL -2 493 3 298 263 128 64 chrX 37345338 37345541 -139628599 + L1M4 LINE L1 3595 3824 -2322 1523 196 22 0 chrX 37345541 37345817 -139628323 + AluJb SINE Alu 3 284 -28 298 263 128 64 chrX 37345817 37345910 -139628230 + L1M4 LINE L1 3824 3910 -2236 495 264 108 17 chrX 37346054 37346285 -139627855 + L1M4 LINE L1 3918 4169 -1977 642 222 0 0 chrX 37346310 37346436 -139627704 + AluJb SINE Alu 7 132 -180 463 296 94 23 chrX 37346437 37346745 -139627395 + L1M4 LINE L1 4164 4493 -1653 405 0 0 0 chrX 37346856 37346901 -139627239 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1885 105 18 11 chrX 37346903 37347180 -139626960 - AluSg SINE Alu -31 279 1 998 216 5 28 chrX 37347781 37347999 -139626141 + AluSg/x SINE Alu 83 295 -15 1735 171 0 0 chrX 37348657 37348944 -139625196 + AluSx SINE Alu 1 287 -25 696 259 11 0 chrX 37349544 37349718 -139624422 + L1MC4 LINE L1 7503 7678 -364 432 202 0 0 chrX 37349748 37349832 -139624308 + AluS SINE Alu 2 85 -227 1032 136 0 6 chrX 37349832 37350001 -139624139 + AluSc SINE Alu 141 308 -1 448 223 36 62 chrX 37350006 37350199 -139623941 + L1MC4 LINE L1 7706 7893 -149 243 61 0 0 chrX 37350224 37350257 -139623883 + (TG)n Simple_repeat Simple_repeat 1 33 0 336 233 47 19 chrX 37350275 37350382 -139623758 + L1MC4 LINE L1 7783 8019 -23 394 107 0 40 chrX 37350459 37350534 -139623606 - L1MB2 LINE L1 -2 6169 6098 601 233 0 0 chrX 37350609 37350780 -139623360 - FLAM_A SINE Alu 0 171 1 366 107 0 0 chrX 37351879 37351935 -139622205 + (CA)n Simple_repeat Simple_repeat 2 57 0 877 138 12 30 chrX 37352870 37353037 -139621103 - FRAM SINE Alu -2 164 1 22 35 0 0 chrX 37353339 37353368 -139620772 + GC_rich Low_complexity Low_complexity 1 29 0 365 231 25 41 chrX 37354119 37354240 -139619900 + L1MDb LINE L1 1293 1411 -4998 1812 174 44 14 chrX 37354252 37354615 -139619525 + MER41D LTR ERV1 1 374 -183 1474 179 0 49 chrX 37354630 37354915 -139619225 + AluJb SINE Alu 14 284 -28 580 277 110 20 chrX 37354943 37355243 -139618897 + L1M4 LINE L1 3841 4167 -1979 681 168 8 8 chrX 37355265 37355396 -139618744 + AluJb SINE Alu 2 132 -180 377 299 60 63 chrX 37355418 37355560 -139618580 + L1M4 LINE L1 4189 4330 -1816 2165 111 3 0 chrX 37355560 37355866 -139618274 + AluSg1 SINE Alu 3 309 0 377 299 60 63 chrX 37355866 37356024 -139618116 + L1M4 LINE L1 4330 4488 -1658 2979 21 0 0 chrX 37356718 37357055 -139617085 + L1PA2 LINE L1 5612 5948 -207 23 68 0 0 chrX 37407078 37407122 -139567018 + AT_rich Low_complexity Low_complexity 1 44 0 43859 33 21 1 chrX 37408174 37414206 -139559934 + L1PA2 LINE L1 1 6155 0 351 274 75 40 chrX 37414918 37415119 -139559021 - L1ME3A LINE L1 0 6170 5963 402 194 24 48 chrX 37415185 37415309 -139558831 - L1ME3A LINE L1 -225 5945 5825 227 370 111 15 chrX 37417062 37417197 -139556943 - L2 LINE L2 -9 3263 3116 772 33 11 0 chrX 37418235 37418325 -139555815 - L1PA5 LINE L1 -6 6148 6058 258 268 122 0 chrX 37418902 37418984 -139555156 - MER5A DNA MER1_type -7 182 91 865 251 0 23 chrX 37421378 37421593 -139552547 + MIR SINE MIR 4 213 -49 1224 191 23 5 chrX 37421733 37421953 -139552187 - MER58A DNA MER1_type 0 224 1 506 57 143 0 chrX 37422176 37422246 -139551894 + MADE1 DNA Mariner 1 80 0 221 386 53 3 chrX 37422827 37422970 -139551170 + MIR SINE MIR 4 152 -72 252 86 0 0 chrX 37423405 37423440 -139550700 + (TA)n Simple_repeat Simple_repeat 2 36 0 1564 182 45 17 chrX 37424554 37424724 -139549416 - AluJo SINE Alu -13 299 116 180 0 0 0 chrX 37424724 37424744 -139549396 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1564 182 45 17 chrX 37424744 37424864 -139549276 - AluJo SINE Alu -196 116 1 21 71 0 0 chrX 37425423 37425465 -139548675 + AT_rich Low_complexity Low_complexity 1 42 0 258 32 0 0 chrX 37425622 37425653 -139548487 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 324 0 0 0 chrX 37425652 37425688 -139548452 + (TG)n Simple_repeat Simple_repeat 2 37 0 925 94 47 0 chrX 37425732 37425859 -139548281 + AluSx SINE Alu 1 133 -180 207 0 0 0 chrX 37425859 37425882 -139548258 + (A)n Simple_repeat Simple_repeat 1 23 0 1329 89 0 0 chrX 37425907 37426075 -139548065 + AluSx SINE Alu 130 297 -15 1502 160 30 4 chrX 37426102 37426364 -139547776 + AluJo SINE Alu 12 280 -32 1215 181 3 101 chrX 37426385 37426723 -139547417 - L1MD2 LINE L1 -30 6329 6025 2233 42 0 4 chrX 37426853 37427114 -139547026 - AluY SINE Alu -10 301 42 1455 185 59 20 chrX 37427749 37428090 -139546050 + L1MA9 LINE L1 5921 6274 -38 889 274 80 29 chrX 37429910 37430343 -139543797 + L1MC4a LINE L1 5532 5988 -133 2210 126 0 0 chrX 37430343 37430645 -139543495 - AluJb SINE Alu -10 302 1 889 274 80 29 chrX 37430645 37430686 -139543454 + L1MC4a LINE L1 5988 6025 -96 1025 197 83 89 chrX 37431492 37431852 -139542288 + L1MC4 LINE L1 7682 8039 -3 2147 146 52 0 chrX 37432057 37432386 -139541754 - MER7A DNA MER2_type 0 346 3 1846 178 0 6 chrX 37432402 37432716 -139541424 - AluJb SINE Alu 0 312 1 217 286 0 0 chrX 37433355 37433411 -139540729 + CT-rich Low_complexity Low_complexity 1 56 0 396 149 40 0 chrX 37435306 37435380 -139538760 + MER116 DNA Mariner 4 80 0 539 283 115 16 chrX 37436179 37436370 -139537770 + MIR SINE MIR 53 262 0 195 69 0 0 chrX 37437088 37437117 -139537023 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 760 235 121 79 chrX 37437137 37437592 -139536548 + L1ME4a LINE L1 5648 6121 0 1687 196 6 6 chrX 37437636 37437948 -139536192 + AluJb SINE Alu 1 312 0 429 285 22 51 chrX 37439259 37439396 -139534744 - MIR SINE MIR -56 152 20 273 292 83 121 chrX 37439599 37439962 -139534178 - L2 LINE L2 -5 3267 2919 198 0 0 0 chrX 37443959 37443981 -139530159 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2207 108 0 23 chrX 37444342 37444649 -139529491 - AluSc SINE Alu -9 300 1 22 0 0 0 chrX 37445035 37445057 -139529083 + AT_rich Low_complexity Low_complexity 1 22 0 184 303 71 10 chrX 37445414 37445513 -139528627 - L3 LINE CR1 -23 1554 1450 629 258 60 43 chrX 37446863 37447096 -139527044 + MIR SINE MIR 1 237 -25 314 206 272 0 chrX 37448764 37448856 -139525284 + MER94 DNA DNA 3 119 -15 903 159 0 8 chrX 37449340 37449472 -139524668 - FLAM_C SINE Alu -1 132 2 226 248 60 120 chrX 37449788 37449905 -139524235 + MER5A DNA MER1_type 17 126 -63 358 191 12 60 chrX 37449992 37450076 -139524064 + L2 LINE L2 3184 3263 -9 439 338 0 0 chrX 37450275 37450408 -139523732 + MIR SINE MIR 59 191 -71 417 258 0 10 chrX 37450508 37450605 -139523535 - L2 LINE L2 -5 3267 3172 1738 149 4 0 chrX 37450651 37450913 -139523227 - AluJb SINE Alu -19 293 31 180 343 180 12 chrX 37451393 37451565 -139522575 - MIR SINE MIR -50 212 12 696 301 103 32 chrX 37452132 37452296 -139521844 + L2 LINE L2 2676 2827 -486 2925 129 50 5 chrX 37452296 37452738 -139521402 + MLT1C LTR MaLR 5 466 -1 696 301 103 32 chrX 37452738 37453075 -139521065 + L2 LINE L2 2827 3211 -102 937 138 29 29 chrX 37453076 37453250 -139520890 - FRAM SINE Alu -7 169 1 236 277 48 48 chrX 37453256 37453339 -139520801 + L2 LINE L2 3228 3310 -3 268 277 64 21 chrX 37453362 37453456 -139520684 - L2 LINE L2 -6 3266 3169 905 244 28 40 chrX 37453492 37453742 -139520398 + MIR SINE MIR 2 248 -14 605 254 0 23 chrX 37454010 37454140 -139520000 - L2 LINE L2 -1 3312 3186 592 287 45 49 chrX 37454382 37454629 -139519511 - MIR SINE MIR -16 246 1 1496 206 57 7 chrX 37454773 37455069 -139519071 - MLT1E LTR MaLR 0 593 283 296 167 0 0 chrX 37455072 37455120 -139519020 - MLT2D LTR ERVL 0 397 350 252 86 0 0 chrX 37455120 37455155 -139518985 + (TG)n Simple_repeat Simple_repeat 1 35 0 1890 189 27 11 chrX 37455163 37455528 -139518612 - MLT2D LTR ERVL -41 373 3 556 194 0 19 chrX 37455682 37455785 -139518355 - MLT1E LTR MaLR -492 101 1 887 277 93 95 chrX 37455785 37456481 -139517659 - MLT1E-int LTR MaLR 0 1371 677 1145 198 60 8 chrX 37456680 37456932 -139517208 - MLT1E-int LTR MaLR -765 606 342 197 219 0 0 chrX 37456934 37456975 -139517165 + L2 LINE L2 3257 3297 -16 225 299 52 13 chrX 37456998 37457075 -139517065 + MIR SINE MIR 139 218 -44 4350 106 3 54 chrX 37457085 37457728 -139516412 + MER4B LTR ERV1 1 610 0 570 238 88 25 chrX 37457754 37457914 -139516226 + MLT1B LTR MaLR 1 170 -204 1553 149 127 38 chrX 37458012 37458623 -139515517 - LTR8A LTR ERV1 0 727 2 867 241 0 0 chrX 37458624 37458794 -139515346 + MLT1B LTR MaLR 217 386 -4 303 134 0 19 chrX 37458924 37458990 -139515150 + AluJb SINE Alu 1 40 -262 1988 125 119 9 chrX 37458992 37459329 -139514811 - MER51B LTR ERV1 -2 375 2 1754 149 0 4 chrX 37459330 37459591 -139514549 + AluJb SINE Alu 37 296 -16 263 260 40 20 chrX 37459648 37459660 -139514480 - HAL1b LINE L1 -49 1299 1288 293 302 76 23 chrX 37459660 37459832 -139514308 - L1ME4a LINE L1 -73 6048 1198 896 211 22 93 chrX 37460702 37460972 -139513168 + MIR SINE MIR 5 255 -7 1509 163 73 35 chrX 37461018 37461306 -139512834 - AluJb SINE Alu -13 299 1 206 255 266 11 chrX 37461532 37461626 -139512514 + MER5A DNA MER1_type 49 166 -23 * 584 186 20 0 chrX 37461550 37461652 -139512488 - MER5A DNA MER1_type -77 112 9 198 0 0 0 chrX 37461848 37461870 -139512270 + (A)n Simple_repeat Simple_repeat 1 22 0 2902 127 23 26 chrX 37461870 37462475 -139511665 - MER4E LTR ERV1 0 779 2 2701 81 46 44 chrX 37462721 37463289 -139510851 + MER51A LTR ERV1 1 634 0 463 127 28 0 chrX 37463709 37463780 -139510360 + LTR8A LTR ERV1 1 73 -654 1153 119 0 0 chrX 37463783 37463934 -139510206 - AluSx SINE Alu -49 263 113 761 124 19 0 chrX 37463986 37464091 -139510049 - AluSx SINE Alu -205 108 2 1879 213 95 32 chrX 37464092 37464618 -139509522 + LTR8 LTR ERV1 133 691 0 441 273 67 13 chrX 37464701 37464851 -139509289 - MIR SINE MIR 0 262 105 3465 89 13 0 chrX 37465127 37465574 -139508566 - L1PA16 LINE L1 -4 6162 5710 904 293 64 48 chrX 37465995 37466316 -139507824 + L1MC4a LINE L1 5436 5769 -2039 1979 152 0 7 chrX 37466316 37466613 -139507527 + AluJb SINE Alu 1 295 -17 904 293 64 48 chrX 37466613 37466772 -139507368 + L1MC4a LINE L1 5769 5924 -1884 5345 125 34 31 chrX 37467249 37468124 -139506016 - L1MA9 LINE L1 0 6312 5435 4599 150 14 9 chrX 37468124 37468972 -139505168 + L1MA9 LINE L1 4589 5444 -743 3896 208 70 39 chrX 37468971 37469070 -139505070 - L1MD2 LINE L1 -13 6415 6321 * 1773 171 0 20 chrX 37469070 37469363 -139504777 - AluJb SINE Alu -25 287 1 3896 208 70 39 chrX 37469363 37470494 -139503646 - L1MD2 LINE L1 -107 6321 5148 582 288 19 19 chrX 37470495 37470700 -139503440 - L1MD2 LINE L1 -2549 3666 3462 287 261 80 43 chrX 37470701 37470839 -139503301 - L1MD2 LINE L1 -3925 2471 2329 2005 141 0 0 chrX 37470844 37471134 -139503006 - AluJb SINE Alu -22 290 1 3386 209 68 45 chrX 37471160 37471773 -139502367 + L1MDa LINE L1 1262 1912 -4628 2149 93 52 3 chrX 37471773 37472064 -139502076 - L1PA16 LINE L1 -9 6157 5853 3386 209 68 45 chrX 37472064 37472525 -139501615 + L1MDa LINE L1 1912 2361 -4179 832 110 93 0 chrX 37473042 37473160 -139500980 + FLAM_C SINE Alu 1 129 -4 271 327 105 12 chrX 37473288 37473450 -139500690 - MIR SINE MIR -4 258 82 297 311 30 30 chrX 37473537 37473669 -139500471 + L2 LINE L2 2881 3012 -260 295 227 0 40 chrX 37473674 37473749 -139500391 + L2 LINE L2 3201 3272 0 730 200 68 63 chrX 37474516 37474721 -139499419 - MIR SINE MIR 0 262 57 856 124 15 15 chrX 37475411 37475548 -139498592 - FRAM SINE Alu -19 157 21 182 327 0 0 chrX 37475843 37475895 -139498245 + L2 LINE L2 3249 3300 -13 186 43 0 0 chrX 37475895 37475918 -139498222 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 541 257 145 37 chrX 37476217 37476431 -139497709 + MLT1J LTR MaLR 238 474 -37 295 185 19 0 chrX 37476564 37476618 -139497522 - L2 LINE L2 -4 3309 3255 284 0 28 0 chrX 37476968 37477004 -139497136 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 967 92 40 6 chrX 37477007 37477180 -139496960 + CT-rich Low_complexity Low_complexity 2 180 0 1744 158 13 26 chrX 37477182 37477486 -139496654 - AluJb SINE Alu -12 300 1 5936 127 17 6 chrX 37477487 37478367 -139495773 - MER49 LTR ERV1 -33 890 1 1515 222 39 129 chrX 37478402 37478513 -139495627 + Charlie7 DNA MER1_type 43 162 -2450 6373 30 0 0 chrX 37478513 37479213 -139494927 + L1PA4 LINE L1 5456 6155 0 1515 222 39 129 chrX 37479213 37479533 -139494607 + Charlie7 DNA MER1_type 162 380 -2232 2228 106 0 31 chrX 37479533 37479818 -139494322 + AluSp SINE Alu 1 276 -37 303 28 0 0 chrX 37479818 37479854 -139494286 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2228 106 0 31 chrX 37479854 37479889 -139494251 + AluSp SINE Alu 276 311 -2 1515 222 39 129 chrX 37479889 37480207 -139493933 + Charlie7 DNA MER1_type 380 725 -1887 196 320 90 8 chrX 37480347 37480469 -139493671 + L2 LINE L2 2537 2668 -646 275 352 0 0 chrX 37480617 37480688 -139493452 + Charlie1 DNA MER1_type 1 71 -2690 * 1757 147 38 103 chrX 37480686 37480790 -139493350 + Charlie1 DNA MER1_type 2343 2452 -309 2161 130 0 22 chrX 37480790 37481106 -139493034 - AluSx SINE Alu -3 309 1 1757 147 38 103 chrX 37481106 37481270 -139492870 + Charlie1 DNA MER1_type 2452 2573 -188 2245 125 0 0 chrX 37481270 37481575 -139492565 - AluSx SINE Alu -7 305 1 1757 147 38 103 chrX 37481575 37481753 -139492387 + Charlie1 DNA MER1_type 2573 2761 0 196 312 80 43 chrX 37481759 37481897 -139492243 + L2 LINE L2 2766 2908 -406 231 114 0 0 chrX 37481946 37481990 -139492150 + (TTTA)n Simple_repeat Simple_repeat 4 47 0 979 92 0 0 chrX 37481990 37482109 -139492031 - FLAM_C SINE Alu -24 119 1 336 226 39 59 chrX 37482179 37482281 -139491859 - LTR67 LTR ERVL -2 555 456 281 246 231 31 chrX 37482705 37482835 -139491305 - MIR3 SINE MIR -36 172 17 257 184 0 0 chrX 37482933 37482982 -139491158 - L2 LINE L2 -1 3271 3223 271 176 46 23 chrX 37483337 37483419 -139490721 + MIR SINE MIR 108 191 -51 278 173 49 74 chrX 37483429 37483510 -139490630 - LTR67 LTR ERVL -4 553 475 407 306 153 19 chrX 37484382 37484591 -139489549 - MLT1L LTR MaLR -343 272 36 1641 130 183 0 chrX 37484597 37484859 -139489281 + AluSx SINE Alu 1 310 -2 809 206 42 69 chrX 37485209 37485326 -139488814 + MIR SINE MIR 6 125 -137 1866 163 10 0 chrX 37485326 37485621 -139488519 - AluJb SINE Alu -14 298 1 809 206 42 69 chrX 37485621 37485765 -139488375 + MIR SINE MIR 125 260 -2 319 246 44 18 chrX 37485805 37485919 -139488221 + L1ME4a LINE L1 5999 6115 -6 2070 125 7 23 chrX 37486313 37486617 -139487523 + AluSx SINE Alu 1 299 -13 2328 107 0 0 chrX 37486987 37487296 -139486844 - AluSc SINE Alu 0 309 1 1786 154 7 0 chrX 37487685 37487987 -139486153 + AluJb SINE Alu 1 304 0 697 273 60 9 chrX 37489311 37489527 -139484613 + MIR SINE MIR 36 262 0 180 369 73 15 chrX 37489531 37489737 -139484403 + L2 LINE L2 2760 2977 -337 306 0 0 0 chrX 37490207 37490241 -139483899 + (CA)n Simple_repeat Simple_repeat 1 34 0 201 104 42 42 chrX 37490274 37490322 -139483818 + (TTATA)n Simple_repeat Simple_repeat 3 50 0 282 150 68 14 chrX 37490325 37490472 -139483668 + (TATAA)n Simple_repeat Simple_repeat 3 157 0 330 162 29 52 chrX 37490475 37490611 -139483529 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1318 222 10 113 chrX 37491154 37491641 -139482499 + L2 LINE L2 2473 2909 -405 483 213 37 0 chrX 37491645 37491753 -139482387 + MER20B DNA MER1_type 657 768 -15 2652 192 6 64 chrX 37491928 37491941 -139482199 + MLT1F LTR MaLR 1 13 -529 2427 104 150 5 chrX 37491941 37492315 -139481825 - MSTA LTR MaLR 0 428 1 2652 192 6 64 chrX 37492315 37492797 -139481343 + MLT1F LTR MaLR 13 464 -78 1201 172 72 79 chrX 37492797 37493087 -139481053 - AluJo SINE Alu -24 288 1 2652 192 6 64 chrX 37493087 37493138 -139481002 + MLT1F LTR MaLR 464 516 -26 518 208 85 39 chrX 37493180 37493310 -139480830 + L2 LINE L2 3178 3313 0 1145 313 50 39 chrX 37493322 37493923 -139480217 + L1M4 LINE L1 4164 4780 -1366 2328 87 3 32 chrX 37493923 37494234 -139479906 + AluSq SINE Alu 1 302 -11 1145 313 50 39 chrX 37494234 37494516 -139479624 + L1M4 LINE L1 4780 5057 -1089 343 109 0 0 chrX 37494669 37494724 -139479416 - Alu SINE Alu -2 300 246 2149 116 3 7 chrX 37494757 37495060 -139479080 + AluSq SINE Alu 1 302 -11 1807 170 3 3 chrX 37495147 37495459 -139478681 - AluJb SINE Alu 0 312 1 579 101 0 0 chrX 37495561 37495640 -139478500 - L1MC1 LINE L1 0 6333 6255 306 284 108 34 chrX 37495753 37495929 -139478211 + L1M4b LINE L1 11 199 -6660 1578 224 60 69 chrX 37495932 37496573 -139477567 + L1M4b LINE L1 798 1411 -5448 2345 95 0 0 chrX 37496573 37496877 -139477263 + AluSq SINE Alu 1 304 -9 1578 224 60 69 chrX 37496877 37497087 -139477053 + L1M4b LINE L1 1411 1621 -5238 24 0 0 0 chrX 37497087 37497111 -139477029 + AT_rich Low_complexity Low_complexity 1 24 0 1936 36 0 0 chrX 37497111 37497330 -139476810 + L1PA5 LINE L1 5932 6150 -4 193 75 50 0 chrX 37497357 37497397 -139476743 + (TA)n Simple_repeat Simple_repeat 1 42 0 21 89 0 0 chrX 37497425 37497481 -139476659 + AT_rich Low_complexity Low_complexity 1 56 0 34 89 0 0 chrX 37497530 37497620 -139476520 + AT_rich Low_complexity Low_complexity 1 90 0 579 257 28 17 chrX 37497733 37497878 -139476262 - L1M4b LINE L1 -5435 1424 1275 3154 85 27 38 chrX 37497878 37498327 -139475813 + MLT2A1 LTR ERVL 1 444 0 579 257 28 17 chrX 37498327 37498360 -139475780 - L1M4b LINE L1 -5584 1275 1244 503 229 8 0 chrX 37498544 37498662 -139475478 + L1M4b LINE L1 1633 1751 -5104 1437 105 0 0 chrX 37498666 37498847 -139475293 + AluSq SINE Alu 1 181 -132 1884 233 58 41 chrX 37498927 37499460 -139474680 + MLT1E1 LTR MaLR 1 542 -112 1846 183 14 17 chrX 37499464 37499831 -139474309 + MLT1A1 LTR MaLR 5 365 0 412 134 30 0 chrX 37499831 37499897 -139474243 + MLT1E3 LTR MaLR 477 544 -49 1089 33 0 0 chrX 37499904 37500026 -139474114 - L1PA4 LINE L1 -8 6147 6026 484 62 15 0 chrX 37500058 37500123 -139474017 + MLT1E3 LTR MaLR 559 624 0 258 212 0 76 chrX 37500217 37500283 -139473857 + MER102b DNA MER1_type 27 87 -254 569 141 10 20 chrX 37500283 37500382 -139473758 + AluJo SINE Alu 39 136 -176 688 294 71 4 chrX 37500388 37500626 -139473514 + MER102b DNA MER1_type 88 341 0 3124 203 48 73 chrX 37501150 37501983 -139472157 - MER21B LTR ERV1 -51 812 1 2152 217 69 50 chrX 37502056 37502734 -139471406 - LTR8 LTR ERV1 0 691 1 507 241 153 39 chrX 37503334 37503377 -139470763 + L1MC/D LINE L1 5269 5306 -2502 2793 146 11 16 chrX 37503377 37503822 -139470318 - LTR47B LTR ERVL 0 443 1 507 241 153 39 chrX 37503822 37504060 -139470080 + L1MC/D LINE L1 5306 5582 -2226 644 268 52 11 chrX 37504771 37505109 -139469031 + MLT1K LTR MaLR 190 588 0 351 296 148 34 chrX 37505223 37505635 -139468505 + LTR67 LTR ERVL 99 557 0 1874 124 51 0 chrX 37505690 37505965 -139468175 - AluJb SINE Alu -15 297 9 483 105 22 21 chrX 37506591 37506680 -139467460 - MLT1B LTR MaLR -1 614 312 240 342 165 34 chrX 37506769 37507006 -139467134 - L2 LINE L2 -2 3270 3003 803 138 32 16 chrX 37507269 37507392 -139466748 + AluJb SINE Alu 2 126 -186 424 238 48 24 chrX 37507424 37507550 -139466590 - L1ME3A LINE L1 -15 6155 6027 307 222 42 14 chrX 37507572 37507644 -139466496 - MER81 DNA DNA -15 99 26 2486 138 5 42 chrX 37508032 37508437 -139465703 - MLT1B LTR MaLR 0 390 1 1240 160 11 80 chrX 37508463 37508725 -139465415 + AluJb SINE Alu 50 293 -19 486 290 34 11 chrX 37509660 37509836 -139464304 + MIR SINE MIR 25 204 -58 2827 257 40 122 chrX 37509958 37510509 -139463631 + L2 LINE L2 1300 1895 -1419 2292 38 0 11 chrX 37510509 37510775 -139463365 - L1PA5 LINE L1 -5 6149 5887 543 94 0 24 chrX 37510775 37510860 -139463280 + L1P LINE L1 4957 5039 -1107 2827 257 40 122 chrX 37510860 37511626 -139462514 + L2 LINE L2 1893 2587 -727 327 78 0 0 chrX 37511671 37511722 -139462418 + (TCTCTG)n Simple_repeat Simple_repeat 2 52 0 383 0 21 0 chrX 37511723 37511770 -139462370 + (TG)n Simple_repeat Simple_repeat 1 48 0 395 246 82 0 chrX 37511879 37511989 -139462151 + MIR SINE MIR 123 241 -21 803 199 71 103 chrX 37513220 37513501 -139460639 - L2 LINE L2 0 3313 3042 254 234 91 0 chrX 37513486 37513563 -139460577 - L2 LINE L2 -345 2927 2844 * 3833 194 70 56 chrX 37513595 37513669 -139460471 - L1MC5 LINE L1 -236 7725 7653 2303 98 0 7 chrX 37513669 37513966 -139460174 + AluSq SINE Alu 3 297 -16 3833 194 70 56 chrX 37513966 37514991 -139459149 - L1MC5 LINE L1 -308 7653 6611 877 232 97 4 chrX 37515067 37515304 -139458836 - L2 LINE L2 -600 2714 2456 549 30 0 0 chrX 37516417 37516484 -139457656 + (TC)n Simple_repeat Simple_repeat 2 68 0 306 0 0 0 chrX 37516486 37516520 -139457620 + (CA)n Simple_repeat Simple_repeat 1 34 0 238 293 159 39 chrX 37516809 37517005 -139457135 - MIR SINE MIR -29 233 9 918 201 112 0 chrX 37517005 37517174 -139456966 + MER5A DNA MER1_type 2 189 0 238 293 159 39 chrX 37517174 37517185 -139456955 - MIR SINE MIR -253 9 1 447 312 40 0 chrX 37517600 37517725 -139456415 - L2 LINE L2 -2 3270 3141 318 274 39 39 chrX 37518135 37518237 -139455903 - L2 LINE L2 -28 3244 3143 244 330 47 47 chrX 37518305 37518411 -139455729 - L2 LINE L2 -30 3242 3137 309 373 10 0 chrX 37518954 37519056 -139455084 - L2 LINE L2 -36 3236 3134 296 117 52 26 chrX 37519197 37519274 -139454866 + CT-rich Low_complexity Low_complexity 2 80 0 1932 169 0 6 chrX 37519274 37519588 -139454552 - AluJo SINE Alu 0 312 1 299 308 23 38 chrX 37519837 37519970 -139454170 - L2 LINE L2 -1 3312 3182 306 313 127 0 chrX 37520300 37520434 -139453706 - L2 LINE L2 -5 3308 3158 902 196 92 0 chrX 37521733 37521906 -139452234 + MER5A DNA MER1_type 1 189 0 284 102 20 0 chrX 37522202 37522251 -139451889 + (TC)n Simple_repeat Simple_repeat 1 50 0 212 302 135 0 chrX 37522415 37522511 -139451629 - L2 LINE L2 -20 3252 3144 210 289 0 13 chrX 37522885 37522961 -139451179 + (TTCA)n Simple_repeat Simple_repeat 1 75 0 226 337 12 48 chrX 37523352 37523435 -139450705 - L2 LINE L2 -22 3250 3171 192 300 50 25 chrX 37524139 37524219 -139449921 - L2 LINE L2 -18 3295 3214 192 135 0 0 chrX 37524616 37524653 -139449487 + (TC)n Simple_repeat Simple_repeat 1 37 0 1076 122 24 0 chrX 37525115 37525279 -139448861 + MER5A DNA MER1_type 22 189 0 800 145 118 21 chrX 37525398 37525584 -139448556 - L1MC2 LINE L1 -2 6342 6139 2297 204 34 19 chrX 37525587 37528356 -139445784 - L1MC2 LINE L1 -148 6476 3559 467 172 35 11 chrX 37528356 37528443 -139445697 - L1MA5A LINE L1 -5 6292 6204 202 200 0 0 chrX 37528480 37528520 -139445620 + CT-rich Low_complexity Low_complexity 2 41 0 44001 29 22 1 chrX 37528520 37534549 -139439591 - L1HS LINE L1 0 6155 1 322 301 0 31 chrX 37534608 37534782 -139439358 + CT-rich Low_complexity Low_complexity 1 280 0 3957 217 22 5 chrX 37534832 37535780 -139438360 - L1MC2 LINE L1 -2904 3522 2559 4944 164 68 150 chrX 37535785 37536046 -139438094 - L1MC2 LINE L1 -4871 1555 1274 2214 114 0 16 chrX 37536046 37536361 -139437779 - AluSg SINE Alu 0 310 1 4944 164 68 150 chrX 37536361 37537788 -139436352 - L1MC2 LINE L1 -5152 1274 6 3702 26 22 0 chrX 37538205 37538621 -139435519 - L1PA4 LINE L1 -1 6154 5730 3363 23 3 5 chrX 37538621 37539010 -139435130 + L1PA4 LINE L1 5336 5723 -432 253 271 73 28 chrX 37539139 37539316 -139434824 - L1M4 LINE L1 -1488 4658 4474 335 304 144 11 chrX 37539368 37539638 -139434502 - L1M4 LINE L1 -1753 4393 4088 444 303 35 20 chrX 37539778 37540032 -139434108 - L1M4 LINE L1 -2230 3916 3659 775 227 91 36 chrX 37540479 37540699 -139433441 + Charlie1 DNA MER1_type 7 2476 -285 8218 22 0 0 chrX 37540767 37542158 -139431982 - L1PA3 LINE L1 -5 6150 4760 5733 23 0 0 chrX 37542158 37542810 -139431330 + L1PA3 LINE L1 4087 4738 -1408 664 156 16 8 chrX 37542811 37542933 -139431207 + Charlie1 DNA MER1_type 2639 2761 0 229 258 258 0 chrX 37543232 37543325 -139430815 - L2 LINE L2 -19 3253 3137 211 346 38 38 chrX 37544748 37544881 -139429259 - L2 LINE L2 -462 2852 2720 1554 227 89 23 chrX 37546728 37547247 -139426893 + L1MC4 LINE L1 6501 7053 -989 21 36 0 0 chrX 37547247 37547275 -139426865 + AT_rich Low_complexity Low_complexity 1 28 0 1270 251 6 9 chrX 37547297 37547644 -139426496 + L1MC4 LINE L1 7234 7579 -463 2356 185 69 63 chrX 37547682 37548040 -139426100 - MER99 DNA DNA -6 822 457 1780 154 0 49 chrX 37548040 37548346 -139425794 + AluJb SINE Alu 1 291 -21 2356 185 69 63 chrX 37548346 37548610 -139425530 - MER99 DNA DNA -371 457 196 2474 83 0 0 chrX 37548734 37549036 -139425104 - AluSx SINE Alu -10 302 1 469 216 67 8 chrX 37549154 37549288 -139424852 - LTR16A1 LTR ERVL 0 457 316 864 64 24 0 chrX 37549586 37549711 -139424429 - L1MA6 LINE L1 0 6300 6173 6052 160 106 48 chrX 37549754 37551248 -139422892 + THE1C-int LTR MaLR 1 1580 0 1684 140 49 83 chrX 37551250 37551636 -139422504 + THE1C LTR MaLR 3 375 0 642 234 21 21 chrX 37551637 37551825 -139422315 - L1M4 LINE L1 -1511 4635 4448 974 232 75 15 chrX 37552419 37552686 -139421454 + L1MEc LINE L1 20 302 -6094 719 182 176 0 chrX 37552691 37552786 -139421354 + L1MA9 LINE L1 6048 6125 -187 234 0 0 0 chrX 37552786 37552812 -139421328 + (CA)n Simple_repeat Simple_repeat 2 27 0 719 182 176 0 chrX 37552812 37552892 -139421248 + L1MA9 LINE L1 6125 6254 -58 236 212 24 47 chrX 37552961 37553013 -139421127 + A-rich Low_complexity Low_complexity 2 53 -31 448 116 0 0 chrX 37553013 37553082 -139421058 + L1MA9 LINE L1 6239 6307 -5 236 212 24 47 chrX 37553082 37553114 -139421026 + A-rich Low_complexity Low_complexity 53 84 0 472 287 27 0 chrX 37553180 37553403 -139420737 + L1MEc LINE L1 378 656 -5740 2961 158 52 32 chrX 37553403 37554080 -139420060 - MER67C LTR ERV1 0 710 21 2802 245 60 35 chrX 37554093 37555246 -139418894 + L1MEc LINE L1 653 1834 -4562 2243 68 51 3 chrX 37555287 37555579 -139418561 - AluSg SINE Alu -4 306 1 6819 236 39 35 chrX 37555900 37556028 -139418112 + L1M4 LINE L1 2900 3026 -3120 5338 45 0 5 chrX 37556028 37556678 -139417462 - L1PA6 LINE L1 -2 6152 5506 6819 236 39 35 chrX 37556678 37558645 -139415495 + L1M4 LINE L1 3026 5010 -1136 2308 93 3 16 chrX 37558645 37558981 -139415159 + AluSp SINE Alu 1 313 0 6819 236 39 35 chrX 37558981 37559293 -139414847 + L1M4 LINE L1 5010 5319 -827 258 116 0 0 chrX 37559357 37559400 -139414740 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 460 258 131 25 chrX 37559461 37559821 -139414319 + L1M4 LINE L1 3633 4030 -2116 409 286 95 16 chrX 37559824 37560128 -139414012 + L1M4 LINE L1 4102 4429 -1717 1890 234 56 30 chrX 37560206 37560978 -139413162 - L2 LINE L2 -5 3308 2502 977 137 86 15 chrX 37560979 37561176 -139412964 + MER2 DNA MER2_type 1 211 -134 1331 261 18 9 chrX 37561262 37561588 -139412552 - L2 LINE L2 -858 2456 2128 2267 236 282 96 chrX 37561961 37562228 -139411912 + L2 LINE L2 8 224 -3090 283 283 115 0 chrX 37562228 37562341 -139411799 - MER94 DNA DNA -7 127 2 2267 236 282 96 chrX 37562341 37563498 -139410642 + L2 LINE L2 224 1829 -1485 1334 204 36 4 chrX 37563498 37563969 -139410171 - L1MD2 LINE L1 -10 6349 5815 258 158 0 35 chrX 37564838 37564895 -139409245 - L1MD2 LINE L1 -2419 5623 5569 1707 111 4 4 chrX 37564899 37565134 -139409006 + AluSg/x SINE Alu 76 310 -2 3445 246 98 29 chrX 37565157 37566502 -139407638 - L2 LINE L2 -67 3246 1823 715 193 78 6 chrX 37566503 37566669 -139407471 + L1MDa LINE L1 9 186 -6354 2549 207 67 41 chrX 37566670 37567531 -139406609 + L1MDa LINE L1 660 1687 -4853 201 208 0 83 chrX 37567540 37567588 -139406552 + L2 LINE L2 3252 3295 -18 27 0 0 0 chrX 37567675 37567702 -139406438 + AT_rich Low_complexity Low_complexity 1 27 0 540 226 0 90 chrX 37567920 37568097 -139406043 - L2 LINE L2 -437 2877 2717 267 317 25 56 chrX 37568643 37568804 -139405336 + MIR SINE MIR 55 210 -52 1034 224 110 0 chrX 37568897 37569187 -139404953 + MER5C DNA MER1_type 3 324 0 2230 107 0 10 chrX 37569478 37569776 -139404364 - AluSx SINE Alu -17 295 1 995 251 77 40 chrX 37569969 37569989 -139404151 - L1MC4a LINE L1 -1961 5847 5829 1793 193 7 0 chrX 37569989 37570289 -139403851 - AluJo SINE Alu -10 302 1 995 251 77 40 chrX 37570289 37570615 -139403525 - L1MC4a LINE L1 -1979 5829 5516 243 88 0 0 chrX 37570615 37570649 -139403491 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1959 134 0 0 chrX 37570655 37570930 -139403210 - AluSx SINE Alu -37 275 1 995 251 77 40 chrX 37570930 37571045 -139403095 - L1MC4a LINE L1 -2296 5512 5361 265 236 0 18 chrX 37571248 37571303 -139402837 + L2 LINE L2 3202 3255 -17 630 215 230 20 chrX 37571995 37572195 -139401945 - MIR SINE MIR 0 262 21 2190 86 18 0 chrX 37572646 37572925 -139401215 - AluSq SINE Alu -29 284 1 253 352 72 53 chrX 37573064 37573328 -139400812 + L2 LINE L2 2696 2964 -350 3600 149 52 2 chrX 37573449 37574086 -139400054 + LTR65 LTR ERV1 1 669 0 390 255 0 41 chrX 37574188 37574286 -139399854 + MIR SINE MIR 50 143 -65 363 295 108 8 chrX 37574308 37574437 -139399703 + MIR SINE MIR 21 162 -100 586 228 74 12 chrX 37574521 37574683 -139399457 + MIR SINE MIR 73 244 -18 2073 58 48 65 chrX 37576608 37576918 -139397222 - AluSx SINE Alu -7 305 1 233 239 149 37 chrX 37577061 37577195 -139396945 - L1ME4a LINE L1 -8 6113 5965 604 294 218 18 chrX 37579118 37579553 -139394587 - L2 LINE L2 -470 2844 2323 629 219 56 124 chrX 37579990 37580107 -139394033 + MIR SINE MIR 46 141 -121 4246 110 14 1 chrX 37580107 37580760 -139393380 + L1MA4 LINE L1 5629 6289 -11 629 219 56 124 chrX 37580760 37580875 -139393265 + MIR SINE MIR 141 262 0 402 263 144 38 chrX 37581066 37581107 -139393033 - MIR3 SINE MIR -14 194 159 2455 50 0 0 chrX 37581107 37581404 -139392736 + AluY SINE Alu 1 297 -14 402 263 144 38 chrX 37581404 37581522 -139392618 - MIR3 SINE MIR -49 159 18 377 333 16 24 chrX 37581866 37581989 -139392151 - L2 LINE L2 -1 3271 3150 307 270 90 11 chrX 37582110 37582199 -139391941 - MER5B DNA MER1_type -23 155 60 897 261 161 40 chrX 37582493 37583015 -139391125 + L1ME4a LINE L1 5291 5875 -246 1248 199 21 8 chrX 37583070 37583306 -139390834 + MER8 DNA MER2_type 1 239 0 572 265 41 7 chrX 37583309 37583451 -139390689 + MIR SINE MIR 18 164 -98 718 203 55 6 chrX 37583451 37583614 -139390526 + MER5B DNA MER1_type 2 172 -6 253 211 224 0 chrX 37583634 37583710 -139390430 + MIR SINE MIR 170 262 0 307 210 120 0 chrX 37583966 37584066 -139390074 + L1ME4a LINE L1 5711 5822 -299 1583 135 22 94 chrX 37584071 37584390 -139389750 + AluJo SINE Alu 1 296 -16 1772 164 0 0 chrX 37584403 37584677 -139389463 - AluJb SINE Alu -36 276 3 317 216 58 14 chrX 37584773 37584912 -139389228 + L1ME4a LINE L1 5976 6120 -1 33 25 0 0 chrX 37585690 37585730 -139388410 + AT_rich Low_complexity Low_complexity 1 40 0 237 320 150 10 chrX 37585907 37586007 -139388133 + MIR SINE MIR 22 135 -127 918 150 47 52 chrX 37586008 37586221 -139387919 + MIR SINE MIR 16 227 -35 472 246 53 86 chrX 37586376 37586563 -139387577 - MIR3 SINE MIR -25 183 3 816 302 81 36 chrX 37587836 37588350 -139385790 - L2 LINE L2 -3 3310 2773 284 310 0 23 chrX 37588413 37588500 -139385640 + L2 LINE L2 3186 3270 -2 196 263 26 53 chrX 37588491 37588567 -139385573 + MIR SINE MIR 139 212 -50 * 759 188 51 7 chrX 37589403 37589541 -139384599 + FRAM SINE Alu 1 138 -38 296 265 17 17 chrX 37589543 37589660 -139384480 + L1MC4a LINE L1 5821 5937 -1871 7040 31 3 1 chrX 37590653 37592245 -139381895 + L1PA5 LINE L1 4542 6134 -20 193 269 0 0 chrX 37592438 37592490 -139381650 + L2 LINE L2 2706 2757 -557 339 236 264 0 chrX 37592522 37592632 -139381508 + MIR SINE MIR 32 170 -92 239 133 0 22 chrX 37592683 37592728 -139381412 - MER94 DNA DNA -85 49 6 184 236 109 0 chrX 37592732 37592787 -139381353 + MIR SINE MIR 168 228 -34 206 335 127 32 chrX 37592868 37593089 -139381051 + L2 LINE L2 2996 3237 -35 549 256 218 19 chrX 37593334 37593508 -139380632 + MIR SINE MIR 10 234 -28 2026 123 21 0 chrX 37593508 37593792 -139380348 + AluSx SINE Alu 1 290 -22 549 256 218 19 chrX 37593792 37593828 -139380312 + MIR SINE MIR 234 262 0 207 0 0 0 chrX 37594384 37594407 -139379733 + (T)n Simple_repeat Simple_repeat 1 23 0 14097 29 2 1 chrX 37594876 37597326 -139376814 - L1PA5 LINE L1 -8 6146 3695 215 373 79 16 chrX 37597635 37597761 -139376379 - L3 LINE CR1 -512 1065 932 601 152 0 0 chrX 37597815 37597907 -139376233 - U6 snRNA snRNA -15 92 1 1874 109 20 59 chrX 37597914 37598217 -139375923 - AluSc SINE Alu -18 291 1 2143 113 3 3 chrX 37598227 37598520 -139375620 - AluSx SINE Alu -19 293 1 2191 221 78 28 chrX 37598670 37599235 -139374905 - MLT1E LTR MaLR 0 593 1 2307 95 23 0 chrX 37599281 37599585 -139374555 - AluSp SINE Alu -2 311 1 394 309 62 12 chrX 37599606 37599768 -139374372 - L3 LINE CR1 -1004 573 404 345 253 202 15 chrX 37599785 37599983 -139374157 - L2 LINE L2 -953 2361 2127 199 240 67 13 chrX 37599983 37600058 -139374082 - L3 LINE CR1 -1137 440 362 226 231 48 115 chrX 37600264 37600368 -139373772 + MIR3 SINE MIR 99 195 -13 211 338 108 19 chrX 37600409 37600622 -139373518 + L2 LINE L2 1977 2208 -1106 309 223 81 81 chrX 37600633 37600781 -139373359 - L1ME4a LINE L1 0 6121 5974 1352 154 19 0 chrX 37601600 37601814 -139372326 + MER20 DNA MER1_type 2 219 0 295 374 0 41 chrX 37602188 37602311 -139371829 - MIR3 SINE MIR -81 127 10 611 238 116 0 chrX 37602860 37603032 -139371108 - MIR SINE MIR -1 261 70 1160 132 17 101 chrX 37603035 37603172 -139370968 + MER33 DNA MER1_type 61 163 -2422 1705 121 24 91 chrX 37603172 37603545 -139370595 - L1MA3 LINE L1 0 6305 5958 1160 132 17 101 chrX 37603545 37603695 -139370445 + MER33 DNA MER1_type 163 324 0 233 303 39 122 chrX 37603924 37604178 -139369962 - L2 LINE L2 -48 3224 2992 21 0 0 0 chrX 37605183 37605204 -139368936 + AT_rich Low_complexity Low_complexity 1 21 0 2385 67 14 3 chrX 37605353 37605650 -139368490 - AluSp SINE Alu -13 300 1 1812 197 0 0 chrX 37605760 37606070 -139368070 - AluJo SINE Alu -2 310 1 542 267 26 10 chrX 37606086 37606281 -139367859 - L1ME4a LINE L1 -320 5801 5604 22 35 0 0 chrX 37606464 37606493 -139367647 + AT_rich Low_complexity Low_complexity 1 29 0 938 268 53 38 chrX 37606643 37606707 -139367433 + MER115 DNA AcHobo 93 155 -538 1417 103 75 0 chrX 37606707 37606921 -139367219 - MER30 DNA MER1_type 0 230 1 938 268 53 38 chrX 37606921 37607195 -139366945 + MER115 DNA AcHobo 155 436 -257 265 264 0 0 chrX 37607201 37607254 -139366886 + Zaphod DNA AcHobo 3978 4030 -1 315 256 73 0 chrX 37607363 37607445 -139366695 - MIR SINE MIR -58 150 63 282 261 0 76 chrX 37607482 37607574 -139366566 + MIR SINE MIR 38 122 -86 747 232 50 6 chrX 37608745 37608926 -139365214 + MIR SINE MIR 23 211 -51 354 243 162 15 chrX 37608965 37609101 -139365039 - L3 LINE CR1 -165 1412 1257 669 337 61 76 chrX 37609242 37609481 -139364659 - L3 LINE CR1 -351 1226 985 2355 90 0 3 chrX 37609481 37609781 -139364359 + AluSx SINE Alu 1 299 -13 669 337 61 76 chrX 37609781 37610214 -139363926 - L3 LINE CR1 -592 985 564 1538 203 50 87 chrX 37610232 37610795 -139363345 - L1MD2 LINE L1 -15 6344 5803 609 367 94 50 chrX 37611989 37613473 -139360667 + L2 LINE L2 366 1913 -1401 594 315 34 21 chrX 37613768 37614006 -139360134 - MIR SINE MIR -16 246 6 394 220 37 0 chrX 37614744 37614853 -139359287 + LTR65 LTR ERV1 58 170 -499 390 274 56 13 chrX 37614983 37615178 -139358962 + LTR65 LTR ERV1 403 663 -6 216 250 0 0 chrX 37616506 37616554 -139357586 - L2 LINE L2 -5 3308 3261 22 35 0 0 chrX 37616782 37616811 -139357329 + AT_rich Low_complexity Low_complexity 1 29 0 895 261 29 1 chrX 37616817 37617039 -139357101 - MIR SINE MIR -28 234 9 28 0 0 0 chrX 37617201 37617229 -139356911 + AT_rich Low_complexity Low_complexity 1 28 0 208 87 22 65 chrX 37617233 37617279 -139356861 - MIR SINE MIR -13 249 206 3626 233 75 13 chrX 37617747 37619095 -139355045 - L1M4 LINE L1 -1643 4503 3072 * 7604 0 0 0 chrX 37619081 37619963 -139354177 - L1HS LINE L1 0 6155 5274 * 11955 22 0 1 chrX 37619961 37621431 -139352709 + L1HS LINE L1 3820 5288 -858 2805 224 46 25 chrX 37621433 37621535 -139352605 - L1M4 LINE L1 -3004 3142 3044 2318 126 0 0 chrX 37621535 37621844 -139352296 - AluSx SINE Alu -3 309 1 2805 224 46 25 chrX 37621844 37622715 -139351425 - L1M4 LINE L1 -3102 3044 2148 3579 142 43 31 chrX 37622721 37623402 -139350738 - L1MB8 LINE L1 -9 6980 6292 1966 205 63 11 chrX 37623402 37623680 -139350460 - L1MB8 LINE L1 -1627 5330 5068 485 100 11 0 chrX 37623680 37623770 -139350370 + (TA)n Simple_repeat Simple_repeat 1 91 0 1966 205 63 11 chrX 37623770 37624048 -139350092 - L1MB8 LINE L1 -1889 5068 4745 899 242 78 17 chrX 37624114 37624407 -139349733 - L1MB8 LINE L1 -6536 323 13 864 202 50 57 chrX 37624443 37624579 -139349561 - L1MC4 LINE L1 -4 8038 7903 414 0 0 0 chrX 37624579 37624625 -139349515 + (TG)n Simple_repeat Simple_repeat 2 47 0 864 202 50 57 chrX 37624625 37624770 -139349370 - L1MC4 LINE L1 -139 7903 7759 359 287 85 58 chrX 37624960 37625148 -139348992 - MIR SINE MIR -50 212 20 1340 41 41 0 chrX 37625831 37626001 -139348139 - L1PA4 LINE L1 -3 6152 5976 529 119 0 0 chrX 37626006 37626090 -139348050 - L1MB8 LINE L1 0 6178 6095 458 190 7 36 chrX 37626090 37626235 -139347905 + Tigger5 DNA MER2_type 1 194 -2129 * 508 123 0 12 chrX 37626232 37626313 -139347827 + Tigger5 DNA MER2_type 2244 2323 0 2026 148 71 0 chrX 37626320 37626438 -139347702 - L1MB7 LINE L1 -118 6066 5949 375 271 64 51 chrX 37626438 37626752 -139347388 - L1ME4a LINE L1 -187 5934 5617 522 266 68 13 chrX 37626969 37627147 -139346993 - MIR SINE MIR -68 140 1 271 211 11 142 chrX 37627204 37627394 -139346746 - L2 LINE L2 -819 2495 2331 454 294 61 50 chrX 37627400 37627580 -139346560 - L2 LINE L2 -4 3268 3087 1007 66 22 7 chrX 37627587 37627724 -139346416 + MER85 DNA T2_type 1 139 0 225 333 303 4 chrX 37627996 37628230 -139345910 + L2 LINE L2 2934 3237 -35 864 192 111 15 chrX 37628354 37628552 -139345588 + MER20 DNA MER1_type 3 219 0 852 176 74 6 chrX 37628585 37628761 -139345379 + MER5A DNA MER1_type 1 188 -1 367 292 0 18 chrX 37629876 37629989 -139344151 - MIR SINE MIR -120 142 32 293 319 3 12 chrX 37630427 37630520 -139343620 + MIR SINE MIR 29 118 -90 422 288 158 54 chrX 37630523 37630614 -139343526 + MIR SINE MIR 2 82 -180 1006 179 0 17 chrX 37630614 37630793 -139343347 + MER45A DNA AcHobo 1 176 -2 422 288 158 54 chrX 37630793 37630923 -139343217 + MIR SINE MIR 82 246 -16 296 280 0 13 chrX 37630934 37631009 -139343131 + MIR3 SINE MIR 107 180 -28 811 187 17 62 chrX 37632096 37632385 -139341755 - L1MA8 LINE L1 -6 6285 6010 2171 107 47 0 chrX 37633637 37633935 -139340205 + AluSx SINE Alu 1 312 0 543 302 39 17 chrX 37634240 37634419 -139339721 - MIR SINE MIR 0 262 80 2263 100 10 0 chrX 37634755 37635055 -139339085 + AluY SINE Alu 1 303 -8 8016 29 3 0 chrX 37635055 37636059 -139338081 - L1PA3 LINE L1 -1817 4329 3323 8968 35 0 0 chrX 37636059 37637936 -139336204 + L1PA3 LINE L1 4302 6178 0 396 0 0 0 chrX 37638077 37638121 -139336019 + (TG)n Simple_repeat Simple_repeat 1 44 0 2240 133 54 3 chrX 37638663 37639031 -139335109 - MSTC LTR MaLR 0 428 42 1865 138 92 14 chrX 37639074 37639422 -139334718 + THE1C LTR MaLR 1 375 0 660 284 147 21 chrX 37639447 37639732 -139334408 - L2 LINE L2 -6 3307 2987 * 1249 265 46 33 chrX 37639729 37639999 -139334141 + L2 LINE L2 2916 3194 -119 1045 210 33 9 chrX 37639999 37640026 -139334114 + MER58A DNA MER1_type 5 30 -2390 2169 141 0 0 chrX 37640026 37640332 -139333808 - AluSx SINE Alu -6 306 1 1045 210 33 9 chrX 37640332 37640518 -139333622 + MER58A DNA MER1_type 30 223 -1 1249 265 46 33 chrX 37640518 37640640 -139333500 + L2 LINE L2 3194 3313 0 666 280 42 17 chrX 37640975 37641214 -139332926 + MIR SINE MIR 15 259 -3 496 252 52 19 chrX 37641287 37641442 -139332698 + MER77 LTR ERV1 53 212 -393 1269 242 75 35 chrX 37641521 37641954 -139332186 + MER77 LTR ERV1 175 599 -6 3656 74 9 17 chrX 37642338 37642624 -139331516 - L1PA8A LINE L1 -365 5766 5479 2327 85 0 0 chrX 37642624 37642952 -139331188 - AluSq SINE Alu 0 328 1 3656 74 9 17 chrX 37642952 37643382 -139330758 - L1PA8A LINE L1 -652 5479 5058 2713 84 38 5 chrX 37643383 37643775 -139330365 + L1PA8 LINE L1 5768 6172 0 327 224 0 26 chrX 37643990 37644066 -139330074 - L2 LINE L2 -2 3270 3197 2293 100 42 31 chrX 37646909 37647269 -139326871 - THE1B LTR MaLR 0 364 1 2261 103 0 20 chrX 37651077 37651378 -139322762 + AluSg SINE Alu 1 295 -15 294 209 17 3 chrX 37654808 37654903 -139319237 + L1ME LINE L1 62 157 -5913 329 296 19 19 chrX 37655042 37655150 -139318990 + L1ME LINE L1 383 490 -5580 393 278 70 61 chrX 37655163 37655393 -139318747 + L1ME LINE L1 405 636 -5434 277 250 0 0 chrX 37655389 37655469 -139318671 + L1MA9 LINE L1 6195 6274 -38 * 2150 229 137 47 chrX 37655549 37655792 -139318348 + L1ME LINE L1 651 871 -5209 2052 100 4 4 chrX 37655792 37656063 -139318077 + AluSg SINE Alu 3 273 -37 188 33 0 33 chrX 37656069 37656099 -139318041 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2150 229 137 47 chrX 37656099 37656932 -139317208 + L1ME LINE L1 875 1831 -4249 290 196 0 0 chrX 37656931 37656982 -139317158 + L1MEc LINE L1 35 85 -6311 * 1649 253 68 0 chrX 37656987 37657500 -139316640 + L1MEc LINE L1 2562 3109 -3106 1183 123 5 0 chrX 37657521 37657725 -139316415 + L1MA8 LINE L1 6083 6287 -4 2635 39 0 16 chrX 37657735 37658047 -139316093 + AluY SINE Alu 1 307 -4 317 256 0 0 chrX 37658073 37658163 -139315977 + L1MEc LINE L1 3097 3186 -3029 * 3211 249 66 19 chrX 37658159 37659598 -139314542 + L1ME LINE L1 1858 3324 -2756 913 239 90 4 chrX 37659655 37659910 -139314230 - LTR16A LTR ERVL -172 278 2 2055 108 3 7 chrX 37660017 37660340 -139313800 + AluSx SINE Alu 3 324 0 22 0 0 0 chrX 37660340 37660362 -139313778 + AT_rich Low_complexity Low_complexity 1 22 0 268 235 106 12 chrX 37660383 37660468 -139313672 - L2 LINE L2 -16 3297 3205 2257 209 68 8 chrX 37663904 37664435 -139309705 - MER21B LTR ERV1 -11 852 290 2270 120 0 0 chrX 37664526 37664826 -139309314 - AluSx SINE Alu -12 300 1 4840 99 12 0 chrX 37664865 37665549 -139308591 - L1PA15 LINE L1 -4 6161 5470 256 123 56 78 chrX 37665569 37665748 -139308392 + (TTATA)n Simple_repeat Simple_repeat 2 176 0 * 433 154 33 55 chrX 37665628 37665810 -139308330 + (TTAA)n Simple_repeat Simple_repeat 2 179 0 312 222 17 33 chrX 37665822 37666002 -139308138 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 363 193 29 35 chrX 37665887 37666058 -139308082 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 * 375 186 0 82 chrX 37665981 37666175 -139307965 + (TAAA)n Simple_repeat Simple_repeat 2 179 0 319 89 81 8 chrX 37666199 37666322 -139307818 + (TATAA)n Simple_repeat Simple_repeat 1 132 0 713 40 0 10 chrX 37666335 37666435 -139307705 - L1PA15 LINE L1 -698 5467 5369 857 182 168 10 chrX 37666441 37666644 -139307496 - MER21B LTR ERV1 -617 246 12 39 50 0 0 chrX 37667389 37667449 -139306691 + AT_rich Low_complexity Low_complexity 1 60 0 457 88 81 6 chrX 37667449 37667609 -139306531 + (TA)n Simple_repeat Simple_repeat 1 172 0 3118 144 31 13 chrX 37667670 37668225 -139305915 - MER34B LTR ERV1 0 565 1 1797 135 40 4 chrX 37669537 37669864 -139304276 + AluJo SINE Alu 1 337 0 7820 16 0 0 chrX 37670384 37671389 -139302751 - L1PA3 LINE L1 0 6155 5150 3962 34 0 0 chrX 37671389 37671888 -139302252 + L1PA3 LINE L1 4646 5144 -1002 2129 69 55 0 chrX 37672639 37672947 -139301193 + AluY SINE Alu 1 323 0 1236 211 49 98 chrX 37673298 37673628 -139300512 + L1MDa LINE L1 2079 2415 -4213 1646 153 108 13 chrX 37673628 37673942 -139300198 - MER2 DNA MER2_type 0 344 1 1236 211 49 98 chrX 37673942 37674233 -139299907 + L1MDa LINE L1 2415 2719 -3909 591 314 11 43 chrX 37674274 37674621 -139299519 + L1MCb LINE L1 27 362 -5683 513 285 50 46 chrX 37674927 37675242 -139298898 - L1MCc LINE L1 -5645 777 465 1653 106 171 33 chrX 37675242 37675517 -139298623 + AluSq SINE Alu 1 313 0 513 285 50 46 chrX 37675517 37675589 -139298551 - L1MCc LINE L1 -5957 465 44 1272 250 26 0 chrX 37675604 37676024 -139298116 - L1MC/D LINE L1 -734 5625 5197 189 376 85 12 chrX 37676141 37676306 -139297834 + L3 LINE CR1 209 385 -1192 2104 136 3 23 chrX 37676451 37676797 -139297343 + MER1B DNA MER1_type 1 339 0 1188 154 81 0 chrX 37676943 37677177 -139296963 - L1MD3 LINE L1 -13 7982 7730 1239 231 95 24 chrX 37677181 37677632 -139296508 - L1MC/D LINE L1 -939 5207 4725 1883 231 45 21 chrX 37677637 37678169 -139295971 + L1MD3 LINE L1 6733 7277 -718 722 172 0 0 chrX 37678170 37678292 -139295848 + MLT1F1 LTR MaLR 1 122 -445 1352 173 20 0 chrX 37678293 37678542 -139295598 + L1MD3 LINE L1 7402 7655 -340 * 3502 216 37 37 chrX 37678535 37678919 -139295221 - L1MC/D LINE L1 -1409 4737 4354 3146 37 3 0 chrX 37678919 37679298 -139294842 - L1PA4 LINE L1 -2 6153 5774 1812 163 0 11 chrX 37679298 37679581 -139294559 - AluSx SINE Alu -32 280 1 3502 216 37 37 chrX 37679581 37680223 -139293917 - L1MC/D LINE L1 -1790 4356 3710 429 188 164 36 chrX 37680236 37680401 -139293739 + L1M4 LINE L1 2445 2630 -3516 * 1868 235 6 19 chrX 37680386 37680900 -139293240 + L1M4 LINE L1 3409 3915 -2231 2481 194 78 63 chrX 37680903 37681709 -139292431 + L1M4 LINE L1 4052 4869 -1277 22 35 0 0 chrX 37682263 37682292 -139291848 + AT_rich Low_complexity Low_complexity 1 29 0 297 229 0 68 chrX 37684368 37684426 -139289714 - L1ME LINE L1 -397 5724 5676 2930 132 2 16 chrX 37684426 37684917 -139289223 - MER31A LTR ERV1 -1 484 1 297 229 0 68 chrX 37684917 37684976 -139289164 - L1ME LINE L1 -445 5676 5615 2138 132 0 0 chrX 37684977 37685272 -139288868 - AluJo SINE Alu -17 295 1 1582 219 75 29 chrX 37688026 37688543 -139285597 - L1MC4 LINE L1 0 8042 7502 419 291 137 0 chrX 37688570 37688687 -139285453 - L2 LINE L2 -18 3254 3122 360 195 12 24 chrX 37689619 37689701 -139284439 + MER94 DNA DNA 8 88 -46 721 294 99 5 chrX 37690356 37690761 -139283379 - L1M4 LINE L1 -1664 4482 4040 764 162 76 0 chrX 37690796 37690948 -139283192 + MER46A DNA MER2_type 2 176 -60 1342 241 156 19 chrX 37691003 37691980 -139282160 - L1M4 LINE L1 -2172 3974 2823 336 272 11 11 chrX 37691994 37692086 -139282054 + L1M4 LINE L1 2215 2306 -3840 274 257 100 7 chrX 37692092 37692232 -139281908 + L1M4 LINE L1 2350 2502 -3644 322 241 61 81 chrX 37694439 37694700 -139279440 + L1ME4a LINE L1 5855 6110 -11 209 194 71 31 chrX 37694726 37694824 -139279316 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 627 151 119 0 chrX 37694826 37694952 -139279188 + MIR SINE MIR 112 252 -10 306 0 0 0 chrX 37695322 37695356 -139278784 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 527 283 128 53 chrX 37695373 37695747 -139278393 - LTR67 LTR ERVL -7 550 149 587 137 0 11 chrX 37695795 37695890 -139278250 - AluYb8 SINE Alu -11 307 214 936 194 0 6 chrX 37696115 37696275 -139277865 + FRAM SINE Alu 1 159 -7 2149 123 13 0 chrX 37696738 37697039 -139277101 - AluSx SINE Alu -7 305 1 1990 218 92 23 chrX 37697522 37697961 -139276179 - MER68 LTR ERV1 -4 558 76 2515 204 105 11 chrX 37697961 37698533 -139275607 - MLT1E2 LTR MaLR 0 626 1 1990 218 92 23 chrX 37698533 37698615 -139275525 - MER68 LTR ERV1 -486 76 1 206 233 33 0 chrX 37698912 37698972 -139275168 + MIR SINE MIR 74 135 -127 197 191 34 79 chrX 37699067 37699156 -139274984 - L2 LINE L2 -50 3263 3179 555 21 65 0 chrX 37699715 37699808 -139274332 + CT-rich Low_complexity Low_complexity 2 100 0 191 323 54 39 chrX 37700679 37700809 -139273331 + MIR SINE MIR 56 187 -75 324 282 123 36 chrX 37701404 37701624 -139272516 + MIR SINE MIR 13 251 -11 979 185 72 26 chrX 37701988 37702183 -139271957 + MER63A DNA MER1_type 1 204 -6 186 43 0 0 chrX 37702210 37702233 -139271907 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2125 150 19 14 chrX 37703935 37704295 -139269845 - MLT1A1 LTR MaLR 0 365 4 1170 185 26 9 chrX 37704737 37704964 -139269176 - MSTB2 LTR MaLR -226 231 1 376 232 35 78 chrX 37705098 37705240 -139268900 - LTR67 LTR ERVL 0 557 422 5432 124 40 9 chrX 37706265 37707239 -139266901 + L1MB1 LINE L1 5160 6168 0 28 0 0 0 chrX 37707340 37707368 -139266772 + AT_rich Low_complexity Low_complexity 1 28 0 1900 174 36 77 chrX 37708790 37709284 -139264856 - HsTC2 DNA Tc2 0 1900 1251 706 229 7 0 chrX 37709260 37709413 -139264727 - HsTC2 DNA Tc2 -1385 513 360 * 1094 227 25 73 chrX 37709540 37709925 -139264215 - L1MD2 LINE L1 -17 6342 5970 3757 316 35 6 chrX 37709964 37711226 -139262914 - HERV16 LTR ERVL -3432 1564 266 1736 240 61 22 chrX 37711470 37711915 -139262225 - LTR16B LTR ERVL -2 462 1 279 79 0 0 chrX 37711991 37712029 -139262111 + (TC)n Simple_repeat Simple_repeat 1 38 0 1936 133 4 0 chrX 37712029 37712307 -139261833 - AluJb SINE Alu -22 290 12 2004 184 112 2 chrX 37713238 37713657 -139260483 + MLT1C LTR MaLR 1 465 -2 816 81 0 0 chrX 37713856 37713955 -139260185 - AluS SINE Alu -213 99 1 188 83 0 28 chrX 37713968 37714004 -139260136 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5337 32 1 18 chrX 37714004 37714689 -139259451 - L1PA4 LINE L1 -24 6131 5462 648 288 86 21 chrX 37714730 37714973 -139259167 - MIR SINE MIR -2 260 2 2477 203 65 25 chrX 37716382 37716940 -139257200 - L1ME1 LINE L1 -5 6161 5582 203 175 0 0 chrX 37718449 37718489 -139255651 + (TAA)n Simple_repeat Simple_repeat 3 42 0 305 306 88 38 chrX 37719218 37719506 -139254634 + L2 LINE L2 2775 3081 -191 284 296 114 0 chrX 37719761 37719893 -139254247 - L2 LINE L2 -2606 708 562 884 182 19 0 chrX 37720015 37720169 -139253971 + FRAM SINE Alu 1 156 -20 198 150 0 0 chrX 37720392 37720432 -139253708 + (CTA)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chrX 37720995 37721021 -139253119 + AT_rich Low_complexity Low_complexity 1 26 0 1307 188 110 55 chrX 37721327 37721673 -139252467 + MLT1A1 LTR MaLR 1 365 0 1934 167 229 15 chrX 37721946 37722401 -139251739 - L1MD2 LINE L1 -78 6281 5730 1166 97 32 75 chrX 37722403 37722589 -139251551 - FRAM SINE Alu -5 171 1 9778 176 108 45 chrX 37722604 37723041 -139251099 - L1MDa LINE L1 -4007 2533 2125 2108 130 23 0 chrX 37723041 37723340 -139250800 - AluSx SINE Alu -6 306 1 9778 176 108 45 chrX 37723340 37723998 -139250142 - L1MDa LINE L1 -4415 2125 1510 1796 129 56 31 chrX 37723998 37724284 -139249856 + AluSx SINE Alu 1 293 -19 9778 176 108 45 chrX 37724284 37725565 -139248575 - L1MDa LINE L1 -5030 1510 5 1595 241 121 71 chrX 37725583 37726313 -139247827 - L1MC5 LINE L1 -46 7915 7223 1081 164 26 62 chrX 37726313 37726539 -139247601 + MER20 DNA MER1_type 2 219 0 1595 241 121 71 chrX 37726539 37728036 -139246104 - L1MC5 LINE L1 -738 7223 5543 572 168 168 7 chrX 37729186 37729329 -139244811 + MIR SINE MIR 97 262 0 479 316 0 68 chrX 37729357 37729623 -139244517 + L2 LINE L2 2701 2948 -366 525 206 19 0 chrX 37729838 37729945 -139244195 + MIR SINE MIR 90 198 -64 246 250 11 23 chrX 37730016 37730104 -139244036 + L1M LINE L1 5318 5404 -766 217 284 253 0 chrX 37730122 37730217 -139243923 - L2 LINE L2 0 3313 3195 362 317 85 20 chrX 37730327 37730526 -139243614 - L2 LINE L2 -353 2961 2750 225 258 16 129 chrX 37730530 37730610 -139243530 - MLT1J LTR MaLR -2 509 446 363 228 78 106 chrX 37730610 37730790 -139243350 - MER104 DNA MER2_type -4 176 2 225 258 16 129 chrX 37730790 37730833 -139243307 - MLT1J LTR MaLR -65 446 400 307 248 9 28 chrX 37730938 37731047 -139243093 - L1MC5 LINE L1 -1479 4667 4561 1878 124 2 146 chrX 37731092 37731231 -139242909 - MER2 DNA MER2_type 0 345 188 1803 104 58 84 chrX 37731231 37731577 -139242563 + MER1B DNA MER1_type 1 337 0 1878 124 2 146 chrX 37731577 37731840 -139242300 - MER2 DNA MER2_type -157 188 1 24 32 0 0 chrX 37732016 37732047 -139242093 + AT_rich Low_complexity Low_complexity 1 31 0 975 194 36 60 chrX 37732091 37732343 -139241797 + Charlie2 DNA MER1_type 76 321 -2541 3525 216 50 17 chrX 37732373 37733303 -139240837 + Charlie2 DNA MER1_type 1876 2835 -27 240 261 43 0 chrX 37733803 37733872 -139240268 + L2 LINE L2 3239 3310 -3 180 0 0 0 chrX 37734094 37734114 -139240026 + (CAG)n Simple_repeat Simple_repeat 2 21 0 455 283 11 44 chrX 37735495 37735675 -139238465 + MER5A DNA MER1_type 16 189 0 294 236 0 0 chrX 37735922 37736045 -139238095 + G-rich Low_complexity Low_complexity 5 127 0 249 228 0 0 chrX 37736322 37736401 -139237739 + (CCCCAG)n Simple_repeat Simple_repeat 1 79 0 249 33 0 0 chrX 37738767 37738797 -139235343 + (A)n Simple_repeat Simple_repeat 1 30 0 425 256 45 34 chrX 37738797 37738973 -139235167 + MIR SINE MIR 79 256 -6 254 280 48 56 chrX 37739766 37739891 -139234249 + L2 LINE L2 3190 3313 0 1547 229 76 39 chrX 37740206 37740741 -139233399 - L1MC3 LINE L1 0 8042 7505 2430 81 0 19 chrX 37741463 37741773 -139232367 - AluSx SINE Alu -8 304 1 658 148 82 15 chrX 37742351 37742486 -139231654 - L1ME3A LINE L1 0 6170 6027 455 238 8 16 chrX 37742497 37742623 -139231517 - L1ME3A LINE L1 -194 5976 5852 432 94 62 0 chrX 37742640 37742704 -139231436 - MER51D LTR ERV1 -90 567 500 788 145 61 0 chrX 37742805 37742936 -139231204 - FRAM SINE Alu 0 40 1 1130 141 0 47 chrX 37743185 37743377 -139230763 - MER5A DNA MER1_type -6 183 1 474 306 57 89 chrX 37743847 37744183 -139229957 + L1MEd LINE L1 12 336 -5783 226 261 80 11 chrX 37744263 37744351 -139229789 + L1MEd LINE L1 465 558 -5561 254 111 0 0 chrX 37744892 37744937 -139229203 + L1MA4A LINE L1 6259 6303 0 388 332 60 68 chrX 37745075 37745458 -139228682 + L1MEd LINE L1 88 467 -5738 515 390 19 24 chrX 37745589 37746002 -139228138 + L1MEd LINE L1 539 949 -5256 615 298 139 19 chrX 37746238 37746711 -139227429 + L1MEd LINE L1 1288 1817 -4579 531 253 74 7 chrX 37747089 37747358 -139226782 + L1MEd LINE L1 2952 3238 -2977 1729 128 32 32 chrX 37747365 37747647 -139226493 + AluSx SINE Alu 30 311 -1 303 264 139 31 chrX 37747657 37747786 -139226354 + L1MEd LINE L1 3224 3366 -2849 2372 107 3 0 chrX 37747793 37748102 -139226038 + AluSx SINE Alu 1 310 -2 288 0 0 0 chrX 37748102 37748134 -139226006 + (TA)n Simple_repeat Simple_repeat 2 33 0 571 259 57 20 chrX 37748272 37748519 -139225621 + L1MEd LINE L1 3656 3911 -2304 377 322 27 0 chrX 37748529 37748675 -139225465 + HAL1 LINE L1 2 151 -2356 1252 276 35 51 chrX 37748709 37749282 -139224858 + L1MCb LINE L1 3 566 -5479 422 208 0 10 chrX 37749374 37749475 -139224665 + L1MCb LINE L1 571 670 -5375 2010 152 3 0 chrX 37749614 37749903 -139224237 - AluJo SINE Alu -22 290 1 1411 161 144 29 chrX 37750675 37751092 -139223048 + Charlie1b DNA MER1_type 12 476 -47 2356 232 78 2 chrX 37751093 37751735 -139222405 - L1ME1 LINE L1 -3 6163 5473 565 101 20 10 chrX 37751735 37751834 -139222306 + (TTTC)n Simple_repeat Simple_repeat 2 101 0 1975 124 35 0 chrX 37751838 37752019 -139222121 - AluSx SINE Alu 0 312 116 213 65 0 0 chrX 37752019 37752050 -139222090 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1975 124 35 0 chrX 37752050 37752150 -139221990 - AluSx SINE Alu -196 116 21 2994 227 20 30 chrX 37752158 37752269 -139221871 - L1ME1 LINE L1 -673 5493 5382 1834 188 0 6 chrX 37752269 37752583 -139221557 - AluJb SINE Alu 0 312 1 2994 227 20 30 chrX 37752583 37753334 -139220806 - L1ME1 LINE L1 -784 5382 4625 1836 117 62 91 chrX 37753334 37753720 -139220420 + THE1C LTR MaLR 1 375 0 6052 160 106 48 chrX 37753720 37755214 -139218926 + THE1C-int LTR MaLR 1 1580 0 1664 143 49 83 chrX 37755216 37755602 -139218538 + THE1C LTR MaLR 3 375 0 2994 227 20 30 chrX 37755602 37755791 -139218349 - L1ME1 LINE L1 -1541 4625 4448 974 232 75 15 chrX 37756385 37756652 -139217488 + L1MEc LINE L1 20 302 -6094 719 182 176 0 chrX 37756657 37756752 -139217388 + L1MA9 LINE L1 6048 6125 -187 234 0 0 0 chrX 37756752 37756778 -139217362 + (CA)n Simple_repeat Simple_repeat 2 27 0 719 182 176 0 chrX 37756778 37756858 -139217282 + L1MA9 LINE L1 6125 6254 -58 236 212 24 47 chrX 37756927 37756979 -139217161 + A-rich Low_complexity Low_complexity 2 53 -31 448 116 0 0 chrX 37756979 37757048 -139217092 + L1MA9 LINE L1 6239 6307 -5 236 212 24 47 chrX 37757048 37757080 -139217060 + A-rich Low_complexity Low_complexity 53 84 0 472 287 27 0 chrX 37757146 37757369 -139216771 + L1MEc LINE L1 378 656 -5740 2961 158 52 32 chrX 37757369 37758046 -139216094 - MER67C LTR ERV1 0 710 21 2802 245 60 35 chrX 37758059 37759212 -139214928 + L1MEc LINE L1 653 1834 -4562 2243 68 51 3 chrX 37759253 37759545 -139214595 - AluSg SINE Alu -4 306 1 6831 236 39 35 chrX 37759866 37759994 -139214146 + L1M4 LINE L1 2900 3026 -3120 5338 45 0 5 chrX 37759994 37760644 -139213496 - L1PA6 LINE L1 -2 6152 5506 6831 236 39 35 chrX 37760644 37762611 -139211529 + L1M4 LINE L1 3026 5010 -1136 2308 93 3 16 chrX 37762611 37762947 -139211193 + AluSp SINE Alu 1 313 0 6831 236 39 35 chrX 37762947 37763259 -139210881 + L1M4 LINE L1 5010 5319 -827 258 116 0 0 chrX 37763323 37763366 -139210774 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 460 258 131 25 chrX 37763427 37763787 -139210353 + L1M4 LINE L1 3633 4030 -2116 409 286 95 16 chrX 37763790 37764094 -139210046 + L1M4 LINE L1 4102 4429 -1717 1890 234 56 30 chrX 37764172 37764944 -139209196 - L2 LINE L2 -5 3308 2502 977 137 86 15 chrX 37764945 37765142 -139208998 + MER2 DNA MER2_type 1 211 -134 1331 261 18 9 chrX 37765228 37765554 -139208586 - L2 LINE L2 -858 2456 2128 2267 236 282 96 chrX 37765927 37766194 -139207946 + L2 LINE L2 8 224 -3090 283 283 115 0 chrX 37766194 37766307 -139207833 - MER94 DNA DNA -7 127 2 2267 236 282 96 chrX 37766307 37767464 -139206676 + L2 LINE L2 224 1829 -1485 1334 204 36 4 chrX 37767464 37767935 -139206205 - L1MD2 LINE L1 -10 6349 5815 251 200 0 0 chrX 37768804 37768859 -139205281 - L1MD2 LINE L1 -2419 5623 5569 1707 111 4 4 chrX 37768863 37769098 -139205042 + AluSg/x SINE Alu 76 310 -2 3393 246 99 29 chrX 37769121 37770465 -139203675 - L2 LINE L2 -67 3246 1823 715 193 78 6 chrX 37770466 37770632 -139203508 + L1MDa LINE L1 9 186 -6354 2549 207 67 41 chrX 37770633 37771494 -139202646 + L1MDa LINE L1 660 1687 -4853 201 208 0 83 chrX 37771503 37771551 -139202589 + L2 LINE L2 3252 3295 -18 27 0 0 0 chrX 37771638 37771665 -139202475 + AT_rich Low_complexity Low_complexity 1 27 0 540 226 0 90 chrX 37771883 37772060 -139202080 - L2 LINE L2 -437 2877 2717 267 317 25 56 chrX 37772606 37772767 -139201373 + MIR SINE MIR 55 210 -52 1034 224 110 0 chrX 37772860 37773150 -139200990 + MER5C DNA MER1_type 3 324 0 2230 107 0 10 chrX 37773441 37773739 -139200401 - AluSx SINE Alu -17 295 1 995 251 77 40 chrX 37773932 37773952 -139200188 - L1MC4a LINE L1 -1961 5847 5829 1793 193 7 0 chrX 37773952 37774252 -139199888 - AluJo SINE Alu -10 302 1 995 251 77 40 chrX 37774252 37774578 -139199562 - L1MC4a LINE L1 -1979 5829 5516 243 88 0 0 chrX 37774578 37774612 -139199528 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1959 134 0 0 chrX 37774618 37774893 -139199247 - AluSx SINE Alu -37 275 1 995 251 77 40 chrX 37774893 37775008 -139199132 - L1MC4a LINE L1 -2296 5512 5361 265 236 0 18 chrX 37775211 37775266 -139198874 + L2 LINE L2 3202 3255 -17 630 215 230 20 chrX 37775958 37776158 -139197982 - MIR SINE MIR 0 262 21 2190 86 18 0 chrX 37776609 37776888 -139197252 - AluSq SINE Alu -29 284 1 253 352 72 53 chrX 37777027 37777291 -139196849 + L2 LINE L2 2696 2964 -350 3600 149 52 2 chrX 37777412 37778049 -139196091 + LTR65 LTR ERV1 1 669 0 390 255 0 41 chrX 37778151 37778249 -139195891 + MIR SINE MIR 50 143 -65 363 295 108 8 chrX 37778271 37778400 -139195740 + MIR SINE MIR 21 162 -100 586 228 74 12 chrX 37778484 37778646 -139195494 + MIR SINE MIR 73 244 -18 2063 58 48 65 chrX 37780572 37780881 -139193259 - AluSx SINE Alu -8 304 1 233 239 149 37 chrX 37781024 37781158 -139192982 - L1ME4a LINE L1 -8 6113 5965 604 294 218 18 chrX 37783081 37783516 -139190624 - L2 LINE L2 -470 2844 2323 629 219 56 124 chrX 37783953 37784070 -139190070 + MIR SINE MIR 46 141 -121 4246 110 14 1 chrX 37784070 37784723 -139189417 + L1MA4 LINE L1 5629 6289 -11 629 219 56 124 chrX 37784723 37784838 -139189302 + MIR SINE MIR 141 262 0 402 263 144 38 chrX 37785029 37785070 -139189070 - MIR3 SINE MIR -14 194 159 2455 50 0 0 chrX 37785070 37785367 -139188773 + AluY SINE Alu 1 297 -14 402 263 144 38 chrX 37785367 37785485 -139188655 - MIR3 SINE MIR -49 159 18 389 325 16 24 chrX 37785829 37785952 -139188188 - L2 LINE L2 -1 3271 3150 307 270 90 11 chrX 37786073 37786162 -139187978 - MER5B DNA MER1_type -23 155 60 897 261 161 40 chrX 37786456 37786978 -139187162 + L1ME4a LINE L1 5291 5875 -246 1248 199 21 8 chrX 37787033 37787269 -139186871 + MER8 DNA MER2_type 1 239 0 572 265 41 7 chrX 37787272 37787414 -139186726 + MIR SINE MIR 18 164 -98 718 203 55 6 chrX 37787414 37787577 -139186563 + MER5B DNA MER1_type 2 172 -6 253 211 224 0 chrX 37787597 37787673 -139186467 + MIR SINE MIR 170 262 0 307 210 120 0 chrX 37787929 37788029 -139186111 + L1ME4a LINE L1 5711 5822 -299 1583 135 22 94 chrX 37788034 37788353 -139185787 + AluJo SINE Alu 1 296 -16 1772 164 0 0 chrX 37788366 37788640 -139185500 - AluJb SINE Alu -36 276 3 317 216 58 14 chrX 37788736 37788875 -139185265 + L1ME4a LINE L1 5976 6120 -1 33 25 0 0 chrX 37789653 37789693 -139184447 + AT_rich Low_complexity Low_complexity 1 40 0 237 320 150 10 chrX 37789870 37789970 -139184170 + MIR SINE MIR 22 135 -127 918 150 47 52 chrX 37789971 37790184 -139183956 + MIR SINE MIR 16 227 -35 472 246 53 86 chrX 37790339 37790526 -139183614 - MIR3 SINE MIR -25 183 3 237 242 21 95 chrX 37791799 37791894 -139182246 - L2 LINE L2 -3 3310 3223 229 290 29 0 chrX 37992133 37992202 -138981938 + CT-rich Low_complexity Low_complexity 3 73 0 208 325 17 103 chrX 37993863 37993980 -138980160 + L2 LINE L2 3164 3270 -2 189 0 0 0 chrX 37994112 37994133 -138980007 + (CTTTG)n Simple_repeat Simple_repeat 2 22 0 180 231 11 165 chrX 37994272 37994363 -138979777 - L2 LINE L2 -24 3248 3172 670 242 13 7 chrX 37994505 37994654 -138979486 - MIR SINE MIR -86 176 27 253 306 64 19 chrX 37995338 37995472 -138978668 + MIR SINE MIR 4 146 -62 515 328 62 31 chrX 37996033 37996390 -138977750 + L2 LINE L2 1635 2002 -1312 5890 124 38 1 chrX 37996439 37997408 -138976732 + L1MA4 LINE L1 5296 6300 0 2183 116 3 0 chrX 37997418 37997712 -138976428 - AluSx SINE Alu -17 295 1 382 348 185 15 chrX 37997722 37998133 -138976007 + L2 LINE L2 2018 2498 -816 240 278 133 0 chrX 37998453 37998543 -138975597 + MIR SINE MIR 148 249 -13 280 315 8 55 chrX 37999483 37999610 -138974530 + L2 LINE L2 2562 2682 -632 2291 104 0 0 chrX 38000023 38000312 -138973828 - AluSx SINE Alu -23 289 1 306 266 93 63 chrX 38000543 38000780 -138973360 + L1 LINE L1 3150 3393 -2753 261 277 69 8 chrX 38001040 38001170 -138972970 + L1 LINE L1 3635 3772 -2374 600 164 79 0 chrX 38001193 38001345 -138972795 - LTR37A LTR ERV1 0 426 263 207 362 27 27 chrX 38001618 38001767 -138972373 + L2 LINE L2 470 618 -2696 1072 118 43 5 chrX 38001776 38001963 -138972177 - L1MA5A LINE L1 -2 6295 6102 313 304 109 0 chrX 38002203 38002295 -138971845 - L2 LINE L2 -24 3248 3147 292 213 107 0 chrX 38002302 38002377 -138971763 - MER58B DNA MER1_type -15 326 244 2306 96 54 0 chrX 38002377 38002730 -138971410 - L1MA5A LINE L1 -257 6040 5669 200 188 0 0 chrX 38002730 38002762 -138971378 + (CATA)n Simple_repeat Simple_repeat 3 34 0 857 180 133 0 chrX 38002762 38002973 -138971167 + MER58B DNA MER1_type 88 326 -15 313 304 109 0 chrX 38002981 38003073 -138971067 + L2 LINE L2 3147 3248 -24 24 0 0 0 chrX 38003557 38003581 -138970559 + AT_rich Low_complexity Low_complexity 1 24 0 846 216 4 122 chrX 38003581 38003835 -138970305 + MER58A DNA MER1_type 1 224 0 402 284 26 26 chrX 38004086 38004202 -138969938 - L2 LINE L2 -1 3271 3156 355 298 36 42 chrX 38004191 38004359 -138969781 + MIR SINE MIR 34 200 -62 * 21 36 0 0 chrX 38004378 38004406 -138969734 + AT_rich Low_complexity Low_complexity 1 28 0 359 217 87 70 chrX 38004410 38004525 -138969615 - L2 LINE L2 -6 3307 3191 2224 55 0 28 chrX 38004662 38004976 -138969164 + AluY SINE Alu 1 306 0 484 319 37 16 chrX 38005202 38005390 -138968750 - MIR3 SINE MIR -1 207 16 218 335 65 49 chrX 38006195 38006440 -138967700 + L2 LINE L2 1540 1788 -1526 1881 210 59 16 chrX 38006477 38006920 -138967220 - MLT1C LTR MaLR 0 467 6 659 319 136 53 chrX 38006925 38007761 -138966379 + L2 LINE L2 1954 2928 -344 3322 55 18 35 chrX 38007761 38008213 -138965927 - MLT2A1 LTR ERVL 0 444 1 659 319 136 53 chrX 38008213 38008590 -138965550 + L2 LINE L2 2928 3272 0 190 217 0 22 chrX 38008703 38008749 -138965391 - L2 LINE L2 -829 2485 2441 223 353 0 0 chrX 38008791 38008859 -138965281 - MIR SINE MIR -1 261 194 483 332 37 21 chrX 38008873 38009114 -138965026 - L2 LINE L2 -946 2368 2124 1778 286 55 65 chrX 38009148 38010308 -138963832 - L2 LINE L2 0 3313 2170 1031 215 6 57 chrX 38010308 38010624 -138963516 + L1MC4 LINE L1 7743 8042 0 1554 222 114 134 chrX 38010744 38011199 -138962941 - L2 LINE L2 -1141 2173 1743 1550 106 13 0 chrX 38011199 38011435 -138962705 + L1MA4 LINE L1 6056 6294 -6 1554 222 114 134 chrX 38011435 38011880 -138962260 - L2 LINE L2 -1571 1743 1291 430 348 36 36 chrX 38011880 38012101 -138962039 - L2 LINE L2 -1285 2029 1809 183 323 113 0 chrX 38012154 38012216 -138961924 + L2 LINE L2 3137 3205 -67 250 291 64 18 chrX 38013179 38013289 -138960851 + L2 LINE L2 3199 3313 0 215 353 41 33 chrX 38014349 38014471 -138959669 + L3b LINE CR1 1106 1228 -355 293 323 108 48 chrX 38014848 38015015 -138959125 + L3b LINE CR1 1272 1448 -135 492 291 71 95 chrX 38015229 38015649 -138958491 + L2 LINE L2 2150 2559 -755 1382 68 4 112 chrX 38015650 38015901 -138958239 - L1PA13 LINE L1 -11 6152 5929 372 344 151 19 chrX 38015914 38016173 -138957967 + L2 LINE L2 2894 3186 -86 2686 225 52 41 chrX 38016251 38017244 -138956896 - L1M4 LINE L1 -999 5541 4538 * 5945 167 43 15 chrX 38017220 38018581 -138955559 - L1MDa LINE L1 -3772 2768 1366 15749 106 17 31 chrX 38018585 38020046 -138954094 + Tigger1 DNA MER2_type 1 1481 -937 6744 56 0 0 chrX 38020046 38020887 -138953253 + L1PA7 LINE L1 5314 6154 0 15749 106 17 31 chrX 38020887 38021396 -138952744 + Tigger1 DNA MER2_type 1481 1933 -485 1760 139 19 4 chrX 38021396 38021663 -138952477 + AluJb SINE Alu 1 271 -41 15749 106 17 31 chrX 38021663 38022143 -138951997 + Tigger1 DNA MER2_type 1933 2418 0 4960 191 103 11 chrX 38022144 38023265 -138950875 - L1MDa LINE L1 -5178 1362 139 397 183 59 0 chrX 38023301 38023403 -138950737 - L1M LINE L1 -844 5302 5213 618 160 38 0 chrX 38023428 38023534 -138950606 - L1MDa LINE L1 -6415 125 16 34 24 0 0 chrX 38023591 38023632 -138950508 + AT_rich Low_complexity Low_complexity 1 41 0 358 280 9 37 chrX 38024807 38024914 -138949226 - MIR SINE MIR -133 129 26 438 281 12 47 chrX 38025201 38025372 -138948768 - MIR SINE MIR -21 241 77 347 17 67 0 chrX 38026042 38026102 -138948038 + (TG)n Simple_repeat Simple_repeat 2 65 0 199 208 19 38 chrX 38027035 38027088 -138947052 - L2 LINE L2 -1 3312 3261 183 241 35 52 chrX 38027433 38027491 -138946649 - L2 LINE L2 -541 2773 2717 215 249 171 69 chrX 38027959 38028176 -138945964 + L2 LINE L2 1686 1924 -1390 427 238 232 0 chrX 38028261 38028412 -138945728 + MIR SINE MIR 71 256 -6 2214 106 0 7 chrX 38028484 38028777 -138945363 - AluSg SINE Alu -18 292 2 557 249 158 18 chrX 38028867 38029032 -138945108 - MER5A DNA MER1_type 0 189 2 325 281 85 55 chrX 38029042 38029241 -138944899 + L2 LINE L2 2160 2364 -950 1884 120 74 0 chrX 38029499 38029782 -138944358 + AluSx SINE Alu 1 304 -8 455 292 77 44 chrX 38029807 38030081 -138944059 + L1MC4a LINE L1 5114 5396 -750 1616 179 7 11 chrX 38030085 38030364 -138943776 + AluJo SINE Alu 6 283 -29 658 99 36 0 chrX 38030372 38030483 -138943657 + GA-rich Low_complexity Low_complexity 3 117 0 270 263 53 59 chrX 38030485 38030637 -138943503 + L1MC4a LINE L1 5386 5536 -2272 545 149 113 13 chrX 38030638 38030752 -138943388 + MER5A DNA MER1_type 9 116 -62 629 318 82 16 chrX 38030787 38031165 -138942975 + L1MC4a LINE L1 5522 5924 -1884 651 215 76 0 chrX 38031170 38031314 -138942826 - MIR SINE MIR -106 156 2 291 325 146 35 chrX 38032338 38032707 -138941433 - L2 LINE L2 -474 2840 2431 1523 161 14 135 chrX 38032743 38033158 -138940982 - MLT1A1 LTR MaLR 0 365 1 8643 145 21 15 chrX 38033408 38035344 -138938796 + L1MA9 LINE L1 3818 5768 -523 206 94 47 35 chrX 38035418 38035503 -138938637 + (TA)n Simple_repeat Simple_repeat 1 86 0 1040 100 59 0 chrX 38035508 38035678 -138938462 + L1MA9 LINE L1 5783 5962 -329 3498 114 17 17 chrX 38035678 38036209 -138937931 + L1PA16 LINE L1 5625 6157 -9 26 0 0 0 chrX 38036209 38036235 -138937905 + AT_rich Low_complexity Low_complexity 1 26 0 1841 148 45 11 chrX 38036237 38036594 -138937546 + L1MA9 LINE L1 5937 6305 -7 824 161 86 11 chrX 38037021 38037065 -138937075 - MER5A DNA MER1_type -1 188 149 11946 74 14 0 chrX 38037065 38039414 -138934726 + L1PA7 LINE L1 3784 6154 0 824 161 86 11 chrX 38039414 38039543 -138934597 - MER5A DNA MER1_type -40 149 2 195 69 0 0 chrX 38039884 38039913 -138934227 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2148 97 3 33 chrX 38040339 38040638 -138933502 + AluSc SINE Alu 1 290 -19 1063 263 54 48 chrX 38040640 38041157 -138932983 - L1ME4a LINE L1 -3 6118 5599 596 129 11 0 chrX 38041155 38041248 -138932892 - L1MB7 LINE L1 -23 6161 6068 * 556 176 49 0 chrX 38041256 38041358 -138932782 - U6 snRNA snRNA 0 107 1 347 283 127 12 chrX 38041359 38041525 -138932615 - L1ME4a LINE L1 -507 5614 5430 864 301 73 15 chrX 38042716 38043124 -138931016 + L2 LINE L2 2472 2903 -411 450 0 0 0 chrX 38044419 38044469 -138929671 + (CA)n Simple_repeat Simple_repeat 2 51 0 372 254 261 0 chrX 38045765 38045903 -138928237 + MER5A DNA MER1_type 9 182 -7 189 170 21 64 chrX 38046051 38046098 -138928042 - L2 LINE L2 -12 3301 3257 * 367 209 116 0 chrX 38046093 38046179 -138927961 - MIR SINE MIR -67 141 46 374 269 30 16 chrX 38046595 38046746 -138927394 - MIR3 SINE MIR -10 198 45 684 255 35 20 chrX 38048122 38048232 -138925908 + MIR SINE MIR 48 164 -98 1863 151 0 41 chrX 38048232 38048549 -138925591 + AluJo SINE Alu 1 304 -8 684 255 35 20 chrX 38048549 38048638 -138925502 + MIR SINE MIR 164 250 -12 316 327 46 13 chrX 38048666 38048819 -138925321 - MIR SINE MIR -27 235 78 2284 101 3 3 chrX 38049085 38049383 -138924757 + AluSx SINE Alu 1 298 -14 528 291 81 5 chrX 38049520 38049730 -138924410 - MIR SINE MIR -1 261 36 382 255 41 0 chrX 38049863 38049961 -138924179 - L2 LINE L2 -226 3046 2945 711 238 72 5 chrX 38049992 38050185 -138923955 - MIR SINE MIR -34 228 23 196 291 73 0 chrX 38050772 38050827 -138923313 + L2 LINE L2 3189 3247 -25 187 341 68 0 chrX 38051373 38051461 -138922679 + L2 LINE L2 3201 3294 -19 289 251 0 73 chrX 38051535 38051726 -138922414 + CT-rich Low_complexity Low_complexity 1 177 0 410 328 54 39 chrX 38052036 38052240 -138921900 + L2 LINE L2 3063 3269 -3 443 211 119 0 chrX 38052396 38052505 -138921635 - L2 LINE L2 0 3313 3192 244 244 39 13 chrX 38052942 38053020 -138921120 + MIR SINE MIR 34 113 -95 564 261 67 10 chrX 38053030 38053225 -138920915 + L2 LINE L2 1993 2198 -1116 365 256 17 0 chrX 38054027 38054144 -138919996 - MIR SINE MIR -12 250 132 307 281 41 8 chrX 38054164 38054285 -138919855 + MIR SINE MIR 29 153 -109 1323 156 0 0 chrX 38054291 38054502 -138919638 + L1PA16 LINE L1 5956 6166 0 194 225 0 0 chrX 38054533 38054573 -138919567 + L2 LINE L2 3214 3253 -19 218 287 11 144 chrX 38054607 38054711 -138919429 + MIR3 SINE MIR 43 115 -93 797 184 60 38 chrX 38054711 38054896 -138919244 + MER5A DNA MER1_type 1 189 0 218 287 11 144 chrX 38054896 38054972 -138919168 + MIR3 SINE MIR 115 199 -9 24 32 0 0 chrX 38057880 38057911 -138916229 + AT_rich Low_complexity Low_complexity 1 31 0 222 328 35 9 chrX 38058183 38058299 -138915841 + MIR SINE MIR 117 235 -27 845 197 43 107 chrX 38058725 38059025 -138915115 + L1ME2 LINE L1 5874 6154 -10 308 125 18 0 chrX 38059104 38059160 -138914980 - L1M4 LINE L1 -1685 4461 4405 3940 207 60 30 chrX 38059197 38060236 -138913904 - L1M4 LINE L1 -1721 4425 3356 358 185 64 32 chrX 38060284 38060430 -138913710 + L1MC4 LINE L1 7783 8037 -5 549 257 180 14 chrX 38060438 38060660 -138913480 + MIR SINE MIR 3 261 -1 397 212 116 48 chrX 38061269 38061415 -138912725 - MIR SINE MIR -54 208 53 673 297 88 0 chrX 38061422 38061661 -138912479 - MIR SINE MIR -1 261 2 187 194 0 0 chrX 38062165 38062201 -138911939 - L2 LINE L2 -27 3245 3210 277 333 53 0 chrX 38063606 38063720 -138910420 + L2 LINE L2 3181 3300 -13 605 279 88 9 chrX 38063784 38063999 -138910141 - MIR SINE MIR 0 262 31 221 203 0 34 chrX 38064250 38064309 -138909831 - MIR SINE MIR -57 205 149 412 169 39 130 chrX 38064345 38064499 -138909641 - MER5A DNA MER1_type -48 141 2 265 279 0 0 chrX 38064521 38064589 -138909551 - MIR SINE MIR -147 115 48 733 212 36 84 chrX 38064804 38065054 -138909086 + MIR SINE MIR 15 252 -10 916 281 103 48 chrX 38065406 38066133 -138908007 - L1ME4a LINE L1 -28 6093 5327 1081 171 0 11 chrX 38066215 38066391 -138907749 + FRAM SINE Alu 1 171 -5 3137 173 50 8 chrX 38066844 38067447 -138906693 - L1MB8 LINE L1 -37 6141 5514 2295 105 0 0 chrX 38067509 38067805 -138906335 + AluSx SINE Alu 1 296 -16 1136 132 22 0 chrX 38067901 38068083 -138906057 + MER5A DNA MER1_type 2 187 -2 337 245 41 0 chrX 38068699 38068797 -138905343 - MIR SINE MIR -56 206 105 677 246 22 11 chrX 38068826 38069005 -138905135 - MIR SINE MIR -1 261 81 599 281 62 44 chrX 38069318 38069883 -138904257 + L1ME LINE L1 4408 4982 -1164 21 0 0 0 chrX 38070098 38070119 -138904021 + AT_rich Low_complexity Low_complexity 1 21 0 332 296 75 86 chrX 38070152 38070432 -138903708 + L1ME LINE L1 5320 5596 -525 347 293 195 11 chrX 38072124 38072298 -138901842 + MIR SINE MIR 31 236 -26 1696 131 104 0 chrX 38072309 38072569 -138901571 + AluSx SINE Alu 1 287 -25 1314 69 0 0 chrX 38072570 38072744 -138901396 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 280 210 97 153 chrX 38073786 38073910 -138900230 - MIR3 SINE MIR -80 128 12 505 338 6 6 chrX 38074226 38074386 -138899754 + MER5A DNA MER1_type 6 165 -24 250 204 84 108 chrX 38074422 38074589 -138899551 - Charlie7 DNA MER1_type -1 2611 2449 665 283 137 54 chrX 38075365 38075680 -138898460 - L2 LINE L2 0 3272 2932 297 0 0 0 chrX 38075865 38075898 -138898242 + (CA)n Simple_repeat Simple_repeat 2 34 0 2473 276 100 44 chrX 38075940 38077583 -138896557 - L1ME4a LINE L1 -107 6014 4464 1902 151 21 0 chrX 38077583 38077868 -138896272 + AluSx SINE Alu 1 291 -21 2473 276 100 44 chrX 38077868 38079049 -138895091 - L1ME4a LINE L1 -1657 4464 2993 2053 126 0 26 chrX 38079049 38079359 -138894781 - AluSx SINE Alu -10 302 1 2473 276 100 44 chrX 38079359 38079581 -138894559 - L1ME4a LINE L1 -3128 2993 2785 2234 40 0 7 chrX 38079587 38079860 -138894280 + AluY SINE Alu 41 311 0 689 200 135 69 chrX 38080307 38080567 -138893573 - L2 LINE L2 0 3313 3037 288 0 0 0 chrX 38080612 38080644 -138893496 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 0 0 0 chrX 38080643 38080663 -138893477 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 216 143 54 0 chrX 38081239 38081295 -138892845 + (TA)n Simple_repeat Simple_repeat 2 60 0 243 0 0 0 chrX 38081304 38081331 -138892809 + (CA)n Simple_repeat Simple_repeat 2 28 0 1633 175 38 34 chrX 38081724 38082016 -138892124 - AluJb SINE Alu -19 293 1 1182 234 4 0 chrX 38082427 38082654 -138891486 + MIR SINE MIR 27 254 -8 191 59 0 59 chrX 38082655 38082689 -138891451 + (TTA)n Simple_repeat Simple_repeat 1 32 0 243 103 0 0 chrX 38083209 38083248 -138890892 + (CAG)n Simple_repeat Simple_repeat 1 39 0 * 525 121 0 0 chrX 38083246 38083329 -138890811 + (GGA)n Simple_repeat Simple_repeat 3 85 0 731 299 30 17 chrX 38083639 38083870 -138890270 + MIR SINE MIR 28 261 -1 1432 25 0 0 chrX 38084758 38084916 -138889224 + L1PA2 LINE L1 5998 6155 0 591 197 262 6 chrX 38085116 38085299 -138888841 - MIR SINE MIR -10 252 23 625 246 16 27 chrX 38085641 38085824 -138888316 - MIR SINE MIR -3 259 79 605 269 7 0 chrX 38086542 38086683 -138887457 + MIR SINE MIR 2 143 -119 2577 67 0 3 chrX 38088605 38088919 -138885221 + AluSq SINE Alu 1 313 0 207 256 215 33 chrX 38088919 38089030 -138885110 - MIR SINE MIR -86 176 40 1075 225 8 46 chrX 38090412 38090674 -138883466 - MIR SINE MIR -10 252 1 404 290 122 36 chrX 38090779 38091000 -138883140 - MIR SINE MIR 0 262 23 711 296 69 4 chrX 38091433 38091666 -138882474 - MIR SINE MIR 0 262 15 1676 157 61 4 chrX 38091849 38091961 -138882179 + AluSx SINE Alu 1 105 -207 318 26 0 0 chrX 38091961 38092000 -138882140 + (CA)n Simple_repeat Simple_repeat 2 40 0 1676 157 61 4 chrX 38092000 38092167 -138881973 + AluSx SINE Alu 105 296 -16 1949 166 0 0 chrX 38092862 38093170 -138880970 + AluJb SINE Alu 5 312 0 881 279 39 0 chrX 38093170 38093399 -138880741 + MIR SINE MIR 19 256 -6 252 200 0 0 chrX 38093601 38093666 -138880474 + (CA)n Simple_repeat Simple_repeat 2 66 0 22 70 0 0 chrX 38095164 38095207 -138878933 + AT_rich Low_complexity Low_complexity 1 43 0 397 303 91 6 chrX 38098463 38098628 -138875512 + MIR SINE MIR 2 180 -82 250 285 260 8 chrX 38098650 38098773 -138875367 + MER5A DNA MER1_type 36 189 0 4906 177 62 14 chrX 38098896 38098980 -138875160 + L1MB7 LINE L1 4277 4356 -1828 2195 102 0 0 chrX 38098980 38099327 -138874813 + AluY SINE Alu 1 347 0 4906 177 62 14 chrX 38099327 38100244 -138873896 + L1MB7 LINE L1 4356 5228 -956 1830 196 24 47 chrX 38100244 38100447 -138873693 - MLT1A2 LTR MaLR 0 374 183 2307 67 0 14 chrX 38100447 38100744 -138873396 + AluY SINE Alu 1 293 -18 1830 196 24 47 chrX 38100744 38100923 -138873217 - MLT1A2 LTR MaLR -191 183 1 4906 177 62 14 chrX 38100923 38101723 -138872417 + L1MB7 LINE L1 5228 6184 0 796 320 19 4 chrX 38101993 38102249 -138871891 + MIR SINE MIR 1 260 -2 189 184 265 0 chrX 38102325 38102374 -138871766 + MIR SINE MIR 63 124 -84 718 267 111 5 chrX 38102418 38102635 -138871505 + MIR SINE MIR 23 262 0 452 255 121 25 chrX 38103237 38103394 -138870746 - L2 LINE L2 0 3313 3142 1503 158 12 0 chrX 38103539 38103786 -138870354 - L1M2 LINE L1 -597 5715 5466 * 2004 158 114 0 chrX 38103780 38104184 -138869956 + L1MA9 LINE L1 5825 6274 -38 238 293 135 61 chrX 38105443 38105700 -138868440 + L2 LINE L2 2779 3042 -271 353 270 143 32 chrX 38105737 38105863 -138868277 + L2 LINE L2 3114 3253 -19 935 336 121 27 chrX 38105919 38106589 -138867551 + L2 LINE L2 2079 2811 -503 277 224 1 69 chrX 38106719 38106806 -138867334 - MLT1I LTR MaLR 0 567 309 2600 184 34 91 chrX 38107014 38107633 -138866507 - MLT1E LTR MaLR 0 593 10 245 186 0 51 chrX 38107633 38107692 -138866448 - MLT1I LTR MaLR -263 146 91 261 298 76 69 chrX 38108416 38108547 -138865593 - L2 LINE L2 -214 3058 2927 1123 193 85 22 chrX 38108605 38109045 -138865095 - MLT1E LTR MaLR -31 562 1 2694 163 65 12 chrX 38109120 38109600 -138864540 + LTR22 LTR ERVK 1 505 -4 210 308 0 31 chrX 38109889 38109954 -138864186 + L2 LINE L2 3134 3196 -76 232 232 0 18 chrX 38110123 38110179 -138863961 + L1ME LINE L1 5710 5764 -357 201 39 0 0 chrX 38110183 38110209 -138863931 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 868 186 7 7 chrX 38110209 38110354 -138863786 - FRAM SINE Alu -31 145 1 979 212 11 0 chrX 38110610 38110794 -138863346 + MER5A DNA MER1_type 1 186 -3 301 283 64 96 chrX 38111148 38111462 -138862678 + L2 LINE L2 100 403 -2911 1035 105 0 0 chrX 38112257 38112390 -138861750 + AluSq/x SINE Alu 1 133 -180 2198 94 3 0 chrX 38112392 38112678 -138861462 + AluY SINE Alu 1 287 -24 34 0 0 0 chrX 38112678 38112712 -138861428 + AT_rich Low_complexity Low_complexity 1 34 0 424 226 89 42 chrX 38112712 38112880 -138861260 - HAL1 LINE L1 -906 1601 1426 272 340 49 32 chrX 38113411 38113596 -138860544 + L2 LINE L2 1176 1363 -1951 2625 189 78 5 chrX 38113760 38114362 -138859778 + L1MC3 LINE L1 1582 2349 -4033 264 30 0 0 chrX 38114362 38114395 -138859745 + (CA)n Simple_repeat Simple_repeat 2 34 0 2625 189 78 5 chrX 38114395 38114450 -138859690 + L1MC3 LINE L1 2349 2399 -3983 1893 301 41 16 chrX 38114452 38115033 -138859107 + L1MDb LINE L1 8 603 -5806 364 181 164 26 chrX 38115129 38115245 -138858895 + L1MB8 LINE L1 6038 6169 -9 9362 173 71 56 chrX 38115249 38118354 -138855786 + L1MC3 LINE L1 4186 7429 -592 271 302 35 0 chrX 38118354 38118440 -138855700 + MLT1F1 LTR MaLR 35 123 -444 9362 173 71 56 chrX 38118440 38118649 -138855491 + L1MC3 LINE L1 7429 7633 -388 2480 76 0 0 chrX 38118649 38118952 -138855188 + AluY SINE Alu 1 303 -8 843 169 43 33 chrX 38118952 38119107 -138855033 + L1ME LINE L1 5428 5587 -579 3182 53 0 0 chrX 38119107 38119501 -138854639 - L1PA7 LINE L1 -2 6152 5759 410 279 14 20 chrX 38119580 38119727 -138854413 + L2 LINE L2 2118 2263 -1051 711 208 0 8 chrX 38119736 38119866 -138854274 + MER45A DNA AcHobo 1 129 -49 28 29 0 0 chrX 38119897 38119932 -138854208 + AT_rich Low_complexity Low_complexity 1 35 0 554 112 0 11 chrX 38119932 38120021 -138854119 - L1P LINE L1 -1136 5010 4923 186 281 16 16 chrX 38120127 38120191 -138853949 - MER5A DNA MER1_type -91 98 35 * 201 219 24 0 chrX 38120162 38120203 -138853937 + MER5A DNA MER1_type 137 178 -11 2089 169 78 30 chrX 38121063 38121536 -138852604 - L1MD2 LINE L1 -3 6356 5861 2822 219 73 21 chrX 38121538 38122267 -138851873 - L1MDb LINE L1 -5185 1224 458 368 238 0 48 chrX 38122312 38122396 -138851744 - L1MDb LINE L1 -6320 89 10 550 128 0 68 chrX 38122720 38122853 -138851287 + L1MB2 LINE L1 6048 6171 0 186 298 0 0 chrX 38123202 38123249 -138850891 + L2 LINE L2 3218 3264 -8 505 284 19 60 chrX 38123361 38123576 -138850564 - MIR SINE MIR -25 237 32 279 352 70 0 chrX 38123955 38124083 -138850057 + L2 LINE L2 3172 3308 -5 265 254 8 45 chrX 38124103 38124237 -138849903 + MER113 DNA MER1_type? 2 130 -391 250 277 15 0 chrX 38124347 38124412 -138849728 + MER113 DNA MER1_type? 456 521 0 460 221 200 0 chrX 38124462 38124607 -138849533 - MER5B DNA MER1_type -4 174 1 651 233 146 32 chrX 38125297 38125516 -138848624 - MIR SINE MIR -3 259 16 287 289 0 12 chrX 38125536 38125619 -138848521 - MIR3 SINE MIR -23 185 104 1226 239 173 31 chrX 38125654 38126132 -138848008 - L2 LINE L2 -3 3310 2765 613 198 161 6 chrX 38126572 38126734 -138847406 + MER5A DNA MER1_type 1 187 -2 14981 198 52 14 chrX 38126788 38126847 -138847293 - L1PB1 LINE L1 -1 6866 6811 2277 101 0 19 chrX 38126847 38127163 -138846977 - AluSx SINE Alu -2 310 1 14981 198 52 14 chrX 38127163 38133750 -138840390 - L1PB1 LINE L1 -56 6811 6 982 211 81 63 chrX 38133765 38133867 -138840273 - L2 LINE L2 -521 2793 2694 2370 85 0 0 chrX 38133867 38134161 -138839979 + AluSc SINE Alu 1 294 -15 982 211 81 63 chrX 38134161 38134377 -138839763 - L2 LINE L2 -620 2694 2466 2268 113 0 0 chrX 38134377 38134677 -138839463 + AluY SINE Alu 1 300 -11 982 211 81 63 chrX 38134677 38134689 -138839451 - L2 LINE L2 -848 2466 2456 386 281 106 19 chrX 38136024 38136184 -138837956 - MIR SINE MIR -43 219 46 756 233 161 9 chrX 38136362 38136585 -138837555 + MIR SINE MIR 6 262 0 228 220 17 17 chrX 38136779 38136838 -138837302 + L2 LINE L2 3214 3272 0 261 316 20 0 chrX 38137198 38137296 -138836844 + L2 LINE L2 2140 2239 -1075 232 111 0 0 chrX 38137298 38137334 -138836806 + MER63 DNA MER1_type 4 39 -891 356 125 31 94 chrX 38137334 38137451 -138836689 - L1M4 LINE L1 -407 5755 5647 559 313 111 16 chrX 38137453 38137696 -138836444 + L2 LINE L2 3007 3272 0 1497 238 45 55 chrX 38138660 38139008 -138835132 + L1ME3A LINE L1 5624 5967 -203 1811 171 3 0 chrX 38139008 38139301 -138834839 + AluJo SINE Alu 5 298 -14 1497 238 45 55 chrX 38139301 38139482 -138834658 + L1ME3A LINE L1 5967 6148 -22 578 298 57 36 chrX 38139520 38139768 -138834372 + MIR SINE MIR 8 260 -2 911 226 40 33 chrX 38139770 38140044 -138834096 - L1MCb LINE L1 -5364 681 406 982 162 94 27 chrX 38140047 38140310 -138833830 + MLT1B LTR MaLR 5 226 -164 1800 234 96 9 chrX 38140310 38140874 -138833266 + L1MD3 LINE L1 5391 6003 -1992 * 2574 156 24 28 chrX 38140407 38140908 -138833232 + L1MB8 LINE L1 5530 6028 -150 543 228 16 0 chrX 38140937 38141064 -138833076 - L1MD3 LINE L1 -34 7961 7833 2507 204 28 15 chrX 38141066 38141605 -138832535 - L1MD2 LINE L1 -216 6143 5598 2081 67 21 0 chrX 38141620 38141905 -138832235 + L1PA14 LINE L1 5869 6159 -2 6380 198 53 17 chrX 38141917 38143874 -138830266 - L1MDa LINE L1 -3580 2960 933 300 276 0 66 chrX 38143909 38143985 -138830155 - L1MDa LINE L1 -6343 197 127 1086 227 59 0 chrX 38143992 38144230 -138829910 - L1MDa LINE L1 -5452 1088 837 575 273 12 12 chrX 38144236 38144401 -138829739 - L1MDa LINE L1 -6357 183 19 591 174 14 14 chrX 38144411 38144555 -138829585 + L1MB8 LINE L1 6033 6176 -2 2186 116 0 17 chrX 38144589 38144891 -138829249 + AluSx SINE Alu 1 297 -15 371 377 52 5 chrX 38145085 38145276 -138828864 - MIR SINE MIR -6 256 57 255 346 108 49 chrX 38145294 38145479 -138828661 + L2 LINE L2 3077 3272 0 8864 224 44 39 chrX 38145609 38148312 -138825828 - L1M4 LINE L1 -886 5260 2542 332 264 16 16 chrX 38348312 38348437 -138625703 + L1M4b LINE L1 2266 2390 -4569 2332 102 3 6 chrX 38348506 38348820 -138625320 + AluSp SINE Alu 1 313 0 2303 106 3 0 chrX 38348854 38349157 -138624983 + AluSx SINE Alu 1 304 -8 26 30 0 0 chrX 38349403 38349436 -138624704 + AT_rich Low_complexity Low_complexity 1 33 0 2970 281 79 47 chrX 38349437 38350738 -138623402 + L1M4 LINE L1 3 1345 -5514 7628 219 33 32 chrX 38350741 38351655 -138622485 + L1M4 LINE L1 3895 4806 -2189 1599 209 70 11 chrX 38351655 38352029 -138622111 + MSTD LTR MaLR 1 396 0 7628 219 33 32 chrX 38352029 38352724 -138621416 + L1M4 LINE L1 4806 5499 -1496 2173 108 15 80 chrX 38352724 38352764 -138621376 + THE1B LTR MaLR 1 42 -322 2342 106 0 3 chrX 38352764 38353075 -138621065 - AluSx SINE Alu -2 310 1 2173 108 15 80 chrX 38353075 38353423 -138620717 + THE1B LTR MaLR 42 364 0 7628 219 33 32 chrX 38353423 38354086 -138620054 + L1M4 LINE L1 5499 6178 -817 2235 108 7 3 chrX 38354086 38354392 -138619748 + AluSg SINE Alu 1 307 -3 7628 219 33 32 chrX 38354392 38354606 -138619534 + L1M4 LINE L1 6178 6390 -605 4659 78 24 0 chrX 38354610 38355234 -138618906 - L1PA10 LINE L1 -4 6164 5526 2128 244 48 33 chrX 38355378 38355963 -138618177 + L1M4b LINE L1 2625 3208 -3749 16338 36 5 0 chrX 38355963 38358699 -138615441 + L1PA4 LINE L1 3414 6152 -3 2128 244 48 33 chrX 38358699 38359190 -138614950 + L1M4b LINE L1 3208 3690 -3267 1917 178 40 0 chrX 38359186 38359562 -138614578 - L1 LINE L1 -1015 5131 4741 * 1442 139 80 51 chrX 38359558 38359933 -138614207 + L1MA7 LINE L1 5903 6288 -3 * 26 0 0 0 chrX 38359933 38359959 -138614181 + AT_rich Low_complexity Low_complexity 1 26 0 675 120 10 0 chrX 38359962 38360084 -138614056 - L1ME LINE L1 -704 5466 5343 456 249 101 29 chrX 38360075 38360284 -138613856 - L1 LINE L1 -2110 4036 3813 * 4819 176 42 17 chrX 38360565 38361467 -138612673 - L1MC3 LINE L1 0 7785 6850 261 0 0 0 chrX 38361467 38361496 -138612644 + (TG)n Simple_repeat Simple_repeat 1 29 0 4819 176 42 17 chrX 38361496 38361671 -138612469 - L1MC3 LINE L1 -935 6850 6681 2020 256 92 65 chrX 38361741 38361809 -138612331 - L1M4c LINE L1 -4571 2388 2323 1862 157 13 16 chrX 38361809 38362115 -138612025 - AluJo SINE Alu -5 307 3 2020 256 92 65 chrX 38362115 38364347 -138609793 - L1M4c LINE L1 -4636 2323 25 215 281 53 0 chrX 38364369 38364426 -138609714 - L2 LINE L2 -5 3308 3249 455 288 50 14 chrX 38364445 38364664 -138609476 - L1ME1 LINE L1 -5 6161 5935 581 315 50 17 chrX 38365293 38365534 -138608606 - MIR SINE MIR -13 249 1 245 278 167 16 chrX 38366204 38366330 -138607810 - MIR SINE MIR -22 240 96 230 242 87 155 chrX 38366553 38366863 -138607277 + L3 LINE CR1 1104 1392 -185 1913 162 0 3 chrX 38367290 38367598 -138606542 + AluJb SINE Alu 2 308 -4 567 329 55 71 chrX 38367702 38368082 -138606058 - L2 LINE L2 -2 3270 2897 2251 86 0 7 chrX 38368631 38368922 -138605218 - AluSx SINE Alu -23 289 1 353 282 135 18 chrX 38370156 38370319 -138603821 + MIR SINE MIR 3 184 -78 1288 168 19 29 chrX 38371864 38372174 -138601966 + MER33 DNA MER1_type 1 307 -17 432 243 133 75 chrX 38372257 38372430 -138601710 + MIR SINE MIR 77 259 -3 441 225 92 33 chrX 38372667 38372787 -138601353 - L2 LINE L2 0 3313 3187 410 310 193 5 chrX 38373240 38373437 -138600703 + MIR SINE MIR 23 256 -6 392 265 81 44 chrX 38373562 38373698 -138600442 - MER63 DNA MER1_type -294 768 2 220 302 0 0 chrX 38373915 38373968 -138600172 + L2 LINE L2 3219 3271 -1 6340 221 68 74 chrX 38374345 38375901 -138598239 - L1MB7 LINE L1 -9 6244 4680 2365 91 0 0 chrX 38375901 38376198 -138597942 + AluSx SINE Alu 1 297 -15 6340 221 68 74 chrX 38376198 38377429 -138596711 - L1MB7 LINE L1 -1573 4680 3443 1801 176 5 57 chrX 38377429 38377833 -138596307 + MLT1B LTR MaLR 1 383 -7 6340 221 68 74 chrX 38377833 38378693 -138595447 - L1MB7 LINE L1 -2810 3443 2493 1664 171 20 40 chrX 38378693 38378997 -138595143 - AluJo SINE Alu -13 299 2 6340 221 68 74 chrX 38378997 38379381 -138594759 - L1MB7 LINE L1 -3760 2493 2108 2275 109 12 0 chrX 38379396 38379725 -138594415 - L1PA14 LINE L1 -2 6159 5827 1526 98 6 66 chrX 38379725 38379929 -138594211 - L1M3 LINE L1 -603 5558 5370 2339 89 7 0 chrX 38379929 38380221 -138593919 - AluSx SINE Alu -18 294 1 1526 98 6 66 chrX 38380221 38380322 -138593818 - L1M3 LINE L1 -791 5370 5265 405 289 58 50 chrX 38380311 38380671 -138593469 - L1MEc LINE L1 -4320 2076 1714 * 2512 271 92 50 chrX 38380665 38383102 -138591038 - L1M4c LINE L1 -4436 2702 11 2623 113 3 3 chrX 38383167 38383531 -138590609 - THE1B LTR MaLR 0 364 1 299 291 154 0 chrX 38384354 38384471 -138589669 + L2 LINE L2 3138 3272 0 312 298 60 68 chrX 38384843 38385209 -138588931 + L1ME LINE L1 4908 5270 -876 530 315 89 14 chrX 38385326 38385685 -138588455 + L1ME LINE L1 5420 5805 -316 340 226 22 15 chrX 38387489 38387626 -138586514 + GA-rich Low_complexity Low_complexity 3 140 0 560 282 108 47 chrX 38390061 38390369 -138583771 + L1ME4a LINE L1 5614 5961 -160 279 0 0 0 chrX 38390369 38390400 -138583740 + (TG)n Simple_repeat Simple_repeat 2 32 0 560 282 108 47 chrX 38390400 38390555 -138583585 + L1ME4a LINE L1 5961 6105 -16 809 227 82 28 chrX 38390622 38390868 -138583272 - MIR SINE MIR 0 262 9 279 273 193 0 chrX 38391138 38391226 -138582914 - L2 LINE L2 0 3272 3168 279 236 18 0 chrX 38391430 38391485 -138582655 - L2 LINE L2 -8 3264 3209 205 237 72 72 chrX 38391538 38391635 -138582505 - MIR SINE MIR 0 262 166 253 312 203 14 chrX 38392035 38392173 -138581967 - MIR SINE MIR -76 186 23 331 302 50 60 chrX 38394267 38394449 -138579691 - MIR SINE MIR -63 199 20 431 290 120 14 chrX 38394712 38394929 -138579211 - MIR SINE MIR 0 262 23 2183 111 10 3 chrX 38395040 38395347 -138578793 - AluJb SINE Alu -3 309 1 541 234 36 55 chrX 38395738 38396012 -138578128 + L1ME4a LINE L1 5652 5920 -201 188 314 0 23 chrX 38396167 38396253 -138577887 + MIR SINE MIR 129 212 -50 188 370 110 23 chrX 38396373 38396546 -138577594 + L2 LINE L2 2560 2747 -567 488 209 209 0 chrX 38396738 38396885 -138577255 + MER5A DNA MER1_type 6 188 -1 930 248 24 16 chrX 38397148 38397402 -138576738 + MIR SINE MIR 5 260 -2 485 373 72 0 chrX 38398807 38398960 -138575180 + MER91A DNA MER1_type 33 196 0 3246 143 19 19 chrX 38399163 38399679 -138574461 - MLT2B1 LTR ERVL -4 516 1 240 259 49 37 chrX 38400157 38400238 -138573902 + L3 LINE CR1 1043 1124 -453 2195 119 3 0 chrX 38400287 38400580 -138573560 + AluSx SINE Alu 1 294 -18 504 250 8 8 chrX 38400810 38400938 -138573202 - MIR SINE MIR -34 228 101 2776 135 2 38 chrX 38400938 38401390 -138572750 + L1MB1 LINE L1 5730 6165 -3 22 0 0 0 chrX 38401394 38401416 -138572724 + AT_rich Low_complexity Low_complexity 1 22 0 4464 199 34 84 chrX 38401468 38401939 -138572201 + L1ME1 LINE L1 4171 4664 -1502 2324 104 0 0 chrX 38401939 38402236 -138571904 - AluSx SINE Alu -15 297 1 4464 199 34 84 chrX 38402236 38402499 -138571641 + L1ME1 LINE L1 4664 4939 -1227 1540 173 3 89 chrX 38402499 38402823 -138571317 - AluJo SINE Alu -16 296 1 4464 199 34 84 chrX 38402823 38404200 -138569940 + L1ME1 LINE L1 4939 6162 -4 13121 214 72 32 chrX 38404289 38405295 -138568845 + L1MB1 LINE L1 1 965 -5027 1972 145 3 10 chrX 38405295 38405605 -138568535 + AluJo SINE Alu 1 308 -4 13121 214 72 32 chrX 38405605 38406780 -138567360 + L1MB1 LINE L1 965 2092 -3900 1737 34 0 10 chrX 38406780 38406986 -138567154 + AluY SINE Alu 96 299 -12 13121 214 72 32 chrX 38406986 38408189 -138565951 + L1MB1 LINE L1 2092 3246 -2746 2321 154 9 0 chrX 38408189 38408534 -138565606 - MER7A DNA MER2_type 0 346 1 13121 214 72 32 chrX 38408534 38409782 -138564358 + L1MB1 LINE L1 3246 4443 -1549 1559 183 0 36 chrX 38409782 38410056 -138564084 - AluJb SINE Alu -20 292 29 13121 214 72 32 chrX 38410056 38410577 -138563563 + L1MB1 LINE L1 4443 4942 -1050 2274 107 0 23 chrX 38410577 38410886 -138563254 + AluSx SINE Alu 1 302 -10 13121 214 72 32 chrX 38410886 38411819 -138562321 + L1MB1 LINE L1 4942 5992 0 342 45 0 0 chrX 38412986 38413030 -138561110 + (CA)n Simple_repeat Simple_repeat 2 45 0 414 204 0 0 chrX 38413231 38413334 -138560806 + (TA)n Simple_repeat Simple_repeat 1 103 0 937 17 0 63 chrX 38413368 38413543 -138560597 + (TA)n Simple_repeat Simple_repeat 1 164 0 934 242 62 12 chrX 38414058 38414302 -138559838 + MIR SINE MIR 4 259 -3 375 295 23 58 chrX 38414506 38414679 -138559461 + L3 LINE CR1 1395 1561 -16 231 284 0 74 chrX 38414917 38414998 -138559142 - MIR3 SINE MIR -36 172 98 229 329 12 12 chrX 38415380 38415462 -138558678 + GA-rich Low_complexity Low_complexity 3 84 0 576 261 144 33 chrX 38415670 38416060 -138558080 + L1MC4a LINE L1 5789 6221 -1587 205 167 28 0 chrX 38416387 38416423 -138557717 + GA-rich Low_complexity Low_complexity 2 38 0 442 290 35 14 chrX 38416561 38416706 -138557434 + MIR SINE MIR 20 167 -95 586 298 34 24 chrX 38416905 38417113 -138557027 + MIR SINE MIR 9 218 -44 437 148 12 0 chrX 38419571 38419652 -138554488 + GA-rich Low_complexity Low_complexity 1 82 0 351 207 0 0 chrX 38421036 38421094 -138553046 - 5S rRNA rRNA -63 58 1 370 171 92 0 chrX 38421280 38421356 -138552784 + MIR SINE MIR 70 152 -110 1759 63 0 0 chrX 38421358 38421565 -138552575 + AluSc SINE Alu 89 295 -14 188 216 118 0 chrX 38421688 38421739 -138552401 + L2 LINE L2 3216 3272 0 306 164 0 0 chrX 38422194 38422249 -138551891 + (ATTG)n Simple_repeat Simple_repeat 1 55 0 482 240 25 50 chrX 38422581 38422702 -138551438 - MIR SINE MIR -61 147 30 614 288 47 38 chrX 38422908 38423120 -138551020 + MIR SINE MIR 20 233 -29 1338 285 121 26 chrX 38426253 38426825 -138547315 + L3 LINE CR1 950 1575 -2 680 194 144 7 chrX 38428363 38428502 -138545638 - FRAM SINE Alu -8 158 1 283 259 0 0 chrX 38428565 38428619 -138545521 - U1 snRNA snRNA -32 133 80 1720 138 44 27 chrX 38429390 38429686 -138544454 + AluJb SINE Alu 1 301 -11 385 362 20 7 chrX 38429714 38429866 -138544274 - MIR3 SINE MIR -39 169 16 207 0 0 0 chrX 38430678 38430701 -138543439 + (A)n Simple_repeat Simple_repeat 1 23 0 462 79 0 0 chrX 38431497 38431560 -138542580 + (CGG)n Simple_repeat Simple_repeat 2 64 0 192 152 0 0 chrX 38432587 38432620 -138541520 + A-rich Low_complexity Low_complexity 2 34 0 489 304 0 59 chrX 38434334 38434538 -138539602 + MIR SINE MIR 21 212 -50 440 311 122 22 chrX 38434833 38435013 -138539127 + MIR3 SINE MIR 2 199 -9 333 0 0 0 chrX 38435119 38435156 -138538984 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 38435733 38435754 -138538386 + AT_rich Low_complexity Low_complexity 1 21 0 2111 94 13 20 chrX 38435918 38436217 -138537923 + AluSg SINE Alu 1 297 -13 184 29 29 29 chrX 38436275 38436309 -138537831 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2191 152 27 25 chrX 38436314 38436722 -138537418 - L1MB1 LINE L1 -17 6151 5743 1936 121 18 25 chrX 38436722 38437167 -138536973 - L1MA9 LINE L1 0 6312 5812 4951 102 40 3 chrX 38437193 38437917 -138536223 - Tigger3(Golem) DNA MER2_type -1 3028 2278 643 213 0 0 chrX 38437908 38438016 -138536124 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1801 143 19 23 chrX 38438034 38438342 -138535798 - L1M2 LINE L1 -519 5793 5487 694 151 36 0 chrX 38438349 38438488 -138535652 + L1M2 LINE L1 2714 2857 -3992 * 799 143 24 100 chrX 38438483 38438601 -138535539 - L1M2 LINE L1 -1399 4747 4650 2144 97 6 64 chrX 38438601 38438930 -138535210 - AluSg SINE Alu 0 310 1 799 143 24 100 chrX 38438930 38439021 -138535119 - L1M2 LINE L1 -1496 4650 4554 5718 146 27 25 chrX 38439037 38439155 -138534985 + L1MA4 LINE L1 5181 5297 -1003 378 0 0 0 chrX 38439155 38439197 -138534943 + (CA)n Simple_repeat Simple_repeat 2 43 0 5718 146 27 25 chrX 38439197 38439708 -138534432 + L1MA4 LINE L1 5297 5806 -494 1522 184 0 71 chrX 38439708 38440034 -138534106 + AluJo SINE Alu 1 303 -9 5718 146 27 25 chrX 38440034 38440165 -138533975 + L1MA4 LINE L1 5806 5935 -365 2293 94 3 38 chrX 38440165 38440485 -138533655 + AluSc SINE Alu 1 309 0 5718 146 27 25 chrX 38440485 38440841 -138533299 + L1MA4 LINE L1 5935 6299 -1 398 148 40 0 chrX 38440888 38440989 -138533151 + CT-rich Low_complexity Low_complexity 2 106 0 1318 174 13 0 chrX 38440992 38441216 -138532924 - AluJo SINE Alu 0 312 86 2468 90 0 0 chrX 38441248 38441558 -138532582 + AluSq SINE Alu 2 311 -2 308 319 69 17 chrX 38441611 38441727 -138532413 - MIR SINE MIR -20 242 121 360 0 0 0 chrX 38443683 38443723 -138530417 + (TG)n Simple_repeat Simple_repeat 2 41 0 192 40 0 0 chrX 38444535 38444560 -138529580 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 505 322 65 82 chrX 38445046 38445289 -138528851 + L2 LINE L2 2444 2690 -582 1569 193 0 0 chrX 38445289 38445528 -138528612 - MER8 DNA MER2_type 0 239 1 505 322 65 82 chrX 38445528 38446127 -138528013 + L2 LINE L2 2690 3270 -2 420 335 49 30 chrX 38446503 38446706 -138527434 + L2 LINE L2 2849 3055 -217 1227 268 49 6 chrX 38446755 38447080 -138527060 - MLT1K LTR MaLR -2 586 248 287 272 144 67 chrX 38447196 38447257 -138526883 + L2 LINE L2 3076 3131 -141 351 0 0 0 chrX 38447257 38447296 -138526844 + (TG)n Simple_repeat Simple_repeat 2 40 0 287 272 144 67 chrX 38447296 38447414 -138526726 + L2 LINE L2 3131 3269 -3 810 204 113 29 chrX 38447697 38447937 -138526203 + MIR SINE MIR 2 261 -1 775 258 5 16 chrX 38448495 38448689 -138525451 - MIR SINE MIR -19 243 52 1070 31 79 0 chrX 38448704 38448831 -138525309 - MER85 DNA T2_type -2 137 1 474 239 71 39 chrX 38448859 38449014 -138525126 + MIR SINE MIR 103 262 0 453 319 70 25 chrX 38449603 38449888 -138524252 + L1ME4a LINE L1 5548 5845 -276 593 270 25 35 chrX 38450294 38450494 -138523646 + MIR SINE MIR 23 220 -42 2149 146 22 28 chrX 38450495 38450797 -138523343 + MLT1A1 LTR MaLR 1 302 -63 1793 179 0 13 chrX 38450797 38451104 -138523036 - AluJo SINE Alu -9 303 1 2149 146 22 28 chrX 38451104 38451163 -138522977 + MLT1A1 LTR MaLR 302 360 -5 183 214 24 24 chrX 38451165 38451207 -138522933 + L2 LINE L2 3219 3260 -12 * 307 225 50 0 chrX 38451201 38451281 -138522859 + MIR SINE MIR 120 203 -59 1970 137 7 3 chrX 38451738 38452049 -138522091 + AluSq SINE Alu 1 312 0 267 287 57 41 chrX 38452076 38452198 -138521942 - MIR SINE MIR -6 256 133 277 315 167 63 chrX 38452281 38453113 -138521027 + L2 LINE L2 2345 3263 -9 811 231 30 15 chrX 38453252 38453455 -138520685 + L2 LINE L2 3105 3310 -3 252 361 112 39 chrX 38454701 38454864 -138519276 + L2 LINE L2 2516 2666 -648 2105 124 0 0 chrX 38454864 38455178 -138518962 - AluSx SINE Alu 0 314 1 252 361 112 39 chrX 38455178 38455343 -138518797 + L2 LINE L2 2666 2869 -445 974 237 46 50 chrX 38455377 38455638 -138518502 - MIR SINE MIR -6 256 2 184 282 64 39 chrX 38455854 38455932 -138518208 + L2 LINE L2 3201 3280 -33 577 227 73 84 chrX 38456124 38456255 -138517885 - L1MC4 LINE L1 -2 8040 7909 314 45 23 0 chrX 38456255 38456299 -138517841 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 577 227 73 84 chrX 38456299 38456524 -138517616 - L1MC4 LINE L1 -133 7909 7688 329 242 118 50 chrX 38456529 38456690 -138517450 + MIR SINE MIR 64 235 -27 842 256 65 12 chrX 38456712 38456958 -138517182 + MIR SINE MIR 3 261 -1 21 36 0 0 chrX 38457121 38457149 -138516991 + AT_rich Low_complexity Low_complexity 1 28 0 1003 206 36 12 chrX 38458647 38458894 -138515246 - L1MB8 LINE L1 -7 6171 5919 626 238 33 0 chrX 38458914 38459065 -138515075 + MIR SINE MIR 70 225 -37 1700 112 22 0 chrX 38459215 38459439 -138514701 - MER30 DNA MER1_type 0 230 2 435 287 101 42 chrX 38459698 38459935 -138514205 - L3 LINE CR1 -539 1038 788 302 0 26 0 chrX 38460567 38460605 -138513535 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5537 90 9 7 chrX 38460789 38461479 -138512661 - LTR8 LTR ERV1 0 691 1 21821 134 62 64 chrX 38461479 38462344 -138511796 - HUERS-P1 LTR ERV1 0 6263 5398 2401 90 3 0 chrX 38462344 38462644 -138511496 - AluSp SINE Alu -12 301 1 21821 134 62 64 chrX 38462644 38463098 -138511042 - HUERS-P1 LTR ERV1 -865 5398 4945 2235 78 0 11 chrX 38463098 38463404 -138510736 + AluSc SINE Alu 1 303 0 21821 134 62 64 chrX 38463404 38464997 -138509143 - HUERS-P1 LTR ERV1 -1318 4945 3350 2264 119 6 0 chrX 38464997 38465308 -138508832 - AluSp SINE Alu 0 313 1 21821 134 62 64 chrX 38465308 38466250 -138507890 - HUERS-P1 LTR ERV1 -2913 3350 2408 5726 27 2 6 chrX 38466250 38466883 -138507257 + L1PA5 LINE L1 5525 6154 0 21821 134 62 64 chrX 38466883 38467054 -138507086 - HUERS-P1 LTR ERV1 -3855 2408 2238 2271 95 0 10 chrX 38467054 38467348 -138506792 - AluSx SINE Alu -21 291 1 21821 134 62 64 chrX 38467348 38469134 -138505006 - HUERS-P1 LTR ERV1 -4025 2238 1 5215 85 6 54 chrX 38469134 38469860 -138504280 - LTR8 LTR ERV1 0 691 1 866 275 29 16 chrX 38470260 38470419 -138503721 + MIR SINE MIR 6 162 -100 1913 157 0 14 chrX 38470419 38470576 -138503564 - AluJb SINE Alu -22 290 132 300 27 0 0 chrX 38470576 38470613 -138503527 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2183 109 0 3 chrX 38470613 38470898 -138503242 - AluSx SINE Alu -28 284 1 1913 157 0 14 chrX 38470898 38471033 -138503107 - AluJb SINE Alu -178 134 1 866 275 29 16 chrX 38471033 38471117 -138503023 + MIR SINE MIR 162 252 -10 180 242 65 32 chrX 38471122 38471184 -138502956 - L3 LINE CR1 -822 755 692 1271 177 9 14 chrX 38471783 38471998 -138502142 - MER58A DNA MER1_type 0 224 11 1245 299 51 50 chrX 38472058 38472769 -138501371 + L2 LINE L2 2530 3244 -69 265 216 57 11 chrX 38472817 38472905 -138501235 - L1MA10 LINE L1 -2 6332 6241 1500 202 63 27 chrX 38472915 38473246 -138500894 - MER2 DNA MER2_type 0 344 2 241 174 0 0 chrX 38473269 38473315 -138500825 + LTR66 LTR ERVL 394 439 -171 242 284 14 0 chrX 38473328 38473402 -138500738 - L1ME1 LINE L1 -77 6089 6015 6645 200 19 17 chrX 38473514 38473973 -138500167 - L1MB4 LINE L1 0 6678 6221 2372 100 0 0 chrX 38473973 38474273 -138499867 - AluSx SINE Alu -12 300 1 6645 200 19 17 chrX 38474273 38474801 -138499339 - L1MB4 LINE L1 -457 6221 5696 2291 116 0 0 chrX 38474801 38475104 -138499036 - AluSx SINE Alu -9 303 1 6645 200 19 17 chrX 38475104 38476495 -138497645 - L1MB4 LINE L1 -982 5696 4302 1605 245 25 4 chrX 38476490 38476967 -138497173 - L1MB4 LINE L1 -2709 3935 3449 * 316 185 25 37 chrX 38476959 38477040 -138497100 - L1MB4 LINE L1 -5634 908 829 * 723 293 91 56 chrX 38477088 38477274 -138496866 - L1MB4 LINE L1 -5829 713 535 705 26 52 0 chrX 38477274 38477390 -138496750 + (TA)n Simple_repeat Simple_repeat 2 123 0 1579 147 42 53 chrX 38477393 38477678 -138496462 - AluJo SINE Alu -30 282 1 723 293 91 56 chrX 38477678 38478094 -138496046 - L1MB4 LINE L1 -6008 534 86 1609 81 0 27 chrX 38478108 38478194 -138495946 - L1MA3 LINE L1 -3 6302 6215 2452 148 52 47 chrX 38478194 38478620 -138495520 + MSTA LTR MaLR 1 428 0 1609 81 0 27 chrX 38478620 38478754 -138495386 - L1MA3 LINE L1 -90 6215 6088 181 356 0 0 chrX 38478798 38478857 -138495283 - MER5B DNA MER1_type -119 59 1 495 304 92 48 chrX 38480154 38480447 -138493693 - LTR33A LTR ERVL -15 508 203 468 297 67 113 chrX 38480911 38481238 -138492902 + L2 LINE L2 2961 3272 0 1999 189 101 2 chrX 38481604 38482001 -138492139 + MER63B DNA MER1_type 1 436 0 2355 95 0 3 chrX 38482414 38482719 -138491421 - AluSx SINE Alu -8 304 1 671 258 83 39 chrX 38482995 38483224 -138490916 - MIR SINE MIR -22 240 2 266 264 345 9 chrX 38484267 38484377 -138489763 + MER5B DNA MER1_type 1 147 -31 23 0 0 0 chrX 38484548 38484571 -138489569 + AT_rich Low_complexity Low_complexity 1 23 0 276 30 0 0 chrX 38484672 38484705 -138489435 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chrX 38486407 38486440 -138487700 + AT_rich Low_complexity Low_complexity 1 33 0 2519 113 31 22 chrX 38486725 38487141 -138486999 - L1MA7 LINE L1 -103 6188 5769 4384 96 53 5 chrX 38487156 38487274 -138486866 - L1MA2 LINE L1 0 6304 6193 869 164 0 0 chrX 38487274 38487402 -138486738 - FLAM_C SINE Alu -5 128 1 4384 96 53 5 chrX 38487402 38487919 -138486221 - L1MA2 LINE L1 -111 6193 5638 252 195 0 0 chrX 38488133 38488174 -138485966 - MIR SINE MIR -79 129 89 475 279 76 70 chrX 38488277 38488660 -138485480 + L3 LINE CR1 1177 1561 -16 333 306 90 21 chrX 38489469 38489613 -138484527 + MER5A DNA MER1_type 35 188 -1 312 253 26 102 chrX 38489627 38489831 -138484309 - MIR SINE MIR -25 183 1 270 260 39 13 chrX 38491534 38491611 -138482529 - MIR SINE MIR -70 192 114 999 231 0 34 chrX 38491621 38491855 -138482285 - MIR SINE MIR -2 260 35 2261 107 0 0 chrX 38491913 38492222 -138481918 - AluY SINE Alu -2 309 1 1999 133 44 3 chrX 38492222 38492516 -138481624 - AluJo SINE Alu -6 306 1 385 288 196 0 chrX 38492660 38492813 -138481327 - L2 LINE L2 -1 3271 3089 * 401 318 114 30 chrX 38492794 38493030 -138481110 + MIR SINE MIR 6 261 -1 308 330 0 0 chrX 38493906 38493997 -138480143 - MIR SINE MIR -116 146 56 1267 228 33 22 chrX 38493997 38494489 -138479651 - MLT1E LTR MaLR 0 593 1 313 243 14 0 chrX 38495158 38495228 -138478912 - L2 LINE L2 0 3313 3243 1006 236 26 9 chrX 38495587 38495820 -138478320 - MIR SINE MIR -1 261 25 223 333 25 66 chrX 38495852 38496050 -138478090 - L2 LINE L2 -264 3008 2819 1767 161 9 38 chrX 38496065 38496382 -138477758 + AluJb SINE Alu 1 308 -4 259 257 14 68 chrX 38496444 38496518 -138477622 - L2 LINE L2 -3 3269 3200 471 285 12 30 chrX 38496546 38496711 -138477429 - L2 LINE L2 -179 3093 2932 606 239 0 15 chrX 38497028 38497158 -138476982 - MIR SINE MIR -113 149 22 264 273 73 45 chrX 38497275 38497321 -138476819 + MIR SINE MIR 102 145 -107 1330 271 48 23 chrX 38497321 38497638 -138476502 + MLT1I LTR MaLR 1 332 -77 216 97 0 0 chrX 38497638 38497669 -138476471 + (CA)n Simple_repeat Simple_repeat 2 32 0 1330 271 48 23 chrX 38497669 38497750 -138476390 + MLT1I LTR MaLR 331 409 0 264 273 73 45 chrX 38497750 38497818 -138476322 + MIR SINE MIR 145 212 -40 300 355 9 9 chrX 38498573 38498683 -138475457 - MIR SINE MIR -128 134 25 1048 152 134 172 chrX 38498685 38499074 -138475066 - MLT1A2 LTR MaLR 0 374 1 2285 201 46 0 chrX 38499074 38499491 -138474649 - MLT1A2-int LTR MaLR 0 1735 1300 324 164 0 60 chrX 38499559 38499626 -138474514 - MLT1A2-int LTR MaLR -994 741 679 1845 170 40 54 chrX 38499742 38500362 -138473778 - MLT1A2-int LTR MaLR -629 742 5 2075 197 19 96 chrX 38500366 38500408 -138473732 - MLT2B1 LTR ERVL 0 520 476 1254 95 0 0 chrX 38500408 38500587 -138473553 + (TA)n Simple_repeat Simple_repeat 2 180 0 2075 197 19 96 chrX 38500587 38501107 -138473033 - MLT2B1 LTR ERVL -44 476 1 308 323 121 20 chrX 38501265 38501463 -138472677 + L2 LINE L2 2653 2870 -444 331 307 140 7 chrX 38502757 38502907 -138471233 - MIR SINE MIR -73 189 20 202 200 0 0 chrX 38504021 38504056 -138470084 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 377 376 14 28 chrX 38504081 38504371 -138469769 - L2 LINE L2 -341 2973 2688 966 288 141 9 chrX 38504683 38505214 -138468926 + L2 LINE L2 1684 2284 -1030 12737 100 15 17 chrX 38505214 38506034 -138468106 - Tigger1 DNA MER2_type -1 2417 1596 2175 109 3 16 chrX 38506034 38506338 -138467802 - AluSx SINE Alu -12 300 1 12737 100 15 17 chrX 38506338 38507355 -138466785 - Tigger1 DNA MER2_type -822 1596 585 5905 224 123 51 chrX 38507356 38508615 -138465525 + L1MA4 LINE L1 1 1458 -5751 192 40 0 0 chrX 38508615 38508640 -138465500 + (CACCC)n Simple_repeat Simple_repeat 5 29 0 5905 224 123 51 chrX 38508640 38509439 -138464701 + L1MA4 LINE L1 1458 2198 -5011 * 9577 159 23 10 chrX 38509434 38511022 -138463118 + L1MA4 LINE L1 4628 6244 -964 3895 182 8 48 chrX 38511022 38511774 -138462366 + MER72 LTR ERV1 1 722 0 9577 159 23 10 chrX 38511774 38511935 -138462205 + L1MA4 LINE L1 6244 6401 -807 7203 106 16 16 chrX 38511925 38512412 -138461728 + L1MA1 LINE L1 5016 5502 -800 * 2122 123 30 0 chrX 38512412 38512713 -138461427 + AluSx SINE Alu 1 310 -2 7203 106 16 16 chrX 38512713 38513503 -138460637 + L1MA1 LINE L1 5502 6293 -9 6188 133 17 1 chrX 38513516 38514476 -138459664 + L1MA4 LINE L1 6379 7353 -9 3324 127 30 74 chrX 38514476 38515100 -138459040 - Tigger1 DNA MER2_type -1821 597 1 3839 133 45 23 chrX 38515162 38515898 -138458242 - LTR1B LTR ERV1 0 826 1 191 302 86 17 chrX 38515902 38516018 -138458122 + L2 LINE L2 2358 2481 -833 697 280 98 64 chrX 38516018 38516383 -138457757 + L2 LINE L2 2772 3158 -155 3745 155 75 5 chrX 38516383 38517035 -138457105 - LTR34 LTR ERV1 -1 698 1 697 280 98 64 chrX 38517035 38517193 -138456947 + L2 LINE L2 3158 3309 -4 2237 82 7 3 chrX 38517332 38517623 -138456517 + AluSx SINE Alu 1 292 -20 34 0 0 0 chrX 38518697 38518731 -138455409 + AT_rich Low_complexity Low_complexity 1 34 0 405 282 56 14 chrX 38519228 38519370 -138454770 + MIR SINE MIR 28 175 -87 411 343 10 43 chrX 38519687 38519894 -138454246 - L2 LINE L2 -210 3062 2863 555 348 44 0 chrX 38519914 38520072 -138454068 + MER91A DNA MER1_type 2 166 -30 196 226 69 88 chrX 38520118 38520220 -138453920 + L2 LINE L2 2794 2893 -421 217 139 0 0 chrX 38520735 38520771 -138453369 - L2 LINE L2 -3 3310 3275 548 282 56 42 chrX 38520902 38521118 -138453022 + MIR SINE MIR 5 223 -39 200 298 58 29 chrX 38521265 38521369 -138452771 + L2 LINE L2 3165 3271 -42 * 216 317 85 12 chrX 38521365 38521447 -138452693 + L2 LINE L2 3155 3242 -30 439 110 0 121 chrX 38521453 38521544 -138452596 + MADE1 DNA Mariner 1 80 0 757 236 25 0 chrX 38521548 38521709 -138452431 - MIR SINE MIR -62 200 36 196 259 111 0 chrX 38521723 38521777 -138452363 + L2 LINE L2 3210 3269 -3 301 243 48 19 chrX 38522377 38522480 -138451660 - MIR SINE MIR -49 213 108 2255 222 95 14 chrX 38522691 38523740 -138450400 + L1MB5 LINE L1 2074 3223 -3159 2159 159 9 61 chrX 38523822 38524141 -138449999 + MER54A LTR ERVL 494 787 -114 2338 90 0 7 chrX 38524141 38524440 -138449700 + AluSg SINE Alu 1 297 -13 2159 159 9 61 chrX 38524440 38524547 -138449593 + MER54A LTR ERVL 787 898 -3 6955 55 1 2 chrX 38524551 38525363 -138448777 + L1PA6 LINE L1 5344 6154 0 2897 249 85 17 chrX 38525412 38526405 -138447735 + L1MB5 LINE L1 3244 4303 -2079 2812 188 28 7 chrX 38526613 38527188 -138446952 + L1MB5 LINE L1 5593 6179 -231 2392 213 108 12 chrX 38527199 38527792 -138446348 - MER21B LTR ERV1 -1 862 213 438 181 0 0 chrX 38527790 38527862 -138446278 - MER21B LTR ERV1 -779 84 13 * 1230 166 18 22 chrX 38527888 38528111 -138446029 + L1MB5 LINE L1 6181 6402 -8 2021 245 68 35 chrX 38528160 38528967 -138445173 - L1MDa LINE L1 -4189 2351 1518 * 5791 127 1 2 chrX 38528966 38529812 -138444328 + L1PA15 LINE L1 5315 6159 -6 991 268 77 48 chrX 38529922 38530232 -138443908 - MLT1E LTR MaLR -150 443 125 22036 64 1 9 chrX 38530373 38533223 -138440917 - L1P LINE L1 -3318 2828 2 12400 127 27 34 chrX 38533223 38535865 -138438275 - L1P3 LINE L1 -3743 2718 9 1022 231 17 37 chrX 38536133 38536181 -138437959 - L1M4 LINE L1 -1577 4569 4522 3694 92 34 4 chrX 38536181 38536679 -138437461 + LTR10D LTR ERV1 1 513 0 1022 231 17 37 chrX 38536679 38536928 -138437212 - L1M4 LINE L1 -1624 4522 4278 238 302 48 0 chrX 38537168 38537231 -138436909 - MIR SINE MIR -62 146 81 4244 191 70 21 chrX 38537387 38538103 -138436037 + L1MB8 LINE L1 4441 5121 -1057 2308 107 0 10 chrX 38538103 38538411 -138435729 + AluSp SINE Alu 1 305 -8 4244 191 70 21 chrX 38538411 38539302 -138434838 + L1MB8 LINE L1 5121 6131 -47 2092 133 33 5 chrX 38539430 38539812 -138434328 - L1M2 LINE L1 -669 5622 5231 1739 229 48 77 chrX 38539810 38540431 -138433709 - L1M3e LINE L1 -6251 779 177 * 984 218 0 15 chrX 38540845 38541051 -138433089 + AluJo SINE Alu 106 308 -4 3571 213 167 55 chrX 38541622 38542803 -138431337 - L1M2b LINE L1 -5896 1313 1 11549 108 19 15 chrX 38542829 38544533 -138429607 + Tigger1 DNA MER2_type 585 2295 -123 192 234 0 21 chrX 38544866 38544913 -138429227 + MER5A DNA MER1_type 59 104 -85 781 224 73 41 chrX 38545018 38545264 -138428876 - MIR SINE MIR -4 258 5 268 289 44 11 chrX 38545689 38545779 -138428361 - L2 LINE L2 -17 3296 3204 717 312 72 24 chrX 38545895 38546299 -138427841 - LTR16A LTR ERVL -7 443 2 305 271 51 17 chrX 38546958 38547076 -138427064 + L2 LINE L2 2974 3095 -177 315 250 100 0 chrX 38547975 38548055 -138426085 + L2 LINE L2 3185 3272 0 498 297 27 14 chrX 38548918 38549066 -138425074 + L3 LINE CR1 1407 1556 -21 3721 265 87 30 chrX 38549542 38550359 -138423781 - L1M4 LINE L1 -4867 1675 740 288 0 0 0 chrX 38550359 38550391 -138423749 + (TG)n Simple_repeat Simple_repeat 2 33 0 3721 265 87 30 chrX 38550391 38551018 -138423122 - L1M4 LINE L1 -5802 740 150 2066 236 58 99 chrX 38551013 38552103 -138422037 + L1M4 LINE L1 2174 3218 -2928 * 18872 77 32 25 chrX 38552208 38553126 -138421014 + MER61A-int LTR ERV1 2557 3467 -1750 2436 65 3 3 chrX 38553126 38553434 -138420706 - AluSx SINE Alu -4 308 1 18872 77 32 25 chrX 38553434 38555157 -138418983 + MER61A-int LTR ERV1 3467 5217 0 1831 120 120 10 chrX 38555157 38555466 -138418674 + MER61A LTR ERV1 1 343 0 1041 210 24 8 chrX 38555466 38555718 -138418422 + L1M4 LINE L1 4969 5224 -922 417 272 37 44 chrX 38556644 38556780 -138417360 + MIR SINE MIR 119 253 -9 5583 147 28 0 chrX 38556943 38557823 -138416317 + Tigger1 DNA MER2_type 1 905 -1513 1947 114 4 4 chrX 38557923 38558194 -138415946 - AluSx SINE Alu -41 271 1 368 236 254 33 chrX 38558247 38558439 -138415701 - MIR SINE MIR -17 245 19 2411 56 3 0 chrX 38558677 38559005 -138415135 + AluSp SINE Alu 1 329 0 467 213 35 57 chrX 38560247 38560388 -138413752 - MIR SINE MIR -120 142 5 1270 158 78 89 chrX 38560389 38560938 -138413202 + Tigger2 DNA MER2_type 1 543 -2175 556 171 0 0 chrX 38560938 38561020 -138413120 + AluJ/FRAM SINE Alu 214 295 -17 1274 147 30 0 chrX 38561053 38561250 -138412890 + Tigger2 DNA MER2_type 552 754 -1964 950 171 149 22 chrX 38561315 38561496 -138412644 - AluJb SINE Alu -23 289 86 1446 142 9 0 chrX 38561496 38561714 -138412426 - AluJo SINE Alu -92 220 1 647 175 63 0 chrX 38561714 38561840 -138412300 + Tigger2 DNA MER2_type 2492 2625 -93 1203 204 0 42 chrX 38561841 38562081 -138412059 + MER8 DNA MER2_type 2 231 -8 513 115 39 115 chrX 38562088 38562192 -138411948 + Tigger2 DNA MER2_type 2623 2718 0 444 229 0 79 chrX 38562208 38562348 -138411792 - MER112 DNA MER1_type -131 129 1 323 276 96 27 chrX 38562351 38562477 -138411663 - L1ME LINE L1 -522 5640 5505 317 255 75 107 chrX 38562528 38562727 -138411413 - L1ME LINE L1 -647 5517 5325 291 299 179 0 chrX 38562745 38562862 -138411278 - MIR SINE MIR -77 185 48 458 248 28 48 chrX 38563002 38563147 -138410993 - MIR SINE MIR -52 210 69 202 290 14 29 chrX 38563153 38563222 -138410918 - MIR SINE MIR -115 93 26 767 204 68 0 chrX 38563572 38563734 -138410406 + MER5B DNA MER1_type 6 178 0 342 352 91 17 chrX 38563769 38563945 -138410195 - MER5A DNA MER1_type 0 189 1 313 305 46 33 chrX 38564429 38564580 -138409560 - L2 LINE L2 -515 2799 2647 560 310 44 41 chrX 38566162 38566501 -138407639 + MER110-int LTR ERV1 158 497 -4150 281 25 25 0 chrX 38566636 38566676 -138407464 - L1P LINE L1 -998 5148 5108 14583 90 3 38 chrX 38566677 38568898 -138405242 - L1P LINE L1 -1126 5020 2878 1321 218 22 80 chrX 38568998 38569411 -138404729 - MLT2B3 LTR ERVL -161 393 5 198 0 0 0 chrX 38570310 38570332 -138403808 + (TG)n Simple_repeat Simple_repeat 2 23 0 2280 79 0 41 chrX 38570695 38571012 -138403128 - AluY SINE Alu -7 304 1 2920 6 6 0 chrX 38571018 38571333 -138402807 - AluYb8 SINE Alu -1 317 1 2062 75 7 11 chrX 38571543 38571850 -138402290 + AluY SINE Alu 12 317 0 1109 297 70 34 chrX 38571850 38572404 -138401736 + L2 LINE L2 2737 3309 -4 383 203 248 20 chrX 38572679 38572832 -138401308 + L2 LINE L2 3121 3308 -5 182 283 67 0 chrX 38572851 38572911 -138401229 + MIR SINE MIR 120 183 -79 835 228 0 0 chrX 38573393 38573555 -138400585 + MLT1A2 LTR MaLR 1 162 -212 1804 140 11 7 chrX 38573607 38573879 -138400261 + AluJo SINE Alu 13 285 -27 957 248 43 26 chrX 38673915 38674060 -138300080 - L1M1 LINE L1 -7246 319 178 536 117 0 0 chrX 38674060 38674137 -138300003 - MADE1 DNA Mariner 0 80 4 957 248 43 26 chrX 38674137 38674294 -138299846 - L1M1 LINE L1 -7387 178 12 * 5089 230 36 10 chrX 38674279 38677591 -138296549 - L1 LINE L1 -2877 3451 71 771 282 126 66 chrX 38677723 38678414 -138295726 - L1M4 LINE L1 -913 5233 4492 2216 120 0 10 chrX 38678414 38678715 -138295425 - AluSx SINE Alu -14 298 1 771 282 126 66 chrX 38678715 38678778 -138295362 - L1M4 LINE L1 -1654 4492 4434 1110 314 21 33 chrX 38679440 38679953 -138294187 - HERV16 LTR ERVL -3428 1568 1062 320 328 14 141 chrX 38679953 38680380 -138293760 + L2 LINE L2 2838 3210 -62 24 32 0 0 chrX 38680755 38680786 -138293354 + AT_rich Low_complexity Low_complexity 1 31 0 198 0 0 0 chrX 38682053 38682075 -138292065 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1266 254 8 22 chrX 38683117 38683519 -138290621 + L1ME LINE L1 5380 5775 -395 1388 142 0 9 chrX 38684718 38684929 -138289211 - AluJb SINE Alu -17 295 87 3512 151 8 29 chrX 38685177 38685768 -138288372 + L1PA16 LINE L1 5588 6166 0 2234 68 50 0 chrX 38685861 38686142 -138287998 - AluY SINE Alu -16 295 1 545 253 41 54 chrX 38686247 38686572 -138287568 - LTR40a LTR ERVL -41 478 119 372 330 58 49 chrX 38686823 38687272 -138286868 + L1M4 LINE L1 4071 4523 -1623 226 291 19 39 chrX 38687424 38687527 -138286613 + L1M4 LINE L1 4746 4846 -1300 252 0 0 0 chrX 38687534 38687562 -138286578 + (CA)n Simple_repeat Simple_repeat 1 28 0 2166 224 54 18 chrX 38688774 38689323 -138284817 - MER77 LTR ERV1 -4 601 54 743 187 52 19 chrX 38691816 38691971 -138282169 + MLT1A2 LTR MaLR 2 161 -213 247 229 114 57 chrX 38693211 38693316 -138280824 + MLT1A2 LTR MaLR 330 440 -214 219 69 0 0 chrX 38693520 38693549 -138280591 + (T)n Simple_repeat Simple_repeat 1 29 0 314 321 112 25 chrX 38695692 38695888 -138278252 - L1MC4 LINE L1 -420 7622 7410 223 293 111 30 chrX 38695891 38696089 -138278051 + L2 LINE L2 2647 2860 -454 207 139 0 0 chrX 38696485 38696521 -138277619 + (TG)n Simple_repeat Simple_repeat 2 37 0 2955 162 46 22 chrX 38696930 38696973 -138277167 + LTR49 LTR ERV1 11 51 -544 2346 95 0 0 chrX 38696973 38697268 -138276872 - AluY SINE Alu -16 295 1 2955 162 46 22 chrX 38697268 38697825 -138276315 + LTR49 LTR ERV1 51 595 0 3965 171 75 18 chrX 38697826 38698564 -138275576 + LTR49-int LTR ERV1 1 780 -5551 252 196 45 125 chrX 38698595 38698707 -138275433 + LTR49-int LTR ERV1 1154 1256 -5502 * 2516 216 58 59 chrX 38698705 38698909 -138275231 + LTR49-int LTR ERV1 782 985 -5346 4516 52 2 0 chrX 38698909 38699460 -138274680 + L1PA7 LINE L1 5618 6169 0 2516 216 58 59 chrX 38699460 38700373 -138273767 + LTR49-int LTR ERV1 985 2103 -4228 544 202 48 58 chrX 38700383 38700587 -138273553 + LTR49-int LTR ERV1 1150 3129 -3202 * 764 249 40 26 chrX 38700542 38700815 -138273325 + LTR57-int LTR ERVL 1234 1510 -3833 265 108 0 0 chrX 38701038 38701075 -138273065 + LTR49 LTR ERV1 175 211 -384 2138 187 78 2 chrX 38701421 38701817 -138272323 + MSTB LTR MaLR 1 426 0 2338 178 83 4 chrX 38702047 38702526 -138271614 + L1MB3 LINE L1 5639 6155 -28 1539 192 40 21 chrX 38702527 38702853 -138271287 + L1MB5 LINE L1 5803 6131 -49 2479 84 3 0 chrX 38702853 38703155 -138270985 + L1PA8 LINE L1 5852 6163 -9 1539 192 40 21 chrX 38703155 38703191 -138270949 + L1MB5 LINE L1 6131 6165 -15 1667 231 63 43 chrX 38703763 38704252 -138269888 - MER21B LTR ERV1 -48 815 317 4464 174 35 50 chrX 38705293 38706261 -138267879 - LTR13 LTR ERVK 0 954 1 1999 200 49 92 chrX 38707099 38707674 -138266466 - MLT2B3 LTR ERVL 0 554 5 22 35 0 0 chrX 38708663 38708692 -138265448 + AT_rich Low_complexity Low_complexity 1 29 0 476 301 59 0 chrX 38708930 38709169 -138264971 - L1ME3A LINE L1 -223 5947 5695 1034 180 101 0 chrX 38709212 38709440 -138264700 + Tigger6 DNA MER2_type 1347 1597 0 420 296 82 15 chrX 38709452 38709719 -138264421 - L1ME3A LINE L1 -1430 4716 4432 * 426 154 0 0 chrX 38709699 38709764 -138264376 - MLT1C-int LTR MaLR -1306 65 1 1904 180 123 26 chrX 38709765 38710188 -138263952 - MLT1C LTR MaLR -3 464 1 468 269 24 42 chrX 38710271 38710438 -138263702 + LTR41 LTR ERVL 9 172 -601 311 183 42 28 chrX 38711101 38711172 -138262968 + LTR41 LTR ERVL 693 764 -9 994 311 111 16 chrX 38711321 38712177 -138261963 - L1ME3A LINE L1 -1878 4268 3332 260 224 122 59 chrX 38712422 38712725 -138261415 - L1M4 LINE L1 -1426 4720 4399 1191 308 14 28 chrX 38712862 38713290 -138260850 + L1M3a LINE L1 1 422 -5533 308 350 32 6 chrX 38713509 38713666 -138260474 + L1M3a LINE L1 544 704 -5251 * 2588 288 48 31 chrX 38713651 38714890 -138259250 + L1MA7 LINE L1 302 1175 -4780 922 209 38 25 chrX 38714888 38715123 -138259017 + L1MA7 LINE L1 2016 2253 -3781 * 5176 154 29 43 chrX 38715125 38717103 -138257037 + L1MA7 LINE L1 3670 6175 -4 324 285 33 40 chrX 38717613 38717764 -138256376 + L1ME2 LINE L1 5734 5883 -281 242 268 62 18 chrX 38717873 38717985 -138256155 + L1MC4a LINE L1 5860 5976 -1832 358 274 33 75 chrX 38718154 38718366 -138255774 + HAL1b LINE L1 1109 1311 -37 332 323 60 29 chrX 38718509 38718825 -138255315 + L1 LINE L1 3931 4256 -1890 624 117 48 0 chrX 38718834 38718937 -138255203 - L1MA9 LINE L1 0 7731 7624 2674 141 39 5 chrX 38718937 38719349 -138254791 - MSTB LTR MaLR 0 426 1 9436 158 33 16 chrX 38719362 38720972 -138253168 - MSTB-int LTR MaLR -14 1637 1 2592 158 39 5 chrX 38720972 38721384 -138252756 - MSTB LTR MaLR 0 426 1 4479 160 42 23 chrX 38721384 38721429 -138252711 - L1MA9 LINE L1 -103 7628 7585 186 43 0 0 chrX 38721429 38721452 -138252688 + (TG)n Simple_repeat Simple_repeat 2 24 0 4479 160 42 23 chrX 38721452 38721853 -138252287 - L1MA9 LINE L1 -146 7585 7193 1616 188 44 44 chrX 38721853 38722194 -138251946 - MER2 DNA MER2_type -2 342 2 4479 160 42 23 chrX 38722194 38722603 -138251537 - L1MA9 LINE L1 -538 7193 6756 2102 154 73 18 chrX 38722627 38722970 -138251170 - THE1B LTR MaLR -2 362 1 12208 88 17 8 chrX 38722971 38724536 -138249604 - THE1B-int LTR MaLR -1 1579 1 607 147 0 11 chrX 38724536 38724631 -138249509 - THE1B LTR MaLR 0 375 282 406 39 0 19 chrX 38724612 38724664 -138249476 - THE1B LTR MaLR -313 51 1 * 2767 177 86 8 chrX 38724664 38725287 -138248853 - L1MA9 LINE L1 -811 6754 5967 287 175 0 0 chrX 38725327 38725390 -138248750 - L1MA9 LINE L1 -1826 5739 5677 749 226 0 0 chrX 38725409 38725542 -138248598 + FLAM_C SINE Alu 1 133 0 3439 248 48 24 chrX 38725567 38726996 -138247144 - L1MA9 LINE L1 -2928 4637 3157 1978 154 3 0 chrX 38726996 38727289 -138246851 - AluSx SINE Alu -16 296 3 3439 248 48 24 chrX 38727289 38727659 -138246481 - L1MA9 LINE L1 -4408 3157 2797 232 178 22 0 chrX 38727684 38727729 -138246411 + L1 LINE L1 4282 4327 -1819 4954 178 26 31 chrX 38727746 38728846 -138245294 + L1 LINE L1 4302 5396 -750 * 8757 43 20 2 chrX 38728841 38728936 -138245204 - L1PA14 LINE L1 -1034 5112 5020 6532 88 16 15 chrX 38728936 38729297 -138244843 + L1PA14 LINE L1 5130 5489 -672 2293 101 0 3 chrX 38729297 38729595 -138244545 + AluY SINE Alu 1 297 -14 6532 88 16 15 chrX 38729595 38730264 -138243876 + L1PA14 LINE L1 5489 6161 0 8757 43 20 2 chrX 38730264 38731246 -138242894 - L1PA3 LINE L1 -1126 5020 4015 8326 19 0 0 chrX 38731247 38732413 -138241727 + L1PA3 LINE L1 4990 6155 0 2473 231 98 42 chrX 38732420 38733291 -138240849 + L1ME LINE L1 1631 2455 -4085 2524 60 3 0 chrX 38733291 38733592 -138240548 + AluY SINE Alu 1 302 -9 2473 231 98 42 chrX 38733592 38733800 -138240340 + L1ME LINE L1 2455 2650 -3890 2441 124 0 16 chrX 38733836 38734206 -138239934 + THE1B LTR MaLR 1 364 0 10229 98 49 38 chrX 38734206 38735770 -138238370 + THE1B-int LTR MaLR 1 1580 0 2119 130 28 14 chrX 38735770 38736123 -138238017 + THE1B LTR MaLR 1 358 -6 541 178 116 39 chrX 38736136 38736265 -138237875 + MSTD LTR MaLR 258 396 0 349 325 136 53 chrX 38736335 38736769 -138237371 + L1M4 LINE L1 3769 4238 -1908 23 33 0 0 chrX 38737678 38737708 -138236432 + AT_rich Low_complexity Low_complexity 1 30 0 1785 160 0 42 chrX 38738029 38738335 -138235805 - AluJb SINE Alu -19 293 1 338 284 32 6 chrX 38738362 38738544 -138235596 + HAL1b LINE L1 339 1606 -827 1030 154 6 0 chrX 38738625 38738807 -138235333 - L1MB1 LINE L1 -1 6167 5985 1738 175 21 16 chrX 38738813 38739190 -138234950 - L1MB1 LINE L1 -232 5936 5558 1309 177 7 4 chrX 38739203 38739576 -138234564 + L1M3 LINE L1 5118 5492 -676 371 180 11 11 chrX 38739577 38739666 -138234474 + L1ME LINE L1 3033 3121 -3419 303 213 7 53 chrX 38740015 38740165 -138233975 - L1MC5 LINE L1 -184 7777 7635 7575 24 5 0 chrX 38740744 38742117 -138232023 + L1PA4 LINE L1 4771 6147 -8 921 223 14 105 chrX 38742300 38742445 -138231695 + L1ME LINE L1 5736 5893 -671 2178 113 10 0 chrX 38742445 38742747 -138231393 + AluY SINE Alu 1 305 -6 921 223 14 105 chrX 38742747 38742964 -138231176 + L1ME LINE L1 5893 6065 -499 334 329 116 14 chrX 38743567 38743774 -138230366 + L2 LINE L2 2743 2970 -344 219 234 32 75 chrX 38743968 38744062 -138230078 + L2 LINE L2 3178 3267 -5 404 277 80 100 chrX 38744576 38744687 -138229453 + L2 LINE L2 2815 2927 -386 9965 172 25 25 chrX 38744687 38746076 -138228064 - L1PA14 LINE L1 -17 6144 4758 2128 133 3 0 chrX 38746076 38746385 -138227755 - AluSx SINE Alu -2 310 1 9965 172 25 25 chrX 38746385 38747881 -138226259 - L1PA14 LINE L1 -1403 4758 3243 404 277 80 100 chrX 38747881 38748180 -138225960 + L2 LINE L2 2927 3217 -96 460 353 92 28 chrX 38748522 38748553 -138225587 + L2 LINE L2 2633 2661 -653 3156 44 7 7 chrX 38748553 38748959 -138225181 + L1PA7 LINE L1 5749 6154 0 460 353 92 28 chrX 38748959 38749244 -138224896 + L2 LINE L2 2661 2969 -345 213 277 15 31 chrX 38749385 38749450 -138224690 + L2 LINE L2 3208 3271 -1 204 339 0 9 chrX 38749614 38749726 -138224414 + (TCCA)n Simple_repeat Simple_repeat 1 111 0 265 226 9 9 chrX 38749740 38749846 -138224294 + (TCCA)n Simple_repeat Simple_repeat 2 107 0 442 339 6 0 chrX 38749923 38750100 -138224040 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 305 224 8 67 chrX 38751069 38751203 -138222937 + CT-rich Low_complexity Low_complexity 4 129 0 326 185 23 31 chrX 38751216 38751346 -138222794 + CT-rich Low_complexity Low_complexity 5 133 0 1644 130 0 16 chrX 38751820 38752074 -138222066 - MER1B DNA MER1_type -89 250 1 281 309 72 10 chrX 38752362 38752556 -138221584 - L1ME LINE L1 -419 5702 5497 301 345 28 14 chrX 38752572 38752714 -138221426 - MIR SINE MIR -101 161 18 2187 110 44 47 chrX 38753278 38753643 -138220497 - THE1B LTR MaLR 0 364 1 546 318 43 35 chrX 38754351 38754606 -138219534 + MIR SINE MIR 2 258 -4 3751 31 0 0 chrX 38755294 38755775 -138218365 - L1PA4 LINE L1 -794 5352 4872 6871 21 0 1 chrX 38755775 38756610 -138217530 + L1PA4 LINE L1 5355 6155 0 1439 176 16 64 chrX 38756741 38757117 -138217023 - LTR49-int LTR ERV1 -3307 3024 2667 371 159 0 0 chrX 38757117 38757186 -138216954 - L1PA16 LINE L1 -5 6161 6093 232 297 102 31 chrX 38757454 38757582 -138216558 - L2 LINE L2 -10 3303 3167 196 287 178 16 chrX 38757636 38757765 -138216375 - MIR SINE MIR -82 180 31 196 222 22 0 chrX 38758472 38758517 -138215623 + MIR SINE MIR 67 112 -150 28 0 0 0 chrX 38758647 38758675 -138215465 + AT_rich Low_complexity Low_complexity 1 28 0 2095 66 103 0 chrX 38759325 38759596 -138214544 + AluSp SINE Alu 1 299 -14 402 273 142 6 chrX 38759917 38760100 -138214040 + LTR40c LTR ERVL 152 359 -106 565 253 86 0 chrX 38760614 38760776 -138213364 - MIR SINE MIR -22 240 65 26 50 0 0 chrX 38760982 38761022 -138213118 + AT_rich Low_complexity Low_complexity 1 40 0 256 293 29 29 chrX 38761345 38761485 -138212655 + L2 LINE L2 2839 2978 -294 2138 181 56 52 chrX 38761907 38762405 -138211735 + MLT1D LTR MaLR 5 504 -1 661 118 31 16 chrX 38762406 38762533 -138211607 + MLT1D-int LTR MaLR 1 129 -1242 276 267 23 0 chrX 38762537 38762623 -138211517 + MLT1D-int LTR MaLR 1260 1347 -24 1716 177 79 48 chrX 38762627 38763045 -138211095 + MLT1D LTR MaLR 1 431 -74 22 0 0 0 chrX 38763419 38763441 -138210699 + AT_rich Low_complexity Low_complexity 1 22 0 2324 173 11 11 chrX 38763604 38764044 -138210096 + L1M1 LINE L1 2 441 -6768 11985 211 43 40 chrX 38764097 38765931 -138208209 + L1M1 LINE L1 1231 3057 -4308 1774 179 0 52 chrX 38765931 38766255 -138207885 + AluJo SINE Alu 3 309 -3 11985 211 43 40 chrX 38766255 38768434 -138205706 + L1M1 LINE L1 3057 5227 -2138 786 154 31 8 chrX 38768434 38768564 -138205576 - FLAM_C SINE Alu 0 133 1 11985 211 43 40 chrX 38768564 38769063 -138205077 + L1M1 LINE L1 5227 5723 -1642 569 157 0 22 chrX 38769063 38769152 -138204988 + AluS SINE Alu 2 88 -225 11985 211 43 40 chrX 38769152 38770091 -138204049 + L1M1 LINE L1 5723 6867 -498 1458 173 83 0 chrX 38770091 38770369 -138203771 + MSTB LTR MaLR 1 301 -125 1666 195 96 6 chrX 38770371 38770735 -138203405 - MSTB LTR MaLR -29 397 1 3924 217 71 4 chrX 38770739 38771656 -138202484 - L1M2 LINE L1 -5093 1756 779 2125 223 23 19 chrX 38771783 38772196 -138201944 - L1M2 LINE L1 -6362 487 70 2181 139 19 14 chrX 38772196 38772556 -138201584 + THE1B LTR MaLR 1 362 -2 2125 223 23 19 chrX 38772556 38772627 -138201513 - L1M2 LINE L1 -6779 70 1 * 11907 197 40 12 chrX 38772617 38774446 -138199694 + L1MA9 LINE L1 2121 3898 -2414 17244 29 0 1 chrX 38774446 38777285 -138196855 + L1PA3 LINE L1 3319 6155 0 11907 197 40 12 chrX 38777285 38779524 -138194616 + L1MA9 LINE L1 3898 6312 0 1670 257 206 9 chrX 38779526 38780410 -138193730 - L1MEc LINE L1 -1578 4637 3580 198 0 0 0 chrX 38780410 38780432 -138193708 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6281 26 0 3 chrX 38780432 38781208 -138192932 - L1PA3 LINE L1 -18 6137 5364 1852 259 85 30 chrX 38781203 38781693 -138192447 - L1MEc LINE L1 -2636 3579 3117 * 243 0 0 0 chrX 38781693 38781720 -138192420 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 253 0 0 0 chrX 38781719 38781747 -138192393 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 1852 259 85 30 chrX 38781720 38781747 -138192393 - L1MEc LINE L1 -3098 3117 3093 2232 79 0 4 chrX 38781747 38782026 -138192114 - AluSc SINE Alu -1 305 1 1852 259 85 30 chrX 38782026 38782529 -138191611 - L1MEc LINE L1 -3122 3093 2530 646 282 50 31 chrX 38782556 38783013 -138191127 - L1MEc LINE L1 -4706 1690 1225 2477 288 56 7 chrX 38783015 38783994 -138190146 - L1MEc LINE L1 -5223 1173 147 189 267 100 44 chrX 38784000 38784090 -138190050 + L2 LINE L2 3149 3243 -70 180 280 64 56 chrX 38784128 38784253 -138189887 - MIR SINE MIR -72 190 65 352 291 39 0 chrX 38785577 38785680 -138188460 - L2 LINE L2 -30 3242 3136 239 246 0 0 chrX 38786150 38786211 -138187929 - L2 LINE L2 -56 3257 3197 11361 22 0 0 chrX 38787285 38789385 -138184755 - L1PA3 LINE L1 -4 6151 4063 911 212 24 9 chrX 38789523 38789735 -138184405 + L1M4 LINE L1 4 218 -6324 * 1425 193 14 14 chrX 38789728 38790085 -138184055 + L1M4 LINE L1 1011 1367 -5175 * 41324 37 5 3 chrX 38790084 38796154 -138177986 + L1PA3 LINE L1 74 6155 0 1752 219 67 43 chrX 38796131 38796778 -138177362 + L1M4 LINE L1 826 1487 -4661 * 846 286 47 20 chrX 38796801 38797353 -138176787 + L1M4 LINE L1 2180 2746 -3900 277 284 0 0 chrX 38797386 38797481 -138176659 + L1M4 LINE L1 4617 4711 -1435 1914 238 7 2 chrX 38797533 38798076 -138176064 + L1M4 LINE L1 2752 3297 -3347 * 4079 214 34 19 chrX 38798070 38799839 -138174301 + L1M4 LINE L1 4500 6290 -392 1369 210 70 21 chrX 38799841 38800226 -138173914 - LTR52 LTR ERVL -5 416 13 1152 209 173 9 chrX 38800263 38800821 -138173319 + LTR50 LTR ERVL 4 751 -44 3349 199 68 2 chrX 38800870 38801920 -138172220 - LTR52-int LTR ERVL -23 3533 2368 1815 183 6 11 chrX 38801925 38802274 -138171866 + MLT2C1 LTR ERVL 3 349 -48 389 217 0 17 chrX 38802293 38802408 -138171732 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 35 0 0 0 chrX 38802430 38802465 -138171675 + AT_rich Low_complexity Low_complexity 1 35 0 384 22 0 0 chrX 38802477 38802522 -138171618 + (CA)n Simple_repeat Simple_repeat 2 46 0 1816 190 20 11 chrX 38802523 38802875 -138171265 - LTR52-int LTR ERVL -1656 1900 1546 893 206 59 9 chrX 38803083 38803302 -138170838 - LTR52-int LTR ERVL -1999 1557 1328 269 149 21 0 chrX 38803399 38803446 -138170694 + LTR52-int LTR ERVL 1348 1395 -2161 53 17 0 0 chrX 38803469 38803529 -138170611 + AT_rich Low_complexity Low_complexity 1 60 0 771 95 29 0 chrX 38803556 38803802 -138170338 + (TA)n Simple_repeat Simple_repeat 1 253 0 3017 67 9 6 chrX 38803802 38804217 -138169923 - MLT2A1 LTR ERVL -34 481 1 1050 179 52 68 chrX 38804217 38804585 -138169555 - LTR52-int LTR ERVL -2218 1338 977 204 40 0 0 chrX 38804585 38804610 -138169530 + (TC)n Simple_repeat Simple_repeat 2 26 0 1064 167 25 10 chrX 38804637 38804835 -138169305 - LTR52-int LTR ERVL -2580 976 776 * 2607 181 41 65 chrX 38804832 38805513 -138168627 - LTR52-int LTR ERVL -2889 667 3 1140 177 164 35 chrX 38805514 38805881 -138168259 - LTR52 LTR ERVL -5 416 3 1845 192 10 16 chrX 38805881 38806267 -138167873 + L1MB7 LINE L1 5787 6170 -14 220 255 234 0 chrX 38806345 38806439 -138167701 + L2 LINE L2 3198 3313 0 265 254 92 49 chrX 38806569 38806711 -138167429 - L1ME4a LINE L1 -28 6093 5946 676 281 18 9 chrX 38806841 38807062 -138167078 - L1ME3A LINE L1 -5 6165 5943 185 0 0 39 chrX 38807216 38807242 -138166898 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 9403 30 0 200 chrX 38807248 38808989 -138165151 + SVA Other Other 1 1400 0 922 254 40 12 chrX 38809037 38809364 -138164776 + L1MDa LINE L1 75 410 -6130 270 288 38 0 chrX 38809708 38809788 -138164352 + L1MDa LINE L1 785 867 -5673 3003 222 76 46 chrX 38810169 38811225 -138162915 + L1MDa LINE L1 847 1870 -4670 801 113 8 0 chrX 38811225 38811358 -138162782 + L1MA4 LINE L1 6156 6289 -11 3003 222 76 46 chrX 38811358 38811756 -138162384 + L1MDa LINE L1 1870 2322 -4218 2220 113 0 0 chrX 38811756 38812047 -138162093 - AluSx SINE Alu -21 291 1 3003 222 76 46 chrX 38812047 38812246 -138161894 + L1MDa LINE L1 2322 2514 -4026 869 257 50 29 chrX 38812280 38812736 -138161404 - L1M4 LINE L1 -2739 3407 2942 10195 179 53 22 chrX 38812736 38815082 -138159058 - L1MC3 LINE L1 -13 7772 5355 32 43 0 0 chrX 38816111 38816157 -138157983 + AT_rich Low_complexity Low_complexity 1 46 0 189 74 0 0 chrX 38816314 38816341 -138157799 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 216 260 27 0 chrX 38816447 38816520 -138157620 + MIR SINE MIR 188 262 0 341 283 191 7 chrX 38816833 38816985 -138157155 + L2 LINE L2 3130 3309 -4 604 36 12 0 chrX 38817190 38817274 -138156866 - L1PA3 LINE L1 0 6155 6071 * 7409 28 0 0 chrX 38817261 38818906 -138155234 + L1PA6 LINE L1 4511 6154 0 453 267 67 33 chrX 38819856 38820036 -138154104 + MIR SINE MIR 45 230 -32 365 303 55 30 chrX 38821043 38821208 -138152932 + MIR SINE MIR 46 214 -48 222 351 69 23 chrX 38821623 38821754 -138152386 - L2 LINE L2 0 3272 3136 933 235 41 99 chrX 38821756 38822373 -138151767 - L2 LINE L2 0 3313 2737 335 281 100 12 chrX 38823207 38823361 -138150779 - MIR SINE MIR -61 147 2 214 235 204 20 chrX 38823910 38824008 -138150132 + MIR SINE MIR 32 147 -115 6181 40 1 7 chrX 38824413 38825166 -138148974 + L1PA5 LINE L1 5401 6149 -5 3347 84 76 2 chrX 38825166 38825677 -138148463 + L1MA2 LINE L1 5754 6304 0 24 32 0 0 chrX 38825677 38825708 -138148432 + AT_rich Low_complexity Low_complexity 1 31 0 243 269 71 28 chrX 38825772 38825913 -138148227 + MIR SINE MIR 108 254 -8 17865 147 37 31 chrX 38826152 38828606 -138145534 + L1MA3 LINE L1 10 2448 -5117 2123 119 0 0 chrX 38828606 38828909 -138145231 + AluSc SINE Alu 1 303 0 17865 147 37 31 chrX 38828909 38830799 -138143341 + L1MA3 LINE L1 2448 4354 -3211 1964 145 3 10 chrX 38830799 38831095 -138143045 + AluSq SINE Alu 1 294 -19 17865 147 37 31 chrX 38831095 38831511 -138142629 + L1MA3 LINE L1 4354 4766 -2799 1935 195 15 0 chrX 38831507 38831913 -138142227 + L1MA3 LINE L1 6306 6717 -848 * 4776 123 44 5 chrX 38831913 38832645 -138141495 + L1MA3 LINE L1 6942 7708 -16 2054 120 6 32 chrX 38832645 38832961 -138141179 - AluSx SINE Alu -4 308 1 4776 123 44 5 chrX 38832961 38832979 -138141161 + L1MA3 LINE L1 7708 7724 0 294 302 71 16 chrX 38832987 38833113 -138141027 - MLT1H LTR MaLR -96 453 321 1692 173 126 24 chrX 38833174 38833722 -138140418 + L1ME1 LINE L1 5090 5672 -494 848 138 6 3 chrX 38833724 38833866 -138140274 + MSTB2 LTR MaLR 1 135 -229 18495 195 74 13 chrX 38833866 38837570 -138136570 - L1PA13 LINE L1 -858 5939 1701 1867 138 44 10 chrX 38837570 38837866 -138136274 - AluSx SINE Alu -6 306 1 18495 195 74 13 chrX 38837866 38839677 -138134463 - L1PA13 LINE L1 -5096 1701 1 473 119 0 0 chrX 38839686 38839753 -138134387 + MSTB2 LTR MaLR 391 457 0 1390 259 41 37 chrX 38839753 38840244 -138133896 + L1ME1 LINE L1 5670 6162 -4 239 314 0 0 chrX 38840248 38840334 -138133806 + L1ME1 LINE L1 6007 6092 -74 279 232 0 0 chrX 38840661 38840717 -138133423 - L2 LINE L2 -2 3311 3256 8128 24 2 0 chrX 38840855 38842507 -138131633 + L1PA4 LINE L1 4494 6147 -8 405 282 61 8 chrX 38843204 38843335 -138130805 + L2 LINE L2 3172 3309 -4 325 274 10 39 chrX 38843479 38843581 -138130559 + MIR SINE MIR 37 135 -73 410 291 112 15 chrX 38843626 38843760 -138130380 - L2 LINE L2 -1 3271 3125 261 0 0 0 chrX 38844128 38844157 -138129983 + (TTA)n Simple_repeat Simple_repeat 1 29 0 208 342 71 13 chrX 38844199 38844354 -138129786 - MIR SINE MIR -32 230 67 1181 241 26 3 chrX 38844367 38844674 -138129466 + L1MC4 LINE L1 6774 7087 -955 2198 157 28 41 chrX 38844696 38845268 -138128872 + MLT2A2 LTR ERVL 1 554 0 260 143 0 20 chrX 38845270 38845319 -138128821 + L1MC4 LINE L1 7099 7146 -896 2738 155 43 26 chrX 38845327 38845467 -138128673 + L1MA8 LINE L1 5688 5824 -467 1727 189 3 0 chrX 38845467 38845764 -138128376 + AluJo SINE Alu 3 300 -12 2738 155 43 26 chrX 38845764 38846158 -138127982 + L1MA8 LINE L1 5824 6231 -60 345 285 39 31 chrX 38846167 38846297 -138127843 + MIR SINE MIR 122 252 -10 287 351 18 0 chrX 38846721 38846832 -138127308 - MIR SINE MIR -83 179 67 200 289 99 66 chrX 38846918 38847039 -138127101 + L2 LINE L2 3178 3302 -11 315 0 0 0 chrX 38847826 38847861 -138126279 + (CA)n Simple_repeat Simple_repeat 2 36 0 370 343 106 26 chrX 38847939 38848280 -138125860 + MLT1L LTR MaLR 149 516 -99 3070 286 80 45 chrX 38848306 38849577 -138124563 - L2 LINE L2 -14 3299 1974 2065 116 4 0 chrX 38849577 38849854 -138124286 - AluSq SINE Alu -27 286 9 3070 286 80 45 chrX 38849854 38850222 -138123918 - L2 LINE L2 -1339 1974 1620 204 67 0 0 chrX 38850301 38850331 -138123809 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 232 178 206 0 chrX 38850375 38850448 -138123692 - MER94 DNA DNA -42 92 5 398 327 131 19 chrX 38850454 38850668 -138123472 + MIR SINE MIR 15 252 -10 514 165 11 0 chrX 38850904 38850995 -138123145 + MLT2B2 LTR ERVL 1 92 -423 * 706 228 54 0 chrX 38850994 38851143 -138122997 + MLT1E1 LTR MaLR 498 654 0 246 136 0 0 chrX 38851676 38851720 -138122420 + (TG)n Simple_repeat Simple_repeat 2 45 0 474 272 136 0 chrX 38852964 38853155 -138120985 + MIR SINE MIR 45 261 -1 272 309 55 36 chrX 38854185 38854350 -138119790 + MIR SINE MIR 46 213 -49 209 344 69 23 chrX 38854816 38854947 -138119193 - L2 LINE L2 0 3272 3136 745 255 62 94 chrX 38854949 38855634 -138118506 - L2 LINE L2 0 3313 2635 291 221 168 11 chrX 38856395 38856490 -138117650 - MIR SINE MIR -100 162 53 182 250 0 19 chrX 38857087 38857139 -138117001 + MIR SINE MIR 32 82 -180 539 221 55 180 chrX 38857926 38858432 -138115708 - MLT1H LTR MaLR -5 544 102 2461 164 73 0 chrX 38858639 38859036 -138115104 - MSTA LTR MaLR -2 426 1 1833 86 4 31 chrX 38859526 38859801 -138114339 + AluSg SINE Alu 35 302 0 209 186 0 0 chrX 38861731 38861774 -138112366 + G-rich Low_complexity Low_complexity 1 43 0 2328 65 41 0 chrX 38863023 38863313 -138110827 + AluSg SINE Alu 1 302 -8 263 367 33 8 chrX 38863837 38863957 -138110183 + L2 LINE L2 3107 3229 -43 227 150 0 0 chrX 38864140 38864180 -138109960 + L2 LINE L2 3274 3313 0 202 418 25 0 chrX 38864463 38864585 -138109555 + L2 LINE L2 3136 3260 -12 1881 201 99 48 chrX 38864755 38864804 -138109336 + L1MC5 LINE L1 7249 7294 -667 596 218 100 0 chrX 38864804 38864914 -138109226 + FLAM_A SINE Alu 1 121 -12 1881 201 99 48 chrX 38864914 38865511 -138108629 + L1MC5 LINE L1 7294 7928 -33 2597 48 0 0 chrX 38866499 38866794 -138107346 - AluY SINE Alu -16 295 1 305 282 0 0 chrX 38866920 38867005 -138107135 + MIR SINE MIR 80 164 -98 1709 182 4 0 chrX 38867068 38867348 -138106792 - AluJo SINE Alu -31 281 1 2811 208 37 0 chrX 38867982 38868496 -138105644 - REP3 LTR ERV -29 533 1 1943 204 41 24 chrX 38868553 38868964 -138105176 - LTR52 LTR ERVL -3 418 1 5908 239 42 9 chrX 38868964 38870226 -138103914 - LTR52-int LTR ERVL 0 3556 2253 3736 202 19 47 chrX 38870245 38871165 -138102975 - LTR52-int LTR ERVL -1417 2139 1318 1349 217 30 30 chrX 38871173 38871505 -138102635 - MLT2D LTR ERVL 0 414 83 677 200 97 6 chrX 38871505 38871527 -138102613 - Ricksha DNA DNA -2871 375 338 17059 162 101 75 chrX 38871527 38872877 -138101263 - ERVL-D LTR ERVL 0 5764 4449 2391 109 78 62 chrX 38872877 38873298 -138100842 + MSTC LTR MaLR 1 428 0 17059 162 101 75 chrX 38873298 38874051 -138100089 - ERVL-D LTR ERVL -1315 4449 3716 231 61 0 0 chrX 38874051 38874084 -138100056 + (CA)n Simple_repeat Simple_repeat 2 34 0 17059 162 101 75 chrX 38874084 38874351 -138099789 - ERVL-D LTR ERVL -2048 3716 3457 2238 139 73 14 chrX 38874351 38874695 -138099445 - THE1B LTR MaLR 0 364 1 17059 162 101 75 chrX 38874695 38874801 -138099339 - ERVL-D LTR ERVL -2307 3457 3355 802 206 67 31 chrX 38874801 38875024 -138099116 - L1MA9 LINE L1 -87 6225 5995 17059 162 101 75 chrX 38875024 38875723 -138098417 - ERVL-D LTR ERVL -2409 3355 2675 2487 104 44 14 chrX 38875723 38876087 -138098053 - THE1C LTR MaLR 0 375 1 17059 162 101 75 chrX 38876087 38876674 -138097466 - ERVL-D LTR ERVL -3089 2675 1676 508 186 0 0 chrX 38876674 38876760 -138097380 - MLT1A2 LTR MaLR 0 374 289 297 350 55 21 chrX 38877845 38878136 -138096004 - HERVL40 LTR ERVL -1596 3934 3634 1354 183 60 65 chrX 38878941 38879308 -138094832 + MLT1A1 LTR MaLR 1 365 0 2211 106 66 23 chrX 38879519 38879868 -138094272 - THE1B LTR MaLR 0 364 1 2070 169 119 28 chrX 38880329 38880792 -138093348 - MLT1D LTR MaLR 0 505 1 387 213 62 0 chrX 38882521 38882601 -138091539 - HERVL40 LTR ERVL -3337 2193 2109 2787 213 43 0 chrX 38883348 38883884 -138090256 - REP3 LTR ERV 0 562 4 24 0 0 0 chrX 38884523 38884547 -138089593 + AT_rich Low_complexity Low_complexity 1 24 0 32 26 0 0 chrX 38884577 38884616 -138089524 + AT_rich Low_complexity Low_complexity 1 39 0 7254 45 5 0 chrX 38885196 38886230 -138087910 + L1PA6 LINE L1 5106 6143 -11 2812 150 26 19 chrX 38886374 38886915 -138087225 - LTR24B LTR ERV1 -9 567 23 311 279 0 19 chrX 38887027 38887131 -138087009 - LTR24B-int LTR ERV1 -15 5108 5007 970 326 37 31 chrX 38887513 38888181 -138085959 - HERVR LTR ERV1 -437 6685 6014 282 368 7 0 chrX 38888421 38888557 -138085583 - HERVR LTR ERV1 -1353 5769 5633 24321 132 8 28 chrX 38888951 38890554 -138083586 + L1PA8A LINE L1 2 1636 -4810 2211 76 7 30 chrX 38890554 38890855 -138083285 + AluY SINE Alu 1 294 -17 24321 132 8 28 chrX 38890855 38895766 -138078374 + L1PA8A LINE L1 1636 6443 -3 17752 155 45 19 chrX 38895775 38903274 -138070866 + L1MA1 LINE L1 16 7714 -7 535 334 24 29 chrX 38903465 38903878 -138070262 - HERVR LTR ERV1 -2090 2557 2147 292 267 67 47 chrX 38904519 38904669 -138069471 - HERVR LTR ERV1 -3175 4217 4065 4653 209 38 28 chrX 38906420 38907808 -138066332 + L1MB2 LINE L1 2985 4386 -1760 21 57 0 0 chrX 38907813 38907848 -138066292 + AT_rich Low_complexity Low_complexity 1 35 0 1664 175 49 80 chrX 38907867 38908106 -138066034 + L1MB2 LINE L1 4899 5144 -1027 1809 61 0 0 chrX 38908106 38908319 -138065821 + AluY SINE Alu 1 213 -98 1664 175 49 80 chrX 38908319 38908879 -138065261 + L1MB2 LINE L1 5144 5668 -503 1385 158 36 39 chrX 38908926 38909256 -138064884 + L1MA9 LINE L1 5950 6278 -34 2752 145 32 4 chrX 38909260 38909764 -138064376 + L1MB2 LINE L1 5652 6169 -2 7009 201 9 14 chrX 38909867 38911572 -138062568 + L1 LINE L1 3620 5316 -830 4518 108 46 8 chrX 38911571 38912309 -138061831 + L1PA16 LINE L1 5392 6157 -9 * 4132 174 12 27 chrX 38912363 38913123 -138061017 - L1MA4 LINE L1 -11 6289 5519 1913 157 21 26 chrX 38913123 38913500 -138060640 - THE1C LTR MaLR 0 375 1 9947 118 40 9 chrX 38913508 38915038 -138059102 - THE1C-int LTR MaLR -2 1578 1 1955 119 32 37 chrX 38915038 38915415 -138058725 - THE1C LTR MaLR 0 375 1 4132 174 12 27 chrX 38915415 38915487 -138058653 - L1MA4 LINE L1 -786 5514 5460 5597 119 20 1 chrX 38915487 38917079 -138057061 + L1PA13 LINE L1 4554 6162 -1 261 105 0 0 chrX 38917079 38917117 -138057023 - L1MA4 LINE L1 -825 5475 5438 * 10204 153 47 10 chrX 38917115 38920340 -138053800 + L1MA3 LINE L1 2957 6305 0 226 315 96 0 chrX 38921357 38921430 -138052710 + L2 LINE L2 3107 3186 -86 190 264 42 28 chrX 38921564 38921636 -138052504 + MIR SINE MIR 32 104 -158 550 311 33 16 chrX 38921683 38921931 -138052209 + MIR SINE MIR 8 262 0 180 254 30 30 chrX 38921937 38922004 -138052136 + MIR SINE MIR 136 202 -60 2025 119 10 14 chrX 38922148 38922443 -138051697 + AluSq SINE Alu 1 294 -19 184 304 0 114 chrX 38922517 38922596 -138051544 + MIR SINE MIR 7 76 -186 536 253 7 14 chrX 38922783 38922929 -138051211 + MIR SINE MIR 24 168 -94 214 290 110 30 chrX 38923291 38923391 -138050749 + L2 LINE L2 3122 3229 -43 197 65 32 0 chrX 38923462 38923493 -138050647 + (TA)n Simple_repeat Simple_repeat 2 33 0 195 266 55 73 chrX 38923555 38923664 -138050476 - MIR SINE MIR -111 151 45 281 200 0 0 chrX 38924696 38924756 -138049384 - L1MCb LINE L1 -5768 277 218 434 229 72 54 chrX 38924761 38924927 -138049213 - L1MCb LINE L1 -6239 325 157 277 278 15 78 chrX 38924959 38925164 -138048976 + HAL1 LINE L1 2315 2506 -1 345 268 62 0 chrX 38925442 38925539 -138048601 - MIR SINE MIR -99 163 61 30 27 0 0 chrX 38925865 38925902 -138048238 + AT_rich Low_complexity Low_complexity 1 37 0 327 266 114 6 chrX 38926002 38926160 -138047980 + L1M4 LINE L1 3762 3936 -2210 631 273 214 0 chrX 38926224 38926499 -138047641 - MER46C DNA MER2_type -4 334 1 1677 243 35 23 chrX 38926551 38927073 -138047067 - L1ME3A LINE L1 -3 6167 5640 1486 222 127 23 chrX 38927074 38927666 -138046474 + MLT1E3 LTR MaLR 1 615 -9 658 201 20 20 chrX 38927674 38927823 -138046317 + MLT1E3-int LTR MaLR 1 149 -1222 787 231 33 96 chrX 38927828 38928191 -138045949 + MLT1E3-int LTR MaLR 1032 1371 0 795 229 171 24 chrX 38928191 38928738 -138045402 + MLT1E3 LTR MaLR 1 654 0 759 262 95 5 chrX 38928740 38929053 -138045087 - L1ME3A LINE L1 -536 5634 5296 1069 247 84 58 chrX 38929114 38929992 -138044148 - L1ME3A LINE L1 -1011 5135 4235 305 303 55 12 chrX 38929999 38930164 -138043976 - MLT1L LTR MaLR -302 313 142 1868 140 20 17 chrX 38930356 38930648 -138043492 + AluSx SINE Alu 1 293 -19 1933 119 32 0 chrX 38930648 38930926 -138043214 + AluSx SINE Alu 17 303 -9 856 240 53 0 chrX 38931168 38931376 -138042764 - MER20 DNA MER1_type 0 219 1 395 299 78 30 chrX 38931564 38931795 -138042345 - L1ME LINE L1 -367 5754 5513 239 268 116 51 chrX 38932329 38932467 -138041673 + L2 LINE L2 2338 2484 -830 608 234 14 7 chrX 38932471 38932616 -138041524 + MLT1G LTR MaLR 410 555 -35 273 216 10 98 chrX 38932797 38932991 -138041149 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 * 345 172 15 121 chrX 38932973 38933171 -138040969 + (CATTC)n Simple_repeat Simple_repeat 3 179 0 2231 93 0 7 chrX 38933302 38933603 -138040537 + AluSx SINE Alu 1 299 -13 453 304 78 23 chrX 38933614 38933871 -138040269 + L1ME4a LINE L1 5589 5859 -262 22 0 0 0 chrX 38933927 38933949 -138040191 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 38934645 38934677 -138039463 + (CA)n Simple_repeat Simple_repeat 2 33 0 378 265 60 150 chrX 38935353 38936058 -138038082 + L1M2 LINE L1 770 1410 -5439 233 304 147 45 chrX 38937779 38938003 -138036137 + MER115 DNA AcHobo 13 259 -434 382 264 16 47 chrX 38938114 38938243 -138035897 - MIR SINE MIR -82 180 56 * 721 300 30 8 chrX 38938217 38938454 -138035686 + MIR SINE MIR 21 262 0 550 277 25 6 chrX 38938894 38939053 -138035087 - MIR SINE MIR -1 261 100 675 204 127 0 chrX 38939673 38939830 -138034310 + MER45A DNA AcHobo 1 177 -1 497 273 28 14 chrX 38939953 38940096 -138034044 + MIR SINE MIR 24 168 -94 213 259 0 35 chrX 38940648 38940706 -138033434 + L2 LINE L2 3255 3310 -3 403 302 29 7 chrX 38941018 38941157 -138032983 + L2 LINE L2 3172 3313 0 242 197 26 0 chrX 38941448 38941571 -138032569 + CT-rich Low_complexity Low_complexity 1 126 0 2158 200 84 48 chrX 38941598 38941931 -138032209 - L1ME LINE L1 -370 5796 5477 3305 37 2 7 chrX 38941931 38942334 -138031806 + L1PA6 LINE L1 5749 6149 -5 2158 200 84 48 chrX 38942334 38942397 -138031743 - L1ME LINE L1 -689 5477 5418 309 26 0 0 chrX 38942397 38942435 -138031705 + (TG)n Simple_repeat Simple_repeat 2 39 0 1992 111 21 4 chrX 38942435 38942714 -138031426 - AluSx SINE Alu -28 284 1 2158 200 84 48 chrX 38942714 38943465 -138030675 - L1ME LINE L1 -747 5419 4601 * 2358 239 31 38 chrX 38943462 38944288 -138029852 - L1ME1 LINE L1 -5 6161 5341 2938 122 39 4 chrX 38944288 38944746 -138029394 + MER101 LTR ERV1 1 474 0 640 237 14 28 chrX 38945178 38945393 -138028747 - LTR4 LTR ERV1 0 596 385 1802 208 44 40 chrX 38946451 38947155 -138026985 + LTR43-int LTR ERV1 1199 3120 -3211 1021 187 37 79 chrX 38947369 38947957 -138026183 + LTR43-int LTR ERV1 1563 3646 -2685 822 150 20 45 chrX 38948092 38948292 -138025848 + LTR43-int LTR ERV1 3536 3730 -2868 506 155 0 21 chrX 38948424 38948521 -138025619 - LTR1 LTR ERV1 -690 95 1 1334 245 66 12 chrX 38948834 38949286 -138024854 + LTR43-int LTR ERV1 346 862 -3936 3612 190 23 26 chrX 38949287 38950025 -138024115 + LTR43-int LTR ERV1 4063 4798 0 4442 88 3 5 chrX 38950025 38950628 -138023512 + LTR43 LTR ERV1 1 602 0 857 163 163 51 chrX 38951370 38951566 -138022574 + MER20 DNA MER1_type 2 219 0 2725 213 81 23 chrX 38951807 38952599 -138021541 + L1ME1 LINE L1 5325 6162 -4 5672 141 14 2 chrX 38952679 38953670 -138020470 - L1MA4 LINE L1 -1 6299 5297 985 201 5 0 chrX 38953667 38953871 -138020269 - L1MA4 LINE L1 -2475 3671 3467 * 506 253 124 11 chrX 38955066 38955229 -138018911 + MER5A DNA MER1_type 4 187 -2 42476 35 2 1 chrX 38955433 38961584 -138012556 - L1PA3 LINE L1 0 6155 2 296 332 181 19 chrX 38961808 38962013 -138012127 - MIR SINE MIR -17 245 8 1366 172 95 37 chrX 38962199 38962390 -138011750 - L1MD2 LINE L1 -10 6349 6170 225 0 0 0 chrX 38962390 38962415 -138011725 + (TG)n Simple_repeat Simple_repeat 2 26 0 1366 172 95 37 chrX 38962415 38962511 -138011629 - L1MD2 LINE L1 -189 6170 6081 2167 66 0 76 chrX 38962511 38962842 -138011298 - AluSc SINE Alu 0 308 1 1366 172 95 37 chrX 38962842 38962900 -138011240 - L1MD2 LINE L1 -278 6081 5982 781 152 0 7 chrX 38962928 38963066 -138011074 - L1MD2 LINE L1 -652 5707 5571 554 276 52 17 chrX 38963753 38963927 -138010213 - MIR SINE MIR -14 248 69 433 322 101 5 chrX 38963917 38964125 -138010015 + MIR SINE MIR 23 250 -12 * 1322 155 54 0 chrX 38964862 38965120 -138009020 - Charlie1 DNA MER1_type -401 2360 2089 216 211 123 0 chrX 38965122 38965179 -138008961 + MIR SINE MIR 90 153 -109 387 0 0 0 chrX 38965685 38965728 -138008412 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 229 326 23 12 chrX 38965914 38966000 -138008140 - MIR SINE MIR -4 258 172 324 322 60 38 chrX 38966258 38966441 -138007699 + MIR SINE MIR 25 211 -51 315 71 0 0 chrX 38966468 38966510 -138007630 + (TA)n Simple_repeat Simple_repeat 1 42 0 362 308 137 24 chrX 38966639 38966850 -138007290 + L1M4 LINE L1 14 248 -6294 567 193 86 0 chrX 38967008 38967148 -138006992 + L1 LINE L1 3568 3719 -2427 2723 133 5 0 chrX 38967149 38967569 -138006571 - MSTB1 LTR MaLR 0 432 11 2289 221 33 46 chrX 38967570 38968294 -138005846 + L1 LINE L1 3731 4445 -1701 2517 150 9 30 chrX 38968302 38968763 -138005377 + L1M1 LINE L1 22 472 -7093 1478 170 0 15 chrX 38968763 38969028 -138005112 + MLT1A1 LTR MaLR 105 365 0 2534 184 4 2 chrX 38969029 38969507 -138004633 + MLT1A1-int LTR MaLR 2 480 -1255 3611 217 62 72 chrX 38969516 38970655 -138003485 + MLT1A1-int LTR MaLR 609 1735 0 1565 177 116 3 chrX 38970655 38970983 -138003157 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 38971452 38971474 -138002666 + AT_rich Low_complexity Low_complexity 1 22 0 2015 243 31 9 chrX 38972252 38972918 -138001222 + L1M4 LINE L1 3481 4161 -1985 202 224 0 0 chrX 38972919 38972968 -138001172 + A-rich Low_complexity Low_complexity 1 49 0 288 167 0 0 chrX 38973031 38973085 -138001055 - L1PB4 LINE L1 -3 6153 6100 2483 132 41 19 chrX 38973086 38973503 -138000637 - MSTB LTR MaLR 0 426 1 2576 151 46 0 chrX 38973503 38973940 -138000200 - L1PB4 LINE L1 -104 6052 5596 10217 167 15 12 chrX 38973989 38975711 -137998429 - L1M1 LINE L1 -5837 1728 1 3665 233 58 13 chrX 38975698 38976566 -137997574 - L1M1 LINE L1 -6640 925 19 * 11462 157 29 6 chrX 38976608 38978420 -137995720 + ERVL LTR ERVL 717 2569 -3195 754 221 25 12 chrX 38978420 38978583 -137995557 + MLT2B3 LTR ERVL 390 554 0 470 179 11 11 chrX 38978586 38978681 -137995459 - L1M4 LINE L1 -1194 5021 4927 * 4065 263 58 24 chrX 38978673 38980570 -137993570 - L1MEc LINE L1 -2517 3698 1772 319 317 39 39 chrX 38980604 38980721 -137993419 - L1M4c LINE L1 -4415 2723 2607 2391 88 7 0 chrX 38980721 38981017 -137993123 - AluSc SINE Alu -11 298 1 319 317 39 39 chrX 38981017 38981180 -137992960 - L1M4c LINE L1 -4530 2608 2293 1358 201 49 4 chrX 38981213 38981476 -137992664 - MLT1D LTR MaLR 0 505 231 399 143 16 0 chrX 38981476 38981539 -137992601 - MLT1D LTR MaLR -441 64 1 754 217 52 48 chrX 38981541 38981790 -137992350 - L1M4c LINE L1 -4681 2278 2029 653 158 73 12 chrX 38981785 38981949 -137992191 - L1M4c LINE L1 -5040 1815 1642 * 5255 71 18 10 chrX 38981959 38982631 -137991509 + L1PA13 LINE L1 5484 6160 -3 4854 131 44 40 chrX 38982871 38983718 -137990422 - MER4D LTR ERV1 -2 901 52 267 154 125 67 chrX 38983735 38983839 -137990301 - L1M4c LINE L1 -5096 1759 1650 2341 104 0 0 chrX 38983839 38984136 -137990004 + AluSx SINE Alu 1 297 -15 3257 181 52 11 chrX 38984140 38984752 -137989388 + LTR9B LTR ERV1 8 644 0 412 122 122 67 chrX 38984752 38984842 -137989298 + HUERS-P3 LTR ERV1 1 95 -7323 * 799 127 23 11 chrX 38984829 38984965 -137989175 + HUERS-P3 LTR ERV1 411 529 -6889 8402 153 16 17 chrX 38984969 38987188 -137986952 + HUERS-P3 LTR ERV1 764 3284 -5314 599 232 152 0 chrX 38987181 38987306 -137986834 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 4514 121 30 8 chrX 38987307 38987969 -137986171 + HUERS-P3 LTR ERV1 4901 5577 -3342 * 4778 169 6 11 chrX 38987936 38988719 -137985421 + HUERS-P3 LTR ERV1 6143 6921 -1998 476 204 0 11 chrX 38988726 38988819 -137985321 + HUERS-P3 LTR ERV1 6854 6945 -473 835 165 16 36 chrX 38988822 38989016 -137985124 + HUERS-P3 LTR ERV1 2383 2572 -2443 1312 179 19 17 chrX 38989294 38989556 -137984584 + HUERS-P3 LTR ERV1 7163 8918 -1 3340 152 68 20 chrX 38989558 38990164 -137983976 + LTR9B LTR ERV1 10 644 0 1497 220 70 34 chrX 38990164 38990463 -137983677 - L1M4c LINE L1 -5194 1665 1343 6048 24 9 1 chrX 38990463 38991126 -137983014 + L1PA4 LINE L1 5483 6150 -5 1497 220 70 34 chrX 38991126 38991271 -137982869 - L1M4c LINE L1 -5516 1343 1205 476 262 136 52 chrX 38991483 38991645 -137982495 - L1M4c LINE L1 -5642 1217 1070 2486 168 54 2 chrX 38991645 38992050 -137982090 - MSTB LTR MaLR 0 426 1 476 262 136 52 chrX 38992050 38992191 -137981949 - L1M4c LINE L1 -5789 1070 649 634 242 6 30 chrX 38992256 38992421 -137981719 + MER67C LTR ERV1 1 161 -549 1484 172 151 32 chrX 38992426 38992863 -137981277 + LTR54B LTR ERV1 8 496 -2 * 3005 152 60 11 chrX 38992863 38993386 -137980754 + MER67C LTR ERV1 162 710 0 620 236 146 6 chrX 38993569 38993747 -137980393 - L1M4c LINE L1 -6646 213 11 291 169 17 0 chrX 38993752 38993811 -137980329 + L1MD3 LINE L1 7928 7987 -8 333 333 41 0 chrX 38993814 38993937 -137980203 - L2 LINE L2 -12 3260 3133 2328 48 0 0 chrX 38994317 38994586 -137979554 - AluSc SINE Alu -8 301 33 284 308 47 37 chrX 38994858 38994965 -137979175 - L2 LINE L2 -40 3232 3125 471 258 19 45 chrX 38995086 38995241 -137978899 - MIR SINE MIR -77 185 35 1819 160 7 3 chrX 38995747 38996035 -137978105 - AluJo SINE Alu -23 289 1 5283 36 3 0 chrX 38996042 38996626 -137977514 + L1PA5 LINE L1 5566 6151 -3 255 61 0 0 chrX 38996826 38996859 -137977281 + (TG)n Simple_repeat Simple_repeat 2 34 0 341 274 94 9 chrX 38996904 38997010 -137977130 + MIR SINE MIR 92 206 -56 295 333 106 16 chrX 38997227 38997350 -137976790 - L2 LINE L2 -40 3232 3099 217 316 0 0 chrX 38997840 38997897 -137976243 + MIR SINE MIR 48 104 -158 680 300 70 12 chrX 38997959 38998202 -137975938 + MIR SINE MIR 1 257 -5 546 371 51 30 chrX 38998965 38999591 -137974549 + L2 LINE L2 1253 1891 -1423 26 0 0 0 chrX 38999798 38999824 -137974316 + AT_rich Low_complexity Low_complexity 1 26 0 4293 193 23 16 chrX 38999824 39000720 -137973420 - L1MB8 LINE L1 -21 6968 6066 1520 204 90 6 chrX 39000726 39001237 -137972903 - L1MB8 LINE L1 -2922 4035 3424 2016 289 68 58 chrX 39001238 39002065 -137972075 - L1MB8 LINE L1 -5997 862 28 4130 140 22 2 chrX 39002070 39002669 -137971471 - LTR36 LTR ERV1 0 611 1 603 354 32 59 chrX 39002709 39003150 -137970990 - LTR36-int LTR ERV1 -73 7049 6621 368 177 32 0 chrX 39003169 39003241 -137970899 - MER49 LTR ERV1 -165 752 488 991 149 85 64 chrX 39003253 39003488 -137970652 - LTR36-int LTR ERV1 -178 6153 5914 10689 139 28 51 chrX 39003541 39007036 -137967104 - LTR36-int LTR ERV1 -529 5417 1634 478 129 35 65 chrX 39007025 39007180 -137966960 - LTR36-int LTR ERV1 -2530 4068 1731 * 6610 55 6 72 chrX 39007180 39008065 -137966075 + LTR12 LTR ERV1 1 826 0 22988 89 6 13 chrX 39008065 39011317 -137962823 + HERV9 LTR ERV1 40 714 0 2363 142 70 2 chrX 39011338 39011781 -137962359 - LTR36-int LTR ERV1 -6461 1659 1187 917 161 35 43 chrX 39011774 39012088 -137962052 - LTR36-int LTR ERV1 -476 1926 1076 * 521 250 8 31 chrX 39012169 39012297 -137961843 - LTR36-int LTR ERV1 -2738 1547 1423 653 290 29 25 chrX 39012611 39012856 -137961284 - LTR36-int LTR ERV1 -1422 364 119 4200 120 26 25 chrX 39012932 39013542 -137960598 - LTR36 LTR ERV1 0 611 1 413 342 44 0 chrX 39013583 39013811 -137960329 + L2 LINE L2 2146 2383 -931 538 100 0 0 chrX 39013815 39013885 -137960255 - LTR36 LTR ERV1 -103 508 439 239 236 18 45 chrX 39013905 39014015 -137960125 + L2 LINE L2 2401 2507 -807 1018 185 0 0 chrX 39014047 39014204 -137959936 - FRAM SINE Alu -20 156 1 303 312 43 0 chrX 39014207 39014300 -137959840 + L2 LINE L2 2533 2629 -685 485 356 31 62 chrX 39014453 39014841 -137959299 + L2 LINE L2 2856 3231 -41 504 216 43 36 chrX 39015132 39015271 -137958869 - L1MA9 LINE L1 -30 6282 6143 2318 56 38 0 chrX 39015274 39015562 -137958578 - AluY SINE Alu -12 299 1 322 296 43 9 chrX 39015606 39015721 -137958419 + MIR SINE MIR 45 163 -99 227 377 70 0 chrX 39017014 39017128 -137957012 - MER91A DNA MER1_type -74 122 1 304 226 73 79 chrX 39017251 39017360 -137956780 + L1ME4a LINE L1 5944 6053 -68 1560 109 50 0 chrX 39017360 39017598 -137956542 - L1MA3 LINE L1 0 6305 6056 304 226 73 79 chrX 39017598 39017665 -137956475 + L1ME4a LINE L1 6053 6119 -2 1110 174 40 25 chrX 39018005 39018280 -137955860 - L1MC5 LINE L1 -35 7926 7648 21 36 0 0 chrX 39018959 39018987 -137955153 + AT_rich Low_complexity Low_complexity 1 28 0 298 192 110 0 chrX 39018987 39019060 -137955080 - MER113 DNA MER1_type? -274 247 167 243 377 39 8 chrX 39019356 39019486 -137954654 - L2 LINE L2 0 3272 3139 193 300 83 0 chrX 39020128 39020188 -137953952 - L2 LINE L2 -220 3093 3029 1854 118 33 59 chrX 39020353 39020658 -137953482 - AluSx SINE Alu -15 297 1 564 138 53 0 chrX 39022105 39022199 -137951941 + L1PA13 LINE L1 6060 6158 -5 183 80 0 0 chrX 39024481 39024506 -137949634 + (CCG)n Simple_repeat Simple_repeat 1 25 0 215 91 91 0 chrX 39025584 39025628 -137948512 + T-rich Low_complexity Low_complexity 2 49 0 1373 7 0 0 chrX 39025643 39025788 -137948352 - L1PA3 LINE L1 -1 6154 6010 6497 19 0 0 chrX 39025788 39026776 -137947364 + L1PA3 LINE L1 4999 5986 -169 2389 78 3 0 chrX 39027436 39027743 -137946397 + AluSp SINE Alu 1 308 -5 243 287 23 47 chrX 39027804 39027933 -137946207 + L1M4 LINE L1 4038 4163 -1983 28 29 0 0 chrX 39028033 39028068 -137946072 + AT_rich Low_complexity Low_complexity 1 35 0 2595 149 73 0 chrX 39028624 39029021 -137945119 + MSTA LTR MaLR 1 426 -2 562 247 53 149 chrX 39029247 39029717 -137944423 + MLT1H LTR MaLR 118 542 -7 226 261 97 45 chrX 39029862 39029996 -137944144 - MIR SINE MIR -4 258 118 312 250 110 10 chrX 39031163 39031263 -137942877 + MIR SINE MIR 53 162 -100 749 257 57 79 chrX 39032093 39032695 -137941445 + L2 LINE L2 2737 3313 0 195 351 69 23 chrX 39032697 39032828 -137941312 + L2 LINE L2 3136 3272 0 180 358 49 0 chrX 39032947 39033028 -137941112 + L2 LINE L2 3155 3239 -33 346 311 60 27 chrX 39033252 39033435 -137940705 - MIR SINE MIR -28 234 46 476 256 66 29 chrX 39034472 39034684 -137939456 - MIR SINE MIR -32 230 12 2123 97 10 24 chrX 39035222 39035520 -137938620 + AluSq SINE Alu 1 294 -19 260 213 0 0 chrX 39036186 39036247 -137937893 - MER4-int LTR ERV1 -5423 1175 1115 836 180 53 0 chrX 39036780 39036930 -137937210 - MLT1E1 LTR MaLR 0 654 497 472 161 11 0 chrX 39036932 39037019 -137937121 - MLT2B2 LTR ERVL -427 88 1 507 277 98 36 chrX 39037264 39037488 -137936652 - MIR SINE MIR -10 252 15 693 269 32 50 chrX 39037708 39037990 -137936150 + L2 LINE L2 1628 1904 -1410 6706 56 5 1 chrX 39037991 39038832 -137935308 + L1P LINE L1 1938 2781 -3365 2165 296 108 24 chrX 39038835 39038907 -137935233 + L2 LINE L2 1909 1974 -1339 2335 101 0 0 chrX 39038907 39039204 -137934936 + AluSq SINE Alu 1 297 -16 2165 296 108 24 chrX 39039204 39040216 -137933924 + L2 LINE L2 1974 3067 -246 198 128 0 0 chrX 39040235 39040274 -137933866 + (T)n Simple_repeat Simple_repeat 1 39 0 42457 45 22 1 chrX 39040297 39046325 -137927815 - L1PA3 LINE L1 0 6155 1 411 322 10 34 chrX 39046344 39046552 -137927588 + L2 LINE L2 3097 3299 -14 234 214 165 19 chrX 39046805 39046908 -137927232 - MLT1L LTR MaLR -349 266 149 429 54 0 0 chrX 39046986 39047042 -137927098 + (TG)n Simple_repeat Simple_repeat 1 56 0 328 318 23 69 chrX 39047456 39047629 -137926511 - L1ME3A LINE L1 -37 6133 5969 215 383 42 8 chrX 39047857 39047977 -137926163 - L2 LINE L2 -11 3261 3138 269 298 39 29 chrX 39048064 39048168 -137925972 + MIR3 SINE MIR 68 172 -36 300 365 46 30 chrX 39048592 39048789 -137925351 - MIR SINE MIR 0 262 63 2338 190 54 134 chrX 39048845 39049811 -137924329 - L1MC4 LINE L1 -1 8041 7160 3118 163 39 19 chrX 39049811 39050259 -137923881 - L1MA8 LINE L1 -3 6288 5824 1647 205 3 0 chrX 39050259 39050556 -137923584 - AluJb SINE Alu -12 300 3 3118 163 39 19 chrX 39050556 39050695 -137923445 - L1MA8 LINE L1 -467 5824 5689 2338 190 54 134 chrX 39050695 39050753 -137923387 - L1MC4 LINE L1 -882 7160 7099 2015 176 35 29 chrX 39050755 39051306 -137922834 - MLT2A2 LTR ERVL 0 554 1 1185 234 29 3 chrX 39051326 39051634 -137922506 - L1MC4 LINE L1 -953 7089 6774 192 287 35 92 chrX 39051647 39051775 -137922365 + MIR SINE MIR 67 184 -78 2282 102 3 9 chrX 39051775 39052090 -137922050 + AluSq SINE Alu 1 313 0 192 287 35 92 chrX 39052090 39052135 -137922005 + MIR SINE MIR 184 230 -32 304 198 42 62 chrX 39052154 39052250 -137921890 + L1MC4 LINE L1 6984 7077 -965 427 271 123 0 chrX 39052576 39052698 -137921442 + L2 LINE L2 3136 3272 0 245 254 0 0 chrX 39052741 39052796 -137921344 - MIR SINE MIR -73 135 81 2246 102 0 13 chrX 39052796 39053100 -137921040 - AluSq SINE Alu -13 300 1 396 290 61 8 chrX 39053307 39053438 -137920702 - L2 LINE L2 -4 3309 3172 206 274 0 0 chrX 39053657 39053708 -137920432 + MIR SINE MIR 97 147 -115 192 312 91 0 chrX 39053795 39053872 -137920268 - MIR SINE MIR 0 262 179 37 93 0 0 chrX 39054093 39054200 -137919940 + AT_rich Low_complexity Low_complexity 1 107 0 1518 154 4 0 chrX 39054271 39054518 -137919622 - L1MA6 LINE L1 0 6300 6053 5719 230 26 12 chrX 39054520 39056040 -137918100 + L1 LINE L1 2581 4122 -2024 380 219 16 0 chrX 39056040 39056104 -137918036 + MER2 DNA MER2_type 1 65 -280 42619 63 4 2 chrX 39056248 39061993 -137912147 - L1P2 LINE L1 -397 5758 1 888 192 110 63 chrX 39062024 39062279 -137911861 + MER66B LTR ERV1 220 486 0 412 299 66 14 chrX 39062283 39062567 -137911573 + L1MC5 LINE L1 7215 7415 -393 333 284 14 33 chrX 39062601 39062812 -137911328 + L1MC5 LINE L1 7509 7715 -246 * 5414 169 22 14 chrX 39062802 39063136 -137911004 + L1PB4 LINE L1 4220 4550 -1606 2289 108 3 0 chrX 39063136 39063612 -137910528 + AluSp SINE Alu 6 482 0 5414 169 22 14 chrX 39063612 39065200 -137908940 + L1PB4 LINE L1 4550 6156 0 212 256 0 0 chrX 39066461 39066504 -137907636 + polypurine Low_complexity Low_complexity 5 47 0 334 357 32 36 chrX 39066588 39066868 -137907272 - L2 LINE L2 -470 2844 2566 2255 78 7 3 chrX 39066889 39067203 -137906937 + AluSp SINE Alu 1 315 0 2010 175 116 16 chrX 39067210 39067695 -137906445 + L1MA9 LINE L1 4432 4964 -1182 * 2185 172 103 74 chrX 39067669 39068279 -137905861 + L1MA9 LINE L1 5651 6278 -34 23 0 0 0 chrX 39068348 39068371 -137905769 + AT_rich Low_complexity Low_complexity 1 23 0 2330 78 3 3 chrX 39068529 39068825 -137905315 + AluSp SINE Alu 1 296 -17 266 192 96 0 chrX 39069028 39069080 -137905060 - L2 LINE L2 -3 3310 3254 317 226 0 0 chrX 39069274 39069336 -137904804 - MIR SINE MIR -92 170 109 2157 166 78 14 chrX 39069442 39069875 -137904265 - L1MC2 LINE L1 0 6344 5884 2172 120 0 7 chrX 39069877 39070186 -137903954 - AluSc SINE Alu -2 307 1 344 22 22 0 chrX 39070199 39070244 -137903896 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 39798 42 23 2 chrX 39070244 39076253 -137897887 - L1PA3 LINE L1 -13 6142 2 7486 249 70 34 chrX 39076246 39076404 -137897736 - L1MC2 LINE L1 -445 5899 5748 * 2318 151 28 35 chrX 39076404 39076507 -137897633 + MSTC LTR MaLR 1 103 -325 1945 173 0 3 chrX 39076507 39076808 -137897332 + AluSg SINE Alu 1 300 -10 2318 151 28 35 chrX 39076808 39077135 -137897005 + MSTC LTR MaLR 103 428 0 7486 249 70 34 chrX 39077135 39079354 -137894786 - L1MC2 LINE L1 -596 5748 3610 7330 35 6 0 chrX 39079354 39081029 -137893111 + L1PA5 LINE L1 4447 6141 -13 7486 249 70 34 chrX 39081029 39082223 -137891917 - L1MC2 LINE L1 -2734 3610 2220 2264 119 0 0 chrX 39082223 39082517 -137891623 - AluSx SINE Alu -18 294 1 7486 249 70 34 chrX 39082517 39082627 -137891513 - L1MC2 LINE L1 -4124 2220 2115 874 153 0 8 chrX 39082638 39082769 -137891371 - AluSq/x SINE Alu -182 130 1 337 274 21 120 chrX 39083010 39083219 -137890921 - MIR SINE MIR -70 192 6 211 229 13 47 chrX 39083308 39083407 -137890733 + L2 LINE L2 2896 2992 -321 2642 121 0 0 chrX 39084065 39084429 -137889711 - THE1B LTR MaLR 0 364 1 233 298 0 0 chrX 39084477 39084534 -137889606 + L2 LINE L2 3257 3313 0 218 378 5 41 chrX 39084577 39084773 -137889367 + L2 LINE L2 1227 1415 -1899 3310 222 64 28 chrX 39084959 39085452 -137888688 - L1ME1 LINE L1 -5 6972 6498 2501 142 42 31 chrX 39085452 39085904 -137888236 - MSTB2 LTR MaLR 0 457 1 3310 222 64 28 chrX 39085904 39087092 -137887048 - L1ME1 LINE L1 -479 6498 5227 2039 141 131 13 chrX 39087092 39087475 -137886665 + MSTA LTR MaLR 1 428 0 3310 222 64 28 chrX 39087475 39087829 -137886311 - L1ME1 LINE L1 -1750 5227 4887 252 0 0 0 chrX 39087832 39087860 -137886280 + (TG)n Simple_repeat Simple_repeat 2 29 0 643 148 31 10 chrX 39087871 39088067 -137886073 + CT-rich Low_complexity Low_complexity 1 200 0 1407 166 102 4 chrX 39088067 39088332 -137885808 - AluJo SINE Alu -13 299 9 572 261 22 14 chrX 39088340 39088562 -137885578 - L1ME1 LINE L1 -2094 4863 4640 807 168 0 29 chrX 39088563 39088700 -137885440 + FLAM_C SINE Alu 1 133 -10 548 262 112 0 chrX 39088758 39088972 -137885168 - L1ME1 LINE L1 -5291 1568 1331 185 62 0 31 chrX 39089013 39089045 -137885095 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 41012 47 6 0 chrX 39089045 39095138 -137879002 - L1PA4 LINE L1 -24 6131 1 320 301 23 102 chrX 39095253 39095469 -137878671 - L1ME1 LINE L1 -5622 1233 1035 335 335 78 23 chrX 39095805 39096023 -137878117 - L1ME1 LINE L1 -6617 242 13 1146 261 88 16 chrX 39096093 39096468 -137877672 - MLT1H LTR MaLR -2 547 146 957 192 80 7 chrX 39096478 39096824 -137877316 - MER61C LTR ERV1 -30 404 1 15772 103 4 4 chrX 39096824 39099411 -137874729 - MER61C-int LTR ERV1 0 5217 2554 2077 143 0 0 chrX 39099412 39099699 -137874441 + AluSx SINE Alu 1 287 -25 251 253 32 0 chrX 39101288 39101383 -137872757 - L1ME LINE L1 -298 5823 5726 1382 80 0 6 chrX 39102660 39102836 -137871304 + AluSg/x SINE Alu 122 296 -16 273 276 61 20 chrX 39103288 39103386 -137870754 - L2 LINE L2 -30 3283 3182 309 261 18 54 chrX 39103446 39103557 -137870583 + MIR SINE MIR 69 175 -87 415 411 44 35 chrX 39104378 39104716 -137869424 - L2 LINE L2 -38 3234 2894 208 349 151 0 chrX 39104754 39104880 -137869260 + L2 LINE L2 3167 3311 -2 1937 211 39 46 chrX 39105547 39106079 -137868061 + MER63C DNA MER1_type 253 830 -231 2432 68 0 3 chrX 39106079 39106386 -137867754 - AluY SINE Alu -5 306 1 1937 211 39 46 chrX 39106386 39106488 -137867652 + MER63C DNA MER1_type 830 931 0 333 206 29 0 chrX 39106879 39106981 -137867159 + GA-rich Low_complexity Low_complexity 1 105 0 241 246 0 43 chrX 39107113 39107182 -137866958 + MIR SINE MIR 176 241 -21 * 529 260 32 19 chrX 39107180 39107334 -137866806 + MIR SINE MIR 33 188 -74 287 305 42 17 chrX 39107722 39107840 -137866300 - MIR SINE MIR -71 191 71 182 437 42 0 chrX 39107932 39108051 -137866089 + L2 LINE L2 3139 3262 -10 423 236 12 103 chrX 39108449 39108614 -137865526 + L2 LINE L2 3162 3311 -2 184 302 69 43 chrX 39108743 39108859 -137865281 + MIR SINE MIR 19 137 -125 546 285 0 33 chrX 39108890 39109041 -137865099 - L2 LINE L2 0 3272 3127 264 292 66 59 chrX 39109620 39109789 -137864351 - MIR SINE MIR -37 171 2 186 245 53 75 chrX 39111163 39111257 -137862883 + L2 LINE L2 3143 3234 -38 32 81 0 0 chrX 39111483 39111557 -137862583 + AT_rich Low_complexity Low_complexity 1 74 0 23 54 0 0 chrX 39111565 39111602 -137862538 + AT_rich Low_complexity Low_complexity 1 37 0 431 261 97 34 chrX 39111615 39111791 -137862349 - MIR SINE MIR -48 214 28 294 235 71 55 chrX 39113075 39113194 -137860946 + MIR SINE MIR 1 112 -96 236 304 0 0 chrX 39113195 39113251 -137860889 - L2 LINE L2 0 3313 3258 * 270 148 98 0 chrX 39113239 39113300 -137860840 + MIR SINE MIR 98 164 -98 211 309 138 32 chrX 39113412 39113535 -137860605 + L2 LINE L2 3137 3272 0 497 281 57 0 chrX 39114403 39114631 -137859509 + MER113 DNA MER1_type? 6 246 -275 502 269 7 7 chrX 39115726 39115867 -137858273 + MLT2F LTR ERVL 1 141 -522 680 219 38 22 chrX 39115871 39116054 -137858086 + MLT1E3 LTR MaLR 46 231 -393 466 249 53 112 chrX 39115887 39116261 -137857879 + MLT2C1 LTR ERVL 44 395 -2 * 2414 77 3 0 chrX 39116330 39116628 -137857512 - AluSg SINE Alu -11 299 1 268 288 45 45 chrX 39117089 39117221 -137856919 - L2 LINE L2 -227 3045 2914 258 297 32 19 chrX 39117733 39117888 -137856252 - L1ME LINE L1 -233 5888 5732 271 247 0 25 chrX 39117899 39117980 -137856160 + L1MC4a LINE L1 5860 5938 -1870 216 109 65 22 chrX 39118776 39118822 -137855318 + GA-rich Low_complexity Low_complexity 1 48 0 646 253 83 75 chrX 39118944 39119102 -137855038 + MIR SINE MIR 1 156 -106 2989 104 9 2 chrX 39119102 39119533 -137854607 + MER57B LTR ERV1 1 434 0 646 253 83 75 chrX 39119533 39119549 -137854591 + MIR SINE MIR 156 170 -92 2263 81 10 0 chrX 39119549 39119844 -137854296 + AluSx SINE Alu 1 298 -14 646 253 83 75 chrX 39119844 39119921 -137854219 + MIR SINE MIR 170 255 -7 21 0 0 0 chrX 39120168 39120189 -137853951 + AT_rich Low_complexity Low_complexity 1 21 0 2109 122 10 0 chrX 39120332 39120626 -137853514 - AluSx SINE Alu -15 297 1 24 32 0 0 chrX 39121009 39121040 -137853100 + AT_rich Low_complexity Low_complexity 1 31 0 2354 89 0 0 chrX 39121708 39122000 -137852140 - AluSg SINE Alu -18 292 1 330 323 16 8 chrX 39122005 39122132 -137852008 + L1ME LINE L1 332 459 -5611 277 305 10 61 chrX 39122234 39122431 -137851709 + L1ME LINE L1 467 653 -5417 3337 42 10 2 chrX 39122574 39122984 -137851156 + L1PA5 LINE L1 5737 6149 -5 361 212 176 32 chrX 39123039 39123193 -137850947 - MER41B LTR ERV1 -251 341 97 470 286 26 28 chrX 39123275 39123557 -137850583 - L1MC4 LINE L1 -725 7236 7001 200 182 0 0 chrX 39123589 39123622 -137850518 + CT-rich Low_complexity Low_complexity 2 34 0 987 231 64 25 chrX 39123633 39123914 -137850226 - L1MC4 LINE L1 -982 7060 6769 4624 211 98 58 chrX 39123934 39124242 -137849898 - L1MD2 LINE L1 -9 6350 6056 983 24 60 0 chrX 39124242 39124409 -137849731 + (TA)n Simple_repeat Simple_repeat 2 178 0 4624 211 98 58 chrX 39124409 39125324 -137848816 - L1MD2 LINE L1 -303 6056 5179 1929 145 0 3 chrX 39125324 39125613 -137848527 - AluJb SINE Alu -24 288 1 4624 211 98 58 chrX 39125613 39126204 -137847936 - L1MD2 LINE L1 -1180 5179 4613 1166 211 47 76 chrX 39126204 39126587 -137847553 - MLT1A2 LTR MaLR -2 372 1 4624 211 98 58 chrX 39126587 39127645 -137846495 - L1MD2 LINE L1 -1746 4613 3336 2343 68 3 7 chrX 39127645 39127978 -137846162 - AluSp SINE Alu 0 313 1 4624 211 98 58 chrX 39127978 39128189 -137845951 - L1MD2 LINE L1 -3023 3336 3135 1588 113 0 13 chrX 39128189 39128420 -137845720 - AluSg/x SINE Alu -3 309 82 23 0 0 0 chrX 39128545 39128568 -137845572 + AT_rich Low_complexity Low_complexity 1 23 0 7539 95 16 19 chrX 39128568 39129747 -137844393 - MER61-int LTR ERV1 -2649 2568 1393 1978 111 12 43 chrX 39129752 39129996 -137844144 - MER61-int LTR ERV1 -3945 1272 1022 2051 144 0 0 chrX 39129996 39130288 -137843852 + AluSg SINE Alu 1 292 -18 2249 106 30 0 chrX 39130290 39130592 -137843548 + AluSp SINE Alu 2 312 -1 1978 111 12 43 chrX 39130592 39130669 -137843471 - MER61-int LTR ERV1 -4196 1021 958 623 85 0 11 chrX 39130669 39130763 -137843377 - MER61-int LTR ERV1 -4377 840 748 301 271 0 0 chrX 39130764 39130834 -137843306 - tRNA-Glu-GAG tRNA tRNA -5 70 1 640 264 23 29 chrX 39130834 39131008 -137843132 - MER61B-int LTR ERV1 -4864 353 181 734 102 8 34 chrX 39131037 39131155 -137842985 - MER61B-int LTR ERV1 -5102 115 1 1545 171 148 39 chrX 39131163 39131520 -137842620 - MER61B LTR ERV1 -29 396 1 225 336 131 8 chrX 39131832 39131954 -137842186 - MIR SINE MIR -106 156 20 1242 199 8 17 chrX 39132357 39132598 -137841542 + MER8 DNA MER2_type 1 239 0 1962 163 0 0 chrX 39132826 39133121 -137841019 + AluJb SINE Alu 1 295 -17 476 321 54 60 chrX 39133708 39134060 -137840080 + L1M4 LINE L1 4061 4410 -1736 275 125 0 36 chrX 39134449 39134505 -137839635 + L1M4 LINE L1 4580 4633 -1513 245 241 139 0 chrX 39134814 39134893 -137839247 - MIR SINE MIR 0 262 173 2061 129 0 4 chrX 39135137 39135440 -137838700 - AluSc SINE Alu 0 304 3 311 313 0 0 chrX 39135502 39135585 -137838555 + MIR SINE MIR 45 127 -135 274 328 55 16 chrX 39135987 39136115 -137838025 - L2 LINE L2 -19 3294 3162 246 241 0 0 chrX 39136910 39136968 -137837172 + L2 LINE L2 3256 3313 0 207 400 0 29 chrX 39136951 39137021 -137837119 + L2 LINE L2 3119 3186 -86 * 183 345 179 0 chrX 39137204 39137288 -137836852 + L2 LINE L2 3142 3240 -32 236 301 21 0 chrX 39137307 39137400 -137836740 + MER113 DNA MER1_type? 1 95 -426 405 314 124 5 chrX 39137521 39137706 -137836434 - MIR SINE MIR -16 246 40 3430 108 6 12 chrX 39138535 39139034 -137835106 + MER39B LTR ERV1 158 653 0 303 288 72 32 chrX 39139046 39139171 -137834969 - MIR SINE MIR -41 221 92 314 191 94 30 chrX 39139471 39139614 -137834526 + LTR48 LTR ERV1 449 737 -49 1854 146 3 94 chrX 39139686 39140057 -137834083 - MER1B DNA MER1_type 0 337 1 236 163 143 0 chrX 39140385 39140434 -137833706 + MIR SINE MIR 93 148 -114 24 32 0 0 chrX 39140620 39140651 -137833489 + AT_rich Low_complexity Low_complexity 1 31 0 330 308 38 25 chrX 39141175 39141386 -137832754 - MIR SINE MIR -1 261 53 311 225 50 83 chrX 39141392 39141512 -137832628 + MER63 DNA MER1_type 2 743 -319 332 268 62 39 chrX 39141551 39141567 -137832573 + MIR SINE MIR 74 88 -174 2210 179 0 3 chrX 39141567 39141931 -137832209 + MLT1A1 LTR MaLR 3 365 0 332 268 62 39 chrX 39141931 39142093 -137832047 + MIR SINE MIR 88 256 -6 1670 189 102 50 chrX 39142981 39143423 -137830717 + MER31B LTR ERV1 1 543 0 5139 200 63 57 chrX 39143473 39143865 -137830275 + MER31B-int LTR ERV1 15 403 -4533 3852 186 35 1 chrX 39143865 39144573 -137829567 + MER44D DNA MER2_type 1 604 -1 5139 200 63 57 chrX 39144573 39145472 -137828668 + MER31B-int LTR ERV1 403 1314 -3622 2504 215 36 0 chrX 39146002 39146496 -137827644 + LTR53 LTR ERVL 1 512 -7 430 331 19 31 chrX 39146515 39146675 -137827465 - MIR SINE MIR -90 172 15 2155 109 7 0 chrX 39146762 39147047 -137827093 - AluSx SINE Alu -25 287 1 1954 86 0 0 chrX 39147070 39147313 -137826827 - AluSq SINE Alu -15 298 56 25129 123 9 8 chrX 39147314 39152118 -137822022 + L1PA8A LINE L1 1319 6119 -12 21 57 0 0 chrX 39152118 39152153 -137821987 + AT_rich Low_complexity Low_complexity 1 35 0 757 209 85 25 chrX 39152489 39152656 -137821484 - L1M4 LINE L1 -2780 3366 3174 839 181 81 0 chrX 39152656 39152816 -137821324 + FAM SINE Alu 1 173 -2 757 209 85 25 chrX 39152816 39152931 -137821209 - L1M4 LINE L1 -2972 3174 3067 * 6626 234 49 15 chrX 39152910 39155537 -137818603 - L1MB8 LINE L1 0 6178 3445 2254 111 7 0 chrX 39155537 39155844 -137818296 - AluSg SINE Alu -1 309 1 6626 234 49 15 chrX 39155844 39155969 -137818171 - L1MB8 LINE L1 -2733 3445 3326 1295 52 0 13 chrX 39156069 39156224 -137817916 - AluY SINE Alu -158 153 1 549 302 11 11 chrX 39156224 39156502 -137817638 - L1MB8 LINE L1 -2906 3240 2963 1175 187 60 87 chrX 39156507 39156644 -137817496 - L1MD2 LINE L1 -103 6650 6511 1936 90 45 64 chrX 39156644 39156955 -137817185 - AluSx SINE Alu -7 305 1 1175 187 60 87 chrX 39156955 39157186 -137816954 - L1MD2 LINE L1 -242 6511 6292 7495 47 2 0 chrX 39157186 39158886 -137815254 - L1PA5 LINE L1 -5 6149 4447 6335 233 38 17 chrX 39158896 39161187 -137812953 + L1MC/D LINE L1 3401 5741 -603 1613 138 20 0 chrX 39161187 39161440 -137812700 - MSTC LTR MaLR 0 428 171 10467 40 0 1 chrX 39161440 39162748 -137811392 - L1P LINE L1 -2220 3926 2620 1165 239 95 6 chrX 39162746 39163260 -137810880 - L1MD2 LINE L1 -449 6304 5609 * 1113 253 114 35 chrX 39163266 39164141 -137809999 - L1MD2 LINE L1 -3748 2793 1860 6078 103 13 32 chrX 39164162 39165340 -137808800 - L1PA10 LINE L1 0 6168 5011 414 132 33 22 chrX 39365342 39365433 -137608707 - L1M3e LINE L1 -4985 2045 1954 2382 85 0 31 chrX 39365444 39365761 -137608379 - AluSx SINE Alu -5 307 1 2019 129 0 20 chrX 39365789 39366083 -137608057 - AluJb SINE Alu -22 290 3 754 127 0 8 chrX 39366108 39366226 -137607914 - FLAM_C SINE Alu -25 118 2 6449 179 235 20 chrX 39366227 39367834 -137606306 - L1M3e LINE L1 -5072 1958 6 267 208 47 47 chrX 39367883 39367989 -137606151 - L1M4 LINE L1 -5557 1298 1193 1065 273 32 43 chrX 39368066 39368411 -137605729 - L1M4 LINE L1 -5667 1188 848 467 267 52 30 chrX 39368443 39368688 -137605452 - L1M4 LINE L1 -6306 549 16 329 250 62 28 chrX 39368693 39368837 -137605303 + L2 LINE L2 1678 1826 -1488 2260 113 10 0 chrX 39368880 39369181 -137604959 + AluSx SINE Alu 1 304 -8 1705 250 132 18 chrX 39369441 39369470 -137604670 - L1ME3A LINE L1 -233 5920 5896 189 0 0 0 chrX 39369470 39369491 -137604649 + (TG)n Simple_repeat Simple_repeat 2 22 0 2414 74 7 16 chrX 39369491 39369800 -137604340 - AluSx SINE Alu -6 306 1 1705 250 132 18 chrX 39369800 39370361 -137603779 - L1ME3A LINE L1 -257 5896 5401 1980 155 0 0 chrX 39370361 39370657 -137603483 + AluJb SINE Alu 3 298 -14 586 246 15 22 chrX 39370657 39370785 -137603355 - FLAM_A SINE Alu -6 127 1 1705 250 132 18 chrX 39370785 39370915 -137603225 - L1ME3A LINE L1 -751 5402 5140 1396 112 8 80 chrX 39370915 39371164 -137602976 - AluJb SINE Alu 0 312 82 870 261 123 74 chrX 39371229 39371594 -137602546 - L1ME3A LINE L1 -1066 5063 4718 1685 170 11 7 chrX 39371594 39371899 -137602241 - AluJb SINE Alu 0 306 1 870 261 123 74 chrX 39371899 39371932 -137602208 - L1ME3A LINE L1 -1411 4718 4688 1836 155 7 3 chrX 39371932 39372216 -137601924 - AluJb SINE Alu -27 285 1 870 261 123 74 chrX 39372216 39372562 -137601578 - L1ME3A LINE L1 -1441 4688 4280 217 0 29 29 chrX 39372584 39372618 -137601522 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1891 95 4 4 chrX 39372629 39372871 -137601269 - AluSx SINE Alu -39 273 32 2338 93 0 7 chrX 39372871 39373181 -137600959 - AluSx SINE Alu -4 308 1 3401 184 88 80 chrX 39373190 39374220 -137599920 - L1MC3 LINE L1 0 7785 6747 1409 263 99 31 chrX 39374225 39374925 -137599215 - L1ME3A LINE L1 -1890 4239 3493 3482 266 85 37 chrX 39375957 39377969 -137596171 - L1MEd LINE L1 -2629 3500 1312 354 45 0 0 chrX 39377969 39378013 -137596127 + (TAG)n Simple_repeat Simple_repeat 3 46 0 3482 266 85 37 chrX 39378013 39378519 -137595621 - L1MEd LINE L1 -4817 1312 832 700 207 20 25 chrX 39378520 39378718 -137595422 - HAL1 LINE L1 -331 2176 1980 1824 220 49 27 chrX 39378729 39379320 -137594820 + L2 LINE L2 2709 3313 0 234 327 44 0 chrX 39379958 39380071 -137594069 - L3 LINE CR1 -785 792 675 302 317 142 42 chrX 39380098 39380338 -137593802 - L2 LINE L2 -5 3267 3004 282 285 44 24 chrX 39380344 39380488 -137593652 - L1MDa LINE L1 -2299 4241 4093 2314 87 33 0 chrX 39380937 39381116 -137593024 - AluY SINE Alu -1 310 116 297 0 0 0 chrX 39381116 39381149 -137592991 + (TG)n Simple_repeat Simple_repeat 2 34 0 2314 87 33 0 chrX 39381149 39381269 -137592871 - AluY SINE Alu -195 116 1 343 279 79 64 chrX 39381301 39381566 -137592574 - L1MDa LINE L1 -4540 2000 1732 332 200 0 96 chrX 39381590 39381725 -137592415 - HAL1 LINE L1 -1441 1066 945 2051 134 0 0 chrX 39381730 39382047 -137592093 - AluSx SINE Alu 0 317 1 504 219 121 125 chrX 39382252 39382362 -137591778 + MIR SINE MIR 8 117 -145 390 85 34 0 chrX 39382362 39382421 -137591719 + U7 snRNA snRNA 2 62 -1 504 219 121 125 chrX 39382421 39382566 -137591574 + MIR SINE MIR 117 262 0 3890 199 47 25 chrX 39383229 39384150 -137589990 + L1ME LINE L1 3723 4663 -1483 320 346 28 28 chrX 39384278 39384489 -137589651 + L1ME LINE L1 5324 5534 -632 1887 171 10 0 chrX 39384967 39385265 -137588875 + AluJo SINE Alu 2 302 -10 2378 98 0 0 chrX 39385960 39386257 -137587883 + AluSq SINE Alu 1 297 -16 2122 103 3 3 chrX 39388105 39388418 -137585722 - AluSq SINE Alu 0 313 1 1018 128 70 0 chrX 39388418 39388574 -137585566 - FRAM SINE Alu -9 167 1 342 0 0 0 chrX 39388574 39388612 -137585528 + (TA)n Simple_repeat Simple_repeat 2 39 0 1849 160 14 0 chrX 39388612 39388920 -137585220 - AluSq SINE Alu 0 312 1 309 298 109 34 chrX 39388971 39389293 -137584847 - L1MDa LINE L1 -2451 4089 3744 379 100 0 0 chrX 39389321 39389371 -137584769 + Alu SINE Alu 1 50 -252 2343 71 3 17 chrX 39389372 39389666 -137584474 + AluSp SINE Alu 10 299 -14 284 224 30 18 chrX 39389773 39389938 -137584202 - L1MDa LINE L1 -2859 3681 3515 1061 118 0 0 chrX 39389941 39390093 -137584047 - AluSp/q SINE Alu -5 308 157 17680 31 3 6 chrX 39390193 39392365 -137581775 + L1P LINE L1 2459 4623 -1523 2305 87 33 0 chrX 39392900 39393078 -137581062 - AluY SINE Alu -2 309 116 297 0 0 0 chrX 39393078 39393111 -137581029 + (TG)n Simple_repeat Simple_repeat 2 34 0 2305 87 33 0 chrX 39393111 39393231 -137580909 - AluY SINE Alu -195 116 1 360 276 79 64 chrX 39393263 39393528 -137580612 - L1MDa LINE L1 -4540 2000 1732 332 200 0 96 chrX 39393552 39393687 -137580453 - HAL1 LINE L1 -1441 1066 945 2051 134 0 0 chrX 39393692 39394009 -137580131 - AluSx SINE Alu 0 317 1 493 223 121 125 chrX 39394214 39394324 -137579816 + MIR SINE MIR 8 117 -145 390 85 34 0 chrX 39394324 39394383 -137579757 + U7 snRNA snRNA 2 62 -1 493 223 121 125 chrX 39394383 39394528 -137579612 + MIR SINE MIR 117 262 0 3890 199 47 25 chrX 39395191 39396112 -137578028 + L1ME LINE L1 3723 4663 -1483 320 346 28 28 chrX 39396240 39396451 -137577689 + L1ME LINE L1 5324 5534 -632 1887 171 10 0 chrX 39396929 39397227 -137576913 + AluJo SINE Alu 2 302 -10 2385 95 0 0 chrX 39397922 39398218 -137575922 + AluSq SINE Alu 1 296 -17 2023 86 52 4 chrX 39400065 39400365 -137573775 - AluSp SINE Alu 0 313 1 1249 79 7 0 chrX 39400391 39400543 -137573597 + AluSp SINE Alu 1 153 -160 1465 101 5 0 chrX 39400545 39400734 -137573406 + AluSp SINE Alu 112 301 -12 704 299 108 29 chrX 39400737 39400942 -137573198 + L1ME LINE L1 4763 4950 -1196 2229 106 0 22 chrX 39400942 39401253 -137572887 + AluSx SINE Alu 1 304 -8 704 299 108 29 chrX 39401253 39401536 -137572604 + L1ME LINE L1 4950 5290 -856 1535 195 13 33 chrX 39401547 39401854 -137572286 + AluJo SINE Alu 1 301 -11 181 79 0 53 chrX 39401854 39401892 -137572248 + (GGA)n Simple_repeat Simple_repeat 1 36 0 646 287 61 65 chrX 39401913 39402225 -137571915 + L1ME LINE L1 5290 5601 -563 2203 117 0 13 chrX 39402225 39402532 -137571608 + AluSx SINE Alu 1 303 -9 646 287 61 65 chrX 39402532 39402662 -137571478 + L1ME LINE L1 5601 5730 -434 21 57 0 0 chrX 39402805 39402840 -137571300 + AT_rich Low_complexity Low_complexity 1 35 0 2193 130 3 0 chrX 39402890 39403190 -137570950 + AluSq SINE Alu 1 301 -12 198 270 0 0 chrX 39403581 39403655 -137570485 + CT-rich Low_complexity Low_complexity 1 74 0 2370 94 0 0 chrX 39404327 39404624 -137569516 - AluSg SINE Alu -13 297 1 1841 156 7 0 chrX 39406134 39406416 -137567724 + AluSx SINE Alu 11 294 -18 1882 121 0 0 chrX 39406424 39406672 -137567468 + AluSx SINE Alu 1 248 -64 28231 50 11 0 chrX 39407029 39410487 -137563653 + L1PA4 LINE L1 2 3497 -2649 8418 31 4 7 chrX 39410499 39412260 -137561880 + L1PA4 LINE L1 4393 6152 -3 42 65 0 0 chrX 39412362 39412439 -137561701 + AT_rich Low_complexity Low_complexity 1 77 0 691 164 55 0 chrX 39412439 39412567 -137561573 - AluJo SINE Alu -176 136 2 890 228 0 0 chrX 39412583 39412741 -137561399 + FAM SINE Alu 1 158 -17 1604 215 85 57 chrX 39412811 39413317 -137560823 - MLT2B1 LTR ERVL 0 520 1 13202 143 26 16 chrX 39413317 39415969 -137558171 - ERVL-B1 LTR ERVL -7 5757 3133 2317 138 25 0 chrX 39415969 39416324 -137557816 - THE1B LTR MaLR 0 364 1 13202 143 26 16 chrX 39416324 39416409 -137557731 - ERVL-B1 LTR ERVL -2631 3133 3050 718 200 0 15 chrX 39416409 39416539 -137557601 + FLAM_C SINE Alu 1 128 -5 2221 104 0 7 chrX 39416543 39416851 -137557289 + AluSx SINE Alu 1 306 -6 13202 143 26 16 chrX 39416851 39417073 -137557067 - ERVL-B1 LTR ERVL -2716 3048 2830 1843 173 0 10 chrX 39417073 39417386 -137556754 + AluJo SINE Alu 3 312 0 13202 143 26 16 chrX 39417386 39417717 -137556423 - ERVL-B1 LTR ERVL -2934 2830 2504 2661 141 26 60 chrX 39417717 39418220 -137555920 - LTR19A LTR ERV1 0 486 1 13202 143 26 16 chrX 39418220 39418794 -137555346 - ERVL-B1 LTR ERVL -3260 2504 1784 247 180 120 0 chrX 39420097 39420147 -137553993 + AluS SINE Alu 42 97 -205 2260 73 0 0 chrX 39420452 39420739 -137553401 + AluY SINE Alu 1 287 -24 2203 147 28 63 chrX 39421122 39421551 -137552589 - LTR3 LTR ERVK -14 418 5 600 137 0 11 chrX 39421555 39421650 -137552490 - HERVK3 LTR ERVK 0 7243 7150 8421 109 25 2 chrX 39421669 39422881 -137551259 - HERVK3 LTR ERVK -1885 5358 4119 * 10537 119 17 8 chrX 39422868 39424428 -137549712 - HERVK3 LTR ERVK -4333 2910 1336 6572 113 33 5 chrX 39424426 39425391 -137548749 - HERVK3 LTR ERVK -6211 1032 41 * 2304 147 25 54 chrX 39425392 39425833 -137548307 - LTR3 LTR ERVK 0 432 5 950 82 82 0 chrX 39426588 39426723 -137547417 + LTR9B LTR ERV1 1 146 -498 720 217 0 0 chrX 39426726 39426855 -137547285 - LTR8 LTR ERV1 -562 129 1 6092 75 15 15 chrX 39426855 39427657 -137546483 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16707 102 23 12 chrX 39427651 39430230 -137543910 + HUERS-P3b LTR ERV1 2124 7405 -13 1323 80 62 0 chrX 39430237 39430413 -137543727 + LTR9B LTR ERV1 1 187 -457 2122 108 16 3 chrX 39430413 39430718 -137543422 + AluSx SINE Alu 1 309 -3 828 139 21 14 chrX 39430719 39430863 -137543277 + AluJb SINE Alu 136 280 -32 267 31 0 0 chrX 39430872 39430904 -137543236 + (TATG)n Simple_repeat Simple_repeat 4 35 0 519 170 18 9 chrX 39430904 39431009 -137543131 - MLT2D LTR ERVL -305 109 1 1141 218 58 19 chrX 39431292 39431553 -137542587 - L1MC4 LINE L1 -132 7910 7640 2133 153 3 12 chrX 39432207 39432546 -137541594 - MLT1A1 LTR MaLR -18 347 12 2221 106 0 6 chrX 39433710 39434123 -137540017 + AluSx SINE Alu 1 411 0 219 36 0 0 chrX 39434123 39434151 -137539989 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 313 222 51 45 chrX 39434578 39434754 -137539386 + L1MEd LINE L1 921 1097 -5022 250 240 62 58 chrX 39434838 39435046 -137539094 + L1 LINE L1 4285 4493 -1653 2123 110 0 0 chrX 39435054 39435346 -137538794 + AluSq SINE Alu 2 293 -20 1408 165 0 0 chrX 39435346 39435570 -137538570 + AluJb SINE Alu 83 306 -6 1752 145 11 0 chrX 39435579 39435855 -137538285 + AluJb SINE Alu 19 297 -15 1210 255 88 84 chrX 39435859 39436168 -137537972 + L1ME3A LINE L1 4496 4802 -1360 2136 88 6 44 chrX 39436168 39436486 -137537654 + AluSx SINE Alu 1 306 -6 1210 255 88 84 chrX 39436486 39436759 -137537381 + L1ME3A LINE L1 4802 5072 -1090 832 110 0 59 chrX 39436759 39436895 -137537245 - FLAM_C SINE Alu -5 128 1 1210 255 88 84 chrX 39436895 39437204 -137536936 + L1ME3A LINE L1 5072 5378 -784 1527 143 37 50 chrX 39437204 39437504 -137536636 + AluJo SINE Alu 1 296 -16 1210 255 88 84 chrX 39437504 39437779 -137536361 + L1ME3A LINE L1 5378 5669 -493 2323 90 0 0 chrX 39437779 39438079 -137536061 + AluSx SINE Alu 1 300 -12 1210 255 88 84 chrX 39438079 39438214 -137535926 + L1ME3A LINE L1 5669 5802 -360 1536 136 122 18 chrX 39438214 39438500 -137535640 - LOR1a LTR ERV1 0 497 182 991 164 26 36 chrX 39438486 39438681 -137535459 - LOR1b LTR ERV1 -190 271 79 * 556 230 51 22 chrX 39438708 39438886 -137535254 + L1ME3A LINE L1 5798 5980 -190 811 191 0 0 chrX 39438978 39439114 -137535026 + AluJo SINE Alu 2 137 -175 568 114 0 88 chrX 39439114 39439228 -137534912 + MER50 LTR ERV1 497 600 -134 956 153 18 24 chrX 39439229 39439399 -137534741 + AluJo SINE Alu 121 289 -23 1743 149 7 0 chrX 39439891 39440167 -137533973 - AluJb SINE Alu -34 278 1 1053 217 4 0 chrX 39440602 39440828 -137533312 + L1MC1 LINE L1 4962 5188 -958 983 98 8 0 chrX 39440829 39440962 -137533178 + AluSq/x SINE Alu 3 136 -176 2125 112 3 0 chrX 39440965 39441261 -137532879 + AluSq SINE Alu 3 299 -14 539 125 0 0 chrX 39441272 39441352 -137532788 + AluSg/x SINE Alu 219 298 -14 6633 125 26 9 chrX 39441352 39441502 -137532638 + L1MC1 LINE L1 5181 5327 -1006 657 204 15 8 chrX 39441502 39441634 -137532506 + FLAM_A SINE Alu 1 133 0 6633 125 26 9 chrX 39441634 39442591 -137531549 + L1MC1 LINE L1 5327 6312 -21 1747 134 25 4 chrX 39442591 39442730 -137531410 - AluSx SINE Alu -30 282 148 2104 38 8 8 chrX 39442730 39442992 -137531148 - AluY SINE Alu -3 308 47 1747 134 25 4 chrX 39442992 39443128 -137531012 - AluSx SINE Alu -164 148 1 27 0 0 0 chrX 39443128 39443155 -137530985 + AT_rich Low_complexity Low_complexity 1 27 0 460 331 39 31 chrX 39443187 39443444 -137530696 + ERVL LTR ERVL 445 703 -5061 388 275 100 31 chrX 39443492 39443652 -137530488 + ERVL LTR ERVL 852 1022 -4742 302 65 0 0 chrX 39443660 39443706 -137530434 + Alu SINE Alu 257 302 0 2351 53 0 0 chrX 39443804 39444088 -137530052 - AluY SINE Alu -17 294 11 2266 79 7 0 chrX 39444089 39444393 -137529747 - AluSp SINE Alu -7 306 1 3505 190 156 17 chrX 39444434 39444447 -137529693 - L1M4 LINE L1 -798 5348 5338 1726 91 4 0 chrX 39444447 39444677 -137529463 - AluSx SINE Alu -81 231 1 3505 190 156 17 chrX 39444677 39445153 -137528987 - L1M4 LINE L1 -808 5338 4930 1617 139 0 93 chrX 39445153 39445477 -137528663 + AluJo SINE Alu 1 294 -18 3505 190 156 17 chrX 39445477 39445571 -137528569 - L1M4 LINE L1 -1216 4930 4850 2249 83 0 19 chrX 39445571 39445883 -137528257 - AluSg SINE Alu -4 306 1 3505 190 156 17 chrX 39445883 39446239 -137527901 - L1M4 LINE L1 -1296 4850 4276 1805 156 0 20 chrX 39446250 39446552 -137527588 - AluJo SINE Alu -16 296 1 1334 188 4 4 chrX 39446554 39446820 -137527320 - L1M4 LINE L1 -2222 3924 3659 318 360 17 24 chrX 39446821 39447118 -137527022 + ERVL LTR ERVL 1091 1385 -4379 1025 248 113 39 chrX 39447119 39447534 -137526606 + MLT1J1 LTR MaLR 1 446 0 913 239 124 32 chrX 39447875 39448223 -137525917 + ERVL LTR ERVL 1761 2140 -3345 2343 249 96 14 chrX 39448520 39449252 -137524888 + ERVL LTR ERVL 3522 4313 -1451 647 193 13 145 chrX 39449405 39449633 -137524507 + MLT1E-int LTR MaLR 974 1171 -200 850 133 30 0 chrX 39449633 39449768 -137524372 + FLAM_C SINE Alu 1 139 -4 2140 60 60 0 chrX 39449771 39450052 -137524088 - AluY SINE Alu -13 298 1 365 311 68 6 chrX 39450081 39450258 -137523882 + MLT1E-int LTR MaLR 1160 1347 -24 2171 183 101 68 chrX 39450289 39450391 -137523749 + MLT1E LTR MaLR 10 107 -486 2241 78 7 0 chrX 39450391 39450684 -137523456 - AluSp SINE Alu -17 296 2 2171 183 101 68 chrX 39450684 39451144 -137522996 + MLT1E LTR MaLR 107 591 -2 553 261 37 8 chrX 39451146 39451280 -137522860 + ERVL LTR ERVL 4173 4310 -1454 243 241 228 0 chrX 39452191 39452270 -137521870 - L2 LINE L2 -191 3081 2985 706 160 16 44 chrX 39453247 39453568 -137520572 + L1MB8 LINE L1 5819 6178 0 181 221 74 147 chrX 39453736 39453786 -137520354 - L2 LINE L2 -568 2746 2705 432 141 0 0 chrX 39453786 39453857 -137520283 + L1MB7 LINE L1 6105 6175 -9 181 221 74 147 chrX 39453857 39453901 -137520239 - L2 LINE L2 -609 2705 2659 210 202 146 45 chrX 39454008 39454097 -137520043 - MIR3 SINE MIR -103 105 8 25 0 0 0 chrX 39454210 39454235 -137519905 + AT_rich Low_complexity Low_complexity 1 25 0 248 281 16 0 chrX 39454513 39454577 -137519563 + GA-rich Low_complexity Low_complexity 3 67 0 423 247 21 0 chrX 39459314 39459407 -137514733 - MER5B DNA MER1_type -4 174 80 264 330 113 9 chrX 39459334 39459449 -137514691 + MER5A DNA MER1_type 36 162 -27 * 655 274 38 28 chrX 39462024 39462236 -137511904 + MIR SINE MIR 49 262 0 195 220 80 0 chrX 39462278 39462328 -137511812 - MIR SINE MIR -63 145 92 287 291 110 16 chrX 39463170 39463297 -137510843 - MIR SINE MIR -54 208 70 261 302 162 22 chrX 39463336 39463515 -137510625 - MIR SINE MIR 0 262 59 345 247 163 24 chrX 39464388 39464554 -137509586 - HAL1 LINE L1 -1 2506 2318 3259 224 171 60 chrX 39464560 39464926 -137509214 - HAL1 LINE L1 -458 2049 1725 2309 32 42 3 chrX 39464926 39465210 -137508930 - AluY SINE Alu -15 296 2 3259 224 171 60 chrX 39465210 39465871 -137508269 - HAL1 LINE L1 -782 1725 1139 1799 110 88 0 chrX 39465871 39466143 -137507997 - AluSx SINE Alu -11 301 6 3259 224 171 60 chrX 39466143 39466610 -137507530 - HAL1 LINE L1 -1368 1139 725 2512 62 0 0 chrX 39466610 39466901 -137507239 - AluY SINE Alu -20 291 1 3259 224 171 60 chrX 39466901 39467238 -137506902 - HAL1 LINE L1 -1782 725 1 248 307 79 18 chrX 39467252 39467366 -137506774 + L1MB7 LINE L1 5480 5600 -521 357 192 64 0 chrX 39467395 39467473 -137506667 - L1M4 LINE L1 -1569 4577 4495 23 0 0 0 chrX 39467957 39467980 -137506160 + AT_rich Low_complexity Low_complexity 1 23 0 1519 178 178 10 chrX 39468191 39468591 -137505549 + L1MB7 LINE L1 5718 6184 0 1487 154 24 48 chrX 39468635 39468688 -137505452 - MER33 DNA MER1_type -2261 324 271 2423 109 0 0 chrX 39468688 39468999 -137505141 + AluSx SINE Alu 2 312 0 2444 82 0 7 chrX 39469004 39469307 -137504833 + AluSq SINE Alu 7 307 -6 1487 154 24 48 chrX 39469307 39469579 -137504561 - MER33 DNA MER1_type -2318 267 1 2448 61 0 61 chrX 39469774 39470104 -137504036 + AluSx SINE Alu 3 312 0 367 346 58 0 chrX 39470479 39470583 -137503557 + L1MC4 LINE L1 6603 6712 -1330 2459 75 3 7 chrX 39470605 39470910 -137503230 - AluSx SINE Alu -8 304 1 2431 97 0 3 chrX 39470911 39471222 -137502918 - AluSx SINE Alu -2 310 1 25 0 0 0 chrX 39471492 39471517 -137502623 + AT_rich Low_complexity Low_complexity 1 25 0 921 281 78 8 chrX 39472021 39472277 -137501863 + MLT1J LTR MaLR 1 274 -237 309 260 83 0 chrX 39473328 39473424 -137500716 - MIR SINE MIR -60 202 99 320 282 176 0 chrX 39473442 39473584 -137500556 - MIR SINE MIR -27 235 69 2503 74 3 0 chrX 39474409 39474708 -137499432 - AluSg SINE Alu -10 300 1 2358 101 0 3 chrX 39474825 39475132 -137499008 + AluSx SINE Alu 1 306 -6 201 167 0 0 chrX 39475458 39475494 -137498646 + (TATG)n Simple_repeat Simple_repeat 4 39 0 335 240 127 27 chrX 39475908 39476058 -137498082 + L1ME4a LINE L1 5882 6046 -75 2230 111 0 10 chrX 39476067 39476365 -137497775 - AluJb SINE Alu -17 295 1 614 274 77 83 chrX 39477144 39477666 -137496474 - L2 LINE L2 -1 3271 2751 298 252 107 10 chrX 39478517 39478620 -137495520 + MIR SINE MIR 116 228 -34 349 261 34 11 chrX 39478648 39478736 -137495404 + L2 LINE L2 3147 3236 -36 977 199 0 0 chrX 39478766 39478917 -137495223 + FAM SINE Alu 1 151 -34 180 0 0 0 chrX 39478924 39478944 -137495196 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2033 142 14 0 chrX 39480681 39480976 -137493164 - AluJb SINE Alu -8 304 6 288 233 165 19 chrX 39481056 39481159 -137492981 - MIR SINE MIR -42 220 103 221 376 21 0 chrX 39481185 39481278 -137492862 + MIR SINE MIR 36 130 -78 610 167 0 0 chrX 39482012 39482108 -137492032 - FLAM_C SINE Alu -15 128 33 223 320 97 0 chrX 39482818 39482921 -137491219 - MIR SINE MIR -66 142 30 352 301 142 0 chrX 39483415 39483528 -137490612 + MIR SINE MIR 20 148 -114 467 316 50 1 chrX 39484100 39484267 -137489873 - MIR3 SINE MIR -28 180 4 278 280 243 23 chrX 39486249 39486463 -137487677 - MIR SINE MIR -1 261 1 246 299 231 8 chrX 39488486 39488603 -137485537 + L2 LINE L2 3129 3271 -1 285 239 151 24 chrX 39488835 39488976 -137485164 + MIR SINE MIR 16 138 -124 193 107 0 0 chrX 39488976 39489004 -137485136 + L2 LINE L2 3223 3250 -22 285 239 151 24 chrX 39489004 39489020 -137485120 + MIR SINE MIR 138 262 0 185 286 48 89 chrX 39489043 39489211 -137484929 - MIR SINE MIR -3 259 99 322 278 49 32 chrX 39489401 39489528 -137484612 - MIR SINE MIR -28 180 70 201 171 0 24 chrX 39489701 39489742 -137484398 + (TGG)n Simple_repeat Simple_repeat 3 42 0 237 304 0 0 chrX 39489866 39489922 -137484218 + MIR SINE MIR 16 71 -137 485 282 8 0 chrX 39490022 39490139 -137484001 - L2 LINE L2 0 3313 3196 335 250 62 0 chrX 39490157 39490253 -137483887 + MIR SINE MIR 96 197 -65 657 156 55 16 chrX 39490282 39490410 -137483730 - MIR SINE MIR -93 169 37 206 342 35 9 chrX 39490781 39490895 -137483245 + L2 LINE L2 2513 2629 -685 320 257 109 10 chrX 39490897 39490998 -137483142 + L1MC4 LINE L1 6586 6696 -1346 551 168 174 0 chrX 39491031 39491180 -137482960 + L1MC4 LINE L1 6997 7171 -871 1423 165 97 36 chrX 39491235 39491526 -137482614 + L1MC4 LINE L1 6762 7034 -1008 1929 147 27 3 chrX 39491526 39491818 -137482322 + AluJo SINE Alu 1 299 -13 1423 165 97 36 chrX 39491818 39491996 -137482144 + L1MC4 LINE L1 7034 7338 -704 294 298 88 56 chrX 39492143 39492358 -137481782 + L2 LINE L2 2870 3091 -181 981 207 30 5 chrX 39492448 39492651 -137481489 - MER3 DNA MER1_type 0 209 2 815 98 0 33 chrX 39492694 39492816 -137481324 - AluSg/x SINE Alu -3 306 189 180 0 0 0 chrX 39493171 39493191 -137480949 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 380 285 184 0 chrX 39493594 39493752 -137480388 - MIR SINE MIR -24 238 52 245 264 191 18 chrX 39494244 39494354 -137479786 + MIR SINE MIR 20 148 -60 394 302 82 6 chrX 39494636 39494795 -137479345 - MIR SINE MIR -82 180 10 26 0 0 0 chrX 39495247 39495273 -137478867 + AT_rich Low_complexity Low_complexity 1 26 0 213 39 0 0 chrX 39497093 39497119 -137477021 + (TGG)n Simple_repeat Simple_repeat 1 26 0 283 230 40 87 chrX 39497537 39497663 -137476477 - MIR3 SINE MIR -25 183 64 301 190 33 16 chrX 39498108 39498229 -137475911 + GA-rich Low_complexity Low_complexity 2 124 0 725 262 33 14 chrX 39499168 39499382 -137474758 - MIR SINE MIR -25 237 20 237 150 0 0 chrX 39499632 39499672 -137474468 + L3 LINE CR1 1195 1234 -343 396 315 102 5 chrX 39499832 39500029 -137474111 - MIR SINE MIR -13 249 34 445 183 287 18 chrX 39500057 39500221 -137473919 + L3 LINE CR1 1363 1570 -7 2045 141 13 0 chrX 39500521 39500825 -137473315 - AluJo SINE Alu -4 308 1 355 276 61 0 chrX 39502089 39502187 -137471953 + L2 LINE L2 3147 3250 -22 377 219 73 0 chrX 39502261 39502343 -137471797 - MIR SINE MIR -66 196 109 1066 146 101 0 chrX 39502367 39502566 -137471574 + MER20 DNA MER1_type 1 219 0 447 315 116 17 chrX 39502568 39502800 -137471340 + L3 LINE CR1 1212 1466 -111 2431 83 3 3 chrX 39502922 39503223 -137470917 - AluSx SINE Alu -11 301 1 2057 137 6 13 chrX 39503241 39503555 -137470585 - AluJb SINE Alu 0 312 1 394 277 59 121 chrX 39504226 39504299 -137469841 + L2 LINE L2 2950 3026 -246 2551 84 0 0 chrX 39504299 39504608 -137469532 + AluSx SINE Alu 1 309 -3 394 277 59 121 chrX 39504608 39504873 -137469267 + L2 LINE L2 3026 3267 -5 2298 110 0 10 chrX 39504876 39505185 -137468955 - AluSx SINE Alu -6 306 1 291 256 165 41 chrX 39505274 39505469 -137468671 - MIR SINE MIR -8 254 34 819 249 193 67 chrX 39505852 39506085 -137468055 + L1ME4a LINE L1 5421 5623 -498 2249 101 10 10 chrX 39506085 39506393 -137467747 + AluSc SINE Alu 1 308 -1 819 249 193 67 chrX 39506393 39506413 -137467727 + L1ME4a LINE L1 5623 5639 -482 2005 133 0 4 chrX 39506413 39506691 -137467449 + AluJb SINE Alu 24 300 -12 819 249 193 67 chrX 39506691 39507046 -137467094 + L1ME4a LINE L1 5639 6107 -14 279 54 0 0 chrX 39507084 39507121 -137467019 + (CA)n Simple_repeat Simple_repeat 2 38 0 2093 120 43 0 chrX 39507306 39507605 -137466535 + AluJo SINE Alu 1 312 0 2297 123 3 0 chrX 39508000 39508309 -137465831 - AluSx SINE Alu -2 310 1 341 320 56 74 chrX 39508337 39508674 -137465466 + L2 LINE L2 2919 3249 -23 214 308 8 39 chrX 39508706 39508836 -137465304 + (TGAA)n Simple_repeat Simple_repeat 4 129 0 267 235 59 35 chrX 39508846 39508931 -137465209 + L2 LINE L2 3205 3291 -22 645 301 21 5 chrX 39509466 39509652 -137464488 - MIR SINE MIR -43 219 31 207 170 0 43 chrX 39509717 39509764 -137464376 - MIR SINE MIR -187 75 31 1017 227 11 37 chrX 39509769 39510038 -137464102 + MIR SINE MIR 1 262 0 408 287 73 15 chrX 39510052 39510188 -137463952 - MIR SINE MIR -12 250 107 235 250 9 112 chrX 39510582 39510698 -137463442 - MIR3 SINE MIR -40 168 65 330 239 0 0 chrX 39511152 39511223 -137462917 - MIR3 SINE MIR -45 163 93 199 310 0 28 chrX 39511385 39511456 -137462684 - L3 LINE CR1 -4 1573 1505 445 323 31 0 chrX 39511614 39511744 -137462396 + MIR SINE MIR 56 189 -73 263 300 42 50 chrX 39511993 39512113 -137462027 - MIR SINE MIR -73 135 17 236 291 87 55 chrX 39512141 39512268 -137461872 - MIR3 SINE MIR -73 135 5 209 93 19 74 chrX 39512725 39512779 -137461361 + (CTGGGG)n Simple_repeat Simple_repeat 2 52 0 312 324 20 0 chrX 39513328 39513430 -137460710 + GA-rich Low_complexity Low_complexity 4 107 0 699 222 52 7 chrX 39513765 39513918 -137460222 + MLT1F LTR MaLR 1 160 -382 2184 115 3 0 chrX 39513924 39514210 -137459930 + AluJo SINE Alu 1 287 -25 2194 121 7 0 chrX 39514210 39514507 -137459633 - AluSx SINE Alu -13 299 1 46 62 0 0 chrX 39514507 39514588 -137459552 + AT_rich Low_complexity Low_complexity 1 81 0 1252 174 77 84 chrX 39514675 39514986 -137459154 + MLT1F LTR MaLR 234 542 0 248 250 0 17 chrX 39515109 39515169 -137458971 + L2 LINE L2 3254 3312 -1 406 296 78 48 chrX 39515363 39515569 -137458571 - MIR SINE MIR -6 256 45 186 399 11 16 chrX 39515627 39515810 -137458330 + L2 LINE L2 2919 3100 -172 339 211 294 0 chrX 39515939 39516048 -137458092 + MIR SINE MIR 117 257 -5 2267 110 3 3 chrX 39516195 39516495 -137457645 + AluSx SINE Alu 1 300 -12 235 232 0 21 chrX 39517375 39517470 -137456670 + GA-rich Low_complexity Low_complexity 2 94 0 186 304 223 18 chrX 39517647 39517759 -137456381 + L2 LINE L2 3134 3268 -4 1059 244 8 4 chrX 39519870 39520128 -137454012 - MIR SINE MIR -1 261 3 186 244 0 0 chrX 39520526 39520571 -137453569 + L2 LINE L2 3249 3293 -20 1918 115 41 0 chrX 39520719 39521018 -137453122 + AluSx SINE Alu 1 310 0 189 0 0 0 chrX 39521020 39521041 -137453099 + (CCA)n Simple_repeat Simple_repeat 1 21 0 2359 95 10 0 chrX 39521055 39521359 -137452781 + AluSx SINE Alu 1 307 -5 1882 154 7 7 chrX 39521369 39521661 -137452479 + AluSx SINE Alu 1 292 -20 2256 123 3 0 chrX 39521666 39521974 -137452166 + AluJb SINE Alu 2 310 -2 1120 226 91 69 chrX 39522030 39522648 -137451492 - L2 LINE L2 -4 3309 2692 620 214 48 14 chrX 39522896 39523041 -137451099 - MIR SINE MIR -66 196 47 360 266 77 7 chrX 39523421 39523564 -137450576 + MIR SINE MIR 21 173 -89 306 50 0 0 chrX 39523639 39523679 -137450461 + (CA)n Simple_repeat Simple_repeat 1 40 0 285 186 0 0 chrX 39523764 39523834 -137450306 + (CA)n Simple_repeat Simple_repeat 2 71 0 495 280 132 5 chrX 39524025 39524214 -137449926 - MIR SINE MIR 0 262 50 195 229 57 43 chrX 39524899 39524969 -137449171 + MIR3 SINE MIR 5 75 -133 461 272 8 8 chrX 39525068 39525193 -137448947 - MIR SINE MIR -126 136 12 189 247 65 13 chrX 39525346 39525423 -137448717 + L3b LINE CR1 1345 1425 -158 272 296 35 35 chrX 39525426 39525541 -137448599 - MIR3 SINE MIR -12 196 82 210 326 31 23 chrX 39526751 39526880 -137447260 + L2 LINE L2 2925 3054 -218 856 161 0 0 chrX 39527088 39527212 -137446928 - FLAM_C SINE Alu -19 124 1 232 295 16 23 chrX 39527287 39527416 -137446724 + (TGAG)n Simple_repeat Simple_repeat 1 128 0 435 302 54 7 chrX 39527588 39527737 -137446403 - MIR SINE MIR -76 186 31 367 248 119 18 chrX 39528180 39528289 -137445851 - MIR3 SINE MIR -2 206 87 234 156 0 0 chrX 39529166 39529211 -137444929 + CT-rich Low_complexity Low_complexity 1 45 0 646 230 126 29 chrX 39529520 39529694 -137444446 - MIR SINE MIR -43 219 29 505 268 112 27 chrX 39529833 39530057 -137444083 + MIR SINE MIR 20 262 0 240 210 0 32 chrX 39530384 39530446 -137443694 + GA-rich Low_complexity Low_complexity 3 62 0 205 301 97 21 chrX 39530581 39530674 -137443466 + MIR SINE MIR 92 191 -71 606 308 58 14 chrX 39530928 39531136 -137443004 + MIR SINE MIR 20 236 -26 270 348 10 60 chrX 39531173 39531374 -137442766 + L2 LINE L2 2857 3047 -225 1110 314 157 19 chrX 39531550 39532440 -137441700 + L2 LINE L2 1532 2544 -770 1552 223 109 13 chrX 39532453 39532901 -137441239 + L2 LINE L2 2823 3313 0 183 42 0 0 chrX 39533190 39533214 -137440926 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 340 337 89 20 chrX 39534178 39534424 -137439716 + L2 LINE L2 2920 3182 -90 593 299 19 24 chrX 39534483 39534694 -137439446 - MIR SINE MIR 0 262 53 180 283 0 0 chrX 39535045 39535091 -137439049 - L2 LINE L2 -74 3198 3153 * 653 242 71 0 chrX 39535083 39535265 -137438875 - MIR SINE MIR -34 228 34 457 304 76 61 chrX 39535359 39535622 -137438518 + L2 LINE L2 3004 3270 -2 889 276 75 6 chrX 39535807 39536126 -137438014 - L1MC4a LINE L1 -1868 5940 5600 1609 304 82 61 chrX 39536434 39536596 -137437544 - L1MC4a LINE L1 -503 5618 5461 2703 58 0 0 chrX 39536596 39536907 -137437233 - AluY SINE Alu 0 311 1 1609 304 82 61 chrX 39536907 39537307 -137436833 - L1MC4a LINE L1 -660 5461 5071 1688 125 46 59 chrX 39537307 39537610 -137436530 - AluSx SINE Alu -13 299 1 1609 304 82 61 chrX 39537610 39537872 -137436268 - L1MC4a LINE L1 -1050 5071 4816 1969 62 138 33 chrX 39537872 39538147 -137435993 - AluY SINE Alu -7 304 1 1609 304 82 61 chrX 39538147 39538884 -137435256 - L1MC4a LINE L1 -1305 4816 4095 233 132 0 0 chrX 39538884 39538922 -137435218 - MLT1F1 LTR MaLR -4 563 526 1609 304 82 61 chrX 39538922 39539360 -137434780 - L1MC4a LINE L1 -2026 4095 3667 2301 82 0 30 chrX 39539360 39539665 -137434475 - AluSg SINE Alu -14 296 1 1609 304 82 61 chrX 39539665 39539817 -137434323 - L1MC4a LINE L1 -2454 3667 3520 2412 100 0 0 chrX 39539817 39540117 -137434023 - AluSx SINE Alu -12 300 1 1609 304 82 61 chrX 39540117 39540145 -137433995 - L1MC4a LINE L1 -2601 3520 3494 2704 58 0 0 chrX 39540145 39540456 -137433684 - AluY SINE Alu 0 311 1 1609 304 82 61 chrX 39540456 39540923 -137433217 - L1MC4a LINE L1 -2627 3494 2877 2409 85 0 16 chrX 39541042 39541348 -137432792 + AluSg SINE Alu 1 301 -9 274 276 41 10 chrX 39541367 39541465 -137432675 + L2 LINE L2 2941 3041 -231 622 233 3 13 chrX 39541808 39542119 -137432021 + GA-rich Low_complexity Low_complexity 1 308 0 298 217 17 0 chrX 39542492 39542612 -137431528 + GA-rich Low_complexity Low_complexity 2 123 0 254 352 97 45 chrX 39543945 39544121 -137430019 - MIR SINE MIR -77 185 1 330 276 124 0 chrX 39544407 39544512 -137429628 - MIR SINE MIR -62 146 29 2010 127 3 59 chrX 39545061 39545383 -137428757 + AluSx SINE Alu 1 304 -8 189 162 0 0 chrX 39545409 39545446 -137428694 + MIR SINE MIR 81 117 -91 300 308 168 7 chrX 39545453 39545596 -137428544 + MIR SINE MIR 20 185 -77 468 211 26 18 chrX 39545885 39545999 -137428141 - L2 LINE L2 -19 3294 3180 371 284 125 0 chrX 39546048 39546224 -137427916 - L2 LINE L2 -338 2976 2779 367 318 63 55 chrX 39546659 39546914 -137427226 + L2 LINE L2 2985 3241 -31 679 297 75 43 chrX 39547181 39547555 -137426585 + L2 LINE L2 2887 3272 0 324 345 115 7 chrX 39547576 39547715 -137426425 + MIR SINE MIR 88 241 -21 2480 81 0 3 chrX 39548806 39549116 -137425024 + AluSc SINE Alu 1 309 0 209 282 71 12 chrX 39550361 39550446 -137423694 - MIR3 SINE MIR -10 198 109 352 298 30 15 chrX 39550834 39550965 -137423175 - MIR SINE MIR -60 202 70 224 238 32 32 chrX 39550965 39551028 -137423112 + MIR SINE MIR 65 127 -81 237 213 49 16 chrX 39551331 39551392 -137422748 - MIR SINE MIR -68 140 78 340 301 64 6 chrX 39551995 39552151 -137421989 + MIR SINE MIR 96 260 -2 376 231 5 156 chrX 39552231 39552417 -137421723 + MIR SINE MIR 34 191 -71 431 330 76 16 chrX 39552977 39553162 -137420978 + MER91A DNA MER1_type 1 196 0 261 0 0 0 chrX 39553481 39553510 -137420630 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 577 244 14 34 chrX 39554187 39554396 -137419744 - L2 LINE L2 -338 2976 2772 454 227 66 58 chrX 39554402 39554588 -137419552 + MIR3 SINE MIR 3 185 -62 262 306 14 0 chrX 39554635 39554707 -137419433 - MIR3 SINE MIR -28 180 108 183 239 0 0 chrX 39554919 39554965 -137419175 + (TG)n Simple_repeat Simple_repeat 2 47 0 264 306 93 72 chrX 39555352 39555545 -137418595 + MIR SINE MIR 59 255 -7 200 167 95 0 chrX 39555964 39556006 -137418134 - L2 LINE L2 -12 3260 3215 * 518 263 190 5 chrX 39555973 39556178 -137417962 - MIR SINE MIR -19 243 1 421 324 45 11 chrX 39556631 39556807 -137417333 + MIR3 SINE MIR 20 201 -7 2256 106 0 0 chrX 39556947 39557269 -137416871 - AluSx SINE Alu 0 322 1 2622 68 0 0 chrX 39557469 39557779 -137416361 + AluY SINE Alu 1 310 -1 2468 71 7 0 chrX 39558184 39558479 -137415661 - AluSx SINE Alu -15 297 1 2276 117 0 3 chrX 39558706 39559006 -137415134 - AluSx SINE Alu -13 299 1 227 193 0 35 chrX 39559082 39559139 -137415001 - HAL1 LINE L1 -299 2208 2154 1439 155 0 5 chrX 39559150 39559363 -137414777 - AluSg/x SINE Alu -17 295 84 3750 254 62 78 chrX 39559364 39559481 -137414659 - HAL1 LINE L1 -358 2149 2032 2066 145 17 0 chrX 39559481 39559771 -137414369 - AluJb SINE Alu -17 295 1 3750 254 62 78 chrX 39559771 39559992 -137414148 - HAL1 LINE L1 -475 2032 1809 2328 107 0 0 chrX 39559992 39560292 -137413848 + AluSx SINE Alu 1 300 -12 3750 254 62 78 chrX 39560292 39561222 -137412918 - HAL1 LINE L1 -698 1809 865 872 142 0 8 chrX 39561222 39561356 -137412784 - FLAM_C SINE Alu 0 133 1 3750 254 62 78 chrX 39561356 39561902 -137412238 - HAL1 LINE L1 -1642 865 365 1546 174 60 25 chrX 39561902 39562065 -137412075 - AluJo SINE Alu -19 293 114 216 0 0 0 chrX 39562065 39562089 -137412051 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1546 174 60 25 chrX 39562089 39562206 -137411934 - AluJo SINE Alu -198 114 3 3750 254 62 78 chrX 39562206 39562331 -137411809 - HAL1 LINE L1 -2142 365 239 245 349 47 0 chrX 39562346 39562452 -137411688 - HAL1 LINE L1 -2394 113 3 547 266 44 92 chrX 39562452 39562768 -137411372 + L2 LINE L2 2972 3272 0 298 263 90 21 chrX 39562989 39563240 -137410900 + L1ME4a LINE L1 5795 6099 -22 416 333 58 10 chrX 39563562 39563805 -137410335 + MER115 DNA AcHobo 87 376 -317 338 264 120 16 chrX 39563960 39564085 -137410055 + MIR SINE MIR 48 185 -77 527 256 106 6 chrX 39564093 39564253 -137409887 + MIR SINE MIR 11 186 -76 524 209 37 96 chrX 39564371 39564558 -137409582 + L2 LINE L2 3103 3278 -35 974 138 0 88 chrX 39564574 39564755 -137409385 + FRAM SINE Alu 1 157 -19 1416 183 133 0 chrX 39564801 39565064 -137409076 + AluJb SINE Alu 1 298 -14 1662 203 7 0 chrX 39565070 39565361 -137408779 + AluJo SINE Alu 5 297 -15 2230 115 3 0 chrX 39565664 39565959 -137408181 + AluSq SINE Alu 1 296 -17 2411 70 0 23 chrX 39565994 39566294 -137407846 + AluSg1 SINE Alu 1 293 -16 626 244 14 34 chrX 39767152 39767361 -137206779 - L2 LINE L2 -338 2976 2772 489 227 66 58 chrX 39767367 39767553 -137206587 + MIR3 SINE MIR 3 185 -62 275 306 14 0 chrX 39767600 39767672 -137206468 - MIR3 SINE MIR -28 180 108 183 239 0 0 chrX 39767884 39767930 -137206210 + (TG)n Simple_repeat Simple_repeat 2 47 0 287 306 93 72 chrX 39768317 39768510 -137205630 + MIR SINE MIR 59 255 -7 561 263 190 5 chrX 39768938 39769143 -137204997 - MIR SINE MIR -19 243 1 453 324 45 11 chrX 39769596 39769772 -137204368 + MIR3 SINE MIR 20 201 -7 2243 106 0 0 chrX 39769912 39770234 -137203906 - AluSx SINE Alu 0 322 1 2573 74 0 0 chrX 39770434 39770744 -137203396 + AluY SINE Alu 1 310 -1 2453 71 7 0 chrX 39771150 39771445 -137202695 - AluSx SINE Alu -15 297 1 2264 117 0 3 chrX 39771672 39771972 -137202168 - AluSx SINE Alu -13 299 1 1438 155 0 5 chrX 39772116 39772329 -137201811 - AluSg/x SINE Alu -17 295 84 3519 253 62 78 chrX 39772330 39772447 -137201693 - HAL1 LINE L1 -358 2149 2032 2058 145 17 0 chrX 39772447 39772737 -137201403 - AluJb SINE Alu -17 295 1 3519 253 62 78 chrX 39772737 39772958 -137201182 - HAL1 LINE L1 -475 2032 1809 2318 107 0 0 chrX 39772958 39773258 -137200882 + AluSx SINE Alu 1 300 -12 3519 253 62 78 chrX 39773258 39774188 -137199952 - HAL1 LINE L1 -698 1809 865 930 142 0 8 chrX 39774188 39774322 -137199818 - FLAM_C SINE Alu 0 133 1 3519 253 62 78 chrX 39774322 39774868 -137199272 - HAL1 LINE L1 -1642 865 365 1531 174 60 25 chrX 39774868 39775031 -137199109 - AluJo SINE Alu -19 293 114 216 0 0 0 chrX 39775031 39775055 -137199085 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1531 174 60 25 chrX 39775055 39775172 -137198968 - AluJo SINE Alu -198 114 3 3519 253 62 78 chrX 39775172 39775297 -137198843 - HAL1 LINE L1 -2142 365 239 233 349 47 0 chrX 39775312 39775418 -137198722 - HAL1 LINE L1 -2394 113 3 622 266 44 92 chrX 39775418 39775734 -137198406 + L2 LINE L2 2972 3272 0 292 266 90 21 chrX 39775955 39776206 -137197934 + L1ME4a LINE L1 5795 6099 -22 363 369 30 12 chrX 39776528 39776696 -137197444 + MER115 DNA AcHobo 87 257 -436 367 264 120 16 chrX 39776926 39777051 -137197089 + MIR SINE MIR 48 185 -77 562 239 85 65 chrX 39777059 39777260 -137196880 + MIR SINE MIR 11 215 -47 558 203 37 96 chrX 39777337 39777524 -137196616 + L2 LINE L2 3103 3278 -35 960 139 0 89 chrX 39777540 39777720 -137196420 + FRAM SINE Alu 1 156 -20 1408 183 133 0 chrX 39777766 39778029 -137196111 + AluJb SINE Alu 1 298 -14 1648 203 7 0 chrX 39778035 39778326 -137195814 + AluJo SINE Alu 5 297 -15 2219 115 3 0 chrX 39778629 39778924 -137195216 + AluSq SINE Alu 1 296 -17 2401 70 0 23 chrX 39778959 39779259 -137194881 + AluSg1 SINE Alu 1 293 -16 192 158 0 0 chrX 39779601 39779639 -137194501 + (ATG)n Simple_repeat Simple_repeat 3 40 0 2366 120 0 0 chrX 39780021 39780329 -137193811 - AluSx SINE Alu -4 308 1 2060 130 14 3 chrX 39780329 39780621 -137193519 - AluJo SINE Alu -17 295 1 604 325 54 6 chrX 39780680 39780846 -137193294 - MIR SINE MIR -77 185 12 265 257 76 0 chrX 39781399 39781504 -137192636 - MIR SINE MIR -60 148 36 1076 81 0 54 chrX 39782368 39782551 -137191589 - FLAM_C SINE Alu 0 175 1 316 299 0 35 chrX 39782587 39782731 -137191409 + HAL1 LINE L1 1164 1302 -1205 1987 124 64 0 chrX 39782732 39783014 -137191126 + AluSx SINE Alu 1 300 -12 2074 109 81 0 chrX 39783014 39783299 -137190841 + AluSx SINE Alu 1 308 -4 273 206 16 127 chrX 39783363 39783489 -137190651 + L1ME3A LINE L1 6054 6165 -5 312 239 9 55 chrX 39783498 39783607 -137190533 + HAL1 LINE L1 2050 2153 -354 331 244 46 71 chrX 39783660 39783857 -137190283 + HAL1b LINE L1 746 937 -411 1929 166 0 19 chrX 39783924 39784232 -137189908 + AluJo SINE Alu 1 302 -10 526 216 98 52 chrX 39784232 39784511 -137189629 + HAL1 LINE L1 2203 2497 -10 1886 161 19 19 chrX 39785217 39785528 -137188612 + AluJo SINE Alu 2 312 0 392 306 67 15 chrX 39785546 39785680 -137188460 - MIR SINE MIR -101 161 21 2570 71 3 6 chrX 39785950 39786281 -137187859 + AluSx SINE Alu 3 332 0 440 275 22 14 chrX 39786332 39786470 -137187670 + MIR3 SINE MIR 66 204 -4 238 323 165 8 chrX 39786573 39786700 -137187440 + L2 LINE L2 2562 2708 -606 2286 121 0 9 chrX 39786762 39787077 -137187063 + AluSx SINE Alu 1 312 0 581 226 43 154 chrX 39787254 39787604 -137186536 + L2 LINE L2 2925 3235 -37 269 305 126 11 chrX 39787717 39787812 -137186328 - MIR SINE MIR 0 262 157 285 221 22 0 chrX 39788417 39788494 -137185646 - MIR SINE MIR -76 132 82 220 313 15 0 chrX 39788970 39789037 -137185103 + MIR3 SINE MIR 141 208 0 757 210 0 7 chrX 39789124 39789262 -137184878 - FRAM SINE Alu -16 160 24 207 250 125 0 chrX 39789372 39789428 -137184712 - L2 LINE L2 0 3313 3251 261 257 27 14 chrX 39789447 39789521 -137184619 + L2 LINE L2 3198 3272 0 366 268 157 33 chrX 39790127 39790237 -137183903 + MIR SINE MIR 25 161 -101 2224 108 20 0 chrX 39790237 39790532 -137183608 + AluSq SINE Alu 1 301 -12 366 268 157 33 chrX 39790532 39790574 -137183566 + MIR SINE MIR 161 196 -66 1173 203 0 64 chrX 39790590 39790856 -137183284 + MIR SINE MIR 14 262 0 898 182 122 66 chrX 39791681 39791967 -137182173 + AluJo SINE Alu 1 302 0 282 284 95 35 chrX 39792595 39792711 -137181429 + MIR SINE MIR 66 188 -74 550 251 20 29 chrX 39793201 39793380 -137180760 + MIR SINE MIR 20 198 -64 408 304 92 56 chrX 39793621 39793980 -137180160 - L3 LINE CR1 -3 1574 1203 629 256 16 31 chrX 39794439 39794630 -137179510 - MIR3 SINE MIR -1 207 20 23 54 0 0 chrX 39795705 39795742 -137178398 + GC_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chrX 39796217 39796247 -137177893 + GC_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chrX 39796531 39796572 -137177568 + GC_rich Low_complexity Low_complexity 1 41 0 242 330 9 0 chrX 39796955 39797061 -137177079 + C-rich Low_complexity Low_complexity 6 112 0 225 299 0 0 chrX 39797117 39797261 -137176879 + C-rich Low_complexity Low_complexity 1 144 0 328 369 0 0 chrX 39797576 39797736 -137176404 + C-rich Low_complexity Low_complexity 1 160 0 405 182 0 61 chrX 39797841 39797940 -137176200 + L1MC2 LINE L1 4235 4327 -1819 914 98 16 0 chrX 39797941 39798063 -137176077 - FLAM_C SINE Alu -2 141 18 3105 214 17 12 chrX 39798070 39798384 -137175756 + L1MC2 LINE L1 4321 4632 -1514 2383 102 0 0 chrX 39798384 39798687 -137175453 - AluSg SINE Alu -7 303 1 3105 214 17 12 chrX 39798687 39799135 -137175005 + L1MC2 LINE L1 4632 5087 -1059 1342 175 5 5 chrX 39799136 39799359 -137174781 - AluSg/x SINE Alu -5 307 85 925 200 9 5 chrX 39799359 39799574 -137174566 + L1MC2 LINE L1 5082 5297 -849 802 193 0 0 chrX 39799576 39799711 -137174429 + FLAM_C SINE Alu 3 137 -6 2302 96 0 3 chrX 39799711 39800002 -137174138 - AluSg SINE Alu -20 290 1 4014 139 57 27 chrX 39800015 39800747 -137173393 + L1MC2 LINE L1 5269 6002 -164 1823 97 120 4 chrX 39800747 39801005 -137173135 - AluSg1 SINE Alu -15 294 7 4014 139 57 27 chrX 39801005 39801174 -137172966 + L1MC2 LINE L1 6002 6165 -1 243 253 13 0 chrX 39801182 39801257 -137172883 + L1MC4 LINE L1 7416 7491 -551 897 122 0 43 chrX 39801267 39801406 -137172734 - FLAM_C SINE Alu 0 133 1 465 303 73 44 chrX 39801407 39801589 -137172551 + L1MC4 LINE L1 7311 7486 -556 2507 69 3 3 chrX 39801589 39801893 -137172247 + AluSp SINE Alu 1 304 -9 465 303 73 44 chrX 39801893 39802194 -137171946 + L1MC4 LINE L1 7486 7916 -126 1715 148 112 7 chrX 39802476 39802753 -137171387 - AluSg SINE Alu -2 308 3 1778 169 7 0 chrX 39802763 39803053 -137171087 - AluJo SINE Alu -20 292 1 24 96 0 0 chrX 39803372 39803445 -137170695 + AT_rich Low_complexity Low_complexity 1 73 0 3149 93 7 2 chrX 39803532 39803963 -137170177 - L1PA8A LINE L1 -2 6129 5697 3245 80 14 0 chrX 39803963 39804701 -137169439 + L1PA8A LINE L1 4960 5704 -427 332 294 196 0 chrX 39804903 39805066 -137169074 + MIR SINE MIR 33 227 -35 24 0 0 0 chrX 39805268 39805292 -137168848 + AT_rich Low_complexity Low_complexity 1 24 0 267 167 0 83 chrX 39806679 39806775 -137167365 + C-rich Low_complexity Low_complexity 6 93 0 247 258 39 90 chrX 39807446 39807586 -137166554 + L2 LINE L2 2945 3078 -194 189 0 0 0 chrX 39807586 39807607 -137166533 + (TC)n Simple_repeat Simple_repeat 1 21 0 247 258 39 90 chrX 39807607 39807621 -137166519 + L2 LINE L2 3078 3091 -181 1116 141 41 0 chrX 39807910 39808169 -137165971 + L1MB7 LINE L1 5196 5463 -711 462 18 0 0 chrX 39809153 39809208 -137164932 + (CA)n Simple_repeat Simple_repeat 2 56 0 4318 131 9 48 chrX 39809208 39809833 -137164307 + L1MB7 LINE L1 5439 6030 -154 891 72 0 0 chrX 39809833 39809944 -137164196 + HY1 scRNA scRNA 1 111 -1 4318 131 9 48 chrX 39809944 39810094 -137164046 + L1MB7 LINE L1 6030 6184 0 1049 173 11 6 chrX 39810135 39810314 -137163826 - MIR SINE MIR -2 260 81 201 194 0 0 chrX 39810371 39810407 -137163733 + MIR SINE MIR 217 252 -10 475 266 65 35 chrX 39810557 39810726 -137163414 - L2 LINE L2 -4 3309 3136 1641 222 57 16 chrX 39810730 39811172 -137162968 + MLT1C LTR MaLR 8 467 0 198 301 44 53 chrX 39811211 39811324 -137162816 - L2 LINE L2 -56 3257 3146 237 324 27 0 chrX 39811638 39811712 -137162428 - L2 LINE L2 -523 2791 2716 2003 119 49 0 chrX 39812161 39812447 -137161693 + AluSx SINE Alu 1 300 -12 311 148 182 34 chrX 39812475 39812563 -137161577 - MIR3 SINE MIR -15 193 93 1017 272 118 37 chrX 39813234 39813590 -137160550 + L3 LINE CR1 1148 1538 -39 2008 152 10 7 chrX 39813590 39813892 -137160248 + AluJb SINE Alu 1 303 -9 1017 272 118 37 chrX 39813892 39813917 -137160223 + L3 LINE CR1 1538 1560 -17 508 232 0 0 chrX 39814211 39814310 -137159830 - MIR3 SINE MIR -15 193 95 279 306 16 58 chrX 39814331 39814452 -137159688 + L3 LINE CR1 1423 1538 -39 1314 174 15 0 chrX 39814453 39814654 -137159486 + AluJo SINE Alu 1 204 -108 329 234 140 19 chrX 39814833 39814940 -137159200 - L2 LINE L2 0 3313 3194 * 649 257 64 98 chrX 39814937 39815326 -137158814 + L2 LINE L2 2897 3272 0 2324 96 7 0 chrX 39815408 39815710 -137158430 - AluSp SINE Alu -9 304 1 2473 69 7 3 chrX 39816084 39816387 -137157753 + AluSx SINE Alu 1 304 -8 351 150 0 0 chrX 39816485 39816545 -137157595 + (TAA)n Simple_repeat Simple_repeat 1 60 0 351 230 81 11 chrX 39816567 39816654 -137157486 - MER81 DNA DNA -2 112 20 391 269 72 109 chrX 39816746 39816939 -137157201 - MIR3 SINE MIR -22 186 1 189 160 368 56 chrX 39818091 39818113 -137156027 + L3 LINE CR1 1078 1092 -485 186 43 0 0 chrX 39818113 39818136 -137156004 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 189 160 368 56 chrX 39818136 39818238 -137155902 + L3 LINE CR1 1092 1241 -336 * 239 313 131 0 chrX 39818222 39818321 -137155819 - MIR3 SINE MIR 0 208 97 320 322 0 0 chrX 39818321 39818411 -137155729 + L3 LINE CR1 1265 1354 -223 1908 114 4 0 chrX 39818411 39818704 -137155436 - AluSq SINE Alu 0 304 11 753 282 34 56 chrX 39818721 39818970 -137155170 - L1M4 LINE L1 -1940 4206 3966 1813 137 34 3 chrX 39818970 39819263 -137154877 - AluJb SINE Alu -10 302 1 753 282 34 56 chrX 39819263 39819368 -137154772 - L1M4 LINE L1 -2180 3966 3860 342 307 8 39 chrX 39819368 39819495 -137154645 + L3 LINE CR1 1344 1466 -111 1109 275 87 53 chrX 39819515 39820247 -137153893 - L2 LINE L2 -35 3278 2530 1498 179 5 73 chrX 39820251 39820403 -137153737 + L1M4 LINE L1 2612 2773 -3373 1652 168 3 32 chrX 39820403 39820718 -137153422 + AluJo SINE Alu 1 306 -6 1498 179 5 73 chrX 39820718 39820791 -137153349 + L1M4 LINE L1 2773 2849 -3297 2092 117 3 7 chrX 39820791 39821100 -137153040 + AluSx SINE Alu 3 310 -2 1498 179 5 73 chrX 39821100 39821269 -137152871 + L1M4 LINE L1 2849 2980 -3166 1226 210 61 66 chrX 39821267 39821431 -137152709 + L1M4 LINE L1 4233 4396 -1750 * 738 181 8 8 chrX 39821431 39821564 -137152576 - FLAM_C SINE Alu 0 133 1 2248 97 0 3 chrX 39821564 39821864 -137152276 - AluSx SINE Alu -13 299 1 1226 210 61 66 chrX 39821864 39822194 -137151946 + L1M4 LINE L1 4394 4774 -1372 1465 194 57 57 chrX 39822200 39822551 -137151589 - MER21B LTR ERV1 0 863 513 2210 96 0 7 chrX 39822643 39822973 -137151167 - AluSc SINE Alu 0 329 2 2703 183 45 11 chrX 39823310 39823780 -137150360 - MER21B LTR ERV1 -376 487 2 273 169 99 0 chrX 39823827 39823898 -137150242 - L2 LINE L2 -774 2540 2463 228 368 0 0 chrX 39824265 39824341 -137149799 + GA-rich Low_complexity Low_complexity 2 77 0 1372 313 35 16 chrX 39824754 39825121 -137149019 - L2 LINE L2 -778 2536 2153 3207 138 16 30 chrX 39825121 39825339 -137148801 + MER89 LTR ERV1 1 221 -338 2271 96 0 0 chrX 39825339 39825640 -137148500 + AluSx SINE Alu 1 301 -11 3207 138 16 30 chrX 39825640 39825988 -137148152 + MER89 LTR ERV1 221 559 0 1372 313 35 16 chrX 39825988 39826185 -137147955 - L2 LINE L2 -1161 2153 1961 689 112 207 9 chrX 39826886 39827002 -137147138 + AluJ SINE Alu 5 143 -169 456 289 103 40 chrX 39827041 39827497 -137146643 - L1 LINE L1 -1164 4982 4498 856 226 0 0 chrX 39827514 39827673 -137146467 + AluJ SINE Alu 137 295 -7 2141 101 3 0 chrX 39827676 39827973 -137146167 + AluSx SINE Alu 1 298 -14 2388 74 0 0 chrX 39828044 39828342 -137145798 - AluSg SINE Alu -12 298 1 1685 164 35 0 chrX 39828468 39828588 -137145552 + AluJo SINE Alu 1 115 -197 216 0 0 0 chrX 39828588 39828612 -137145528 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1685 164 35 0 chrX 39828612 39828778 -137145362 + AluJo SINE Alu 115 297 -15 1768 173 92 43 chrX 39828819 39828883 -137145257 - MLT1E LTR MaLR 0 593 534 2110 106 10 13 chrX 39828883 39829194 -137144946 + AluSq SINE Alu 1 310 -3 1768 173 92 43 chrX 39829194 39829499 -137144641 - MLT1E LTR MaLR -59 534 206 1644 136 0 121 chrX 39829539 39829893 -137144247 - AluJo SINE Alu 0 302 1 2364 47 3 7 chrX 39829904 39830203 -137143937 - AluY SINE Alu -9 302 5 469 184 29 10 chrX 39830211 39830314 -137143826 + MLT1E LTR MaLR 56 160 -433 436 148 14 169 chrX 39830322 39830391 -137143749 - MLT1E LTR MaLR -473 120 81 2236 82 0 0 chrX 39830391 39830709 -137143431 + AluSq SINE Alu 1 318 0 436 148 14 169 chrX 39830709 39830780 -137143360 - MLT1E LTR MaLR -512 81 1 2324 88 3 0 chrX 39830937 39831244 -137142896 - AluSx SINE Alu -2 310 3 1582 132 12 96 chrX 39831333 39831667 -137142473 + AluJo SINE Alu 1 306 -6 409 292 187 0 chrX 39831732 39831872 -137142268 - MIR SINE MIR -72 136 28 2281 77 0 13 chrX 39831958 39832309 -137141831 - AluSg SINE Alu 0 310 1 399 277 30 10 chrX 39832361 39832462 -137141678 + MIR SINE MIR 156 258 -4 5131 181 48 80 chrX 39832722 39834046 -137140094 + L1MC4 LINE L1 6762 8042 0 1703 120 101 0 chrX 39834091 39834367 -137139773 + AluSx SINE Alu 1 304 -8 1591 162 37 0 chrX 39834367 39834636 -137139504 + AluJb SINE Alu 27 307 -5 2286 96 3 3 chrX 39834636 39834948 -137139192 + AluSq SINE Alu 1 313 0 3213 221 19 60 chrX 39834956 39835265 -137138875 + L1MC2 LINE L1 4015 4335 -1811 838 107 16 0 chrX 39835265 39835387 -137138753 - FLAM_C SINE Alu -2 141 18 3213 221 19 60 chrX 39835387 39835713 -137138427 + L1MC2 LINE L1 4335 4673 -1473 2238 97 0 0 chrX 39835713 39836011 -137138129 - AluSg SINE Alu -12 298 1 3213 221 19 60 chrX 39836011 39836459 -137137681 + L1MC2 LINE L1 4673 5087 -1059 1227 175 5 5 chrX 39836460 39836683 -137137457 - AluSg/x SINE Alu -5 307 85 967 200 9 5 chrX 39836683 39836898 -137137242 + L1MC2 LINE L1 5082 5297 -849 785 181 0 8 chrX 39836900 39837033 -137137107 + AluJo SINE Alu 3 134 -178 2158 96 0 3 chrX 39837035 39837326 -137136814 - AluSg SINE Alu -20 290 1 5837 122 58 36 chrX 39837339 39838071 -137136069 + L1MC2 LINE L1 5269 5983 -361 1759 98 117 4 chrX 39838071 39838336 -137135804 - AluSg1 SINE Alu -14 295 1 5837 122 58 36 chrX 39838336 39838491 -137135649 + L1MC2 LINE L1 5983 6133 -211 2151 96 0 0 chrX 39838491 39838823 -137135317 + AluSg SINE Alu 1 332 0 5837 122 58 36 chrX 39838823 39838971 -137135169 + L1MC2 LINE L1 6133 6329 -15 1654 161 68 0 chrX 39838972 39839264 -137134876 + AluJb SINE Alu 1 312 0 1131 172 22 22 chrX 39839285 39839517 -137134623 + L1MB7 LINE L1 5813 6044 -140 2105 134 50 22 chrX 39839517 39839875 -137134265 + THE1C LTR MaLR 1 368 -7 815 108 0 8 chrX 39839886 39840016 -137134124 + L1MB8 LINE L1 6049 6177 -1 271 224 207 0 chrX 39840427 39840543 -137133597 + L1ME4a LINE L1 5781 5920 -201 233 211 105 0 chrX 39840561 39840618 -137133522 + L1ME4a LINE L1 5963 6025 -96 1660 172 0 10 chrX 39840855 39841146 -137132994 - AluJb SINE Alu -24 288 1 189 0 0 0 chrX 39841146 39841167 -137132973 + (T)n Simple_repeat Simple_repeat 1 21 0 457 200 10 40 chrX 39841412 39841512 -137132628 + MIR SINE MIR 75 171 -91 430 297 131 57 chrX 39841758 39842508 -137131632 - L2 LINE L2 -4 3268 2459 282 238 60 24 chrX 39842675 39842759 -137131381 + MIR3 SINE MIR 77 163 -45 248 260 23 141 chrX 39843143 39843320 -137130820 + MIR3 SINE MIR 49 204 -4 372 306 18 0 chrX 39843344 39843455 -137130685 + MIR3 SINE MIR 62 174 -34 1230 87 6 0 chrX 39843880 39844052 -137130088 + AluSg/x SINE Alu 127 299 -11 351 280 40 124 chrX 39844066 39844265 -137129875 - MIR SINE MIR -14 248 73 2421 62 0 10 chrX 39844265 39844571 -137129569 + AluSq SINE Alu 1 303 -10 351 280 40 124 chrX 39844571 39844621 -137129519 - MIR SINE MIR -189 73 20 439 286 135 70 chrX 39844701 39845057 -137129083 + HAL1 LINE L1 2 380 -2127 835 139 0 29 chrX 39845311 39845448 -137128692 - AluJb SINE Alu -179 133 1 2144 98 0 7 chrX 39845485 39845781 -137128359 + AluSx SINE Alu 1 294 -18 2435 40 0 7 chrX 39845783 39846084 -137128056 + AluY SINE Alu 1 299 -12 438 238 164 71 chrX 39846092 39846436 -137127704 + HAL1 LINE L1 1935 2318 -189 2108 120 0 0 chrX 39846436 39846737 -137127403 + AluSx SINE Alu 1 301 -11 438 238 164 71 chrX 39846737 39846770 -137127370 + HAL1 LINE L1 2318 2347 -160 771 281 70 65 chrX 39846787 39847190 -137126950 - MLT1L LTR MaLR -17 598 89 352 274 33 46 chrX 39847198 39847351 -137126789 + HAL1 LINE L1 2357 2507 0 2133 120 0 0 chrX 39847355 39847655 -137126485 + AluSx SINE Alu 1 300 -12 23 0 0 0 chrX 39847655 39847678 -137126462 + AT_rich Low_complexity Low_complexity 1 23 0 412 299 65 19 chrX 39847896 39848050 -137126090 + MIR SINE MIR 9 169 -93 201 250 42 0 chrX 39848034 39848082 -137126058 + L2 LINE L2 3263 3312 -1 * 1686 230 123 33 chrX 39848880 39849549 -137124591 + HAL1 LINE L1 993 1721 -786 2085 95 0 3 chrX 39849557 39849841 -137124299 + AluSc SINE Alu 1 283 -26 1750 118 0 4 chrX 39849841 39850085 -137124055 - AluSp SINE Alu -68 245 1 233 186 169 17 chrX 39850086 39850145 -137123995 - LTR67 LTR ERVL -58 499 432 987 290 68 54 chrX 39850442 39851266 -137122874 - L1ME3A LINE L1 -230 5940 5256 1089 279 97 36 chrX 39851609 39852085 -137122055 - MLT1K LTR MaLR -3 585 81 1136 205 184 21 chrX 39852112 39852493 -137121647 + HAL1 LINE L1 1710 2152 -355 234 157 59 0 chrX 39852544 39852595 -137121545 + HAL1b LINE L1 746 799 -549 461 186 0 143 chrX 39852728 39852799 -137121341 + HAL1 LINE L1 2265 2308 -199 2389 87 0 0 chrX 39852799 39853111 -137121029 + AluSx SINE Alu 1 312 0 461 186 0 143 chrX 39853111 39853179 -137120961 + HAL1 LINE L1 2308 2384 -123 1766 263 61 83 chrX 39853186 39854448 -137119692 + HAL1 LINE L1 1 1427 -1080 2300 68 0 7 chrX 39854470 39854801 -137119339 + AluSq SINE Alu 1 313 0 3301 204 73 10 chrX 39854810 39855863 -137118277 + L1MDa LINE L1 31 1558 -4982 1049 252 140 49 chrX 39855839 39856034 -137118106 + HAL1 LINE L1 1828 2004 -897 * 1628 79 0 0 chrX 39856034 39856248 -137117892 + AluY SINE Alu 82 295 -16 1049 252 140 49 chrX 39856248 39856702 -137117438 + HAL1 LINE L1 2004 2536 -365 372 285 112 42 chrX 39856735 39856949 -137117191 + HAL1b LINE L1 715 943 -405 364 248 106 93 chrX 39857003 39857249 -137116891 + HAL1 LINE L1 2245 2493 -14 285 313 85 59 chrX 39857377 39857649 -137116491 + L2 LINE L2 2841 3119 -153 2213 100 3 0 chrX 39857664 39857965 -137116175 - AluSx SINE Alu -9 303 2 333 109 0 0 chrX 39857988 39858043 -137116097 - AluSx SINE Alu -1 300 246 1544 94 0 19 chrX 39858043 39858119 -137116021 - AluSx SINE Alu -103 209 133 2185 100 0 0 chrX 39858119 39858419 -137115721 - AluSq SINE Alu -13 300 1 1544 94 0 19 chrX 39858419 39858555 -137115585 - AluSx SINE Alu -179 133 1 330 311 59 0 chrX 39858584 39858703 -137115437 + L2 LINE L2 2654 2779 -535 506 343 54 43 chrX 39858759 39859129 -137115011 + L2 LINE L2 2899 3272 0 221 296 12 0 chrX 39859134 39859215 -137114925 + (TGAA)n Simple_repeat Simple_repeat 3 84 0 188 196 0 20 chrX 39859241 39859292 -137114848 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 338 238 246 0 chrX 39860625 39860747 -137113393 + MIR3 SINE MIR 42 193 -15 466 265 38 8 chrX 39861288 39861420 -137112720 - L2 LINE L2 0 3272 3137 259 315 56 19 chrX 39861613 39861721 -137112419 + MER5B DNA MER1_type 4 115 -63 678 361 58 27 chrX 39861811 39862224 -137111916 + L2 LINE L2 2827 3252 -20 322 260 29 19 chrX 39862436 39862540 -137111600 + MIR SINE MIR 20 124 -84 208 254 60 15 chrX 39862671 39862738 -137111402 + MER5A DNA MER1_type 96 165 -24 281 191 0 0 chrX 39862843 39862890 -137111250 - MER5B DNA MER1_type -129 49 3 319 266 0 0 chrX 39862938 39863002 -137111138 + MIR3 SINE MIR 108 171 -37 513 233 204 0 chrX 39863015 39863191 -137110949 - MIR SINE MIR -29 233 22 564 272 76 34 chrX 39863432 39863860 -137110280 + L1MC4a LINE L1 5549 5993 -128 868 170 7 13 chrX 39864452 39864605 -137109535 - MIR SINE MIR -89 173 22 397 348 191 12 chrX 39864602 39864858 -137109282 + L2 LINE L2 2971 3272 0 * 269 196 0 0 chrX 39865029 39865080 -137109060 - MER4-int LTR ERV1 -5437 1161 1111 782 247 55 90 chrX 39866718 39867081 -137107059 + L2 LINE L2 2906 3253 -19 437 285 70 47 chrX 39868123 39868337 -137105803 + MIR SINE MIR 20 238 -24 329 267 144 34 chrX 39869066 39869212 -137104928 - L2 LINE L2 -5 3308 3147 2086 154 0 0 chrX 39869566 39869865 -137104275 - AluJb SINE Alu -13 299 1 1715 187 10 0 chrX 39869967 39870256 -137103884 + AluJo SINE Alu 1 292 -20 24 0 0 0 chrX 39870286 39870310 -137103830 + AT_rich Low_complexity Low_complexity 1 24 0 284 375 79 0 chrX 39870357 39870509 -137103631 - L2 LINE L2 -455 2859 2696 237 277 82 61 chrX 39870516 39870558 -137103582 + L1MC4a LINE L1 5825 5865 -1943 2522 50 0 25 chrX 39870558 39870876 -137103264 - AluY SINE Alu -1 310 1 237 277 82 61 chrX 39870876 39871064 -137103076 + L1MC4a LINE L1 5865 6060 -1748 600 268 55 57 chrX 39871129 39872057 -137102083 + L1MC4 LINE L1 7111 8041 -1 2370 80 0 0 chrX 39872309 39872596 -137101544 - AluY SINE Alu -24 287 1 2081 225 37 68 chrX 39872762 39873551 -137100589 + L1MC5 LINE L1 6563 7330 -631 643 163 8 0 chrX 39873552 39873675 -137100465 + Charlie5 DNA MER1_type 1 124 -2488 1865 166 23 8 chrX 39873676 39874018 -137100122 + Charlie5 DNA MER1_type 2234 2584 -40 2519 56 7 7 chrX 39874018 39874322 -137099818 + AluY SINE Alu 1 304 -7 1865 166 23 8 chrX 39874322 39874364 -137099776 + Charlie5 DNA MER1_type 2584 2624 0 248 170 0 0 chrX 39874365 39874412 -137099728 + L1MC5 LINE L1 7331 7377 -584 779 222 63 125 chrX 39874450 39874752 -137099388 + L1MC5 LINE L1 7373 7692 -269 2182 104 7 3 chrX 39874752 39875041 -137099099 + AluSg SINE Alu 2 291 -19 779 222 63 125 chrX 39875041 39875141 -137098999 + L1MC5 LINE L1 7692 7797 -164 2393 88 16 0 chrX 39875141 39875446 -137098694 - AluY SINE Alu -1 310 1 779 222 63 125 chrX 39875446 39875508 -137098632 + L1MC5 LINE L1 7797 7861 -100 2172 111 0 7 chrX 39875508 39875805 -137098335 + AluSg SINE Alu 1 295 -15 779 222 63 125 chrX 39875805 39875929 -137098211 + L1MC5 LINE L1 7861 7926 -35 248 203 17 0 chrX 39875952 39876011 -137098129 + L1MC4 LINE L1 6952 7011 -1031 2304 82 62 0 chrX 39876013 39876305 -137097835 + AluY SINE Alu 1 310 -1 2158 125 0 7 chrX 39876333 39876636 -137097504 + AluSx SINE Alu 1 301 -11 839 152 0 36 chrX 39876638 39876776 -137097364 + FLAM_C SINE Alu 1 133 0 1173 198 169 0 chrX 39876838 39877086 -137097054 - AluSg SINE Alu -10 290 1 23 0 0 0 chrX 39877089 39877112 -137097028 + AT_rich Low_complexity Low_complexity 1 23 0 983 142 9 75 chrX 39877127 39877339 -137096801 - MER20 DNA MER1_type -20 199 2 351 149 90 15 chrX 39877340 39877407 -137096733 - L1MC5 LINE L1 -243 7718 7647 2373 84 6 6 chrX 39877410 39877721 -137096419 + AluY SINE Alu 1 311 0 2330 97 10 0 chrX 39877760 39878049 -137096091 - AluSq SINE Alu -21 292 1 333 91 0 0 chrX 39878098 39878142 -137095998 - Alu SINE Alu -259 44 1 326 136 106 0 chrX 39878271 39878337 -137095803 - L1MC5 LINE L1 -620 7341 7269 1303 216 106 57 chrX 39878342 39879039 -137095101 + L1MC5 LINE L1 7262 7925 -36 318 298 93 58 chrX 39879081 39879176 -137094964 - L2 LINE L2 -676 2638 2548 2374 84 27 10 chrX 39879176 39879475 -137094665 + AluSq SINE Alu 1 304 -9 318 298 93 58 chrX 39879475 39879637 -137094503 - L2 LINE L2 -766 2548 2372 436 291 76 67 chrX 39880309 39880361 -137093779 + MIR SINE MIR 20 70 -192 2234 141 0 0 chrX 39880361 39880673 -137093467 + AluSx SINE Alu 1 312 0 436 291 76 67 chrX 39880673 39880830 -137093310 + MIR SINE MIR 70 231 -31 225 293 40 20 chrX 39882131 39882230 -137091910 - L1ME4a LINE L1 -52 6069 5969 1964 167 0 0 chrX 39882599 39882898 -137091242 + AluJb SINE Alu 1 299 -13 761 193 16 21 chrX 39882903 39883095 -137091045 + L1MC4 LINE L1 7852 8042 0 2120 107 17 7 chrX 39883204 39883504 -137090636 + AluSq SINE Alu 1 303 -10 268 284 128 49 chrX 39884037 39884241 -137089899 - L1ME4a LINE L1 -330 5791 5572 2423 87 0 0 chrX 39884260 39884558 -137089582 + AluSg SINE Alu 1 298 -12 231 299 71 14 chrX 39884605 39884816 -137089324 - L1ME4a LINE L1 -2331 5477 5255 238 150 0 0 chrX 39885053 39885093 -137089047 - L1ME4a LINE L1 -82 6039 6000 744 217 63 24 chrX 39885389 39885596 -137088544 - MIR SINE MIR -46 216 2 850 254 30 9 chrX 39885610 39885829 -137088311 + MIR SINE MIR 36 262 0 377 280 91 59 chrX 39886196 39886514 -137087626 + L2 LINE L2 2776 3093 -179 233 119 24 0 chrX 39887012 39887054 -137087086 + (TA)n Simple_repeat Simple_repeat 2 44 0 397 273 73 17 chrX 39887109 39887270 -137086870 - L1MC/D LINE L1 -739 5431 5264 186 342 144 0 chrX 39887392 39887503 -137086637 + L2 LINE L2 3180 3306 -7 369 182 0 165 chrX 39887558 39887679 -137086461 + L2 LINE L2 3172 3272 0 2312 86 13 29 chrX 39887886 39888199 -137085941 + AluSg SINE Alu 1 308 -2 1622 124 60 74 chrX 39888211 39888509 -137085631 + AluJb SINE Alu 13 306 -6 512 249 113 49 chrX 39888538 39888723 -137085417 - MIR SINE MIR -65 197 1 421 209 43 74 chrX 39889452 39889615 -137084525 - MER46C DNA MER2_type -1 337 180 402 187 72 191 chrX 39889755 39889812 -137084328 - MIR SINE MIR -45 217 155 1766 83 43 4 chrX 39889812 39890042 -137084098 - AluSx SINE Alu -18 294 56 402 187 72 191 chrX 39890042 39890193 -137083947 - MIR SINE MIR -107 155 34 2433 122 60 58 chrX 39891376 39891419 -137082721 + MER21B-int LTR ERV1 3662 3703 -488 774 221 0 0 chrX 39891419 39891550 -137082590 + FLAM_A SINE Alu 2 132 -1 2433 122 60 58 chrX 39891550 39891975 -137082165 + MER21B-int LTR ERV1 3703 4131 -60 2341 98 0 0 chrX 39892012 39892309 -137081831 - AluSx SINE Alu -14 298 2 4288 160 120 10 chrX 39892373 39893150 -137080990 + MER21B LTR ERV1 1 862 -1 205 245 61 0 chrX 39893290 39893339 -137080801 - MIR SINE MIR -36 226 175 2245 101 0 7 chrX 39893359 39893645 -137080495 + AluSx SINE Alu 1 284 -28 216 0 0 0 chrX 39893645 39893669 -137080471 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 192 40 0 0 chrX 39894147 39894172 -137079968 + (A)n Simple_repeat Simple_repeat 1 25 0 336 322 124 11 chrX 39894172 39894349 -137079791 + MIR SINE MIR 20 216 -46 248 110 44 80 chrX 39895097 39895147 -137078993 + MIR SINE MIR 104 150 -61 506 125 10 62 chrX 39895226 39895322 -137078818 - AluJo SINE Alu -177 135 45 741 247 100 68 chrX 39895442 39895524 -137078616 + MIR SINE MIR 3 81 -181 1526 189 3 36 chrX 39895524 39895658 -137078482 + AluJb SINE Alu 1 138 -164 1830 107 0 81 chrX 39895658 39895829 -137078311 + AluSx SINE Alu 39 177 -135 2393 99 0 3 chrX 39895829 39896142 -137077998 + AluSq SINE Alu 1 312 -1 1830 107 0 81 chrX 39896142 39896268 -137077872 + AluSx SINE Alu 177 312 0 1526 189 3 36 chrX 39896268 39896439 -137077701 + AluJb SINE Alu 138 296 -6 741 247 100 68 chrX 39896439 39896607 -137077533 + MIR SINE MIR 81 261 -1 2362 106 7 0 chrX 39896640 39896943 -137077197 + AluSg SINE Alu 1 305 -5 422 179 2 4 chrX 39896954 39897038 -137077102 - Tigger4(Zombi) DNA MER2_type 0 2731 2 229 200 0 36 chrX 39896991 39897046 -137077094 + MER46A DNA MER2_type 99 151 -85 * 291 271 0 25 chrX 39898234 39898352 -137075788 + CT-rich Low_complexity Low_complexity 5 119 0 2418 97 6 0 chrX 39899125 39899436 -137074704 + AluSq SINE Alu 1 313 0 998 189 5 21 chrX 39899653 39899843 -137074297 - MER5A DNA MER1_type 0 189 3 1921 114 77 0 chrX 39900741 39901014 -137073126 + AluSx SINE Alu 7 300 -12 1147 160 6 0 chrX 39901014 39901189 -137072951 + AluJo/FRAM SINE Alu 134 309 -3 2523 86 0 3 chrX 39901350 39901663 -137072477 + AluSx SINE Alu 1 312 0 23 54 0 0 chrX 39901663 39901700 -137072440 + AT_rich Low_complexity Low_complexity 1 37 0 1111 94 26 42 chrX 39901700 39901726 -137072414 + L1MB2 LINE L1 5984 6009 -162 2300 105 0 3 chrX 39901726 39902020 -137072120 - AluSc SINE Alu -16 293 1 1111 94 26 42 chrX 39902020 39902184 -137071956 + L1MB2 LINE L1 6009 6171 0 243 253 13 0 chrX 39902192 39902267 -137071873 + L1MC4 LINE L1 7416 7491 -551 897 122 0 43 chrX 39902277 39902416 -137071724 - FLAM_C SINE Alu 0 133 1 465 303 73 44 chrX 39902417 39902599 -137071541 + L1MC4 LINE L1 7311 7486 -556 2507 69 3 3 chrX 39902599 39902903 -137071237 + AluSp SINE Alu 1 304 -9 465 303 73 44 chrX 39902903 39903204 -137070936 + L1MC4 LINE L1 7486 7916 -126 1602 163 112 7 chrX 39903486 39903763 -137070377 - AluSg SINE Alu -2 308 3 1600 189 7 0 chrX 39903782 39904063 -137070077 - AluJo SINE Alu -29 283 1 2486 82 7 0 chrX 39904091 39904395 -137069745 + AluSx SINE Alu 1 306 -6 1856 185 0 0 chrX 39904575 39904872 -137069268 + AluJb SINE Alu 1 297 -15 2424 94 0 0 chrX 39904874 39905182 -137068958 + AluSg SINE Alu 1 308 -2 651 147 0 0 chrX 39905182 39905277 -137068863 + AluSg/x SINE Alu 193 287 -25 365 258 52 0 chrX 39905460 39905557 -137068583 + MIR SINE MIR 88 189 -73 2172 132 7 0 chrX 39905572 39905882 -137068258 + AluSx SINE Alu 1 312 0 973 197 6 0 chrX 39906566 39906744 -137067396 + MER20 DNA MER1_type 39 217 -2 529 290 102 28 chrX 39906917 39907172 -137066968 + L2 LINE L2 3040 3313 0 21 0 0 0 chrX 39907594 39907615 -137066525 + GC_rich Low_complexity Low_complexity 1 21 0 1615 178 20 14 chrX 39909123 39909416 -137064724 + AluJb SINE Alu 1 295 -17 1396 154 0 9 chrX 39909570 39909791 -137064349 + AluJo SINE Alu 87 305 -7 1532 82 5 10 chrX 39909795 39909990 -137064150 - AluSg SINE Alu -116 194 1 31 0 0 0 chrX 39909990 39910021 -137064119 + AT_rich Low_complexity Low_complexity 1 31 0 383 181 0 0 chrX 39910040 39910112 -137064028 + L1 LINE L1 4943 5014 -1132 781 143 67 0 chrX 39910114 39910233 -137063907 + FLAM_C SINE Alu 2 128 -5 1130 98 7 0 chrX 39910241 39910384 -137063756 + AluY SINE Alu 1 144 -167 784 294 87 7 chrX 39910456 39910744 -137063396 - L2 LINE L2 -290 2982 2675 225 0 0 0 chrX 39910845 39910870 -137063270 + (A)n Simple_repeat Simple_repeat 1 25 0 395 267 316 20 chrX 39910879 39911126 -137063014 - L2 LINE L2 -601 2713 2394 535 315 59 69 chrX 39911126 39911501 -137062639 - L2 LINE L2 -433 2881 2511 2008 145 7 0 chrX 39912034 39912316 -137061824 + AluSx SINE Alu 3 286 -26 228 148 0 115 chrX 39912377 39912438 -137061702 + L1MC4a LINE L1 6075 6128 -1680 386 279 7 68 chrX 39912503 39912650 -137061490 + MIR SINE MIR 9 146 -62 855 296 140 17 chrX 39912770 39913242 -137060898 - L2 LINE L2 -13 3259 2734 514 147 78 0 chrX 39914203 39914305 -137059835 + MIR SINE MIR 63 172 -90 251 259 24 106 chrX 39914320 39914405 -137059735 + L2 LINE L2 3121 3198 -74 233 345 44 0 chrX 39914476 39914589 -137059551 + L2 LINE L2 3165 3282 -31 * 299 173 0 0 chrX 39914569 39914621 -137059519 - L2 LINE L2 -354 2918 2867 387 321 129 13 chrX 39914630 39914894 -137059246 + L2 LINE L2 2929 3227 -45 380 293 0 0 chrX 39914897 39914979 -137059161 - MIR SINE MIR -81 127 46 2221 104 14 0 chrX 39917896 39918185 -137055955 + AluSx SINE Alu 1 293 -19 2328 100 0 19 chrX 39918334 39918643 -137055497 + AluSx SINE Alu 1 303 -9 180 244 39 118 chrX 39918823 39918950 -137055190 - L3 LINE CR1 -38 1539 1423 344 103 17 0 chrX 39919423 39919481 -137054659 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 283 278 61 35 chrX 39920046 39920161 -137053979 - L2 LINE L2 -32 3240 3123 820 283 197 25 chrX 39920845 39921095 -137053045 + L2 LINE L2 2838 3044 -269 866 188 40 143 chrX 39921095 39921472 -137052668 - MER46C DNA MER2_type 0 338 1 820 283 197 25 chrX 39921472 39921627 -137052513 + L2 LINE L2 3044 3313 0 2262 92 14 3 chrX 39921852 39922147 -137051993 - AluSx SINE Alu -14 298 1 816 202 35 40 chrX 39922148 39922346 -137051794 + MIR SINE MIR 62 258 -4 1854 206 81 4 chrX 39922361 39922818 -137051322 - Charlie4a DNA MER1_type 0 508 17 191 299 52 31 chrX 39923013 39923110 -137051030 + L2 LINE L2 1528 1626 -1688 871 167 0 0 chrX 39923150 39923282 -137050858 + FLAM_C SINE Alu 1 132 -11 711 298 256 13 chrX 39923854 39924556 -137049584 + L2 LINE L2 1891 2763 -551 2449 71 3 0 chrX 39924556 39924851 -137049289 - AluSx SINE Alu -16 296 1 958 158 16 32 chrX 39924964 39925023 -137049117 - MER53 DNA DNA -2 187 129 2216 105 28 0 chrX 39925023 39925309 -137048831 - AluSx SINE Alu -18 294 1 958 158 16 32 chrX 39925309 39925439 -137048701 - MER53 DNA DNA -60 129 1 247 284 84 42 chrX 39925518 39925613 -137048527 + L2 LINE L2 3174 3272 0 202 330 0 20 chrX 39925892 39925992 -137048148 + GA-rich Low_complexity Low_complexity 4 101 0 200 224 0 41 chrX 39926496 39926545 -137047595 + MIR SINE MIR 117 163 -99 255 79 0 0 chrX 39928082 39928120 -137046020 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2057 95 0 61 chrX 39928122 39928418 -137045722 - AluSx SINE Alu -23 289 12 1176 85 0 0 chrX 39928419 39928560 -137045580 - AluSq/x SINE Alu -172 141 1 2521 76 0 0 chrX 39928571 39928873 -137045267 - AluSc SINE Alu -7 302 1 956 196 26 10 chrX 39928874 39929068 -137045072 - MIR SINE MIR -64 198 2 1826 182 57 76 chrX 39929210 39929683 -137044457 - MER31B LTR ERV1 -2 464 1 842 132 0 23 chrX 39929695 39929824 -137044316 + FLAM_C SINE Alu 1 126 -17 1875 150 0 20 chrX 39929833 39930127 -137044013 - AluJb SINE Alu -24 288 1 190 250 143 0 chrX 39930148 39930204 -137043936 - MIR SINE MIR -163 99 36 2147 98 0 21 chrX 39930290 39930597 -137043543 - AluSx SINE Alu 0 301 1 312 237 172 32 chrX 39930623 39930716 -137043424 - L2 LINE L2 0 3313 3208 639 136 45 0 chrX 39930739 39930849 -137043291 - MER67B LTR ERV1 -4 657 543 1076 92 42 0 chrX 39930851 39930993 -137043147 - AluSg/x SINE Alu -15 297 150 362 120 0 0 chrX 39930994 39931044 -137043096 - Alu SINE Alu -252 50 1 2132 99 23 7 chrX 39931063 39931365 -137042775 - AluYa5 SINE Alu 0 311 5 836 224 49 32 chrX 39931365 39931611 -137042529 - MER67B LTR ERV1 -407 254 5 261 257 76 76 chrX 39931650 39931821 -137042319 - L2 LINE L2 -272 3041 2871 325 321 9 46 chrX 39931940 39932049 -137042091 + MER91A DNA MER1_type 1 105 -91 2088 142 54 20 chrX 39932164 39932491 -137041649 + MLT1A1 LTR MaLR 1 342 -23 180 0 0 0 chrX 39932491 39932511 -137041629 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2088 142 54 20 chrX 39932511 39932536 -137041604 + MLT1A1 LTR MaLR 342 365 0 2264 116 3 0 chrX 39932564 39932856 -137041284 + AluSx SINE Alu 1 293 -19 2228 107 10 3 chrX 39933248 39933547 -137040593 - AluSx SINE Alu -11 301 1 357 134 0 13 chrX 39933819 39933887 -137040253 + AluSx SINE Alu 1 49 -252 * 362 103 0 0 chrX 39933878 39933934 -137040206 + AluSp/q SINE Alu 158 207 -96 1821 128 0 0 chrX 39933935 39934186 -137039954 + AluSx SINE Alu 42 292 -20 21 57 0 0 chrX 39934187 39934222 -137039918 + AT_rich Low_complexity Low_complexity 1 35 0 2305 110 0 0 chrX 39934316 39934615 -137039525 - AluSq SINE Alu -14 299 1 226 173 291 36 chrX 39935019 39935129 -137039011 - MIR3 SINE MIR -58 150 13 227 250 0 60 chrX 39935187 39935271 -137038869 + GA-rich Low_complexity Low_complexity 5 83 0 753 261 0 33 chrX 39935310 39935494 -137038646 - MER5B DNA MER1_type 0 178 1 238 319 87 51 chrX 39935597 39935735 -137038405 + L3 LINE CR1 947 1089 -488 649 270 75 86 chrX 39935803 39936162 -137037978 - L2 LINE L2 -8 3264 2910 372 275 16 88 chrX 39936285 39936478 -137037662 - L2 LINE L2 -213 3059 2881 2441 45 10 7 chrX 39936513 39936804 -137037336 - AluY SINE Alu -19 292 1 2326 122 0 0 chrX 39936830 39937133 -137037007 - AluSx SINE Alu -9 303 1 896 139 0 15 chrX 39937197 39937334 -137036806 + AluJo SINE Alu 1 135 -177 474 230 0 44 chrX 39937381 39937494 -137036646 - MER5B DNA MER1_type -68 110 3 1803 162 17 7 chrX 39937580 39937870 -137036270 - AluJb SINE Alu -19 293 1 433 229 257 7 chrX 39937870 39938014 -137036126 - MIR SINE MIR -16 246 67 845 135 8 0 chrX 39938163 39938289 -137035851 - AluSg/x SINE Alu -4 306 180 1194 192 156 42 chrX 39938306 39938665 -137035475 - L1MC4a LINE L1 -1888 5920 5521 2444 65 3 0 chrX 39938693 39938985 -137035155 + AluY SINE Alu 2 294 -17 851 157 5 90 chrX 39938986 39939145 -137034995 - L1PA16 LINE L1 -7 6149 6052 2244 119 3 0 chrX 39939145 39939456 -137034684 - AluSx SINE Alu 0 312 1 851 157 5 90 chrX 39939456 39939608 -137034532 - L1PA16 LINE L1 -104 6052 5889 1959 148 24 0 chrX 39939630 39939920 -137034220 + AluJb SINE Alu 1 297 -15 1222 172 5 0 chrX 39939940 39940143 -137033997 - L1PA16 LINE L1 -4 6162 5959 1370 94 0 0 chrX 39940242 39940455 -137033685 + AluSg/x SINE Alu 126 338 0 350 135 0 0 chrX 39940466 39940518 -137033622 + MER66B LTR ERV1 295 346 -140 2281 88 40 0 chrX 39940875 39941171 -137032969 - AluSc SINE Alu -1 308 1 2543 81 3 0 chrX 39941171 39941480 -137032660 - AluSp SINE Alu -3 310 1 1999 118 53 0 chrX 39942476 39942799 -137031341 - L1PA16 LINE L1 -190 5976 5637 2324 92 10 7 chrX 39942894 39943198 -137030942 + AluSx SINE Alu 1 305 -7 1112 155 0 0 chrX 39943951 39944112 -137030028 + FRAM SINE Alu 1 160 -16 590 303 20 47 chrX 39944186 39944549 -137029591 + L1MCa LINE L1 89 325 -5720 2093 114 40 0 chrX 39944558 39944856 -137029284 - AluSx SINE Alu -2 310 1 216 0 0 0 chrX 39944864 39944888 -137029252 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 894 127 0 0 chrX 39944890 39945008 -137029132 - FLAM_C SINE Alu -25 118 1 1790 118 44 34 chrX 39945304 39945348 -137028792 - MER65A LTR ERV1 -1 444 402 2496 80 3 0 chrX 39945348 39945650 -137028490 + AluSg SINE Alu 1 303 -7 1790 118 44 34 chrX 39945650 39945926 -137028214 - MER65A LTR ERV1 -43 402 121 881 176 26 7 chrX 39945940 39946093 -137028047 + FRAM SINE Alu 1 153 -23 241 75 0 113 chrX 39946095 39946148 -137027992 - Alu SINE Alu 0 133 87 1036 217 5 9 chrX 39946150 39946367 -137027773 - AluJo SINE Alu -92 220 5 533 105 59 171 chrX 39946382 39946464 -137027676 - MER65B LTR ERV1 -396 135 45 2320 84 0 3 chrX 39946464 39946777 -137027363 - AluSq SINE Alu 0 312 1 533 105 59 171 chrX 39946777 39946788 -137027352 - MER65B LTR ERV1 -486 45 34 244 0 56 0 chrX 39946788 39946824 -137027316 + (TTG)n Simple_repeat Simple_repeat 2 39 0 533 105 59 171 chrX 39946824 39946880 -137027260 - MER65B LTR ERV1 -497 34 1 1694 76 80 80 chrX 39947203 39947517 -137026623 + LTR61 LTR ERV1 1 314 -281 707 93 37 0 chrX 39947646 39947753 -137026387 - LTR61 LTR ERV1 0 595 485 449 136 49 0 chrX 39947746 39947827 -137026313 + LTR61 LTR ERV1 511 595 0 * 798 92 15 8 chrX 39948068 39948199 -137025941 + (TTCC)n Simple_repeat Simple_repeat 2 133 0 2412 99 0 0 chrX 39948199 39948511 -137025629 - AluSx SINE Alu 0 312 1 1151 102 6 0 chrX 39948866 39949043 -137025097 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 236 170 19 0 chrX 39949050 39949103 -137025037 + CT-rich Low_complexity Low_complexity 1 54 0 2116 143 0 10 chrX 39949103 39949417 -137024723 - AluJb SINE Alu -1 311 1 2324 103 6 16 chrX 39949645 39949957 -137024183 - AluSx SINE Alu -3 309 1 1787 156 46 3 chrX 39949959 39950242 -137023898 - AluSx SINE Alu -17 295 1 980 180 0 50 chrX 39950247 39950447 -137023693 - AluJo SINE Alu -5 307 118 478 275 0 28 chrX 39950450 39950592 -137023548 + L2 LINE L2 3176 3313 0 1041 172 0 0 chrX 39950667 39950824 -137023316 + FRAM SINE Alu 1 153 -23 966 126 61 3 chrX 39950829 39951059 -137023081 + AluJb SINE Alu 2 302 -10 2449 93 0 0 chrX 39951272 39951584 -137022556 - AluSx SINE Alu 0 312 1 441 88 0 29 chrX 39951782 39951850 -137022290 - MER3 DNA MER1_type 0 209 144 1757 152 48 0 chrX 39951851 39952120 -137022020 + AluJo SINE Alu 1 282 -30 1374 143 86 9 chrX 39952126 39952405 -137021735 + L1MB3 LINE L1 5813 6100 -83 2289 110 0 7 chrX 39952407 39952716 -137021424 + AluSc SINE Alu 1 307 -2 1204 138 0 11 chrX 39952718 39952899 -137021241 - AluSg/x SINE Alu -14 298 120 2306 100 0 10 chrX 39952900 39953209 -137020931 - AluSq SINE Alu -7 306 1 664 177 0 0 chrX 39953209 39953322 -137020818 - MER3 DNA MER1_type -96 113 1 1159 192 99 71 chrX 39953569 39953838 -137020302 - L1MB5 LINE L1 -6 6168 5885 2179 132 0 3 chrX 39953838 39954134 -137020006 - AluSx SINE Alu -17 295 1 1159 192 99 71 chrX 39954134 39954228 -137019912 - L1MB5 LINE L1 -289 5885 5795 260 158 35 18 chrX 39954228 39954241 -137019899 - MER46A DNA MER2_type -78 158 145 554 146 285 0 chrX 39954241 39954385 -137019755 + MER46B DNA MER2_type 1 60 -176 2228 106 27 0 chrX 39954425 39954717 -137019423 - AluSx SINE Alu -12 300 1 1813 152 0 0 chrX 39954717 39954978 -137019162 + AluJb SINE Alu 30 292 -20 1309 89 5 0 chrX 39955007 39955197 -137018943 + MER46B DNA MER2_type 46 236 0 914 141 31 0 chrX 39955197 39955360 -137018780 - L1MB5 LINE L1 -391 5783 5616 1724 205 39 39 chrX 39955447 39955856 -137018284 + LTR2 LTR ERV1 41 449 0 2506 73 0 0 chrX 39955865 39956167 -137017973 - AluY SINE Alu -9 302 1 2106 160 7 10 chrX 39956167 39956726 -137017414 - L1MB5 LINE L1 -563 5611 5055 2000 89 0 4 chrX 39957154 39957411 -137016729 + AluSg SINE Alu 54 309 -1 1781 146 7 14 chrX 39957463 39957744 -137016396 + AluJo SINE Alu 1 279 -33 594 0 0 0 chrX 39957746 39957812 -137016328 + (GAGAA)n Simple_repeat Simple_repeat 4 69 0 478 139 10 40 chrX 39957832 39957933 -137016207 + L1MC4a LINE L1 5938 6035 -1773 779 264 171 26 chrX 39958357 39958709 -137015431 - L2 LINE L2 -1 3312 2910 212 122 24 0 chrX 39959061 39959102 -137015038 + CT-rich Low_complexity Low_complexity 4 45 0 180 0 0 0 chrX 39959263 39959283 -137014857 + (TC)n Simple_repeat Simple_repeat 2 21 0 330 26 0 0 chrX 39959374 39959413 -137014727 + (TC)n Simple_repeat Simple_repeat 1 39 0 275 119 0 17 chrX 39959413 39959472 -137014668 + (CA)n Simple_repeat Simple_repeat 2 59 0 1499 171 12 4 chrX 39959908 39960026 -137014114 + AluJo SINE Alu 1 117 -195 191 35 0 35 chrX 39960026 39960055 -137014085 + (TA)n Simple_repeat Simple_repeat 2 29 0 1499 171 12 4 chrX 39960055 39960188 -137013952 + AluJo SINE Alu 117 254 -58 669 253 109 0 chrX 39960201 39960375 -137013765 - L2 LINE L2 -2195 1119 927 245 174 0 0 chrX 39960377 39960423 -137013717 + MLT2B2 LTR ERVL 1 46 -469 4140 108 95 123 chrX 39960423 39960590 -137013550 + ERVL-B1 LTR ERVL 4858 5028 -736 2359 119 0 0 chrX 39960590 39960902 -137013238 - AluSx SINE Alu 0 312 1 4140 108 95 123 chrX 39960902 39961328 -137012812 + ERVL-B1 LTR ERVL 5028 5464 -300 1671 83 13 40 chrX 39961328 39961556 -137012584 + AluSq SINE Alu 1 222 -91 504 143 0 0 chrX 39961556 39961626 -137012514 - AluS SINE Alu -241 71 2 4140 108 95 123 chrX 39961626 39961887 -137012253 + ERVL-B1 LTR ERVL 5462 5757 -7 2165 182 12 103 chrX 39961887 39962459 -137011681 + MLT2B1 LTR ERVL 1 520 0 1208 209 54 179 chrX 39962461 39962655 -137011485 - L2 LINE L2 -2410 904 687 2039 145 0 0 chrX 39962655 39962944 -137011196 - AluSx SINE Alu -20 292 4 1208 209 54 179 chrX 39962944 39962990 -137011150 - L2 LINE L2 -2627 687 637 366 98 0 0 chrX 39962990 39963041 -137011099 - MER66B LTR ERV1 -141 345 295 909 130 0 36 chrX 39963046 39963184 -137010956 - FLAM_C SINE Alu 0 133 1 1208 209 54 179 chrX 39963184 39963645 -137010495 - L2 LINE L2 -2681 633 241 1334 228 40 68 chrX 39963662 39964106 -137010034 + L1MEc LINE L1 34 465 -5931 239 89 200 0 chrX 39964112 39964157 -137009983 - MER51A LTR ERV1 0 634 581 4024 95 14 35 chrX 39964168 39964259 -137009881 - MER51A LTR ERV1 -17 640 549 2406 107 0 0 chrX 39964259 39964567 -137009573 + AluSg SINE Alu 1 308 -2 4024 95 14 35 chrX 39964567 39965113 -137009027 - MER51A LTR ERV1 -108 549 2 670 211 84 84 chrX 39965114 39965315 -137008825 + L1MEc LINE L1 467 670 -5726 2137 136 3 22 chrX 39965315 39965632 -137008508 + AluJb SINE Alu 1 311 -1 670 211 84 84 chrX 39965632 39965667 -137008473 + L1MEc LINE L1 669 703 -5693 982 125 30 71 chrX 39965691 39965859 -137008281 - AluSg/x SINE Alu -18 294 134 842 186 41 29 chrX 39965860 39965915 -137008225 + L1MEc LINE L1 728 781 -5615 4701 137 28 27 chrX 39965915 39966699 -137007441 + LTR1 LTR ERV1 1 785 0 842 186 41 29 chrX 39966699 39966885 -137007255 + L1MEc LINE L1 781 972 -5424 986 112 0 65 chrX 39966886 39967056 -137007084 + FRAM SINE Alu 1 158 -18 1491 196 25 148 chrX 39967187 39967747 -137006393 - LTR41 LTR ERVL -282 491 1 707 179 0 0 chrX 39967817 39967929 -137006211 + FRAM SINE Alu 48 159 -17 831 253 86 27 chrX 39968116 39968417 -137005723 - ERVL LTR ERVL -268 5496 5178 2045 111 31 0 chrX 39968457 39968771 -137005369 + AluSx SINE Alu 1 323 0 5891 268 43 20 chrX 39968784 39970795 -137003345 - ERVL LTR ERVL -607 5157 3194 2253 92 3 0 chrX 39970795 39971090 -137003050 + AluSx SINE Alu 1 296 -16 5891 268 43 20 chrX 39971090 39971120 -137003020 - ERVL LTR ERVL -2570 3194 3166 1818 151 0 23 chrX 39971120 39971425 -137002715 + AluJb SINE Alu 1 298 -14 5891 268 43 20 chrX 39971425 39971601 -137002539 - ERVL LTR ERVL -2598 3166 2820 1768 158 0 48 chrX 39971608 39971924 -137002216 - MLT2D LTR ERVL 0 414 114 996 9 0 0 chrX 39971924 39972037 -137002103 + (TA)n Simple_repeat Simple_repeat 2 114 0 1730 157 11 14 chrX 39972037 39972188 -137001952 - AluJb SINE Alu -27 285 134 2312 69 0 7 chrX 39972188 39972499 -137001641 - AluY SINE Alu 0 311 1 1730 157 11 14 chrX 39972499 39972633 -137001507 - AluJb SINE Alu -178 134 1 2031 131 13 0 chrX 39972643 39972948 -137001192 - AluSx SINE Alu 0 312 4 4799 287 54 47 chrX 39972960 39973615 -137000525 - ERVL LTR ERVL -2930 2834 2185 1777 140 0 11 chrX 39973615 39973894 -137000246 - AluJo SINE Alu -32 280 5 4799 287 54 47 chrX 39973894 39974282 -136999858 - ERVL LTR ERVL -3579 2185 1801 800 141 0 63 chrX 39974282 39974424 -136999716 + FLAM_C SINE Alu 1 133 0 4799 287 54 47 chrX 39974424 39974449 -136999691 - ERVL LTR ERVL -3963 1801 1778 2389 61 0 0 chrX 39974449 39974745 -136999395 + AluY SINE Alu 2 297 -14 4799 287 54 47 chrX 39974745 39975720 -136998420 - ERVL LTR ERVL -3986 1778 775 1932 119 7 0 chrX 39976012 39976327 -136997813 - AluSg1 SINE Alu 0 317 1 2432 71 0 0 chrX 39976331 39976639 -136997501 - AluY SINE Alu -3 308 1 329 195 13 26 chrX 39976957 39977034 -136997106 - LTR41 LTR ERVL 0 773 698 1956 144 3 6 chrX 39977039 39977352 -136996788 + AluJb SINE Alu 1 312 0 2185 201 96 41 chrX 39977411 39978071 -136996069 - LTR41 LTR ERVL -77 696 1 738 189 57 94 chrX 39978073 39978210 -136995930 + L1M4 LINE L1 2889 3013 -3133 1909 142 0 3 chrX 39978210 39978499 -136995641 - AluJo SINE Alu -24 288 1 738 189 57 94 chrX 39978499 39978626 -136995514 + L1M4 LINE L1 3013 3143 -3003 1474 97 0 0 chrX 39978627 39978823 -136995317 + AluSq SINE Alu 2 197 -116 1908 203 30 136 chrX 39978838 39978998 -136995142 + L1M4 LINE L1 3364 3539 -2607 1640 121 3 140 chrX 39978998 39979140 -136995000 + AluJo SINE Alu 1 66 -246 2120 101 0 29 chrX 39979140 39979448 -136994692 + AluSg SINE Alu 1 299 -11 1640 121 3 140 chrX 39979448 39979661 -136994479 + AluJo SINE Alu 66 307 -5 1908 203 30 136 chrX 39979661 39979754 -136994386 + L1M4 LINE L1 3539 3640 -2506 2250 192 119 23 chrX 39979754 39980323 -136993817 - MLT1E3 LTR MaLR 0 624 1 1908 203 30 136 chrX 39980323 39980506 -136993634 + L1M4 LINE L1 3640 3841 -2305 2256 93 0 3 chrX 39980506 39980806 -136993334 + AluSq SINE Alu 1 299 -14 1908 203 30 136 chrX 39980806 39980880 -136993260 + L1M4 LINE L1 3841 3921 -2225 1783 155 0 3 chrX 39980880 39981170 -136992970 + AluJb SINE Alu 2 290 -22 1908 203 30 136 chrX 39981170 39981465 -136992675 + L1M4 LINE L1 3921 4086 -2060 412 125 0 0 chrX 39981533 39981597 -136992543 + LTR49-int LTR ERV1 3921 3984 -4136 * 1218 173 31 35 chrX 39981582 39981808 -136992332 + LTR49-int LTR ERV1 5939 6163 -595 1881 125 7 23 chrX 39981905 39982208 -136991932 - AluJb SINE Alu -14 298 1 1572 182 7 15 chrX 39982208 39982477 -136991663 + LTR49-int LTR ERV1 6831 7097 -1023 1166 164 18 49 chrX 39982480 39982705 -136991435 + MER49 LTR ERV1 1 218 -705 1867 115 7 0 chrX 39982779 39983058 -136991082 + AluSx SINE Alu 9 289 -23 2300 103 0 0 chrX 39983058 39983369 -136990771 + AluSq SINE Alu 1 311 -2 1804 146 56 12 chrX 39983664 39983985 -136990155 + LTR26 LTR ERV1 1 335 -268 2012 126 0 0 chrX 39983986 39984279 -136989861 + AluJb SINE Alu 1 293 -19 731 99 59 0 chrX 39984285 39984386 -136989754 - AluSg/x SINE Alu -53 257 151 1795 179 0 10 chrX 39984406 39984713 -136989427 - MER90 LTR ERV1 0 575 272 306 246 0 0 chrX 39984713 39984774 -136989366 - Tigger5 DNA MER2_type 0 2323 2263 1945 94 40 4 chrX 39984852 39985129 -136989011 - AluSc SINE Alu -22 287 1 1632 125 68 32 chrX 39985138 39985418 -136988722 - AluJo SINE Alu -22 290 1 234 260 14 0 chrX 39985419 39985492 -136988648 - MER94 DNA DNA -56 78 5 738 82 0 0 chrX 39985721 39985818 -136988322 + AluSg/x SINE Alu 205 301 -8 1669 139 31 54 chrX 39985818 39985968 -136988172 + AluJb SINE Alu 1 153 -159 2171 102 3 0 chrX 39985968 39986261 -136987879 + AluSx SINE Alu 1 294 -18 1669 139 31 54 chrX 39986261 39986427 -136987713 + AluJb SINE Alu 153 310 -2 510 168 105 63 chrX 39986427 39986570 -136987570 + LTR49-int LTR ERV1 3828 3976 -2355 * 2742 171 31 53 chrX 39986559 39987046 -136987094 + LTR49-int LTR ERV1 4294 4790 -1541 1785 62 9 0 chrX 39987046 39987272 -136986868 - AluY SINE Alu -18 293 66 2196 100 0 3 chrX 39987273 39987572 -136986568 - AluSq SINE Alu -15 298 1 2742 171 31 53 chrX 39987572 39987794 -136986346 + LTR49-int LTR ERV1 4789 4989 -1342 539 152 0 33 chrX 39987794 39987873 -136986267 - MER41A LTR ERV1 0 554 477 1597 71 0 0 chrX 39987873 39988071 -136986069 + AluY SINE Alu 1 198 -113 539 152 0 33 chrX 39988071 39988083 -136986057 - MER41A LTR ERV1 -77 477 466 237 75 0 0 chrX 39988074 39988114 -136986026 + AluY SINE Alu 269 308 0 * 3536 125 15 32 chrX 39988105 39988691 -136985449 - MER41B LTR ERV1 -57 578 3 3163 111 20 126 chrX 39988692 39988737 -136985403 + LTR49-int LTR ERV1 4985 5033 -913 6608 61 6 38 chrX 39988737 39990445 -136983695 + SVA Other Other 5 1383 -3 3163 111 20 126 chrX 39990445 39990559 -136983581 + LTR49-int LTR ERV1 5033 5157 -789 2176 85 24 3 chrX 39990559 39990852 -136983288 - AluSq SINE Alu -14 299 1 2187 89 20 7 chrX 39990854 39991158 -136982982 - AluY SINE Alu -3 308 1 216 0 0 0 chrX 39991158 39991182 -136982958 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3163 111 20 126 chrX 39991182 39991515 -136982625 + LTR49-int LTR ERV1 5157 5524 -422 2137 117 0 16 chrX 39991515 39991831 -136982309 + AluSx SINE Alu 2 312 0 3163 111 20 126 chrX 39991831 39991907 -136982233 + LTR49-int LTR ERV1 5524 5606 -340 2028 132 0 0 chrX 39991907 39992210 -136981930 + AluSx SINE Alu 5 307 -5 1939 156 0 0 chrX 39992212 39992519 -136981621 + AluSx SINE Alu 1 307 -5 3163 111 20 126 chrX 39992519 39992696 -136981444 + LTR49-int LTR ERV1 5234 5428 -518 541 225 13 40 chrX 39992676 39992827 -136981313 + LTR49-int LTR ERV1 4307 4453 -483 * 2492 106 11 17 chrX 39992827 39993185 -136980955 - LTR29 LTR ERV1 0 622 267 470 17 17 0 chrX 39993192 39993251 -136980889 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 1600 158 13 48 chrX 39993287 39993541 -136980599 - AluJb SINE Alu -6 306 63 2517 47 0 0 chrX 39993541 39993842 -136980298 + AluY SINE Alu 2 302 -9 1600 158 13 48 chrX 39993842 39993898 -136980242 - AluJb SINE Alu -249 63 7 1814 92 69 0 chrX 39993904 39994165 -136979975 - LTR29 LTR ERV1 -342 280 2 1449 111 7 98 chrX 39994281 39994416 -136979724 + LTR49-int LTR ERV1 5907 6053 -278 2246 92 0 7 chrX 39994416 39994722 -136979418 + AluSq SINE Alu 1 304 -9 1449 111 7 98 chrX 39994722 39994826 -136979314 + LTR49-int LTR ERV1 6053 6165 -166 1874 138 0 11 chrX 39994826 39995109 -136979031 + AluJo SINE Alu 1 280 -32 225 0 0 0 chrX 39995116 39995141 -136978999 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 1449 111 7 98 chrX 39995141 39995189 -136978951 + LTR49-int LTR ERV1 6125 6176 -155 825 127 0 8 chrX 39995190 39995316 -136978824 + FLAM_C SINE Alu 1 125 -18 23 33 0 0 chrX 39995316 39995346 -136978794 + AT_rich Low_complexity Low_complexity 1 30 0 642 218 18 41 chrX 39995346 39995516 -136978624 + LTR49-int LTR ERV1 6166 6331 0 2377 117 109 112 chrX 39995516 39995812 -136978328 + LTR49 LTR ERV1 1 296 -299 2183 121 0 6 chrX 39995812 39996127 -136978013 - AluSq SINE Alu 0 313 1 2377 117 109 112 chrX 39996127 39996302 -136977838 + LTR49 LTR ERV1 296 472 -123 1672 140 82 55 chrX 39996302 39996373 -136977767 - THE1C LTR MaLR 0 375 307 2060 129 6 0 chrX 39996373 39996684 -136977456 - AluSq SINE Alu 0 313 1 1672 140 82 55 chrX 39996684 39996977 -136977163 - THE1C LTR MaLR -68 307 1 2377 117 109 112 chrX 39996977 39997101 -136977039 + LTR49 LTR ERV1 472 595 0 1209 179 53 8 chrX 39997185 39997431 -136976709 - LTR54 LTR ERV1 0 510 254 567 207 0 0 chrX 39997433 39997544 -136976596 + Tigger2 DNA MER2_type 2 112 -2606 1755 130 36 18 chrX 39997549 39997847 -136976293 + AluSx SINE Alu 1 303 0 764 140 15 37 chrX 39997849 39997985 -136976155 + AluJo/FLAM SINE Alu 1 133 -169 259 119 0 4 chrX 39997985 39998021 -136976119 + AluY SINE Alu 133 161 -140 2056 190 84 26 chrX 39998021 39998484 -136975656 + LTR2B LTR ERV1 1 490 0 54963 49 17 14 chrX 39998492 40004829 -136969311 + Harlequin LTR ERV1 9 6372 -524 2458 62 7 0 chrX 40004829 40005134 -136969006 + AluY SINE Alu 1 307 -4 54963 49 17 14 chrX 40005134 40005661 -136968479 + Harlequin LTR ERV1 6372 6896 0 1929 176 79 41 chrX 40005680 40006122 -136968018 + LTR2B LTR ERV1 32 490 0 961 108 0 0 chrX 40006122 40006261 -136967879 + AluY SINE Alu 165 303 -8 1875 169 109 45 chrX 40006298 40006778 -136967362 + LTR10A LTR ERV1 1 548 0 * 4070 120 57 15 chrX 40006778 40007428 -136966712 - MER50 LTR ERV1 -54 680 4 5093 111 56 89 chrX 40007437 40007587 -136966553 + Tigger2 DNA MER2_type 123 276 -2442 1958 140 7 10 chrX 40007587 40007895 -136966245 + AluJo SINE Alu 1 307 -5 5093 111 56 89 chrX 40007895 40008712 -136965428 + Tigger2 DNA MER2_type 276 1058 -1660 648 144 0 10 chrX 40008712 40008967 -136965173 + AluJ SINE Alu 1 312 0 637 178 0 59 chrX 40009006 40009141 -136964999 + FLAM_A SINE Alu 14 140 -2 9835 109 40 13 chrX 40009157 40009238 -136964902 + Tigger2 DNA MER2_type 1060 1137 -1581 1878 147 10 3 chrX 40009238 40009545 -136964595 + AluJo SINE Alu 1 309 -3 9835 109 40 13 chrX 40009545 40010945 -136963195 + Tigger2 DNA MER2_type 1137 2581 -137 1706 123 35 60 chrX 40010944 40011260 -136962880 + THE1C LTR MaLR 66 373 -2 * 10224 113 9 54 chrX 40011264 40012178 -136961962 + THE1C-int LTR MaLR 3 812 -768 2059 137 0 3 chrX 40012178 40012478 -136961662 + AluSx SINE Alu 1 299 -13 10224 113 9 54 chrX 40012478 40013215 -136960925 + THE1C-int LTR MaLR 812 1580 0 1812 119 86 47 chrX 40013215 40013576 -136960564 + THE1C LTR MaLR 1 375 0 370 88 0 18 chrX 40013576 40013633 -136960507 + Tigger2 DNA MER2_type 2576 2631 -87 1881 142 3 7 chrX 40013635 40013931 -136960209 - AluJb SINE Alu -17 295 1 869 141 0 7 chrX 40013943 40014078 -136960062 - AluJo SINE Alu -178 134 1 472 202 32 0 chrX 40014078 40014172 -136959968 + Tigger2 DNA MER2_type 2612 2708 -10 1361 147 34 29 chrX 40014172 40014447 -136959693 - LTR54 LTR ERV1 -197 301 1 22 0 0 0 chrX 40014485 40014507 -136959633 + AT_rich Low_complexity Low_complexity 1 22 0 1883 138 0 25 chrX 40014630 40014948 -136959192 + AluJb SINE Alu 3 312 0 1920 148 7 10 chrX 40014948 40015252 -136958888 + AluSx SINE Alu 1 303 -9 1002 154 6 25 chrX 40015451 40015613 -136958527 - AluJb SINE Alu -17 295 137 283 191 19 19 chrX 40015624 40015712 -136958428 - L1ME LINE L1 -316 5854 5767 1662 153 42 21 chrX 40015788 40016075 -136958065 - AluJo SINE Alu -19 293 1 247 313 30 0 chrX 40016357 40016456 -136957684 - L1 LINE L1 -2328 3818 3717 1610 89 0 193 chrX 40016592 40016950 -136957190 - AluSc SINE Alu -8 291 3 251 306 63 9 chrX 40017020 40017131 -136957009 + L2 LINE L2 2971 3087 -185 24 0 0 0 chrX 40017457 40017481 -136956659 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chrX 40018256 40018284 -136955856 + AT_rich Low_complexity Low_complexity 1 28 0 185 253 147 41 chrX 40018941 40019111 -136955029 + L2 LINE L2 2702 2889 -425 291 146 0 0 chrX 40020129 40020170 -136953970 - AluSp SINE Alu -131 172 132 623 160 0 0 chrX 40020171 40020265 -136953875 - AluJ/FLAM SINE Alu -216 96 3 2201 107 7 0 chrX 40020280 40020571 -136953569 - AluSx SINE Alu -15 297 5 189 0 0 0 chrX 40021263 40021284 -136952856 + (T)n Simple_repeat Simple_repeat 1 21 0 234 0 0 0 chrX 40024038 40024064 -136950076 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 315 0 0 0 chrX 40024063 40024098 -136950042 + (TC)n Simple_repeat Simple_repeat 1 35 0 1995 154 0 7 chrX 40024976 40025274 -136948866 - AluJb SINE Alu -16 296 1 2444 73 3 3 chrX 40025456 40025759 -136948381 - AluSp SINE Alu -10 303 1 412 114 29 0 chrX 40025812 40025882 -136948258 - Charlie5 DNA MER1_type 0 2624 2553 2227 107 3 7 chrX 40026632 40026941 -136947199 - AluSg SINE Alu -2 308 1 2163 175 86 28 chrX 40029396 40030647 -136943493 + L1MB2 LINE L1 4577 6036 -135 255 192 39 0 chrX 40031214 40031266 -136942874 + LTR43-int LTR ERV1 1169 1222 -3576 26 0 0 0 chrX 40031718 40031744 -136942396 + AT_rich Low_complexity Low_complexity 1 26 0 5918 60 21 81 chrX 40031757 40033067 -136941073 + SVA Other Other 1 868 -520 6602 67 16 37 chrX 40033086 40034235 -136939905 + SVA Other Other 433 1386 0 244 265 44 0 chrX 40034261 40034329 -136939811 - L1MC4 LINE L1 -20 8022 7952 693 212 77 35 chrX 40034432 40034747 -136939393 - L1MC4 LINE L1 -98 7710 7373 641 308 93 9 chrX 40036047 40036368 -136937772 - L1ME LINE L1 -317 5804 5457 760 152 214 0 chrX 40037023 40037168 -136936972 - AluSg/x SINE Alu -6 303 128 422 165 76 25 chrX 40037161 40037240 -136936900 - AluY SINE Alu -233 85 3 * 252 86 0 0 chrX 40037574 40037609 -136936531 + (A)n Simple_repeat Simple_repeat 1 35 0 184 356 39 10 chrX 40038695 40038799 -136935341 - MIR3 SINE MIR -14 194 88 1073 133 174 0 chrX 40039069 40039264 -136934876 + MER30 DNA MER1_type 2 230 0 1651 158 106 62 chrX 40039652 40039959 -136934181 + MSTD LTR MaLR 13 340 -56 1905 147 0 27 chrX 40039959 40040258 -136933882 - AluJb SINE Alu -21 291 1 1651 158 106 62 chrX 40040258 40040318 -136933822 + MSTD LTR MaLR 340 396 0 291 290 109 52 chrX 40041150 40041343 -136932797 + MIR SINE MIR 43 246 -16 335 291 63 16 chrX 40042865 40042992 -136931148 - L1ME LINE L1 -458 5663 5531 228 238 32 0 chrX 40045563 40045626 -136928514 + L1ME LINE L1 5541 5605 -516 1543 153 219 3 chrX 40046940 40047292 -136926848 + MSTA LTR MaLR 1 428 0 2415 62 3 0 chrX 40047950 40048238 -136925902 + AluY SINE Alu 1 289 -22 200 59 29 0 chrX 40048241 40048275 -136925865 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1089 148 124 5 chrX 40048883 40049093 -136925047 + MER46A DNA MER2_type 1 235 -1 15123 134 60 13 chrX 40050327 40052920 -136921220 + Tigger2 DNA MER2_type 1 2715 -3 271 208 139 0 chrX 40054050 40054122 -136920018 + L2 LINE L2 3171 3252 -20 437 185 22 0 chrX 40055286 40055378 -136918762 - Charlie5 DNA MER1_type -2496 116 23 2311 88 7 0 chrX 40055632 40055927 -136918213 - AluSg SINE Alu -13 297 1 242 276 0 17 chrX 40056270 40056328 -136917812 + MIR SINE MIR 42 98 -164 346 209 264 0 chrX 40056513 40056642 -136917498 - MIR SINE MIR -47 215 53 2240 105 0 22 chrX 40056656 40056969 -136917171 + AluSx SINE Alu 1 306 -6 1357 224 0 4 chrX 40056973 40057232 -136916908 + AluJo SINE Alu 40 297 -15 2086 101 14 11 chrX 40057250 40057536 -136916604 + AluSx SINE Alu 1 287 -25 441 0 0 0 chrX 40058197 40058246 -136915894 + (TG)n Simple_repeat Simple_repeat 2 50 0 459 219 43 82 chrX 40060524 40060757 -136913383 + MIR SINE MIR 31 254 -8 209 338 14 0 chrX 40060987 40061058 -136913082 + MIR SINE MIR 78 149 -59 195 271 192 87 chrX 40061286 40061515 -136912625 - L2 LINE L2 -20 3252 3000 448 212 0 0 chrX 40062099 40062184 -136911956 - AluJ/FRAM SINE Alu -14 298 214 213 210 0 0 chrX 40062557 40062619 -136911521 + GA-rich Low_complexity Low_complexity 1 62 0 231 190 0 0 chrX 40062910 40062968 -136911172 + (TGG)n Simple_repeat Simple_repeat 3 60 0 308 277 123 8 chrX 40063586 40063716 -136910424 + MIR SINE MIR 106 250 -12 216 329 136 0 chrX 40063743 40063883 -136910257 + MIR SINE MIR 48 206 -56 182 185 0 0 chrX 40064763 40064790 -136909350 - L2 LINE L2 -24 3289 3263 1881 148 3 3 chrX 40064863 40065153 -136908987 - AluSx SINE Alu -22 290 1 351 263 10 0 chrX 40065161 40065260 -136908880 - MIR SINE MIR -118 144 45 214 370 58 45 chrX 40065567 40065721 -136908419 + MIR3 SINE MIR 2 157 -51 1560 183 11 14 chrX 40066629 40066914 -136907226 - AluJo SINE Alu -28 284 1 270 231 51 77 chrX 40067154 40067271 -136906869 - MIR SINE MIR -145 117 4 1821 128 0 0 chrX 40067764 40068051 -136906089 + AluSx SINE Alu 34 320 0 236 337 23 0 chrX 40068165 40068251 -136905889 + MER117 DNA MER1_type 71 158 -39 357 259 89 9 chrX 40068297 40068409 -136905731 + MIR SINE MIR 20 140 -68 759 113 81 65 chrX 40068431 40068555 -136905585 - FLAM_C SINE Alu -6 127 2 1991 143 7 3 chrX 40069536 40069830 -136904310 - AluJb SINE Alu -17 295 1 2273 108 0 3 chrX 40069840 40070146 -136903994 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 40070933 40070954 -136903186 + AT_rich Low_complexity Low_complexity 1 21 0 248 271 243 0 chrX 40074068 40074175 -136899965 + L2 LINE L2 3178 3310 -3 327 263 160 13 chrX 40074750 40074906 -136899234 + L2 LINE L2 2550 2728 -586 * 453 284 189 37 chrX 40074875 40075171 -136898969 + L2 LINE L2 2924 3264 -8 228 231 46 146 chrX 40075214 40075344 -136898796 - MIR3 SINE MIR -1 207 91 204 135 0 0 chrX 40076321 40076358 -136897782 + (TCC)n Simple_repeat Simple_repeat 3 39 0 431 201 106 0 chrX 40077244 40077357 -136896783 + MIR SINE MIR 37 163 -67 1585 167 0 0 chrX 40079833 40080090 -136894050 - AluJb SINE Alu -11 301 45 330 123 0 0 chrX 40080270 40080327 -136893813 + (TATG)n Simple_repeat Simple_repeat 4 60 0 235 188 0 0 chrX 40080328 40080376 -136893764 - LTR66 LTR ERVL -172 438 391 452 297 81 0 chrX 40080376 40080524 -136893616 + L1MC4 LINE L1 6767 6926 -1116 760 171 108 0 chrX 40080526 40080655 -136893485 + FLAM_C SINE Alu 1 143 0 883 159 40 7 chrX 40080758 40080909 -136893231 - AluJo SINE Alu -111 201 46 1032 285 109 25 chrX 40080910 40081397 -136892743 + L1MC4 LINE L1 7366 7893 -149 268 264 11 11 chrX 40081508 40081599 -136892541 + L1MC4 LINE L1 6912 7002 -1040 316 267 48 36 chrX 40081810 40081975 -136892165 + L1MC4 LINE L1 7115 7281 -761 286 233 90 109 chrX 40082116 40082382 -136891758 + L1MC5 LINE L1 7326 7586 -375 1673 133 53 21 chrX 40083241 40083526 -136890614 - AluJo SINE Alu -18 294 1 23 0 0 0 chrX 40083531 40083554 -136890586 + AT_rich Low_complexity Low_complexity 1 23 0 210 250 0 0 chrX 40084141 40084185 -136889955 - MIR SINE MIR -109 153 110 29 47 0 0 chrX 40084281 40084324 -136889816 + AT_rich Low_complexity Low_complexity 1 43 0 954 190 25 13 chrX 40084325 40084483 -136889657 - FAM SINE Alu -11 164 5 185 125 75 113 chrX 40084692 40084772 -136889368 - L2 LINE L2 -19 3253 3177 620 153 72 0 chrX 40084955 40085066 -136889074 + L1MB5 LINE L1 6048 6166 -8 454 311 92 5 chrX 40085203 40085424 -136888716 + MIR SINE MIR 17 254 -8 1762 153 55 4 chrX 40085531 40085806 -136888334 + AluJo SINE Alu 1 289 -23 1637 225 165 51 chrX 40085828 40086635 -136887505 + L1ME3 LINE L1 5250 6159 -3 265 324 173 15 chrX 40087020 40087356 -136886784 + L2 LINE L2 2281 2669 -645 705 198 0 8 chrX 40087448 40087569 -136886571 - AluSp/q SINE Alu -22 291 172 1762 88 0 18 chrX 40087582 40087809 -136886331 - AluSq SINE Alu -90 223 1 194 319 131 77 chrX 40088464 40088724 -136885416 + L2 LINE L2 2968 3241 -31 259 255 0 0 chrX 40091530 40091584 -136882556 - MIR SINE MIR -92 116 63 758 150 231 12 chrX 40091977 40092150 -136881990 - MER46A DNA MER2_type 0 236 26 584 126 23 23 chrX 40092592 40092707 -136881433 - AluJb SINE Alu 0 312 201 204 40 0 0 chrX 40094927 40094952 -136879188 + (A)n Simple_repeat Simple_repeat 1 25 0 630 189 63 119 chrX 40094972 40095274 -136878866 + L1ME2 LINE L1 5725 6009 -155 1806 147 33 0 chrX 40095323 40095638 -136878502 + AluSx SINE Alu 1 324 0 340 288 144 25 chrX 40096242 40096360 -136877780 - L2 LINE L2 -1 3271 3140 219 36 0 0 chrX 40096433 40096461 -136877679 + (CCAA)n Simple_repeat Simple_repeat 2 29 0 2146 140 0 7 chrX 40097721 40098028 -136876112 + AluSq SINE Alu 1 305 -8 320 301 26 53 chrX 40098135 40098248 -136875892 - MIR3 SINE MIR -21 187 78 305 354 96 11 chrX 40098541 40098719 -136875421 - MIR SINE MIR -4 258 66 1805 122 0 0 chrX 40099018 40099264 -136874876 - AluSx SINE Alu -64 248 3 1177 167 142 4 chrX 40099708 40099941 -136874199 - AluJo SINE Alu -47 265 1 254 225 14 14 chrX 40101493 40101564 -136872576 - L1ME LINE L1 -299 5822 5752 252 241 98 45 chrX 40101626 40101738 -136872402 - L1ME LINE L1 -483 5638 5521 316 286 132 30 chrX 40101870 40102136 -136872004 + L1M4 LINE L1 3106 3398 -2748 2262 100 10 3 chrX 40102300 40102599 -136871541 - AluSx SINE Alu -8 304 4 186 43 0 0 chrX 40103327 40103350 -136870790 + (A)n Simple_repeat Simple_repeat 1 23 0 1682 157 58 24 chrX 40103990 40104283 -136869857 - AluJb SINE Alu -9 303 1 908 223 89 34 chrX 40107205 40107532 -136866608 + L1M4 LINE L1 3978 4322 -1824 885 117 0 0 chrX 40107902 40108022 -136866118 - AluSq/x SINE Alu -193 120 1 1365 107 0 0 chrX 40108066 40108243 -136865897 + AluSg/x SINE Alu 115 291 -21 192 77 0 0 chrX 40108243 40108269 -136865871 + (TAAG)n Simple_repeat Simple_repeat 1 26 0 504 232 0 0 chrX 40109530 40109655 -136864485 + (CTGGGG)n Simple_repeat Simple_repeat 6 130 0 324 0 0 0 chrX 40109948 40109984 -136864156 + (TG)n Simple_repeat Simple_repeat 2 37 0 1053 178 0 6 chrX 40110466 40110646 -136863494 - AluJb SINE Alu -84 228 50 248 228 130 22 chrX 40110778 40110870 -136863270 - L2 LINE L2 -56 3257 3156 24 0 0 0 chrX 40111277 40111301 -136862839 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 40112189 40112211 -136861929 + AT_rich Low_complexity Low_complexity 1 22 0 1801 135 104 18 chrX 40112905 40113231 -136860909 + MER46B DNA MER2_type 8 236 0 246 320 104 32 chrX 40113878 40114003 -136860137 - L2 LINE L2 0 3272 3139 218 277 161 19 chrX 40114058 40114213 -136859927 - MIR SINE MIR -29 233 57 277 174 71 82 chrX 40114933 40115031 -136859109 - MIR SINE MIR -79 183 87 355 139 16 30 chrX 40118053 40118120 -136856020 + AluJ/FRAM SINE Alu 232 282 -20 38 75 0 0 chrX 40118716 40118796 -136855344 + AT_rich Low_complexity Low_complexity 1 80 0 82 48 0 0 chrX 40118907 40119031 -136855109 + AT_rich Low_complexity Low_complexity 1 124 0 1543 158 18 32 chrX 40119061 40119346 -136854794 - AluJo SINE Alu -31 281 1 195 42 0 0 chrX 40119624 40119648 -136854492 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 797 223 67 10 chrX 40119705 40119898 -136854242 - MER105 DNA DNA 0 204 1 461 256 58 7 chrX 40119965 40120102 -136854038 + L1M4 LINE L1 6 149 -6393 1919 107 7 21 chrX 40120164 40120445 -136853695 + AluSx SINE Alu 1 277 -35 296 241 0 13 chrX 40120471 40120550 -136853590 + L1ME LINE L1 5667 5744 -377 499 325 119 17 chrX 40120653 40121074 -136853066 - L1M4 LINE L1 -1010 5136 4673 22 35 0 0 chrX 40121699 40121728 -136852412 + AT_rich Low_complexity Low_complexity 1 29 0 1639 71 0 5 chrX 40121882 40122093 -136852047 + AluY SINE Alu 97 306 -5 586 180 112 112 chrX 40122337 40122515 -136851625 + MER5A DNA MER1_type 1 178 -11 356 200 158 14 chrX 40122803 40123017 -136851123 + L1ME4a LINE L1 5198 5443 -719 353 231 89 0 chrX 40123089 40123229 -136850911 + L1MC/D LINE L1 5684 5843 -319 245 309 49 24 chrX 40123531 40123654 -136850486 - MIR SINE MIR -14 248 123 1954 136 0 3 chrX 40123813 40124100 -136850040 + AluJb SINE Alu 9 294 -18 641 136 291 41 chrX 40125659 40125909 -136848231 - Tigger7 DNA MER2_type -10 2477 1 366 271 50 48 chrX 40126074 40126317 -136847823 - L1MA1 LINE L1 -285 5885 5639 412 283 127 9 chrX 40126322 40126534 -136847606 - L1ME LINE L1 -612 5558 5322 2210 113 0 7 chrX 40127079 40127380 -136846760 - AluSq SINE Alu -14 299 1 1817 167 0 23 chrX 40127547 40127853 -136846287 - AluJb SINE Alu -13 299 1 1150 44 0 0 chrX 40129329 40129466 -136844674 + AluY SINE Alu 170 306 -5 285 29 0 0 chrX 40129466 40129500 -136844640 + (TA)n Simple_repeat Simple_repeat 2 35 0 1947 141 7 0 chrX 40129893 40130177 -136843963 - AluJo SINE Alu -26 286 1 233 49 73 0 chrX 40132245 40132286 -136841854 + A-rich Low_complexity Low_complexity 2 45 0 317 338 76 13 chrX 40132800 40132957 -136841183 + MIR SINE MIR 2 168 -94 182 265 48 60 chrX 40133082 40133165 -136840975 + MIR SINE MIR 107 188 -74 2392 295 43 38 chrX 40133361 40134228 -136839912 - ERVL LTR ERVL -2141 3623 2753 322 200 0 0 chrX 40134520 40134585 -136839555 + L1ME4a LINE L1 5594 5658 -463 1063 146 9 59 chrX 40134879 40135099 -136839041 - L1MA10 LINE L1 -15 6319 6111 1013 206 144 23 chrX 40135101 40135407 -136838733 + MER2 DNA MER2_type 2 344 -1 1202 189 28 12 chrX 40135412 40135660 -136838480 - L1MB1 LINE L1 -82 6107 5856 1040 165 13 43 chrX 40135662 40135892 -136838248 + L1M3 LINE L1 5254 5476 -692 1414 142 9 0 chrX 40136672 40136891 -136837249 + AluJb SINE Alu 87 307 -5 287 241 342 0 chrX 40136998 40137156 -136836984 - MIR SINE MIR -30 232 21 22 0 0 0 chrX 40137723 40137745 -136836395 + AT_rich Low_complexity Low_complexity 1 22 0 326 304 93 37 chrX 40138214 40138484 -136835656 + L1ME4a LINE L1 5630 5914 -207 808 239 10 15 chrX 40139518 40139723 -136834417 + L1M4 LINE L1 4049 4252 -1894 1461 97 18 26 chrX 40139767 40139817 -136834323 + AluY SINE Alu 83 132 -179 2142 112 0 7 chrX 40139817 40140113 -136834027 + AluSc SINE Alu 4 297 -12 1461 97 18 26 chrX 40140113 40140288 -136833852 + AluY SINE Alu 132 306 -5 1447 201 110 44 chrX 40140291 40140818 -136833322 + L1M4 LINE L1 4490 5051 -1095 6767 180 49 22 chrX 40140822 40141012 -136833128 + L1MC1 LINE L1 3885 4068 -2265 1530 102 195 12 chrX 40141012 40141258 -136832882 + AluSg1 SINE Alu 1 291 -18 6767 180 49 22 chrX 40141258 40141488 -136832652 + L1MC1 LINE L1 4068 4290 -2043 2503 59 0 3 chrX 40141488 40141793 -136832347 + AluY SINE Alu 1 304 -7 6767 180 49 22 chrX 40141793 40143605 -136830535 + L1MC1 LINE L1 4290 6333 0 341 291 159 11 chrX 40144579 40144761 -136829379 - MIR SINE MIR -48 214 6 2605 47 0 0 chrX 40144765 40145064 -136829076 - AluY SINE Alu -12 299 1 479 216 196 7 chrX 40145812 40145960 -136828180 + MER5A DNA MER1_type 13 188 -1 374 250 59 52 chrX 40145960 40146073 -136828067 + MIR SINE MIR 28 141 -121 235 293 52 0 chrX 40146331 40146389 -136827751 + L2 LINE L2 3248 3308 -5 * 336 341 104 0 chrX 40146385 40146549 -136827591 - L2 LINE L2 -1039 2275 2095 656 133 108 25 chrX 40146549 40146669 -136827471 + AluJb SINE Alu 1 130 -182 349 312 209 24 chrX 40146676 40146961 -136827179 - L2 LINE L2 -1194 2120 1761 2220 95 0 0 chrX 40146961 40147244 -136826896 + AluSq SINE Alu 1 283 -30 349 312 209 24 chrX 40147244 40147298 -136826842 - L2 LINE L2 -1553 1761 1718 1868 151 0 17 chrX 40147785 40148083 -136826057 - AluJb SINE Alu -19 293 1 226 226 75 0 chrX 40148780 40148833 -136825307 - MIR SINE MIR -172 90 34 660 60 0 180 chrX 40149591 40149741 -136824399 + AluJo SINE Alu 13 135 -177 242 265 42 89 chrX 40149872 40150014 -136824126 - MER5A DNA MER1_type -32 157 4 430 209 93 29 chrX 40150061 40150200 -136823940 + L1MC5 LINE L1 7760 7907 -54 224 268 98 71 chrX 40150496 40150608 -136823532 + L2 LINE L2 3140 3254 -18 2008 144 39 8 chrX 40151043 40151398 -136822742 - MER47A DNA MER2_type 0 366 1 2362 97 0 0 chrX 40151892 40152190 -136821950 + AluSg SINE Alu 1 298 -12 404 227 213 7 chrX 40152242 40152383 -136821757 + MIR SINE MIR 6 175 -87 185 311 14 14 chrX 40152892 40152966 -136821174 + MIR SINE MIR 151 224 -38 288 345 94 47 chrX 40154060 40154231 -136819909 + MIR3 SINE MIR 7 185 -23 225 237 0 0 chrX 40154538 40154597 -136819543 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 228 214 0 0 chrX 40154738 40154780 -136819360 + L1ME LINE L1 5560 5601 -520 1346 106 19 14 chrX 40154810 40155018 -136819122 + L1PB1 LINE L1 5942 6150 -1 245 135 135 0 chrX 40155179 40155231 -136818909 + L1ME LINE L1 5762 5820 -301 2488 45 7 13 chrX 40155239 40155547 -136818593 + AluY SINE Alu 1 306 -5 287 171 132 0 chrX 40155716 40155792 -136818348 + L1ME4a LINE L1 5762 5847 -274 503 261 107 38 chrX 40155877 40155996 -136818144 + L1MC4 LINE L1 7694 7803 -239 2384 78 14 0 chrX 40155996 40156290 -136817850 - AluSx SINE Alu -14 298 1 503 261 107 38 chrX 40156290 40156488 -136817652 + L1MC4 LINE L1 7803 8033 -9 23 0 0 0 chrX 40156848 40156871 -136817269 + AT_rich Low_complexity Low_complexity 1 23 0 1370 158 186 47 chrX 40157026 40157209 -136816931 - MER46B DNA MER2_type -2495 236 114 689 159 0 0 chrX 40157209 40157316 -136816824 - L1PB4 LINE L1 -12 6144 6038 1370 158 186 47 chrX 40157316 40157449 -136816691 - MER46B DNA MER2_type -2617 114 1 232 267 111 41 chrX 40157703 40157875 -136816265 - L1ME LINE L1 -538 5583 5400 237 128 43 21 chrX 40157998 40158045 -136816095 + L1ME4a LINE L1 5983 6030 -91 210 203 169 17 chrX 40158515 40158574 -136815566 + L2 LINE L2 3242 3309 -4 * 324 228 51 0 chrX 40158573 40158652 -136815488 - MIR SINE MIR -108 154 72 226 287 53 21 chrX 40158683 40158777 -136815363 - MIR SINE MIR -40 222 126 281 296 167 9 chrX 40159261 40159369 -136814771 + L2 LINE L2 3143 3267 -5 256 249 301 12 chrX 40159935 40160108 -136814032 - MIR SINE MIR -6 256 34 1635 191 82 77 chrX 40160297 40160908 -136813232 + L1MC5 LINE L1 6754 7367 -594 834 147 35 7 chrX 40160909 40161052 -136813088 + MER5A DNA MER1_type 43 189 0 * 954 230 24 19 chrX 40161052 40161260 -136812880 - MIR SINE MIR -46 216 8 22 0 0 0 chrX 40161322 40161344 -136812796 + AT_rich Low_complexity Low_complexity 1 22 0 248 247 78 0 chrX 40161715 40161792 -136812348 - L3 LINE CR1 -10 1567 1485 966 246 67 30 chrX 40162807 40163237 -136810903 + L1MC5 LINE L1 7372 7817 -144 832 139 0 29 chrX 40163237 40163374 -136810766 + AluJb SINE Alu 1 133 -179 339 203 120 15 chrX 40163386 40163519 -136810621 + L1MC5 LINE L1 7801 7947 -14 2407 47 7 0 chrX 40164895 40165170 -136808970 + AluSc SINE Alu 21 297 -12 189 0 0 0 chrX 40165921 40165942 -136808198 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 255 218 184 0 chrX 40165944 40166031 -136808109 - MIR SINE MIR -76 186 84 285 176 88 33 chrX 40168400 40168491 -136805649 + L1MC/D LINE L1 5375 5470 -2338 358 289 132 36 chrX 40168860 40169247 -136804893 - L1M4 LINE L1 -1396 4750 4327 1301 253 38 38 chrX 40169279 40169698 -136804442 + L1MC/D LINE L1 5376 5794 -2014 208 193 70 0 chrX 40170359 40170416 -136803724 + (CCCCAG)n Simple_repeat Simple_repeat 2 62 0 187 191 21 0 chrX 40170821 40170868 -136803272 + MIR SINE MIR 205 252 -10 1840 123 11 18 chrX 40171340 40171617 -136802523 - AluJb SINE Alu -18 294 20 615 257 72 116 chrX 40171779 40172150 -136801990 - L1MC4a LINE L1 -215 5906 5635 1852 119 7 70 chrX 40172150 40172452 -136801688 - AluJb SINE Alu -18 294 12 615 257 72 116 chrX 40172452 40172682 -136801458 - L1MC4a LINE L1 -486 5635 5396 1560 116 38 96 chrX 40172687 40173095 -136801045 - AluJo SINE Alu 0 397 7 464 309 102 37 chrX 40173332 40173734 -136800406 - L1MC4a LINE L1 -3039 3107 2680 562 177 0 10 chrX 40173833 40173929 -136800211 - FRAM SINE Alu -10 166 72 2211 109 0 28 chrX 40173978 40174298 -136799842 - AluSx SINE Alu -1 311 1 23 0 0 0 chrX 40174643 40174666 -136799474 + AT_rich Low_complexity Low_complexity 1 23 0 381 274 26 9 chrX 40174842 40174955 -136799185 + L2 LINE L2 3148 3262 -10 184 151 132 38 chrX 40174959 40175012 -136799128 - MIR SINE MIR -112 150 93 852 295 56 40 chrX 40175137 40176066 -136798074 - L1ME LINE L1 -376 5745 4801 461 213 109 20 chrX 40176068 40176243 -136797897 + MIR SINE MIR 12 246 -16 2450 214 73 25 chrX 40176470 40176543 -136797597 + L1M4 LINE L1 4180 4248 -1898 312 27 0 0 chrX 40176543 40176580 -136797560 + (CA)n Simple_repeat Simple_repeat 1 37 0 2450 214 73 25 chrX 40176580 40177147 -136796993 + L1M4 LINE L1 4248 4851 -1295 462 124 124 0 chrX 40177148 40177237 -136796903 + L1M4 LINE L1 4964 5063 -1083 1406 78 0 6 chrX 40177242 40177421 -136796719 - AluSp SINE Alu -2 311 134 2121 125 7 0 chrX 40177421 40177718 -136796422 - AluSx SINE Alu -13 299 1 667 225 99 31 chrX 40177718 40177940 -136796200 + L1ME1 LINE L1 5905 6141 -25 1004 247 118 35 chrX 40178164 40178559 -136795581 - MLT1L LTR MaLR -45 542 144 781 160 88 11 chrX 40178559 40178740 -136795400 + MER5C DNA MER1_type 5 199 -125 290 300 0 27 chrX 40178751 40178861 -136795279 - MLT1L LTR MaLR -508 107 1 618 209 29 112 chrX 40179255 40179347 -136794793 + MER112 DNA MER1_type 2 100 -156 369 0 0 0 chrX 40179347 40179388 -136794752 + (CA)n Simple_repeat Simple_repeat 2 42 0 618 209 29 112 chrX 40179388 40179573 -136794567 + MER112 DNA MER1_type 100 256 0 788 269 21 21 chrX 40180201 40180439 -136793701 - Charlie8 DNA MER1_type -2173 244 7 7979 17 0 1 chrX 40182013 40183508 -136790632 - L1PA2 LINE L1 -5 6150 4657 220 133 0 22 chrX 40183532 40183577 -136790563 + (CAAAAA)n Simple_repeat Simple_repeat 4 47 0 420 207 73 73 chrX 40183966 40184145 -136789995 + L1MC5 LINE L1 7732 7910 -51 2596 196 84 25 chrX 40184647 40185219 -136788921 + MLT1E2 LTR MaLR 21 626 0 2192 101 0 7 chrX 40185320 40185616 -136788524 - AluSx SINE Alu -18 294 1 462 307 93 20 chrX 40186051 40186505 -136787635 + MLT1J LTR MaLR 3 511 0 1921 139 3 20 chrX 40186576 40186870 -136787270 + AluJo SINE Alu 1 289 -23 1230 179 128 12 chrX 40186908 40187165 -136786975 + AluSg1 SINE Alu 1 287 -22 709 233 108 85 chrX 40187247 40187327 -136786813 - L1MC4 LINE L1 0 8042 7965 2070 104 9 57 chrX 40187327 40187644 -136786496 - AluSx SINE Alu -10 302 1 709 233 108 85 chrX 40187644 40188000 -136786140 - L1MC4 LINE L1 -77 7965 7596 424 298 0 35 chrX 40188266 40188340 -136785800 + L1M1 LINE L1 5416 5491 -678 2411 88 3 0 chrX 40188340 40188647 -136785493 + AluSp SINE Alu 1 308 -5 424 298 0 35 chrX 40188647 40188789 -136785351 + L1M1 LINE L1 5491 5622 -547 272 258 108 8 chrX 40188757 40188877 -136785263 + L1ME3A LINE L1 5764 5895 -275 * 299 252 75 0 chrX 40189058 40189165 -136784975 + L1MC4 LINE L1 7928 8042 0 1333 226 152 18 chrX 40189564 40189953 -136784187 + MLT1E2 LTR MaLR 19 459 -167 907 128 28 7 chrX 40189953 40190094 -136784046 + MER101 LTR ERV1 1 144 -330 1346 117 0 39 chrX 40190094 40190299 -136783841 - AluSg/x SINE Alu -14 296 100 2242 94 11 0 chrX 40190398 40190696 -136783444 - AluSx SINE Alu 0 303 3 1165 147 13 89 chrX 40190696 40190921 -136783219 + MER101 LTR ERV1 134 341 -133 781 184 0 0 chrX 40190923 40191048 -136783092 + FRAM SINE Alu 4 128 -48 882 102 23 0 chrX 40191094 40191222 -136782918 + MER101 LTR ERV1 344 474 0 759 156 23 0 chrX 40191231 40191359 -136782781 + MLT1D LTR MaLR 375 505 0 2492 87 0 0 chrX 40191529 40191838 -136782302 - AluSg SINE Alu -1 309 1 2126 104 10 10 chrX 40192311 40192608 -136781532 - AluJb SINE Alu -15 297 1 1755 146 65 4 chrX 40192636 40192911 -136781229 - AluJo SINE Alu -20 292 1 525 266 80 13 chrX 40192938 40193164 -136780976 - L1ME4a LINE L1 -4 6117 5877 471 211 139 53 chrX 40193223 40193431 -136780709 - L1MC4 LINE L1 -312 7730 7505 2407 81 3 0 chrX 40194200 40194497 -136779643 + AluSq SINE Alu 1 298 -15 2148 143 2 56 chrX 40194531 40194875 -136779265 + MLT1B LTR MaLR 1 321 -69 2487 66 10 3 chrX 40194875 40195179 -136778961 - AluSc SINE Alu -3 306 1 2148 143 2 56 chrX 40195179 40195246 -136778894 + MLT1B LTR MaLR 321 390 0 768 203 7 7 chrX 40195304 40195457 -136778683 - MER5B DNA MER1_type -25 153 1 2085 149 0 9 chrX 40195727 40196042 -136778098 - AluJb SINE Alu 0 312 1 866 124 0 16 chrX 40196169 40196298 -136777842 + FLAM_C SINE Alu 1 127 -6 1826 180 0 3 chrX 40196310 40196610 -136777530 + AluJo SINE Alu 1 299 -13 2405 65 0 0 chrX 40196787 40197077 -136777063 - AluY SINE Alu -21 290 1 574 181 19 0 chrX 40197084 40197189 -136776951 - FLAM_A SINE Alu -18 124 18 530 208 46 8 chrX 40197213 40197343 -136776797 - L1ME1 LINE L1 -17 6149 6015 1313 223 150 28 chrX 40198192 40198685 -136775455 - LTR67 LTR ERVL -1 556 4 1014 251 135 39 chrX 40200113 40200572 -136773568 + MLT1L LTR MaLR 5 507 -108 279 0 0 0 chrX 40200652 40200683 -136773457 + (TG)n Simple_repeat Simple_repeat 2 32 0 2170 116 3 0 chrX 40201388 40201682 -136772458 + AluSx SINE Alu 1 295 -17 540 292 56 0 chrX 40201997 40202175 -136771965 - MER5A DNA MER1_type -1 188 1 616 112 11 0 chrX 40202480 40202569 -136771571 - L1MC2 LINE L1 -8 6336 6247 2390 93 3 0 chrX 40202733 40203034 -136771106 + AluSx SINE Alu 1 302 -10 225 193 263 35 chrX 40203073 40203187 -136770953 - L1MA10 LINE L1 -1 6333 6194 2131 153 52 30 chrX 40203190 40203735 -136770405 - MLT2A2 LTR ERVL 0 554 1 2218 124 0 0 chrX 40203758 40204049 -136770091 - AluSx SINE Alu -21 291 1 2624 204 36 88 chrX 40204049 40204272 -136769868 - L1ME1 LINE L1 -143 6023 5790 1560 156 24 73 chrX 40204272 40204600 -136769540 - AluJo SINE Alu 0 312 1 2624 204 36 88 chrX 40204600 40204817 -136769323 - L1ME1 LINE L1 -376 5790 5563 10538 68 14 16 chrX 40204817 40206206 -136767934 + SVA Other Other 1 1386 0 2624 204 36 88 chrX 40206206 40206573 -136767567 - L1ME1 LINE L1 -603 5563 5257 788 186 53 75 chrX 40206574 40206627 -136767513 + MSTB1 LTR MaLR 1 54 -372 2589 61 0 3 chrX 40206627 40206938 -136767202 + AluY SINE Alu 1 310 -1 788 186 53 75 chrX 40206938 40207072 -136767068 + MSTB1 LTR MaLR 54 184 -242 873 150 0 0 chrX 40207086 40207219 -136766921 - AluJo SINE Alu -178 134 2 1318 188 53 0 chrX 40207220 40207465 -136766675 + MSTB1 LTR MaLR 175 432 0 8570 189 27 12 chrX 40207465 40207808 -136766332 + MSTB1-int LTR MaLR 1 337 -1314 2386 75 0 0 chrX 40207808 40208102 -136766038 + AluY SINE Alu 1 294 -17 8570 189 27 12 chrX 40208102 40208215 -136765925 + MSTB1-int LTR MaLR 337 447 -1204 2179 130 3 0 chrX 40208215 40208515 -136765625 + AluSq SINE Alu 1 301 -12 8570 189 27 12 chrX 40208515 40209601 -136764539 + MSTB1-int LTR MaLR 447 1572 -79 1739 158 10 17 chrX 40209601 40209893 -136764247 + AluJb SINE Alu 15 304 -8 8570 189 27 12 chrX 40209893 40209975 -136764165 + MSTB1-int LTR MaLR 1572 1651 0 1751 155 81 71 chrX 40209989 40210269 -136763871 + MSTB1 LTR MaLR 36 312 -120 196 0 118 0 chrX 40210269 40210303 -136763837 + T-rich Low_complexity Low_complexity 3 40 0 1753 136 21 21 chrX 40210303 40210583 -136763557 - AluJo SINE Alu -32 280 1 1751 155 81 71 chrX 40210583 40210694 -136763446 + MSTB1 LTR MaLR 311 432 0 1559 177 0 23 chrX 40210695 40210960 -136763180 + Tigger7 DNA MER2_type 9 267 -466 628 180 0 0 chrX 40210957 40211057 -136763083 + Tigger7 DNA MER2_type 2488 2587 0 * 569 192 42 0 chrX 40211057 40211177 -136762963 - L1ME1 LINE L1 -878 5268 5144 2350 97 10 10 chrX 40211268 40211577 -136762563 + AluSp SINE Alu 1 309 -4 1219 209 69 69 chrX 40211579 40211620 -136762520 - MLT1L LTR MaLR -58 557 517 1407 145 44 4 chrX 40211620 40211847 -136762293 - MER46A DNA MER2_type 0 236 1 1219 209 69 69 chrX 40211847 40212183 -136761957 - MLT1L LTR MaLR -97 518 180 988 183 18 0 chrX 40212197 40212366 -136761774 + MER58 DNA MER1_type 1 172 -2248 295 202 34 79 chrX 40212368 40212457 -136761683 - MSTB LTR MaLR -159 273 189 575 97 9 35 chrX 40212457 40212570 -136761570 + (TTCC)n Simple_repeat Simple_repeat 4 113 0 2018 124 30 7 chrX 40212585 40212884 -136761256 - AluSx SINE Alu -6 306 1 712 248 13 0 chrX 40212885 40213038 -136761102 - MSTB LTR MaLR -227 199 45 1599 123 0 0 chrX 40213038 40213257 -136760883 + AluSx SINE Alu 1 219 -93 668 174 0 9 chrX 40213292 40213401 -136760739 + Tigger3(Golem) DNA MER2_type 1 108 -2921 6778 64 20 0 chrX 40413411 40414509 -136559631 - L1PA7 LINE L1 0 6154 5051 1026 121 15 65 chrX 40414610 40414809 -136559331 - LTR1B LTR ERV1 -637 189 1 306 261 128 71 chrX 40414859 40415070 -136559070 + L1MC3 LINE L1 1064 1286 -5130 403 118 47 24 chrX 40415348 40415433 -136558707 - L1MB4 LINE L1 -3 6177 6091 2299 106 0 6 chrX 40415990 40416301 -136557839 - AluSx SINE Alu -3 309 1 2408 75 0 3 chrX 40416616 40416921 -136557219 + AluY SINE Alu 1 304 -7 982 141 50 15 chrX 40417311 40417510 -136556630 - MLT1B LTR MaLR -1 389 184 241 271 14 29 chrX 40417596 40417666 -136556474 - MER5B DNA MER1_type -32 146 78 21 36 0 0 chrX 40417686 40417714 -136556426 + AT_rich Low_complexity Low_complexity 1 28 0 225 65 0 0 chrX 40417761 40417792 -136556348 + Alu SINE Alu 2 32 -270 299 223 123 15 chrX 40417907 40418037 -136556103 + L1MC3 LINE L1 2132 2275 -4151 1582 268 42 71 chrX 40418076 40418935 -136555205 + L1MC3 LINE L1 4462 5257 -1444 2237 100 0 13 chrX 40418935 40419245 -136554895 + AluSg SINE Alu 1 306 -4 1582 268 42 71 chrX 40419245 40419922 -136554218 + L1MC3 LINE L1 5257 5952 -749 258 191 15 15 chrX 40419924 40419992 -136554148 - MER92B LTR ERV1 0 636 569 257 175 0 35 chrX 40420018 40420075 -136554065 + L1MC3 LINE L1 6280 6335 -290 403 216 36 36 chrX 40420077 40420216 -136553924 + MLT1A2 LTR MaLR 2 140 -234 574 205 72 6 chrX 40420347 40420513 -136553627 + LTR1B LTR ERV1 650 826 0 434 290 95 12 chrX 40421187 40421356 -136552784 + MIR SINE MIR 78 260 -2 534 262 148 5 chrX 40421743 40421956 -136552184 - MER45C DNA AcHobo -8 945 703 1090 260 64 14 chrX 40421960 40422321 -136551819 - MER45C DNA AcHobo -574 379 1 223 143 171 14 chrX 40422322 40422392 -136551748 + MIR SINE MIR 68 148 -114 198 103 0 0 chrX 40422395 40422424 -136551716 + (A)n Simple_repeat Simple_repeat 1 29 0 1137 208 50 36 chrX 40422459 40423009 -136551131 + LTR27 LTR ERV1 1 634 -2 2707 119 39 30 chrX 40423082 40423681 -136550459 + MER4E LTR ERV1 1 779 0 4180 147 53 42 chrX 40423681 40424408 -136549732 + MER4E-int LTR ERV1 1 719 -1067 2211 116 0 0 chrX 40424408 40424700 -136549440 - AluSx SINE Alu -20 292 1 4180 147 53 42 chrX 40424700 40425067 -136549073 + MER4E-int LTR ERV1 719 1360 -426 186 43 0 0 chrX 40425067 40425090 -136549050 + (TG)n Simple_repeat Simple_repeat 2 24 0 4180 147 53 42 chrX 40425090 40425113 -136549027 + MER4E-int LTR ERV1 1360 1381 -405 255 171 24 37 chrX 40425093 40425175 -136548965 + MER4B-int LTR ERV1 580 660 -4355 * 7915 122 61 41 chrX 40425181 40425441 -136548699 + MER4B-int LTR ERV1 1346 1599 -5159 438 19 0 0 chrX 40425441 40425495 -136548645 + L1PA3 LINE L1 6099 6152 -3 7915 122 61 41 chrX 40425495 40425872 -136548268 + MER4B-int LTR ERV1 1599 1967 -4791 1924 156 0 13 chrX 40425872 40426173 -136547967 + AluSx SINE Alu 1 297 -15 7915 122 61 41 chrX 40426173 40426342 -136547798 + MER4B-int LTR ERV1 1967 2131 -4627 2399 81 3 7 chrX 40426342 40426652 -136547488 - AluSg1 SINE Alu 0 309 1 7915 122 61 41 chrX 40426652 40428269 -136545871 + MER4B-int LTR ERV1 2131 3003 -3755 2340 76 3 7 chrX 40428269 40428570 -136545570 + AluSc SINE Alu 10 309 0 7915 122 61 41 chrX 40428570 40428665 -136545475 + MER4B-int LTR ERV1 3003 3095 -3663 4090 116 33 29 chrX 40428651 40429316 -136544824 + MER4B-int LTR ERV1 3421 4088 -2670 * 12011 100 27 4 chrX 40429315 40431119 -136543021 + MER4B-int LTR ERV1 4452 6295 -463 336 219 0 0 chrX 40434349 40434413 -136539727 + MER6B DNA MER2_type 11 74 -202 581 200 0 8 chrX 40434560 40434680 -136539460 + MER6B DNA MER2_type 92 210 0 966 151 6 19 chrX 40434752 40434911 -136539229 - AluJb SINE Alu -19 293 137 414 0 0 0 chrX 40437193 40437239 -136536901 + (TG)n Simple_repeat Simple_repeat 2 47 0 1723 107 9 0 chrX 40438238 40438471 -136535669 - AluSq SINE Alu -14 299 65 230 318 20 81 chrX 40439384 40439532 -136534608 + MIR SINE MIR 92 230 -32 344 246 170 28 chrX 40439791 40440095 -136534045 + MLT1J LTR MaLR 110 526 -89 390 313 38 23 chrX 40440137 40440268 -136533872 - MER5B DNA MER1_type -5 173 41 1222 232 38 51 chrX 40440323 40440530 -136533610 - L1MC5 LINE L1 -106 7855 7647 1883 143 7 7 chrX 40440530 40440817 -136533323 + AluJb SINE Alu 1 287 -25 1222 232 38 51 chrX 40440817 40441139 -136533001 - L1MC5 LINE L1 -314 7647 7333 1249 279 117 50 chrX 40441167 40442728 -136531412 - L1MC5 LINE L1 -733 7228 5545 268 204 140 32 chrX 40442897 40442990 -136531150 + L2 LINE L2 3168 3270 -2 383 316 155 11 chrX 40443104 40443382 -136530758 - L2 LINE L2 0 3313 2996 253 129 0 97 chrX 40443569 40443631 -136530509 - AluSp SINE Alu -116 187 132 538 310 77 38 chrX 40443799 40444521 -136529619 + L1MC/D LINE L1 2393 3223 -2923 394 314 78 33 chrX 40444601 40444907 -136529233 + L1MC/D LINE L1 3256 3575 -2571 723 273 71 66 chrX 40444941 40445291 -136528849 + L1MC/D LINE L1 3586 3933 -2278 213 94 0 0 chrX 40445291 40445323 -136528817 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 723 273 71 66 chrX 40445323 40446839 -136527301 + L1MC/D LINE L1 3933 5463 -748 954 152 6 12 chrX 40448502 40448673 -136525467 + MER2 DNA MER2_type 1 170 -175 265 164 0 55 chrX 40448777 40448832 -136525308 + MER2 DNA MER2_type 294 345 0 927 241 94 67 chrX 40449326 40450238 -136523902 + L1MC5 LINE L1 6889 7825 -136 1580 110 0 47 chrX 40450239 40450475 -136523665 + AluSg SINE Alu 1 225 -85 291 125 0 0 chrX 40450575 40450623 -136523517 + Alu SINE Alu 254 301 -1 5379 93 42 39 chrX 40450630 40450986 -136523154 + Tigger3b DNA MER2_type 268 621 -2407 2254 95 7 0 chrX 40450986 40451282 -136522858 - AluSp SINE Alu -15 298 1 5379 93 42 39 chrX 40451282 40451572 -136522568 + Tigger3b DNA MER2_type 621 909 -2119 2268 105 0 3 chrX 40451572 40451876 -136522264 - AluSq SINE Alu -10 303 1 5379 93 42 39 chrX 40451876 40452182 -136521958 + Tigger3b DNA MER2_type 909 1224 -7 4274 188 33 7 chrX 40452329 40453186 -136520954 + HERVL74 LTR ERVL 1217 2095 -3590 4699 216 20 30 chrX 40453343 40454582 -136519558 + HERVL74 LTR ERVL 2100 3556 0 1315 209 70 21 chrX 40454585 40454968 -136519172 + LTR52 LTR ERVL 8 409 -12 8220 216 51 73 chrX 40454970 40456077 -136518063 - L1M3 LINE L1 -730 6261 5131 2551 121 5 27 chrX 40456077 40456515 -136517625 - L1MA6 LINE L1 0 6300 5873 8220 216 51 73 chrX 40456515 40456870 -136517270 - L1M3 LINE L1 -1860 5131 4770 1986 122 4 0 chrX 40456870 40457149 -136516991 - AluJb SINE Alu -30 282 3 8220 216 51 73 chrX 40457149 40459451 -136514689 - L1M3 LINE L1 -2221 4770 2581 1615 238 36 30 chrX 40459526 40460157 -136513983 - L1M3 LINE L1 -4543 2416 1782 264 30 0 0 chrX 40460166 40460199 -136513941 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 282 24 0 chrX 40460199 40460284 -136513856 - L1MC4 LINE L1 -1341 6701 6615 310 294 0 22 chrX 40460203 40460295 -136513845 + L1MC4 LINE L1 6614 6703 -1339 * 351 0 0 0 chrX 40460324 40460363 -136513777 + (TG)n Simple_repeat Simple_repeat 2 40 0 370 244 61 9 chrX 40460367 40460482 -136513658 - L1M3 LINE L1 -5088 1767 1647 1024 222 23 30 chrX 40460486 40460788 -136513352 - LTR55 LTR ERV -2 546 247 881 117 29 18 chrX 40460788 40460959 -136513181 - LTR54 LTR ERV1 0 510 338 1745 245 159 0 chrX 40460959 40461474 -136512666 - L1M3 LINE L1 -5625 1230 634 396 226 199 33 chrX 40461549 40461730 -136512410 - L1M3 LINE L1 -6636 223 13 872 210 38 30 chrX 40461740 40462002 -136512138 - L1M4 LINE L1 -1038 5108 4845 3027 169 27 22 chrX 40462006 40462605 -136511535 + L1MC1 LINE L1 5304 5905 -428 833 148 28 0 chrX 40462605 40462747 -136511393 + AluSg/x SINE Alu 163 308 -4 2586 148 5 9 chrX 40462747 40463185 -136510955 + L1MC1 LINE L1 5893 6328 -5 780 277 15 7 chrX 40463275 40463549 -136510591 - L1M4 LINE L1 -1286 4860 4585 612 268 88 19 chrX 40463567 40463978 -136510162 - L1MEc LINE L1 -4271 2474 2036 408 209 36 36 chrX 40464032 40464171 -136509969 - L1MEc LINE L1 -5901 144 6 758 223 42 24 chrX 40464196 40464483 -136509657 - MER33 DNA MER1_type -31 293 2 222 333 76 28 chrX 40464489 40464738 -136509402 - L2 LINE L2 -1134 2180 1920 261 163 0 0 chrX 40464766 40464815 -136509325 + (TG)n Simple_repeat Simple_repeat 1 49 0 257 262 75 16 chrX 40464826 40465013 -136509127 + L1ME3A LINE L1 4860 5057 -1089 651 294 109 49 chrX 40465050 40465709 -136508431 + L1ME3A LINE L1 5262 5960 -210 2220 87 11 0 chrX 40466316 40466618 -136507522 - AluSc SINE Alu 0 305 1 1954 125 6 45 chrX 40466779 40467091 -136507049 - AluSx SINE Alu -12 300 1 1359 187 12 4 chrX 40467093 40467344 -136506796 - Tigger3(Golem) DNA MER2_type -2776 253 1 1082 257 167 60 chrX 40467366 40468239 -136505901 - LTR52-int LTR ERVL -2587 969 3 1667 188 42 72 chrX 40468240 40468617 -136505523 - LTR52 LTR ERVL -2 419 55 2310 100 3 0 chrX 40468617 40468918 -136505222 + AluSp SINE Alu 1 302 -11 1667 188 42 72 chrX 40468918 40468972 -136505168 - LTR52 LTR ERVL -366 55 1 2772 152 22 29 chrX 40468973 40469525 -136504615 + L1MB7 LINE L1 5452 5999 -185 243 0 0 0 chrX 40469735 40469762 -136504378 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 309 0 0 0 chrX 40469762 40469799 -136504341 - L1PA4 LINE L1 -8 6147 6111 210 319 7 92 chrX 40469801 40469942 -136504198 + L2 LINE L2 3023 3151 -121 215 377 49 16 chrX 40470264 40470447 -136503693 + L2 LINE L2 207 395 -2919 328 320 40 32 chrX 40471348 40471473 -136502667 + L2 LINE L2 3145 3270 -2 1109 222 47 68 chrX 40471606 40472192 -136501948 + L1MC5 LINE L1 6684 7255 -728 541 261 71 74 chrX 40472293 40472522 -136501618 + L1MC5 LINE L1 7260 7488 -473 2253 59 0 14 chrX 40472522 40472837 -136501303 + AluY SINE Alu 1 311 0 541 261 71 74 chrX 40472837 40473220 -136500920 + L1MC5 LINE L1 7488 7873 -88 1981 147 0 0 chrX 40473220 40473513 -136500627 - AluJo SINE Alu -19 293 1 541 261 71 74 chrX 40473513 40473548 -136500592 + L1MC5 LINE L1 7873 7907 -54 276 261 15 46 chrX 40473565 40473695 -136500445 + L1MC4a LINE L1 6850 6975 -833 291 271 42 0 chrX 40473805 40473949 -136500191 + L1MC5 LINE L1 7611 7760 -201 1895 251 100 32 chrX 40473949 40474853 -136499287 + L1ME3A LINE L1 4561 5402 -768 2350 84 0 3 chrX 40474853 40475149 -136498991 + AluSg SINE Alu 1 295 -15 1895 251 100 32 chrX 40475149 40475668 -136498472 + L1ME3A LINE L1 5402 6092 -78 2416 81 3 0 chrX 40475668 40475977 -136498163 + AluSg SINE Alu 1 310 0 1895 251 100 32 chrX 40475977 40476044 -136498096 + L1ME3A LINE L1 6092 6153 -17 462 101 0 0 chrX 40476097 40476166 -136497974 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 255 225 75 33 chrX 40476181 40476301 -136497839 + L1MC4 LINE L1 7914 8038 -4 23 54 0 0 chrX 40476432 40476469 -136497671 + AT_rich Low_complexity Low_complexity 1 37 0 231 293 47 28 chrX 40476534 40476640 -136497500 + MIR SINE MIR 79 186 -76 718 263 43 109 chrX 40477055 40477431 -136496709 + L2 LINE L2 2963 3313 0 248 304 14 0 chrX 40479604 40479673 -136494467 - L2 LINE L2 -1 3271 3202 199 260 20 0 chrX 40479722 40479772 -136494368 + L2 LINE L2 3222 3272 0 1490 190 32 88 chrX 40479870 40479993 -136494147 - L1MEc LINE L1 -3143 3003 2875 2073 138 3 7 chrX 40479993 40480283 -136493857 - AluJo SINE Alu -14 298 10 1490 190 32 88 chrX 40480283 40480716 -136493424 - L1MEc LINE L1 -3271 2875 2478 1731 101 61 3 chrX 40480716 40481013 -136493127 + HSMAR2 DNA Mariner 2 315 -987 712 156 0 0 chrX 40481017 40481126 -136493014 - AluSq/x SINE Alu -180 133 25 864 148 0 0 chrX 40481127 40481255 -136492885 + AluSg/x SINE Alu 147 274 -36 519 60 0 0 chrX 40481261 40481328 -136492812 + (GAAA)n Simple_repeat Simple_repeat 2 68 0 6285 114 19 11 chrX 40481339 40481386 -136492754 + HSMAR2 DNA Mariner 299 344 -958 1793 162 0 59 chrX 40481386 40481707 -136492433 + AluJb SINE Alu 1 302 -10 6285 114 19 11 chrX 40481707 40482471 -136491669 + HSMAR2 DNA Mariner 344 1122 -180 207 0 0 0 chrX 40482471 40482494 -136491646 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 6285 114 19 11 chrX 40482494 40482677 -136491463 + HSMAR2 DNA Mariner 1122 1302 0 645 231 21 54 chrX 40482677 40482835 -136491305 - L1MEc LINE L1 -3666 2480 2318 249 33 0 0 chrX 40482835 40482865 -136491275 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 1721 151 7 21 chrX 40482867 40483152 -136490988 - AluJo SINE Alu -31 281 1 645 231 21 54 chrX 40483152 40483238 -136490902 - L1MEc LINE L1 -3829 2317 2265 5288 208 21 9 chrX 40483594 40484708 -136489432 + L1M4b LINE L1 11 1138 -5721 1854 278 48 14 chrX 40484718 40485546 -136488594 + L1M4b LINE L1 1379 2372 -4766 1807 159 0 36 chrX 40485546 40485855 -136488285 + AluJo SINE Alu 8 305 -7 1854 278 48 14 chrX 40485855 40485966 -136488174 + L1M4b LINE L1 2372 2478 -4660 331 326 7 21 chrX 40486312 40486456 -136487684 + L1M4b LINE L1 2586 2727 -4411 387 215 104 15 chrX 40486927 40487062 -136487078 + L1ME3 LINE L1 6016 6162 0 3967 261 73 22 chrX 40487072 40488467 -136485673 + L1MEc LINE L1 39 1538 -4858 2349 94 13 0 chrX 40488467 40488775 -136485365 - AluSx SINE Alu 0 312 1 3967 261 73 22 chrX 40488775 40489069 -136485071 + L1MEc LINE L1 1538 1815 -4581 2955 235 44 30 chrX 40489116 40489198 -136484942 + L1M4b LINE L1 2808 2887 -4070 2189 107 10 3 chrX 40489198 40489506 -136484634 + AluSp SINE Alu 1 310 -3 2955 235 44 30 chrX 40489506 40489873 -136484267 + L1M4b LINE L1 2887 3248 -3709 2440 81 0 0 chrX 40489873 40490171 -136483969 + AluSq SINE Alu 1 298 -15 2955 235 44 30 chrX 40490171 40490679 -136483461 + L1M4b LINE L1 3248 3748 -3209 1984 86 61 7 chrX 40490679 40490958 -136483182 + AluSc SINE Alu 1 294 -15 2955 235 44 30 chrX 40490958 40491307 -136482833 + L1M4b LINE L1 3748 4091 -2866 2182 105 0 10 chrX 40491329 40491625 -136482515 + AluSc SINE Alu 7 299 -10 477 267 41 51 chrX 40491668 40491863 -136482277 - Charlie8 DNA MER1_type -2199 218 26 863 152 61 18 chrX 40492046 40492211 -136481929 - MER5B DNA MER1_type 0 178 7 192 331 150 16 chrX 40492419 40492546 -136481594 - L2 LINE L2 -4 3268 3125 2302 95 3 10 chrX 40493058 40493364 -136480776 + AluSp SINE Alu 1 304 -9 663 315 31 22 chrX 40493573 40493795 -136480345 - MIR SINE MIR -22 240 17 2180 254 88 18 chrX 40494572 40495387 -136478753 + L1MDa LINE L1 34 1039 -5501 2104 107 0 0 chrX 40495397 40495677 -136478463 + AluSg SINE Alu 14 293 -17 1592 190 60 35 chrX 40495677 40496130 -136478010 + L1MDa LINE L1 1135 1602 -4938 2501 199 30 42 chrX 40496134 40496826 -136477314 + L1MDa LINE L1 1726 2409 -4131 1351 286 55 25 chrX 40496863 40497352 -136476788 + L1MDb LINE L1 31 534 -5875 464 192 59 18 chrX 40497354 40497615 -136476525 + L1MDb LINE L1 1057 1372 -5037 312 200 30 10 chrX 40497618 40497718 -136476422 + L1MDb LINE L1 2484 2585 -3821 * 1392 241 39 32 chrX 40497698 40498203 -136475937 + L1MDb LINE L1 3447 3959 -2447 1866 159 3 3 chrX 40498203 40498509 -136475631 - AluJb SINE Alu 0 306 1 1392 241 39 32 chrX 40498509 40498619 -136475521 + L1MDb LINE L1 3959 4067 -2339 23 0 0 0 chrX 40498679 40498702 -136475438 + AT_rich Low_complexity Low_complexity 1 23 0 251 230 0 81 chrX 40498783 40498857 -136475283 + L2 LINE L2 3246 3313 0 259 315 15 69 chrX 40498914 40499044 -136475096 + MIR SINE MIR 11 133 -129 575 332 21 35 chrX 40499125 40499465 -136474675 - MLT1I LTR MaLR -4 405 71 365 234 21 11 chrX 40499560 40499654 -136474486 + L2 LINE L2 2476 2570 -744 317 81 161 0 chrX 40499731 40499793 -136474347 - MLT2B1 LTR ERVL 0 520 449 1240 183 0 4 chrX 40499793 40500033 -136474107 - Tigger5 DNA MER2_type 0 2323 2085 799 190 0 7 chrX 40500023 40500165 -136473975 - Tigger5 DNA MER2_type -2085 238 98 * 1573 165 32 29 chrX 40500165 40500444 -136473696 - AluJo SINE Alu -26 286 7 688 273 43 51 chrX 40500568 40500824 -136473316 + L2 LINE L2 2561 2814 -500 369 323 75 57 chrX 40500850 40501132 -136473008 + L2 LINE L2 3017 3303 -10 254 246 262 16 chrX 40501135 40501257 -136472883 + L2 LINE L2 3162 3313 0 659 366 32 42 chrX 40501263 40501640 -136472500 - L2 LINE L2 -22 3250 2878 636 278 12 0 chrX 40501646 40501815 -136472325 - MER90 LTR ERV1 0 614 444 358 313 0 9 chrX 40501819 40501931 -136472209 - MER90 LTR ERV1 -486 128 18 988 277 42 37 chrX 40502153 40502611 -136471529 - LTR40c LTR ERVL -5 460 1 2571 112 55 32 chrX 40503540 40504132 -136470008 - MER4E LTR ERV1 0 779 1 2224 109 18 39 chrX 40504132 40504183 -136469957 - MER4E-int LTR ERV1 0 6758 6707 204 40 0 0 chrX 40504183 40504208 -136469932 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2224 109 18 39 chrX 40504208 40504540 -136469600 - MER4E-int LTR ERV1 -51 6707 6383 2363 91 0 26 chrX 40505449 40505756 -136468384 - AluSq SINE Alu -14 299 1 268 214 48 87 chrX 40506653 40506779 -136467361 - L1ME3 LINE L1 -81 6081 5961 1428 230 35 85 chrX 40506863 40507640 -136466500 - L1MC5 LINE L1 -430 7531 6794 705 319 39 0 chrX 40507867 40508096 -136466044 - MIR SINE MIR -2 260 23 243 0 0 0 chrX 40509069 40509096 -136465044 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 221 333 18 35 chrX 40509197 40509311 -136464829 + MIR SINE MIR 23 134 -128 2427 116 19 16 chrX 40509573 40509936 -136464204 - THE1B LTR MaLR 0 364 1 561 219 18 7 chrX 40509940 40510084 -136464056 + MLT1A1 LTR MaLR 248 365 0 814 104 55 77 chrX 40510962 40510990 -136463150 + L1MA8 LINE L1 6112 6139 -152 2343 100 3 0 chrX 40510990 40511291 -136462849 + AluSx SINE Alu 1 302 -10 814 104 55 77 chrX 40511291 40511445 -136462695 + L1MA8 LINE L1 6139 6290 -1 1229 265 58 48 chrX 40511467 40512347 -136461793 + L1MC5 LINE L1 6989 7877 -84 287 344 80 16 chrX 40512399 40512524 -136461616 + MER5B DNA MER1_type 46 178 0 276 229 0 0 chrX 40512789 40512850 -136461290 - MLT1J LTR MaLR -340 171 111 214 343 60 30 chrX 40513089 40513223 -136460917 - MIR SINE MIR -17 245 108 1014 100 47 79 chrX 40513725 40513915 -136460225 - MSTB2 LTR MaLR 0 457 274 2163 128 0 3 chrX 40514374 40514686 -136459454 - AluSx SINE Alu -1 311 1 1929 193 141 75 chrX 40515133 40515901 -136458239 - LTR1B LTR ERV1 -8 818 1 261 311 22 11 chrX 40515928 40516018 -136458122 + L1MDb LINE L1 180 270 -6139 2117 259 38 39 chrX 40516269 40517010 -136457130 + L1MDb LINE L1 681 1420 -4989 1198 225 37 90 chrX 40517066 40517523 -136456617 + L1MC/D LINE L1 1 433 -5612 3526 124 32 0 chrX 40517533 40517940 -136456200 + MER41A LTR ERV1 7 436 -118 1984 122 36 16 chrX 40517940 40518243 -136455897 - AluSq SINE Alu -2 311 3 3526 124 32 0 chrX 40518243 40518366 -136455774 + MER41A LTR ERV1 436 554 0 302 252 54 54 chrX 40518368 40518515 -136455625 + L1MC/D LINE L1 436 582 -5463 2172 130 0 16 chrX 40518515 40518831 -136455309 + AluJb SINE Alu 1 311 -1 839 256 54 19 chrX 40518842 40519158 -136454982 + L1MC/D LINE L1 552 878 -5167 1003 168 23 113 chrX 40519232 40519287 -136454853 + L1MC/D LINE L1 2344 2402 -4162 1416 113 24 5 chrX 40519287 40519500 -136454640 + L1MA3 LINE L1 6084 6300 -5 1003 168 23 113 chrX 40519500 40519753 -136454387 + L1MC/D LINE L1 2402 2624 -3940 2246 73 3 27 chrX 40519765 40520065 -136454075 - AluSg SINE Alu -17 293 1 2126 96 44 10 chrX 40520524 40520817 -136453323 + AluSg1 SINE Alu 1 303 -6 790 275 104 78 chrX 40521125 40521416 -136452724 + L1MC/D LINE L1 3333 3615 -2949 1720 168 9 35 chrX 40521416 40521731 -136452409 + AluSx SINE Alu 1 307 -5 790 275 104 78 chrX 40521731 40522274 -136451866 + L1MC/D LINE L1 3615 4200 -2364 2480 150 41 7 chrX 40522274 40522687 -136451453 + MSTA LTR MaLR 1 427 -1 790 275 104 78 chrX 40522687 40522865 -136451275 + L1MC/D LINE L1 4200 4372 -2192 1258 244 96 15 chrX 40523178 40523575 -136450565 - MLT1J1 LTR MaLR -12 434 6 1068 303 35 26 chrX 40523590 40524052 -136450088 + L1MC/D LINE L1 5760 6225 -2001 468 280 97 19 chrX 40524081 40524288 -136449852 + MIR SINE MIR 31 253 -9 2412 87 10 0 chrX 40524326 40524636 -136449504 - AluSp SINE Alu 0 313 1 203 152 0 0 chrX 40524922 40524955 -136449185 + A-rich Low_complexity Low_complexity 3 35 0 510 296 7 0 chrX 40525082 40525224 -136448916 - MER45C DNA AcHobo -108 845 703 1148 258 69 17 chrX 40525228 40525588 -136448552 - MER45C DNA AcHobo -574 379 1 414 257 115 20 chrX 40525588 40525736 -136448404 + MIR SINE MIR 67 228 -34 302 136 0 0 chrX 40525769 40525813 -136448327 + MER4B LTR ERV1 1 44 -566 1461 291 58 60 chrX 40525821 40526754 -136447386 + L1M4 LINE L1 183 1113 -5429 614 327 68 56 chrX 40526777 40527545 -136446595 - L2 LINE L2 -1309 2005 1229 373 228 56 99 chrX 40528443 40528605 -136445535 - MIR SINE MIR -78 184 30 183 276 124 38 chrX 40528790 40528895 -136445245 - MIR SINE MIR -36 226 113 3730 218 85 43 chrX 40529088 40530319 -136443821 - L1MB8 LINE L1 -11 6167 4889 2485 166 14 47 chrX 40530319 40530832 -136443308 - L1MA8 LINE L1 0 6291 5796 236 352 50 11 chrX 40530884 40531063 -136443077 - L1MEc LINE L1 -6166 230 45 276 191 0 0 chrX 40531931 40531986 -136442154 - MIR SINE MIR -65 143 94 209 385 28 7 chrX 40532892 40533035 -136441105 + MIR SINE MIR 67 212 -50 1719 144 14 17 chrX 40533105 40533397 -136440743 + AluJb SINE Alu 17 307 -5 202 271 0 0 chrX 40533779 40533827 -136440313 + L2 LINE L2 3224 3271 -1 1368 276 116 87 chrX 40534252 40534828 -136439312 + MLT1G LTR MaLR 1 588 -2 319 303 49 33 chrX 40535119 40535241 -136438899 - MIR SINE MIR -132 130 7 309 357 42 0 chrX 40537442 40537585 -136436555 - L1MDb LINE L1 -3713 2502 2354 2705 274 60 31 chrX 40537627 40538776 -136435364 - L1MDb LINE L1 -3897 2318 1087 1918 116 74 0 chrX 40538776 40539061 -136435079 - AluSg SINE Alu -4 306 1 2705 274 60 31 chrX 40539061 40539647 -136434493 - L1MDb LINE L1 -5128 1087 519 1064 171 5 42 chrX 40539650 40539867 -136434273 - L1MC3 LINE L1 -172 7613 7405 324 70 0 0 chrX 40539867 40539910 -136434230 + (T)n Simple_repeat Simple_repeat 1 43 0 850 155 7 7 chrX 40539925 40539984 -136434156 - AluJb SINE Alu -130 182 124 495 0 0 0 chrX 40539984 40540039 -136434101 + (TG)n Simple_repeat Simple_repeat 2 56 0 850 155 7 7 chrX 40540039 40540121 -136434019 - AluJb SINE Alu -187 125 41 3049 240 12 31 chrX 40540121 40540954 -136433186 - L1MC3 LINE L1 -369 7416 6600 1377 138 45 16 chrX 40541140 40541386 -136432754 - L1MA3 LINE L1 -160 6145 5893 1846 183 64 21 chrX 40542957 40543346 -136430794 + LTR52 LTR ERVL 3 408 -13 502 263 93 29 chrX 40543437 40543749 -136430391 - L1M4 LINE L1 -840 5306 4975 913 208 21 16 chrX 40543754 40543951 -136430189 - L1M4 LINE L1 -2452 3694 3493 2357 161 3 5 chrX 40543951 40544318 -136429822 - MER47A DNA MER2_type 0 366 1 913 208 21 16 chrX 40544318 40544380 -136429760 - L1M4 LINE L1 -2653 3493 3433 268 254 15 0 chrX 40544558 40544625 -136429515 - L1MDb LINE L1 -6054 342 275 2763 265 118 21 chrX 40544670 40545386 -136428754 - L1MEc LINE L1 -5156 1240 379 2299 70 0 17 chrX 40545386 40545685 -136428455 - AluY SINE Alu -16 295 2 2763 265 118 21 chrX 40545685 40546065 -136428075 - L1MEc LINE L1 -6017 379 37 235 291 33 103 chrX 40546091 40546304 -136427836 - L1M4 LINE L1 -1896 4250 4053 711 266 79 0 chrX 40546442 40546645 -136427495 - MIR SINE MIR -21 241 23 21 0 0 0 chrX 40547863 40547884 -136426256 + AT_rich Low_complexity Low_complexity 1 21 0 2283 183 60 20 chrX 40548716 40549219 -136424921 + Charlie1b DNA MER1_type 1 523 0 8205 28 0 0 chrX 40549249 40550792 -136423348 - L1PA3 LINE L1 -3 6152 4610 1699 166 0 30 chrX 40551511 40551807 -136422333 - AluJb SINE Alu -25 287 1 2303 210 28 28 chrX 40552021 40552526 -136421614 + MLT1D LTR MaLR 1 505 0 965 144 17 204 chrX 40552526 40552928 -136421212 + MLT1D-int LTR MaLR 1 327 -1044 396 164 0 0 chrX 40552997 40553052 -136421088 + MLT1D LTR MaLR 1 55 -450 1406 174 21 90 chrX 40553052 40553386 -136420754 + MLT1D-int LTR MaLR 333 643 -728 1955 210 30 155 chrX 40553445 40553764 -136420376 + MLT1D-int LTR MaLR 632 989 -382 2153 101 0 58 chrX 40553764 40554092 -136420048 + AluSc SINE Alu 1 309 0 1955 210 30 155 chrX 40554092 40554584 -136419556 + MLT1D-int LTR MaLR 989 1337 -34 2016 138 0 0 chrX 40554584 40554888 -136419252 - AluJb SINE Alu 0 304 1 1955 210 30 155 chrX 40554888 40554920 -136419220 + MLT1D-int LTR MaLR 1337 1371 0 2460 175 29 44 chrX 40554925 40555339 -136418801 + MLT1D LTR MaLR 6 501 -94 2773 105 63 19 chrX 40555339 40555749 -136418391 - MSTA LTR MaLR 0 428 1 2460 175 29 44 chrX 40555749 40555842 -136418298 + MLT1D LTR MaLR 501 594 -1 1699 112 59 40 chrX 40556251 40556587 -136417553 - MER61C LTR ERV1 0 434 1 610 265 131 30 chrX 40556641 40557160 -136416980 - L1ME LINE L1 -417 5733 5156 611 141 0 0 chrX 40557160 40557245 -136416895 - MER77 LTR ERV1 -14 591 507 1111 240 52 93 chrX 40557246 40557634 -136416506 - MER77 LTR ERV1 -233 372 1 207 167 0 0 chrX 40557687 40557729 -136416411 + T-rich Low_complexity Low_complexity 1 42 0 513 276 94 65 chrX 40557752 40558168 -136415972 - L1ME LINE L1 -1031 5098 4671 252 308 91 18 chrX 40558295 40558571 -136415569 - L1ME LINE L1 -1621 4508 4213 1992 112 47 4 chrX 40558755 40559033 -136415107 - AluSx SINE Alu -22 290 1 2333 106 0 3 chrX 40559429 40559741 -136414399 + AluSq SINE Alu 1 311 -2 313 263 88 51 chrX 40559888 40560025 -136414115 + MIR SINE MIR 13 154 -108 2193 209 82 29 chrX 40560198 40560719 -136413421 - MER44D DNA MER2_type -1 604 1 2339 161 88 31 chrX 40560752 40561230 -136412910 - MLT1D LTR MaLR 0 505 1 314 286 58 52 chrX 40561823 40562169 -136411971 - L1ME LINE L1 -5030 1089 742 403 286 9 9 chrX 40562692 40562797 -136411343 - MIR SINE MIR -110 152 48 499 295 78 41 chrX 40563314 40563558 -136410582 + MIR SINE MIR 10 262 0 948 268 113 36 chrX 40564057 40564205 -136409935 - L1ME4a LINE L1 -11 6110 5975 1977 103 25 150 chrX 40564205 40564439 -136409701 - MLT1B LTR MaLR 0 390 237 1579 91 0 0 chrX 40564439 40564638 -136409502 - AluSq SINE Alu -114 199 1 1977 103 25 150 chrX 40564638 40564849 -136409291 - MLT1B LTR MaLR -153 237 1 948 268 113 36 chrX 40564849 40565377 -136408763 - L1ME4a LINE L1 -146 5975 5320 492 304 75 19 chrX 40566884 40567098 -136407042 - MIR SINE MIR 0 262 37 483 295 86 30 chrX 40567852 40568062 -136406078 + MIR SINE MIR 40 259 -3 802 292 0 0 chrX 40568183 40568354 -136405786 - MER91B DNA MER1_type -2 188 18 1411 172 0 49 chrX 40568361 40568669 -136405471 + MLT1D LTR MaLR 3 295 -210 566 141 0 0 chrX 40568669 40568771 -136405369 + AluSg/x SINE Alu 203 304 0 2273 107 3 0 chrX 40568796 40569095 -136405045 + AluSx SINE Alu 1 300 -12 340 332 149 44 chrX 40569098 40569667 -136404473 - L2 LINE L2 -634 2680 2052 23 78 0 0 chrX 40570020 40570071 -136404069 + AT_rich Low_complexity Low_complexity 1 51 0 497 278 126 27 chrX 40570234 40570511 -136403629 - HAL1 LINE L1 -194 2313 1980 1768 117 16 8 chrX 40570511 40570759 -136403381 - AluSx SINE Alu -27 285 36 497 278 126 27 chrX 40570759 40570895 -136403245 - HAL1 LINE L1 -527 1980 1859 381 258 96 22 chrX 40570889 40571067 -136403073 - HAL1 LINE L1 -1042 1465 1275 * 456 260 77 0 chrX 40571067 40571171 -136402969 + L2 LINE L2 3198 3309 -4 6189 159 54 25 chrX 40571633 40572139 -136402001 - L1MA9 LINE L1 -2 6310 5820 219 69 0 0 chrX 40572139 40572168 -136401972 + (TG)n Simple_repeat Simple_repeat 2 30 0 6189 159 54 25 chrX 40572168 40573002 -136401138 - L1MA9 LINE L1 -492 5820 5011 234 0 0 0 chrX 40573002 40573028 -136401112 + (TG)n Simple_repeat Simple_repeat 2 27 0 6189 159 54 25 chrX 40573028 40574000 -136400140 - L1MA9 LINE L1 -1301 5011 3912 569 192 8 32 chrX 40574071 40574196 -136399944 + L2 LINE L2 3192 3313 0 308 337 23 58 chrX 40574263 40574524 -136399616 - HAL1 LINE L1 -1187 1320 1069 2273 124 132 5 chrX 40574542 40574922 -136399218 + MSTA LTR MaLR 1 428 0 3242 71 25 7 chrX 40576093 40576529 -136397611 - MLT2A1 LTR ERVL 0 444 1 243 61 0 0 chrX 40577077 40577110 -136397030 + (TG)n Simple_repeat Simple_repeat 1 33 0 394 187 33 33 chrX 40578224 40578315 -136395825 - THE1C LTR MaLR -2 426 336 857 132 5 100 chrX 40578358 40578400 -136395740 - AluJo/FRAM SINE Alu -6 306 262 1943 142 3 7 chrX 40578400 40578702 -136395438 + AluSx SINE Alu 2 302 -10 857 132 5 100 chrX 40578702 40578849 -136395291 - AluJo/FRAM SINE Alu -50 262 135 575 229 179 21 chrX 40578876 40579156 -136394984 + MER5C DNA MER1_type 1 324 0 489 140 54 21 chrX 40579529 40579622 -136394518 - U6 snRNA snRNA -11 96 1 21 0 0 0 chrX 40579990 40580011 -136394129 + AT_rich Low_complexity Low_complexity 1 21 0 7446 35 0 3 chrX 40580087 40581161 -136392979 - L1PA5 LINE L1 0 6154 5082 754 219 127 17 chrX 40581558 40581849 -136392291 + MER41B LTR ERV1 97 384 -94 27 0 0 0 chrX 40581858 40581885 -136392255 + AT_rich Low_complexity Low_complexity 1 27 0 1603 135 45 22 chrX 40581885 40582196 -136391944 - THE1C LTR MaLR -57 318 1 198 0 0 0 chrX 40582326 40582348 -136391792 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 234 0 0 0 chrX 40582347 40582373 -136391767 + (GA)n Simple_repeat Simple_repeat 1 26 0 294 287 24 84 chrX 40582508 40582675 -136391465 - MLT1J LTR MaLR -131 380 224 351 304 89 68 chrX 40582944 40583280 -136390860 - L2 LINE L2 -37 3276 2934 3060 241 54 42 chrX 40583313 40584394 -136389746 - L1MEc LINE L1 -5236 1160 67 261 0 0 0 chrX 40585573 40585602 -136388538 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4321 167 39 40 chrX 40686258 40687236 -136286904 - L1P LINE L1 -4880 1266 290 7127 46 0 2 chrX 40687368 40688350 -136285790 - L1P LINE L1 -3767 2379 1400 1918 149 55 3 chrX 40688882 40689244 -136284896 + MLT1B LTR MaLR 8 388 -2 1039 47 7 0 chrX 40689392 40689542 -136284598 + L1P2 LINE L1 5311 5461 -694 1272 126 10 5 chrX 40689941 40690140 -136284000 + AluSx SINE Alu 1 200 -112 22 35 0 0 chrX 40690140 40690169 -136283971 + AT_rich Low_complexity Low_complexity 1 29 0 231 190 7 102 chrX 40690332 40690469 -136283671 + C-rich Low_complexity Low_complexity 2 125 0 217 189 0 38 chrX 40690611 40690664 -136283476 + C-rich Low_complexity Low_complexity 3 53 0 429 298 33 56 chrX 40691266 40691468 -136282672 - L1ME3 LINE L1 0 6166 5963 1995 246 33 35 chrX 40691944 40692551 -136281589 - L1MEc LINE L1 -5749 647 42 297 242 30 45 chrX 40692555 40692687 -136281453 + LTR16B LTR ERVL 200 329 -135 214 143 0 36 chrX 40692888 40692944 -136281196 + (CCCCCT)n Simple_repeat Simple_repeat 2 55 0 251 324 0 28 chrX 40692945 40693053 -136281087 + CT-rich Low_complexity Low_complexity 2 106 0 * 344 320 0 33 chrX 40692992 40693197 -136280943 + C-rich Low_complexity Low_complexity 1 198 0 431 261 72 20 chrX 40693778 40694027 -136280113 + L1M4 LINE L1 4612 4873 -1273 1095 101 16 79 chrX 40696338 40696473 -136277667 + AluSx SINE Alu 2 123 -189 1893 136 3 23 chrX 40696473 40696781 -136277359 + AluSx SINE Alu 1 302 -10 1095 101 16 79 chrX 40696781 40696834 -136277306 + AluSx SINE Alu 123 178 -134 203 208 19 19 chrX 40696893 40696946 -136277194 + CT-rich Low_complexity Low_complexity 1 53 0 185 226 12 0 chrX 40696998 40697082 -136277058 + C-rich Low_complexity Low_complexity 3 87 0 1331 279 51 42 chrX 40697184 40697579 -136276561 + L1MEc LINE L1 1000 1390 -5006 2417 70 3 10 chrX 40697579 40697893 -136276247 - AluSp SINE Alu 0 313 2 1331 279 51 42 chrX 40697893 40698308 -136275832 + L1MEc LINE L1 1390 1817 -4579 225 219 0 0 chrX 40699966 40700039 -136274101 + G-rich Low_complexity Low_complexity 1 73 0 1655 21 0 0 chrX 40701293 40701479 -136272661 + L1PA3 LINE L1 5970 6155 0 596 193 67 1 chrX 40701481 40701631 -136272509 - L1MC3 LINE L1 -144 7678 7493 670 276 4 70 chrX 40701639 40701882 -136272258 + L2 LINE L2 3086 3312 -1 194 321 0 0 chrX 40702031 40702084 -136272056 + L2 LINE L2 2417 2469 -845 2215 85 20 0 chrX 40702962 40703268 -136270872 + AluSx SINE Alu 1 312 0 426 163 20 0 chrX 40703579 40703677 -136270463 + MER113 DNA MER1_type? 110 209 -312 210 379 98 21 chrX 40704156 40704391 -136269749 + L2 LINE L2 2934 3186 -86 1798 134 10 17 chrX 40704724 40705015 -136269125 - AluSx SINE Alu -9 303 15 1538 209 0 13 chrX 40705025 40705326 -136268814 - AluJb SINE Alu -15 297 1 253 175 18 18 chrX 40705414 40705471 -136268669 + MLT1I LTR MaLR 353 409 0 1798 133 207 13 chrX 40706019 40706396 -136267744 - LTR7 LTR ERV1 0 450 1 1870 132 43 0 chrX 40706410 40706736 -136267404 + LTR10A LTR ERV1 208 547 -62 489 134 24 0 chrX 40706755 40706837 -136267303 + Alu SINE Alu 228 311 0 1349 130 5 10 chrX 40706841 40707049 -136267091 + AluSx SINE Alu 1 207 -105 639 87 10 19 chrX 40707051 40707154 -136266986 - LTR7 LTR ERV1 0 450 349 1254 110 42 30 chrX 40707259 40707496 -136266644 + AluY SINE Alu 55 294 -17 1747 122 3 91 chrX 40707871 40708191 -136265949 - AluSx SINE Alu -20 292 1 309 131 0 0 chrX 40708193 40708254 -136265886 - AluSp/q SINE Alu 0 303 243 5950 79 2 2 chrX 40708358 40709277 -136264863 + L1P LINE L1 2334 3252 -2894 204 172 0 69 chrX 40709331 40709389 -136264751 + C-rich Low_complexity Low_complexity 3 56 0 184 283 19 0 chrX 40709963 40710016 -136264124 - MIR SINE MIR -98 164 111 327 241 18 9 chrX 40710650 40710762 -136263378 + G-rich Low_complexity Low_complexity 2 114 0 377 270 0 36 chrX 40710889 40711000 -136263140 + L2 LINE L2 2223 2329 -985 553 289 3 111 chrX 40711300 40711615 -136262525 + L2 LINE L2 2217 2497 -817 559 257 35 51 chrX 40711615 40711872 -136262268 - L1MEc LINE L1 -5984 412 160 340 323 0 0 chrX 40712009 40712139 -136262001 + C-rich Low_complexity Low_complexity 1 130 0 549 164 0 39 chrX 40713652 40713756 -136260384 - AluSc SINE Alu -72 237 138 1759 123 23 52 chrX 40713756 40714066 -136260074 - AluSq SINE Alu -12 301 1 1910 127 24 3 chrX 40715657 40715949 -136258191 + AluSx SINE Alu 1 298 -14 560 239 0 0 chrX 40715955 40716072 -136258068 + FLAM_C SINE Alu 3 119 -24 257 303 73 28 chrX 40716512 40716621 -136257519 - L2 LINE L2 -204 3068 2955 469 374 5 0 chrX 40716641 40716844 -136257296 + LTR16B LTR ERVL 9 212 -252 1649 214 77 8 chrX 40716845 40717365 -136256775 - L1MEc LINE L1 -4189 2207 1652 2040 103 7 40 chrX 40717465 40717765 -136256375 - AluSx SINE Alu -22 290 1 299 275 25 17 chrX 40718680 40718800 -136255340 - MER66-int LTR ERV1 -6339 337 217 2176 111 3 16 chrX 40718894 40719201 -136254939 - AluSc SINE Alu -6 303 1 976 124 0 28 chrX 40719202 40719347 -136254793 - FLAM_C SINE Alu -2 141 1 1056 184 31 65 chrX 40719347 40719768 -136254372 + MER66-int LTR ERV1 653 1114 -5562 1496 118 0 0 chrX 40719768 40719963 -136254177 - AluSc SINE Alu -17 292 98 1045 160 0 11 chrX 40720101 40720282 -136253858 + AluSg/x SINE Alu 114 292 -20 2273 86 7 0 chrX 40720289 40720581 -136253559 + AluY SINE Alu 1 294 -17 1651 144 28 21 chrX 40721842 40722133 -136252007 - AluSx SINE Alu -19 293 1 314 211 53 0 chrX 40722136 40722212 -136251928 - AluJ/FRAM SINE Alu 0 302 223 1391 174 20 8 chrX 40722454 40722707 -136251433 + 7SLRNA srpRNA srpRNA 1 256 -64 245 287 57 0 chrX 40724437 40724559 -136249581 + MER74B LTR ERVL 211 339 -283 2287 94 7 7 chrX 40724567 40724874 -136249266 - AluY SINE Alu -4 307 1 664 193 0 14 chrX 40724889 40725034 -136249106 - AluSq SINE Alu -31 282 140 350 333 0 0 chrX 40725042 40725204 -136248936 + C-rich Low_complexity Low_complexity 1 162 0 4211 126 7 5 chrX 40725304 40726428 -136247712 - L1MA2 LINE L1 -452 5852 4730 253 313 7 35 chrX 40726679 40726823 -136247317 + GA-rich Low_complexity Low_complexity 1 140 0 6709 52 4 2 chrX 40727333 40728165 -136245975 + L1PA2 LINE L1 5322 6154 -1 1740 185 0 0 chrX 40728165 40728484 -136245656 + L1M4 LINE L1 3979 4297 -1849 257 327 115 0 chrX 40729122 40729287 -136244853 + MIR SINE MIR 50 233 -29 256 26 77 0 chrX 40729320 40729359 -136244781 - L1MA6 LINE L1 -6 6294 6253 822 157 324 0 chrX 40730194 40730404 -136243736 + AluJb SINE Alu 18 295 -17 478 314 78 29 chrX 40730410 40730652 -136243488 + L1M4 LINE L1 4457 4710 -1436 758 224 0 8 chrX 40730655 40730789 -136243351 + FLAM_A SINE Alu 1 133 0 710 229 65 36 chrX 40731076 40731382 -136242758 + L1MC4 LINE L1 7728 8042 0 217 170 19 19 chrX 40731540 40731593 -136242547 + G-rich Low_complexity Low_complexity 6 58 0 303 130 39 13 chrX 40732683 40732760 -136241380 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 3243 210 42 16 chrX 40733068 40734035 -136240105 - L1ME1 LINE L1 -108 6058 5076 972 183 6 6 chrX 40734037 40734217 -136239923 - MLT1C LTR MaLR -2 465 286 420 20 0 0 chrX 40735389 40735438 -136238702 + (TAG)n Simple_repeat Simple_repeat 2 50 0 2501 97 24 11 chrX 40736380 40736760 -136237380 - LTR1 LTR ERV1 0 785 401 3117 81 27 7 chrX 40736761 40737206 -136236934 + MER11B LTR ERVK 1 454 -782 274 249 85 24 chrX 40737344 40737559 -136236581 + (TGAG)n Simple_repeat Simple_repeat 1 228 0 2217 91 7 3 chrX 40737640 40737937 -136236203 - AluY SINE Alu -10 301 4 1166 195 13 89 chrX 40737941 40738244 -136235896 - AluJb SINE Alu -12 300 21 352 280 21 0 chrX 40739523 40739616 -136234524 - L2 LINE L2 -1 3312 3218 874 191 72 29 chrX 40739711 40739988 -136234152 - L1MD3 LINE L1 0 7995 7707 709 297 19 19 chrX 40739986 40740242 -136233898 - L1MC4a LINE L1 -1048 6760 6505 * 1648 153 40 58 chrX 40742286 40742633 -136231507 + MSTA LTR MaLR 2 342 -86 3939 95 4 24 chrX 40742835 40743315 -136230825 + MER1A DNA MER1_type 4 473 -2227 2288 98 3 0 chrX 40743315 40743610 -136230530 + AluSg SINE Alu 1 296 -14 3939 95 4 24 chrX 40743610 40743664 -136230476 + MER1A DNA MER1_type 473 527 0 273 236 132 42 chrX 40743697 40743841 -136230299 + L1MCb LINE L1 214 370 -5675 10640 62 6 1 chrX 40747221 40748652 -136225488 + L1P LINE L1 803 2239 -3907 363 333 11 11 chrX 40749016 40749190 -136224950 + (TG)n Simple_repeat Simple_repeat 2 175 0 410 328 11 11 chrX 40749217 40749394 -136224746 + (TG)n Simple_repeat Simple_repeat 1 177 0 319 259 0 32 chrX 40749449 40749634 -136224506 + (TG)n Simple_repeat Simple_repeat 1 179 0 194 284 0 9 chrX 40749694 40749810 -136224330 + (TG)n Simple_repeat Simple_repeat 1 115 0 26 50 0 0 chrX 40750029 40750069 -136224071 + GC_rich Low_complexity Low_complexity 1 40 0 3031 161 6 7 chrX 40750227 40750768 -136223372 - L1P LINE L1 -5606 540 1 286 271 45 68 chrX 40751330 40751463 -136222677 + L2 LINE L2 3134 3263 -9 195 42 0 0 chrX 40751466 40751490 -136222650 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 278 215 168 19 chrX 40751713 40751820 -136222320 + MIR SINE MIR 84 206 -56 23 33 0 0 chrX 40751960 40751990 -136222150 + AT_rich Low_complexity Low_complexity 1 30 0 292 283 13 150 chrX 40752347 40752580 -136221560 - MIR SINE MIR -13 249 49 221 271 160 21 chrX 40752586 40752730 -136221410 + MIR SINE MIR 94 257 -5 240 266 18 9 chrX 40752914 40753023 -136221117 + L1ME3 LINE L1 5962 6071 -91 184 289 89 52 chrX 40753118 40753253 -136220887 + MIR SINE MIR 112 251 -11 766 273 28 52 chrX 40753447 40754019 -136220121 + L1ME LINE L1 5010 5569 -593 4947 41 0 0 chrX 40754051 40754688 -136219452 + L1P LINE L1 4767 5403 -743 3413 77 25 0 chrX 40755230 40755672 -136218468 - MLT2A2 LTR ERVL 0 453 1 1333 135 0 5 chrX 40756197 40756390 -136217750 + AluSg/x SINE Alu 100 291 -21 181 200 147 21 chrX 40756829 40756924 -136217216 + L2 LINE L2 3133 3239 -33 186 267 0 0 chrX 40758001 40758091 -136216049 + C-rich Low_complexity Low_complexity 1 90 0 469 262 33 31 chrX 40758421 40758827 -136215313 + (TGAG)n Simple_repeat Simple_repeat 1 407 0 204 278 28 56 chrX 40758842 40759022 -136215118 + (TGAG)n Simple_repeat Simple_repeat 4 178 0 1805 213 47 9 chrX 40761582 40762033 -136212107 - MER110A LTR ERV1 0 468 1 279 0 0 0 chrX 40762141 40762172 -136211968 + (TG)n Simple_repeat Simple_repeat 2 32 0 1475 93 0 18 chrX 40762183 40762409 -136211731 - L1MA5 LINE L1 -11 6289 6068 1349 107 10 10 chrX 40763731 40763927 -136210213 - AluSq SINE Alu -117 196 1 7403 65 17 2 chrX 40764952 40766427 -136207713 - L1P LINE L1 -2545 3601 1927 399 259 59 7 chrX 40767017 40767152 -136206988 - L1ME4a LINE L1 -11 6110 5969 313 282 153 24 chrX 40767524 40767694 -136206446 - L1ME4a LINE L1 -135 5986 5795 311 281 106 19 chrX 40767820 40767980 -136206160 + MIR SINE MIR 88 261 -1 538 67 11 11 chrX 40769240 40769329 -136204811 + (CA)n Simple_repeat Simple_repeat 2 90 0 9584 54 1 4 chrX 40769745 40770976 -136203164 - L1P LINE L1 -4019 2127 901 3316 258 44 10 chrX 40771258 40772266 -136201874 + L1M4 LINE L1 3425 4466 -1680 668 172 0 47 chrX 40772375 40772503 -136201637 - AluSq/x SINE Alu -189 123 2 2368 57 0 3 chrX 40772517 40772813 -136201327 - AluY SINE Alu -16 295 1 1874 109 4 0 chrX 40772864 40773131 -136201009 - AluY SINE Alu -16 295 28 1767 125 50 0 chrX 40773352 40773632 -136200508 - AluSg SINE Alu -16 294 1 885 183 24 33 chrX 40773637 40773850 -136200290 - AluJo SINE Alu -16 296 86 348 344 32 85 chrX 40774048 40774423 -136199717 - L2 LINE L2 -52 3220 2866 282 189 0 0 chrX 40774596 40774649 -136199491 - L1MC4a LINE L1 -228 7580 7528 * 701 106 0 29 chrX 40774630 40774734 -136199406 - L1MC3 LINE L1 -989 6796 6696 6523 73 13 4 chrX 40776026 40777303 -136196837 - L1PA7 LINE L1 -15 6139 4870 195 42 0 0 chrX 40777592 40777616 -136196524 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 457 16 32 0 chrX 40777845 40777877 -136196263 + (TAGA)n Simple_repeat Simple_repeat 1 97 0 457 16 32 0 chrX 40777877 40777939 -136196201 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 874 142 19 0 chrX 40779234 40779389 -136194751 - AluSq SINE Alu -29 284 127 1923 123 10 0 chrX 40779458 40779760 -136194380 - AluSc SINE Alu -4 305 1 463 325 50 28 chrX 40780799 40781257 -136192883 + L1ME3A LINE L1 3176 3643 -2503 503 304 52 52 chrX 40781259 40781683 -136192457 + L1ME3A LINE L1 3663 4086 -2060 828 274 56 81 chrX 40781764 40782268 -136191872 + L1ME3A LINE L1 5657 6147 -23 516 16 0 0 chrX 40782704 40782765 -136191375 + (CA)n Simple_repeat Simple_repeat 1 61 0 891 134 0 0 chrX 40782887 40783036 -136191104 - L1MA9 LINE L1 -5 6307 6159 969 183 20 10 chrX 40783044 40783241 -136190899 - L1PA16 LINE L1 -23 6143 5945 598 209 22 30 chrX 40783243 40783377 -136190763 - FLAM_A SINE Alu 0 133 1 2737 158 25 16 chrX 40783378 40783758 -136190382 - L1MA9 LINE L1 -140 6172 5784 306 73 0 0 chrX 40783758 40783799 -136190341 + (TG)n Simple_repeat Simple_repeat 2 42 0 2737 158 25 16 chrX 40783799 40783930 -136190210 - L1MA9 LINE L1 -528 5784 5656 6728 69 11 17 chrX 40784031 40784906 -136189234 - Harlequin LTR ERV1 -2675 4221 3352 3907 43 2 6 chrX 40784905 40785435 -136188705 - Harlequin LTR ERV1 -4322 2574 2047 * 778 35 53 0 chrX 40785443 40785556 -136188584 + AluY SINE Alu 2 120 -191 1214 148 157 0 chrX 40785873 40786109 -136188031 - AluJb SINE Alu -19 293 21 5995 50 3 0 chrX 40786227 40786949 -136187191 + LTR5 LTR ERVK 1 724 -245 504 103 51 0 chrX 40787051 40787129 -136187011 - AluS SINE Alu -230 83 2 2006 104 3 10 chrX 40787136 40787309 -136186831 - AluSq SINE Alu -6 307 135 2388 44 7 3 chrX 40787309 40787605 -136186535 - AluY SINE Alu -14 297 1 2006 104 3 10 chrX 40787605 40787720 -136186420 - AluSq SINE Alu -178 135 21 832 221 6 0 chrX 40787857 40788015 -136186125 - AluJb SINE Alu -16 296 138 700 188 42 55 chrX 40788020 40788138 -136186002 + MER20 DNA MER1_type 57 174 -45 1384 186 24 20 chrX 40788138 40788433 -136185707 + AluJo SINE Alu 1 296 -16 700 188 42 55 chrX 40788433 40788479 -136185661 + MER20 DNA MER1_type 174 219 0 306 124 101 0 chrX 40788745 40788834 -136185306 + L1M LINE L1 5300 5397 -903 4840 191 35 44 chrX 40788843 40790383 -136183757 - MER52A LTR ERV1 0 1755 532 619 266 0 0 chrX 40790372 40790500 -136183640 - MER52A LTR ERV1 -1627 128 1 * 2369 131 16 0 chrX 40790501 40790875 -136183265 + L1M1 LINE L1 5406 5785 -515 3450 158 78 240 chrX 40791499 40792647 -136181493 + MER52A LTR ERV1 59 1105 -192 1782 139 17 0 chrX 40793789 40794076 -136180064 + AluSc SINE Alu 1 292 -17 290 196 18 0 chrX 40794293 40794349 -136179791 - MLT1I LTR MaLR 0 409 353 687 265 0 0 chrX 40794447 40794613 -136179527 + AluJb SINE Alu 9 174 -138 2346 183 8 55 chrX 40795015 40795545 -136178595 + L1MA10 LINE L1 5819 6323 -11 1040 248 100 22 chrX 40795566 40796054 -136178086 + L1M4 LINE L1 2415 2940 -3206 515 294 120 15 chrX 40796069 40796633 -136177507 + L1M4 LINE L1 3035 3660 -2486 249 290 46 15 chrX 40796634 40796765 -136177375 + L1M4 LINE L1 3816 3950 -2196 1677 216 59 11 chrX 40796829 40797023 -136177117 - L1MD3 LINE L1 -2 7993 7810 4435 136 19 6 chrX 40797023 40797721 -136176419 - MER39 LTR ERV1 0 707 1 1677 216 59 11 chrX 40797721 40797970 -136176170 - L1MD3 LINE L1 -185 7810 7529 369 223 32 21 chrX 40797975 40798069 -136176071 + MLT1F1 LTR MaLR 40 134 -433 412 121 0 0 chrX 40798069 40798135 -136176005 + L1MD3 LINE L1 7414 7479 -516 813 225 84 16 chrX 40798193 40798384 -136175756 + MER21B LTR ERV1 657 860 -3 1810 261 63 10 chrX 40798398 40798981 -136175159 - L1MEc LINE L1 -3355 2860 2247 2237 143 3 34 chrX 40798982 40799367 -136174773 - L1PB4 LINE L1 -2 6154 5782 466 178 11 0 chrX 40799725 40799815 -136174325 - L1PB4 LINE L1 -959 5187 5097 * 2220 273 52 32 chrX 40799814 40800882 -136173258 - L1MEc LINE L1 -4098 2298 1210 1454 196 84 21 chrX 40800986 40801368 -136172772 - L1PB4 LINE L1 -1800 4346 3941 1765 113 4 0 chrX 40801371 40801628 -136172512 + AluSp SINE Alu 49 306 -7 1690 109 60 25 chrX 40801629 40801914 -136172226 + AluY SINE Alu 1 295 -16 1762 260 71 42 chrX 40802581 40803585 -136170555 - L1ME3A LINE L1 -11 6159 5127 1164 353 50 35 chrX 40803658 40804610 -136169530 + L1MB1 LINE L1 2756 3722 -2424 12312 44 0 1 chrX 40804743 40806235 -136167905 - L1P LINE L1 -1341 4805 3315 205 284 40 47 chrX 40808990 40809138 -136165002 + (CGTG)n Simple_repeat Simple_repeat 4 150 0 2443 221 7 101 chrX 40810703 40811593 -136162547 + L1MB1 LINE L1 3718 4523 -1623 2324 204 45 5 chrX 40811598 40812152 -136161988 + L1MB1 LINE L1 5257 5832 -336 3860 181 43 18 chrX 40812156 40812896 -136161244 + L1M1 LINE L1 16 774 -6791 219 167 42 21 chrX 40814041 40814089 -136160051 - L3 LINE CR1 -917 660 612 1573 156 181 11 chrX 40815759 40815794 -136158346 - MLT2D LTR ERVL 0 414 386 324 0 0 0 chrX 40815794 40815830 -136158310 + (TG)n Simple_repeat Simple_repeat 2 37 0 1573 156 181 11 chrX 40815830 40816147 -136157993 - MLT2D LTR ERVL -28 386 2 3105 216 43 1 chrX 40817040 40818257 -136155883 + L1MCa LINE L1 1864 3134 -3292 260 204 0 0 chrX 40818371 40818425 -136155715 + LTR10A LTR ERV1 556 609 0 428 71 57 43 chrX 40818425 40818495 -136155645 + Alu SINE Alu 222 292 -19 951 70 0 8 chrX 40818497 40818625 -136155515 + FLAM_C SINE Alu 1 127 -16 1578 179 26 23 chrX 40818717 40818885 -136155255 - AluSx SINE Alu -3 309 138 2216 112 3 0 chrX 40818885 40819181 -136154959 - AluSq SINE Alu -14 299 3 1578 179 26 23 chrX 40819181 40819320 -136154820 - AluSx SINE Alu -174 138 1 1474 95 43 9 chrX 40819330 40819541 -136154599 - AluSq SINE Alu -15 298 81 336 267 0 11 chrX 40820260 40820350 -136153790 - MER117 DNA MER1_type -108 89 1 183 311 19 29 chrX 40820583 40820686 -136153454 - L2 LINE L2 -2071 1243 1142 663 228 68 6 chrX 40821390 40821552 -136152588 - MER45A DNA AcHobo -3 175 4 441 0 0 0 chrX 40821685 40821734 -136152406 + (CA)n Simple_repeat Simple_repeat 2 50 0 929 88 0 0 chrX 40821857 40821982 -136152158 - L1P LINE L1 -6021 125 1 * 3011 182 4 13 chrX 40821980 40822218 -136151922 - L1M2 LINE L1 -703 5609 5370 2147 122 0 3 chrX 40822218 40822514 -136151626 - AluY SINE Alu -16 295 1 3011 182 4 13 chrX 40822514 40823175 -136150965 - L1M2 LINE L1 -942 5370 4713 3205 155 34 12 chrX 40823179 40823855 -136150285 - L1M2 LINE L1 -1544 4602 3912 2261 153 22 136 chrX 40823855 40824489 -136149651 + L1MA8 LINE L1 5449 6010 -281 1131 197 72 12 chrX 40824662 40824982 -136149158 - L1M2 LINE L1 -2298 3848 3510 308 169 31 15 chrX 40824983 40825048 -136149092 - L1MD3 LINE L1 -10 7985 7920 254 203 47 31 chrX 40825110 40825174 -136148966 - L1MC3 LINE L1 -225 7560 7496 1591 172 26 23 chrX 40827081 40827244 -136146896 - AluSx SINE Alu -8 304 138 2219 104 3 3 chrX 40827244 40827541 -136146599 - AluSq SINE Alu -14 299 3 1591 172 26 23 chrX 40827541 40827680 -136146460 - AluSx SINE Alu -174 138 1 1967 103 28 11 chrX 40827689 40827971 -136146169 - AluSg SINE Alu -10 300 14 1233 157 80 70 chrX 40828058 40828357 -136145783 + AluJo SINE Alu 1 302 -10 20468 39 8 0 chrX 40829235 40831928 -136142212 - L1P LINE L1 -2470 3676 962 5260 154 29 46 chrX 40832951 40834029 -136140111 + Tigger2 DNA MER2_type 2 1060 -1658 775 64 0 0 chrX 40834051 40834160 -136139980 - L1PA4 LINE L1 -930 5216 5108 5944 30 1 0 chrX 40834160 40834927 -136139213 + L1PA4 LINE L1 5217 5984 -171 2177 120 0 3 chrX 40835754 40836053 -136138087 + AluSp SINE Alu 1 298 -15 962 142 0 0 chrX 40836061 40836195 -136137945 + AluSq/x SINE Alu 2 135 -178 1853 159 3 0 chrX 40836195 40836491 -136137649 + AluSx SINE Alu 1 297 -15 1125 129 6 0 chrX 40836864 40837027 -136137113 - AluSc SINE Alu 0 309 146 300 175 35 0 chrX 40837727 40837784 -136136356 - AluSp/q SINE Alu -5 298 240 1453 84 0 0 chrX 40837785 40837964 -136136176 - AluY SINE Alu -132 179 1 702 220 122 98 chrX 40837998 40838093 -136136047 - MER66B LTR ERV1 0 486 395 729 213 6 52 chrX 40838093 40838267 -136135873 - FRAM SINE Alu 0 166 1 702 220 122 98 chrX 40838267 40838282 -136135858 - MER66B LTR ERV1 -91 395 382 2003 112 22 0 chrX 40838282 40838551 -136135589 - AluSx SINE Alu -37 275 1 702 220 122 98 chrX 40838551 40838776 -136135364 - MER66B LTR ERV1 -104 382 142 2177 217 60 18 chrX 40839979 40840373 -136133767 + L1 LINE L1 3828 4257 -1889 2512 83 0 13 chrX 40840373 40840687 -136133453 + AluY SINE Alu 2 311 0 2177 217 60 18 chrX 40840687 40840896 -136133244 + L1 LINE L1 4257 4456 -1690 665 242 55 0 chrX 40840896 40841061 -136133079 + FRAM SINE Alu 1 167 -9 316 235 52 17 chrX 40841085 40841200 -136132940 + L1 LINE L1 4566 4684 -1462 1988 140 0 7 chrX 40841213 40841505 -136132635 - AluSx SINE Alu -15 297 8 6287 54 24 6 chrX 40841505 40842342 -136131798 + LTR13 LTR ERVK 1 852 -155 1209 161 0 5 chrX 40842460 40842521 -136131619 - AluSg SINE Alu -115 195 135 2447 91 0 0 chrX 40842521 40842817 -136131323 - AluSg SINE Alu -13 297 2 1209 161 0 5 chrX 40842817 40842948 -136131192 - AluSg SINE Alu -175 135 4 703 142 55 8 chrX 40843254 40843381 -136130759 + FLAM_C SINE Alu 1 133 0 2095 128 0 3 chrX 40843386 40843668 -136130472 + AluSx SINE Alu 14 294 -18 2248 105 16 3 chrX 40843668 40843972 -136130168 + AluSp SINE Alu 1 309 -4 1590 150 15 0 chrX 40843972 40844232 -136129908 + AluSp SINE Alu 1 264 -49 2128 116 0 23 chrX 40844469 40844779 -136129361 - AluSc SINE Alu -6 303 1 2366 117 0 0 chrX 40844779 40845087 -136129053 - AluSx SINE Alu -4 308 1 2240 105 7 0 chrX 40845414 40845710 -136128430 - AluSx SINE Alu -14 298 1 1298 195 93 6 chrX 40848570 40848969 -136125171 - MER66-int LTR ERV1 -4677 1999 1531 757 227 22 0 chrX 40851450 40851635 -136122505 + L1 LINE L1 2456 2644 -3502 4026 183 39 9 chrX 40851639 40852520 -136121620 + L1 LINE L1 3088 3994 -2152 14242 67 5 4 chrX 40852526 40854457 -136119683 + L1P LINE L1 13 1945 -4201 2253 116 3 0 chrX 40855254 40855556 -136118584 + AluSx SINE Alu 1 303 -9 2132 96 20 10 chrX 40855564 40855856 -136118284 + AluY SINE Alu 1 295 -16 2334 62 20 3 chrX 40856558 40856850 -136117290 - AluY SINE Alu -13 298 2 1461 186 69 9 chrX 40857165 40857499 -136116641 + Harlequin LTR ERV1 1378 1731 -4918 330 216 79 26 chrX 40857486 40857810 -136116330 + Harlequin LTR ERV1 860 1123 -5773 * 864 254 57 25 chrX 40857965 40858541 -136115599 - L1M4 LINE L1 -492 5686 5080 13392 188 10 3 chrX 40858542 40859726 -136114414 + L1PA14 LINE L1 2362 3537 -2624 254 50 25 0 chrX 40859726 40859766 -136114374 + (CAA)n Simple_repeat Simple_repeat 2 42 0 13392 188 10 3 chrX 40859766 40862414 -136111726 + L1PA14 LINE L1 3537 6160 -1 14076 141 13 5 chrX 40862594 40865175 -136108965 + Harlequin LTR ERV1 4281 6895 -1 2925 46 54 5 chrX 40865175 40865546 -136108594 + LTR2B LTR ERV1 1 389 -101 505 326 96 33 chrX 40865648 40866109 -136108031 - L1 LINE L1 -2839 4009 1737 518 266 106 18 chrX 40866235 40866453 -136107687 + MER63 DNA MER1_type 824 1060 0 1624 126 29 48 chrX 40866630 40866939 -136107201 - AluSx SINE Alu -8 304 2 903 76 0 0 chrX 40866940 40867058 -136107082 - AluSg/x SINE Alu -11 299 182 180 0 0 0 chrX 40867535 40867555 -136106585 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1555 112 43 0 chrX 40867569 40867801 -136106339 + AluSx SINE Alu 1 242 -70 926 94 16 0 chrX 40867879 40868007 -136106133 + AluJo SINE Alu 85 214 -98 268 71 71 0 chrX 40868009 40868051 -136106089 + FLAM SINE Alu 82 126 -7 2134 67 3 11 chrX 40868057 40868367 -136105773 + AluY SINE Alu 1 308 0 7911 58 2 0 chrX 40869712 40870727 -136103413 - L1P LINE L1 -2422 3724 2708 3990 151 35 0 chrX 40870828 40871462 -136102678 - Tigger2 DNA MER2_type -929 1789 1134 1809 151 10 3 chrX 40871474 40871779 -136102361 - AluSx SINE Alu 0 312 6 234 268 0 49 chrX 40871812 40871894 -136102246 + C-rich Low_complexity Low_complexity 1 78 0 390 341 0 0 chrX 40871917 40872090 -136102050 + C-rich Low_complexity Low_complexity 1 173 0 1636 143 4 8 chrX 40872514 40872772 -136101368 - AluSq SINE Alu -56 257 1 848 192 136 9 chrX 40872784 40872998 -136101142 - AluJb SINE Alu -26 286 46 1368 150 15 8 chrX 40872999 40873265 -136100875 + AluSg SINE Alu 6 273 -37 4700 72 2 6 chrX 40873416 40874043 -136100097 + L1P LINE L1 3722 4345 -1801 1503 181 31 16 chrX 40874738 40875058 -136099082 + L1M1 LINE L1 3237 3561 -4004 1134 151 6 6 chrX 40875060 40875239 -136098901 - THE1C LTR MaLR 0 375 197 2346 106 0 0 chrX 40875240 40875552 -136098588 + MER9 LTR ERVK 3 314 -197 229 367 0 0 chrX 40877823 40877962 -136096178 + C-rich Low_complexity Low_complexity 1 139 0 4028 34 2 0 chrX 40878062 40878532 -136095608 + L1PA5 LINE L1 5676 6146 -8 1582 173 7 0 chrX 40878704 40878999 -136095141 - AluJo SINE Alu -15 297 1 322 307 39 13 chrX 40879004 40879157 -136094983 - L1MA10 LINE L1 -9 6325 6169 320 256 40 32 chrX 40879161 40879286 -136094854 - L1ME1 LINE L1 -231 5935 5810 267 271 11 18 chrX 40879423 40879702 -136094438 + G-rich Low_complexity Low_complexity 1 276 0 8169 76 1 1 chrX 40880808 40882097 -136092043 - L1P2 LINE L1 -512 5643 4354 2204 112 0 6 chrX 40882659 40882971 -136091169 + AluSq SINE Alu 1 310 -3 310 263 0 17 chrX 40883037 40883155 -136090985 + FLAM_C SINE Alu 3 118 -15 496 322 0 0 chrX 40883214 40883388 -136090752 + C-rich Low_complexity Low_complexity 1 174 0 194 186 116 23 chrX 40883575 40883618 -136090522 - L2 LINE L2 -248 3065 3019 427 209 119 130 chrX 40883645 40883822 -136090318 - MER5B DNA MER1_type -3 175 1 586 286 55 35 chrX 40883827 40884082 -136090058 - L2 LINE L2 -339 2975 2716 652 208 37 12 chrX 40884094 40884282 -136089858 - L1MC4a LINE L1 -297 5824 5641 223 248 148 50 chrX 40884929 40885030 -136089110 + MIR SINE MIR 131 241 -21 1988 129 7 10 chrX 40886831 40887141 -136086999 - AluSx SINE Alu -3 309 1 182 333 0 39 chrX 40887500 40887578 -136086562 + L3 LINE CR1 1192 1266 -311 540 319 54 5 chrX 40888156 40888360 -136085780 - MIR SINE MIR -2 260 47 26 50 0 0 chrX 40888603 40888643 -136085497 + AT_rich Low_complexity Low_complexity 1 40 0 481 321 110 31 chrX 40888888 40889178 -136084962 + L1ME3 LINE L1 5636 5948 -214 24 0 0 0 chrX 40889416 40889440 -136084700 + AT_rich Low_complexity Low_complexity 1 24 0 508 334 74 38 chrX 40890119 40890511 -136083629 + L3 LINE CR1 1057 1462 -115 199 227 0 0 chrX 40890651 40890695 -136083445 - L3 LINE CR1 -6 1571 1528 401 300 162 29 chrX 40890873 40890899 -136083241 + MIR SINE MIR 3 24 -238 2235 103 3 0 chrX 40890899 40891210 -136082930 + AluSp SINE Alu 1 312 -1 401 300 162 29 chrX 40891210 40891393 -136082747 + MIR SINE MIR 24 240 -22 354 188 35 47 chrX 40891548 40891633 -136082507 + MER103 DNA DNA 67 150 -16 673 323 39 22 chrX 40891696 40891925 -136082215 - L3 LINE CR1 -1155 422 190 320 259 31 68 chrX 40892943 40893105 -136081035 + MIR3 SINE MIR 23 178 -30 213 333 117 17 chrX 40893835 40893955 -136080185 - MIR SINE MIR -21 241 110 240 111 0 0 chrX 40894119 40894155 -136079985 + (T)n Simple_repeat Simple_repeat 1 36 0 519 156 0 0 chrX 40894195 40894285 -136079855 - AluY SINE Alu -3 308 219 26 0 0 0 chrX 40894426 40894452 -136079688 + AT_rich Low_complexity Low_complexity 1 26 0 337 186 59 59 chrX 40894784 40894902 -136079238 + L2 LINE L2 2689 2806 -508 1991 97 31 66 chrX 40895129 40895448 -136078692 - AluSg SINE Alu -2 308 1 510 238 26 84 chrX 40895541 40895768 -136078372 + L1MC5 LINE L1 7226 7439 -522 833 242 49 24 chrX 40896691 40896978 -136077162 - MLT1L LTR MaLR 0 609 281 373 308 103 19 chrX 40897436 40897592 -136076548 + MIR SINE MIR 14 182 -80 1574 214 97 29 chrX 40897932 40898408 -136075732 - MER21B LTR ERV1 -56 807 276 1967 94 50 0 chrX 40898409 40898686 -136075454 - AluSx SINE Alu -21 291 1 937 135 9 2 chrX 40898789 40898947 -136075193 - L1PA16 LINE L1 -338 5828 5670 277 219 271 0 chrX 40898952 40899048 -136075092 - L2 LINE L2 -648 2666 2545 236 317 75 12 chrX 40900315 40900499 -136073641 - MIR SINE MIR -33 229 41 240 250 0 18 chrX 40900698 40900754 -136073386 + L2 LINE L2 3193 3247 -25 22 0 0 0 chrX 40901048 40901070 -136073070 + AT_rich Low_complexity Low_complexity 1 22 0 1824 225 16 50 chrX 40902255 40902414 -136071726 + HERVL68 LTR ERVL 1284 1447 -1590 836 140 0 29 chrX 40902414 40902550 -136071590 - FLAM_C SINE Alu 0 133 2 1824 225 16 50 chrX 40902550 40902874 -136071266 + HERVL68 LTR ERVL 1447 1751 -1286 292 133 33 0 chrX 40902885 40902945 -136071195 + CT-rich Low_complexity Low_complexity 2 63 0 1378 170 76 4 chrX 40902954 40903114 -136071026 - AluJo SINE Alu -14 298 151 324 0 0 0 chrX 40903114 40903150 -136070990 + (TG)n Simple_repeat Simple_repeat 2 37 0 1378 170 76 4 chrX 40903150 40903265 -136070875 - AluJo SINE Alu -161 151 3 1191 197 48 34 chrX 40903269 40903302 -136070838 + HERVL68 LTR ERVL 1740 1771 -1266 4335 114 25 8 chrX 40903302 40903944 -136070196 + MER39B LTR ERV1 1 653 0 1191 197 48 34 chrX 40903944 40904204 -136069936 + HERVL68 LTR ERVL 1771 2037 -1000 913 196 6 0 chrX 40904209 40904382 -136069758 + AluJb SINE Alu 137 310 -2 296 300 79 21 chrX 40904559 40904749 -136069391 + HERVL68 LTR ERVL 2218 2418 -619 376 222 14 140 chrX 40904955 40905029 -136069111 + MLT1B LTR MaLR 105 187 -203 2127 110 3 3 chrX 40905029 40905339 -136068801 + AluSx SINE Alu 1 310 -2 376 222 14 140 chrX 40905339 40905352 -136068788 + MLT1B LTR MaLR 187 200 -190 252 0 0 0 chrX 40905352 40905380 -136068760 + (TC)n Simple_repeat Simple_repeat 1 28 0 376 222 14 140 chrX 40905380 40905512 -136068628 + MLT1B LTR MaLR 200 297 -93 3264 225 52 30 chrX 40905612 40906458 -136067682 + HERVL68 LTR ERVL 2039 2903 -134 1821 187 31 8 chrX 40906458 40906811 -136067329 + MLT2D LTR ERVL 1 361 -53 255 103 0 0 chrX 40906816 40906855 -136067285 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chrX 40906855 40906899 -136067241 + (CA)n Simple_repeat Simple_repeat 2 45 0 471 139 14 0 chrX 40906925 40906997 -136067143 + HERVL68 LTR ERVL 2904 2976 -61 199 407 29 29 chrX 40907105 40907245 -136066895 - L2 LINE L2 -8 3264 3125 484 273 43 14 chrX 40907410 40907619 -136066521 - MER20B DNA MER1_type -287 496 282 253 206 151 0 chrX 40907640 40907713 -136066427 - MER20B DNA MER1_type -676 107 24 1603 225 45 26 chrX 40908181 40908688 -136065452 - L1MCc LINE L1 -1367 5574 5058 * 2356 243 84 65 chrX 40908687 40909864 -136064276 - L1MCc LINE L1 -2330 4611 3412 674 93 9 0 chrX 40909869 40909977 -136064163 + (TA)n Simple_repeat Simple_repeat 2 110 0 266 247 26 0 chrX 40909977 40910054 -136064086 - L1MCc LINE L1 -6328 95 17 315 305 11 11 chrX 40910123 40910218 -136063922 + MER58 DNA MER1_type 1 95 -120 791 281 96 14 chrX 40910252 40910615 -136063525 - L1MCc LINE L1 -3571 3370 2978 229 103 0 0 chrX 40910620 40910659 -136063481 - Alu SINE Alu -2 300 262 1008 261 20 45 chrX 40910671 40911024 -136063116 - L1MCc LINE L1 -6063 360 17 365 259 24 1 chrX 40911108 40911288 -136062852 + MER58 DNA MER1_type 16 2417 -3 1781 115 0 15 chrX 40911553 40911823 -136062317 + AluSx SINE Alu 39 304 -8 1243 193 106 90 chrX 40911829 40912316 -136061824 + MER66A LTR ERV1 106 478 0 1671 142 194 3 chrX 40912317 40912684 -136061456 - L1M2 LINE L1 -577 5735 5299 541 202 0 0 chrX 40912711 40912800 -136061340 - AluJb SINE Alu -75 237 149 306 221 143 14 chrX 40913717 40913852 -136060288 - L1ME4a LINE L1 0 6121 5968 380 140 0 43 chrX 40913852 40913945 -136060195 + L1MA7 LINE L1 6199 6287 -4 1569 182 48 0 chrX 40914074 40914365 -136059775 + AluJb SINE Alu 1 305 -7 208 257 0 14 chrX 40914371 40914441 -136059699 + A-rich Low_complexity Low_complexity 4 72 0 26 30 0 0 chrX 40914722 40914755 -136059385 + AT_rich Low_complexity Low_complexity 1 33 0 237 239 77 111 chrX 40915475 40915592 -136058548 + MER41A LTR ERV1 191 303 -251 * 1378 159 70 92 chrX 40915587 40915946 -136058194 + MER66A LTR ERV1 128 478 0 264 295 82 0 chrX 40916780 40916902 -136057238 + MER112 DNA MER1_type 124 255 -5 1839 137 65 0 chrX 40917027 40917319 -136056821 - AluSx SINE Alu -1 311 1 323 183 0 0 chrX 40917920 40917980 -136056160 - MSTB2 LTR MaLR -397 60 1 262 184 0 0 chrX 40917982 40918031 -136056109 - MLT1C LTR MaLR -272 195 147 2232 123 0 3 chrX 40918779 40919081 -136055059 + AluSx SINE Alu 1 301 -11 1502 208 65 25 chrX 40919245 40919704 -136054436 + MER110A LTR ERV1 26 482 -2 2759 107 8 3 chrX 40919778 40920151 -136053989 - THE1C LTR MaLR 0 375 1 1208 208 4 12 chrX 40920372 40920622 -136053518 + AluJo SINE Alu 45 292 -20 23 33 0 0 chrX 40920627 40920657 -136053483 + AT_rich Low_complexity Low_complexity 1 30 0 191 299 173 24 chrX 40923559 40923686 -136050454 - MIR SINE MIR -111 151 6 1528 193 3 33 chrX 40924519 40924825 -136049315 + AluJb SINE Alu 1 297 -15 2133 134 13 0 chrX 40926677 40926983 -136047157 - AluSx SINE Alu -2 310 1 2363 110 0 0 chrX 40928156 40928465 -136045675 - AluSc SINE Alu 0 309 1 1265 217 54 7 chrX 40928513 40928790 -136045350 + AluJo SINE Alu 1 290 -12 1789 187 158 13 chrX 40928835 40929220 -136044920 + MER21B LTR ERV1 1 441 -422 300 313 69 7 chrX 40929404 40929548 -136044592 + MIR SINE MIR 50 202 -60 29 0 0 0 chrX 40929724 40929753 -136044387 + AT_rich Low_complexity Low_complexity 1 29 0 856 318 75 25 chrX 40930018 40930508 -136043632 - REP3 LTR ERV -47 515 1 193 318 16 0 chrX 40930619 40930682 -136043458 - L2 LINE L2 -5 3308 3245 634 260 128 0 chrX 40930875 40931117 -136043023 - L1M4 LINE L1 -1235 4911 4639 501 300 186 6 chrX 40931144 40931471 -136042669 - L2 LINE L2 -1531 1783 1398 226 167 0 0 chrX 40931521 40931557 -136042583 + MLT1B LTR MaLR 1 36 -354 2253 156 10 10 chrX 40931595 40931980 -136042160 + MLT1B LTR MaLR 4 388 -2 239 222 74 0 chrX 40935604 40935658 -136038482 - MIR SINE MIR -111 151 94 8276 19 1 1 chrX 40936266 40937467 -136036673 + L1PA3 LINE L1 4955 6155 0 330 250 23 0 chrX 40938347 40938435 -136035705 - L1M4 LINE L1 -2462 3684 3595 252 0 0 0 chrX 40938508 40938536 -136035604 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 746 202 0 0 chrX 40938743 40938867 -136035273 - FLAM_C SINE Alu -9 124 1 1618 206 6 3 chrX 40940381 40940701 -136033439 + L1 LINE L1 4819 5139 -1007 843 235 54 64 chrX 40940715 40941014 -136033126 + L1MEc LINE L1 1987 2288 -3927 1417 160 113 0 chrX 40941014 40941270 -136032870 + AluJo SINE Alu 1 285 -27 843 235 54 64 chrX 40941270 40941684 -136032456 + L1MEc LINE L1 2288 2644 -3571 504 0 0 0 chrX 40942013 40942069 -136032071 + (TA)n Simple_repeat Simple_repeat 1 56 0 2517 169 11 55 chrX 40942071 40942615 -136031525 - LTR1 LTR ERV1 -265 520 1 453 36 0 0 chrX 40942730 40942785 -136031355 + (TA)n Simple_repeat Simple_repeat 1 55 0 503 247 52 26 chrX 40942785 40942979 -136031161 + L1M4 LINE L1 4286 4484 -1662 249 33 0 0 chrX 40942990 40943020 -136031120 + (TA)n Simple_repeat Simple_repeat 1 30 0 587 60 0 0 chrX 40943026 40943093 -136031047 - AluSg/x SINE Alu -30 280 214 1900 243 84 19 chrX 40943099 40943720 -136030420 + L1M4 LINE L1 4476 5136 -1010 182 172 0 0 chrX 40943883 40943912 -136030228 - MIR SINE MIR -72 190 162 504 299 25 30 chrX 40944102 40944303 -136029837 - MIR SINE MIR 0 262 63 198 339 50 41 chrX 40944660 40944781 -136029359 - MER5A DNA MER1_type 0 189 68 198 0 0 0 chrX 40945566 40945588 -136028552 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5245 99 16 4 chrX 40945602 40946339 -136027801 - L1PB1 LINE L1 -21 6846 6101 1558 16 11 37 chrX 40946339 40946526 -136027614 - L1PA4 LINE L1 -2 6153 5972 756 33 0 0 chrX 40946526 40946616 -136027524 + L1PA4 LINE L1 5855 5944 -210 * 15243 205 18 5 chrX 40946612 40948254 -136025886 - L1PB1 LINE L1 -748 6114 4495 1147 31 0 0 chrX 40948254 40948384 -136025756 - L1PA6 LINE L1 -3 6151 6022 15243 205 18 5 chrX 40948384 40950360 -136023780 - L1PB1 LINE L1 -2367 4495 2474 2488 174 11 2 chrX 40950460 40950930 -136023210 - L1PB1 LINE L1 -4970 1893 1420 3206 227 73 8 chrX 40950935 40951719 -136022421 - L1PB1 LINE L1 -5998 865 31 888 184 68 24 chrX 40951725 40951932 -136022208 - AluJo SINE Alu -13 299 84 237 246 55 36 chrX 40952155 40952265 -136021875 + MER20B DNA MER1_type 27 138 -645 * 458 296 41 10 chrX 40952262 40952458 -136021682 + MER20B DNA MER1_type 290 491 -292 216 0 0 0 chrX 40952989 40953013 -136021127 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1438 240 0 20 chrX 40953013 40953371 -136020769 - MLT2D LTR ERVL -63 351 1 2230 209 30 27 chrX 40953381 40953942 -136020198 - HERVL68-D LTR ERVL -144 2893 2331 312 345 47 0 chrX 40954581 40954729 -136019411 - MIR SINE MIR -62 200 46 21 0 0 0 chrX 40955398 40955419 -136018721 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 40955526 40955551 -136018589 + AT_rich Low_complexity Low_complexity 1 25 0 245 218 11 58 chrX 40955744 40955831 -136018309 + MIR SINE MIR 180 262 0 755 161 16 16 chrX 40955942 40956066 -136018074 + FLAM_C SINE Alu 1 124 -9 332 235 25 0 chrX 40956349 40956430 -136017710 + L1M4 LINE L1 3595 3677 -2469 1525 161 7 179 chrX 40956435 40956877 -136017263 + MER47A DNA MER2_type 1 366 0 1219 264 70 37 chrX 40956877 40957506 -136016634 + L1M4 LINE L1 3681 4330 -1816 3753 190 102 19 chrX 40957511 40958297 -136015843 - MER21B LTR ERV1 -12 851 1 1489 151 180 65 chrX 40958299 40958683 -136015457 - MSTA LTR MaLR 0 428 1 1178 213 18 15 chrX 40958768 40959040 -136015100 - AluJo SINE Alu -39 273 1 295 319 0 0 chrX 40959799 40959890 -136014250 - MER94 DNA DNA -39 95 5 1541 98 0 0 chrX 40960786 40960980 -136013160 - AluSx SINE Alu -118 194 1 1256 202 4 0 chrX 40964572 40964805 -136009335 - AluJo SINE Alu -34 278 45 1501 219 50 48 chrX 40965093 40965572 -136008568 - MER110A LTR ERV1 -2 466 19 2329 91 0 3 chrX 40966945 40967241 -136006899 - AluSc SINE Alu -14 295 1 271 292 83 0 chrX 40967300 40967420 -136006720 - MER112 DNA MER1_type -7 253 124 2781 133 0 23 chrX 40968226 40968655 -136005485 - L1PA11 LINE L1 -8 6166 5748 431 197 163 14 chrX 40968833 40968980 -136005160 - L1M4 LINE L1 -1227 4919 4751 183 100 0 0 chrX 40969025 40969055 -136005085 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 445 252 7 7 chrX 40969266 40969401 -136004739 - L2 LINE L2 -1655 1659 1525 287 133 0 0 chrX 40969430 40969475 -136004665 + MER77 LTR ERV1 561 605 0 759 296 43 72 chrX 40969523 40969978 -136004162 + HERVL68-D LTR ERVL 6 522 -2515 1544 183 29 0 chrX 40969978 40970257 -136003883 + AluJo SINE Alu 1 287 -25 759 296 43 72 chrX 40970257 40970489 -136003651 + HERVL68-D LTR ERVL 522 759 -2278 1648 233 59 33 chrX 40970507 40971018 -136003122 + HERVL68-D LTR ERVL 1834 2357 -680 543 192 0 0 chrX 40971200 40971299 -136002841 + FLAM_C SINE Alu 45 143 0 903 173 26 0 chrX 40971316 40971472 -136002668 + FRAM SINE Alu 1 154 -22 2018 104 35 3 chrX 40971614 40971903 -136002237 + AluSx SINE Alu 1 298 -14 1420 177 0 4 chrX 40972343 40972586 -136001554 - AluJb SINE Alu 0 312 71 291 191 0 0 chrX 40974357 40974420 -135999720 + (CA)n Simple_repeat Simple_repeat 1 63 0 1796 117 25 25 chrX 40975007 40975327 -135998813 + AluSx SINE Alu 1 320 0 1574 209 37 27 chrX 40976222 40976623 -135997517 + HERVL68-D LTR ERVL 2489 2893 -144 1452 224 8 20 chrX 40976633 40976990 -135997150 + MLT2D LTR ERVL 1 353 -61 180 0 0 0 chrX 40977001 40977021 -135997119 + (TC)n Simple_repeat Simple_repeat 1 20 0 189 0 0 0 chrX 40977021 40977042 -135997098 + (CA)n Simple_repeat Simple_repeat 1 21 0 428 100 17 0 chrX 40977078 40977138 -135997002 + HERVL68 LTR ERVL 2912 2972 -65 410 284 50 15 chrX 40977543 40977744 -135996396 - MER20B DNA MER1_type -286 497 290 268 243 29 0 chrX 40977773 40977843 -135996297 - MER20B DNA MER1_type -676 107 36 998 234 89 0 chrX 40978060 40978317 -135995823 + AluJb SINE Alu 6 285 -27 533 297 26 5 chrX 40978429 40978624 -135995516 - MER20B DNA MER1_type -294 489 291 823 201 72 14 chrX 40978962 40979171 -135994969 + AluJo SINE Alu 85 305 -7 489 309 10 29 chrX 40980420 40980624 -135993516 + MIR SINE MIR 63 262 0 2452 250 60 14 chrX 40981005 40981833 -135992307 - L1M4 LINE L1 -1008 5138 4273 1274 299 25 48 chrX 40981848 40982611 -135991529 - L1M4 LINE L1 -2330 3816 3072 778 132 15 37 chrX 40982611 40982747 -135991393 - AluSg/x SINE Alu 0 312 180 2340 105 0 0 chrX 40982762 40983066 -135991074 - AluSg SINE Alu -6 304 1 1958 221 68 30 chrX 40983071 40983664 -135990476 - L1M4 LINE L1 -3059 3087 2473 387 244 12 0 chrX 40983706 40983788 -135990352 - AluJb SINE Alu -175 127 45 1840 227 48 35 chrX 40983971 40984486 -135989654 - HERVL68-A1 LTR ERVL -680 2357 1836 703 302 58 61 chrX 40984491 40984737 -135989403 - HERVL68-A1 LTR ERVL -2262 775 530 1472 220 3 0 chrX 40984737 40985023 -135989117 - AluJo SINE Alu -25 287 1 703 302 58 61 chrX 40985023 40985462 -135988678 - HERVL68-A1 LTR ERVL -2507 530 9 301 209 116 0 chrX 40986023 40986109 -135988031 - L1M4 LINE L1 -1667 4479 4384 789 232 15 50 chrX 40986114 40986312 -135987828 + AluJo SINE Alu 2 192 -120 279 194 42 28 chrX 40986330 40986402 -135987738 + FRAM/FAM SINE Alu 18 90 -85 1847 201 131 16 chrX 40986491 40986906 -135987234 + MER21B LTR ERV1 1 554 -377 315 294 118 6 chrX 40987045 40987215 -135986925 + MIR SINE MIR 12 200 -62 263 317 30 12 chrX 40987324 40987491 -135986649 - MER113 DNA MER1_type? -341 180 11 230 312 96 55 chrX 40987692 40987910 -135986230 - REP3 LTR ERV -47 515 289 525 283 266 12 chrX 40988021 40988522 -135985618 - L2 LINE L2 -1535 1779 1152 2436 143 8 15 chrX 40988621 40989012 -135985128 - MLT1B LTR MaLR -2 388 1 1363 204 0 33 chrX 40989041 40989345 -135984795 - AluJo SINE Alu -18 294 1 877 199 14 1 chrX 40989606 40989788 -135984352 + L1 LINE L1 4797 4982 -1164 339 301 41 14 chrX 40989791 40989937 -135984203 + MER20B DNA MER1_type 342 491 -292 418 63 63 0 chrX 40990341 40990404 -135983736 - L1MA7 LINE L1 -7 6284 6218 279 241 139 15 chrX 40990426 40990563 -135983577 + L1ME4a LINE L1 5968 6121 0 324 98 39 0 chrX 40990675 40990726 -135983414 - MLT2A1 LTR ERVL -2 442 390 329 204 0 11 chrX 40990735 40990823 -135983317 + (TA)n Simple_repeat Simple_repeat 2 88 0 2956 86 10 5 chrX 40990823 40991217 -135982923 - MLT2A1 LTR ERVL -40 404 9 881 118 7 7 chrX 40991967 40992102 -135982038 - L1MA3 LINE L1 0 6305 6171 1983 129 13 26 chrX 40992130 40992440 -135981700 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 40992542 40992570 -135981570 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 40992606 40992626 -135981514 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 768 232 0 7 chrX 40992627 40992782 -135981358 + FRAM SINE Alu 12 165 -11 2781 197 20 2 chrX 40993023 40993560 -135980580 + L1 LINE L1 4784 5330 -816 838 146 7 21 chrX 40993561 40993705 -135980435 + AluJo SINE Alu 1 142 -170 925 301 14 7 chrX 40993705 40993991 -135980149 + L1MCc LINE L1 139 426 -5997 890 263 67 25 chrX 40994062 40994378 -135979762 - L1MA9 LINE L1 -30 6282 5954 498 109 30 20 chrX 40994418 40994519 -135979621 + CT-rich Low_complexity Low_complexity 4 105 0 310 148 37 0 chrX 40994531 40994585 -135979555 - L1MA9 LINE L1 -370 5942 5887 * 11659 33 11 0 chrX 40994577 40996626 -135977514 - L1PA4 LINE L1 -68 6087 4016 1028 179 56 0 chrX 40996626 40996821 -135977319 - MER110A LTR ERV1 -262 206 1 189 0 0 0 chrX 40996929 40996950 -135977190 + (TG)n Simple_repeat Simple_repeat 2 22 0 3137 122 19 33 chrX 40996961 40997477 -135976663 - L1MA5 LINE L1 -11 6289 5781 2180 130 60 0 chrX 40997511 40997879 -135976261 - L1MA4 LINE L1 -1 6299 5910 506 187 0 0 chrX 40997879 40997954 -135976186 - AluJ/FLAM SINE Alu -228 84 10 1817 144 3 27 chrX 40999934 41000233 -135973907 + AluSx SINE Alu 1 292 -20 196 333 95 27 chrX 41000450 41000597 -135973543 - MIR3 SINE MIR 0 208 52 2048 154 0 0 chrX 41002160 41002472 -135971668 - AluSx SINE Alu 0 312 1 1758 117 8 4 chrX 41003528 41003784 -135970356 + AluSq SINE Alu 34 290 -23 201 143 0 0 chrX 41003784 41003819 -135970321 + (CAAAC)n Simple_repeat Simple_repeat 5 39 0 229 114 45 0 chrX 41003901 41003945 -135970195 - MLT2A1 LTR ERVL 0 444 399 2049 183 41 26 chrX 41004045 41004583 -135969557 - MLT2A2 LTR ERVL -6 548 2 257 270 96 9 chrX 41005545 41005660 -135968480 - MER112 DNA MER1_type -12 248 124 2927 119 12 0 chrX 41006443 41006864 -135967276 - L1PA11 LINE L1 -1 6173 5748 358 226 158 0 chrX 41007031 41007177 -135966963 - L1M4 LINE L1 -1227 4919 4751 320 294 7 7 chrX 41007239 41007375 -135966765 + L2 LINE L2 1525 1660 -1654 327 279 174 18 chrX 41007581 41007800 -135966340 - L2 LINE L2 -1537 1777 1525 261 143 0 0 chrX 41007832 41007874 -135966266 + MER77 LTR ERV1 564 605 0 375 340 13 51 chrX 41007874 41008109 -135966031 + MER77-int LTR ERV1 5 230 -3961 * 947 280 59 58 chrX 41007943 41008364 -135965776 + HERVL68-D LTR ERVL 24 531 -2506 1506 212 4 0 chrX 41008364 41008642 -135965498 + AluJo SINE Alu 9 287 -25 947 280 59 58 chrX 41008642 41008871 -135965269 + HERVL68-D LTR ERVL 531 758 -2279 1551 253 58 31 chrX 41008889 41009406 -135964734 + HERVL68-D LTR ERVL 1836 2366 -671 926 178 16 70 chrX 41009515 41009757 -135964383 + AluJb SINE Alu 50 278 -34 2053 122 0 7 chrX 41010037 41010360 -135963780 + AluSp SINE Alu 6 313 0 2022 106 6 26 chrX 41011790 41012122 -135962018 + AluSq SINE Alu 9 334 0 2018 127 0 0 chrX 41012610 41012893 -135961247 - AluSx SINE Alu -19 293 11 2464 71 0 0 chrX 41013923 41014220 -135959920 - AluY SINE Alu -14 297 1 1208 204 27 44 chrX 41015285 41015579 -135958561 + AluJo SINE Alu 1 289 -13 1989 190 101 22 chrX 41015630 41016059 -135958081 + MER21B LTR ERV1 1 554 -377 267 347 48 0 chrX 41016221 41016368 -135957772 + MIR SINE MIR 47 200 -62 248 281 83 21 chrX 41016434 41016626 -135957514 - MER113 DNA MER1_type? -307 214 11 2049 228 35 25 chrX 41017041 41017606 -135956534 + HERVL68-D LTR ERVL 2323 2893 -144 1447 229 16 19 chrX 41017616 41017983 -135956157 + MLT2D LTR ERVL 1 366 -48 351 0 0 0 chrX 41018034 41018073 -135956067 + (CA)n Simple_repeat Simple_repeat 2 40 0 447 164 14 0 chrX 41018093 41018166 -135955974 + HERVL68 LTR ERVL 2899 2972 -65 930 215 62 5 chrX 41019102 41019311 -135954829 + AluJo SINE Alu 85 305 -7 364 314 15 44 chrX 41020561 41020765 -135953375 + MIR SINE MIR 65 262 0 22 0 0 0 chrX 41021125 41021147 -135952993 + AT_rich Low_complexity Low_complexity 1 22 0 2246 230 96 15 chrX 41021147 41021885 -135952255 - L1M4 LINE L1 -1007 5139 4342 486 326 48 24 chrX 41021955 41022289 -135951851 - L1M4 LINE L1 -2330 3816 3475 632 101 0 0 chrX 41023771 41023860 -135950280 - MLT2A2 LTR ERVL -363 90 2 640 49 0 0 chrX 41024831 41024913 -135949227 - L1PA2 LINE L1 0 6155 6074 4127 42 17 0 chrX 41025465 41025947 -135948193 + LTR2B LTR ERV1 1 490 0 2617 124 5 43 chrX 41026249 41026693 -135947447 - L1PA11 LINE L1 0 6174 5748 312 245 175 0 chrX 41026865 41027008 -135947132 - L1M4 LINE L1 -1228 4918 4751 240 345 7 0 chrX 41027066 41027205 -135946935 + L2 LINE L2 1521 1660 -1654 254 295 58 36 chrX 41027490 41027629 -135946511 - L2 LINE L2 -1648 1666 1525 264 143 0 0 chrX 41027661 41027703 -135946437 + MER77 LTR ERV1 564 605 0 758 329 32 44 chrX 41027755 41028197 -135945943 + HERVL68-D LTR ERVL 9 525 -2512 1473 199 11 3 chrX 41028197 41028483 -135945657 + AluJo SINE Alu 1 288 -24 758 329 32 44 chrX 41028483 41028715 -135945425 + HERVL68-D LTR ERVL 525 758 -2279 1463 231 62 45 chrX 41028727 41029255 -135944885 + HERVL68-D LTR ERVL 1830 2366 -671 880 246 0 25 chrX 41029376 41029616 -135944524 + AluJb SINE Alu 45 278 -34 507 96 0 0 chrX 41029756 41029839 -135944301 + (CA)n Simple_repeat Simple_repeat 2 84 0 3970 53 0 8 chrX 41029942 41030432 -135943708 + L1PA7 LINE L1 5669 6154 0 1258 243 3 13 chrX 41030445 41030749 -135943391 + AluJb SINE Alu 1 301 -1 2339 265 57 14 chrX 41031758 41032570 -135941570 - L1M4 LINE L1 -1022 5124 4278 635 273 58 68 chrX 41032572 41032953 -135941187 - L1M4 LINE L1 -2333 3813 3437 849 179 71 0 chrX 41032972 41033140 -135941000 - L1MA1 LINE L1 -5 6297 6118 279 71 0 0 chrX 41037567 41037609 -135936531 + (T)n Simple_repeat Simple_repeat 1 42 0 5678 152 10 16 chrX 41041068 41042645 -135931495 - L1MA2 LINE L1 -175 6129 4568 2387 267 67 29 chrX 41042647 41042982 -135931158 - L1M4 LINE L1 -2696 3450 3129 2144 123 10 0 chrX 41042982 41043291 -135930849 - AluSx SINE Alu 0 312 1 2387 267 67 29 chrX 41043291 41044128 -135930012 - L1M4 LINE L1 -3017 3129 2234 21 36 0 0 chrX 41044347 41044375 -135929765 + AT_rich Low_complexity Low_complexity 1 28 0 255 93 0 0 chrX 41044540 41044583 -135929557 + (A)n Simple_repeat Simple_repeat 1 43 0 515 216 6 0 chrX 41044898 41045060 -135929080 + CT-rich Low_complexity Low_complexity 3 165 0 4369 121 13 13 chrX 41045127 41045814 -135928326 - L1PA13 LINE L1 -2 6161 5475 945 269 16 41 chrX 41045867 41046232 -135927908 - L1MCc LINE L1 -6051 372 17 253 322 23 0 chrX 41046301 41046388 -135927752 + MER58 DNA MER1_type 1 89 -2331 1176 178 7 48 chrX 41046986 41047255 -135926885 + AluJo SINE Alu 45 302 -10 2330 72 10 3 chrX 41047831 41048124 -135926016 - AluSc SINE Alu -14 295 1 21 0 0 0 chrX 41049217 41049238 -135924902 + AT_rich Low_complexity Low_complexity 1 21 0 648 227 60 0 chrX 41050283 41050433 -135923707 - AluSg/x SINE Alu -18 292 134 813 233 4 40 chrX 41053421 41053649 -135920491 + AluJo SINE Alu 3 222 -90 25 0 0 0 chrX 41053678 41053703 -135920437 + AT_rich Low_complexity Low_complexity 1 25 0 1676 223 105 25 chrX 41053752 41054160 -135919980 + MER21B LTR ERV1 1 441 -422 380 300 65 10 chrX 41054560 41054760 -135919380 - MER113 DNA MER1_type? -297 224 14 1624 146 8 4 chrX 41054819 41055073 -135919067 + AluSq SINE Alu 52 306 -7 309 242 23 8 chrX 41055073 41055201 -135918939 + GA-rich Low_complexity Low_complexity 1 130 0 286 308 39 0 chrX 41055962 41056066 -135918074 + MIR SINE MIR 82 189 -73 3472 219 37 1 chrX 41057451 41058181 -135915959 - MLT1C-int LTR MaLR -615 756 1 2658 162 0 9 chrX 41058187 41058453 -135915687 - MLT1C LTR MaLR -6 461 199 2355 161 4 62 chrX 41058453 41058871 -135915269 - MSTB2 LTR MaLR -1 456 68 2030 136 0 31 chrX 41058871 41059188 -135914952 - AluSx SINE Alu -3 309 3 2355 161 4 62 chrX 41059188 41059253 -135914887 - MSTB2 LTR MaLR -389 68 1 2658 162 0 9 chrX 41059253 41059425 -135914715 - MLT1C LTR MaLR -268 199 27 186 43 0 0 chrX 41059658 41059681 -135914459 + (CTG)n Simple_repeat Simple_repeat 1 23 0 1192 214 7 31 chrX 41060557 41060851 -135913289 + AluJo SINE Alu 1 287 -15 2123 184 10 8 chrX 41060884 41061271 -135912869 + MLT1B LTR MaLR 1 388 -2 207 308 51 13 chrX 41061371 41061449 -135912691 + L2 LINE L2 1153 1233 -2081 292 296 159 13 chrX 41061653 41061879 -135912261 + L2 LINE L2 1525 1783 -1531 520 263 136 8 chrX 41061908 41062144 -135911996 + L1M4 LINE L1 4640 4905 -1241 703 331 67 26 chrX 41062510 41063002 -135911138 + REP3 LTR ERV 3 514 -48 380 300 65 10 chrX 41063222 41063422 -135910718 + MER113 DNA MER1_type? 14 224 -297 1175 228 140 25 chrX 41063822 41064178 -135909962 - MER21B LTR ERV1 -422 441 45 570 154 103 3 chrX 41264178 41264351 -135709789 - AluJo SINE Alu -75 237 1 22 0 0 0 chrX 41264593 41264615 -135709525 + AT_rich Low_complexity Low_complexity 1 22 0 1971 130 47 7 chrX 41264740 41265040 -135709100 - AluJb SINE Alu 0 312 1 741 214 0 0 chrX 41265040 41265166 -135708974 - FLAM_A SINE Alu -6 127 2 21 0 0 0 chrX 41265174 41265195 -135708945 + AT_rich Low_complexity Low_complexity 1 21 0 780 167 14 36 chrX 41265298 41265436 -135708704 - AluJo SINE Alu -176 136 2 625 200 9 17 chrX 41265674 41265789 -135708351 - AluJo/FRAM SINE Alu -23 289 176 1866 98 4 8 chrX 41265790 41266035 -135708105 - AluY SINE Alu -67 244 1 1278 190 148 8 chrX 41266054 41266317 -135707823 - AluJo SINE Alu -12 300 1 22 0 0 0 chrX 41266325 41266347 -135707793 + AT_rich Low_complexity Low_complexity 1 22 0 2543 73 0 6 chrX 41266349 41266662 -135707478 + AluY SINE Alu 1 311 0 2446 90 0 0 chrX 41267032 41267342 -135706798 - AluSq SINE Alu -3 310 1 2960 161 59 2 chrX 41268360 41268838 -135705302 + MLT1D LTR MaLR 1 505 0 470 270 43 9 chrX 41268854 41268969 -135705171 - L2 LINE L2 0 3272 3154 600 153 27 0 chrX 41269116 41269227 -135704913 - L1MD3 LINE L1 0 7995 7882 894 137 0 0 chrX 41269230 41269361 -135704779 - FLAM_C SINE Alu -12 131 1 2099 169 39 5 chrX 41269387 41269796 -135704344 - L1MC4a LINE L1 -343 7465 7043 255 283 98 0 chrX 41269975 41270067 -135704073 - MIR SINE MIR -71 191 91 2327 83 0 71 chrX 41270725 41271061 -135703079 - AluSx SINE Alu 0 312 1 205 361 66 16 chrX 41271310 41271432 -135702708 + MIR3 SINE MIR 3 130 -78 2241 116 0 0 chrX 41271542 41271844 -135702296 + AluSx SINE Alu 1 302 -10 1268 172 0 56 chrX 41271949 41272217 -135701923 + AluJo SINE Alu 44 296 -16 2117 138 0 0 chrX 41273276 41273567 -135700573 + AluJb SINE Alu 1 291 -21 2211 108 3 3 chrX 41273661 41273958 -135700182 + AluSx SINE Alu 1 297 -15 1543 148 121 0 chrX 41274029 41274286 -135699854 - AluJo SINE Alu -21 291 4 4158 132 44 75 chrX 41274313 41274365 -135699775 - L1MB4 LINE L1 0 6180 6128 2183 114 0 3 chrX 41274365 41274662 -135699478 - AluSx SINE Alu -16 296 1 4158 132 44 75 chrX 41274662 41274807 -135699333 - L1MB4 LINE L1 -52 6128 5980 2504 66 0 3 chrX 41274807 41275110 -135699030 + AluY SINE Alu 1 302 -9 4158 132 44 75 chrX 41275110 41275280 -135698860 - L1MB4 LINE L1 -200 5980 5806 2374 90 0 3 chrX 41275280 41275580 -135698560 + AluSg SINE Alu 1 299 -11 4158 132 44 75 chrX 41275580 41275939 -135698201 - L1MB4 LINE L1 -374 5806 5477 225 65 0 0 chrX 41275939 41275970 -135698170 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 4158 132 44 75 chrX 41275970 41276056 -135698084 - L1MB4 LINE L1 -703 5477 5390 601 218 222 51 chrX 41276056 41276172 -135697968 - MLT1B LTR MaLR -68 322 227 2319 103 0 3 chrX 41276172 41276482 -135697658 - AluSx SINE Alu -3 309 1 601 218 222 51 chrX 41276482 41276640 -135697500 - MLT1B LTR MaLR -163 227 1 1849 168 0 23 chrX 41277416 41277725 -135696415 - AluJb SINE Alu -10 302 1 1811 163 0 46 chrX 41277946 41278252 -135695888 - AluJb SINE Alu -20 292 1 2300 115 0 3 chrX 41278516 41278829 -135695311 - AluSx SINE Alu 0 312 1 2400 68 7 0 chrX 41279090 41279384 -135694756 + AluSp SINE Alu 2 297 -16 499 321 19 52 chrX 41279538 41279846 -135694294 + L1M4 LINE L1 2805 3102 -3044 27 73 0 0 chrX 41279870 41279925 -135694215 + AT_rich Low_complexity Low_complexity 1 55 0 2206 119 0 10 chrX 41279998 41280308 -135693832 + AluSx SINE Alu 1 307 -5 1691 159 10 30 chrX 41280406 41280701 -135693439 - AluJb SINE Alu -23 289 1 483 307 62 28 chrX 41280735 41281158 -135692982 - HAL1b LINE L1 -759 589 293 1787 142 60 7 chrX 41281724 41282005 -135692135 + AluJb SINE Alu 1 296 -16 1757 158 0 34 chrX 41282153 41282480 -135691660 - AluJb SINE Alu 0 317 1 198 89 107 0 chrX 41282559 41282615 -135691525 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 2005 138 3 0 chrX 41282907 41283197 -135690943 + AluSx SINE Alu 1 291 -21 1156 208 5 18 chrX 41283709 41283930 -135690210 + MER58A DNA MER1_type 1 218 -6 2387 81 0 0 chrX 41284249 41284545 -135689595 + AluSg SINE Alu 1 296 -14 2332 69 24 0 chrX 41285503 41285791 -135688349 - AluSc SINE Alu -14 295 1 4955 140 35 18 chrX 41285803 41286634 -135687506 - L1MA7 LINE L1 -4 6287 5443 2217 104 0 3 chrX 41286666 41286965 -135687175 - AluSg SINE Alu -12 298 1 458 230 122 14 chrX 41286974 41287122 -135687018 - MIR SINE MIR -74 188 25 1396 201 60 66 chrX 41287149 41287265 -135686875 + L1MC5 LINE L1 7412 7527 -434 2282 170 25 37 chrX 41287265 41287554 -135686586 + MER63B DNA MER1_type 2 287 -775 1973 125 0 47 chrX 41287554 41287884 -135686256 - AluSx SINE Alu 0 316 1 2282 170 25 37 chrX 41287884 41288029 -135686111 + MER63B DNA MER1_type 287 432 -4 1396 201 60 66 chrX 41288029 41288183 -135685957 + L1MC5 LINE L1 7527 7680 -281 1732 167 3 36 chrX 41288183 41288488 -135685652 - AluJb SINE Alu -14 298 4 1396 201 60 66 chrX 41288488 41288719 -135685421 + L1MC5 LINE L1 7680 7911 -50 51 31 0 0 chrX 41288947 41289012 -135685128 + AT_rich Low_complexity Low_complexity 1 65 0 213 224 0 0 chrX 41289547 41289605 -135684535 + (TA)n Simple_repeat Simple_repeat 2 59 0 2075 134 0 29 chrX 41289667 41289980 -135684160 + AluJo SINE Alu 1 304 -8 243 0 0 0 chrX 41289980 41290007 -135684133 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 297 0 0 0 chrX 41290006 41290039 -135684101 + (GA)n Simple_repeat Simple_repeat 2 34 0 2313 92 0 10 chrX 41290138 41290443 -135683697 + AluSx SINE Alu 1 302 -10 421 209 52 9 chrX 41290463 41290578 -135683562 - L1ME4a LINE L1 -199 5922 5803 2338 112 0 6 chrX 41291464 41291778 -135682362 - AluSx SINE Alu 0 312 1 604 121 48 38 chrX 41291835 41292003 -135682137 - L1MA7 LINE L1 -752 5431 5276 272 284 91 0 chrX 41292145 41292233 -135681907 + MIR SINE MIR 7 102 -160 1757 174 0 24 chrX 41292279 41292577 -135681563 + AluJo SINE Alu 1 291 -21 2126 119 0 0 chrX 41292579 41292898 -135681242 + AluSx SINE Alu 1 319 0 1694 102 164 4 chrX 41293033 41293289 -135680851 + AluSc SINE Alu 1 297 -12 2389 81 0 0 chrX 41294650 41294947 -135679193 - AluY SINE Alu -14 297 1 2199 114 0 7 chrX 41295148 41295446 -135678694 - AluSx SINE Alu -16 296 1 459 299 22 0 chrX 41296103 41296240 -135677900 - HAL1 LINE L1 -625 1882 1743 419 214 20 10 chrX 41296253 41296351 -135677789 - MLT1E2 LTR MaLR -279 347 249 1894 157 3 10 chrX 41296749 41297054 -135677086 + AluJo SINE Alu 1 303 -9 231 278 174 17 chrX 41297149 41297264 -135676876 + L2 LINE L2 3134 3266 -6 2316 78 7 7 chrX 41297543 41297838 -135676302 + AluSg SINE Alu 1 295 -15 2072 127 0 17 chrX 41298545 41298844 -135675296 - AluJb SINE Alu -18 294 1 21 0 0 0 chrX 41299618 41299639 -135674501 + AT_rich Low_complexity Low_complexity 1 21 0 2464 82 0 3 chrX 41300010 41300316 -135673824 - AluSp SINE Alu -8 305 1 229 281 109 0 chrX 41300949 41301013 -135673127 - L2 LINE L2 -61 3211 3141 2306 64 0 0 chrX 41301383 41301707 -135672433 - AluY SINE Alu 0 324 1 2250 116 0 3 chrX 41302443 41302746 -135671394 - AluSx SINE Alu -10 302 1 337 273 173 0 chrX 41304950 41305060 -135669080 + MIR3 SINE MIR 34 162 -46 890 254 134 32 chrX 41305088 41305430 -135668710 - L2 LINE L2 -61 3252 2876 582 235 171 0 chrX 41305523 41305693 -135668447 - MIR SINE MIR -16 246 48 2156 128 0 0 chrX 41305811 41306108 -135668032 - AluSx SINE Alu -15 297 1 272 275 28 76 chrX 41306660 41306871 -135667269 - L1MC4 LINE L1 -1 8041 7841 3741 179 85 41 chrX 41306912 41307005 -135667135 - L1ME2 LINE L1 -19 6145 6058 1278 203 14 5 chrX 41307005 41307222 -135666918 - MER58A DNA MER1_type -1 223 5 3741 179 85 41 chrX 41307222 41307316 -135666824 - L1ME2 LINE L1 -106 6058 5970 1745 178 3 3 chrX 41307316 41307614 -135666526 - AluJo SINE Alu -14 298 1 3741 179 85 41 chrX 41307614 41307751 -135666389 - L1ME2 LINE L1 -194 5970 5841 2296 94 7 0 chrX 41307751 41308050 -135666090 - AluSp SINE Alu -12 301 1 3741 179 85 41 chrX 41308050 41308926 -135665214 - L1ME2 LINE L1 -323 5841 4885 1159 139 0 56 chrX 41308918 41308949 -135665191 - L1M4 LINE L1 -656 5518 5487 * 2616 50 7 0 chrX 41308949 41309251 -135664889 - AluY SINE Alu -7 304 1 1159 139 0 56 chrX 41309251 41309434 -135664706 - L1M4 LINE L1 -687 5487 5316 893 168 0 0 chrX 41309434 41309577 -135664563 - FLAM_C SINE Alu 0 143 1 2633 174 18 12 chrX 41309577 41310306 -135663834 - L1M4 LINE L1 -814 5332 4484 * 4188 112 61 79 chrX 41310304 41310394 -135663746 + L1MA9 LINE L1 5494 5584 -728 1961 141 3 20 chrX 41310394 41310699 -135663441 + AluJb SINE Alu 1 300 -12 4188 112 61 79 chrX 41310699 41311246 -135662894 + L1MA9 LINE L1 5584 6115 -197 2106 131 3 0 chrX 41311246 41311536 -135662604 - AluSx SINE Alu -21 291 1 4188 112 61 79 chrX 41311536 41311731 -135662409 + L1MA9 LINE L1 6115 6312 0 1631 185 56 33 chrX 41311747 41311782 -135662358 - L1M4 LINE L1 -1667 4479 4446 2526 136 0 8 chrX 41311782 41312157 -135661983 - L1PA16 LINE L1 0 6166 5795 1631 185 56 33 chrX 41312157 41312428 -135661712 - L1M4 LINE L1 -1700 4446 4157 2230 98 0 3 chrX 41312428 41312723 -135661417 - AluSg SINE Alu -16 294 1 1631 185 56 33 chrX 41312723 41312864 -135661276 - L1M4 LINE L1 -1989 4157 4021 472 221 154 0 chrX 41312885 41313021 -135661119 - L1ME1 LINE L1 -5 6161 6005 1171 202 5 0 chrX 41313155 41313373 -135660767 - AluJb SINE Alu -10 302 84 3224 230 28 71 chrX 41313474 41313628 -135660512 - L1M4 LINE L1 -972 5568 5409 2279 82 11 0 chrX 41313628 41313950 -135660190 - AluSq SINE Alu 0 325 1 3224 230 28 71 chrX 41313950 41314627 -135659513 - L1M4 LINE L1 -1131 5409 4704 1978 156 0 3 chrX 41314627 41314928 -135659212 - AluJb SINE Alu -12 300 1 3224 230 28 71 chrX 41314928 41315103 -135659037 - L1M4 LINE L1 -1836 4704 4523 2528 72 0 0 chrX 41315103 41315407 -135658733 + AluSc SINE Alu 1 304 -5 3224 230 28 71 chrX 41315407 41315722 -135658418 - L1M4 LINE L1 -2017 4523 4337 2242 104 0 7 chrX 41315722 41316021 -135658119 + AluSx SINE Alu 1 297 -15 3224 230 28 71 chrX 41316021 41316291 -135657849 - L1M4 LINE L1 -2203 4337 4057 1195 216 56 73 chrX 41316260 41316377 -135657763 - L1MDa LINE L1 -3526 3014 2897 * 2333 99 16 0 chrX 41316377 41316681 -135657459 - AluSx SINE Alu -3 309 1 1195 216 56 73 chrX 41316681 41317263 -135656877 - L1MDa LINE L1 -3643 2897 2325 519 17 0 0 chrX 41317263 41317323 -135656817 + (CA)n Simple_repeat Simple_repeat 1 60 0 1195 216 56 73 chrX 41317323 41317413 -135656727 - L1MDa LINE L1 -4215 2325 2235 2203 100 0 3 chrX 41317415 41317706 -135656434 - AluSx SINE Alu -22 290 1 1815 164 3 20 chrX 41317706 41318005 -135656135 - AluJo SINE Alu -8 304 11 374 175 126 10 chrX 41318012 41318115 -135656025 - L1MC4 LINE L1 -1116 6926 6812 1548 229 88 26 chrX 41318115 41318569 -135655571 - L2 LINE L2 -1600 1714 1233 752 103 0 9 chrX 41319179 41319286 -135654854 - AluSx SINE Alu -13 297 192 1140 92 0 0 chrX 41319286 41319428 -135654712 - AluSx SINE Alu -170 142 1 189 147 0 0 chrX 41320232 41320266 -135653874 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 837 153 51 0 chrX 41320272 41320409 -135653731 - FRAM SINE Alu -4 172 29 195 222 0 0 chrX 41320452 41320488 -135653652 - L2 LINE L2 -17 3255 3220 607 329 82 31 chrX 41321097 41321547 -135652593 - HAL1b LINE L1 -542 806 334 21 0 0 0 chrX 41321558 41321579 -135652561 + AT_rich Low_complexity Low_complexity 1 21 0 2283 88 3 44 chrX 41321660 41321806 -135652334 + AluSq SINE Alu 1 151 -162 2907 47 14 0 chrX 41321806 41322168 -135651972 + L1PA8 LINE L1 5805 6171 -1 2283 88 3 44 chrX 41322168 41322339 -135651801 + AluSq SINE Alu 151 305 -8 2009 113 28 0 chrX 41322341 41322632 -135651508 + AluSp SINE Alu 1 299 -14 391 228 118 0 chrX 41322832 41322959 -135651181 - L1ME3 LINE L1 0 6162 6021 2031 223 41 7 chrX 41322962 41323500 -135650640 - L1ME3 LINE L1 -303 5859 5304 1703 173 79 64 chrX 41323488 41324238 -135649902 - L1MC4 LINE L1 -417 7625 6813 * 1486 153 0 46 chrX 41324238 41324499 -135649641 - AluJo SINE Alu -23 289 41 1703 173 79 64 chrX 41324499 41324611 -135649529 - L1MC4 LINE L1 -1229 6813 6704 423 0 0 0 chrX 41324611 41324658 -135649482 + (TG)n Simple_repeat Simple_repeat 1 47 0 718 241 23 78 chrX 41324733 41324915 -135649225 + L2 LINE L2 2281 2447 -867 2209 104 6 31 chrX 41324915 41325233 -135648907 - AluSx SINE Alu 0 312 3 718 241 23 78 chrX 41325233 41325307 -135648833 + L2 LINE L2 2447 2523 -791 365 73 0 0 chrX 41325314 41325369 -135648771 - L1MA3 LINE L1 -5 6300 6246 834 133 7 7 chrX 41325370 41325505 -135648635 + AluJb SINE Alu 1 135 -177 1349 60 0 0 chrX 41325505 41325687 -135648453 - L1PA8 LINE L1 -352 5820 5639 2578 44 3 0 chrX 41325687 41326004 -135648136 + L1PA8 LINE L1 5845 6163 -9 25 0 0 0 chrX 41326004 41326029 -135648111 + AT_rich Low_complexity Low_complexity 1 25 0 1040 198 0 0 chrX 41326029 41326196 -135647944 + AluJb SINE Alu 129 295 -17 2585 93 65 16 chrX 41326196 41326645 -135647495 - L1MA3 LINE L1 -50 6255 5785 823 284 57 25 chrX 41326650 41326728 -135647412 + L2 LINE L2 2516 2590 -724 1394 124 169 8 chrX 41326728 41326977 -135647163 - AluSg1 SINE Alu -20 289 1 823 284 57 25 chrX 41326977 41327215 -135646925 + L2 LINE L2 2590 2842 -472 2199 114 0 3 chrX 41327236 41327535 -135646605 - AluSx SINE Alu -14 298 1 1470 154 86 39 chrX 41328273 41328396 -135645744 + AluJb SINE Alu 1 117 -195 2155 110 10 0 chrX 41328396 41328687 -135645453 - AluSx SINE Alu -18 294 1 1470 154 86 39 chrX 41328687 41328842 -135645298 + AluJb SINE Alu 117 292 -20 22 0 0 0 chrX 41328952 41328974 -135645166 + AT_rich Low_complexity Low_complexity 1 22 0 283 330 60 0 chrX 41329041 41329141 -135644999 + MIR SINE MIR 38 143 -119 228 295 158 0 chrX 41329317 41329412 -135644728 + MIR SINE MIR 151 260 -2 183 300 17 17 chrX 41329508 41329568 -135644572 + MER5B DNA MER1_type 69 128 -50 1892 135 76 0 chrX 41329780 41330069 -135644071 - AluSp SINE Alu -2 311 1 288 250 60 36 chrX 41330102 41330186 -135643954 + L2 LINE L2 3214 3299 -14 347 238 94 116 chrX 41330232 41330552 -135643588 + L1ME4a LINE L1 5596 5908 -213 22 70 0 0 chrX 41330655 41330698 -135643442 + AT_rich Low_complexity Low_complexity 1 43 0 836 252 84 26 chrX 41330714 41331024 -135643116 + L1ME4a LINE L1 5505 5832 -289 183 42 0 0 chrX 41331091 41331115 -135643025 + (TG)n Simple_repeat Simple_repeat 2 25 0 611 257 26 7 chrX 41331290 41331442 -135642698 + MER8 DNA MER2_type 1 155 -84 858 189 78 0 chrX 41331458 41331611 -135642529 - FRAM SINE Alu -10 166 2 2233 103 3 25 chrX 41331709 41332028 -135642112 + AluSx SINE Alu 1 312 0 188 281 88 94 chrX 41332654 41332814 -135641326 - L2 LINE L2 -469 2845 2687 949 185 17 62 chrX 41333850 41334105 -135640035 - L1MDb LINE L1 -5102 1307 1065 2079 145 0 0 chrX 41334105 41334402 -135639738 + AluSx SINE Alu 1 297 -15 949 185 17 62 chrX 41334402 41334438 -135639702 - L1MDb LINE L1 -5344 1065 1029 2407 95 0 0 chrX 41334438 41334743 -135639397 - AluSx SINE Alu -7 305 1 1205 204 62 57 chrX 41334750 41334922 -135639218 - L1MDb LINE L1 -5344 1065 895 2314 109 16 0 chrX 41334922 41335226 -135638914 - AluSx SINE Alu -3 309 1 1205 204 62 57 chrX 41335226 41335441 -135638699 - L1MDb LINE L1 -5514 895 676 767 307 12 4 chrX 41335548 41335799 -135638341 - L1MDb LINE L1 -6136 273 21 684 101 0 18 chrX 41336619 41336728 -135637412 - L1MB8 LINE L1 -1 6177 6071 279 288 152 0 chrX 41337142 41337274 -135636866 - L1ME4a LINE L1 -19 6102 5951 651 268 47 71 chrX 41337319 41337459 -135636681 - MIR SINE MIR -10 252 119 2343 99 0 0 chrX 41337459 41337751 -135636389 + AluSp SINE Alu 1 292 -21 651 268 47 71 chrX 41337751 41337864 -135636276 - MIR SINE MIR -143 119 5 240 216 59 49 chrX 41337887 41337989 -135636151 - L1ME4a LINE L1 -215 5906 5804 229 263 12 0 chrX 41338044 41338124 -135636016 + CT-rich Low_complexity Low_complexity 3 83 0 557 266 29 6 chrX 41338124 41338297 -135635843 - L1ME4a LINE L1 -415 5706 5530 196 276 20 82 chrX 41338928 41339008 -135635132 + MIR3 SINE MIR 96 169 -39 579 273 42 7 chrX 41339008 41339151 -135634989 + MER5B DNA MER1_type 2 149 -29 1905 141 10 14 chrX 41339173 41339463 -135634677 + AluJo SINE Alu 2 290 -22 24 0 0 0 chrX 41339469 41339493 -135634647 + AT_rich Low_complexity Low_complexity 1 24 0 660 154 0 0 chrX 41339547 41339664 -135634476 - L1MA3 LINE L1 0 6305 6189 28 0 0 0 chrX 41339774 41339802 -135634338 + AT_rich Low_complexity Low_complexity 1 28 0 2128 108 49 0 chrX 41340051 41340337 -135633803 - AluSx SINE Alu -12 300 1 2421 109 3 0 chrX 41340643 41340955 -135633185 - AluSq SINE Alu 0 313 1 323 299 0 0 chrX 41342205 41342302 -135631838 - L1ME1 LINE L1 -24 6142 6046 2108 70 56 21 chrX 41344493 41344777 -135629363 - AluSg SINE Alu -16 294 1 231 246 0 0 chrX 41344948 41345013 -135629127 - L1ME1 LINE L1 -1902 5906 5842 290 220 10 20 chrX 41345168 41345268 -135628872 + (TA)n Simple_repeat Simple_repeat 1 99 0 249 181 162 57 chrX 41345269 41345374 -135628766 - L1ME1 LINE L1 -1903 5905 5790 44 20 0 0 chrX 41345378 41345429 -135628711 + AT_rich Low_complexity Low_complexity 1 51 0 400 246 112 0 chrX 41345681 41345860 -135628280 - HAL1 LINE L1 -856 1634 1436 1067 151 38 5 chrX 41345881 41346067 -135628073 + MER3 DNA MER1_type 18 209 0 378 319 94 56 chrX 41346113 41346527 -135627613 - L1MEd LINE L1 -1110 1380 859 631 294 81 40 chrX 41346545 41347040 -135627100 + L1MC/D LINE L1 5243 5758 -747 360 111 0 0 chrX 41347194 41347248 -135626892 + (TG)n Simple_repeat Simple_repeat 2 55 0 1813 185 0 0 chrX 41347248 41347534 -135626606 - AluJo SINE Alu -26 286 1 384 22 0 0 chrX 41347551 41347596 -135626544 + (CA)n Simple_repeat Simple_repeat 2 46 0 3285 78 22 19 chrX 41347746 41348210 -135625930 - MER4C LTR ERV1 0 465 1 462 289 59 20 chrX 41348266 41348418 -135625722 + MIR SINE MIR 20 177 -85 3878 213 91 21 chrX 41348515 41349291 -135624849 - L1MB5 LINE L1 -36 6138 5418 2466 54 0 19 chrX 41349291 41349605 -135624535 - AluY SINE Alu -3 308 1 3878 213 91 21 chrX 41349605 41349626 -135624514 - L1MB5 LINE L1 -756 5418 5400 816 148 0 15 chrX 41349626 41349761 -135624379 + FLAM_C SINE Alu 1 133 0 3878 213 91 21 chrX 41349761 41350762 -135623378 - L1MB5 LINE L1 -774 5400 4162 2291 118 0 0 chrX 41350770 41351067 -135623073 - AluSx SINE Alu -15 297 1 244 250 89 0 chrX 41351774 41351830 -135622310 - L2 LINE L2 -71 3242 3182 2276 91 7 3 chrX 41352409 41352716 -135621424 - AluSq SINE Alu -5 308 1 441 0 0 0 chrX 41353581 41353630 -135620510 + (TTTTG)n Simple_repeat Simple_repeat 5 53 0 2371 92 3 3 chrX 41354485 41354789 -135619351 - AluSq SINE Alu -9 304 1 1976 124 0 48 chrX 41356316 41356630 -135617510 + AluSx SINE Alu 1 299 -13 427 242 227 33 chrX 41356665 41356996 -135617144 - L1MC4a LINE L1 -1666 6142 5748 2406 83 0 3 chrX 41357152 41357452 -135616688 + AluSx SINE Alu 1 299 -13 2438 86 0 0 chrX 41357890 41358194 -135615946 - AluY SINE Alu -7 304 1 1662 187 10 3 chrX 41358358 41358647 -135615493 - AluJo SINE Alu -21 291 1 1741 157 7 21 chrX 41358715 41359045 -135615095 - AluJo SINE Alu 0 327 2 303 161 0 0 chrX 41359226 41359282 -135614858 + CT-rich Low_complexity Low_complexity 3 58 0 1789 166 6 41 chrX 41359282 41359596 -135614544 - AluJo SINE Alu -9 303 1 2187 112 0 0 chrX 41360297 41360583 -135613557 + AluSq SINE Alu 1 286 -27 420 181 0 0 chrX 41360583 41360666 -135613474 + (CATA)n Simple_repeat Simple_repeat 3 85 0 2124 183 37 45 chrX 41360925 41361434 -135612706 + MLT1D LTR MaLR 1 505 0 1779 208 34 38 chrX 41361926 41362402 -135611738 - L1ME LINE L1 -379 5787 5314 465 126 63 72 chrX 41362416 41362527 -135611613 - L1MD1 LINE L1 -1 6241 6132 3750 217 50 16 chrX 41362545 41363374 -135610766 - L1ME LINE L1 -830 5316 4437 724 67 39 0 chrX 41363374 41363478 -135610662 - L1PA15 LINE L1 -4 6161 6054 3750 217 50 16 chrX 41363478 41363800 -135610340 - L1ME LINE L1 -1709 4437 4127 463 204 48 0 chrX 41363805 41363908 -135610232 - L1ME LINE L1 -2051 4095 3988 225 164 55 0 chrX 41363971 41364026 -135610114 - L1 LINE L1 -2467 3679 3622 1404 179 77 61 chrX 41364058 41364449 -135609691 - L1MB7 LINE L1 0 6184 5788 2806 157 18 54 chrX 41364457 41364595 -135609545 - L1MB8 LINE L1 -118 6060 5919 1650 115 50 0 chrX 41364595 41364865 -135609275 + AluJb SINE Alu 38 285 -27 2806 157 18 54 chrX 41364865 41365284 -135608856 - L1MB8 LINE L1 -259 5919 5522 991 204 17 26 chrX 41365284 41365572 -135608568 + L1MB8 LINE L1 5282 5490 -688 2802 157 22 147 chrX 41365612 41365869 -135608271 - L1MB8 LINE L1 -906 5240 4952 2360 87 7 0 chrX 41365869 41366179 -135607961 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 41366179 41366239 -135607901 - L1MB8 LINE L1 -1194 4952 4886 2411 103 0 0 chrX 41366239 41366551 -135607589 - AluSx SINE Alu 0 312 1 2802 157 22 147 chrX 41366551 41367089 -135607051 - L1MB8 LINE L1 -1260 4886 4504 2304 122 0 0 chrX 41367089 41367400 -135606740 - AluSx SINE Alu -1 311 1 2802 157 22 147 chrX 41367400 41367458 -135606682 - L1MB8 LINE L1 -1642 4504 4440 1260 158 0 36 chrX 41367460 41367707 -135606433 - AluJo SINE Alu 0 310 72 988 192 77 35 chrX 41367716 41367870 -135606270 - L1MB8 LINE L1 -3453 2693 2522 2544 57 0 0 chrX 41367870 41368171 -135605969 + AluY SINE Alu 1 301 -10 988 192 77 35 chrX 41368171 41368276 -135605864 - L1MB8 LINE L1 -3624 2522 2423 2351 84 7 0 chrX 41368371 41368667 -135605473 - AluSp SINE Alu -15 298 1 923 225 56 107 chrX 41369441 41369798 -135604342 - L1MEc LINE L1 -3798 3159 2786 225 0 0 0 chrX 41369798 41369823 -135604317 + (TA)n Simple_repeat Simple_repeat 2 26 0 923 225 56 107 chrX 41369823 41369851 -135604289 - L1MEc LINE L1 -4171 2786 2758 2160 130 3 0 chrX 41369851 41370144 -135603996 - AluSx SINE Alu -18 294 1 923 225 56 107 chrX 41370144 41370157 -135603983 - L1MEc LINE L1 -4199 2758 2746 1660 173 19 42 chrX 41370157 41370469 -135603671 - AluJo SINE Alu -7 305 1 923 225 56 107 chrX 41370469 41370554 -135603586 - L1MEc LINE L1 -4211 2746 2658 2336 113 0 0 chrX 41370554 41370864 -135603276 - AluSq SINE Alu -3 310 1 2192 94 6 31 chrX 41370867 41371187 -135602953 - AluSx SINE Alu 0 312 1 923 225 56 107 chrX 41371187 41371612 -135602528 - L1MEc LINE L1 -4301 2656 2369 1761 149 11 0 chrX 41372174 41372442 -135601698 - AluJo SINE Alu -16 296 26 2289 73 43 7 chrX 41373039 41373341 -135600799 - AluSq SINE Alu 0 313 1 1536 248 53 2 chrX 41373344 41373799 -135600341 - L1MEc LINE L1 -4728 2231 1754 2167 110 3 0 chrX 41373846 41374136 -135600004 - AluSx SINE Alu -21 291 1 2035 216 88 111 chrX 41374151 41374422 -135599718 - L1MEc LINE L1 -5061 1794 1518 1511 164 17 13 chrX 41374422 41374660 -135599480 + MER8 DNA MER2_type 1 239 0 2035 216 88 111 chrX 41374660 41374981 -135599159 - L1MEc LINE L1 -5337 1518 1191 1480 143 4 86 chrX 41374981 41375103 -135599037 - AluJo SINE Alu -56 256 126 1977 107 28 17 chrX 41375103 41375392 -135598748 - AluSc SINE Alu -17 292 1 1480 143 4 86 chrX 41375392 41375403 -135598737 - AluJo SINE Alu -186 126 116 2441 67 10 0 chrX 41375403 41375701 -135598439 - AluY SINE Alu -10 301 1 1480 143 4 86 chrX 41375701 41375845 -135598295 - AluJo SINE Alu -196 116 1 2035 216 88 111 chrX 41375845 41376271 -135597869 - L1MEc LINE L1 -5664 1191 798 198 0 0 0 chrX 41376424 41376446 -135597694 + (TA)n Simple_repeat Simple_repeat 2 23 0 5069 71 25 10 chrX 41376453 41377556 -135596584 - SVA Other Other -955 1369 19 1263 80 0 0 chrX 41377599 41377761 -135596379 - AluY SINE Alu -7 304 143 2093 53 0 4 chrX 41377761 41378008 -135596132 - AluY SINE Alu -65 246 1 332 309 142 51 chrX 41378008 41378303 -135595837 - L1MEc LINE L1 -6207 648 327 1087 218 67 65 chrX 41378318 41378456 -135595684 - L1M4 LINE L1 -2528 3618 3482 2183 98 0 20 chrX 41378456 41378753 -135595387 + AluSx SINE Alu 1 291 -21 1087 218 67 65 chrX 41378753 41379150 -135594990 - L1M4 LINE L1 -2664 3482 3082 2293 86 0 3 chrX 41379156 41379458 -135594682 - AluSg SINE Alu -1 309 9 1542 153 0 41 chrX 41379490 41379758 -135594382 + AluJb SINE Alu 38 294 -18 3088 172 63 26 chrX 41379758 41380383 -135593757 - L1MC4a LINE L1 -1087 6698 6086 424 221 33 33 chrX 41380368 41380490 -135593650 - L1MC3 LINE L1 -1579 6206 6085 * 503 216 58 37 chrX 41380463 41380490 -135593650 - L1M4 LINE L1 -3168 2978 2953 2304 99 0 0 chrX 41380490 41380794 -135593346 - AluY SINE Alu -7 304 1 503 216 58 37 chrX 41380794 41380906 -135593234 - L1M4 LINE L1 -3193 2953 2831 2045 116 0 13 chrX 41380906 41381207 -135592933 - AluSg SINE Alu -5 305 9 503 216 58 37 chrX 41381207 41381256 -135592884 - L1M4 LINE L1 -3315 2831 2785 2288 114 0 0 chrX 41381280 41381579 -135592561 - AluSx SINE Alu -13 299 1 482 265 81 27 chrX 41381757 41381980 -135592160 - L1MEc LINE L1 -6613 246 12 22 35 0 0 chrX 41382038 41382067 -135592073 + AT_rich Low_complexity Low_complexity 1 29 0 1857 151 3 23 chrX 41382101 41382400 -135591740 - AluJo SINE Alu -19 293 1 579 242 51 6 chrX 41382710 41382867 -135591273 + MER103 DNA DNA 2 165 -1 2310 115 0 0 chrX 41382888 41383193 -135590947 + AluSx SINE Alu 1 305 -7 315 0 0 0 chrX 41383279 41383314 -135590826 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1186 114 0 0 chrX 41383317 41383475 -135590665 - AluSg/x SINE Alu -31 279 122 2028 219 125 8 chrX 41383539 41384036 -135590104 + MER68 LTR ERV1 1 555 -7 1490 137 5 0 chrX 41384065 41384276 -135589864 + AluJb SINE Alu 1 212 -100 2502 52 0 0 chrX 41384315 41384603 -135589537 + AluY SINE Alu 1 288 -23 531 289 96 5 chrX 41384618 41384805 -135589335 - MIR SINE MIR -57 205 2 2334 106 0 6 chrX 41384923 41385235 -135588905 + AluSq SINE Alu 1 310 -3 2179 122 3 0 chrX 41385687 41385991 -135588149 - AluSx SINE Alu -7 305 1 185 357 85 31 chrX 41386000 41386129 -135588011 - L2 LINE L2 -619 2695 2560 1589 182 37 14 chrX 41386326 41386622 -135587518 - AluJo SINE Alu -9 303 1 225 65 0 0 chrX 41387107 41387138 -135587002 + (TG)n Simple_repeat Simple_repeat 2 32 0 314 86 0 0 chrX 41387160 41387211 -135586929 - Alu SINE Alu -20 282 241 360 59 0 0 chrX 41387455 41387506 -135586634 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 1990 118 4 0 chrX 41387529 41387800 -135586340 - AluSx SINE Alu -35 277 6 2273 102 7 0 chrX 41388321 41388616 -135585524 + AluSx SINE Alu 1 297 -15 1952 91 0 0 chrX 41388786 41389029 -135585111 - AluSx SINE Alu -24 288 46 278 281 223 11 chrX 41389052 41389211 -135584929 + MIR SINE MIR 16 198 -64 336 300 86 7 chrX 41389756 41389896 -135584244 + MIR3 SINE MIR 51 201 -7 629 185 7 89 chrX 41389993 41390033 -135584107 + MER94 DNA DNA 1 43 -91 2445 71 7 0 chrX 41390033 41390328 -135583812 - AluSg SINE Alu -13 297 1 629 185 7 89 chrX 41390328 41390433 -135583707 + MER94 DNA DNA 43 134 0 1002 182 136 5 chrX 41390918 41391116 -135583024 - MER58A DNA MER1_type 0 224 1 746 218 83 0 chrX 41392092 41392248 -135581892 + MIR SINE MIR 40 208 -54 778 288 116 74 chrX 41392411 41392873 -135581267 - L2 LINE L2 -34 3238 2797 2339 92 3 6 chrX 41392873 41393187 -135580953 - AluSq SINE Alu 0 313 1 778 288 116 74 chrX 41393187 41393635 -135580505 - L2 LINE L2 -475 2797 2302 555 207 55 7 chrX 41393678 41393823 -135580317 - HAL1b LINE L1 -6 1342 1191 1905 96 0 15 chrX 41394995 41395255 -135578885 - AluSg SINE Alu -14 296 41 631 258 105 18 chrX 41400107 41400336 -135573804 - MIR SINE MIR -12 250 2 2362 96 0 0 chrX 41400416 41400717 -135573423 - AluSg SINE Alu -9 301 1 2129 134 0 3 chrX 41400720 41401019 -135573121 - AluJb SINE Alu -14 298 1 232 190 17 69 chrX 41401513 41401571 -135572569 + MIR3 SINE MIR 108 162 -46 529 190 113 21 chrX 41401758 41401900 -135572240 + MIR SINE MIR 90 244 -18 2224 94 0 0 chrX 41402160 41402437 -135571703 + AluSc SINE Alu 1 277 -32 483 256 107 48 chrX 41402724 41402788 -135571352 - MER5B DNA MER1_type 0 178 119 571 96 85 0 chrX 41402788 41402882 -135571258 + L1MB2 LINE L1 6068 6169 -2 483 256 107 48 chrX 41402882 41402985 -135571155 - MER5B DNA MER1_type -59 119 1 270 236 154 18 chrX 41403268 41403378 -135570762 - MIR SINE MIR -1 261 137 271 297 33 0 chrX 41403383 41403474 -135570666 + L2 LINE L2 3220 3313 0 428 293 60 8 chrX 41403478 41403611 -135570529 - MIR SINE MIR -117 145 6 236 250 29 0 chrX 41403648 41403716 -135570424 - MLT1K LTR MaLR -7 581 512 2241 100 3 0 chrX 41404230 41404519 -135569621 + AluSx SINE Alu 1 290 -22 2377 72 0 0 chrX 41404527 41404817 -135569323 + AluSc SINE Alu 1 290 -19 272 149 0 21 chrX 41404989 41405036 -135569104 - MER5A DNA MER1_type 0 189 144 3142 163 44 36 chrX 41405038 41405159 -135568981 + MER67B LTR ERV1 1 120 -541 2139 121 3 3 chrX 41405159 41405464 -135568676 - AluSx SINE Alu -7 305 1 3142 163 44 36 chrX 41405464 41405549 -135568591 + MER67B LTR ERV1 120 203 -458 2185 98 0 7 chrX 41405549 41405879 -135568261 - AluSx SINE Alu 0 328 1 3142 163 44 36 chrX 41405879 41406304 -135567836 + MER67B LTR ERV1 203 639 -22 716 166 29 14 chrX 41406307 41406446 -135567694 - MER5A DNA MER1_type -48 141 1 2313 97 0 26 chrX 41406450 41406759 -135567381 + AluSx SINE Alu 1 301 -11 685 145 197 8 chrX 41407294 41407411 -135566729 + AluJb SINE Alu 112 250 -62 2206 89 44 0 chrX 41408468 41408761 -135565379 - AluSc SINE Alu -3 306 1 186 103 0 0 chrX 41409119 41409148 -135564992 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 247 210 0 86 chrX 41409366 41409447 -135564693 + C-rich Low_complexity Low_complexity 2 75 0 471 312 145 50 chrX 41409621 41410227 -135563913 + L1M2 LINE L1 397 1060 -5789 233 242 11 0 chrX 41410297 41410388 -135563752 + (CCTA)n Simple_repeat Simple_repeat 3 94 0 194 420 0 8 chrX 41411029 41411160 -135562980 - L2 LINE L2 -218 3054 2925 818 249 69 29 chrX 41411858 41412103 -135562037 - MIR SINE MIR 0 262 8 245 339 87 8 chrX 41412199 41412326 -135561814 - L2 LINE L2 -2 3311 3175 332 224 155 17 chrX 41413819 41413935 -135560205 - MER113 DNA MER1_type? -383 138 7 360 317 66 6 chrX 41414070 41414253 -135559887 - MIR SINE MIR -3 259 66 1166 326 159 22 chrX 41414521 41415690 -135558450 + L2 LINE L2 1611 2939 -375 228 211 96 0 chrX 41416205 41416257 -135557883 - MIR SINE MIR -69 193 137 2322 113 0 0 chrX 41416287 41416588 -135557552 - AluSx SINE Alu -11 301 1 267 339 64 9 chrX 41416620 41416729 -135557411 - MIR SINE MIR -128 134 20 888 256 130 4 chrX 41416814 41417044 -135557096 + MIR SINE MIR 4 262 0 1053 122 0 30 chrX 41417064 41417228 -135556912 + AluJb SINE Alu 135 293 -19 294 246 15 15 chrX 41417380 41417445 -135556695 - L2 LINE L2 -5 3267 3203 651 265 76 9 chrX 41417450 41417673 -135556467 - L2 LINE L2 0 3313 3076 199 160 0 160 chrX 41417655 41417730 -135556410 - L2 LINE L2 -71 3201 3139 * 292 247 0 26 chrX 41417896 41417973 -135556167 + Charlie8 DNA MER1_type 1 75 -2342 4658 229 124 38 chrX 41418142 41418346 -135555794 + Charlie8 DNA MER1_type 61 246 -2171 2437 175 50 63 chrX 41418346 41418945 -135555195 + MLT1E LTR MaLR 3 593 0 4658 229 124 38 chrX 41418945 41419191 -135554949 + Charlie8 DNA MER1_type 246 470 -1947 2497 54 3 0 chrX 41419191 41419485 -135554655 + AluSp SINE Alu 1 295 -18 4658 229 124 38 chrX 41419485 41419875 -135554265 + Charlie8 DNA MER1_type 470 825 -1592 872 163 20 56 chrX 41419875 41420071 -135554069 + MER5A DNA MER1_type 1 189 0 4658 229 124 38 chrX 41420071 41421112 -135553028 + Charlie8 DNA MER1_type 825 2105 -312 1614 144 44 54 chrX 41421319 41421617 -135552523 - AluJo SINE Alu -17 295 1 227 240 93 0 chrX 41421621 41421696 -135552444 + Charlie8 DNA MER1_type 2320 2401 -16 204 138 0 0 chrX 41422044 41422073 -135552067 - MIR SINE MIR -115 147 119 2254 85 17 3 chrX 41422306 41422600 -135551540 + AluSq SINE Alu 1 298 -15 187 292 0 0 chrX 41423236 41423284 -135550856 - L2 LINE L2 -9 3263 3216 1624 158 27 37 chrX 41423430 41423727 -135550413 - AluJb SINE Alu -18 294 1 471 261 84 74 chrX 41423731 41423934 -135550206 + MIR SINE MIR 20 224 -38 367 209 52 43 chrX 41423950 41424065 -135550075 + L2 LINE L2 3189 3304 -9 435 202 37 55 chrX 41424076 41424185 -135549955 - L2 LINE L2 -20 3293 3187 1713 184 21 0 chrX 41424304 41424592 -135549548 + AluJb SINE Alu 1 294 -18 2339 89 0 10 chrX 41424750 41425054 -135549086 - AluSg SINE Alu -9 301 1 182 200 0 22 chrX 41425200 41425245 -135548895 + L2 LINE L2 3267 3310 -3 413 257 35 26 chrX 41425584 41425697 -135548443 + MER5A DNA MER1_type 13 126 -63 1417 247 64 59 chrX 41426053 41426628 -135547512 - L1MC4a LINE L1 -1889 5919 5342 2244 125 0 0 chrX 41426932 41427244 -135546896 - AluSx SINE Alu 0 312 1 244 230 40 14 chrX 41427268 41427342 -135546798 - L1P LINE L1 -1170 4976 4901 671 223 82 31 chrX 41427374 41427692 -135546448 + L1MC5 LINE L1 7452 7785 -176 * 5060 112 12 9 chrX 41427678 41428488 -135545652 + L1MB2 LINE L1 5357 6169 -2 2342 82 3 0 chrX 41428507 41428800 -135545340 + AluSx SINE Alu 1 294 -18 276 30 0 0 chrX 41428821 41428854 -135545286 + (CA)n Simple_repeat Simple_repeat 2 34 0 4042 166 26 5 chrX 41429060 41429841 -135544299 - L1MB7 LINE L1 -19 6165 5369 513 231 119 25 chrX 41429845 41430005 -135544135 + MIR SINE MIR 71 245 -17 374 259 107 9 chrX 41430603 41430715 -135543425 + MIR3 SINE MIR 36 158 -50 273 314 18 83 chrX 41430717 41431186 -135542954 - MER5B DNA MER1_type 0 178 21 288 304 6 95 chrX 41430740 41430807 -135543333 + MER5A DNA MER1_type 35 106 -83 2212 123 0 0 chrX 41430807 41431108 -135543032 + AluSx SINE Alu 1 301 -11 288 304 6 95 chrX 41431108 41431208 -135542932 + MER5A DNA MER1_type 106 187 -2 424 309 70 29 chrX 41431333 41431536 -135542604 + MIR SINE MIR 44 250 -12 452 186 307 21 chrX 41431875 41432015 -135542125 + MIR SINE MIR 25 204 -58 391 268 80 58 chrX 41432242 41432380 -135541760 + MIR SINE MIR 6 146 -62 894 117 15 44 chrX 41432836 41432973 -135541167 + FLAM_C SINE Alu 1 133 0 2316 110 0 0 chrX 41433951 41434252 -135539888 - AluSx SINE Alu -11 301 1 424 265 123 37 chrX 41434435 41434597 -135539543 + MIR SINE MIR 87 262 0 494 296 82 29 chrX 41434605 41434811 -135539329 + MIR SINE MIR 2 218 -44 1668 124 24 8 chrX 41484882 41485132 -135489008 + AluSx SINE Alu 59 312 0 2908 126 56 0 chrX 41485145 41485489 -135488651 - L1PB4 LINE L1 -4 6152 5776 288 0 0 0 chrX 41485489 41485521 -135488619 + (TG)n Simple_repeat Simple_repeat 2 33 0 2908 126 56 0 chrX 41485521 41485620 -135488520 - L1PB4 LINE L1 -380 5776 5684 2478 58 13 26 chrX 41485621 41485931 -135488209 - AluSp SINE Alu -7 306 1 5539 176 20 32 chrX 41485954 41486093 -135488047 - L1MB7 LINE L1 -897 5249 5110 2308 80 7 0 chrX 41486093 41486381 -135487759 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 41486381 41486515 -135487625 - L1MB7 LINE L1 -1036 5110 4976 2367 93 0 13 chrX 41486515 41486690 -135487450 - AluSp SINE Alu -5 308 137 2580 71 0 0 chrX 41486690 41486999 -135487141 - AluY SINE Alu -2 309 1 2367 93 0 13 chrX 41486999 41487135 -135487005 - AluSp SINE Alu -176 137 1 2156 121 3 0 chrX 41487135 41487424 -135486716 - AluSx SINE Alu -22 290 1 5539 176 20 32 chrX 41487424 41488323 -135485817 - L1MB7 LINE L1 -1168 4978 4090 1740 139 20 57 chrX 41488329 41488485 -135485655 - AluJo SINE Alu -22 290 149 2262 98 0 0 chrX 41488485 41488780 -135485360 - AluSx SINE Alu -17 295 1 1740 139 20 57 chrX 41488780 41488924 -135485216 - AluJo SINE Alu -163 149 1 236 211 76 108 chrX 41488949 41489134 -135485006 - L1MC4 LINE L1 0 8042 7864 425 269 65 40 chrX 41489156 41489270 -135484870 - L1M4 LINE L1 -979 5167 5057 2110 79 101 0 chrX 41489270 41489547 -135484593 + AluY SINE Alu 1 305 -6 425 269 65 40 chrX 41489547 41489707 -135484433 - L1M4 LINE L1 -1089 5057 4886 1026 57 16 0 chrX 41489732 41489856 -135484284 - AluSg/x SINE Alu -20 290 165 283 91 36 36 chrX 41489856 41489911 -135484229 - MSTC-int LTR MaLR -1679 56 2 1969 130 26 10 chrX 41489913 41490220 -135483920 - AluJb SINE Alu 0 312 1 2138 114 157 24 chrX 41490220 41490596 -135483544 - MSTC LTR MaLR -2 426 1 2318 75 14 17 chrX 41490616 41490909 -135483231 - AluSc SINE Alu -17 292 1 626 169 25 157 chrX 41490909 41491151 -135482989 - L1M4 LINE L1 -1483 4663 4454 2394 87 0 26 chrX 41492416 41492727 -135481413 + AluSx SINE Alu 1 303 -9 15188 60 12 3 chrX 41492728 41494888 -135479252 + L1P2 LINE L1 3419 5589 -565 2201 128 0 0 chrX 41494978 41495282 -135478858 - AluSx SINE Alu -3 309 6 2219 105 0 7 chrX 41495418 41495712 -135478428 - AluSx SINE Alu -20 292 1 196 253 105 11 chrX 41495852 41495947 -135478193 - MIR SINE MIR -112 150 47 709 273 72 44 chrX 41496092 41496521 -135477619 + L1M4 LINE L1 4405 4845 -1301 2316 68 17 14 chrX 41496539 41496833 -135477307 + AluSx SINE Alu 1 295 -17 2138 114 157 24 chrX 41496853 41497229 -135476911 + MSTC LTR MaLR 1 426 -2 1980 129 26 7 chrX 41497229 41497531 -135476609 + AluJb SINE Alu 1 308 -4 4560 251 47 36 chrX 41497531 41498852 -135475288 + MSTC-int LTR MaLR 6 1340 -311 1525 145 64 57 chrX 41498879 41499034 -135475106 - AluJo SINE Alu -7 305 153 234 62 0 0 chrX 41499034 41499066 -135475074 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2281 75 0 7 chrX 41499066 41499348 -135474792 - AluY SINE Alu -31 280 1 1525 145 64 57 chrX 41499348 41499474 -135474666 - AluJo SINE Alu -158 154 21 296 100 20 20 chrX 41499484 41499534 -135474606 + MSTC-int LTR MaLR 1495 1544 -191 469 111 0 0 chrX 41499545 41499617 -135474523 + MSTC LTR MaLR 353 424 -4 2481 152 57 120 chrX 41499618 41500254 -135473886 + L1M4 LINE L1 4658 5333 -851 1682 180 7 10 chrX 41500254 41500543 -135473597 + AluJo SINE Alu 13 300 -12 2481 152 57 120 chrX 41500543 41500638 -135473502 + L1M4 LINE L1 5333 5432 -752 2195 87 11 0 chrX 41500638 41500939 -135473201 + AluSg SINE Alu 1 304 0 2481 152 57 120 chrX 41500939 41501216 -135472924 + L1M4 LINE L1 5432 5721 -463 2489 87 3 0 chrX 41501216 41501528 -135472612 + AluSq SINE Alu 1 313 0 2499 43 0 0 chrX 41501531 41501842 -135472298 + AluY SINE Alu 1 311 0 337 186 0 17 chrX 41502142 41502201 -135471939 - Alu SINE Alu -246 53 1 924 252 63 37 chrX 41502641 41503022 -135471118 + L1ME4a LINE L1 5524 5914 -207 2293 118 0 0 chrX 41503124 41503428 -135470712 - AluSx SINE Alu -8 304 1 2236 116 3 0 chrX 41503601 41503904 -135470236 + AluSq SINE Alu 1 304 -9 1517 166 72 28 chrX 41503910 41504200 -135469940 + AluJb SINE Alu 1 303 -9 241 206 48 32 chrX 41504382 41504445 -135469695 - L2 LINE L2 0 3272 3209 976 137 18 96 chrX 41504462 41504635 -135469505 - AluJb SINE Alu 0 309 157 2384 73 0 26 chrX 41504635 41504938 -135469202 - AluSg SINE Alu -15 295 1 976 137 18 96 chrX 41504938 41505009 -135469131 - AluJb SINE Alu -152 157 82 303 275 33 95 chrX 41505010 41505158 -135468982 - MIR SINE MIR -51 211 78 2552 64 0 22 chrX 41505158 41505472 -135468668 + AluY SINE Alu 1 307 -4 303 275 33 95 chrX 41505472 41505534 -135468606 - MIR SINE MIR -184 78 14 346 266 158 20 chrX 41506529 41506732 -135467408 - L1M4 LINE L1 -3442 2704 2474 204 125 0 0 chrX 41506988 41507020 -135467120 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 2028 118 0 4 chrX 41507023 41507294 -135466846 - AluSx SINE Alu -42 270 1 590 276 6 41 chrX 41507313 41507516 -135466624 - MIR SINE MIR -62 146 5 270 328 77 92 chrX 41507635 41508090 -135466050 + L2 LINE L2 2825 3272 0 675 214 7 7 chrX 41508658 41508798 -135465342 + MIR SINE MIR 2 141 -121 2263 150 27 77 chrX 41508804 41509047 -135465093 - MSTB1 LTR MaLR -4 428 215 2255 76 7 4 chrX 41509047 41509323 -135464817 + AluSq SINE Alu 23 299 -14 2263 150 27 77 chrX 41509323 41509520 -135464620 - MSTB1 LTR MaLR -217 215 10 221 192 0 39 chrX 41509530 41509582 -135464558 + MIR SINE MIR 175 224 -38 2304 89 10 0 chrX 41509587 41509880 -135464260 - AluSp SINE Alu -17 296 1 21 36 0 0 chrX 41510336 41510364 -135463776 + AT_rich Low_complexity Low_complexity 1 28 0 666 149 0 90 chrX 41510436 41510503 -135463637 - MSTB1 LTR MaLR 0 432 381 2177 131 0 0 chrX 41510503 41510793 -135463347 - AluSx SINE Alu -22 290 1 666 149 0 90 chrX 41510793 41510859 -135463281 - MSTB1 LTR MaLR -51 381 311 227 292 0 0 chrX 41510859 41510924 -135463216 - L1ME LINE L1 -484 5637 5573 2373 112 0 6 chrX 41510937 41511251 -135462889 - AluSx SINE Alu 0 312 1 2041 94 0 0 chrX 41512235 41512491 -135461649 - AluSc SINE Alu -17 292 37 1053 197 0 49 chrX 41512694 41512778 -135461362 + MER58A DNA MER1_type 32 119 -2301 2376 106 0 3 chrX 41512778 41513089 -135461051 - AluSx SINE Alu -2 310 1 1053 197 0 49 chrX 41513089 41513207 -135460933 + MER58A DNA MER1_type 119 224 0 2266 95 3 0 chrX 41513960 41514255 -135459885 - AluSq SINE Alu -17 296 13 224 233 0 0 chrX 41514675 41514718 -135459422 + (CATA)n Simple_repeat Simple_repeat 4 46 0 1056 95 0 7 chrX 41514864 41515011 -135459129 - AluSp SINE Alu -166 147 2 1791 133 10 13 chrX 41515540 41515840 -135458300 + AluSx SINE Alu 1 299 -13 1569 151 48 7 chrX 41515924 41516080 -135458060 - AluJo SINE Alu -30 282 109 477 0 0 0 chrX 41516080 41516133 -135458007 + (TG)n Simple_repeat Simple_repeat 1 53 0 1569 151 48 7 chrX 41516133 41516247 -135457893 - AluJo SINE Alu -203 109 1 2080 117 3 7 chrX 41516431 41516731 -135457409 - AluSx SINE Alu -13 299 1 2190 111 0 0 chrX 41516858 41517156 -135456984 + AluSx SINE Alu 1 298 -14 241 180 80 0 chrX 41517200 41517250 -135456890 - L2 LINE L2 0 3272 3219 2136 98 0 16 chrX 41517361 41517666 -135456474 - AluSx SINE Alu -12 300 1 2087 127 0 6 chrX 41517763 41518077 -135456063 - AluSx SINE Alu 0 312 1 1795 174 0 13 chrX 41518363 41518679 -135455461 - AluJb SINE Alu 0 312 1 2147 101 10 10 chrX 41518682 41518990 -135455150 - AluSq SINE Alu -5 308 1 2240 78 7 0 chrX 41519758 41520051 -135454089 - AluSp SINE Alu -18 295 1 296 48 24 0 chrX 41520084 41520126 -135454014 + (TC)n Simple_repeat Simple_repeat 1 43 0 1512 151 21 35 chrX 41520126 41520278 -135453862 - AluJb SINE Alu -32 280 132 2085 69 4 7 chrX 41520278 41520554 -135453586 - AluY SINE Alu -1 310 36 1512 151 21 35 chrX 41520554 41520685 -135453455 - AluJb SINE Alu -180 132 1 203 328 16 0 chrX 41520842 41520906 -135453234 - MIR SINE MIR -1 261 197 2736 7 0 0 chrX 41521325 41521630 -135452510 + AluY SINE Alu 1 305 -6 492 301 0 57 chrX 41521802 41521880 -135452260 - MIR SINE MIR -42 220 139 1574 139 93 11 chrX 41521880 41522160 -135451980 - AluJb SINE Alu -9 303 1 492 301 0 57 chrX 41522160 41522310 -135451830 - MIR SINE MIR -123 139 5 193 329 41 27 chrX 41522316 41522389 -135451751 - MIR SINE MIR -182 80 7 1781 145 0 0 chrX 41522496 41522758 -135451382 - AluJo SINE Alu -48 264 3 636 206 35 21 chrX 41522766 41522907 -135451233 - MIR SINE MIR -10 252 110 1627 135 38 4 chrX 41523210 41523477 -135450663 - AluSx SINE Alu 0 312 37 2058 69 8 0 chrX 41523477 41523737 -135450403 - AluSq SINE Alu -51 262 1 2187 76 7 10 chrX 41523752 41524053 -135450087 - AluSg SINE Alu -10 300 1 796 217 31 12 chrX 41524205 41524366 -135449774 + MIR SINE MIR 24 187 -75 1658 158 0 0 chrX 41524395 41524655 -135449485 - AluJb SINE Alu -13 299 40 187 179 45 0 chrX 41524656 41524696 -135449444 + MIR SINE MIR 116 157 -105 2224 69 10 0 chrX 41524865 41525153 -135448987 + AluSp SINE Alu 12 302 -11 556 294 94 5 chrX 41525234 41525435 -135448705 + MIR SINE MIR 2 220 -42 1867 150 0 0 chrX 41525444 41525738 -135448402 + AluJb SINE Alu 1 294 -18 1974 124 3 7 chrX 41525838 41526136 -135448004 + AluSx SINE Alu 1 297 -15 29 0 0 0 chrX 41527135 41527164 -135446976 + AT_rich Low_complexity Low_complexity 1 29 0 578 143 8 0 chrX 41527368 41527487 -135446653 + (TG)n Simple_repeat Simple_repeat 1 120 0 210 171 0 0 chrX 41527541 41527582 -135446558 + (TATG)n Simple_repeat Simple_repeat 4 44 0 417 86 0 0 chrX 41527582 41527640 -135446500 + (CATA)n Simple_repeat Simple_repeat 2 59 0 543 69 0 0 chrX 41530725 41530797 -135443343 + (CTATT)n Simple_repeat Simple_repeat 4 75 0 317 330 105 60 chrX 41531401 41531734 -135442406 + L2 LINE L2 2281 2628 -686 279 259 200 0 chrX 41532239 41532324 -135441816 + L2 LINE L2 3170 3271 -1 478 260 167 23 chrX 41532829 41533043 -135441097 - MIR SINE MIR -13 249 12 251 256 0 39 chrX 41533382 41533460 -135440680 - MIR SINE MIR -12 250 176 520 178 119 17 chrX 41533492 41533610 -135440530 - MLT1I LTR MaLR 0 409 280 2235 85 3 0 chrX 41533659 41533954 -135440186 + AluSp SINE Alu 2 297 -16 2689 10 7 0 chrX 41533955 41534262 -135439878 + AluYa5 SINE Alu 1 309 -2 2051 88 3 29 chrX 41534288 41534595 -135439545 - AluSq SINE Alu -14 299 1 503 125 0 0 chrX 41534598 41534670 -135439470 + U3 snRNA snRNA 1 72 -145 495 289 75 11 chrX 41534703 41534890 -135439250 - MLT1I LTR MaLR -203 206 8 264 186 221 12 chrX 41535103 41535189 -135438951 + MIR SINE MIR 158 261 -1 1973 119 3 3 chrX 41535623 41535916 -135438224 - AluSx SINE Alu -15 297 5 495 251 76 76 chrX 41536173 41536240 -135437900 + MER5A DNA MER1_type 10 76 -113 2200 95 0 7 chrX 41536240 41536535 -135437605 + AluSx SINE Alu 1 293 -19 495 251 76 76 chrX 41536535 41536582 -135437558 + MER5A DNA MER1_type 76 122 -67 2428 67 0 0 chrX 41536582 41536882 -135437258 - AluY SINE Alu -11 300 1 495 251 76 76 chrX 41536882 41536937 -135437203 + MER5A DNA MER1_type 121 180 -9 1638 140 14 14 chrX 41536948 41537233 -135436907 + AluJo SINE Alu 11 295 -17 193 271 21 0 chrX 41537316 41537364 -135436776 + MER5B DNA MER1_type 1 49 -129 2098 123 0 0 chrX 41537430 41537732 -135436408 + AluSx SINE Alu 1 302 -10 2328 76 0 0 chrX 41537741 41538042 -135436098 + AluY SINE Alu 11 311 0 21 0 0 0 chrX 41538101 41538122 -135436018 + AT_rich Low_complexity Low_complexity 1 21 0 769 135 0 0 chrX 41538131 41538242 -135435898 - FLAM_C SINE Alu -20 123 13 1852 134 7 3 chrX 41538248 41538539 -135435601 - AluJb SINE Alu -16 296 5 748 83 37 0 chrX 41538604 41538713 -135435427 - L1PB1 LINE L1 0 6151 6039 2177 78 10 36 chrX 41538716 41538887 -135435253 - AluSq SINE Alu -14 299 138 2203 95 3 3 chrX 41538887 41539193 -135434947 - AluSx SINE Alu -6 306 1 2177 78 10 36 chrX 41539193 41539328 -135434812 - AluSq SINE Alu -175 138 1 546 225 150 0 chrX 41539340 41539513 -135434627 - L1MC/D LINE L1 -1991 5817 5619 277 146 0 0 chrX 41539513 41539554 -135434586 - MLT1L LTR MaLR 0 615 575 838 157 21 120 chrX 41539668 41539730 -135434410 + MER5A DNA MER1_type 18 85 -104 2073 106 3 22 chrX 41539730 41540042 -135434098 + AluSx SINE Alu 4 309 -3 838 157 21 120 chrX 41540042 41540170 -135433970 + MER5A DNA MER1_type 85 189 0 339 298 34 62 chrX 41540180 41540358 -135433782 - MLT1K LTR MaLR -230 358 186 187 68 91 0 chrX 41540517 41540561 -135433579 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 617 290 76 20 chrX 41540561 41540864 -135433276 - L1MC/D LINE L1 -2219 5589 5270 2313 106 0 0 chrX 41540876 41541188 -135432952 - AluSx SINE Alu 0 312 1 306 301 88 47 chrX 41541220 41541390 -135432750 - L1MC/D LINE L1 -888 5258 5096 2019 108 10 24 chrX 41541390 41541685 -135432455 + AluSx SINE Alu 1 291 -21 306 301 88 47 chrX 41541685 41541959 -135432181 - L1MC/D LINE L1 -1050 5096 4796 1148 115 0 0 chrX 41541963 41542128 -135432012 - AluSp SINE Alu -1 312 148 1491 104 0 0 chrX 41542128 41542330 -135431810 - AluSx SINE Alu -110 202 1 1171 132 0 0 chrX 41542384 41542558 -135431582 - AluJb SINE Alu -13 299 126 2342 77 3 0 chrX 41542559 41542858 -135431282 - AluSp SINE Alu -13 300 1 822 153 22 29 chrX 41542998 41543135 -135431005 + AluJo SINE Alu 2 137 -175 238 162 27 0 chrX 41543194 41543231 -135430909 + Alu SINE Alu 1 38 -264 1676 91 0 9 chrX 41543231 41543461 -135430679 - AluSq SINE Alu -85 228 1 796 222 132 31 chrX 41543619 41543907 -135430233 - L2 LINE L2 -71 3242 2926 747 283 88 59 chrX 41543910 41544386 -135429754 + L1MC4a LINE L1 4982 5443 -678 1936 142 3 0 chrX 41544386 41544696 -135429444 + AluSq SINE Alu 1 311 -2 747 283 88 59 chrX 41544696 41544806 -135429334 + L1MC4a LINE L1 5443 5548 -573 2342 59 0 0 chrX 41544806 41545096 -135429044 - AluY SINE Alu -7 304 15 747 283 88 59 chrX 41545096 41545317 -135428823 + L1MC4a LINE L1 5548 5757 -364 2219 88 0 0 chrX 41545317 41545611 -135428529 + AluSc SINE Alu 1 294 -15 747 283 88 59 chrX 41545611 41545676 -135428464 + L1MC4a LINE L1 5757 5819 -302 373 195 0 125 chrX 41545884 41545964 -135428176 - MER45 DNA AcHobo -2 1579 1519 2271 101 0 0 chrX 41545964 41546271 -135427869 + AluSx SINE Alu 1 307 -5 373 195 0 125 chrX 41546271 41546318 -135427822 - MER45 DNA AcHobo -62 1519 1468 2962 58 0 0 chrX 41546320 41546667 -135427473 + L1P LINE L1 7 353 -5793 * 3069 36 3 0 chrX 41546662 41547023 -135427117 + L1P LINE L1 3455 3816 -2330 2031 25 0 0 chrX 41547023 41547248 -135426892 + L1PA4 LINE L1 5917 6152 -3 1785 118 3 46 chrX 41547272 41547576 -135426564 + AluSx SINE Alu 1 291 -21 737 133 172 0 chrX 41547581 41547686 -135426454 - MER45R DNA AcHobo -107 1474 1388 2093 119 0 0 chrX 41547686 41547981 -135426159 - AluSx SINE Alu -16 296 2 737 133 172 0 chrX 41547981 41548078 -135426062 - MER45R DNA AcHobo -193 1388 1237 2190 86 0 3 chrX 41548078 41548369 -135425771 - AluSp SINE Alu -14 299 10 2336 66 7 10 chrX 41548381 41548686 -135425454 - AluSq SINE Alu -9 304 1 1282 143 0 36 chrX 41548693 41548917 -135425223 - AluJo SINE Alu -15 297 82 233 56 0 28 chrX 41548919 41548955 -135425185 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1466 178 7 25 chrX 41548955 41549241 -135424899 - AluJo SINE Alu -31 281 1 4013 184 60 8 chrX 41549241 41550012 -135424128 - MER45R DNA AcHobo -770 811 1 702 267 40 8 chrX 41550193 41550444 -135423696 + MIR SINE MIR 4 262 0 804 277 147 23 chrX 41551337 41551361 -135422779 + L2 LINE L2 2919 2939 -374 2353 74 0 0 chrX 41551361 41551657 -135422483 - AluY SINE Alu -15 296 1 804 277 147 23 chrX 41551657 41551979 -135422161 + L2 LINE L2 2939 3308 -5 520 296 57 0 chrX 41551983 41552142 -135421998 + L2 LINE L2 3146 3313 0 194 363 97 17 chrX 41552144 41552433 -135421707 + L2 LINE L2 2316 2627 -687 830 216 196 4 chrX 41552450 41552695 -135421445 + MER69 DNA AcHobo 17 308 -918 812 107 25 16 chrX 41552724 41552846 -135421294 - AluJb SINE Alu -189 123 1 246 216 148 23 chrX 41552850 41552938 -135421202 + MER69 DNA AcHobo 304 402 -824 * 384 122 47 131 chrX 41552936 41552968 -135421172 + MER69 DNA AcHobo 2422 2455 -71 2092 105 0 0 chrX 41552968 41553263 -135420877 - AluSg SINE Alu -15 295 1 384 122 47 131 chrX 41553263 41553337 -135420803 + MER69 DNA AcHobo 2455 2519 -7 1332 161 104 7 chrX 41553341 41553620 -135420520 + AluJo SINE Alu 7 312 0 186 167 0 0 chrX 41554324 41554360 -135419780 + CT-rich Low_complexity Low_complexity 2 37 0 2198 91 13 0 chrX 41557246 41557555 -135416585 - AluSp SINE Alu 0 313 1 315 340 9 0 chrX 41557635 41557741 -135416399 + MIR SINE MIR 37 143 -65 2204 101 0 16 chrX 41558161 41558477 -135415663 - AluSx SINE Alu 0 312 2 203 316 74 21 chrX 41558584 41558679 -135415461 - MIR SINE MIR -5 257 158 355 344 97 32 chrX 41558752 41558999 -135415141 + L2 LINE L2 2715 2977 -337 369 245 75 9 chrX 41559138 41559244 -135414896 + L2 LINE L2 3201 3313 0 259 249 141 65 chrX 41559484 41559866 -135414274 - L1ME4a LINE L1 -2 6119 5709 2235 99 3 0 chrX 41560419 41560721 -135413419 - AluSg SINE Alu -7 303 1 182 246 217 0 chrX 41560802 41560871 -135413269 - MIR SINE MIR -82 180 97 520 243 27 9 chrX 41561001 41561112 -135413028 - MER5A DNA MER1_type 0 189 77 405 230 310 0 chrX 41561344 41561457 -135412683 + MER5A DNA MER1_type 42 189 0 190 250 238 36 chrX 41561615 41561699 -135412441 + MIR SINE MIR 28 128 -134 1165 225 109 50 chrX 41561803 41562045 -135412095 - L1M4 LINE L1 -2631 3515 3289 1922 132 3 10 chrX 41562045 41562341 -135411799 + AluJb SINE Alu 17 310 -2 1165 225 109 50 chrX 41562341 41562554 -135411586 - L1M4 LINE L1 -2857 3289 3019 2249 79 30 3 chrX 41562554 41562859 -135411281 - AluSq SINE Alu 0 313 1 1165 225 109 50 chrX 41562859 41562961 -135411179 - L1M4 LINE L1 -3127 3019 2924 435 128 0 0 chrX 41562975 41563053 -135411087 - Alu SINE Alu -1 309 232 1822 115 4 0 chrX 41763053 41763305 -135210835 + AluSx SINE Alu 59 311 -1 1064 163 12 0 chrX 41763306 41763478 -135210662 + AluSg/x SINE Alu 120 293 -19 2540 60 3 3 chrX 41763481 41763780 -135210360 + AluY SINE Alu 1 299 -12 25 31 0 0 chrX 41763817 41763849 -135210291 + AT_rich Low_complexity Low_complexity 1 32 0 2176 103 0 4 chrX 41763849 41764130 -135210010 + AluSx SINE Alu 1 280 -32 252 0 0 0 chrX 41764130 41764158 -135209982 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 703 211 160 9 chrX 41764314 41764527 -135209613 - MIR SINE MIR -11 251 7 2303 98 27 0 chrX 41765042 41765337 -135208803 + AluSx SINE Alu 1 303 -9 239 315 16 8 chrX 41765452 41765579 -135208561 + GA-rich Low_complexity Low_complexity 2 129 0 2489 80 3 0 chrX 41765650 41765950 -135208190 + AluSx SINE Alu 1 301 -11 283 336 9 26 chrX 41766051 41766164 -135207976 + L2 LINE L2 3146 3256 -16 * 487 279 56 0 chrX 41766149 41766310 -135207830 - MIR SINE MIR -12 250 81 251 280 38 89 chrX 41766537 41766694 -135207446 - L2 LINE L2 -94 3178 3030 506 165 0 0 chrX 41766711 41766790 -135207350 + MER69 DNA AcHobo 1 79 -2447 * 978 196 75 8 chrX 41766787 41767022 -135207118 + MER69 DNA AcHobo 1937 2193 -333 2136 119 7 0 chrX 41767022 41767317 -135206823 - AluJo SINE Alu -15 297 1 978 196 75 8 chrX 41767317 41767347 -135206793 + MER69 DNA AcHobo 2193 2220 -306 291 306 200 44 chrX 41767355 41767555 -135206585 + L2 LINE L2 1399 1567 -1747 267 31 0 0 chrX 41767555 41767587 -135206553 + (TC)n Simple_repeat Simple_repeat 2 33 0 291 306 200 44 chrX 41767587 41767746 -135206394 + L2 LINE L2 1567 1814 -1500 35 63 0 0 chrX 41767821 41767884 -135206256 + AT_rich Low_complexity Low_complexity 1 63 0 468 244 150 53 chrX 41768098 41768261 -135205879 - L1ME3A LINE L1 -219 5951 5751 2232 92 14 3 chrX 41768261 41768553 -135205587 + AluSq SINE Alu 1 295 -18 468 244 150 53 chrX 41768553 41768655 -135205485 - L1ME3A LINE L1 -419 5751 5660 2502 110 116 13 chrX 41768670 41769143 -135204997 - Charlie1b DNA MER1_type -1 522 1 571 182 59 10 chrX 41769143 41769289 -135204851 - L1ME3A LINE L1 -506 5656 5506 1631 267 161 25 chrX 41769291 41769443 -135204697 + L2 LINE L2 1848 1978 -1336 2779 39 0 0 chrX 41769443 41769750 -135204390 - AluY SINE Alu -2 309 3 1631 267 161 25 chrX 41769750 41770391 -135203749 + L2 LINE L2 1978 2749 -565 2315 103 7 0 chrX 41770541 41770843 -135203297 - AluSx SINE Alu -8 304 1 874 281 57 72 chrX 41770914 41771490 -135202650 + L2 LINE L2 2742 3307 -6 * 1694 298 189 54 chrX 41771487 41771759 -135202381 - L2 LINE L2 -250 3022 2788 189 0 0 0 chrX 41771759 41771780 -135202360 + (TA)n Simple_repeat Simple_repeat 2 22 0 2329 84 20 0 chrX 41771780 41772078 -135202062 - AluSx SINE Alu -8 304 1 1694 298 189 54 chrX 41772078 41772600 -135201540 - L2 LINE L2 -484 2788 2338 1890 112 0 0 chrX 41772600 41772850 -135201290 + AluSx SINE Alu 56 305 -7 1694 298 189 54 chrX 41772850 41773079 -135201061 - L2 LINE L2 -934 2338 2141 2035 89 79 7 chrX 41773079 41773359 -135200781 + AluSg SINE Alu 1 300 -10 1694 298 189 54 chrX 41773359 41774069 -135200071 - L2 LINE L2 -1131 2141 994 243 88 0 0 chrX 41774603 41774637 -135199503 + (TCCCC)n Simple_repeat Simple_repeat 3 36 0 37 52 0 0 chrX 41774857 41774915 -135199225 + GC_rich Low_complexity Low_complexity 1 58 0 201 175 0 0 chrX 41774945 41774985 -135199155 + (CTG)n Simple_repeat Simple_repeat 1 40 0 959 213 54 5 chrX 41775838 41776059 -135198081 - MIR SINE MIR -11 251 20 182 345 42 81 chrX 41776074 41776358 -135197782 - L2 LINE L2 -2075 1239 967 1343 268 48 22 chrX 41776923 41777337 -135196803 + L2 LINE L2 2886 3310 -3 180 219 0 0 chrX 41777357 41777398 -135196742 + L2 LINE L2 3271 3311 -2 362 250 80 30 chrX 41777706 41777806 -135196334 + MIR SINE MIR 39 143 -65 24 32 0 0 chrX 41777874 41777905 -135196235 + AT_rich Low_complexity Low_complexity 1 31 0 385 294 65 13 chrX 41778803 41778956 -135195184 + MER5B DNA MER1_type 17 177 -1 834 303 62 26 chrX 41779503 41779972 -135194168 - L2 LINE L2 -541 2773 2288 533 176 117 88 chrX 41779997 41780236 -135193904 - L1ME4a LINE L1 -100 6021 5776 6144 87 19 20 chrX 41780236 41781000 -135193140 - L1PA15 LINE L1 -3 6162 5399 2092 104 48 10 chrX 41781000 41781289 -135192851 - AluSx SINE Alu -12 300 1 6144 87 19 20 chrX 41781289 41781970 -135192170 - L1PA15 LINE L1 -766 5399 4719 2465 65 0 0 chrX 41781970 41782285 -135191855 - AluY SINE Alu 0 311 1 2505 68 0 19 chrX 41782289 41782598 -135191542 - AluSg SINE Alu 0 310 8 2300 94 0 0 chrX 41782603 41782921 -135191219 - AluSx SINE Alu 0 318 1 6144 87 19 20 chrX 41782921 41783142 -135190998 - L1PA15 LINE L1 -1453 4712 4488 262 276 53 0 chrX 41783144 41783220 -135190920 - L2 LINE L2 -1013 2301 2222 985 144 0 0 chrX 41783419 41783558 -135190582 + AluSg/x SINE Alu 135 273 -37 2234 106 13 19 chrX 41783570 41783882 -135190258 - AluSg SINE Alu 0 310 1 2174 136 0 10 chrX 41783908 41784043 -135190097 + AluSx SINE Alu 1 136 -176 2476 68 3 0 chrX 41784043 41784335 -135189805 + AluSc SINE Alu 1 293 -16 2174 136 0 10 chrX 41784335 41784509 -135189631 + AluSx SINE Alu 136 307 -5 2568 62 0 0 chrX 41784517 41784808 -135189332 + AluSc SINE Alu 2 292 -17 1922 164 0 7 chrX 41784818 41785123 -135189017 + AluJo SINE Alu 1 303 -9 206 303 53 0 chrX 41785964 41786040 -135188100 + MIR SINE MIR 60 139 -69 834 271 159 17 chrX 41786136 41786487 -135187653 - L2 LINE L2 0 3272 2872 301 362 73 15 chrX 41786648 41786977 -135187163 - L2 LINE L2 -709 2605 2258 230 293 12 37 chrX 41787185 41787267 -135186873 + C-rich Low_complexity Low_complexity 2 81 0 564 246 40 35 chrX 41787466 41787685 -135186455 + MIR SINE MIR 26 250 -12 237 261 51 14 chrX 41787763 41787901 -135186239 + (TCTCTG)n Simple_repeat Simple_repeat 2 144 0 321 155 0 0 chrX 41788316 41788374 -135185766 + (TG)n Simple_repeat Simple_repeat 1 58 0 601 238 153 16 chrX 41788992 41789181 -135184959 + MIR SINE MIR 29 243 -19 621 233 5 85 chrX 41789595 41789637 -135184503 + Charlie8 DNA MER1_type 103 147 -194 2366 109 0 0 chrX 41789637 41789940 -135184200 + AluSx SINE Alu 1 303 -9 621 233 5 85 chrX 41789940 41790086 -135184054 + Charlie8 DNA MER1_type 147 276 -65 288 229 14 0 chrX 41791134 41791204 -135182936 - MIR SINE MIR -72 136 66 458 305 7 14 chrX 41791939 41792080 -135182060 - MIR SINE MIR -105 157 18 427 149 33 159 chrX 41792393 41792462 -135181678 + MER53 DNA DNA 3 79 -110 2291 97 0 0 chrX 41792462 41792751 -135181389 - AluSg SINE Alu -21 289 1 427 149 33 159 chrX 41792751 41792860 -135181280 + MER53 DNA DNA 79 152 -37 2327 102 3 0 chrX 41792860 41793155 -135180985 + AluSq SINE Alu 1 296 -17 427 149 33 159 chrX 41793155 41793189 -135180951 + MER53 DNA DNA 152 189 0 794 181 0 0 chrX 41793617 41793750 -135180390 + FLAM_A SINE Alu 1 133 0 1757 183 7 0 chrX 41793941 41794231 -135179909 + AluJo SINE Alu 5 296 -16 2343 87 10 0 chrX 41794477 41794803 -135179337 - AluSp SINE Alu 0 313 1 279 247 14 0 chrX 41795280 41795353 -135178787 + MIR SINE MIR 72 145 -63 1096 215 57 79 chrX 41796459 41796599 -135177541 + MER2 DNA MER2_type 1 143 -202 2209 98 17 0 chrX 41796599 41796886 -135177254 - AluSx SINE Alu -20 292 1 1096 215 57 79 chrX 41796886 41797098 -135177042 + MER2 DNA MER2_type 143 345 0 1984 172 0 0 chrX 41798285 41798593 -135175547 - AluJb SINE Alu -4 308 1 1776 90 0 0 chrX 41799562 41799774 -135174366 - AluSc SINE Alu -11 298 87 243 103 0 0 chrX 41800488 41800527 -135173613 + (GGA)n Simple_repeat Simple_repeat 1 39 0 209 139 14 178 chrX 41800679 41800764 -135173376 + MIR SINE MIR 74 139 -69 519 279 67 22 chrX 41801276 41801455 -135172685 - MIR SINE MIR -74 188 2 420 224 103 9 chrX 41802137 41802253 -135171887 + L2 LINE L2 3187 3313 0 2258 119 3 3 chrX 41802933 41803243 -135170897 + AluSx SINE Alu 1 310 -2 351 305 42 80 chrX 41803247 41803318 -135170822 - L2 LINE L2 -85 3187 3115 930 196 44 78 chrX 41803318 41803540 -135170600 + MIR SINE MIR 1 214 -48 2527 72 7 0 chrX 41803540 41803846 -135170294 + AluY SINE Alu 1 308 -3 930 196 44 78 chrX 41803846 41803894 -135170246 + MIR SINE MIR 214 262 0 351 305 42 80 chrX 41803894 41804035 -135170105 - L2 LINE L2 -157 3115 2983 215 242 44 88 chrX 41804052 41804143 -135169997 + L2 LINE L2 2655 2741 -573 188 340 146 0 chrX 41804351 41804454 -135169686 + L2 LINE L2 3137 3254 -18 198 0 0 0 chrX 41805973 41805995 -135168145 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 578 204 32 38 chrX 41805997 41806154 -135167986 - L2 LINE L2 -9 3304 3149 2507 72 3 3 chrX 41806156 41806461 -135167679 + AluSx SINE Alu 1 305 -7 1066 134 0 0 chrX 41806462 41806636 -135167504 + AluSg/x SINE Alu 136 309 0 1190 238 243 60 chrX 41806641 41807526 -135166614 - L2 LINE L2 -160 3153 2431 2334 110 0 0 chrX 41807526 41807826 -135166314 + AluSg SINE Alu 1 300 -10 1190 238 243 60 chrX 41807826 41807897 -135166243 - L2 LINE L2 -882 2431 2374 2432 88 3 0 chrX 41807897 41808202 -135165938 + AluSx SINE Alu 1 306 -6 1190 238 243 60 chrX 41808202 41808231 -135165909 - L2 LINE L2 -939 2374 1963 2498 84 0 0 chrX 41808958 41809268 -135164872 - AluSg SINE Alu 0 310 1 906 209 16 5 chrX 41809545 41809736 -135164404 + MIR SINE MIR 70 262 0 2172 104 0 3 chrX 41809798 41810128 -135164012 - AluSc SINE Alu 0 329 1 2286 107 3 0 chrX 41810130 41810428 -135163712 - AluSc SINE Alu -10 299 1 189 26 51 26 chrX 41810429 41810468 -135163672 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1093 52 0 37 chrX 41810468 41810604 -135163536 - AluYb8 SINE Alu -187 131 1 467 45 15 0 chrX 41810617 41810683 -135163457 - MER41B LTR ERV1 -88 547 481 445 283 81 7 chrX 41811533 41811711 -135162429 + MIR SINE MIR 16 208 -54 329 259 60 97 chrX 41811741 41811957 -135162183 - L2 LINE L2 -95 3177 2970 2356 90 27 0 chrX 41812023 41812322 -135161818 - AluSx SINE Alu -5 307 1 261 279 71 29 chrX 41812328 41812468 -135161672 - L2 LINE L2 -508 2806 2661 719 257 140 9 chrX 41812765 41813100 -135161040 - L1ME4a LINE L1 0 6121 5743 227 326 125 14 chrX 41813135 41813279 -135160861 - L1ME4a LINE L1 -359 5762 5603 532 154 27 0 chrX 41813298 41813408 -135160732 - L1ME4a LINE L1 -3 6118 6006 2518 82 0 0 chrX 41813658 41813961 -135160179 + AluSg SINE Alu 1 303 -7 311 237 123 0 chrX 41814526 41814640 -135159500 - MIR SINE MIR -64 198 71 381 252 98 66 chrX 41815510 41815796 -135158344 + L1MC4 LINE L1 7624 7918 -124 1874 146 14 52 chrX 41815828 41815919 -135158221 + MER7A DNA MER2_type 1 94 -2944 2350 107 13 0 chrX 41815919 41816218 -135157922 - AluSx SINE Alu -6 306 4 1874 146 14 52 chrX 41816218 41816488 -135157652 + MER7A DNA MER2_type 94 346 0 315 269 57 71 chrX 41816488 41816621 -135157519 + L1MC4 LINE L1 7908 8040 -2 621 256 7 151 chrX 41816703 41816885 -135157255 - MIR SINE MIR 0 262 140 979 106 0 0 chrX 41816885 41817017 -135157123 + FLAM_C SINE Alu 2 133 0 621 256 7 151 chrX 41817017 41817139 -135157001 - MIR SINE MIR -122 140 2 867 169 7 7 chrX 41817663 41817811 -135156329 - MER5B DNA MER1_type -3 175 28 2378 99 0 6 chrX 41817811 41818123 -135156017 - AluSg SINE Alu 0 310 1 286 267 0 0 chrX 41818194 41818280 -135155860 - L1MC4 LINE L1 -139 7903 7818 2251 128 0 0 chrX 41818295 41818599 -135155541 - AluJo SINE Alu -3 309 6 31 36 0 18 chrX 41818648 41818683 -135155457 + AT_rich Low_complexity Low_complexity 1 36 -19 2088 81 49 14 chrX 41818683 41818968 -135155172 - AluSq SINE Alu -18 295 1 31 36 0 18 chrX 41818968 41818988 -135155152 + AT_rich Low_complexity Low_complexity 36 55 0 2390 95 0 0 chrX 41819004 41819300 -135154840 + AluSx SINE Alu 1 296 -16 385 279 90 0 chrX 41819361 41819483 -135154657 - MIR SINE MIR -6 256 124 2266 111 0 3 chrX 41819525 41819823 -135154317 - AluSx SINE Alu -15 297 1 428 298 156 37 chrX 41819907 41820125 -135154015 + L2 LINE L2 3028 3271 -1 365 274 62 9 chrX 41820113 41820226 -135153914 - MIR SINE MIR -131 131 13 * 311 140 40 0 chrX 41820444 41820494 -135153646 - MIR SINE MIR -110 152 101 374 333 17 0 chrX 41820623 41820740 -135153400 - MIR3 SINE MIR -54 154 36 379 223 66 58 chrX 41821095 41821216 -135152924 - MIR3 SINE MIR -76 132 11 504 262 63 0 chrX 41821959 41822085 -135152055 - MIR SINE MIR -72 190 57 2339 91 3 13 chrX 41822103 41822410 -135151730 + AluSp SINE Alu 1 304 -9 449 186 0 12 chrX 41822587 41822673 -135151467 - MIR SINE MIR -10 252 168 314 322 58 8 chrX 41822936 41823057 -135151083 + MIR SINE MIR 36 162 -100 2452 96 0 0 chrX 41823565 41823867 -135150273 + AluSx SINE Alu 1 302 -10 234 270 86 46 chrX 41824819 41824971 -135149169 + MIR3 SINE MIR 37 194 -14 275 241 131 36 chrX 41826204 41826288 -135147852 + MIR SINE MIR 25 117 -91 512 165 62 0 chrX 41827570 41827667 -135146473 + MIR SINE MIR 81 183 -79 240 260 14 41 chrX 41827849 41827922 -135146218 + MIR SINE MIR 60 130 -78 191 324 264 20 chrX 41827990 41828391 -135145749 + L2 LINE L2 2151 2649 -665 1061 157 156 0 chrX 41829261 41829540 -135144600 + MER33 DNA MER1_type 1 323 -1 402 274 13 43 chrX 41829542 41829680 -135144460 - MIR SINE MIR -65 143 27 189 281 169 22 chrX 41830428 41830517 -135143623 + MER5A DNA MER1_type 50 151 -38 2047 213 28 45 chrX 41830526 41830558 -135143582 + L1M4 LINE L1 2650 2681 -3465 1936 147 26 37 chrX 41830558 41830755 -135143385 - MER2 DNA MER2_type 0 344 151 1969 132 7 0 chrX 41830755 41831044 -135143096 - AluSg SINE Alu -8 302 12 1936 147 26 37 chrX 41831044 41831194 -135142946 - MER2 DNA MER2_type -193 151 1 2047 213 28 45 chrX 41831194 41831538 -135142602 + L1M4 LINE L1 2681 3030 -3116 1867 146 0 59 chrX 41831538 41831675 -135142465 + AluJb SINE Alu 1 144 -168 2330 103 0 0 chrX 41831675 41831977 -135142163 + AluSx SINE Alu 1 302 -10 1867 146 0 59 chrX 41831977 41831988 -135142152 + AluJb SINE Alu 144 154 -158 1942 132 33 0 chrX 41831988 41832284 -135141856 + AluSx SINE Alu 1 305 0 1867 146 0 59 chrX 41832284 41832456 -135141684 + AluJb SINE Alu 154 304 -8 2047 213 28 45 chrX 41832456 41832630 -135141510 + L1M4 LINE L1 3030 3206 -2940 2074 132 0 0 chrX 41832630 41832940 -135141200 - AluSx SINE Alu 0 312 3 1550 174 60 7 chrX 41832944 41833106 -135141034 - AluJo SINE Alu -16 296 111 582 28 0 0 chrX 41833106 41833178 -135140962 + (TG)n Simple_repeat Simple_repeat 2 73 0 1550 174 60 7 chrX 41833178 41833296 -135140844 - AluJo SINE Alu -201 111 1 2047 213 28 45 chrX 41833296 41833419 -135140721 + L1M4 LINE L1 3209 3319 -2827 968 166 10 25 chrX 41833417 41833616 -135140524 + L1MB8 LINE L1 5886 6081 -97 * 1158 90 11 43 chrX 41833616 41833804 -135140336 + MLT1B LTR MaLR 1 182 -208 1380 148 33 29 chrX 41833820 41834063 -135140077 + AluJo SINE Alu 59 302 -10 239 32 0 0 chrX 41834190 41834221 -135139919 + L1MB8 LINE L1 6095 6125 -53 313 214 19 0 chrX 41834245 41834348 -135139792 - MER69 DNA AcHobo -106 2420 2316 957 104 0 15 chrX 41834352 41834486 -135139654 - AluSq/x SINE Alu -180 132 1 1111 176 120 14 chrX 41834486 41834845 -135139295 - MER69 DNA AcHobo -193 2333 1937 419 200 0 0 chrX 41834841 41834921 -135139219 - MER69 DNA AcHobo -2446 80 1 * 363 266 4 167 chrX 41834928 41835180 -135138960 - L2 LINE L2 -157 3115 2905 289 211 40 13 chrX 41835486 41835562 -135138578 - Charlie4 DNA MER1_type -7 1954 1877 937 86 0 0 chrX 41835578 41835695 -135138445 + AluSg/x SINE Alu 180 296 -14 725 120 28 9 chrX 41835699 41835807 -135138333 - AluJb SINE Alu -189 123 14 514 116 21 0 chrX 41835810 41835905 -135138235 - Charlie4 DNA MER1_type -67 1894 1798 2024 117 20 17 chrX 41835951 41836249 -135137891 + AluSx SINE Alu 1 299 -13 2525 84 7 0 chrX 41836435 41836743 -135137397 + AluSg SINE Alu 1 310 0 1363 167 0 16 chrX 41837015 41837260 -135136880 + AluJb SINE Alu 54 294 -18 2422 98 0 0 chrX 41837555 41837862 -135136278 + AluSx SINE Alu 1 307 -5 1318 93 0 0 chrX 41837862 41838023 -135136117 + AluSg/x SINE Alu 132 292 -18 380 309 24 42 chrX 41838075 41838240 -135135900 + LTR16B LTR ERVL 1 162 -302 1516 151 13 8 chrX 41838266 41838504 -135135636 + AluJb SINE Alu 55 293 -19 2354 101 0 7 chrX 41838539 41838845 -135135295 - AluSc SINE Alu -5 304 1 277 189 19 142 chrX 41838852 41838880 -135135260 + MLT1J LTR MaLR 415 445 -66 1503 137 82 75 chrX 41838880 41839173 -135134967 + AluJb SINE Alu 1 295 -17 277 189 19 142 chrX 41839173 41839250 -135134890 + MLT1J LTR MaLR 445 507 -4 2261 93 0 4 chrX 41839331 41839640 -135134500 + AluSx SINE Alu 3 310 0 363 200 0 0 chrX 41840283 41840348 -135133792 + MER92B LTR ERV1 1 65 -571 2413 80 0 7 chrX 41840353 41840652 -135133488 + AluSx SINE Alu 1 297 -15 889 284 95 19 chrX 41840653 41840970 -135133170 - L2 LINE L2 -703 2611 2271 623 213 130 57 chrX 41841005 41841305 -135132835 - L2 LINE L2 -1303 2011 1690 2269 103 0 0 chrX 41841311 41841602 -135132538 + AluSx SINE Alu 1 291 -21 458 283 115 49 chrX 41841604 41841830 -135132310 - L2 LINE L2 -1997 1317 1077 1565 189 74 109 chrX 41841830 41842327 -135131813 - MLT1E LTR MaLR -2 591 112 414 0 0 0 chrX 41842327 41842373 -135131767 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 852 143 8 0 chrX 41842373 41842492 -135131648 - FLAM_C SINE Alu -23 120 1 545 228 8 16 chrX 41842492 41842619 -135131521 - MLT1E LTR MaLR -467 126 1 485 193 14 151 chrX 41842620 41842687 -135131453 - L2 LINE L2 -2234 1080 1005 1678 213 116 76 chrX 41842687 41843255 -135130885 - MLT1E LTR MaLR 0 593 3 485 193 14 151 chrX 41843255 41843324 -135130816 - L2 LINE L2 -2309 1005 981 2168 84 0 25 chrX 41843324 41843628 -135130512 + AluSc SINE Alu 2 298 0 485 193 14 151 chrX 41843628 41843707 -135130433 - L2 LINE L2 -2333 981 893 * 589 302 0 59 chrX 41843689 41843858 -135130282 - MER91A DNA MER1_type -34 162 4 341 331 41 8 chrX 41843899 41844020 -135130120 + MIR SINE MIR 60 184 -78 2298 73 3 14 chrX 41844039 41844360 -135129780 - AluSq SINE Alu 0 318 1 1143 127 0 6 chrX 41844594 41844751 -135129389 - AluJb SINE Alu -20 292 137 2084 107 7 27 chrX 41844799 41845099 -135129041 + AluSx SINE Alu 1 294 -18 288 297 0 18 chrX 41845197 41845308 -135128832 + LTR67 LTR ERVL 442 550 -7 1575 158 6 73 chrX 41845494 41845608 -135128532 + AluJb SINE Alu 11 131 -181 467 31 31 0 chrX 41845608 41845672 -135128468 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 1575 158 6 73 chrX 41845672 41845873 -135128267 + AluJb SINE Alu 131 305 -7 2300 110 0 3 chrX 41845881 41846191 -135127949 + AluSp SINE Alu 1 309 -4 2326 83 0 3 chrX 41846191 41846480 -135127660 - AluSx SINE Alu -24 288 1 2193 60 60 18 chrX 41847413 41847695 -135126445 - AluY SINE Alu -17 294 1 1193 116 17 12 chrX 41847778 41847950 -135126190 - AluSx SINE Alu -139 173 1 1260 151 82 167 chrX 41848104 41848328 -135125812 + MLT1C LTR MaLR 6 248 -219 2285 119 3 3 chrX 41848328 41848640 -135125500 + AluSx SINE Alu 1 312 0 1260 151 82 167 chrX 41848640 41848848 -135125292 + MLT1C LTR MaLR 248 396 -71 2325 84 13 13 chrX 41848848 41849156 -135124984 - AluSp SINE Alu -5 308 1 1260 151 82 167 chrX 41849156 41849200 -135124940 + MLT1C LTR MaLR 396 442 -25 1970 165 0 3 chrX 41849440 41849749 -135124391 + AluJb SINE Alu 2 309 -3 1741 127 12 50 chrX 41849782 41849872 -135124268 + L1MB2 LINE L1 5821 5913 -258 777 159 15 15 chrX 41849872 41850004 -135124136 + FLAM_C SINE Alu 2 133 0 1741 127 12 50 chrX 41850004 41850236 -135123904 + L1MB2 LINE L1 5913 6131 -40 297 79 0 0 chrX 41850236 41850274 -135123866 + LTR23 LTR ERV1 320 357 -80 341 88 0 0 chrX 41850293 41850350 -135123790 + L1MB3 LINE L1 6127 6183 0 713 276 207 17 chrX 41850365 41850803 -135123337 + L2 LINE L2 2791 3313 0 893 209 25 0 chrX 41851040 41851198 -135122942 - FRAM SINE Alu -4 162 1 1908 142 4 4 chrX 41851450 41851724 -135122416 + AluJb SINE Alu 6 279 -33 1050 62 34 17 chrX 41851738 41851915 -135122225 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2167 130 0 3 chrX 41852077 41852376 -135121764 - AluJb SINE Alu -14 298 1 247 217 183 26 chrX 41852398 41852509 -135121631 - MLT1L LTR MaLR -339 276 148 627 224 0 0 chrX 41852509 41852643 -135121497 - Charlie1 DNA MER1_type 0 2761 2628 1907 159 0 20 chrX 41852644 41852945 -135121195 + AluJb SINE Alu 1 295 -17 2886 106 12 0 chrX 41852945 41853369 -135120771 - L1PA16 LINE L1 -28 6138 5710 806 203 115 21 chrX 41853369 41853561 -135120579 - Charlie1 DNA MER1_type -2551 210 1 842 158 8 0 chrX 41853842 41853975 -135120165 + AluJo SINE Alu 1 134 -178 269 257 136 7 chrX 41854100 41854240 -135119900 + MER113 DNA MER1_type? 1 158 -363 191 157 0 57 chrX 41854933 41855003 -135119137 + A-rich Low_complexity Low_complexity 1 66 0 2440 87 3 10 chrX 41855156 41855291 -135118849 + AluSx SINE Alu 1 135 -177 2326 93 3 0 chrX 41855291 41855593 -135118547 + AluY SINE Alu 1 303 -8 2440 87 3 10 chrX 41855593 41855769 -135118371 + AluSx SINE Alu 135 310 -2 350 365 0 0 chrX 41856039 41856146 -135117994 - MIR SINE MIR -61 147 41 324 209 58 0 chrX 41856544 41856630 -135117510 + L2 LINE L2 2553 2643 -671 776 233 49 0 chrX 41856632 41856795 -135117345 + MER91A DNA MER1_type 1 171 -25 2442 80 3 26 chrX 41856801 41857114 -135117026 - AluSg SINE Alu -2 308 3 241 254 127 0 chrX 41857122 41857193 -135116947 + MER91A DNA MER1_type 88 167 -29 1461 249 55 86 chrX 41857224 41857358 -135116782 + L2 LINE L2 2638 2775 -538 2246 105 0 29 chrX 41857358 41857671 -135116469 + AluSx SINE Alu 1 304 -8 1461 249 55 86 chrX 41857671 41858233 -135115907 + L2 LINE L2 2775 3313 0 2433 78 0 0 chrX 41859033 41859326 -135114814 + AluSg SINE Alu 1 293 -17 2489 75 0 3 chrX 41859352 41859658 -135114482 + AluY SINE Alu 3 307 -4 1874 157 3 7 chrX 41859716 41860015 -135114125 - AluJb SINE Alu -14 298 1 627 199 23 131 chrX 41860117 41860293 -135113847 + MLT1E LTR MaLR 1 166 -427 250 235 44 0 chrX 41860267 41860335 -135113805 + MLT1E LTR MaLR 114 184 -409 * 862 158 57 6 chrX 41860359 41860517 -135113623 + MLT1E LTR MaLR 428 593 0 2481 104 0 0 chrX 41860521 41860830 -135113310 + AluSx SINE Alu 1 309 -3 349 247 11 11 chrX 41860903 41860996 -135113144 + MIR SINE MIR 140 232 -30 253 240 27 0 chrX 41861268 41861343 -135112797 - L1MB5 LINE L1 0 6174 6098 4391 143 26 30 chrX 41861351 41861519 -135112621 - L1MB5 LINE L1 -119 6055 5888 2592 57 0 0 chrX 41861519 41861817 -135112323 - AluY SINE Alu -13 298 1 4391 143 26 30 chrX 41861817 41862218 -135111922 - L1MB5 LINE L1 -286 5888 5487 189 0 0 0 chrX 41862218 41862239 -135111901 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4391 143 26 30 chrX 41862239 41862399 -135111741 - L1MB5 LINE L1 -687 5487 5323 1906 148 27 20 chrX 41862399 41862697 -135111443 - AluJo SINE Alu -12 300 1 4391 143 26 30 chrX 41862697 41862820 -135111320 - L1MB5 LINE L1 -851 5323 5201 878 182 0 25 chrX 41862820 41862979 -135111161 - AluJo/FRAM SINE Alu -4 308 154 477 187 0 0 chrX 41862979 41863054 -135111086 - AluJ/FLAM SINE Alu -236 76 2 631 244 52 21 chrX 41863130 41863323 -135110817 + MER63A DNA MER1_type 1 199 -11 2413 84 0 0 chrX 41863607 41863904 -135110236 - AluSg SINE Alu -13 297 1 204 240 106 29 chrX 41864223 41864327 -135109813 - L2 LINE L2 -236 3036 2925 2195 102 0 31 chrX 41864391 41864713 -135109427 - AluSx SINE Alu 0 312 13 2182 74 3 0 chrX 41864868 41865184 -135108956 - AluY SINE Alu 0 317 1 1723 143 17 3 chrX 41865184 41865477 -135108663 - AluJb SINE Alu -15 297 1 1175 248 27 17 chrX 41865556 41865850 -135108290 - L2 LINE L2 -744 2570 2274 1080 140 0 0 chrX 41865851 41866008 -135108132 + AluSq SINE Alu 1 157 -156 1614 159 87 0 chrX 41866066 41866342 -135107798 - AluJo SINE Alu -1 301 2 686 283 125 0 chrX 41866345 41866529 -135107611 + MIR SINE MIR 21 227 -35 800 40 0 0 chrX 41866529 41866628 -135107512 - AluSg/x SINE Alu -11 298 200 733 222 0 0 chrX 41866702 41866855 -135107285 + L1MA10 LINE L1 6180 6332 -2 1001 118 0 0 chrX 41867117 41867332 -135106808 - AluSg/x SINE Alu 0 375 161 686 13 0 0 chrX 41867348 41867424 -135106716 + AluSq/x SINE Alu 61 136 -176 1950 94 0 31 chrX 41867424 41867711 -135106429 + AluSx SINE Alu 21 298 -14 1989 208 66 48 chrX 41867822 41868385 -135105755 + MER90 LTR ERV1 3 575 0 665 252 61 70 chrX 41868457 41868647 -135105493 + MLT1E LTR MaLR 1 190 -352 294 50 0 0 chrX 41868647 41868687 -135105453 + (TC)n Simple_repeat Simple_repeat 1 40 0 665 252 61 70 chrX 41868687 41868726 -135105414 + MLT1E LTR MaLR 190 228 -314 325 267 0 0 chrX 41868776 41868836 -135105304 + MLT1E LTR MaLR 370 429 -164 1055 83 22 33 chrX 41868899 41869079 -135105061 + L1MA1 LINE L1 5937 6114 -188 293 73 0 0 chrX 41869080 41869121 -135105019 - AluSp SINE Alu -10 293 253 1705 63 0 0 chrX 41869121 41869327 -135104813 - AluSp SINE Alu -107 206 1 1322 56 5 93 chrX 41869327 41869347 -135104793 + L1MA1 LINE L1 6108 6128 -174 2335 71 0 3 chrX 41869347 41869642 -135104498 - AluY SINE Alu -17 294 1 1322 56 5 93 chrX 41869642 41869668 -135104472 + L1MA1 LINE L1 6128 6155 -147 1807 133 24 3 chrX 41869668 41869962 -135104178 + AluSq SINE Alu 1 300 -13 1322 56 5 93 chrX 41869962 41870128 -135104012 + L1MA1 LINE L1 6155 6302 0 2181 110 7 0 chrX 41870143 41870451 -135103689 + AluSx SINE Alu 1 310 -2 460 241 113 0 chrX 41870451 41870584 -135103556 + L1ME3A LINE L1 5732 5879 -291 1950 132 3 0 chrX 41870584 41870879 -135103261 + AluSx SINE Alu 1 296 -16 2314 48 0 48 chrX 41870927 41871241 -135102899 + AluY SINE Alu 1 299 -12 27 92 0 0 chrX 41871260 41871336 -135102804 + AT_rich Low_complexity Low_complexity 1 76 0 2469 55 3 3 chrX 41871348 41871657 -135102483 + AluY SINE Alu 1 309 -2 1526 138 0 147 chrX 41871660 41871819 -135102321 + AluJo SINE Alu 1 81 -221 2115 104 7 0 chrX 41871819 41872118 -135102022 + AluSq SINE Alu 1 301 -12 1526 138 0 147 chrX 41872118 41872312 -135101828 + AluJo SINE Alu 81 302 0 1939 55 0 0 chrX 41872707 41872944 -135101196 + AluSq SINE Alu 1 237 -76 1663 139 38 29 chrX 41972944 41973260 -135000880 + L1MC2 LINE L1 5867 6185 -159 3119 24 0 0 chrX 41973570 41973941 -135000199 - L1P LINE L1 -1563 4583 4213 7600 26 0 1 chrX 41973941 41974961 -134999179 + L1PA4 LINE L1 5133 6151 -4 1221 248 94 35 chrX 41974979 41975434 -134998706 + L1M4 LINE L1 3839 4320 -1826 259 268 28 0 chrX 41975444 41975515 -134998625 + L1PA12 LINE L1 2 74 -7507 * 14918 120 37 0 chrX 41975514 41977865 -134996275 - L1PA8A LINE L1 -1485 4661 2225 4042 97 38 2 chrX 41977862 41978931 -134995209 + L1PA8A LINE L1 4668 5783 -348 * 1957 93 4 11 chrX 41978931 41979200 -134994940 + L1PB1 LINE L1 5874 6150 -1 6639 151 10 5 chrX 41979777 41981690 -134992450 - L1PA13 LINE L1 -2 6161 4144 1106 75 149 0 chrX 41982954 41983128 -134991012 + L1PB2 LINE L1 5951 6150 -1 2260 130 120 8 chrX 41983216 41983600 -134990540 - MSTA LTR MaLR 0 428 2 299 237 217 20 chrX 41985905 41986057 -134988083 + L1MC4 LINE L1 6765 6946 -1096 2291 108 0 6 chrX 41986079 41986393 -134987747 + AluSx SINE Alu 1 312 0 1116 268 119 18 chrX 41986397 41986908 -134987232 + L1MC4a LINE L1 5606 6168 -1640 284 257 70 82 chrX 41987199 41987370 -134986770 + HAL1 LINE L1 29 197 -2310 15158 31 3 1 chrX 41987441 41989287 -134984853 - L1P LINE L1 -1392 4754 2904 17070 41 0 0 chrX 41989289 41992179 -134981961 + L1PA5 LINE L1 3259 6154 0 537 235 148 9 chrX 41992179 41992396 -134981744 + HAL1 LINE L1 2075 2321 -186 * 3158 196 40 23 chrX 41992393 41993504 -134980636 + L1M4 LINE L1 4558 5695 -489 * 5707 165 53 6 chrX 41993492 41993737 -134980403 + L1MC1 LINE L1 5091 5323 -1010 2431 67 13 0 chrX 41993737 41994037 -134980103 + AluSp SINE Alu 1 304 -9 5707 165 53 6 chrX 41994037 41994385 -134979755 + L1MC1 LINE L1 5323 5653 -680 2103 130 3 10 chrX 41994385 41994693 -134979447 + AluJb SINE Alu 1 306 -6 5707 165 53 6 chrX 41994693 41995291 -134978849 + L1MC1 LINE L1 5653 6332 -1 327 233 53 0 chrX 41995321 41995455 -134978685 + L1MEc LINE L1 2548 2650 -3890 6004 201 43 61 chrX 41995506 41997412 -134976728 + L1M4 LINE L1 16 1918 -4728 6522 158 27 21 chrX 41997413 41998771 -134975369 + L1PA16 LINE L1 3960 5354 -812 2165 117 0 3 chrX 41998771 41999061 -134975079 + AluSx SINE Alu 1 289 -23 6522 158 27 21 chrX 41999061 41999870 -134974270 + L1PA16 LINE L1 5354 6157 -9 679 228 0 103 chrX 41999865 42000039 -134974101 + L1M4 LINE L1 1891 2037 -4609 * 936 85 15 0 chrX 42000039 42000169 -134973971 + FLAM_C SINE Alu 2 133 0 679 228 0 103 chrX 42000169 42000227 -134973913 + L1M4 LINE L1 2037 2099 -4547 1560 166 25 32 chrX 42000250 42000528 -134973612 - AluJo SINE Alu -34 278 3 206 170 0 21 chrX 42000542 42000589 -134973551 + (TA)n Simple_repeat Simple_repeat 1 46 0 210 98 33 66 chrX 42000613 42000735 -134973405 + (TA)n Simple_repeat Simple_repeat 1 118 0 2244 97 7 7 chrX 42000774 42001073 -134973067 + AluSx SINE Alu 1 299 -13 881 230 46 18 chrX 42001078 42001361 -134972779 + L1M4c LINE L1 1197 1487 -4897 340 100 0 0 chrX 42001366 42001416 -134972724 - L1M3 LINE L1 -361 5807 5758 * 13263 160 33 29 chrX 42001410 42003049 -134971091 - L1 LINE L1 -2216 5349 3719 2243 105 0 3 chrX 42003049 42003345 -134970795 - AluSg SINE Alu -10 300 6 13263 160 33 29 chrX 42003345 42004490 -134969650 - L1 LINE L1 -3846 3719 2581 2200 114 3 0 chrX 42004490 42004787 -134969353 - AluSx SINE Alu -14 298 1 13263 160 33 29 chrX 42004787 42005546 -134968594 - L1 LINE L1 -4984 2581 1827 2486 47 3 17 chrX 42005546 42005846 -134968294 + AluY SINE Alu 1 296 -15 13263 160 33 29 chrX 42005846 42005906 -134968234 - L1 LINE L1 -5738 1827 1769 252 0 0 0 chrX 42005906 42005934 -134968206 + (TC)n Simple_repeat Simple_repeat 2 29 0 13263 160 33 29 chrX 42005934 42006961 -134967179 - L1 LINE L1 -5796 1769 12 1310 221 60 0 chrX 42006964 42007280 -134966860 - L1 LINE L1 -3106 3040 2706 1456 238 84 45 chrX 42007301 42007740 -134966400 + L1ME1 LINE L1 5582 6049 -117 2248 106 3 0 chrX 42007740 42008042 -134966098 - AluSx SINE Alu -8 304 2 1456 238 84 45 chrX 42008042 42008160 -134965980 + L1ME1 LINE L1 6049 6161 -5 903 218 85 5 chrX 42008213 42008424 -134965716 + L1MCa LINE L1 35 262 -6164 * 2841 197 14 5 chrX 42008419 42009009 -134965131 + L1MCa LINE L1 776 1370 -5056 * 5238 149 25 20 chrX 42009006 42009261 -134964879 + L1MC2 LINE L1 5177 5429 -2356 2247 109 0 0 chrX 42009261 42009564 -134964576 + AluSx SINE Alu 1 303 -9 5238 149 25 20 chrX 42009564 42010338 -134963802 + L1MC2 LINE L1 5429 7671 -114 41 36 0 0 chrX 42010343 42010398 -134963742 + AT_rich Low_complexity Low_complexity 1 55 0 613 128 27 88 chrX 42010398 42010484 -134963656 + L1MC2 LINE L1 6205 6280 -64 2313 76 17 0 chrX 42010484 42010773 -134963367 - AluSx SINE Alu -18 294 1 613 128 27 88 chrX 42010773 42010834 -134963306 + L1MC2 LINE L1 6280 6343 -1 268 185 15 0 chrX 42010836 42010901 -134963239 + HAL1 LINE L1 2306 2371 -136 862 315 82 37 chrX 42011371 42012688 -134961452 + L1ME4a LINE L1 3689 5090 -1056 5446 111 13 5 chrX 42012692 42013511 -134960629 + L1MA4 LINE L1 5450 6275 -25 34 0 0 0 chrX 42013535 42013569 -134960571 + AT_rich Low_complexity Low_complexity 1 34 0 521 296 64 75 chrX 42013688 42014063 -134960077 + L1ME4a LINE L1 5665 6035 -86 747 264 125 39 chrX 42014099 42014436 -134959704 - L2 LINE L2 0 3313 2948 24 0 0 0 chrX 42014459 42014483 -134959657 + AT_rich Low_complexity Low_complexity 1 24 0 315 259 62 0 chrX 42014484 42014565 -134959575 - L2 LINE L2 -317 2955 2870 22 35 0 0 chrX 42014684 42014713 -134959427 + AT_rich Low_complexity Low_complexity 1 29 0 443 237 93 0 chrX 42014747 42014865 -134959275 + MIR SINE MIR 61 189 -73 259 163 0 0 chrX 42014883 42014926 -134959214 - MLT1K LTR MaLR 0 588 546 189 216 0 0 chrX 42015513 42015550 -134958590 + L2 LINE L2 3217 3253 -19 198 231 0 0 chrX 42015575 42015614 -134958526 + L2 LINE L2 3024 3062 -210 279 292 88 52 chrX 42015684 42015876 -134958264 - L2 LINE L2 -1 3271 3073 576 246 35 23 chrX 42015892 42016063 -134958077 + L2 LINE L2 2280 2452 -862 352 306 54 50 chrX 42016297 42016575 -134957565 + L1ME4a LINE L1 5591 5869 -252 217 371 69 0 chrX 42016794 42016910 -134957230 - L2 LINE L2 -28 3244 3121 735 108 0 20 chrX 42017784 42017886 -134956254 + FLAM_C SINE Alu 19 118 -25 466 213 177 14 chrX 42017977 42018118 -134956022 - MER5A DNA MER1_type -21 168 5 1857 78 82 4 chrX 42018263 42018518 -134955622 + AluSx SINE Alu 1 275 -37 180 0 0 0 chrX 42018523 42018543 -134955597 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 322 267 44 0 chrX 42018613 42018703 -134955437 - MIR SINE MIR -1 261 168 217 299 91 0 chrX 42018712 42018789 -134955351 + L2 LINE L2 3176 3259 -13 1095 204 56 21 chrX 42018996 42019334 -134954806 - L1MC5 LINE L1 -32 7929 7580 267 305 0 0 chrX 42019514 42019574 -134954566 + (TG)n Simple_repeat Simple_repeat 1 60 0 348 240 62 73 chrX 42019617 42019809 -134954331 - L2 LINE L2 -41 3272 3083 545 280 64 32 chrX 42019824 42019963 -134954177 + L1M4 LINE L1 14 164 -6378 4999 103 19 7 chrX 42019963 42020645 -134953495 + L1PA16 LINE L1 5476 6165 -1 545 280 64 32 chrX 42020645 42020723 -134953417 + L1M4 LINE L1 164 238 -6304 371 268 56 139 chrX 42020730 42021239 -134952901 + L2 LINE L2 2762 3227 -45 297 109 0 0 chrX 42021239 42021285 -134952855 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 181 215 114 13 chrX 42021286 42021365 -134952775 + L3 LINE CR1 1367 1453 -124 2181 177 87 100 chrX 42021659 42022291 -134951849 - MLT1E3 LTR MaLR 0 624 1 182 353 33 49 chrX 42022303 42022425 -134951715 - L2 LINE L2 -236 3036 2917 225 284 0 0 chrX 42023051 42023132 -134951008 + (CA)n Simple_repeat Simple_repeat 2 82 0 9589 96 18 7 chrX 42023162 42024448 -134949692 - HSMAR2 DNA Mariner -1 1301 2 288 286 34 115 chrX 42025677 42025911 -134948229 - L2 LINE L2 -85 3187 2973 * 310 315 93 19 chrX 42025890 42026106 -134948034 - L2 LINE L2 -448 2866 2635 997 271 66 66 chrX 42027033 42027410 -134946730 + L2 LINE L2 2896 3272 0 275 305 19 19 chrX 42027971 42028125 -134946015 + (CAGAGA)n Simple_repeat Simple_repeat 4 157 0 21174 148 35 62 chrX 42029096 42032445 -134941695 + L1M1 LINE L1 12 3452 -4113 2227 120 0 0 chrX 42032445 42032745 -134941395 - AluY SINE Alu -10 301 2 21174 148 35 62 chrX 42032745 42034408 -134939732 + L1M1 LINE L1 3452 5159 -2406 1172 51 7 0 chrX 42034408 42034545 -134939595 + AluY SINE Alu 1 138 -173 21174 148 35 62 chrX 42034545 42034750 -134939390 + L1M1 LINE L1 5159 5368 -2197 2360 90 0 0 chrX 42034750 42035040 -134939100 + AluY SINE Alu 2 291 -20 21174 148 35 62 chrX 42035040 42036566 -134937574 + L1M1 LINE L1 5368 6705 -860 1593 111 43 13 chrX 42036567 42036802 -134937338 + AluSq SINE Alu 61 302 -11 44149 47 1 4 chrX 42037327 42039171 -134934969 + L1PA4 LINE L1 2 1851 -4304 8968 61 5 165 chrX 42039171 42040765 -134933375 - SVA Other Other 0 1386 48 216 0 0 0 chrX 42040766 42040790 -134933350 + (GGGAGA)n Simple_repeat Simple_repeat 2 25 0 44149 47 1 4 chrX 42040790 42045115 -134929025 + L1PA4 LINE L1 1850 6152 -3 317 333 41 29 chrX 42045130 42045301 -134928839 - MLT1K LTR MaLR -333 255 83 1266 242 93 37 chrX 42045580 42046010 -134928130 - LTR67 LTR ERVL -7 550 97 232 317 89 0 chrX 42046713 42046814 -134927326 + MIR SINE MIR 80 189 -73 515 263 56 39 chrX 42046908 42047087 -134927053 - MIR3 SINE MIR -22 186 5 214 324 63 21 chrX 42047157 42047299 -134926841 - L2 LINE L2 -4 3268 3121 441 267 77 41 chrX 42047514 42047764 -134926376 + L1M4b LINE L1 20 553 -6302 6431 138 10 24 chrX 42048095 42048601 -134925539 - L1MA6 LINE L1 -9 6291 5780 540 42 0 0 chrX 42048601 42048672 -134925468 + (TG)n Simple_repeat Simple_repeat 2 72 0 6431 138 10 24 chrX 42048672 42049142 -134924998 - L1MA6 LINE L1 -520 5780 5336 6535 101 5 13 chrX 42049142 42050503 -134923637 - L1PA13 LINE L1 -1 6162 4791 6431 138 10 24 chrX 42050503 42050760 -134923380 - L1MA6 LINE L1 -964 5336 5077 1068 164 16 0 chrX 42050762 42050945 -134923195 + L1M3 LINE L1 5624 5809 -362 6149 131 8 27 chrX 42050945 42051409 -134922731 + L1PA16 LINE L1 4927 5398 -768 2635 69 0 0 chrX 42051409 42051726 -134922414 + L1PA6 LINE L1 5827 6143 -11 6149 131 8 27 chrX 42051726 42052521 -134921619 + L1PA16 LINE L1 5398 6166 0 1031 257 35 15 chrX 42052558 42052859 -134921281 + L1ME1 LINE L1 5887 6159 -7 242 309 66 90 chrX 42053038 42053371 -134920769 - L2 LINE L2 -346 2968 2644 * 996 295 50 25 chrX 42053369 42053728 -134920412 - L2 LINE L2 -27 3286 2919 802 306 92 30 chrX 42054070 42054334 -134919806 - L2 LINE L2 -11 3302 3011 514 264 18 0 chrX 42054334 42054444 -134919696 - MER81 DNA DNA -2 112 1 802 306 92 30 chrX 42054444 42054516 -134919624 - L2 LINE L2 -302 3011 2945 195 342 0 13 chrX 42055243 42055319 -134918821 + L3 LINE CR1 1493 1567 -10 30128 43 1 1 chrX 42055745 42060202 -134913938 + L1PA5 LINE L1 1412 6154 0 29 28 0 0 chrX 42060209 42060245 -134913895 + AT_rich Low_complexity Low_complexity 1 36 0 329 267 48 68 chrX 42061195 42061341 -134912799 + L2 LINE L2 2255 2397 -917 27 0 0 0 chrX 42062509 42062536 -134911604 + AT_rich Low_complexity Low_complexity 1 27 0 1935 140 0 3 chrX 42062539 42062825 -134911315 + AluJb SINE Alu 1 285 -27 183 42 0 0 chrX 42062829 42062853 -134911287 + (TATAA)n Simple_repeat Simple_repeat 4 27 0 297 0 0 0 chrX 42064354 42064387 -134909753 + (CA)n Simple_repeat Simple_repeat 2 34 0 2069 102 14 0 chrX 42064478 42064763 -134909377 + AluSx SINE Alu 1 289 -23 237 262 70 59 chrX 42065290 42065477 -134908663 - L2 LINE L2 -1155 2159 1971 291 366 0 0 chrX 42065724 42065817 -134908323 + G-rich Low_complexity Low_complexity 1 93 0 3609 113 43 51 chrX 42065928 42066536 -134907604 - LTR26 LTR ERV1 0 603 1 2399 95 0 7 chrX 42067195 42067501 -134906639 - AluSg SINE Alu -4 306 3 375 350 49 0 chrX 42067874 42068017 -134906123 - MER91A DNA MER1_type -35 161 12 254 216 182 11 chrX 42068358 42068446 -134905694 + MIR SINE MIR 152 254 -8 205 158 0 88 chrX 42068659 42068716 -134905424 + MIR SINE MIR 85 136 -72 1014 217 110 27 chrX 42068867 42069167 -134904973 + Charlie2 DNA MER1_type 6 330 -2452 * 2127 207 94 5 chrX 42069158 42069733 -134904407 + Charlie2 DNA MER1_type 1856 2481 -381 6329 95 31 16 chrX 42069738 42070685 -134903455 + L1MA3 LINE L1 5345 6305 0 5312 125 4 23 chrX 42073393 42073731 -134900409 - L1PB4 LINE L1 0 6156 5813 2562 48 7 0 chrX 42073731 42074022 -134900118 + AluY SINE Alu 1 293 -18 207 0 0 0 chrX 42074022 42074045 -134900095 + (TA)n Simple_repeat Simple_repeat 1 23 0 5312 125 4 23 chrX 42074045 42074544 -134899596 - L1PB4 LINE L1 -341 5815 5334 * 37167 53 1 1 chrX 42074535 42079081 -134895059 - L1P LINE L1 -1593 4553 11 248 198 161 0 chrX 42079348 42079424 -134894716 - MIR3 SINE MIR -4 204 115 2475 111 28 13 chrX 42079424 42079821 -134894319 + L1MA3 LINE L1 5903 6305 0 256 250 106 53 chrX 42079848 42079980 -134894160 - L2 LINE L2 -13 3259 3121 212 233 14 32 chrX 42080112 42080182 -134893958 - MIR SINE MIR -127 81 14 334 197 0 0 chrX 42080857 42080923 -134893217 + MIR SINE MIR 84 149 -113 3211 160 8 8 chrX 42081055 42081574 -134892566 - MER68 LTR ERV1 -36 526 8 358 243 75 0 chrX 42081584 42081691 -134892449 + L2 LINE L2 2230 2344 -970 * 705 300 52 4 chrX 42081689 42081919 -134892221 - MIR SINE MIR -1 261 21 8986 144 8 11 chrX 42081919 42084197 -134889943 - L1PA12 LINE L1 0 6168 3877 375 328 76 31 chrX 42084233 42084523 -134889617 + L2 LINE L2 2337 2639 -675 577 236 90 39 chrX 42084557 42084735 -134889405 + MLT1J LTR MaLR 323 509 -2 1788 218 3 0 chrX 42085389 42085733 -134888407 + L1MC2 LINE L1 50 394 -6032 389 156 55 119 chrX 42085734 42085843 -134888297 + MLT2B1 LTR ERVL 409 510 -10 7520 201 74 58 chrX 42085849 42086757 -134887383 + L1MC2 LINE L1 944 1836 -4590 393 221 26 0 chrX 42086757 42086834 -134887306 + Tigger5 DNA MER2_type 1 79 -2244 242 97 0 0 chrX 42086842 42086873 -134887267 + Tigger5 DNA MER2_type 2292 2322 -1 7520 201 74 58 chrX 42086873 42087381 -134886759 + L1MC2 LINE L1 1842 2341 -4085 1834 134 0 0 chrX 42087381 42087664 -134886476 - L1PA13 LINE L1 0 6163 5881 7520 201 74 58 chrX 42087664 42089349 -134884791 + L1MC2 LINE L1 2341 4215 -2211 2220 108 7 3 chrX 42089349 42089645 -134884495 - AluSx SINE Alu -15 297 1 7520 201 74 58 chrX 42089645 42089989 -134884151 + L1MC2 LINE L1 4215 4552 -1874 585 189 27 61 chrX 42089990 42090138 -134884002 + HsTC2 DNA Tc2 532 674 -1224 * 1064 206 67 18 chrX 42090136 42090418 -134883722 + HsTC2 DNA Tc2 1328 1799 -99 4095 204 23 18 chrX 42090423 42090631 -134883509 + L1MC2 LINE L1 4544 4750 -1874 1952 148 3 0 chrX 42090631 42091097 -134883043 + AluSx SINE Alu 1 467 0 213 39 0 0 chrX 42091099 42091125 -134883015 + (GGAAA)n Simple_repeat Simple_repeat 5 30 0 4095 204 23 18 chrX 42091125 42092561 -134881579 + L1MC2 LINE L1 4750 6195 -429 * 8035 140 13 14 chrX 42092559 42095031 -134879109 + L1MA2 LINE L1 3835 6303 -1 13651 30 2 0 chrX 42095145 42096758 -134877382 - L1PA3 LINE L1 -1503 4643 3028 7934 19 0 1 chrX 42096758 42098272 -134875868 + L1PA3 LINE L1 4640 6152 -3 188 278 25 62 chrX 42099897 42100059 -134874081 + L2 LINE L2 2898 3053 -219 201 39 0 0 chrX 42100507 42100533 -134873607 + (GTGTG)n Simple_repeat Simple_repeat 5 30 0 502 287 48 30 chrX 42102315 42102545 -134871595 + MIR SINE MIR 7 240 -22 256 289 86 23 chrX 42102659 42102787 -134871353 - MIR3 SINE MIR -65 143 8 303 272 49 37 chrX 42102933 42103095 -134871045 - MER5A DNA MER1_type -2 187 24 281 235 82 0 chrX 42103311 42103409 -134870731 + (TTCA)n Simple_repeat Simple_repeat 2 107 0 739 319 85 17 chrX 42103411 42103881 -134870259 - LTR33 LTR ERVL 0 521 20 260 316 164 6 chrX 42104977 42105148 -134868992 - MIR SINE MIR -12 250 53 1621 282 52 47 chrX 42106119 42106864 -134867276 + ERVL LTR ERVL 3205 3953 -1811 205 242 48 0 chrX 42106875 42106937 -134867203 - MIR SINE MIR -2 260 196 451 267 38 2 chrX 42106944 42107157 -134866983 + ERVL LTR ERVL 3967 4222 -1542 829 147 88 20 chrX 42107158 42107362 -134866778 + MER106B DNA MER1_type 827 1044 -15 184 312 109 26 chrX 42108433 42108699 -134865441 + L2 LINE L2 625 912 -2402 2936 10 0 0 chrX 42108988 42109299 -134864841 - AluY SINE Alu 0 311 1 580 234 36 7 chrX 42110073 42110210 -134863930 + MER117 DNA MER1_type 1 141 -56 431 216 63 33 chrX 42111028 42111189 -134862951 + MIR SINE MIR 47 224 -38 203 255 0 0 chrX 42111845 42111896 -134862244 + (TG)n Simple_repeat Simple_repeat 2 52 0 279 261 140 6 chrX 42111935 42112101 -134862039 + MIR SINE MIR 40 226 -36 475 296 68 11 chrX 42112175 42112351 -134861789 + MIR SINE MIR 20 205 -57 224 211 0 35 chrX 42112407 42112464 -134861676 + (CATA)n Simple_repeat Simple_repeat 4 58 0 219 252 42 67 chrX 42113227 42113346 -134860794 + MIR SINE MIR 39 142 -66 224 316 0 0 chrX 42114019 42114095 -134860045 + MIR SINE MIR 176 251 -11 283 324 17 28 chrX 42114183 42114359 -134859781 + MIR3 SINE MIR 2 175 -33 273 277 69 28 chrX 42115511 42115662 -134858478 + MIR SINE MIR 70 230 -32 207 333 137 17 chrX 42115707 42115824 -134858316 + L2 LINE L2 3142 3272 0 533 229 146 62 chrX 42118572 42118943 -134855197 - L1ME4a LINE L1 -2 6119 5718 304 315 64 18 chrX 42119083 42119302 -134854838 - L1ME4a LINE L1 -946 5200 4972 1525 328 38 36 chrX 42119945 42120687 -134853453 - L2 LINE L2 -520 2794 2048 2223 115 6 13 chrX 42120687 42121001 -134853139 + AluSx SINE Alu 1 312 0 1525 328 38 36 chrX 42121001 42121180 -134852960 - L2 LINE L2 -1266 2048 1871 547 220 0 18 chrX 42121188 42121297 -134852843 + MLT1J LTR MaLR 1 107 -404 473 293 130 17 chrX 42121292 42121485 -134852655 + MLT1J LTR MaLR 300 610 -5 * 291 28 0 0 chrX 42122787 42122823 -134851317 + (TC)n Simple_repeat Simple_repeat 2 37 0 1741 137 0 70 chrX 42122838 42123137 -134851003 - AluJb SINE Alu -34 278 1 345 319 35 7 chrX 42123483 42123627 -134850513 - MIR SINE MIR -112 150 3 357 252 62 62 chrX 42123821 42124079 -134850061 - HAL1 LINE L1 0 2507 2250 335 241 76 32 chrX 42124206 42124364 -134849776 - HAL1b LINE L1 -437 911 747 303 261 0 11 chrX 42124413 42124501 -134849639 - HAL1 LINE L1 -347 2160 2074 315 0 0 0 chrX 42124652 42124687 -134849453 + (CA)n Simple_repeat Simple_repeat 2 36 0 1240 221 70 105 chrX 42124736 42124962 -134849178 - L2 LINE L2 0 3313 3081 1321 88 5 0 chrX 42124962 42125156 -134848984 + L1MA4A LINE L1 6107 6301 -2 1240 221 70 105 chrX 42125156 42125642 -134848498 - L2 LINE L2 -232 3081 2611 1039 287 65 42 chrX 42125675 42125760 -134848380 - HAL1 LINE L1 -1127 1380 1298 1910 143 0 17 chrX 42125760 42126054 -134848086 - AluJo SINE Alu -23 289 1 1039 287 65 42 chrX 42126054 42126539 -134847601 - HAL1 LINE L1 -1209 1298 797 1128 207 51 8 chrX 42127050 42127287 -134846853 - MIR SINE MIR -13 249 3 471 264 153 0 chrX 42128114 42128277 -134845863 - MIR SINE MIR -13 249 62 507 270 151 0 chrX 42128588 42128740 -134845400 + MER5A DNA MER1_type 9 183 -6 713 271 39 27 chrX 42129217 42129374 -134844766 + MIR SINE MIR 2 165 -97 2444 90 3 0 chrX 42129374 42129684 -134844456 - AluY SINE Alu 0 311 1 713 271 39 27 chrX 42129684 42129784 -134844356 + MIR SINE MIR 165 262 0 269 339 40 16 chrX 42129789 42129913 -134844227 - L2 LINE L2 -9 3263 3137 1656 177 25 0 chrX 42129923 42130205 -134843935 + AluJo SINE Alu 1 289 -23 433 221 52 52 chrX 42130616 42130788 -134843352 - Charlie7 DNA MER1_type -1 2611 2440 264 328 45 80 chrX 42131207 42131408 -134842732 - MER91A DNA MER1_type -2 194 1 211 233 58 58 chrX 42132046 42132132 -134842008 + MIR SINE MIR 89 174 -88 319 279 0 0 chrX 42132421 42132500 -134841640 - L2 LINE L2 -5 3308 3230 * 931 242 79 29 chrX 42132476 42132753 -134841387 - L2 LINE L2 -730 2584 2294 1056 32 8 0 chrX 42132756 42132881 -134841259 - L1PA2 LINE L1 -252 5903 5778 559 0 0 0 chrX 42132881 42132946 -134841194 + L1PA3 LINE L1 6088 6152 -3 718 201 26 123 chrX 42132956 42133225 -134840915 - L2 LINE L2 -1018 2296 2054 180 350 36 77 chrX 42133239 42133433 -134840707 + L2 LINE L2 2995 3180 -92 23 0 0 0 chrX 42133519 42133542 -134840598 + AT_rich Low_complexity Low_complexity 1 23 0 216 185 56 19 chrX 42133805 42133859 -134840281 + MIR SINE MIR 111 166 -96 223 225 34 56 chrX 42133933 42134022 -134840118 + (TCTCTG)n Simple_repeat Simple_repeat 2 88 0 343 333 124 0 chrX 42134177 42134354 -134839786 + MIR SINE MIR 52 250 -12 335 264 49 37 chrX 42135748 42135911 -134838229 + MER5A DNA MER1_type 23 187 -2 256 289 86 23 chrX 42136057 42136185 -134837955 + MIR3 SINE MIR 8 143 -65 563 284 47 30 chrX 42136299 42136531 -134837609 - MIR SINE MIR -22 240 5 192 40 0 0 chrX 42137013 42137038 -134837102 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 238 283 36 78 chrX 42138704 42138870 -134835270 - L2 LINE L2 -219 3053 2895 21119 157 19 16 chrX 42140575 42143504 -134830636 - L1MA2 LINE L1 0 7723 4805 5613 115 22 2 chrX 42143504 42143667 -134830473 - L1PA13 LINE L1 0 6163 6005 2204 112 3 0 chrX 42143667 42143953 -134830187 - AluSp SINE Alu -26 287 1 5613 115 22 2 chrX 42143953 42145183 -134828957 - L1PA13 LINE L1 -158 6005 4804 21119 157 19 16 chrX 42145183 42147593 -134826547 - L1MA2 LINE L1 -2918 4805 2344 2259 110 7 0 chrX 42147593 42147892 -134826248 + AluSx SINE Alu 1 301 -11 21119 157 19 16 chrX 42147892 42150226 -134823914 - L1MA2 LINE L1 -5379 2344 19 2226 239 20 9 chrX 42152754 42153057 -134821083 + L1MCb LINE L1 500 813 -5232 1494 174 8 0 chrX 42153057 42153304 -134820836 + AluJb SINE Alu 41 289 -23 2226 239 20 9 chrX 42153304 42153549 -134820591 + L1MCb LINE L1 813 1054 -4991 5753 119 1 14 chrX 42153569 42154432 -134819708 - L1PA15 LINE L1 -3 6162 5311 3325 186 92 10 chrX 42154432 42155686 -134818454 + L1MCb LINE L1 1050 2502 -4062 * 38734 37 31 2 chrX 42155683 42160380 -134813760 + L1P LINE L1 2 4837 -1309 993 43 0 0 chrX 42160382 42160497 -134813643 + AluYb8 SINE Alu 198 312 -6 8007 17 0 0 chrX 42160497 42161828 -134812312 + L1PA2 LINE L1 4824 6154 -1 2693 223 9 47 chrX 42161840 42162667 -134811473 + L1MCb LINE L1 2508 3298 -3266 820 267 20 16 chrX 42162974 42163221 -134810919 + MIR SINE MIR 3 250 -12 10042 36 3 0 chrX 42163699 42165648 -134808492 + L1PA5 LINE L1 4203 6154 0 1012 174 5 47 chrX 42165766 42165978 -134808162 + MER3 DNA MER1_type 7 209 0 408 20 0 0 chrX 42169229 42169278 -134804862 + (CTTG)n Simple_repeat Simple_repeat 2 50 0 266 122 0 0 chrX 42169278 42169319 -134804821 + MIR SINE MIR 84 124 -138 629 246 104 17 chrX 42169589 42169829 -134804311 - MIR SINE MIR 0 262 2 185 265 12 60 chrX 42169839 42169922 -134804218 + L3 LINE CR1 1280 1358 -219 737 297 7 19 chrX 42169930 42170240 -134803900 + L2 LINE L2 2459 2764 -550 391 245 33 54 chrX 42170469 42170653 -134803487 - MIR3 SINE MIR -7 201 22 265 226 26 41 chrX 42170599 42170711 -134803429 + MIR SINE MIR 79 150 -58 * 239 281 19 5 chrX 42171035 42171160 -134802980 + MIR SINE MIR 21 126 -82 370 188 32 85 chrX 42171174 42171303 -134802837 + L1ME LINE L1 5635 5756 -410 427 305 116 4 chrX 42173856 42174089 -134800051 + L2 LINE L2 621 879 -2435 2006 138 3 23 chrX 42174174 42174479 -134799661 - AluJo SINE Alu -13 299 1 267 330 0 10 chrX 42178018 42178115 -134796025 + (CCCCAG)n Simple_repeat Simple_repeat 2 97 0 354 244 0 12 chrX 42178313 42178399 -134795741 + MIR SINE MIR 48 132 -130 1695 194 10 44 chrX 42178427 42178814 -134795326 + MLT1A2 LTR MaLR 1 374 0 202 309 151 24 chrX 42179797 42179923 -134794217 + L3 LINE CR1 1348 1489 -88 219 270 47 61 chrX 42180490 42180638 -134793502 + MIR SINE MIR 39 184 -78 265 276 0 0 chrX 42181296 42181372 -134792768 + MIR SINE MIR 176 251 -11 282 265 29 66 chrX 42181507 42181643 -134792497 + MIR3 SINE MIR 50 180 -28 308 194 1 61 chrX 42182589 42182678 -134791462 + MIR SINE MIR 61 141 -67 208 353 80 27 chrX 42182800 42182950 -134791190 + L2 LINE L2 3114 3271 -1 1564 225 54 21 chrX 42186605 42187028 -134787112 + L1 LINE L1 2314 2750 -3396 188 65 0 32 chrX 42187029 42187060 -134787080 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 12604 29 2 0 chrX 42187060 42189266 -134784874 - L1PA3 LINE L1 -24 6131 3921 7097 183 51 8 chrX 42189275 42190804 -134783336 + L1 LINE L1 2740 4334 -1812 2494 95 11 16 chrX 42190812 42191174 -134782966 - L1PB1 LINE L1 -2 6149 5787 279 0 0 0 chrX 42191174 42191205 -134782935 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 318 26 0 0 chrX 42191204 42191243 -134782897 + (TG)n Simple_repeat Simple_repeat 2 40 0 2494 95 11 16 chrX 42191205 42191250 -134782890 - L1PB1 LINE L1 -364 5787 5782 226 155 0 52 chrX 42191288 42191346 -134782794 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 334 39 0 0 chrX 42191346 42191397 -134782743 - L1MA2 LINE L1 -151 6153 6103 321 221 41 8 chrX 42191397 42191519 -134782621 + (TA)n Simple_repeat Simple_repeat 1 126 0 218 202 0 67 chrX 42191522 42191700 -134782440 + (TATATG)n Simple_repeat Simple_repeat 2 167 0 301 233 12 23 chrX 42191703 42191789 -134782351 + (CATATA)n Simple_repeat Simple_repeat 5 89 0 320 147 11 68 chrX 42191791 42191968 -134782172 + (TATATG)n Simple_repeat Simple_repeat 3 169 0 474 247 0 33 chrX 42191984 42192331 -134781809 + (TA)n Simple_repeat Simple_repeat 1 335 0 474 247 0 33 chrX 42192347 42192529 -134781611 + (TA)n Simple_repeat Simple_repeat 1 176 0 474 247 0 33 chrX 42192544 42192726 -134781414 + (TA)n Simple_repeat Simple_repeat 1 176 0 * 508 151 0 78 chrX 42192665 42192857 -134781283 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 3882 71 26 11 chrX 42192873 42193426 -134780714 + L1P5 LINE L1 5236 5795 -356 44 35 0 0 chrX 42193452 42193510 -134780630 + AT_rich Low_complexity Low_complexity 1 58 0 360 43 93 37 chrX 42193513 42193674 -134780466 + (TA)n Simple_repeat Simple_repeat 2 171 0 3880 160 45 15 chrX 42193674 42194900 -134779240 - L1ME4a LINE L1 -157 5964 4713 395 296 99 56 chrX 42194898 42195341 -134778799 + L1MC3 LINE L1 5434 5895 -1913 * 333 333 42 57 chrX 42195383 42195805 -134778335 + L1ME LINE L1 20 427 -5643 1191 72 0 0 chrX 42195888 42196068 -134778072 + (TA)n Simple_repeat Simple_repeat 1 180 0 1271 265 63 28 chrX 42196078 42196833 -134777307 + L1ME LINE L1 464 1215 -4865 7961 19 14 0 chrX 42196863 42198237 -134775903 - L1PA3 LINE L1 0 6155 4773 3074 91 10 0 chrX 42198255 42198673 -134775467 - L1PA8 LINE L1 -15 6157 5736 3995 196 98 130 chrX 42198674 42199289 -134774851 + L1MC3 LINE L1 6045 6678 -1107 1974 125 11 0 chrX 42199289 42199553 -134774587 + AluSx SINE Alu 1 267 -45 3995 196 98 130 chrX 42199553 42200126 -134774014 + L1MC3 LINE L1 6678 7242 -543 298 234 26 13 chrX 42200126 42200206 -134773934 + MLT1F1 LTR MaLR 50 133 -442 3995 196 98 130 chrX 42200206 42200726 -134773414 + L1MC3 LINE L1 7242 7777 -8 1563 108 50 0 chrX 42200743 42201001 -134773139 - L1MA3 LINE L1 0 6305 6035 7416 28 1 0 chrX 42201015 42201870 -134772270 - L1PA3 LINE L1 0 6155 5300 3269 110 28 6 chrX 42201873 42202375 -134771765 - L1PA16 LINE L1 0 6166 5654 1924 222 48 31 chrX 42202741 42203286 -134770854 - L1ME3A LINE L1 -5 6165 5612 2678 202 43 10 chrX 42203722 42204231 -134769909 - REP3 LTR ERV 0 562 37 448 283 0 9 chrX 42204502 42204615 -134769525 + MER81 DNA DNA 1 112 -2 2159 114 4 0 chrX 42204808 42205112 -134769028 - AluSx SINE Alu 0 305 1 376 276 145 7 chrX 42205130 42205275 -134768865 - MIR SINE MIR -91 171 7 446 293 0 21 chrX 42205559 42205699 -134768441 - MER89-int LTR ERV1 -399 6402 6266 2015 123 70 22 chrX 42206900 42207257 -134766883 + THE1C LTR MaLR 2 375 0 276 228 114 73 chrX 42207589 42207712 -134766428 - HERVL40 LTR ERVL -2337 2686 2559 513 332 58 42 chrX 42208019 42208399 -134765741 - HERVL40 LTR ERVL -2655 2875 2490 16754 167 27 17 chrX 42209140 42210205 -134763935 - L1 LINE L1 -3386 3462 2409 3224 100 2 2 chrX 42210205 42210653 -134763487 + L1PA16 LINE L1 5710 6157 -9 16754 167 27 17 chrX 42210653 42213007 -134761133 - L1 LINE L1 -4439 2409 7 6032 107 21 0 chrX 42213258 42213813 -134760327 - L1PA13 LINE L1 -1 6477 5935 298 22 65 0 chrX 42213813 42213859 -134760281 + T-rich Low_complexity Low_complexity 2 50 0 6032 107 21 0 chrX 42213859 42214394 -134759746 - L1PA13 LINE L1 -543 5935 5374 11069 177 48 51 chrX 42214396 42217223 -134756917 - L1PA13 LINE L1 -1224 5237 2334 280 57 0 0 chrX 42217223 42217258 -134756882 + U2 snRNA snRNA 1 35 -153 11069 177 48 51 chrX 42217258 42218489 -134755651 - L1PA13 LINE L1 -4127 2334 1101 1257 132 4 53 chrX 42218488 42218731 -134755409 - L1PA13 LINE L1 -5639 236 6 * 2074 158 63 55 chrX 42219544 42220037 -134754103 + L1MB1 LINE L1 5671 6167 -1 669 199 36 0 chrX 42220052 42220218 -134753922 + L1M4 LINE L1 4909 5080 -1066 2444 178 7 2 chrX 42220318 42220761 -134753379 + L1PA12 LINE L1 11 455 -7126 959 149 0 11 chrX 42220765 42220939 -134753201 + L1MB8 LINE L1 5996 6167 -11 303 227 45 0 chrX 42221051 42221117 -134753023 - L1MDa LINE L1 -6393 147 79 2151 231 43 84 chrX 42221226 42221685 -134752455 - L1MD2 LINE L1 -62 6104 5628 5237 32 13 0 chrX 42221685 42222305 -134751835 + L1PA4 LINE L1 5525 6152 -3 2151 231 43 84 chrX 42222305 42222955 -134751185 - L1MD2 LINE L1 -538 5628 5048 1968 136 3 20 chrX 42222956 42223258 -134750882 - AluSg SINE Alu -11 299 3 600 244 52 28 chrX 42223262 42223512 -134750628 - L1MD2 LINE L1 -2136 4010 3755 35963 44 2 2 chrX 42223564 42228196 -134745944 + L1P LINE L1 1 4631 -1515 390 284 114 56 chrX 42229294 42229635 -134744505 - MER89-int LTR ERV1 -4591 2210 1850 286 226 27 116 chrX 42230511 42230657 -134743483 - MER89-int LTR ERV1 -5829 972 840 448 149 0 0 chrX 42231334 42231408 -134742732 - AluJ/FRAM SINE Alu -13 299 226 1545 272 63 20 chrX 42231551 42232102 -134742038 - MER90 LTR ERV1 0 575 1 1588 239 81 18 chrX 42232107 42233173 -134740967 + L1MCc LINE L1 1035 2181 -4760 657 241 103 9 chrX 42233194 42233418 -134740722 + L1M4 LINE L1 234 478 -6591 * 879 243 35 3 chrX 42233412 42233696 -134740444 + L1M4 LINE L1 4641 4933 -2234 1888 208 136 81 chrX 42233774 42234304 -134739836 + MLT1E2 LTR MaLR 96 626 0 254 203 33 111 chrX 42234304 42234457 -134739683 + L1M4 LINE L1 4929 5069 -2098 816 211 53 40 chrX 42234530 42234829 -134739311 + L1M4 LINE L1 5098 5400 -1767 33 0 0 0 chrX 42234904 42234937 -134739203 + AT_rich Low_complexity Low_complexity 1 33 0 330 26 0 0 chrX 42235114 42235153 -134738987 + (CA)n Simple_repeat Simple_repeat 2 40 0 320 375 33 53 chrX 42235935 42236180 -134737960 + L1M4b LINE L1 1497 1736 -5432 11340 208 29 50 chrX 42236261 42237286 -134736854 + L1M4b LINE L1 1786 2831 -4336 631 206 0 37 chrX 42237286 42237422 -134736718 + FLAM_C SINE Alu 1 131 -2 11340 208 29 50 chrX 42237422 42237488 -134736652 + L1M4b LINE L1 2831 2897 -4270 2092 126 7 7 chrX 42237488 42237781 -134736359 + AluSx SINE Alu 1 293 -19 11340 208 29 50 chrX 42237781 42241173 -134732967 + L1M4b LINE L1 2897 5867 -1300 915 223 110 56 chrX 42241176 42241531 -134732609 + MSTB2 LTR MaLR 1 374 -83 1472 171 24 0 chrX 42241532 42241830 -134732310 + L1M4b LINE L1 5920 6224 -943 * 15051 50 6 8 chrX 42241826 42242248 -134731892 - L1P LINE L1 -2898 3248 2826 2380 40 0 0 chrX 42242248 42242521 -134731619 - AluY SINE Alu 0 311 39 15051 50 6 8 chrX 42242521 42244148 -134729992 - L1P LINE L1 -3320 2826 1204 * 15801 59 1 0 chrX 42244144 42246682 -134727458 + L1PA4 LINE L1 3245 5785 -370 40861 51 1 3 chrX 42246682 42252888 -134721252 + L1PA4 LINE L1 1 6189 0 3239 29 0 0 chrX 42252888 42253271 -134720869 + L1PA4 LINE L1 5771 6153 -2 3361 183 15 3 chrX 42253275 42254022 -134720118 + L1MA8 LINE L1 6216 6970 -342 1046 104 0 0 chrX 42254023 42254177 -134719963 + MER41A LTR ERV1 400 553 -1 4431 106 34 27 chrX 42254264 42255080 -134719060 + MER41A-int LTR ERV1 1 1471 -5242 1022 136 0 8 chrX 42255072 42255251 -134718889 + PABL_A-int LTR ERV1 929 3252 -4564 * 264 59 0 0 chrX 42255252 42255286 -134718854 + (TC)n Simple_repeat Simple_repeat 1 34 0 495 0 0 0 chrX 42255286 42255341 -134718799 + (TG)n Simple_repeat Simple_repeat 2 56 0 12317 117 32 17 chrX 42255341 42255943 -134718197 + PABL_A-int LTR ERV1 1359 1950 -3996 1578 66 5 9 chrX 42255943 42256155 -134717985 - L1PA7 LINE L1 0 6154 5944 12317 117 32 17 chrX 42256155 42258532 -134715608 + PABL_A-int LTR ERV1 1950 5695 -251 204 40 0 0 chrX 42258532 42258557 -134715583 + (TA)n Simple_repeat Simple_repeat 2 26 0 6991 56 7 0 chrX 42258558 42259826 -134714314 - L1PA7 LINE L1 -19 6135 4860 6715 148 17 13 chrX 42259826 42261079 -134713061 - L1P3 LINE L1 -4036 2425 1168 615 141 0 0 chrX 42261083 42261175 -134712965 - L1P3 LINE L1 -6365 96 5 1648 71 76 4 chrX 42261181 42261419 -134712721 + MER41A-int LTR ERV1 5690 5944 -2 3343 80 9 0 chrX 42261419 42261881 -134712259 + MER41A LTR ERV1 1 466 -88 1743 147 39 6 chrX 42261886 42262219 -134711921 + L1MA8 LINE L1 6957 7300 -12 552 314 41 8 chrX 42262231 42262597 -134711543 - L1MCb LINE L1 -3453 3111 2734 3074 210 23 48 chrX 42262612 42263894 -134710246 - L1MCb LINE L1 -4829 1735 500 20952 169 23 19 chrX 42266399 42271154 -134702986 + L1M1 LINE L1 13 4748 -2817 5919 126 11 6 chrX 42271154 42272481 -134701659 + L1PA13 LINE L1 4812 6163 0 20952 169 23 19 chrX 42272481 42272556 -134701584 + L1M1 LINE L1 4748 4821 -2744 2016 161 0 0 chrX 42272556 42272866 -134701274 + AluSx SINE Alu 1 310 -2 20952 169 23 19 chrX 42272866 42273255 -134700885 + L1M1 LINE L1 4821 5253 -2312 231 219 47 16 chrX 42273255 42273319 -134700821 + MIR SINE MIR 104 169 -93 215 240 135 33 chrX 42273393 42273513 -134700627 - MIR3 SINE MIR -54 154 20 24 67 0 0 chrX 42273765 42273810 -134700330 + AT_rich Low_complexity Low_complexity 1 45 0 681 247 126 17 chrX 42274003 42274234 -134699906 - MIR SINE MIR -2 260 5 459 313 14 27 chrX 42274474 42274621 -134699519 + MIR3 SINE MIR 3 147 -61 865 286 48 66 chrX 42274705 42275083 -134699057 + L1MEd LINE L1 506 876 -5654 27184 39 3 1 chrX 42275084 42279109 -134695031 + L1PA4 LINE L1 2118 6149 -6 2096 263 86 36 chrX 42279099 42280129 -134694011 + L1MEd LINE L1 860 2040 -861 * 2376 81 0 0 chrX 42280179 42280523 -134693617 + AluY SINE Alu 1 311 0 909 263 75 45 chrX 42280968 42281453 -134692687 + L1MEd LINE L1 2384 2886 -3654 422 65 16 0 chrX 42282401 42282463 -134691677 + (TG)n Simple_repeat Simple_repeat 1 63 0 201 121 0 0 chrX 42282711 42282744 -134691396 + (TG)n Simple_repeat Simple_repeat 2 34 0 375 273 45 39 chrX 42283425 42283579 -134690561 + MIR SINE MIR 91 245 -17 529 305 76 76 chrX 42283825 42284140 -134690000 + L2 LINE L2 2945 3259 -13 220 330 0 0 chrX 42284265 42284353 -134689787 + (TA)n Simple_repeat Simple_repeat 1 88 0 592 320 51 75 chrX 42284566 42284636 -134689504 + L2 LINE L2 2461 2531 -741 2069 145 3 0 chrX 42284636 42284932 -134689208 - AluJb SINE Alu -15 297 1 592 320 51 75 chrX 42284932 42285688 -134688452 + L2 LINE L2 2531 3268 -4 288 0 0 0 chrX 42286134 42286166 -134687974 + (GA)n Simple_repeat Simple_repeat 2 33 0 390 181 0 42 chrX 42286221 42286293 -134687847 - Zaphod DNA AcHobo 0 4031 3963 * 522 340 57 57 chrX 42286290 42286608 -134687532 - MER115 DNA AcHobo -266 427 110 327 316 133 5 chrX 42287585 42287781 -134686359 + MIR SINE MIR 38 258 -4 211 307 173 8 chrX 42289411 42289538 -134684602 - L2 LINE L2 -4 3268 3121 222 162 147 44 chrX 42289548 42289616 -134684524 - L2 LINE L2 -3 3269 3195 410 248 137 59 chrX 42290112 42290265 -134683875 - MIR SINE MIR -13 249 85 65 0 0 0 chrX 42290770 42290835 -134683305 + AT_rich Low_complexity Low_complexity 1 65 0 2250 107 3 7 chrX 42290941 42291251 -134682889 + AluSx SINE Alu 1 309 -3 500 269 160 6 chrX 42291716 42291872 -134682268 - MER91A DNA MER1_type -8 188 9 254 325 25 50 chrX 42291869 42291989 -134682151 + MIR SINE MIR 49 165 -97 * 364 273 54 54 chrX 42292334 42292518 -134681622 + MIR3 SINE MIR 7 190 -66 461 294 75 48 chrX 42292689 42292876 -134681264 - MIR3 SINE MIR -10 198 7 343 247 43 11 chrX 42293042 42293135 -134681005 - MIR3 SINE MIR -28 180 85 493 348 124 53 chrX 42293420 42294238 -134679902 + L2 LINE L2 2383 3272 0 275 341 244 24 chrX 42294264 42294510 -134679630 + L3 LINE CR1 1277 1576 -1 334 308 136 28 chrX 42294611 42294825 -134679315 + MIR SINE MIR 20 256 -6 424 260 75 12 chrX 42295873 42296023 -134678117 - MIR3 SINE MIR -64 144 6 769 291 16 24 chrX 42296237 42296488 -134677652 + MIR SINE MIR 9 257 -5 507 295 32 21 chrX 42297766 42297956 -134676184 - MIR SINE MIR -64 198 7 301 267 89 40 chrX 42298001 42298102 -134676038 - MIR SINE MIR -73 135 30 223 341 62 16 chrX 42298247 42298376 -134675764 - L2 LINE L2 0 3272 3138 205 330 36 54 chrX 42298563 42298675 -134675465 - L2 LINE L2 -293 2979 2870 440 342 72 47 chrX 42298962 42299240 -134674900 + L2 LINE L2 2968 3252 -20 206 329 25 19 chrX 42299262 42299420 -134674720 + GA-rich Low_complexity Low_complexity 4 162 0 475 285 39 15 chrX 42299474 42299604 -134674536 + MIR3 SINE MIR 11 143 -65 222 262 16 0 chrX 42299616 42299677 -134674463 + (TAA)n Simple_repeat Simple_repeat 1 62 0 201 323 46 0 chrX 42299750 42299815 -134674325 + L2 LINE L2 3244 3311 -2 598 283 89 27 chrX 42300140 42300531 -134673609 + L1MCa LINE L1 51 424 -5999 4217 208 119 67 chrX 42300915 42301247 -134672893 + L1MCa LINE L1 1148 1461 -5480 1106 168 35 0 chrX 42301247 42301449 -134672691 - L1PA16 LINE L1 -1 6165 5957 4217 208 119 67 chrX 42301449 42302913 -134671227 + L1MCa LINE L1 1461 3038 -3903 291 71 0 0 chrX 42303405 42303447 -134670693 + (TCTCCC)n Simple_repeat Simple_repeat 3 44 0 6352 232 94 22 chrX 42303744 42304077 -134670063 + L1PB2 LINE L1 775 1083 -5328 8195 19 5 0 chrX 42304077 42305190 -134668950 + L1PA3 LINE L1 5040 6155 0 6352 232 94 22 chrX 42305190 42305821 -134668319 + L1PB2 LINE L1 1083 1667 -4744 2198 140 12 93 chrX 42305821 42306250 -134667890 + MSTD LTR MaLR 1 394 -2 6352 232 94 22 chrX 42306250 42306614 -134667526 + L1PB2 LINE L1 1667 2003 -4408 2092 141 0 0 chrX 42306614 42306918 -134667222 - AluSx SINE Alu -8 304 1 6352 232 94 22 chrX 42306918 42307049 -134667091 + L1PB2 LINE L1 2003 2123 -4288 24139 31 1 1 chrX 42307049 42310551 -134663589 - L1PA3 LINE L1 -3 6152 2650 6352 232 94 22 chrX 42310551 42312350 -134661790 + L1PB2 LINE L1 2123 6411 0 8125 194 120 76 chrX 42312355 42314108 -134660032 + L1MD3 LINE L1 4700 6374 -1621 357 82 0 0 chrX 42314108 42314157 -134659983 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 8125 194 120 76 chrX 42314157 42314543 -134659597 + L1MD3 LINE L1 6374 6742 -1253 2000 155 42 9 chrX 42314543 42314878 -134659262 + L1MC1 LINE L1 5987 6332 -1 8125 194 120 76 chrX 42314878 42315235 -134658905 + L1MD3 LINE L1 6742 7082 -913 646 214 8 0 chrX 42315235 42315361 -134658779 + MLT1F1 LTR MaLR 5 131 -436 8125 194 120 76 chrX 42315361 42315897 -134658243 + L1MD3 LINE L1 7082 7985 -10 434 253 97 26 chrX 42316145 42316299 -134657841 + L1MEd LINE L1 438 602 -5952 1996 227 45 61 chrX 42316390 42316993 -134657147 + MLT1E LTR MaLR 1 593 0 222 37 0 0 chrX 42317024 42317051 -134657089 + (CA)n Simple_repeat Simple_repeat 2 28 0 301 238 33 90 chrX 42317283 42317405 -134656735 + L1MEd LINE L1 851 965 -5589 414 0 0 0 chrX 42317420 42317466 -134656674 + (CA)n Simple_repeat Simple_repeat 2 47 0 781 273 41 43 chrX 42317477 42318382 -134655758 + L1MEd LINE L1 1168 2160 -4585 581 254 18 14 chrX 42318438 42318623 -134655517 + L1MEd LINE L1 10 156 -5889 1657 260 44 19 chrX 42318695 42319131 -134655009 + L1MEd LINE L1 3767 4225 -2339 1524 176 109 10 chrX 42319131 42319444 -134654696 - MER2 DNA MER2_type 0 344 1 1657 260 44 19 chrX 42319444 42319642 -134654498 + L1MEd LINE L1 4225 4417 -2147 917 182 164 17 chrX 42319661 42319892 -134654248 - MER93b LTR ERV1 -28 345 81 5947 96 16 16 chrX 42319892 42320753 -134653387 - L1PA13 LINE L1 -28 6135 5275 1075 243 30 32 chrX 42320751 42321089 -134653051 + L1MEd LINE L1 4407 4743 -1821 * 2544 232 37 49 chrX 42321094 42321835 -134652305 + L1ME LINE L1 4 802 -6057 1385 215 129 11 chrX 42321860 42322020 -134652120 + L1ME LINE L1 869 1009 -5850 203 0 37 0 chrX 42322020 42322047 -134652093 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1385 215 129 11 chrX 42322047 42322258 -134651882 + L1ME LINE L1 1009 1284 -5575 2581 243 38 41 chrX 42322352 42322882 -134651258 + L1ME LINE L1 2569 3099 -3858 844 142 0 30 chrX 42322882 42323016 -134651124 + FLAM_C SINE Alu 4 133 0 2581 243 38 41 chrX 42323016 42323622 -134650518 + L1ME LINE L1 3099 3678 -3279 * 7485 213 20 42 chrX 42323614 42325631 -134648509 + L1ME LINE L1 3912 5883 -1074 1916 134 48 6 chrX 42325631 42325966 -134648174 + L1MB7 LINE L1 5834 6182 -2 2321 253 119 80 chrX 42325968 42328219 -134645921 + L1ME3A LINE L1 2284 4446 -1700 258 32 0 0 chrX 42328219 42328250 -134645890 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 348 64 0 0 chrX 42328249 42328296 -134645844 + (TG)n Simple_repeat Simple_repeat 2 48 0 2321 253 119 80 chrX 42328250 42328396 -134645744 + L1ME3A LINE L1 4446 4727 -1419 538 251 144 16 chrX 42328393 42328580 -134645560 + L1ME3A LINE L1 5675 5885 -285 * 188 183 100 17 chrX 42328581 42328641 -134645499 - MIR SINE MIR -31 231 167 305 277 48 0 chrX 42328889 42328972 -134645168 - L2 LINE L2 -18 3254 3168 812 273 64 0 chrX 42329004 42329224 -134644916 - MIR SINE MIR -4 258 25 715 264 14 14 chrX 42332219 42332427 -134641713 + MIR SINE MIR 1 208 -54 341 306 102 38 chrX 42332661 42332818 -134641322 - MIR3 SINE MIR -32 176 10 209 262 66 0 chrX 42333052 42333113 -134641027 - MIR SINE MIR -69 139 75 336 352 79 42 chrX 42333408 42333789 -134640351 + L2 LINE L2 2843 3237 -35 214 308 0 56 chrX 42334673 42334780 -134639360 - MIR SINE MIR -82 180 80 490 238 0 16 chrX 42335494 42335616 -134638524 + L1ME LINE L1 6354 6473 -459 302 276 52 15 chrX 42335937 42336071 -134638069 - L2 LINE L2 0 3313 3175 821 249 65 4 chrX 42338526 42338755 -134635385 + MIR SINE MIR 1 243 -19 252 217 113 9 chrX 42339260 42339366 -134634774 + MIR3 SINE MIR 48 164 -44 245 270 131 15 chrX 42340006 42340143 -134633997 + MIR SINE MIR 58 210 -52 294 355 83 28 chrX 42340726 42341162 -134632978 - L2 LINE L2 -2 3270 2811 467 273 106 19 chrX 42341497 42341658 -134632482 + MER5B DNA MER1_type 4 178 0 509 312 44 34 chrX 42342148 42342443 -134631697 + L2 LINE L2 2375 2672 -642 230 267 0 17 chrX 42342611 42342671 -134631469 + L2 LINE L2 3255 3313 0 200 159 23 23 chrX 42342671 42342715 -134631425 + (TGGA)n Simple_repeat Simple_repeat 2 45 0 327 212 168 35 chrX 42343062 42343175 -134630965 + MIR3 SINE MIR 58 185 -23 2114 128 16 0 chrX 42345002 42345308 -134628832 + AluSq SINE Alu 1 311 -2 2662 250 62 21 chrX 42346509 42347653 -134626487 + L2 LINE L2 2126 3310 -3 294 326 62 21 chrX 42347654 42347847 -134626293 - L2 LINE L2 -249 3023 2823 411 183 43 0 chrX 42347905 42347998 -134626142 - Charlie7 DNA MER1_type -5 2607 2511 400 141 141 84 chrX 42348002 42348144 -134625996 - Charlie7 DNA MER1_type -2455 157 8 249 342 180 4 chrX 42348150 42348378 -134625762 - L2 LINE L2 -558 2756 2489 843 219 11 11 chrX 42348590 42348777 -134625363 + MIR SINE MIR 59 245 -17 2396 86 0 19 chrX 42349216 42349529 -134624611 + AluSg SINE Alu 1 307 -3 464 333 56 61 chrX 42349689 42350101 -134624039 + L2 LINE L2 2848 3257 -15 523 189 85 108 chrX 42350939 42351198 -134622942 + MER112 DNA MER1_type 4 256 0 192 40 0 0 chrX 42352645 42352670 -134621470 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 588 65 0 0 chrX 42352669 42352746 -134621394 + (TG)n Simple_repeat Simple_repeat 2 78 0 527 266 106 32 chrX 42353075 42353263 -134620877 - MIR SINE MIR -49 213 12 382 257 52 22 chrX 42353542 42353678 -134620462 - MIR SINE MIR -121 141 2 794 218 48 0 chrX 42353922 42354110 -134620030 + MIR SINE MIR 65 261 -1 207 69 0 0 chrX 42354116 42354145 -134619995 + (CAT)n Simple_repeat Simple_repeat 2 30 0 374 274 9 19 chrX 42354854 42354960 -134619180 - MIR3 SINE MIR 0 208 104 300 366 71 0 chrX 42355166 42355278 -134618862 + L2 LINE L2 3153 3272 0 396 317 143 38 chrX 42355337 42355630 -134618510 - L2 LINE L2 -439 2875 2552 533 340 106 19 chrX 42355673 42356341 -134617799 - L2 LINE L2 -1390 1924 1199 576 335 87 20 chrX 42356452 42356960 -134617180 - L2 LINE L2 -1728 1586 1045 198 242 0 0 chrX 42358146 42358212 -134615928 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 424 301 15 39 chrX 42358289 42358496 -134615644 + MIR SINE MIR 32 236 -26 646 242 38 11 chrX 42358570 42358756 -134615384 - MIR SINE MIR -1 261 71 270 296 0 11 chrX 42358915 42359003 -134615137 + L1ME LINE L1 5528 5614 -507 900 303 80 13 chrX 42359017 42359674 -134614466 + L1MC4a LINE L1 5222 5906 -258 306 0 0 0 chrX 42359901 42359935 -134614205 + (TG)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chrX 42362037 42362064 -134612076 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 2197 94 0 0 chrX 42362064 42362341 -134611799 - AluSg1 SINE Alu -32 277 1 236 353 24 0 chrX 42362927 42363012 -134611128 + MIR3 SINE MIR 3 89 -119 203 88 88 0 chrX 42363505 42363539 -134610601 + L2 LINE L2 3269 3305 -8 206 322 0 56 chrX 42363577 42363757 -134610383 + GA-rich Low_complexity Low_complexity 5 174 0 200 318 14 47 chrX 42363689 42363837 -134610303 + (CAGAGA)n Simple_repeat Simple_repeat 6 148 0 * 300 294 5 33 chrX 42364033 42364217 -134609923 + GA-rich Low_complexity Low_complexity 1 179 0 362 263 0 0 chrX 42364587 42364682 -134609458 + MIR SINE MIR 168 262 0 266 320 39 16 chrX 42364683 42364811 -134609329 + MIR SINE MIR 53 183 -79 831 259 29 17 chrX 42365556 42365795 -134608345 + MIR SINE MIR 20 261 -1 385 307 87 0 chrX 42365892 42366042 -134608098 + MIR3 SINE MIR 30 192 -16 490 252 16 8 chrX 42366096 42366219 -134607921 - MIR SINE MIR -129 133 10 209 146 49 0 chrX 42366918 42366959 -134607181 - MIR SINE MIR -92 116 74 338 301 0 27 chrX 42367252 42367398 -134606742 + GA-rich Low_complexity Low_complexity 1 142 0 311 295 8 8 chrX 42367434 42367556 -134606584 + GA-rich Low_complexity Low_complexity 2 123 0 228 317 62 12 chrX 42367888 42368008 -134606132 + MIR SINE MIR 28 147 -61 218 288 15 0 chrX 42368115 42368181 -134605959 + MIR SINE MIR 170 236 -26 * 941 261 39 0 chrX 42368180 42368414 -134605726 - MIR SINE MIR 0 262 20 207 256 23 35 chrX 42368450 42368536 -134605604 + CT-rich Low_complexity Low_complexity 1 85 0 715 272 68 62 chrX 42368714 42369181 -134604959 - L1MC/D LINE L1 -2021 5787 5318 465 246 156 12 chrX 42369194 42369361 -134604779 + MIR SINE MIR 2 192 -70 339 289 0 0 chrX 42369425 42369501 -134604639 - L2 LINE L2 0 3272 3197 251 322 47 86 chrX 42369598 42369831 -134604309 + L2 LINE L2 2958 3181 -91 257 263 0 13 chrX 42370485 42370561 -134603579 - L1ME LINE L1 -413 5708 5634 469 174 0 0 chrX 42370563 42370655 -134603485 - L1MB8 LINE L1 -26 6152 6061 3087 96 29 18 chrX 42371402 42371444 -134602696 - MLT2A2 LTR ERVL 0 453 413 180 0 0 0 chrX 42371444 42371464 -134602676 + (CA)n Simple_repeat Simple_repeat 2 21 0 3087 96 29 18 chrX 42371464 42371485 -134602655 - MLT2A2 LTR ERVL -40 413 394 312 120 0 0 chrX 42371485 42371535 -134602605 + (TA)n Simple_repeat Simple_repeat 2 51 0 3087 96 29 18 chrX 42371535 42371918 -134602222 - MLT2A2 LTR ERVL -59 394 1 287 373 44 6 chrX 42372067 42372225 -134601915 - L2 LINE L2 -219 3053 2890 735 257 69 0 chrX 42372338 42372513 -134601627 + MIR SINE MIR 11 197 -65 6125 23 0 0 chrX 42372516 42373263 -134600877 - L1PA4 LINE L1 -1500 4646 3900 7659 25 1 0 chrX 42373263 42374774 -134599366 + L1PA4 LINE L1 4644 6155 0 26 74 0 0 chrX 42375442 42375496 -134598644 + AT_rich Low_complexity Low_complexity 1 54 0 260 309 8 73 chrX 42375497 42375562 -134598578 - L2 LINE L2 -682 2632 2577 2556 148 29 7 chrX 42375562 42376009 -134598131 - MER65C LTR ERV1 -4 457 1 260 309 8 73 chrX 42376009 42376066 -134598074 - L2 LINE L2 -737 2577 2518 820 109 0 0 chrX 42376067 42376195 -134597945 + L1MB3 LINE L1 5704 5831 -352 304 241 80 0 chrX 42376448 42376560 -134597580 - MIR SINE MIR -122 140 20 2616 48 6 6 chrX 42376850 42377185 -134596955 - L1PA5 LINE L1 0 6154 5820 1978 126 45 14 chrX 42377185 42377542 -134596598 + L1MB3 LINE L1 5814 6181 -2 2498 69 0 0 chrX 42377785 42378090 -134596050 - AluY SINE Alu -6 305 1 5821 163 34 12 chrX 42378585 42379117 -134595023 + L1PB1 LINE L1 3960 4478 -1673 2517 18 0 0 chrX 42379117 42379393 -134594747 + AluYa5 SINE Alu 36 311 0 5821 163 34 12 chrX 42379393 42380395 -134593745 + L1PB1 LINE L1 4478 5555 -596 2008 100 11 4 chrX 42380395 42380712 -134593428 + AluSp SINE Alu 1 319 0 5821 163 34 12 chrX 42380712 42381323 -134592817 + L1PB1 LINE L1 5555 6151 0 449 318 81 67 chrX 42382560 42382803 -134591337 - L2 LINE L2 0 3272 3034 228 100 0 0 chrX 42382803 42382843 -134591297 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2215 100 0 0 chrX 42382843 42383123 -134591017 - AluSx SINE Alu -32 280 1 449 318 81 67 chrX 42383123 42383161 -134590979 - L2 LINE L2 -237 3035 2986 335 382 19 19 chrX 42383269 42383481 -134590659 - L2 LINE L2 -411 2903 2692 23308 25 33 0 chrX 42383644 42387377 -134586763 - L1PA4 LINE L1 -3 6152 2292 858 212 9 4 chrX 42387481 42387707 -134586433 - L1 LINE L1 -3570 2576 2350 4241 133 10 28 chrX 42387714 42388492 -134585648 - L1PA8A LINE L1 -4 6144 5395 2916 147 4 7 chrX 42388499 42389042 -134585098 - L1PA8A LINE L1 -3766 2380 1840 * 6672 34 0 0 chrX 42389036 42389866 -134584274 - L1P LINE L1 -1888 4258 3429 200 338 0 0 chrX 42390069 42390149 -134583991 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 1481 164 118 12 chrX 42390899 42391229 -134582911 - MLT1A1 LTR MaLR 0 365 1 669 340 20 73 chrX 42392606 42393015 -134581125 - L2 LINE L2 -61 3211 2825 3957 67 0 10 chrX 42393515 42394035 -134580105 - L1PA7 LINE L1 -3 6151 5637 1453 190 14 3 chrX 42394434 42394718 -134579422 + AluJb SINE Alu 1 287 -25 22854 51 5 0 chrX 42395094 42398070 -134576070 - L1P LINE L1 -3153 2993 4 3316 81 11 0 chrX 42398225 42398670 -134575470 + L1PA10 LINE L1 5718 6167 -1 456 267 89 22 chrX 42398673 42398853 -134575287 - L1ME3A LINE L1 -12 6158 5967 2110 115 16 10 chrX 42399063 42399367 -134574773 + AluSc SINE Alu 1 306 -3 2059 122 4 0 chrX 42400206 42400485 -134573655 + AluSx SINE Alu 1 280 -32 781 308 170 45 chrX 42400725 42401384 -134572756 - L2 LINE L2 -564 2750 2010 272 185 74 86 chrX 42401580 42401661 -134572479 - MER91C DNA MER1_type -30 110 31 2128 145 27 14 chrX 42402568 42402934 -134571206 + THE1C LTR MaLR 1 371 -4 9881 107 45 26 chrX 42402940 42404429 -134569711 + THE1C-int LTR MaLR 4 1525 -55 1954 138 47 0 chrX 42404429 42404727 -134569413 + AluSx SINE Alu 1 312 0 9881 107 45 26 chrX 42404727 42404785 -134569355 + THE1C-int LTR MaLR 1525 1580 0 1079 144 16 21 chrX 42404786 42404974 -134569166 + THE1C LTR MaLR 2 188 -187 1097 120 27 154 chrX 42404988 42405240 -134568900 + THE1C LTR MaLR 115 326 -49 2009 50 92 8 chrX 42405240 42405523 -134568617 - AluY SINE Alu 0 305 1 1097 120 27 154 chrX 42405523 42405568 -134568572 + THE1C LTR MaLR 326 375 0 204 250 76 76 chrX 42406688 42406780 -134567360 + MIR SINE MIR 58 149 -113 4939 54 76 1 chrX 42407070 42407742 -134566398 - LTR30 LTR ERV1 0 722 1 180 0 0 0 chrX 42408061 42408081 -134566059 + (TTA)n Simple_repeat Simple_repeat 2 21 0 207 0 0 0 chrX 42408616 42408639 -134565501 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chrX 42409907 42409930 -134564210 + (TAAAAA)n Simple_repeat Simple_repeat 3 25 0 518 256 96 19 chrX 42410469 42410625 -134563515 - MIR SINE MIR -67 195 28 180 179 0 0 chrX 42410795 42410834 -134563306 + (CATA)n Simple_repeat Simple_repeat 4 42 0 207 0 0 0 chrX 42411662 42411685 -134562455 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chrX 42411844 42411870 -134562270 + AT_rich Low_complexity Low_complexity 1 26 0 340 261 61 17 chrX 42411954 42412069 -134562071 + L1ME LINE L1 5705 5824 -297 346 140 58 3 chrX 42412090 42412186 -134561954 + MER4B-int LTR ERV1 1280 1769 -4989 26 0 0 0 chrX 42412318 42412344 -134561796 + AT_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chrX 42412484 42412505 -134561635 + (T)n Simple_repeat Simple_repeat 1 21 0 272 232 54 36 chrX 42412777 42412889 -134561251 + L1ME LINE L1 5711 5824 -297 270 148 123 12 chrX 42412910 42412991 -134561149 + LTR57-int LTR ERVL 1317 1406 -3937 * 7486 136 56 49 chrX 42412928 42415081 -134559059 + MER4-int LTR ERV1 1687 4931 -1667 2244 151 3 6 chrX 42415081 42415419 -134558721 - MER1B DNA MER1_type 0 337 1 7486 136 56 49 chrX 42415419 42415495 -134558645 + MER4-int LTR ERV1 4931 5005 -1593 1889 149 46 0 chrX 42415595 42415923 -134558217 + MER41C LTR ERV1 212 554 0 696 158 0 86 chrX 42415923 42416073 -134558067 - MSTA LTR MaLR -126 302 166 323 275 54 12 chrX 42416073 42416240 -134557900 - L1M4 LINE L1 -3739 2407 2234 1750 104 6 79 chrX 42416917 42417235 -134556905 + THE1B LTR MaLR 70 364 0 290 167 17 0 chrX 42417350 42417410 -134556730 + CT-rich Low_complexity Low_complexity 3 63 0 4125 127 66 14 chrX 42417477 42418145 -134555995 - L1PA12 LINE L1 0 6168 5466 1169 251 47 0 chrX 42418224 42418543 -134555597 - L1MCc LINE L1 -6073 350 17 452 281 91 25 chrX 42418612 42418811 -134555329 + MER58C DNA MER1_type 1 212 -3 1452 176 103 86 chrX 42419015 42419552 -134554588 + MER66A LTR ERV1 97 478 0 208 50 0 50 chrX 42420794 42420834 -134553306 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2216 106 0 0 chrX 42420841 42421125 -134553015 + AluSg SINE Alu 3 286 -24 1506 229 61 24 chrX 42421379 42421843 -134552297 + MER110A LTR ERV1 19 479 -2 1241 166 12 20 chrX 42422144 42422391 -134551749 + AluJo SINE Alu 45 289 -23 189 0 0 0 chrX 42422520 42422541 -134551599 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1954 141 3 3 chrX 42422733 42423032 -134551108 - AluSx SINE Alu -12 300 2 658 310 27 54 chrX 42425710 42426078 -134548062 + L2 LINE L2 2806 3163 -150 2506 30 0 33 chrX 42426695 42426995 -134547145 - AluY SINE Alu -12 299 10 347 319 58 19 chrX 42427044 42427251 -134546889 - MIR SINE MIR -4 258 44 2173 205 188 12 chrX 42427495 42428081 -134546059 + L1MD2 LINE L1 5657 6345 -14 2195 102 20 3 chrX 42429352 42429655 -134544485 + AluSc SINE Alu 1 308 -1 451 262 150 11 chrX 42430187 42430374 -134543766 - MIR SINE MIR -1 261 49 318 238 0 0 chrX 42430801 42430864 -134543276 + L1MA4 LINE L1 1241 1303 -5262 * 3770 195 14 39 chrX 42430861 42431939 -134542201 + L1MA4 LINE L1 3239 4300 -3265 7861 39 0 0 chrX 42431963 42432983 -134541157 - L1PA5 LINE L1 -5 6149 5130 2889 50 0 0 chrX 42432983 42433340 -134540800 + L1P LINE L1 4629 4985 -1161 1038 172 15 0 chrX 42433371 42433574 -134540566 + L1MA4 LINE L1 4377 4582 -2983 775 177 38 0 chrX 42433549 42433707 -134540433 + L1MA4 LINE L1 5884 6047 -1518 * 1866 149 58 9 chrX 42433703 42434045 -134540095 + L1MA4 LINE L1 7081 7439 -280 360 163 35 12 chrX 42434055 42434141 -134539999 + L1MB4 LINE L1 6093 6180 0 359 149 59 41 chrX 42434675 42434777 -134539363 + L1MA8 LINE L1 5573 5661 -639 1612 115 56 28 chrX 42435417 42435705 -134538435 + L1MA8 LINE L1 5778 6073 -218 1189 71 0 0 chrX 42435706 42435860 -134538280 + MER41A LTR ERV1 401 554 0 5545 137 53 15 chrX 42435862 42436917 -134537223 + MER41A-int LTR ERV1 1 1091 -4855 222 37 0 0 chrX 42436917 42436944 -134537196 + (TG)n Simple_repeat Simple_repeat 2 28 0 1345 100 61 64 chrX 42436944 42437211 -134536929 + MER41A-int LTR ERV1 1359 3715 -4101 * 3504 237 51 5 chrX 42437206 42437792 -134536348 + MER41A-int LTR ERV1 5331 5943 -3 3611 86 0 2 chrX 42437793 42438261 -134535879 + MER41A LTR ERV1 1 467 -87 969 122 44 17 chrX 42438264 42438444 -134535696 + L1MA8 LINE L1 6059 6243 -48 2949 186 38 36 chrX 42438488 42439064 -134535076 + LTR22 LTR ERVK 1 577 -3 683 132 0 0 chrX 42439099 42439190 -134534950 + FLAM_A SINE Alu 36 126 -16 23 0 0 0 chrX 42439231 42439254 -134534886 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 42439367 42439388 -134534752 + AT_rich Low_complexity Low_complexity 1 21 0 849 226 43 24 chrX 42439969 42440177 -134533963 + MIR SINE MIR 22 233 -29 1123 125 0 0 chrX 42441407 42441567 -134532573 + AluSg/x SINE Alu 121 280 -32 403 136 49 0 chrX 42441872 42441953 -134532187 - MIR SINE MIR -81 181 97 783 233 92 29 chrX 42442958 42443268 -134530872 + LTR30 LTR ERV1 105 399 -94 279 203 0 0 chrX 42443954 42444013 -134530127 + (CTA)n Simple_repeat Simple_repeat 1 59 0 396 304 13 25 chrX 42444101 42444259 -134529881 - MIR SINE MIR -106 156 1 820 242 146 55 chrX 42444510 42445059 -134529081 - MLT1F1 LTR MaLR 0 595 1 1924 155 3 0 chrX 42445186 42445476 -134528664 + AluJb SINE Alu 3 293 -19 341 277 36 15 chrX 42445479 42445636 -134528504 + L1MC/D LINE L1 5645 5802 -319 6008 126 28 45 chrX 42445986 42446708 -134527432 + MER4A-int LTR ERV1 5510 6208 -390 2862 7 0 0 chrX 42446708 42447014 -134527126 - AluYa5 SINE Alu -5 306 1 6008 126 28 45 chrX 42447014 42447395 -134526745 + MER4A-int LTR ERV1 6208 6594 -4 4862 91 7 46 chrX 42447404 42448095 -134526045 + MER4A LTR ERV1 1 664 0 25 0 0 0 chrX 42448111 42448136 -134526004 + AT_rich Low_complexity Low_complexity 1 25 0 2480 63 0 28 chrX 42448165 42448484 -134525656 - AluY SINE Alu -1 310 1 804 178 0 0 chrX 42448944 42449073 -134525067 - FRAM SINE Alu -10 166 38 277 211 28 28 chrX 42450308 42450379 -134523761 + L2 LINE L2 3236 3306 -7 2379 82 0 31 chrX 42450756 42451075 -134523065 - AluSg SINE Alu -1 309 1 2004 105 10 7 chrX 42452073 42452367 -134521773 + AluSx SINE Alu 1 295 -17 2125 104 34 6 chrX 42453191 42453518 -134520622 + L1MA4 LINE L1 5965 6300 0 370 209 27 55 chrX 42455002 42455112 -134519028 - L2 LINE L2 -5 3308 3202 231 280 130 42 chrX 42456409 42456648 -134517492 + L2 LINE L2 763 1022 -2292 364 295 153 28 chrX 42456735 42457023 -134517117 + L2 LINE L2 1323 1646 -1668 1989 148 80 16 chrX 42457289 42457666 -134516474 + MER31A LTR ERV1 85 485 0 268 292 83 8 chrX 42457666 42457786 -134516354 + L2 LINE L2 1545 1673 -1641 837 82 16 16 chrX 42458272 42458392 -134515748 - MSTB LTR MaLR 0 426 307 778 123 174 58 chrX 42458392 42458547 -134515593 + MER41C LTR ERV1 1 173 -381 381 256 30 45 chrX 42459535 42459668 -134514472 + L2 LINE L2 3183 3313 0 189 200 0 100 chrX 42459671 42459697 -134514443 + L2 LINE L2 3142 3162 -110 5536 110 22 12 chrX 42459697 42460000 -134514140 - LTR19C LTR ERV1 0 779 481 183 42 0 0 chrX 42460000 42460024 -134514116 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5536 110 22 12 chrX 42460024 42460491 -134513649 - LTR19C LTR ERV1 -298 481 1 189 200 0 100 chrX 42460491 42460514 -134513626 + L2 LINE L2 3162 3186 -86 870 193 91 58 chrX 42461018 42461254 -134512886 - MER90 LTR ERV1 -6 608 365 5587 149 39 18 chrX 42461254 42462063 -134512077 - MER49 LTR ERV1 0 923 175 1481 226 85 87 chrX 42462063 42462675 -134511465 + LTR36 LTR ERV1 1 611 0 5587 149 39 18 chrX 42462675 42462853 -134511287 - MER49 LTR ERV1 -748 175 2 3687 155 56 26 chrX 42462854 42463533 -134510607 - MER50 LTR ERV1 -23 711 13 574 287 5 36 chrX 42463646 42463841 -134510299 - MER110-int LTR ERV1 -1851 2796 2608 24 0 0 0 chrX 42465334 42465358 -134508782 + AT_rich Low_complexity Low_complexity 1 24 0 200 175 33 25 chrX 42465473 42465593 -134508547 + (TA)n Simple_repeat Simple_repeat 1 121 0 667 289 77 34 chrX 42465656 42465954 -134508186 - Charlie2 DNA MER1_type -2441 341 31 206 214 112 11 chrX 42467024 42467113 -134507027 + MIR SINE MIR 109 206 -56 454 333 12 39 chrX 42467182 42467440 -134506700 + MIR SINE MIR 11 261 -1 1696 133 3 40 chrX 42467762 42468062 -134506078 - L1MA9 LINE L1 -370 5942 5654 1813 176 36 3 chrX 42468062 42468397 -134505743 + L1MA9 LINE L1 5965 6311 -1 22 0 0 0 chrX 42468442 42468464 -134505676 + AT_rich Low_complexity Low_complexity 1 22 0 1807 174 8 65 chrX 42470026 42470504 -134503636 + L1MA7 LINE L1 5757 6207 -84 387 113 0 0 chrX 42470916 42470978 -134503162 + (CA)n Simple_repeat Simple_repeat 1 62 0 191 107 36 89 chrX 42472642 42472698 -134501442 + MER5C DNA MER1_type 267 319 -5 322 231 0 33 chrX 42475389 42475480 -134498660 - MIR SINE MIR -48 214 127 1651 182 5 57 chrX 42475828 42476197 -134497943 - MLT1B LTR MaLR 0 390 41 5286 156 23 22 chrX 42476232 42477532 -134496608 - L1MA7 LINE L1 -4 6287 4984 25 31 0 0 chrX 42477738 42477770 -134496370 + AT_rich Low_complexity Low_complexity 1 32 0 1118 176 5 15 chrX 42477977 42478182 -134495958 - L1PA15 LINE L1 0 6165 5963 15221 144 24 10 chrX 42478195 42482822 -134491318 - L1MA3 LINE L1 0 7724 3019 2342 121 0 0 chrX 42482822 42483135 -134491005 - AluSq SINE Alu 0 313 1 15221 144 24 10 chrX 42483135 42483781 -134490359 - L1MA3 LINE L1 -4705 3019 2383 29332 99 15 22 chrX 42483805 42490260 -134483880 - L1PA7 LINE L1 -4 6465 6 1942 212 13 2 chrX 42490275 42490737 -134483403 - L1P LINE L1 -1490 4656 4190 503 346 71 18 chrX 42490777 42491282 -134482858 + L1M4 LINE L1 4388 4919 -1227 239 299 127 13 chrX 42493342 42493499 -134480641 + MIR3 SINE MIR 33 207 -1 2459 64 0 0 chrX 42493698 42493994 -134480146 - AluY SINE Alu -15 296 1 1061 201 43 74 chrX 42502373 42502672 -134471468 + AluJo SINE Alu 1 290 -12 930 182 131 28 chrX 42502729 42502815 -134471325 + MER21B LTR ERV1 1 77 -786 2027 104 0 0 chrX 42502815 42503074 -134471066 - AluSc SINE Alu -14 295 37 930 182 131 28 chrX 42503074 42503201 -134470939 + MER21B LTR ERV1 77 236 -627 925 218 46 18 chrX 42503214 42503498 -134470642 - HERVL68 LTR ERVL -910 2127 1836 659 291 54 52 chrX 42503521 42503749 -134470391 - HERVL68 LTR ERVL -2281 756 530 1561 185 7 7 chrX 42503749 42504036 -134470104 - AluJo SINE Alu -25 287 1 659 291 54 52 chrX 42504036 42504469 -134469671 - HERVL68 LTR ERVL -2507 530 9 272 119 0 0 chrX 42504521 42504563 -134469577 - MER77 LTR ERV1 0 605 564 470 279 155 9 chrX 42504595 42504821 -134469319 + L2 LINE L2 1525 1783 -1531 279 273 61 0 chrX 42504848 42504947 -134469193 + L1M4 LINE L1 4639 4743 -1403 35 41 0 0 chrX 42504947 42504996 -134469144 + AT_rich Low_complexity Low_complexity 1 49 0 396 206 144 7 chrX 42505024 42505170 -134468970 + L1M4 LINE L1 4751 4916 -1230 248 361 47 26 chrX 42505364 42505555 -134468585 + L2 LINE L2 3078 3272 0 563 336 52 11 chrX 42505670 42505956 -134468184 + REP3 LTR ERV 3 300 -262 251 300 48 14 chrX 42506357 42506567 -134467573 + MER113 DNA MER1_type? 11 227 -294 297 367 41 6 chrX 42506639 42506808 -134467332 - MIR SINE MIR -62 200 26 1410 155 43 19 chrX 42506967 42507225 -134466915 - MER21B LTR ERV1 -422 441 178 3848 217 6 26 chrX 42507286 42508115 -134466025 - L1 LINE L1 -3007 3841 3040 2213 103 7 10 chrX 42508115 42508415 -134465725 + AluSq SINE Alu 1 299 -14 3848 217 6 26 chrX 42508415 42508679 -134465461 - L1 LINE L1 -3808 3040 2772 3077 170 35 13 chrX 42508660 42509341 -134464799 - L1PBa LINE L1 -4118 2745 2050 * 382 123 386 9 chrX 42509693 42509807 -134464333 - MER4C LTR ERV1 -18 447 291 1430 148 55 49 chrX 42509935 42510279 -134463861 - MER4A LTR ERV1 -318 346 1 15571 99 54 22 chrX 42510295 42512451 -134461689 - MER4A-int LTR ERV1 -4 6594 4335 2440 76 3 0 chrX 42512451 42512752 -134461388 + AluY SINE Alu 1 302 -9 15571 99 54 22 chrX 42512752 42513268 -134460872 - MER4A-int LTR ERV1 -2263 4335 3837 416 152 18 30 chrX 42513261 42513422 -134460718 - MER4A-int LTR ERV1 -2911 3687 3438 * 971 80 0 16 chrX 42513424 42513549 -134460591 + AluSq/x SINE Alu 13 135 -177 2044 133 0 10 chrX 42513549 42513843 -134460297 + AluSx SINE Alu 1 291 -21 2972 127 90 8 chrX 42513843 42514496 -134459644 - MER4A-int LTR ERV1 -3154 3444 2738 1145 129 147 4 chrX 42514497 42514722 -134459418 + LTR8 LTR ERV1 1 257 -434 1151 102 10 0 chrX 42514722 42514919 -134459221 - MER4A-int LTR ERV1 -4103 2495 2297 * 3376 127 15 54 chrX 42514918 42515602 -134458538 - MER4A-int LTR ERV1 -3762 1253 597 6086 40 0 0 chrX 42515608 42516337 -134457803 - L1PA3 LINE L1 -3 6152 5424 211 259 19 0 chrX 42516346 42516400 -134457740 - L2 LINE L2 -518 2796 2742 25 0 0 0 chrX 42516415 42516440 -134457700 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 42516740 42516768 -134457372 + AT_rich Low_complexity Low_complexity 1 28 0 255 224 0 0 chrX 42516886 42516935 -134457205 - L1MD2 LINE L1 -88 6271 6223 4757 130 124 52 chrX 42517060 42518167 -134455973 - MER4A-int LTR ERV1 -5411 1187 1 1906 143 5 41 chrX 42518169 42518523 -134455617 - MER4A LTR ERV1 0 664 261 600 96 53 11 chrX 42518523 42518617 -134455523 - MER4A LTR ERV1 -566 98 1 1126 98 0 0 chrX 42518617 42518760 -134455380 + MER4B LTR ERV1 468 610 0 1160 194 90 11 chrX 42518760 42519038 -134455102 - MER4A-int LTR ERV1 -118 6213 5914 618 202 32 3 chrX 42519033 42519197 -134454943 - LTR49-int LTR ERV1 -406 5790 4351 * 4226 129 16 49 chrX 42519274 42519966 -134454174 - LTR8 LTR ERV1 -22 669 1 4102 146 80 8 chrX 42519972 42520726 -134453414 - LTR49-int LTR ERV1 -682 5649 4842 213 228 0 53 chrX 42522120 42522177 -134451963 + (CATA)n Simple_repeat Simple_repeat 2 55 0 741 206 82 24 chrX 42522202 42522372 -134451768 + MLT2B1 LTR ERVL 298 477 -43 279 0 0 0 chrX 42522374 42522405 -134451735 + (CA)n Simple_repeat Simple_repeat 2 32 0 1688 256 50 20 chrX 42522405 42522967 -134451173 + L1M4 LINE L1 4070 4648 -1498 982 109 0 13 chrX 42523046 42523202 -134450938 + MER41B LTR ERV1 482 635 0 267 122 365 14 chrX 42523204 42523278 -134450862 + MER41B-int LTR ERV1 3 102 -5844 4423 132 33 16 chrX 42523287 42524002 -134450138 + MER41B-int LTR ERV1 1 637 -5309 841 119 16 0 chrX 42524003 42524129 -134450011 - AluSc SINE Alu -5 304 177 964 64 0 16 chrX 42524234 42524359 -134449781 - AluSc SINE Alu -186 123 1 4264 157 101 19 chrX 42524359 42525424 -134448716 + MER41B-int LTR ERV1 630 1974 -3972 309 98 59 0 chrX 42525441 42525492 -134448648 + MER41B-int LTR ERV1 2167 2220 -3726 * 1559 114 8 17 chrX 42525488 42525725 -134448415 + MER41B-int LTR ERV1 3355 3589 -3948 10859 87 1 1 chrX 42525727 42527159 -134446981 + L1P LINE L1 2 1433 -4713 14343 38 19 2 chrX 42527159 42529562 -134444578 + L1PA4 LINE L1 3720 6149 -6 2522 163 57 10 chrX 42529562 42530052 -134444088 + MER41B-int LTR ERV1 3697 4209 -3607 897 159 0 0 chrX 42530053 42530185 -134443955 - AluSp/q SINE Alu -21 292 161 1702 117 0 0 chrX 42530187 42530417 -134443723 - AluSq SINE Alu -82 231 2 2189 110 29 29 chrX 42530432 42530808 -134443332 + MER41-int LTR ERV1 1727 3461 -2485 1017 291 40 2 chrX 42530908 42531306 -134442834 - L1M4 LINE L1 -1846 4300 3888 2355 60 39 0 chrX 42531307 42531592 -134442548 - AluSg SINE Alu -14 296 1 313 299 43 48 chrX 42531592 42531779 -134442361 - HAL1 LINE L1 -1206 1301 1116 1864 195 25 25 chrX 42533110 42533510 -134440630 - L1P LINE L1 -1103 5043 4644 22191 98 11 2 chrX 42533520 42537595 -134436545 - L1PA8 LINE L1 0 6172 2061 15223 43 5 1 chrX 42537606 42540149 -134433991 - L1PA5 LINE L1 0 6154 3605 225 80 40 20 chrX 42541538 42541588 -134432552 + (TA)n Simple_repeat Simple_repeat 2 52 0 338 80 13 40 chrX 42541637 42541712 -134432428 + (TA)n Simple_repeat Simple_repeat 2 74 0 203 250 71 0 chrX 42541750 42541806 -134432334 - MIR SINE MIR -118 144 85 23 33 0 0 chrX 42542562 42542592 -134431548 + AT_rich Low_complexity Low_complexity 1 30 0 284 146 0 0 chrX 42542760 42542801 -134431339 + 5S rRNA rRNA 2 42 -79 496 254 60 19 chrX 42542893 42543210 -134430930 - L1MC4 LINE L1 0 8042 7620 585 242 0 0 chrX 42543310 42543438 -134430702 - L1MC4 LINE L1 -402 7640 7513 246 261 183 35 chrX 42543458 42543573 -134430567 - L2 LINE L2 -5 3267 3136 193 326 79 0 chrX 42544357 42544446 -134429694 + MIR SINE MIR 50 145 -63 300 309 73 7 chrX 42544684 42544820 -134429320 + L1M4 LINE L1 2990 3134 -3012 180 176 0 0 chrX 42545245 42545279 -134428861 + CT-rich Low_complexity Low_complexity 4 37 0 26595 73 3 0 chrX 42546069 42549481 -134424659 - L1P LINE L1 -2722 3424 3 10668 149 30 40 chrX 42549482 42551828 -134422312 - L1P3 LINE L1 -4071 2390 24 1968 113 3 3 chrX 42551842 42552135 -134422005 - L1PA15-16 LINE L1 -4145 2704 2412 6195 165 16 12 chrX 42552268 42553305 -134420835 - L1PA15-16 LINE L1 -4893 1956 916 319 305 21 43 chrX 42553449 42553590 -134420550 + MER5A DNA MER1_type 7 144 -45 203 355 43 14 chrX 42553630 42553768 -134420372 + L2 LINE L2 2907 3048 -224 709 271 33 41 chrX 42554202 42554446 -134419694 - MIR SINE MIR -18 244 3 324 301 173 0 chrX 42555428 42555561 -134418579 - MIR SINE MIR -2 260 105 264 100 0 0 chrX 42555745 42555785 -134418355 + (TC)n Simple_repeat Simple_repeat 1 40 0 187 314 289 0 chrX 42557341 42557462 -134416678 + MIR3 SINE MIR 47 202 -6 180 277 231 0 chrX 42557648 42557778 -134416362 + MIR SINE MIR 31 190 -72 232 191 43 0 chrX 42557808 42557855 -134416285 - MLT2D LTR ERVL 0 414 366 610 217 0 0 chrX 42559018 42559124 -134415016 + MLT1E LTR MaLR 1 106 -487 10205 171 16 7 chrX 42559136 42562226 -134411914 - L1PB1 LINE L1 -2 7109 4177 4307 195 26 13 chrX 42562226 42563280 -134410860 - L1MD1 LINE L1 -163 6473 5400 * 28342 50 3 1 chrX 42563254 42567541 -134406599 - L1PA5 LINE L1 -1 6547 2253 620 155 10 0 chrX 42567539 42567636 -134406504 + L1P LINE L1 553 650 -5496 * 558 146 0 0 chrX 42567679 42567761 -134406379 - AluSg/x SINE Alu -16 294 213 2077 256 53 5 chrX 42567761 42568397 -134405743 - L1MD1 LINE L1 -1444 5096 4430 3093 209 74 62 chrX 42568409 42569521 -134404619 - L1PB1 LINE L1 -5904 1126 2 3662 250 47 14 chrX 42569538 42570764 -134403376 - L1MD1 LINE L1 -2629 3911 2646 7045 212 90 27 chrX 42570865 42572983 -134401157 - L1MD1 LINE L1 -4171 2369 18 1410 266 110 20 chrX 42572984 42573438 -134400702 + MLT1E LTR MaLR 99 593 0 378 337 89 36 chrX 42574387 42574950 -134399190 + L2 LINE L2 2589 3180 -92 559 291 46 30 chrX 42575312 42575529 -134398611 - MIR SINE MIR -6 256 37 214 281 23 47 chrX 42575634 42575762 -134398378 + L2 LINE L2 2862 2986 -286 214 299 52 13 chrX 42575874 42575951 -134398189 - MIR SINE MIR -131 131 52 1827 224 122 28 chrX 42576045 42576514 -134397626 + MLT2B2 LTR ERVL 1 513 -2 257 319 35 26 chrX 42576516 42576629 -134397511 - MER117 DNA MER1_type -75 122 9 463 236 209 7 chrX 42577097 42577245 -134396895 - MER5A DNA MER1_type 0 189 12 229 260 57 57 chrX 42577514 42577637 -134396503 - MIR SINE MIR -138 124 2 288 303 167 25 chrX 42577825 42577987 -134396153 - MIR SINE MIR -47 215 31 211 256 35 47 chrX 42578296 42578382 -134395758 - L2 LINE L2 0 3272 3188 340 319 25 44 chrX 42579633 42579793 -134394347 - MIR3 SINE MIR -35 173 17 276 234 52 13 chrX 42580991 42581068 -134393072 + MIR SINE MIR 66 145 -117 2486 87 7 0 chrX 42581086 42581426 -134392714 + AluSx SINE Alu 1 342 0 325 275 83 17 chrX 42581715 42581835 -134392305 - L2 LINE L2 -9 3263 3136 193 245 53 43 chrX 42581874 42581968 -134392172 - L2 LINE L2 -677 2637 2543 189 272 123 12 chrX 42581989 42582070 -134392070 + L2 LINE L2 3188 3277 -36 380 294 17 4 chrX 42582346 42582469 -134391671 + MIR SINE MIR 15 141 -67 2470 93 0 0 chrX 42583303 42583614 -134390526 - AluSq SINE Alu -2 311 1 1355 174 19 0 chrX 42584129 42584399 -134389741 - L1MA7 LINE L1 0 6291 6017 1243 274 102 42 chrX 42584694 42585153 -134388987 + MLT1G1 LTR MaLR 66 559 -36 3632 83 2 13 chrX 42585153 42585610 -134388530 + MLT2A2 LTR ERVL 1 452 -1 1243 274 102 42 chrX 42585610 42585650 -134388490 + MLT1G1 LTR MaLR 559 595 0 299 278 21 21 chrX 42586204 42586301 -134387839 + LTR67 LTR ERVL 457 553 -4 245 287 130 27 chrX 42586826 42587049 -134387091 + L1PBb LINE L1 1 246 -6603 2676 107 136 7 chrX 42587176 42587587 -134386553 - MER4C LTR ERV1 -1 464 1 813 264 25 51 chrX 42588544 42588925 -134385215 + L1PBb LINE L1 1418 1863 -4975 8525 159 17 25 chrX 42588938 42590450 -134383690 + L1P LINE L1 11 1511 -4635 19478 43 1 0 chrX 42590450 42593484 -134380656 + L1PA4 LINE L1 3110 6153 -2 7854 235 57 17 chrX 42593484 42594239 -134379901 - L1MA7 LINE L1 -180 6315 5592 2393 97 0 0 chrX 42594239 42594548 -134379592 + AluY SINE Alu 1 309 -2 7854 235 57 17 chrX 42594548 42597131 -134377009 - L1MA7 LINE L1 -903 5592 2745 678 320 30 79 chrX 42597130 42597624 -134376516 - L1MA7 LINE L1 -5187 1094 625 * 2886 262 13 19 chrX 42597641 42598343 -134375797 - L1MA7 LINE L1 -5580 701 4 12929 133 34 33 chrX 42599162 42600028 -134374112 - HUERS-P1 LTR ERV1 -1328 3552 2689 2073 125 14 0 chrX 42600028 42600325 -134373815 + AluJo SINE Alu 5 305 -7 12929 133 34 33 chrX 42600325 42602118 -134372022 - HUERS-P1 LTR ERV1 -2191 2689 766 3714 152 119 41 chrX 42602115 42602588 -134371552 - HUERS-P1 LTR ERV1 -5042 1221 1022 * 351 0 0 0 chrX 42602588 42602627 -134371513 + (GA)n Simple_repeat Simple_repeat 2 40 0 3714 152 119 41 chrX 42602627 42603352 -134370788 - HUERS-P1 LTR ERV1 -5241 1022 355 483 288 73 40 chrX 42603448 42603625 -134370515 - HUERS-P1 LTR ERV1 -6044 219 37 758 186 7 21 chrX 42603649 42603794 -134370346 - LTR8A LTR ERV1 0 727 585 1804 130 0 11 chrX 42603804 42604074 -134370066 - L1PA16 LINE L1 -9 6157 5891 4696 170 39 20 chrX 42604780 42605428 -134368712 - L1MC2 LINE L1 -11 6333 5662 2119 116 3 23 chrX 42605428 42605591 -134368549 - AluSx SINE Alu -16 296 140 2216 97 0 3 chrX 42605591 42605880 -134368260 - AluSc SINE Alu -17 292 5 2119 116 3 23 chrX 42605880 42606018 -134368122 - AluSx SINE Alu -172 140 1 4696 170 39 20 chrX 42606018 42606273 -134367867 - L1MC2 LINE L1 -682 5662 5413 3344 117 59 117 chrX 42606283 42606956 -134367184 + MER51A LTR ERV1 1 634 0 1443 167 10 5 chrX 42606958 42607372 -134366768 - L1MC2 LINE L1 -743 5403 5080 2327 85 3 0 chrX 42607373 42607666 -134366474 + AluSg SINE Alu 1 294 -16 308 289 0 22 chrX 42607666 42607756 -134366384 - L1MC4 LINE L1 -1342 6700 6613 217 141 0 31 chrX 42607760 42607824 -134366316 + (TA)n Simple_repeat Simple_repeat 2 63 0 554 235 47 7 chrX 42607828 42607977 -134366163 - L1MC2 LINE L1 -1065 5081 4927 930 156 40 0 chrX 42608635 42608808 -134365332 - L1MA8 LINE L1 0 6291 6112 249 102 0 23 chrX 42608809 42608858 -134365282 - L1MA5A LINE L1 -227 6068 6017 7378 122 19 0 chrX 42609683 42611218 -134362922 - L1MA1 LINE L1 0 6302 4739 3735 224 25 11 chrX 42611249 42612204 -134361936 - L1MA1 LINE L1 -2828 3318 2350 5767 127 19 19 chrX 42612207 42613061 -134361079 - L1PA13 LINE L1 -1 6162 5309 1950 156 0 0 chrX 42613061 42613363 -134360777 - AluSx SINE Alu -9 303 2 5767 127 19 19 chrX 42613363 42614481 -134359659 - L1PA13 LINE L1 -853 5310 4189 239 330 74 18 chrX 42614529 42614923 -134359217 + L1M4 LINE L1 4399 4814 -1332 2312 107 0 0 chrX 42615071 42615381 -134358759 - AluY SINE Alu -1 310 1 263 309 120 14 chrX 42616584 42616744 -134357396 - L1M4 LINE L1 -6298 244 54 216 0 0 0 chrX 42616744 42616768 -134357372 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 263 309 120 14 chrX 42616768 42616824 -134357316 - L1M4 LINE L1 -6488 54 5 186 368 184 24 chrX 42616850 42617062 -134357078 - L2 LINE L2 -9 3263 3018 518 205 0 0 chrX 42617506 42617589 -134356551 + AluJ/FLAM SINE Alu 2 84 -228 682 189 119 0 chrX 42617637 42617796 -134356344 + L1MA8 LINE L1 6114 6291 0 23 54 0 0 chrX 42618202 42618239 -134355901 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 42618552 42618573 -134355567 + AT_rich Low_complexity Low_complexity 1 21 0 8459 23 12 2 chrX 42618690 42619775 -134354365 - L1P LINE L1 -3045 3101 2006 5927 37 1 0 chrX 42619777 42620482 -134353658 + L1PA3 LINE L1 5449 6154 -1 207 0 0 0 chrX 42620485 42620508 -134353632 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1794 126 7 0 chrX 42620515 42620808 -134353332 - L1P LINE L1 -4288 1858 1564 1554 129 14 37 chrX 42620808 42621103 -134353037 - L1P4 LINE L1 -569 5599 5312 1650 176 3 3 chrX 42621109 42621415 -134352725 - AluSx SINE Alu 0 306 1 740 179 8 8 chrX 42621415 42621549 -134352591 - AluSq/x SINE Alu -177 135 2 4512 197 10 33 chrX 42621567 42622714 -134351426 - L1P4 LINE L1 -837 5309 4190 535 337 68 19 chrX 42622754 42623167 -134350973 + L1M4 LINE L1 4388 4820 -1326 22 0 0 0 chrX 42624861 42624883 -134349257 + AT_rich Low_complexity Low_complexity 1 22 0 523 85 32 0 chrX 42625007 42625101 -134349039 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 312 314 135 24 chrX 42625449 42625656 -134348484 - L1M4 LINE L1 -6298 244 15 229 383 168 19 chrX 42625687 42625901 -134348239 - L2 LINE L2 -9 3263 3018 504 179 0 0 chrX 42626345 42626429 -134347711 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 42626478 42626645 -134347495 + L1MA8 LINE L1 6114 6290 -1 557 155 0 0 chrX 42627466 42627550 -134346590 + AluJ/FLAM SINE Alu 1 84 -228 646 168 90 30 chrX 42627599 42627766 -134346374 + L1MA8 LINE L1 6114 6290 -1 21 0 0 0 chrX 42628534 42628555 -134345585 + AT_rich Low_complexity Low_complexity 1 21 0 1185 227 60 41 chrX 42628845 42629306 -134344834 + LTR19C LTR ERV1 130 779 0 4091 199 25 23 chrX 42629306 42630048 -134344092 - L1 LINE L1 -2115 4031 3285 1637 169 11 4 chrX 42630048 42630320 -134343820 - AluSx SINE Alu -1 311 38 4091 199 25 23 chrX 42630320 42630637 -134343503 - L1 LINE L1 -2861 3285 2970 2355 157 34 0 chrX 42630819 42631226 -134342914 + MSTB LTR MaLR 6 426 0 9255 173 12 10 chrX 42631226 42632873 -134341267 + MSTB-int LTR MaLR 1 1651 0 2436 161 31 5 chrX 42632873 42633288 -134340852 + MSTB LTR MaLR 1 426 0 835 231 5 29 chrX 42633300 42633387 -134340753 - L1ME LINE L1 -488 5678 5590 1583 214 36 11 chrX 42633387 42633743 -134340397 + MLT1A1 LTR MaLR 1 365 0 835 231 5 29 chrX 42633743 42633863 -134340277 - L1ME LINE L1 -576 5590 5476 699 236 165 7 chrX 42633895 42634192 -134339948 - L1ME LINE L1 -2184 3962 3619 2025 180 32 34 chrX 42634193 42634739 -134339401 - MLT2A2 LTR ERVL -8 546 1 7816 183 20 11 chrX 42634873 42637580 -134336560 + L1PA16 LINE L1 3440 6165 -1 339 265 37 62 chrX 42637593 42637907 -134336233 - L1ME LINE L1 -2669 3477 3170 2396 50 0 0 chrX 42637907 42638205 -134335935 - L1PA8 LINE L1 0 6172 5875 7221 89 3 15 chrX 42638205 42639265 -134334875 - L1P3 LINE L1 -5407 1054 8 6576 153 16 18 chrX 42639272 42639454 -134334686 - L1M1 LINE L1 -521 5781 5600 2061 125 6 13 chrX 42639454 42639765 -134334375 - AluSg1 SINE Alu 0 309 1 6576 153 16 18 chrX 42639765 42641372 -134332768 - L1M1 LINE L1 -702 5600 4006 5455 109 27 3 chrX 42641388 42642453 -134331687 - L1PB2 LINE L1 -10 6141 5063 1032 174 46 0 chrX 42642462 42642680 -134331460 - L1 LINE L1 -743 5403 5176 1891 154 73 5 chrX 42642708 42643090 -134331050 + L1MA5A LINE L1 5884 6291 -6 6965 93 17 1 chrX 42643230 42644312 -134329828 + L1M1 LINE L1 1950 3048 -4517 1793 289 12 68 chrX 42644311 42645289 -134328851 + L1P3 LINE L1 2 924 -4951 * 18240 35 2 0 chrX 42645289 42648253 -134325887 + L1PA4 LINE L1 3188 6152 -3 14438 141 18 0 chrX 42648265 42651544 -134322596 + L1PA10 LINE L1 2827 6166 -2 7227 140 12 8 chrX 42651547 42653955 -134320185 + L1MA2 LINE L1 3890 6304 0 22 56 0 0 chrX 42653955 42653991 -134320149 + AT_rich Low_complexity Low_complexity 1 36 0 1129 200 3 28 chrX 42653991 42654281 -134319859 - L1 LINE L1 -1286 4860 4578 202 29 57 0 chrX 42654353 42654388 -134319752 + (TA)n Simple_repeat Simple_repeat 1 37 0 252 0 0 0 chrX 42654388 42654416 -134319724 + (T)n Simple_repeat Simple_repeat 1 28 0 8023 129 21 34 chrX 42654533 42656243 -134317897 - L1P3 LINE L1 -4314 2147 433 22 0 0 0 chrX 42656334 42656356 -134317784 + AT_rich Low_complexity Low_complexity 1 22 0 450 312 19 13 chrX 42656932 42657089 -134317051 - MIR SINE MIR -46 216 59 399 243 34 29 chrX 42657079 42657209 -134316931 + MIR SINE MIR 23 149 -63 * 335 303 6 62 chrX 42657884 42658046 -134316094 - L2 LINE L2 0 3313 3161 544 227 0 8 chrX 42658187 42658315 -134315825 - L1MDa LINE L1 -6219 425 299 186 103 0 0 chrX 42658594 42658623 -134315517 + (TG)n Simple_repeat Simple_repeat 2 30 0 257 169 17 0 chrX 42658635 42658694 -134315446 + (TA)n Simple_repeat Simple_repeat 1 60 0 216 0 0 0 chrX 42658760 42658784 -134315356 + (CA)n Simple_repeat Simple_repeat 2 25 0 351 0 0 0 chrX 42658899 42658938 -134315202 + (TC)n Simple_repeat Simple_repeat 2 40 0 435 149 0 0 chrX 42658938 42659012 -134315128 + (TA)n Simple_repeat Simple_repeat 2 75 0 265 250 114 30 chrX 42659342 42659474 -134314666 - L1MDa LINE L1 -6298 244 102 216 0 0 0 chrX 42659502 42659526 -134314614 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 235 372 167 17 chrX 42659604 42659784 -134314356 - L2 LINE L2 -9 3263 3057 526 155 0 0 chrX 42660266 42660350 -134313790 + AluJ/FLAM SINE Alu 1 84 -228 666 164 91 12 chrX 42660399 42660564 -134313576 + L1MA8 LINE L1 6114 6291 0 22 0 0 0 chrX 42661325 42661347 -134312793 + AT_rich Low_complexity Low_complexity 1 22 0 1199 242 53 45 chrX 42661601 42662095 -134312045 + LTR19C LTR ERV1 137 779 0 3636 197 10 33 chrX 42662099 42662856 -134311284 - L1 LINE L1 -2119 4027 3295 1528 180 8 0 chrX 42662856 42663111 -134311029 - AluSx SINE Alu -18 294 38 3636 197 10 33 chrX 42663111 42663289 -134310851 - L1 LINE L1 -2851 3295 3114 1696 217 27 29 chrX 42663391 42663912 -134310228 - L1 LINE L1 -3277 2869 2350 * 4756 127 5 34 chrX 42663908 42664785 -134309355 - L1PA13 LINE L1 -1 6162 5312 1106 164 6 0 chrX 42664790 42664973 -134309167 - AluSg/x SINE Alu -7 303 120 922 197 5 0 chrX 42664973 42665166 -134308974 - L1P LINE L1 -3777 2369 2176 2427 80 0 6 chrX 42665200 42665513 -134308627 - AluY SINE Alu 0 311 1 21 0 0 0 chrX 42665758 42665779 -134308361 + AT_rich Low_complexity Low_complexity 1 21 0 310 225 25 0 chrX 42665867 42665947 -134308193 - L1M4 LINE L1 -1664 4482 4401 1279 218 47 88 chrX 42666040 42666527 -134307613 + LTR19C LTR ERV1 313 779 0 6515 196 22 28 chrX 42666527 42667288 -134306852 - L1M4 LINE L1 -2115 4031 3267 1652 182 0 0 chrX 42667288 42667563 -134306577 - AluSx SINE Alu 0 312 38 6515 196 22 28 chrX 42667563 42668494 -134305646 - L1M4 LINE L1 -2879 3267 2350 2805 10 0 3 chrX 42668513 42668824 -134305316 - AluYa5 SINE Alu -1 310 1 5024 124 8 12 chrX 42668830 42669683 -134304457 - L1PA13 LINE L1 -2 6161 5312 2041 145 0 7 chrX 42669685 42669995 -134304145 - AluSx SINE Alu -4 308 1 207 114 0 0 chrX 42670002 42670037 -134304103 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 475 282 131 27 chrX 42670140 42670583 -134303557 - L1M4 LINE L1 -2063 4083 3595 213 314 77 5 chrX 42671518 42671661 -134302479 + MIR SINE MIR 45 196 -66 763 123 57 25 chrX 42671661 42671783 -134302357 + FLAM_C SINE Alu 1 126 -17 233 286 111 10 chrX 42671877 42672076 -134302064 - MER113 DNA MER1_type? -297 224 6 427 317 81 38 chrX 42672290 42672637 -134301503 - REP3 LTR ERV -47 515 154 261 351 36 36 chrX 42672782 42672950 -134301190 - L2 LINE L2 -4 3268 3101 25 0 0 0 chrX 42672965 42672990 -134301150 + AT_rich Low_complexity Low_complexity 1 25 0 1769 208 51 62 chrX 42673188 42673722 -134300418 - L1ME LINE L1 -690 5476 4938 222 37 0 0 chrX 42673722 42673749 -134300391 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2205 71 0 11 chrX 42673751 42674034 -134300106 - AluY SINE Alu -31 280 1 1769 208 51 62 chrX 42674034 42674337 -134299803 - L1ME LINE L1 -1229 4937 4655 4324 184 60 7 chrX 42674350 42675902 -134298238 - L1MA9 LINE L1 -29 6283 4647 1445 238 68 40 chrX 42675908 42676373 -134297767 + L1 LINE L1 2785 3235 -4330 1888 158 7 0 chrX 42676373 42676664 -134297476 + AluSx SINE Alu 1 293 -19 405 0 0 0 chrX 42676666 42676711 -134297429 + (CA)n Simple_repeat Simple_repeat 2 46 0 1445 238 68 40 chrX 42676711 42676797 -134297343 + L1 LINE L1 3235 3355 -4210 627 221 29 0 chrX 42676790 42676930 -134297210 - L1P LINE L1 -1369 4777 4634 * 644 236 68 26 chrX 42676934 42677278 -134296862 + L1 LINE L1 3346 3701 -3864 1143 161 16 8 chrX 42677285 42677527 -134296613 + L1 LINE L1 5732 5975 -1590 2242 81 7 0 chrX 42677528 42677812 -134296328 + AluY SINE Alu 1 286 -25 1281 105 0 10 chrX 42677912 42678121 -134296019 + MER41A-int LTR ERV1 3099 3305 -1710 963 121 10 6 chrX 42678123 42678305 -134295835 + MER41A-int LTR ERV1 2343 2501 -2514 11746 94 25 4 chrX 42678331 42680077 -134294063 + MER41A-int LTR ERV1 4109 5890 -56 3479 73 2 0 chrX 42680078 42680542 -134293598 + MER41A LTR ERV1 3 467 -87 439 254 35 0 chrX 42680602 42680744 -134293396 - L1MEc LINE L1 -4565 1831 1685 1266 83 0 0 chrX 42680760 42680928 -134293212 - L1PA8 LINE L1 -1 6171 6004 7405 124 44 14 chrX 42680928 42681795 -134292345 - L1P3 LINE L1 -5163 1298 381 207 0 0 0 chrX 42681795 42681818 -134292322 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7405 124 44 14 chrX 42681818 42682206 -134291934 - L1P3 LINE L1 -6080 381 6 2002 202 4 8 chrX 42682222 42682692 -134291448 - L1P LINE L1 -1490 4656 4189 232 275 99 12 chrX 42682956 42683127 -134291013 + L1M4 LINE L1 4629 4814 -1332 24 0 0 0 chrX 42683402 42683426 -134290714 + AT_rich Low_complexity Low_complexity 1 24 0 2409 35 0 0 chrX 42684480 42684766 -134289374 + AluY SINE Alu 1 286 -25 506 30 0 0 chrX 42734769 42734836 -134239304 + L1PA3 LINE L1 6089 6155 0 16714 83 2 2 chrX 42734836 42737285 -134236855 + L1P LINE L1 2065 4514 -1632 9264 59 6 3 chrX 42737385 42739400 -134234740 - L1PA3 LINE L1 -66 6089 4073 2012 112 35 11 chrX 42739412 42739871 -134234269 - L1P4 LINE L1 -567 5598 5129 3328 203 18 9 chrX 42739928 42740720 -134233420 + L1P LINE L1 4296 5094 -1052 2286 193 25 4 chrX 42740730 42741244 -134232896 - L1 LINE L1 -1778 4368 3844 11463 88 5 1 chrX 42741244 42743631 -134230509 - L1PA7 LINE L1 -2 6152 3759 6465 76 9 1 chrX 42743731 42744991 -134229149 + L1PA7 LINE L1 4874 6139 -15 704 238 26 0 chrX 42745002 42745229 -134228911 - L1 LINE L1 -1638 4508 4276 4258 179 37 45 chrX 42745305 42745894 -134228246 - L1MCa LINE L1 -4796 1630 1038 958 196 0 0 chrX 42745894 42746052 -134228088 - FAM SINE Alu -17 158 1 4258 179 37 45 chrX 42746052 42746352 -134227788 - L1MCa LINE L1 -5388 1038 749 2837 141 5 0 chrX 42746352 42746784 -134227356 - MER57B LTR ERV1 0 434 1 4258 179 37 45 chrX 42746784 42747008 -134227132 - L1MCa LINE L1 -5677 749 525 2348 153 41 30 chrX 42747031 42747493 -134226647 - Tigger2 DNA MER2_type -1 2717 2251 1366 142 122 52 chrX 42747493 42747714 -134226426 - THE1C LTR MaLR 0 375 120 3116 162 20 78 chrX 42747714 42748447 -134225693 - LTR8 LTR ERV1 0 691 1 1366 142 122 52 chrX 42748447 42748569 -134225571 - THE1C LTR MaLR -255 120 8 9613 128 34 6 chrX 42748571 42750197 -134223943 - Tigger2 DNA MER2_type -463 2255 584 2703 144 108 11 chrX 42750200 42750729 -134223411 + LTR8A LTR ERV1 1 580 -147 291 312 0 0 chrX 42750907 42750984 -134223156 - L2 LINE L2 -670 2644 2568 1237 192 63 31 chrX 42751284 42751601 -134222539 - LTR8 LTR ERV1 0 691 365 578 171 107 14 chrX 42751605 42751745 -134222395 - LTR1 LTR ERV1 0 785 633 * 704 129 8 15 chrX 42751740 42751872 -134222268 - LTR1 LTR ERV1 -654 131 1 1267 146 2 187 chrX 42751874 42752318 -134221822 - LTR8 LTR ERV1 -329 362 1 49 76 0 0 chrX 42752423 42752528 -134221612 + AT_rich Low_complexity Low_complexity 1 105 0 343 331 54 50 chrX 42752534 42752744 -134221396 - HAL1 LINE L1 -2 2505 2292 798 133 0 0 chrX 42752744 42752864 -134221276 - FLAM_C SINE Alu -13 120 1 343 331 54 50 chrX 42752864 42752895 -134221245 - HAL1 LINE L1 -215 2292 2263 339 197 13 0 chrX 42752975 42753051 -134221089 - MIR SINE MIR -3 259 183 4341 128 1 3 chrX 42755316 42755994 -134218146 + L1PA13 LINE L1 5486 6162 -1 298 105 18 18 chrX 42756060 42756117 -134218023 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 1616 251 94 24 chrX 42756857 42757614 -134216526 + L1M4 LINE L1 2242 3051 -3095 815 151 0 0 chrX 42757624 42757743 -134216397 + FLAM_C SINE Alu 1 119 -24 427 219 66 0 chrX 42757755 42757892 -134216248 + L1M4 LINE L1 4992 5137 -1009 534 293 15 34 chrX 42758195 42758400 -134215740 - MIR SINE MIR 0 262 62 209 367 33 25 chrX 42758761 42758881 -134215259 - MER5A DNA MER1_type -1 188 68 429 191 24 0 chrX 42759655 42759739 -134214401 - AluJ/FRAM SINE Alu -11 301 216 607 195 0 0 chrX 42759758 42759871 -134214269 - FLAM_C SINE Alu -28 115 3 271 214 29 0 chrX 42760085 42760155 -134213985 + MER20B DNA MER1_type 36 107 -676 390 291 39 15 chrX 42760176 42760379 -134213761 + MER20B DNA MER1_type 282 489 -294 448 137 14 0 chrX 42760804 42760877 -134213263 - HERVL68 LTR ERVL -65 2972 2899 288 0 0 0 chrX 42760896 42760928 -134213212 + (TG)n Simple_repeat Simple_repeat 1 32 0 1176 268 8 19 chrX 42760959 42761329 -134212811 - MLT2D LTR ERVL -48 366 1 2024 223 30 19 chrX 42761339 42761903 -134212237 - HERVL68 LTR ERVL -144 2893 2324 384 313 48 12 chrX 42762585 42762751 -134211389 - MIR SINE MIR -62 200 29 2874 66 3 5 chrX 42763562 42763942 -134210198 + L1PA8 LINE L1 5793 6171 -1 298 354 22 58 chrX 42763985 42764262 -134209878 - L2 LINE L2 -188 3084 2818 621 227 71 63 chrX 42764382 42764736 -134209404 + MER39 LTR ERV1 67 622 -85 679 186 0 0 chrX 42765481 42765605 -134208535 + FLAM_C SINE Alu 1 124 -9 2297 105 40 9 chrX 42765747 42766138 -134208002 + LTR3 LTR ERVK 1 432 0 222 239 0 0 chrX 42766609 42766655 -134207485 + A-rich Low_complexity Low_complexity 2 47 0 2433 81 7 0 chrX 42767413 42767720 -134206420 - AluSc SINE Alu 0 309 1 705 251 116 0 chrX 42771643 42771894 -134202246 - L1M4 LINE L1 -1227 4919 4640 353 297 181 20 chrX 42771929 42772283 -134201857 - L2 LINE L2 -1537 1777 1367 3489 214 32 0 chrX 42772310 42773006 -134201134 + MLT1-int LTR MaLR 201 918 -453 1965 214 46 7 chrX 42773171 42773582 -134200558 + MLT1-int LTR MaLR 937 1363 -8 1065 123 3 207 chrX 42773661 42773721 -134200419 - Tigger1 DNA MER2_type -57 2361 2290 1863 74 0 4 chrX 42773721 42773965 -134200175 + L1PB1 LINE L1 5906 6148 -3 1065 123 3 207 chrX 42773965 42774237 -134199903 - Tigger1 DNA MER2_type -128 2290 2097 2397 167 62 0 chrX 42774460 42774879 -134199261 - Tigger1 DNA MER2_type -324 2094 1650 2845 199 35 0 chrX 42775035 42775578 -134198562 + MER68 LTR ERV1 1 562 0 613 320 31 36 chrX 42775630 42776058 -134198082 + HERVL68 LTR ERVL 9 514 -2523 1620 194 3 7 chrX 42776069 42776363 -134197777 + AluJo SINE Alu 1 293 -19 222 91 0 0 chrX 42776639 42776672 -134197468 + (TC)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chrX 42776684 42776719 -134197421 + AT_rich Low_complexity Low_complexity 1 35 0 471 235 12 54 chrX 42776720 42776886 -134197254 - MIR SINE MIR -58 204 46 4656 201 10 1 chrX 42777288 42778217 -134195923 - L1M4 LINE L1 -1748 4398 3462 411 168 11 53 chrX 42778200 42778295 -134195845 - L1P LINE L1 -2583 3563 3473 * 6909 65 4 8 chrX 42778295 42779279 -134194861 - L1PA6 LINE L1 -3 6151 5167 522 288 19 0 chrX 42779571 42779731 -134194409 + MIR SINE MIR 90 252 -10 545 128 11 0 chrX 42779926 42780020 -134194120 + L1MA7 LINE L1 6191 6285 -6 1809 127 0 107 chrX 42780242 42780588 -134193552 + AluSx SINE Alu 1 309 -3 335 282 97 41 chrX 42780621 42780816 -134193324 - L3 LINE CR1 -7 1570 1365 281 325 56 90 chrX 42780868 42781383 -134192757 - L2 LINE L2 -50 3222 2720 1575 155 70 7 chrX 42782852 42783123 -134191017 - AluSx SINE Alu -24 288 1 2192 120 3 3 chrX 42783240 42783539 -134190601 - AluSx SINE Alu -13 299 1 489 337 132 22 chrX 42783545 42783955 -134190185 - L3 LINE CR1 -343 1234 780 370 331 8 8 chrX 42784096 42784220 -134189920 - L3 LINE CR1 -827 750 627 314 230 0 14 chrX 42785333 42785407 -134188733 - MER52A LTR ERV1 -4 1751 1679 * 3819 197 74 85 chrX 42785395 42786578 -134187562 - MER52A LTR ERV1 -561 1194 25 1547 135 106 14 chrX 42788075 42788376 -134185764 - AluSx SINE Alu 0 312 2 2053 188 26 114 chrX 42789268 42789821 -134184319 + MLT2B3 LTR ERVL 1 498 -56 486 0 0 0 chrX 42789821 42789875 -134184265 + (TG)n Simple_repeat Simple_repeat 2 55 0 2053 188 26 114 chrX 42789875 42789928 -134184212 + MLT2B3 LTR ERVL 498 554 0 582 263 62 11 chrX 42790744 42790923 -134183217 + MER5A DNA MER1_type 2 189 0 187 227 160 13 chrX 42791268 42791343 -134182797 + L2 LINE L2 3228 3313 0 296 245 77 49 chrX 42792275 42792434 -134181706 - MIR SINE MIR -68 140 5 291 114 0 0 chrX 42792440 42792484 -134181656 + (TC)n Simple_repeat Simple_repeat 1 44 0 323 207 0 9 chrX 42794048 42794159 -134179981 + C-rich Low_complexity Low_complexity 4 113 0 50 114 0 0 chrX 42796296 42796542 -134177598 + AT_rich Low_complexity Low_complexity 1 246 0 26 30 0 0 chrX 42796927 42796960 -134177180 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 42797025 42797046 -134177094 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 42797145 42797174 -134176966 + AT_rich Low_complexity Low_complexity 1 29 0 203 374 37 0 chrX 42797743 42797850 -134176290 + L2 LINE L2 2952 3062 -251 251 193 29 164 chrX 42798674 42798814 -134175326 + MLT1K LTR MaLR 129 249 -339 626 212 71 38 chrX 42798943 42799127 -134175013 + MLT1K LTR MaLR 391 580 -8 351 327 64 45 chrX 42799372 42799592 -134174548 - MIR SINE MIR -15 247 24 196 372 32 6 chrX 42800816 42800972 -134173168 + L2 LINE L2 1747 1906 -1408 1364 170 18 102 chrX 42802530 42802872 -134171268 - MLT2A2 LTR ERVL -140 313 1 1214 281 51 13 chrX 42802874 42803326 -134170814 - Charlie4a DNA MER1_type -1 507 39 1100 239 33 41 chrX 42803529 42803720 -134170420 + L1M4 LINE L1 2490 2681 -3465 1148 175 117 61 chrX 42803720 42804046 -134170094 + MER2 DNA MER2_type 1 344 0 1100 239 33 41 chrX 42804046 42804085 -134170055 + L1M4 LINE L1 2681 2719 -3427 507 238 181 36 chrX 42804085 42804278 -134169862 - MER58A DNA MER1_type 0 224 4 1100 239 33 41 chrX 42804278 42804465 -134169675 + L1M4 LINE L1 2719 2905 -3241 773 213 96 52 chrX 42804551 42804842 -134169298 + L1M4 LINE L1 3679 3982 -2164 518 204 9 0 chrX 42804839 42804952 -134169188 - L1M4 LINE L1 -884 5262 5149 * 3831 169 76 87 chrX 42804946 42805188 -134168952 - L1MA5A LINE L1 0 6297 6054 2208 93 0 10 chrX 42805188 42805488 -134168652 + AluSx SINE Alu 1 297 -15 3831 169 76 87 chrX 42805488 42806512 -134167628 - L1MA5A LINE L1 -243 6054 5046 232 276 8 60 chrX 42806518 42806652 -134167488 + MIR SINE MIR 125 251 -11 391 306 198 16 chrX 42806655 42806969 -134167171 + L2 LINE L2 2888 3258 -55 265 209 337 0 chrX 42807027 42807113 -134167027 - MIR SINE MIR -97 165 51 297 0 0 0 chrX 42808760 42808793 -134165347 + (T)n Simple_repeat Simple_repeat 1 33 0 2267 105 0 3 chrX 42810270 42810600 -134163540 + AluSg SINE Alu 1 329 0 2247 103 3 10 chrX 42811302 42811614 -134162526 + AluSx SINE Alu 1 310 -2 219 36 0 0 chrX 42812702 42812730 -134161410 + (CA)n Simple_repeat Simple_repeat 2 29 0 491 246 80 78 chrX 42813484 42813984 -134160156 - L1MC5 LINE L1 -10 7951 7451 252 100 0 0 chrX 42815028 42815068 -134159072 + (CAGAGA)n Simple_repeat Simple_repeat 3 42 0 287 284 32 0 chrX 42815428 42815523 -134158617 + Charlie7 DNA MER1_type 4 101 -2511 * 370 184 34 75 chrX 42815515 42815662 -134158478 + Charlie7 DNA MER1_type 2434 2574 -38 1932 191 48 35 chrX 42815670 42816126 -134158014 - MLT1C LTR MaLR 0 467 6 409 312 68 43 chrX 42816809 42817043 -134157097 + MIR SINE MIR 12 251 -11 344 235 23 91 chrX 42817371 42817503 -134156637 - L2 LINE L2 0 3313 3191 357 24 0 0 chrX 42817905 42817947 -134156193 + (GA)n Simple_repeat Simple_repeat 1 42 0 183 129 0 0 chrX 42819822 42819853 -134154287 + (GA)n Simple_repeat Simple_repeat 2 32 0 191 289 0 0 chrX 42819926 42819971 -134154169 + MIR SINE MIR 106 150 -112 29 60 0 0 chrX 42820524 42820574 -134153566 + AT_rich Low_complexity Low_complexity 1 50 0 511 259 55 68 chrX 42821020 42821329 -134152811 + MER5C DNA MER1_type 17 321 -3 233 173 58 0 chrX 42822171 42822223 -134151917 + LTR13 LTR ERVK 661 715 -292 186 43 0 0 chrX 42822223 42822246 -134151894 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 65 0 0 chrX 42822246 42822308 -134151832 + (CA)n Simple_repeat Simple_repeat 1 62 0 360 0 0 0 chrX 42822356 42822396 -134151744 + (TG)n Simple_repeat Simple_repeat 2 41 0 397 345 65 0 chrX 42822834 42823034 -134151106 + MIR SINE MIR 36 248 -14 4139 255 49 47 chrX 42823161 42824736 -134149404 + L2 LINE L2 1545 3114 -199 189 0 0 0 chrX 42824736 42824757 -134149383 + (CCA)n Simple_repeat Simple_repeat 2 22 0 4139 255 49 47 chrX 42824757 42824958 -134149182 + L2 LINE L2 3114 3313 0 286 340 77 30 chrX 42826193 42826428 -134147712 + MIR SINE MIR 5 250 -12 194 214 43 71 chrX 42827272 42827342 -134146798 + MIR SINE MIR 30 97 -111 201 318 36 45 chrX 42827692 42827802 -134146338 + L2 LINE L2 3160 3268 -4 232 235 39 0 chrX 42829088 42829139 -134145001 + L2 LINE L2 3202 3254 -18 186 43 0 0 chrX 42832855 42832878 -134141262 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 229 196 0 0 chrX 42832882 42832928 -134141212 + LTR66 LTR ERVL 394 439 -171 * 231 167 0 0 chrX 42832900 42832942 -134141198 - LTR66 LTR ERVL -171 439 398 198 103 0 0 chrX 42832942 42832971 -134141169 + (TA)n Simple_repeat Simple_repeat 1 29 0 432 186 59 0 chrX 42833766 42833868 -134140272 + MIR SINE MIR 123 230 -32 280 374 77 7 chrX 42834692 42835002 -134139138 - L1ME3A LINE L1 -240 5930 5599 421 319 145 15 chrX 42835488 42835826 -134138314 - L2 LINE L2 -555 2759 2378 201 138 0 0 chrX 42837032 42837061 -134137079 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 187 346 89 0 chrX 42837341 42837442 -134136698 - MIR SINE MIR -43 219 110 2915 3 0 0 chrX 42837465 42837776 -134136364 + AluYa5 SINE Alu 1 311 0 248 340 56 14 chrX 42837878 42838022 -134136118 - MIR SINE MIR -94 168 19 649 323 45 50 chrX 42838554 42838972 -134135168 - L2 LINE L2 -737 2577 2162 21 71 0 0 chrX 42839032 42839074 -134135066 + AT_rich Low_complexity Low_complexity 1 42 0 578 179 0 0 chrX 42839353 42839448 -134134692 - MLT1B LTR MaLR 0 390 296 189 275 0 0 chrX 42839789 42839829 -134134311 - MIR SINE MIR -5 257 218 * 331 373 78 43 chrX 42839828 42840174 -134133966 - L2 LINE L2 -1 3271 2914 433 298 85 29 chrX 42840265 42840652 -134133488 - L1ME LINE L1 -297 5824 5423 314 271 59 0 chrX 42840733 42840773 -134133367 - L1MA10 LINE L1 -41 6293 6254 3297 215 35 29 chrX 42840773 42841775 -134132365 - L1ME1 LINE L1 -76 6090 5078 2585 154 4 20 chrX 42841768 42841878 -134132262 - L1PB4 LINE L1 -1 6155 6046 * 6118 177 70 25 chrX 42841878 42842541 -134131599 - L1MA4 LINE L1 -261 6039 5407 2050 121 27 7 chrX 42842541 42842839 -134131301 - AluSq SINE Alu -9 304 1 6118 177 70 25 chrX 42842839 42842862 -134131278 - L1MA4 LINE L1 -893 5407 5386 198 0 0 0 chrX 42842862 42842884 -134131256 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6118 177 70 25 chrX 42842884 42844076 -134130064 - L1MA4 LINE L1 -914 5386 4072 2070 245 43 18 chrX 42844099 42844772 -134129368 - L1ME1 LINE L1 -2512 3634 2945 368 132 15 0 chrX 42844928 42844996 -134129144 - L1PB4 LINE L1 -1098 5048 4980 825 242 45 0 chrX 42844999 42845197 -134128943 - L1PA13 LINE L1 -4861 1926 1720 303 353 0 10 chrX 42845193 42845295 -134128845 - L1PA13 LINE L1 -5360 1427 1327 * 2084 304 38 36 chrX 42845360 42846116 -134128024 - L1PA13 LINE L1 -5923 864 104 1955 146 0 29 chrX 42846116 42846425 -134127715 - AluSx SINE Alu -12 300 1 2084 304 38 36 chrX 42846425 42846530 -134127610 - L1PA13 LINE L1 -6683 104 1 2719 233 33 38 chrX 42846540 42847507 -134126633 - L1M4 LINE L1 -2797 3847 2886 225 179 0 0 chrX 42847903 42847959 -134126181 - L1MA7 LINE L1 -1 6290 6235 4972 237 86 27 chrX 42847970 42850133 -134124007 - L1M4 LINE L1 -3746 2898 626 287 302 94 19 chrX 42850462 42850621 -134123519 - L1M4 LINE L1 -6297 245 75 5509 247 42 30 chrX 42850664 42852954 -134121186 - L1MEc LINE L1 -2259 4385 2115 * 9469 25 4 0 chrX 42852948 42854047 -134120093 - L1P LINE L1 -1318 4828 3726 6398 33 0 0 chrX 42854047 42854750 -134119390 + L1PA3 LINE L1 5451 6155 0 539 257 55 38 chrX 42854750 42854961 -134119179 - L1MEc LINE L1 -4666 1980 1763 520 205 17 0 chrX 42854964 42855081 -134119059 + L1M4c LINE L1 2305 2423 -3961 4242 259 53 42 chrX 42855082 42856090 -134118050 - L1MEc LINE L1 -4833 1709 718 2379 176 26 16 chrX 42856090 42856517 -134117623 + MSTB1 LTR MaLR 1 431 -1 4242 259 53 42 chrX 42856517 42857235 -134116905 - L1MEc LINE L1 -5824 718 9 2419 289 30 57 chrX 42860849 42861767 -134112373 + L1MDa LINE L1 16 991 -5549 9364 58 0 1 chrX 42861768 42862954 -134111186 - L1P LINE L1 -3175 2971 1787 3351 43 0 0 chrX 42862952 42863346 -134110794 + L1P LINE L1 3872 4265 -1881 * 1592 215 74 49 chrX 42863351 42863580 -134110560 + L1MD2 LINE L1 5914 6161 -198 339 25 0 0 chrX 42863580 42863620 -134110520 + (CA)n Simple_repeat Simple_repeat 1 40 0 1592 215 74 49 chrX 42863620 42863822 -134110318 + L1MD2 LINE L1 6161 6356 -3 869 213 59 29 chrX 42863918 42864157 -134109983 - MLT1B LTR MaLR -141 249 4 246 250 15 15 chrX 42864325 42864393 -134109747 - MER20B DNA MER1_type 0 783 716 1113 261 50 39 chrX 42864417 42864774 -134109366 + MLT1I LTR MaLR 41 401 -8 243 141 16 94 chrX 42864780 42864844 -134109296 - MER20B DNA MER1_type -61 722 664 1317 92 54 14 chrX 42866025 42866337 -134107803 + THE1C LTR MaLR 1 375 0 22847 21 0 0 chrX 42868216 42872904 -134101236 - L1HS LINE L1 0 6155 1468 2183 233 119 2 chrX 42873189 42874237 -134099903 + MER69B DNA AcHobo 1 1214 -12 236 309 0 0 chrX 42874333 42874388 -134099752 + (TG)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chrX 42874738 42874767 -134099373 + AT_rich Low_complexity Low_complexity 1 29 0 1086 303 75 36 chrX 42875581 42876023 -134098117 + MLT1E LTR MaLR 1 459 -134 987 112 22 0 chrX 42876110 42876244 -134097896 + AluSq/x SINE Alu 1 137 -175 636 225 7 0 chrX 42876248 42876386 -134097754 + MLT1F LTR MaLR 404 542 0 4352 136 20 11 chrX 42876446 42877190 -134096950 - L1MA8 LINE L1 -3 6288 5538 463 322 105 0 chrX 42878477 42878648 -134095492 - MER5A DNA MER1_type 0 189 1 1389 287 65 43 chrX 42879133 42880024 -134094116 + L1MB5 LINE L1 18 1079 -5567 24149 174 15 23 chrX 42880032 42882441 -134091699 + L1PA10 LINE L1 10 2437 -4046 2211 112 0 0 chrX 42882441 42882755 -134091385 + AluSq SINE Alu 1 314 0 24149 174 15 23 chrX 42882755 42886857 -134087283 + L1PA10 LINE L1 2437 6474 -9 2853 236 36 47 chrX 42886884 42888273 -134085867 + L1MB5 LINE L1 1069 2535 -4111 * 5097 251 45 12 chrX 42888270 42890035 -134084105 + L1MB5 LINE L1 3238 5060 -1584 2402 138 102 9 chrX 42890035 42890498 -134083642 + L1MA8 LINE L1 5764 6269 -22 23 54 0 0 chrX 42890499 42890536 -134083604 + AT_rich Low_complexity Low_complexity 1 37 0 2898 205 28 44 chrX 42890536 42891873 -134082267 + L1MB5 LINE L1 5047 6371 -301 5756 116 17 6 chrX 42891873 42893350 -134080790 + L1PA15 LINE L1 4694 6162 -3 2898 205 28 44 chrX 42893350 42893431 -134080709 + L1MB5 LINE L1 6371 6452 -220 2643 204 52 38 chrX 42893462 42893541 -134080599 + L1PB4 LINE L1 783 859 -5444 1628 146 24 3 chrX 42893541 42893828 -134080312 - L1MA6 LINE L1 -9 6291 5999 2643 204 52 38 chrX 42893828 42894611 -134079529 + L1PB4 LINE L1 859 1787 -4516 * 5409 177 14 10 chrX 42894601 42896577 -134077563 + L1PB4 LINE L1 4398 6381 -11 2215 200 28 92 chrX 42896580 42896916 -134077224 + L1M4 LINE L1 2179 2535 -4976 716 109 0 0 chrX 42896916 42897017 -134077123 + HY3 scRNA scRNA 1 101 0 2215 200 28 92 chrX 42897017 42897519 -134076621 + L1M4 LINE L1 2535 2900 -4611 2162 116 20 0 chrX 42897519 42897812 -134076328 + AluSx SINE Alu 1 299 -13 2215 200 28 92 chrX 42897812 42897899 -134076241 + L1M4 LINE L1 2900 2991 -4520 1094 116 0 0 chrX 42897899 42898045 -134076095 + AluSq/x SINE Alu 1 146 -166 501 122 0 0 chrX 42898045 42898119 -134076021 + AluS SINE Alu 227 300 -9 2774 244 33 75 chrX 42898250 42899224 -134074916 + L1M4 LINE L1 3196 4085 -3480 1936 173 40 3 chrX 42899224 42899576 -134074564 + MLT1A1 LTR MaLR 1 365 0 2774 244 33 75 chrX 42899576 42900214 -134073926 + L1M4 LINE L1 4085 4748 -2817 7804 14 0 0 chrX 42900240 42901134 -134073006 - L1PA2 LINE L1 -8 6147 5254 5198 214 72 54 chrX 42901136 42903568 -134070572 + L1MA9 LINE L1 3559 5947 -601 2132 149 33 0 chrX 42903568 42903903 -134070237 + MER7A DNA MER2_type 1 344 -2 186 43 0 0 chrX 42903903 42903926 -134070214 + (TA)n Simple_repeat Simple_repeat 2 24 0 5198 214 72 54 chrX 42903926 42904411 -134069729 + L1MA9 LINE L1 5946 6524 -24 2468 210 9 11 chrX 42904420 42904991 -134069149 + L1MA10 LINE L1 5765 6334 0 997 265 11 4 chrX 42905001 42905280 -134068860 + L1M4 LINE L1 6208 6488 -1077 2136 105 3 7 chrX 42907152 42907448 -134066692 - AluSx SINE Alu -17 295 1 313 300 46 92 chrX 42908441 42908504 -134065636 - L1MC4a LINE L1 -504 5727 5663 2322 85 0 16 chrX 42908504 42908809 -134065331 - AluSq SINE Alu -13 300 1 313 300 46 92 chrX 42908809 42909216 -134064924 - L1MC4a LINE L1 -568 5663 5504 25 0 0 0 chrX 42909318 42909343 -134064797 + AT_rich Low_complexity Low_complexity 1 25 0 296 291 138 21 chrX 42909348 42909674 -134064466 - L1ME3A LINE L1 -222 5948 5585 * 416 214 36 46 chrX 42909655 42909874 -134064266 - L1M1 LINE L1 -691 5479 5263 1768 138 47 4 chrX 42910072 42910348 -134063792 + AluJb SINE Alu 1 288 -24 21 0 0 0 chrX 42910348 42910369 -134063771 + AT_rich Low_complexity Low_complexity 1 21 0 306 231 167 0 chrX 42910401 42910479 -134063661 - L2 LINE L2 -2 3311 3221 243 100 0 0 chrX 42910499 42910539 -134063601 - Alu SINE Alu -7 301 262 2246 95 0 26 chrX 42910543 42910849 -134063291 - AluSx SINE Alu -14 298 1 206 282 145 16 chrX 42910850 42910974 -134063166 - L2 LINE L2 -90 3223 3084 353 339 31 12 chrX 42911004 42911323 -134062817 - L1ME3A LINE L1 -1356 4790 4466 332 308 40 18 chrX 42911400 42911554 -134062586 - L1ME3A LINE L1 -3127 3019 2857 2055 77 0 4 chrX 42911554 42911815 -134062325 + AluSq SINE Alu 39 298 -15 332 308 40 18 chrX 42911815 42911887 -134062253 - L1ME3A LINE L1 -3289 2857 2788 244 260 92 25 chrX 42912037 42912233 -134061907 - L1MC4a LINE L1 -1306 4909 4701 346 307 151 0 chrX 42912303 42912469 -134061671 - L1MC4a LINE L1 -3616 2599 2409 1841 164 3 3 chrX 42912648 42912941 -134061199 - AluJb SINE Alu -19 293 1 303 246 85 39 chrX 42913369 42913499 -134060641 - HAL1 LINE L1 -860 1647 1512 801 245 45 20 chrX 42913578 42913823 -134060317 + L1ME2 LINE L1 5910 6160 -4 302 291 51 33 chrX 42914437 42914683 -134059457 - L1MEd LINE L1 -4876 1329 1151 28457 130 16 55 chrX 42914700 42921115 -134053025 - L1PA8 LINE L1 -7 6165 13 515 269 79 53 chrX 42921129 42921495 -134052645 - L1MEd LINE L1 -5053 1152 802 32 0 0 0 chrX 42921870 42921902 -134052238 + AT_rich Low_complexity Low_complexity 1 32 0 301 231 39 0 chrX 42922855 42922933 -134051207 - MIR SINE MIR -63 199 119 251 71 24 0 chrX 42923835 42923877 -134050263 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2255 117 3 0 chrX 42924078 42924385 -134049755 - AluSc SINE Alu -1 308 1 399 35 0 85 chrX 42924702 42924781 -134049359 - MLT2A2 LTR ERVL 0 453 386 206 140 0 20 chrX 42924781 42924831 -134049309 + (TA)n Simple_repeat Simple_repeat 1 49 0 319 200 11 63 chrX 42924837 42924932 -134049208 + L1MC4 LINE L1 6614 6703 -1339 450 178 0 32 chrX 42924939 42925124 -134049016 + (TA)n Simple_repeat Simple_repeat 1 179 0 249 253 0 11 chrX 42925139 42925230 -134048910 + L1MC4 LINE L1 6614 6703 -1339 454 212 4 18 chrX 42925238 42926059 -134048081 + (TA)n Simple_repeat Simple_repeat 1 809 0 10908 35 0 0 chrX 42926065 42927444 -134046696 - L1P LINE L1 -1492 4654 3276 559 169 9 36 chrX 42927450 42928358 -134045782 + (TA)n Simple_repeat Simple_repeat 1 883 0 350 151 11 43 chrX 42928371 42928557 -134045583 + (TA)n Simple_repeat Simple_repeat 1 180 0 1064 101 13 0 chrX 42928579 42928738 -134045402 + HERVL LTR ERVL 4862 5022 -632 424 119 17 45 chrX 42928757 42928934 -134045206 + (TA)n Simple_repeat Simple_repeat 1 172 0 2766 91 10 5 chrX 42928934 42929330 -134044810 - MLT2A1 LTR ERVL -46 398 1 28594 69 9 1 chrX 42929330 42933125 -134041015 - HERVL-A1 LTR ERVL 0 5654 1831 887 237 60 5 chrX 42934307 42934522 -134039618 + MIR SINE MIR 9 235 -27 328 238 25 12 chrX 42934530 42934610 -134039530 + L2 LINE L2 3190 3270 -2 458 242 26 25 chrX 42934768 42934897 -134039243 - MIR SINE MIR -62 146 38 551 348 72 65 chrX 42935057 42935474 -134038666 - L2 LINE L2 -2 3270 2851 25 0 0 0 chrX 42936215 42936240 -134037900 + AT_rich Low_complexity Low_complexity 1 25 0 333 339 9 26 chrX 42936492 42936607 -134037533 + L1M3c LINE L1 3 115 -6026 1659 148 7 0 chrX 42937355 42937626 -134036514 - L1PB3 LINE L1 0 6154 5882 8192 214 30 20 chrX 42937627 42938341 -134035799 - L1PBb LINE L1 -1937 4911 4205 2516 63 0 0 chrX 42938341 42938644 -134035496 - AluY SINE Alu -8 303 1 8192 214 30 20 chrX 42938644 42941293 -134032847 - L1PBb LINE L1 -2643 4205 1326 437 88 150 0 chrX 42941295 42941375 -134032765 + L1PBb LINE L1 648 739 -5465 3380 251 32 24 chrX 42941380 42942664 -134031476 - L1PBa LINE L1 -5220 1629 17 268 316 59 20 chrX 42942667 42942819 -134031321 - L1PA15-16 LINE L1 -5419 1430 1273 * 2028 317 39 34 chrX 42942787 42944207 -134029933 - L1PA15-16 LINE L1 -5441 1409 1 2379 54 0 7 chrX 42944422 42944717 -134029423 + AluY SINE Alu 2 294 -17 8419 106 13 1 chrX 42944719 42945951 -134028189 - HSMAR1 DNA Mariner -19 1268 22 1052 188 16 0 chrX 42946080 42946272 -134027868 - MLT2D LTR ERVL -219 195 1 25552 172 66 47 chrX 42946277 42947309 -134026831 - ERVL-D LTR ERVL -12 5752 4741 331 248 54 47 chrX 42947309 42947438 -134026702 + AluJo SINE Alu 3 132 -170 25552 172 66 47 chrX 42947438 42948488 -134025652 - ERVL-D LTR ERVL -1023 4741 3713 2062 117 27 24 chrX 42948488 42948786 -134025354 + AluSx SINE Alu 1 299 -13 25552 172 66 47 chrX 42948786 42952187 -134021953 - ERVL-D LTR ERVL -2051 3713 33 5548 79 19 53 chrX 42952210 42953287 -134020853 + SVA Other Other 1 866 -520 650 67 7 44 chrX 42953304 42953439 -134020701 + SVA Other Other 665 794 -592 6928 59 6 49 chrX 42953452 42954449 -134019691 + SVA Other Other 433 1386 0 250 164 0 0 chrX 42954498 42954548 -134019592 - MLT2D LTR ERVL -7 457 418 339 25 0 0 chrX 42954563 42954603 -134019537 + (TG)n Simple_repeat Simple_repeat 2 41 0 1938 167 19 33 chrX 42954630 42954996 -134019144 - MLT2D LTR ERVL -53 361 1 215 243 0 14 chrX 42955041 42955111 -134019029 + (TA)n Simple_repeat Simple_repeat 1 69 0 2365 68 3 3 chrX 42958144 42958436 -134015704 + AluSp SINE Alu 1 292 -21 186 297 177 46 chrX 42958882 42959057 -134015083 + MIR SINE MIR 59 256 -6 317 339 43 21 chrX 42960016 42960202 -134013938 - L2 LINE L2 -2595 719 530 1053 128 6 18 chrX 42961186 42961350 -134012790 + AluJo SINE Alu 134 295 -17 617 172 0 0 chrX 42961809 42961925 -134012215 + L1MB3 LINE L1 6068 6183 0 1148 133 21 16 chrX 42964672 42964860 -134009280 - MER5A DNA MER1_type 0 189 1 674 295 79 4 chrX 42965222 42965449 -134008691 - MIR SINE MIR -14 248 5 211 369 31 39 chrX 42965665 42965795 -134008345 + L3b LINE CR1 1344 1472 -111 604 280 63 5 chrX 42965959 42966148 -134007992 - L2 LINE L2 -5 3308 3109 2042 179 32 46 chrX 42966168 42966672 -134007468 + MLT1D LTR MaLR 4 500 -5 1672 211 9 70 chrX 42966693 42967138 -134007002 - MLT2B1 LTR ERVL -97 423 6 1180 246 33 45 chrX 42967146 42967604 -134006536 - L2 LINE L2 -245 3068 2621 1978 195 22 76 chrX 42967605 42968147 -134005993 + MLT2B3 LTR ERVL 1 403 -50 295 175 0 0 chrX 42968229 42968286 -134005854 + MLT2B3 LTR ERVL 464 520 0 1174 225 132 59 chrX 42968287 42968727 -134005413 - L2 LINE L2 -691 2623 2152 21 0 0 0 chrX 42968732 42968753 -134005387 + AT_rich Low_complexity Low_complexity 1 21 0 1608 153 19 101 chrX 42968829 42969207 -134004933 + MER7A DNA MER2_type 1 345 -1 470 281 22 14 chrX 42969315 42969454 -134004686 - MIR SINE MIR 0 262 123 357 341 40 29 chrX 42969530 42969703 -134004437 - MIR SINE MIR -54 208 34 659 113 9 52 chrX 42969745 42969860 -134004280 + MER3 DNA MER1_type 1 110 -99 1245 19 0 6 chrX 42969860 42970018 -134004122 - L1PA3 LINE L1 -61 6094 5938 454 31 15 0 chrX 42970018 42970082 -134004058 + L1PA2 LINE L1 6090 6155 0 445 170 57 9 chrX 42970123 42970229 -134003911 + MER3 DNA MER1_type 99 209 0 265 208 0 0 chrX 42970187 42970240 -134003900 - MER3 DNA MER1_type -120 89 37 * 333 318 122 25 chrX 42970317 42970562 -134003578 + L1 LINE L1 3539 3807 -2339 48 0 0 0 chrX 42970590 42970638 -134003502 + AT_rich Low_complexity Low_complexity 1 48 0 1472 218 33 45 chrX 42970804 42971299 -134002841 + MLT1E LTR MaLR 47 593 0 352 294 81 60 chrX 42971540 42971788 -134002352 + L1ME LINE L1 5549 5801 -320 1219 251 145 42 chrX 42971808 42972157 -134001983 - MLT1J LTR MaLR -9 502 94 2161 128 3 0 chrX 42972157 42972462 -134001678 - AluSx SINE Alu -6 306 1 1219 251 145 42 chrX 42972462 42972567 -134001573 - MLT1J LTR MaLR -417 94 1 644 280 6 11 chrX 42973121 42973303 -134000837 + L2 LINE L2 1812 1992 -1322 39235 79 11 8 chrX 42973303 42979430 -133994710 - L1PA6 LINE L1 0 6154 10 206 272 120 0 chrX 42979430 42979522 -133994618 + L2 LINE L2 1984 2086 -1228 256 279 108 32 chrX 42979574 42979732 -133994408 + L2 LINE L2 2203 2372 -942 482 260 23 51 chrX 42980034 42980211 -133993929 + L2 LINE L2 3126 3297 -16 1844 120 175 71 chrX 42981079 42981445 -133992695 - MER4A LTR ERV1 0 664 261 468 154 77 0 chrX 42981445 42981536 -133992604 - MER4A LTR ERV1 -566 98 1 200 372 0 27 chrX 42981676 42981795 -133992345 + MIR SINE MIR 35 148 -83 610 230 62 17 chrX 42982417 42982595 -133991545 - MIR SINE MIR -71 191 6 689 243 132 0 chrX 42982619 42982808 -133991332 + MIR SINE MIR 13 226 -36 2275 115 0 0 chrX 42983124 42983437 -133990703 - L1PA13 LINE L1 -1 6162 5850 460 268 14 22 chrX 42983459 42983597 -133990543 - L1ME LINE L1 -420 5701 5565 4453 157 6 1 chrX 42983691 42985004 -133989136 + L1PB1 LINE L1 4475 5791 -360 665 120 3 53 chrX 42985004 42985386 -133988754 + (TA)n Simple_repeat Simple_repeat 1 362 0 285 58 92 23 chrX 42985439 42985526 -133988614 + (CATAT)n Simple_repeat Simple_repeat 3 95 0 2528 128 8 3 chrX 42985526 42985894 -133988246 + L1PB1 LINE L1 5781 6150 -1 702 222 40 0 chrX 42985896 42986072 -133988068 + Charlie2 DNA MER1_type 2644 2826 -36 785 223 36 0 chrX 42986074 42986240 -133987900 - MER5B DNA MER1_type -1 177 6 25 31 0 0 chrX 42986675 42986707 -133987433 + AT_rich Low_complexity Low_complexity 1 32 0 270 128 0 0 chrX 42987105 42987144 -133986996 - L1MB7 LINE L1 -262 5922 5884 534 266 84 44 chrX 42987379 42987582 -133986558 - MIR SINE MIR -18 244 34 370 297 88 20 chrX 42988426 42988574 -133985566 - MIR SINE MIR 0 262 105 2144 196 39 61 chrX 42988574 42989135 -133985005 - MLT2B3 LTR ERVL -5 549 1 246 319 14 14 chrX 42989159 42989228 -133984912 - MIR SINE MIR -180 82 14 2050 17 0 0 chrX 42989308 42989540 -133984600 - L1PA3 LINE L1 -1073 5073 4842 8109 22 7 0 chrX 42989540 42990610 -133983530 + L1PA3 LINE L1 5071 6152 -3 1206 308 75 15 chrX 42990627 42991105 -133983035 + L2 LINE L2 2805 3311 -2 364 342 61 52 chrX 42991114 42991345 -133982795 - L2 LINE L2 -13 3259 3027 637 237 111 21 chrX 42991970 42992160 -133981980 + MIR SINE MIR 53 259 -3 25 31 0 0 chrX 42992594 42992626 -133981514 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chrX 42992756 42992788 -133981352 + (TG)n Simple_repeat Simple_repeat 1 32 0 820 181 107 52 chrX 42992788 42993130 -133981010 - LTR7 LTR ERV1 -46 404 1 3840 100 11 12 chrX 42993130 42993688 -133980452 - HERVH LTR ERV1 0 7713 7157 1661 142 0 0 chrX 42993681 42993942 -133980198 - HERVH LTR ERV1 -1697 6016 5756 * 4126 146 6 16 chrX 42993932 42995204 -133978936 - HERVH LTR ERV1 -1925 4729 3357 12997 128 36 23 chrX 42995204 42997680 -133976460 - HERVH LTR ERV1 -4883 2830 1 742 93 0 19 chrX 42997680 42997787 -133976353 - LTR7 LTR ERV1 0 450 346 561 224 168 52 chrX 42998044 42998276 -133975864 - MIR SINE MIR -2 260 2 2164 125 3 3 chrX 42999169 42999474 -133974666 - AluSx SINE Alu -7 305 1 224 254 0 42 chrX 42999510 42999581 -133974559 + L2 LINE L2 2929 2996 -276 617 293 79 35 chrX 42999588 43000279 -133973861 - L1ME LINE L1 -452 5669 4954 1674 124 11 11 chrX 43000405 43000671 -133973469 + L1MA8 LINE L1 5897 6162 -129 8634 126 53 26 chrX 43000735 43002183 -133971957 - Tigger3(Golem) DNA MER2_type 0 3029 1543 7373 172 39 18 chrX 43002197 43002309 -133971831 + L1PB4 LINE L1 3734 3842 -2461 1015 120 0 0 chrX 43002309 43002442 -133971698 + FLAM_C SINE Alu 1 133 0 7373 172 39 18 chrX 43002442 43002513 -133971627 + L1PB4 LINE L1 3842 3910 -2393 1900 152 0 3 chrX 43002513 43002809 -133971331 + AluJb SINE Alu 3 297 -15 7373 172 39 18 chrX 43002809 43005021 -133969119 + L1PB4 LINE L1 3910 6300 -3 348 314 8 17 chrX 43005069 43005187 -133968953 + MIR SINE MIR 13 129 -133 380 292 59 45 chrX 43005197 43005240 -133968900 - MER112 DNA MER1_type -55 205 164 2339 83 13 10 chrX 43005240 43005552 -133968588 + AluSq SINE Alu 1 313 0 380 292 59 45 chrX 43005552 43005710 -133968430 - MER112 DNA MER1_type -96 164 1 478 250 37 43 chrX 43006449 43006613 -133967527 - MIR SINE MIR -65 197 35 308 254 142 15 chrX 43006649 43006783 -133967357 + MIR SINE MIR 72 222 -40 2454 157 46 10 chrX 43006910 43007323 -133966817 + MSTA LTR MaLR 1 428 0 799 231 95 13 chrX 43007781 43008009 -133966131 - MIR SINE MIR -1 261 16 300 313 10 21 chrX 43008249 43008345 -133965795 + L2 LINE L2 3146 3240 -32 378 61 45 0 chrX 43008398 43008464 -133965676 + GA-rich Low_complexity Low_complexity 2 70 0 596 312 15 10 chrX 43009050 43009249 -133964891 + MIR SINE MIR 61 260 -2 233 241 152 0 chrX 43009763 43009842 -133964298 - MIR SINE MIR -1 261 171 613 238 67 36 chrX 43009872 43010095 -133964045 + L1MC5 LINE L1 7697 7926 -35 577 289 96 8 chrX 43010167 43010422 -133963718 + L2 LINE L2 2736 3009 -304 42715 60 8 0 chrX 43010456 43016564 -133957576 - L1PA4 LINE L1 0 6155 1 619 306 78 17 chrX 43016565 43016859 -133957281 + L2 LINE L2 2994 3305 -8 7413 173 106 26 chrX 43017609 43019143 -133954997 + MER52A LTR ERV1 1 1755 0 308 274 52 15 chrX 43019419 43019560 -133954580 + MIR SINE MIR 32 177 -72 365 322 75 14 chrX 43019616 43019762 -133954378 + L2 LINE L2 3102 3256 -16 4432 218 33 6 chrX 43020883 43021935 -133952205 - L1 LINE L1 -981 5165 4085 3884 162 41 32 chrX 43021935 43022817 -133951323 + L1PB3 LINE L1 3156 4045 -2101 * 7066 123 58 45 chrX 43022813 43023991 -133950149 - L1PBa LINE L1 -5504 1359 160 4434 115 8 3 chrX 43023991 43024600 -133949540 - LTR9 LTR ERV1 0 612 1 7066 123 58 45 chrX 43024600 43024760 -133949380 - L1PBa LINE L1 -6703 160 4 9969 230 26 14 chrX 43024771 43024932 -133949208 - L1P LINE L1 -749 5397 5239 2658 112 44 5 chrX 43024932 43025344 -133948796 - MSTA LTR MaLR 0 428 1 9969 230 26 14 chrX 43025344 43027961 -133946179 - L1P LINE L1 -907 5239 2585 6142 154 13 5 chrX 43027974 43029769 -133944371 - L1MA2 LINE L1 0 6304 4496 4293 167 34 32 chrX 43029766 43030839 -133943301 + L1PB3 LINE L1 5078 6152 -2 * 39222 66 2 1 chrX 43031473 43037620 -133936520 + L1PA4 LINE L1 3 6155 0 224 277 0 0 chrX 43037756 43037803 -133936337 + polypurine Low_complexity Low_complexity 2 48 0 5820 45 1 0 chrX 43038596 43039302 -133934838 + L1PA3 LINE L1 5449 6155 0 8527 201 26 9 chrX 43039469 43039594 -133934546 - L1PA13 LINE L1 -4 6875 6754 4006 199 23 50 chrX 43039594 43040590 -133933550 - LTR5 LTR ERVK 0 969 1 8527 201 26 9 chrX 43040590 43043173 -133930967 - L1PA13 LINE L1 -125 6754 4140 4634 141 65 9 chrX 43043173 43045032 -133929108 - L1PA13 LINE L1 -4754 2109 1 * 5104 281 35 35 chrX 43045021 43047682 -133926458 - L1PA12 LINE L1 -4940 2641 244 8369 105 89 0 chrX 43048039 43049990 -133924150 + L1PA8 LINE L1 4124 6159 -13 26 50 0 0 chrX 43049990 43050030 -133924110 + AT_rich Low_complexity Low_complexity 1 40 0 40911 49 3 3 chrX 43050142 43056299 -133917841 - L1PA3 LINE L1 -3 6152 2 396 0 0 0 chrX 43056954 43056998 -133917142 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 81 0 0 chrX 43057585 43057647 -133916493 + AT_rich Low_complexity Low_complexity 1 62 0 216 232 29 72 chrX 43057806 43057875 -133916265 - MIR SINE MIR -61 147 82 22 35 0 0 chrX 43058116 43058145 -133915995 + AT_rich Low_complexity Low_complexity 1 29 0 5844 111 20 0 chrX 43058379 43059549 -133914591 - L1PA15 LINE L1 -6 6159 4987 8090 216 15 16 chrX 43059553 43061632 -133912508 - L1PA15 LINE L1 -1282 4864 2788 22 35 0 0 chrX 43061937 43061966 -133912174 + AT_rich Low_complexity Low_complexity 1 29 0 306 349 0 0 chrX 43061982 43062091 -133912049 + (CACCAT)n Simple_repeat Simple_repeat 1 109 0 2501 112 0 3 chrX 43062376 43062732 -133911408 - THE1A LTR MaLR 0 355 1 1412 43 5 0 chrX 43062732 43062916 -133911224 - THE1A-int LTR MaLR 0 1580 1396 * 6130 107 10 9 chrX 43062904 43063827 -133910313 - THE1A-int LTR MaLR -656 924 1 2751 77 6 0 chrX 43063827 43064180 -133909960 - THE1A LTR MaLR 0 355 1 1660 194 20 20 chrX 43064574 43064977 -133909163 - MER65A LTR ERV1 0 445 43 229 88 0 0 chrX 43065011 43065045 -133909095 - MER65B LTR ERV1 -492 39 6 186 43 0 0 chrX 43065742 43065765 -133908375 + (A)n Simple_repeat Simple_repeat 1 23 0 271 258 112 11 chrX 43065790 43065879 -133908261 - L2 LINE L2 -2 3311 3214 335 374 37 11 chrX 43066028 43066215 -133907925 - L2 LINE L2 -193 3079 2888 825 255 53 0 chrX 43066419 43066666 -133907474 + MIR SINE MIR 2 261 -1 314 316 65 39 chrX 43066691 43066922 -133907218 - L2 LINE L2 -721 2593 2357 527 284 156 18 chrX 43067308 43067526 -133906614 + MIR SINE MIR 15 262 0 250 245 204 10 chrX 43067754 43067852 -133906288 + L2 LINE L2 3197 3313 0 7060 176 21 14 chrX 43067893 43069336 -133904804 + L1PA13 LINE L1 3858 5298 -865 2215 84 17 17 chrX 43069336 43069632 -133904508 + AluSg SINE Alu 1 296 -14 7060 176 21 14 chrX 43069632 43070501 -133903639 + L1PA13 LINE L1 5298 6160 -3 2680 120 20 29 chrX 43070552 43070886 -133903254 - MER4E LTR ERV1 0 779 444 4565 31 9 2 chrX 43070886 43071440 -133902700 - LTR6B LTR ERV1 0 558 1 2680 120 20 29 chrX 43071440 43071714 -133902426 - MER4E LTR ERV1 -335 444 1 937 237 11 0 chrX 43071944 43072130 -133902010 + MER5A DNA MER1_type 2 189 0 2417 93 29 44 chrX 43072435 43072598 -133901542 - MER4A LTR ERV1 0 664 500 2710 83 95 2 chrX 43072598 43073008 -133901132 + LTR7 LTR ERV1 1 448 -2 2417 93 29 44 chrX 43073008 43073254 -133900886 - MER4A LTR ERV1 -164 500 261 574 112 10 10 chrX 43073254 43073352 -133900788 - MER4A LTR ERV1 -566 98 1 5479 235 48 18 chrX 43073546 43075035 -133899105 + L1M3de LINE L1 2011 3454 -4111 180 0 0 0 chrX 43075035 43075055 -133899085 + (TAA)n Simple_repeat Simple_repeat 2 21 0 5479 235 48 18 chrX 43075055 43076090 -133898050 + L1M3de LINE L1 3454 4456 -3109 2039 119 4 0 chrX 43076090 43076368 -133897772 - AluSg SINE Alu -19 291 13 5479 235 48 18 chrX 43076368 43077330 -133896810 + L1M3de LINE L1 4456 5595 -1970 11115 151 40 9 chrX 43077330 43079781 -133894359 - Tigger2 DNA MER2_type -124 2594 1 2563 206 39 69 chrX 43079782 43079861 -133894279 - L1 LINE L1 -3810 3755 3675 2072 155 119 13 chrX 43079861 43080248 -133893892 + MSTA LTR MaLR 1 428 0 2094 112 0 24 chrX 43080253 43080571 -133893569 - AluSc SINE Alu 0 309 1 2563 206 39 69 chrX 43080571 43081502 -133892638 - L1 LINE L1 -3894 3671 2771 1707 174 11 0 chrX 43081502 43081777 -133892363 - AluJo SINE Alu -30 282 5 2563 206 39 69 chrX 43081777 43081827 -133892313 - L1 LINE L1 -4794 2771 2721 937 199 22 9 chrX 43081828 43082054 -133892086 - L1 LINE L1 -4992 2497 2269 251 286 0 0 chrX 43082084 43082147 -133891993 - L1 LINE L1 -5525 1964 1902 1506 252 72 45 chrX 43082241 43082757 -133891383 - L1 LINE L1 -6494 995 466 406 179 26 0 chrX 43082774 43082852 -133891288 - L1MD2 LINE L1 -213 6146 6067 20849 178 19 21 chrX 43082861 43084695 -133889445 + L1PA14 LINE L1 829 2665 -4934 216 0 0 0 chrX 43084695 43084719 -133889421 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 20849 178 19 21 chrX 43084719 43088833 -133885307 + L1PA14 LINE L1 2665 7594 -5 1124 258 69 27 chrX 43088834 43089396 -133884744 - L1MDb LINE L1 -2309 4097 3512 212 57 0 29 chrX 43089402 43089437 -133884703 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5203 28 29 0 chrX 43089437 43090086 -133884054 - L1PA3 LINE L1 -24 6131 5464 20387 43 3 0 chrX 43090088 43093404 -133880736 - L1PA5 LINE L1 -6 6148 2823 7228 126 2 0 chrX 43093408 43094522 -133879618 - L1P LINE L1 -5030 1116 1 4269 230 68 30 chrX 43094538 43095437 -133878703 - L1MDb LINE L1 -2898 3508 2645 1785 202 34 32 chrX 43095437 43095903 -133878237 - MLT1C LTR MaLR 0 467 1 4269 230 68 30 chrX 43095903 43096650 -133877490 - L1MDb LINE L1 -3761 2645 1928 2086 129 129 21 chrX 43096650 43097036 -133877104 - MSTA LTR MaLR 0 428 1 4269 230 68 30 chrX 43097036 43097703 -133876437 - L1MDb LINE L1 -4478 1928 1288 2051 123 0 36 chrX 43097703 43098012 -133876128 - AluSq SINE Alu -15 298 1 4269 230 68 30 chrX 43098012 43098494 -133875646 - L1MDb LINE L1 -5118 1288 588 234 0 0 0 chrX 43098512 43098538 -133875602 + (CCA)n Simple_repeat Simple_repeat 1 26 0 443 196 20 0 chrX 43098622 43098724 -133875416 - L1MDb LINE L1 -5374 1035 932 1566 271 59 22 chrX 43098833 43099343 -133874797 - L1MDb LINE L1 -5872 537 9 38098 64 25 2 chrX 43099579 43105567 -133868573 - L1PA3 LINE L1 -27 6128 2 10599 131 12 91 chrX 43105568 43107810 -133866330 - L1P LINE L1 -4071 2075 11 730 137 0 0 chrX 43107816 43107940 -133866200 - L1P LINE L1 -2660 3486 3363 * 19020 91 4 2 chrX 43107938 43111348 -133862792 + L1PA7 LINE L1 2490 5907 -247 7730 112 40 4 chrX 43111450 43112722 -133861418 - MER41-int LTR ERV1 -315 5631 4314 28928 118 9 57 chrX 43112730 43119074 -133855066 + L1PA7 LINE L1 12 6037 -117 25028 83 9 9 chrX 43119204 43122274 -133851866 - L1P LINE L1 -757 5389 2339 188 0 74 0 chrX 43122274 43122301 -133851839 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 25028 83 9 9 chrX 43122301 43124133 -133850007 - L1P LINE L1 -3807 2339 508 14680 66 19 2 chrX 43126024 43128853 -133845287 - L1PA6 LINE L1 -2 6152 3276 559 168 10 35 chrX 43128859 43129680 -133844460 + (TA)n Simple_repeat Simple_repeat 1 800 0 21 0 0 0 chrX 43130818 43130839 -133843301 + AT_rich Low_complexity Low_complexity 1 21 0 28959 52 3 1 chrX 43131547 43136213 -133837927 + L1PA4 LINE L1 1483 6155 0 224 277 0 0 chrX 43136349 43136396 -133837744 + polypurine Low_complexity Low_complexity 2 48 0 720 162 185 6 chrX 43136715 43136888 -133837252 - MSTA LTR MaLR -224 204 1 201 74 0 0 chrX 43136895 43136922 -133837218 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 355 91 62 chrX 43137376 43137618 -133836522 + L2 LINE L2 3017 3265 -7 650 259 92 6 chrX 43138193 43138367 -133835773 + MIR SINE MIR 7 195 -67 361 288 0 42 chrX 43139015 43139133 -133835007 + MIR SINE MIR 101 213 -49 466 207 36 21 chrX 43141386 43141526 -133832614 + L1MCa LINE L1 134 275 -6151 3415 89 16 2 chrX 43141526 43142019 -133832121 + MER41A LTR ERV1 1 500 -54 5257 128 44 21 chrX 43142094 43144403 -133829737 + MER41A-int LTR ERV1 1 2943 -2072 3894 261 44 24 chrX 43194426 43197488 -133776652 - L1PA13 LINE L1 -3223 3574 1 7194 227 20 18 chrX 43197501 43197549 -133776591 - L1P LINE L1 -844 5302 5256 8464 46 8 0 chrX 43197549 43198510 -133775630 - LTR5 LTR ERVK 0 969 1 7194 227 20 18 chrX 43198510 43200609 -133773531 - L1P LINE L1 -890 5256 3156 393 290 43 79 chrX 43200651 43200954 -133773186 - LTR67 LTR ERVL 0 557 266 758 325 103 21 chrX 43201115 43201648 -133772492 + L2 LINE L2 1465 2041 -1273 316 363 13 32 chrX 43201648 43201805 -133772335 + L2 LINE L2 2664 2817 -497 566 336 134 36 chrX 43201881 43202189 -133771951 + L2 LINE L2 2824 3191 -122 384 22 0 0 chrX 43202189 43202234 -133771906 + (TG)n Simple_repeat Simple_repeat 2 46 0 566 336 134 36 chrX 43202234 43202371 -133771769 + L2 LINE L2 3191 3313 0 262 261 43 14 chrX 43202373 43202442 -133771698 + L2 LINE L2 3243 3313 0 248 389 30 15 chrX 43202635 43202766 -133771374 - L2 LINE L2 -356 2957 2825 1883 111 0 64 chrX 43202888 43203186 -133770954 + AluSx SINE Alu 1 279 -33 351 0 0 0 chrX 43203187 43203226 -133770914 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 428 241 19 28 chrX 43203963 43204071 -133770069 + MIR SINE MIR 156 262 0 1344 303 44 8 chrX 43204096 43204597 -133769543 - LTR33 LTR ERVL -2 519 1 1018 93 0 0 chrX 43204800 43204964 -133769176 - AluSg/x SINE Alu 0 318 155 525 347 126 18 chrX 43204975 43205373 -133768767 - L1PA13 LINE L1 -5314 1473 1033 3462 254 32 23 chrX 43205408 43206318 -133767822 - L1PA13 LINE L1 -5869 918 1 991 167 5 5 chrX 43206326 43206588 -133767552 - L1M1 LINE L1 -743 5403 5182 * 2527 230 119 36 chrX 43206577 43207468 -133766672 - L1M2b LINE L1 -5937 1272 13 861 234 60 47 chrX 43207473 43207609 -133766531 - Charlie4a DNA MER1_type -1505 456 323 865 62 108 0 chrX 43207609 43207738 -133766402 + L1PA11 LINE L1 6031 6173 -1 861 234 60 47 chrX 43207738 43207894 -133766246 - Charlie4a DNA MER1_type -1638 323 155 180 0 0 0 chrX 43207894 43207914 -133766226 + (TA)n Simple_repeat Simple_repeat 1 20 0 861 234 60 47 chrX 43207914 43208000 -133766140 - Charlie4a DNA MER1_type -1806 155 72 16736 193 67 25 chrX 43208000 43210613 -133763527 + L1PA11 LINE L1 1 2504 -3957 180 0 0 0 chrX 43210613 43210633 -133763507 + (CAA)n Simple_repeat Simple_repeat 2 21 0 16736 193 67 25 chrX 43210633 43212890 -133761250 + L1PA11 LINE L1 2504 5214 -1247 2560 111 10 10 chrX 43212889 43213287 -133760853 + THE1C-int LTR MaLR 1183 1580 0 * 2220 128 19 24 chrX 43213287 43213663 -133760477 + THE1C LTR MaLR 1 374 -1 5960 97 23 23 chrX 43213664 43214943 -133759197 + L1PA11 LINE L1 5210 6488 -1 247 235 73 0 chrX 43214943 43215011 -133759129 - Charlie4a DNA MER1_type -429 79 7 429 239 116 43 chrX 43215077 43215314 -133758826 - L1ME LINE L1 -585 5566 5309 180 258 0 76 chrX 43215457 43215523 -133758617 - L2 LINE L2 -643 2671 2611 192 179 0 0 chrX 43215739 43215778 -133758362 + (TG)n Simple_repeat Simple_repeat 2 40 0 460 282 175 29 chrX 43215879 43216085 -133758055 + MIR SINE MIR 22 257 -5 568 275 70 15 chrX 43216290 43216490 -133757650 - MIR SINE MIR 0 262 52 239 367 25 0 chrX 43216499 43216578 -133757562 - MIR SINE MIR -92 116 36 22 56 0 0 chrX 43216647 43216683 -133757457 + AT_rich Low_complexity Low_complexity 1 36 0 31 36 0 18 chrX 43217649 43217683 -133756457 + AT_rich Low_complexity Low_complexity 1 35 -20 2346 147 35 5 chrX 43217683 43218106 -133756034 - L1MA4 LINE L1 -6 6294 5859 31 36 0 18 chrX 43218106 43218127 -133756013 + AT_rich Low_complexity Low_complexity 35 55 0 213 232 54 18 chrX 43218361 43218473 -133755667 + (TA)n Simple_repeat Simple_repeat 2 117 0 378 119 15 0 chrX 43218476 43218543 -133755597 - MER116 DNA Mariner -4 76 9 206 332 24 87 chrX 43218697 43218905 -133755235 - L3b LINE CR1 -93 1490 1296 324 344 67 35 chrX 43220085 43220367 -133753773 - L2 LINE L2 -610 2704 2414 228 277 6 113 chrX 43220593 43220752 -133753388 + L2 LINE L2 2845 2986 -286 360 270 61 17 chrX 43220786 43220901 -133753239 - L1ME3A LINE L1 -10 6160 6041 1170 241 7 62 chrX 43220916 43221351 -133752789 - L1ME3A LINE L1 -203 5967 5557 1602 231 10 60 chrX 43221877 43222040 -133752100 + L1M4 LINE L1 8 178 -6364 2510 60 0 19 chrX 43222040 43222357 -133751783 + AluY SINE Alu 1 311 0 1602 231 10 60 chrX 43222357 43222696 -133751444 + L1M4 LINE L1 178 485 -6057 423 227 10 0 chrX 43222732 43222829 -133751311 + L1M4 LINE L1 486 583 -5959 252 219 9 48 chrX 43222837 43222942 -133751198 + L1M4 LINE L1 2287 2387 -4259 605 239 124 17 chrX 43223007 43223398 -133750742 + L1M4 LINE L1 2540 2986 -3658 561 246 28 17 chrX 43223391 43223570 -133750570 - L1M4 LINE L1 -6349 193 13 * 511 281 77 30 chrX 43223592 43223891 -133750249 - L1MC/D LINE L1 -1990 5818 5506 26 0 0 0 chrX 43223891 43223917 -133750223 + AT_rich Low_complexity Low_complexity 1 26 0 1724 132 8 8 chrX 43223976 43224234 -133749906 - AluSx SINE Alu -5 307 50 2768 122 52 23 chrX 43224235 43224711 -133749429 - LTR2B LTR ERV1 0 490 1 35938 192 11 7 chrX 43224723 43231493 -133742647 - HERVE LTR ERV1 -1017 6796 1 2916 104 32 56 chrX 43231493 43231995 -133742145 - LTR2B LTR ERV1 0 490 1 329 113 0 19 chrX 43231995 43232048 -133742092 - AluSx SINE Alu -250 52 1 2432 243 26 9 chrX 43232099 43232787 -133741353 - L1ME1 LINE L1 -1 6165 5466 423 189 81 0 chrX 43232793 43232904 -133741236 - L1MA7 LINE L1 -11 6280 6161 3692 184 37 16 chrX 43232905 43234273 -133739867 - L1MA7 LINE L1 -238 6053 4665 5449 212 104 49 chrX 43234296 43234520 -133739620 - L1MA5A LINE L1 0 6297 6087 2763 19 0 0 chrX 43234520 43234830 -133739310 - AluY SINE Alu -1 310 1 5449 212 104 49 chrX 43234830 43235876 -133738264 - L1MA5A LINE L1 -210 6087 5100 718 122 0 0 chrX 43235876 43235991 -133738149 - L1MA5A LINE L1 0 6297 6183 5449 212 104 49 chrX 43235991 43237417 -133736723 - L1MA5A LINE L1 -1197 5100 3428 3222 115 9 20 chrX 43237450 43237989 -133736151 - L1MA1 LINE L1 -1 6301 5769 18924 185 28 28 chrX 43237989 43240895 -133733245 - L1PA11 LINE L1 -9 6480 3574 1897 129 37 7 chrX 43240895 43241190 -133732950 - AluSq SINE Alu -9 304 1 18924 185 28 28 chrX 43241190 43241443 -133732697 - L1PA11 LINE L1 -2915 3574 3322 2072 123 4 0 chrX 43241443 43241762 -133732378 - AluSc SINE Alu 0 320 1 18924 185 28 28 chrX 43241762 43244642 -133729498 - L1PA11 LINE L1 -3167 3322 467 5150 223 52 10 chrX 43244672 43246122 -133728018 - L1 LINE L1 -984 5162 3652 4200 115 95 6 chrX 43246156 43247022 -133727118 - L1PBa LINE L1 -3974 2888 1898 39430 47 24 1 chrX 43247041 43253056 -133721084 - L1PA4 LINE L1 0 6155 1 607 259 0 0 chrX 43253056 43253214 -133720926 - L1PA13 LINE L1 -2263 4534 4377 238 176 0 0 chrX 43253314 43253365 -133720775 - L1PA13 LINE L1 -3055 3742 3692 329 119 0 17 chrX 43253365 43253458 -133720682 - AluS SINE Alu 0 301 231 9048 239 45 22 chrX 43253461 43255687 -133718453 - L1PA13 LINE L1 -3113 3684 1329 3221 26 0 5 chrX 43255687 43256071 -133718069 + L1PA2 LINE L1 5774 6155 0 9048 239 45 22 chrX 43256071 43257399 -133716741 - L1PA13 LINE L1 -5468 1329 33 1089 110 0 0 chrX 43257417 43257580 -133716560 + (TA)n Simple_repeat Simple_repeat 1 163 0 6444 79 2 2 chrX 43257598 43259295 -133714845 - L1PA7 LINE L1 -2 6467 4784 20570 117 22 17 chrX 43259298 43263171 -133710969 - L1PA7 LINE L1 -1848 4613 706 245 241 0 0 chrX 43263174 43263228 -133710912 - L1M2 LINE L1 -4197 2652 2599 229 218 26 0 chrX 43263228 43263306 -133710834 + (TA)n Simple_repeat Simple_repeat 2 81 0 238 213 0 64 chrX 43263310 43263404 -133710736 + L1MC4 LINE L1 6614 6701 -1341 301 161 129 0 chrX 43263430 43263492 -133710648 - L1M2 LINE L1 -6377 472 403 11030 228 61 4 chrX 43263493 43266423 -133707717 - L1 LINE L1 -3707 3141 43 301 184 0 0 chrX 43266417 43266466 -133707674 + L1M2 LINE L1 4 52 -6797 * 357 133 17 0 chrX 43266466 43266526 -133707614 - L1 LINE L1 -6787 62 2 279 343 42 17 chrX 43266697 43266986 -133707154 + L1PA12 LINE L1 8 303 -7278 4561 63 5 8 chrX 43269091 43269690 -133704450 + L1PA8 LINE L1 5576 6172 0 2295 125 14 3 chrX 43269692 43270053 -133704087 + L1PA8A LINE L1 5766 6130 -1 21 0 0 0 chrX 43270668 43270689 -133703451 + AT_rich Low_complexity Low_complexity 1 21 0 928 323 46 58 chrX 43270793 43271613 -133702527 - MER110-int LTR ERV1 -1685 2962 2153 3616 213 32 41 chrX 43271944 43272244 -133701896 - L1MB4 LINE L1 -3 6413 6112 2587 33 0 3 chrX 43272244 43272543 -133701597 - AluY SINE Alu -13 298 1 3616 213 32 41 chrX 43272543 43273005 -133701135 - L1MB4 LINE L1 -304 6112 5648 2002 128 3 7 chrX 43273005 43273303 -133700837 - AluSq SINE Alu -15 298 2 3616 213 32 41 chrX 43273303 43274214 -133699926 - L1MB4 LINE L1 -768 5648 4769 847 110 0 0 chrX 43274214 43274341 -133699799 - L1MA2 LINE L1 0 6304 6178 3616 213 32 41 chrX 43274341 43274618 -133699522 - L1MB4 LINE L1 -1647 4769 4491 3517 114 19 5 chrX 43274631 43275199 -133698941 - L1MA2 LINE L1 0 6304 5729 1579 47 0 0 chrX 43275214 43275406 -133698734 - L1PA3 LINE L1 -150 6005 5814 * 35279 45 2 1 chrX 43275400 43280603 -133693537 - L1PA3 LINE L1 0 6155 950 3264 281 48 13 chrX 43280627 43282006 -133692134 - L1MB4 LINE L1 -1880 4502 3076 1677 240 48 9 chrX 43282029 43282470 -133691670 - L1MB4 LINE L1 -4733 1651 1194 2045 170 3 15 chrX 43282877 43283218 -133690922 + MER1B DNA MER1_type 1 337 0 1383 210 15 15 chrX 43283361 43283633 -133690507 + AluJb SINE Alu 7 278 -34 245 50 0 25 chrX 43283634 43283674 -133690466 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1914 233 87 23 chrX 43284465 43284946 -133689194 - MLT2B1 LTR ERVL 0 520 9 1196 243 16 0 chrX 43285243 43285498 -133688642 - MER90 LTR ERV1 -9 566 308 219 36 0 0 chrX 43285945 43285973 -133688167 + (TAG)n Simple_repeat Simple_repeat 1 28 0 181 234 0 94 chrX 43286441 43286488 -133687652 - L2 LINE L2 -2 3311 3270 2655 140 17 0 chrX 43286488 43286909 -133687231 + MSTA LTR MaLR 1 428 0 181 234 0 94 chrX 43286909 43286925 -133687215 - L2 LINE L2 -43 3270 3254 2907 242 43 8 chrX 43288740 43289456 -133684684 + L1MCa LINE L1 158 898 -5666 1137 223 34 10 chrX 43289463 43289759 -133684381 + L1MCa LINE L1 780 1082 -4963 805 124 33 7 chrX 43289754 43289907 -133684233 - L1M1 LINE L1 -827 5476 5320 * 4390 179 60 21 chrX 43289914 43290332 -133683808 - L1PB4 LINE L1 -5 6151 5751 2128 133 16 37 chrX 43290332 43290715 -133683425 + THE1C LTR MaLR 1 375 0 4390 179 60 21 chrX 43290715 43290757 -133683383 - L1PB4 LINE L1 -405 5751 5712 2084 133 7 0 chrX 43290757 43291051 -133683089 - AluSx SINE Alu -16 296 1 4390 179 60 21 chrX 43291051 43292006 -133682134 - L1PB4 LINE L1 -444 5712 4677 4295 236 107 18 chrX 43292004 43293162 -133680978 + L1MCa LINE L1 1062 2115 -4449 * 411 21 0 0 chrX 43293162 43293210 -133680930 + (TG)n Simple_repeat Simple_repeat 1 48 0 4295 236 107 18 chrX 43293210 43294118 -133680022 + L1MCa LINE L1 2115 3316 -3248 5292 176 43 3 chrX 43294124 43295702 -133678438 + L1PB4 LINE L1 4503 6149 -7 801 236 111 16 chrX 43295689 43296066 -133678074 + L1MCa LINE L1 3302 3714 -2850 * 21 36 0 0 chrX 43296067 43296095 -133678045 + AT_rich Low_complexity Low_complexity 1 28 0 866 257 4 8 chrX 43296257 43296502 -133677638 + L1MCa LINE L1 4105 4348 -2216 272 216 0 0 chrX 43296516 43296567 -133677573 + FRAM/FAM SINE Alu 26 76 -90 813 199 84 0 chrX 43296590 43296756 -133677384 - AluJb SINE Alu -3 309 130 198 0 0 0 chrX 43296770 43296792 -133677348 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1764 38 5 0 chrX 43296792 43297004 -133677136 - L1PA3 LINE L1 -18 6137 5925 723 226 88 11 chrX 43297008 43297189 -133676951 + L1MCa LINE L1 4359 4553 -2011 2030 177 44 25 chrX 43297192 43297599 -133676541 + MSTB1 LTR MaLR 18 432 0 2823 185 15 15 chrX 43297646 43298236 -133675904 + L1M2 LINE L1 3797 4386 -1760 257 139 0 0 chrX 43298238 43298274 -133675866 + L1M2 LINE L1 5609 5644 -668 10320 156 24 14 chrX 43298277 43300094 -133674046 + Tigger1 DNA MER2_type 2 1835 -583 550 153 15 23 chrX 43300095 43300226 -133673914 - L1MB8 LINE L1 0 6178 6049 * 5001 159 9 13 chrX 43300222 43301986 -133672154 - L1PA16 LINE L1 -6 6160 4379 1431 65 0 0 chrX 43302008 43302193 -133671947 - L1PA5 LINE L1 0 6154 5970 528 170 128 0 chrX 43302193 43302287 -133671853 - MER21B LTR ERV1 -547 316 211 33359 96 10 10 chrX 43302287 43307111 -133667029 - L1P LINE L1 -1313 4833 11 4336 236 55 45 chrX 43307122 43308371 -133665769 - L1M4 LINE L1 -1651 4993 3758 1721 203 7 0 chrX 43308371 43308667 -133665473 + AluJb SINE Alu 1 298 -14 4336 236 55 45 chrX 43308667 43309040 -133665100 - L1M4 LINE L1 -2886 3758 3390 3401 62 20 0 chrX 43309040 43309489 -133664651 - L1PA10 LINE L1 -4 6164 5707 4336 236 55 45 chrX 43309489 43310652 -133663488 - L1M4 LINE L1 -3254 3390 2240 7016 58 2 2 chrX 43310652 43311744 -133662396 + L1PA7 LINE L1 5058 6149 -5 4336 236 55 45 chrX 43311744 43312187 -133661953 - L1M4 LINE L1 -4404 2240 1803 2014 119 53 0 chrX 43312187 43312472 -133661668 + AluSx SINE Alu 1 300 -12 4336 236 55 45 chrX 43312472 43312809 -133661331 - L1M4 LINE L1 -4841 1803 842 198 0 0 0 chrX 43312811 43312833 -133661307 + (T)n Simple_repeat Simple_repeat 1 22 0 225 204 0 0 chrX 43312846 43312890 -133661250 + A-rich Low_complexity Low_complexity 1 44 0 336 146 0 101 chrX 43312965 43313054 -133661086 - L1P LINE L1 -3449 2697 2618 * 1664 267 39 12 chrX 43313051 43313568 -133660572 - L1P3 LINE L1 -4861 1014 484 302 301 75 64 chrX 43313613 43313786 -133660354 + MIR3 SINE MIR 34 208 0 204 346 66 37 chrX 43314105 43314241 -133659899 + MIR3 SINE MIR 16 155 -53 237 33 0 0 chrX 43314358 43314388 -133659752 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 703 204 0 0 chrX 43314389 43314502 -133659638 + FLAM_A SINE Alu 1 113 -29 21 36 0 0 chrX 43314533 43314561 -133659579 + AT_rich Low_complexity Low_complexity 1 28 0 799 283 11 2 chrX 43314975 43315203 -133658937 - MIR SINE MIR 0 262 34 1235 120 70 33 chrX 43315822 43315891 -133658249 - L1MA9 LINE L1 -5 6307 6242 297 0 0 0 chrX 43315891 43315924 -133658216 + (TA)n Simple_repeat Simple_repeat 1 33 0 1235 120 70 33 chrX 43315924 43316095 -133658045 - L1MA9 LINE L1 -70 6242 6058 696 185 0 48 chrX 43316250 43316396 -133657744 + FLAM_C SINE Alu 1 139 -4 286 226 16 16 chrX 43316557 43316619 -133657521 - L2 LINE L2 -4 3268 3207 434 249 195 78 chrX 43317033 43317076 -133657064 + MIR SINE MIR 34 71 -191 1651 162 87 29 chrX 43317076 43317421 -133656719 - MLT1A1 LTR MaLR 0 365 1 434 249 195 78 chrX 43317421 43317582 -133656558 + MIR SINE MIR 71 262 0 233 331 71 18 chrX 43317707 43317860 -133656280 - MIR SINE MIR -15 247 83 2172 102 7 0 chrX 43318672 43318956 -133655184 - AluSg SINE Alu -24 286 1 2540 62 0 0 chrX 43320161 43320467 -133653673 + AluY SINE Alu 1 306 -5 210 205 0 0 chrX 43321149 43321188 -133652952 + L2 LINE L2 3267 3305 -8 362 291 29 10 chrX 43321539 43321642 -133652498 + MIR SINE MIR 38 142 -120 23 0 0 0 chrX 43321832 43321855 -133652285 + AT_rich Low_complexity Low_complexity 1 23 0 887 135 0 0 chrX 43322019 43322145 -133651995 - AluJb SINE Alu -186 126 1 587 21 63 11 chrX 43322492 43322587 -133651553 + (GAAA)n Simple_repeat Simple_repeat 2 101 0 351 165 372 8 chrX 43323082 43323203 -133650937 - MIR SINE MIR 0 262 98 219 286 61 10 chrX 43323223 43323321 -133650819 + MIR SINE MIR 160 262 0 629 282 34 15 chrX 43323418 43323624 -133650516 + L2 LINE L2 3104 3313 0 424 311 0 0 chrX 43323615 43323721 -133650419 - MIR SINE MIR -156 106 1 * 484 271 57 26 chrX 43325040 43325232 -133648908 + MIR SINE MIR 65 262 0 1590 282 102 24 chrX 43325417 43325997 -133648143 + L2 LINE L2 2377 3060 -253 2447 96 3 0 chrX 43325997 43326309 -133647831 - AluSq SINE Alu 0 313 1 1590 282 102 24 chrX 43326309 43326531 -133647609 + L2 LINE L2 3060 3263 -50 1705 172 27 20 chrX 43326643 43326939 -133647201 + AluJb SINE Alu 1 298 -14 397 126 184 0 chrX 43326960 43327047 -133647093 + L1MA9 LINE L1 6209 6311 -1 13294 162 62 19 chrX 43328406 43334980 -133639160 + L1PA3 LINE L1 3 6881 0 9117 190 43 18 chrX 43334988 43335214 -133638926 + L1PA15 LINE L1 2849 3068 -3097 8518 33 3 0 chrX 43335214 43337022 -133637118 + L1PA3 LINE L1 4348 6155 0 9117 190 43 18 chrX 43337022 43340033 -133634107 + L1PA15 LINE L1 3068 6165 0 189 0 0 0 chrX 43340054 43340075 -133634065 + (A)n Simple_repeat Simple_repeat 1 21 0 301 276 53 26 chrX 43340075 43340227 -133633913 - L1ME LINE L1 -555 5566 5411 1595 175 62 10 chrX 43340232 43340523 -133633617 - AluSx SINE Alu -6 306 1 22 35 0 0 chrX 43340700 43340729 -133633411 + AT_rich Low_complexity Low_complexity 1 29 0 321 286 70 29 chrX 43340729 43340900 -133633240 - L1ME LINE L1 -1234 4912 4735 196 374 33 11 chrX 43341242 43341333 -133632807 + L2 LINE L2 2925 3017 -255 3360 286 75 15 chrX 43341441 43342810 -133631330 + L2 LINE L2 1850 3313 0 279 200 0 0 chrX 43343084 43343134 -133631006 + L2 LINE L2 3262 3311 -2 285 316 64 41 chrX 43343142 43343313 -133630827 + L3 LINE CR1 787 961 -616 2809 176 41 40 chrX 43343313 43343724 -133630416 + L1MB5 LINE L1 4869 5278 -896 2302 86 0 16 chrX 43343724 43344037 -133630103 + AluSg SINE Alu 1 308 -2 2176 106 0 0 chrX 43344045 43344349 -133629791 - AluSx SINE Alu 0 304 1 2809 176 41 40 chrX 43344349 43344940 -133629200 + L1MB5 LINE L1 5284 5874 -300 542 68 0 0 chrX 43344940 43345013 -133629127 + L1PA5 LINE L1 6078 6151 -3 6838 69 8 1 chrX 43345025 43345982 -133628158 + L1PA7 LINE L1 5192 6154 0 216 0 0 0 chrX 43346712 43346736 -133627404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1260 214 3 41 chrX 43346741 43346954 -133627186 + L1MB5 LINE L1 5861 6060 -114 2144 129 3 0 chrX 43346954 43347248 -133626892 + AluSx SINE Alu 2 296 -16 1260 214 3 41 chrX 43347248 43347352 -133626788 + L1MB5 LINE L1 6060 6166 -8 2289 120 28 11 chrX 43347805 43348163 -133625977 - THE1B LTR MaLR 0 364 1 309 321 37 30 chrX 43348288 43348422 -133625718 - L2 LINE L2 -627 2687 2553 232 295 90 26 chrX 43348478 43348605 -133625535 - L2 LINE L2 -1009 2305 2165 1638 126 4 0 chrX 43348605 43348852 -133625288 + L1PA16 LINE L1 5910 6157 -9 232 295 90 26 chrX 43348852 43348880 -133625260 - L2 LINE L2 -1149 2165 2140 351 219 31 21 chrX 43348955 43349051 -133625089 + Charlie8 DNA MER1_type 85 181 -2236 188 289 118 26 chrX 43349689 43349765 -133624375 + L2 LINE L2 3197 3279 -34 411 271 52 0 chrX 43350011 43350107 -133624033 - MLT1F1 LTR MaLR -164 403 303 1473 308 43 66 chrX 43350197 43351152 -133622988 - L2 LINE L2 -229 3043 2107 365 340 29 30 chrX 43351226 43351405 -133622735 - L1 LINE L1 -3286 2860 2676 217 338 117 7 chrX 43352039 43352184 -133621956 - MIR SINE MIR -27 235 75 817 198 17 25 chrX 43352213 43352450 -133621690 - Charlie1a DNA MER1_type 0 1455 1221 759 224 45 0 chrX 43352468 43352624 -133621516 + FRAM SINE Alu 1 160 -16 742 205 0 0 chrX 43352624 43352780 -133621360 - Charlie1a DNA MER1_type -250 1205 1050 435 70 0 0 chrX 43352781 43352838 -133621302 - L1PA5 LINE L1 -2021 4125 4069 10087 35 0 0 chrX 43352838 43354871 -133619269 + L1PA5 LINE L1 4142 6151 -3 242 245 71 10 chrX 43354885 43354912 -133619228 - Charlie1a DNA MER1_type -1700 1061 1037 2609 150 32 26 chrX 43354912 43355418 -133618722 - L1PA16 LINE L1 -2 6164 5656 242 245 71 10 chrX 43355418 43355488 -133618652 - Charlie1a DNA MER1_type -1724 1037 958 2449 82 0 0 chrX 43355504 43355835 -133618305 - L1PA13 LINE L1 -19 6144 5814 2397 76 21 0 chrX 43355835 43356157 -133617983 - L1PA4 LINE L1 0 6155 5821 3713 67 0 2 chrX 43356171 43356651 -133617489 + L1PA5 LINE L1 5673 6151 -3 28167 59 1 1 chrX 43356665 43362174 -133611966 - L1PA4 LINE L1 -520 5635 1 3372 161 11 8 chrX 43362173 43363359 -133610781 - L1PA13 LINE L1 -336 5832 4643 * 247 384 43 85 chrX 43363454 43363712 -133610428 - L2 LINE L2 -6 3266 3020 288 220 22 22 chrX 43363747 43363838 -133610302 - MER112 DNA MER1_type -85 175 85 198 239 45 34 chrX 43363870 43363958 -133610182 - L3 LINE CR1 -734 843 755 264 130 0 0 chrX 43363959 43364005 -133610135 + (T)n Simple_repeat Simple_repeat 1 46 0 3232 16 0 0 chrX 43364008 43364394 -133609746 - L1HS LINE L1 0 6155 5770 350 0 0 0 chrX 43364390 43364432 -133609708 + L1P2 LINE L1 5711 5752 -402 * 434 222 10 0 chrX 43364427 43364526 -133609614 - L1P LINE L1 -1489 4657 4558 368 194 0 0 chrX 43364536 43364603 -133609537 + L1PA12 LINE L1 967 1033 -6548 3027 230 99 23 chrX 43364603 43364843 -133609297 - Charlie1a DNA MER1_type -1783 978 758 1563 202 28 0 chrX 43364843 43365130 -133609010 + AluJo SINE Alu 3 297 -15 3027 230 99 23 chrX 43365130 43365797 -133608343 - Charlie1a DNA MER1_type -2003 758 2 2016 136 7 23 chrX 43366375 43366685 -133607455 - AluSx SINE Alu -7 305 1 189 236 36 18 chrX 43366930 43366985 -133607155 - MIR SINE MIR -11 251 196 1597 192 159 0 chrX 43367431 43367759 -133606381 + L1 LINE L1 4245 4672 -1474 2984 51 3 0 chrX 43367759 43368129 -133606011 - L1PA5 LINE L1 -4 6150 5780 1597 192 159 0 chrX 43368129 43368273 -133605867 + L1 LINE L1 4672 4792 -1354 11687 164 102 7 chrX 43368281 43370636 -133603504 + L1MA3 LINE L1 778 3355 -4210 5851 58 1 0 chrX 43370636 43371371 -133602769 - L1PA5 LINE L1 -6 6148 5413 29064 65 4 1 chrX 43371371 43377466 -133596674 - L1PA4 LINE L1 -4 6151 41 34973 102 10 3 chrX 43377467 43382860 -133591280 - L1PA5 LINE L1 -727 5427 2 1310 153 51 0 chrX 43382862 43383137 -133591003 + L1MA3 LINE L1 3347 3635 -3930 40811 51 2 2 chrX 43383137 43389287 -133584853 + L1PA3 LINE L1 1 6152 -3 11612 200 21 13 chrX 43389303 43393329 -133580811 + L1MA3 LINE L1 3619 7674 -50 34306 103 9 9 chrX 43393343 43399493 -133574647 + L1PA6 LINE L1 2 6147 -7 40 49 0 0 chrX 43399595 43399656 -133574484 + AT_rich Low_complexity Low_complexity 1 61 0 4511 195 42 21 chrX 43399656 43401030 -133573110 + L1MA10 LINE L1 4908 6319 -15 200 98 0 24 chrX 43401507 43401548 -133572592 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 6742 161 11 6 chrX 43401548 43403967 -133570173 - L1MA1 LINE L1 -5 7716 5286 6670 216 26 9 chrX 43404685 43405121 -133569019 - L1MA1 LINE L1 -2259 5306 4879 2463 107 28 6 chrX 43405121 43405477 -133568663 - THE1B LTR MaLR 0 364 1 10390 115 17 35 chrX 43405479 43407085 -133567055 - THE1B-int LTR MaLR -2 1578 1 2287 140 22 0 chrX 43407085 43407441 -133566699 - THE1B LTR MaLR 0 364 1 6670 216 26 9 chrX 43407441 43408733 -133565407 - L1MA1 LINE L1 -2685 4880 3544 911 152 66 0 chrX 43408736 43408887 -133565253 + AluSg/x SINE Alu 134 294 -18 12246 165 27 49 chrX 43408897 43412145 -133561995 - L1MA1 LINE L1 -4013 3552 15 240 256 67 56 chrX 43412401 43412491 -133561649 + MIR SINE MIR 5 95 -167 2353 106 6 3 chrX 43412521 43412879 -133561261 - AluSq SINE Alu 0 359 1 2119 198 86 42 chrX 43412955 43413596 -133560544 - LTR1B LTR ERV1 -157 669 1 900 198 4 79 chrX 43413655 43413908 -133560232 + MLT1B LTR MaLR 1 234 -156 507 146 22 0 chrX 43413909 43413998 -133560142 + MLT1B LTR MaLR 377 467 0 501 299 111 0 chrX 43414000 43414144 -133559996 - MIR SINE MIR -101 161 2 2375 112 0 0 chrX 43414797 43415141 -133558999 + AluSx SINE Alu 1 344 0 1381 329 48 28 chrX 43415141 43415627 -133558513 + L2 LINE L2 2275 2783 -489 1078 229 122 4 chrX 43415627 43415770 -133558370 - AluJo SINE Alu -9 293 168 396 0 0 0 chrX 43415770 43415814 -133558326 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1078 229 122 4 chrX 43415814 43415932 -133558208 - AluJo SINE Alu -134 168 1 1381 329 48 28 chrX 43415932 43416215 -133557925 + L2 LINE L2 2783 3059 -213 240 35 0 0 chrX 43416655 43416684 -133557456 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2159 107 0 21 chrX 43416686 43416975 -133557165 - AluSc SINE Alu -26 283 1 23 33 0 0 chrX 43418320 43418350 -133555790 + AT_rich Low_complexity Low_complexity 1 30 0 1274 112 11 0 chrX 43418946 43419124 -133555016 + AluSg/x SINE Alu 121 300 -12 222 144 10 196 chrX 43419193 43419290 -133554850 + MIR SINE MIR 133 211 -51 1026 178 0 0 chrX 43419515 43419684 -133554456 + MER5A DNA MER1_type 18 186 -3 2306 99 3 10 chrX 43419730 43420044 -133554096 - AluSx SINE Alu 0 312 1 7468 115 97 85 chrX 43420696 43422373 -133551767 - pTR5 LTR ERV1 0 2438 743 763 201 116 0 chrX 43422430 43422594 -133551546 + MIR SINE MIR 80 262 0 263 272 97 78 chrX 43422799 43423005 -133551135 - L2 LINE L2 -8 3305 3096 822 143 0 8 chrX 43423193 43423326 -133550814 - FLAM_C SINE Alu 0 133 2 237 268 24 49 chrX 43423400 43423482 -133550658 - L2 LINE L2 -649 2665 2586 324 274 62 0 chrX 43423590 43423703 -133550437 - L1ME4a LINE L1 -2 6119 6000 470 242 28 60 chrX 43423866 43423997 -133550143 - L1ME4a LINE L1 -193 5928 5807 1473 176 12 112 chrX 43423997 43424400 -133549740 - MLT1A1 LTR MaLR -2 363 1 470 242 28 60 chrX 43424400 43424516 -133549624 - L1ME4a LINE L1 -314 5807 5689 364 315 142 5 chrX 43424668 43424865 -133549275 + L3 LINE CR1 1148 1371 -206 * 1049 198 26 30 chrX 43424863 43425095 -133549045 - MIR SINE MIR 0 262 32 295 287 53 127 chrX 43425095 43425339 -133548801 - L2 LINE L2 -2 3270 3045 272 229 43 0 chrX 43425348 43425418 -133548722 + MER117 DNA MER1_type 88 160 -37 724 216 49 5 chrX 43425526 43425730 -133548410 + MER113 DNA MER1_type? 5 217 -304 187 286 0 0 chrX 43425786 43425835 -133548305 + L3 LINE CR1 1524 1572 -5 2187 99 24 0 chrX 43426607 43426899 -133547241 - AluSg SINE Alu -11 299 1 396 0 0 0 chrX 43427131 43427175 -133546965 + (CA)n Simple_repeat Simple_repeat 2 45 0 396 318 71 34 chrX 43427507 43427580 -133546560 - MIR SINE MIR 0 262 193 467 188 236 35 chrX 43427580 43427724 -133546416 - MER69A DNA AcHobo -4 173 1 396 318 71 34 chrX 43427724 43427889 -133546251 - MIR SINE MIR -69 193 15 230 222 0 0 chrX 43428448 43428493 -133545647 + GA-rich Low_complexity Low_complexity 3 47 0 256 296 49 0 chrX 43429057 43429138 -133545002 + L2 LINE L2 3188 3272 0 671 208 58 0 chrX 43429853 43430007 -133544133 + MIR SINE MIR 100 262 0 186 311 90 112 chrX 43430063 43430330 -133543810 - L2 LINE L2 -102 3170 2910 196 297 173 32 chrX 43430424 43430609 -133543531 - L2 LINE L2 -849 2465 2255 * 384 264 0 88 chrX 43430607 43430766 -133543374 + MIR SINE MIR 118 262 0 200 242 30 15 chrX 43430768 43430834 -133543306 + CT-rich Low_complexity Low_complexity 4 70 0 221 297 14 0 chrX 43431554 43431628 -133542512 + CT-rich Low_complexity Low_complexity 2 76 0 200 316 214 0 chrX 43433539 43433656 -133540484 + MIR SINE MIR 48 189 -73 2352 87 7 0 chrX 43434673 43434971 -133539169 - AluSp SINE Alu -13 300 1 22 35 0 0 chrX 43435147 43435176 -133538964 + AT_rich Low_complexity Low_complexity 1 29 0 580 196 52 26 chrX 43435497 43435650 -133538490 + MIR SINE MIR 60 216 -46 297 51 0 0 chrX 43436098 43436137 -133538003 + (TG)n Simple_repeat Simple_repeat 1 39 0 198 0 0 0 chrX 43436219 43436241 -133537899 + (TA)n Simple_repeat Simple_repeat 2 23 0 279 211 126 0 chrX 43436249 43436344 -133537796 - Charlie8 DNA MER1_type -2261 156 50 463 142 55 102 chrX 43436367 43436494 -133537646 + MLT1B LTR MaLR 5 125 -265 21 57 0 0 chrX 43436494 43436529 -133537611 + AT_rich Low_complexity Low_complexity 1 35 0 279 270 27 9 chrX 43436538 43436649 -133537491 - MIR SINE MIR -1 261 149 282 29 0 0 chrX 43436656 43436691 -133537449 + (TG)n Simple_repeat Simple_repeat 2 36 0 484 270 30 44 chrX 43436696 43436957 -133537183 - L1MC4a LINE L1 -297 5824 5688 1253 219 42 70 chrX 43436962 43437363 -133536777 - MLT1B LTR MaLR 0 390 1 463 233 106 87 chrX 43437382 43437453 -133536687 + MER102b DNA MER1_type 61 129 -1299 2136 116 14 0 chrX 43437453 43437747 -133536393 + AluSq SINE Alu 1 298 -15 463 233 106 87 chrX 43437747 43437950 -133536190 + MER102b DNA MER1_type 129 340 -1 289 316 0 0 chrX 43438085 43438164 -133535976 - L2 LINE L2 -2 3270 3192 496 256 53 53 chrX 43438516 43438743 -133535397 - Charlie8 DNA MER1_type -2180 237 11 601 287 29 29 chrX 43439992 43440166 -133533974 + MIR SINE MIR 20 193 -69 477 107 27 0 chrX 43440189 43440264 -133533876 + L1PA10 LINE L1 6091 6167 -1 320 231 109 32 chrX 43440268 43440424 -133533716 + L1MC5 LINE L1 7741 7908 -53 1972 152 7 3 chrX 43440433 43440723 -133533417 - AluSx SINE Alu -21 291 1 227 366 0 50 chrX 43440897 43440998 -133533142 - MIR SINE MIR -81 127 32 300 315 89 4 chrX 43441163 43441309 -133532831 - MIR SINE MIR -55 207 39 402 208 48 64 chrX 43441722 43441847 -133532293 - MIR SINE MIR -56 206 84 2211 108 10 7 chrX 43442785 43443090 -133531050 - AluSg SINE Alu -4 306 1 661 174 19 193 chrX 43443347 43443469 -133530671 + MIR SINE MIR 39 90 -172 1594 160 91 0 chrX 43443469 43443744 -133530396 - AluJo SINE Alu -12 300 1 661 174 19 193 chrX 43443744 43443891 -133530249 + MIR SINE MIR 90 261 -1 30 0 0 0 chrX 43445203 43445233 -133528907 + AT_rich Low_complexity Low_complexity 1 30 0 758 281 28 14 chrX 43445671 43445888 -133528252 - MIR SINE MIR -29 233 14 255 283 66 71 chrX 43445912 43446124 -133528016 - L2 LINE L2 -729 2585 2375 214 217 100 17 chrX 43446220 43446280 -133527860 - MIR SINE MIR -1 261 197 4324 128 88 7 chrX 43446280 43447364 -133526776 - Tigger3(Golem) DNA MER2_type 0 3029 2033 1681 57 0 0 chrX 43447364 43447576 -133526564 + L1PA5 LINE L1 5941 6152 -2 4324 128 88 7 chrX 43447576 43447633 -133526507 - Tigger3(Golem) DNA MER2_type -996 2033 1 283 311 34 25 chrX 43447633 43447752 -133526388 - MIR SINE MIR -64 198 79 490 220 0 28 chrX 43448212 43448321 -133525819 - L2 LINE L2 -23 3290 3185 2120 151 72 3 chrX 43448382 43448759 -133525381 - MER57A LTR ERV1 0 403 1 244 314 0 12 chrX 43449863 43449910 -133524230 - MIR SINE MIR -57 205 158 1819 159 25 91 chrX 43449910 43449996 -133524144 - MLT2D LTR ERVL 0 414 324 180 0 0 0 chrX 43449996 43450016 -133524124 + (GA)n Simple_repeat Simple_repeat 1 20 0 1819 159 25 91 chrX 43450016 43450370 -133523770 - MLT2D LTR ERVL -90 324 3 244 314 0 12 chrX 43450370 43450408 -133523732 - MIR SINE MIR -104 158 121 2234 106 0 10 chrX 43450681 43451017 -133523123 - AluSg SINE Alu 0 310 1 6969 121 11 10 chrX 43451021 43451273 -133522867 - L1MA2 LINE L1 0 6304 6054 2144 115 0 7 chrX 43451273 43451569 -133522571 - AluSx SINE Alu -16 296 3 6969 121 11 10 chrX 43451569 43453007 -133521133 - L1MA2 LINE L1 -250 6054 4611 1647 166 0 25 chrX 43453007 43453290 -133520850 - AluSx SINE Alu -2 310 35 308 156 0 0 chrX 43453325 43453370 -133520770 - AluSx SINE Alu -252 47 3 311 154 0 0 chrX 43453372 43453437 -133520703 - L1MA2 LINE L1 -1527 4619 4555 1662 210 115 73 chrX 43453514 43454267 -133519873 - LTR1B LTR ERV1 -37 983 1 8000 169 28 69 chrX 43454267 43455962 -133518178 - L1MA2 LINE L1 -1585 4561 2963 2184 118 3 0 chrX 43455962 43456258 -133517882 - AluSp SINE Alu -15 298 2 8000 169 28 69 chrX 43456258 43456617 -133517523 - L1MA2 LINE L1 -3183 2963 2591 3696 127 14 0 chrX 43456622 43457187 -133516953 - L1PA16 LINE L1 -10 6156 5584 2184 87 0 11 chrX 43457525 43457831 -133516309 - AluY SINE Alu 0 303 1 245 232 49 0 chrX 43458487 43458569 -133515571 - L1MC4 LINE L1 -164 7878 7793 321 149 68 0 chrX 43458962 43459036 -133515104 + MER113 DNA MER1_type? 4 82 -439 189 0 0 0 chrX 43459052 43459073 -133515067 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1297 202 90 43 chrX 43459124 43459569 -133514571 - MLT1C LTR MaLR -1 466 1 21 0 0 0 chrX 43459613 43459634 -133514506 + AT_rich Low_complexity Low_complexity 1 21 0 202 250 0 0 chrX 43459753 43459797 -133514343 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chrX 43461012 43461035 -133513105 + AT_rich Low_complexity Low_complexity 1 23 0 262 152 0 0 chrX 43461910 43461980 -133512160 - AluSx SINE Alu 0 311 242 1538 111 0 0 chrX 43461981 43462179 -133511961 - AluSx SINE Alu -114 198 1 476 145 0 0 chrX 43462755 43462824 -133511316 - AluJ/FRAM SINE Alu -25 287 219 247 167 22 44 chrX 43462922 43463012 -133511128 - L1MC5 LINE L1 -261 7700 7613 46 120 0 0 chrX 43463477 43463768 -133510372 + AT_rich Low_complexity Low_complexity 1 291 0 330 339 16 8 chrX 43463885 43464006 -133510134 + L2 LINE L2 2960 3081 -191 23 68 0 0 chrX 43465257 43465301 -133508839 + AT_rich Low_complexity Low_complexity 1 44 0 187 282 81 96 chrX 43465564 43465773 -133508367 + L2 LINE L2 3107 3312 -1 23 0 0 0 chrX 43465817 43465840 -133508300 + AT_rich Low_complexity Low_complexity 1 23 0 210 296 0 0 chrX 43466003 43466057 -133508083 + L3 LINE CR1 1323 1376 -201 205 152 0 43 chrX 43466258 43466304 -133507836 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2733 71 14 0 chrX 43466484 43466834 -133507306 - THE1A LTR MaLR 0 355 1 229 244 47 58 chrX 43466834 43466920 -133507220 + Charlie7 DNA MER1_type 6 90 -2522 4332 159 15 18 chrX 43466933 43467775 -133506365 - L1MA8 LINE L1 -10 6281 5442 198 0 0 0 chrX 43468262 43468284 -133505856 + (CA)n Simple_repeat Simple_repeat 2 23 0 240 35 0 0 chrX 43468776 43468805 -133505335 + (TG)n Simple_repeat Simple_repeat 2 30 0 306 0 0 0 chrX 43469604 43469638 -133504502 + (CA)n Simple_repeat Simple_repeat 2 35 0 390 100 0 0 chrX 43469638 43469698 -133504442 + (GA)n Simple_repeat Simple_repeat 1 60 0 452 298 136 37 chrX 43470080 43470174 -133503966 - MER102b DNA MER1_type -1129 299 216 1306 171 78 84 chrX 43470174 43470519 -133503621 - MER2 DNA MER2_type -1 343 1 452 298 136 37 chrX 43470519 43470696 -133503444 - MER102b DNA MER1_type -1212 216 1 368 298 29 0 chrX 43470990 43471094 -133503046 + MIR3 SINE MIR 60 166 -42 2014 133 7 7 chrX 43471474 43471767 -133502373 - AluSx SINE Alu -19 293 1 549 234 22 122 chrX 43471985 43472207 -133501933 + L2 LINE L2 2651 2850 -464 185 382 40 0 chrX 43472205 43472281 -133501859 + L2 LINE L2 3005 3083 -230 * 23 33 0 0 chrX 43472337 43472367 -133501773 + AT_rich Low_complexity Low_complexity 1 30 0 2839 113 14 33 chrX 43472439 43472927 -133501213 - L1MA2 LINE L1 -7 6297 5819 3339 140 34 4 chrX 43473137 43474039 -133500101 - L1MA2 LINE L1 -506 5799 4875 1462 170 91 9 chrX 43674043 43674384 -133299756 + LTR49-int LTR ERV1 4044 4412 -1919 4509 89 8 0 chrX 43674384 43675010 -133299130 - L1PA8 LINE L1 -1 6486 5856 11631 129 8 9 chrX 43675010 43677010 -133297130 - L1PA8 LINE L1 -1080 5381 3385 * 40016 42 22 2 chrX 43677000 43677011 -133297129 - L1PA2 LINE L1 -1 6154 6145 2658 56 6 0 chrX 43677011 43677348 -133296792 - L1PA4 LINE L1 -3 6152 5814 40016 42 22 2 chrX 43677348 43683369 -133290771 - L1PA2 LINE L1 -10 6145 1 39709 60 4 1 chrX 43683377 43689188 -133284952 - L1PA4 LINE L1 -326 5829 1 10958 147 23 49 chrX 43689189 43692145 -133281995 - L1PA8 LINE L1 -3063 3398 427 486 218 0 20 chrX 43692133 43692234 -133281906 - L1PA8 LINE L1 -6357 104 6 * 264 91 23 0 chrX 43692249 43692293 -133281847 - MLT1D LTR MaLR -185 320 276 2456 160 29 12 chrX 43692332 43692819 -133281321 + LTR49-int LTR ERV1 4402 4896 -1435 39 50 0 0 chrX 43692864 43692924 -133281216 + AT_rich Low_complexity Low_complexity 1 60 0 20151 141 10 16 chrX 43692924 43697406 -133276734 - L1PA8A LINE L1 -13 6118 1673 1808 186 14 3 chrX 43697407 43697751 -133276389 - LTR49-int LTR ERV1 -931 5400 5053 741 67 38 0 chrX 43697776 43697881 -133276259 + L1PA4 LINE L1 8 116 -6030 * 32492 43 3 2 chrX 43697865 43702970 -133271170 + L1PA4 LINE L1 1094 6202 0 677 58 0 82 chrX 43703605 43703852 -133270288 + (TA)n Simple_repeat Simple_repeat 1 226 0 802 270 85 23 chrX 43703863 43704497 -133269643 + L1ME3 LINE L1 4468 5186 -960 9710 192 25 43 chrX 43704534 43707886 -133266254 + L1P3 LINE L1 10 3303 -3158 4950 116 7 3 chrX 43707886 43708618 -133265522 + L1PA10 LINE L1 5421 6158 -10 661 190 116 39 chrX 43708632 43708932 -133265208 + L1ME3 LINE L1 5220 5535 -629 356 233 114 86 chrX 43708933 43709143 -133264997 + L1ME3 LINE L1 5611 5826 -336 21 71 0 0 chrX 43710965 43711007 -133263133 + AT_rich Low_complexity Low_complexity 1 42 0 222 313 15 0 chrX 43711767 43711834 -133262306 + MIR3 SINE MIR 125 192 -16 240 206 16 0 chrX 43712993 43713056 -133261084 - Charlie5 DNA MER1_type -29 2583 2520 840 173 19 31 chrX 43713079 43713241 -133260899 - FRAM SINE Alu -6 160 1 736 159 75 53 chrX 43713245 43713472 -133260668 - Charlie5 DNA MER1_type -29 2583 2352 * 1000 148 82 1 chrX 43713470 43713666 -133260474 - Charlie5 DNA MER1_type -2507 105 1 22 0 0 0 chrX 43713762 43713784 -133260356 + AT_rich Low_complexity Low_complexity 1 22 0 224 194 0 0 chrX 43714011 43714047 -133260093 + polypyrimidine Low_complexity Low_complexity 1 36 0 436 308 28 28 chrX 43714176 43714390 -133259750 + L2 LINE L2 2564 2777 -537 23 54 0 0 chrX 43715274 43715311 -133258829 + AT_rich Low_complexity Low_complexity 1 37 0 215 317 98 32 chrX 43716888 43717011 -133257129 - MIR SINE MIR -109 153 23 1311 254 87 29 chrX 43717229 43717887 -133256253 + L1MC5 LINE L1 7187 7882 -79 698 280 11 32 chrX 43718009 43718195 -133255945 - MIR3 SINE MIR -10 198 17 402 261 84 124 chrX 43719921 43720301 -133253839 - L1M2 LINE L1 -5712 1137 773 222 37 0 0 chrX 43720438 43720465 -133253675 + (CCG)n Simple_repeat Simple_repeat 3 29 0 22 0 0 0 chrX 43720531 43720553 -133253587 + GC_rich Low_complexity Low_complexity 1 22 0 326 289 95 72 chrX 43720834 43721097 -133253043 + L1M4 LINE L1 4724 4992 -1154 189 0 0 0 chrX 43721154 43721175 -133252965 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 1055 279 78 66 chrX 43722113 43723322 -133250818 - L1ME3A LINE L1 -31 6139 4889 231 36 0 0 chrX 43723322 43723350 -133250790 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1055 279 78 66 chrX 43723350 43723790 -133250350 - L1ME3A LINE L1 -1281 4889 4456 843 261 32 43 chrX 43723861 43724206 -133249934 - L1ME3A LINE L1 -1796 4350 4010 272 292 120 26 chrX 43724218 43724451 -133249689 - LTR41 LTR ERVL -9 764 510 369 0 0 0 chrX 43724708 43724749 -133249391 + (TG)n Simple_repeat Simple_repeat 1 41 0 539 220 11 94 chrX 43724936 43725127 -133249013 - LTR41 LTR ERVL -595 178 4 298 98 0 196 chrX 43725258 43725350 -133248790 + L1PB4 LINE L1 6076 6149 -7 45 55 0 0 chrX 43728129 43728202 -133245938 + AT_rich Low_complexity Low_complexity 1 73 0 1365 214 119 38 chrX 43728234 43728679 -133245461 - L1ME1 LINE L1 -99 6067 5587 407 183 296 0 chrX 43728679 43728794 -133245346 + LTR52-int LTR ERVL 5327 5475 -55 1556 204 44 72 chrX 43728796 43729274 -133244866 + LTR55 LTR ERV 1 467 -81 1981 109 3 3 chrX 43729274 43729603 -133244537 + AluSx SINE Alu 1 329 0 1556 204 44 72 chrX 43729603 43729666 -133244474 + LTR55 LTR ERV 467 530 -18 354 282 64 61 chrX 43732785 43733113 -133241027 + LTR52-int LTR ERVL 2316 2630 -926 315 0 0 0 chrX 43735644 43735679 -133238461 + (CA)n Simple_repeat Simple_repeat 2 36 0 1349 112 19 0 chrX 43736146 43736361 -133237779 - L1PA16 LINE L1 -3 6163 5945 2267 96 0 20 chrX 43736563 43736865 -133237275 - AluSg SINE Alu -14 296 1 1477 215 14 56 chrX 43738366 43738850 -133235290 + LTR55 LTR ERV 68 531 -17 20715 103 8 2 chrX 43738883 43741266 -133232874 - L1P LINE L1 -1429 4717 2307 276 30 0 0 chrX 43741266 43741299 -133232841 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 20715 103 8 2 chrX 43741299 43742097 -133232043 - L1P LINE L1 -3839 2307 1516 6475 70 12 3 chrX 43742097 43743535 -133230605 + L1PA7 LINE L1 4703 6149 -5 426 114 0 0 chrX 43743735 43743814 -133230326 + (TA)n Simple_repeat Simple_repeat 1 79 0 7511 66 0 22 chrX 43743815 43745618 -133228522 - L1PA5 LINE L1 -5 6149 4369 11345 153 19 21 chrX 43745678 43747819 -133226321 - L1P LINE L1 -4001 2145 11 4241 225 11 8 chrX 43747826 43748207 -133225933 - L1 LINE L1 -2842 3304 2926 2000 113 10 21 chrX 43748207 43748498 -133225642 - AluSg SINE Alu -22 288 1 4241 225 11 8 chrX 43748498 43749244 -133224896 - L1 LINE L1 -3220 2926 2173 * 25896 53 2 3 chrX 43749232 43753474 -133220666 - L1PA4 LINE L1 -1 6154 1918 9646 77 2 0 chrX 43753474 43754807 -133219333 + L1P LINE L1 619 1954 -4192 2216 140 13 10 chrX 43754810 43755278 -133218862 - L1PBa LINE L1 -3953 2909 2383 389 266 8 0 chrX 43755263 43755391 -133218749 - L1P LINE L1 -1606 4540 4412 * 6249 260 25 14 chrX 43755465 43757681 -133216459 - L1P LINE L1 -1752 4394 2154 2105 139 75 48 chrX 43757694 43757879 -133216261 - L1MA2 LINE L1 0 7723 7544 1672 181 10 10 chrX 43757879 43758177 -133215963 + AluSx SINE Alu 1 298 -14 2105 139 75 48 chrX 43758177 43758508 -133215632 - L1MA2 LINE L1 -179 7544 7193 336 247 59 0 chrX 43758518 43758603 -133215537 - MER58A DNA MER1_type -17 90 1 182 94 38 38 chrX 43758616 43758669 -133215471 + T-rich Low_complexity Low_complexity 1 53 0 2149 120 30 14 chrX 43758669 43759036 -133215104 - L1PB2 LINE L1 -3 6148 5776 236 137 20 0 chrX 43759050 43759101 -133215039 + (TA)n Simple_repeat Simple_repeat 1 52 0 631 169 8 0 chrX 43759102 43759220 -133214920 - L1PB2 LINE L1 -363 5788 5670 1133 210 20 8 chrX 43759220 43759481 -133214659 - LTR10B LTR ERV1 0 593 312 1599 208 100 17 chrX 43759509 43759989 -133214151 - LTR10B-int LTR ERV1 -6121 528 9 1147 208 23 8 chrX 43759992 43760251 -133213889 - LTR10B LTR ERV1 -2 545 312 11868 199 19 13 chrX 43760380 43761501 -133212639 - L1P5 LINE L1 -479 6388 5275 1971 126 18 3 chrX 43761501 43761786 -133212354 - AluSc SINE Alu -20 289 1 11868 199 19 13 chrX 43761786 43764437 -133209703 - L1P5 LINE L1 -1592 5275 2519 10343 193 25 26 chrX 43764440 43766315 -133207825 - L1MA2 LINE L1 -527 7196 5321 3559 161 8 21 chrX 43766315 43766935 -133207205 - LTR9 LTR ERV1 0 612 1 10343 193 25 26 chrX 43766935 43766961 -133207179 - L1MA2 LINE L1 -2402 5321 5296 2213 123 0 0 chrX 43766961 43767271 -133206869 + AluY SINE Alu 1 310 -1 10343 193 25 26 chrX 43767271 43767283 -133206857 - L1MA2 LINE L1 -2427 5296 5285 3348 35 0 0 chrX 43767283 43767686 -133206454 + L1PA4 LINE L1 5750 6152 -3 10343 193 25 26 chrX 43767686 43770597 -133203543 - L1MA2 LINE L1 -2438 5285 2373 629 248 79 53 chrX 43871854 43872120 -133102020 - L1MC4a LINE L1 -1674 6134 5862 426 257 122 57 chrX 43872549 43872794 -133101346 - MLT1K LTR MaLR -19 569 309 248 326 53 38 chrX 43872836 43872933 -133101207 - MLT1K LTR MaLR -355 233 132 3734 108 6 24 chrX 43872933 43873470 -133100670 - MER1A DNA MER1_type 0 527 1 248 326 53 38 chrX 43873470 43873504 -133100636 - MLT1K LTR MaLR -456 132 100 841 232 44 0 chrX 43874147 43874328 -133099812 - MER5A DNA MER1_type 0 189 1 313 290 75 31 chrX 43874374 43874531 -133099609 + MER5A DNA MER1_type 15 178 0 251 339 153 0 chrX 43874854 43875043 -133099097 + MIR SINE MIR 34 251 -11 497 277 71 68 chrX 43875350 43875660 -133098480 - L2 LINE L2 -70 3243 2933 1756 126 29 0 chrX 43875812 43876117 -133098023 - AluSp SINE Alu 0 313 1 2076 203 74 28 chrX 43879582 43880350 -133093790 - L1M4 LINE L1 -705 5473 4673 1378 104 0 0 chrX 43880357 43880539 -133093601 - AluSg/x SINE Alu 0 312 131 761 147 88 163 chrX 43880545 43880865 -133093275 - L1M4 LINE L1 -1478 4668 4373 1207 178 44 4 chrX 43880867 43881163 -133092977 + MER21B LTR ERV1 1 339 -524 6895 18 0 2 chrX 43881164 43882373 -133091767 + L1PA3 LINE L1 4836 6042 -113 519 172 57 51 chrX 43882474 43882631 -133091509 - L1M4 LINE L1 -2149 3997 3840 4053 207 66 13 chrX 43882638 43884058 -133090082 - L1MB4 LINE L1 0 6416 4909 198 0 0 0 chrX 43884058 43884080 -133090060 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 4053 207 66 13 chrX 43884080 43884210 -133089930 - L1MB4 LINE L1 -1507 4909 4787 1031 218 23 5 chrX 43884205 43884425 -133089715 - L1MB4 LINE L1 -4635 1749 1526 * 2165 239 46 75 chrX 43884445 43885289 -133088851 + L1M3e LINE L1 7 2086 -4944 409 162 22 59 chrX 43885570 43885754 -133088386 - L1MA4 LINE L1 -279 6021 5771 4702 173 38 31 chrX 43885771 43887565 -133086575 - L1PB4 LINE L1 -9 6147 4316 3208 234 25 29 chrX 43887569 43888578 -133085562 - L1PB4 LINE L1 -2542 3604 2600 2221 192 31 6 chrX 43888598 43889088 -133085052 - L1M1 LINE L1 -536 5764 5263 2379 144 8 0 chrX 43889090 43889478 -133084662 - L1PA15 LINE L1 -2 6163 5773 3258 119 9 13 chrX 43889494 43890032 -133084108 - L1MA2 LINE L1 0 7723 7188 921 28 0 0 chrX 43890053 43890162 -133083978 - L1PA3 LINE L1 -3 6152 6044 5030 167 23 10 chrX 43890162 43891389 -133082751 - L1MA2 LINE L1 -540 7184 5974 840 48 0 0 chrX 43891389 43891494 -133082646 + (TA)n Simple_repeat Simple_repeat 1 105 0 261 0 0 0 chrX 43891493 43891522 -133082618 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 5030 167 23 10 chrX 43891494 43891523 -133082617 - L1MA2 LINE L1 -1750 5974 5947 2080 116 0 0 chrX 43891523 43891800 -133082340 - AluSx SINE Alu -35 277 1 5030 167 23 10 chrX 43891800 43892036 -133082104 - L1MA2 LINE L1 -1777 5947 5698 * 5425 118 26 33 chrX 43892033 43892947 -133081193 - L1MA2 LINE L1 -4134 3431 2523 2060 130 7 0 chrX 43892947 43893246 -133080894 - AluSx SINE Alu -11 301 1 5425 118 26 33 chrX 43893246 43893322 -133080818 - L1MA2 LINE L1 -5042 2523 2448 2787 51 3 0 chrX 43893326 43893676 -133080464 - L1PA5 LINE L1 -1 6153 5803 21564 50 50 1 chrX 43893690 43896641 -133077499 - L1PA5 LINE L1 -683 5472 2368 230 218 18 0 chrX 43896645 43896700 -133077440 + MLT1C LTR MaLR 410 465 -2 453 182 31 10 chrX 43896767 43896882 -133077258 - L1M LINE L1 -766 5403 5282 1082 185 15 0 chrX 43896979 43897184 -133076956 - L1PB3 LINE L1 0 6154 5947 415 233 0 0 chrX 43897236 43897322 -133076818 - AluJ/FRAM SINE Alu 0 302 217 3703 163 68 29 chrX 43897348 43898646 -133075494 - L1MA4A LINE L1 -206 6097 4740 315 233 6 12 chrX 43898690 43898853 -133075287 + (TA)n Simple_repeat Simple_repeat 1 162 0 308 267 11 11 chrX 43898865 43898955 -133075185 + L1MC4 LINE L1 6614 6703 -1339 366 267 0 0 chrX 43898964 43899054 -133075086 + L1MC4 LINE L1 6614 6703 -1339 360 289 0 0 chrX 43898986 43899076 -133075064 - L1MC4 LINE L1 -1339 6703 6614 * 519 237 0 0 chrX 43899089 43899515 -133074625 + (TA)n Simple_repeat Simple_repeat 1 426 0 3984 111 3 0 chrX 43899536 43900106 -133074034 - L1PA12 LINE L1 -25 6143 5572 5665 255 88 25 chrX 43900108 43903497 -133070643 - L1PA15-16 LINE L1 -1398 5451 1809 3021 191 12 11 chrX 43903503 43904142 -133069998 - L1P LINE L1 -993 5153 4514 * 20587 172 25 83 chrX 43904140 43905950 -133068190 - L1PA11 LINE L1 -25 6149 4235 13664 63 3 1 chrX 43905950 43908443 -133065697 - L1PA6 LINE L1 -7 6147 3597 20587 172 25 83 chrX 43908443 43909507 -133064633 - L1PA11 LINE L1 -1939 4235 3111 2062 137 0 28 chrX 43909507 43909829 -133064311 - AluSq SINE Alu 0 313 1 20587 172 25 83 chrX 43909829 43913491 -133060649 - L1PA11 LINE L1 -3063 3111 4 1883 259 55 6 chrX 43913486 43914162 -133059978 - L1M2b LINE L1 -3314 3894 3186 * 11113 124 26 21 chrX 43914184 43920492 -133053648 - L1PA7 LINE L1 -8 6461 1 1849 279 42 34 chrX 43920552 43921923 -133052217 - L1PA15-16 LINE L1 -4068 2135 776 396 0 0 0 chrX 43921923 43921967 -133052173 + (TA)n Simple_repeat Simple_repeat 2 45 0 2150 130 3 0 chrX 43921971 43922271 -133051869 - AluSx SINE Alu 0 312 12 1849 279 42 34 chrX 43922271 43922596 -133051544 - L1PA15-16 LINE L1 -5429 774 401 330 374 44 18 chrX 43922712 43923052 -133051088 - L1PA15-16 LINE L1 -5799 405 57 283 345 22 22 chrX 43923104 43923323 -133050817 - L1M2b LINE L1 -5254 1955 439 1811 169 63 31 chrX 43923692 43924230 -133049910 - MLT2A2 LTR ERVL 0 554 1 15651 123 36 16 chrX 43924230 43926771 -133047369 - HERVL-A2 LTR ERVL 0 5654 3064 9848 117 7 2 chrX 43926770 43928228 -133045912 - HERVL-A2 LTR ERVL -3128 2526 1062 * 311 155 0 0 chrX 43928228 43928286 -133045854 + L1PA7 LINE L1 1582 1639 -4507 * 15829 110 11 2 chrX 43928285 43930949 -133043191 + L1PA7 LINE L1 2792 5475 -697 23431 68 3 2 chrX 43930950 43934157 -133039983 + L1P LINE L1 1 3208 -2938 195 42 0 0 chrX 43934158 43934182 -133039958 + (T)n Simple_repeat Simple_repeat 1 24 0 2367 89 3 0 chrX 43934185 43934510 -133039630 - L1PA3 LINE L1 -3 6467 6142 2881 104 7 0 chrX 43934612 43935034 -133039106 + L1PA7 LINE L1 5717 6141 -13 21798 130 103 15 chrX 43935055 43938620 -133035520 - L1PA3 LINE L1 -697 5790 2540 378 0 0 0 chrX 43938620 43938662 -133035478 + (TG)n Simple_repeat Simple_repeat 2 43 0 2138 109 0 17 chrX 43938662 43938955 -133035185 - AluY SINE Alu -23 288 1 21798 130 103 15 chrX 43938955 43939876 -133034264 - L1PA3 LINE L1 -3947 2540 1701 1904 155 6 28 chrX 43939876 43940193 -133033947 + AluSp SINE Alu 1 310 -3 21798 130 103 15 chrX 43940193 43941011 -133033129 - L1PA3 LINE L1 -4786 1701 4 2150 109 14 0 chrX 43941561 43941854 -133032286 - AluSx SINE Alu -13 299 3 678 263 23 55 chrX 43942552 43942769 -133031371 + MER63A DNA MER1_type 1 210 0 847 117 73 0 chrX 43943951 43944130 -133030010 + L1MA7 LINE L1 6100 6291 0 2179 281 87 22 chrX 43944147 43944927 -133029213 - HERVL40 LTR ERVL -2978 2552 1722 1227 276 66 8 chrX 43944957 43945338 -133028802 - HERVL40 LTR ERVL -3876 1654 1252 407 309 72 11 chrX 43945367 43945548 -133028592 - HERVL40 LTR ERVL -5319 211 20 1209 228 62 16 chrX 43945568 43946081 -133028059 - LTR40a LTR ERVL -4 515 44 3325 173 10 15 chrX 43946109 43946711 -133027429 + MER7C DNA MER2_type 4 602 0 336 321 52 38 chrX 43946932 43947144 -133026996 - L2 LINE L2 -2 3311 3097 326 317 128 50 chrX 43947209 43947686 -133026454 - L1M4 LINE L1 -813 5333 4820 1086 292 18 30 chrX 43947710 43948288 -133025852 + L2 LINE L2 2633 3198 -115 448 249 17 70 chrX 43948372 43948613 -133025527 - MER102b DNA MER1_type -5 336 109 302 222 150 72 chrX 43952589 43952742 -133021398 - HAL1 LINE L1 -2335 172 8 24 32 0 0 chrX 43953783 43953814 -133020326 + AT_rich Low_complexity Low_complexity 1 31 0 2469 274 128 38 chrX 43954106 43955134 -133019006 + L2 LINE L2 1740 2860 -454 312 167 13 51 chrX 43955140 43955218 -133018922 - MER116 DNA Mariner -5 75 1 319 321 20 4 chrX 43955220 43955343 -133018797 + L2 LINE L2 2861 2983 -289 476 291 19 75 chrX 43955435 43955703 -133018437 - MLT1J2 LTR MaLR 0 450 198 1130 214 19 12 chrX 43955735 43956057 -133018083 - MER33 DNA MER1_type 0 324 1 258 345 7 22 chrX 43956066 43956205 -133017935 - MLT1J1 LTR MaLR -272 174 38 487 239 17 34 chrX 43956290 43956466 -133017674 - L1MD3 LINE L1 -915 7080 6908 2281 113 0 0 chrX 43956466 43956766 -133017374 - AluSg SINE Alu -10 300 1 3066 217 99 39 chrX 43956784 43957504 -133016636 - L1MD3 LINE L1 -743 5403 4728 2120 135 0 0 chrX 43957504 43957801 -133016339 - AluSc SINE Alu -12 297 1 3066 217 99 39 chrX 43957801 43958106 -133016034 - L1MD3 LINE L1 -1418 4728 5432 2253 110 3 0 chrX 43958106 43958405 -133015735 - AluSp SINE Alu 0 313 14 3066 217 99 39 chrX 43958405 43958720 -133015420 - L1MD3 LINE L1 -713 5433 5138 5110 131 19 48 chrX 43958755 43960046 -133014094 - L1PB2 LINE L1 0 6151 4885 436 105 11 11 chrX 43960049 43960144 -133013996 + (TA)n Simple_repeat Simple_repeat 2 96 0 1176 32 0 0 chrX 43960145 43960299 -133013841 - L1PA5 LINE L1 -831 5315 5162 6948 47 1 0 chrX 43960299 43961138 -133013002 + L1PA5 LINE L1 5304 6147 -7 4630 205 20 25 chrX 43961364 43962970 -133011170 + L1PA15 LINE L1 3912 5501 -664 1690 213 0 0 chrX 43962970 43963280 -133010860 + AluJb SINE Alu 1 310 -2 4630 205 20 25 chrX 43963280 43963929 -133010211 + L1PA15 LINE L1 5501 6152 -13 14310 209 57 11 chrX 43963948 43969168 -133004972 + L1PA13 LINE L1 1 5468 -1329 209 164 36 0 chrX 43969180 43969235 -133004905 + (TA)n Simple_repeat Simple_repeat 1 57 0 23556 79 8 2 chrX 43969271 43972611 -133001529 - L1P LINE L1 -2559 3587 227 450 133 13 0 chrX 43972714 43972789 -133001351 - AluS SINE Alu -234 76 1 198 275 0 0 chrX 43973038 43973078 -133001062 - L2 LINE L2 -10 3303 3264 339 238 78 0 chrX 43973110 43973223 -133000917 - MIR SINE MIR -61 147 32 1440 284 42 35 chrX 43973405 43973959 -133000181 - L2 LINE L2 0 3313 2749 1045 289 50 3 chrX 43973959 43974302 -132999838 - LTR16A LTR ERVL 0 450 92 2427 234 79 20 chrX 43974358 43975055 -132999085 - L2 LINE L2 -561 2753 2016 618 204 8 23 chrX 43975546 43975678 -132998462 + FLAM_A SINE Alu 4 133 0 305 373 49 20 chrX 43976578 43976782 -132997358 + L2 LINE L2 2767 2976 -338 311 309 50 7 chrX 43977240 43977379 -132996761 - MIR3 SINE MIR -59 149 5 201 284 11 84 chrX 43977630 43977725 -132996415 + MIR SINE MIR 28 115 -93 2223 105 10 10 chrX 43978249 43978555 -132995585 - AluSx SINE Alu -1 311 6 22 88 0 0 chrX 43978657 43978714 -132995426 + AT_rich Low_complexity Low_complexity 1 57 0 362 306 70 16 chrX 43978837 43979023 -132995117 - MIR3 SINE MIR -5 203 8 207 0 0 0 chrX 43979373 43979396 -132994744 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 326 264 107 0 chrX 43979412 43979539 -132994601 - L1MC/D LINE L1 -463 5699 5558 220 303 109 40 chrX 43980591 43980766 -132993374 - L2 LINE L2 -527 2787 2601 2457 115 93 25 chrX 43981620 43982019 -132992121 - MSTC LTR MaLR 0 428 3 459 285 13 0 chrX 43982247 43982398 -132991742 - L1ME LINE L1 -362 5808 5656 22 0 0 0 chrX 43983226 43983248 -132990892 + AT_rich Low_complexity Low_complexity 1 22 0 2593 137 81 19 chrX 43983969 43984547 -132989593 + MER4B LTR ERV1 1 779 0 2333 164 39 116 chrX 43984750 43985477 -132988663 - LTR8 LTR ERV1 -20 671 1 503 214 0 27 chrX 43985504 43985643 -132988497 - L1PA8A LINE L1 0 6131 6019 239 111 0 0 chrX 43985643 43985688 -132988452 - L1PA4 LINE L1 -116 6039 5995 18346 52 2 2 chrX 43985981 43989105 -132985035 - L1PA4 LINE L1 -3 6152 3028 477 91 0 0 chrX 43989148 43989214 -132984926 - AluSq/x SINE Alu -182 131 66 886 134 0 42 chrX 43989214 43989356 -132984784 + AluSg/x SINE Alu 168 303 -9 4457 128 71 11 chrX 43989392 43990220 -132983920 + Tigger3(Golem) DNA MER2_type 2150 3027 -2 207 213 0 21 chrX 43990222 43990269 -132983871 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 27 29 0 0 chrX 43990562 43990596 -132983544 + AT_rich Low_complexity Low_complexity 1 34 0 316 236 67 0 chrX 43990833 43990922 -132983218 - MIR SINE MIR -21 241 147 2422 53 0 10 chrX 43990944 43991304 -132982836 - AluY SINE Alu 0 311 1 917 203 74 12 chrX 43991309 43991656 -132982484 - MLT1E2 LTR MaLR -1 625 206 246 32 0 0 chrX 43992254 43992285 -132981855 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 219 114 0 0 chrX 43994091 43994126 -132980014 + (CA)n Simple_repeat Simple_repeat 1 35 0 956 266 87 46 chrX 43994465 43994526 -132979614 - HAL1 LINE L1 -4 2503 2446 1536 221 45 11 chrX 43994526 43994879 -132979261 - MLT1A1 LTR MaLR 0 365 1 956 266 87 46 chrX 43994879 43995452 -132978688 - HAL1 LINE L1 -61 2446 1843 204 214 0 0 chrX 43995799 43995841 -132978299 + (TG)n Simple_repeat Simple_repeat 2 43 0 279 71 0 0 chrX 43995984 43996026 -132978114 + (TG)n Simple_repeat Simple_repeat 1 42 0 2076 135 5 60 chrX 43996223 43996264 -132977876 + THE1B LTR MaLR 1 43 -321 2293 97 3 3 chrX 43996264 43996562 -132977578 - AluSg SINE Alu -8 302 5 2076 135 5 60 chrX 43996562 43996905 -132977235 + THE1B LTR MaLR 43 364 0 593 226 189 25 chrX 43997585 43997828 -132976312 - LTR40b LTR ERVL -2 460 178 1756 163 53 94 chrX 43997838 43998361 -132975779 - L1MA9 LINE L1 -24 6288 5787 244 75 75 25 chrX 43998368 43998448 -132975692 + (TA)n Simple_repeat Simple_repeat 1 84 0 710 145 7 7 chrX 43998472 43998610 -132975530 - L1MA9 LINE L1 -1517 4629 4492 1627 190 32 0 chrX 43998614 43998962 -132975178 - L1M2 LINE L1 -526 5786 5428 6683 220 33 31 chrX 43998974 44001650 -132972490 - L1MA2 LINE L1 0 7723 5053 2100 120 9 29 chrX 44001650 44001966 -132972174 - AluSg SINE Alu 0 310 1 6683 220 33 31 chrX 44001966 44002168 -132971972 - L1MA2 LINE L1 -2670 5053 4853 1545 155 14 22 chrX 44002168 44002446 -132971694 - AluSx SINE Alu -6 306 31 6683 220 33 31 chrX 44002446 44002460 -132971680 - L1MA2 LINE L1 -2870 4853 4841 2276 89 3 10 chrX 44002460 44002764 -132971376 - AluSc SINE Alu -7 302 1 6683 220 33 31 chrX 44002764 44004113 -132970027 - L1MA2 LINE L1 -2882 4841 3458 432 0 0 0 chrX 44004113 44004161 -132969979 + (TG)n Simple_repeat Simple_repeat 2 49 0 6683 220 33 31 chrX 44004161 44004297 -132969843 - L1MA2 LINE L1 -4265 3458 3324 6508 116 18 37 chrX 44004299 44005390 -132968750 - MER11C LTR ERVK 0 1071 1 3081 57 50 2 chrX 44005390 44005810 -132968330 - HERVK11 LTR ERVK 0 7953 7514 5140 74 7 8 chrX 44005811 44006525 -132967615 + L1PA4 LINE L1 1 713 -5433 * 26983 51 3 1 chrX 44006524 44010887 -132963253 + L1PA4 LINE L1 1780 6147 -8 4493 51 5 0 chrX 44010904 44011473 -132962667 - HERVK11 LTR ERVK -427 7526 6955 * 40821 73 10 2 chrX 44011461 44016849 -132957291 - HERVK11 LTR ERVK -1188 6765 1332 6422 243 81 23 chrX 44016971 44018549 -132955591 - L1MA2 LINE L1 -5793 1772 91 1983 147 7 0 chrX 44018549 44018842 -132955298 - AluSx SINE Alu -17 295 1 6422 243 81 23 chrX 44018842 44018927 -132955213 - L1MA2 LINE L1 -7474 91 12 1500 236 37 3 chrX 44018957 44019339 -132954801 - L1 LINE L1 -907 5239 4845 823 150 0 8 chrX 44019339 44019472 -132954668 + MER4A LTR ERV1 1 132 -532 2344 107 7 0 chrX 44019472 44019780 -132954360 + AluSg SINE Alu 1 310 0 250 150 83 0 chrX 44019782 44019842 -132954298 + MER4A LTR ERV1 101 165 -499 4708 228 26 12 chrX 44019982 44020420 -132953720 - L1 LINE L1 -1298 4848 4418 1333 150 0 5 chrX 44020420 44020627 -132953513 + L1PA14 LINE L1 5956 6161 0 4708 228 26 12 chrX 44020627 44021432 -132952708 - L1 LINE L1 -1728 4418 3587 788 292 25 7 chrX 44021430 44021707 -132952433 + L1 LINE L1 2596 2877 -3269 * 1444 96 0 55 chrX 44021707 44021925 -132952215 - AluY SINE Alu -8 303 98 992 252 87 8 chrX 44021925 44022294 -132951846 + L1 LINE L1 2866 3263 -2883 * 7883 271 47 24 chrX 44022293 44025576 -132948564 + L1PA12 LINE L1 1 2639 -4945 1882 157 178 22 chrX 44025576 44025946 -132948194 - MSTA LTR MaLR 0 428 1 7883 271 47 24 chrX 44025946 44027133 -132947007 + L1PA12 LINE L1 2639 3797 -3787 411 203 8 41 chrX 44027249 44027372 -132946768 + L1 LINE L1 3633 3751 -2395 1875 161 161 13 chrX 44027372 44027745 -132946395 - MSTA LTR MaLR 0 428 1 4855 213 8 14 chrX 44027745 44028676 -132945464 - MSTA-int LTR MaLR 0 1580 656 1376 210 78 0 chrX 44028676 44028971 -132945169 - MSTA-int LTR MaLR -1260 320 3 262 162 20 0 chrX 44028973 44029022 -132945118 - THE1B LTR MaLR 0 364 323 12906 113 5 20 chrX 44029023 44035024 -132939116 + L1PA6 LINE L1 11 6122 -32 2971 9 0 0 chrX 44035024 44035342 -132938798 - AluYb8 SINE Alu 0 318 1 12906 113 5 20 chrX 44035342 44035375 -132938765 + L1PA6 LINE L1 6122 6154 0 3280 55 3 0 chrX 44035380 44035761 -132938379 + L1PA6 LINE L1 5770 6151 -3 1072 223 179 18 chrX 44035761 44036102 -132938038 - MSTB LTR MaLR -30 396 1 2797 213 11 0 chrX 44036102 44036657 -132937483 + L1P LINE L1 3747 4307 -1839 844 187 0 91 chrX 44036974 44037204 -132936936 + L1P LINE L1 4447 4655 -1491 32459 128 25 35 chrX 44037205 44043359 -132930781 + L1PA8A LINE L1 2 6099 -32 234 0 0 0 chrX 44043384 44043410 -132930730 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 492 141 0 0 chrX 44043417 44043495 -132930645 + L1PA6 LINE L1 6064 6141 -13 189 74 0 0 chrX 44043498 44043525 -132930615 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 965 186 0 0 chrX 44043531 44043724 -132930416 + L1P LINE L1 4643 4835 -1311 2946 137 4 4 chrX 44043733 44044185 -132929955 - MER41A LTR ERV1 -101 453 2 11990 130 19 18 chrX 44044186 44044856 -132929284 - MER41A-int LTR ERV1 -2 5944 5276 1813 142 0 25 chrX 44044856 44045181 -132928959 - AluSq SINE Alu 0 326 9 11990 130 19 18 chrX 44045181 44045910 -132928230 - MER41A-int LTR ERV1 -670 5276 4549 1952 188 36 28 chrX 44045910 44046271 -132927869 - THE1B LTR MaLR 0 364 1 11990 130 19 18 chrX 44046271 44047438 -132926702 - MER41A-int LTR ERV1 -1397 4549 2555 6444 111 21 4 chrX 44047439 44048860 -132925280 - L1PA7 LINE L1 -3 6466 5031 8056 138 4 35 chrX 44048863 44050250 -132923890 - L1PA7 LINE L1 -1554 4907 3564 * 42208 65 3 1 chrX 44050239 44056381 -132917759 - L1PA4 LINE L1 0 6155 4 13652 164 18 112 chrX 44056386 44059992 -132914148 - L1PA7 LINE L1 -2882 3579 2 2388 167 56 12 chrX 44059987 44060491 -132913649 - MER41A-int LTR ERV1 -3687 4129 3604 * 1420 169 6 114 chrX 44060491 44060616 -132913524 + AluJo SINE Alu 1 138 -174 7473 32 1 0 chrX 44060616 44061556 -132912584 + L1PA3 LINE L1 5207 6147 -8 1420 169 6 114 chrX 44061556 44061762 -132912378 + AluJo SINE Alu 138 296 -16 1879 138 52 2 chrX 44061768 44062195 -132911945 - MER41A-int LTR ERV1 -4199 3617 1081 * 3256 165 80 3 chrX 44062183 44062771 -132911369 - MER41A-int LTR ERV1 -5313 633 1 3603 129 0 0 chrX 44062860 44063411 -132910729 - MER41A LTR ERV1 -3 551 1 1500 211 60 9 chrX 44063412 44063762 -132910378 + LOR1b LTR ERV1 94 461 0 1858 188 9 3 chrX 44063775 44064116 -132910024 + LOR1b-int LTR ERV1 29 371 -7749 1184 202 12 12 chrX 44064133 44064381 -132909759 + LOR1-int LTR ERV1 203 450 -7670 2318 148 55 72 chrX 44064454 44065023 -132909117 + LOR1-int LTR ERV1 451 1009 -7111 574 167 0 0 chrX 44065025 44065115 -132909025 - AluJb SINE Alu -23 289 200 1035 176 73 42 chrX 44065115 44065428 -132908712 - LOR1-int LTR ERV1 -3540 4580 4258 10313 171 96 13 chrX 44065540 44067441 -132906699 + L1M1 LINE L1 1294 3036 -4529 365 0 22 0 chrX 44067441 44067486 -132906654 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 10313 171 96 13 chrX 44067486 44067843 -132906297 + L1M1 LINE L1 3036 3362 -4203 2319 170 24 5 chrX 44067843 44068260 -132905880 - MSTA LTR MaLR 0 428 4 10313 171 96 13 chrX 44068260 44068374 -132905766 + L1M1 LINE L1 3362 3860 -3705 259 232 58 0 chrX 44068511 44068580 -132905560 - MER63 DNA MER1_type -362 700 2 274 130 0 0 chrX 44068783 44068829 -132905311 - L1 LINE L1 -2334 3812 3767 1675 175 3 15 chrX 44068865 44069202 -132904938 - L1 LINE L1 -1113 5033 4701 5244 188 33 26 chrX 44069231 44070344 -132903796 + THE1-int LTR MaLR 427 1547 -33 1494 251 41 16 chrX 44070342 44070907 -132903233 - L1 LINE L1 -2938 3208 2630 * 752 155 52 32 chrX 44071103 44071258 -132902882 - LTR49 LTR ERV1 0 595 438 2931 200 42 3 chrX 44071426 44072075 -132902065 + L1M1 LINE L1 1756 2429 -5136 261 224 0 79 chrX 44072075 44072151 -132901989 + AluJ/FRAM SINE Alu 233 302 0 365 202 28 0 chrX 44072151 44072260 -132901880 + L1M1 LINE L1 2422 2533 -5032 508 78 26 0 chrX 44072261 44072338 -132901802 - L1PA7 LINE L1 -8 6146 6068 3348 147 2 0 chrX 44072344 44072881 -132901259 + L1P LINE L1 11 548 -5598 1850 52 0 0 chrX 44072885 44073136 -132901004 + L1P LINE L1 2382 2632 -3514 * 17904 60 4 1 chrX 44073135 44075604 -132898536 - L1P LINE L1 -1248 4898 2423 27973 49 3 2 chrX 44075619 44080132 -132894008 - L1PA4 LINE L1 -8 6147 1631 42138 78 9 2 chrX 44080137 44085889 -132888251 + HERVK11 LTR ERVK 970 6765 -1188 4493 51 5 0 chrX 44085877 44086446 -132887694 + HERVK11 LTR ERVK 6955 7526 -427 * 3099 45 0 3 chrX 44086466 44086843 -132887297 - L1PA6 LINE L1 -11 6143 5768 432 151 11 32 chrX 44087013 44087106 -132887034 + ERVL LTR ERVL 5537 5627 -137 5440 244 143 25 chrX 44087109 44089550 -132884590 - L1M2 LINE L1 -4185 2922 154 1733 132 4 0 chrX 44089550 44089792 -132884348 - AluSx SINE Alu -16 296 54 5440 244 143 25 chrX 44089792 44089961 -132884179 - L1M2 LINE L1 -6953 154 6 2255 94 13 7 chrX 44089990 44090288 -132883852 + AluSp SINE Alu 1 300 -13 696 250 39 58 chrX 44090343 44090651 -132883489 - L1MB8 LINE L1 -16 6162 5861 2452 209 42 32 chrX 44090690 44090951 -132883189 - L1MB8 LINE L1 -290 5884 5627 1993 82 96 14 chrX 44090951 44091233 -132882907 - AluSx SINE Alu -7 305 1 2452 209 42 32 chrX 44091233 44091565 -132882575 - L1MB8 LINE L1 -547 5627 5300 1878 139 3 37 chrX 44091565 44091890 -132882250 - AluSx SINE Alu 0 315 1 2452 209 42 32 chrX 44091890 44092648 -132881492 - L1MB8 LINE L1 -874 5300 4521 28 0 0 0 chrX 44092971 44092999 -132881141 + AT_rich Low_complexity Low_complexity 1 28 0 206 79 0 53 chrX 44093487 44093525 -132880615 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chrX 44094290 44094316 -132879824 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chrX 44094494 44094526 -132879614 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chrX 44094603 44094627 -132879513 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chrX 44095190 44095225 -132878915 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 44095894 44095916 -132878224 + AT_rich Low_complexity Low_complexity 1 22 0 1999 135 0 10 chrX 44096426 44096723 -132877417 + AluSc SINE Alu 3 296 -13 219 331 0 0 chrX 44097135 44097262 -132876878 + A-rich Low_complexity Low_complexity 1 127 0 1575 54 10 0 chrX 44098031 44098234 -132875906 - L1PA5 LINE L1 -15 6139 5935 235 232 0 18 chrX 44098388 44098444 -132875696 + GA-rich Low_complexity Low_complexity 1 55 0 11532 110 10 56 chrX 44099001 44105392 -132868748 + L1PA7 LINE L1 2 6150 -4 198 0 0 0 chrX 44107393 44107415 -132866725 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 465 178 0 0 chrX 44109198 44109316 -132864824 + (TG)n Simple_repeat Simple_repeat 1 118 0 380 236 0 8 chrX 44109813 44109940 -132864200 + GA-rich Low_complexity Low_complexity 2 127 0 212 122 20 20 chrX 44111429 44111478 -132862662 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 352 300 18 0 chrX 44113251 44113421 -132860719 + (TG)n Simple_repeat Simple_repeat 2 174 0 333 191 29 0 chrX 44113858 44113963 -132860177 + GA-rich Low_complexity Low_complexity 2 109 0 705 136 32 7 chrX 44113979 44114134 -132860006 + GA-rich Low_complexity Low_complexity 2 160 0 182 253 0 13 chrX 44114154 44114233 -132859907 + GA-rich Low_complexity Low_complexity 2 79 0 289 103 0 0 chrX 44116199 44116238 -132857902 - Alu SINE Alu -264 39 1 11881 194 32 7 chrX 44116239 44117743 -132856397 + L1MA2 LINE L1 2428 3892 -2412 7636 34 1 0 chrX 44117743 44119081 -132855059 + L1PA3 LINE L1 4817 6155 0 11881 194 32 7 chrX 44119081 44120930 -132853210 + L1MA2 LINE L1 3892 5891 -413 3057 167 39 78 chrX 44120930 44121649 -132852491 + LTR8 LTR ERV1 1 691 0 11881 194 32 7 chrX 44121649 44122074 -132852066 + L1MA2 LINE L1 5891 6304 0 1540 207 3 6 chrX 44122081 44122400 -132851740 + LOR1-int LTR ERV1 4706 5023 -3097 642 222 0 0 chrX 44122401 44122509 -132851631 - LTR32 LTR ERVL -246 225 118 1280 130 0 0 chrX 44122509 44122693 -132851447 - AluSg SINE Alu 0 312 129 43148 56 2 0 chrX 44122695 44128818 -132845322 - L1PA4 LINE L1 -14 6141 7 954 148 0 7 chrX 44128820 44128969 -132845171 - AluSg SINE Alu -162 148 1 302 265 51 60 chrX 44128969 44129086 -132845054 - LTR32 LTR ERVL -343 128 13 603 233 19 102 chrX 44129096 44129311 -132844829 - HERVL32 LTR ERVL -7 3411 3215 * 1514 317 43 40 chrX 44129229 44130096 -132844044 - PRIMA41-int LTR ERV1 -305 7451 6583 1560 128 5 0 chrX 44130354 44130572 -132843568 + AluSp SINE Alu 1 219 -94 325 113 0 0 chrX 44130572 44130625 -132843515 + AluSp SINE Alu 251 303 0 1778 194 77 17 chrX 44131061 44131463 -132842677 - MSTB LTR MaLR 0 426 1 6642 224 60 69 chrX 44132292 44132659 -132841481 - HERVL32 LTR ERVL -223 3195 2826 2171 111 0 0 chrX 44132659 44132965 -132841175 + AluSg SINE Alu 1 306 0 6642 224 60 69 chrX 44132965 44134746 -132839394 - HERVL32 LTR ERVL -592 2826 1438 2357 186 25 20 chrX 44134746 44135193 -132838947 - LTR32 LTR ERVL -13 458 10 28 29 0 0 chrX 44135832 44135867 -132838273 + AT_rich Low_complexity Low_complexity 1 35 0 19769 193 35 17 chrX 44136159 44138837 -132835303 + L1M1 LINE L1 12 2640 -4925 2575 105 8 0 chrX 44138837 44139189 -132834951 + THE1A LTR MaLR 1 355 0 10583 123 27 0 chrX 44139189 44140727 -132833413 + THE1A-int LTR MaLR 1 1580 0 2636 99 3 0 chrX 44140727 44141081 -132833059 + THE1A LTR MaLR 1 355 0 19769 193 35 17 chrX 44141081 44141141 -132832999 + L1M1 LINE L1 2640 2697 -4868 2020 158 0 0 chrX 44141141 44141438 -132832702 + AluSx SINE Alu 1 297 -15 19769 193 35 17 chrX 44141438 44142190 -132831950 + L1M1 LINE L1 2697 3434 -4131 1767 121 71 14 chrX 44142190 44142351 -132831789 - AluSp SINE Alu -15 298 113 222 91 0 0 chrX 44142351 44142384 -132831756 + (TG)n Simple_repeat Simple_repeat 2 34 0 1767 121 71 14 chrX 44142384 44142504 -132831636 - AluSp SINE Alu -200 113 1 19769 193 35 17 chrX 44142504 44143267 -132830873 + L1M1 LINE L1 3434 4182 -3383 1969 99 52 4 chrX 44143267 44143560 -132830580 + AluY SINE Alu 1 306 0 19769 193 35 17 chrX 44143560 44144086 -132830054 + L1M1 LINE L1 4182 4901 -2664 1908 164 3 3 chrX 44144086 44144385 -132829755 + AluSx SINE Alu 1 299 -13 19769 193 35 17 chrX 44144385 44144544 -132829596 + L1M1 LINE L1 4901 5056 -2509 * 27983 132 15 73 chrX 44144531 44145760 -132828380 - L1PA8 LINE L1 -5 6167 4869 2135 137 0 0 chrX 44145760 44146060 -132828080 - AluSq SINE Alu -13 300 1 27983 132 15 73 chrX 44146060 44151372 -132822768 - L1PA8 LINE L1 -1303 4869 12 27 0 0 0 chrX 44151717 44151744 -132822396 + AT_rich Low_complexity Low_complexity 1 27 0 831 150 0 0 chrX 44151927 44152054 -132822086 + L1PB3 LINE L1 6010 6136 -18 1828 288 61 36 chrX 44152058 44153503 -132820637 - L1M3de LINE L1 -4752 1203 12 1295 96 5 16 chrX 44153587 44153775 -132820365 + L1PA8 LINE L1 5985 6170 -2 487 321 84 20 chrX 44153866 44154162 -132819978 + MLT1K LTR MaLR 158 472 -116 204 309 81 37 chrX 44154168 44154304 -132819836 + L2 LINE L2 3172 3313 0 1594 115 167 0 chrX 44154382 44154634 -132819506 + AluSx SINE Alu 1 294 -18 420 330 74 41 chrX 44154652 44154921 -132819219 - L1M4 LINE L1 -1161 4985 4726 1832 175 11 0 chrX 44154921 44155207 -132818933 - AluSx SINE Alu -23 289 1 420 330 74 41 chrX 44155207 44155449 -132818691 - L1M4 LINE L1 -1420 4726 4457 14700 69 6 0 chrX 44155498 44157992 -132816148 + L1PA4 LINE L1 2 2517 -3629 4325 60 0 9 chrX 44157992 44158537 -132815603 + L1PA4 LINE L1 5612 6153 -2 * 23197 42 5 0 chrX 44158536 44162153 -132811987 + L1PA4 LINE L1 2527 6152 -3 1595 177 33 0 chrX 44162272 44162543 -132811597 + AluJo SINE Alu 2 281 -31 322 233 0 0 chrX 44162543 44162616 -132811524 - L1MC4 LINE L1 -1334 6708 6636 413 147 13 13 chrX 44162710 44162785 -132811355 - MADE1 DNA Mariner -5 75 1 2073 255 24 6 chrX 44162993 44163499 -132810641 + MLT2B2 LTR ERVL 1 515 0 4513 239 72 15 chrX 44163500 44164151 -132809989 + ERVL-B2 LTR ERVL 2 749 -5015 203 0 0 36 chrX 44164151 44164179 -132809961 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 4513 239 72 15 chrX 44164179 44164674 -132809466 + ERVL-B2 LTR ERVL 749 1214 -4550 11574 118 13 56 chrX 44164682 44166689 -132807451 + L1PA7 LINE L1 3 1931 -4530 19251 114 10 5 chrX 44166698 44170444 -132803696 + L1PA7 LINE L1 2715 6465 -4 3214 217 19 24 chrX 44170941 44171578 -132802562 + ERVL-B2 LTR ERVL 1206 1839 -3925 * 5616 192 6 1 chrX 44171574 44172548 -132801592 + ERVL-B2 LTR ERVL 2040 3018 -2746 542 223 0 9 chrX 44172548 44172660 -132801480 + ERVL LTR ERVL 5043 5153 -611 192 40 0 0 chrX 44174402 44174427 -132799713 + (TG)n Simple_repeat Simple_repeat 2 26 0 506 242 0 15 chrX 44175038 44175297 -132798843 + GA-rich Low_complexity Low_complexity 1 254 0 323 192 0 10 chrX 44179691 44179790 -132794350 + (TG)n Simple_repeat Simple_repeat 1 98 0 528 226 4 18 chrX 44180303 44180582 -132793558 + GA-rich Low_complexity Low_complexity 1 274 0 323 207 0 9 chrX 44184025 44184136 -132790004 + (TG)n Simple_repeat Simple_repeat 1 110 0 341 247 17 6 chrX 44184640 44184818 -132789322 + GA-rich Low_complexity Low_complexity 1 180 0 234 0 0 0 chrX 44186216 44186242 -132787898 + (A)n Simple_repeat Simple_repeat 1 26 0 13748 184 43 22 chrX 44186874 44191772 -132782368 + L1MA1 LINE L1 2562 6298 -4 390 175 0 26 chrX 44191781 44191865 -132782275 + MER21A LTR ERV1 1 83 -780 189 0 0 0 chrX 44191968 44191989 -132782151 + (TC)n Simple_repeat Simple_repeat 2 22 0 468 143 0 0 chrX 44191989 44192073 -132782067 + (TA)n Simple_repeat Simple_repeat 2 85 0 2972 164 63 131 chrX 44192074 44193001 -132781139 + MER21A LTR ERV1 82 904 -27 1401 227 65 20 chrX 44193078 44193527 -132780613 + L1MC4 LINE L1 7574 8042 0 411 240 35 29 chrX 44193530 44193701 -132780439 - Charlie2a DNA MER1_type -1714 1148 977 22 0 0 0 chrX 44194693 44194715 -132779425 + AT_rich Low_complexity Low_complexity 1 22 0 1944 132 14 3 chrX 44194723 44195018 -132779122 + AluSx SINE Alu 1 298 -14 522 278 137 14 chrX 44196232 44196444 -132777696 + MIR SINE MIR 1 238 -24 1363 193 0 33 chrX 44198835 44199172 -132774968 - pTR5 LTR ERV1 -1371 1067 742 279 202 0 0 chrX 44199986 44200070 -132774070 + (TG)n Simple_repeat Simple_repeat 1 84 0 241 279 0 0 chrX 44200603 44200664 -132773476 + A-rich Low_complexity Low_complexity 3 63 0 502 228 0 12 chrX 44200664 44200835 -132773305 + GA-rich Low_complexity Low_complexity 3 171 0 195 42 0 0 chrX 44201754 44201778 -132772362 + (T)n Simple_repeat Simple_repeat 1 24 0 2797 189 80 17 chrX 44201975 44202635 -132771505 - Tigger7 DNA MER2_type -2 2585 2 1373 235 64 30 chrX 44202708 44203180 -132770960 - L1MC4 LINE L1 -124 7918 7431 1676 219 75 96 chrX 44203721 44204360 -132769780 - MLT1E2 LTR MaLR 0 626 1 185 317 0 17 chrX 44204456 44204516 -132769624 - L2 LINE L2 -23 3290 3232 801 360 153 10 chrX 44204815 44205149 -132768991 - L2 LINE L2 -460 2854 2569 1669 184 61 48 chrX 44205149 44205541 -132768599 - MLT2C1 LTR ERVL 0 397 1 801 360 153 10 chrX 44205541 44206134 -132768006 - L2 LINE L2 -745 2569 1794 488 243 117 15 chrX 44206757 44207082 -132767058 + L1M4 LINE L1 2843 3200 -2946 565 273 197 19 chrX 44207200 44207621 -132766519 + L1M4 LINE L1 3942 4437 -1709 598 255 204 5 chrX 44208081 44208297 -132765843 + MIR SINE MIR 4 262 0 1959 124 0 58 chrX 44208356 44208716 -132765424 - AluSx SINE Alu 0 341 1 191 328 168 23 chrX 44208940 44209071 -132765069 + L2 LINE L2 3122 3271 -1 2208 104 16 7 chrX 44209451 44209759 -132764381 - AluSq SINE Alu -2 311 1 521 203 68 25 chrX 44209986 44210149 -132763991 - L1MC5 LINE L1 -30 7931 7762 443 237 13 45 chrX 44211284 44211440 -132762700 + MER104 DNA Tc2 30 180 0 234 313 0 0 chrX 44211823 44211887 -132762253 + L2 LINE L2 3207 3270 -2 265 366 60 16 chrX 44211956 44212207 -132761933 - L2 LINE L2 -1007 2307 2046 934 213 46 32 chrX 44212215 44212431 -132761709 - MER20 DNA MER1_type 0 219 1 192 319 21 75 chrX 44212444 44212538 -132761602 + L2 LINE L2 2371 2459 -855 763 138 51 7 chrX 44212871 44213009 -132761131 - L1MB2 LINE L1 -9 6162 6019 2641 111 3 3 chrX 44213421 44213791 -132760349 - L1PB1 LINE L1 0 6151 5782 222 37 0 0 chrX 44213794 44213821 -132760319 + (CA)n Simple_repeat Simple_repeat 2 28 0 212 231 8 0 chrX 44213816 44213946 -132760194 + (TA)n Simple_repeat Simple_repeat 2 132 0 * 516 170 0 0 chrX 44213987 44214093 -132760047 + (TA)n Simple_repeat Simple_repeat 1 106 0 227 146 0 0 chrX 44214096 44214137 -132760003 - LTR66 LTR ERVL -175 435 395 308 276 35 0 chrX 44214144 44214231 -132759909 + L1MC4 LINE L1 6614 6703 -1339 344 169 13 0 chrX 44214234 44214311 -132759829 + (TA)n Simple_repeat Simple_repeat 1 78 0 298 289 0 0 chrX 44214329 44214471 -132759669 + (TA)n Simple_repeat Simple_repeat 1 142 0 3522 119 11 10 chrX 44214513 44215184 -132758956 - L1P5 LINE L1 -360 5791 5118 357 208 12 125 chrX 44215214 44215332 -132758808 - L1M4 LINE L1 -1000 5146 5051 2172 102 3 3 chrX 44215332 44215626 -132758514 - AluSp SINE Alu -19 294 1 357 208 12 125 chrX 44215626 44215675 -132758465 - L1M4 LINE L1 -1095 5051 4998 779 208 6 12 chrX 44216049 44216365 -132757775 + GA-rich Low_complexity Low_complexity 1 314 0 243 0 0 0 chrX 44217586 44217613 -132756527 + (A)n Simple_repeat Simple_repeat 1 27 0 251 252 0 9 chrX 44220811 44220918 -132753222 + (TG)n Simple_repeat Simple_repeat 2 107 0 360 94 0 0 chrX 44221451 44221504 -132752636 + (GGA)n Simple_repeat Simple_repeat 2 54 0 1213 216 38 50 chrX 44221628 44221896 -132752244 + MER20B DNA MER1_type 301 566 -217 1930 159 3 0 chrX 44221896 44222192 -132751948 - AluJb SINE Alu -15 297 1 1213 216 38 50 chrX 44222192 44222265 -132751875 + MER20B DNA MER1_type 566 638 -145 964 316 138 28 chrX 44222443 44223221 -132750919 + L2 LINE L2 1891 2753 -561 1175 214 27 8 chrX 44223756 44224018 -132750122 - L1ME3 LINE L1 -2 6160 5894 321 197 0 0 chrX 44224023 44224084 -132750056 - L1PA16 LINE L1 -9 6157 6097 3779 136 7 5 chrX 44224096 44224684 -132749456 - L1PA16 LINE L1 -162 6004 5416 2244 112 3 6 chrX 44224839 44225152 -132748988 - AluSx SINE Alu 0 312 1 299 388 137 8 chrX 44225351 44225606 -132748534 - L2 LINE L2 -8 3264 2977 910 297 84 70 chrX 44225614 44226439 -132747701 - L2 LINE L2 -952 2362 1527 2478 198 57 56 chrX 44226440 44227206 -132746934 + L1M4 LINE L1 2499 3268 -2878 8175 29 0 0 chrX 44227206 44228543 -132745597 + L1PA3 LINE L1 4822 6152 -3 2478 198 57 56 chrX 44228543 44228564 -132745576 + L1M4 LINE L1 3268 3287 -2859 25 0 0 0 chrX 44228566 44228591 -132745549 + AT_rich Low_complexity Low_complexity 1 25 0 1592 162 38 0 chrX 44228924 44229190 -132744950 + AluSx SINE Alu 1 276 -36 222 37 0 0 chrX 44229196 44229223 -132744917 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 260 157 24 36 chrX 44229897 44229980 -132744160 + GA-rich Low_complexity Low_complexity 1 82 0 1898 143 65 3 chrX 44230294 44230587 -132743553 + AluSx SINE Alu 2 312 0 2314 104 7 0 chrX 44232645 44232954 -132741186 + AluSp SINE Alu 1 311 -2 353 243 13 13 chrX 44234455 44234607 -132739533 + CT-rich Low_complexity Low_complexity 2 153 0 246 182 0 0 chrX 44235091 44235157 -132738983 + (CA)n Simple_repeat Simple_repeat 1 66 0 180 0 0 0 chrX 44236944 44236964 -132737176 + (A)n Simple_repeat Simple_repeat 1 20 0 12655 196 87 13 chrX 44237110 44238420 -132735720 - L1PBa LINE L1 -1101 5761 4548 1940 130 0 14 chrX 44238420 44238822 -132735318 - AluSg SINE Alu 0 398 1 12655 196 87 13 chrX 44238822 44240446 -132733694 - L1PBa LINE L1 -2314 4548 3044 209 32 0 32 chrX 44240446 44240477 -132733663 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 12655 196 87 13 chrX 44240477 44242879 -132731261 - L1PBa LINE L1 -3818 3044 3 15347 198 40 12 chrX 44242890 44243237 -132730903 - L1P LINE L1 -746 5400 5064 2319 127 39 33 chrX 44243237 44243599 -132730541 - THE1B LTR MaLR 0 364 1 15347 198 40 12 chrX 44243599 44244895 -132729245 - L1P LINE L1 -1082 5064 3805 255 31 0 0 chrX 44244895 44244927 -132729213 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 15347 198 40 12 chrX 44244927 44246630 -132727510 - L1P LINE L1 -2341 3805 1962 812 217 26 20 chrX 44246625 44246777 -132727363 - L1PA13 LINE L1 -5425 1362 1210 * 1154 231 68 3 chrX 44246777 44247085 -132727055 - LTR37B LTR ERV1 -108 360 33 1252 249 142 34 chrX 44247546 44248004 -132726136 - MLT1F1 LTR MaLR -42 525 22 1695 163 45 6 chrX 44248125 44248457 -132725683 - L1MA7 LINE L1 -4 6287 5943 330 285 144 30 chrX 44248472 44248805 -132725335 + L1ME LINE L1 5400 5770 -351 * 4291 258 35 63 chrX 44248794 44249851 -132724289 + L1PA11 LINE L1 1 1086 -6498 4354 107 15 7 chrX 44249851 44250457 -132723683 - L1PB1 LINE L1 -2 6149 5539 4291 258 35 63 chrX 44250457 44251694 -132722446 + L1PA11 LINE L1 1086 3313 -4271 10027 181 67 8 chrX 44251737 44252899 -132721241 + L1PA11 LINE L1 3583 4675 -2937 210 118 0 0 chrX 44252899 44252933 -132721207 + (A)n Simple_repeat Simple_repeat 1 34 0 10027 181 67 8 chrX 44252933 44253732 -132720408 + L1PA11 LINE L1 4675 5425 -2187 1982 142 6 22 chrX 44253732 44254043 -132720097 + AluSg SINE Alu 1 306 -4 10027 181 67 8 chrX 44254043 44255783 -132718357 + L1PA11 LINE L1 5425 7611 -1 5939 103 14 26 chrX 44255798 44256659 -132717481 + L1P3 LINE L1 2 852 -5609 11349 97 7 4 chrX 44256684 44258278 -132715862 - L1P LINE L1 -879 5267 3670 330 227 220 21 chrX 44258280 44258421 -132715719 + MIR SINE MIR 94 262 0 310 317 99 46 chrX 44258749 44259191 -132714949 + L2 LINE L2 2068 2977 -337 44101 30 21 1 chrX 44259289 44265321 -132708819 - L1HS LINE L1 0 6155 1 391 262 0 0 chrX 44265432 44265516 -132708624 + L2 LINE L2 3230 3313 0 2589 168 19 5 chrX 44266029 44266452 -132707688 + MSTB1 LTR MaLR 4 432 0 184 338 40 27 chrX 44266459 44266533 -132707607 + L2 LINE L2 2875 2949 -323 231 171 0 0 chrX 44266625 44266660 -132707480 + U2 snRNA snRNA 1 35 -153 310 376 8 8 chrX 44266772 44266897 -132707243 - L2 LINE L2 -191 3081 2957 1863 168 0 0 chrX 44267110 44267396 -132706744 - AluSx SINE Alu -26 286 1 328 328 164 23 chrX 44267462 44267981 -132706159 - L2 LINE L2 -1107 2207 1616 428 227 73 55 chrX 44268028 44268138 -132706002 + L2 LINE L2 3187 3298 -15 260 143 18 0 chrX 44268189 44268245 -132705895 + (TG)n Simple_repeat Simple_repeat 2 58 0 339 336 82 0 chrX 44268293 44268439 -132705701 - HAL1 LINE L1 -932 1575 1418 2624 121 3 3 chrX 44268444 44268815 -132705325 - L1PB2 LINE L1 -2 6149 5779 4176 155 8 51 chrX 44268815 44269310 -132704830 - L1PB2 LINE L1 -232 5919 5404 2061 151 3 3 chrX 44269310 44269622 -132704518 - AluSx SINE Alu 0 312 1 4176 155 8 51 chrX 44269622 44270400 -132703740 - L1PB2 LINE L1 -747 5404 4694 792 206 35 6 chrX 44270400 44270570 -132703570 - MIR SINE MIR -87 175 1 249 57 0 0 chrX 44271002 44271037 -132703103 + (TC)n Simple_repeat Simple_repeat 2 36 0 1497 233 11 3 chrX 44271759 44272124 -132702016 - L1MA9 LINE L1 -9 6303 5936 23307 147 86 75 chrX 44272146 44277316 -132696824 + L1PA8A LINE L1 7 5238 -893 2168 130 7 3 chrX 44277316 44277624 -132696516 + AluSx SINE Alu 1 309 -3 23307 147 86 75 chrX 44277624 44277863 -132696277 + L1PA8A LINE L1 5238 5473 -658 25 0 0 0 chrX 44277881 44277906 -132696234 + AT_rich Low_complexity Low_complexity 1 25 0 1104 187 0 120 chrX 44277906 44278206 -132695934 + L1 LINE L1 3806 4069 -2077 * 4709 160 23 4 chrX 44278194 44278434 -132695706 - L1PA15 LINE L1 -2 6163 5924 1524 248 46 22 chrX 44278434 44279219 -132694921 - L1MB7 LINE L1 -259 5925 4632 4143 148 21 18 chrX 44279227 44279907 -132694233 - THE1-int LTR MaLR -38 1542 861 1970 194 39 29 chrX 44279907 44280455 -132693685 + MLT2A2 LTR ERVL 1 554 0 3765 165 4 6 chrX 44280455 44281354 -132692786 + HERVL-A2 LTR ERVL 1 966 -4688 35097 113 15 15 chrX 44281354 44287503 -132686637 - L1PA7 LINE L1 0 6154 11 762 90 0 0 chrX 44287513 44287624 -132686516 + HERVL-A2 LTR ERVL 956 1066 -4588 * 25555 166 36 15 chrX 44287621 44289129 -132685011 + HERVL-A2 LTR ERVL 1193 2668 -3096 2069 104 36 19 chrX 44289129 44289437 -132684703 + AluSp SINE Alu 1 313 0 25555 166 36 15 chrX 44289437 44292333 -132681807 + HERVL-A2 LTR ERVL 2668 5757 -7 1952 185 43 35 chrX 44292333 44292881 -132681259 + MLT2A2 LTR ERVL 1 553 -1 3865 216 31 32 chrX 44292882 44293940 -132680200 - L1PA15 LINE L1 -820 5326 4270 1254 275 29 16 chrX 44293950 44294462 -132679678 - L1PA15 LINE L1 -2948 3198 2680 2071 206 5 14 chrX 44294468 44294836 -132679304 + L1PA12 LINE L1 998 1362 -6219 2524 137 5 8 chrX 44294836 44295208 -132678932 - THE1C LTR MaLR 0 375 5 7198 138 56 25 chrX 44295212 44296399 -132677741 - THE1C-int LTR MaLR 0 1580 358 1983 59 0 0 chrX 44296399 44296653 -132677487 + L1PA5 LINE L1 3674 3927 -2219 7588 54 7 0 chrX 44296653 44298295 -132675845 + L1PA5 LINE L1 4508 6152 -2 2389 126 30 0 chrX 44298298 44298662 -132675478 - THE1C-int LTR MaLR -1205 375 1 1291 159 222 99 chrX 44298662 44298736 -132675404 - THE1C LTR MaLR 0 375 311 1981 132 7 0 chrX 44298736 44299023 -132675117 + AluSq SINE Alu 1 289 -24 1291 159 222 99 chrX 44299023 44299282 -132674858 - THE1C LTR MaLR -64 311 1 11203 186 29 8 chrX 44299282 44300874 -132673266 + L1PA12 LINE L1 1088 2741 -4843 204 40 0 0 chrX 44300874 44300899 -132673241 + (TA)n Simple_repeat Simple_repeat 1 25 0 11203 186 29 8 chrX 44300899 44301536 -132672604 + L1PA12 LINE L1 2741 3363 -4221 10227 142 28 17 chrX 44301539 44303522 -132670618 + L1PA14 LINE L1 1124 3143 -4441 4779 90 17 1 chrX 44303525 44304183 -132669957 + L1PA8 LINE L1 5505 6172 0 6655 93 0 1 chrX 44304184 44305308 -132668832 + L1PA8 LINE L1 5043 6166 -6 675 240 41 45 chrX 44305309 44305576 -132668564 + L1PA14 LINE L1 3352 3617 -3967 19005 218 24 17 chrX 44305589 44311238 -132662902 + L1PA11 LINE L1 9 6761 -823 1949 152 0 3 chrX 44311238 44311550 -132662590 + AluSg SINE Alu 1 310 0 19005 218 24 17 chrX 44311550 44311613 -132662527 + L1PA11 LINE L1 6761 6822 -762 14290 50 1 0 chrX 44311629 44313514 -132660626 - L1P LINE L1 -2987 3159 1274 7525 30 3 0 chrX 44313514 44314752 -132659388 + L1PA3 LINE L1 4912 6152 -3 4444 124 15 1 chrX 44314753 44315465 -132658675 + L1PA11 LINE L1 6822 7543 -69 10718 224 19 28 chrX 44315608 44317273 -132656867 + L1PA14 LINE L1 3609 5238 -2346 1846 176 0 13 chrX 44317273 44317579 -132656561 + AluSx SINE Alu 1 302 -10 10718 224 19 28 chrX 44317579 44318920 -132655220 + L1PA14 LINE L1 5238 6589 -995 40538 55 1 1 chrX 44318970 44325125 -132649015 - L1PA3 LINE L1 -3 6152 1 948 139 20 2 chrX 44325126 44325409 -132648731 + L1PA14 LINE L1 6578 6865 -734 40175 58 3 1 chrX 44325413 44331555 -132642585 + L1PA4 LINE L1 2 6152 -3 4332 135 20 12 chrX 44331565 44332308 -132641832 + L1PA14 LINE L1 6851 7599 0 3790 255 40 17 chrX 44332316 44333708 -132640432 - L1P3 LINE L1 -3453 3008 1592 195 42 0 0 chrX 44333960 44333984 -132640156 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 258 375 100 0 chrX 44334013 44334093 -132640047 - L2 LINE L2 -51 3221 3134 547 245 112 116 chrX 44334292 44334501 -132639639 + MLT1J LTR MaLR 1 209 -302 2006 145 3 0 chrX 44334501 44334798 -132639342 + AluSx SINE Alu 6 303 -9 547 245 112 116 chrX 44334798 44335069 -132639071 + MLT1J LTR MaLR 209 479 -32 7895 115 19 0 chrX 44335118 44337147 -132636993 - L1PA8A LINE L1 -21 6110 4046 248 88 0 0 chrX 44337193 44337227 -132636913 - U2 snRNA snRNA -152 36 3 911 221 0 33 chrX 44337393 44337644 -132636496 + AluJb SINE Alu 107 312 0 189 316 73 93 chrX 44338595 44338842 -132635298 + L2 LINE L2 2580 2821 -493 457 265 93 7 chrX 44338859 44339063 -132635077 - MIR SINE MIR 0 262 2 325 307 22 22 chrX 44339365 44339502 -132634638 - MIR SINE MIR 0 262 126 725 218 109 21 chrX 44339958 44340151 -132633989 + MIR SINE MIR 49 258 -4 210 191 0 0 chrX 44341939 44341981 -132632159 + CT-rich Low_complexity Low_complexity 4 45 0 21 36 0 0 chrX 44342358 44342386 -132631754 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chrX 44343017 44343055 -132631085 + (T)n Simple_repeat Simple_repeat 1 38 0 493 158 0 11 chrX 44343107 44343202 -132630938 + MER4C LTR ERV1 1 94 -371 6204 77 7 0 chrX 44343202 44344098 -132630042 + L1PA8A LINE L1 5203 6103 -28 337 109 0 0 chrX 44344118 44344173 -132629967 + MER4C LTR ERV1 79 133 -332 2201 209 89 86 chrX 44344193 44344796 -132629344 + LTR28 LTR ERV1 30 689 -331 3977 100 8 45 chrX 44344796 44345425 -132628715 + LTR14B LTR ERVK 3 608 0 2201 209 89 86 chrX 44345425 44345754 -132628386 + LTR28 LTR ERV1 689 1015 -5 1989 142 3 6 chrX 44345758 44346088 -132628052 + MER4C LTR ERV1 135 463 -2 500 356 45 75 chrX 44346135 44346511 -132627629 - L2 LINE L2 -12 3260 2896 230 338 149 5 chrX 44346840 44347062 -132627078 - MLT1L LTR MaLR -7 608 355 494 303 28 63 chrX 44347267 44347551 -132626589 - MLT1L LTR MaLR -341 274 1 549 0 0 0 chrX 44347689 44347750 -132626390 + (TA)n Simple_repeat Simple_repeat 2 62 0 470 31 16 0 chrX 44347753 44347817 -132626323 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 255 103 0 0 chrX 44347878 44347917 -132626223 + (CA)n Simple_repeat Simple_repeat 2 40 0 456 56 28 14 chrX 44347965 44348037 -132626103 + L1PA11 LINE L1 6102 6174 0 4468 155 35 5 chrX 44348043 44348895 -132625245 + Tigger3(Golem) DNA MER2_type 2151 3028 -1 3285 203 59 44 chrX 44348896 44349258 -132624882 - L1MC1 LINE L1 -141 6192 5837 1915 106 70 40 chrX 44349258 44349559 -132624581 - AluSg SINE Alu 0 310 1 3285 203 59 44 chrX 44349559 44350091 -132624049 - L1MC1 LINE L1 -496 5837 5284 * 4142 173 60 15 chrX 44350088 44351017 -132623123 - L1MA4A LINE L1 -5 6298 5328 1669 176 158 13 chrX 44351023 44351397 -132622743 + MSTA LTR MaLR 1 428 0 4691 149 2 54 chrX 44351399 44352310 -132621830 + MSTA-int LTR MaLR 3 866 -714 1388 252 44 24 chrX 44352310 44352850 -132621290 - MLT2A2 LTR ERVL -1 553 1 4386 132 14 12 chrX 44352850 44353569 -132620571 + MSTA-int LTR MaLR 861 1580 0 1304 202 151 14 chrX 44353580 44353932 -132620208 + MSTA LTR MaLR 29 428 0 1006 221 47 0 chrX 44353936 44354237 -132619903 - L1M LINE L1 -849 5297 5007 1368 238 29 47 chrX 44354240 44354728 -132619412 - L1MA4A LINE L1 -1617 4529 4051 2188 224 5 2 chrX 44354747 44355193 -132618947 + L1PA13 LINE L1 5 451 -6336 2799 187 31 18 chrX 44355250 44356378 -132617762 - L1M1 LINE L1 -556 5748 4599 2728 186 41 26 chrX 44356624 44357181 -132616959 + LTR39 LTR ERV1 1 609 -174 2113 130 7 0 chrX 44357181 44357482 -132616658 - AluSq SINE Alu -10 303 1 2728 186 41 26 chrX 44357482 44357603 -132616537 + LTR39 LTR ERV1 609 726 -57 2549 83 11 0 chrX 44357603 44357954 -132616186 + THE1A LTR MaLR 1 355 0 11246 107 11 1 chrX 44357954 44359518 -132614622 + THE1A-int LTR MaLR 1 1580 0 2324 116 6 3 chrX 44359518 44359872 -132614268 + THE1A LTR MaLR 1 355 0 244 276 0 0 chrX 44359872 44359930 -132614210 + LTR39 LTR ERV1 726 783 0 1264 234 48 63 chrX 44359954 44360411 -132613729 - MLT1E2 LTR MaLR -104 522 73 560 265 31 26 chrX 44360412 44360673 -132613467 - LTR24B LTR ERV1 0 569 206 288 200 14 29 chrX 44360819 44360889 -132613251 - LTR24B LTR ERV1 -499 77 9 253 203 68 14 chrX 44360898 44360972 -132613168 - MLT1E2 LTR MaLR -427 78 1 360 0 0 0 chrX 44361206 44361246 -132612894 + (CA)n Simple_repeat Simple_repeat 2 41 0 544 296 27 32 chrX 44361297 44361483 -132612657 + MIR SINE MIR 68 252 -10 733 248 68 56 chrX 44361721 44362043 -132612097 - L1MCb LINE L1 -5301 744 419 226 167 0 0 chrX 44362062 44362110 -132612030 - L1PA16 LINE L1 -1 6165 6118 428 167 0 0 chrX 44362139 44362217 -132611923 - L1P4 LINE L1 -442 5724 5647 597 173 87 16 chrX 44362218 44362345 -132611795 - MER4D LTR ERV1 -1 871 736 1276 190 27 11 chrX 44362345 44362608 -132611532 - L1PA16 LINE L1 -75 6091 5825 380 160 27 13 chrX 44362610 44362685 -132611455 + L1P4 LINE L1 5574 5649 -517 1569 147 13 20 chrX 44362693 44362993 -132611147 + MER4D LTR ERV1 8 305 -598 27077 120 25 64 chrX 44363006 44365747 -132608393 + L1PA7 LINE L1 12 2859 -3295 243 0 0 0 chrX 44365747 44365774 -132608366 + (TA)n Simple_repeat Simple_repeat 2 28 0 27077 120 25 64 chrX 44365774 44369429 -132604711 + L1PA7 LINE L1 2859 6147 -7 4906 152 18 8 chrX 44369429 44370456 -132603684 + L1PA15 LINE L1 5128 6164 -1 248 300 67 48 chrX 44370789 44371222 -132602918 + L1MC/D LINE L1 3718 4158 -1988 486 317 51 48 chrX 44371229 44371522 -132602618 + L1MC/D LINE L1 4298 4591 -1555 299 281 103 27 chrX 44371533 44371822 -132602318 + L1MC/D LINE L1 5488 5801 -531 7960 181 41 8 chrX 44371980 44373458 -132600682 + L1PA16 LINE L1 331 1856 -4993 41634 43 1 2 chrX 44373461 44379614 -132594526 + L1PA3 LINE L1 7 6155 0 11467 201 27 21 chrX 44379609 44381804 -132592336 + L1PA16 LINE L1 1838 4019 -2850 * 2302 111 0 0 chrX 44381804 44382111 -132592029 + AluSg SINE Alu 1 307 -3 11467 201 27 21 chrX 44382111 44384907 -132589233 + L1PA16 LINE L1 4019 6863 -6 1765 123 0 83 chrX 44384936 44385260 -132588880 + AluSx SINE Alu 1 297 -15 21 0 0 0 chrX 44385315 44385336 -132588804 + AT_rich Low_complexity Low_complexity 1 21 0 6142 173 48 22 chrX 44385433 44386797 -132587343 + L1MC3 LINE L1 5686 7085 -700 238 276 31 10 chrX 44386797 44386895 -132587245 + MLT1F1 LTR MaLR 24 123 -444 1655 173 83 32 chrX 44386896 44387204 -132586936 + L1MC3 LINE L1 7403 7694 -301 1872 155 26 3 chrX 44387204 44387508 -132586632 + AluJb SINE Alu 1 311 -1 1655 173 83 32 chrX 44387508 44387702 -132586438 + L1MC3 LINE L1 7694 7995 0 1213 196 29 25 chrX 44387714 44387959 -132586181 + AluJo SINE Alu 1 246 -66 1484 309 149 35 chrX 44388836 44389414 -132584726 - L3 LINE CR1 -11 1566 1055 2452 70 3 0 chrX 44389414 44389716 -132584424 + AluSg1 SINE Alu 1 303 -6 1484 309 149 35 chrX 44389716 44390155 -132583985 - L3 LINE CR1 -522 1055 433 604 241 48 48 chrX 44390559 44390746 -132583394 + MIR SINE MIR 2 188 -74 219 353 88 15 chrX 44390792 44390928 -132583212 - L3 LINE CR1 -1210 367 222 1904 135 0 25 chrX 44391344 44391625 -132582515 - AluSx SINE Alu -38 274 1 360 180 48 132 chrX 44393003 44393170 -132580970 + MER103 DNA DNA 2 154 -12 312 332 114 19 chrX 44393241 44393452 -132580688 + L1ME4a LINE L1 4066 4296 -1850 331 276 61 37 chrX 44393681 44393844 -132580296 + L1ME4a LINE L1 4559 4725 -1421 25 0 0 0 chrX 44394190 44394215 -132579925 + AT_rich Low_complexity Low_complexity 1 25 0 412 252 16 31 chrX 44395106 44395233 -132578907 + GA-rich Low_complexity Low_complexity 3 127 0 21 36 0 0 chrX 44397210 44397238 -132576902 + GC_rich Low_complexity Low_complexity 1 28 0 233 163 20 0 chrX 44397631 44397680 -132576460 + L1ME4a LINE L1 5131 5180 -966 * 275 303 10 10 chrX 44397673 44397772 -132576368 + GA-rich Low_complexity Low_complexity 1 99 0 449 302 97 49 chrX 44397897 44398411 -132575729 + L1ME4a LINE L1 5264 5802 -319 25 31 0 0 chrX 44398536 44398568 -132575572 + AT_rich Low_complexity Low_complexity 1 32 0 288 254 0 77 chrX 44398588 44398718 -132575422 + L1ME4a LINE L1 5947 6066 -55 27 0 0 0 chrX 44399136 44399163 -132574977 + AT_rich Low_complexity Low_complexity 1 27 0 374 43 0 0 chrX 44399233 44399280 -132574860 - MADE1 DNA Mariner 0 80 34 481 18 0 0 chrX 44399300 44399356 -132574784 - MADE1 DNA Mariner -24 56 1 293 214 0 18 chrX 44399778 44399834 -132574306 + MER5A DNA MER1_type 46 100 -89 215 253 121 22 chrX 44399782 44399873 -132574267 - MER5A DNA MER1_type -39 150 51 * 1233 195 41 49 chrX 44400658 44400925 -132573215 + AluJb SINE Alu 1 265 -47 264 196 0 0 chrX 44401058 44401104 -132573036 + AluSp/q SINE Alu 223 268 -35 442 302 130 32 chrX 44401285 44401623 -132572517 + L1ME LINE L1 4990 5360 -786 253 283 0 0 chrX 44401623 44401683 -132572457 + GA-rich Low_complexity Low_complexity 4 63 0 501 274 139 35 chrX 44401793 44401994 -132572146 + MIR SINE MIR 41 262 0 292 283 28 62 chrX 44402021 44402166 -132571974 + L1ME LINE L1 5524 5663 -458 447 267 41 35 chrX 44402309 44402481 -132571659 + MIR SINE MIR 6 178 -84 622 296 49 18 chrX 44402887 44403113 -132571027 + MER102b DNA MER1_type 95 327 -14 647 158 8 33 chrX 44403256 44403424 -132570716 + FLAM_C SINE Alu 1 165 0 372 22 0 0 chrX 44403525 44403570 -132570570 + (ATG)n Simple_repeat Simple_repeat 1 45 0 1510 206 69 95 chrX 44404395 44404716 -132569424 + Charlie2 DNA MER1_type 2049 2377 -485 2351 135 15 8 chrX 44404716 44405117 -132569023 - L1MA5 LINE L1 -1 6299 5896 1510 206 69 95 chrX 44405117 44405448 -132568692 + Charlie2 DNA MER1_type 2377 2681 -181 2658 129 24 9 chrX 44405448 44405874 -132568266 - MER57B LTR ERV1 0 434 3 1510 206 69 95 chrX 44405874 44405985 -132568155 + Charlie2 DNA MER1_type 2681 2793 -69 642 217 105 0 chrX 44408219 44408362 -132565778 - MIR SINE MIR -65 197 40 1200 235 88 9 chrX 44408502 44408830 -132565310 - L1ME3A LINE L1 -10 6160 5807 2498 138 44 5 chrX 44408956 44409368 -132564772 + MSTA LTR MaLR 1 428 0 487 354 28 5 chrX 44409408 44409620 -132564520 + MIR SINE MIR 39 255 -7 761 284 73 8 chrX 44409977 44410347 -132563793 - L2 LINE L2 -1134 2180 1787 22963 117 8 10 chrX 44410387 44413916 -132560224 - L1P LINE L1 -2621 3525 4 2033 84 0 3 chrX 44413908 44414192 -132559948 - L1M1 LINE L1 -499 7222 6940 * 2371 135 5 3 chrX 44414192 44414563 -132559577 + THE1C LTR MaLR 1 372 -3 9553 126 28 34 chrX 44414566 44416114 -132558026 + THE1C-int LTR MaLR 1 1538 -42 2281 162 3 5 chrX 44416132 44416503 -132557637 + THE1C LTR MaLR 1 370 -5 19292 176 30 18 chrX 44416505 44420549 -132553591 - L1M1 LINE L1 -743 6822 2825 4461 39 2 0 chrX 44420549 44421090 -132553050 - L1PA4 LINE L1 -1 6154 5613 19292 176 30 18 chrX 44421090 44421727 -132552413 - L1M1 LINE L1 -4740 2825 2197 1693 130 4 4 chrX 44421727 44422023 -132552117 - AluSc SINE Alu 0 329 34 19292 176 30 18 chrX 44422023 44424205 -132549935 - L1M1 LINE L1 -5368 2197 2 1008 206 0 22 chrX 44424175 44424398 -132549742 - L1MA5 LINE L1 -301 7418 7201 * 25 31 0 0 chrX 44424399 44424431 -132549709 + AT_rich Low_complexity Low_complexity 1 32 0 5177 177 46 7 chrX 44424445 44425522 -132548618 - L1MA5 LINE L1 -935 6630 5512 1451 199 0 64 chrX 44425951 44426262 -132547878 - AluJo SINE Alu -21 291 1 198 320 64 0 chrX 44426309 44426387 -132547753 + L3 LINE CR1 1485 1567 -10 209 211 22 133 chrX 44426462 44426552 -132547588 - MIR3 SINE MIR -18 190 111 1586 210 107 107 chrX 44426639 44427258 -132546882 - MLT1E2 LTR MaLR -3 623 3 487 256 71 98 chrX 44427353 44427607 -132546533 + MIR SINE MIR 16 262 0 237 294 62 62 chrX 44427664 44427810 -132546330 + L2 LINE L2 3168 3313 0 2086 92 50 4 chrX 44428370 44428651 -132545489 + AluSx SINE Alu 1 294 -18 1935 141 3 10 chrX 44429284 44429583 -132544557 + AluSx SINE Alu 1 297 -15 600 330 70 18 chrX 44430288 44430573 -132543567 + L2 LINE L2 3014 3313 0 640 259 54 32 chrX 44430885 44431070 -132543070 + MIR SINE MIR 20 208 -54 1897 111 32 11 chrX 44431369 44431648 -132542492 - AluSq SINE Alu -8 305 21 453 283 21 28 chrX 44431778 44431923 -132542217 - MIR SINE MIR 0 262 119 183 333 0 67 chrX 44432790 44432865 -132541275 - L3 LINE CR1 -1050 527 458 737 226 54 10 chrX 44433122 44433326 -132540814 + L1M4 LINE L1 3777 3989 -2157 2206 251 69 0 chrX 44433635 44434301 -132539839 + L1M4 LINE L1 3980 4691 -1455 478 287 27 20 chrX 44434388 44434538 -132539602 - MIR SINE MIR -79 183 33 14580 42 4 2 chrX 44434726 44436545 -132537595 - L1P1 LINE L1 -3215 2931 1109 * 19799 39 1 0 chrX 44436541 44439272 -132534868 + L1P1 LINE L1 2922 5654 -501 431 246 16 0 chrX 44439390 44439512 -132534628 - L1P LINE L1 -883 5263 5140 42148 61 5 1 chrX 44439513 44445639 -132528501 + L1PA7 LINE L1 1 6148 -6 4958 152 18 8 chrX 44445639 44446666 -132527474 + L1PA15 LINE L1 5128 6164 -1 248 300 67 48 chrX 44446999 44447432 -132526708 + L1MC/D LINE L1 3718 4158 -1988 486 317 51 48 chrX 44447439 44447732 -132526408 + L1MC/D LINE L1 4298 4591 -1555 299 281 103 27 chrX 44447743 44448032 -132526108 + L1MC/D LINE L1 5488 5801 -531 7960 181 41 8 chrX 44448190 44449668 -132524472 + L1PA15-16 LINE L1 331 1856 -4993 6745 82 9 12 chrX 44449671 44450678 -132523462 + L1P LINE L1 7 1010 -5136 7323 44 0 0 chrX 44450778 44452251 -132521889 + L1PA3 LINE L1 4683 6155 0 4429 166 19 0 chrX 44452252 44453071 -132521069 + L1P LINE L1 4067 4901 -1245 563 168 20 34 chrX 44453075 44453224 -132520916 + L1PA15-16 LINE L1 2768 2914 -3935 34778 102 6 6 chrX 44453241 44459388 -132514752 + L1PA6 LINE L1 14 6154 0 3698 199 22 5 chrX 44459386 44460251 -132513889 + L1PA15-16 LINE L1 2905 3784 -3065 * 1098 283 29 2 chrX 44460234 44460690 -132513450 + L1M4 LINE L1 2562 3029 -3117 * 614 238 31 44 chrX 44460692 44460852 -132513288 + MSTB LTR MaLR 4 161 -265 526 201 90 0 chrX 44460858 44460992 -132513148 + MSTB LTR MaLR 286 431 -1 38209 64 16 0 chrX 44462293 44468342 -132505798 + L1PA3 LINE L1 7 6155 0 11888 45 2 1 chrX 44468338 44470035 -132504105 + L1P2 LINE L1 3832 5530 -625 * 27 0 0 0 chrX 44470037 44470064 -132504076 + AT_rich Low_complexity Low_complexity 1 27 0 4868 49 3 0 chrX 44470179 44470814 -132503326 - L1PA3 LINE L1 -177 5978 5342 3570 98 0 0 chrX 44470822 44471323 -132502817 + L1PA4 LINE L1 7 507 -5639 1788 53 0 0 chrX 44471320 44471565 -132502575 - L1P LINE L1 -795 5351 5107 * 14008 49 2 0 chrX 44471566 44473404 -132500736 + L1P LINE L1 3272 5113 -1033 5076 52 2 2 chrX 44473404 44474032 -132500108 + L1PA4 LINE L1 5520 6152 -3 992 65 0 0 chrX 44475218 44475342 -132498798 - AluY SINE Alu -8 303 180 2228 100 3 7 chrX 44475416 44475716 -132498424 + AluSx SINE Alu 1 299 -13 2493 143 15 34 chrX 44476261 44476423 -132497717 - L1MA5 LINE L1 0 6300 6136 1701 179 0 43 chrX 44476423 44476725 -132497415 - AluJo SINE Alu -12 300 12 2493 143 15 34 chrX 44476725 44477039 -132497101 - L1MA5 LINE L1 -164 6136 5833 1765 228 70 15 chrX 44477226 44477733 -132496407 + L1MDb LINE L1 812 1357 -5049 2376 71 0 0 chrX 44477733 44478028 -132496112 + AluY SINE Alu 1 295 -16 1765 228 70 15 chrX 44478028 44478200 -132495940 + L1MDb LINE L1 1357 1518 -4888 5040 197 10 16 chrX 44478216 44479224 -132494916 + L1PA13 LINE L1 1112 2113 -4674 2164 154 9 5 chrX 44479222 44479824 -132494316 + L1PA13 LINE L1 1930 2543 -4254 * 6359 56 4 1 chrX 44479822 44480664 -132493476 - L1PA5 LINE L1 -3 6151 5308 335 162 0 15 chrX 44480664 44480732 -132493408 + L1PA13 LINE L1 2532 2598 -4199 * 562 220 15 25 chrX 44480721 44480910 -132493230 - L1M4 LINE L1 -975 5171 4983 2345 123 0 29 chrX 44480910 44481284 -132492856 - L1PA8A LINE L1 0 6131 5769 35057 51 4 1 chrX 44481284 44486726 -132487414 - L1PA3 LINE L1 -2 6153 702 36 0 0 0 chrX 44486877 44486913 -132487227 + AT_rich Low_complexity Low_complexity 1 36 0 28858 114 10 29 chrX 44486913 44491183 -132482957 - L1PA7 LINE L1 -7 6147 2020 326 22 0 0 chrX 44491183 44491228 -132482912 - L1PA2 LINE L1 0 6155 6111 28858 114 10 29 chrX 44491228 44492871 -132481269 - L1PA7 LINE L1 -4134 2020 348 2913 241 11 7 chrX 44492876 44493754 -132480386 - L1M4 LINE L1 -2091 4055 3171 180 0 0 0 chrX 44493754 44493774 -132480366 + (TG)n Simple_repeat Simple_repeat 1 20 0 2913 241 11 7 chrX 44493774 44493786 -132480354 - L1M4 LINE L1 -2975 3171 3161 * 4313 192 71 10 chrX 44493775 44495771 -132478369 - L1PBa LINE L1 -4597 2266 6 582 56 67 11 chrX 44495773 44495862 -132478278 - L1PBa LINE L1 -4437 2426 2333 3071 177 28 16 chrX 44495862 44496552 -132477588 - L1PBa LINE L1 -4920 1943 1101 4245 233 53 4 chrX 44496562 44497555 -132476585 - L1PBa LINE L1 -5816 1047 6 7717 167 17 68 chrX 44497572 44499771 -132474369 - L1M1 LINE L1 -690 7034 4960 751 162 0 7 chrX 44499769 44499905 -132474235 - L1M1 LINE L1 -7363 202 68 * 7584 224 27 20 chrX 44499919 44500478 -132473662 - L1M1 LINE L1 -4444 3121 2568 189 0 0 0 chrX 44500478 44500499 -132473641 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 243 0 0 0 chrX 44500498 44500525 -132473615 + (TG)n Simple_repeat Simple_repeat 2 28 0 7584 224 27 20 chrX 44500499 44502361 -132471779 - L1M1 LINE L1 -4997 2568 23 402 373 7 7 chrX 44503023 44503173 -132470967 - MIR SINE MIR -101 161 12 893 296 8 8 chrX 44503322 44503575 -132470565 + MIR SINE MIR 10 262 0 238 191 0 0 chrX 44504204 44504251 -132469889 + L1MA4A LINE L1 6234 6280 -23 1918 156 0 10 chrX 44504258 44504546 -132469594 + AluSq SINE Alu 1 285 -28 28 0 0 0 chrX 44504547 44504575 -132469565 + AT_rich Low_complexity Low_complexity 1 28 0 34981 101 21 9 chrX 44505378 44511437 -132462703 + L1PA6 LINE L1 2 6135 -19 192 77 0 0 chrX 44511437 44511463 -132462677 + (TA)n Simple_repeat Simple_repeat 1 26 0 19047 202 23 50 chrX 44512664 44515589 -132458551 + L1PA12 LINE L1 9 3010 -4574 257 0 30 0 chrX 44515589 44515622 -132458518 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2004 138 3 0 chrX 44515625 44515916 -132458224 - AluSx SINE Alu -20 292 1 19047 202 23 50 chrX 44515916 44518543 -132455597 + L1PA12 LINE L1 3012 6505 -1079 5952 170 66 11 chrX 44518643 44520744 -132453396 + L1PBa LINE L1 1763 3978 -2884 1741 158 3 4 chrX 44520873 44521195 -132452945 + L1M LINE L1 5023 5342 -815 189 261 0 0 chrX 44521198 44521244 -132452896 + L2 LINE L2 3268 3313 0 5468 112 15 11 chrX 44521317 44521476 -132452664 + L1PA11 LINE L1 5328 5485 -689 2751 16 0 0 chrX 44521476 44521781 -132452359 + AluYa5 SINE Alu 1 305 -6 5468 112 15 11 chrX 44521781 44522464 -132451676 + L1PA11 LINE L1 5485 6174 0 465 241 30 38 chrX 44522611 44522744 -132451396 + L2 LINE L2 3182 3313 0 515 294 131 32 chrX 44522954 44523206 -132450934 - L2 LINE L2 -1 3312 3036 627 239 92 14 chrX 44523409 44523666 -132450474 - L1MC4a LINE L1 -336 5842 5566 437 335 68 25 chrX 44523666 44524049 -132450091 + MLT1I LTR MaLR 3 407 -2 304 243 229 21 chrX 44525591 44525731 -132448409 + HAL1 LINE L1 821 989 -1518 1068 304 170 5 chrX 44526060 44526689 -132447451 + HAL1 LINE L1 1192 1924 -583 273 219 0 0 chrX 44526984 44527048 -132447092 + HAL1 LINE L1 2082 2145 -362 286 203 122 49 chrX 44527057 44527180 -132446960 + HAL1 LINE L1 2376 2507 0 886 217 28 0 chrX 44527587 44527767 -132446373 + L1MD2 LINE L1 26 210 -6330 1497 239 76 105 chrX 44527798 44528380 -132445760 + L1MD2 LINE L1 201 765 -5775 2870 262 57 19 chrX 44528385 44529874 -132444266 + L1MD2 LINE L1 3470 5050 -1490 1581 166 146 86 chrX 44529874 44529986 -132444154 + MLT1C LTR MaLR 1 105 -362 1999 142 0 0 chrX 44529986 44530281 -132443859 - AluSx SINE Alu 0 312 18 1581 166 146 86 chrX 44530281 44530409 -132443731 + MLT1C LTR MaLR 105 224 -243 1912 164 118 18 chrX 44530409 44530798 -132443342 - MSTA LTR MaLR 0 428 1 1581 166 146 86 chrX 44530798 44530996 -132443144 + MLT1C LTR MaLR 224 466 -1 3621 218 28 35 chrX 44531043 44531982 -132442158 + L1MD2 LINE L1 5071 5941 -695 2424 71 3 0 chrX 44531982 44532276 -132441864 + AluY SINE Alu 1 295 -16 3621 218 28 35 chrX 44532276 44532967 -132441173 + L1MD2 LINE L1 5941 6636 0 232 349 15 0 chrX 44532990 44533056 -132441084 + L2 LINE L2 3205 3271 -1 249 98 0 0 chrX 44533239 44533280 -132440860 + (CA)n Simple_repeat Simple_repeat 2 42 0 8339 177 50 4 chrX 44533735 44535307 -132438833 + L1PBa LINE L1 10 1654 -5209 1152 260 26 2 chrX 44535427 44535856 -132438284 + L1MD2 LINE L1 4964 5406 -758 2167 158 14 65 chrX 44535858 44536289 -132437851 - MLT2D LTR ERVL 0 414 6 3613 216 68 14 chrX 44536295 44537007 -132437133 + L1MD2 LINE L1 5404 6175 -184 300 53 0 0 chrX 44537007 44537045 -132437095 + (CA)n Simple_repeat Simple_repeat 2 39 0 3613 216 68 14 chrX 44537045 44537230 -132436910 + L1MD2 LINE L1 6175 6349 -10 339 333 0 0 chrX 44537237 44537324 -132436816 - MER5A DNA MER1_type -54 135 49 207 0 0 0 chrX 44537326 44537349 -132436791 + (CTG)n Simple_repeat Simple_repeat 1 23 0 383 335 62 6 chrX 44537487 44537666 -132436474 - MIR SINE MIR -21 241 53 355 296 132 26 chrX 44537765 44537917 -132436223 - MIR SINE MIR -18 244 77 * 474 300 15 0 chrX 44537905 44538035 -132436105 + L2 LINE L2 3182 3313 0 199 268 0 0 chrX 44538034 44538075 -132436065 - MIR SINE MIR -221 41 1 * 5167 179 38 12 chrX 44538934 44540930 -132433210 - L1MA4 LINE L1 -9 7710 5666 1569 193 24 17 chrX 44540942 44541442 -132432698 - L1MA4 LINE L1 -3650 3915 3411 3347 139 17 7 chrX 44541461 44542049 -132432091 - L1MA3 LINE L1 -1 6304 5711 1161 124 5 11 chrX 44542074 44542259 -132431881 - L1PB1 LINE L1 -3 6148 5965 24109 39 6 0 chrX 44742273 44746029 -132228111 + L1PA3 LINE L1 2373 6152 -3 3762 80 4 9 chrX 44746041 44746569 -132227571 + L1PA8 LINE L1 5641 6165 -7 401 362 85 30 chrX 44746738 44747009 -132227131 + HAL1b LINE L1 339 624 -724 193 109 43 0 chrX 44747061 44747107 -132227033 + (TA)n Simple_repeat Simple_repeat 2 49 0 1883 114 21 0 chrX 44747168 44747457 -132226683 - L1PA13 LINE L1 -2 6161 5867 484 115 81 0 chrX 44747460 44747547 -132226593 - L1PA13 LINE L1 -421 5747 5654 1107 126 0 0 chrX 44747566 44747776 -132226364 + (TA)n Simple_repeat Simple_repeat 1 210 0 7191 234 38 18 chrX 44747776 44749157 -132224983 - L1 LINE L1 -1818 4510 3157 10010 34 0 0 chrX 44749157 44751126 -132223014 - L1PA3 LINE L1 0 6155 4184 7191 234 38 18 chrX 44751126 44751861 -132222279 - L1 LINE L1 -3171 3157 2350 2335 145 11 3 chrX 44751861 44752240 -132221900 - L1PA11 LINE L1 -2 6172 5791 11017 169 19 10 chrX 44752249 44752665 -132221475 - L1PA11 LINE L1 -743 5403 4992 2280 98 0 13 chrX 44752665 44752980 -132221160 - AluY SINE Alu 0 311 1 11017 169 19 10 chrX 44752980 44754706 -132219434 - L1PA11 LINE L1 -1154 4992 3243 1916 181 56 5 chrX 44754689 44755081 -132219059 - L1 LINE L1 -4325 1003 592 * 2093 200 13 40 chrX 44755082 44755531 -132218609 - L1 LINE L1 -4853 475 39 316 230 22 4 chrX 44755524 44755623 -132218517 + L1ME2 LINE L1 5882 5972 -192 * 1152 223 12 0 chrX 44756056 44756303 -132217837 + L1PB4 LINE L1 5903 6152 -4 24 32 0 0 chrX 44756496 44756527 -132217613 + AT_rich Low_complexity Low_complexity 1 31 0 14850 66 2 1 chrX 44756847 44762857 -132211283 - L1PA4 LINE L1 -1 6154 38 1554 321 60 17 chrX 44763226 44763914 -132210226 + L2 LINE L2 1989 2705 -609 330 304 39 61 chrX 44764253 44764434 -132209706 + L2 LINE L2 2317 2493 -821 376 296 91 23 chrX 44764532 44764708 -132209432 - MER5A DNA MER1_type 0 189 2 181 367 102 31 chrX 44764804 44765030 -132209110 - L2 LINE L2 -803 2511 2270 2540 72 0 0 chrX 44765345 44765652 -132208488 - AluY SINE Alu 0 311 5 2313 202 78 64 chrX 44765866 44766589 -132207551 - MER31-int LTR ERV1 -1193 3743 3011 24 0 0 0 chrX 44766589 44766613 -132207527 + AT_rich Low_complexity Low_complexity 1 24 0 2133 200 24 4 chrX 44766655 44767115 -132207025 - L1MA8 LINE L1 -5 7246 6778 12351 184 75 41 chrX 44767128 44768491 -132205649 + L1M1 LINE L1 12 1327 -6238 2169 142 0 0 chrX 44768491 44768801 -132205339 + AluSg SINE Alu 1 310 0 12351 184 75 41 chrX 44768801 44769993 -132204147 + L1M1 LINE L1 1327 2654 -4911 611 184 31 49 chrX 44770061 44770224 -132203916 + L1M2 LINE L1 5319 5478 -813 * 4019 207 129 43 chrX 44770222 44771463 -132202677 - L1MA8 LINE L1 -830 6276 4929 503 256 78 36 chrX 44771432 44771741 -132202399 - L1MA8 LINE L1 -2438 4668 4347 * 2423 277 23 102 chrX 44771746 44773271 -132200869 - L1MA8 LINE L1 -5620 1410 7 1500 241 24 76 chrX 44773299 44773389 -132200751 - L1 LINE L1 -748 5398 5305 306 50 0 0 chrX 44773389 44773429 -132200711 + (TG)n Simple_repeat Simple_repeat 1 40 0 1500 241 24 76 chrX 44773429 44773919 -132200221 - L1 LINE L1 -841 5305 4848 3749 223 26 16 chrX 44773926 44774584 -132199556 + L1MA9 LINE L1 3357 4030 -2116 1717 183 131 11 chrX 44774584 44774966 -132199174 + MSTA LTR MaLR 1 428 0 3749 223 26 16 chrX 44774966 44775267 -132198873 + L1MA9 LINE L1 4030 4326 -1820 346 176 0 14 chrX 44775293 44775367 -132198773 + L1M LINE L1 5306 5378 -925 31113 110 12 14 chrX 44775380 44781639 -132192501 + L1PA7 LINE L1 12 6151 -3 3550 174 41 20 chrX 44781651 44782404 -132191736 + L1PB4 LINE L1 5387 6155 -1 1094 212 30 7 chrX 44782436 44782738 -132191402 + L1MA9 LINE L1 4372 4680 -1466 18032 198 24 20 chrX 44782747 44787353 -132186787 + L1MA2 LINE L1 20 4645 -2920 280 170 0 0 chrX 44787365 44787412 -132186728 - MLT1E3 LTR MaLR -577 47 1 9347 187 30 4 chrX 44787491 44790488 -132183652 + L1MA2 LINE L1 4637 7707 -16 3873 213 48 28 chrX 44790519 44791814 -132182326 + L1MA9 LINE L1 4675 5943 -369 2151 127 0 7 chrX 44791814 44792121 -132182019 + AluSx SINE Alu 3 307 -5 3873 213 48 28 chrX 44792121 44792256 -132181884 + L1MA9 LINE L1 5943 6074 -238 339 78 0 0 chrX 44792256 44792307 -132181833 + (CA)n Simple_repeat Simple_repeat 1 51 0 3873 213 48 28 chrX 44792307 44792442 -132181698 + L1MA9 LINE L1 6074 6274 -38 419 161 35 0 chrX 44792486 44792573 -132181567 + L1MA9 LINE L1 6223 6312 0 21 36 0 0 chrX 44792721 44792749 -132181391 + AT_rich Low_complexity Low_complexity 1 28 0 2532 99 5 29 chrX 44793120 44793503 -132180637 - THE1C LTR MaLR -1 374 1 334 75 0 19 chrX 44793503 44793556 -132180584 - THE1C-int LTR MaLR 0 1580 1529 347 160 0 0 chrX 44794003 44794053 -132180087 - 5S rRNA rRNA -71 50 1 1360 191 0 4 chrX 44794055 44794311 -132179829 + MLT2C2 LTR ERVL 3 257 -207 3244 201 15 99 chrX 44794311 44795165 -132178975 + MLT1A1-int LTR MaLR 954 1735 0 1139 207 50 92 chrX 44795165 44795546 -132178594 + MLT1A1 LTR MaLR 1 365 0 366 249 87 53 chrX 44795592 44795857 -132178283 + HAL1 LINE L1 1757 2030 -477 1933 176 0 3 chrX 44795929 44796242 -132177898 - AluSx SINE Alu 0 312 1 1159 241 5 81 chrX 44796369 44796764 -132177376 + MLT1A1 LTR MaLR 1 365 0 438 290 55 7 chrX 44796832 44796977 -132177163 - MIR SINE MIR -11 251 100 305 274 38 70 chrX 44797043 44797200 -132176940 + HAL1 LINE L1 2333 2484 -23 25 51 0 0 chrX 44797204 44797243 -132176897 + AT_rich Low_complexity Low_complexity 1 39 0 22 70 0 0 chrX 44798867 44798910 -132175230 + AT_rich Low_complexity Low_complexity 1 43 0 577 280 45 34 chrX 44799063 44799331 -132174809 + HAL1 LINE L1 1790 2060 -447 582 238 18 24 chrX 44799385 44799549 -132174591 - LTR52 LTR ERVL -258 163 1 583 252 0 0 chrX 44799549 44799672 -132174468 - LTR52-int LTR ERVL 0 3556 3434 * 629 231 0 0 chrX 44799664 44799781 -132174359 - LTR52-int LTR ERVL -52 3504 3388 38 0 0 0 chrX 44799849 44799887 -132174253 + AT_rich Low_complexity Low_complexity 1 38 0 1222 186 9 0 chrX 44799887 44800118 -132174022 - L1PB3 LINE L1 -5 6149 5917 2290 162 0 25 chrX 44800137 44800532 -132173608 + MER57B LTR ERV1 46 430 -4 650 261 27 42 chrX 44800552 44800815 -132173325 + MER57B-int LTR ERV1 3 299 -7238 9579 62 5 0 chrX 44800850 44802865 -132171275 - L1PA6 LINE L1 -3 6151 4132 279 200 64 91 chrX 44802921 44803031 -132171109 + MER57B-int LTR ERV1 813 919 -867 389 314 11 25 chrX 44804894 44805219 -132168921 + MER57-int LTR ERV1 158 3478 -4278 279 388 26 7 chrX 44805203 44805355 -132168785 + MER57-int LTR ERV1 2544 2698 -4103 * 311 351 0 0 chrX 44806447 44806541 -132167599 + MER57-int LTR ERV1 3784 3877 -2924 1735 238 2 53 chrX 44806635 44807126 -132167014 + MER57-int LTR ERV1 5285 5750 -1787 1021 274 43 63 chrX 44807097 44807988 -132166152 + MER57-int LTR ERV1 2097 6176 -1361 * 22 0 0 0 chrX 44808325 44808347 -132165793 + AT_rich Low_complexity Low_complexity 1 22 0 6916 68 12 2 chrX 44809194 44810795 -132163345 - L1PA6 LINE L1 0 6154 4548 2423 154 19 42 chrX 44811031 44811630 -132162510 - MER4E LTR ERV1 -9 757 1 12469 132 50 14 chrX 44811630 44813699 -132160441 - MER4E-int LTR ERV1 0 6758 4616 1935 178 11 0 chrX 44813700 44814049 -132160091 - MER4E-int LTR ERV1 -2982 3776 3424 * 3128 136 63 68 chrX 44814021 44814425 -132159715 - MER4E-int LTR ERV1 -3649 3109 2709 1869 132 21 3 chrX 44814425 44814714 -132159426 + AluSq SINE Alu 4 297 -16 3128 136 63 68 chrX 44814714 44815024 -132159116 - MER4E-int LTR ERV1 -4049 2709 2399 2494 88 0 0 chrX 44815026 44815367 -132158773 + L1PA7 LINE L1 3854 4194 -1952 382 59 0 0 chrX 44815364 44815415 -132158725 - L1PA6 LINE L1 -1064 5082 5032 * 6951 59 7 0 chrX 44815417 44816468 -132157672 + L1PA6 LINE L1 5086 6141 -13 420 105 0 0 chrX 44816523 44816580 -132157560 + L1PA8A LINE L1 6062 6118 -13 8565 90 38 0 chrX 44816586 44818523 -132155617 + L1PA7 LINE L1 4181 6151 -3 566 64 36 45 chrX 44818523 44818626 -132155514 - MER4B-int LTR ERV1 -4373 2385 2282 1952 162 0 10 chrX 44818626 44818935 -132155205 - AluSx SINE Alu -6 306 1 7320 161 23 7 chrX 44818935 44821314 -132152826 + L1MA2 LINE L1 3890 6304 0 270 278 35 52 chrX 44821352 44821525 -132152615 + HAL1 LINE L1 2212 2381 -126 582 152 0 10 chrX 44821723 44821822 -132152318 + MER4A LTR ERV1 1 98 -566 1754 140 21 20 chrX 44821831 44822167 -132151973 + MER4A LTR ERV1 270 664 0 341 287 10 30 chrX 44822258 44822359 -132151781 - L2 LINE L2 -272 3041 2943 321 325 50 19 chrX 44822405 44822565 -132151575 + MIR SINE MIR 8 172 -90 603 153 22 38 chrX 44823016 44823160 -132150980 + MER51C LTR ERV1 1 183 -457 4277 129 8 0 chrX 44823168 44823803 -132150337 + MER51C LTR ERV1 1 640 0 21 57 0 0 chrX 44823917 44823952 -132150188 + AT_rich Low_complexity Low_complexity 1 35 0 4308 234 36 5 chrX 44824714 44825646 -132148494 - MLT1A1-int LTR MaLR -774 961 1 1647 238 29 0 chrX 44825653 44825998 -132148142 - MLT1A1 LTR MaLR -8 357 3 3027 239 74 37 chrX 44827048 44827696 -132146444 - L1MB4 LINE L1 0 6180 5558 2366 80 0 6 chrX 44827696 44828009 -132146131 - AluY SINE Alu 0 311 1 3027 239 74 37 chrX 44828009 44828856 -132145284 - L1MB4 LINE L1 -622 5558 4744 2489 68 0 0 chrX 44828856 44829152 -132144988 - AluY SINE Alu -15 296 1 3027 239 74 37 chrX 44829152 44829304 -132144836 - L1MB4 LINE L1 -1436 4744 4599 1278 246 21 21 chrX 44829304 44829593 -132144547 + AluJb SINE Alu 1 289 -23 3027 239 74 37 chrX 44829593 44829649 -132144491 - L1MB4 LINE L1 -1581 4599 4409 3203 244 25 31 chrX 44829667 44830047 -132144093 + L1 LINE L1 1609 1989 -4157 2074 133 3 0 chrX 44830047 44830333 -132143807 + AluSx SINE Alu 9 295 -17 3203 244 25 31 chrX 44830333 44831509 -132142631 + L1 LINE L1 1989 3147 -2999 5775 16 8 0 chrX 44831511 44832221 -132141919 + L1PA4 LINE L1 5477 6191 0 3109 205 30 30 chrX 44832388 44833456 -132140684 + L1 LINE L1 3152 4958 -1188 519 122 89 0 chrX 44833459 44833549 -132140591 + MER4A LTR ERV1 1 98 -566 444 155 27 142 chrX 44833549 44833736 -132140404 + MER4A LTR ERV1 261 484 -180 2615 104 3 0 chrX 44833736 44834090 -132140050 + THE1A LTR MaLR 1 355 0 6548 116 17 0 chrX 44834090 44835038 -132139102 + THE1A-int LTR MaLR 1 964 -616 2358 183 52 35 chrX 44835038 44835636 -132138504 - MER4B LTR ERV1 0 779 3 725 102 8 8 chrX 44835636 44835754 -132138386 - L1PA14 LINE L1 -326 5835 5718 * 1280 166 20 4 chrX 44835749 44835996 -132138144 + L1PA14 LINE L1 5455 5705 -451 239 179 0 0 chrX 44835998 44836037 -132138103 - LTR9B LTR ERV1 0 644 606 2334 108 61 0 chrX 44836051 44836413 -132137727 - L1PA5 LINE L1 -1 6153 5770 32105 47 4 0 chrX 44836413 44841924 -132132216 - L1PA4 LINE L1 -2 6153 623 741 102 0 0 chrX 44841922 44842020 -132132120 - L1PA4 LINE L1 -6048 98 1 * 36921 96 6 31 chrX 44842022 44847945 -132126195 - L1PA5 LINE L1 -374 5780 15 2568 216 68 7 chrX 44847946 44848524 -132125616 - LTR9B LTR ERV1 -25 619 7 1176 195 28 22 chrX 44848532 44848791 -132125349 - HUERS-P3 LTR ERV1 -3 8915 6828 618 223 52 12 chrX 44849075 44849265 -132124875 - HUERS-P3 LTR ERV1 -2453 2562 2384 536 200 0 9 chrX 44849260 44849370 -132124770 - HUERS-P3 LTR ERV1 -1937 6982 6874 * 4105 188 18 7 chrX 44849381 44850124 -132124016 - HUERS-P3 LTR ERV1 -2007 6912 6162 * 4276 129 5 2 chrX 44850109 44850715 -132123425 - HUERS-P3 LTR ERV1 -3342 5577 4970 705 252 7 0 chrX 44850756 44850899 -132123241 - HUERS-P3 LTR ERV1 -4237 4682 4539 * 9858 156 3 4 chrX 44850892 44852387 -132121753 - HUERS-P3 LTR ERV1 -5635 3284 1791 4376 152 58 88 chrX 44852384 44853323 -132120817 - HUERS-P3 LTR ERV1 -7267 1652 743 * 1772 222 29 43 chrX 44853343 44853789 -132120351 - HUERS-P3 LTR ERV1 -6859 559 120 207 0 0 0 chrX 44853789 44853812 -132120328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 497 166 74 24 chrX 44853890 44854019 -132120121 - HUERS-P3 LTR ERV1 -6863 133 1 2911 193 68 7 chrX 44854019 44854620 -132119520 - LTR9B LTR ERV1 0 644 7 1636 217 41 36 chrX 44854627 44855070 -132119070 + L1PB4 LINE L1 5705 6149 -7 23 54 0 0 chrX 44855080 44855117 -132119023 + AT_rich Low_complexity Low_complexity 1 37 0 848 185 19 19 chrX 44855126 44855283 -132118857 + MLT1A1 LTR MaLR 208 364 -1 23657 50 4 1 chrX 44855326 44858931 -132115209 - L1PA5 LINE L1 0 6154 2543 4948 62 0 11 chrX 44858931 44859557 -132114583 + L1P LINE L1 184 802 -5344 210 71 0 0 chrX 44859570 44859598 -132114542 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1720 188 3 11 chrX 44859601 44859888 -132114252 - AluSx SINE Alu -27 285 1 438 154 99 11 chrX 44859888 44859979 -132114161 + Ricksha DNA DNA 3128 3226 -20 518 132 0 0 chrX 44859999 44860075 -132114065 + L1MA10 LINE L1 5710 5785 -383 1512 197 0 67 chrX 44860081 44860457 -132113683 + MER46B DNA MER2_type 11 236 0 288 0 0 0 chrX 44860460 44860492 -132113648 + (CA)n Simple_repeat Simple_repeat 2 33 0 280 263 50 0 chrX 44860492 44860572 -132113568 - L1MC4 LINE L1 -1339 6703 6620 * 302 259 49 0 chrX 44860504 44860585 -132113555 + L1MC4 LINE L1 6614 6698 -1344 * 2030 216 32 50 chrX 44860574 44861138 -132113002 + L1MA10 LINE L1 5781 6334 0 21 57 0 0 chrX 44861492 44861527 -132112613 + AT_rich Low_complexity Low_complexity 1 35 0 857 182 85 116 chrX 44862210 44862528 -132111612 - LTR1B LTR ERV1 -384 442 135 28 29 0 0 chrX 44862804 44862839 -132111301 + AT_rich Low_complexity Low_complexity 1 35 0 3412 36 3 0 chrX 44863113 44863500 -132110640 - L1PA4 LINE L1 0 6155 5768 * 6900 79 19 0 chrX 44863494 44864808 -132109332 + L1PA6 LINE L1 4822 6154 0 692 189 8 0 chrX 44865065 44865197 -132108943 + LTR1 LTR ERV1 1 133 -652 4089 19 2 2 chrX 44865197 44865670 -132108470 - L1P2 LINE L1 -401 5754 5282 15629 111 12 10 chrX 44865674 44867916 -132106224 - HERV9 LTR ERV1 -6114 2285 40 760 106 0 0 chrX 44867926 44868030 -132106110 - LTR12 LTR ERV1 -130 584 481 301 256 11 0 chrX 44868031 44868121 -132106019 - LTR30 LTR ERV1 -79 643 553 1829 144 7 7 chrX 44868122 44868407 -132105733 - LTR12 LTR ERV1 -429 285 1 3573 250 32 17 chrX 44868407 44869925 -132104215 + L1M3f LINE L1 542 2085 -4074 5728 148 38 0 chrX 44869954 44870966 -132103174 - L1PA15 LINE L1 -7 7577 6535 237 65 0 0 chrX 44870966 44870997 -132103143 + (TTA)n Simple_repeat Simple_repeat 3 33 0 5728 148 38 0 chrX 44870997 44871129 -132103011 - L1PA15 LINE L1 -1049 6535 6409 2031 158 26 20 chrX 44871129 44871645 -132102495 + MLT2A2 LTR ERVL 6 554 0 813 194 88 19 chrX 44871647 44871863 -132102277 - L1PA15 LINE L1 -1149 6416 6186 6929 125 31 9 chrX 44871913 44871981 -132102159 - L1PA15 LINE L1 -3984 3581 3516 303 28 0 0 chrX 44871981 44872017 -132102123 + (TG)n Simple_repeat Simple_repeat 2 37 0 6929 125 31 9 chrX 44872017 44873155 -132100985 - L1PA15 LINE L1 -4049 3516 2348 30169 128 12 61 chrX 44873162 44879277 -132094863 + L1P3 LINE L1 12 5819 -335 549 280 8 0 chrX 44879264 44879396 -132094744 + L1M1 LINE L1 1427 1559 -6006 * 2602 62 9 3 chrX 44879413 44879733 -132094407 + L1PA7 LINE L1 5829 6150 -4 11308 202 37 17 chrX 44879733 44882031 -132092109 - L1M1 LINE L1 -5209 2356 12 9358 239 29 32 chrX 44882021 44882581 -132091559 - L1PA13 LINE L1 -3752 3045 2485 * 6388 22 0 0 chrX 44882581 44883275 -132090865 + L1PA2 LINE L1 5461 6154 -1 9358 239 29 32 chrX 44883275 44885686 -132088454 - L1PA13 LINE L1 -4312 2485 96 349 187 77 0 chrX 44885689 44885780 -132088360 + L1M1 LINE L1 3344 3441 -4124 2933 210 19 16 chrX 44885781 44886224 -132087916 + L1 LINE L1 4073 4520 -1626 2216 128 0 0 chrX 44886224 44886528 -132087612 + AluSg SINE Alu 1 304 -6 2933 210 19 16 chrX 44886528 44886755 -132087385 + L1 LINE L1 4520 4745 -1401 29639 114 11 10 chrX 44886757 44891011 -132083129 + L1PA7 LINE L1 702 4987 -1482 270 0 0 0 chrX 44891011 44891041 -132083099 + (CA)n Simple_repeat Simple_repeat 1 30 0 29639 114 11 10 chrX 44891041 44892519 -132081621 + L1PA7 LINE L1 4987 6463 -6 4782 180 36 12 chrX 44892520 44892843 -132081297 + L1PA16 LINE L1 4737 5051 -1115 2224 40 0 0 chrX 44892843 44893094 -132081046 + L1PA4 LINE L1 5901 6151 -4 4782 180 36 12 chrX 44893094 44894158 -132079982 + L1PA16 LINE L1 5051 6155 -11 1228 183 44 44 chrX 44894162 44894566 -132079574 + L1M1 LINE L1 3466 3869 -3696 19481 97 16 2 chrX 44894570 44897251 -132076889 + L1P LINE L1 3 2720 -3426 7071 167 17 10 chrX 44897360 44898698 -132075442 - L1 LINE L1 -909 5237 3890 1964 162 0 10 chrX 44898698 44899007 -132075133 + AluSx SINE Alu 1 306 -6 582 70 40 30 chrX 44899007 44899107 -132075033 + MER4B-int LTR ERV1 2282 2382 -4376 30108 115 14 9 chrX 44899107 44900561 -132073579 - L1PA7 LINE L1 0 6469 5024 270 0 0 0 chrX 44900561 44900591 -132073549 + (TG)n Simple_repeat Simple_repeat 1 30 0 30108 115 14 9 chrX 44900591 44904845 -132069295 - L1PA7 LINE L1 -1445 5024 702 2933 210 19 16 chrX 44904847 44905074 -132069066 - L1 LINE L1 -1401 6164 5939 2216 128 0 0 chrX 44905074 44905378 -132068762 - AluSg SINE Alu -6 304 1 2933 210 19 16 chrX 44905378 44905821 -132068319 - L1 LINE L1 -1626 5939 5492 349 187 77 0 chrX 44905822 44905913 -132068227 - L1 LINE L1 -4124 3441 3344 9358 239 26 38 chrX 44905916 44908327 -132065813 + L1PA13 LINE L1 96 2491 -4306 1350 52 11 11 chrX 44908327 44908501 -132065639 - L1PA2 LINE L1 -1 6154 5981 17645 58 1 1 chrX 44908606 44911501 -132062639 + L1PA5 LINE L1 3258 6154 0 3068 195 60 8 chrX 44911503 44912369 -132061771 - L1P LINE L1 -795 6789 5803 * 6362 228 25 19 chrX 44912365 44915021 -132059119 - L1PA12 LINE L1 -4360 3224 1 4578 262 30 9 chrX 44915022 44916442 -132057698 + L1 LINE L1 3035 4483 -1663 954 215 8 16 chrX 44916546 44916792 -132057348 + L1P LINE L1 5032 5275 -871 3090 296 33 16 chrX 44916803 44917957 -132056183 + L1PBa LINE L1 3 1175 -5688 3257 116 5 0 chrX 44917959 44918406 -132055734 + HERVK22 LTR ERVK 4869 5317 -1520 2643 108 15 18 chrX 44918406 44918795 -132055345 + LTR15 LTR ERV1 1 388 -105 1216 89 0 0 chrX 44918918 44919075 -132055065 + HERVK22 LTR ERVK 5314 5470 -1367 * 6805 116 11 10 chrX 44919074 44920044 -132054096 + HERVK22 LTR ERVK 5859 6829 -8 649 210 5 37 chrX 44920044 44920056 -132054084 + L1MA4 LINE L1 5539 5550 -616 2777 164 29 31 chrX 44920056 44920545 -132053595 + LTR22B LTR ERVK 5 492 0 649 210 5 37 chrX 44920545 44920683 -132053457 + L1MA4 LINE L1 5550 5680 -486 5005 179 42 7 chrX 44920683 44922353 -132051787 + L1PA16 LINE L1 4438 6164 -2 2975 170 48 10 chrX 44922356 44922955 -132051185 + L1MA4 LINE L1 5677 6298 -2 732 137 15 23 chrX 44923103 44923234 -132050906 + L1MA4 LINE L1 6165 6294 -6 5519 277 105 29 chrX 44923237 44925483 -132048657 + L1M2 LINE L1 7 2423 -4426 2166 191 76 2 chrX 44925483 44925880 -132048260 - MSTB LTR MaLR 0 426 1 8754 180 52 9 chrX 44925881 44927462 -132046678 - MSTB-int LTR MaLR -1 1650 1 2377 177 49 2 chrX 44927462 44927869 -132046271 - MSTB LTR MaLR 0 426 1 7033 225 42 20 chrX 44927869 44929461 -132044679 + L1M2 LINE L1 2419 3974 -2874 2041 150 56 19 chrX 44929461 44929820 -132044320 - THE1C LTR MaLR 0 375 4 10447 107 41 60 chrX 44929823 44931432 -132042708 - THE1C-int LTR MaLR 0 1580 2 2525 102 30 21 chrX 44931433 44931805 -132042335 - THE1C LTR MaLR 0 375 1 7033 225 42 20 chrX 44931805 44932675 -132041465 + L1M2 LINE L1 3974 4947 -1901 1292 308 37 14 chrX 44932685 44933113 -132041027 + L1M2 LINE L1 11 448 -6401 333 293 64 76 chrX 44933188 44933345 -132040795 + L1M2 LINE L1 646 800 -6049 10627 225 36 22 chrX 44933966 44936739 -132037401 + L1M2 LINE L1 1067 3919 -2929 243 0 0 0 chrX 44936739 44936766 -132037374 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10627 225 36 22 chrX 44936766 44938386 -132035754 + L1M2 LINE L1 3919 5516 -1332 893 223 10 11 chrX 44938496 44940154 -132033986 + ALR/Alpha Satellite centromeric 1 1659 -7238 1960 136 11 0 chrX 44940154 44940440 -132033700 - AluSc SINE Alu -20 289 1 893 223 10 11 chrX 44940440 44940875 -132033265 + ALR/Alpha Satellite centromeric 1659 2093 -6804 207 0 0 0 chrX 44940875 44940898 -132033242 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 893 223 10 11 chrX 44940898 44945515 -132028625 + ALR/Alpha Satellite centromeric 2093 7993 -904 5052 161 24 40 chrX 44945515 44946499 -132027641 + LTR5 LTR ERVK 1 969 0 893 223 10 11 chrX 44946499 44947351 -132026789 + ALR/Alpha Satellite centromeric 7993 8844 -53 5342 94 36 4 chrX 44947365 44948148 -132025992 - L1PA7 LINE L1 -1 6153 5346 752 230 27 6 chrX 44948158 44948971 -132025169 + ALR/Alpha Satellite centromeric 1 829 -8 822 228 4 1 chrX 44949011 44950301 -132023839 + ALR/Alpha Satellite centromeric 1 1293 -11 2957 183 3 14 chrX 44950301 44951302 -132022838 + L1MA2 LINE L1 4774 5764 -540 * 4773 164 17 18 chrX 44951300 44951379 -132022761 + L1PB3 LINE L1 5259 5337 -817 5797 121 4 15 chrX 44951379 44952344 -132021796 + L1PA13 LINE L1 4854 5816 -347 1603 96 0 0 chrX 44952344 44952598 -132021542 + AluY SINE Alu 84 337 0 5797 121 4 15 chrX 44952598 44952938 -132021202 + L1PA13 LINE L1 5816 6158 -5 4773 164 17 18 chrX 44952938 44953753 -132020387 + L1PB3 LINE L1 5337 6152 -2 2523 152 7 75 chrX 44953758 44954329 -132019811 + L1MA2 LINE L1 5773 6304 0 643 262 35 0 chrX 44954361 44954506 -132019634 - MLT1A1 LTR MaLR -215 150 1 2079 219 51 50 chrX 44954506 44955836 -132018304 + L1MA10 LINE L1 4843 6316 -18 438 217 0 33 chrX 44955842 44955934 -132018206 - AluY SINE Alu -24 287 199 436 310 48 55 chrX 44955990 44956186 -132017954 - L1M2 LINE L1 -5793 1792 1597 3093 135 22 6 chrX 44956186 44956689 -132017451 - MER9 LTR ERVK 0 511 1 436 310 48 55 chrX 44956689 44956763 -132017377 - L1M2 LINE L1 -5988 1597 1524 1035 320 43 38 chrX 44957762 44958340 -132015800 - L1M2 LINE L1 -6440 1145 5 321 277 92 7 chrX 44958342 44958483 -132015657 - L1MCa LINE L1 -4222 2204 2052 183 355 106 28 chrX 44958505 44958787 -132015353 - L2 LINE L2 -1167 2147 1844 742 245 0 13 chrX 44958828 44958983 -132015157 - FRAM SINE Alu -15 161 9 2512 98 4 179 chrX 44959279 44959828 -132014312 - MLT2A2 LTR ERVL 0 453 1 2279 153 15 0 chrX 44959828 44960219 -132013921 - HERVL-A2 LTR ERVL 0 5654 5258 * 19853 130 16 6 chrX 44960216 44962119 -132012021 - HERVL-A2 LTR ERVL -2444 3210 1264 2512 127 0 11 chrX 44962119 44962498 -132011642 + THE1C LTR MaLR 1 375 0 19853 130 16 6 chrX 44962498 44963590 -132010550 - HERVL-A2 LTR ERVL -4390 1264 185 3225 144 67 25 chrX 44963591 44964667 -132009473 - MER11A LTR ERVK -4 1232 1 1135 147 0 0 chrX 44964667 44964858 -132009282 - HERVL-A2 LTR ERVL -5461 193 3 234 118 20 59 chrX 44964865 44964916 -132009224 - MLT2A2 LTR ERVL -8 512 464 443 90 89 17 chrX 44964916 44965631 -132008509 + (TA)n Simple_repeat Simple_repeat 1 766 0 384 108 92 14 chrX 44965671 44966173 -132007967 + (TA)n Simple_repeat Simple_repeat 1 541 0 293 130 99 0 chrX 44966233 44966395 -132007745 + (TA)n Simple_repeat Simple_repeat 1 178 0 1815 196 33 22 chrX 44966395 44966898 -132007242 - MLT2A2 LTR ERVL -44 500 1 217 294 98 42 chrX 44966899 44967042 -132007098 - MIR SINE MIR -5 257 107 257 329 84 62 chrX 44967044 44967400 -132006740 - L2 LINE L2 -1842 1472 1109 244 345 30 20 chrX 44967378 44967581 -132006559 + L2 LINE L2 628 832 -2482 * 206 154 26 0 chrX 44967706 44967745 -132006395 + CT-rich Low_complexity Low_complexity 1 40 0 5153 209 11 19 chrX 44967749 44968790 -132005350 + MSTA-int LTR MaLR 549 1580 0 1739 176 145 18 chrX 44968790 44969170 -132004970 + MSTA LTR MaLR 1 428 0 7600 245 53 12 chrX 44969170 44971558 -132002582 - L1PA13 LINE L1 -3688 3109 604 796 220 183 0 chrX 44971554 44971745 -132002395 - L1PA13 LINE L1 -6561 226 1 * 577 296 70 15 chrX 44971855 44972375 -132001765 - L1MCa LINE L1 -4486 1986 1296 1086 200 39 8 chrX 44972378 44972638 -132001502 - L1MB1 LINE L1 -4 6164 5897 866 191 0 25 chrX 44972638 44972795 -132001345 - MSTC LTR MaLR -6 422 270 2595 282 68 51 chrX 44972802 44973883 -132000257 - MSTC-int LTR MaLR -634 1101 2 2056 178 28 39 chrX 44973884 44974316 -131999824 - MSTC LTR MaLR 0 428 2 2754 246 53 18 chrX 44974333 44975837 -131998303 - L1MB1 LINE L1 -320 5848 4290 277 229 33 0 chrX 44975854 44975915 -131998225 + L1PA12 LINE L1 11 73 -7508 3837 263 33 75 chrX 44975924 44978132 -131996008 + L1PA12 LINE L1 1133 3260 -4324 6026 101 17 2 chrX 44978137 44979120 -131995020 + L1PA10 LINE L1 5153 6149 -19 236 29 0 29 chrX 44979120 44979154 -131994986 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 4239 296 85 67 chrX 44979163 44981552 -131992588 + L1PA12 LINE L1 54 2485 -5096 11461 239 26 25 chrX 44981564 44984839 -131989301 + L1PA12 LINE L1 2908 6186 -1398 712 276 67 50 chrX 44984844 44985265 -131988875 - L1MCb LINE L1 -5012 1410 983 233 293 100 64 chrX 44985618 44985867 -131988273 - L1MCb LINE L1 -5967 456 199 1762 251 78 14 chrX 44985932 44986429 -131987711 + LTR68 LTR ERV1 3 531 -209 3271 239 28 30 chrX 44986678 44988150 -131985990 - L1MB3 LINE L1 -8 6175 4696 14410 231 29 41 chrX 44988228 44990888 -131983252 - L1PA14 LINE L1 -6 7732 5040 273 57 0 0 chrX 44990888 44990923 -131983217 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 14410 231 29 41 chrX 44990923 44993228 -131980912 - L1PA14 LINE L1 -2698 5040 2707 739 85 0 0 chrX 44993228 44993334 -131980806 - AluY SINE Alu -5 306 201 14410 231 29 41 chrX 44993334 44996653 -131977487 - L1PA14 LINE L1 -5031 2707 6 1616 170 3 0 chrX 44996693 44996975 -131977165 - L1PBa LINE L1 -5706 1157 875 905 214 5 0 chrX 44997118 44997305 -131976835 + L1PBa LINE L1 8 195 -6668 11854 229 52 14 chrX 44997308 45002307 -131971833 + L1PBa LINE L1 634 5926 -936 6716 226 49 22 chrX 45002296 45003488 -131970652 + L1 LINE L1 2124 3283 -2863 * 1874 150 56 19 chrX 45003488 45003847 -131970293 - THE1C LTR MaLR 0 375 4 9664 107 41 60 chrX 45003850 45005459 -131968681 - THE1C-int LTR MaLR 0 1580 2 2332 102 30 21 chrX 45005460 45005832 -131968308 - THE1C LTR MaLR 0 375 1 6716 226 49 22 chrX 45005832 45006697 -131967443 + L1 LINE L1 3283 4242 -1904 1282 307 42 14 chrX 45006707 45007140 -131967000 + L1PB4 LINE L1 4 448 -6401 343 293 64 76 chrX 45007215 45007372 -131966768 + L1PB4 LINE L1 646 800 -6049 12702 215 35 18 chrX 45007993 45010766 -131963374 + L1PB4 LINE L1 1067 3793 -3065 243 0 0 0 chrX 45010766 45010793 -131963347 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 12702 215 35 18 chrX 45010793 45013506 -131960634 + L1PB4 LINE L1 3793 6629 -229 368 210 62 0 chrX 45013506 45013587 -131960553 + L1ME3A LINE L1 5523 5608 -562 266 250 60 0 chrX 45013613 45013697 -131960443 + L1ME3A LINE L1 5693 5781 -381 913 187 0 22 chrX 45013716 45013898 -131960242 + AluJo SINE Alu 115 292 -20 364 221 165 0 chrX 45013899 45014026 -131960114 + L1ME3A LINE L1 5816 5963 -207 2107 200 68 0 chrX 45014026 45014495 -131959645 + L1MB7 LINE L1 5667 6167 -17 353 246 118 20 chrX 45014533 45014736 -131959404 + L1ME3A LINE L1 5948 6170 0 22 0 0 0 chrX 45014902 45014924 -131959216 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 45016059 45016086 -131958054 + AT_rich Low_complexity Low_complexity 1 27 0 664 141 92 7 chrX 45016544 45016686 -131957454 - L1MA8 LINE L1 -3 6288 6135 197 156 0 0 chrX 45017572 45017604 -131956536 + L2 LINE L2 3261 3292 -21 391 379 81 25 chrX 45018556 45018999 -131955141 + L2 LINE L2 2390 2857 -457 2163 129 100 6 chrX 45019490 45019931 -131954209 - MER1A DNA MER1_type -4 525 1 569 98 49 0 chrX 45019997 45020140 -131954000 + (TA)n Simple_repeat Simple_repeat 1 150 0 297 0 0 0 chrX 45021800 45021833 -131952307 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 176 118 20 chrX 45021904 45021955 -131952185 + MIR SINE MIR 156 211 -51 310 224 15 0 chrX 45022465 45022532 -131951608 - MIR SINE MIR -109 153 86 198 0 0 0 chrX 45022870 45022892 -131951248 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 633 292 0 36 chrX 45022893 45023061 -131951079 - MIR3 SINE MIR -30 178 17 353 264 67 114 chrX 45024792 45025197 -131948943 - L1M2 LINE L1 -5468 1381 996 22 0 0 0 chrX 45025385 45025407 -131948733 + GC_rich Low_complexity Low_complexity 1 22 0 359 270 108 70 chrX 45025688 45025947 -131948193 + L1M4 LINE L1 4724 4992 -1154 1044 260 42 112 chrX 45026962 45027694 -131946446 - L1ME3A LINE L1 -34 6136 5456 1520 277 105 40 chrX 45027934 45029025 -131945115 - L1ME3A LINE L1 -975 5171 4010 372 236 183 91 chrX 45029037 45029278 -131944862 - LTR41 LTR ERVL -9 764 502 369 0 0 0 chrX 45029526 45029567 -131944573 + (TG)n Simple_repeat Simple_repeat 1 41 0 576 220 32 75 chrX 45029758 45029944 -131944196 - LTR41 LTR ERVL -592 181 4 421 184 0 0 chrX 45030076 45030152 -131943988 + L1PB4 LINE L1 6076 6151 -5 43 56 0 0 chrX 45032935 45033006 -131941134 + AT_rich Low_complexity Low_complexity 1 71 0 1504 221 123 31 chrX 45033024 45033480 -131940660 - L1ME1 LINE L1 -82 6084 5587 333 250 0 0 chrX 45033536 45033604 -131940536 + HERVL40 LTR ERVL 5408 5475 -55 1730 202 46 65 chrX 45033606 45034084 -131940056 + LTR55 LTR ERV 1 469 -79 2092 108 0 26 chrX 45034084 45034389 -131939751 + AluSx SINE Alu 1 297 -15 1730 202 46 65 chrX 45034389 45034450 -131939690 + LTR55 LTR ERV 469 530 -18 301 339 8 8 chrX 45037202 45037320 -131936820 + HERVL40 LTR ERVL 1837 1954 -3731 3947 128 7 11 chrX 45037595 45038203 -131935937 + HERVE LTR ERV1 2644 3353 -4299 1209 148 0 0 chrX 45038203 45038392 -131935748 - HERVE LTR ERV1 -2156 5657 5469 1172 113 6 0 chrX 45038379 45038539 -131935601 - HERVE LTR ERV1 -2656 5157 4997 * 879 266 44 39 chrX 45038857 45039195 -131934945 + HERVL40 LTR ERVL 2476 2815 -741 198 0 0 0 chrX 45041582 45041604 -131932536 + (CA)n Simple_repeat Simple_repeat 1 22 0 1508 93 23 5 chrX 45042062 45042277 -131931863 - L1PA16 LINE L1 -3 6163 5945 2223 91 3 36 chrX 45042479 45042788 -131931352 - AluSg SINE Alu -11 299 1 1668 209 17 50 chrX 45044280 45044759 -131929381 + LTR55 LTR ERV 69 531 -17 678 219 12 26 chrX 45044908 45045111 -131929029 + LTR40b LTR ERVL 288 462 0 759 276 107 71 chrX 45045389 45045799 -131928341 + HERVL40 LTR ERVL 963 1387 -4143 483 311 25 41 chrX 45046111 45046355 -131927785 + HERVL40 LTR ERVL 1378 1617 -3913 * 1182 260 26 40 chrX 45046354 45046704 -131927436 + HERVL40 LTR ERVL 2050 2394 -3136 1379 279 15 0 chrX 45046705 45047042 -131927098 + HERVL40 LTR ERVL 2562 2903 -2627 2577 252 65 16 chrX 45049981 45051170 -131922970 + HERVL40 LTR ERVL 2898 4290 -1240 21 0 0 0 chrX 45051174 45051195 -131922945 + AT_rich Low_complexity Low_complexity 1 21 0 2797 153 27 6 chrX 45051202 45051678 -131922462 - L1MA6 LINE L1 0 6300 5815 182 36 0 36 chrX 45051679 45051707 -131922433 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 7381 27 2 0 chrX 45051791 45052648 -131921492 - L1PA3 LINE L1 0 6155 5297 3522 196 62 28 chrX 45052630 45052924 -131921216 - L1MA6 LINE L1 -469 5831 5549 * 2050 136 10 3 chrX 45052924 45053233 -131920907 - AluSx SINE Alu -1 311 1 3522 196 62 28 chrX 45053233 45054091 -131920049 - L1MA6 LINE L1 -751 5549 4638 691 65 27 49 chrX 45054091 45054275 -131919865 + (TA)n Simple_repeat Simple_repeat 1 180 0 308 110 49 43 chrX 45054237 45054400 -131919740 + (TATAA)n Simple_repeat Simple_repeat 5 168 0 * 45 19 0 0 chrX 45054402 45054454 -131919686 + AT_rich Low_complexity Low_complexity 1 52 0 3109 171 26 40 chrX 45054454 45055148 -131918992 - L1MA6 LINE L1 -1514 4632 3949 * 14555 190 27 47 chrX 45055115 45055185 -131918955 - L1PA15 LINE L1 -9 6156 6086 12431 36 3 0 chrX 45055185 45057358 -131916782 - L1PA4 LINE L1 -5 6150 3973 14555 190 27 47 chrX 45057358 45058448 -131915692 - L1PA15 LINE L1 -79 6086 4976 823 110 0 0 chrX 45058448 45058598 -131915542 - AluSc SINE Alu 0 322 173 14555 190 27 47 chrX 45058598 45061644 -131912496 - L1PA15 LINE L1 -1189 4976 1918 2163 114 0 3 chrX 45061644 45061950 -131912190 + AluY SINE Alu 5 309 -2 14555 190 27 47 chrX 45061950 45062011 -131912129 - L1PA15 LINE L1 -4247 1918 1857 * 15475 48 6 1 chrX 45061998 45063913 -131910227 - L1PA5 LINE L1 -1013 5133 3209 7638 59 0 0 chrX 45063913 45064938 -131909202 + L1PA5 LINE L1 5128 6152 -2 4062 196 16 11 chrX 45064947 45065916 -131908224 - L1PA15 LINE L1 -4275 3309 2319 312 332 53 35 chrX 45067754 45068170 -131905970 - L1PA15 LINE L1 -6571 1014 2 * 2881 243 63 13 chrX 45068167 45068592 -131905548 - L1 LINE L1 -2122 3912 3510 21395 45 3 2 chrX 45068592 45071916 -131902224 + L1PA4 LINE L1 2781 6155 0 2881 243 63 13 chrX 45071916 45072429 -131901711 - L1 LINE L1 -2524 3510 2927 4562 265 60 43 chrX 45072443 45074611 -131899529 - L1 LINE L1 -3573 2461 554 4057 172 25 0 chrX 45074611 45075319 -131898821 + L1MA5 LINE L1 5573 6298 -2 4562 265 60 43 chrX 45075319 45075883 -131898257 - L1 LINE L1 -5480 554 1 303 173 12 49 chrX 45076475 45076556 -131897584 - L1MB8 LINE L1 0 6414 6337 478 76 76 0 chrX 45076556 45076622 -131897518 - AluY SINE Alu -26 285 215 2715 212 54 36 chrX 45076649 45077835 -131896305 - L1MB8 LINE L1 -315 6099 4863 1907 150 0 0 chrX 45077835 45078140 -131896000 + AluSx SINE Alu 1 281 -31 2715 212 54 36 chrX 45078140 45078416 -131895724 - L1MB8 LINE L1 -1551 4863 4593 3071 149 66 6 chrX 45078422 45078940 -131895200 - MER41B LTR ERV1 -86 549 1 4852 106 42 34 chrX 45078940 45080441 -131893699 - MER41B-int LTR ERV1 0 6129 4491 3708 158 36 2 chrX 45080453 45081067 -131893073 - MER41B-int LTR ERV1 -5311 635 1 863 153 40 7 chrX 45081067 45081217 -131892923 - MER41B LTR ERV1 0 635 481 1131 221 54 73 chrX 45081217 45081643 -131892497 - L1MB8 LINE L1 -1778 4604 4187 * 5529 130 26 11 chrX 45081638 45082736 -131891404 - L1PA13 LINE L1 -4 6159 5045 737 284 86 3 chrX 45082718 45083010 -131891130 - L1MB8 LINE L1 -2201 4181 3866 * 1169 258 36 17 chrX 45083069 45083545 -131890595 - L1MB8 LINE L1 -3447 2935 2451 296 254 92 0 chrX 45083598 45083740 -131890400 - L1MB8 LINE L1 -3931 2453 2299 4377 157 66 3 chrX 45083748 45084683 -131889457 - L1MA4A LINE L1 -5 7717 6716 * 6696 201 39 16 chrX 45084665 45086198 -131887942 - L1PA15 LINE L1 -2 6163 4549 1863 144 10 10 chrX 45086198 45086497 -131887643 - AluSx SINE Alu -13 299 1 6696 201 39 16 chrX 45086497 45087529 -131886611 - L1PA15 LINE L1 -1616 4549 3542 4886 221 30 23 chrX 45087530 45089011 -131885129 - L1MA4A LINE L1 -815 6750 5260 3440 144 13 57 chrX 45089022 45089638 -131884502 - LTR8 LTR ERV1 -102 589 1 2614 200 8 22 chrX 45089638 45090172 -131883968 - HUERS-P1 LTR ERV1 0 6263 5738 1081 112 66 25 chrX 45090167 45090364 -131883776 - HUERS-P1 LTR ERV1 -751 5195 4991 * 1277 140 7 102 chrX 45090364 45090657 -131883483 - HUERS-P1 LTR ERV1 -998 5265 5001 275 282 32 0 chrX 45090680 45090804 -131883336 - L1MA4A LINE L1 -4564 3001 2874 2124 107 13 3 chrX 45090983 45091282 -131882858 + AluSq SINE Alu 1 302 -11 230 0 33 0 chrX 45091400 45091430 -131882710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1396 262 45 27 chrX 45091739 45092228 -131881912 + MLT1D LTR MaLR 1 498 -7 2158 111 6 16 chrX 45092567 45092882 -131881258 - AluSx SINE Alu 0 312 1 2058 173 47 12 chrX 45093601 45094023 -131880117 - HUERS-P1 LTR ERV1 -1580 4366 3930 1674 199 0 30 chrX 45094040 45094342 -131879798 - HUERS-P1 LTR ERV1 -5970 293 1 903 148 7 0 chrX 45094342 45094484 -131879656 - LTR8 LTR ERV1 0 691 549 421 229 9 0 chrX 45094485 45094590 -131879550 - L1 LINE L1 -2299 3847 3742 27 0 0 0 chrX 45094744 45094771 -131879369 + AT_rich Low_complexity Low_complexity 1 27 0 22246 47 1 2 chrX 45094771 45098363 -131875777 - L1PA4 LINE L1 -3 6152 2562 3083 196 48 64 chrX 45098397 45099242 -131874898 - L1 LINE L1 -1980 5187 4361 2168 99 10 0 chrX 45099242 45099534 -131874606 - AluY SINE Alu -15 296 2 3083 196 48 64 chrX 45099534 45099751 -131874389 - L1 LINE L1 -2806 4361 4142 233 317 0 0 chrX 45101117 45101177 -131872963 + (CCCCAG)n Simple_repeat Simple_repeat 5 64 0 775 101 34 34 chrX 45101476 45101655 -131872485 + CT-rich Low_complexity Low_complexity 1 179 0 1639 275 46 3 chrX 45101695 45102265 -131871875 - L1 LINE L1 -3022 4145 3552 1202 187 5 5 chrX 45102265 45102479 -131871661 - AluJb SINE Alu -12 300 87 6467 242 24 28 chrX 45102500 45104296 -131869844 - L1 LINE L1 -3630 3537 1735 213 39 0 0 chrX 45104296 45104322 -131869818 + (CAG)n Simple_repeat Simple_repeat 2 27 0 6467 242 24 28 chrX 45104322 45104405 -131869735 - L1 LINE L1 -5432 1735 1653 4520 152 51 167 chrX 45104405 45105850 -131868290 + MER52C LTR ERV1 1 1278 0 6467 242 24 28 chrX 45105850 45106804 -131867336 - L1 LINE L1 -5514 1653 709 770 261 6 11 chrX 45106805 45106981 -131867159 - L1 LINE L1 -6329 839 665 449 281 44 59 chrX 45107001 45107204 -131866936 - L1 LINE L1 -6352 816 617 214 137 0 39 chrX 45107213 45107264 -131866876 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 4333 194 43 49 chrX 45107316 45107492 -131866648 - L1 LINE L1 -985 5161 4985 378 0 0 0 chrX 45107492 45107534 -131866606 + (TG)n Simple_repeat Simple_repeat 2 43 0 4333 194 43 49 chrX 45107534 45108531 -131865609 - L1 LINE L1 -1161 4985 3995 2466 289 63 21 chrX 45108534 45110099 -131864041 - L1MC/D LINE L1 -743 5403 3863 12032 164 12 2 chrX 45110104 45112856 -131861284 - L1PA12 LINE L1 -284 5884 3108 17767 191 28 26 chrX 45112868 45116891 -131857249 + L1M1 LINE L1 126 4158 -3407 1712 160 7 4 chrX 45116891 45117166 -131856974 + AluSx SINE Alu 17 292 -20 17767 191 28 26 chrX 45117166 45117553 -131856587 + L1M1 LINE L1 4158 4543 -3022 20035 157 102 64 chrX 45117562 45117962 -131856178 + L1MA1 LINE L1 12 395 -5907 315 0 0 0 chrX 45117962 45117997 -131856143 + (TTG)n Simple_repeat Simple_repeat 2 36 0 20035 157 102 64 chrX 45117997 45123649 -131850491 + L1MA1 LINE L1 395 6302 0 33 66 0 0 chrX 45123649 45123710 -131850430 + AT_rich Low_complexity Low_complexity 1 61 0 5044 140 41 32 chrX 45123714 45124361 -131849779 - L1PB1 LINE L1 0 6151 5488 204 40 0 0 chrX 45124361 45124386 -131849754 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 5044 140 41 32 chrX 45124386 45124923 -131849217 - L1PB1 LINE L1 -663 5488 4957 2070 266 49 17 chrX 45324930 45325789 -131648351 + L1M4c LINE L1 1172 2131 -4253 844 250 40 0 chrX 45325858 45326106 -131648034 + L1M4c LINE L1 3025 3282 -3100 921 128 11 39 chrX 45326110 45326289 -131647851 + L1MA3 LINE L1 5969 6142 -163 2229 182 31 47 chrX 45326395 45326906 -131647234 + L1MB1 LINE L1 5665 6167 -1 412 234 2 0 chrX 45326914 45327046 -131647094 + L1M4c LINE L1 3248 3382 -3000 * 4638 71 1 3 chrX 45327042 45328009 -131646131 - L1PA7 LINE L1 -295 5859 4894 2122 107 0 0 chrX 45328009 45328305 -131645835 + L1PA7 LINE L1 5854 6153 -1 3894 250 50 13 chrX 45328316 45329669 -131644471 + L1M4c LINE L1 3365 4766 -1616 328 290 73 8 chrX 45329906 45330030 -131644110 - MIR SINE MIR -82 180 49 228 271 179 0 chrX 45330038 45330178 -131643962 - L1ME4a LINE L1 -1 6120 5956 21 0 0 0 chrX 45330215 45330236 -131643904 + AT_rich Low_complexity Low_complexity 1 21 0 324 225 108 0 chrX 45330248 45330377 -131643763 - L1ME4a LINE L1 -12 6109 5967 3874 218 34 11 chrX 45330507 45331846 -131642294 - L1PB4 LINE L1 -3 6855 5496 5237 226 30 65 chrX 45331949 45334940 -131639200 - L1PB4 LINE L1 -2059 4789 1906 233 167 61 0 chrX 45334944 45335010 -131639130 + (TA)n Simple_repeat Simple_repeat 2 71 0 323 328 0 0 chrX 45335011 45335129 -131639011 - L1MC4 LINE L1 -1339 6703 6609 373 171 23 0 chrX 45335152 45335240 -131638900 + (TA)n Simple_repeat Simple_repeat 2 91 0 285 230 23 0 chrX 45335241 45335328 -131638812 + L1MC4 LINE L1 6615 6703 -1339 * 286 228 0 22 chrX 45335250 45335342 -131638798 - L1MC4 LINE L1 -1339 6703 6614 516 86 57 0 chrX 45335345 45335450 -131638690 + (TA)n Simple_repeat Simple_repeat 2 112 0 3536 276 47 7 chrX 45335450 45336421 -131637719 - L1PB4 LINE L1 -4977 1872 863 3932 255 37 19 chrX 45336563 45338223 -131635917 + L1PA12 LINE L1 2203 3918 -3666 14610 61 0 0 chrX 45338323 45340998 -131633142 + L1PA4 LINE L1 3476 6153 -2 650 229 23 6 chrX 45341023 45341198 -131632942 - L1 LINE L1 -1512 4634 4457 379 204 0 0 chrX 45341226 45341314 -131632826 - L1 LINE L1 -1602 4544 4457 225 185 0 0 chrX 45341318 45341383 -131632757 + (TA)n Simple_repeat Simple_repeat 2 66 0 198 194 45 0 chrX 45341539 45341606 -131632534 + GA-rich Low_complexity Low_complexity 3 72 0 421 351 69 19 chrX 45342128 45342375 -131631765 - MIR SINE MIR -6 256 2 183 314 110 8 chrX 45342670 45342788 -131631352 + MIR SINE MIR 35 164 -98 227 200 0 122 chrX 45343367 45343457 -131630683 + MER116 DNA Mariner 1 79 -1 423 207 67 30 chrX 45343508 45343643 -131630497 + MER96B DNA MER1_type? 225 364 -53 368 205 248 31 chrX 45343905 45344066 -131630074 - L2 LINE L2 0 3313 3118 362 236 75 28 chrX 45345216 45345322 -131628818 + MER21B LTR ERV1 629 739 -124 275 193 0 57 chrX 45345394 45345468 -131628672 + L1M3c LINE L1 6 254 -5877 2300 153 22 15 chrX 45345469 45345931 -131628209 - LTR56 LTR ERV1 0 445 6 445 393 40 10 chrX 45345974 45346277 -131627863 + L1M3c LINE L1 139 450 -5691 418 316 29 23 chrX 45347356 45347530 -131626610 + L1M3c LINE L1 959 1133 -5008 3182 202 27 74 chrX 45347531 45349244 -131624896 + L1MA8 LINE L1 4603 6235 -56 1236 211 29 86 chrX 45349244 45349601 -131624539 - MLT2B3 LTR ERVL 0 554 220 860 257 57 3 chrX 45349730 45350045 -131624095 - L1M4 LINE L1 -3170 2976 2645 2106 274 26 11 chrX 45350060 45350593 -131623547 + MER21B LTR ERV1 13 553 -310 440 195 0 73 chrX 45350721 45350844 -131623296 + L1MA9 LINE L1 5928 6041 -271 191 36 36 0 chrX 45350853 45350881 -131623259 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 363 78 0 0 chrX 45350880 45350931 -131623209 + (TG)n Simple_repeat Simple_repeat 2 52 0 2421 206 100 11 chrX 45350959 45351700 -131622440 + L1MC3 LINE L1 5512 6334 -10 1810 52 9 13 chrX 45354258 45354490 -131619650 - AluY SINE Alu -15 296 66 845 228 96 51 chrX 45354490 45354817 -131619323 + MLT1A1 LTR MaLR 7 348 -17 23851 45 2 0 chrX 45354887 45358609 -131615531 - L1PA4 LINE L1 0 6155 2382 742 355 77 62 chrX 45359423 45360055 -131614085 - L2 LINE L2 -610 2704 2083 930 124 0 26 chrX 45360055 45360208 -131613932 + L1MA2 LINE L1 6156 6304 0 742 355 77 62 chrX 45360208 45360611 -131613529 - L2 LINE L2 -1231 2083 1688 207 0 0 0 chrX 45360611 45360634 -131613506 + (TG)n Simple_repeat Simple_repeat 1 23 0 742 355 77 62 chrX 45360634 45361047 -131613093 - L2 LINE L2 -1626 1688 1233 1918 85 15 3 chrX 45362137 45363909 -131610231 + L1PA7 LINE L1 4247 6119 -35 301 276 9 9 chrX 45363926 45364042 -131610098 + L1M4 LINE L1 3211 3326 -2820 576 309 19 4 chrX 45364142 45364404 -131609736 + L1M4 LINE L1 4847 5112 -1034 344 212 20 0 chrX 45364409 45364508 -131609632 + L1M LINE L1 5292 5392 -786 8782 177 16 12 chrX 45364550 45367451 -131606689 + L1PB1 LINE L1 3241 6150 -1 266 200 0 0 chrX 45367463 45367518 -131606622 + L1MB4 LINE L1 6124 6178 -2 4582 181 10 7 chrX 45367663 45368528 -131605612 + L1PA16 LINE L1 5290 6157 -9 2743 172 48 2 chrX 45368544 45369080 -131605060 + L1PA16 LINE L1 5602 6162 -4 1566 205 36 23 chrX 45369098 45369236 -131604904 - L1 LINE L1 -3386 3781 3646 2140 167 6 0 chrX 45369236 45369571 -131604569 - MER1B DNA MER1_type 0 337 1 1566 205 36 23 chrX 45369571 45369817 -131604323 - L1 LINE L1 -3521 3646 3392 4073 258 63 31 chrX 45369841 45371786 -131602354 - L1 LINE L1 -3898 3269 1553 1967 315 28 18 chrX 45372025 45372705 -131601435 - L1 LINE L1 -6479 689 3 999 219 15 0 chrX 45372743 45372944 -131601196 - Charlie1a DNA MER1_type -1202 253 50 3193 268 51 13 chrX 45373130 45374021 -131600119 + L1PA13 LINE L1 295 1151 -5646 213 39 0 0 chrX 45374021 45374047 -131600093 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 3193 268 51 13 chrX 45374047 45375005 -131599135 + L1PA13 LINE L1 1151 2684 -4113 7986 256 38 14 chrX 45375010 45377692 -131596448 + L1 LINE L1 3168 5914 -883 3014 49 0 0 chrX 45377691 45378057 -131596083 - L1PA7 LINE L1 -24 6130 5765 * 1270 220 35 3 chrX 45378086 45378404 -131595736 + L1 LINE L1 2690 3017 -4548 1572 224 26 8 chrX 45378406 45379105 -131595035 + L1 LINE L1 4076 5037 -2528 2910 98 2 0 chrX 45379107 45379517 -131594623 + L1PA8 LINE L1 5757 6167 -5 387 188 183 30 chrX 45379547 45379750 -131594390 + L1M3a LINE L1 946 1184 -4771 558 238 16 37 chrX 45379887 45380076 -131594064 + L1 LINE L1 6498 6682 -883 2518 105 0 0 chrX 45380078 45380441 -131593699 - L1PA7 LINE L1 -27 6127 5765 1270 220 35 3 chrX 45380470 45380788 -131593352 + L1M3a LINE L1 1159 1486 -4548 1572 243 21 13 chrX 45380790 45381260 -131592880 + L1M3a LINE L1 2545 3018 -3016 642 172 9 0 chrX 45381522 45381638 -131592502 - MLT2B3 LTR ERVL -433 121 5 268 148 0 0 chrX 45381642 45381703 -131592437 + L1MA7 LINE L1 6231 6291 0 1388 273 41 18 chrX 45381722 45382423 -131591717 + L1M3c LINE L1 1129 1832 -4379 672 83 39 32 chrX 45382433 45382589 -131591551 + GA-rich Low_complexity Low_complexity 2 158 0 1557 258 81 25 chrX 45382592 45383336 -131590804 + L1M1 LINE L1 2849 3633 -3932 213 132 0 0 chrX 45383340 45383378 -131590762 + (TA)n Simple_repeat Simple_repeat 1 38 0 2826 161 15 0 chrX 45383378 45383855 -131590285 - L1PB3 LINE L1 -17 6137 5654 2461 305 132 23 chrX 45383879 45384081 -131590059 + L1M1 LINE L1 3656 3835 -3730 1686 192 3 7 chrX 45384081 45384389 -131589751 + AluJb SINE Alu 1 307 -5 2461 305 132 23 chrX 45384389 45385456 -131588684 + L1M1 LINE L1 3835 5063 -2502 7203 262 49 36 chrX 45385459 45389951 -131584189 + L1M2 LINE L1 9 4558 -2290 25283 71 1 0 chrX 45390027 45394350 -131579790 + L1PA5 LINE L1 2064 6150 -4 244 174 41 133 chrX 45394351 45394449 -131579691 - L1M1 LINE L1 -4246 3319 3231 2410 231 40 5 chrX 45394550 45395243 -131578897 - L1M1 LINE L1 -4758 2807 2123 326 295 6 39 chrX 45395416 45395572 -131578568 - MER83B-int LTR ERV1 -480 4474 4324 216 0 0 0 chrX 45395640 45395664 -131578476 + (T)n Simple_repeat Simple_repeat 1 24 0 5974 195 96 11 chrX 45395989 45397505 -131576635 - MER83B-int LTR ERV1 -62 6269 4625 12199 243 38 20 chrX 45397513 45401726 -131572414 + L1PA15 LINE L1 1 4133 -2683 189 0 0 0 chrX 45401726 45401747 -131572393 + (CAA)n Simple_repeat Simple_repeat 3 23 0 12199 243 38 20 chrX 45401747 45402212 -131571928 + L1PA15 LINE L1 4133 4588 -2228 276 30 0 0 chrX 45402212 45402245 -131571895 + (CAA)n Simple_repeat Simple_repeat 1 33 0 12199 243 38 20 chrX 45402245 45404251 -131569889 + L1PA15 LINE L1 4588 6810 -6 4158 194 58 43 chrX 45404255 45405495 -131568645 - MER83B-int LTR ERV1 -1572 4691 3475 2954 204 15 0 chrX 45405499 45406043 -131568097 - MER41D LTR ERV1 -5 552 1 2475 150 42 25 chrX 45406043 45406622 -131567518 - MER83B-int LTR ERV1 -2096 2784 2317 286 181 349 0 chrX 45406618 45406701 -131567439 - MER83B-int LTR ERV1 -4144 979 868 * 496 272 0 0 chrX 45406690 45406793 -131567347 - MER83B-int LTR ERV1 -3737 2209 2107 362 190 184 74 chrX 45406783 45406871 -131567269 - MER83B-int LTR ERV1 -2594 2286 2209 * 387 0 0 0 chrX 45406871 45406914 -131567226 + (CA)n Simple_repeat Simple_repeat 2 44 0 362 190 184 74 chrX 45406914 45406988 -131567152 - MER83B-int LTR ERV1 -2671 2209 2106 226 344 16 0 chrX 45407023 45407087 -131567053 - tRNA-Glu-GAG tRNA tRNA -3 72 8 39785 79 3 2 chrX 45407272 45413412 -131560728 - L1PA5 LINE L1 0 6154 11 1995 139 14 3 chrX 45413932 45414276 -131559864 + L1MA2 LINE L1 5957 6304 0 5527 254 30 20 chrX 45415336 45416192 -131557948 - L1PA12 LINE L1 -2514 5070 4224 3883 121 29 5 chrX 45416192 45416465 -131557675 + L1PB1 LINE L1 5508 5773 -378 201 74 0 0 chrX 45416465 45416492 -131557648 + (TA)n Simple_repeat Simple_repeat 2 28 0 3883 121 29 5 chrX 45416492 45416845 -131557295 + L1PB1 LINE L1 5773 6149 -2 5527 254 30 20 chrX 45416845 45418665 -131555475 - L1PA12 LINE L1 -3360 4224 2358 233 385 34 8 chrX 45419054 45419171 -131554969 + L2 LINE L2 2940 3059 -213 227 264 192 27 chrX 45420241 45420379 -131553761 - MIR SINE MIR -53 155 5 2162 193 67 38 chrX 45420567 45420930 -131553210 - L1 LINE L1 -2718 3428 3077 1387 215 3 21 chrX 45420930 45421241 -131552899 - AluJo SINE Alu 0 308 3 2162 193 67 38 chrX 45421241 45421408 -131552732 - L1 LINE L1 -3069 3077 2916 2078 130 0 10 chrX 45421408 45421716 -131552424 - AluSx SINE Alu -5 307 3 2162 193 67 38 chrX 45421716 45421840 -131552300 - L1 LINE L1 -3230 2916 2752 495 129 0 0 chrX 45421840 45421925 -131552215 - L1MA4A LINE L1 -23 6280 6196 2028 197 50 14 chrX 45421932 45422414 -131551726 - L1MA4A LINE L1 -181 6122 5624 619 188 17 0 chrX 45422414 45422531 -131551609 + MSTA LTR MaLR 298 416 -12 2418 258 22 14 chrX 45422563 45423393 -131550747 - L1 LINE L1 -2865 3281 2446 1066 239 58 0 chrX 45423396 45423672 -131550468 + L1 LINE L1 3449 3740 -2406 * 2837 97 0 0 chrX 45423663 45424045 -131550095 - L1P3 LINE L1 -5236 1225 844 6271 68 50 3 chrX 45424047 45424993 -131549147 + L1PA7 LINE L1 5164 6152 -2 830 269 57 13 chrX 45425003 45425319 -131548821 - L1MC4 LINE L1 -260 7782 7453 742 252 31 4 chrX 45425332 45425558 -131548582 - L1MC4 LINE L1 -663 7379 7148 182 77 39 39 chrX 45425567 45425619 -131548521 + (TA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chrX 45426500 45426521 -131547619 + AT_rich Low_complexity Low_complexity 1 21 0 520 331 11 6 chrX 45426545 45426720 -131547420 - MIR SINE MIR -47 215 40 2409 231 54 33 chrX 45426929 45428183 -131545957 - L1MB7 LINE L1 -5 6161 4848 2125 321 76 55 chrX 45428197 45429472 -131544668 + L1M3b LINE L1 1 1302 -4979 399 271 84 92 chrX 45430196 45430469 -131543671 + L1PBb LINE L1 796 1066 -5783 5123 213 65 17 chrX 45430753 45431064 -131543076 + L1PBb LINE L1 1117 1412 -5436 2211 96 3 34 chrX 45431064 45431387 -131542753 + AluSp SINE Alu 1 313 0 5123 213 65 17 chrX 45431387 45432440 -131541700 + L1PBb LINE L1 1412 2634 -4214 21 0 0 0 chrX 45432440 45432461 -131541679 + AT_rich Low_complexity Low_complexity 1 21 0 9919 152 29 60 chrX 45432461 45434766 -131539374 + L1PA8 LINE L1 10 2299 -4162 4233 62 0 0 chrX 45434762 45435314 -131538826 - L1PA5 LINE L1 -2363 3783 3232 * 12739 41 1 6 chrX 45435314 45437684 -131536456 + L1PA5 LINE L1 3772 6154 0 21 36 0 0 chrX 45437910 45437938 -131536202 + AT_rich Low_complexity Low_complexity 1 28 0 13778 131 18 3 chrX 45437938 45440974 -131533166 + L1PA8 LINE L1 3437 6481 -6 4245 248 34 36 chrX 45440974 45442748 -131531392 + L1PBb LINE L1 2651 4407 -2441 * 39731 77 3 0 chrX 45442746 45448045 -131526095 - L1P LINE L1 -822 5324 11 504 268 53 9 chrX 45448473 45448701 -131525439 - L1MEc LINE L1 -3988 2408 2171 208 203 16 16 chrX 45448713 45448777 -131525363 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 0 0 0 chrX 45448989 45449013 -131525127 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 252 0 0 0 chrX 45449012 45449040 -131525100 + (GA)n Simple_repeat Simple_repeat 2 29 0 8858 236 23 21 chrX 45449166 45453015 -131521125 + L1PA16 LINE L1 2311 6166 0 2579 101 19 3 chrX 45453097 45453474 -131520666 - L1PA13 LINE L1 -2 6161 5779 392 245 7 0 chrX 45453840 45453983 -131520157 + (TA)n Simple_repeat Simple_repeat 1 144 0 35 54 0 0 chrX 45453983 45454039 -131520101 + AT_rich Low_complexity Low_complexity 1 56 0 306 93 70 0 chrX 45454042 45454128 -131520012 + (TA)n Simple_repeat Simple_repeat 2 93 0 7757 246 29 37 chrX 45454155 45457432 -131516708 - L1 LINE L1 -1734 5114 1819 1830 159 35 3 chrX 45457432 45457722 -131516418 + AluSx SINE Alu 3 301 -11 7757 246 29 37 chrX 45457722 45457979 -131516161 - L1 LINE L1 -5029 1819 1561 1064 220 62 0 chrX 45458055 45458328 -131515812 + L1MA3 LINE L1 6016 6305 0 374 270 72 0 chrX 45458910 45459021 -131515119 - MIR SINE MIR -75 187 69 244 346 19 62 chrX 45459397 45459559 -131514581 + L2 LINE L2 2904 3058 -214 252 215 0 31 chrX 45459947 45460012 -131514128 + L1M3c LINE L1 1 63 -6078 216 130 0 0 chrX 45460012 45460058 -131514082 + (A)n Simple_repeat Simple_repeat 1 46 0 3740 245 131 7 chrX 45460493 45461603 -131512537 + ERVL LTR ERVL 789 2088 -3676 11269 231 34 38 chrX 45461618 45462449 -131511691 - L1PB4 LINE L1 -2 6870 6037 2393 73 0 13 chrX 45462449 45462752 -131511388 - AluY SINE Alu -12 299 1 11269 231 34 38 chrX 45462752 45466655 -131507485 - L1PB4 LINE L1 -835 6037 2073 1238 259 106 35 chrX 45466877 45467931 -131506209 - L1M4b LINE L1 -4422 2716 1423 554 215 0 27 chrX 45467941 45468090 -131506050 - L1PA16 LINE L1 0 6481 6337 848 247 7 25 chrX 45468090 45468365 -131505775 - L1PA16 LINE L1 -835 5626 5357 5852 93 4 5 chrX 45468379 45469209 -131504931 - L1PA8 LINE L1 -8 6164 5336 * 21391 143 24 12 chrX 45469203 45474278 -131499862 - L1PA16 LINE L1 -1210 5251 1 1104 96 51 0 chrX 45474299 45474456 -131499684 - AluSg/x SINE Alu -13 299 135 11832 259 21 12 chrX 45474466 45478676 -131495464 - L1PA12 LINE L1 -1111 6473 2228 470 203 0 34 chrX 45479454 45479572 -131494568 - L1M4b LINE L1 -5434 1425 1312 228 306 0 14 chrX 45479645 45479717 -131494423 - L1M4b LINE L1 -6089 770 700 681 286 43 31 chrX 45479864 45480119 -131494021 - L1M4b LINE L1 -6584 275 18 285 291 31 39 chrX 45480155 45480282 -131493858 - L2 LINE L2 0 3272 3147 304 221 74 63 chrX 45480404 45480499 -131493641 + MER117 DNA MER1_type 102 197 0 399 323 188 50 chrX 45481055 45481433 -131492707 + L2 LINE L2 2824 3253 -19 248 287 186 16 chrX 45481527 45481656 -131492484 + MIR SINE MIR 15 165 -97 * 655 296 22 27 chrX 45481631 45481854 -131492286 + MIR SINE MIR 9 230 -32 2011 126 4 0 chrX 45482842 45483119 -131491021 + AluSq SINE Alu 1 278 -35 365 39 0 19 chrX 45483121 45483173 -131490967 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 333 290 83 21 chrX 45483280 45483425 -131490715 - MIR SINE MIR -56 206 53 243 261 130 11 chrX 45483808 45483900 -131490240 + MIR SINE MIR 81 183 -79 1460 182 74 0 chrX 45484537 45484795 -131489345 + AluJb SINE Alu 1 277 -35 6180 125 5 13 chrX 45484799 45485696 -131488444 + THE1-int LTR MaLR 430 1318 -262 1855 211 62 17 chrX 45485934 45486397 -131487743 + L1MB8 LINE L1 5675 6173 -5 3954 272 37 5 chrX 45486408 45488076 -131486064 + L1M1 LINE L1 18 2415 -5150 24367 93 11 4 chrX 45488089 45491459 -131482681 + L1P LINE L1 12 3404 -2742 2981 253 51 99 chrX 45491566 45493220 -131480920 - L1PA15-16 LINE L1 -3993 2869 1296 887 348 31 60 chrX 45493194 45494621 -131479519 - L1PA15-16 LINE L1 -5440 1423 39 * 3921 198 28 14 chrX 45494843 45495584 -131478556 + ERVL LTR ERVL 2087 2838 -2926 452 193 36 0 chrX 45495609 45495692 -131478448 + ERVL LTR ERVL 4516 4601 -1163 1058 221 136 36 chrX 45495697 45496028 -131478112 + MLT1B LTR MaLR 4 367 -23 1463 143 0 34 chrX 45496028 45496265 -131477875 - AluSg SINE Alu -81 229 1 577 194 19 39 chrX 45496294 45496420 -131477720 + L1MA4 LINE L1 5913 6037 -263 13309 37 3 0 chrX 45496420 45498705 -131475435 + L1PA3 LINE L1 3865 6151 -4 577 194 19 39 chrX 45498705 45498733 -131475407 + L1MA4 LINE L1 6037 6064 -236 30143 122 11 61 chrX 45498735 45505217 -131468923 + L1PA7 LINE L1 3 6152 -2 1330 160 4 37 chrX 45505217 45505465 -131468675 + L1MA4 LINE L1 6039 6297 -3 28 29 0 0 chrX 45505505 45505540 -131468600 + AT_rich Low_complexity Low_complexity 1 35 0 2912 287 80 27 chrX 45505567 45506714 -131467426 + L1 LINE L1 129 1336 -4805 * 4293 241 68 65 chrX 45506692 45508212 -131465928 + L1 LINE L1 2338 3852 -2358 1721 181 42 6 chrX 45508212 45508543 -131465597 + MER7A DNA MER2_type 6 346 0 4293 241 68 65 chrX 45508543 45508860 -131465280 + L1 LINE L1 3852 4167 -2043 297 0 0 0 chrX 45508860 45508893 -131465247 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 4293 241 68 65 chrX 45508893 45509315 -131464825 + L1 LINE L1 4167 4586 -1624 189 0 0 0 chrX 45509315 45509336 -131464804 + (TAA)n Simple_repeat Simple_repeat 2 22 0 4293 241 68 65 chrX 45509336 45509649 -131464491 + L1 LINE L1 4586 5087 -1123 361 391 72 42 chrX 45509735 45510236 -131463904 + L1PBb LINE L1 14 529 -6320 287 406 13 17 chrX 45510377 45510611 -131463529 + L1PBb LINE L1 707 939 -5910 241 161 161 25 chrX 45511007 45511088 -131463052 + L1PBb LINE L1 1472 1563 -5285 1815 223 62 19 chrX 45511093 45511772 -131462368 + L1PB4 LINE L1 710 1512 -4691 2955 99 53 0 chrX 45511818 45512230 -131461910 + LTR17 LTR ERV1 347 780 0 14469 89 12 38 chrX 45512230 45514300 -131459840 + HERV17 LTR ERV1 2 2016 -6610 * 30027 52 2 10 chrX 45514283 45516286 -131457854 + HERV17 LTR ERV1 2430 4393 -4233 2217 113 0 3 chrX 45516286 45516588 -131457552 - AluY SINE Alu -10 301 1 30027 52 2 10 chrX 45516588 45518203 -131455937 + HERV17 LTR ERV1 4393 6019 -2607 2322 90 0 0 chrX 45518237 45518538 -131455602 + HERV17 LTR ERV1 6832 8621 -5 2543 68 3 3 chrX 45518544 45518869 -131455271 + LTR17 LTR ERV1 1 325 -455 1364 218 27 0 chrX 45518869 45519162 -131454978 + L1PB4 LINE L1 1488 1788 -4415 1446 30 0 0 chrX 45519163 45519328 -131454812 - L1PA5 LINE L1 -397 5757 5593 3398 45 8 0 chrX 45519329 45519725 -131454415 + L1PA5 LINE L1 5756 6154 0 4847 237 59 13 chrX 45519726 45521980 -131452160 + L1PB4 LINE L1 1768 4142 -2061 4475 191 48 17 chrX 45525065 45527090 -131447050 + L1PB4 LINE L1 4125 6212 -1 2988 202 57 9 chrX 45527100 45528003 -131446137 + L1MA9 LINE L1 5009 5953 -359 197 205 0 0 chrX 45578112 45578151 -131395989 - L2 LINE L2 -4 3268 3230 695 185 38 22 chrX 45578508 45578692 -131395448 - MER53 DNA DNA 0 189 3 22 0 0 0 chrX 45578767 45578789 -131395351 + AT_rich Low_complexity Low_complexity 1 22 0 376 368 82 21 chrX 45578873 45579213 -131394927 + L1MEc LINE L1 2113 2473 -3923 417 311 134 18 chrX 45579642 45580082 -131394058 + L1MEc LINE L1 2932 3422 -2793 191 171 0 0 chrX 45580134 45580169 -131393971 + L2 LINE L2 3235 3269 -3 545 248 147 0 chrX 45580396 45580553 -131393587 - MIR SINE MIR -4 258 79 198 143 0 0 chrX 45580675 45580710 -131393430 + (TC)n Simple_repeat Simple_repeat 2 36 0 235 206 0 41 chrX 45580737 45580810 -131393330 - L1MC4a LINE L1 -1871 5937 5868 574 273 50 40 chrX 45581357 45581555 -131392585 + MIR SINE MIR 60 259 -3 835 235 18 66 chrX 45581745 45581914 -131392226 - MIR SINE MIR 0 262 109 2517 61 0 3 chrX 45581914 45582225 -131391915 + AluY SINE Alu 1 310 -1 835 235 18 66 chrX 45582225 45582327 -131391813 - MIR SINE MIR -153 109 4 497 56 0 144 chrX 45582438 45582528 -131391612 - MADE1 DNA Mariner 0 80 4 205 372 0 13 chrX 45582688 45582766 -131391374 - L2 LINE L2 -16 3297 3221 267 103 0 0 chrX 45583189 45583228 -131390912 + (GA)n Simple_repeat Simple_repeat 2 40 0 323 290 151 27 chrX 45584017 45584203 -131389937 + MIR SINE MIR 53 261 -1 440 323 194 32 chrX 45584353 45585212 -131388928 + L2 LINE L2 2222 3267 -5 539 260 79 15 chrX 45585600 45585794 -131388346 + MIR SINE MIR 13 208 -54 754 241 73 34 chrX 45585806 45586134 -131388006 - L1MB2 LINE L1 -36 6135 5795 910 140 0 70 chrX 45586138 45586335 -131387805 - AluSg/x SINE Alu 0 323 138 2651 291 47 56 chrX 45586337 45588047 -131386093 + L1PA12 LINE L1 527 2477 -5104 * 5202 140 17 3 chrX 45588022 45588999 -131385141 + L1PA15 LINE L1 6607 7596 -7 3675 185 49 27 chrX 45589274 45590191 -131383949 - L1MD1 LINE L1 -2 6240 5304 458 198 49 110 chrX 45590253 45590516 -131383624 - L1MD1 LINE L1 -1439 4707 4461 2004 211 7 0 chrX 45590517 45590935 -131383205 - L1PA13 LINE L1 -1950 4847 4427 22687 87 4 8 chrX 45590953 45595154 -131378986 - L1PA7 LINE L1 -1 6153 1973 23271 135 11 61 chrX 45595295 45600034 -131374106 - L1P LINE L1 -1643 4503 1 9430 226 96 8 chrX 45600047 45603775 -131370365 - L1PA13 LINE L1 -2358 4439 339 * 11578 172 20 1 chrX 45603773 45605734 -131368406 - L1PA12 LINE L1 -5577 2004 5 3949 209 39 61 chrX 45605742 45608148 -131365992 - L1P4 LINE L1 -382 5781 3433 942 252 5 0 chrX 45608276 45608490 -131365650 - L1MDa LINE L1 -6283 257 43 259 376 86 14 chrX 45608540 45608819 -131365321 + L2 LINE L2 2405 2703 -611 1345 261 78 30 chrX 45608828 45608981 -131365159 - L1ME2 LINE L1 -106 6058 5914 2231 103 0 0 chrX 45608981 45609271 -131364869 - AluSx SINE Alu 0 312 23 1345 261 78 30 chrX 45609271 45610440 -131363700 - L1ME2 LINE L1 -250 5914 4680 25 31 0 0 chrX 45610621 45610653 -131363487 + AT_rich Low_complexity Low_complexity 1 32 0 3095 223 34 21 chrX 45610717 45611545 -131362595 - L1MA9 LINE L1 0 6312 5496 2256 90 3 37 chrX 45611545 45611867 -131362273 + AluY SINE Alu 1 311 0 3095 223 34 21 chrX 45611867 45612861 -131361279 - L1MA9 LINE L1 -816 5496 4369 6385 86 7 0 chrX 45612861 45614030 -131360110 - L1PA7 LINE L1 0 6469 5295 27457 127 12 26 chrX 45614030 45618842 -131355298 - L1PA7 LINE L1 -1394 5067 2 4277 204 31 2 chrX 45618850 45619899 -131354241 - L1MA9 LINE L1 -1771 4375 3296 23 0 0 0 chrX 45619899 45619922 -131354218 + AT_rich Low_complexity Low_complexity 1 23 0 882 154 6 0 chrX 45619928 45620103 -131354037 - L1MA8 LINE L1 -21 6270 6095 371 102 0 0 chrX 45620103 45620162 -131353978 - L1MB8 LINE L1 -2 6176 6118 448 230 0 0 chrX 45620173 45620299 -131353841 - L1 LINE L1 -1700 4446 4321 1036 217 33 65 chrX 45620837 45621374 -131352766 - PABL_B LTR ERV1 -4 663 1 198 0 0 0 chrX 45621747 45621769 -131352371 + (A)n Simple_repeat Simple_repeat 1 22 0 2410 91 3 0 chrX 45621783 45622092 -131352048 - AluSp SINE Alu -3 310 1 190 390 40 0 chrX 45622434 45622534 -131351606 + L2 LINE L2 3167 3270 -43 488 270 131 22 chrX 45622767 45622989 -131351151 + MLT1J LTR MaLR 117 362 -149 255 103 0 0 chrX 45623060 45623099 -131351041 + (GA)n Simple_repeat Simple_repeat 2 40 0 1437 280 94 0 chrX 45623418 45623908 -131350232 + Cheshire DNA MER1_type 2 537 -1883 18273 139 19 85 chrX 45623927 45628097 -131346043 - L1P LINE L1 -2240 3906 12 3732 113 15 27 chrX 45628120 45628722 -131345418 - L1P3 LINE L1 -5159 1302 708 1849 124 10 0 chrX 45628722 45629013 -131345127 + L1PB2 LINE L1 5857 6150 -1 1085 211 178 0 chrX 45629062 45629399 -131344741 - L1P LINE L1 -795 5351 4955 * 1121 331 32 43 chrX 45629396 45630045 -131344095 + L1PA15 LINE L1 258 899 -5888 * 3251 248 37 22 chrX 45630044 45631278 -131342862 + L1PA15 LINE L1 1295 2567 -4230 492 156 7 96 chrX 45631272 45631433 -131342707 + L1PA15 LINE L1 4117 4259 -2538 * 1837 170 36 97 chrX 45631432 45631908 -131342232 + L1PA15 LINE L1 6357 6803 -13 5527 119 3 3 chrX 45631919 45632946 -131341194 - L1PA13 LINE L1 -4 6159 5111 25 0 0 0 chrX 45632954 45632979 -131341161 + AT_rich Low_complexity Low_complexity 1 25 0 4161 212 11 16 chrX 45633250 45634858 -131339282 + L1MA6 LINE L1 4696 6300 0 495 221 102 0 chrX 45634879 45635006 -131339134 + Cheshire DNA MER1_type 1727 1866 -554 388 194 10 10 chrX 45635014 45635112 -131339028 + Cheshire DNA MER1_type 2054 2151 -269 * 1582 180 6 38 chrX 45635109 45635453 -131338687 + MER49 LTR ERV1 177 509 -414 1755 158 37 0 chrX 45635526 45635798 -131338342 - AluSx SINE Alu -30 282 1 2088 119 25 0 chrX 45635799 45636119 -131338021 + MER1A DNA MER1_type 100 427 -102 24 0 0 0 chrX 45636397 45636421 -131337719 + AT_rich Low_complexity Low_complexity 1 24 0 376 226 168 0 chrX 45636434 45636571 -131337569 + MER53 DNA DNA 30 189 0 1764 141 11 25 chrX 45636620 45636935 -131337205 + AluSx SINE Alu 3 313 0 236 261 45 0 chrX 45637169 45637257 -131336883 - MLT1J LTR MaLR -34 477 386 681 247 31 49 chrX 45638798 45639021 -131335119 + MIR SINE MIR 8 226 -36 605 311 53 82 chrX 45639440 45639483 -131334657 + L1MEd LINE L1 858 901 -5515 381 22 0 0 chrX 45639483 45639529 -131334611 + (CA)n Simple_repeat Simple_repeat 2 47 0 605 311 53 82 chrX 45639529 45640010 -131334130 + L1MEd LINE L1 901 1367 -5049 274 231 19 37 chrX 45640012 45640120 -131334020 + L1MEd LINE L1 1226 1331 -5095 228 348 113 39 chrX 45640306 45640800 -131333340 - L2 LINE L2 -2225 1089 559 2386 264 79 18 chrX 45641903 45642879 -131331261 + L1PB1 LINE L1 12 1046 -5817 7935 178 36 2 chrX 45642883 45645692 -131328448 + L1PB1 LINE L1 1094 4137 -2725 2447 93 31 83 chrX 45645699 45646119 -131328021 - MER48 LTR ERV1 0 398 1 1328 82 0 0 chrX 45646119 45646302 -131327838 - HERVH48 LTR ERV1 0 6654 6472 * 29834 38 13 1 chrX 45646290 45650101 -131324039 - HERVH48 LTR ERV1 -988 5666 1809 7194 62 7 15 chrX 45650110 45651236 -131322904 - HERVH48 LTR ERV1 -5464 1190 1 2485 120 30 33 chrX 45651237 45651636 -131322504 - MER48 LTR ERV1 0 398 1 7218 180 38 7 chrX 45651641 45653913 -131320227 + L1PB1 LINE L1 4146 6521 -346 1053 127 0 0 chrX 45653913 45654079 -131320061 + (TA)n Simple_repeat Simple_repeat 1 166 0 7218 180 38 7 chrX 45654079 45654437 -131319703 + L1PB1 LINE L1 6521 6866 -1 23 33 0 0 chrX 45654437 45654467 -131319673 + AT_rich Low_complexity Low_complexity 1 30 0 5603 113 0 18 chrX 45654589 45654628 -131319512 - L1PA8 LINE L1 -16 6156 6118 261 0 0 0 chrX 45654628 45654657 -131319483 + (TA)n Simple_repeat Simple_repeat 1 29 0 5603 113 0 18 chrX 45654657 45655620 -131318520 - L1PA8 LINE L1 -54 6118 5126 1810 130 0 8 chrX 45655889 45656142 -131317998 + AluSg SINE Alu 53 303 -7 4602 252 36 4 chrX 45656149 45657587 -131316553 + L1M2 LINE L1 2723 4231 -2617 180 0 0 0 chrX 45657587 45657607 -131316533 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4602 252 36 4 chrX 45657607 45657806 -131316334 + L1M2 LINE L1 4231 4422 -2426 1456 289 30 27 chrX 45657807 45658316 -131315824 - L1PA15-16 LINE L1 -4712 2137 1631 1335 211 20 14 chrX 45658316 45658610 -131315530 - AluJo SINE Alu -16 296 1 1456 289 30 27 chrX 45658610 45659182 -131314958 - L1PA15-16 LINE L1 -5218 1631 899 1700 292 47 15 chrX 45659363 45660306 -131313834 - L1M4 LINE L1 -1550 4596 3624 4614 241 38 16 chrX 45660309 45661512 -131312628 + L1M1 LINE L1 17 1246 -6319 3213 132 12 6 chrX 45661512 45662020 -131312120 + MER9 LTR ERVK 1 511 0 3810 92 11 21 chrX 45662020 45662594 -131311546 + HERVK9 LTR ERVK 1 568 -5348 * 25674 82 2 1 chrX 45662592 45666078 -131308062 + HERVK9 LTR ERVK 1424 4915 -1001 4132 103 0 0 chrX 45666072 45666664 -131307476 + HERVK9 LTR ERVK 5043 5634 -282 * 2012 64 8 0 chrX 45666759 45667026 -131307114 + HERVK9 LTR ERVK 5635 5903 -13 3362 120 10 8 chrX 45667036 45667546 -131306594 + MER9 LTR ERVK 1 511 0 10410 196 33 45 chrX 45667546 45669159 -131304981 + L1M1 LINE L1 1239 2870 -4695 1849 125 8 0 chrX 45669159 45669423 -131304717 - AluSg1 SINE Alu -43 266 1 10410 196 33 45 chrX 45669423 45669887 -131304253 + L1M1 LINE L1 2870 3338 -4227 2164 128 3 3 chrX 45669887 45670184 -131303956 + AluSc SINE Alu 1 297 -12 10410 196 33 45 chrX 45670184 45671413 -131302727 + L1M1 LINE L1 3338 4516 -3049 12405 154 31 12 chrX 45671429 45673790 -131300350 + L1PB1 LINE L1 1 2407 -4456 8593 183 32 6 chrX 45673798 45675581 -131298559 + L1PB1 LINE L1 3768 5503 -1379 249 83 0 0 chrX 45675581 45675617 -131298523 + (CA)n Simple_repeat Simple_repeat 2 37 0 8593 183 32 6 chrX 45675617 45676838 -131297302 + L1PB1 LINE L1 5503 5138 -1744 7710 88 9 9 chrX 45676838 45677909 -131296231 - MER11C LTR ERVK 0 1071 1 8593 183 32 6 chrX 45677909 45679702 -131294438 + L1PB1 LINE L1 5137 6882 0 10328 144 15 23 chrX 45679712 45681789 -131292351 + L1PA8 LINE L1 9 2075 -4386 14634 134 11 14 chrX 45681789 45685008 -131289132 + L1PA8 LINE L1 3247 6472 -15 486 75 0 0 chrX 45685008 45685075 -131289065 + (CA)n Simple_repeat Simple_repeat 2 68 0 3005 121 29 13 chrX 45685094 45685621 -131288519 + L1MA2 LINE L1 5770 6304 0 386 357 34 11 chrX 45685730 45685999 -131288141 - L1 LINE L1 -2517 3629 3355 3672 50 42 60 chrX 45686031 45687085 -131287055 - MER11A LTR ERVK 0 1266 1 402 274 110 23 chrX 45687116 45687335 -131286805 - L1 LINE L1 -2889 3257 3020 13246 200 43 15 chrX 45687336 45687535 -131286605 - L1PA13 LINE L1 -4 6159 5967 222 91 0 0 chrX 45687535 45687568 -131286572 + (TG)n Simple_repeat Simple_repeat 2 34 0 13246 200 43 15 chrX 45687568 45691633 -131282507 - L1PA13 LINE L1 -196 5967 1793 2006 297 18 29 chrX 45691638 45692905 -131281235 + L1PBa LINE L1 601 1643 -5220 333 0 0 0 chrX 45692949 45692986 -131281154 + (TA)n Simple_repeat Simple_repeat 2 38 0 199 0 0 61 chrX 45693081 45693114 -131281026 + (TTA)n Simple_repeat Simple_repeat 3 33 0 8682 241 27 14 chrX 45693125 45697463 -131276677 + L1PB3 LINE L1 238 4685 -1518 3765 142 49 65 chrX 45697504 45698273 -131275867 + LTR1 LTR ERV1 29 785 0 5338 157 11 14 chrX 45698273 45699554 -131274586 + L1PB3 LINE L1 4671 5954 -257 1905 141 0 18 chrX 45699554 45699838 -131274302 + AluSx SINE Alu 1 279 -33 243 0 0 0 chrX 45699839 45699866 -131274274 + (CA)n Simple_repeat Simple_repeat 2 28 0 5338 157 11 14 chrX 45699866 45700124 -131274016 + L1PB3 LINE L1 5953 6211 0 971 179 73 0 chrX 45700133 45700321 -131273819 + L1MB2 LINE L1 5699 5907 -264 207 0 0 0 chrX 45700321 45700344 -131273796 + (CAA)n Simple_repeat Simple_repeat 2 24 0 971 179 73 0 chrX 45700344 45700373 -131273767 + L1MB2 LINE L1 5907 5932 -239 980 214 0 0 chrX 45700377 45700550 -131273590 + AluJb SINE Alu 85 257 -55 310 192 13 13 chrX 45700576 45700654 -131273486 + L1MC3 LINE L1 5865 5942 -2053 327 25 0 0 chrX 45700654 45700694 -131273446 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 204 49 17 chrX 45700706 45700994 -131273146 - MLT2D LTR ERVL -48 366 64 657 0 0 0 chrX 45700994 45701067 -131273073 + (TA)n Simple_repeat Simple_repeat 2 74 0 1423 204 49 17 chrX 45701067 45701126 -131273014 - MLT2D LTR ERVL -350 64 8 2358 198 138 52 chrX 45701128 45701258 -131272882 + L1MC3 LINE L1 5948 6065 -1720 1578 177 40 82 chrX 45701258 45701660 -131272480 + MLT1B LTR MaLR 4 388 -2 2358 198 138 52 chrX 45701660 45702143 -131271997 + L1MC3 LINE L1 6065 6655 -1130 282 29 0 0 chrX 45702143 45702178 -131271962 + (TG)n Simple_repeat Simple_repeat 2 36 0 2358 198 138 52 chrX 45702178 45702403 -131271737 + L1MC3 LINE L1 6655 6859 -926 3090 180 62 83 chrX 45703995 45704797 -131269343 - LTR1 LTR ERV1 0 785 1 5453 34 0 1 chrX 45704863 45705512 -131268628 - L1PA3 LINE L1 -4 6151 5504 39093 50 24 5 chrX 45706677 45712714 -131261426 + L1PA4 LINE L1 3 6155 0 31 0 0 0 chrX 45712730 45712761 -131261379 + AT_rich Low_complexity Low_complexity 1 31 0 4008 227 44 29 chrX 45712763 45715365 -131258775 + L1M1 LINE L1 23 2501 -5064 8453 136 54 12 chrX 45715374 45715991 -131258149 + L1PBa LINE L1 1120 1710 -5152 1991 131 10 30 chrX 45715991 45716296 -131257844 + AluSx SINE Alu 1 299 -13 8453 136 54 12 chrX 45716296 45717638 -131256502 + L1PBa LINE L1 1710 3303 -3559 13247 70 5 10 chrX 45717645 45719481 -131254659 + L1P LINE L1 1 1828 -4318 24 32 0 0 chrX 45721000 45721031 -131253109 + AT_rich Low_complexity Low_complexity 1 31 0 2469 274 128 38 chrX 45721323 45722351 -131251789 + L2 LINE L2 1740 2860 -454 312 167 13 51 chrX 45722357 45722435 -131251705 - MER116 DNA Mariner -5 75 1 319 321 20 4 chrX 45722437 45722560 -131251580 + L2 LINE L2 2861 2983 -289 476 291 19 75 chrX 45722652 45722920 -131251220 - MLT1J2 LTR MaLR 0 450 198 1130 214 19 12 chrX 45722952 45723274 -131250866 - MER33 DNA MER1_type 0 324 1 258 345 7 22 chrX 45723283 45723422 -131250718 - MLT1J1 LTR MaLR -272 174 38 487 239 17 34 chrX 45723507 45723683 -131250457 - L1MD3 LINE L1 -915 7080 6908 2281 113 0 0 chrX 45723683 45723983 -131250157 - AluSg SINE Alu -10 300 1 3051 218 99 39 chrX 45724001 45724721 -131249419 - L1MD3 LINE L1 -743 5403 4728 2132 131 0 0 chrX 45724721 45725018 -131249122 - AluSc SINE Alu -12 297 1 3051 218 99 39 chrX 45725018 45725323 -131248817 - L1MD3 LINE L1 -1418 4728 5432 2253 110 3 0 chrX 45725323 45725622 -131248518 - AluSp SINE Alu 0 313 14 3051 218 99 39 chrX 45725622 45725937 -131248203 - L1MD3 LINE L1 -713 5433 5138 5113 131 18 50 chrX 45725972 45727267 -131246873 - L1PB2 LINE L1 0 6151 4885 436 105 11 11 chrX 45727270 45727365 -131246775 + (TA)n Simple_repeat Simple_repeat 1 95 0 1176 32 0 0 chrX 45727366 45727520 -131246620 - L1PA5 LINE L1 -831 5315 5162 6946 47 1 0 chrX 45727520 45728359 -131245781 + L1PA5 LINE L1 5304 6147 -7 4669 206 21 25 chrX 45728585 45730191 -131243949 + L1PA15 LINE L1 3912 5503 -662 1690 213 0 0 chrX 45730191 45730501 -131243639 + AluJb SINE Alu 1 310 -2 4669 206 21 25 chrX 45730501 45731117 -131243023 + L1PA15 LINE L1 5503 6120 -45 2821 175 18 8 chrX 45731109 45732164 -131241976 + L1M1 LINE L1 4745 5814 -486 * 239 220 0 34 chrX 45732656 45732715 -131241425 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 271 201 56 154 chrX 45736849 45737083 -131237057 + Charlie8 DNA MER1_type 70 280 -2137 1364 304 22 33 chrX 45737203 45738083 -131236057 - L2 LINE L2 -5 3308 2440 511 248 101 46 chrX 45738091 45738329 -131235811 + HERVL40 LTR ERVL 606 856 -4674 2847 7 0 0 chrX 45739177 45739486 -131234654 + AluYb8 SINE Alu 1 309 -9 665 236 0 29 chrX 45739966 45740140 -131234000 + L1MEd LINE L1 37 205 -5914 806 338 126 19 chrX 45740241 45740396 -131233744 + L2 LINE L2 2652 2789 -524 4039 165 83 24 chrX 45740396 45741396 -131232744 + MER106B DNA MER1_type 1 1059 0 806 338 126 19 chrX 45741396 45741838 -131232302 + L2 LINE L2 2789 3313 0 253 250 17 42 chrX 45742481 45742601 -131231539 + L1MC/D LINE L1 5703 5819 -1989 838 273 104 16 chrX 45743426 45743858 -131230282 - MLT1L LTR MaLR -3 612 143 267 326 139 30 chrX 45743922 45744189 -131229951 - MLT1K LTR MaLR -146 442 147 870 269 29 7 chrX 45744396 45744675 -131229465 - L1ME3A LINE L1 -177 5993 5709 355 188 59 0 chrX 45744691 45744776 -131229364 - L1MA10 LINE L1 -1 6333 6244 13026 40 2 0 chrX 45745204 45747555 -131226585 + L1PA4 LINE L1 3800 6152 -3 21 0 0 0 chrX 45747979 45748000 -131226140 + AT_rich Low_complexity Low_complexity 1 21 0 250 216 0 0 chrX 45748208 45748259 -131225881 + L2 LINE L2 3263 3313 0 230 220 0 0 chrX 45748675 45748725 -131225415 + G-rich Low_complexity Low_complexity 4 53 0 339 203 68 127 chrX 45752564 45752800 -131221340 + MER102b DNA MER1_type 70 291 -50 1301 311 18 32 chrX 45752920 45753803 -131220337 - L2 LINE L2 -5 3308 2440 629 229 82 0 chrX 45753811 45753994 -131220146 + HERVL40 LTR ERVL 606 803 -4727 11960 209 39 41 chrX 45753994 45755695 -131218445 + HERVL40 LTR ERVL 1016 2707 -2823 2123 120 24 27 chrX 45755695 45756071 -131218069 + THE1C LTR MaLR 1 375 0 11960 209 39 41 chrX 45756071 45757299 -131216841 + HERVL40 LTR ERVL 2707 3937 -1593 2898 212 113 11 chrX 45757304 45758285 -131215855 - L1MB8 LINE L1 -6 6172 5106 2465 143 0 5 chrX 45758288 45758674 -131215466 - L1PA15 LINE L1 -2 6163 5780 7066 164 7 2 chrX 45758727 45761164 -131212976 - L1PB1 LINE L1 0 6867 4421 2110 168 20 43 chrX 45761170 45761610 -131212530 - LTR3 LTR ERVK -2 430 1 16510 112 18 2 chrX 45761610 45764157 -131209983 - HERVK3 LTR ERVK 0 7243 4657 1339 90 0 0 chrX 45764148 45764336 -131209804 - HERVK3 LTR ERVK -2937 4306 4119 * 11952 119 37 10 chrX 45764323 45767131 -131207009 - HERVK3 LTR ERVK -4333 2910 38 2211 170 7 37 chrX 45767150 45767579 -131206561 - LTR3 LTR ERVK -16 416 1 5090 199 69 3 chrX 45767580 45768069 -131206071 - L1PB1 LINE L1 -2437 4425 3970 260 100 0 20 chrX 45768069 45768119 -131206021 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 5090 199 69 3 chrX 45768119 45769821 -131204319 - L1PB1 LINE L1 -2892 3970 2080 * 28375 116 17 58 chrX 45769801 45776213 -131197927 - L1PA7 LINE L1 -3 6151 12 957 115 23 0 chrX 45776226 45776400 -131197740 - L1PB1 LINE L1 -4756 2107 1930 1310 13 7 0 chrX 45776404 45776557 -131197583 - L1PA2 LINE L1 -10 6145 5992 2754 19 0 0 chrX 45776557 45776882 -131197258 + L1P1 LINE L1 5425 5749 -406 3007 182 77 7 chrX 45776891 45778544 -131195596 - L1PB1 LINE L1 -4946 1917 1 2805 141 21 11 chrX 45778567 45779123 -131195017 - L1P4 LINE L1 -392 6424 5863 593 282 31 14 chrX 45779120 45779407 -131194733 - L1P LINE L1 -3180 2966 2675 * 25056 81 8 2 chrX 45779417 45782971 -131191169 + L1P LINE L1 11 3587 -2559 209 164 36 0 chrX 45783007 45783062 -131191078 + (TA)n Simple_repeat Simple_repeat 1 57 0 14324 209 57 11 chrX 45783074 45788294 -131185846 - L1P4 LINE L1 -1329 5468 1 4669 205 20 25 chrX 45788313 45788962 -131185178 - L1PA15 LINE L1 -13 6152 5501 1690 213 0 0 chrX 45788962 45789272 -131184868 - AluJb SINE Alu -2 310 1 4669 205 20 25 chrX 45789272 45790878 -131183262 - L1PA15 LINE L1 -664 5501 3912 6654 47 1 0 chrX 45791104 45791947 -131182193 - L1PA5 LINE L1 -7 6147 5304 1176 32 0 0 chrX 45791943 45792097 -131182043 + L1PA5 LINE L1 5162 5315 -831 * 436 105 11 11 chrX 45792098 45792193 -131181947 + (TA)n Simple_repeat Simple_repeat 2 96 0 5113 131 18 50 chrX 45792196 45793491 -131180649 + L1PB2 LINE L1 4885 6151 0 3051 218 99 39 chrX 45793526 45793841 -131180299 + L1MD3 LINE L1 5138 5433 -713 2253 110 3 0 chrX 45793841 45794140 -131180000 + AluSp SINE Alu 14 313 0 3051 218 99 39 chrX 45794140 45794445 -131179695 + L1MD3 LINE L1 5433 4729 -1417 2132 131 0 0 chrX 45794445 45794742 -131179398 + AluSc SINE Alu 1 297 -12 3051 218 99 39 chrX 45794742 45795462 -131178678 + L1MD3 LINE L1 4728 5403 -743 2281 113 0 0 chrX 45795480 45795780 -131178360 + AluSg SINE Alu 1 300 -10 487 239 17 34 chrX 45795780 45795956 -131178184 + L1MD3 LINE L1 6908 7080 -915 258 345 7 22 chrX 45796041 45796180 -131177960 + MLT1J1 LTR MaLR 38 174 -272 1130 214 19 12 chrX 45796189 45796511 -131177629 + MER33 DNA MER1_type 1 324 0 476 291 19 75 chrX 45796543 45796811 -131177329 + MLT1J2 LTR MaLR 198 450 0 319 321 20 4 chrX 45796903 45797026 -131177114 - L2 LINE L2 -289 2983 2861 312 167 13 51 chrX 45797028 45797106 -131177034 + MER116 DNA Mariner 1 75 -5 2469 274 128 38 chrX 45797112 45798140 -131176000 - L2 LINE L2 -454 2860 1740 24 32 0 0 chrX 45798432 45798463 -131175677 + AT_rich Low_complexity Low_complexity 1 31 0 448 249 17 70 chrX 45803560 45803801 -131170339 + MER102a DNA MER1_type 98 325 -5 1086 292 18 30 chrX 45803884 45804462 -131169678 - L2 LINE L2 -115 3198 2633 345 314 128 50 chrX 45804486 45804963 -131169177 + L1M4 LINE L1 4820 5333 -813 336 321 52 38 chrX 45805028 45805240 -131168900 + L2 LINE L2 3097 3311 -2 3341 171 10 15 chrX 45805461 45806063 -131168077 - MER7C DNA MER2_type 0 602 4 1223 227 62 16 chrX 45806091 45806604 -131167536 + LTR40a LTR ERVL 44 515 -4 407 309 72 11 chrX 45806624 45806805 -131167335 + HERVL40 LTR ERVL 20 211 -5319 2196 278 84 19 chrX 45806834 45808026 -131166114 + HERVL40 LTR ERVL 1252 2552 -2978 847 117 73 0 chrX 45808043 45808222 -131165918 - L1MA7 LINE L1 0 6291 6100 678 263 23 55 chrX 45809404 45809621 -131164519 - MER63A DNA MER1_type 0 210 1 2159 109 14 0 chrX 45810319 45810613 -131163527 + AluSx SINE Alu 3 300 -12 17100 127 75 12 chrX 45811163 45811980 -131162160 + L1PA3 LINE L1 4 768 -5701 1904 155 6 28 chrX 45811980 45812297 -131161843 - AluSp SINE Alu -3 310 1 17100 127 75 12 chrX 45812297 45813218 -131160922 + L1PA3 LINE L1 768 1630 -4839 2144 110 0 14 chrX 45813218 45813510 -131160630 + AluY SINE Alu 1 288 -23 432 0 0 0 chrX 45813510 45813558 -131160582 + (CA)n Simple_repeat Simple_repeat 2 49 0 17100 127 75 12 chrX 45813558 45817123 -131157017 + L1PA3 LINE L1 1629 5790 -679 4608 104 5 0 chrX 45817144 45817809 -131156331 - L1PA7 LINE L1 -13 6141 5474 4562 76 2 0 chrX 45817809 45818408 -131155732 + L1PA3 LINE L1 5865 6467 -3 222 37 0 0 chrX 45818411 45818438 -131155702 + (A)n Simple_repeat Simple_repeat 1 27 0 23408 68 3 2 chrX 45818439 45821645 -131152495 - L1P LINE L1 -2938 3208 1 15850 110 10 2 chrX 45821646 45824311 -131149829 - L1PA7 LINE L1 -679 5475 2792 311 155 0 0 chrX 45824310 45824368 -131149772 - L1PA7 LINE L1 -4507 1639 1582 * 9861 116 7 2 chrX 45824368 45825826 -131148314 + HERVL-A2 LTR ERVL 1062 2526 -3128 * 17639 97 25 0 chrX 45825825 45828354 -131145786 + HERVL-A2 LTR ERVL 3064 5654 0 1805 170 63 31 chrX 45828354 45828892 -131145248 + MLT2A2 LTR ERVL 1 554 0 283 347 22 22 chrX 45829261 45829480 -131144660 + L1 LINE L1 439 1955 -5254 330 374 44 18 chrX 45829532 45829872 -131144268 + L1PBb LINE L1 57 405 -5799 1849 277 66 32 chrX 45829988 45830313 -131143827 + L1PBb LINE L1 401 713 -5490 2074 132 3 0 chrX 45830313 45830602 -131143538 + AluSx SINE Alu 12 301 -11 270 0 0 0 chrX 45830602 45830632 -131143508 + (TA)n Simple_repeat Simple_repeat 2 31 0 1849 277 66 32 chrX 45830632 45832003 -131142137 + L1PBb LINE L1 712 2135 -4068 19978 132 13 30 chrX 45832063 45836675 -131137465 + L1PA7 LINE L1 1 4629 -1832 6531 104 20 7 chrX 45836676 45838399 -131135741 + L1PA7 LINE L1 4726 6461 -8 1731 260 53 6 chrX 45838421 45839098 -131135042 + L1 LINE L1 3186 3894 -3314 19002 167 24 39 chrX 45839101 45842755 -131131385 + L1PA11 LINE L1 10 3717 -2772 2104 137 0 28 chrX 45842755 45843077 -131131063 + AluSq SINE Alu 1 313 0 19002 167 24 39 chrX 45843077 45844141 -131129999 + L1PA11 LINE L1 3717 4795 -1694 13661 63 64 1 chrX 45844141 45846635 -131127505 + L1PA6 LINE L1 3597 6147 -7 19002 167 24 39 chrX 45846635 45848445 -131125695 + L1PA11 LINE L1 4795 6464 -25 2825 191 12 11 chrX 45848443 45849082 -131125058 + L1P3 LINE L1 4829 5468 -993 * 4838 255 89 25 chrX 45849088 45852477 -131121663 + L1PA15-16 LINE L1 1809 5451 -1398 3800 99 2 0 chrX 45852479 45853032 -131121108 + L1PA12 LINE L1 5572 6125 -43 519 242 0 0 chrX 45853048 45853564 -131120576 + (TA)n Simple_repeat Simple_repeat 1 516 0 360 289 0 0 chrX 45853577 45853667 -131120473 + L1MC4 LINE L1 6614 6703 -1339 * 366 267 0 0 chrX 45853599 45853689 -131120451 - L1MC4 LINE L1 -1339 6703 6614 494 199 6 17 chrX 45853723 45853904 -131120236 + (TA)n Simple_repeat Simple_repeat 1 179 0 280 274 0 21 chrX 45853911 45854006 -131120134 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 3441 164 67 27 chrX 45854016 45855306 -131118834 + L1MA4A LINE L1 4748 6097 -206 388 233 0 0 chrX 45855332 45855418 -131118722 + AluJ/FRAM SINE Alu 217 302 0 1073 185 15 0 chrX 45855470 45855675 -131118465 + L1PB3 LINE L1 5947 6154 0 427 182 31 10 chrX 45855772 45855887 -131118253 + L1M LINE L1 5282 5403 -766 23181 50 2 0 chrX 45856013 45859768 -131114372 + L1PA4 LINE L1 2368 6154 -1 5138 118 26 33 chrX 45859772 45859848 -131114292 + L1MA3 LINE L1 2448 2523 -5042 2092 130 7 0 chrX 45859848 45860148 -131113992 + AluSx SINE Alu 1 302 -10 5138 118 26 33 chrX 45860148 45861062 -131113078 + L1MA3 LINE L1 2523 3431 -4134 4723 162 22 24 chrX 45861059 45861295 -131112845 + L1MA3 LINE L1 5698 5933 -1791 * 2087 116 0 0 chrX 45861295 45861572 -131112568 + AluSx SINE Alu 1 277 -35 243 0 0 0 chrX 45861573 45861600 -131112540 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 330 26 0 0 chrX 45861599 45861638 -131112502 + (TA)n Simple_repeat Simple_repeat 1 39 0 4723 162 22 24 chrX 45861600 45862869 -131111271 + L1MA3 LINE L1 5933 7163 -561 920 28 0 0 chrX 45862869 45862975 -131111165 + L1PA3 LINE L1 6044 6152 -3 4723 162 22 24 chrX 45862975 45863097 -131111043 + L1MA3 LINE L1 7163 7284 -440 457 295 119 0 chrX 46063099 46063292 -130910848 - LTR16C LTR ERVL -12 479 264 33252 65 3 8 chrX 46064360 46068962 -130905178 + L1PA8A LINE L1 739 5323 -808 2225 109 7 0 chrX 46068962 46069255 -130904885 + AluSx SINE Alu 1 295 -17 33252 65 3 8 chrX 46069255 46069429 -130904711 + L1PA8A LINE L1 5323 5496 -635 7257 47 1 2 chrX 46069551 46071058 -130903082 + L1PA5 LINE L1 4649 6154 0 8735 181 21 1 chrX 46071060 46074009 -130900131 + L1MA3 LINE L1 3303 6305 0 4298 153 53 43 chrX 46074004 46074533 -130899607 + L1MA8 LINE L1 5281 5803 -488 * 189 0 0 0 chrX 46074533 46074554 -130899586 + (CA)n Simple_repeat Simple_repeat 2 22 0 4298 153 53 43 chrX 46074554 46074924 -130899216 + L1MA8 LINE L1 5803 6194 -97 455 33 16 0 chrX 46074924 46074985 -130899155 + (TA)n Simple_repeat Simple_repeat 2 63 0 4298 153 53 43 chrX 46074985 46075085 -130899055 + L1MA8 LINE L1 6194 6291 0 2048 114 0 0 chrX 46075497 46075805 -130898335 - AluSg SINE Alu 0 308 1 21 0 0 0 chrX 46075805 46075826 -130898314 + AT_rich Low_complexity Low_complexity 1 21 0 1967 202 44 26 chrX 46076360 46076856 -130897284 - MLT1D LTR MaLR 0 505 1 1949 141 0 24 chrX 46077036 46077334 -130896806 - AluSx SINE Alu -21 291 1 1768 175 31 33 chrX 46078040 46078496 -130895644 + LTR56 LTR ERV1 9 437 0 2576 50 0 0 chrX 46081010 46081308 -130892832 + AluY SINE Alu 1 298 -13 317 303 64 52 chrX 46081632 46082126 -130892014 + LTR56-int LTR ERV1 368 4267 -2824 180 0 0 0 chrX 46083615 46083635 -130890505 + (T)n Simple_repeat Simple_repeat 1 20 0 468 228 0 0 chrX 46084514 46084628 -130889512 + (TA)n Simple_repeat Simple_repeat 2 115 0 873 129 0 0 chrX 46085347 46085486 -130888654 + (TA)n Simple_repeat Simple_repeat 1 139 0 259 203 24 49 chrX 46085913 46086036 -130888104 + LTR56-int LTR ERV1 5721 5840 -918 627 258 19 50 chrX 46086077 46086337 -130887803 + LTR56-int LTR ERV1 4787 5038 -85 1785 197 28 14 chrX 46086466 46086902 -130887238 + LTR56 LTR ERV1 4 445 0 417 305 40 20 chrX 46088183 46088334 -130885806 + MIR3 SINE MIR 21 174 -34 192 345 126 0 chrX 46088423 46088510 -130885630 + L2 LINE L2 3183 3280 -33 216 0 0 0 chrX 46088608 46088632 -130885508 + (A)n Simple_repeat Simple_repeat 1 24 0 4393 19 0 0 chrX 46090801 46091407 -130882733 - L1PA2 LINE L1 -372 5783 5178 3165 8 0 0 chrX 46091407 46091808 -130882332 + L1PA2 LINE L1 5795 6196 0 41548 42 1 2 chrX 46091961 46098083 -130876057 + L1PA4 LINE L1 39 6154 -1 222 336 19 47 chrX 46098113 46098220 -130875920 + MIR3 SINE MIR 94 197 -11 235 273 28 63 chrX 46098565 46098708 -130875432 + MER117 DNA MER1_type 48 185 -12 3429 89 2 2 chrX 46098891 46099364 -130874776 - L1PA8 LINE L1 -14 6158 5686 319 376 64 6 chrX 46099649 46099822 -130874318 + L2 LINE L2 2872 3054 -218 21 0 0 0 chrX 46100042 46100063 -130874077 + AT_rich Low_complexity Low_complexity 1 21 0 398 353 0 0 chrX 46100344 46100460 -130873680 - L2 LINE L2 0 3272 3157 367 312 32 8 chrX 46100618 46100743 -130873397 - MIR SINE MIR -87 175 48 1284 106 32 9 chrX 46100868 46101085 -130873055 - L1MA4A LINE L1 0 6303 6082 441 155 126 0 chrX 46101085 46101188 -130872952 + L1MA4A LINE L1 5941 6056 -247 17822 173 33 14 chrX 46101350 46105862 -130868278 + L1MA1 LINE L1 12 4437 -3284 2256 105 3 13 chrX 46105862 46106192 -130867948 + AluSp SINE Alu 1 313 0 17822 173 33 14 chrX 46106192 46106966 -130867174 + L1MA1 LINE L1 4437 5195 -2526 1919 63 0 8 chrX 46106966 46107217 -130866923 + L1PA5 LINE L1 5903 6154 0 17822 173 33 14 chrX 46107217 46109493 -130864647 + L1MA1 LINE L1 5195 7721 0 13170 175 21 23 chrX 46109521 46114383 -130859757 + L1P3 LINE L1 10 4856 -1605 2634 7 0 0 chrX 46114383 46114715 -130859425 + L1PA2 LINE L1 5841 6174 0 13170 175 21 23 chrX 46114715 46114880 -130859260 + L1P3 LINE L1 4856 5020 -1441 6578 191 19 30 chrX 46114874 46115112 -130859028 + L1PA15 LINE L1 2983 3222 -2943 * 12132 136 7 10 chrX 46115112 46117906 -130856234 + L1PA10 LINE L1 3365 6163 -5 6578 191 19 30 chrX 46117906 46120308 -130853832 + L1PA15 LINE L1 3222 6157 -8 226 175 18 18 chrX 46120511 46120568 -130853572 + L1MC4 LINE L1 7985 8041 -1 24 53 0 0 chrX 46120897 46120935 -130853205 + AT_rich Low_complexity Low_complexity 1 38 0 426 287 122 18 chrX 46121082 46121320 -130852820 + MLT1I LTR MaLR 140 448 -2 14180 87 7 10 chrX 46121544 46124356 -130849784 - L1PA7 LINE L1 -13 6141 3336 394 278 78 74 chrX 46125119 46125247 -130848893 - L1MC4a LINE L1 -1868 5940 5814 2486 47 3 0 chrX 46125247 46125547 -130848593 - AluY SINE Alu -10 301 1 394 278 78 74 chrX 46125547 46125727 -130848413 - L1MC4a LINE L1 -1994 5814 5631 232 273 171 11 chrX 46125860 46125948 -130848192 - MIR SINE MIR 0 262 161 241 161 143 0 chrX 46125956 46126012 -130848128 + HsTC2 DNA Tc2 1 64 -1834 * 788 110 8 31 chrX 46125987 46126114 -130848026 + MER46A DNA MER2_type 112 235 -1 497 326 29 0 chrX 46126138 46126276 -130847864 - MIR SINE MIR -108 154 13 231 260 90 10 chrX 46126350 46126450 -130847690 + L1ME4a LINE L1 5984 6091 -30 732 189 105 34 chrX 46126455 46126751 -130847389 - L1MC5 LINE L1 -36 7925 7609 289 216 54 83 chrX 46126767 46129071 -130845069 - L1MD2 LINE L1 -10 7787 5583 * 508 179 94 9 chrX 46129068 46129174 -130844966 + L1MC4 LINE L1 6627 6741 -1301 1106 216 45 48 chrX 46129235 46129568 -130844572 - L1MC5 LINE L1 -381 7580 7249 23 0 0 0 chrX 46129694 46129717 -130844423 + AT_rich Low_complexity Low_complexity 1 23 0 837 167 0 7 chrX 46130063 46130201 -130843939 + MLT1A1 LTR MaLR 229 365 0 3168 157 19 19 chrX 46130566 46131195 -130842945 + L1MA4 LINE L1 5671 6299 -1 338 340 32 6 chrX 46131295 46131400 -130842740 - MIR SINE MIR -44 218 106 2019 126 0 3 chrX 46131400 46131693 -130842447 + AluJb SINE Alu 1 292 -20 338 340 32 6 chrX 46131693 46131743 -130842397 - MIR SINE MIR -156 106 59 271 301 82 5 chrX 46131782 46131988 -130842152 + L1ME3 LINE L1 5726 5947 -215 22 56 0 0 chrX 46132020 46132056 -130842084 + AT_rich Low_complexity Low_complexity 1 36 0 774 298 70 38 chrX 46132356 46132997 -130841143 - L1ME4a LINE L1 -90 6031 5347 1234 146 9 5 chrX 46133037 46133257 -130840883 - L1MA4 LINE L1 -9 6291 6071 184 273 0 36 chrX 46133278 46133333 -130840807 + MIR SINE MIR 17 69 -193 236 242 0 81 chrX 46134638 46134700 -130839440 + MIR SINE MIR 172 228 -34 730 224 104 37 chrX 46134897 46135138 -130839002 + MIR SINE MIR 1 257 -5 999 248 44 0 chrX 46135433 46135683 -130838457 + MER58 DNA MER1_type 3 263 -2157 267 345 35 0 chrX 46135695 46135782 -130838358 + MLT1J LTR MaLR 334 423 -88 6852 64 12 1 chrX 46136567 46138065 -130836075 - L1PA8 LINE L1 -5 6167 4664 562 106 11 43 chrX 46138065 46138159 -130835981 - L1P LINE L1 -1238 4908 4818 5123 257 99 19 chrX 46138196 46141481 -130832659 + L1MB8 LINE L1 8 3582 -3062 1729 114 42 4 chrX 46141484 46141746 -130832394 + AluSx SINE Alu 41 312 0 4952 255 42 37 chrX 46141793 46144649 -130829491 + L1MB8 LINE L1 3807 6676 0 1374 257 36 64 chrX 46144903 46145576 -130828564 + L1M4 LINE L1 3742 4395 -1751 430 194 0 0 chrX 46145589 46145661 -130828479 - Tigger1 DNA MER2_type -2317 101 30 254 286 33 0 chrX 46145734 46145825 -130828315 + L1MB5 LINE L1 3342 3435 -2711 2230 37 0 0 chrX 46145825 46146094 -130828046 + L1PA3 LINE L1 5887 6155 0 3641 252 42 20 chrX 46146187 46147405 -130826735 + L1MB5 LINE L1 3729 4973 -1173 1342 236 52 31 chrX 46147405 46147824 -130826316 + MSTC LTR MaLR 1 428 0 2805 234 67 141 chrX 46147826 46147871 -130826269 + MSTC-int LTR MaLR 2 49 -1686 2516 107 26 0 chrX 46147871 46148254 -130825886 + L1PA10 LINE L1 5767 6159 -9 2805 234 67 141 chrX 46148254 46148430 -130825710 + MSTC-int LTR MaLR 49 237 -1498 5163 45 0 0 chrX 46148430 46149051 -130825089 + L1PA5 LINE L1 5530 6150 -4 2805 234 67 141 chrX 46149051 46150235 -130823905 + MSTC-int LTR MaLR 237 1303 -432 5131 226 18 18 chrX 46150310 46151932 -130822208 + L1PA13 LINE L1 1163 2789 -4008 3676 96 50 4 chrX 46151932 46152476 -130821664 - L1PA11 LINE L1 0 6174 5606 5131 226 18 18 chrX 46152476 46152537 -130821603 + L1PA13 LINE L1 2789 2849 -3948 1461 129 42 0 chrX 46152608 46152849 -130821291 + L1PA15 LINE L1 5909 6159 -6 1984 202 35 4 chrX 46152873 46153328 -130820812 + L1MB5 LINE L1 5694 6162 -12 436 350 79 10 chrX 46153682 46153885 -130820255 - MIR SINE MIR -37 225 9 2401 178 39 26 chrX 46153962 46154502 -130819638 - MER11A LTR ERVK 0 1266 720 183 333 115 13 chrX 46154530 46154608 -130819532 + L2 LINE L2 3137 3222 -50 320 261 63 9 chrX 46154905 46155016 -130819124 + MER5B DNA MER1_type 51 167 -11 * 591 308 37 28 chrX 46155007 46155221 -130818919 + L2 LINE L2 3093 3308 -5 297 219 14 0 chrX 46155258 46155331 -130818809 + L1M LINE L1 5319 5392 -786 2942 211 36 28 chrX 46155480 46156192 -130817948 + L1MB7 LINE L1 5330 6047 -137 3861 245 55 42 chrX 46158863 46159352 -130814788 - L1PA13 LINE L1 -5796 991 510 2360 78 7 3 chrX 46159352 46159660 -130814480 - AluY SINE Alu -2 309 1 3861 245 55 42 chrX 46159660 46160143 -130813997 - L1PA13 LINE L1 -6277 510 6 2961 174 18 0 chrX 46160158 46160716 -130813424 - L1PB4 LINE L1 -326 5830 5263 3060 209 27 15 chrX 46160720 46161449 -130812691 + L1PB4 LINE L1 4506 5243 -903 4533 177 29 17 chrX 46162510 46163429 -130810711 - L1MA7 LINE L1 -29 6262 5333 5341 124 13 13 chrX 46163557 46164256 -130809884 - L1PA13 LINE L1 0 6163 5486 2002 130 3 0 chrX 46164256 46164541 -130809599 + AluSp SINE Alu 1 286 -27 5341 124 13 13 chrX 46164541 46164859 -130809281 - L1PA13 LINE L1 -676 5487 5170 3547 179 30 1 chrX 46164860 46165552 -130808588 - L1PA13 LINE L1 -1036 5110 4399 526 161 0 0 chrX 46165559 46165646 -130808494 + L1MA4 LINE L1 4089 4175 -1971 276 234 0 0 chrX 46165675 46165739 -130808401 + L1PB4 LINE L1 6068 6131 -25 313 204 57 34 chrX 46165747 46165835 -130808305 - L1MC4 LINE L1 -1339 6703 6614 684 139 46 6 chrX 46165849 46166022 -130808118 + (TA)n Simple_repeat Simple_repeat 1 180 0 327 146 0 0 chrX 46166034 46166089 -130808051 + (TG)n Simple_repeat Simple_repeat 2 56 0 873 209 6 0 chrX 46166098 46166275 -130807865 + L1M1 LINE L1 5442 5619 -681 5160 192 24 12 chrX 46166334 46168408 -130805732 + L1MA4 LINE L1 4195 6294 -6 295 106 21 0 chrX 46168428 46168475 -130805665 - MER92A LTR ERV1 -84 328 281 2957 138 27 8 chrX 46168518 46169045 -130805095 - L1MA3 LINE L1 0 6305 5769 4923 167 19 22 chrX 46169046 46170212 -130803928 - L1PA13 LINE L1 -5 6158 4985 25286 31 2 2 chrX 46170212 46174063 -130800077 - L1PA2 LINE L1 -3 6152 2301 12348 159 46 33 chrX 46174165 46174585 -130799555 + L1 LINE L1 1236 1649 -5916 612 81 0 0 chrX 46174585 46174672 -130799468 + (GA)n Simple_repeat Simple_repeat 2 88 0 12348 159 46 33 chrX 46174672 46177572 -130796568 + L1 LINE L1 1649 4729 -2836 33058 77 4 5 chrX 46177572 46182053 -130792087 + L1P LINE L1 1 4476 -1670 21760 49 49 3 chrX 46182153 46184971 -130789169 - L1P LINE L1 -3198 2948 4 2109 206 43 12 chrX 46184968 46185458 -130788682 - L1PA13 LINE L1 -1147 4999 4495 * 1626 178 47 25 chrX 46185458 46185823 -130788317 + THE1C LTR MaLR 1 373 -2 7786 154 70 40 chrX 46185846 46187359 -130786781 + THE1-int LTR MaLR 21 1580 0 4453 105 9 0 chrX 46187374 46188007 -130786133 + L1PA10 LINE L1 5470 6162 -6 909 123 14 0 chrX 46188007 46188151 -130785989 + L1PA10 LINE L1 6019 6166 -2 1818 243 28 33 chrX 46188173 46188773 -130785367 + L1 LINE L1 5744 6340 -1225 * 23945 86 1 6 chrX 46188769 46192070 -130782070 + L1PA4 LINE L1 2 3286 -2860 12739 43 1 0 chrX 46192070 46194417 -130779723 + L1PA4 LINE L1 3813 6155 0 186 43 0 0 chrX 46194513 46194536 -130779604 + (A)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chrX 46194572 46194611 -130779529 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chrX 46194830 46194859 -130779281 + AT_rich Low_complexity Low_complexity 1 29 0 14905 146 17 105 chrX 46194922 46198347 -130775793 + L1P LINE L1 12 3132 -3014 6716 67 19 2 chrX 46198347 46199670 -130774470 + L1PA7 LINE L1 4815 6154 0 342 267 51 106 chrX 46199674 46199700 -130774440 + L1M4 LINE L1 3520 3546 -2600 1929 144 7 10 chrX 46199700 46200005 -130774135 - AluSx SINE Alu -3 309 6 342 267 51 106 chrX 46200005 46200251 -130773889 + L1M4 LINE L1 3546 3777 -2369 194 36 83 60 chrX 46200279 46200363 -130773777 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 272 144 48 29 chrX 46200398 46200502 -130773638 + (TTATA)n Simple_repeat Simple_repeat 2 107 0 374 262 101 7 chrX 46200518 46200667 -130773473 + L1ME3A LINE L1 4888 5050 -1096 322 216 52 90 chrX 46200667 46200801 -130773339 - MLT1H LTR MaLR 0 549 421 321 298 83 66 chrX 46200844 46201091 -130773049 - MLT1I LTR MaLR -197 212 33 247 254 0 0 chrX 46201114 46201173 -130772967 + L1ME3A LINE L1 5051 5109 -1037 350 229 305 0 chrX 46201288 46201419 -130772721 + L1ME3A LINE L1 5348 5518 -644 * 968 245 28 56 chrX 46201413 46201768 -130772372 + L1ME3A LINE L1 5820 6164 -6 1453 161 0 0 chrX 46201848 46202072 -130772068 - AluJb SINE Alu -19 293 70 272 278 26 9 chrX 46202082 46202197 -130771943 + L1M4 LINE L1 3829 3945 -2201 359 333 0 16 chrX 46202559 46202688 -130771452 - MER94 DNA DNA -3 131 5 2766 194 27 20 chrX 46202799 46203247 -130770893 - L1MC3 LINE L1 -21 7764 7310 1639 214 82 10 chrX 46203247 46203648 -130770492 + MSTB1 LTR MaLR 1 430 -2 2766 194 27 20 chrX 46203648 46203798 -130770342 - L1MC3 LINE L1 -475 7310 7162 * 13532 40 4 1 chrX 46203796 46205469 -130768671 - L1PA4 LINE L1 -850 5296 3619 6976 40 1 2 chrX 46205442 46206289 -130767851 + L1PA4 LINE L1 5310 6155 0 * 257 316 20 41 chrX 46206372 46206470 -130767670 + MIR SINE MIR 56 151 -57 23 33 0 0 chrX 46206557 46206587 -130767553 + AT_rich Low_complexity Low_complexity 1 30 0 440 242 0 0 chrX 46206587 46206678 -130767462 - L1MC3 LINE L1 -615 7170 7080 229 251 146 18 chrX 46206914 46207085 -130767055 - L1 LINE L1 -1672 4474 4282 350 69 0 35 chrX 46207175 46207233 -130766907 - MLT2A1 LTR ERVL 0 444 389 37 0 0 0 chrX 46207233 46207270 -130766870 + AT_rich Low_complexity Low_complexity 1 37 0 445 38 119 6 chrX 46207270 46207430 -130766710 + (TA)n Simple_repeat Simple_repeat 2 179 0 340 92 99 0 chrX 46207442 46207684 -130766456 + (TA)n Simple_repeat Simple_repeat 1 266 0 570 202 34 0 chrX 46207684 46207803 -130766337 + FRAM SINE Alu 43 165 -11 246 214 143 0 chrX 46207846 46207930 -130766210 - L1MC4 LINE L1 -1330 6712 6617 * 253 289 22 0 chrX 46207859 46207949 -130766191 + L1MC4 LINE L1 6614 6705 -1337 326 73 0 36 chrX 46207953 46208008 -130766132 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 270 239 0 22 chrX 46208009 46208101 -130766039 + L1MC4 LINE L1 6614 6703 -1339 257 247 0 43 chrX 46208073 46208166 -130765974 - L1MC4 LINE L1 -1339 6703 6615 * 230 232 0 63 chrX 46208116 46208211 -130765929 + L1MC4 LINE L1 6615 6703 -1339 * 648 244 0 0 chrX 46208224 46208404 -130765736 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 186 34 0 chrX 46208408 46208467 -130765673 + (TATATG)n Simple_repeat Simple_repeat 6 66 0 253 267 0 22 chrX 46208467 46208557 -130765583 + L1MC4 LINE L1 6614 6701 -1341 230 255 0 43 chrX 46208525 46208619 -130765521 - L1MC4 LINE L1 -1339 6703 6614 * 233 217 22 43 chrX 46208640 46208732 -130765408 + L1MC4 LINE L1 6614 6703 -1339 253 98 0 0 chrX 46208734 46208775 -130765365 - MLT2A1 LTR ERVL -44 400 360 203 194 0 0 chrX 46208775 46208811 -130765329 + (TA)n Simple_repeat Simple_repeat 2 37 0 3174 65 0 2 chrX 46208812 46209210 -130764930 - MLT2A1 LTR ERVL -45 399 3 17335 74 3 2 chrX 46209212 46212468 -130761672 - HERVL-A1 LTR ERVL 0 5654 2401 753 82 0 0 chrX 46212483 46212581 -130761559 - MLT2A1 LTR ERVL -346 98 1 17557 79 41 6 chrX 46212627 46214956 -130759184 - HERVL-A1 LTR ERVL -3242 2412 2 348 77 0 154 chrX 46214957 46215022 -130759118 - MLT2A2 LTR ERVL 0 453 390 244 156 0 0 chrX 46214999 46215044 -130759096 + LTR66 LTR ERVL 394 438 -172 * 231 167 0 0 chrX 46215044 46215086 -130759054 + (CA)n Simple_repeat Simple_repeat 1 42 0 3200 79 2 0 chrX 46215087 46215490 -130758650 - MLT2A1 LTR ERVL -40 404 1 324 0 0 0 chrX 46216659 46216695 -130757445 + (CA)n Simple_repeat Simple_repeat 2 37 0 498 124 0 0 chrX 46219597 46219686 -130754454 + (TG)n Simple_repeat Simple_repeat 2 90 0 30 27 0 0 chrX 46219724 46219761 -130754379 + AT_rich Low_complexity Low_complexity 1 37 0 452 310 26 15 chrX 46220196 46220334 -130753806 - MIR SINE MIR -67 141 20 1329 93 27 67 chrX 46221134 46221359 -130752781 - L1MD1 LINE L1 -16 6226 6011 4532 123 15 0 chrX 46221359 46222014 -130752126 + L1MA4 LINE L1 5617 6299 -1 668 250 54 5 chrX 46222015 46222199 -130751941 - L1M4 LINE L1 -1284 4862 4670 2304 115 0 0 chrX 46222820 46223132 -130751008 + AluSq SINE Alu 1 312 -1 3365 89 27 18 chrX 46223453 46223902 -130750238 + MLT2A2 LTR ERVL 1 453 0 283 290 47 0 chrX 46224713 46224820 -130749320 + MIR SINE MIR 98 209 -53 2154 89 43 0 chrX 46225111 46225391 -130748749 - AluSc SINE Alu -13 296 5 383 235 80 93 chrX 46225836 46226138 -130748002 + L1ME LINE L1 5526 5823 -298 246 340 37 16 chrX 46226297 46226488 -130747652 + HAL1 LINE L1 1332 1526 -981 1694 171 0 48 chrX 46226513 46226823 -130747317 - AluJo SINE Alu -15 297 3 341 275 49 0 chrX 46226826 46226968 -130747172 + L1ME4a LINE L1 2869 3017 -3129 17036 35 0 0 chrX 46226975 46229665 -130744475 - L1PA4 LINE L1 0 6155 3469 16107 41 6 0 chrX 46229665 46231636 -130742504 + L1P LINE L1 1452 3434 -2712 228 296 84 30 chrX 46231720 46231830 -130742310 + L1ME4a LINE L1 3099 3202 -2944 4291 145 49 1 chrX 46231830 46232546 -130741594 + L1MA4 LINE L1 5546 6295 -5 228 296 84 30 chrX 46232546 46232770 -130741370 + L1ME4a LINE L1 3202 3451 -2695 590 280 123 50 chrX 46232898 46233997 -130740143 + L1ME4a LINE L1 4579 5772 -349 2235 145 18 0 chrX 46233997 46234335 -130739805 - MER2 DNA MER2_type 0 344 1 590 280 123 50 chrX 46234335 46234382 -130739758 + L1ME4a LINE L1 5772 5814 -307 650 254 71 88 chrX 46234385 46234482 -130739658 + MLT2C1 LTR ERVL 1 98 -366 2269 116 143 13 chrX 46234482 46234861 -130739279 + MSTA LTR MaLR 1 428 0 650 254 71 88 chrX 46234861 46235258 -130738882 + MLT2C1 LTR ERVL 98 464 0 309 242 69 79 chrX 46235290 46235567 -130738573 + L1ME4a LINE L1 5848 6121 0 291 218 80 99 chrX 46235605 46235917 -130738223 + L1ME4a LINE L1 5816 6121 0 198 143 0 0 chrX 46238231 46238266 -130735874 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 208 303 0 15 chrX 46238515 46238581 -130735559 + GA-rich Low_complexity Low_complexity 2 66 0 442 320 63 11 chrX 46240161 46240336 -130733804 + MIR SINE MIR 20 203 -59 192 279 33 16 chrX 46241406 46241467 -130732673 + L2 LINE L2 3200 3261 -52 619 249 73 94 chrX 46241532 46241671 -130732469 - MIR SINE MIR -21 241 108 4415 137 3 2 chrX 46241671 46242312 -130731828 + L1PA15 LINE L1 5522 6163 -2 619 249 73 94 chrX 46242312 46242417 -130731723 - MIR SINE MIR -154 108 2 639 245 142 26 chrX 46242477 46242710 -130731430 - MIR SINE MIR -2 260 1 300 305 37 32 chrX 46242733 46242904 -130731236 - MIR SINE MIR -62 146 11 279 114 0 0 chrX 46243492 46243536 -130730604 + (TC)n Simple_repeat Simple_repeat 2 45 0 399 324 23 58 chrX 46243649 46243822 -130730318 - L3 LINE CR1 -12 1565 1399 610 345 36 14 chrX 46243846 46244066 -130730074 - MIR SINE MIR -33 229 5 269 383 109 8 chrX 46244045 46244301 -130729839 - L3 LINE CR1 -1062 515 234 * 999 235 28 28 chrX 46244303 46244558 -130729582 + MIR SINE MIR 6 260 -2 26 50 0 0 chrX 46245106 46245146 -130728994 + AT_rich Low_complexity Low_complexity 1 40 0 258 244 0 105 chrX 46245260 46245346 -130728794 + MER96B DNA MER1_type? 337 413 -4 276 127 0 0 chrX 46248046 46248101 -130726039 + (TC)n Simple_repeat Simple_repeat 2 56 0 492 99 0 0 chrX 46248153 46248168 -130725972 + (CA)n Simple_repeat Simple_repeat 1 86 0 492 99 0 0 chrX 46248168 46248239 -130725901 + (CA)n Simple_repeat Simple_repeat 2 72 0 229 291 0 0 chrX 46248698 46248753 -130725387 - L2 LINE L2 -80 3233 3179 426 325 81 29 chrX 46248875 46249121 -130725019 - MIR SINE MIR -3 259 1 1954 152 0 13 chrX 46249885 46250188 -130723952 - AluSx SINE Alu -12 300 2 680 246 18 11 chrX 46250258 46250450 -130723690 + MIR SINE MIR 66 259 -3 216 281 319 15 chrX 46250505 46250640 -130723500 - MIR SINE MIR -84 178 3 334 226 85 104 chrX 46250736 46250900 -130723240 + MIR SINE MIR 47 207 -55 202 292 0 0 chrX 46251109 46251157 -130722983 + L2 LINE L2 3188 3235 -37 1194 241 117 47 chrX 46251168 46251716 -130722424 + L2 LINE L2 2699 3303 -10 371 216 57 23 chrX 46253321 46253409 -130720731 + MIR SINE MIR 32 122 -86 2167 160 34 17 chrX 46253733 46254090 -130720050 + MLT1A1 LTR MaLR 1 363 -2 183 281 90 45 chrX 46254529 46254618 -130719522 - MIR3 SINE MIR -9 199 107 416 347 7 0 chrX 46255592 46255739 -130718401 - L3b LINE CR1 -141 1442 1295 1196 274 52 52 chrX 46255974 46256147 -130717993 + MLT1J LTR MaLR 13 185 -326 4083 110 49 4 chrX 46256147 46256702 -130717438 - LTR19B LTR ERV1 0 580 1 1196 274 52 52 chrX 46256702 46256987 -130717153 + MLT1J LTR MaLR 184 471 -40 727 262 65 22 chrX 46257145 46257374 -130716766 + MIR SINE MIR 3 241 -21 228 264 92 23 chrX 46257968 46258055 -130716085 - L3 LINE CR1 -124 1453 1361 428 310 39 35 chrX 46258092 46258295 -130715845 - L3 LINE CR1 -621 956 753 970 208 99 10 chrX 46258515 46258707 -130715433 - MER3 DNA MER1_type 0 209 1 349 176 148 46 chrX 46260989 46261097 -130713043 + L1MC4 LINE L1 7922 8040 -2 1759 238 43 5 chrX 46261317 46261876 -130712264 + L1ME1 LINE L1 3848 4427 -1719 614 358 24 24 chrX 46261885 46262310 -130711830 + L1MB3 LINE L1 5 429 -5712 261 0 0 0 chrX 46262619 46262648 -130711492 + (CAA)n Simple_repeat Simple_repeat 2 30 0 9002 191 53 42 chrX 46263051 46263886 -130710254 + L1MB3 LINE L1 2749 3573 -2803 378 0 0 0 chrX 46263886 46263928 -130710212 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 9002 191 53 42 chrX 46263928 46263985 -130710155 + L1MB3 LINE L1 3573 3628 -2748 2439 69 7 3 chrX 46263985 46264290 -130709850 + AluY SINE Alu 1 306 -5 9002 191 53 42 chrX 46264290 46266989 -130707151 + L1MB3 LINE L1 3628 6335 -41 1897 225 85 36 chrX 46267034 46267728 -130706412 + L1ME1 LINE L1 4450 5177 -969 * 2690 155 29 5 chrX 46267724 46268316 -130705824 + L1MA4A LINE L1 5595 6277 -26 472 191 36 0 chrX 46268321 46268431 -130705709 + L1ME1 LINE L1 5175 5288 -858 14249 178 31 36 chrX 46268441 46270322 -130703818 + L1MA4 LINE L1 14 1903 -4579 1621 117 0 5 chrX 46270322 46270545 -130703595 + AluSg/x SINE Alu 82 303 -9 14249 178 31 36 chrX 46270545 46275107 -130699033 + L1MA4 LINE L1 1903 6434 -48 2011 119 0 7 chrX 46275107 46275384 -130698756 + AluSg SINE Alu 24 298 -12 14249 178 31 36 chrX 46275384 46275422 -130698718 + L1MA4 LINE L1 6434 6471 -11 3445 202 29 42 chrX 46275430 46275651 -130698489 + L1ME1 LINE L1 5272 5494 -840 2100 136 0 13 chrX 46275651 46275952 -130698188 + AluSx SINE Alu 1 297 -15 3445 202 29 42 chrX 46275952 46276642 -130697498 + L1ME1 LINE L1 5494 6331 -3 254 312 14 14 chrX 46276691 46276832 -130697308 + L1 LINE L1 3764 3904 -2242 256 342 54 7 chrX 46276994 46277143 -130696997 - L1ME LINE L1 -463 5699 5544 2879 181 7 43 chrX 46277144 46277725 -130696415 + MER68 LTR ERV1 3 562 0 21 57 0 0 chrX 46277816 46277851 -130696289 + AT_rich Low_complexity Low_complexity 1 35 0 309 245 95 48 chrX 46277908 46278055 -130696085 - MIR3 SINE MIR -31 177 24 318 255 99 43 chrX 46278900 46279041 -130695099 - MIR SINE MIR -54 208 60 287 111 0 16 chrX 46279647 46279710 -130694430 + (TA)n Simple_repeat Simple_repeat 1 62 0 382 242 93 22 chrX 46281258 46281440 -130692700 + L1ME4a LINE L1 5749 5943 -178 449 349 53 32 chrX 46282019 46282303 -130691837 + L3 LINE CR1 930 1219 -358 312 291 38 0 chrX 46282808 46282887 -130691253 + MIR3 SINE MIR 113 194 -14 328 340 52 0 chrX 46282977 46283074 -130691066 + L2 LINE L2 3168 3269 -3 341 202 44 29 chrX 46283186 46283352 -130690788 + L1P LINE L1 5170 5341 -805 284 313 154 28 chrX 46283597 46283779 -130690361 + L3b LINE CR1 1309 1513 -70 195 220 34 34 chrX 46284047 46284106 -130690034 + MIR3 SINE MIR 126 184 -24 461 326 47 16 chrX 46284374 46284567 -130689573 - MIR3 SINE MIR -3 205 7 196 320 57 33 chrX 46284921 46285043 -130689097 + MIR SINE MIR 67 191 -71 1451 267 39 33 chrX 46285112 46285744 -130688396 - L2 LINE L2 -9 3304 2662 574 236 166 13 chrX 46285796 46285953 -130688187 - MER5A DNA MER1_type 0 189 9 214 220 20 0 chrX 46285968 46286018 -130688122 + L2 LINE L2 3221 3271 -1 844 254 0 19 chrX 46286521 46286734 -130687406 - MER3 DNA MER1_type 0 209 1 405 0 0 0 chrX 46286902 46286947 -130687193 + (TG)n Simple_repeat Simple_repeat 2 46 0 456 350 28 6 chrX 46287238 46287418 -130686722 + MER5A DNA MER1_type 6 189 0 787 252 115 0 chrX 46288534 46288752 -130685388 - MIR SINE MIR -13 249 7 216 0 0 0 chrX 46288906 46288930 -130685210 + (A)n Simple_repeat Simple_repeat 1 24 0 399 227 109 17 chrX 46290274 46290393 -130683747 - L2 LINE L2 0 3313 3184 6054 193 41 26 chrX 46291567 46293981 -130680159 + L1MB3 LINE L1 3253 5806 -378 582 85 143 79 chrX 46293957 46294146 -130679994 + L1MA7 LINE L1 6087 6287 -4 * 675 144 0 0 chrX 46294158 46294269 -130679871 + L1MB7 LINE L1 6052 6162 -22 447 279 41 76 chrX 46294806 46295003 -130679137 - L3 LINE CR1 -3 1574 1385 312 27 0 0 chrX 46295242 46295279 -130678861 + (CA)n Simple_repeat Simple_repeat 1 37 0 333 345 7 7 chrX 46295436 46295575 -130678565 + L3b LINE CR1 1230 1368 -215 250 270 11 56 chrX 46295893 46295982 -130678158 - MIR SINE MIR -70 192 108 682 253 51 63 chrX 46296050 46296287 -130677853 + MIR SINE MIR 1 234 -28 632 207 69 5 chrX 46297359 46297547 -130676593 + L1MB3 LINE L1 5984 6183 0 1876 174 3 7 chrX 46297551 46297861 -130676279 + AluJo SINE Alu 1 309 -3 348 317 10 10 chrX 46297872 46297976 -130676164 - MIR3 SINE MIR -24 184 81 613 294 110 14 chrX 46299245 46299463 -130674677 - MIR SINE MIR -4 258 20 324 317 59 0 chrX 46299483 46299584 -130674556 + L3 LINE CR1 1331 1437 -140 196 221 44 59 chrX 46300364 46300432 -130673708 + L3 LINE CR1 1504 1570 -7 358 328 35 31 chrX 46301008 46301237 -130672903 + L1M4 LINE L1 4 233 -6309 1494 256 27 45 chrX 46301580 46302139 -130672001 + L1M4 LINE L1 627 1175 -5367 443 281 16 25 chrX 46302156 46302277 -130671863 + MIR SINE MIR 34 153 -55 653 249 25 69 chrX 46302319 46302636 -130671504 + MER102b DNA MER1_type 39 341 0 213 154 0 0 chrX 46303425 46303464 -130670676 + (CA)n Simple_repeat Simple_repeat 2 40 0 233 390 48 9 chrX 46303621 46303726 -130670414 - MIR SINE MIR -62 146 38 239 245 0 0 chrX 46303966 46304019 -130670121 + MER5B DNA MER1_type 125 177 -1 196 295 0 16 chrX 46304294 46304355 -130669785 - MIR SINE MIR -119 143 84 286 263 18 35 chrX 46304744 46304858 -130669282 + GA-rich Low_complexity Low_complexity 2 113 0 187 240 140 60 chrX 46304859 46304959 -130669181 - MIR3 SINE MIR -11 197 90 240 204 20 0 chrX 46306679 46306728 -130667412 + (CA)n Simple_repeat Simple_repeat 1 50 0 372 271 48 72 chrX 46306914 46306985 -130667155 - MIR SINE MIR -41 221 150 216 0 0 0 chrX 46306985 46307009 -130667131 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2140 119 0 3 chrX 46307009 46307302 -130666838 - AluSx SINE Alu -20 292 1 372 271 48 72 chrX 46307302 46307395 -130666745 - MIR SINE MIR -110 152 60 347 328 16 8 chrX 46307563 46307688 -130666452 - L3b LINE CR1 -199 1384 1259 337 255 137 0 chrX 46308136 46308238 -130665902 - MIR3 SINE MIR -6 202 87 989 246 30 8 chrX 46308385 46308621 -130665519 - MIR SINE MIR -20 242 2 270 209 0 75 chrX 46308622 46308689 -130665451 + MIR SINE MIR 111 172 -90 324 237 68 34 chrX 46309283 46309401 -130664739 + MIR SINE MIR 106 227 -35 219 308 92 23 chrX 46310962 46311092 -130663048 - MIR SINE MIR -109 153 15 766 192 7 13 chrX 46311176 46311327 -130662813 - MER5A DNA MER1_type -39 150 1 442 259 0 52 chrX 46312163 46312215 -130661925 + MIR3 SINE MIR 67 120 -88 2393 97 0 3 chrX 46312215 46312523 -130661617 - AluSx SINE Alu -5 307 1 442 259 0 52 chrX 46312523 46312605 -130661535 + MIR3 SINE MIR 120 194 -14 317 250 52 43 chrX 46317178 46317294 -130656846 - MIR3 SINE MIR -47 161 45 248 225 60 41 chrX 46317367 46317513 -130656627 + L1MA9 LINE L1 6137 6291 0 201 326 35 0 chrX 46317915 46318001 -130656139 + MIR SINE MIR 32 120 -88 502 259 239 15 chrX 46318576 46318781 -130655359 - MIR SINE MIR 0 262 12 279 258 43 11 chrX 46318974 46319067 -130655073 + L1MC4a LINE L1 6074 6169 -1639 374 302 7 36 chrX 46320182 46320321 -130653819 + MIR3 SINE MIR 9 143 -65 210 324 49 10 chrX 46321171 46321273 -130652867 - MIR SINE MIR -67 141 36 212 341 55 0 chrX 46322897 46322988 -130651152 + MIR3 SINE MIR 85 180 -28 1847 123 119 0 chrX 46323612 46323889 -130650251 + AluSx SINE Alu 1 310 -2 217 234 28 50 chrX 46323981 46324090 -130650050 + MIR SINE MIR 49 153 -109 196 191 0 21 chrX 46324787 46324834 -130649306 - L2 LINE L2 -2 3311 3266 287 330 20 0 chrX 46325005 46325105 -130649035 + MIR3 SINE MIR 53 154 -54 217 292 0 42 chrX 46325244 46325316 -130648824 + MIR SINE MIR 124 192 -70 220 309 0 0 chrX 46326256 46326327 -130647813 + MIR SINE MIR 76 146 -62 331 303 19 12 chrX 46326658 46326820 -130647320 - MIR3 SINE MIR -43 165 3 220 232 0 152 chrX 46327151 46327263 -130646877 + MIR SINE MIR 36 130 -78 418 298 7 35 chrX 46327782 46327923 -130646217 - MIR3 SINE MIR -1 207 71 472 219 56 56 chrX 46328204 46328382 -130645758 + MER5B DNA MER1_type 1 178 0 469 359 113 31 chrX 46328489 46329071 -130645069 + L3 LINE CR1 180 809 -768 468 249 0 92 chrX 46329280 46329465 -130644675 + MER5B DNA MER1_type 8 175 -3 242 372 69 7 chrX 46329470 46329615 -130644525 + L3 LINE CR1 986 1139 -438 2435 84 3 0 chrX 46329880 46330189 -130643951 - AluSx SINE Alu -2 310 1 239 272 0 54 chrX 46330280 46330372 -130643768 + MIR SINE MIR 106 192 -70 228 309 11 21 chrX 46331912 46332006 -130642134 + GA-rich Low_complexity Low_complexity 2 94 0 183 276 67 30 chrX 46332886 46333020 -130641120 - MIR3 SINE MIR -3 205 67 216 0 0 0 chrX 46333025 46333049 -130641091 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 200 235 15 0 chrX 46336141 46336209 -130637931 + GA-rich Low_complexity Low_complexity 1 69 0 340 285 20 60 chrX 46336676 46336827 -130637313 + MIR3 SINE MIR 12 156 -52 1686 131 43 0 chrX 46336978 46337260 -130636880 + L1MB7 LINE L1 5639 5932 -252 580 259 0 0 chrX 46337260 46337391 -130636749 - MER112 DNA MER1_type -128 132 2 306 358 80 32 chrX 46337489 46337891 -130636249 + L2 LINE L2 1802 2222 -1092 225 333 59 47 chrX 46338001 46338340 -130635800 + L2 LINE L2 2261 2603 -711 370 262 69 7 chrX 46338956 46339101 -130635039 + LTR67 LTR ERVL 404 557 0 610 295 101 64 chrX 46339104 46339628 -130634512 + L2 LINE L2 2727 3272 0 318 313 0 0 chrX 46339737 46339820 -130634320 - MIR SINE MIR -92 116 34 492 225 25 19 chrX 46340026 46340186 -130633954 - L3 LINE CR1 -45 1532 1372 1248 204 8 34 chrX 46340328 46340593 -130633547 - MIR SINE MIR 0 262 5 211 352 93 14 chrX 46341381 46341597 -130632543 - MIR SINE MIR -10 252 20 193 265 0 0 chrX 46341896 46341945 -130632195 - MIR SINE MIR -157 105 57 * 509 245 123 0 chrX 46341942 46342105 -130632035 + L2 LINE L2 3131 3313 0 180 77 0 0 chrX 46342110 46342136 -130632004 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 207 194 0 0 chrX 46342956 46342992 -130631148 + (TAGG)n Simple_repeat Simple_repeat 1 36 0 312 228 38 0 chrX 46343259 46343338 -130630802 + L1MC4a LINE L1 5816 5897 -1911 522 90 0 0 chrX 46343340 46343407 -130630733 + Tigger2 DNA MER2_type 3 69 -2649 * 2766 132 14 20 chrX 46343397 46343843 -130630297 + Tigger2 DNA MER2_type 2273 2715 -3 288 276 103 0 chrX 46343847 46343992 -130630148 + L1MC4a LINE L1 5897 6056 -1752 33 25 0 0 chrX 46344021 46344061 -130630079 + AT_rich Low_complexity Low_complexity 1 40 0 201 162 27 0 chrX 46344090 46344127 -130630013 + CT-rich Low_complexity Low_complexity 5 42 0 535 295 7 0 chrX 46344181 46344330 -130629810 + MIR SINE MIR 5 154 -108 430 225 183 0 chrX 46344377 46344497 -130629643 + MIR SINE MIR 109 250 -12 306 215 86 21 chrX 46344531 46344624 -130629516 + MIR SINE MIR 82 180 -82 6565 81 21 1 chrX 46344689 46345643 -130628497 + L1PA11 LINE L1 5203 6174 0 23 0 0 0 chrX 46346045 46346068 -130628072 + AT_rich Low_complexity Low_complexity 1 23 0 441 259 39 91 chrX 46346684 46346916 -130627224 + L2 LINE L2 3094 3313 0 387 213 11 11 chrX 46348260 46348354 -130625786 + MIR SINE MIR 148 241 -21 278 295 179 6 chrX 46348491 46348647 -130625493 + MIR SINE MIR 30 212 -50 4173 115 10 0 chrX 46348647 46349248 -130624892 - L1PB3 LINE L1 0 6154 5548 1641 174 30 46 chrX 46349250 46349618 -130624522 + THE1B LTR MaLR 3 364 0 8675 172 22 19 chrX 46349618 46351268 -130622872 + THE1B-int LTR MaLR 1 1651 0 1778 154 35 49 chrX 46351268 46351637 -130622503 + THE1B LTR MaLR 1 364 0 1337 108 5 0 chrX 46351638 46351832 -130622308 - L1P5 LINE L1 -603 5551 5357 528 210 25 136 chrX 46351892 46352052 -130622088 - MIR SINE MIR 0 262 136 2078 159 26 52 chrX 46352052 46352233 -130621907 + MLT2D LTR ERVL 3 187 -227 2044 150 0 0 chrX 46352233 46352526 -130621614 - AluSx SINE Alu -19 293 1 2078 159 26 52 chrX 46352526 46352765 -130621375 + MLT2D LTR ERVL 187 412 -2 528 210 25 136 chrX 46352765 46352847 -130621293 - MIR SINE MIR -126 136 47 242 336 200 14 chrX 46352833 46353113 -130621027 + L2 LINE L2 2442 2773 -541 * 931 279 8 0 chrX 46353114 46353351 -130620789 - MIR SINE MIR -21 241 3 479 291 25 25 chrX 46353351 46353552 -130620588 + L2 LINE L2 2761 2961 -353 341 318 6 56 chrX 46354245 46354303 -130619837 - MIR SINE MIR -56 206 147 2077 204 36 46 chrX 46354303 46354772 -130619368 + MLT2B1 LTR ERVL 1 466 -54 462 36 0 0 chrX 46354772 46354828 -130619312 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 2077 204 36 46 chrX 46354828 46354883 -130619257 + MLT2B1 LTR ERVL 466 520 0 341 318 6 56 chrX 46354883 46355003 -130619137 - MIR SINE MIR -115 147 37 6210 107 4 11 chrX 46355438 46356572 -130617568 + L1PA15 LINE L1 5029 6164 -1 1642 164 71 19 chrX 46356990 46357314 -130616826 - MER58B DNA MER1_type 0 341 1 199 245 41 0 chrX 46357318 46357367 -130616773 + MIR3 SINE MIR 144 194 -14 234 231 46 92 chrX 46357608 46357738 -130616402 + L2 LINE L2 2263 2386 -928 2830 96 5 8 chrX 46357785 46358161 -130615979 - THE1C LTR MaLR 0 375 1 9022 127 15 66 chrX 46358161 46359971 -130614169 - THE1C-int LTR MaLR 0 1580 3 2463 133 11 11 chrX 46359973 46360335 -130613805 - THE1B LTR MaLR 0 364 3 1302 271 65 44 chrX 46360546 46361026 -130613114 + MLT1J LTR MaLR 3 492 -19 3227 207 86 25 chrX 46361166 46361342 -130612798 + MER97a DNA MER1_type 3 167 -727 193 29 59 0 chrX 46361342 46361376 -130612764 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3227 207 86 25 chrX 46361376 46362038 -130612102 + MER97a DNA MER1_type 167 892 -2 949 285 189 13 chrX 46362330 46362979 -130611161 + L2 LINE L2 2559 3313 0 197 340 60 33 chrX 46362955 46363105 -130611035 - MIR SINE MIR -58 204 51 * 276 280 280 8 chrX 46363526 46363658 -130610482 - MIR3 SINE MIR -8 200 33 2016 92 67 0 chrX 46364000 46364282 -130609858 - AluSp SINE Alu -12 301 1 487 268 112 17 chrX 46364382 46364561 -130609579 + MIR3 SINE MIR 7 202 -6 306 285 85 15 chrX 46366456 46366586 -130607554 - MIR SINE MIR -40 222 84 307 242 95 49 chrX 46366907 46367066 -130607074 - MIR SINE MIR -64 198 38 540 228 141 7 chrX 46367265 46367414 -130606726 + L3 LINE CR1 1391 1559 -18 495 101 76 0 chrX 46367678 46367757 -130606383 + MLT1B LTR MaLR 1 85 -305 * 1018 133 21 43 chrX 46367740 46367928 -130606212 + MLT1B LTR MaLR 207 390 0 228 259 35 0 chrX 46368008 46368066 -130606074 + L2 LINE L2 3246 3305 -8 472 167 178 63 chrX 46368076 46368250 -130605890 - L2 LINE L2 0 3313 3120 1163 290 137 17 chrX 46368300 46368766 -130605374 - LTR33A LTR ERVL 0 523 2 446 276 164 51 chrX 46368927 46369141 -130604999 + MIR SINE MIR 6 243 -19 594 280 22 22 chrX 46369374 46369556 -130604584 - MIR3 SINE MIR 0 208 27 2262 282 121 45 chrX 46369698 46371239 -130602901 - L2 LINE L2 0 3313 1653 584 247 156 7 chrX 46371274 46371428 -130602712 + MER5A DNA MER1_type 13 189 0 535 260 115 59 chrX 46371433 46371731 -130602409 - L2 LINE L2 -1696 1618 1304 1055 202 0 0 chrX 46371731 46371909 -130602231 - MER5B DNA MER1_type 0 178 1 988 317 104 50 chrX 46372042 46372689 -130601451 - L2 LINE L2 -2062 1252 571 * 1105 322 53 19 chrX 46372683 46373158 -130600982 - L2 LINE L2 -11 3302 2812 536 253 167 0 chrX 46373429 46373579 -130600561 + MER5A DNA MER1_type 9 183 -6 412 262 29 0 chrX 46374510 46374613 -130599527 + L3 LINE CR1 1432 1537 -40 216 278 206 10 chrX 46374669 46374766 -130599374 + MIR3 SINE MIR 71 186 -22 573 250 9 97 chrX 46374992 46375208 -130598932 + Charlie8 DNA MER1_type 38 234 -2183 616 168 0 0 chrX 46375455 46375550 -130598590 - MER5A DNA MER1_type -83 106 12 230 240 6 34 chrX 46375939 46376118 -130598022 + GA-rich Low_complexity Low_complexity 3 176 0 2089 126 78 28 chrX 46376159 46376516 -130597624 - THE1C LTR MaLR 0 375 1 181 273 125 23 chrX 46376543 46376631 -130597509 + MIR3 SINE MIR 109 205 -3 386 361 42 39 chrX 46376856 46377188 -130596952 + L2 LINE L2 2507 2839 -475 200 276 17 0 chrX 46377444 46377502 -130596638 + L2 LINE L2 3210 3268 -4 667 227 33 0 chrX 46377913 46378063 -130596077 + MIR SINE MIR 87 241 -21 31587 112 12 54 chrX 46378211 46384628 -130589512 + L1PA7 LINE L1 12 6151 -3 3400 250 52 32 chrX 46385077 46386410 -130587730 - L2 LINE L2 0 3313 1955 798 203 8 93 chrX 46386805 46386987 -130587153 - MIR SINE MIR -30 232 73 414 0 0 0 chrX 46386987 46387033 -130587107 + (TAA)n Simple_repeat Simple_repeat 3 48 0 798 203 8 93 chrX 46387033 46387086 -130587054 - MIR SINE MIR -189 73 17 604 211 200 17 chrX 46387103 46387278 -130586862 + MER58C DNA MER1_type 9 215 0 2758 127 2 2 chrX 46387581 46387983 -130586157 - L1PBa LINE L1 -5405 1702 1301 * 5218 167 9 4 chrX 46387978 46389072 -130585068 - L1P4 LINE L1 -670 5491 4397 3728 158 29 27 chrX 46389071 46389547 -130584593 - L1 LINE L1 -812 5334 4855 * 2177 139 21 0 chrX 46389547 46389878 -130584262 + L1PB1 LINE L1 5814 6151 0 3728 158 29 27 chrX 46389878 46390130 -130584010 - L1 LINE L1 -1291 4855 4605 1646 222 43 53 chrX 46390137 46390623 -130583517 - L1PBa LINE L1 -6549 481 1 363 338 0 8 chrX 46391005 46391138 -130583002 + MIR SINE MIR 23 154 -108 2735 108 8 11 chrX 46391146 46391518 -130582622 + THE1C LTR MaLR 5 375 0 5862 140 74 11 chrX 46391518 46391944 -130582196 + THE1C-int LTR MaLR 1 399 -1181 2073 138 0 31 chrX 46391944 46392264 -130581876 + AluSg SINE Alu 1 310 0 5862 140 74 11 chrX 46392264 46392796 -130581344 + THE1C-int LTR MaLR 399 1019 -561 2721 88 5 11 chrX 46392792 46393168 -130580972 + THE1C-int LTR MaLR 1207 1580 0 * 770 184 126 11 chrX 46393269 46393459 -130580681 - L1MB4 LINE L1 -110 6070 5859 43152 48 11 1 chrX 46393463 46399549 -130574591 - L1PA4 LINE L1 -2 6153 1 3307 186 14 12 chrX 46399522 46399940 -130574200 - L1MB4 LINE L1 -275 5905 5489 * 1732 135 69 14 chrX 46399940 46399955 -130574185 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 46399955 46399976 -130574164 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 46399976 46400249 -130573891 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 46400249 46400712 -130573428 - L1MB4 LINE L1 -691 5489 5019 216 0 0 0 chrX 46400732 46400756 -130573384 + (A)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chrX 46400939 46400972 -130573168 + AT_rich Low_complexity Low_complexity 1 33 0 303 372 6 17 chrX 46401016 46401188 -130572952 - MIR SINE MIR -65 197 28 3741 170 36 1 chrX 46401352 46402024 -130572116 - L1MA8 LINE L1 -274 6017 5323 4988 102 7 20 chrX 46402024 46402733 -130571407 - L1PA13 LINE L1 -2 6161 5462 2314 136 26 0 chrX 46402733 46403071 -130571069 - L1PB1 LINE L1 -5 6862 6507 940 84 28 17 chrX 46403071 46403249 -130570891 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 0 0 0 chrX 46403259 46403285 -130570855 + AT_rich Low_complexity Low_complexity 1 26 0 713 67 79 0 chrX 46403285 46403449 -130570691 + (TA)n Simple_repeat Simple_repeat 2 178 0 679 73 80 0 chrX 46403463 46403764 -130570376 + (TA)n Simple_repeat Simple_repeat 1 325 0 8525 170 19 21 chrX 46403768 46404163 -130569977 - L1PB1 LINE L1 -360 6507 6113 2702 83 11 28 chrX 46404163 46404524 -130569616 - THE1A LTR MaLR 0 355 1 8525 170 19 21 chrX 46404524 46407145 -130566995 - L1PB1 LINE L1 -754 6113 1439 8929 66 4 132 chrX 46407145 46408608 -130565532 - SVA Other Other 0 1386 111 806 208 0 0 chrX 46408721 46408870 -130565270 + L1MC1 LINE L1 4060 4208 -1938 681 211 28 17 chrX 46408884 46409064 -130565076 + L1MC1 LINE L1 4145 4326 -1820 8031 34 2 0 chrX 46409097 46410274 -130563866 - L1PA3 LINE L1 -3 6152 4971 4013 34 0 0 chrX 46410274 46410743 -130563397 + L1P LINE L1 4199 4667 -1479 * 5682 204 34 15 chrX 46410738 46411196 -130562944 + L1MC1 LINE L1 4316 4764 -1569 195 42 0 0 chrX 46411196 46411220 -130562920 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5682 204 34 15 chrX 46411220 46411518 -130562622 + L1MC1 LINE L1 4764 5055 -1278 2363 64 7 14 chrX 46411518 46411815 -130562325 - AluY SINE Alu -16 295 1 5682 204 34 15 chrX 46411815 46412093 -130562047 + L1MC1 LINE L1 5055 5326 -1007 2236 160 0 24 chrX 46412093 46412467 -130561673 + MER47A DNA MER2_type 2 366 0 5682 204 34 15 chrX 46412467 46413409 -130560731 + L1MC1 LINE L1 5326 6332 -1 8437 201 17 66 chrX 46413419 46415225 -130558915 + L1 LINE L1 2 1718 -5131 1552 182 50 19 chrX 46415206 46415568 -130558572 + L1 LINE L1 4463 4835 -2013 * 11412 36 0 1 chrX 46415563 46416911 -130557229 - L1PA3 LINE L1 -1076 5070 3724 8033 31 2 1 chrX 46416913 46417990 -130556150 + L1PA3 LINE L1 5078 6155 0 5109 199 21 14 chrX 46417994 46418424 -130555716 + L1 LINE L1 4816 5242 -1606 2233 128 0 3 chrX 46418424 46418730 -130555410 + AluSc SINE Alu 1 305 -4 5109 199 21 14 chrX 46418730 46419457 -130554683 + L1 LINE L1 5242 5981 -867 2611 275 36 19 chrX 46419470 46420249 -130553891 + L1PA15 LINE L1 1 792 -5995 2862 225 31 24 chrX 46420508 46423846 -130550294 + L1PA15 LINE L1 1235 4714 -2102 1490 204 3 36 chrX 46423846 46424150 -130549990 + AluJb SINE Alu 2 295 -7 2862 225 31 24 chrX 46424150 46426269 -130547871 + L1PA15 LINE L1 4714 6816 0 3604 111 25 15 chrX 46426269 46426857 -130547283 + L1MA4A LINE L1 5274 5867 -436 657 172 16 31 chrX 46426858 46426986 -130547154 + L1P3 LINE L1 28 153 -6696 * 14061 220 35 20 chrX 46426980 46430385 -130543755 + L1MA4 LINE L1 381 3733 -3629 2110 144 0 0 chrX 46430385 46430683 -130543457 + AluSx SINE Alu 1 298 -14 14061 220 35 20 chrX 46430683 46433193 -130540947 + L1MA4 LINE L1 3733 7112 -250 2031 149 0 0 chrX 46433193 46433494 -130540646 + AluSg SINE Alu 1 301 -9 554 117 0 0 chrX 46433505 46433582 -130540558 + L1P3 LINE L1 393 469 -6380 221 56 0 28 chrX 46433582 46433618 -130540522 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 5015 43 0 0 chrX 46433618 46434205 -130539935 - L1PA4 LINE L1 -24 6131 5545 11086 129 17 12 chrX 46434205 46436288 -130537852 + L1P3 LINE L1 453 2545 -4304 * 28747 50 1 4 chrX 46436287 46439835 -130534305 - L1P LINE L1 -2600 3546 9 17794 107 83 13 chrX 46439838 46442677 -130531463 + L1P3 LINE L1 2533 5568 -1281 1431 82 68 5 chrX 46442777 46442984 -130531156 - L1P LINE L1 -5926 220 1 * 3307 186 14 12 chrX 46442957 46443375 -130530765 - L1MB4 LINE L1 -275 5905 5489 1732 135 69 14 chrX 46443375 46443390 -130530750 - AluSx SINE Alu -7 305 292 189 0 0 0 chrX 46443390 46443411 -130530729 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 135 69 14 chrX 46443411 46443684 -130530456 - AluSx SINE Alu -20 292 1 3307 186 14 12 chrX 46443684 46444147 -130529993 - L1MB4 LINE L1 -691 5489 5019 288 102 0 0 chrX 46444167 46444216 -130529924 + (A)n Simple_repeat Simple_repeat 1 49 0 640 270 39 39 chrX 46444399 46444658 -130529482 - MIR SINE MIR -3 259 1 247 327 26 35 chrX 46445284 46445397 -130528743 + L2 LINE L2 3116 3227 -45 783 297 70 4 chrX 46445529 46445758 -130528382 + MIR SINE MIR 19 262 0 338 276 150 16 chrX 46446128 46446255 -130527885 + MIR3 SINE MIR 48 191 -17 4466 224 49 41 chrX 46448038 46449613 -130524527 + L1MDb LINE L1 16 1590 -4816 947 247 39 100 chrX 46449616 46450186 -130523954 + L1 LINE L1 3468 4002 -2144 24475 46 3 77 chrX 46450287 46453804 -130520336 - L1P LINE L1 -1602 4544 1289 256 150 188 38 chrX 46453793 46453873 -130520267 - L1 LINE L1 -1697 4449 4358 * 184 196 36 54 chrX 46453910 46453966 -130520174 + MIR3 SINE MIR 123 177 -31 1035 227 50 5 chrX 46454362 46454582 -130519558 + MIR SINE MIR 3 232 -30 273 303 20 16 chrX 46454653 46454782 -130519358 + MIR SINE MIR 2 129 -79 279 319 44 37 chrX 46455291 46455426 -130518714 + L2 LINE L2 3111 3246 -26 240 344 135 6 chrX 46455464 46455627 -130518513 + MIR3 SINE MIR 2 185 -23 257 278 14 14 chrX 46455913 46455985 -130518155 + CT-rich Low_complexity Low_complexity 5 76 0 368 277 53 73 chrX 46458011 46458217 -130515923 + MIR3 SINE MIR 4 205 -3 459 286 78 41 chrX 46458260 46458481 -130515659 - MIR SINE MIR -8 254 32 1964 109 70 0 chrX 46458696 46458981 -130515159 - AluY SINE Alu -6 305 1 368 266 21 0 chrX 46459473 46459567 -130514573 + MIR SINE MIR 128 223 -39 183 310 0 17 chrX 46459692 46459750 -130514390 + MIR3 SINE MIR 4 60 -148 222 62 0 0 chrX 46459750 46459782 -130514358 + (T)n Simple_repeat Simple_repeat 1 32 0 228 296 174 0 chrX 46459782 46459897 -130514243 + MIR3 SINE MIR 67 201 -7 211 261 72 14 chrX 46460153 46460222 -130513918 - MIR3 SINE MIR -54 154 82 440 274 0 8 chrX 46460775 46460892 -130513248 - MIR SINE MIR 0 262 147 262 279 12 0 chrX 46460904 46460990 -130513150 + MIR SINE MIR 173 259 -3 215 214 0 0 chrX 46461198 46461240 -130512900 - MIR SINE MIR -105 157 116 263 341 48 24 chrX 46461255 46461381 -130512759 + MIR SINE MIR 20 148 -114 2248 137 62 11 chrX 46461560 46461917 -130512223 - THE1C LTR MaLR 0 375 1 10278 121 8 54 chrX 46461917 46463573 -130510567 - THE1C-int LTR MaLR 0 1580 1 2467 119 13 46 chrX 46463573 46463961 -130510179 - THE1C LTR MaLR 0 375 1 185 300 191 36 chrX 46464002 46464112 -130510028 - MIR SINE MIR -113 149 23 306 241 102 102 chrX 46464452 46464717 -130509423 - LTR38 LTR ERV1 0 556 292 249 239 15 30 chrX 46464848 46464915 -130509225 - LTR38 LTR ERV1 -362 194 129 389 189 123 28 chrX 46465008 46465114 -130509026 - LTR38B LTR ERV1 -494 116 1 333 198 21 73 chrX 46465426 46465522 -130508618 + MLT1C LTR MaLR 8 98 -369 1590 141 44 28 chrX 46465523 46465863 -130508277 - MER4A LTR ERV1 0 664 261 602 152 0 10 chrX 46465863 46465962 -130508178 - MER4A LTR ERV1 -566 98 1 7116 109 39 47 chrX 46465975 46466944 -130507196 - MER4A-int LTR ERV1 -3 6595 5637 1887 154 10 3 chrX 46466944 46467243 -130506897 - AluSq SINE Alu -12 301 1 7116 109 39 47 chrX 46467243 46467497 -130506643 - MER4A-int LTR ERV1 -961 5637 5382 257 271 47 47 chrX 46467548 46467655 -130506485 + MIR3 SINE MIR 99 205 -3 452 302 47 27 chrX 46469606 46469755 -130504385 - MIR3 SINE MIR -19 189 38 302 315 144 9 chrX 46470713 46470824 -130503316 + MIR SINE MIR 20 145 -117 185 189 27 0 chrX 46470866 46470903 -130503237 + L2 LINE L2 3214 3251 -21 575 268 32 22 chrX 46471109 46471302 -130502838 + MIR SINE MIR 20 212 -50 22 80 0 0 chrX 46472283 46472333 -130501807 + AT_rich Low_complexity Low_complexity 1 50 0 1796 133 65 22 chrX 46472816 46472948 -130501192 - MLT1C LTR MaLR -129 338 213 321 100 0 0 chrX 46472948 46472998 -130501142 + (TG)n Simple_repeat Simple_repeat 2 51 0 1796 133 65 22 chrX 46472998 46473189 -130500951 - MLT1C LTR MaLR -254 213 1 438 309 75 67 chrX 46473197 46473731 -130500409 + L2 LINE L2 2224 2761 -553 214 277 0 0 chrX 46474006 46474053 -130500087 + L2 LINE L2 3261 3307 -6 251 246 69 13 chrX 46474607 46474712 -130499428 - MIR SINE MIR -72 136 48 557 274 8 0 chrX 46475044 46475168 -130498972 + MIR SINE MIR 19 143 -119 492 269 43 7 chrX 46475169 46475310 -130498830 - L2 LINE L2 0 3313 3168 208 341 24 0 chrX 46475314 46475396 -130498744 + MIR SINE MIR 158 241 -21 779 282 13 18 chrX 46476096 46476323 -130497817 + MIR SINE MIR 8 233 -29 181 248 54 46 chrX 46476342 46476445 -130497695 + MIR SINE MIR 88 190 -72 324 48 0 0 chrX 46476700 46476742 -130497398 + (CA)n Simple_repeat Simple_repeat 2 43 0 831 269 47 28 chrX 46477234 46477487 -130496653 - MIR SINE MIR 0 262 5 623 259 27 32 chrX 46477792 46477977 -130496163 - MIR SINE MIR -14 248 65 1849 175 147 0 chrX 46477977 46478331 -130495809 - MSTB LTR MaLR 0 426 21 221 136 0 91 chrX 46478333 46478377 -130495763 - MIR SINE MIR -201 61 22 477 242 36 36 chrX 46478448 46478613 -130495527 - MIR SINE MIR -3 259 95 359 195 0 65 chrX 46478653 46478730 -130495410 + L1MC3 LINE L1 7070 7141 -644 5703 15 2 5 chrX 46478738 46479355 -130494785 - L1PA4 LINE L1 -3 6152 5538 208 273 0 0 chrX 46479382 46479426 -130494714 - MIR SINE MIR -169 93 50 191 256 154 13 chrX 46479463 46479541 -130494599 + L2 LINE L2 2624 2712 -602 1187 269 115 17 chrX 46479602 46480123 -130494017 - L2 LINE L2 -420 2894 2323 204 224 163 0 chrX 46480495 46480544 -130493596 - MIR SINE MIR 0 262 206 546 331 12 6 chrX 46480581 46480750 -130493390 - MIR SINE MIR -46 216 47 658 210 11 85 chrX 46480792 46480968 -130493172 + MER5B DNA MER1_type 11 173 -5 334 313 0 0 chrX 46481503 46481583 -130492557 + MIR SINE MIR 66 145 -63 589 189 0 143 chrX 46481669 46481691 -130492449 - MIR SINE MIR -12 250 226 2113 169 40 80 chrX 46481691 46482217 -130491923 - MLT1D LTR MaLR 0 505 1 589 189 0 143 chrX 46482217 46482369 -130491771 - MIR SINE MIR -36 226 101 228 219 50 59 chrX 46482431 46482550 -130491590 - MLT1L LTR MaLR -8 607 490 314 247 0 26 chrX 46482567 46482644 -130491496 - MLT1J LTR MaLR -193 318 244 632 247 137 26 chrX 46482909 46482927 -130491213 - Charlie8 DNA MER1_type -2130 287 272 2357 114 0 0 chrX 46482927 46483235 -130490905 + AluSx SINE Alu 1 308 -4 632 247 137 26 chrX 46483235 46483443 -130490697 - Charlie8 DNA MER1_type -2145 272 36 243 234 149 11 chrX 46483500 46483594 -130490546 + MIR SINE MIR 40 146 -62 278 50 25 0 chrX 46484809 46484849 -130489291 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 217 0 61 0 chrX 46485218 46485251 -130488889 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2174 122 3 34 chrX 46485532 46485852 -130488288 + AluSx SINE Alu 1 310 -2 395 350 49 6 chrX 46486123 46486286 -130487854 - MIR SINE MIR -39 223 54 250 333 117 0 chrX 46486448 46486568 -130487572 - L2 LINE L2 -227 3045 2912 2421 141 8 24 chrX 46486654 46487024 -130487116 - THE1B LTR MaLR 0 364 1 10607 107 12 6 chrX 46487024 46488497 -130485643 - THE1B-int LTR MaLR 0 1580 99 1096 117 0 0 chrX 46488498 46488652 -130485488 - THE1B-int LTR MaLR -1426 154 1 2149 137 17 17 chrX 46488652 46489002 -130485138 - THE1B LTR MaLR 0 364 15 271 281 72 16 chrX 46489010 46489150 -130484990 - MIR SINE MIR -64 144 32 246 323 30 38 chrX 46489777 46489910 -130484230 - MIR SINE MIR -43 219 88 333 181 83 0 chrX 46490030 46490102 -130484038 - L1ME1 LINE L1 -5 6161 6084 454 271 52 5 chrX 46490246 46490394 -130483746 - L1ME1 LINE L1 -87 6077 5929 205 211 0 0 chrX 46490503 46490541 -130483599 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 191 306 0 16 chrX 46491486 46491548 -130482592 + MIR3 SINE MIR 10 70 -138 192 293 17 0 chrX 46491652 46491710 -130482430 + MIR3 SINE MIR 123 181 -27 1646 122 0 4 chrX 46491886 46492124 -130482016 + MER96B DNA MER1_type? 1 237 -180 808 272 5 20 chrX 46492253 46492455 -130481685 + MIR SINE MIR 8 206 -56 1202 172 36 8 chrX 46492800 46493050 -130481090 - L1MA4 LINE L1 -9 6291 6035 * 7302 74 12 0 chrX 46493042 46494722 -130479418 - L1PA7 LINE L1 -6 6148 4455 20006 28 0 0 chrX 46494826 46497830 -130476310 + L1PA3 LINE L1 3150 6152 -3 23 0 0 0 chrX 46497830 46497853 -130476287 + AT_rich Low_complexity Low_complexity 1 23 0 4920 158 27 20 chrX 46497853 46499433 -130474707 + L1MA8 LINE L1 4441 6037 -254 360 205 0 48 chrX 46499433 46499516 -130474624 - AluJ/FRAM SINE Alu 0 302 224 1033 179 6 6 chrX 46499521 46499694 -130474446 + MER58B DNA MER1_type 169 341 0 423 276 99 70 chrX 46500215 46500458 -130473682 - MIR SINE MIR 0 262 13 782 240 22 6 chrX 46500548 46500731 -130473409 - MIR SINE MIR -7 255 70 355 277 126 0 chrX 46501259 46501378 -130472762 - MIR3 SINE MIR -9 199 66 362 314 44 22 chrX 46502774 46502911 -130471229 - MIR3 SINE MIR -63 145 6 1659 249 40 15 chrX 46502988 46503531 -130470609 - L1M4 LINE L1 -2682 3464 2908 611 248 119 47 chrX 46503532 46503810 -130470330 - L2 LINE L2 -42 3271 2974 444 221 15 23 chrX 46503864 46503995 -130470145 - LTR55 LTR ERV -7 541 412 2473 173 25 2 chrX 46504005 46504555 -130469585 + L1MA9 LINE L1 5632 6290 -22 4054 224 35 44 chrX 46504600 46505001 -130469139 - L1ME2 LINE L1 -49 6926 6523 304 111 0 0 chrX 46505001 46505046 -130469094 - U5 snRNA snRNA -71 45 1 4054 224 35 44 chrX 46505046 46506433 -130467707 - L1ME2 LINE L1 -452 6523 5118 489 143 0 0 chrX 46506434 46506518 -130467622 + MLT2B3 LTR ERVL 1 84 -470 3510 212 105 10 chrX 46506618 46507544 -130466596 + L1PB1 LINE L1 136 1149 -5714 * 9221 191 5 18 chrX 46507541 46510011 -130464129 + L1PB1 LINE L1 3856 6291 -576 339 25 0 0 chrX 46510120 46510160 -130463980 + (TA)n Simple_repeat Simple_repeat 2 41 0 2147 138 11 3 chrX 46510161 46510515 -130463625 + L1PB1 LINE L1 6510 6866 -1 287 229 19 0 chrX 46510552 46510657 -130463483 - L1ME2 LINE L1 -3182 3775 3669 2032 306 62 22 chrX 46510692 46511611 -130462529 - L1ME2 LINE L1 -5799 1060 105 436 242 39 31 chrX 46511868 46511986 -130462154 - L2 LINE L2 0 3313 3192 466 150 0 0 chrX 46511986 46512066 -130462074 + MER116 DNA Mariner 1 80 0 455 342 70 16 chrX 46512081 46512268 -130461872 + MIR SINE MIR 60 256 -6 643 128 46 0 chrX 46512656 46512765 -130461375 + MSTC LTR MaLR 1 114 -314 616 105 181 0 chrX 46512763 46512868 -130461272 + MSTC LTR MaLR 305 428 0 * 2029 65 34 0 chrX 46513064 46513327 -130460813 + AluY SINE Alu 39 310 -1 180 77 0 0 chrX 46513346 46513372 -130460768 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 906 197 6 17 chrX 46513426 46513604 -130460536 - FRAM SINE Alu 0 176 1 200 191 24 0 chrX 46513606 46513648 -130460492 + L3b LINE CR1 1373 1415 -168 585 269 99 30 chrX 46513662 46513863 -130460277 + MER58C DNA MER1_type 1 215 0 410 350 74 19 chrX 46514479 46514736 -130459404 - L3 LINE CR1 -33 1544 1274 251 372 137 4 chrX 46515203 46515429 -130458711 - L3 LINE CR1 -10 1567 1312 2103 88 0 0 chrX 46515566 46515863 -130458277 + AluY SINE Alu 40 336 0 454 332 88 18 chrX 46515863 46516089 -130458051 + L3b LINE CR1 1338 1579 -4 270 273 34 23 chrX 46516665 46516753 -130457387 - MIR SINE MIR -74 188 100 * 360 269 32 70 chrX 46516738 46516894 -130457246 + L3 LINE CR1 1392 1541 -36 747 224 145 0 chrX 46517114 46517342 -130456798 - MIR SINE MIR 0 262 2 503 310 105 13 chrX 46517997 46518236 -130455904 - MIR SINE MIR 0 262 2 200 309 128 11 chrX 46518377 46518471 -130455669 - MIR SINE MIR -55 153 49 197 237 0 0 chrX 46519180 46519218 -130454922 - MIR3 SINE MIR -31 177 140 317 259 193 104 chrX 46519305 46519652 -130454488 - L3 LINE CR1 -116 1461 1084 331 248 0 64 chrX 46519883 46519992 -130454148 + MER5A DNA MER1_type 82 183 -6 373 213 0 0 chrX 46521388 46521468 -130452672 + L1ME3A LINE L1 5764 5843 -327 526 255 174 0 chrX 46521474 46521623 -130452517 - MER5A DNA MER1_type -6 183 9 212 278 0 0 chrX 46522224 46522278 -130451862 + MIR SINE MIR 51 104 -158 * 767 304 121 36 chrX 46522271 46522686 -130451454 - L2 LINE L2 -27 3286 2837 185 197 212 15 chrX 46522694 46522760 -130451380 + MIR SINE MIR 94 172 -90 1681 190 150 12 chrX 46522854 46523454 -130450686 + L1MCa LINE L1 1945 2682 -3925 1108 92 12 0 chrX 46523451 46523624 -130450516 - L1P LINE L1 -1416 4730 4556 * 3761 173 32 5 chrX 46523729 46524510 -130449630 + L1PB4 LINE L1 5353 6154 -2 3144 243 25 53 chrX 46524516 46525317 -130448823 + L1MCa LINE L1 3045 3794 -2632 461 238 109 0 chrX 46525317 46525418 -130448722 - FLAM_A SINE Alu -18 115 4 3144 243 25 53 chrX 46525418 46525970 -130448170 + L1MCa LINE L1 3794 4360 -2066 244 222 14 28 chrX 46525959 46526031 -130448109 + L1MA1 LINE L1 8 78 -7487 * 5887 207 71 2 chrX 46526031 46527271 -130446869 + L1MA1 LINE L1 445 1769 -5796 1830 161 127 16 chrX 46527271 46527656 -130446484 - MSTA LTR MaLR 0 428 1 5361 150 5 23 chrX 46527656 46528284 -130445856 - MSTA-int LTR MaLR 0 1580 973 2050 137 39 39 chrX 46528284 46528648 -130445492 + THE1B LTR MaLR 1 364 0 5361 150 5 23 chrX 46528648 46528984 -130445156 - MSTA-int LTR MaLR -607 973 633 393 223 36 27 chrX 46528997 46529109 -130445031 + MST-int LTR MaLR 373 485 -1166 9796 174 23 11 chrX 46529127 46530798 -130443342 + L1MA1 LINE L1 1778 3427 -4138 2534 68 0 7 chrX 46530798 46531106 -130443034 + AluY SINE Alu 5 310 -1 9796 174 23 11 chrX 46531106 46531647 -130442493 + L1MA1 LINE L1 3427 3960 -3605 2265 113 0 7 chrX 46531647 46531949 -130442191 + AluSx SINE Alu 1 300 -12 9796 174 23 11 chrX 46531949 46532795 -130441345 + L1MA1 LINE L1 3960 4794 -2771 2302 166 39 10 chrX 46532795 46533210 -130440930 - MSTA LTR MaLR -1 427 1 9796 174 23 11 chrX 46533210 46534257 -130439883 + L1MA1 LINE L1 4794 5939 -1626 6474 227 35 15 chrX 46534256 46535752 -130438388 + L1PA13 LINE L1 158 1684 -5103 * 3100 92 2 0 chrX 46535750 46536208 -130437932 - L1P LINE L1 -3159 2987 2529 * 14884 119 7 23 chrX 46536204 46538557 -130435583 + L1MB7 LINE L1 2978 5285 -899 4744 203 4 39 chrX 46538557 46538613 -130435527 + L1MA1 LINE L1 6832 6888 -833 1952 143 0 26 chrX 46538613 46538921 -130435219 - AluSx SINE Alu -12 300 1 4744 203 4 39 chrX 46538921 46539785 -130434355 + L1MA1 LINE L1 6888 7721 0 14884 119 7 23 chrX 46539785 46540667 -130433473 + L1MB7 LINE L1 5285 6179 -5 279 233 43 26 chrX 46540677 46540793 -130433347 + L1MC4 LINE L1 7782 7899 -143 304 276 100 29 chrX 46541109 46541279 -130432861 - L1MC4a LINE L1 -1755 6053 5872 1702 191 67 13 chrX 46541446 46541822 -130432318 + MSTD LTR MaLR 1 396 0 1950 138 7 10 chrX 46542804 46543094 -130431046 + AluSx SINE Alu 1 289 -23 1723 110 28 24 chrX 46543521 46543812 -130430328 - THE1C LTR MaLR 0 375 84 543 100 12 0 chrX 46544101 46544181 -130429959 - THE1C LTR MaLR -294 81 1 373 327 40 0 chrX 46544230 46544331 -130429809 - MER91C DNA MER1_type -34 106 2 220 204 0 19 chrX 46544432 46544486 -130429654 + (TTATG)n Simple_repeat Simple_repeat 1 53 0 958 275 80 64 chrX 46544732 46545160 -130428980 + THE1B LTR MaLR 1 428 0 11289 110 9 0 chrX 46545160 46546726 -130427414 + THE1B-int LTR MaLR 1 1580 0 2165 138 33 25 chrX 46546726 46547087 -130427053 + THE1B LTR MaLR 1 364 0 1965 146 10 3 chrX 46547359 46547660 -130426480 - AluSx SINE Alu -9 303 1 270 0 0 0 chrX 46547687 46547717 -130426423 + (CA)n Simple_repeat Simple_repeat 1 30 0 16813 39 2 2 chrX 46548074 46550488 -130423652 - L1P1 LINE L1 -516 5639 3225 7505 27 9 0 chrX 46550488 46551886 -130422254 + L1PA3 LINE L1 4747 6152 -3 1081 262 45 16 chrX 46551907 46552289 -130421851 + L1M4 LINE L1 2351 2743 -3403 570 260 5 1 chrX 46552298 46552484 -130421656 + L1MA3 LINE L1 4235 4420 -1726 235 188 31 8 chrX 46552485 46552613 -130421527 + (TA)n Simple_repeat Simple_repeat 1 131 0 3042 195 87 21 chrX 46552614 46553497 -130420643 + L1MA3 LINE L1 4428 5368 -778 1294 131 9 5 chrX 46553475 46553697 -130420443 + L1MA3 LINE L1 5713 5935 -370 * 270 230 0 40 chrX 46553864 46553894 -130420246 + Tigger5 DNA MER2_type 1 31 -2292 22 0 0 0 chrX 46553894 46553916 -130420224 + AT_rich Low_complexity Low_complexity 1 22 0 270 230 0 40 chrX 46553916 46553938 -130420202 + Tigger5 DNA MER2_type 31 71 -2252 21 57 0 0 chrX 46553939 46553974 -130420166 + AT_rich Low_complexity Low_complexity 1 35 0 330 197 0 0 chrX 46553979 46554040 -130420100 + Tigger5 DNA MER2_type 2263 2323 0 356 276 0 0 chrX 46554123 46554199 -130419941 + MIR3 SINE MIR 81 156 -52 3195 87 19 14 chrX 46554677 46555162 -130418978 + LTR15 LTR ERV1 1 487 -6 366 312 85 23 chrX 46555187 46555375 -130418765 + MIR3 SINE MIR 5 198 -64 201 74 0 0 chrX 46555749 46555776 -130418364 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1672 161 36 13 chrX 46555778 46556083 -130418057 - AluJb SINE Alu 0 312 1 211 250 0 0 chrX 46556083 46556119 -130418021 - MIR SINE MIR -56 152 117 3282 133 68 0 chrX 46556639 46557156 -130416984 + MER41C LTR ERV1 1 552 -2 959 242 60 75 chrX 46557543 46557692 -130416448 - L2 LINE L2 -129 3184 3034 2767 117 70 32 chrX 46557692 46558163 -130415977 - LTR22B LTR ERVK -3 489 1 959 242 60 75 chrX 46558163 46558506 -130415634 - L2 LINE L2 -279 3034 2705 254 333 11 11 chrX 46558484 46558571 -130415569 - MIR SINE MIR -148 114 28 * 2215 102 3 13 chrX 46559361 46559664 -130414476 + AluY SINE Alu 1 300 -11 24 0 0 0 chrX 46559748 46559772 -130414368 + AT_rich Low_complexity Low_complexity 1 24 0 1683 129 4 4 chrX 46559784 46560055 -130414085 + L1PA16 LINE L1 5896 6166 0 2175 156 8 19 chrX 46560331 46560710 -130413430 - THE1C LTR MaLR 0 375 1 9806 121 13 30 chrX 46560710 46562301 -130411839 - THE1C-int LTR MaLR 0 1580 17 2324 127 11 19 chrX 46562328 46562706 -130411434 - THE1C LTR MaLR 0 375 1 631 240 18 72 chrX 46563430 46563614 -130410526 - MER63A DNA MER1_type -1478 210 38 2099 129 0 7 chrX 46563614 46563908 -130410232 - AluSg1 SINE Alu -17 292 1 631 240 18 72 chrX 46563908 46563944 -130410196 - MER63A DNA MER1_type -1650 38 2 324 288 45 30 chrX 46564019 46564151 -130409989 + L2 LINE L2 3177 3310 -3 4878 144 11 16 chrX 46565281 46566170 -130407970 - Tigger3b DNA MER2_type -1 1230 346 214 316 26 0 chrX 46566258 46566334 -130407806 - L2 LINE L2 -50 3263 3186 459 269 177 11 chrX 46566970 46567156 -130406984 + Charlie8 DNA MER1_type 48 264 -2153 6195 123 34 22 chrX 46567329 46568453 -130405687 + L1PA10 LINE L1 4093 5229 -917 234 91 0 0 chrX 46568453 46568486 -130405654 + (T)n Simple_repeat Simple_repeat 1 33 0 40664 34 21 1 chrX 46568490 46574520 -130399620 - L1HS LINE L1 -1 6154 1 5937 98 39 1 chrX 46574521 46575429 -130398711 + L1PA10 LINE L1 5218 6158 -10 415 367 18 18 chrX 46576272 46576441 -130397699 - MIR3 SINE MIR -6 202 34 556 188 60 0 chrX 46576652 46576769 -130397371 + MLT2B1 LTR ERVL 1 124 -396 1413 184 45 4 chrX 46576769 46577036 -130397104 + MLT1A1 LTR MaLR 88 365 0 365 69 0 17 chrX 46577202 46577260 -130396880 + (CA)n Simple_repeat Simple_repeat 2 58 0 487 246 63 14 chrX 46578048 46578190 -130395950 - MIR SINE MIR -6 256 108 285 308 116 27 chrX 46578200 46578346 -130395794 + MLT1K LTR MaLR 17 175 -413 761 204 53 98 chrX 46578546 46578831 -130395309 + MLT1K LTR MaLR 315 586 -2 776 322 50 13 chrX 46578987 46579288 -130394852 - L3 LINE CR1 -427 1150 839 1225 214 34 0 chrX 46579295 46579590 -130394550 - L1MB7 LINE L1 -64 6120 5816 4165 171 61 19 chrX 46579594 46580706 -130393434 - L1MB4 LINE L1 -1 6415 5249 2074 206 26 24 chrX 46580723 46581296 -130392844 + L1 LINE L1 2672 3245 -2901 8786 224 72 76 chrX 46581299 46582437 -130391703 - L1MB4 LINE L1 -1146 5236 4095 2275 95 3 22 chrX 46582437 46582753 -130391387 - AluSg SINE Alu 0 310 1 8786 224 72 76 chrX 46582753 46583195 -130390945 - L1MB4 LINE L1 -2287 4095 3653 985 195 63 24 chrX 46583195 46583400 -130390740 + AluJo SINE Alu 78 290 -22 8786 224 72 76 chrX 46583400 46586842 -130387298 - L1MB4 LINE L1 -2729 3653 26 2489 212 20 6 chrX 46586850 46587839 -130386301 - L1MB7 LINE L1 -354 5830 4826 4624 233 40 98 chrX 46587922 46590755 -130383385 + L1M2a LINE L1 411 3043 -4523 * 4931 113 4 13 chrX 46590752 46591514 -130382626 + L1PA15 LINE L1 5398 6152 -13 1744 258 63 11 chrX 46591521 46591535 -130382605 + L1M2a LINE L1 2729 2741 -4824 1696 203 7 19 chrX 46591535 46591845 -130382295 + AluJb SINE Alu 1 306 -6 1744 258 63 11 chrX 46591845 46592702 -130381438 + L1M2a LINE L1 2741 3626 -3939 17753 187 42 8 chrX 46592717 46597622 -130376518 + L1M1 LINE L1 19 4756 -2809 1912 146 0 0 chrX 46597622 46597897 -130376243 + AluSq SINE Alu 3 277 -36 303 28 0 0 chrX 46597902 46597938 -130376202 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 17753 187 42 8 chrX 46597938 46598476 -130375664 + L1M1 LINE L1 4759 5657 -1908 253 200 0 0 chrX 46598481 46598541 -130375599 + L1M LINE L1 6691 6750 -973 1929 112 29 4 chrX 46598542 46598818 -130375322 + AluSg SINE Alu 1 283 -27 252 0 0 0 chrX 46598821 46598849 -130375291 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1702 121 7 15 chrX 46598990 46599262 -130374878 + THE1C LTR MaLR 106 375 0 762 269 0 0 chrX 46599333 46599504 -130374636 + MER5B DNA MER1_type 1 171 -7 719 109 0 0 chrX 46599510 46599611 -130374529 - AluSg/x SINE Alu -6 304 204 198 372 11 11 chrX 46599835 46599929 -130374211 - L2 LINE L2 -211 3061 2968 461 219 152 20 chrX 46599965 46600116 -130374024 - MIR SINE MIR -48 214 44 280 304 144 23 chrX 46600193 46600456 -130373684 + L3b LINE CR1 1148 1442 -141 1175 205 86 96 chrX 46601310 46601999 -130372141 + L1MC5 LINE L1 7230 7911 -50 1998 151 10 51 chrX 46602788 46603179 -130370961 + THE1C LTR MaLR 1 375 0 2190 162 64 2 chrX 46603315 46603722 -130370418 + MSTB1 LTR MaLR 1 432 0 373 243 111 32 chrX 46604590 46604779 -130369361 - L1MC5 LINE L1 -32 7929 7726 384 314 5 0 chrX 46604835 46604945 -130369195 + MIR SINE MIR 31 146 -62 201 94 0 0 chrX 46604961 46604993 -130369147 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 305 32 0 chrX 46605080 46605175 -130368965 - MER5A DNA MER1_type -83 106 9 538 186 0 35 chrX 46605354 46605467 -130368673 - MER63B DNA MER1_type 0 436 328 575 175 135 0 chrX 46605468 46605594 -130368546 + L1MB2 LINE L1 5690 5832 -351 * 41213 46 3 2 chrX 46605593 46611740 -130362400 + L1PA3 LINE L1 2 6155 0 1797 117 21 0 chrX 46611757 46612040 -130362100 + L1MB2 LINE L1 5814 6102 -69 760 186 124 133 chrX 46612066 46612404 -130361736 - MER63B DNA MER1_type -100 336 2 287 266 101 18 chrX 46612406 46612515 -130361625 - L3b LINE CR1 -172 1411 1294 228 200 40 0 chrX 46612590 46612640 -130361500 - L2 LINE L2 0 3313 3262 454 284 63 0 chrX 46612770 46612897 -130361243 + MIR3 SINE MIR 13 147 -61 216 0 0 0 chrX 46612904 46612928 -130361212 + (CAT)n Simple_repeat Simple_repeat 1 24 0 839 199 11 31 chrX 46612931 46613122 -130361018 - MIR SINE MIR -5 257 71 232 218 18 18 chrX 46614080 46614135 -130360005 - MIR3 SINE MIR -25 183 129 202 176 0 0 chrX 46614629 46614663 -130359477 + MIR SINE MIR 109 142 -120 206 263 8 59 chrX 46614844 46614962 -130359178 + CT-rich Low_complexity Low_complexity 3 114 0 443 143 0 0 chrX 46615727 46615797 -130358343 - MLT1C LTR MaLR -32 435 366 3056 141 22 6 chrX 46615803 46616348 -130357792 + L1MA8 LINE L1 5732 6285 -6 1209 230 149 11 chrX 46617351 46617699 -130356441 + MSTD LTR MaLR 1 396 0 812 338 132 0 chrX 46618436 46618791 -130355349 - L3b LINE CR1 -75 1508 1107 322 261 21 78 chrX 46618972 46619114 -130355026 + L1ME4a LINE L1 5770 5903 -218 294 255 169 38 chrX 46619145 46619329 -130354811 + L2 LINE L2 3105 3312 -1 294 299 117 25 chrX 46619759 46619939 -130354201 - MIR3 SINE MIR -67 141 4 183 200 0 0 chrX 46620050 46620080 -130354060 - L2 LINE L2 -16 3256 3227 596 237 20 20 chrX 46620093 46620245 -130353895 - MIR SINE MIR -99 163 12 944 221 72 5 chrX 46620637 46620845 -130353295 - MIR SINE MIR -27 235 14 219 214 0 107 chrX 46620976 46621060 -130353080 - MIR SINE MIR -51 211 137 459 360 116 0 chrX 46621068 46621301 -130352839 + MIR SINE MIR 2 261 -1 295 226 16 0 chrX 46621565 46621627 -130352513 + L2 LINE L2 3209 3271 -1 287 49 24 0 chrX 46621661 46621702 -130352438 + (GA)n Simple_repeat Simple_repeat 1 42 0 191 418 66 0 chrX 46621702 46621793 -130352347 - L2 LINE L2 -64 3208 3112 192 200 0 0 chrX 46622684 46622729 -130351411 + CT-rich Low_complexity Low_complexity 1 45 0 198 167 0 0 chrX 46622745 46622781 -130351359 + (CA)n Simple_repeat Simple_repeat 2 37 0 284 312 83 0 chrX 46622819 46622928 -130351212 + MIR SINE MIR 54 171 -91 215 253 0 96 chrX 46623896 46624094 -130350046 + GA-rich Low_complexity Low_complexity 1 179 0 755 66 9 0 chrX 46624384 46624490 -130349650 + (GAAA)n Simple_repeat Simple_repeat 4 110 0 1765 150 0 4 chrX 46624914 46625167 -130348973 + AluSx SINE Alu 38 289 -23 526 288 85 0 chrX 46625679 46625856 -130348284 - MIR SINE MIR -6 256 65 2315 99 0 0 chrX 46626045 46626349 -130347791 - AluSc SINE Alu -5 304 1 224 295 0 32 chrX 46626620 46626715 -130347425 + (CGG)n Simple_repeat Simple_repeat 2 93 0 5405 138 15 7 chrX 46628041 46629002 -130345138 + L1MA3 LINE L1 5338 6305 0 483 287 6 0 chrX 46628996 46629170 -130344970 + L1MA9 LINE L1 2201 2375 -3771 * 28 29 0 0 chrX 46629243 46629278 -130344862 + AT_rich Low_complexity Low_complexity 1 35 0 733 247 16 5 chrX 46629286 46629480 -130344660 + L1PA12 LINE L1 7 202 -7379 * 785 151 0 0 chrX 46629455 46629601 -130344539 + L1 LINE L1 6120 6265 -1319 * 4740 259 36 36 chrX 46629593 46630969 -130343171 + L1PA12 LINE L1 181 2376 -5208 225 0 0 0 chrX 46630969 46630994 -130343146 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 4740 259 36 36 chrX 46630994 46631278 -130342862 + L1PA12 LINE L1 2376 2659 -4925 5613 119 25 3 chrX 46631281 46632768 -130341372 + L1PA11 LINE L1 4657 6174 0 7524 204 51 15 chrX 46632799 46635744 -130338396 + L1MA9 LINE L1 3220 6274 -38 189 213 0 0 chrX 46635785 46635832 -130338308 + (CAG)n Simple_repeat Simple_repeat 2 48 0 486 330 50 57 chrX 46635860 46636178 -130337962 - L3 LINE CR1 -1073 504 189 459 283 9 9 chrX 46636503 46636616 -130337524 + MIR3 SINE MIR 75 187 -21 1854 167 0 3 chrX 46636696 46636984 -130337156 + AluSx SINE Alu 1 287 -25 503 259 105 6 chrX 46637749 46637911 -130336229 - MIR SINE MIR -75 187 10 3829 182 47 6 chrX 46638234 46639237 -130334903 - L1MC2 LINE L1 -277 6485 5446 1155 239 55 12 chrX 46639239 46639657 -130334483 - L1MC2 LINE L1 -1370 5194 4759 37892 54 5 1 chrX 46639852 46645766 -130328374 - L1PA4 LINE L1 -1 6154 4 1900 242 22 35 chrX 46645766 46646391 -130327749 - L1MC2 LINE L1 -1763 4801 4185 3814 199 17 15 chrX 46646399 46647212 -130326928 + L1PA12 LINE L1 880 2490 -5094 1258 189 19 55 chrX 46647344 46647651 -130326489 + L1PA12 LINE L1 2445 2740 -4834 * 11442 157 19 19 chrX 46647650 46648267 -130325873 - L1PA13 LINE L1 -142 6021 5406 3520 107 0 21 chrX 46648267 46648789 -130325351 - MER9 LTR ERVK 0 511 1 11442 157 19 19 chrX 46648789 46651046 -130323094 - L1PA13 LINE L1 -757 5406 3143 231 36 0 0 chrX 46651046 46651074 -130323066 + (TG)n Simple_repeat Simple_repeat 1 28 0 11442 157 19 19 chrX 46651074 46651380 -130322760 - L1PA13 LINE L1 -3020 3143 2839 829 219 5 11 chrX 46651380 46651753 -130322387 - L1MC2 LINE L1 -3813 2751 2383 262 108 0 0 chrX 46651819 46651856 -130322284 + L1M1 LINE L1 1085 1121 -6444 1163 237 4 20 chrX 46651936 46652181 -130321959 - AluJo SINE Alu -43 269 29 669 173 81 5 chrX 46652210 46652395 -130321745 - L1MC2 LINE L1 -4185 2379 2181 16024 173 40 23 chrX 46652449 46655729 -130318411 + L1MA2 LINE L1 11 3346 -4219 10941 160 19 8 chrX 46655773 46658065 -130316075 + L1MA2 LINE L1 4412 6758 -965 1567 224 7 0 chrX 46658065 46658360 -130315780 + AluJb SINE Alu 1 297 -15 10941 160 19 8 chrX 46658360 46659337 -130314803 + L1MA2 LINE L1 6758 7723 0 2824 222 38 55 chrX 46659348 46659844 -130314296 - L1MC2 LINE L1 -4476 2088 1585 706 108 27 0 chrX 46659844 46659953 -130314187 + L1MA5 LINE L1 6181 6294 -6 2824 222 38 55 chrX 46659953 46661372 -130312768 - L1MC2 LINE L1 -4979 1585 301 39011 77 3 0 chrX 46661377 46667501 -130306639 - L1PA4 LINE L1 -4 6151 13 976 223 25 8 chrX 46667503 46667745 -130306395 - L1MC2 LINE L1 -6180 384 139 485 271 23 16 chrX 46667757 46667886 -130306254 - L2 LINE L2 -19 3294 3165 28124 115 25 55 chrX 46667903 46674259 -130299881 + L1PA7 LINE L1 1 6149 -5 274 228 57 0 chrX 46674284 46674407 -130299733 + MER113 DNA MER1_type? 85 214 -307 363 262 168 0 chrX 46674637 46674744 -130299396 - MER91C DNA MER1_type -1 139 15 675 286 83 23 chrX 46675071 46675680 -130298460 + L1MC5 LINE L1 7222 7776 -185 297 290 28 47 chrX 46675705 46675812 -130298328 + L3 LINE CR1 454 558 -1019 503 256 8 23 chrX 46675831 46675964 -130298176 + L3 LINE CR1 778 908 -669 526 281 102 0 chrX 46676108 46676275 -130297865 + MIR SINE MIR 20 203 -59 394 307 15 32 chrX 46677877 46678034 -130296106 + MIR SINE MIR 4 154 -68 185 283 0 0 chrX 46678163 46678209 -130295931 + MIR SINE MIR 105 150 -112 278 0 54 0 chrX 46678308 46678345 -130295795 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 249 272 18 23 chrX 46679321 46679409 -130294731 - MIR3 SINE MIR -19 189 100 647 296 29 19 chrX 46679734 46679940 -130294200 - MIR SINE MIR -43 219 12 333 0 0 0 chrX 46680007 46680044 -130294096 + (TC)n Simple_repeat Simple_repeat 1 37 0 296 348 6 61 chrX 46680079 46680243 -130293897 + L2 LINE L2 3116 3270 -2 298 381 0 19 chrX 46680653 46680808 -130293332 - MIR3 SINE MIR -52 156 5 237 302 39 101 chrX 46681281 46681410 -130292730 + MIR3 SINE MIR 12 132 -76 224 369 12 0 chrX 46681423 46681507 -130292633 + (CCCA)n Simple_repeat Simple_repeat 1 85 0 866 270 24 16 chrX 46681542 46681790 -130292350 + MIR SINE MIR 13 262 0 247 262 90 33 chrX 46681798 46681920 -130292220 - L2 LINE L2 -31 3282 3154 243 335 167 12 chrX 46682126 46682377 -130291763 - L2 LINE L2 -400 2914 2625 425 277 0 0 chrX 46682682 46682776 -130291364 + L2 LINE L2 2981 3074 -239 252 59 0 0 chrX 46682883 46682917 -130291223 + (TC)n Simple_repeat Simple_repeat 2 35 0 234 81 0 0 chrX 46682917 46682954 -130291186 + (CA)n Simple_repeat Simple_repeat 1 37 0 432 295 85 40 chrX 46683141 46683341 -130290799 + MIR SINE MIR 8 216 -46 1166 189 15 54 chrX 46684473 46684733 -130289407 - MIR SINE MIR -12 250 1 248 300 33 0 chrX 46685146 46685206 -130288934 - L2 LINE L2 -5 3267 3206 293 188 353 0 chrX 46685300 46685385 -130288755 + L2 LINE L2 3197 3311 -2 256 306 0 0 chrX 46685629 46685691 -130288449 - L3 LINE CR1 -3 1574 1513 207 296 0 3 chrX 46685787 46685914 -130288226 - L3 LINE CR1 -72 1505 1340 245 341 146 9 chrX 46686194 46686420 -130287720 - L2 LINE L2 -191 3081 2825 323 224 39 128 chrX 46686622 46686778 -130287362 - MER102b DNA MER1_type -18 323 182 670 50 20 10 chrX 46687291 46687390 -130286750 + (GGAA)n Simple_repeat Simple_repeat 3 102 0 231 296 28 46 chrX 46687431 46687539 -130286601 + MER5A DNA MER1_type 1 106 -83 189 320 20 50 chrX 46687629 46687729 -130286411 - MIR3 SINE MIR -34 174 78 287 348 111 21 chrX 46688625 46688904 -130285236 - L2 LINE L2 -411 2903 2600 4471 222 37 34 chrX 46688919 46689398 -130284742 - L1ME1 LINE L1 -137 6029 5553 523 116 105 0 chrX 46689398 46689460 -130284680 + L1PA11 LINE L1 6068 6145 -29 186 43 0 0 chrX 46689460 46689483 -130284657 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 523 116 105 0 chrX 46689483 46689515 -130284625 + L1PA11 LINE L1 6145 6172 -2 4471 222 37 34 chrX 46689515 46691233 -130282907 - L1ME1 LINE L1 -613 5553 3840 7719 19 0 19 chrX 46691233 46692806 -130281334 - L1PA3 LINE L1 0 6155 4596 2945 177 15 36 chrX 46692914 46693632 -130280508 - L1MDa LINE L1 -1182 5358 4656 * 9100 176 49 11 chrX 46693631 46696506 -130277634 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 46696590 46697800 -130276340 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 46697800 46698106 -130276034 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 46698106 46698700 -130275440 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 46698699 46698828 -130275312 - L1ME1 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 46698832 46699013 -130275127 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 46699024 46699124 -130275016 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 46699135 46700766 -130273374 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 46700767 46700971 -130273169 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 46701048 46701552 -130272588 + L1MB4 LINE L1 5654 6129 -51 415 311 112 28 chrX 46701627 46701971 -130272169 - L1MDa LINE L1 -1725 4815 4419 2232 131 14 14 chrX 46701971 46702337 -130271803 + MER47A DNA MER2_type 1 366 0 415 311 112 28 chrX 46702337 46702465 -130271675 - L1MDa LINE L1 -2121 4419 4303 231 333 0 0 chrX 46702470 46702533 -130271607 + L2 LINE L2 3134 3196 -76 35442 39 24 1 chrX 46702547 46708000 -130266140 - L1PA3 LINE L1 0 6155 573 7637 8 0 0 chrX 46707993 46708930 -130265210 - L1HS LINE L1 0 6155 5219 * 2690 27 0 0 chrX 46708930 46709264 -130264876 + L1HS LINE L1 4877 5210 -936 * 4365 58 17 0 chrX 46709257 46709841 -130264299 - L1PA3 LINE L1 -5551 595 2 240 296 0 0 chrX 46709842 46709913 -130264227 - L1MDa LINE L1 -2301 4239 4169 488 128 0 0 chrX 46709938 46710024 -130264116 - L1MB4 LINE L1 -1 6179 6094 4223 135 9 1 chrX 46710024 46710703 -130263437 - L1PA13 LINE L1 -1 6162 5476 15260 162 11 9 chrX 46710706 46714777 -130259363 - L1PA11 LINE L1 -2 6566 2484 385 236 9 9 chrX 46714771 46714877 -130259263 - L1MDa LINE L1 -2374 4166 4061 * 4684 155 32 15 chrX 46714892 46716773 -130257367 - L1MA3 LINE L1 0 6305 4262 * 9100 176 49 11 chrX 46716772 46719647 -130254493 + L1MA7 LINE L1 3291 6274 -17 3175 230 72 58 chrX 46719731 46720941 -130253199 - L1MDa LINE L1 -2669 3871 2625 2170 114 0 7 chrX 46720941 46721247 -130252893 - AluSx SINE Alu -7 305 2 3175 230 72 58 chrX 46721247 46721841 -130252299 - L1MDa LINE L1 -3915 2625 2041 406 264 0 0 chrX 46721840 46721969 -130252171 - L1MA3 LINE L1 -2798 3348 3220 * 535 216 22 17 chrX 46721973 46722154 -130251986 + L1MB4 LINE L1 2508 2689 -3457 427 190 40 0 chrX 46722165 46722265 -130251875 + L1MB4 LINE L1 3467 3570 -2576 4968 214 24 14 chrX 46722276 46723907 -130250233 + L1MB4 LINE L1 4023 5668 -512 1263 186 10 0 chrX 46723908 46724112 -130250028 + AluJb SINE Alu 2 207 -105 2474 135 6 62 chrX 46724189 46724693 -130249447 + L1MB4 LINE L1 5654 6129 -51 409 311 112 28 chrX 46724768 46725112 -130249028 - L1M4 LINE L1 -1725 4421 4025 2232 131 14 14 chrX 46725112 46725478 -130248662 + MER47A DNA MER2_type 1 366 0 409 311 112 28 chrX 46725478 46725606 -130248534 - L1M4 LINE L1 -2121 4025 3909 231 333 0 0 chrX 46725611 46725674 -130248466 + L2 LINE L2 3134 3196 -76 39607 45 22 2 chrX 46725688 46731717 -130242423 - L1PA3 LINE L1 0 6155 2 255 357 0 12 chrX 46731725 46731809 -130242331 + L2 LINE L2 3231 3313 0 204 291 12 35 chrX 46731958 46732044 -130242096 + L2 LINE L2 3185 3268 -4 570 291 117 22 chrX 46732274 46732504 -130241636 - MIR SINE MIR -1 261 10 314 186 29 0 chrX 46732505 46732575 -130241565 + MER112 DNA MER1_type 1 72 -188 248 227 30 0 chrX 46732584 46732650 -130241490 + (TA)n Simple_repeat Simple_repeat 1 68 0 381 247 169 0 chrX 46732650 46732804 -130241336 + MER112 DNA MER1_type 75 254 -6 1428 258 112 22 chrX 46732841 46733529 -130240611 + L2 LINE L2 2557 3310 -3 538 324 98 8 chrX 46734096 46734340 -130239800 + L3 LINE CR1 1213 1478 -99 837 289 99 52 chrX 46734343 46734706 -130239434 + L2 LINE L2 2927 3306 -7 214 286 20 0 chrX 46734715 46734764 -130239376 + L3 LINE CR1 1462 1511 -66 271 167 0 0 chrX 46734879 46734921 -130239219 + 5S rRNA rRNA 1 42 -79 718 284 67 0 chrX 46734921 46735252 -130238888 + L1M4 LINE L1 3719 4071 -2075 16418 60 7 6 chrX 46735470 46737984 -130236156 + L1P2 LINE L1 3150 5652 -502 16413 60 4 27 chrX 46738085 46741016 -130233124 + L1PA5 LINE L1 3237 6154 0 3594 110 0 8 chrX 46743621 46744156 -130229984 - L1PA13 LINE L1 -4 6159 5629 933 189 5 70 chrX 46744256 46744457 -130229683 + MER5A DNA MER1_type 2 189 0 1908 127 63 33 chrX 46745071 46745433 -130228707 - THE1C LTR MaLR 0 375 3 8784 125 4 91 chrX 46745435 46747162 -130226978 - THE1C-int LTR MaLR 0 1580 4 1506 180 55 33 chrX 46747165 46747532 -130226608 - THE1C LTR MaLR 0 375 1 673 286 0 15 chrX 46747534 46747730 -130226410 + MIR SINE MIR 70 262 0 224 231 17 154 chrX 46747863 46747980 -130226160 - MIR SINE MIR -72 136 36 1042 159 5 43 chrX 46748722 46748930 -130225210 + MSTB1 LTR MaLR 1 200 -232 6066 168 40 36 chrX 46748952 46750243 -130223897 + L1PA6 LINE L1 11 1306 -4840 * 27022 73 4 6 chrX 46750239 46754712 -130219428 + L1PA6 LINE L1 1724 6183 0 984 136 7 0 chrX 46754718 46754873 -130219267 + L1PA16 LINE L1 6002 6157 -9 730 220 64 32 chrX 46754882 46755100 -130219040 - L1ME3A LINE L1 -36 6134 5910 1170 208 38 8 chrX 46755106 46755342 -130218798 + MSTB1 LTR MaLR 188 430 -2 227 317 124 31 chrX 46755387 46755548 -130218592 - MIR3 SINE MIR -5 203 28 310 309 0 16 chrX 46755890 46756016 -130218124 - MIR SINE MIR -3 259 136 230 205 77 39 chrX 46756016 46756094 -130218046 - MIR SINE MIR -98 164 84 197 133 0 89 chrX 46756314 46756359 -130217781 - MIR SINE MIR -64 144 104 282 272 79 9 chrX 46756759 46756873 -130217267 + MIR3 SINE MIR 35 156 -52 947 213 202 0 chrX 46756901 46757188 -130216952 + Charlie4a DNA MER1_type 1 345 -163 737 208 26 0 chrX 46757188 46757342 -130216798 - L1MB7 LINE L1 -9 6175 6018 2024 229 57 17 chrX 46757351 46757892 -130216248 - MER90 LTR ERV1 -10 565 3 285 296 19 19 chrX 46758072 46758180 -130215960 - MER90-int LTR ERV1 -160 6641 6534 430 202 44 0 chrX 46758700 46758814 -130215326 - L1MA5A LINE L1 -220 6077 5959 * 1790 229 99 29 chrX 46758797 46759165 -130214975 - L1MEc LINE L1 -2623 3592 3251 3139 73 68 7 chrX 46759165 46759603 -130214537 + MER4C LTR ERV1 1 465 0 2087 188 100 25 chrX 46759603 46760081 -130214059 + LTR44 LTR ERV1 3 517 -2 1790 229 99 29 chrX 46760081 46760398 -130213742 - L1MEc LINE L1 -2963 3252 2858 645 216 9 0 chrX 46760401 46760512 -130213628 + MER21B LTR ERV1 3 114 -749 877 160 0 0 chrX 46760519 46760650 -130213490 + FLAM_C SINE Alu 6 136 -7 3791 179 30 6 chrX 46760650 46761294 -130212846 + MER21B LTR ERV1 106 764 -99 923 265 78 56 chrX 46761369 46761680 -130212460 - L1MEc LINE L1 -3351 2864 2561 2070 134 0 19 chrX 46761680 46761993 -130212147 + AluSx SINE Alu 1 307 -5 923 265 78 56 chrX 46761993 46762187 -130211953 - L1MEc LINE L1 -3654 2561 2373 189 0 0 0 chrX 46762187 46762208 -130211932 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 788 159 0 0 chrX 46762213 46762339 -130211801 - FLAM_C SINE Alu -7 126 1 923 265 78 56 chrX 46762339 46762687 -130211453 - L1MEc LINE L1 -3845 2370 1875 2408 77 13 0 chrX 46762687 46762986 -130211154 - AluSp SINE Alu -10 303 1 923 265 78 56 chrX 46762986 46763117 -130211023 - L1MEc LINE L1 -4340 1875 1748 3992 178 39 38 chrX 46763254 46764303 -130209837 - L1MB7 LINE L1 -28 6156 5107 243 225 0 0 chrX 46764421 46764492 -130209648 + CT-rich Low_complexity Low_complexity 2 72 0 280 266 31 0 chrX 46766965 46767029 -130207111 + G-rich Low_complexity Low_complexity 4 69 0 1878 123 23 43 chrX 46767816 46768117 -130206023 + MER1B DNA MER1_type 45 339 0 382 313 80 6 chrX 46770101 46770277 -130203863 + MIR SINE MIR 56 244 -18 202 255 0 0 chrX 46770387 46770438 -130203702 + MIR SINE MIR 93 143 -65 367 288 45 8 chrX 46770745 46770877 -130203263 - MIR SINE MIR -56 152 16 425 283 71 22 chrX 46771738 46771922 -130202218 + MIR SINE MIR 56 248 -14 294 265 69 3 chrX 46772801 46772922 -130201218 + MIR3 SINE MIR 22 158 -50 387 0 0 0 chrX 46773854 46773897 -130200243 + (CA)n Simple_repeat Simple_repeat 2 44 0 1979 141 0 3 chrX 46774253 46774543 -130199597 - AluJb SINE Alu -23 289 1 234 340 19 10 chrX 46774852 46774955 -130199185 + MIR3 SINE MIR 68 171 -37 5895 213 41 45 chrX 46777211 46779031 -130195109 - L1MB7 LINE L1 -1195 4951 3138 3949 228 69 19 chrX 46779070 46780445 -130193695 + L1M4 LINE L1 664 2107 -4539 5114 222 29 47 chrX 46780508 46781874 -130192266 + L1M4 LINE L1 21 1361 -5181 917 274 41 16 chrX 46781874 46782312 -130191828 + L1M4 LINE L1 2235 2683 -3963 924 236 17 8 chrX 46782312 46782578 -130191562 + L1M4 LINE L1 2590 2857 -3787 1874 128 67 14 chrX 46782637 46782934 -130191206 - AluSq SINE Alu 0 313 1 2009 245 57 33 chrX 46782957 46783804 -130190336 - L1MDb LINE L1 -5409 1000 9 518 256 74 4 chrX 46784004 46784168 -130189972 - MIR SINE MIR -92 170 2 182 330 71 9 chrX 46784237 46784349 -130189791 - L2 LINE L2 -235 3037 2919 508 42 0 0 chrX 46784528 46784599 -130189541 + L1PA3 LINE L1 6085 6155 0 290 353 60 5 chrX 46784646 46784847 -130189293 - L2 LINE L2 -706 2608 2397 324 306 70 15 chrX 46784847 46785046 -130189094 - L3b LINE CR1 -260 1323 1114 360 225 0 0 chrX 46785559 46785639 -130188501 + MER116 DNA Mariner 1 80 0 261 0 0 0 chrX 46785719 46785748 -130188392 + (CA)n Simple_repeat Simple_repeat 1 29 0 964 213 0 32 chrX 46785787 46785975 -130188165 + MER63A DNA MER1_type 29 210 0 182 294 59 0 chrX 46785975 46786043 -130188097 + L2 LINE L2 3189 3260 -12 205 223 84 54 chrX 46786188 46786302 -130187838 - MIR SINE MIR -76 132 33 27 29 0 0 chrX 46786764 46786798 -130187342 + AT_rich Low_complexity Low_complexity 1 34 0 835 90 0 0 chrX 46786798 46786909 -130187231 - L1MA1 LINE L1 -9 6293 6183 338 328 26 9 chrX 46788153 46788269 -130185871 - MIR SINE MIR -119 143 26 1621 178 42 3 chrX 46788430 46788716 -130185424 + AluJb SINE Alu 1 297 -15 290 378 5 55 chrX 46788743 46788930 -130185210 + L3 LINE CR1 1016 1192 -385 1866 162 47 44 chrX 46788930 46789134 -130185006 + MLT1A1 LTR MaLR 1 208 -157 2122 112 41 0 chrX 46789134 46789428 -130184712 + AluSx SINE Alu 1 306 -6 1866 162 47 44 chrX 46789428 46789587 -130184553 + MLT1A1 LTR MaLR 208 365 0 290 378 5 55 chrX 46789587 46789616 -130184524 + L3 LINE CR1 1192 1221 -356 795 265 242 21 chrX 46789674 46790109 -130184031 + L2 LINE L2 2777 3303 -10 198 273 39 0 chrX 46790126 46790203 -130183937 + L3 LINE CR1 1246 1325 -252 339 213 130 0 chrX 46790366 46790474 -130183666 - MIR3 SINE MIR -54 154 33 205 130 43 22 chrX 46790765 46790811 -130183329 + GA-rich Low_complexity Low_complexity 5 51 0 465 228 83 7 chrX 46791998 46792143 -130181997 + MIR SINE MIR 77 232 -30 263 256 51 0 chrX 46792256 46792334 -130181806 + MIR SINE MIR 81 162 -100 180 0 0 0 chrX 46795621 46795641 -130178499 + (TA)n Simple_repeat Simple_repeat 2 21 0 504 72 0 0 chrX 46798639 46798708 -130175432 + (TG)n Simple_repeat Simple_repeat 2 70 0 396 0 0 0 chrX 46798707 46798751 -130175389 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 218 139 0 47 chrX 46801265 46801308 -130172832 + (TCC)n Simple_repeat Simple_repeat 2 42 0 198 306 44 13 chrX 46802560 46802687 -130171453 + MIR SINE MIR 21 150 -58 634 294 60 0 chrX 46804397 46804615 -130169525 + MIR SINE MIR 29 259 -3 2414 94 0 0 chrX 46804700 46805009 -130169131 - AluY SINE Alu -2 309 1 188 369 24 0 chrX 46805106 46805190 -130168950 + L2 LINE L2 3186 3271 -1 227 308 42 58 chrX 46805256 46805376 -130168764 - L2 LINE L2 -18 3254 3137 183 279 143 54 chrX 46805365 46805468 -130168672 - L2 LINE L2 -841 2473 2352 * 2434 68 0 0 chrX 46805468 46805760 -130168380 + AluY SINE Alu 1 292 -19 183 279 143 54 chrX 46805760 46805803 -130168337 - L2 LINE L2 -962 2352 2314 * 621 263 16 77 chrX 46805800 46806112 -130168028 + L2 LINE L2 2921 3213 -100 * 1083 256 108 34 chrX 46806105 46806179 -130167961 - L2 LINE L2 -122 3191 3124 2059 157 0 0 chrX 46806179 46806485 -130167655 + 7SLRNA srpRNA srpRNA 2 307 -13 1083 256 108 34 chrX 46806485 46807066 -130167074 - L2 LINE L2 -189 3124 2460 522 325 107 40 chrX 46807084 46807813 -130166327 - L2 LINE L2 -1240 2074 1297 494 201 92 81 chrX 46807886 46808060 -130166080 + MIR SINE MIR 70 245 -17 1462 151 8 0 chrX 46808083 46808334 -130165806 - L1MA7 LINE L1 0 6291 6039 2283 139 41 36 chrX 46808334 46808874 -130165266 - MLT2A2 LTR ERVL -4 550 5 26040 95 6 4 chrX 46808875 46814455 -130159685 - HERVL-A2 LTR ERVL 0 5654 1 2028 161 35 52 chrX 46814461 46815010 -130159130 - MLT2A2 LTR ERVL -10 544 1 393 156 0 83 chrX 46815010 46815106 -130159034 - L1MA7 LINE L1 -244 6047 5960 291 200 0 33 chrX 46815301 46815361 -130158779 + L2 LINE L2 3252 3309 -4 360 243 99 20 chrX 46816075 46816247 -130157893 + MIR SINE MIR 20 203 -59 241 179 30 0 chrX 46816812 46816831 -130157309 + GA-rich Low_complexity Low_complexity 4 21 -51 2154 185 8 0 chrX 46816831 46817193 -130156947 - MLT1A1 LTR MaLR 0 365 1 241 179 30 0 chrX 46817193 46817240 -130156900 + GA-rich Low_complexity Low_complexity 21 72 0 663 248 200 0 chrX 46818579 46818835 -130155305 + LTR33A LTR ERVL 54 344 -179 346 288 153 25 chrX 46818831 46819263 -130154877 + LTR33A LTR ERVL 33 515 -8 * 186 238 79 32 chrX 46821505 46821568 -130152572 + L2 LINE L2 3187 3252 -61 472 305 40 11 chrX 46822512 46822689 -130151451 + MIR SINE MIR 20 201 -61 249 332 82 18 chrX 46822739 46823067 -130151073 + L2 LINE L2 1712 2060 -1254 313 336 89 48 chrX 46823283 46823699 -130150441 + L2 LINE L2 2422 2854 -460 837 185 50 0 chrX 46823922 46824129 -130150011 + MIR SINE MIR 43 261 -1 475 286 8 0 chrX 46824188 46824314 -130149826 - MIR3 SINE MIR -14 194 68 354 300 26 37 chrX 46824358 46824528 -130149612 - MIR SINE MIR -62 146 16 1618 210 107 7 chrX 46825001 46825440 -130148700 - Charlie4a DNA MER1_type -1 507 25 4921 30 0 0 chrX 46826442 46827013 -130147127 - L1PA4 LINE L1 0 6155 5585 274 308 29 0 chrX 46827321 46827425 -130146715 - L3 LINE CR1 -291 1286 1180 191 286 57 0 chrX 46827456 46827526 -130146614 - L3 LINE CR1 -73 1504 1431 2738 201 50 24 chrX 46827747 46828412 -130145728 - L1MD2 LINE L1 -1 6358 5677 3314 252 24 34 chrX 46828420 46828853 -130145287 - L1MD2 LINE L1 -1408 4738 4302 3433 91 23 0 chrX 46828853 46829324 -130144816 + L1PA8 LINE L1 5682 6163 -9 3314 252 24 34 chrX 46829324 46830364 -130143776 - L1MD2 LINE L1 -1844 4302 3327 357 125 0 0 chrX 46830369 46830425 -130143715 + (TA)n Simple_repeat Simple_repeat 1 56 0 4147 171 43 18 chrX 46830426 46830686 -130143454 - L1MB4 LINE L1 -17 6163 5911 369 0 0 0 chrX 46830686 46830727 -130143413 + (TG)n Simple_repeat Simple_repeat 2 42 0 4147 171 43 18 chrX 46830727 46831296 -130142844 - L1MB4 LINE L1 -269 5911 5313 1829 157 15 24 chrX 46831773 46832110 -130142030 - L1MB2 LINE L1 -8 7225 6892 1731 144 153 9 chrX 46832110 46832429 -130141711 - MSTA LTR MaLR -8 420 55 323 91 36 0 chrX 46832429 46832484 -130141656 - MLT2A1 LTR ERVL 0 444 388 277 129 29 0 chrX 46832484 46832554 -130141586 + (TA)n Simple_repeat Simple_repeat 1 72 0 2796 97 27 9 chrX 46832561 46832962 -130141178 - MLT2A1 LTR ERVL -40 475 1 456 69 0 0 chrX 46832962 46833020 -130141120 - MSTA LTR MaLR -370 58 1 3195 176 17 13 chrX 46833020 46833926 -130140214 - L1MB2 LINE L1 -341 6904 5991 4529 163 25 42 chrX 46833926 46834926 -130139214 - MER11C LTR ERVK 0 1071 1 802 213 11 6 chrX 46834927 46835101 -130139039 - L1MB2 LINE L1 -1213 5995 5821 705 191 0 0 chrX 46835127 46835253 -130138887 - L1MB2 LINE L1 -2001 5207 5082 518 217 53 0 chrX 46835252 46835404 -130138736 - L1MB4 LINE L1 -812 5334 5175 * 281 256 184 10 chrX 46835423 46835552 -130138588 - L1MB2 LINE L1 -6703 506 1 1302 249 37 26 chrX 46835564 46835993 -130138147 - L1MB4 LINE L1 -946 5200 4767 3369 179 146 27 chrX 46836003 46836233 -130137907 - L1MA5 LINE L1 -26 6274 6073 1855 201 49 15 chrX 46836233 46836640 -130137500 + MSTB LTR MaLR 2 422 -4 3369 179 146 27 chrX 46836640 46837264 -130136876 - L1MA5 LINE L1 -227 6073 5318 * 8297 182 19 4 chrX 46837256 46838902 -130135238 - L1MA5 LINE L1 -1189 4957 3287 347 43 0 0 chrX 46838905 46838952 -130135188 - L1PA15 LINE L1 -9 6156 6110 15210 235 39 32 chrX 46838957 46844955 -130129185 - L1PA13 LINE L1 -745 6052 2 2498 233 49 50 chrX 46844968 46845656 -130128484 - L1M4c LINE L1 -4516 1787 1099 2340 39 3 3 chrX 46845656 46845941 -130128199 - L1PA4 LINE L1 -4 6151 5867 2498 233 49 50 chrX 46845941 46845955 -130128185 - L1M4c LINE L1 -5204 1099 1086 2702 43 0 0 chrX 46845955 46846260 -130127880 - AluY SINE Alu -6 305 1 2498 233 49 50 chrX 46846260 46846506 -130127634 - L1M4c LINE L1 -5217 1086 777 2442 156 54 75 chrX 46847175 46847840 -130126300 - L1MDb LINE L1 -4754 1652 1002 * 41216 32 21 1 chrX 46847832 46853864 -130120276 - L1PA3 LINE L1 0 6155 1 1885 204 98 60 chrX 46853867 46854829 -130119311 - L1MDb LINE L1 -5311 1098 8 180 316 0 0 chrX 46854960 46855017 -130119123 + MIR SINE MIR 196 252 -10 265 329 0 0 chrX 46855026 46855099 -130119041 - MIR3 SINE MIR -38 170 98 2462 100 105 5 chrX 46855634 46856023 -130118117 + MSTA LTR MaLR 1 428 0 266 261 58 0 chrX 46856201 46856270 -130117870 + L1ME LINE L1 5746 5818 -303 828 240 77 21 chrX 46856615 46856848 -130117292 - MIR SINE MIR -5 257 12 294 73 0 0 chrX 46857925 46857966 -130116174 + (CA)n Simple_repeat Simple_repeat 2 42 0 396 0 0 0 chrX 46858972 46859016 -130115124 + (TTA)n Simple_repeat Simple_repeat 2 45 0 3550 36 9 0 chrX 46859016 46859462 -130114678 - L1PA4 LINE L1 -22 6133 5684 2795 13 0 0 chrX 46862738 46863044 -130111096 + AluY SINE Alu 1 306 -5 719 260 90 23 chrX 46864807 46865055 -130109085 - MIR SINE MIR -4 258 1 275 138 12 88 chrX 46866790 46866870 -130107270 - L1MD1 LINE L1 0 6359 6171 4522 235 61 36 chrX 46866871 46869959 -130104181 + L1MB3 LINE L1 1 3011 -2959 4006 152 19 7 chrX 46869959 46870685 -130103455 + L1MA7 LINE L1 5553 6287 -4 4522 235 61 36 chrX 46870685 46870900 -130103240 + L1MB3 LINE L1 3011 3035 -2935 1087 165 193 8 chrX 46870900 46871154 -130102986 + AluJo SINE Alu 1 301 -1 4522 235 61 36 chrX 46871154 46871521 -130102619 + L1MB3 LINE L1 3035 3391 -2579 13682 115 41 78 chrX 46871528 46873947 -130100193 - L1P3 LINE L1 -2854 3607 1227 2298 110 3 3 chrX 46873947 46874257 -130099883 - AluSg SINE Alu 0 310 1 13682 115 41 78 chrX 46874257 46874672 -130099468 - L1P3 LINE L1 -5234 1227 798 562 170 170 27 chrX 46874675 46874822 -130099318 + L1MB3 LINE L1 3407 3574 -2396 395 218 0 0 chrX 46874822 46874900 -130099240 + L1MB3 LINE L1 3851 3928 -2042 * 2370 213 2 6 chrX 46874898 46875438 -130098702 + L1MB3 LINE L1 4245 4782 -1188 * 12143 117 5 14 chrX 46875435 46877802 -130096338 + L1PA10 LINE L1 3391 5738 -393 1311 93 108 20 chrX 46877802 46878005 -130096135 + L1PA10 LINE L1 5947 6168 0 966 248 51 6 chrX 46878015 46878326 -130095814 + L1MB3 LINE L1 4766 5090 -880 39196 62 4 11 chrX 46878326 46884509 -130089631 + L1PA5 LINE L1 2 6147 -7 1634 159 40 37 chrX 46884521 46884924 -130089216 + L1MB3 LINE L1 5080 5483 -512 1409 173 5 0 chrX 46884927 46885147 -130088993 + AluJo SINE Alu 87 307 -5 1583 166 75 11 chrX 46885152 46885594 -130088546 + L1MB3 LINE L1 5483 5946 -49 250 145 97 0 chrX 46885686 46885748 -130088392 + L1MB3 LINE L1 5937 6004 -3 2443 164 71 54 chrX 46886004 46886620 -130087520 - L1MD1 LINE L1 -72 6564 5938 1626 176 88 65 chrX 46886620 46887144 -130086996 + LTR55 LTR ERV 1 536 -12 348 307 37 31 chrX 46889852 46890015 -130084125 + HERVL74 LTR ERVL 1893 2056 -3629 1881 183 34 6 chrX 46890088 46890443 -130083697 - MLT1A1 LTR MaLR 0 365 1 207 0 0 0 chrX 46890777 46890800 -130083340 + (CA)n Simple_repeat Simple_repeat 2 24 0 4515 156 30 13 chrX 46890884 46892027 -130082113 + L1MB4 LINE L1 5017 6179 -1 287 169 17 0 chrX 46892061 46892120 -130082020 + LTR55 LTR ERV 1 60 -488 40345 36 24 1 chrX 46892120 46898128 -130076012 - L1PA2 LINE L1 -3 6152 2 1333 209 51 68 chrX 46898130 46898600 -130075540 + LTR55 LTR ERV 38 499 -49 630 206 37 26 chrX 46898617 46898794 -130075346 - L1MD1 LINE L1 -811 5942 5783 954 130 0 0 chrX 46900397 46900551 -130073589 + (TA)n Simple_repeat Simple_repeat 1 154 0 1728 161 31 3 chrX 46901370 46901656 -130072484 + AluJb SINE Alu 1 294 -18 2427 251 102 7 chrX 46902569 46903581 -130070559 - L1MD1 LINE L1 -753 5787 4680 828 48 0 0 chrX 46903596 46903701 -130070439 + L1PA4 LINE L1 6051 6155 0 23 0 0 0 chrX 46903754 46903777 -130070363 + AT_rich Low_complexity Low_complexity 1 23 0 1445 88 0 69 chrX 46903788 46904005 -130070135 - AluY SINE Alu -109 202 1 2999 221 23 21 chrX 46904252 46905161 -130068979 - L1M4 LINE L1 -1116 5030 4120 9952 120 52 106 chrX 46905204 46906033 -130068107 - Tigger1 DNA MER2_type -4 2414 1542 8438 60 7 8 chrX 46906033 46907932 -130066208 - L1PA6 LINE L1 -2 6152 4261 9952 120 52 106 chrX 46907932 46909281 -130064859 - Tigger1 DNA MER2_type -876 1542 353 8266 220 48 31 chrX 46909281 46911078 -130063062 - L1PA13 LINE L1 -4958 1829 1 8118 202 89 68 chrX 46911088 46911938 -130062202 - L1MD1 LINE L1 -3890 2650 1819 1864 166 0 3 chrX 46911938 46912228 -130061912 + AluJb SINE Alu 1 289 -23 8118 202 89 68 chrX 46912228 46912402 -130061738 - L1MD1 LINE L1 -4721 1819 1650 1951 134 0 4 chrX 46912402 46912678 -130061462 + AluSx SINE Alu 1 275 -37 8118 202 89 68 chrX 46912678 46914337 -130059803 - L1MD1 LINE L1 -4890 1650 31 2009 104 97 0 chrX 46914366 46914645 -130059495 - AluSx SINE Alu -6 306 1 332 198 74 93 chrX 46914801 46914963 -130059177 + L1M4 LINE L1 1 159 -6383 7562 37 0 0 chrX 46914970 46915933 -130058207 - L1P LINE L1 -895 5251 4289 4136 257 47 31 chrX 46915942 46917415 -130056725 + L1M4 LINE L1 164 1659 -4883 1300 187 12 0 chrX 46917412 46917669 -130056471 - L1 LINE L1 -2083 4063 3804 * 1049 201 193 0 chrX 46917707 46917951 -130056189 - AluSx SINE Alu -11 301 11 1291 167 18 4 chrX 46917964 46918245 -130055895 - L1 LINE L1 -2390 3756 3472 397 326 21 20 chrX 46918272 46918518 -130055622 + L1MA6 LINE L1 467 961 -6207 10755 175 35 25 chrX 46918859 46919747 -130054393 + L1MA6 LINE L1 3281 4158 -3163 1667 208 10 7 chrX 46919747 46920055 -130054085 + AluJo SINE Alu 3 311 -1 10755 175 35 25 chrX 46920055 46920066 -130054074 + L1MA6 LINE L1 4158 4167 -3154 1879 159 3 7 chrX 46920066 46920375 -130053765 + AluJo SINE Alu 1 308 -4 657 84 9 19 chrX 46920375 46920482 -130053658 + LTR7 LTR ERV1 307 412 -38 10755 175 35 25 chrX 46920482 46921542 -130052598 + L1MA6 LINE L1 4167 5214 -2107 1902 206 53 17 chrX 46921542 46921959 -130052181 - Tigger2a DNA MER2_type 0 434 3 10755 175 35 25 chrX 46921959 46923637 -130050503 + L1MA6 LINE L1 5214 6951 -370 1333 204 40 6 chrX 46923687 46924011 -130050129 + L1M4 LINE L1 3949 4283 -1863 192 222 0 67 chrX 46924742 46924787 -130049353 + MIR3 SINE MIR 113 154 -54 * 329 276 179 32 chrX 46924784 46924940 -130049200 + MIR3 SINE MIR 19 197 -11 705 272 80 18 chrX 46925504 46925728 -130048412 - MIR SINE MIR -5 257 20 935 256 14 97 chrX 46926315 46926581 -130047559 - MER102b DNA MER1_type -1088 340 112 1365 97 0 15 chrX 46926581 46926787 -130047353 + L1PB1 LINE L1 5949 6151 0 935 256 14 97 chrX 46926787 46926891 -130047249 - MER102b DNA MER1_type -1316 112 1 336 289 29 10 chrX 46926956 46927060 -130047080 - MIR SINE MIR -50 212 107 636 155 86 0 chrX 46927667 46927783 -130046357 + MER3 DNA MER1_type 6 131 -78 183 114 0 0 chrX 46927783 46927818 -130046322 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 309 277 202 0 chrX 46927830 46927924 -130046216 + L2 LINE L2 3201 3313 0 1316 322 159 52 chrX 46928023 46930665 -130043475 + L2 LINE L2 307 3234 -38 2214 125 0 0 chrX 46930799 46931096 -130043044 - AluSq SINE Alu -16 297 1 189 308 29 67 chrX 46931164 46931268 -130042872 - L2 LINE L2 -7 3306 3207 252 383 102 33 chrX 46931331 46931605 -130042535 + L2 LINE L2 2942 3234 -38 21 0 0 0 chrX 46932157 46932178 -130041962 + AT_rich Low_complexity Low_complexity 1 21 0 1946 135 4 0 chrX 46932180 46932454 -130041686 + AluSx SINE Alu 1 275 -37 200 31 62 0 chrX 46932458 46932490 -130041650 + A-rich Low_complexity Low_complexity 1 34 0 256 268 268 8 chrX 46933613 46933736 -130040404 - L2 LINE L2 0 3313 3159 235 198 99 88 chrX 46933866 46933957 -130040183 - L2 LINE L2 0 3272 3181 1456 342 107 30 chrX 46934040 46935472 -130038668 - L2 LINE L2 -237 3035 1489 727 272 174 3 chrX 46936435 46936740 -130037400 + L1ME4a LINE L1 5382 5738 -2070 444 257 66 90 chrX 46936749 46936861 -130037279 + L1ME4a LINE L1 5791 5904 -217 2513 81 0 0 chrX 46936861 46937168 -130036972 + AluSq SINE Alu 1 307 -6 444 257 66 90 chrX 46937168 46937243 -130036897 + L1ME4a LINE L1 5904 5979 -142 1190 148 25 0 chrX 46937243 46937445 -130036695 - MER3 DNA MER1_type -2 207 1 444 257 66 90 chrX 46937445 46937591 -130036549 + L1ME4a LINE L1 5979 6117 -4 514 351 86 17 chrX 46937721 46938080 -130036060 - L2 LINE L2 -537 2777 2394 621 215 25 0 chrX 46939066 46939187 -130034953 - MIR3 SINE MIR -43 165 42 402 274 27 62 chrX 46939458 46939604 -130034536 - MIR3 SINE MIR -62 146 6 1623 179 13 45 chrX 46941275 46941583 -130032557 - AluJo SINE Alu -14 298 1 189 0 0 0 chrX 46942206 46942227 -130031913 + (TAA)n Simple_repeat Simple_repeat 2 22 0 714 279 73 5 chrX 46942569 46942773 -130031367 - MIR SINE MIR -10 252 35 394 222 111 0 chrX 46945485 46945584 -130028556 - MIR SINE MIR -142 120 11 195 114 0 0 chrX 46945754 46945789 -130028351 + (TA)n Simple_repeat Simple_repeat 2 36 0 1807 181 39 36 chrX 46947136 46947684 -130026456 - MLT2A2 LTR ERVL -7 547 3 2129 195 12 7 chrX 46947709 46948130 -130026010 + MER68 LTR ERV1 140 562 0 445 339 161 32 chrX 46948131 46948689 -130025451 + L2 LINE L2 2232 2861 -453 1675 160 20 5 chrX 46948701 46949329 -130024811 + L1MA3 LINE L1 4824 5569 -731 1558 182 79 4 chrX 46949330 46949610 -130024530 + AluJo SINE Alu 1 301 -11 2620 159 35 12 chrX 46949611 46950128 -130024012 + L1MA3 LINE L1 5777 6305 0 269 231 0 0 chrX 46950269 46950321 -130023819 + L2 LINE L2 3262 3313 0 523 273 154 14 chrX 46951575 46951795 -130022345 - MIR SINE MIR -10 252 2 236 376 17 17 chrX 46952478 46952595 -130021545 - MIR SINE MIR -118 144 28 1680 169 0 11 chrX 46953092 46953371 -130020769 - AluJo SINE Alu -15 297 22 630 267 27 0 chrX 46953799 46953949 -130020191 - MIR3 SINE MIR -11 197 44 830 267 42 38 chrX 46954082 46954322 -130019818 - MIR SINE MIR -21 241 1 330 153 0 0 chrX 46954485 46954544 -130019596 + (CA)n Simple_repeat Simple_repeat 2 60 0 279 316 0 0 chrX 46954597 46954676 -130019464 + MER5A DNA MER1_type 2 80 -109 * 315 271 0 0 chrX 46954673 46954743 -130019397 - MER5A DNA MER1_type -108 81 12 234 136 0 0 chrX 46955587 46955631 -130018509 + (A)n Simple_repeat Simple_repeat 1 44 0 250 261 69 0 chrX 46955662 46955792 -130018348 + L1ME LINE L1 2110 2248 -3898 1318 290 123 37 chrX 46955813 46958081 -130016059 + L1ME LINE L1 2290 4752 -1394 234 0 0 0 chrX 46958136 46958162 -130015978 + (A)n Simple_repeat Simple_repeat 1 26 0 364 333 65 28 chrX 46958162 46958463 -130015677 + L1ME LINE L1 4783 5099 -1047 316 303 58 28 chrX 46958470 46958875 -130015265 + L1ME LINE L1 5211 5629 -492 2031 169 34 5 chrX 46958902 46959280 -130014860 + MSTA LTR MaLR 1 389 -39 35995 87 5 7 chrX 46959287 46965437 -130008703 + L1PA6 LINE L1 11 6147 -7 306 128 0 0 chrX 46965437 46965484 -130008656 + MSTA LTR MaLR 375 421 -7 346 172 0 0 chrX 46966291 46966349 -130007791 + Tigger3(Golem) DNA MER2_type 2 59 -2970 826 114 100 14 chrX 46966350 46966490 -130007650 + Tigger3(Golem) DNA MER2_type 2887 3038 0 1586 177 21 18 chrX 46966535 46966818 -130007322 + AluJo SINE Alu 1 284 -28 392 298 139 24 chrX 46966872 46967243 -130006897 + L1MC/D LINE L1 5269 5668 -614 290 288 85 38 chrX 46967266 46967502 -130006638 + L1ME LINE L1 5563 5809 -312 34 55 0 0 chrX 46967605 46967660 -130006480 + AT_rich Low_complexity Low_complexity 1 55 0 2731 203 38 42 chrX 46967787 46968525 -130005615 - L1MD2 LINE L1 -1 6358 5624 701 270 54 31 chrX 46968691 46968896 -130005244 - MIR SINE MIR -34 228 16 2037 152 134 11 chrX 46968896 46969277 -130004863 + MSTA LTR MaLR 1 428 0 701 270 54 31 chrX 46969277 46969293 -130004847 - MIR SINE MIR -246 16 2 235 324 7 72 chrX 46969683 46969822 -130004318 - L2 LINE L2 -5 3308 3179 343 339 55 0 chrX 46970074 46970183 -130003957 - L2 LINE L2 -3 3269 3155 1118 229 148 22 chrX 46970306 46970712 -130003428 + MLT1D LTR MaLR 1 457 -48 180 0 0 0 chrX 46970712 46970732 -130003408 + (A)n Simple_repeat Simple_repeat 1 20 0 1673 161 38 14 chrX 46970742 46971034 -130003106 + AluJb SINE Alu 1 299 -13 362 254 8 0 chrX 46971034 46971152 -130002988 + L1M4 LINE L1 2275 2393 -3753 1730 179 8 27 chrX 46971157 46971473 -130002667 + MLT1A1 LTR MaLR 5 325 -40 2288 106 144 8 chrX 46971473 46971849 -130002291 + MSTA LTR MaLR 2 428 0 9133 139 19 41 chrX 46971851 46973465 -130000675 + MSTA-int LTR MaLR 3 1580 0 1905 168 134 8 chrX 46973465 46973845 -130000295 + MSTA LTR MaLR 1 428 0 1730 179 8 27 chrX 46973845 46973892 -130000248 + MLT1A1 LTR MaLR 324 365 0 1288 219 0 0 chrX 46973948 46974185 -129999955 - AluJo SINE Alu -75 237 1 3816 221 34 16 chrX 46974199 46975054 -129999086 + L1M4 LINE L1 2866 3749 -2397 1725 147 53 73 chrX 46975054 46975450 -129998690 - MLT1B LTR MaLR 0 390 3 3816 221 34 16 chrX 46975450 46975741 -129998399 + L1M4 LINE L1 3749 4033 -2113 547 213 155 7 chrX 46976027 46976182 -129997958 - MER5B DNA MER1_type 0 178 1 11426 39 1 3 chrX 46976262 46978437 -129995703 - L1PA4 LINE L1 -3 6152 3984 652 220 153 0 chrX 46978471 46978621 -129995519 - MER5B DNA MER1_type 0 178 6 210 238 150 12 chrX 46978702 46978782 -129995358 - MIR SINE MIR -1 261 171 33 107 0 0 chrX 46979021 46979152 -129994988 + AT_rich Low_complexity Low_complexity 1 131 0 1977 157 29 0 chrX 46979152 46979497 -129994643 - MSTA LTR MaLR -73 355 1 9374 168 16 6 chrX 46979497 46981131 -129993009 - MSTA-int LTR MaLR 0 1651 1 2743 134 21 0 chrX 46981131 46981550 -129992590 - MSTA LTR MaLR 0 428 1 1186 179 188 22 chrX 46981550 46981959 -129992181 + LTR54B LTR ERV1 20 496 -2 1738 177 0 32 chrX 46982427 46982737 -129991403 + AluJb SINE Alu 2 301 -11 269 325 12 0 chrX 46983340 46983423 -129990717 + GA-rich Low_complexity Low_complexity 5 88 0 252 210 34 17 chrX 46983440 46983559 -129990581 + GA-rich Low_complexity Low_complexity 4 124 0 429 189 85 9 chrX 46984405 46984511 -129989629 + MER103 DNA DNA 1 114 -52 668 221 160 30 chrX 46984642 46984873 -129989267 + MIR SINE MIR 2 262 0 568 239 9 0 chrX 46984868 46984981 -129989159 - MIR SINE MIR -64 144 31 * 182 214 0 0 chrX 46985399 46985441 -129988699 - MIR SINE MIR -3 259 218 289 302 132 0 chrX 46985478 46985584 -129988556 - MIR SINE MIR -142 120 1 496 216 9 52 chrX 46986143 46986259 -129987881 + MIR3 SINE MIR 58 168 -40 719 155 12 71 chrX 46986280 46986325 -129987815 - L1MB7 LINE L1 -9 6175 6129 1780 155 0 24 chrX 46986325 46986621 -129987519 - AluJb SINE Alu -21 291 3 719 155 12 71 chrX 46986621 46986743 -129987397 - L1MB7 LINE L1 -55 6129 6018 1208 208 13 9 chrX 46987326 46987557 -129986583 - MIR SINE MIR -17 245 14 1505 209 132 19 chrX 46987827 46988243 -129985897 + L1ME3A LINE L1 5569 6059 -111 197 33 33 0 chrX 46988243 46988273 -129985867 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1505 209 132 19 chrX 46988273 46988387 -129985753 + L1ME3A LINE L1 6059 6159 -11 643 248 29 34 chrX 46988818 46989024 -129985116 + MIR SINE MIR 58 262 0 586 228 9 112 chrX 46989538 46989625 -129984515 - MIR SINE MIR -50 212 118 2153 111 39 28 chrX 46989625 46989985 -129984155 - THE1B LTR MaLR 0 364 1 586 228 9 112 chrX 46989985 46990112 -129984028 - MIR SINE MIR -144 118 20 206 97 0 0 chrX 46991443 46991474 -129982666 + MIR SINE MIR 73 103 -159 641 271 24 18 chrX 46991704 46991874 -129982266 + MIR3 SINE MIR 21 191 -17 605 293 98 66 chrX 46992011 46992454 -129981686 + L2 LINE L2 1715 2191 -1123 2548 126 31 5 chrX 46992454 46992867 -129981273 + MSTA LTR MaLR 2 425 -3 605 293 98 66 chrX 46992867 46993140 -129981000 + L2 LINE L2 2191 2454 -860 493 269 142 35 chrX 46993150 46993347 -129980793 + MIR SINE MIR 4 221 -41 4633 258 69 33 chrX 46993372 46994139 -129980001 + L2 LINE L2 1326 2064 -1249 2906 0 0 0 chrX 46994139 46994450 -129979690 - AluYa5 SINE Alu 0 311 1 4633 258 69 33 chrX 46994450 46994744 -129979396 + L2 LINE L2 2064 2346 -967 1094 215 23 101 chrX 46994744 46995140 -129979000 - MLT1A1 LTR MaLR 0 365 1 4633 258 69 33 chrX 46995140 46995284 -129978856 + L2 LINE L2 2346 2483 -830 1602 175 19 35 chrX 46995284 46995599 -129978541 - AluJo SINE Alu -2 310 1 4633 258 69 33 chrX 46995599 46996037 -129978103 + L2 LINE L2 2483 3029 -284 26400 32 1 1 chrX 46996045 46999961 -129974179 + L1PA3 LINE L1 2257 6171 0 826 244 76 36 chrX 46999962 47000237 -129973903 + L2 LINE L2 3023 3308 -5 527 244 30 15 chrX 47000510 47000641 -129973499 + L2 LINE L2 3179 3311 -2 219 315 55 0 chrX 47000668 47000741 -129973399 - L2 LINE L2 -639 2675 2599 342 0 0 0 chrX 47001882 47001920 -129972220 + (TG)n Simple_repeat Simple_repeat 2 39 0 2722 173 2 2 chrX 47002012 47002440 -129971700 - MSTA LTR MaLR 0 428 1 9470 176 31 7 chrX 47002440 47004052 -129970088 - MSTA-int LTR MaLR 0 1651 1 2567 144 2 51 chrX 47004052 47004092 -129970048 - MSTA LTR MaLR 0 428 388 8694 64 0 1 chrX 47004092 47005949 -129968191 + L1PA6 LINE L1 4290 6153 -1 2567 144 2 51 chrX 47005949 47006358 -129967782 - MSTA LTR MaLR -40 388 1 805 166 14 7 chrX 47006437 47006576 -129967564 - L1PA13 LINE L1 -7 6156 6017 15758 177 94 52 chrX 47006576 47010145 -129963995 - L1PA14 LINE L1 -15 7584 4165 1884 144 183 19 chrX 47010145 47010512 -129963628 + MSTA LTR MaLR 1 427 -1 15758 177 94 52 chrX 47010512 47011762 -129962378 - L1PA14 LINE L1 -3434 4165 2968 264 30 0 0 chrX 47011762 47011795 -129962345 + (TG)n Simple_repeat Simple_repeat 2 34 0 15758 177 94 52 chrX 47011795 47014363 -129959777 - L1PA14 LINE L1 -4631 2968 508 633 32 21 11 chrX 47014363 47014456 -129959684 + (TTTTC)n Simple_repeat Simple_repeat 2 95 0 2196 82 20 3 chrX 47014460 47014752 -129959388 - AluSg1 SINE Alu -12 297 1 15758 177 94 52 chrX 47014752 47014890 -129959250 - L1PA14 LINE L1 -7093 506 1 5188 159 15 8 chrX 47014894 47016200 -129957940 - L1PA12 LINE L1 -132 6036 4718 335 168 69 0 chrX 47016239 47016317 -129957823 + MIR3 SINE MIR 100 186 -22 252 325 81 32 chrX 47016342 47016465 -129957675 + L2 LINE L2 2999 3127 -145 285 98 0 0 chrX 47017034 47017075 -129957065 + (CA)n Simple_repeat Simple_repeat 1 41 0 1455 203 25 0 chrX 47017131 47017453 -129956687 - MER33 DNA MER1_type 0 324 1 732 280 82 14 chrX 47017610 47017949 -129956191 - L2 LINE L2 -32 3281 2872 492 241 101 25 chrX 47018035 47018193 -129955947 - L3 LINE CR1 -526 1051 882 1439 215 54 17 chrX 47019094 47019447 -129954693 - LTR8A LTR ERV1 0 727 362 * 3829 144 30 65 chrX 47019445 47020069 -129954071 + MER50 LTR ERV1 29 627 -107 3917 12 0 0 chrX 47020069 47020487 -129953653 - L1PA2 LINE L1 0 6155 5738 3829 144 30 65 chrX 47020487 47020569 -129953571 + MER50 LTR ERV1 627 710 -24 210 291 0 0 chrX 47020719 47020774 -129953366 + MIR SINE MIR 99 153 -55 3680 143 53 5 chrX 47020853 47021435 -129952705 - MER4B LTR ERV1 0 610 1 1793 156 14 14 chrX 47021689 47021984 -129952156 + AluJo SINE Alu 5 299 -13 546 130 40 10 chrX 47021987 47022087 -129952053 + MER4A LTR ERV1 1 103 -561 419 39 19 0 chrX 47022084 47022136 -129952004 + MER4A LTR ERV1 261 313 -351 * 500 144 10 52 chrX 47022127 47022224 -129951916 + MER4A LTR ERV1 572 664 0 3053 98 212 25 chrX 47022226 47022873 -129951267 + MER4A-int LTR ERV1 1 834 -5764 621 130 43 17 chrX 47022938 47023053 -129951087 + MER4A-int LTR ERV1 1262 1379 -5219 311 248 238 0 chrX 47023050 47023151 -129950989 + MER4A-int LTR ERV1 2037 2161 -4170 * 195 42 0 0 chrX 47023212 47023236 -129950904 + (T)n Simple_repeat Simple_repeat 1 24 0 4404 121 15 18 chrX 47023237 47023889 -129950251 + MER4A-int LTR ERV1 198 847 -5911 1474 104 78 23 chrX 47023896 47024164 -129949976 + MER4A-int LTR ERV1 924 1825 -2460 4420 77 55 35 chrX 47024175 47024900 -129949240 + MER4A-int LTR ERV1 1756 2495 -4103 1383 148 74 0 chrX 47024900 47025129 -129949011 - LTR8 LTR ERV1 -434 257 12 3787 106 74 35 chrX 47025134 47025960 -129948180 + MER4A-int LTR ERV1 2731 3681 -2917 * 11302 110 78 15 chrX 47025959 47027847 -129946293 + MER4A-int LTR ERV1 3837 5842 -756 4338 128 63 12 chrX 47031355 47032090 -129942050 + MER4A-int LTR ERV1 5825 6596 -2 582 135 21 10 chrX 47032098 47032194 -129941946 + MER4A LTR ERV1 1 97 -567 * 1583 149 174 76 chrX 47032191 47032559 -129941581 + MER4A LTR ERV1 257 660 -4 239 163 0 0 chrX 47032612 47032655 -129941485 - L2 LINE L2 0 3313 3271 604 234 23 137 chrX 47032709 47032827 -129941313 - L2 LINE L2 0 3313 3183 3088 131 33 31 chrX 47032827 47033316 -129940824 - LTR2B LTR ERV1 0 490 1 604 234 23 137 chrX 47033316 47033504 -129940636 - L2 LINE L2 -130 3183 3042 2154 162 94 27 chrX 47033512 47033950 -129940190 - LTR8A LTR ERV1 -257 462 1 1053 202 24 113 chrX 47033950 47034286 -129939854 - L2 LINE L2 -853 2461 2156 3312 143 72 44 chrX 47034308 47034903 -129939237 + LTR9 LTR ERV1 1 612 0 694 269 66 15 chrX 47034916 47035113 -129939027 + MER63A DNA MER1_type 1 207 -3 234 0 0 0 chrX 47035207 47035233 -129938907 + (A)n Simple_repeat Simple_repeat 1 26 0 729 353 91 41 chrX 47035644 47036457 -129937683 + L2 LINE L2 2422 3272 0 683 186 0 25 chrX 47036479 47036597 -129937543 + AluJo SINE Alu 26 140 -172 1868 168 11 0 chrX 47036597 47036883 -129937257 + AluSx SINE Alu 1 289 -23 857 182 27 0 chrX 47036897 47037045 -129937095 + AluJo SINE Alu 122 273 -39 819 43 26 0 chrX 47037050 47037166 -129936974 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 288 111 0 0 chrX 47037169 47037214 -129936926 - L1 LINE L1 -3815 2331 2287 254 259 21 84 chrX 47037262 47037405 -129936735 - L1MC4 LINE L1 -1295 6747 6614 400 183 0 17 chrX 47037405 47037520 -129936620 + (TA)n Simple_repeat Simple_repeat 2 114 0 6422 140 61 17 chrX 47037608 47038910 -129935230 + L1PB1 LINE L1 1904 3268 -3594 1679 114 12 0 chrX 47038900 47039146 -129934994 + L1PB1 LINE L1 6242 6490 -377 * 2245 112 3 0 chrX 47039148 47039452 -129934688 + L1PB1 LINE L1 6562 6866 -1 2064 191 95 98 chrX 47039767 47039818 -129934322 - MLT1E2 LTR MaLR 0 626 576 1321 205 21 42 chrX 47039818 47040141 -129933999 - AluJo SINE Alu 0 317 1 2064 191 95 98 chrX 47040141 47040711 -129933429 - MLT1E2 LTR MaLR -50 576 5 377 356 53 39 chrX 47040736 47041017 -129933123 + L2 LINE L2 2469 2753 -561 2287 101 3 0 chrX 47041498 47041796 -129932344 + AluSp SINE Alu 1 299 -14 244 234 0 0 chrX 47041971 47042018 -129932122 - Charlie8 DNA MER1_type 0 2417 2371 473 222 118 7 chrX 47042037 47042181 -129931959 - MIR SINE MIR -62 200 41 670 320 134 12 chrX 47043367 47043711 -129930429 + L2 LINE L2 2790 3172 -141 1997 173 24 29 chrX 47043723 47044098 -129930042 - THE1C LTR MaLR 0 375 3 2174 114 9 18 chrX 47044100 47044432 -129929708 - THE1C-int LTR MaLR 0 1580 1252 3483 163 0 0 chrX 47244432 47244989 -129729151 - MSTA-int LTR MaLR -1094 557 1 2404 128 116 21 chrX 47244992 47245381 -129728759 - MSTA LTR MaLR -2 426 1 3340 208 58 15 chrX 47245383 47246298 -129727842 + L1M4 LINE L1 4513 5467 -707 2965 152 22 2 chrX 47246298 47246746 -129727394 - MSTB2 LTR MaLR 0 457 1 3340 208 58 15 chrX 47246746 47246793 -129727347 + L1M4 LINE L1 5467 5511 -663 185 366 97 21 chrX 47246915 47247008 -129727132 - L2 LINE L2 -9 3263 3164 264 267 73 12 chrX 47247155 47247320 -129726820 + L1ME3 LINE L1 5217 5391 -755 40 0 0 0 chrX 47247324 47247364 -129726776 + AT_rich Low_complexity Low_complexity 1 40 0 26 50 0 0 chrX 47247420 47247460 -129726680 + AT_rich Low_complexity Low_complexity 1 40 0 30400 107 15 23 chrX 47247479 47253817 -129720323 + L1PA7 LINE L1 91 6465 -4 2538 161 68 2 chrX 47254587 47255054 -129719086 - L1MB4 LINE L1 0 6180 5683 993 224 163 10 chrX 47255219 47255532 -129718608 + L1ME3 LINE L1 5584 5944 -218 289 106 21 0 chrX 47255689 47255736 -129718404 + L1ME3 LINE L1 5920 5967 -195 4672 154 21 10 chrX 47255736 47256533 -129717607 + L1MC1 LINE L1 5528 6333 0 293 85 0 0 chrX 47256535 47256582 -129717558 + L1M4b LINE L1 1514 1560 -5299 3081 250 69 49 chrX 47256582 47257557 -129716583 + L1M4 LINE L1 10 1003 -5539 3264 226 21 3 chrX 47257615 47258483 -129715657 + L1M4 LINE L1 3249 4131 -2513 3776 170 9 18 chrX 47258485 47259538 -129714602 - L1P5 LINE L1 -531 5620 4570 2191 144 0 0 chrX 47259538 47259850 -129714290 + AluSx SINE Alu 1 312 0 3359 138 27 13 chrX 47259876 47260528 -129713612 - MER83C-int LTR ERV1 -804 4076 2370 8012 168 43 4 chrX 47260528 47261899 -129712241 - MER83C-int LTR ERV1 -3399 1481 58 1274 199 4 0 chrX 47262011 47262237 -129711903 - MER83C LTR ERV1 0 373 147 847 191 0 86 chrX 47262482 47262607 -129711533 + L1MB7 LINE L1 5975 6076 -108 2155 136 7 0 chrX 47262607 47262917 -129711223 - AluSq SINE Alu -1 312 1 847 191 0 86 chrX 47262917 47263001 -129711139 + L1MB7 LINE L1 6076 6166 -18 265 183 17 104 chrX 47263013 47263128 -129711012 + L1M4b LINE L1 1543 1647 -5208 * 423 286 65 49 chrX 47263116 47263361 -129710779 + L1M4b LINE L1 2452 2700 -4438 354 258 149 55 chrX 47263414 47263491 -129710649 + L1M4b LINE L1 2567 2635 -4503 245 75 25 0 chrX 47263491 47263531 -129710609 + (TA)n Simple_repeat Simple_repeat 1 41 0 354 258 149 55 chrX 47263531 47263782 -129710358 + L1M4b LINE L1 2635 2926 -4212 1319 90 6 11 chrX 47264820 47264998 -129709142 + L1PB1 LINE L1 5973 6149 -2 666 185 104 38 chrX 47265107 47265318 -129708822 - L2 LINE L2 0 3313 3089 665 250 58 34 chrX 47265315 47265523 -129708617 + MIR SINE MIR 49 261 -1 * 2038 290 41 48 chrX 47265523 47266092 -129708048 - L2 LINE L2 -213 3100 2529 1903 147 0 0 chrX 47266092 47266371 -129707769 + AluSx SINE Alu 1 279 -33 207 0 0 0 chrX 47266377 47266400 -129707740 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2038 290 41 48 chrX 47266400 47266741 -129707399 - L2 LINE L2 -789 2524 2182 641 229 173 0 chrX 47267141 47267320 -129706820 + MIR SINE MIR 53 262 0 824 174 0 21 chrX 47267516 47267700 -129706440 - AluSg/x SINE Alu 0 319 139 388 75 0 0 chrX 47267700 47267753 -129706387 + MADE1 DNA Mariner 28 80 0 1526 166 126 7 chrX 47267753 47268031 -129706109 - MER21B LTR ERV1 -552 311 1 737 220 116 0 chrX 47268031 47268204 -129705936 - L1ME3A LINE L1 -340 5830 5638 1461 154 51 45 chrX 47268220 47268531 -129705609 - L1MD1 LINE L1 0 6242 5930 2012 181 108 26 chrX 47268571 47268607 -129705533 - MLT1D LTR MaLR -44 461 429 4053 136 34 7 chrX 47268607 47269225 -129704915 + MER41B LTR ERV1 1 635 0 2012 181 108 26 chrX 47269225 47269614 -129704526 - MLT1D LTR MaLR -76 429 1 180 0 0 0 chrX 47269652 47269672 -129704468 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 434 269 164 0 chrX 47269910 47270044 -129704096 - MER5B DNA MER1_type -22 156 1 1599 127 68 12 chrX 47270110 47270362 -129703778 + AluSx SINE Alu 14 279 -33 219 36 0 0 chrX 47270372 47270400 -129703740 + (GA)n Simple_repeat Simple_repeat 2 29 0 1394 34 11 0 chrX 47270400 47270575 -129703565 + (GGAA)n Simple_repeat Simple_repeat 4 180 0 277 95 24 0 chrX 47270670 47270712 -129703428 + MIR SINE MIR 112 154 -108 355 262 28 9 chrX 47271102 47271209 -129702931 + MIR SINE MIR 84 192 -70 23 0 0 0 chrX 47273673 47273696 -129700444 + AT_rich Low_complexity Low_complexity 1 23 0 279 315 45 0 chrX 47274364 47274453 -129699687 + MIR SINE MIR 93 185 -77 300 342 102 36 chrX 47275405 47275601 -129698539 + MIR SINE MIR 36 244 -18 278 248 9 35 chrX 47276315 47276428 -129697712 + CT-rich Low_complexity Low_complexity 1 110 0 2275 91 0 7 chrX 47276496 47276794 -129697346 + AluY SINE Alu 1 296 -15 235 289 92 3 chrX 47276956 47277067 -129697073 + MIR SINE MIR 47 143 -65 415 219 69 37 chrX 47277258 47277488 -129696652 + L2 LINE L2 3028 3242 -71 515 276 59 20 chrX 47278044 47278196 -129695944 - MIR3 SINE MIR -31 177 20 611 267 25 6 chrX 47278743 47278904 -129695236 + MIR SINE MIR 51 214 -48 1739 104 127 8 chrX 47279278 47279538 -129694602 + AluSg1 SINE Alu 1 291 -18 958 108 0 58 chrX 47280158 47280297 -129693843 - FLAM_C SINE Alu -2 131 1 1753 134 25 28 chrX 47280744 47281064 -129693076 - MER33 DNA MER1_type -2 322 4 191 36 36 0 chrX 47281859 47281887 -129692253 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2320 65 0 0 chrX 47284639 47284918 -129689222 + AluY SINE Alu 1 279 -32 205 51 51 0 chrX 47284919 47284958 -129689182 + A-rich Low_complexity Low_complexity 2 42 0 185 214 0 24 chrX 47285435 47285477 -129688663 - MIR SINE MIR -3 259 219 602 295 39 10 chrX 47285628 47285835 -129688305 - MIR SINE MIR -26 236 24 291 130 0 0 chrX 47286591 47286645 -129687495 + (CA)n Simple_repeat Simple_repeat 2 55 0 340 266 312 20 chrX 47286742 47286941 -129687199 - MIR SINE MIR 0 262 6 385 341 11 17 chrX 47287176 47287352 -129686788 + MIR3 SINE MIR 25 199 -9 222 118 0 0 chrX 47287797 47287831 -129686309 + (GA)n Simple_repeat Simple_repeat 1 34 0 530 167 33 120 chrX 47287930 47288080 -129686060 + MSTB2 LTR MaLR 1 137 -320 * 677 214 12 65 chrX 47288077 47288245 -129685895 + MSTB2 LTR MaLR 289 447 -10 2010 129 0 4 chrX 47288245 47288525 -129685615 + AluY SINE Alu 1 279 -32 250 44 22 22 chrX 47288527 47288572 -129685568 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2377 91 3 0 chrX 47288788 47289084 -129685056 + AluSq SINE Alu 1 297 -16 1592 132 48 15 chrX 47290513 47290786 -129683354 + AluJb SINE Alu 1 282 -30 342 0 0 0 chrX 47290789 47290827 -129683313 + (CA)n Simple_repeat Simple_repeat 2 39 0 1921 163 10 13 chrX 47291118 47291431 -129682709 - AluJo SINE Alu 0 312 1 495 246 11 2 chrX 47291509 47291626 -129682514 + MIR SINE MIR 32 147 -62 452 259 185 5 chrX 47291796 47292001 -129682139 - MIR SINE MIR 0 262 21 460 310 46 17 chrX 47292757 47292931 -129681209 - L3 LINE CR1 -211 1366 1188 196 312 45 17 chrX 47292931 47293110 -129681030 + MIR SINE MIR 1 250 -12 412 333 68 0 chrX 47293922 47294054 -129680086 - MIR3 SINE MIR -65 143 3 1949 150 34 0 chrX 47294385 47294678 -129679462 - AluJo SINE Alu -1 311 9 257 272 68 19 chrX 47294916 47295019 -129679121 - MIR SINE MIR -81 181 74 216 328 176 8 chrX 47295031 47295150 -129678990 + MIR SINE MIR 123 261 -1 180 342 148 7 chrX 47295932 47296081 -129678059 + MIR SINE MIR 50 219 -43 1979 135 0 16 chrX 47296656 47296959 -129677181 + AluSx SINE Alu 1 298 -14 289 304 42 115 chrX 47297112 47297146 -129676994 + MIR3 SINE MIR 3 38 -170 7904 168 69 26 chrX 47297146 47299152 -129674988 + L1PA13 LINE L1 3888 5936 -227 1459 151 0 0 chrX 47299152 47299377 -129674763 + AluSx SINE Alu 1 225 -87 7904 168 69 26 chrX 47299377 47299616 -129674524 + L1PA13 LINE L1 5936 6163 0 289 304 42 115 chrX 47299616 47299798 -129674342 + MIR3 SINE MIR 38 203 -5 541 306 140 0 chrX 47300159 47300345 -129673795 - MIR SINE MIR -48 214 3 248 221 205 56 chrX 47300413 47300662 -129673478 + L1ME4a LINE L1 5764 6049 -72 759 191 119 44 chrX 47301437 47301731 -129672409 - Charlie4a DNA MER1_type -7 501 186 2229 93 0 13 chrX 47301736 47301872 -129672268 + AluSq SINE Alu 1 137 -176 2080 110 3 7 chrX 47301872 47302180 -129671960 + AluSp SINE Alu 1 307 -6 2229 93 0 13 chrX 47302180 47302354 -129671786 + AluSq SINE Alu 137 307 -6 1181 101 0 0 chrX 47302354 47302512 -129671628 + AluSg/x SINE Alu 132 289 -21 476 167 14 176 chrX 47302601 47302811 -129671329 - Charlie4a DNA MER1_type -330 178 3 193 327 137 59 chrX 47302832 47303366 -129670774 - L2 LINE L2 0 3272 2695 2528 107 14 44 chrX 47303950 47304249 -129669891 + L1MA5A LINE L1 5535 5841 -456 2119 106 0 0 chrX 47304249 47304555 -129669585 + AluSx SINE Alu 1 306 0 2528 107 14 44 chrX 47304555 47304640 -129669500 + L1MA5A LINE L1 5841 5927 -370 2135 113 0 0 chrX 47304640 47304932 -129669208 + AluSx SINE Alu 2 293 -19 742 110 18 0 chrX 47304932 47305041 -129669099 + L1MA5A LINE L1 6172 6282 -15 2528 107 14 44 chrX 47305041 47305072 -129669068 + L1MA5A LINE L1 5925 6282 -15 678 176 15 30 chrX 47305081 47305212 -129668928 + FLAM_C SINE Alu 1 129 -4 36 23 0 0 chrX 47305217 47305260 -129668880 + AT_rich Low_complexity Low_complexity 1 43 0 265 221 3 0 chrX 47306357 47306411 -129667729 - MIR SINE MIR -62 146 100 519 333 0 43 chrX 47307997 47308161 -129665979 - MIR3 SINE MIR -7 201 46 2127 114 0 3 chrX 47308161 47308460 -129665680 + AluSx SINE Alu 1 298 -14 519 333 0 43 chrX 47308460 47308505 -129665635 - MIR3 SINE MIR -162 46 1 1650 147 16 45 chrX 47309360 47309674 -129664466 + AluJb SINE Alu 1 305 -7 304 234 75 32 chrX 47309835 47309929 -129664211 + MIR SINE MIR 103 200 -62 198 150 0 0 chrX 47309971 47310011 -129664129 + (TAAAAA)n Simple_repeat Simple_repeat 5 44 0 1961 125 0 0 chrX 47310538 47310848 -129663292 - AluSx SINE Alu 0 310 1 2171 92 0 23 chrX 47310919 47311224 -129662916 + AluSx SINE Alu 1 298 -14 272 236 86 64 chrX 47311573 47311713 -129662427 - MER5A DNA MER1_type -7 182 40 910 223 90 0 chrX 47312276 47312464 -129661676 - MER63A DNA MER1_type 0 210 6 236 250 0 0 chrX 47312491 47312547 -129661593 - MIR SINE MIR -109 153 98 186 212 0 0 chrX 47312545 47312578 -129661562 + MIR SINE MIR 67 99 -163 * 467 294 25 37 chrX 47312936 47313099 -129661041 + MIR SINE MIR 96 256 -6 253 274 133 44 chrX 47313278 47313391 -129660749 - MIR SINE MIR -65 143 21 2405 68 0 0 chrX 47313455 47313764 -129660376 - AluY SINE Alu -2 309 1 482 317 82 11 chrX 47314212 47314395 -129659745 + MIR3 SINE MIR 2 197 -11 243 0 0 0 chrX 47316979 47317006 -129657134 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 248 97 110 chrX 47317183 47317328 -129656812 - L2 LINE L2 -212 3060 2918 2093 98 6 25 chrX 47317698 47318013 -129656127 - AluSq SINE Alu -4 309 1 378 42 0 0 chrX 47318121 47318169 -129655971 + (CA)n Simple_repeat Simple_repeat 1 48 0 2069 95 7 3 chrX 47318604 47318899 -129655241 + AluSx SINE Alu 2 297 -15 514 234 25 117 chrX 47319028 47319144 -129654996 - MIR SINE MIR -12 250 158 2343 70 0 16 chrX 47319144 47319460 -129654680 - AluY SINE Alu 0 311 1 514 234 25 117 chrX 47319460 47319540 -129654600 - MIR SINE MIR -104 158 72 1720 36 5 0 chrX 47319764 47319986 -129654154 + L1P LINE L1 2994 3216 -2930 1925 95 0 0 chrX 47320296 47320559 -129653581 + AluSq SINE Alu 45 307 -6 2155 115 0 3 chrX 47321426 47321739 -129652401 + AluSq SINE Alu 1 312 -1 201 333 0 0 chrX 47321968 47322025 -129652115 - L2 LINE L2 -16 3256 3200 322 242 11 33 chrX 47323039 47323130 -129651010 + MER5B DNA MER1_type 10 98 -80 205 341 87 16 chrX 47324004 47324130 -129650010 - MIR3 SINE MIR -9 199 65 298 323 20 10 chrX 47324751 47324850 -129649290 + MIR SINE MIR 54 153 -109 819 139 0 23 chrX 47324855 47324984 -129649156 + AluJb SINE Alu 2 127 -185 2162 78 7 11 chrX 47325848 47326167 -129647973 - AluSg SINE Alu 0 318 1 466 314 30 12 chrX 47326414 47326583 -129647557 - MIR SINE MIR -19 243 72 207 0 0 0 chrX 47327275 47327298 -129646842 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 120 0 140 chrX 47327300 47327351 -129646789 - HY4 scRNA scRNA 0 93 61 1659 178 34 0 chrX 47327351 47327643 -129646497 + AluSx SINE Alu 6 307 -5 473 120 0 140 chrX 47327643 47327691 -129646449 - HY4 scRNA scRNA -32 61 8 1663 166 3 3 chrX 47328203 47328486 -129645654 + AluJo SINE Alu 11 293 -19 2265 92 3 0 chrX 47328494 47328797 -129645343 + AluSq SINE Alu 1 304 -9 2173 115 0 3 chrX 47328990 47329303 -129644837 + AluSx SINE Alu 1 312 0 468 51 0 0 chrX 47329788 47329847 -129644293 + (TGG)n Simple_repeat Simple_repeat 2 60 0 481 234 62 55 chrX 47330486 47330614 -129643526 - L2 LINE L2 -4 3309 3181 213 323 83 21 chrX 47330610 47330706 -129643434 + MIR3 SINE MIR 6 107 -101 * 336 318 7 40 chrX 47331464 47331612 -129642528 - MIR SINE MIR -25 237 95 1992 122 0 7 chrX 47332181 47332491 -129641649 + AluSx SINE Alu 1 308 0 294 269 39 9 chrX 47332699 47332816 -129641324 + L1ME LINE L1 5698 5818 -303 315 240 219 0 chrX 47334370 47334466 -129639674 - MIR SINE MIR -55 153 37 2173 113 0 0 chrX 47335450 47335750 -129638390 - AluSx SINE Alu -6 306 7 2214 108 0 10 chrX 47336104 47336418 -129637722 + AluSx SINE Alu 1 311 -1 2307 85 0 0 chrX 47337294 47337589 -129636551 + AluSx SINE Alu 1 295 -17 985 219 70 8 chrX 47338170 47338412 -129635728 - MIR SINE MIR -3 259 3 347 339 23 9 chrX 47338855 47338967 -129635173 + MIR SINE MIR 1 117 -91 346 338 166 0 chrX 47339343 47339488 -129634652 + MIR3 SINE MIR 32 200 -8 1271 71 24 0 chrX 47339602 47339772 -129634368 + AluSp SINE Alu 125 298 -15 207 200 261 0 chrX 47340301 47340366 -129633774 + L2 LINE L2 3232 3313 0 263 270 54 63 chrX 47340426 47340537 -129633603 - MIR3 SINE MIR -15 193 84 230 245 0 20 chrX 47341206 47341255 -129632885 + MIR3 SINE MIR 145 192 -16 442 346 13 13 chrX 47341978 47342134 -129632006 + MIR3 SINE MIR 45 200 -8 531 0 0 0 chrX 47342276 47342335 -129631805 + (TA)n Simple_repeat Simple_repeat 2 60 0 2399 77 0 0 chrX 47342479 47342789 -129631351 - AluSg SINE Alu 0 310 1 361 256 72 133 chrX 47343285 47343465 -129630675 + MIR3 SINE MIR 34 202 -6 200 337 10 0 chrX 47345576 47345677 -129628463 + C-rich Low_complexity Low_complexity 4 105 0 * 216 182 34 45 chrX 47345618 47345706 -129628434 + (CCCCG)n Simple_repeat Simple_repeat 1 87 0 * 242 188 0 71 chrX 47345660 47345745 -129628395 + (CCCGG)n Simple_repeat Simple_repeat 1 79 0 764 292 103 4 chrX 47345872 47346153 -129627987 - L3 LINE CR1 -90 1487 1179 772 158 0 38 chrX 47346472 47346605 -129627535 + FLAM_C SINE Alu 2 129 -14 2021 90 29 0 chrX 47346613 47346892 -129627248 + AluSx SINE Alu 1 287 -25 1576 143 33 50 chrX 47346920 47347220 -129626920 + AluSx SINE Alu 7 301 -11 631 255 16 65 chrX 47347357 47347541 -129626599 + MIR3 SINE MIR 20 194 -14 2105 130 0 0 chrX 47348182 47348483 -129625657 + AluSx SINE Alu 1 301 -11 302 281 56 11 chrX 47348624 47348713 -129625427 - MIR3 SINE MIR -39 169 77 191 274 0 20 chrX 47348718 47348769 -129625371 - L2 LINE L2 -667 2647 2598 4835 156 23 55 chrX 47348779 47349148 -129624992 - L1PA16 LINE L1 -3 6163 5784 2364 75 0 7 chrX 47349148 47349455 -129624685 - AluY SINE Alu -6 305 1 4835 156 23 55 chrX 47349455 47349959 -129624181 - L1PA16 LINE L1 -382 5784 5266 2243 98 0 0 chrX 47349959 47350256 -129623884 - AluSq SINE Alu -16 297 1 4835 156 23 55 chrX 47350256 47351205 -129622935 - L1PA16 LINE L1 -900 5266 4387 1738 161 21 0 chrX 47351209 47351494 -129622646 - AluSx SINE Alu -21 291 1 3952 193 4 38 chrX 47351529 47351978 -129622162 + L1 LINE L1 3564 4027 -2119 2113 123 0 0 chrX 47351978 47352280 -129621860 + AluSx SINE Alu 11 312 0 3952 193 4 38 chrX 47352280 47352367 -129621773 + L1 LINE L1 4027 4115 -2031 2311 80 3 0 chrX 47352367 47352666 -129621474 + AluSg SINE Alu 1 300 -10 3952 193 4 38 chrX 47352666 47352973 -129621167 + L1 LINE L1 4115 4379 -1767 2035 124 3 10 chrX 47353779 47354085 -129620055 + AluSx SINE Alu 2 305 -7 2248 103 3 0 chrX 47354088 47354399 -129619741 + AluSx SINE Alu 1 312 0 349 310 94 44 chrX 47355182 47355385 -129618755 - MIR SINE MIR -22 240 28 186 219 0 0 chrX 47355889 47355930 -129618210 - L2 LINE L2 -23 3249 3209 197 336 42 7 chrX 47356111 47356254 -129617886 + L2 LINE L2 2551 2698 -616 356 40 20 0 chrX 47356916 47356966 -129617174 + (CA)n Simple_repeat Simple_repeat 2 52 0 466 207 119 21 chrX 47357018 47357160 -129616980 + L1M3 LINE L1 5670 5823 -326 2004 126 0 0 chrX 47357165 47357479 -129616661 + AluSq SINE Alu 1 314 0 421 335 113 10 chrX 47357560 47357763 -129616377 + L3 LINE CR1 1284 1507 -70 264 273 68 16 chrX 47357855 47357979 -129616161 - MIR SINE MIR -36 172 34 569 274 22 7 chrX 47358099 47358234 -129615906 - L2 LINE L2 0 3272 3136 378 331 52 13 chrX 47358615 47358769 -129615371 + MIR SINE MIR 18 177 -85 2162 72 6 50 chrX 47358813 47359131 -129615009 + AluY SINE Alu 1 304 -7 2080 100 0 7 chrX 47359156 47359447 -129614693 + AluSq SINE Alu 1 289 -24 291 286 124 9 chrX 47360365 47360470 -129613670 - MIR3 SINE MIR -1 207 91 666 122 0 0 chrX 47361172 47361262 -129612878 - AluS SINE Alu -221 91 2 1972 100 0 35 chrX 47361334 47361624 -129612516 + AluSq SINE Alu 1 280 -33 369 0 0 0 chrX 47361629 47361670 -129612470 + (TAA)n Simple_repeat Simple_repeat 2 42 0 207 275 47 74 chrX 47361679 47361828 -129612312 + L2 LINE L2 3045 3189 -124 409 177 0 0 chrX 47361884 47361963 -129612177 - Alu SINE Alu 0 312 234 935 123 0 0 chrX 47361963 47362093 -129612047 - AluSq/x SINE Alu -183 130 1 1676 176 105 46 chrX 47362094 47362532 -129611608 + MLT1D LTR MaLR 42 505 0 501 333 0 8 chrX 47362532 47362664 -129611476 + L2 LINE L2 3142 3272 0 1798 138 0 82 chrX 47362844 47363184 -129610956 + AluSx SINE Alu 1 312 0 189 295 33 0 chrX 47363280 47363341 -129610799 - L2 LINE L2 0 3272 3210 450 127 0 0 chrX 47363555 47363626 -129610514 + (CA)n Simple_repeat Simple_repeat 2 72 0 1916 111 3 46 chrX 47363642 47363949 -129610191 - AluSg SINE Alu -16 294 1 261 57 0 0 chrX 47363949 47363984 -129610156 + (TA)n Simple_repeat Simple_repeat 1 35 0 487 0 32 0 chrX 47364300 47364363 -129609777 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1963 106 29 0 chrX 47364366 47364641 -129609499 - AluSg SINE Alu -27 283 1 2305 85 0 0 chrX 47364651 47364956 -129609184 - AluSx SINE Alu -2 310 6 243 204 0 0 chrX 47364956 47365000 -129609140 - AluJ/monomer SINE Alu -258 44 1 966 288 46 79 chrX 47365044 47365649 -129608491 + L2 LINE L2 2443 3030 -242 2221 97 0 3 chrX 47365721 47366019 -129608121 + AluSg SINE Alu 1 297 -13 297 382 30 65 chrX 47366209 47366253 -129607887 - L2 LINE L2 -481 2833 2789 2177 81 0 3 chrX 47366253 47366568 -129607572 - AluSp SINE Alu 0 314 1 297 382 30 65 chrX 47366568 47366784 -129607356 - L2 LINE L2 -525 2789 2581 734 184 44 25 chrX 47367124 47367282 -129606858 - MER46A DNA MER2_type -1 235 75 284 253 24 0 chrX 47367226 47367309 -129606831 + Tigger4(Zombi) DNA MER2_type 2646 2730 -1 * 242 259 153 0 chrX 47367411 47367496 -129606644 - L2 LINE L2 -928 2386 2289 187 333 0 0 chrX 47367635 47367695 -129606445 + L2 LINE L2 2976 3035 -237 306 277 136 63 chrX 47368307 47368642 -129605498 + L2 LINE L2 2730 3098 -174 730 283 0 11 chrX 47368759 47368939 -129605201 + MIR3 SINE MIR 22 199 -9 222 211 58 0 chrX 47369184 47369236 -129604904 - MIR SINE MIR -117 145 91 390 179 211 11 chrX 47369283 47369378 -129604762 + MER81 DNA DNA 1 114 0 705 228 5 85 chrX 47369559 47369748 -129604392 + MER5B DNA MER1_type 2 175 -3 287 282 25 98 chrX 47370457 47370620 -129603520 - L3 LINE CR1 -98 1479 1329 279 259 59 0 chrX 47370624 47370709 -129603431 - L3 LINE CR1 -376 1201 1112 342 0 0 0 chrX 47370843 47370881 -129603259 + (CA)n Simple_repeat Simple_repeat 2 39 0 591 289 118 58 chrX 47370887 47371070 -129603070 - L1MC4a LINE L1 -1896 5912 5741 2377 81 3 0 chrX 47371070 47371379 -129602761 - AluSp SINE Alu -3 310 1 591 289 118 58 chrX 47371379 47371628 -129602512 - L1MC4a LINE L1 -2067 5741 5454 459 0 0 0 chrX 47371630 47371681 -129602459 + (TA)n Simple_repeat Simple_repeat 2 52 0 2257 91 0 0 chrX 47371687 47371984 -129602156 - AluSx SINE Alu -15 297 1 1890 151 0 0 chrX 47372107 47372405 -129601735 - AluSx SINE Alu -14 298 1 2036 105 10 20 chrX 47372667 47372973 -129601167 - AluSq SINE Alu -10 303 1 250 313 122 9 chrX 47373085 47373200 -129600940 + MIR3 SINE MIR 45 172 -36 453 211 0 44 chrX 47373235 47373325 -129600815 + L2 LINE L2 3187 3272 0 202 290 29 103 chrX 47373717 47373787 -129600353 + MIR SINE MIR 40 97 -132 2266 99 0 3 chrX 47373787 47374091 -129600049 + AluSq SINE Alu 1 303 -10 202 290 29 103 chrX 47374091 47374158 -129599982 + MIR SINE MIR 97 167 -62 452 286 66 28 chrX 47374213 47374378 -129599762 - MIR SINE MIR -54 208 34 1952 138 10 3 chrX 47374378 47374683 -129599457 + AluSx SINE Alu 1 307 -5 452 286 66 28 chrX 47374683 47374699 -129599441 - MIR SINE MIR -228 34 20 506 346 108 27 chrX 47374712 47375007 -129599133 - L2 LINE L2 -28 3244 2926 742 263 102 33 chrX 47375135 47375409 -129598731 - L2 LINE L2 -5 3308 3016 866 127 0 8 chrX 47375409 47375543 -129598597 + FLAM_C SINE Alu 6 138 -5 491 229 57 57 chrX 47375545 47375737 -129598403 - L2 LINE L2 -296 3017 2826 2304 99 3 0 chrX 47375798 47376110 -129598030 - AluSp SINE Alu 0 313 1 2291 63 6 35 chrX 47376115 47376431 -129597709 - AluY SINE Alu -4 307 1 2185 100 0 31 chrX 47376456 47376776 -129597364 - AluSq SINE Alu -3 310 1 206 321 72 99 chrX 47376907 47377200 -129596940 - L2 LINE L2 -465 2849 2565 280 282 90 0 chrX 47377299 47377377 -129596763 + MIR3 SINE MIR 109 193 -15 302 299 43 55 chrX 47377964 47378218 -129595922 + L1M4c LINE L1 945 1195 -5189 2320 90 0 0 chrX 47378588 47378900 -129595240 - AluSx SINE Alu 0 312 1 238 325 61 57 chrX 47379226 47379423 -129594717 + MIR SINE MIR 2 187 -63 314 260 21 10 chrX 47379517 47379613 -129594527 - MIR SINE MIR -70 138 42 404 374 16 47 chrX 47380180 47380437 -129593703 + L2 LINE L2 2937 3185 -87 202 185 383 12 chrX 47380457 47380538 -129593602 - MIR SINE MIR 0 262 152 2555 194 10 62 chrX 47380551 47380773 -129593367 + L1MD1 LINE L1 5434 5666 -576 1885 177 87 11 chrX 47380773 47381140 -129593000 - MSTD LTR MaLR 0 396 2 2555 194 10 62 chrX 47381140 47381258 -129592882 + L1MD1 LINE L1 5666 5789 -453 1398 198 14 21 chrX 47381258 47381546 -129592594 + AluJo SINE Alu 5 290 -22 2555 194 10 62 chrX 47381546 47381837 -129592303 + L1MD1 LINE L1 5789 5977 -265 2125 113 7 0 chrX 47381837 47382138 -129592002 + AluSx SINE Alu 1 303 -9 2555 194 10 62 chrX 47382138 47382390 -129591750 + L1MD1 LINE L1 5977 6241 -1 1400 148 21 118 chrX 47382388 47382610 -129591530 + L1MB7 LINE L1 5821 6063 -121 * 1462 179 12 64 chrX 47382610 47382939 -129591201 - AluJo SINE Alu 0 312 1 1400 148 21 118 chrX 47382939 47383039 -129591101 + L1MB7 LINE L1 6063 6171 -13 1989 127 0 0 chrX 47383039 47383331 -129590809 - AluSx SINE Alu -17 295 4 1400 148 21 118 chrX 47383331 47383367 -129590773 + L1MB7 LINE L1 6171 6209 25 2749 87 0 0 chrX 47383367 47383722 -129590418 + THE1A LTR MaLR 1 355 0 11500 92 21 11 chrX 47383722 47384146 -129589994 + THE1A-int LTR MaLR 1 419 -1161 2097 108 0 17 chrX 47384146 47384443 -129589697 - AluSx SINE Alu -15 297 6 11500 92 21 11 chrX 47384443 47385583 -129588557 + THE1A-int LTR MaLR 419 1580 0 2539 93 29 0 chrX 47385583 47385928 -129588212 + THE1A LTR MaLR 1 355 0 512 299 91 67 chrX 47386034 47386439 -129587701 + L1MB2 LINE L1 9 423 -6119 1356 211 53 51 chrX 47386620 47386977 -129587163 + L1MB2 LINE L1 823 1183 -5359 2366 76 0 0 chrX 47386977 47387279 -129586861 + AluY SINE Alu 1 302 -9 1356 211 53 51 chrX 47387279 47387415 -129586725 + L1MB2 LINE L1 1183 1317 -5225 * 2916 224 54 28 chrX 47387403 47388308 -129585832 + L1MB2 LINE L1 2584 3510 -3134 500 171 19 0 chrX 47388312 47388417 -129585723 + CT-rich Low_complexity Low_complexity 4 110 0 948 122 14 0 chrX 47388417 47388564 -129585576 - AluSg/x SINE Alu 0 312 164 4878 224 21 131 chrX 47388566 47388853 -129585287 + L1MB2 LINE L1 3497 3814 -2830 1993 98 4 0 chrX 47388853 47389118 -129585022 + AluSp SINE Alu 1 266 -47 4878 224 21 131 chrX 47389118 47389402 -129584738 + L1MB2 LINE L1 3814 4128 -2516 2259 87 0 3 chrX 47389402 47389702 -129584438 - AluSq SINE Alu -14 299 1 4878 224 21 131 chrX 47389702 47390420 -129583720 + L1MB2 LINE L1 4128 4923 -1721 1965 138 20 0 chrX 47390420 47390724 -129583416 + AluSx SINE Alu 1 310 -2 4878 224 21 131 chrX 47390724 47390831 -129583309 + L1MB2 LINE L1 4923 5040 -1604 1958 139 0 16 chrX 47390831 47391147 -129582993 + AluSx SINE Alu 1 311 -1 4878 224 21 131 chrX 47391147 47392016 -129582124 + L1MB2 LINE L1 5040 5474 -1170 1895 116 35 0 chrX 47392016 47392301 -129581839 + AluY SINE Alu 1 295 -16 4878 224 21 131 chrX 47392301 47392510 -129581630 + L1MB2 LINE L1 5474 5704 -940 * 40462 37 26 1 chrX 47392495 47398527 -129575613 + L1PA2 LINE L1 1 6155 0 7172 94 15 0 chrX 47398561 47400346 -129573794 + L1PA7 LINE L1 4352 6152 -2 1786 149 42 0 chrX 47400388 47400677 -129573463 + AluSg SINE Alu 4 304 -6 4821 164 9 38 chrX 47400678 47400806 -129573334 + L1MB2 LINE L1 5679 5809 -860 1967 157 81 19 chrX 47400806 47401176 -129572964 - MSTD LTR MaLR -3 393 1 4821 164 9 38 chrX 47401176 47401772 -129572368 + L1MB2 LINE L1 5809 6372 -297 2127 114 16 0 chrX 47401772 47402078 -129572062 + AluSx SINE Alu 1 311 -1 4821 164 9 38 chrX 47402078 47402348 -129571792 + L1MB2 LINE L1 6372 6648 -21 328 135 58 0 chrX 47402349 47402401 -129571739 - AluJb SINE Alu -11 290 236 3781 169 16 4 chrX 47402444 47403150 -129570990 + L1MB4 LINE L1 5467 6180 0 233 230 380 10 chrX 47403223 47403323 -129570817 - L2 LINE L2 -19 3294 3158 2140 106 0 0 chrX 47403338 47403630 -129570510 - AluY SINE Alu -19 292 1 37 23 0 0 chrX 47404139 47404183 -129569957 + AT_rich Low_complexity Low_complexity 1 44 0 311 240 178 0 chrX 47404336 47404465 -129569675 - MIR SINE MIR -2 260 109 200 86 29 0 chrX 47404770 47404805 -129569335 + (CA)n Simple_repeat Simple_repeat 1 36 0 470 200 45 55 chrX 47405297 47405407 -129568733 - AluJb SINE Alu -81 231 123 538 294 156 0 chrX 47405963 47406181 -129567959 + MIR SINE MIR 5 256 -6 491 205 94 17 chrX 47406277 47406394 -129567746 + L2 LINE L2 3188 3313 0 293 235 82 12 chrX 47406409 47406494 -129567646 - L2 LINE L2 -33 3280 3190 1793 169 7 0 chrX 47406513 47406803 -129567337 + AluSx SINE Alu 3 294 -18 2290 88 3 0 chrX 47406805 47407113 -129567027 + AluSg1 SINE Alu 1 309 0 952 157 0 0 chrX 47407129 47407276 -129566864 + AluJb SINE Alu 141 287 -25 1464 311 41 10 chrX 47407429 47408039 -129566101 - L2 LINE L2 -330 2983 2347 1513 266 22 5 chrX 47408217 47408627 -129565513 - L2 LINE L2 -547 2767 2351 482 288 21 47 chrX 47408764 47409000 -129565140 + L2 LINE L2 2159 2388 -926 926 193 105 48 chrX 47409015 47409243 -129564897 + MIR SINE MIR 5 245 -17 222 211 0 0 chrX 47409260 47409298 -129564842 + (ATG)n Simple_repeat Simple_repeat 2 39 0 528 182 0 50 chrX 47409574 47409695 -129564445 - MER3 DNA MER1_type -5 204 90 715 229 16 83 chrX 47409701 47409893 -129564247 + MIR SINE MIR 34 212 -50 1992 132 0 10 chrX 47409914 47410217 -129563923 - AluSq SINE Alu -10 303 4 286 209 181 67 chrX 47410218 47410323 -129563817 + MIR3 SINE MIR 67 183 -25 554 280 73 69 chrX 47410409 47410670 -129563470 - MIR SINE MIR 0 262 1 287 314 38 19 chrX 47410800 47410905 -129563235 - L2 LINE L2 -653 2661 2555 220 319 133 26 chrX 47411091 47411204 -129562936 - L2 LINE L2 -793 2521 2397 396 250 83 15 chrX 47411920 47412052 -129562088 - MIR3 SINE MIR -3 205 65 233 357 112 0 chrX 47412127 47412225 -129561915 + MIR SINE MIR 31 139 -69 2084 105 0 3 chrX 47413593 47413879 -129560261 - AluSc SINE Alu -24 285 1 1798 136 3 30 chrX 47413925 47414227 -129559913 - AluSq SINE Alu -19 294 1 205 262 0 16 chrX 47414252 47414313 -129559827 + L2 LINE L2 3001 3060 -212 308 253 35 23 chrX 47414570 47414657 -129559483 + MIR SINE MIR 45 132 -76 307 275 20 7 chrX 47414774 47415076 -129559064 + CT-rich Low_complexity Low_complexity 1 306 0 449 297 34 0 chrX 47415417 47415535 -129558605 - MIR SINE MIR -64 144 23 1732 177 0 3 chrX 47415584 47415883 -129558257 + AluJo SINE Alu 1 298 -14 1211 189 45 51 chrX 47415883 47416196 -129557944 + AluJb SINE Alu 1 311 -1 197 333 104 10 chrX 47416279 47416375 -129557765 + L2 LINE L2 3150 3254 -18 188 332 62 15 chrX 47416457 47416587 -129557553 + MIR SINE MIR 33 167 -58 186 103 0 0 chrX 47416614 47416643 -129557497 + (A)n Simple_repeat Simple_repeat 1 29 0 251 360 79 0 chrX 47417053 47417142 -129556998 + MIR SINE MIR 45 140 -68 580 233 65 0 chrX 47417176 47417321 -129556819 + MIR3 SINE MIR 7 161 -47 505 302 22 28 chrX 47417346 47417525 -129556615 + MIR3 SINE MIR 30 207 -1 494 285 21 21 chrX 47418498 47418642 -129555498 + MIR3 SINE MIR 52 195 -13 405 277 0 18 chrX 47418956 47419068 -129555072 + MIR3 SINE MIR 60 169 -39 2227 100 0 0 chrX 47419390 47419691 -129554449 + AluSx SINE Alu 2 302 -10 2084 109 0 0 chrX 47420188 47420473 -129553667 - AluSx SINE Alu -27 285 1 2159 100 10 0 chrX 47420738 47421039 -129553101 + AluSg SINE Alu 1 304 -6 1547 116 42 4 chrX 47423136 47423377 -129550763 + AluSq SINE Alu 62 311 -2 180 0 0 0 chrX 47424014 47424034 -129550106 + (GGGTG)n Simple_repeat Simple_repeat 3 22 0 201 147 0 0 chrX 47424253 47424287 -129549853 + (CAG)n Simple_repeat Simple_repeat 1 34 0 209 33 33 0 chrX 47424385 47424415 -129549725 + (GA)n Simple_repeat Simple_repeat 1 31 0 1812 129 4 0 chrX 47426678 47426950 -129547190 + AluSx SINE Alu 21 293 -19 1599 102 0 9 chrX 47426953 47427178 -129546962 + AluSx SINE Alu 1 223 -89 228 103 0 0 chrX 47427180 47427219 -129546921 + AluSx SINE Alu 262 300 -2 5578 98 23 63 chrX 47427250 47427461 -129546679 + L1PA15 LINE L1 5121 5339 -826 213 65 0 0 chrX 47427461 47427492 -129546648 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2075 93 7 13 chrX 47427494 47427794 -129546346 - AluSq SINE Alu -15 298 1 5578 98 23 63 chrX 47427794 47428036 -129546104 + L1PA15 LINE L1 5340 5590 -575 1806 152 13 19 chrX 47428036 47428345 -129545795 + AluJo SINE Alu 1 307 -5 5578 98 23 63 chrX 47428345 47428556 -129545584 + L1PA15 LINE L1 5590 5808 -357 1836 146 3 0 chrX 47428556 47428869 -129545271 + AluJb SINE Alu 1 312 0 5578 98 23 63 chrX 47428869 47428919 -129545221 + L1PA15 LINE L1 5808 5858 -307 1775 157 0 0 chrX 47428919 47429206 -129544934 + AluSx SINE Alu 9 295 -17 5578 98 23 63 chrX 47429206 47429550 -129544590 + L1PA15 LINE L1 5858 6155 -10 1561 127 120 8 chrX 47429552 47429811 -129544329 + AluSg1 SINE Alu 1 288 -21 23 33 0 0 chrX 47429811 47429841 -129544299 + AT_rich Low_complexity Low_complexity 1 30 0 222 314 58 23 chrX 47430564 47430650 -129543490 + L2 LINE L2 3184 3272 0 398 327 13 19 chrX 47430866 47431022 -129543118 - MIR3 SINE MIR -3 205 51 252 100 0 0 chrX 47432742 47432782 -129541358 + (TC)n Simple_repeat Simple_repeat 2 41 0 732 135 54 0 chrX 47432784 47432895 -129541245 - FLAM_C SINE Alu -15 118 2 293 167 0 0 chrX 47432899 47432947 -129541193 - MIR SINE MIR -113 149 102 2082 134 0 0 chrX 47433672 47433978 -129540162 + AluSx SINE Alu 3 308 -4 247 246 15 15 chrX 47434560 47434625 -129539515 + CT-rich Low_complexity Low_complexity 1 65 0 249 179 0 119 chrX 47434910 47434994 -129539146 + GA-rich Low_complexity Low_complexity 3 76 0 210 37 0 0 chrX 47435201 47435228 -129538912 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1842 136 0 14 chrX 47435231 47435517 -129538623 - AluSx SINE Alu -30 282 1 2060 84 52 42 chrX 47436345 47436654 -129537486 + AluSx SINE Alu 1 312 0 243 255 120 53 chrX 47437047 47437195 -129536945 - MIR SINE MIR -65 143 30 2238 159 87 3 chrX 47437923 47438312 -129535828 + MSTB LTR MaLR 1 422 -4 401 200 20 20 chrX 47439525 47439625 -129534515 - L1MC5 LINE L1 -36 7925 7826 200 324 141 42 chrX 47439732 47439874 -129534266 - L2 LINE L2 -8 3264 3109 955 131 71 24 chrX 47439960 47440128 -129534012 - AluSg/x SINE Alu 0 310 135 898 192 66 0 chrX 47440128 47440295 -129533845 + MER58A DNA MER1_type 47 224 0 604 185 51 96 chrX 47440740 47440918 -129533222 - MIR3 SINE MIR -1 207 38 427 308 34 10 chrX 47440933 47441081 -129533059 - MIR3 SINE MIR -51 157 20 248 288 62 0 chrX 47441876 47441956 -129532184 - MIR3 SINE MIR -45 163 79 299 336 74 13 chrX 47443268 47443417 -129530723 + MIR SINE MIR 10 167 -95 15969 111 11 39 chrX 47443453 47445369 -129528771 + L1PA7 LINE L1 8 1840 -4621 3706 113 0 4 chrX 47445369 47445882 -129528258 + MER9 LTR ERVK 1 511 0 15969 111 11 39 chrX 47445882 47447577 -129526563 + L1PA7 LINE L1 1840 3580 -2881 12954 85 0 21 chrX 47447577 47449388 -129524752 + L1PA7 LINE L1 3878 5651 -818 1953 117 0 7 chrX 47449388 47449703 -129524437 - AluSg SINE Alu 0 314 2 12954 85 0 21 chrX 47449703 47450506 -129523634 + L1PA7 LINE L1 5651 6469 0 1999 112 3 7 chrX 47450533 47450847 -129523293 + AluSx SINE Alu 1 313 0 2128 89 4 0 chrX 47451130 47451449 -129522691 - AluSp SINE Alu 0 321 2 638 202 37 0 chrX 47451472 47451581 -129522559 - FLAM_C SINE Alu -25 118 6 182 365 7 68 chrX 47451602 47451750 -129522390 - L3b LINE CR1 -195 1388 1250 1978 120 0 0 chrX 47451918 47452250 -129521890 - AluSq SINE Alu 0 334 3 2081 109 3 7 chrX 47452267 47452561 -129521579 - AluSq SINE Alu -18 295 3 243 0 0 0 chrX 47452647 47452677 -129521463 + L1MA4A LINE L1 6100 6129 -174 1809 155 0 34 chrX 47452943 47453266 -129520874 - AluJo SINE Alu 0 312 1 432 0 0 0 chrX 47453374 47453422 -129520718 + (TA)n Simple_repeat Simple_repeat 2 49 0 2126 108 0 0 chrX 47453451 47453746 -129520394 + AluSx SINE Alu 1 295 -17 444 314 92 33 chrX 47453912 47454218 -129519922 + L1MC4a LINE L1 4987 5310 -836 1235 252 84 64 chrX 47454223 47454486 -129519654 + L1MC4a LINE L1 5318 5574 -2234 2023 120 0 10 chrX 47454486 47454785 -129519355 + AluSx SINE Alu 2 297 -15 1235 252 84 64 chrX 47454785 47455128 -129519012 + L1MC4a LINE L1 5574 5936 -1872 23 54 0 0 chrX 47455259 47455296 -129518844 + AT_rich Low_complexity Low_complexity 1 37 0 2033 107 14 0 chrX 47455519 47455810 -129518330 + AluSg SINE Alu 1 295 -15 5219 167 20 16 chrX 47455985 47456646 -129517494 + L1P LINE L1 2059 2727 -3419 2240 98 0 0 chrX 47456646 47456943 -129517197 + AluSq SINE Alu 1 297 -16 5219 167 20 16 chrX 47456943 47457303 -129516837 + L1P LINE L1 2727 3084 -3062 444 250 119 28 chrX 47457475 47457662 -129516478 - MIR3 SINE MIR 0 208 2 1968 103 11 0 chrX 47458176 47458449 -129515691 + AluSq SINE Alu 34 309 -4 2576 101 31 14 chrX 47458944 47459020 -129515120 + THE1B LTR MaLR 1 74 -290 4997 42 0 3 chrX 47459020 47459613 -129514527 - LTR10C LTR ERV1 0 591 1 2576 101 31 14 chrX 47459613 47459894 -129514246 + THE1B LTR MaLR 74 364 0 805 115 9 0 chrX 47460462 47460575 -129513565 + MLT1B LTR MaLR 8 121 -269 2122 79 4 14 chrX 47460581 47460861 -129513279 + AluSg SINE Alu 1 277 -33 2147 93 30 0 chrX 47463951 47464252 -129509888 - AluSg SINE Alu 0 310 1 1429 146 0 118 chrX 47464505 47464570 -129509570 + MLT1B LTR MaLR 113 184 -206 2352 77 0 3 chrX 47464570 47464882 -129509258 + AluY SINE Alu 1 311 0 2276 81 7 3 chrX 47464891 47465189 -129508951 + AluSc SINE Alu 1 299 -10 1429 146 0 118 chrX 47465189 47465428 -129508712 + MLT1B LTR MaLR 192 390 0 184 292 0 0 chrX 47465615 47465663 -129508477 + MIR SINE MIR 204 251 -11 1693 161 10 16 chrX 47466228 47466532 -129507608 + AluJo SINE Alu 1 302 -10 957 201 98 130 chrX 47466533 47466911 -129507229 + MLT1A1 LTR MaLR 30 364 -1 192 278 21 52 chrX 47466979 47467076 -129507064 - MIR SINE MIR -104 158 65 249 303 79 0 chrX 47467105 47467181 -129506959 + L2 LINE L2 3168 3249 -23 308 312 110 23 chrX 47468217 47468435 -129505705 - MIR SINE MIR -15 247 11 287 363 0 0 chrX 47468512 47468636 -129505504 + CT-rich Low_complexity Low_complexity 4 127 0 436 283 87 0 chrX 47468801 47468939 -129505201 + MIR SINE MIR 3 152 -110 1986 109 0 35 chrX 47468973 47469284 -129504856 + AluSq SINE Alu 1 300 -13 1171 117 0 0 chrX 47469284 47469446 -129504694 + AluSg/x SINE Alu 134 295 -17 685 171 9 0 chrX 47469610 47469721 -129504419 + FLAM_C SINE Alu 2 113 -30 1993 119 3 82 chrX 47469723 47469993 -129504147 + LTR8 LTR ERV1 1 241 -450 1873 118 7 4 chrX 47469993 47470341 -129503799 + AluSx SINE Alu 1 349 0 1993 119 3 82 chrX 47470341 47470412 -129503728 + LTR8 LTR ERV1 241 316 -375 2012 107 3 27 chrX 47470438 47470792 -129503348 - MER4A LTR ERV1 0 664 261 526 176 12 0 chrX 47470814 47470899 -129503241 + AluS SINE Alu 2 87 -226 517 191 0 0 chrX 47470918 47471002 -129503138 - LTR8 LTR ERV1 0 691 608 1109 169 26 5 chrX 47571004 47571199 -129402941 - MLT1D LTR MaLR -306 199 1 2552 66 0 0 chrX 47573100 47573404 -129400736 + AluY SINE Alu 1 304 -7 2338 99 3 6 chrX 47573700 47574012 -129400128 - AluSx SINE Alu -1 311 1 196 286 86 0 chrX 47574855 47574925 -129399215 - L2 LINE L2 -39 3233 3158 457 246 8 37 chrX 47574977 47575111 -129399029 + MER94 DNA DNA 2 131 -3 384 244 122 71 chrX 47575250 47575504 -129398636 - L2 LINE L2 -1 3312 3046 1834 140 3 11 chrX 47575715 47576001 -129398139 + AluJb SINE Alu 1 284 -28 1660 52 0 0 chrX 47576899 47577109 -129397031 - L1PA13 LINE L1 -1 6162 5953 2686 56 14 0 chrX 47577109 47577466 -129396674 + L1PA13 LINE L1 5591 5952 -216 23 0 0 0 chrX 47577887 47577910 -129396230 + AT_rich Low_complexity Low_complexity 1 23 0 201 135 58 0 chrX 47578933 47578985 -129395155 + CT-rich Low_complexity Low_complexity 2 56 0 399 310 99 64 chrX 47579840 47580153 -129393987 - L2 LINE L2 -33 3239 2916 252 255 57 142 chrX 47580248 47580389 -129393751 + L2 LINE L2 3136 3264 -8 2286 94 3 0 chrX 47580409 47580706 -129393434 - AluSq SINE Alu -15 298 1 4879 211 51 72 chrX 47581090 47581199 -129392941 + L1M4 LINE L1 922 1032 -6431 2682 76 50 0 chrX 47581199 47581556 -129392584 + MER51B LTR ERV1 3 377 0 4879 211 51 72 chrX 47581556 47581603 -129392537 + L1M4 LINE L1 1032 1078 -6385 2257 117 0 0 chrX 47581603 47581903 -129392237 + AluSq SINE Alu 1 300 -13 4879 211 51 72 chrX 47581903 47582933 -129391207 + L1M4 LINE L1 1078 2072 -5391 624 234 0 16 chrX 47582933 47583057 -129391083 + FLAM_A SINE Alu 1 122 -11 4879 211 51 72 chrX 47583057 47583412 -129390728 + L1M4 LINE L1 2072 2433 -5030 369 0 0 0 chrX 47583412 47583453 -129390687 + (CA)n Simple_repeat Simple_repeat 2 42 0 406 206 7 68 chrX 47583456 47583495 -129390645 - L1M4 LINE L1 -4866 1676 1636 1788 81 143 12 chrX 47583495 47583754 -129390386 - AluSx SINE Alu -9 293 1 406 206 7 68 chrX 47583754 47583860 -129390280 - L1M4 LINE L1 -4906 1636 1540 234 91 0 0 chrX 47583873 47583906 -129390234 + (TG)n Simple_repeat Simple_repeat 2 34 0 498 244 58 29 chrX 47583910 47584115 -129390025 + MER41E-int LTR ERV1 6391 6601 -75 1830 131 28 41 chrX 47584147 47584438 -129389702 + AluSx SINE Alu 11 297 -15 2601 100 11 5 chrX 47584467 47584847 -129389293 + MER41E LTR ERV1 17 398 -114 2227 237 53 69 chrX 47584857 47585319 -129388821 + L1M4 LINE L1 2361 2829 -4736 2490 93 34 6 chrX 47585319 47585672 -129388468 + THE1B LTR MaLR 2 364 0 2227 237 53 69 chrX 47585672 47586364 -129387776 + L1M4 LINE L1 2829 3531 -4034 2072 137 14 0 chrX 47586364 47586656 -129387484 + AluSx SINE Alu 1 296 -16 2227 237 53 69 chrX 47586656 47587478 -129386662 + L1M4 LINE L1 3531 4245 -3320 709 168 0 0 chrX 47587513 47587644 -129386496 + L1M4 LINE L1 5496 5626 -1939 2822 153 16 186 chrX 47587644 47587956 -129386184 + L1M4 LINE L1 5855 6218 -1347 2313 102 0 7 chrX 47587956 47588250 -129385890 + AluSq SINE Alu 2 293 -20 2822 153 16 186 chrX 47588250 47588839 -129385301 + L1M4 LINE L1 6218 6530 -1035 263 26 51 0 chrX 47588839 47588878 -129385262 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 2822 153 16 186 chrX 47588878 47589097 -129385043 + L1M4 LINE L1 6530 6785 -780 3083 227 40 20 chrX 47589097 47589520 -129384620 + L1PB3 LINE L1 1788 2201 -3945 2205 141 0 0 chrX 47589520 47589825 -129384315 + AluSx SINE Alu 1 305 -7 3083 227 40 20 chrX 47589825 47590511 -129383629 + L1PB3 LINE L1 2201 2918 -3228 2347 100 7 0 chrX 47591272 47591582 -129382558 - AluSx SINE Alu 0 312 1 5841 147 11 21 chrX 47592418 47592526 -129381614 + L1PB3 LINE L1 4549 4657 -1497 1881 63 44 56 chrX 47592526 47592796 -129381344 + AluY SINE Alu 42 308 -3 5841 147 11 21 chrX 47592796 47594305 -129379835 + L1PB3 LINE L1 4657 6145 -9 546 99 0 0 chrX 47594305 47594396 -129379744 + (TA)n Simple_repeat Simple_repeat 1 91 0 2549 186 18 75 chrX 47594399 47595457 -129378683 + L1MA9 LINE L1 5351 6312 0 3925 241 41 16 chrX 47595461 47596998 -129377142 + L1M4c LINE L1 2163 3736 -2646 261 302 0 12 chrX 47597042 47597128 -129377012 + L1M3c LINE L1 148 232 -5909 289 327 19 37 chrX 47597377 47597539 -129376601 + L1M3c LINE L1 477 635 -5496 801 233 164 9 chrX 47597567 47597799 -129376341 + MLT1C LTR MaLR 192 459 -8 751 199 0 0 chrX 47597847 47597993 -129376147 + L1M4c LINE L1 4711 4856 -1526 4774 104 0 0 chrX 47597997 47598621 -129375519 - L1PA16 LINE L1 -17 6149 5526 1846 120 40 4 chrX 47598739 47599042 -129375098 - AluSx SINE Alu 0 313 1 425 113 0 12 chrX 47599256 47599361 -129374779 - L1PB1 LINE L1 0 6151 6071 43250 54 5 8 chrX 47599398 47603188 -129370952 - L1PA4 LINE L1 -1 6154 2353 9960 31 0 176 chrX 47603188 47604811 -129369329 - SVA Other Other 0 1386 50 43250 54 5 8 chrX 47604811 47604822 -129369318 - L1PA4 LINE L1 -3802 2353 2343 612 0 0 0 chrX 47604822 47604890 -129369250 + (GGGAGA)n Simple_repeat Simple_repeat 6 73 0 43250 54 5 8 chrX 47604890 47607265 -129366875 - L1PA4 LINE L1 -3812 2343 3 2842 94 97 18 chrX 47607265 47607520 -129366620 - L1PB1 LINE L1 -70 6081 5847 1771 173 0 26 chrX 47607520 47607832 -129366308 - AluSx SINE Alu -8 304 1 2842 94 97 18 chrX 47607832 47607866 -129366274 - L1PB1 LINE L1 -304 5847 5817 405 0 0 0 chrX 47607866 47607911 -129366229 + (TA)n Simple_repeat Simple_repeat 2 46 0 2842 94 97 18 chrX 47607911 47608065 -129366075 - L1PB1 LINE L1 -334 5817 5602 4010 175 5 10 chrX 47608071 47608391 -129365749 - L1 LINE L1 -1310 4836 4516 342 0 0 0 chrX 47608391 47608429 -129365711 + (TG)n Simple_repeat Simple_repeat 2 39 0 2140 117 0 0 chrX 47608431 47608712 -129365428 - AluSx SINE Alu -31 281 1 4010 175 5 10 chrX 47608712 47609169 -129364971 - L1 LINE L1 -1631 4515 4060 397 274 0 40 chrX 47609505 47609629 -129364511 + L1M3c LINE L1 1814 1932 -5105 691 209 16 8 chrX 47609632 47609761 -129364379 + AluJb SINE Alu 2 131 -181 565 271 42 1 chrX 47609782 47610010 -129364130 + L1M3c LINE L1 1937 2191 -4846 1771 151 0 8 chrX 47610021 47610286 -129363854 + AluSx SINE Alu 1 263 -49 1053 167 0 4 chrX 47610320 47610576 -129363564 + (TA)n Simple_repeat Simple_repeat 1 256 0 234 179 45 0 chrX 47610577 47610644 -129363496 - L1MCa LINE L1 -4362 2064 1995 294 179 0 0 chrX 47610648 47610704 -129363436 + (TA)n Simple_repeat Simple_repeat 2 57 0 229 188 29 14 chrX 47610705 47610774 -129363366 - L1MCa LINE L1 -4362 2064 1995 1041 145 0 0 chrX 47610779 47610958 -129363182 + (TA)n Simple_repeat Simple_repeat 2 180 0 2135 122 3 0 chrX 47610958 47611246 -129362894 - AluSg SINE Alu -21 289 1 2573 139 3 10 chrX 47611258 47611633 -129362507 - L1PB3 LINE L1 -1 6153 5780 2004 146 0 7 chrX 47611633 47611934 -129362206 - AluSx SINE Alu -13 299 1 2573 139 3 10 chrX 47611934 47611946 -129362194 - L1PB3 LINE L1 -374 5780 5769 3253 154 45 44 chrX 47611946 47612192 -129361948 - L1PA8A LINE L1 -3 6128 5884 1043 63 0 53 chrX 47612192 47612382 -129361758 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3253 154 45 44 chrX 47612382 47612434 -129361706 - L1PA8A LINE L1 -247 5884 5834 2124 123 17 3 chrX 47612434 47612736 -129361404 - AluSx SINE Alu -6 306 1 3253 154 45 44 chrX 47612736 47613026 -129361114 - L1PA8A LINE L1 -297 5834 5546 2367 78 0 10 chrX 47613026 47613320 -129360820 - AluY SINE Alu -20 291 1 3253 154 45 44 chrX 47613320 47613932 -129360208 - L1PA8A LINE L1 -585 5546 4891 920 229 41 60 chrX 47613939 47614339 -129359801 + L1M4c LINE L1 1075 1787 -4516 * 7184 210 40 26 chrX 47614328 47616493 -129357647 + L1M2c LINE L1 16 2571 -4994 1213 78 0 0 chrX 47616492 47616646 -129357494 - THE1B-int LTR MaLR -1426 154 1 * 2155 150 72 20 chrX 47616646 47616992 -129357148 - THE1B LTR MaLR 0 364 1 1994 182 16 3 chrX 47616994 47617415 -129356725 + L1MA3 LINE L1 3288 3754 -3891 3576 94 43 39 chrX 47617421 47617930 -129356210 + MER9 LTR ERVK 1 511 0 21538 67 7 7 chrX 47617930 47618691 -129355449 + HERVK9 LTR ERVK 1 761 -5155 200 211 0 88 chrX 47618691 47618748 -129355392 + MER5B DNA MER1_type 55 106 -72 21538 67 7 7 chrX 47618748 47620717 -129353423 + HERVK9 LTR ERVK 761 2786 -3130 3367 36 0 0 chrX 47620717 47621102 -129353038 + HERVK9 LTR ERVK 3711 4095 -1821 302 56 0 0 chrX 47621119 47621155 -129352985 + HERVK9 LTR ERVK 3906 3941 -1975 5858 69 14 2 chrX 47621187 47622329 -129351811 + HERVK9 LTR ERVK 4745 5916 0 3498 117 49 4 chrX 47622329 47622818 -129351322 + MER9 LTR ERVK 1 511 0 4832 167 34 3 chrX 47622819 47623856 -129350284 + L1MA3 LINE L1 5834 6907 -743 2677 138 9 14 chrX 47623856 47624023 -129350117 + L1MA3 LINE L1 7301 7467 -257 2000 126 4 0 chrX 47624023 47624333 -129349807 + AluSx SINE Alu 5 315 0 2677 138 9 14 chrX 47624333 47624579 -129349561 + L1MA3 LINE L1 7467 7724 0 264 249 8 0 chrX 47624594 47624664 -129349476 + L1M2c LINE L1 2646 3101 -4465 2585 230 28 16 chrX 47624664 47624940 -129349200 + MLT2B3 LTR ERVL 3 274 -280 2089 148 132 23 chrX 47624940 47625326 -129348814 + MSTA LTR MaLR 1 428 0 2585 230 28 16 chrX 47625326 47625555 -129348585 + MLT2B3 LTR ERVL 274 517 -37 564 42 0 0 chrX 47625555 47625626 -129348514 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 2585 230 28 16 chrX 47625626 47625663 -129348477 + MLT2B3 LTR ERVL 517 552 -2 24931 195 24 12 chrX 47625666 47630247 -129343893 + ERVL-B3 LTR ERVL 4 4642 -1122 22887 196 15 17 chrX 47630249 47630489 -129343651 + L1P4 LINE L1 1 240 -7372 3903 34 0 0 chrX 47630489 47630926 -129343214 + L1PA5 LINE L1 5717 6153 -1 22887 196 15 17 chrX 47630926 47633642 -129340498 + L1P4 LINE L1 240 2962 -4650 1808 177 0 7 chrX 47633642 47633941 -129340199 + AluSx SINE Alu 1 297 -15 22887 196 15 17 chrX 47633941 47637129 -129337011 + L1P4 LINE L1 2962 6917 -695 1437 129 17 4 chrX 47637122 47637354 -129336786 + L1P LINE L1 3772 4006 -2140 * 7079 60 13 25 chrX 47637354 47638040 -129336100 + L1PA7 LINE L1 5089 5762 -392 2422 88 3 0 chrX 47638040 47638345 -129335795 + AluY SINE Alu 1 306 -5 7079 60 13 25 chrX 47638345 47638732 -129335408 + L1PA7 LINE L1 5762 6152 -2 553 224 48 24 chrX 47638740 47638905 -129335235 - Ricksha DNA DNA -1628 418 250 5162 160 21 19 chrX 47638908 47639304 -129334836 - ERVL LTR ERVL -818 4946 4552 2364 49 45 0 chrX 47639304 47639591 -129334549 - AluY SINE Alu -11 300 1 5162 160 21 19 chrX 47639591 47640052 -129334088 - ERVL LTR ERVL -1212 4552 4087 2904 141 2 2 chrX 47640053 47640486 -129333654 - ERVL LTR ERVL -2886 2878 2446 3486 235 79 28 chrX 47640486 47641612 -129332528 - L1M3c LINE L1 -4838 2199 1016 731 209 162 0 chrX 47641612 47641803 -129332337 - L1M3c LINE L1 -6701 329 108 5843 174 59 1 chrX 47641873 47642873 -129331267 - ERVL LTR ERVL -3304 2460 1403 22 0 0 0 chrX 47643151 47643173 -129330967 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chrX 47643847 47643896 -129330244 + AT_rich Low_complexity Low_complexity 1 49 0 228 286 167 0 chrX 47644055 47644139 -129330001 + MER5A DNA MER1_type 9 106 -83 274 350 14 21 chrX 47644201 47644341 -129329799 + MER5A DNA MER1_type 7 145 -44 744 195 38 65 chrX 47644360 47644469 -129329671 - MER5A DNA MER1_type -9 180 77 2408 46 10 30 chrX 47644469 47644771 -129329369 - AluY SINE Alu -15 296 1 744 195 38 65 chrX 47644771 47644846 -129329294 - MER5A DNA MER1_type -112 77 1 5364 135 53 9 chrX 47645533 47646398 -129327742 + MER4D LTR ERV1 1 903 0 238 118 0 0 chrX 47646403 47646437 -129327703 + L1MA2 LINE L1 6254 6287 -17 268 224 29 69 chrX 47646437 47646525 -129327615 - MIR SINE MIR -110 98 4 1165 221 36 54 chrX 47646802 47647191 -129326949 + L1MB5 LINE L1 3410 3791 -2355 * 3897 186 68 39 chrX 47647182 47648410 -129325730 + L1MB5 LINE L1 4334 5524 -650 245 29 29 0 chrX 47648410 47648444 -129325696 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3897 186 68 39 chrX 47648444 47648503 -129325637 + L1MB5 LINE L1 5524 5580 -594 1795 169 0 36 chrX 47648503 47648804 -129325336 + AluJb SINE Alu 1 290 -22 3897 186 68 39 chrX 47648804 47649286 -129324854 + L1MB5 LINE L1 5580 6166 -8 21 71 0 0 chrX 47649289 47649331 -129324809 + AT_rich Low_complexity Low_complexity 1 42 0 266 0 29 0 chrX 47649333 47649367 -129324773 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 6546 160 41 13 chrX 47649367 47649510 -129324630 - L1MA2 LINE L1 -4 7719 7582 306 0 0 0 chrX 47649510 47649544 -129324596 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2159 107 0 0 chrX 47649544 47649825 -129324315 - AluSg SINE Alu -29 281 1 6546 160 41 13 chrX 47649825 47651672 -129322468 - L1MA2 LINE L1 -141 7582 5657 378 0 0 0 chrX 47651672 47651714 -129322426 + (TG)n Simple_repeat Simple_repeat 1 42 0 6546 160 41 13 chrX 47651714 47651984 -129322156 - L1MA2 LINE L1 -2066 5657 5396 218 204 0 74 chrX 47654099 47654207 -129319933 + CT-rich Low_complexity Low_complexity 2 101 0 313 248 164 65 chrX 47654474 47654736 -129319404 + L1M2 LINE L1 679 966 -5883 17911 188 51 13 chrX 47654743 47655625 -129318515 - L1MA2 LINE L1 -2136 5429 4582 2093 136 0 0 chrX 47655625 47655933 -129318207 - AluSx SINE Alu -4 308 1 17911 188 51 13 chrX 47655933 47660265 -129313875 - L1MA2 LINE L1 -2983 4582 22 222 333 15 0 chrX 47660877 47660943 -129313197 + L3 LINE CR1 1508 1574 -3 6803 169 22 14 chrX 47661104 47662484 -129311656 - L1MA2 LINE L1 -158 7565 6154 1673 157 135 70 chrX 47662484 47662885 -129311255 - MSTA LTR MaLR -1 427 1 6803 169 22 14 chrX 47662885 47663720 -129310420 - L1MA2 LINE L1 -1569 6154 5328 * 23949 110 11 9 chrX 47663708 47667623 -129306517 + L1PA8 LINE L1 1783 5706 -448 2763 71 87 5 chrX 47667624 47667991 -129306149 + L1PA8 LINE L1 5776 6172 0 9208 77 7 102 chrX 47668002 47669506 -129304634 - SVA Other Other -1 1385 25 234 0 0 0 chrX 47669523 47669549 -129304591 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 324 104 0 0 chrX 47669549 47669597 -129304543 - L1MA2 LINE L1 -2207 5358 5311 1557 251 41 25 chrX 47670341 47670851 -129303289 - L1MA2 LINE L1 -3304 4261 3744 5273 58 5 5 chrX 47670855 47671489 -129302651 - L1PA5 LINE L1 -4 6150 5517 38352 68 5 0 chrX 47671489 47676410 -129297730 + L1P LINE L1 1 4941 -1205 765 152 15 112 chrX 47676414 47676666 -129297474 - L1MA2 LINE L1 -3816 3749 3523 6662 44 25 1 chrX 47676745 47682674 -129291466 - L1PA3 LINE L1 0 6155 1 3620 154 46 19 chrX 47682674 47683157 -129290983 - L1MA2 LINE L1 -4026 3539 3028 2153 112 3 3 chrX 47683157 47683453 -129290687 - AluY SINE Alu -15 296 1 3620 154 46 19 chrX 47683453 47683715 -129290425 - L1MA2 LINE L1 -4537 3028 2774 1142 194 61 130 chrX 47683715 47684092 -129290048 + MLT1D LTR MaLR 149 499 -6 268 315 0 0 chrX 47684171 47684244 -129289896 - L3 LINE CR1 -70 1507 1435 481 273 192 7 chrX 47684503 47684654 -129289486 - MIR SINE MIR -53 209 32 419 261 159 15 chrX 47684669 47684864 -129289276 - MIR SINE MIR -6 256 34 1868 169 0 0 chrX 47684924 47685214 -129288926 + AluJb SINE Alu 1 290 -22 198 0 0 0 chrX 47685214 47685236 -129288904 + (TA)n Simple_repeat Simple_repeat 2 23 0 312 83 0 0 chrX 47685625 47685673 -129288467 + (GTTTG)n Simple_repeat Simple_repeat 2 49 0 1918 153 0 7 chrX 47686319 47686619 -129287521 + AluJb SINE Alu 1 298 -14 1932 101 91 4 chrX 47686624 47686900 -129287240 + AluSx SINE Alu 1 300 -12 433 248 0 0 chrX 47687616 47687745 -129286395 + L1ME4a LINE L1 5982 6110 -11 1299 155 42 0 chrX 47687760 47687953 -129286187 - AluJo SINE Alu -26 286 86 2164 109 0 0 chrX 47688000 47688330 -129285810 + AluSg SINE Alu 1 330 0 881 148 0 15 chrX 47689371 47689506 -129284634 - FLAM_C SINE Alu 0 133 1 331 261 164 17 chrX 47689546 47689784 -129284356 - L1ME4a LINE L1 -73 6048 5776 2252 121 23 0 chrX 47690173 47690478 -129283662 + AluSx SINE Alu 1 312 0 237 65 0 0 chrX 47690489 47690520 -129283620 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 785 199 55 116 chrX 47691197 47691408 -129282732 - ORSL DNA AcHobo 0 275 85 1959 162 0 3 chrX 47691408 47691704 -129282436 - AluJb SINE Alu -17 295 1 785 199 55 116 chrX 47691704 47691784 -129282356 - ORSL DNA AcHobo -190 85 2 392 352 16 8 chrX 47692254 47692382 -129281758 - MIR3 SINE MIR -38 170 42 313 357 116 49 chrX 47692788 47693158 -129280982 - L2 LINE L2 -9 3263 2869 217 391 11 0 chrX 47693235 47693322 -129280818 - L2 LINE L2 -644 2670 2583 2184 112 0 3 chrX 47693918 47694228 -129279912 - AluSx SINE Alu 0 309 1 23 0 0 0 chrX 47694243 47694266 -129279874 + AT_rich Low_complexity Low_complexity 1 23 0 713 249 20 30 chrX 47694448 47694649 -129279491 - MIR SINE MIR -56 206 8 2022 133 3 32 chrX 47694739 47695054 -129279086 - AluJb SINE Alu -6 306 1 589 275 28 47 chrX 47696800 47697011 -129277129 - MIR SINE MIR -52 210 4 2353 116 0 0 chrX 47697106 47697416 -129276724 - AluSx SINE Alu -2 310 1 201 220 0 34 chrX 47700173 47700232 -129273908 + T-rich Low_complexity Low_complexity 3 59 0 222 37 0 0 chrX 47700443 47700470 -129273670 + (TC)n Simple_repeat Simple_repeat 2 28 0 2303 110 7 0 chrX 47701425 47701734 -129272406 + AluSx SINE Alu 1 311 -1 467 241 22 30 chrX 47702153 47702308 -129271832 - MIR3 SINE MIR -41 167 15 1850 174 7 0 chrX 47703312 47703616 -129270524 + AluJo SINE Alu 1 306 -6 274 272 204 20 chrX 47704000 47704147 -129269993 - MIR SINE MIR -51 211 38 748 224 39 6 chrX 47704165 47704321 -129269819 - MER5A DNA MER1_type 0 189 29 216 286 0 92 chrX 47704342 47704440 -129269700 + MIR3 SINE MIR 71 159 -49 21 36 0 0 chrX 47704457 47704485 -129269655 + AT_rich Low_complexity Low_complexity 1 28 0 2388 81 19 7 chrX 47704505 47704813 -129269327 + AluSx SINE Alu 1 312 0 234 208 0 0 chrX 47704974 47705022 -129269118 + MIR3 SINE MIR 151 198 -10 180 152 0 0 chrX 47706342 47706375 -129267765 + (CTG)n Simple_repeat Simple_repeat 3 35 0 527 203 0 91 chrX 47707025 47707168 -129266972 - MIR3 SINE MIR -25 183 54 361 271 10 21 chrX 47707849 47707945 -129266195 + MIR3 SINE MIR 71 165 -43 297 0 0 0 chrX 47708034 47708067 -129266073 + (CA)n Simple_repeat Simple_repeat 1 33 0 387 0 0 0 chrX 47710136 47710179 -129263961 + (CA)n Simple_repeat Simple_repeat 2 44 0 2689 48 0 13 chrX 47710735 47711050 -129263090 - AluY SINE Alu 0 311 1 180 243 0 0 chrX 47711602 47711676 -129262464 + CT-rich Low_complexity Low_complexity 2 75 0 687 257 0 7 chrX 47712146 47712298 -129261842 + MIR SINE MIR 110 260 -2 270 320 46 7 chrX 47712842 47712995 -129261145 - L2 LINE L2 -605 2709 2551 191 219 0 0 chrX 47713176 47713217 -129260923 + L2 LINE L2 3209 3249 -23 463 302 24 52 chrX 47713721 47713933 -129260207 + MIR SINE MIR 29 234 -28 310 214 190 38 chrX 47714007 47714154 -129259986 + MIR3 SINE MIR 1 160 -48 200 267 22 0 chrX 47714317 47714362 -129259778 - L3b LINE CR1 -16 1567 1522 252 244 134 50 chrX 47714819 47714938 -129259202 - L2 LINE L2 -8 3264 3136 429 295 48 48 chrX 47715010 47715220 -129258920 - L2 LINE L2 -888 2426 2217 1026 302 187 32 chrX 47715249 47716487 -129257653 - L2 LINE L2 -1321 1993 564 230 211 44 89 chrX 47716713 47716803 -129257337 + MIR SINE MIR 20 105 -103 * 306 291 12 0 chrX 47716758 47716844 -129257296 - MIR SINE MIR 0 262 176 366 227 33 107 chrX 47716844 47716994 -129257146 + MIR3 SINE MIR 56 194 -14 315 250 0 0 chrX 47717799 47717875 -129256265 + GA-rich Low_complexity Low_complexity 1 76 0 770 227 7 0 chrX 47718025 47718175 -129255965 + MIR3 SINE MIR 44 194 -14 219 114 0 0 chrX 47718233 47718268 -129255872 + (CACCC)n Simple_repeat Simple_repeat 3 37 0 883 97 0 41 chrX 47719154 47719299 -129254841 - MER85 DNA T2_type 0 139 1 2234 166 63 12 chrX 47719371 47719782 -129254358 + MSTB1 LTR MaLR 1 432 0 2414 93 6 3 chrX 47720429 47720740 -129253400 + AluSx SINE Alu 1 312 0 1764 202 0 3 chrX 47720753 47721050 -129253090 + AluJb SINE Alu 1 296 -16 2187 141 0 0 chrX 47721050 47721362 -129252778 + AluSx SINE Alu 1 312 0 200 188 0 0 chrX 47722057 47722089 -129252051 + polypyrimidine Low_complexity Low_complexity 1 32 0 530 319 0 7 chrX 47722212 47722350 -129251790 + MIR3 SINE MIR 43 179 -29 229 189 0 0 chrX 47722905 47722942 -129251198 - tRNA-Val-GTG tRNA tRNA -39 37 1 232 304 98 22 chrX 47723663 47723755 -129250385 + MIR3 SINE MIR 71 169 -39 1833 157 14 7 chrX 47723896 47724026 -129250114 + AluSx SINE Alu 1 129 -179 2339 98 0 23 chrX 47724026 47724332 -129249808 + AluSg SINE Alu 1 299 -11 1833 157 14 7 chrX 47724332 47724507 -129249633 + AluSx SINE Alu 129 308 0 910 162 137 25 chrX 47724552 47724756 -129249384 - MER96B DNA MER1_type? -190 227 1 296 261 163 46 chrX 47724967 47725120 -129249020 - MIR3 SINE MIR -1 207 37 1889 126 94 7 chrX 47725165 47725451 -129248689 + AluSx SINE Alu 1 311 -1 262 231 0 0 chrX 47725743 47725795 -129248345 + L2 LINE L2 3138 3189 -83 2119 116 0 0 chrX 47728789 47729115 -129245025 + AluSx SINE Alu 1 326 0 357 239 231 8 chrX 47729117 47729234 -129244906 + MIR3 SINE MIR 38 180 -28 2329 112 0 3 chrX 47729614 47729927 -129244213 - AluSx SINE Alu 0 312 1 1621 232 47 55 chrX 47730372 47730881 -129243259 - MLT1D LTR MaLR 0 505 1 321 319 137 0 chrX 47731158 47731340 -129242800 + L2 LINE L2 2214 2420 -894 563 216 16 172 chrX 47731371 47731558 -129242582 + MIR SINE MIR 33 173 -89 1536 107 27 163 chrX 47731558 47731896 -129242244 + AluSg1 SINE Alu 1 292 -17 563 216 16 172 chrX 47731896 47731958 -129242182 + MIR SINE MIR 173 243 -19 492 18 0 0 chrX 47731970 47732027 -129242113 + (TA)n Simple_repeat Simple_repeat 2 58 0 2245 101 20 0 chrX 47732027 47732324 -129241816 - AluSx SINE Alu -9 303 1 4265 56 0 67 chrX 47732346 47732720 -129241420 + MER41A LTR ERV1 1 399 -155 2114 134 10 0 chrX 47732720 47732849 -129241291 + AluSx SINE Alu 1 127 -185 239 54 27 0 chrX 47732849 47732886 -129241254 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2114 134 10 0 chrX 47732886 47733063 -129241077 + AluSx SINE Alu 127 310 -2 4265 56 0 67 chrX 47733063 47733159 -129240981 + MER41A LTR ERV1 399 425 -129 2404 91 3 3 chrX 47733159 47733468 -129240672 - AluSc SINE Alu 0 309 1 4265 56 0 67 chrX 47733468 47733590 -129240550 + MER41A LTR ERV1 425 554 0 295 318 45 9 chrX 47733789 47733899 -129240241 + L2 LINE L2 2543 2656 -658 2291 112 0 0 chrX 47734012 47734308 -129239832 + AluSx SINE Alu 1 296 -16 1342 182 36 91 chrX 47734312 47734642 -129239498 - AluJo SINE Alu 0 312 1 845 200 5 38 chrX 47734642 47734707 -129239433 - AluJo/FRAM SINE Alu -8 304 238 3643 140 36 68 chrX 47734707 47735107 -129239033 + LTR8A LTR ERV1 1 369 -358 1761 174 3 3 chrX 47735107 47735451 -129238689 - AluJb SINE Alu 0 344 1 3643 140 36 68 chrX 47735451 47735799 -129238341 + LTR8A LTR ERV1 369 727 0 845 200 5 38 chrX 47735799 47735906 -129238234 - AluJo/FRAM SINE Alu -74 238 134 1905 107 3 27 chrX 47735925 47736279 -129237861 + MER4A LTR ERV1 261 664 0 1845 121 3 83 chrX 47736305 47736376 -129237764 - LTR8 LTR ERV1 -375 316 241 2009 118 7 4 chrX 47736376 47736732 -129237408 - AluSx SINE Alu 0 357 1 1845 121 3 83 chrX 47736732 47736997 -129237143 - LTR8 LTR ERV1 -450 241 6 713 186 8 0 chrX 47736997 47737115 -129237025 - FLAM_C SINE Alu -23 120 2 1251 134 0 0 chrX 47737269 47737441 -129236699 - AluSg/x SINE Alu -7 303 132 2132 109 0 35 chrX 47737441 47737752 -129236388 - AluSq SINE Alu -13 300 1 435 280 85 0 chrX 47737786 47737924 -129236216 - MIR SINE MIR -65 143 3 287 363 0 0 chrX 47738089 47738213 -129235927 + GA-rich Low_complexity Low_complexity 4 127 0 308 312 110 23 chrX 47738290 47738508 -129235632 + MIR SINE MIR 11 247 -15 252 303 79 0 chrX 47739544 47739620 -129234520 - L2 LINE L2 -23 3249 3168 192 278 21 52 chrX 47739649 47739746 -129234394 + MIR SINE MIR 65 158 -104 897 201 98 130 chrX 47739814 47740192 -129233948 - MLT1A1 LTR MaLR -1 364 30 1839 161 10 16 chrX 47740193 47740497 -129233643 - AluJo SINE Alu -10 302 1 185 292 0 0 chrX 47741062 47741110 -129233030 - MIR SINE MIR -11 251 204 1334 149 0 118 chrX 47741297 47741536 -129232604 - MLT1B LTR MaLR 0 390 125 2423 81 7 3 chrX 47741536 47741834 -129232306 - AluSc SINE Alu -10 299 1 2501 77 0 3 chrX 47741843 47742155 -129231985 - AluY SINE Alu 0 311 1 1334 149 0 118 chrX 47742155 47742220 -129231920 - MLT1B LTR MaLR -206 184 113 2299 93 30 0 chrX 47742473 47742774 -129231366 + AluSg SINE Alu 1 310 0 2256 79 4 14 chrX 47745864 47746144 -129227996 - AluSg SINE Alu -33 277 1 768 115 9 0 chrX 47746150 47746263 -129227877 - MLT1B LTR MaLR -269 121 8 2433 101 31 14 chrX 47746831 47747112 -129227028 - THE1B LTR MaLR 0 364 74 4986 42 0 3 chrX 47747112 47747705 -129226435 + LTR10C LTR ERV1 1 591 0 2433 101 31 14 chrX 47747705 47747781 -129226359 - THE1B LTR MaLR -290 74 1 2106 103 11 0 chrX 47748276 47748549 -129225591 - AluSq SINE Alu -4 309 34 453 250 119 28 chrX 47749063 47749250 -129224890 + MIR3 SINE MIR 2 208 0 4953 167 20 16 chrX 47749422 47749782 -129224358 - L1P LINE L1 -3062 3084 2727 2388 98 0 0 chrX 47749782 47750079 -129224061 - AluSq SINE Alu -16 297 1 4953 167 20 16 chrX 47750079 47750740 -129223400 - L1P LINE L1 -3419 2727 2059 2173 107 14 0 chrX 47750915 47751206 -129222934 - AluSg SINE Alu -15 295 1 24 53 0 0 chrX 47751429 47751467 -129222673 + AT_rich Low_complexity Low_complexity 1 38 0 1129 260 79 59 chrX 47751599 47751942 -129222198 - L1MC4a LINE L1 -1872 5936 5574 2172 120 0 10 chrX 47751942 47752241 -129221899 - AluSx SINE Alu -15 297 2 1129 260 79 59 chrX 47752241 47752504 -129221636 - L1MC4a LINE L1 -2234 5574 5318 453 320 88 29 chrX 47752509 47752815 -129221325 - L1MC4a LINE L1 -836 5310 4987 2267 108 0 0 chrX 47752981 47753276 -129220864 - AluSx SINE Alu -17 295 1 450 0 0 0 chrX 47753307 47753357 -129220783 + (TA)n Simple_repeat Simple_repeat 2 51 0 1964 155 0 34 chrX 47753465 47753788 -129220352 + AluJo SINE Alu 1 312 0 234 0 0 0 chrX 47754054 47754084 -129220056 - L1MA4A LINE L1 -174 6129 6100 2230 109 3 7 chrX 47754170 47754464 -129219676 + AluSq SINE Alu 3 295 -18 2116 120 0 0 chrX 47754481 47754813 -129219327 + AluSq SINE Alu 3 334 0 180 365 7 68 chrX 47754981 47755129 -129219011 + L3b LINE CR1 1250 1388 -195 658 202 37 0 chrX 47755150 47755259 -129218881 + FLAM_C SINE Alu 6 118 -25 2265 89 4 0 chrX 47755282 47755601 -129218539 + AluSp SINE Alu 2 321 0 2138 112 3 7 chrX 47755884 47756198 -129217942 - AluSx SINE Alu 0 313 1 12921 85 4 17 chrX 47756225 47757028 -129217112 - L1PA7 LINE L1 0 6469 5657 2093 117 0 7 chrX 47757028 47757343 -129216797 + AluSg SINE Alu 2 314 0 12921 85 4 17 chrX 47757343 47759154 -129214986 - L1PA7 LINE L1 -812 5657 3878 15045 112 11 39 chrX 47759154 47760849 -129213291 - L1PA7 LINE L1 -2881 3580 1840 3736 113 0 4 chrX 47760849 47761362 -129212778 - MER9 LTR ERVK 0 511 1 15045 112 11 39 chrX 47761362 47763278 -129210862 - L1PA7 LINE L1 -4621 1840 8 300 336 74 13 chrX 47763314 47763463 -129210677 - MIR SINE MIR -95 167 10 247 288 62 0 chrX 47764775 47764855 -129209285 + MIR3 SINE MIR 79 163 -45 426 308 34 10 chrX 47765650 47765798 -129208342 + MIR3 SINE MIR 20 161 -51 609 197 45 90 chrX 47765813 47765991 -129208149 + MIR3 SINE MIR 38 207 -1 800 191 70 0 chrX 47766436 47766593 -129207547 - MER58B DNA MER1_type 0 341 174 1027 143 69 23 chrX 47766596 47766771 -129207369 + AluSg/x SINE Alu 130 312 0 200 324 141 42 chrX 47766857 47766999 -129207141 + L2 LINE L2 3109 3264 -8 384 200 20 20 chrX 47767106 47767206 -129206934 + L1MC5 LINE L1 7826 7925 -36 2273 159 87 3 chrX 47768419 47768808 -129205332 - MSTB LTR MaLR -4 422 1 246 255 120 53 chrX 47769536 47769684 -129204456 + MIR SINE MIR 30 183 -65 2208 84 52 42 chrX 47770077 47770386 -129203754 - AluSx SINE Alu 0 312 1 1979 136 0 14 chrX 47771214 47771500 -129202640 + AluSx SINE Alu 1 282 -30 210 37 0 0 chrX 47771503 47771530 -129202610 + (CAA)n Simple_repeat Simple_repeat 2 28 0 249 179 0 119 chrX 47771737 47771821 -129202319 + CT-rich Low_complexity Low_complexity 3 76 0 247 246 15 15 chrX 47772106 47772171 -129201969 + GA-rich Low_complexity Low_complexity 1 65 0 2240 134 0 0 chrX 47772753 47773059 -129201081 - AluSx SINE Alu -4 308 3 292 167 0 0 chrX 47773784 47773832 -129200308 + MIR SINE MIR 102 149 -113 749 135 54 0 chrX 47773836 47773947 -129200193 + FLAM_C SINE Alu 2 118 -15 252 100 0 0 chrX 47773949 47773989 -129200151 + (GA)n Simple_repeat Simple_repeat 2 41 0 406 327 13 19 chrX 47775709 47775865 -129198275 + MIR3 SINE MIR 51 205 -3 224 314 58 23 chrX 47776081 47776167 -129197973 - L2 LINE L2 0 3272 3184 1695 137 114 7 chrX 47776908 47777179 -129196961 - AluSg1 SINE Alu -9 300 1 5581 98 43 22 chrX 47777181 47777525 -129196615 - L1PA15 LINE L1 -10 6155 5820 1913 157 0 0 chrX 47777525 47777812 -129196328 - AluSx SINE Alu -17 295 9 5581 98 43 22 chrX 47777812 47777862 -129196278 - L1PA15 LINE L1 -345 5820 5773 1975 146 3 0 chrX 47777862 47778175 -129195965 - AluJb SINE Alu 0 312 1 5581 98 43 22 chrX 47778175 47778386 -129195754 - L1PA15 LINE L1 -392 5773 5568 1961 152 13 19 chrX 47778386 47778695 -129195445 - AluJo SINE Alu -5 307 1 5581 98 43 22 chrX 47778695 47778937 -129195203 - L1PA15 LINE L1 -597 5568 5326 2221 93 7 13 chrX 47778937 47779270 -129194870 + AluSq SINE Alu 1 331 0 5581 98 43 22 chrX 47779270 47779481 -129194659 - L1PA15 LINE L1 -839 5326 5121 209 136 68 0 chrX 47779485 47779529 -129194611 + T-rich Low_complexity Low_complexity 2 48 0 1705 102 0 9 chrX 47779553 47779778 -129194362 - AluSx SINE Alu -89 223 1 1950 131 4 0 chrX 47779778 47780053 -129194087 - AluSx SINE Alu -16 296 21 209 33 33 0 chrX 47782316 47782346 -129191794 + (TC)n Simple_repeat Simple_repeat 1 31 0 201 147 0 0 chrX 47782444 47782478 -129191662 + (CTG)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chrX 47782697 47782717 -129191423 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1669 116 42 4 chrX 47783354 47783595 -129190545 - AluSq SINE Alu -2 311 62 2307 100 10 0 chrX 47785692 47785993 -129188147 - AluSg SINE Alu -6 304 1 2221 109 0 0 chrX 47786258 47786543 -129187597 + AluSx SINE Alu 1 285 -27 2380 102 0 0 chrX 47787037 47787341 -129186799 - AluSx SINE Alu -7 305 2 409 277 0 18 chrX 47787663 47787775 -129186365 - MIR3 SINE MIR -39 169 60 500 285 21 21 chrX 47788089 47788233 -129185907 - MIR3 SINE MIR -13 195 52 508 302 22 28 chrX 47789206 47789385 -129184755 - MIR3 SINE MIR -1 207 30 583 233 65 0 chrX 47789410 47789555 -129184585 - MIR3 SINE MIR -47 161 7 220 360 79 0 chrX 47789589 47789678 -129184462 - MIR SINE MIR -68 140 45 186 103 0 0 chrX 47790088 47790117 -129184023 + (T)n Simple_repeat Simple_repeat 1 29 0 1310 185 45 58 chrX 47790535 47790848 -129183292 - AluJb SINE Alu -3 309 1 1846 176 0 3 chrX 47790851 47791147 -129182993 - AluJo SINE Alu -17 295 1 405 297 27 0 chrX 47791203 47791314 -129182826 + MIR SINE MIR 31 144 -64 307 275 20 7 chrX 47791655 47791957 -129182183 + GA-rich Low_complexity Low_complexity 1 306 0 277 253 35 23 chrX 47792074 47792161 -129181979 - MIR SINE MIR -76 132 45 188 262 0 16 chrX 47792418 47792479 -129181661 - L2 LINE L2 -212 3060 3001 1917 136 3 30 chrX 47792504 47792806 -129181334 + AluSq SINE Alu 1 294 -19 2212 105 0 3 chrX 47792852 47793138 -129181002 + AluSc SINE Alu 1 285 -24 204 357 112 0 chrX 47794506 47794604 -129179536 - MIR SINE MIR -69 139 31 341 250 83 15 chrX 47794679 47794811 -129179329 + MIR3 SINE MIR 65 205 -3 257 314 38 19 chrX 47795826 47795931 -129178209 + L2 LINE L2 2555 2661 -653 458 275 74 70 chrX 47796064 47796322 -129177818 + MIR SINE MIR 4 262 0 245 209 181 67 chrX 47796408 47796513 -129177627 - MIR3 SINE MIR -25 183 67 2114 132 0 10 chrX 47796514 47796817 -129177323 + AluSq SINE Alu 4 303 -10 643 229 16 83 chrX 47796838 47797030 -129177110 - MIR SINE MIR -50 212 34 537 182 0 50 chrX 47797036 47797157 -129176983 + MER3 DNA MER1_type 90 204 -5 222 211 0 0 chrX 47797433 47797471 -129176669 + (CAT)n Simple_repeat Simple_repeat 2 39 0 827 193 105 48 chrX 47797488 47797716 -129176424 - MIR SINE MIR -17 245 5 387 288 21 47 chrX 47797731 47797967 -129176173 - L2 LINE L2 -926 2388 2159 1356 266 22 5 chrX 47798104 47798514 -129175626 + L2 LINE L2 2351 2767 -547 1280 318 39 8 chrX 47798692 47799302 -129174838 + L2 LINE L2 2347 2983 -330 1017 157 0 0 chrX 47799455 47799602 -129174538 - AluJb SINE Alu -25 287 141 2415 81 3 10 chrX 47799616 47799926 -129174214 - AluSg1 SINE Alu -1 308 1 1912 169 7 0 chrX 47799928 47800218 -129173922 - AluSx SINE Alu -18 294 3 259 235 82 12 chrX 47800237 47800322 -129173818 + L2 LINE L2 3190 3280 -33 438 205 94 17 chrX 47800337 47800454 -129173686 - L2 LINE L2 0 3313 3188 445 294 156 0 chrX 47800550 47800768 -129173372 - MIR SINE MIR -6 256 5 1624 164 30 0 chrX 47800904 47801203 -129172937 + L1MC1 LINE L1 6026 6333 0 290 85 0 0 chrX 47801205 47801252 -129172888 + L1M4b LINE L1 1514 1560 -5299 3042 249 69 49 chrX 47801252 47802227 -129171913 + L1M4 LINE L1 10 1003 -5539 3187 226 21 3 chrX 47802285 47803153 -129170987 + L1M4 LINE L1 3249 4131 -2513 3722 170 9 18 chrX 47803155 47804208 -129169932 - L1P5 LINE L1 -531 5620 4570 2202 144 0 0 chrX 47804208 47804520 -129169620 + AluSx SINE Alu 1 312 0 3346 138 27 13 chrX 47804546 47805198 -129168942 - MER83C-int LTR ERV1 -804 4076 2370 8063 168 43 4 chrX 47805198 47806569 -129167571 - MER83C-int LTR ERV1 -3399 1481 58 1278 199 4 0 chrX 47806681 47806907 -129167233 - MER83C LTR ERV1 0 373 147 837 191 0 86 chrX 47807152 47807277 -129166863 + L1MB7 LINE L1 5975 6076 -108 2166 136 7 0 chrX 47807277 47807587 -129166553 - AluSq SINE Alu -1 312 1 837 191 0 86 chrX 47807587 47807671 -129166469 + L1MB7 LINE L1 6076 6166 -18 253 183 17 104 chrX 47807683 47807798 -129166342 + L1M4b LINE L1 1543 1647 -5208 * 398 286 65 49 chrX 47807786 47808031 -129166109 + L1M4b LINE L1 2452 2700 -4438 321 258 149 55 chrX 47808084 47808161 -129165979 + L1M4b LINE L1 2567 2635 -4503 245 75 25 0 chrX 47808161 47808201 -129165939 + (TA)n Simple_repeat Simple_repeat 2 42 0 321 258 149 55 chrX 47808201 47808452 -129165688 + L1M4b LINE L1 2635 2926 -4212 1255 90 6 11 chrX 47809490 47809668 -129164472 + L1PB1 LINE L1 5973 6149 -2 605 185 104 38 chrX 47809777 47809988 -129164152 - L2 LINE L2 0 3313 3089 604 250 58 34 chrX 47809985 47810193 -129163947 + MIR SINE MIR 49 261 -1 * 1808 290 41 48 chrX 47810193 47810762 -129163378 - L2 LINE L2 -213 3100 2529 1921 147 0 0 chrX 47810762 47811041 -129163099 + AluSx SINE Alu 1 279 -33 207 0 0 0 chrX 47811047 47811070 -129163070 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1808 290 41 48 chrX 47811070 47811411 -129162729 - L2 LINE L2 -789 2524 2182 585 229 173 0 chrX 47811811 47811990 -129162150 + MIR SINE MIR 53 262 0 830 174 0 21 chrX 47812186 47812370 -129161770 - AluSg/x SINE Alu 0 319 139 384 75 0 0 chrX 47812370 47812423 -129161717 + MADE1 DNA Mariner 28 80 0 1523 166 126 7 chrX 47812423 47812701 -129161439 - MER21B LTR ERV1 -552 311 1 729 220 116 0 chrX 47812701 47812874 -129161266 - L1ME3A LINE L1 -340 5830 5638 1446 154 51 45 chrX 47812890 47813201 -129160939 - L1MD1 LINE L1 0 6242 5930 2009 181 108 26 chrX 47813241 47813277 -129160863 - MLT1D LTR MaLR -44 461 429 3832 136 34 7 chrX 47813277 47813895 -129160245 + MER41B LTR ERV1 1 635 0 2009 181 108 26 chrX 47813895 47814284 -129159856 - MLT1D LTR MaLR -76 429 1 180 0 0 0 chrX 47814322 47814342 -129159798 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 388 252 126 0 chrX 47814603 47814714 -129159426 - MER5B DNA MER1_type -53 125 1 1613 127 68 12 chrX 47814780 47815032 -129159108 + AluSx SINE Alu 14 279 -33 219 36 0 0 chrX 47815042 47815070 -129159070 + (GA)n Simple_repeat Simple_repeat 2 29 0 1214 39 13 0 chrX 47815070 47815225 -129158915 + (GGAA)n Simple_repeat Simple_repeat 4 160 0 262 95 24 0 chrX 47815320 47815362 -129158778 + MIR SINE MIR 112 154 -108 323 262 28 9 chrX 47815752 47815859 -129158281 + MIR SINE MIR 84 192 -70 23 0 0 0 chrX 47818323 47818346 -129155794 + AT_rich Low_complexity Low_complexity 1 23 0 261 281 18 0 chrX 47819014 47819103 -129155037 + MIR SINE MIR 93 147 -61 239 301 135 45 chrX 47820069 47820202 -129153938 + MIR SINE MIR 49 193 -69 278 248 9 35 chrX 47820965 47821078 -129153062 + CT-rich Low_complexity Low_complexity 1 110 0 2293 91 0 7 chrX 47821146 47821444 -129152696 + AluY SINE Alu 1 296 -15 214 281 87 1 chrX 47821606 47821697 -129152443 + MIR SINE MIR 47 143 -65 397 221 47 47 chrX 47821989 47822138 -129152002 + L2 LINE L2 3094 3242 -71 469 261 63 21 chrX 47822704 47822846 -129151294 - MIR3 SINE MIR -41 167 20 564 267 25 6 chrX 47823393 47823554 -129150586 + MIR SINE MIR 51 214 -48 1758 104 127 8 chrX 47823928 47824188 -129149952 + AluSg1 SINE Alu 1 291 -18 900 113 0 57 chrX 47824806 47824947 -129149193 - FLAM_C SINE Alu 0 133 1 1669 134 25 28 chrX 47825394 47825714 -129148426 - MER33 DNA MER1_type -2 322 4 191 36 36 0 chrX 47826509 47826537 -129147603 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2347 65 0 0 chrX 47829289 47829568 -129144572 + AluY SINE Alu 1 279 -32 205 51 51 0 chrX 47829569 47829608 -129144532 + A-rich Low_complexity Low_complexity 2 42 0 540 295 39 10 chrX 47830278 47830485 -129143655 - MIR SINE MIR -26 236 24 291 130 0 0 chrX 47831241 47831295 -129142845 + (CA)n Simple_repeat Simple_repeat 2 55 0 201 200 0 0 chrX 47831403 47831438 -129142702 - L2 LINE L2 -17 3296 3262 293 253 199 27 chrX 47831445 47831591 -129142549 - MIR SINE MIR -86 176 6 331 341 11 17 chrX 47831826 47832002 -129142138 + MIR3 SINE MIR 25 199 -9 222 118 0 0 chrX 47832447 47832481 -129141659 + (GA)n Simple_repeat Simple_repeat 1 34 0 533 167 33 120 chrX 47832580 47832730 -129141410 + MSTB2 LTR MaLR 1 137 -320 * 672 214 12 65 chrX 47832727 47832895 -129141245 + MSTB2 LTR MaLR 289 447 -10 2026 129 0 4 chrX 47832895 47833175 -129140965 + AluY SINE Alu 1 279 -32 250 44 22 22 chrX 47833177 47833222 -129140918 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2392 91 3 0 chrX 47833438 47833734 -129140406 + AluSq SINE Alu 1 297 -16 1619 132 48 15 chrX 47835163 47835436 -129138704 + AluJb SINE Alu 1 282 -30 342 0 0 0 chrX 47835439 47835477 -129138663 + (CA)n Simple_repeat Simple_repeat 2 39 0 1933 163 10 13 chrX 47835768 47836081 -129138059 - AluJo SINE Alu 0 312 1 461 246 11 2 chrX 47836159 47836276 -129137864 + MIR SINE MIR 32 147 -62 389 268 185 5 chrX 47836446 47836651 -129137489 - MIR SINE MIR 0 262 21 414 310 46 17 chrX 47837407 47837581 -129136559 - L3 LINE CR1 -211 1366 1188 412 333 68 0 chrX 47838572 47838704 -129135436 - MIR3 SINE MIR -65 143 3 1846 150 34 0 chrX 47839035 47839328 -129134812 - AluJo SINE Alu -1 311 9 257 272 68 19 chrX 47839566 47839669 -129134471 - MIR SINE MIR -81 181 74 216 328 176 8 chrX 47839681 47839800 -129134340 + MIR SINE MIR 123 261 -1 180 342 148 7 chrX 47840582 47840731 -129133409 + MIR SINE MIR 50 219 -43 1979 135 0 16 chrX 47841306 47841609 -129132531 + AluSx SINE Alu 1 298 -14 289 304 42 115 chrX 47841762 47841796 -129132344 + MIR3 SINE MIR 3 38 -170 7904 168 69 26 chrX 47841796 47843802 -129130338 + L1PA13 LINE L1 3888 5936 -227 1459 151 0 0 chrX 47843802 47844027 -129130113 + AluSx SINE Alu 1 225 -87 7904 168 69 26 chrX 47844027 47844266 -129129874 + L1PA13 LINE L1 5936 6163 0 289 304 42 115 chrX 47844266 47844448 -129129692 + MIR3 SINE MIR 38 203 -5 541 306 140 0 chrX 47844809 47844995 -129129145 - MIR SINE MIR -48 214 3 248 221 205 56 chrX 47845063 47845312 -129128828 + L1ME4a LINE L1 5764 6049 -72 759 191 119 44 chrX 47846087 47846381 -129127759 - Charlie4a DNA MER1_type -7 501 186 2229 93 0 13 chrX 47846386 47846522 -129127618 + AluSq SINE Alu 1 137 -176 2080 110 3 7 chrX 47846522 47846830 -129127310 + AluSp SINE Alu 1 307 -6 2229 93 0 13 chrX 47846830 47847004 -129127136 + AluSq SINE Alu 137 307 -6 1181 101 0 0 chrX 47847004 47847162 -129126978 + AluSg/x SINE Alu 132 289 -21 476 167 14 176 chrX 47847251 47847461 -129126679 - Charlie4a DNA MER1_type -330 178 3 193 327 137 59 chrX 47847482 47848016 -129126124 - L2 LINE L2 0 3272 2695 2528 107 14 44 chrX 47848600 47848899 -129125241 + L1MA5A LINE L1 5535 5841 -456 2119 106 0 0 chrX 47848899 47849205 -129124935 + AluSx SINE Alu 1 306 0 2528 107 14 44 chrX 47849205 47849290 -129124850 + L1MA5A LINE L1 5841 5927 -370 2135 113 0 0 chrX 47849290 47849582 -129124558 + AluSx SINE Alu 2 293 -19 742 110 18 0 chrX 47849582 47849691 -129124449 + L1MA5A LINE L1 6172 6282 -15 2528 107 14 44 chrX 47849691 47849722 -129124418 + L1MA5A LINE L1 5925 6282 -15 678 176 15 30 chrX 47849731 47849862 -129124278 + FLAM_C SINE Alu 1 129 -4 36 23 0 0 chrX 47849867 47849910 -129124230 + AT_rich Low_complexity Low_complexity 1 43 0 265 221 3 0 chrX 47851007 47851061 -129123079 - MIR SINE MIR -62 146 100 519 333 0 43 chrX 47852647 47852811 -129121329 - MIR3 SINE MIR -7 201 46 2127 114 0 3 chrX 47852811 47853110 -129121030 + AluSx SINE Alu 1 298 -14 519 333 0 43 chrX 47853110 47853155 -129120985 - MIR3 SINE MIR -162 46 1 1650 147 16 45 chrX 47854010 47854324 -129119816 + AluJb SINE Alu 1 305 -7 304 234 75 32 chrX 47854485 47854579 -129119561 + MIR SINE MIR 103 200 -62 198 150 0 0 chrX 47854621 47854661 -129119479 + (TAAAAA)n Simple_repeat Simple_repeat 5 44 0 1961 125 0 0 chrX 47855188 47855498 -129118642 - AluSx SINE Alu 0 310 1 2171 92 0 23 chrX 47855569 47855874 -129118266 + AluSx SINE Alu 1 298 -14 272 236 86 64 chrX 47856223 47856363 -129117777 - MER5A DNA MER1_type -7 182 40 910 223 90 0 chrX 47856926 47857114 -129117026 - MER63A DNA MER1_type 0 210 6 236 250 0 0 chrX 47857141 47857197 -129116943 - MIR SINE MIR -109 153 98 186 212 0 0 chrX 47857195 47857228 -129116912 + MIR SINE MIR 67 99 -163 * 467 294 25 37 chrX 47857586 47857749 -129116391 + MIR SINE MIR 96 256 -6 253 274 133 44 chrX 47857928 47858041 -129116099 - MIR SINE MIR -65 143 21 2413 68 0 0 chrX 47858105 47858415 -129115725 - AluY SINE Alu -1 310 1 482 317 82 11 chrX 47858863 47859046 -129115094 + MIR3 SINE MIR 2 197 -11 243 0 0 0 chrX 47861630 47861657 -129112483 + (TG)n Simple_repeat Simple_repeat 1 27 0 218 248 97 110 chrX 47861834 47861979 -129112161 - L2 LINE L2 -212 3060 2918 2127 97 6 25 chrX 47862345 47862664 -129111476 - AluSq SINE Alu 0 313 1 378 42 0 0 chrX 47862772 47862820 -129111320 + (CA)n Simple_repeat Simple_repeat 1 48 0 2069 95 7 3 chrX 47863255 47863550 -129110590 + AluSx SINE Alu 2 297 -15 514 234 25 117 chrX 47863679 47863795 -129110345 - MIR SINE MIR -12 250 158 2343 70 0 16 chrX 47863795 47864111 -129110029 - AluY SINE Alu 0 311 1 514 234 25 117 chrX 47864111 47864191 -129109949 - MIR SINE MIR -104 158 72 1720 36 5 0 chrX 47864415 47864637 -129109503 + L1P LINE L1 2994 3216 -2930 1925 95 0 0 chrX 47864947 47865210 -129108930 + AluSq SINE Alu 45 307 -6 2155 115 0 3 chrX 47866077 47866390 -129107750 + AluSq SINE Alu 1 312 -1 201 333 0 0 chrX 47866619 47866676 -129107464 - L2 LINE L2 -16 3256 3200 322 242 11 33 chrX 47867690 47867781 -129106359 + MER5B DNA MER1_type 10 98 -80 205 341 87 16 chrX 47868655 47868781 -129105359 - MIR3 SINE MIR -9 199 65 298 323 20 10 chrX 47869402 47869501 -129104639 + MIR SINE MIR 54 153 -109 819 139 0 23 chrX 47869506 47869635 -129104505 + AluJb SINE Alu 2 127 -185 2162 78 7 11 chrX 47870499 47870818 -129103322 - AluSg SINE Alu 0 318 1 466 314 30 12 chrX 47871065 47871234 -129102906 - MIR SINE MIR -19 243 72 207 0 0 0 chrX 47871926 47871949 -129102191 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 120 0 140 chrX 47871951 47872002 -129102138 - HY4 scRNA scRNA 0 93 61 1659 178 34 0 chrX 47872002 47872294 -129101846 + AluSx SINE Alu 6 307 -5 473 120 0 140 chrX 47872294 47872342 -129101798 - HY4 scRNA scRNA -32 61 8 1663 166 3 3 chrX 47872854 47873137 -129101003 + AluJo SINE Alu 11 293 -19 2265 92 3 0 chrX 47873145 47873448 -129100692 + AluSq SINE Alu 1 304 -9 2173 115 0 3 chrX 47873641 47873954 -129100186 + AluSx SINE Alu 1 312 0 468 51 0 0 chrX 47874439 47874498 -129099642 + (TGG)n Simple_repeat Simple_repeat 2 60 0 481 234 62 55 chrX 47875137 47875265 -129098875 - L2 LINE L2 -4 3309 3181 213 323 83 21 chrX 47875261 47875357 -129098783 + MIR3 SINE MIR 6 107 -101 * 336 318 7 40 chrX 47876115 47876263 -129097877 - MIR SINE MIR -25 237 95 2016 118 0 7 chrX 47876832 47877142 -129096998 + AluSx SINE Alu 1 308 0 294 269 39 9 chrX 47877350 47877467 -129096673 + L1ME LINE L1 5698 5818 -303 315 240 219 0 chrX 47879021 47879117 -129095023 - MIR SINE MIR -55 153 37 2173 113 0 0 chrX 47880101 47880401 -129093739 - AluSx SINE Alu -6 306 7 2214 108 0 10 chrX 47880755 47881069 -129093071 + AluSx SINE Alu 1 311 -1 2307 85 0 0 chrX 47881945 47882240 -129091900 + AluSx SINE Alu 1 295 -17 985 219 70 8 chrX 47882821 47883063 -129091077 - MIR SINE MIR -3 259 3 347 339 23 9 chrX 47883506 47883618 -129090522 + MIR SINE MIR 1 117 -91 346 338 166 0 chrX 47883994 47884139 -129090001 + MIR3 SINE MIR 32 200 -8 1271 71 24 0 chrX 47884253 47884423 -129089717 + AluSp SINE Alu 125 298 -15 207 200 261 0 chrX 47884952 47885017 -129089123 + L2 LINE L2 3232 3313 0 263 270 54 63 chrX 47885077 47885188 -129088952 - MIR3 SINE MIR -15 193 84 230 245 0 20 chrX 47885857 47885906 -129088234 + MIR3 SINE MIR 145 192 -16 442 346 13 13 chrX 47886629 47886785 -129087355 + MIR3 SINE MIR 45 200 -8 477 0 0 0 chrX 47886927 47886980 -129087160 + (TA)n Simple_repeat Simple_repeat 1 53 0 2399 77 0 0 chrX 47887124 47887434 -129086706 - AluSg SINE Alu 0 310 1 361 256 72 133 chrX 47887930 47888110 -129086030 + MIR3 SINE MIR 34 202 -6 200 337 10 0 chrX 47890221 47890322 -129083818 + C-rich Low_complexity Low_complexity 4 105 0 * 216 182 34 45 chrX 47890263 47890351 -129083789 + (CCCCG)n Simple_repeat Simple_repeat 1 87 0 * 242 188 0 71 chrX 47890305 47890390 -129083750 + (CCCGG)n Simple_repeat Simple_repeat 1 79 0 764 292 103 4 chrX 47890517 47890798 -129083342 - L3 LINE CR1 -90 1487 1179 772 158 0 38 chrX 47891117 47891250 -129082890 + FLAM_C SINE Alu 2 129 -14 2021 90 29 0 chrX 47891258 47891537 -129082603 + AluSx SINE Alu 1 287 -25 1576 143 33 50 chrX 47891565 47891865 -129082275 + AluSx SINE Alu 7 301 -11 631 255 16 65 chrX 47892002 47892186 -129081954 + MIR3 SINE MIR 20 194 -14 2105 130 0 0 chrX 47892827 47893128 -129081012 + AluSx SINE Alu 1 301 -11 302 281 56 11 chrX 47893269 47893358 -129080782 - MIR3 SINE MIR -39 169 77 191 274 0 20 chrX 47893363 47893414 -129080726 - L2 LINE L2 -667 2647 2598 4835 156 23 55 chrX 47893424 47893793 -129080347 - L1PA16 LINE L1 -3 6163 5784 2364 75 0 7 chrX 47893793 47894100 -129080040 - AluY SINE Alu -6 305 1 4835 156 23 55 chrX 47894100 47894604 -129079536 - L1PA16 LINE L1 -382 5784 5266 2243 98 0 0 chrX 47894604 47894901 -129079239 - AluSq SINE Alu -16 297 1 4835 156 23 55 chrX 47894901 47895850 -129078290 - L1PA16 LINE L1 -900 5266 4387 1738 161 21 0 chrX 47895854 47896139 -129078001 - AluSx SINE Alu -21 291 1 3952 193 4 38 chrX 47896174 47896623 -129077517 + L1 LINE L1 3564 4027 -2119 2113 123 0 0 chrX 47896623 47896925 -129077215 + AluSx SINE Alu 11 312 0 3952 193 4 38 chrX 47896925 47897012 -129077128 + L1 LINE L1 4027 4115 -2031 2311 80 3 0 chrX 47897012 47897311 -129076829 + AluSg SINE Alu 1 300 -10 3952 193 4 38 chrX 47897311 47897618 -129076522 + L1 LINE L1 4115 4379 -1767 2035 124 3 10 chrX 47898424 47898730 -129075410 + AluSx SINE Alu 2 305 -7 2248 103 3 0 chrX 47898733 47899044 -129075096 + AluSx SINE Alu 1 312 0 349 310 94 44 chrX 47899827 47900030 -129074110 - MIR SINE MIR -22 240 28 186 219 0 0 chrX 47900534 47900575 -129073565 - L2 LINE L2 -23 3249 3209 197 336 42 7 chrX 47900756 47900899 -129073241 + L2 LINE L2 2551 2698 -616 356 40 20 0 chrX 47901561 47901611 -129072529 + (CA)n Simple_repeat Simple_repeat 2 52 0 466 207 119 21 chrX 47901663 47901805 -129072335 + L1M3 LINE L1 5670 5823 -326 2004 126 0 0 chrX 47901810 47902124 -129072016 + AluSq SINE Alu 1 314 0 421 335 113 10 chrX 47902205 47902408 -129071732 + L3 LINE CR1 1284 1507 -70 264 273 68 16 chrX 47902500 47902624 -129071516 - MIR SINE MIR -36 172 34 569 274 22 7 chrX 47902744 47902879 -129071261 - L2 LINE L2 0 3272 3136 378 331 52 13 chrX 47903260 47903414 -129070726 + MIR SINE MIR 18 177 -85 2162 72 6 50 chrX 47903458 47903776 -129070364 + AluY SINE Alu 1 304 -7 2080 100 0 7 chrX 47903801 47904092 -129070048 + AluSq SINE Alu 1 289 -24 291 286 124 9 chrX 47905010 47905115 -129069025 - MIR3 SINE MIR -1 207 91 666 122 0 0 chrX 47905817 47905907 -129068233 - AluS SINE Alu -221 91 2 1972 100 0 35 chrX 47905979 47906269 -129067871 + AluSq SINE Alu 1 280 -33 396 0 0 0 chrX 47906274 47906318 -129067822 + (TAA)n Simple_repeat Simple_repeat 2 45 0 207 275 47 74 chrX 47906327 47906476 -129067664 + L2 LINE L2 3045 3189 -124 409 177 0 0 chrX 47906532 47906611 -129067529 - Alu SINE Alu 0 312 234 935 123 0 0 chrX 47906611 47906741 -129067399 - AluSq/x SINE Alu -183 130 1 1676 176 105 46 chrX 47906742 47907180 -129066960 + MLT1D LTR MaLR 42 505 0 501 333 0 8 chrX 47907180 47907312 -129066828 + L2 LINE L2 3142 3272 0 1798 138 0 82 chrX 47907492 47907832 -129066308 + AluSx SINE Alu 1 312 0 189 295 33 0 chrX 47907928 47907989 -129066151 - L2 LINE L2 0 3272 3210 450 127 0 0 chrX 47908203 47908274 -129065866 + (CA)n Simple_repeat Simple_repeat 2 72 0 1916 111 3 46 chrX 47908290 47908597 -129065543 - AluSg SINE Alu -16 294 1 261 57 0 0 chrX 47908597 47908632 -129065508 + (TA)n Simple_repeat Simple_repeat 1 35 0 487 0 32 0 chrX 47908948 47909011 -129065129 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 1963 106 29 0 chrX 47909014 47909289 -129064851 - AluSg SINE Alu -27 283 1 2305 85 0 0 chrX 47909299 47909604 -129064536 - AluSx SINE Alu -2 310 6 243 204 0 0 chrX 47909604 47909648 -129064492 - AluJ/monomer SINE Alu -258 44 1 966 288 46 79 chrX 47909692 47910297 -129063843 + L2 LINE L2 2443 3030 -242 2221 97 0 3 chrX 47910369 47910667 -129063473 + AluSg SINE Alu 1 297 -13 297 382 30 65 chrX 47910857 47910901 -129063239 - L2 LINE L2 -481 2833 2789 2177 81 0 3 chrX 47910901 47911216 -129062924 - AluSp SINE Alu 0 314 1 297 382 30 65 chrX 47911216 47911432 -129062708 - L2 LINE L2 -525 2789 2581 734 184 44 25 chrX 47911772 47911930 -129062210 - MER46A DNA MER2_type -1 235 75 284 253 24 0 chrX 47911874 47911957 -129062183 + Tigger4(Zombi) DNA MER2_type 2646 2730 -1 * 242 259 153 0 chrX 47912059 47912144 -129061996 - L2 LINE L2 -928 2386 2289 187 333 0 0 chrX 47912283 47912343 -129061797 + L2 LINE L2 2976 3035 -237 306 277 136 63 chrX 47912955 47913290 -129060850 + L2 LINE L2 2730 3098 -174 730 283 0 11 chrX 47913407 47913587 -129060553 + MIR3 SINE MIR 22 199 -9 222 211 58 0 chrX 47913832 47913884 -129060256 - MIR SINE MIR -117 145 91 390 179 211 11 chrX 47913931 47914026 -129060114 + MER81 DNA DNA 1 114 0 683 233 5 85 chrX 47914207 47914396 -129059744 + MER5B DNA MER1_type 2 175 -3 287 282 25 98 chrX 47915105 47915268 -129058872 - L3 LINE CR1 -98 1479 1329 279 259 59 0 chrX 47915272 47915357 -129058783 - L3 LINE CR1 -376 1201 1112 342 0 0 0 chrX 47915491 47915529 -129058611 + (CA)n Simple_repeat Simple_repeat 2 39 0 591 289 118 58 chrX 47915535 47915718 -129058422 - L1MC4a LINE L1 -1896 5912 5741 2385 81 3 0 chrX 47915718 47916028 -129058112 - AluSp SINE Alu -2 311 1 591 289 118 58 chrX 47916028 47916277 -129057863 - L1MC4a LINE L1 -2067 5741 5454 315 0 0 0 chrX 47916279 47916314 -129057826 + (TA)n Simple_repeat Simple_repeat 1 35 0 2257 91 0 0 chrX 47916320 47916617 -129057523 - AluSx SINE Alu -15 297 1 1890 151 0 0 chrX 47916740 47917038 -129057102 - AluSx SINE Alu -14 298 1 2036 105 10 20 chrX 47917300 47917606 -129056534 - AluSq SINE Alu -10 303 1 250 313 122 9 chrX 47917718 47917833 -129056307 + MIR3 SINE MIR 45 172 -36 453 211 0 44 chrX 47917868 47917958 -129056182 + L2 LINE L2 3187 3272 0 202 290 29 103 chrX 47918350 47918420 -129055720 + MIR SINE MIR 40 97 -132 2266 99 0 3 chrX 47918420 47918724 -129055416 + AluSq SINE Alu 1 303 -10 202 290 29 103 chrX 47918724 47918791 -129055349 + MIR SINE MIR 97 167 -62 452 286 66 28 chrX 47918846 47919011 -129055129 - MIR SINE MIR -54 208 34 1952 138 10 3 chrX 47919011 47919316 -129054824 + AluSx SINE Alu 1 307 -5 452 286 66 28 chrX 47919316 47919332 -129054808 - MIR SINE MIR -228 34 20 506 346 108 27 chrX 47919345 47919640 -129054500 - L2 LINE L2 -28 3244 2926 742 263 102 33 chrX 47919768 47920042 -129054098 - L2 LINE L2 -5 3308 3016 866 127 0 8 chrX 47920042 47920176 -129053964 + FLAM_C SINE Alu 6 138 -5 530 228 52 57 chrX 47920178 47920371 -129053769 - L2 LINE L2 -296 3017 2826 2304 99 3 0 chrX 47920432 47920744 -129053396 - AluSp SINE Alu 0 313 1 2291 63 6 35 chrX 47920749 47921065 -129053075 - AluY SINE Alu -4 307 1 2185 100 0 31 chrX 47921090 47921410 -129052730 - AluSq SINE Alu -3 310 1 206 321 72 99 chrX 47921541 47921834 -129052306 - L2 LINE L2 -465 2849 2565 280 282 90 0 chrX 47921933 47922011 -129052129 + MIR3 SINE MIR 109 193 -15 302 299 43 55 chrX 47922598 47922852 -129051288 + L1M4c LINE L1 945 1195 -5189 2320 90 0 0 chrX 47923222 47923534 -129050606 - AluSx SINE Alu 0 312 1 238 325 61 57 chrX 47923860 47924057 -129050083 + MIR SINE MIR 2 187 -63 314 260 21 10 chrX 47924151 47924247 -129049893 - MIR SINE MIR -70 138 42 404 374 16 47 chrX 47924814 47925071 -129049069 + L2 LINE L2 2937 3185 -87 202 185 383 12 chrX 47925091 47925172 -129048968 - MIR SINE MIR 0 262 152 2555 194 10 62 chrX 47925185 47925407 -129048733 + L1MD1 LINE L1 5434 5666 -576 1885 177 87 11 chrX 47925407 47925774 -129048366 - MSTD LTR MaLR 0 396 2 2555 194 10 62 chrX 47925774 47925892 -129048248 + L1MD1 LINE L1 5666 5789 -453 1398 198 14 21 chrX 47925892 47926180 -129047960 + AluJo SINE Alu 5 290 -22 2555 194 10 62 chrX 47926180 47926471 -129047669 + L1MD1 LINE L1 5789 5977 -265 2125 113 7 0 chrX 47926471 47926772 -129047368 + AluSx SINE Alu 1 303 -9 2555 194 10 62 chrX 47926772 47927024 -129047116 + L1MD1 LINE L1 5977 6241 -1 1400 148 21 118 chrX 47927022 47927244 -129046896 + L1MB7 LINE L1 5821 6063 -121 * 1462 179 12 64 chrX 47927244 47927573 -129046567 - AluJo SINE Alu 0 312 1 1400 148 21 118 chrX 47927573 47927673 -129046467 + L1MB7 LINE L1 6063 6171 -13 1989 127 0 0 chrX 47927673 47927965 -129046175 - AluSx SINE Alu -17 295 4 1400 148 21 118 chrX 47927965 47928001 -129046139 + L1MB7 LINE L1 6171 6209 25 2749 87 0 0 chrX 47928001 47928356 -129045784 + THE1A LTR MaLR 1 355 0 11500 92 21 11 chrX 47928356 47928780 -129045360 + THE1A-int LTR MaLR 1 419 -1161 2097 108 0 17 chrX 47928780 47929077 -129045063 - AluSx SINE Alu -15 297 6 11500 92 21 11 chrX 47929077 47930217 -129043923 + THE1A-int LTR MaLR 419 1580 0 2539 93 29 0 chrX 47930217 47930562 -129043578 + THE1A LTR MaLR 1 355 0 512 299 91 67 chrX 47930668 47931073 -129043067 + L1MB2 LINE L1 9 423 -6119 1356 211 53 51 chrX 47931254 47931611 -129042529 + L1MB2 LINE L1 823 1183 -5359 2366 76 0 0 chrX 47931611 47931913 -129042227 + AluY SINE Alu 1 302 -9 1356 211 53 51 chrX 47931913 47932049 -129042091 + L1MB2 LINE L1 1183 1317 -5225 * 2916 224 54 28 chrX 47932037 47932942 -129041198 + L1MB2 LINE L1 2584 3510 -3134 500 171 19 0 chrX 47932946 47933051 -129041089 + CT-rich Low_complexity Low_complexity 4 110 0 948 122 14 0 chrX 47933051 47933198 -129040942 - AluSg/x SINE Alu 0 312 164 4878 224 21 131 chrX 47933200 47933487 -129040653 + L1MB2 LINE L1 3497 3814 -2830 1993 98 4 0 chrX 47933487 47933752 -129040388 + AluSp SINE Alu 1 266 -47 4878 224 21 131 chrX 47933752 47934036 -129040104 + L1MB2 LINE L1 3814 4128 -2516 2259 87 0 3 chrX 47934036 47934336 -129039804 - AluSq SINE Alu -14 299 1 4878 224 21 131 chrX 47934336 47935054 -129039086 + L1MB2 LINE L1 4128 4923 -1721 1965 138 20 0 chrX 47935054 47935358 -129038782 + AluSx SINE Alu 1 310 -2 4878 224 21 131 chrX 47935358 47935465 -129038675 + L1MB2 LINE L1 4923 5040 -1604 1941 142 0 16 chrX 47935465 47935781 -129038359 + AluSx SINE Alu 1 311 -1 4878 224 21 131 chrX 47935781 47936650 -129037490 + L1MB2 LINE L1 5040 5474 -1170 1895 116 35 0 chrX 47936650 47936935 -129037205 + AluY SINE Alu 1 295 -16 4878 224 21 131 chrX 47936935 47937144 -129036996 + L1MB2 LINE L1 5474 5704 -940 * 40448 38 21 1 chrX 47937129 47943161 -129030979 + L1PA2 LINE L1 1 6155 0 25 31 0 0 chrX 47943162 47943194 -129030946 + AT_rich Low_complexity Low_complexity 1 32 0 7045 94 15 0 chrX 47943194 47944979 -129029161 + L1PA7 LINE L1 4352 6152 -2 1890 149 42 0 chrX 47945021 47945309 -129028831 + AluSg SINE Alu 4 303 -7 4507 164 9 38 chrX 47945310 47945438 -129028702 + L1MB2 LINE L1 5679 5809 -860 1926 157 81 19 chrX 47945438 47945808 -129028332 - MSTD LTR MaLR -3 393 1 4507 164 9 38 chrX 47945808 47946404 -129027736 + L1MB2 LINE L1 5809 6372 -297 2240 114 16 0 chrX 47946404 47946710 -129027430 + AluSx SINE Alu 1 311 -1 4507 164 9 38 chrX 47946710 47946980 -129027160 + L1MB2 LINE L1 6372 6648 -21 300 135 58 0 chrX 47946981 47947033 -129027107 - AluJb SINE Alu -11 289 235 3698 169 16 4 chrX 47947076 47947782 -129026358 + L1MB4 LINE L1 5467 6180 0 222 230 380 10 chrX 47947855 47947955 -129026185 - L2 LINE L2 -19 3294 3158 2248 106 0 0 chrX 47947970 47948262 -129025878 - AluY SINE Alu -19 292 1 37 23 0 0 chrX 47948771 47948815 -129025325 + AT_rich Low_complexity Low_complexity 1 44 0 286 248 214 0 chrX 47948968 47949113 -129025027 - MIR SINE MIR -2 260 85 200 86 29 0 chrX 47949402 47949437 -129024703 + (CA)n Simple_repeat Simple_repeat 1 36 0 469 200 45 55 chrX 47949929 47950039 -129024101 - AluJb SINE Alu -81 231 123 2636 141 15 4 chrX 47950468 47950936 -129023204 - L1MC1 LINE L1 -318 6015 5543 338 202 50 10 chrX 47950905 47951004 -129023136 - L1ME3 LINE L1 -140 6022 5920 * 870 214 168 10 chrX 47951171 47951474 -129022666 - L1ME3 LINE L1 -228 5934 5584 2313 161 68 2 chrX 47951639 47952106 -129022034 + L1MB4 LINE L1 5683 6180 0 28027 108 16 23 chrX 47952878 47959214 -129014926 - L1PA7 LINE L1 -6 6463 91 26 50 0 0 chrX 47959233 47959273 -129014867 + AT_rich Low_complexity Low_complexity 1 40 0 40 0 0 0 chrX 47959329 47959369 -129014771 + AT_rich Low_complexity Low_complexity 1 40 0 399 267 73 12 chrX 47959373 47959538 -129014602 - L1ME3 LINE L1 -755 5391 5217 193 366 97 21 chrX 47959685 47959778 -129014362 + L2 LINE L2 3164 3263 -9 2971 211 57 14 chrX 47959900 47959947 -129014193 - L1M4 LINE L1 -663 6153 6109 2751 152 22 2 chrX 47959947 47960395 -129013745 + MSTB2 LTR MaLR 1 457 0 2971 211 57 14 chrX 47960395 47961307 -129012833 - L1M4 LINE L1 -707 6109 5158 2220 128 116 21 chrX 47961312 47961701 -129012439 + MSTA LTR MaLR 1 426 -2 3218 163 0 0 chrX 47961704 47962261 -129011879 + MSTA-int LTR MaLR 1 557 -1094 1861 211 18 0 chrX 48062261 48062597 -128911543 - L1M4 LINE L1 -6444 345 4 1745 257 28 22 chrX 48062606 48063257 -128910883 - L1M4c LINE L1 -4103 1541 1291 2352 77 6 13 chrX 48064226 48064539 -128909601 - AluY SINE Alu 0 311 1 361 111 9 0 chrX 48065735 48065816 -128908324 - L1M4c LINE L1 -4847 1718 1634 8879 215 30 29 chrX 48065822 48066676 -128907464 - L1 LINE L1 -889 5257 4406 1636 206 7 0 chrX 48066676 48066977 -128907163 + AluJo SINE Alu 5 307 -5 8879 215 30 29 chrX 48066977 48067098 -128907042 - L1 LINE L1 -1740 4406 4287 2247 120 0 0 chrX 48067098 48067407 -128906733 - AluSc SINE Alu 0 309 1 8879 215 30 29 chrX 48067407 48068809 -128905331 - L1 LINE L1 -1859 4287 2875 2844 270 65 47 chrX 48068810 48070057 -128904083 - L1M4c LINE L1 -5266 1276 8 1053 317 35 50 chrX 48070067 48070727 -128903413 - L1MEc LINE L1 -5708 688 39 180 125 0 0 chrX 48070734 48070766 -128903374 + (CAA)n Simple_repeat Simple_repeat 2 33 0 373 275 188 0 chrX 48071428 48071577 -128902563 + MIR3 SINE MIR 27 203 -5 468 328 65 32 chrX 48071674 48071921 -128902219 + MIR SINE MIR 5 259 -3 3705 150 20 6 chrX 48072154 48072806 -128901334 - L1PB3 LINE L1 0 6154 5494 188 318 16 16 chrX 48072920 48072983 -128901157 - L3 LINE CR1 -351 1226 1164 575 327 60 16 chrX 48073264 48073512 -128900628 - MIR SINE MIR -1 261 3 230 309 114 16 chrX 48073723 48073846 -128900294 + MIR SINE MIR 63 197 -65 257 185 15 131 chrX 48074602 48074732 -128899408 + MER113 DNA MER1_type? 8 122 -399 328 216 0 54 chrX 48074887 48074961 -128899179 + MER113 DNA MER1_type? 452 521 0 603 291 55 21 chrX 48075469 48075706 -128898434 - MIR SINE MIR -15 247 3 631 181 0 16 chrX 48075756 48075883 -128898257 - L1P5 LINE L1 -544 5612 5488 1061 168 5 5 chrX 48075884 48076075 -128898065 - L1PA15 LINE L1 -1 6164 5974 344 229 86 29 chrX 48076097 48076237 -128897903 - L1 LINE L1 -1680 4466 4319 4392 103 3 3 chrX 48076242 48076874 -128897266 - L1PB1 LINE L1 0 6802 6171 8560 208 14 24 chrX 48076875 48078842 -128895298 - L1PB1 LINE L1 -970 5827 3881 6740 42 1 1 chrX 48078860 48079683 -128894457 - L1PA6 LINE L1 -3 6151 5329 6107 245 33 36 chrX 48079680 48083371 -128890769 - L1PB1 LINE L1 -2901 3896 9 * 838 248 53 27 chrX 48083830 48084050 -128890090 + MIR SINE MIR 7 227 -35 14084 42 2 0 chrX 48084050 48086532 -128887608 + L1PA5 LINE L1 3667 6152 -2 3927 187 24 14 chrX 48086525 48087859 -128886281 + L1P5 LINE L1 4275 5622 -529 * 440 241 69 17 chrX 48087870 48087986 -128886154 + L2 LINE L2 3188 3309 -4 321 303 32 64 chrX 48087992 48088142 -128885998 - L1M4 LINE L1 -1311 4835 4693 1740 118 57 11 chrX 48088142 48088421 -128885719 + AluSx SINE Alu 1 292 -20 321 303 32 64 chrX 48088421 48088488 -128885652 - L1M4 LINE L1 -1453 4693 4625 10131 165 34 25 chrX 48088578 48091456 -128882684 - L1PA13 LINE L1 -5 6158 3264 1000 186 36 27 chrX 48091661 48091715 -128882425 + Tigger1 DNA MER2_type 1 53 -2365 1527 188 61 3 chrX 48091715 48092008 -128882132 - AluJb SINE Alu -1 311 2 1000 186 36 27 chrX 48092008 48092173 -128881967 + Tigger1 DNA MER2_type 53 222 -2196 5141 188 23 8 chrX 48092192 48094149 -128879991 - L1MA4 LINE L1 -1 6579 4598 19791 218 33 25 chrX 48094159 48099205 -128874935 + L1PA12 LINE L1 8 5912 -1672 252 0 0 0 chrX 48099205 48099233 -128874907 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 19791 218 33 25 chrX 48099233 48100171 -128873969 + L1PA12 LINE L1 5912 6841 -743 683 274 17 11 chrX 48100176 48100355 -128873785 + LTR28 LTR ERV1 1 180 -840 763 251 83 55 chrX 48100383 48100866 -128873274 + MER52A LTR ERV1 278 1470 -35 538 279 6 6 chrX 48100869 48101027 -128873113 + MER52A LTR ERV1 1598 1755 0 4861 117 14 7 chrX 48101027 48101769 -128872371 + L1PA11 LINE L1 5405 6151 -23 3366 198 40 24 chrX 48101779 48104070 -128870070 - L1MA4 LINE L1 -1837 4589 2062 3717 139 217 88 chrX 48104072 48104211 -128869929 + MER11B LTR ERVK 1 121 -1115 2212 111 0 19 chrX 48104211 48104518 -128869622 - AluY SINE Alu -10 301 1 3717 139 217 88 chrX 48104518 48105469 -128868671 + MER11B LTR ERVK 121 1232 -4 1277 236 29 5 chrX 48105474 48105855 -128868285 - L1MA4 LINE L1 -4361 2065 1564 299 164 0 0 chrX 48105865 48105926 -128868214 - L1PB1 LINE L1 -22 6845 6785 * 43495 43 1 3 chrX 48105924 48112089 -128862051 - L1PA3 LINE L1 0 6155 1 13173 164 66 20 chrX 48112089 48113154 -128860986 - L1PB1 LINE L1 -68 6799 5784 362 131 0 7 chrX 48113154 48113219 -128860921 - Alu SINE Alu -6 296 242 13173 164 66 20 chrX 48113219 48113819 -128860321 - L1PB1 LINE L1 -1083 5784 5213 450 0 0 0 chrX 48113819 48113869 -128860271 + (TTA)n Simple_repeat Simple_repeat 2 51 0 13173 164 66 20 chrX 48113869 48116619 -128857521 - L1PB1 LINE L1 -1654 5213 1982 477 50 0 0 chrX 48116619 48116679 -128857461 + (TG)n Simple_repeat Simple_repeat 1 60 0 13173 164 66 20 chrX 48116679 48118091 -128856049 - L1PB1 LINE L1 -4885 1982 636 1300 131 0 0 chrX 48118093 48118292 -128855848 - L1PB1 LINE L1 -6663 200 2 5236 253 44 27 chrX 48118296 48120420 -128853720 - L1M1 LINE L1 -4705 2860 12 11280 163 34 18 chrX 48120420 48122525 -128851615 + Tigger1 DNA MER2_type 217 2355 -63 249 224 0 0 chrX 48122525 48122583 -128851557 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 429 244 0 0 chrX 48122600 48122682 -128851458 + Tigger1 DNA MER2_type 2337 2418 0 609 86 12 0 chrX 48122868 48122949 -128851191 - MSTB LTR MaLR -344 82 1 541 135 42 0 chrX 48122949 48123042 -128851098 + MER46A DNA MER2_type 140 236 0 260 224 0 0 chrX 48123143 48123201 -128850939 + L1PB1 LINE L1 5730 5787 -517 29 28 0 0 chrX 48123302 48123338 -128850802 + AT_rich Low_complexity Low_complexity 1 36 0 594 292 0 7 chrX 48123573 48123710 -128850430 - L2 LINE L2 0 3272 3137 618 90 57 26 chrX 48123727 48124021 -128850119 + (TA)n Simple_repeat Simple_repeat 1 303 0 1750 152 10 3 chrX 48124122 48124432 -128849708 + L1PB1 LINE L1 5832 6143 -8 23 0 0 0 chrX 48124436 48124459 -128849681 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chrX 48124553 48124576 -128849564 + (A)n Simple_repeat Simple_repeat 1 23 0 1996 281 46 17 chrX 48124576 48125467 -128848673 + L1MC/D LINE L1 2963 3879 -2267 369 0 0 0 chrX 48125471 48125512 -128848628 + (TA)n Simple_repeat Simple_repeat 1 41 0 13089 115 51 88 chrX 48125512 48125920 -128848220 - Tigger1 DNA MER2_type 0 2418 1997 877 209 0 0 chrX 48125920 48126068 -128848072 - FRAM SINE Alu -16 160 13 13089 115 51 88 chrX 48126068 48128016 -128846124 - Tigger1 DNA MER2_type -421 1997 6 4593 214 70 12 chrX 48128031 48129523 -128844617 + L1MC/D LINE L1 3909 5484 -743 4013 182 20 8 chrX 48129511 48130307 -128843833 + L1MB8 LINE L1 5362 6167 -11 * 6670 147 44 18 chrX 48130523 48131607 -128842533 + Tigger3b DNA MER2_type 2 1121 -1907 2258 113 62 6 chrX 48131607 48131961 -128842179 - THE1C LTR MaLR 0 375 2 6670 147 44 18 chrX 48131961 48132075 -128842065 + Tigger3b DNA MER2_type 1121 1231 0 202 263 17 51 chrX 48132354 48132472 -128841668 + L2 LINE L2 2147 2260 -1054 793 199 152 28 chrX 48132521 48132732 -128841408 + MIR SINE MIR 25 261 -1 210 355 133 18 chrX 48132749 48133081 -128841059 + L2 LINE L2 2350 2719 -595 274 204 114 23 chrX 48133450 48133538 -128840602 - MER112 DNA MER1_type -50 210 115 716 271 70 76 chrX 48133763 48134065 -128840075 + LTR41 LTR ERVL 352 651 -122 6621 77 16 0 chrX 48134065 48135745 -128838395 - L1PA8 LINE L1 -3 6484 4789 5836 93 35 2 chrX 48135745 48136740 -128837400 + MER11B LTR ERVK 1 1004 -67 14389 103 13 10 chrX 48136774 48139088 -128835052 - L1PA8 LINE L1 -1668 4793 2473 10142 136 27 22 chrX 48139084 48141045 -128833095 - L1PA8 LINE L1 -4482 1979 6 * 250 161 7 182 chrX 48141051 48141194 -128832946 + LTR41 LTR ERVL 641 758 -15 315 0 0 0 chrX 48141237 48141272 -128832868 + (TG)n Simple_repeat Simple_repeat 2 36 0 673 315 195 29 chrX 48141986 48142500 -128831640 + L3 LINE CR1 141 739 -838 888 166 162 8 chrX 48142522 48142775 -128831365 - Charlie1a DNA MER1_type -5 1450 1159 4226 166 129 70 chrX 48142864 48143106 -128831034 - L1MCa LINE L1 -5229 1197 971 1599 59 14 18 chrX 48143106 48143325 -128830815 - L1PA10 LINE L1 -2 6166 5949 4226 166 129 70 chrX 48143325 48144194 -128829946 - L1MCa LINE L1 -5455 971 21 3293 210 52 21 chrX 48144194 48145047 -128829093 - Charlie1a DNA MER1_type -572 883 5 2596 115 53 29 chrX 48145165 48145583 -128828557 - MSTA LTR MaLR 0 428 1 8698 175 30 7 chrX 48145583 48147197 -128826943 - MSTA-int LTR MaLR 0 1651 1 2635 146 24 0 chrX 48147197 48147615 -128826525 - MSTA LTR MaLR 0 428 1 546 202 9 0 chrX 48147633 48147747 -128826393 - L1MC1 LINE L1 -6 6327 6213 391 303 86 0 chrX 48147778 48147930 -128826210 + MIR SINE MIR 82 246 -16 231 276 0 0 chrX 48147965 48148023 -128826117 + L3 LINE CR1 755 812 -765 1087 206 107 29 chrX 48148025 48148335 -128825805 - MLT1D LTR MaLR 0 505 172 2168 161 49 5 chrX 48148355 48148765 -128825375 - MSTA LTR MaLR 0 428 1 633 154 22 37 chrX 48148765 48148901 -128825239 - MLT1D LTR MaLR -349 156 23 369 296 110 78 chrX 48148907 48149165 -128824975 + L3 LINE CR1 808 1083 -494 7386 122 35 3 chrX 48149165 48150356 -128823784 + Tigger3b DNA MER2_type 1 1229 -2 369 296 110 78 chrX 48150356 48150469 -128823671 + L3 LINE CR1 1083 1191 -386 * 826 245 68 24 chrX 48150457 48150706 -128823434 - MIR SINE MIR 0 262 3 365 331 16 8 chrX 48150722 48150849 -128823291 + L3 LINE CR1 1217 1344 -233 261 182 0 0 chrX 48150947 48151002 -128823138 + Tigger3(Golem) DNA MER2_type 2713 2767 -262 * 497 130 0 0 chrX 48151001 48151078 -128823062 - Tigger3(Golem) DNA MER2_type -309 2720 2644 556 234 143 22 chrX 48151434 48151665 -128822475 + MER112 DNA MER1_type 1 259 -1 750 251 102 78 chrX 48151695 48152146 -128821994 + L2 LINE L2 675 1136 -2178 1890 179 11 22 chrX 48152665 48153034 -128821106 - MLT1A1 LTR MaLR 0 365 1 350 222 282 6 chrX 48153136 48153314 -128820826 + L1MC4 LINE L1 6443 6676 -1366 * 939 212 62 59 chrX 48153310 48153649 -128820491 + L1MC4 LINE L1 7550 7889 -153 1503 199 41 7 chrX 48153714 48154006 -128820134 - AluJo SINE Alu -10 302 1 14548 166 16 5 chrX 48154082 48160329 -128813811 - L1MA1 LINE L1 0 7721 1403 2800 101 18 2 chrX 48160331 48160766 -128813374 + L1MA2 LINE L1 5863 6304 0 2269 269 75 12 chrX 48160767 48161503 -128812637 + L2 LINE L2 1765 2546 -768 749 278 19 15 chrX 48161511 48161774 -128812366 + L1MDa LINE L1 34 297 -6243 2221 226 40 51 chrX 48162257 48163049 -128811091 + L1MDa LINE L1 813 1556 -4987 1627 176 75 17 chrX 48163059 48163354 -128810786 + AluJo SINE Alu 1 312 0 2260 258 67 67 chrX 48163390 48165450 -128808690 + L1M3d LINE L1 3 1413 -4516 9786 206 69 17 chrX 48165481 48169868 -128804272 + L1PA13 LINE L1 1 4622 -2175 384 138 0 0 chrX 48169866 48169931 -128804209 + L1M1 LINE L1 1544 1608 -5957 * 286 67 0 0 chrX 48169921 48169966 -128804174 + L1M1 LINE L1 2202 2246 -5319 * 399 66 100 27 chrX 48170081 48170414 -128803726 + (TA)n Simple_repeat Simple_repeat 1 357 0 22 56 0 0 chrX 48170425 48170461 -128803679 + AT_rich Low_complexity Low_complexity 1 36 0 428 61 110 6 chrX 48170461 48170624 -128803516 + (TA)n Simple_repeat Simple_repeat 1 180 0 842 286 14 5 chrX 48170663 48170876 -128803264 + MIR SINE MIR 48 262 0 337 153 0 0 chrX 48170926 48170985 -128803155 - L1PB1 LINE L1 -2 6149 6091 1264 44 27 6 chrX 48170985 48171168 -128802972 + L1P LINE L1 5170 5356 -790 7657 13 0 1 chrX 48171192 48172599 -128801541 - L1HS LINE L1 0 6155 4750 16837 23 0 0 chrX 48172599 48174680 -128799460 + L1HS LINE L1 2654 4734 -1412 1983 117 0 12 chrX 48174684 48174767 -128799373 - L1PB1 LINE L1 -53 6098 6016 6418 189 26 2 chrX 48174767 48174992 -128799148 - L1PA11 LINE L1 -159 6015 5797 267 31 0 0 chrX 48174992 48175024 -128799116 + (TG)n Simple_repeat Simple_repeat 2 33 0 6418 189 26 2 chrX 48175024 48176883 -128797257 - L1PA11 LINE L1 -377 5797 3854 10996 184 20 6 chrX 48177949 48180018 -128794122 + L1MA3 LINE L1 13 2110 -5455 280 170 0 0 chrX 48180018 48180065 -128794075 - THE1C LTR MaLR 0 355 309 485 49 111 6 chrX 48180071 48180233 -128793907 + (TA)n Simple_repeat Simple_repeat 2 180 0 1729 112 64 22 chrX 48180239 48180553 -128793587 - THE1C LTR MaLR -48 327 1 385 152 196 0 chrX 48180555 48180595 -128793545 + L1MA3 LINE L1 2108 2139 -5426 369 0 0 0 chrX 48180595 48180636 -128793504 + (GA)n Simple_repeat Simple_repeat 1 41 0 385 152 196 0 chrX 48180636 48180687 -128793453 + L1MA3 LINE L1 2139 2217 -5348 * 3633 169 7 15 chrX 48180672 48181425 -128792715 + L1PA11 LINE L1 3095 3841 -2305 6003 96 22 16 chrX 48181428 48181540 -128792600 + L1PA11 LINE L1 5082 5192 -982 2008 139 3 13 chrX 48181540 48181849 -128792291 + AluSx SINE Alu 1 306 -6 6003 96 22 16 chrX 48181849 48182843 -128791297 + L1PA11 LINE L1 5192 6174 0 5030 125 50 21 chrX 48182843 48183182 -128790958 + L1MA3 LINE L1 2194 2522 -5043 1489 186 8 11 chrX 48183182 48183445 -128790695 + AluSx SINE Alu 37 298 -14 5030 125 50 21 chrX 48183445 48184059 -128790081 + L1MA3 LINE L1 2522 3175 -4390 3416 137 4 0 chrX 48184059 48184612 -128789528 - HERVK22 LTR ERVK -2628 4209 3655 311 170 0 0 chrX 48184611 48184664 -128789476 - HERVK22 LTR ERVK -4292 2545 2493 * 502 98 24 12 chrX 48184656 48184738 -128789402 - HERVK22 LTR ERVK -3930 2907 2825 250 146 0 0 chrX 48184814 48184855 -128789285 - HERVK22 LTR ERVK -4470 2367 2327 3753 149 12 29 chrX 48185315 48186007 -128788133 - HERVK22 LTR ERVK -6149 688 9 1550 178 17 126 chrX 48186164 48186703 -128787437 - LTR22B LTR ERVK -12 480 1 7594 190 50 22 chrX 48186703 48187871 -128786269 + L1MA3 LINE L1 3174 4308 -3257 1345 43 0 0 chrX 48187871 48188032 -128786108 - L1PA3 LINE L1 -3 6152 5992 7594 190 50 22 chrX 48188032 48188096 -128786044 + L1MA3 LINE L1 4308 4369 -3196 1891 158 150 3 chrX 48188096 48188469 -128785671 + MSTA LTR MaLR 1 428 0 7594 190 50 22 chrX 48188469 48189204 -128784936 + L1MA3 LINE L1 4369 5082 -2483 1847 121 76 0 chrX 48189204 48189468 -128784672 + AluSc SINE Alu 1 284 -25 324 0 0 0 chrX 48189470 48189506 -128784634 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 7594 190 50 22 chrX 48189506 48189983 -128784157 + L1MA3 LINE L1 5082 5683 -1882 22489 32 7 0 chrX 48189983 48193474 -128780666 + L1PA2 LINE L1 2660 6155 0 7594 190 50 22 chrX 48193474 48193646 -128780494 + L1MA3 LINE L1 5683 5849 -1716 5375 139 14 14 chrX 48193647 48194611 -128779529 + L1MA3 LINE L1 6761 7724 0 289 51 0 0 chrX 48194645 48194684 -128779456 - MADE1 DNA Mariner 0 80 42 4217 83 5 0 chrX 48195158 48195738 -128778402 + L1PB1 LINE L1 5569 6151 0 2074 118 7 3 chrX 48195769 48196065 -128778075 - AluSx SINE Alu -14 298 2 446 138 0 0 chrX 48197333 48197413 -128776727 + L1MA6 LINE L1 6220 6299 -1 189 298 70 0 chrX 48198150 48198207 -128775933 - MIR SINE MIR -6 256 196 276 308 128 23 chrX 48198440 48198573 -128775567 - L2 LINE L2 -4 3309 3163 4869 155 33 11 chrX 48198713 48199783 -128774357 - L1PA15 LINE L1 -6 6159 5058 318 109 0 0 chrX 48199784 48199830 -128774310 + LTR19A LTR ERV1 1 46 -440 7509 119 14 2 chrX 48199844 48201825 -128772315 - L1PA8 LINE L1 -1 6171 4178 5915 125 9 19 chrX 48201826 48202851 -128771289 - L1PA8 LINE L1 -2061 4085 3072 13263 120 11 1 chrX 48202860 48205707 -128768433 - L1PA7 LINE L1 0 6469 3595 6447 115 10 10 chrX 48205707 48206696 -128767444 - L1PA7 LINE L1 -5472 989 1 539 191 127 8 chrX 48206698 48206824 -128767316 - Tigger4(Zombi) DNA MER2_type -2590 141 1 4906 155 29 22 chrX 48206940 48207860 -128766280 + L1PA8 LINE L1 6 932 -5529 2452 129 2 17 chrX 48207987 48208390 -128765750 + L1PA8 LINE L1 930 1326 -5135 * 9973 123 16 0 chrX 48208385 48210113 -128764027 + L1PA8 LINE L1 3987 5744 -743 36373 88 8 2 chrX 48210113 48216227 -128757913 + L1PA5 LINE L1 5 6154 0 5235 99 1 21 chrX 48216235 48217009 -128757131 + L1PA8 LINE L1 5728 6486 -1 309 241 105 38 chrX 48217074 48217207 -128756933 + L1ME4a LINE L1 5968 6109 -12 1580 245 45 84 chrX 48217548 48218259 -128755881 + LTR8 LTR ERV1 1 683 -8 22 35 0 0 chrX 48218295 48218324 -128755816 + AT_rich Low_complexity Low_complexity 1 29 0 40694 50 3 2 chrX 48218350 48224497 -128749643 + L1PA3 LINE L1 2 6152 -3 467 289 100 15 chrX 48224555 48224894 -128749246 + L1M4 LINE L1 2110 2477 -3669 1728 167 3 10 chrX 48224999 48225312 -128748828 + AluJb SINE Alu 9 319 0 1492 208 0 42 chrX 48225456 48225591 -128748549 + AluJo SINE Alu 1 140 -172 2110 125 0 13 chrX 48225591 48225903 -128748237 + AluSx SINE Alu 1 308 -4 1492 208 0 42 chrX 48225903 48226079 -128748061 + AluJo SINE Alu 140 299 -13 668 244 96 78 chrX 48226362 48226402 -128747738 + L1M4 LINE L1 3591 3629 -2517 1725 164 3 23 chrX 48226402 48226701 -128747439 - AluJb SINE Alu -19 293 1 668 244 96 78 chrX 48226701 48227014 -128747126 + L1M4 LINE L1 3629 3956 -2190 1620 183 28 7 chrX 48227014 48227304 -128746836 + AluJb SINE Alu 1 296 -16 668 244 96 78 chrX 48227304 48227399 -128746741 + L1M4 LINE L1 3956 4048 -2098 1300 165 30 22 chrX 48227401 48227668 -128746472 - AluJo SINE Alu -6 306 38 28 0 0 0 chrX 48228003 48228031 -128746109 + AT_rich Low_complexity Low_complexity 1 28 0 14716 39 6 4 chrX 48228031 48230621 -128743519 - L1PA3 LINE L1 -3 6152 3559 2310 92 19 6 chrX 48231579 48231904 -128742236 + L1PA8A LINE L1 5801 6129 -2 2041 107 11 7 chrX 48232454 48232787 -128741353 - AluY SINE Alu 0 335 2 297 219 70 62 chrX 48232855 48232983 -128741157 - MIR SINE MIR -74 188 60 4097 271 41 61 chrX 48233373 48235302 -128738838 + L1MA8 LINE L1 1 1920 -5110 371 261 0 0 chrX 48235292 48235403 -128738737 + L1MA8 LINE L1 3724 3834 -3272 * 692 259 5 10 chrX 48235417 48235610 -128738530 + L1PB1 LINE L1 6 197 -6666 * 7830 195 70 19 chrX 48235607 48238585 -128735555 + L1PB1 LINE L1 1392 4760 -2107 1785 160 0 26 chrX 48238585 48238891 -128735249 + AluSx SINE Alu 1 298 -14 7830 195 70 19 chrX 48238891 48241111 -128733029 + L1PB1 LINE L1 4760 6866 -1 23 0 0 0 chrX 48241111 48241134 -128733006 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chrX 48241264 48241299 -128732841 + AT_rich Low_complexity Low_complexity 1 35 0 10101 189 25 13 chrX 48241299 48244517 -128729623 + L1MA8 LINE L1 3820 7080 -171 2019 125 0 3 chrX 48244517 48244806 -128729334 + AluSx SINE Alu 11 298 -14 24 53 0 0 chrX 48244874 48244912 -128729228 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chrX 48244945 48244968 -128729172 + AT_rich Low_complexity Low_complexity 1 23 0 2789 248 77 22 chrX 48245751 48247195 -128726945 + L1MDa LINE L1 21 1769 -4771 942 179 111 28 chrX 48247203 48247527 -128726613 + L1MDa LINE L1 1983 2333 -4207 1849 111 49 8 chrX 48247542 48247924 -128726216 + LTR7 LTR ERV1 1 450 0 1801 197 42 26 chrX 48247924 48248376 -128725764 + HERVH LTR ERV1 1 459 -7254 15713 139 8 22 chrX 48248434 48251263 -128722877 + HERVH LTR ERV1 800 3587 -4126 6677 131 5 4 chrX 48251266 48252509 -128721631 + HERVH LTR ERV1 3840 5286 -1805 2664 111 7 11 chrX 48252513 48252946 -128721194 + HERVH LTR ERV1 7283 7713 0 1981 104 33 8 chrX 48252946 48253336 -128720804 + LTR7 LTR ERV1 1 450 0 306 125 0 0 chrX 48253354 48253402 -128720738 + (TA)n Simple_repeat Simple_repeat 1 48 0 2068 229 42 9 chrX 48253403 48254396 -128719744 + L1MDa LINE L1 2344 3372 -3168 445 35 0 0 chrX 48254396 48254453 -128719687 + L1MA2 LINE L1 6199 6255 -49 953 185 15 0 chrX 48254465 48254660 -128719480 + L1PBa LINE L1 3 200 -6663 10620 181 66 13 chrX 48254660 48259140 -128715000 + L1PBa LINE L1 634 5352 -1510 5475 164 19 100 chrX 48259147 48260445 -128713695 + L1PB1 LINE L1 3593 4994 -1157 6018 53 1 0 chrX 48259640 48260444 -128713696 - L1PA4 LINE L1 -3548 2598 1794 21538 52 7 0 chrX 48260445 48263985 -128710155 + L1PA4 LINE L1 2608 6155 0 9969 67 7 1 chrX 48263988 48266070 -128708070 + L1PA5 LINE L1 4068 6154 0 5475 164 19 100 chrX 48266070 48267578 -128706562 + L1PB1 LINE L1 4996 6151 0 320 111 0 0 chrX 48267589 48267643 -128706497 + L1MA1 LINE L1 6245 6298 -4 207 0 0 0 chrX 48267691 48267714 -128706426 + (A)n Simple_repeat Simple_repeat 1 23 0 346 327 41 28 chrX 48267714 48268102 -128706038 + L1M4 LINE L1 2963 3355 -2791 310 29 0 0 chrX 48318240 48318275 -128655865 + L1PA4 LINE L1 6107 6141 -14 464 304 7 15 chrX 48318309 48318444 -128655696 + MER5B DNA MER1_type 5 138 -40 1100 222 66 40 chrX 48318447 48318871 -128655269 - L1MC5 LINE L1 -32 7929 7495 625 256 27 58 chrX 48318875 48319098 -128655042 + MLT1D LTR MaLR 2 217 -288 264 233 0 0 chrX 48319174 48319247 -128654893 + (CA)n Simple_repeat Simple_repeat 2 74 0 342 275 58 47 chrX 48319284 48319455 -128654685 - MIR SINE MIR -50 212 40 362 250 227 19 chrX 48319642 48319858 -128654282 - MIR SINE MIR 0 262 2 220 291 12 35 chrX 48320801 48320887 -128653253 + MIR SINE MIR 34 117 -91 797 21 11 88 chrX 48320890 48321277 -128652863 + (TA)n Simple_repeat Simple_repeat 1 357 0 2145 110 0 17 chrX 48321277 48321567 -128652573 - AluSx SINE Alu -27 285 1 1410 59 0 0 chrX 48321630 48321799 -128652341 - AluY SINE Alu -17 294 126 2568 46 0 0 chrX 48321801 48322107 -128652033 - AluY SINE Alu -5 306 1 729 177 9 0 chrX 48322637 48322750 -128651390 + MER81 DNA DNA 1 114 0 298 232 121 0 chrX 48323239 48323338 -128650802 - L1ME2 LINE L1 -10 6154 6044 2438 207 58 20 chrX 48323344 48323880 -128650260 + MER68 LTR ERV1 1 556 -6 1080 198 36 40 chrX 48323887 48324165 -128649975 - L1ME2 LINE L1 -125 6039 5763 2610 102 3 11 chrX 48324165 48324518 -128649622 - L1PB1 LINE L1 0 6151 5802 1396 99 25 10 chrX 48324518 48324720 -128649420 - THE1B LTR MaLR -159 205 1 10279 129 52 3 chrX 48324720 48326226 -128647914 - THE1B-int LTR MaLR 0 1580 1 2789 112 0 6 chrX 48326226 48326592 -128647548 - THE1B LTR MaLR 0 364 1 10919 177 91 24 chrX 48326600 48327077 -128647063 - L1PBa LINE L1 -1538 5324 4880 2095 150 0 6 chrX 48327077 48327390 -128646750 - AluSx SINE Alu -1 311 1 10919 177 91 24 chrX 48327390 48331355 -128642785 - L1PBa LINE L1 -1982 4880 591 656 298 15 49 chrX 48332187 48332452 -128641688 + MIR SINE MIR 7 262 0 281 338 110 36 chrX 48332461 48332961 -128641179 - L2 LINE L2 -1036 2278 1742 263 228 25 38 chrX 48334198 48334277 -128639863 - L2 LINE L2 -15 3298 3221 899 287 0 5 chrX 48334402 48334611 -128639529 - MIR SINE MIR -53 209 2 534 269 40 34 chrX 48334711 48334886 -128639254 - MIR SINE MIR -82 180 5 234 0 0 0 chrX 48335208 48335234 -128638906 + (CAT)n Simple_repeat Simple_repeat 3 28 0 27324 111 9 15 chrX 48335597 48341367 -128632773 + L1PA7 LINE L1 717 6466 -3 334 214 143 52 chrX 48341455 48341578 -128632562 + MIR SINE MIR 39 143 -65 390 299 45 19 chrX 48341823 48341948 -128632192 + MIR SINE MIR 23 154 -108 406 169 39 0 chrX 48341948 48342025 -128632115 - MADE1 DNA Mariner 0 80 1 390 299 45 19 chrX 48342025 48342056 -128632084 + MIR SINE MIR 154 183 -79 596 219 104 45 chrX 48342058 48342259 -128631881 + MLT1G1 LTR MaLR 1 213 -336 432 232 80 24 chrX 48342269 48342394 -128631746 - MIR SINE MIR -108 154 23 620 224 154 31 chrX 48342674 48342902 -128631238 + MLT1G1 LTR MaLR 300 595 0 188 211 26 0 chrX 48343335 48343373 -128630767 - L2 LINE L2 -16 3297 3259 * 453 121 0 72 chrX 48343360 48343443 -128630697 - MIR SINE MIR -80 182 106 548 341 29 16 chrX 48343647 48343893 -128630247 + MIR SINE MIR 13 261 -1 1266 203 66 87 chrX 48345698 48345812 -128628328 + LTR37B LTR ERV1 7 122 -346 621 236 33 107 chrX 48345812 48346054 -128628086 - MER58A DNA MER1_type 0 224 1 1266 203 66 87 chrX 48346054 48346411 -128627729 + LTR37B LTR ERV1 122 468 0 398 357 141 12 chrX 48347030 48347285 -128626855 - L3 LINE CR1 -13 1564 1277 324 256 12 47 chrX 48347501 48347587 -128626553 - MIR SINE MIR -103 105 23 229 213 0 0 chrX 48347588 48347635 -128626505 + (TATG)n Simple_repeat Simple_repeat 4 50 0 442 345 83 9 chrX 48347913 48348142 -128625998 + MIR SINE MIR 5 250 -12 505 305 52 11 chrX 48348155 48348329 -128625811 - MIR3 SINE MIR -13 195 15 945 188 44 0 chrX 48348335 48348516 -128625624 + MER5A DNA MER1_type 1 189 0 410 326 14 7 chrX 48348808 48348955 -128625185 - L3 LINE CR1 -19 1558 1411 506 281 94 6 chrX 48349122 48349293 -128624847 - MIR3 SINE MIR 0 208 23 1130 151 77 182 chrX 48349730 48350054 -128624086 + AluJo SINE Alu 1 290 -12 520 240 51 31 chrX 48350081 48350291 -128623849 + MER20B DNA MER1_type 1 218 -1 1138 163 25 0 chrX 48350296 48350498 -128623642 + MER3 DNA MER1_type 2 208 -1 357 242 99 87 chrX 48351321 48351482 -128622658 - MIR SINE MIR -98 164 2 428 236 9 19 chrX 48351684 48351790 -128622350 - MIR SINE MIR -65 143 39 238 324 40 14 chrX 48351809 48351883 -128622257 + MIR SINE MIR 23 98 -164 738 255 60 130 chrX 48351955 48352550 -128621590 - L2 LINE L2 -4 3268 2712 635 261 0 13 chrX 48352555 48352712 -128621428 + MIR SINE MIR 100 254 -8 833 198 13 0 chrX 48352864 48353021 -128621119 + L1PB4 LINE L1 5995 6153 -3 686 247 6 6 chrX 48353753 48353911 -128620229 + MER97b DNA MER1_type? 2 159 -894 2048 181 79 24 chrX 48353913 48354322 -128619818 - L1MC/D LINE L1 -604 5755 5295 1135 205 48 26 chrX 48354322 48354551 -128619589 - MER8 DNA MER2_type -3 236 3 2048 181 79 24 chrX 48354551 48354736 -128619404 - L1MC/D LINE L1 -1064 5295 5122 6926 59 11 0 chrX 48354737 48356141 -128617999 - L1PA7 LINE L1 -2 6152 4737 469 135 0 11 chrX 48356142 48356231 -128617909 - L1P LINE L1 -745 5463 5376 1088 91 23 0 chrX 48356235 48356411 -128617729 + (TTC)n Simple_repeat Simple_repeat 1 180 0 366 156 0 0 chrX 48356411 48356475 -128617665 + CT-rich Low_complexity Low_complexity 3 66 0 1730 197 3 16 chrX 48356479 48356794 -128617346 - AluSx SINE Alu -1 311 1 12904 195 31 7 chrX 48356794 48361695 -128612445 - L1PBb LINE L1 -815 5388 367 534 218 57 0 chrX 48361700 48361824 -128612316 - L1PBa LINE L1 -5216 1647 1517 590 293 51 12 chrX 48361887 48362143 -128611997 - L1M4 LINE L1 -2614 3532 3267 27409 125 18 64 chrX 48362151 48367626 -128606514 + L1P LINE L1 12 5233 -913 22351 133 14 126 chrX 48367630 48371730 -128602410 - L1P3 LINE L1 -620 5534 977 1901 70 0 12 chrX 48371730 48371972 -128602168 - AluY SINE Alu 0 311 73 22351 133 14 126 chrX 48371972 48373732 -128600408 - L1P3 LINE L1 -5177 977 434 205 50 25 25 chrX 48373732 48373772 -128600368 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 22351 133 14 126 chrX 48373772 48374154 -128599986 - L1P3 LINE L1 -5720 434 11 297 0 0 0 chrX 48374183 48374216 -128599924 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chrX 48374286 48374309 -128599831 + (TAGA)n Simple_repeat Simple_repeat 3 25 0 1552 246 51 16 chrX 48374402 48375045 -128599095 - L1M4 LINE L1 -2952 3194 2529 429 145 40 40 chrX 48375047 48375171 -128598969 - Tigger3b DNA MER2_type -424 807 684 2415 151 21 14 chrX 48375171 48375602 -128598538 + MER57B LTR ERV1 1 434 0 3292 167 7 15 chrX 48375602 48376202 -128597938 + MER57B-int LTR ERV1 1 595 -6942 * 5931 131 18 5 chrX 48376198 48377241 -128596899 + MER57B-int LTR ERV1 3829 4885 -2652 8486 57 1 0 chrX 48377241 48378398 -128595742 - L1P LINE L1 -2787 3359 2202 7357 34 1 0 chrX 48378412 48380018 -128594122 - L1PA3 LINE L1 -5 6150 4538 * 9186 45 6 1 chrX 48380017 48381920 -128592220 + L1PA4 LINE L1 4238 6142 -13 468 106 0 0 chrX 48381920 48382005 -128592135 + (TA)n Simple_repeat Simple_repeat 1 85 0 13934 105 18 4 chrX 48382005 48384231 -128589909 + MER57B-int LTR ERV1 4887 7147 -390 724 102 23 31 chrX 48384232 48384360 -128589780 + LTR54B LTR ERV1 5 131 -367 1655 56 121 0 chrX 48384360 48384591 -128589549 + MER57B-int LTR ERV1 7279 7537 0 2724 129 19 2 chrX 48384591 48385018 -128589122 + MER57B LTR ERV1 1 434 0 3439 123 81 26 chrX 48385018 48385179 -128588961 - Tigger3b DNA MER2_type -2341 687 536 1915 174 0 6 chrX 48385179 48385490 -128588650 + AluJo SINE Alu 1 309 -3 3439 123 81 26 chrX 48385490 48385979 -128588161 - Tigger3b DNA MER2_type -2492 536 1 219 204 0 0 chrX 48385983 48386032 -128588108 + (TG)n Simple_repeat Simple_repeat 2 50 0 272 315 31 8 chrX 48386269 48386399 -128587741 - L1ME LINE L1 -478 5643 5511 747 303 42 4 chrX 48386520 48386761 -128587379 + MLT1J LTR MaLR 20 269 -242 541 195 40 11 chrX 48386987 48387161 -128586979 - HsTC2 DNA Tc2 -3 1895 1717 658 249 0 73 chrX 48387172 48387405 -128586735 - HsTC2 DNA Tc2 -1590 308 93 805 278 24 27 chrX 48387538 48387833 -128586307 + L1MEc LINE L1 361 654 -6067 386 182 0 64 chrX 48388239 48388349 -128585791 + L1MEc LINE L1 1072 1174 -5547 1306 264 44 4 chrX 48388359 48388817 -128585323 - L1MEc LINE L1 -3291 2924 2449 582 262 96 19 chrX 48388803 48389166 -128584974 - L1MEc LINE L1 -5128 1268 878 * 5747 194 66 2 chrX 48389167 48390577 -128583563 + L1MB1 LINE L1 3120 4619 -1527 2451 230 12 1 chrX 48390621 48391272 -128582868 + L1MB1 LINE L1 4726 5383 -763 22 0 0 0 chrX 48391272 48391294 -128582846 + AT_rich Low_complexity Low_complexity 1 22 0 2789 147 67 0 chrX 48391294 48391804 -128582336 + L1MB1 LINE L1 5621 6164 -4 390 42 0 0 chrX 48391804 48391852 -128582288 + (TTAAA)n Simple_repeat Simple_repeat 3 50 0 322 250 70 41 chrX 48391865 48392037 -128582103 + L1MEc LINE L1 1533 1709 -4831 791 281 33 6 chrX 48392091 48392426 -128581714 + L1MEc LINE L1 1860 2203 -4518 852 203 46 0 chrX 48392437 48392634 -128581506 + L1MEc LINE L1 2257 2462 -4259 364 149 0 40 chrX 48392631 48392705 -128581435 + L1MD3 LINE L1 7732 7802 -193 * 1879 214 99 21 chrX 48392708 48393255 -128580885 + L1M4 LINE L1 4566 5169 -977 1710 179 13 13 chrX 48393255 48393567 -128580573 + AluJo SINE Alu 1 312 0 1879 214 99 21 chrX 48393567 48393642 -128580498 + L1M4 LINE L1 5169 5237 -909 1274 208 14 27 chrX 48393743 48394037 -128580103 + AluJo SINE Alu 23 312 0 3255 227 21 6 chrX 48394048 48395026 -128579114 + L1MB7 LINE L1 5172 6164 -20 189 0 0 0 chrX 48395226 48395247 -128578893 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 243 324 14 0 chrX 48395749 48395823 -128578317 - MIR3 SINE MIR -52 156 82 190 250 0 19 chrX 48396100 48396152 -128577988 - L2 LINE L2 -1 3312 3262 595 263 37 19 chrX 48396187 48396405 -128577735 - MIR SINE MIR 0 262 42 1289 183 25 113 chrX 48396839 48397239 -128576901 - MLT1A1 LTR MaLR 0 365 1 626 264 104 40 chrX 48397574 48397642 -128576498 - L2 LINE L2 -747 2567 2505 958 202 5 5 chrX 48397642 48397830 -128576310 + MER5A DNA MER1_type 1 188 -1 626 264 104 40 chrX 48397830 48398060 -128576080 - L2 LINE L2 -809 2505 2250 519 168 0 0 chrX 48398526 48398621 -128575519 + GA-rich Low_complexity Low_complexity 1 95 0 321 321 95 41 chrX 48398713 48398956 -128575184 - L2 LINE L2 -206 3066 2811 527 251 27 23 chrX 48399037 48399256 -128574884 + MER112 DNA MER1_type 35 254 -6 363 340 99 46 chrX 48399265 48399870 -128574270 - L2 LINE L2 -556 2758 2122 464 200 58 25 chrX 48400689 48400809 -128573331 + MIR SINE MIR 74 197 -65 1630 214 126 30 chrX 48401047 48402940 -128571200 - L1MDa LINE L1 -3691 2849 601 234 0 0 0 chrX 48403040 48403066 -128571074 + (A)n Simple_repeat Simple_repeat 1 26 0 327 253 153 41 chrX 48403151 48403321 -128570819 + MIR SINE MIR 68 256 -6 182 305 34 85 chrX 48405079 48405197 -128568943 - L2 LINE L2 0 3272 3161 2038 111 7 14 chrX 48405571 48405868 -128568272 - AluSx SINE Alu -17 295 1 311 323 30 8 chrX 48406143 48406276 -128567864 + MIR SINE MIR 114 249 -13 185 313 83 42 chrX 48406319 48406415 -128567725 - L3b LINE CR1 -121 1462 1363 376 318 69 26 chrX 48406570 48406759 -128567381 - MIR SINE MIR -18 244 48 22 0 0 0 chrX 48406803 48406825 -128567315 + AT_rich Low_complexity Low_complexity 1 22 0 391 202 128 9 chrX 48407165 48407274 -128566866 - MIR SINE MIR -68 140 19 383 354 8 23 chrX 48408230 48408360 -128565780 - L2 LINE L2 -5 3267 3140 1304 191 0 70 chrX 48408588 48408861 -128565279 - MIR SINE MIR -6 256 3 1537 282 66 28 chrX 48408868 48409680 -128564460 - L2 LINE L2 -89 3224 2384 238 253 202 73 chrX 48409676 48409854 -128564286 - MIR3 SINE MIR -7 201 1 * 189 282 12 71 chrX 48410438 48410523 -128563617 + MIR SINE MIR 162 241 -21 537 272 91 16 chrX 48411163 48411406 -128562734 + MIR SINE MIR 2 262 0 1314 190 7 11 chrX 48412018 48412297 -128561843 - L1PB4 LINE L1 -14 6142 5865 2537 191 22 73 chrX 48412297 48412992 -128561148 - LTR8 LTR ERV1 -2 689 31 3073 132 38 2 chrX 48413050 48413581 -128560559 - L1PB4 LINE L1 -286 5870 5321 253 370 71 8 chrX 48413581 48413708 -128560432 - L2 LINE L2 -51 3221 3087 4736 183 46 46 chrX 48414894 48414985 -128559155 + L1MD1 LINE L1 4549 4638 -1604 2526 65 0 3 chrX 48414985 48415294 -128558846 - AluY SINE Alu -3 308 1 4736 183 46 46 chrX 48415294 48415800 -128558340 + L1MD1 LINE L1 4638 5142 -1100 8103 34 17 0 chrX 48415800 48417563 -128556577 - L1PA4 LINE L1 0 6155 4376 4736 183 46 46 chrX 48417563 48418659 -128555481 + L1MD1 LINE L1 5142 6231 -11 427 224 10 10 chrX 48418668 48418766 -128555374 + MER96B DNA MER1_type? 320 417 0 443 228 18 90 chrX 48419037 48419204 -128554936 + MIR SINE MIR 10 164 -98 658 223 0 0 chrX 48419499 48419629 -128554511 + FLAM_A SINE Alu 4 133 0 2616 169 48 24 chrX 48419669 48420256 -128553884 + L1MB7 LINE L1 5573 6173 -11 694 146 111 18 chrX 48421133 48421304 -128552836 + MER53 DNA DNA 1 187 -2 1341 226 102 6 chrX 48421434 48421766 -128552374 + MLT1A1 LTR MaLR 1 364 -1 519 299 113 0 chrX 48421854 48422048 -128552092 - MIR SINE MIR 0 262 47 879 236 28 4 chrX 48422202 48422456 -128551684 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 48422499 48422521 -128551619 + AT_rich Low_complexity Low_complexity 1 22 0 4673 238 57 31 chrX 48423204 48423434 -128550706 + L1M4 LINE L1 1 224 -6420 1861 151 24 0 chrX 48423434 48423726 -128550414 - AluJb SINE Alu -13 299 1 4673 238 57 31 chrX 48423726 48425681 -128548459 + L1M4 LINE L1 224 2412 -4232 1450 221 0 33 chrX 48425681 48425984 -128548156 - AluJb SINE Alu -19 293 1 4673 238 57 31 chrX 48425984 48426588 -128547552 + L1M4 LINE L1 2412 2999 -3645 1524 228 55 51 chrX 48426597 48427203 -128546937 - L1M4 LINE L1 -3404 2742 2135 11718 153 17 119 chrX 48427213 48430381 -128543759 + L1P LINE L1 12 2855 -3291 8728 141 15 8 chrX 48430566 48432932 -128541208 + L1MA2 LINE L1 1827 4174 -3549 3038 30 0 33 chrX 48432932 48433286 -128540854 + L1PA4 LINE L1 5805 6153 -2 8728 141 15 8 chrX 48433286 48434367 -128539773 + L1MA2 LINE L1 4174 7675 -48 21131 68 3 9 chrX 48434373 48440368 -128533772 + L1PA5 LINE L1 2 6153 -1 768 163 48 27 chrX 48440395 48440542 -128533598 + MER30 DNA MER1_type 80 229 -1 1793 175 0 3 chrX 48440591 48440888 -128533252 - AluJb SINE Alu -16 296 1 1676 161 0 67 chrX 48441003 48441333 -128532807 + AluJo SINE Alu 1 308 -4 1079 282 73 22 chrX 48442268 48442676 -128531464 - MLT1J2 LTR MaLR -7 443 15 2691 174 106 6 chrX 48442781 48443321 -128530819 + L1MB5 LINE L1 5581 6174 0 381 136 0 0 chrX 48443601 48443660 -128530480 + L1MA2 LINE L1 6246 6304 0 10487 40 0 0 chrX 48443979 48445223 -128528917 + L1P LINE L1 3764 5007 -1139 5570 41 17 5 chrX 48445323 48445979 -128528161 + SVA Other Other 721 1384 -2 275 93 111 0 chrX 48445981 48446035 -128528105 - MER53 DNA DNA -84 105 46 17679 103 2 1 chrX 48446042 48446502 -128527638 + L1PA5 LINE L1 2840 3298 -2856 2282 108 0 0 chrX 48446502 48446798 -128527342 + AluY SINE Alu 1 296 -15 17679 103 2 1 chrX 48446798 48449627 -128524513 + L1PA5 LINE L1 3298 6153 -1 468 193 84 0 chrX 48449627 48449710 -128524430 - Tigger3(Golem) DNA MER2_type -2939 90 1 468 232 116 25 chrX 48449712 48449910 -128524230 - HAL1b LINE L1 -421 927 712 545 205 26 26 chrX 48449919 48450036 -128524104 + L2 LINE L2 3186 3302 -11 3044 149 51 35 chrX 48450050 48450620 -128523520 - L1M4c LINE L1 -5448 936 358 6038 159 10 12 chrX 48450620 48452019 -128522121 + L1MA4 LINE L1 4900 6294 -6 2029 164 6 20 chrX 48452044 48452391 -128521749 - L1M4c LINE L1 -6019 365 24 2365 208 13 24 chrX 48452391 48452848 -128521292 + LTR40a LTR ERVL 68 519 0 595 290 70 19 chrX 48454038 48454252 -128519888 - MIR SINE MIR -34 228 4 2320 85 0 7 chrX 48454609 48454904 -128519236 - AluSc SINE Alu 0 309 17 1153 91 19 0 chrX 48455007 48455202 -128518938 + AluSg/x SINE Alu 156 353 0 228 206 151 0 chrX 48455568 48455641 -128518499 - MLT1I LTR MaLR -8 401 318 412 234 38 120 chrX 48455730 48455939 -128518201 - MLT1J LTR MaLR -212 299 108 1994 267 56 30 chrX 48456202 48456775 -128517365 + MLT1E LTR MaLR 1 588 -5 473 272 83 39 chrX 48456897 48457077 -128517063 + L3 LINE CR1 1370 1557 -20 471 228 18 120 chrX 48457306 48457473 -128516667 + MER5A DNA MER1_type 4 153 -36 446 298 122 11 chrX 48457479 48457667 -128516473 + MIR SINE MIR 48 256 -6 213 185 0 37 chrX 48458293 48458347 -128515793 - L2 LINE L2 0 3313 3262 357 274 30 54 chrX 48459005 48459173 -128514967 + MLT1J LTR MaLR 1 164 -347 259 284 23 11 chrX 48459146 48459234 -128514906 + MLT1L LTR MaLR 201 289 -326 * 249 0 0 0 chrX 48460865 48460893 -128513247 - tRNA-Gly-GGG tRNA tRNA -46 28 1 1020 174 47 8 chrX 48460899 48461134 -128513006 + L1PA16 LINE L1 5155 5398 -748 24474 118 61 78 chrX 48461144 48465834 -128508306 + L1PA7 LINE L1 12 4621 -1525 2066 96 0 0 chrX 48465825 48466116 -128508024 - L1P LINE L1 -1253 4893 4603 * 2017 83 0 0 chrX 48466116 48466370 -128507770 - L1P LINE L1 -1847 4299 4046 6706 65 1 4 chrX 48466370 48467173 -128506967 + L1PA7 LINE L1 5347 6149 -5 3957 144 25 25 chrX 48467173 48467467 -128506673 + L1PA16 LINE L1 5393 5686 -480 192 40 0 0 chrX 48467467 48467492 -128506648 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3957 144 25 25 chrX 48467492 48467864 -128506276 + L1PA16 LINE L1 5685 6059 -107 336 176 0 0 chrX 48467867 48467935 -128506205 + L1PA16 LINE L1 6099 6166 0 1215 173 13 9 chrX 48468044 48468269 -128505871 - AluJo SINE Alu -1 311 86 2442 64 3 0 chrX 48469335 48469631 -128504509 + AluY SINE Alu 1 297 -14 237 370 65 48 chrX 48470102 48470515 -128503625 - L2 LINE L2 -458 2856 2437 252 59 0 0 chrX 48471062 48471096 -128503044 + (CTAG)n Simple_repeat Simple_repeat 3 36 0 761 175 0 8 chrX 48471154 48471280 -128502860 - L2 LINE L2 0 3313 3189 2026 126 28 0 chrX 48471443 48471728 -128502412 - AluSg SINE Alu -17 293 1 918 335 102 35 chrX 48471789 48472836 -128501304 - L2 LINE L2 -943 2371 1255 1865 151 26 10 chrX 48473015 48473319 -128500821 - AluJo SINE Alu -3 309 1 1984 195 77 39 chrX 48473558 48474025 -128500115 + MER31A LTR ERV1 1 485 0 278 320 45 81 chrX 48474055 48474355 -128499785 + L2 LINE L2 2776 3062 -210 662 246 118 81 chrX 48474466 48474812 -128499328 + LTR68 LTR ERV1 240 598 -142 232 268 87 22 chrX 48474844 48474982 -128499158 + MER67C LTR ERV1 546 692 -18 441 54 0 0 chrX 48475629 48475685 -128498455 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2076 131 3 0 chrX 48475685 48475983 -128498157 - AluSx SINE Alu -13 299 1 22 0 0 0 chrX 48476068 48476090 -128498050 + AT_rich Low_complexity Low_complexity 1 22 0 706 239 39 85 chrX 48476539 48476713 -128497427 - MIR SINE MIR 0 262 102 2303 100 7 0 chrX 48476713 48477014 -128497126 + AluSx SINE Alu 1 303 -9 706 239 39 85 chrX 48477014 48477099 -128497041 - MIR SINE MIR -160 102 15 246 302 103 17 chrX 48477097 48477213 -128496927 - L2 LINE L2 -582 2732 2607 * 194 308 66 22 chrX 48477246 48477337 -128496803 - L2 LINE L2 -562 2752 2658 307 290 179 60 chrX 48477543 48477929 -128496211 - L1M2 LINE L1 -5891 958 527 27 0 0 0 chrX 48478728 48478755 -128495385 + AT_rich Low_complexity Low_complexity 1 27 0 1493 277 72 11 chrX 48681073 48681785 -128292355 - L1M1 LINE L1 -2597 4968 4214 2282 138 19 21 chrX 48681804 48682180 -128291960 - THE1C LTR MaLR 0 375 1 4605 127 6 1 chrX 48682181 48682853 -128291287 - THE1C-int LTR MaLR -1 1579 905 454 276 8 0 chrX 48682868 48683002 -128291138 - L1PA15-16 LINE L1 -4117 2732 2598 * 5288 146 66 23 chrX 48682992 48683115 -128291025 - L1PA16 LINE L1 0 6166 6050 2026 136 3 13 chrX 48683115 48683417 -128290723 + AluSx SINE Alu 1 299 -13 5288 146 66 23 chrX 48683417 48683986 -128290154 - L1PA16 LINE L1 -116 6050 5507 2589 36 0 0 chrX 48683986 48684288 -128289852 - AluY SINE Alu -9 302 1 5288 146 66 23 chrX 48684288 48684764 -128289376 - L1PA16 LINE L1 -659 5507 4920 7572 28 0 1 chrX 48684765 48686109 -128288031 + L1PA3 LINE L1 4810 6152 -3 1645 236 41 2 chrX 48686115 48686531 -128287609 + L1 LINE L1 4487 4918 -1228 788 163 0 0 chrX 48686558 48686687 -128287453 - THE1-int LTR MaLR -676 904 776 1608 132 4 16 chrX 48686693 48686951 -128287189 - THE1C LTR MaLR -120 255 1 3130 276 47 14 chrX 48686977 48688914 -128285226 - L1PA12 LINE L1 -3394 4190 2182 2128 124 7 0 chrX 48689005 48689341 -128284799 - AluSg SINE Alu 0 338 1 602 379 40 32 chrX 48689696 48690226 -128283914 - L1PA12 LINE L1 -6174 1400 867 6644 257 53 42 chrX 48690303 48693149 -128280991 - L1M1 LINE L1 -3957 3608 17 2096 246 45 95 chrX 48693165 48693928 -128280212 + MER31B-int LTR ERV1 2460 3142 -1794 1735 160 58 25 chrX 48693928 48694290 -128279850 + THE1C LTR MaLR 1 374 -1 2096 246 45 95 chrX 48694290 48694742 -128279398 + MER31B-int LTR ERV1 3142 3615 -1321 571 231 50 63 chrX 48694753 48694974 -128279166 + MER31B-int LTR ERV1 4116 4333 -603 356 262 87 0 chrX 48695053 48695156 -128278984 + MER31B-int LTR ERV1 4359 4470 -466 798 255 45 69 chrX 48695447 48695780 -128278360 + MER31B-int LTR ERV1 4572 4896 -40 438 321 39 33 chrX 48695801 48696149 -128277991 + MER31B LTR ERV1 5 464 -2 1189 278 54 13 chrX 48696150 48696687 -128277453 + L1M4 LINE L1 2250 2808 -3338 3673 266 39 25 chrX 48696734 48698555 -128275585 - L1M1 LINE L1 -4160 3008 1426 * 4300 120 3 14 chrX 48698538 48699205 -128274935 - L1PA13 LINE L1 -71 6092 5433 28 0 0 0 chrX 48699340 48699368 -128274772 + AT_rich Low_complexity Low_complexity 1 28 0 1395 259 36 181 chrX 48699378 48701058 -128273082 - L1M1 LINE L1 -5729 1439 4 1324 271 67 38 chrX 48701071 48701131 -128273009 - L1 LINE L1 -3617 3948 3891 1712 220 78 8 chrX 48701131 48701527 -128272613 + MSTB LTR MaLR 1 424 -2 1324 271 67 38 chrX 48701527 48702615 -128271525 - L1 LINE L1 -3674 3891 2799 1332 231 25 0 chrX 48702615 48702774 -128271366 - AluJb SINE Alu -24 288 118 300 53 0 0 chrX 48702774 48702812 -128271328 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1332 231 25 0 chrX 48702812 48702933 -128271207 - AluJb SINE Alu -194 118 1 1324 271 67 38 chrX 48702933 48703484 -128270656 - L1 LINE L1 -4766 2799 2265 6725 231 26 23 chrX 48703488 48705845 -128268295 - L1MA4 LINE L1 -11 6471 4102 3187 128 0 8 chrX 48705845 48706336 -128267804 + L1PB1 LINE L1 5662 6148 -3 6725 231 26 23 chrX 48706336 48707008 -128267132 - L1MA4 LINE L1 -2380 4102 3434 186 43 0 0 chrX 48707065 48707088 -128267052 + (TG)n Simple_repeat Simple_repeat 2 24 0 1945 187 5 3 chrX 48707652 48708026 -128266114 - L1PA16 LINE L1 -13 6153 5779 3575 243 19 20 chrX 48708026 48708185 -128265955 + L1 LINE L1 4238 4396 -1750 270 0 0 0 chrX 48708185 48708215 -128265925 + (CA)n Simple_repeat Simple_repeat 1 30 0 3575 243 19 20 chrX 48708215 48709169 -128264971 + L1 LINE L1 4396 5350 -796 506 270 43 11 chrX 48709164 48709535 -128264605 - L1MA4 LINE L1 -2888 3440 2982 * 3495 254 67 30 chrX 48709589 48710597 -128263543 - L1MA4 LINE L1 -3864 2464 1495 1953 136 14 10 chrX 48710597 48710891 -128263249 - AluSg SINE Alu -15 295 1 3495 254 67 30 chrX 48710891 48712215 -128261925 - L1MA4 LINE L1 -4833 1495 15 996 320 30 85 chrX 48712211 48712726 -128261414 - L1M3b LINE L1 -5029 1252 775 * 999 78 0 21 chrX 48712726 48712868 -128261272 + L1PA8 LINE L1 6031 6169 -3 996 320 30 85 chrX 48712868 48712961 -128261179 - L1M3b LINE L1 -5506 775 678 328 275 50 33 chrX 48713085 48713267 -128260873 - L1M3b LINE L1 -5518 763 579 * 8886 127 4 3 chrX 48713262 48714684 -128259456 - L1P3 LINE L1 -2633 3828 2405 * 10031 127 20 4 chrX 48714679 48716157 -128257983 - L1P3 LINE L1 -4960 1501 1 210 37 0 0 chrX 48716160 48716187 -128257953 + (TTG)n Simple_repeat Simple_repeat 2 28 0 536 248 99 0 chrX 48716187 48716464 -128257676 - L1MDa LINE L1 -3937 2603 2299 313 274 67 15 chrX 48716495 48716630 -128257510 - L1MDa LINE L1 -4366 2174 2033 9766 130 6 5 chrX 48716702 48718184 -128255956 + L1PA5 LINE L1 11 1493 -4653 23190 58 5 0 chrX 48718184 48721955 -128252185 + L1PA5 LINE L1 2364 6139 -15 243 316 77 0 chrX 48722025 48722142 -128251998 - L1MDa LINE L1 -4295 2245 2120 1484 224 32 3 chrX 48722273 48722648 -128251492 - L1MB2 LINE L1 -7 6164 5779 7973 246 40 18 chrX 48722712 48724004 -128250136 - L1PB4 LINE L1 -5 7570 6308 530 29 0 14 chrX 48724004 48724073 -128250067 + (CTATT)n Simple_repeat Simple_repeat 3 70 0 7973 246 40 18 chrX 48724073 48724797 -128249343 - L1PB4 LINE L1 -1267 6308 5602 1992 157 50 0 chrX 48724797 48725140 -128249000 - THE1B LTR MaLR 0 364 5 9454 131 36 32 chrX 48725144 48726719 -128247421 - THE1B-int LTR MaLR 0 1580 1 2113 163 22 0 chrX 48726719 48727075 -128247065 - THE1B LTR MaLR 0 364 1 7973 246 40 18 chrX 48727075 48728598 -128245542 - L1PB4 LINE L1 -1974 5601 3944 3421 157 211 38 chrX 48728700 48728766 -128245374 - L1PB4 LINE L1 -5733 1832 1779 612 81 0 0 chrX 48728766 48728853 -128245287 + (TC)n Simple_repeat Simple_repeat 2 88 0 3421 157 211 38 chrX 48728853 48729850 -128244290 - L1PB4 LINE L1 -5786 1779 243 2123 107 0 0 chrX 48730514 48730786 -128243354 + AluSp SINE Alu 3 274 -39 291 217 53 86 chrX 48731223 48731308 -128242832 + MLT1K LTR MaLR 442 521 -67 2143 131 0 0 chrX 48731308 48731605 -128242535 + AluSx SINE Alu 1 297 -15 291 217 53 86 chrX 48731605 48731671 -128242469 + MLT1K LTR MaLR 521 588 0 5269 184 16 16 chrX 48731690 48733450 -128240690 - L1PA16 LINE L1 -5 6161 4408 36925 94 8 8 chrX 48733488 48738425 -128235715 - L1PA6 LINE L1 -2 6152 1218 2490 71 0 0 chrX 48738425 48738722 -128235418 + AluY SINE Alu 1 297 -14 36925 94 8 8 chrX 48738722 48739939 -128234201 - L1PA6 LINE L1 -4936 1218 2 6014 234 32 43 chrX 48739943 48741862 -128232278 - L1 LINE L1 -1728 4418 2520 517 125 0 0 chrX 48741895 48741975 -128232165 - AluS SINE Alu -233 80 1 3357 131 2 2 chrX 48741975 48742495 -128231645 + Tigger1 DNA MER2_type 1573 2092 -326 729 249 24 68 chrX 48742496 48742789 -128231351 - LTR4 LTR ERV1 0 596 317 398 238 44 73 chrX 48743001 48743207 -128230933 - LTR4 LTR ERV1 -396 200 1 1613 204 54 3 chrX 48743213 48743526 -128230614 + Tigger1 DNA MER2_type 2084 2412 -6 1879 265 60 49 chrX 48744402 48744677 -128229463 - L1MDb LINE L1 -4818 1588 1317 318 26 0 0 chrX 48744677 48744716 -128229424 + (TG)n Simple_repeat Simple_repeat 2 40 0 1810 130 8 0 chrX 48744717 48744979 -128229161 - AluSq SINE Alu -7 306 43 1879 265 60 49 chrX 48744979 48745002 -128229138 - L1MDb LINE L1 -5089 1317 1296 1562 212 35 0 chrX 48745002 48745285 -128228855 + AluJb SINE Alu 1 293 -19 1879 265 60 49 chrX 48745285 48746398 -128227742 - L1MDb LINE L1 -5110 1296 67 249 301 12 12 chrX 48746402 48746485 -128227655 - L1MDb LINE L1 -6307 102 20 21 0 0 0 chrX 48746584 48746605 -128227535 + AT_rich Low_complexity Low_complexity 1 21 0 1725 195 42 12 chrX 48746617 48746950 -128227190 + MER61A LTR ERV1 1 343 0 2888 161 50 22 chrX 48746952 48747498 -128226642 + MER61A-int LTR ERV1 3 563 -4654 * 18272 116 19 17 chrX 48747483 48750817 -128223323 + MER61A-int LTR ERV1 1396 4819 -398 228 35 0 0 chrX 48750818 48750847 -128223293 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2455 101 3 3 chrX 48750847 48751192 -128222948 + MER61A-int LTR ERV1 4870 5214 -3 443 208 0 0 chrX 48751194 48751271 -128222869 + MER61A LTR ERV1 1 77 -266 2225 114 3 0 chrX 48751385 48751683 -128222457 - AluSp SINE Alu -14 299 1 1816 287 78 17 chrX 48751718 48752473 -128221667 + L1M4 LINE L1 5 805 -5737 566 294 127 6 chrX 48752470 48752831 -128221309 + L1 LINE L1 3297 3701 -2445 * 20139 52 4 3 chrX 48752830 48755423 -128218717 + L1P LINE L1 1336 3932 -2214 455 110 0 0 chrX 48755427 48755500 -128218640 - L1PA5 LINE L1 -95 6059 5987 5027 198 57 78 chrX 48755818 48757710 -128216430 + MER57-int LTR ERV1 1925 5758 -1587 28 29 0 0 chrX 48757897 48757932 -128216208 + AT_rich Low_complexity Low_complexity 1 35 0 4021 262 56 17 chrX 48758594 48759136 -128215004 - L1PBb LINE L1 -3611 3237 2718 1779 139 72 28 chrX 48759136 48759495 -128214645 - THE1C LTR MaLR 0 375 1 4021 262 56 17 chrX 48759495 48760694 -128213446 - L1PBb LINE L1 -4130 2718 1335 368 250 0 0 chrX 48760687 48760767 -128213373 - L1PBb LINE L1 -5293 1555 1476 * 339 348 73 88 chrX 48760767 48761276 -128212864 - L1PBb LINE L1 -5710 1139 639 630 328 103 40 chrX 48761842 48762290 -128211850 - L1PBb LINE L1 -6373 476 1 356 188 62 0 chrX 48762292 48762388 -128211752 - L1MDa LINE L1 -4600 1940 1839 2706 179 21 44 chrX 48762389 48762999 -128211141 + L1MA6 LINE L1 5334 5929 -371 1440 121 53 0 chrX 48763000 48763206 -128210934 - AluSg/x SINE Alu -18 294 78 1360 195 29 55 chrX 48763206 48763346 -128210794 + L1MA6 LINE L1 5921 6063 -237 2233 77 0 18 chrX 48763346 48763659 -128210481 + AluY SINE Alu 1 308 0 1360 195 29 55 chrX 48763659 48763902 -128210238 + L1MA6 LINE L1 6063 6295 -5 281 145 16 0 chrX 48764011 48764073 -128210067 + (TA)n Simple_repeat Simple_repeat 1 63 0 3357 200 23 8 chrX 48764088 48764797 -128209343 - L1PB4 LINE L1 -10 6146 5428 3910 199 30 8 chrX 48764811 48765811 -128208329 - L1PB4 LINE L1 -14 6199 5189 1884 136 0 0 chrX 48765814 48766101 -128208039 - L1PA14 LINE L1 -10 6151 5865 6037 230 25 21 chrX 48766101 48767846 -128206294 - L1PB4 LINE L1 -1024 5179 3428 2435 142 30 47 chrX 48767848 48768321 -128205819 - MER4C LTR ERV1 0 465 1 3005 96 10 0 chrX 48768324 48768739 -128205401 + THE1A-int LTR MaLR 1162 1580 0 2075 132 47 9 chrX 48768739 48769081 -128205059 + THE1A LTR MaLR 1 355 0 1891 328 57 56 chrX 48769349 48771760 -128202380 - PRIMA41-int LTR ERV1 -2765 4991 2579 765 286 48 27 chrX 48772052 48772418 -128201722 - PRIMA41-int LTR ERV1 -4029 2647 1560 345 24 0 0 chrX 48774300 48774342 -128199798 + (TTG)n Simple_repeat Simple_repeat 2 43 0 1676 266 33 23 chrX 48775196 48775677 -128198463 - MER41E LTR ERV1 -6 506 21 3324 251 41 44 chrX 48775784 48777799 -128196341 - L1PB4 LINE L1 -2828 3375 1354 * 6787 33 1 0 chrX 48777796 48778613 -128195527 + L1P LINE L1 3980 4797 -1349 637 281 39 34 chrX 48778606 48779175 -128194965 - L1PB4 LINE L1 -4849 1354 694 * 319 247 0 0 chrX 48779171 48779252 -128194888 - L1PA15-16 LINE L1 -5292 1557 1477 * 7734 250 44 42 chrX 48780487 48781033 -128193107 - L1P5 LINE L1 -720 6152 5609 570 100 0 0 chrX 48781033 48781113 -128193027 + L1PA7 LINE L1 6068 6147 -7 2439 150 16 0 chrX 48781122 48781549 -128192591 + L1PA16 LINE L1 5726 6159 -7 7734 250 44 42 chrX 48781549 48785787 -128188353 - L1P5 LINE L1 -1270 5602 1272 272 363 0 6 chrX 48785833 48785990 -128188150 - L1P5 LINE L1 -5707 1156 1001 1027 319 173 39 chrX 48786514 48787351 -128186789 - L1M2 LINE L1 -5893 956 8 907 236 50 13 chrX 48787750 48788177 -128185963 - LTR29 LTR ERV1 0 644 160 250 250 10 42 chrX 48788209 48788305 -128185835 - MER34 LTR ERV1 -449 93 1 3916 185 32 32 chrX 48788328 48788353 -128185787 - MER34-int LTR ERV1 -20 6311 6287 2225 108 0 19 chrX 48788353 48788669 -128185471 + AluSg SINE Alu 1 310 0 3916 185 32 32 chrX 48788669 48789588 -128184552 - MER34-int LTR ERV1 -43 6288 5367 14232 45 2 0 chrX 48789589 48792136 -128182004 + L1PA4 LINE L1 3603 6152 -3 6341 44 0 0 chrX 48792150 48792919 -128181221 + L1PA5 LINE L1 5386 6154 0 2278 193 15 6 chrX 48792954 48793432 -128180708 - MER34-int LTR ERV1 -962 5369 4888 897 162 12 1 chrX 48793440 48793602 -128180538 - L1PA15 LINE L1 -23 6142 5975 1939 204 52 4 chrX 48793602 48794101 -128180039 - MER34-int LTR ERV1 -1460 4871 4349 350 132 0 0 chrX 48794102 48794155 -128179985 - THE1A LTR MaLR 0 355 303 11257 119 9 30 chrX 48794155 48796155 -128177985 + L1PA7 LINE L1 15 1993 -4468 16260 88 16 8 chrX 48796155 48799327 -128174813 + L1PA7 LINE L1 3310 6454 -15 288 0 0 0 chrX 48799332 48799364 -128174776 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 872 50 0 17 chrX 48799810 48799929 -128174211 + (GAAA)n Simple_repeat Simple_repeat 3 119 0 2324 84 6 0 chrX 48799929 48800250 -128173890 - THE1A LTR MaLR -31 324 2 10949 115 9 9 chrX 48800251 48801830 -128172310 - THE1A-int LTR MaLR 0 1580 2 2655 101 0 0 chrX 48801831 48802186 -128171954 - THE1A LTR MaLR 0 355 1 1670 186 56 69 chrX 48802186 48802827 -128171313 - MER34-int LTR ERV1 -1979 4352 3720 1002 243 42 11 chrX 48803052 48803455 -128170685 + LTR2 LTR ERV1 3 449 0 37 76 0 0 chrX 48803465 48803544 -128170596 + AT_rich Low_complexity Low_complexity 1 79 0 3263 183 32 68 chrX 48803552 48804469 -128169671 - MER34-int LTR ERV1 -2794 3537 2654 3664 212 40 66 chrX 48804492 48804716 -128169424 - LTR49-int LTR ERV1 -3707 2624 2396 481 259 15 37 chrX 48804716 48804851 -128169289 + FLAM_A SINE Alu 1 132 -1 3664 212 40 66 chrX 48804851 48805532 -128168608 - LTR49-int LTR ERV1 -3935 2396 1699 2001 143 11 0 chrX 48805532 48805819 -128168321 - AluSx SINE Alu -21 291 2 3664 212 40 66 chrX 48805819 48805961 -128168179 - LTR49-int LTR ERV1 -4632 1699 1555 576 0 0 0 chrX 48805961 48806025 -128168115 + (CA)n Simple_repeat Simple_repeat 1 64 0 3664 212 40 66 chrX 48806025 48806191 -128167949 - LTR49-int LTR ERV1 -4776 1555 777 3613 184 18 27 chrX 48806191 48806920 -128167220 + MER50 LTR ERV1 1 722 -12 7326 176 50 38 chrX 48806920 48808417 -128165723 + MER50-int LTR ERV1 7 1521 -5684 409 228 37 81 chrX 48808465 48808601 -128165539 + MER50-int LTR ERV1 1505 1634 -5571 959 200 88 8 chrX 48808727 48808967 -128165173 + MER50-int LTR ERV1 1630 1888 -5317 1783 152 110 0 chrX 48808976 48809304 -128164836 + THE1B LTR MaLR 1 364 0 9269 140 56 3 chrX 48809304 48810804 -128163336 + THE1B-int LTR MaLR 1 1580 0 854 86 0 0 chrX 48810808 48810924 -128163216 + THE1B LTR MaLR 249 364 0 5870 236 40 34 chrX 48810929 48812508 -128161632 + MER50-int LTR ERV1 1904 3370 -3835 21 0 0 0 chrX 48812549 48812570 -128161570 + AT_rich Low_complexity Low_complexity 1 21 0 618 323 36 29 chrX 48812764 48813210 -128160930 + MER50-int LTR ERV1 2885 3333 -1621 554 318 48 37 chrX 48813897 48814447 -128159693 + MER50-int LTR ERV1 3761 5282 -1809 210 71 0 0 chrX 48814558 48814586 -128159554 + (A)n Simple_repeat Simple_repeat 1 28 0 562 338 30 24 chrX 48814838 48815335 -128158805 + MER50-int LTR ERV1 5387 5886 -1870 5654 184 2 22 chrX 48816541 48817647 -128156493 + MER50-int LTR ERV1 3895 7131 -74 822 187 11 33 chrX 48817670 48817852 -128156288 - LTR9 LTR ERV1 -434 178 1 26 0 0 0 chrX 48818176 48818202 -128155938 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrX 48818257 48818281 -128155859 + AT_rich Low_complexity Low_complexity 1 24 0 287 222 0 37 chrX 48818378 48818459 -128155681 + L1MC4a LINE L1 6229 6306 -1502 18834 64 2 4 chrX 48818474 48821016 -128153124 + L1P LINE L1 9 2545 -3601 33642 50 2 3 chrX 48821062 48826351 -128147789 - L1PA4 LINE L1 0 6155 876 3784 197 37 22 chrX 48826374 48827804 -128146336 + L1MA4 LINE L1 4235 5683 -617 729 238 21 0 chrX 48827808 48827951 -128146189 + AluJb SINE Alu 140 285 -27 2250 213 60 7 chrX 48827956 48828056 -128146084 + L1MA4 LINE L1 5677 5770 -530 345 100 0 0 chrX 48828056 48828106 -128146034 + (TA)n Simple_repeat Simple_repeat 2 51 0 2250 213 60 7 chrX 48828106 48828586 -128145554 + L1MA4 LINE L1 5770 6288 -12 630 294 59 7 chrX 48828601 48828723 -128145417 + L1 LINE L1 4763 4877 -1269 2756 181 25 61 chrX 48828723 48829358 -128144782 - LTR9 LTR ERV1 0 612 1 630 294 59 7 chrX 48829358 48829541 -128144599 + L1 LINE L1 4877 5084 -1062 1945 106 14 7 chrX 48829544 48829819 -128144321 - AluSq SINE Alu -22 291 15 271 91 0 0 chrX 48829820 48829864 -128144276 + AluSp/q SINE Alu 259 302 -1 1767 159 24 0 chrX 48829871 48829995 -128144145 + AluSx SINE Alu 2 122 -190 261 0 0 0 chrX 48829995 48830024 -128144116 + (CA)n Simple_repeat Simple_repeat 2 30 0 1767 159 24 0 chrX 48830024 48830195 -128143945 + AluSx SINE Alu 122 304 -8 6549 263 37 3 chrX 48830235 48831724 -128142416 + L1PA13 LINE L1 1 1539 -5248 37968 87 8 8 chrX 48831735 48837874 -128136266 + L1PA5 LINE L1 11 6150 -4 17701 193 24 12 chrX 48837880 48843090 -128131050 + L1PA13 LINE L1 1524 6806 -8 229 418 0 20 chrX 48843709 48843855 -128130285 + L1PB4 LINE L1 787 929 -5921 301 278 22 0 chrX 48844265 48844355 -128129785 + L1PB4 LINE L1 1481 1572 -5277 * 9733 239 52 19 chrX 48844333 48847134 -128127006 + L1PB4 LINE L1 1423 4131 -2728 279 0 0 0 chrX 48847134 48847165 -128126975 + (CA)n Simple_repeat Simple_repeat 2 32 0 9733 239 52 19 chrX 48847165 48847573 -128126567 + L1PB4 LINE L1 4131 4524 -2335 1655 190 7 3 chrX 48847573 48847868 -128126272 - AluSx SINE Alu -16 296 1 9733 239 52 19 chrX 48847868 48849837 -128124303 + L1PB4 LINE L1 4524 6847 -12 249 88 94 35 chrX 48849837 48850007 -128124133 + (TA)n Simple_repeat Simple_repeat 1 180 0 30 0 0 0 chrX 48850094 48850124 -128124016 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chrX 48850124 48850155 -128123985 + (CA)n Simple_repeat Simple_repeat 2 32 0 11287 231 36 28 chrX 48850155 48853418 -128120722 + L1M2 LINE L1 65 3302 -3546 1518 200 0 56 chrX 48853418 48853723 -128120417 + AluJo SINE Alu 3 290 -22 11287 231 36 28 chrX 48853723 48854214 -128119926 + L1M2 LINE L1 3302 3788 -3060 2087 144 3 0 chrX 48854214 48854519 -128119621 + AluSx SINE Alu 1 306 -6 11287 231 36 28 chrX 48854519 48856107 -128118033 + L1M2 LINE L1 3788 5451 -1397 2911 274 40 12 chrX 48856115 48856934 -128117206 + L1M1 LINE L1 16 857 -6708 1338 242 31 14 chrX 48856958 48857442 -128116698 - L1 LINE L1 -2586 3384 2893 614 339 73 15 chrX 48857644 48857974 -128116166 - L1 LINE L1 -5541 350 2 26 50 0 0 chrX 48858032 48858072 -128116068 + AT_rich Low_complexity Low_complexity 1 40 0 183 286 29 14 chrX 48858999 48859069 -128115071 + MIR SINE MIR 134 204 -58 367 98 0 0 chrX 48859196 48859247 -128114893 + LTR55 LTR ERV 10 60 -488 3562 95 10 18 chrX 48859281 48859953 -128114187 - L1PA8A LINE L1 -3 6128 5276 424 218 23 0 chrX 48859953 48860040 -128114100 + LTR55 LTR ERV 47 135 -413 * 782 262 50 25 chrX 48860035 48860314 -128113826 + LTR55 LTR ERV 248 533 -15 2874 10 0 0 chrX 48861112 48861423 -128112717 + AluY SINE Alu 1 311 0 3329 128 16 82 chrX 48861821 48862464 -128111676 - MER4A LTR ERV1 0 600 1 2896 136 25 41 chrX 48862471 48863028 -128111112 - MER4A-int LTR ERV1 -7 6591 6044 609 163 0 0 chrX 48863028 48863126 -128111014 + MER4A LTR ERV1 1 98 -566 1690 127 182 20 chrX 48863126 48863472 -128110668 + MER4A LTR ERV1 263 664 0 3970 146 117 68 chrX 48863475 48864467 -128109673 + MER4A-int LTR ERV1 1 1040 -5558 3765 147 9 9 chrX 48864467 48865102 -128109038 + MER41B LTR ERV1 1 635 0 4226 157 12 9 chrX 48865102 48865790 -128108350 + MER41-int LTR ERV1 1 690 -5256 1832 149 51 64 chrX 48865791 48866166 -128107974 + MER41-int LTR ERV1 1392 1761 -4185 702 151 0 17 chrX 48866168 48866287 -128107853 + MER41-int LTR ERV1 1901 2017 -3929 * 5795 150 39 39 chrX 48866283 48867422 -128106718 + MER41-int LTR ERV1 2781 3919 -3618 11487 114 12 19 chrX 48867437 48869212 -128104928 + MER41-int LTR ERV1 4164 5926 -20 1679 86 39 0 chrX 48869208 48869440 -128104700 + MER41B-int LTR ERV1 5686 5926 -20 * 1855 83 36 0 chrX 48869436 48869688 -128104452 + MER41B-int LTR ERV1 5686 5946 0 3899 137 13 5 chrX 48869688 48870318 -128103822 + MER41B LTR ERV1 1 635 0 3846 163 62 20 chrX 48870318 48871176 -128102964 + MER41-int LTR ERV1 1037 1930 -4668 8447 241 41 18 chrX 48871176 48871661 -128102479 + L1M3e LINE L1 167 640 -6466 828 30 0 0 chrX 48871661 48871760 -128102380 + (GA)n Simple_repeat Simple_repeat 2 100 0 8447 241 41 18 chrX 48871760 48874109 -128100031 + L1M3e LINE L1 640 3729 -3377 470 361 4 18 chrX 48874114 48874341 -128099799 + L1PA16 LINE L1 788 1011 -6563 687 298 74 7 chrX 48874502 48874811 -128099329 + L1PA16 LINE L1 2183 2512 -5069 * 8551 34 0 1 chrX 48874809 48876640 -128097500 + L1PA4 LINE L1 4324 6152 -3 10019 239 70 29 chrX 48876651 48878685 -128095455 + L1PA16 LINE L1 2554 4502 -3102 13310 34 8 6 chrX 48878685 48880975 -128093165 + L1PA4 LINE L1 3868 6155 0 10019 239 70 29 chrX 48880975 48882895 -128091245 + L1PA16 LINE L1 4502 6805 -799 4093 29 0 0 chrX 48882895 48883342 -128090798 + L1PA5 LINE L1 5704 6150 -4 10019 239 70 29 chrX 48883342 48884176 -128089964 + L1PA16 LINE L1 6805 7603 -1 1340 275 28 71 chrX 48884175 48884481 -128089659 - L1 LINE L1 -3156 2990 2723 * 6592 90 22 4 chrX 48884481 48886338 -128087802 + L1PA11 LINE L1 4302 6172 -2 1340 275 28 71 chrX 48886338 48886649 -128087491 - L1 LINE L1 -3423 2723 2400 * 4261 220 16 1 chrX 48886641 48887828 -128086312 + L1MB1 LINE L1 4964 6168 0 3210 263 78 55 chrX 48887836 48888066 -128086074 + L1MC4 LINE L1 6367 6590 -1452 605 39 58 0 chrX 48888066 48888169 -128085971 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 3210 263 78 55 chrX 48888169 48889278 -128084862 + L1MC4 LINE L1 6590 7741 -301 902 249 53 0 chrX 48889278 48889487 -128084653 - MER58A DNA MER1_type -3 221 2 3210 263 78 55 chrX 48889487 48889537 -128084603 + L1MC4 LINE L1 7741 7788 -254 2007 231 79 25 chrX 48889667 48890187 -128083953 - MER74A LTR ERVL 0 558 11 1200 111 0 0 chrX 48890197 48890377 -128083763 + (TA)n Simple_repeat Simple_repeat 1 180 0 243 188 0 0 chrX 48890382 48890446 -128083694 - L1MC4 LINE L1 -1339 6703 6640 534 255 72 19 chrX 48890470 48890678 -128083462 - HERVL74 LTR ERVL -42 5643 5425 7236 261 29 43 chrX 48890690 48892680 -128081460 + L1M2 LINE L1 324 2340 -4828 2389 56 3 0 chrX 48892680 48892966 -128081174 + AluSp SINE Alu 1 287 -26 294 95 0 0 chrX 48892966 48893008 -128081132 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 7236 261 29 43 chrX 48893008 48893396 -128080744 + L1M2 LINE L1 2338 2670 -4498 330 96 0 0 chrX 48893418 48893470 -128080670 + L1M2 LINE L1 1958 2009 -5159 * 2900 214 24 41 chrX 48893456 48894532 -128079608 + L1M2 LINE L1 2657 3705 -3462 2176 113 13 3 chrX 48894532 48894841 -128079299 - AluSq SINE Alu -1 312 1 2900 214 24 41 chrX 48894841 48895082 -128079058 + L1M2 LINE L1 3705 3949 -3218 1217 298 68 72 chrX 48895115 48895836 -128078304 + L1 LINE L1 21 738 -6471 609 299 52 64 chrX 48896359 48897011 -128077129 + L1 LINE L1 1086 1947 -5262 228 35 0 0 chrX 48897011 48897040 -128077100 + (CAA)n Simple_repeat Simple_repeat 2 30 0 609 299 52 64 chrX 48897040 48897122 -128077018 + L1 LINE L1 1947 2028 -5181 309 283 11 11 chrX 48898377 48898469 -128075671 + L1PA15-16 LINE L1 1473 1564 -5285 * 5265 228 24 20 chrX 48898466 48900993 -128073147 + L1PA16 LINE L1 1348 3865 -3004 189 0 0 0 chrX 48900993 48901014 -128073126 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 5265 228 24 20 chrX 48901014 48902470 -128071670 + L1PA16 LINE L1 3865 6861 -8 * 5591 229 33 28 chrX 48902465 48902826 -128071314 + L1 LINE L1 4090 4448 -2760 5854 99 11 31 chrX 48902826 48903634 -128070506 - LTR25 LTR ERV1 -2 792 1 5591 229 33 28 chrX 48903634 48904799 -128069341 + L1 LINE L1 4448 5624 -1584 4251 265 26 44 chrX 48904812 48906604 -128067536 + L1PBa LINE L1 3 1644 -5219 2235 181 3 13 chrX 48906612 48907004 -128067136 + L1PBb LINE L1 255 642 -5562 3117 108 2 22 chrX 48907004 48907457 -128066683 + L1PB1 LINE L1 5708 6151 0 4520 163 92 65 chrX 48907457 48909100 -128065040 - MER4-int LTR ERV1 -4114 2484 1266 4445 137 5 5 chrX 48909100 48909735 -128064405 + MER41B LTR ERV1 1 635 0 4124 145 9 8 chrX 48909735 48910364 -128063776 + MER41B-int LTR ERV1 1 630 -5316 4026 142 64 30 chrX 48910340 48911202 -128062938 + MER41B-int LTR ERV1 1224 2017 -3929 * 4985 135 60 27 chrX 48911194 48912447 -128061693 + MER41B-int LTR ERV1 2777 3749 -2197 2055 49 0 0 chrX 48912452 48912698 -128061442 + L1PA5 LINE L1 3972 4217 -1929 8200 36 0 1 chrX 48912699 48914402 -128059738 + L1PA5 LINE L1 4453 6153 -1 490 147 49 0 chrX 48914402 48914504 -128059636 + Charlie5 DNA MER1_type 2416 2522 -90 5679 115 105 120 chrX 48914598 48916183 -128057957 + pTR5 LTR ERV1 743 2438 0 883 118 0 15 chrX 48916856 48916992 -128057148 + MER4A LTR ERV1 1 134 -530 772 227 9 19 chrX 48916994 48917210 -128056930 - L1M4 LINE L1 -774 5372 5159 267 188 101 29 chrX 48917205 48917274 -128056866 - L1MC5 LINE L1 -585 7376 7303 * 21 36 0 0 chrX 48917344 48917372 -128056768 + GC_rich Low_complexity Low_complexity 1 28 0 2741 78 38 90 chrX 48917423 48917923 -128056217 + SVA Other Other 393 866 -520 6461 66 4 54 chrX 48917951 48919392 -128054748 + SVA Other Other 433 1383 -3 2141 149 13 84 chrX 48919392 48919926 -128054214 + MER4A LTR ERV1 100 664 0 2363 181 103 42 chrX 48919940 48920926 -128053214 + MER4A-int LTR ERV1 13 1180 -4483 240 35 0 0 chrX 48920926 48920955 -128053185 + (TG)n Simple_repeat Simple_repeat 2 30 0 2363 181 103 42 chrX 48920955 48921130 -128053010 + MER4A-int LTR ERV1 1180 1343 -4320 3653 136 12 94 chrX 48921133 48921823 -128052317 - MER41B LTR ERV1 0 635 3 2902 169 4 0 chrX 48921825 48922304 -128051836 - MER41B-int LTR ERV1 0 5946 5466 393 135 95 0 chrX 48922319 48922393 -128051747 + L1MA8 LINE L1 6055 6135 -156 8200 36 0 1 chrX 48922393 48924091 -128050049 - L1PA5 LINE L1 -5 6149 4453 2055 49 0 0 chrX 48924092 48924338 -128049802 - L1PA5 LINE L1 -1929 4217 3972 1958 123 113 7 chrX 48924343 48924750 -128049390 - MER41B-int LTR ERV1 -2197 3749 3300 * 4583 136 35 31 chrX 48924738 48925596 -128048544 - MER41B-int LTR ERV1 -3900 3637 2777 3721 139 34 4 chrX 48925588 48926441 -128047699 - MER41B-int LTR ERV1 -3929 2017 1077 * 3859 143 9 8 chrX 48926426 48927055 -128047085 - MER41B-int LTR ERV1 -5316 630 1 4129 123 11 11 chrX 48927055 48927690 -128046450 - MER41B LTR ERV1 0 635 1 3985 163 43 66 chrX 48927690 48929334 -128044806 + MER4-int LTR ERV1 1344 2482 -4116 2890 110 2 22 chrX 48929334 48929787 -128044353 - L1PB1 LINE L1 0 6151 5708 2087 181 3 13 chrX 48929787 48930179 -128043961 - L1PBb LINE L1 -5562 1301 914 3690 270 23 40 chrX 48930187 48931979 -128042161 - L1PBa LINE L1 -5219 1644 3 4947 229 33 28 chrX 48931992 48933157 -128040983 - L1 LINE L1 -1584 4562 3386 5473 93 11 31 chrX 48933157 48933965 -128040175 + LTR25 LTR ERV1 1 792 -2 4947 229 33 28 chrX 48933965 48934326 -128039814 - L1 LINE L1 -2760 3386 3028 4807 207 13 9 chrX 48934321 48935777 -128038363 - L1PA16 LINE L1 -8 6860 5397 * 189 0 0 0 chrX 48935777 48935798 -128038342 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 4807 207 13 9 chrX 48935798 48936118 -128038022 - L1PA16 LINE L1 -1471 5397 5080 4235 252 31 26 chrX 48936112 48938323 -128035817 - L1PA16 LINE L1 -3183 3665 1347 * 277 315 0 0 chrX 48938320 48938412 -128035728 - L1PA16 LINE L1 -5285 1563 1472 * 487 302 51 62 chrX 48939669 48939743 -128034397 - L1PA16 LINE L1 -5189 1660 1587 228 35 0 0 chrX 48939743 48939772 -128034368 + (TTG)n Simple_repeat Simple_repeat 2 30 0 487 302 51 62 chrX 48939772 48940424 -128033716 - L1PA16 LINE L1 -5262 1587 726 1005 298 68 72 chrX 48940947 48941668 -128032472 - L1M2b LINE L1 -6471 738 21 2561 213 24 41 chrX 48941712 48941942 -128032198 - L1 LINE L1 -3229 3938 3705 2177 113 13 3 chrX 48941942 48942251 -128031889 + AluSq SINE Alu 1 312 -1 2561 213 24 41 chrX 48942251 48943327 -128030813 - L1 LINE L1 -3462 3705 2657 306 96 0 0 chrX 48943313 48943365 -128030775 - L1 LINE L1 -5159 2009 1958 * 6484 261 29 43 chrX 48943387 48943775 -128030365 - L1M2 LINE L1 -4498 2351 1959 294 95 0 0 chrX 48943775 48943817 -128030323 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 2287 54 3 27 chrX 48943817 48944111 -128030029 - AluSp SINE Alu -26 287 1 6484 261 29 43 chrX 48944111 48946104 -128028036 - L1M2 LINE L1 -4888 1961 2 1430 270 26 36 chrX 48946258 48946680 -128027460 - L1M1 LINE L1 -5833 1732 644 3736 164 60 19 chrX 48946693 48947576 -128026564 - MER41B-int LTR ERV1 -4643 1955 1037 3884 130 19 11 chrX 48947576 48948206 -128025934 - MER41B LTR ERV1 0 635 1 1764 83 36 0 chrX 48948206 48948458 -128025682 - MER41B-int LTR ERV1 0 5946 5686 1597 86 39 0 chrX 48948454 48948686 -128025454 - MER41B-int LTR ERV1 -20 5926 5686 * 10896 114 12 20 chrX 48948682 48950458 -128023682 - MER41B-int LTR ERV1 -20 5926 4164 5418 150 44 39 chrX 48950458 48951612 -128022528 - MER41B-int LTR ERV1 -2823 3919 2644 663 151 0 17 chrX 48951608 48951727 -128022413 - MER41B-int LTR ERV1 -3929 2017 1901 * 1707 152 51 64 chrX 48951729 48952104 -128022036 - MER41B-int LTR ERV1 -4185 1761 1392 3970 157 12 9 chrX 48952105 48952793 -128021347 - MER41B-int LTR ERV1 -5256 690 1 3759 132 20 20 chrX 48952793 48953428 -128020712 - MER41B LTR ERV1 0 635 1 3663 146 117 68 chrX 48953428 48954420 -128019720 - MER4A-int LTR ERV1 -5558 1040 1 1567 127 182 20 chrX 48954423 48954769 -128019371 - MER4A LTR ERV1 0 664 263 576 163 0 0 chrX 48954769 48954867 -128019273 - MER4A LTR ERV1 -566 98 1 2745 135 25 41 chrX 48954867 48955424 -128018716 + MER4A-int LTR ERV1 6044 6591 -7 3316 128 16 82 chrX 48955431 48956074 -128018066 + MER4A LTR ERV1 1 600 0 2849 13 0 0 chrX 48956455 48956766 -128017374 - AluY SINE Alu 0 311 1 710 254 52 29 chrX 48957564 48957836 -128016304 - LTR55 LTR ERV -15 533 256 396 218 23 0 chrX 48957839 48957926 -128016214 - LTR55 LTR ERV -413 135 47 3823 87 9 13 chrX 48957926 48958598 -128015542 + L1PA8A LINE L1 5276 6128 -3 349 98 0 0 chrX 48958632 48958683 -128015457 - LTR55 LTR ERV -488 60 10 26 50 0 0 chrX 48959807 48959847 -128014293 + AT_rich Low_complexity Low_complexity 1 40 0 302 303 20 13 chrX 48959905 48960057 -128014083 + L1MB2 LINE L1 2 154 -5737 21 36 0 0 chrX 48960058 48960086 -128014054 + AT_rich Low_complexity Low_complexity 1 28 0 763 36 85 0 chrX 48960099 48960264 -128013876 + (TA)n Simple_repeat Simple_repeat 1 179 0 332 373 28 10 chrX 48960268 48960451 -128013689 + L1MB2 LINE L1 204 632 -5259 5271 231 62 16 chrX 48960648 48963546 -128010594 + L1MB2 LINE L1 2889 5920 -75 569 199 23 0 chrX 48964671 48964802 -128009338 + L1MB7 LINE L1 6042 6175 -9 4152 129 69 15 chrX 48965399 48965731 -128008409 - MER4E LTR ERV1 0 779 466 10847 76 15 0 chrX 48965731 48967969 -128006171 + L1PA7 LINE L1 3902 6153 -1 4152 129 69 15 chrX 48967969 48968384 -128005756 - MER4E LTR ERV1 -313 466 1 5313 123 63 24 chrX 48969215 48970197 -128003943 - MER4E-int LTR ERV1 -113 6645 5626 2539 132 111 8 chrX 48970204 48970967 -128003173 - MER4E-int LTR ERV1 -1375 5383 4452 1064 204 70 4 chrX 48970966 48971196 -128002944 - MER4E-int LTR ERV1 -2670 4088 3844 * 36048 51 1 0 chrX 48971196 48977049 -127997091 - L1PA4 LINE L1 0 6155 297 586 61 0 12 chrX 48977049 48977131 -127997009 - L1PA4 LINE L1 -6063 83 3 7177 132 78 27 chrX 48977131 48978670 -127995470 - MER4E-int LTR ERV1 -2905 3853 1782 7027 54 11 0 chrX 48978670 48980192 -127993948 + L1PA5 LINE L1 4582 6150 -4 7177 132 78 27 chrX 48980192 48981081 -127993059 - MER4E-int LTR ERV1 -4976 1782 940 1651 133 50 81 chrX 48981093 48981245 -127992895 - MER4B-int LTR ERV1 -5569 1189 1034 2386 103 0 0 chrX 48981245 48981557 -127992583 + AluSp SINE Alu 1 312 -1 1651 133 50 81 chrX 48981557 48982001 -127992139 - MER4B-int LTR ERV1 -5724 1034 555 1473 61 0 0 chrX 48982017 48982213 -127991927 - MER4E LTR ERV1 -27 739 544 751 254 71 17 chrX 48982230 48982688 -127991452 + L1M4 LINE L1 2468 2961 -3185 1388 179 54 88 chrX 48982688 48983152 -127990988 + MER83 LTR ERV1 1 448 0 4747 273 55 52 chrX 48983152 48987300 -127986840 + MER83-int LTR ERV1 12 4629 -1083 2127 143 7 0 chrX 48987494 48987802 -127986338 + AluSx SINE Alu 1 310 -2 642 300 48 51 chrX 48987881 48989164 -127984976 + MER83-int LTR ERV1 4363 6556 -1885 2293 96 0 10 chrX 48989578 48989880 -127984260 - AluSx SINE Alu -6 306 8 1772 191 13 8 chrX 48990119 48990501 -127983639 + MER83-int LTR ERV1 1932 2315 -1970 402 311 0 0 chrX 48991748 48991911 -127982229 + MER83-int LTR ERV1 6542 8177 -449 1922 166 0 0 chrX 48992098 48992417 -127981723 + MER83-int LTR ERV1 3956 4274 -11 1238 193 39 87 chrX 48992418 48992880 -127981260 + MER83 LTR ERV1 1 440 -8 788 314 32 49 chrX 48992949 48993544 -127980596 + L1PA16 LINE L1 9 593 -6988 878 325 37 39 chrX 48993565 48994355 -127979785 + L1PA16 LINE L1 1545 2181 -5400 2407 136 15 2 chrX 48994645 48995050 -127979090 - MER41B LTR ERV1 0 635 226 2405 279 40 12 chrX 48995053 48996109 -127978031 + L1PA16 LINE L1 3416 4500 -3084 16558 45 3 0 chrX 48996125 48998934 -127975206 - L1PA4 LINE L1 -4 6151 3337 23991 67 4 0 chrX 48998936 49002194 -127971946 - L1PA4 LINE L1 -2871 3275 7 6154 226 34 31 chrX 49002219 49004186 -127969954 + L1PA16 LINE L1 4542 6501 -1103 5386 106 81 0 chrX 49004186 49005570 -127968570 + L1PA11 LINE L1 4697 6172 -2 6154 226 34 31 chrX 49005570 49005617 -127968523 + L1PA16 LINE L1 6501 6546 -1058 365 110 14 27 chrX 49005617 49005690 -127968450 + L1PA16 LINE L1 6092 6163 -3 6154 226 34 31 chrX 49005690 49006730 -127967410 + L1PA16 LINE L1 6546 7595 -9 911 284 38 72 chrX 49006771 49007776 -127966364 + L1M4 LINE L1 3074 4044 -2102 390 21 0 0 chrX 49008024 49008071 -127966069 + (TG)n Simple_repeat Simple_repeat 2 48 0 860 191 94 58 chrX 49010008 49010310 -127963830 - MSTC LTR MaLR 0 428 74 4013 258 64 34 chrX 49010378 49011714 -127962426 - MSTC-int LTR MaLR 0 1735 360 3711 180 36 4 chrX 49011695 49012658 -127961482 + L1PA5 LINE L1 4480 5472 -696 * 10648 175 31 27 chrX 49012706 49014108 -127960032 - L1PB1 LINE L1 -1 6150 4756 2459 56 0 7 chrX 49014108 49014411 -127959729 - AluY SINE Alu -10 301 1 10648 175 31 27 chrX 49014411 49014781 -127959359 - L1PB1 LINE L1 -1395 4756 4389 240 35 0 0 chrX 49014781 49014810 -127959330 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 10648 175 31 27 chrX 49014810 49016615 -127957525 - L1PB1 LINE L1 -1762 4389 2555 3112 71 2 15 chrX 49016618 49017134 -127957006 + L1PA5 LINE L1 5442 6141 -13 212 171 0 0 chrX 49017144 49017185 -127956955 + A-rich Low_complexity Low_complexity 5 45 0 2174 182 34 2 chrX 49017186 49017680 -127956460 + L1PA13 LINE L1 5571 6158 -5 6451 200 43 13 chrX 49017686 49019608 -127954532 + L1M2 LINE L1 3750 5738 -562 351 91 0 0 chrX 49019883 49019938 -127954202 - MLT2A1 LTR ERVL 0 444 390 189 94 0 0 chrX 49019958 49019990 -127954150 + (TA)n Simple_repeat Simple_repeat 1 32 0 2727 88 18 8 chrX 49019993 49020393 -127953747 - MLT2A1 LTR ERVL -40 404 1 38054 77 18 3 chrX 49020393 49023648 -127950492 - HERVL-A1 LTR ERVL 0 5654 2283 3283 89 45 128 chrX 49023648 49024313 -127949827 - LTR66 LTR ERVL 0 610 1 38054 77 18 3 chrX 49024313 49026628 -127947512 - HERVL-A1 LTR ERVL -3371 2283 2 423 36 0 0 chrX 49026629 49026684 -127947456 - MLT2A2 LTR ERVL 0 453 399 198 0 0 0 chrX 49026702 49026724 -127947416 + (TA)n Simple_repeat Simple_repeat 2 23 0 2901 119 14 5 chrX 49026728 49027166 -127946974 - MLT2A1 LTR ERVL -2 442 1 2039 235 53 8 chrX 49027401 49027894 -127946246 + MLT2B3 LTR ERVL 1 515 -39 1333 217 27 3 chrX 49027970 49028306 -127945834 + HERVL-B3 LTR ERVL 1 344 -5310 747 167 0 7 chrX 49028306 49028450 -127945690 + L1PA12 LINE L1 4444 4586 -1560 2710 13 0 0 chrX 49028450 49028760 -127945380 - L1PA2 LINE L1 -4 6151 5842 13923 41 2 0 chrX 49028760 49030560 -127943580 + L1P LINE L1 1058 2860 -3286 5432 96 61 4 chrX 49030560 49032126 -127942014 + L1PA12 LINE L1 4581 6158 -10 27668 187 26 4 chrX 49032138 49037398 -127936742 + HERVL-B3 LTR ERVL 387 5763 -1 2883 189 70 17 chrX 49037398 49037890 -127936250 + Ricksha DNA DNA 338 863 -1183 219 289 0 0 chrX 49037890 49037942 -127936198 + (TA)n Simple_repeat Simple_repeat 2 53 0 453 176 0 0 chrX 49037951 49038036 -127936104 + ERVL LTR ERVL 5152 5236 -528 254 159 0 0 chrX 49038056 49038100 -127936040 + MLT2B1 LTR ERVL 477 520 0 542 192 45 23 chrX 49038159 49038336 -127935804 + L1M4 LINE L1 4204 4384 -1762 1822 285 63 33 chrX 49038336 49039216 -127934924 + L1MC3 LINE L1 5575 6488 -1297 2214 133 16 16 chrX 49039216 49039591 -127934549 + THE1C LTR MaLR 1 375 0 1822 285 63 33 chrX 49039591 49039682 -127934458 + L1MC3 LINE L1 6488 6575 -1210 1123 208 102 1 chrX 49039822 49040227 -127933913 + MLT1D LTR MaLR 27 505 0 816 236 19 27 chrX 49040231 49040260 -127933880 + L1MD3 LINE L1 6632 6660 -1335 2138 122 7 3 chrX 49040260 49040564 -127933576 + AluSx SINE Alu 1 305 -7 816 236 19 27 chrX 49040564 49040792 -127933348 + L1MD3 LINE L1 6660 6887 -1108 11499 121 11 56 chrX 49040846 49043653 -127930487 + L1PA7 LINE L1 1 2805 -3656 891 90 28 0 chrX 49043651 49043796 -127930344 + L1P3 LINE L1 1555 1703 -4758 * 757 66 0 8 chrX 49043769 49043890 -127930250 + L1P3 LINE L1 3554 3673 -2788 * 18142 106 0 2 chrX 49043892 49046138 -127928002 + L1PA7 LINE L1 2824 5129 -1340 213 39 0 0 chrX 49046138 49046164 -127927976 + (CAGAA)n Simple_repeat Simple_repeat 4 29 0 18142 106 0 2 chrX 49046164 49047502 -127926638 + L1PA7 LINE L1 5129 6468 -1 1947 136 10 17 chrX 49047672 49047967 -127926173 - AluSq SINE Alu -20 293 1 1024 68 30 23 chrX 49048449 49048582 -127925558 + AluY SINE Alu 1 134 -177 2315 70 13 10 chrX 49048582 49048884 -127925256 + AluY SINE Alu 1 303 -8 1680 166 7 0 chrX 49049062 49049369 -127924771 + L1PA13 LINE L1 5848 6156 -7 519 234 43 78 chrX 49049375 49049527 -127924613 + L1MD3 LINE L1 6973 7114 -881 2245 81 7 7 chrX 49049527 49049824 -127924316 - AluY SINE Alu -14 297 1 519 234 43 78 chrX 49049824 49049927 -127924213 + L1MD3 LINE L1 7114 7219 -776 * 2912 249 49 35 chrX 49049919 49051139 -127923001 + L1M4 LINE L1 917 2261 -4121 1873 122 8 4 chrX 49051139 49051401 -127922739 + AluSx SINE Alu 1 263 -49 2912 249 49 35 chrX 49051401 49051934 -127922206 + L1M4 LINE L1 2261 2785 -3597 292 281 31 0 chrX 49052016 49052112 -127922028 + MLT1F1 LTR MaLR 26 124 -443 1182 241 45 18 chrX 49052137 49052518 -127921622 + L1MD3 LINE L1 7419 7809 -186 829 242 67 76 chrX 49052513 49053054 -127921086 + L1M4 LINE L1 4932 5467 -915 * 200 167 21 0 chrX 49053068 49053116 -127921024 + (TA)n Simple_repeat Simple_repeat 2 50 0 267 328 72 17 chrX 49053128 49053363 -127920777 + L1ME4a LINE L1 2 249 -6293 1903 234 53 11 chrX 49053648 49054718 -127919422 + L1ME4a LINE L1 2226 3344 -3300 30 0 0 0 chrX 49054771 49054801 -127919339 + AT_rich Low_complexity Low_complexity 1 30 0 1795 170 14 3 chrX 49055419 49055713 -127918427 + AluJb SINE Alu 1 297 -15 251 278 0 14 chrX 49056408 49056480 -127917660 + L2 LINE L2 3186 3256 -57 22 35 0 0 chrX 49057016 49057045 -127917095 + AT_rich Low_complexity Low_complexity 1 29 0 761 298 56 49 chrX 49057524 49058500 -127915640 + L1ME4a LINE L1 3942 4924 -1720 399 253 39 26 chrX 49058854 49059008 -127915132 + L1ME4a LINE L1 5420 5575 -1069 290 272 0 0 chrX 49059606 49059687 -127914453 + GA-rich Low_complexity Low_complexity 2 82 0 26 0 0 0 chrX 49061931 49061957 -127912183 + AT_rich Low_complexity Low_complexity 1 26 0 319 197 171 0 chrX 49062106 49062223 -127911917 - L1ME4a LINE L1 -187 5934 5798 322 292 125 12 chrX 49062262 49062430 -127911710 + L1ME4a LINE L1 6238 6424 -195 247 222 28 69 chrX 49062532 49062604 -127911536 + MIR SINE MIR 149 217 -45 222 255 0 0 chrX 49063465 49063516 -127910624 + L2 LINE L2 3263 3313 0 405 255 0 9 chrX 49063753 49063859 -127910281 + MIR SINE MIR 141 245 -17 558 219 19 33 chrX 49065280 49065495 -127908645 + L1MDb LINE L1 889 1100 -5309 * 5174 214 43 21 chrX 49065485 49065852 -127908288 + L1M1 LINE L1 2051 2408 -5157 2626 71 0 0 chrX 49065852 49066163 -127907977 + AluY SINE Alu 1 311 0 285 51 0 0 chrX 49066163 49066202 -127907938 + (TA)n Simple_repeat Simple_repeat 1 39 0 5174 214 43 21 chrX 49066202 49067484 -127906656 + L1M1 LINE L1 2407 3737 -3828 2182 241 28 5 chrX 49067487 49068129 -127906011 + L1M1 LINE L1 3772 4428 -3137 1829 202 55 21 chrX 49068130 49068606 -127905534 - LTR22B LTR ERVK 0 492 1 26457 95 11 4 chrX 49068606 49073088 -127901052 - HERVK22 LTR ERVK 0 6837 2327 4878 112 8 8 chrX 49073528 49074269 -127899871 - HERVK22 LTR ERVK -6096 741 1 1739 206 48 25 chrX 49074269 49074750 -127899390 - LTR22B LTR ERVK 0 492 1 7205 202 46 59 chrX 49074757 49075932 -127898208 + L1M1 LINE L1 4431 5620 -1945 341 93 19 0 chrX 49075932 49075986 -127898154 + (TA)n Simple_repeat Simple_repeat 1 55 0 207 0 0 0 chrX 49075987 49076010 -127898130 + (GA)n Simple_repeat Simple_repeat 2 24 0 7205 202 46 59 chrX 49076010 49076592 -127897548 + L1M1 LINE L1 5620 6208 -1357 2129 124 3 0 chrX 49076592 49076882 -127897258 + AluSg SINE Alu 2 292 -18 195 114 0 0 chrX 49076887 49076922 -127897218 + (TAAAA)n Simple_repeat Simple_repeat 3 37 0 7205 202 46 59 chrX 49076922 49077474 -127896666 + L1M1 LINE L1 6212 6720 -845 315 113 0 0 chrX 49077474 49077527 -127896613 + (CA)n Simple_repeat Simple_repeat 2 54 0 7205 202 46 59 chrX 49077527 49077555 -127896585 + L1M1 LINE L1 6720 6747 -818 25631 73 3 0 chrX 49077559 49081102 -127893038 + L1PA4 LINE L1 7 3559 -2587 11577 48 0 1 chrX 49081102 49083346 -127890794 + L1PA4 LINE L1 3926 6177 0 631 155 0 0 chrX 49083542 49083639 -127890501 - AluJ/FLAM SINE Alu -215 97 1 2022 144 4 32 chrX 49083870 49083907 -127890233 + L1MA5 LINE L1 5283 5319 -853 180 0 0 0 chrX 49083907 49083927 -127890213 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2022 144 4 32 chrX 49083927 49083969 -127890171 + L1MA5 LINE L1 5319 5361 -811 2166 111 6 35 chrX 49083969 49084284 -127889856 + AluSc SINE Alu 1 306 -3 2022 144 4 32 chrX 49084284 49084604 -127889536 + L1MA5 LINE L1 5361 5676 -496 790 215 239 0 chrX 49084607 49084900 -127889240 + L1MA5 LINE L1 5929 6291 -9 858 187 46 26 chrX 49084928 49085233 -127888907 + L1MDb LINE L1 1083 1393 -5016 * 955 282 86 2 chrX 49085225 49085484 -127888656 + L1M4 LINE L1 4382 4618 -1528 2124 92 0 24 chrX 49085484 49085777 -127888363 - AluSg SINE Alu -4 306 21 955 282 86 2 chrX 49085777 49085995 -127888145 + L1M4 LINE L1 4618 4899 -1247 345 97 0 16 chrX 49086070 49086132 -127888008 + L1MA5 LINE L1 6240 6300 0 249 139 0 0 chrX 49086194 49086237 -127887903 + (TA)n Simple_repeat Simple_repeat 1 43 0 252 232 0 42 chrX 49086240 49086335 -127887805 + L1MC4 LINE L1 6614 6704 -1338 319 210 0 0 chrX 49086335 49086397 -127887743 - L1MC4 LINE L1 -1341 6701 6640 1122 139 0 0 chrX 49086398 49086556 -127887584 - AluSp SINE Alu -9 304 147 357 49 59 137 chrX 49086557 49086613 -127887527 + L1P LINE L1 5273 5319 -849 2541 74 0 0 chrX 49086613 49086922 -127887218 + AluY SINE Alu 1 309 -2 357 49 59 137 chrX 49086922 49086967 -127887173 + L1P LINE L1 5319 5366 -802 3996 111 3 0 chrX 49086967 49087589 -127886551 + L1P LINE L1 1796 2419 -3727 617 209 0 0 chrX 49087635 49087769 -127886371 + MER3 DNA MER1_type 58 191 -18 546 167 120 0 chrX 49088400 49088508 -127885632 + MER63 DNA MER1_type 1 747 -315 309 51 0 0 chrX 49088598 49088637 -127885503 + (TG)n Simple_repeat Simple_repeat 1 39 0 1631 202 34 32 chrX 49088873 49089309 -127884831 + MER31B LTR ERV1 20 456 -10 2715 192 36 67 chrX 49089354 49090104 -127884036 + MER31B-int LTR ERV1 10 736 -4200 1776 195 68 14 chrX 49090105 49090617 -127883523 + MER31B-int LTR ERV1 874 1413 -3523 939 302 109 14 chrX 49090619 49091106 -127883034 - MER34 LTR ERV1 -2 540 8 750 246 59 41 chrX 49091114 49091172 -127882968 + MER31B-int LTR ERV1 1412 1467 -3469 1949 209 34 68 chrX 49091172 49091731 -127882409 + MER87 LTR ERV1 1 540 -1 750 246 59 41 chrX 49091731 49091815 -127882325 + MER31B-int LTR ERV1 1467 1548 -3388 1757 103 9 0 chrX 49091815 49092048 -127882092 + AluSp SINE Alu 1 235 -78 750 246 59 41 chrX 49092048 49092395 -127881745 + MER31B-int LTR ERV1 1548 1911 -3025 2134 92 3 40 chrX 49092409 49092713 -127881427 + AluSc SINE Alu 1 293 -16 3103 222 57 122 chrX 49092812 49094342 -127879798 + MER41B-int LTR ERV1 3328 4757 -179 521 110 0 0 chrX 49094342 49094415 -127879725 - MER41B LTR ERV1 -241 394 322 198 303 169 0 chrX 49094493 49094582 -127879558 - L2 LINE L2 -6 3266 3163 2201 95 6 9 chrX 49094582 49094909 -127879231 - MER41B LTR ERV1 -309 326 1 37 0 0 0 chrX 49096834 49096871 -127877269 + AT_rich Low_complexity Low_complexity 1 37 0 2373 239 52 33 chrX 49097103 49097641 -127876499 - L1ME1 LINE L1 -51 6115 5589 3698 157 16 2 chrX 49097641 49098267 -127875873 + MER41B LTR ERV1 1 635 0 2373 239 52 33 chrX 49098267 49098798 -127875342 - L1ME1 LINE L1 -577 5589 5032 2375 66 0 16 chrX 49098798 49099102 -127875038 + AluY SINE Alu 1 299 -12 2373 239 52 33 chrX 49099102 49099189 -127874951 - L1ME1 LINE L1 -1134 5032 4948 363 61 0 0 chrX 49099194 49099243 -127874897 - L1MA3 LINE L1 -463 5842 5794 1571 102 0 0 chrX 49099257 49099493 -127874647 + L1MA2 LINE L1 6068 6303 -1 3012 249 49 72 chrX 49099515 49099994 -127874146 - L1ME1 LINE L1 -1202 4944 4456 2204 75 3 11 chrX 49099994 49100301 -127873839 - AluY SINE Alu 0 305 1 3012 249 49 72 chrX 49100301 49101144 -127872996 - L1ME1 LINE L1 -1690 4456 3664 2107 178 30 2 chrX 49101144 49101577 -127872563 + LTR56 LTR ERV1 1 445 0 3012 249 49 72 chrX 49101577 49101902 -127872238 - L1ME1 LINE L1 -2482 3664 3333 2608 199 14 12 chrX 49101914 49102503 -127871637 - L1MB3 LINE L1 -15 6168 5579 6831 58 5 68 chrX 49102518 49104292 -127869848 + SVA Other Other 1 1386 0 280 229 14 0 chrX 49104553 49104623 -127869517 + HsTC2 DNA Tc2 3 73 -1825 234 164 10 144 chrX 49104661 49104765 -127869375 + LTR9 LTR ERV1 443 532 -80 616 157 33 0 chrX 49104776 49104897 -127869243 - L1MB3 LINE L1 -577 5591 5467 1768 183 128 54 chrX 49104897 49105437 -127868703 - LTR49 LTR ERV1 0 595 16 2449 261 19 21 chrX 49105442 49106213 -127867927 - L1MB3 LINE L1 -699 5481 4709 1333 235 26 7 chrX 49106213 49106515 -127867625 - AluJo SINE Alu -3 309 2 2449 261 19 21 chrX 49106515 49106779 -127867361 - L1MB3 LINE L1 -1471 4709 4446 976 196 52 131 chrX 49106806 49107301 -127866839 - MSTB2 LTR MaLR -1 456 1 1015 203 166 10 chrX 49107301 49107596 -127866544 - MSTB1-int LTR MaLR 0 1651 1311 655 124 0 0 chrX 49107603 49107700 -127866440 - L1PA16 LINE L1 -9 6157 6061 1325 130 0 45 chrX 49107724 49107970 -127866170 - MER57A-int LTR ERV1 0 7537 7303 278 214 31 41 chrX 49107972 49108070 -127866070 - LTR54B LTR ERV1 -337 161 65 10156 116 22 3 chrX 49108070 49109687 -127864453 - MER57A-int LTR ERV1 -1487 6050 4403 2135 173 14 0 chrX 49109662 49110027 -127864113 - MER57A-int LTR ERV1 -7167 370 1 * 2108 179 5 0 chrX 49110050 49110446 -127863694 - MER57A LTR ERV1 -5 398 1 370 318 23 0 chrX 49110448 49110577 -127863563 - MSTB1-int LTR MaLR -599 1052 921 1524 155 11 33 chrX 49110577 49110924 -127863216 + MER61C LTR ERV1 1 434 0 2301 248 43 74 chrX 49110932 49111055 -127863085 - MSTB1-int LTR MaLR -730 921 796 5528 58 26 13 chrX 49111055 49111811 -127862329 + MER4E LTR ERV1 1 766 0 2301 248 43 74 chrX 49111811 49112632 -127861508 - MSTB1-int LTR MaLR -855 796 6 290 243 28 35 chrX 49112618 49112635 -127861505 - L1MB3 LINE L1 -1709 4437 4421 * 1165 219 52 71 chrX 49112635 49113073 -127861067 - MSTB1 LTR MaLR -2 430 1 290 243 28 35 chrX 49113073 49113199 -127860941 - L1MB3 LINE L1 -1725 4421 4295 1477 276 40 28 chrX 49113199 49113391 -127860749 - L1MB3 LINE L1 -2449 3697 3509 2270 107 0 3 chrX 49113391 49113691 -127860449 - AluY SINE Alu -12 299 1 1477 276 40 28 chrX 49113691 49114196 -127859944 - L1MB3 LINE L1 -2637 3509 2988 3772 131 18 2 chrX 49114196 49114752 -127859388 - MER61E LTR ERV1 -4 565 1 1477 276 40 28 chrX 49114752 49114813 -127859327 - L1MB3 LINE L1 -3158 2988 2929 518 237 0 8 chrX 49114937 49115055 -127859085 - MER61E-int LTR ERV1 -195 6790 6674 * 1778 267 64 28 chrX 49115031 49115938 -127858202 - HERV17 LTR ERV1 -310 6675 6085 13859 186 24 13 chrX 49116261 49120329 -127853811 - HERV17 LTR ERV1 -937 6048 1957 3252 222 26 15 chrX 49120364 49121807 -127852333 - HERV17 LTR ERV1 -3053 1901 670 1714 212 62 21 chrX 49121928 49122446 -127851694 - HERV17 LTR ERV1 -6445 540 2 244 244 55 16 chrX 49122480 49122607 -127851533 - LTR46 LTR ERV1 -53 407 276 403 270 10 0 chrX 49122747 49122847 -127851293 - LTR46 LTR ERV1 -359 101 1 203 221 15 15 chrX 49123231 49123299 -127850841 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 23 0 0 0 chrX 49123370 49123393 -127850747 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 49123637 49123665 -127850475 + AT_rich Low_complexity Low_complexity 1 28 0 616 353 29 17 chrX 49123745 49124159 -127849981 + L1PA15-16 LINE L1 1 419 -6430 445 360 29 44 chrX 49124547 49125025 -127849115 + L1M2 LINE L1 727 1197 -5652 8411 246 51 26 chrX 49125112 49126307 -127847833 + L1M2 LINE L1 1479 2642 -4206 2569 53 0 0 chrX 49126307 49126609 -127847531 - AluY SINE Alu -9 302 1 8411 246 51 26 chrX 49126609 49127638 -127846502 + L1M2 LINE L1 2642 3644 -3204 396 0 0 0 chrX 49127638 49127682 -127846458 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 8411 246 51 26 chrX 49127682 49127789 -127846351 + L1M2 LINE L1 3644 3747 -3101 231 36 0 0 chrX 49127789 49127817 -127846323 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 8411 246 51 26 chrX 49127817 49129457 -127844683 + L1M2 LINE L1 3747 5622 -1226 5250 210 47 38 chrX 49129477 49129757 -127844383 + L1PA15-16 LINE L1 1064 1340 -5509 195 100 0 0 chrX 49129757 49129787 -127844353 + (CTG)n Simple_repeat Simple_repeat 1 30 0 5250 210 47 38 chrX 49129787 49130041 -127844099 + L1PA15-16 LINE L1 1340 1590 -5259 4696 138 25 5 chrX 49130041 49130804 -127843336 + MER4E LTR ERV1 1 778 -1 5250 210 47 38 chrX 49130804 49132118 -127842022 + L1PA15-16 LINE L1 1590 2946 -3903 1155 198 51 0 chrX 49132125 49132378 -127841762 + L1PB4 LINE L1 5888 6153 -3 28 48 0 0 chrX 49132425 49132467 -127841673 + AT_rich Low_complexity Low_complexity 1 42 0 623 259 102 0 chrX 49132467 49132683 -127841457 - L1MB7 LINE L1 -17 6167 5930 1889 218 110 32 chrX 49132702 49133870 -127840270 - L1MB7 LINE L1 -317 5867 4590 462 194 93 65 chrX 49133925 49134064 -127840076 - MER21B LTR ERV1 -49 814 672 624 278 64 0 chrX 49134128 49134315 -127839825 - MER21B LTR ERV1 -191 672 474 36921 74 22 2 chrX 49134348 49140367 -127833773 - L1PA5 LINE L1 -5 6149 13 2273 300 19 46 chrX 49140380 49141191 -127832949 + L1PA13 LINE L1 1 789 -5998 3377 233 30 45 chrX 49141466 49142578 -127831562 + L1PA13 LINE L1 1289 2387 -4410 2015 134 23 54 chrX 49142578 49142965 -127831175 - THE1C LTR MaLR 0 375 1 3377 233 30 45 chrX 49142965 49143608 -127830532 + L1PA13 LINE L1 2387 3038 -3759 2339 236 39 3 chrX 49143624 49144309 -127829831 + L1PA13 LINE L1 3850 4559 -2238 1479 150 9 0 chrX 49144310 49144570 -127829570 - MER57A LTR ERV1 -129 305 15 468 241 0 0 chrX 49144588 49144700 -127829440 - MER57A-int LTR ERV1 -2 7535 7424 280 242 11 53 chrX 49144714 49144809 -127829331 - LTR54 LTR ERV1 -210 300 210 261 0 0 0 chrX 49144845 49144874 -127829266 + (A)n Simple_repeat Simple_repeat 1 29 0 510 173 58 0 chrX 49144911 49145015 -127829125 - LTR54 LTR ERV1 -387 123 14 5132 216 32 31 chrX 49145026 49146346 -127827794 - MER57A-int LTR ERV1 -392 7145 5825 446 147 13 0 chrX 49146676 49146751 -127827389 - MER57A-int LTR ERV1 -1716 5821 5746 202 150 25 0 chrX 49146757 49146797 -127827343 + A-rich Low_complexity Low_complexity 2 42 0 380 324 59 0 chrX 49147111 49147281 -127826859 - L3b LINE CR1 -118 1465 1286 1817 283 11 15 chrX 49147453 49148241 -127825899 - L1M4 LINE L1 -3188 2958 2174 4949 182 24 16 chrX 49148244 49149010 -127825130 - L1MA4A LINE L1 -7 6998 6240 2247 107 3 0 chrX 49149010 49149318 -127824822 + AluY SINE Alu 1 309 -2 4949 182 24 16 chrX 49149318 49150088 -127824052 - L1MA4A LINE L1 -765 6240 5451 1749 230 19 12 chrX 49150096 49150509 -127823631 - MSTB1 LTR MaLR -14 418 3 2362 228 22 4 chrX 49150511 49150853 -127823287 - L1MA4A LINE L1 -1392 5456 5121 2600 162 53 66 chrX 49150853 49151471 -127822669 + MER4B LTR ERV1 1 610 0 2362 228 22 4 chrX 49151471 49151812 -127822328 - L1MA4A LINE L1 -1727 5121 4761 1536 211 62 49 chrX 49151846 49152297 -127821843 + LTR2B LTR ERV1 34 490 0 2343 139 8 13 chrX 49152297 49152684 -127821456 + Harlequin LTR ERV1 1 385 -6511 765 92 17 0 chrX 49152680 49152800 -127821340 + Harlequin LTR ERV1 264 385 -6511 * 7621 63 14 43 chrX 49152795 49153986 -127820154 + Harlequin LTR ERV1 263 1419 -5477 * 37136 67 13 9 chrX 49153970 49159040 -127815100 + Harlequin LTR ERV1 1807 6896 0 1563 201 94 35 chrX 49159041 49159498 -127814642 + LTR2B LTR ERV1 7 490 0 2236 217 32 38 chrX 49159502 49159934 -127814206 - L1MA4A LINE L1 -2097 4751 4318 2288 98 3 0 chrX 49159934 49160230 -127813910 - AluY SINE Alu -14 297 1 2236 217 32 38 chrX 49160230 49160278 -127813862 - L1MA4A LINE L1 -2530 4318 4271 1913 109 40 65 chrX 49160278 49160599 -127813541 - AluSq SINE Alu 0 313 1 2236 217 32 38 chrX 49160599 49160827 -127813313 - L1MA4A LINE L1 -2577 4271 4046 2587 155 80 13 chrX 49160830 49161395 -127812745 - MER4B LTR ERV1 0 779 1 2825 236 70 10 chrX 49161430 49162429 -127811711 - L1MA4A LINE L1 -2852 3996 2938 255 244 22 0 chrX 49162463 49162553 -127811587 + L1MC4 LINE L1 6612 6703 -1339 180 111 0 0 chrX 49162554 49162581 -127811559 + (TA)n Simple_repeat Simple_repeat 1 27 0 407 161 21 0 chrX 49162581 49162674 -127811466 - L1MA4A LINE L1 -3950 2899 2805 21 82 0 0 chrX 49162786 49162835 -127811305 + AT_rich Low_complexity Low_complexity 1 49 0 235 330 43 53 chrX 49162961 49163243 -127810897 + L1M3b LINE L1 1364 1642 -5854 213 227 23 0 chrX 49163661 49163705 -127810435 + CT-rich Low_complexity Low_complexity 2 46 0 1007 225 111 17 chrX 49164479 49165142 -127808998 + L1M3b LINE L1 3342 4063 -3502 1956 157 15 22 chrX 49165147 49165556 -127808584 + L1M3b LINE L1 5341 5746 -1819 1312 81 0 23 chrX 49165558 49165767 -127808373 - AluSc SINE Alu 0 316 112 436 292 27 40 chrX 49165854 49166089 -127808051 - L1ME LINE L1 -461 5660 5427 207 0 0 0 chrX 49166197 49166220 -127807920 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 279 54 0 0 chrX 49166223 49166260 -127807880 + (TG)n Simple_repeat Simple_repeat 1 37 0 17861 99 17 3 chrX 49366311 49368766 -127605374 - HERVL LTR ERVL -1118 4536 2049 572 112 22 0 chrX 49368766 49368855 -127605285 - THE1A-int LTR MaLR -1489 91 1 1812 147 37 37 chrX 49368855 49369210 -127604930 - THE1A LTR MaLR 0 355 1 1587 225 14 19 chrX 49369338 49369702 -127604438 - MLT1A1 LTR MaLR -3 362 1 319 354 50 38 chrX 49369978 49370218 -127603922 - MIR SINE MIR -18 244 2 663 299 58 11 chrX 49370370 49370631 -127603509 + MLT1L LTR MaLR 1 273 -342 15840 45 0 27 chrX 49370763 49373543 -127600597 + L1PA5 LINE L1 3394 6153 -1 656 323 49 37 chrX 49374481 49374806 -127599334 - L2 LINE L2 -33 3280 2952 339 272 60 54 chrX 49375278 49375467 -127598673 + MIR SINE MIR 38 232 -30 189 74 0 0 chrX 49376099 49376126 -127598014 + (TC)n Simple_repeat Simple_repeat 2 28 0 353 229 104 0 chrX 49377563 49377659 -127596481 - MIR SINE MIR -83 179 74 511 345 30 25 chrX 49378979 49379214 -127594926 + MIR SINE MIR 20 255 -7 306 293 21 71 chrX 49379277 49379417 -127594723 - MIR SINE MIR -122 140 8 216 362 74 85 chrX 49380380 49380828 -127593312 - L2 LINE L2 -3 3269 2827 5546 262 84 23 chrX 49381057 49381179 -127592961 + L1MB8 LINE L1 89 202 -6757 2116 166 22 0 chrX 49381179 49381535 -127592605 + THE1B LTR MaLR 1 364 0 5546 262 84 23 chrX 49381535 49383185 -127590955 + L1MB8 LINE L1 202 2010 -4949 5674 119 12 16 chrX 49383185 49384519 -127589621 + L1PA10 LINE L1 4836 6168 0 5546 262 84 23 chrX 49384519 49384907 -127589233 + L1MB8 LINE L1 2010 2373 -4586 273 217 11 43 chrX 49384895 49384987 -127589153 + L1MB3 LINE L1 5879 5967 -217 * 9692 126 23 32 chrX 49384980 49387299 -127586841 + L1PA7 LINE L1 364 2708 -3753 14723 112 8 23 chrX 49387300 49390423 -127583717 + L1PA7 LINE L1 3377 6469 0 282 280 19 9 chrX 49390481 49390588 -127583552 + L1MB3 LINE L1 6069 6176 -7 1945 251 49 23 chrX 49390597 49391470 -127582670 + L1MB8 LINE L1 3838 4733 -2224 2790 251 46 12 chrX 49391535 49392644 -127581496 + L1MB8 LINE L1 5830 6984 -5 300 226 75 0 chrX 49392645 49392738 -127581402 + L1M4b LINE L1 5197 5296 -1661 791 196 52 12 chrX 49392738 49392911 -127581229 + L1M1 LINE L1 13 192 -7373 1080 131 170 18 chrX 49392911 49393140 -127581000 + MER21A LTR ERV1 1 264 -667 2930 191 39 7 chrX 49393145 49393684 -127580456 + MER21A LTR ERV1 376 931 0 6016 170 22 17 chrX 49393744 49394855 -127579285 + MER4B-int LTR ERV1 3086 4202 -2556 915 189 7 0 chrX 49395352 49395495 -127578645 - AluJb SINE Alu -55 257 114 7304 237 20 15 chrX 49395678 49397316 -127576824 + L1PA12 LINE L1 13 2430 -5154 1135 203 28 0 chrX 49397313 49397525 -127576615 - L1M1 LINE L1 -7218 347 130 * 5767 180 14 19 chrX 49397523 49399765 -127574375 + L1MA4A LINE L1 4070 6303 0 2850 119 34 30 chrX 49402150 49402687 -127571453 - L1MA3 LINE L1 0 6305 5767 * 5632 114 45 8 chrX 49402679 49404364 -127569776 - L1PA13 LINE L1 0 6163 4440 1175 14 14 0 chrX 49404364 49404505 -127569635 - L1PA4 LINE L1 -2 6153 6011 6596 157 29 14 chrX 49404511 49405767 -127568373 - L1PA13 LINE L1 -1721 4425 3152 1819 174 11 14 chrX 49405861 49406217 -127567923 - L1MB3 LINE L1 -237 6532 6178 1136 174 36 8 chrX 49406222 49406469 -127567671 - L1MA9 LINE L1 -38 6274 6021 3648 275 74 41 chrX 49406564 49407306 -127566834 - L1M4c LINE L1 -4518 2057 1341 239 0 32 0 chrX 49407306 49407337 -127566803 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3648 275 74 41 chrX 49407337 49408366 -127565774 - L1M4c LINE L1 -5234 1341 436 3076 226 31 29 chrX 49408366 49409524 -127564616 - L1MB3 LINE L1 -570 6196 5033 311 43 0 22 chrX 49409569 49409615 -127564525 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 32131 46 3 0 chrX 49409615 49414412 -127559728 - L1PA3 LINE L1 -24 6131 1323 1866 271 44 36 chrX 49414413 49415389 -127558751 - L1MB3 LINE L1 -1703 5029 4046 240 242 48 32 chrX 49415478 49415540 -127558600 - L1MB3 LINE L1 -5251 1402 1340 333 313 76 62 chrX 49415635 49415859 -127558281 - L1M4c LINE L1 -6302 240 14 598 340 54 23 chrX 49415926 49416279 -127557861 + L1MDb LINE L1 16 379 -6030 1049 219 40 20 chrX 49416288 49416585 -127557555 + L1MDb LINE L1 872 1174 -5235 20720 156 17 83 chrX 49416585 49421285 -127552855 + L1PA8 LINE L1 4 4396 -1750 6607 35 0 1 chrX 49421286 49422080 -127552060 - L1PA3 LINE L1 0 6155 5363 6684 97 10 1 chrX 49422080 49423813 -127550327 + L1PA8 LINE L1 4415 6154 -18 342 194 0 0 chrX 49423813 49423885 -127550255 + (TA)n Simple_repeat Simple_repeat 1 72 0 277 289 0 0 chrX 49423888 49423978 -127550162 - L1MC4 LINE L1 -1339 6703 6614 * 278 267 0 0 chrX 49423914 49424004 -127550136 + L1MC4 LINE L1 6614 6703 -1339 318 287 23 0 chrX 49424007 49424094 -127550046 + L1MC4 LINE L1 6615 6703 -1339 235 128 0 0 chrX 49424104 49424151 -127549989 + LTR66 LTR ERVL 394 440 -170 3232 232 67 56 chrX 49424157 49425009 -127549131 + L1P LINE L1 2827 3698 -2448 195 69 0 0 chrX 49425009 49425038 -127549102 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 3232 232 67 56 chrX 49425038 49425419 -127548721 + L1P LINE L1 3698 4073 -2073 20602 108 11 59 chrX 49425420 49429347 -127544793 + L1PA15 LINE L1 2059 5789 -376 621 155 4 40 chrX 49429349 49429578 -127544562 + (TA)n Simple_repeat Simple_repeat 1 220 0 198 0 0 0 chrX 49429591 49429613 -127544527 + (CA)n Simple_repeat Simple_repeat 2 23 0 1916 173 14 8 chrX 49429616 49429985 -127544155 + L1PA15 LINE L1 5795 6165 0 887 268 29 29 chrX 49429986 49430367 -127543773 + L1M4 LINE L1 2970 3350 -2796 828 223 85 10 chrX 49430368 49430801 -127543339 - LTR54B LTR ERV1 -2 496 1 1909 247 45 27 chrX 49430805 49431473 -127542667 + L1M4 LINE L1 3352 4031 -2115 5079 95 60 42 chrX 49431473 49432284 -127541856 - LTR12 LTR ERV1 0 826 1 672 263 35 48 chrX 49432470 49432759 -127541381 - pTR5 LTR ERV1 -1410 1028 744 503 293 0 6 chrX 49432759 49432923 -127541217 + L1M4 LINE L1 4027 4189 -1957 503 303 81 23 chrX 49432986 49433207 -127540933 + MIR SINE MIR 2 235 -27 254 239 158 0 chrX 49433363 49433452 -127540688 - MIR SINE MIR -47 161 60 620 255 20 7 chrX 49433535 49433688 -127540452 - MIR SINE MIR -58 204 50 714 257 131 5 chrX 49433822 49434044 -127540096 + MIR SINE MIR 4 253 -9 645 280 42 19 chrX 49434075 49434289 -127539851 + L2 LINE L2 3095 3313 0 268 286 39 3 chrX 49434413 49434527 -127539613 - MIR3 SINE MIR -27 181 63 199 319 21 53 chrX 49435282 49435376 -127538764 - MIR3 SINE MIR -3 205 115 478 256 67 67 chrX 49435538 49435718 -127538422 - MIR SINE MIR -72 190 11 269 273 0 0 chrX 49435811 49435877 -127538263 - MIR SINE MIR -60 148 83 2177 219 25 35 chrX 49436097 49436664 -127537476 - L1MA10 LINE L1 -1 6333 5773 12638 174 27 42 chrX 49436673 49438647 -127535493 - L1MA2 LINE L1 0 7723 5721 1837 137 74 0 chrX 49438647 49438931 -127535209 - AluSx SINE Alu -7 305 1 12638 174 27 42 chrX 49438931 49441776 -127532364 - L1MA2 LINE L1 -2002 5721 2977 519 156 0 0 chrX 49441786 49441876 -127532264 + L1P LINE L1 5141 5230 -916 1273 88 0 0 chrX 49441896 49442066 -127532074 - L1PA8 LINE L1 -3 6169 6000 711 43 11 0 chrX 49442066 49442158 -127531982 + L1PA8 LINE L1 5880 5972 -200 * 1615 133 6 70 chrX 49442157 49442242 -127531898 - L1MA2 LINE L1 -4578 2987 2898 197 33 33 0 chrX 49442242 49442272 -127531868 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1592 206 7 0 chrX 49442274 49442565 -127531575 - AluSq SINE Alu -20 293 1 1615 133 6 70 chrX 49442565 49442792 -127531348 - L1MA2 LINE L1 -4668 2897 2692 396 0 0 0 chrX 49442794 49442838 -127531302 + (TA)n Simple_repeat Simple_repeat 1 44 0 246 306 28 0 chrX 49442863 49442935 -127531205 + L2 LINE L2 3203 3276 -37 * 366 303 60 65 chrX 49442921 49443106 -127531034 - MIR SINE MIR -51 211 28 379 328 39 8 chrX 49443627 49443781 -127530359 + MIR SINE MIR 20 181 -67 433 281 7 43 chrX 49444281 49444420 -127529720 - L2 LINE L2 0 3313 3180 5312 168 16 16 chrX 49444432 49445405 -127528735 + Tigger1 DNA MER2_type 1 973 -1445 503 180 0 36 chrX 49445406 49445517 -127528623 - L1PA15 LINE L1 -2 6163 6057 2288 168 0 0 chrX 49445519 49445877 -127528263 - THE1B LTR MaLR -6 358 1 709 148 26 0 chrX 49445877 49445992 -127528148 - L1PA15 LINE L1 -106 6059 5942 8491 139 16 3 chrX 49445992 49446232 -127527908 + Tigger1 DNA MER2_type 959 1194 -1224 7220 44 3 1 chrX 49446232 49447317 -127526823 + L1PA4 LINE L1 5069 6155 0 8491 139 16 3 chrX 49447317 49448458 -127525682 + Tigger1 DNA MER2_type 1194 2358 -60 201 369 60 27 chrX 49448496 49448645 -127525495 - MIR SINE MIR -108 154 1 885 205 25 90 chrX 49448753 49448997 -127525143 - MIR SINE MIR -24 238 11 278 274 75 38 chrX 49449057 49449176 -127524964 + MIR SINE MIR 3 133 -75 208 369 0 0 chrX 49449734 49449799 -127524341 + polypurine Low_complexity Low_complexity 1 65 0 322 196 0 0 chrX 49450118 49450174 -127523966 + L2 LINE L2 3255 3310 -3 470 273 15 23 chrX 49450204 49450336 -127523804 - MIR3 SINE MIR -73 135 5 558 275 29 0 chrX 49450543 49450681 -127523459 + MIR3 SINE MIR 64 205 -3 203 365 95 29 chrX 49450740 49450877 -127523263 + L3 LINE CR1 147 292 -1285 282 286 0 0 chrX 49450877 49450940 -127523200 - MER2 DNA MER2_type -1 344 282 207 0 0 0 chrX 49450946 49450969 -127523171 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1770 193 0 0 chrX 49450974 49451279 -127522861 + AluSx SINE Alu 1 305 -7 8119 113 68 2 chrX 49451285 49452565 -127521575 - L1PA7 LINE L1 -3329 2817 1454 16226 115 7 5 chrX 49452565 49454187 -127519953 + L1PA7 LINE L1 2825 4442 -1728 2385 54 0 14 chrX 49454187 49454483 -127519657 + AluY SINE Alu 1 292 -19 16226 115 7 5 chrX 49454483 49456202 -127517938 + L1PA7 LINE L1 4442 6170 0 585 200 30 145 chrX 49456243 49456478 -127517662 - MER2 DNA MER2_type -134 211 4 1664 273 86 99 chrX 49456481 49457779 -127516361 + L3 LINE CR1 291 1570 -7 231 246 42 114 chrX 49458336 49458503 -127515637 + L1MC4a LINE L1 5805 5959 -1849 913 253 80 47 chrX 49458522 49458942 -127515198 + MER66A LTR ERV1 59 431 -47 202 341 44 55 chrX 49459679 49459861 -127514279 + L2 LINE L2 2920 3099 -173 711 211 16 89 chrX 49460262 49460508 -127513632 - L2 LINE L2 0 3313 3086 859 264 37 76 chrX 49460529 49460935 -127513205 + MLT1B LTR MaLR 1 390 0 889 294 193 29 chrX 49460935 49461627 -127512513 - L2 LINE L2 -249 3064 2260 1424 208 68 0 chrX 49461722 49461986 -127512154 + AluJb SINE Alu 1 282 -30 224 48 24 48 chrX 49461986 49462028 -127512112 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 13488 51 0 6 chrX 49462255 49463982 -127510158 + HERV17 LTR ERV1 4302 6018 -2608 276 77 0 0 chrX 49463976 49464015 -127510125 + HERV17 LTR ERV1 7510 7548 -1078 * 2144 87 0 0 chrX 49464005 49464293 -127509847 + HERV17 LTR ERV1 8335 8622 -4 1570 62 111 0 chrX 49464296 49464521 -127509619 + LTR17 LTR ERV1 1 250 -530 261 0 0 0 chrX 49464522 49464551 -127509589 + (A)n Simple_repeat Simple_repeat 1 29 0 12704 187 180 6 chrX 49464978 49468015 -127506125 + L1MA1 LINE L1 12 3575 -3990 11176 186 34 15 chrX 49467999 49469333 -127504807 + L1MA1 LINE L1 3815 5122 -2599 * 7346 32 20 0 chrX 49469333 49470438 -127503702 + L1PA3 LINE L1 5033 6155 0 11176 186 34 15 chrX 49470438 49472925 -127501215 + L1MA1 LINE L1 5122 7715 -6 230 210 81 73 chrX 49473082 49473206 -127500934 + MLT1L LTR MaLR 483 607 -8 741 131 0 0 chrX 49473521 49473643 -127500497 - L1MA1 LINE L1 -304 5998 5877 2364 89 6 19 chrX 49474201 49474514 -127499626 + AluSg SINE Alu 1 309 -1 266 100 43 14 chrX 49474848 49474918 -127499222 - L1MA1 LINE L1 -1006 5338 5267 990 200 0 0 chrX 49474994 49475154 -127498986 - FRAM SINE Alu -20 156 1 217 68 45 0 chrX 49475156 49475200 -127498940 + (TA)n Simple_repeat Simple_repeat 1 46 0 330 286 0 11 chrX 49475201 49475292 -127498848 - L1MC4 LINE L1 -1339 6703 6614 445 214 0 30 chrX 49475292 49475423 -127498717 + (CATATA)n Simple_repeat Simple_repeat 2 128 0 311 296 23 0 chrX 49475424 49475512 -127498628 - L1MC4 LINE L1 -1339 6703 6614 318 266 0 43 chrX 49475546 49475640 -127498500 - L1MC4 LINE L1 -1339 6703 6614 258 176 0 0 chrX 49475645 49475696 -127498444 + (CATA)n Simple_repeat Simple_repeat 3 53 0 359 289 0 0 chrX 49475696 49475786 -127498354 - L1MC4 LINE L1 -1339 6703 6614 204 40 0 0 chrX 49475800 49475825 -127498315 + (CA)n Simple_repeat Simple_repeat 2 26 0 616 171 8 17 chrX 49475830 49475947 -127498193 - FLAM_C SINE Alu -27 116 1 250 247 0 13 chrX 49475956 49476033 -127498107 - L1MDb LINE L1 -878 5528 5453 5646 246 47 7 chrX 49477471 49479315 -127494825 - L1MDb LINE L1 -1260 5146 3230 1403 246 18 5 chrX 49479607 49480046 -127494094 - L1MDb LINE L1 -3113 3293 2849 * 2001 228 57 39 chrX 49480039 49480289 -127493851 - L1MDb LINE L1 -4444 1962 1718 2136 138 6 3 chrX 49480289 49480600 -127493540 + AluSx SINE Alu 1 312 0 2001 228 57 39 chrX 49480600 49481171 -127492969 - L1MDb LINE L1 -4688 1718 1126 1625 174 45 48 chrX 49481177 49481551 -127492589 + THE1C LTR MaLR 3 375 0 7874 155 77 18 chrX 49481555 49483043 -127491097 + THE1C-int LTR MaLR 5 1580 0 1772 169 38 32 chrX 49483043 49483333 -127490807 + THE1C LTR MaLR 1 295 -80 1950 147 16 45 chrX 49483333 49483708 -127490432 + THE1B LTR MaLR 1 364 0 1772 169 38 32 chrX 49483708 49483790 -127490350 + THE1C LTR MaLR 295 375 0 1097 289 176 13 chrX 49483790 49484578 -127489562 - L1MDb LINE L1 -5282 1127 77 199 395 59 0 chrX 49484631 49484750 -127489390 - L2 LINE L2 -599 2715 2590 3895 138 30 4 chrX 49484761 49485455 -127488685 - L1MA2 LINE L1 0 6304 5593 14728 189 45 20 chrX 49485461 49490039 -127484101 - L1PA14 LINE L1 -12 7587 2904 6518 190 19 5 chrX 49490033 49491702 -127482438 - L1PA14 LINE L1 -5602 1979 1 * 3754 146 29 1 chrX 49491704 49492723 -127481417 - L1M1 LINE L1 -696 5606 4556 194 311 81 14 chrX 49492766 49492840 -127481300 - L2 LINE L2 -740 2574 2496 282 258 58 33 chrX 49493531 49493651 -127480489 + MIR SINE MIR 32 154 -108 448 232 30 85 chrX 49495489 49495653 -127478487 + L3 LINE CR1 1213 1367 -210 626 259 0 70 chrX 49496140 49496341 -127477799 + MIR SINE MIR 76 262 0 211 318 77 20 chrX 49496569 49496688 -127477452 + MIR SINE MIR 35 159 -49 284 193 40 7 chrX 49496753 49496903 -127477237 + (TA)n Simple_repeat Simple_repeat 2 156 0 206 182 23 0 chrX 49497400 49497444 -127476696 + (TA)n Simple_repeat Simple_repeat 1 45 0 1852 114 0 0 chrX 49497444 49497698 -127476442 - L1PB3 LINE L1 -6 6148 5895 844 354 143 22 chrX 49498324 49499547 -127474593 + L2 LINE L2 223 1671 -1643 22 0 0 0 chrX 49499919 49499941 -127474199 + AT_rich Low_complexity Low_complexity 1 22 0 586 212 85 0 chrX 49500500 49500618 -127473522 + AluJo/FLAM SINE Alu 2 129 -173 1711 189 0 31 chrX 49500621 49500943 -127473197 + AluJo SINE Alu 1 312 0 1547 93 4 80 chrX 49501749 49501986 -127472154 + AluY SINE Alu 78 296 -15 285 29 0 0 chrX 49502863 49502897 -127471243 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 376 381 66 34 chrX 49502925 49503274 -127470866 + L2 LINE L2 2566 2925 -389 238 235 174 61 chrX 49504754 49504852 -127469288 - L3b LINE CR1 -130 1453 1345 270 358 45 41 chrX 49505797 49506115 -127468025 + L2 LINE L2 2866 3265 -7 321 303 84 34 chrX 49506149 49506268 -127467872 - MIR SINE MIR -65 143 19 182 62 31 0 chrX 49506270 49506302 -127467838 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 561 356 63 43 chrX 49507018 49507574 -127466566 + L2 LINE L2 2130 2696 -618 3274 191 36 35 chrX 49507574 49509056 -127465084 - L1MB8 LINE L1 0 6178 4675 1685 299 99 24 chrX 49509253 49510079 -127464061 + L2 LINE L2 2161 3057 -256 3054 190 17 38 chrX 49510098 49510532 -127463608 + L1MD2 LINE L1 5254 5670 -689 1728 167 4 0 chrX 49510532 49510796 -127463344 + AluSx SINE Alu 20 284 -28 3054 190 17 38 chrX 49510796 49511049 -127463091 + L1MD2 LINE L1 5670 5927 -432 377 240 21 0 chrX 49511198 49511294 -127462846 + L1ME1 LINE L1 6043 6140 -26 352 269 109 29 chrX 49511432 49511607 -127462533 - L2 LINE L2 0 3313 3125 305 375 90 20 chrX 49511783 49511824 -127462316 + L2 LINE L2 1071 1108 -2206 662 242 16 26 chrX 49511824 49512014 -127462126 + MER5A DNA MER1_type 1 188 -1 305 375 90 20 chrX 49512014 49512316 -127461824 + L2 LINE L2 1108 1438 -1876 406 287 92 37 chrX 49512336 49512500 -127461640 - MIR SINE MIR -85 177 5 427 335 19 15 chrX 49512578 49512784 -127461356 + L2 LINE L2 1236 1442 -1872 3755 191 40 0 chrX 49512815 49513518 -127460622 - MER44D DNA MER2_type 0 605 3 204 325 16 78 chrX 49513533 49513724 -127460416 - L2 LINE L2 -1659 1655 1477 542 194 225 0 chrX 49513738 49513867 -127460273 + MER3 DNA MER1_type 47 204 -5 331 347 64 12 chrX 49513885 49514058 -127460082 + L2 LINE L2 1695 1876 -1438 2559 210 47 25 chrX 49514067 49514786 -127459354 + L1M4c LINE L1 921 1655 -4729 364 309 54 60 chrX 49514788 49515157 -127458983 + L1PA12 LINE L1 1 367 -7214 6671 37 0 0 chrX 49515837 49516665 -127457475 - L1P LINE L1 -3280 2866 2039 4199 245 30 26 chrX 49516849 49518321 -127455819 + L1PA12 LINE L1 2403 3878 -3706 * 4296 179 39 19 chrX 49518319 49519944 -127454196 - L1PA15 LINE L1 -134 6734 5079 2656 242 10 10 chrX 49519956 49520646 -127453494 - L1PA15 LINE L1 -3529 3320 2631 834 165 0 0 chrX 49520657 49520784 -127453356 - AluSq/x SINE Alu -183 129 3 263 238 0 0 chrX 49520791 49520854 -127453286 - L1PA15 LINE L1 -4430 2419 2357 * 1558 275 48 10 chrX 49520850 49521729 -127452411 - L1MCc LINE L1 -4667 2455 1344 571 232 72 42 chrX 49521712 49521949 -127452191 + L1ME1 LINE L1 5903 6146 -20 * 22 0 0 0 chrX 49521950 49521972 -127452168 + AT_rich Low_complexity Low_complexity 1 22 0 1606 233 26 0 chrX 49522230 49522535 -127451605 + L1PA13 LINE L1 54 366 -6473 3409 78 7 5 chrX 49522535 49522982 -127451158 + MER9 LTR ERVK 1 448 -63 716 169 10 1 chrX 49522982 49523129 -127451011 + L1PA13 LINE L1 2385 2544 -4305 207 0 0 0 chrX 49523129 49523152 -127450988 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 660 156 9 9 chrX 49523153 49523262 -127450878 - FRAM SINE Alu -32 144 36 11809 186 25 20 chrX 49523262 49525792 -127448348 + L1PA13 LINE L1 2535 5078 -1771 225 0 0 0 chrX 49525794 49525819 -127448321 + (CATTC)n Simple_repeat Simple_repeat 2 26 0 5121 118 42 21 chrX 49525820 49526747 -127447393 + L1PA13 LINE L1 5168 6141 -755 1931 138 0 39 chrX 49526747 49527052 -127447088 + AluSx SINE Alu 1 293 -19 5121 118 42 21 chrX 49527052 49527824 -127446316 + L1PA13 LINE L1 6141 6896 0 21 36 0 0 chrX 49527947 49527975 -127446165 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chrX 49528944 49528982 -127445158 + AT_rich Low_complexity Low_complexity 1 38 0 15077 29 0 0 chrX 49529357 49531921 -127442219 + L1PA2 LINE L1 3592 6155 0 2822 80 0 3 chrX 49532087 49532462 -127441678 - L1PB1 LINE L1 -2 6865 6492 231 218 0 0 chrX 49532463 49532518 -127441622 + (TA)n Simple_repeat Simple_repeat 1 55 0 5173 216 124 18 chrX 49532519 49533338 -127440802 - L1PB1 LINE L1 -360 6507 5776 1722 163 59 42 chrX 49533338 49533695 -127440445 + THE1B LTR MaLR 2 364 0 5173 216 124 18 chrX 49533695 49535394 -127438746 - L1PB1 LINE L1 -1091 5776 3708 1745 201 93 32 chrX 49535394 49535856 -127438284 + LTR2B LTR ERV1 1 490 0 44130 69 15 17 chrX 49535856 49542682 -127431458 + Harlequin LTR ERV1 1 6896 0 1979 196 84 26 chrX 49542682 49543145 -127430995 + LTR2B LTR ERV1 1 490 0 11396 136 127 7 chrX 49543158 49545890 -127428250 - L1PB1 LINE L1 -3167 3695 637 1074 148 53 0 chrX 49545893 49546082 -127428058 - L1PB1 LINE L1 -6663 200 2 587 322 102 22 chrX 49546361 49547274 -127426866 + L1M4 LINE L1 4246 5231 -915 469 229 92 0 chrX 49547349 49547480 -127426660 + L2 LINE L2 2495 2637 -677 421 174 23 0 chrX 49547481 49547567 -127426573 + L2 LINE L2 2154 2241 -1073 240 222 12 0 chrX 49548123 49548204 -127425936 + L1MA4A LINE L1 4386 4467 -1679 1175 8 0 0 chrX 49548205 49548338 -127425802 - L1PA3 LINE L1 -328 5827 5695 2737 30 0 9 chrX 49548338 49548665 -127425475 + L1PA3 LINE L1 5829 6155 0 24 0 0 0 chrX 49548665 49548689 -127425451 + AT_rich Low_complexity Low_complexity 1 24 0 4846 167 41 9 chrX 49548689 49548910 -127425230 + L1MA4A LINE L1 4457 4670 -1633 204 40 0 0 chrX 49548910 49548935 -127425205 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 4846 167 41 9 chrX 49548935 49550419 -127423721 + L1MA4A LINE L1 4670 6280 -23 754 279 37 101 chrX 49550550 49551066 -127423074 + L2 LINE L2 2167 2649 -665 544 325 43 0 chrX 49551089 49551298 -127422842 + L2 LINE L2 612 829 -2485 929 338 84 41 chrX 49551322 49552033 -127422107 + L2 LINE L2 1793 2534 -780 844 237 69 6 chrX 49552230 49552403 -127421737 + MER5A DNA MER1_type 6 189 0 474 361 114 7 chrX 49552403 49552680 -127421460 + L2 LINE L2 3007 3313 0 480 35 0 0 chrX 49553018 49553076 -127421064 + (TA)n Simple_repeat Simple_repeat 2 59 0 1936 148 4 0 chrX 49553076 49553354 -127420786 - AluSx SINE Alu -28 284 6 21 0 0 0 chrX 49553592 49553613 -127420527 + AT_rich Low_complexity Low_complexity 1 21 0 2329 83 0 43 chrX 49554635 49554962 -127419178 - AluSp SINE Alu 0 313 1 1977 162 0 13 chrX 49555030 49555345 -127418795 + AluSx SINE Alu 2 312 0 212 258 48 0 chrX 49555804 49555866 -127418274 - MIR3 SINE MIR -46 162 98 277 108 21 0 chrX 49555869 49555934 -127418206 + L1PA16 LINE L1 5263 5329 -825 1172 122 0 0 chrX 49555939 49556095 -127418045 + AluSg/x SINE Alu 138 293 -17 2953 103 79 4 chrX 49556099 49556567 -127417573 + L1PA16 LINE L1 5655 6157 -9 1073 160 10 25 chrX 49556586 49556786 -127417354 + L1PA16 LINE L1 5968 6164 -2 21 0 0 0 chrX 49556822 49556843 -127417297 + AT_rich Low_complexity Low_complexity 1 21 0 974 288 31 20 chrX 49557318 49557750 -127416390 + MLT1J LTR MaLR 2 481 -30 254 323 16 79 chrX 49557951 49558078 -127416062 + MIR SINE MIR 25 143 -65 436 248 86 0 chrX 49558579 49558684 -127415456 - MER81 DNA DNA 0 114 1 365 250 11 11 chrX 49558691 49558783 -127415357 + L1MC4 LINE L1 6610 6701 -1341 375 258 73 8 chrX 49558794 49558918 -127415222 + MIR SINE MIR 88 219 -43 267 369 26 41 chrX 49559346 49559614 -127414526 + L2 LINE L2 2808 3071 -201 413 304 112 0 chrX 49559767 49559928 -127414212 + L2 LINE L2 2469 2647 -667 206 216 14 0 chrX 49560250 49560324 -127413816 + GA-rich Low_complexity Low_complexity 2 76 0 192 40 0 0 chrX 49560436 49560461 -127413679 + (CA)n Simple_repeat Simple_repeat 1 25 0 288 0 0 0 chrX 49561422 49561454 -127412686 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 296 34 0 chrX 49561465 49561553 -127412587 + L2 LINE L2 1984 2074 -1240 272 293 49 0 chrX 49561629 49561752 -127412388 + L2 LINE L2 2553 2681 -633 290 333 64 50 chrX 49562029 49562170 -127411970 + L2 LINE L2 3125 3267 -5 860 216 16 16 chrX 49563223 49563408 -127410732 - MIR SINE MIR -7 255 71 313 92 0 62 chrX 49563487 49563552 -127410588 + (GGGAGA)n Simple_repeat Simple_repeat 5 65 0 199 323 55 55 chrX 49564127 49564254 -127409886 + MIR SINE MIR 2 128 -134 444 321 109 31 chrX 49564255 49564448 -127409692 - L3 LINE CR1 -3 1574 1367 224 122 24 0 chrX 49564474 49564515 -127409625 + (TA)n Simple_repeat Simple_repeat 1 42 0 583 250 36 83 chrX 49564877 49565221 -127408919 + L1MC/D LINE L1 5387 5717 -462 283 206 111 8 chrX 49565276 49565402 -127408738 - L1MC4 LINE L1 0 8042 7904 304 286 257 20 chrX 49565489 49565734 -127408406 - L1MC4 LINE L1 -233 7809 7507 546 299 45 17 chrX 49565825 49566116 -127408024 + L1ME4a LINE L1 5621 5919 -202 29 70 0 0 chrX 49566233 49566290 -127407850 + AT_rich Low_complexity Low_complexity 1 57 0 188 159 0 23 chrX 49566652 49566696 -127407444 + GA-rich Low_complexity Low_complexity 4 46 0 291 304 30 65 chrX 49566791 49566959 -127407181 - MIR SINE MIR -65 197 36 643 325 34 23 chrX 49568277 49568542 -127405598 - L3 LINE CR1 -12 1565 1298 376 300 82 24 chrX 49569830 49570000 -127404140 + MIR SINE MIR 10 189 -73 657 251 20 7 chrX 49570387 49570553 -127403587 - MIR SINE MIR -58 204 38 438 268 161 18 chrX 49570633 49570801 -127403339 - MIR SINE MIR -60 202 11 462 351 24 24 chrX 49571021 49571226 -127402914 - MIR3 SINE MIR -1 207 3 338 287 60 73 chrX 49571485 49571635 -127402505 - MIR3 SINE MIR -39 169 22 377 279 55 73 chrX 49572086 49572305 -127401835 - MIR SINE MIR 0 262 48 368 280 168 8 chrX 49572892 49573017 -127401123 + MIR SINE MIR 2 146 -116 728 217 16 0 chrX 49573876 49574065 -127400075 + L1PB1 LINE L1 6 197 -6666 * 4352 150 23 26 chrX 49574062 49574967 -127399173 + L1PB1 LINE L1 1392 2293 -4570 41025 32 21 1 chrX 49574967 49580999 -127393141 + L1HS LINE L1 1 6155 0 9209 185 71 97 chrX 49581066 49582154 -127391986 + L1PB1 LINE L1 2262 3376 -3491 7549 37 0 0 chrX 49582154 49583748 -127390392 + L1PA5 LINE L1 4558 6151 -3 9209 185 71 97 chrX 49583748 49584822 -127389318 + L1PB1 LINE L1 3376 4476 -2391 3053 40 0 3 chrX 49584822 49585195 -127388945 + L1PA4 LINE L1 5782 6153 -2 9209 185 71 97 chrX 49585195 49587679 -127386461 + L1PB1 LINE L1 4476 6865 -2 389 294 169 6 chrX 49588470 49588630 -127385510 - MIR3 SINE MIR -9 199 14 355 293 19 0 chrX 49588835 49588948 -127385192 - MIR SINE MIR -62 146 50 287 294 29 44 chrX 49589379 49589515 -127384625 + L3b LINE CR1 1249 1382 -201 310 200 0 0 chrX 49589524 49589589 -127384551 + MER116 DNA Mariner 12 76 -4 820 239 31 54 chrX 49589702 49589962 -127384178 + MIR SINE MIR 9 262 0 191 220 0 60 chrX 49590191 49590241 -127383899 - L2 LINE L2 0 3313 3267 619 290 53 5 chrX 49590275 49590495 -127383645 + MIR SINE MIR 3 235 -27 1523 223 63 5 chrX 49591616 49592043 -127382097 + L1ME3A LINE L1 5719 6170 0 874 235 65 12 chrX 49592412 49592659 -127381481 - MIR SINE MIR 0 262 3 240 386 9 0 chrX 49592860 49592974 -127381166 - MIR SINE MIR -1 261 147 533 228 106 26 chrX 49593186 49593375 -127380765 + MIR SINE MIR 53 256 -6 258 268 158 0 chrX 49593786 49593868 -127380272 + MIR SINE MIR 50 144 -64 680 284 76 0 chrX 49594504 49594729 -127379411 + MIR SINE MIR 21 262 0 2371 91 0 7 chrX 49595201 49595510 -127378630 + AluSp SINE Alu 1 307 -6 404 315 24 36 chrX 49595567 49595732 -127378408 + MIR SINE MIR 49 211 -51 285 243 0 66 chrX 49595806 49595942 -127378198 + GA-rich Low_complexity Low_complexity 4 130 0 361 337 88 33 chrX 49596352 49596571 -127377569 + MIR SINE MIR 19 247 -15 431 303 15 15 chrX 49596612 49596744 -127377396 - MIR3 SINE MIR -37 171 40 680 298 0 0 chrX 49597817 49597995 -127376145 - MIR SINE MIR -26 236 59 413 228 60 107 chrX 49598402 49598617 -127375523 + MIR3 SINE MIR 1 205 -3 394 238 195 24 chrX 49599498 49599662 -127374478 - MER58A DNA MER1_type 0 224 33 744 310 62 4 chrX 49599689 49599915 -127374225 + MIR SINE MIR 2 240 -22 416 317 0 16 chrX 49600031 49600154 -127373986 + MIR3 SINE MIR 40 160 -48 746 311 28 12 chrX 49600575 49600826 -127373314 + MIR SINE MIR 2 256 -6 748 200 123 24 chrX 49601213 49601383 -127372757 - MER5A DNA MER1_type -2 187 1 458 288 177 25 chrX 49601759 49601957 -127372183 + MIR SINE MIR 28 255 -7 774 319 16 31 chrX 49602224 49602547 -127371593 + L2 LINE L2 2439 2756 -558 219 69 0 0 chrX 49602626 49602655 -127371485 + (TG)n Simple_repeat Simple_repeat 1 29 0 249 108 0 0 chrX 49602759 49602796 -127371344 + (CA)n Simple_repeat Simple_repeat 1 37 0 870 331 41 61 chrX 49603064 49603595 -127370545 + L2 LINE L2 2751 3272 0 269 297 0 66 chrX 49604099 49604190 -127369950 - L3 LINE CR1 -80 1497 1413 557 303 36 0 chrX 49604591 49604756 -127369384 + MIR3 SINE MIR 38 208 0 1398 227 97 73 chrX 49605101 49605514 -127368626 + MLT1D LTR MaLR 1 429 -76 1435 78 46 27 chrX 49605514 49605733 -127368407 + L1PA11 LINE L1 5949 6171 -3 1398 227 97 73 chrX 49605733 49605812 -127368328 + MLT1D LTR MaLR 429 505 0 278 293 67 86 chrX 49605812 49606030 -127368110 + MIR SINE MIR 36 248 -14 403 288 84 55 chrX 49606106 49606527 -127367613 + L1ME LINE L1 5300 5743 -419 292 257 53 9 chrX 49606629 49606742 -127367398 + L1MC4 LINE L1 7924 8041 -1 5062 187 53 21 chrX 49607200 49608359 -127365781 - L1MA7 LINE L1 -1601 4545 3349 4990 168 17 43 chrX 49608333 49608463 -127365677 + L1MA7 LINE L1 4538 4670 -1621 * 2002 98 0 0 chrX 49608463 49608728 -127365412 - AluY SINE Alu -12 299 35 4990 168 17 43 chrX 49608728 49609858 -127364282 + L1MA7 LINE L1 4670 5740 -551 2055 123 3 22 chrX 49609858 49610174 -127363966 + AluSg SINE Alu 1 310 0 4990 168 17 43 chrX 49610174 49610710 -127363430 + L1MA7 LINE L1 5740 6288 -3 249 416 0 0 chrX 49611004 49611105 -127363035 + L2 LINE L2 2953 3053 -219 307 317 12 18 chrX 49612349 49612516 -127361624 + CT-rich Low_complexity Low_complexity 2 167 0 2251 99 0 0 chrX 49612814 49613106 -127361034 - AluY SINE Alu -19 292 1 506 357 46 10 chrX 49614043 49614239 -127359901 + MIR3 SINE MIR 3 205 -3 989 309 31 13 chrX 49614349 49614738 -127359402 + L1MDa LINE L1 19 414 -6126 472 206 124 9 chrX 49615038 49615256 -127358884 + L1ME3A LINE L1 4341 4583 -1563 798 167 13 123 chrX 49615256 49615483 -127358657 - MLT1A1 LTR MaLR 0 365 164 1684 215 21 31 chrX 49615535 49616014 -127358126 + L1ME3A LINE L1 4849 5322 -824 550 190 6 121 chrX 49616020 49616194 -127357946 + L1ME3A LINE L1 5993 6146 -24 700 178 0 47 chrX 49616693 49616771 -127357369 + L1M3c LINE L1 5 85 -6952 1991 156 14 23 chrX 49616771 49617117 -127357023 - MER61A LTR ERV1 0 343 1 700 178 0 47 chrX 49617117 49617189 -127356951 + L1M3c LINE L1 85 971 -6066 1316 167 9 5 chrX 49617190 49617406 -127356734 - MER61A LTR ERV1 -126 217 1 1307 287 61 46 chrX 49617407 49618150 -127355990 + L1M3e LINE L1 70 1925 -5105 8243 209 37 71 chrX 49618222 49619682 -127354458 + L1MA1 LINE L1 1049 2558 -5007 6070 98 10 14 chrX 49619682 49620691 -127353449 + L1PA14 LINE L1 5148 6152 -9 8243 209 37 71 chrX 49620691 49620703 -127353437 + L1MA1 LINE L1 2558 2569 -4996 1859 166 0 0 chrX 49620703 49620986 -127353154 + AluJb SINE Alu 7 289 -23 8243 209 37 71 chrX 49620986 49620999 -127353141 + L1MA1 LINE L1 2569 2581 -4984 2026 69 0 0 chrX 49620999 49621244 -127352896 + AluSc SINE Alu 65 309 0 8243 209 37 71 chrX 49621244 49623438 -127350702 + L1MA1 LINE L1 2581 4610 -2955 3631 21 0 0 chrX 49623435 49623863 -127350277 - L1HS LINE L1 -865 5281 4854 * 7495 8 0 0 chrX 49623862 49624705 -127349435 + L1HS LINE L1 5313 6155 0 24 53 0 0 chrX 49624816 49624854 -127349286 + AT_rich Low_complexity Low_complexity 1 38 0 10685 162 14 17 chrX 49624873 49625518 -127348622 + L1MA1 LINE L1 4540 5185 -2536 6618 75 9 1 chrX 49625518 49626527 -127347613 + L1PA7 LINE L1 5138 6153 -1 10685 162 14 17 chrX 49626527 49629071 -127345069 + L1MA1 LINE L1 5185 7719 -2 2089 121 7 0 chrX 49629071 49629360 -127344780 - AluSp SINE Alu -22 291 1 23 0 0 0 chrX 49629360 49629383 -127344757 + AT_rich Low_complexity Low_complexity 1 23 0 2566 174 39 18 chrX 49629383 49630177 -127343963 + L1M2 LINE L1 4978 5793 -519 35 0 0 0 chrX 49630186 49630221 -127343919 + AT_rich Low_complexity Low_complexity 1 35 0 1103 157 5 5 chrX 49630258 49630456 -127343684 + L1PB2 LINE L1 3 200 -6663 1218 146 14 32 chrX 49630458 49630677 -127343463 + L1PB2 LINE L1 636 850 -6013 * 7850 208 42 85 chrX 49630674 49631549 -127342591 + L1PB2 LINE L1 2182 3093 -3769 1999 121 0 41 chrX 49631549 49631864 -127342276 - AluSg SINE Alu -6 304 3 7850 208 42 85 chrX 49631864 49634009 -127340131 + L1PB2 LINE L1 3093 5099 -1763 23737 144 16 128 chrX 49634009 49639038 -127335102 + L1PA8 LINE L1 5 5597 -554 1893 155 153 58 chrX 49639038 49639503 -127334637 - LTR22 LTR ERVK 0 509 1 3501 76 0 14 chrX 49639504 49639989 -127334151 + L1PA8 LINE L1 5691 6168 -4 3646 49 0 0 chrX 49639994 49640444 -127333696 + L1PA5 LINE L1 5705 6154 0 23737 144 16 128 chrX 49640444 49641545 -127332595 + L1PA8 LINE L1 4207 5430 -721 299 25 25 0 chrX 49641648 49641688 -127332452 + (CAA)n Simple_repeat Simple_repeat 2 42 0 359 309 12 6 chrX 49641688 49641850 -127332290 - L2 LINE L2 -2234 1080 918 379 276 41 16 chrX 49642099 49642222 -127331918 + MIR SINE MIR 137 262 0 2131 129 0 0 chrX 49642492 49642787 -127331353 - AluSx SINE Alu -17 295 1 1453 233 90 23 chrX 49643158 49643591 -127330549 + MLT1C LTR MaLR 6 467 0 198 327 0 0 chrX 49644391 49644443 -127329697 - L2 LINE L2 -7 3265 3214 5795 145 2 32 chrX 49644872 49646167 -127327973 + L1PB2 LINE L1 5620 6866 -1 31 44 0 0 chrX 49646332 49646377 -127327763 + AT_rich Low_complexity Low_complexity 1 45 0 294 245 132 0 chrX 49646441 49646547 -127327593 - L1ME4a LINE L1 -12 6109 5990 36 0 0 0 chrX 49646572 49646608 -127327532 + AT_rich Low_complexity Low_complexity 1 36 0 417 283 122 51 chrX 49646735 49647046 -127327094 - L1ME4a LINE L1 -375 5746 5414 391 255 72 39 chrX 49647084 49647253 -127326887 - L1ME4a LINE L1 -797 5349 5175 1632 97 30 41 chrX 49647803 49648071 -127326069 + L1PA8A LINE L1 5867 6131 0 353 279 53 18 chrX 49648105 49648243 -127325897 - MIR3 SINE MIR -8 200 56 294 29 0 0 chrX 49648694 49648729 -127325411 + (TG)n Simple_repeat Simple_repeat 2 36 0 1599 182 44 3 chrX 49649040 49649337 -127324803 - AluJo SINE Alu -3 309 1 276 30 0 0 chrX 49649492 49649525 -127324615 + (TG)n Simple_repeat Simple_repeat 2 34 0 447 168 129 0 chrX 49649586 49649687 -127324453 - MER5C DNA MER1_type 0 324 211 556 258 0 0 chrX 49649713 49649837 -127324303 - MER5C DNA MER1_type -200 124 1 232 270 40 81 chrX 49649837 49650004 -127324136 + L2 LINE L2 2911 3070 -202 801 179 17 11 chrX 49650074 49650253 -127323887 - L1MB8 LINE L1 -12 6166 5987 410 313 45 30 chrX 49650958 49651092 -127323048 + L2 LINE L2 3137 3272 0 38621 77 9 9 chrX 49653246 49659392 -127314748 + L1PA6 LINE L1 11 6153 -1 193 98 49 0 chrX 49659688 49659729 -127314411 + T-rich Low_complexity Low_complexity 3 45 0 2150 144 0 0 chrX 49660122 49660434 -127313706 + AluSx SINE Alu 1 312 0 792 226 38 11 chrX 49660696 49660882 -127313258 + Charlie1 DNA MER1_type 1 191 -2570 666 194 43 21 chrX 49660879 49661065 -127313075 + Charlie1 DNA MER1_type 2572 2761 0 * 211 306 0 0 chrX 49662641 49662703 -127311437 - L2 LINE L2 -5 3308 3247 845 129 0 7 chrX 49663632 49663772 -127310368 - L1PA16 LINE L1 -1 6165 6027 304 274 44 0 chrX 49663788 49663901 -127310239 - L1MA9 LINE L1 -2 6310 6193 280 227 0 0 chrX 49663896 49663962 -127310178 - L1 LINE L1 -1604 4542 4477 * 240 303 0 0 chrX 49663990 49664079 -127310061 - L1MC4 LINE L1 -1339 6703 6615 201 182 0 0 chrX 49664080 49664113 -127310027 + (TA)n Simple_repeat Simple_repeat 2 34 0 229 344 0 0 chrX 49664114 49664204 -127309936 - L1MC4 LINE L1 -1339 6703 6614 205 329 0 14 chrX 49664348 49664421 -127309719 + (TATG)n Simple_repeat Simple_repeat 4 75 0 238 258 22 22 chrX 49664427 49664516 -127309624 - L1MC4 LINE L1 -1339 6703 6615 252 286 0 0 chrX 49664517 49664601 -127309539 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 226 263 0 63 chrX 49664615 49664710 -127309430 - L1MC4 LINE L1 -1339 6703 6615 237 211 0 0 chrX 49664713 49664765 -127309375 + (TA)n Simple_repeat Simple_repeat 2 53 0 276 270 0 0 chrX 49664765 49664854 -127309286 - L1MC4 LINE L1 -1339 6703 6615 318 291 0 0 chrX 49664857 49664967 -127309173 + (TA)n Simple_repeat Simple_repeat 2 111 0 232 229 16 0 chrX 49664973 49665034 -127309106 - L1MCa LINE L1 -4359 2067 2006 * 255 242 61 0 chrX 49665002 49665101 -127309039 - L1MC4 LINE L1 -1340 6982 6878 * 11490 109 21 49 chrX 49665094 49667821 -127306319 - L1PA8A LINE L1 -20 6111 3469 2546 162 38 0 chrX 49667813 49668258 -127305882 - L1PA16 LINE L1 -116 6050 5589 * 656 284 9 9 chrX 49668286 49668497 -127305643 + L1PB1 LINE L1 6 216 -6647 * 13849 203 24 9 chrX 49668474 49672196 -127301944 + L1PB1 LINE L1 1392 5057 -1810 2273 115 0 3 chrX 49672196 49672508 -127301632 + AluSq SINE Alu 3 313 0 13849 203 24 9 chrX 49672508 49673767 -127300373 + L1PB1 LINE L1 5057 6489 -378 456 63 13 25 chrX 49673767 49673846 -127300294 + (TA)n Simple_repeat Simple_repeat 2 79 0 13849 203 24 9 chrX 49673846 49673879 -127300261 + L1PB1 LINE L1 6489 6520 -347 207 64 43 21 chrX 49673924 49673971 -127300169 + (TA)n Simple_repeat Simple_repeat 1 48 0 2554 113 0 3 chrX 49673992 49674363 -127299777 + L1PB1 LINE L1 6498 6867 0 669 139 0 0 chrX 49674370 49674471 -127299669 - L1P4 LINE L1 -564 5602 5502 1969 30 0 0 chrX 49676520 49676756 -127297384 - L1PA4 LINE L1 -3 6152 5917 881 289 0 38 chrX 49676889 49677128 -127297012 - MIR SINE MIR -2 260 31 3529 187 102 79 chrX 49677182 49678377 -127295763 - L1MC4 LINE L1 0 8042 6820 21 36 0 0 chrX 49679453 49679481 -127294659 + AT_rich Low_complexity Low_complexity 1 28 0 628 213 30 0 chrX 49680396 49680565 -127293575 - L1MA4 LINE L1 -1 6299 6126 1037 147 6 0 chrX 49680587 49680744 -127293396 - FRAM SINE Alu -4 162 5 1369 207 16 30 chrX 49680776 49681080 -127293060 + AluJb SINE Alu 1 300 -12 180 0 0 0 chrX 49681278 49681298 -127292842 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7337 9 2 6 chrX 49681298 49682142 -127291998 - L1PA2 LINE L1 -12 6143 5303 278 241 23 0 chrX 49682506 49682593 -127291547 + (TA)n Simple_repeat Simple_repeat 1 89 0 2065 132 3 7 chrX 49682621 49682924 -127291216 + AluSx SINE Alu 1 302 -10 2167 200 46 33 chrX 49682929 49683599 -127290541 - L1MB7 LINE L1 -22 6162 5447 1766 163 11 4 chrX 49684549 49684826 -127289314 + AluJo SINE Alu 1 279 -33 528 70 105 0 chrX 49684827 49684941 -127289199 + GA-rich Low_complexity Low_complexity 1 126 0 221 229 42 0 chrX 49685042 49685090 -127289050 + polypurine Low_complexity Low_complexity 3 52 0 843 37 92 12 chrX 49685090 49685253 -127288887 + GA-rich Low_complexity Low_complexity 3 178 0 261 0 0 0 chrX 49688208 49688237 -127285903 + (T)n Simple_repeat Simple_repeat 1 29 0 204 125 0 0 chrX 49688944 49688976 -127285164 + (T)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chrX 49689670 49689699 -127284441 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 226 213 21 0 chrX 49690225 49690272 -127283868 - L3 LINE CR1 -9 1568 1521 374 369 11 32 chrX 49693179 49693366 -127280774 + MIR SINE MIR 35 217 -45 1900 85 11 0 chrX 49693777 49694048 -127280092 + L1MA5A LINE L1 6012 6285 -12 7979 10 0 0 chrX 49694450 49696006 -127278134 - L1PA2 LINE L1 0 6155 4600 226 179 0 0 chrX 49696006 49696045 -127278095 + L1PA2 LINE L1 4562 4600 -1546 592 237 0 7 chrX 49696590 49696798 -127277342 + FLAM_A SINE Alu 8 214 0 545 200 0 0 chrX 49696810 49696900 -127277240 - Tigger3(Golem) DNA MER2_type -1 3028 2939 8810 201 35 18 chrX 49696971 49701136 -127273004 + L1PBa LINE L1 6 4514 -2348 810 99 0 0 chrX 49701136 49701244 -127272896 + L1PB1 LINE L1 6038 6148 -3 22 0 0 0 chrX 49702794 49702816 -127271324 + AT_rich Low_complexity Low_complexity 1 22 0 244 200 20 0 chrX 49703171 49703221 -127270919 - L2 LINE L2 -1 3312 3262 394 225 78 49 chrX 49703448 49703590 -127270550 + L2 LINE L2 3168 3313 0 2235 104 27 0 chrX 49703660 49703958 -127270182 - AluSx SINE Alu -6 306 1 21 0 0 0 chrX 49704428 49704449 -127269691 + AT_rich Low_complexity Low_complexity 1 21 0 850 225 0 30 chrX 49704869 49704913 -127269227 - MER5B DNA MER1_type -2 176 132 2507 97 73 6 chrX 49704913 49705254 -127268886 + THE1B LTR MaLR 1 364 0 850 225 0 30 chrX 49705254 49705378 -127268762 - MER5B DNA MER1_type -46 132 13 207 293 0 0 chrX 49705599 49705657 -127268483 + C-rich Low_complexity Low_complexity 1 58 0 486 0 0 0 chrX 49709218 49709272 -127264868 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 25 0 0 0 chrX 49709905 49709930 -127264210 + AT_rich Low_complexity Low_complexity 1 25 0 189 273 30 30 chrX 49710298 49710364 -127263776 + L3b LINE CR1 1172 1237 -346 1759 116 65 55 chrX 49710492 49710785 -127263355 - AluSx SINE Alu -15 297 2 270 307 79 20 chrX 49710903 49711004 -127263136 + L2 LINE L2 3136 3242 -30 187 329 12 24 chrX 49711033 49711115 -127263025 + L3b LINE CR1 1370 1450 -133 483 250 83 6 chrX 49711209 49711365 -127262775 - L2 LINE L2 0 3313 3146 268 233 164 17 chrX 49712110 49712226 -127261914 + MIR SINE MIR 20 152 -110 253 296 168 24 chrX 49712502 49712627 -127261513 - MIR SINE MIR -3 259 117 866 305 100 27 chrX 49712698 49713252 -127260888 - L1MC4a LINE L1 -75 6046 5448 305 175 113 62 chrX 49713413 49713510 -127260630 - L1ME4a LINE L1 -2 6119 6018 43 71 0 0 chrX 49713541 49713626 -127260514 + AT_rich Low_complexity Low_complexity 1 85 0 1116 182 0 80 chrX 49713782 49714046 -127260094 - L1MB8 LINE L1 0 6178 5936 809 181 31 0 chrX 49714397 49714557 -127259583 + FRAM SINE Alu 9 173 -3 444 305 111 35 chrX 49714790 49715016 -127259124 + MIR SINE MIR 2 244 -18 420 292 6 64 chrX 49715587 49715758 -127258382 + MIR3 SINE MIR 42 202 -6 1115 283 114 43 chrX 49715811 49716695 -127257445 + L2 LINE L2 2128 3089 -224 2216 208 11 57 chrX 49716695 49717224 -127256916 - MLT1D LTR MaLR 0 505 1 1115 283 114 43 chrX 49717224 49717315 -127256825 + L2 LINE L2 3089 3172 -141 399 171 0 133 chrX 49717374 49717479 -127256661 - HAL1 LINE L1 -107 2400 2310 27 0 0 0 chrX 49717579 49717606 -127256534 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chrX 49717668 49717690 -127256450 + AT_rich Low_complexity Low_complexity 1 22 0 260 272 125 37 chrX 49717709 49717845 -127256295 + L2 LINE L2 3158 3305 -8 362 273 0 0 chrX 49717879 49717956 -127256184 + MER63 DNA MER1_type 712 788 -273 208 184 0 19 chrX 49718115 49718192 -127255948 - MIR SINE MIR -70 138 16 186 342 38 56 chrX 49718406 49718672 -127255468 + L2 LINE L2 2831 3091 -181 252 270 9 18 chrX 49718751 49718862 -127255278 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 240 331 11 17 chrX 49718786 49718964 -127255176 + (TATG)n Simple_repeat Simple_repeat 4 180 0 * 263 328 17 17 chrX 49718935 49719115 -127255025 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 342 0 0 0 chrX 49719129 49719167 -127254973 + (TG)n Simple_repeat Simple_repeat 2 39 0 295 324 24 24 chrX 49719597 49719722 -127254418 + MIR SINE MIR 47 172 -76 249 321 112 15 chrX 49720024 49720158 -127253982 + MIR SINE MIR 2 148 -114 363 331 39 8 chrX 49720442 49720569 -127253571 - MIR3 SINE MIR -64 144 14 438 53 0 0 chrX 49720769 49720826 -127253314 + (TG)n Simple_repeat Simple_repeat 1 57 0 1116 305 93 14 chrX 49722752 49723169 -127250971 - L3 LINE CR1 -15 1562 1113 351 121 0 0 chrX 49723746 49723804 -127250336 + (TG)n Simple_repeat Simple_repeat 1 58 0 241 202 20 81 chrX 49723945 49724044 -127250096 + MIR3 SINE MIR 104 196 -12 181 98 49 0 chrX 49724578 49724619 -127249521 + (TATAA)n Simple_repeat Simple_repeat 3 45 0 35 24 0 0 chrX 49724630 49724672 -127249468 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chrX 49724701 49724738 -127249402 + AT_rich Low_complexity Low_complexity 1 37 0 563 71 33 60 chrX 49724738 49724921 -127249219 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 637 44 49 77 chrX 49724937 49725120 -127249020 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 782 39 33 66 chrX 49725136 49725317 -127248823 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 779 83 13 63 chrX 49725321 49725639 -127248501 + (TATAA)n Simple_repeat Simple_repeat 1 302 0 219 75 19 38 chrX 49725643 49725696 -127248444 + (TTATA)n Simple_repeat Simple_repeat 2 53 0 347 264 11 11 chrX 49725705 49725796 -127248344 - MIR SINE MIR -108 154 64 333 270 7 44 chrX 49726033 49726170 -127247970 + GA-rich Low_complexity Low_complexity 1 132 0 212 268 0 18 chrX 49726838 49726894 -127247246 - L3 LINE CR1 -152 1425 1371 190 291 18 18 chrX 49726972 49727027 -127247113 - L3 LINE CR1 -214 1363 1309 225 132 0 0 chrX 49727488 49727526 -127246614 + (CCCCCA)n Simple_repeat Simple_repeat 1 38 0 275 348 13 51 chrX 49728075 49728233 -127245907 - MIR3 SINE MIR -3 205 54 556 268 62 5 chrX 49730041 49730262 -127243878 - MIR SINE MIR -13 249 18 196 118 20 20 chrX 49730315 49730366 -127243774 + (TTTG)n Simple_repeat Simple_repeat 1 51 0 424 280 42 37 chrX 49730515 49730704 -127243436 + MARNA DNA Mariner 2 191 -395 217 337 12 12 chrX 49731122 49731208 -127242932 - MIR SINE MIR -72 190 105 209 265 29 0 chrX 49731835 49731903 -127242237 + (TA)n Simple_repeat Simple_repeat 2 71 0 616 322 93 40 chrX 49732034 49732506 -127241634 + L2 LINE L2 1892 2388 -926 367 237 23 92 chrX 49732775 49732906 -127241234 + L2 LINE L2 3189 3310 -3 1810 255 120 37 chrX 49733176 49733819 -127240321 - L1M4 LINE L1 -5846 696 1 427 211 67 0 chrX 49733867 49733957 -127240183 - Charlie4 DNA MER1_type -1849 112 17 225 289 53 26 chrX 49734482 49734558 -127239582 + MIR SINE MIR 41 118 -90 188 154 26 51 chrX 49734945 49734984 -127239156 - L2 LINE L2 -31 3241 3204 335 248 88 18 chrX 49736121 49736234 -127237906 - MIR3 SINE MIR -2 206 86 1253 209 17 42 chrX 49736234 49736521 -127237619 - MLT1D LTR MaLR 0 505 226 541 204 0 0 chrX 49736518 49736606 -127237534 - MLT1D LTR MaLR -417 88 1 * 196 267 0 0 chrX 49736606 49736651 -127237489 - MIR SINE MIR -118 90 46 229 314 69 39 chrX 49738406 49738508 -127235632 + L2 LINE L2 2713 2817 -497 278 298 158 0 chrX 49738612 49738726 -127235414 - L2 LINE L2 -5 3267 3136 261 0 0 0 chrX 49741064 49741093 -127233047 + (TG)n Simple_repeat Simple_repeat 1 29 0 296 298 145 8 chrX 49741747 49741878 -127232262 - MIR3 SINE MIR -32 176 28 612 227 13 7 chrX 49742177 49742331 -127231809 - MER103 DNA DNA -3 163 9 266 336 103 0 chrX 49742513 49742629 -127231511 - L2 LINE L2 -2 3270 3143 844 337 12 4 chrX 49743829 49744078 -127230062 + MIR SINE MIR 8 258 -4 314 318 16 16 chrX 49744187 49744316 -127229824 - MIR3 SINE MIR -4 204 76 293 304 61 49 chrX 49744970 49745116 -127229024 + MIR SINE MIR 37 182 -63 424 213 219 43 chrX 49745965 49746129 -127228011 + MIR3 SINE MIR 15 207 -1 428 307 0 47 chrX 49746355 49746482 -127227658 - MIR SINE MIR -58 150 30 325 302 134 17 chrX 49747129 49747308 -127226832 - MIR3 SINE MIR -8 200 1 1073 211 17 0 chrX 49747361 49747536 -127226604 - MER45A DNA AcHobo 0 178 1 504 244 144 27 chrX 49747607 49747831 -127226309 - MIR SINE MIR -11 251 5 337 298 258 0 chrX 49748225 49748376 -127225764 + MIR3 SINE MIR 11 200 -8 340 259 29 72 chrX 49749158 49749297 -127224843 + MIR3 SINE MIR 15 147 -61 194 309 135 56 chrX 49749517 49749695 -127224445 + L2 LINE L2 3027 3218 -54 1087 187 150 7 chrX 49750285 49750571 -127223569 - MER33 DNA MER1_type -8 316 1 197 279 0 0 chrX 49750572 49750615 -127223525 - L2 LINE L2 -93 3179 3137 585 222 24 16 chrX 49750670 49750796 -127223344 + MIR SINE MIR 19 145 -63 704 341 83 15 chrX 49750805 49751326 -127222814 - L2 LINE L2 0 3313 2748 314 340 100 7 chrX 49751438 49751588 -127222552 - L2 LINE L2 -226 3046 2883 640 180 14 29 chrX 49751749 49751888 -127222252 - MIR SINE MIR 0 262 126 626 140 4 0 chrX 49752340 49752448 -127221692 - LTR23 LTR ERV1 -10 435 320 21 0 0 0 chrX 49752521 49752542 -127221598 + AT_rich Low_complexity Low_complexity 1 21 0 1006 128 27 0 chrX 49752579 49752728 -127221412 + FAM SINE Alu 17 169 -16 2340 159 64 9 chrX 49752728 49753182 -127220958 + L1MA7 LINE L1 5813 6291 0 567 272 89 6 chrX 49753720 49753900 -127220240 - MIR SINE MIR -11 251 57 250 245 0 0 chrX 49754054 49754103 -127220037 + L2 LINE L2 3181 3229 -84 459 219 80 20 chrX 49754249 49754400 -127219740 + L2 LINE L2 3149 3308 -5 324 271 36 84 chrX 49754545 49754639 -127219501 + MIR3 SINE MIR 35 119 -89 2701 121 51 14 chrX 49754639 49755052 -127219088 - MSTA LTR MaLR 0 428 1 324 271 36 84 chrX 49755052 49755123 -127219017 + MIR3 SINE MIR 119 192 -16 233 268 0 0 chrX 49755165 49755221 -127218919 - L2 LINE L2 -78 3235 3180 214 190 38 63 chrX 49755412 49755570 -127218570 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 524 42 14 0 chrX 49755575 49755646 -127218494 + (TA)n Simple_repeat Simple_repeat 1 72 0 457 348 86 0 chrX 49756217 49756404 -127217736 - MIR SINE MIR -9 253 51 210 333 12 0 chrX 49756578 49756662 -127217478 - L3b LINE CR1 -187 1396 1312 207 317 134 0 chrX 49757313 49757395 -127216745 + L2 LINE L2 3172 3264 -8 202 388 0 0 chrX 49758072 49758170 -127215970 + L2 LINE L2 2685 2782 -532 385 359 70 36 chrX 49758278 49758607 -127215533 + L2 LINE L2 2925 3264 -8 2242 110 3 0 chrX 49758868 49759169 -127214971 - AluSg SINE Alu -8 302 1 4232 178 52 42 chrX 49759473 49760298 -127213842 - MER21A LTR ERV1 0 931 99 207 0 0 0 chrX 49760319 49760342 -127213798 + (CA)n Simple_repeat Simple_repeat 2 24 0 252 73 0 49 chrX 49760349 49760390 -127213750 - MER39 LTR ERV1 -592 115 77 315 0 0 0 chrX 49760413 49760448 -127213692 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 315 4 90 chrX 49760505 49760642 -127213498 + MIR SINE MIR 20 147 -61 205 242 22 11 chrX 49761744 49761835 -127212305 + T-rich Low_complexity Low_complexity 4 95 0 197 192 0 19 chrX 49761967 49762019 -127212121 + GA-rich Low_complexity Low_complexity 2 52 0 288 0 0 0 chrX 49762031 49762063 -127212077 + (CAG)n Simple_repeat Simple_repeat 1 32 0 218 364 10 50 chrX 49762504 49762603 -127211537 + MIR3 SINE MIR 73 167 -41 200 415 0 0 chrX 49762602 49762684 -127211456 - MIR3 SINE MIR -21 187 106 * 1756 163 7 4 chrX 49762761 49763038 -127211102 + AluJb SINE Alu 23 300 -12 450 264 101 111 chrX 49763192 49763598 -127210542 + L2 LINE L2 2909 3310 -3 1245 194 5 0 chrX 49764570 49764787 -127209353 + AluJb SINE Alu 85 302 -10 205 217 133 17 chrX 49764860 49764920 -127209220 - L2 LINE L2 -1 3271 3205 229 326 65 91 chrX 49765047 49765277 -127208863 - L2 LINE L2 -213 3059 2836 2146 159 5 49 chrX 49765958 49766349 -127207791 + MLT1B LTR MaLR 17 390 0 279 352 85 13 chrX 49766680 49766863 -127207277 + MIR SINE MIR 16 208 -54 312 27 0 0 chrX 49767840 49767877 -127206263 + (CA)n Simple_repeat Simple_repeat 2 38 0 853 293 28 4 chrX 49767879 49768132 -127206008 + L3 LINE CR1 863 1121 -456 208 331 8 0 chrX 49768807 49768928 -127205212 + (TTG)n Simple_repeat Simple_repeat 1 122 0 357 269 71 76 chrX 49769359 49769556 -127204584 + L2 LINE L2 3115 3310 -3 697 274 83 10 chrX 49769687 49769980 -127204160 + L1MC4a LINE L1 5296 5612 -509 444 189 53 89 chrX 49769984 49770153 -127203987 + L1MC5 LINE L1 7751 7913 -48 640 287 113 7 chrX 49770254 49770564 -127203576 + L1MC4a LINE L1 5580 5922 -1886 395 213 44 134 chrX 49770847 49771167 -127202973 + L1ME4a LINE L1 5831 6121 0 872 266 46 35 chrX 49771812 49772158 -127201982 - L1ME4a LINE L1 -11 6110 5761 207 0 0 0 chrX 49772326 49772349 -127201791 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 212 263 0 0 chrX 49772683 49772721 -127201419 + L2 LINE L2 3254 3291 -22 704 202 56 39 chrX 49773303 49773481 -127200659 + MIR SINE MIR 26 206 -56 228 135 0 0 chrX 49773484 49773521 -127200619 + (TA)n Simple_repeat Simple_repeat 1 37 0 2161 151 0 0 chrX 49773758 49774070 -127200070 + AluSx SINE Alu 1 312 0 237 282 118 9 chrX 49774279 49774389 -127199751 + MIR SINE MIR 25 146 -62 210 313 0 15 chrX 49775442 49775509 -127198631 + GA-rich Low_complexity Low_complexity 1 66 0 288 200 30 65 chrX 49775552 49775664 -127198476 + MIR SINE MIR 50 150 -69 211 294 98 54 chrX 49777118 49777210 -127196930 + L2 LINE L2 3133 3228 -44 197 309 0 0 chrX 49777235 49777277 -127196863 - L3 LINE CR1 -10 1567 1526 * 247 263 118 0 chrX 49777244 49777320 -127196820 - MIR3 SINE MIR -22 186 102 6655 94 17 1 chrX 49777371 49777696 -127196444 - L1PA10 LINE L1 -14 6154 5836 315 0 0 0 chrX 49777696 49777731 -127196409 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 6655 94 17 1 chrX 49777731 49779140 -127195000 - L1PA10 LINE L1 -332 5836 4388 316 264 55 0 chrX 49779328 49779419 -127194721 - MIR SINE MIR -63 145 50 299 352 83 7 chrX 49780157 49780302 -127193838 - MIR3 SINE MIR -33 175 20 300 27 0 0 chrX 49780500 49780537 -127193603 + (CA)n Simple_repeat Simple_repeat 2 38 0 382 239 23 0 chrX 49780865 49780953 -127193187 + MIR SINE MIR 84 173 -89 236 271 12 24 chrX 49781376 49781461 -127192679 + L2 LINE L2 3230 3313 0 180 391 0 0 chrX 49781664 49781728 -127192412 - L2 LINE L2 -691 2623 2560 194 336 142 18 chrX 49782308 49782421 -127191719 - L2 LINE L2 -4 3268 3142 939 222 51 21 chrX 49782425 49782659 -127191481 - MLT1G LTR MaLR -8 582 342 270 0 0 0 chrX 49783021 49783051 -127191089 + (TG)n Simple_repeat Simple_repeat 1 30 0 6732 84 10 11 chrX 49783425 49785249 -127188891 + L1PA13 LINE L1 4314 6144 -19 640 115 21 0 chrX 49785249 49785345 -127188795 + Tigger1 DNA MER2_type 2141 2238 -180 1045 217 26 90 chrX 49785425 49785784 -127188356 - L1ME2 LINE L1 0 6170 5837 1388 209 40 7 chrX 49785786 49786063 -127188077 - MLT1E LTR MaLR -2 591 306 571 24 0 36 chrX 49786169 49786252 -127187888 + (TCTCCC)n Simple_repeat Simple_repeat 5 84 0 9924 75 11 12 chrX 49786252 49787581 -127186559 + SVA Other Other 57 1383 -3 23 33 0 0 chrX 49787581 49787611 -127186529 + AT_rich Low_complexity Low_complexity 1 30 0 530 260 55 28 chrX 49787617 49787798 -127186342 - MIR SINE MIR -49 213 28 264 228 0 0 chrX 49787810 49787867 -127186273 + MER113 DNA MER1_type? 1 57 -464 350 189 0 54 chrX 49787964 49788038 -127186102 + MER113 DNA MER1_type? 452 521 0 416 279 45 19 chrX 49788054 49788208 -127185932 + MIR3 SINE MIR 38 195 -13 240 312 129 0 chrX 49789179 49789272 -127184868 - MIR SINE MIR -157 105 1 203 298 18 0 chrX 49789345 49789402 -127184738 + L2 LINE L2 3010 3067 -246 528 285 42 26 chrX 49789459 49789652 -127184488 - MIR3 SINE MIR -3 205 10 206 223 0 128 chrX 49789834 49789928 -127184212 - MIR SINE MIR -107 101 20 205 200 50 0 chrX 49789928 49789988 -127184152 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 471 302 66 16 chrX 49791339 49791521 -127182619 + L3 LINE CR1 1296 1486 -91 187 238 24 0 chrX 49792039 49792081 -127182059 - L2 LINE L2 -10 3303 3261 198 0 0 0 chrX 49792220 49792242 -127181898 + (CA)n Simple_repeat Simple_repeat 2 23 0 636 297 55 41 chrX 49792244 49792611 -127181529 - L1MC4 LINE L1 -143 7899 7528 686 332 40 7 chrX 49792620 49792941 -127181199 + L2 LINE L2 2697 3037 -276 432 273 16 50 chrX 49792941 49793118 -127181022 + MLT1H1 LTR MaLR 3 173 -382 194 195 0 0 chrX 49793128 49793169 -127180971 + MIR SINE MIR 214 254 -8 428 217 21 153 chrX 49793176 49793411 -127180729 + MLT1H1 LTR MaLR 173 376 -214 613 209 25 43 chrX 49793419 49793574 -127180566 + L2 LINE L2 3110 3261 -52 543 240 169 0 chrX 49793574 49793728 -127180412 - MER5A DNA MER1_type 0 189 10 498 181 11 11 chrX 49793811 49793905 -127180235 + Charlie8 DNA MER1_type 132 225 -2192 356 267 0 0 chrX 49794177 49794252 -127179888 - MER5A DNA MER1_type -111 78 4 249 204 74 0 chrX 49794257 49794311 -127179829 + L2 LINE L2 3256 3313 0 * 448 311 66 13 chrX 49794309 49794460 -127179680 - MIR SINE MIR -73 189 31 19757 49 2 0 chrX 49794609 49797870 -127176270 - L1PA5 LINE L1 -3 6151 2887 1988 159 3 0 chrX 49797993 49798288 -127175852 + AluSx SINE Alu 1 296 -16 2592 104 3 3 chrX 49798335 49798699 -127175441 + THE1B LTR MaLR 1 364 0 435 286 43 38 chrX 49799256 49799441 -127174699 + MER5A DNA MER1_type 3 188 -1 196 371 0 0 chrX 49800031 49800101 -127174039 - L2 LINE L2 -9 3263 3194 390 169 0 0 chrX 49800132 49800209 -127173931 + L1 LINE L1 4780 4856 -1290 2269 128 12 2 chrX 49800215 49800618 -127173522 + L1P4 LINE L1 5221 5627 -541 602 277 23 17 chrX 49800907 49801084 -127173056 + MER5B DNA MER1_type 1 178 0 706 220 26 21 chrX 49801129 49801320 -127172820 - MER106A DNA MER1_type -44 192 1 334 200 15 0 chrX 49801337 49801402 -127172738 + MER5A DNA MER1_type 44 109 -80 1502 338 62 12 chrX 49801527 49802250 -127171890 - L3 LINE CR1 -1 1576 818 1758 142 7 14 chrX 49802269 49802550 -127171590 - AluJo SINE Alu -21 291 13 817 249 96 25 chrX 49802656 49803105 -127171035 + L1ME4a LINE L1 5484 5964 -157 250 218 0 23 chrX 49803125 49803212 -127170928 + L1MC4 LINE L1 6614 6698 -1344 2103 127 27 14 chrX 49803291 49803660 -127170480 - L1MA3 LINE L1 0 6305 5932 1271 178 0 5 chrX 49804135 49804371 -127169769 - AluJo SINE Alu 0 318 84 380 353 42 12 chrX 49804389 49804556 -127169584 - MIR SINE MIR -59 203 32 299 113 0 38 chrX 49804838 49804891 -127169249 + L1ME LINE L1 5623 5673 -448 180 77 0 0 chrX 49806663 49806689 -127167451 + (A)n Simple_repeat Simple_repeat 1 26 0 9369 183 7 17 chrX 49806772 49807101 -127167039 + L1PB1 LINE L1 2968 3299 -2852 2207 128 0 0 chrX 49807101 49807405 -127166735 + AluSg SINE Alu 1 304 -6 9369 183 7 17 chrX 49807405 49807621 -127166519 + L1PB1 LINE L1 3299 3516 -2635 2215 84 0 7 chrX 49807621 49807947 -127166193 + AluY SINE Alu 1 324 0 9369 183 7 17 chrX 49807947 49809007 -127165133 + L1PB1 LINE L1 3516 4585 -1566 2030 135 29 22 chrX 49809007 49809318 -127164822 + AluSq SINE Alu 1 313 0 9369 183 7 17 chrX 49809318 49810927 -127163213 + L1PB1 LINE L1 4585 6149 -2 2872 275 124 34 chrX 49811023 49811866 -127162274 + L1MB5 LINE L1 1 994 -5865 2004 98 11 0 chrX 49811866 49812131 -127162009 + AluSg1 SINE Alu 25 292 -17 2872 275 124 34 chrX 49812131 49812536 -127161604 + L1MB5 LINE L1 994 1361 -5498 800 142 89 18 chrX 49812541 49812710 -127161430 + MER30B DNA MER1_type 6 186 -4 180 0 0 0 chrX 49812785 49812805 -127161335 + (TAAAAA)n Simple_repeat Simple_repeat 1 20 0 1671 295 58 22 chrX 49812816 49813036 -127161104 + L1MB5 LINE L1 1376 1587 -5551 2114 196 35 7 chrX 49813036 49813500 -127160640 + L1PB4 LINE L1 5678 6154 -2 1671 295 58 22 chrX 49813500 49814280 -127159860 + L1MB5 LINE L1 1587 2564 -4574 307 290 101 43 chrX 49814457 49814664 -127159476 + L1MB5 LINE L1 2592 2810 -4328 25 0 0 0 chrX 49814692 49814717 -127159423 + AT_rich Low_complexity Low_complexity 1 25 0 1739 236 5 5 chrX 49814975 49815344 -127158796 + L1PA15 LINE L1 1 369 -6418 7617 214 15 25 chrX 49815348 49817765 -127156375 + L1PA15 LINE L1 2309 4805 -2011 2439 110 8 31 chrX 49817765 49818148 -127155992 + THE1C LTR MaLR 2 375 0 7617 214 15 25 chrX 49818148 49820140 -127154000 + L1PA15 LINE L1 4805 6816 0 2469 224 49 133 chrX 49820141 49820675 -127153465 + L1MB5 LINE L1 2877 3454 -3503 1960 145 7 3 chrX 49820675 49820964 -127153176 - AluSx SINE Alu -18 294 5 2469 224 49 133 chrX 49820964 49821399 -127152741 + L1MB5 LINE L1 3454 3924 -3033 824 222 52 0 chrX 49821399 49821593 -127152547 + MLT1B LTR MaLR 187 390 0 2469 224 49 133 chrX 49821593 49822155 -127151985 + L1MB5 LINE L1 3924 4386 -2571 1932 130 3 77 chrX 49822155 49822479 -127151661 + AluSx SINE Alu 1 300 -12 2469 224 49 133 chrX 49822479 49822681 -127151459 + L1MB5 LINE L1 4386 4603 -2354 * 22941 46 1 0 chrX 49822678 49825678 -127148462 - L1PA3 LINE L1 -2327 3819 819 13007 34 0 0 chrX 49825678 49828010 -127146130 + L1PA3 LINE L1 3821 6152 -3 4927 177 58 4 chrX 49828063 49829207 -127144933 + Tigger3b DNA MER2_type 1 1231 0 241 251 145 63 chrX 49829238 49829445 -127144695 + LTR10A LTR ERV1 12 235 -374 1570 148 59 73 chrX 49829447 49829819 -127144321 + LTR10A LTR ERV1 181 547 -62 617 248 84 95 chrX 49829829 49830555 -127143585 + LTR10A-int LTR ERV1 1 718 -5931 7207 102 56 43 chrX 49830744 49832924 -127141216 + LTR10A-int LTR ERV1 718 2972 -3924 5215 252 15 24 chrX 49833002 49834505 -127139635 + LTR10A-int LTR ERV1 5156 6645 -4 1665 157 194 50 chrX 49834508 49834987 -127139153 + LTR10A LTR ERV1 1 548 -61 286 185 48 82 chrX 49835030 49835176 -127138964 + L1MB5 LINE L1 4694 4834 -2123 292 114 0 0 chrX 49835189 49835233 -127138907 + Alu SINE Alu 246 289 -13 11321 234 28 23 chrX 49835245 49835619 -127138521 + L1PA11 LINE L1 7 378 -7206 4289 105 28 31 chrX 49835619 49836265 -127137875 + LTR9B LTR ERV1 1 644 0 11321 234 28 23 chrX 49836265 49840641 -127133499 + L1PA11 LINE L1 378 5299 -2285 14285 190 31 12 chrX 49840643 49842497 -127131643 + L1PB1 LINE L1 1 1818 -5062 2327 93 0 3 chrX 49842497 49842798 -127131342 - AluY SINE Alu -11 300 1 14285 190 31 12 chrX 49842798 49844511 -127129629 + L1PB1 LINE L1 1818 3496 -3384 243 0 0 0 chrX 49844511 49844538 -127129602 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 14285 190 31 12 chrX 49844538 49847642 -127126498 + L1PB1 LINE L1 3496 6880 0 9006 161 19 19 chrX 49847648 49849952 -127124188 + L1PA11 LINE L1 5297 7610 -2 3968 217 71 35 chrX 49849952 49851085 -127123055 + L1MB5 LINE L1 4829 6001 -956 806 265 0 0 chrX 49851085 49851251 -127122889 + FRAM SINE Alu 1 159 -17 4302 193 20 33 chrX 49851253 49851378 -127122762 + L1MB5 LINE L1 6007 6132 -853 1525 189 20 20 chrX 49851378 49851675 -127122465 + AluSx SINE Alu 1 297 -15 4302 193 20 33 chrX 49851675 49852454 -127121686 + L1MB5 LINE L1 6132 6896 -89 1816 171 4 0 chrX 49852454 49852758 -127121382 - AluJb SINE Alu 0 305 1 4302 193 20 33 chrX 49852758 49852847 -127121293 + L1MB5 LINE L1 6896 6985 0 327 146 0 0 chrX 49853046 49853101 -127121039 + (TA)n Simple_repeat Simple_repeat 2 56 0 471 18 0 0 chrX 49853101 49853157 -127120983 + (GA)n Simple_repeat Simple_repeat 2 57 0 338 218 48 68 chrX 49853158 49853305 -127120835 + L1M4c LINE L1 1698 1841 -4543 510 255 10 49 chrX 49853381 49853585 -127120555 + L1M4c LINE L1 2025 2220 -4164 * 1147 140 70 48 chrX 49853579 49853665 -127120475 + L1M4 LINE L1 5530 5613 -571 2420 57 7 3 chrX 49853665 49853963 -127120177 + AluY SINE Alu 1 299 -12 1147 140 70 48 chrX 49853963 49854104 -127120036 + L1M4 LINE L1 5613 5762 -422 412 317 67 43 chrX 49854822 49855213 -127118927 - L1ME4a LINE L1 -239 5882 5483 945 158 0 0 chrX 49855346 49855485 -127118655 + FRAM SINE Alu 20 158 -18 485 262 8 0 chrX 49855547 49855669 -127118471 + MIR SINE MIR 140 262 0 2013 110 43 0 chrX 49855686 49855968 -127118172 - AluSq SINE Alu -19 294 1 1710 188 7 7 chrX 49856760 49857068 -127117072 - AluJo SINE Alu -4 308 1 252 227 200 0 chrX 49857906 49857981 -127116159 - MIR SINE MIR -121 141 52 344 280 40 0 chrX 49858558 49858658 -127115482 + MIR SINE MIR 34 137 -71 2190 104 0 10 chrX 49858965 49859262 -127114878 - AluSg SINE Alu -16 294 1 207 211 0 0 chrX 49859985 49860023 -127114117 - MIR SINE MIR -90 118 81 236 318 159 28 chrX 49860032 49860139 -127114001 - L2 LINE L2 -9 3263 3143 904 364 78 9 chrX 49860614 49861226 -127112914 + L2 LINE L2 2374 3029 -243 899 147 6 0 chrX 49861279 49861436 -127112704 - THE1C-int LTR MaLR -1491 160 3 1783 166 67 33 chrX 49861437 49861798 -127112342 - THE1C LTR MaLR 0 375 3 2776 151 5 45 chrX 49861801 49862009 -127112131 + L1 LINE L1 4121 4336 -1810 896 131 0 51 chrX 49862009 49862146 -127111994 - FLAM_C SINE Alu -3 130 1 2776 151 5 45 chrX 49862146 49862214 -127111926 + L1 LINE L1 4336 4405 -1741 2019 133 0 0 chrX 49862214 49862534 -127111606 + AluSc SINE Alu 1 320 0 2776 151 5 45 chrX 49862534 49862808 -127111332 + L1 LINE L1 4405 4653 -1493 2570 108 25 0 chrX 49862803 49863165 -127110975 + THE1A-int LTR MaLR 1210 1580 0 * 2630 106 17 0 chrX 49863165 49863514 -127110626 + THE1A LTR MaLR 1 355 0 1768 255 27 8 chrX 49863514 49864035 -127110105 - HERVL-B3 LTR ERVL -5123 531 1 3342 165 7 55 chrX 49864035 49864616 -127109524 - MLT2B3 LTR ERVL 0 554 2 1604 179 69 0 chrX 49864664 49864954 -127109186 + AluJb SINE Alu 1 310 -2 21 0 0 0 chrX 49864979 49865000 -127109140 + AT_rich Low_complexity Low_complexity 1 21 0 1447 289 85 16 chrX 49865097 49865929 -127108211 + L1M4 LINE L1 2237 3126 -3020 352 345 101 4 chrX 49865940 49866178 -127107962 - L1ME LINE L1 -563 5601 5341 2116 107 17 7 chrX 49866298 49866614 -127107526 - AluSx SINE Alu 0 312 1 258 404 54 0 chrX 49866636 49866802 -127107338 - L3 LINE CR1 -348 1229 1055 605 321 56 16 chrX 49867032 49867284 -127106856 + MIR SINE MIR 1 262 0 264 286 39 13 chrX 49867349 49867426 -127106714 + MIR SINE MIR 17 95 -167 21342 131 13 17 chrX 49867470 49870879 -127103261 + L1PA6 LINE L1 11 3404 -2742 335 71 0 0 chrX 49870867 49870909 -127103231 - L1PA3 LINE L1 -588 5567 5526 * 5153 35 5 0 chrX 49870909 49871462 -127102678 + L1PA3 LINE L1 5564 6132 -19 221 56 0 28 chrX 49871462 49871498 -127102642 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 15969 71 8 0 chrX 49871498 49874271 -127099869 + L1PA6 LINE L1 3379 6154 0 428 284 40 54 chrX 49875036 49875184 -127098956 + MIR3 SINE MIR 58 203 -5 361 262 43 92 chrX 49875785 49875926 -127098214 - MIR3 SINE MIR -67 141 8 1972 47 0 4 chrX 49876269 49876503 -127097637 + AluY SINE Alu 70 302 -9 374 286 0 0 chrX 49876858 49876963 -127097177 - MIR SINE MIR 0 262 158 238 231 0 31 chrX 49876963 49877028 -127097112 + HsTC2 DNA Tc2 7 69 -1829 2034 197 8 6 chrX 49877064 49877425 -127096715 - MLT1A1 LTR MaLR -3 362 1 320 255 35 138 chrX 49877463 49877608 -127096532 + L2 LINE L2 3143 3272 0 371 293 19 9 chrX 49878157 49878263 -127095877 - MER5B DNA MER1_type -70 108 2 198 128 0 0 chrX 49878290 49878329 -127095811 + (TC)n Simple_repeat Simple_repeat 2 40 0 765 170 0 0 chrX 49878338 49878450 -127095690 - FLAM_C SINE Alu -30 113 2 244 293 0 13 chrX 49878637 49878712 -127095428 + GA-rich Low_complexity Low_complexity 1 74 0 206 281 0 35 chrX 49878793 49878850 -127095290 - MIR SINE MIR -77 131 77 535 326 37 18 chrX 49879228 49879446 -127094694 + MIR SINE MIR 2 223 -39 184 355 21 32 chrX 49879468 49879561 -127094579 - L2 LINE L2 -94 3178 3087 969 278 0 16 chrX 49879585 49879840 -127094300 + L2 LINE L2 2543 2793 -521 628 242 121 0 chrX 49879833 49879990 -127094150 + MIR SINE MIR 11 186 -76 * 369 331 64 61 chrX 49880062 49880455 -127093685 + L2 LINE L2 2844 3237 -76 212 200 0 0 chrX 49880452 49880502 -127093638 - L2 LINE L2 -167 3146 3097 * 338 329 21 7 chrX 49880832 49880975 -127093165 + MIR3 SINE MIR 61 205 -3 217 218 0 126 chrX 49882266 49882353 -127091787 - MIR SINE MIR -70 192 117 279 264 0 0 chrX 49882446 49882518 -127091622 - MIR SINE MIR 0 262 191 2490 81 0 7 chrX 49882773 49883083 -127091057 + AluSc SINE Alu 2 309 0 224 321 68 68 chrX 49883487 49883739 -127090401 + L2 LINE L2 2373 2624 -690 256 305 42 11 chrX 49884035 49884130 -127090010 - L2 LINE L2 -223 3049 2952 5121 11 0 0 chrX 49884529 49885068 -127089072 - L1PA3 LINE L1 0 6155 5617 9674 26 5 0 chrX 49885068 49886433 -127087707 + L1PA3 LINE L1 4259 5627 -528 3820 145 47 34 chrX 49886537 49887239 -127086901 + MER50 LTR ERV1 1 711 -23 317 289 47 23 chrX 49888977 49889105 -127085035 + MIR SINE MIR 113 243 -19 208 135 0 0 chrX 49889266 49889303 -127084837 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 1213 122 16 0 chrX 49889780 49889969 -127084171 + L1PA11 LINE L1 4 195 -6668 2345 143 55 30 chrX 49890005 49890444 -127083696 + L1PA11 LINE L1 710 1159 -5704 1497 124 15 13 chrX 49890438 49890703 -127083437 + L1PA11 LINE L1 4128 5800 -1062 * 696 46 0 0 chrX 49890703 49890790 -127083350 + L1PA4 LINE L1 6066 6152 -3 6669 92 15 31 chrX 49890799 49891880 -127082260 + L1PA11 LINE L1 5822 6890 0 464 287 0 73 chrX 49891886 49892147 -127081993 - L1P LINE L1 -1053 5093 4852 364 248 83 41 chrX 49892153 49892298 -127081842 + L2 LINE L2 3158 3308 -5 252 299 0 0 chrX 49892511 49892578 -127081562 - MIR SINE MIR -13 249 183 5381 174 28 12 chrX 49893052 49894761 -127079379 - L1MB3 LINE L1 0 6183 4453 2127 122 0 44 chrX 49894761 49895082 -127079058 - AluSx SINE Alu -5 307 1 5381 174 28 12 chrX 49895082 49895152 -127078988 - L1MB3 LINE L1 -1730 4453 4386 292 306 20 10 chrX 49895281 49895379 -127078761 + MIR SINE MIR 52 150 -58 180 314 0 0 chrX 49895554 49895605 -127078535 + L3 LINE CR1 1525 1575 -2 415 291 16 48 chrX 49896138 49896327 -127077813 - L1ME3A LINE L1 -26 6144 5962 390 340 70 37 chrX 49896410 49896654 -127077486 + MIR SINE MIR 11 262 0 877 222 0 0 chrX 49897929 49898091 -127076049 + FRAM SINE Alu 1 161 -15 292 268 0 14 chrX 49898101 49898172 -127075968 + MIR SINE MIR 33 102 -160 313 341 120 18 chrX 49898315 49898628 -127075512 - L2 LINE L2 -220 3052 2695 249 325 13 40 chrX 49900172 49900323 -127073817 + (CA)n Simple_repeat Simple_repeat 1 147 0 354 293 158 23 chrX 49900954 49901169 -127072971 - L3b LINE CR1 -136 1447 1204 310 354 95 49 chrX 49902365 49902775 -127071365 - L2 LINE L2 -16 3256 2828 210 213 64 0 chrX 49902841 49902888 -127071252 - L2 LINE L2 -556 2758 2709 2361 171 49 74 chrX 49904039 49904553 -127069587 + MLT1D LTR MaLR 5 505 0 13227 89 6 11 chrX 49905494 49911591 -127062549 + L1PA6 LINE L1 11 6154 0 337 262 84 0 chrX 49911592 49911699 -127062441 + MER103 DNA DNA 42 157 -9 182 244 22 0 chrX 49911803 49911848 -127062292 + L3 LINE CR1 1278 1323 -254 202 343 0 0 chrX 49911975 49912045 -127062095 - L3b LINE CR1 -346 1237 1168 201 175 19 68 chrX 49912377 49912480 -127061660 + T-rich Low_complexity Low_complexity 1 98 0 2653 68 31 0 chrX 49912488 49912810 -127061330 - L1PA7 LINE L1 -6 6148 5817 * 7568 61 0 9 chrX 49912809 49913756 -127060384 + L1PA5 LINE L1 5215 6153 -1 12013 205 31 10 chrX 49914702 49917510 -127056630 - L1PA13 LINE L1 -3915 2882 3 199 311 66 0 chrX 49917896 49917957 -127056183 + MIR SINE MIR 91 155 -107 889 235 22 0 chrX 49917959 49918142 -127055998 - MER5A DNA MER1_type 0 189 3 185 291 51 13 chrX 49919058 49919137 -127055003 + L3 LINE CR1 1494 1575 -2 21 0 0 0 chrX 49919139 49919160 -127054980 + AT_rich Low_complexity Low_complexity 1 21 0 2261 261 101 58 chrX 49919356 49920334 -127053806 + L2 LINE L2 1786 2805 -509 301 68 0 34 chrX 49920346 49920405 -127053735 + (TTTTTG)n Simple_repeat Simple_repeat 5 61 0 1338 57 0 0 chrX 49920412 49920570 -127053570 - AluY SINE Alu -24 287 130 623 305 88 63 chrX 49920592 49921035 -127053105 + L2 LINE L2 2859 3312 -1 22 35 0 0 chrX 49921393 49921422 -127052718 + AT_rich Low_complexity Low_complexity 1 29 0 4774 19 0 0 chrX 49923060 49923577 -127050563 + L1PA2 LINE L1 5639 6155 0 8108 29 1 0 chrX 49923586 49924563 -127049577 + L1PA3 LINE L1 5175 6152 -3 4075 136 43 0 chrX 49924563 49925174 -127048966 + THE1-int LTR MaLR 428 1064 -516 2362 139 19 27 chrX 49925192 49925559 -127048581 - THE1B LTR MaLR 0 364 1 294 299 44 88 chrX 49925740 49925877 -127048263 + L2 LINE L2 3137 3267 -5 2081 151 101 89 chrX 49926115 49926619 -127047521 - MLT2B1 LTR ERVL 0 520 11 34169 36 1 1 chrX 49926722 49931598 -127042542 + L1PA3 LINE L1 1283 6155 0 440 171 0 26 chrX 49932365 49932441 -127041699 - AluJo SINE Alu -101 211 138 758 200 0 8 chrX 49932478 49932608 -127041532 - AluJo SINE Alu -178 134 6 1537 162 18 128 chrX 49932809 49933198 -127040942 - MER7A DNA MER2_type -2 344 1 668 196 11 95 chrX 49933533 49933712 -127040428 + MER103 DNA DNA 2 165 -1 247 288 113 0 chrX 49933944 49934024 -127040116 - MIR SINE MIR -88 174 86 327 95 68 81 chrX 49935027 49935101 -127039039 + MLT1D LTR MaLR 1 73 -432 1109 254 169 16 chrX 49935138 49935571 -127038569 + MER101B LTR ERV1 33 531 -39 1614 161 75 42 chrX 49935619 49935954 -127038186 + MLT1D LTR MaLR 69 414 -91 1309 269 18 41 chrX 49935954 49936296 -127037844 - L1M3b LINE L1 -5701 580 247 845 230 36 5 chrX 49936300 49936522 -127037618 + L1M3b LINE L1 1273 1501 -4780 632 292 4 52 chrX 49936520 49936770 -127037370 - L1M3b LINE L1 -6036 245 8 * 466 260 49 79 chrX 50137814 50138043 -126836097 + MIR3 SINE MIR 1 220 -42 402 308 157 20 chrX 50138293 50138491 -126835649 - MIR SINE MIR -19 243 19 4512 165 25 60 chrX 50139128 50140081 -126834059 + L1MB8 LINE L1 5259 6178 0 318 268 31 11 chrX 50143210 50143317 -126830823 + MIR SINE MIR 65 150 -58 448 291 14 14 chrX 50143921 50144062 -126830078 + MIR SINE MIR 48 188 -74 220 196 65 0 chrX 50144942 50144988 -126829152 - MIR SINE MIR -96 166 118 277 275 84 54 chrX 50148531 50148698 -126825442 + MIR3 SINE MIR 33 204 -4 313 331 39 16 chrX 50149235 50149362 -126824778 - MIR SINE MIR -113 149 20 396 309 47 26 chrX 50149985 50150176 -126823964 + MIR SINE MIR 53 247 -15 308 320 80 8 chrX 50150663 50150788 -126823352 + L2 LINE L2 3134 3267 -5 1687 177 30 0 chrX 50151001 50151272 -126822868 + AluSx SINE Alu 1 279 -33 377 305 18 43 chrX 50151297 50151461 -126822679 + MIR SINE MIR 55 214 -48 836 209 0 6 chrX 50152361 50152533 -126821607 + L1P LINE L1 3299 3469 -2677 605 296 43 31 chrX 50153497 50153754 -126820386 - MIR SINE MIR 0 262 3 202 310 181 60 chrX 50153887 50154003 -126820137 - L3 LINE CR1 -22 1555 1426 406 277 179 36 chrX 50154056 50154251 -126819889 - MIR SINE MIR -6 256 34 744 270 147 0 chrX 50154354 50154586 -126819554 - MER102b DNA MER1_type -1089 339 64 459 52 0 0 chrX 50154586 50154644 -126819496 + (CA)n Simple_repeat Simple_repeat 2 59 0 744 270 147 0 chrX 50154644 50154670 -126819470 - MER102b DNA MER1_type -1364 64 43 2015 116 36 10 chrX 50154730 50154852 -126819288 + AluSq SINE Alu 1 118 -195 233 29 29 0 chrX 50154852 50154886 -126819254 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2015 116 36 10 chrX 50154886 50155065 -126819075 + AluSq SINE Alu 118 310 -3 244 266 139 70 chrX 50155067 50155225 -126818915 - L3 LINE CR1 -200 1377 1209 207 333 14 0 chrX 50155257 50155326 -126818814 - L3 LINE CR1 -495 1082 1013 786 185 40 65 chrX 50155340 50155540 -126818600 + MER2 DNA MER2_type 6 200 -145 218 246 29 29 chrX 50155659 50155728 -126818412 - L3 LINE CR1 -568 1009 941 197 275 29 43 chrX 50155732 50155801 -126818339 - L2 LINE L2 -2 3311 3244 324 330 39 10 chrX 50157752 50157855 -126816285 + MIR3 SINE MIR 8 113 -95 896 276 14 0 chrX 50157976 50158193 -126815947 + MIR SINE MIR 8 227 -35 535 277 230 14 chrX 50158525 50158738 -126815402 + MIR SINE MIR 4 262 0 462 291 8 0 chrX 50158856 50158990 -126815150 + MIR3 SINE MIR 65 199 -9 394 344 0 55 chrX 50159273 50159456 -126814684 + MIR3 SINE MIR 13 185 -23 1885 250 81 65 chrX 50159508 50160497 -126813643 + L2 LINE L2 2308 3310 -3 260 298 81 8 chrX 50160701 50160825 -126813315 + MIR SINE MIR 22 154 -108 282 230 32 127 chrX 50161927 50162053 -126812087 + L2 LINE L2 3153 3266 -6 1820 136 0 0 chrX 50162083 50162340 -126811800 - AluSq SINE Alu -56 257 1 4745 174 37 34 chrX 50163084 50164977 -126809163 + L1MB8 LINE L1 4282 6173 -5 230 75 50 0 chrX 50165837 50165877 -126808263 + (CAGAGA)n Simple_repeat Simple_repeat 4 45 0 207 0 0 0 chrX 50165969 50165992 -126808148 + (A)n Simple_repeat Simple_repeat 1 23 0 492 86 0 0 chrX 50170427 50170497 -126803643 + (CCG)n Simple_repeat Simple_repeat 2 71 0 664 48 0 29 chrX 50171574 50171677 -126802463 + (CTG)n Simple_repeat Simple_repeat 3 102 0 206 163 23 0 chrX 50172212 50172255 -126801885 + T-rich Low_complexity Low_complexity 2 45 0 304 348 0 0 chrX 50172528 50172663 -126801477 + G-rich Low_complexity Low_complexity 1 135 0 228 182 0 0 chrX 50173047 50173091 -126801049 + C-rich Low_complexity Low_complexity 4 47 0 296 318 95 50 chrX 50175420 50175599 -126798541 + L2 LINE L2 2518 2704 -610 3029 231 68 33 chrX 50175605 50176885 -126797255 - L1ME1 LINE L1 -7 6159 4835 804 309 113 21 chrX 50176888 50177432 -126796708 + L2 LINE L2 2688 3272 0 499 269 15 30 chrX 50177577 50177711 -126796429 - L2 LINE L2 0 3272 3141 264 237 0 70 chrX 50177926 50178040 -126796100 + L2 LINE L2 2639 2744 -570 871 232 40 119 chrX 50178052 50178422 -126795718 - MER102b DNA MER1_type 0 341 1 199 335 37 79 chrX 50178499 50178714 -126795426 + L2 LINE L2 2836 3041 -231 206 200 0 0 chrX 50178946 50178981 -126795159 - L2 LINE L2 -35 3237 3203 2232 110 0 0 chrX 50179033 50179323 -126794817 + AluSg SINE Alu 1 290 -20 421 287 2 9 chrX 50179469 50179594 -126794546 - MIR SINE MIR -41 167 41 227 308 38 50 chrX 50179778 50179937 -126794203 + MIR SINE MIR 57 213 -49 224 264 28 85 chrX 50179970 50180076 -126794064 - MIR SINE MIR -59 203 104 480 275 6 73 chrX 50180774 50180952 -126793188 - MIR SINE MIR -32 230 65 276 213 0 88 chrX 50182034 50182076 -126792064 - MIR SINE MIR -1 261 228 2021 151 0 10 chrX 50182076 50182410 -126791730 - AluSx SINE Alu 0 312 1 276 213 0 88 chrX 50182410 50182447 -126791693 - MIR SINE MIR -34 228 189 828 257 33 14 chrX 50182462 50182672 -126791468 - MIR SINE MIR -37 225 12 431 203 11 170 chrX 50183844 50183963 -126790177 - MIR SINE MIR -108 154 72 741 221 0 0 chrX 50183963 50184094 -126790046 - FLAM_A SINE Alu -2 131 1 431 203 11 170 chrX 50184094 50184156 -126789984 - MIR SINE MIR -190 72 2 236 275 66 11 chrX 50184929 50185020 -126789120 - MLT1K LTR MaLR -323 265 170 230 235 78 69 chrX 50186017 50186119 -126788021 - MIR SINE MIR -42 220 118 369 339 0 8 chrX 50186170 50186294 -126787846 + L2 LINE L2 3191 3313 0 461 250 205 6 chrX 50186389 50186545 -126787595 - MIR SINE MIR -48 214 28 293 356 0 41 chrX 50187213 50187359 -126786781 + L2 LINE L2 2910 3049 -223 250 296 63 63 chrX 50187646 50187751 -126786389 + MIR SINE MIR 4 111 -151 300 111 0 0 chrX 50187751 50187796 -126786344 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 250 296 63 63 chrX 50187796 50187849 -126786291 + MIR SINE MIR 110 162 -100 210 207 35 17 chrX 50187844 50187902 -126786238 + L2 LINE L2 3214 3272 0 * 2527 91 28 3 chrX 50187915 50188276 -126785864 - L1PA11 LINE L1 -2 6172 5803 626 187 42 169 chrX 50188310 50188594 -126785546 + MLT1A1 LTR MaLR 4 251 -114 311 272 81 15 chrX 50188651 50188787 -126785353 - MLT1J1 LTR MaLR -209 237 93 357 367 78 0 chrX 50188913 50189093 -126785047 - L2 LINE L2 -189 3083 2890 306 128 64 0 chrX 50189772 50189866 -126784274 + (TA)n Simple_repeat Simple_repeat 1 100 0 222 218 39 0 chrX 50189986 50190142 -126783998 + (TA)n Simple_repeat Simple_repeat 2 163 0 49 32 0 0 chrX 50190143 50190206 -126783934 + AT_rich Low_complexity Low_complexity 1 63 0 304 224 0 24 chrX 50190206 50190291 -126783849 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 219 69 0 0 chrX 50190711 50190740 -126783400 + (TTAGGG)n Simple_repeat Simple_repeat 1 29 0 191 309 198 19 chrX 50190749 50190911 -126783229 - L2 LINE L2 -417 2897 2707 239 362 61 63 chrX 50190961 50191497 -126782643 + L2 LINE L2 2728 3263 -9 213 39 0 0 chrX 50192255 50192281 -126781859 + (T)n Simple_repeat Simple_repeat 1 26 0 400 260 193 20 chrX 50193173 50193323 -126780817 + MER45A DNA AcHobo 2 177 -1 275 272 184 9 chrX 50194479 50194593 -126779547 + MIR SINE MIR 19 152 -56 4155 92 2 0 chrX 50194615 50195168 -126778972 + MER41A LTR ERV1 1 554 0 273 75 0 0 chrX 50195495 50195535 -126778605 + (TG)n Simple_repeat Simple_repeat 1 40 0 227 188 0 21 chrX 50195535 50195583 -126778557 + GA-rich Low_complexity Low_complexity 2 48 0 347 265 24 12 chrX 50195996 50196079 -126778061 + MIR SINE MIR 57 140 -68 2804 196 40 2 chrX 50196220 50196801 -126777339 - L1 LINE L1 -1801 4345 3743 1547 220 13 0 chrX 50196802 50197188 -126776952 - L1 LINE L1 -2964 3182 2792 * 5462 165 12 16 chrX 50197183 50197265 -126776875 + L1PB1 LINE L1 4320 4401 -1750 666 25 0 0 chrX 50197265 50197345 -126776795 + (CAATA)n Simple_repeat Simple_repeat 2 81 0 5462 165 12 16 chrX 50197345 50199099 -126775041 + L1PB1 LINE L1 4401 6150 -1 20815 119 10 2 chrX 50199230 50202479 -126771661 - L1M LINE L1 -755 5391 2148 7607 77 5 6 chrX 50202517 50204357 -126769783 - L1PA6 LINE L1 0 6154 4316 1912 49 72 0 chrX 50204357 50204617 -126769523 - L1PA4 LINE L1 0 6155 5873 2350 58 7 0 chrX 50204619 50204914 -126769226 - L1PA6 LINE L1 -1866 4280 3984 * 4751 103 3 3 chrX 50204908 50205610 -126768530 + L1PA6 LINE L1 3279 3980 -2166 10633 149 23 57 chrX 50205610 50208092 -126766048 - L1P3 LINE L1 -3984 2477 6 25 51 0 0 chrX 50208092 50208131 -126766009 + AT_rich Low_complexity Low_complexity 1 39 0 385 244 0 0 chrX 50208208 50208294 -126765846 - L1MD2 LINE L1 -79 6280 6195 838 219 112 9 chrX 50208298 50208522 -126765618 - L1MD2 LINE L1 -214 6145 5899 956 189 31 25 chrX 50208522 50208718 -126765422 - MSTB1 LTR MaLR 0 432 236 323 284 50 20 chrX 50208757 50208958 -126765182 + L1MDa LINE L1 2130 2336 -4204 * 808 178 19 13 chrX 50208956 50209113 -126765027 + L1MD2 LINE L1 5746 5903 -456 1324 204 28 60 chrX 50209113 50209431 -126764709 + MSTB1 LTR MaLR 1 308 -124 3240 135 30 7 chrX 50209432 50209994 -126764146 - L1MA4 LINE L1 -68 6232 5658 4446 186 32 26 chrX 50210001 50210063 -126764077 + L1PA16 LINE L1 4356 4416 -1884 2132 142 0 0 chrX 50210063 50210373 -126763767 + AluSx SINE Alu 1 310 -2 4446 186 32 26 chrX 50210373 50211558 -126762582 + L1PA16 LINE L1 4416 5611 -689 2358 254 92 28 chrX 50211556 50212494 -126761646 - L1MDb LINE L1 -4402 2004 1000 * 577 57 0 23 chrX 50212494 50212614 -126761526 - L1PA3 LINE L1 0 6155 6068 2358 254 92 28 chrX 50212614 50212847 -126761293 - L1MDb LINE L1 -5406 1000 783 835 148 106 5 chrX 50213213 50213402 -126760738 - L1MC3 LINE L1 -186 7599 7392 181 204 102 0 chrX 50213726 50213775 -126760365 + MER5C DNA MER1_type 30 83 -241 271 266 114 19 chrX 50214008 50214166 -126759974 + L1ME4a LINE L1 5725 5897 -224 1872 154 19 69 chrX 50214457 50214833 -126759307 + L1PA16 LINE L1 5801 6157 -9 2292 215 79 22 chrX 50215887 50216268 -126757872 - L1MC3 LINE L1 -17 7768 7335 977 200 10 10 chrX 50216268 50216473 -126757667 - L1PB4 LINE L1 -4 6152 5948 2292 215 79 22 chrX 50216473 50216724 -126757416 - L1MC3 LINE L1 -450 7335 7100 504 155 56 0 chrX 50216757 50216918 -126757222 + (TA)n Simple_repeat Simple_repeat 2 171 0 362 144 102 30 chrX 50216968 50217135 -126757005 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 1249 223 110 16 chrX 50217147 50217264 -126756876 + L1MC4a LINE L1 6952 7057 -751 2316 170 35 14 chrX 50217264 50217687 -126756453 + MSTB1 LTR MaLR 1 432 0 1249 223 110 16 chrX 50217687 50217941 -126756199 + L1MC4a LINE L1 7057 7358 -450 985 226 85 11 chrX 50217963 50218246 -126755894 - L1M4 LINE L1 -1886 4260 3957 * 9910 176 20 10 chrX 50218229 50220828 -126753312 - L1MA3 LINE L1 0 6305 3732 840 63 0 0 chrX 50220828 50220939 -126753201 + (TTTC)n Simple_repeat Simple_repeat 2 112 0 1852 140 0 0 chrX 50220940 50221212 -126752928 - AluSg SINE Alu -38 272 1 9910 176 20 10 chrX 50221212 50221362 -126752778 - L1MA3 LINE L1 -2573 3732 3585 1476 178 65 54 chrX 50221362 50221733 -126752407 - THE1C LTR MaLR 0 375 1 9910 176 20 10 chrX 50221733 50222051 -126752089 - L1MA3 LINE L1 -2720 3585 3200 2115 113 3 0 chrX 50222051 50222361 -126751779 - L1PA7 LINE L1 -3 6151 5841 676 111 0 0 chrX 50222362 50222461 -126751679 - L1PA7 LINE L1 -242 5912 5814 42776 51 1 4 chrX 50222487 50228660 -126745480 - L1PA4 LINE L1 -4 6151 1 3941 74 0 4 chrX 50228661 50229187 -126744953 - L1PA7 LINE L1 -324 5830 5307 436 173 71 8 chrX 50229188 50229315 -126744825 - L1MA3 LINE L1 -2938 3208 3074 2073 250 29 19 chrX 50229318 50229998 -126744142 - L1M4 LINE L1 -2145 4001 3315 1545 249 11 29 chrX 50229995 50230063 -126744077 - L1M4 LINE L1 -3149 2997 2929 * 1104 174 0 14 chrX 50230063 50230270 -126743870 - L1PA13 LINE L1 -3 6160 5957 1545 249 11 29 chrX 50230270 50230728 -126743412 - L1M4 LINE L1 -3217 2929 2480 13670 160 12 18 chrX 50230743 50231731 -126742409 + Tigger1 DNA MER2_type 30 1022 -1396 9192 91 5 1 chrX 50231731 50233809 -126740331 - L1PA6 LINE L1 0 6154 4073 13670 160 12 18 chrX 50233809 50235223 -126738917 + Tigger1 DNA MER2_type 1022 2418 0 297 313 10 25 chrX 50235228 50235426 -126738714 - L1M4 LINE L1 -3671 2475 2281 3405 221 47 10 chrX 50235467 50236653 -126737487 - L1MB5 LINE L1 -36 6138 4910 1467 264 37 37 chrX 50236690 50237206 -126736934 - L1M4 LINE L1 -1100 5046 4531 4863 129 38 25 chrX 50237206 50238069 -126736071 + L1PA13 LINE L1 5284 6157 -6 244 200 118 0 chrX 50238105 50238190 -126735950 - L1M4 LINE L1 -1663 4483 4389 277 239 120 21 chrX 50238212 50238226 -126735914 - L1M4 LINE L1 -1736 4410 4399 4043 41 0 0 chrX 50238226 50238717 -126735423 - L1PA4 LINE L1 0 6155 5665 277 239 120 21 chrX 50238717 50238844 -126735296 - L1M4 LINE L1 -1747 4399 4255 2204 148 5 15 chrX 50238860 50239251 -126734889 - L1MA1 LINE L1 0 6302 5916 8991 172 13 5 chrX 50239252 50241571 -126732569 - L1MA1 LINE L1 -450 5852 3513 212 57 0 29 chrX 50241571 50241606 -126732534 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 10794 39 0 0 chrX 50241606 50243671 -126730469 - L1PA3 LINE L1 -24 6131 4066 * 17016 44 1 1 chrX 50243669 50245811 -126728329 + L1PA3 LINE L1 1913 4054 -2092 1538 222 16 9 chrX 50245809 50246255 -126727885 - L1MA1 LINE L1 -2619 3527 3079 * 1445 144 0 0 chrX 50246255 50246463 -126727677 - AluSp SINE Alu -16 297 90 505 243 13 33 chrX 50246476 50246628 -126727512 - L1MA1 LINE L1 -3241 2905 2757 705 88 0 0 chrX 50246634 50246725 -126727415 - AluSp SINE Alu -222 91 1 2745 228 24 9 chrX 50246728 50247403 -126726737 - L1 LINE L1 -3061 4504 3820 3124 125 10 29 chrX 50247403 50247890 -126726250 + LTR12 LTR ERV1 1 478 -236 17557 173 42 50 chrX 50247891 50249278 -126724862 - L1 LINE L1 -3740 3825 2428 1960 109 43 30 chrX 50249278 50249582 -126724558 - AluY SINE Alu -3 308 1 17557 173 42 50 chrX 50249582 50252030 -126722110 - L1 LINE L1 -5137 2428 13 1894 247 57 25 chrX 50252032 50252144 -126721996 - L1MCa LINE L1 -1876 4339 4232 252 59 0 0 chrX 50252144 50252178 -126721962 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1894 247 57 25 chrX 50252178 50252697 -126721443 - L1MCa LINE L1 -1983 4232 3688 293 210 34 8 chrX 50252689 50252808 -126721332 + L1M4 LINE L1 3177 3298 -2848 * 403 284 9 23 chrX 50252833 50253051 -126721089 - L1MCa LINE L1 -2894 3321 3107 2399 198 62 0 chrX 50253058 50253557 -126720583 - L1MB2 LINE L1 -7 6662 6133 1353 96 0 108 chrX 50253558 50253798 -126720342 + AluY SINE Alu 93 306 -5 1807 192 36 22 chrX 50253806 50254432 -126719708 - L1MB2 LINE L1 -515 6154 5519 * 24540 156 10 16 chrX 50254419 50259583 -126714557 - L1PA8A LINE L1 -17 6429 1237 189 74 0 0 chrX 50259583 50259610 -126714530 + (TTG)n Simple_repeat Simple_repeat 1 27 0 24540 156 10 16 chrX 50259610 50260838 -126713302 - L1PA8A LINE L1 -5209 1237 3 1905 224 25 6 chrX 50260833 50261306 -126712834 - L1MB2 LINE L1 -1089 5555 5074 * 3192 257 68 28 chrX 50261319 50261341 -126712799 - L1MB2 LINE L1 -4149 2497 2477 234 0 0 0 chrX 50261341 50261367 -126712773 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3192 257 68 28 chrX 50261367 50263327 -126710813 - L1MB2 LINE L1 -4169 2477 352 325 342 86 59 chrX 50263335 50263639 -126710501 - L1M4c LINE L1 -6042 342 31 1167 242 93 19 chrX 50263650 50264299 -126709841 - L1MCa LINE L1 -3948 2267 1700 868 259 13 53 chrX 50264305 50264490 -126709650 - AluJb SINE Alu -12 290 120 1398 56 0 0 chrX 50264490 50264670 -126709470 + (TTC)n Simple_repeat Simple_repeat 1 180 0 868 259 13 53 chrX 50264670 50264785 -126709355 - AluJb SINE Alu -182 120 2 3817 169 43 4 chrX 50264797 50265589 -126708551 - L1MA4A LINE L1 -12 6291 5469 * 7262 43 0 0 chrX 50265572 50266854 -126707286 - L1PA4 LINE L1 0 6155 4871 4285 45 0 0 chrX 50266872 50267407 -126706733 - L1PA4 LINE L1 -1368 4778 4244 * 7507 53 2 4 chrX 50267403 50268375 -126705765 + L1P LINE L1 3221 4190 -1956 2011 163 13 54 chrX 50268370 50268993 -126705147 - L1MA4A LINE L1 -743 5403 4893 * 2178 252 49 42 chrX 50269009 50270557 -126703583 - L1MCb LINE L1 -4257 2308 305 900 227 45 42 chrX 50270555 50270841 -126703299 - L1MD3 LINE L1 -310 7685 7399 * 766 271 126 13 chrX 50270866 50271183 -126702957 - L1ME1 LINE L1 -55 6111 5759 378 289 42 40 chrX 50271311 50271448 -126702692 - MIR SINE MIR -62 146 14 627 209 120 6 chrX 50271849 50272007 -126702133 - MIR3 SINE MIR 0 208 33 480 188 38 105 chrX 50272780 50272913 -126701227 + MER20 DNA MER1_type 1 124 -95 518 252 0 8 chrX 50273019 50273146 -126700994 - MIR SINE MIR 0 262 137 362 351 6 11 chrX 50273888 50274119 -126700021 + GA-rich Low_complexity Low_complexity 1 229 0 469 313 117 17 chrX 50275180 50275359 -126698781 - MIR SINE MIR -19 243 47 279 200 0 129 chrX 50275470 50275555 -126698585 - MIR3 SINE MIR -2 206 133 5663 129 19 2 chrX 50275616 50276683 -126697457 + L1PA15 LINE L1 5089 6159 -6 416 293 85 18 chrX 50276930 50277094 -126697046 - MIR3 SINE MIR -28 180 6 891 248 34 0 chrX 50277583 50277789 -126696351 - MER58A DNA MER1_type -11 213 1 411 307 7 39 chrX 50277934 50278087 -126696053 - L2 LINE L2 -181 3091 2944 1336 183 38 24 chrX 50278088 50278378 -126695762 - L1MC3 LINE L1 -261 7524 7231 1052 296 61 102 chrX 50278403 50279369 -126694771 - L2 LINE L2 -858 2456 1531 329 322 25 0 chrX 50279471 50279589 -126694551 + GA-rich Low_complexity Low_complexity 1 121 0 299 273 68 0 chrX 50279600 50279688 -126694452 + L3 LINE CR1 1469 1562 -15 276 361 33 0 chrX 50280396 50280518 -126693622 - MIR3 SINE MIR -2 206 81 367 338 32 13 chrX 50280582 50280736 -126693404 + MIR SINE MIR 47 203 -59 343 194 47 108 chrX 50280849 50280978 -126693162 + MER103 DNA DNA 2 122 -44 184 179 0 0 chrX 50281037 50281065 -126693075 + L2 LINE L2 3261 3288 -25 468 51 0 0 chrX 50282062 50282121 -126692019 + (TA)n Simple_repeat Simple_repeat 2 60 0 472 294 31 46 chrX 50282767 50282961 -126691179 + MIR SINE MIR 18 208 -54 244 340 113 0 chrX 50283166 50283263 -126690877 + MIR SINE MIR 38 145 -63 222 308 77 0 chrX 50283577 50283668 -126690472 - MIR SINE MIR -29 233 136 365 331 43 29 chrX 50284151 50284290 -126689850 - MIR SINE MIR -110 152 12 460 386 28 6 chrX 50285088 50285264 -126688876 - MIR3 SINE MIR -8 200 21 285 206 134 21 chrX 50285381 50285478 -126688662 + MIR SINE MIR 108 215 -47 341 351 105 52 chrX 50285570 50285895 -126688245 + L1M4 LINE L1 82 423 -6119 3301 239 42 53 chrX 50285939 50287572 -126686568 + L1M4 LINE L1 492 2127 -4519 2210 170 63 2 chrX 50287572 50287966 -126686174 + MSTB LTR MaLR 1 418 -8 1217 220 45 43 chrX 50288034 50288144 -126685996 + L1M4 LINE L1 2387 2495 -4149 1743 171 23 34 chrX 50288144 50288531 -126685609 + L1MA3 LINE L1 5923 6305 0 1217 220 45 43 chrX 50288531 50289111 -126685029 + L1M4 LINE L1 2495 3079 -3565 183 42 0 0 chrX 50289111 50289135 -126685005 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1217 220 45 43 chrX 50289135 50289154 -126684986 + L1M4 LINE L1 3079 3096 -3548 27438 136 26 60 chrX 50289170 50292941 -126681199 + L1PA7 LINE L1 12 3910 -2244 294 29 0 0 chrX 50292941 50292976 -126681164 + (CAA)n Simple_repeat Simple_repeat 2 36 0 27438 136 26 60 chrX 50292976 50294630 -126679510 + L1PA7 LINE L1 3910 5170 -984 221 0 0 33 chrX 50294630 50294660 -126679480 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 27438 136 26 60 chrX 50294660 50295613 -126678527 + L1PA7 LINE L1 5170 6154 0 3564 273 120 7 chrX 50295601 50297333 -126676807 + L1M4 LINE L1 3081 5008 -1636 * 3779 199 45 29 chrX 50297338 50297805 -126676335 - L1PB4 LINE L1 0 6156 5698 2108 122 7 0 chrX 50297805 50298099 -126676041 - AluSx SINE Alu -16 296 1 3779 199 45 29 chrX 50298099 50298830 -126675310 - L1PB4 LINE L1 -458 5698 4940 3132 213 11 11 chrX 50298944 50299705 -126674435 - L1PB4 LINE L1 -1191 4955 4195 1997 222 20 17 chrX 50299703 50300353 -126673787 + L1M2 LINE L1 3805 4776 -1370 * 1143 197 34 30 chrX 50300365 50300660 -126673480 + L1M2 LINE L1 5319 5614 -698 670 242 6 0 chrX 50300669 50300826 -126673314 - L1MB3 LINE L1 -1797 4349 4192 * 1087 243 3 15 chrX 50300824 50301157 -126672983 + L1MB3 LINE L1 4375 4703 -1443 301 152 33 54 chrX 50301157 50301249 -126672891 + L1MC4 LINE L1 6614 6703 -1339 276 29 0 88 chrX 50301250 50301318 -126672822 + (TA)n Simple_repeat Simple_repeat 2 63 0 301 190 40 40 chrX 50301325 50301425 -126672715 + L1MC4 LINE L1 6604 6703 -1339 671 10 10 102 chrX 50301426 50301623 -126672517 + (TA)n Simple_repeat Simple_repeat 2 180 0 280 73 0 89 chrX 50301650 50301774 -126672366 + (TA)n Simple_repeat Simple_repeat 2 114 0 2482 185 16 14 chrX 50301774 50302443 -126671697 + L1PA4 LINE L1 4710 5386 -765 7242 47 3 0 chrX 50302443 50303918 -126670222 + L1PA4 LINE L1 4678 6155 0 2482 185 16 14 chrX 50303918 50304095 -126670045 + L1PA4 LINE L1 5386 5561 -590 1911 171 25 3 chrX 50304129 50304486 -126669654 + L1PB3 LINE L1 5776 6140 -14 2504 234 42 9 chrX 50304518 50305188 -126668952 + L1MB3 LINE L1 5353 6044 -139 1556 122 4 0 chrX 50305190 50305420 -126668720 + L1PA13 LINE L1 5927 6157 -6 568 126 55 16 chrX 50305420 50305542 -126668598 + L1MB3 LINE L1 6050 6181 -2 34 72 0 0 chrX 50305736 50305805 -126668335 + AT_rich Low_complexity Low_complexity 1 69 0 2181 77 4 0 chrX 50305862 50306136 -126668004 - AluY SINE Alu -15 296 22 462 271 36 18 chrX 50306941 50307107 -126667033 - L1ME LINE L1 -322 5799 5631 4635 110 95 30 chrX 50307122 50307894 -126666246 - LTR12 LTR ERV1 0 826 5 2452 205 34 24 chrX 50307910 50308506 -126665634 - pTR5 LTR ERV1 -1094 1344 743 634 315 31 19 chrX 50308506 50308763 -126665377 + MIR SINE MIR 1 260 -2 315 322 65 29 chrX 50308785 50309030 -126665110 - L1ME LINE L1 -513 5608 5355 282 246 62 45 chrX 50309098 50309377 -126664763 - L1ME4a LINE L1 -45 6076 5758 3258 224 34 68 chrX 50309385 50309767 -126664373 - L1MB7 LINE L1 -7 6177 5784 2315 106 0 3 chrX 50309767 50310079 -126664061 - AluY SINE Alu 0 311 1 3258 224 34 68 chrX 50310079 50310803 -126663337 - L1MB7 LINE L1 -400 5784 5037 406 160 0 0 chrX 50310803 50310878 -126663262 + L1MA3 LINE L1 6228 6302 -3 3258 224 34 68 chrX 50310878 50311536 -126662604 - L1MB7 LINE L1 -1147 5037 4490 1996 137 0 0 chrX 50311536 50311821 -126662319 + AluSx SINE Alu 5 289 -23 3258 224 34 68 chrX 50311821 50312065 -126662075 - L1MB7 LINE L1 -1694 4490 4239 26 0 0 0 chrX 50312065 50312091 -126662049 + AT_rich Low_complexity Low_complexity 1 26 0 957 155 22 11 chrX 50312091 50312272 -126661868 - L1MA3 LINE L1 -5 6300 6118 8095 232 31 13 chrX 50312295 50318027 -126656113 + L1PB2 LINE L1 3 4945 -1917 7362 46 0 1 chrX 50318024 50318963 -126655177 - L1PA4 LINE L1 -2496 3650 2713 * 14257 33 76 0 chrX 50318963 50321391 -126652749 + L1PA4 LINE L1 3652 6145 -10 3941 211 35 6 chrX 50321404 50322846 -126651294 + L1PB2 LINE L1 4932 6405 -462 801 116 8 0 chrX 50322846 50322960 -126651180 + L1PA10 LINE L1 6038 6159 -9 2977 125 8 2 chrX 50322979 50323451 -126650689 + L1PB2 LINE L1 6390 6864 -3 4934 175 12 6 chrX 50323457 50324602 -126649538 - L1MA2 LINE L1 -168 6136 4984 29231 126 24 18 chrX 50324608 50327084 -126647056 - L1PA7 LINE L1 0 6154 3695 279 0 0 0 chrX 50327084 50327115 -126647025 + (TG)n Simple_repeat Simple_repeat 2 32 0 29231 126 24 18 chrX 50327115 50330430 -126643710 - L1PA7 LINE L1 -2459 3695 327 1354 84 0 5 chrX 50330437 50330628 -126643512 - L1P LINE L1 -1248 4898 4709 1147 107 0 0 chrX 50330627 50330795 -126643345 + L1P LINE L1 4527 4694 -1452 * 9972 220 38 5 chrX 50330799 50332723 -126641417 - L1M1 LINE L1 -5561 2004 17 2396 239 59 88 chrX 50332729 50334065 -126640075 - L1MA2 LINE L1 -1881 4265 2970 330 305 94 40 chrX 50334065 50334388 -126639752 - L1M4c LINE L1 -4046 2913 2609 6009 129 16 3 chrX 50334391 50335359 -126638781 - L1MA1 LINE L1 -5 7716 6736 10605 209 20 16 chrX 50335468 50338783 -126635357 - L1MA1 LINE L1 -844 6721 3413 857 98 0 8 chrX 50338786 50338918 -126635222 - L1PA14 LINE L1 0 6161 6031 1055 245 23 39 chrX 50338937 50339370 -126634770 - L1M4c LINE L1 -5040 1815 1390 2276 223 55 42 chrX 50339385 50340009 -126634131 + LTR27 LTR ERV1 3 634 -2 1880 257 75 38 chrX 50340018 50340702 -126633438 - L1M4c LINE L1 -5477 1382 674 748 329 27 7 chrX 50340744 50341188 -126632952 - L1M4c LINE L1 -6324 535 1 * 805 216 20 31 chrX 50341172 50341474 -126632666 - L1M4 LINE L1 -728 5948 5649 1926 249 97 8 chrX 50343628 50344450 -126629690 - L1M4 LINE L1 -974 5670 4776 357 152 57 0 chrX 50344467 50344572 -126629568 + (TA)n Simple_repeat Simple_repeat 1 111 0 816 256 105 28 chrX 50344606 50345315 -126628825 - L1M4 LINE L1 -3593 3051 2284 3195 272 55 33 chrX 50345506 50346702 -126627438 - L1M4 LINE L1 -5042 1500 278 1004 264 47 61 chrX 50346883 50347243 -126626897 - MLT1L LTR MaLR -145 470 116 5825 117 13 11 chrX 50347255 50349128 -126625012 - L1PA14 LINE L1 0 6161 4283 1456 298 33 33 chrX 50349237 50349956 -126624184 + L1MDa LINE L1 1 1111 -5429 829 148 0 32 chrX 50349956 50350111 -126624029 + L1P LINE L1 3632 3781 -2365 * 1448 196 58 35 chrX 50350092 50350384 -126623756 + L1MDa LINE L1 1808 2113 -4427 2160 116 7 0 chrX 50350384 50350678 -126623462 - AluSx SINE Alu -16 296 1 1448 196 58 35 chrX 50350678 50350782 -126623358 + L1MDa LINE L1 2113 2213 -4327 860 246 39 25 chrX 50350777 50351223 -126622917 - L1M4 LINE L1 -3423 2959 2478 * 753 249 109 3 chrX 50351259 50351552 -126622588 - L1M4 LINE L1 -4961 1423 1100 405 303 8 17 chrX 50351553 50351672 -126622468 + MIR SINE MIR 23 140 -122 328 277 68 47 chrX 50351682 50351830 -126622310 + MLT1J LTR MaLR 1 151 -360 264 284 30 0 chrX 50351882 50351949 -126622191 + MLT1J LTR MaLR 239 307 -204 26418 135 34 65 chrX 50351999 50355206 -126618934 - L1PA7 LINE L1 0 6154 3250 6082 104 18 0 chrX 50355206 50356400 -126617740 - L1PA7 LINE L1 -3 6151 4948 26418 135 34 65 chrX 50356400 50359545 -126614595 - L1PA7 LINE L1 -2904 3250 9 387 320 108 5 chrX 50359728 50359922 -126614218 + MIR SINE MIR 49 262 0 1742 239 16 7 chrX 50360169 50360617 -126613523 - Charlie4a DNA MER1_type -18 490 39 348 344 86 7 chrX 50360764 50360915 -126613225 - MIR3 SINE MIR -23 185 23 734 333 79 32 chrX 50361089 50361560 -126612580 + L3 LINE CR1 422 914 -663 1074 311 81 5 chrX 50361624 50362032 -126612108 - MLT1J1 LTR MaLR -4 442 4 1112 294 86 22 chrX 50362092 50362283 -126611857 + L3 LINE CR1 1095 1272 -305 1079 228 20 94 chrX 50362283 50362677 -126611463 + MLT1A1 LTR MaLR 1 365 0 1112 294 86 22 chrX 50362677 50362937 -126611203 + L3 LINE CR1 1272 1575 -2 294 263 251 23 chrX 50363651 50363822 -126610318 - L2 LINE L2 0 3313 3104 * 393 303 224 21 chrX 50363808 50364098 -126610042 - L2 LINE L2 -472 2842 2494 195 286 0 0 chrX 50364174 50364216 -126609924 - L2 LINE L2 -565 2749 2708 1106 278 25 7 chrX 50365754 50366031 -126608109 - MER115 DNA AcHobo -7 686 405 813 220 63 120 chrX 50367070 50367452 -126606688 + MLT1A2 LTR MaLR 15 374 0 21 57 0 0 chrX 50367862 50367897 -126606243 + AT_rich Low_complexity Low_complexity 1 35 0 213 376 40 27 chrX 50367897 50368046 -126606094 + L2 LINE L2 2332 2482 -832 255 303 20 40 chrX 50368195 50368294 -126605846 - MLT1L LTR MaLR -348 267 171 422 296 111 17 chrX 50369264 50369436 -126604704 - L2 LINE L2 0 3313 3126 233 259 0 19 chrX 50369562 50369616 -126604524 + MLT1F1 LTR MaLR 70 122 -420 1648 311 56 43 chrX 50369644 50370267 -126603873 + MER45C DNA AcHobo 30 660 -293 1255 220 29 10 chrX 50370483 50370797 -126603343 + MER45B DNA AcHobo 721 1040 0 1429 240 137 8 chrX 50370802 50371189 -126602951 + MLT1F1 LTR MaLR 129 565 -2 323 296 86 67 chrX 50372464 50372974 -126601166 + L3 LINE CR1 702 1287 -290 481 270 16 48 chrX 50373291 50373480 -126600660 - L1MC4a LINE L1 -1866 5942 5760 277 325 92 0 chrX 50373485 50373605 -126600535 - L2 LINE L2 -560 2754 2624 593 301 72 17 chrX 50374256 50374492 -126599648 - MIR SINE MIR -13 249 1 2507 87 0 0 chrX 50374901 50375210 -126598930 + AluSc SINE Alu 1 309 0 455 292 12 31 chrX 50376529 50376690 -126597450 + MIR SINE MIR 105 262 0 384 303 98 0 chrX 50377064 50377186 -126596954 - MIR3 SINE MIR -61 147 14 2184 188 44 21 chrX 50377928 50378402 -126595738 + MER66B LTR ERV1 1 485 -1 489 194 30 22 chrX 50429229 50429363 -126544777 - L1MA10 LINE L1 -2 6332 6198 2772 245 18 18 chrX 50429403 50430278 -126543862 - L1ME1 LINE L1 -167 5999 5127 390 295 7 43 chrX 50430554 50430693 -126543447 + MIR3 SINE MIR 8 141 -67 2316 96 0 10 chrX 50430730 50431031 -126543109 + AluSx SINE Alu 1 298 -14 365 153 14 0 chrX 50431046 50431118 -126543022 + (TG)n Simple_repeat Simple_repeat 2 74 0 365 247 13 0 chrX 50431124 50431201 -126542939 - L2 LINE L2 -17 3255 3178 4539 153 23 13 chrX 50431735 50432996 -126541144 + L1MA3 LINE L1 4718 5991 -314 3005 196 69 21 chrX 50433100 50433799 -126540341 + L1MC2 LINE L1 5606 6337 -7 230 270 101 0 chrX 50433983 50434072 -126540068 - MIR SINE MIR -47 215 118 281 133 33 0 chrX 50434208 50434268 -126539872 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 234 0 0 0 chrX 50434366 50434392 -126539748 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 3689 220 33 19 chrX 50434826 50436068 -126538072 - L1MB8 LINE L1 -5 6173 4916 868 229 5 25 chrX 50436064 50436265 -126537875 + L1MB8 LINE L1 4748 4944 -1202 * 1217 206 64 58 chrX 50436263 50436763 -126537377 - L1MB8 LINE L1 -2944 3202 2700 6785 56 1 1 chrX 50436888 50437749 -126536391 + L1PA5 LINE L1 5294 6154 0 8969 119 6 15 chrX 50437762 50439187 -126534953 - L1P LINE L1 -1718 4428 3017 626 112 0 0 chrX 50439187 50439285 -126534855 + L1P LINE L1 4423 4520 -1626 11936 58 3 7 chrX 50439386 50441716 -126532424 + L1PA5 LINE L1 3828 6154 0 302 304 59 7 chrX 50441719 50441854 -126532286 + L1M4 LINE L1 2956 3097 -3049 2363 220 39 60 chrX 50442118 50443755 -126530385 + L1MDa LINE L1 1763 3369 -3171 2056 98 13 53 chrX 50443766 50444084 -126530056 - AluSg SINE Alu -4 306 2 397 242 75 19 chrX 50444084 50444245 -126529895 + L1MDa LINE L1 4650 4819 -1721 301 273 0 23 chrX 50444247 50444335 -126529805 + L1MC4 LINE L1 6621 6706 -1336 * 320 311 0 0 chrX 50444276 50444366 -126529774 - L1MC4 LINE L1 -1339 6703 6614 1499 239 81 2 chrX 50444371 50444790 -126529350 + L1MDa LINE L1 4827 5278 -1262 1205 81 0 12 chrX 50444890 50445062 -126529078 + L1PA3 LINE L1 5983 6152 -3 28 0 0 0 chrX 50445062 50445090 -126529050 + AT_rich Low_complexity Low_complexity 1 28 0 3278 141 69 2 chrX 50445090 50445729 -126528411 - L1PBa LINE L1 -4519 2344 1663 1273 258 41 11 chrX 50445848 50446310 -126527830 - L1MDb LINE L1 -1740 4666 4191 190 307 51 80 chrX 50446836 50446973 -126527167 + MIR SINE MIR 80 212 -50 494 327 108 38 chrX 50447062 50447625 -126526515 + L2 LINE L2 2472 3092 -180 2350 201 68 28 chrX 50447774 50448410 -126525730 + L1MDa LINE L1 1328 1988 -4552 464 263 62 6 chrX 50448427 50448587 -126525553 + L1PBa LINE L1 6 174 -6689 589 302 50 70 chrX 50449388 50450235 -126523905 - HAL1 LINE L1 -856 1651 822 266 267 0 0 chrX 50450492 50450567 -126523573 - L1MDb LINE L1 -3381 3025 2951 316 214 0 14 chrX 50450571 50450641 -126523499 - L1MDb LINE L1 -4362 2044 1976 31 88 0 0 chrX 50450684 50450764 -126523376 + AT_rich Low_complexity Low_complexity 1 80 0 3235 140 19 44 chrX 50451205 50451562 -126522578 + HSMAR2 DNA Mariner 719 1057 -245 1977 130 0 7 chrX 50451562 50451846 -126522294 + AluSq SINE Alu 1 282 -31 3235 140 19 44 chrX 50451846 50452080 -126522060 + HSMAR2 DNA Mariner 1057 1295 -7 228 121 0 0 chrX 50452711 50452744 -126521396 - THE1A LTR MaLR 0 355 323 1940 138 21 6 chrX 50452774 50453099 -126521041 - THE1-int LTR MaLR 0 1580 1251 325 210 150 10 chrX 50453201 50453301 -126520839 - L1M4 LINE L1 -1139 5007 4894 5445 112 4 22 chrX 50453302 50454569 -126519571 - L1PA11 LINE L1 0 6174 4875 372 98 0 0 chrX 50454672 50454723 -126519417 - THE1-int LTR MaLR -340 1240 1190 333 29 6 6 chrX 50454723 50454777 -126519363 - THE1A LTR MaLR -310 54 1 287 234 39 0 chrX 50455222 50455299 -126518841 - MER116 DNA Mariner 0 80 1 2037 192 57 7 chrX 50455378 50455784 -126518356 - MSTB LTR MaLR 0 426 1 492 242 18 76 chrX 50456049 50456416 -126517724 - L1MDb LINE L1 -5300 1109 781 290 85 0 21 chrX 50456560 50456607 -126517533 + (GGA)n Simple_repeat Simple_repeat 1 46 0 237 159 0 0 chrX 50456598 50456642 -126517498 + GA-rich Low_complexity Low_complexity 1 44 0 * 1637 297 29 25 chrX 50457162 50457853 -126516287 - L1MCc LINE L1 -4887 1536 653 1031 291 45 50 chrX 50457951 50458333 -126515807 - L1MCc LINE L1 -5813 610 231 961 308 80 45 chrX 50458339 50459282 -126514858 - L1MDa LINE L1 -2485 4055 3080 369 301 97 32 chrX 50459432 50459786 -126514354 - L1MDa LINE L1 -3829 2711 2341 551 295 110 9 chrX 50459864 50460091 -126514049 + MIR SINE MIR 3 252 -10 25 0 0 0 chrX 50460326 50460351 -126513789 + AT_rich Low_complexity Low_complexity 1 25 0 555 224 281 5 chrX 50460758 50460950 -126513190 - MIR SINE MIR 0 262 18 1025 73 0 0 chrX 50461133 50461270 -126512870 - L1P LINE L1 -1593 4553 4417 16693 51 6 1 chrX 50461271 50463405 -126510735 + L1P LINE L1 2285 4428 -1718 3089 272 87 29 chrX 50463403 50465179 -126508961 - L1 LINE L1 -3324 2646 1047 * 1959 135 0 0 chrX 50465179 50465503 -126508637 - AluSg SINE Alu 0 324 1 3089 272 87 29 chrX 50465503 50466342 -126507798 - L1 LINE L1 -4923 1047 258 240 26 0 0 chrX 50466554 50466593 -126507547 + L1PA3 LINE L1 6117 6155 0 1234 56 6 34 chrX 50466781 50466960 -126507180 + L1PA4 LINE L1 5982 6155 0 389 293 93 21 chrX 50467339 50467479 -126506661 + L2 LINE L2 3115 3264 -8 777 247 33 31 chrX 50468204 50468584 -126505556 + LTR16A LTR ERVL 18 444 -6 287 218 39 13 chrX 50468789 50468867 -126505273 + HERVFH21 LTR ERV1 6 85 -6444 191 281 53 0 chrX 50468889 50468946 -126505194 - MIR SINE MIR -86 176 117 17240 108 1 9 chrX 50468951 50471581 -126502559 - L1PA8 LINE L1 -992 5154 2544 4329 90 12 3 chrX 50471574 50472248 -126501892 + L1PA8 LINE L1 5173 5861 -311 * 272 250 0 15 chrX 50472263 50472331 -126501809 - MIR SINE MIR -164 98 32 501 301 61 6 chrX 50472862 50473025 -126501115 + MER58A DNA MER1_type 7 178 -46 269 103 0 0 chrX 50473125 50473164 -126500976 + MER58A DNA MER1_type 172 210 -14 6006 20 0 3 chrX 50473164 50473864 -126500276 - L1PA2 LINE L1 -4 6151 5454 323 248 48 9 chrX 50473883 50473988 -126500152 - L1ME3A LINE L1 -214 5956 5848 21 57 0 0 chrX 50474078 50474113 -126500027 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chrX 50474146 50474196 -126499944 + AT_rich Low_complexity Low_complexity 1 50 0 26562 82 11 1 chrX 50474413 50478020 -126496120 + L1PA7 LINE L1 1 3643 -2503 2918 116 0 2 chrX 50478120 50478614 -126495526 + L1PA7 LINE L1 5185 5677 -477 7188 48 1 0 chrX 50478614 50479640 -126494500 + L1PA4 LINE L1 5161 6187 0 3381 81 2 6 chrX 50479640 50480111 -126494029 + L1PA7 LINE L1 5679 6147 -7 8241 216 42 15 chrX 50480114 50483516 -126490624 + L1MA8 LINE L1 2807 6291 0 2946 165 11 16 chrX 50483516 50484085 -126490055 + L1MB1 LINE L1 5601 6168 0 3552 44 2 0 chrX 50484159 50484592 -126489548 - L1PA5 LINE L1 -7 6147 5714 392 273 25 12 chrX 50484737 50484898 -126489242 - L1PA16 LINE L1 -106 6060 5898 315 0 0 0 chrX 50484945 50484980 -126489160 + (T)n Simple_repeat Simple_repeat 1 35 0 331 366 18 30 chrX 50485350 50485514 -126488626 + MER5B DNA MER1_type 17 178 0 324 0 0 0 chrX 50486364 50486400 -126487740 + (CA)n Simple_repeat Simple_repeat 2 37 0 186 337 107 30 chrX 50487299 50487468 -126486672 + L2 LINE L2 2870 3051 -221 509 251 86 34 chrX 50487672 50487847 -126486293 + MIR SINE MIR 7 190 -72 427 254 25 16 chrX 50488120 50488242 -126485898 - MIR3 SINE MIR -11 197 75 223 260 13 39 chrX 50488370 50488447 -126485693 - MIR SINE MIR -165 97 23 2286 170 9 41 chrX 50488571 50489035 -126485105 - LTR2 LTR ERV1 0 449 1 666 256 30 6 chrX 50489213 50489381 -126484759 + MIR SINE MIR 91 262 0 229 180 180 10 chrX 50489446 50489546 -126484594 + L1MEc LINE L1 2288 2404 -3992 370 296 56 32 chrX 50489882 50490007 -126484133 - L3 LINE CR1 -215 1362 1235 190 288 150 12 chrX 50490145 50490225 -126483915 - L2 LINE L2 -48 3224 3134 246 352 38 0 chrX 50490467 50490572 -126483568 - L2 LINE L2 -832 2482 2374 230 307 40 0 chrX 50490797 50490872 -126483268 + MER5A DNA MER1_type 7 84 -105 408 294 88 24 chrX 50490984 50491154 -126482986 - MIR3 SINE MIR -5 203 23 180 200 0 0 chrX 50491462 50491502 -126482638 + (TA)n Simple_repeat Simple_repeat 2 41 0 1957 274 28 6 chrX 50492260 50492753 -126481387 + L1MDa LINE L1 19 522 -6018 1507 261 49 42 chrX 50492931 50493197 -126480943 + L1PBa LINE L1 399 662 -6201 7178 55 2 8 chrX 50493197 50494574 -126479566 - L1PA5 LINE L1 -3 6151 4779 1507 261 49 42 chrX 50494574 50494882 -126479258 + L1PBa LINE L1 662 977 -5886 7126 173 30 4 chrX 50494887 50496294 -126477846 + L1PBa LINE L1 1339 2782 -4081 3994 207 4 0 chrX 50496296 50497118 -126477022 + L1MDa LINE L1 2504 3328 -3212 3041 28 0 0 chrX 50497115 50497474 -126476666 - L1P LINE L1 -1368 4778 4420 * 6780 30 1 6 chrX 50497469 50498634 -126475506 + L1PA3 LINE L1 4908 6064 -91 1128 70 0 0 chrX 50498737 50498928 -126475212 + L1PA7 LINE L1 5992 6182 0 799 225 101 42 chrX 50499027 50499454 -126474686 + L1MC5 LINE L1 7452 7903 -58 890 215 5 14 chrX 50499485 50499699 -126474441 + L1MD1 LINE L1 5625 5836 -406 309 153 35 0 chrX 50499706 50499801 -126474339 + AluSp/q SINE Alu 233 312 0 607 118 0 0 chrX 50499801 50499886 -126474254 + Tigger3b DNA MER2_type 340 424 -807 7575 206 19 13 chrX 50499989 50500985 -126473155 + L1PB1 LINE L1 3414 4403 -1748 225 65 0 0 chrX 50500985 50501016 -126473124 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7575 206 19 13 chrX 50501016 50502384 -126471756 + L1PB1 LINE L1 4403 5791 -360 331 266 0 43 chrX 50502427 50502521 -126471619 + L1MC4 LINE L1 6614 6703 -1339 1938 163 5 32 chrX 50502524 50502904 -126471236 + L1PB1 LINE L1 5782 6151 0 986 173 42 14 chrX 50502908 50503122 -126471018 + L1MDa LINE L1 1992 2211 -4329 4252 132 37 5 chrX 50503237 50503973 -126470167 + Tigger3b DNA MER2_type 470 1228 -3 467 164 0 0 chrX 50504023 50504090 -126470050 + Tigger7 DNA MER2_type 2421 2487 0 441 153 82 0 chrX 50504090 50504188 -126469952 + L1MDa LINE L1 2315 2420 -4120 * 7342 225 35 39 chrX 50504187 50506073 -126468067 - L1 LINE L1 -1891 5674 3795 7000 67 3 0 chrX 50506073 50507165 -126466975 - L1PA7 LINE L1 -3 6151 5058 7342 225 35 39 chrX 50507165 50507798 -126466342 - L1 LINE L1 -3770 3795 3161 852 232 62 33 chrX 50507797 50508318 -126465822 - L1 LINE L1 -3697 2337 1788 * 2302 294 59 23 chrX 50508487 50510584 -126463556 - L1 LINE L1 -4163 1872 159 4934 40 2 0 chrX 50510584 50511211 -126462929 + L1PA5 LINE L1 5554 6181 0 2302 294 59 23 chrX 50511211 50511365 -126462775 - L1 LINE L1 -5876 159 12 693 277 107 50 chrX 50511548 50512237 -126461903 - L1ME4a LINE L1 -104 6017 5297 231 267 13 40 chrX 50512781 50512856 -126461284 + MER5B DNA MER1_type 1 73 -105 445 303 56 11 chrX 50513519 50513697 -126460443 - MIR SINE MIR 0 262 77 677 343 30 0 chrX 50513739 50513975 -126460165 + MIR SINE MIR 20 262 0 332 300 98 17 chrX 50514317 50514525 -126459615 - MIR SINE MIR -17 245 16 261 272 0 3 chrX 50514761 50514824 -126459316 + MIR SINE MIR 40 101 -107 509 335 124 20 chrX 50514826 50515220 -126458920 + L2 LINE L2 2709 3139 -174 217 204 273 0 chrX 50515344 50515432 -126458708 - MER5A DNA MER1_type -77 112 1 288 287 11 11 chrX 50515791 50515885 -126458255 + MIR SINE MIR 153 246 -16 678 268 93 32 chrX 50516680 50516926 -126457214 - MIR SINE MIR 0 262 2 343 274 2 12 chrX 50517239 50517336 -126456804 - MIR SINE MIR -64 144 66 249 271 0 0 chrX 50517354 50517402 -126456738 - L2 LINE L2 -14 3299 3252 407 359 14 14 chrX 50518699 50518844 -126455296 - MIR3 SINE MIR -48 160 16 567 325 24 5 chrX 50519241 50519465 -126454675 - MIR SINE MIR 0 262 37 487 309 67 12 chrX 50519652 50519817 -126454323 + MIR3 SINE MIR 28 201 -7 336 295 159 62 chrX 50520291 50520518 -126453622 - L2 LINE L2 -5 3267 3019 5960 211 6 18 chrX 50520629 50521930 -126452210 - L1P LINE L1 -1329 4817 3532 5997 217 24 4 chrX 50521933 50523434 -126450706 + L1PA13 LINE L1 2031 3574 -3223 2191 108 3 3 chrX 50523434 50523730 -126450410 - AluSp SINE Alu -17 296 1 315 0 0 0 chrX 50523758 50523793 -126450347 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 3034 170 24 56 chrX 50523794 50525328 -126448812 - L1PB2 LINE L1 -5 6146 4575 398 190 25 0 chrX 50525323 50525402 -126448738 + L1PA13 LINE L1 3557 3637 -3160 * 29 0 0 0 chrX 50525403 50525432 -126448708 + AT_rich Low_complexity Low_complexity 1 29 0 561 55 0 0 chrX 50525432 50525505 -126448635 - L1PA4 LINE L1 -3 6152 6080 832 20 0 0 chrX 50525505 50525603 -126448537 + L1PA4 LINE L1 5999 6096 -59 2693 208 19 8 chrX 50525613 50525815 -126448325 + L1PA13 LINE L1 3646 3844 -2953 306 0 0 0 chrX 50525815 50525849 -126448291 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2693 208 19 8 chrX 50525849 50526282 -126447858 + L1PA13 LINE L1 3844 4288 -2509 2217 147 20 2 chrX 50526281 50526682 -126447458 + L1M1 LINE L1 2349 2756 -4809 * 314 284 0 32 chrX 50526682 50526777 -126447363 - L1MC4 LINE L1 -1342 6700 6609 * 396 253 0 11 chrX 50526741 50526832 -126447308 + L1MC4 LINE L1 6614 6703 -1339 223 71 48 0 chrX 50526835 50526877 -126447263 + (TA)n Simple_repeat Simple_repeat 2 45 0 4640 131 34 11 chrX 50526878 50527727 -126446413 + L1M1 LINE L1 2760 3628 -3937 321 132 0 4 chrX 50527727 50527780 -126446360 - MSTA LTR MaLR -313 51 1 968 154 6 12 chrX 50527783 50527952 -126446188 - L1P4 LINE L1 -519 5647 5480 661 231 45 0 chrX 50527956 50528129 -126446011 + L1P4 LINE L1 5293 5472 -702 24 0 0 0 chrX 50528129 50528153 -126445987 + AT_rich Low_complexity Low_complexity 1 24 0 3299 23 0 0 chrX 50528153 50528539 -126445601 - L1PA3 LINE L1 0 6155 5770 6704 14 0 1 chrX 50528543 50529309 -126444831 - L1HS LINE L1 0 6155 5391 2487 208 27 52 chrX 50529294 50529483 -126444657 + L1MB7 LINE L1 5495 5687 -497 * 675 139 88 0 chrX 50529483 50529620 -126444520 + L1MA7 LINE L1 6143 6291 0 2487 208 27 52 chrX 50529620 50530128 -126444012 + L1MB7 LINE L1 5687 6175 -9 324 251 211 6 chrX 50530128 50530299 -126443841 + L1ME4a LINE L1 5726 5931 -190 383 0 21 0 chrX 50530944 50530991 -126443149 + (TA)n Simple_repeat Simple_repeat 1 48 0 1160 137 20 106 chrX 50530996 50531064 -126443076 + L1M1 LINE L1 2433 2505 -5060 1950 92 0 15 chrX 50531064 50531326 -126442814 + AluSc SINE Alu 50 307 -2 1160 137 20 106 chrX 50531326 50531549 -126442591 + L1M1 LINE L1 2505 2699 -4866 * 4206 199 27 18 chrX 50531546 50532693 -126441447 - L1MA4A LINE L1 -159 6144 4992 * 11642 195 31 12 chrX 50532691 50537597 -126436543 - L1PA13 LINE L1 -5 7596 2394 2204 107 0 0 chrX 50537597 50537895 -126436245 - AluY SINE Alu -13 298 1 11642 195 31 12 chrX 50537895 50540331 -126433809 - L1PA13 LINE L1 -5207 2394 5 4658 158 36 7 chrX 50540373 50541335 -126432805 + L1MA1 LINE L1 2491 3480 -4085 6720 216 14 53 chrX 50541536 50542128 -126432012 + L1MA1 LINE L1 3460 4074 -3491 180 77 0 0 chrX 50542128 50542154 -126431986 + (CAA)n Simple_repeat Simple_repeat 1 26 0 6720 216 14 53 chrX 50542154 50542789 -126431351 + L1MA1 LINE L1 4074 4732 -2833 2073 145 7 0 chrX 50542789 50543085 -126431055 + AluSg SINE Alu 1 298 -12 6720 216 14 53 chrX 50543085 50544134 -126430006 + L1MA1 LINE L1 4732 5645 -1920 * 25183 47 3 1 chrX 50544132 50548235 -126425905 - L1PA4 LINE L1 -3 6152 2046 5748 184 13 15 chrX 50548226 50550318 -126423822 + L1MA1 LINE L1 5637 7721 0 * 12356 204 24 8 chrX 50550317 50554596 -126419544 + L1MA3 LINE L1 3379 7724 0 245 284 63 11 chrX 50554760 50554855 -126419285 - MIR3 SINE MIR -3 205 106 276 263 50 0 chrX 50555099 50555179 -126418961 + L2 LINE L2 3222 3305 -8 343 313 99 25 chrX 50555277 50555520 -126418620 - L1ME4a LINE L1 -63 6058 5798 6350 26 0 0 chrX 50556279 50557050 -126417090 - L1PA3 LINE L1 -5 6150 5380 4122 30 0 0 chrX 50557046 50557573 -126416567 + L1PA3 LINE L1 4869 5395 -751 * 303 237 0 0 chrX 50557605 50557664 -126416476 + MER20 DNA MER1_type 1 59 -160 2662 139 67 0 chrX 50557683 50558194 -126415946 - L1MA2 LINE L1 0 6304 5760 10634 134 17 12 chrX 50558294 50561202 -126412938 - L1P3 LINE L1 -3528 2933 1 378 229 0 0 chrX 50561207 50561303 -126412837 - L1 LINE L1 -3650 2496 2401 3289 184 5 37 chrX 50561403 50562274 -126411866 - L1MA2 LINE L1 -646 5656 4837 1771 124 101 0 chrX 50562274 50562532 -126411608 - AluSx SINE Alu -28 284 1 3289 184 5 37 chrX 50562532 50562859 -126411281 - L1MA2 LINE L1 -1465 4837 4501 14256 97 8 59 chrX 50562865 50566144 -126407996 - L1PA7 LINE L1 -186 5968 2868 37778 80 3 3 chrX 50566244 50567010 -126407130 - L1P2 LINE L1 -477 5677 4912 2250 120 0 0 chrX 50567010 50567318 -126406822 - AluY SINE Alu -3 308 1 37778 80 3 3 chrX 50567318 50572229 -126401911 - L1P2 LINE L1 -1242 4912 2 277 281 0 62 chrX 50572249 50572345 -126401795 + L2 LINE L2 3182 3271 -1 272 351 99 8 chrX 50572651 50572782 -126401358 + MER5A DNA MER1_type 1 143 -46 287 164 35 0 chrX 50572939 50573008 -126401132 - L1MDb LINE L1 -5108 962 890 11316 179 31 8 chrX 50573113 50575380 -126398760 - L1PBa LINE L1 -4544 2319 1 5855 197 23 31 chrX 50575380 50576592 -126397548 - L1 LINE L1 -2347 5218 3998 1545 215 3 3 chrX 50576592 50576880 -126397260 - AluSx SINE Alu -24 288 1 5855 197 23 31 chrX 50576880 50578552 -126395588 - L1 LINE L1 -3567 3998 2359 1882 176 36 36 chrX 50578556 50578920 -126395220 - THE1B LTR MaLR 0 364 1 8533 109 129 0 chrX 50578920 50580320 -126393820 - THE1B-int LTR MaLR 0 1580 1 1330 204 46 11 chrX 50580320 50580604 -126393536 - THE1B LTR MaLR 0 364 71 5000 241 24 10 chrX 50580618 50581640 -126392500 - L1 LINE L1 -6283 1282 237 198 0 0 0 chrX 50581640 50581662 -126392478 + (CTG)n Simple_repeat Simple_repeat 3 24 0 5000 241 24 10 chrX 50581662 50581890 -126392250 - L1 LINE L1 -7328 237 14 * 25262 35 2 0 chrX 50581889 50586159 -126387981 - L1PA4 LINE L1 -244 5911 1634 206 314 49 10 chrX 50586267 50586369 -126387771 + MIR SINE MIR 101 206 -56 3843 219 69 10 chrX 50586491 50588011 -126386129 - L1MB7 LINE L1 -1 6183 4565 428 225 9 0 chrX 50588051 50588162 -126385978 - L1MB7 LINE L1 -1712 4434 4323 2863 143 8 0 chrX 50588176 50588659 -126385481 - L1MA1 LINE L1 0 7721 7235 18771 188 24 23 chrX 50588661 50589349 -126384791 - L1MA1 LINE L1 -565 7158 6472 348 24 0 0 chrX 50589349 50589390 -126384750 + (TAG)n Simple_repeat Simple_repeat 3 43 0 18771 188 24 23 chrX 50589390 50592382 -126381758 - L1MA1 LINE L1 -1251 6472 3483 201 39 0 0 chrX 50592382 50592408 -126381732 + (TG)n Simple_repeat Simple_repeat 1 26 0 18771 188 24 23 chrX 50592408 50595860 -126378280 - L1MA1 LINE L1 -4240 3483 18 1546 204 4 7 chrX 50596569 50596907 -126377233 - AluJb SINE Alu 0 341 5 352 276 98 0 chrX 50596926 50597049 -126377091 - MIR SINE MIR -75 187 53 2407 174 14 5 chrX 50597515 50597939 -126376201 - MSTA LTR MaLR 0 428 1 410 319 56 0 chrX 50598325 50598469 -126375671 - L2 LINE L2 0 3313 3162 1931 195 72 23 chrX 50598855 50599285 -126374855 + LTR1B LTR ERV1 375 825 -1 267 297 36 43 chrX 50599315 50599453 -126374687 - MIR SINE MIR -16 246 110 325 286 92 0 chrX 50599540 50599659 -126374481 + L3b LINE CR1 1317 1446 -137 550 367 103 14 chrX 50600036 50600548 -126373592 + L3 LINE CR1 949 1506 -71 787 191 81 10 chrX 50600549 50600758 -126373382 + L1M1 LINE L1 5141 5364 -782 * 4961 44 0 0 chrX 50600757 50601366 -126372774 - L1PA5 LINE L1 -1559 4587 3979 7261 47 1 0 chrX 50601366 50602930 -126371210 + L1PA5 LINE L1 4577 6143 -11 561 30 0 0 chrX 50602930 50602997 -126371143 + (TA)n Simple_repeat Simple_repeat 1 67 0 1186 152 49 0 chrX 50603017 50603241 -126370899 + L1M1 LINE L1 5369 5603 -699 1105 208 9 4 chrX 50603243 50603474 -126370666 + L1P3 LINE L1 4 235 -5640 329 193 0 0 chrX 50603475 50603532 -126370608 + L1P3 LINE L1 858 914 -4961 18039 159 22 36 chrX 50603541 50606006 -126368134 + L1P3 LINE L1 1254 3656 -2805 261 0 0 0 chrX 50606006 50606035 -126368105 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 18039 159 22 36 chrX 50606035 50607131 -126367009 + L1P3 LINE L1 3656 4766 -1695 465 117 104 0 chrX 50607139 50607216 -126366924 + MLT2A2 LTR ERVL 124 208 -245 203 200 0 0 chrX 50607237 50607272 -126366868 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 289 0 0 chrX 50607272 50607362 -126366778 - L1MC4 LINE L1 -1339 6703 6614 284 77 77 19 chrX 50607377 50607429 -126366711 + MLT2A2 LTR ERVL 399 453 0 408 133 0 0 chrX 50607430 50607490 -126366650 + L1PA8A LINE L1 4529 4588 -1558 5210 106 2 15 chrX 50607508 50608337 -126365803 + L1PA8A LINE L1 4566 5375 -756 2104 139 0 0 chrX 50608337 50608639 -126365501 + AluSx SINE Alu 1 302 -10 5210 106 2 15 chrX 50608639 50609097 -126365043 + L1PA8A LINE L1 5375 5837 -294 285 243 27 68 chrX 50609146 50609220 -126364920 - MER2 DNA MER2_type -1 344 274 2020 149 6 0 chrX 50609221 50609550 -126364590 + L1PA8 LINE L1 5842 6172 0 4098 112 55 18 chrX 50609561 50610240 -126363900 + L1MA1 LINE L1 5592 6295 -7 1075 245 83 28 chrX 50610333 50610659 -126363481 + MER2 DNA MER2_type 2 345 0 4047 32 1 0 chrX 50610995 50611709 -126362431 - L1PA3 LINE L1 -413 5742 5028 3337 35 0 0 chrX 50611709 50612144 -126361996 + L1PA3 LINE L1 5743 6177 0 239 227 113 0 chrX 50612194 50612291 -126361849 - L1ME3A LINE L1 -5 6165 6058 617 242 42 81 chrX 50612307 50612567 -126361573 - L1ME3A LINE L1 -200 5970 5721 1306 150 65 39 chrX 50612569 50612829 -126361311 + MER68 LTR ERV1 3 269 -293 198 0 0 0 chrX 50614342 50614364 -126359776 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 256 353 110 15 chrX 50614654 50614790 -126359350 + MIR SINE MIR 3 151 -111 1612 285 22 0 chrX 50614792 50615332 -126358808 + L1MB3 LINE L1 4398 4949 -1197 9284 45 2 0 chrX 50615342 50616490 -126357650 - L1PA4 LINE L1 -1055 5091 3942 7553 28 2 1 chrX 50616491 50617550 -126356590 + L1PA4 LINE L1 5094 6153 -2 1942 181 31 34 chrX 50617551 50618277 -126355863 + L1MB3 LINE L1 4945 5667 -516 2775 173 23 30 chrX 50618315 50618889 -126355251 - L1PB4 LINE L1 -8 6148 5579 2582 168 16 4 chrX 50618889 50619375 -126354765 + L1MB3 LINE L1 5676 6181 -2 285 135 0 0 chrX 50619376 50619428 -126354712 + L1MB3 LINE L1 6132 6183 0 271 350 0 0 chrX 50619827 50619887 -126354253 + MER91A DNA MER1_type 1 60 -136 396 297 147 6 chrX 50621228 50621388 -126352752 + MIR3 SINE MIR 9 187 -21 273 172 0 0 chrX 50622483 50622547 -126351593 + CT-rich Low_complexity Low_complexity 2 65 0 312 48 0 0 chrX 50622547 50622589 -126351551 + (CA)n Simple_repeat Simple_repeat 1 42 0 1228 330 80 12 chrX 50622841 50622919 -126351221 - L2 LINE L2 -6 3307 3236 574 259 97 40 chrX 50622919 50623166 -126350974 - MIR SINE MIR 0 262 2 1228 330 80 12 chrX 50623166 50623869 -126350271 - L2 LINE L2 -77 3236 2463 272 27 27 0 chrX 50623914 50623951 -126350189 + (TC)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 50624017 50624045 -126350095 + AT_rich Low_complexity Low_complexity 1 28 0 286 383 25 0 chrX 50624058 50624178 -126349962 - L2 LINE L2 -1 3271 3149 426 20 0 0 chrX 50624247 50624298 -126349842 + (CA)n Simple_repeat Simple_repeat 2 52 0 448 229 99 75 chrX 50624449 50624650 -126349490 + MIR SINE MIR 6 211 -51 218 254 0 68 chrX 50625087 50625146 -126348994 - L3 LINE CR1 -2 1575 1521 1216 234 93 26 chrX 50625179 50625422 -126348718 - Charlie4a DNA MER1_type -1514 447 222 2170 152 86 5 chrX 50625422 50625818 -126348322 - MSTA LTR MaLR 0 428 1 8486 163 7 50 chrX 50625818 50627467 -126346673 - MSTA-int LTR MaLR 0 1580 4 2070 145 132 5 chrX 50627470 50627850 -126346290 - MSTA LTR MaLR 0 428 1 1216 234 93 26 chrX 50627850 50628020 -126346120 - Charlie4a DNA MER1_type -1740 221 1 296 332 116 58 chrX 50628067 50628567 -126345573 - L3 LINE CR1 -109 1468 940 404 129 0 0 chrX 50628904 50628966 -126345174 - MSTA LTR MaLR 0 428 367 869 305 28 4 chrX 50629125 50629374 -126344766 - MIR SINE MIR 0 262 8 417 346 8 0 chrX 50629436 50629566 -126344574 - MER5A DNA MER1_type -29 160 30 535 226 39 96 chrX 50630011 50630219 -126343921 - MIR SINE MIR -12 250 55 305 227 32 149 chrX 50630247 50630310 -126343830 + L1MEc LINE L1 1313 1349 -5047 11456 38 25 0 chrX 50630310 50632454 -126341686 + L1PA3 LINE L1 3991 6155 0 305 227 32 149 chrX 50632454 50632544 -126341596 + L1MEc LINE L1 1349 1448 -4948 440 313 116 17 chrX 50632783 50632964 -126341176 - MIR3 SINE MIR -58 150 4 1780 249 47 29 chrX 50633374 50633860 -126340280 - MLT1D LTR MaLR -10 495 1 208 373 0 0 chrX 50633862 50633921 -126340219 - L2 LINE L2 -99 3173 3115 350 332 208 16 chrX 50634090 50634470 -126339670 - L2 LINE L2 -544 2770 2318 220 307 128 21 chrX 50634778 50634946 -126339194 - MIR SINE MIR -41 221 36 486 278 12 37 chrX 50634949 50635111 -126339029 + MIR SINE MIR 104 261 -1 848 242 71 9 chrX 50635175 50635257 -126338883 + MER58A DNA MER1_type 1 77 -2343 192 40 0 0 chrX 50635257 50635282 -126338858 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 848 242 71 9 chrX 50635282 50635410 -126338730 + MER58A DNA MER1_type 77 224 0 306 50 0 0 chrX 50635465 50635505 -126338635 + (CA)n Simple_repeat Simple_repeat 1 40 0 1784 202 34 70 chrX 50637577 50638048 -126336092 + MLT1C LTR MaLR 8 461 -6 1901 150 4 0 chrX 50638727 50639049 -126335091 + AluSg SINE Alu 1 323 0 485 288 20 20 chrX 50639483 50639629 -126334511 - MIR SINE MIR -112 150 5 192 307 133 0 chrX 50639866 50639941 -126334199 - L2 LINE L2 -47 3225 3141 207 214 0 0 chrX 50641186 50641228 -126332912 - MIR SINE MIR -12 250 209 189 0 0 0 chrX 50641233 50641254 -126332886 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 296 184 68 117 chrX 50641390 50641553 -126332587 - MER112 DNA MER1_type -35 225 71 859 211 18 18 chrX 50641750 50641973 -126332167 + MER33 DNA MER1_type 1 215 -97 1943 109 0 11 chrX 50641973 50642247 -126331893 + AluSc SINE Alu 17 287 -22 252 0 0 0 chrX 50642249 50642277 -126331863 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 245 233 23 0 chrX 50642277 50642363 -126331777 + L1MC4 LINE L1 6616 6703 -1339 401 207 9 0 chrX 50642365 50642476 -126331664 + MER33 DNA MER1_type 213 324 0 1069 316 107 33 chrX 50642838 50643475 -126330665 - L3 LINE CR1 -202 1375 692 3831 219 11 1 chrX 50644360 50645255 -126328885 + L1 LINE L1 4436 5339 -807 1052 53 0 40 chrX 50645255 50645404 -126328736 + L1PA5 LINE L1 6011 6154 0 1603 25 36 5 chrX 50645404 50645588 -126328552 - L1PA3 LINE L1 -327 5828 5636 2940 40 0 0 chrX 50645588 50645939 -126328201 + L1PA3 LINE L1 5803 6155 0 2076 74 11 0 chrX 50645939 50646223 -126327917 + L1P5 LINE L1 5342 5628 -523 599 61 0 0 chrX 50646466 50646548 -126327592 - L1PA5 LINE L1 -3 6151 6070 507 327 105 12 chrX 50646659 50646907 -126327233 - L3 LINE CR1 -239 1338 1068 24 0 0 0 chrX 50647036 50647060 -126327080 + AT_rich Low_complexity Low_complexity 1 24 0 2016 153 7 0 chrX 50647880 50648175 -126325965 - AluSx SINE Alu -15 297 1 205 274 0 0 chrX 50648624 50648686 -126325454 + A-rich Low_complexity Low_complexity 1 62 0 * 224 228 0 18 chrX 50648650 50648707 -126325433 + GA-rich Low_complexity Low_complexity 2 57 0 432 268 84 7 chrX 50650076 50650218 -126323922 + MIR SINE MIR 106 258 -4 760 60 0 0 chrX 50650254 50650354 -126323786 + L1PA4 LINE L1 6056 6155 0 2270 110 3 0 chrX 50650724 50651025 -126323115 - AluSp SINE Alu -11 302 1 247 353 65 22 chrX 50651057 50651241 -126322899 + L2 LINE L2 2638 2829 -485 214 319 170 21 chrX 50651449 50651690 -126322450 - L2 LINE L2 -92 3221 2945 561 343 113 18 chrX 50651860 50652242 -126321898 - L2 LINE L2 -450 2864 2447 437 291 50 70 chrX 50652410 50652554 -126321586 - MIR SINE MIR -2 260 120 2429 80 0 3 chrX 50652554 50652868 -126321272 + AluSp SINE Alu 1 313 0 437 291 50 70 chrX 50652868 50652922 -126321218 - MIR SINE MIR -142 120 66 22 0 0 0 chrX 50653200 50653222 -126320918 + AT_rich Low_complexity Low_complexity 1 22 0 309 247 0 52 chrX 50653402 50653479 -126320661 + MIR SINE MIR 2 74 -188 305 275 0 0 chrX 50654926 50655006 -126319134 + MER116 DNA Mariner 1 80 0 788 293 69 0 chrX 50655147 50655379 -126318761 - MIR SINE MIR -11 251 4 317 293 59 31 chrX 50655640 50655896 -126318244 - L1ME4a LINE L1 -152 5969 5707 219 114 0 0 chrX 50655899 50655934 -126318206 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 390 338 31 12 chrX 50655939 50656099 -126318041 - L1ME4a LINE L1 -2140 5668 5506 568 334 126 20 chrX 50656115 50656456 -126317684 + L3 LINE CR1 1116 1492 -85 845 148 0 0 chrX 50656460 50656582 -126317558 - FLAM_A SINE Alu -10 123 2 436 322 87 11 chrX 50656994 50657177 -126316963 + MIR3 SINE MIR 1 197 -11 192 246 0 35 chrX 50657307 50657364 -126316776 + L2 LINE L2 3213 3267 -5 2410 147 41 12 chrX 50658556 50658970 -126315170 - MSTB LTR MaLR 0 426 1 7938 176 62 32 chrX 50658974 50660194 -126313946 - MSTB-int LTR MaLR -4 1647 367 2748 134 12 30 chrX 50660194 50660687 -126313453 + L1PB2 LINE L1 5665 6148 -3 7938 176 62 32 chrX 50660687 50661065 -126313075 - MSTB-int LTR MaLR -1284 367 2 2085 197 31 10 chrX 50661066 50661482 -126312658 - MSTB LTR MaLR 0 426 2 206 385 74 0 chrX 50661581 50661703 -126312437 - MIR3 SINE MIR -48 160 30 321 376 15 20 chrX 50662315 50662517 -126311623 + L2 LINE L2 2153 2353 -961 730 296 106 38 chrX 50662522 50662945 -126311195 - LTR33 LTR ERVL -3 518 67 204 261 0 0 chrX 50662996 50663061 -126311079 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 1995 146 0 0 chrX 50663100 50663388 -126310752 - AluSx SINE Alu -24 288 1 190 349 116 12 chrX 50663758 50663844 -126310296 - MIR SINE MIR -146 116 22 296 264 91 27 chrX 50664166 50664276 -126309864 + MIR SINE MIR 22 138 -70 7460 250 54 19 chrX 50664348 50666783 -126307357 + L1MA4A LINE L1 508 3097 -4111 279 0 0 0 chrX 50666783 50666814 -126307326 + (CA)n Simple_repeat Simple_repeat 2 32 0 7460 250 54 19 chrX 50666814 50667044 -126307096 + L1MA4A LINE L1 3097 3318 -3890 12136 195 38 25 chrX 50667158 50670122 -126304018 + L1MA4A LINE L1 3365 6382 -983 185 32 0 65 chrX 50670122 50670153 -126303987 + (CAT)n Simple_repeat Simple_repeat 3 31 0 12136 195 38 25 chrX 50670153 50671143 -126302997 + L1MA4A LINE L1 6382 7358 -7 250 269 26 26 chrX 50671144 50671222 -126302918 - MIR SINE MIR -2 260 183 938 90 0 0 chrX 50671242 50671375 -126302765 + L1P3 LINE L1 5658 5790 -364 3723 29 0 9 chrX 50671475 50671922 -126302218 - L1PA3 LINE L1 -180 5975 5533 1362 25 0 0 chrX 50671906 50672064 -126302076 + L1PA3 LINE L1 5391 5548 -607 * 189 250 0 0 chrX 50672527 50672587 -126301553 + (TA)n Simple_repeat Simple_repeat 1 60 0 341 234 48 32 chrX 50672613 50672737 -126301403 - L1MC4 LINE L1 -136 7906 7781 582 255 40 94 chrX 50672738 50673111 -126301029 - L1MC4 LINE L1 -770 7272 6920 * 11098 163 35 32 chrX 50673109 50675506 -126298634 + L1 LINE L1 1453 3860 -3705 513 100 30 30 chrX 50675528 50675628 -126298512 - L1PA13 LINE L1 -11 6152 6053 5532 189 9 23 chrX 50675651 50677898 -126296242 - L1PB1 LINE L1 -8 6143 3937 4816 215 2 8 chrX 50678032 50679126 -126295014 - L1PB1 LINE L1 -2848 3298 2212 18954 202 15 7 chrX 50679129 50684163 -126289977 - L1PA12 LINE L1 -104 7502 2428 5907 240 16 3 chrX 50684182 50685475 -126288665 - L1PA12 LINE L1 -6271 1310 1 5282 231 25 8 chrX 50685481 50687002 -126287138 + L1 LINE L1 3858 5403 -2162 39706 58 3 1 chrX 50687007 50693154 -126280986 + L1PA2 LINE L1 7 6155 0 1815 224 46 35 chrX 50693150 50693863 -126280277 + L1M1 LINE L1 2871 3591 -3974 * 565 259 24 30 chrX 50693964 50694130 -126280010 - MLT1J LTR MaLR -316 195 31 9414 53 1 0 chrX 50694531 50695783 -126278357 - L1PA4 LINE L1 -1695 4451 3199 7309 52 0 2 chrX 50695783 50697476 -126276664 + L1PA4 LINE L1 4461 6152 -3 22 35 0 0 chrX 50697480 50697509 -126276631 + AT_rich Low_complexity Low_complexity 1 29 0 599 265 70 16 chrX 50697662 50697847 -126276293 - MIR SINE MIR -14 248 54 273 277 170 0 chrX 50698925 50699037 -126275103 + MIR3 SINE MIR 67 197 -11 414 265 188 24 chrX 50699064 50699445 -126274695 + LTR33 LTR ERVL 6 517 -4 471 246 95 30 chrX 50700644 50700823 -126273317 - MIR SINE MIR -21 241 12 537 333 40 10 chrX 50701068 50701269 -126272871 - MIR SINE MIR -50 212 6 445 330 108 24 chrX 50702412 50702782 -126271358 - L2 LINE L2 -2412 902 502 760 266 57 40 chrX 50703874 50704122 -126270018 - MIR SINE MIR -3 259 8 450 257 0 0 chrX 50704225 50704326 -126269814 + MIR SINE MIR 52 152 -110 200 317 12 24 chrX 50704506 50704588 -126269552 - L2 LINE L2 -468 2846 2766 190 269 0 60 chrX 50704670 50704737 -126269403 - L2 LINE L2 -17 3255 3193 1987 249 36 9 chrX 50704813 50705391 -126268749 + L1ME1 LINE L1 5542 6135 -31 236 355 113 0 chrX 50705697 50705821 -126268319 + L3 LINE CR1 590 727 -850 395 89 0 0 chrX 50706011 50706067 -126268073 + tRNA-Pro-CCT tRNA tRNA 1 56 -19 394 291 106 0 chrX 50706225 50706376 -126267764 - MIR SINE MIR -1 261 95 350 314 35 47 chrX 50706758 50706930 -126267210 - MER5A DNA MER1_type -6 183 14 441 239 0 0 chrX 50707492 50707609 -126266531 + (TATG)n Simple_repeat Simple_repeat 2 118 0 225 140 20 0 chrX 50707611 50707661 -126266479 + LTR66 LTR ERVL 389 439 -171 287 247 0 49 chrX 50707669 50707750 -126266390 + MER112 DNA MER1_type 183 259 -1 297 280 13 0 chrX 50709149 50709224 -126264916 + L2 LINE L2 3238 3313 0 353 381 41 0 chrX 50709338 50709485 -126264655 + L2 LINE L2 3116 3268 -4 1000 230 157 0 chrX 50709626 50709887 -126264253 - L2 LINE L2 0 3313 3012 273 284 0 0 chrX 50710368 50710442 -126263698 + L2 LINE L2 3239 3312 -1 236 337 63 21 chrX 50710442 50710537 -126263603 + L2 LINE L2 3157 3255 -17 387 282 8 8 chrX 50710946 50711063 -126263077 - MIR3 SINE MIR -46 162 46 268 302 63 37 chrX 50711063 50711259 -126262881 + L1M3a LINE L1 207 724 -5231 * 1408 270 105 24 chrX 50711258 50711934 -126262206 + L1M3a LINE L1 2044 2664 -4901 3383 96 7 0 chrX 50711934 50712382 -126261758 + MLT2A2 LTR ERVL 3 453 0 1408 270 105 24 chrX 50712382 50713097 -126261043 + L1M3a LINE L1 2664 3620 -3945 12606 189 36 1 chrX 50713113 50715525 -126258615 + L1M1 LINE L1 19 2516 -5049 3397 110 14 35 chrX 50715571 50715955 -126258185 - L1PA13 LINE L1 -7 6156 5786 1965 148 7 0 chrX 50715955 50716246 -126257894 - AluSx SINE Alu -19 293 1 3397 110 14 35 chrX 50716246 50716432 -126257708 - L1PA13 LINE L1 -377 5786 5598 711 268 5 24 chrX 50716432 50716637 -126257503 + L1M3a LINE L1 195 395 -7170 364 255 0 0 chrX 50716648 50716746 -126257394 - L1 LINE L1 -3028 3118 3021 2463 145 19 25 chrX 50716780 50717250 -126256890 + L1MA2 LINE L1 5838 6304 0 7316 225 16 17 chrX 50717268 50718774 -126255366 + L1M3a LINE L1 3600 5105 -2460 1171 55 12 6 chrX 50718774 50718938 -126255202 + (GAAA)n Simple_repeat Simple_repeat 4 168 0 7316 225 16 17 chrX 50718938 50719455 -126254685 + L1M3a LINE L1 5105 5621 -1944 1957 143 45 40 chrX 50719461 50719881 -126254259 + L1MA3 LINE L1 5884 6305 0 1787 256 86 34 chrX 50719907 50720811 -126253329 + L1MA9 LINE L1 3653 4603 -2962 40023 61 3 1 chrX 50720826 50726966 -126247174 - L1PA4 LINE L1 0 6155 1 2649 255 35 3 chrX 50726986 50727838 -126246302 + L1MA9 LINE L1 4640 5518 -2047 5169 111 11 1 chrX 50727867 50728002 -126246138 + L1PA13 LINE L1 5351 5483 -680 2137 120 3 13 chrX 50728002 50728311 -126245829 + AluSg SINE Alu 1 306 -4 5169 111 11 1 chrX 50728311 50728976 -126245164 + L1PA13 LINE L1 5483 6159 -4 5045 186 27 44 chrX 50728978 50730699 -126243441 + L1MA9 LINE L1 5508 7204 -527 216 67 0 0 chrX 50730699 50730729 -126243411 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 5045 186 27 44 chrX 50730729 50731249 -126242891 + L1MA9 LINE L1 7204 7731 0 275 238 175 48 chrX 50731458 50731584 -126242556 - L2 LINE L2 -5 3308 3167 365 342 25 66 chrX 50731612 50731808 -126242332 - L2 LINE L2 -342 2972 2785 205 263 40 81 chrX 50733196 50733295 -126240845 - MIR SINE MIR -76 132 38 324 365 63 16 chrX 50733738 50733864 -126240276 + L2 LINE L2 3137 3268 -4 551 299 58 55 chrX 50734048 50734166 -126239974 + L3 LINE CR1 1029 1145 -432 1209 208 28 81 chrX 50734166 50734561 -126239579 - MLT1A2 LTR MaLR 0 374 1 551 299 58 55 chrX 50734561 50734770 -126239370 + L3 LINE CR1 1145 1357 -220 423 355 17 6 chrX 50735475 50735647 -126238493 + MER5B DNA MER1_type 3 176 -2 4067 154 25 6 chrX 50735817 50736600 -126237540 - L1MA8 LINE L1 -5 7705 6908 1742 210 58 24 chrX 50736606 50736644 -126237496 - L1MA8 LINE L1 -1847 5718 5683 361 0 41 0 chrX 50736644 50736693 -126237447 + (TG)n Simple_repeat Simple_repeat 1 51 0 1742 210 58 24 chrX 50736693 50737120 -126237020 - L1MA8 LINE L1 -1882 5683 5237 * 3206 241 35 2 chrX 50737111 50738084 -126236056 - L1MA8 LINE L1 -2928 4637 3631 5671 123 55 3 chrX 50738103 50739488 -126234652 - L1PA14 LINE L1 -5 7594 6180 8751 208 14 27 chrX 50739494 50741735 -126232405 - L1PA14 LINE L1 -1497 6087 3877 11474 193 16 4 chrX 50741742 50744582 -126229558 - L1PA14 LINE L1 -4970 2611 1 3614 272 38 29 chrX 50744582 50746353 -126227787 - L1MA8 LINE L1 -3929 3636 2097 11512 115 13 1 chrX 50746599 50748303 -126225837 + HERVL-A2 LTR ERVL 1396 3119 -2535 8243 125 33 0 chrX 50748301 50749595 -126224545 + HERVL-A2 LTR ERVL 4318 5654 0 * 1693 211 30 29 chrX 50749595 50750154 -126223986 + MLT2A2 LTR ERVL 1 554 0 4526 282 42 33 chrX 50750159 50750221 -126223919 - L1M3c LINE L1 -4702 2335 2275 1512 200 16 26 chrX 50750221 50750526 -126223614 - AluJb SINE Alu -10 302 1 4526 282 42 33 chrX 50750526 50752411 -126221729 - L1M3c LINE L1 -4762 2275 355 4315 138 4 16 chrX 50752463 50753158 -126220982 + THE1C-int LTR MaLR 894 1580 0 1425 152 34 128 chrX 50753161 50753568 -126220572 + THE1C LTR MaLR 4 372 -3 1131 248 112 9 chrX 50753581 50753904 -126220236 - L1M3c LINE L1 -6668 362 7 332 280 32 24 chrX 50754594 50754719 -126219421 + L1ME3A LINE L1 5813 5938 -232 1114 282 32 72 chrX 50754841 50755338 -126218802 + L1MB8 LINE L1 12 488 -6371 1810 203 59 2 chrX 50755338 50755576 -126218564 - MSTB1 LTR MaLR 0 432 160 2540 57 0 0 chrX 50755576 50755891 -126218249 + L1PA5 LINE L1 5837 6151 -3 1810 203 59 2 chrX 50755891 50756061 -126218079 - MSTB1 LTR MaLR -272 160 1 491 291 56 44 chrX 50756190 50756599 -126217541 + L1MB8 LINE L1 1266 1679 -5180 * 2698 247 32 16 chrX 50756585 50757539 -126216601 + L1MB8 LINE L1 4551 5520 -1437 8765 141 65 43 chrX 50757554 50759270 -126214870 + L1PA7 LINE L1 15 1758 -4700 8056 95 1 1 chrX 50759270 50761205 -126212935 + L1PA7 LINE L1 4537 6469 0 3286 231 40 7 chrX 50761208 50762641 -126211499 + L1MB8 LINE L1 5510 6987 -2 * 420 248 57 13 chrX 50762649 50762806 -126211334 + L1M4 LINE L1 1612 1775 -5080 * 1434 292 66 6 chrX 50762803 50763636 -126210504 + L1M4 LINE L1 3794 4676 -2281 1872 163 39 31 chrX 50763636 50763991 -126210149 + THE1B LTR MaLR 1 358 -6 9494 116 13 68 chrX 50763997 50765668 -126208472 + THE1B-int LTR MaLR 1 1580 0 650 137 0 0 chrX 50765670 50765772 -126208368 + THE1B LTR MaLR 3 104 -260 428 290 118 0 chrX 50765772 50765941 -126208199 + L1M4 LINE L1 5160 5348 -1609 37 23 0 0 chrX 50765976 50766020 -126208120 + AT_rich Low_complexity Low_complexity 1 44 0 816 257 68 9 chrX 50766020 50766613 -126207527 + L1M4 LINE L1 5820 6478 -511 15879 194 56 14 chrX 50766619 50769367 -126204773 + L1 LINE L1 20 2651 -4914 1858 149 49 35 chrX 50769367 50769737 -126204403 + THE1C LTR MaLR 1 375 0 8775 158 25 35 chrX 50769737 50771333 -126202807 + THE1C-int LTR MaLR 1 1580 0 1865 159 46 35 chrX 50771333 50771704 -126202436 + THE1C LTR MaLR 1 375 0 15879 194 56 14 chrX 50771704 50772461 -126201679 + L1 LINE L1 2650 3675 -3890 4093 53 0 0 chrX 50772466 50772995 -126201145 - L1PA4 LINE L1 -226 5929 5401 1780 41 0 0 chrX 50772995 50773203 -126200937 + L1PA4 LINE L1 5934 6152 -3 1989 246 27 23 chrX 50773287 50774063 -126200077 + L1 LINE L1 3673 4451 -3114 9573 105 6 7 chrX 50774098 50776241 -126197899 - L1PA7 LINE L1 0 6469 4195 14783 87 15 5 chrX 50776242 50779114 -126195026 + L1PA6 LINE L1 3261 6147 -7 12693 143 14 42 chrX 50779129 50780279 -126193861 - L1PA7 LINE L1 -3140 3321 2141 14422 37 2 1 chrX 50780279 50782811 -126191329 + L1PA3 LINE L1 3628 6162 0 12693 143 14 42 chrX 50782811 50784990 -126189150 - L1PA7 LINE L1 -4320 2141 5 5572 219 17 12 chrX 50785016 50785475 -126188665 + L1 LINE L1 4503 4958 -2607 1991 144 0 0 chrX 50785475 50785760 -126188380 - AluSc SINE Alu -24 285 1 5572 219 17 12 chrX 50785760 50786809 -126187331 + L1 LINE L1 4958 6019 -1546 * 13145 53 3 5 chrX 50786792 50788580 -126185560 + L1P LINE L1 892 2677 -3469 2566 85 0 0 chrX 50788577 50788942 -126185198 - L1P LINE L1 -1583 4563 4199 * 3570 214 29 28 chrX 50788966 50790705 -126183435 + L1M2 LINE L1 2773 4511 -3054 12646 202 30 19 chrX 50790707 50791569 -126182571 + L1M2 LINE L1 16 867 -6698 7400 35 0 0 chrX 50791569 50793062 -126181078 + L1PA4 LINE L1 4682 6174 0 12646 202 30 19 chrX 50793062 50794614 -126179526 + L1M2 LINE L1 867 2469 -5096 1874 153 3 34 chrX 50794614 50794897 -126179243 + AluSq SINE Alu 3 276 -37 285 75 0 0 chrX 50794897 50794937 -126179203 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 1874 153 3 34 chrX 50794937 50794974 -126179166 + AluSq SINE Alu 276 313 0 12646 202 30 19 chrX 50794974 50795341 -126178799 + L1M2 LINE L1 2469 2830 -4735 377 113 62 0 chrX 50795341 50795421 -126178719 + L1MA1 LINE L1 6218 6302 0 * 4265 186 54 20 chrX 50795418 50796532 -126177608 + L1M2 LINE L1 4492 5643 -1922 759 170 0 20 chrX 50846598 50846745 -126127395 - MER3 DNA MER1_type 0 209 66 225 304 87 0 chrX 50847503 50847595 -126126545 + MIR SINE MIR 16 115 -93 257 146 83 0 chrX 50848009 50848057 -126126083 - L2 LINE L2 -1 3312 3261 326 297 39 16 chrX 50848573 50848701 -126125439 - MIR SINE MIR -83 179 49 392 250 0 0 chrX 50848906 50848982 -126125158 + MIR SINE MIR 18 93 -169 2114 116 0 49 chrX 50849060 50849388 -126124752 + AluSx SINE Alu 1 312 0 206 250 58 0 chrX 50849472 50849524 -126124616 - L2 LINE L2 -1 3271 3217 182 368 80 40 chrX 50850525 50850650 -126123490 - MIR3 SINE MIR -39 169 40 32 75 0 0 chrX 50850885 50850952 -126123188 + AT_rich Low_complexity Low_complexity 1 67 0 365 319 0 0 chrX 50851070 50851161 -126122979 + MIR SINE MIR 35 125 -137 367 171 0 0 chrX 50851292 50851374 -126122766 - L1MB3 LINE L1 -1 6182 6101 223 325 156 13 chrX 50851578 50851732 -126122408 + MIR3 SINE MIR 18 193 -15 226 321 0 36 chrX 50851743 50851827 -126122313 + MIR SINE MIR 18 98 -110 1096 210 56 13 chrX 50851834 50852025 -126122115 + MLT2C1 LTR ERVL 7 188 -276 6881 55 5 2 chrX 50852025 50853206 -126120934 + L1PA6 LINE L1 4958 6140 -14 1096 210 56 13 chrX 50853206 50853442 -126120698 + MLT2C1 LTR ERVL 188 464 0 256 200 193 133 chrX 50853479 50853584 -126120556 - L2 LINE L2 -27 3286 3170 388 86 12 37 chrX 50853584 50853665 -126120475 + L1MA4 LINE L1 6222 6300 0 256 200 193 133 chrX 50853665 50853694 -126120446 - L2 LINE L2 -143 3170 3144 439 295 81 7 chrX 50853936 50854085 -126120055 + MIR SINE MIR 28 187 -75 24 0 0 0 chrX 50855191 50855215 -126118925 + AT_rich Low_complexity Low_complexity 1 24 0 592 226 0 32 chrX 50855641 50855765 -126118375 - L2 LINE L2 -5 3308 3189 664 294 91 45 chrX 50855814 50856277 -126117863 - L2 LINE L2 -121 3192 2723 303 340 39 26 chrX 50856254 50856407 -126117733 + MIR3 SINE MIR 26 180 -28 * 847 159 0 8 chrX 50856791 50856917 -126117223 + FLAM_C SINE Alu 1 125 -18 1501 254 96 13 chrX 50857967 50858480 -126115660 + L2 LINE L2 2753 3313 0 209 356 59 25 chrX 50858532 50858650 -126115490 + MIR SINE MIR 38 159 -103 259 289 36 20 chrX 50858771 50859039 -126115101 - L1MC/D LINE L1 -759 5395 5254 835 334 157 28 chrX 50859092 50860312 -126113828 - L1MC/D LINE L1 -925 5221 3819 1429 193 30 24 chrX 50860312 50860607 -126113533 + AluSx SINE Alu 1 297 -15 835 334 157 28 chrX 50860607 50860655 -126113485 - L1MC/D LINE L1 -2327 3819 3779 662 278 125 7 chrX 50860669 50860964 -126113176 + MER46C DNA MER2_type 8 337 -1 290 330 152 22 chrX 50860985 50861222 -126112918 - L2 LINE L2 -213 3059 2793 244 216 81 0 chrX 50863393 50863467 -126110673 - MER103 DNA DNA -75 91 12 203 326 62 93 chrX 50863595 50863724 -126110416 + MIR SINE MIR 17 141 -67 685 302 54 16 chrX 50864248 50864490 -126109650 - MIR SINE MIR -10 252 2 497 317 24 18 chrX 50864617 50864781 -126109359 + MIR SINE MIR 28 192 -70 770 107 0 0 chrX 50864874 50864986 -126109154 - L1P LINE L1 -1518 4628 4517 284 214 43 43 chrX 50864988 50865058 -126109082 - MIR SINE MIR -74 188 119 235 407 91 9 chrX 50865193 50865424 -126108716 + L2 LINE L2 2725 2974 -340 823 278 174 20 chrX 50865475 50866151 -126107989 - L2 LINE L2 0 3313 2535 251 291 26 143 chrX 50866138 50866327 -126107813 + L2 LINE L2 3015 3181 -91 * 186 43 0 0 chrX 50866340 50866363 -126107777 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1860 164 14 7 chrX 50866365 50866652 -126107488 - AluJb SINE Alu -23 289 1 213 271 17 34 chrX 50867128 50867187 -126106953 + L2 LINE L2 3136 3193 -79 2150 148 29 3 chrX 50867232 50867616 -126106524 + L1MA2 LINE L1 5464 5857 -447 3417 127 27 17 chrX 50867616 50868216 -126105924 + L1MA4 LINE L1 5688 6294 -6 1667 209 7 42 chrX 50868304 50868734 -126105406 - L1ME3A LINE L1 0 6170 5756 336 261 165 0 chrX 50868757 50868872 -126105268 - MIR SINE MIR -49 213 80 341 252 102 28 chrX 50869114 50869259 -126104881 + MIR3 SINE MIR 33 192 -16 443 233 23 30 chrX 50869544 50869677 -126104463 - MLT1J LTR MaLR -379 132 1 566 327 132 16 chrX 50870704 50871007 -126103133 + L2 LINE L2 2934 3271 -1 581 108 16 31 chrX 50871009 50871138 -126103002 + (GGAA)n Simple_repeat Simple_repeat 3 129 0 361 83 0 33 chrX 50871238 50871298 -126102842 + (GGGGA)n Simple_repeat Simple_repeat 1 58 0 245 209 0 0 chrX 50871360 50871403 -126102737 + MIR SINE MIR 68 110 -152 * 263 335 89 19 chrX 50871402 50871560 -126102580 + MIR3 SINE MIR 40 208 0 * 269 300 14 0 chrX 50871557 50871627 -126102513 - L2 LINE L2 -9 3263 3193 205 176 0 0 chrX 50871653 50871687 -126102453 + MIR SINE MIR 114 147 -115 472 285 8 0 chrX 50871754 50871877 -126102263 + MIR3 SINE MIR 85 208 0 189 107 0 0 chrX 50872277 50872305 -126101835 + (TC)n Simple_repeat Simple_repeat 1 28 0 219 125 10 52 chrX 50872357 50872453 -126101687 + (TA)n Simple_repeat Simple_repeat 2 93 0 364 252 16 73 chrX 50872927 50873050 -126101090 + MIR SINE MIR 20 135 -73 1006 246 14 0 chrX 50873118 50873338 -126100802 - MER58A DNA MER1_type -1 223 1 443 339 185 6 chrX 50873398 50873844 -126100296 + L3 LINE CR1 991 1567 -10 436 288 96 80 chrX 50874681 50874931 -126099209 + MIR SINE MIR 8 261 -1 429 358 54 9 chrX 50874938 50875159 -126098981 + MIR SINE MIR 20 250 -12 266 312 213 0 chrX 50875637 50875778 -126098362 + MIR3 SINE MIR 31 201 -7 686 268 38 19 chrX 50876292 50876501 -126097639 - L2 LINE L2 -1133 2181 1969 1671 223 65 33 chrX 50878036 50878388 -126095752 + L1MDb LINE L1 593 967 -5442 3825 174 33 33 chrX 50878388 50879173 -126094967 + LTR1 LTR ERV1 1 785 0 1671 223 65 33 chrX 50879173 50879309 -126094831 + L1MDb LINE L1 967 1097 -5312 * 12682 147 24 28 chrX 50879308 50881339 -126092801 - L1P LINE L1 -3103 3043 1022 2217 112 0 0 chrX 50881339 50881635 -126092505 - AluY SINE Alu -15 296 1 12682 147 24 28 chrX 50881635 50882056 -126092084 - L1P LINE L1 -5124 1022 601 2648 233 90 38 chrX 50882157 50883965 -126090175 + L1MDb LINE L1 1167 3069 -3337 6994 159 15 19 chrX 50883974 50885300 -126088840 - Ricksha DNA DNA -10 3236 1821 1072 208 42 8 chrX 50885298 50885538 -126088602 - Ricksha DNA DNA -2957 289 42 * 4228 256 63 28 chrX 50885554 50886557 -126087583 + L1MDb LINE L1 3065 4156 -2250 2105 128 10 0 chrX 50886557 50886846 -126087294 + AluSg SINE Alu 3 294 -16 4228 256 63 28 chrX 50886846 50887586 -126086554 + L1MDb LINE L1 4156 4869 -1537 * 15480 178 45 44 chrX 50887584 50890194 -126083946 + L1M1 LINE L1 14 2620 -4945 7233 47 1 0 chrX 50890194 50891126 -126083014 + L1PA6 LINE L1 5217 6149 -5 515 160 10 10 chrX 50891127 50891227 -126082913 - Tigger1 DNA MER2_type -67 2351 2252 15480 178 45 44 chrX 50891227 50891634 -126082506 + L1M1 LINE L1 2619 3135 -4430 6013 158 41 4 chrX 50891652 50893115 -126081025 - L1MA1 LINE L1 0 6302 4800 25 0 0 0 chrX 50893129 50893154 -126080986 + AT_rich Low_complexity Low_complexity 1 25 0 6263 151 14 17 chrX 50893154 50894472 -126079668 - L1MA1 LINE L1 0 7721 6416 323 77 0 19 chrX 50894472 50894524 -126079616 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 6295 97 29 2 chrX 50894524 50896113 -126078027 - L1PA8 LINE L1 -24 6148 4518 23554 125 95 45 chrX 50896213 50899943 -126074197 - L1PA3 LINE L1 -108 6047 1923 2111 121 0 3 chrX 50899943 50900232 -126073908 - AluSx SINE Alu -24 288 1 23554 125 95 45 chrX 50900232 50902244 -126071896 - L1PA3 LINE L1 -4232 1923 12 328 210 12 12 chrX 50902282 50902366 -126071774 - MLT1D LTR MaLR -207 298 229 7702 199 20 4 chrX 50902366 50904016 -126070124 - L1MA1 LINE L1 -1147 6418 4743 14458 203 37 19 chrX 50904129 50905663 -126068477 - L1MA1 LINE L1 -3861 3704 2199 185 0 40 0 chrX 50905663 50905688 -126068452 + (TC)n Simple_repeat Simple_repeat 1 26 0 14458 203 37 19 chrX 50905688 50906476 -126067664 - L1MA1 LINE L1 -5366 2199 1427 2518 125 5 8 chrX 50906476 50906852 -126067288 - THE1C LTR MaLR 0 375 1 14458 203 37 19 chrX 50906852 50907804 -126066336 - L1MA1 LINE L1 -6138 1427 27 2749 180 22 6 chrX 50907808 50908668 -126065472 + L1M1 LINE L1 3123 3995 -3570 358 113 0 0 chrX 50908835 50908897 -126065243 - L1M LINE L1 -981 5321 5260 * 1465 263 45 13 chrX 50908870 50909341 -126064799 - L1 LINE L1 -3094 3052 2567 1836 232 66 8 chrX 50910168 50910686 -126063454 - L1ME1 LINE L1 -169 5997 5450 6495 126 15 29 chrX 50910761 50911848 -126062292 + MER11C LTR ERVK 1 1071 0 1866 204 14 8 chrX 50912198 50912561 -126061579 + MLT1A1 LTR MaLR 1 365 0 1407 205 6 31 chrX 50912563 50912792 -126061348 + MLT1A1-int LTR MaLR 2 222 -1513 2399 186 17 2 chrX 50912792 50913212 -126060928 - MSTB LTR MaLR 0 426 1 1407 205 6 31 chrX 50913212 50913309 -126060831 + MLT1A1-int LTR MaLR 222 320 -1415 1204 239 16 4 chrX 50913458 50913759 -126060381 + MLT1A1-int LTR MaLR 286 600 -771 257 54 71 0 chrX 50913759 50913815 -126060325 + (TA)n Simple_repeat Simple_repeat 1 60 0 3380 211 100 104 chrX 50913822 50914002 -126060138 + MLT1A1-int LTR MaLR 592 771 -964 1681 189 14 0 chrX 50914002 50914287 -126059853 - AluJb SINE Alu -23 289 1 3380 211 100 104 chrX 50914287 50915255 -126058885 + MLT1A1-int LTR MaLR 771 1735 0 1060 233 58 4 chrX 50915315 50915555 -126058585 + MLT1A1 LTR MaLR 113 365 0 379 352 50 11 chrX 50915775 50915954 -126058186 - MIR3 SINE MIR 0 208 23 791 278 63 40 chrX 50916280 50916532 -126057608 - MIR SINE MIR 0 262 5 553 335 117 45 chrX 50916756 50916985 -126057155 - L2 LINE L2 -1 3271 3003 1957 143 10 3 chrX 50916985 50917292 -126056848 - AluSg1 SINE Alu 0 309 1 553 335 117 45 chrX 50917292 50917438 -126056702 - L2 LINE L2 -269 3003 2869 790 290 16 0 chrX 50917471 50917657 -126056483 - MIR SINE MIR -56 206 18 225 280 172 27 chrX 50917660 50917846 -126056294 - L2 LINE L2 -523 2791 2579 388 310 16 8 chrX 50918098 50918227 -126055913 + LTR33 LTR ERVL 1 130 -391 457 332 53 5 chrX 50918283 50918470 -126055670 - MIR SINE MIR -15 247 52 376 250 38 38 chrX 50918548 50918680 -126055460 + MIR SINE MIR 49 180 -82 398 250 114 27 chrX 50918987 50919171 -126054969 - MER112 DNA MER1_type -21 239 40 6042 169 18 8 chrX 50919250 50919427 -126054713 - L1MA2 LINE L1 0 6304 6130 2060 144 3 3 chrX 50919427 50919739 -126054401 + AluSx SINE Alu 1 312 0 6042 169 18 8 chrX 50919739 50921610 -126052530 - L1MA2 LINE L1 -174 6130 4234 828 170 0 0 chrX 50921642 50921783 -126052357 + L1PB1 LINE L1 187 327 -6536 454 192 0 0 chrX 50921787 50921865 -126052275 + L1PA10 LINE L1 6079 6156 -12 43 20 0 0 chrX 50921884 50921934 -126052206 + AT_rich Low_complexity Low_complexity 1 50 0 1402 110 34 0 chrX 50922072 50922281 -126051859 - L1PA10 LINE L1 -49 6119 5904 848 274 46 6 chrX 50922290 50922649 -126051491 + L2 LINE L2 2698 3065 -248 1331 209 75 68 chrX 50922650 50923181 -126050959 + L1MC4 LINE L1 7501 8035 -7 268 287 9 9 chrX 50923199 50923307 -126050833 + L1MC4a LINE L1 6361 6468 -1340 207 0 0 0 chrX 50923463 50923486 -126050654 + (A)n Simple_repeat Simple_repeat 1 23 0 13109 150 107 10 chrX 50923514 50924834 -126049306 + L1PB1 LINE L1 407 1598 -5264 2258 101 0 3 chrX 50924834 50925130 -126049010 + AluY SINE Alu 1 295 -16 13109 150 107 10 chrX 50925130 50927131 -126047009 + L1PB1 LINE L1 1598 4054 -2808 5190 167 21 41 chrX 50927120 50929008 -126045132 + L1PB1 LINE L1 5015 6867 0 * 293 269 0 0 chrX 50929228 50929306 -126044834 - L1 LINE L1 -1918 4228 4151 1145 302 83 18 chrX 50929313 50929817 -126044323 - L2 LINE L2 -777 2537 2001 351 0 0 0 chrX 50929817 50929856 -126044284 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2616 32 0 0 chrX 50929858 50930167 -126043973 - L1PA3 LINE L1 -5 6150 5842 4690 202 32 4 chrX 50930182 50931240 -126042900 - L1MB1 LINE L1 -1436 4710 3623 4294 190 28 28 chrX 50931246 50931485 -126042655 + L1MB1 LINE L1 4722 4959 -1209 3653 158 33 28 chrX 50931485 50932208 -126041932 + L1MA7 LINE L1 5555 6282 -9 4294 190 28 28 chrX 50932208 50933411 -126040729 + L1MB1 LINE L1 4959 6165 -3 1115 313 99 13 chrX 50933418 50933965 -126040175 - L2 LINE L2 -1320 1994 1401 29 0 0 0 chrX 50934543 50934572 -126039568 + AT_rich Low_complexity Low_complexity 1 29 0 6694 65 2 0 chrX 50934573 50936157 -126037983 - L1PA7 LINE L1 -11 6143 4549 23885 137 58 27 chrX 50936267 50937976 -126036164 - L1P3 LINE L1 -743 5718 4064 750 45 27 9 chrX 50937976 50938087 -126036053 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 23885 137 58 27 chrX 50938087 50941606 -126032534 - L1P3 LINE L1 -2397 4064 227 315 262 65 47 chrX 50941795 50941902 -126032238 - L2 LINE L2 -16 3256 3148 404 303 30 8 chrX 50942179 50942311 -126031829 + MIR SINE MIR 59 193 -69 503 300 86 42 chrX 50943336 50943649 -126030491 + L2 LINE L2 2461 2787 -527 215 152 65 0 chrX 50943757 50943803 -126030337 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 777 277 63 8 chrX 50943860 50944098 -126030042 - MIR SINE MIR 0 262 12 340 369 75 66 chrX 50944118 50944465 -126029675 + L2 LINE L2 2911 3260 -12 335 274 0 21 chrX 50944486 50944581 -126029559 - MER20B DNA MER1_type -604 179 87 306 325 62 19 chrX 50944700 50944860 -126029280 + MIR SINE MIR 8 174 -88 272 211 197 0 chrX 50945030 50945106 -126029034 + MIR SINE MIR 158 248 -14 22 0 0 0 chrX 50945155 50945177 -126028963 + AT_rich Low_complexity Low_complexity 1 22 0 330 226 95 12 chrX 50945311 50945395 -126028745 - L2 LINE L2 -1 3312 3222 39665 63 5 1 chrX 50945397 50951518 -126022622 + L1PA5 LINE L1 3 6150 -4 642 220 95 116 chrX 50951582 50951904 -126022236 - L2 LINE L2 -179 3134 2798 271 292 0 0 chrX 50951909 50952005 -126022135 - L1MDa LINE L1 -4368 2038 1943 1744 225 102 27 chrX 50952010 50952752 -126021388 - L1MDa LINE L1 -4517 1889 1092 * 5693 95 24 2 chrX 50952731 50953601 -126020539 - L1PA13 LINE L1 -5 6418 5530 848 223 14 5 chrX 50953640 50953851 -126020289 - L1MDa LINE L1 -5289 1120 908 1097 127 0 0 chrX 50953868 50954026 -126020114 - AluSc SINE Alu 0 309 152 832 254 34 34 chrX 50954031 50954052 -126020088 - L1MDa LINE L1 -5494 915 895 2187 96 0 0 chrX 50954052 50954381 -126019759 - AluY SINE Alu 0 329 1 832 254 34 34 chrX 50954381 50955065 -126019075 - L1MDa LINE L1 -5514 895 46 1369 277 57 26 chrX 50955093 50955551 -126018589 - L2 LINE L2 -624 2690 2219 1758 132 14 0 chrX 50955587 50955894 -126018246 - L1M2 LINE L1 -694 5618 5307 5969 72 4 2 chrX 50955958 50957426 -126016714 - L1PA7 LINE L1 -205 5949 4481 608 311 54 50 chrX 50958487 50958911 -126015229 - MLT1J1 LTR MaLR -20 426 1 1745 185 0 16 chrX 50959376 50959684 -126014456 + AluJo SINE Alu 1 303 -9 261 57 0 0 chrX 50959748 50959783 -126014357 + (CTG)n Simple_repeat Simple_repeat 2 36 0 225 0 0 0 chrX 50959871 50959896 -126014244 + (TC)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chrX 50959895 50959917 -126014223 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 225 0 0 0 chrX 50959916 50959941 -126014199 + (GA)n Simple_repeat Simple_repeat 2 26 0 1549 193 11 0 chrX 50959941 50960216 -126013924 - AluJb SINE Alu -34 278 1 209 33 33 0 chrX 50960218 50960248 -126013892 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chrX 50960343 50960366 -126013774 + AT_rich Low_complexity Low_complexity 1 23 0 767 275 55 30 chrX 50960483 50960719 -126013421 + MIR SINE MIR 17 258 -4 283 374 26 13 chrX 50961272 50961427 -126012713 + L2 LINE L2 2570 2726 -588 298 339 15 15 chrX 50961525 50961655 -126012485 - MIR3 SINE MIR -45 163 34 577 306 105 18 chrX 50961844 50962063 -126012077 - MIR SINE MIR 0 262 25 239 357 78 8 chrX 50962539 50962668 -126011472 + MIR SINE MIR 1 138 -124 457 238 112 42 chrX 50962730 50962873 -126011267 + MIR3 SINE MIR 42 194 -14 2057 206 47 18 chrX 50962898 50963387 -126010753 - MLT1D LTR MaLR -2 503 1 239 305 30 46 chrX 50963421 50963552 -126010588 + L3 LINE CR1 898 1026 -551 12691 175 30 28 chrX 50963557 50968731 -126005409 + L1MA1 LINE L1 549 6133 -1588 2084 141 0 10 chrX 50968731 50969035 -126005105 + AluSx SINE Alu 1 301 -11 12691 175 30 28 chrX 50969035 50970628 -126003512 + L1MA1 LINE L1 6133 7721 0 483 363 64 24 chrX 50970741 50970992 -126003148 + MIR SINE MIR 1 261 -1 399 232 1 108 chrX 50971539 50971660 -126002480 + MER5A DNA MER1_type 1 111 -78 1164 204 50 89 chrX 50971660 50972141 -126001999 + MLT2C2 LTR ERVL 1 462 -2 399 232 1 108 chrX 50972141 50972189 -126001951 + MER5A DNA MER1_type 111 163 -26 298 268 7 130 chrX 50972243 50972381 -126001759 - L3 LINE CR1 -67 1510 1390 1876 281 13 13 chrX 50972382 50972929 -126001211 - MLT1H1 LTR MaLR 0 555 9 279 146 21 0 chrX 50972944 50972992 -126001148 - L3 LINE CR1 -194 1383 1335 26217 129 9 25 chrX 50973611 50979509 -125994631 + L1PA8 LINE L1 629 6471 -16 518 141 0 0 chrX 50980016 50980101 -125994039 + L1PA16 LINE L1 6069 6153 -13 216 274 0 0 chrX 50980175 50980226 -125993914 - L3b LINE CR1 -3 1580 1530 313 286 35 98 chrX 50981252 50981539 -125992601 + L3 LINE CR1 739 1007 -570 26 30 0 0 chrX 50981590 50981623 -125992517 + AT_rich Low_complexity Low_complexity 1 33 0 463 194 19 0 chrX 50981724 50981832 -125992308 + MER103 DNA DNA 55 164 -2 625 331 160 3 chrX 50981938 50982282 -125991858 + L3 LINE CR1 1085 1482 -95 376 177 0 0 chrX 50982401 50982463 -125991677 - MER5A DNA MER1_type -3 186 125 929 228 60 81 chrX 50982463 50982803 -125991337 + L1M4 LINE L1 18 364 -6176 297 51 0 0 chrX 50982803 50982842 -125991298 + (TA)n Simple_repeat Simple_repeat 2 40 0 267 54 0 0 chrX 50982843 50982880 -125991260 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 929 228 60 81 chrX 50982880 50983007 -125991133 + L1M4 LINE L1 363 477 -6063 381 235 20 34 chrX 50983892 50984041 -125990099 + L1M4 LINE L1 983 1129 -5414 227 240 83 0 chrX 50984043 50984115 -125990025 + L1M4 LINE L1 4011 4088 -2452 2355 220 50 40 chrX 50984171 50984856 -125989284 + L1M4 LINE L1 5041 5750 -828 645 150 39 0 chrX 50984856 50984983 -125989157 + L1MA6 LINE L1 6163 6294 -6 2355 220 50 40 chrX 50984983 50985409 -125988731 + L1M4 LINE L1 5750 6171 -407 * 2428 166 43 13 chrX 50985407 50985915 -125988225 + L1P5 LINE L1 4971 5504 -647 219 36 0 0 chrX 50985915 50985943 -125988197 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2428 166 43 13 chrX 50985943 50986154 -125987986 + L1P5 LINE L1 5504 5707 -444 2708 175 33 17 chrX 50986361 50987438 -125986702 - L1P5 LINE L1 -330 5821 4729 * 2739 201 16 0 chrX 50987437 50988068 -125986072 + L1P5 LINE L1 4096 4736 -1410 1668 277 87 45 chrX 50988476 50989191 -125984949 + L1M2b LINE L1 385 1129 -6437 304 293 37 42 chrX 50989203 50989493 -125984647 + L1M2b LINE L1 1511 2073 -5493 718 182 44 11 chrX 50989607 50989788 -125984352 + L1MA2 LINE L1 5963 6149 -155 * 1167 232 48 40 chrX 50989782 50990157 -125983983 + L1M2b LINE L1 14 391 -7174 * 4771 203 21 10 chrX 50990150 50991775 -125982365 + L1M2b LINE L1 3221 4869 -2696 966 251 0 8 chrX 50992036 50992295 -125981845 + L1MB8 LINE L1 5903 6159 -19 1980 144 32 35 chrX 50992392 50992768 -125981372 + THE1C LTR MaLR 1 375 0 487 198 9 0 chrX 50992778 50992884 -125981256 + MLT1B LTR MaLR 2 108 -282 3602 268 39 18 chrX 50992899 50994130 -125980010 + L1M1 LINE L1 1787 3043 -4523 7046 204 30 5 chrX 50994137 50997629 -125976511 + L1PA15 LINE L1 9 3883 -2979 24675 38 5 2 chrX 50997737 51001731 -125972409 + L1PA3 LINE L1 2146 6152 -3 1255 235 78 62 chrX 51001759 51002267 -125971873 - MLT1E1 LTR MaLR 0 654 56 1864 141 18 12 chrX 51002314 51002654 -125971486 - L1MA8 LINE L1 -1 6290 5949 690 283 64 33 chrX 51002654 51003046 -125971094 - L1ME4a LINE L1 -49 6072 5669 822 210 5 5 chrX 51003048 51003234 -125970906 - L1MA10 LINE L1 -2 6332 6147 272 265 20 20 chrX 51003431 51003529 -125970611 - L1ME4a LINE L1 -462 5659 5562 23 54 0 0 chrX 51004069 51004106 -125970034 + AT_rich Low_complexity Low_complexity 1 37 0 242 260 240 0 chrX 51005223 51005319 -125968821 - MIR SINE MIR -25 237 119 460 243 44 22 chrX 51005628 51005764 -125968376 - MIR SINE MIR 0 262 124 919 295 26 8 chrX 51005790 51006024 -125968116 + L2 LINE L2 2837 3074 -239 3832 185 5 21 chrX 51006031 51006913 -125967227 + L1PA15 LINE L1 4638 5504 -1358 15402 69 1 3 chrX 51007013 51009103 -125965037 - L1P LINE L1 -4053 2093 9 1276 233 66 106 chrX 51009110 51009809 -125964331 + L1MC4 LINE L1 7367 8037 -5 181 313 0 30 chrX 51009831 51009898 -125964242 + MIR SINE MIR 186 250 -12 25 31 0 0 chrX 51011128 51011160 -125962980 + AT_rich Low_complexity Low_complexity 1 32 0 397 325 62 84 chrX 51011252 51011705 -125962435 - L2 LINE L2 -838 2476 2034 924 209 110 30 chrX 51011996 51012397 -125961743 - L1MC5 LINE L1 -34 7927 7495 372 198 81 45 chrX 51012520 51012631 -125961509 - MIR SINE MIR -4 258 144 223 243 43 29 chrX 51012741 51012811 -125961329 + L2 LINE L2 3223 3293 -20 768 271 64 121 chrX 51012811 51013357 -125960783 - MLT1K LTR MaLR -70 518 4 580 293 26 53 chrX 51013399 51013665 -125960475 + MIR SINE MIR 2 260 -2 457 258 88 41 chrX 51014146 51014340 -125959800 + MIR SINE MIR 48 250 -12 29 35 0 35 chrX 51015140 51015171 -125958969 + AT_rich Low_complexity Low_complexity 1 32 -24 2188 133 0 3 chrX 51015171 51015509 -125958631 - L1PB1 LINE L1 -1 6150 5814 2186 59 0 0 chrX 51015509 51015779 -125958361 + L1PA8 LINE L1 5890 6159 -13 29 35 0 35 chrX 51015779 51015804 -125958336 + AT_rich Low_complexity Low_complexity 30 56 0 4222 147 10 5 chrX 51015907 51016886 -125957254 + L1PA15 LINE L1 5673 6655 -226 722 284 78 12 chrX 51016935 51017178 -125956962 + MIR SINE MIR 1 259 -3 423 347 115 22 chrX 51017460 51017921 -125956219 + L2 LINE L2 1705 2208 -1106 640 256 74 11 chrX 51017923 51018099 -125956041 + MIR SINE MIR 5 191 -71 609 354 11 57 chrX 51018105 51018577 -125955563 + L2 LINE L2 2251 2700 -614 235 191 0 0 chrX 51018896 51018938 -125955202 + L2 LINE L2 3184 3225 -88 191 319 14 14 chrX 51019135 51019204 -125954936 + L3 LINE CR1 1509 1577 0 650 266 51 39 chrX 51019504 51019760 -125954380 + MIR SINE MIR 1 259 -3 295 277 98 18 chrX 51019818 51019930 -125954210 - MIR SINE MIR -79 183 63 204 213 0 0 chrX 51020635 51020696 -125953444 + CT-rich Low_complexity Low_complexity 2 62 0 234 105 0 0 chrX 51020696 51020734 -125953406 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 250 23 0 chrX 51020844 51020888 -125953252 - L2 LINE L2 -10 3262 3218 * 211 262 178 9 chrX 51020860 51020967 -125953173 - MIR SINE MIR -21 241 117 382 225 54 36 chrX 51021079 51021190 -125952950 - MIR SINE MIR -36 226 114 415 269 0 0 chrX 51021190 51021294 -125952846 + U6 snRNA snRNA 2 105 -2 484 222 39 33 chrX 51021297 51021477 -125952663 + L1ME3A LINE L1 5782 5962 -208 21 0 0 0 chrX 51021578 51021599 -125952541 + AT_rich Low_complexity Low_complexity 1 21 0 359 300 63 79 chrX 51021966 51022219 -125951921 + MIR SINE MIR 1 249 -13 648 317 28 14 chrX 51022891 51023116 -125951024 + MIR SINE MIR 30 256 -6 654 271 33 9 chrX 51023277 51023487 -125950653 + MER58C DNA MER1_type 1 215 0 368 294 72 33 chrX 51024127 51024307 -125949833 + MIR SINE MIR 70 256 -6 3692 246 69 28 chrX 51025341 51026542 -125947598 + L1ME3A LINE L1 3664 4813 -1357 1671 166 0 33 chrX 51026542 51026849 -125947291 - AluJo SINE Alu -15 297 1 3692 246 69 28 chrX 51026849 51027662 -125946478 + L1ME3A LINE L1 4813 5794 -376 1664 96 4 16 chrX 51027662 51027911 -125946229 + L1PA8A LINE L1 5886 6131 0 3692 246 69 28 chrX 51027911 51028293 -125945847 + L1ME3A LINE L1 5794 6159 -11 908 230 180 12 chrX 51028318 51028657 -125945483 - MLT1D LTR MaLR -8 497 102 1032 289 96 5 chrX 51029424 51029811 -125944329 + L2 LINE L2 2291 2712 -602 180 267 0 0 chrX 51029885 51029945 -125944195 + GA-rich Low_complexity Low_complexity 2 61 0 354 123 0 0 chrX 51030744 51030801 -125943339 + (CA)n Simple_repeat Simple_repeat 2 58 0 731 291 207 14 chrX 51031116 51031618 -125942522 + L2 LINE L2 2705 3312 -1 278 355 11 54 chrX 51031640 51031826 -125942314 - L3 LINE CR1 -9 1568 1391 1533 222 113 0 chrX 51031840 51032237 -125941903 + L1MDa LINE L1 41 482 -6058 13020 146 24 3 chrX 51032527 51034690 -125939450 + Tigger1 DNA MER2_type 209 2416 -2 694 203 49 12 chrX 51034693 51034883 -125939257 - L1P4 LINE L1 -497 5669 5473 831 85 184 0 chrX 51034900 51035041 -125939099 - L1MA2 LINE L1 -12 6292 6126 6480 149 13 8 chrX 51035052 51035729 -125938411 - L1MA1 LINE L1 -4 6298 5626 1621 118 201 25 chrX 51035729 51036093 -125938047 - MSTA LTR MaLR 0 428 1 6480 149 13 8 chrX 51036093 51037166 -125936974 - L1MA1 LINE L1 -676 5626 4537 5481 183 15 12 chrX 51037269 51039224 -125934916 + L1MA5 LINE L1 4331 6298 -2 236 253 320 0 chrX 51039230 51039305 -125934835 + MER5A DNA MER1_type 61 159 -30 443 205 140 18 chrX 51039315 51039486 -125934654 - LTR37B LTR ERV1 -210 258 67 345 217 96 70 chrX 51039841 51039998 -125934142 - MER117 DNA MER1_type -5 192 32 902 164 114 41 chrX 51042009 51042228 -125931912 + MER46A DNA MER2_type 1 235 -1 201 154 0 0 chrX 51042559 51042598 -125931542 + (CATA)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chrX 51042625 51042651 -125931489 + AT_rich Low_complexity Low_complexity 1 26 0 266 282 23 38 chrX 51042757 51042888 -125931252 - L1MC/D LINE L1 -2019 5789 5661 459 184 18 53 chrX 51042964 51043078 -125931062 + L1PA16 LINE L1 6048 6157 -9 344 285 8 32 chrX 51043092 51043215 -125930925 - L1MC/D LINE L1 -578 5588 5469 31 44 0 0 chrX 51043223 51043268 -125930872 + AT_rich Low_complexity Low_complexity 1 45 0 1420 102 27 62 chrX 51043269 51043525 -125930615 - L1MA5A LINE L1 -21 6276 6030 460 211 29 0 chrX 51043529 51043633 -125930507 + L1P LINE L1 5058 5164 -982 * 2691 169 10 0 chrX 51043623 51044265 -125929875 - L1P4 LINE L1 -450 5716 5068 311 301 53 23 chrX 51044273 51044406 -125929734 - L1MC/D LINE L1 -1225 4921 4785 307 336 64 41 chrX 51044406 51044530 -125929610 - L1MC/D LINE L1 -2810 3336 3203 1381 209 87 27 chrX 51044530 51044898 -125929242 - MSTD LTR MaLR -3 393 4 307 336 64 41 chrX 51044898 51044993 -125929147 - L1MC/D LINE L1 -2943 3203 3112 216 97 0 0 chrX 51045603 51045634 -125928506 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 277 213 12 75 chrX 51045705 51045785 -125928355 + L2 LINE L2 3198 3272 0 379 359 58 60 chrX 51046550 51046915 -125927225 - L2 LINE L2 -26 3246 2883 439 343 50 6 chrX 51046972 51047153 -125926987 - L2 LINE L2 -562 2752 2564 251 324 152 19 chrX 51047203 51047413 -125926727 + L2 LINE L2 1720 1957 -1357 11657 30 3 0 chrX 51047418 51049580 -125924560 - L1PA2 LINE L1 -2 6153 3987 849 47 0 0 chrX 51049580 51049687 -125924453 + L1PA2 LINE L1 3885 3991 -2155 639 297 5 27 chrX 51049688 51049910 -125924230 + L2 LINE L2 1989 2205 -1109 319 196 0 54 chrX 51049934 51050026 -125924114 - HsTC2 DNA Tc2 -17 1881 1795 641 320 111 42 chrX 51050049 51050698 -125923442 + L2 LINE L2 2372 3068 -204 4335 187 37 9 chrX 51050775 51051677 -125922463 + L1MC2 LINE L1 5409 6335 -9 199 324 176 9 chrX 51051744 51051852 -125922288 + L2 LINE L2 3188 3313 0 * 436 319 151 18 chrX 51051837 51052169 -125921971 - L2 LINE L2 -789 2525 2150 29629 123 14 57 chrX 51052169 51058626 -125915514 + L1PA8 LINE L1 2 6171 -1 4619 131 16 13 chrX 51058621 51059383 -125914757 + L1PB4 LINE L1 5385 6148 -8 * 22 0 0 0 chrX 51059403 51059425 -125914715 + AT_rich Low_complexity Low_complexity 1 22 0 836 261 40 22 chrX 51059595 51059821 -125914319 + MIR SINE MIR 33 262 0 220 203 62 31 chrX 51060224 51060288 -125913852 - L2 LINE L2 -668 2646 2581 1638 104 43 4 chrX 51060354 51060585 -125913555 - AluSq SINE Alu -1 312 73 2268 67 11 0 chrX 51060585 51060867 -125913273 - AluY SINE Alu -12 299 13 242 301 27 0 chrX 51060868 51060941 -125913199 - L2 LINE L2 0 3313 3239 422 243 85 73 chrX 51061041 51061218 -125912922 - MIR3 SINE MIR -6 202 24 219 69 0 0 chrX 51061386 51061415 -125912725 + (A)n Simple_repeat Simple_repeat 1 29 0 3565 128 73 58 chrX 51061535 51062276 -125911864 - Tigger3(Golem) DNA MER2_type 0 3029 2278 2215 105 0 20 chrX 51062280 51062586 -125911554 + AluSq SINE Alu 1 300 -13 501 172 0 123 chrX 51062586 51062708 -125911432 - Tigger3(Golem) DNA MER2_type -2921 108 2 460 331 20 0 chrX 51063387 51063535 -125910605 + MIR SINE MIR 1 151 -111 553 96 64 0 chrX 51063542 51063636 -125910504 - L1P5 LINE L1 -672 5484 5385 * 5334 114 16 52 chrX 51063631 51064656 -125909484 - L1PA8 LINE L1 0 6172 5184 926 277 13 4 chrX 51064702 51064940 -125909200 - MIR SINE MIR -3 259 20 945 229 66 18 chrX 51064970 51065197 -125908943 + MIR SINE MIR 14 251 -11 221 309 48 12 chrX 51065615 51065699 -125908441 - MIR SINE MIR -130 132 46 248 299 0 15 chrX 51066137 51066204 -125907936 + L2 LINE L2 3199 3264 -8 381 294 62 28 chrX 51066774 51066950 -125907190 + MIR3 SINE MIR 4 191 -62 21 36 0 0 chrX 51067220 51067248 -125906892 + AT_rich Low_complexity Low_complexity 1 28 0 873 100 8 0 chrX 51067440 51067570 -125906570 + L1MA1 LINE L1 6172 6302 0 567 340 128 19 chrX 51067903 51068277 -125905863 - L2 LINE L2 -337 2977 2563 1713 233 69 53 chrX 51068502 51068994 -125905146 - L1MD1 LINE L1 -350 5892 5409 276 30 0 0 chrX 51068994 51069027 -125905113 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1657 173 18 21 chrX 51069031 51069314 -125904826 - AluJo SINE Alu -30 282 1 1713 233 69 53 chrX 51069314 51069383 -125904757 - L1MD1 LINE L1 -835 5407 5317 5317 245 57 16 chrX 51069394 51070599 -125903541 - L1MA5 LINE L1 0 7002 5848 1911 134 20 30 chrX 51070599 51070904 -125903236 + AluSx SINE Alu 4 305 -7 5317 245 57 16 chrX 51070904 51072803 -125901337 - L1MA5 LINE L1 -1154 5848 3761 3588 197 81 11 chrX 51072952 51073793 -125900347 - L1PB4 LINE L1 -3 6153 5254 2997 222 22 12 chrX 51073809 51073955 -125900185 - L1MA5 LINE L1 -3096 3752 3609 1648 106 161 0 chrX 51073955 51074210 -125899930 + AluSq SINE Alu 1 296 -7 2997 222 22 12 chrX 51074210 51074362 -125899778 - L1MA5 LINE L1 -3239 3609 3460 16861 45 1 1 chrX 51074362 51077234 -125896906 - L1PA4 LINE L1 -6 6149 3276 2997 222 22 12 chrX 51077234 51078360 -125895780 - L1MA5 LINE L1 -3388 3460 2313 3296 148 2 12 chrX 51078360 51078922 -125895218 - L1PB1 LINE L1 -3 6148 5593 3322 178 10 16 chrX 51078922 51080032 -125894108 - L1P5 LINE L1 -497 5654 4549 21 36 0 0 chrX 51080251 51080279 -125893861 + AT_rich Low_complexity Low_complexity 1 28 0 347 155 56 0 chrX 51080793 51080864 -125893276 - L1P5 LINE L1 -1576 4570 4496 * 3511 209 25 32 chrX 51080863 51081333 -125892807 - L1 LINE L1 -1699 4447 3976 2887 3 0 0 chrX 51081333 51081644 -125892496 - AluYa5 SINE Alu 0 311 1 3511 209 25 32 chrX 51081644 51082081 -125892059 - L1 LINE L1 -2170 3976 3208 1232 225 15 0 chrX 51282086 51282411 -125691729 - L1 LINE L1 -749 5397 5068 1373 206 87 27 chrX 51282675 51283043 -125691097 - MSTD LTR MaLR -3 393 4 216 97 0 0 chrX 51283747 51283778 -125690362 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 274 213 12 75 chrX 51283849 51283929 -125690211 + L2 LINE L2 3198 3272 0 386 359 58 60 chrX 51284694 51285059 -125689081 - L2 LINE L2 -26 3246 2883 446 343 50 6 chrX 51285116 51285297 -125688843 - L2 LINE L2 -562 2752 2564 258 324 152 19 chrX 51285347 51285557 -125688583 + L2 LINE L2 1720 1957 -1357 5027 22 0 0 chrX 51285562 51286141 -125687999 - L1PA2 LINE L1 -2 6153 5575 2378 225 20 9 chrX 51287028 51288072 -125686068 - L1 LINE L1 -3481 3367 2313 3237 151 2 12 chrX 51288072 51288634 -125685506 - L1PB1 LINE L1 -3 6148 5593 2321 135 2 15 chrX 51288634 51289076 -125685064 - L1P5 LINE L1 -497 5654 5217 7567 181 20 34 chrX 51289217 51290702 -125683438 + L1 LINE L1 3229 4685 -1461 2084 141 0 10 chrX 51290702 51291006 -125683134 + AluSx SINE Alu 1 301 -11 7567 181 20 34 chrX 51291006 51291348 -125682792 + L1 LINE L1 4685 5030 -1116 1235 190 14 0 chrX 51291448 51291669 -125682471 - AluJb SINE Alu -88 224 1 209 33 33 0 chrX 51291671 51291701 -125682439 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chrX 51291796 51291819 -125682321 + AT_rich Low_complexity Low_complexity 1 23 0 233 279 0 0 chrX 51291821 51291882 -125682258 + L1ME4a LINE L1 5966 6026 -95 767 275 55 30 chrX 51291936 51292172 -125681968 + MIR SINE MIR 17 258 -4 270 381 26 13 chrX 51292724 51292879 -125681261 + L2 LINE L2 2570 2726 -588 298 339 15 15 chrX 51292977 51293107 -125681033 - MIR3 SINE MIR -45 163 34 565 311 105 18 chrX 51293296 51293515 -125680625 - MIR SINE MIR 0 262 25 239 357 78 8 chrX 51293991 51294120 -125680020 + MIR SINE MIR 1 138 -124 457 238 112 42 chrX 51294182 51294325 -125679815 + MIR3 SINE MIR 42 194 -14 2002 209 49 18 chrX 51294349 51294837 -125679303 - MLT1D LTR MaLR -2 503 1 239 305 30 46 chrX 51294871 51295002 -125679138 + L3 LINE CR1 898 1026 -551 9411 176 67 18 chrX 51295007 51297273 -125676867 + L1MA1 LINE L1 549 3292 -4273 6345 140 17 1 chrX 51297377 51298697 -125675443 + L1MA1 LINE L1 6380 7721 0 483 363 64 24 chrX 51298810 51299061 -125675079 + MIR SINE MIR 1 261 -1 399 232 1 108 chrX 51299608 51299729 -125674411 + MER5A DNA MER1_type 1 111 -78 1164 204 50 89 chrX 51299729 51300210 -125673930 + MLT2C2 LTR ERVL 1 462 -2 399 232 1 108 chrX 51300210 51300258 -125673882 + MER5A DNA MER1_type 111 163 -26 298 268 7 130 chrX 51300312 51300450 -125673690 - L3 LINE CR1 -67 1510 1390 1876 281 13 13 chrX 51300451 51300998 -125673142 - MLT1H1 LTR MaLR 0 555 9 279 146 21 0 chrX 51301013 51301061 -125673079 - L3 LINE CR1 -194 1383 1335 7257 149 17 41 chrX 51301680 51303602 -125670538 + L1P3 LINE L1 629 2530 -3931 288 212 61 30 chrX 51303706 51303838 -125670302 - L1 LINE L1 -1650 4496 4361 1359 87 0 0 chrX 51303839 51304024 -125670116 - L1PA5 LINE L1 0 6154 5970 381 191 143 0 chrX 51304024 51304108 -125670032 - MER21B LTR ERV1 -547 316 221 17809 43 7 3 chrX 51304117 51306481 -125667659 - L1P LINE L1 -1312 4834 2462 5009 178 19 13 chrX 51306598 51306920 -125667220 + L1MA5 LINE L1 4695 5014 -1286 1928 135 20 30 chrX 51306920 51307224 -125666916 - AluSx SINE Alu -8 304 4 5009 178 19 13 chrX 51307224 51308429 -125665711 + L1MA5 LINE L1 5014 6300 0 1533 218 85 65 chrX 51308440 51308509 -125665631 + L1MD1 LINE L1 5317 5383 -859 1669 173 18 21 chrX 51308509 51308792 -125665348 + AluJo SINE Alu 1 282 -30 276 30 0 0 chrX 51308796 51308829 -125665311 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1533 218 85 65 chrX 51308829 51309319 -125664821 + L1MD1 LINE L1 5385 5892 -350 580 340 128 19 chrX 51309544 51309918 -125664222 + L2 LINE L2 2563 2977 -337 868 100 8 0 chrX 51310251 51310381 -125663759 - L1MA1 LINE L1 0 6302 6172 21 36 0 0 chrX 51310573 51310601 -125663539 + AT_rich Low_complexity Low_complexity 1 28 0 385 294 62 28 chrX 51310871 51311047 -125663093 - MIR3 SINE MIR -62 146 4 245 299 0 15 chrX 51311617 51311684 -125662456 - L2 LINE L2 -8 3264 3199 221 309 48 12 chrX 51312122 51312206 -125661934 + MIR SINE MIR 46 132 -130 941 229 66 18 chrX 51312625 51312852 -125661288 - MIR SINE MIR -11 251 14 930 277 13 4 chrX 51312882 51313120 -125661020 + MIR SINE MIR 20 259 -3 762 205 5 10 chrX 51313166 51313361 -125660779 + L1 LINE L1 5184 5377 -769 19883 54 1 1 chrX 51313373 51316039 -125658101 - L1P LINE L1 -919 5227 2560 1448 125 0 28 chrX 51316148 51316364 -125657776 + AluSq SINE Alu 91 300 -13 464 172 0 123 chrX 51316364 51316486 -125657654 - Tigger3(Golem) DNA MER2_type -2921 108 2 457 331 20 0 chrX 51317165 51317313 -125656827 + MIR SINE MIR 1 151 -111 507 91 68 0 chrX 51317320 51317408 -125656732 - L1P5 LINE L1 -672 5484 5391 4452 62 8 30 chrX 51317409 51318071 -125656069 - L1PA8 LINE L1 0 6172 5526 6654 82 6 0 chrX 51318883 51320011 -125654129 + L1PA8 LINE L1 5020 6156 -16 518 141 0 0 chrX 51320518 51320603 -125653537 + L1PA16 LINE L1 6069 6153 -13 216 274 0 0 chrX 51320677 51320728 -125653412 - L3b LINE CR1 -3 1580 1530 320 289 43 93 chrX 51321740 51322041 -125652099 + L3 LINE CR1 722 1007 -570 26 30 0 0 chrX 51322092 51322125 -125652015 + AT_rich Low_complexity Low_complexity 1 33 0 463 194 19 0 chrX 51322226 51322334 -125651806 + MER103 DNA DNA 55 164 -2 650 329 160 3 chrX 51322440 51322784 -125651356 + L3 LINE CR1 1085 1482 -95 376 177 0 0 chrX 51322903 51322965 -125651175 - MER5A DNA MER1_type -3 186 125 933 228 39 44 chrX 51322965 51323303 -125650837 + L1MDa LINE L1 18 353 -6187 405 39 0 0 chrX 51323305 51323356 -125650784 + (TA)n Simple_repeat Simple_repeat 2 52 0 312 94 0 0 chrX 51323359 51323412 -125650728 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 216 158 0 0 chrX 51323631 51323669 -125650471 + (CATA)n Simple_repeat Simple_repeat 3 40 0 2234 128 11 8 chrX 51323669 51324036 -125650104 + L1PB1 LINE L1 5782 6149 -2 1717 217 3 5 chrX 51324038 51324430 -125649710 + L1MB8 LINE L1 5769 6159 -19 1994 141 32 35 chrX 51324527 51324903 -125649237 + THE1C LTR MaLR 1 375 0 462 208 9 0 chrX 51324913 51325019 -125649121 + MLT1B LTR MaLR 2 108 -282 3598 268 39 18 chrX 51325034 51326265 -125647875 + L1M2c LINE L1 1010 2266 -4523 6876 166 30 8 chrX 51326272 51328800 -125645340 + L1PBa LINE L1 9 2900 -3962 12803 128 19 9 chrX 51328902 51331043 -125643097 - L1P LINE L1 -2678 3468 1307 2534 203 43 13 chrX 51331143 51331743 -125642397 + L1MC2 LINE L1 5718 6335 -9 449 317 150 18 chrX 51331903 51332237 -125641903 - L2 LINE L2 -789 2525 2148 8935 99 4 7 chrX 51332237 51333484 -125640656 + L1P3 LINE L1 1 1243 -5218 201 154 0 0 chrX 51333618 51333657 -125640483 + (TATG)n Simple_repeat Simple_repeat 3 41 0 902 164 114 41 chrX 51333988 51334207 -125639933 - MER46A DNA MER2_type -1 235 1 345 217 96 70 chrX 51336217 51336374 -125637766 + MER117 DNA MER1_type 32 192 -5 443 205 140 18 chrX 51336729 51336900 -125637240 + LTR37B LTR ERV1 67 258 -210 236 253 320 0 chrX 51336910 51336985 -125637155 - MER5A DNA MER1_type -30 159 61 5481 169 11 17 chrX 51336991 51338120 -125636020 - L1MA5 LINE L1 -2 6298 5169 24969 90 2 2 chrX 51338226 51341665 -125632475 - L1P LINE L1 -2700 3446 9 1455 233 66 106 chrX 51341672 51342371 -125631769 + L1MC4 LINE L1 7367 8037 -5 184 313 0 30 chrX 51342393 51342460 -125631680 + MIR SINE MIR 186 250 -12 405 167 10 29 chrX 51342776 51342878 -125631262 + MSTB1 LTR MaLR 333 432 0 379 318 71 0 chrX 51342881 51343007 -125631133 + L2 LINE L2 1571 1705 -1609 219 203 34 0 chrX 51343021 51343080 -125631060 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1270 302 57 41 chrX 51343090 51343735 -125630405 + L2 LINE L2 2196 3150 -163 2803 175 26 17 chrX 51344143 51344726 -125629414 - L1MA5 LINE L1 -1071 5075 4488 7968 192 6 16 chrX 51344742 51346565 -125627575 - L1MA5 LINE L1 -2703 3443 1667 18463 42 7 3 chrX 51346667 51349016 -125625124 - L1P LINE L1 -1739 4407 2049 4259 204 16 2 chrX 51349133 51350094 -125624046 - L1 LINE L1 -905 6303 5330 1612 275 128 71 chrX 51350101 51351273 -125622867 - L1 LINE L1 -5961 1248 10 2918 201 16 0 chrX 51351662 51352293 -125621847 - L1P5 LINE L1 -1410 4736 4096 * 3578 169 14 14 chrX 51352292 51353388 -125620752 + L1P5 LINE L1 4729 5822 -329 353 133 63 0 chrX 51353388 51353546 -125620594 + (TA)n Simple_repeat Simple_repeat 1 168 0 239 214 0 0 chrX 51353655 51353711 -125620429 - L1M3 LINE L1 -488 5846 5791 11534 43 10 1 chrX 51353715 51355917 -125618223 - L1PA4 LINE L1 -3 6152 3936 17778 81 9 3 chrX 51355917 51358541 -125615599 + L1P3 LINE L1 2915 5547 -625 25 31 0 0 chrX 51359319 51359351 -125614789 + AT_rich Low_complexity Low_complexity 1 32 0 389 325 62 84 chrX 51359443 51359896 -125614244 - L2 LINE L2 -838 2476 2034 1024 209 110 30 chrX 51360187 51360588 -125613552 - L1MC5 LINE L1 -34 7927 7495 377 198 81 45 chrX 51360711 51360822 -125613318 - MIR SINE MIR -4 258 144 220 243 43 29 chrX 51360932 51361002 -125613138 + L2 LINE L2 3223 3293 -20 924 266 68 124 chrX 51361002 51361548 -125612592 - MLT1K LTR MaLR -70 518 4 584 293 26 53 chrX 51361590 51361856 -125612284 + MIR SINE MIR 2 260 -2 460 258 88 41 chrX 51362337 51362531 -125611609 + MIR SINE MIR 48 250 -12 24 32 0 0 chrX 51363330 51363361 -125610779 + AT_rich Low_complexity Low_complexity 1 31 0 2197 133 0 3 chrX 51363361 51363699 -125610441 - L1PB1 LINE L1 -1 6150 5814 2173 59 0 0 chrX 51363699 51363969 -125610171 + L1PA8 LINE L1 5890 6159 -13 7547 30 2 1 chrX 51364069 51365515 -125608625 + L1PA3 LINE L1 4706 6152 -3 1311 250 95 47 chrX 51365543 51366059 -125608081 - MLT1E1 LTR MaLR 0 654 114 1893 141 18 12 chrX 51366098 51366438 -125607702 - L1MA8 LINE L1 -1 6290 5949 777 283 64 33 chrX 51366438 51366830 -125607310 - L1ME4a LINE L1 -49 6072 5669 846 210 5 5 chrX 51366832 51367018 -125607122 - L1MA10 LINE L1 -2 6332 6147 298 270 20 20 chrX 51367213 51367313 -125606827 - L1ME4a LINE L1 -460 5661 5562 23 54 0 0 chrX 51367853 51367890 -125606250 + AT_rich Low_complexity Low_complexity 1 37 0 244 260 240 0 chrX 51369007 51369103 -125605037 - MIR SINE MIR -25 237 119 466 243 44 22 chrX 51369412 51369548 -125604592 - MIR SINE MIR 0 262 124 911 295 26 8 chrX 51369574 51369808 -125604332 + L2 LINE L2 2837 3074 -239 7060 165 7 11 chrX 51369815 51371841 -125602299 + L1PA15 LINE L1 3922 5939 -226 730 284 78 12 chrX 51371890 51372133 -125602007 + MIR SINE MIR 1 259 -3 407 347 115 22 chrX 51372415 51372876 -125601264 + L2 LINE L2 1705 2208 -1106 640 256 74 11 chrX 51372878 51373054 -125601086 + MIR SINE MIR 5 191 -71 601 354 11 57 chrX 51373060 51373532 -125600608 + L2 LINE L2 2251 2700 -614 232 191 0 0 chrX 51373851 51373893 -125600247 + L2 LINE L2 3184 3225 -88 191 319 14 14 chrX 51374090 51374159 -125599981 + L3 LINE CR1 1509 1577 0 669 277 47 35 chrX 51374459 51374715 -125599425 + MIR SINE MIR 1 259 -3 694 272 32 42 chrX 51374501 51374718 -125599422 + MIR SINE MIR 48 262 0 295 277 98 18 chrX 51374773 51374885 -125599255 - MIR SINE MIR -79 183 63 204 213 0 0 chrX 51375590 51375651 -125598489 + CT-rich Low_complexity Low_complexity 2 62 0 234 105 0 0 chrX 51375651 51375689 -125598451 + (CA)n Simple_repeat Simple_repeat 1 38 0 201 250 23 0 chrX 51375799 51375843 -125598297 - L2 LINE L2 -10 3262 3218 * 211 262 178 9 chrX 51375815 51375922 -125598218 - MIR SINE MIR -21 241 117 382 225 54 36 chrX 51376034 51376145 -125597995 - MIR SINE MIR -36 226 114 415 269 0 0 chrX 51376145 51376249 -125597891 + U6 snRNA snRNA 2 105 -2 484 222 39 33 chrX 51376252 51376432 -125597708 + L1ME3A LINE L1 5782 5962 -208 21 0 0 0 chrX 51376532 51376553 -125597587 + AT_rich Low_complexity Low_complexity 1 21 0 359 300 63 79 chrX 51376920 51377173 -125596967 + MIR SINE MIR 1 249 -13 648 317 28 14 chrX 51377845 51378070 -125596070 + MIR SINE MIR 30 256 -6 654 271 33 9 chrX 51378231 51378441 -125595699 + MER58C DNA MER1_type 1 215 0 368 294 72 33 chrX 51379081 51379261 -125594879 + MIR SINE MIR 70 256 -6 3489 249 69 28 chrX 51380296 51381497 -125592643 + L1ME3A LINE L1 3664 4813 -1357 1671 166 0 33 chrX 51381497 51381804 -125592336 - AluJo SINE Alu -15 297 1 3489 249 69 28 chrX 51381804 51382617 -125591523 + L1ME3A LINE L1 4813 5794 -376 1664 96 4 16 chrX 51382617 51382866 -125591274 + L1PA8A LINE L1 5886 6131 0 3489 249 69 28 chrX 51382866 51383248 -125590892 + L1ME3A LINE L1 5794 6159 -11 908 230 180 12 chrX 51383273 51383612 -125590528 - MLT1D LTR MaLR -8 497 102 1032 289 96 5 chrX 51384379 51384766 -125589374 + L2 LINE L2 2291 2712 -602 180 267 0 0 chrX 51384840 51384900 -125589240 + GA-rich Low_complexity Low_complexity 2 61 0 354 123 0 0 chrX 51385699 51385756 -125588384 + (CA)n Simple_repeat Simple_repeat 2 58 0 731 291 207 14 chrX 51386071 51386573 -125587567 + L2 LINE L2 2705 3312 -1 278 355 11 54 chrX 51386595 51386781 -125587359 - L3 LINE CR1 -9 1568 1391 1533 222 113 0 chrX 51386795 51387192 -125586948 + L1MDa LINE L1 41 482 -6058 12273 145 24 4 chrX 51387482 51389647 -125584493 + Tigger1 DNA MER2_type 209 2416 -2 644 203 49 12 chrX 51389650 51389840 -125584300 - L1P4 LINE L1 -497 5669 5473 786 85 184 0 chrX 51389857 51389998 -125584142 - L1MA2 LINE L1 -12 6292 6126 6144 151 14 8 chrX 51390009 51390686 -125583454 - L1MA1 LINE L1 -4 7717 7045 1622 121 197 25 chrX 51390686 51391051 -125583089 - MSTA LTR MaLR 0 428 1 6144 151 14 8 chrX 51391051 51392172 -125581968 - L1MA1 LINE L1 -676 7045 5907 4804 205 21 8 chrX 51392169 51393802 -125580338 - L1MA1 LINE L1 -2684 4881 3221 * 1167 232 48 40 chrX 51393795 51394170 -125579970 - L1MA1 LINE L1 -7174 391 14 * 10376 216 47 8 chrX 51394163 51394801 -125579339 - L1MA4A LINE L1 -156 6147 5536 2145 125 3 3 chrX 51394801 51395098 -125579042 - AluSq SINE Alu -15 298 2 10376 216 47 8 chrX 51395098 51397990 -125576150 - L1MA4A LINE L1 -767 5536 2473 3995 239 42 35 chrX 51397986 51399709 -125574431 - L1 LINE L1 -2465 4641 2902 * 578 159 0 23 chrX 51399720 51399852 -125574288 + MER2 DNA MER2_type 78 206 -139 902 198 44 18 chrX 51399956 51400229 -125573911 - L1 LINE L1 -4640 2397 2118 838 286 176 32 chrX 51400252 51401040 -125573100 - L1 LINE L1 -6063 967 66 1063 185 9 32 chrX 51401075 51401291 -125572849 - AluJo SINE Alu -15 297 87 338 197 0 26 chrX 51401292 51401368 -125572772 - L1 LINE L1 -6956 74 1 278 164 0 0 chrX 51401830 51401885 -125572255 + L1PB1 LINE L1 6089 6143 -8 228 133 44 0 chrX 51401896 51401941 -125572199 + A-rich Low_complexity Low_complexity 1 47 0 650 100 0 0 chrX 51402071 51402161 -125571979 + L1PA5 LINE L1 11 100 -6046 * 35281 57 3 1 chrX 51402157 51407678 -125566462 + L1PA5 LINE L1 623 6154 0 404 347 36 14 chrX 51407749 51408026 -125566114 - L2 LINE L2 -1450 1864 1582 752 240 0 96 chrX 51408343 51408572 -125565568 + MIR SINE MIR 56 262 0 237 321 73 9 chrX 51408727 51408836 -125565304 - L2 LINE L2 -15 3298 3183 240 298 62 86 chrX 51408901 51409193 -125564947 - L2 LINE L2 -1228 2086 1802 1424 275 39 54 chrX 51410374 51411057 -125563083 - L2 LINE L2 -251 3062 2393 282 258 40 65 chrX 51410988 51411112 -125563028 + MIR SINE MIR 142 262 0 * 249 231 279 19 chrX 51411255 51411359 -125562781 + MIR SINE MIR 122 252 -10 481 273 162 0 chrX 51411388 51411542 -125562598 + MER5A DNA MER1_type 9 187 -2 256 315 0 34 chrX 51411553 51411642 -125562498 - MIR3 SINE MIR -39 169 84 876 191 0 106 chrX 51411867 51412103 -125562037 - MIR SINE MIR -11 251 41 302 253 66 22 chrX 51412633 51412724 -125561416 - MIR3 SINE MIR -5 203 109 245 179 19 75 chrX 51413329 51413435 -125560705 + G-rich Low_complexity Low_complexity 2 101 0 898 235 12 61 chrX 51414552 51414799 -125559341 + MIR SINE MIR 28 262 0 241 297 11 55 chrX 51415392 51415483 -125558657 + MIR SINE MIR 20 106 -156 252 0 0 0 chrX 51415538 51415566 -125558574 + (TG)n Simple_repeat Simple_repeat 2 29 0 465 277 23 0 chrX 51415666 51415796 -125558344 + MIR SINE MIR 101 233 -29 843 311 63 18 chrX 51415830 51416161 -125557979 - L3 LINE CR1 -71 1506 1161 181 326 34 11 chrX 51416159 51416248 -125557892 - L2 LINE L2 -845 2469 2379 * 29 0 0 0 chrX 51416274 51416303 -125557837 + AT_rich Low_complexity Low_complexity 1 29 0 1701 172 7 7 chrX 51416305 51416596 -125557544 + AluJo SINE Alu 1 291 -21 246 324 55 32 chrX 51416625 51416813 -125557327 - MIR SINE MIR -44 218 30 257 329 59 71 chrX 51417217 51417387 -125556753 + L2 LINE L2 3099 3266 -6 475 337 43 16 chrX 51417762 51417949 -125556191 + MIR3 SINE MIR 16 207 -1 302 194 28 14 chrX 51418006 51418078 -125556062 + L3 LINE CR1 1401 1473 -104 22 0 0 0 chrX 51419235 51419257 -125554883 + AT_rich Low_complexity Low_complexity 1 22 0 289 225 22 0 chrX 51419979 51420068 -125554072 + CT-rich Low_complexity Low_complexity 3 93 0 1988 133 34 0 chrX 51420070 51420364 -125553776 - AluSx SINE Alu -8 304 1 307 284 105 0 chrX 51420419 51420514 -125553626 - MER5B DNA MER1_type -68 110 6 21 36 0 0 chrX 51421118 51421146 -125552994 + AT_rich Low_complexity Low_complexity 1 28 0 1863 122 3 7 chrX 51421146 51421440 -125552700 - L1PB1 LINE L1 -9 6142 5850 483 291 0 0 chrX 51421441 51421620 -125552520 + (TA)n Simple_repeat Simple_repeat 1 179 0 324 143 0 0 chrX 51421627 51421683 -125552457 + (TG)n Simple_repeat Simple_repeat 2 57 0 12869 185 59 37 chrX 51421683 51427874 -125546266 - L1PB1 LINE L1 -15 6852 6 1755 191 0 0 chrX 51427977 51428270 -125545870 - AluSx SINE Alu -19 293 1 1570 302 21 24 chrX 51428424 51428961 -125545179 - L2 LINE L2 -6 3307 2770 261 250 45 23 chrX 51429049 51429137 -125545003 - L2 LINE L2 -524 2790 2701 185 258 81 16 chrX 51429243 51429305 -125544835 - L2 LINE L2 -1884 1430 1365 630 239 80 0 chrX 51429317 51429480 -125544660 + MER5B DNA MER1_type 3 178 0 219 324 167 0 chrX 51429482 51429584 -125544556 - MIR3 SINE MIR -38 170 52 4066 179 36 43 chrX 51430594 51431251 -125542889 - L1MB7 LINE L1 -21 6163 5503 2144 77 0 0 chrX 51431251 51431511 -125542629 - AluSq SINE Alu -53 260 1 4066 179 36 43 chrX 51431511 51432206 -125541934 - L1MB7 LINE L1 -681 5503 4843 1488 249 36 11 chrX 51432208 51432658 -125541482 + L1ME3 LINE L1 5701 6161 -1 338 322 98 44 chrX 51433485 51433702 -125540438 - MIR SINE MIR -15 247 19 202 236 0 97 chrX 51433825 51433897 -125540243 - L2 LINE L2 -12 3301 3237 2034 107 33 0 chrX 51434319 51434591 -125539549 + AluSq SINE Alu 1 281 -32 473 180 0 10 chrX 51434591 51434691 -125539449 + GA-rich Low_complexity Low_complexity 3 101 0 276 330 60 39 chrX 51435586 51435768 -125538372 - MIR SINE MIR -66 196 11 314 255 20 69 chrX 51435945 51436047 -125538093 + MIR SINE MIR 116 212 -50 689 282 62 0 chrX 51436144 51436339 -125537801 + MIR SINE MIR 53 259 -3 453 336 205 11 chrX 51437247 51437751 -125536389 - L2 LINE L2 -1 3312 2713 617 251 143 68 chrX 51438076 51438531 -125535609 - MLT1L LTR MaLR -4 611 123 32 26 0 0 chrX 51439674 51439713 -125534427 + AT_rich Low_complexity Low_complexity 1 39 0 3948 217 85 30 chrX 51439736 51441693 -125532447 - L1MDb LINE L1 -3938 2468 399 248 244 64 13 chrX 51441713 51441791 -125532349 + MIR SINE MIR 112 193 -69 211 376 8 16 chrX 51441785 51441910 -125532230 + L2 LINE L2 3190 3313 0 * 195 100 0 0 chrX 51441928 51441958 -125532182 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 183 292 0 0 chrX 51442114 51442162 -125531978 - MIR SINE MIR -14 248 201 408 20 0 0 chrX 51442191 51442240 -125531900 + (TG)n Simple_repeat Simple_repeat 2 50 0 301 340 10 0 chrX 51442615 51442718 -125531422 - L1M4 LINE L1 -1161 4985 4882 419 341 89 6 chrX 51442746 51442925 -125531215 - MIR SINE MIR -66 196 3 389 238 126 0 chrX 51443225 51443376 -125530764 - MLT1J1 LTR MaLR -4 442 273 393 133 24 12 chrX 51443378 51443461 -125530679 - L1MB8 LINE L1 0 6178 6095 1061 208 43 0 chrX 51443480 51443735 -125530405 - L1MB4 LINE L1 -6 6174 5909 * 3211 218 68 24 chrX 51443732 51444836 -125529304 - L1M4c LINE L1 -4555 2091 939 258 105 0 0 chrX 51444849 51444887 -125529253 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1000 222 15 0 chrX 51444890 51445088 -125529052 - AluJb SINE Alu -27 285 85 514 316 82 55 chrX 51445095 51446019 -125528121 - L1M4c LINE L1 -5587 955 7 549 332 15 2 chrX 51446024 51446294 -125527846 - MLT1J2 LTR MaLR -171 275 1 258 259 126 67 chrX 51446389 51446524 -125527616 - MIR3 SINE MIR -14 194 52 541 236 20 79 chrX 51446552 51446670 -125527470 + MER112 DNA MER1_type 1 98 -162 918 281 75 18 chrX 51446670 51447054 -125527086 + MLT1I LTR MaLR 4 409 0 541 236 20 79 chrX 51447054 51447189 -125526951 + MER112 DNA MER1_type 98 239 -21 323 174 0 14 chrX 51448841 51448910 -125525230 - MLT1I LTR MaLR -19 390 323 425 232 65 14 chrX 51448977 51449115 -125525025 - MLT1I LTR MaLR -197 212 68 534 262 47 40 chrX 51450151 51450300 -125523840 + MIR3 SINE MIR 36 185 -23 607 237 29 0 chrX 51451526 51451665 -125522475 - Charlie8 DNA MER1_type -2159 258 116 1764 235 98 10 chrX 51451803 51452323 -125521817 - MLT1E2 LTR MaLR -1 625 60 427 237 23 49 chrX 51453380 51453570 -125520570 - MIR SINE MIR -37 225 45 603 345 56 16 chrX 51453866 51454170 -125519970 - L3 LINE CR1 -28 1549 1234 291 350 44 22 chrX 51454188 51454325 -125519815 - L3 LINE CR1 -468 1109 970 381 102 0 0 chrX 51454836 51454895 -125519245 + (CA)n Simple_repeat Simple_repeat 2 60 0 231 83 28 0 chrX 51456673 51456709 -125517431 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 180 77 0 0 chrX 51456905 51456931 -125517209 + (TAA)n Simple_repeat Simple_repeat 1 26 0 193 138 0 0 chrX 51457951 51457980 -125516160 + MIR SINE MIR 41 69 -139 2418 227 34 13 chrX 51458385 51459063 -125515077 + L1MB8 LINE L1 5486 6177 -1 309 26 0 0 chrX 51459179 51459217 -125514923 + (CA)n Simple_repeat Simple_repeat 1 38 0 435 340 84 13 chrX 51460196 51460434 -125513706 - MIR SINE MIR -3 259 5 10742 219 43 17 chrX 51460622 51464771 -125509369 + L1P5 LINE L1 1958 6250 -617 14327 96 123 6 chrX 51464786 51468148 -125505992 + L1PA7 LINE L1 2384 6150 -4 360 309 108 29 chrX 51468401 51468605 -125505535 + MIR SINE MIR 5 224 -38 2673 152 8 6 chrX 51468658 51469126 -125505014 + L1PB1 LINE L1 5676 6144 -7 10615 201 73 63 chrX 51469145 51470636 -125503504 - L1P LINE L1 -2222 3924 2451 3729 31 2 0 chrX 51470636 51471081 -125503059 - L1PA3 LINE L1 0 6155 5710 10615 201 73 63 chrX 51471081 51472621 -125501519 - L1P LINE L1 -3695 2451 860 1109 219 0 17 chrX 51472627 51472860 -125501280 - L1PA12 LINE L1 -7350 231 3 1515 129 35 25 chrX 51472864 51473150 -125500990 + L1PA15-16 LINE L1 2350 2638 -4927 8994 206 54 11 chrX 51473150 51476179 -125497961 + L1M1 LINE L1 2876 6033 -1532 * 9683 139 6 7 chrX 51476172 51477798 -125496342 - L1P LINE L1 -2565 3581 1959 2392 119 8 0 chrX 51477800 51478179 -125495961 + L1M1 LINE L1 6293 6674 -891 5914 71 4 3 chrX 51478179 51478965 -125495175 + L1PA8 LINE L1 5383 6172 0 254 109 0 36 chrX 51478965 51479020 -125495120 + L1MA6 LINE L1 6248 6300 0 4045 239 20 14 chrX 51479027 51480386 -125493754 + L1PA15-16 LINE L1 2696 4073 -3492 * 16395 203 47 21 chrX 51480385 51483133 -125491007 + L1M1 LINE L1 16 2690 -4875 1873 152 0 29 chrX 51483133 51483448 -125490692 + AluSx SINE Alu 2 307 -5 16395 203 47 21 chrX 51483448 51483803 -125490337 + L1M1 LINE L1 2690 3034 -4531 3614 103 0 4 chrX 51483803 51484316 -125489824 + MER9 LTR ERVK 1 511 0 16395 203 47 21 chrX 51484316 51485670 -125488470 + L1M1 LINE L1 3034 4592 -2973 13694 51 3 2 chrX 51485680 51487446 -125486694 - L1P LINE L1 -1463 4683 2915 11534 43 7 0 chrX 51487446 51489648 -125484492 + L1PA4 LINE L1 3936 6152 -3 1927 204 49 4 chrX 51489652 51490118 -125484022 + L1MA9 LINE L1 5791 6277 -35 3484 194 16 12 chrX 51490133 51490820 -125483320 - L1PA16 LINE L1 -2 6164 5475 1619 106 12 12 chrX 51490820 51491063 -125483077 - L1PA7 LINE L1 -5 6149 5894 6490 41 0 0 chrX 51491063 51491852 -125482288 - L1P LINE L1 -1731 4415 3627 7799 14 1 0 chrX 51491852 51493543 -125480597 + L1PA2 LINE L1 4456 6148 -7 777 84 0 0 chrX 51493545 51493664 -125480476 + (TA)n Simple_repeat Simple_repeat 1 119 0 30146 119 11 70 chrX 51493665 51499952 -125474188 - L1PA7 LINE L1 -239 5915 12 697 164 17 60 chrX 51499940 51500094 -125474046 - L1P4 LINE L1 -652 5514 5368 * 1367 228 23 26 chrX 51500094 51500401 -125473739 - AluSx SINE Alu -6 306 1 697 164 17 60 chrX 51500401 51500431 -125473709 - L1P4 LINE L1 -798 5368 5338 8976 120 25 0 chrX 51500431 51502588 -125471552 + L1PA8 LINE L1 3978 6164 -8 657 174 23 6 chrX 51502826 51502840 -125471300 + L1PB4 LINE L1 5825 5837 -463 2825 3 0 0 chrX 51502840 51503143 -125470997 + AluY SINE Alu 1 303 -8 657 174 23 6 chrX 51503143 51503376 -125470764 + L1PB4 LINE L1 5837 6292 -8 460 249 98 35 chrX 51503392 51503709 -125470431 + L1MC5 LINE L1 7581 7917 -44 3338 250 44 27 chrX 51503762 51504943 -125469197 - L1 LINE L1 -796 5350 4150 5163 52 3 0 chrX 51505574 51506332 -125467808 - L1P2 LINE L1 -667 5487 4727 2012 41 0 0 chrX 51506333 51506576 -125467564 + L1PA4 LINE L1 5910 6152 -3 29 47 0 0 chrX 51506576 51506619 -125467521 + AT_rich Low_complexity Low_complexity 1 43 0 1901 272 64 24 chrX 51506879 51507771 -125466369 + L1M4 LINE L1 3329 4258 -1888 17273 196 32 10 chrX 51507794 51511248 -125462892 + L1MA3 LINE L1 10 3540 -4025 2488 123 28 5 chrX 51511343 51511733 -125462407 - MLT2A1 LTR ERVL -45 399 1 26567 95 5 4 chrX 51511733 51511810 -125462330 - ERVL-A1 LTR ERVL -7 5757 5682 2479 80 0 0 chrX 51511810 51512121 -125462019 + AluSx SINE Alu 1 311 -1 26567 95 5 4 chrX 51512121 51516868 -125457272 - ERVL-A1 LTR ERVL -82 5682 905 3580 55 4 4 chrX 51516899 51517355 -125456785 - L1PA4 LINE L1 -1 6154 5699 3253 28 0 0 chrX 51517355 51517962 -125456178 + L1P2 LINE L1 5050 5656 -499 3489 97 2 13 chrX 51517962 51518488 -125455652 - ERVL-A1 LTR ERVL -4738 916 397 3068 24 0 3 chrX 51518591 51518974 -125455166 + L1P2 LINE L1 5275 5656 -499 6473 93 1 2 chrX 51518974 51519891 -125454249 - HERVL-A1 LTR ERVL -4738 916 1 2220 116 33 6 chrX 51519962 51520324 -125453816 - MLT2A1 LTR ERVL -72 372 1 394 235 0 0 chrX 51520329 51520431 -125453709 + L1MA3 LINE L1 3853 3954 -3611 4906 165 26 29 chrX 51520437 51521627 -125452513 + L1MA3 LINE L1 6524 7718 -6 1362 271 68 15 chrX 51521643 51522171 -125451969 + L1ME1 LINE L1 5594 6149 -17 465 327 106 13 chrX 51522254 51522480 -125451660 + MIR SINE MIR 5 251 -11 2034 309 57 16 chrX 51522550 51525136 -125449004 + L1M4c LINE L1 12 1522 -4514 303 298 11 53 chrX 51525155 51525343 -125448797 + L1M4c LINE L1 1634 1813 -4223 2089 142 19 11 chrX 51525372 51525739 -125448401 - L1PB1 LINE L1 0 6151 5782 306 242 0 66 chrX 51525742 51525833 -125448307 + L1MC4 LINE L1 6614 6698 -1344 231 36 0 0 chrX 51525860 51525888 -125448252 + (CA)n Simple_repeat Simple_repeat 2 29 0 4115 181 8 36 chrX 51525889 51527545 -125446595 - L1P5 LINE L1 -346 5805 4204 5589 234 19 5 chrX 51527652 51527769 -125446371 - L1 LINE L1 -1617 4529 4415 378 115 0 0 chrX 51527769 51527830 -125446310 + (TA)n Simple_repeat Simple_repeat 2 62 0 5589 234 19 5 chrX 51527830 51529301 -125444839 - L1 LINE L1 -1731 4415 2919 974 204 0 0 chrX 51529302 51529474 -125444666 + AluSg/x SINE Alu 134 305 -7 2422 136 11 5 chrX 51529474 51529955 -125444185 + L1PB1 LINE L1 2355 2903 -3959 1789 44 4 0 chrX 51529956 51530183 -125443957 - L1PA4 LINE L1 -529 5626 5399 4237 51 0 2 chrX 51530183 51530710 -125443430 + L1PA4 LINE L1 5626 6152 -3 1959 211 2 0 chrX 51530710 51531150 -125442990 + L1PB1 LINE L1 2896 3336 -3526 * 5884 206 109 3 chrX 51531149 51533391 -125440749 + L1PB1 LINE L1 3961 6452 -415 441 0 0 0 chrX 51533395 51533444 -125440696 + (TA)n Simple_repeat Simple_repeat 1 49 0 2192 142 3 6 chrX 51533445 51533804 -125440336 + L1PB1 LINE L1 6510 6867 0 3550 189 71 3 chrX 51534908 51536200 -125437940 + L1PA8 LINE L1 4790 6165 -7 182 256 100 67 chrX 51536495 51536585 -125437555 - MER5A DNA MER1_type -89 100 8 28 0 0 0 chrX 51537190 51537218 -125436922 + AT_rich Low_complexity Low_complexity 1 28 0 314 300 40 10 chrX 51537225 51537325 -125436815 - MIR SINE MIR -156 106 4 365 333 66 10 chrX 51537796 51537994 -125436146 - L2 LINE L2 -163 3150 2942 * 1452 284 28 40 chrX 51537976 51538447 -125435693 - L2 LINE L2 -657 2657 2193 230 203 34 0 chrX 51538454 51538513 -125435627 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 464 264 85 0 chrX 51538527 51538656 -125435484 - L2 LINE L2 -1609 1705 1566 1854 215 31 9 chrX 51538656 51539079 -125435061 - MSTB1 LTR MaLR 0 432 1 186 261 138 0 chrX 51539457 51539522 -125434618 + MER5A DNA MER1_type 27 100 -89 361 91 0 0 chrX 51539817 51539872 -125434268 - L1PA13 LINE L1 0 6163 6109 1738 314 84 34 chrX 51539881 51540677 -125433463 + L1PA15 LINE L1 2 837 -5950 11289 245 31 16 chrX 51540697 51545089 -125429051 + L1PA15 LINE L1 1283 5775 -1041 4405 108 7 15 chrX 51545089 51545776 -125428364 + L1MA1 LINE L1 5616 6297 -5 11289 245 31 16 chrX 51545776 51546235 -125427905 + L1PA15 LINE L1 5775 6225 -591 2091 193 37 0 chrX 51546347 51546778 -125427362 + L1PA15 LINE L1 6260 6706 -110 6485 165 24 11 chrX 51546784 51549270 -125424870 - L1MA3 LINE L1 -338 7386 2299 8653 211 33 8 chrX 51549270 51551085 -125423055 - L1MA3 LINE L1 -5518 2047 188 2075 154 37 18 chrX 51551091 51551474 -125422666 - MER21A LTR ERV1 -6 925 536 921 194 32 5 chrX 51551476 51551662 -125422478 + MER21-int LTR ERV1 3579 3769 -422 971 193 67 33 chrX 51551675 51551970 -125422170 - MER21A LTR ERV1 -421 442 108 1966 159 0 0 chrX 51551970 51552266 -125421874 - AluSx SINE Alu -16 296 1 971 193 67 33 chrX 51552266 51552376 -125421764 - MER21A LTR ERV1 -755 108 3 10092 199 48 14 chrX 51552379 51552419 -125421721 - MER21A-int LTR ERV1 0 4191 4154 414 0 0 0 chrX 51552419 51552465 -125421675 + (TA)n Simple_repeat Simple_repeat 2 47 0 10092 199 48 14 chrX 51552465 51553233 -125420907 - MER21A-int LTR ERV1 -37 4154 3414 210 71 0 0 chrX 51553233 51553261 -125420879 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 10092 199 48 14 chrX 51553261 51555026 -125419114 - MER21A-int LTR ERV1 -777 3414 1439 1173 165 47 9 chrX 51557372 51557638 -125416502 - MER21A-int LTR ERV1 -2408 4350 1185 5100 114 44 2 chrX 51557639 51558472 -125415668 - L1PA11 LINE L1 0 6174 5307 286 280 0 47 chrX 51558474 51558581 -125415559 + L1M1 LINE L1 333 434 -7131 2238 144 55 9 chrX 51558586 51559023 -125415117 + L1MA2 LINE L1 5844 6300 -4 538 240 129 9 chrX 51559093 51559326 -125414814 - L1M4 LINE L1 -1599 4547 4287 12403 55 3 2 chrX 51759329 51761401 -125212739 + L1P2 LINE L1 3722 5796 -358 2026 228 46 31 chrX 51763706 51764758 -125209382 - L1M4c LINE L1 -4651 2308 1232 21 0 0 0 chrX 51764888 51764909 -125209231 + AT_rich Low_complexity Low_complexity 1 21 0 280 114 0 0 chrX 51764980 51765024 -125209116 + MER96B DNA MER1_type? 190 233 -184 1740 276 24 76 chrX 51765731 51766440 -125207700 - L1M4c LINE L1 -5928 931 260 425 296 33 86 chrX 51766555 51766859 -125207281 - L2 LINE L2 -58 3255 2968 473 260 49 79 chrX 51768255 51768484 -125205656 + MIR3 SINE MIR 1 220 -42 189 252 10 107 chrX 51768734 51768837 -125205303 - L3 LINE CR1 -276 1301 1209 215 333 14 0 chrX 51768869 51768938 -125205202 - L3 LINE CR1 -495 1082 1013 708 185 40 65 chrX 51768952 51769152 -125204988 + MER2 DNA MER2_type 6 200 -145 224 246 29 29 chrX 51769271 51769340 -125204800 - L3 LINE CR1 -568 1009 941 204 275 29 43 chrX 51769344 51769413 -125204727 - L2 LINE L2 -2 3311 3244 323 330 39 10 chrX 51771363 51771466 -125202674 + MIR3 SINE MIR 8 113 -95 868 274 14 0 chrX 51771587 51771795 -125202345 + MIR SINE MIR 8 218 -44 23 33 0 0 chrX 51772069 51772099 -125202041 + AT_rich Low_complexity Low_complexity 1 30 0 210 250 0 0 chrX 51773365 51773413 -125200727 + T-rich Low_complexity Low_complexity 1 48 0 302 299 68 34 chrX 51774251 51774368 -125199772 - MIR SINE MIR -93 169 49 1606 11 0 0 chrX 51775445 51775624 -125198516 - AluYb8 SINE Alu -9 309 131 228 293 183 67 chrX 51775656 51775820 -125198320 - L2 LINE L2 -10 3262 3080 341 300 116 16 chrX 51776905 51777081 -125197059 - MIR SINE MIR -64 144 5 7223 38 4 0 chrX 51780537 51781994 -125192146 - L1PA4 LINE L1 -3 6152 4686 2150 244 59 22 chrX 51782133 51782478 -125191662 - L1M4 LINE L1 -2437 4207 3876 1715 162 138 21 chrX 51782478 51782861 -125191279 + MSTA LTR MaLR 1 428 0 2150 244 59 22 chrX 51782861 51783409 -125190731 - L1M4 LINE L1 -2768 3876 3281 568 225 0 0 chrX 51783413 51783542 -125190598 - L1M4 LINE L1 -6381 161 33 224 220 0 0 chrX 51783686 51783736 -125190404 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 232 366 62 18 chrX 51783748 51783860 -125190280 - L2 LINE L2 -49 3223 3107 367 306 10 10 chrX 51784721 51784819 -125189321 - MIR SINE MIR -160 102 5 184 219 24 0 chrX 51784836 51784875 -125189265 - MIR3 SINE MIR -16 192 153 419 250 19 9 chrX 51784875 51784983 -125189157 - MER5B DNA MER1_type 0 178 70 2709 70 0 8 chrX 51784990 51785346 -125188794 + L1PA7 LINE L1 5787 6139 -15 186 97 32 65 chrX 51785351 51785444 -125188696 + (TA)n Simple_repeat Simple_repeat 2 91 0 12141 71 17 2 chrX 51785557 51787725 -125186415 - L1P3 LINE L1 -332 5822 3623 347 316 0 66 chrX 51788151 51788287 -125185853 + L2 LINE L2 3134 3260 -12 42 48 0 0 chrX 51788882 51788945 -125185195 + AT_rich Low_complexity Low_complexity 1 63 0 3273 115 16 14 chrX 51788962 51789518 -125184622 + L1MA2 LINE L1 5748 6304 0 225 288 0 62 chrX 51790090 51790170 -125183970 - L3 LINE CR1 -6 1571 1497 1561 209 136 34 chrX 51790455 51791031 -125183109 + MLT1E2 LTR MaLR 1 626 0 400 361 91 50 chrX 51791356 51791976 -125182164 - L2 LINE L2 -1 3271 2626 286 329 24 0 chrX 51792125 51792210 -125181930 - MIR SINE MIR -171 91 5 447 19 0 0 chrX 51792339 51792391 -125181749 + (TG)n Simple_repeat Simple_repeat 1 52 0 247 236 0 36 chrX 51792776 51792831 -125181309 + MER5A DNA MER1_type 57 109 -80 412 315 108 0 chrX 51794060 51794190 -125179950 - L2 LINE L2 -4 3268 3125 1338 128 80 0 chrX 51794465 51794714 -125179426 - L1MA7 LINE L1 -6 6285 6017 2314 96 7 0 chrX 51795167 51795469 -125178671 - AluSp SINE Alu -9 304 1 263 263 22 123 chrX 51795496 51795675 -125178465 + MIR SINE MIR 46 206 -56 243 241 0 17 chrX 51795736 51795794 -125178346 + MIR SINE MIR 156 212 -50 15969 55 31 0 chrX 51796480 51798677 -125175463 + L1P LINE L1 934 3199 -2947 273 293 78 48 chrX 51799134 51799301 -125174839 + MIR3 SINE MIR 33 204 -4 322 331 39 16 chrX 51799838 51799965 -125174175 - MIR SINE MIR -113 149 20 410 309 47 26 chrX 51800588 51800779 -125173361 + MIR SINE MIR 53 247 -15 315 320 80 8 chrX 51801266 51801391 -125172749 + L2 LINE L2 3134 3267 -5 1692 181 30 0 chrX 51801604 51801875 -125172265 + AluSx SINE Alu 1 279 -33 387 305 18 43 chrX 51801900 51802064 -125172076 + MIR SINE MIR 55 214 -48 186 66 49 49 chrX 51802895 51802956 -125171184 + (TA)n Simple_repeat Simple_repeat 1 61 0 629 151 25 0 chrX 51802958 51803077 -125171063 + L1PB2 LINE L1 6023 6144 -7 56 39 0 0 chrX 51803077 51803154 -125170986 + AT_rich Low_complexity Low_complexity 1 77 0 379 131 57 90 chrX 51803154 51803276 -125170864 + L1 LINE L1 2233 2350 -3796 229 113 28 56 chrX 51803291 51803362 -125170778 + (TA)n Simple_repeat Simple_repeat 1 69 0 7027 47 5 1 chrX 51803362 51804756 -125169384 - L1PA7 LINE L1 -15 6139 4746 477 110 14 0 chrX 51804758 51804831 -125169309 - L1PA7 LINE L1 -2042 4104 4031 1091 119 5 26 chrX 51804831 51805025 -125169115 - L1PB2 LINE L1 -117 6034 5845 20695 138 26 23 chrX 51805025 51808631 -125165509 - L1M1 LINE L1 -3932 3633 17 298 296 12 0 chrX 51808702 51808783 -125165357 + MIR SINE MIR 70 151 -111 23 0 0 0 chrX 51808908 51808931 -125165209 + AT_rich Low_complexity Low_complexity 1 23 0 681 263 20 50 chrX 51810411 51810609 -125163531 + MIR3 SINE MIR 1 192 -16 23 33 0 0 chrX 51810620 51810650 -125163490 + AT_rich Low_complexity Low_complexity 1 30 0 473 231 62 92 chrX 51810708 51810873 -125163267 + MIR3 SINE MIR 20 172 -36 1478 130 0 54 chrX 51811097 51811273 -125162867 - L1MA9 LINE L1 -364 5948 5789 1407 149 0 0 chrX 51811273 51811488 -125162652 - L1PA15 LINE L1 0 6165 5951 1478 130 0 54 chrX 51811488 51811572 -125162568 - L1MA9 LINE L1 -523 5789 5702 2095 126 14 31 chrX 51811572 51811927 -125162213 + L1MA7 LINE L1 5936 6287 -4 641 250 129 8 chrX 51812101 51812381 -125161759 - L1ME LINE L1 -306 5815 5485 660 291 131 27 chrX 51812414 51813313 -125160827 - L1ME LINE L1 -740 5430 4438 258 360 54 7 chrX 51814237 51814384 -125159756 + MIR3 SINE MIR 49 202 -6 954 159 139 20 chrX 51814644 51814845 -125159295 + L1 LINE L1 3914 4138 -2008 24 0 0 0 chrX 51814923 51814947 -125159193 + AT_rich Low_complexity Low_complexity 1 24 0 1803 144 7 27 chrX 51814947 51815239 -125158901 - AluJb SINE Alu -26 286 1 592 292 64 12 chrX 51816098 51816269 -125157871 - MIR3 SINE MIR -15 193 14 247 317 0 0 chrX 51816305 51816365 -125157775 + L2 LINE L2 3197 3256 -16 250 200 20 0 chrX 51817046 51817096 -125157044 + L2 LINE L2 3251 3301 -12 186 133 0 0 chrX 51817233 51817263 -125156877 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 311 259 24 12 chrX 51817834 51817919 -125156221 - L2 LINE L2 -1 3271 3186 228 250 19 0 chrX 51818783 51818835 -125155305 + CT-rich Low_complexity Low_complexity 3 55 0 227 271 42 0 chrX 51820797 51820845 -125153295 - L2 LINE L2 -17 3255 3206 315 302 242 11 chrX 51820916 51821098 -125153042 + MIR SINE MIR 31 254 -8 365 289 74 8 chrX 51821686 51821807 -125152333 + MIR3 SINE MIR 76 204 -4 241 306 0 12 chrX 51823180 51823265 -125150875 + (TCCA)n Simple_repeat Simple_repeat 3 86 0 468 221 39 19 chrX 51823266 51823370 -125150770 - L2 LINE L2 0 3313 3208 236 345 103 21 chrX 51823447 51823592 -125150548 - L2 LINE L2 -274 2998 2842 476 302 25 0 chrX 51824039 51824198 -125149942 - MER103 DNA DNA -2 164 2 486 311 25 25 chrX 51825157 51825353 -125148787 + MIR SINE MIR 5 200 -62 24 0 0 0 chrX 51826106 51826130 -125148010 + AT_rich Low_complexity Low_complexity 1 24 0 189 77 0 0 chrX 51827553 51827579 -125146561 + MIR SINE MIR 158 183 -79 306 7 0 0 chrX 51828387 51828510 -125145630 + (CA)n Simple_repeat Simple_repeat 1 148 0 198 103 0 0 chrX 51828781 51828810 -125145330 + (T)n Simple_repeat Simple_repeat 1 29 0 437 216 40 91 chrX 51829507 51829683 -125144457 + MIR3 SINE MIR 19 185 -23 318 192 41 14 chrX 51830042 51830115 -125144025 - MIR SINE MIR -43 219 145 384 254 9 35 chrX 51830320 51830434 -125143706 - MIR SINE MIR -70 192 82 860 223 11 0 chrX 51830619 51830794 -125143346 - MIR SINE MIR -74 188 12 181 286 29 29 chrX 51830794 51830864 -125143276 - MIR SINE MIR -63 145 76 279 217 48 48 chrX 51830974 51831057 -125143083 + Charlie8 DNA MER1_type 1 83 -2334 257 242 32 0 chrX 51831123 51831185 -125142955 + Charlie8 DNA MER1_type 2349 2412 -5 558 320 17 6 chrX 51831558 51831733 -125142407 - MIR SINE MIR -70 192 16 2900 223 54 2 chrX 51831759 51832352 -125141788 - MLT1E3 LTR MaLR 0 624 1 781 184 12 30 chrX 51833684 51833852 -125140288 + MER3 DNA MER1_type 1 165 -44 333 147 27 53 chrX 51833870 51833945 -125140195 + MER3 DNA MER1_type 136 208 -1 276 170 0 21 chrX 51833907 51833954 -125140186 - MER3 DNA MER1_type -124 85 40 * 395 243 184 7 chrX 51834014 51834150 -125139990 + MIR3 SINE MIR 16 175 -33 381 43 0 0 chrX 51834323 51834370 -125139770 + (CA)n Simple_repeat Simple_repeat 1 47 0 208 227 0 0 chrX 51834419 51834463 -125139677 + MIR3 SINE MIR 150 193 -15 295 184 61 71 chrX 51834759 51834857 -125139283 + MIR SINE MIR 113 209 -53 1830 169 23 0 chrX 51835450 51835752 -125138388 + AluJo SINE Alu 1 309 -3 42765 62 3 2 chrX 51836289 51842424 -125131716 - L1PA5 LINE L1 0 6154 13 191 313 12 48 chrX 51842517 51842600 -125131540 - L3 LINE CR1 0 1577 1498 384 111 0 0 chrX 51842686 51842749 -125131391 + (TG)n Simple_repeat Simple_repeat 2 64 0 219 114 0 0 chrX 51842751 51842786 -125131354 + (GA)n Simple_repeat Simple_repeat 2 36 0 1599 185 0 41 chrX 51842966 51843280 -125130860 - AluJo SINE Alu -11 301 1 344 329 21 21 chrX 51844377 51844520 -125129620 - MIR SINE MIR -11 251 109 438 267 103 8 chrX 51844771 51844900 -125129240 + MIR SINE MIR 1 143 -65 182 313 75 15 chrX 51845061 51845128 -125129012 - L3 LINE CR1 -126 1451 1381 411 306 82 24 chrX 51845528 51845721 -125128419 - MIR SINE MIR -56 206 3 460 278 108 28 chrX 51846175 51846351 -125127789 - MIR SINE MIR -56 206 17 180 259 69 17 chrX 51846712 51846770 -125127370 + MIR SINE MIR 196 256 -6 649 263 48 38 chrX 51846772 51847025 -125127115 + MIR SINE MIR 7 262 0 549 296 9 15 chrX 51848246 51848447 -125125693 + MIR3 SINE MIR 10 209 -53 180 206 103 88 chrX 51848674 51848742 -125125398 - MIR3 SINE MIR -21 187 119 638 304 36 98 chrX 51848752 51849193 -125124947 - L2 LINE L2 -3 3269 2856 963 228 10 5 chrX 51849520 51849726 -125124414 + MIR SINE MIR 13 219 -43 242 93 70 0 chrX 51849732 51849775 -125124365 + L1MA1 LINE L1 6254 6299 -3 498 319 36 34 chrX 51850649 51850886 -125123254 - MIR SINE MIR -5 257 17 330 322 116 35 chrX 51851031 51851230 -125122910 + MIR SINE MIR 24 238 -24 1689 136 0 12 chrX 51851284 51851535 -125122605 - AluSg SINE Alu -18 292 45 333 241 60 17 chrX 51852338 51852454 -125121686 - MER20B DNA MER1_type -654 129 9 360 176 22 66 chrX 51852650 51852741 -125121399 + MIR SINE MIR 78 164 -98 299 178 0 0 chrX 51852747 51852792 -125121348 - L2 LINE L2 -18 3254 3210 238 319 18 35 chrX 51852840 51853009 -125121131 + CT-rich Low_complexity Low_complexity 1 166 0 270 0 0 0 chrX 51853527 51853557 -125120583 + (CA)n Simple_repeat Simple_repeat 2 31 0 335 329 75 0 chrX 51853795 51853941 -125120199 + L3b LINE CR1 1316 1472 -111 237 83 0 0 chrX 51854299 51854335 -125119805 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 8536 46 2 0 chrX 51855983 51857021 -125117119 + L1P LINE L1 3722 4761 -1385 230 311 14 27 chrX 51857615 51857689 -125116451 - L2 LINE L2 0 3272 3200 2041 90 0 42 chrX 51857734 51858022 -125116118 - AluSg SINE Alu -18 292 17 271 306 153 24 chrX 51858122 51858246 -125115894 - MIR3 SINE MIR -60 148 9 375 275 42 42 chrX 51859149 51859269 -125114871 - MIR3 SINE MIR -29 179 60 484 188 0 0 chrX 51859915 51859995 -125114145 - MIR SINE MIR -114 148 69 464 301 0 36 chrX 51860098 51860291 -125113849 - L2 LINE L2 -210 3062 2877 283 401 8 8 chrX 51860448 51860580 -125113560 + MIR3 SINE MIR 41 172 -36 387 40 0 0 chrX 51860583 51860633 -125113507 + L1PA6 LINE L1 6099 6148 -6 30 59 0 0 chrX 51860633 51860684 -125113456 + AT_rich Low_complexity Low_complexity 1 51 0 265 283 210 22 chrX 51860762 51860900 -125113240 + MIR SINE MIR 35 198 -64 315 342 37 19 chrX 51862328 51862489 -125111651 + MIR SINE MIR 58 221 -41 202 250 0 0 chrX 51863179 51863223 -125110917 + (TAA)n Simple_repeat Simple_repeat 1 44 0 484 215 118 44 chrX 51863233 51863368 -125110772 - MIR SINE MIR -15 247 103 258 277 62 54 chrX 51863386 51863516 -125110624 - L2 LINE L2 0 3272 3142 197 368 21 32 chrX 51863517 51863612 -125110528 - L2 LINE L2 -36 3236 3143 245 318 66 80 chrX 51863940 51864229 -125109911 + L2 LINE L2 2891 3175 -97 863 171 7 0 chrX 51865213 51865353 -125108787 - FAM SINE Alu -43 142 2 21888 52 8 0 chrX 51865953 51871842 -125102298 - L1PA4 LINE L1 -2 6153 154 538 136 12 0 chrX 51871942 51872023 -125102117 - AluS SINE Alu -231 82 1 363 252 44 63 chrX 51872025 51872231 -125101909 + L1P3 LINE L1 1809 2010 -4839 41841 40 1 0 chrX 51872232 51878325 -125095815 + L1PA4 LINE L1 55 6152 -3 1210 207 56 14 chrX 51878322 51878679 -125095461 + L1P3 LINE L1 1955 2326 -4523 * 13881 89 9 4 chrX 51878862 51881442 -125092698 + L1P3 LINE L1 3932 6525 -332 1209 90 0 0 chrX 51881543 51881710 -125092430 - L1P LINE L1 -5967 179 13 8999 149 14 9 chrX 51882396 51885170 -125088970 - L1MA3 LINE L1 0 6305 3514 843 180 93 17 chrX 51885348 51885695 -125088445 + L1PA16 LINE L1 5105 5475 -691 25731 31 0 0 chrX 51885721 51889622 -125084518 - L1PA3 LINE L1 0 6155 2268 10019 58 10 5 chrX 51889622 51890978 -125083162 + L1P LINE L1 675 2036 -4110 2760 165 9 28 chrX 51890974 51891513 -125082627 + L1PA16 LINE L1 5464 5992 -174 * 927 144 48 5 chrX 51891613 51891801 -125082339 - MLT1A1-int LTR MaLR -1539 196 1 941 231 9 13 chrX 51891801 51892026 -125082114 - MLT1A1 LTR MaLR 0 365 142 20050 103 7 0 chrX 51892030 51895928 -125078212 - L1PA15 LINE L1 -16 6149 2195 2175 122 0 0 chrX 51895937 51896233 -125077907 - AluSc SINE Alu -13 296 1 574 222 26 26 chrX 51896236 51896389 -125077751 - MLT1A1 LTR MaLR -212 153 1 465 186 0 59 chrX 51896389 51896489 -125077651 - MLT1A2 LTR MaLR -280 94 1 212 229 83 0 chrX 51896641 51896708 -125077432 - MIR SINE MIR -76 186 113 423 273 124 25 chrX 51897173 51897334 -125076806 + MIR3 SINE MIR 17 193 -15 274 372 50 0 chrX 51897859 51897980 -125076160 + L2 LINE L2 2933 3059 -213 1470 294 59 56 chrX 51898220 51899466 -125074674 + L1MEd LINE L1 3 1251 -4868 355 278 103 81 chrX 51899478 51899751 -125074389 + HAL1 LINE L1 1371 1649 -858 852 279 49 25 chrX 51900063 51900536 -125073604 + L1MEd LINE L1 2238 2721 -3408 4041 203 20 15 chrX 51900587 51902377 -125071763 - L1MB8 LINE L1 0 6178 4378 878 231 40 72 chrX 51902377 51902754 -125071386 - L1MC5 LINE L1 -537 7424 7060 206 152 0 0 chrX 51903074 51903107 -125071033 - L2 LINE L2 -4 3309 3277 194 256 64 39 chrX 51903109 51903187 -125070953 - L2 LINE L2 -1366 1948 1869 2304 89 0 0 chrX 51903313 51903605 -125070535 + AluSq SINE Alu 1 292 -21 21 71 0 0 chrX 51903619 51903661 -125070479 + AT_rich Low_complexity Low_complexity 1 42 0 333 291 165 47 chrX 51904578 51904918 -125069222 - HAL1 LINE L1 -1223 1284 905 330 314 61 82 chrX 51905045 51905290 -125068850 - MIR SINE MIR -5 257 18 344 308 77 19 chrX 51907241 51907397 -125066743 + MIR SINE MIR 45 209 -53 470 321 122 5 chrX 51908000 51908221 -125065919 - MIR SINE MIR -7 255 9 207 211 237 0 chrX 51909753 51909829 -125064311 + MIR SINE MIR 38 131 -77 379 161 76 0 chrX 51910289 51910407 -125063733 + (CCTA)n Simple_repeat Simple_repeat 1 127 0 1483 228 22 12 chrX 51910936 51911474 -125062666 - MER119 DNA MER1_type 0 583 7 1735 272 24 12 chrX 51911728 51912228 -125061912 + L1ME3A LINE L1 5451 5956 -214 741 232 85 11 chrX 51912282 51912459 -125061681 + MER21B LTR ERV1 328 517 -346 368 320 69 44 chrX 51912575 51912778 -125061362 + L1MDa LINE L1 485 692 -5848 1702 202 71 20 chrX 51912949 51913459 -125060681 + L1MDa LINE L1 1021 1556 -4987 1267 28 0 0 chrX 51913498 51913643 -125060497 - L1P2 LINE L1 -371 5783 5639 348 94 0 0 chrX 51913643 51913696 -125060444 + L1PA6 LINE L1 6102 6154 0 2440 243 55 7 chrX 51913697 51914786 -125059354 + L1MDa LINE L1 1865 2998 -3542 4754 168 45 31 chrX 51914840 51915804 -125058336 + L1MD1 LINE L1 5266 6242 0 327 285 57 78 chrX 51915835 51916028 -125058112 + L1ME3A LINE L1 5967 6155 -15 366 283 26 26 chrX 51916038 51916151 -125057989 + L2 LINE L2 2694 2806 -508 354 246 82 57 chrX 51917265 51917387 -125056753 + L2 LINE L2 3185 3309 -4 321 296 113 7 chrX 51917472 51917614 -125056526 + MIR SINE MIR 47 203 -59 321 319 9 17 chrX 51918018 51918134 -125056006 + MER117 DNA MER1_type 81 195 -2 219 278 14 14 chrX 51918573 51918645 -125055495 + CT-rich Low_complexity Low_complexity 3 74 0 186 189 0 0 chrX 51919010 51919047 -125055093 + (CA)n Simple_repeat Simple_repeat 2 38 0 821 249 51 5 chrX 51919375 51919592 -125054548 + MIR SINE MIR 36 262 0 626 68 11 0 chrX 51919799 51919887 -125054253 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 263 351 63 0 chrX 51919910 51920021 -125054119 - L2 LINE L2 -16 3297 3180 312 225 62 0 chrX 51920156 51920236 -125053904 - LTR33 LTR ERVL -436 85 1 272 338 40 36 chrX 51920236 51920461 -125053679 - L2 LINE L2 -939 2375 2150 350 314 25 17 chrX 51921872 51921990 -125052150 + MIR3 SINE MIR 38 156 -52 641 234 78 6 chrX 51922193 51922360 -125051780 - MER112 DNA MER1_type -1 259 81 220 271 0 34 chrX 51922387 51922446 -125051694 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 320 254 0 0 chrX 51922457 51922524 -125051616 - MER112 DNA MER1_type -193 67 1 8096 29 3 8 chrX 51923578 51925264 -125048876 - L1PA3 LINE L1 -3 6152 4473 201 129 0 0 chrX 51925393 51925424 -125048716 + (TC)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 51925425 51925445 -125048695 + (CA)n Simple_repeat Simple_repeat 2 21 0 237 21 21 62 chrX 51926163 51926211 -125047929 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 255 146 0 0 chrX 51926249 51926304 -125047836 + (CATA)n Simple_repeat Simple_repeat 2 56 0 369 0 0 0 chrX 51930479 51930520 -125043620 + (TA)n Simple_repeat Simple_repeat 1 41 0 180 256 116 0 chrX 51933688 51933731 -125040409 - MIR SINE MIR -159 103 56 * 364 275 85 28 chrX 51933706 51933862 -125040278 + MIR3 SINE MIR 34 199 -9 731 181 94 0 chrX 51934192 51934330 -125039810 + FRAM SINE Alu 26 176 0 196 310 56 0 chrX 51934439 51934510 -125039630 + L2 LINE L2 3152 3226 -46 209 216 20 20 chrX 51934537 51934588 -125039552 - L2 LINE L2 -8 3305 3255 685 123 58 91 chrX 51934715 51934869 -125039271 + MER104 DNA Tc2 32 180 0 330 253 13 13 chrX 51934905 51934984 -125039156 - MIR SINE MIR -121 141 63 1655 146 38 25 chrX 51935138 51935454 -125038686 - MER33 DNA MER1_type -4 320 1 236 200 0 43 chrX 51935648 51935718 -125038422 - L1MC5 LINE L1 -39 7922 7856 445 268 72 7 chrX 51935989 51936142 -125037998 + MIR SINE MIR 85 247 -15 498 312 35 25 chrX 51936167 51936369 -125037771 - L3 LINE CR1 -518 1059 856 251 319 69 0 chrX 51936579 51936695 -125037445 + L2 LINE L2 2623 2746 -568 2023 150 0 0 chrX 51936697 51937025 -125037115 + AluSx SINE Alu 1 328 0 1147 257 49 43 chrX 51937097 51937614 -125036526 + L2 LINE L2 2729 3255 -58 255 281 34 84 chrX 51937980 51938158 -125035982 - L3 LINE CR1 -854 723 555 220 294 78 39 chrX 51938399 51938501 -125035639 + L2 LINE L2 3208 3313 0 307 331 41 0 chrX 51938862 51938983 -125035157 + L2 LINE L2 3188 3313 0 314 156 47 16 chrX 51939110 51939174 -125034966 + MER20 DNA MER1_type 1 66 -153 827 250 0 28 chrX 51939176 51939356 -125034784 - FAM SINE Alu 0 175 1 17932 217 20 22 chrX 51939400 51942515 -125031625 + L1PA14 LINE L1 608 3423 -4161 2268 83 10 0 chrX 51942515 51942805 -125031335 + AluY SINE Alu 13 305 -6 17932 217 20 22 chrX 51942805 51946119 -125028021 + L1PA14 LINE L1 3423 6744 -840 966 159 0 0 chrX 51946119 51946264 -125027876 + AluSg/x SINE Alu 158 302 -10 225 0 0 0 chrX 51946275 51946300 -125027840 + (GGA)n Simple_repeat Simple_repeat 3 27 0 679 170 18 0 chrX 51946430 51946542 -125027598 + AluSg/x SINE Alu 186 299 -10 288 0 0 0 chrX 51946542 51946574 -125027566 + (GGA)n Simple_repeat Simple_repeat 1 32 0 4765 154 19 1 chrX 51946574 51947367 -125026773 + L1PA14 LINE L1 6793 7599 0 180 0 0 0 chrX 51947492 51947512 -125026628 + (CA)n Simple_repeat Simple_repeat 2 21 0 1582 316 74 29 chrX 51948272 51948741 -125025399 + L3 LINE CR1 707 1153 -424 2310 174 92 0 chrX 51948741 51949131 -125025009 - MSTB LTR MaLR 0 426 1 1582 316 74 29 chrX 51949131 51949422 -125024718 + L3 LINE CR1 1153 1507 -70 608 0 14 0 chrX 51949422 51949494 -125024646 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1582 316 74 29 chrX 51949494 51949533 -125024607 + L3 LINE CR1 1507 1543 -34 834 256 39 5 chrX 51950518 51950721 -125023419 - L2 LINE L2 0 3313 3104 271 219 125 47 chrX 51951112 51951240 -125022900 + MIR3 SINE MIR 58 195 -13 376 244 95 0 chrX 51951746 51951879 -125022261 + MIR SINE MIR 5 152 -56 188 200 44 0 chrX 51952006 51952051 -125022089 + MIR3 SINE MIR 160 206 -2 1974 100 82 0 chrX 51952911 51953192 -125020948 + AluSx SINE Alu 1 304 -8 805 263 76 99 chrX 51953261 51953683 -125020457 - MLT1L LTR MaLR 0 615 204 1284 258 90 42 chrX 51953732 51954055 -125020085 - MLT1J LTR MaLR -27 484 131 1633 79 9 22 chrX 51954055 51954282 -125019858 + AluSg/x SINE Alu 86 309 -1 1284 258 90 42 chrX 51954282 51954412 -125019728 - MLT1J LTR MaLR -380 131 9 256 242 16 0 chrX 51954418 51954480 -125019660 - MLT1L LTR MaLR -407 208 146 835 236 38 5 chrX 51954495 51954707 -125019433 + MER20 DNA MER1_type 1 219 0 193 354 10 10 chrX 51954740 51954839 -125019301 + L2 LINE L2 2359 2457 -857 594 323 51 23 chrX 51954840 51955057 -125019083 + L2 LINE L2 2719 2941 -373 483 254 167 29 chrX 51955076 51955316 -125018824 + MLT1H LTR MaLR 1 273 -276 275 309 45 72 chrX 51955516 51955781 -125018359 + L2 LINE L2 2626 2883 -431 229 239 15 60 chrX 51956104 51956171 -125017969 + L2 LINE L2 3246 3309 -4 282 254 34 0 chrX 51956440 51956499 -125017641 - MER91 DNA MER1_type 0 140 80 299 273 10 20 chrX 51956888 51956987 -125017153 + MIR SINE MIR 49 146 -62 325 314 32 16 chrX 51957104 51957228 -125016912 + MIR3 SINE MIR 83 208 0 180 161 0 0 chrX 51957371 51957402 -125016738 + MER5A DNA MER1_type 65 95 -94 555 245 22 14 chrX 51957975 51958114 -125016026 - MIR3 SINE MIR -15 193 54 499 351 205 0 chrX 51958849 51959137 -125015003 - L2 LINE L2 0 3272 2926 760 207 152 18 chrX 51959146 51959363 -125014777 - MIR SINE MIR -3 259 14 417 216 118 132 chrX 51960392 51960749 -125013391 + MLT1J LTR MaLR 104 455 -56 21 71 0 0 chrX 51961718 51961760 -125012380 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 51961935 51961965 -125012175 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 51962248 51962277 -125011863 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chrX 51963853 51963895 -125010245 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 51964070 51964100 -125010040 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 51964385 51964414 -125009726 + AT_rich Low_complexity Low_complexity 1 29 0 1894 149 0 20 chrX 51964785 51965086 -125009054 + AluJo SINE Alu 1 295 -17 564 280 58 11 chrX 51966564 51966753 -125007387 - MIR SINE MIR -17 245 48 385 290 200 7 chrX 51966896 51967051 -125007089 - MIR3 SINE MIR -8 200 16 297 89 0 0 chrX 51967347 51967392 -125006748 + (TC)n Simple_repeat Simple_repeat 2 46 0 369 0 0 0 chrX 51967395 51967436 -125006704 + (CA)n Simple_repeat Simple_repeat 2 42 0 504 254 139 6 chrX 51967478 51967643 -125006497 + MIR SINE MIR 6 192 -70 289 271 45 6 chrX 51967932 51968090 -125006050 - MLT1L LTR MaLR -347 164 1 195 125 0 0 chrX 51968298 51968338 -125005802 + (A)n Simple_repeat Simple_repeat 1 40 0 4755 184 46 15 chrX 51968445 51969772 -125004368 + L1PB3 LINE L1 4124 5491 -663 1565 177 0 46 chrX 51969787 51970070 -125004070 + AluJo SINE Alu 16 285 -27 267 103 0 0 chrX 51970084 51970123 -125004017 + (TG)n Simple_repeat Simple_repeat 2 40 0 228 95 0 0 chrX 51970129 51970171 -125003969 - LTR66 LTR ERVL -171 439 398 29 21 0 21 chrX 51970171 51970199 -125003941 + AT_rich Low_complexity Low_complexity 1 29 -17 3768 136 10 31 chrX 51970199 51970874 -125003266 + L1PB3 LINE L1 5494 6154 0 29 21 0 21 chrX 51970874 51970892 -125003248 + AT_rich Low_complexity Low_complexity 29 46 0 209 345 34 59 chrX 51971324 51971443 -125002697 + MIR SINE MIR 31 146 -62 284 340 122 5 chrX 51971551 51971739 -125002401 - L2 LINE L2 0 3313 3104 3796 159 22 1 chrX 51971759 51972489 -125001651 + L1PA12 LINE L1 4624 5368 -778 2084 112 3 20 chrX 51972491 51972786 -125001354 + AluSc SINE Alu 1 290 -19 1820 9 0 0 chrX 51972794 51973007 -125001133 - L1P LINE L1 -1826 4320 4108 7336 39 1 0 chrX 51973007 51973958 -125000182 + L1PA5 LINE L1 5192 6143 -11 333 0 0 0 chrX 51973959 51973996 -125000144 + (TA)n Simple_repeat Simple_repeat 1 37 0 5495 75 19 4 chrX 51973996 51974779 -124999361 + L1PA12 LINE L1 5359 6153 -15 361 289 16 33 chrX 51975155 51975276 -124998864 - MLT2E LTR ERVL -509 119 1 514 333 60 0 chrX 51975317 51975467 -124998673 + MER91A DNA MER1_type 1 159 -37 208 274 0 20 chrX 51975496 51975547 -124998593 + MER91A DNA MER1_type 124 173 -17 315 306 19 12 chrX 51975724 51975884 -124998256 + (ACTG)n Simple_repeat Simple_repeat 2 162 0 261 321 0 0 chrX 51975971 51976077 -124998063 + (ACTG)n Simple_repeat Simple_repeat 1 106 0 3958 45 0 2 chrX 51977021 51977526 -124996614 - L1PA5 LINE L1 -150 6004 5501 344 236 86 63 chrX 51978418 51978592 -124995548 - MIR3 SINE MIR -63 145 6 1883 200 13 3 chrX 51978681 51979061 -124995079 + L1MDa LINE L1 17 400 -6140 402 190 0 45 chrX 51979113 51979173 -124994967 + MLT1C LTR MaLR 292 353 -98 1928 183 0 6 chrX 51979173 51979522 -124994618 + MER7A DNA MER2_type 1 345 -1 402 190 0 45 chrX 51979522 51979564 -124994576 + MLT1C LTR MaLR 353 451 0 10098 188 48 13 chrX 51979564 51981585 -124992555 - ERVL LTR ERVL -1262 4502 2411 5007 211 85 73 chrX 51981588 51983351 -124990789 + L1MDa LINE L1 428 2167 -4373 180 0 0 0 chrX 51983351 51983371 -124990769 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chrX 51983370 51983391 -124990749 + (GA)n Simple_repeat Simple_repeat 2 22 0 5007 211 85 73 chrX 51983371 51983766 -124990374 + L1MDa LINE L1 2167 2581 -3959 392 380 32 23 chrX 51983778 51983999 -124990141 + L1M4 LINE L1 1 223 -6319 515 219 0 7 chrX 51984207 51984358 -124989782 + L1M4 LINE L1 1326 1475 -5171 575 327 49 76 chrX 51984371 51984534 -124989606 + L1PA15-16 LINE L1 10 176 -6672 7233 105 7 21 chrX 51984534 51985620 -124988520 - MER11C LTR ERVK 0 1071 1 575 327 49 76 chrX 51985620 51986196 -124987944 + L1PA15-16 LINE L1 176 729 -6119 1769 260 32 45 chrX 51986259 51987426 -124986714 + L1PA15-16 LINE L1 786 2085 -4764 216 0 0 0 chrX 51987969 51987993 -124986147 + (CAG)n Simple_repeat Simple_repeat 2 25 0 30 103 0 0 chrX 51989094 51989201 -124984939 + AT_rich Low_complexity Low_complexity 1 107 0 272 295 127 18 chrX 51989377 51989543 -124984597 + L2 LINE L2 2113 2296 -1018 1744 146 31 0 chrX 51989725 51990046 -124984094 + L1MA2 LINE L1 5974 6304 0 681 233 41 59 chrX 51990053 51990108 -124984032 + L1M4 LINE L1 2553 2607 -4037 492 31 0 0 chrX 51990108 51990172 -124983968 + L1PA3 LINE L1 6089 6152 -3 681 233 41 59 chrX 51990172 51990466 -124983674 + L1M4 LINE L1 2607 2887 -3757 1841 161 21 0 chrX 51990466 51990745 -124983395 + AluJb SINE Alu 1 285 -27 554 92 0 13 chrX 51990803 51990879 -124983261 + AluSg/x SINE Alu 217 291 -21 1401 265 91 0 chrX 51990898 51991384 -124982756 - L1M4 LINE L1 -3199 3445 2916 * 8508 209 26 29 chrX 51991382 51993126 -124981014 + L1M4 LINE L1 3426 5173 -1471 1516 81 40 0 chrX 51993126 51993349 -124980791 - L1PA13 LINE L1 -2 6161 5930 8508 209 26 29 chrX 51993349 51993607 -124980533 + L1M4 LINE L1 5173 5430 -1214 1993 127 0 7 chrX 51993607 51993915 -124980225 + AluSx SINE Alu 1 306 0 8508 209 26 29 chrX 51993915 51994289 -124979851 + L1M4 LINE L1 5430 5798 -846 340 250 65 0 chrX 51994292 51994384 -124979756 + L1MA2 LINE L1 15 112 -7453 586 106 0 0 chrX 51994385 51994470 -124979670 + L1M1 LINE L1 1432 1516 -6049 29449 107 21 13 chrX 51994484 51999693 -124974447 + L1PA7 LINE L1 1997 7247 -326 8793 28 5 0 chrX 51999693 52001507 -124972633 + L1PA4 LINE L1 4336 6152 -3 2054 103 66 0 chrX 52001513 52001833 -124972307 + L1PA7 LINE L1 7233 7573 0 13211 192 29 3 chrX 52001833 52004344 -124969796 + L1MA2 LINE L1 91 2667 -4898 6407 149 24 5 chrX 52004345 52006470 -124967670 + L1MA2 LINE L1 5566 7723 0 2185 119 3 0 chrX 52006790 52007084 -124967056 - AluSx SINE Alu -17 295 1 4333 132 49 63 chrX 52007686 52008571 -124965569 + L1PB4 LINE L1 5285 6156 0 3015 221 111 74 chrX 52008560 52008850 -124965290 + L1M4c LINE L1 1191 1469 -4913 * 423 36 0 0 chrX 52008850 52008906 -124965234 - L1PA3 LINE L1 0 6155 6100 3015 221 111 74 chrX 52008906 52009073 -124965067 + L1M4c LINE L1 1469 1628 -4754 210 37 0 0 chrX 52009073 52009100 -124965040 + (CAA)n Simple_repeat Simple_repeat 2 28 0 3015 221 111 74 chrX 52009100 52009959 -124964181 + L1M4c LINE L1 1628 2559 -3823 * 6131 157 26 7 chrX 52009942 52011965 -124962175 + L1MA2 LINE L1 4143 6204 -100 1017 112 96 0 chrX 52012085 52012229 -124961911 + L1MA1 LINE L1 6108 6274 -28 312 91 0 0 chrX 52012229 52012273 -124961867 + (TA)n Simple_repeat Simple_repeat 2 45 0 1017 112 96 0 chrX 52012273 52012306 -124961834 + L1MA1 LINE L1 6274 6302 0 3288 251 30 10 chrX 52012314 52013442 -124960698 + L1M4c LINE L1 2523 3673 -2709 2738 237 1 24 chrX 52013444 52013564 -124960576 + L1M4c LINE L1 3733 3854 -2528 1959 211 36 5 chrX 52013564 52013977 -124960163 - MSTB LTR MaLR 0 426 1 2738 237 1 24 chrX 52013977 52014569 -124959571 + L1M4c LINE L1 3854 4429 -1953 3158 233 77 33 chrX 52014597 52015076 -124959064 - L1 LINE L1 -2289 3857 3400 1952 141 3 7 chrX 52015076 52015374 -124958766 - AluSx SINE Alu -15 297 1 3158 233 77 33 chrX 52015374 52016042 -124958098 - L1 LINE L1 -2746 3400 2660 1057 254 233 10 chrX 52016044 52016112 -124958028 + L1M4c LINE L1 4448 4500 -1882 1124 221 65 60 chrX 52016112 52016496 -124957644 + MLT1B LTR MaLR 5 390 0 1057 254 233 10 chrX 52016496 52016924 -124957216 + L1M4c LINE L1 4500 5055 -1327 232 160 80 20 chrX 52017119 52017169 -124956971 + MLT1L LTR MaLR 499 551 -64 231 133 0 0 chrX 52017290 52017335 -124956805 + (T)n Simple_repeat Simple_repeat 1 45 0 7482 31 8 0 chrX 52017336 52018446 -124955694 - L1PA4 LINE L1 -2 6153 5041 906 18 0 0 chrX 52018448 52018557 -124955583 + L1PA4 LINE L1 4963 5071 -1075 1425 160 9 0 chrX 52018583 52018808 -124955332 + MER4A LTR ERV1 436 662 -2 247 194 48 0 chrX 52018809 52018871 -124955269 - L1M4 LINE L1 -2244 3902 3838 * 512 225 31 123 chrX 52018866 52019279 -124954861 - L1M4 LINE L1 -2900 3246 2872 2740 134 7 13 chrX 52019281 52019593 -124954547 + L1PA15 LINE L1 5714 6024 -141 3803 141 15 60 chrX 52019593 52020316 -124953824 + LTR8 LTR ERV1 1 691 0 2740 134 7 13 chrX 52020316 52020451 -124953689 + L1PA15 LINE L1 6024 6158 -7 496 205 76 49 chrX 52020452 52020637 -124953503 + L1MA9 LINE L1 6101 6290 -22 * 3575 163 21 8 chrX 52020631 52021289 -124952851 + L1P LINE L1 3284 3950 -2196 740 78 10 0 chrX 52021286 52021388 -124952752 + L1PA13 LINE L1 6041 6143 -20 * 32 0 0 0 chrX 52021390 52021422 -124952718 + AT_rich Low_complexity Low_complexity 1 32 0 1514 206 127 20 chrX 52021530 52021932 -124952208 - LTR49 LTR ERV1 -29 566 122 4515 181 42 28 chrX 52022033 52023711 -124950429 + L1MA2 LINE L1 2939 4649 -2916 7452 39 5 0 chrX 52023711 52025131 -124949009 - L1PA3 LINE L1 -3 6152 4730 4515 181 42 28 chrX 52025131 52025413 -124948727 + L1MA2 LINE L1 4649 4926 -2639 19697 36 0 1 chrX 52025417 52028598 -124945542 + L1PA3 LINE L1 2975 6155 0 3135 148 5 0 chrX 52028608 52029145 -124944995 + L1MA2 LINE L1 6712 7256 -467 326 325 76 14 chrX 52029282 52029771 -124944369 - L1MEc LINE L1 -4004 2717 2199 6579 74 9 10 chrX 52030126 52030145 -124943995 - L1PA7 LINE L1 0 6154 6136 249 33 0 0 chrX 52030145 52030175 -124943965 + (CA)n Simple_repeat Simple_repeat 2 31 0 6579 74 9 10 chrX 52030175 52031693 -124942447 - L1PA7 LINE L1 -18 6136 4610 19469 143 10 91 chrX 52031695 52032385 -124941755 - L1PA7 LINE L1 -2229 3917 3173 2122 108 29 16 chrX 52032385 52032692 -124941448 - AluY SINE Alu 0 311 1 19469 143 10 91 chrX 52032692 52036251 -124937889 - L1PA7 LINE L1 -2973 3173 12 22 35 0 0 chrX 52036275 52036304 -124937836 + AT_rich Low_complexity Low_complexity 1 29 0 315 288 29 71 chrX 52036352 52036456 -124937684 - L1MEc LINE L1 -5025 1517 1421 2240 186 24 7 chrX 52036456 52036875 -124937265 + MSTB LTR MaLR 1 426 0 315 288 29 71 chrX 52036875 52036940 -124937200 - L1MEc LINE L1 -5121 1421 1355 2312 196 5 0 chrX 52036947 52037392 -124936748 - L1PA16 LINE L1 -4 6162 5716 8672 272 26 6 chrX 52037392 52040178 -124933962 - L1P LINE L1 -1638 4508 1666 308 296 38 21 chrX 52040179 52040365 -124933775 - L1MEc LINE L1 -5090 1450 1262 21 0 0 0 chrX 52040985 52041006 -124933134 + AT_rich Low_complexity Low_complexity 1 21 0 25 102 0 0 chrX 52041070 52041158 -124932982 + AT_rich Low_complexity Low_complexity 1 88 0 3853 205 50 6 chrX 52041296 52042428 -124931712 - L1MB1 LINE L1 -1 6869 5689 6898 56 12 2 chrX 52042430 52043446 -124930694 + L1PA5 LINE L1 5130 6154 0 24 0 0 0 chrX 52043582 52043606 -124930534 + AT_rich Low_complexity Low_complexity 1 24 0 466 206 137 2 chrX 52043632 52043814 -124930326 - L1MB1 LINE L1 -3947 2902 2697 401 0 20 0 chrX 52043817 52043866 -124930274 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 10397 193 29 12 chrX 52043867 52047105 -124927035 - L1PB4 LINE L1 -18 7557 4269 6398 186 46 28 chrX 52047121 52049583 -124924557 + L1MA9 LINE L1 3726 6258 -54 26 0 0 0 chrX 52049958 52049984 -124924156 + AT_rich Low_complexity Low_complexity 1 26 0 241 281 83 0 chrX 52049989 52050085 -124924055 - MLT1J1 LTR MaLR -24 422 319 5101 162 72 136 chrX 52050085 52051200 -124922940 + L1M1 LINE L1 27 1212 -6353 469 110 0 165 chrX 52051200 52051327 -124922813 + MER51B LTR ERV1 1 106 -271 * 748 128 9 0 chrX 52051296 52051405 -124922735 + MER51A LTR ERV1 389 498 -136 * 5101 162 72 136 chrX 52051327 52051784 -124922356 + L1M1 LINE L1 1212 1665 -5900 3031 148 73 12 chrX 52051784 52052359 -124921781 - MER4B LTR ERV1 0 610 1 5101 162 72 136 chrX 52052359 52052379 -124921761 + L1M1 LINE L1 1665 1685 -5880 13668 131 42 12 chrX 52052383 52054719 -124919421 - MER4B-int LTR ERV1 -31 6727 4322 953 152 86 66 chrX 52054724 52054967 -124919173 - MER4B-int LTR ERV1 -2572 4186 3939 279 0 0 0 chrX 52054968 52054999 -124919141 + (TTA)n Simple_repeat Simple_repeat 3 33 0 14527 61 4 1 chrX 52054999 52057626 -124916514 - L1PA5 LINE L1 -18 6136 3505 16321 175 36 15 chrX 52057628 52060900 -124913240 - L1PB4 LINE L1 -4207 3358 17 1196 172 59 4 chrX 52060930 52061168 -124912972 - MSTB LTR MaLR -175 251 1 1518 176 41 14 chrX 52061661 52061956 -124912184 + MSTB LTR MaLR 1 303 -123 514 208 123 32 chrX 52062580 52062734 -124911406 - L2 LINE L2 0 3313 3146 345 287 234 0 chrX 52062741 52062908 -124911232 - MIR SINE MIR -42 220 15 404 333 80 10 chrX 52062999 52063199 -124910941 - MIR SINE MIR -13 249 37 212 309 73 64 chrX 52064132 52064242 -124909898 - MIR SINE MIR -132 130 20 591 207 0 9 chrX 52064676 52064787 -124909353 - MIR SINE MIR -115 147 38 622 265 18 13 chrX 52065132 52065388 -124908752 - L2 LINE L2 -559 2755 2533 1026 260 143 70 chrX 52065959 52066576 -124907564 - L2 LINE L2 -224 3089 2430 235 381 24 53 chrX 52066596 52066843 -124907297 - L2 LINE L2 -531 2783 2544 31093 86 7 7 chrX 52066975 52071487 -124902653 - L1P LINE L1 -1624 4522 11 2431 151 3 0 chrX 52071489 52071874 -124902266 - MER4B-int LTR ERV1 -2804 3954 3569 946 136 142 2 chrX 52071874 52072193 -124901947 + MSTA LTR MaLR 1 427 -1 8202 192 28 7 chrX 52072195 52073812 -124900328 + MSTA-int LTR MaLR 2 1651 0 1960 165 126 5 chrX 52073812 52074194 -124899946 + MSTA LTR MaLR 1 428 0 908 128 13 0 chrX 52074194 52074343 -124899797 - MER4B-int LTR ERV1 -3185 3573 3423 * 6928 138 42 43 chrX 52074327 52075036 -124899104 - MER4B-int LTR ERV1 -3659 3099 2391 2071 141 0 3 chrX 52075036 52075326 -124898814 - AluSx SINE Alu -23 289 1 6928 138 42 43 chrX 52075326 52075898 -124898242 - MER4B-int LTR ERV1 -4367 2391 1820 2285 107 3 0 chrX 52075898 52076188 -124897952 - AluSp SINE Alu -22 291 1 6928 138 42 43 chrX 52076188 52077712 -124896428 - MER4B-int LTR ERV1 -4938 1820 196 1225 225 36 47 chrX 52077709 52078069 -124896071 - MER4B-int LTR ERV1 -4131 2200 1845 * 221 0 35 0 chrX 52078106 52078135 -124896005 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 346 110 12 73 chrX 52078148 52078230 -124895910 - MER4B-int LTR ERV1 -5786 812 736 2203 115 98 13 chrX 52078290 52078750 -124895390 - MER4B-int LTR ERV1 -6035 563 21 1378 136 5 0 chrX 52078770 52078983 -124895157 - MER4B LTR ERV1 0 610 397 4928 135 20 17 chrX 52078989 52079940 -124894200 + L1M1 LINE L1 2658 3611 -3954 466 221 14 43 chrX 52080458 52080598 -124893542 + L1M1 LINE L1 3995 4130 -3435 932 151 5 16 chrX 52080617 52080802 -124893338 + L1M1 LINE L1 2806 2988 -4577 657 249 15 0 chrX 52080798 52080995 -124893145 + L1M1 LINE L1 4133 4332 -3233 * 39343 47 0 3 chrX 52081152 52086269 -124887871 - L1P LINE L1 -1041 5105 1 371 232 40 10 chrX 52086276 52086375 -124887765 - MLT1A1 LTR MaLR -79 286 185 6323 177 64 7 chrX 52086429 52087655 -124886485 + MSTA-int LTR MaLR 357 1651 0 2244 148 114 5 chrX 52087655 52088041 -124886099 + MSTA LTR MaLR 1 428 0 1591 280 60 40 chrX 52088044 52088163 -124885977 + L1ME LINE L1 20 135 -5935 1807 182 0 17 chrX 52088163 52088459 -124885681 + AluJo SINE Alu 1 291 -21 1591 280 60 40 chrX 52088459 52089150 -124884990 + L1ME LINE L1 135 847 -5223 1005 203 139 32 chrX 52089210 52089520 -124884620 + MLT1A1 LTR MaLR 1 343 -22 411 119 5 16 chrX 52089536 52089624 -124884516 + MSTC LTR MaLR 309 409 0 666 288 62 32 chrX 52089636 52090171 -124883969 + L1ME LINE L1 904 1454 -4626 233 204 23 0 chrX 52090171 52090215 -124883925 - Tigger3(Golem) DNA MER2_type -2983 46 2 935 211 20 0 chrX 52090216 52090420 -124883720 + L1ME LINE L1 5361 5568 -594 323 234 80 23 chrX 52090461 52090630 -124883510 - L1ME LINE L1 -542 5579 5398 449 304 34 49 chrX 52090669 52091198 -124882942 - L1ME LINE L1 -1135 5011 4491 1966 149 43 0 chrX 52093258 52093587 -124880553 - MER2 DNA MER2_type 0 344 2 683 296 36 3 chrX 52093715 52094087 -124880053 - L1MC/D LINE L1 -448 5722 5370 10222 155 26 18 chrX 52094107 52097492 -124876648 - L1MA2 LINE L1 0 6304 2892 11338 169 33 19 chrX 52097594 52100704 -124873436 + L1MA2 LINE L1 146 3359 -4206 15327 40 8 0 chrX 52100704 52103345 -124870795 + L1PA4 LINE L1 3505 6154 -1 11338 169 33 19 chrX 52103345 52104511 -124869629 + L1MA2 LINE L1 3359 4506 -3059 5792 176 46 17 chrX 52104496 52105933 -124868207 + L1MA4 LINE L1 3916 5224 -927 * 252 86 0 0 chrX 52105933 52105968 -124868172 + (CAATA)n Simple_repeat Simple_repeat 4 38 0 5792 176 46 17 chrX 52105968 52106553 -124867587 + L1MA4 LINE L1 5224 5791 -360 2125 134 0 56 chrX 52106413 52106590 -124867550 + L1PB1 LINE L1 5798 5945 -206 * 2013 154 0 0 chrX 52106590 52106895 -124867245 + AluSg SINE Alu 1 305 -5 2125 134 0 56 chrX 52106895 52107091 -124867049 + L1PB1 LINE L1 5945 6150 -1 5274 176 18 61 chrX 52107099 52107980 -124866160 + L1MA2 LINE L1 4492 5305 -2260 2259 53 7 0 chrX 52107980 52108257 -124865883 + L1PA3 LINE L1 5872 6155 0 5274 176 18 61 chrX 52108257 52108622 -124865518 + L1MA2 LINE L1 5305 5684 -1881 3907 77 0 0 chrX 52108635 52109142 -124864998 + L1PA7 LINE L1 5593 6099 -55 6605 156 10 2 chrX 52109149 52111109 -124863031 + L1MA2 LINE L1 5748 7723 0 517 76 0 38 chrX 52111122 52111201 -124862939 + MSTA LTR MaLR 345 420 -8 1840 196 20 42 chrX 52111382 52111786 -124862354 + MSTD LTR MaLR 2 396 0 564 202 0 0 chrX 52111822 52111946 -124862194 - L1MEc LINE L1 -4899 1485 1362 * 642 264 39 6 chrX 52111939 52112181 -124861959 + L1MEc LINE L1 1506 1909 -4654 261 0 0 0 chrX 52112190 52112219 -124861921 + (CA)n Simple_repeat Simple_repeat 2 30 0 1890 181 0 0 chrX 52112351 52112660 -124861480 + AluJo SINE Alu 3 311 -1 910 301 26 35 chrX 52112896 52113437 -124860703 + L1MEc LINE L1 2041 2576 -3987 5504 246 31 12 chrX 52113550 52115333 -124858807 + L1MEc LINE L1 2490 4263 -2119 281 185 15 0 chrX 52115340 52115405 -124858735 + CT-rich Low_complexity Low_complexity 1 66 0 790 255 124 32 chrX 52115478 52115865 -124858275 + L2 LINE L2 2695 3121 -192 701 205 144 26 chrX 52115964 52116159 -124857981 + MER90 LTR ERV1 11 228 -386 1305 230 12 0 chrX 52116180 52116432 -124857708 + MER90 LTR ERV1 360 614 0 273 274 32 0 chrX 52117327 52117422 -124856718 + MER89-int LTR ERV1 891 988 -5813 28 29 0 0 chrX 52118296 52118331 -124855809 + AT_rich Low_complexity Low_complexity 1 35 0 4631 207 61 73 chrX 52118348 52119503 -124854637 + L1PB3 LINE L1 12 1179 -5024 401 183 0 0 chrX 52119503 52119574 -124854566 + AluJ/FLAM SINE Alu 1 71 -241 4631 207 61 73 chrX 52119574 52121044 -124853096 + L1PB3 LINE L1 1179 2683 -3520 1339 78 49 54 chrX 52121044 52121249 -124852891 + LTR2B LTR ERV1 1 204 -286 1802 68 0 0 chrX 52121369 52121590 -124852550 + LTR2B LTR ERV1 270 490 0 10796 202 35 13 chrX 52121590 52121654 -124852486 + L1PB3 LINE L1 2680 2741 -3470 2431 127 51 14 chrX 52121654 52122088 -124852052 - LTR7 LTR ERV1 0 450 1 10796 202 35 13 chrX 52122088 52125080 -124849060 + L1PB3 LINE L1 2741 5806 -405 216 285 0 0 chrX 52125082 52125205 -124848935 + (TA)n Simple_repeat Simple_repeat 1 123 0 191 86 0 29 chrX 52125207 52125242 -124848898 + (CA)n Simple_repeat Simple_repeat 2 35 0 2065 159 3 8 chrX 52125242 52125606 -124848534 + L1PB3 LINE L1 5850 6211 0 22 70 0 0 chrX 52125829 52125872 -124848268 + AT_rich Low_complexity Low_complexity 1 43 0 316 65 129 0 chrX 52126061 52126123 -124848017 + L1MA4 LINE L1 6000 6069 -231 1893 143 3 13 chrX 52126125 52126426 -124847714 + AluJb SINE Alu 1 298 -14 1029 184 81 2 chrX 52126452 52126739 -124847401 + L1MA4 LINE L1 5980 6292 -11 22 0 0 0 chrX 52126740 52126762 -124847378 + AT_rich Low_complexity Low_complexity 1 22 0 486 151 0 0 chrX 52126775 52126861 -124847279 + L1PA8 LINE L1 2798 2883 -3320 1402 81 5 5 chrX 52126861 52127070 -124847070 - L1PA7 LINE L1 -692 5480 5272 4908 92 10 0 chrX 52127071 52127744 -124846396 + L1PA7 LINE L1 5472 6151 -3 5309 111 14 27 chrX 52127888 52128786 -124845354 + L1PA8 LINE L1 2872 3758 -2445 8769 104 3 6 chrX 52128787 52130856 -124843284 + L1PA8 LINE L1 4157 6224 -5 5340 117 17 12 chrX 52130864 52132701 -124841439 - L1PA15 LINE L1 -8 6808 4967 207 0 0 0 chrX 52132701 52132724 -124841416 + (CTTG)n Simple_repeat Simple_repeat 2 24 0 1664 195 16 3 chrX 52132722 52133096 -124841044 - AluJb SINE Alu 0 381 4 11487 223 40 15 chrX 52133105 52136802 -124837338 - L1PA15 LINE L1 -1823 4974 1186 21 0 0 0 chrX 52137113 52137134 -124837006 + AT_rich Low_complexity Low_complexity 1 21 0 1947 129 121 62 chrX 52137509 52137913 -124836227 + MSTA LTR MaLR 1 428 0 2002 289 58 63 chrX 52138116 52138623 -124835517 + MER110-int LTR ERV1 1846 2347 -2300 2159 69 48 7 chrX 52138623 52138914 -124835226 + AluY SINE Alu 1 303 -8 2002 289 58 63 chrX 52138914 52139421 -124834719 + MER110-int LTR ERV1 2347 2855 -1792 410 226 140 18 chrX 52139694 52139858 -124834282 - MER110A LTR ERV1 -283 185 2 571 239 19 25 chrX 52139892 52140051 -124834089 - MER119 DNA MER1_type -2 581 424 326 300 20 13 chrX 52140158 52140308 -124833832 - HAL1b LINE L1 -7 1341 1191 1443 217 154 31 chrX 52140338 52140486 -124833654 - MER31B LTR ERV1 0 466 338 1120 240 143 11 chrX 52140486 52140836 -124833304 + MSTD LTR MaLR 1 396 0 1443 217 154 31 chrX 52140836 52141102 -124833038 - MER31B LTR ERV1 -128 338 1 497 319 139 28 chrX 52141226 52141825 -124832315 + L1M4 LINE L1 4170 4834 -1312 2118 132 0 0 chrX 52141827 52142116 -124832024 + AluSx SINE Alu 1 289 -23 2800 121 21 7 chrX 52142624 52143046 -124831094 + MSTA LTR MaLR 1 428 0 4391 197 43 21 chrX 52143142 52143524 -124830616 - L1MB2 LINE L1 -2 6169 5797 273 119 0 0 chrX 52143524 52143566 -124830574 + (TA)n Simple_repeat Simple_repeat 1 42 0 4391 197 43 21 chrX 52143566 52143704 -124830436 - L1MB2 LINE L1 -374 5797 5664 907 77 77 8 chrX 52143704 52143834 -124830306 - MER85 DNA T2_type 0 139 1 4391 197 43 21 chrX 52143834 52144705 -124829435 - L1MB2 LINE L1 -507 5664 4745 324 221 15 0 chrX 52144706 52144774 -124829366 - MER92C LTR ERV1 -2 552 484 442 275 50 55 chrX 52144835 52145017 -124829123 - MER92C LTR ERV1 -373 181 1 2076 98 4 0 chrX 52145429 52145695 -124828445 - AluSx SINE Alu -11 301 35 230 303 26 0 chrX 52145795 52145871 -124828269 + MER110 LTR ERV1 396 473 -18 237 333 10 52 chrX 52145895 52145991 -124828149 + L2 LINE L2 2726 2817 -497 484 145 226 57 chrX 52146004 52146163 -124827977 - MER53 DNA DNA -3 186 1 1959 131 0 11 chrX 52146196 52146479 -124827661 + AluSx SINE Alu 1 280 -32 21 36 0 0 chrX 52146479 52146507 -124827633 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chrX 52146842 52146865 -124827275 + (T)n Simple_repeat Simple_repeat 1 23 0 239 215 15 0 chrX 52147030 52147095 -124827045 + GA-rich Low_complexity Low_complexity 1 66 0 2150 121 7 3 chrX 52147282 52147588 -124826552 + AluSx SINE Alu 1 307 -5 3481 127 19 51 chrX 52147961 52148545 -124825595 + MER34B LTR ERV1 1 565 0 1213 71 0 7 chrX 52148708 52148863 -124825277 + L1PA4 LINE L1 6002 6155 0 2469 83 0 0 chrX 52148894 52149195 -124824945 + AluSx SINE Alu 1 301 -11 308 227 53 13 chrX 52149363 52149438 -124824702 + AluJb SINE Alu 59 136 -166 231 259 0 0 chrX 52149464 52149522 -124824618 - L1M4 LINE L1 -3979 2167 2110 2181 123 0 23 chrX 52149876 52150185 -124823955 - AluSx SINE Alu -10 302 1 369 75 0 0 chrX 52150259 52150312 -124823828 + (CA)n Simple_repeat Simple_repeat 2 54 0 1731 160 6 45 chrX 52150383 52150559 -124823581 - AluJo SINE Alu -11 301 141 180 0 0 0 chrX 52150559 52150579 -124823561 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1731 160 6 45 chrX 52150579 52150715 -124823425 - AluJo SINE Alu -171 141 1 22 35 0 0 chrX 52150762 52150791 -124823349 + AT_rich Low_complexity Low_complexity 1 29 0 240 264 44 44 chrX 52150923 52151014 -124823126 + MER5B DNA MER1_type 64 159 -30 1988 139 3 3 chrX 52151015 52151309 -124822831 - AluSx SINE Alu -17 295 2 213 283 0 0 chrX 52151343 52151396 -124822744 + MIR3 SINE MIR 152 204 -4 733 213 20 71 chrX 52151457 52151654 -124822486 + MER5A DNA MER1_type 3 189 0 243 0 0 0 chrX 52151954 52151981 -124822159 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2039 138 0 0 chrX 52151981 52152263 -124821877 - AluJb SINE Alu -30 282 1 22 0 0 0 chrX 52152272 52152294 -124821846 + AT_rich Low_complexity Low_complexity 1 22 0 1857 133 7 23 chrX 52152765 52153065 -124821075 + AluSx SINE Alu 7 301 -11 333 47 0 0 chrX 52153242 52153285 -124820855 + (TG)n Simple_repeat Simple_repeat 1 43 0 2288 95 7 0 chrX 52153298 52153602 -124820538 - AluSp SINE Alu -7 306 1 225 0 0 0 chrX 52153676 52153701 -124820439 + (TTA)n Simple_repeat Simple_repeat 2 26 0 632 167 111 9 chrX 52153701 52153809 -124820331 - FLAM_C SINE Alu -23 120 2 26 30 0 0 chrX 52153810 52153843 -124820297 + AT_rich Low_complexity Low_complexity 1 33 0 2130 110 0 14 chrX 52154884 52155203 -124818937 - AluSc SINE Alu 0 309 1 1911 162 3 0 chrX 52155205 52155507 -124818633 - AluSx SINE Alu -9 303 1 366 158 57 40 chrX 52155654 52155831 -124818309 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 366 228 41 12 chrX 52155806 52155977 -124818163 + (TA)n Simple_repeat Simple_repeat 2 177 0 376 191 43 7 chrX 52156013 52156154 -124817986 + (TA)n Simple_repeat Simple_repeat 2 147 0 794 183 0 16 chrX 52156312 52156438 -124817702 - FLAM_A SINE Alu -8 125 2 2274 220 48 50 chrX 52156484 52156560 -124817580 - MER67C LTR ERV1 0 710 635 2223 110 10 0 chrX 52156560 52156868 -124817272 + AluSx SINE Alu 1 311 -1 2274 220 48 50 chrX 52156868 52157478 -124816662 - MER67C LTR ERV1 -75 635 25 756 263 70 75 chrX 52157478 52157739 -124816401 - L1ME LINE L1 -378 5784 5523 2258 112 0 0 chrX 52157739 52158034 -124816106 + AluSq SINE Alu 1 295 -18 756 263 70 75 chrX 52158034 52158529 -124815611 - L1ME LINE L1 -639 5523 5023 2585 41 0 0 chrX 52158529 52158824 -124815316 + AluY SINE Alu 1 295 -16 2800 13 0 0 chrX 52158828 52159131 -124815009 + AluYb8 SINE Alu 1 303 -15 180 0 0 0 chrX 52159139 52159159 -124814981 + (T)n Simple_repeat Simple_repeat 1 20 0 6298 77 24 48 chrX 52159161 52161119 -124813021 - SVA Other Other -520 1386 4 343 212 0 45 chrX 52161136 52161268 -124812872 + GA-rich Low_complexity Low_complexity 1 126 0 402 115 0 35 chrX 52161269 52161356 -124812784 + (GGGAGA)n Simple_repeat Simple_repeat 1 84 0 1215 291 83 46 chrX 52161361 52161897 -124812243 - L1ME LINE L1 -1097 5049 4535 1729 157 0 37 chrX 52161897 52162197 -124811943 - AluJo SINE Alu -23 289 1 1215 291 83 46 chrX 52162197 52162310 -124811830 - L1ME LINE L1 -1611 4535 4428 1734 153 3 46 chrX 52162310 52162636 -124811504 - AluJb SINE Alu 0 312 1 1215 291 83 46 chrX 52162636 52163269 -124810871 - L1ME LINE L1 -1718 4428 3686 891 286 26 42 chrX 52163281 52163659 -124810481 - L2 LINE L2 0 3313 2942 2249 209 107 61 chrX 52163742 52164145 -124809995 - L1MD2 LINE L1 -112 6230 5786 2047 156 0 0 chrX 52164145 52164452 -124809688 - AluSx SINE Alu -5 307 1 2249 209 107 61 chrX 52164452 52164683 -124809457 - L1MD2 LINE L1 -556 5786 5567 1689 178 4 4 chrX 52164685 52164992 -124809148 + AluJb SINE Alu 1 307 0 2057 106 51 17 chrX 52165024 52165316 -124808824 - AluSq SINE Alu -11 302 1 669 66 6 17 chrX 52165318 52165428 -124808712 - L1PB2 LINE L1 -180 5971 5864 565 125 0 0 chrX 52165428 52165508 -124808632 + MER21B-int LTR ERV1 4060 4139 -52 4202 194 48 10 chrX 52165597 52166407 -124807733 + MER21B LTR ERV1 1 841 -22 1372 234 35 69 chrX 52166426 52166601 -124807539 - L1MD2 LINE L1 -651 5574 5395 2211 104 3 0 chrX 52166601 52166889 -124807251 - AluSx SINE Alu -23 289 1 1372 234 35 69 chrX 52166889 52167194 -124806946 - L1MD2 LINE L1 -830 5395 5081 180 0 0 0 chrX 52167194 52167214 -124806926 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1372 234 35 69 chrX 52167214 52167228 -124806912 - L1MD2 LINE L1 -1144 5081 5068 1736 160 0 4 chrX 52167228 52167503 -124806637 - AluJb SINE Alu -38 274 1 1372 234 35 69 chrX 52167503 52167809 -124806331 - L1MD2 LINE L1 -1157 5068 4808 * 3628 143 81 8 chrX 52167783 52168435 -124805705 + L1MC3 LINE L1 7085 7784 -1 270 146 0 0 chrX 52168445 52168486 -124805654 + Alu SINE Alu 1 41 -260 1437 246 36 17 chrX 52168501 52168977 -124805163 - L1MD2 LINE L1 -1467 4662 4178 298 122 0 0 chrX 52169062 52169103 -124805037 - Alu SINE Alu -259 41 1 376 220 70 0 chrX 52169115 52169215 -124804925 - L1MD2 LINE L1 -3226 2903 2797 313 221 0 29 chrX 52169215 52169283 -124804857 + T-rich Low_complexity Low_complexity 4 69 0 743 184 18 14 chrX 52169292 52169621 -124804519 + CT-rich Low_complexity Low_complexity 1 330 0 1782 182 0 3 chrX 52169627 52169940 -124804200 - AluJb SINE Alu 0 312 1 1738 234 41 24 chrX 52169940 52170046 -124804094 - L1MD2 LINE L1 -3317 2812 2709 1940 210 54 52 chrX 52170046 52170550 -124803590 + MLT1D LTR MaLR 1 505 0 1738 234 41 24 chrX 52170550 52170945 -124803195 - L1MD2 LINE L1 -3420 2709 2299 3382 218 92 129 chrX 52170986 52171702 -124802438 - L1 LINE L1 -1592 4554 3813 835 192 20 61 chrX 52171702 52171900 -124802240 - AluJo SINE Alu 0 312 123 3382 218 92 129 chrX 52171900 52171943 -124802197 - L1 LINE L1 -2333 3813 3770 2264 126 0 0 chrX 52171943 52172253 -124801887 - AluSx SINE Alu -2 310 1 3382 218 92 129 chrX 52172253 52172394 -124801746 - L1 LINE L1 -2376 3770 3625 2306 96 3 34 chrX 52172394 52172717 -124801423 - AluSq SINE Alu 0 313 1 3382 218 92 129 chrX 52172717 52172956 -124801184 - L1 LINE L1 -2521 3625 3379 5538 77 47 68 chrX 52172956 52173814 -124800326 - L1MA3 LINE L1 0 6305 5466 1503 218 7 7 chrX 52173818 52174133 -124800007 - AluJo SINE Alu 0 312 1 3382 218 92 129 chrX 52174133 52174560 -124799580 - L1 LINE L1 -2770 3376 2935 1628 155 47 37 chrX 52174560 52174856 -124799284 + AluJo SINE Alu 1 299 -13 3382 218 92 129 chrX 52174856 52175224 -124798916 - L1 LINE L1 -3211 2935 2499 2271 109 0 0 chrX 52175224 52175526 -124798614 + AluSx SINE Alu 1 302 -10 3382 218 92 129 chrX 52175526 52175640 -124798500 - L1 LINE L1 -3647 2499 2382 282 262 81 35 chrX 52175631 52175650 -124798490 - L1MD2 LINE L1 -4940 1179 1162 * 1351 165 12 96 chrX 52175650 52175984 -124798156 - AluJo SINE Alu -6 306 1 282 262 81 35 chrX 52175984 52176136 -124798004 - L1MD2 LINE L1 -4957 1162 1000 300 330 61 0 chrX 52176140 52176255 -124797885 - HAL1 LINE L1 -924 1583 1462 29 60 0 0 chrX 52176272 52176322 -124797818 + AT_rich Low_complexity Low_complexity 1 50 0 347 368 119 15 chrX 52176370 52176631 -124797509 - L1MD2 LINE L1 -5357 762 475 3188 209 25 12 chrX 52176783 52177424 -124796716 + MER82 DNA MER2_type 2 650 -3 1849 152 0 23 chrX 52177870 52178173 -124795967 + AluJo SINE Alu 1 296 -16 2037 146 0 13 chrX 52178336 52178651 -124795489 - AluSx SINE Alu -1 311 1 201 265 108 12 chrX 52178691 52178774 -124795366 - MIR SINE MIR -74 188 98 309 329 0 0 chrX 52178805 52178887 -124795253 - MIR SINE MIR -82 126 45 1886 140 0 45 chrX 52179483 52179797 -124794343 - AluSx SINE Alu -12 300 1 1725 194 0 3 chrX 52179933 52180226 -124793914 + AluJb SINE Alu 1 292 -20 319 290 41 85 chrX 52180611 52180904 -124793236 - LTR16C LTR ERVL 0 491 212 308 218 20 40 chrX 52180918 52181019 -124793121 - L1M4 LINE L1 -5231 1311 1213 2672 230 48 98 chrX 52181022 52181585 -124792555 - L1M4 LINE L1 -5435 1107 620 1418 186 58 18 chrX 52181585 52181859 -124792281 - AluJb SINE Alu -26 286 2 2672 230 48 98 chrX 52181859 52182357 -124791783 - L1M4 LINE L1 -5922 620 99 1089 226 76 11 chrX 52182372 52182727 -124791413 + L1ME2 LINE L1 5219 5594 -572 3645 120 24 61 chrX 52182739 52183283 -124790857 - L1MA5 LINE L1 -4 6296 5779 2272 123 0 3 chrX 52183283 52183592 -124790548 - AluSq SINE Alu -5 308 1 3645 120 24 61 chrX 52183592 52183706 -124790434 - L1MA5 LINE L1 -521 5779 5662 1370 181 9 9 chrX 52183707 52184006 -124790134 - L1 LINE L1 -1474 4672 4371 1577 169 16 51 chrX 52184006 52184319 -124789821 - AluJo SINE Alu -7 305 4 1370 181 9 9 chrX 52184319 52184334 -124789806 - L1 LINE L1 -1774 4372 4358 2185 132 3 0 chrX 52184338 52184649 -124789491 - AluSx SINE Alu 0 312 1 1100 253 57 0 chrX 52184723 52185024 -124789116 + L1ME2 LINE L1 5654 5971 -193 2320 114 0 0 chrX 52185486 52185793 -124788347 - AluSx SINE Alu -5 307 1 427 277 0 0 chrX 52186950 52187051 -124787089 - MER5A DNA MER1_type -80 109 9 226 208 42 83 chrX 52187394 52187466 -124786674 + MIR SINE MIR 28 97 -111 263 210 37 37 chrX 52188406 52188487 -124785653 + MIR SINE MIR 71 151 -111 948 254 32 5 chrX 52188574 52188791 -124785349 + MER58A DNA MER1_type 2 224 0 342 254 162 14 chrX 52189037 52189179 -124784961 - L1ME4a LINE L1 -133 5988 5826 436 200 12 12 chrX 52189204 52189289 -124784851 + L2 LINE L2 3227 3311 -2 318 228 41 24 chrX 52189290 52189413 -124784727 - L1ME4a LINE L1 -306 5815 5691 522 266 21 21 chrX 52189557 52189700 -124784440 + MIR SINE MIR 17 159 -103 704 174 0 33 chrX 52190157 52190278 -124783862 - FLAM_C SINE Alu -16 117 1 2093 114 34 3 chrX 52190284 52190582 -124783558 - AluSx SINE Alu -5 307 1 417 254 88 78 chrX 52191414 52191631 -124782509 + MIR SINE MIR 44 262 0 223 283 0 0 chrX 52191717 52191770 -124782370 - MIR3 SINE MIR -5 203 151 235 284 84 32 chrX 52191782 52191877 -124782263 + MER5B DNA MER1_type 17 116 -62 381 252 17 42 chrX 52192170 52192289 -124781851 - MIR SINE MIR -61 147 32 189 128 26 26 chrX 52192287 52192326 -124781814 - L2 LINE L2 0 3272 3234 * 2368 89 0 10 chrX 52192454 52192768 -124781372 - AluSx SINE Alu -1 311 1 312 341 14 51 chrX 52192860 52192998 -124781142 - L2 LINE L2 -82 3190 3058 604 197 91 15 chrX 52193078 52193210 -124780930 + MER96 DNA MER1_type? 6 147 -28 461 211 0 0 chrX 52194268 52194344 -124779796 + AluJ/FLAM SINE Alu 2 77 -235 339 179 13 39 chrX 52194344 52194422 -124779718 - MER31-int LTR ERV1 -1680 3256 3181 21 0 0 0 chrX 52194609 52194630 -124779510 + AT_rich Low_complexity Low_complexity 1 21 0 420 194 0 0 chrX 52194755 52194822 -124779318 + FLAM_A SINE Alu 1 67 -65 251 317 42 66 chrX 52194879 52195046 -124779094 - MER31-int LTR ERV1 -1870 3066 2904 365 237 57 96 chrX 52195157 52195334 -124778806 - MER92C LTR ERV1 -365 189 20 212 325 38 38 chrX 52195836 52195916 -124778224 + MIR SINE MIR 18 97 -165 312 225 38 0 chrX 52196087 52196167 -124777973 - MIR SINE MIR -121 141 59 1404 189 33 56 chrX 52196167 52196329 -124777811 - AluJb SINE Alu -17 295 142 2291 122 0 0 chrX 52196329 52196640 -124777500 - AluSx SINE Alu -1 311 1 1404 189 33 56 chrX 52196640 52196779 -124777361 - AluJb SINE Alu -170 142 1 252 307 80 7 chrX 52197084 52197221 -124776919 - L1ME LINE L1 -302 5819 5673 361 196 45 75 chrX 52197252 52197385 -124776755 - FLAM_C SINE Alu 0 133 5 2294 107 0 3 chrX 52198166 52198474 -124775666 - AluSq SINE Alu -4 309 3 475 182 0 50 chrX 52198664 52198763 -124775377 + MIR3 SINE MIR 76 169 -39 983 261 6 52 chrX 52199038 52199368 -124774772 + L1M4 LINE L1 9 323 -6219 227 182 23 0 chrX 52199380 52199424 -124774716 + L1M4 LINE L1 382 426 -6116 285 140 0 183 chrX 52199498 52199591 -124774549 - AluJ/FLAM SINE Alu -222 80 5 21 0 0 0 chrX 52199603 52199624 -124774516 + AT_rich Low_complexity Low_complexity 1 21 0 836 174 13 19 chrX 52199632 52199947 -124774193 + CT-rich Low_complexity Low_complexity 1 313 0 1651 184 4 0 chrX 52199951 52200223 -124773917 - AluSx SINE Alu -39 273 1 3979 210 32 43 chrX 52200226 52201434 -124772706 + L1M4 LINE L1 450 1644 -4898 951 206 51 74 chrX 52201521 52201953 -124772187 + L1M4 LINE L1 3430 3851 -2793 523 277 14 14 chrX 52201958 52202099 -124772041 - MER8 DNA MER2_type -1 238 98 1198 166 36 4 chrX 52202141 52202394 -124771746 + L1MB7 LINE L1 5883 6143 -41 1064 165 6 0 chrX 52202396 52202578 -124771562 - MSTB1 LTR MaLR 0 432 250 452 134 0 0 chrX 52202582 52202649 -124771491 - MSTB1 LTR MaLR -362 70 4 403 346 16 8 chrX 52203232 52203377 -124770763 - MIR3 SINE MIR -24 184 39 4670 188 59 29 chrX 52204231 52206110 -124768030 - L1MC2 LINE L1 -19 6325 4396 309 242 11 88 chrX 52206147 52206238 -124767902 + MER5A DNA MER1_type 15 98 -91 379 284 65 0 chrX 52206506 52206641 -124767499 + MIR SINE MIR 35 176 -62 2023 137 19 3 chrX 52207546 52207853 -124766287 + AluJb SINE Alu 1 312 0 2273 103 0 0 chrX 52208051 52208353 -124765787 - AluSx SINE Alu -10 302 1 2128 109 0 3 chrX 52209140 52209449 -124764691 - AluSx SINE Alu 0 308 1 1632 227 81 45 chrX 52209481 52209536 -124764604 - MLT1H1 LTR MaLR -2 553 501 1953 155 21 27 chrX 52209536 52209872 -124764268 + MER1B DNA MER1_type 4 337 0 1632 227 81 45 chrX 52209872 52210350 -124763790 - MLT1H1 LTR MaLR -54 501 1 512 206 2 1 chrX 52212306 52212422 -124761718 + MLT1A2 LTR MaLR 255 383 -7 585 286 59 51 chrX 52212591 52212758 -124761382 - MIR SINE MIR -5 257 86 2537 132 42 5 chrX 52212758 52213168 -124760972 + MSTA LTR MaLR 1 425 -3 585 286 59 51 chrX 52213168 52213255 -124760885 - MIR SINE MIR -176 86 1 751 196 145 0 chrX 52213265 52213444 -124760696 - MER3 DNA MER1_type -4 205 1 361 167 0 0 chrX 52213768 52213828 -124760312 - AluJ/FLAM SINE Alu -242 60 1 1774 141 60 15 chrX 52214194 52214527 -124759613 - MER7A DNA MER2_type 0 346 1 474 267 30 0 chrX 52214527 52214662 -124759478 - MIR SINE MIR -23 239 101 584 221 44 13 chrX 52214805 52214963 -124759177 + LTR41 LTR ERVL 8 170 -603 1747 159 0 52 chrX 52215401 52215709 -124758431 - AluJb SINE Alu -16 296 5 335 247 101 63 chrX 52215887 52216045 -124758095 - MIR SINE MIR -18 244 81 40226 52 1 10 chrX 52216203 52222413 -124751727 - L1PA5 LINE L1 0 6154 3 3782 37 0 0 chrX 52222413 52222929 -124751211 - L1P LINE L1 -727 5428 4913 424 172 306 0 chrX 52223028 52223208 -124750932 + Charlie5 DNA MER1_type 2390 2624 0 318 209 0 0 chrX 52223341 52223408 -124750732 + MIR SINE MIR 183 249 -13 662 69 10 0 chrX 52224073 52224174 -124749966 + (TCCTG)n Simple_repeat Simple_repeat 4 105 0 2094 103 0 11 chrX 52224174 52224455 -124749685 - AluSp SINE Alu -35 278 1 24 0 0 0 chrX 52224562 52224586 -124749554 + AT_rich Low_complexity Low_complexity 1 24 0 250 225 154 18 chrX 52224654 52224823 -124749317 - HAL1 LINE L1 -92 2415 2224 230 270 80 22 chrX 52224937 52225074 -124749066 - HAL1b LINE L1 -457 891 747 227 278 42 14 chrX 52225122 52225194 -124748946 - MIR SINE MIR -187 75 2 372 324 54 14 chrX 52226340 52226488 -124747652 - MIR SINE MIR -106 156 3 1289 213 46 46 chrX 52226539 52226956 -124747184 + L1ME3A LINE L1 5744 6160 -10 1080 241 24 8 chrX 52227160 52227413 -124746727 + MIR SINE MIR 6 262 0 1581 201 25 3 chrX 52227498 52227782 -124746358 - AluJo SINE Alu -22 290 1 473 281 38 45 chrX 52227782 52228043 -124746097 - L1ME LINE L1 -400 5764 5506 2804 32 0 37 chrX 52228308 52228719 -124745421 + L1PA4 LINE L1 5770 6166 0 675 227 0 0 chrX 52229160 52229314 -124744826 + MER3 DNA MER1_type 35 188 -21 597 215 57 68 chrX 52229411 52229588 -124744552 - MIR SINE MIR -72 190 16 822 162 9 101 chrX 52229735 52229893 -124744247 - Tigger1 DNA MER2_type -3 2415 2283 2419 96 0 6 chrX 52229893 52230207 -124743933 - AluSx SINE Alu 0 312 1 822 162 9 101 chrX 52230207 52230276 -124743864 - Tigger1 DNA MER2_type -135 2283 2209 * 865 154 0 31 chrX 52230273 52230435 -124743705 - Tigger1 DNA MER2_type -2261 157 1 3942 115 57 3 chrX 52230463 52231044 -124743096 + LTR9 LTR ERV1 1 612 0 1548 188 111 14 chrX 52231162 52231192 -124742948 - MLT2D LTR ERVL -8 406 380 342 45 0 0 chrX 52231192 52231236 -124742904 + (TG)n Simple_repeat Simple_repeat 2 45 0 1548 188 111 14 chrX 52231236 52231573 -124742567 - MLT2D LTR ERVL -34 380 3 567 104 24 48 chrX 52231617 52231742 -124742398 + Tigger7 DNA MER2_type 2362 2483 -104 452 260 134 82 chrX 52231817 52231919 -124742221 - MLT1L LTR MaLR -207 408 313 1736 168 16 10 chrX 52231919 52232222 -124741918 - AluSx SINE Alu -7 305 1 452 260 134 82 chrX 52232222 52232507 -124741633 - MLT1L LTR MaLR -302 313 1 292 303 35 31 chrX 52232627 52232779 -124741361 - MIR SINE MIR -87 121 13 1979 125 109 60 chrX 52232806 52233237 -124740903 - LTR47A LTR ERVL 0 452 1 23 0 0 0 chrX 52233296 52233319 -124740821 + AT_rich Low_complexity Low_complexity 1 23 0 614 234 50 0 chrX 52233371 52233512 -124740628 - MIR3 SINE MIR -30 178 31 225 322 69 0 chrX 52233684 52233771 -124740369 + MIR3 SINE MIR 107 199 -9 260 304 89 0 chrX 52234340 52234452 -124739688 - MIR SINE MIR -44 218 97 307 183 25 12 chrX 52234655 52234736 -124739404 - MLT1H LTR MaLR -21 569 288 553 309 26 17 chrX 52234851 52235084 -124739056 - MLT1H LTR MaLR -289 260 26 274 296 28 0 chrX 52235204 52235275 -124738865 + MIR SINE MIR 39 111 -97 2440 89 3 0 chrX 52235473 52235776 -124738364 + AluSc SINE Alu 1 304 -5 262 362 95 30 chrX 52235877 52236109 -124738031 + L3b LINE CR1 1293 1539 -44 614 213 25 166 chrX 52236172 52236449 -124737691 - MIR SINE MIR -11 251 14 631 240 91 0 chrX 52236478 52236632 -124737508 + MIR SINE MIR 61 228 -34 6735 78 11 5 chrX 52237711 52238690 -124735450 - L1MA1 LINE L1 0 6302 5318 1280 207 37 35 chrX 52238691 52239039 -124735101 - L1M1 LINE L1 -7204 361 13 1363 123 106 47 chrX 52239081 52239316 -124734824 - AluJb SINE Alu -59 253 5 222 250 29 110 chrX 52239761 52239897 -124734243 - L2 LINE L2 -214 3058 2934 298 317 50 0 chrX 52240029 52240149 -124733991 + MIR SINE MIR 67 192 -70 262 327 69 0 chrX 52240251 52240352 -124733788 - L2 LINE L2 -5 3308 3201 2121 114 0 3 chrX 52240852 52241141 -124732999 + AluSq SINE Alu 1 288 -25 24 0 0 0 chrX 52241144 52241168 -124732972 + AT_rich Low_complexity Low_complexity 1 24 0 196 397 27 20 chrX 52241530 52241676 -124732464 - L2 LINE L2 -298 2974 2828 201 337 32 0 chrX 52241862 52241957 -124732183 - MIR SINE MIR -113 149 52 531 252 64 36 chrX 52241989 52242239 -124731901 + MIR SINE MIR 3 259 -3 916 292 73 56 chrX 52242416 52243008 -124731132 - L2 LINE L2 -4 3309 2702 376 315 36 30 chrX 52243038 52243234 -124730906 - MIR SINE MIR -37 225 30 2221 110 0 0 chrX 52243269 52243559 -124730581 + AluSx SINE Alu 1 290 -22 3462 187 25 55 chrX 52243567 52243792 -124730348 - L1MB4 LINE L1 -13 6167 5937 1995 150 10 0 chrX 52243792 52244085 -124730055 + AluSx SINE Alu 1 296 -16 3462 187 25 55 chrX 52244085 52244566 -124729574 - L1MB4 LINE L1 -243 5937 5443 1463 172 34 22 chrX 52244566 52244833 -124729307 - AluJo SINE Alu -22 290 21 3462 187 25 55 chrX 52244833 52245021 -124729119 - L1MB4 LINE L1 -737 5443 5300 2295 107 0 3 chrX 52245021 52245319 -124728821 - AluSq SINE Alu -16 297 1 3462 187 25 55 chrX 52245319 52245382 -124728758 - L1MB4 LINE L1 -880 5300 5237 453 296 154 0 chrX 52245391 52245611 -124728529 - L1ME4a LINE L1 -179 5942 5689 588 274 91 33 chrX 52245768 52246309 -124727831 + L1 LINE L1 2653 3224 -2922 298 269 25 8 chrX 52246696 52246815 -124727325 + L1 LINE L1 4007 4127 -2019 2166 114 23 3 chrX 52246846 52247152 -124726988 + AluSq SINE Alu 1 312 -1 1465 126 15 11 chrX 52247403 52247672 -124726468 + LTR1 LTR ERV1 1 270 -515 2913 143 30 30 chrX 52247708 52248282 -124725858 + LTR1 LTR ERV1 212 785 0 407 325 29 15 chrX 52248282 52248488 -124725652 + L1 LINE L1 4378 4586 -1560 538 350 67 26 chrX 52248517 52248860 -124725280 + L1 LINE L1 4672 5028 -1118 2854 202 98 36 chrX 52248910 52249170 -124724970 + L1MB7 LINE L1 3961 4203 -1943 243 61 0 0 chrX 52249170 52249203 -124724937 + (CA)n Simple_repeat Simple_repeat 2 34 0 2854 202 98 36 chrX 52249203 52249672 -124724468 + L1MB7 LINE L1 4203 4763 -1383 2245 113 3 0 chrX 52249672 52249973 -124724167 + AluSq SINE Alu 1 302 -11 2854 202 98 36 chrX 52249973 52250169 -124723971 + L1MB7 LINE L1 4763 4945 -1201 1907 190 27 2 chrX 52250169 52250579 -124723561 + L1MB7 LINE L1 5765 6184 0 280 303 164 26 chrX 52250868 52251020 -124723120 + MIR SINE MIR 84 256 -6 2175 79 0 66 chrX 52251098 52251401 -124722739 - AluSx SINE Alu -29 283 1 452 261 44 1 chrX 52252588 52252724 -124721416 + MIR SINE MIR 7 148 -60 189 0 0 0 chrX 52252844 52252865 -124721275 + (T)n Simple_repeat Simple_repeat 1 21 0 248 326 51 20 chrX 52252945 52253043 -124721097 - L2 LINE L2 -18 3254 3154 210 144 206 0 chrX 52253610 52253674 -124720466 - MIR SINE MIR -108 100 31 2108 144 3 0 chrX 52253729 52254027 -124720113 + AluSq SINE Alu 1 299 -14 2196 213 22 55 chrX 52254172 52254753 -124719387 + MER68 LTR ERV1 1 562 0 3249 182 106 9 chrX 52254880 52255654 -124718486 - L1MC2 LINE L1 -1 6343 5495 334 123 35 0 chrX 52255655 52255712 -124718428 - MADE1 DNA Mariner -21 59 1 304 173 37 0 chrX 52255713 52255794 -124718346 - L1MCb LINE L1 -1621 4943 4860 * 588 122 8 57 chrX 52255792 52255915 -124718225 - L1MA2 LINE L1 -401 5903 5787 279 225 25 25 chrX 52255885 52256005 -124718135 - L1MCb LINE L1 -2848 3716 3597 * 38822 68 3 7 chrX 52256032 52262204 -124711936 - L1PA5 LINE L1 -2 6152 4 651 242 27 0 chrX 52262208 52262431 -124711709 - L1MCb LINE L1 -2996 3568 3340 689 207 0 7 chrX 52262446 52262581 -124711559 - AluJb SINE Alu -178 134 1 1660 249 24 28 chrX 52262596 52263251 -124710889 - L1MCb LINE L1 -3246 3318 2666 4175 117 39 38 chrX 52263257 52263993 -124710147 - L1PB3 LINE L1 -5 6149 5413 40775 35 22 1 chrX 52264017 52270041 -124704099 - L1PA2 LINE L1 -1 6154 2 1364 168 40 3 chrX 52270041 52270448 -124703692 - L1PB3 LINE L1 -727 5427 5010 * 3341 232 74 37 chrX 52270423 52271933 -124702207 - L1MCb LINE L1 -3999 2746 1020 2144 142 0 0 chrX 52271933 52272242 -124701898 - AluSx SINE Alu -3 309 1 3341 232 74 37 chrX 52272242 52272572 -124701568 - L1MCb LINE L1 -5725 1020 704 565 249 52 30 chrX 52272572 52272805 -124701335 - L1MCb LINE L1 -6166 398 161 246 310 20 50 chrX 52272814 52272914 -124701226 + MIR3 SINE MIR 99 195 -13 273 292 6 58 chrX 52273236 52273407 -124700733 + T-rich Low_complexity Low_complexity 4 165 0 1731 157 39 7 chrX 52273590 52273870 -124700270 - AluJb SINE Alu -23 289 1 256 122 0 0 chrX 52274064 52274105 -124700035 - L2 LINE L2 -1 3312 3272 2193 90 14 3 chrX 52274334 52274652 -124699488 - AluSg SINE Alu 0 310 1 367 293 46 120 chrX 52275403 52275662 -124698478 - L2 LINE L2 -7 3265 3026 189 154 0 0 chrX 52276626 52276665 -124697475 + (ATG)n Simple_repeat Simple_repeat 1 39 0 398 315 162 9 chrX 52277119 52277341 -124696799 - MIR SINE MIR -6 256 1 1357 178 0 0 chrX 52277374 52277587 -124696553 - AluJo SINE Alu -13 299 87 956 217 39 5 chrX 52278026 52278233 -124695907 - MER20 DNA MER1_type -5 214 1 187 296 0 0 chrX 52278245 52278299 -124695841 + MIR SINE MIR 105 158 -104 387 352 148 16 chrX 52278315 52278565 -124695575 - L2 LINE L2 -21 3251 2969 2184 136 3 0 chrX 52278567 52278972 -124695168 + AluSx SINE Alu 1 406 0 471 233 0 25 chrX 52279049 52279169 -124694971 - MER94 DNA DNA -14 120 4 23 78 0 0 chrX 52279468 52279519 -124694621 + AT_rich Low_complexity Low_complexity 1 51 0 2358 81 7 16 chrX 52279526 52279836 -124694304 + AluY SINE Alu 1 307 -4 432 77 0 0 chrX 52280941 52281006 -124693134 + (CA)n Simple_repeat Simple_repeat 2 66 0 2081 115 0 0 chrX 52281473 52281784 -124692356 - AluSp SINE Alu 0 316 6 224 250 0 0 chrX 52282458 52282502 -124691638 - L2 LINE L2 -19 3253 3210 411 266 36 43 chrX 52282763 52282902 -124691238 + MIR SINE MIR 20 157 -105 438 409 113 5 chrX 52282906 52283312 -124690828 - L2 LINE L2 -13 3259 2810 366 307 7 85 chrX 52283634 52283678 -124690462 - MIR3 SINE MIR -63 145 99 2047 95 15 0 chrX 52283678 52283962 -124690178 - AluSx SINE Alu 0 304 17 366 307 7 85 chrX 52283962 52284069 -124690071 - MIR3 SINE MIR -109 99 5 2327 90 10 0 chrX 52284160 52284450 -124689690 + AluSg SINE Alu 1 293 -17 407 246 35 63 chrX 52286746 52286888 -124687252 - MIR3 SINE MIR -46 162 25 1836 147 49 0 chrX 52286890 52287176 -124686964 - AluSx SINE Alu -12 300 1 1274 186 111 21 chrX 52287453 52287733 -124686407 - AluJo SINE Alu -5 307 3 203 194 0 0 chrX 52287801 52287837 -124686303 + (TAA)n Simple_repeat Simple_repeat 1 36 0 372 313 0 0 chrX 52287838 52287953 -124686187 - MIR SINE MIR 0 262 148 325 289 52 0 chrX 52288137 52288234 -124685906 - MIR3 SINE MIR -18 190 89 1376 175 61 93 chrX 52288471 52288848 -124685292 - MLT1A1 LTR MaLR 0 365 1 628 300 76 0 chrX 52288911 52289148 -124684992 + MIR SINE MIR 5 259 -3 251 264 85 54 chrX 52289899 52290028 -124684112 - MIR SINE MIR -72 136 21 475 267 0 55 chrX 52290442 52290594 -124683546 + MIR SINE MIR 34 176 -67 344 343 79 7 chrX 52291382 52291522 -124682618 - MIR3 SINE MIR -11 197 48 711 65 0 0 chrX 52291877 52291970 -124682170 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 2167 123 10 0 chrX 52291979 52292280 -124681860 - AluSx SINE Alu -8 304 1 291 287 72 107 chrX 52294229 52294477 -124679663 + L2 LINE L2 1801 2033 -1281 1633 157 95 0 chrX 52294477 52294751 -124679389 - AluJo SINE Alu -12 300 1 291 287 72 107 chrX 52294751 52294875 -124679265 + L2 LINE L2 2033 2160 -1154 275 251 74 47 chrX 52294883 52295098 -124679042 - L1MEc LINE L1 -5516 880 660 717 357 11 3 chrX 52295152 52295499 -124678641 - L1MEc LINE L1 -6025 371 22 234 306 59 12 chrX 52295503 52295588 -124678552 + L2 LINE L2 2211 2299 -1015 278 357 39 8 chrX 52296604 52296733 -124677407 - L2 LINE L2 0 3313 3181 1558 36 0 10 chrX 52297418 52297614 -124676526 + L1PA5 LINE L1 5961 6154 0 292 179 0 0 chrX 52298448 52298504 -124675636 - L1ME3 LINE L1 0 6162 6107 1509 221 68 72 chrX 52298539 52298917 -124675223 - L1ME3A LINE L1 -49 6121 5744 3629 201 53 43 chrX 52298917 52299806 -124674334 + MER54A LTR ERVL 2 899 -2 1509 221 68 72 chrX 52299806 52299956 -124674184 - L1ME3A LINE L1 -426 5744 5595 2803 224 31 46 chrX 52299984 52300834 -124673306 - L1MB7 LINE L1 -31 6153 5306 2314 113 0 0 chrX 52300834 52301145 -124672995 - AluSq SINE Alu -2 311 1 2803 224 31 46 chrX 52301145 52301262 -124672878 - L1MB7 LINE L1 -878 5306 5189 34 55 0 0 chrX 52301271 52301326 -124672814 + AT_rich Low_complexity Low_complexity 1 55 0 1992 115 47 0 chrX 52301326 52301648 -124672492 - L1MA2 LINE L1 -2 6302 5966 8986 29 0 0 chrX 52301656 52303496 -124670644 - L1PA3 LINE L1 -3 6152 4313 8390 36 0 0 chrX 52303496 52304534 -124669606 - L1PA3 LINE L1 -2559 3587 2550 2155 106 33 6 chrX 52304535 52304865 -124669275 - L1MA2 LINE L1 -323 5981 5643 265 289 0 0 chrX 52304862 52304952 -124669188 + L1MC4 LINE L1 6614 6703 -1339 * 350 241 18 0 chrX 52304983 52305095 -124669045 + (CATATA)n Simple_repeat Simple_repeat 3 116 0 3315 205 65 12 chrX 52305095 52306040 -124668100 - L1M1 LINE L1 -654 5648 5096 2388 85 0 7 chrX 52306040 52306347 -124667793 - AluSq SINE Alu -8 305 1 3315 205 65 12 chrX 52306347 52306778 -124667362 - L1M1 LINE L1 -1206 5096 4689 9030 134 30 42 chrX 52306779 52308395 -124665745 + Tigger1 DNA MER2_type 2 1599 -819 507 252 47 0 chrX 52308449 52308576 -124665564 + MIR SINE MIR 77 209 -53 2603 178 48 2 chrX 52308754 52309139 -124665001 + L1MA9 LINE L1 5396 5813 -499 279 0 0 0 chrX 52309139 52309170 -124664970 + (CA)n Simple_repeat Simple_repeat 2 32 0 2603 178 48 2 chrX 52309170 52309306 -124664834 + L1MA9 LINE L1 5813 5941 -371 25 31 0 0 chrX 52309676 52309708 -124664432 + AT_rich Low_complexity Low_complexity 1 32 0 34 24 0 0 chrX 52310185 52310226 -124663914 + AT_rich Low_complexity Low_complexity 1 41 0 290 263 0 0 chrX 52310465 52310541 -124663599 + MER116 DNA Mariner 1 76 -4 850 291 60 35 chrX 52310580 52311092 -124663048 - L1ME3A LINE L1 -227 6754 6230 4260 245 73 15 chrX 52311207 52312988 -124661152 - L1MEc LINE L1 -2466 4491 2624 2904 271 24 9 chrX 52313104 52313852 -124660288 - L1MEc LINE L1 -5754 1105 347 1222 196 75 29 chrX 52313854 52314134 -124660006 - L1MEc LINE L1 -6551 308 16 376 358 80 0 chrX 52314290 52314491 -124659649 + L2 LINE L2 2864 3080 -233 1235 76 0 35 chrX 52314491 52314662 -124659478 + AluY SINE Alu 147 311 0 421 321 27 11 chrX 52314675 52314859 -124659281 + L2 LINE L2 3097 3283 -30 33 35 0 17 chrX 52314859 52314893 -124659247 + AT_rich Low_complexity Low_complexity 1 35 -22 2099 134 102 3 chrX 52314893 52315265 -124658875 - L1PA16 LINE L1 -9 6157 5749 33 35 0 17 chrX 52315265 52315288 -124658852 + AT_rich Low_complexity Low_complexity 35 57 0 807 217 50 5 chrX 52315336 52315534 -124658606 + MER3 DNA MER1_type 2 208 -1 1500 181 25 20 chrX 52315864 52316218 -124657922 + L1MB8 LINE L1 5809 6164 -14 180 158 0 0 chrX 52316218 52316256 -124657884 + T-rich Low_complexity Low_complexity 1 38 0 273 269 88 16 chrX 52316296 52316387 -124657753 - MER5A DNA MER1_type -68 121 16 1002 130 45 29 chrX 52316979 52317280 -124656860 - THE1C LTR MaLR 0 375 1 320 0 25 0 chrX 52317703 52317743 -124656397 + (TG)n Simple_repeat Simple_repeat 2 42 0 715 319 17 4 chrX 52318264 52318496 -124655644 + MIR SINE MIR 28 262 0 520 231 19 13 chrX 52318547 52318703 -124655437 - MER20B DNA MER1_type 0 783 627 1005 245 71 49 chrX 52318749 52319117 -124655023 - MER68 LTR ERV1 -11 551 176 374 226 10 29 chrX 52319132 52319234 -124654906 - HAL1 LINE L1 -2115 392 293 2325 109 0 0 chrX 52319358 52319670 -124654470 - AluSx SINE Alu 0 312 1 488 383 20 37 chrX 52319773 52319856 -124654284 - L2 LINE L2 -1635 1679 1596 1851 154 23 3 chrX 52319856 52320155 -124653985 + AluJb SINE Alu 1 305 -7 488 383 20 37 chrX 52320155 52320391 -124653749 - L2 LINE L2 -1718 1596 1370 2581 122 28 21 chrX 52320391 52320816 -124653324 + MSTA LTR MaLR 1 428 0 488 383 20 37 chrX 52320816 52321031 -124653109 - L2 LINE L2 -1944 1370 1153 999 190 16 11 chrX 52321282 52321466 -124652674 + MER58A DNA MER1_type 40 224 0 3592 213 25 24 chrX 52322269 52323132 -124651008 - L1MB5 LINE L1 0 6174 5311 525 221 38 90 chrX 52323535 52323825 -124650315 + ORSL DNA AcHobo 1 275 0 448 264 178 0 chrX 52324901 52325064 -124649076 - MIR SINE MIR -1 261 70 204 67 0 0 chrX 52325765 52325795 -124648345 + (CA)n Simple_repeat Simple_repeat 2 31 0 721 295 55 16 chrX 52326258 52326512 -124647628 - MER102a DNA MER1_type -14 316 53 853 235 52 5 chrX 52326534 52326747 -124647393 - MER58A DNA MER1_type -1 223 1 478 228 35 26 chrX 52327729 52327843 -124646297 + L2 LINE L2 3199 3313 0 1544 161 0 67 chrX 52328294 52328593 -124645547 + AluJb SINE Alu 26 304 -8 2219 207 28 5 chrX 52328635 52329065 -124645075 - MER68 LTR ERV1 0 562 123 22 0 0 0 chrX 52329800 52329822 -124644318 + AT_rich Low_complexity Low_complexity 1 22 0 522 0 0 0 chrX 52330636 52330694 -124643446 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 216 143 0 0 chrX 52330834 52330876 -124643264 + (TC)n Simple_repeat Simple_repeat 2 43 0 637 200 31 12 chrX 52331129 52331289 -124642851 + MER104 DNA Tc2 5 167 -13 1042 249 126 47 chrX 52331473 52331988 -124642152 - LTR1B LTR ERV1 -237 589 34 227 229 44 0 chrX 52331997 52332068 -124642072 - LTR1B LTR ERV1 -686 102 28 227 378 20 20 chrX 52332131 52332229 -124641911 - L2 LINE L2 -6 3266 3169 1337 218 144 29 chrX 52333083 52333637 -124640503 - L1MC5 LINE L1 -74 7887 7270 902 298 20 12 chrX 52333706 52333961 -124640179 + MIR SINE MIR 5 261 -1 498 283 122 0 chrX 52335816 52335996 -124638144 - MIR SINE MIR -27 235 34 2685 48 0 0 chrX 52335996 52336307 -124637833 + AluY SINE Alu 1 311 0 296 187 0 67 chrX 52336436 52336511 -124637629 + MER3 DNA MER1_type 140 209 0 1593 265 60 91 chrX 52336570 52337265 -124636875 + L2 LINE L2 2227 2900 -414 2252 122 0 0 chrX 52338394 52338706 -124635434 - AluSx SINE Alu 0 312 1 243 88 0 0 chrX 52339825 52339859 -124634281 + (T)n Simple_repeat Simple_repeat 1 34 0 4879 14 0 0 chrX 52339889 52340446 -124633694 - L1PA2 LINE L1 -3 6152 5596 590 40 0 0 chrX 52340446 52340520 -124633620 + L1P LINE L1 3982 4055 -2091 546 299 108 40 chrX 52340516 52341083 -124633057 - L1M4 LINE L1 -3139 3007 2391 * 2066 104 11 0 chrX 52341083 52341408 -124632732 + AluSx SINE Alu 1 328 0 546 299 108 40 chrX 52341408 52341467 -124632673 - L1M4 LINE L1 -3755 2391 2337 343 298 223 0 chrX 52341997 52342235 -124631905 - L1ME4a LINE L1 -245 5876 5586 356 297 13 65 chrX 52343108 52343263 -124630877 + MER5A DNA MER1_type 21 167 -22 329 334 67 24 chrX 52343447 52344028 -124630112 - L1ME4a LINE L1 -1054 5092 4487 1841 146 3 20 chrX 52344250 52344545 -124629595 + AluJo SINE Alu 7 296 -16 305 268 56 88 chrX 52344556 52344674 -124629466 - L1ME4a LINE L1 -1898 4248 4128 354 271 88 41 chrX 52344674 52344844 -124629296 - MER5B DNA MER1_type 0 178 1 305 268 56 88 chrX 52344844 52344970 -124629170 - L1ME4a LINE L1 -2018 4128 4012 606 282 67 0 chrX 52344970 52345165 -124628975 - MER63A DNA MER1_type 0 210 3 305 268 56 88 chrX 52345165 52345203 -124628937 - L1ME4a LINE L1 -2134 4012 3974 346 173 27 0 chrX 52345472 52345547 -124628593 - L1MA4 LINE L1 -282 6018 5942 2358 92 0 0 chrX 52345854 52346148 -124627992 + AluSx SINE Alu 1 294 -18 12002 171 33 48 chrX 52346364 52346694 -124627446 - L1 LINE L1 -2161 5404 5071 186 71 0 0 chrX 52346694 52346722 -124627418 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 12002 171 33 48 chrX 52346722 52347655 -124626485 - L1 LINE L1 -2494 5071 4126 1712 161 39 7 chrX 52347655 52347934 -124626206 + AluJb SINE Alu 5 292 -20 12002 171 33 48 chrX 52347934 52351230 -124622910 - L1 LINE L1 -3439 4126 267 5155 176 13 9 chrX 52351232 52352273 -124621867 - L1 LINE L1 -781 5365 4320 2911 231 50 22 chrX 52352241 52353106 -124621034 - L1MCa LINE L1 -5197 894 34 * 198 286 45 38 chrX 52354253 52354386 -124619754 - MIR SINE MIR -15 247 114 1281 337 86 24 chrX 52355051 52356073 -124618067 - L2 LINE L2 -8 3264 2174 5820 57 17 1 chrX 52356086 52356840 -124617300 + MER4E LTR ERV1 1 766 0 652 333 32 29 chrX 52356841 52357186 -124616954 + L2 LINE L2 1768 2113 -1201 391 313 6 40 chrX 52357370 52357546 -124616594 - Charlie8 DNA MER1_type -2245 172 3 1310 174 7 89 chrX 52357827 52358120 -124616020 - AluJb SINE Alu -43 269 1 1110 174 99 0 chrX 52358178 52358379 -124615761 + MIR SINE MIR 2 222 -40 418 307 53 0 chrX 52358497 52358611 -124615529 + L2 LINE L2 3141 3260 -12 2433 35 0 0 chrX 52358621 52358909 -124615231 - L1PA3 LINE L1 0 6155 5868 294 232 21 42 chrX 52358913 52359008 -124615132 + MIR SINE MIR 91 183 -79 192 214 125 0 chrX 52359831 52359887 -124614253 - MIR3 SINE MIR -37 171 109 255 268 24 24 chrX 52360267 52360394 -124613746 + CT-rich Low_complexity Low_complexity 4 130 0 * 323 286 11 33 chrX 52360327 52360509 -124613631 + (TCTCTG)n Simple_repeat Simple_repeat 3 180 0 372 152 0 0 chrX 52360509 52360575 -124613565 + (TG)n Simple_repeat Simple_repeat 1 66 0 376 297 196 5 chrX 52360959 52361168 -124612972 + MIR SINE MIR 2 250 -12 287 236 0 118 chrX 52361368 52361478 -124612662 + MIR SINE MIR 22 118 -90 570 290 0 12 chrX 52361984 52362146 -124611994 + MIR3 SINE MIR 42 201 -7 2379 268 95 63 chrX 52362285 52363013 -124611127 + L1MC4 LINE L1 5329 6032 -2010 3277 143 12 20 chrX 52363013 52363613 -124610527 + L1MB7 LINE L1 5590 6184 0 2379 268 95 63 chrX 52363613 52364823 -124609317 + L1MC4 LINE L1 6032 7434 -608 1815 122 4 0 chrX 52364823 52365070 -124609070 + AluSq SINE Alu 1 248 -65 2379 268 95 63 chrX 52365070 52365700 -124608440 + L1MC4 LINE L1 7434 8042 0 225 279 33 16 chrX 52366333 52366455 -124607685 - L1ME4a LINE L1 -4 6117 5994 374 57 19 0 chrX 52366473 52366526 -124607614 + (TC)n Simple_repeat Simple_repeat 1 54 0 10685 88 12 0 chrX 52366787 52369049 -124605091 - L1PA7 LINE L1 -8 6146 3867 9452 105 1 2 chrX 52369053 52370467 -124603673 - L1P LINE L1 -1989 4157 2746 517 63 0 0 chrX 52370468 52370531 -124603609 + U6 snRNA snRNA 7 69 -38 261 308 39 18 chrX 52370562 52370820 -124603320 - L1MC5 LINE L1 -504 7491 7264 878 236 87 0 chrX 52371134 52371388 -124602752 + HsTC2 DNA Tc2 1 276 -1622 2421 53 0 0 chrX 52371554 52371876 -124602264 + AluY SINE Alu 2 323 0 929 205 68 36 chrX 52371960 52372267 -124601873 - L1MC5 LINE L1 -35 7926 7610 342 115 0 0 chrX 52372296 52372348 -124601792 + (TG)n Simple_repeat Simple_repeat 2 53 0 358 276 78 0 chrX 52372474 52372590 -124601550 - MIR3 SINE MIR -19 189 65 204 324 29 0 chrX 52372641 52372709 -124601431 - MIR3 SINE MIR -3 205 136 770 278 68 19 chrX 52372709 52372972 -124601168 + MER102a DNA MER1_type 1 276 -54 368 208 26 0 chrX 52373132 52373209 -124600931 + MER102a DNA MER1_type 251 329 -1 180 178 44 22 chrX 52374259 52374304 -124599836 - L2 LINE L2 -4 3309 3264 237 380 19 0 chrX 52374418 52374526 -124599614 - L2 LINE L2 -229 3043 2934 520 238 203 20 chrX 52374635 52374837 -124599303 - MIR SINE MIR 0 262 24 195 319 53 32 chrX 52374872 52374966 -124599174 - L2 LINE L2 -498 2816 2721 * 558 294 35 24 chrX 52374949 52375119 -124599021 + MIR3 SINE MIR 14 185 -23 386 294 38 62 chrX 52375886 52376046 -124598094 - L2 LINE L2 0 3272 3117 1557 168 117 58 chrX 52376075 52376575 -124597565 - MER39 LTR ERV1 0 707 1 381 361 52 12 chrX 52376872 52377121 -124597019 - L2 LINE L2 -785 2529 2271 999 223 62 0 chrX 52377121 52377332 -124596808 - MER58A DNA MER1_type 0 224 1 1209 284 48 51 chrX 52377366 52378004 -124596136 - L2 LINE L2 0 3313 2670 2351 214 57 33 chrX 52378004 52379216 -124594924 + L1MC/D LINE L1 4474 5699 -543 491 272 0 0 chrX 52379273 52379376 -124594764 - MIR SINE MIR -117 145 43 243 357 10 0 chrX 52379419 52379517 -124594623 - L2 LINE L2 -2521 793 695 230 253 66 55 chrX 52379559 52379650 -124594490 - L2 LINE L2 -492 2822 2731 210 221 88 15 chrX 52380267 52380335 -124593805 + MIR SINE MIR 161 233 -29 261 250 31 16 chrX 52380974 52381038 -124593102 - MIR3 SINE MIR -16 192 128 363 23 0 0 chrX 52382323 52382367 -124591773 + (CA)n Simple_repeat Simple_repeat 2 45 0 285 297 180 0 chrX 52383031 52383159 -124590981 - MIR SINE MIR -10 252 102 184 270 45 45 chrX 52383237 52383326 -124590814 - L3 LINE CR1 -1 1576 1488 498 302 66 33 chrX 52383709 52383921 -124590219 + MIR SINE MIR 37 255 -7 548 269 0 8 chrX 52384399 52384529 -124589611 + MIR3 SINE MIR 31 159 -49 276 310 23 11 chrX 52385618 52385705 -124588435 + MIR SINE MIR 11 98 -164 306 250 13 13 chrX 52386083 52386159 -124587981 + MIR SINE MIR 185 260 -2 2002 139 0 7 chrX 52386405 52386700 -124587440 - AluSx SINE Alu -17 295 3 1079 250 203 8 chrX 52387036 52387420 -124586720 - L2 LINE L2 -5 3308 2850 321 177 31 31 chrX 52388143 52388273 -124585867 + CT-rich Low_complexity Low_complexity 1 130 0 226 208 132 0 chrX 52388353 52388406 -124585734 - MIR SINE MIR -3 259 200 2875 118 23 10 chrX 52388630 52389111 -124585029 - L1MA3 LINE L1 -2 6303 5817 5564 137 26 0 chrX 52389119 52390045 -124584095 - L1MA2 LINE L1 0 7723 6774 4557 126 21 20 chrX 52390053 52390752 -124583388 - L1MA2 LINE L1 0 6304 5607 2324 107 0 0 chrX 52390752 52391052 -124583088 - AluSq SINE Alu -13 300 1 4557 126 21 20 chrX 52391052 52391530 -124582610 - L1MA2 LINE L1 -697 5607 4234 * 11758 204 26 10 chrX 52391529 52394404 -124579736 - L1MA2 LINE L1 -894 6671 3749 619 171 9 0 chrX 52394444 52394555 -124579585 - L1MA2 LINE L1 -2035 4111 4000 4653 138 43 2 chrX 52394569 52395529 -124578611 - L1MA2 LINE L1 -3821 3744 2744 23 54 0 0 chrX 52395530 52395567 -124578573 + AT_rich Low_complexity Low_complexity 1 37 0 1305 66 77 0 chrX 52395786 52395969 -124578171 - L1PA7 LINE L1 0 6154 5958 7473 184 11 4 chrX 52395969 52397310 -124576830 - L1MA2 LINE L1 -6034 1531 181 3730 73 2 51 chrX 52397558 52398109 -124576031 - L1PA8A LINE L1 -2 6129 5606 397 244 12 6 chrX 52398315 52398479 -124575661 - L1M4 LINE L1 -1595 4551 4387 844 193 0 0 chrX 52398514 52398659 -124575481 - FRAM SINE Alu -10 166 22 456 282 27 0 chrX 52398796 52398984 -124575156 - L1M4 LINE L1 -1955 4191 3999 448 298 68 31 chrX 52398979 52399332 -124574808 - L1M4 LINE L1 -2065 4081 3716 * 816 272 42 0 chrX 52399333 52399524 -124574616 + MIR SINE MIR 2 200 -62 232 67 0 0 chrX 52399524 52399554 -124574586 - MLT1E3 LTR MaLR 0 555 526 287 180 33 63 chrX 52399603 52399699 -124574441 - MLT1G3 LTR MaLR 0 590 501 420 233 108 94 chrX 52399732 52399936 -124574204 - MLT1G3 LTR MaLR -165 390 135 2004 139 0 0 chrX 52399936 52400260 -124573880 - AluSg SINE Alu 0 324 1 420 233 108 94 chrX 52400260 52400310 -124573830 - MLT1G3 LTR MaLR -420 135 87 * 499 253 66 36 chrX 52400307 52400707 -124573433 - MLT1E3 LTR MaLR -176 448 1 21 0 0 0 chrX 52400773 52400794 -124573346 + AT_rich Low_complexity Low_complexity 1 21 0 8797 186 139 1 chrX 52400834 52402945 -124571195 + L1PB1 LINE L1 10 2411 -4452 11168 191 1 14 chrX 52402945 52404582 -124569558 + L1PB1 LINE L1 3409 4986 -1881 2173 134 7 0 chrX 52404582 52404889 -124569251 - AluSx SINE Alu -3 309 1 11168 191 1 14 chrX 52404889 52406407 -124567733 + L1PB1 LINE L1 4986 6522 -345 2117 124 3 49 chrX 52406426 52406752 -124567388 + L1PB1 LINE L1 6498 6805 -62 2234 119 0 0 chrX 52406752 52407054 -124567086 + AluSg SINE Alu 9 310 0 2117 124 3 49 chrX 52407054 52407113 -124567027 + L1PB1 LINE L1 6805 6865 -2 474 276 99 32 chrX 52407164 52407518 -124566622 + L1MC4a LINE L1 5482 5813 -308 476 287 38 86 chrX 52407781 52407936 -124566204 + MIR3 SINE MIR 6 150 -58 551 211 5 108 chrX 52407936 52408130 -124566010 + MER5B DNA MER1_type 4 177 -1 476 287 38 86 chrX 52408130 52408183 -124565957 + MIR3 SINE MIR 150 204 -4 294 82 0 20 chrX 52409294 52409343 -124564797 - L1MA5A LINE L1 -4 6293 6246 * 1318 299 18 13 chrX 52409342 52409794 -124564346 + L1PA12 LINE L1 1191 1644 -5937 868 137 0 0 chrX 52409848 52409972 -124564168 + AluSq/x SINE Alu 1 124 -188 558 0 0 0 chrX 52409972 52410034 -124564106 + (TA)n Simple_repeat Simple_repeat 2 63 0 2019 132 0 27 chrX 52410035 52410330 -124563810 + AluSx SINE Alu 1 287 -25 3522 204 16 14 chrX 52410350 52411215 -124562925 + L1PA12 LINE L1 2433 3306 -4278 2258 137 45 33 chrX 52411215 52411637 -124562503 - MSTA LTR MaLR 0 428 2 3522 204 16 14 chrX 52411637 52412082 -124562058 + L1PA12 LINE L1 3306 3749 -3835 1697 156 44 17 chrX 52412753 52413048 -124561092 + AluSx SINE Alu 1 303 -9 1861 205 42 8 chrX 52413242 52413623 -124560517 + MSTD LTR MaLR 3 396 0 292 331 25 16 chrX 52413730 52413851 -124560289 - MER5A DNA MER1_type -24 165 44 224 246 53 0 chrX 52413918 52413975 -124560165 + MIR SINE MIR 105 164 -98 252 0 0 0 chrX 52414026 52414054 -124560086 + (ATG)n Simple_repeat Simple_repeat 3 30 0 1484 100 5 5 chrX 52414965 52415175 -124558965 + L1PA15 LINE L1 5950 6159 -6 383 147 0 0 chrX 52415187 52415255 -124558885 - L1MA6 LINE L1 -37 6263 6196 24 53 0 0 chrX 52415278 52415316 -124558824 + AT_rich Low_complexity Low_complexity 1 38 0 2027 165 129 5 chrX 52415464 52415845 -124558295 + MSTA LTR MaLR 1 428 0 2098 156 5 0 chrX 52415845 52416217 -124557923 + MSTA-int LTR MaLR 1 374 -1277 1555 205 30 0 chrX 52416555 52416852 -124557288 + AluJo SINE Alu 6 311 -1 2255 189 74 19 chrX 52416889 52417418 -124556722 + L1PA16 LINE L1 5584 6141 -25 7418 38 0 1 chrX 52417442 52418933 -124555207 - L1PA4 LINE L1 -3 6152 4662 607 282 115 13 chrX 52419570 52419804 -124554336 + MIR SINE MIR 5 262 0 332 305 35 77 chrX 52420561 52420846 -124553294 - L2 LINE L2 0 3313 3041 6285 144 21 11 chrX 52420873 52422463 -124551677 - L1MA2 LINE L1 0 6304 4696 10125 233 66 53 chrX 52422583 52423804 -124550336 + L1PA12 LINE L1 476 1679 -5905 899 129 0 0 chrX 52423804 52423928 -124550212 + AluSq/x SINE Alu 1 124 -188 450 0 0 0 chrX 52423928 52423978 -124550162 + (TA)n Simple_repeat Simple_repeat 2 51 0 2019 132 0 27 chrX 52423979 52424274 -124549866 + AluSx SINE Alu 1 287 -25 10125 233 66 53 chrX 52424274 52425159 -124548981 + L1PA12 LINE L1 1679 2551 -5033 2258 137 45 33 chrX 52425159 52425581 -124548559 - MSTA LTR MaLR 0 428 2 10125 233 66 53 chrX 52425581 52427744 -124546396 + L1PA12 LINE L1 2551 5471 -2113 1035 227 25 0 chrX 52427743 52428029 -124546111 - L1 LINE L1 -3140 4425 4133 * 932 151 5 16 chrX 52428025 52428210 -124545930 - L1 LINE L1 -4577 2988 2806 * 5118 167 29 15 chrX 52428229 52429683 -124544457 - L1 LINE L1 -3435 4130 2658 1212 155 5 0 chrX 52429689 52429889 -124544251 + MER4B LTR ERV1 397 597 -13 13939 124 20 14 chrX 52429997 52430744 -124543396 + Tigger1 DNA MER2_type 72 813 -1605 2972 0 0 0 chrX 52430744 52431061 -124543079 + AluYb8 SINE Alu 1 317 -1 13939 124 20 14 chrX 52431061 52432646 -124541494 + Tigger1 DNA MER2_type 813 2418 0 399 178 0 171 chrX 52432646 52432792 -124541348 - MIR SINE MIR -62 200 80 251 317 0 48 chrX 52433155 52433259 -124540881 - L2 LINE L2 -177 3095 2997 746 291 64 37 chrX 52433318 52433721 -124540419 - MLT1J LTR MaLR -54 457 1 1199 322 200 28 chrX 52433852 52435080 -124539060 - L2 LINE L2 -428 2886 1420 1938 146 7 0 chrX 52435080 52435412 -124538728 - AluSx SINE Alu 0 334 1 1199 322 200 28 chrX 52435412 52435481 -124538659 - L2 LINE L2 -1894 1420 1364 846 210 45 10 chrX 52435791 52435991 -124538149 - MER20 DNA MER1_type -5 214 8 451 282 0 6 chrX 52436108 52436244 -124537896 - MIR SINE MIR -62 146 19 356 324 92 21 chrX 52436540 52437056 -124537084 - L1MC4a LINE L1 -529 5592 5349 1430 220 65 12 chrX 52437130 52437543 -124536597 - L1ME1 LINE L1 -190 5976 5542 497 258 31 0 chrX 52437533 52437696 -124536444 - L1ME1 LINE L1 -2537 3609 3442 * 2915 208 59 37 chrX 52437731 52438811 -124535329 - L1ME LINE L1 -608 5627 4516 956 253 44 47 chrX 52438814 52439134 -124535006 - L1ME LINE L1 -6033 363 45 213 102 20 41 chrX 52439151 52439200 -124534940 + (TAG)n Simple_repeat Simple_repeat 3 50 0 707 278 133 48 chrX 52439267 52439620 -124534520 - L2 LINE L2 -42 3271 2889 307 240 83 42 chrX 52439920 52440016 -124534124 + 7SK RNA RNA 17 116 -77 426 281 29 36 chrX 52440423 52440562 -124533578 - MIR SINE MIR -68 194 57 249 277 0 31 chrX 52441298 52441363 -124532777 - L2 LINE L2 -12 3260 3198 2268 266 98 30 chrX 52441443 52442269 -124531871 + L2 LINE L2 1834 2715 -599 680 307 162 26 chrX 52444041 52444584 -124529556 + L2 LINE L2 2702 3313 0 359 267 104 15 chrX 52444729 52444864 -124529276 + L2 LINE L2 3166 3312 -1 * 538 316 16 21 chrX 52444848 52445035 -124529105 + MIR3 SINE MIR 17 202 -6 318 301 77 6 chrX 52445014 52445038 -124529102 - MIR SINE MIR -47 215 194 * 3846 156 63 19 chrX 52445038 52445622 -124528518 - L1MB7 LINE L1 0 6184 5562 2347 99 0 3 chrX 52445622 52445926 -124528214 - AluSg SINE Alu -7 303 1 3846 156 63 19 chrX 52445926 52446059 -124528081 - L1MB7 LINE L1 -622 5562 5436 318 301 77 6 chrX 52446059 52446190 -124527950 - MIR SINE MIR -68 194 49 209 316 98 84 chrX 52446699 52446974 -124527166 + L2 LINE L2 2804 3082 -190 774 258 59 14 chrX 52447278 52447499 -124526641 + MIR SINE MIR 20 250 -12 216 214 0 0 chrX 52447512 52447568 -124526572 + (TTA)n Simple_repeat Simple_repeat 2 57 0 964 253 25 20 chrX 52448321 52448566 -124525574 - MIR SINE MIR 0 262 17 733 249 156 31 chrX 52448576 52448934 -124525206 - L1MC5 LINE L1 -48 7913 7511 1907 37 0 0 chrX 52448961 52449177 -124524963 - L1PA5 LINE L1 0 6154 5939 431 133 60 24 chrX 52450423 52450506 -124523634 + L2 LINE L2 3189 3274 -39 424 211 43 172 chrX 52450489 52450575 -124523565 - MIR SINE MIR -27 235 140 * 2385 103 0 0 chrX 52450575 52450877 -124523263 - AluSx SINE Alu -10 302 1 424 211 43 172 chrX 52450877 52451046 -124523094 - MIR SINE MIR -122 140 13 445 313 0 9 chrX 52451439 52451554 -124522586 - L2 LINE L2 -4 3309 3196 1486 203 86 19 chrX 52451557 52451872 -124522268 + MER58B DNA MER1_type 2 337 -4 274 265 59 29 chrX 52452358 52452460 -124521680 + MIR SINE MIR 84 188 -74 438 357 27 11 chrX 52453654 52453839 -124520301 - MIR SINE MIR -72 190 3 820 219 128 18 chrX 52455015 52455234 -124518906 + MIR SINE MIR 12 254 -8 298 306 104 12 chrX 52455261 52455434 -124518706 + MIR SINE MIR 74 262 0 285 51 0 0 chrX 52455817 52455856 -124518284 + (TG)n Simple_repeat Simple_repeat 2 40 0 544 129 1 61 chrX 52456026 52456140 -124518000 + L1PA6 LINE L1 6049 6153 -1 337 303 0 20 chrX 52456229 52456328 -124517812 - MIR3 SINE MIR -101 107 11 692 269 23 11 chrX 52456781 52456956 -124517184 + MER5B DNA MER1_type 2 178 0 493 271 18 48 chrX 52457006 52457172 -124516968 + MIR SINE MIR 97 257 -5 32 0 0 0 chrX 52457207 52457239 -124516901 + AT_rich Low_complexity Low_complexity 1 32 0 441 316 26 42 chrX 52457282 52457472 -124516668 + MIR SINE MIR 34 220 -42 6547 57 0 2 chrX 52457998 52458792 -124515348 - L1PA5 LINE L1 0 6154 5363 369 328 16 0 chrX 52458809 52458934 -124515206 - MIR SINE MIR -63 145 19 202 0 91 0 chrX 52459522 52459555 -124514585 + T-rich Low_complexity Low_complexity 2 37 0 307 242 0 133 chrX 52459586 52459751 -124514389 - L1ME LINE L1 -477 5644 5502 494 287 81 19 chrX 52459918 52460127 -124514013 - MIR SINE MIR -1 261 40 22 35 0 0 chrX 52460143 52460172 -124513968 + AT_rich Low_complexity Low_complexity 1 29 0 265 309 0 43 chrX 52461662 52461813 -124512327 + CT-rich Low_complexity Low_complexity 1 144 -36 2344 104 0 0 chrX 52461813 52462112 -124512028 - AluSx SINE Alu -13 299 1 265 309 0 43 chrX 52462112 52462148 -124511992 + CT-rich Low_complexity Low_complexity 144 180 0 * 360 285 11 28 chrX 52462114 52462293 -124511847 + (TCTCTG)n Simple_repeat Simple_repeat 1 176 0 428 242 38 53 chrX 52462561 52462693 -124511447 + MER5B DNA MER1_type 1 130 -48 225 273 0 0 chrX 52463397 52463452 -124510688 - L2 LINE L2 -223 3049 2995 460 275 117 102 chrX 52464293 52464943 -124509197 - L2 LINE L2 -427 2887 2228 275 225 17 108 chrX 52465025 52465145 -124508995 - L2 LINE L2 -1079 2235 2127 361 203 14 14 chrX 52465990 52466064 -124508076 + MIR3 SINE MIR 81 154 -54 312 285 23 31 chrX 52466247 52466377 -124507763 - MIR SINE MIR -50 212 84 272 263 25 25 chrX 52468105 52468185 -124505955 - MIR3 SINE MIR -28 180 101 473 324 37 0 chrX 52469723 52469859 -124504281 - MIR3 SINE MIR -63 145 5 7630 2 0 0 chrX 52470734 52471564 -124502576 - L1HS LINE L1 0 6155 5326 377 205 62 54 chrX 52471973 52472085 -124502055 - MIR SINE MIR -80 182 70 530 233 164 25 chrX 52472216 52472375 -124501765 + MER5A DNA MER1_type 9 189 0 349 342 105 7 chrX 52472671 52472823 -124501317 + MIR3 SINE MIR 40 206 -2 195 179 77 0 chrX 52473226 52473265 -124500875 + MER5A DNA MER1_type 148 189 0 * 207 320 40 10 chrX 52473265 52473352 -124500788 - MIR3 SINE MIR -52 156 67 315 236 153 0 chrX 52473561 52473676 -124500464 - MIR SINE MIR -85 123 16 216 261 11 80 chrX 52473816 52473904 -124500236 - MIR SINE MIR -70 192 111 1063 206 64 75 chrX 52473908 52474423 -124499717 - MLT1E3 LTR MaLR 0 624 1 509 321 36 26 chrX 52474816 52475009 -124499131 - MIR SINE MIR -22 240 46 3331 126 59 4 chrX 52475428 52475984 -124498156 - L1MA4A LINE L1 -10 6293 5707 399 79 0 69 chrX 52476008 52476109 -124498031 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 793 182 69 24 chrX 52476175 52476466 -124497674 + L1P LINE L1 1958 2261 -3885 10959 199 33 59 chrX 52476643 52476663 -124497477 - L1 LINE L1 -1772 5076 5057 1743 139 29 7 chrX 52476663 52476937 -124497203 - AluJb SINE Alu -32 280 1 10959 199 33 59 chrX 52476937 52480466 -124493674 - L1 LINE L1 -1791 5057 1710 2755 135 52 7 chrX 52480466 52480874 -124493266 - MSTB LTR MaLR 0 426 1 10959 199 33 59 chrX 52480874 52482536 -124491604 - L1 LINE L1 -5138 1710 6 219 69 0 0 chrX 52483460 52483489 -124490651 + (TAG)n Simple_repeat Simple_repeat 2 30 0 1832 179 94 35 chrX 52484342 52484381 -124489759 + MSTD LTR MaLR 1 36 -360 2015 150 0 6 chrX 52484381 52484695 -124489445 + AluSx SINE Alu 1 312 0 1832 179 94 35 chrX 52484695 52485029 -124489111 + MSTD LTR MaLR 36 396 0 274 279 51 13 chrX 52485195 52485274 -124488866 + MIR SINE MIR 58 139 -123 539 241 85 0 chrX 52485317 52485458 -124488682 - MER91B DNA MER1_type 0 190 38 465 328 32 13 chrX 52485772 52485962 -124488178 - MIR SINE MIR -66 142 1 261 0 0 0 chrX 52485978 52486007 -124488133 + (CA)n Simple_repeat Simple_repeat 2 30 0 14383 125 19 1 chrX 52486022 52488389 -124485751 - Tigger1 DNA MER2_type -6 2412 6 230 202 0 60 chrX 52488407 52488491 -124485649 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 288 70 0 0 chrX 52488515 52488558 -124485582 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1450 173 49 28 chrX 52488560 52488972 -124485168 - MLT2B1 LTR ERVL -50 470 1 965 189 149 0 chrX 52489831 52490053 -124484087 - MIR SINE MIR -5 257 3 457 298 25 25 chrX 52490059 52490220 -124483920 + MIR SINE MIR 6 166 -96 2421 56 0 10 chrX 52490262 52490567 -124483573 + AluY SINE Alu 1 302 -9 182 259 37 19 chrX 52490995 52491049 -124483091 - L3 LINE CR1 -12 1565 1511 507 332 134 5 chrX 52491053 52491276 -124482864 + MIR SINE MIR 9 260 -2 1225 247 62 15 chrX 52491544 52491949 -124482191 - LTR33 LTR ERVL -73 448 25 303 303 10 20 chrX 52493070 52493169 -124480971 + MIR SINE MIR 49 146 -62 243 331 0 89 chrX 52493302 52493459 -124480681 - L2 LINE L2 -384 2930 2788 1428 193 37 5 chrX 52493505 52493879 -124480261 - Charlie1 DNA MER1_type -9 2752 2367 7888 115 5 0 chrX 52493879 52495122 -124479018 - L1M1 LINE L1 -3130 4435 3187 * 8726 166 30 102 chrX 52495121 52496476 -124477664 - L1M1 LINE L1 -5564 2001 661 1155 143 22 0 chrX 52496476 52496658 -124477482 - AluSg/x SINE Alu -1 311 126 8726 166 30 102 chrX 52496658 52497261 -124476879 - L1M1 LINE L1 -6904 661 16 1848 294 63 44 chrX 52497274 52497426 -124476714 + L2 LINE L2 2087 2235 -1037 8920 45 4 0 chrX 52497426 52498493 -124475647 - MER11C LTR ERVK 0 1071 1 1848 294 63 44 chrX 52498493 52499319 -124474821 + L2 LINE L2 2235 3082 -190 3087 222 26 17 chrX 52499924 52500754 -124473386 - L1ME3A LINE L1 -8 6162 5325 21 95 0 0 chrX 52500993 52501056 -124473084 + AT_rich Low_complexity Low_complexity 1 63 0 377 129 0 0 chrX 52501143 52501213 -124472927 - L1MA4A LINE L1 -15 6288 6219 519 308 106 35 chrX 52501323 52501521 -124472619 + MIR SINE MIR 41 252 -10 19579 41 1 0 chrX 52501560 52504095 -124470045 - L1PA4 LINE L1 -2153 3993 1456 11689 31 1 0 chrX 52504105 52506280 -124467860 + L1PA4 LINE L1 3977 6152 -3 269 308 19 10 chrX 52506690 52506794 -124467346 - L2 LINE L2 -1046 2268 2164 211 167 0 0 chrX 52507033 52507075 -124467065 - L2 LINE L2 0 3313 3272 877 200 16 0 chrX 52507081 52507266 -124466874 - MER90 LTR ERV1 -55 559 372 665 289 18 9 chrX 52507269 52507497 -124466643 - MER90 LTR ERV1 -384 230 1 12941 99 12 54 chrX 52508232 52511019 -124463121 + L1PA7 LINE L1 3415 6143 -11 914 296 70 49 chrX 52511506 52512076 -124462064 - MER110-int LTR ERV1 -1688 2959 2378 2592 36 0 7 chrX 52512126 52512431 -124461709 - AluY SINE Alu -8 303 1 377 239 122 71 chrX 52512448 52512547 -124461593 - L1ME3A LINE L1 -5 6165 6072 2204 122 0 0 chrX 52512547 52512841 -124461299 - AluSx SINE Alu -18 294 1 377 239 122 71 chrX 52512841 52512938 -124461202 - L1ME3A LINE L1 -98 6072 5959 381 309 8 16 chrX 52513136 52513262 -124460878 + L2 LINE L2 3188 3312 -1 1247 187 84 67 chrX 52513601 52513960 -124460180 - MLT1A1 LTR MaLR 0 365 1 1475 189 83 87 chrX 52514163 52514600 -124459540 + MLT1D LTR MaLR 1 438 -67 2330 64 0 0 chrX 52514600 52514912 -124459228 - AluY SINE Alu 0 312 1 1475 189 83 87 chrX 52514912 52514980 -124459160 + MLT1D LTR MaLR 438 505 0 38770 67 4 7 chrX 52515902 52521579 -124452561 - L1P2 LINE L1 -494 5660 4 651 242 27 0 chrX 52521583 52521806 -124452334 - L1M4 LINE L1 -2996 3150 2922 689 207 0 7 chrX 52521821 52521956 -124452184 - AluJb SINE Alu -178 134 1 1660 249 24 28 chrX 52521971 52522626 -124451514 - L1M4 LINE L1 -3246 2900 2248 4175 117 39 38 chrX 52522632 52523368 -124450772 - L1PB3 LINE L1 -5 6149 5413 41558 43 2 0 chrX 52523392 52529536 -124444604 - L1PA2 LINE L1 -1 6154 3 3782 37 0 0 chrX 52529536 52530052 -124444088 - L1PB3 LINE L1 -727 5428 4913 424 172 306 0 chrX 52530151 52530331 -124443809 + Charlie5 DNA MER1_type 2390 2624 0 318 209 0 0 chrX 52530464 52530531 -124443609 + MIR SINE MIR 183 249 -13 662 69 10 0 chrX 52531196 52531297 -124442843 + (TCCTG)n Simple_repeat Simple_repeat 4 105 0 2052 104 4 11 chrX 52531297 52531577 -124442563 - AluSp SINE Alu -35 278 1 24 0 0 0 chrX 52531684 52531708 -124442432 + AT_rich Low_complexity Low_complexity 1 24 0 250 225 154 18 chrX 52531776 52531945 -124442195 - HAL1 LINE L1 -92 2415 2224 230 270 80 22 chrX 52532059 52532196 -124441944 - HAL1b LINE L1 -457 891 747 227 278 42 14 chrX 52532244 52532316 -124441824 - MIR SINE MIR -187 75 2 372 324 54 14 chrX 52533462 52533610 -124440530 - MIR SINE MIR -106 156 3 1289 213 46 46 chrX 52533661 52534078 -124440062 + L1ME3A LINE L1 5744 6160 -10 1080 241 24 8 chrX 52534282 52534535 -124439605 + MIR SINE MIR 6 262 0 1581 201 25 3 chrX 52534620 52534904 -124439236 - AluJo SINE Alu -22 290 1 454 288 49 56 chrX 52534904 52535165 -124438975 - L1ME LINE L1 -406 5764 5506 1878 49 0 0 chrX 52535430 52535674 -124438466 + L1PA4 LINE L1 5770 6013 -142 2170 100 0 0 chrX 52736988 52737278 -124236862 - AluSx SINE Alu -22 290 1 836 151 0 0 chrX 52737375 52737501 -124236639 - FRAM SINE Alu -18 158 33 44090 46 3 2 chrX 52737692 52743843 -124230297 - L1PA4 LINE L1 0 6155 1 596 256 98 18 chrX 52743844 52744088 -124230052 + L1MC4a LINE L1 5437 5699 -471 280 239 33 11 chrX 52744097 52744189 -124229951 + L1MC4a LINE L1 5813 5906 -1902 1867 145 52 44 chrX 52744333 52744677 -124229463 + MER7A DNA MER2_type 2 346 0 382 186 52 17 chrX 52744826 52745039 -124229101 + (TA)n Simple_repeat Simple_repeat 1 220 0 2052 128 3 0 chrX 52745103 52745399 -124228741 + AluSx SINE Alu 5 301 -11 225 108 0 0 chrX 52745740 52745777 -124228363 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 902 191 0 0 chrX 52745778 52745935 -124228205 - FRAM SINE Alu -23 153 1 342 0 0 0 chrX 52745937 52745975 -124228165 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 780 100 67 0 chrX 52746040 52746160 -124227980 - L1MDa LINE L1 -4526 2014 1887 1434 145 11 52 chrX 52746160 52746429 -124227711 - AluJo SINE Alu -54 258 1 3736 190 120 137 chrX 52746430 52746732 -124227408 - L1MDa LINE L1 -4749 1791 1485 1923 159 0 0 chrX 52746732 52747027 -124227113 - AluJb SINE Alu -17 295 1 3736 190 120 137 chrX 52747027 52747401 -124226739 - L1MDa LINE L1 -5055 1485 1106 693 126 0 110 chrX 52747401 52747428 -124226712 - FLAM_A SINE Alu -181 130 102 2256 78 7 0 chrX 52747428 52747724 -124226416 + AluSg SINE Alu 1 298 -12 693 126 0 110 chrX 52747724 52747823 -124226317 - FLAM_A SINE Alu -209 102 18 3736 190 120 137 chrX 52747823 52748842 -124225298 - L1MDa LINE L1 -5434 1106 1 1612 164 27 8 chrX 52748934 52749190 -124224950 + Tigger7 DNA MER2_type 1 261 -472 719 124 0 0 chrX 52749196 52749293 -124224847 + Tigger7 DNA MER2_type 2391 2487 0 2478 241 65 12 chrX 52749327 52750063 -124224077 - L2 LINE L2 -231 3082 2303 192 352 44 101 chrX 52750058 52750285 -124223855 - L2 LINE L2 -82 3190 2977 * 418 266 227 0 chrX 52750348 52750502 -124223638 + MIR SINE MIR 70 258 -4 206 200 0 0 chrX 52750743 52750778 -124223362 + polypyrimidine Low_complexity Low_complexity 2 36 0 1538 284 117 45 chrX 52755346 52755718 -124218422 - L3 LINE CR1 -107 1470 1126 1232 138 195 4 chrX 52755718 52755846 -124218294 - AluJb SINE Alu -19 293 191 189 0 0 0 chrX 52755846 52755867 -124218273 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 1232 138 195 4 chrX 52755867 52755984 -124218156 - AluJb SINE Alu -121 191 1 1538 284 117 45 chrX 52755984 52756417 -124217723 - L3 LINE CR1 -451 1126 607 1451 158 62 7 chrX 52756502 52756774 -124217366 + AluJo SINE Alu 5 291 -21 23 33 0 0 chrX 52756774 52756804 -124217336 + AT_rich Low_complexity Low_complexity 1 30 0 316 263 12 50 chrX 52756817 52756897 -124217243 - L3 LINE CR1 -1058 519 443 683 298 59 49 chrX 52756996 52757437 -124216703 + L2 LINE L2 2778 3313 0 454 327 155 33 chrX 52758251 52758740 -124215400 + L2 LINE L2 857 1405 -1909 1320 186 55 4 chrX 52758756 52758992 -124215148 - MIR SINE MIR -5 257 10 2203 137 14 8 chrX 52759100 52759458 -124214682 - MER47A DNA MER2_type 0 366 7 282 29 0 0 chrX 52759458 52759493 -124214647 + (TG)n Simple_repeat Simple_repeat 2 36 0 430 169 57 40 chrX 52759493 52759617 -124214523 + L1ME4a LINE L1 5988 6113 -8 249 33 0 0 chrX 52765136 52765166 -124208974 + (TG)n Simple_repeat Simple_repeat 2 31 0 1191 101 0 0 chrX 52765278 52765437 -124208703 + AluSx SINE Alu 1 159 -153 696 143 0 0 chrX 52765509 52765614 -124208526 + FRAM SINE Alu 27 131 -45 507 229 52 0 chrX 52766760 52766856 -124207284 + MIR SINE MIR 48 148 -114 2447 50 0 3 chrX 52768933 52769231 -124204909 - AluY SINE Alu -14 297 1 2214 110 0 0 chrX 52770361 52770669 -124203471 - AluSx SINE Alu -4 308 1 1162 42 0 7 chrX 52770670 52770813 -124203327 - AluSq/x SINE Alu -170 142 1 864 275 72 132 chrX 52770816 52771404 -124202736 + L3 LINE CR1 363 985 -592 1844 110 64 3 chrX 52771404 52771686 -124202454 + AluJb SINE Alu 7 305 -7 864 275 72 132 chrX 52771686 52771865 -124202275 + L3 LINE CR1 985 1084 -493 2380 81 3 0 chrX 52771865 52772174 -124201966 + AluSq SINE Alu 1 310 -3 864 275 72 132 chrX 52772174 52772193 -124201947 + L3 LINE CR1 1084 1103 -474 1674 157 24 7 chrX 52772408 52772702 -124201438 - AluJo SINE Alu -13 299 1 282 161 0 18 chrX 52772905 52772961 -124201179 - MIR SINE MIR -26 236 182 1137 324 64 27 chrX 52773148 52773706 -124200434 - L3 LINE CR1 -18 1559 894 397 267 27 40 chrX 52773809 52773959 -124200181 - L1ME4a LINE L1 -293 5828 5681 557 319 87 6 chrX 52773961 52774237 -124199903 + L2 LINE L2 2773 3069 -244 357 188 14 0 chrX 52774246 52774315 -124199825 - FLAM SINE Alu -9 124 55 4522 170 42 42 chrX 52774420 52775001 -124199139 + L1MB8 LINE L1 4382 4961 -1217 2096 99 3 7 chrX 52775001 52775293 -124198847 + AluSx SINE Alu 1 291 -21 4522 170 42 42 chrX 52775293 52775527 -124198613 + L1MB8 LINE L1 4961 5193 -985 895 138 0 0 chrX 52775527 52775657 -124198483 + FLAM_C SINE Alu 4 133 0 4522 170 42 42 chrX 52775657 52775757 -124198383 + L1MB8 LINE L1 5193 5291 -887 2220 86 3 7 chrX 52775757 52776058 -124198082 + AluSp SINE Alu 3 302 -11 4522 170 42 42 chrX 52776058 52776931 -124197209 + L1MB8 LINE L1 5291 6178 0 492 274 34 0 chrX 52776980 52777097 -124197043 + L2 LINE L2 3187 3307 -6 198 254 32 16 chrX 52777247 52777310 -124196830 - L2 LINE L2 -1004 2310 2247 1811 88 0 12 chrX 52777329 52777578 -124196562 + AluSg SINE Alu 37 282 -28 771 330 62 70 chrX 52777709 52778059 -124196081 - L3 LINE CR1 -1058 519 173 2351 65 0 3 chrX 52778059 52778353 -124195787 + AluY SINE Alu 1 293 -18 771 330 62 70 chrX 52778353 52778487 -124195653 - L3 LINE CR1 -1404 173 39 2135 86 3 33 chrX 52778980 52779283 -124194857 + AluSp SINE Alu 1 294 -19 486 216 52 155 chrX 52779426 52779658 -124194482 - MIR SINE MIR -6 256 49 1776 176 0 3 chrX 52779663 52779959 -124194181 + AluJb SINE Alu 1 295 -17 1961 131 7 0 chrX 52780246 52780543 -124193597 + AluSx SINE Alu 1 299 -13 38499 64 5 5 chrX 52780551 52786698 -124187442 + L1PA4 LINE L1 11 6152 -3 11360 134 15 1 chrX 52786706 52788333 -124185807 + L1MA3 LINE L1 116 1766 -5799 6918 115 24 18 chrX 52788318 52789820 -124184320 + L1MA3 LINE L1 6212 7724 0 * 483 104 123 57 chrX 52789848 52789954 -124184186 + L1MB8 LINE L1 6064 6176 -2 768 161 8 0 chrX 52791090 52791214 -124182926 + FLAM_A SINE Alu 10 134 -8 673 229 33 52 chrX 52793661 52793875 -124180265 - L1ME3 LINE L1 -8 6154 5939 517 265 49 60 chrX 52795263 52795463 -124178677 + MIR3 SINE MIR 8 208 0 250 211 0 42 chrX 52796594 52796665 -124177475 + G-rich Low_complexity Low_complexity 2 69 0 907 150 0 20 chrX 52797887 52798034 -124176106 + U4 snRNA snRNA 1 144 -1 481 239 103 42 chrX 52798053 52798106 -124176034 + MIR SINE MIR 6 54 -196 2102 82 0 4 chrX 52798106 52798409 -124175731 - AluSc SINE Alu 0 302 1 481 239 103 42 chrX 52798409 52798573 -124175567 + MIR SINE MIR 54 221 -29 205 246 16 0 chrX 52799440 52799501 -124174639 + (CGG)n Simple_repeat Simple_repeat 1 62 0 198 209 0 0 chrX 52802124 52802167 -124171973 + C-rich Low_complexity Low_complexity 3 45 0 190 242 154 33 chrX 52804190 52804281 -124169859 - MIR3 SINE MIR -16 192 91 383 220 76 25 chrX 52804612 52804730 -124169410 - L1MB8 LINE L1 -1 6177 6054 2439 54 0 0 chrX 52804730 52805026 -124169114 - AluY SINE Alu -15 296 1 1924 134 0 0 chrX 52805048 52805331 -124168809 - AluJb SINE Alu -29 283 1 757 139 107 0 chrX 52805331 52805453 -124168687 - AluJo SINE Alu -176 136 2 839 146 7 14 chrX 52805602 52805746 -124168394 - FLAM_C SINE Alu 0 143 1 253 269 115 39 chrX 52806748 52806826 -124167314 + L2 LINE L2 3154 3237 -35 592 263 27 43 chrX 52806869 52807055 -124167085 - MIR SINE MIR -75 187 5 2441 69 0 3 chrX 52807158 52807463 -124166677 + AluSc SINE Alu 1 304 -5 3864 142 66 21 chrX 52807763 52808508 -124165632 - L1MB8 LINE L1 -34 6144 5367 2133 84 39 0 chrX 52808730 52809015 -124165125 - AluSx SINE Alu -16 296 1 3262 140 25 51 chrX 52809046 52809395 -124164745 - L1MB8 LINE L1 -15 6163 5836 2210 107 0 25 chrX 52809395 52809713 -124164427 - AluSx SINE Alu -2 310 1 3262 140 25 51 chrX 52809713 52809993 -124164147 - L1MB8 LINE L1 -342 5836 5550 1989 116 3 0 chrX 52810285 52810602 -124163538 - AluSq SINE Alu 0 318 1 378 281 108 22 chrX 52810832 52810971 -124163169 + MIR3 SINE MIR 36 186 -22 1037 191 135 82 chrX 52811031 52811313 -124162827 - AluJo SINE Alu -4 298 2 656 10 0 41 chrX 52811346 52811443 -124162697 + (TTTCC)n Simple_repeat Simple_repeat 3 95 0 1656 158 7 4 chrX 52811444 52811717 -124162423 - AluJb SINE Alu -38 274 1 1717 132 0 0 chrX 52811829 52812079 -124162061 + AluSx SINE Alu 1 250 -62 922 331 34 37 chrX 52812226 52812634 -124161506 + L3 LINE CR1 236 642 -935 1525 258 90 42 chrX 52812663 52813403 -124160737 - L1ME4a LINE L1 0 6121 5418 432 0 0 0 chrX 52813403 52813451 -124160689 + (TG)n Simple_repeat Simple_repeat 1 48 0 1525 258 90 42 chrX 52813451 52813593 -124160547 - L1ME4a LINE L1 -703 5418 5284 2129 106 3 3 chrX 52813593 52813894 -124160246 - AluSx SINE Alu -11 301 1 1525 258 90 42 chrX 52813894 52814056 -124160084 - L1ME4a LINE L1 -837 5284 5131 1731 168 0 16 chrX 52814056 52814372 -124159768 - AluJo SINE Alu -1 311 1 1525 258 90 42 chrX 52814372 52814532 -124159608 - L1ME4a LINE L1 -990 5131 4855 2182 98 0 13 chrX 52815210 52815526 -124158614 - AluSx SINE Alu 0 312 1 23 0 0 0 chrX 52815978 52816001 -124158139 + AT_rich Low_complexity Low_complexity 1 23 0 274 189 0 19 chrX 52816046 52816099 -124158041 - MIR3 SINE MIR -3 205 154 1708 174 0 7 chrX 52816179 52816467 -124157673 - AluJo SINE Alu -26 286 1 2061 109 0 16 chrX 52816593 52816897 -124157243 - AluSx SINE Alu -8 304 6 348 280 143 93 chrX 52817144 52817389 -124156751 - L3 LINE CR1 -591 986 720 2110 108 0 7 chrX 52817389 52817684 -124156456 - AluSx SINE Alu -18 294 2 348 280 143 93 chrX 52817684 52817759 -124156381 - L3 LINE CR1 -857 720 650 276 222 86 0 chrX 52818397 52818478 -124155662 + L3 LINE CR1 1134 1221 -356 2028 60 0 0 chrX 52818483 52818734 -124155406 - AluY SINE Alu -15 296 46 220 350 50 65 chrX 52818933 52819316 -124154824 + L2 LINE L2 2527 2903 -411 2172 107 0 10 chrX 52819421 52819731 -124154409 + AluSx SINE Alu 1 307 -5 231 344 0 44 chrX 52819732 52819822 -124154318 + L3 LINE CR1 1429 1514 -63 490 273 168 74 chrX 52819896 52820027 -124154113 + L2 LINE L2 2661 2778 -535 2411 76 0 0 chrX 52820027 52820329 -124153811 + AluSq SINE Alu 3 304 -9 490 273 168 74 chrX 52820329 52820729 -124153411 + L2 LINE L2 2778 3286 -27 811 189 0 7 chrX 52820735 52820888 -124153252 - FRAM SINE Alu -3 173 22 2094 102 17 0 chrX 52821007 52821300 -124152840 - AluSx SINE Alu -14 298 1 588 242 98 41 chrX 52821305 52821549 -124152591 + L2 LINE L2 3056 3313 0 674 225 16 53 chrX 52821568 52821710 -124152430 - L1ME LINE L1 -460 5661 5526 1959 133 0 10 chrX 52821710 52822011 -124152129 - AluJb SINE Alu -14 298 1 674 225 16 53 chrX 52822011 52822055 -124152085 - L1ME LINE L1 -595 5526 5482 481 342 11 64 chrX 52822079 52822266 -124151874 - L3 LINE CR1 -940 637 461 556 284 149 23 chrX 52822267 52822482 -124151658 + L3 LINE CR1 1255 1496 -81 216 0 0 0 chrX 52822650 52822674 -124151466 + (TG)n Simple_repeat Simple_repeat 2 25 0 904 143 0 0 chrX 52822747 52822880 -124151260 - FLAM_C SINE Alu 0 133 1 751 182 65 18 chrX 52822930 52823100 -124151040 + MER5B DNA MER1_type 1 178 0 345 289 93 51 chrX 52823229 52823336 -124150804 + MIR SINE MIR 16 117 -145 946 148 12 35 chrX 52823336 52823505 -124150635 - FRAM SINE Alu 0 166 2 345 289 93 51 chrX 52823505 52823603 -124150537 + MIR SINE MIR 117 224 -38 475 263 56 78 chrX 52823746 52823795 -124150345 - MIR3 SINE MIR -15 193 144 2092 123 46 12 chrX 52823795 52824119 -124150021 + MER1B DNA MER1_type 3 337 0 475 263 56 78 chrX 52824119 52824248 -124149892 - MIR3 SINE MIR -64 144 19 2104 98 23 0 chrX 52824827 52825132 -124149008 - AluSx SINE Alu 0 312 1 2255 85 3 7 chrX 52825491 52825798 -124148342 + AluSp SINE Alu 7 312 -1 406 267 62 51 chrX 52826436 52826566 -124147574 + MIR SINE MIR 28 162 -100 2217 91 3 3 chrX 52826566 52826864 -124147276 - AluSp SINE Alu -15 298 1 406 267 62 51 chrX 52826864 52826909 -124147231 + MIR SINE MIR 162 205 -57 1953 151 3 3 chrX 52827243 52827555 -124146585 + AluSx SINE Alu 1 312 0 227 204 0 0 chrX 52827624 52827673 -124146467 + (CAT)n Simple_repeat Simple_repeat 3 51 0 1248 167 98 8 chrX 52830124 52830369 -124143771 - AluSx SINE Alu -45 267 1 1941 144 3 7 chrX 52833263 52833568 -124140572 + AluSx SINE Alu 5 308 -4 1011 172 39 0 chrX 52833569 52833772 -124140368 + L1M4 LINE L1 3576 3786 -2360 2022 145 0 16 chrX 52833772 52834089 -124140051 + AluSx SINE Alu 7 312 0 428 241 0 0 chrX 52834094 52834181 -124139959 + MER63 DNA MER1_type 665 751 -310 304 163 13 40 chrX 52834570 52834645 -124139495 - MER4D LTR ERV1 -45 853 760 341 129 0 16 chrX 52834666 52834728 -124139412 + (TTTCC)n Simple_repeat Simple_repeat 4 64 0 257 135 0 0 chrX 52834741 52834778 -124139362 - AluY SINE Alu -10 298 262 2301 75 14 0 chrX 52834746 52835028 -124139112 - AluY SINE Alu -25 286 1 2318 97 0 10 chrX 52835029 52835329 -124138811 - AluSx SINE Alu -15 297 1 238 222 111 14 chrX 52835330 52835402 -124138738 - MIR SINE MIR -17 245 167 278 275 33 33 chrX 52835601 52835692 -124138448 + MIR SINE MIR 17 107 -155 618 99 0 11 chrX 52835744 52835835 -124138305 - HY4 scRNA scRNA 0 93 4 254 315 43 0 chrX 52835847 52835939 -124138201 + MIR SINE MIR 131 226 -36 27 87 0 0 chrX 52836737 52836806 -124137334 + AT_rich Low_complexity Low_complexity 1 69 0 2303 104 0 0 chrX 52836855 52837153 -124136987 - AluSx SINE Alu -14 298 1 682 243 53 0 chrX 52837211 52837400 -124136740 + L1ME1 LINE L1 2294 2492 -3654 * 5555 189 102 88 chrX 52837375 52837626 -124136514 + L1MEc LINE L1 2066 2312 -3903 1699 183 46 0 chrX 52837626 52837911 -124136229 + AluJo SINE Alu 1 298 -14 5555 189 102 88 chrX 52837911 52837951 -124136189 + L1MEc LINE L1 2312 2350 -3865 1969 161 0 0 chrX 52837951 52838231 -124135909 + AluJb SINE Alu 1 280 -32 744 71 0 0 chrX 52838232 52838331 -124135809 + (GAAA)n Simple_repeat Simple_repeat 2 100 0 5555 189 102 88 chrX 52838331 52839159 -124134981 + L1MEc LINE L1 2350 3165 -3050 680 60 0 0 chrX 52839159 52839242 -124134898 + AluY SINE Alu 203 285 -26 5555 189 102 88 chrX 52839242 52839256 -124134884 + L1MEc LINE L1 3165 3177 -3038 207 0 0 0 chrX 52839256 52839279 -124134861 + (TTA)n Simple_repeat Simple_repeat 3 25 0 5555 189 102 88 chrX 52839279 52839321 -124134819 + L1MEc LINE L1 3177 3217 -2998 320 77 0 0 chrX 52839321 52839373 -124134767 - L1MB4 LINE L1 0 6180 6129 5555 189 102 88 chrX 52839373 52839485 -124134655 + L1MEc LINE L1 3217 3326 -2889 714 197 0 0 chrX 52839485 52839602 -124134538 - FLAM_C SINE Alu -15 118 2 5555 189 102 88 chrX 52839602 52840133 -124134007 + L1MEc LINE L1 3326 3848 -2367 2135 153 11 29 chrX 52840133 52840512 -124133628 + L1PA15 LINE L1 5794 6165 0 5555 189 102 88 chrX 52840512 52840918 -124133222 + L1MEc LINE L1 3848 4422 -1793 2394 200 60 26 chrX 52840923 52841504 -124132636 + L1ME1 LINE L1 5566 6166 0 3798 193 133 39 chrX 52841513 52842545 -124131595 + L1ME1 LINE L1 3915 4849 -1386 2182 107 3 3 chrX 52842545 52842834 -124131306 - AluSx SINE Alu -23 289 1 3798 193 133 39 chrX 52842834 52842856 -124131284 + L1ME1 LINE L1 4849 4868 -1367 1865 163 0 20 chrX 52842856 52843151 -124130989 - AluJb SINE Alu -23 289 1 3798 193 133 39 chrX 52843151 52844032 -124130108 + L1ME1 LINE L1 4868 6051 -184 747 148 6 77 chrX 52844139 52844238 -124129902 + L1MA10 LINE L1 6177 6261 -73 2197 119 10 0 chrX 52844238 52844532 -124129608 - AluSq SINE Alu -16 297 1 747 148 6 77 chrX 52844532 52844601 -124129539 + L1MA10 LINE L1 6261 6333 -1 241 183 65 6 chrX 52845756 52845862 -124128278 - MIR3 SINE MIR -5 203 40 1258 126 22 22 chrX 52846029 52846252 -124127888 + L1PA16 LINE L1 5937 6159 -7 2015 193 12 166 chrX 52846593 52846759 -124127381 - L1 LINE L1 -2717 3429 3239 2431 78 0 31 chrX 52846759 52847080 -124127060 - AluY SINE Alu 0 311 1 2015 193 12 166 chrX 52847080 52847213 -124126927 - L1 LINE L1 -2907 3239 3087 2320 82 10 0 chrX 52847213 52847504 -124126636 - AluSp SINE Alu -19 294 1 2015 193 12 166 chrX 52847504 52847636 -124126504 - L1 LINE L1 -3059 3087 2936 650 143 0 0 chrX 52847636 52847734 -124126406 - FLAM_A SINE Alu -27 115 18 2015 193 12 166 chrX 52847734 52848008 -124126132 - L1 LINE L1 -3210 2936 2622 2132 114 10 3 chrX 52848008 52848297 -124125843 - AluSx SINE Alu -21 291 1 2015 193 12 166 chrX 52848297 52848579 -124125561 - L1 LINE L1 -3524 2622 2586 2014 159 3 0 chrX 52848579 52848880 -124125260 + AluJo SINE Alu 1 302 -10 2015 193 12 166 chrX 52848880 52849014 -124125126 - L1 LINE L1 -3560 2586 2433 193 315 65 54 chrX 52851975 52852067 -124122073 + MIR SINE MIR 36 128 -80 414 221 0 0 chrX 52852083 52852178 -124121962 + (TG)n Simple_repeat Simple_repeat 2 96 0 225 226 0 43 chrX 52852286 52852379 -124121761 + L1MC4 LINE L1 6615 6703 -1339 186 133 0 0 chrX 52852379 52852409 -124121731 + (TA)n Simple_repeat Simple_repeat 2 31 0 735 110 0 0 chrX 52852409 52852509 -124121631 - AluJ/FLAM SINE Alu -212 100 1 235 213 27 13 chrX 52852524 52852599 -124121541 + CT-rich Low_complexity Low_complexity 1 76 0 1878 154 10 7 chrX 52852629 52852922 -124121218 - AluJb SINE Alu -18 294 1 628 163 0 0 chrX 52852924 52853016 -124121124 + MER68 LTR ERV1 467 558 -4 294 219 27 14 chrX 52853018 52853091 -124121049 + MIR SINE MIR 123 196 -66 6194 62 19 57 chrX 52853212 52854280 -124119860 + SVA Other Other 1 868 -607 557 176 0 0 chrX 52854384 52854469 -124119671 - AluJ/FLAM SINE Alu -223 89 5 336 284 29 0 chrX 52855521 52855623 -124118517 + L1MC4a LINE L1 5573 5677 -444 934 110 7 27 chrX 52855628 52855774 -124118366 + FLAM_C SINE Alu 1 143 0 574 243 105 15 chrX 52855779 52855936 -124118204 + L1MC4a LINE L1 5686 5827 -294 1614 96 44 9 chrX 52855936 52856185 -124117955 - AluSx SINE Alu 0 301 45 574 243 105 15 chrX 52856185 52856336 -124117804 + L1MC4a LINE L1 5827 6026 -95 366 200 94 23 chrX 52856538 52856670 -124117470 - MER5A DNA MER1_type 0 189 38 250 325 26 32 chrX 52861934 52862088 -124112052 + L2 LINE L2 1607 1759 -1555 197 279 221 10 chrX 52862641 52862745 -124111395 + L2 LINE L2 2180 2305 -1009 573 232 5 28 chrX 52862822 52863022 -124111118 + L3 LINE CR1 1268 1504 -73 291 335 177 10 chrX 52863098 52863301 -124110839 - MIR SINE MIR -6 256 20 319 259 28 84 chrX 52863302 52863419 -124110721 - MER5A DNA MER1_type 0 189 80 2449 56 16 16 chrX 52863419 52863723 -124110417 - AluY SINE Alu -7 304 1 319 259 28 84 chrX 52863723 52863748 -124110392 - MER5A DNA MER1_type -109 80 55 1776 159 10 32 chrX 52863755 52864063 -124110077 + AluJo SINE Alu 1 301 -11 270 0 0 0 chrX 52864819 52864849 -124109291 + (TTTAA)n Simple_repeat Simple_repeat 2 31 0 205 327 0 0 chrX 52867352 52867407 -124106733 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chrX 52867848 52867871 -124106269 + AT_rich Low_complexity Low_complexity 1 23 0 221 341 30 15 chrX 52868165 52868300 -124105840 + L2 LINE L2 2919 3055 -217 2365 93 3 0 chrX 52868484 52868775 -124105365 - AluSp SINE Alu -21 292 1 2368 95 0 0 chrX 52868839 52869134 -124105006 - AluSc SINE Alu -14 295 1 210 228 35 0 chrX 52869398 52869455 -124104685 + L3 LINE CR1 1180 1238 -339 200 239 0 0 chrX 52869457 52869503 -124104637 - MIR3 SINE MIR -7 201 156 * 223 224 0 20 chrX 52869502 52869551 -124104589 + L3 LINE CR1 1497 1544 -33 2233 127 0 0 chrX 52870120 52870427 -124103713 - AluSx SINE Alu -5 307 1 2396 103 0 0 chrX 52870675 52870987 -124103153 - AluSx SINE Alu 0 312 1 2282 112 0 10 chrX 52871731 52872036 -124102104 - AluSx SINE Alu -10 302 1 468 268 49 55 chrX 52872285 52872449 -124101691 + MIR3 SINE MIR 39 201 -7 195 252 50 43 chrX 52880745 52880884 -124093256 + L2 LINE L2 3164 3303 -10 282 87 0 0 chrX 52880926 52880972 -124093168 + (TG)n Simple_repeat Simple_repeat 2 47 0 263 191 0 0 chrX 52881365 52881412 -124092728 + L2 LINE L2 3262 3308 -5 228 140 65 0 chrX 52882283 52882376 -124091764 + (TA)n Simple_repeat Simple_repeat 1 99 0 1858 133 3 18 chrX 52886306 52886592 -124087548 - AluJb SINE Alu -30 282 1 348 218 152 132 chrX 52886773 52886851 -124087289 - MIR SINE MIR -48 214 139 2237 114 13 0 chrX 52886851 52887159 -124086981 - AluSx SINE Alu 0 312 1 348 218 152 132 chrX 52887159 52887277 -124086863 - MIR SINE MIR -123 139 14 435 244 92 17 chrX 52887331 52887450 -124086690 + L2 LINE L2 3125 3252 -20 324 297 162 34 chrX 52888109 52888375 -124085765 - L2 LINE L2 -25 3288 2989 188 290 100 10 chrX 52888721 52888821 -124085319 + L2 LINE L2 3200 3308 -5 * 326 277 30 0 chrX 52888820 52888921 -124085219 + MIR3 SINE MIR 103 206 -2 734 286 53 0 chrX 52890044 52890271 -124083869 - MIR SINE MIR 0 262 24 1529 126 180 8 chrX 52890403 52890658 -124083482 - AluY SINE Alu -12 299 1 316 105 53 35 chrX 52890696 52890753 -124083387 - AluSc SINE Alu -151 148 100 336 286 0 0 chrX 52890842 52890912 -124083228 - L2 LINE L2 -50 3222 3153 2338 117 0 0 chrX 52891002 52891343 -124082797 + AluSg SINE Alu 1 341 0 359 316 128 15 chrX 52891360 52891761 -124082379 + L2 LINE L2 2614 3051 -221 1856 107 0 0 chrX 52891792 52892034 -124082106 - AluSx SINE Alu -56 256 15 255 125 0 0 chrX 52892225 52892265 -124081875 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 2340 89 3 0 chrX 52892601 52892893 -124081247 + AluSp SINE Alu 1 293 -20 260 161 32 43 chrX 52892895 52892988 -124081152 + (TATAA)n Simple_repeat Simple_repeat 5 96 0 180 0 0 0 chrX 52893016 52893036 -124081104 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 842 136 8 0 chrX 52893052 52893177 -124080963 - FAM SINE Alu -42 143 18 459 165 13 0 chrX 52893542 52893621 -124080519 + MER116 DNA Mariner 1 80 0 2443 71 0 3 chrX 52893844 52894138 -124080002 + AluSc SINE Alu 1 293 -16 2198 100 0 0 chrX 52894315 52894595 -124079545 + AluSq SINE Alu 1 280 -33 324 0 0 0 chrX 52894595 52894631 -124079509 + (CA)n Simple_repeat Simple_repeat 1 36 0 40365 74 6 7 chrX 52894652 52900805 -124073335 - L1PA5 LINE L1 0 6154 11 2086 131 7 0 chrX 52900813 52901110 -124073030 - AluSx SINE Alu -13 299 1 1896 176 0 3 chrX 52901397 52901693 -124072447 - AluJb SINE Alu -17 295 1 425 188 5 183 chrX 52901698 52901900 -124072240 + MIR SINE MIR 49 214 -48 2260 86 3 33 chrX 52902073 52902376 -124071764 - AluSp SINE Alu -19 294 1 629 328 77 64 chrX 52902869 52903003 -124071137 + L3 LINE CR1 39 170 -1407 2484 65 0 3 chrX 52903003 52903297 -124070843 - AluY SINE Alu -18 293 1 629 328 77 64 chrX 52903297 52903696 -124070444 + L3 LINE CR1 170 579 -998 473 238 19 69 chrX 52903702 52903862 -124070278 + L2 LINE L2 3161 3312 -1 463 238 26 20 chrX 52903892 52904043 -124070097 + L3 LINE CR1 610 761 -816 2437 81 10 0 chrX 52904088 52904398 -124069742 - AluSp SINE Alu 0 313 1 1872 173 0 23 chrX 52904425 52904731 -124069409 + AluJo SINE Alu 1 299 -13 573 289 50 82 chrX 52904798 52904837 -124069303 - L2 LINE L2 0 3272 3233 2017 145 0 3 chrX 52904837 52905134 -124069006 + AluJb SINE Alu 1 296 -16 573 289 50 82 chrX 52905134 52905412 -124068728 - L2 LINE L2 -39 3233 2965 6207 172 112 29 chrX 52905690 52905820 -124068320 + L1MC4 LINE L1 6460 6578 -1464 2432 103 0 0 chrX 52905820 52906131 -124068009 + AluSx SINE Alu 1 311 -1 6207 172 112 29 chrX 52906131 52907462 -124066678 + L1MC4 LINE L1 6578 8042 0 543 296 146 49 chrX 52907596 52907855 -124066285 + L3 LINE CR1 1153 1462 -115 2161 118 0 26 chrX 52907855 52908159 -124065981 - AluSx SINE Alu -16 296 1 543 296 146 49 chrX 52908159 52908284 -124065856 + L3 LINE CR1 1462 1574 -3 389 252 78 17 chrX 52910662 52910777 -124063363 + L2 LINE L2 3137 3258 -14 186 103 0 0 chrX 52910778 52910807 -124063333 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 251 316 138 48 chrX 52910813 52911044 -124063096 + L2 LINE L2 3020 3271 -1 1476 137 17 0 chrX 52911112 52911353 -124062787 + L1MB7 LINE L1 5921 6165 -19 574 243 7 7 chrX 52911618 52911754 -124062386 - MER103 DNA DNA 0 166 31 483 307 108 47 chrX 52911821 52911987 -124062153 - L2 LINE L2 -531 2783 2629 2443 63 7 23 chrX 52911987 52912290 -124061850 + AluSp SINE Alu 1 298 -15 2327 84 0 0 chrX 52912290 52912612 -124061528 + AluY SINE Alu 1 322 0 483 307 108 47 chrX 52912612 52912932 -124061208 - L2 LINE L2 -684 2630 2265 823 294 72 52 chrX 52913174 52913345 -124060795 - L2 LINE L2 -429 2885 2719 2584 66 0 0 chrX 52913345 52913650 -124060490 + AluSc SINE Alu 1 305 -4 823 294 72 52 chrX 52913650 52913961 -124060179 - L2 LINE L2 -595 2719 2393 2712 155 33 84 chrX 52914291 52914931 -124059209 - L1MB7 LINE L1 -12 6172 5566 389 99 56 0 chrX 52914926 52914997 -124059143 + L1MC3 LINE L1 6924 6998 -787 * 1835 179 0 3 chrX 52915000 52915290 -124058850 + AluJb SINE Alu 3 291 -21 822 165 0 0 chrX 52915307 52915440 -124058700 - FLAM_C SINE Alu 0 133 1 293 229 105 0 chrX 52915673 52915778 -124058362 - MIR SINE MIR 0 262 147 719 147 0 0 chrX 52915788 52915897 -124058243 - AluJo SINE Alu -178 134 26 567 228 20 27 chrX 52915897 52916046 -124058094 - MIR SINE MIR -110 152 5 621 271 103 18 chrX 52916162 52916491 -124057649 - L1M4 LINE L1 -1300 4846 4490 197 346 91 38 chrX 52916619 52916960 -124057180 - L2 LINE L2 -1809 1505 1147 429 182 8 25 chrX 52917017 52917138 -124057002 + GA-rich Low_complexity Low_complexity 2 120 0 849 134 0 24 chrX 52918041 52918168 -124055972 + FLAM_C SINE Alu 1 124 -19 259 333 70 31 chrX 52918237 52918366 -124055774 + MIR3 SINE MIR 60 193 -15 380 208 228 47 chrX 52918517 52918553 -124055587 - MER5A DNA MER1_type -6 183 155 180 0 0 0 chrX 52918553 52918573 -124055567 + (TA)n Simple_repeat Simple_repeat 2 21 0 2286 109 3 0 chrX 52918573 52918867 -124055273 - AluSx SINE Alu -17 295 1 380 208 228 47 chrX 52918867 52918978 -124055162 - MER5A DNA MER1_type -33 156 8 1399 203 59 7 chrX 52919169 52919475 -124054665 + L1MDa LINE L1 1 322 -6218 1371 198 54 22 chrX 52919471 52919785 -124054355 + L1MDa LINE L1 856 1179 -5361 * 1033 178 89 9 chrX 52919800 52920014 -124054126 - L1MB3 LINE L1 -7 6176 5946 25 0 0 0 chrX 52920015 52920040 -124054100 + AT_rich Low_complexity Low_complexity 1 25 0 482 151 0 0 chrX 52920337 52920410 -124053730 - L1MB3 LINE L1 -222 5961 5889 * 1905 136 22 125 chrX 52920408 52920466 -124053674 + L1MD1 LINE L1 5835 5897 -345 1573 123 123 11 chrX 52920466 52920726 -124053414 + AluJo SINE Alu 1 289 -23 1905 136 22 125 chrX 52920726 52921038 -124053102 + L1MD1 LINE L1 5897 6152 -90 1988 109 0 11 chrX 52921038 52921313 -124052827 + AluSx SINE Alu 33 304 -8 1905 136 22 125 chrX 52921313 52921396 -124052744 + L1MD1 LINE L1 6152 6242 0 2238 160 11 6 chrX 52921612 52921975 -124052165 + MLT1A1 LTR MaLR 1 365 0 375 288 28 80 chrX 52921975 52922187 -124051953 + MIR SINE MIR 35 235 -27 2619 58 0 3 chrX 52922433 52922745 -124051395 + AluY SINE Alu 1 311 0 31 0 0 0 chrX 52922745 52922776 -124051364 + AT_rich Low_complexity Low_complexity 1 31 0 6894 114 46 63 chrX 52923285 52923765 -124050375 - Tigger3b DNA MER2_type -1798 1230 743 1803 138 14 44 chrX 52923765 52924062 -124050078 + AluJb SINE Alu 1 288 -24 6894 114 46 63 chrX 52924062 52924113 -124050027 - Tigger3b DNA MER2_type -2285 743 693 2136 100 10 10 chrX 52924113 52924402 -124049738 + AluSx SINE Alu 23 311 -1 6894 114 46 63 chrX 52924402 52924456 -124049684 - Tigger3b DNA MER2_type -2335 693 640 2127 147 0 0 chrX 52924456 52924763 -124049377 + AluSx SINE Alu 1 307 -5 6894 114 46 63 chrX 52924763 52925426 -124048714 - Tigger3b DNA MER2_type -2388 640 2 238 223 19 87 chrX 52925607 52925710 -124048430 - MIR SINE MIR -59 203 108 3841 175 49 23 chrX 52925713 52926836 -124047304 + L1MB7 LINE L1 4929 6073 -111 11785 133 17 7 chrX 52926836 52926937 -124047203 + L1MA3 LINE L1 13 112 -7453 7821 26 1 0 chrX 52926937 52927962 -124046178 + L1PA4 LINE L1 5128 6152 -3 11785 133 17 7 chrX 52927962 52929597 -124044543 + L1MA3 LINE L1 112 1766 -5799 7093 114 24 16 chrX 52929582 52931081 -124043059 + L1MA3 LINE L1 6212 7724 0 * 491 104 123 57 chrX 52931110 52931216 -124042924 + L1MB8 LINE L1 6064 6176 -2 765 161 8 0 chrX 52932352 52932476 -124041664 + FLAM_A SINE Alu 10 134 -8 676 223 30 56 chrX 52934924 52935121 -124039019 - L1ME3 LINE L1 -8 6154 5963 4201 214 71 21 chrX 52935132 52936338 -124037802 - L1M4 LINE L1 -2414 3732 2466 4757 177 35 45 chrX 52936367 52936494 -124037646 + L1MB8 LINE L1 4187 4314 -1864 596 140 170 0 chrX 52936494 52936614 -124037526 - FLAM_C SINE Alu 0 137 1 4757 177 35 45 chrX 52936614 52936722 -124037418 + L1MB8 LINE L1 4314 4422 -1756 2054 150 0 3 chrX 52936722 52937029 -124037111 + AluSx SINE Alu 3 308 -4 4757 177 35 45 chrX 52937029 52937400 -124036740 + L1MB8 LINE L1 4422 4795 -1383 2184 126 7 0 chrX 52937400 52937710 -124036430 + AluSx SINE Alu 1 312 0 4757 177 35 45 chrX 52937710 52939125 -124035015 + L1MB8 LINE L1 4795 6178 0 2446 196 75 28 chrX 52939123 52939686 -124034454 - L1ME3 LINE L1 -240 5922 5295 * 2255 104 3 0 chrX 52939686 52939983 -124034157 - AluSp SINE Alu -15 298 1 2446 196 75 28 chrX 52939983 52940243 -124033897 - L1ME3 LINE L1 -867 5295 5049 1502 179 3 85 chrX 52940244 52940584 -124033556 - AluJo SINE Alu 0 312 1 1154 198 29 35 chrX 52940589 52940903 -124033237 - L1ME3 LINE L1 -1538 4608 4297 2313 101 7 0 chrX 52940922 52941219 -124032921 - AluSg SINE Alu -11 299 1 187 103 51 0 chrX 52941295 52941334 -124032806 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1760 220 118 34 chrX 52941949 52942569 -124031571 - L1MC3 LINE L1 -353 5813 5732 265 299 43 43 chrX 52942718 52942835 -124031305 - MIR SINE MIR -62 146 30 257 341 138 7 chrX 52942840 52942978 -124031162 + L3b LINE CR1 1120 1275 -308 1345 251 71 33 chrX 52943079 52943481 -124030659 - L1ME3 LINE L1 -2018 4128 3698 2366 101 0 0 chrX 52943481 52943789 -124030351 + AluSx SINE Alu 2 309 -3 1345 251 71 33 chrX 52943789 52943932 -124030208 - L1ME3 LINE L1 -2448 3698 3562 44277 39 1 1 chrX 52943940 52950092 -124024048 - L1PA3 LINE L1 -3 6152 2 236 125 0 0 chrX 52950252 52950284 -124023856 - U2 snRNA snRNA -156 32 1 2330 233 42 18 chrX 52950299 52950543 -124023597 - L1ME3 LINE L1 -2715 3431 3194 2196 106 0 0 chrX 52950543 52950852 -124023288 - AluSx SINE Alu 0 309 1 2330 233 42 18 chrX 52950852 52951345 -124022795 - L1ME3 LINE L1 -2952 3194 2675 7509 30 0 0 chrX 52951489 52952554 -124021586 + L1PA4 LINE L1 5092 6161 0 21 57 0 0 chrX 52953345 52953380 -124020760 + AT_rich Low_complexity Low_complexity 1 35 0 1102 275 119 11 chrX 52954139 52954796 -124019344 - L2 LINE L2 -5 3308 2566 1126 169 17 146 chrX 52954847 52955266 -124018874 + MLT1A1 LTR MaLR 1 365 0 233 261 15 0 chrX 52956137 52956202 -124017938 + (TA)n Simple_repeat Simple_repeat 2 67 0 360 222 28 14 chrX 52956217 52956289 -124017851 - L2 LINE L2 -50 3222 3150 500 181 20 5 chrX 52957156 52957269 -124016871 + LTR37A LTR ERV1 301 402 -24 2234 96 10 0 chrX 52957269 52957561 -124016579 - AluSx SINE Alu -17 295 1 344 270 24 103 chrX 52958029 52958281 -124015859 + MER31-int LTR ERV1 1055 1286 -3650 2257 79 0 4 chrX 52958295 52958575 -124015565 - AluSq SINE Alu -4 309 31 2526 50 0 28 chrX 52958740 52959060 -124015080 + AluY SINE Alu 1 311 0 4426 144 40 8 chrX 52959060 52960135 -124014005 + L1MA3 LINE L1 5175 6305 0 24 0 0 0 chrX 52960136 52960160 -124013980 + AT_rich Low_complexity Low_complexity 1 24 0 1613 176 0 14 chrX 52960524 52960803 -124013337 - AluJo SINE Alu -1 311 37 2312 103 0 3 chrX 52960828 52961129 -124013011 - AluSg SINE Alu -8 302 3 1056 197 93 23 chrX 52961452 52961860 -124012280 - Charlie1 DNA MER1_type 0 2761 46 344 232 36 9 chrX 52962039 52962151 -124011989 + MER31-int LTR ERV1 2471 2585 -2351 378 0 0 0 chrX 52962255 52962297 -124011843 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1973 94 0 0 chrX 52962299 52962543 -124011597 - AluSx SINE Alu -32 280 37 310 221 12 12 chrX 52962544 52962630 -124011510 + MER31-int LTR ERV1 2647 2732 -2204 3337 136 2 9 chrX 52962640 52963183 -124010957 - L1PB4 LINE L1 -1 6155 5617 1404 104 24 0 chrX 52963186 52963398 -124010742 + L1PB4 LINE L1 5408 5624 -532 7511 190 49 40 chrX 52963467 52963531 -124010609 + L1MB4 LINE L1 3343 3405 -2775 2754 13 0 13 chrX 52963531 52963840 -124010300 + AluYb8 SINE Alu 1 305 -13 7511 190 49 40 chrX 52963840 52965304 -124008836 + L1MB4 LINE L1 3405 4906 -1274 2242 109 7 0 chrX 52965304 52965607 -124008533 + AluSx SINE Alu 1 305 -7 7511 190 49 40 chrX 52965607 52966267 -124007873 + L1MB4 LINE L1 4906 5559 -621 10446 98 48 4 chrX 52966283 52967796 -124006344 + THE1C-int LTR MaLR 1 1580 0 2163 134 27 24 chrX 52967798 52968170 -124005970 + THE1C LTR MaLR 3 375 0 1912 132 81 35 chrX 52968171 52968321 -124005819 + L1MB4 LINE L1 5787 5929 -251 893 189 12 6 chrX 52968321 52968485 -124005655 + FRAM SINE Alu 1 165 -1 1912 132 81 35 chrX 52968485 52968704 -124005436 + L1MB4 LINE L1 5929 6173 -7 210 180 0 34 chrX 52968846 52968935 -124005205 + (TA)n Simple_repeat Simple_repeat 1 86 0 1872 150 7 0 chrX 52969053 52969347 -124004793 - AluSx SINE Alu -8 304 9 613 268 30 4 chrX 52969909 52970140 -124004000 + L1M4 LINE L1 3743 3979 -2167 2027 116 3 7 chrX 52970250 52970582 -124003558 - AluSp SINE Alu 0 331 1 21 57 0 0 chrX 52970706 52970741 -124003399 + AT_rich Low_complexity Low_complexity 1 35 0 1987 153 0 6 chrX 52970852 52971166 -124002974 + AluSx SINE Alu 1 312 0 6460 230 85 27 chrX 52971618 52972097 -124002043 + L1MB8 LINE L1 10 460 -6678 232 24 24 48 chrX 52972097 52972139 -124002001 + (CATCT)n Simple_repeat Simple_repeat 2 42 0 6460 230 85 27 chrX 52972139 52972590 -124001550 + L1MB8 LINE L1 460 884 -6254 471 35 0 0 chrX 52972590 52972647 -124001493 + (CA)n Simple_repeat Simple_repeat 2 58 0 6460 230 85 27 chrX 52972647 52974129 -124000011 + L1MB8 LINE L1 884 2702 -4436 4470 249 33 21 chrX 52974123 52974155 -123999985 + L1MEc LINE L1 1714 1744 -4471 * 2149 123 56 11 chrX 52974155 52974514 -123999626 + THE1C LTR MaLR 1 375 0 4470 249 33 21 chrX 52974514 52974619 -123999521 + L1MEc LINE L1 1744 1846 -4369 2284 100 0 10 chrX 52974619 52974918 -123999222 - AluSq SINE Alu -17 296 1 4470 249 33 21 chrX 52974918 52976650 -123997490 + L1MEc LINE L1 1846 3563 -2652 4336 175 42 46 chrX 52976624 52977465 -123996675 + L1MB8 LINE L1 4498 5341 -906 * 1811 136 4 0 chrX 52977465 52977722 -123996418 + AluSx SINE Alu 33 290 -22 4336 175 42 46 chrX 52977722 52978612 -123995528 + L1MB8 LINE L1 5341 6245 -2 368 209 0 0 chrX 52978625 52978692 -123995448 - MER58 DNA MER1_type -1 2419 2353 193 85 0 43 chrX 52978702 52978749 -123995391 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 231 209 0 45 chrX 52978763 52978830 -123995310 - MER58 DNA MER1_type -160 181 1 6808 25 1 0 chrX 52979053 52979852 -123994288 - L1PA3 LINE L1 0 6155 5356 14516 29 1 11 chrX 52979859 52981069 -123993071 + L1P LINE L1 2447 3667 -2479 5893 42 0 1 chrX 52981069 52981736 -123992404 - SVA Other Other 0 1386 721 14516 29 1 11 chrX 52981736 52983455 -123990685 + L1P LINE L1 3667 5362 -784 303 224 212 0 chrX 52983967 52984052 -123990088 + L2 LINE L2 3162 3264 -8 344 302 0 0 chrX 52985739 52985825 -123988315 + MIR3 SINE MIR 108 193 -15 1321 169 134 0 chrX 52986840 52986970 -123987170 + AluJo SINE Alu 1 112 -200 192 40 0 0 chrX 52986970 52986995 -123987145 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1321 169 134 0 chrX 52986995 52987125 -123987015 + AluJo SINE Alu 112 296 -16 1300 206 24 18 chrX 52987621 52987951 -123986189 - L1ME3A LINE L1 -8 6162 5831 2580 50 0 0 chrX 52987993 52988293 -123985847 + AluY SINE Alu 1 300 -11 277 346 103 6 chrX 52988426 52988582 -123985558 - MIR SINE MIR -58 204 34 585 158 0 30 chrX 52989655 52989788 -123984352 + GA-rich Low_complexity Low_complexity 4 132 0 186 233 0 96 chrX 52990575 52990648 -123983492 - MIR3 SINE MIR -29 179 114 8389 144 37 29 chrX 52990685 52991388 -123982752 + L1MCa LINE L1 7 703 -5723 1617 194 7 11 chrX 52991388 52991695 -123982445 + AluJb SINE Alu 1 306 0 8389 144 37 29 chrX 52991695 52992654 -123981486 + L1MCa LINE L1 703 1684 -4742 19376 135 38 20 chrX 52992656 52996065 -123978075 + L1M1 LINE L1 17 3485 -4080 4092 93 38 8 chrX 52996065 52996696 -123977444 + L1MA3 LINE L1 5653 6302 -3 909 114 18 18 chrX 52996709 52996876 -123977264 + L1MCa LINE L1 1752 1918 -4508 496 106 49 16 chrX 52996878 52997001 -123977139 + (TA)n Simple_repeat Simple_repeat 2 128 0 1235 158 18 0 chrX 52997001 52997229 -123976911 + L1PB4 LINE L1 5782 6013 -143 9262 179 31 50 chrX 52997229 52999322 -123974818 + MER21-int LTR ERV1 2083 4136 -55 2288 62 16 52 chrX 52999350 52999657 -123974483 - AluY SINE Alu -15 296 1 5167 134 68 16 chrX 52999817 53000769 -123973371 + L1MC1 LINE L1 5321 6322 -11 2412 97 0 0 chrX 53000774 53001084 -123973056 + AluSg SINE Alu 1 310 0 246 32 0 0 chrX 53001085 53001116 -123973024 + (TA)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chrX 53001116 53001157 -123972983 + AT_rich Low_complexity Low_complexity 1 41 0 422 307 6 62 chrX 53001576 53001755 -123972385 - MIR3 SINE MIR -6 202 34 316 342 67 17 chrX 53002050 53002170 -123971970 - L2 LINE L2 0 3272 3147 1123 223 7 13 chrX 53002213 53002523 -123971617 - L1MC5 LINE L1 -50 7911 7604 289 206 44 0 chrX 53003087 53003155 -123970985 - MIR SINE MIR -1 261 191 271 114 0 0 chrX 53003156 53003200 -123970940 + U5 snRNA snRNA 1 44 -72 1011 202 0 15 chrX 53003201 53003399 -123970741 - MIR SINE MIR -61 201 7 25 0 0 0 chrX 53003676 53003701 -123970439 + AT_rich Low_complexity Low_complexity 1 25 0 3563 230 46 143 chrX 53004645 53005294 -123968846 + L2 LINE L2 23 733 -2581 2053 94 91 0 chrX 53005294 53005580 -123968560 - AluSq SINE Alu 0 313 2 3563 230 46 143 chrX 53005580 53005741 -123968399 + L2 LINE L2 733 908 -2406 738 183 41 53 chrX 53005741 53005910 -123968230 - MER96 DNA MER1_type? 0 175 9 3563 230 46 143 chrX 53005910 53006423 -123967717 + L2 LINE L2 908 1370 -1944 2536 227 97 15 chrX 53006414 53007092 -123967048 - L2 LINE L2 -1175 2139 1406 * 2116 127 7 3 chrX 53007485 53007776 -123966364 + AluSx SINE Alu 6 297 -15 193 300 67 0 chrX 53008164 53008224 -123965916 + L2 LINE L2 3203 3266 -6 401 243 264 14 chrX 53008522 53008670 -123965470 - MIR SINE MIR -70 192 8 411 253 46 23 chrX 53009470 53009564 -123964576 + L1MC/D LINE L1 5630 5731 -2077 2531 65 0 0 chrX 53009564 53009872 -123964268 + AluY SINE Alu 1 308 -3 411 253 46 23 chrX 53009872 53009951 -123964189 + L1MC/D LINE L1 5731 5807 -2001 2540 224 62 20 chrX 53009998 53010992 -123963148 + L1MEc LINE L1 2016 3020 -3195 620 139 20 86 chrX 53011002 53011153 -123962987 + MLT1D LTR MaLR 363 503 -2 632 252 8 8 chrX 53011667 53011901 -123962239 + L1MEc LINE L1 3013 3246 -2969 1236 162 0 5 chrX 53011901 53012098 -123962042 + AluJb SINE Alu 43 238 -74 6272 207 56 56 chrX 53012117 53013174 -123960966 + L1MEc LINE L1 3223 4282 -1933 2062 129 0 35 chrX 53013174 53013491 -123960649 + AluSx SINE Alu 6 311 -1 6272 207 56 56 chrX 53013491 53014543 -123959597 + L1MEc LINE L1 4281 5332 -883 6670 180 52 72 chrX 53014547 53016451 -123957689 + L1MA8 LINE L1 2 1866 -5164 6566 75 16 16 chrX 53016451 53017472 -123956668 + L1PA11 LINE L1 5154 6174 0 1630 253 33 2 chrX 53017499 53018016 -123956124 + L1MA8 LINE L1 2318 2850 -4257 362 176 50 42 chrX 53018012 53018053 -123956087 + L1MA8 LINE L1 4150 4189 -2917 * 2128 137 13 3 chrX 53018053 53018359 -123955781 + AluSx SINE Alu 3 311 -1 362 176 50 42 chrX 53018359 53018436 -123955704 + L1MA8 LINE L1 4189 4269 -2837 40394 37 21 3 chrX 53018436 53024473 -123949667 + L1PA3 LINE L1 4 6155 0 1160 196 83 6 chrX 53024452 53024788 -123949352 + L1MA8 LINE L1 3248 3609 -2537 * 6352 155 49 14 chrX 53024786 53026962 -123947178 + L1MA8 LINE L1 4876 7139 -112 751 149 4 6 chrX 53026963 53027221 -123946919 + AluJ SINE Alu 1 304 -8 569 54 0 201 chrX 53027223 53027301 -123946839 + L1MA8 LINE L1 6170 6206 -85 5512 38 1 0 chrX 53027301 53027956 -123946184 + L1PA5 LINE L1 5497 6152 -2 569 54 0 201 chrX 53027956 53028026 -123946114 + L1MA8 LINE L1 6206 6288 -3 1094 214 82 65 chrX 53028046 53028241 -123945899 + L1ME1 LINE L1 5254 5444 -722 5067 90 6 3 chrX 53028241 53028940 -123945200 - L1PA10 LINE L1 -2 6166 5466 1094 214 82 65 chrX 53028940 53029145 -123944995 + L1ME1 LINE L1 5444 5661 -505 1225 120 0 0 chrX 53029156 53029314 -123944826 + AluSg/x SINE Alu 132 289 -23 1240 205 110 16 chrX 53029413 53029827 -123944313 + L1ME1 LINE L1 5722 6103 -63 27 29 0 0 chrX 53029899 53029933 -123944207 + AT_rich Low_complexity Low_complexity 1 34 0 225 263 40 40 chrX 53031265 53031341 -123942799 + L1ME LINE L1 146 221 -5984 562 278 57 20 chrX 53031780 53032028 -123942112 + L1ME LINE L1 679 935 -5270 403 252 75 13 chrX 53032229 53032388 -123941752 + L1ME LINE L1 998 1166 -5039 6281 169 25 2 chrX 53032482 53033900 -123940240 + L1MC2 LINE L1 4892 6344 0 941 279 64 34 chrX 53033901 53033962 -123940178 + L1ME LINE L1 2145 2203 -4012 2238 123 3 0 chrX 53033962 53034270 -123939870 + AluSx SINE Alu 1 309 -3 941 279 64 34 chrX 53034270 53034806 -123939334 + L1ME LINE L1 2203 2722 -3493 340 214 12 12 chrX 53034811 53034895 -123939245 + Tigger5 DNA MER2_type 2235 2318 -5 351 268 0 12 chrX 53034917 53034999 -123939141 - Tigger5 DNA MER2_type -2235 88 8 562 161 0 0 chrX 53035016 53035103 -123939037 + Tigger5 DNA MER2_type 2237 2323 0 297 295 0 0 chrX 53035118 53035213 -123938927 + L1ME LINE L1 2725 2819 -3396 769 217 6 13 chrX 53035219 53035376 -123938764 + MLT1C LTR MaLR 311 466 -1 294 279 175 8 chrX 53035396 53035636 -123938504 + L1ME LINE L1 4079 4358 -1857 1694 180 0 14 chrX 53035675 53035959 -123938181 + AluJb SINE Alu 1 280 -32 1123 160 9 38 chrX 53036544 53036756 -123937384 + MER3 DNA MER1_type 1 206 -3 192 40 0 0 chrX 53037000 53037025 -123937115 + (CAG)n Simple_repeat Simple_repeat 2 26 0 4204 24 0 10 chrX 53037126 53037626 -123936514 + L1PA3 LINE L1 5660 6154 -1 2004 100 4 11 chrX 53037670 53037978 -123936162 + AluSx SINE Alu 5 310 0 3299 177 51 12 chrX 53038217 53039381 -123934759 + L1M3 LINE L1 4633 5851 -398 5635 106 45 9 chrX 53039381 53040287 -123933853 - Tigger3b DNA MER2_type 0 1231 293 645 212 0 15 chrX 53040288 53040420 -123933720 + FLAM_A SINE Alu 1 130 -3 14063 68 6 1 chrX 53040423 53042229 -123931911 + L1P LINE L1 2 1817 -4329 1072 211 27 54 chrX 53042250 53042548 -123931592 + L1ME1 LINE L1 5872 6161 -5 1283 319 68 9 chrX 53042694 53043149 -123930991 - L3 LINE CR1 -26 1551 1070 535 146 0 0 chrX 53043153 53043235 -123930905 - Tigger5 DNA MER2_type 0 2323 2242 334 182 0 0 chrX 53043231 53043286 -123930854 + Tigger5 DNA MER2_type 2264 2318 -5 * 410 244 0 0 chrX 53043287 53043365 -123930775 - Tigger5 DNA MER2_type -2244 79 2 1054 198 119 11 chrX 53043368 53043646 -123930494 + MER2 DNA MER2_type 1 308 -37 873 360 45 8 chrX 53043648 53044045 -123930095 - L3 LINE CR1 -505 1072 661 24 53 0 0 chrX 53044105 53044143 -123929997 + AT_rich Low_complexity Low_complexity 1 38 0 189 170 85 43 chrX 53044202 53044249 -123929891 + L2 LINE L2 3261 3309 -4 22 0 0 0 chrX 53045101 53045123 -123929017 + AT_rich Low_complexity Low_complexity 1 22 0 298 287 65 37 chrX 53045556 53045664 -123928476 - L2 LINE L2 -19 3294 3184 1459 129 12 51 chrX 53045985 53046241 -123927899 + MSTB2 LTR MaLR 212 457 0 1253 227 117 72 chrX 53046241 53046525 -123927615 + L2 LINE L2 2821 3136 -177 1495 214 40 0 chrX 53046525 53046852 -123927288 + MER58B DNA MER1_type 1 340 -1 1253 227 117 72 chrX 53046852 53047038 -123927102 + L2 LINE L2 3136 3312 -1 2340 85 0 7 chrX 53047179 53047484 -123926656 + AluSg SINE Alu 1 303 -7 270 197 167 0 chrX 53048643 53048709 -123925431 + L2 LINE L2 3157 3233 -39 371 197 164 25 chrX 53051337 53051352 -123922788 - L1MA10 LINE L1 -1 6333 6319 2900 223 67 32 chrX 53051352 53051414 -123922726 - L1ME1 LINE L1 -4 6231 6173 282 116 0 0 chrX 53051414 53051457 -123922683 + (TA)n Simple_repeat Simple_repeat 2 44 0 2900 223 67 32 chrX 53051457 53052348 -123921792 - L1ME1 LINE L1 -62 6173 5244 1846 162 3 22 chrX 53052642 53052956 -123921184 - AluJo SINE Alu -4 308 1 1360 209 70 43 chrX 53053052 53053430 -123920710 - L1ME1 LINE L1 -1071 5144 4751 5174 77 3 0 chrX 53053430 53054118 -123920022 - L1PA14 LINE L1 -2 6159 5470 1360 209 70 43 chrX 53054118 53054183 -123919957 - L1ME1 LINE L1 -1464 4751 4689 * 2639 212 71 15 chrX 53054182 53054926 -123919214 - L1ME1 LINE L1 -3996 2400 1615 664 117 25 17 chrX 53054965 53055085 -123919055 - L1MB2 LINE L1 -98 6073 5953 183 91 45 23 chrX 53055085 53055129 -123919011 + CT-rich Low_complexity Low_complexity 1 45 0 2317 150 81 5 chrX 53055131 53055158 -123918982 - L1MB3 LINE L1 -181 6002 5978 2231 115 13 0 chrX 53055158 53055463 -123918677 - AluSx SINE Alu -3 309 1 2317 150 81 5 chrX 53055463 53055868 -123918272 - L1MB3 LINE L1 -205 5978 5537 3396 253 66 72 chrX 53055870 53057334 -123916806 - L1ME1 LINE L1 -4760 1636 183 2342 88 3 3 chrX 53057336 53057644 -123916496 - AluSc SINE Alu 0 309 2 2193 85 14 3 chrX 53057728 53058022 -123916118 - AluSc SINE Alu -12 297 1 369 233 6 116 chrX 53058031 53058203 -123915937 - L1ME1 LINE L1 -6206 190 38 9712 25 17 185 chrX 53058845 53060507 -123913633 + SVA Other Other 2 1384 -2 417 291 101 16 chrX 53061828 53062017 -123912123 - HAL1b LINE L1 -16 1332 1128 220 310 80 40 chrX 53062175 53062275 -123911865 - MIR3 SINE MIR -26 182 79 1934 182 5 90 chrX 53063167 53063259 -123910881 + L1M4 LINE L1 4520 4618 -1528 1628 179 32 0 chrX 53063259 53063539 -123910601 + AluJb SINE Alu 1 289 -23 1934 182 5 90 chrX 53063539 53064000 -123910140 + L1M4 LINE L1 4618 5026 -1120 4450 184 15 28 chrX 53064002 53064214 -123909926 + L1 LINE L1 4204 4417 -1729 2013 105 43 14 chrX 53064214 53064491 -123909649 + AluSx SINE Alu 1 285 -27 4450 184 15 28 chrX 53064491 53064992 -123909148 + L1 LINE L1 4417 4903 -1243 1900 167 0 7 chrX 53064992 53065285 -123908855 + AluSx SINE Alu 1 291 -21 4450 184 15 28 chrX 53065285 53065589 -123908551 + L1 LINE L1 4903 5209 -937 2080 97 32 2 chrX 53065580 53066025 -123908115 - L1PA8 LINE L1 -568 5563 5111 * 4638 69 7 0 chrX 53066025 53066623 -123907517 + L1PA8 LINE L1 5557 6170 -2 674 185 74 6 chrX 53066623 53066785 -123907355 - MER53 DNA DNA -16 173 1 877 235 68 38 chrX 53066952 53067067 -123907073 - L1MC5 LINE L1 -51 7910 7800 234 81 0 0 chrX 53067067 53067104 -123907036 + (CA)n Simple_repeat Simple_repeat 1 37 0 877 235 68 38 chrX 53067104 53067383 -123906757 - L1MC5 LINE L1 -161 7800 7504 598 197 20 9 chrX 53067383 53067514 -123906626 + MLT1C LTR MaLR 257 467 0 384 149 21 53 chrX 53067514 53067608 -123906532 + L1MDa LINE L1 1332 1422 -5118 988 199 0 0 chrX 53067615 53067781 -123906359 + FRAM SINE Alu 6 171 -5 189 0 0 0 chrX 53067798 53067819 -123906321 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 1208 190 74 40 chrX 53067825 53068177 -123905963 + L1MDa LINE L1 1412 1775 -4765 * 9203 172 58 57 chrX 53068175 53070321 -123903819 + L1MC3 LINE L1 5625 7775 -10 1423 194 27 47 chrX 53070321 53070620 -123903520 + AluJo SINE Alu 1 293 -9 9203 172 58 57 chrX 53070620 53070632 -123903508 + L1MC3 LINE L1 7775 7785 0 556 171 17 0 chrX 53070654 53070771 -123903369 + L1MDa LINE L1 2486 2604 -3936 5116 162 50 10 chrX 53070780 53071873 -123902267 + L1MA9 LINE L1 5176 6312 0 399 261 31 0 chrX 53071878 53072008 -123902132 + L1MDa LINE L1 2600 2733 -3807 * 3808 168 17 96 chrX 53072006 53072873 -123901267 - L1MA9 LINE L1 -1 6311 5530 2142 107 14 0 chrX 53072873 53073163 -123900977 + AluSq SINE Alu 1 294 -19 3808 168 17 96 chrX 53073163 53073285 -123900855 - L1MA9 LINE L1 -782 5530 5400 2908 127 35 35 chrX 53073286 53073836 -123900304 + L1MA9 LINE L1 5762 6311 -1 435 114 0 0 chrX 53073856 53073926 -123900214 + L1PA15 LINE L1 6091 6160 -5 2302 102 0 0 chrX 53073950 53074253 -123899887 - AluSc SINE Alu -6 303 1 235 71 48 0 chrX 53074279 53074321 -123899819 + A-rich Low_complexity Low_complexity 2 45 0 2909 224 57 30 chrX 53074322 53074582 -123899558 + L1ME1 LINE L1 5330 5581 -585 2297 144 98 2 chrX 53074582 53074999 -123899141 - MSTB2 LTR MaLR 0 457 1 2909 224 57 30 chrX 53074999 53075548 -123898592 + L1ME1 LINE L1 5581 6161 -5 405 180 23 192 chrX 53076225 53076336 -123897804 - MIR3 SINE MIR 0 208 134 2501 205 71 43 chrX 53076336 53076399 -123897741 - MLT1E2 LTR MaLR -2 624 564 1790 167 3 3 chrX 53076399 53076716 -123897424 + AluJo SINE Alu 3 319 0 2501 205 71 43 chrX 53076716 53077257 -123896883 - MLT1E2 LTR MaLR -62 564 2 405 180 23 192 chrX 53077257 53077317 -123896823 - MIR3 SINE MIR -74 134 66 583 290 161 0 chrX 53077631 53077855 -123896285 - MIR SINE MIR -1 261 2 32 17 7 0 chrX 53077864 53077948 -123896192 + AT_rich Low_complexity Low_complexity 1 39 0 1333 164 16 0 chrX 53077953 53078197 -123895943 - L1MA4 LINE L1 -6 6294 6047 501 230 214 9 chrX 53078799 53079029 -123895111 + MLT1H1 LTR MaLR 1 264 -291 630 101 0 0 chrX 53279034 53279113 -123695027 - AluS SINE Alu -233 80 2 1910 224 19 48 chrX 53279115 53279430 -123694710 - L1M4 LINE L1 -2561 3585 3263 2412 78 0 31 chrX 53279430 53279751 -123694389 - AluY SINE Alu 0 311 1 1910 224 19 48 chrX 53279751 53279884 -123694256 - L1M4 LINE L1 -2883 3263 3154 2308 82 10 0 chrX 53279884 53280176 -123693964 - AluSp SINE Alu -18 295 1 1910 224 19 48 chrX 53280176 53280293 -123693847 - L1M4 LINE L1 -2992 3154 3035 694 143 0 0 chrX 53280308 53280406 -123693734 - FLAM_A SINE Alu -27 115 18 1722 199 22 34 chrX 53280406 53280680 -123693460 - L1M4 LINE L1 -3105 3041 2772 2089 118 10 3 chrX 53280680 53280969 -123693171 - AluSx SINE Alu -21 291 1 1722 199 22 34 chrX 53280969 53281110 -123693030 - L1M4 LINE L1 -3374 2772 2631 704 179 5 70 chrX 53281185 53281251 -123692889 - L1M4 LINE L1 -3526 2620 2551 1977 163 3 0 chrX 53281251 53281552 -123692588 + AluJo SINE Alu 1 302 -10 704 179 5 70 chrX 53281552 53281686 -123692454 - L1M4 LINE L1 -3595 2551 2433 187 318 23 45 chrX 53284029 53284117 -123690023 + L2 LINE L2 3004 3089 -183 221 315 65 54 chrX 53284646 53284738 -123689402 + MIR SINE MIR 36 128 -80 435 211 0 0 chrX 53284754 53284849 -123689291 + (TG)n Simple_repeat Simple_repeat 2 96 0 268 196 0 82 chrX 53284985 53285082 -123689058 + L1MC4 LINE L1 6615 6703 -1339 288 130 0 0 chrX 53285082 53285128 -123689012 + (TA)n Simple_repeat Simple_repeat 2 47 0 779 110 0 0 chrX 53285128 53285228 -123688912 - AluJ/FLAM SINE Alu -212 100 1 235 213 27 13 chrX 53285243 53285318 -123688822 + CT-rich Low_complexity Low_complexity 1 76 0 1862 154 10 7 chrX 53285348 53285641 -123688499 - AluJb SINE Alu -18 294 1 628 163 0 0 chrX 53285643 53285735 -123688405 + MER68 LTR ERV1 467 558 -4 315 219 27 14 chrX 53285737 53285810 -123688330 + MIR SINE MIR 123 196 -66 6066 124 19 53 chrX 53285931 53287471 -123686669 + SVA Other Other 1 1123 -263 2208 128 0 0 chrX 53287765 53288061 -123686079 - AluSx SINE Alu -12 300 5 267 180 43 50 chrX 53288125 53288286 -123685854 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 * 398 180 52 17 chrX 53288166 53288338 -123685802 + (TA)n Simple_repeat Simple_repeat 1 178 0 1989 151 52 44 chrX 53288487 53288831 -123685309 - MER7A DNA MER2_type 0 346 2 301 239 33 11 chrX 53288975 53289067 -123685073 - L1MC4a LINE L1 -1902 5906 5813 615 256 98 18 chrX 53289076 53289320 -123684820 - L1MC4a LINE L1 -471 5699 5437 44134 47 2 2 chrX 53289321 53295473 -123678667 + L1PA4 LINE L1 1 6155 0 829 132 0 0 chrX 53295664 53295778 -123678362 + FRAM SINE Alu 33 146 -30 2283 100 0 0 chrX 53295887 53296177 -123677963 + AluSx SINE Alu 1 290 -22 587 280 111 55 chrX 53298802 53299199 -123674941 + MLT1J LTR MaLR 1 419 -92 411 73 0 0 chrX 53299244 53299299 -123674841 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 384 274 78 49 chrX 53299446 53299691 -123674449 + HAL1 LINE L1 13 264 -2243 4516 234 79 45 chrX 53299696 53300508 -123673632 + HAL1 LINE L1 463 1246 -1261 1834 135 11 11 chrX 53300508 53300790 -123673350 + AluJb SINE Alu 1 282 -30 209 83 28 0 chrX 53300796 53300832 -123673308 + (CAA)n Simple_repeat Simple_repeat 2 38 0 4516 234 79 45 chrX 53300832 53301379 -123672761 + HAL1 LINE L1 1250 1777 -730 2261 35 0 0 chrX 53301379 53301659 -123672481 - AluY SINE Alu 0 307 28 4516 234 79 45 chrX 53301659 53302038 -123672102 + HAL1 LINE L1 1777 2358 -149 2132 110 45 0 chrX 53302134 53302425 -123671715 - AluSx SINE Alu -8 304 1 1802 126 7 4 chrX 53302429 53302698 -123671442 - AluJb SINE Alu -19 293 24 716 221 61 17 chrX 53303151 53303332 -123670808 + MER5A DNA MER1_type 1 189 0 2276 105 0 10 chrX 53306660 53306973 -123667167 + AluSg SINE Alu 1 310 0 280 85 43 21 chrX 53307134 53307181 -123666959 - L1P5 LINE L1 -364 5792 5745 2360 138 37 0 chrX 53307210 53307565 -123666575 + L1PB4 LINE L1 5789 6156 0 968 170 42 61 chrX 53308028 53308179 -123665961 - AluJo SINE Alu -24 288 131 6439 97 36 39 chrX 53308179 53310369 -123663771 + SVA Other Other 3 1385 -1 968 170 42 61 chrX 53310369 53310420 -123663720 - AluJo SINE Alu -181 131 81 821 183 0 0 chrX 53310426 53310557 -123663583 - FLAM_C SINE Alu -2 131 1 2745 10 0 0 chrX 53310728 53311025 -123663115 - AluY SINE Alu -14 297 1 268 186 0 0 chrX 53312647 53312690 -123661450 - MER66B LTR ERV1 -146 340 298 2280 127 0 0 chrX 53313227 53313535 -123660605 - AluSx SINE Alu -2 310 3 370 250 12 12 chrX 53313606 53313690 -123660450 - MIR SINE MIR -170 92 9 270 56 37 19 chrX 53315366 53315420 -123658720 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 316 324 46 12 chrX 53317780 53317953 -123656187 + L3b LINE CR1 1147 1325 -258 1113 236 36 16 chrX 53318411 53318661 -123655479 - MIR SINE MIR 0 262 8 358 206 122 19 chrX 53319376 53319483 -123654657 + L1ME4a LINE L1 6003 6120 -1 3532 152 16 77 chrX 53319516 53319611 -123654529 + L1MC4a LINE L1 4966 5065 -1081 2485 76 0 0 chrX 53319611 53319915 -123654225 - AluY SINE Alu -7 304 1 3532 152 16 77 chrX 53319915 53319973 -123654167 + L1MC4a LINE L1 5065 5125 -1021 3074 178 59 5 chrX 53319973 53320580 -123653560 + L1MB8 LINE L1 5539 6178 0 3532 152 16 77 chrX 53320580 53320766 -123653374 + L1MC4a LINE L1 5125 5321 -825 4180 115 43 82 chrX 53320766 53321026 -123653114 + L1MB3 LINE L1 5459 5728 -455 2001 145 10 7 chrX 53321026 53321330 -123652810 - AluJo SINE Alu -7 305 1 4180 115 43 82 chrX 53321330 53321342 -123652798 + L1MB3 LINE L1 5728 5739 -444 1057 192 6 0 chrX 53321342 53321514 -123652626 - FAM SINE Alu -2 173 1 4180 115 43 82 chrX 53321514 53321987 -123652153 + L1MB3 LINE L1 5739 6176 -7 3532 152 16 77 chrX 53321987 53322858 -123651282 + L1MC4a LINE L1 5321 5398 -748 725 219 13 0 chrX 53322878 53323033 -123651107 - L1PB4 LINE L1 -106 6050 5894 725 149 0 0 chrX 53323040 53323154 -123650986 + L1PB4 LINE L1 6041 6154 -2 4740 123 28 20 chrX 53323160 53323843 -123650297 - L1MB2 LINE L1 -7 6164 5473 186 43 0 0 chrX 53323843 53323866 -123650274 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 4740 123 28 20 chrX 53323866 53323929 -123650211 - L1MB2 LINE L1 -698 5473 5412 3313 166 144 87 chrX 53323929 53324838 -123649302 + L1MC4a LINE L1 6099 7059 -749 1914 130 65 0 chrX 53325369 53325662 -123648478 - AluSx SINE Alu 0 312 1 1875 281 211 18 chrX 53325893 53326950 -123647190 + L2 LINE L2 1483 2743 -571 1009 149 23 34 chrX 53327014 53327189 -123646951 + Tigger1 DNA MER2_type 1 173 -2245 * 1444 111 10 0 chrX 53327176 53327384 -123646756 + Tigger1 DNA MER2_type 2209 2418 0 273 314 0 29 chrX 53327385 53327487 -123646653 + L2 LINE L2 2850 2948 -324 * 1138 222 45 0 chrX 53327475 53327696 -123646444 - MIR SINE MIR -21 241 11 864 214 52 17 chrX 53327697 53327870 -123646270 + MER8 DNA MER2_type 1 179 -60 527 355 8 8 chrX 53327950 53328184 -123645956 + L2 LINE L2 2629 2862 -452 585 228 62 7 chrX 53329692 53329837 -123644303 - MIR SINE MIR -108 154 2 451 263 199 6 chrX 53329987 53330158 -123643982 + MIR SINE MIR 5 208 -54 1494 183 10 89 chrX 53330181 53330564 -123643576 + MLT1A1 LTR MaLR 1 353 -12 1217 204 4 31 chrX 53332290 53332515 -123641625 + MER20 DNA MER1_type 1 219 0 305 364 105 8 chrX 53332688 53332869 -123641271 + MIR SINE MIR 15 211 -51 1458 124 9 14 chrX 53332911 53333129 -123641011 + L1PB2 LINE L1 5935 6151 0 1894 171 7 0 chrX 53333141 53333439 -123640701 + AluJb SINE Alu 1 300 -12 1458 164 0 0 chrX 53333705 53333931 -123640209 + AluJb SINE Alu 69 294 -18 310 306 81 0 chrX 53334314 53334425 -123639715 - L2 LINE L2 -16 3256 3137 345 208 10 62 chrX 53334473 53334569 -123639571 + L1ME2 LINE L1 6047 6137 -27 1969 114 37 0 chrX 53334595 53334908 -123639232 + AluSx SINE Alu 1 323 0 206 303 56 22 chrX 53335192 53335281 -123638859 - L2 LINE L2 -226 3046 2955 * 643 317 146 53 chrX 53335275 53336108 -123638032 - L2 LINE L2 -14 3258 2504 2527 66 0 19 chrX 53336108 53336425 -123637715 + AluY SINE Alu 1 311 0 643 317 146 53 chrX 53336425 53337292 -123636848 - L2 LINE L2 -768 2504 1560 4339 92 21 13 chrX 53337743 53338364 -123635776 - L1MA4A LINE L1 -6 6297 5672 374 344 78 8 chrX 53338608 53338852 -123635288 - L2 LINE L2 -1217 2097 1837 543 194 0 19 chrX 53338949 53339057 -123635083 + L1ME3A LINE L1 6065 6170 0 636 288 23 40 chrX 53339156 53339432 -123634708 + L1ME3A LINE L1 4812 5085 -1061 2153 85 0 4 chrX 53339432 53339736 -123634404 - AluSc SINE Alu 0 303 1 636 288 23 40 chrX 53339736 53339760 -123634380 + L1ME3A LINE L1 5085 5108 -1038 1713 248 99 40 chrX 53339765 53340483 -123633657 + L1ME3A LINE L1 5188 5950 -212 2266 122 0 0 chrX 53340541 53340853 -123633287 + AluSx SINE Alu 1 312 0 2045 141 7 0 chrX 53340875 53341174 -123632966 + AluJo SINE Alu 1 301 -11 406 284 54 44 chrX 53341194 53341398 -123632742 + L1ME3A LINE L1 5963 6168 -2 218 324 54 0 chrX 53341433 53341507 -123632633 - L2 LINE L2 -1524 1790 1713 1088 178 39 10 chrX 53341513 53341721 -123632419 + L1ME3A LINE L1 5663 5876 -294 630 176 176 25 chrX 53341724 53341883 -123632257 + MER53 DNA DNA 1 183 -6 735 240 64 12 chrX 53341883 53342110 -123632030 + L1ME3A LINE L1 5862 6125 -45 253 124 45 56 chrX 53342128 53342217 -123631923 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 366 248 132 0 chrX 53342377 53342498 -123631642 + L1ME2 LINE L1 5335 5471 -2337 315 267 33 0 chrX 53343538 53343658 -123630482 + L1ME3A LINE L1 5824 5947 -223 367 294 171 48 chrX 53343772 53344276 -123629864 + L2 LINE L2 1859 2424 -890 335 299 73 15 chrX 53344727 53344864 -123629276 - MIR SINE MIR -15 247 103 235 290 218 18 chrX 53345513 53346017 -123628123 + L1M4 LINE L1 2452 3056 -3090 1890 176 65 87 chrX 53346043 53346274 -123627866 + L1MC5 LINE L1 7299 7534 -427 2380 112 0 0 chrX 53346274 53346578 -123627562 + AluSx SINE Alu 1 304 -8 1890 176 65 87 chrX 53346578 53346743 -123627397 + L1MC5 LINE L1 7534 7701 -260 1657 155 54 24 chrX 53346743 53347040 -123627100 - AluJo SINE Alu -6 306 1 1890 176 65 87 chrX 53347040 53347274 -123626866 + L1MC5 LINE L1 7701 7916 -45 305 307 78 18 chrX 53347417 53347561 -123626579 + L1M4 LINE L1 3254 3411 -2735 1912 161 6 3 chrX 53347561 53347872 -123626268 - AluJo SINE Alu 0 312 1 305 307 78 18 chrX 53347872 53347893 -123626247 + L1M4 LINE L1 3411 3429 -2717 1841 183 47 6 chrX 53348007 53348367 -123625773 + L1ME2 LINE L1 5517 5891 -273 360 0 0 0 chrX 53348368 53348408 -123625732 + (CA)n Simple_repeat Simple_repeat 1 40 0 932 209 12 58 chrX 53348546 53348786 -123625354 + L1ME2 LINE L1 5913 6142 -22 1961 147 3 0 chrX 53348786 53349085 -123625055 - AluSx SINE Alu -12 300 1 932 209 12 58 chrX 53349085 53349103 -123625037 + L1ME2 LINE L1 6142 6159 -5 889 166 13 0 chrX 53349115 53349272 -123624868 + L1MA9 LINE L1 6153 6311 -1 395 226 84 11 chrX 53349370 53349560 -123624580 + L1MC4a LINE L1 5185 5388 -758 461 243 130 95 chrX 53349566 53349937 -123624203 + L1MC4a LINE L1 5461 5866 -255 2110 121 3 10 chrX 53349937 53350242 -123623898 + AluSx SINE Alu 1 303 -9 461 243 130 95 chrX 53350242 53350507 -123623633 + L1MC4a LINE L1 5866 6120 -1 1761 217 43 28 chrX 53350628 53351065 -123623075 + L1MB7 LINE L1 521 964 -5578 * 4553 155 76 65 chrX 53351062 53351724 -123622416 + L1MB7 LINE L1 4294 4947 -1735 1513 179 61 7 chrX 53351724 53352004 -123622136 + AluJb SINE Alu 3 297 -15 2232 115 6 13 chrX 53352006 53352318 -123621822 + AluSx SINE Alu 1 310 -2 4553 155 76 65 chrX 53352318 53353687 -123620453 + L1MB7 LINE L1 4947 6682 0 1600 112 142 26 chrX 53353686 53353885 -123620255 + L1MB7 LINE L1 5593 5840 -338 * 2209 103 6 29 chrX 53353885 53354197 -123619943 + AluSx SINE Alu 1 305 -7 1600 112 142 26 chrX 53354197 53354300 -123619840 + L1MB7 LINE L1 5840 5930 -248 5603 23 0 0 chrX 53354300 53354903 -123619237 + L1PA3 LINE L1 5548 6150 -5 1261 162 32 16 chrX 53354905 53355152 -123618988 + L1MB7 LINE L1 5925 6175 -9 1261 340 67 23 chrX 53355466 53356167 -123617973 + L3 LINE CR1 35 766 -811 188 33 0 33 chrX 53356184 53356214 -123617926 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 323 309 178 13 chrX 53357397 53357549 -123616591 + MIR3 SINE MIR 27 203 -5 23 68 0 0 chrX 53359024 53359068 -123615072 + AT_rich Low_complexity Low_complexity 1 44 0 1044 146 0 32 chrX 53359191 53359376 -123614764 + MER3 DNA MER1_type 31 209 0 471 182 105 28 chrX 53359745 53359888 -123614252 + L1ME4a LINE L1 5965 6118 -3 224 236 55 0 chrX 53360159 53360214 -123613926 + MIR SINE MIR 205 262 0 1692 156 18 18 chrX 53360314 53360597 -123613543 + AluJo SINE Alu 1 283 -29 1177 140 0 0 chrX 53360711 53360882 -123613258 - AluJo SINE Alu -141 171 1 482 178 22 133 chrX 53361142 53361277 -123612863 + L2 LINE L2 3189 3308 -5 1992 153 3 0 chrX 53362486 53362787 -123611353 + AluJb SINE Alu 1 302 -10 22 0 0 0 chrX 53362886 53362908 -123611232 + AT_rich Low_complexity Low_complexity 1 22 0 2375 84 0 0 chrX 53362939 53363235 -123610905 - AluY SINE Alu -15 296 1 21 0 0 0 chrX 53363276 53363297 -123610843 + AT_rich Low_complexity Low_complexity 1 21 0 2023 122 7 0 chrX 53363397 53363685 -123610455 + AluSx SINE Alu 1 290 -22 1648 140 43 14 chrX 53363801 53364080 -123610060 - AluJb SINE Alu -24 288 2 7145 139 65 6 chrX 53364212 53365373 -123608767 + Tigger3b DNA MER2_type 1 1230 -1 285 246 107 33 chrX 53366102 53366224 -123607916 + L3 LINE CR1 1130 1260 -317 2316 222 66 4 chrX 53366231 53366789 -123607351 + L1MC4 LINE L1 7309 7901 -141 692 256 107 62 chrX 53366911 53367219 -123606921 + L3 LINE CR1 1254 1575 -2 202 337 12 12 chrX 53367425 53367511 -123606629 + L2 LINE L2 2998 3083 -189 26 0 0 0 chrX 53367615 53367641 -123606499 + AT_rich Low_complexity Low_complexity 1 26 0 199 252 61 104 chrX 53367645 53367760 -123606380 + L2 LINE L2 3121 3230 -42 352 250 54 22 chrX 53367940 53368032 -123606108 + L2 LINE L2 3202 3296 -17 2448 65 3 0 chrX 53369873 53370165 -123603975 + AluSp SINE Alu 7 299 -14 813 165 0 0 chrX 53371239 53371378 -123602762 + FLAM_A SINE Alu 1 139 0 1938 133 7 3 chrX 53372844 53373137 -123601003 + AluSx SINE Alu 1 294 -18 274 298 105 18 chrX 53373181 53373295 -123600845 - MER5A DNA MER1_type -7 182 59 206 370 9 9 chrX 53377433 53377541 -123596599 + GA-rich Low_complexity Low_complexity 3 110 0 498 377 60 36 chrX 53378953 53379369 -123594771 + L2 LINE L2 2827 3252 -20 361 333 32 0 chrX 53379401 53379524 -123594616 + MIR3 SINE MIR 81 207 -1 418 299 6 61 chrX 53379743 53379933 -123594207 + MIR SINE MIR 6 184 -67 1855 168 18 12 chrX 53381633 53381972 -123592168 + MER58B DNA MER1_type 1 341 0 2481 69 0 25 chrX 53382894 53383211 -123590929 + AluY SINE Alu 1 309 -2 1420 259 68 72 chrX 53383228 53383943 -123590197 + L1ME3A LINE L1 5119 5835 -335 1324 175 39 106 chrX 53383943 53384331 -123589809 + MLT1A1 LTR MaLR 3 364 -1 1420 259 68 72 chrX 53384331 53384370 -123589770 + L1ME3A LINE L1 5835 5873 -297 2245 113 3 0 chrX 53384370 53384671 -123589469 + AluSx SINE Alu 1 302 -10 1420 259 68 72 chrX 53384671 53384751 -123589389 + L1ME3A LINE L1 5873 5948 -222 209 163 0 61 chrX 53384846 53384895 -123589245 + GA-rich Low_complexity Low_complexity 1 46 0 198 313 15 0 chrX 53385072 53385139 -123589001 + MIR3 SINE MIR 91 158 -50 * 323 258 277 6 chrX 53385129 53385288 -123588852 - MIR SINE MIR -42 220 19 2435 88 0 0 chrX 53385349 53385656 -123588484 + AluSx SINE Alu 1 307 -5 195 42 0 0 chrX 53385694 53385718 -123588422 + (ATG)n Simple_repeat Simple_repeat 2 25 0 554 262 29 24 chrX 53386107 53386313 -123587827 + L1ME LINE L1 5482 5688 -433 304 311 0 40 chrX 53386631 53386779 -123587361 + GA-rich Low_complexity Low_complexity 2 143 0 519 68 0 0 chrX 53387241 53387314 -123586826 - L1MD2 LINE L1 -1 6358 6286 330 300 40 60 chrX 53388142 53388292 -123585848 + Charlie8 DNA MER1_type 1 147 -2270 21 36 0 0 chrX 53388421 53388449 -123585691 + AT_rich Low_complexity Low_complexity 1 28 0 250 220 0 0 chrX 53388547 53388597 -123585543 + Charlie8 DNA MER1_type 133 182 -2235 297 109 0 0 chrX 53389960 53390006 -123584134 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 753 189 25 40 chrX 53392314 53392360 -123581780 - L1ME3 LINE L1 -29 6133 6088 2398 152 30 69 chrX 53392360 53392885 -123581255 + MLT1D LTR MaLR 1 505 0 753 189 25 40 chrX 53392885 53393013 -123581127 - L1ME3 LINE L1 -74 6088 5965 309 250 25 12 chrX 53393238 53393318 -123580822 + MLT1L LTR MaLR 1 81 -534 1216 265 89 24 chrX 53393349 53393775 -123580365 + MLT1L LTR MaLR 149 602 -13 496 288 120 5 chrX 53394237 53394428 -123579712 - MIR SINE MIR -39 223 11 365 180 18 18 chrX 53394436 53394547 -123579593 + CT-rich Low_complexity Low_complexity 4 114 0 237 180 20 0 chrX 53394907 53394957 -123579183 - L2 LINE L2 0 3313 3263 296 80 60 0 chrX 53395389 53395439 -123578701 + GA-rich Low_complexity Low_complexity 1 53 0 594 263 64 6 chrX 53395975 53396146 -123577994 - MIR SINE MIR -50 212 32 1821 197 124 12 chrX 53396738 53397256 -123576884 + L2 LINE L2 2289 2864 -450 803 226 0 0 chrX 53397308 53397454 -123576686 - FRAM SINE Alu -31 145 1 497 251 76 24 chrX 53397498 53397709 -123576431 + L2 LINE L2 3079 3300 -13 1511 156 34 0 chrX 53397731 53397969 -123576171 - AluJb SINE Alu -27 285 40 679 253 94 53 chrX 53398025 53398270 -123575870 + MIR SINE MIR 8 262 0 383 205 0 0 chrX 53398502 53398580 -123575560 + MIR3 SINE MIR 108 185 -23 2351 104 7 3 chrX 53402626 53402934 -123571206 - AluSx SINE Alu -3 309 1 483 292 131 19 chrX 53402938 53403399 -123570741 - L1ME3 LINE L1 -248 5873 5351 531 191 75 34 chrX 53403737 53403906 -123570234 - MIR3 SINE MIR -27 181 7 213 382 70 23 chrX 53403928 53404667 -123569473 + L2 LINE L2 2258 3052 -220 330 292 0 44 chrX 53404852 53405032 -123569108 + MIR SINE MIR 20 188 -62 523 293 32 13 chrX 53405499 53405656 -123568484 + MIR SINE MIR 43 202 -60 701 91 0 0 chrX 53405740 53405828 -123568312 - 5S rRNA rRNA -32 89 2 2426 99 0 0 chrX 53406707 53407010 -123567130 + AluSx SINE Alu 1 303 -9 513 238 18 24 chrX 53407323 53407487 -123566653 + MER103 DNA DNA 3 165 -1 383 264 88 115 chrX 53407823 53408345 -123565795 - MLT1J LTR MaLR -3 508 1 244 152 22 0 chrX 53408753 53408799 -123565341 + L2 LINE L2 3262 3308 -5 21 0 0 0 chrX 53409043 53409064 -123565076 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 53409166 53409187 -123564953 + AT_rich Low_complexity Low_complexity 1 21 0 2236 87 42 0 chrX 53409190 53409479 -123564661 + AluSc SINE Alu 1 301 -8 3500 153 89 15 chrX 53409655 53409677 -123564463 + L1MC3 LINE L1 7054 7073 -712 2329 97 0 3 chrX 53409677 53409977 -123564163 - AluSx SINE Alu -8 304 6 3500 153 89 15 chrX 53409977 53410627 -123563513 + L1MC3 LINE L1 7073 7776 -9 2080 114 14 3 chrX 53410670 53410960 -123563180 + AluSx SINE Alu 1 293 -19 1779 200 43 46 chrX 53410995 53411504 -123562636 + L1ME LINE L1 5194 5708 -456 1852 172 13 0 chrX 53411504 53411806 -123562334 - AluJo SINE Alu -4 308 3 4862 107 10 4 chrX 53411944 53412639 -123561501 - L1PA15 LINE L1 -1 6164 5466 24 53 0 0 chrX 53412746 53412784 -123561356 + AT_rich Low_complexity Low_complexity 1 38 0 1776 147 62 0 chrX 53413059 53413331 -123560809 - AluJo SINE Alu -23 289 1 1584 192 0 103 chrX 53413391 53413808 -123560332 + MLT1A2 LTR MaLR 1 374 0 2919 159 59 23 chrX 53414026 53414524 -123559616 - L1MD3 LINE L1 0 7995 7473 5528 63 10 24 chrX 53414524 53414695 -123559445 - LTR8 LTR ERV1 0 691 519 2409 95 0 0 chrX 53414695 53415000 -123559140 - AluSg SINE Alu -5 305 1 5528 63 10 24 chrX 53415000 53415529 -123558611 - LTR8 LTR ERV1 -172 519 1 2919 159 59 23 chrX 53415529 53415591 -123558549 - L1MD3 LINE L1 -522 7473 7415 315 65 22 0 chrX 53415591 53415637 -123558503 - MADE1 DNA Mariner 0 80 34 424 202 50 40 chrX 53415641 53415740 -123558400 - MLT1F1 LTR MaLR -433 134 35 1496 171 10 30 chrX 53415740 53416038 -123558102 - L1MD3 LINE L1 -879 7116 6825 317 324 48 38 chrX 53416039 53416332 -123557808 - L1 LINE L1 -3174 2972 2677 1834 114 0 0 chrX 53416531 53416768 -123557372 - AluSx SINE Alu -71 241 5 23 0 0 0 chrX 53417424 53417447 -123556693 + AT_rich Low_complexity Low_complexity 1 23 0 1977 122 50 0 chrX 53417447 53417725 -123556415 - AluSx SINE Alu -19 293 2 1990 130 58 20 chrX 53417972 53418318 -123555822 + L1MB7 LINE L1 5666 6024 -160 225 235 174 10 chrX 53419673 53419771 -123554369 - MIR SINE MIR -74 134 21 674 294 45 8 chrX 53419945 53420190 -123553950 - MIR SINE MIR -7 255 2 562 242 91 68 chrX 53420961 53421011 -123553129 - MIR SINE MIR -3 259 212 2359 110 0 0 chrX 53421011 53421321 -123552819 - AluSx SINE Alu -2 310 1 562 242 91 68 chrX 53421321 53421522 -123552618 - MIR SINE MIR -50 212 2 209 303 165 18 chrX 53422383 53422492 -123551648 + L2 LINE L2 3139 3263 -9 701 275 123 3 chrX 53424642 53425017 -123549123 - L1MC5 LINE L1 -31 7930 7511 357 306 31 41 chrX 53425043 53425239 -123548901 - L1ME3A LINE L1 -15 6155 5962 2138 144 3 0 chrX 53425356 53425662 -123548478 - AluJb SINE Alu -5 307 1 1432 194 9 13 chrX 53425668 53425983 -123548157 - L1MD3 LINE L1 -11 7984 7671 262 231 14 0 chrX 53426005 53426079 -123548061 - L1MD3 LINE L1 -287 7708 7542 * 626 235 56 38 chrX 53426075 53426288 -123547852 - L1MC5 LINE L1 -463 7498 7282 527 237 35 47 chrX 53427598 53427767 -123546373 - L1ME4a LINE L1 0 6121 5955 639 243 63 54 chrX 53427789 53428028 -123546112 + MIR SINE MIR 17 257 -5 599 214 137 1 chrX 53428029 53428204 -123545936 - L1ME4a LINE L1 -177 5944 5748 2372 98 0 3 chrX 53428380 53428686 -123545454 - AluSx SINE Alu -7 305 1 1777 209 76 3 chrX 53428834 53429202 -123544938 + MSTD LTR MaLR 2 396 0 399 152 0 0 chrX 53429754 53429833 -123544307 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 378 0 0 0 chrX 53430554 53430596 -123543544 + (TG)n Simple_repeat Simple_repeat 2 43 0 2405 84 3 3 chrX 53431034 53431333 -123542807 + AluSq SINE Alu 1 299 -14 241 240 107 13 chrX 53431667 53431742 -123542398 - MER102a DNA MER1_type 0 330 249 341 221 84 38 chrX 53431815 53431946 -123542194 - L1MC4 LINE L1 -4 8038 7902 351 0 0 0 chrX 53432258 53432297 -123541843 + (CA)n Simple_repeat Simple_repeat 2 40 0 1559 277 71 14 chrX 53432297 53432927 -123541213 - L1ME3 LINE L1 -259 5903 5240 708 225 59 89 chrX 53432955 53433184 -123540956 + MIR SINE MIR 9 228 -34 1581 118 48 0 chrX 53433211 53433439 -123540701 - L1PA13 LINE L1 -13 6150 5912 254 277 0 12 chrX 53433622 53433705 -123540435 - HAL1 LINE L1 -105 2402 2321 429 171 12 0 chrX 53433705 53433787 -123540353 + L2 LINE L2 3227 3309 -4 246 274 51 71 chrX 53433792 53433823 -123540317 - L1ME3 LINE L1 -924 5222 5192 1810 177 0 0 chrX 53433823 53434132 -123540008 - AluSx SINE Alu 0 309 1 246 274 51 71 chrX 53434132 53434296 -123539844 - L1ME3 LINE L1 -954 5192 5030 1129 231 259 10 chrX 53434606 53434746 -123539394 - L2 LINE L2 0 3313 3209 207 0 0 0 chrX 53434746 53434769 -123539371 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 1129 231 259 10 chrX 53434769 53435034 -123539106 - L2 LINE L2 -104 3209 2807 382 245 55 61 chrX 53435392 53435555 -123538585 - MLT1J LTR MaLR -2 509 348 582 244 54 12 chrX 53435586 53435754 -123538386 + L2 LINE L2 2575 2749 -565 598 191 61 8 chrX 53435754 53435885 -123538255 + L1MC4a LINE L1 5820 5957 -1851 198 132 79 0 chrX 53435888 53435964 -123538176 + (TA)n Simple_repeat Simple_repeat 1 82 0 225 265 23 76 chrX 53435967 53436099 -123538041 + L1MC4a LINE L1 5950 6074 -1734 374 252 22 15 chrX 53436109 53436244 -123537896 + L1MC4 LINE L1 7114 7249 -793 890 234 155 49 chrX 53436391 53436554 -123537586 + L1MC5 LINE L1 7304 7448 -513 1900 151 0 41 chrX 53436554 53436871 -123537269 + 7SLRNA srpRNA srpRNA 2 305 -15 890 234 155 49 chrX 53436871 53437262 -123536878 + L1MC5 LINE L1 7448 7917 -44 1246 276 106 18 chrX 53437272 53437770 -123536370 + L2 LINE L2 2737 3275 -38 2429 91 10 0 chrX 53437785 53438092 -123536048 - AluSg SINE Alu 0 310 1 254 208 0 0 chrX 53438131 53438179 -123535961 + L2 LINE L2 3257 3304 -9 261 0 0 0 chrX 53439308 53439337 -123534803 + (TG)n Simple_repeat Simple_repeat 2 30 0 347 286 85 16 chrX 53439383 53439572 -123534568 - L1ME3 LINE L1 -1488 4658 4457 318 329 67 7 chrX 53439585 53439734 -123534406 - L1ME3 LINE L1 -1784 4362 4205 266 177 0 32 chrX 53440080 53440142 -123533998 + L1MB7 LINE L1 6091 6150 -34 2814 96 5 26 chrX 53440147 53440434 -123533706 - THE1C LTR MaLR -2 373 93 2117 116 0 0 chrX 53440434 53440753 -123533387 + AluSx SINE Alu 1 319 0 2814 96 5 26 chrX 53440753 53440841 -123533299 - THE1C LTR MaLR -282 93 5 8190 115 35 13 chrX 53440843 53440923 -123533217 - THE1C-int LTR MaLR 0 1580 1503 2183 119 3 0 chrX 53440923 53441217 -123532923 - AluSx SINE Alu -17 295 1 8190 115 35 13 chrX 53441217 53442335 -123531805 - THE1C-int LTR MaLR -77 1503 356 * 44992 38 3 0 chrX 53442331 53448468 -123525672 + L1PA4 LINE L1 3 6155 0 2490 68 5 128 chrX 53448473 53448901 -123525239 - THE1C-int LTR MaLR -1205 375 1 2810 90 33 6 chrX 53448901 53449266 -123524874 - THE1C LTR MaLR 0 375 1 195 42 0 0 chrX 53449292 53449316 -123524824 + (A)n Simple_repeat Simple_repeat 1 24 0 2526 202 102 15 chrX 53450094 53450508 -123523632 + L1MD2 LINE L1 5695 6180 -179 186 103 0 0 chrX 53450508 53450537 -123523603 + (CA)n Simple_repeat Simple_repeat 2 30 0 2526 202 102 15 chrX 53450537 53450731 -123523409 + L1MD2 LINE L1 6180 6356 -3 4514 155 54 36 chrX 53450817 53451608 -123522532 - L1MB7 LINE L1 -16 6168 5344 1985 140 3 10 chrX 53451608 53451908 -123522232 - AluJo SINE Alu -14 298 1 4514 155 54 36 chrX 53451908 53452468 -123521672 - L1MB7 LINE L1 -840 5344 4796 340 315 81 22 chrX 53452630 53452856 -123521284 + MIR SINE MIR 14 246 -16 509 353 72 54 chrX 53454917 53455359 -123518781 + L2 LINE L2 2809 3258 -14 228 292 56 22 chrX 53455353 53455442 -123518698 + L2 LINE L2 2955 3046 -226 * 1639 245 77 21 chrX 53455513 53456247 -123517893 - L2 LINE L2 -1 3312 2531 455 314 107 21 chrX 53456249 53456389 -123517751 + L2 LINE L2 3119 3270 -2 209 222 28 0 chrX 53459364 53459436 -123514704 + C-rich Low_complexity Low_complexity 4 77 0 2722 242 49 21 chrX 53459801 53461180 -123512960 + L1M3a LINE L1 313 1726 -4309 825 141 47 0 chrX 53461181 53461309 -123512831 + AluJo SINE Alu 1 134 -178 189 254 0 63 chrX 53461513 53461576 -123512564 + L2 LINE L2 3255 3313 0 1939 139 0 14 chrX 53461642 53461929 -123512211 - AluJb SINE Alu -27 285 3 320 253 0 13 chrX 53462823 53462898 -123511242 - L2 LINE L2 -9 3263 3190 192 97 0 0 chrX 53463615 53463646 -123510494 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 805 158 0 0 chrX 53463646 53463766 -123510374 - FLAM_C SINE Alu -23 120 1 648 256 0 8 chrX 53463784 53463917 -123510223 + L2 LINE L2 3122 3253 -19 1434 133 0 0 chrX 53463936 53464154 -123509986 + AluSg/x SINE Alu 94 311 -1 907 221 113 0 chrX 53464295 53464499 -123509641 - MIR SINE MIR -33 229 3 318 262 12 0 chrX 53464515 53464599 -123509541 - MIR SINE MIR -81 127 43 2323 93 0 29 chrX 53465461 53465773 -123508367 + AluSx SINE Alu 1 303 -9 370 123 0 0 chrX 53466054 53466111 -123508029 - AluSp/q SINE Alu -3 300 244 2010 168 29 31 chrX 53466287 53466704 -123507436 + Charlie4a DNA MER1_type 1 416 -92 1812 99 16 0 chrX 53466902 53467144 -123506996 + AluY SINE Alu 35 280 -31 207 0 0 0 chrX 53467148 53467171 -123506969 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 839 182 0 0 chrX 53467202 53467334 -123506806 + FLAM_C SINE Alu 1 132 -1 335 244 77 0 chrX 53468010 53468088 -123506052 + L2 LINE L2 3229 3312 -1 213 121 0 0 chrX 53468704 53468737 -123505403 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1537 200 17 21 chrX 53468737 53469162 -123504978 - L1ME LINE L1 -707 5459 5040 1835 159 0 28 chrX 53469190 53469511 -123504629 - AluJb SINE Alu 0 312 1 274 213 0 13 chrX 53469511 53469586 -123504554 - L1ME LINE L1 -1089 5057 4984 3325 165 55 28 chrX 53469586 53469976 -123504164 - L1MA9 LINE L1 0 6312 5934 682 235 0 0 chrX 53469976 53470095 -123504045 - FLAM_A SINE Alu -14 119 1 3325 165 55 28 chrX 53470095 53470219 -123503921 - L1MA9 LINE L1 -378 5934 5815 261 0 0 0 chrX 53470219 53470248 -123503892 + (TG)n Simple_repeat Simple_repeat 1 29 0 3325 165 55 28 chrX 53470248 53470370 -123503770 - L1MA9 LINE L1 -497 5815 5658 10458 160 12 7 chrX 53470376 53472386 -123501754 - L1MA9 LINE L1 -722 5590 3568 1336 119 43 51 chrX 53472386 53472621 -123501519 - AluSg/x SINE Alu -11 301 69 1572 169 19 3 chrX 53472627 53472946 -123501194 - L1MA9 LINE L1 -2609 3537 3214 679 281 0 0 chrX 53472929 53473139 -123501001 - L1M4 LINE L1 -3024 4541 4332 * 798 267 0 4 chrX 53473228 53473453 -123500687 - L1M4 LINE L1 -4430 3135 2912 279 288 27 54 chrX 53473895 53474006 -123500134 + MIR SINE MIR 27 134 -74 324 155 0 36 chrX 53474049 53474133 -123500007 + CT-rich Low_complexity Low_complexity 2 82 0 203 342 13 0 chrX 53474220 53474299 -123499841 + GA-rich Low_complexity Low_complexity 5 84 0 2406 77 0 19 chrX 53474554 53474734 -123499406 - AluSx SINE Alu 0 312 139 2503 48 0 10 chrX 53474734 53475043 -123499097 - AluY SINE Alu -5 306 1 2406 77 0 19 chrX 53475043 53475172 -123498968 - AluSx SINE Alu -173 139 9 1674 194 0 29 chrX 53475836 53476145 -123497995 + AluJo SINE Alu 1 300 -12 224 246 0 134 chrX 53476163 53476297 -123497843 + MIR SINE MIR 61 176 -86 2082 136 0 22 chrX 53476536 53476853 -123497287 - AluJo SINE Alu -2 310 1 273 322 182 44 chrX 53477002 53477417 -123496723 + L2 LINE L2 2579 3045 -227 245 267 0 17 chrX 53477456 53477516 -123496624 + MIR SINE MIR 183 241 -21 463 256 38 31 chrX 53477536 53477696 -123496444 + MIR SINE MIR 90 250 -12 237 98 0 0 chrX 53477937 53477978 -123496162 + (T)n Simple_repeat Simple_repeat 1 41 0 185 278 10 93 chrX 53478258 53478355 -123495785 - L2 LINE L2 -4 3268 3180 306 356 23 14 chrX 53478420 53478639 -123495501 - L2 LINE L2 -179 3093 2873 660 210 12 25 chrX 53478643 53478805 -123495335 + MER113 DNA MER1_type? 5 164 -357 410 347 68 34 chrX 53478920 53479246 -123494894 - L2 LINE L2 -434 2880 2544 324 0 0 0 chrX 53479257 53479293 -123494847 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 358 347 106 9 chrX 53479336 53479590 -123494550 - L2 LINE L2 -283 3030 2748 484 286 43 16 chrX 53479781 53479940 -123494200 - L2 LINE L2 -665 2649 2486 707 268 100 13 chrX 53479940 53480179 -123493961 + MIR SINE MIR 1 260 -2 673 259 12 0 chrX 53480328 53480494 -123493646 + L1M4 LINE L1 2380 2547 -3599 * 4016 204 55 40 chrX 53480492 53481681 -123492459 + L1M4 LINE L1 3404 4610 -1536 520 268 43 61 chrX 53481686 53481966 -123492174 + L1MC4 LINE L1 7738 8012 -30 1443 230 27 5 chrX 53482003 53482373 -123491767 + L1M4 LINE L1 4616 4993 -1153 847 209 35 6 chrX 53482376 53482548 -123491592 + L1M3a LINE L1 5 181 -5774 10496 160 63 84 chrX 53682593 53682687 -123291453 - L1ME3A LINE L1 -276 5894 5800 207 0 0 0 chrX 53682687 53682710 -123291430 + (TG)n Simple_repeat Simple_repeat 1 23 0 10496 160 63 84 chrX 53682710 53684848 -123289292 - L1ME3A LINE L1 -370 5800 3440 1346 115 43 51 chrX 53684848 53685083 -123289057 - AluSg/x SINE Alu -11 301 69 10496 160 63 84 chrX 53685083 53685599 -123288541 - L1ME3A LINE L1 -2730 3440 2915 3099 235 35 29 chrX 53685749 53685906 -123288234 - L1M2 LINE L1 -4163 1872 1717 1624 181 13 30 chrX 53685906 53686210 -123287930 - AluJo SINE Alu -13 299 1 3099 235 35 29 chrX 53686210 53687381 -123286759 - L1M2 LINE L1 -4318 1717 547 1093 239 53 4 chrX 53687548 53687795 -123286345 - L1M2 LINE L1 -5692 263 5 1423 227 27 5 chrX 53687798 53688168 -123285972 - L1M4 LINE L1 -1153 4993 4616 489 268 43 61 chrX 53688205 53688485 -123285655 - L1MC4 LINE L1 -30 8012 7738 3950 203 55 40 chrX 53688490 53689680 -123284460 - L1M4 LINE L1 -1536 4610 3404 663 259 12 0 chrX 53689678 53689844 -123284296 - L1M4 LINE L1 -3599 2547 2380 * 624 289 92 4 chrX 53689993 53690232 -123283908 - MIR SINE MIR -2 260 1 431 286 43 16 chrX 53690232 53690391 -123283749 + L2 LINE L2 2486 2649 -665 305 339 93 11 chrX 53690652 53690835 -123283305 + L2 LINE L2 2833 3030 -283 324 0 0 0 chrX 53690878 53690914 -123283226 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 280 353 68 34 chrX 53690925 53691251 -123282889 + L2 LINE L2 2544 2880 -434 652 210 12 25 chrX 53691366 53691528 -123282612 - MER113 DNA MER1_type? -357 164 5 241 370 23 14 chrX 53691532 53691751 -123282389 + L2 LINE L2 2873 3093 -179 237 98 0 0 chrX 53692193 53692234 -123281906 + (A)n Simple_repeat Simple_repeat 1 41 0 413 265 40 20 chrX 53692475 53692626 -123281514 - MIR SINE MIR -12 250 97 229 267 0 17 chrX 53692655 53692715 -123281425 - MIR SINE MIR -21 241 183 213 329 90 48 chrX 53692754 53693169 -123280971 - L2 LINE L2 -227 3045 2579 2096 136 0 22 chrX 53693318 53693635 -123280505 + AluJo SINE Alu 1 310 -2 214 200 0 0 chrX 53693968 53694008 -123280132 - MIR SINE MIR -162 100 61 1659 197 0 29 chrX 53694026 53694335 -123279805 - AluJo SINE Alu -12 300 1 2472 72 0 16 chrX 53694999 53695128 -123279012 + AluSx SINE Alu 9 139 -173 2534 48 0 10 chrX 53695128 53695437 -123278703 + AluY SINE Alu 1 306 -5 2472 72 0 16 chrX 53695437 53695614 -123278526 + AluSx SINE Alu 139 310 -2 203 342 13 0 chrX 53695853 53695932 -123278208 + CT-rich Low_complexity Low_complexity 5 84 0 324 155 0 36 chrX 53696019 53696103 -123278037 + GA-rich Low_complexity Low_complexity 2 82 0 243 288 27 54 chrX 53696146 53696257 -123277883 - MIR SINE MIR -74 134 27 4837 133 24 19 chrX 53696729 53697556 -123276584 + L1MB3 LINE L1 5353 6183 0 2480 84 0 6 chrX 53697604 53697915 -123276225 - AluSc SINE Alu 0 309 1 2255 104 0 13 chrX 53698359 53698668 -123275472 + AluSq SINE Alu 1 305 -8 2485 161 27 27 chrX 53699075 53699560 -123274580 - Charlie4a DNA MER1_type -23 485 1 370 123 0 0 chrX 53699736 53699793 -123274347 + AluSp/q SINE Alu 244 300 -3 2341 93 0 29 chrX 53700074 53700386 -123273754 - AluSx SINE Alu -9 303 1 291 262 12 0 chrX 53701248 53701332 -123272808 + MIR SINE MIR 43 127 -81 837 221 113 0 chrX 53701348 53701552 -123272588 + MIR SINE MIR 3 229 -33 1443 133 0 0 chrX 53701693 53701911 -123272229 - AluSg/x SINE Alu -1 311 94 599 256 0 8 chrX 53701930 53702063 -123272077 - L2 LINE L2 -19 3253 3122 816 158 0 0 chrX 53702081 53702201 -123271939 + FLAM_C SINE Alu 1 120 -23 192 97 0 0 chrX 53702201 53702232 -123271908 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 296 253 0 13 chrX 53702949 53703024 -123271116 + L2 LINE L2 3190 3263 -9 233 318 99 26 chrX 53703354 53703505 -123270635 - L2 LINE L2 -81 3191 3030 1955 139 0 14 chrX 53703918 53704205 -123269935 + AluJb SINE Alu 3 285 -27 339 186 14 14 chrX 53704456 53704526 -123269614 + MIR SINE MIR 72 141 -67 580 191 18 0 chrX 53705085 53705195 -123268945 + MER81 DNA DNA 3 114 0 196 286 254 33 chrX 53705418 53705631 -123268509 + L2 LINE L2 2827 3086 -186 950 159 24 77 chrX 53706937 53707144 -123266996 + AluJo SINE Alu 87 282 -30 539 198 0 0 chrX 53707187 53707288 -123266852 + FRAM SINE Alu 74 174 -2 495 268 137 0 chrX 53707573 53707763 -123266377 + MIR SINE MIR 47 262 0 1680 107 5 0 chrX 53708106 53708322 -123265818 + AluJb SINE Alu 1 217 -95 254 53 0 123 chrX 53708323 53708380 -123265760 + FLAM SINE Alu 84 133 0 183 261 15 15 chrX 53708455 53708520 -123265620 - MIR SINE MIR -42 220 156 227 88 0 0 chrX 53708557 53708591 -123265549 - MIR SINE MIR -133 75 42 186 255 39 0 chrX 53709677 53709728 -123264412 + L2 LINE L2 3198 3250 -22 2374 73 105 11 chrX 53709951 53710333 -123263807 - L1MA2 LINE L1 0 6304 5887 2220 101 27 0 chrX 53711145 53711443 -123262697 + AluSg SINE Alu 1 306 -4 1631 128 121 8 chrX 53713161 53713418 -123260722 - AluJo SINE Alu -21 291 6 1085 158 35 55 chrX 53713717 53713971 -123260169 - L1MB8 LINE L1 -64 6114 5866 2250 104 7 0 chrX 53713975 53714274 -123259866 - AluSx SINE Alu -11 301 1 1775 200 81 41 chrX 53714313 53714872 -123259268 - L1MC5 LINE L1 -435 7526 6946 893 136 0 0 chrX 53714872 53714997 -123259143 + AluJo SINE Alu 1 125 -187 468 200 0 0 chrX 53715052 53715132 -123259008 + AluJo SINE Alu 130 209 -103 31 0 0 0 chrX 53715160 53715191 -123258949 + AT_rich Low_complexity Low_complexity 1 31 0 2207 103 0 10 chrX 53715249 53715539 -123258601 - AluSx SINE Alu -25 287 1 2383 166 112 2 chrX 53715566 53716083 -123258057 - L1MC3 LINE L1 -7 7778 7205 299 268 10 10 chrX 53716091 53716188 -123257952 - MLT1F1 LTR MaLR -436 131 35 1003 209 72 4 chrX 53716188 53716437 -123257703 - L1MC3 LINE L1 -688 7097 6832 1458 159 176 3 chrX 53716447 53716736 -123257404 + MER47A DNA MER2_type 28 366 0 1015 127 7 0 chrX 53716736 53716878 -123257262 - L1MC3 LINE L1 -952 6833 6691 832 224 72 53 chrX 53717089 53717379 -123256761 - L1MC5 LINE L1 -1049 6946 6626 770 278 53 50 chrX 53717766 53718165 -123255975 - HAL1b LINE L1 -690 658 259 2082 256 96 19 chrX 53718276 53719003 -123255137 + L1M2a LINE L1 867 1649 -5519 395 117 63 90 chrX 53719485 53719547 -123254593 - L1MB7 LINE L1 -12 6172 6113 2107 75 38 41 chrX 53719547 53719840 -123254300 - AluSg SINE Alu -6 304 13 395 117 63 90 chrX 53719840 53719888 -123254252 - L1MB7 LINE L1 -71 6113 6065 2000 227 56 33 chrX 53720482 53721058 -123253082 - L1ME3A LINE L1 0 6170 5582 559 255 23 46 chrX 53721089 53721305 -123252835 - L1ME3A LINE L1 -3016 3130 2920 297 109 0 0 chrX 53722823 53722869 -123251271 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 753 189 25 40 chrX 53725177 53725223 -123248917 - L1ME3 LINE L1 -29 6133 6088 2398 152 30 69 chrX 53725223 53725748 -123248392 + MLT1D LTR MaLR 1 505 0 753 189 25 40 chrX 53725748 53725876 -123248264 - L1ME3 LINE L1 -74 6088 5965 309 250 25 12 chrX 53726101 53726181 -123247959 + MLT1L LTR MaLR 1 81 -534 1216 265 89 24 chrX 53726212 53726638 -123247502 + MLT1L LTR MaLR 149 602 -13 496 288 120 5 chrX 53727100 53727291 -123246849 - MIR SINE MIR -39 223 11 365 180 18 18 chrX 53727299 53727410 -123246730 + CT-rich Low_complexity Low_complexity 4 114 0 237 180 20 0 chrX 53727770 53727820 -123246320 - L2 LINE L2 0 3313 3263 296 80 60 0 chrX 53728252 53728302 -123245838 + GA-rich Low_complexity Low_complexity 1 53 0 594 263 64 6 chrX 53728838 53729009 -123245131 - MIR SINE MIR -50 212 32 1821 197 124 12 chrX 53729601 53730119 -123244021 + L2 LINE L2 2289 2864 -450 803 226 0 0 chrX 53730171 53730317 -123243823 - FRAM SINE Alu -31 145 1 497 251 76 24 chrX 53730361 53730572 -123243568 + L2 LINE L2 3079 3300 -13 1511 156 34 0 chrX 53730594 53730832 -123243308 - AluJb SINE Alu -27 285 40 679 253 94 53 chrX 53730888 53731133 -123243007 + MIR SINE MIR 8 262 0 383 205 0 0 chrX 53731365 53731443 -123242697 + MIR3 SINE MIR 108 185 -23 2351 104 7 3 chrX 53735489 53735797 -123238343 - AluSx SINE Alu -3 309 1 483 292 131 19 chrX 53735801 53736262 -123237878 - L1ME3 LINE L1 -248 5873 5351 531 191 75 34 chrX 53736600 53736769 -123237371 - MIR3 SINE MIR -27 181 7 213 382 70 23 chrX 53736791 53737530 -123236610 + L2 LINE L2 2258 3052 -220 330 292 0 44 chrX 53737715 53737895 -123236245 + MIR SINE MIR 20 188 -62 523 293 32 13 chrX 53738362 53738519 -123235621 + MIR SINE MIR 43 202 -60 701 91 0 0 chrX 53738603 53738691 -123235449 - 5S rRNA rRNA -32 89 2 2426 99 0 0 chrX 53739570 53739873 -123234267 + AluSx SINE Alu 1 303 -9 513 238 18 24 chrX 53740186 53740350 -123233790 + MER103 DNA DNA 3 165 -1 383 264 88 115 chrX 53740686 53741208 -123232932 - MLT1J LTR MaLR -3 508 1 244 152 22 0 chrX 53741616 53741662 -123232478 + L2 LINE L2 3262 3308 -5 21 0 0 0 chrX 53741906 53741927 -123232213 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 53742029 53742050 -123232090 + AT_rich Low_complexity Low_complexity 1 21 0 2236 87 42 0 chrX 53742053 53742342 -123231798 + AluSc SINE Alu 1 301 -8 3500 153 89 15 chrX 53742518 53742540 -123231600 + L1MC3 LINE L1 7054 7073 -712 2329 97 0 3 chrX 53742540 53742840 -123231300 - AluSx SINE Alu -8 304 6 3500 153 89 15 chrX 53742840 53743490 -123230650 + L1MC3 LINE L1 7073 7776 -9 2080 114 14 3 chrX 53743533 53743823 -123230317 + AluSx SINE Alu 1 293 -19 1779 200 43 46 chrX 53743858 53744367 -123229773 + L1ME LINE L1 5194 5708 -456 1852 172 13 0 chrX 53744367 53744669 -123229471 - AluJo SINE Alu -4 308 3 4862 107 10 4 chrX 53744807 53745502 -123228638 - L1PA15 LINE L1 -1 6164 5466 24 53 0 0 chrX 53745609 53745647 -123228493 + AT_rich Low_complexity Low_complexity 1 38 0 1776 147 62 0 chrX 53745922 53746194 -123227946 - AluJo SINE Alu -23 289 1 1584 192 0 103 chrX 53746254 53746671 -123227469 + MLT1A2 LTR MaLR 1 374 0 2919 159 59 23 chrX 53746889 53747387 -123226753 - L1MD3 LINE L1 0 7995 7473 5528 63 10 24 chrX 53747387 53747558 -123226582 - LTR8 LTR ERV1 0 691 519 2409 95 0 0 chrX 53747558 53747863 -123226277 - AluSg SINE Alu -5 305 1 5528 63 10 24 chrX 53747863 53748392 -123225748 - LTR8 LTR ERV1 -172 519 1 2919 159 59 23 chrX 53748392 53748454 -123225686 - L1MD3 LINE L1 -522 7473 7415 315 65 22 0 chrX 53748454 53748500 -123225640 - MADE1 DNA Mariner 0 80 34 424 202 50 40 chrX 53748504 53748603 -123225537 - MLT1F1 LTR MaLR -433 134 35 1496 171 10 30 chrX 53748603 53748901 -123225239 - L1MD3 LINE L1 -879 7116 6825 317 324 48 38 chrX 53748902 53749195 -123224945 - L1 LINE L1 -3174 2972 2677 1834 114 0 0 chrX 53749394 53749631 -123224509 - AluSx SINE Alu -71 241 5 23 0 0 0 chrX 53750287 53750310 -123223830 + AT_rich Low_complexity Low_complexity 1 23 0 1977 122 50 0 chrX 53750310 53750588 -123223552 - AluSx SINE Alu -19 293 2 1990 130 58 20 chrX 53750835 53751181 -123222959 + L1MB7 LINE L1 5666 6024 -160 225 235 174 10 chrX 53752536 53752634 -123221506 - MIR SINE MIR -74 134 21 674 294 45 8 chrX 53752808 53753053 -123221087 - MIR SINE MIR -7 255 2 562 242 91 68 chrX 53753824 53753874 -123220266 - MIR SINE MIR -3 259 212 2359 110 0 0 chrX 53753874 53754184 -123219956 - AluSx SINE Alu -2 310 1 562 242 91 68 chrX 53754184 53754385 -123219755 - MIR SINE MIR -50 212 2 209 303 165 18 chrX 53755246 53755355 -123218785 + L2 LINE L2 3139 3263 -9 701 275 123 3 chrX 53757505 53757880 -123216260 - L1MC5 LINE L1 -31 7930 7511 357 306 31 41 chrX 53757906 53758102 -123216038 - L1ME3A LINE L1 -15 6155 5962 2138 144 3 0 chrX 53758219 53758525 -123215615 - AluJb SINE Alu -5 307 1 1432 194 9 13 chrX 53758531 53758846 -123215294 - L1MD3 LINE L1 -11 7984 7671 262 231 14 0 chrX 53758868 53758942 -123215198 - L1MD3 LINE L1 -287 7708 7542 * 626 235 56 38 chrX 53758938 53759151 -123214989 - L1MC5 LINE L1 -463 7498 7282 527 237 35 47 chrX 53760461 53760630 -123213510 - L1ME4a LINE L1 0 6121 5955 626 247 63 54 chrX 53760652 53760891 -123213249 + MIR SINE MIR 17 257 -5 388 210 179 6 chrX 53760892 53761054 -123213086 - L1ME4a LINE L1 -177 5944 5755 2038 97 4 0 chrX 53761382 53761639 -123212501 - AluSx SINE Alu -54 258 1 1777 209 76 3 chrX 53761787 53762155 -123211985 + MSTD LTR MaLR 2 396 0 399 152 0 0 chrX 53762707 53762786 -123211354 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 378 0 0 0 chrX 53763507 53763549 -123210591 + (TG)n Simple_repeat Simple_repeat 2 43 0 2405 84 3 3 chrX 53763987 53764286 -123209854 + AluSq SINE Alu 1 299 -14 241 240 107 13 chrX 53764620 53764695 -123209445 - Charlie8 DNA MER1_type -989 1428 1347 328 221 84 38 chrX 53764768 53764899 -123209241 - L1MC4 LINE L1 -4 8038 7902 351 0 0 0 chrX 53765210 53765249 -123208891 + (CA)n Simple_repeat Simple_repeat 2 40 0 1515 277 72 14 chrX 53765249 53765879 -123208261 - L1ME3 LINE L1 -259 5903 5240 640 255 24 54 chrX 53765907 53766136 -123208004 + MIR SINE MIR 9 228 -34 1514 122 48 0 chrX 53766161 53766391 -123207749 - L1PA13 LINE L1 -11 6152 5912 247 277 0 12 chrX 53766574 53766657 -123207483 - HAL1 LINE L1 -105 2402 2321 400 171 12 0 chrX 53766657 53766739 -123207401 + L2 LINE L2 3227 3309 -4 227 274 51 71 chrX 53766744 53766775 -123207365 - L1ME3 LINE L1 -924 5222 5192 1823 177 0 0 chrX 53766775 53767084 -123207056 - AluSx SINE Alu 0 309 1 227 274 51 71 chrX 53767084 53767248 -123206892 - L1ME3 LINE L1 -954 5192 5030 1002 231 249 8 chrX 53767558 53767698 -123206442 - L2 LINE L2 0 3313 3208 207 0 0 0 chrX 53767698 53767721 -123206419 + (TATAA)n Simple_repeat Simple_repeat 5 27 0 1002 231 249 8 chrX 53767721 53768003 -123206137 - L2 LINE L2 -105 3208 2791 380 245 55 61 chrX 53768344 53768507 -123205633 - MLT1J LTR MaLR -2 509 348 529 244 54 12 chrX 53768538 53768706 -123205434 + L2 LINE L2 2575 2749 -565 589 191 61 8 chrX 53768706 53768837 -123205303 + L1MC4a LINE L1 5820 5957 -1851 198 132 79 0 chrX 53768840 53768916 -123205224 + (TA)n Simple_repeat Simple_repeat 1 82 0 300 291 22 60 chrX 53768917 53769051 -123205089 + L1MC4a LINE L1 5946 6074 -1734 367 252 22 15 chrX 53769061 53769196 -123204944 + L1MC4 LINE L1 7114 7249 -793 845 234 155 49 chrX 53769343 53769506 -123204634 + L1MC5 LINE L1 7304 7448 -513 1922 151 0 41 chrX 53769506 53769823 -123204317 + 7SLRNA srpRNA srpRNA 2 305 -15 845 234 155 49 chrX 53769823 53770214 -123203926 + L1MC5 LINE L1 7448 7917 -44 1120 276 106 18 chrX 53770224 53770722 -123203418 + L2 LINE L2 2737 3275 -38 2449 91 10 0 chrX 53770737 53771044 -123203096 - AluSg SINE Alu 0 310 1 240 208 0 0 chrX 53771083 53771131 -123203009 + L2 LINE L2 3257 3304 -9 261 0 0 0 chrX 53772260 53772289 -123201851 + (TG)n Simple_repeat Simple_repeat 2 30 0 330 286 85 16 chrX 53772335 53772524 -123201616 - L1ME3 LINE L1 -1488 4658 4457 260 177 0 32 chrX 53773032 53773094 -123201046 + L1MB7 LINE L1 6091 6150 -34 2665 96 5 26 chrX 53773099 53773386 -123200754 - THE1C LTR MaLR -2 373 93 2137 116 0 0 chrX 53773386 53773705 -123200435 + AluSx SINE Alu 1 319 0 2665 96 5 26 chrX 53773705 53773793 -123200347 - THE1C LTR MaLR -282 93 5 8232 115 35 14 chrX 53773795 53773876 -123200264 - THE1C-int LTR MaLR 0 1580 1502 2196 119 3 0 chrX 53773876 53774170 -123199970 - AluSx SINE Alu -17 295 1 8232 115 35 14 chrX 53774170 53775288 -123198852 - THE1C-int LTR MaLR -78 1502 356 * 44991 38 3 0 chrX 53775284 53781421 -123192719 + L1PA4 LINE L1 3 6155 0 2497 68 5 128 chrX 53781426 53781854 -123192286 - THE1C-int LTR MaLR -1205 375 1 2661 90 33 6 chrX 53781854 53782219 -123191921 - THE1C LTR MaLR 0 375 1 195 42 0 0 chrX 53782245 53782269 -123191871 + (A)n Simple_repeat Simple_repeat 1 24 0 2497 202 102 15 chrX 53783047 53783461 -123190679 + L1MD2 LINE L1 5695 6180 -179 186 103 0 0 chrX 53783461 53783490 -123190650 + (CA)n Simple_repeat Simple_repeat 2 30 0 2497 202 102 15 chrX 53783490 53783684 -123190456 + L1MD2 LINE L1 6180 6356 -3 4466 155 54 36 chrX 53783770 53784561 -123189579 - L1MB7 LINE L1 -16 6168 5344 2005 140 3 10 chrX 53784561 53784861 -123189279 - AluJo SINE Alu -14 298 1 4466 155 54 36 chrX 53784861 53785421 -123188719 - L1MB7 LINE L1 -840 5344 4796 292 302 86 23 chrX 53785583 53785796 -123188344 + MIR SINE MIR 14 233 -29 395 358 72 54 chrX 53787870 53788312 -123185828 + L2 LINE L2 2809 3258 -14 201 292 56 22 chrX 53788306 53788395 -123185745 + L2 LINE L2 2955 3046 -226 * 1498 245 77 21 chrX 53788466 53789200 -123184940 - L2 LINE L2 -1 3312 2531 410 314 107 21 chrX 53789202 53789342 -123184798 + L2 LINE L2 3119 3270 -2 209 222 28 0 chrX 53792317 53792389 -123181751 + C-rich Low_complexity Low_complexity 4 77 0 1830 99 16 0 chrX 53793020 53793262 -123180878 + AluY SINE Alu 35 280 -31 207 0 0 0 chrX 53793266 53793289 -123180851 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 786 182 0 0 chrX 53793320 53793452 -123180688 + FLAM_C SINE Alu 1 132 -1 309 244 77 0 chrX 53794128 53794206 -123179934 + L2 LINE L2 3229 3312 -1 213 121 0 0 chrX 53794822 53794855 -123179285 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 1488 200 17 21 chrX 53794855 53795280 -123178860 - L1ME LINE L1 -707 5393 4974 1847 153 3 28 chrX 53795304 53795624 -123178516 - AluJo SINE Alu 0 312 1 268 213 0 13 chrX 53795624 53795699 -123178441 - L1ME LINE L1 -1089 4991 4918 1771 174 41 27 chrX 53795699 53796067 -123178073 - L1MA9 LINE L1 0 6312 5940 365 83 0 0 chrX 53796226 53796274 -123177866 - L1MA8 LINE L1 -196 6095 6048 1344 165 25 0 chrX 53796281 53796524 -123177616 - L1ME LINE L1 -3216 2864 2616 2376 144 57 32 chrX 53796525 53796961 -123177179 + Tigger1 DNA MER2_type 2 448 -1970 1095 221 50 47 chrX 53796972 53797144 -123176996 - L1ME LINE L1 -3681 2399 2229 1281 138 78 0 chrX 53797144 53797361 -123176779 - MER46A DNA MER2_type -1 235 2 2419 76 0 0 chrX 53797368 53797659 -123176481 - AluSg SINE Alu -9 301 11 1095 221 50 47 chrX 53797659 53797800 -123176340 - L1ME LINE L1 -3856 2224 2077 * 1227 140 12 73 chrX 53797798 53797977 -123176163 - L1MC/D LINE L1 -743 5403 5333 1789 142 7 65 chrX 53797977 53798287 -123175853 - AluJb SINE Alu -20 292 1 1227 140 12 73 chrX 53798287 53798439 -123175701 - L1MC/D LINE L1 -813 5333 5173 254 213 33 0 chrX 53798428 53798489 -123175651 - L1ME LINE L1 -4314 1947 1885 * 2500 48 0 48 chrX 53798512 53798828 -123175312 + AluY SINE Alu 1 301 -10 1207 258 40 9 chrX 53798831 53799292 -123174848 + MLT1F1 LTR MaLR 1 558 -9 2705 276 60 25 chrX 53799292 53800858 -123173282 - L1ME LINE L1 -4388 1873 198 1971 158 0 0 chrX 53800990 53801287 -123172853 - AluJb SINE Alu -14 298 2 21 0 0 0 chrX 53801292 53801313 -123172827 + AT_rich Low_complexity Low_complexity 1 21 0 266 233 47 23 chrX 53801322 53801408 -123172732 + MIR SINE MIR 104 191 -71 713 149 0 25 chrX 53801408 53801529 -123172611 + FLAM_C SINE Alu 1 118 -25 2468 63 3 3 chrX 53801626 53801926 -123172214 + AluSq SINE Alu 1 300 -13 196 309 162 0 chrX 53802041 53802109 -123172031 - L2 LINE L2 -27 3286 3208 722 210 18 30 chrX 53802125 53802292 -123171848 - L1ME LINE L1 -5900 170 6 219 150 0 0 chrX 53802699 53802739 -123171401 + (A)n Simple_repeat Simple_repeat 1 40 0 2240 111 0 0 chrX 53803216 53803514 -123170626 - AluSx SINE Alu -14 298 1 2427 71 3 0 chrX 53803640 53803935 -123170205 - AluSp SINE Alu -13 300 5 208 157 59 0 chrX 53804794 53804845 -123169295 + (CAAA)n Simple_repeat Simple_repeat 3 56 0 204 200 13 53 chrX 53805359 53805434 -123168706 + CT-rich Low_complexity Low_complexity 5 76 0 2143 91 40 0 chrX 53805452 53805727 -123168413 - AluSx SINE Alu -19 293 8 203 254 119 0 chrX 53806638 53806705 -123167435 - L3 LINE CR1 -30 1547 1473 207 330 42 42 chrX 53806705 53806823 -123167317 - L3 LINE CR1 -348 1229 1112 * 1181 270 92 47 chrX 53806820 53807641 -123166499 - L2 LINE L2 -6 3307 2447 230 243 14 95 chrX 53807854 53807928 -123166212 + Charlie4 DNA MER1_type 1890 1957 -4 2357 104 0 0 chrX 53807928 53808235 -123165905 + AluSc SINE Alu 1 307 -2 2143 130 13 0 chrX 53808677 53808976 -123165164 - AluSx SINE Alu -9 303 1 818 98 36 0 chrX 53809552 53809664 -123164476 + AluSp SINE Alu 1 116 -197 2487 66 3 3 chrX 53809664 53809969 -123164171 + AluY SINE Alu 1 305 -6 1724 170 28 3 chrX 53810061 53810349 -123163791 - AluJo SINE Alu -17 295 1 2019 142 7 3 chrX 53810540 53810835 -123163305 - AluJb SINE Alu -16 296 1 542 245 48 37 chrX 53810874 53811056 -123163084 + MIR SINE MIR 30 212 -50 259 258 97 40 chrX 53811081 53811205 -123162935 - MIR3 SINE MIR -74 134 4 2150 117 0 10 chrX 53811523 53811822 -123162318 - AluSg SINE Alu -14 296 1 613 311 139 18 chrX 53812603 53813043 -123161097 - L2 LINE L2 -12 3301 2809 691 303 100 8 chrX 53813073 53813433 -123160707 - L2 LINE L2 -705 2609 2217 2203 88 57 3 chrX 53813544 53813841 -123160299 - AluSq SINE Alu 0 313 1 795 231 130 15 chrX 53813910 53814383 -123159757 + L1ME4a LINE L1 5563 6118 -3 1896 123 36 36 chrX 53814385 53814687 -123159453 - AluJo SINE Alu -10 302 1 1863 156 0 10 chrX 53814738 53815033 -123159107 - AluSx SINE Alu -18 294 3 189 0 0 0 chrX 53815113 53815134 -123159006 + (T)n Simple_repeat Simple_repeat 1 21 0 404 247 174 11 chrX 53815272 53815450 -123158690 + L2 LINE L2 3107 3313 0 314 294 114 26 chrX 53815460 53815732 -123158408 + L2 LINE L2 2245 2540 -774 2051 124 10 3 chrX 53815878 53816199 -123157941 + AluSq SINE Alu 1 313 0 213 326 92 0 chrX 53816259 53816357 -123157783 - MIR SINE MIR 0 262 156 1562 119 18 0 chrX 53816357 53816583 -123157557 - Tigger5 DNA MER2_type 0 2323 2094 424 244 0 0 chrX 53816585 53816667 -123157473 - Tigger5 DNA MER2_type -2241 82 1 506 255 28 7 chrX 53816667 53816808 -123157332 - MIR SINE MIR -105 157 14 656 264 34 19 chrX 53816812 53817020 -123157120 - MIR SINE MIR 0 262 52 511 270 34 100 chrX 53817208 53817589 -123156551 + L2 LINE L2 2916 3271 -1 1517 169 49 3 chrX 53819916 53820224 -123153916 + MER33 DNA MER1_type 3 324 0 190 42 0 0 chrX 53820821 53820845 -123153295 - MER5B DNA MER1_type -129 49 26 1853 148 0 32 chrX 53821160 53821471 -123152669 - AluJb SINE Alu -11 301 1 2208 79 41 3 chrX 53821610 53821901 -123152239 + AluSx SINE Alu 1 302 -10 495 125 0 0 chrX 53822240 53822312 -123151828 + AluJ/FLAM SINE Alu 2 73 -239 205 195 0 0 chrX 53822313 53822354 -123151786 + MIR SINE MIR 65 105 -157 578 337 56 53 chrX 53822683 53823057 -123151083 + L2 LINE L2 2896 3270 -2 219 261 0 15 chrX 53823068 53823133 -123151007 - MIR SINE MIR 0 262 199 1095 172 104 70 chrX 53823133 53823573 -123150567 + LTR48 LTR ERV1 1 435 -160 1442 85 5 33 chrX 53823576 53823788 -123150352 + LTR26 LTR ERV1 1 206 -397 2956 193 142 11 chrX 53823978 53824709 -123149431 + LTR28 LTR ERV1 1 827 -193 291 279 7 64 chrX 53824794 53824934 -123149206 + MER52A LTR ERV1 1606 1737 -18 1953 117 64 0 chrX 53825770 53826079 -123148061 + AluSx SINE Alu 1 326 0 2184 125 0 3 chrX 53827050 53827363 -123146777 + AluSx SINE Alu 1 312 0 2076 95 95 0 chrX 53827546 53827829 -123146311 + AluSp SINE Alu 2 311 -2 2446 151 24 64 chrX 53828476 53828979 -123145161 + LTR19A LTR ERV1 1 483 -3 10300 59 9 81 chrX 53828979 53830472 -123143668 - SVA Other Other 0 1386 2 216 0 0 0 chrX 53830473 53830497 -123143643 + (GGGAGA)n Simple_repeat Simple_repeat 2 25 0 2237 111 6 22 chrX 53830505 53830820 -123143320 - AluSq SINE Alu -3 310 1 3146 89 0 0 chrX 53830905 53831309 -123142831 + MLT2A1 LTR ERVL 1 404 -40 351 59 78 0 chrX 53831337 53831388 -123142752 + MLT2A1 LTR ERVL 390 444 0 2716 114 21 3 chrX 53833459 53833845 -123140295 + LTR26 LTR ERV1 211 603 0 386 199 54 60 chrX 53833845 53834013 -123140127 + MER34 LTR ERV1 455 542 0 418 247 63 81 chrX 53834112 53834242 -123139898 + MER34-int LTR ERV1 90 221 -6110 2025 157 3 0 chrX 53834242 53834547 -123139593 - AluSx SINE Alu -6 306 1 418 247 63 81 chrX 53834547 53834687 -123139453 + MER34-int LTR ERV1 221 355 -5976 * 1271 219 60 47 chrX 53834657 53835182 -123138958 + LTR48-int LTR ERV1 355 2538 -4880 2458 106 40 93 chrX 53835182 53835236 -123138904 + MSTA LTR MaLR 1 56 -372 2280 110 3 0 chrX 53835236 53835545 -123138595 + AluSq SINE Alu 1 310 -3 2458 106 40 93 chrX 53835545 53835942 -123138198 + MSTA LTR MaLR 56 428 0 524 132 0 0 chrX 53835942 53836018 -123138122 - LTR51 LTR ERV1 -595 76 1 492 226 30 30 chrX 53836124 53836288 -123137852 + LTR48-int LTR ERV1 989 1152 -5179 300 183 73 0 chrX 53836462 53836544 -123137596 + LTR48-int LTR ERV1 1290 1377 -4954 489 199 51 70 chrX 53836746 53836902 -123137238 + LTR48-int LTR ERV1 1377 1529 -4802 249 87 196 0 chrX 53837432 53837478 -123136662 + MER67D LTR ERV1 105 159 -355 2123 100 43 7 chrX 53837577 53837878 -123136262 - AluSx SINE Alu 0 312 1 812 168 133 64 chrX 53837880 53837928 -123136212 + LTR48-int LTR ERV1 790 833 -4103 2341 101 3 3 chrX 53837928 53838234 -123135906 + AluSx SINE Alu 1 306 -6 812 168 133 64 chrX 53838234 53838468 -123135672 + LTR48-int LTR ERV1 833 1161 -3775 2169 116 0 0 chrX 53838488 53838780 -123135360 - AluSx SINE Alu -20 292 1 1034 118 0 0 chrX 53838780 53838915 -123135225 - AluSq/x SINE Alu -177 135 1 879 229 149 85 chrX 53838920 53838966 -123135174 + LTR48-int LTR ERV1 1200 1242 -3694 1406 197 17 27 chrX 53838966 53839265 -123134875 + AluJo SINE Alu 1 296 -16 879 229 149 85 chrX 53839265 53839541 -123134599 + LTR48-int LTR ERV1 1242 1499 -3437 2351 101 3 0 chrX 53839541 53839839 -123134301 + AluSx SINE Alu 3 301 -11 879 229 149 85 chrX 53839839 53840346 -123133794 + LTR48-int LTR ERV1 1499 2096 -2840 1578 143 82 90 chrX 53840346 53840551 -123133589 - THE1C LTR MaLR 0 375 173 1962 138 20 7 chrX 53840551 53840847 -123133293 + AluSx SINE Alu 1 300 -12 1578 143 82 90 chrX 53840847 53841018 -123133122 - THE1C LTR MaLR -202 173 2 879 229 149 85 chrX 53841018 53841096 -123133044 + LTR48-int LTR ERV1 2096 2168 -2768 2242 158 15 25 chrX 53841152 53841545 -123132595 - LTR10E LTR ERV1 -31 602 214 298 222 25 12 chrX 53841619 53841700 -123132440 - LTR10E LTR ERV1 -551 82 1 639 207 42 81 chrX 53841781 53842131 -123132009 + LTR48-int LTR ERV1 2392 4497 -2237 3933 172 47 30 chrX 53842163 53842392 -123131748 + LTR48-int LTR ERV1 4608 4832 -1499 2321 91 3 3 chrX 53842392 53842688 -123131452 + AluSx SINE Alu 1 296 -16 3933 172 47 30 chrX 53842688 53843306 -123130834 + LTR48-int LTR ERV1 4832 5446 -885 1302 97 17 0 chrX 53843307 53843482 -123130658 - AluSg/x SINE Alu -3 309 132 2659 157 34 90 chrX 53843482 53844075 -123130065 + LTR48-int LTR ERV1 4135 4759 -1552 2329 89 0 46 chrX 53844075 53844400 -123129740 + AluSx SINE Alu 1 310 -2 2659 157 34 90 chrX 53844400 53844590 -123129550 + LTR48-int LTR ERV1 4759 6152 -159 609 214 125 47 chrX 53844682 53845247 -123128893 + LTR48 LTR ERV1 1 783 -4 2371 96 0 13 chrX 53845282 53845596 -123128544 + AluSq SINE Alu 1 310 -3 1326 214 138 12 chrX 53845689 53846030 -123128110 - MSTD LTR MaLR -12 384 1 451 143 93 107 chrX 53846035 53846175 -123127965 - MIR SINE MIR -122 140 3 302 268 94 39 chrX 53846342 53846469 -123127671 - L2 LINE L2 -3 3269 3136 1667 148 7 11 chrX 53846573 53846843 -123127297 - AluJo SINE Alu -43 269 1 447 208 89 10 chrX 53846940 53847041 -123127099 - L2 LINE L2 -1 3312 3204 245 247 62 0 chrX 53847177 53847258 -123126882 - MER113 DNA MER1_type? -5 516 431 218 279 0 0 chrX 53847718 53847779 -123126361 - MIR SINE MIR -14 248 188 318 208 104 0 chrX 53847914 53847991 -123126149 + MIR3 SINE MIR 81 165 -43 353 252 171 0 chrX 53848212 53848323 -123125817 - L1MD1 LINE L1 -14 6228 6099 1578 169 11 0 chrX 53848329 53848590 -123125550 + AluJb SINE Alu 1 264 -48 29 0 0 0 chrX 53848598 53848627 -123125513 + AT_rich Low_complexity Low_complexity 1 29 0 28856 25 0 0 chrX 53848627 53852780 -123121360 - L1PA3 LINE L1 0 6155 2004 5039 28 0 0 chrX 53852761 53853377 -123120763 - L1P LINE L1 -2672 3474 2859 * 2729 167 63 2 chrX 53853425 53853481 -123120659 - L1MD2 LINE L1 -152 6207 6156 255 61 0 0 chrX 53853481 53853514 -123120626 + (TG)n Simple_repeat Simple_repeat 2 34 0 2729 167 63 2 chrX 53853514 53853961 -123120179 - L1MD2 LINE L1 -203 6156 5673 1056 227 7 19 chrX 53853969 53854238 -123119902 - L1MD2 LINE L1 -964 5182 4917 215 56 56 0 chrX 53854375 53854411 -123119729 + A-rich Low_complexity Low_complexity 2 39 0 632 176 0 23 chrX 53854429 53854560 -123119580 - L1MD2 LINE L1 -1238 4908 4781 206 200 300 11 chrX 53854569 53854659 -123119481 + MIR SINE MIR 21 136 -126 * 1133 251 129 18 chrX 53854635 53855146 -123118994 + L2 LINE L2 2739 3312 -1 261 196 0 0 chrX 53855148 53855204 -123118936 + (TGAA)n Simple_repeat Simple_repeat 3 58 0 2251 115 0 0 chrX 53855468 53855764 -123118376 - AluSx SINE Alu -14 298 3 518 272 20 45 chrX 53856029 53856231 -123117909 + MIR SINE MIR 47 243 -19 196 317 94 45 chrX 53856349 53856748 -123117392 - L2 LINE L2 -212 3060 2644 2271 96 0 23 chrX 53856904 53857243 -123116897 - AluSx SINE Alu 0 312 1 1173 71 0 0 chrX 53857983 53858124 -123116016 + AluSq/x SINE Alu 1 141 -171 2339 98 0 7 chrX 53858125 53858431 -123115709 + AluSx SINE Alu 1 304 -8 507 260 78 7 chrX 53858486 53858640 -123115500 - MIR SINE MIR -49 213 49 2418 84 3 13 chrX 53858644 53858952 -123115188 - AluSp SINE Alu -8 305 1 398 226 8 57 chrX 53859278 53859402 -123114738 + MIR3 SINE MIR 90 207 -1 250 240 240 22 chrX 53859513 53859647 -123114493 + MIR3 SINE MIR 14 172 -67 425 296 169 34 chrX 53861985 53862252 -123111888 - L3 LINE CR1 -98 1479 1177 385 200 317 0 chrX 53862274 53862394 -123111746 + MIR SINE MIR 105 262 0 207 311 0 0 chrX 53862461 53862522 -123111618 + L2 LINE L2 3200 3260 -12 327 231 144 0 chrX 53862531 53862635 -123111505 - L3 LINE CR1 -402 1175 1057 355 175 22 15 chrX 53863055 53863192 -123110948 + GA-rich Low_complexity Low_complexity 1 138 0 437 219 9 0 chrX 53863250 53863364 -123110776 + GA-rich Low_complexity Low_complexity 2 116 0 487 256 119 6 chrX 53864901 53865077 -123109063 - MIR SINE MIR -10 252 57 1955 115 0 81 chrX 53865308 53865434 -123108706 - AluJb SINE Alu -9 303 168 2207 109 0 0 chrX 53865434 53865719 -123108421 - AluSx SINE Alu -16 296 12 1955 115 0 81 chrX 53865719 53865915 -123108225 - AluJb SINE Alu -144 168 7 833 92 84 15 chrX 53866572 53866703 -123107437 + FLAM_C SINE Alu 1 140 -3 2234 112 0 3 chrX 53866707 53867003 -123107137 + AluJb SINE Alu 1 295 -17 2178 90 11 7 chrX 53867097 53867375 -123106765 - AluSg SINE Alu -31 279 1 29 28 0 0 chrX 53867375 53867411 -123106729 + AT_rich Low_complexity Low_complexity 1 36 0 403 227 288 0 chrX 53867676 53867808 -123106332 + MER5A DNA MER1_type 19 188 -1 608 201 29 94 chrX 53868248 53868492 -123105648 - L3 LINE CR1 -91 1486 1259 1328 112 147 84 chrX 53868516 53868801 -123105339 - MER54B LTR ERVL 0 793 491 2368 91 3 0 chrX 53869076 53869385 -123104755 + AluSg SINE Alu 1 310 0 348 238 0 0 chrX 53869434 53869518 -123104622 - L3 LINE CR1 -348 1229 1146 907 224 95 17 chrX 53870189 53870421 -123103719 - MIR SINE MIR -2 260 11 203 257 0 57 chrX 53870444 53870514 -123103626 + MER5A DNA MER1_type 14 79 -110 335 283 17 17 chrX 53870598 53870718 -123103422 - MER5A DNA MER1_type -7 182 63 720 226 24 0 chrX 53871128 53871296 -123102844 + MIR SINE MIR 89 260 -2 458 236 6 54 chrX 53871415 53871587 -123102553 - L1ME3A LINE L1 -1 6169 6006 38 39 0 0 chrX 53872945 53872997 -123101143 + AT_rich Low_complexity Low_complexity 1 52 0 345 62 0 0 chrX 53873080 53873128 -123101012 + (TC)n Simple_repeat Simple_repeat 1 48 0 222 37 0 0 chrX 53873135 53873162 -123100978 + (CA)n Simple_repeat Simple_repeat 1 27 0 1735 164 0 35 chrX 53873299 53873586 -123100554 - AluJb SINE Alu -35 277 1 2036 110 10 7 chrX 53874494 53874784 -123099356 + AluSx SINE Alu 3 293 -19 4685 65 3 5 chrX 53874858 53875443 -123098697 + LTR10C LTR ERV1 1 584 -7 289 301 158 6 chrX 53875478 53875661 -123098479 - MLT1K LTR MaLR -377 211 1 187 291 68 58 chrX 53876557 53876660 -123097480 - L3 LINE CR1 -141 1436 1333 2254 150 26 26 chrX 53877664 53877878 -123096262 + L1MB3 LINE L1 5762 5978 -205 2434 87 0 0 chrX 53877878 53878176 -123095964 + AluSg SINE Alu 1 298 -12 2254 150 26 26 chrX 53878176 53878382 -123095758 + L1MB3 LINE L1 5977 6182 -1 2287 110 0 7 chrX 53878394 53878693 -123095447 + AluSx SINE Alu 1 297 -15 310 227 41 10 chrX 53878790 53878887 -123095253 - L1ME3A LINE L1 -2019 5789 5690 5042 58 21 36 chrX 53878909 53879140 -123095000 - PABL_A LTR ERV1 0 660 427 2207 103 3 0 chrX 53879140 53879430 -123094710 - AluSg SINE Alu -17 293 3 5042 58 21 36 chrX 53879430 53879689 -123094451 - PABL_A LTR ERV1 -233 427 180 2285 99 0 10 chrX 53879689 53879991 -123094149 + AluSx SINE Alu 1 299 -13 5042 58 21 36 chrX 53879991 53880169 -123093971 - PABL_A LTR ERV1 -480 180 1 695 276 90 22 chrX 53880349 53880617 -123093523 - L1ME3A LINE L1 -2125 5683 5398 315 323 53 50 chrX 53881088 53881388 -123092752 + L1ME4a LINE L1 4865 5165 -981 1862 122 82 0 chrX 53881448 53881718 -123092422 - AluSg SINE Alu -18 292 1 2242 119 3 3 chrX 53881795 53882107 -123092033 + AluSx SINE Alu 1 312 0 1610 156 4 14 chrX 53882192 53882467 -123091673 + L1PA16 LINE L1 5895 6166 0 303 284 125 0 chrX 53882494 53882582 -123091558 + L1ME4a LINE L1 5373 5471 -2337 722 234 66 12 chrX 53882682 53882938 -123091202 + L1ME4a LINE L1 5614 5883 -238 684 256 46 63 chrX 53883259 53883310 -123090830 - MIR SINE MIR 0 262 212 2223 121 3 0 chrX 53883310 53883615 -123090525 - AluSq SINE Alu -5 308 3 684 256 46 63 chrX 53883615 53883801 -123090339 - MIR SINE MIR -50 212 29 1073 153 11 16 chrX 53888680 53888854 -123085286 - AluSg/x SINE Alu -3 307 133 2308 66 17 0 chrX 53888854 53889143 -123084997 - AluSg SINE Alu -16 294 1 1073 153 11 16 chrX 53889143 53889158 -123084982 - AluSg/x SINE Alu -177 133 119 22 0 0 0 chrX 53889350 53889372 -123084768 + GC_rich Low_complexity Low_complexity 1 22 0 203 213 21 0 chrX 53889383 53889430 -123084710 + A-rich Low_complexity Low_complexity 2 49 0 2064 92 33 4 chrX 53891007 53891278 -123082862 - AluSx SINE Alu -33 279 1 470 134 257 24 chrX 53891283 53891407 -123082733 - L1MC/D LINE L1 -880 5873 5707 1084 171 142 44 chrX 53891407 53891613 -123082527 - AluJb SINE Alu -1 301 60 1733 149 0 4 chrX 53891613 53891874 -123082266 + AluSx SINE Alu 2 261 -51 1084 171 142 44 chrX 53891874 53891941 -123082199 - AluJb SINE Alu -242 60 1 470 134 257 24 chrX 53891941 53891964 -123082176 - L1MC/D LINE L1 -1046 5707 5691 279 140 0 0 chrX 53891964 53892014 -123082126 + (TC)n Simple_repeat Simple_repeat 2 51 0 2100 118 0 0 chrX 53892041 53892320 -123081820 - AluSx SINE Alu -9 303 25 1117 90 0 14 chrX 53892351 53892496 -123081644 - FLAM_C SINE Alu 0 143 1 5734 238 30 20 chrX 53892497 53894282 -123079858 - L1MC/D LINE L1 -1540 5000 3198 1441 121 24 25 chrX 53894282 53894638 -123079502 + MSTA LTR MaLR 1 394 -34 923 105 30 0 chrX 53894638 53894771 -123079369 - AluSg/x SINE Alu -8 302 166 801 173 0 0 chrX 53894773 53894906 -123079234 - AluJo/FLAM SINE Alu -169 133 1 1355 252 10 15 chrX 53894954 53895363 -123078777 - L1MC/D LINE L1 -3339 3201 2795 1921 175 72 12 chrX 53895363 53895763 -123078377 - L1MC/D LINE L1 -6086 454 31 537 224 41 14 chrX 53897218 53897365 -123076775 - L2 LINE L2 -2 3311 3161 2331 48 0 0 chrX 53897367 53897636 -123076504 + AluY SINE Alu 38 306 -5 849 143 15 84 chrX 53898458 53898661 -123075479 + MER53 DNA DNA 1 189 0 193 266 0 89 chrX 53898675 53898754 -123075386 + L3 LINE CR1 1263 1334 -243 214 308 173 0 chrX 53899311 53899415 -123074725 - MIR SINE MIR -60 202 81 260 203 106 73 chrX 53899441 53899564 -123074576 - L2 LINE L2 -5 3267 3141 1096 254 160 59 chrX 53899890 53900662 -123073478 + L2 LINE L2 2469 3302 -11 2177 119 0 3 chrX 53900925 53901219 -123072921 - AluSx SINE Alu -8 304 12 2076 85 4 4 chrX 53901222 53901481 -123072659 - AluSp SINE Alu -19 294 36 283 149 70 18 chrX 53901617 53901731 -123072409 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 1051 175 0 0 chrX 53901865 53902031 -123072109 - FRAM SINE Alu -10 166 1 832 251 40 16 chrX 53902083 53902334 -123071806 - L1ME2 LINE L1 0 6164 5908 411 259 28 9 chrX 53903057 53903165 -123070975 + MER81 DNA DNA 1 110 -4 221 329 0 0 chrX 53903210 53903286 -123070854 + (TG)n Simple_repeat Simple_repeat 1 76 0 420 276 0 0 chrX 53903790 53903888 -123070252 + MIR SINE MIR 47 144 -118 565 269 35 12 chrX 53903899 53904070 -123070070 - MLT1I LTR MaLR 0 409 235 351 253 47 27 chrX 53904170 53904320 -123069820 - L1ME2 LINE L1 -2350 5458 5306 224 307 93 27 chrX 53904320 53904470 -123069670 - L2 LINE L2 -251 3021 2862 243 163 0 0 chrX 53904472 53904515 -123069625 + L2 LINE L2 3271 3313 0 * 655 291 98 34 chrX 53904511 53904899 -123069241 - L2 LINE L2 -444 2870 2458 333 200 158 32 chrX 53905252 53905347 -123068793 - MIR SINE MIR -100 162 56 1081 223 129 11 chrX 53905529 53905901 -123068239 - HAL1 LINE L1 -85 2422 2007 2194 128 3 0 chrX 53906181 53906478 -123067662 + AluSx SINE Alu 1 298 -14 280 254 100 96 chrX 53906650 53906870 -123067270 - HAL1 LINE L1 -463 2044 1824 681 236 7 0 chrX 53906874 53907022 -123067118 + MER96 DNA MER1_type? 27 175 0 1022 206 5 0 chrX 53907029 53907228 -123066912 - HAL1 LINE L1 -722 1785 1586 883 289 32 56 chrX 53907316 53907725 -123066415 - HAL1 LINE L1 -2107 400 2 361 267 44 0 chrX 53909036 53909126 -123065014 + MER91C DNA MER1_type 46 139 -1 26 30 0 0 chrX 53909976 53910009 -123064131 + AT_rich Low_complexity Low_complexity 1 33 0 410 291 76 41 chrX 53911545 53911717 -123062423 + MIR SINE MIR 28 205 -57 307 273 0 68 chrX 53912742 53912830 -123061310 + MIR SINE MIR 71 153 -55 1651 75 26 31 chrX 53912996 53913224 -123060916 - MER30 DNA MER1_type 0 230 4 468 231 0 50 chrX 53914006 53914127 -123060013 + MIR3 SINE MIR 89 203 -5 191 245 108 39 chrX 53915249 53915351 -123058789 + MIR SINE MIR 14 122 -140 237 258 16 16 chrX 53916222 53916284 -123057856 - L3 LINE CR1 -3 1574 1513 216 0 0 0 chrX 53919151 53919175 -123054965 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2281 108 0 13 chrX 53920598 53920905 -123053235 - AluSx SINE Alu -5 307 5 506 240 85 30 chrX 53921557 53921757 -123052383 + MIR SINE MIR 7 217 -45 221 210 0 8 chrX 53921802 53921859 -123052281 + MIR SINE MIR 100 151 -57 268 176 20 0 chrX 53922111 53922162 -123051978 + MIR3 SINE MIR 151 202 -6 561 231 35 35 chrX 53922594 53922737 -123051403 + MIR SINE MIR 64 206 -56 257 276 143 0 chrX 53923737 53923835 -123050305 + L2 LINE L2 3114 3225 -88 2416 79 0 0 chrX 53925053 53925345 -123048795 - AluSx SINE Alu -20 292 1 254 243 68 0 chrX 53925653 53925727 -123048413 - L2 LINE L2 -194 3078 3000 282 306 13 26 chrX 53925959 53926100 -123048040 + GA-rich Low_complexity Low_complexity 1 229 0 723 279 88 36 chrX 53926137 53926442 -123047698 - L3b LINE CR1 -114 1469 1149 560 309 51 11 chrX 53927238 53927413 -123046727 + MIR3 SINE MIR 16 197 -11 180 77 0 0 chrX 53928104 53928130 -123046010 + (TGAG)n Simple_repeat Simple_repeat 3 28 0 1241 111 0 0 chrX 53929245 53929407 -123044733 + AluSq SINE Alu 150 311 -2 2400 82 3 0 chrX 53930250 53930575 -123043565 + AluY SINE Alu 1 326 0 192 77 0 0 chrX 53931208 53931234 -123042906 + (TCTCC)n Simple_repeat Simple_repeat 4 29 0 213 154 0 0 chrX 53931894 53931933 -123042207 + (CATA)n Simple_repeat Simple_repeat 4 42 0 464 269 82 103 chrX 53932059 53932297 -123041843 - L1MB8 LINE L1 -281 5843 5600 218 216 45 11 chrX 53932211 53932299 -123041841 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 * 2578 47 0 7 chrX 53932312 53932610 -123041530 - AluY SINE Alu -15 296 1 309 397 34 15 chrX 53932709 53932913 -123041227 - L1MB8 LINE L1 -996 5150 4943 16624 214 23 21 chrX 53932985 53937292 -123036848 - L1PB3 LINE L1 -3 7589 3289 2315 109 0 0 chrX 53937292 53937595 -123036545 - AluSx SINE Alu -9 303 1 16624 214 23 21 chrX 53937595 53940164 -123033976 - L1PB3 LINE L1 -4303 3289 725 193 258 216 10 chrX 53940915 53941012 -123033128 + MIR3 SINE MIR 49 165 -43 10654 198 55 36 chrX 53941062 53941338 -123032802 + L1MCa LINE L1 1705 1974 -4452 1671 102 0 0 chrX 53941338 53941553 -123032587 + AluSg/x SINE Alu 84 298 -14 10654 198 55 36 chrX 53941553 53941881 -123032259 + L1MCa LINE L1 1974 2294 -4132 2190 124 39 33 chrX 53941881 53942243 -123031897 + THE1B LTR MaLR 1 364 0 10654 198 55 36 chrX 53942243 53942999 -123031141 + L1MCa LINE L1 2294 3034 -3392 2102 130 0 7 chrX 53942999 53943338 -123030802 + AluSx SINE Alu 1 312 0 10654 198 55 36 chrX 53943338 53944073 -123030067 + L1MCa LINE L1 3034 3754 -2672 710 122 9 0 chrX 53944073 53944180 -123029960 + L1PA16 LINE L1 6050 6157 -9 10654 198 55 36 chrX 53944180 53945234 -123028906 + L1MCa LINE L1 3754 4944 -1482 2385 139 19 0 chrX 53945234 53945602 -123028538 - THE1C LTR MaLR 0 375 1 10654 198 55 36 chrX 53945602 53946295 -123027845 + L1MCa LINE L1 4944 5623 -803 4155 129 11 6 chrX 53946294 53947006 -123027134 + L1MC2 LINE L1 5283 5998 -346 * 298 163 50 75 chrX 53946991 53947071 -123027069 + L1MC2 LINE L1 6242 6319 -25 * 25 0 0 0 chrX 53947078 53947103 -123027037 + AT_rich Low_complexity Low_complexity 1 25 0 484 320 191 30 chrX 53947195 53947498 -123026642 + L2 LINE L2 2920 3271 -1 24 0 0 0 chrX 53947713 53947737 -123026403 + AT_rich Low_complexity Low_complexity 1 24 0 1406 146 0 23 chrX 53947780 53948000 -123026140 - AluJo SINE Alu -20 292 78 533 233 38 13 chrX 53948981 53949140 -123025000 + MER103 DNA DNA 2 164 -2 801 226 63 50 chrX 53949217 53949456 -123024684 + MIR SINE MIR 20 261 -1 421 250 29 52 chrX 53949590 53949726 -123024414 + MIR3 SINE MIR 35 167 -41 491 208 20 0 chrX 53950079 53950180 -123023960 - MIR3 SINE MIR -42 166 64 208 351 53 11 chrX 53950565 53950659 -123023481 + L2 LINE L2 2112 2209 -1105 881 222 0 0 chrX 53950769 53950945 -123023195 - MER5B DNA MER1_type -1 177 2 663 242 68 41 chrX 53951956 53952175 -123021965 + MIR SINE MIR 12 236 -26 1015 297 79 13 chrX 53952505 53953125 -123021015 - L1M4 LINE L1 -1897 4249 3589 2295 121 0 10 chrX 53953193 53953507 -123020633 - AluSq SINE Alu -2 311 1 2121 133 14 11 chrX 53953869 53954223 -123019917 - THE1A LTR MaLR 0 355 1 12261 80 6 3 chrX 53954223 53955798 -123018342 - THE1A-int LTR MaLR 0 1580 1 1782 120 76 38 chrX 53955798 53956140 -123018000 - THE1A LTR MaLR 0 355 1 239 87 43 0 chrX 53957035 53957081 -123017059 + A-rich Low_complexity Low_complexity 5 52 0 469 241 102 54 chrX 53958221 53958387 -123015753 + MER5A DNA MER1_type 11 184 -5 425 302 121 11 chrX 53958520 53958702 -123015438 - MIR SINE MIR -56 206 5 513 309 89 25 chrX 53959221 53959457 -123014683 + MIR SINE MIR 2 252 -10 240 82 49 33 chrX 53959617 53959678 -123014462 + T-rich Low_complexity Low_complexity 4 65 0 483 239 48 48 chrX 53959761 53959991 -123014149 + L1ME3A LINE L1 4883 5112 -1034 958 288 41 23 chrX 53960032 53960470 -123013670 + L1ME3A LINE L1 5492 5937 -233 965 239 43 22 chrX 53960509 53960785 -123013355 + L1MDa LINE L1 61 342 -6198 310 313 42 31 chrX 53960982 53961078 -123013062 + L1MDa LINE L1 329 425 -6118 1974 225 58 13 chrX 53961357 53961962 -123012178 + L1MDa LINE L1 835 1466 -5077 1804 212 53 53 chrX 53961945 53962909 -123011231 + L1MDa LINE L1 135 1253 -5287 * 1589 184 121 90 chrX 53962917 53963926 -123010214 - L1MDb LINE L1 -4983 1557 564 180 0 0 0 chrX 53963938 53963958 -123010182 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 2398 78 0 0 chrX 53963968 53964264 -123009876 - AluSx SINE Alu -16 296 1 2857 101 25 2 chrX 53964288 53964722 -123009418 - L1MA2 LINE L1 0 6304 5861 893 261 76 25 chrX 53965112 53965507 -123008633 - L1MDb LINE L1 -6123 417 3 43 0 0 0 chrX 53965507 53965550 -123008590 + AT_rich Low_complexity Low_complexity 1 43 0 22280 23 0 0 chrX 53965550 53968959 -123005181 - L1PA2 LINE L1 0 6155 2747 9916 27 0 0 chrX 53968962 53970198 -123003942 + L1PA2 LINE L1 1533 2768 -3378 835 240 97 9 chrX 53970951 53971168 -123002972 + MIR SINE MIR 14 249 -13 264 258 164 57 chrX 53971997 53972156 -123001984 + MIR SINE MIR 84 259 -3 4148 189 35 4 chrX 53972909 53973954 -123000186 + L1MB4 LINE L1 5108 6180 0 1855 143 26 9 chrX 53973954 53974299 -122999841 + L1MB8 LINE L1 5814 6169 -9 1878 154 0 57 chrX 53974305 53974636 -122999504 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 53974643 53974678 -122999462 + AT_rich Low_complexity Low_complexity 1 35 0 1008 133 4 34 chrX 53976918 53977152 -122996988 - Charlie5 DNA MER1_type -10 2602 2376 5578 121 27 50 chrX 53977202 53977348 -122996792 - L1PA16 LINE L1 -9 6157 6009 195 42 0 0 chrX 53977348 53977372 -122996768 + (TCCC)n Simple_repeat Simple_repeat 2 25 0 5578 121 27 50 chrX 53977372 53978554 -122995586 - L1PA16 LINE L1 -157 6009 4873 23 0 0 0 chrX 53978795 53978818 -122995322 + AT_rich Low_complexity Low_complexity 1 23 0 533 253 14 6 chrX 53978987 53979157 -122994983 - L1ME3A LINE L1 -293 5877 5722 225 83 0 0 chrX 53979810 53979846 -122994294 + (CTTAG)n Simple_repeat Simple_repeat 1 36 0 453 287 76 32 chrX 53980109 53980266 -122993874 - MIR SINE MIR -73 189 26 195 254 51 17 chrX 53982245 53982304 -122991836 - MIR SINE MIR -46 216 156 610 258 72 10 chrX 53982429 53982623 -122991517 - MIR SINE MIR -2 260 55 1690 162 26 29 chrX 53982706 53983015 -122991125 - AluJo SINE Alu -4 308 1 226 338 5 121 chrX 53984614 53984821 -122989319 + L2 LINE L2 3071 3253 -19 218 330 142 9 chrX 53984853 53984959 -122989181 + L2 LINE L2 1789 1908 -1406 1095 233 52 62 chrX 53984964 53985269 -122988871 + MLT1K LTR MaLR 279 580 -8 573 335 174 5 chrX 53985273 53985658 -122988482 + L2 LINE L2 2223 2672 -642 258 206 41 0 chrX 53985841 53985914 -122988226 + (TA)n Simple_repeat Simple_repeat 1 76 0 454 292 64 57 chrX 53986102 53986247 -122987893 - L1MC/D LINE L1 -2002 5806 5657 2365 68 20 0 chrX 53986247 53986540 -122987600 - AluSx SINE Alu -13 299 1 454 292 64 57 chrX 53986540 53986675 -122987465 - L1MC/D LINE L1 -2151 5657 5524 1803 182 0 0 chrX 53986769 53987071 -122987069 - AluJo SINE Alu -8 304 3 22 0 0 0 chrX 53987073 53987095 -122987045 + AT_rich Low_complexity Low_complexity 1 22 0 348 259 132 17 chrX 53987217 53987391 -122986749 - L1MC/D LINE L1 -2037 5771 5578 747 336 67 50 chrX 53987413 53987937 -122986203 + L2 LINE L2 2743 3272 0 466 203 94 78 chrX 53988589 53988717 -122985423 - MIR3 SINE MIR -49 159 30 2073 117 3 0 chrX 53990107 53990409 -122983731 + AluSx SINE Alu 1 303 0 589 255 49 44 chrX 53990417 53990621 -122983519 - MIR SINE MIR -56 206 2 368 330 89 58 chrX 53991295 53991553 -122982587 - L3 LINE CR1 -1103 474 209 1219 117 0 0 chrX 53991563 53991726 -122982414 + AluSq SINE Alu 1 163 -150 1528 130 4 32 chrX 53991791 53992038 -122982102 - AluSg/x SINE Alu -1 311 72 2501 239 78 12 chrX 53992336 53993191 -122980949 + L2 LINE L2 2302 3220 -93 262 170 19 19 chrX 53993191 53993244 -122980896 - L2 LINE L2 -17 3296 3244 190 352 80 0 chrX 53994845 53994933 -122979207 - L2 LINE L2 -29 3284 3190 2043 103 55 10 chrX 53995331 53995622 -122978518 - AluSx SINE Alu -4 308 5 2380 77 13 10 chrX 53996192 53996504 -122977636 + AluSq SINE Alu 1 313 0 414 57 0 0 chrX 53996511 53996564 -122977576 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 698 223 199 0 chrX 53996955 53997161 -122976979 + MIR SINE MIR 16 262 0 23 0 0 0 chrX 53997425 53997448 -122976692 + AT_rich Low_complexity Low_complexity 1 23 0 311 85 68 68 chrX 53997496 53997555 -122976585 - MER116 DNA Mariner -17 63 5 2582 84 3 8 chrX 53997810 53998169 -122975971 + L1PA12 LINE L1 5802 6158 -10 371 308 65 43 chrX 53998422 53998701 -122975439 - L2 LINE L2 -182 3090 2806 2942 204 40 34 chrX 53998774 53999504 -122974636 - L1ME2 LINE L1 -1 6163 5430 2050 128 51 31 chrX 54000269 54000622 -122973518 + THE1B LTR MaLR 5 364 0 282 275 73 37 chrX 54001271 54001380 -122972760 + L2 LINE L2 3199 3311 -2 732 230 34 17 chrX 54001386 54001564 -122972576 - MLT1A1 LTR MaLR 0 365 185 27 0 0 0 chrX 54001639 54001666 -122972474 + AT_rich Low_complexity Low_complexity 1 27 0 7864 14 2 0 chrX 54001733 54002988 -122971152 - L1PA3 LINE L1 0 6155 4900 494 197 110 16 chrX 54002998 54003130 -122971010 - MSTC LTR MaLR -217 148 3 508 266 73 23 chrX 54003288 54003465 -122970675 - MER5A DNA MER1_type 0 189 4 24413 138 20 8 chrX 54007572 54012006 -122962134 + L1MA3 LINE L1 16 4567 -3072 1200 128 0 0 chrX 54012006 54012194 -122961946 + L1MA2 LINE L1 6117 6304 0 24413 138 20 8 chrX 54012194 54014553 -122959587 + L1MA3 LINE L1 4567 6896 -743 221 190 0 17 chrX 54015851 54015909 -122958231 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 220 120 40 0 chrX 54016791 54016841 -122957299 + (TA)n Simple_repeat Simple_repeat 2 53 0 2161 88 0 7 chrX 54017365 54017660 -122956480 + L1MA3 LINE L1 6896 7188 -536 1208 84 0 113 chrX 54017761 54018000 -122956140 + L1MA3 LINE L1 7513 7724 0 945 211 30 15 chrX 54018553 54018819 -122955321 + HAL1 LINE L1 1394 1663 -844 367 306 141 27 chrX 54018827 54018937 -122955203 + HAL1 LINE L1 1834 1930 -577 2174 90 14 3 chrX 54018937 54019226 -122954914 - AluSg SINE Alu -18 292 1 367 306 141 27 chrX 54019226 54019412 -122954728 + HAL1 LINE L1 1930 2164 -343 269 249 68 107 chrX 54019471 54019648 -122954492 + HAL1b LINE L1 746 915 -433 318 256 130 60 chrX 54019739 54019954 -122954186 + HAL1 LINE L1 2245 2474 -33 270 239 104 15 chrX 54020262 54020396 -122953744 - L1MA9 LINE L1 0 6312 6167 * 3427 167 60 82 chrX 54020328 54021097 -122953043 - L1ME1 LINE L1 -77 6089 5340 667 231 23 0 chrX 54021097 54021227 -122952913 - FLAM_A SINE Alu 0 133 1 3427 167 60 82 chrX 54021227 54021368 -122952772 - L1ME1 LINE L1 -826 5340 5197 1257 186 59 18 chrX 54021376 54022253 -122951887 - L1ME1 LINE L1 -1254 4892 3847 237 324 102 67 chrX 54022453 54022678 -122951462 - L2 LINE L2 -20 3252 3020 432 0 0 0 chrX 54022873 54022921 -122951219 + (CA)n Simple_repeat Simple_repeat 1 48 0 228 371 30 15 chrX 54024377 54024509 -122949631 - L2 LINE L2 -206 3066 2933 369 250 194 0 chrX 54024543 54024651 -122949489 + MIR SINE MIR 130 258 -4 25099 104 8 12 chrX 54024873 54029480 -122944660 + L1PA8A LINE L1 1546 6126 -5 2707 140 104 76 chrX 54030091 54031657 -122942483 + L1MC3 LINE L1 5405 6925 -860 315 0 0 0 chrX 54031657 54031692 -122942448 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2707 140 104 76 chrX 54031692 54031742 -122942398 + L1MC3 LINE L1 6925 6972 -813 329 256 11 11 chrX 54031742 54031832 -122942308 + MLT1F1 LTR MaLR 35 124 -443 2707 140 104 76 chrX 54031832 54032424 -122941716 + L1MC3 LINE L1 6972 7776 -9 28 48 0 0 chrX 54032424 54032466 -122941674 + AT_rich Low_complexity Low_complexity 1 42 0 407 333 0 0 chrX 54033414 54033549 -122940591 - L3b LINE CR1 -346 1237 1103 2257 121 0 0 chrX 54034181 54034486 -122939654 + AluSx SINE Alu 1 305 -7 26 30 0 0 chrX 54034858 54034891 -122939249 + AT_rich Low_complexity Low_complexity 1 33 0 2237 100 7 7 chrX 54035400 54035701 -122938439 + AluSx SINE Alu 1 301 -11 2605 52 0 10 chrX 54035931 54036241 -122937899 + AluY SINE Alu 1 307 -4 332 234 85 21 chrX 54036446 54036540 -122937600 - MIR SINE MIR -54 208 109 366 295 78 0 chrX 54036619 54036748 -122937392 - MIR3 SINE MIR -25 183 45 620 254 11 48 chrX 54036825 54037014 -122937126 + L2 LINE L2 3129 3310 -3 2216 75 35 0 chrX 54037031 54037313 -122936827 - AluSp SINE Alu -21 292 1 210 261 22 80 chrX 54037732 54037870 -122936270 + L3b LINE CR1 1102 1231 -352 1640 106 19 4 chrX 54037889 54038154 -122935986 + L1MA5A LINE L1 6029 6297 0 443 323 23 0 chrX 54038176 54038309 -122935831 + MIR SINE MIR 7 142 -120 13987 130 29 11 chrX 54038412 54039569 -122934571 + Tigger1 DNA MER2_type 28 1162 -1256 2188 142 3 0 chrX 54039569 54039878 -122934262 + AluSx SINE Alu 3 312 0 13987 130 29 11 chrX 54039878 54041068 -122933072 + Tigger1 DNA MER2_type 1162 2418 0 1990 238 80 61 chrX 54041069 54042206 -122931934 + L1ME LINE L1 71 1185 -4895 450 0 0 0 chrX 54042206 54042256 -122931884 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chrX 54042255 54042278 -122931862 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 1990 238 80 61 chrX 54042256 54042324 -122931816 + L1ME LINE L1 1185 1259 -4821 794 186 0 0 chrX 54042338 54042462 -122931678 + FLAM_A SINE Alu 4 127 -6 219 174 87 0 chrX 54042530 54042576 -122931564 + MIR SINE MIR 212 261 -1 1875 130 11 18 chrX 54043030 54043353 -122930787 + AluSx SINE Alu 1 321 0 1066 281 83 23 chrX 54043607 54044005 -122930135 - L3 LINE CR1 0 1577 1156 758 357 107 31 chrX 54044088 54044707 -122929433 - L3 LINE CR1 -834 743 78 267 103 0 0 chrX 54045854 54045893 -122928247 + (TG)n Simple_repeat Simple_repeat 1 39 0 550 224 19 87 chrX 54046680 54046841 -122927299 - L2 LINE L2 -1 3312 3163 4506 120 7 55 chrX 54047458 54047978 -122926162 + L1MA4 LINE L1 5513 6056 -244 1900 176 3 0 chrX 54047978 54048273 -122925867 + AluJo SINE Alu 1 296 -16 4506 120 7 55 chrX 54048273 54048517 -122925623 + L1MA4 LINE L1 6056 6238 -62 1988 100 38 7 chrX 54048517 54048806 -122925334 + AluSq SINE Alu 1 298 -15 4506 120 7 55 chrX 54048806 54048858 -122925282 + L1MA4 LINE L1 6238 6291 -9 58 28 0 0 chrX 54048863 54048935 -122925205 + AT_rich Low_complexity Low_complexity 1 72 0 306 50 0 0 chrX 54049008 54049048 -122925092 + (TG)n Simple_repeat Simple_repeat 1 40 0 249 222 0 0 chrX 54049332 54049377 -122924763 + MIR3 SINE MIR 143 187 -21 294 300 146 0 chrX 54050620 54050730 -122923410 - L2 LINE L2 -9 3263 3138 244 279 0 0 chrX 54052072 54052133 -122922007 - MIR SINE MIR -37 225 165 211 136 15 45 chrX 54052145 54052211 -122921929 + (TA)n Simple_repeat Simple_repeat 1 64 0 446 252 75 0 chrX 54052314 54052421 -122921719 - MIR SINE MIR -130 132 18 950 220 40 14 chrX 54052489 54052712 -122921428 - MIR SINE MIR 0 262 34 294 344 92 11 chrX 54052752 54052941 -122921199 + MIR SINE MIR 16 221 -41 243 61 0 0 chrX 54053069 54053102 -122921038 + (CA)n Simple_repeat Simple_repeat 2 34 0 2052 109 0 33 chrX 54054036 54054338 -122919802 - AluSx SINE Alu -20 292 1 692 309 5 25 chrX 54055871 54056072 -122918068 + MIR3 SINE MIR 2 198 -10 288 0 0 0 chrX 54056196 54056228 -122917912 + (CA)n Simple_repeat Simple_repeat 2 33 0 1507 111 12 189 chrX 54056315 54056728 -122917412 + MLT1B LTR MaLR 51 390 0 324 0 0 0 chrX 54057215 54057251 -122916889 + (TG)n Simple_repeat Simple_repeat 2 37 0 5921 177 10 8 chrX 54057378 54058584 -122915556 + L1P LINE L1 3792 4999 -1147 649 276 0 7 chrX 54058695 54058847 -122915293 - MIR3 SINE MIR -5 203 53 416 315 28 21 chrX 54059082 54059225 -122914915 + MIR SINE MIR 2 146 -62 1665 186 52 48 chrX 54059226 54059689 -122914451 + MLT1C LTR MaLR 1 465 -2 516 218 121 29 chrX 54059859 54060033 -122914107 - Charlie8 DNA MER1_type -2195 222 33 6430 78 17 23 chrX 54060709 54062541 -122911599 - L1PA11 LINE L1 0 6174 4370 2325 187 40 26 chrX 54062577 54063197 -122910943 + L1M3 LINE L1 4867 5476 -707 1850 159 3 10 chrX 54063197 54063525 -122910615 + AluJb SINE Alu 1 312 0 2325 187 40 26 chrX 54063525 54063625 -122910515 + L1M3 LINE L1 5476 5573 -610 333 0 0 0 chrX 54063625 54063662 -122910478 + (TA)n Simple_repeat Simple_repeat 1 37 0 2325 187 40 26 chrX 54063662 54063875 -122910265 + L1M3 LINE L1 5573 5814 -369 * 2489 230 67 32 chrX 54063873 54065149 -122908991 - L1 LINE L1 -3693 2341 1011 533 210 105 6 chrX 54065143 54065305 -122908835 - L1 LINE L1 -4743 1222 1045 * 1244 170 37 5 chrX 54065305 54065523 -122908617 - AluJb SINE Alu -1 311 87 2024 281 42 12 chrX 54065525 54066243 -122907897 - L1 LINE L1 -4915 1040 302 309 316 27 14 chrX 54066222 54066454 -122907686 - L1M3a LINE L1 -5172 783 359 * 1454 301 18 11 chrX 54066646 54067094 -122907046 - L1M3a LINE L1 -5503 452 2 2297 115 27 0 chrX 54067098 54067464 -122906676 + L1MB3 LINE L1 5804 6179 -4 3428 167 18 11 chrX 54067465 54068124 -122906016 + L1MB5 LINE L1 5300 5963 -211 1015 141 30 15 chrX 54068153 54068352 -122905788 - L1MB8 LINE L1 -15 6163 5962 1427 149 153 27 chrX 54068564 54068826 -122905314 - AluJb SINE Alu -7 295 1 2380 63 3 20 chrX 54069633 54069933 -122904207 + AluSp SINE Alu 1 295 -18 2575 168 19 0 chrX 54070576 54070994 -122903146 + MSTB LTR MaLR 1 426 0 306 0 0 0 chrX 54073892 54073926 -122900214 + (TG)n Simple_repeat Simple_repeat 2 35 0 2317 225 60 24 chrX 54074571 54075331 -122898809 + L1ME1 LINE L1 4745 5578 -588 1432 169 81 18 chrX 54075331 54075603 -122898537 - AluJo SINE Alu -23 289 1 2317 225 60 24 chrX 54075603 54076165 -122897975 + L1ME1 LINE L1 5578 6119 -47 272 81 47 47 chrX 54076173 54076259 -122897881 + T-rich Low_complexity Low_complexity 5 90 0 612 130 0 0 chrX 54076261 54076353 -122897787 - L1PB1 LINE L1 -52 6815 6724 13319 210 32 9 chrX 54076358 54078301 -122895839 - L1PB1 LINE L1 -360 6507 4610 2399 99 0 3 chrX 54078301 54078614 -122895526 - AluSp SINE Alu 0 313 2 13319 210 32 9 chrX 54078614 54080915 -122893225 - L1PB1 LINE L1 -2257 4610 2180 2864 104 32 23 chrX 54080916 54081356 -122892784 + MLT2A1 LTR ERVL 1 444 0 43005 63 12 1 chrX 54081356 54086952 -122887188 + HERVL-A1 LTR ERVL 1 5654 0 2818 89 51 16 chrX 54086952 54087309 -122886831 + MLT2A1 LTR ERVL 1 377 -67 216 97 0 0 chrX 54087309 54087340 -122886800 + (TA)n Simple_repeat Simple_repeat 1 31 0 2818 89 51 16 chrX 54087340 54087411 -122886729 + MLT2A1 LTR ERVL 377 444 0 4836 88 21 14 chrX 54087411 54087644 -122886496 - L1PB1 LINE L1 -4753 2110 1880 2182 113 7 0 chrX 54087644 54087935 -122886205 - AluSx SINE Alu -19 293 1 4836 88 21 14 chrX 54087935 54088472 -122885668 - L1PB1 LINE L1 -4983 1880 1335 24 0 0 0 chrX 54088485 54088509 -122885631 + AT_rich Low_complexity Low_complexity 1 24 0 506 198 24 24 chrX 54088881 54089048 -122885092 + (CATA)n Simple_repeat Simple_repeat 2 168 0 383 267 0 0 chrX 54089051 54089141 -122884999 - L1MC4 LINE L1 -1339 6703 6614 712 264 14 40 chrX 54089159 54089436 -122884704 - HAL1 LINE L1 -1554 953 684 2403 180 99 41 chrX 54089880 54089904 -122884236 + MLT1F1 LTR MaLR 2 23 -544 1637 174 10 7 chrX 54089904 54090192 -122883948 + AluJo SINE Alu 1 289 -23 2403 180 99 41 chrX 54090192 54090701 -122883439 + MLT1F1 LTR MaLR 23 566 -1 373 297 119 7 chrX 54090885 54091286 -122882854 - L1MEd LINE L1 -3775 2354 1948 378 279 131 40 chrX 54091431 54091653 -122882487 - L1MEd LINE L1 -4573 1737 1496 626 185 67 0 chrX 54091657 54091776 -122882364 + L1PB1 LINE L1 2 128 -6659 16403 162 7 83 chrX 54091777 54096347 -122877793 + L1PB1 LINE L1 2158 6369 -433 378 0 0 0 chrX 54096347 54096389 -122877751 + (CA)n Simple_repeat Simple_repeat 2 43 0 2718 78 6 0 chrX 54096389 54096746 -122877394 + L1PB1 LINE L1 6444 6802 0 5827 90 20 30 chrX 54096774 54098163 -122875977 + L1PA13 LINE L1 4600 5970 -193 2013 119 0 0 chrX 54098163 54098454 -122875686 + AluSx SINE Alu 14 304 0 5827 90 20 30 chrX 54098454 54098633 -122875507 + L1PA13 LINE L1 5970 6149 -14 813 241 65 0 chrX 54098666 54098775 -122875365 + MER58C DNA MER1_type 4 104 -2316 212 0 36 0 chrX 54098775 54098803 -122875337 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 813 241 65 0 chrX 54098803 54098892 -122875248 + MER58C DNA MER1_type 104 215 0 1602 287 72 51 chrX 54098905 54100242 -122873898 - L1MEd LINE L1 -4831 1479 90 1984 89 4 0 chrX 54100249 54100497 -122873643 + AluSp SINE Alu 35 283 -30 650 196 89 45 chrX 54100701 54100880 -122873260 - MER5A DNA MER1_type -2 187 1 306 73 0 0 chrX 54101449 54101490 -122872650 + (CA)n Simple_repeat Simple_repeat 2 42 0 292 167 78 0 chrX 54101499 54101589 -122872551 + MER69 DNA AcHobo 2334 2430 -96 434 371 150 22 chrX 54101743 54102244 -122871896 - L2 LINE L2 -281 2991 2430 420 20 0 0 chrX 54103508 54103557 -122870583 + (TG)n Simple_repeat Simple_repeat 2 50 0 499 339 16 16 chrX 54103806 54103995 -122870145 - MER5A DNA MER1_type 0 189 1 2471 190 60 75 chrX 54104518 54105337 -122868803 + L1MD2 LINE L1 5375 6165 -1 2273 113 0 0 chrX 54106043 54106354 -122867786 + AluSx SINE Alu 1 311 -1 2251 182 69 40 chrX 54106524 54107029 -122867111 - MLT1F1 LTR MaLR 0 567 23 2539 44 3 0 chrX 54108598 54108896 -122865244 - AluY SINE Alu -12 299 1 193 256 120 55 chrX 54108966 54109098 -122865042 - MIR SINE MIR -52 156 20 331 278 60 0 chrX 54109257 54109390 -122864750 + L1MA9 LINE L1 6135 6275 -37 23 33 0 0 chrX 54109398 54109428 -122864712 + AT_rich Low_complexity Low_complexity 1 30 0 2880 109 14 7 chrX 54109589 54110011 -122864129 - MSTA LTR MaLR -3 425 1 3755 105 15 9 chrX 54110107 54110631 -122863509 - MER1A DNA MER1_type 0 527 1 273 360 44 44 chrX 54110717 54110945 -122863195 - L3b LINE CR1 -54 1529 1302 1102 187 5 55 chrX 54110987 54111206 -122862934 + AluJo SINE Alu 3 210 -102 1345 179 25 103 chrX 54111597 54111993 -122862147 + MLT1A1 LTR MaLR 1 365 0 856 292 100 43 chrX 54112154 54112669 -122861471 - L2 LINE L2 0 3272 2720 2494 75 0 0 chrX 54113982 54114290 -122859850 - AluY SINE Alu -3 308 1 662 116 0 27 chrX 54115485 54115597 -122858543 + L1MA3 LINE L1 6197 6305 0 28 29 0 0 chrX 54115602 54115637 -122858503 + AT_rich Low_complexity Low_complexity 1 35 0 20782 95 191 14 chrX 54115769 54118493 -122855647 + L1P LINE L1 11 3566 -2580 2687 50 0 6 chrX 54118493 54118830 -122855310 + L1PA5 LINE L1 5820 6154 0 20782 95 191 14 chrX 54118830 54119813 -122854327 + L1P LINE L1 3566 4374 -1772 592 245 210 5 chrX 54169857 54170057 -122804083 + MIR SINE MIR 13 253 -9 231 226 105 57 chrX 54170196 54170320 -122803820 + L2 LINE L2 3184 3313 0 389 323 106 12 chrX 54170343 54170504 -122803636 - MIR SINE MIR -40 222 47 483 353 11 16 chrX 54170511 54170695 -122803445 + MIR3 SINE MIR 1 183 -25 498 163 98 179 chrX 54171119 54171208 -122802932 + MER45A DNA AcHobo 1 96 -1485 1868 162 21 0 chrX 54171208 54171498 -122802642 - AluJb SINE Alu -16 296 1 498 163 98 179 chrX 54171498 54171512 -122802628 + MER45A DNA AcHobo 96 110 -1471 2353 69 14 0 chrX 54171512 54171802 -122802338 - AluY SINE Alu -17 294 1 498 163 98 179 chrX 54171802 54171881 -122802259 + MER45A DNA AcHobo 110 169 -9 304 231 138 54 chrX 54171955 54172085 -122802055 - MIR3 SINE MIR -26 182 42 2092 99 0 3 chrX 54172174 54172478 -122801662 - L1PB1 LINE L1 0 6151 5849 348 96 0 0 chrX 54172488 54172540 -122801600 - L1PB1 LINE L1 -392 5759 5708 2450 74 0 7 chrX 54172544 54172840 -122801300 - AluSg1 SINE Alu -15 294 1 326 294 18 65 chrX 54172967 54173137 -122801003 - L3 LINE CR1 -125 1452 1291 238 317 67 17 chrX 54173512 54173632 -122800508 + L3b LINE CR1 1262 1387 -196 591 302 6 12 chrX 54173686 54173858 -122800282 - MER5B DNA MER1_type -4 174 4 359 283 197 0 chrX 54173869 54174021 -122800119 - MER5A DNA MER1_type 0 189 8 201 147 0 0 chrX 54174789 54174823 -122799317 + (TTA)n Simple_repeat Simple_repeat 2 35 0 297 0 0 0 chrX 54174870 54174903 -122799237 + (CA)n Simple_repeat Simple_repeat 2 34 0 274 349 98 28 chrX 54175317 54175572 -122798568 - L2 LINE L2 -5 3267 2995 245 316 0 11 chrX 54175690 54175785 -122798355 + MIR SINE MIR 53 146 -62 264 331 41 8 chrX 54176060 54176181 -122797959 - MIR SINE MIR -20 242 118 556 285 160 0 chrX 54176215 54176415 -122797725 + MIR SINE MIR 13 244 -18 980 279 54 69 chrX 54176740 54177259 -122796881 + MLT1J LTR MaLR 1 511 0 544 242 8 15 chrX 54177589 54177721 -122796419 - MIR SINE MIR -98 164 34 704 202 15 84 chrX 54177736 54177939 -122796201 - MER5A DNA MER1_type 0 189 1 215 290 10 20 chrX 54178598 54178698 -122795442 + (TGG)n Simple_repeat Simple_repeat 3 101 0 331 326 87 0 chrX 54178737 54178875 -122795265 + L2 LINE L2 3122 3271 -1 385 266 125 9 chrX 54180361 54180574 -122793566 - MIR3 SINE MIR -14 248 8 309 109 0 0 chrX 54180823 54180878 -122793262 + (CA)n Simple_repeat Simple_repeat 1 55 0 280 295 162 15 chrX 54181008 54181277 -122792863 + L2 LINE L2 2788 3090 -182 539 288 26 45 chrX 54181497 54181651 -122792489 + MIR SINE MIR 4 152 -110 2392 84 0 0 chrX 54181651 54181938 -122792202 + AluSc SINE Alu 1 287 -22 539 288 26 45 chrX 54181938 54182047 -122792093 + MIR SINE MIR 152 262 0 246 136 0 0 chrX 54182070 54182114 -122792026 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 299 350 17 0 chrX 54182758 54182878 -122791262 + MIR SINE MIR 26 147 -61 206 313 94 19 chrX 54183061 54183221 -122790919 + L2 LINE L2 2933 3104 -209 219 319 87 0 chrX 54183255 54183324 -122790816 + L2 LINE L2 3187 3261 -11 338 258 11 22 chrX 54183465 54183554 -122790586 + L2 LINE L2 3196 3283 -30 * 983 228 69 9 chrX 54183541 54183773 -122790367 - MIR SINE MIR -11 251 6 182 194 0 0 chrX 54183781 54183817 -122790323 + L2 LINE L2 3278 3313 0 573 264 39 33 chrX 54183820 54184002 -122790138 - MIR SINE MIR -19 243 61 388 268 32 8 chrX 54184131 54184254 -122789886 - MIR3 SINE MIR -25 183 58 491 287 126 6 chrX 54184656 54184830 -122789310 + MER91A DNA MER1_type 2 196 0 414 176 50 76 chrX 54184909 54185028 -122789112 + MIR SINE MIR 30 145 -117 363 283 17 0 chrX 54185874 54185994 -122788146 + MIR SINE MIR 27 148 -60 325 259 121 54 chrX 54186403 54186569 -122787571 - MIR3 SINE MIR -1 207 31 275 167 17 50 chrX 54186800 54186920 -122787220 + GA-rich Low_complexity Low_complexity 1 116 0 180 77 0 0 chrX 54187797 54187823 -122786317 + (TG)n Simple_repeat Simple_repeat 1 26 0 530 291 25 35 chrX 54187856 54188055 -122786085 + MIR3 SINE MIR 7 203 -5 645 222 33 13 chrX 54188732 54188885 -122785255 + MIR SINE MIR 79 234 -28 2574 96 12 5 chrX 54189006 54189682 -122784458 + AluY SINE Alu 1 311 0 233 336 118 0 chrX 54189731 54189841 -122784299 - MIR SINE MIR -70 138 16 201 191 0 48 chrX 54190038 54190080 -122784060 - L3 LINE CR1 -21 1556 1517 2225 115 3 0 chrX 54192021 54192316 -122781824 + AluSp SINE Alu 1 296 -17 411 266 120 34 chrX 54192466 54192688 -122781452 + MIR SINE MIR 6 243 -19 2100 111 42 0 chrX 54193068 54193357 -122780783 + AluSx SINE Alu 1 301 -11 228 242 0 0 chrX 54193847 54193910 -122780230 + MIR SINE MIR 72 135 -73 2327 110 0 7 chrX 54193952 54194261 -122779879 + AluSc SINE Alu 1 307 -2 770 294 28 0 chrX 54194316 54194530 -122779610 - MIR SINE MIR -41 221 2 1944 146 0 30 chrX 54194625 54194926 -122779214 + AluSx SINE Alu 1 292 -20 26 30 0 0 chrX 54194926 54194959 -122779181 + AT_rich Low_complexity Low_complexity 1 33 0 531 0 0 0 chrX 54195541 54195600 -122778540 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1186 210 12 4 chrX 54195655 54195903 -122778237 + MIR SINE MIR 3 252 -10 3259 121 43 27 chrX 54196106 54196692 -122777448 + LTR49 LTR ERV1 1 595 0 359 238 0 0 chrX 54196834 54196914 -122777226 + MIR3 SINE MIR 116 195 -13 398 392 33 0 chrX 54197126 54197366 -122776774 + L2 LINE L2 2449 2696 -618 1700 198 5 27 chrX 54197511 54197884 -122776256 - MLT1A1 LTR MaLR 0 365 1 2195 106 27 0 chrX 54197999 54198291 -122775849 - AluSg SINE Alu -10 300 1 264 279 39 32 chrX 54198303 54198346 -122775794 - L1ME4a LINE L1 -189 5932 5891 1671 175 3 52 chrX 54198346 54198671 -122775469 - AluJo SINE Alu -3 309 1 264 279 39 32 chrX 54198671 54198781 -122775359 - L1ME4a LINE L1 -230 5891 5778 251 250 43 11 chrX 54199152 54199244 -122774896 + MER113 DNA MER1_type? 3 97 -424 2317 86 0 0 chrX 54199302 54199623 -122774517 - AluSc SINE Alu 0 321 1 744 245 59 78 chrX 54200335 54200743 -122773397 - L1ME4a LINE L1 -387 5734 5335 301 318 11 45 chrX 54200826 54201005 -122773135 + L2 LINE L2 2692 2864 -450 195 323 87 25 chrX 54201060 54201221 -122772919 + L2 LINE L2 2994 3164 -108 368 40 20 0 chrX 54201873 54201923 -122772217 + (CA)n Simple_repeat Simple_repeat 1 51 0 186 295 107 36 chrX 54202155 54202267 -122771873 - MIR SINE MIR -85 177 58 226 293 0 0 chrX 54202312 54202370 -122771770 + L2 LINE L2 3211 3268 -4 661 244 144 52 chrX 54202559 54202617 -122771523 - MIR SINE MIR -1 261 210 2318 100 0 0 chrX 54202617 54203074 -122771066 - AluSx SINE Alu 0 312 1 661 244 144 52 chrX 54203074 54203244 -122770896 - MIR SINE MIR -52 210 12 703 265 34 45 chrX 54203463 54203644 -122770496 + Charlie8 DNA MER1_type 3 182 -159 2009 167 25 8 chrX 54203644 54204003 -122770137 + MLT1A1 LTR MaLR 1 365 0 703 265 34 45 chrX 54204003 54204089 -122770051 + Charlie8 DNA MER1_type 182 267 -74 699 71 0 0 chrX 54204814 54204912 -122769228 + AluSg/x SINE Alu 213 310 0 951 183 0 11 chrX 54205492 54205672 -122768468 + MER5B DNA MER1_type 1 178 0 238 275 8 42 chrX 54206048 54206168 -122767972 - L1MC4 LINE L1 -1 8041 7926 297 266 0 55 chrX 54206311 54206420 -122767720 - MIR SINE MIR -101 161 59 221 296 52 17 chrX 54207130 54207245 -122766895 - MIR SINE MIR -79 183 65 409 249 106 74 chrX 54207657 54207846 -122766294 - MIR SINE MIR -4 258 64 410 325 184 9 chrX 54209144 54209786 -122764354 + L2 LINE L2 2223 2976 -338 440 240 110 26 chrX 54210072 54210226 -122763914 + MIR SINE MIR 92 258 -4 290 328 57 8 chrX 54210579 54210701 -122763439 + MIR SINE MIR 109 236 -26 431 258 32 136 chrX 54210712 54210817 -122763323 - MIR SINE MIR -8 254 182 2406 103 0 0 chrX 54210817 54211127 -122763013 - AluSx SINE Alu -2 310 1 431 258 32 136 chrX 54211127 54211242 -122762898 - MIR SINE MIR -80 182 57 490 124 0 31 chrX 54211242 54211339 -122762801 - L1MB8 LINE L1 0 6178 6085 281 141 0 167 chrX 54211965 54212043 -122762097 - MER33 DNA MER1_type -1 362 298 2249 108 3 19 chrX 54212060 54212375 -122761765 - AluSq SINE Alu -3 310 1 1905 156 0 11 chrX 54212415 54212698 -122761442 - AluJb SINE Alu -23 289 10 1149 176 38 8 chrX 54212707 54212968 -122761172 - MER33 DNA MER1_type -54 270 2 16662 96 6 6 chrX 54213210 54216091 -122758049 - L1PA7 LINE L1 -5 6464 3583 2065 135 0 35 chrX 54216091 54216409 -122757731 - AluSq SINE Alu -6 307 1 16662 96 6 6 chrX 54216409 54216829 -122757311 - L1PA7 LINE L1 -2886 3583 3164 12497 110 4 26 chrX 54216829 54218815 -122755325 - L1PA7 LINE L1 -4477 1984 8 313 282 92 0 chrX 54218824 54218955 -122755185 - L1MC4a LINE L1 -1845 5963 5821 4245 63 0 0 chrX 54218955 54219510 -122754630 - L1PA7 LINE L1 -1 6153 5599 6713 63 11 1 chrX 54219510 54220669 -122753471 + L1PA7 LINE L1 4434 5606 -548 514 211 61 20 chrX 54220693 54220840 -122753300 - L1MC4a LINE L1 -2040 5768 5616 243 354 18 0 chrX 54220845 54220958 -122753182 - L2 LINE L2 -563 2751 2637 204 302 0 0 chrX 54221023 54221086 -122753054 - L2 LINE L2 -73 3199 3137 577 237 141 30 chrX 54221308 54221506 -122752634 + MIR SINE MIR 29 248 -14 524 268 0 7 chrX 54221822 54221960 -122752180 + MIR3 SINE MIR 45 181 -27 241 234 0 0 chrX 54222705 54222752 -122751388 + L3b LINE CR1 1289 1335 -248 410 311 79 27 chrX 54222830 54223211 -122750929 + L2 LINE L2 2644 3040 -232 511 285 38 48 chrX 54223261 54223447 -122750693 - L2 LINE L2 -1 3312 3129 422 296 30 0 chrX 54223449 54223587 -122750553 + MER63 DNA MER1_type 5 781 -280 301 243 27 108 chrX 54223612 54223797 -122750343 - L2 LINE L2 -175 3138 2969 1532 218 2 48 chrX 54223826 54224220 -122749920 - L1ME3 LINE L1 0 6162 5787 213 320 78 19 chrX 54224877 54224980 -122749160 - MIR SINE MIR -117 145 37 372 301 98 18 chrX 54225483 54225646 -122748494 + MIR3 SINE MIR 11 186 -22 1730 166 14 0 chrX 54226473 54226931 -122747209 - AluJb SINE Alu 0 462 1 389 302 183 20 chrX 54226970 54227172 -122746968 + MIR SINE MIR 28 262 0 644 228 154 0 chrX 54227314 54227463 -122746677 - MER5A DNA MER1_type -6 183 12 853 261 19 5 chrX 54227507 54227718 -122746422 - MIR SINE MIR -14 248 35 627 276 22 33 chrX 54228562 54228743 -122745397 - L2 LINE L2 0 3313 3135 1070 299 106 47 chrX 54229838 54229996 -122744144 - L3 LINE CR1 -45 1532 1385 2445 102 0 0 chrX 54229996 54230300 -122743840 - AluSx SINE Alu -8 304 1 1070 299 106 47 chrX 54230300 54230870 -122743270 - L3 LINE CR1 -192 1385 761 1500 210 155 5 chrX 54231300 54231733 -122742407 + MLT1D LTR MaLR 1 498 -7 283 193 0 10 chrX 54232154 54232227 -122741913 + MIR SINE MIR 108 179 -29 456 340 57 5 chrX 54232954 54233187 -122740953 + MIR SINE MIR 8 249 -13 186 292 163 35 chrX 54233713 54233915 -122740225 + L2 LINE L2 2818 3045 -268 379 254 110 0 chrX 54234360 54234478 -122739662 + MIR SINE MIR 76 206 -56 2255 119 0 3 chrX 54234617 54234927 -122739213 - AluSx SINE Alu -3 309 1 1326 236 51 17 chrX 54235065 54235581 -122738559 - L2 LINE L2 -261 3052 2520 1894 166 26 0 chrX 54235595 54235897 -122738243 + AluJb SINE Alu 3 312 0 466 299 51 20 chrX 54235921 54236118 -122738022 - MIR SINE MIR -58 204 2 304 348 42 0 chrX 54236801 54236919 -122737221 - MIR3 SINE MIR -53 155 33 571 248 224 5 chrX 54237905 54238115 -122736025 - MIR SINE MIR -5 257 2 241 167 0 67 chrX 54238503 54238563 -122735577 + MIR SINE MIR 196 251 -11 577 355 30 4 chrX 54239434 54239699 -122734441 + L3 LINE CR1 1259 1530 -47 229 263 25 25 chrX 54239931 54240011 -122734129 + (CAGAGA)n Simple_repeat Simple_repeat 5 84 0 507 294 149 7 chrX 54240263 54240545 -122733595 + L3 LINE CR1 1218 1539 -38 377 280 13 0 chrX 54240729 54240886 -122733254 + (TCTA)n Simple_repeat Simple_repeat 1 159 0 246 359 42 11 chrX 54241252 54241409 -122732731 + MIR SINE MIR 34 205 -3 457 246 237 19 chrX 54241509 54241716 -122732424 + MIR SINE MIR 11 262 0 2636 61 0 3 chrX 54242301 54242613 -122731527 + AluY SINE Alu 1 311 0 2417 106 0 0 chrX 54242648 54242960 -122731180 + AluSx SINE Alu 1 312 0 206 281 229 0 chrX 54242970 54243066 -122731074 - MIR SINE MIR -15 247 130 214 185 0 19 chrX 54243564 54243618 -122730522 + MIR SINE MIR 91 143 -65 2181 151 60 27 chrX 54244082 54244532 -122729608 - LTR29 LTR ERV1 0 622 158 286 239 0 0 chrX 54244602 54244669 -122729471 - MER34 LTR ERV1 -475 67 1 221 288 17 0 chrX 54245281 54245340 -122728800 - MIR3 SINE MIR -48 160 101 373 202 34 45 chrX 54246268 54246357 -122727783 + MIR3 SINE MIR 67 154 -54 4841 154 22 17 chrX 54246369 54247345 -122726795 + L1MB7 LINE L1 5185 6165 -19 280 289 134 14 chrX 54247362 54247504 -122726636 + MER5A DNA MER1_type 31 189 0 246 274 96 22 chrX 54248224 54248359 -122725781 - MIR SINE MIR 0 262 118 485 227 82 0 chrX 54248371 54248481 -122725659 - L2 LINE L2 0 3313 3195 340 250 45 9 chrX 54248679 54248791 -122725349 + MER113 DNA MER1_type? 1 116 -405 369 288 72 0 chrX 54249446 54249557 -122724583 + MIR SINE MIR 69 187 -75 340 135 0 0 chrX 54249787 54249839 -122724301 + MER116 DNA Mariner 1 52 -28 315 311 29 46 chrX 54249925 54250166 -122723974 - L2 LINE L2 -221 3051 2815 520 254 101 37 chrX 54250326 54250515 -122723625 + L3b LINE CR1 1361 1561 -22 252 257 171 0 chrX 54250859 54250929 -122723211 + MIR SINE MIR 26 107 -155 547 237 20 46 chrX 54250982 54251134 -122723006 - MIR SINE MIR -112 150 3 280 234 120 62 chrX 54251134 54251249 -122722891 + MIR SINE MIR 84 209 -53 220 246 92 0 chrX 54251474 54251539 -122722601 + L2 LINE L2 3243 3313 0 223 188 16 31 chrX 54252080 54252144 -122721996 + MIR SINE MIR 81 143 -65 236 219 16 31 chrX 54252470 54252534 -122721606 + G-rich Low_complexity Low_complexity 1 63 0 637 303 87 24 chrX 54252675 54252907 -122721233 - MIR SINE MIR -18 244 3 182 186 0 23 chrX 54253098 54253141 -122720999 - L2 LINE L2 -87 3185 3144 241 309 85 21 chrX 54253301 54253395 -122720745 + MIR SINE MIR 20 119 -143 * 503 308 170 28 chrX 54253382 54254043 -122720097 + L2 LINE L2 2552 3313 0 278 337 11 0 chrX 54254079 54254174 -122719966 + MIR SINE MIR 161 256 -6 390 261 99 0 chrX 54254384 54254495 -122719645 - MER63 DNA MER1_type -86 750 3 436 288 117 0 chrX 54254869 54255032 -122719108 + MIR3 SINE MIR 2 183 -25 2318 110 7 0 chrX 54255116 54255425 -122718715 - AluSx SINE Alu -1 311 1 775 255 51 31 chrX 54255535 54255790 -122718350 - MIR SINE MIR 0 262 3 335 242 0 0 chrX 54255930 54256022 -122718118 + MIR SINE MIR 58 150 -58 404 281 168 5 chrX 54256047 54256250 -122717890 - MIR SINE MIR -7 255 20 7410 136 45 17 chrX 54256250 54257562 -122716578 - L1MC3 LINE L1 0 7785 6437 204 302 0 0 chrX 54258628 54258681 -122715459 - L3 LINE CR1 -2 1575 1523 207 293 93 13 chrX 54258772 54258847 -122715293 - L2 LINE L2 -84 3188 3108 456 330 104 5 chrX 54258886 54259098 -122715042 - MIR SINE MIR -10 252 20 523 269 40 76 chrX 54260031 54260280 -122713860 - MIR SINE MIR -22 240 1 961 139 48 48 chrX 54260370 54260535 -122713605 - FRAM SINE Alu -12 164 1 371 316 44 0 chrX 54260767 54260881 -122713259 - L2 LINE L2 -6 3266 3148 2486 102 42 7 chrX 54260985 54261221 -122712919 - L1MA2 LINE L1 0 6304 6047 195 42 0 0 chrX 54261221 54261245 -122712895 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 2486 102 42 7 chrX 54261245 54261412 -122712728 - L1MA2 LINE L1 -257 6047 5887 653 282 41 0 chrX 54261412 54261582 -122712558 - MIR SINE MIR -57 205 29 411 83 0 0 chrX 54263730 54263790 -122710350 + (CA)n Simple_repeat Simple_repeat 1 60 0 338 247 14 0 chrX 54263795 54263868 -122710272 - L2 LINE L2 -42 3230 3157 384 40 0 0 chrX 54264201 54264251 -122709889 + (TC)n Simple_repeat Simple_repeat 1 50 0 342 181 0 124 chrX 54264628 54264733 -122709407 + MER103 DNA DNA 10 101 -65 740 132 79 89 chrX 54265480 54265636 -122708504 + MER53 DNA DNA 1 156 -33 2478 90 3 0 chrX 54265636 54265946 -122708194 + AluSp SINE Alu 1 311 -2 740 132 79 89 chrX 54265946 54265979 -122708161 + MER53 DNA DNA 156 188 -1 263 293 0 0 chrX 54266189 54266271 -122707869 + MIR SINE MIR 26 107 -101 2225 95 0 3 chrX 54267068 54267410 -122706730 + AluSg SINE Alu 1 341 0 425 242 0 11 chrX 54267606 54267701 -122706439 - MIR3 SINE MIR -18 190 97 537 245 28 21 chrX 54267762 54267905 -122706235 - MIR SINE MIR -117 145 2 249 196 0 0 chrX 54268248 54268294 -122705846 - MIR SINE MIR -112 150 105 251 301 13 32 chrX 54268789 54268945 -122705195 + GA-rich Low_complexity Low_complexity 5 157 0 360 233 0 58 chrX 54269017 54269103 -122705037 + L2 LINE L2 3192 3272 0 441 229 101 11 chrX 54269252 54269410 -122704730 - MIR3 SINE MIR -3 205 37 599 255 61 56 chrX 54269740 54269971 -122704169 + MIR SINE MIR 30 261 -1 228 135 0 0 chrX 54270292 54270329 -122703811 + (TG)n Simple_repeat Simple_repeat 2 38 0 402 21 0 0 chrX 54270692 54270739 -122703401 + (CA)n Simple_repeat Simple_repeat 1 47 0 237 312 0 30 chrX 54270804 54270927 -122703213 + MIR SINE MIR 59 177 -60 210 130 22 22 chrX 54272181 54272227 -122701913 - MIR SINE MIR -73 135 90 567 245 122 5 chrX 54273202 54273398 -122700742 + L2 LINE L2 2555 2773 -541 1384 103 122 9 chrX 54273406 54273619 -122700521 + AluSg/x SINE Alu 72 308 -2 3059 53 0 22 chrX 54273780 54274195 -122699945 + L1PA6 LINE L1 5749 6154 0 241 166 0 147 chrX 54274516 54274599 -122699541 - MIR SINE MIR -65 143 79 310 323 0 0 chrX 54275164 54275257 -122698883 + MIR SINE MIR 57 149 -113 219 311 85 0 chrX 54275352 54275458 -122698682 + MIR3 SINE MIR 82 196 -12 783 172 64 6 chrX 54275573 54275730 -122698410 - MER5B DNA MER1_type -12 166 1 302 266 234 8 chrX 54275786 54275914 -122698226 + MIR SINE MIR 55 211 -51 288 202 30 14 chrX 54276037 54276122 -122698018 - MIR SINE MIR -69 139 56 691 215 51 6 chrX 54276136 54276294 -122697846 + MIR SINE MIR 6 170 -92 359 259 26 17 chrX 54276326 54276442 -122697698 - MIR SINE MIR -55 153 37 522 0 0 0 chrX 54277146 54277204 -122696936 + (CA)n Simple_repeat Simple_repeat 2 59 0 1005 237 32 8 chrX 54277426 54277679 -122696461 - MIR SINE MIR 0 262 4 206 263 105 32 chrX 54277679 54277770 -122696370 - L2 LINE L2 -71 3201 3104 233 188 250 0 chrX 54277791 54277855 -122696285 + MIR SINE MIR 33 112 -96 294 190 17 0 chrX 54278863 54278921 -122695219 + MIR SINE MIR 103 161 -101 229 281 18 0 chrX 54279594 54279651 -122694489 + MIR3 SINE MIR 113 170 -38 273 200 71 14 chrX 54279718 54279788 -122694352 - MIR SINE MIR -171 91 18 210 71 0 0 chrX 54279860 54279888 -122694252 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 645 304 30 20 chrX 54279996 54280277 -122693863 - L1ME3A LINE L1 -303 5867 5569 205 232 0 71 chrX 54280281 54280337 -122693803 - L2 LINE L2 0 3272 3221 258 333 15 22 chrX 54280566 54280701 -122693439 + MIR3 SINE MIR 22 155 -53 23 0 0 0 chrX 54281061 54281084 -122693056 + AT_rich Low_complexity Low_complexity 1 23 0 461 284 62 0 chrX 54281464 54281626 -122692514 + MIR SINE MIR 80 251 -11 473 174 28 46 chrX 54281834 54281943 -122692197 - MIR SINE MIR -123 139 33 715 155 77 30 chrX 54281950 54282118 -122692022 - MER53 DNA DNA -13 176 1 496 248 155 29 chrX 54282474 54282680 -122691460 + MIR SINE MIR 31 262 0 250 270 67 0 chrX 54283189 54283278 -122690862 + MIR SINE MIR 98 192 -70 199 254 178 17 chrX 54283258 54283376 -122690764 + MIR3 SINE MIR 7 143 -65 * 295 247 39 0 chrX 54283345 54283422 -122690718 + MIR SINE MIR 112 191 -71 192 258 32 16 chrX 54283494 54283556 -122690584 + L2 LINE L2 2988 3050 -263 216 237 51 0 chrX 54283716 54283775 -122690365 + L2 LINE L2 3246 3307 -6 203 270 20 40 chrX 54284047 54284147 -122689993 + L3 LINE CR1 1043 1140 -437 426 20 0 0 chrX 54284794 54284845 -122689295 + (TTG)n Simple_repeat Simple_repeat 2 52 0 1434 170 0 5 chrX 54284871 54285094 -122689046 - AluJo SINE Alu -90 222 1 510 283 138 40 chrX 54285331 54285608 -122688532 + L2 LINE L2 2919 3234 -79 3429 125 36 27 chrX 54285608 54286198 -122687942 + LTR49 LTR ERV1 1 595 0 510 283 138 40 chrX 54286198 54286245 -122687895 + L2 LINE L2 3234 3275 -38 357 24 0 0 chrX 54286251 54286293 -122687847 + (CA)n Simple_repeat Simple_repeat 1 42 0 713 299 109 40 chrX 54286407 54286855 -122687285 - L2 LINE L2 -1 3312 2834 342 282 100 29 chrX 54287247 54287424 -122686716 - MIR3 SINE MIR -32 176 5 393 284 112 39 chrX 54287501 54287733 -122686407 + MIR SINE MIR 6 254 -8 189 289 118 53 chrX 54288747 54288823 -122685317 - L2 LINE L2 -81 3191 3111 752 272 45 0 chrX 54289609 54289811 -122684329 + MIR SINE MIR 52 262 0 372 248 116 71 chrX 54289926 54290124 -122684016 + MIR SINE MIR 31 237 -25 606 227 151 0 chrX 54290650 54290822 -122683318 + MIR SINE MIR 35 232 -30 2401 86 0 3 chrX 54291296 54291597 -122682543 + AluSq SINE Alu 1 300 -13 537 271 14 0 chrX 54291599 54291743 -122682397 + MIR SINE MIR 39 184 -78 243 218 195 11 chrX 54292276 54292363 -122681777 - L2 LINE L2 -2 3270 3168 234 254 109 55 chrX 54292437 54292547 -122681593 + MIR3 SINE MIR 60 175 -33 196 298 105 0 chrX 54293415 54293529 -122680611 + MIR3 SINE MIR 12 137 -71 440 244 116 52 chrX 54293721 54293893 -122680247 + MIR SINE MIR 44 226 -36 479 262 21 7 chrX 54294349 54294490 -122679650 + MIR SINE MIR 115 257 -5 4176 172 80 8 chrX 54294580 54295400 -122678740 - L1MB7 LINE L1 -5 6677 5800 342 0 0 0 chrX 54295400 54295438 -122678702 + (TG)n Simple_repeat Simple_repeat 1 38 0 4176 172 80 8 chrX 54295438 54295463 -122678677 - L1MB7 LINE L1 -882 5800 5778 22 70 0 0 chrX 54295613 54295656 -122678484 + AT_rich Low_complexity Low_complexity 1 43 0 2317 99 7 3 chrX 54295855 54296159 -122677981 + AluSx SINE Alu 1 305 -7 1800 160 0 4 chrX 54296159 54296440 -122677700 - AluJo SINE Alu -19 293 14 8066 191 25 71 chrX 54296628 54296894 -122677246 - L1MA4 LINE L1 -5 6295 6018 1586 130 254 20 chrX 54296894 54297241 -122676899 + MSTA LTR MaLR 1 428 0 8066 191 25 71 chrX 54297241 54297953 -122676187 - L1MA4 LINE L1 -282 6018 5275 2290 84 0 39 chrX 54297953 54298262 -122675878 - AluSx SINE Alu -15 297 1 8066 191 25 71 chrX 54298262 54298858 -122675282 - L1MA4 LINE L1 -1025 5275 4653 1353 157 0 32 chrX 54298858 54298869 -122675271 - AluJb SINE Alu -18 294 284 189 94 0 0 chrX 54298869 54298901 -122675239 + (TA)n Simple_repeat Simple_repeat 2 33 0 1353 157 0 32 chrX 54298901 54299105 -122675035 - AluJb SINE Alu -28 284 86 8066 191 25 71 chrX 54299105 54299874 -122674266 - L1MA4 LINE L1 -1647 4653 3850 2270 122 0 0 chrX 54299874 54300186 -122673954 - AluSx SINE Alu 0 312 1 8066 191 25 71 chrX 54300186 54301068 -122673072 - L1MA4 LINE L1 -2450 3850 3101 2089 125 0 14 chrX 54301068 54301365 -122672775 - AluSg SINE Alu -16 294 2 8066 191 25 71 chrX 54301365 54301378 -122672762 - L1MA4 LINE L1 -3199 3101 3089 390 197 13 0 chrX 54301369 54301445 -122672695 - L1 LINE L1 -2261 4947 4871 * 373 285 70 0 chrX 54301440 54301626 -122672514 - L1 LINE L1 -5690 1519 1321 * 269 266 21 21 chrX 54301605 54301699 -122672441 - L1 LINE L1 -6409 800 707 * 8257 229 71 73 chrX 54301700 54301831 -122672309 - L1MB7 LINE L1 -841 5803 5673 2375 147 76 0 chrX 54301831 54302227 -122671913 - MSTB LTR MaLR 0 426 1 8257 229 71 73 chrX 54302227 54302294 -122671846 - L1MB7 LINE L1 -971 5673 5607 2241 119 0 0 chrX 54302294 54302588 -122671552 - AluSg SINE Alu -16 294 1 8257 229 71 73 chrX 54302588 54303298 -122670842 - L1MB7 LINE L1 -1037 5607 4897 998 102 0 0 chrX 54303298 54303447 -122670693 - AluSp/q SINE Alu 0 304 156 8257 229 71 73 chrX 54303447 54304906 -122669234 - L1MB7 LINE L1 -1747 4897 3437 2338 112 0 0 chrX 54304906 54305211 -122668929 + AluSx SINE Alu 1 305 -7 8257 229 71 73 chrX 54305211 54305606 -122668534 - L1MB7 LINE L1 -3207 3437 3043 2953 121 2 5 chrX 54305606 54306046 -122668094 - L1PA13 LINE L1 -5 6158 5720 8257 229 71 73 chrX 54306046 54306225 -122667915 - L1MB7 LINE L1 -3601 3043 2865 2138 135 3 0 chrX 54306225 54306536 -122667604 - AluSx SINE Alu 0 312 1 8257 229 71 73 chrX 54306536 54307760 -122666380 - L1MB7 LINE L1 -3779 2865 1640 17590 34 1 0 chrX 54307760 54310612 -122663528 - L1PA4 LINE L1 -3 6152 3298 8257 229 71 73 chrX 54310612 54310669 -122663471 - L1MB7 LINE L1 -5004 1640 1584 2115 125 17 0 chrX 54310669 54310964 -122663176 - AluSx SINE Alu -12 300 1 8257 229 71 73 chrX 54310964 54311001 -122663139 - L1MB7 LINE L1 -5060 1584 1298 237 48 0 0 chrX 54311024 54311066 -122663074 - L1MB4 LINE L1 -14 6166 6125 1629 150 68 17 chrX 54311070 54311364 -122662776 - AluJo SINE Alu -3 309 1 1154 174 29 14 chrX 54311387 54311594 -122662546 + MER2 DNA MER2_type 1 210 -135 395 184 92 0 chrX 54311683 54311759 -122662381 + MER2 DNA MER2_type 263 345 0 4631 177 35 63 chrX 54311759 54312538 -122661602 - L1MB3 LINE L1 -62 6121 5321 2036 153 0 0 chrX 54312538 54312838 -122661302 - AluSx SINE Alu -12 300 1 4631 177 35 63 chrX 54312838 54312849 -122661291 - L1MB3 LINE L1 -862 5321 5311 2277 116 0 0 chrX 54312849 54313151 -122660989 - AluSx SINE Alu -10 302 1 4631 177 35 63 chrX 54313151 54314025 -122660115 - L1MB3 LINE L1 -872 5311 4414 324 0 0 0 chrX 54314025 54314061 -122660079 + (TG)n Simple_repeat Simple_repeat 1 36 0 1505 170 40 32 chrX 54314061 54314338 -122659802 - AluJo SINE Alu -31 281 3 4631 177 35 63 chrX 54314338 54314351 -122659789 - L1MB3 LINE L1 -1768 4415 4403 1783 163 3 30 chrX 54314351 54314651 -122659489 - AluJo SINE Alu -20 292 1 4631 177 35 63 chrX 54314651 54314968 -122659172 - L1MB3 LINE L1 -1780 4403 4156 1731 233 65 2 chrX 54314996 54315456 -122658684 - L1M4 LINE L1 -1825 4321 3833 * 4593 202 56 51 chrX 54315442 54316632 -122657508 - L1MB7 LINE L1 -5331 1211 16 279 333 62 0 chrX 54316644 54316788 -122657352 - L2 LINE L2 -248 3024 2872 1141 254 86 42 chrX 54316835 54317288 -122656852 - MLT1K LTR MaLR -3 473 1 1649 90 14 0 chrX 54317563 54317774 -122656366 - AluSg/x SINE Alu -17 295 82 438 265 61 0 chrX 54317807 54317939 -122656201 - MIR3 SINE MIR -44 164 25 887 266 96 32 chrX 54318575 54319122 -122655018 + L2 LINE L2 2567 3166 -147 1851 142 39 4 chrX 54319122 54319403 -122654737 - AluSx SINE Alu -21 291 1 887 266 96 32 chrX 54319403 54319562 -122654578 + L2 LINE L2 3166 3313 0 423 229 23 46 chrX 54319603 54319734 -122654406 - MIR3 SINE MIR -8 200 73 42597 63 3 0 chrX 54319753 54325893 -122648247 + L1PA5 LINE L1 1 6153 -1 421 267 48 0 chrX 54326194 54326299 -122647841 - MIR SINE MIR -108 154 45 385 203 180 23 chrX 54327630 54327758 -122646382 + L3 LINE CR1 1167 1314 -263 306 306 201 1 chrX 54327810 54327936 -122646204 - MIR SINE MIR -63 145 5 238 77 0 26 chrX 54328324 54328363 -122645777 + L3b LINE CR1 1362 1399 -184 * 271 125 21 0 chrX 54328331 54328379 -122645761 + L3 LINE CR1 1368 1416 -161 267 312 21 21 chrX 54328529 54328744 -122645396 + CT-rich Low_complexity Low_complexity 1 215 0 215 282 22 44 chrX 54328664 54328845 -122645295 + (TCTCTG)n Simple_repeat Simple_repeat 3 179 0 * 902 334 105 11 chrX 54329381 54330365 -122643775 - L2 LINE L2 -417 2897 1822 266 49 0 24 chrX 54330524 54330565 -122643575 + (CA)n Simple_repeat Simple_repeat 1 40 0 288 284 24 31 chrX 54330773 54330900 -122643240 + G-rich Low_complexity Low_complexity 3 128 0 340 261 84 8 chrX 54330945 54331064 -122643076 + MIR SINE MIR 33 160 -102 735 293 59 15 chrX 54332556 54332880 -122641260 + L3 LINE CR1 1155 1492 -85 1026 256 174 22 chrX 54333501 54334257 -122639883 + L2 LINE L2 2464 3309 -4 451 255 130 12 chrX 54335125 54335293 -122638847 - MIR SINE MIR -33 229 37 180 267 189 50 chrX 54335308 54335488 -122638652 - MIR SINE MIR -7 255 51 2104 95 46 3 chrX 54335491 54335775 -122638365 - AluSc SINE Alu -13 296 1 858 202 0 66 chrX 54336095 54336225 -122637915 + MER45A DNA AcHobo 4 120 -1461 2092 105 14 3 chrX 54336225 54336519 -122637621 - AluSq SINE Alu -16 297 1 858 202 0 66 chrX 54336519 54336571 -122637569 + MER45A DNA AcHobo 120 174 -4 320 285 0 73 chrX 54336949 54337005 -122637135 + L2 LINE L2 3182 3226 -87 273 29 0 0 chrX 54337005 54337039 -122637101 + (TG)n Simple_repeat Simple_repeat 2 35 0 320 285 0 73 chrX 54337039 54337105 -122637035 + L2 LINE L2 3226 3295 -18 183 80 0 0 chrX 54337110 54337135 -122637005 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 496 242 39 13 chrX 54337434 54337587 -122636553 + MIR SINE MIR 35 191 -71 464 216 37 60 chrX 54337715 54337849 -122636291 - MIR SINE MIR -92 170 40 1112 281 146 38 chrX 54338750 54338866 -122635274 + MLT2F LTR ERVL 48 150 -513 1791 67 22 0 chrX 54338866 54339091 -122635049 - MER30 DNA MER1_type 0 230 1 1112 281 146 38 chrX 54339091 54339465 -122634675 + MLT2F LTR ERVL 150 607 -56 2775 20 0 0 chrX 54339465 54339767 -122634373 - AluY SINE Alu -9 302 1 1112 281 146 38 chrX 54339767 54339831 -122634309 + MLT2F LTR ERVL 607 663 0 228 264 264 9 chrX 54340149 54340255 -122633885 - MIR SINE MIR -49 213 81 187 316 68 51 chrX 54340556 54340850 -122633290 + L2 LINE L2 2430 2728 -586 437 141 0 14 chrX 54340892 54340963 -122633177 + MER116 DNA Mariner 3 72 -8 218 214 11 0 chrX 54341174 54341263 -122632877 + CT-rich Low_complexity Low_complexity 2 91 0 234 62 0 0 chrX 54341398 54341430 -122632710 + (TG)n Simple_repeat Simple_repeat 2 33 0 982 269 72 52 chrX 54342071 54342872 -122631268 + L2 LINE L2 2372 3192 -121 497 264 61 0 chrX 54342951 54343099 -122631041 + MIR SINE MIR 73 229 -33 4281 149 41 9 chrX 54343241 54343998 -122630142 + L1MA10 LINE L1 5551 6331 -3 780 226 46 37 chrX 54344192 54344409 -122629731 - L1MEd LINE L1 -5896 223 5 742 278 74 39 chrX 54344422 54344854 -122629286 + L2 LINE L2 2216 2662 -652 1241 261 33 18 chrX 54344931 54345268 -122628872 - MER93a LTR ERV1 0 402 61 577 263 11 34 chrX 54345424 54345599 -122628541 - Charlie8 DNA MER1_type -2168 249 79 861 265 48 4 chrX 54345864 54346094 -122628046 + LTR16C LTR ERVL 252 491 0 729 270 72 16 chrX 54346122 54346426 -122627714 + L2 LINE L2 2928 3248 -65 228 135 0 0 chrX 54347228 54347265 -122626875 + (GA)n Simple_repeat Simple_repeat 2 38 0 1585 176 17 3 chrX 54347580 54347870 -122626270 - L1M4 LINE L1 -1848 4298 4005 1132 234 113 47 chrX 54348047 54348638 -122625502 - L2 LINE L2 -2 3311 2677 815 272 132 13 chrX 54348758 54349069 -122625071 + L2 LINE L2 2707 3057 -256 269 244 78 52 chrX 54349072 54349187 -122624953 + L2 LINE L2 2821 2938 -375 559 223 86 76 chrX 54349385 54349446 -122624694 - L1ME4a LINE L1 -2 6119 6060 3398 143 18 17 chrX 54349446 54350049 -122624091 + L1MB7 LINE L1 5574 6177 -7 559 223 86 76 chrX 54350049 54350301 -122623839 - L1ME4a LINE L1 -61 6060 5803 1911 162 3 9 chrX 54352624 54352939 -122621201 - MLT1A1 LTR MaLR -52 313 1 1382 170 6 109 chrX 54353024 54353371 -122620769 - AluSx SINE Alu -1 311 1 1739 249 47 13 chrX 54353523 54354057 -122620083 + L1MD2 LINE L1 3332 3883 -2263 1456 158 91 8 chrX 54354113 54354378 -122619762 - AluJo SINE Alu -23 289 3 276 183 0 0 chrX 54354379 54354439 -122619701 + L1MD2 LINE L1 4889 4948 -1198 207 139 0 0 chrX 54354470 54354506 -122619634 + (GGA)n Simple_repeat Simple_repeat 2 37 0 3270 174 12 5 chrX 54354519 54355355 -122618785 + L1MD2 LINE L1 4964 5806 -436 197 33 33 0 chrX 54355381 54355411 -122618729 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 42759 42 21 0 chrX 54355411 54361430 -122612710 - L1PA2 LINE L1 -2 6153 2 5206 115 37 8 chrX 54361440 54362198 -122611942 - LTR17 LTR ERV1 0 780 1 2898 165 37 7 chrX 54362198 54362738 -122611402 + L1MD2 LINE L1 5802 6357 -2 1097 303 78 36 chrX 54362738 54363402 -122610738 - L1MEd LINE L1 -5200 919 228 * 2958 218 50 21 chrX 54363373 54364433 -122609707 + L1ME3A LINE L1 4985 6103 -67 2080 125 0 7 chrX 54364434 54364715 -122609425 + AluSx SINE Alu 1 279 -33 225 0 0 0 chrX 54364717 54364742 -122609398 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 1690 209 16 4 chrX 54365255 54365653 -122608487 - L1 LINE L1 -965 5181 4773 19327 167 20 11 chrX 54365684 54370063 -122604077 + L1PA14 LINE L1 5 4761 -2838 2173 115 3 43 chrX 54370063 54370200 -122603940 + AluSx SINE Alu 1 142 -170 2079 110 50 0 chrX 54370200 54370482 -122603658 + AluY SINE Alu 1 296 -15 2173 115 3 43 chrX 54370482 54370667 -122603473 + AluSx SINE Alu 142 310 -2 19327 167 20 11 chrX 54370667 54373533 -122600607 + L1PA14 LINE L1 4761 7599 0 759 45 27 9 chrX 54374065 54374177 -122599963 + (GGAA)n Simple_repeat Simple_repeat 2 115 0 6496 139 99 81 chrX 54374186 54374754 -122599386 + L1MC3 LINE L1 6287 6843 -942 332 43 22 0 chrX 54374754 54374800 -122599340 + (CA)n Simple_repeat Simple_repeat 2 48 0 6496 139 99 81 chrX 54374800 54375022 -122599118 + L1MC3 LINE L1 6843 7060 -725 236 274 21 21 chrX 54375022 54375117 -122599023 + MLT1F1 LTR MaLR 40 134 -433 6496 139 99 81 chrX 54375117 54375702 -122598438 + L1MC3 LINE L1 7060 7783 -2 532 255 18 10 chrX 54375700 54375895 -122598245 - L1MC/D LINE L1 -737 5443 5279 * 26 0 0 0 chrX 54376139 54376165 -122597975 + AT_rich Low_complexity Low_complexity 1 26 0 17532 35 2 0 chrX 54376165 54379019 -122595121 - L1PA4 LINE L1 -3 6152 3298 395 126 0 105 chrX 54379021 54379076 -122595064 - L1M4 LINE L1 -5156 1386 1344 2115 125 17 0 chrX 54379076 54379371 -122594769 - AluSx SINE Alu -12 300 1 395 126 0 105 chrX 54379371 54379410 -122594730 - L1M4 LINE L1 -5198 1344 1302 4282 148 53 56 chrX 54379431 54379477 -122594663 - L1MB3 LINE L1 -16 6167 6122 1625 150 68 17 chrX 54379477 54379771 -122594369 - AluJo SINE Alu -3 309 1 4282 148 53 56 chrX 54379771 54379794 -122594346 - L1MB3 LINE L1 -61 6122 6100 1105 197 32 105 chrX 54379794 54380165 -122593975 + MER2 DNA MER2_type 1 344 0 4282 148 53 56 chrX 54380165 54380944 -122593196 - L1MB3 LINE L1 -83 6100 5320 2024 153 0 0 chrX 54380944 54381244 -122592896 - AluSx SINE Alu -12 300 1 4282 148 53 56 chrX 54381244 54381255 -122592885 - L1MB3 LINE L1 -863 5320 5310 2257 116 0 0 chrX 54381255 54381557 -122592583 - AluSx SINE Alu -10 302 1 4282 148 53 56 chrX 54381557 54381683 -122592457 - L1MB3 LINE L1 -873 5310 5207 1000 122 18 37 chrX 54381813 54381977 -122592163 + L1PA14 LINE L1 6001 6161 0 21 0 0 0 chrX 54381977 54381998 -122592142 + AT_rich Low_complexity Low_complexity 1 21 0 1299 133 44 0 chrX 54382018 54382243 -122591897 + L1M3 LINE L1 5256 5490 -678 15966 37 0 0 chrX 54382258 54384859 -122589281 + L1PA3 LINE L1 3557 6159 0 11003 60 8 1 chrX 54384861 54386267 -122587873 - L1P LINE L1 -795 5351 3936 2129 60 0 11 chrX 54386270 54386552 -122587588 + L1P LINE L1 3647 3925 -2221 307 217 17 42 chrX 54386989 54387109 -122587031 + T-rich Low_complexity Low_complexity 2 118 0 26 0 0 0 chrX 54387135 54387161 -122586979 + AT_rich Low_complexity Low_complexity 1 26 0 828 128 37 43 chrX 54387165 54387329 -122586811 - L1MA6 LINE L1 -10 6290 6128 2598 45 0 10 chrX 54387330 54387642 -122586498 - AluY SINE Alu -2 309 1 4881 158 26 48 chrX 54387646 54389183 -122584957 - L1MA6 LINE L1 0 6300 4785 2059 224 130 17 chrX 54389340 54390001 -122584139 - L1MDb LINE L1 -3539 2541 1736 2653 216 18 30 chrX 54390001 54390566 -122583574 - MER74A LTR ERVL 0 558 1 2059 224 130 17 chrX 54390566 54390866 -122583274 - L1MDb LINE L1 -4344 1736 1471 188 35 35 0 chrX 54390866 54390895 -122583245 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 37676 39 25 2 chrX 54390895 54396294 -122577846 - L1PA3 LINE L1 -18 6137 611 701 70 0 0 chrX 54396294 54396380 -122577760 - L1PA3 LINE L1 -6060 86 1 2554 185 85 48 chrX 54396383 54397438 -122576702 - L1MDb LINE L1 -4604 1476 374 533 252 30 94 chrX 54397674 54397908 -122576232 - L1MDb LINE L1 -5849 221 3 435 308 98 52 chrX 54397931 54398278 -122575862 + L2 LINE L2 2596 2958 -356 572 220 50 38 chrX 54398328 54398487 -122575653 - MIR SINE MIR 0 262 102 2683 167 32 2 chrX 54398765 54399208 -122574932 + MSTB2 LTR MaLR 1 456 -1 26 0 0 0 chrX 54399354 54399380 -122574760 + AT_rich Low_complexity Low_complexity 1 26 0 431 211 54 165 chrX 54399496 54399757 -122574383 + MLT1L LTR MaLR 378 609 -6 673 311 95 48 chrX 54399829 54399893 -122574247 - L2 LINE L2 -2696 618 558 1954 147 23 62 chrX 54399893 54400281 -122573859 + THE1C LTR MaLR 3 375 0 673 311 95 48 chrX 54400281 54400615 -122573525 - L2 LINE L2 -2756 558 201 562 238 88 7 chrX 54400898 54401045 -122573095 + LTR33A LTR ERVL 327 485 -38 2111 115 3 16 chrX 54401045 54401349 -122572791 + AluSq SINE Alu 1 300 -13 1042 273 72 42 chrX 54402254 54402736 -122571404 + MLT1K LTR MaLR 62 582 -6 362 330 84 26 chrX 54403194 54403385 -122570755 + MIR SINE MIR 2 203 -59 304 253 95 0 chrX 54403368 54403463 -122570677 + L2 LINE L2 2587 2690 -624 * 680 228 7 0 chrX 54403561 54403697 -122570443 - L1ME1 LINE L1 -52 6114 5978 655 270 129 60 chrX 54403699 54404293 -122569847 + L2 LINE L2 2684 3313 0 255 280 0 27 chrX 54404279 54404354 -122569786 + MIR SINE MIR 184 256 -6 * 3289 193 37 36 chrX 54404380 54404545 -122569595 + L1 LINE L1 3987 4150 -1996 243 0 0 0 chrX 54404545 54404572 -122569568 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 3289 193 37 36 chrX 54404572 54404790 -122569350 + L1 LINE L1 4150 4366 -1780 2425 86 0 0 chrX 54404790 54405082 -122569058 + AluSp SINE Alu 3 294 -19 3289 193 37 36 chrX 54405082 54405423 -122568717 + L1 LINE L1 4366 4716 -1430 1734 165 14 7 chrX 54405423 54405714 -122568426 - AluJb SINE Alu -19 293 1 3289 193 37 36 chrX 54405714 54405791 -122568349 + L1 LINE L1 4716 4791 -1355 400 327 0 30 chrX 54405893 54406058 -122568082 - MLT1J LTR MaLR -64 447 288 628 227 87 12 chrX 54406110 54406282 -122567858 - MLT1J LTR MaLR -317 194 10 270 0 0 0 chrX 54406578 54406608 -122567532 + (CA)n Simple_repeat Simple_repeat 2 31 0 487 295 94 58 chrX 54406643 54407006 -122567134 - L2 LINE L2 -67 3246 2871 2341 105 0 0 chrX 54407124 54407419 -122566721 - AluSg SINE Alu -15 295 1 450 165 83 50 chrX 54407788 54407909 -122566231 + MLT1H1 LTR MaLR 304 428 -127 8004 207 57 29 chrX 54408036 54410369 -122563771 + L1MC/D LINE L1 3077 5475 -743 224 388 15 20 chrX 54410666 54410867 -122563273 - L2 LINE L2 -213 3059 2860 391 271 66 33 chrX 54410874 54411025 -122563115 - L1ME1 LINE L1 -2048 5760 5605 647 230 0 105 chrX 54412558 54412622 -122561518 + MER5B DNA MER1_type 5 74 -104 1673 190 20 0 chrX 54412622 54412922 -122561218 + AluJb SINE Alu 1 306 -6 647 230 0 105 chrX 54412922 54413048 -122561092 + MER5B DNA MER1_type 74 175 -3 183 328 0 16 chrX 54413059 54413123 -122561017 - MIR3 SINE MIR -145 63 1 271 338 15 44 chrX 54414037 54414173 -122559967 - MIR SINE MIR -59 149 18 740 282 103 22 chrX 54414750 54415069 -122559071 - L3 LINE CR1 -18 1559 1215 1012 328 68 57 chrX 54415070 54415230 -122558910 - L2 LINE L2 -2 3270 3113 2699 123 3 0 chrX 54415230 54415595 -122558545 + MER47A DNA MER2_type 1 366 0 1012 328 68 57 chrX 54415595 54416481 -122557659 - L2 LINE L2 -159 3113 2224 1460 222 31 23 chrX 54416500 54416851 -122557289 + MLT1I LTR MaLR 51 404 -5 430 334 132 21 chrX 54416906 54417232 -122556908 - L2 LINE L2 -1177 2137 1776 * 682 302 122 21 chrX 54417195 54417483 -122556657 - L3 LINE CR1 -322 1255 939 201 375 45 11 chrX 54417589 54417677 -122556463 + L2 LINE L2 3146 3236 -36 1419 224 72 35 chrX 54417750 54418295 -122555845 + HAL1 LINE L1 1897 2461 -46 270 275 0 12 chrX 54418353 54418433 -122555707 + (TA)n Simple_repeat Simple_repeat 1 79 0 539 202 0 8 chrX 54418433 54418552 -122555588 + HAL1 LINE L1 2285 2402 -105 242 167 0 37 chrX 54418568 54418622 -122555518 + L1MCa LINE L1 2006 2057 -4369 772 196 55 33 chrX 54419479 54419685 -122554455 - MIR SINE MIR 0 262 56 434 273 76 84 chrX 54419681 54419919 -122554221 - MIR SINE MIR -8 254 19 * 198 71 0 0 chrX 54420194 54420222 -122553918 + (CA)n Simple_repeat Simple_repeat 2 29 0 288 208 125 0 chrX 54420575 54420647 -122553493 + MIR SINE MIR 31 111 -97 286 213 16 0 chrX 54420662 54420723 -122553417 + MIR SINE MIR 66 127 -81 502 252 9 0 chrX 54420803 54420914 -122553226 + MIR SINE MIR 52 163 -99 645 272 47 0 chrX 54421025 54421194 -122552946 + MIR SINE MIR 44 220 -42 2091 131 3 6 chrX 54421409 54421721 -122552419 + AluSx SINE Alu 1 311 -1 6183 80 10 23 chrX 54421832 54423470 -122550670 - SVA Other Other -723 1386 2 284 0 0 27 chrX 54423476 54423513 -122550627 + (GGGAGA)n Simple_repeat Simple_repeat 2 37 0 311 250 148 19 chrX 54423610 54423718 -122550422 + MER5A DNA MER1_type 68 189 0 8945 150 33 43 chrX 54423937 54425640 -122548500 + L1MCa LINE L1 1 1686 -4740 1991 239 140 14 chrX 54425658 54426435 -122547705 + L1M3e LINE L1 1 875 -6155 1764 151 6 10 chrX 54426469 54426781 -122547359 + L1 LINE L1 4414 4724 -1422 1600 85 0 5 chrX 54426781 54427021 -122547119 - pTR5 LTR ERV1 -2047 391 51 322 247 0 0 chrX 54427023 54427104 -122547036 - LTR30 LTR ERV1 -98 624 544 4092 59 10 18 chrX 54427104 54427791 -122546349 - pTR5 LTR ERV1 -413 2025 1194 302 316 48 54 chrX 54428007 54428249 -122545891 - L2 LINE L2 -264 3008 2773 * 771 289 12 12 chrX 54428243 54428485 -122545655 + MIR SINE MIR 15 256 -6 198 103 0 0 chrX 54429170 54429199 -122544941 + (CA)n Simple_repeat Simple_repeat 2 30 0 4047 184 13 20 chrX 54430041 54430559 -122543581 + L1MD2 LINE L1 5614 6127 -232 201 74 0 0 chrX 54430559 54430586 -122543554 + (CA)n Simple_repeat Simple_repeat 2 28 0 4047 184 13 20 chrX 54430586 54430818 -122543322 + L1MD2 LINE L1 6127 6359 0 2449 77 53 3 chrX 54431000 54431338 -122542802 + THE1A LTR MaLR 1 355 0 11592 92 5 4 chrX 54431338 54432917 -122541223 + THE1A-int LTR MaLR 1 1580 0 2496 107 6 3 chrX 54432917 54433271 -122540869 + THE1A LTR MaLR 1 355 0 1115 239 71 60 chrX 54433371 54433816 -122540324 + HAL1b LINE L1 77 515 -833 2350 70 0 3 chrX 54433816 54434114 -122540026 - AluY SINE Alu -14 297 1 1115 239 71 60 chrX 54434114 54434765 -122539375 + HAL1b LINE L1 515 1295 -53 328 345 34 17 chrX 54435149 54435268 -122538872 - L2 LINE L2 -15 3257 3137 197 284 125 34 chrX 54435539 54435627 -122538513 - L2 LINE L2 -8 3264 3169 675 269 57 0 chrX 54435649 54435842 -122538298 - MIR SINE MIR -10 252 49 237 351 32 11 chrX 54436671 54436765 -122537375 - L2 LINE L2 -7 3306 3211 448 202 8 124 chrX 54436765 54436894 -122537246 + MER81 DNA DNA 1 114 0 647 353 40 23 chrX 54437066 54437366 -122536774 - L2 LINE L2 0 3272 2968 371 283 8 8 chrX 54437587 54437707 -122536433 + MLT1J2 LTR MaLR 1 120 -330 540 295 19 6 chrX 54437804 54437960 -122536180 + MLT1J2 LTR MaLR 280 437 -13 277 323 138 15 chrX 54438035 54438165 -122535975 + L2 LINE L2 3127 3272 0 228 314 0 14 chrX 54439369 54439439 -122534701 + L2 LINE L2 3204 3272 0 513 277 54 27 chrX 54439589 54439773 -122534367 - MER117 DNA MER1_type -5 192 4 332 358 14 51 chrX 54440010 54440225 -122533915 + L2 LINE L2 2905 3111 -161 235 241 19 0 chrX 54440218 54440272 -122533868 - L2 LINE L2 -1 3312 3258 * 1538 204 29 24 chrX 54440478 54440895 -122533245 + LTR52 LTR ERVL 1 419 -2 4863 174 30 41 chrX 54440896 54441729 -122532411 + LTR52-int LTR ERVL 1 823 -2733 2392 92 3 0 chrX 54441729 54442033 -122532107 - AluSq SINE Alu -8 305 1 4863 174 30 41 chrX 54442033 54442201 -122531939 + LTR52-int LTR ERVL 823 991 -2565 2515 75 7 0 chrX 54442220 54442528 -122531612 - AluSg SINE Alu 0 310 1 3376 213 40 78 chrX 54442587 54442987 -122531153 + LTR52-int LTR ERVL 1026 1440 -2116 1182 149 147 69 chrX 54442987 54443335 -122530805 + THE1C LTR MaLR 1 375 0 3376 213 40 78 chrX 54443335 54443908 -122530232 + LTR52-int LTR ERVL 1440 1962 -1594 938 259 147 38 chrX 54443913 54444260 -122529880 + MER77 LTR ERV1 127 511 -94 521 303 82 6 chrX 54444502 54444675 -122529465 - MIR SINE MIR -62 146 8 272 266 38 13 chrX 54444781 54444860 -122529280 + MIR3 SINE MIR 116 196 -12 746 321 43 66 chrX 54445493 54446060 -122528080 + L2 LINE L2 2714 3268 -4 479 318 114 1 chrX 54446335 54446562 -122527578 + MIR SINE MIR 3 250 -12 198 256 219 12 chrX 54447135 54447217 -122526923 - L2 LINE L2 0 3313 3215 368 258 94 39 chrX 54447433 54447561 -122526579 + MIR3 SINE MIR 6 140 -68 740 343 69 11 chrX 54447750 54448112 -122526028 - L3b LINE CR1 -8 1575 1193 4358 110 15 5 chrX 54448250 54448913 -122525227 + L1MA5A LINE L1 5559 6228 -69 322 51 0 0 chrX 54448922 54448961 -122525179 + HSMAR1 DNA Mariner 11 49 -1238 294 225 141 0 chrX 54449839 54449910 -122524230 - MIR SINE MIR -98 110 30 215 191 16 16 chrX 54450119 54450182 -122523958 + (TA)n Simple_repeat Simple_repeat 1 63 0 1490 262 61 25 chrX 54450183 54450999 -122523141 - L1ME3A LINE L1 -209 5961 5129 1561 175 48 0 chrX 54451051 54451320 -122522820 + AluJo SINE Alu 12 293 -19 6109 136 21 34 chrX 54451985 54453674 -122520466 - L1MA4A LINE L1 -13 6992 5325 * 10981 182 39 27 chrX 54453666 54456849 -122517291 - L1MA4A LINE L1 -2942 3906 683 275 261 108 25 chrX 54456988 54457145 -122516995 + L1ME LINE L1 5567 5736 -385 1606 149 26 42 chrX 54457190 54457498 -122516642 + AluJo SINE Alu 9 311 -1 823 298 133 10 chrX 54457535 54457934 -122516206 + L2 LINE L2 2258 2705 -609 714 246 15 0 chrX 54457944 54458139 -122516001 + L1MD3 LINE L1 7790 7987 -8 181 371 199 32 chrX 54458160 54458381 -122515759 + L2 LINE L2 2715 2972 -342 181 309 11 96 chrX 54458354 54458448 -122515692 + L2 LINE L2 2943 3028 -244 202 176 0 0 chrX 54458458 54458492 -122515648 + L2 LINE L2 3239 3272 0 231 244 39 115 chrX 54458655 54458733 -122515407 + LTR67 LTR ERVL 76 147 -410 388 188 58 0 chrX 54458831 54458900 -122515240 + MER68 LTR ERV1 1 73 -489 222 116 0 0 chrX 54458918 54458961 -122515179 + (A)n Simple_repeat Simple_repeat 1 43 0 788 249 48 31 chrX 54458969 54459198 -122514942 + MLT1L LTR MaLR 381 613 -2 6127 95 3 13 chrX 54459357 54460542 -122513598 + L1PB2 LINE L1 4970 6149 -2 2193 115 0 0 chrX 54460567 54460862 -122513278 + AluSg SINE Alu 2 296 -14 664 291 72 8 chrX 54461005 54461242 -122512898 + MIR SINE MIR 11 262 0 371 183 0 67 chrX 54461343 54461447 -122512693 + L1MC5 LINE L1 7817 7913 -48 629 26 0 0 chrX 54462208 54462285 -122511855 + L1PA4 LINE L1 6071 6147 -8 42717 35 22 2 chrX 54463189 54469221 -122504919 + L1PA3 LINE L1 2 6155 0 234 0 0 0 chrX 54470115 54470141 -122503999 + (T)n Simple_repeat Simple_repeat 1 26 0 1153 178 0 48 chrX 54470931 54471092 -122503048 - MER58A DNA MER1_type -2203 217 67 3415 165 26 24 chrX 54471092 54471588 -122502552 + L1MB8 LINE L1 5482 5981 -197 2146 131 128 10 chrX 54471588 54471971 -122502169 - MSTA LTR MaLR 0 428 1 3415 165 26 24 chrX 54471971 54472170 -122501970 + L1MB8 LINE L1 5981 6178 0 1153 178 0 48 chrX 54472170 54472216 -122501924 - MER58A DNA MER1_type -2353 67 20 203 167 0 0 chrX 54472399 54472435 -122501705 + (CATATA)n Simple_repeat Simple_repeat 3 38 0 3637 157 7 55 chrX 54472773 54473487 -122500653 - L1MB5 LINE L1 -9 6165 5486 791 207 24 30 chrX 54473487 54473656 -122500484 + MER58B DNA MER1_type 174 341 0 315 0 0 0 chrX 54475328 54475363 -122498777 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2386 112 28 6 chrX 54475878 54476234 -122497906 - THE1B LTR MaLR 0 364 1 311 70 0 0 chrX 54476381 54476424 -122497716 + L1P LINE L1 5149 5191 -955 257 318 15 0 chrX 54476620 54476752 -122497388 + Charlie1 DNA MER1_type 2330 2463 -298 2591 264 19 13 chrX 54477943 54478617 -122495523 + L1MD1 LINE L1 109 786 -5610 * 4052 165 52 71 chrX 54478606 54479605 -122494535 + L1MB4 LINE L1 5151 6167 -13 2471 133 29 0 chrX 54479605 54480017 -122494123 + L1PA16 LINE L1 5734 6157 -9 21 0 0 0 chrX 54480017 54480038 -122494102 + AT_rich Low_complexity Low_complexity 1 21 0 4052 165 52 71 chrX 54480038 54480077 -122494063 + L1MB4 LINE L1 6165 6179 -1 818 199 40 78 chrX 54480065 54480248 -122493892 + L1MD1 LINE L1 3804 3971 -2244 * 1831 144 17 27 chrX 54480248 54480540 -122493600 + AluJb SINE Alu 1 289 -23 818 199 40 78 chrX 54480540 54480677 -122493463 + L1MD1 LINE L1 3971 4112 -2103 301 277 0 0 chrX 54480722 54480816 -122493324 + L1MD1 LINE L1 4844 4937 -1278 * 1435 208 62 6 chrX 54480809 54481150 -122492990 - L1MB7 LINE L1 -8 6176 5817 2100 92 0 11 chrX 54481150 54481464 -122492676 + AluSc SINE Alu 1 311 0 3436 186 56 10 chrX 54481481 54482574 -122491566 + L1MD1 LINE L1 4919 6055 -256 462 268 8 0 chrX 54482646 54482773 -122491367 + L1ME1 LINE L1 1676 1803 -4593 1430 207 31 16 chrX 54482798 54483179 -122490961 + L1ME1 LINE L1 2051 2437 -3959 2166 216 56 10 chrX 54483181 54483770 -122490370 + L1ME1 LINE L1 2562 3177 -3038 2969 226 54 22 chrX 54483782 54485283 -122488857 + L1ME1 LINE L1 4687 6231 -4 679 187 26 39 chrX 54485380 54485535 -122488605 + L1MDa LINE L1 282 434 -6106 4670 103 9 13 chrX 54485538 54486225 -122487915 + L1PA13 LINE L1 5478 6161 -2 518 209 8 15 chrX 54486243 54486377 -122487763 + L1MDa LINE L1 1295 1427 -5113 1773 192 25 103 chrX 54486379 54486905 -122487235 + L1MD1 LINE L1 5757 6241 -1 306 179 18 0 chrX 54487227 54487283 -122486857 + L2 LINE L2 3257 3313 0 2287 119 0 0 chrX 54487965 54488276 -122485864 + AluSx SINE Alu 1 311 -1 314 284 121 9 chrX 54491021 54491137 -122483003 + MIR SINE MIR 122 250 -12 198 0 0 0 chrX 54492288 54492310 -122481830 + (T)n Simple_repeat Simple_repeat 1 22 0 180 214 125 0 chrX 54492861 54492917 -122481223 + L2 LINE L2 3179 3241 -72 2273 99 0 7 chrX 54493652 54493956 -122480184 - AluSq SINE Alu -11 302 1 331 331 84 12 chrX 54495815 54495981 -122478159 + L3b LINE CR1 1352 1529 -54 40059 67 11 10 chrX 54496321 54502329 -122471811 + L1PA5 LINE L1 2 6016 -138 189 0 0 0 chrX 54502329 54502350 -122471790 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 40059 67 11 10 chrX 54502350 54502488 -122471652 + L1PA5 LINE L1 6016 6152 -2 249 33 0 0 chrX 54502558 54502588 -122471552 + (A)n Simple_repeat Simple_repeat 1 30 0 5530 10 0 0 chrX 54502947 54503567 -122470573 + L1PA2 LINE L1 5533 6152 -3 942 240 64 9 chrX 54503640 54503873 -122470267 - MIR SINE MIR -13 249 4 1195 304 89 23 chrX 54504693 54505487 -122468653 + L2 LINE L2 2419 3262 -51 210 267 0 0 chrX 54506321 54506411 -122467729 + GA-rich Low_complexity Low_complexity 1 90 0 256 224 15 30 chrX 54506426 54506493 -122467647 + GA-rich Low_complexity Low_complexity 1 66 0 2069 139 3 0 chrX 54506499 54506802 -122467338 - AluSx SINE Alu -8 304 1 296 287 145 17 chrX 54507560 54507750 -122466390 + MIR SINE MIR 3 212 -50 550 296 42 52 chrX 54508104 54508317 -122465823 + MIR SINE MIR 23 233 -29 186 301 233 0 chrX 54508964 54509067 -122465073 + MIR3 SINE MIR 76 202 -6 252 86 0 0 chrX 54509231 54509266 -122464874 + (TAG)n Simple_repeat Simple_repeat 2 36 0 454 291 126 19 chrX 54509294 54509500 -122464640 - MIR SINE MIR 0 262 35 735 265 43 9 chrX 54509552 54509782 -122464358 + L1MEc LINE L1 255 492 -6115 6423 231 37 62 chrX 54509873 54512470 -122461670 + L1M4b LINE L1 11 2723 -4415 303 240 66 91 chrX 54512471 54512713 -122461427 + L1MEc LINE L1 1849 2124 -4342 4475 223 35 6 chrX 54512716 54514147 -122459993 + L1MEc LINE L1 2103 3578 -2848 3056 263 109 8 chrX 54514142 54515406 -122458734 + L1MEc LINE L1 1216 2607 -4000 * 2233 104 3 3 chrX 54515436 54515733 -122458407 + AluSx SINE Alu 1 297 -15 425 225 28 35 chrX 54515735 54515877 -122458263 + L1MEc LINE L1 24 164 -5906 1937 144 33 0 chrX 54515879 54516178 -122457962 + AluSx SINE Alu 1 309 -3 2306 83 7 0 chrX 54516193 54516483 -122457657 - AluSp SINE Alu -21 292 1 576 292 71 38 chrX 54516741 54516981 -122457159 + L1MEc LINE L1 243 490 -5580 711 195 6 32 chrX 54517050 54517223 -122456917 - L1MB2 LINE L1 -258 5913 5753 2142 138 0 31 chrX 54517329 54517684 -122456456 - L1M3 LINE L1 -378 5793 5450 2707 234 66 36 chrX 54517692 54518646 -122455494 + L1MEc LINE L1 2692 3755 -2325 7998 48 1 1 chrX 54518646 54520407 -122453733 + L1PA5 LINE L1 4394 6153 -1 2707 234 66 36 chrX 54520407 54520714 -122453426 + L1MEc LINE L1 3755 4051 -2029 1021 271 99 22 chrX 54520712 54520776 -122453364 + L1M4 LINE L1 2978 3036 -3110 * 2261 100 3 3 chrX 54520776 54521076 -122453064 + AluSx SINE Alu 11 310 -2 1021 271 99 22 chrX 54521076 54521565 -122452575 + L1M4 LINE L1 3036 3574 -2572 392 218 150 30 chrX 54522212 54522345 -122451795 - L2 LINE L2 0 3313 3165 836 158 0 15 chrX 54522349 54522482 -122451658 + AluJo SINE Alu 6 136 -176 1310 258 147 21 chrX 54522484 54523130 -122451010 - L2 LINE L2 -136 3177 2470 996 282 64 7 chrX 54523130 54523428 -122450712 - L2 LINE L2 -1693 1621 1307 429 355 190 14 chrX 54523727 54524250 -122449890 + L2 LINE L2 2553 3206 -66 2222 105 3 0 chrX 54524250 54524545 -122449595 - AluSx SINE Alu -16 296 1 429 355 190 14 chrX 54524545 54524620 -122449520 + L2 LINE L2 3206 3266 -6 1867 156 12 35 chrX 54524861 54525073 -122449067 + MLT1A1 LTR MaLR 24 226 -139 3104 154 179 21 chrX 54525073 54525786 -122448354 + LTR1B LTR ERV1 1 826 0 1867 156 12 35 chrX 54525786 54525919 -122448221 + MLT1A1 LTR MaLR 226 361 -4 325 332 29 39 chrX 54526563 54526771 -122447369 - L1MEc LINE L1 -6155 241 36 302 284 205 16 chrX 54526826 54526953 -122447187 - L2 LINE L2 0 3272 3122 689 286 32 60 chrX 54529547 54529799 -122444341 - MIR SINE MIR -1 261 17 2118 83 0 4 chrX 54530037 54530314 -122443826 + AluY SINE Alu 36 311 0 183 297 125 55 chrX 54530476 54530604 -122443536 + L3 LINE CR1 134 270 -1307 5765 204 46 43 chrX 54530604 54532329 -122441811 + L1MD2 LINE L1 1 1739 -4667 3131 108 9 9 chrX 54532370 54532460 -122441680 + L1PB3 LINE L1 5693 5782 -372 2228 120 0 0 chrX 54532460 54532760 -122441380 + AluSg SINE Alu 1 300 -10 252 0 0 0 chrX 54532764 54532792 -122441348 + (TG)n Simple_repeat Simple_repeat 2 29 0 3131 108 9 9 chrX 54532792 54533151 -122440989 + L1PB3 LINE L1 5784 6147 -7 6635 197 51 42 chrX 54533233 54534226 -122439914 + L1MD2 LINE L1 3431 4413 -2206 225 0 0 0 chrX 54534226 54534251 -122439889 + (GAAA)n Simple_repeat Simple_repeat 4 28 0 6635 197 51 42 chrX 54534251 54534341 -122439799 + L1MD2 LINE L1 4413 4501 -2118 2018 119 131 50 chrX 54534341 54534689 -122439451 - MSTA LTR MaLR 0 428 43 2424 91 0 0 chrX 54534689 54534987 -122439153 + AluY SINE Alu 1 298 -13 2018 119 131 50 chrX 54534987 54535034 -122439106 - MSTA LTR MaLR -385 43 1 6635 197 51 42 chrX 54535034 54535230 -122438910 + L1MD2 LINE L1 4501 4694 -1925 7805 157 27 6 chrX 54535230 54537422 -122436718 + L1PA13 LINE L1 3942 6159 -4 6635 197 51 42 chrX 54537422 54539285 -122434855 + L1MD2 LINE L1 4694 6591 -28 6812 25 1 2 chrX 54539297 54540135 -122434005 - L1PA4 LINE L1 -15 6140 5304 229 256 11 11 chrX 54540141 54540231 -122433909 + L1M4 LINE L1 4302 4391 -1755 19072 30 2 1 chrX 54540240 54542663 -122431477 + L1P LINE L1 2879 5305 -841 511 252 84 0 chrX 54542716 54542835 -122431305 + FLAM_A SINE Alu 3 131 -2 501 344 117 42 chrX 54542841 54543382 -122430758 + L3 LINE CR1 285 865 -712 643 306 77 19 chrX 54543450 54543761 -122430379 + L2 LINE L2 2863 3191 -122 762 244 12 0 chrX 54543815 54543983 -122430157 - MER69A DNA AcHobo -6 171 2 981 188 141 32 chrX 54544034 54544397 -122429743 + MER57A LTR ERV1 41 403 0 621 167 15 15 chrX 54545297 54545429 -122428711 + MER57A-int LTR ERV1 298 429 -4507 2866 109 74 37 chrX 54545517 54546108 -122428032 + MER4B LTR ERV1 1 779 0 325 232 0 0 chrX 54546225 54546294 -122427846 + MER57A-int LTR ERV1 1235 1303 -3568 1063 232 22 15 chrX 54546383 54546650 -122427490 + MER34C LTR ERV1 159 427 -158 1023 204 70 18 chrX 54546710 54546994 -122427146 + LTR23-int LTR ERV1 4166 4464 -2294 237 250 256 33 chrX 54547064 54547244 -122426896 - LTR48B LTR ERV1 -304 340 121 2401 92 3 9 chrX 54547254 54547569 -122426571 - AluSq SINE Alu 0 313 1 317 155 10 144 chrX 54547574 54547671 -122426469 - MER34 LTR ERV1 -458 84 1 408 214 32 32 chrX 54547673 54547827 -122426313 + LTR23-int LTR ERV1 1743 1896 -3227 323 119 0 34 chrX 54547827 54547886 -122426254 - MER44D DNA MER2_type 0 609 553 2463 100 61 90 chrX 54547910 54548493 -122425647 + MER4E LTR ERV1 46 777 -2 1009 142 33 0 chrX 54548493 54548675 -122425465 - MER44D DNA MER2_type -50 559 372 2563 108 34 5 chrX 54548677 54549064 -122425076 + MER48 LTR ERV1 1 398 0 29352 67 14 2 chrX 54549064 54553144 -122420996 + HERVH48 LTR ERV1 1 4128 -2526 14685 58 14 5 chrX 54553126 54555085 -122419055 + HERVH48 LTR ERV1 4679 6654 0 * 2519 124 31 5 chrX 54555085 54555473 -122418667 + MER48 LTR ERV1 1 398 0 499 174 0 12 chrX 54555474 54555560 -122418580 - MER44D DNA MER2_type -226 383 29 571 228 73 79 chrX 54555572 54556255 -122417885 + MER57-int LTR ERV1 1552 2539 -2495 2308 105 3 0 chrX 54556255 54556550 -122417590 - AluSq SINE Alu -17 296 1 571 228 73 79 chrX 54556550 54556582 -122417558 + MER57-int LTR ERV1 2539 2570 -2464 * 3150 207 76 102 chrX 54556572 54556701 -122417439 + MER57-int LTR ERV1 2089 2220 -5102 2113 105 33 23 chrX 54556701 54557007 -122417133 + AluSg SINE Alu 1 309 -1 3150 207 76 102 chrX 54557007 54557222 -122416918 + MER57-int LTR ERV1 2220 2439 -4883 1783 141 0 0 chrX 54557222 54557470 -122416670 - AluSx SINE Alu -64 248 1 3150 207 76 102 chrX 54557470 54558893 -122415247 + MER57-int LTR ERV1 2439 5821 -1501 397 164 0 0 chrX 54559278 54559345 -122414795 + MER57A LTR ERV1 313 379 -24 910 191 96 10 chrX 54559353 54559552 -122414588 - U3 snRNA snRNA -1 216 1 258 159 0 0 chrX 54559576 54559620 -122414520 + L2 LINE L2 3269 3312 -1 375 315 108 7 chrX 54559839 54560017 -122414123 - MIR SINE MIR -25 237 40 21 0 0 0 chrX 54560609 54560630 -122413510 + AT_rich Low_complexity Low_complexity 1 21 0 499 290 32 48 chrX 54561178 54561364 -122412776 - MIR SINE MIR -7 255 73 5539 192 50 84 chrX 54561436 54562873 -122411267 + L1M4 LINE L1 3205 4690 -1456 1641 62 9 40 chrX 54562873 54563098 -122411042 + AluSq SINE Alu 1 218 -95 896 81 0 16 chrX 54563099 54563205 -122410935 + AluSg/x SINE Alu 186 291 -19 694 12 0 0 chrX 54563205 54563289 -122410851 + L1PA3 LINE L1 6071 6154 -1 896 81 0 16 chrX 54563289 54563305 -122410835 + AluSg/x SINE Alu 291 306 -4 5539 192 50 84 chrX 54563305 54563591 -122410549 + L1M4 LINE L1 4689 4988 -1158 2101 153 0 0 chrX 54563807 54564107 -122410033 + AluSx SINE Alu 1 300 -12 515 218 153 0 chrX 54564498 54564668 -122409472 + LTR16A LTR ERVL 249 444 -6 23 0 0 0 chrX 54564759 54564782 -122409358 + AT_rich Low_complexity Low_complexity 1 23 0 782 162 0 0 chrX 54564782 54564936 -122409204 + L1M4 LINE L1 4992 5145 -1001 765 177 19 0 chrX 54564951 54565109 -122409031 + L1MB7 LINE L1 4405 4565 -1581 4428 153 47 14 chrX 54565135 54566090 -122408050 + L1MB7 LINE L1 5195 6180 -4 636 179 29 104 chrX 54566090 54566211 -122407929 + Charlie1 DNA MER1_type 1450 1579 -1182 2078 98 44 0 chrX 54566211 54566486 -122407654 + AluSq SINE Alu 1 287 -26 207 0 0 0 chrX 54566489 54566512 -122407628 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 636 179 29 104 chrX 54566512 54566559 -122407581 + Charlie1 DNA MER1_type 1581 1609 -1152 231 93 93 0 chrX 54566576 54566630 -122407510 + Charlie1 DNA MER1_type 2562 2620 -141 375 305 55 23 chrX 54568764 54568892 -122405248 - L2 LINE L2 0 3272 3141 627 184 0 95 chrX 54569146 54569293 -122404847 - L2 LINE L2 -5 3308 3176 731 251 73 32 chrX 54569315 54569562 -122404578 - MIR SINE MIR 0 262 6 40292 35 24 1 chrX 54569659 54575678 -122398462 + L1PA3 LINE L1 1 6153 -2 197 383 26 26 chrX 54575678 54575793 -122398347 - L2 LINE L2 -458 2856 2742 294 164 0 0 chrX 54575968 54576023 -122398117 + (CA)n Simple_repeat Simple_repeat 2 56 0 2200 233 52 22 chrX 54576027 54576900 -122397240 + L2 LINE L2 2418 3313 0 337 321 230 17 chrX 54576963 54577229 -122396911 - L2 LINE L2 -808 2506 2298 1425 203 37 27 chrX 54577229 54577525 -122396615 + AluJo SINE Alu 3 301 -11 337 321 230 17 chrX 54577525 54577862 -122396278 - L2 LINE L2 -1016 2298 1774 421 300 30 68 chrX 54577869 54578106 -122396034 + L1MC4a LINE L1 5602 5829 -1979 337 303 64 9 chrX 54578162 54578271 -122395869 - L2 LINE L2 0 3313 3199 405 0 0 0 chrX 54578360 54578405 -122395735 + (TAGA)n Simple_repeat Simple_repeat 3 47 0 775 330 43 63 chrX 54579010 54579611 -122394529 + L2 LINE L2 714 1325 -1989 2417 61 0 3 chrX 54579611 54579908 -122394232 - AluY SINE Alu -15 296 1 1036 41 0 0 chrX 54579908 54580029 -122394111 - 5S rRNA rRNA 0 121 1 775 330 43 63 chrX 54580029 54580141 -122393999 + L2 LINE L2 1323 1414 -1900 241 328 90 25 chrX 54580442 54580564 -122393576 - L2 LINE L2 0 3272 3143 993 214 0 32 chrX 54580643 54580895 -122393245 + L1MA9 LINE L1 2 245 -6923 12650 216 26 25 chrX 54580908 54582605 -122391535 + L1MA9 LINE L1 1376 3071 -4262 1304 155 25 4 chrX 54582605 54582844 -122391296 + L1PA16 LINE L1 5921 6164 -2 12650 216 26 25 chrX 54582844 54583643 -122390497 + L1MA9 LINE L1 3071 3868 -3465 2005 125 29 0 chrX 54583643 54583923 -122390217 + AluSg SINE Alu 1 288 -22 12650 216 26 25 chrX 54583923 54584426 -122389714 + L1MA9 LINE L1 3868 4369 -2964 2295 163 29 3 chrX 54584426 54584812 -122389328 + MSTD LTR MaLR 1 396 0 12650 216 26 25 chrX 54584812 54585096 -122389044 + L1MA9 LINE L1 4369 4651 -2682 2378 82 16 3 chrX 54585096 54585401 -122388739 + AluY SINE Alu 1 309 -2 12650 216 26 25 chrX 54585401 54587819 -122386321 + L1MA9 LINE L1 4651 7067 -266 207 0 0 0 chrX 54587819 54587842 -122386298 + (CA)n Simple_repeat Simple_repeat 2 24 0 12650 216 26 25 chrX 54587842 54587962 -122386178 + L1MA9 LINE L1 7067 7185 -148 2365 111 19 8 chrX 54587962 54588322 -122385818 - THE1B LTR MaLR 0 364 1 10960 99 13 30 chrX 54588322 54589929 -122384211 - THE1B-int LTR MaLR 0 1580 1 2714 78 17 6 chrX 54589929 54590289 -122383851 - THE1B LTR MaLR 0 364 1 12650 216 26 25 chrX 54590289 54590663 -122383477 + L1MA9 LINE L1 7184 7295 -38 7495 34 0 4 chrX 54590692 54592164 -122381976 + L1PA5 LINE L1 4684 6151 -3 26 0 0 0 chrX 54592164 54592190 -122381950 + AT_rich Low_complexity Low_complexity 1 26 0 602 262 30 0 chrX 54592552 54592716 -122381424 + MER5B DNA MER1_type 5 173 -5 400 302 176 0 chrX 54593861 54594020 -122380120 - L2 LINE L2 -1917 1397 1211 5271 165 39 2 chrX 54594020 54594257 -122379883 + L1PA16 LINE L1 4153 4380 -1786 351 0 0 0 chrX 54594257 54594296 -122379844 + (CA)n Simple_repeat Simple_repeat 2 40 0 5271 165 39 2 chrX 54594296 54595993 -122378147 + L1PA16 LINE L1 4380 6144 -22 255 103 0 0 chrX 54595993 54596032 -122378108 + (CATA)n Simple_repeat Simple_repeat 2 40 0 614 283 25 6 chrX 54596032 54596191 -122377949 - L2 LINE L2 -2098 1216 1055 225 0 0 0 chrX 54596721 54596746 -122377394 + (TA)n Simple_repeat Simple_repeat 2 26 0 194 214 24 0 chrX 54596981 54597023 -122377117 + MIR SINE MIR 112 154 -108 318 213 64 156 chrX 54597044 54597107 -122377033 + L2 LINE L2 3181 3225 -88 2196 69 17 3 chrX 54597107 54597395 -122376745 - AluSp SINE Alu -21 292 1 318 213 64 156 chrX 54597395 54597472 -122376668 + L2 LINE L2 3225 3308 -5 7547 25 7 0 chrX 54597539 54598896 -122375244 - L1PA4 LINE L1 0 6155 4804 6165 25 4 0 chrX 54598896 54599657 -122374483 + L1PA4 LINE L1 4016 4779 -1367 1378 286 146 25 chrX 54600144 54600829 -122373311 + L2 LINE L2 932 1699 -1615 307 275 28 46 chrX 54600838 54600947 -122373193 + L2 LINE L2 1861 1967 -1347 584 280 195 36 chrX 54601050 54601439 -122372701 + L2 LINE L2 2495 2945 -369 912 306 100 34 chrX 54601485 54601774 -122372366 + L2 LINE L2 2815 3148 -165 2052 114 0 24 chrX 54601774 54602115 -122372025 - L1MA4 LINE L1 -1 6299 5967 912 306 100 34 chrX 54602115 54602293 -122371847 + L2 LINE L2 3148 3313 0 253 213 206 43 chrX 54602360 54602454 -122371686 - MIR SINE MIR -91 117 7 2305 101 0 0 chrX 54602622 54602919 -122371221 + AluSx SINE Alu 1 297 -15 20516 192 23 24 chrX 54603297 54606774 -122367366 + L1PA12 LINE L1 1 4554 -3030 737 54 0 0 chrX 54606774 54606866 -122367274 + L1PA5 LINE L1 6047 6138 -16 20516 192 23 24 chrX 54606866 54609058 -122365082 + L1PA12 LINE L1 4554 6747 -837 1281 62 0 0 chrX 54609083 54609243 -122364897 + L1PA11 LINE L1 6015 6174 0 493 233 39 0 chrX 54609333 54609436 -122364704 - L2 LINE L2 -12 3301 3195 271 284 78 39 chrX 54609623 54609725 -122364415 + MIR SINE MIR 17 122 -140 204 40 0 0 chrX 54609725 54609750 -122364390 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 299 309 95 48 chrX 54610143 54610311 -122363829 - MIR SINE MIR -56 206 31 276 30 0 0 chrX 54610374 54610407 -122363733 + (TCC)n Simple_repeat Simple_repeat 1 33 0 599 284 71 18 chrX 54610472 54610697 -122363443 - MIR SINE MIR -6 256 20 207 298 18 0 chrX 54611072 54611129 -122363011 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 590 246 132 41 chrX 54611474 54611694 -122362446 + MIR SINE MIR 10 249 -13 447 221 42 0 chrX 54612112 54612207 -122361933 - MIR SINE MIR -3 259 161 273 229 0 16 chrX 54612259 54612320 -122361820 - L2 LINE L2 -62 3251 3192 191 281 62 0 chrX 54612337 54612401 -122361739 - MIR SINE MIR -148 114 47 4601 176 28 8 chrX 54612406 54613755 -122360385 + L1MB4 LINE L1 4806 6180 0 627 304 134 5 chrX 54614702 54614926 -122359214 - MIR SINE MIR 0 262 10 256 299 47 56 chrX 54615412 54615519 -122358621 + L3 LINE CR1 1467 1572 -5 215 310 35 0 chrX 54615889 54615947 -122358193 - L2 LINE L2 -25 3247 3188 2200 155 55 38 chrX 54616026 54616445 -122357695 - MSTB LTR MaLR 0 426 1 210 250 80 91 chrX 54616513 54616601 -122357539 - L2 LINE L2 -194 3078 2992 628 306 21 87 chrX 54616616 54616705 -122357435 - L2 LINE L2 -735 2579 2486 1891 68 4 4 chrX 54616705 54616942 -122357198 + AluSg SINE Alu 64 300 -10 628 306 21 87 chrX 54616942 54617336 -122356804 - L2 LINE L2 -828 2486 2128 1428 117 45 79 chrX 54617345 54617610 -122356530 - Tigger3(Golem) DNA MER2_type 0 3036 2781 758 184 0 34 chrX 54617607 54617754 -122356386 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 236 323 45 23 chrX 54617757 54617890 -122356250 - L2 LINE L2 -1193 2121 1986 1877 164 0 19 chrX 54617890 54618200 -122355940 + AluSx SINE Alu 1 304 -8 4716 165 16 5 chrX 54618202 54619157 -122354983 + L1MB7 LINE L1 5202 6165 -19 25 31 0 0 chrX 54619268 54619300 -122354840 + AT_rich Low_complexity Low_complexity 1 32 0 763 368 77 32 chrX 54619310 54620236 -122353904 - L2 LINE L2 -1354 1960 994 2415 92 0 3 chrX 54621106 54621410 -122352730 - AluSx SINE Alu -9 303 1 536 270 0 85 chrX 54621435 54621635 -122352505 - MIR3 SINE MIR -9 199 17 206 263 53 95 chrX 54621891 54621986 -122352154 - MIR SINE MIR -56 206 116 260 236 0 0 chrX 54623589 54623644 -122350496 - L3 LINE CR1 0 1577 1523 200 332 72 67 chrX 54623726 54623949 -122350191 - L2 LINE L2 -786 2528 2305 377 257 27 55 chrX 54624895 54625078 -122349062 - MER5B DNA MER1_type 0 178 1 330 305 0 0 chrX 54625169 54625264 -122348876 + GA-rich Low_complexity Low_complexity 2 96 0 300 331 0 50 chrX 54625381 54625502 -122348638 - MER5A DNA MER1_type -7 182 68 3689 178 45 55 chrX 54625632 54627079 -122347061 - L1MB7 LINE L1 -5 6179 4744 877 332 65 39 chrX 54627079 54627462 -122346678 + L2 LINE L2 2878 3270 -2 279 0 0 0 chrX 54627687 54627718 -122346422 + (GA)n Simple_repeat Simple_repeat 1 31 0 324 350 58 14 chrX 54627928 54628374 -122345766 + L1MEd LINE L1 573 1038 -5081 349 269 0 0 chrX 54628401 54628509 -122345631 - L1P LINE L1 -1097 5049 4942 219 318 48 0 chrX 54628684 54628747 -122345393 + MIR SINE MIR 76 141 -67 201 74 0 0 chrX 54628826 54628853 -122345287 + (A)n Simple_repeat Simple_repeat 1 27 0 1233 218 12 8 chrX 54628950 54629202 -122344938 + MLT1A1 LTR MaLR 1 253 -112 3095 233 53 47 chrX 54629203 54630449 -122343691 + L1ME3A LINE L1 4517 5943 -391 1630 186 0 55 chrX 54630449 54630776 -122343364 + AluJo SINE Alu 1 309 -3 3095 233 53 47 chrX 54630776 54631171 -122342969 + L1ME3A LINE L1 5943 6334 0 383 248 159 32 chrX 54633860 54634017 -122340123 + MIR3 SINE MIR 9 185 -23 200 209 23 0 chrX 54636383 54636426 -122337714 + G-rich Low_complexity Low_complexity 4 47 0 337 226 101 121 chrX 54636432 54636680 -122337460 + L1M2 LINE L1 873 1115 -5734 223 250 0 0 chrX 54637788 54637844 -122336296 + A-rich Low_complexity Low_complexity 4 59 0 429 262 103 16 chrX 54638160 54638286 -122335854 + MIR3 SINE MIR 20 156 -52 672 234 86 97 chrX 54638698 54638988 -122335152 + Charlie8 DNA MER1_type 1 287 -2130 349 337 98 61 chrX 54639152 54639478 -122334662 + L2 LINE L2 2913 3250 -22 279 279 76 0 chrX 54639479 54639558 -122334582 + L2 LINE L2 3227 3311 -2 2190 119 0 0 chrX 54639881 54640253 -122333887 + AluSq SINE Alu 1 372 0 532 260 20 34 chrX 54640446 54640592 -122333548 + MIR SINE MIR 11 154 -108 812 224 84 79 chrX 54640627 54640724 -122333416 - LTR48B LTR ERV1 0 644 549 2563 159 40 17 chrX 54640724 54641146 -122332994 - MSTB1 LTR MaLR 0 432 1 812 224 84 79 chrX 54641146 54641579 -122332561 - LTR48B LTR ERV1 -95 549 3 2453 268 55 15 chrX 54641802 54642809 -122331331 + L2 LINE L2 2262 3313 0 2276 76 14 0 chrX 54643054 54643345 -122330795 - AluSx SINE Alu -14 298 4 551 230 13 33 chrX 54643692 54643850 -122330290 - MIR SINE MIR -67 141 1 358 203 34 110 chrX 54645212 54645330 -122328810 - MIR SINE MIR -78 184 76 421 271 0 0 chrX 54645656 54645741 -122328399 - L2 LINE L2 -4 3268 3184 226 87 43 0 chrX 54646218 54646264 -122327876 + (TA)n Simple_repeat Simple_repeat 2 49 0 535 273 62 62 chrX 54646361 54646621 -122327519 - MIR SINE MIR -1 261 2 356 243 107 21 chrX 54647655 54647795 -122326345 - MIR3 SINE MIR -20 188 37 279 54 0 0 chrX 54649463 54649500 -122324640 + (CA)n Simple_repeat Simple_repeat 1 37 0 207 0 0 0 chrX 54649503 54649526 -122324614 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 541 312 64 45 chrX 54649632 54650103 -122324037 + L1ME4a LINE L1 5425 5904 -217 401 251 78 28 chrX 54650761 54650940 -122323200 - L1ME4a LINE L1 -214 5907 5720 480 243 110 7 chrX 54651316 54651452 -122322688 + MIR3 SINE MIR 45 194 -14 213 332 107 19 chrX 54652319 54652524 -122321616 + L2 LINE L2 2125 2347 -967 983 277 59 53 chrX 54652554 54653008 -122321132 + L2 LINE L2 2532 2987 -285 722 168 0 0 chrX 54653043 54653156 -122320984 - MLT1A1 LTR MaLR 0 365 253 2563 152 8 20 chrX 54653167 54653568 -122320572 + MSTD LTR MaLR 1 396 0 2921 195 49 13 chrX 54653569 54654763 -122319377 - L1MD1 LINE L1 -404 5838 4614 3794 189 46 32 chrX 54654791 54655303 -122318837 - L1ME1 LINE L1 -5 6230 5727 1115 192 57 119 chrX 54655303 54655642 -122318498 + MLT1A1 LTR MaLR 1 315 -50 2379 81 0 3 chrX 54655642 54655937 -122318203 + AluSq SINE Alu 1 294 -19 1115 192 57 119 chrX 54655937 54655983 -122318157 + MLT1A1 LTR MaLR 315 362 -3 3794 189 46 32 chrX 54655983 54656921 -122317219 - L1ME1 LINE L1 -508 5727 4765 * 5532 157 37 28 chrX 54656918 54657386 -122316754 - L1MA7 LINE L1 0 6291 5829 1466 176 65 14 chrX 54657386 54657676 -122316464 - AluJo SINE Alu -7 305 1 5532 157 37 28 chrX 54657676 54658662 -122315478 - L1MA7 LINE L1 -462 5829 4813 2314 114 0 0 chrX 54658662 54658969 -122315171 - AluSg SINE Alu -3 307 1 5532 157 37 28 chrX 54658969 54659240 -122314900 - L1MA7 LINE L1 -1478 4813 4546 7096 230 53 26 chrX 54659241 54661258 -122312882 - L1ME1 LINE L1 -1428 4787 2718 1620 142 98 10 chrX 54661302 54661597 -122312543 - MLT1A1 LTR MaLR -44 321 1 226 220 20 0 chrX 54661561 54661611 -122312529 - CER Satellite Satellite -45 51 1 * 1992 227 36 11 chrX 54661611 54661653 -122312487 - L1ME1 LINE L1 -3536 2679 2640 2420 64 0 3 chrX 54661653 54661948 -122312192 - AluSc SINE Alu -15 294 1 1992 227 36 11 chrX 54661948 54662555 -122311585 - L1ME1 LINE L1 -3575 2640 2062 657 284 104 8 chrX 54662563 54662831 -122311309 + L1M4 LINE L1 3325 3618 -2528 329 107 0 18 chrX 54662831 54662887 -122311253 + (GAA)n Simple_repeat Simple_repeat 1 55 0 733 163 0 8 chrX 54662891 54663014 -122311126 + L1M4 LINE L1 3606 3727 -2419 3257 237 84 17 chrX 54663017 54663349 -122310791 - L2 LINE L2 -2108 1206 898 2500 85 0 0 chrX 54663349 54663656 -122310484 - AluSx SINE Alu -5 307 1 3257 237 84 17 chrX 54663656 54664310 -122309830 - L2 LINE L2 -2416 898 103 966 202 50 85 chrX 54664321 54664371 -122309769 - MLT2C1 LTR ERVL -22 442 392 189 0 0 0 chrX 54664371 54664392 -122309748 + (GA)n Simple_repeat Simple_repeat 2 22 0 966 202 50 85 chrX 54664392 54664829 -122309311 - MLT2C1 LTR ERVL -72 392 1 7493 227 57 47 chrX 54664837 54666480 -122307660 - L1MEc LINE L1 -4072 2324 653 2401 41 34 0 chrX 54666480 54666771 -122307369 - AluY SINE Alu -10 301 1 7493 227 57 47 chrX 54666771 54667404 -122306736 - L1MEc LINE L1 -5743 653 27 2974 178 20 32 chrX 54667410 54667835 -122306305 - L1MB8 LINE L1 0 6178 5760 195 42 0 0 chrX 54667835 54667859 -122306281 + (TG)n Simple_repeat Simple_repeat 2 25 0 2974 178 20 32 chrX 54667859 54668029 -122306111 - L1MB8 LINE L1 -418 5760 5590 325 271 124 23 chrX 54668044 54668173 -122305967 - MIR SINE MIR -74 188 47 571 271 124 52 chrX 54668180 54668632 -122305508 + L1ME4a LINE L1 5510 5926 -195 366 245 179 0 chrX 54669593 54669699 -122304441 + L2 LINE L2 3188 3312 -1 671 288 90 30 chrX 54669930 54670197 -122303943 + L2 LINE L2 3022 3304 -9 2288 89 13 10 chrX 54670472 54670776 -122303364 + AluSc SINE Alu 1 305 -4 445 269 81 13 chrX 54670846 54670995 -122303145 + MER5A DNA MER1_type 3 161 -28 802 142 16 16 chrX 54670995 54671122 -122303018 - LTR40b LTR ERVL 0 462 336 30 27 0 0 chrX 54671122 54671159 -122302981 + AT_rich Low_complexity Low_complexity 1 37 0 1437 136 140 16 chrX 54671159 54671416 -122302724 - AluJo SINE Alu -22 290 2 470 217 78 16 chrX 54671430 54671559 -122302581 - LTR40b LTR ERVL -120 342 206 898 153 0 7 chrX 54671562 54671706 -122302434 + FLAM_C SINE Alu 1 143 0 1386 183 51 8 chrX 54671706 54671735 -122302405 - LTR40a LTR ERVL -251 268 242 1819 68 0 21 chrX 54671735 54671970 -122302170 - L1PA7 LINE L1 0 6154 5925 1386 183 51 8 chrX 54671970 54672197 -122301943 - LTR40a LTR ERVL -277 242 1 305 261 14 0 chrX 54672519 54672588 -122301552 - L2 LINE L2 0 3272 3203 25 0 0 0 chrX 54672756 54672781 -122301359 + AT_rich Low_complexity Low_complexity 1 25 0 2289 76 13 7 chrX 54672932 54673233 -122300907 + AluY SINE Alu 1 303 -8 578 255 9 0 chrX 54673254 54673443 -122300697 + L1M4c LINE L1 2228 2461 -3963 619 238 157 12 chrX 54675829 54676001 -122298139 + MIR SINE MIR 51 247 -15 1182 292 87 88 chrX 54676557 54676723 -122297417 + L2 LINE L2 2166 2331 -941 2324 103 3 0 chrX 54676723 54677023 -122297117 - AluSx SINE Alu -11 301 1 1182 292 87 88 chrX 54677023 54677945 -122296195 + L2 LINE L2 2331 3272 0 376 267 33 60 chrX 54678306 54678499 -122295641 - MIR SINE MIR -52 210 25 1813 224 95 9 chrX 54679128 54679592 -122294548 + MLT1D LTR MaLR 2 505 0 879 235 39 26 chrX 54680192 54680451 -122293689 - MIR SINE MIR 0 262 1 589 285 73 0 chrX 54680448 54680613 -122293527 - MER5B DNA MER1_type 0 178 2 * 622 207 42 27 chrX 54680813 54680991 -122293149 - MIR SINE MIR -56 206 20 538 289 158 14 chrX 54681244 54681604 -122292536 - L1ME4a LINE L1 -59 6062 5651 183 258 258 7 chrX 54681641 54681792 -122292348 - L2 LINE L2 0 3313 3125 185 398 48 0 chrX 54682455 54682558 -122291582 - L2 LINE L2 -16 3256 3149 3045 183 28 20 chrX 54683230 54683838 -122290302 - L1MB8 LINE L1 -5 6173 5561 438 320 167 53 chrX 54683876 54684188 -122289952 + L2 LINE L2 2205 2595 -719 2282 89 3 0 chrX 54684188 54684490 -122289650 + AluSp SINE Alu 1 303 -10 438 320 167 53 chrX 54684490 54684668 -122289472 + L2 LINE L2 2595 2751 -563 523 368 29 44 chrX 54684737 54685079 -122289061 + L2 LINE L2 2901 3237 -35 428 273 117 7 chrX 54685140 54685294 -122288846 - MIR SINE MIR -27 235 65 478 259 56 0 chrX 54686923 54687031 -122287109 + MIR3 SINE MIR 72 185 -23 445 219 130 16 chrX 54688866 54688989 -122285151 + L2 LINE L2 3177 3313 0 2553 218 47 35 chrX 54689075 54689558 -122284582 - MLT1E2 LTR MaLR 0 626 133 2070 153 46 0 chrX 54689558 54689930 -122284210 - L1MB3 LINE L1 -2 6181 5793 2553 218 47 35 chrX 54689930 54690065 -122284075 - MLT1E2 LTR MaLR -493 133 1 672 269 108 9 chrX 54690207 54690430 -122283710 - MIR SINE MIR -7 255 11 1604 212 15 61 chrX 54690573 54690965 -122283175 + MLT1A2 LTR MaLR 1 374 0 1866 194 12 18 chrX 54691594 54691980 -122282160 - MLT1E3 LTR MaLR 0 624 208 248 231 0 0 chrX 54691988 54692040 -122282100 + CT-rich Low_complexity Low_complexity 2 53 0 4118 187 53 16 chrX 54692042 54693379 -122280761 - L1MD2 LINE L1 -16 6226 4894 981 219 61 8 chrX 54693383 54693629 -122280511 - MLT1E1 LTR MaLR -395 259 1 2043 96 17 7 chrX 54693659 54693951 -122280189 - AluSq SINE Alu -16 297 3 541 311 88 47 chrX 54694952 54695418 -122278722 + L2 LINE L2 258 742 -2572 345 295 27 35 chrX 54695420 54695533 -122278607 + MER5B DNA MER1_type 31 153 -36 4398 179 60 21 chrX 54695824 54697300 -122276840 - MER52A LTR ERV1 0 1755 7 279 0 0 0 chrX 54697644 54697675 -122276465 + (CA)n Simple_repeat Simple_repeat 2 32 0 591 318 154 30 chrX 54697678 54698288 -122275852 + L2 LINE L2 1684 2369 -945 189 269 90 15 chrX 54698413 54698480 -122275660 + L2 LINE L2 2624 2695 -619 319 238 0 0 chrX 54698484 54698547 -122275593 + L2 LINE L2 3210 3272 0 202 246 169 15 chrX 54698930 54698995 -122275145 - L2 LINE L2 0 3272 3198 237 351 44 9 chrX 54699130 54699244 -122274896 + MIR3 SINE MIR 55 172 -36 342 266 80 9 chrX 54700617 54700730 -122273410 + MIR3 SINE MIR 42 162 -46 188 155 99 70 chrX 54701119 54701190 -122272950 + L2 LINE L2 3184 3256 -57 257 240 10 70 chrX 54701985 54702085 -122272055 - L1MC4a LINE L1 -1837 5971 5878 394 222 144 33 chrX 54702621 54702774 -122271366 - Charlie8 DNA MER1_type -2146 271 102 972 197 129 17 chrX 54702783 54703016 -122271124 - MIR SINE MIR 0 262 4 235 309 55 67 chrX 54703382 54703547 -122270593 + MIR SINE MIR 24 186 -76 185 314 178 16 chrX 54704496 54704681 -122269459 - L2 LINE L2 -495 2819 2605 1483 262 66 17 chrX 54705737 54706446 -122267694 - L2 LINE L2 -46 3267 2528 266 268 14 14 chrX 54706831 54706902 -122267238 - MIR3 SINE MIR -40 168 98 663 207 71 18 chrX 54707700 54707869 -122266271 + MER5B DNA MER1_type 1 178 0 327 271 71 0 chrX 54708305 54708390 -122265750 + L2 LINE L2 3223 3313 0 336 319 33 68 chrX 54708494 54708804 -122265336 - L2 LINE L2 -223 3049 2734 332 319 75 9 chrX 54708924 54709137 -122265003 - L2 LINE L2 -630 2684 2458 374 265 216 31 chrX 54709147 54709309 -122264831 - MIR SINE MIR -1 261 70 4828 170 196 12 chrX 54709332 54710406 -122263734 + MER52C LTR ERV1 7 1278 0 207 318 16 0 chrX 54710415 54710478 -122263662 - MIR SINE MIR -197 65 2 668 271 67 64 chrX 54710739 54711067 -122263073 + MER102b DNA MER1_type 12 340 -1 1547 256 30 8 chrX 54713812 54714210 -122259930 - MLT1I LTR MaLR 0 409 3 1060 251 55 0 chrX 54715336 54715571 -122258569 + MIR SINE MIR 2 249 -13 206 171 24 0 chrX 54715575 54715616 -122258524 + (CAT)n Simple_repeat Simple_repeat 2 43 0 634 282 66 5 chrX 54716992 54717205 -122256935 + L2 LINE L2 2523 2748 -566 429 296 109 52 chrX 54717206 54717436 -122256704 + L1MC4 LINE L1 7790 8032 -10 207 0 0 0 chrX 54717448 54717471 -122256669 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 604 220 132 166 chrX 54717494 54718100 -122256040 + L2 LINE L2 2735 3313 0 274 184 0 0 chrX 54718291 54718340 -122255800 + MIR SINE MIR 200 248 -14 357 286 101 0 chrX 54718619 54718738 -122255402 + L1MDa LINE L1 2448 2578 -3962 540 258 104 64 chrX 54718753 54719336 -122254804 + L1MDa LINE L1 2625 3238 -3302 1754 156 104 3 chrX 54719336 54719664 -122254476 - MLT1A1 LTR MaLR 0 365 5 540 258 104 64 chrX 54719664 54719732 -122254408 + L1MDa LINE L1 3238 3302 -3238 338 327 9 0 chrX 54719737 54719844 -122254296 + L1MDa LINE L1 3374 3481 -3059 1902 81 28 35 chrX 54719853 54720137 -122254003 + L1PA10 LINE L1 5881 6162 -6 967 201 11 11 chrX 54721685 54721874 -122252266 - MER5A DNA MER1_type 0 189 1 615 242 75 21 chrX 54723067 54723253 -122250887 - MIR SINE MIR 0 262 67 866 234 91 0 chrX 54723265 54723572 -122250568 + L1MDa LINE L1 3477 3811 -2729 1309 248 44 54 chrX 54723572 54723730 -122250410 + MSTD LTR MaLR 1 159 -237 2176 108 0 0 chrX 54723730 54724025 -122250115 + AluSx SINE Alu 1 295 -17 1309 248 44 54 chrX 54724025 54724253 -122249887 + MSTD LTR MaLR 159 383 -13 4573 190 26 65 chrX 54724261 54725334 -122248806 + MSTD-int LTR MaLR 1 1031 -704 1069 180 11 11 chrX 54725352 54725535 -122248605 + MSTD LTR MaLR 214 396 0 3042 219 31 19 chrX 54725538 54726309 -122247831 + L1MDa LINE L1 3810 4589 -1951 322 262 197 16 chrX 54726345 54726467 -122247673 + L2 LINE L2 3129 3272 0 430 257 115 100 chrX 54728410 54728845 -122245295 - MLT1J2 LTR MaLR -2 448 1 712 134 0 0 chrX 54729639 54729736 -122244404 + AluJ/FLAM SINE Alu 1 97 -215 265 291 87 10 chrX 54730757 54730860 -122243280 - MIR3 SINE MIR -38 170 60 * 405 298 163 28 chrX 54730833 54731048 -122243092 - L3 LINE CR1 -1 1576 1333 350 271 35 24 chrX 54732265 54732435 -122241705 + (CAGT)n Simple_repeat Simple_repeat 2 173 0 203 241 17 17 chrX 54732575 54732633 -122241507 - L2 LINE L2 -213 3059 3002 280 258 101 101 chrX 54732739 54732898 -122241242 + MIR3 SINE MIR 43 201 -7 243 266 106 11 chrX 54733428 54733522 -122240618 - MIR3 SINE MIR -12 196 94 365 304 99 34 chrX 54733599 54733928 -122240212 - L2 LINE L2 -219 3053 2700 1047 215 56 0 chrX 54733974 54734188 -122239952 + MIR SINE MIR 24 249 -13 394 279 29 2 chrX 54734212 54734337 -122239803 - MIR SINE MIR -62 146 18 235 273 78 47 chrX 54734323 54734451 -122239689 - L2 LINE L2 -601 2713 2582 * 475 279 29 64 chrX 54735713 54735917 -122238223 - MIR3 SINE MIR -1 207 11 206 179 26 0 chrX 54735932 54735971 -122238169 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 230 333 0 0 chrX 54736705 54736768 -122237372 + GA-rich Low_complexity Low_complexity 4 66 0 585 233 67 56 chrX 54736849 54737029 -122237111 - MIR3 SINE MIR -6 202 21 677 249 85 0 chrX 54737780 54737945 -122236195 - MIR SINE MIR -6 256 78 767 328 187 14 chrX 54738045 54738563 -122235577 + L3 LINE CR1 969 1576 -1 312 295 0 29 chrX 54738602 54738707 -122235433 - L3b LINE CR1 -142 1441 1340 185 235 0 118 chrX 54739011 54739079 -122235061 - L3b LINE CR1 -169 1414 1355 940 210 119 75 chrX 54739716 54740154 -122233986 - LTR16A1 LTR ERVL 0 457 1 325 230 35 62 chrX 54740683 54740796 -122233344 - MIR SINE MIR -1 261 152 288 266 109 31 chrX 54740771 54740899 -122233241 - L2 LINE L2 -795 2519 2382 * 1206 305 51 2 chrX 54741421 54741873 -122232267 - MLT1L LTR MaLR 0 615 142 338 241 34 67 chrX 54741880 54742022 -122232118 - MIR SINE MIR -22 186 43 549 286 67 38 chrX 54742904 54743114 -122231026 + MIR SINE MIR 47 262 0 446 267 166 7 chrX 54743121 54743326 -122230814 + MIR SINE MIR 2 237 -25 233 269 19 0 chrX 54743419 54743471 -122230669 - L2 LINE L2 -86 3227 3175 223 321 24 0 chrX 54743494 54743578 -122230562 + MIR3 SINE MIR 109 194 -14 641 308 71 9 chrX 54743692 54743916 -122230224 + MIR SINE MIR 4 241 -21 26 30 0 0 chrX 54744182 54744215 -122229925 + AT_rich Low_complexity Low_complexity 1 33 0 182 191 0 95 chrX 54744937 54744979 -122229161 + MIR3 SINE MIR 120 157 -51 432 266 27 82 chrX 54745575 54745759 -122228381 + L3 LINE CR1 1400 1573 -4 452 248 39 16 chrX 54745768 54745897 -122228243 + MIR3 SINE MIR 76 207 -1 4555 219 70 18 chrX 54746212 54746413 -122227727 - L1 LINE L1 -1385 4761 4572 1348 164 29 157 chrX 54746413 54746828 -122227312 + MLT1A1 LTR MaLR 4 365 0 4555 219 70 18 chrX 54746828 54747602 -122226538 - L1 LINE L1 -1574 4572 3694 243 0 0 0 chrX 54747602 54747629 -122226511 + (TA)n Simple_repeat Simple_repeat 1 27 0 4555 219 70 18 chrX 54747629 54748002 -122226138 - L1 LINE L1 -2452 3694 3342 2646 198 114 34 chrX 54747999 54748968 -122225172 - L1M4c LINE L1 -4798 1848 823 * 398 282 19 19 chrX 54748982 54749138 -122225002 - L1M4c LINE L1 -6385 157 2 589 270 206 5 chrX 54749398 54749602 -122224538 - MIR SINE MIR 0 262 18 516 287 6 0 chrX 54749720 54749901 -122224239 - L1M4 LINE L1 -5194 1348 1167 283 264 0 0 chrX 54750644 54750716 -122223424 + (TGG)n Simple_repeat Simple_repeat 1 72 0 343 291 109 9 chrX 54751655 54751765 -122222375 - MIR3 SINE MIR -2 206 86 24 0 0 0 chrX 54751960 54751984 -122222156 + AT_rich Low_complexity Low_complexity 1 24 0 910 161 16 157 chrX 54752232 54752487 -122221653 - MER20 DNA MER1_type 0 219 1 592 207 179 0 chrX 54752506 54752646 -122221494 + MER5A DNA MER1_type 4 168 -21 225 268 98 59 chrX 54752715 54752868 -122221272 + MER5A DNA MER1_type 4 162 -27 982 283 218 7 chrX 54753094 54753912 -122220228 + L2 LINE L2 2310 3312 -1 433 316 53 28 chrX 54754079 54754326 -122219814 + L1ME4a LINE L1 5411 5663 -458 764 210 113 4 chrX 54754610 54754865 -122219275 + L1ME4a LINE L1 5657 5940 -181 4026 126 10 82 chrX 54754866 54755476 -122218664 + L1MB4 LINE L1 5450 5992 -188 2316 103 10 0 chrX 54755476 54755777 -122218363 - AluSx SINE Alu -8 304 1 4026 126 10 82 chrX 54755777 54755954 -122218186 + L1MB4 LINE L1 5992 6180 0 678 230 136 17 chrX 54756903 54757111 -122217029 + MIR SINE MIR 13 244 -18 188 243 0 14 chrX 54758223 54758293 -122215847 + GA-rich Low_complexity Low_complexity 5 73 0 430 324 18 29 chrX 54759491 54759661 -122214479 - L3 LINE CR1 -11 1566 1399 463 293 13 8 chrX 54759702 54759865 -122214275 - MIR SINE MIR -62 146 38 430 303 209 18 chrX 54759871 54760148 -122213992 - L3 LINE CR1 -261 1316 987 552 280 7 28 chrX 54761274 54761417 -122212723 + MIR SINE MIR 20 159 -103 424 255 85 0 chrX 54761559 54761665 -122212475 - MIR SINE MIR -62 146 40 22 56 0 0 chrX 54764073 54764109 -122210031 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chrX 54764192 54764215 -122209925 + GC_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chrX 54764331 54764352 -122209788 + (CAG)n Simple_repeat Simple_repeat 1 21 0 29 101 0 0 chrX 54764627 54764726 -122209414 + GC_rich Low_complexity Low_complexity 1 99 0 233 227 14 41 chrX 54764744 54764961 -122209179 + (CCGCT)n Simple_repeat Simple_repeat 1 212 0 732 248 154 0 chrX 54766368 54766582 -122207558 - MIR SINE MIR -3 259 13 259 334 45 32 chrX 54766664 54766811 -122207329 + MIR3 SINE MIR 9 162 -46 291 332 51 42 chrX 54766863 54767080 -122207060 - L2 LINE L2 -225 3047 2829 441 271 60 38 chrX 54767117 54767250 -122206890 - L2 LINE L2 -36 3236 3101 283 368 0 0 chrX 54767354 54767441 -122206699 - L2 LINE L2 0 3313 3227 884 308 65 55 chrX 54767452 54767940 -122206200 - L2 LINE L2 -233 3039 2554 897 241 44 102 chrX 54769443 54769983 -122204157 - MLT1J LTR MaLR 0 511 3 1181 308 35 19 chrX 54770090 54770463 -122203677 + L3 LINE CR1 859 1237 -340 969 262 32 24 chrX 54770598 54770846 -122203294 - MIR SINE MIR 0 262 13 368 273 99 41 chrX 54771233 54771405 -122202735 + L2 LINE L2 620 801 -2513 415 281 43 55 chrX 54771427 54771591 -122202549 + L2 LINE L2 1227 1388 -1926 345 24 0 0 chrX 54771592 54771634 -122202506 - MSTB2 LTR MaLR 0 457 416 500 139 0 0 chrX 54771635 54771707 -122202433 - AluJ/FLAM SINE Alu -239 73 2 721 269 37 120 chrX 54771707 54772139 -122202001 + L2 LINE L2 2877 3272 0 288 221 207 57 chrX 54772285 54772425 -122201715 + L3 LINE CR1 1416 1576 -1 326 276 148 42 chrX 54774535 54774752 -122199388 + MIR SINE MIR 20 259 -3 520 246 86 32 chrX 54777440 54777627 -122196513 - MIR SINE MIR -55 207 11 253 254 0 28 chrX 54777727 54777798 -122196342 + CT-rich Low_complexity Low_complexity 1 69 0 1037 244 38 17 chrX 54777826 54778170 -122195970 - L1ME2 LINE L1 -8 6156 5806 * 2426 139 85 33 chrX 54778160 54778676 -122195464 - L1MB8 LINE L1 0 6178 5636 1314 152 60 45 chrX 54978678 54978947 -121995193 + AluJo SINE Alu 38 310 -2 2384 70 6 13 chrX 54978948 54979260 -121994880 + AluY SINE Alu 1 310 -1 1574 181 7 0 chrX 54979278 54979579 -121994561 + AluJo SINE Alu 1 303 0 779 269 84 16 chrX 54979709 54979958 -121994182 - L2 LINE L2 -560 2754 2489 2388 80 0 3 chrX 54984186 54984497 -121989643 + AluSx SINE Alu 1 310 -2 285 275 36 72 chrX 54984707 54984845 -121989295 - L1MC4a LINE L1 -1877 5931 5799 2166 176 68 40 chrX 54985036 54985552 -121988588 - L1MB5 LINE L1 0 6174 5652 237 196 235 49 chrX 54985520 54985622 -121988518 - L1MB5 LINE L1 -2368 5440 5320 * 684 120 0 0 chrX 54985645 54985745 -121988395 - FLAM_C SINE Alu -1 142 43 1705 92 0 0 chrX 54985772 54986000 -121988140 + AluSq SINE Alu 1 228 -85 1852 259 87 11 chrX 54988394 54989003 -121985137 - MER67B LTR ERV1 -3 658 4 243 242 253 5 chrX 54989032 54989218 -121984922 + L2 LINE L2 2036 2267 -1047 1837 106 3 45 chrX 54989920 54990312 -121983828 - Charlie3 DNA MER1_type 0 2712 1 797 136 0 36 chrX 54990536 54990676 -121983464 - FLAM_C SINE Alu 0 143 9 278 160 0 0 chrX 54990817 54990867 -121983273 + MIR SINE MIR 100 149 -113 633 226 7 20 chrX 54991046 54991192 -121982948 + L1MB7 LINE L1 5960 6103 -81 707 184 0 16 chrX 54991606 54991715 -121982425 + FLAM_C SINE Alu 5 113 -199 270 0 0 0 chrX 54991715 54991745 -121982395 + (TA)n Simple_repeat Simple_repeat 2 31 0 707 184 0 16 chrX 54991745 54991760 -121982380 + FLAM_C SINE Alu 113 127 -185 2161 77 0 77 chrX 54991880 54992205 -121981935 - AluSx SINE Alu -12 300 1 648 226 0 8 chrX 54992205 54992338 -121981802 - AluJo/FLAM SINE Alu -179 133 2 203 125 0 50 chrX 54993480 54993520 -121980620 + (CCCCCT)n Simple_repeat Simple_repeat 2 39 0 557 302 21 16 chrX 54996388 54996580 -121977560 - MIR3 SINE MIR -13 195 3 727 319 107 37 chrX 54997215 54997916 -121976224 + L2 LINE L2 2508 3265 -7 704 298 7 75 chrX 54998040 54998319 -121975821 - MIR SINE MIR 0 262 3 944 302 4 8 chrX 54998413 54998671 -121975469 + MIR SINE MIR 4 260 -2 245 339 96 26 chrX 54998940 54999055 -121975085 + MIR SINE MIR 21 143 -65 396 217 16 70 chrX 54999445 54999574 -121974566 + L1ME LINE L1 5513 5634 -487 893 154 0 0 chrX 54999697 54999827 -121974313 - FLAM_A SINE Alu -3 130 1 495 107 0 0 chrX 54999854 54999929 -121974211 + (CA)n Simple_repeat Simple_repeat 2 76 0 576 272 6 0 chrX 55000062 55000220 -121973920 + MIR SINE MIR 103 261 -1 390 326 22 7 chrX 55000247 55000385 -121973755 + L2 LINE L2 3133 3272 0 231 213 21 0 chrX 55000441 55000488 -121973652 - MIR SINE MIR -139 69 22 444 276 41 27 chrX 55001535 55001745 -121972395 - MIR SINE MIR -46 216 3 274 322 0 0 chrX 55001909 55001996 -121972144 - MIR SINE MIR -89 119 33 612 167 28 0 chrX 55003057 55003165 -121970975 + MIR SINE MIR 98 208 -54 844 304 4 20 chrX 55003203 55003456 -121970684 - MIR SINE MIR -8 254 6 508 311 43 6 chrX 55004988 55005152 -121968988 + MIR SINE MIR 2 171 -91 2215 109 0 0 chrX 55005186 55005488 -121968652 - AluSx SINE Alu -10 302 1 543 274 127 25 chrX 55006000 55006237 -121967903 - MIR SINE MIR 0 262 2 405 293 80 106 chrX 55006547 55007194 -121966946 - L2 LINE L2 -1 3271 2619 1554 147 91 50 chrX 55007286 55007605 -121966535 - MLT1A1 LTR MaLR -30 335 4 663 259 59 62 chrX 55007612 55007865 -121966275 - L2 LINE L2 -27 3286 3033 2202 152 30 25 chrX 55007865 55008227 -121965913 - THE1B LTR MaLR 0 364 1 663 259 59 62 chrX 55008227 55008278 -121965862 - L2 LINE L2 -280 3033 2983 217 260 150 30 chrX 55008311 55008411 -121965729 + MIR SINE MIR 27 138 -70 387 286 8 17 chrX 55008770 55008889 -121965251 - MIR SINE MIR -57 151 34 711 279 53 5 chrX 55009025 55009233 -121964907 - MIR SINE MIR -40 222 5 910 196 27 16 chrX 55009542 55009726 -121964414 + MER5A DNA MER1_type 1 186 -3 369 305 26 7 chrX 55010959 55011113 -121963027 - MIR3 SINE MIR -48 160 4 768 176 0 44 chrX 55011259 55011395 -121962745 + AluJo SINE Alu 7 136 -176 273 275 244 0 chrX 55011625 55011756 -121962384 - MIR SINE MIR 0 262 100 276 305 31 47 chrX 55011813 55011941 -121962199 - MIR SINE MIR -66 196 71 21 0 0 0 chrX 55012466 55012487 -121961653 + AT_rich Low_complexity Low_complexity 1 21 0 279 182 0 26 chrX 55013482 55013559 -121960581 + L1ME4a LINE L1 6043 6117 -4 264 329 25 56 chrX 55014025 55014186 -121959954 + MIR SINE MIR 49 204 -58 * 770 304 34 8 chrX 55014152 55014389 -121959751 - MIR SINE MIR -13 249 7 201 283 0 0 chrX 55014662 55014715 -121959425 + C-rich Low_complexity Low_complexity 1 53 0 288 0 0 0 chrX 55015646 55015678 -121958462 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 125 0 0 chrX 55015678 55015710 -121958430 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 314 105 39 chrX 55016356 55016509 -121957631 + MIR3 SINE MIR 30 192 -16 214 366 24 0 chrX 55016565 55016688 -121957452 + MIR SINE MIR 65 190 -72 282 288 62 34 chrX 55017277 55017454 -121956686 + L2 LINE L2 1628 1809 -1505 1724 259 59 23 chrX 55018004 55018567 -121955573 - L2 LINE L2 -506 2808 2226 936 284 78 19 chrX 55018570 55018943 -121955197 + L2 LINE L2 2919 3313 0 697 283 25 10 chrX 55018942 55019140 -121955000 - MIR SINE MIR -49 213 13 * 481 252 57 43 chrX 55019166 55019376 -121954764 + MIR SINE MIR 41 253 -9 273 162 29 162 chrX 55019377 55019482 -121954658 + MIR3 SINE MIR 115 205 -3 1014 247 13 4 chrX 55020738 55020973 -121953167 - MIR SINE MIR 0 262 26 270 0 0 0 chrX 55021612 55021642 -121952498 + (TG)n Simple_repeat Simple_repeat 1 30 0 279 347 64 32 chrX 55021660 55021974 -121952166 - L2 LINE L2 -480 2834 2511 397 239 89 17 chrX 55022118 55022298 -121951842 - L1ME4a LINE L1 -3 6118 5926 338 297 144 0 chrX 55022353 55022471 -121951669 - L1ME4a LINE L1 -1988 5820 5686 348 270 0 20 chrX 55022533 55022633 -121951507 + MIR3 SINE MIR 64 161 -47 224 271 23 23 chrX 55022693 55022822 -121951318 + CT-rich Low_complexity Low_complexity 5 133 0 186 43 0 0 chrX 55023372 55023395 -121950745 + (CA)n Simple_repeat Simple_repeat 2 24 0 189 239 14 56 chrX 55023472 55023543 -121950597 - L3 LINE CR1 -1222 355 288 1217 265 46 48 chrX 55024485 55025246 -121948894 - L2 LINE L2 -3 3310 2553 403 188 154 17 chrX 55026070 55026187 -121947953 + L2 LINE L2 3137 3269 -3 721 194 47 24 chrX 55026738 55026908 -121947232 + MIR SINE MIR 49 222 -40 197 286 18 0 chrX 55027073 55027129 -121947011 - MIR SINE MIR -50 212 156 474 240 183 34 chrX 55028222 55028397 -121945743 - MIR SINE MIR -33 229 29 494 287 54 10 chrX 55029256 55029447 -121944693 - MIR SINE MIR -56 206 11 213 274 12 48 chrX 55030028 55030112 -121944028 + MIR SINE MIR 35 115 -147 691 293 54 0 chrX 55032464 55032669 -121941471 - MIR SINE MIR -1 261 46 21 0 0 0 chrX 55033110 55033131 -121941009 + AT_rich Low_complexity Low_complexity 1 21 0 451 221 207 7 chrX 55033515 55033660 -121940480 + MER5A DNA MER1_type 4 177 -12 547 135 11 0 chrX 55033672 55033761 -121940379 + MER5A DNA MER1_type 1 90 -99 252 287 165 17 chrX 55033997 55034112 -121940028 - MIR SINE MIR -12 250 119 741 218 140 5 chrX 55034220 55034413 -121939727 - MIR SINE MIR -20 242 24 393 250 25 25 chrX 55035134 55035254 -121938886 - MIR SINE MIR -62 200 81 800 335 83 37 chrX 55036657 55037717 -121936423 + L2 LINE L2 1462 2570 -744 204 40 0 0 chrX 55037724 55037749 -121936391 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2513 280 78 13 chrX 55037749 55039022 -121935118 - L2 LINE L2 -17 3296 1935 1117 222 0 17 chrX 55039039 55039273 -121934867 - MIR SINE MIR -20 242 13 586 305 39 107 chrX 55039305 55039925 -121934215 - L2 LINE L2 -1379 1935 1358 333 234 108 54 chrX 55039945 55040072 -121934068 + L2 LINE L2 2586 2726 -588 2444 71 3 0 chrX 55040072 55040381 -121933759 + AluY SINE Alu 1 310 -1 333 234 108 54 chrX 55040381 55040420 -121933720 + L2 LINE L2 2726 2761 -553 309 267 67 19 chrX 55040559 55040664 -121933476 + L2 LINE L2 3153 3262 -10 633 264 126 26 chrX 55040936 55041167 -121932973 - MIR SINE MIR 0 262 9 959 190 11 17 chrX 55041184 55041363 -121932777 - MER5B DNA MER1_type 0 178 1 273 336 28 0 chrX 55042694 55042801 -121931339 - MIR3 SINE MIR -84 124 15 505 337 11 11 chrX 55043120 55043310 -121930830 - MIR SINE MIR -61 201 12 212 268 0 28 chrX 55044418 55044489 -121929651 + CT-rich Low_complexity Low_complexity 2 70 0 277 294 0 0 chrX 55044514 55044582 -121929558 + C-rich Low_complexity Low_complexity 1 68 0 245 128 21 0 chrX 55044741 55044788 -121929352 + (CGGG)n Simple_repeat Simple_repeat 3 50 0 243 360 10 20 chrX 55044930 55045030 -121929110 - MIR3 SINE MIR -107 101 3 647 265 48 83 chrX 55045515 55045866 -121928274 - L2 LINE L2 0 3272 2934 2466 55 3 3 chrX 55045876 55046183 -121927957 + AluY SINE Alu 1 307 -4 720 285 26 10 chrX 55046750 55046943 -121927197 + MER91A DNA MER1_type 1 196 0 378 219 80 139 chrX 55047487 55047688 -121926452 - MIR SINE MIR -24 238 50 182 167 409 15 chrX 55047801 55047867 -121926273 - MIR SINE MIR -109 153 62 273 366 8 8 chrX 55048851 55048974 -121925166 + MIR SINE MIR 23 145 -63 491 204 9 9 chrX 55049273 55049381 -121924759 - L2 LINE L2 0 3313 3206 991 176 0 16 chrX 55049384 55049577 -121924563 - AluJb SINE Alu -1 311 122 1885 156 3 3 chrX 55049597 55049905 -121924235 - AluJb SINE Alu -4 308 1 831 186 0 0 chrX 55049915 55050055 -121924085 - FLAM_C SINE Alu -2 141 2 223 349 12 12 chrX 55050500 55050583 -121923557 + MIR SINE MIR 16 98 -110 290 350 6 49 chrX 55050876 55051039 -121923101 + MIR SINE MIR 59 214 -48 306 0 0 0 chrX 55051576 55051610 -121922530 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 324 0 0 0 chrX 55051609 55051645 -121922495 + (GA)n Simple_repeat Simple_repeat 1 36 0 202 191 32 63 chrX 55053153 55053216 -121920924 - MIR3 SINE MIR -40 168 108 1254 60 0 22 chrX 55053430 55053470 -121920670 + (TTTC)n Simple_repeat Simple_repeat 1 219 0 1254 60 0 22 chrX 55053470 55053654 -121920486 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 393 220 68 8 chrX 55053713 55053831 -121920309 - L1ME4a LINE L1 -11 6110 5986 2258 81 0 3 chrX 55053939 55054234 -121919906 + AluSg SINE Alu 5 298 -12 2565 105 8 11 chrX 55054240 55054611 -121919529 - L1MB1 LINE L1 -17 6151 5782 269 261 96 26 chrX 55054613 55054728 -121919412 + MIR3 SINE MIR 83 205 -3 397 80 8 240 chrX 55054750 55054875 -121919265 + MLT1A2 LTR MaLR 1 96 -278 677 90 9 0 chrX 55054875 55054986 -121919154 + (TA)n Simple_repeat Simple_repeat 2 113 0 2418 142 13 34 chrX 55054986 55055502 -121918638 - L1M3 LINE L1 -532 5780 5255 377 301 17 87 chrX 55055692 55055865 -121918275 + MIR SINE MIR 47 207 -55 231 257 95 29 chrX 55055930 55056035 -121918105 + MIR3 SINE MIR 94 205 -3 1478 151 101 40 chrX 55056057 55056421 -121917719 + MLT1A1 LTR MaLR 1 363 -2 334 286 11 0 chrX 55056830 55056921 -121917219 - MIR SINE MIR -118 144 53 227 362 29 9 chrX 55057055 55057160 -121916980 - MIR3 SINE MIR -9 199 93 199 241 0 35 chrX 55057302 55057360 -121916780 - MIR3 SINE MIR -3 205 150 427 313 62 7 chrX 55058206 55058350 -121915790 - MIR SINE MIR -17 245 94 230 258 34 67 chrX 55058936 55059025 -121915115 + L3b LINE CR1 1298 1383 -200 227 361 62 0 chrX 55059694 55059824 -121914316 - L3b LINE CR1 -131 1452 1315 283 152 0 0 chrX 55060402 55060448 -121913692 + L3 LINE CR1 1530 1575 -2 809 311 39 11 chrX 55061073 55061359 -121912781 + MER102b DNA MER1_type 6 299 -42 404 204 10 48 chrX 55061361 55061464 -121912676 - MIR SINE MIR -72 136 38 215 143 24 24 chrX 55061803 55061845 -121912295 + (CCGGG)n Simple_repeat Simple_repeat 1 42 0 204 353 0 0 chrX 55061950 55062018 -121912122 + C-rich Low_complexity Low_complexity 102 169 0 366 23 0 0 chrX 55062590 55062633 -121911507 + (CA)n Simple_repeat Simple_repeat 2 44 0 294 98 0 0 chrX 55062636 55062687 -121911453 + (CAG)n Simple_repeat Simple_repeat 3 53 0 659 202 0 0 chrX 55063465 55063579 -121910561 - MER81 DNA DNA 0 114 1 333 200 0 131 chrX 55063634 55063764 -121910376 - MIR SINE MIR -74 188 76 475 279 36 18 chrX 55064571 55064736 -121909404 + MIR3 SINE MIR 38 205 -3 738 156 67 94 chrX 55064755 55064935 -121909205 - FRAM SINE Alu -9 167 1 341 313 91 23 chrX 55065069 55065245 -121908895 - MIR SINE MIR -16 246 59 758 132 162 0 chrX 55065248 55065384 -121908756 - BC200 scRNA scRNA -41 159 2 193 218 0 36 chrX 55065392 55065447 -121908693 - MIR SINE MIR -209 53 1 232 358 32 0 chrX 55065489 55065584 -121908556 - MIR SINE MIR -56 206 109 398 310 54 0 chrX 55065815 55065944 -121908196 - MIR SINE MIR -14 248 113 180 111 0 0 chrX 55066125 55066152 -121907988 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 805 221 19 48 chrX 55066246 55066454 -121907686 - MIR SINE MIR -15 247 46 426 332 31 31 chrX 55066470 55066762 -121907378 - L2 LINE L2 -503 2811 2520 272 306 8 58 chrX 55066765 55066886 -121907254 + MER91A DNA MER1_type 82 196 0 533 298 52 21 chrX 55067617 55067808 -121906332 + MIR3 SINE MIR 11 207 -1 373 222 11 0 chrX 55068094 55068184 -121905956 + MIR SINE MIR 58 148 -114 1387 236 85 20 chrX 55068184 55068629 -121905511 - MLT1L LTR MaLR -15 600 127 484 236 49 16 chrX 55068653 55068776 -121905364 + MER5B DNA MER1_type 48 174 -4 256 272 120 56 chrX 55068776 55068901 -121905239 - MLT1L LTR MaLR -456 159 27 203 379 17 17 chrX 55069043 55069159 -121904981 + MER5B DNA MER1_type 1 116 -62 234 217 0 0 chrX 55070034 55070080 -121904060 - L2 LINE L2 -6 3307 3262 385 227 91 58 chrX 55070391 55070545 -121903595 + MIR3 SINE MIR 1 159 -49 898 268 112 29 chrX 55070550 55071062 -121903078 - L3 LINE CR1 -3 1574 967 243 291 64 0 chrX 55071078 55071188 -121902952 + L2 LINE L2 3187 3303 -10 214 219 284 49 chrX 55072088 55072204 -121901936 + MIR SINE MIR 8 147 -115 190 272 123 25 chrX 55072613 55072694 -121901446 - MIR SINE MIR -125 137 49 1493 202 19 7 chrX 55073290 55073597 -121900543 - AluJo SINE Alu -1 311 1 732 291 62 43 chrX 55073605 55074072 -121900068 + L2 LINE L2 2282 2757 -557 322 298 36 69 chrX 55074106 55074295 -121899845 + L2 LINE L2 2853 3032 -240 1747 165 9 22 chrX 55074295 55074611 -121899529 - AluJo SINE Alu 0 312 1 322 298 36 69 chrX 55074611 55074696 -121899444 + L2 LINE L2 3032 3118 -154 1304 162 48 0 chrX 55074857 55075067 -121899073 + MER58A DNA MER1_type 2 221 -3 396 284 20 0 chrX 55075070 55075172 -121898968 + L2 LINE L2 3202 3305 -8 1105 149 60 42 chrX 55075449 55075664 -121898476 + MER20 DNA MER1_type 1 219 0 644 226 5 91 chrX 55075676 55075736 -121898404 + MER5B DNA MER1_type 5 69 -109 2445 67 0 3 chrX 55075736 55076048 -121898092 + AluY SINE Alu 1 311 0 644 226 5 91 chrX 55076048 55076173 -121897967 + MER5B DNA MER1_type 69 174 -4 479 273 49 105 chrX 55077828 55078426 -121895714 + L2 LINE L2 2698 3255 -17 269 159 16 0 chrX 55078426 55078489 -121895651 + GA-rich Low_complexity Low_complexity 1 64 0 272 337 111 23 chrX 55078573 55078745 -121895395 - L2 LINE L2 -938 2376 2190 675 220 6 40 chrX 55079663 55079836 -121894304 + MIR SINE MIR 54 220 -42 539 184 107 0 chrX 55081355 55081458 -121892682 + L2 LINE L2 3199 3312 -1 298 252 206 23 chrX 55081520 55081651 -121892489 + MIR SINE MIR 31 185 -77 206 119 0 95 chrX 55081719 55081761 -121892379 - L3 LINE CR1 -339 1238 1201 465 215 114 43 chrX 55081786 55081954 -121892186 - MIR SINE MIR -57 151 19 259 250 146 0 chrX 55082002 55082098 -121892042 + MIR3 SINE MIR 78 187 -21 1101 209 5 14 chrX 55082539 55082749 -121891391 + MIR SINE MIR 5 212 -50 917 196 5 75 chrX 55082762 55082864 -121891276 + MER58A DNA MER1_type 1 109 -2311 1157 105 0 11 chrX 55082864 55083045 -121891095 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1937 139 7 0 chrX 55083048 55083336 -121890804 - AluSx SINE Alu -22 290 1 917 196 5 75 chrX 55083336 55083428 -121890712 + MER58A DNA MER1_type 111 185 -39 1638 165 0 0 chrX 55083436 55083702 -121890438 + AluJo SINE Alu 3 268 -44 213 94 0 0 chrX 55083716 55083748 -121890392 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 213 143 0 48 chrX 55083798 55083840 -121890300 + MIR SINE MIR 223 262 0 496 268 35 18 chrX 55083860 55084006 -121890134 - MIR SINE MIR -57 151 2 190 246 0 66 chrX 55084664 55084725 -121889415 + MIR3 SINE MIR 144 200 -8 305 62 21 0 chrX 55084882 55084930 -121889210 + (TG)n Simple_repeat Simple_repeat 1 49 0 747 297 25 25 chrX 55085331 55085570 -121888570 + MIR SINE MIR 21 259 -3 216 67 0 0 chrX 55085637 55085667 -121888473 + (TG)n Simple_repeat Simple_repeat 1 30 0 493 294 0 43 chrX 55086954 55087138 -121887002 + (ATGGTG)n Simple_repeat Simple_repeat 1 176 0 213 369 9 9 chrX 55087156 55087267 -121886873 + (ATG)n Simple_repeat Simple_repeat 1 111 0 * 215 269 13 39 chrX 55087194 55087272 -121886868 + (TAG)n Simple_repeat Simple_repeat 2 77 0 191 256 6 39 chrX 55087275 55087455 -121886685 + (ATGGTG)n Simple_repeat Simple_repeat 4 177 0 386 336 133 19 chrX 55087736 55087992 -121886148 + L3b LINE CR1 1296 1580 -3 212 167 0 0 chrX 55088063 55088099 -121886041 + GA-rich Low_complexity Low_complexity 3 38 0 711 311 72 5 chrX 55088523 55088745 -121885395 + MIR SINE MIR 20 256 -6 530 224 33 46 chrX 55088961 55089113 -121885027 + MIR SINE MIR 72 221 -41 387 0 0 0 chrX 55090564 55090607 -121883533 + (TG)n Simple_repeat Simple_repeat 2 44 0 229 246 22 37 chrX 55090701 55090835 -121883305 + (GTGTG)n Simple_repeat Simple_repeat 2 133 0 467 219 0 22 chrX 55091207 55091385 -121882755 + GA-rich Low_complexity Low_complexity 2 175 0 280 301 68 34 chrX 55091436 55091612 -121882528 - L2 LINE L2 -86 3186 3005 337 314 25 17 chrX 55091778 55091896 -121882244 - L2 LINE L2 -2 3311 3193 924 151 0 0 chrX 55092061 55092213 -121881927 + AluJb SINE Alu 152 303 -9 837 268 7 26 chrX 55092215 55092484 -121881656 - L2 LINE L2 -144 3169 2906 1014 236 15 42 chrX 55092834 55093097 -121881043 - MIR SINE MIR 0 262 7 322 292 42 0 chrX 55093101 55093197 -121880943 - MIR SINE MIR -79 129 30 262 338 0 0 chrX 55093657 55093799 -121880341 + (TG)n Simple_repeat Simple_repeat 1 142 0 343 242 33 0 chrX 55094179 55094270 -121879870 - LTR33A LTR ERVL 0 523 430 984 263 4 13 chrX 55094272 55094508 -121879632 + MIR SINE MIR 29 262 0 489 307 16 42 chrX 55094891 55095080 -121879060 - MIR SINE MIR -65 197 14 204 314 145 16 chrX 55095100 55095224 -121878916 + L2 LINE L2 3124 3263 -9 878 302 42 4 chrX 55095239 55095504 -121878636 + Charlie8 DNA MER1_type 2 276 -2141 502 305 52 19 chrX 55096070 55096280 -121877860 - MIR SINE MIR -12 250 34 349 287 134 16 chrX 55096390 55096637 -121877503 + L2 LINE L2 2460 2735 -579 264 333 91 0 chrX 55096716 55096848 -121877292 + L2 LINE L2 2949 3092 -180 906 241 27 31 chrX 55096963 55097224 -121876916 + MIR SINE MIR 2 261 -1 314 216 27 0 chrX 55097954 55098028 -121876112 + MIR3 SINE MIR 109 184 -24 264 217 130 22 chrX 55098116 55098208 -121875932 + MIR SINE MIR 127 228 -34 449 268 195 32 chrX 55098342 55098532 -121875608 - MIR SINE MIR -31 231 11 398 344 25 6 chrX 55098618 55098781 -121875359 - MIR3 SINE MIR -15 193 28 466 260 0 0 chrX 55099196 55099296 -121874844 + MIR SINE MIR 158 257 -5 257 332 46 50 chrX 55099337 55099594 -121874546 + L2 LINE L2 2921 3176 -96 434 250 52 22 chrX 55099594 55099730 -121874410 + MIR SINE MIR 2 141 -121 229 306 37 28 chrX 55100335 55100443 -121873697 + MIR SINE MIR 36 144 -64 381 147 15 0 chrX 55100447 55100515 -121873625 + L2 LINE L2 2583 2651 -663 1788 206 22 22 chrX 55100515 55100874 -121873266 - MSTD LTR MaLR -3 393 35 901 167 0 0 chrX 55100878 55101022 -121873118 + AluJb SINE Alu 135 278 -34 183 42 0 0 chrX 55101025 55101049 -121873091 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1896 155 44 0 chrX 55101071 55101387 -121872753 - MSTD-int LTR MaLR 0 1735 1406 546 175 41 0 chrX 55101397 55101494 -121872646 - MSTC LTR MaLR -324 104 4 4639 111 172 95 chrX 55101495 55102915 -121871225 + pTR5 LTR ERV1 743 2438 0 684 246 18 0 chrX 55102928 55103095 -121871045 + L2 LINE L2 2644 2813 -501 1005 186 6 0 chrX 55103097 55103269 -121870871 - MER5B DNA MER1_type -5 173 1 1781 224 45 87 chrX 55103270 55103802 -121870338 + L2 LINE L2 2804 3313 0 525 318 23 11 chrX 55103805 55103981 -121870159 + MIR SINE MIR 13 190 -72 6705 207 86 19 chrX 55104119 55106040 -121868100 + L1MB7 LINE L1 5 2040 -4606 1381 236 76 31 chrX 55106094 55106728 -121867412 + L1MB7 LINE L1 2260 2864 -3780 1865 134 0 21 chrX 55106728 55107055 -121867085 - AluJb SINE Alu 0 321 1 1381 236 76 31 chrX 55107055 55107371 -121866769 + L1MB7 LINE L1 2864 4879 -1765 738 93 0 0 chrX 55107372 55107479 -121866661 + AluY SINE Alu 205 311 0 4102 186 46 13 chrX 55107479 55108419 -121865721 + L1MB7 LINE L1 4869 5777 -899 305 47 23 0 chrX 55108419 55108462 -121865678 + (CA)n Simple_repeat Simple_repeat 2 45 0 4102 186 46 13 chrX 55108462 55108726 -121865414 + L1MB7 LINE L1 5777 6108 -568 1022 217 4 16 chrX 55108726 55108955 -121865185 + L1MB7 LINE L1 6426 6666 -16 7225 204 48 41 chrX 55108962 55110173 -121863967 - L1MD2 LINE L1 -52 6190 4989 1799 137 51 7 chrX 55110173 55110465 -121863675 - AluJb SINE Alu -7 305 1 7225 204 48 41 chrX 55110465 55112275 -121861865 - L1MD2 LINE L1 -1253 4989 3140 819 147 7 7 chrX 55112278 55112414 -121861726 - L1MC1 LINE L1 -2 6611 6476 8889 205 52 24 chrX 55112418 55113529 -121860611 - L1MC1 LINE L1 -234 6379 5300 4859 144 5 20 chrX 55113529 55113891 -121860249 - L1MA4 LINE L1 -1 6299 5933 189 0 0 0 chrX 55113891 55113912 -121860228 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1680 140 25 18 chrX 55113912 55114191 -121859949 - AluSx SINE Alu -30 282 2 4859 144 5 20 chrX 55114191 55114669 -121859471 - L1MA4 LINE L1 -365 5935 5471 8889 205 52 24 chrX 55114669 55117001 -121857139 - L1MC1 LINE L1 -1313 5300 2838 1892 148 66 13 chrX 55117054 55117432 -121856708 - L1MC1 LINE L1 -4008 2418 2021 2665 175 42 74 chrX 55117432 55118226 -121855914 + Tigger3b DNA MER2_type 2 769 -462 13711 176 70 19 chrX 55118231 55118832 -121855308 + L1MA9 LINE L1 3320 3889 -3842 2127 147 0 0 chrX 55118832 55119144 -121854996 - AluSx SINE Alu 0 312 1 13711 176 70 19 chrX 55119144 55121735 -121852405 + L1MA9 LINE L1 3889 6792 -939 1759 203 28 8 chrX 55121735 55122090 -121852050 - MLT1A1 LTR MaLR 0 365 4 13711 176 70 19 chrX 55122090 55123076 -121851064 + L1MA9 LINE L1 6792 7726 -5 4165 204 4 17 chrX 55123088 55124018 -121850122 + L1M4 LINE L1 4369 5286 -860 744 145 0 35 chrX 55124020 55124165 -121849975 + MLT2C1 LTR ERVL 1 140 -257 679 179 5 33 chrX 55124167 55124351 -121849789 + GA-rich Low_complexity Low_complexity 2 180 0 2704 151 38 11 chrX 55124357 55124807 -121849333 - L1MC1 LINE L1 -5929 497 36 828 217 0 10 chrX 55124827 55125034 -121849106 - L1MDa LINE L1 -3005 3535 3331 6855 209 132 36 chrX 55125041 55127055 -121847085 - L1MDa LINE L1 -4202 2338 108 502 40 14 14 chrX 55127055 55127129 -121847011 + (TAGA)n Simple_repeat Simple_repeat 2 75 0 6855 209 132 36 chrX 55127129 55127243 -121846897 - L1MDa LINE L1 -6432 108 6 195 266 0 31 chrX 55128240 55128304 -121845836 + MIR SINE MIR 90 151 -111 790 299 71 25 chrX 55129045 55129369 -121844771 - L2 LINE L2 0 3272 2934 261 265 71 0 chrX 55130012 55130110 -121844030 - MIR3 SINE MIR -54 154 50 257 273 176 36 chrX 55130177 55130342 -121843798 + MIR SINE MIR 15 202 -60 512 277 54 12 chrX 55131090 55131256 -121842884 + MIR SINE MIR 15 187 -75 180 245 0 19 chrX 55131291 55131344 -121842796 - MIR SINE MIR -103 159 108 328 230 14 0 chrX 55132436 55132510 -121841630 + MIR SINE MIR 188 262 0 328 279 13 58 chrX 55133556 55133710 -121840430 + MIR3 SINE MIR 51 197 -11 264 213 0 0 chrX 55133924 55133985 -121840155 + (TG)n Simple_repeat Simple_repeat 1 61 0 292 270 0 0 chrX 55134235 55134298 -121839842 - L2 LINE L2 0 3313 3251 192 314 0 0 chrX 55134300 55134370 -121839770 + MIR SINE MIR 182 251 -11 844 178 187 27 chrX 55134394 55134619 -121839521 - MIR SINE MIR 0 262 2 670 214 57 38 chrX 55135532 55135742 -121838398 + MIR SINE MIR 49 262 0 318 290 32 0 chrX 55136158 55136251 -121837889 + MIR SINE MIR 71 166 -96 504 328 29 4 chrX 55136342 55136583 -121837557 + L2 LINE L2 2509 2755 -559 603 242 9 58 chrX 55136624 55136847 -121837293 + MIR SINE MIR 21 232 -30 370 363 114 18 chrX 55136880 55137153 -121836987 + L2 LINE L2 2974 3272 0 256 264 14 14 chrX 55137703 55137775 -121836365 + GA-rich Low_complexity Low_complexity 2 73 0 309 327 42 5 chrX 55138285 55138499 -121835641 - MIR SINE MIR -11 251 30 254 239 11 119 chrX 55138612 55138788 -121835352 - MIR3 SINE MIR -16 192 36 1000 112 39 12 chrX 55140479 55140821 -121833319 + CT-rich Low_complexity Low_complexity 2 528 0 960 271 70 13 chrX 55141702 55142363 -121831777 - L2 LINE L2 -24 3289 2598 198 103 0 0 chrX 55143212 55143241 -121830899 + (CAA)n Simple_repeat Simple_repeat 2 30 0 759 265 14 0 chrX 55143242 55143453 -121830687 - MIR SINE MIR 0 262 49 333 214 10 41 chrX 55144260 55144358 -121829782 - MIR3 SINE MIR -53 155 61 587 290 28 42 chrX 55144474 55144688 -121829452 + MIR SINE MIR 31 241 -21 349 322 84 5 chrX 55146181 55146395 -121827745 - MIR SINE MIR -11 251 21 2301 100 0 0 chrX 55146439 55146728 -121827412 + AluSx SINE Alu 1 289 -23 861 250 10 5 chrX 55146728 55146936 -121827204 + MIR SINE MIR 22 230 -32 503 243 0 0 chrX 55147141 55147252 -121826888 + L1ME LINE L1 5619 5729 -392 297 0 0 0 chrX 55147785 55147818 -121826322 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1269 265 23 31 chrX 55147820 55148571 -121825569 - L2 LINE L2 -13 3300 2555 214 136 23 23 chrX 55148593 55148637 -121825503 + (CTATT)n Simple_repeat Simple_repeat 4 47 0 389 210 0 12 chrX 55148782 55148863 -121825277 + L2 LINE L2 3192 3271 -42 354 45 0 0 chrX 55148877 55148921 -121825219 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 1963 254 180 25 chrX 55149804 55150630 -121823510 + HAL1 LINE L1 1 954 -1553 656 304 29 10 chrX 55150635 55150842 -121823298 - MLT1I LTR MaLR -36 373 163 3038 233 93 32 chrX 55150855 55151827 -121822313 + HAL1 LINE L1 1431 2461 -46 273 288 0 23 chrX 55151847 55151979 -121822161 - L1MC/D LINE L1 -928 5500 5372 763 293 45 31 chrX 55152016 55152306 -121821834 - L2 LINE L2 0 3313 3020 973 278 28 132 chrX 55152449 55153471 -121820669 - L1MC/D LINE L1 -913 5302 4281 12984 175 45 52 chrX 55153471 55154061 -121820079 - L1MC3 LINE L1 0 7785 7193 288 243 36 54 chrX 55154061 55154172 -121819968 - MLT1F1 LTR MaLR -434 133 25 12984 175 45 52 chrX 55154172 55158270 -121815870 - L1MC3 LINE L1 -592 7193 3025 1758 195 37 3 chrX 55158271 55158594 -121815546 + MER7A DNA MER2_type 1 332 -14 834 165 33 11 chrX 55158600 55158782 -121815358 - L1MC3 LINE L1 -3123 3023 2838 546 262 93 72 chrX 55158775 55159259 -121814881 - L1MC/D LINE L1 -1829 4386 3893 * 271 208 223 31 chrX 55159268 55159398 -121814742 + MIR SINE MIR 49 203 -59 212 114 45 23 chrX 55159405 55159449 -121814691 + (CATA)n Simple_repeat Simple_repeat 3 47 0 1960 259 75 18 chrX 55159757 55160318 -121813822 - MLT1E LTR MaLR 0 593 1 850 302 128 26 chrX 55160321 55161695 -121812445 - L1MEc LINE L1 -2634 3581 2114 300 327 80 0 chrX 55162938 55163051 -121811089 + MER91C DNA MER1_type 2 123 -17 228 312 83 18 chrX 55163230 55163339 -121810801 - MIR SINE MIR -136 126 11 1397 286 135 6 chrX 55163511 55164021 -121810119 - MLT1K LTR MaLR 0 588 13 330 200 0 0 chrX 55164036 55164101 -121810039 - MIR SINE MIR -63 145 81 642 272 0 0 chrX 55164282 55164418 -121809722 + MIR3 SINE MIR 30 165 -43 263 253 221 0 chrX 55165327 55165422 -121808718 - L3b LINE CR1 -200 1383 1268 261 213 49 16 chrX 55166573 55166634 -121807506 + L3b LINE CR1 1330 1392 -191 373 333 44 20 chrX 55166882 55167059 -121807081 - MIR3 SINE MIR -61 147 5 367 302 127 28 chrX 55167615 55167827 -121806313 - MIR SINE MIR -24 238 6 699 239 124 17 chrX 55169394 55169628 -121804512 - MIR SINE MIR 0 262 4 303 327 164 14 chrX 55169978 55170259 -121803881 - L2 LINE L2 -687 2627 2305 198 328 0 17 chrX 55170400 55170458 -121803682 - L2 LINE L2 -556 2758 2702 384 269 39 15 chrX 55171326 55171456 -121802684 - MIR3 SINE MIR -18 190 58 269 224 0 9 chrX 55174260 55174376 -121799764 + CT-rich Low_complexity Low_complexity 1 115 0 327 315 79 24 chrX 55174884 55175011 -121799129 + L2 LINE L2 3133 3266 -6 521 217 80 36 chrX 55175023 55175161 -121798979 - L2 LINE L2 0 3313 3170 915 232 5 0 chrX 55175672 55175862 -121798278 + MER63A DNA MER1_type 2 192 -18 354 23 0 0 chrX 55176036 55176079 -121798061 + (TG)n Simple_repeat Simple_repeat 2 44 0 1608 196 44 3 chrX 55176135 55176431 -121797709 + AluJo SINE Alu 1 308 -4 807 204 23 6 chrX 55176432 55176604 -121797536 - MIR SINE MIR -8 254 80 276 354 16 4 chrX 55177668 55177812 -121796328 + MIR SINE MIR 1 146 -62 285 293 16 81 chrX 55178112 55178235 -121795905 + L2 LINE L2 3154 3268 -4 * 458 216 93 67 chrX 55178230 55178424 -121795716 - MIR SINE MIR -58 204 6 217 320 24 48 chrX 55178793 55178918 -121795222 - L3b LINE CR1 -201 1382 1261 326 300 40 0 chrX 55179041 55179141 -121794999 + MIR SINE MIR 47 150 -112 603 240 136 22 chrX 55179932 55180424 -121793716 + L1ME4a LINE L1 5452 6037 -84 678 240 7 13 chrX 55180451 55180601 -121793539 - MIR SINE MIR -40 222 74 300 164 41 14 chrX 55180602 55180675 -121793465 + L1ME4a LINE L1 6047 6121 0 420 307 29 7 chrX 55181613 55181753 -121792387 + MIR SINE MIR 45 187 -75 403 246 98 66 chrX 55182023 55182206 -121791934 - L3 LINE CR1 -45 1532 1344 268 258 90 11 chrX 55182811 55182900 -121791240 - MIR SINE MIR -132 130 35 360 155 0 0 chrX 55183815 55183886 -121790254 + (TG)n Simple_repeat Simple_repeat 1 71 0 366 258 57 40 chrX 55184572 55184696 -121789444 - MIR SINE MIR -65 143 18 584 273 143 60 chrX 55184757 55185264 -121788876 + L2 LINE L2 2712 3238 -34 909 222 70 4 chrX 55185288 55185518 -121788622 - MIR SINE MIR -6 256 12 442 240 88 0 chrX 55185856 55185981 -121788159 + MIR SINE MIR 59 194 -68 528 97 35 18 chrX 55186739 55186852 -121787288 + CT-rich Low_complexity Low_complexity 4 118 0 216 149 0 0 chrX 55186904 55186951 -121787189 + (CTCG)n Simple_repeat Simple_repeat 2 48 0 427 326 33 33 chrX 55187068 55187249 -121786891 + MIR3 SINE MIR 19 199 -9 4652 238 56 24 chrX 55188097 55189704 -121784436 - L1MC/D LINE L1 -534 5636 4020 1963 116 3 81 chrX 55189704 55190024 -121784116 + AluSx SINE Alu 1 295 -17 4652 238 56 24 chrX 55190024 55190306 -121783834 - L1MC/D LINE L1 -2150 4020 3749 213 39 0 0 chrX 55190307 55190333 -121783807 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 821 233 0 0 chrX 55190333 55190479 -121783661 - FRAM SINE Alu -30 146 1 7352 210 42 28 chrX 55190488 55190666 -121783474 - L1MD1 LINE L1 -1 6241 6067 1634 157 20 57 chrX 55190666 55190802 -121783338 + AluJo SINE Alu 15 154 -158 2204 87 4 0 chrX 55190802 55191077 -121783063 + AluSq SINE Alu 21 296 -17 1634 157 20 57 chrX 55191077 55191240 -121782900 + AluJo SINE Alu 154 303 -9 7352 210 42 28 chrX 55191240 55192417 -121781723 - L1MD1 LINE L1 -175 6067 4909 1954 137 3 14 chrX 55192417 55192739 -121781401 + AluJb SINE Alu 1 319 0 7352 210 42 28 chrX 55192739 55192802 -121781338 - L1MD1 LINE L1 -1333 4909 4848 189 0 0 0 chrX 55192802 55192823 -121781317 + (TC)n Simple_repeat Simple_repeat 2 22 0 7352 210 42 28 chrX 55192823 55193913 -121780227 - L1MD1 LINE L1 -1394 4848 3673 361 36 36 0 chrX 55193913 55193968 -121780172 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 7352 210 42 28 chrX 55193968 55194470 -121779670 - L1MD1 LINE L1 -2569 3673 3180 627 268 11 59 chrX 55194469 55194741 -121779399 - L1M4 LINE L1 -2318 3828 3570 * 288 328 109 6 chrX 55194821 55194995 -121779145 - MIR SINE MIR -11 251 60 254 248 195 18 chrX 55194999 55195112 -121779028 - MIR SINE MIR -13 249 117 632 312 64 14 chrX 55195504 55195722 -121778418 + MIR SINE MIR 20 248 -14 466 281 102 0 chrX 55195905 55196033 -121778107 - MIR SINE MIR -78 184 44 945 251 68 10 chrX 55196494 55196789 -121777351 - L2 LINE L2 -4 3309 2998 383 219 17 92 chrX 55197342 55197461 -121776679 - MIR3 SINE MIR -18 190 81 420 289 124 24 chrX 55197591 55197743 -121776397 + MIR SINE MIR 30 213 -49 189 0 0 0 chrX 55197743 55197764 -121776376 + (TA)n Simple_repeat Simple_repeat 1 21 0 420 289 124 24 chrX 55197764 55197820 -121776320 + MIR SINE MIR 213 262 0 422 273 53 0 chrX 55197839 55197971 -121776169 + MIR SINE MIR 13 151 -111 641 160 104 0 chrX 55197995 55198101 -121776039 + AluJb SINE Alu 2 118 -194 231 103 0 0 chrX 55198102 55198141 -121775999 + (TAAA)n Simple_repeat Simple_repeat 4 42 0 586 234 30 42 chrX 55198844 55199011 -121775129 - MIR3 SINE MIR -6 202 38 264 278 244 0 chrX 55199231 55199321 -121774819 + MIR SINE MIR 32 143 -65 609 241 283 32 chrX 55199485 55199888 -121774252 - L2 LINE L2 -358 2956 2453 930 260 126 40 chrX 55199936 55200578 -121773562 + L2 LINE L2 2617 3311 -2 433 303 0 0 chrX 55200578 55200687 -121773453 - MIR SINE MIR -49 213 105 504 32 0 0 chrX 55200740 55200802 -121773338 + (CA)n Simple_repeat Simple_repeat 1 62 0 476 271 30 42 chrX 55200962 55201128 -121773012 + MIR SINE MIR 20 183 -79 503 173 9 0 chrX 55201257 55201367 -121772773 + (TCCA)n Simple_repeat Simple_repeat 2 112 0 255 322 11 11 chrX 55201370 55201457 -121772683 - L2 LINE L2 0 3272 3186 522 276 104 58 chrX 55201724 55202032 -121772108 - L2 LINE L2 -563 2751 2430 310 138 46 11 chrX 55202314 55202401 -121771739 + CT-rich Low_complexity Low_complexity 2 91 0 201 129 0 0 chrX 55202470 55202501 -121771639 + (TG)n Simple_repeat Simple_repeat 2 32 0 9556 50 0 1 chrX 55202617 55204567 -121769573 + L1PA6 LINE L1 4205 6153 -1 294 381 8 0 chrX 55204883 55205001 -121769139 - L2 LINE L2 -237 3035 2917 235 325 25 0 chrX 55205113 55205193 -121768947 + L1MC/D LINE L1 5589 5670 -2138 1798 137 77 15 chrX 55205398 55205637 -121768503 + L1MD3 LINE L1 6637 6904 -1091 261 57 0 0 chrX 55205637 55205672 -121768468 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 1798 137 77 15 chrX 55205672 55205768 -121768372 + L1MD3 LINE L1 6904 6993 -1002 * 2125 159 12 21 chrX 55205766 55206194 -121767946 - L1MC3 LINE L1 0 7785 7362 7217 27 2 0 chrX 55206198 55207084 -121767056 - L1P LINE L1 -868 5278 4391 4059 29 0 6 chrX 55207206 55207683 -121766457 + L1PA3 LINE L1 5682 6155 0 609 193 143 0 chrX 55207700 55207840 -121766300 - L1MC3 LINE L1 -437 7348 7189 270 329 0 0 chrX 55207841 55207920 -121766220 - MLT1F1 LTR MaLR -450 117 39 237 77 0 0 chrX 55207920 55207959 -121766181 + L1MC4a LINE L1 6927 6965 -843 1046 112 68 0 chrX 55207960 55208121 -121766019 + L1PA15 LINE L1 5988 6159 -6 3254 220 41 6 chrX 55208122 55208900 -121765240 + L1MC4a LINE L1 7003 7807 -1 405 0 0 0 chrX 55209280 55209325 -121764815 + (TG)n Simple_repeat Simple_repeat 2 46 0 271 342 7 47 chrX 55209841 55209990 -121764150 - L3 LINE CR1 -20 1557 1415 210 37 0 0 chrX 55210645 55210672 -121763468 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1785 150 29 11 chrX 55210684 55210964 -121763176 - AluJb SINE Alu -23 289 5 184 242 194 0 chrX 55210989 55211051 -121763089 + MIR SINE MIR 77 150 -112 228 245 0 15 chrX 55211118 55211180 -121762960 + L2 LINE L2 3137 3225 -88 618 258 44 13 chrX 55211672 55211831 -121762309 - MIR SINE MIR -52 210 47 282 296 63 11 chrX 55212005 55212110 -121762030 - MIR SINE MIR -92 116 10 545 326 76 17 chrX 55212495 55212731 -121761409 - MIR SINE MIR -12 250 1 1684 200 38 18 chrX 55213374 55213714 -121760426 - MLT1A1 LTR MaLR 0 365 19 229 267 10 99 chrX 55213890 55213991 -121760149 - L3 LINE CR1 -11 1566 1475 215 345 50 7 chrX 55214003 55214142 -121759998 - L2 LINE L2 -292 2980 2836 395 308 8 8 chrX 55214251 55214371 -121759769 - MIR3 SINE MIR -15 193 74 239 222 14 83 chrX 55214515 55214587 -121759553 + L2 LINE L2 3246 3312 -1 591 307 27 0 chrX 55214629 55214779 -121759361 + MER91A DNA MER1_type 43 196 0 188 316 66 0 chrX 55214935 55215011 -121759129 - L3 LINE CR1 -597 980 900 328 333 19 0 chrX 55215145 55215253 -121758887 - MIR SINE MIR -68 140 31 457 217 30 101 chrX 55216110 55216308 -121757832 + MIR3 SINE MIR 22 205 -3 283 337 0 0 chrX 55266427 55266528 -121707612 + MIR SINE MIR 30 130 -78 201 74 0 0 chrX 55267157 55267184 -121706956 + (TAA)n Simple_repeat Simple_repeat 3 29 0 982 185 32 0 chrX 55267187 55267376 -121706764 - MIR SINE MIR -10 252 58 549 285 12 23 chrX 55267501 55267673 -121706467 + MIR SINE MIR 50 219 -43 254 279 0 0 chrX 55267786 55267847 -121706293 - ORSL DNA AcHobo -13 262 202 291 85 0 0 chrX 55268363 55268410 -121705730 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 286 252 206 0 chrX 55268854 55268985 -121705155 + MIR SINE MIR 67 224 -38 384 317 30 42 chrX 55270057 55270224 -121703916 + MIR SINE MIR 33 197 -65 775 252 141 30 chrX 55270498 55270732 -121703408 - MIR SINE MIR 0 262 3 373 182 10 88 chrX 55270732 55270828 -121703312 - MIR3 SINE MIR -74 134 48 208 384 45 17 chrX 55271047 55271224 -121702916 - L2 LINE L2 -197 3075 2894 206 286 53 38 chrX 55271373 55271492 -121702648 - MIR3 SINE MIR -29 179 56 2248 82 14 0 chrX 55271492 55271784 -121702356 - AluSg SINE Alu -13 297 2 206 286 53 38 chrX 55271784 55271797 -121702343 - MIR3 SINE MIR -152 56 45 417 281 78 0 chrX 55272748 55272876 -121701264 + MIR SINE MIR 117 254 -8 533 291 20 7 chrX 55272956 55273104 -121701036 - MIR3 SINE MIR -18 190 41 519 107 0 0 chrX 55273564 55273648 -121700492 + (TG)n Simple_repeat Simple_repeat 2 85 0 319 300 108 0 chrX 55273762 55273892 -121700248 + MER5A DNA MER1_type 9 152 -37 667 291 101 3 chrX 55274008 55274324 -121699816 + L2 LINE L2 2026 2372 -942 311 115 19 0 chrX 55274879 55274931 -121699209 + L2 LINE L2 3259 3311 -2 212 294 128 18 chrX 55275031 55275140 -121699000 + L2 LINE L2 3144 3264 -8 * 229 247 47 35 chrX 55275130 55275215 -121698925 - L2 LINE L2 -9 3304 3219 323 350 115 16 chrX 55275432 55275615 -121698525 - MIR SINE MIR -48 214 14 724 195 31 152 chrX 55275758 55276014 -121698126 + MIR SINE MIR 2 226 -36 417 39 0 0 chrX 55277030 55277081 -121697059 + (CA)n Simple_repeat Simple_repeat 1 51 0 349 219 76 19 chrX 55277310 55277415 -121696725 - L3 LINE CR1 -69 1508 1398 194 196 39 0 chrX 55277676 55277727 -121696413 - MIR SINE MIR -75 133 81 301 293 26 9 chrX 55277880 55277996 -121696144 - L3 LINE CR1 -163 1414 1297 293 306 7 62 chrX 55278143 55278287 -121695853 - L3 LINE CR1 -295 1282 1147 276 130 0 0 chrX 55279249 55279295 -121694845 + (TTCC)n Simple_repeat Simple_repeat 1 46 0 272 259 22 44 chrX 55279298 55279433 -121694707 + (TCTCTG)n Simple_repeat Simple_repeat 1 132 0 197 226 21 0 chrX 55279446 55279539 -121694601 + (TCTCTG)n Simple_repeat Simple_repeat 6 100 0 180 179 0 0 chrX 55279626 55279665 -121694475 + CT-rich Low_complexity Low_complexity 2 40 0 570 145 11 28 chrX 55279946 55280076 -121694064 - MIR SINE MIR -62 146 45 293 299 47 9 chrX 55280347 55280454 -121693686 - MIR3 SINE MIR -12 196 86 188 0 74 0 chrX 55280881 55280908 -121693232 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 229 314 0 68 chrX 55281024 55281142 -121692998 - MIR SINE MIR -56 206 97 284 353 77 18 chrX 55282199 55282369 -121691771 - MIR SINE MIR -67 195 16 303 244 0 33 chrX 55282875 55282965 -121691175 - MIR SINE MIR -58 150 64 590 215 64 99 chrX 55283037 55283158 -121690982 + MER112 DNA MER1_type 36 147 -113 1715 150 38 14 chrX 55283158 55283451 -121690689 - AluJo SINE Alu -12 300 1 590 215 64 99 chrX 55283451 55283562 -121690578 + MER112 DNA MER1_type 147 260 0 269 297 0 0 chrX 55283932 55284006 -121690134 + (CA)n Simple_repeat Simple_repeat 2 75 0 887 311 20 0 chrX 55284843 55285094 -121689046 + MIR SINE MIR 6 261 -1 250 312 18 121 chrX 55285137 55285477 -121688663 + L2 LINE L2 2921 3225 -47 2416 303 109 12 chrX 55285525 55286568 -121687572 + L3 LINE CR1 70 1213 -364 359 293 142 24 chrX 55286629 55286834 -121687306 - MIR SINE MIR -19 243 15 315 296 87 9 chrX 55286830 55286945 -121687195 + L3 LINE CR1 1251 1374 -203 * 684 218 16 36 chrX 55286980 55287173 -121686967 - L1MC5 LINE L1 -26 7935 7747 196 300 11 56 chrX 55287178 55287268 -121686872 + L3 LINE CR1 1367 1452 -125 366 100 0 0 chrX 55287531 55287591 -121686549 + (CA)n Simple_repeat Simple_repeat 2 61 0 189 333 135 0 chrX 55288272 55288383 -121685757 + MIR SINE MIR 122 247 -15 198 324 9 67 chrX 55288791 55288896 -121685244 + L2 LINE L2 3141 3239 -74 296 347 11 0 chrX 55289257 55289352 -121684788 + L3b LINE CR1 1268 1363 -220 606 265 26 52 chrX 55289704 55289934 -121684206 - MIR SINE MIR -28 234 11 398 260 29 98 chrX 55291117 55291290 -121682850 - MIR3 SINE MIR -8 200 40 449 292 8 17 chrX 55291519 55291694 -121682446 - MIR SINE MIR -59 203 34 488 223 77 0 chrX 55293471 55293601 -121680539 + MIR SINE MIR 49 188 -74 198 306 122 10 chrX 55293640 55293738 -121680402 - L2 LINE L2 -23 3249 3141 223 365 0 12 chrX 55294009 55294094 -121680046 + (TG)n Simple_repeat Simple_repeat 2 85 0 280 197 33 0 chrX 55294408 55294469 -121679671 - MIR SINE MIR -101 161 99 418 266 56 0 chrX 55295534 55295677 -121678463 + L1MC4a LINE L1 5725 5875 -1933 831 174 8 0 chrX 55295682 55295814 -121678326 - FLAM_A SINE Alu 0 133 1 2271 84 7 0 chrX 55295888 55296185 -121677955 + AluSx SINE Alu 1 299 -13 1761 133 0 50 chrX 55297076 55297393 -121676747 + AluJb SINE Alu 11 311 -1 389 304 53 12 chrX 55297585 55297756 -121676384 - MIR SINE MIR -48 214 37 310 271 120 24 chrX 55298747 55298951 -121675189 + MIR SINE MIR 31 262 0 * 821 246 8 65 chrX 55298916 55299176 -121674964 - MIR SINE MIR -13 249 5 2381 118 25 0 chrX 55299176 55299533 -121674607 + MER47A DNA MER2_type 1 366 0 183 80 0 0 chrX 55300040 55300065 -121674075 + (CGG)n Simple_repeat Simple_repeat 3 27 0 232 237 0 34 chrX 55300675 55300734 -121673406 + MIR SINE MIR 91 147 -61 423 315 0 28 chrX 55301405 55301548 -121672592 + MIR3 SINE MIR 23 161 -47 347 105 18 0 chrX 55301974 55302031 -121672109 + (TC)n Simple_repeat Simple_repeat 2 59 0 193 345 0 35 chrX 55302776 55302863 -121671277 - L2 LINE L2 -184 3088 3005 332 222 37 0 chrX 55302923 55303004 -121671136 - MIR SINE MIR -56 206 123 285 313 141 0 chrX 55303443 55303571 -121670569 + L2 LINE L2 3125 3270 -2 450 351 152 35 chrX 55304595 55305607 -121668533 + L2 LINE L2 1710 2840 -474 698 240 21 52 chrX 55305729 55305921 -121668219 + MIR SINE MIR 77 262 0 568 257 34 51 chrX 55306153 55306328 -121667812 - MIR SINE MIR -71 191 20 275 286 12 12 chrX 55306351 55306435 -121667705 + L3 LINE CR1 1151 1234 -343 217 250 79 0 chrX 55306669 55306745 -121667395 - MIR SINE MIR -74 134 53 298 318 68 8 chrX 55306901 55307033 -121667107 + MIR SINE MIR 110 249 -13 549 306 31 30 chrX 55307075 55307309 -121666831 + MIR SINE MIR 2 235 -27 649 223 233 4 chrX 55307326 55307543 -121666597 + MIR SINE MIR 1 262 0 21 0 0 0 chrX 55308309 55308330 -121665810 + GC_rich Low_complexity Low_complexity 1 21 0 324 266 110 19 chrX 55308896 55309050 -121665090 - MIR SINE MIR -55 207 40 473 163 22 11 chrX 55309353 55309445 -121664695 + MIR SINE MIR 24 116 -92 372 326 0 84 chrX 55309574 55309752 -121664388 - MIR3 SINE MIR 0 208 46 34 24 0 0 chrX 55309845 55309886 -121664254 + AT_rich Low_complexity Low_complexity 1 41 0 2272 100 7 0 chrX 55310376 55310667 -121663473 - AluSx SINE Alu -19 293 1 440 229 9 18 chrX 55310707 55310816 -121663324 - MIR3 SINE MIR -2 206 99 2464 92 0 0 chrX 55311948 55312253 -121661887 - AluSx SINE Alu -7 305 1 320 293 41 41 chrX 55312262 55312409 -121661731 - MIR3 SINE MIR -46 162 16 328 270 88 38 chrX 55315064 55315223 -121658917 - MIR3 SINE MIR -21 187 21 354 80 0 0 chrX 55316065 55316081 -121658059 + (CA)n Simple_repeat Simple_repeat 1 66 0 354 80 0 0 chrX 55316081 55316131 -121658009 + (CA)n Simple_repeat Simple_repeat 1 50 0 731 255 179 5 chrX 55317148 55317360 -121656780 - MIR SINE MIR 0 262 14 1551 150 51 22 chrX 55317667 55317980 -121656160 - MER33 DNA MER1_type -2 322 1 345 321 123 31 chrX 55318078 55318240 -121655900 + MIR3 SINE MIR 16 192 -16 2049 146 0 13 chrX 55319065 55319381 -121654759 - AluJb SINE Alu 0 312 1 344 266 9 55 chrX 55319556 55319665 -121654475 + MIR SINE MIR 78 181 -81 21 0 0 0 chrX 55319989 55320010 -121654130 + AT_rich Low_complexity Low_complexity 1 21 0 597 237 64 29 chrX 55320060 55320233 -121653907 - MIR SINE MIR -76 186 8 930 222 43 10 chrX 55320296 55320503 -121653637 - MIR SINE MIR -36 226 13 2220 103 3 10 chrX 55320669 55320971 -121653169 - AluSx SINE Alu -12 300 1 299 289 220 23 chrX 55321029 55321247 -121652893 + MIR SINE MIR 2 262 0 349 330 0 0 chrX 55321909 55322006 -121652134 + C-rich Low_complexity Low_complexity 2 98 0 478 268 108 57 chrX 55322416 55322748 -121651392 + L2 LINE L2 2251 2599 -715 466 307 0 0 chrX 55322750 55322864 -121651276 - L2 LINE L2 0 3313 3200 1146 54 0 0 chrX 55322947 55323077 -121651063 + AluSq/x SINE Alu 1 130 -183 708 221 25 19 chrX 55323079 55323237 -121650903 + MIR SINE MIR 63 221 -41 22 0 0 0 chrX 55323251 55323273 -121650867 + AT_rich Low_complexity Low_complexity 1 22 0 389 273 11 0 chrX 55323523 55323611 -121650529 + MIR SINE MIR 42 130 -78 638 198 174 17 chrX 55323633 55323805 -121650335 - MIR SINE MIR -19 243 45 248 275 38 12 chrX 55323818 55323898 -121650242 + MIR SINE MIR 147 228 -34 396 264 168 0 chrX 55324187 55324342 -121649798 - MIR SINE MIR -12 250 70 180 0 0 0 chrX 55325270 55325290 -121648850 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 485 320 46 16 chrX 55325388 55325582 -121648558 - MIR SINE MIR -61 201 2 384 264 45 32 chrX 55325733 55325887 -121648253 - L1ME4a LINE L1 -15 6093 1180 440 35 17 0 chrX 55326161 55326219 -121647921 + (CA)n Simple_repeat Simple_repeat 1 59 0 308 253 40 50 chrX 55326333 55326432 -121647708 + L1M4 LINE L1 3083 3180 -2966 670 284 62 25 chrX 55326681 55326924 -121647216 - L1MC/D LINE L1 -2020 5788 5537 317 244 130 17 chrX 55327106 55327221 -121646919 + L2 LINE L2 3136 3263 -9 2351 81 0 34 chrX 55328639 55328960 -121645180 - AluSg SINE Alu 0 310 1 391 276 16 16 chrX 55329485 55329608 -121644532 - LTR67 LTR ERVL 0 557 435 428 189 90 18 chrX 55330223 55330334 -121643806 + ERVL LTR ERVL 5265 5383 -381 266 237 195 34 chrX 55330632 55330750 -121643390 - L1MC4a LINE L1 -1880 5997 5861 268 328 46 38 chrX 55330767 55331005 -121643135 - L1MC4a LINE L1 -494 5696 5457 799 286 77 25 chrX 55331007 55331412 -121642728 + L1MC4a LINE L1 5483 5908 -1900 222 279 0 0 chrX 55331459 55331520 -121642620 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 249 57 0 0 chrX 55331661 55331696 -121642444 + (CAGA)n Simple_repeat Simple_repeat 2 36 0 334 324 128 36 chrX 55331787 55332006 -121642134 - L1MC4a LINE L1 -4003 2393 2155 182 208 19 0 chrX 55336483 55336536 -121637604 + GA-rich Low_complexity Low_complexity 4 57 0 23 0 0 0 chrX 55337178 55337201 -121636939 + AT_rich Low_complexity Low_complexity 1 23 0 199 219 0 27 chrX 55337969 55338042 -121636098 + GA-rich Low_complexity Low_complexity 2 72 0 895 183 0 0 chrX 55338147 55338289 -121635851 + FRAM SINE Alu 9 150 -26 2012 147 10 7 chrX 55338543 55338849 -121635291 + AluJb SINE Alu 4 310 -2 305 225 79 11 chrX 55338849 55338933 -121635207 + L1MC4a LINE L1 5814 5903 -1905 262 317 19 29 chrX 55338938 55339146 -121634994 + L1M4 LINE L1 2426 2631 -3515 2050 149 3 3 chrX 55339157 55339452 -121634688 - AluSx SINE Alu -17 295 1 23 0 0 0 chrX 55339491 55339514 -121634626 + AT_rich Low_complexity Low_complexity 1 23 0 255 61 0 0 chrX 55339738 55339771 -121634369 + (TA)n Simple_repeat Simple_repeat 1 33 0 557 246 63 63 chrX 55340100 55340307 -121633833 - MLT1F1 LTR MaLR -263 304 98 4696 199 71 27 chrX 55340310 55341632 -121632508 - L1MCa LINE L1 -2742 3684 2421 2232 98 30 7 chrX 55341632 55341929 -121632211 - AluSx SINE Alu -8 304 1 1968 141 10 7 chrX 55341930 55342227 -121631913 - AluJo SINE Alu -12 300 3 4696 199 71 27 chrX 55342227 55342710 -121631430 - L1MCa LINE L1 -4004 2422 1801 467 252 0 31 chrX 55342712 55342839 -121631301 - MLT1F1 LTR MaLR -445 148 26 559 220 64 57 chrX 55342889 55343265 -121630875 - L1ME LINE L1 -586 5580 5212 368 297 30 55 chrX 55343276 55343478 -121630662 + L1ME LINE L1 5009 5205 -941 353 157 0 0 chrX 55343512 55343575 -121630565 + FLAM_A SINE Alu 63 115 -18 1226 266 72 46 chrX 55343597 55344255 -121629885 + L1ME2 LINE L1 5254 5938 -226 2126 110 3 0 chrX 55344393 55344711 -121629429 - AluSx SINE Alu 0 319 1 391 309 105 31 chrX 55346267 55346517 -121627623 - L1MC4a LINE L1 -1834 5974 5679 2137 159 47 16 chrX 55346517 55346901 -121627239 + MSTD LTR MaLR 1 396 0 391 309 105 31 chrX 55346901 55347068 -121627072 - L1MC4a LINE L1 -2129 5679 5526 309 214 0 45 chrX 55347188 55347277 -121626863 + LTR67 LTR ERVL 458 542 -15 624 283 52 9 chrX 55348237 55348459 -121625681 - MIR SINE MIR -7 255 19 477 284 13 39 chrX 55349304 55349459 -121624681 + MIR3 SINE MIR 51 201 -7 465 345 60 62 chrX 55349651 55350036 -121624104 + L2 LINE L2 2837 3220 -52 208 276 15 104 chrX 55350379 55350513 -121623627 + L2 LINE L2 3097 3218 -54 262 358 31 53 chrX 55350937 55351163 -121622977 + L2 LINE L2 2509 2729 -585 341 237 30 82 chrX 55351506 55351641 -121622499 - LTR67 LTR ERVL -2 555 428 241 294 208 32 chrX 55352033 55352476 -121621664 - L2 LINE L2 -338 2976 2456 1811 146 10 17 chrX 55352645 55352940 -121621200 - AluSx SINE Alu -19 293 1 766 263 69 12 chrX 55352956 55353203 -121620937 + L1ME LINE L1 5514 5774 -347 1007 156 46 41 chrX 55353735 55353953 -121620187 - MER20 DNA MER1_type 0 219 1 432 208 124 3 chrX 55354065 55354191 -121619949 + MIR SINE MIR 30 166 -63 326 316 17 29 chrX 55354197 55354371 -121619769 + L2 LINE L2 1629 1800 -1514 394 287 133 16 chrX 55354377 55354565 -121619575 + L2 LINE L2 2325 2534 -780 406 279 58 9 chrX 55354718 55354944 -121619196 - L1MC4a LINE L1 -131 5990 5752 616 311 82 69 chrX 55354985 55355360 -121618780 + L2 LINE L2 2528 2905 -367 2499 50 0 0 chrX 55355360 55355661 -121618479 - AluY SINE Alu -10 301 1 616 311 82 69 chrX 55355661 55355980 -121618160 + L2 LINE L2 2905 3218 -54 234 297 27 0 chrX 55355997 55356071 -121618069 + MIR SINE MIR 181 256 -6 344 312 164 7 chrX 55356169 55356461 -121617679 + L2 LINE L2 1925 2262 -1052 510 266 0 43 chrX 55356494 55356633 -121617507 + L2 LINE L2 3181 3313 0 454 268 38 56 chrX 55357467 55357680 -121616460 - L2 LINE L2 -110 3203 2995 219 114 0 0 chrX 55357884 55357919 -121616221 + (TAA)n Simple_repeat Simple_repeat 1 35 0 914 273 0 18 chrX 55357935 55358162 -121615978 - MIR SINE MIR -17 245 23 410 235 118 8 chrX 55358357 55358476 -121615664 + L2 LINE L2 3182 3313 0 542 316 36 0 chrX 55358711 55358879 -121615261 - MIR SINE MIR -41 221 48 258 32 0 0 chrX 55359078 55359109 -121615031 + (TCCC)n Simple_repeat Simple_repeat 2 32 0 390 259 117 12 chrX 55359149 55359311 -121614829 + MIR SINE MIR 13 191 -71 313 325 76 32 chrX 55359428 55359585 -121614555 - MIR SINE MIR -74 188 25 257 363 76 17 chrX 55360005 55360242 -121613898 - HAL1 LINE L1 -1027 1480 1230 398 257 61 116 chrX 55360329 55360679 -121613461 - L1MEd LINE L1 -5119 1010 694 343 247 203 39 chrX 55361320 55361502 -121612638 - L1ME LINE L1 -328 5793 5582 410 302 70 0 chrX 55361698 55361827 -121612313 - MIR SINE MIR -55 207 70 569 255 181 5 chrX 55362116 55362320 -121611820 + MIR SINE MIR 9 248 -14 190 287 37 37 chrX 55363326 55363434 -121610706 + L2 LINE L2 2123 2230 -1084 * 631 254 12 18 chrX 55363429 55363598 -121610542 - MIR SINE MIR 0 262 95 215 211 0 66 chrX 55363903 55363979 -121610161 + CT-rich Low_complexity Low_complexity 2 72 0 2008 153 47 3 chrX 55363982 55364342 -121609798 - L1MA6 LINE L1 0 6300 5925 247 315 65 9 chrX 55364824 55364932 -121609208 + MIR SINE MIR 79 192 -70 345 289 147 0 chrX 55365754 55365910 -121608230 - MIR3 SINE MIR 0 208 30 233 316 61 35 chrX 55366529 55366643 -121607497 + MIR3 SINE MIR 89 205 -3 222 118 0 0 chrX 55366763 55366797 -121607343 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 239 350 83 8 chrX 55366977 55367097 -121607043 - LTR67 LTR ERVL -2 555 427 210 313 47 0 chrX 55367932 55367996 -121606144 - MIR SINE MIR -148 114 48 232 299 15 0 chrX 55368114 55368181 -121605959 - MIR3 SINE MIR -6 202 135 194 330 106 0 chrX 55368210 55368304 -121605836 - MIR SINE MIR -69 139 36 250 267 79 50 chrX 55368892 55368993 -121605147 - MIR SINE MIR -112 150 47 1220 181 39 8 chrX 55369187 55369441 -121604699 - L1MDa LINE L1 -4491 2049 1788 340 348 55 18 chrX 55369505 55369669 -121604471 + MIR3 SINE MIR 36 205 -3 623 241 0 59 chrX 55370131 55370301 -121603839 + MIR SINE MIR 103 262 0 896 217 137 0 chrX 55370321 55370547 -121603593 + MIR SINE MIR 5 261 -1 528 268 0 7 chrX 55370922 55371060 -121603080 + MIR3 SINE MIR 45 181 -27 243 234 0 0 chrX 55371805 55371852 -121602288 + L3b LINE CR1 1289 1335 -248 450 311 79 27 chrX 55371930 55372311 -121601829 + L2 LINE L2 2644 3040 -232 514 285 38 48 chrX 55372361 55372547 -121601593 - L2 LINE L2 -1 3312 3129 442 312 101 0 chrX 55372549 55372687 -121601453 + MER63 DNA MER1_type 5 782 -54 308 243 27 108 chrX 55372712 55372897 -121601243 - L2 LINE L2 -175 3138 2969 1544 218 2 48 chrX 55372926 55373320 -121600820 - L1ME3 LINE L1 0 6162 5787 214 325 79 18 chrX 55373977 55374091 -121600049 - MIR SINE MIR -117 145 25 391 301 98 18 chrX 55374583 55374746 -121599394 + MIR3 SINE MIR 11 186 -22 308 306 30 22 chrX 55375558 55375692 -121598448 - L1M4 LINE L1 -2939 3207 3073 1597 192 13 0 chrX 55375723 55376031 -121598109 - AluJb SINE Alu 0 312 1 390 322 178 15 chrX 55376070 55376272 -121597868 + MIR SINE MIR 28 262 0 649 228 154 0 chrX 55376414 55376563 -121597577 - MER5A DNA MER1_type -6 183 12 863 274 18 5 chrX 55376599 55376818 -121597322 - MIR SINE MIR -6 256 35 634 276 22 33 chrX 55377662 55377843 -121596297 - L2 LINE L2 0 3313 3135 1175 305 106 41 chrX 55378869 55379023 -121595117 - L3 LINE CR1 -45 1532 1389 2259 107 7 0 chrX 55379023 55379331 -121594809 - AluSx SINE Alu -2 310 1 1175 305 106 41 chrX 55379331 55379901 -121594239 - L3 LINE CR1 -188 1389 761 1519 213 155 5 chrX 55380331 55380764 -121593376 + MLT1D LTR MaLR 1 498 -7 181 336 102 7 chrX 55380814 55380951 -121593189 - L2 LINE L2 -175 3097 2948 285 193 0 10 chrX 55381185 55381258 -121592882 + MIR SINE MIR 108 179 -29 481 340 57 5 chrX 55381985 55382218 -121591922 + MIR SINE MIR 8 249 -13 211 292 163 35 chrX 55382744 55382946 -121591194 + L2 LINE L2 2818 3045 -268 381 254 110 0 chrX 55383391 55383509 -121590631 + MIR SINE MIR 76 206 -56 2122 119 0 3 chrX 55383648 55383958 -121590182 - AluSx SINE Alu -3 309 1 1362 236 51 17 chrX 55384096 55384612 -121589528 - L2 LINE L2 -261 3052 2520 1782 166 26 0 chrX 55384626 55384928 -121589212 + AluJb SINE Alu 3 312 0 484 299 51 20 chrX 55384952 55385149 -121588991 - MIR SINE MIR -58 204 2 315 348 42 0 chrX 55385832 55385950 -121588190 - MIR3 SINE MIR -53 155 33 562 252 224 5 chrX 55386939 55387149 -121586991 - MIR SINE MIR -5 257 2 243 167 0 67 chrX 55387537 55387597 -121586543 + MIR SINE MIR 196 251 -11 612 355 30 4 chrX 55388468 55388733 -121585407 + L3 LINE CR1 1259 1530 -47 229 263 25 25 chrX 55388965 55389045 -121585095 + (CAGAGA)n Simple_repeat Simple_repeat 5 84 0 541 294 149 7 chrX 55389296 55389578 -121584562 + L3 LINE CR1 1218 1539 -38 367 272 13 6 chrX 55389762 55389920 -121584220 + (TCTA)n Simple_repeat Simple_repeat 1 159 0 463 246 237 19 chrX 55390670 55390877 -121583263 + MIR SINE MIR 11 262 0 2489 61 0 3 chrX 55391462 55391774 -121582366 + AluY SINE Alu 1 311 0 2280 106 0 0 chrX 55391809 55392121 -121582019 + AluSx SINE Alu 1 312 0 212 281 229 0 chrX 55392131 55392227 -121581913 - MIR SINE MIR -15 247 130 220 185 0 19 chrX 55393473 55393527 -121580613 + MIR SINE MIR 91 143 -65 2189 158 58 24 chrX 55393990 55394440 -121579700 - LTR29 LTR ERV1 0 622 158 292 302 0 0 chrX 55394491 55394577 -121579563 - MER34 LTR ERV1 -456 86 1 216 288 17 0 chrX 55395185 55395244 -121578896 - MIR3 SINE MIR -48 160 101 246 105 0 0 chrX 55396534 55396572 -121577568 + (TCC)n Simple_repeat Simple_repeat 1 38 0 240 86 0 0 chrX 55396627 55396662 -121577478 + (CCCCAG)n Simple_repeat Simple_repeat 5 39 0 192 77 0 0 chrX 55397855 55397881 -121576259 + (TTC)n Simple_repeat Simple_repeat 2 27 0 336 94 0 0 chrX 55397961 55398014 -121576126 + (TC)n Simple_repeat Simple_repeat 2 54 0 180 152 0 0 chrX 55398087 55398120 -121576020 + C-rich Low_complexity Low_complexity 6 38 0 479 314 65 0 chrX 55398667 55398820 -121575320 + MIR SINE MIR 29 191 -71 1714 183 3 3 chrX 55398836 55399142 -121574998 + AluJo SINE Alu 1 306 -6 203 138 0 0 chrX 55399227 55399256 -121574884 + (TCC)n Simple_repeat Simple_repeat 1 29 0 228 289 60 0 chrX 55399256 55399339 -121574801 + L3b LINE CR1 1296 1383 -200 260 250 62 86 chrX 55399468 55399596 -121574544 + MIR SINE MIR 13 137 -125 189 397 24 16 chrX 55399895 55400021 -121574119 - L3b LINE CR1 -347 1236 1110 351 353 0 0 chrX 55400201 55400320 -121573820 + MIR SINE MIR 35 153 -55 184 169 193 84 chrX 55400898 55400981 -121573159 - L2 LINE L2 -24 3289 3198 184 381 28 50 chrX 55401196 55401377 -121572763 - L2 LINE L2 -164 3108 2932 239 303 57 49 chrX 55401445 55401567 -121572573 + MIR SINE MIR 26 148 -60 328 150 163 0 chrX 55402853 55402933 -121571207 + MIR SINE MIR 42 134 -74 196 321 37 37 chrX 55403026 55403107 -121571033 + L2 LINE L2 3147 3227 -45 1639 177 3 21 chrX 55403814 55404140 -121570000 + AluJo SINE Alu 1 321 0 268 401 30 8 chrX 55404641 55404773 -121569367 - MIR SINE MIR -108 154 20 619 246 73 17 chrX 55405084 55405263 -121568877 - MIR SINE MIR -6 256 68 2086 280 147 26 chrX 55405845 55407227 -121566913 - L2 LINE L2 0 3313 1710 1684 279 103 21 chrX 55407227 55407943 -121566197 - L2 LINE L2 -2347 967 193 369 222 74 0 chrX 55408048 55408129 -121566011 + MIR3 SINE MIR 68 154 -54 4803 153 23 17 chrX 55408141 55409116 -121565024 + L1MB7 LINE L1 5185 6165 -19 313 289 134 14 chrX 55409133 55409275 -121564865 + MER5A DNA MER1_type 31 189 0 275 267 96 22 chrX 55409995 55410130 -121564010 - MIR SINE MIR 0 262 118 516 227 82 0 chrX 55410142 55410252 -121563888 - L2 LINE L2 0 3313 3195 332 250 45 9 chrX 55410450 55410562 -121563578 + MER113 DNA MER1_type? 1 116 -405 392 288 72 0 chrX 55411217 55411328 -121562812 + MIR SINE MIR 69 187 -75 341 135 0 0 chrX 55411558 55411610 -121562530 + MER116 DNA Mariner 1 52 -28 346 321 25 51 chrX 55411663 55411937 -121562203 - L2 LINE L2 -191 3081 2815 575 258 95 37 chrX 55412097 55412287 -121561853 + L3b LINE CR1 1361 1561 -22 273 257 171 0 chrX 55412632 55412702 -121561438 + MIR SINE MIR 26 107 -155 592 230 20 46 chrX 55412755 55412907 -121561233 - MIR SINE MIR -112 150 3 319 234 120 62 chrX 55412907 55413022 -121561118 + MIR SINE MIR 84 209 -53 235 303 91 30 chrX 55413180 55413312 -121560828 + L2 LINE L2 3133 3272 0 241 188 16 31 chrX 55413853 55413917 -121560223 + MIR SINE MIR 81 143 -65 236 219 16 31 chrX 55414243 55414307 -121559833 + G-rich Low_complexity Low_complexity 1 63 0 677 303 87 24 chrX 55414448 55414680 -121559460 - MIR SINE MIR -18 244 3 210 237 169 0 chrX 55414855 55414914 -121559226 - L2 LINE L2 -60 3253 3185 265 313 81 20 chrX 55415069 55415168 -121558972 + MIR SINE MIR 15 119 -143 * 582 307 170 28 chrX 55415155 55415816 -121558324 + L2 LINE L2 2552 3313 0 290 337 11 0 chrX 55415852 55415947 -121558193 + MIR SINE MIR 161 256 -6 360 268 10 0 chrX 55416157 55416254 -121557886 - MER63 DNA MER1_type -86 750 27 482 288 117 0 chrX 55416642 55416805 -121557335 + MIR3 SINE MIR 2 183 -25 2313 110 7 0 chrX 55416889 55417198 -121556942 - AluSx SINE Alu -1 311 1 842 255 51 31 chrX 55417308 55417563 -121556577 - MIR SINE MIR 0 262 3 357 242 0 0 chrX 55417703 55417795 -121556345 + MIR SINE MIR 58 150 -58 447 276 168 5 chrX 55417820 55418023 -121556117 - MIR SINE MIR -7 255 20 7384 136 45 17 chrX 55418023 55419335 -121554805 - L1MC3 LINE L1 0 7785 6437 214 302 0 0 chrX 55420401 55420454 -121553686 - L3 LINE CR1 -2 1575 1523 236 314 65 32 chrX 55420496 55420620 -121553520 - L2 LINE L2 -37 3235 3108 491 330 104 5 chrX 55420659 55420871 -121553269 - MIR SINE MIR -10 252 20 573 261 40 76 chrX 55421804 55422053 -121552087 - MIR SINE MIR -22 240 1 960 139 48 48 chrX 55422143 55422308 -121551832 - FRAM SINE Alu -12 164 1 399 316 44 0 chrX 55422540 55422654 -121551486 - L2 LINE L2 -6 3266 3148 2623 102 42 7 chrX 55422758 55422994 -121551146 - L1MA2 LINE L1 0 6304 6047 195 42 0 0 chrX 55422994 55423018 -121551122 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 2623 102 42 7 chrX 55423018 55423185 -121550955 - L1MA2 LINE L1 -257 6047 5887 691 282 41 0 chrX 55423185 55423355 -121550785 - MIR SINE MIR -57 205 29 181 324 0 15 chrX 55423378 55423446 -121550694 + L3b LINE CR1 1317 1383 -200 627 237 141 30 chrX 55425671 55425869 -121548271 - MIR SINE MIR -14 248 29 218 302 0 0 chrX 55426091 55426154 -121547986 + L2 LINE L2 3137 3199 -73 261 354 18 0 chrX 55426219 55426332 -121547808 + L2 LINE L2 2637 2751 -563 502 211 61 20 chrX 55426337 55426484 -121547656 + L1MC4a LINE L1 5616 5768 -2040 6762 63 11 1 chrX 55426508 55427671 -121546469 - L1PA7 LINE L1 -548 5606 4430 4470 63 0 0 chrX 55427671 55428222 -121545918 + L1PA7 LINE L1 5599 6153 -1 305 282 92 0 chrX 55428222 55428353 -121545787 + L1MC4a LINE L1 5821 5963 -1845 12310 111 5 26 chrX 55428362 55430346 -121543794 + L1PA7 LINE L1 8 1984 -4477 17562 96 2 8 chrX 55430346 55430766 -121543374 + L1PA7 LINE L1 3164 3585 -2884 2063 135 0 35 chrX 55430766 55431084 -121543056 + AluSq SINE Alu 1 307 -6 17562 96 2 8 chrX 55431084 55433964 -121540176 + L1PA7 LINE L1 3585 6464 -5 1150 176 38 8 chrX 55434206 55434467 -121539673 + MER33 DNA MER1_type 2 270 -54 1896 156 0 11 chrX 55434476 55434759 -121539381 + AluJb SINE Alu 10 289 -23 2248 108 3 19 chrX 55434799 55435114 -121539026 + AluSq SINE Alu 1 310 -3 280 141 0 167 chrX 55435131 55435209 -121538931 + MER33 DNA MER1_type 259 323 -1 514 124 0 31 chrX 55435835 55435932 -121538208 + L1MB8 LINE L1 6085 6178 0 469 258 32 136 chrX 55435932 55436047 -121538093 + MIR SINE MIR 57 140 -122 2389 103 0 0 chrX 55436047 55436357 -121537783 + AluSx SINE Alu 1 310 -2 469 258 32 136 chrX 55436357 55436462 -121537678 + MIR SINE MIR 140 254 -8 306 328 57 8 chrX 55436473 55436595 -121537545 - MIR SINE MIR -26 236 109 472 240 110 26 chrX 55436948 55437102 -121537038 - MIR SINE MIR -4 258 92 525 322 184 9 chrX 55437388 55438030 -121536110 - L2 LINE L2 -338 2976 2223 440 249 106 74 chrX 55439328 55439517 -121534623 + MIR SINE MIR 64 258 -4 241 296 52 17 chrX 55439929 55440044 -121534096 + MIR SINE MIR 65 183 -79 319 266 0 55 chrX 55440754 55440863 -121533277 + MIR SINE MIR 59 161 -101 227 275 8 42 chrX 55441006 55441126 -121533014 + L1MC4 LINE L1 7926 8041 -1 1012 183 0 11 chrX 55441502 55441682 -121532458 - MER5B DNA MER1_type 0 178 1 185 357 93 0 chrX 55441947 55442087 -121532053 + L2 LINE L2 1921 2073 -1241 738 71 0 0 chrX 55442262 55442360 -121531780 - AluSg/x SINE Alu 0 312 215 232 26 26 26 chrX 55642782 55642820 -121331320 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2023 143 0 0 chrX 55642865 55643166 -121330974 + AluJb SINE Alu 1 301 -11 476 335 20 40 chrX 55643175 55643375 -121330765 + MIR SINE MIR 21 216 -46 302 254 8 111 chrX 55643931 55644057 -121330083 - MIR3 SINE MIR -6 202 90 608 262 257 9 chrX 55644841 55645051 -121329089 + MIR SINE MIR 1 262 0 259 233 0 0 chrX 55645061 55645121 -121329019 - MIR SINE MIR -26 236 177 293 294 9 46 chrX 55645386 55645495 -121328645 - MIR3 SINE MIR -48 160 56 212 233 14 55 chrX 55646295 55646368 -121327772 + MIR3 SINE MIR 115 184 -24 359 331 115 0 chrX 55646903 55647051 -121327089 - MIR SINE MIR -79 183 19 187 233 56 100 chrX 55647163 55647253 -121326887 - MIR SINE MIR -83 125 40 399 240 135 5 chrX 55647375 55647517 -121326623 - MIR SINE MIR -57 151 1 2383 78 0 0 chrX 55648002 55648298 -121325842 - AluSx SINE Alu -14 298 3 637 254 52 0 chrX 55648553 55648726 -121325414 + MIR SINE MIR 74 255 -7 605 224 63 23 chrX 55649289 55649463 -121324677 + MIR SINE MIR 79 259 -3 454 268 167 27 chrX 55649897 55650098 -121324042 + MIR SINE MIR 43 262 0 232 355 27 0 chrX 55650096 55650206 -121323934 - MIR SINE MIR -57 205 93 * 273 289 0 48 chrX 55650227 55650310 -121323830 + L3 LINE CR1 1495 1573 -4 219 245 0 19 chrX 55650833 55650886 -121323254 + MIR SINE MIR 59 110 -98 277 282 14 0 chrX 55650899 55650970 -121323170 - L2 LINE L2 0 3313 3242 373 252 68 0 chrX 55651245 55651348 -121322792 - MIR SINE MIR -61 147 38 263 196 36 0 chrX 55651693 55651749 -121322391 + MIR SINE MIR 93 150 -58 29 0 0 0 chrX 55653083 55653112 -121321028 + AT_rich Low_complexity Low_complexity 1 29 0 338 183 0 0 chrX 55653406 55653475 -121320665 - FRAM/FAM SINE Alu -90 85 25 299 274 24 61 chrX 55653550 55653714 -121320426 - MIR3 SINE MIR -2 206 49 289 314 15 69 chrX 55653844 55654048 -121320092 + L2 LINE L2 3078 3270 -2 216 270 16 0 chrX 55654737 55654800 -121319340 + CT-rich Low_complexity Low_complexity 5 68 0 252 258 90 0 chrX 55654921 55655010 -121319130 - MIR3 SINE MIR -3 205 109 306 0 0 0 chrX 55655993 55656027 -121318113 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 434 344 27 27 chrX 55656614 55656812 -121317328 - MIR3 SINE MIR -51 157 16 589 235 167 25 chrX 55656832 55657036 -121317104 - MIR SINE MIR -4 258 26 309 89 0 0 chrX 55657112 55657157 -121316983 + (CA)n Simple_repeat Simple_repeat 2 46 0 247 200 0 40 chrX 55657630 55657680 -121316460 - L2 LINE L2 -6 3266 3219 180 222 37 37 chrX 55657646 55657700 -121316440 - MIR SINE MIR -14 248 195 * 970 190 0 0 chrX 55658637 55658800 -121315340 + AluJo SINE Alu 60 222 -90 212 262 154 67 chrX 55660535 55660684 -121313456 + MIR3 SINE MIR 30 191 -17 995 204 69 23 chrX 55662921 55663225 -121310915 - L1MC5 LINE L1 -41 7920 7603 259 248 72 92 chrX 55664716 55664869 -121309271 + MIR3 SINE MIR 37 186 -22 735 356 105 13 chrX 55665264 55665711 -121308429 - L3 LINE CR1 -10 1567 1080 189 333 14 14 chrX 55666237 55666309 -121307831 - MIR SINE MIR -50 212 141 186 284 221 0 chrX 55666332 55666427 -121307713 - MIR3 SINE MIR -84 124 9 478 233 58 0 chrX 55666826 55666946 -121307194 + MIR SINE MIR 80 206 -56 494 325 139 21 chrX 55667213 55667407 -121306733 - MIR SINE MIR -42 220 4 218 178 14 68 chrX 55667635 55667708 -121306432 + G-rich Low_complexity Low_complexity 3 71 0 246 318 0 0 chrX 55668193 55668256 -121305884 + L2 LINE L2 3206 3268 -4 292 291 126 16 chrX 55668375 55668502 -121305638 + MIR SINE MIR 97 237 -25 972 213 9 35 chrX 55668621 55668851 -121305289 + MIR SINE MIR 23 246 -16 1699 152 30 30 chrX 55668983 55669279 -121304861 + AluJo SINE Alu 5 300 -12 187 269 45 15 chrX 55670243 55670310 -121303830 - L2 LINE L2 -212 3060 2992 191 332 240 18 chrX 55670333 55670716 -121303424 - L2 LINE L2 -497 2817 2350 383 331 32 8 chrX 55670850 55670974 -121303166 - MIR3 SINE MIR -73 135 9 852 155 6 46 chrX 55671705 55671879 -121302261 - MER20 DNA MER1_type -52 167 1 306 283 71 30 chrX 55672592 55672691 -121301449 - MER91A DNA MER1_type -1 195 93 573 267 61 24 chrX 55673471 55673636 -121300504 - MER5B DNA MER1_type 0 178 8 213 258 86 32 chrX 55675434 55675527 -121298613 - MIR SINE MIR -11 251 154 1729 153 0 48 chrX 55675527 55675840 -121298300 + AluJo SINE Alu 1 298 -14 454 289 39 8 chrX 55675877 55676005 -121298135 - MIR SINE MIR -97 165 34 352 206 97 34 chrX 55676096 55676223 -121297917 + MIR SINE MIR 4 139 -69 * 530 224 7 56 chrX 55676221 55676364 -121297776 + MER5B DNA MER1_type 43 178 0 546 157 9 35 chrX 55676409 55676524 -121297616 - MER5A DNA MER1_type -74 115 4 243 0 0 0 chrX 55677224 55677251 -121296889 + (CA)n Simple_repeat Simple_repeat 1 27 0 329 74 0 19 chrX 55677252 55677306 -121296834 + (GA)n Simple_repeat Simple_repeat 1 53 0 295 280 173 33 chrX 55678267 55678417 -121295723 + MIR SINE MIR 22 192 -70 230 311 132 0 chrX 55679118 55679224 -121294916 + L2 LINE L2 1585 1704 -1610 2075 292 161 18 chrX 55679329 55680728 -121293412 + L2 LINE L2 1716 3313 0 206 328 0 0 chrX 55681143 55681210 -121292930 + CT-rich Low_complexity Low_complexity 4 70 0 663 260 57 16 chrX 55682668 55682860 -121291280 + MIR3 SINE MIR 3 202 -6 259 216 20 98 chrX 55682888 55682990 -121291150 + MIR3 SINE MIR 64 157 -51 243 88 0 0 chrX 55684365 55684399 -121289741 + (CCCCAG)n Simple_repeat Simple_repeat 6 39 0 545 222 100 44 chrX 55684757 55684937 -121289203 + MIR3 SINE MIR 12 201 -7 568 347 46 44 chrX 55685580 55686089 -121288051 + L2 LINE L2 2644 3164 -108 332 301 52 52 chrX 55687257 55687393 -121286747 - MIR3 SINE MIR -24 184 49 336 261 36 36 chrX 55691503 55691614 -121282526 + L1MC4 LINE L1 6590 6700 -1342 285 247 0 0 chrX 55691617 55691698 -121282442 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 594 294 74 30 chrX 55693523 55693754 -121280386 + MIR SINE MIR 10 250 -12 7060 111 18 19 chrX 55694646 55696159 -121277981 + L1MA2 LINE L1 4799 6300 -4 366 229 14 0 chrX 55696442 55696512 -121277628 + MIR SINE MIR 23 93 -169 213 221 58 106 chrX 55696511 55696607 -121277533 - MIR SINE MIR -159 103 11 * 1058 185 5 5 chrX 55696607 55696796 -121277344 - MER5A DNA MER1_type 0 189 1 380 214 164 57 chrX 55696878 55697018 -121277122 + MIR SINE MIR 27 181 -81 819 243 11 97 chrX 55697360 55697574 -121276566 - MER102b DNA MER1_type -1087 341 153 1658 193 7 0 chrX 55697574 55697874 -121276266 - AluJb SINE Alu 0 312 11 819 243 11 97 chrX 55697874 55697927 -121276213 - MER102b DNA MER1_type -1275 153 97 1501 172 69 10 chrX 55697928 55698218 -121275922 + AluJo SINE Alu 1 307 -5 1647 140 89 81 chrX 55698513 55698885 -121275255 - THE1C LTR MaLR 0 375 1 1535 134 157 4 chrX 55699419 55699720 -121274420 + AluJo SINE Alu 1 341 0 216 278 44 11 chrX 55699738 55699828 -121274312 - MIR3 SINE MIR -106 102 10 909 251 148 10 chrX 55699829 55700140 -121274000 - L2 LINE L2 -2 3311 2958 1156 209 19 38 chrX 55700240 55700503 -121273637 + AluJo SINE Alu 1 258 -54 1936 119 14 0 chrX 55700504 55700819 -121273321 - AluSx SINE Alu 0 319 1 5259 191 36 11 chrX 55701066 55702246 -121271894 + L1 LINE L1 4124 5332 -814 45347 37 1 1 chrX 55702252 55708400 -121265740 + L1PA3 LINE L1 9 6154 -1 3076 120 12 2 chrX 55708391 55708873 -121265267 + L1PB3 LINE L1 5290 5776 -378 * 205 158 61 0 chrX 55708881 55708963 -121265177 + (TA)n Simple_repeat Simple_repeat 2 88 0 2485 116 5 3 chrX 55708976 55709347 -121264793 + L1PB3 LINE L1 5782 6153 -1 385 338 114 34 chrX 55709546 55710108 -121264032 + L2 LINE L2 1897 2503 -811 1166 290 109 38 chrX 55710122 55710616 -121263524 - L2 LINE L2 0 3313 2787 482 284 0 15 chrX 55710983 55711117 -121263023 + MIR3 SINE MIR 15 146 -62 664 252 55 71 chrX 55711478 55711617 -121262523 + MIR SINE MIR 9 144 -118 2698 106 5 16 chrX 55711617 55711996 -121262144 + THE1C LTR MaLR 1 375 0 664 252 55 71 chrX 55711996 55712110 -121262030 + MIR SINE MIR 144 258 -4 1302 168 70 56 chrX 55712244 55712530 -121261610 - AluJo SINE Alu -22 290 1 221 380 58 7 chrX 55712886 55713023 -121261117 - MIR SINE MIR -16 246 103 889 164 121 47 chrX 55713458 55713714 -121260426 + ORSL DNA AcHobo 1 275 0 387 243 53 53 chrX 55714460 55714612 -121259528 - MIR SINE MIR -59 203 52 263 231 39 26 chrX 55714815 55714893 -121259247 - MIR SINE MIR -1 261 183 2165 120 11 49 chrX 55714894 55715244 -121258896 + MER1B DNA MER1_type 1 337 0 575 285 106 10 chrX 55715246 55715340 -121258800 - MIR SINE MIR -8 254 170 2295 125 33 0 chrX 55715340 55715676 -121258464 + MER7A DNA MER2_type 2 346 0 575 285 106 10 chrX 55715676 55715788 -121258352 - MIR SINE MIR -92 170 28 275 299 167 11 chrX 55715854 55716028 -121258112 + L3b LINE CR1 1184 1384 -199 210 327 0 0 chrX 55716718 55716770 -121257370 + MIR SINE MIR 33 84 -124 858 229 21 5 chrX 55717770 55717958 -121256182 + MLT1A1 LTR MaLR 173 363 -2 2401 138 24 52 chrX 55718367 55718824 -121255316 - LTR47A LTR ERVL -8 444 1 1763 254 122 14 chrX 55719797 55720609 -121253531 + L2 LINE L2 2407 3309 -4 352 246 0 0 chrX 55721024 55721089 -121253051 - L2 LINE L2 -1 3312 3248 304 313 0 0 chrX 55721665 55721761 -121252379 + CT-rich Low_complexity Low_complexity 4 99 0 229 135 77 19 chrX 55721981 55722033 -121252107 - L2 LINE L2 -213 3059 3005 1694 167 3 3 chrX 55722034 55722327 -121251813 + AluJo SINE Alu 1 293 -19 575 210 0 0 chrX 55722597 55722716 -121251424 - MER103 DNA DNA -47 119 1 394 337 12 12 chrX 55722780 55722946 -121251194 - L2 LINE L2 -557 2757 2592 1659 156 0 76 chrX 55724335 55724663 -121249477 + AluJo SINE Alu 1 303 -9 360 0 0 0 chrX 55725344 55725384 -121248756 + (CA)n Simple_repeat Simple_repeat 2 41 0 218 244 115 13 chrX 55725860 55725938 -121248202 - L3b LINE CR1 -170 1413 1328 1091 189 31 22 chrX 55726177 55726405 -121247735 + MIR SINE MIR 12 241 -21 324 0 0 0 chrX 55726409 55726445 -121247695 + (TC)n Simple_repeat Simple_repeat 2 37 0 1525 176 6 26 chrX 55726467 55726780 -121247360 - AluJo SINE Alu -5 307 1 899 282 65 0 chrX 55726805 55727050 -121247090 - MIR SINE MIR 0 262 2 845 315 44 32 chrX 55727150 55727621 -121246519 + L2 LINE L2 2797 3270 -2 214 333 0 13 chrX 55727791 55727866 -121246274 + GA-rich Low_complexity Low_complexity 3 76 0 232 214 0 43 chrX 55728540 55728610 -121245530 + GA-rich Low_complexity Low_complexity 2 68 0 189 0 0 0 chrX 55728851 55728872 -121245268 + (GA)n Simple_repeat Simple_repeat 2 22 0 209 359 75 25 chrX 55729050 55729209 -121244931 - MIR3 SINE MIR -27 181 15 343 272 66 59 chrX 55729332 55729468 -121244672 - MIR SINE MIR -99 163 27 1272 209 16 11 chrX 55729523 55729799 -121244341 - MLT2B1 LTR ERVL 0 520 238 304 203 0 0 chrX 55729858 55729917 -121244223 - MLT1L LTR MaLR -382 233 175 5238 164 18 21 chrX 55730269 55730836 -121243304 - L1MB5 LINE L1 0 6174 5607 2207 100 0 0 chrX 55730836 55731135 -121243005 - AluSx SINE Alu -13 299 1 5238 164 18 21 chrX 55731135 55731605 -121242535 - L1MB5 LINE L1 -567 5607 5137 2185 103 0 0 chrX 55731605 55731896 -121242244 - AluSg SINE Alu -19 291 1 5238 164 18 21 chrX 55731896 55732006 -121242134 - L1MB5 LINE L1 -1037 5137 5028 1523 147 70 11 chrX 55732006 55732278 -121241862 - AluJb SINE Alu -14 298 11 5238 164 18 21 chrX 55732278 55732412 -121241728 - L1MB5 LINE L1 -1146 5028 4897 532 270 36 7 chrX 55732447 55732584 -121241556 + MIR SINE MIR 46 186 -76 220 216 59 0 chrX 55732970 55733021 -121241119 + CT-rich Low_complexity Low_complexity 5 58 0 270 258 79 22 chrX 55733178 55733267 -121240873 - MIR SINE MIR -94 114 21 916 142 16 77 chrX 55733370 55733553 -121240587 - MER5B DNA MER1_type -1 177 6 190 323 81 57 chrX 55733739 55733863 -121240277 - MIR SINE MIR -82 180 54 286 222 22 11 chrX 55734105 55734195 -121239945 + CT-rich Low_complexity Low_complexity 1 91 0 420 259 37 44 chrX 55734286 55734421 -121239719 + MIR3 SINE MIR 21 154 -54 23 0 0 0 chrX 55734443 55734466 -121239674 + AT_rich Low_complexity Low_complexity 1 23 0 201 39 0 0 chrX 55735168 55735194 -121238946 + (CA)n Simple_repeat Simple_repeat 1 26 0 243 189 0 0 chrX 55735217 55735270 -121238870 + GA-rich Low_complexity Low_complexity 1 53 0 213 284 136 12 chrX 55735335 55735416 -121238724 - MER5A DNA MER1_type -98 91 1 780 214 17 22 chrX 55735419 55735597 -121238543 + MER5B DNA MER1_type 1 177 -1 337 286 22 73 chrX 55736035 55736379 -121237761 + L2 LINE L2 2724 3112 -160 1151 155 58 18 chrX 55736385 55736611 -121237529 - MER96B DNA MER1_type? -182 235 1 194 200 0 80 chrX 55736634 55736684 -121237456 + L2 LINE L2 2986 3031 -282 1133 283 47 23 chrX 55736687 55737114 -121237026 + L1ME1 LINE L1 4819 5255 -891 1564 128 0 4 chrX 55739469 55739696 -121234444 - AluSq SINE Alu -87 226 1 774 221 201 38 chrX 55739768 55740212 -121233928 + L1ME1 LINE L1 5651 6166 0 1581 169 3 23 chrX 55740217 55740518 -121233622 + AluJo SINE Alu 1 295 -17 193 267 22 0 chrX 55740521 55740566 -121233574 + L2 LINE L2 3029 3074 -239 245 30 0 0 chrX 55740572 55740605 -121233535 + L1MA8 LINE L1 6230 6262 -29 1739 174 0 0 chrX 55740628 55740910 -121233230 - AluJb SINE Alu -30 282 1 222 86 25 74 chrX 55740921 55741002 -121233138 + (TAAA)n Simple_repeat Simple_repeat 4 80 0 670 182 0 25 chrX 55741074 55741195 -121232945 - FLAM_A SINE Alu -12 121 4 321 263 21 11 chrX 55741200 55741295 -121232845 + L2 LINE L2 3132 3227 -86 454 333 0 0 chrX 55741387 55741534 -121232606 + MIR SINE MIR 20 166 -96 1758 176 42 0 chrX 55741899 55742188 -121231952 + AluJb SINE Alu 1 301 -11 662 114 0 0 chrX 55742201 55742289 -121231851 + L1PA6 LINE L1 11 98 -6048 * 34194 84 8 6 chrX 55742287 55743997 -121230143 + L1PA6 LINE L1 623 2330 -3824 207 0 0 0 chrX 55743997 55744020 -121230120 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 34194 84 8 6 chrX 55744020 55747839 -121226301 + L1PA6 LINE L1 2330 6154 0 3223 128 38 11 chrX 55747839 55748372 -121225768 - LTR49 LTR ERV1 -48 547 1 227 284 0 40 chrX 55748401 55748475 -121225665 + MIR SINE MIR 56 126 -136 210 118 0 0 chrX 55748479 55748513 -121225627 + (TCCCC)n Simple_repeat Simple_repeat 5 38 0 1750 172 3 11 chrX 55748516 55748832 -121225308 - AluJb SINE Alu 0 314 1 1773 33 0 0 chrX 55748918 55749131 -121225009 - L1P LINE L1 -926 5220 5008 1876 34 17 0 chrX 55749135 55749371 -121224769 + L1P2 LINE L1 5254 5493 -661 1558 78 0 0 chrX 55749810 55750002 -121224138 + AluSg/x SINE Alu 121 312 0 1050 168 6 0 chrX 55750022 55750201 -121223939 - L1MC2 LINE L1 -471 5873 5694 5768 37 3 0 chrX 55752437 55753114 -121221026 + L1PA5 LINE L1 5476 6154 0 208 288 72 24 chrX 55753288 55753413 -121220727 - MIR SINE MIR -15 247 117 21 0 0 0 chrX 55753918 55753939 -121220201 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chrX 55754246 55754281 -121219859 + (TA)n Simple_repeat Simple_repeat 2 36 0 423 52 0 0 chrX 55754281 55754339 -121219801 + (GA)n Simple_repeat Simple_repeat 1 58 0 244 257 18 24 chrX 55754358 55754471 -121219669 - MIR SINE MIR -51 211 101 490 269 0 35 chrX 55754488 55754633 -121219507 + MIR3 SINE MIR 24 163 -45 296 295 13 0 chrX 55754639 55754717 -121219423 + MER117 DNA MER1_type 34 112 -85 2637 176 32 41 chrX 55754725 55755259 -121218881 - LTR26B LTR ERV1 -2 529 1 210 257 0 71 chrX 55755531 55755601 -121218539 + MIR SINE MIR 81 145 -63 668 300 82 0 chrX 55755811 55756044 -121218096 + MIR SINE MIR 11 262 0 2466 177 60 5 chrX 55756056 55756492 -121217648 + LTR32 LTR ERVL 12 471 0 211 226 0 36 chrX 55756831 55756915 -121217225 + CT-rich Low_complexity Low_complexity 3 83 0 2767 115 38 9 chrX 55757021 55757446 -121216694 + LTR49 LTR ERV1 1 437 -158 2248 8 0 0 chrX 55757446 55757692 -121216448 - L1PA3 LINE L1 -282 5873 5628 885 92 23 0 chrX 55757666 55757797 -121216343 + L1PA3 LINE L1 6021 6154 -1 * 656 143 41 54 chrX 55757797 55757944 -121216196 + LTR49 LTR ERV1 417 561 -34 3376 170 57 28 chrX 55757961 55758633 -121215507 + LTR8 LTR ERV1 1 691 0 269 300 20 0 chrX 55758796 55758896 -121215244 + L3 LINE CR1 1416 1517 -60 237 159 0 0 chrX 55759417 55759461 -121214679 + GA-rich Low_complexity Low_complexity 1 44 0 499 327 82 48 chrX 55759581 55760021 -121214119 - L2 LINE L2 0 3313 2859 391 286 116 0 chrX 55760294 55760441 -121213699 - L2 LINE L2 -15 3257 3094 680 274 35 84 chrX 55761068 55761474 -121212666 + MLT1I LTR MaLR 20 401 -8 625 222 41 18 chrX 55761481 55761652 -121212488 + MIR SINE MIR 88 262 0 200 297 14 14 chrX 55762613 55762687 -121211453 + MER5A DNA MER1_type 6 79 -110 497 251 29 46 chrX 55763096 55763271 -121210869 - MIR SINE MIR -51 211 40 2424 107 8 8 chrX 55763593 55763948 -121210192 + THE1A LTR MaLR 1 355 0 8017 87 258 2 chrX 55763948 55765206 -121208934 + THE1A-int LTR MaLR 1 1580 0 2197 121 35 9 chrX 55765206 55765552 -121208588 + THE1A LTR MaLR 1 355 0 357 235 11 6 chrX 55765853 55765954 -121208186 + MIR SINE MIR 25 123 -85 345 338 0 37 chrX 55766669 55766805 -121207335 + L2 LINE L2 2913 3043 -229 182 214 0 71 chrX 55766918 55766974 -121207166 + L2 LINE L2 3185 3236 -77 890 267 9 54 chrX 55767536 55767869 -121206271 - L2 LINE L2 -2 3311 2994 219 256 26 14 chrX 55768350 55768450 -121205690 + MIR SINE MIR 86 146 -62 318 67 0 0 chrX 55768817 55768862 -121205278 + (TG)n Simple_repeat Simple_repeat 2 46 0 2632 40 0 0 chrX 55768897 55769197 -121204943 + AluY SINE Alu 1 300 -11 1751 185 3 3 chrX 55769331 55769633 -121204507 + AluJo SINE Alu 1 302 -10 193 282 220 26 chrX 55769724 55770029 -121204111 - L2 LINE L2 -407 2907 2544 188 265 177 61 chrX 55770112 55770293 -121203847 - L3 LINE CR1 -685 892 691 631 233 111 6 chrX 55770308 55770488 -121203652 + MIR SINE MIR 64 262 0 805 122 0 0 chrX 55770815 55770922 -121203218 + FRAM SINE Alu 47 153 -23 421 280 15 0 chrX 55770923 55771055 -121203085 - L1M4 LINE L1 -3589 2557 2424 * 1570 251 64 2 chrX 55771053 55771523 -121202617 + L1MB5 LINE L1 3448 3946 -2200 * 3942 195 58 9 chrX 55771518 55772897 -121201243 + L1MB5 LINE L1 4731 6174 0 389 242 11 62 chrX 55773090 55773270 -121200870 + HAL1b LINE L1 766 2325 -182 395 216 128 59 chrX 55773350 55773554 -121200586 + HAL1 LINE L1 2287 2504 -3 331 262 48 35 chrX 55773716 55773861 -121200279 - L2 LINE L2 -167 3146 3000 180 254 35 97 chrX 55773940 55774054 -121200086 - L3 LINE CR1 -8 1569 1463 390 256 186 6 chrX 55774114 55774270 -121199870 - MIR SINE MIR -6 256 73 387 0 0 0 chrX 55774605 55774648 -121199492 + (TG)n Simple_repeat Simple_repeat 1 43 0 579 85 0 0 chrX 55775157 55775239 -121198901 + (TC)n Simple_repeat Simple_repeat 1 82 0 263 297 14 113 chrX 55775292 55775514 -121198626 - MIR SINE MIR -56 206 7 497 301 24 0 chrX 55775639 55775805 -121198335 + MIR SINE MIR 73 242 -20 621 221 20 13 chrX 55775913 55776062 -121198078 + MLT1F LTR MaLR 48 197 -308 1766 163 7 14 chrX 55776106 55776400 -121197740 - AluJo SINE Alu -20 292 1 1478 122 39 0 chrX 55776401 55776631 -121197509 + ERVL-D LTR ERVL 5519 5757 -7 1346 196 36 91 chrX 55776631 55777069 -121197071 + MLT2D LTR ERVL 1 414 0 6396 175 52 44 chrX 55777069 55779340 -121194800 + L1MB7 LINE L1 3611 5930 -254 921 111 0 0 chrX 55779340 55779512 -121194628 + (TA)n Simple_repeat Simple_repeat 1 172 0 6396 175 52 44 chrX 55779512 55779718 -121194422 + L1MB7 LINE L1 5930 6133 -51 905 170 0 27 chrX 55779723 55779870 -121194270 + AluJ SINE Alu 3 145 -167 15986 184 6 10 chrX 55779895 55780047 -121194093 + L1PB1 LINE L1 1615 1766 -4385 2188 125 10 0 chrX 55780047 55780352 -121193788 + AluSg SINE Alu 1 308 -2 15986 184 6 10 chrX 55780352 55784775 -121189365 + L1PB1 LINE L1 1766 6151 0 1193 147 15 5 chrX 55784775 55784976 -121189164 + L1PA16 LINE L1 5959 6164 -2 503 188 20 0 chrX 55784980 55785081 -121189059 + L1M4 LINE L1 4762 4864 -1282 994 199 157 7 chrX 55785119 55785387 -121188753 + MLT1F LTR MaLR 195 492 -50 207 0 0 0 chrX 55785390 55785413 -121188727 + (A)n Simple_repeat Simple_repeat 1 23 0 917 202 12 6 chrX 55785413 55785581 -121188559 + AluJ SINE Alu 120 288 -24 266 174 0 0 chrX 55785583 55785629 -121188511 + L1MB7 LINE L1 6131 6176 -8 2417 93 0 6 chrX 55785642 55785953 -121188187 + AluSx SINE Alu 1 309 -3 2025 112 14 0 chrX 55786010 55786361 -121187779 + AluSx SINE Alu 1 355 0 198 114 29 0 chrX 55786571 55786606 -121187534 - MIR SINE MIR -69 193 158 271 314 29 22 chrX 55788181 55788318 -121185822 + MIR SINE MIR 1 138 -70 222 326 42 84 chrX 55788431 55788670 -121185470 - L2 LINE L2 -16 3256 3028 462 222 35 62 chrX 55791024 55791168 -121182972 + MIR SINE MIR 117 256 -6 342 234 13 0 chrX 55791468 55791545 -121182595 + MIR SINE MIR 46 123 -139 575 289 46 0 chrX 55791886 55792059 -121182081 - MIR SINE MIR -12 250 70 201 178 0 0 chrX 55792356 55792401 -121181739 + (TG)n Simple_repeat Simple_repeat 2 46 0 508 301 137 14 chrX 55793137 55793356 -121180784 + MIR SINE MIR 2 247 -15 307 331 6 6 chrX 55798270 55798436 -121175704 + CT-rich Low_complexity Low_complexity 2 167 0 330 26 0 0 chrX 55798822 55798861 -121175279 + (TG)n Simple_repeat Simple_repeat 2 40 0 404 276 20 41 chrX 55799856 55800001 -121174139 - MIR SINE MIR -56 206 63 559 287 173 0 chrX 55803334 55803551 -121170589 - MIR SINE MIR -10 252 3 486 146 0 0 chrX 55804137 55804219 -121169921 + (TG)n Simple_repeat Simple_repeat 1 82 0 501 255 41 41 chrX 55805216 55805361 -121168779 - MIR3 SINE MIR -34 174 30 252 0 0 0 chrX 55807377 55807405 -121166735 + (CA)n Simple_repeat Simple_repeat 1 28 0 185 108 27 0 chrX 55808230 55808267 -121165873 + (TG)n Simple_repeat Simple_repeat 1 38 0 420 294 21 43 chrX 55809776 55809963 -121164177 - MIR SINE MIR -34 228 46 249 268 31 10 chrX 55811021 55811118 -121163022 + MIR SINE MIR 20 118 -90 573 268 8 0 chrX 55811142 55811269 -121162871 - L2 LINE L2 0 3313 3186 440 272 68 14 chrX 55812070 55812217 -121161923 - MIR3 SINE MIR -24 184 30 189 0 0 0 chrX 55812272 55812293 -121161847 + (TG)n Simple_repeat Simple_repeat 1 21 0 557 302 21 16 chrX 55812881 55813073 -121161067 - MIR3 SINE MIR -13 195 3 727 319 107 37 chrX 55813708 55814409 -121159731 + L2 LINE L2 2508 3265 -7 704 298 7 75 chrX 55814533 55814812 -121159328 - MIR SINE MIR 0 262 3 944 302 4 8 chrX 55814906 55815164 -121158976 + MIR SINE MIR 4 260 -2 245 339 96 26 chrX 55815433 55815548 -121158592 + MIR SINE MIR 21 143 -65 396 217 16 70 chrX 55815938 55816067 -121158073 + L1ME LINE L1 5513 5634 -487 893 154 0 0 chrX 55816190 55816320 -121157820 - FLAM_A SINE Alu -3 130 1 495 107 0 0 chrX 55816347 55816422 -121157718 + (CA)n Simple_repeat Simple_repeat 2 76 0 576 272 6 0 chrX 55816555 55816713 -121157427 + MIR SINE MIR 103 261 -1 390 326 22 7 chrX 55816740 55816878 -121157262 + L2 LINE L2 3133 3272 0 231 213 21 0 chrX 55816934 55816981 -121157159 - MIR SINE MIR -139 69 22 444 276 41 27 chrX 55818028 55818238 -121155902 - MIR SINE MIR -46 216 3 274 322 0 0 chrX 55818402 55818489 -121155651 - MIR SINE MIR -89 119 33 612 167 28 0 chrX 55819550 55819658 -121154482 + MIR SINE MIR 98 208 -54 844 304 4 20 chrX 55819696 55819949 -121154191 - MIR SINE MIR -8 254 6 508 311 43 6 chrX 55821481 55821645 -121152495 + MIR SINE MIR 2 171 -91 2215 109 0 0 chrX 55821679 55821981 -121152159 - AluSx SINE Alu -10 302 1 543 274 127 25 chrX 55822493 55822730 -121151410 - MIR SINE MIR 0 262 2 405 293 80 106 chrX 55823040 55823687 -121150453 - L2 LINE L2 -1 3271 2619 1554 147 91 50 chrX 55823779 55824098 -121150042 - MLT1A1 LTR MaLR -30 335 4 663 259 59 62 chrX 55824105 55824358 -121149782 - L2 LINE L2 -27 3286 3033 2202 152 30 25 chrX 55824358 55824720 -121149420 - THE1B LTR MaLR 0 364 1 663 259 59 62 chrX 55824720 55824771 -121149369 - L2 LINE L2 -280 3033 2983 217 260 150 30 chrX 55824804 55824904 -121149236 + MIR SINE MIR 27 138 -70 387 286 8 17 chrX 55825263 55825382 -121148758 - MIR SINE MIR -57 151 34 711 279 53 5 chrX 55825518 55825726 -121148414 - MIR SINE MIR -40 222 5 910 196 27 16 chrX 55826035 55826219 -121147921 + MER5A DNA MER1_type 1 186 -3 369 305 26 7 chrX 55827452 55827606 -121146534 - MIR3 SINE MIR -48 160 4 768 176 0 44 chrX 55827752 55827888 -121146252 + AluJo SINE Alu 7 136 -176 273 275 244 0 chrX 55828118 55828249 -121145891 - MIR SINE MIR 0 262 100 276 305 31 47 chrX 55828306 55828434 -121145706 - MIR SINE MIR -66 196 71 21 0 0 0 chrX 55828959 55828980 -121145160 + AT_rich Low_complexity Low_complexity 1 21 0 279 182 0 26 chrX 55829975 55830052 -121144088 + L1ME4a LINE L1 6043 6117 -4 264 329 25 56 chrX 55830518 55830679 -121143461 + MIR SINE MIR 49 204 -58 * 770 304 34 8 chrX 55830645 55830882 -121143258 - MIR SINE MIR -13 249 7 201 283 0 0 chrX 55831155 55831208 -121142932 + C-rich Low_complexity Low_complexity 1 53 0 288 0 0 0 chrX 55832139 55832171 -121141969 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 125 0 0 chrX 55832171 55832203 -121141937 + (GA)n Simple_repeat Simple_repeat 2 33 0 229 314 105 39 chrX 55832849 55833002 -121141138 + MIR3 SINE MIR 30 192 -16 214 366 24 0 chrX 55833058 55833181 -121140959 + MIR SINE MIR 65 190 -72 282 288 62 34 chrX 55833770 55833947 -121140193 + L2 LINE L2 1628 1809 -1505 1724 259 59 23 chrX 55834497 55835060 -121139080 - L2 LINE L2 -506 2808 2226 936 284 78 19 chrX 55835063 55835436 -121138704 + L2 LINE L2 2919 3313 0 697 283 25 10 chrX 55835435 55835633 -121138507 - MIR SINE MIR -49 213 13 * 481 252 57 43 chrX 55835659 55835869 -121138271 + MIR SINE MIR 41 253 -9 273 162 29 162 chrX 55835870 55835975 -121138165 + MIR3 SINE MIR 115 205 -3 1014 247 13 4 chrX 55837231 55837466 -121136674 - MIR SINE MIR 0 262 26 270 0 0 0 chrX 55838105 55838135 -121136005 + (TG)n Simple_repeat Simple_repeat 1 30 0 279 347 64 32 chrX 55838153 55838467 -121135673 - L2 LINE L2 -480 2834 2511 397 239 89 17 chrX 55838611 55838791 -121135349 - L1ME4a LINE L1 -3 6118 5926 338 297 144 0 chrX 55838846 55838964 -121135176 - L1ME4a LINE L1 -1988 5820 5686 348 270 0 20 chrX 55839026 55839126 -121135014 + MIR3 SINE MIR 64 161 -47 224 271 23 23 chrX 55839186 55839315 -121134825 + CT-rich Low_complexity Low_complexity 5 133 0 186 43 0 0 chrX 55839865 55839888 -121134252 + (CA)n Simple_repeat Simple_repeat 2 24 0 189 239 14 56 chrX 55839965 55840036 -121134104 - L3 LINE CR1 -1222 355 288 1217 265 46 48 chrX 55840978 55841739 -121132401 - L2 LINE L2 -3 3310 2553 403 188 154 17 chrX 55842563 55842680 -121131460 + L2 LINE L2 3137 3269 -3 721 194 47 24 chrX 55843231 55843401 -121130739 + MIR SINE MIR 49 222 -40 197 286 18 0 chrX 55843566 55843622 -121130518 - MIR SINE MIR -50 212 156 474 240 183 34 chrX 55844715 55844890 -121129250 - MIR SINE MIR -33 229 29 499 268 66 13 chrX 55845749 55845940 -121128200 - MIR SINE MIR -56 206 11 213 274 12 48 chrX 55846521 55846605 -121127535 + MIR SINE MIR 35 115 -147 691 293 54 0 chrX 55848957 55849162 -121124978 - MIR SINE MIR -1 261 46 21 0 0 0 chrX 55849603 55849624 -121124516 + AT_rich Low_complexity Low_complexity 1 21 0 451 221 207 7 chrX 55850008 55850153 -121123987 + MER5A DNA MER1_type 4 177 -12 547 135 11 0 chrX 55850165 55850254 -121123886 + MER5A DNA MER1_type 1 90 -99 252 287 165 17 chrX 55850490 55850605 -121123535 - MIR SINE MIR -12 250 119 741 218 140 5 chrX 55850713 55850906 -121123234 - MIR SINE MIR -20 242 24 393 250 25 25 chrX 55851627 55851747 -121122393 - MIR SINE MIR -62 200 81 800 335 83 37 chrX 55853150 55854210 -121119930 + L2 LINE L2 1462 2570 -744 204 40 0 0 chrX 55854217 55854242 -121119898 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 2500 281 78 13 chrX 55854242 55855515 -121118625 - L2 LINE L2 -17 3296 1935 1117 222 0 17 chrX 55855532 55855766 -121118374 - MIR SINE MIR -20 242 13 637 314 17 21 chrX 55855798 55856034 -121118106 - L2 LINE L2 -1379 1935 1701 235 172 0 31 chrX 55856034 55856098 -121118042 + CT-rich Low_complexity Low_complexity 1 62 0 380 293 75 49 chrX 55856152 55856418 -121117722 - L2 LINE L2 -1684 1630 1358 333 234 108 54 chrX 55856438 55856565 -121117575 + L2 LINE L2 2586 2726 -588 2435 71 3 0 chrX 55856565 55856873 -121117267 + AluY SINE Alu 1 309 -2 333 234 108 54 chrX 55856873 55856912 -121117228 + L2 LINE L2 2726 2761 -553 309 267 67 19 chrX 55857051 55857156 -121116984 + L2 LINE L2 3153 3262 -10 633 264 126 26 chrX 55857428 55857659 -121116481 - MIR SINE MIR 0 262 9 959 190 11 17 chrX 55857676 55857855 -121116285 - MER5B DNA MER1_type 0 178 1 273 336 28 0 chrX 55859186 55859293 -121114847 - MIR3 SINE MIR -84 124 15 505 337 11 11 chrX 55859612 55859802 -121114338 - MIR SINE MIR -61 201 12 212 268 0 28 chrX 55860910 55860981 -121113159 + CT-rich Low_complexity Low_complexity 2 70 0 277 294 0 0 chrX 55861006 55861074 -121113066 + C-rich Low_complexity Low_complexity 1 68 0 245 128 21 0 chrX 55861233 55861280 -121112860 + (CGGG)n Simple_repeat Simple_repeat 3 50 0 243 360 10 20 chrX 55861422 55861522 -121112618 - MIR3 SINE MIR -107 101 3 647 265 48 83 chrX 55862007 55862358 -121111782 - L2 LINE L2 0 3272 2934 2482 55 3 3 chrX 55862368 55862677 -121111463 + AluY SINE Alu 1 309 -2 720 285 26 10 chrX 55863244 55863437 -121110703 + MER91A DNA MER1_type 1 196 0 378 219 80 139 chrX 55863981 55864182 -121109958 - MIR SINE MIR -24 238 50 182 167 409 15 chrX 55864295 55864361 -121109779 - MIR SINE MIR -109 153 62 273 366 8 8 chrX 55865345 55865468 -121108672 + MIR SINE MIR 23 145 -63 491 204 9 9 chrX 55865767 55865875 -121108265 - L2 LINE L2 0 3313 3206 991 176 0 16 chrX 55865878 55866071 -121108069 - AluJb SINE Alu -1 311 122 1885 156 3 3 chrX 55866086 55866394 -121107746 - AluJb SINE Alu -4 308 1 831 186 0 0 chrX 55866404 55866544 -121107596 - FLAM_C SINE Alu -2 141 2 223 349 12 12 chrX 55866989 55867072 -121107068 + MIR SINE MIR 16 98 -110 290 350 6 49 chrX 55867365 55867528 -121106612 + MIR SINE MIR 59 214 -48 234 0 0 0 chrX 55868065 55868091 -121106049 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 288 0 0 0 chrX 55868090 55868122 -121106018 + (GA)n Simple_repeat Simple_repeat 1 32 0 202 191 32 63 chrX 55869630 55869693 -121104447 - MIR3 SINE MIR -40 168 108 1309 79 6 16 chrX 55869907 55870228 -121103912 + (TTTC)n Simple_repeat Simple_repeat 1 498 0 393 220 68 8 chrX 55870246 55870364 -121103776 - L1ME4a LINE L1 -11 6110 5986 2245 85 0 3 chrX 55870472 55870767 -121103373 + AluSg SINE Alu 5 298 -12 2565 105 8 11 chrX 55870773 55871144 -121102996 - L1MB1 LINE L1 -17 6151 5782 269 261 96 26 chrX 55871146 55871261 -121102879 + MIR3 SINE MIR 83 205 -3 397 80 8 240 chrX 55871283 55871408 -121102732 + MLT1A2 LTR MaLR 1 96 -278 455 101 13 0 chrX 55871408 55871487 -121102653 + (TA)n Simple_repeat Simple_repeat 2 81 0 2418 142 13 34 chrX 55871487 55872003 -121102137 - L1M3 LINE L1 -532 5780 5255 377 301 17 87 chrX 55872193 55872366 -121101774 + MIR SINE MIR 47 207 -55 231 257 95 29 chrX 55872431 55872536 -121101604 + MIR3 SINE MIR 94 205 -3 1478 151 101 40 chrX 55872558 55872922 -121101218 + MLT1A1 LTR MaLR 1 363 -2 334 286 11 0 chrX 55873331 55873422 -121100718 - MIR SINE MIR -118 144 53 227 362 29 9 chrX 55873556 55873661 -121100479 - MIR3 SINE MIR -9 199 93 214 224 0 35 chrX 55873803 55873861 -121100279 - MIR3 SINE MIR -3 205 150 427 313 62 7 chrX 55874707 55874851 -121099289 - MIR SINE MIR -17 245 94 230 258 34 67 chrX 55875437 55875526 -121098614 + L3b LINE CR1 1298 1383 -200 240 366 53 0 chrX 55876195 55876326 -121097814 - L3b LINE CR1 -131 1452 1315 283 152 0 0 chrX 55876904 55876950 -121097190 + L3 LINE CR1 1530 1575 -2 809 311 39 11 chrX 55877575 55877861 -121096279 + MER102b DNA MER1_type 6 299 -42 404 204 10 48 chrX 55877863 55877966 -121096174 - MIR SINE MIR -72 136 38 215 143 24 24 chrX 55878305 55878347 -121095793 + (CCGGG)n Simple_repeat Simple_repeat 1 42 0 204 353 0 0 chrX 55878452 55878520 -121095620 + C-rich Low_complexity Low_complexity 102 169 0 384 22 0 0 chrX 55879092 55879137 -121095003 + (CA)n Simple_repeat Simple_repeat 2 46 0 294 98 0 0 chrX 55879140 55879191 -121094949 + (CAG)n Simple_repeat Simple_repeat 3 53 0 659 202 0 0 chrX 55879969 55880083 -121094057 - MER81 DNA DNA 0 114 1 333 200 0 131 chrX 55880138 55880268 -121093872 - MIR SINE MIR -74 188 76 475 279 36 18 chrX 55881075 55881240 -121092900 + MIR3 SINE MIR 38 205 -3 738 156 67 94 chrX 55881259 55881439 -121092701 - FRAM SINE Alu -9 167 1 341 313 91 23 chrX 55881573 55881749 -121092391 - MIR SINE MIR -16 246 59 758 132 162 0 chrX 55881752 55881888 -121092252 - BC200 scRNA scRNA -41 159 2 193 218 0 36 chrX 55881896 55881951 -121092189 - MIR SINE MIR -209 53 1 232 358 32 0 chrX 55881993 55882088 -121092052 - MIR SINE MIR -56 206 109 398 310 54 0 chrX 55882319 55882448 -121091692 - MIR SINE MIR -14 248 113 180 111 0 0 chrX 55882629 55882656 -121091484 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 805 221 19 48 chrX 55882750 55882958 -121091182 - MIR SINE MIR -15 247 46 426 332 31 31 chrX 55882974 55883266 -121090874 - L2 LINE L2 -503 2811 2520 272 306 8 58 chrX 55883269 55883390 -121090750 + MER91A DNA MER1_type 82 196 0 533 298 52 21 chrX 55884121 55884312 -121089828 + MIR3 SINE MIR 11 207 -1 373 222 11 0 chrX 55884598 55884688 -121089452 + MIR SINE MIR 58 148 -114 1387 236 85 20 chrX 55884688 55885133 -121089007 - MLT1L LTR MaLR -15 600 127 484 236 49 16 chrX 55885157 55885280 -121088860 + MER5B DNA MER1_type 48 174 -4 256 272 120 56 chrX 55885280 55885405 -121088735 - MLT1L LTR MaLR -456 159 27 203 379 17 17 chrX 55885547 55885663 -121088477 + MER5B DNA MER1_type 1 116 -62 234 217 0 0 chrX 55886538 55886584 -121087556 - L2 LINE L2 -6 3307 3262 385 227 91 58 chrX 55886895 55887049 -121087091 + MIR3 SINE MIR 1 159 -49 898 268 112 29 chrX 55887054 55887566 -121086574 - L3 LINE CR1 -3 1574 967 243 291 64 0 chrX 55887582 55887692 -121086448 + L2 LINE L2 3187 3303 -10 212 264 0 77 chrX 55888592 55888683 -121085457 + MIR3 SINE MIR 8 91 -117 184 272 123 25 chrX 55889117 55889198 -121084942 - MIR SINE MIR -125 137 49 400 218 0 0 chrX 55889794 55889872 -121084268 - Alu SINE Alu -1 310 233 1252 153 0 79 chrX 56089885 56090113 -120884027 - AluJo SINE Alu -102 210 1 904 95 0 7 chrX 56090113 56090250 -120883890 - Tigger1 DNA MER2_type -581 1837 1702 1038 143 77 0 chrX 56090271 56090439 -120883701 + AluJb SINE Alu 129 309 -3 285 149 0 0 chrX 56090443 56090490 -120883650 - Tigger1 DNA MER2_type -1943 475 429 369 0 0 0 chrX 56090566 56090607 -120883533 + (TC)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chrX 56090606 56090630 -120883510 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 652 150 144 6 chrX 56090678 56090838 -120883302 - L1MD2 LINE L1 -14 6345 6164 862 189 0 0 chrX 56090852 56090995 -120883145 - FLAM_C SINE Alu 0 143 1 2349 105 0 0 chrX 56091162 56091458 -120882682 - AluSx SINE Alu -16 296 1 1149 224 66 21 chrX 56091513 56091736 -120882404 - L1MC5 LINE L1 -530 7431 7183 2369 97 0 0 chrX 56091736 56092034 -120882106 - AluSx SINE Alu -14 298 1 1149 224 66 21 chrX 56092034 56092189 -120881951 - L1MC5 LINE L1 -778 7183 7036 1311 144 75 47 chrX 56092193 56092513 -120881627 - L1MA7 LINE L1 0 6291 5963 1522 171 44 0 chrX 56092614 56092740 -120881400 - L1P LINE L1 -1612 4534 4415 324 0 0 0 chrX 56092740 56092776 -120881364 + (TG)n Simple_repeat Simple_repeat 1 36 0 1522 171 44 0 chrX 56092776 56092965 -120881175 - L1P LINE L1 -1731 4415 4205 922 82 0 15 chrX 56092988 56093123 -120881017 + FLAM_C SINE Alu 1 133 0 371 307 40 45 chrX 56093197 56093399 -120880741 + L1ME3A LINE L1 5963 6163 -7 421 277 38 1 chrX 56093432 56093591 -120880549 - L1ME1 LINE L1 -154 6012 5856 198 0 0 0 chrX 56093820 56093842 -120880298 + (A)n Simple_repeat Simple_repeat 1 22 0 308 332 19 51 chrX 56094306 56094520 -120879620 - L1ME3A LINE L1 -1 6169 5963 607 230 14 43 chrX 56094573 56094782 -120879358 - L1ME3A LINE L1 -203 5967 5765 303 284 93 0 chrX 56094956 56095171 -120878969 + L1M4 LINE L1 3083 3317 -2829 2040 153 56 32 chrX 56095180 56095591 -120878549 - MSTA LTR MaLR -7 421 1 844 260 65 90 chrX 56095676 56096000 -120878140 + L1MC4 LINE L1 7297 7599 -443 1860 135 0 10 chrX 56096000 56096289 -120877851 + AluJb SINE Alu 1 286 -26 844 260 65 90 chrX 56096289 56096611 -120877529 + L1MC4 LINE L1 7599 7927 -115 273 273 9 45 chrX 56096620 56096730 -120877410 + L1MC4 LINE L1 7912 8017 -25 611 326 60 29 chrX 56096763 56097348 -120876792 + L1M4 LINE L1 3342 3944 -2202 793 253 4 65 chrX 56097420 56097665 -120876475 - L1ME1 LINE L1 -63 6103 5874 256 250 0 0 chrX 56097789 56097857 -120876283 + (TG)n Simple_repeat Simple_repeat 2 69 0 214 231 0 0 chrX 56099943 56099982 -120874158 + (CG)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chrX 56099982 56100013 -120874127 + (CA)n Simple_repeat Simple_repeat 1 31 0 248 238 67 76 chrX 56103444 56103549 -120870591 - MIR SINE MIR -52 210 107 210 254 18 0 chrX 56105217 56105272 -120868868 + CT-rich Low_complexity Low_complexity 1 56 0 267 31 0 0 chrX 56111190 56111222 -120862918 + (CA)n Simple_repeat Simple_repeat 2 33 0 810 249 4 65 chrX 56111346 56111591 -120862549 + L1ME1 LINE L1 5874 6103 -63 561 300 55 72 chrX 56111664 56112014 -120862126 - L1M4 LINE L1 -2202 3944 3607 2574 56 0 25 chrX 56112014 56112333 -120861807 - AluY SINE Alu 0 311 1 561 300 55 72 chrX 56112333 56112595 -120861545 - L1M4 LINE L1 -2539 3607 3342 279 288 0 68 chrX 56112617 56112735 -120861405 - L1MC4 LINE L1 -15 8027 7918 413 267 49 70 chrX 56112790 56113075 -120861065 - L1MC4 LINE L1 -138 7904 7626 862 147 13 0 chrX 56113075 56113225 -120860915 - AluJb SINE Alu -26 286 135 2151 51 0 4 chrX 56113313 56113567 -120860573 - AluY SINE Alu -9 302 50 761 251 24 28 chrX 56113589 56113840 -120860300 - L1MC4 LINE L1 -496 7546 7297 2198 151 52 10 chrX 56113925 56114329 -120859811 + MSTA LTR MaLR 1 421 -7 384 275 106 3 chrX 56114338 56114640 -120859500 - L1M4 LINE L1 -2829 3317 2978 636 254 25 39 chrX 56114646 56114929 -120859211 + L1ME3A LINE L1 5689 5967 -203 308 332 19 51 chrX 56114982 56115196 -120858944 + L1ME3A LINE L1 5963 6169 -1 180 0 0 0 chrX 56115660 56115680 -120858460 + (T)n Simple_repeat Simple_repeat 1 20 0 421 277 38 1 chrX 56115909 56116068 -120858072 + L1ME1 LINE L1 5856 6012 -154 354 302 37 48 chrX 56116101 56116290 -120857850 - L1ME3A LINE L1 -7 6163 5977 6810 80 0 4 chrX 56116380 56117147 -120856993 + L1PA13 LINE L1 4205 4974 -1189 2698 96 3 6 chrX 56117147 56117511 -120856629 - THE1B LTR MaLR -1 363 1 6810 80 0 4 chrX 56117511 56118699 -120855441 + L1PA13 LINE L1 4974 6155 -8 515 168 208 8 chrX 56118801 56118926 -120855214 - L2 LINE L2 -950 2364 2215 501 357 19 16 chrX 56119661 56120031 -120854109 - HERVK11 LTR ERVK -315 6522 6152 274 312 39 38 chrX 56121320 56121700 -120852440 - HERVK11 LTR ERVK -2043 5200 4834 259 279 0 0 chrX 56122095 56122163 -120851977 - HERVK11 LTR ERVK -2962 3875 3808 396 0 0 0 chrX 56124251 56124295 -120849845 + (A)n Simple_repeat Simple_repeat 1 44 0 261 211 0 0 chrX 56124603 56124660 -120849480 - HERVK11 LTR ERVK -7618 335 279 3451 170 21 14 chrX 56125366 56126029 -120848111 - L1MB2 LINE L1 -4 6167 5500 3601 163 13 12 chrX 56126107 56126783 -120847357 - L1MA8 LINE L1 -24 6267 5591 6339 144 30 15 chrX 56126790 56127021 -120847119 - L1MA4A LINE L1 -7 6296 6070 2059 128 0 31 chrX 56127021 56127342 -120846798 - AluJo SINE Alu -1 311 1 6339 144 30 15 chrX 56127342 56129180 -120844960 - L1MA4A LINE L1 -233 6070 4194 1715 151 47 4 chrX 56129180 56129459 -120844681 - AluJb SINE Alu -20 292 2 6339 144 30 15 chrX 56129459 56129585 -120844555 - L1MA4A LINE L1 -2109 4194 4071 212 280 0 0 chrX 56129627 56129677 -120844463 - L2 LINE L2 -1142 2172 2123 426 167 0 24 chrX 56129685 56129824 -120844316 + MER21B LTR ERV1 313 488 -375 1754 167 28 3 chrX 56130601 56130889 -120843251 - AluJb SINE Alu -17 295 1 1261 263 109 22 chrX 56130899 56131618 -120842522 - L1ME3A LINE L1 -211 5951 5170 441 181 95 9 chrX 56131616 56131732 -120842408 - L1ME3 LINE L1 -6 6156 6031 * 397 196 26 143 chrX 56131882 56132071 -120842069 - MER21B LTR ERV1 -599 264 98 364 193 88 35 chrX 56132042 56132156 -120841984 - MER77 LTR ERV1 -404 201 82 * 2297 166 56 29 chrX 56132278 56132723 -120841417 + MSTB2 LTR MaLR 1 457 0 443 90 134 0 chrX 56132763 56132830 -120841310 + MADE1 DNA Mariner 5 80 0 584 144 0 0 chrX 56132954 56133044 -120841096 + FLAM_C SINE Alu 36 125 -18 3838 249 33 33 chrX 56133047 56134282 -120839858 + L1M4 LINE L1 3467 4701 -1445 2273 86 0 4 chrX 56134282 56134593 -120839547 + AluSc SINE Alu 6 315 0 3838 249 33 33 chrX 56134593 56134616 -120839524 + L1M4 LINE L1 4701 4723 -1423 1721 134 3 69 chrX 56134616 56134907 -120839233 - AluJo SINE Alu -3 309 38 3838 249 33 33 chrX 56134907 56135042 -120839098 + L1M4 LINE L1 4722 4862 -1284 4071 199 30 28 chrX 56135051 56135337 -120838803 - L1MB5 LINE L1 -9 6165 5881 2148 120 0 16 chrX 56135337 56135646 -120838494 - AluJb SINE Alu -8 304 1 4071 199 30 28 chrX 56135646 56136682 -120837458 - L1MB5 LINE L1 -293 5881 4843 1758 235 162 60 chrX 56136681 56137749 -120836391 + L1M3e LINE L1 1200 2386 -5149 * 2129 101 15 58 chrX 56137749 56138076 -120836064 - AluSq SINE Alu 0 313 1 1758 235 162 60 chrX 56138076 56138305 -120835835 + L1M3e LINE L1 2386 2590 -4945 1896 171 0 31 chrX 56138336 56138658 -120835482 - AluJb SINE Alu 0 312 1 6473 220 38 15 chrX 56138658 56140790 -120833350 + L1M3e LINE L1 3008 5195 -2370 10827 147 23 78 chrX 56140838 56142992 -120831148 + L1M1 LINE L1 296 2331 -5234 370 248 32 32 chrX 56142992 56143117 -120831023 + L1M1 LINE L1 15 139 -7426 * 2721 182 8 9 chrX 56143096 56144092 -120830048 + L1M1 LINE L1 3165 4160 -3405 1120 137 6 16 chrX 56144093 56144113 -120830027 - AluSg/x SINE Alu -2 310 291 2319 100 0 31 chrX 56144113 56144433 -120829707 - AluSg SINE Alu 0 310 1 1120 137 6 16 chrX 56144433 56144595 -120829545 - AluSg/x SINE Alu -21 291 130 6152 113 46 35 chrX 56144596 56147043 -120827097 - SVA Other Other -518 1386 1 488 238 128 0 chrX 56147064 56147298 -120826842 + L1M1 LINE L1 4162 4461 -3104 1453 141 99 244 chrX 56147304 56147916 -120826224 + L1M1 LINE L1 4982 5484 -2081 377 218 26 0 chrX 56147916 56147994 -120826146 - MLT2B3 LTR ERVL -113 441 362 1453 141 99 244 chrX 56147994 56148302 -120825838 + L1M1 LINE L1 5484 5835 -1730 * 3246 164 20 7 chrX 56148300 56148854 -120825286 - L1M3f LINE L1 -4511 817 257 2373 98 3 0 chrX 56148857 56149162 -120824978 + AluSx SINE Alu 7 312 0 1051 101 27 0 chrX 56149682 56149830 -120824310 - AluSc SINE Alu -6 303 152 198 191 0 0 chrX 56153087 56153129 -120821011 + GA-rich Low_complexity Low_complexity 2 43 0 189 175 0 0 chrX 56156648 56156688 -120817452 + CT-rich Low_complexity Low_complexity 2 41 0 405 0 0 0 chrX 56160491 56160536 -120813604 + (TG)n Simple_repeat Simple_repeat 1 45 0 276 143 0 0 chrX 56162612 56162668 -120811472 + (CA)n Simple_repeat Simple_repeat 2 57 0 864 241 17 51 chrX 56162759 56163034 -120811106 + L1ME1 LINE L1 5852 6112 -54 648 314 68 34 chrX 56163096 56163685 -120810455 - L1M4 LINE L1 -2196 3950 3342 360 300 0 33 chrX 56163707 56163827 -120810313 - L1MC4 LINE L1 -15 8027 7912 967 285 56 73 chrX 56163836 56164157 -120809983 - L1MC4 LINE L1 -115 7927 7621 1850 136 0 30 chrX 56164157 56164452 -120809688 - AluJb SINE Alu -26 286 1 967 285 56 73 chrX 56164452 56164772 -120809368 - L1MC4 LINE L1 -421 7621 7297 2240 157 58 5 chrX 56164859 56165255 -120808885 + MSTA LTR MaLR 3 419 -9 340 261 108 0 chrX 56165265 56165487 -120808653 - L1M4 LINE L1 -2828 3318 3073 2609 83 9 0 chrX 56165514 56165864 -120808276 + THE1A LTR MaLR 3 355 0 7182 97 11 12 chrX 56165864 56166307 -120807833 + THE1A-int LTR MaLR 1 443 -1137 10224 49 1 0 chrX 56166307 56168416 -120805724 + L1PA5 LINE L1 4049 6166 0 7182 97 11 12 chrX 56168416 56169004 -120805136 + THE1A-int LTR MaLR 443 1032 -548 1591 164 51 11 chrX 56170093 56170368 -120803772 + AluJb SINE Alu 1 286 -26 261 0 0 0 chrX 56170368 56170397 -120803743 + (CA)n Simple_repeat Simple_repeat 2 30 0 1041 177 0 0 chrX 56170635 56170799 -120803341 - FRAM SINE Alu -12 164 1 300 298 38 38 chrX 56170945 56171076 -120803064 - MIR3 SINE MIR -2 206 76 211 331 223 8 chrX 56171387 56171517 -120802623 + MIR3 SINE MIR 2 159 -49 1277 191 40 105 chrX 56171640 56172039 -120802101 + MLT1A2 LTR MaLR 1 373 -1 388 217 66 127 chrX 56172323 56172415 -120801725 + MIR SINE MIR 52 148 -114 2409 109 0 0 chrX 56172415 56172726 -120801414 + AluSx SINE Alu 1 311 -1 388 217 66 127 chrX 56172726 56172745 -120801395 + MIR SINE MIR 148 167 -95 1954 145 35 27 chrX 56172745 56173117 -120801023 - THE1C LTR MaLR 0 375 1 388 217 66 127 chrX 56173117 56173170 -120800970 + MIR SINE MIR 167 207 -55 361 203 35 76 chrX 56173176 56173360 -120800780 - L1MC/D LINE L1 -365 5756 5615 709 299 59 22 chrX 56173373 56173731 -120800409 - HsTC2 DNA Tc2 -102 1796 1250 294 285 92 15 chrX 56173729 56173859 -120800281 - HsTC2 DNA Tc2 -1757 141 2 * 2233 200 80 20 chrX 56173919 56174391 -120799749 - L1MA9 LINE L1 -38 6274 5759 318 26 0 0 chrX 56174391 56174430 -120799710 + (TG)n Simple_repeat Simple_repeat 1 39 0 2233 200 80 20 chrX 56174430 56174547 -120799593 - L1MA9 LINE L1 -553 5759 5650 3170 170 8 55 chrX 56174548 56174655 -120799485 + L1 LINE L1 4432 4543 -1603 2152 139 0 0 chrX 56174655 56174949 -120799191 + AluJb SINE Alu 1 294 -18 3170 170 8 55 chrX 56174949 56175053 -120799087 + L1 LINE L1 4543 4650 -1496 2021 177 0 0 chrX 56175053 56175364 -120798776 + AluJo SINE Alu 1 311 -1 3170 170 8 55 chrX 56175364 56175791 -120798349 + L1 LINE L1 4650 5030 -1116 2315 94 3 3 chrX 56175791 56176089 -120798051 + AluSp SINE Alu 3 300 -13 3170 170 8 55 chrX 56176089 56176223 -120797917 + L1 LINE L1 5030 5169 -977 1485 85 29 4 chrX 56176238 56176791 -120797349 + L1PB3 LINE L1 5530 6147 -7 2056 181 42 60 chrX 56176797 56177185 -120796955 + L1 LINE L1 2897 3290 -2856 2020 123 45 0 chrX 56177185 56177477 -120796663 + AluSg SINE Alu 3 307 -3 2056 181 42 60 chrX 56177477 56177531 -120796609 + L1 LINE L1 3290 3343 -2803 2470 91 0 0 chrX 56177531 56177840 -120796300 - AluSc SINE Alu 0 309 1 2056 181 42 60 chrX 56177840 56178015 -120796125 + L1 LINE L1 3343 3504 -2642 846 103 0 9 chrX 56178021 56178137 -120796003 + AluSq/x SINE Alu 1 115 -197 593 345 116 10 chrX 56178197 56178603 -120795537 - L2 LINE L2 -665 2649 2201 2295 85 0 3 chrX 56178613 56178935 -120795205 + AluSg SINE Alu 1 321 0 328 266 16 73 chrX 56178937 56179019 -120795121 + MER58 DNA MER1_type 2 87 -254 180 0 0 0 chrX 56179019 56179039 -120795101 + (TA)n Simple_repeat Simple_repeat 2 21 0 2117 139 0 3 chrX 56179039 56179333 -120794807 - AluSx SINE Alu -19 293 1 328 266 16 73 chrX 56179333 56179373 -120794767 + MER58 DNA MER1_type 85 118 -223 * 436 204 32 0 chrX 56179353 56179446 -120794694 + MER58 DNA MER1_type 2319 2414 -6 189 336 89 31 chrX 56179453 56179809 -120794331 - L2 LINE L2 -1105 2209 1740 2272 96 0 0 chrX 56179809 56180091 -120794049 + AluSg SINE Alu 11 292 -18 189 336 89 31 chrX 56180091 56180258 -120793882 - L2 LINE L2 -1574 1740 1584 2356 108 0 3 chrX 56180673 56180978 -120793162 + AluSq SINE Alu 1 304 -9 376 236 174 0 chrX 56181140 56181282 -120792858 - MIR SINE MIR -70 138 25 293 257 105 8 chrX 56181588 56181721 -120792419 - MIR SINE MIR -63 145 38 893 156 0 0 chrX 56182001 56182136 -120792004 + AluSg/x SINE Alu 173 307 -3 303 340 123 20 chrX 56182380 56182583 -120791557 - L2 LINE L2 -494 2820 2597 245 296 74 0 chrX 56182659 56182740 -120791400 - L1ME LINE L1 -535 5635 5549 1357 124 0 15 chrX 56183559 56183760 -120790380 + AluSg/x SINE Alu 115 312 0 621 124 159 0 chrX 56183794 56183907 -120790233 + FLAM_C SINE Alu 1 131 -2 1808 178 48 84 chrX 56184025 56184441 -120789699 + MLT1D LTR MaLR 1 396 -109 2204 98 0 50 chrX 56184441 56184759 -120789381 - AluSq SINE Alu -11 302 1 1808 178 48 84 chrX 56184759 56184866 -120789274 + MLT1D LTR MaLR 396 505 0 561 268 27 35 chrX 56185141 56185466 -120788674 + MLT1I LTR MaLR 42 402 -7 1822 161 3 23 chrX 56185482 56185781 -120788359 - AluJo SINE Alu -19 293 1 346 298 0 19 chrX 56186663 56186767 -120787373 + MER5B DNA MER1_type 2 103 -75 1579 210 119 49 chrX 56187073 56187545 -120786595 + MLT1D LTR MaLR 1 505 0 1822 153 7 21 chrX 56187796 56187995 -120786145 - AluJb SINE Alu 0 304 109 3852 93 35 4 chrX 56187995 56188167 -120785973 - MER41A LTR ERV1 0 554 389 2149 115 0 0 chrX 56188167 56188489 -120785651 - AluSx SINE Alu 0 312 5 3852 93 35 4 chrX 56188489 56188853 -120785287 - MER41A LTR ERV1 -165 389 1 1822 153 7 21 chrX 56188853 56188961 -120785179 - AluJb SINE Alu -195 109 1 23 33 0 0 chrX 56188961 56188991 -120785149 + AT_rich Low_complexity Low_complexity 1 30 0 435 313 57 0 chrX 56188996 56189172 -120784968 - L2 LINE L2 -18 3295 3110 2414 89 0 35 chrX 56189172 56189485 -120784655 + AluSx SINE Alu 1 302 -10 314 146 0 55 chrX 56189486 56189541 -120784599 - L1MC4 LINE L1 -1339 6703 6652 551 254 37 107 chrX 56189603 56189847 -120784293 - MIR SINE MIR -35 227 1 2234 114 3 0 chrX 56191056 56191364 -120782776 - AluSp SINE Alu -4 309 1 884 257 50 5 chrX 56191718 56191936 -120782204 + MIR SINE MIR 15 242 -20 2126 121 10 10 chrX 56192083 56192390 -120781750 - AluSx SINE Alu -5 307 1 556 200 8 50 chrX 56192414 56192534 -120781606 - MIR SINE MIR -146 116 2 2332 96 3 0 chrX 56193583 56193874 -120780266 - AluSg SINE Alu -18 292 1 1077 214 54 33 chrX 56193878 56193905 -120780235 - L1MC4 LINE L1 -1 8041 8016 518 41 0 184 chrX 56193905 56194003 -120780137 + MADE1 DNA Mariner 1 80 0 1077 214 54 33 chrX 56194003 56194306 -120779834 - L1MC4 LINE L1 -26 8016 7704 1947 152 0 34 chrX 56194318 56194641 -120779499 - AluJo SINE Alu 0 312 1 2507 100 0 0 chrX 56194649 56194959 -120779181 - AluSg SINE Alu 0 310 1 741 197 48 53 chrX 56195131 56195319 -120778821 + MIR SINE MIR 65 251 -11 1722 142 26 42 chrX 56195323 56195634 -120778506 + AluJo SINE Alu 4 309 -3 289 310 103 0 chrX 56195907 56196023 -120778117 + MIR SINE MIR 77 204 -58 280 304 27 34 chrX 56196217 56196365 -120777775 + L2 LINE L2 2914 3060 -212 602 234 57 66 chrX 56197393 56197607 -120776533 - MIR SINE MIR -24 238 32 326 301 21 11 chrX 56197846 56197939 -120776201 - MIR SINE MIR -131 131 38 1307 98 22 33 chrX 56198206 56198389 -120775751 - AluSg/x SINE Alu 0 310 130 195 42 0 0 chrX 56198389 56198413 -120775727 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2428 77 0 0 chrX 56198413 56198698 -120775442 - AluSp SINE Alu -28 285 1 2136 113 69 9 chrX 56198749 56199067 -120775073 + MER1B DNA MER1_type 1 337 0 261 43 64 0 chrX 56199652 56199699 -120774441 + CT-rich Low_complexity Low_complexity 1 50 0 277 303 92 38 chrX 56200049 56200234 -120773906 - L1ME3A LINE L1 -208 5962 5768 198 346 0 13 chrX 56200376 56200454 -120773686 + MIR SINE MIR 161 237 -25 22 0 0 0 chrX 56200537 56200559 -120773581 + AT_rich Low_complexity Low_complexity 1 22 0 1755 180 3 3 chrX 56200562 56200851 -120773289 - AluJo SINE Alu -23 289 1 253 231 245 49 chrX 56201449 56201592 -120772548 + MIR3 SINE MIR 11 181 -27 23 0 0 0 chrX 56202765 56202788 -120771352 + GC_rich Low_complexity Low_complexity 1 23 0 185 289 35 84 chrX 56204305 56204447 -120769693 - L2 LINE L2 -636 2678 2544 1907 188 92 15 chrX 56204883 56205066 -120769074 + MLT1D LTR MaLR 1 169 -336 2040 148 7 0 chrX 56205066 56205371 -120768769 + AluSx SINE Alu 2 308 -4 1907 188 92 15 chrX 56205371 56205476 -120768664 + MLT1D LTR MaLR 169 265 -240 2267 113 0 0 chrX 56205476 56205778 -120768362 + AluSx SINE Alu 1 302 -10 1907 188 92 15 chrX 56205778 56205957 -120768183 + MLT1D LTR MaLR 265 505 0 2308 105 6 16 chrX 56207452 56207767 -120766373 - AluSx SINE Alu 0 312 1 1074 173 0 0 chrX 56208209 56208371 -120765769 - FAM SINE Alu -13 162 1 2358 89 7 7 chrX 56209122 56209426 -120764714 - AluSq SINE Alu -9 304 1 911 180 6 18 chrX 56210101 56210268 -120763872 - MIR SINE MIR -19 243 79 279 287 84 127 chrX 56210265 56210634 -120763506 + L2 LINE L2 2914 3266 -6 * 235 384 78 4 chrX 56210874 56211119 -120763021 + L2 LINE L2 2084 2346 -968 2553 60 3 0 chrX 56211187 56211488 -120762652 + AluY SINE Alu 1 302 -9 184 341 0 12 chrX 56211813 56211898 -120762242 + L2 LINE L2 2871 2954 -318 295 247 133 18 chrX 56211934 56212127 -120762013 - MIR SINE MIR -3 259 38 240 246 14 29 chrX 56213630 56213699 -120760441 + Charlie8 DNA MER1_type 8 75 -2342 265 303 92 106 chrX 56214536 56214896 -120759244 - L2 LINE L2 -2 3270 2916 6841 108 9 27 chrX 56216312 56217271 -120756869 + L1MA2 LINE L1 4484 5458 -846 2022 154 13 0 chrX 56217271 56217576 -120756564 + AluSx SINE Alu 1 309 -3 6841 108 9 27 chrX 56217576 56217912 -120756228 + L1MA2 LINE L1 5458 5798 -506 2103 112 0 3 chrX 56217912 56218222 -120755918 + AluSx SINE Alu 1 309 0 6841 108 9 27 chrX 56218222 56218387 -120755753 + L1MA2 LINE L1 5798 5964 -340 2245 89 11 0 chrX 56218387 56218689 -120755451 - AluSc SINE Alu 0 309 7 6841 108 9 27 chrX 56218689 56219074 -120755066 + L1MA2 LINE L1 5964 6304 0 1914 119 10 53 chrX 56220603 56220905 -120753235 + AluSx SINE Alu 1 289 -23 195 268 74 47 chrX 56222591 56222833 -120751307 + L2 LINE L2 1978 2306 -1008 239 292 94 0 chrX 56222983 56223079 -120751061 + L2 LINE L2 2317 2421 -893 701 190 4 3 chrX 56223304 56223441 -120750699 + L1ME1 LINE L1 6039 6184 0 198 0 0 0 chrX 56223525 56223547 -120750593 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2032 124 7 0 chrX 56223551 56223825 -120750315 - AluSx SINE Alu -36 276 1 1921 140 16 22 chrX 56224363 56224677 -120749463 + AluSx SINE Alu 1 312 0 23 0 0 0 chrX 56224928 56224951 -120749189 + AT_rich Low_complexity Low_complexity 1 23 0 1073 157 0 0 chrX 56225744 56225916 -120748224 + FRAM SINE Alu 1 172 -4 2229 114 30 0 chrX 56226565 56226864 -120747276 + AluSx SINE Alu 1 308 -4 22 0 0 0 chrX 56227138 56227160 -120746980 + AT_rich Low_complexity Low_complexity 1 22 0 1064 158 0 0 chrX 56227956 56228127 -120746013 + FRAM SINE Alu 2 172 -4 2213 102 7 3 chrX 56228776 56229071 -120745069 + AluSx SINE Alu 1 296 -16 1448 123 178 8 chrX 56229691 56229944 -120744196 + AluJb SINE Alu 1 296 -16 2213 129 6 3 chrX 56229994 56230305 -120743835 + AluSx SINE Alu 1 312 0 672 179 26 64 chrX 56230332 56230488 -120743652 + FAM SINE Alu 22 171 -14 1351 150 139 25 chrX 56230603 56230877 -120743263 + AluJo SINE Alu 1 305 -7 2289 101 0 0 chrX 56230901 56231214 -120742926 - AluSx SINE Alu 0 313 1 305 257 40 124 chrX 56231233 56231435 -120742705 + L1ME4a LINE L1 5926 6110 -11 322 261 169 15 chrX 56231485 56231615 -120742525 - L2 LINE L2 0 3313 3164 227 307 53 26 chrX 56231616 56231664 -120742476 + MER5A DNA MER1_type 71 116 -73 1957 125 6 51 chrX 56231664 56231976 -120742164 + AluSx SINE Alu 1 298 -14 227 307 53 26 chrX 56231976 56232041 -120742099 + MER5A DNA MER1_type 116 187 -2 * 249 282 0 26 chrX 56231977 56232055 -120742085 - MER5A DNA MER1_type -111 78 3 39 0 0 0 chrX 56232215 56232254 -120741886 + AT_rich Low_complexity Low_complexity 1 39 0 724 289 53 34 chrX 56232372 56232729 -120741411 + L2 LINE L2 1295 1658 -1656 855 222 83 70 chrX 56232755 56232849 -120741291 + L2 LINE L2 2233 2324 -990 2460 81 0 0 chrX 56232849 56233144 -120740996 + AluSq SINE Alu 1 295 -18 855 222 83 70 chrX 56233144 56233351 -120740789 + L2 LINE L2 2324 2538 -776 459 206 61 38 chrX 56233364 56233495 -120740645 - MER104 DNA Tc2 -44 136 3 207 299 0 0 chrX 56233495 56233572 -120740568 + L2 LINE L2 2532 2608 -706 248 281 216 22 chrX 56233722 56233861 -120740279 + L2 LINE L2 3107 3272 0 266 265 44 0 chrX 56234060 56234128 -120740012 + L3 LINE CR1 966 1036 -541 1973 156 0 13 chrX 56234415 56234730 -120739410 - AluJb SINE Alu -1 311 1 595 162 0 0 chrX 56234764 56234869 -120739271 + L1 LINE L1 3478 3582 -2564 2435 69 0 13 chrX 56234870 56235176 -120738964 - AluY SINE Alu -9 302 1 24 0 0 0 chrX 56235176 56235200 -120738940 + AT_rich Low_complexity Low_complexity 1 24 0 1846 143 17 13 chrX 56235207 56235507 -120738633 + AluJb SINE Alu 1 301 -11 1072 90 0 0 chrX 56235611 56235744 -120738396 + AluSq/x SINE Alu 1 133 -179 2243 110 0 31 chrX 56235751 56236069 -120738071 + AluSx SINE Alu 1 308 -4 828 140 0 0 chrX 56236306 56236420 -120737720 - FLAM_C SINE Alu -25 118 5 644 250 140 18 chrX 56236578 56236850 -120737290 - L1MC4a LINE L1 -1835 5973 5669 618 261 107 14 chrX 56237136 56237351 -120736789 - L1MC4a LINE L1 -2164 5644 5410 1552 144 43 0 chrX 56237470 56237726 -120736414 - AluJb SINE Alu -11 301 35 331 296 23 35 chrX 56237998 56238170 -120735970 - L1P LINE L1 -1098 5048 4879 329 102 20 0 chrX 56238362 56238411 -120735729 + AluJ/FRAM SINE Alu 233 282 -20 281 284 136 19 chrX 56238510 56238672 -120735468 + L3 LINE CR1 1267 1447 -130 2549 71 0 0 chrX 56238985 56239294 -120734846 + AluY SINE Alu 1 309 -2 514 285 116 91 chrX 56240205 56241119 -120733021 + L1M2 LINE L1 450 1451 -5398 356 227 23 47 chrX 56241730 56241858 -120732282 + G-rich Low_complexity Low_complexity 2 126 0 388 281 264 6 chrX 56242141 56242260 -120731880 - MIR SINE MIR -27 235 148 2285 73 3 17 chrX 56242260 56242560 -120731580 + AluSg SINE Alu 1 296 -14 388 281 264 6 chrX 56242560 56242618 -120731522 - MIR SINE MIR -114 148 12 2198 119 0 7 chrX 56243359 56243662 -120730478 - AluSx SINE Alu -11 301 1 482 213 67 37 chrX 56246474 56246638 -120727502 + L1ME2 LINE L1 5559 5727 -394 1964 148 3 7 chrX 56246966 56247269 -120726871 - AluJo SINE Alu -6 306 5 855 202 100 63 chrX 56247397 56247690 -120726450 + L1ME2 LINE L1 5741 6096 -68 2248 114 0 0 chrX 56247690 56247987 -120726153 + AluY SINE Alu 1 297 -14 855 202 100 63 chrX 56247987 56248049 -120726091 + L1ME2 LINE L1 6096 6154 -10 1839 167 7 0 chrX 56248060 56248347 -120725793 + AluSx SINE Alu 1 289 -23 23 0 0 0 chrX 56248550 56248573 -120725567 + AT_rich Low_complexity Low_complexity 1 23 0 1599 143 17 47 chrX 56248656 56248956 -120725184 + AluJb SINE Alu 1 291 -21 881 271 23 23 chrX 56249087 56249345 -120724795 - MIR SINE MIR 0 262 5 2317 102 7 0 chrX 56249421 56249724 -120724416 + AluSg SINE Alu 2 306 -4 2529 65 3 0 chrX 56249725 56250032 -120724108 + AluSg SINE Alu 2 309 -1 1130 180 0 67 chrX 56250035 56250274 -120723866 + AluJb SINE Alu 85 307 -5 2389 69 3 0 chrX 56250420 56250710 -120723430 - AluY SINE Alu -20 291 1 2430 104 0 0 chrX 56250858 56251212 -120722928 - AluSx SINE Alu 0 354 1 1139 219 15 0 chrX 56252633 56252838 -120721302 - MER58A DNA MER1_type -16 208 1 1107 246 55 33 chrX 56252870 56253076 -120721064 - MER46C DNA MER2_type -1 337 120 2472 122 19 24 chrX 56253076 56253453 -120720687 + THE1C LTR MaLR 1 375 0 1107 246 55 33 chrX 56253453 56253576 -120720564 - MER46C DNA MER2_type -218 120 1 183 129 0 0 chrX 56253588 56253619 -120720521 + (TCTCC)n Simple_repeat Simple_repeat 3 33 0 1214 201 27 9 chrX 56253886 56254105 -120720035 + MER58A DNA MER1_type 1 223 -1 1735 167 7 20 chrX 56254229 56254522 -120719618 + AluSx SINE Alu 1 289 -23 45 16 0 16 chrX 56254547 56254591 -120719549 + AT_rich Low_complexity Low_complexity 1 45 -17 2278 96 0 7 chrX 56254591 56254883 -120719257 - AluSq SINE Alu -23 290 1 45 16 0 16 chrX 56254883 56254901 -120719239 + AT_rich Low_complexity Low_complexity 45 62 0 186 256 141 13 chrX 56255878 56255956 -120718184 - L2 LINE L2 -213 3059 2972 288 190 101 13 chrX 56256138 56256217 -120717923 + MIR SINE MIR 119 204 -58 455 200 0 21 chrX 56256953 56257048 -120717092 + L1MA10 LINE L1 6242 6334 0 971 164 7 0 chrX 56257100 56257252 -120716888 - AluJo SINE Alu -23 289 137 1655 190 3 7 chrX 56257292 56257576 -120716564 - AluJo SINE Alu -29 283 1 644 132 175 18 chrX 56258280 56258394 -120715746 - AluJo SINE Alu -170 132 1 2438 78 0 0 chrX 56258530 56258824 -120715316 + AluSq SINE Alu 1 294 -19 228 200 0 0 chrX 56259142 56259192 -120714948 + (TA)n Simple_repeat Simple_repeat 2 51 0 226 217 17 17 chrX 56259201 56259261 -120714879 - L1MC4 LINE L1 -1341 6701 6642 2294 93 13 3 chrX 56259456 56259758 -120714382 - AluSc SINE Alu -4 305 1 1855 134 3 31 chrX 56260702 56260992 -120713148 + AluSx SINE Alu 27 308 -4 1995 134 21 0 chrX 56261101 56261392 -120712748 + AluSx SINE Alu 1 297 -15 2050 122 16 13 chrX 56261507 56261818 -120712322 + AluJb SINE Alu 1 312 0 319 248 131 36 chrX 56261934 56262071 -120712069 + L1ME3A LINE L1 6020 6169 -1 31 0 0 0 chrX 56262927 56262958 -120711182 + AT_rich Low_complexity Low_complexity 1 31 0 1983 144 0 22 chrX 56263999 56264318 -120709822 - AluJb SINE Alu 0 312 1 405 0 0 0 chrX 56264578 56264623 -120709517 + (CA)n Simple_repeat Simple_repeat 2 46 0 465 245 145 25 chrX 56265766 56265925 -120708215 + MER5B DNA MER1_type 1 178 0 2225 117 10 0 chrX 56265978 56266286 -120707854 + AluSx SINE Alu 1 311 -1 2348 82 0 7 chrX 56266365 56266668 -120707472 + AluSx SINE Alu 2 302 -10 1779 193 109 109 chrX 56266778 56267073 -120707067 - L1MC5 LINE L1 -46 7915 7621 1934 141 17 3 chrX 56267073 56267370 -120706770 + AluSx SINE Alu 1 301 -11 1779 193 109 109 chrX 56267370 56267519 -120706621 - L1MC5 LINE L1 -340 7621 7473 2006 93 0 67 chrX 56267519 56267832 -120706308 - AluSx SINE Alu -20 292 1 1779 193 109 109 chrX 56267832 56268110 -120706030 - L1MC5 LINE L1 -488 7473 7189 2331 97 0 0 chrX 56268110 56268408 -120705732 - AluSx SINE Alu -14 298 1 1779 193 109 109 chrX 56268408 56268563 -120705577 - L1MC5 LINE L1 -771 7190 7036 2147 131 63 34 chrX 56268567 56268980 -120705160 - L1MA7 LINE L1 0 6291 5867 1615 161 79 8 chrX 56268980 56269210 -120704930 + L1M2 LINE L1 5109 5321 -970 980 168 7 7 chrX 56269210 56269391 -120704749 + FRAM SINE Alu 1 45 0 1615 161 79 8 chrX 56269391 56269619 -120704521 + L1M2 LINE L1 5321 5600 -691 1105 150 47 94 chrX 56269611 56269950 -120704190 - L1MC5 LINE L1 -910 7051 6729 * 1575 141 107 0 chrX 56269991 56270253 -120703887 - AluJo SINE Alu -22 290 1 965 151 52 47 chrX 56270321 56270434 -120703706 - MER47A DNA MER2_type -1958 365 249 1856 176 30 0 chrX 56270434 56270735 -120703405 - AluJo SINE Alu -2 310 1 965 151 52 47 chrX 56270735 56270813 -120703327 - MER47A DNA MER2_type -2074 249 173 3140 121 55 4 chrX 56270830 56271301 -120702839 - L1PA15 LINE L1 0 6165 5671 836 113 8 16 chrX 56271303 56271427 -120702713 - FRAM SINE Alu -13 163 41 931 182 0 12 chrX 56271429 56271594 -120702546 - MER47A DNA MER2_type -186 180 18 240 161 54 54 chrX 56272321 56272377 -120701763 + MER103 DNA DNA 34 89 -77 26 0 0 0 chrX 56274285 56274311 -120699829 + AT_rich Low_complexity Low_complexity 1 26 0 216 294 12 12 chrX 56274472 56274557 -120699583 + GA-rich Low_complexity Low_complexity 1 85 0 1038 220 84 4 chrX 56275364 56275614 -120698526 + MER46C DNA MER2_type 68 337 -1 2094 104 17 3 chrX 56275672 56275960 -120698180 + AluSx SINE Alu 1 292 -20 243 0 0 0 chrX 56275964 56275991 -120698149 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 297 0 0 0 chrX 56275990 56276023 -120698117 + (CA)n Simple_repeat Simple_repeat 2 34 0 2175 114 3 3 chrX 56278786 56279085 -120695055 + AluSq SINE Alu 2 300 -13 840 151 0 0 chrX 56280269 56280395 -120693745 + FLAM_A SINE Alu 1 126 -7 297 317 50 28 chrX 56280705 56280885 -120693255 + MIR SINE MIR 74 257 -5 2449 77 0 3 chrX 56282155 56282455 -120691685 + AluSq SINE Alu 1 299 -14 2509 75 3 0 chrX 56282490 56282795 -120691345 + AluSp SINE Alu 1 306 -7 203 256 0 0 chrX 56285998 56286041 -120688099 + GA-rich Low_complexity Low_complexity 2 44 0 277 239 171 26 chrX 56288243 56288360 -120685780 - L2 LINE L2 0 3272 3139 325 206 0 15 chrX 56288639 56288707 -120685433 - MLT1E1 LTR MaLR 0 654 588 281 231 0 0 chrX 56288818 56288870 -120685270 + LTR30 LTR ERV1 1 52 -670 1445 106 9 115 chrX 56288870 56289199 -120684941 + LTR12 LTR ERV1 55 417 -2021 216 0 0 0 chrX 56289199 56289223 -120684917 + (CCCA)n Simple_repeat Simple_repeat 3 26 0 257 294 11 0 chrX 56289233 56289325 -120684815 + LTR30 LTR ERV1 551 643 -79 732 109 0 4 chrX 56289325 56289432 -120684708 + LTR12 LTR ERV1 170 710 -4 1563 52 14 245 chrX 56290237 56290387 -120683753 + LTR12 LTR ERV1 1 18 -696 2480 82 0 0 chrX 56290387 56290690 -120683450 + AluY SINE Alu 1 303 -8 1563 52 14 245 chrX 56290690 56290906 -120683234 + LTR12 LTR ERV1 18 282 -432 355 224 0 0 chrX 56290908 56290984 -120683156 + LTR30 LTR ERV1 548 623 -99 834 108 25 8 chrX 56290985 56291105 -120683035 + LTR12 LTR ERV1 359 480 -234 2413 103 0 0 chrX 56292342 56292654 -120681486 - AluSq SINE Alu -1 312 1 1119 151 111 96 chrX 56292686 56292957 -120681183 - AluJb SINE Alu -21 291 17 1912 133 0 40 chrX 56293799 56294099 -120680041 + AluJb SINE Alu 7 294 -18 2325 84 0 0 chrX 56294416 56294724 -120679416 + AluSq SINE Alu 1 308 0 2351 103 0 0 chrX 56294796 56295097 -120679043 - AluSg SINE Alu -9 301 1 405 188 12 0 chrX 56295131 56295211 -120678929 - AluJb SINE Alu -113 199 119 2001 140 13 32 chrX 56295426 56295741 -120678399 + AluJb SINE Alu 1 309 -3 2213 120 3 0 chrX 56296549 56296858 -120677282 - AluSx SINE Alu -2 310 1 214 93 23 23 chrX 56296901 56296944 -120677196 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 2287 93 0 13 chrX 56297389 56297691 -120676449 - AluSg SINE Alu -12 298 1 214 93 23 23 chrX 56297734 56297777 -120676363 + (GAAAA)n Simple_repeat Simple_repeat 3 45 0 2316 83 0 13 chrX 56298222 56298524 -120675616 - AluSg SINE Alu -12 298 1 1346 70 0 0 chrX 56298605 56298797 -120675343 + AluY SINE Alu 124 315 0 2021 116 0 33 chrX 56298811 56299134 -120675006 + AluSx SINE Alu 1 312 0 1947 44 0 0 chrX 56299254 56299479 -120674661 - AluY SINE Alu -2 309 85 2466 61 0 3 chrX 56299587 56299884 -120674256 - AluY SINE Alu -15 296 1 2433 88 0 3 chrX 56299935 56300241 -120673899 + AluSg SINE Alu 6 310 0 1976 122 10 14 chrX 56300454 56300750 -120673390 + AluSx SINE Alu 1 295 -17 627 115 10 29 chrX 56300828 56300932 -120673208 - AluJb SINE Alu -186 126 25 23 0 0 0 chrX 56300943 56300966 -120673174 + AT_rich Low_complexity Low_complexity 1 23 0 848 238 0 0 chrX 56300966 56301130 -120673010 + FAM SINE Alu 4 167 -8 1378 208 58 95 chrX 56301165 56301436 -120672704 - MLT1E3 LTR MaLR -57 567 312 2331 81 27 6 chrX 56301436 56301769 -120672371 - L1MA3 LINE L1 -1 6304 5965 1378 208 58 95 chrX 56301769 56301877 -120672263 - MLT1E3 LTR MaLR -312 312 202 923 103 27 137 chrX 56301884 56301915 -120672225 - L1MB2 LINE L1 -1 6170 6137 1719 109 0 85 chrX 56301915 56302234 -120671906 + AluSx SINE Alu 21 312 0 923 103 27 137 chrX 56302234 56302263 -120671877 - L1MB2 LINE L1 -34 6137 6106 1023 163 6 6 chrX 56302263 56302429 -120671711 - AluJo SINE Alu 0 302 137 923 103 27 137 chrX 56302429 56302553 -120671587 - L1MB2 LINE L1 -65 6106 6055 1635 182 0 34 chrX 56302553 56302850 -120671290 + AluJo SINE Alu 1 287 -25 923 103 27 137 chrX 56302850 56303002 -120671138 - L1MB2 LINE L1 -116 6055 5888 1267 181 38 0 chrX 56303002 56303212 -120670928 - MLT1E3 LTR MaLR -406 218 1 361 311 142 32 chrX 56303697 56304137 -120670003 + L2 LINE L2 2528 3010 -262 189 0 0 0 chrX 56304440 56304461 -120669679 + (T)n Simple_repeat Simple_repeat 1 21 0 889 158 0 7 chrX 56304566 56304731 -120669409 - FRAM SINE Alu 0 40 1 811 78 0 0 chrX 56304731 56304833 -120669307 - LTR12 LTR ERV1 0 714 613 303 311 8 0 chrX 56304833 56304952 -120669188 - LTR30 LTR ERV1 -79 643 524 1030 86 6 24 chrX 56304952 56305108 -120669032 - LTR12 LTR ERV1 -432 2006 54 252 235 0 0 chrX 56305109 56305160 -120668980 - LTR30 LTR ERV1 -670 52 2 952 158 12 36 chrX 56305160 56305325 -120668815 - AluJo SINE Alu -151 161 1 476 316 86 68 chrX 56305587 56306097 -120668043 + L2 LINE L2 1521 2045 -1269 2271 98 0 10 chrX 56306097 56306392 -120667748 - AluSx SINE Alu -20 292 1 476 316 86 68 chrX 56306392 56306486 -120667654 + L2 LINE L2 2045 2136 -1178 242 0 0 0 chrX 56306487 56306514 -120667626 - LTR40a LTR ERVL 0 519 493 2391 97 0 3 chrX 56306581 56306892 -120667248 - AluY SINE Alu -1 310 1 1973 155 3 0 chrX 56306895 56307191 -120666949 - AluSx SINE Alu -15 297 1 2000 208 83 57 chrX 56307272 56307796 -120666344 + LTR68 LTR ERV1 144 686 -54 2483 79 3 0 chrX 56307796 56308100 -120666040 - AluSp SINE Alu -5 308 4 2000 208 83 57 chrX 56308100 56308153 -120665987 + LTR68 LTR ERV1 686 736 -4 251 342 235 4 chrX 56308156 56308399 -120665741 + L2 LINE L2 2128 2426 -888 488 203 80 108 chrX 56308624 56308748 -120665392 + LTR67 LTR ERVL 352 478 -79 1866 146 0 45 chrX 56308748 56308920 -120665220 - AluJo SINE Alu -17 295 117 195 42 0 0 chrX 56308920 56308944 -120665196 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2065 121 3 24 chrX 56308944 56309234 -120664906 - AluSx SINE Alu -28 284 1 1866 146 0 45 chrX 56309234 56309369 -120664771 - AluJo SINE Alu -193 119 1 488 203 80 108 chrX 56309369 56309456 -120664684 + LTR67 LTR ERVL 478 557 0 551 334 63 20 chrX 56309477 56309779 -120664361 + L2 LINE L2 2447 2761 -553 1927 155 0 3 chrX 56309817 56310113 -120664027 + AluJb SINE Alu 1 295 -17 228 35 0 0 chrX 56310162 56310191 -120663949 + (CA)n Simple_repeat Simple_repeat 1 29 0 2116 116 0 49 chrX 56310290 56310618 -120663522 - AluJo SINE Alu 0 312 1 243 0 0 0 chrX 56310811 56310838 -120663302 + (TA)n Simple_repeat Simple_repeat 2 28 0 189 0 0 0 chrX 56310837 56310858 -120663282 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 223 203 0 17 chrX 56310858 56310917 -120663223 + (TA)n Simple_repeat Simple_repeat 2 59 0 708 129 17 17 chrX 56310919 56311035 -120663105 - AluSg/x SINE Alu -15 297 182 1004 155 0 55 chrX 56311170 56311351 -120662789 + AluJo SINE Alu 1 171 -141 1701 191 7 0 chrX 56311395 56311683 -120662457 + AluJb SINE Alu 1 290 -22 2660 170 67 9 chrX 56311683 56312207 -120661933 - L1MB5 LINE L1 -9 6165 5612 2305 67 0 57 chrX 56312207 56312522 -120661618 - AluY SINE Alu -14 297 1 1309 160 61 103 chrX 56312524 56312686 -120661454 - AluJo SINE Alu -13 299 155 278 0 54 0 chrX 56312686 56312723 -120661417 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1309 160 61 103 chrX 56312723 56312872 -120661268 - AluJo SINE Alu -157 155 1 31 0 0 0 chrX 56312872 56312903 -120661237 + AT_rich Low_complexity Low_complexity 1 31 0 2183 99 3 0 chrX 56312904 56313186 -120660954 - AluSx SINE Alu -29 283 1 3401 137 54 15 chrX 56313186 56313717 -120660423 - L1MC3 LINE L1 -194 7591 7082 210 118 0 0 chrX 56313717 56313751 -120660389 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 3401 137 54 15 chrX 56313751 56313787 -120660353 - L1MC3 LINE L1 -703 7082 7049 2000 148 0 3 chrX 56313787 56314077 -120660063 - AluJb SINE Alu -23 289 1 3401 137 54 15 chrX 56314077 56314098 -120660042 - L1MC3 LINE L1 -736 7049 6979 225 132 0 0 chrX 56314124 56314162 -120659978 + (T)n Simple_repeat Simple_repeat 1 38 0 1048 125 24 36 chrX 56314162 56314330 -120659810 - FRAM SINE Alu 0 166 1 1627 198 7 77 chrX 56314625 56315029 -120659111 - MLT2C1 LTR ERVL 0 397 22 219 217 0 22 chrX 56315113 56315159 -120658981 + GA-rich Low_complexity Low_complexity 1 45 0 597 94 0 0 chrX 56315561 56315646 -120658494 + (TA)n Simple_repeat Simple_repeat 2 86 0 2070 125 14 0 chrX 56315646 56315933 -120658207 - AluSx SINE Alu -21 291 1 2194 133 3 0 chrX 56315958 56316266 -120657874 - AluSx SINE Alu -1 311 3 348 296 19 0 chrX 56316284 56316392 -120657748 + L1MC4a LINE L1 5674 5783 -2025 252 250 0 0 chrX 56316408 56316460 -120657680 + LTR30 LTR ERV1 1 52 -670 1676 105 107 48 chrX 56316460 56316816 -120657324 + LTR12 LTR ERV1 57 2032 -406 404 200 11 0 chrX 56316817 56316907 -120657233 + LTR30 LTR ERV1 553 643 -79 697 103 55 24 chrX 56316907 56317043 -120657097 + LTR12 LTR ERV1 301 714 0 * 6574 109 10 30 chrX 56317043 56317843 -120656297 + HERV9 LTR ERV1 65 845 -7554 2254 93 7 3 chrX 56317843 56318143 -120655997 - AluSq SINE Alu -12 301 1 6574 109 10 30 chrX 56318143 56318297 -120655843 + HERV9 LTR ERV1 845 1000 -7399 * 29040 82 7 7 chrX 56318296 56318374 -120655766 + HERV9 LTR ERV1 1165 1241 -7158 182 37 37 0 chrX 56318374 56318401 -120655739 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 29040 82 7 7 chrX 56318401 56322116 -120652024 + HERV9 LTR ERV1 1241 4959 -3440 369 206 0 0 chrX 56322116 56322218 -120651922 + GA-rich Low_complexity Low_complexity 1 102 0 2377 188 98 65 chrX 56322221 56323067 -120651073 + Harlequin LTR ERV1 867 1740 -5156 * 5815 84 9 8 chrX 56323065 56323838 -120650302 + Harlequin LTR ERV1 7626 8399 0 258 231 0 0 chrX 56323838 56323890 -120650250 + LTR30 LTR ERV1 1 52 -670 1260 59 267 0 chrX 56323890 56324077 -120650063 + LTR12 LTR ERV1 53 289 -425 366 174 0 0 chrX 56324077 56324146 -120649994 + LTR30 LTR ERV1 556 624 -98 749 131 3 0 chrX 56324146 56324265 -120649875 + LTR12 LTR ERV1 359 713 -1 310 192 31 115 chrX 56324265 56324347 -120649793 + L1MC4a LINE L1 5796 5865 -1943 1309 91 56 65 chrX 56324347 56324471 -120649669 + MER30 DNA MER1_type 1 125 -105 2184 99 3 3 chrX 56324471 56324783 -120649357 - AluSx SINE Alu 0 312 1 1309 91 56 65 chrX 56324783 56324889 -120649251 + MER30 DNA MER1_type 125 230 0 310 192 31 115 chrX 56324889 56324936 -120649204 + L1MC4a LINE L1 5865 5914 -1894 1369 163 85 50 chrX 56324939 56325221 -120648919 - AluJo SINE Alu -18 294 3 2210 72 25 4 chrX 56325623 56325900 -120648240 + AluSg SINE Alu 13 295 -15 23 0 0 0 chrX 56326027 56326050 -120648090 + GC_rich Low_complexity Low_complexity 1 23 0 2664 36 0 13 chrX 56326959 56327266 -120646874 + AluY SINE Alu 1 303 -8 374 314 13 6 chrX 56327558 56327717 -120646423 + L2 LINE L2 247 406 -2908 817 61 0 0 chrX 56327756 56327855 -120646285 + HY3 scRNA scRNA 1 99 -2 234 0 0 0 chrX 56327855 56327878 -120646262 + (CAA)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chrX 56327878 56327904 -120646236 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2060 103 43 0 chrX 56327917 56328199 -120645941 + AluSx SINE Alu 11 304 -8 759 107 0 8 chrX 56328202 56328323 -120645817 - L1 LINE L1 -1293 4853 4734 1065 41 0 0 chrX 56328369 56328492 -120645648 + AluY SINE Alu 172 294 -17 747 165 67 85 chrX 56328566 56328790 -120645350 - MLT1A2 LTR MaLR 0 374 155 26 0 0 0 chrX 56328816 56328842 -120645298 + AT_rich Low_complexity Low_complexity 1 26 0 203 250 0 0 chrX 56328848 56328892 -120645248 + GA-rich Low_complexity Low_complexity 3 46 0 544 219 109 7 chrX 56328910 56329047 -120645093 - MLT1A2 LTR MaLR -214 151 1 2314 101 3 0 chrX 56329231 56329529 -120644611 - AluSp SINE Alu -14 299 1 4158 223 65 56 chrX 56329674 56329829 -120644311 + L1MEc LINE L1 36 188 -6208 2465 94 0 0 chrX 56329829 56330138 -120644002 - AluSx SINE Alu -2 310 2 4158 223 65 56 chrX 56330138 56330411 -120643729 + L1MEc LINE L1 188 457 -5939 2154 90 0 4 chrX 56330411 56330688 -120643452 + AluSg SINE Alu 31 306 -4 4158 223 65 56 chrX 56330688 56331301 -120642839 + L1MEc LINE L1 457 1095 -5301 2371 95 3 0 chrX 56331301 56331606 -120642534 + AluSq SINE Alu 1 306 -7 4158 223 65 56 chrX 56331606 56331909 -120642231 + L1MEc LINE L1 1095 1394 -5002 810 235 187 0 chrX 56331920 56332273 -120641867 + L1MEc LINE L1 3155 3573 -2642 1540 140 55 31 chrX 56332274 56332566 -120641574 + AluJo SINE Alu 1 299 -13 1252 159 59 38 chrX 56332574 56332813 -120641327 + AluJb SINE Alu 1 244 -68 841 146 0 0 chrX 56332812 56332975 -120641165 + AluSg/x SINE Alu 163 310 0 * 2415 164 10 29 chrX 56332975 56333611 -120640529 + L1M3 LINE L1 5049 5672 -508 590 189 25 8 chrX 56333613 56333735 -120640405 + L1MD2 LINE L1 6223 6346 -13 1330 282 80 31 chrX 56333735 56334246 -120639894 - MLT1E LTR MaLR -51 542 7 2342 98 3 0 chrX 56334292 56334587 -120639553 + AluSx SINE Alu 1 296 -16 835 189 0 0 chrX 56334754 56334897 -120639243 + FLAM_C SINE Alu 1 143 0 743 147 145 11 chrX 56334903 56335069 -120639071 + L1MD2 LINE L1 6164 7808 0 216 0 0 0 chrX 56335119 56335143 -120638997 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 369 0 0 0 chrX 56335142 56335183 -120638957 + (GA)n Simple_repeat Simple_repeat 2 42 0 289 100 0 0 chrX 56335259 56335299 -120638841 + Tigger1 DNA MER2_type 429 468 -1950 1013 143 77 0 chrX 56335310 56335478 -120638662 - AluJb SINE Alu -3 309 129 4712 102 46 17 chrX 56335499 56335636 -120638504 + Tigger1 DNA MER2_type 1702 1834 -584 1688 144 33 59 chrX 56335636 56335942 -120638198 + AluJo SINE Alu 1 298 -14 4712 102 46 17 chrX 56335942 56336501 -120637639 + Tigger1 DNA MER2_type 1834 2418 0 646 268 83 94 chrX 56336768 56337023 -120637117 + MLT1L LTR MaLR 239 595 -20 195 360 54 14 chrX 56337023 56337067 -120637073 + L2 LINE L2 2706 2747 -567 2450 82 0 0 chrX 56337067 56337373 -120636767 + AluY SINE Alu 1 306 -5 195 360 54 14 chrX 56337373 56337475 -120636665 + L2 LINE L2 2747 2858 -456 2398 67 0 0 chrX 56337644 56337927 -120636213 - AluSq SINE Alu -30 283 1 422 214 20 0 chrX 56337941 56338039 -120636101 + L2 LINE L2 2545 2644 -670 * 1116 205 141 38 chrX 56338032 56338373 -120635767 + L2 LINE L2 2934 3309 -4 350 211 14 0 chrX 56338433 56338504 -120635636 + L2 LINE L2 3200 3271 -1 941 133 87 13 chrX 56338527 56338677 -120635463 - AluJo/FRAM SINE Alu -17 295 135 2027 148 7 0 chrX 56338678 56338981 -120635159 - AluJo SINE Alu -7 305 1 1027 259 37 68 chrX 56339188 56339323 -120634817 - L1ME3A LINE L1 -79 6091 5953 2151 148 0 0 chrX 56339323 56339634 -120634506 - AluSx SINE Alu -1 311 1 1027 259 37 68 chrX 56339634 56339981 -120634159 - L1ME3A LINE L1 -217 5953 5624 867 60 0 0 chrX 56339989 56340089 -120634051 + AluS SINE Alu 1 100 -213 249 224 41 10 chrX 56340089 56340187 -120633953 - L1ME3A LINE L1 -774 5388 5288 627 176 8 69 chrX 56340227 56340358 -120633782 - FLAM_C SINE Alu -19 124 2 871 157 7 21 chrX 56340373 56340541 -120633599 - FRAM SINE Alu 0 173 8 1945 98 0 8 chrX 56340559 56340813 -120633327 - AluSq SINE Alu -20 293 42 1148 244 62 107 chrX 56340834 56340914 -120633226 - L1ME3A LINE L1 -893 5253 5171 2115 138 0 0 chrX 56340914 56341212 -120632928 - AluSx SINE Alu -14 298 1 1148 244 62 107 chrX 56341212 56341331 -120632809 - L1ME3A LINE L1 -975 5171 5048 1756 164 3 35 chrX 56341331 56341641 -120632499 + AluJo SINE Alu 5 304 -8 1148 244 62 107 chrX 56341641 56341685 -120632455 - L1ME3A LINE L1 -1098 5048 5004 2212 125 0 0 chrX 56341685 56341980 -120632160 + AluSx SINE Alu 1 295 -17 1148 244 62 107 chrX 56341980 56342281 -120631859 - L1ME3A LINE L1 -1142 5004 4691 1892 149 0 24 chrX 56342281 56342570 -120631570 - AluJo SINE Alu -30 282 1 1148 244 62 107 chrX 56342570 56342761 -120631379 - L1ME3A LINE L1 -1455 4691 4559 2837 111 34 5 chrX 56342761 56343175 -120630965 - MSTB LTR MaLR 0 426 1 1148 244 62 107 chrX 56343175 56343311 -120630829 - L1ME3A LINE L1 -1587 4559 4418 2501 81 0 3 chrX 56343311 56343619 -120630521 - AluSg SINE Alu -2 308 2 378 258 129 31 chrX 56343679 56343966 -120630174 + L2 LINE L2 2176 2490 -824 * 1092 307 54 9 chrX 56343938 56344384 -120629756 + L2 LINE L2 2848 3313 0 207 326 79 79 chrX 56344425 56344729 -120629411 + L2 LINE L2 2503 2806 -508 2030 130 17 0 chrX 56344768 56345060 -120629080 - AluSq SINE Alu -16 297 1 213 39 0 0 chrX 56345200 56345226 -120628914 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1022 186 27 95 chrX 56345238 56345534 -120628606 - AluJo SINE Alu -36 276 1 218 303 74 16 chrX 56345538 56345660 -120628480 + L2 LINE L2 2926 3054 -218 248 193 128 83 chrX 56346042 56346151 -120627989 + HAL1 LINE L1 2367 2480 -27 2142 95 11 3 chrX 56346165 56346473 -120627667 - AluSx SINE Alu 0 310 1 327 349 74 0 chrX 56346487 56346676 -120627464 + L1ME LINE L1 5601 5803 -318 848 130 52 58 chrX 56346676 56346830 -120627310 + AluJ SINE Alu 44 196 -116 1285 90 0 0 chrX 56346830 56346996 -120627144 + MER51A LTR ERV1 15 180 -454 * 2538 91 3 8 chrX 56346992 56347343 -120626797 + MER51A LTR ERV1 286 634 0 777 143 0 0 chrX 56347343 56347462 -120626678 + AluJ SINE Alu 185 303 -9 243 0 0 0 chrX 56347550 56347577 -120626563 + (TG)n Simple_repeat Simple_repeat 2 28 0 2292 87 0 17 chrX 56347590 56347888 -120626252 - AluSc SINE Alu -16 293 1 1342 182 91 4 chrX 56347899 56348045 -120626095 - AluJo SINE Alu -25 287 155 313 58 39 0 chrX 56348045 56348097 -120626043 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1342 182 91 4 chrX 56348097 56348214 -120625926 - AluJo SINE Alu -157 155 1 1328 117 0 5 chrX 56348251 56348439 -120625701 + AluSx SINE Alu 5 191 -121 364 68 0 0 chrX 56348439 56348483 -120625657 + AluY SINE Alu 57 100 -201 188 182 23 0 chrX 56348485 56348529 -120625611 + (TA)n Simple_repeat Simple_repeat 1 45 0 27 49 0 0 chrX 56348671 56348712 -120625428 + AT_rich Low_complexity Low_complexity 1 41 0 303 281 51 36 chrX 56348719 56348915 -120625225 - L1ME4a LINE L1 -46 6075 5877 2235 100 3 0 chrX 56348923 56349236 -120624904 + AluSp SINE Alu 1 313 0 1284 165 9 17 chrX 56349282 56349512 -120624628 - AluJo SINE Alu -84 228 1 1754 121 55 12 chrX 56349646 56349903 -120624237 - AluJo SINE Alu -44 268 1 249 33 0 0 chrX 56349907 56349937 -120624203 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1606 168 19 0 chrX 56349939 56350201 -120623939 - AluJb SINE Alu -33 279 13 2529 57 3 0 chrX 56350221 56350518 -120623622 - AluSg SINE Alu -12 298 1 829 240 29 29 chrX 56350520 56350653 -120623487 - L1ME4a LINE L1 -383 5738 5603 2071 128 20 3 chrX 56350653 56350950 -120623190 - AluJb SINE Alu -10 302 1 829 240 29 29 chrX 56350950 56351058 -120623082 - L1ME4a LINE L1 -517 5604 5497 454 258 89 40 chrX 56351082 56351259 -120622881 + MIR SINE MIR 14 206 -56 389 145 40 0 chrX 56351259 56351335 -120622805 + MER116 DNA Mariner 2 80 0 454 258 89 40 chrX 56351335 56351382 -120622758 + MIR SINE MIR 206 249 -13 518 207 0 0 chrX 56351517 56351604 -120622536 + 7SLRNA srpRNA srpRNA 1 87 -233 1874 44 9 9 chrX 56351605 56351834 -120622306 + SVA Other Other 1158 1386 0 2035 124 35 3 chrX 56352130 56352246 -120621894 + AluSx SINE Alu 1 112 -200 2125 82 0 0 chrX 56352246 56352503 -120621637 + AluSq SINE Alu 1 257 -56 2035 124 35 3 chrX 56352503 56352676 -120621464 + AluSx SINE Alu 112 299 -13 25 31 0 0 chrX 56352921 56352953 -120621187 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chrX 56353418 56353440 -120620700 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 394 280 82 106 chrX 56353444 56353812 -120620328 + L2 LINE L2 2904 3262 -10 209 313 125 0 chrX 56353822 56353918 -120620222 - L2 LINE L2 -8 3264 3157 21 0 0 0 chrX 56354055 56354076 -120620064 + AT_rich Low_complexity Low_complexity 1 21 0 2333 95 0 3 chrX 56354205 56354501 -120619639 - AluSx SINE Alu -17 295 1 205 152 0 0 chrX 56354985 56355018 -120619122 + CT-rich Low_complexity Low_complexity 2 34 0 305 352 72 0 chrX 56355401 56355594 -120618546 + L2 LINE L2 2493 2699 -615 1263 241 82 74 chrX 56355639 56356349 -120617791 - L1ME4a LINE L1 -11 6110 5392 2304 72 14 0 chrX 56356349 56356628 -120617512 - AluSc SINE Alu -26 283 1 1263 241 82 74 chrX 56356628 56356712 -120617428 - L1ME4a LINE L1 -729 5392 5310 214 310 82 82 chrX 56356869 56357185 -120616955 + L2 LINE L2 2871 3186 -86 769 271 48 99 chrX 56357605 56358041 -120616099 + L2 LINE L2 2854 3267 -5 2009 139 13 20 chrX 56358665 56358967 -120615173 - AluJo SINE Alu -12 300 1 48 0 0 0 chrX 56360170 56360218 -120613922 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chrX 56360477 56360497 -120613643 + (CACCAT)n Simple_repeat Simple_repeat 5 24 0 622 269 106 0 chrX 56361138 56361346 -120612794 + MIR SINE MIR 6 235 -27 251 257 144 59 chrX 56361494 56361681 -120612459 + L1ME4a LINE L1 5917 6119 -2 2462 62 26 0 chrX 56361956 56362261 -120611879 + AluSp SINE Alu 1 313 0 318 240 224 8 chrX 56363213 56363338 -120610802 - MIR SINE MIR -65 197 46 363 225 230 27 chrX 56364217 56364404 -120609736 - L2 LINE L2 -50 3263 3039 1043 180 28 47 chrX 56364450 56364661 -120609479 - AluJb SINE Alu -19 293 87 495 251 63 26 chrX 56364902 56365093 -120609047 - L1MC5 LINE L1 -50 7911 7714 733 124 0 0 chrX 56365093 56365198 -120608942 - AluSq/x SINE Alu -203 109 5 1406 131 46 67 chrX 56365218 56365387 -120608753 + L1MC1 LINE L1 6039 6201 -132 1263 138 185 50 chrX 56365387 56365647 -120608493 - AluJo SINE Alu -7 295 1 1406 131 46 67 chrX 56365647 56365760 -120608380 + L1MC1 LINE L1 6201 6315 -18 10681 28 2 156 chrX 56365807 56367444 -120606696 + SVA Other Other 1 1386 0 526 210 102 34 chrX 56367448 56367653 -120606487 - L1MC5 LINE L1 -246 7715 7497 362 233 0 35 chrX 56367743 56367829 -120606311 + L1ME3A LINE L1 6083 6165 -5 1119 210 43 31 chrX 56367829 56368086 -120606054 + MER102b DNA MER1_type 82 341 0 244 356 118 7 chrX 56368127 56368262 -120605878 - L2 LINE L2 0 3272 3123 2255 118 0 0 chrX 56368421 56368717 -120605423 + AluSx SINE Alu 1 296 -16 2087 147 3 0 chrX 56368852 56369159 -120604981 + AluJb SINE Alu 1 308 -4 2474 81 3 28 chrX 56369500 56369634 -120604506 + AluSp SINE Alu 1 137 -176 2359 64 40 0 chrX 56369634 56369932 -120604208 + AluSp SINE Alu 1 310 -3 2474 81 3 28 chrX 56369932 56370118 -120604022 + AluSp SINE Alu 137 313 0 2113 113 24 3 chrX 56371211 56371503 -120602637 - AluSx SINE Alu -14 298 1 21 36 0 0 chrX 56372484 56372512 -120601628 + AT_rich Low_complexity Low_complexity 1 28 0 251 348 11 0 chrX 56372558 56372650 -120601490 + L1MC/D LINE L1 5495 5587 -2221 2108 125 14 0 chrX 56372713 56373008 -120601132 + AluSx SINE Alu 1 299 -13 490 216 109 28 chrX 56373038 56373353 -120600787 + L1MC4a LINE L1 4478 4749 -1397 * 1046 211 54 29 chrX 56373346 56373605 -120600535 + L1M4 LINE L1 4822 5090 -1056 1793 127 8 19 chrX 56373605 56373872 -120600268 - AluSx SINE Alu -10 302 39 1046 211 54 29 chrX 56373872 56373891 -120600249 + L1M4 LINE L1 5090 5107 -1039 2020 75 75 11 chrX 56373896 56374176 -120599964 + AluY SINE Alu 1 298 -13 1240 196 14 5 chrX 56374268 56374487 -120599653 - AluJb SINE Alu -91 221 1 506 222 6 31 chrX 56374489 56374616 -120599524 + L1M4 LINE L1 5176 5305 -841 2201 120 0 0 chrX 56374616 56374908 -120599232 + AluSx SINE Alu 1 292 -20 1768 141 32 11 chrX 56374912 56375217 -120598923 + AluSx SINE Alu 1 311 0 506 222 6 31 chrX 56375217 56375245 -120598895 + L1M4 LINE L1 5308 5333 -813 9899 50 7 1 chrX 56375245 56377230 -120596910 + L1PA6 LINE L1 4137 6128 -26 1552 127 27 4 chrX 56377234 56377493 -120596647 + L1MA5A LINE L1 6030 6294 -3 22 35 0 0 chrX 56377531 56377560 -120596580 + AT_rich Low_complexity Low_complexity 1 29 0 248 114 63 25 chrX 56377665 56377744 -120596396 + L1MD2 LINE L1 5290 5371 -799 1457 130 0 0 chrX 56377759 56377959 -120596181 + AluSx SINE Alu 37 236 -76 230 151 38 19 chrX 56377959 56378012 -120596128 + GA-rich Low_complexity Low_complexity 2 55 0 503 146 92 199 chrX 56378016 56378277 -120595863 + L1MD2 LINE L1 5353 5585 -657 400 146 0 164 chrX 56378279 56378389 -120595751 + U13 snRNA snRNA 1 92 -12 2579 219 87 25 chrX 56378424 56379151 -120594989 + L1MD2 LINE L1 5573 6344 -15 304 160 20 0 chrX 56379234 56379284 -120594856 - MER66B LTR ERV1 -141 345 295 245 313 102 83 chrX 56379893 56379946 -120594194 - L2 LINE L2 -1226 2088 2037 1652 93 31 43 chrX 56379946 56380203 -120593937 - AluSx SINE Alu -18 294 41 245 313 102 83 chrX 56380203 56380458 -120593682 - L2 LINE L2 -1277 2037 1769 2009 116 34 58 chrX 56380458 56380787 -120593353 + L1MB4 LINE L1 5812 6132 -48 2368 96 0 3 chrX 56380787 56381089 -120593051 + AluSx SINE Alu 1 301 -11 2009 116 34 58 chrX 56381089 56381137 -120593003 + L1MB4 LINE L1 6132 6180 0 245 313 102 83 chrX 56381137 56381211 -120592929 - L2 LINE L2 -1545 1769 1698 550 133 0 0 chrX 56381248 56381331 -120592809 - AluS SINE Alu -3 307 225 1158 101 0 0 chrX 56381348 56381497 -120592643 - AluSq/x SINE Alu -164 149 1 21 57 0 0 chrX 56381775 56381810 -120592330 + AT_rich Low_complexity Low_complexity 1 35 0 282 295 124 47 chrX 56381839 56382277 -120591863 + L1M4 LINE L1 4388 4902 -1244 2130 131 0 16 chrX 56382277 56382414 -120591726 + AluJb SINE Alu 1 139 -173 2482 61 17 0 chrX 56382414 56382709 -120591431 + AluY SINE Alu 1 300 -11 2130 131 0 16 chrX 56382709 56382885 -120591255 + AluJb SINE Alu 139 309 -3 282 295 124 47 chrX 56382885 56383145 -120590995 + L1M4 LINE L1 4902 5140 -1006 492 255 61 31 chrX 56383194 56383390 -120590750 + L1MEc LINE L1 23 224 -6172 474 280 93 30 chrX 56383409 56383645 -120590495 + L1MEc LINE L1 279 529 -5867 243 244 0 0 chrX 56383918 56383959 -120590181 - 5S rRNA rRNA -79 42 2 824 206 39 0 chrX 56384682 56384837 -120589303 - AluJo SINE Alu -151 161 1 1005 238 82 29 chrX 56385195 56385510 -120588630 + MER102b DNA MER1_type 1 332 -9 275 335 107 24 chrX 56385552 56385842 -120588298 + L2 LINE L2 611 924 -2390 2311 101 0 3 chrX 56386991 56387289 -120586851 - AluSc SINE Alu -12 297 1 1675 165 8 0 chrX 56387561 56387827 -120586313 + AluSx SINE Alu 1 268 -44 683 86 0 0 chrX 56387827 56387920 -120586220 + AluSg/x SINE Alu 216 308 -1 401 235 144 32 chrX 56387921 56388108 -120586032 + L2 LINE L2 2262 2469 -845 417 229 137 30 chrX 56388243 56388374 -120585766 + MER102a DNA MER1_type 183 327 -3 501 264 66 83 chrX 56388460 56388518 -120585622 - L1MC/D LINE L1 -1952 5833 5776 2536 52 0 13 chrX 56388518 56388825 -120585315 - AluY SINE Alu -8 303 1 501 264 66 83 chrX 56388825 56389043 -120585097 - L1MC/D LINE L1 -2009 5776 5524 222 394 37 21 chrX 56389045 56389286 -120584854 + L2 LINE L2 2451 2695 -619 217 263 18 0 chrX 56389576 56389633 -120584507 + L2 LINE L2 3001 3058 -214 2598 48 0 0 chrX 56389639 56389930 -120584210 - AluY SINE Alu -20 291 1 628 223 130 46 chrX 56389948 56390316 -120583824 - L1ME4a LINE L1 -47 6074 5676 613 256 68 16 chrX 56390342 56390533 -120583607 - MIR SINE MIR -49 213 13 465 290 55 56 chrX 56390548 56390654 -120583486 - L1ME4a LINE L1 -535 5586 5481 1965 86 4 4 chrX 56390654 56390911 -120583229 + AluSg SINE Alu 45 301 -9 465 290 55 56 chrX 56390911 56390963 -120583177 - L1ME4a LINE L1 -640 5481 5430 2136 139 0 0 chrX 56390963 56391266 -120582874 - AluSx SINE Alu -9 303 1 465 290 55 56 chrX 56391266 56391429 -120582711 - L1ME4a LINE L1 -691 5430 5262 2318 90 3 0 chrX 56392190 56392489 -120581651 - AluSp SINE Alu -13 300 1 313 280 23 45 chrX 56392489 56392621 -120581519 + L2 LINE L2 2895 3023 -249 809 126 0 44 chrX 56392639 56392774 -120581366 + FLAM_C SINE Alu 5 133 0 891 145 0 0 chrX 56392814 56392945 -120581195 - FLAM_C SINE Alu -2 131 1 1651 158 7 42 chrX 56393261 56393571 -120580569 - AluJo SINE Alu -11 301 3 281 247 86 11 chrX 56393591 56393684 -120580456 + L2 LINE L2 3136 3235 -37 2379 98 0 7 chrX 56393998 56394305 -120579835 + AluSq SINE Alu 1 305 -8 817 122 107 15 chrX 56394376 56394507 -120579633 + FLAM_C SINE Alu 1 143 0 431 132 15 0 chrX 56394537 56394605 -120579535 + AluJ/FRAM SINE Alu 223 291 -21 2461 77 0 13 chrX 56395882 56396193 -120577947 + AluY SINE Alu 2 308 -3 1925 119 26 33 chrX 56396298 56396600 -120577540 + AluSx SINE Alu 1 300 -12 845 199 66 7 chrX 56396880 56397085 -120577055 - L1P5 LINE L1 -627 5527 5306 316 290 99 15 chrX 56397292 56397423 -120576717 + MIR3 SINE MIR 49 190 -18 283 315 0 0 chrX 56398841 56398933 -120575207 + A-rich Low_complexity Low_complexity 1 92 0 202 239 0 0 chrX 56399520 56399566 -120574574 + T-rich Low_complexity Low_complexity 1 46 0 2516 75 7 0 chrX 56399856 56400161 -120573979 + AluSp SINE Alu 1 307 -6 226 271 188 0 chrX 56400422 56400507 -120573633 - L2 LINE L2 -1 3271 3171 1915 160 7 10 chrX 56400526 56400832 -120573308 + AluJo SINE Alu 1 305 -7 435 158 92 0 chrX 56401121 56401197 -120572943 - Tigger5 DNA MER2_type 0 2323 2241 1867 153 3 26 chrX 56401259 56401567 -120572573 + AluJo SINE Alu 1 301 -11 2072 151 31 3 chrX 56401567 56401886 -120572254 - MSTC LTR MaLR -72 356 29 756 113 0 113 chrX 56401886 56402036 -120572104 - FLAM_C SINE Alu 0 133 1 2040 140 7 7 chrX 56402512 56402819 -120571321 - AluJo SINE Alu -5 307 1 201 320 27 0 chrX 56403394 56403469 -120570671 - MIR SINE MIR -8 254 178 2263 120 10 0 chrX 56403486 56403794 -120570346 + AluSx SINE Alu 1 311 -1 222 250 145 0 chrX 56403799 56403875 -120570265 - MIR SINE MIR -161 101 15 2253 125 0 3 chrX 56403875 56404186 -120569954 - AluSx SINE Alu -2 310 1 188 285 115 15 chrX 56405229 56405359 -120568781 - L2 LINE L2 -1001 2313 2171 1827 165 8 97 chrX 56405405 56405730 -120568410 + L1MD3 LINE L1 5317 5669 -485 1077 181 53 18 chrX 56405730 56405957 -120568183 - MER46A DNA MER2_type 0 236 2 1827 165 8 97 chrX 56405957 56406048 -120568092 + L1MD3 LINE L1 5669 5767 -387 1908 127 7 3 chrX 56406048 56406331 -120567809 + AluY SINE Alu 12 295 -16 1827 165 8 97 chrX 56406331 56406494 -120567646 + L1MD3 LINE L1 5767 5607 -547 2001 154 0 13 chrX 56406494 56406800 -120567340 + AluJo SINE Alu 1 302 -10 1827 165 8 97 chrX 56406800 56406848 -120567292 + L1MD3 LINE L1 5606 5657 -497 2166 85 7 11 chrX 56406864 56407167 -120566973 + AluSp SINE Alu 1 302 0 333 155 0 0 chrX 56407176 56407234 -120566906 + L1MB8 LINE L1 6119 6176 -2 229 239 0 75 chrX 56407350 56407417 -120566723 + MIR SINE MIR 1 62 -200 834 141 0 0 chrX 56407420 56407548 -120566592 - AluSg/x SINE Alu -6 306 179 1833 145 7 21 chrX 56407549 56407838 -120566302 + AluSx SINE Alu 9 293 -19 2164 125 0 0 chrX 56407840 56408135 -120566005 + AluSx SINE Alu 1 295 -17 2519 78 0 0 chrX 56408166 56408475 -120565665 + AluY SINE Alu 1 309 -2 719 60 90 0 chrX 56408505 56408605 -120565535 - L1PA10 LINE L1 -2 6166 6058 21 0 0 0 chrX 56408609 56408630 -120565510 + AT_rich Low_complexity Low_complexity 1 21 0 222 309 25 0 chrX 56408630 56408711 -120565429 + MIR SINE MIR 97 179 -83 2326 98 0 0 chrX 56408732 56409029 -120565111 + AluSg SINE Alu 1 297 -13 448 222 48 41 chrX 56409235 56409394 -120564746 - MIR SINE MIR -28 180 19 229 150 0 16 chrX 56409494 56409728 -120564412 + AluJo SINE Alu 1 302 -1 2302 66 42 3 chrX 56409893 56410179 -120563961 - AluY SINE Alu -14 297 1 2066 94 31 11 chrX 56410316 56410602 -120563538 + AluSg SINE Alu 1 292 -18 2240 130 0 0 chrX 56411407 56411708 -120562432 + AluSx SINE Alu 3 303 -9 2304 105 10 0 chrX 56411711 56412006 -120562134 + AluSx SINE Alu 2 299 -13 240 307 102 0 chrX 56412483 56412571 -120561569 + MIR3 SINE MIR 93 189 -19 2291 108 10 0 chrX 56412571 56412876 -120561264 - AluSq SINE Alu -5 308 1 897 119 0 0 chrX 56413080 56413198 -120560942 - FLAM_C SINE Alu -15 118 1 1946 126 0 0 chrX 56413272 56413533 -120560607 + AluSx SINE Alu 1 261 -51 346 287 72 72 chrX 56413535 56413664 -120560476 + L1MC4a LINE L1 6165 6293 -1515 2505 72 0 7 chrX 56413664 56413970 -120560170 + AluSx SINE Alu 1 304 -8 346 287 72 72 chrX 56413970 56414283 -120559857 + L1MC4a LINE L1 6292 6607 -1201 1947 119 54 0 chrX 56414285 56414563 -120559577 + AluSx SINE Alu 1 293 -19 1608 251 196 56 chrX 56414563 56414650 -120559490 + L1MC4 LINE L1 6810 6884 -1158 2251 104 0 0 chrX 56414650 56414947 -120559193 + AluSg SINE Alu 1 297 -13 1608 251 196 56 chrX 56414947 56415593 -120558547 + L1MC4 LINE L1 6884 7439 -603 1914 183 0 0 chrX 56415593 56415905 -120558235 + AluJb SINE Alu 1 312 0 1608 251 196 56 chrX 56415905 56416252 -120557888 + L1MC4 LINE L1 7439 8042 0 867 118 71 0 chrX 56416383 56416510 -120557630 + AluSq/x SINE Alu 1 136 -176 1950 102 42 18 chrX 56416510 56416793 -120557347 + AluSx SINE Alu 1 290 -22 183 256 26 0 chrX 56416855 56416894 -120557246 - L2 LINE L2 -23 3249 3210 * 239 256 147 23 chrX 56416864 56416993 -120557147 - MIR SINE MIR -27 235 91 512 153 3 0 chrX 56417472 56417557 -120556583 + MER8 DNA MER2_type 2 76 -163 404 125 0 0 chrX 56417596 56417652 -120556488 - Tigger2 DNA MER2_type -2662 56 1 187 82 99 0 chrX 56418025 56418061 -120556079 + MIR SINE MIR 114 151 -111 269 283 208 6 chrX 56418169 56418342 -120555798 - MIR SINE MIR -50 212 5 2005 158 0 3 chrX 56418531 56418841 -120555299 + AluSx SINE Alu 1 309 -3 2391 78 0 0 chrX 56418890 56419183 -120554957 + AluSq SINE Alu 1 293 -20 1138 158 0 0 chrX 56419183 56419360 -120554780 + AluSg/x SINE Alu 132 308 -2 2289 116 0 3 chrX 56419365 56419676 -120554464 + AluSg SINE Alu 1 310 0 2173 111 0 0 chrX 56419681 56419970 -120554170 + AluJb SINE Alu 1 289 -23 2538 66 0 0 chrX 56420561 56420863 -120553277 - AluSg SINE Alu -8 302 1 1937 157 3 3 chrX 56421138 56421432 -120552708 + AluSx SINE Alu 1 294 -18 1761 139 30 13 chrX 56421868 56422169 -120551971 - AluJb SINE Alu -6 306 1 1706 155 24 14 chrX 56422329 56422625 -120551515 + AluJo SINE Alu 1 299 -13 527 276 104 12 chrX 56422701 56422758 -120551382 - MER5A DNA MER1_type -6 183 133 2007 115 31 0 chrX 56422758 56423045 -120551095 - AluSx SINE Alu -16 296 1 527 276 104 12 chrX 56423045 56423150 -120550990 - MER5A DNA MER1_type -56 133 6 192 350 73 46 chrX 56423277 56423409 -120550731 + L2 LINE L2 2236 2363 -951 1831 132 15 0 chrX 56423409 56423682 -120550458 - AluJb SINE Alu -23 289 13 192 350 73 46 chrX 56423682 56423809 -120550331 + L2 LINE L2 2363 2502 -812 1178 104 77 6 chrX 56423924 56424106 -120550034 + AluJb SINE Alu 1 195 -117 1157 148 0 0 chrX 56424110 56424292 -120549848 + AluJb SINE Alu 122 303 -9 390 100 0 0 chrX 56425636 56425696 -120548444 + (CA)n Simple_repeat Simple_repeat 1 60 0 2078 114 7 0 chrX 56426994 56427291 -120546849 + AluSx SINE Alu 1 299 -13 26 0 0 0 chrX 56427361 56427387 -120546753 + AT_rich Low_complexity Low_complexity 1 26 0 832 167 0 0 chrX 56427387 56427519 -120546621 - FLAM_C SINE Alu -1 132 1 1596 182 10 33 chrX 56427789 56427901 -120546239 + AluJo SINE Alu 1 114 -198 2206 95 3 0 chrX 56427901 56428207 -120545933 - AluSq SINE Alu -6 307 1 1596 182 10 33 chrX 56428207 56428396 -120545744 + AluJo SINE Alu 114 295 -17 188 335 159 40 chrX 56428467 56428694 -120545446 - L2 LINE L2 -213 3059 2806 1878 121 6 43 chrX 56428746 56429068 -120545072 + AluSx SINE Alu 2 311 -1 242 180 98 0 chrX 56429135 56429196 -120544944 + L1MA10 LINE L1 6261 6327 -7 1967 119 0 14 chrX 56430814 56430971 -120543169 - AluSx SINE Alu -23 289 136 2403 64 3 0 chrX 56430971 56431269 -120542871 - AluSp SINE Alu -14 299 1 1967 119 0 14 chrX 56431269 56431404 -120542736 - AluSx SINE Alu -176 136 1 334 289 47 72 chrX 56431849 56432030 -120542110 + MIR SINE MIR 5 189 -67 1839 154 0 0 chrX 56432157 56432450 -120541690 + AluJb SINE Alu 2 294 -18 2369 63 3 3 chrX 56432743 56433042 -120541098 - AluSp SINE Alu -14 299 1 22 56 0 0 chrX 56433550 56433586 -120540554 + AT_rich Low_complexity Low_complexity 1 36 0 1090 116 159 19 chrX 56434055 56434214 -120539926 - MER46A DNA MER2_type -2495 236 40 2077 113 7 0 chrX 56434214 56434506 -120539634 + AluSc SINE Alu 1 294 -15 1090 116 159 19 chrX 56434506 56434553 -120539587 - MER46A DNA MER2_type -2691 40 1 243 261 105 51 chrX 56435079 56435117 -120539023 - L1MC5 LINE L1 -11 8031 7996 1972 142 32 18 chrX 56435117 56435456 -120538684 - MER2 DNA MER2_type 0 344 1 243 261 105 51 chrX 56435456 56435729 -120538411 - L1MC5 LINE L1 -46 7996 7625 2069 128 0 0 chrX 56437362 56437659 -120536481 + AluSp SINE Alu 7 303 -10 311 218 64 0 chrX 56437671 56437749 -120536391 + L1ME4a LINE L1 5690 5772 -349 1979 117 14 3 chrX 56437932 56438222 -120535918 + AluSx SINE Alu 3 295 -17 651 176 50 8 chrX 56438359 56438478 -120535662 + FLAM_A SINE Alu 1 124 -9 23 0 0 0 chrX 56438478 56438501 -120535639 + AT_rich Low_complexity Low_complexity 1 23 0 813 156 7 22 chrX 56438568 56438703 -120535437 + AluJo SINE Alu 2 134 -178 233 230 342 11 chrX 56438724 56438911 -120535229 + L1ME4a LINE L1 5873 6121 0 2091 105 3 10 chrX 56439019 56439323 -120534817 + AluSp SINE Alu 1 302 -11 21 0 0 0 chrX 56439415 56439436 -120534704 + AT_rich Low_complexity Low_complexity 1 21 0 2248 97 3 0 chrX 56439505 56439814 -120534326 + AluSp SINE Alu 1 310 -3 1934 129 13 3 chrX 56442230 56442532 -120531608 - AluSx SINE Alu -7 305 1 184 245 20 0 chrX 56442735 56442784 -120531356 + L3b LINE CR1 1323 1372 -211 840 117 0 4 chrX 56443071 56443276 -120530864 + AluSx SINE Alu 2 287 -23 391 292 25 33 chrX 56443295 56443415 -120530725 + MER5B DNA MER1_type 60 178 0 1969 90 34 0 chrX 56443828 56444094 -120530046 - AluSg SINE Alu -14 296 22 1545 162 75 0 chrX 56444173 56444439 -120529701 + AluJb SINE Alu 1 286 -26 1930 116 40 3 chrX 56444545 56444846 -120529294 + AluSx SINE Alu 1 312 0 334 114 0 0 chrX 56444934 56444978 -120529162 + Alu SINE Alu 1 44 -255 1954 124 0 0 chrX 56445462 56445752 -120528388 + AluSx SINE Alu 11 300 -12 2263 84 0 0 chrX 56445754 56446053 -120528087 + AluY SINE Alu 1 299 -12 204 296 173 0 chrX 56446074 56446155 -120527985 - MIR SINE MIR -16 246 152 940 121 0 7 chrX 56446267 56446408 -120527732 - FRAM SINE Alu -17 159 20 2205 114 0 0 chrX 56446461 56446769 -120527371 - AluSq SINE Alu -5 308 1 318 240 107 166 chrX 56446978 56447249 -120526891 - MIR SINE MIR -6 256 2 1925 117 0 11 chrX 56448269 56448552 -120525588 + AluSx SINE Alu 1 280 -32 1695 157 0 0 chrX 56448689 56448975 -120525165 - AluSq SINE Alu -26 287 2 2405 61 0 26 chrX 56449006 56449317 -120524823 + AluY SINE Alu 1 303 -8 873 142 0 20 chrX 56449621 56449769 -120524371 + AluSq/x SINE Alu 1 145 -168 2193 83 0 7 chrX 56449769 56450069 -120524071 + AluY SINE Alu 1 298 -13 1633 95 16 8 chrX 56450086 56450328 -120523812 - AluSp SINE Alu -13 300 57 1997 125 0 0 chrX 56450947 56451243 -120522897 + AluSx SINE Alu 1 296 -16 187 109 0 65 chrX 56452687 56452733 -120521407 + (AGGGGG)n Simple_repeat Simple_repeat 3 45 0 1346 151 49 4 chrX 56453147 56453392 -120520748 + AluJo SINE Alu 1 256 -56 704 152 9 0 chrX 56453675 56453787 -120520353 - FLAM_C SINE Alu -30 113 1 290 258 144 23 chrX 56453883 56454015 -120520125 - L1MC4 LINE L1 -370 7672 7525 2224 85 3 7 chrX 56454025 56454332 -120519808 - AluY SINE Alu -5 306 1 456 93 0 27 chrX 56454332 56454407 -120519733 - AluSg SINE Alu -9 300 228 918 91 63 7 chrX 56454407 56454550 -120519590 - AluSg SINE Alu -159 151 1 451 256 71 48 chrX 56454572 56454740 -120519400 - L1MC4a LINE L1 -466 7342 7171 342 260 19 19 chrX 56454785 56454889 -120519251 - L1MC4 LINE L1 -774 7268 7165 1841 108 80 0 chrX 56454890 56455176 -120518964 - AluSx SINE Alu -3 309 1 2142 97 3 7 chrX 56455217 56455515 -120518625 + AluSx SINE Alu 4 300 -12 869 118 0 8 chrX 56455634 56455761 -120518379 - FLAM_C SINE Alu -12 131 6 24 32 0 0 chrX 56455874 56455905 -120518235 + AT_rich Low_complexity Low_complexity 1 31 0 2111 103 0 3 chrX 56455905 56456195 -120517945 + AluSx SINE Alu 1 289 -23 808 139 47 16 chrX 56456323 56456452 -120517688 - FLAM_C SINE Alu 0 133 1 31 0 0 0 chrX 56456514 56456545 -120517595 + AT_rich Low_complexity Low_complexity 1 31 0 1828 95 73 4 chrX 56456545 56456818 -120517322 + AluSq SINE Alu 1 292 -21 2046 117 0 7 chrX 56456832 56457123 -120517017 + AluSx SINE Alu 1 289 -23 2552 178 53 25 chrX 56457123 56457358 -120516782 + L1MB8 LINE L1 5587 5814 -364 929 214 6 0 chrX 56457358 56457531 -120516609 + FAM SINE Alu 2 175 0 2552 178 53 25 chrX 56457531 56457862 -120516278 + L1MB8 LINE L1 5814 6169 -9 250 193 0 53 chrX 56458021 56458078 -120516062 + L2 LINE L2 3250 3303 -10 2146 94 7 0 chrX 56458078 56458376 -120515764 + AluSx SINE Alu 1 300 -12 1877 100 14 25 chrX 56458376 56458576 -120515564 + HSMAR2 DNA Mariner 108 306 -996 2144 118 0 0 chrX 56458576 56458882 -120515258 + AluSx SINE Alu 1 306 -6 1877 100 14 25 chrX 56458882 56458961 -120515179 + HSMAR2 DNA Mariner 306 384 -918 1983 110 10 39 chrX 56458997 56459305 -120514835 - AluSx SINE Alu -13 299 1 1658 141 29 4 chrX 56459306 56459582 -120514558 - AluJb SINE Alu -29 283 1 696 133 9 9 chrX 56459582 56459695 -120514445 + HSMAR2 DNA Mariner 1096 1208 -94 2141 95 7 0 chrX 56459695 56459978 -120514162 + AluSx SINE Alu 1 285 -27 933 118 0 14 chrX 56459995 56460139 -120514001 + MER4A-int LTR ERV1 6456 6597 -1 2305 73 0 7 chrX 56460141 56460461 -120513679 + AluY SINE Alu 1 311 0 619 124 21 10 chrX 56460470 56460567 -120513573 + MER4A LTR ERV1 1 98 -566 1838 137 9 25 chrX 56460567 56460918 -120513222 + MER4A LTR ERV1 261 664 0 285 75 0 0 chrX 56461002 56461042 -120513098 + (A)n Simple_repeat Simple_repeat 1 40 0 635 108 36 188 chrX 56461189 56461412 -120512728 + MER53 DNA DNA 1 189 0 2460 41 0 0 chrX 56461704 56461997 -120512143 - AluY SINE Alu -18 293 1 2136 111 0 0 chrX 56462104 56462402 -120511738 + AluSx SINE Alu 1 298 -14 755 127 0 37 chrX 56462666 56462800 -120511340 - FLAM_A SINE Alu -1 132 4 2260 88 0 0 chrX 56463171 56463468 -120510672 + AluSg1 SINE Alu 1 297 -12 1574 181 7 0 chrX 56463598 56463902 -120510238 - AluJb SINE Alu 0 307 2 2022 82 14 7 chrX 56464151 56464465 -120509675 - AluY SINE Alu 0 316 1 1806 139 3 32 chrX 56464491 56464800 -120509340 + AluJb SINE Alu 1 300 -12 2038 114 0 26 chrX 56464849 56465155 -120508985 + AluSx SINE Alu 1 298 -14 2248 79 0 7 chrX 56465157 56465476 -120508664 + AluSq SINE Alu 1 317 0 540 0 0 0 chrX 56465676 56465736 -120508404 + (CA)n Simple_repeat Simple_repeat 2 61 0 2132 125 0 3 chrX 56467149 56467460 -120506680 + AluSx SINE Alu 1 310 -2 249 250 145 0 chrX 56467460 56467536 -120506604 + MIR SINE MIR 15 101 -161 2127 121 10 0 chrX 56467542 56467849 -120506291 - AluSx SINE Alu -2 310 1 234 320 27 0 chrX 56467866 56467941 -120506199 + MIR SINE MIR 178 254 -8 2027 140 7 7 chrX 56468516 56468816 -120505324 + AluJo SINE Alu 1 300 -12 766 92 0 0 chrX 56469293 56469391 -120504749 + AluS SINE Alu 2 99 -214 443 18 0 18 chrX 56469425 56469482 -120504658 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 919 75 94 6 chrX 56469631 56469791 -120504349 + MER30 DNA MER1_type 1 174 -56 2350 79 0 54 chrX 56470963 56471280 -120502860 + AluSq SINE Alu 5 304 -9 1904 126 63 0 chrX 56471280 56471566 -120502574 + AluSq SINE Alu 1 304 -9 21 36 0 0 chrX 56471566 56471594 -120502546 + AT_rich Low_complexity Low_complexity 1 28 0 800 105 0 77 chrX 56471612 56471755 -120502385 + FLAM_A SINE Alu 2 133 0 230 236 42 0 chrX 56471778 56471850 -120502290 - L1ME2 LINE L1 -183 5981 5907 * 326 90 194 15 chrX 56471846 56471913 -120502227 - L1MB7 LINE L1 -11 6173 6095 53 17 0 0 chrX 56471915 56471975 -120502165 + AT_rich Low_complexity Low_complexity 1 60 0 1782 147 40 0 chrX 56471975 56472248 -120501892 - AluJb SINE Alu -3 309 26 2273 99 0 0 chrX 56472270 56472586 -120501554 - AluSx SINE Alu 0 316 1 772 178 44 0 chrX 56472587 56472722 -120501418 - AluJo SINE Alu -170 142 2 1001 224 106 6 chrX 56472725 56473046 -120501094 - L1MEc LINE L1 -4074 2322 1966 2251 109 7 0 chrX 56473046 56473340 -120500800 + AluSx SINE Alu 1 296 -16 713 213 0 8 chrX 56473362 56473484 -120500656 + AluJb SINE Alu 2 122 -190 703 155 54 23 chrX 56473484 56473613 -120500527 - L1MC1 LINE L1 -5 6328 6196 2263 119 0 3 chrX 56473650 56473953 -120500187 + AluSx SINE Alu 1 302 -10 2373 72 7 0 chrX 56473958 56474249 -120499891 + AluSp SINE Alu 1 293 -20 2367 60 0 3 chrX 56474252 56474535 -120499605 + AluY SINE Alu 1 282 -29 189 94 0 0 chrX 56474537 56474569 -120499571 + (TTAAA)n Simple_repeat Simple_repeat 3 34 0 2374 111 11 3 chrX 56474581 56474950 -120499190 - L1MC1 LINE L1 -148 6185 5814 1494 224 18 33 chrX 56475020 56475286 -120498854 + L1M4 LINE L1 826 1094 -5448 2540 82 0 0 chrX 56475286 56475591 -120498549 + AluSg SINE Alu 1 305 -5 1494 224 18 33 chrX 56475591 56475688 -120498452 + L1M4 LINE L1 1094 1191 -5351 2548 44 24 0 chrX 56475688 56475982 -120498158 - AluY SINE Alu -10 301 1 1494 224 18 33 chrX 56475982 56476284 -120497856 + L1M4 LINE L1 1191 1569 -4973 225 0 0 0 chrX 56476297 56476322 -120497818 + (TCTCCC)n Simple_repeat Simple_repeat 5 29 0 5965 80 22 22 chrX 56476330 56477196 -120496944 + SVA Other Other 1 866 -520 1463 106 0 35 chrX 56477311 56477533 -120496607 + AluSg/x SINE Alu 92 306 0 1160 166 0 0 chrX 56477536 56477705 -120496435 + AluJo/FRAM SINE Alu 129 297 -15 426 234 48 8 chrX 56477705 56477829 -120496311 - LTR67 LTR ERVL -77 480 352 338 337 235 4 chrX 56478054 56478297 -120495843 - L2 LINE L2 -888 2426 2128 1854 209 83 57 chrX 56478300 56478353 -120495787 - LTR68 LTR ERV1 -4 736 686 2503 79 3 0 chrX 56478353 56478657 -120495483 + AluSp SINE Alu 4 308 -5 1854 209 83 57 chrX 56478657 56479181 -120494959 - LTR68 LTR ERV1 -54 686 144 2006 155 3 0 chrX 56479262 56479558 -120494582 + AluSx SINE Alu 1 297 -15 2415 97 0 3 chrX 56479561 56479872 -120494268 + AluY SINE Alu 1 310 -1 231 0 0 0 chrX 56479939 56479966 -120494174 + LTR40a LTR ERVL 493 519 0 676 304 88 69 chrX 56479967 56480061 -120494079 - L2 LINE L2 -1178 2136 2045 2285 98 0 10 chrX 56480061 56480356 -120493784 + AluSx SINE Alu 1 292 -20 676 304 88 69 chrX 56480356 56480866 -120493274 - L2 LINE L2 -1269 2045 1521 968 158 12 36 chrX 56481128 56481293 -120492847 + AluJo SINE Alu 1 161 -151 241 235 0 0 chrX 56481293 56481344 -120492796 + LTR30 LTR ERV1 2 52 -670 1591 86 103 52 chrX 56481345 56481701 -120492439 + LTR12 LTR ERV1 57 285 -429 380 200 11 0 chrX 56481702 56481792 -120492348 + LTR30 LTR ERV1 553 643 -79 663 103 55 24 chrX 56481792 56481928 -120492212 + LTR12 LTR ERV1 301 714 0 * 6281 109 10 30 chrX 56481928 56482728 -120491412 + HERV9 LTR ERV1 65 845 -7554 2275 93 7 3 chrX 56482728 56483028 -120491112 - AluSq SINE Alu -12 301 1 6281 109 10 30 chrX 56483028 56483182 -120490958 + HERV9 LTR ERV1 845 1000 -7399 * 27571 83 8 8 chrX 56483181 56483259 -120490881 + HERV9 LTR ERV1 1165 1242 -7157 182 37 37 0 chrX 56483259 56483286 -120490854 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 27571 83 8 8 chrX 56483286 56487002 -120487138 + HERV9 LTR ERV1 1241 4959 -3440 369 206 0 0 chrX 56487002 56487104 -120487036 + GA-rich Low_complexity Low_complexity 1 102 0 2193 197 96 63 chrX 56487107 56487953 -120486187 + Harlequin LTR ERV1 867 1740 -5156 * 5545 84 9 8 chrX 56487951 56488724 -120485416 + Harlequin LTR ERV1 7626 8399 0 250 231 0 0 chrX 56488724 56488776 -120485364 + LTR30 LTR ERV1 1 52 -670 1186 59 267 0 chrX 56488776 56488963 -120485177 + LTR12 LTR ERV1 53 289 -425 344 174 0 0 chrX 56488963 56489032 -120485108 + LTR30 LTR ERV1 556 624 -98 718 131 3 0 chrX 56489032 56489151 -120484989 + LTR12 LTR ERV1 359 713 -1 288 223 15 100 chrX 56489151 56489233 -120484907 + L1MC4a LINE L1 5796 5865 -1943 1313 91 56 65 chrX 56489233 56489357 -120484783 + MER30 DNA MER1_type 1 125 -105 2194 99 3 3 chrX 56489357 56489669 -120484471 - AluSx SINE Alu 0 312 1 1313 91 56 65 chrX 56489669 56489775 -120484365 + MER30 DNA MER1_type 125 230 0 288 223 15 100 chrX 56489775 56489822 -120484318 + L1MC4a LINE L1 5865 5914 -1894 1395 163 85 50 chrX 56489825 56490107 -120484033 - AluJo SINE Alu -18 294 3 2222 81 24 14 chrX 56490509 56490804 -120483336 + AluSg SINE Alu 13 310 0 23 0 0 0 chrX 56490913 56490936 -120483204 + GC_rich Low_complexity Low_complexity 1 23 0 2669 36 0 13 chrX 56491845 56492152 -120481988 + AluY SINE Alu 1 303 -8 432 333 17 6 chrX 56492426 56492603 -120481537 + L2 LINE L2 228 406 -2908 818 61 0 0 chrX 56492642 56492741 -120481399 + HY3 scRNA scRNA 1 99 -2 234 0 0 0 chrX 56492741 56492764 -120481376 + (CAA)n Simple_repeat Simple_repeat 1 49 0 234 0 0 0 chrX 56492764 56492790 -120481350 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2086 103 43 0 chrX 56492803 56493085 -120481055 + AluSx SINE Alu 11 304 -8 722 107 0 8 chrX 56493088 56493209 -120480931 - L1 LINE L1 -1293 4853 4734 1075 62 0 0 chrX 56493249 56493378 -120480762 + AluY SINE Alu 166 294 -17 684 179 58 76 chrX 56493452 56493676 -120480464 - MLT1A2 LTR MaLR 0 374 155 26 0 0 0 chrX 56493702 56493728 -120480412 + AT_rich Low_complexity Low_complexity 1 26 0 6715 62 46 22 chrX 56493887 56494813 -120479327 + SVA Other Other 438 1386 0 306 247 43 32 chrX 56494842 56494877 -120479263 - L1MC4 LINE L1 -1341 6701 6668 2386 96 0 3 chrX 56494877 56495180 -120478960 + AluSg SINE Alu 1 302 -8 306 247 43 32 chrX 56495180 56495237 -120478903 - L1MC4 LINE L1 -1374 6668 6608 735 194 47 9 chrX 56495271 56495297 -120478843 + L1M4c LINE L1 1300 1324 -5059 1912 166 0 7 chrX 56495297 56495448 -120478692 - AluJo SINE Alu -25 287 137 2371 95 0 32 chrX 56495448 56495764 -120478376 - AluSq SINE Alu -7 306 1 1912 166 0 7 chrX 56495764 56495901 -120478239 - AluJo SINE Alu -175 137 1 735 194 47 9 chrX 56495901 56496058 -120478082 + L1M4c LINE L1 1324 1863 -4520 771 119 8 32 chrX 56496060 56496186 -120477954 - FLAM_C SINE Alu -9 134 12 1110 239 36 10 chrX 56496198 56496348 -120477792 + L1M4c LINE L1 2190 2335 -4047 2604 68 0 0 chrX 56496348 56496658 -120477482 + AluY SINE Alu 1 310 -1 1110 239 36 10 chrX 56496658 56496997 -120477143 + L1M4c LINE L1 2335 2695 -3687 2567 143 37 14 chrX 56496997 56497430 -120476710 - MSTB2 LTR MaLR 0 457 15 4748 205 71 86 chrX 56497433 56497998 -120476142 + L1M4c LINE L1 2691 3263 -3119 2040 118 7 20 chrX 56497998 56498295 -120475845 + AluSx SINE Alu 1 293 -19 4748 205 71 86 chrX 56498295 56498345 -120475795 + L1M4c LINE L1 3263 3312 -3070 578 184 0 26 chrX 56498345 56498459 -120475681 + FLAM_C SINE Alu 33 143 0 4748 205 71 86 chrX 56498459 56498583 -120475557 + L1M4c LINE L1 3312 3436 -2946 3473 147 24 65 chrX 56498583 56499304 -120474836 + LTR8 LTR ERV1 1 691 0 4748 205 71 86 chrX 56499304 56499325 -120474815 + L1M4c LINE L1 3436 3456 -2926 2031 143 3 3 chrX 56499325 56499625 -120474515 + AluSx SINE Alu 1 300 -12 4748 205 71 86 chrX 56499625 56499881 -120474259 + L1M4c LINE L1 3456 3714 -2668 2455 71 0 3 chrX 56499881 56500176 -120473964 - AluY SINE Alu -17 294 1 2231 107 3 3 chrX 56500176 56500474 -120473666 - AluSg SINE Alu -12 298 1 4748 205 71 86 chrX 56500474 56501000 -120473140 + L1M4c LINE L1 3713 4245 -2137 2355 94 7 0 chrX 56501000 56501299 -120472841 - AluSp SINE Alu -12 301 1 4748 205 71 86 chrX 56501299 56501663 -120472477 + L1M4c LINE L1 4245 4808 -1574 262 86 0 0 chrX 56501687 56501722 -120472418 + AluSx SINE Alu 3 37 -265 243 214 169 85 chrX 56502183 56502224 -120471916 - HAL1 LINE L1 -302 2205 2169 2161 85 0 4 chrX 56502224 56502495 -120471645 + AluSx SINE Alu 29 298 -14 2272 86 3 13 chrX 56502499 56502823 -120471317 + AluY SINE Alu 1 321 0 243 214 169 85 chrX 56502823 56502976 -120471164 - HAL1 LINE L1 -340 2167 1988 2617 53 0 0 chrX 56503019 56503323 -120470817 - AluY SINE Alu -7 304 1 28 29 0 0 chrX 56503462 56503497 -120470643 + AT_rich Low_complexity Low_complexity 1 35 0 799 293 149 30 chrX 56503497 56503914 -120470226 - L2 LINE L2 -1212 2102 1593 2467 70 30 0 chrX 56503914 56504212 -120469928 + AluSq SINE Alu 1 307 -6 799 293 149 30 chrX 56504212 56504385 -120469755 - L2 LINE L2 -1721 1593 1442 342 200 25 25 chrX 56504389 56504469 -120469671 + MIR SINE MIR 179 258 -4 2209 122 0 0 chrX 56504579 56504874 -120469266 - AluSx SINE Alu -17 295 1 2468 79 0 19 chrX 56504931 56505246 -120468894 - AluY SINE Alu -2 309 1 1040 126 0 0 chrX 56505358 56505493 -120468647 + AluSq/x SINE Alu 1 135 -178 1864 170 3 22 chrX 56505493 56505811 -120468329 + AluJb SINE Alu 1 312 0 2111 110 7 3 chrX 56505871 56506153 -120467987 + AluSq SINE Alu 1 283 -30 639 26 0 0 chrX 56506153 56506230 -120467910 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 2087 144 7 3 chrX 56506240 56506545 -120467595 + AluJb SINE Alu 1 306 -6 2003 149 17 3 chrX 56506547 56506848 -120467292 + AluSx SINE Alu 1 305 -7 2538 113 20 74 chrX 56507249 56507452 -120466688 + Tigger2a DNA MER2_type 1 214 -2494 1699 174 11 11 chrX 56507452 56507756 -120466384 - AluJb SINE Alu 0 304 1 2584 51 0 26 chrX 56507764 56508076 -120466064 - AluY SINE Alu -7 304 1 2538 113 20 74 chrX 56508076 56508250 -120465890 + Tigger2a DNA MER2_type 221 403 -2305 2380 94 0 3 chrX 56508250 56508557 -120465583 + AluSg SINE Alu 1 306 -4 2538 113 20 74 chrX 56508557 56508571 -120465569 + Tigger2a DNA MER2_type 403 416 -2292 1987 141 0 17 chrX 56508571 56508891 -120465249 + AluSx SINE Alu 1 312 0 2538 113 20 74 chrX 56508891 56508945 -120465195 + Tigger2a DNA MER2_type 416 434 0 1504 166 9 68 chrX 56508954 56509163 -120464977 + L1M4 LINE L1 4832 5052 -1094 2304 95 0 7 chrX 56509163 56509459 -120464681 - AluSq SINE Alu -19 294 1 1504 166 9 68 chrX 56509459 56509487 -120464653 + L1M4 LINE L1 5052 5080 -1066 2472 84 3 0 chrX 56509487 56509797 -120464343 + AluY SINE Alu 1 311 0 1504 166 9 68 chrX 56509797 56509895 -120464245 + L1M4 LINE L1 5080 5148 -998 1233 90 60 0 chrX 56509895 56510061 -120464079 + AluSg/x SINE Alu 131 306 -6 204 384 27 27 chrX 56510189 56510335 -120463805 + L2 LINE L2 3116 3261 -11 350 320 13 13 chrX 56510954 56511107 -120463033 + GA-rich Low_complexity Low_complexity 3 155 0 662 115 8 72 chrX 56515206 56515431 -120458709 + AluSg1 SINE Alu 2 309 0 1321 94 0 0 chrX 56516047 56516217 -120457923 + AluSq SINE Alu 144 313 0 970 121 0 0 chrX 56516504 56516636 -120457504 + AluSq/x SINE Alu 1 132 -180 2130 78 0 0 chrX 56516636 56516893 -120457247 + AluSq SINE Alu 39 295 -18 1759 97 126 11 chrX 56519408 56519677 -120454463 + AluSg SINE Alu 1 300 0 2170 115 0 0 chrX 56520019 56520307 -120453833 - AluSg SINE Alu -20 290 3 2006 60 0 8 chrX 56520323 56520572 -120453568 - AluY SINE Alu -20 291 45 1943 112 17 37 chrX 56520579 56520875 -120453265 - AluSc SINE Alu -10 299 10 2266 98 7 3 chrX 56520887 56521184 -120452956 - AluSx SINE Alu -14 298 1 2094 124 3 0 chrX 56521890 56522189 -120451951 + AluY SINE Alu 1 300 -11 2233 120 0 7 chrX 56522220 56522521 -120451619 - AluSx SINE Alu -13 299 1 202 240 60 0 chrX 56522598 56522648 -120451492 - MIR SINE MIR -59 149 97 355 121 0 0 chrX 56522797 56522855 -120451285 + L1MB2 LINE L1 6108 6165 -6 760 239 25 6 chrX 56522856 56523015 -120451125 - FRAM SINE Alu -19 157 1 596 207 9 17 chrX 56523049 56523165 -120450975 + FLAM_A SINE Alu 2 116 -17 538 229 42 7 chrX 56523172 56523316 -120450824 + L1MC5 LINE L1 7783 7931 -30 2293 108 0 0 chrX 56523322 56523618 -120450522 + AluSq SINE Alu 1 296 -17 219 88 0 0 chrX 56525076 56525110 -120449030 + (CTG)n Simple_repeat Simple_repeat 1 34 0 225 191 0 0 chrX 56525424 56525471 -120448669 + A-rich Low_complexity Low_complexity 1 47 0 1580 131 0 9 chrX 56525471 56525693 -120448447 + AluJo SINE Alu 1 220 -92 1069 171 21 68 chrX 56525693 56525754 -120448386 + AluJo SINE Alu 86 148 -164 2060 123 17 0 chrX 56525754 56526054 -120448086 + AluSg SINE Alu 1 305 -5 1069 171 21 68 chrX 56526054 56526226 -120447914 + AluJo SINE Alu 148 308 -4 2455 86 0 13 chrX 56526229 56526542 -120447598 + AluY SINE Alu 1 309 -2 24 0 0 0 chrX 56526542 56526566 -120447574 + AT_rich Low_complexity Low_complexity 1 24 0 393 284 156 23 chrX 56526854 56527072 -120447068 + MIR SINE MIR 11 257 -5 2022 125 52 0 chrX 56527128 56527417 -120446723 + AluSp SINE Alu 1 304 -9 1595 146 115 28 chrX 56527419 56527706 -120446434 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 56527788 56527812 -120446328 + AT_rich Low_complexity Low_complexity 1 24 0 1605 160 3 72 chrX 56527819 56528137 -120446003 + AluJo SINE Alu 7 302 -10 2099 122 0 10 chrX 56528139 56528433 -120445707 + AluSx SINE Alu 1 291 -21 2092 131 3 0 chrX 56528439 56528730 -120445410 + AluSq SINE Alu 1 292 -21 459 292 52 34 chrX 56528932 56529165 -120444975 + L1ME LINE L1 5588 5824 -297 651 248 172 23 chrX 56529318 56529580 -120444560 - L2 LINE L2 -5 3308 3008 27 0 0 0 chrX 56529648 56529675 -120444465 + AT_rich Low_complexity Low_complexity 1 27 0 421 214 209 0 chrX 56529705 56529925 -120444215 - L1ME4a LINE L1 -27 6094 5829 279 242 141 20 chrX 56529948 56530047 -120444093 - L1ME4a LINE L1 -351 5770 5660 430 246 87 27 chrX 56530167 56530350 -120443790 - L1ME LINE L1 -299 5822 5629 357 182 8 3 chrX 56531199 56531346 -120442794 + MER53 DNA DNA 1 189 0 308 276 6 52 chrX 56532409 56532583 -120441557 + GA-rich Low_complexity Low_complexity 3 168 0 636 198 63 0 chrX 56533245 56533371 -120440769 + MER3 DNA MER1_type 5 138 -71 1820 165 7 19 chrX 56533373 56533682 -120440458 + AluJb SINE Alu 1 305 -7 2379 58 7 14 chrX 56533750 56534042 -120440098 + AluY SINE Alu 1 290 -21 1557 194 24 7 chrX 56534118 56534411 -120439729 - AluJb SINE Alu -12 300 3 1074 90 6 39 chrX 56534422 56534578 -120439562 - AluSg/x SINE Alu -21 291 141 2317 85 3 0 chrX 56534591 56534884 -120439256 - AluSx SINE Alu -18 294 1 1844 160 10 3 chrX 56535187 56535480 -120438660 - AluJb SINE Alu -14 298 4 366 289 56 14 chrX 56535574 56535716 -120438424 - L2 LINE L2 -433 2881 2734 456 174 160 17 chrX 56535733 56535893 -120438247 - HAL1b LINE L1 -3 6118 1169 279 93 0 0 chrX 56535893 56535936 -120438204 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1925 175 96 31 chrX 56536026 56536472 -120437668 - MLT1D LTR MaLR 0 505 31 1084 332 36 41 chrX 56536487 56537023 -120437117 - L2 LINE L2 -634 2680 2146 2487 57 7 3 chrX 56537023 56537320 -120436820 + AluY SINE Alu 1 298 -13 1084 332 36 41 chrX 56537320 56537413 -120436727 - L2 LINE L2 -1168 2146 2054 2196 89 3 71 chrX 56537426 56537750 -120436390 - AluSg SINE Alu -8 302 1 1252 105 0 50 chrX 56537750 56537931 -120436209 - AluSg/x SINE Alu -8 304 133 213 65 0 0 chrX 56537931 56537962 -120436178 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2368 78 0 0 chrX 56537962 56538243 -120435897 - AluSg SINE Alu -29 281 1 4020 191 79 66 chrX 56538441 56538870 -120435270 + L1MB8 LINE L1 4103 4525 -1653 1484 106 9 53 chrX 56538870 56539096 -120435044 - AluSg/x SINE Alu -10 300 85 1905 100 24 4 chrX 56539098 56539347 -120434793 + AluSq SINE Alu 46 299 -14 4020 191 79 66 chrX 56539347 56539687 -120434453 + L1MB8 LINE L1 4525 4859 -1319 1520 73 0 0 chrX 56539687 56539864 -120434276 - AluSx SINE Alu -133 179 3 4020 191 79 66 chrX 56539864 56540179 -120433961 + L1MB8 LINE L1 4859 5168 -1010 2380 89 3 0 chrX 56540179 56540472 -120433668 + AluSx SINE Alu 3 296 -16 4020 191 79 66 chrX 56540472 56541137 -120433003 + L1MB8 LINE L1 5168 5995 -183 25 0 0 0 chrX 56541153 56541178 -120432962 + AT_rich Low_complexity Low_complexity 1 25 0 600 186 66 0 chrX 56541233 56541388 -120432752 + L1MB7 LINE L1 5952 6123 -57 2297 108 7 0 chrX 56541389 56541694 -120432446 - AluSg SINE Alu -3 307 1 22 56 0 0 chrX 56541694 56541730 -120432410 + AT_rich Low_complexity Low_complexity 1 36 0 2073 101 10 49 chrX 56541745 56542053 -120432087 - AluSg SINE Alu -14 296 1 2007 133 14 0 chrX 56542056 56542342 -120431798 - AluSx SINE Alu -22 290 1 2376 86 0 29 chrX 56542342 56542656 -120431484 - AluY SINE Alu -5 306 1 1585 96 4 96 chrX 56542727 56542988 -120431152 - AluSg/x SINE Alu -6 306 70 639 182 13 38 chrX 56542988 56543147 -120430993 - LTR7 LTR ERV1 0 450 296 823 116 7 14 chrX 56543390 56543528 -120430612 - LTR7 LTR ERV1 -313 137 1 3715 109 4 9 chrX 56543528 56544088 -120430052 - HERVH LTR ERV1 0 7713 7157 * 7297 122 10 14 chrX 56544081 56544237 -120429903 - HERVH LTR ERV1 -1697 6016 5861 2504 70 0 7 chrX 56544237 56544536 -120429604 + AluY SINE Alu 1 297 -14 7297 122 10 14 chrX 56544536 56545548 -120428592 - HERVH LTR ERV1 -1852 5861 4853 1588 165 31 54 chrX 56545548 56546088 -120428052 + SVA Other Other 432 850 -536 6649 116 1 58 chrX 56546209 56547339 -120426801 - HERVH LTR ERV1 -2848 4865 3800 * 17122 135 20 22 chrX 56547327 56548635 -120425505 - HERVH LTR ERV1 -4126 3587 2278 2430 74 0 3 chrX 56548635 56548932 -120425208 + AluY SINE Alu 1 296 -15 17122 135 20 22 chrX 56548932 56550893 -120423247 - HERVH LTR ERV1 -5435 2278 1 650 181 6 38 chrX 56550893 56551053 -120423087 - LTR7 LTR ERV1 0 450 296 845 122 0 14 chrX 56551301 56551440 -120422700 - LTR7 LTR ERV1 -313 137 1 1119 175 25 10 chrX 56551440 56551640 -120422500 - AluJo SINE Alu -103 209 7 401 127 0 0 chrX 56551645 56551708 -120422432 + L1MB8 LINE L1 6111 6173 -5 2100 130 0 22 chrX 56552017 56552194 -120421946 - AluSx SINE Alu -3 309 141 2492 72 3 3 chrX 56552194 56552499 -120421641 - AluY SINE Alu -4 307 3 2100 130 0 22 chrX 56552499 56552637 -120421503 - AluSx SINE Alu -171 141 1 2143 123 3 3 chrX 56552688 56552990 -120421150 + AluSp SINE Alu 1 302 -11 2331 99 3 0 chrX 56553012 56553315 -120420825 + AluSx SINE Alu 5 308 -4 1225 181 158 23 chrX 56553320 56553575 -120420565 + AluJb SINE Alu 1 295 -7 2188 122 0 22 chrX 56553575 56553894 -120420246 + AluSx SINE Alu 1 312 0 2025 116 14 14 chrX 56554163 56554457 -120419683 + AluSg SINE Alu 1 294 -16 297 190 23 0 chrX 56554475 56554549 -120419591 + L1ME4a LINE L1 5746 5826 -295 444 240 76 18 chrX 56554583 56554644 -120419496 + L1ME4a LINE L1 5941 5997 -124 2253 112 0 19 chrX 56554644 56554956 -120419184 + AluSx SINE Alu 1 306 -6 444 240 76 18 chrX 56554956 56555065 -120419075 + L1ME4a LINE L1 5997 6121 0 2394 90 7 3 chrX 56555113 56555414 -120418726 - AluSq SINE Alu -11 302 1 2474 94 0 0 chrX 56555501 56555808 -120418332 + AluSc SINE Alu 1 307 -2 2137 150 0 0 chrX 56556126 56556439 -120417701 + AluSq SINE Alu 1 313 0 304 279 318 6 chrX 56556439 56556618 -120417522 - MIR SINE MIR -8 254 20 2513 75 3 0 chrX 56556653 56556958 -120417182 + AluY SINE Alu 1 306 -5 954 89 0 0 chrX 56556968 56557091 -120417049 + AluSp/q SINE Alu 188 310 -3 27 0 0 0 chrX 56557096 56557123 -120417017 + AT_rich Low_complexity Low_complexity 1 27 0 1201 137 127 5 chrX 56557123 56557320 -120416820 - AluJb SINE Alu -24 288 68 849 101 101 7 chrX 56557320 56557458 -120416682 - AluSq/x SINE Alu -161 151 1 319 131 48 107 chrX 56557482 56557538 -120416602 - L1ME4a LINE L1 -2 6119 6068 2154 102 7 23 chrX 56557538 56557842 -120416298 + AluSx SINE Alu 1 299 -13 319 131 48 107 chrX 56557842 56557869 -120416271 - L1ME4a LINE L1 -53 6068 6041 1667 157 91 3 chrX 56557871 56558157 -120415983 - AluSx SINE Alu -1 311 1 30 0 0 61 chrX 56558157 56558187 -120415953 + AT_rich Low_complexity Low_complexity 1 30 -16 2418 50 4 0 chrX 56558187 56558494 -120415646 + AluY SINE Alu 1 308 0 30 0 0 61 chrX 56558494 56558511 -120415629 + AT_rich Low_complexity Low_complexity 30 46 0 819 108 50 0 chrX 56558513 56558633 -120415507 - AluSg/x SINE Alu -30 280 155 1115 160 50 0 chrX 56558651 56558870 -120415270 - L1MC1 LINE L1 -11 6322 6093 1661 161 12 22 chrX 56558875 56559198 -120414942 - L1MC1 LINE L1 0 6333 6014 1722 145 6 44 chrX 56559220 56559538 -120414602 - AluJb SINE Alu -1 311 6 251 75 0 50 chrX 56559577 56559617 -120414523 - L1ME LINE L1 -352 5769 5732 394 275 51 22 chrX 56559617 56559755 -120414385 - MIR SINE MIR -113 149 8 867 128 11 11 chrX 56560554 56560733 -120413407 + GA-rich Low_complexity Low_complexity 2 180 0 306 125 0 0 chrX 56566959 56567007 -120407133 + (TC)n Simple_repeat Simple_repeat 2 49 0 216 0 0 0 chrX 56570666 56570690 -120403450 + (T)n Simple_repeat Simple_repeat 1 24 0 230 288 0 0 chrX 56571526 56571585 -120402555 + G-rich Low_complexity Low_complexity 1 59 0 825 124 8 0 chrX 56572067 56572188 -120401952 + FLAM_C SINE Alu 6 127 -16 192 77 0 0 chrX 56574673 56574699 -120399441 + (CCCCCA)n Simple_repeat Simple_repeat 2 27 0 246 95 0 0 chrX 56576327 56576369 -120397771 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1607 181 7 7 chrX 56576629 56576916 -120397224 + AluJb SINE Alu 1 287 -25 229 341 41 107 chrX 56577024 56577309 -120396831 - L2 LINE L2 -553 2761 2459 1843 116 14 14 chrX 56577309 56577604 -120396536 + AluSx SINE Alu 11 305 0 229 341 41 107 chrX 56577604 56577723 -120396417 - L2 LINE L2 -855 2459 2381 2396 76 0 0 chrX 56577723 56578026 -120396114 - AluSc SINE Alu -6 303 1 369 0 0 0 chrX 56578055 56578096 -120396044 + (TG)n Simple_repeat Simple_repeat 1 41 0 206 208 349 9 chrX 56578186 56578292 -120395848 + MIR3 SINE MIR 4 145 -63 430 309 144 13 chrX 56578387 56578623 -120395517 - L2 LINE L2 -1009 2305 2039 2158 109 0 0 chrX 56578879 56579202 -120394938 + AluSx SINE Alu 6 328 0 978 187 23 0 chrX 56579245 56579416 -120394724 + MER96 DNA MER1_type 1 175 0 1206 107 117 0 chrX 56579530 56579727 -120394413 + AluSg/x SINE Alu 77 296 -14 2155 116 0 3 chrX 56579727 56580037 -120394103 + AluSg SINE Alu 1 309 -1 654 186 6 18 chrX 56580037 56580204 -120393936 + GA-rich Low_complexity Low_complexity 1 165 0 355 163 24 187 chrX 56580466 56580533 -120393607 - MER81 DNA DNA 0 114 74 2423 70 0 3 chrX 56580533 56580845 -120393295 + AluY SINE Alu 1 311 0 355 163 24 187 chrX 56580845 56580900 -120393240 - MER81 DNA DNA -40 74 12 2013 101 0 14 chrX 56581106 56581506 -120392634 + AluSx SINE Alu 1 396 0 624 253 96 11 chrX 56581540 56581718 -120392422 + MIR SINE MIR 49 241 -21 2141 114 13 0 chrX 56582434 56582742 -120391398 - AluSx SINE Alu 0 312 1 510 244 149 46 chrX 56582742 56582972 -120391168 + MIR SINE MIR 6 246 -14 2170 88 3 7 chrX 56583087 56583384 -120390756 + AluSx SINE Alu 1 296 -16 1016 158 6 0 chrX 56583538 56583696 -120390444 + FRAM SINE Alu 1 159 -7 677 231 48 21 chrX 56583786 56583972 -120390168 - MIR SINE MIR 0 262 72 2207 84 10 3 chrX 56583981 56584277 -120389863 - AluSp SINE Alu -15 298 1 245 242 45 0 chrX 56584339 56584405 -120389735 - L3b LINE CR1 -278 1305 1237 535 161 34 0 chrX 56584867 56584975 -120389165 + CT-rich Low_complexity Low_complexity 3 117 -7 1978 155 0 0 chrX 56584975 56585284 -120388856 - AluSx SINE Alu -3 309 1 240 35 0 0 chrX 56585327 56585356 -120388784 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 1949 146 13 0 chrX 56585356 56585657 -120388483 - AluSx SINE Alu -7 305 1 594 169 100 77 chrX 56585664 56585683 -120388457 - FLAM_A SINE Alu -169 133 116 207 0 0 0 chrX 56585683 56585706 -120388434 + (TGG)n Simple_repeat Simple_repeat 3 25 0 594 169 100 77 chrX 56585706 56585816 -120388324 - FLAM_A SINE Alu -186 116 1 194 294 91 35 chrX 56585869 56586012 -120388128 - L2 LINE L2 -155 3117 2967 354 317 101 48 chrX 56586012 56586181 -120387959 + L2 LINE L2 2447 2637 -677 806 168 16 0 chrX 56586181 56586306 -120387834 - FLAM_A SINE Alu -6 127 1 354 317 101 48 chrX 56586306 56586404 -120387736 + L2 LINE L2 2637 2728 -586 2323 75 7 0 chrX 56586413 56586707 -120387433 - AluSx SINE Alu -16 296 1 2162 115 0 13 chrX 56586707 56587018 -120387122 - AluSx SINE Alu -4 308 1 362 286 101 48 chrX 56587792 56587960 -120386180 - MIR SINE MIR -70 192 16 2438 44 0 10 chrX 56588707 56589005 -120385135 + AluY SINE Alu 1 295 -16 504 205 0 0 chrX 56589005 56589088 -120385052 - AluJo/FLAM SINE Alu -194 118 36 327 104 0 0 chrX 56589094 56589142 -120384998 + (TCCC)n Simple_repeat Simple_repeat 1 48 0 1686 167 6 35 chrX 56589142 56589460 -120384680 - AluJo SINE Alu -3 309 1 293 338 169 0 chrX 56589799 56589953 -120384187 - MIR3 SINE MIR 0 208 29 364 232 155 19 chrX 56593003 56593158 -120380982 - MIR SINE MIR -20 242 67 22 0 0 0 chrX 56593256 56593278 -120380862 + AT_rich Low_complexity Low_complexity 1 22 0 1926 115 35 3 chrX 56593278 56593566 -120380574 + AluSx SINE Alu 1 297 -15 1638 152 0 25 chrX 56593678 56593955 -120380185 - AluJo SINE Alu -32 280 11 396 0 0 0 chrX 56594450 56594494 -120379646 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 2251 87 30 0 chrX 56594632 56594932 -120379208 + AluSc SINE Alu 1 309 0 1902 121 14 0 chrX 56595017 56595341 -120378799 + AluSg SINE Alu 1 328 0 858 92 7 64 chrX 56595346 56595487 -120378653 + FLAM_C SINE Alu 1 133 0 2120 46 0 11 chrX 56595587 56595850 -120378290 - AluY SINE Alu -51 260 1 1199 143 0 61 chrX 56595912 56596143 -120377997 + AluJo SINE Alu 42 258 -54 342 0 0 0 chrX 56596151 56596189 -120377951 + (TAA)n Simple_repeat Simple_repeat 2 39 0 823 248 75 5 chrX 56596217 56596431 -120377709 - MIR SINE MIR -2 260 32 2357 53 0 10 chrX 56596439 56596738 -120377402 - AluY SINE Alu -15 296 1 850 66 0 0 chrX 56596744 56596850 -120377290 - AluSg/x SINE Alu -16 296 191 2241 103 0 0 chrX 56597028 56597330 -120376810 - AluSx SINE Alu -10 302 1 498 270 88 31 chrX 56597933 56598092 -120376048 - MIR SINE MIR -70 192 25 357 24 0 0 chrX 56598193 56598235 -120375905 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 345 72 15 chrX 56598811 56599013 -120375127 - MIR SINE MIR -55 207 4 2422 60 3 0 chrX 56599169 56599467 -120374673 + AluSp SINE Alu 1 299 -14 923 102 31 0 chrX 56600534 56600661 -120373479 + FLAM_C SINE Alu 1 131 -12 2090 89 43 0 chrX 56601299 56601580 -120372560 - AluSx SINE Alu -19 293 1 485 313 55 15 chrX 56601658 56601962 -120372178 - L2 LINE L2 -177 3095 2774 834 294 37 12 chrX 56602074 56602319 -120371821 - MIR SINE MIR -7 255 5 202 216 0 0 chrX 56602860 56602897 -120371243 + GA-rich Low_complexity Low_complexity 2 38 0 2351 73 13 0 chrX 56602906 56603207 -120370933 + AluY SINE Alu 1 305 -6 1681 165 4 0 chrX 56603304 56603583 -120370557 - AluJb SINE Alu -13 299 20 2214 94 7 0 chrX 56603643 56603940 -120370200 + AluSp SINE Alu 3 301 -12 2341 77 0 0 chrX 56604847 56605145 -120368995 + AluSc SINE Alu 3 300 -9 933 182 0 18 chrX 56605199 56605369 -120368771 - AluJb SINE Alu -9 303 137 2041 115 30 0 chrX 56605372 56605668 -120368472 - AluSx SINE Alu -7 305 1 691 145 0 73 chrX 56605758 56605920 -120368220 - FLAM_C SINE Alu 0 153 1 1414 172 105 4 chrX 56605992 56606259 -120367881 - AluSx SINE Alu -7 305 12 534 152 0 0 chrX 56606259 56606351 -120367789 + T-rich Low_complexity Low_complexity 1 92 0 1812 168 3 16 chrX 56606361 56606671 -120367469 - AluJo SINE Alu -6 306 1 2239 94 3 0 chrX 56607230 56607527 -120366613 + AluSg SINE Alu 1 298 -12 465 19 0 0 chrX 56607632 56607686 -120366454 + (TG)n Simple_repeat Simple_repeat 1 54 0 1899 94 41 0 chrX 56607686 56607952 -120366188 - AluSg SINE Alu -33 277 1 1162 92 0 24 chrX 56607985 56608149 -120365991 + AluSq SINE Alu 1 160 -153 237 33 0 0 chrX 56608149 56608179 -120365961 + (TAA)n Simple_repeat Simple_repeat 1 30 0 2179 103 0 7 chrX 56608366 56608666 -120365474 - AluSx SINE Alu -14 298 1 1685 136 13 79 chrX 56608742 56608901 -120365239 - AluSx SINE Alu -17 295 166 2218 62 3 49 chrX 56608901 56609208 -120364932 - AluY SINE Alu -18 293 1 1685 136 13 79 chrX 56609208 56609364 -120364776 - AluSx SINE Alu -146 166 1 571 281 48 24 chrX 56609375 56609585 -120364555 + L2 LINE L2 1792 2006 -1308 2082 132 3 3 chrX 56609595 56609906 -120364234 - AluSx SINE Alu -1 311 1 476 256 44 44 chrX 56609932 56609945 -120364195 + L1PA3 LINE L1 5928 5940 -215 1178 119 99 10 chrX 56609945 56610147 -120363993 + L1PA13 LINE L1 5943 6162 -1 476 256 44 44 chrX 56610147 56610159 -120363981 + L1PA3 LINE L1 5939 6154 -1 2462 99 0 3 chrX 56610211 56610524 -120363616 + AluSx SINE Alu 1 312 0 2097 101 0 80 chrX 56610558 56610761 -120363379 + AluSx SINE Alu 3 172 -140 2353 93 30 0 chrX 56610761 56610881 -120363259 + AluY SINE Alu 1 116 -195 495 0 0 0 chrX 56610881 56610936 -120363204 + (CA)n Simple_repeat Simple_repeat 2 56 0 2353 93 30 0 chrX 56610936 56611117 -120363023 + AluY SINE Alu 116 311 0 2097 101 0 80 chrX 56611117 56611240 -120362900 + AluSx SINE Alu 172 303 -9 1999 158 16 3 chrX 56611272 56611576 -120362564 - AluJb SINE Alu -4 308 1 383 211 51 51 chrX 56611601 56611645 -120362495 - L1ME4a LINE L1 -174 5947 5904 2300 92 0 0 chrX 56611645 56611962 -120362178 - AluSx SINE Alu 0 317 1 383 211 51 51 chrX 56611962 56612072 -120362068 - L1ME4a LINE L1 -216 5905 5792 2044 73 0 48 chrX 56612073 56612346 -120361794 - AluSq SINE Alu -15 298 39 1023 123 65 0 chrX 56612356 56612511 -120361629 - FAM SINE Alu 0 49 1 307 194 101 70 chrX 56612556 56612685 -120361455 - L1M4c LINE L1 -5076 1308 1176 2665 55 3 0 chrX 56612695 56613005 -120361135 - AluY SINE Alu 0 311 1 300 111 0 0 chrX 56613010 56613055 -120361085 + (TCCCC)n Simple_repeat Simple_repeat 4 48 0 186 43 0 0 chrX 56613055 56613078 -120361062 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2109 121 0 0 chrX 56613079 56613359 -120360781 - AluSx SINE Alu -32 280 1 270 191 103 15 chrX 56613390 56613452 -120360688 + L2 LINE L2 3193 3261 -6 243 61 0 0 chrX 56613452 56613485 -120360655 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2273 113 0 10 chrX 56613907 56614217 -120359923 - AluSc SINE Alu -2 307 1 2248 128 0 0 chrX 56614250 56614597 -120359543 + AluSx SINE Alu 1 347 0 2388 99 10 0 chrX 56614606 56614910 -120359230 + AluSp SINE Alu 1 307 -6 254 233 11 122 chrX 56615131 56615221 -120358919 - L2 LINE L2 -5 3267 3188 430 361 35 27 chrX 56615399 56615922 -120358218 - L2 LINE L2 -202 3070 2544 2421 87 0 0 chrX 56616000 56616299 -120357841 - AluSx SINE Alu -13 299 1 186 295 205 0 chrX 56616299 56616377 -120357763 + MIR SINE MIR 48 141 -67 2427 106 0 0 chrX 56616386 56616698 -120357442 + AluSq SINE Alu 1 312 -1 239 343 83 31 chrX 56616823 56617112 -120357028 - L2 LINE L2 -870 2444 2141 503 219 34 17 chrX 56617152 56617271 -120356869 + MIR3 SINE MIR 76 196 -12 213 241 112 60 chrX 56617306 56617422 -120356718 - L2 LINE L2 -1291 2023 1902 2365 88 3 0 chrX 56617521 56617816 -120356324 + AluSp SINE Alu 1 296 -17 214 328 15 0 chrX 56617890 56617957 -120356183 + L2 LINE L2 2244 2311 -1003 43 35 0 0 chrX 56618009 56618066 -120356074 + AT_rich Low_complexity Low_complexity 1 57 0 730 255 91 33 chrX 56618094 56618237 -120355903 - MIR SINE MIR -1 261 97 2030 152 0 3 chrX 56618237 56618534 -120355606 - AluJb SINE Alu -16 296 1 730 255 91 33 chrX 56618534 56618633 -120355507 - MIR SINE MIR -165 97 5 189 408 0 0 chrX 56618746 56618822 -120355318 + L2 LINE L2 2586 2661 -653 404 274 96 30 chrX 56618940 56619137 -120355003 + L2 LINE L2 2855 3064 -208 234 91 0 0 chrX 56619236 56619269 -120354871 + (T)n Simple_repeat Simple_repeat 1 33 0 577 142 10 17 chrX 56619282 56619393 -120354747 + LTR49-int LTR ERV1 3814 3910 -1026 496 101 29 0 chrX 56619448 56619517 -120354623 + AluJ/FLAM SINE Alu 5 75 -237 751 164 53 20 chrX 56619525 56619677 -120354463 + LTR49-int LTR ERV1 5229 5385 -946 2340 85 0 0 chrX 56619677 56620002 -120354138 + AluSc SINE Alu 1 325 0 1997 164 0 3 chrX 56620019 56620330 -120353810 + AluJb SINE Alu 1 310 -2 2287 97 0 31 chrX 56620332 56620651 -120353489 + AluSc SINE Alu 1 309 0 2203 112 7 0 chrX 56620660 56620956 -120353184 + AluSx SINE Alu 1 298 -14 2536 78 0 3 chrX 56620958 56621266 -120352874 + AluY SINE Alu 3 309 -2 518 168 0 9 chrX 56621426 56621533 -120352607 - MER113 DNA MER1_type? -415 106 1 932 117 0 0 chrX 56621926 56622070 -120352070 - AluSg/x SINE Alu 0 308 165 31 26 0 0 chrX 56622106 56622144 -120351996 + AT_rich Low_complexity Low_complexity 1 38 0 2081 127 0 7 chrX 56622144 56622479 -120351661 + AluSg SINE Alu 1 310 0 1028 146 7 0 chrX 56622488 56622639 -120351501 + FRAM SINE Alu 23 174 -2 664 131 0 103 chrX 56622669 56622814 -120351326 - MER31B LTR ERV1 -80 386 257 2081 107 0 7 chrX 56622845 56623125 -120351015 + AluSg SINE Alu 1 278 -32 432 0 0 0 chrX 56623130 56623178 -120350962 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 2215 106 0 0 chrX 56623183 56623496 -120350644 + AluSg SINE Alu 1 313 0 1201 127 0 22 chrX 56623497 56623703 -120350437 + AluSg/x SINE Alu 126 312 0 783 158 68 45 chrX 56623703 56623880 -120350260 - MER31B LTR ERV1 -285 181 1 1499 163 68 33 chrX 56623881 56624218 -120349922 - MER31B-int LTR ERV1 -21 4915 4567 356 191 0 56 chrX 56624293 56624382 -120349758 - MER31B-int LTR ERV1 -371 4565 4482 526 200 0 0 chrX 56624453 56624553 -120349587 - MER31B-int LTR ERV1 -467 4469 4370 333 198 115 31 chrX 56624654 56624750 -120349390 - LTR37A LTR ERV1 -322 104 1 2258 114 0 7 chrX 56624822 56625121 -120349019 + AluSx SINE Alu 1 297 -15 2493 65 0 31 chrX 56625123 56625444 -120348696 + AluY SINE Alu 1 311 0 1290 154 8 138 chrX 56625456 56625475 -120348665 - MER31B-int LTR ERV1 -704 4232 4212 2372 93 3 13 chrX 56625475 56625785 -120348355 - AluSp SINE Alu -6 307 1 1290 154 8 138 chrX 56625785 56625843 -120348297 - MER31B-int LTR ERV1 -724 4212 4148 2044 128 3 3 chrX 56625843 56626163 -120347977 + AluSx SINE Alu 3 322 0 1290 154 8 138 chrX 56626163 56626270 -120347870 - MER31B-int LTR ERV1 -788 4148 4115 1935 178 0 3 chrX 56626270 56626579 -120347561 - AluJb SINE Alu -4 308 1 1290 154 8 138 chrX 56626579 56626760 -120347380 - MER31B-int LTR ERV1 -821 4115 3912 501 33 16 0 chrX 56626765 56626826 -120347314 - AluY SINE Alu -254 64 3 2412 188 57 66 chrX 56626875 56627204 -120346936 - MER31B-int LTR ERV1 -1026 3910 3579 2138 113 3 3 chrX 56627204 56627529 -120346611 + AluSx SINE Alu 1 325 0 2496 70 0 3 chrX 56627529 56627831 -120346309 + AluY SINE Alu 1 301 -10 2412 188 57 66 chrX 56627831 56628132 -120346008 - MER31B-int LTR ERV1 -1355 3581 3284 358 175 158 42 chrX 56628171 56628291 -120345849 - MER63 DNA MER1_type -302 760 1 478 320 131 66 chrX 56628291 56628551 -120345589 + L2 LINE L2 2326 2568 -704 2492 75 0 0 chrX 56628551 56628845 -120345295 - AluSc SINE Alu -15 294 1 478 320 131 66 chrX 56628845 56629219 -120344921 + L2 LINE L2 2568 2916 -356 2429 60 0 60 chrX 56629219 56629550 -120344590 - AluY SINE Alu 0 311 1 478 320 131 66 chrX 56629550 56629601 -120344539 + L2 LINE L2 2916 2962 -310 2290 102 0 0 chrX 56629601 56629894 -120344246 + AluSx SINE Alu 1 293 -19 478 320 131 66 chrX 56629894 56630104 -120344036 + L2 LINE L2 2962 3272 0 861 284 39 20 chrX 56630593 56630847 -120343293 + MIR SINE MIR 4 262 0 2088 113 51 7 chrX 56631294 56631586 -120342554 - AluSg SINE Alu -5 305 1 596 77 0 0 chrX 56633720 56633798 -120340342 - MADE1 DNA Mariner 0 80 3 2314 99 0 7 chrX 56633921 56634223 -120339917 - AluSq SINE Alu -13 300 1 1825 108 19 98 chrX 56634239 56634593 -120339547 - AluSx SINE Alu 0 330 1 2248 115 0 6 chrX 56635179 56635493 -120338647 - AluSx SINE Alu 0 312 1 2459 80 3 0 chrX 56636415 56636716 -120337424 - AluSq SINE Alu -11 302 1 329 299 105 88 chrX 56637066 56637360 -120336780 + L2 LINE L2 2951 3249 -23 789 268 64 17 chrX 56637366 56637601 -120336539 - MIR SINE MIR 0 262 17 1400 276 184 90 chrX 56637807 56638451 -120335689 + L3 LINE CR1 468 1050 -527 816 142 0 0 chrX 56638451 56638571 -120335569 + FLAM_C SINE Alu 5 124 -9 1400 276 184 90 chrX 56638571 56638588 -120335552 + L3 LINE CR1 1050 1064 -513 2214 118 0 16 chrX 56638588 56638901 -120335239 + AluSc SINE Alu 1 308 -1 1400 276 184 90 chrX 56638901 56639228 -120334912 + L3 LINE CR1 1064 1550 -27 1991 155 6 19 chrX 56639232 56639548 -120334592 - AluJb SINE Alu 0 312 1 496 290 131 22 chrX 56639745 56639928 -120334212 - L3 LINE CR1 -3 1574 1372 1313 301 366 9 chrX 56640090 56641060 -120333080 - L3 LINE CR1 -200 1377 62 723 72 0 31 chrX 56642266 56642363 -120331777 + FLAM SINE Alu 39 132 -11 351 65 0 0 chrX 56642683 56642729 -120331411 + (CA)n Simple_repeat Simple_repeat 1 46 0 225 318 47 28 chrX 56642756 56642850 -120331290 - L3 LINE CR1 -437 1140 1045 355 260 133 35 chrX 56642850 56643023 -120331117 + MIR3 SINE MIR 3 192 -16 281 342 107 25 chrX 56643346 56643542 -120330598 - L3 LINE CR1 -804 773 562 231 88 0 0 chrX 56643778 56643812 -120330328 + (GGA)n Simple_repeat Simple_repeat 2 35 0 387 171 0 0 chrX 56645114 56645190 -120328950 + (TG)n Simple_repeat Simple_repeat 2 77 0 2061 100 35 3 chrX 56646435 56646892 -120327248 - AluSx SINE Alu 0 466 1 264 59 0 0 chrX 56646963 56646997 -120327143 + (TG)n Simple_repeat Simple_repeat 2 35 0 1804 164 11 0 chrX 56646997 56647278 -120326862 - AluJb SINE Alu -28 284 1 2462 76 3 0 chrX 56648864 56649165 -120324975 - AluSq SINE Alu -10 303 2 1971 118 0 51 chrX 56649507 56649820 -120324320 + AluJb SINE Alu 1 297 -15 791 222 101 5 chrX 56651562 56651760 -120322380 + MIR SINE MIR 30 246 -16 654 175 8 32 chrX 56651914 56652040 -120322100 + MER5A DNA MER1_type 67 189 0 1732 176 10 29 chrX 56652911 56653224 -120320916 + AluJo SINE Alu 1 307 -5 1879 116 0 0 chrX 56653539 56653790 -120320350 - AluSq SINE Alu -3 310 60 2548 74 3 0 chrX 56653927 56654239 -120319901 + AluSp SINE Alu 1 313 0 2569 80 0 0 chrX 56654824 56655135 -120319005 + AluSx SINE Alu 1 311 -1 2154 98 3 38 chrX 56655306 56655624 -120318516 + AluSx SINE Alu 2 308 -4 2293 115 16 0 chrX 56655992 56656297 -120317843 - AluSx SINE Alu -2 310 1 286 250 25 38 chrX 56656354 56656434 -120317706 + Charlie4 DNA MER1_type 1883 1961 0 335 266 26 9 chrX 56656607 56656720 -120317420 + CT-rich Low_complexity Low_complexity 2 116 0 9477 69 5 1 chrX 56856912 56858937 -120115203 + L1PA6 LINE L1 4113 6147 -7 2213 121 10 0 chrX 56858952 56859259 -120114881 + AluSq SINE Alu 1 310 -3 2499 63 0 3 chrX 56859539 56859838 -120114302 + AluY SINE Alu 1 298 -13 606 345 16 31 chrX 56860074 56860459 -120113681 + MER89-int LTR ERV1 6121 6499 -302 3996 246 16 10 chrX 56860578 56861668 -120112472 - L1P LINE L1 -3296 2850 1754 2750 170 4 35 chrX 56861668 56862497 -120111643 + L1P4 LINE L1 4736 5540 -626 837 201 13 23 chrX 56862497 56862780 -120111360 + MER90 LTR ERV1 288 575 0 201 132 0 0 chrX 56862903 56862941 -120111199 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 200 163 23 0 chrX 56862982 56863025 -120111115 + GA-rich Low_complexity Low_complexity 5 48 0 2032 137 3 0 chrX 56863623 56863916 -120110224 - AluJo SINE Alu -18 294 1 635 210 38 43 chrX 56863934 56864120 -120110020 - MIR SINE MIR -75 187 3 711 196 87 27 chrX 56865619 56865803 -120108337 + MIR SINE MIR 31 225 -37 3099 289 46 15 chrX 56865963 56867149 -120106991 + L1MEc LINE L1 426 1648 -4748 * 3208 252 22 18 chrX 56867126 56868170 -120105970 + L1MEc LINE L1 2150 3156 -3059 668 218 18 73 chrX 56868139 56868359 -120105781 + L1MB4 LINE L1 5462 5669 -574 * 421 146 24 0 chrX 56868358 56868440 -120105700 + L1MA7 LINE L1 6207 6290 -1 * 2707 183 32 6 chrX 56868445 56868974 -120105166 + L1MB4 LINE L1 5662 6204 -45 37289 93 10 15 chrX 56868985 56875176 -120098964 + L1PA6 LINE L1 11 6167 0 745 156 8 8 chrX 56875235 56875357 -120098783 + FLAM_C SINE Alu 2 123 -20 308 270 132 13 chrX 56875896 56876055 -120098085 + MIR SINE MIR 81 258 -4 2287 106 10 0 chrX 56876373 56876674 -120097466 - AluSg SINE Alu -6 304 1 421 274 72 33 chrX 56876783 56876936 -120097204 - L2 LINE L2 -2 3270 3112 1407 265 14 50 chrX 56877121 56877626 -120096514 - L2 LINE L2 -3 3310 2824 4459 170 28 5 chrX 56877636 56879223 -120094917 + L1PA16 LINE L1 4366 5986 -180 354 319 30 0 chrX 56879302 56879488 -120094652 + L1MC4a LINE L1 4885 5075 -1071 1245 38 1 2 chrX 56879567 56879740 -120094400 + L1P3 LINE L1 5368 5539 -615 7532 194 12 4 chrX 56879740 56881172 -120092968 + L1P LINE L1 2251 3698 -2448 297 51 0 0 chrX 56881172 56881211 -120092929 + (CAA)n Simple_repeat Simple_repeat 2 40 0 7532 194 12 4 chrX 56881211 56881293 -120092847 + L1P LINE L1 3698 3778 -2368 1406 253 30 24 chrX 56881403 56881862 -120092278 - L1M3c LINE L1 -4766 1375 914 534 313 32 74 chrX 56881959 56882339 -120091801 - L1M3c LINE L1 -5527 604 241 950 295 32 34 chrX 56882664 56883132 -120091008 + L1MC4a LINE L1 5257 5723 -2085 1088 57 0 0 chrX 56883133 56883257 -120090883 + AluSq/x SINE Alu 1 124 -189 570 262 13 0 chrX 56883274 56883423 -120090717 + L1MC4a LINE L1 5715 5865 -1943 2265 109 3 0 chrX 56883424 56883717 -120090423 - AluSx SINE Alu -18 294 1 22 0 0 0 chrX 56884333 56884355 -120089785 + AT_rich Low_complexity Low_complexity 1 22 0 1591 184 148 23 chrX 56884476 56884862 -120089278 - MER63B DNA MER1_type -2 434 1 249 289 60 0 chrX 56885970 56886053 -120088087 + MIR SINE MIR 95 182 -80 864 259 27 5 chrX 56886309 56886533 -120087607 + MER102b DNA MER1_type 96 324 -17 475 194 11 0 chrX 56886720 56886813 -120087327 - MLT1I LTR MaLR -6 403 310 199 271 107 57 chrX 56887946 56888086 -120086054 + MIR3 SINE MIR 9 155 -53 327 286 197 6 chrX 56889178 56889356 -120084784 - MIR SINE MIR -1 261 50 744 91 0 0 chrX 56889390 56889500 -120084640 + (TCC)n Simple_repeat Simple_repeat 1 110 0 582 261 19 13 chrX 56889789 56889946 -120084194 - MIR3 SINE MIR -5 203 46 226 248 74 50 chrX 56890238 56890359 -120083781 - MIR SINE MIR -65 143 20 2067 60 96 14 chrX 56891613 56891782 -120082358 - AluSq SINE Alu -9 304 101 2614 33 0 3 chrX 56891782 56892086 -120082054 - AluY SINE Alu -8 303 1 2067 60 96 14 chrX 56892086 56892197 -120081943 - AluSq SINE Alu -212 101 1 202 279 15 15 chrX 56892207 56892275 -120081865 - L2 LINE L2 0 3313 3246 246 203 119 34 chrX 56893169 56893228 -120080912 + MER20 DNA MER1_type 5 68 -151 554 285 27 65 chrX 56893229 56893709 -120080431 - L1M4 LINE L1 -1299 4847 4386 213 65 0 0 chrX 56893884 56893915 -120080225 + (T)n Simple_repeat Simple_repeat 1 31 0 322 327 0 0 chrX 56893937 56894041 -120080099 - L1M4 LINE L1 -1999 4147 4044 524 118 25 25 chrX 56894075 56894194 -120079946 + CT-rich Low_complexity Low_complexity 2 120 0 591 184 13 20 chrX 56894470 56894622 -120079518 + CT-rich Low_complexity Low_complexity 3 153 0 1287 128 15 15 chrX 56894675 56894878 -120079262 - AluJb SINE Alu -40 272 70 584 159 88 0 chrX 56894917 56895030 -120079110 - FLAM_C SINE Alu -10 123 1 732 206 16 52 chrX 56895229 56895345 -120078795 - MER5A DNA MER1_type 0 189 70 530 28 28 0 chrX 56895345 56895416 -120078724 + (CTTTG)n Simple_repeat Simple_repeat 2 74 0 2433 71 10 0 chrX 56895421 56895730 -120078410 - AluSp SINE Alu -1 312 1 732 206 16 52 chrX 56895730 56895801 -120078339 - MER5A DNA MER1_type -123 66 3 513 219 22 15 chrX 56895807 56895944 -120078196 - L1MC5 LINE L1 -72 7889 7752 1842 275 49 45 chrX 56896112 56896963 -120077177 - L1MC4 LINE L1 -99 7943 7089 1680 230 40 31 chrX 56896980 56897262 -120076878 + Charlie5 DNA MER1_type 637 915 -1709 246 32 0 0 chrX 56897262 56897293 -120076847 + (CA)n Simple_repeat Simple_repeat 2 32 0 1680 230 40 31 chrX 56897293 56897894 -120076246 + Charlie5 DNA MER1_type 915 1562 -1062 729 255 55 19 chrX 56897894 56898219 -120075921 - L1M4 LINE L1 -2892 3254 2918 2264 132 5 11 chrX 56898248 56898619 -120075521 - L1MA8 LINE L1 0 6291 5923 1762 158 3 3 chrX 56898629 56898932 -120075208 - L1MA8 LINE L1 -442 5849 5547 2415 207 70 43 chrX 56898967 56899323 -120074817 - L1MDa LINE L1 -5898 642 260 189 74 0 0 chrX 56899323 56899350 -120074790 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 2415 207 70 43 chrX 56899350 56899603 -120074537 - L1MDa LINE L1 -6280 260 16 2363 110 19 51 chrX 56899609 56900019 -120074121 - L1MA7 LINE L1 -1 6290 5894 6354 153 9 11 chrX 56900027 56901327 -120072813 - L1MA5 LINE L1 0 6300 5000 6113 166 15 27 chrX 56901327 56901758 -120072382 - L1MA5 LINE L1 -1358 4788 4353 3060 46 3 0 chrX 56901758 56902125 -120072015 - L1PA8 LINE L1 0 6172 5805 6113 166 15 27 chrX 56902125 56902889 -120071251 - L1MA5 LINE L1 -1793 4353 3607 215 100 0 25 chrX 56902889 56902929 -120071211 + (CCCCCT)n Simple_repeat Simple_repeat 3 41 0 787 333 78 28 chrX 56903093 56903552 -120070588 - L1M2 LINE L1 -6355 494 13 20044 103 20 31 chrX 56904169 56910370 -120063770 + L1PA7 LINE L1 12 6154 0 444 309 126 9 chrX 56910415 56910638 -120063502 - MIR SINE MIR -8 254 6 6540 240 55 36 chrX 56911554 56913200 -120060940 + L1M4 LINE L1 7 1620 -5024 180 0 0 0 chrX 56913200 56913220 -120060920 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6540 240 55 36 chrX 56913220 56914805 -120059335 + L1M4 LINE L1 1620 3173 -3471 2279 34 8 4 chrX 56914805 56915073 -120059067 + AluY SINE Alu 39 307 -4 6540 240 55 36 chrX 56915073 56916502 -120057638 + L1M4 LINE L1 3173 4995 -1649 13025 170 42 38 chrX 56916517 56917667 -120056473 + L1M1 LINE L1 2529 3673 -2514 381 43 0 0 chrX 56917667 56917714 -120056426 + (CA)n Simple_repeat Simple_repeat 2 48 0 13025 170 42 38 chrX 56917714 56919465 -120054675 + L1M1 LINE L1 3673 5444 -743 884 192 24 25 chrX 56919466 56919714 -120054426 + L1M4 LINE L1 5632 5875 -794 633 238 118 79 chrX 56919715 56920232 -120053908 + L1MEc LINE L1 1727 2263 -4133 2207 87 23 3 chrX 56920251 56920551 -120053589 - AluSc SINE Alu -1 308 3 3582 205 10 17 chrX 56920560 56921380 -120052760 + L1MEc LINE L1 3130 3943 -2272 12764 102 0 11 chrX 56921387 56924010 -120050130 + L1PA8A LINE L1 3480 6128 -3 3571 278 50 34 chrX 56924180 56925806 -120048334 + L1MC/D LINE L1 3507 5157 -989 1094 174 0 24 chrX 56926570 56926809 -120047331 - AluJb SINE Alu 0 316 83 2291 164 17 29 chrX 56930012 56930428 -120043712 + MSTB2 LTR MaLR 39 449 -8 254 349 0 0 chrX 56932058 56932184 -120041956 - L2 LINE L2 -842 2472 2347 731 342 33 37 chrX 56933830 56934400 -120039740 + L1MA6 LINE L1 1216 1811 -4754 3156 249 31 54 chrX 56934644 56936553 -120037587 + L1MA6 LINE L1 2050 3874 -3691 312 226 45 28 chrX 56936555 56936732 -120037408 + (TA)n Simple_repeat Simple_repeat 1 180 0 13756 173 23 18 chrX 56936752 56937910 -120036230 + L1MA6 LINE L1 3868 5019 -2700 237 65 0 0 chrX 56937910 56937941 -120036199 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 13756 173 23 18 chrX 56937941 56938500 -120035640 + L1MA6 LINE L1 5019 5574 -2145 2121 112 47 49 chrX 56938500 56938865 -120035275 - THE1B LTR MaLR 0 364 1 13756 173 23 18 chrX 56938865 56940963 -120033177 + L1MA6 LINE L1 5574 7697 -22 293 232 92 60 chrX 56941383 56941608 -120032532 + L1MC/D LINE L1 5265 5495 -669 249 300 0 42 chrX 56942860 56942980 -120031160 + L2 LINE L2 3198 3312 -1 1477 236 37 96 chrX 56945029 56945652 -120028488 + MLT1E LTR MaLR 1 586 -7 384 330 70 0 chrX 56945768 56945968 -120028172 + MIR SINE MIR 37 250 -12 425 191 9 0 chrX 56946247 56946362 -120027778 + CT-rich Low_complexity Low_complexity 3 118 0 273 269 0 0 chrX 56947099 56947166 -120026974 + MIR SINE MIR 78 144 -64 190 298 92 30 chrX 56947251 56947382 -120026758 + L2 LINE L2 3129 3267 -5 333 0 0 0 chrX 56947884 56947921 -120026219 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 558 29 0 0 chrX 56947920 56947988 -120026152 + (GA)n Simple_repeat Simple_repeat 2 69 0 181 395 34 0 chrX 56948259 56948378 -120025762 + MIR3 SINE MIR 82 204 -4 272 314 39 7 chrX 56949529 56949682 -120024458 + L1MC/D LINE L1 5730 5887 -1921 1034 211 73 58 chrX 56950548 56951013 -120023127 - MLT1B LTR MaLR 0 390 1 323 267 38 9 chrX 56951760 56951865 -120022275 - L2 LINE L2 -1434 1880 1773 202 376 0 0 chrX 56952028 56952113 -120022027 - L3 LINE CR1 -75 1502 1418 415 200 0 56 chrX 56952512 56952602 -120021538 + MER81 DNA DNA 15 99 -15 184 68 23 45 chrX 56955116 56955160 -120018980 + (CCA)n Simple_repeat Simple_repeat 1 43 0 664 196 35 145 chrX 56956161 56956472 -120017668 + L2 LINE L2 2996 3272 0 206 111 37 56 chrX 56958053 56958107 -120016033 + G-rich Low_complexity Low_complexity 1 53 0 960 75 0 0 chrX 56958517 56958651 -120015489 + (GGA)n Simple_repeat Simple_repeat 1 134 0 182 243 176 0 chrX 56958793 56958867 -120015273 + MIR SINE MIR 176 262 0 207 162 0 0 chrX 56959587 56959624 -120014516 + (TTG)n Simple_repeat Simple_repeat 1 37 0 2026 69 19 0 chrX 56959627 56959888 -120014252 - AluSq SINE Alu -28 285 20 452 318 43 70 chrX 56960042 56960598 -120013542 - L1M4 LINE L1 -1426 4720 4180 452 280 0 14 chrX 56960738 56960881 -120013259 + LTR41 LTR ERVL 1 141 -632 445 236 8 100 chrX 56961177 56961418 -120012722 + LTR41 LTR ERVL 549 767 -6 219 167 0 0 chrX 56961505 56961547 -120012593 + CT-rich Low_complexity Low_complexity 2 43 0 2341 94 0 7 chrX 56961703 56962012 -120012128 + AluSc SINE Alu 1 307 -2 471 66 0 0 chrX 56962643 56962704 -120011436 + L1PA5 LINE L1 6094 6154 0 1431 116 0 0 chrX 56962720 56962918 -120011222 + AluSx SINE Alu 1 198 -114 898 189 16 16 chrX 56963142 56963327 -120010813 - MER53 DNA DNA -4 185 1 296 289 61 26 chrX 56963329 56963524 -120010616 + L1ME LINE L1 5645 5765 -397 932 89 0 15 chrX 56963709 56963879 -120010261 - FLAM_C SINE Alu 0 168 1 255 310 40 10 chrX 56964002 56964102 -120010038 - L1M4 LINE L1 -1299 4847 4745 345 250 97 56 chrX 56964370 56964566 -120009574 + L1 LINE L1 2136 2339 -3807 1605 221 24 43 chrX 56964602 56965023 -120009117 - L1ME2 LINE L1 -3 6161 5749 180 0 0 0 chrX 56966669 56966689 -120007451 + (A)n Simple_repeat Simple_repeat 1 20 0 6406 143 14 14 chrX 56967368 56969116 -120005024 - L1PB1 LINE L1 -3 6148 4398 504 0 0 0 chrX 56969116 56969172 -120004968 + (TTTTA)n Simple_repeat Simple_repeat 2 57 0 6406 143 14 14 chrX 56969172 56969478 -120004662 - L1PB1 LINE L1 -1753 4398 4094 4431 163 1 16 chrX 56969668 56970477 -120003663 + L1 LINE L1 3582 4378 -1768 1054 191 0 58 chrX 56970523 56970780 -120003360 - L1ME2 LINE L1 -865 5281 5040 4096 159 16 7 chrX 56970788 56971488 -120002652 - L1MA4A LINE L1 -7 6296 5591 2062 308 50 46 chrX 56972754 56973865 -120000275 + MER89-int LTR ERV1 1905 3020 -1627 1817 153 28 0 chrX 56974144 56974432 -119999708 + AluSx SINE Alu 1 296 -16 17578 137 14 18 chrX 56974448 56977287 -119996853 + L1P LINE L1 13 2841 -3305 3312 44 2 2 chrX 56977285 56977693 -119996447 - L1P LINE L1 -1413 4733 4326 * 1078 67 0 0 chrX 56977699 56977833 -119996307 + L1PA4 LINE L1 6020 6153 -2 340 346 44 7 chrX 56978321 56978457 -119995683 - MIR3 SINE MIR -23 185 45 1471 186 52 71 chrX 56978521 56978902 -119995238 - MLT1A2 LTR MaLR 0 374 1 7856 42 0 1 chrX 56979658 56980713 -119993427 + L1PA5 LINE L1 5096 6149 -5 2961 90 2 15 chrX 56980733 56981188 -119992952 + L1PA6 LINE L1 2821 3269 -2877 7980 32 0 1 chrX 56981188 56982343 -119991797 + L1PA4 LINE L1 4998 6151 -4 285 51 0 0 chrX 56982420 56982459 -119991681 + (TG)n Simple_repeat Simple_repeat 2 40 0 29 60 0 0 chrX 56982493 56982543 -119991597 + AT_rich Low_complexity Low_complexity 1 50 0 16314 75 5 2 chrX 56982543 56985420 -119988720 + L1PA6 LINE L1 3268 6147 -7 2210 120 10 0 chrX 56985435 56985743 -119988397 + AluSq SINE Alu 1 311 -2 2472 63 0 3 chrX 56986023 56986322 -119987818 + AluY SINE Alu 1 298 -13 591 348 16 31 chrX 56986558 56986943 -119987197 + MER89-int LTR ERV1 6121 6499 -302 4020 246 16 10 chrX 56987062 56988152 -119985988 - L1P LINE L1 -3296 2850 1754 2761 170 4 37 chrX 56988152 56988982 -119985158 + L1P4 LINE L1 4736 5540 -626 832 201 13 23 chrX 56988982 56989265 -119984875 + MER90 LTR ERV1 288 575 0 186 281 94 0 chrX 56989305 56989369 -119984771 + L2 LINE L2 3146 3215 -57 201 132 0 0 chrX 56989388 56989426 -119984714 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 200 163 23 0 chrX 56989467 56989510 -119984630 + GA-rich Low_complexity Low_complexity 5 48 0 185 356 43 6 chrX 56989654 56989817 -119984323 + L2 LINE L2 2125 2293 -1021 2011 137 3 0 chrX 56990108 56990401 -119983739 - AluJo SINE Alu -18 294 1 696 210 38 43 chrX 56990419 56990605 -119983535 - MIR SINE MIR -75 187 3 192 322 96 17 chrX 56990614 56990729 -119983411 - L2 LINE L2 -2831 483 360 774 196 87 27 chrX 56992104 56992288 -119981852 + MIR SINE MIR 31 225 -37 3156 289 46 15 chrX 56992448 56993634 -119980506 + L1MEc LINE L1 426 1648 -4748 * 4212 251 24 35 chrX 56993611 56994716 -119979424 + L1MEc LINE L1 2150 3185 -3030 990 168 6 6 chrX 56994716 56994877 -119979263 + U1 snRNA snRNA 1 161 -4 4212 251 24 35 chrX 56994877 56995314 -119978826 + L1MEc LINE L1 3185 3626 -2589 1462 203 66 45 chrX 56995390 56996047 -119978093 + L1MB4 LINE L1 4942 5600 -574 349 219 24 0 chrX 56996046 56996128 -119978012 + L1MA7 LINE L1 6207 6290 -1 * 3006 182 35 5 chrX 56996132 56996698 -119977442 + L1MB4 LINE L1 5594 6176 -4 808 156 8 8 chrX 56996709 56996831 -119977309 + FLAM_C SINE Alu 2 123 -20 304 274 131 34 chrX 56997349 56997524 -119976616 + MIR SINE MIR 66 257 -5 443 292 71 32 chrX 56997941 56998095 -119976045 - L2 LINE L2 -2 3270 3111 1385 267 18 53 chrX 56998289 56998794 -119975346 - L2 LINE L2 -10 3303 2817 5621 170 19 5 chrX 56998803 57000579 -119973561 + L1PA16 LINE L1 4366 6166 0 2731 247 25 88 chrX 57000591 57001070 -119973070 - L2 LINE L2 -525 2789 2281 313 149 0 0 chrX 57001070 57001117 -119973023 + Alu SINE Alu 2 48 -254 2731 247 25 88 chrX 57001117 57001429 -119972711 - L2 LINE L2 -1033 2281 2017 7164 97 6 9 chrX 57001429 57002401 -119971739 - LTR5 LTR ERVK 0 969 1 2731 247 25 88 chrX 57002401 57002518 -119971622 - L2 LINE L2 -1297 2017 1894 511 343 102 35 chrX 57002673 57003067 -119971073 - L2 LINE L2 -520 2794 2375 404 287 52 9 chrX 57003156 57003271 -119970869 - MIR SINE MIR -73 135 16 231 273 0 0 chrX 57003620 57003664 -119970476 - L2 LINE L2 -93 3179 3136 1424 213 9 27 chrX 57003716 57004045 -119970095 - L1MD3 LINE L1 -5 7990 7668 2285 160 28 24 chrX 57004318 57004470 -119969670 - MSTB LTR MaLR 0 426 276 1579 135 89 113 chrX 57004470 57004929 -119969211 - LTR7 LTR ERV1 -2 448 1 2285 160 28 24 chrX 57004929 57005200 -119968940 - MSTB LTR MaLR -150 276 1 1951 87 0 50 chrX 57005489 57005766 -119968374 + L1PA11 LINE L1 5912 6174 0 2494 61 0 10 chrX 57005778 57006091 -119968049 + AluY SINE Alu 1 310 -1 253 294 71 32 chrX 57006284 57006749 -119967391 + L1MC4a LINE L1 4788 5125 -1021 261 0 0 0 chrX 57009040 57009069 -119965071 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 1028 266 73 57 chrX 57009080 57009221 -119964919 + L1MC4a LINE L1 5458 5595 -2213 1083 201 9 5 chrX 57009221 57009435 -119964705 + U3 snRNA snRNA 3 217 0 1028 266 73 57 chrX 57009435 57009785 -119964355 + L1MC4a LINE L1 5595 5957 -1851 1765 125 3 57 chrX 57009802 57010127 -119964013 + AluSc SINE Alu 1 309 0 323 345 50 0 chrX 57010146 57010285 -119963855 + L1MC4a LINE L1 6020 6165 -1643 448 263 71 49 chrX 57010472 57010696 -119963444 + L1MC5 LINE L1 2035 2263 -4133 3170 224 103 66 chrX 57010697 57011266 -119962874 + L1MC5 LINE L1 5710 6256 -1774 1487 115 41 4 chrX 57011266 57011510 -119962630 + L1MA3 LINE L1 6053 6305 0 3170 224 103 66 chrX 57011510 57012795 -119961345 + L1MC5 LINE L1 6256 7491 -539 498 17 0 0 chrX 57012795 57012854 -119961286 + (TC)n Simple_repeat Simple_repeat 1 59 0 387 60 0 0 chrX 57012853 57012903 -119961237 + (CA)n Simple_repeat Simple_repeat 1 50 0 * 3170 224 103 66 chrX 57012854 57013212 -119960928 + L1MC5 LINE L1 7491 7985 -45 323 304 16 16 chrX 57013263 57013388 -119960752 + L1MC4a LINE L1 3253 3377 -2838 1040 134 5 93 chrX 57013451 57013667 -119960473 + MER20 DNA MER1_type 23 219 0 480 312 119 22 chrX 57013903 57014814 -119959326 + L1MC4a LINE L1 3659 4686 -1529 1628 165 21 18 chrX 57014814 57015099 -119959041 + AluJo SINE Alu 3 288 -24 480 312 119 22 chrX 57015099 57015136 -119959004 + L1MC4a LINE L1 4686 4718 -1497 2374 46 3 0 chrX 57015256 57015587 -119958553 + AluY SINE Alu 1 332 0 180 0 0 0 chrX 57015751 57015771 -119958369 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1356 119 0 0 chrX 57015777 57015954 -119958186 - AluSg/x SINE Alu -30 282 106 1480 215 67 38 chrX 57015959 57016406 -119957734 - MLT1C LTR MaLR -2 465 6 271 231 34 93 chrX 57016429 57016668 -119957472 + L1MC4a LINE L1 5188 5411 -804 3190 185 11 0 chrX 57016668 57017219 -119956921 + MER41D LTR ERV1 1 557 0 271 231 34 93 chrX 57017219 57017247 -119956893 + L1MC4a LINE L1 5411 5439 -776 479 269 147 65 chrX 57017387 57017740 -119956400 + L1MC4a LINE L1 5735 6116 -1761 285 237 0 0 chrX 57018346 57018405 -119955735 + MIR SINE MIR 120 178 -84 313 185 108 23 chrX 57018803 57018933 -119955207 + L1ME4a LINE L1 5968 6108 -13 33 43 0 0 chrX 57018933 57018980 -119955160 + AT_rich Low_complexity Low_complexity 1 47 0 1788 70 0 9 chrX 57019137 57019366 -119954774 + AluSg/x SINE Alu 76 302 -10 2119 91 0 53 chrX 57019995 57020313 -119953827 - AluSq SINE Alu -12 301 1 2372 85 3 0 chrX 57020333 57020638 -119953502 - AluSx SINE Alu -6 306 1 417 70 0 0 chrX 57021840 57021897 -119952243 + (TG)n Simple_repeat Simple_repeat 1 57 0 1477 122 42 21 chrX 57022171 57022457 -119951683 + L1MA9 LINE L1 6018 6309 -3 2373 71 0 3 chrX 57023809 57024105 -119950035 - AluSc SINE Alu -14 295 1 2789 13 0 0 chrX 57024407 57024749 -119949391 + AluY SINE Alu 1 342 0 329 221 15 0 chrX 57025070 57025137 -119949003 - MER58A DNA MER1_type 0 167 100 1227 209 4 4 chrX 57025137 57025371 -119948769 + MER8 DNA MER2_type 1 234 -5 261 270 27 0 chrX 57025376 57025450 -119948690 - MER58A DNA MER1_type -6 101 26 476 225 51 62 chrX 57025461 57025495 -119948645 + MER5B DNA MER1_type 2 35 -143 2255 111 3 10 chrX 57025495 57025802 -119948338 - AluSx SINE Alu -7 305 1 476 225 51 62 chrX 57025802 57025945 -119948195 + MER5B DNA MER1_type 35 177 -1 274 370 41 36 chrX 57026312 57026531 -119947609 + L2 LINE L2 2134 2353 -961 340 178 148 20 chrX 57026674 57026775 -119947365 + MER103 DNA DNA 9 122 -44 333 372 23 33 chrX 57026992 57027207 -119946933 + L2 LINE L2 2695 2907 -407 287 231 118 21 chrX 57027216 57027358 -119946782 - MIR SINE MIR 0 262 104 426 214 107 30 chrX 57027767 57027893 -119946247 - L1MC4 LINE L1 0 8042 7898 333 0 0 0 chrX 57027893 57027930 -119946210 + (CA)n Simple_repeat Simple_repeat 1 37 0 426 214 107 30 chrX 57027930 57027971 -119946169 - L1MC4 LINE L1 -144 7898 7862 218 410 0 0 chrX 57028039 57028100 -119946040 - L2 LINE L2 -95 3177 3117 1665 159 40 27 chrX 57030669 57030965 -119943175 + AluJb SINE Alu 1 300 -12 207 100 0 0 chrX 57030967 57030997 -119943143 + (CA)n Simple_repeat Simple_repeat 1 30 0 687 233 70 119 chrX 57031000 57031343 -119942797 - MER46C DNA MER2_type -12 326 1 359 271 69 0 chrX 57031344 57031567 -119942573 - L1ME LINE L1 -727 5443 5198 221 264 56 14 chrX 57031695 57031767 -119942373 - MIR SINE MIR -67 141 67 1794 147 13 33 chrX 57031864 57032164 -119941976 - AluJo SINE Alu -18 294 1 1667 126 3 64 chrX 57032351 57032717 -119941423 - MER4A LTR ERV1 -2 662 261 264 97 375 14 chrX 57032717 57032789 -119941351 - MER4A LTR ERV1 -566 98 1 14802 98 56 33 chrX 57032797 57033104 -119941036 - MER4A-int LTR ERV1 -2 6596 6297 2211 97 3 7 chrX 57033104 57033393 -119940747 - AluSx SINE Alu -24 288 1 14802 98 56 33 chrX 57033393 57033831 -119940309 - MER4A-int LTR ERV1 -301 6297 5870 2269 100 0 0 chrX 57033831 57034121 -119940019 - AluSg SINE Alu -20 290 1 14802 98 56 33 chrX 57034121 57035994 -119938146 - MER4A-int LTR ERV1 -728 5870 3918 2360 72 10 19 chrX 57036027 57036334 -119937806 - AluSc SINE Alu -5 304 1 1714 76 85 6 chrX 57036334 57036650 -119937490 - MER4A-int LTR ERV1 -3521 3077 2737 1168 163 80 4 chrX 57036650 57036889 -119937251 + LTR8 LTR ERV1 1 257 -434 3568 80 89 22 chrX 57036889 57037538 -119936602 - MER4A-int LTR ERV1 -4103 2495 1803 1326 62 42 174 chrX 57037535 57037563 -119936577 - MER4A-int LTR ERV1 -4210 1268 1238 * 2461 61 0 0 chrX 57037563 57037857 -119936283 - AluY SINE Alu -17 294 1 1326 62 42 174 chrX 57037857 57038223 -119935917 - MER4A-int LTR ERV1 -4240 1238 504 2792 105 129 29 chrX 57038230 57038756 -119935384 - MER4A-int LTR ERV1 -6019 579 1 1651 135 14 44 chrX 57038759 57039115 -119935025 - MER4A LTR ERV1 0 664 261 233 133 22 22 chrX 57039115 57039160 -119934980 - MER4A LTR ERV1 -566 98 54 22 0 0 0 chrX 57039965 57039987 -119934153 + AT_rich Low_complexity Low_complexity 1 22 0 183 40 0 0 chrX 57040842 57040867 -119933273 - L2 LINE L2 -3 3310 3286 191 353 49 10 chrX 57041211 57041313 -119932827 - L2 LINE L2 -608 2706 2601 3352 233 76 4 chrX 57041483 57042294 -119931846 + L1MB8 LINE L1 11 880 -5979 * 7724 208 52 18 chrX 57042293 57044492 -119929648 + L1MB8 LINE L1 3503 5785 -1172 2351 105 0 0 chrX 57044492 57044797 -119929343 + AluSx SINE Alu 1 305 -7 7724 208 52 18 chrX 57044797 57044863 -119929277 + L1MB8 LINE L1 5785 5847 -1110 1745 137 66 47 chrX 57044871 57045236 -119928904 - MLT1B LTR MaLR -18 372 1 3984 163 24 50 chrX 57045236 57046356 -119927784 + L1MB8 LINE L1 5844 6934 -55 323 376 39 6 chrX 57046908 57047086 -119927054 - L2 LINE L2 -213 3059 2876 2240 101 0 7 chrX 57047433 57047730 -119926410 + AluSg SINE Alu 1 295 -15 192 40 0 0 chrX 57047892 57047917 -119926223 + (CA)n Simple_repeat Simple_repeat 2 26 0 199 349 68 20 chrX 57047943 57048089 -119926051 - L2 LINE L2 -213 3059 2907 538 278 47 40 chrX 57048409 57048686 -119925454 + L1MC4a LINE L1 5328 5606 -2202 354 280 75 10 chrX 57048681 57048881 -119925259 + L1MC4 LINE L1 7829 8041 -1 * 593 248 150 7 chrX 57048893 57049179 -119924961 + L1MC4a LINE L1 5600 5926 -1882 300 250 27 0 chrX 57050066 57050178 -119923962 - L1ME4a LINE L1 -11 6110 5996 451 279 143 14 chrX 57050357 57050497 -119923643 + MIR SINE MIR 54 211 -51 198 195 65 39 chrX 57051439 57051516 -119922624 - MIR SINE MIR -27 235 157 1834 206 49 4 chrX 57051630 57052081 -119922059 + L1ME1 LINE L1 5693 6163 -3 1818 161 0 0 chrX 57052137 57052404 -119921736 - AluJo SINE Alu -45 267 1 348 241 11 0 chrX 57052517 57052604 -119921536 - L1MEc LINE L1 -4596 1800 1713 5439 28 58 11 chrX 57052612 57053249 -119920891 - SVA Other Other 0 1386 720 428 0 0 0 chrX 57053350 57053400 -119920740 - SVA Other Other -944 442 393 21 36 0 0 chrX 57053451 57053479 -119920661 + GC_rich Low_complexity Low_complexity 1 28 0 4744 244 45 4 chrX 57053690 57053975 -119920165 - L1MEc LINE L1 -4667 1729 1457 2391 80 3 10 chrX 57053975 57054275 -119919865 + AluSp SINE Alu 1 298 -15 4744 244 45 4 chrX 57054275 57055623 -119918517 - L1MEc LINE L1 -4939 1457 35 5026 217 39 25 chrX 57055985 57056215 -119917925 + L1MC4a LINE L1 6609 6834 -974 1370 199 43 29 chrX 57056215 57056519 -119917621 - AluJb SINE Alu 0 308 1 5026 217 39 25 chrX 57056519 57056677 -119917463 + L1MC4a LINE L1 6834 6988 -820 216 67 0 0 chrX 57056677 57056707 -119917433 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 5026 217 39 25 chrX 57056707 57057500 -119916640 + L1MC4a LINE L1 6988 7808 0 698 228 203 15 chrX 57057552 57057749 -119916391 + MIR SINE MIR 15 248 -14 196 310 62 35 chrX 57058386 57058499 -119915641 + L2 LINE L2 2261 2376 -938 207 0 0 0 chrX 57058611 57058634 -119915506 + (CAT)n Simple_repeat Simple_repeat 2 24 0 278 285 72 40 chrX 57058710 57058987 -119915153 + L1MEc LINE L1 2202 2487 -3909 275 34 34 51 chrX 57059023 57059082 -119915058 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2139 110 0 14 chrX 57059095 57059387 -119914753 - AluSx SINE Alu -24 288 1 300 300 104 16 chrX 57059403 57059648 -119914492 - L1MC/D LINE L1 -348 5773 5599 7069 21 0 1 chrX 57059659 57060480 -119913660 + L1PA4 LINE L1 5332 6151 -4 3533 168 34 39 chrX 57060835 57061578 -119912562 - L1MC4 LINE L1 0 8042 7304 1997 134 33 27 chrX 57061578 57061914 -119912226 + MSTC LTR MaLR 1 338 -90 1130 247 79 32 chrX 57061920 57062260 -119911880 + MST-int LTR MaLR 604 959 -692 13409 25 0 0 chrX 57062266 57063846 -119910294 - L1PA4 LINE L1 -1070 5076 3497 7398 34 7 0 chrX 57063847 57064906 -119909234 + L1PA4 LINE L1 5088 6152 -3 207 0 0 0 chrX 57064911 57064934 -119909206 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2297 224 132 16 chrX 57064951 57065566 -119908574 + MST-int LTR MaLR 966 1651 0 330 226 0 113 chrX 57065597 57065703 -119908437 + L2 LINE L2 2985 3078 -194 547 288 109 17 chrX 57065709 57066011 -119908129 + L1ME4a LINE L1 5356 5685 -436 258 262 214 0 chrX 57066031 57066115 -119908025 - L2 LINE L2 -21 3292 3191 698 241 241 12 chrX 57066119 57066464 -119907676 + L1ME4a LINE L1 5693 6116 -5 469 89 16 0 chrX 57066509 57066583 -119907557 + L1MA8 LINE L1 5902 5978 -313 1405 208 35 0 chrX 57068300 57068588 -119905552 + L1ME2 LINE L1 5533 5830 -334 7636 191 61 29 chrX 57068600 57072514 -119901626 - L1 LINE L1 -2346 4442 14 6802 198 160 30 chrX 57073836 57074317 -119899823 + L1MD3 LINE L1 5852 6269 -1726 1092 205 67 0 chrX 57074317 57074527 -119899613 + MER58A DNA MER1_type 1 224 0 6802 198 160 30 chrX 57074527 57074736 -119899404 + L1MD3 LINE L1 6269 6449 -1546 237 83 0 0 chrX 57074736 57074772 -119899368 + (TG)n Simple_repeat Simple_repeat 2 37 0 6802 198 160 30 chrX 57074772 57075810 -119898330 + L1MD3 LINE L1 6449 7852 -143 2133 126 7 3 chrX 57075810 57076111 -119898029 - AluSx SINE Alu -10 302 1 6802 198 160 30 chrX 57076111 57076277 -119897863 + L1MD3 LINE L1 7852 7995 0 526 190 33 8 chrX 57076941 57077062 -119897078 + L1MC4a LINE L1 7117 7240 -568 180 351 0 11 chrX 57077707 57077801 -119896339 + L2 LINE L2 2267 2359 -955 2573 31 7 0 chrX 57078369 57078662 -119895478 + AluY SINE Alu 1 295 -16 1860 137 7 29 chrX 57078855 57079161 -119894979 - AluJo SINE Alu -11 301 3 2765 7 0 0 chrX 57079192 57079491 -119894649 + AluYa5 SINE Alu 1 299 -12 509 294 78 17 chrX 57080396 57080627 -119893513 + MIR SINE MIR 5 249 -13 493 175 204 29 chrX 57081351 57081488 -119892652 + MER5A DNA MER1_type 29 189 0 2410 74 3 16 chrX 57082703 57083034 -119891106 - AluSp SINE Alu 0 313 1 1905 138 31 3 chrX 57083275 57083565 -119890575 + AluJo SINE Alu 1 298 -14 181 359 29 29 chrX 57084117 57084282 -119889858 + L2 LINE L2 1967 2134 -1180 2358 88 0 0 chrX 57084282 57084577 -119889563 - AluSg SINE Alu -15 295 1 181 359 29 29 chrX 57084577 57084617 -119889523 + L2 LINE L2 2133 2172 -1142 194 323 108 23 chrX 57084868 57084998 -119889142 + L2 LINE L2 2359 2499 -815 217 279 8 47 chrX 57086535 57086664 -119887476 + L2 LINE L2 1314 1437 -1877 847 302 124 61 chrX 57086671 57087144 -119886996 + L2 LINE L2 2086 2528 -744 2279 91 7 3 chrX 57087144 57087440 -119886700 - AluSx SINE Alu -15 297 1 847 302 124 61 chrX 57087440 57087826 -119886314 + L2 LINE L2 2528 3012 -260 227 300 33 0 chrX 57087866 57087926 -119886214 + L2 LINE L2 3244 3305 -8 540 318 31 97 chrX 57088247 57088637 -119885503 + L2 LINE L2 2909 3272 0 221 190 86 0 chrX 57089279 57089337 -119884803 + L2 LINE L2 2193 2255 -1059 26 64 0 0 chrX 57090331 57090378 -119883762 + AT_rich Low_complexity Low_complexity 1 47 0 1959 184 121 28 chrX 57090458 57090920 -119883220 + MLT1D LTR MaLR 1 505 0 291 157 0 0 chrX 57091001 57091052 -119883088 + (TG)n Simple_repeat Simple_repeat 2 52 0 371 248 0 69 chrX 57092241 57092342 -119881798 - L2 LINE L2 -1 3271 3178 24 0 0 0 chrX 57092666 57092690 -119881450 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 57093320 57093349 -119880791 + AT_rich Low_complexity Low_complexity 1 29 0 436 215 62 35 chrX 57093566 57093710 -119880430 - L1ME4a LINE L1 -7 6114 5967 288 302 91 21 chrX 57093914 57094334 -119879806 - L1M4 LINE L1 -798 5348 4900 581 269 91 69 chrX 57094486 57094724 -119879416 + L1ME LINE L1 5391 5641 -480 2152 105 6 26 chrX 57094724 57095037 -119879103 - AluSq SINE Alu -6 307 1 581 269 91 69 chrX 57095037 57095148 -119878992 + L1ME LINE L1 5641 5748 -373 237 219 62 16 chrX 57095691 57095755 -119878385 + L1ME LINE L1 533 599 -5471 22 0 0 0 chrX 57095826 57095848 -119878292 + AT_rich Low_complexity Low_complexity 1 22 0 2427 210 14 16 chrX 57095879 57095897 -119878243 + L1MB3 LINE L1 4104 4121 -2025 641 194 73 0 chrX 57095897 57096021 -119878119 - FLAM_A SINE Alu 0 133 1 2427 210 14 16 chrX 57096021 57096582 -119877558 + L1MB3 LINE L1 4121 4682 -1464 3428 137 47 32 chrX 57096585 57097241 -119876899 + L1MB3 LINE L1 5504 6169 -14 228 267 27 0 chrX 57097696 57097771 -119876369 - HsTC2 DNA Tc2 -1821 77 1 209 234 16 0 chrX 57097774 57097838 -119876302 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 281 335 125 5 chrX 57098617 57098820 -119875320 + MIR SINE MIR 37 262 0 569 246 15 15 chrX 57099232 57099366 -119874774 - L2 LINE L2 0 3313 3180 270 382 44 22 chrX 57100334 57100562 -119873578 - L2 LINE L2 -379 2935 2703 1351 191 27 99 chrX 57100756 57101128 -119873012 - MLT1A1 LTR MaLR -20 345 1 407 212 82 35 chrX 57101363 57101541 -119872599 - MIR SINE MIR 0 262 26 307 300 44 62 chrX 57101603 57102100 -119872040 + L1ME LINE L1 2065 2552 -3528 4185 205 108 78 chrX 57102433 57104012 -119870128 + L1MC/D LINE L1 18 2270 -4451 1620 105 17 17 chrX 57104012 57104251 -119869889 - AluSg/x SINE Alu -1 311 73 4185 205 108 78 chrX 57104251 57104805 -119869335 + L1MC/D LINE L1 2270 2806 -3915 358 261 134 36 chrX 57104935 57105211 -119868929 + L1MC/D LINE L1 4792 5094 -1446 905 298 67 28 chrX 57105313 57105407 -119868733 + L1MC/D LINE L1 5356 5445 -1420 2058 106 28 0 chrX 57105407 57105691 -119868449 + AluSx SINE Alu 1 292 -20 273 109 0 0 chrX 57105691 57105737 -119868403 + (TA)n Simple_repeat Simple_repeat 2 47 0 905 298 67 28 chrX 57105737 57106160 -119867980 + L1MC/D LINE L1 5445 5914 -951 2451 57 0 38 chrX 57106160 57106477 -119867663 + AluY SINE Alu 1 305 -6 905 298 67 28 chrX 57106477 57106686 -119867454 + L1MC/D LINE L1 5914 6113 -752 290 278 56 0 chrX 57106856 57106928 -119867212 + MIR SINE MIR 184 259 -3 1969 121 30 24 chrX 57107411 57107742 -119866398 + MER44D DNA MER2_type 4 606 -3 401 192 83 8 chrX 57107953 57108073 -119866067 - L1MC4 LINE L1 0 8042 7914 182 204 0 20 chrX 57108077 57108126 -119866014 + CT-rich Low_complexity Low_complexity 4 51 0 281 186 21 31 chrX 57108136 57108233 -119865907 + (CATATA)n Simple_repeat Simple_repeat 4 99 0 1279 227 70 54 chrX 57108259 57108360 -119865780 - L1MC4 LINE L1 -173 7869 7771 1613 137 0 0 chrX 57108360 57108587 -119865553 + AluSx SINE Alu 38 264 -48 3666 126 12 21 chrX 57108587 57109192 -119864948 + L1PA15 LINE L1 5567 6165 0 1279 227 70 54 chrX 57109192 57109516 -119864624 - L1MC4 LINE L1 -270 7772 7436 2568 188 30 13 chrX 57109563 57110081 -119864059 + MER54A LTR ERVL 79 901 0 894 212 50 36 chrX 57110081 57110499 -119863641 - L1MC4 LINE L1 -601 7441 6945 32 0 0 0 chrX 57110863 57110895 -119863245 + AT_rich Low_complexity Low_complexity 1 32 0 435 278 46 0 chrX 57112841 57112949 -119861191 + L2 LINE L2 3159 3271 -1 458 228 59 0 chrX 57113640 57113741 -119860399 + L2 LINE L2 3207 3313 0 370 299 95 0 chrX 57114349 57114486 -119859654 + MIR SINE MIR 36 185 -77 553 301 135 9 chrX 57115629 57115858 -119858282 + MIR SINE MIR 5 262 0 224 231 77 31 chrX 57115956 57116021 -119858119 - MIR SINE MIR -6 256 189 1031 209 14 0 chrX 57116097 57116308 -119857832 - LTR52 LTR ERVL -3 418 205 5801 166 15 133 chrX 57116334 57116753 -119857387 - L1 LINE L1 -2441 5124 4657 1210 185 0 19 chrX 57116753 57116969 -119857171 - AluJb SINE Alu -14 298 87 5801 166 15 133 chrX 57116969 57117916 -119856224 - L1 LINE L1 -2908 4657 3600 1699 169 7 10 chrX 57117916 57118206 -119855934 - AluJo SINE Alu -23 289 1 5801 166 15 133 chrX 57118206 57118493 -119855647 - L1 LINE L1 -3965 3600 3501 749 67 10 0 chrX 57118493 57118597 -119855543 + (TTCC)n Simple_repeat Simple_repeat 3 107 0 5801 166 15 133 chrX 57118597 57118737 -119855403 - L1 LINE L1 -4064 3501 3346 2114 233 81 3 chrX 57118760 57119356 -119854784 - L1 LINE L1 -4276 3289 2648 205 378 43 16 chrX 57119356 57119541 -119854599 + L2 LINE L2 2319 2508 -806 2565 214 64 61 chrX 57119893 57120709 -119853431 - L1MC4 LINE L1 -19 8023 7206 279 0 0 0 chrX 57120879 57120910 -119853230 + (TG)n Simple_repeat Simple_repeat 2 32 0 762 285 53 12 chrX 57120965 57121063 -119853077 - L1MC4 LINE L1 -1867 5941 5848 1296 261 132 30 chrX 57121063 57121603 -119852537 - MLT1G1 LTR MaLR 0 595 1 762 285 53 12 chrX 57121603 57121827 -119852313 - L1MC4 LINE L1 -1960 5848 5606 2294 238 29 67 chrX 57121829 57122649 -119851491 - L1ME1 LINE L1 -43 6123 5335 1100 259 36 89 chrX 57122073 57122738 -119851402 - L1MC4a LINE L1 -1924 5884 5255 * 4716 136 4 4 chrX 57123524 57124305 -119849835 + L1MA4 LINE L1 5514 6294 -6 21 36 0 0 chrX 57124313 57124341 -119849799 + AT_rich Low_complexity Low_complexity 1 28 0 4347 136 67 1 chrX 57125697 57126379 -119847761 + L1M1 LINE L1 445 1171 -6394 1778 102 0 16 chrX 57126380 57126624 -119847516 + HSMAR1 DNA Mariner 278 517 -770 7356 82 10 11 chrX 57126624 57127715 -119846425 + L1MA3 LINE L1 5215 6305 0 321 140 0 0 chrX 57127887 57127944 -119846196 + (TG)n Simple_repeat Simple_repeat 1 57 0 1638 103 4 0 chrX 57128066 57128308 -119845832 + L1MA4A LINE L1 6057 6299 -4 659 313 14 42 chrX 57129846 57130060 -119844080 - MIR SINE MIR -6 256 49 502 182 51 82 chrX 57131793 57131891 -119842249 - MER5A DNA MER1_type -83 106 4 2966 112 47 9 chrX 57132590 57133054 -119841086 + MER31A LTR ERV1 4 485 0 626 178 147 25 chrX 57133417 57133574 -119840566 - FAM SINE Alu -4 45 1 509 264 101 0 chrX 57134701 57134830 -119839310 + MER5A DNA MER1_type 48 189 0 382 210 260 0 chrX 57134854 57134954 -119839186 - L2 LINE L2 -4 3309 3184 3487 158 28 8 chrX 57135549 57136422 -119837718 - L1MB8 LINE L1 -295 5883 4999 2581 196 64 19 chrX 57136432 57136551 -119837589 - MER68 LTR ERV1 -7 555 443 1491 79 9 0 chrX 57136551 57136765 -119837375 + L1MA3 LINE L1 6090 6305 0 2581 196 64 19 chrX 57136765 57137176 -119836964 - MER68 LTR ERV1 -119 443 1 2485 203 70 20 chrX 57137182 57137827 -119836313 - L1MB8 LINE L1 -1158 4988 4312 * 5162 136 6 6 chrX 57137820 57138656 -119835484 - L1MB1 LINE L1 0 6168 5333 4418 205 48 98 chrX 57138657 57139476 -119834664 - L1MB8 LINE L1 -1814 4332 3530 590 184 0 0 chrX 57139476 57139608 -119834532 - FLAM_A SINE Alu 0 143 12 4418 205 48 98 chrX 57139608 57140370 -119833770 - L1MB8 LINE L1 -2616 3530 2732 400 132 0 40 chrX 57140367 57140443 -119833697 + L1M4b LINE L1 847 919 -5940 * 234 377 0 0 chrX 57140460 57140566 -119833574 - L1ME LINE L1 -515 5606 5501 2476 53 0 17 chrX 57140648 57140947 -119833193 + AluY SINE Alu 1 294 -17 472 252 82 68 chrX 57142149 57142355 -119831785 - L2 LINE L2 -45 3268 3060 37848 83 10 6 chrX 57142715 57148834 -119825306 - L1PA6 LINE L1 0 6154 12 2299 46 0 0 chrX 57149254 57149537 -119824603 + L1PA5 LINE L1 5872 6154 0 315 306 36 45 chrX 57150438 57150549 -119823591 + MER5B DNA MER1_type 63 172 -6 358 291 89 44 chrX 57150925 57151106 -119823034 - MIR SINE MIR -56 206 20 504 352 15 0 chrX 57151361 57151557 -119822583 - L1ME LINE L1 -376 5745 5547 24 0 0 0 chrX 57152879 57152903 -119821237 + AT_rich Low_complexity Low_complexity 1 24 0 294 29 0 0 chrX 57154516 57154551 -119819589 + (TG)n Simple_repeat Simple_repeat 2 36 0 32 26 0 0 chrX 57155573 57155612 -119818528 + AT_rich Low_complexity Low_complexity 1 39 0 2271 77 0 11 chrX 57155730 57156095 -119818045 - AluSx SINE Alu 0 362 1 28 0 0 0 chrX 57156484 57156512 -119817628 + AT_rich Low_complexity Low_complexity 1 28 0 525 242 73 8 chrX 57156566 57156690 -119817450 - MER94 DNA DNA -2 132 1 737 272 94 9 chrX 57156855 57157079 -119817061 - MIR SINE MIR -3 259 17 227 233 55 14 chrX 57157322 57157395 -119816745 - MIR SINE MIR -138 124 49 210 314 174 17 chrX 57157902 57158074 -119816066 + L2 LINE L2 1668 1866 -1448 1207 291 34 22 chrX 57158256 57158672 -119815468 - L2 LINE L2 -589 2725 2305 2292 47 44 13 chrX 57159529 57159827 -119814313 + AluY SINE Alu 1 307 -4 222 293 172 10 chrX 57159827 57159926 -119814214 + L2 LINE L2 3156 3270 -2 343 327 122 6 chrX 57160132 57160288 -119813852 + MIR SINE MIR 25 198 -64 207 0 0 0 chrX 57160882 57160905 -119813235 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chrX 57161044 57161064 -119813076 + (T)n Simple_repeat Simple_repeat 1 20 0 2486 73 3 6 chrX 57162421 57162735 -119811405 + AluSq SINE Alu 1 313 0 2563 60 0 0 chrX 57163065 57163367 -119810773 + AluY SINE Alu 1 302 -9 1269 57 13 6 chrX 57163666 57163823 -119810317 - AluSc SINE Alu -14 295 138 487 248 58 39 chrX 57164318 57164500 -119809640 - MER5A DNA MER1_type 0 189 4 482 290 136 6 chrX 57164794 57164956 -119809184 - MIR SINE MIR -48 214 32 434 256 144 39 chrX 57165929 57166109 -119808031 + MIR3 SINE MIR 5 203 -5 528 279 55 24 chrX 57166570 57166735 -119807405 + MIR3 SINE MIR 16 185 -23 2176 102 3 0 chrX 57167113 57167425 -119806715 - AluSx SINE Alu 0 313 1 237 182 0 0 chrX 57167920 57167975 -119806165 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 854 150 0 15 chrX 57167979 57168112 -119806028 - FLAM_C SINE Alu -2 131 1 2031 145 7 7 chrX 57168114 57168424 -119805716 - AluJo SINE Alu -2 310 1 224 244 0 0 chrX 57169057 57169102 -119805038 - L2 LINE L2 0 3313 3269 278 309 45 0 chrX 57169227 57169337 -119804803 + L1ME4a LINE L1 5548 5662 -459 306 298 107 36 chrX 57169427 57169652 -119804488 + L1M3 LINE L1 4687 4927 -1219 399 177 88 44 chrX 57169994 57170107 -119804033 + L1M3 LINE L1 5317 5429 -692 2282 78 0 4 chrX 57170120 57170401 -119803739 - AluSg SINE Alu -22 288 9 260 319 31 18 chrX 57170493 57170656 -119803484 + L1ME LINE L1 5606 5770 -351 1664 160 35 3 chrX 57170711 57171020 -119803120 - AluJo SINE Alu 0 312 1 2431 91 0 0 chrX 57171107 57171415 -119802725 + AluSx SINE Alu 1 308 -4 34 55 0 0 chrX 57171547 57171602 -119802538 + AT_rich Low_complexity Low_complexity 1 55 0 13007 135 41 85 chrX 57171602 57173706 -119800434 - L1PB1 LINE L1 0 6867 4671 10403 46 3 106 chrX 57173706 57175251 -119798889 - SVA Other Other 0 1386 1 13007 135 41 85 chrX 57175251 57177067 -119797073 - L1PB1 LINE L1 -2196 4671 2776 2167 80 45 0 chrX 57177067 57177354 -119796786 - AluY SINE Alu -11 300 1 13007 135 41 85 chrX 57177354 57179898 -119794242 - L1PB1 LINE L1 -4091 2776 636 1241 137 5 0 chrX 57179900 57180097 -119794043 - L1PB1 LINE L1 -6663 200 3 239 263 81 0 chrX 57180291 57180390 -119793750 + L1P LINE L1 5320 5426 -725 458 178 0 0 chrX 57180395 57180466 -119793674 + Tigger2 DNA MER2_type 1 71 -2647 268 207 103 0 chrX 57180466 57180524 -119793616 - MER2 DNA MER2_type 0 345 282 * 1007 216 0 0 chrX 57180501 57180672 -119793468 - MER8 DNA MER2_type -62 177 7 334 284 81 83 chrX 57180739 57180945 -119793195 + L1ME4a LINE L1 5634 5841 -280 2114 99 0 7 chrX 57180945 57181248 -119792892 + AluSc SINE Alu 1 301 0 334 284 81 83 chrX 57181248 57181435 -119792705 + L1ME4a LINE L1 5841 6027 -94 225 149 0 21 chrX 57181436 57181483 -119792657 + LTR66 LTR ERVL 393 438 -172 1643 159 13 67 chrX 57181497 57181659 -119792481 - AluJo SINE Alu -15 297 159 2279 100 0 10 chrX 57181659 57181958 -119792182 - AluSq SINE Alu -15 298 3 1643 159 13 67 chrX 57181958 57182109 -119792031 - AluJo SINE Alu -153 159 1 23 33 0 0 chrX 57182191 57182221 -119791919 + AT_rich Low_complexity Low_complexity 1 30 0 258 331 65 8 chrX 57182422 57182546 -119791594 - L2 LINE L2 -462 2852 2722 218 260 0 0 chrX 57182603 57182653 -119791487 - L2 LINE L2 -2 3270 3221 306 0 0 0 chrX 57183175 57183209 -119790931 + (TG)n Simple_repeat Simple_repeat 1 34 0 276 317 12 0 chrX 57183606 57183688 -119790452 - MER112 DNA MER1_type 0 260 178 315 130 0 0 chrX 57183724 57183778 -119790362 + (TG)n Simple_repeat Simple_repeat 2 55 0 240 300 100 44 chrX 57183806 57183896 -119790244 + MIR SINE MIR 1 95 -167 192 346 24 24 chrX 57183905 57184032 -119790108 - L2 LINE L2 -321 2951 2825 201 325 199 35 chrX 57184263 57184666 -119789474 - L2 LINE L2 -527 2787 2319 560 196 22 0 chrX 57184748 57184840 -119789300 - MER5A DNA MER1_type -83 106 13 499 341 51 29 chrX 57184850 57185161 -119788979 - L2 LINE L2 -1034 2280 1963 1013 183 21 64 chrX 57185166 57185401 -119788739 + MER106A DNA MER1_type 1 225 -11 1222 133 88 0 chrX 57185404 57185585 -119788555 + AluJo SINE Alu 86 282 -30 212 0 36 0 chrX 57185585 57185613 -119788527 + (GA)n Simple_repeat Simple_repeat 2 30 0 357 275 100 17 chrX 57185953 57186073 -119788067 - MER5B DNA MER1_type -20 158 29 274 343 93 0 chrX 57185958 57186098 -119788042 + MER5A DNA MER1_type 37 189 0 * 466 302 91 44 chrX 57186104 57186422 -119787718 - L2 LINE L2 -553 2761 2429 719 240 148 13 chrX 57186442 57186671 -119787469 - MIR SINE MIR 0 262 3 406 329 101 46 chrX 57186730 57187424 -119786716 - L2 LINE L2 -1019 2295 1564 760 182 38 6 chrX 57188779 57188938 -119785202 + MIR SINE MIR 98 261 -1 326 242 0 44 chrX 57190526 57190617 -119783523 + MER5A DNA MER1_type 98 184 -5 1070 226 48 0 chrX 57191174 57191422 -119782718 + MIR SINE MIR 1 260 -2 204 371 76 24 chrX 57192091 57192301 -119781839 - L2 LINE L2 -697 2617 2397 2411 241 77 42 chrX 57192408 57193344 -119780796 + L2 LINE L2 2313 3288 -25 203 196 22 0 chrX 57193533 57193579 -119780561 + L2 LINE L2 3263 3309 -4 221 258 0 65 chrX 57193911 57193973 -119780167 + L2 LINE L2 3215 3272 0 1887 108 41 65 chrX 57194684 57194749 -119779391 - L1MC3 LINE L1 0 7785 7720 2337 59 0 35 chrX 57194749 57195074 -119779066 + AluSc SINE Alu 1 315 0 1887 108 41 65 chrX 57195074 57195376 -119778764 - L1MC3 LINE L1 -65 7720 7426 2325 113 0 0 chrX 57195805 57196114 -119778026 + AluSx SINE Alu 1 309 -3 266 348 0 0 chrX 57197113 57197182 -119776958 + tRNA-Ile-ATT tRNA tRNA 6 74 -3 4222 193 37 30 chrX 57199586 57199680 -119774460 - L1M4 LINE L1 -1635 4511 4419 2008 147 7 0 chrX 57199680 57199972 -119774168 + AluSx SINE Alu 1 294 -18 219 69 0 0 chrX 57199972 57200001 -119774139 + (TA)n Simple_repeat Simple_repeat 1 29 0 4222 193 37 30 chrX 57200001 57200907 -119773233 - L1M4 LINE L1 -1726 4420 3503 3922 180 24 12 chrX 57200889 57201685 -119772455 + L1MB7 LINE L1 4610 5421 -743 * 822 127 8 24 chrX 57201689 57201815 -119772325 + FRAM SINE Alu 45 168 -8 3023 160 30 43 chrX 57201815 57201895 -119772245 + L1MB7 LINE L1 5485 5565 -619 1519 194 0 41 chrX 57201895 57202223 -119771917 + AluJo SINE Alu 1 316 0 3023 160 30 43 chrX 57202223 57202752 -119771388 + L1MB7 LINE L1 5565 6087 -97 482 301 84 62 chrX 57203095 57203557 -119770583 + L2 LINE L2 2743 3262 -10 222 37 0 0 chrX 57203590 57203617 -119770523 + (CAGA)n Simple_repeat Simple_repeat 2 28 0 1832 139 155 11 chrX 57204166 57204540 -119769600 - MSTA LTR MaLR 0 428 1 259 221 15 88 chrX 57204586 57204617 -119769523 - L2 LINE L2 0 3313 3288 2414 165 30 35 chrX 57204617 57205125 -119769015 - MLT1D LTR MaLR 0 505 1 259 221 15 88 chrX 57205125 57205161 -119768979 - L2 LINE L2 -25 3288 3251 273 352 50 38 chrX 57205166 57205325 -119768815 + L2 LINE L2 3110 3270 -2 304 333 110 36 chrX 57205420 57205639 -119768501 - L2 LINE L2 -8 3264 3030 641 279 134 17 chrX 57205703 57206001 -119768139 - L3 LINE CR1 -58 1519 1187 422 274 105 0 chrX 57205986 57206110 -119768030 - L2 LINE L2 0 3272 3136 * 2362 99 0 0 chrX 57206213 57206516 -119767624 + AluSq SINE Alu 1 303 -10 325 245 41 71 chrX 57206549 57206647 -119767493 - L2 LINE L2 0 3272 3178 727 336 96 48 chrX 57206719 57207658 -119766482 - L2 LINE L2 -21 3251 2251 620 291 113 86 chrX 57207688 57208214 -119765926 - L2 LINE L2 -2 3270 2741 737 202 0 16 chrX 57208214 57208338 -119765802 - FLAM_A SINE Alu -11 122 1 620 291 113 86 chrX 57208338 57208404 -119765736 - L2 LINE L2 -531 2741 2678 386 189 255 19 chrX 57208408 57208445 -119765695 + L2 LINE L2 3183 3210 -103 2338 45 0 7 chrX 57208445 57208732 -119765408 - AluY SINE Alu 0 311 27 386 189 255 19 chrX 57208732 57208800 -119765340 + L2 LINE L2 3210 3313 0 287 367 55 0 chrX 57209002 57209111 -119765029 - L2 LINE L2 -22 3250 3136 969 150 12 0 chrX 57209142 57209302 -119764838 + MER1B DNA MER1_type 69 230 -67 398 173 49 0 chrX 57209300 57209381 -119764759 + MER1B DNA MER1_type 249 333 0 * 232 292 22 11 chrX 57209712 57209801 -119764339 + L2 LINE L2 2513 2602 -712 556 197 111 0 chrX 57209808 57209925 -119764215 + MER117 DNA MER1_type 68 197 0 316 305 122 8 chrX 57209979 57210110 -119764030 - L2 LINE L2 -954 2360 2215 1114 216 28 0 chrX 57210110 57210328 -119763812 - MER58A DNA MER1_type 0 224 1 848 251 23 18 chrX 57210358 57210577 -119763563 + MIR SINE MIR 33 252 -10 392 267 124 32 chrX 57210623 57210840 -119763300 - L2 LINE L2 -1093 2221 1985 984 282 80 33 chrX 57210857 57211407 -119762733 + L1MC4 LINE L1 5314 5889 -1919 322 214 167 0 chrX 57211560 57211644 -119762496 + MER63 DNA MER1_type 2 725 -337 268 293 301 12 chrX 57211729 57211978 -119762162 - L2 LINE L2 -1315 1999 1679 328 289 18 26 chrX 57212056 57212170 -119761970 - MIR SINE MIR -77 185 73 1227 205 78 0 chrX 57212631 57212914 -119761226 - L1MC4 LINE L1 -1040 7002 6698 2246 245 85 20 chrX 57212998 57213893 -119760247 + L1MC4 LINE L1 7090 8042 0 2956 159 56 18 chrX 57213938 57214389 -119759751 + L1MB8 LINE L1 4902 5335 -849 2013 135 0 33 chrX 57214389 57214693 -119759447 + AluJb SINE Alu 1 294 -18 2956 159 56 18 chrX 57214693 57215186 -119758954 + L1MB8 LINE L1 5335 5880 -304 * 3335 147 62 27 chrX 57215179 57215846 -119758294 + L1MC2 LINE L1 5624 6313 -31 1279 198 15 28 chrX 57215863 57216187 -119757953 + L1MB8 LINE L1 5858 6177 -1 3677 165 53 8 chrX 57216262 57217297 -119756843 + L1M4 LINE L1 4508 5596 -588 571 250 131 0 chrX 57217345 57217505 -119756635 - L2 LINE L2 -410 2904 2724 187 337 30 66 chrX 57217538 57217704 -119756436 - L2 LINE L2 -2020 1294 1135 800 270 53 76 chrX 57218165 57218677 -119755463 + L2 LINE L2 2708 3191 -122 231 313 38 12 chrX 57218694 57218774 -119755366 + L2 LINE L2 3142 3223 -49 2725 149 58 0 chrX 57218881 57219378 -119754762 + L1MA9 LINE L1 5774 6299 -13 209 333 51 13 chrX 57219505 57219583 -119754557 - L3 LINE CR1 -6 1571 1491 2134 137 0 7 chrX 57220661 57220960 -119753180 + AluSx SINE Alu 1 297 -15 634 296 83 74 chrX 57220987 57221581 -119752559 - L2 LINE L2 -37 3235 2636 1426 155 42 19 chrX 57224546 57224856 -119749284 - L1MB1 LINE L1 -152 6016 5700 1118 161 0 71 chrX 57224812 57224880 -119749260 + L1MA10 LINE L1 6064 6135 -199 * 2166 116 3 26 chrX 57224880 57225183 -119748957 + AluSx SINE Alu 1 296 -16 1118 161 0 71 chrX 57225183 57225381 -119748759 + L1MA10 LINE L1 6135 6311 -23 1824 167 66 15 chrX 57225390 57225786 -119748354 - MSTC LTR MaLR -12 416 1 1016 228 0 5 chrX 57225811 57226022 -119748118 + MIR SINE MIR 53 262 0 425 104 15 0 chrX 57226575 57226642 -119747498 - MER92C LTR ERV1 0 554 487 524 222 4 30 chrX 57226709 57226898 -119747242 - MER92B LTR ERV1 -372 182 1 1934 146 14 3 chrX 57227140 57227428 -119746712 + AluJb SINE Alu 1 291 -21 1995 159 29 65 chrX 57227602 57228049 -119746091 + MSTB1 LTR MaLR 2 432 0 409 252 0 0 chrX 57228284 57228395 -119745745 - MER31-int LTR ERV1 -467 4469 4359 594 257 33 37 chrX 57228435 57228495 -119745645 - LTR37A LTR ERV1 -182 244 185 1378 167 143 4 chrX 57228495 57228753 -119745387 - AluJo SINE Alu -18 294 1 594 257 33 37 chrX 57228753 57228937 -119745203 - LTR37A LTR ERV1 -241 185 1 4337 159 15 67 chrX 57229004 57229725 -119744415 + L1MB5 LINE L1 5113 5774 -400 192 40 0 0 chrX 57229725 57229750 -119744390 + (TG)n Simple_repeat Simple_repeat 1 25 0 4337 159 15 67 chrX 57229750 57230124 -119744016 + L1MB5 LINE L1 5774 6166 -8 3131 215 45 75 chrX 57230150 57231199 -119742941 - MER31-int LTR ERV1 -749 4187 3171 2317 92 0 13 chrX 57231342 57231648 -119742492 - AluY SINE Alu -9 302 1 1675 109 8 0 chrX 57231668 57231916 -119742224 - L1PA14 LINE L1 -9 6152 5903 13815 162 10 4 chrX 57231923 57235010 -119739130 - L1PA14 LINE L1 -425 5736 2634 2498 119 40 35 chrX 57235045 57235473 -119738667 - MSTB1 LTR MaLR 0 432 3 512 264 0 85 chrX 57235873 57236108 -119738032 - MER31-int LTR ERV1 -1869 3067 2853 439 257 52 14 chrX 57236325 57236535 -119737605 - MER31-int LTR ERV1 -3021 1915 1698 467 226 6 54 chrX 57236692 57236860 -119737280 - MER31-int LTR ERV1 -3490 1446 1287 557 193 0 21 chrX 57236910 57237050 -119737090 - MER31-int LTR ERV1 -3650 1286 1150 606 193 16 30 chrX 57237203 57237389 -119736751 - MER92B LTR ERV1 -370 184 1 230 354 10 21 chrX 57237501 57237597 -119736543 + L2 LINE L2 3122 3216 -56 359 179 40 220 chrX 57240237 57240300 -119733840 + MER58C DNA MER1_type 33 106 -2314 1572 201 31 10 chrX 57240300 57240594 -119733546 + AluJo SINE Alu 1 300 -12 359 179 40 220 chrX 57240594 57240753 -119733387 + MER58C DNA MER1_type 106 215 0 639 213 109 23 chrX 57240761 57240935 -119733205 - MER5A DNA MER1_type 0 189 1 375 294 60 56 chrX 57241219 57241488 -119732652 + L2 LINE L2 3042 3311 -2 357 204 142 9 chrX 57241914 57242099 -119732041 + L1MC/D LINE L1 5345 5569 -722 7627 25 0 0 chrX 57243533 57244810 -119729330 - L1PA3 LINE L1 -11 6144 4868 938 176 6 29 chrX 57247595 57247765 -119726375 - AluJb SINE Alu -16 296 131 1974 72 79 4 chrX 57248151 57248449 -119725691 - AluY SINE Alu 0 318 1 404 207 7 35 chrX 57248601 57248746 -119725394 + T-rich Low_complexity Low_complexity 5 145 0 22 0 0 0 chrX 57250244 57250266 -119723874 + AT_rich Low_complexity Low_complexity 1 22 0 2271 180 36 2 chrX 57250659 57251071 -119723069 - MSTB LTR MaLR 0 426 1 393 231 94 145 chrX 57251313 57251568 -119722572 - MIR SINE MIR -20 242 1 1975 157 0 23 chrX 57252378 57252683 -119721457 + AluSx SINE Alu 1 298 -14 1663 130 49 24 chrX 57252905 57253211 -119720929 + THE1C LTR MaLR 1 339 -25 5424 57 7 0 chrX 57253211 57253895 -119720245 - L1PA8 LINE L1 -6 6166 5478 1663 130 49 24 chrX 57253895 57253922 -119720218 + THE1C LTR MaLR 339 364 0 2256 96 7 10 chrX 57255332 57255633 -119718507 + AluSx SINE Alu 1 300 -12 206 255 20 0 chrX 57257505 57257556 -119716584 - L2 LINE L2 0 3313 3262 * 615 266 141 0 chrX 57257525 57257724 -119716416 - MIR SINE MIR -15 247 21 264 30 0 0 chrX 57258440 57258473 -119715667 + (TTGG)n Simple_repeat Simple_repeat 2 34 0 230 259 0 17 chrX 57259890 57259948 -119714192 - L2 LINE L2 0 3313 3257 323 387 43 12 chrX 57260237 57260490 -119713650 - L2 LINE L2 -339 2975 2715 1076 206 32 24 chrX 57260626 57260879 -119713261 + MIR SINE MIR 5 259 -3 508 352 74 46 chrX 57260901 57261546 -119712594 - L2 LINE L2 -230 3042 2376 4281 168 39 32 chrX 57261592 57261922 -119712218 + L1MB8 LINE L1 4625 4951 -1227 2590 4 0 0 chrX 57261922 57262235 -119711905 + AluYa5 SINE Alu 1 313 0 4281 168 39 32 chrX 57262235 57263444 -119710696 + L1MB8 LINE L1 4951 6172 -6 239 326 61 15 chrX 57263517 57263649 -119710491 - L2 LINE L2 -1332 1982 1845 521 15 15 0 chrX 57264073 57264139 -119710001 + (TATG)n Simple_repeat Simple_repeat 2 68 0 2165 89 7 0 chrX 57264139 57264421 -119709719 - AluSx SINE Alu -28 284 1 190 233 0 0 chrX 57264550 57264593 -119709547 + L2 LINE L2 3263 3305 -8 1635 145 97 0 chrX 57264831 57265100 -119709040 + AluJo SINE Alu 1 295 -17 285 322 81 0 chrX 57265374 57265461 -119708679 + L2 LINE L2 3166 3259 -13 293 0 0 26 chrX 57265461 57265499 -119708641 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 3675 202 64 15 chrX 57266870 57267077 -119707063 - L1MD2 LINE L1 -3 6356 6161 306 0 0 0 chrX 57267077 57267111 -119707029 + (TG)n Simple_repeat Simple_repeat 2 35 0 3675 202 64 15 chrX 57267111 57267765 -119706375 - L1MD2 LINE L1 -198 6161 5453 454 345 44 55 chrX 57267778 57268053 -119706087 + L2 LINE L2 3000 3271 -1 219 210 16 65 chrX 57268139 57268201 -119705939 + L2 LINE L2 3197 3255 -17 216 147 0 0 chrX 57268702 57268736 -119705404 + L2 LINE L2 3192 3225 -88 287 203 14 0 chrX 57269369 57269438 -119704702 - L1ME1 LINE L1 -5 6161 6092 511 200 0 0 chrX 57271290 57271390 -119702750 - MER94 DNA DNA -34 100 1 212 256 0 67 chrX 57273758 57273848 -119700292 + MIR SINE MIR 173 256 -6 2269 110 0 3 chrX 57273851 57274152 -119699988 + AluSx SINE Alu 1 300 -12 330 292 43 103 chrX 57274471 57274656 -119699484 - L2 LINE L2 -10 3262 3089 463 355 227 17 chrX 57275002 57275528 -119698612 - L2 LINE L2 -5 3267 2622 225 94 0 0 chrX 57276275 57276307 -119697833 + (TG)n Simple_repeat Simple_repeat 2 33 0 3180 225 42 16 chrX 57276492 57277421 -119696719 - L1M4 LINE L1 -1553 4593 3641 2336 112 0 6 chrX 57277458 57277772 -119696368 - AluSx SINE Alu 0 312 1 689 232 5 21 chrX 57277772 57277966 -119696174 - L1MEc LINE L1 -4342 2054 1864 8664 196 42 10 chrX 57277976 57279937 -119694203 - Charlie1 DNA MER1_type -131 2630 606 3426 264 70 46 chrX 57280123 57280755 -119693385 - L1MEc LINE L1 -4541 1855 1239 569 14 27 0 chrX 57280755 57280828 -119693312 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1595 178 7 41 chrX 57280832 57281124 -119693016 - AluJo SINE Alu -30 282 1 3426 264 70 46 chrX 57281124 57281795 -119692345 - L1MEc LINE L1 -5159 1237 489 2253 92 0 0 chrX 57281795 57282115 -119692025 - AluSx SINE Alu 0 320 1 3426 264 70 46 chrX 57282115 57282590 -119691550 - L1MEc LINE L1 -5907 489 27 616 259 103 29 chrX 57282591 57282792 -119691348 - L1MDb LINE L1 -4746 1841 1656 2101 151 0 0 chrX 57282792 57283103 -119691037 + AluSx SINE Alu 1 311 -1 616 259 103 29 chrX 57283103 57283202 -119690938 - L1MDb LINE L1 -4931 1656 1566 1124 165 123 9 chrX 57283202 57283414 -119690726 - MER46A DNA MER2_type 0 236 1 616 259 103 29 chrX 57283414 57283705 -119690435 - L1MDb LINE L1 -5021 1566 1164 * 2921 210 57 8 chrX 57283699 57284424 -119689716 - L1MD2 LINE L1 -15 6278 5519 886 139 17 41 chrX 57284456 57284701 -119689439 - L1MD2 LINE L1 -3822 2258 2019 15465 79 8 1 chrX 57284708 57287596 -119686544 - L1PA7 LINE L1 -2 6152 3244 42288 36 1 1 chrX 57287601 57293695 -119680445 - L1PA3 LINE L1 -11 6144 52 15985 122 20 105 chrX 57293694 57297242 -119676898 - L1PA7 LINE L1 -2890 3256 12 * 5382 164 78 31 chrX 57297257 57297634 -119676506 - L1MD2 LINE L1 -4074 2006 1648 252 0 0 0 chrX 57297634 57297662 -119676478 + (TTCC)n Simple_repeat Simple_repeat 4 31 0 5382 164 78 31 chrX 57297662 57298305 -119675835 - L1MD2 LINE L1 -4432 1648 902 2159 138 0 0 chrX 57298305 57298603 -119675537 - AluSx SINE Alu -14 298 1 5382 164 78 31 chrX 57298603 57298962 -119675178 - L1MD2 LINE L1 -5178 902 561 345 271 25 16 chrX 57299027 57299149 -119674991 - L1MD2 LINE L1 -5853 217 95 248 184 20 20 chrX 57299156 57299205 -119674935 - L1MD2 LINE L1 -6019 51 3 565 214 186 0 chrX 57299398 57299543 -119674597 + MIR SINE MIR 91 262 0 674 266 72 22 chrX 57299939 57300161 -119673979 - MIR SINE MIR -10 252 20 245 257 143 0 chrX 57300219 57300289 -119673851 - MIR SINE MIR -10 252 173 268 277 50 20 chrX 57300329 57300430 -119673710 - MIR SINE MIR -3 259 156 1004 145 13 90 chrX 57300913 57301147 -119672993 - MER20 DNA MER1_type -3 216 1 1043 292 74 38 chrX 57301403 57302015 -119672125 - L2 LINE L2 0 3313 2687 1688 159 4 16 chrX 57302015 57302273 -119671867 + AluJo SINE Alu 1 255 -57 528 229 284 30 chrX 57302273 57302474 -119671666 + MIR SINE MIR 11 262 0 665 306 40 8 chrX 57302482 57302730 -119671410 - L2 LINE L2 -1292 2022 1767 346 247 0 0 chrX 57302771 57302852 -119671288 + L1ME LINE L1 5685 5765 -356 235 370 108 18 chrX 57302865 57303252 -119670888 - L2 LINE L2 -1967 1347 926 427 338 30 15 chrX 57303330 57303463 -119670677 + MIR SINE MIR 20 154 -108 216 97 0 0 chrX 57305254 57305285 -119668855 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 620 248 61 6 chrX 57305288 57305472 -119668668 - MIR SINE MIR -10 252 60 270 375 71 0 chrX 57305785 57305897 -119668243 - L2 LINE L2 0 3272 3153 2406 65 0 0 chrX 57305897 57306190 -119667950 + AluSg SINE Alu 1 293 -17 955 148 178 111 chrX 57306254 57306534 -119667606 - MER69 DNA AcHobo 0 2526 2213 4515 33 6 0 chrX 57306534 57307073 -119667067 - L1PA4 LINE L1 -3 6152 5611 955 148 178 111 chrX 57307073 57307169 -119666971 - MER69 DNA AcHobo -313 2213 2125 1288 217 35 49 chrX 57307171 57307540 -119666600 - MLT1A2 LTR MaLR -5 369 6 2928 232 69 8 chrX 57307541 57308326 -119665814 - MER69 DNA AcHobo -392 834 2 282 313 195 15 chrX 57308356 57308551 -119665589 - L2 LINE L2 -217 3055 2826 639 191 13 0 chrX 57308679 57308836 -119665304 + L1MB4 LINE L1 2568 2726 -3420 328 236 25 57 chrX 57308836 57308993 -119665147 + L1M4 LINE L1 9 160 -6382 3553 169 29 9 chrX 57309014 57309707 -119664433 + L1MB4 LINE L1 5429 6135 -45 3412 245 78 26 chrX 57309709 57311034 -119663106 + HAL1 LINE L1 1093 2486 -21 805 50 0 42 chrX 57311205 57311325 -119662815 - L1PA13 LINE L1 -2 6161 6047 351 324 56 40 chrX 57311447 57311771 -119662369 + L1M4 LINE L1 352 680 -5862 4851 193 85 30 chrX 57311850 57312765 -119661375 + L1M4 LINE L1 1380 2427 -4217 1660 125 101 0 chrX 57312765 57313062 -119661078 + L1PA11 LINE L1 5842 6168 -6 4851 193 85 30 chrX 57313062 57313687 -119660453 + L1M4 LINE L1 2427 3016 -3628 6136 217 43 22 chrX 57313707 57315553 -119658587 + L1M4 LINE L1 3664 5548 -1096 5333 177 36 4 chrX 57315558 57317162 -119656978 - L1P4 LINE L1 -476 5689 4034 573 198 8 0 chrX 57317166 57317292 -119656848 + L1MB4 LINE L1 6050 6176 -4 2755 231 35 31 chrX 57317320 57318314 -119655826 + L1M4 LINE L1 3214 4211 -2433 2502 234 23 28 chrX 57318359 57319154 -119654986 + L1M4 LINE L1 4665 5455 -1189 326 254 14 0 chrX 57319157 57319228 -119654912 + L1MC4 LINE L1 7971 8042 0 2539 98 22 5 chrX 57320386 57320754 -119653386 - THE1C LTR MaLR -1 374 1 717 0 0 0 chrX 57320838 57320920 -119653220 - L1PA4 LINE L1 -296 5859 5778 2083 32 0 0 chrX 57320924 57321172 -119652968 + L1PA4 LINE L1 5908 6155 0 240 125 0 0 chrX 57321934 57321974 -119652166 + L2 LINE L2 3261 3300 -13 201 302 111 0 chrX 57321983 57322046 -119652094 - MIR SINE MIR -156 106 37 347 220 0 99 chrX 57322348 57322439 -119651701 + L2 LINE L2 3191 3272 0 198 103 0 0 chrX 57322643 57322672 -119651468 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1149 268 134 34 chrX 57322672 57322965 -119651175 - L2 LINE L2 -15 3298 3036 2262 111 7 0 chrX 57322965 57323271 -119650869 + AluSg SINE Alu 1 308 -2 1149 268 134 34 chrX 57323271 57323681 -119650459 - L2 LINE L2 -277 3036 2489 255 224 0 0 chrX 57323681 57323730 -119650410 - MIR SINE MIR -57 151 103 707 317 23 120 chrX 57324337 57324855 -119649285 - L2 LINE L2 0 3272 2805 243 309 210 25 chrX 57324956 57325270 -119648870 - L2 LINE L2 -687 2627 2256 1360 268 60 59 chrX 57325395 57325583 -119648557 + L2 LINE L2 2773 2959 -354 2255 111 7 3 chrX 57325583 57325889 -119648251 + AluSx SINE Alu 1 307 -5 1360 268 60 59 chrX 57325889 57326265 -119647875 + L2 LINE L2 2959 3313 0 2085 171 120 15 chrX 57326457 57326732 -119647408 - MLT1D LTR MaLR 0 505 260 2146 145 24 6 chrX 57326732 57327069 -119647071 - MER61A LTR ERV1 0 343 1 2085 171 120 15 chrX 57327069 57327250 -119646890 - MLT1D LTR MaLR -245 260 1 1116 167 56 0 chrX 57327368 57327566 -119646574 + MER3 DNA MER1_type 1 209 0 1148 274 72 54 chrX 57327647 57327759 -119646381 + L1MEd LINE L1 549 658 -5738 1881 167 0 7 chrX 57327759 57328047 -119646093 + AluJb SINE Alu 2 287 -25 1148 274 72 54 chrX 57328047 57328629 -119645511 + L1MEd LINE L1 658 1228 -5168 4932 68 25 12 chrX 57328629 57329305 -119644835 + L1PA13 LINE L1 5460 6144 -19 204 40 0 0 chrX 57329310 57329335 -119644805 + (TAA)n Simple_repeat Simple_repeat 2 26 0 1148 274 72 54 chrX 57329335 57329688 -119644452 + L1MEd LINE L1 1231 1665 -4731 481 316 20 58 chrX 57329900 57330194 -119643946 + L1MEd LINE L1 1961 2243 -4153 30 89 0 0 chrX 57330221 57330300 -119643840 + AT_rich Low_complexity Low_complexity 1 79 0 760 102 0 0 chrX 57330300 57330408 -119643732 - L1PA16 LINE L1 -9 6157 6050 423 91 0 0 chrX 57330408 57330463 -119643677 - FLAM_A SINE Alu -44 98 44 2131 114 0 0 chrX 57330463 57330744 -119643396 - AluSx SINE Alu -31 281 1 2796 223 97 27 chrX 57330776 57332454 -119641686 + L1ME3 LINE L1 1868 3736 -2479 300 89 0 0 chrX 57332443 57332488 -119641652 + L1MB8 LINE L1 4729 4773 -1373 * 3103 136 31 18 chrX 57332479 57332761 -119641379 + L1MB8 LINE L1 5209 5486 -698 1921 149 28 0 chrX 57332761 57333049 -119641091 + AluJb SINE Alu 1 296 -16 3103 136 31 18 chrX 57333049 57333377 -119640763 + L1MB8 LINE L1 5486 5827 -357 1466 134 3 48 chrX 57333383 57333673 -119640467 + L1MB8 LINE L1 5896 6172 -6 2785 251 60 3 chrX 57333678 57334423 -119639717 - L2 LINE L2 -711 2603 1816 21 36 0 0 chrX 57334467 57334495 -119639645 + AT_rich Low_complexity Low_complexity 1 28 0 655 198 0 9 chrX 57334561 57334677 -119639463 + AluJb SINE Alu 1 115 -197 1036 270 49 36 chrX 57334677 57335144 -119638996 + L1ME3 LINE L1 4588 5060 -1155 394 324 41 0 chrX 57335180 57335362 -119638778 + MER20B DNA MER1_type 1 197 -22 1065 258 96 64 chrX 57335409 57335651 -119638489 + L1ME3 LINE L1 5140 5373 -858 1774 168 0 44 chrX 57335651 57335967 -119638173 + AluJo SINE Alu 2 303 -9 1065 258 96 64 chrX 57335967 57336579 -119637561 + L1ME3 LINE L1 5373 6020 -211 710 136 28 90 chrX 57336965 57337010 -119637130 - L1MA7 LINE L1 -142 6149 6103 2390 145 70 2 chrX 57337010 57337411 -119636729 + MSTA LTR MaLR 1 428 0 730 200 0 0 chrX 57337418 57337569 -119636571 - FLAM_A SINE Alu 0 151 1 710 136 28 90 chrX 57337569 57337690 -119636450 - L1MA7 LINE L1 -194 6097 5984 510 126 48 10 chrX 57337691 57337794 -119636346 + L1MA7 LINE L1 6178 6284 -7 389 256 92 62 chrX 57338124 57338319 -119635821 + MIR3 SINE MIR 7 207 -1 22 0 0 0 chrX 57341410 57341432 -119632708 + AT_rich Low_complexity Low_complexity 1 22 0 184 250 0 39 chrX 57342171 57342223 -119631917 - L2 LINE L2 -3 3310 3261 642 302 49 29 chrX 57342286 57342619 -119631521 - L2 LINE L2 -9 3263 2925 278 155 35 35 chrX 57342801 57342859 -119631281 + L2 LINE L2 3215 3272 0 22 0 0 0 chrX 57343355 57343377 -119630763 + AT_rich Low_complexity Low_complexity 1 22 0 269 288 25 0 chrX 57343721 57343801 -119630339 - L2 LINE L2 -6 3307 3226 1152 88 6 11 chrX 57343801 57343983 -119630157 + L1MA5 LINE L1 6075 6255 -45 1611 131 11 7 chrX 57343983 57344256 -119629884 + L1MA3 LINE L1 6030 6305 0 282 60 100 0 chrX 57344279 57344329 -119629811 + L1MA5 LINE L1 6241 6295 -5 530 319 67 6 chrX 57344592 57344787 -119629353 + MIR SINE MIR 9 212 -50 206 311 16 16 chrX 57344813 57344874 -119629266 - MIR SINE MIR -181 81 21 233 379 76 21 chrX 57345078 57345223 -119628917 - L2 LINE L2 -1 3271 3119 1286 227 84 30 chrX 57345281 57345651 -119628489 - MLT1B LTR MaLR 0 390 1 378 0 0 0 chrX 57345651 57345693 -119628447 + (TG)n Simple_repeat Simple_repeat 2 43 0 389 292 73 22 chrX 57345694 57345958 -119628182 - L2 LINE L2 -619 2695 2353 401 284 61 105 chrX 57346200 57346542 -119627598 + L2 LINE L2 2925 3251 -21 866 212 179 10 chrX 57346550 57346779 -119627361 - MIR SINE MIR -4 258 2 183 42 0 0 chrX 57347203 57347227 -119626913 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 830 276 37 16 chrX 57347479 57347725 -119626415 + MIR SINE MIR 6 256 -6 474 295 53 24 chrX 57348111 57348379 -119625761 - L1MB8 LINE L1 -312 5866 5584 718 271 96 9 chrX 57348394 57348612 -119625528 + MIR SINE MIR 2 238 -24 277 206 83 89 chrX 57348676 57348802 -119625338 + L1ME4a LINE L1 5943 6069 -52 1805 167 10 7 chrX 57348802 57349107 -119625033 - AluJo SINE Alu -6 306 1 277 206 83 89 chrX 57349107 57349160 -119624980 + L1ME4a LINE L1 6069 6121 0 464 356 86 34 chrX 57349929 57350196 -119623944 - L2 LINE L2 -450 2864 2584 190 147 0 29 chrX 57350206 57350240 -119623900 - MIR SINE MIR -140 68 36 2541 59 0 0 chrX 57350397 57350700 -119623440 - AluY SINE Alu -8 303 1 261 165 275 33 chrX 57351096 57351187 -119622953 + L2 LINE L2 3199 3311 -2 2039 168 22 0 chrX 57351376 57351740 -119622400 - L1MB7 LINE L1 -10 6174 5803 226 244 51 39 chrX 57352868 57352946 -119621194 + L2 LINE L2 3156 3234 -38 401 274 176 0 chrX 57353101 57353254 -119620886 - MER5A DNA MER1_type -6 183 4 1638 158 29 3 chrX 57353265 57353581 -119620559 + MER33 DNA MER1_type 1 324 0 997 194 11 6 chrX 57353590 57353770 -119620370 - MER58A DNA MER1_type -1 223 43 4256 187 77 49 chrX 57353775 57354487 -119619653 + L1MB7 LINE L1 241 993 -5549 2341 109 0 13 chrX 57354487 57354798 -119619342 + AluSx SINE Alu 1 307 -5 4256 187 77 49 chrX 57354798 57355130 -119619010 + L1MB7 LINE L1 993 1314 -5228 2127 114 24 0 chrX 57355131 57355420 -119618720 + AluSq SINE Alu 1 296 -17 2996 213 65 75 chrX 57355421 57355710 -119618430 + L1MB7 LINE L1 1987 2278 -4366 2675 124 50 27 chrX 57355710 57356154 -119617986 - MSTB2 LTR MaLR -3 454 1 2996 213 65 75 chrX 57356154 57357120 -119617020 + L1MB7 LINE L1 2278 3253 -3391 1394 108 0 0 chrX 57357120 57357306 -119616834 + U2 snRNA snRNA 2 187 -1 2996 213 65 75 chrX 57357306 57357574 -119616566 + L1MB7 LINE L1 3253 3522 -3122 2294 111 0 3 chrX 57357574 57357881 -119616259 + AluSx SINE Alu 5 310 -2 2996 213 65 75 chrX 57357881 57358081 -119616059 + L1MB7 LINE L1 3522 3723 -2921 880 133 0 0 chrX 57358081 57358209 -119615931 + FLAM_C SINE Alu 2 129 -4 2996 213 65 75 chrX 57358209 57358428 -119615712 + L1MB7 LINE L1 3723 4050 -2594 1532 165 16 133 chrX 57358441 57359036 -119615104 + MLT2B1 LTR ERVL 3 474 -46 192 40 0 0 chrX 57359036 57359061 -119615079 + (GA)n Simple_repeat Simple_repeat 2 26 0 1532 165 16 133 chrX 57359061 57359102 -119615038 + MLT2B1 LTR ERVL 474 518 -2 261 134 73 73 chrX 57359104 57359165 -119614975 + L1MB7 LINE L1 4119 4182 -2462 1850 140 6 55 chrX 57359165 57359493 -119614647 + AluJb SINE Alu 1 312 0 261 134 73 73 chrX 57359493 57359513 -119614627 + L1MB7 LINE L1 4181 4200 -2444 * 4517 146 50 20 chrX 57359509 57359603 -119614537 + L1MB7 LINE L1 5686 5776 -906 2065 143 0 3 chrX 57359603 57359897 -119614243 - AluJb SINE Alu -17 295 3 4517 146 50 20 chrX 57359897 57359938 -119614202 + L1MB7 LINE L1 5776 5814 -868 1971 147 0 20 chrX 57359938 57360244 -119613896 + AluJo SINE Alu 1 300 -12 4517 146 50 20 chrX 57360244 57361003 -119613137 + L1MB7 LINE L1 5814 6601 -81 326 209 54 9 chrX 57361018 57361110 -119613030 - MER58 DNA MER1_type -113 102 1 433 260 53 57 chrX 57361114 57361341 -119612799 + MIR SINE MIR 21 246 -16 717 252 90 14 chrX 57361393 57361615 -119612525 - MIR SINE MIR 0 262 24 330 294 126 0 chrX 57361815 57361934 -119612206 - L2 LINE L2 0 3272 3139 708 221 48 56 chrX 57362308 57362539 -119611601 + L2 LINE L2 3085 3313 0 1124 213 44 30 chrX 57362985 57363251 -119610889 - L1MC5 LINE L1 -51 7910 7636 3218 60 70 2 chrX 57363251 57363630 -119610510 + MLT2A1 LTR ERVL 1 412 -32 2224 108 0 0 chrX 57363630 57363916 -119610224 + AluSg SINE Alu 1 286 -24 3218 60 70 2 chrX 57363916 57363952 -119610188 + MLT2A1 LTR ERVL 412 444 0 1124 213 44 30 chrX 57363952 57364051 -119610089 - L1MC5 LINE L1 -325 7636 7540 457 311 46 73 chrX 57365454 57365634 -119608506 - L2 LINE L2 -2 3270 3104 2435 84 0 0 chrX 57365634 57365930 -119608210 + AluSc SINE Alu 1 296 -13 457 311 46 73 chrX 57365930 57366119 -119608021 - L2 LINE L2 -168 3104 2911 562 324 78 37 chrX 57367600 57368158 -119605982 - L2 LINE L2 0 3272 2622 239 291 172 40 chrX 57368225 57368376 -119605764 + L2 LINE L2 3102 3272 0 451 304 23 88 chrX 57368698 57369004 -119605136 + L2 LINE L2 2972 3257 -15 1495 152 0 8 chrX 57369012 57369249 -119604891 + MER46A DNA MER2_type 2 236 0 544 175 0 0 chrX 57369458 57369555 -119604585 - L1PB4 LINE L1 -2 6154 6058 685 234 14 0 chrX 57370251 57370396 -119603744 - MER117 DNA MER1_type -49 148 2 2430 86 0 7 chrX 57370415 57370716 -119603424 + AluSx SINE Alu 1 299 -13 941 241 4 36 chrX 57371624 57371806 -119602334 - MIR SINE MIR -13 249 76 2515 142 42 0 chrX 57371806 57372215 -119601925 - MSTB LTR MaLR 0 426 1 941 241 4 36 chrX 57372215 57372281 -119601859 - MIR SINE MIR -186 76 9 219 246 9 118 chrX 57372507 57372617 -119601523 + L2 LINE L2 3183 3280 -33 438 182 0 0 chrX 57372815 57372907 -119601233 + AluJ/FRAM SINE Alu 217 308 0 2261 106 7 0 chrX 57373910 57374212 -119599928 - AluSg SINE Alu -4 306 3 2136 139 3 0 chrX 57374214 57374516 -119599624 - AluSx SINE Alu -9 303 1 192 346 19 9 chrX 57374544 57374651 -119599489 + L2 LINE L2 2560 2667 -647 369 273 14 49 chrX 57374929 57375072 -119599068 - L2 LINE L2 -1 3271 3134 2324 107 27 24 chrX 57375241 57375577 -119598563 + MER1B DNA MER1_type 1 337 0 4339 143 38 11 chrX 57375582 57376072 -119598068 + MER44D DNA MER2_type 1 389 -2098 2306 90 0 37 chrX 57376072 57376393 -119597747 + AluSx SINE Alu 1 309 -3 4339 143 38 11 chrX 57376393 57376616 -119597524 + MER44D DNA MER2_type 389 605 0 196 308 131 63 chrX 57376786 57377403 -119596737 + L2 LINE L2 2089 2747 -567 2087 109 3 33 chrX 57377405 57377709 -119596431 + AluSx SINE Alu 1 295 -17 351 235 130 0 chrX 57377735 57377850 -119596290 - L2 LINE L2 0 3313 3184 680 263 22 27 chrX 57378090 57378314 -119595826 + MIR SINE MIR 40 262 0 212 284 60 0 chrX 57378365 57378432 -119595708 + L2 LINE L2 3186 3256 -16 202 167 0 56 chrX 57378618 57378672 -119595468 + (AGCTG)n Simple_repeat Simple_repeat 2 52 0 297 294 112 7 chrX 57379368 57379511 -119594629 - MIR SINE MIR -11 251 94 600 101 0 30 chrX 57379512 57379611 -119594529 + L1PB3 LINE L1 6058 6153 -1 225 310 0 0 chrX 57380127 57380185 -119593955 + tRNA-Ile-ATT tRNA tRNA 10 67 -10 217 226 0 0 chrX 57381719 57381772 -119592368 - L2 LINE L2 -76 3196 3144 407 259 63 38 chrX 57381969 57382208 -119591932 - L2 LINE L2 -213 3059 2815 1953 150 27 0 chrX 57382889 57383183 -119590957 + AluJo SINE Alu 1 302 -10 489 350 8 8 chrX 57384706 57384946 -119589194 + L3 LINE CR1 743 982 -595 1162 286 65 13 chrX 57384950 57385412 -119588728 + L3 LINE CR1 1091 1576 -1 213 349 0 12 chrX 57386888 57386974 -119587166 + GA-rich Low_complexity Low_complexity 2 86 0 321 145 116 0 chrX 57387085 57387154 -119586986 - MIR SINE MIR -101 161 85 254 203 0 51 chrX 57387155 57387214 -119586926 - L2 LINE L2 -1 3271 3216 184 241 11 103 chrX 57387198 57387285 -119586855 - MIR SINE MIR -173 89 11 * 1876 146 3 14 chrX 57388306 57388600 -119585540 + AluJb SINE Alu 1 291 -21 312 298 216 0 chrX 57388774 57388927 -119585213 - MIR SINE MIR -43 219 35 477 272 60 43 chrX 57389707 57389942 -119584198 + L1ME4a LINE L1 5777 6015 -106 368 169 220 0 chrX 57389955 57390073 -119584067 + L1ME4a LINE L1 5978 6121 0 1200 257 51 16 chrX 57390091 57390406 -119583734 - L1MDa LINE L1 -5576 964 639 476 264 200 72 chrX 57390416 57390484 -119583656 - L2 LINE L2 -23 3290 3232 761 203 0 0 chrX 57390484 57390617 -119583523 + FLAM_A SINE Alu 1 133 0 476 264 200 72 chrX 57390617 57390816 -119583324 - L2 LINE L2 -81 3232 2967 2005 155 0 10 chrX 57390816 57391113 -119583027 + AluJb SINE Alu 1 294 -18 476 264 200 72 chrX 57391113 57391189 -119582951 - L2 LINE L2 -346 2967 2902 447 290 0 0 chrX 57391374 57391498 -119582642 - MIR SINE MIR -93 169 46 437 325 42 6 chrX 57394874 57395040 -119579100 + L2 LINE L2 3100 3271 -1 26 64 0 0 chrX 57395357 57395404 -119578736 + AT_rich Low_complexity Low_complexity 1 47 0 795 119 0 0 chrX 57395404 57395522 -119578618 - FLAM_C SINE Alu -15 118 1 23 0 0 0 chrX 57395550 57395573 -119578567 + AT_rich Low_complexity Low_complexity 1 23 0 489 80 0 0 chrX 57395573 57395648 -119578492 + (TA)n Simple_repeat Simple_repeat 2 76 0 1055 272 96 58 chrX 57396004 57396834 -119577306 - L2 LINE L2 -5 3308 2451 1087 169 50 10 chrX 57396880 57397081 -119577059 - MER3 DNA MER1_type 0 209 1 635 195 40 0 chrX 57397096 57397239 -119576901 + L1MC2 LINE L1 5185 5334 -807 2090 150 0 7 chrX 57397239 57397545 -119576595 + AluJb SINE Alu 1 304 -8 897 146 0 0 chrX 57397575 57397705 -119576435 + AluJo SINE Alu 5 134 -178 371 148 0 0 chrX 57397719 57397780 -119576360 + L1MC2 LINE L1 5319 5379 -954 420 171 37 37 chrX 57397782 57397864 -119576276 - Tigger5 DNA MER2_type 0 2323 2242 414 226 24 0 chrX 57397846 57397930 -119576210 + Tigger5 DNA MER2_type 2232 2317 -6 * 293 170 0 19 chrX 57397932 57397985 -119576155 - Tigger5 DNA MER2_type -2244 79 28 5246 133 53 52 chrX 57397994 57398333 -119575807 + L1MC2 LINE L1 5381 5718 -626 243 0 0 0 chrX 57398333 57398360 -119575780 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2034 148 7 0 chrX 57398362 57398660 -119575480 - AluJo SINE Alu -12 300 1 5246 133 53 52 chrX 57398660 57399280 -119574860 + L1MC2 LINE L1 5718 6344 0 288 261 14 0 chrX 57399295 57399364 -119574776 + L2 LINE L2 3199 3268 -4 191 171 0 24 chrX 57399395 57399436 -119574704 - MIR SINE MIR -150 58 19 325 172 35 0 chrX 57399449 57399507 -119574633 + MER94 DNA DNA 1 60 -74 834 273 18 92 chrX 57399541 57399996 -119574144 + Charlie8 DNA MER1_type 1 421 -1996 2361 95 0 7 chrX 57400578 57400882 -119573258 - AluSx SINE Alu -10 302 1 297 285 119 57 chrX 57400947 57401140 -119573000 - L2 LINE L2 -665 2649 2445 5463 179 38 20 chrX 57401159 57401337 -119572803 + L1MD2 LINE L1 5101 5274 -1085 2249 103 0 0 chrX 57401337 57401638 -119572502 + AluSx SINE Alu 1 301 -11 5463 179 38 20 chrX 57401638 57402710 -119571430 + L1MD2 LINE L1 5274 6358 -1 1049 211 154 35 chrX 57402696 57403008 -119571132 + L1MD2 LINE L1 5805 6153 -206 * 1981 92 21 7 chrX 57403061 57403342 -119570798 + AluSc SINE Alu 18 302 -7 443 238 57 0 chrX 57403399 57403504 -119570636 - L2 LINE L2 -1 3271 3161 769 236 84 29 chrX 57403842 57404117 -119570023 - MLT1H LTR MaLR -44 505 216 239 103 26 0 chrX 57404133 57404172 -119569968 - L1MB7 LINE L1 0 6184 6145 279 167 17 0 chrX 57405489 57405549 -119568591 + L1ME4a LINE L1 6060 6120 -1 386 278 105 38 chrX 57405894 57406103 -119568037 - MIR SINE MIR -37 225 3 429 255 40 27 chrX 57406218 57406367 -119567773 + MIR SINE MIR 71 221 -41 254 271 56 28 chrX 57406632 57406739 -119567401 + HAL1 LINE L1 2384 2493 -14 181 222 32 0 chrX 57406944 57407007 -119567133 + GA-rich Low_complexity Low_complexity 2 66 0 704 273 19 14 chrX 57407172 57407381 -119566759 + MIR SINE MIR 26 235 -27 234 245 102 20 chrX 57407634 57407732 -119566408 + L2 LINE L2 2919 3024 -289 1907 126 0 0 chrX 57407745 57408030 -119566110 + AluJb SINE Alu 1 285 -27 1996 127 0 17 chrX 57408045 57408345 -119565795 + AluSx SINE Alu 1 295 -17 2227 90 0 7 chrX 57408346 57408656 -119565484 + AluSx SINE Alu 1 308 -4 261 173 0 0 chrX 57408756 57408788 -119565352 + CT-rich Low_complexity Low_complexity 1 35 -17 2594 42 0 6 chrX 57408788 57409099 -119565041 - AluY SINE Alu -2 309 1 261 173 0 0 chrX 57409099 57409118 -119565022 + CT-rich Low_complexity Low_complexity 34 52 0 238 309 197 32 chrX 57409189 57409377 -119564763 - L2 LINE L2 -188 3084 2866 333 244 90 76 chrX 57409403 57409760 -119564380 + L1MC5 LINE L1 7581 7942 -19 409 327 48 12 chrX 57409773 57409938 -119564202 - L2 LINE L2 -482 2832 2662 408 20 0 0 chrX 57410077 57410126 -119564014 + (TG)n Simple_repeat Simple_repeat 2 50 0 240 284 0 0 chrX 57410189 57410263 -119563877 - L1ME4a LINE L1 -86 6035 5962 512 204 19 9 chrX 57410267 57410375 -119563765 - L2 LINE L2 -10 3303 3195 234 289 0 33 chrX 57410416 57410506 -119563634 - L1ME4a LINE L1 -1909 5899 5813 287 240 31 21 chrX 57410563 57410659 -119563481 - L1ME4a LINE L1 -321 5800 5704 * 2804 220 26 16 chrX 57410650 57410791 -119563349 + L1MB5 LINE L1 4243 4381 -1765 2346 84 0 0 chrX 57410791 57411101 -119563039 + AluY SINE Alu 1 310 -1 2804 220 26 16 chrX 57411101 57411660 -119562480 + L1MB5 LINE L1 4381 4950 -1196 1244 105 0 0 chrX 57411660 57411832 -119562308 + AluSg/x SINE Alu 131 302 -10 1062 184 15 71 chrX 57411832 57412027 -119562113 + L1MB5 LINE L1 4949 5127 -1019 1978 123 0 10 chrX 57412027 57412320 -119561820 + AluSx SINE Alu 3 292 -20 1062 184 15 71 chrX 57412320 57412390 -119561750 + L1MB5 LINE L1 5127 5199 -947 1708 118 0 29 chrX 57412394 57412674 -119561466 + AluJo SINE Alu 31 302 -10 4509 162 23 21 chrX 57412674 57413489 -119560651 + L1MB5 LINE L1 5325 6141 -33 901 109 0 20 chrX 57413491 57413638 -119560502 - L1MA4 LINE L1 0 6300 6157 612 279 117 29 chrX 57413675 57413991 -119560149 - L1ME4a LINE L1 -407 5714 5371 181 269 19 19 chrX 57414045 57414097 -119560043 + L2 LINE L2 3205 3256 -16 2087 117 0 3 chrX 57414238 57414545 -119559595 + AluSg SINE Alu 1 306 -4 1548 238 126 36 chrX 57414939 57414980 -119559160 - L2 LINE L2 -57 3256 3220 1665 140 11 21 chrX 57414980 57415265 -119558875 + AluJo SINE Alu 12 293 -19 1548 238 126 36 chrX 57415265 57415861 -119558279 - L2 LINE L2 -93 3220 2520 1555 188 0 14 chrX 57415861 57416154 -119557986 - AluJo SINE Alu -23 289 1 1548 238 126 36 chrX 57416154 57416310 -119557830 - L2 LINE L2 -793 2520 2379 252 309 98 0 chrX 57416688 57416811 -119557329 + L2 LINE L2 3137 3271 -1 670 247 54 36 chrX 57417005 57417228 -119556912 - MIR SINE MIR -25 237 11 205 309 0 49 chrX 57418016 57418097 -119556043 + MIR3 SINE MIR 116 192 -16 292 333 95 0 chrX 57418150 57418276 -119555864 + MIR3 SINE MIR 6 143 -65 2219 81 7 7 chrX 57418284 57418591 -119555549 + AluSx SINE Alu 1 307 -5 756 269 12 51 chrX 57418736 57418993 -119555147 + MIR SINE MIR 1 247 -15 369 242 0 22 chrX 57419150 57419241 -119554899 + MER91A DNA MER1_type 72 160 -36 249 246 49 0 chrX 57419247 57419308 -119554832 + MER91A DNA MER1_type 132 195 -1 200 283 163 51 chrX 57420383 57420715 -119553425 + L2 LINE L2 2272 2640 -674 486 273 58 10 chrX 57420853 57421039 -119553101 + MIR SINE MIR 2 190 -62 194 73 55 36 chrX 57421383 57421438 -119552702 + CT-rich Low_complexity Low_complexity 1 56 0 199 267 0 0 chrX 57421704 57421749 -119552391 - MIR SINE MIR -105 157 113 24 0 0 0 chrX 57422194 57422218 -119551922 + AT_rich Low_complexity Low_complexity 1 24 0 395 278 130 24 chrX 57422243 57422412 -119551728 + MIR SINE MIR 20 206 -56 1548 129 14 71 chrX 57422482 57422799 -119551341 + AluJb SINE Alu 7 306 0 265 165 124 66 chrX 57422816 57422937 -119551203 - L1MC5 LINE L1 -110 7851 7724 509 224 158 0 chrX 57422961 57423144 -119550996 - L1ME4a LINE L1 -16 6105 5894 403 239 90 15 chrX 57423156 57423290 -119550850 - L1ME4a LINE L1 -27 6094 5951 309 145 0 66 chrX 57423380 57423456 -119550684 - L1ME4a LINE L1 -65 6056 5986 302 246 154 75 chrX 57423592 57423846 -119550294 - L1ME4a LINE L1 -60 6061 5772 315 0 0 0 chrX 57423846 57423881 -119550259 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 246 154 75 chrX 57423881 57423971 -119550169 - L1ME4a LINE L1 -349 5772 5690 539 318 19 0 chrX 57424370 57424524 -119549616 - MIR SINE MIR -85 177 21 340 298 190 6 chrX 57424561 57424719 -119549421 + MIR SINE MIR 16 202 -60 21 36 0 0 chrX 57426042 57426070 -119548070 + GC_rich Low_complexity Low_complexity 1 28 0 200 139 0 23 chrX 57427590 57427633 -119546507 + (CGCGG)n Simple_repeat Simple_repeat 1 42 0 28 48 0 0 chrX 57427816 57427858 -119546282 + GC_rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chrX 57427965 57427986 -119546154 + (CCCG)n Simple_repeat Simple_repeat 3 23 0 208 147 0 0 chrX 57428302 57428336 -119545804 + (CA)n Simple_repeat Simple_repeat 2 35 0 488 167 18 26 chrX 57428389 57428503 -119545637 + MIR SINE MIR 23 135 -73 202 301 21 0 chrX 57429577 57429670 -119544470 + T-rich Low_complexity Low_complexity 3 97 0 791 163 0 16 chrX 57430226 57430355 -119543785 - FLAM_A SINE Alu -6 127 1 414 244 80 102 chrX 57433661 57433886 -119540254 - L2 LINE L2 -16 3256 3037 2509 168 71 20 chrX 57435142 57435635 -119538505 - MLT2B1 LTR ERVL 0 520 3 271 293 65 32 chrX 57436084 57436207 -119537933 - L2 LINE L2 -12 3260 3134 591 309 108 15 chrX 57436483 57436752 -119537388 - L2 LINE L2 -6 3307 3014 1193 78 12 0 chrX 57436903 57437070 -119537070 + L1MB2 LINE L1 6001 6169 -2 515 297 144 44 chrX 57437102 57437352 -119536788 + L1MC/D LINE L1 4882 5172 -974 1702 176 3 14 chrX 57437352 57437679 -119536461 + AluJo SINE Alu 1 312 0 515 297 144 44 chrX 57437679 57437748 -119536392 + L1MC/D LINE L1 5172 5233 -913 424 234 0 71 chrX 57437757 57437941 -119536199 + L1MC/D LINE L1 5265 5435 -2373 546 276 103 20 chrX 57437969 57438172 -119535968 + L1MD2 LINE L1 58 277 -6263 252 200 0 0 chrX 57438172 57438227 -119535913 + (CACG)n Simple_repeat Simple_repeat 1 55 0 1730 164 154 40 chrX 57438539 57438942 -119535198 + L1MD2 LINE L1 842 1290 -5253 347 81 0 20 chrX 57438949 57439007 -119535133 + AluJb SINE Alu 86 132 -170 28 48 0 0 chrX 57439021 57439063 -119535077 + AT_rich Low_complexity Low_complexity 1 42 0 1067 122 42 32 chrX 57439162 57439351 -119534789 + AluJb SINE Alu 117 307 -5 768 110 37 7 chrX 57439351 57439487 -119534653 + L1MD2 LINE L1 1306 1445 -5098 1035 156 66 8 chrX 57439554 57439811 -119534329 + L1MD2 LINE L1 2323 2594 -3946 1210 108 0 0 chrX 57439813 57439979 -119534161 - AluSg/x SINE Alu -13 299 134 2256 79 0 7 chrX 57439979 57440284 -119533856 - AluY SINE Alu -6 305 3 1960 136 0 0 chrX 57440314 57440609 -119533531 + AluSx SINE Alu 1 295 -17 430 194 259 0 chrX 57440618 57440726 -119533414 + FLAM_C SINE Alu 1 136 -7 8419 224 70 43 chrX 57440730 57441547 -119532593 + L1MD2 LINE L1 2597 3391 -3149 748 188 0 0 chrX 57441547 57441680 -119532460 + FLAM_C SINE Alu 1 133 0 8419 224 70 43 chrX 57441680 57442461 -119531679 + L1MD2 LINE L1 3391 4150 -2390 1719 153 31 7 chrX 57442461 57442749 -119531391 + AluJo SINE Alu 1 295 -17 8419 224 70 43 chrX 57442749 57442905 -119531235 + L1MD2 LINE L1 4150 4300 -2240 2029 96 26 20 chrX 57442905 57443207 -119530933 + AluSx SINE Alu 1 304 -8 8419 224 70 43 chrX 57443207 57443219 -119530921 + L1MD2 LINE L1 4300 4310 -2230 2174 125 0 0 chrX 57443219 57443530 -119530610 + AluSx SINE Alu 1 311 -1 8419 224 70 43 chrX 57443530 57443597 -119530543 + L1MD2 LINE L1 4310 4374 -2166 186 71 0 0 chrX 57443597 57443625 -119530515 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 8419 224 70 43 chrX 57443625 57444409 -119529731 + L1MD2 LINE L1 4374 5287 -1253 1622 134 43 36 chrX 57444418 57444695 -119529445 + AluJo SINE Alu 19 297 -15 3314 164 68 3 chrX 57444695 57445316 -119528824 + L1MD2 LINE L1 5704 6364 -389 2517 49 0 0 chrX 57445337 57445644 -119528496 - AluY SINE Alu -4 307 1 2749 80 3 0 chrX 57445644 57445996 -119528144 - THE1A LTR MaLR -2 353 1 576 219 55 31 chrX 57446007 57446135 -119528005 + MIR SINE MIR 13 143 -119 504 261 108 46 chrX 57446174 57446217 -119527923 - L2 LINE L2 -51 3262 3223 1724 155 38 3 chrX 57446217 57446508 -119527632 - AluJb SINE Alu -11 301 1 504 261 108 46 chrX 57446508 57446659 -119527481 - L2 LINE L2 -90 3223 3056 268 114 0 0 chrX 57446685 57446720 -119527420 + U2 snRNA snRNA 1 35 -153 510 237 11 83 chrX 57446733 57446898 -119527242 + L1MC4a LINE L1 5446 5597 -567 1960 129 7 0 chrX 57446898 57447192 -119526948 + AluSx SINE Alu 1 296 -16 510 237 11 83 chrX 57447192 57447231 -119526909 + L1MC4a LINE L1 5597 5637 -527 780 214 138 25 chrX 57447231 57447427 -119526713 + MIR SINE MIR 34 251 -11 456 282 44 86 chrX 57447439 57447539 -119526601 + L1MC4a LINE L1 5625 5728 -2080 2435 45 7 3 chrX 57447539 57447847 -119526293 + AluY SINE Alu 1 309 -2 456 282 44 86 chrX 57447847 57447877 -119526263 + L1MC4a LINE L1 5728 5758 -2050 1724 104 104 0 chrX 57447877 57448145 -119525995 + AluSx SINE Alu 1 296 -16 456 282 44 86 chrX 57448145 57448399 -119525741 + L1MC4a LINE L1 5758 5994 -1814 1681 200 20 73 chrX 57448561 57448867 -119525273 + L1ME1 LINE L1 4879 5200 -1015 2190 108 0 0 chrX 57448867 57449162 -119524978 + AluSx SINE Alu 1 295 -17 1681 200 20 73 chrX 57449162 57449245 -119524895 + L1ME1 LINE L1 5200 5286 -929 768 82 0 0 chrX 57449245 57449343 -119524797 + HY3 scRNA scRNA 4 101 0 1681 200 20 73 chrX 57449343 57449578 -119524562 + L1ME1 LINE L1 5286 5472 -743 4986 144 31 31 chrX 57449588 57449715 -119524425 + L1MB4 LINE L1 5111 5237 -943 2196 91 88 9 chrX 57449715 57450044 -119524096 - THE1A LTR MaLR 0 355 1 4986 144 31 31 chrX 57450044 57450944 -119523196 + L1MB4 LINE L1 5237 6143 -37 2020 121 0 0 chrX 57450944 57451268 -119522872 - AluSg SINE Alu 0 324 1 4986 144 31 31 chrX 57451268 57451305 -119522835 + L1MB4 LINE L1 6143 6179 -1 2808 201 26 47 chrX 57451313 57452015 -119522125 + L1ME1 LINE L1 5475 6161 -5 1212 134 0 20 chrX 57452047 57452248 -119521892 - AluJo SINE Alu -115 197 1 25 31 0 0 chrX 57452599 57452631 -119521509 + AT_rich Low_complexity Low_complexity 1 32 0 234 250 15 15 chrX 57452873 57452941 -119521199 + L1ME4a LINE L1 5341 5408 -754 2298 81 0 3 chrX 57452944 57453240 -119520900 - AluSx SINE Alu -17 295 1 689 318 77 38 chrX 57453467 57454001 -119520139 + L2 LINE L2 2231 2785 -529 404 351 46 0 chrX 57454092 57454223 -119519917 + L2 LINE L2 3136 3272 0 476 274 80 20 chrX 57454254 57454455 -119519685 + L1ME4a LINE L1 5691 5903 -218 193 216 135 40 chrX 57454723 57454797 -119519343 + MIR SINE MIR 33 113 -95 220 213 0 125 chrX 57454851 57454987 -119519153 + L2 LINE L2 2386 2504 -810 225 303 73 28 chrX 57455186 57455295 -119518845 + L3 LINE CR1 1407 1520 -57 217 352 56 32 chrX 57455306 57455431 -119518709 - L2 LINE L2 -1 3271 3144 1710 113 40 43 chrX 57455688 57455990 -119518150 + AluJb SINE Alu 1 301 -11 2192 30 0 19 chrX 57456419 57456716 -119517424 - AluY SINE Alu 0 310 19 398 230 40 20 chrX 57456750 57456850 -119517290 + L2 LINE L2 3154 3255 -17 291 171 80 45 chrX 57460648 57460736 -119513404 - AluJo SINE Alu -167 135 76 937 231 62 10 chrX 57462469 57462677 -119511463 - MER20 DNA MER1_type 0 219 1 1749 160 16 22 chrX 57463110 57463422 -119510718 - AluJo SINE Alu 0 312 3 1399 201 44 0 chrX 57463607 57463881 -119510259 + AluJb SINE Alu 1 286 -26 1554 151 55 7 chrX 57464218 57464513 -119509627 - AluJb SINE Alu 0 308 1 2026 119 7 0 chrX 57464580 57464882 -119509258 - AluSp SINE Alu -9 304 1 193 194 0 0 chrX 57465055 57465086 -119509054 - MIR3 SINE MIR -21 187 157 405 216 224 8 chrX 57465347 57465481 -119508659 + L2 LINE L2 2385 2547 -767 353 235 106 15 chrX 57465481 57465613 -119508527 + L1MC5 LINE L1 7630 7773 -188 1538 171 27 17 chrX 57465615 57465907 -119508233 + AluJo SINE Alu 3 297 -15 339 202 91 20 chrX 57465907 57466006 -119508134 + L1MC5 LINE L1 7822 7927 -34 1129 218 106 42 chrX 57466053 57466430 -119507710 + L2 LINE L2 2544 2944 -370 493 249 11 34 chrX 57466444 57466621 -119507519 - L1MC4 LINE L1 0 8042 7870 1567 156 7 17 chrX 57466621 57466910 -119507230 + AluJo SINE Alu 1 286 -26 1845 109 18 0 chrX 57466910 57467194 -119506946 - AluSq SINE Alu -24 289 1 1989 118 14 0 chrX 57467223 57467510 -119506630 + AluSg SINE Alu 1 291 -19 301 75 0 0 chrX 57467522 57467562 -119506578 + MER4E LTR ERV1 653 692 -74 2006 114 21 0 chrX 57467820 57468110 -119506030 + AluSx SINE Alu 1 296 -16 1650 151 7 34 chrX 57468126 57468417 -119505723 + MER63C DNA MER1_type 143 425 -505 656 198 130 37 chrX 57468417 57468579 -119505561 - FAM SINE Alu -8 41 1 2018 138 62 44 chrX 57468582 57468983 -119505157 + MER63 DNA MER1_type 556 949 -112 2566 35 0 10 chrX 57468983 57469297 -119504843 - AluY SINE Alu 0 311 1 2018 138 62 44 chrX 57469297 57469315 -119504825 + MER63 DNA MER1_type 949 965 -96 675 206 0 22 chrX 57469315 57469335 -119504805 - FLAM_A SINE Alu -169 133 114 1564 149 0 92 chrX 57469335 57469469 -119504671 + AluJo SINE Alu 1 146 -166 1410 148 85 53 chrX 57469469 57469752 -119504388 - AluJb SINE Alu -20 292 1 1564 149 0 92 chrX 57469752 57469780 -119504360 + AluJo SINE Alu 146 175 -137 2429 55 0 0 chrX 57469780 57470073 -119504067 + AluY SINE Alu 2 294 -17 1564 149 0 92 chrX 57470073 57470244 -119503896 + AluJo SINE Alu 175 304 -8 675 206 0 22 chrX 57470244 57470359 -119503781 - FLAM_A SINE Alu -188 114 1 2018 138 62 44 chrX 57470359 57470466 -119503674 + MER63 DNA MER1_type 965 1052 -9 198 379 0 0 chrX 57470779 57470866 -119503274 + L2 LINE L2 2232 2318 -996 500 311 63 89 chrX 57470871 57471254 -119502886 + L2 LINE L2 2882 3254 -18 183 265 0 0 chrX 57471310 57471359 -119502781 + L2 LINE L2 2882 2930 -342 246 283 101 109 chrX 57472015 57472481 -119501659 - L2 LINE L2 -2 3270 2809 464 323 42 32 chrX 57472634 57472851 -119501289 - MIR SINE MIR -21 241 23 792 331 69 46 chrX 57472891 57472967 -119501173 - L2 LINE L2 -525 2789 2716 2265 75 13 3 chrX 57472967 57473273 -119500867 - AluSx SINE Alu -3 309 1 792 331 69 46 chrX 57473273 57473890 -119500250 - L2 LINE L2 -598 2716 2080 208 302 19 0 chrX 57473956 57474009 -119500131 - MIR3 SINE MIR -24 184 131 710 193 83 102 chrX 57474215 57474250 -119499890 + MIR SINE MIR 1 35 -227 2145 105 0 25 chrX 57474250 57474564 -119499576 + AluSx SINE Alu 1 306 -6 710 193 83 102 chrX 57474564 57474769 -119499371 + MIR SINE MIR 35 238 -24 2307 86 0 3 chrX 57474769 57475073 -119499067 + AluSq SINE Alu 1 303 -10 710 193 83 102 chrX 57475073 57475096 -119499044 + MIR SINE MIR 238 260 -2 21 0 0 0 chrX 57475318 57475339 -119498801 + AT_rich Low_complexity Low_complexity 1 21 0 563 286 25 0 chrX 57475496 57475657 -119498483 - MIR SINE MIR -70 192 28 525 202 121 51 chrX 57476391 57476608 -119497532 - MIR SINE MIR -21 241 3 1617 214 77 82 chrX 57476627 57476940 -119497200 + L2 LINE L2 2450 2763 -550 2168 84 0 3 chrX 57476940 57477250 -119496890 - AluY SINE Alu 0 309 1 1617 214 77 82 chrX 57477250 57477620 -119496520 + L2 LINE L2 2763 3125 -188 1282 184 102 50 chrX 57477631 57478053 -119496087 + MLT2B1 LTR ERVL 1 462 -2 524 234 55 16 chrX 57478078 57478206 -119495934 + L2 LINE L2 3177 3309 -4 270 244 146 57 chrX 57478217 57478340 -119495800 + L2 LINE L2 3134 3267 -5 193 321 83 0 chrX 57478837 57478921 -119495219 + MIR SINE MIR 107 197 -65 387 41 0 0 chrX 57478970 57479019 -119495121 + (TTA)n Simple_repeat Simple_repeat 1 49 0 703 75 0 0 chrX 57479019 57479112 -119495028 - FRAM SINE Alu -30 146 54 1400 245 153 63 chrX 57479731 57480297 -119493843 - L2 LINE L2 0 3313 2799 1657 184 23 0 chrX 57480297 57480481 -119493659 - AluJb SINE Alu 0 312 117 240 59 0 0 chrX 57480481 57480515 -119493625 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1657 184 23 0 chrX 57480515 57480634 -119493506 - AluJb SINE Alu -195 117 2 2314 88 3 0 chrX 57480639 57480945 -119493195 - AluSx SINE Alu -5 307 1 1400 245 153 63 chrX 57480945 57481362 -119492778 - L2 LINE L2 -517 2796 2221 782 155 16 15 chrX 57481440 57481594 -119492546 + MLT1A1 LTR MaLR 1 165 -209 2279 88 0 19 chrX 57481599 57481907 -119492233 + AluSx SINE Alu 1 302 -10 655 143 5 39 chrX 57481943 57482133 -119492007 + AluJ SINE Alu 54 293 -19 868 139 40 155 chrX 57482148 57482336 -119491804 + MLT1A1 LTR MaLR 144 297 -68 844 166 0 83 chrX 57482336 57482517 -119491623 - FRAM SINE Alu 0 166 1 868 139 40 155 chrX 57482517 57482579 -119491561 + MLT1A1 LTR MaLR 297 365 0 966 255 33 0 chrX 57482666 57482909 -119491231 + L1MC4a LINE L1 5414 5664 -2144 2395 43 0 20 chrX 57482913 57483213 -119490927 - AluY SINE Alu -17 294 1 2154 93 7 3 chrX 57483249 57483551 -119490589 + AluSx SINE Alu 1 303 -9 842 164 7 0 chrX 57483581 57483721 -119490419 - FLAM_C SINE Alu -2 141 1 414 193 138 0 chrX 57483728 57483837 -119490303 + L1MC4a LINE L1 5709 5832 -1976 854 163 0 0 chrX 57483843 57483972 -119490168 - FLAM_A SINE Alu -4 129 1 371 147 0 0 chrX 57483995 57484070 -119490070 - L1MB4 LINE L1 -6 6174 6100 592 217 35 0 chrX 57484255 57484370 -119489770 - MER5B DNA MER1_type 0 178 60 3779 194 79 2 chrX 57484373 57485240 -119488900 - L1ME2 LINE L1 -2 6162 5224 2262 103 3 0 chrX 57485381 57485692 -119488448 - AluSx SINE Alu 0 312 1 405 0 0 0 chrX 57485951 57485996 -119488144 + (T)n Simple_repeat Simple_repeat 1 45 0 267 290 0 0 chrX 57486150 57486219 -119487921 + MIR SINE MIR 67 135 -127 234 0 0 0 chrX 57487264 57487290 -119486850 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 1704 295 77 44 chrX 57487290 57488284 -119485856 - L2 LINE L2 -13 3259 2231 1642 147 0 62 chrX 57488818 57489124 -119485016 + AluJo SINE Alu 1 287 -25 1831 136 36 0 chrX 57489188 57489489 -119484651 - AluJb SINE Alu 0 312 1 341 312 94 35 chrX 57489624 57489794 -119484346 + MIR3 SINE MIR 20 199 -9 * 1055 290 21 90 chrX 57489793 57490227 -119483913 + L2 LINE L2 2869 3272 0 1134 235 20 16 chrX 57490284 57490539 -119483601 + MIR SINE MIR 7 262 0 783 218 49 53 chrX 57490660 57490945 -119483195 - L1MC5 LINE L1 -29 7932 7649 1851 116 70 0 chrX 57490954 57491238 -119482902 - AluSq SINE Alu -9 304 1 2146 82 4 0 chrX 57491250 57491554 -119482586 - AluSg SINE Alu 0 305 1 1098 175 41 161 chrX 57492408 57492458 -119481682 - MLT1A1 LTR MaLR -3 362 308 2141 69 28 3 chrX 57492458 57492746 -119481394 - AluSp SINE Alu -18 295 1 1098 175 41 161 chrX 57492746 57493106 -119481034 - MLT1A1 LTR MaLR -57 308 1 480 280 33 13 chrX 57493235 57493385 -119480755 + MIR SINE MIR 2 154 -108 2027 80 35 14 chrX 57493475 57493764 -119480376 - AluSx SINE Alu -17 295 1 1242 171 52 87 chrX 57494183 57494492 -119479648 - AluJb SINE Alu -4 298 1 2256 88 0 3 chrX 57494492 57494799 -119479341 - AluSx SINE Alu -6 306 1 280 317 118 37 chrX 57495744 57495990 -119478150 - L2 LINE L2 -54 3259 2994 226 149 0 0 chrX 57496048 57496095 -119478045 - L1MB3 LINE L1 0 6183 6137 1168 112 53 34 chrX 57496117 57496323 -119477817 - L1MB2 LINE L1 -27 6144 5935 1074 131 6 0 chrX 57496324 57496492 -119477648 - AluJo SINE Alu -22 290 122 1687 128 7 37 chrX 57496513 57496672 -119477468 - AluJo SINE Alu -24 288 141 2109 49 8 0 chrX 57496672 57496936 -119477204 - AluY SINE Alu -10 301 36 1687 128 7 37 chrX 57496936 57497073 -119477067 - AluJo SINE Alu -171 141 1 330 317 197 10 chrX 57497076 57497284 -119476856 - L1MB2 LINE L1 -374 5747 5501 1247 175 19 0 chrX 57497423 57497629 -119476511 - MER6B DNA MER2_type 0 210 1 846 158 0 76 chrX 57497649 57497694 -119476446 - AluJo SINE Alu -153 159 112 2139 101 10 0 chrX 57497694 57497990 -119476150 + AluSg SINE Alu 1 299 -11 846 158 0 76 chrX 57497990 57498115 -119476025 - AluJo SINE Alu -200 112 2 2515 241 157 19 chrX 57498156 57498413 -119475727 + L2 LINE L2 851 1071 -2243 1756 181 62 82 chrX 57498413 57498595 -119475545 + MLT1D LTR MaLR 1 185 -320 2128 109 10 0 chrX 57498595 57498898 -119475242 + AluSq SINE Alu 1 306 -7 1756 181 62 82 chrX 57498898 57499230 -119474910 + MLT1D LTR MaLR 185 505 0 2515 241 157 19 chrX 57499230 57500089 -119474051 + L2 LINE L2 1071 2106 -1208 472 289 97 54 chrX 57500107 57500163 -119473977 - L1MC4 LINE L1 -172 7870 7818 2236 96 17 0 chrX 57500163 57500455 -119473685 - AluSx SINE Alu -15 297 1 472 289 97 54 chrX 57500455 57500554 -119473586 - L1MC4 LINE L1 -224 7818 7725 2211 103 10 3 chrX 57500554 57500846 -119473294 - AluSx SINE Alu -18 294 1 472 289 97 54 chrX 57500846 57501336 -119472804 - L1MC4 LINE L1 -317 7725 7196 678 83 0 21 chrX 57501337 57501433 -119472707 - FLAM_C SINE Alu -15 128 35 2269 102 0 3 chrX 57501466 57501761 -119472379 - AluSq SINE Alu -19 294 1 262 284 15 37 chrX 57501826 57501854 -119472286 + L2 LINE L2 2111 2138 -1176 934 107 8 0 chrX 57501854 57501985 -119472155 - FLAM_C SINE Alu 0 133 2 262 284 15 37 chrX 57501985 57502090 -119472050 + L2 LINE L2 2138 2241 -1073 22 0 0 0 chrX 57502114 57502136 -119472004 + AT_rich Low_complexity Low_complexity 1 22 0 268 89 67 0 chrX 57502145 57502190 -119471950 - L1MA6 LINE L1 -1 6299 6252 904 175 7 7 chrX 57502190 57502344 -119471796 - FRAM SINE Alu -11 165 12 1057 113 25 0 chrX 57502358 57502518 -119471622 - L1MA7 LINE L1 0 6291 6128 1399 142 0 9 chrX 57502519 57502730 -119471410 + AluSg/x SINE Alu 86 294 -18 3530 130 31 55 chrX 57502734 57503311 -119470829 - L1MA7 LINE L1 -159 6132 5571 1908 152 0 7 chrX 57503311 57503607 -119470533 - AluJb SINE Alu -18 294 1 3530 130 31 55 chrX 57503607 57503683 -119470457 - L1MA7 LINE L1 -720 5571 5495 1959 152 23 6 chrX 57503683 57504026 -119470114 - LTR19A LTR ERV1 0 486 138 423 57 0 0 chrX 57504038 57504091 -119470049 + LTR10D LTR ERV1 1 53 -460 2236 70 60 0 chrX 57504093 57504377 -119469763 - AluY SINE Alu -10 301 1 56225 70 7 15 chrX 57504379 57505953 -119468187 - HERVFH19I LTR ERV1 -485 7234 5649 5107 34 3 0 chrX 57505953 57506542 -119467598 - LTR10C LTR ERV1 0 591 1 56225 70 7 15 chrX 57506542 57509519 -119464621 - HERVFH19I LTR ERV1 -2070 5649 2650 2218 103 7 0 chrX 57509519 57509811 -119464329 - AluSp SINE Alu -7 306 13 56225 70 7 15 chrX 57509811 57510627 -119463513 - HERVFH19I LTR ERV1 -5069 2650 1829 2088 74 12 0 chrX 57510627 57510883 -119463257 + AluSp SINE Alu 29 287 -26 56225 70 7 15 chrX 57510883 57510931 -119463209 - HERVFH19I LTR ERV1 -5890 1829 1782 2399 70 7 17 chrX 57510931 57511233 -119462907 - AluSq SINE Alu -14 299 1 56225 70 7 15 chrX 57511233 57511392 -119462748 - HERVFH19I LTR ERV1 -5937 1782 1623 2573 70 0 0 chrX 57511392 57511692 -119462448 + AluSg SINE Alu 1 300 -10 56225 70 7 15 chrX 57511692 57513404 -119460736 - HERVFH19I LTR ERV1 -6096 1623 1 2629 130 30 57 chrX 57513404 57513897 -119460243 - LTR19A LTR ERV1 0 486 7 262 59 0 0 chrX 57513906 57513940 -119460200 - LTR19A LTR ERV1 -452 34 1 545 127 9 0 chrX 57513944 57514043 -119460097 - L1MA7 LINE L1 -799 5492 5386 260 239 60 0 chrX 57514043 57514110 -119460030 + L2 LINE L2 2244 2314 -1000 1180 190 5 38 chrX 57514112 57514401 -119459739 + L1 LINE L1 3846 4122 -2024 2233 103 7 7 chrX 57514421 57514722 -119459418 - AluSx SINE Alu -11 301 1 2252 85 21 0 chrX 57514734 57515016 -119459124 - AluSx SINE Alu -24 288 1 2160 122 0 0 chrX 57515019 57515314 -119458826 - AluSx SINE Alu -17 295 1 1442 196 16 121 chrX 57515314 57515576 -119458564 + L1 LINE L1 4372 4660 -1486 1587 115 0 9 chrX 57515576 57515802 -119458338 + AluSg/x SINE Alu 84 307 -5 1442 196 16 121 chrX 57515802 57515881 -119458259 + L1 LINE L1 4660 4746 -1400 637 193 26 0 chrX 57515881 57515995 -119458145 + FLAM_A SINE Alu 1 117 -16 2568 61 0 0 chrX 57516002 57516299 -119457841 - AluY SINE Alu -14 297 1 1442 196 16 121 chrX 57516299 57516453 -119457687 + L1 LINE L1 4752 4823 -1323 201 162 0 0 chrX 57516536 57516573 -119457567 + T-rich Low_complexity Low_complexity 1 37 0 1397 146 112 0 chrX 57517602 57517862 -119456278 + L1MB4 LINE L1 5884 6172 -8 1583 199 89 6 chrX 57517867 57518246 -119455894 - MLT1C LTR MaLR -50 400 6 567 312 17 34 chrX 57518332 57518624 -119455516 - L2 LINE L2 -1192 2122 1836 314 237 26 99 chrX 57518706 57518858 -119455282 - L1MC4 LINE L1 -72 7970 7830 1856 166 106 29 chrX 57518899 57519276 -119454864 - L1ME2 LINE L1 -10 6154 5807 2057 138 0 0 chrX 57519276 57519583 -119454557 - AluSx SINE Alu 0 307 1 2087 103 3 0 chrX 57519588 57519870 -119454270 - AluSx SINE Alu -3 309 27 1856 166 106 29 chrX 57519870 57519901 -119454239 - L1ME2 LINE L1 -360 5804 5707 5465 98 30 8 chrX 57520363 57521126 -119453014 - LTR17 LTR ERV1 0 780 1 1803 130 10 27 chrX 57521329 57521629 -119452511 - AluJb SINE Alu -17 295 1 2051 102 25 7 chrX 57521992 57522295 -119451845 - AluSx SINE Alu 0 308 1 1029 125 6 25 chrX 57522484 57522644 -119451496 - AluJb SINE Alu -9 303 147 396 104 0 60 chrX 57522644 57522711 -119451429 + THE1C LTR MaLR 1 63 -312 370 215 0 38 chrX 57522706 57522785 -119451355 + THE1C LTR MaLR 25 100 -275 * 923 165 116 19 chrX 57523792 57524031 -119450109 - L1P4 LINE L1 -546 5619 5361 786 130 15 30 chrX 57524031 57524205 -119449935 - FLAM_C SINE Alu 0 133 1 1207 167 113 8 chrX 57524223 57524480 -119449660 - L1M4 LINE L1 -1020 5126 4843 1245 241 146 66 chrX 57524480 57525239 -119448901 - L2 LINE L2 -562 2752 1933 1472 162 75 8 chrX 57529714 57529967 -119444173 + Tigger4(Zombi) DNA MER2_type 1 270 -2461 1257 126 93 0 chrX 57529963 57530178 -119443962 + Tigger4(Zombi) DNA MER2_type 2494 2728 -3 * 226 270 101 44 chrX 57530447 57530606 -119443534 - MIR SINE MIR -18 244 77 2923 203 80 32 chrX 57530666 57531441 -119442699 - MER21B LTR ERV1 -51 812 1 413 206 255 20 chrX 57531441 57531684 -119442456 - Charlie7 DNA MER1_type -67 2545 2245 315 230 27 0 chrX 57531744 57531818 -119442322 - Charlie7 DNA MER1_type -482 2130 2055 1559 194 101 52 chrX 57532026 57532150 -119441990 + Charlie4a DNA MER1_type 1 117 -1844 2112 110 125 3 chrX 57532150 57532486 -119441654 + MER51B LTR ERV1 1 377 0 1559 194 101 52 chrX 57532486 57532669 -119441471 + Charlie4a DNA MER1_type 117 289 -1672 1807 131 0 67 chrX 57532669 57532982 -119441158 - AluSx SINE Alu -20 292 1 1559 194 101 52 chrX 57532982 57533072 -119441068 + Charlie4a DNA MER1_type 289 373 -1588 1870 134 10 20 chrX 57533072 57533370 -119440770 - AluJb SINE Alu -17 295 1 1559 194 101 52 chrX 57533370 57533454 -119440686 + Charlie4a DNA MER1_type 373 508 0 1040 218 149 41 chrX 57533610 57534000 -119440140 - L1MC4a LINE L1 -1983 5825 5394 2128 119 17 0 chrX 57534111 57534404 -119439736 - AluSq SINE Alu -15 298 1 2030 137 0 11 chrX 57534721 57535035 -119439105 - AluSx SINE Alu 0 311 1 533 157 116 58 chrX 57535076 57535197 -119438943 + FLAM_A SINE Alu 1 128 -5 1305 176 6 121 chrX 57535228 57535575 -119438565 - 7SLRNA srpRNA srpRNA -12 308 2 1022 140 0 0 chrX 57535577 57535720 -119438420 - 7SLRNA srpRNA srpRNA -177 143 1 21 0 0 0 chrX 57536030 57536051 -119438089 + AT_rich Low_complexity Low_complexity 1 21 0 2316 99 0 0 chrX 57537740 57538034 -119436106 - AluSg SINE Alu -16 294 1 216 225 133 113 chrX 57538110 57538149 -119435991 + MIR SINE MIR 47 84 -178 2206 103 0 0 chrX 57538149 57538451 -119435689 - AluSx SINE Alu 0 302 1 216 225 133 113 chrX 57538451 57538561 -119435579 + MIR SINE MIR 84 200 -62 2081 111 10 7 chrX 57538630 57538928 -119435212 - AluSx SINE Alu -13 299 1 5707 98 40 28 chrX 57539164 57539561 -119434579 - Tigger3b DNA MER2_type -1798 1230 839 2289 92 3 31 chrX 57539561 57539742 -119434398 - AluSp SINE Alu -5 308 138 2313 96 7 0 chrX 57539742 57540035 -119434105 - AluSx SINE Alu -17 295 1 2289 92 3 31 chrX 57540035 57540170 -119433970 - AluSp SINE Alu -175 138 1 5707 98 40 28 chrX 57540170 57540394 -119433746 - Tigger3b DNA MER2_type -2189 839 619 2176 134 0 10 chrX 57540394 57540700 -119433440 - AluSx SINE Alu -9 303 1 5707 98 40 28 chrX 57540700 57540972 -119433168 - Tigger3b DNA MER2_type -2409 619 325 1920 133 0 48 chrX 57541390 57541706 -119432434 + AluJo SINE Alu 1 301 -11 2330 91 0 3 chrX 57542037 57542344 -119431796 + AluSq SINE Alu 3 308 -5 534 225 50 93 chrX 57542663 57542718 -119431422 - MER5B DNA MER1_type -1 177 121 2317 110 0 0 chrX 57542718 57543019 -119431121 - AluSx SINE Alu -11 301 1 534 225 50 93 chrX 57543019 57543145 -119430995 - MER5B DNA MER1_type -57 121 4 2330 94 0 3 chrX 57543319 57543618 -119430522 - AluSx SINE Alu -14 298 1 204 40 0 0 chrX 57543793 57543818 -119430322 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 688 220 18 0 chrX 57543820 57543988 -119430152 - L1MA4 LINE L1 -1 6299 6129 2512 155 7 20 chrX 57544429 57544506 -119429634 + L1MD1 LINE L1 5725 5802 -2193 1379 121 84 0 chrX 57544506 57544721 -119429419 - MER46A DNA MER2_type 0 236 4 2512 155 7 20 chrX 57544721 57545087 -119429053 + L1MD1 LINE L1 5802 7921 -74 1210 152 0 0 chrX 57545093 57545271 -119428869 - FRAM SINE Alu 0 176 1 393 78 31 0 chrX 57545273 57545337 -119428803 + L1MD2 LINE L1 6292 6357 -2 846 143 0 15 chrX 57545464 57545597 -119428543 + FLAM_C SINE Alu 3 133 0 2464 79 0 3 chrX 57545630 57545933 -119428207 + AluSq SINE Alu 2 303 -10 1920 149 7 17 chrX 57546469 57546771 -119427369 - AluJo SINE Alu -13 299 1 317 221 15 0 chrX 57546810 57546878 -119427262 + L2 LINE L2 3204 3272 0 1705 118 85 26 chrX 57547337 57547607 -119426533 - AluSg SINE Alu -5 305 20 1551 96 45 9 chrX 57547961 57548181 -119425959 + MER30 DNA MER1_type 1 228 -2 14346 188 21 20 chrX 57748182 57748287 -119225853 + L1PB2 LINE L1 49 152 -7413 2594 156 29 2 chrX 57748287 57748704 -119225436 - MSTA LTR MaLR 0 428 1 14346 188 21 20 chrX 57748704 57751316 -119222824 + L1PB2 LINE L1 152 2769 -4796 * 44026 48 2 1 chrX 57751314 57757461 -119216679 + L1PA4 LINE L1 1 6152 -3 841 124 8 12 chrX 57757471 57757620 -119216520 + L1PB2 LINE L1 2743 3274 -4291 23 33 0 0 chrX 57757948 57757978 -119216162 + AT_rich Low_complexity Low_complexity 1 30 0 1113 210 21 0 chrX 57758048 57758286 -119215854 - L1MB4 LINE L1 -37 6143 5901 * 5792 129 26 35 chrX 57758280 57759238 -119214902 + L1PB2 LINE L1 6257 7194 -376 351 0 0 0 chrX 57759238 57759277 -119214863 + (TG)n Simple_repeat Simple_repeat 2 40 0 5792 129 26 35 chrX 57759277 57759649 -119214491 + L1PB2 LINE L1 7194 7568 -2 762 188 121 25 chrX 57759651 57759890 -119214250 - L1MC4 LINE L1 -10 8032 7771 720 262 50 17 chrX 57759913 57760477 -119213663 + L1M4 LINE L1 2009 2594 -3788 1169 251 47 35 chrX 57760537 57760559 -119213581 + L1M4 LINE L1 2611 2631 -3751 2753 130 20 30 chrX 57760559 57760997 -119213143 - Tigger2a DNA MER2_type 0 434 1 1169 251 47 35 chrX 57760997 57761377 -119212763 + L1M4 LINE L1 2631 3018 -3364 568 105 35 0 chrX 57761506 57761592 -119212548 - L1MB5 LINE L1 -8 6166 6078 3287 234 47 15 chrX 57761592 57762553 -119211587 - L1M4 LINE L1 -1493 4653 3662 2099 184 16 16 chrX 57762556 57762941 -119211199 + MER54A LTR ERVL 3 387 -514 432 229 0 0 chrX 57762941 57763072 -119211068 - L1M4 LINE L1 -1647 4499 4369 1082 205 45 0 chrX 57763073 57763341 -119210799 + L1M4 LINE L1 4543 4822 -1560 2048 122 0 11 chrX 57763413 57763699 -119210441 - AluSx SINE Alu -29 283 1 1614 268 17 4 chrX 57763699 57764165 -119209975 - L1M4 LINE L1 -1835 4311 3840 769 200 64 28 chrX 57764194 57764444 -119209696 - L1MA8 LINE L1 -24 6267 6009 387 262 35 70 chrX 57764826 57765055 -119209085 + HAL1 LINE L1 2245 2465 -42 283 281 134 41 chrX 57765866 57766037 -119208103 - MIR SINE MIR -16 246 60 260 346 23 33 chrX 57766409 57766623 -119207517 - L1MC/D LINE L1 -1921 5887 5676 223 200 22 0 chrX 57767151 57767196 -119206944 + CT-rich Low_complexity Low_complexity 5 50 0 793 298 156 36 chrX 57767526 57768636 -119205504 + L2 LINE L2 2049 3313 0 296 279 9 54 chrX 57770172 57770356 -119203784 + L2 LINE L2 2912 3083 -189 258 192 0 0 chrX 57771053 57771105 -119203035 + C-rich Low_complexity Low_complexity 1 52 0 225 94 0 0 chrX 57771832 57771864 -119202276 + (TC)n Simple_repeat Simple_repeat 1 32 0 209 208 0 21 chrX 57771879 57771927 -119202213 + CT-rich Low_complexity Low_complexity 3 49 0 284 228 33 33 chrX 57772098 57772190 -119201950 - L1ME4a LINE L1 -66 6055 5964 440 261 51 109 chrX 57772319 57772694 -119201446 - L1ME4a LINE L1 -260 5861 5509 336 48 0 0 chrX 57772724 57772766 -119201374 + (TG)n Simple_repeat Simple_repeat 2 43 0 221 250 0 0 chrX 57773265 57773317 -119200823 + (TATG)n Simple_repeat Simple_repeat 4 55 0 316 314 32 11 chrX 57773323 57773508 -119200632 - L1ME LINE L1 -341 5780 5592 31 82 0 0 chrX 57773687 57773760 -119200380 + AT_rich Low_complexity Low_complexity 1 73 0 354 312 91 40 chrX 57773894 57774170 -119199970 - L1ME4a LINE L1 -240 6117 5828 1605 206 52 2 chrX 57775222 57775630 -119198510 - L1ME4a LINE L1 -1505 4877 4450 * 5921 160 39 9 chrX 57775627 57776165 -119197975 + L1MA9 LINE L1 4741 5262 -1050 201 74 0 0 chrX 57776165 57776192 -119197948 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 5921 160 39 9 chrX 57776192 57777182 -119196958 + L1MA9 LINE L1 5262 6312 0 1693 268 21 8 chrX 57777178 57777659 -119196481 - L1ME4a LINE L1 -1918 4464 3978 * 2057 172 27 25 chrX 57777670 57778076 -119196064 - L1MB4 LINE L1 -4 6176 5770 4845 179 22 4 chrX 57778086 57779523 -119194617 - L1MB1 LINE L1 0 6168 4706 422 284 9 9 chrX 57779531 57779647 -119194493 - L1M3d LINE L1 -5737 154 39 648 165 33 118 chrX 57779677 57779889 -119194251 - L1ME4a LINE L1 -2391 3991 3798 34 24 0 0 chrX 57779896 57779937 -119194203 + AT_rich Low_complexity Low_complexity 1 41 0 5630 142 53 17 chrX 57779938 57781284 -119192856 - SVA Other Other -518 1382 432 4542 193 17 44 chrX 57781362 57782200 -119191940 - SVA Other Other -518 868 54 471 48 0 0 chrX 57782200 57782262 -119191878 + (GGGAGA)n Simple_repeat Simple_repeat 4 65 0 3856 237 57 28 chrX 57782264 57783728 -119190412 - L1ME4a LINE L1 -2569 3813 2307 44384 48 2 2 chrX 57783737 57789888 -119184252 - L1PA3 LINE L1 0 6155 1 5602 156 25 3 chrX 57790091 57791059 -119183081 - L1MA3 LINE L1 0 6305 5317 * 30771 121 14 56 chrX 57791053 57797483 -119176657 - L1PA7 LINE L1 -4 6150 12 5156 208 29 3 chrX 57797496 57798982 -119175158 - L1M4 LINE L1 -816 5330 3784 35382 104 10 1 chrX 57798983 57804099 -119170041 + HERVL-A2 LTR ERVL 491 5654 0 1849 166 62 31 chrX 57804099 57804633 -119169507 + MLT2A2 LTR ERVL 1 554 0 381 329 43 43 chrX 57804701 57805121 -119169019 - MER110-int LTR ERV1 -2086 2561 2142 347 313 70 22 chrX 57806851 57807081 -119167059 - MER110-int LTR ERV1 -4078 569 329 2257 204 80 11 chrX 57807110 57807635 -119166505 - ERVL-B2 LTR ERVL -5201 563 3 2730 175 58 2 chrX 57807640 57808126 -119166014 - MLT2B2 LTR ERVL -2 513 1 2450 255 33 1 chrX 57808126 57808970 -119165170 + L1MB3 LINE L1 3042 3912 -2234 2050 146 107 3 chrX 57808976 57809359 -119164781 + MSTA LTR MaLR 6 428 0 936 213 28 12 chrX 57809359 57809608 -119164532 + L1MB3 LINE L1 3908 4160 -1986 312 143 0 0 chrX 57809620 57809676 -119164464 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 7112 25 0 3 chrX 57809724 57810605 -119163535 - L1PA2 LINE L1 0 6155 5278 459 46 31 0 chrX 57810601 57810666 -119163474 + L1PA2 LINE L1 5215 5281 -865 * 2967 240 57 9 chrX 57810655 57811686 -119162454 + L1MB3 LINE L1 4217 5297 -849 41816 43 2 1 chrX 57811716 57817870 -119156270 + L1PA3 LINE L1 1 6155 0 3449 197 22 16 chrX 57817860 57818045 -119156095 + L1MB3 LINE L1 5296 5478 -705 * 333 0 0 0 chrX 57818045 57818082 -119156058 + (CA)n Simple_repeat Simple_repeat 2 38 0 3449 197 22 16 chrX 57818082 57818687 -119155453 + L1MB3 LINE L1 5478 6089 -94 577 232 7 7 chrX 57818721 57818863 -119155277 - L1PA13 LINE L1 -6022 765 624 * 2418 176 0 2 chrX 57818857 57819272 -119154868 - L1PA13 LINE L1 -6373 414 1 2435 181 4 0 chrX 57819280 57819761 -119154379 - L1M2 LINE L1 -4392 2457 1975 * 4463 236 45 7 chrX 57819755 57820809 -119153331 - L1M2 LINE L1 -5752 1097 4 2080 261 30 6 chrX 57820834 57821905 -119152235 - L1MDa LINE L1 -3113 3427 2338 719 190 23 6 chrX 57821922 57822096 -119152044 - L1MB4 LINE L1 -6 6174 5998 4950 235 44 83 chrX 57822114 57825902 -119148238 + L1MA7 LINE L1 22 3957 -2393 2325 106 0 0 chrX 57825902 57826204 -119147936 + AluSx SINE Alu 1 302 -10 2315 102 0 3 chrX 57826204 57826499 -119147641 + AluSg SINE Alu 1 294 -16 4950 235 44 83 chrX 57826499 57826718 -119147422 + L1MA7 LINE L1 3956 3496 -2854 6387 71 7 294 chrX 57826718 57828657 -119145483 + SVA Other Other 3 1386 0 4950 235 44 83 chrX 57828657 57829030 -119145110 + L1MA7 LINE L1 3495 3881 -2469 866 205 88 24 chrX 57829037 57829329 -119144811 - MSTC LTR MaLR -61 313 19 6857 178 38 28 chrX 57829332 57829827 -119144313 + L1MA7 LINE L1 3948 4437 -2058 2355 178 41 5 chrX 57829827 57830238 -119143902 + MSTB LTR MaLR 1 426 0 6857 178 38 28 chrX 57830238 57832257 -119141883 + L1MA7 LINE L1 4437 6464 -31 383 247 65 0 chrX 57832261 57832354 -119141786 + MER8 DNA MER2_type 125 223 -16 * 1452 187 120 20 chrX 57832351 57832768 -119141372 - MLT2A1 LTR ERVL -96 458 1 414 314 0 0 chrX 57833379 57833516 -119140624 + MER4A-int LTR ERV1 5633 5769 -1353 623 313 21 9 chrX 57834077 57834369 -119139771 + MER4A-int LTR ERV1 6404 7309 -447 694 247 21 5 chrX 57834700 57834890 -119139250 + MER4A-int LTR ERV1 6398 6590 -8 1074 163 9 160 chrX 57834901 57835338 -119138802 + MER4A LTR ERV1 1 217 -248 1132 180 65 8 chrX 57835358 57835603 -119138537 + MSTD-int LTR MaLR 1471 1729 -6 2297 170 0 10 chrX 57835610 57836005 -119138135 + MSTD LTR MaLR 6 396 0 8015 153 33 20 chrX 57836005 57837452 -119136688 + ERVL LTR ERVL 1562 3027 -2737 194 0 39 0 chrX 57837466 57837492 -119136648 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 7848 17 0 0 chrX 57837508 57838583 -119135557 - L1PA2 LINE L1 -3 6152 5078 13247 28 0 0 chrX 57838583 57840218 -119133922 + L1PA2 LINE L1 3442 5076 -1070 3920 120 22 7 chrX 57840219 57840809 -119133331 + ERVL LTR ERVL 3016 3614 -2150 601 107 137 15 chrX 57840809 57840940 -119133200 + MLT2B2 LTR ERVL 369 515 0 416 91 15 0 chrX 57841682 57841748 -119132392 + (TA)n Simple_repeat Simple_repeat 1 67 0 25 90 0 0 chrX 57841841 57841908 -119132232 + AT_rich Low_complexity Low_complexity 1 67 0 22 70 0 0 chrX 57842210 57842253 -119131887 + AT_rich Low_complexity Low_complexity 1 43 0 343 259 135 38 chrX 57842255 57842595 -119131545 + L1ME LINE L1 5425 5797 -324 294 148 0 0 chrX 57844186 57844240 -119129900 + (CA)n Simple_repeat Simple_repeat 2 55 0 287 259 51 109 chrX 57844270 57844645 -119129495 + L1ME LINE L1 5509 5861 -260 295 259 33 71 chrX 57844896 57845108 -119129032 - HAL1 LINE L1 -59 2448 2245 9648 172 12 99 chrX 57845588 57848615 -119125525 - L1MA1 LINE L1 0 6302 3803 297 51 0 0 chrX 57848615 57848654 -119125486 + (TTG)n Simple_repeat Simple_repeat 2 40 0 9648 172 12 99 chrX 57848654 57850083 -119124057 - L1MA1 LINE L1 -2499 3803 2251 1167 21 0 0 chrX 57850083 57850224 -119123916 - L1P3 LINE L1 -615 5539 5399 302 316 30 0 chrX 57850335 57850503 -119123637 - L1M4 LINE L1 -1071 5573 5401 4130 170 28 5 chrX 57850600 57852187 -119121953 - L1PA16 LINE L1 -180 5986 4366 1591 263 14 50 chrX 57852197 57852702 -119121438 + L2 LINE L2 2824 3310 -3 479 274 72 33 chrX 57852888 57853041 -119121099 + L2 LINE L2 3112 3270 -2 2248 113 10 0 chrX 57853150 57853451 -119120689 + AluSg SINE Alu 1 304 -6 368 270 132 13 chrX 57853769 57853928 -119120212 - MIR SINE MIR -4 258 81 3055 295 14 40 chrX 57906301 57907385 -119066755 - L1PA13 LINE L1 -5730 1057 2 1297 254 89 19 chrX 57907406 57908180 -119065960 - L1M4c LINE L1 -2882 3762 2935 3172 262 52 26 chrX 57908197 57910271 -119063869 - L1M4 LINE L1 -4520 2126 3 620 251 61 83 chrX 57910258 57910763 -119063377 - L1M4c LINE L1 -4710 1936 1443 * 23 0 0 0 chrX 57910764 57910787 -119063353 + AT_rich Low_complexity Low_complexity 1 23 0 203 246 23 23 chrX 57911186 57911316 -119062824 + (CACAA)n Simple_repeat Simple_repeat 1 130 0 205 254 17 35 chrX 57911361 57911534 -119062606 + (CAAA)n Simple_repeat Simple_repeat 4 173 0 4549 259 70 31 chrX 57911646 57912378 -119061762 - L1PA13 LINE L1 -3102 3695 2993 336 64 0 0 chrX 57912378 57912425 -119061715 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 4549 259 70 31 chrX 57912425 57914541 -119059599 - L1PA13 LINE L1 -3804 2993 695 1994 255 15 26 chrX 57914825 57915355 -119058785 - L1PA13 LINE L1 -6263 524 1 22 56 0 0 chrX 57915452 57915488 -119058652 + AT_rich Low_complexity Low_complexity 1 36 0 243 146 0 0 chrX 57915708 57915749 -119058391 + (CATA)n Simple_repeat Simple_repeat 4 44 0 21 57 0 0 chrX 57916110 57916145 -119057995 + AT_rich Low_complexity Low_complexity 1 35 0 6805 68 1 9 chrX 57917164 57918383 -119055757 + L1PA7 LINE L1 4944 6156 0 300 234 75 21 chrX 57918658 57918752 -119055388 - L1 LINE L1 -1432 4714 4616 12691 178 33 5 chrX 57918879 57919264 -119054876 - L1PB1 LINE L1 0 6867 6494 233 29 29 0 chrX 57919264 57919298 -119054842 + (TA)n Simple_repeat Simple_repeat 1 35 0 12691 178 33 5 chrX 57919298 57919758 -119054382 - L1PB1 LINE L1 -373 6494 6048 2299 107 0 0 chrX 57919758 57920058 -119054082 - AluY SINE Alu -11 300 1 12691 178 33 5 chrX 57920058 57925781 -119048359 - L1PB1 LINE L1 -819 6048 1 10601 272 39 25 chrX 57925784 57928916 -119045224 - L1PA12 LINE L1 -1489 6095 3006 204 67 0 0 chrX 57928916 57928946 -119045194 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1956 170 0 0 chrX 57928948 57929230 -119044910 - AluSx SINE Alu -30 282 1 10601 272 39 25 chrX 57929230 57932646 -119041494 - L1PA12 LINE L1 -4578 3006 1 248 207 92 46 chrX 57932686 57932773 -119041367 + L1M4b LINE L1 11 101 -6758 711 88 0 20 chrX 57932781 57932883 -119041257 + L1PA10 LINE L1 5 104 -6357 * 26182 129 17 14 chrX 57932871 57937450 -119036690 + L1PA10 LINE L1 427 5055 -1428 197 40 20 60 chrX 57937450 57937500 -119036640 + (CAAAA)n Simple_repeat Simple_repeat 2 49 0 26182 129 17 14 chrX 57937500 57938926 -119035214 + L1PA10 LINE L1 5055 6475 -8 440 252 21 0 chrX 57938915 57939058 -119035082 + L1M4b LINE L1 1622 1767 -5088 * 32612 37 31 2 chrX 57939070 57943298 -119030842 + L1P LINE L1 11 4363 -1783 26765 123 7 8 chrX 57943409 57948783 -119025357 + L1PA7 LINE L1 786 6151 -3 2717 181 15 23 chrX 57948826 57949474 -119024666 + L1PA11 LINE L1 2827 3469 -2677 699 219 0 0 chrX 57949473 57949619 -119024521 + L1P LINE L1 4114 4259 -1887 * 10073 156 14 3 chrX 57949620 57949824 -119024316 + L1PA11 LINE L1 3476 3676 -2498 255 31 0 0 chrX 57949824 57949856 -119024284 + (CAA)n Simple_repeat Simple_repeat 3 34 0 10073 156 14 3 chrX 57949856 57952301 -119021839 + L1PA11 LINE L1 3676 6171 -3 6096 105 11 1 chrX 57951429 57952304 -119021836 + L1PA11 LINE L1 5291 6174 0 3687 214 17 5 chrX 57952307 57953138 -119021002 - L1 LINE L1 -1812 4334 3494 597 199 30 0 chrX 57953148 57953279 -119020861 - L1PA16 LINE L1 -9 6157 6023 5352 128 11 10 chrX 57953285 57955091 -119019049 - L1PA8A LINE L1 0 6131 4328 1771 146 6 78 chrX 57955091 57955426 -119018714 + AluSx SINE Alu 1 311 -1 5352 128 11 10 chrX 57955426 57958178 -119015962 - L1PA8A LINE L1 -1803 4328 1496 28426 138 12 56 chrX 57958181 57964622 -119009518 + L1PA7 LINE L1 4 6153 -1 854 155 0 0 chrX 57964622 57964751 -119009389 - MER84 LTR ERVI -378 129 1 426 151 27 0 chrX 57964754 57964827 -119009313 - MER84 LTR ERVI -427 80 6 806 243 54 14 chrX 57964827 57965331 -119008809 - L1M4c LINE L1 -4191 2455 1853 13607 158 27 5 chrX 57966277 57968643 -119005497 + Tigger1 DNA MER2_type 1 2418 0 9176 240 15 12 chrX 57968683 57971449 -119002691 + L1PA15-16 LINE L1 2693 5466 -1383 * 10262 192 53 17 chrX 57971448 57973794 -119000346 + L1MA3 LINE L1 340 3456 -4109 2466 61 0 0 chrX 57973794 57974089 -119000051 - AluY SINE Alu -16 295 1 10262 192 53 17 chrX 57974089 57974209 -118999931 + L1MA3 LINE L1 3456 3570 -3995 943 203 0 14 chrX 57974209 57974426 -118999714 - L1M1 LINE L1 -4299 3266 3053 * 13781 190 37 10 chrX 57974405 57977829 -118996311 + L1MA3 LINE L1 3552 7067 -657 3686 139 6 55 chrX 57977850 57978371 -118995769 + L1MA3 LINE L1 7047 7525 -199 2331 77 0 0 chrX 57978371 57978656 -118995484 - AluY SINE Alu -26 285 1 3686 139 6 55 chrX 57978656 57978847 -118995293 + L1MA3 LINE L1 7525 7724 0 286 113 0 0 chrX 57978855 57978908 -118995232 + L1MB4 LINE L1 6128 6180 0 2148 226 43 81 chrX 57978941 57980004 -118994136 - L1M4c LINE L1 -4775 1871 833 286 171 13 26 chrX 57980029 57980105 -118994035 + GA-rich Low_complexity Low_complexity 1 75 0 1249 321 67 35 chrX 57980241 57980961 -118993179 - L1M4c LINE L1 -5798 744 2 1115 233 140 70 chrX 57981056 57981528 -118992612 - MLT1D LTR MaLR 0 505 1 371 251 45 95 chrX 57982178 57982357 -118991783 - MIR3 SINE MIR -14 194 25 2364 63 10 23 chrX 57982385 57982685 -118991455 - AluY SINE Alu -15 296 1 564 180 129 0 chrX 57983019 57983036 -118991104 - L1MA10 LINE L1 -1 6333 6317 398 295 79 21 chrX 57983036 57983226 -118990914 - L1ME1 LINE L1 -12 6154 5954 245 239 60 0 chrX 57983546 57983613 -118990527 - L1ME4a LINE L1 -71 6050 5980 293 163 41 0 chrX 57984207 57984256 -118989884 + L2 LINE L2 3255 3305 -8 297 321 53 8 chrX 57984784 57984915 -118989225 + MIR SINE MIR 50 186 -76 332 234 117 54 chrX 57986511 57986622 -118987518 - MIR SINE MIR -50 212 95 26 30 0 0 chrX 57986848 57986881 -118987259 + AT_rich Low_complexity Low_complexity 1 33 0 243 272 75 5 chrX 57987818 57987925 -118986215 - MIR SINE MIR -53 155 34 192 77 0 0 chrX 57988660 57988686 -118985454 + (A)n Simple_repeat Simple_repeat 1 26 0 219 133 89 0 chrX 57990813 57990858 -118983282 - L2 LINE L2 0 3313 3265 556 186 24 32 chrX 57994216 57994340 -118979800 - L2 LINE L2 -4 3309 3187 474 274 62 20 chrX 57994823 57994969 -118979171 + MIR SINE MIR 84 235 -27 186 185 0 200 chrX 57994942 57995007 -118979133 + L2 LINE L2 3213 3264 -8 * 812 280 209 9 chrX 57994981 57995638 -118978502 - L2 LINE L2 -4 3309 2527 581 296 90 11 chrX 57995743 57995932 -118978208 - MIR SINE MIR -39 223 20 294 214 214 78 chrX 57996119 57996273 -118977867 - MIR3 SINE MIR -18 190 16 921 159 6 19 chrX 57996374 57996531 -118977609 - FRAM SINE Alu -11 155 1 193 319 89 30 chrX 57997456 57997625 -118976515 - MIR3 SINE MIR -27 181 3 * 282 322 16 8 chrX 57997625 57997715 -118976425 + MIR SINE MIR 108 198 -64 1457 239 28 20 chrX 57998859 57999360 -118974780 - L1MCa LINE L1 -3213 3213 2709 * 3648 31 0 0 chrX 57999353 57999801 -118974339 - L1PA4 LINE L1 -754 5392 4945 6345 29 7 0 chrX 57999801 58000559 -118973581 + L1PA4 LINE L1 5388 6150 -5 944 201 19 53 chrX 58001389 58001743 -118972397 - L1MCa LINE L1 -3874 2733 2339 1552 218 46 3 chrX 58001743 58002091 -118972049 + MLT1A1 LTR MaLR 1 363 -2 944 201 19 53 chrX 58002091 58002172 -118971968 - L1MCa LINE L1 -4268 2339 2257 2066 150 34 6 chrX 58002172 58002526 -118971614 + THE1B LTR MaLR 1 364 0 10382 116 38 1 chrX 58002526 58004049 -118970091 + THE1B-int LTR MaLR 1 1580 0 1983 168 28 11 chrX 58004049 58004407 -118969733 + THE1B LTR MaLR 1 364 0 672 225 11 0 chrX 58004418 58004605 -118969535 - L1MCa LINE L1 -4183 2243 2055 180 0 0 0 chrX 58004605 58004625 -118969515 + (CA)n Simple_repeat Simple_repeat 1 20 0 2171 196 190 21 chrX 58004627 58005447 -118968693 - L1MCa LINE L1 -4433 1993 1035 942 225 106 50 chrX 58005455 58006059 -118968081 + L1MEc LINE L1 1835 2472 -3924 * 40628 53 4 1 chrX 58006058 58012182 -118961958 + L1PA4 LINE L1 4 6147 -8 5138 119 18 6 chrX 58012190 58013047 -118961093 + L1PA14 LINE L1 5293 6159 -2 636 217 7 0 chrX 58013040 58013192 -118960948 + L1MB8 LINE L1 5816 5968 -210 * 864 236 78 9 chrX 58013200 58013522 -118960618 + L1MEc LINE L1 2419 2762 -3453 * 16426 196 10 7 chrX 58013518 58018061 -118956079 - L1PA14 LINE L1 -144 6017 1464 7626 136 5 0 chrX 58018060 58019283 -118954857 + L1PA14 LINE L1 1672 2900 -4681 * 235 215 0 15 chrX 58019281 58019346 -118954794 - L1MCa LINE L1 -5377 1049 986 * 1082 215 25 0 chrX 58019342 58019584 -118954556 - L1MCa LINE L1 -6082 344 97 * 5186 104 8 1 chrX 58019575 58020343 -118953797 - L1PA10 LINE L1 -10 7596 6824 1696 88 12 0 chrX 58020346 58020597 -118953543 - L1PA10 LINE L1 -5260 2321 2068 1258 150 22 0 chrX 58020592 58020819 -118953321 - L1P LINE L1 -1756 5828 5597 * 1114 8 0 0 chrX 58020812 58020946 -118953194 - L1PA3 LINE L1 -634 5521 5388 * 5268 31 0 0 chrX 58020946 58021584 -118952556 + L1PA3 LINE L1 5538 6177 0 308 252 8 87 chrX 58021635 58021762 -118952378 - MIR3 SINE MIR -34 174 58 531 276 192 10 chrX 58021953 58022156 -118951984 - MIR SINE MIR -3 259 20 2081 204 29 5 chrX 58022414 58022830 -118951310 + MSTA LTR MaLR 3 428 0 8889 173 34 6 chrX 58022830 58024436 -118949704 + MSTA-int LTR MaLR 1 1651 0 2079 163 53 19 chrX 58024437 58024621 -118949519 + MSTA LTR MaLR 2 178 -250 1026 80 0 0 chrX 58024621 58024759 -118949381 + L1PA5 LINE L1 6013 6150 -4 2079 163 53 19 chrX 58024759 58024986 -118949154 + MSTA LTR MaLR 178 427 -1 424 213 0 142 chrX 58025668 58025823 -118948317 - MIR SINE MIR -56 152 20 1973 155 0 13 chrX 58026205 58026515 -118947625 + AluSx SINE Alu 1 306 -6 684 316 102 38 chrX 58027213 58027394 -118946746 - L2 LINE L2 -6 3307 3139 318 50 0 0 chrX 58027394 58027434 -118946706 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 450 0 0 0 chrX 58027433 58027483 -118946657 + (GA)n Simple_repeat Simple_repeat 2 51 0 684 316 102 38 chrX 58027434 58027943 -118946197 - L2 LINE L2 -174 3139 2635 877 199 75 5 chrX 58028117 58028195 -118945945 + MER20 DNA MER1_type 5 76 -143 309 100 0 0 chrX 58028195 58028245 -118945895 + (TG)n Simple_repeat Simple_repeat 1 50 0 877 199 75 5 chrX 58028245 58028367 -118945773 + MER20 DNA MER1_type 76 219 0 294 290 130 19 chrX 58028510 58028672 -118945468 - MIR3 SINE MIR -15 193 14 180 298 0 0 chrX 58029773 58029820 -118944320 + L2 LINE L2 3267 3313 0 662 173 0 8 chrX 58030326 58030453 -118943687 - L1MA9 LINE L1 -52 6260 6135 451 205 0 68 chrX 58030454 58030571 -118943569 - L1M1 LINE L1 -6899 666 558 * 1592 233 31 0 chrX 58030569 58031015 -118943125 + L1 LINE L1 3274 3733 -2413 494 127 76 59 chrX 58031018 58031136 -118943004 + L1M1 LINE L1 3545 3664 -3901 * 6314 178 39 11 chrX 58031135 58033346 -118940794 - L1 LINE L1 -2894 4671 2405 29323 111 16 56 chrX 58033347 58039747 -118934393 - L1PA7 LINE L1 -4 6150 12 11407 187 33 14 chrX 58039757 58042036 -118932104 - L1 LINE L1 -5150 2415 93 432 309 68 6 chrX 58042040 58042202 -118931938 + L1PA13 LINE L1 1052 1223 -6351 395 280 0 0 chrX 58042488 58042588 -118931552 + L1PA13 LINE L1 2084 2183 -5398 368 170 138 11 chrX 58042900 58042994 -118931146 - L1PA15-16 LINE L1 -4118 3447 3342 4641 230 43 4 chrX 58043206 58044199 -118929941 - L1PA15-16 LINE L1 -6442 1123 84 432 0 0 0 chrX 58044199 58044247 -118929893 + (TG)n Simple_repeat Simple_repeat 2 49 0 4641 230 43 4 chrX 58044247 58044322 -118929818 - L1PA15-16 LINE L1 -7481 84 13 621 204 72 30 chrX 58044334 58044511 -118929629 - MER4D-int LTR ERV1 -5237 2300 870 260 135 19 19 chrX 58044518 58044570 -118929570 - LTR49 LTR ERV1 -281 314 263 1156 180 88 40 chrX 58044597 58045182 -118928958 - MER4D-int LTR ERV1 -5751 847 90 4793 142 37 18 chrX 58045248 58046103 -118928037 - MER4D LTR ERV1 0 872 1 2111 219 115 105 chrX 58046103 58046980 -118927160 - L1M4 LINE L1 -3573 2809 1942 3069 138 29 40 chrX 58046980 58047525 -118926615 + L1PA15 LINE L1 5614 6152 -13 2111 219 115 105 chrX 58047525 58047700 -118926440 - L1M4 LINE L1 -4440 1942 1770 881 148 7 0 chrX 58047700 58047849 -118926291 + MER4D LTR ERV1 744 893 -10 2111 219 115 105 chrX 58047849 58048413 -118925727 - L1M4 LINE L1 -4612 1770 1213 1955 141 3 3 chrX 58048413 58048703 -118925437 - AluSx SINE Alu -22 290 1 2111 219 115 105 chrX 58048703 58048829 -118925311 - L1M4 LINE L1 -5169 1213 1090 1930 169 3 3 chrX 58048829 58049130 -118925010 - AluSx SINE Alu -11 301 1 2111 219 115 105 chrX 58049130 58049234 -118924906 - L1M4 LINE L1 -5292 1090 795 284 250 23 23 chrX 58049255 58049343 -118924797 - L1M3e LINE L1 -5112 1918 1831 235 267 29 29 chrX 58049346 58049451 -118924689 - L1M4 LINE L1 -5715 669 565 4253 120 32 33 chrX 58049453 58050563 -118923577 + MER11A LTR ERVK 1 1071 0 1644 245 44 72 chrX 58050686 58051254 -118922886 - MLT2B3 LTR ERVL -2 552 1 637 56 243 0 chrX 58051778 58051885 -118922255 - L1PA7 LINE L1 -3 6151 6019 7467 83 44 2 chrX 58051917 58057742 -118916398 - L1PA7 LINE L1 -3 6151 52 12345 121 12 50 chrX 58057742 58058108 -118916032 - L1P3 LINE L1 -3955 2506 2128 1896 154 7 3 chrX 58058108 58058401 -118915739 + AluSq SINE Alu 1 294 -19 12345 121 12 50 chrX 58058401 58060557 -118913583 - L1P3 LINE L1 -4333 2128 3 402 100 0 0 chrX 58060980 58061040 -118913100 + (TG)n Simple_repeat Simple_repeat 2 61 0 4440 206 40 31 chrX 58061081 58062190 -118911950 - L1MC3 LINE L1 -96 7689 6571 240 272 0 22 chrX 58062184 58062276 -118911864 + L1MC4 LINE L1 6614 6703 -1339 * 4680 237 29 35 chrX 58062230 58063977 -118910163 - L1MC3 LINE L1 -743 5403 4906 2540 241 48 19 chrX 58063983 58064887 -118909253 - L1MC3 LINE L1 -1420 4726 3797 1269 140 0 0 chrX 58064906 58065106 -118909034 + L1PB1 LINE L1 1 200 -6663 7152 52 1 0 chrX 58065125 58066708 -118907432 - L1PA4 LINE L1 -1 6154 4572 9016 172 54 5 chrX 58066708 58070521 -118903619 + L1PB1 LINE L1 640 4808 -2054 3460 72 0 7 chrX 58070525 58070968 -118903172 + MLT2A1 LTR ERVL 5 444 0 13664 80 15 1 chrX 58070968 58071904 -118902236 + HERVL-A1 LTR ERVL 1 975 -4679 1764 125 12 0 chrX 58071904 58072160 -118901980 + AluSc SINE Alu 41 299 -10 13664 80 15 1 chrX 58072160 58073006 -118901134 + HERVL-A1 LTR ERVL 975 1808 -3846 * 26777 92 2 3 chrX 58072997 58076525 -118897615 + HERVL-A1 LTR ERVL 2083 5607 -47 1417 111 0 0 chrX 58076551 58076740 -118897400 + AluY SINE Alu 122 310 -1 323 164 0 0 chrX 58076740 58076795 -118897345 + HERVL-A1 LTR ERVL 5600 5654 0 2925 91 18 2 chrX 58076795 58077189 -118896951 + MLT2A1 LTR ERVL 1 400 -44 3961 253 67 4 chrX 58077190 58078362 -118895778 + L1PB1 LINE L1 4833 6078 -784 4383 113 38 6 chrX 58078365 58078724 -118895416 + L1PB1 LINE L1 6133 6479 -388 375 23 0 0 chrX 58078724 58078768 -118895372 + (TA)n Simple_repeat Simple_repeat 2 45 0 4383 113 38 6 chrX 58078768 58079113 -118895027 + L1PB1 LINE L1 6479 6860 -7 447 73 0 0 chrX 58079134 58079202 -118894938 + (CATA)n Simple_repeat Simple_repeat 2 69 0 759 286 73 26 chrX 58079205 58079695 -118894445 - L1M4 LINE L1 -2339 4305 3793 368 211 30 108 chrX 58079698 58079864 -118894276 - L1M4 LINE L1 -4997 1649 1497 1742 218 53 29 chrX 58079864 58080313 -118893827 - MLT1C LTR MaLR 0 467 8 1038 232 51 6 chrX 58080320 58080652 -118893488 - L1M4 LINE L1 -5037 1505 1159 405 261 43 9 chrX 58080647 58080762 -118893378 + L1PB1 LINE L1 15 133 -7432 * 11024 161 78 37 chrX 58080758 58082961 -118891179 + L1PB1 LINE L1 1103 3396 -4169 2500 95 56 0 chrX 58082984 58083341 -118890799 + MER51B LTR ERV1 1 377 0 4272 118 43 10 chrX 58083341 58084651 -118889489 + MER51B-int LTR ERV1 1 1437 -6379 677 165 92 61 chrX 58084651 58084815 -118889325 + MER4A LTR ERV1 366 534 -130 8719 112 45 1 chrX 58084815 58086277 -118887863 + MER51B-int LTR ERV1 1801 3327 -4489 1908 211 50 21 chrX 58086250 58086734 -118887406 + MER51B-int LTR ERV1 1474 1971 -3246 * 1988 144 125 3 chrX 58086721 58087097 -118887043 + MER51B-int LTR ERV1 2224 2645 -2572 365 163 109 11 chrX 58087096 58087188 -118886952 + MER51B-int LTR ERV1 5249 5349 -2188 * 9034 142 64 14 chrX 58087178 58089101 -118885039 + MER51B-int LTR ERV1 5620 7815 -1 972 140 58 6 chrX 58089103 58089274 -118884866 + MER51B LTR ERV1 1 180 -197 13291 187 15 12 chrX 58089276 58092718 -118881422 + L1PB1 LINE L1 3741 7195 -375 414 57 0 0 chrX 58092718 58092771 -118881369 + (TA)n Simple_repeat Simple_repeat 1 53 0 13291 187 15 12 chrX 58092771 58093147 -118880993 + L1PB1 LINE L1 7195 7569 -1 15239 166 18 6 chrX 58093153 58098473 -118875667 + L1MA2 LINE L1 2319 7700 -23 1581 232 41 22 chrX 58098506 58098873 -118875267 - MER74A LTR ERVL -67 491 118 540 305 18 0 chrX 58099059 58099223 -118874917 + HERVL68 LTR ERVL 2183 2349 -688 1360 206 16 23 chrX 58099251 58099557 -118874583 + HERVL68 LTR ERVL 2734 3037 0 1024 275 122 70 chrX 58099562 58100079 -118874061 + MER68 LTR ERV1 13 556 -6 1470 222 52 24 chrX 58100085 58100626 -118873514 - L1MDa LINE L1 -4021 2519 1964 180 0 0 0 chrX 58100689 58100709 -118873431 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 747 198 0 0 chrX 58103254 58103380 -118870760 - MER90 LTR ERV1 0 614 489 * 1253 219 39 64 chrX 58103379 58103740 -118870400 + MER68 LTR ERV1 16 367 -195 1024 211 32 49 chrX 58103824 58104071 -118870069 + MER68 LTR ERV1 320 562 0 471 289 13 78 chrX 58104082 58104714 -118869426 + MER68-int LTR ERV1 14 230 -3961 7287 185 84 25 chrX 58104131 58104173 -118869967 + HERVL68 LTR ERVL 13 51 -2986 2268 167 65 2 chrX 58104173 58104574 -118869566 + MSTB LTR MaLR 1 426 0 7287 185 84 25 chrX 58104574 58107344 -118866796 + HERVL68 LTR ERVL 51 3025 -12 2278 233 30 21 chrX 58107344 58107901 -118866239 + MER68 LTR ERV1 1 562 0 1537 202 74 9 chrX 58107979 58108316 -118865824 - MER90 LTR ERV1 -216 359 1 664 148 78 0 chrX 58108694 58108836 -118865304 - L1MA8 LINE L1 -6 6285 6133 3029 25 0 0 chrX 58109623 58109979 -118864161 - L1PA4 LINE L1 -2 6153 5798 2254 100 10 7 chrX 58109985 58110294 -118863846 - AluSx SINE Alu -2 310 1 2294 108 3 0 chrX 58110680 58110976 -118863164 - AluSx SINE Alu -15 297 1 1655 113 66 4 chrX 58111085 58111342 -118862798 - MER7A DNA MER2_type -75 271 1 299 93 0 0 chrX 58111342 58111375 -118862765 + MLT2B2 LTR ERVL 471 503 -12 1979 146 4 141 chrX 58111786 58112326 -118861814 - MER31B LTR ERV1 0 466 1 195 100 0 0 chrX 58112355 58112385 -118861755 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chrX 58112580 58112611 -118861529 + AT_rich Low_complexity Low_complexity 1 31 0 473 280 129 11 chrX 58112646 58112917 -118861223 + L1ME4a LINE L1 5819 6121 0 245 29 0 29 chrX 58113085 58113120 -118861020 + (CA)n Simple_repeat Simple_repeat 1 34 0 2007 107 13 44 chrX 58115352 58115669 -118858471 + AluY SINE Alu 1 307 -4 477 210 89 74 chrX 58117106 58117377 -118856763 - ORSL DNA AcHobo 0 275 1 219 275 15 30 chrX 58117651 58117782 -118856358 + GA-rich Low_complexity Low_complexity 5 133 0 289 206 0 15 chrX 58117986 58118054 -118856086 - MIR SINE MIR -3 259 193 418 216 31 56 chrX 58118745 58118907 -118855233 + HAL1b LINE L1 665 822 -526 931 209 70 110 chrX 58119264 58119638 -118854502 + L2 LINE L2 2941 3299 -14 189 121 0 0 chrX 58119640 58119673 -118854467 + (T)n Simple_repeat Simple_repeat 1 33 0 42171 41 22 2 chrX 58119701 58125730 -118848410 - L1PA4 LINE L1 -3 6152 1 3572 40 0 14 chrX 58125731 58126176 -118847964 - L1P1 LINE L1 -370 5785 5347 1192 78 0 0 chrX 58126182 58126348 -118847792 + L1P LINE L1 4233 4398 -1748 * 3942 218 90 12 chrX 58126345 58127568 -118846572 + L1ME1 LINE L1 3786 5103 -1043 2374 221 17 82 chrX 58127584 58128271 -118845869 + L1ME1 LINE L1 5254 5879 -287 267 31 0 0 chrX 58128271 58128303 -118845837 + (TG)n Simple_repeat Simple_repeat 1 32 0 2374 221 17 82 chrX 58128303 58128448 -118845692 + L1ME1 LINE L1 5879 6032 -134 6038 137 36 1 chrX 58128449 58129414 -118844726 + Tigger1 DNA MER2_type 1259 2257 -161 361 298 24 24 chrX 58129485 58129694 -118844446 + L1ME3A LINE L1 5684 5898 -264 863 246 54 83 chrX 58129705 58129748 -118844392 - MLT2D LTR ERVL -10 404 361 204 40 0 0 chrX 58129748 58129773 -118844367 + (GA)n Simple_repeat Simple_repeat 2 26 0 863 246 54 83 chrX 58129773 58130139 -118844001 - MLT2D LTR ERVL -53 361 7 21 0 0 0 chrX 58130371 58130392 -118843748 + AT_rich Low_complexity Low_complexity 1 21 0 9965 15 0 0 chrX 58130469 58132393 -118841747 - L1HS LINE L1 -4 6151 4228 6585 240 25 6 chrX 58132394 58132536 -118841604 + L1PA15 LINE L1 2146 2284 -3862 336 64 0 0 chrX 58132536 58132583 -118841557 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 6585 240 25 6 chrX 58132583 58134170 -118839970 + L1PA15 LINE L1 2284 3908 -2238 2435 93 3 12 chrX 58134170 58134502 -118839638 - THE1C LTR MaLR -46 329 1 9793 121 11 40 chrX 58134518 58136047 -118838093 - THE1C-int LTR MaLR -96 1484 1 2500 124 3 11 chrX 58136047 58136425 -118837715 - THE1C LTR MaLR 0 375 1 5264 176 63 33 chrX 58136425 58138567 -118835573 + L1PA15 LINE L1 3908 6164 -1 252 213 0 0 chrX 58138601 58138662 -118835478 - L1MA8 LINE L1 -65 6226 6166 1378 135 82 65 chrX 58138669 58138860 -118835280 - L1MA5 LINE L1 0 6300 6099 2280 83 0 10 chrX 58138860 58139148 -118834992 - AluY SINE Alu -26 285 1 1378 135 82 65 chrX 58139148 58139296 -118834844 - L1MA5 LINE L1 -201 6099 5955 4895 155 14 22 chrX 58139296 58140328 -118833812 - L1MA8 LINE L1 -116 6175 5152 238 343 0 43 chrX 58141029 58141099 -118833041 + L3b LINE CR1 1509 1575 -8 211 263 253 42 chrX 58142668 58142763 -118831377 + MIR3 SINE MIR 42 156 -52 206 214 0 0 chrX 58143088 58143130 -118831010 + L3b LINE CR1 1229 1270 -313 201 348 24 27 chrX 58143252 58143346 -118830794 + MER5A DNA MER1_type 2 113 -76 310 164 0 0 chrX 58143490 58143545 -118830595 + MER53 DNA DNA 135 189 0 1403 247 73 82 chrX 58144006 58144914 -118829226 - L1M4 LINE L1 -797 5349 4450 1033 279 41 74 chrX 58144979 58145632 -118828508 - L1ME1 LINE L1 -7 6159 5530 4895 155 21 32 chrX 58145678 58146650 -118827490 - L1MA5 LINE L1 -2 6298 5338 3874 196 22 0 chrX 58147176 58147994 -118826146 - L1MA5 LINE L1 -788 5358 4523 3676 204 37 5 chrX 58147999 58148855 -118825285 - L1MA7 LINE L1 0 6291 5408 1447 165 4 11 chrX 58148855 58149120 -118825020 + L1PA15 LINE L1 5898 6162 -3 292 228 0 4 chrX 58149152 58149229 -118824911 - L1ME3 LINE L1 -47 6115 6050 9434 160 43 8 chrX 58149377 58150591 -118823549 + L1PBa LINE L1 904 2074 -4788 2321 95 0 0 chrX 58150591 58150886 -118823254 + AluY SINE Alu 1 295 -16 9434 160 43 8 chrX 58150886 58152514 -118821626 + L1PBa LINE L1 2074 4013 -2849 2593 149 38 0 chrX 58152518 58152942 -118821198 - L1P3 LINE L1 -5146 1315 876 15435 165 16 28 chrX 58152955 58155223 -118818917 + L1PB1 LINE L1 1145 3439 -2712 6706 71 4 4 chrX 58155223 58156371 -118817769 + L1PA6 LINE L1 5005 6152 -2 15435 165 16 28 chrX 58156371 58159192 -118814948 + L1PB1 LINE L1 3439 6150 -1 823 171 8 7 chrX 58159201 58159367 -118814773 + L1PA16 LINE L1 5750 5880 -271 3535 111 4 10 chrX 58159367 58159881 -118814259 + MER9 LTR ERVK 1 511 0 823 171 8 7 chrX 58159881 58159917 -118814223 + L1PA16 LINE L1 5880 5914 -237 25264 66 19 9 chrX 58159917 58160644 -118813496 + HERVK9 LTR ERVK 38 757 -5159 215 217 0 83 chrX 58160644 58160704 -118813436 + MER5B DNA MER1_type 55 109 -69 25264 66 19 9 chrX 58160704 58165673 -118808467 + HERVK9 LTR ERVK 757 5916 0 3505 121 2 4 chrX 58165673 58166185 -118807955 + MER9 LTR ERVK 1 511 0 450 213 0 0 chrX 58166186 58166280 -118807860 + L1PA16 LINE L1 5910 6003 -163 1377 131 30 5 chrX 58166285 58166484 -118807656 + AluSg/x SINE Alu 89 292 -20 1543 151 30 4 chrX 58166496 58166761 -118807379 + L1PA13 LINE L1 5889 6160 -3 2932 143 6 18 chrX 58166761 58167264 -118806876 + L1PA13 LINE L1 5606 6102 -61 12564 65 0 1 chrX 58167269 58169144 -118804996 - L1P2 LINE L1 -560 5594 3721 5325 165 6 30 chrX 58169142 58169900 -118804240 + L1PB1 LINE L1 4573 5347 -804 * 1608 147 4 0 chrX 58169900 58170132 -118804008 + AluSp SINE Alu 63 295 -18 5325 165 6 30 chrX 58170132 58170837 -118803303 + L1PB1 LINE L1 5347 6005 -146 2329 95 0 3 chrX 58170837 58171142 -118802998 + AluSq SINE Alu 1 304 -9 5325 165 6 30 chrX 58171142 58171285 -118802855 + L1PB1 LINE L1 6005 6150 -1 6458 206 57 37 chrX 58171362 58173124 -118801016 - L1 LINE L1 -866 6699 4885 216 0 0 0 chrX 58173124 58173148 -118800992 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6458 206 57 37 chrX 58173148 58173498 -118800642 - L1 LINE L1 -2680 4885 4544 5471 103 4 9 chrX 58173483 58174981 -118799159 - L1PA8 LINE L1 -2 6485 5039 * 16169 155 10 22 chrX 58174975 58178404 -118795736 - L1PA8 LINE L1 -2395 4066 649 896 288 54 0 chrX 58178405 58178819 -118795321 - L1 LINE L1 -3574 3991 3555 39012 59 10 1 chrX 58178837 58184870 -118789270 + L1PA4 LINE L1 64 6149 -6 356 275 21 11 chrX 58184868 58185057 -118789083 - L1 LINE L1 -4014 3551 3361 * 1368 114 0 0 chrX 58185057 58185233 -118788907 - AluSg SINE Alu -130 180 5 6015 106 12 3 chrX 58185248 58186662 -118787478 - L1PA13 LINE L1 -6 6808 5386 420 116 0 0 chrX 58186662 58186731 -118787409 - Alu SINE Alu -1 310 242 8254 179 16 14 chrX 58186733 58188546 -118785594 - L1PA13 LINE L1 -1399 5398 3583 2304 130 14 6 chrX 58188548 58188902 -118785238 - THE1B LTR MaLR -2 362 6 6471 231 35 21 chrX 58188905 58189692 -118784448 - L1PA13 LINE L1 -3213 3584 2809 1907 179 0 0 chrX 58189692 58189988 -118784152 - AluSx SINE Alu -11 301 6 6471 231 35 21 chrX 58189988 58191107 -118783033 - L1PA13 LINE L1 -3988 2809 1653 4794 140 45 52 chrX 58191157 58191756 -118782384 - L1PB1 LINE L1 -1 6150 5548 2122 116 10 13 chrX 58191756 58192059 -118782081 - AluSg1 SINE Alu -7 302 1 4794 140 45 52 chrX 58192059 58192226 -118781914 - L1PB1 LINE L1 -603 5548 5381 669 86 0 0 chrX 58192226 58192319 -118781821 + (TA)n Simple_repeat Simple_repeat 1 93 0 4794 140 45 52 chrX 58192319 58192330 -118781810 - L1PB1 LINE L1 -770 5381 5371 7842 16 0 0 chrX 58192330 58193485 -118780655 - L1PA2 LINE L1 -1 6154 5000 4794 140 45 52 chrX 58193485 58193928 -118780212 - L1PB1 LINE L1 -780 5371 4924 2180 189 2 11 chrX 58193933 58194408 -118779732 + L1PB1 LINE L1 4427 4897 -1249 1153 103 0 0 chrX 58194420 58194594 -118779546 + L1PB1 LINE L1 5737 5910 -241 1631 237 3 17 chrX 58194612 58194962 -118779178 - L1PA13 LINE L1 -5174 1613 1269 793 305 80 19 chrX 58195002 58195327 -118778813 - L1PA13 LINE L1 -5611 1176 832 3445 228 38 3 chrX 58195356 58196067 -118778073 - L1PA13 LINE L1 -6051 736 1 4328 147 53 7 chrX 58196160 58196997 -118777143 - L1PB2 LINE L1 -4 6147 5273 39960 59 2 1 chrX 58197003 58203128 -118771012 - L1PA4 LINE L1 -5 6150 13 581 59 0 24 chrX 58203138 58203223 -118770917 - L1PA5 LINE L1 -2 6152 6070 1695 225 23 21 chrX 58203224 58203743 -118770397 - L1P LINE L1 -831 5315 4796 498 297 32 23 chrX 58203761 58203882 -118770258 - L1MDa LINE L1 -2692 3848 3730 1832 135 74 40 chrX 58203882 58204208 -118769932 + MER1B DNA MER1_type 1 337 0 498 297 32 23 chrX 58204208 58204517 -118769623 - L1MDa LINE L1 -2810 3730 3414 337 228 23 33 chrX 58204544 58204682 -118769458 + L1MEc LINE L1 2314 2424 -3791 * 1297 262 58 23 chrX 58204675 58205449 -118768691 - L1MDa LINE L1 -3131 3409 2609 351 319 66 120 chrX 58205971 58206689 -118767451 - L1MDa LINE L1 -5592 948 429 438 265 85 45 chrX 58206702 58206902 -118767238 - L1MDa LINE L1 -6257 283 76 190 253 333 0 chrX 58207078 58207165 -118766975 - L2 LINE L2 -23 3290 3175 252 203 0 54 chrX 58208057 58208131 -118766009 - MER65-int LTR ERV1 -2503 2368 2299 12172 210 34 23 chrX 58209877 58211921 -118762219 - L1PB3 LINE L1 -7 6204 4185 608 59 12 0 chrX 58211921 58212006 -118762134 + (TTTTC)n Simple_repeat Simple_repeat 4 89 0 12172 210 34 23 chrX 58212006 58216062 -118758078 - L1PB3 LINE L1 -2026 4185 31 3706 278 29 14 chrX 58216054 58218173 -118755967 - L1PBa LINE L1 -5224 1639 3 * 445 322 127 18 chrX 58218197 58219263 -118754877 - L1M4 LINE L1 -1823 4323 3142 3205 97 21 0 chrX 58219264 58219729 -118754411 - L1PA13 LINE L1 -5 6158 5684 714 149 18 0 chrX 58219730 58219844 -118754296 + LTR10D-int LTR ERV1 2180 2295 -3651 2265 163 20 8 chrX 58219844 58220243 -118753897 + LTR10D-int LTR ERV1 3012 3415 -4122 33233 196 11 16 chrX 58220418 58227011 -118747129 + LTR10D-int LTR ERV1 1197 7759 -26 3647 72 9 34 chrX 58227026 58227552 -118746588 + LTR10D LTR ERV1 1 513 0 16804 103 23 26 chrX 58227552 58230213 -118743927 + MER61A-int LTR ERV1 2566 5217 0 1605 173 64 21 chrX 58230213 58230542 -118743598 + MER61A LTR ERV1 1 343 0 1193 152 10 0 chrX 58230542 58230739 -118743401 - MER57A LTR ERV1 -200 203 5 1313 261 35 116 chrX 58230863 58231082 -118743058 + L1M4 LINE L1 307 542 -6000 5479 126 28 3 chrX 58231082 58231933 -118742207 + MER4D LTR ERV1 1 872 0 1313 261 35 116 chrX 58231933 58232857 -118741283 + L1M4 LINE L1 542 1357 -5185 895 349 37 20 chrX 58232859 58233501 -118740639 + L1PA15-16 LINE L1 1 626 -6223 17281 194 27 9 chrX 58233688 58235193 -118738947 - L1MA2 LINE L1 -22 7701 6224 1762 126 63 111 chrX 58235193 58235573 -118738567 - THE1B LTR MaLR -2 362 1 11207 105 10 8 chrX 58235574 58237150 -118736990 - THE1B-int LTR MaLR -1 1579 1 2294 126 31 14 chrX 58237150 58237508 -118736632 - THE1B LTR MaLR 0 364 1 17281 194 27 9 chrX 58237508 58243532 -118730608 - L1MA2 LINE L1 -1498 6225 16 3931 218 22 21 chrX 58243533 58244993 -118729147 + L1MB1 LINE L1 4211 5674 -494 2078 132 0 3 chrX 58247182 58247477 -118726663 + AluSg SINE Alu 1 294 -16 1361 56 6 0 chrX 58247498 58247677 -118726463 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 4943 160 20 25 chrX 58247689 58248607 -118725533 - MER49 LTR ERV1 -10 913 1 31884 99 51 8 chrX 58248773 58254661 -118719479 - L1PA6 LINE L1 -1 6153 10 1067 188 54 0 chrX 58255057 58255281 -118718859 + L1MB1 LINE L1 5652 5887 -302 1100 237 25 28 chrX 58255285 58255643 -118718497 + L1ME1 LINE L1 4479 4835 -1311 1255 251 51 53 chrX 58255671 58256202 -118717938 - LTR55 LTR ERV -18 530 1 544 258 6 12 chrX 58256202 58256365 -118717775 + L1ME1 LINE L1 4847 5008 -1138 1206 164 5 24 chrX 58256376 58256583 -118717557 - AluJo SINE Alu -23 289 87 849 227 77 6 chrX 58256583 58257245 -118716895 + L1ME1 LINE L1 5007 5909 -257 * 3920 45 8 0 chrX 58257241 58257731 -118716409 - L1P LINE L1 -1506 4640 4147 3459 94 2 6 chrX 58257717 58258217 -118715923 - L1P LINE L1 -3223 2923 2426 * 209 125 125 0 chrX 58258446 58258486 -118715654 - L2 LINE L2 -14 3258 3214 238 329 59 12 chrX 58259454 58259539 -118714601 - MIR SINE MIR -62 146 58 2179 63 0 0 chrX 58261496 58261780 -118712360 - L1P LINE L1 -3706 2440 2157 6554 75 18 0 chrX 58261780 58263277 -118710863 + L1PA6 LINE L1 4641 6150 -4 410 260 83 31 chrX 58263316 58263508 -118710632 + L1MB8 LINE L1 5894 6095 -83 3988 198 73 20 chrX 58263512 58264514 -118709626 - L1MDb LINE L1 -2979 4586 3532 2321 258 30 31 chrX 58264517 58265161 -118708979 - L1 LINE L1 -6907 658 16 840 217 124 9 chrX 58265261 58265487 -118708653 - L1ME LINE L1 -448 5714 5463 1581 191 10 23 chrX 58265699 58265998 -118708142 - AluJb SINE Alu -17 295 1 6579 146 26 11 chrX 58266021 58268166 -118705974 - L1MA4 LINE L1 -9 6291 4109 1557 167 10 3 chrX 58268193 58268498 -118705642 - L1MB3 LINE L1 -4 6179 5873 249 33 0 0 chrX 58270648 58270678 -118703462 + (GGA)n Simple_repeat Simple_repeat 1 30 0 376 206 59 59 chrX 58272216 58272386 -118701754 - L1ME4a LINE L1 -5 6116 5947 1606 224 141 16 chrX 58273593 58274103 -118700037 - MER90 LTR ERV1 0 575 2 668 242 113 16 chrX 58274478 58274672 -118699468 + MIR SINE MIR 39 251 -11 743 163 8 0 chrX 58274765 58274888 -118699252 - AluJb SINE Alu -30 282 159 2161 103 0 4 chrX 58275306 58275587 -118698553 - AluSq SINE Alu -33 280 1 480 105 0 0 chrX 58275595 58275671 -118698469 + (CA)n Simple_repeat Simple_repeat 1 76 0 324 264 184 0 chrX 58276180 58276305 -118697835 - MIR SINE MIR -113 149 2 2281 106 0 0 chrX 58276381 58276683 -118697457 + AluSp SINE Alu 1 302 -11 330 256 0 12 chrX 58276988 58277070 -118697070 + MIR SINE MIR 82 162 -100 263 140 20 0 chrX 58277070 58277120 -118697020 + (TA)n Simple_repeat Simple_repeat 2 52 0 248 298 0 11 chrX 58277122 58277216 -118696924 + MIR SINE MIR 166 258 -4 2320 204 32 4 chrX 58277455 58278096 -118696044 - L1MDb LINE L1 -4917 2648 1997 * 2734 208 91 14 chrX 58278089 58278650 -118695490 - L1MC3 LINE L1 -314 7471 6845 213 108 0 0 chrX 58278650 58278687 -118695453 + (TG)n Simple_repeat Simple_repeat 2 38 0 2734 208 91 14 chrX 58278687 58278821 -118695319 - L1MC3 LINE L1 -940 6845 6723 26 30 0 0 chrX 58278843 58278876 -118695264 + AT_rich Low_complexity Low_complexity 1 33 0 2212 221 26 11 chrX 58278876 58279458 -118694682 - L1MB3 LINE L1 -367 5816 5225 13512 144 32 28 chrX 58279462 58280374 -118693766 - Tigger1 DNA MER2_type -4 2414 1508 2022 150 17 14 chrX 58280374 58280728 -118693412 + THE1A LTR MaLR 1 355 0 11157 112 6 2 chrX 58280728 58282303 -118691837 + THE1A-int LTR MaLR 1 1580 0 1797 161 59 34 chrX 58282303 58282658 -118691482 + THE1B LTR MaLR 1 364 0 13512 144 32 28 chrX 58282658 58284142 -118689998 - Tigger1 DNA MER2_type -909 1509 5 1767 181 92 88 chrX 58284168 58284688 -118689452 - MER4B-int LTR ERV1 -298 6460 5939 4399 195 23 73 chrX 58284730 58285720 -118688420 - L1M1 LINE L1 -6164 1401 461 606 183 0 0 chrX 58285876 58285980 -118688160 + U6 snRNA snRNA 1 104 -3 2447 238 18 5 chrX 58285998 58286736 -118687404 + L1PA13 LINE L1 1667 2579 -4218 697 191 28 0 chrX 58286736 58286877 -118687263 + L1PA16 LINE L1 6014 6158 -8 309 169 17 0 chrX 58286914 58286973 -118687167 - L1MEc LINE L1 -4326 2070 2011 1258 316 31 27 chrX 58287056 58287933 -118686207 - ERVL LTR ERVL -4752 1012 2 425 143 31 31 chrX 58288042 58288140 -118686000 - L1PB2 LINE L1 -10 6141 6044 4780 76 2 0 chrX 58288202 58288820 -118685320 - L1PA7 LINE L1 -10 6144 5526 * 6420 84 16 3 chrX 58288815 58290491 -118683649 + L1PA7 LINE L1 4465 6153 -1 3854 202 54 18 chrX 58290495 58290655 -118683485 - L1PA13 LINE L1 -4313 2484 2331 1802 150 25 0 chrX 58290655 58290953 -118683187 - AluSx SINE Alu 0 305 1 3854 202 54 18 chrX 58290953 58291830 -118682310 - L1PA13 LINE L1 -4466 2331 1413 9916 105 11 0 chrX 58341845 58344084 -118630056 + L1PA7 LINE L1 3901 6154 0 15055 123 7 49 chrX 58344084 58346775 -118627365 + L1P LINE L1 1644 4221 -1925 7429 113 14 1 chrX 58346875 58347948 -118626192 + HERVL-A2 LTR ERVL 4568 5654 0 1808 189 70 25 chrX 58347948 58348482 -118625658 + MLT2A2 LTR ERVL 1 554 0 4044 217 5 25 chrX 58348482 58349482 -118624658 + L1 LINE L1 3966 4945 -1201 291 162 46 74 chrX 58349655 58349749 -118624391 - L1MB4 LINE L1 -20 6154 6059 * 1489 240 104 18 chrX 58349747 58350364 -118623776 - L1 LINE L1 -2175 3971 3302 1384 250 69 25 chrX 58350411 58350979 -118623161 + L1M4 LINE L1 4490 5082 -1064 307 192 68 0 chrX 58351024 58351097 -118623043 - MER53 DNA DNA -1 188 111 225 229 71 0 chrX 58351035 58351105 -118623035 + MER53 DNA DNA 23 97 -92 * 621 270 25 15 chrX 58351142 58351346 -118622794 + L1ME1 LINE L1 5952 6157 -9 21 71 0 0 chrX 58351351 58351393 -118622747 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chrX 58352707 58352736 -118621404 + AT_rich Low_complexity Low_complexity 1 29 0 328 259 67 7 chrX 58352743 58352894 -118621246 + L1MCa LINE L1 1551 2148 -4279 5352 154 1 1 chrX 58352894 58354244 -118619896 + L1PA16 LINE L1 4812 6166 0 1080 267 119 32 chrX 58354254 58355209 -118618931 + L1M4 LINE L1 1183 2374 -4451 180 0 0 0 chrX 58355238 58355258 -118618882 + (A)n Simple_repeat Simple_repeat 1 20 0 1609 276 49 10 chrX 58355346 58356295 -118617845 + L1M4 LINE L1 2262 3210 -3434 11958 118 8 7 chrX 58356416 58358466 -118615674 + MER61-int LTR ERV1 3049 5146 -71 8906 99 10 8 chrX 58358605 58360024 -118614116 + L1P LINE L1 4012 5428 -726 10903 43 1 6 chrX 58360024 58361479 -118612661 - L1P LINE L1 -2479 3667 2220 * 13092 24 0 0 chrX 58361478 58363092 -118611048 + L1P LINE L1 3696 5309 -837 238 351 0 99 chrX 58363243 58363394 -118610746 - L3 LINE CR1 -4 1573 1438 1432 217 57 40 chrX 58363417 58363822 -118610318 + MER92A LTR ERV1 1 412 0 25 31 0 0 chrX 58364627 58364659 -118609481 + AT_rich Low_complexity Low_complexity 1 32 0 398 269 28 14 chrX 58364853 58364998 -118609142 + L1MD3 LINE L1 7830 7976 -19 18498 29 6 0 chrX 58365639 58368700 -118605440 + L1PA2 LINE L1 3014 6092 -63 434 253 185 7 chrX 58370365 58370511 -118603629 - MIR SINE MIR 0 262 91 24 0 0 0 chrX 58371749 58371773 -118602367 + AT_rich Low_complexity Low_complexity 1 24 0 784 261 84 4 chrX 58371806 58372067 -118602073 + MER102a DNA MER1_type 49 330 0 322 191 55 64 chrX 58372123 58372233 -118601907 + MIR SINE MIR 80 188 -74 23 33 0 0 chrX 58372262 58372292 -118601848 + AT_rich Low_complexity Low_complexity 1 30 0 376 242 81 11 chrX 58372368 58372460 -118601680 - MIR3 SINE MIR -46 162 63 1047 213 14 0 chrX 58372618 58372829 -118601311 - MER58A DNA MER1_type 0 224 11 870 233 32 15 chrX 58373860 58374157 -118599983 - L1MB7 LINE L1 -2 6182 5862 743 184 32 16 chrX 58374157 58374347 -118599793 - L1MB4 LINE L1 -3 6177 5985 1136 238 104 41 chrX 58374349 58374934 -118599206 - L1M4c LINE L1 -2515 3946 3325 441 167 0 0 chrX 58374962 58375034 -118599106 - MLT1B LTR MaLR -318 72 1 11897 145 14 39 chrX 58375035 58378039 -118596101 - L1M4c LINE L1 -4014 2449 2 2807 243 36 23 chrX 58378050 58378958 -118595182 - L1 LINE L1 -1045 5101 4177 2183 113 0 10 chrX 58378958 58379260 -118594880 + AluSx SINE Alu 1 299 -13 2807 243 36 23 chrX 58379260 58379351 -118594789 - L1 LINE L1 -1969 4177 4089 1545 194 34 47 chrX 58379468 58379912 -118594228 - L1M4c LINE L1 -4584 1800 1363 404 272 9 0 chrX 58379910 58380063 -118594077 - L1MCa LINE L1 -4588 1794 1640 * 4883 146 58 16 chrX 58380075 58381047 -118593093 - L1MC2 LINE L1 -9 6335 5324 2066 191 129 15 chrX 58381167 58381826 -118592314 - L1MC2 LINE L1 -814 5332 4599 * 5072 234 20 11 chrX 58381818 58383861 -118590279 - L1PA13 LINE L1 -1837 4960 1600 1557 147 4 0 chrX 58383920 58384198 -118589942 - AluSx SINE Alu 0 328 50 2320 221 18 4 chrX 58384407 58384950 -118589190 - L1MB4 LINE L1 -51 6129 5579 5522 82 9 1 chrX 58384958 58385756 -118588384 - L1PA7 LINE L1 -6 6148 5345 5529 206 50 11 chrX 58386582 58387778 -118586362 + MST-int LTR MaLR 357 1599 -52 1948 88 16 29 chrX 58387778 58388019 -118586121 + LTR7 LTR ERV1 1 280 -170 2201 101 3 32 chrX 58388019 58388335 -118585805 - AluSg SINE Alu -3 307 1 1948 88 16 29 chrX 58388335 58388496 -118585644 + LTR7 LTR ERV1 280 442 -8 4510 127 22 45 chrX 58388504 58389978 -118584162 + HERVH LTR ERV1 1 1554 -6159 645 244 137 9 chrX 58390115 58390451 -118583689 + L1MB7 LINE L1 3329 3707 -2439 990 251 34 6 chrX 58390490 58390813 -118583327 + L1MB7 LINE L1 4538 4869 -1277 1237 262 44 83 chrX 58390815 58391452 -118582688 - LTR9 LTR ERV1 0 612 1 1525 208 46 26 chrX 58391456 58391622 -118582518 + L1MB7 LINE L1 4872 5033 -1113 2287 73 0 14 chrX 58391622 58391932 -118582208 + AluY SINE Alu 1 306 0 1525 208 46 26 chrX 58391932 58392217 -118581923 + L1MB7 LINE L1 5033 5333 -813 905 222 37 8 chrX 58392212 58392455 -118581685 + L1MD2 LINE L1 5679 5928 -431 * 1487 175 20 42 chrX 58392458 58392813 -118581327 + L1MD2 LINE L1 6010 6356 -3 3117 189 52 8 chrX 58392815 58393552 -118580588 + L1MB7 LINE L1 5324 6092 -92 6835 123 0 16 chrX 58393665 58394794 -118579346 + HERVH LTR ERV1 1877 2987 -4726 920 121 0 0 chrX 58394788 58394937 -118579203 + HERVH LTR ERV1 3140 3288 -4425 * 3132 116 0 4 chrX 58394943 58395433 -118578707 + HERVH LTR ERV1 3505 3992 -3721 1886 149 1 4 chrX 58395465 58395793 -118578347 + HERVH LTR ERV1 3955 4288 -2749 4754 117 2 2 chrX 58395793 58396673 -118577467 + HERVH LTR ERV1 4221 5149 -2564 1265 139 23 0 chrX 58396674 58396889 -118577251 + HERVH LTR ERV1 5600 5819 -1894 2293 82 50 13 chrX 58396889 58397265 -118576875 + HERVH LTR ERV1 7324 7713 0 1614 82 11 19 chrX 58397375 58397644 -118576496 + HERVH LTR ERV1 7447 7713 0 2508 103 128 5 chrX 58397644 58398043 -118576097 + LTR7 LTR ERV1 1 448 -2 295 135 39 0 chrX 58398048 58398100 -118576040 + MSTB-int LTR MaLR 1598 1651 0 2256 174 16 12 chrX 58398100 58398347 -118575793 + MSTB LTR MaLR 1 252 -174 2376 146 33 24 chrX 58398347 58398771 -118575369 + MSTA LTR MaLR 1 428 0 2256 174 16 12 chrX 58398771 58398947 -118575193 + MSTB LTR MaLR 252 426 0 234 228 0 38 chrX 58399001 58399080 -118575060 + L1ME LINE L1 5708 5783 -381 465 296 84 49 chrX 58400394 58400681 -118573459 + L1MCa LINE L1 1185 1613 -4813 692 260 74 7 chrX 58401222 58401507 -118572633 + L1MCc LINE L1 1153 1456 -4967 1998 318 52 18 chrX 58401514 58402496 -118571644 + L1M3a LINE L1 12 1026 -4929 * 3053 154 51 5 chrX 58402480 58402636 -118571504 + L1MA9 LINE L1 5330 5477 -835 2005 149 17 0 chrX 58402636 58402931 -118571209 + AluSx SINE Alu 1 300 -12 3053 154 51 5 chrX 58402931 58403213 -118570927 + L1MA9 LINE L1 5477 5804 -508 308 24 24 0 chrX 58403213 58403254 -118570886 + (CA)n Simple_repeat Simple_repeat 2 43 0 3053 154 51 5 chrX 58403254 58403399 -118570741 + L1MA9 LINE L1 5804 5941 -371 1298 211 8 4 chrX 58403407 58403658 -118570482 + AluJo SINE Alu 1 252 -60 24 0 0 0 chrX 58403667 58403691 -118570449 + AT_rich Low_complexity Low_complexity 1 24 0 771 224 4 61 chrX 58403692 58403938 -118570202 + L1MA9 LINE L1 5936 6167 -145 898 263 55 13 chrX 58404086 58404614 -118569526 + L1MCc LINE L1 1456 2005 -4936 251 263 88 0 chrX 58404764 58404878 -118569262 + L1MCc LINE L1 1970 2093 -4848 9715 153 24 18 chrX 58404887 58406839 -118567301 + L1P3 LINE L1 10 1973 -4488 2931 103 4 51 chrX 58406860 58407372 -118566768 + L1P3 LINE L1 2446 2933 -3528 873 147 50 50 chrX 58407507 58407745 -118566395 + L1MD2 LINE L1 6119 6356 -3 3170 188 60 8 chrX 58407747 58408512 -118565628 + L1MB7 LINE L1 5324 6128 -56 2116 8 0 8 chrX 58409500 58409737 -118564403 - AluYb8 SINE Alu -12 306 72 256 279 70 23 chrX 58409974 58410060 -118564080 + MIR SINE MIR 4 93 -115 365 289 74 7 chrX 58410224 58410359 -118563781 + MIR SINE MIR 90 233 -29 789 251 38 29 chrX 58410525 58410764 -118563376 + MIR SINE MIR 2 242 -20 267 31 0 0 chrX 58411438 58411470 -118562670 + (TCG)n Simple_repeat Simple_repeat 1 32 0 501 84 0 0 chrX 58411491 58411562 -118562578 + (GGA)n Simple_repeat Simple_repeat 2 72 0 641 269 23 23 chrX 58412210 58412385 -118561755 + MIR3 SINE MIR 16 190 -18 189 336 154 58 chrX 58413019 58413537 -118560603 + L2 LINE L2 2298 2865 -449 340 324 74 40 chrX 58413627 58413803 -118560337 + L2 LINE L2 3079 3260 -12 309 332 63 61 chrX 58416117 58416717 -118557423 - L2 LINE L2 -739 2575 1886 2227 118 26 6 chrX 58417716 58418065 -118556075 - L1PA16 LINE L1 0 6166 5811 978 140 0 0 chrX 58418165 58418315 -118555825 - L1P3 LINE L1 -6302 159 10 11339 201 38 30 chrX 58418327 58418812 -118555328 - L1 LINE L1 -2452 4396 3916 7572 31 0 0 chrX 58418812 58420042 -118554098 - L1PA4 LINE L1 0 6155 4925 11339 201 38 30 chrX 58420042 58421027 -118553113 - L1 LINE L1 -2932 3916 2940 2143 183 33 9 chrX 58421027 58421447 -118552693 + MSTB1 LTR MaLR 3 432 0 11339 201 38 30 chrX 58421447 58424167 -118549973 - L1 LINE L1 -3908 2940 177 7917 104 18 2 chrX 58424116 58425273 -118548867 - THE1B-int LTR MaLR -404 1176 1 * 1871 145 57 23 chrX 58425273 58425625 -118548515 - THE1B LTR MaLR 0 364 1 2246 169 32 12 chrX 58425625 58427119 -118547021 - L1PBa LINE L1 -5144 1719 1 1700 143 51 19 chrX 58427112 58427484 -118546656 - L1M1 LINE L1 -3937 3628 3245 * 16825 104 9 0 chrX 58427488 58430789 -118543351 - L1PA7 LINE L1 0 6154 2832 3564 236 11 3 chrX 58430920 58431918 -118542222 - L1P LINE L1 -2025 4121 3116 248 301 84 84 chrX 58432167 58432319 -118541821 + MIR SINE MIR 53 207 -55 6239 117 99 23 chrX 58432319 58432652 -118541488 - Tigger3b DNA MER2_type -1798 1230 924 224 59 29 0 chrX 58432652 58432686 -118541454 + (TGAG)n Simple_repeat Simple_repeat 4 38 0 6239 117 99 23 chrX 58432686 58433494 -118540646 - Tigger3b DNA MER2_type -2104 924 2 248 301 84 84 chrX 58433494 58433544 -118540596 + MIR SINE MIR 206 255 -7 13872 143 18 7 chrX 58434078 58436670 -118537470 - L1P LINE L1 -2454 3692 1072 1002 164 45 5 chrX 58437704 58437924 -118536216 + L1MA9 LINE L1 6051 6279 -33 229 260 204 17 chrX 58438300 58438535 -118535605 + L1MC4a LINE L1 5864 6142 -1666 567 288 137 0 chrX 58438853 58439072 -118535068 + MIR SINE MIR 8 256 -6 26841 48 8 0 chrX 58441422 58445680 -118528460 - L1PA6 LINE L1 -49 6105 1819 32194 55 10 9 chrX 58445781 58450955 -118523185 + L1PA3 LINE L1 841 6017 -138 495 260 0 0 chrX 58451120 58451243 -118522897 + L1M3 LINE L1 5463 5585 -598 * 5890 108 1 1 chrX 58451235 58452153 -118521987 - L1PA7 LINE L1 -968 5178 4261 5641 81 7 1 chrX 58452156 58453030 -118521110 + L1PA7 LINE L1 5181 6058 -96 9847 136 12 1 chrX 58453222 58455672 -118518468 - L1PA8 LINE L1 -3 6169 3697 715 34 0 0 chrX 58455801 58455889 -118518251 - L1P LINE L1 -3838 2308 2221 14306 24 6 1 chrX 58455889 58458345 -118515795 + L1PA4 LINE L1 3696 6155 0 7479 125 52 31 chrX 58458448 58459929 -118514211 - MER41B-int LTR ERV1 -4288 3528 1 951 97 58 0 chrX 58459929 58460084 -118514056 - MER41B LTR ERV1 0 635 472 13291 182 31 11 chrX 58460084 58462777 -118511363 - L1M1 LINE L1 -4798 2767 22 10353 232 87 31 chrX 58462784 58465248 -118508892 - L1M2 LINE L1 -707 5669 3347 2052 122 17 20 chrX 58465248 58465544 -118508596 + AluSx SINE Alu 1 295 -17 10353 232 87 31 chrX 58465544 58466664 -118507476 - L1M2 LINE L1 -3029 3347 2292 2514 69 3 0 chrX 58466664 58466970 -118507170 - AluY SINE Alu -4 307 1 10353 232 87 31 chrX 58466970 58469004 -118505136 - L1M2 LINE L1 -4084 2292 1 1945 242 57 7 chrX 58469004 58469710 -118504430 - L1M4c LINE L1 -2210 4434 3694 * 3306 229 71 29 chrX 58469709 58470189 -118503951 - L1M4c LINE L1 -3420 3224 2766 787 258 6 0 chrX 58470189 58470352 -118503788 - FAM SINE Alu -11 164 1 3306 229 71 29 chrX 58470352 58471936 -118502204 - L1M4c LINE L1 -3878 2766 1039 309 272 35 9 chrX 58471952 58472066 -118502074 - L1M4c LINE L1 -5728 918 611 5107 137 30 5 chrX 58472442 58473616 -118500524 - L1PA15 LINE L1 -19 6146 4953 5881 207 127 8 chrX 58473618 58475312 -118498828 - L1PA15 LINE L1 -1679 4467 2572 511 167 0 35 chrX 58475309 58475423 -118498717 - L1MA7 LINE L1 -249 6042 5933 * 7525 34 0 1 chrX 58475423 58476909 -118497231 - L1PA3 LINE L1 -3 6152 4669 15257 51 2 11 chrX 58476910 58478940 -118495200 - L1PA3 LINE L1 -4135 2011 1 1639 244 42 63 chrX 58478934 58479667 -118494473 - L1M2 LINE L1 -5043 1806 1089 * 240 258 65 0 chrX 58479878 58479940 -118494200 - L2 LINE L2 -1 3271 3206 234 137 59 0 chrX 58480211 58480262 -118493878 - L1P LINE L1 -1140 5006 4953 * 19207 119 169 30 chrX 58480258 58482069 -118492071 - L1P LINE L1 -1673 4473 2915 7525 34 0 1 chrX 58482069 58483555 -118490585 - L1PA3 LINE L1 -3 6152 4669 19207 119 169 30 chrX 58483555 58485665 -118488475 - L1P LINE L1 -3231 2915 7 4637 164 73 12 chrX 58485671 58487365 -118486775 - L1MA7 LINE L1 -340 5951 4156 1281 200 54 3 chrX 58487362 58487657 -118486483 - L1 LINE L1 -992 5154 4845 * 24224 132 16 18 chrX 58487657 58488804 -118485336 + L1PA8A LINE L1 227 1375 -5071 189 0 0 0 chrX 58488804 58488825 -118485315 + (CAA)n Simple_repeat Simple_repeat 1 21 0 24224 132 16 18 chrX 58488825 58493911 -118480229 + L1PA8A LINE L1 1375 6445 -1 6295 189 39 9 chrX 58493906 58495447 -118478693 - L1 LINE L1 -1286 4860 3274 * 2356 126 19 3 chrX 58495454 58495818 -118478322 - L1PA11 LINE L1 -15 6159 5790 279 79 0 0 chrX 58495821 58495859 -118478281 + (TG)n Simple_repeat Simple_repeat 2 39 0 202 234 18 27 chrX 58495846 58495957 -118478183 + (TA)n Simple_repeat Simple_repeat 1 110 0 * 309 213 11 64 chrX 58495970 58496064 -118478076 - L1MC4 LINE L1 -1339 6703 6615 302 194 0 92 chrX 58496042 58496140 -118478000 + L1MC4 LINE L1 6615 6703 -1339 * 208 197 16 16 chrX 58496149 58496210 -118477930 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 11851 153 20 23 chrX 58496211 58497599 -118476541 - L1P4 LINE L1 -383 7229 5837 2299 94 3 10 chrX 58497599 58497908 -118476232 - AluY SINE Alu -4 307 1 11851 153 20 23 chrX 58497908 58499419 -118474721 - L1P4 LINE L1 -1775 5837 4351 2585 186 52 2 chrX 58499422 58499907 -118474233 - LTR22 LTR ERVK 0 509 1 376 35 0 35 chrX 58499930 58499988 -118474152 - HERVK22 LTR ERVK -8 6829 6774 * 44708 77 12 2 chrX 58499986 58502482 -118471658 - HERVK22 LTR ERVK -666 6171 3700 941 33 0 17 chrX 58502482 58502646 -118471494 + L1PA2 LINE L1 6037 6155 0 44708 77 12 2 chrX 58502646 58506261 -118467879 - HERVK22 LTR ERVK -3137 3700 3 2654 176 47 4 chrX 58506263 58506751 -118467389 - LTR22 LTR ERVK 0 509 1 396 176 0 0 chrX 58506751 58506825 -118467315 - L1P4 LINE L1 -3231 4353 4280 2663 81 21 5 chrX 58506830 58507211 -118466929 - MLT2A1 LTR ERVL -57 387 1 7742 244 35 21 chrX 58507211 58510916 -118463224 - L1P4 LINE L1 -3299 4285 1 2157 192 55 63 chrX 58510918 58511615 -118462525 - L1 LINE L1 -2865 3983 3293 2603 168 80 0 chrX 58511671 58512259 -118461881 - L1 LINE L1 -4413 2436 1802 210 250 0 0 chrX 58512260 58512320 -118461820 + T-rich Low_complexity Low_complexity 1 60 0 43332 42 8 1 chrX 58512322 58518437 -118455703 - L1PA4 LINE L1 -3 6152 1 1887 248 45 65 chrX 58518431 58519164 -118454976 - L1 LINE L1 -5043 1806 1089 * 237 258 65 0 chrX 58519375 58519437 -118454703 - L2 LINE L2 -1 3271 3206 24 67 0 0 chrX 58521441 58521486 -118452654 + AT_rich Low_complexity Low_complexity 1 45 0 294 202 48 24 chrX 58526126 58526210 -118447930 + MIR SINE MIR 99 184 -78 13726 131 60 7 chrX 58527824 58530118 -118444022 - Tigger1 DNA MER2_type -4 2414 1 22 56 0 0 chrX 58530550 58530586 -118443554 + AT_rich Low_complexity Low_complexity 1 36 0 432 275 162 30 chrX 58530943 58531290 -118442850 + Charlie8 DNA MER1_type 26 438 -1979 192 229 0 0 chrX 58531414 58531449 -118442691 + MIR3 SINE MIR 157 191 -17 3358 84 47 22 chrX 58532134 58532667 -118441473 - L1PA10 LINE L1 -3 6165 5620 243 54 0 54 chrX 58532697 58532734 -118441406 - L1PA10 LINE L1 -512 5639 5605 468 260 81 8 chrX 58532935 58533170 -118440970 - L1ME4a LINE L1 -262 5859 5608 21588 101 16 4 chrX 58533310 58537264 -118436876 + L1PA7 LINE L1 2808 6797 -73 * 30363 38 2 0 chrX 58537260 58541796 -118432344 + L1PA3 LINE L1 1610 6155 0 3121 68 10 0 chrX 58541768 58542182 -118431958 + L1PA4 LINE L1 5738 6155 0 * 24 0 0 0 chrX 58542185 58542209 -118431931 + AT_rich Low_complexity Low_complexity 1 24 0 33685 84 13 8 chrX 58542502 58548092 -118426048 + L1PA6 LINE L1 539 6154 0 385 82 41 0 chrX 58548427 58548500 -118425640 + L1MA2 LINE L1 6108 6183 -121 302 308 32 38 chrX 58548567 58548752 -118425388 - PABL_B-int LTR ERV1 -3147 4245 4062 254 214 48 24 chrX 58550008 58550092 -118424048 - PABL_B-int LTR ERV1 -4425 2697 2612 2123 118 21 3 chrX 58550922 58551253 -118422887 + L1PA14 LINE L1 5816 6152 -9 273 324 27 32 chrX 58551708 58551893 -118422247 - PABL_B-int LTR ERV1 -5382 1419 1236 311 257 173 56 chrX 58554338 58554517 -118419623 + MIR SINE MIR 13 212 -50 263 309 181 27 chrX 58555113 58555262 -118418878 - MIR3 SINE MIR -2 206 35 238 239 56 28 chrX 58555640 58555711 -118418429 + MIR3 SINE MIR 135 207 -1 475 247 53 57 chrX 58555743 58556006 -118418134 - L1ME LINE L1 -385 5736 5475 * 4926 160 32 13 chrX 58556005 58556378 -118417762 - L1PB4 LINE L1 -1 6806 6441 243 0 0 0 chrX 58556378 58556405 -118417735 + (TA)n Simple_repeat Simple_repeat 2 28 0 4926 160 32 13 chrX 58556405 58556726 -118417414 - L1PB4 LINE L1 -366 6441 6127 2280 161 102 38 chrX 58556726 58557204 -118416936 - LTR22 LTR ERVK 0 509 1 4926 160 32 13 chrX 58557204 58557631 -118416509 - L1PB4 LINE L1 -680 6127 5670 2024 107 4 0 chrX 58557631 58557911 -118416229 - THE1A LTR MaLR 0 355 75 1187 161 18 5 chrX 58557912 58558135 -118416005 - L1PB4 LINE L1 -1201 5596 5371 7158 187 25 14 chrX 58558147 58559795 -118414345 - L1PB4 LINE L1 -1884 4913 3284 6208 102 19 25 chrX 58559795 58560930 -118413210 - L1PA11 LINE L1 0 6174 5034 293 0 27 0 chrX 58560930 58560967 -118413173 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2000 120 3 11 chrX 58560969 58561252 -118412888 - AluSq SINE Alu -32 281 1 6208 102 19 25 chrX 58561252 58561973 -118412167 - L1PA11 LINE L1 -1141 5033 4311 7158 187 25 14 chrX 58561973 58562358 -118411782 - L1PB4 LINE L1 -3513 3284 2947 502 116 0 0 chrX 58562361 58562447 -118411693 - L1PB4 LINE L1 -4634 2153 2068 4541 235 47 32 chrX 58562551 58564185 -118409955 - L1PA12 LINE L1 -3861 3723 2114 2688 62 31 0 chrX 58564185 58564538 -118409602 + L1PA8 LINE L1 5809 6172 0 4541 235 47 32 chrX 58564538 58565409 -118408731 - L1PA12 LINE L1 -5470 2114 369 220 323 104 10 chrX 58565488 58565584 -118408556 + MER5B DNA MER1_type 1 105 -73 4799 139 0 56 chrX 58565584 58566464 -118407676 - THE1C-int LTR MaLR -746 834 4 1711 148 65 54 chrX 58566467 58566838 -118407302 - THE1C LTR MaLR 0 375 1 2186 128 0 0 chrX 58567057 58567355 -118406785 - AluSq SINE Alu -15 298 1 226 283 208 50 chrX 58567763 58567883 -118406257 + MIR3 SINE MIR 21 159 -49 2221 117 0 0 chrX 58568385 58568693 -118405447 + AluSc SINE Alu 1 308 -1 463 0 48 0 chrX 58570333 58570395 -118403745 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 307 222 22 22 chrX 58570397 58570487 -118403653 + L1MC3 LINE L1 6564 6653 -1132 187 306 0 32 chrX 58571007 58571069 -118403071 + MIR SINE MIR 88 147 -115 706 181 30 15 chrX 58571222 58571355 -118402785 - AluJo SINE Alu -177 135 1 3158 125 6 11 chrX 58571365 58571902 -118402238 - L1MA4A LINE L1 -11 6292 5759 1919 187 6 6 chrX 58571906 58572270 -118401870 - L1PB4 LINE L1 -4 6152 5789 207 0 0 0 chrX 58572270 58572293 -118401847 + (CA)n Simple_repeat Simple_repeat 2 24 0 39499 56 4 19 chrX 58572411 58578511 -118395629 - L1PA5 LINE L1 -147 6007 13 219 103 0 0 chrX 58578512 58578551 -118395589 + (T)n Simple_repeat Simple_repeat 1 39 0 1390 167 184 7 chrX 58578554 58578859 -118395281 - MSTA LTR MaLR -68 360 2 683 204 34 6 chrX 58578868 58579044 -118395096 - L1M4 LINE L1 -1156 4990 4810 6809 68 45 0 chrX 58579046 58580163 -118393977 - L1PA7 LINE L1 -2 7590 6451 22929 115 13 50 chrX 58580281 58584543 -118389597 - L1PA7 LINE L1 -1335 6249 1358 243 0 0 0 chrX 58584643 58584670 -118389470 + (CA)n Simple_repeat Simple_repeat 1 27 0 2575 127 6 52 chrX 58584674 58584994 -118389146 - L1P5 LINE L1 -376 5780 5488 1691 196 18 0 chrX 58584994 58585270 -118388870 + AluJo SINE Alu 1 281 -31 2575 127 6 52 chrX 58585270 58585429 -118388711 - L1P5 LINE L1 -668 5488 5323 2353 118 37 0 chrX 58585450 58585831 -118388309 - L1PA16 LINE L1 -3 6163 5769 232 118 215 97 chrX 58585846 58585939 -118388201 - Charlie2 DNA MER1_type -779 2083 1980 7753 183 21 5 chrX 58585957 58588462 -118385678 - L1PA8 LINE L1 0 6172 3516 343 160 40 0 chrX 58588455 58588530 -118385610 - L1 LINE L1 -1124 5022 4945 * 4554 190 20 96 chrX 58588526 58589537 -118384603 - L1P5 LINE L1 -880 5266 4350 1745 190 96 28 chrX 58589537 58589964 -118384176 + LOR1b LTR ERV1 6 461 0 4554 190 20 96 chrX 58589964 58590904 -118383236 - L1P5 LINE L1 -1796 4350 3340 397 289 0 63 chrX 58591958 58592100 -118382040 + MIR3 SINE MIR 63 195 -13 1504 126 0 0 chrX 58592449 58592696 -118381444 - L1PA7 LINE L1 -1280 4866 4620 6861 71 0 0 chrX 58592696 58593981 -118380159 + L1PA7 LINE L1 4865 6149 -5 1239 336 99 31 chrX 58594361 58595060 -118379080 - L3 LINE CR1 -106 1471 726 2467 169 44 9 chrX 58595075 58595601 -118378539 - L1MA9 LINE L1 0 6548 6005 4041 154 34 1 chrX 58595665 58596371 -118377769 - L1PA15 LINE L1 -1 6164 5436 4435 185 38 8 chrX 58596372 58597778 -118376362 - L1MA9 LINE L1 -527 6021 4565 3774 58 4 0 chrX 58597778 58598246 -118375894 - L1PA7 LINE L1 -1 6153 5684 4435 185 38 8 chrX 58598246 58598346 -118375794 - L1MA9 LINE L1 -1983 4565 4470 18087 174 31 25 chrX 58598349 58603174 -118370966 - L1MA1 LINE L1 0 7721 2827 2257 113 0 0 chrX 58603174 58603466 -118370674 + AluSg SINE Alu 5 296 -14 18087 174 31 25 chrX 58603466 58606295 -118367845 - L1MA1 LINE L1 -4894 2827 17 6082 224 62 31 chrX 58606302 58608413 -118365727 - L1MA9 LINE L1 -1900 4482 2308 * 6297 172 26 20 chrX 58608391 58610029 -118364111 - L1PB3 LINE L1 -3 6387 4736 2471 82 0 0 chrX 58610029 58610332 -118363808 - AluY SINE Alu -8 303 1 6297 172 26 20 chrX 58610332 58611081 -118363059 - L1PB3 LINE L1 -1654 4736 3993 579 198 35 19 chrX 58611275 58611562 -118362578 + LTR43 LTR ERV1 130 461 -141 3371 216 10 8 chrX 58611658 58612525 -118361615 - L1PB3 LINE L1 -2376 4486 3618 3640 208 118 8 chrX 58612526 58613508 -118360632 - L1PB3 LINE L1 -3687 3175 2091 8796 114 6 20 chrX 58613510 58613925 -118360215 - L1PA10 LINE L1 -1 6482 6063 2197 124 7 0 chrX 58613925 58614232 -118359908 - AluSc SINE Alu 0 309 1 8796 114 6 20 chrX 58614232 58616044 -118358096 - L1PA10 LINE L1 -420 6063 4167 2449 121 0 0 chrX 58616049 58616388 -118357752 - L1PA8 LINE L1 0 6172 5834 1467 161 47 0 chrX 58616389 58616644 -118357496 - L1PA10 LINE L1 -4892 983 717 836 189 13 16 chrX 58616651 58616959 -118357181 - L1PA10 LINE L1 -5374 501 1 5988 220 34 28 chrX 58616961 58617470 -118356670 - L1PB3 LINE L1 -4776 2087 1583 2224 99 0 3 chrX 58617470 58617774 -118356366 - AluY SINE Alu 0 303 1 5988 220 34 28 chrX 58617774 58620239 -118353901 - L1PB3 LINE L1 -5280 1583 37 872 235 6 0 chrX 58620269 58620439 -118353701 - FAM SINE Alu -6 43 1 700 257 24 8 chrX 58620452 58620701 -118353439 - L1MCc LINE L1 -4033 2910 2658 378 292 17 17 chrX 58620714 58620834 -118353306 + MSTD LTR MaLR 76 195 -201 5469 161 20 27 chrX 58620842 58621852 -118352288 + L1PA6 LINE L1 13 1015 -5131 24 67 0 0 chrX 58624120 58624165 -118349975 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chrX 58624373 58624399 -118349741 + AT_rich Low_complexity Low_complexity 1 26 0 16310 67 13 0 chrX 58624415 58626581 -118347559 + L1PA6 LINE L1 1001 3131 -3023 16310 77 10 0 chrX 58626581 58629499 -118344641 + L1PA6 LINE L1 3244 6154 0 3545 235 43 59 chrX 58629505 58630013 -118344127 - L1MCc LINE L1 -4321 2621 2106 501 226 0 0 chrX 58630013 58630097 -118344043 - AluS SINE Alu -229 84 1 3545 235 43 59 chrX 58630097 58631878 -118342262 - L1MCc LINE L1 -4836 2106 911 776 363 16 51 chrX 58631906 58632394 -118341746 - L3 LINE CR1 -891 686 216 3178 236 6 2 chrX 58632427 58633070 -118341070 + MER82 DNA MER2_type 2 647 -6 1985 171 45 29 chrX 58634135 58634678 -118339462 - MLT2A2 LTR ERVL 0 554 2 5729 97 21 13 chrX 58635623 58636396 -118337744 - MER4E LTR ERV1 0 779 1 2188 125 0 0 chrX 58637677 58637972 -118336168 + AluSx SINE Alu 1 295 -17 207 333 37 12 chrX 58638189 58638270 -118335870 + MIR SINE MIR 23 105 -157 2829 164 83 0 chrX 58638290 58638746 -118335394 - MER21B LTR ERV1 -369 494 1 2923 157 69 25 chrX 58638817 58639554 -118334586 - MER21B-int LTR ERV1 -52 4139 3314 2457 56 0 23 chrX 58639554 58639857 -118334283 + AluY SINE Alu 1 296 -15 2923 157 69 25 chrX 58639857 58639965 -118334175 - MER21B-int LTR ERV1 -877 3314 3212 20472 112 12 1 chrX 58639966 58642286 -118331854 - L1P LINE L1 -1482 4664 2302 188 33 0 33 chrX 58642286 58642316 -118331824 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 20472 112 12 1 chrX 58642316 58642981 -118331159 - L1P LINE L1 -3844 2302 1646 2866 124 16 23 chrX 58642981 58643418 -118330722 + MER4B-int LTR ERV1 3765 4198 -2560 1131 142 6 0 chrX 58643418 58643580 -118330560 + AluSx SINE Alu 1 163 -149 856 263 43 54 chrX 58643580 58643826 -118330314 - L1MCc LINE L1 -6053 370 123 2131 140 0 3 chrX 58643826 58644126 -118330014 - AluSx SINE Alu -13 299 1 856 263 43 54 chrX 58644126 58644196 -118329944 - L1MCc LINE L1 -6300 123 56 2296 122 0 0 chrX 58644196 58644508 -118329632 - AluSx SINE Alu 0 312 1 856 263 43 54 chrX 58644508 58644540 -118329600 - L1MCc LINE L1 -6367 56 25 302 283 18 134 chrX 58644652 58644875 -118329265 + L2 LINE L2 2685 2881 -433 1605 189 32 44 chrX 58644875 58645131 -118329009 - MER58B DNA MER1_type -2080 340 87 2139 127 3 0 chrX 58645131 58645430 -118328710 + AluSg SINE Alu 1 300 -10 1605 189 32 44 chrX 58645430 58645516 -118328624 - MER58B DNA MER1_type -2333 87 2 2230 77 7 14 chrX 58645589 58645922 -118328218 - AluY SINE Alu 0 331 1 447 284 102 43 chrX 58645922 58646225 -118327915 + L2 LINE L2 2989 3309 -4 2177 127 7 0 chrX 58646856 58647163 -118326977 + AluSg SINE Alu 2 310 0 488 43 43 0 chrX 58647169 58647238 -118326902 + (GGGAA)n Simple_repeat Simple_repeat 4 75 0 230 184 53 0 chrX 58647590 58647666 -118326474 + (TA)n Simple_repeat Simple_repeat 1 80 0 2123 194 88 22 chrX 58648008 58648472 -118325668 + MLT1D LTR MaLR 3 497 -8 1841 178 3 0 chrX 58648481 58648784 -118325356 + AluJb SINE Alu 1 304 -8 2013 171 42 34 chrX 58648949 58649334 -118324806 - MLT1B LTR MaLR -2 388 1 354 321 80 60 chrX 58650001 58650300 -118323840 - L2 LINE L2 -1231 2083 1779 1944 110 13 30 chrX 58650314 58650615 -118323525 + AluSq SINE Alu 1 296 -17 319 331 115 25 chrX 58650780 58650937 -118323203 - L2 LINE L2 0 3272 3102 1527 176 7 42 chrX 58651487 58651771 -118322369 - AluJo SINE Alu -17 295 22 2978 103 43 24 chrX 58651794 58652242 -118321898 - MER41A-int LTR ERV1 -2719 3966 3528 2082 128 0 0 chrX 58652242 58652530 -118321610 + AluSx SINE Alu 1 288 -24 2978 103 43 24 chrX 58652530 58652950 -118321190 - MER41A-int LTR ERV1 -3157 3528 1081 * 3822 142 52 36 chrX 58652938 58653645 -118320495 - MER41A-int LTR ERV1 -5322 624 1 2466 95 0 3 chrX 58653732 58654059 -118320081 - MER41A LTR ERV1 0 554 229 2068 95 91 5 chrX 58654361 58654724 -118319416 - LTR7 LTR ERV1 0 450 1 3745 104 14 14 chrX 58654724 58655281 -118318859 - HERVH LTR ERV1 0 7713 7157 * 13658 136 8 2 chrX 58655274 58657532 -118316608 - HERVH LTR ERV1 -1697 6016 3811 * 17172 147 4 21 chrX 58657531 58660033 -118314107 - HERVH LTR ERV1 -4127 3586 834 9605 44 4 1 chrX 58660033 58661101 -118313039 + MER11C LTR ERVK 1 1071 0 17172 147 4 21 chrX 58661101 58661922 -118312218 - HERVH LTR ERV1 -6879 834 1 2220 82 103 8 chrX 58661922 58662289 -118311851 - LTR7 LTR ERV1 0 450 1 4709 129 129 10 chrX 58662646 58663445 -118310695 + MER4D LTR ERV1 1 894 -9 1653 195 0 10 chrX 58663471 58663779 -118310361 - AluSx SINE Alu -7 305 1 1142 217 53 37 chrX 58663800 58663852 -118310288 - MER58B DNA MER1_type -2080 340 290 1192 207 14 5 chrX 58663852 58664069 -118310071 - MER20 DNA MER1_type 0 219 1 1142 217 53 37 chrX 58664069 58664315 -118309825 - MER58B DNA MER1_type -2130 290 37 676 176 48 26 chrX 58664349 58664532 -118309608 - MER33 DNA MER1_type -30 108 8 2982 167 19 6 chrX 58665152 58665678 -118308462 + Tigger6a DNA MER2_type 48 580 -503 805 144 6 89 chrX 58666242 58666422 -118307718 + L1PA15 LINE L1 6000 6164 -1 431 253 33 0 chrX 58666831 58666922 -118307218 + MER117 DNA MER1_type 4 97 -100 617 260 19 39 chrX 58667154 58667383 -118306757 - MLT1J2 LTR MaLR -196 213 15 2133 123 0 16 chrX 58669427 58669735 -118304405 + AluSq SINE Alu 1 303 -10 259 316 71 0 chrX 58670191 58670289 -118303851 + MIR SINE MIR 34 138 -70 180 0 0 0 chrX 58670595 58670615 -118303525 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2059 131 3 0 chrX 58672122 58672420 -118301720 + AluSx SINE Alu 1 299 -13 1926 122 20 14 chrX 58672550 58672844 -118301296 + AluSx SINE Alu 1 296 -16 2099 119 0 0 chrX 58673161 58673454 -118300686 + AluSx SINE Alu 1 293 -19 201 74 0 0 chrX 58676203 58676230 -118297910 + (T)n Simple_repeat Simple_repeat 1 27 0 209 306 0 0 chrX 58677079 58677128 -118297012 + L2 LINE L2 3192 3240 -32 213 39 0 0 chrX 58677873 58677899 -118296241 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 204 309 0 0 chrX 58678004 58678046 -118296094 + L2 LINE L2 3202 3243 -29 196 304 0 0 chrX 58678375 58678421 -118295719 + L2 LINE L2 3196 3241 -31 515 227 250 0 chrX 58678467 58678639 -118295501 + MER58C DNA MER1_type 1 215 0 274 203 30 80 chrX 58681238 58681371 -118292769 - MIR SINE MIR -25 237 53 191 339 102 0 chrX 58682246 58682364 -118291776 - MIR3 SINE MIR -8 200 71 2525 70 3 0 chrX 58682413 58682715 -118291425 + AluSp SINE Alu 2 304 -9 219 69 0 0 chrX 58683037 58683066 -118291074 + (GAA)n Simple_repeat Simple_repeat 2 30 0 2298 79 17 0 chrX 58684957 58685247 -118288893 + AluSp SINE Alu 1 295 -18 1507 147 95 11 chrX 58685789 58686062 -118288078 - AluJo SINE Alu -16 296 1 261 259 37 49 chrX 58687031 58687112 -118287028 + HAL1 LINE L1 1 80 -2427 291 273 58 65 chrX 58687567 58687608 -118286532 - MIR3 SINE MIR -13 195 155 2095 112 3 26 chrX 58687608 58687913 -118286227 + AluSq SINE Alu 1 298 -15 291 273 58 65 chrX 58687913 58688025 -118286115 - MIR3 SINE MIR -53 155 43 23 0 0 0 chrX 58688734 58688757 -118285383 + AT_rich Low_complexity Low_complexity 1 23 0 5741 131 117 84 chrX 58689342 58689955 -118284185 + L1MC3 LINE L1 6452 7044 -741 306 208 52 31 chrX 58689955 58690051 -118284089 + MLT1F1 LTR MaLR 36 133 -434 5741 131 117 84 chrX 58690051 58690628 -118283512 + L1MC3 LINE L1 7044 7779 -6 241 232 0 0 chrX 58694106 58694162 -118279978 + (TATG)n Simple_repeat Simple_repeat 4 59 0 25 0 0 0 chrX 58694682 58694707 -118279433 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chrX 58695071 58695098 -118279042 + AT_rich Low_complexity Low_complexity 1 27 0 772 113 139 0 chrX 58700309 58700424 -118273716 - FLAM_C SINE Alu -2 131 1 295 115 35 46 chrX 58702728 58702815 -118271325 + (CTGGGG)n Simple_repeat Simple_repeat 5 90 0 291 202 0 0 chrX 58703587 58703681 -118270459 + G-rich Low_complexity Low_complexity 1 94 0 246 269 30 0 chrX 58706184 58706251 -118267889 - MIR SINE MIR -112 150 82 2379 90 0 0 chrX 58707122 58707422 -118266718 + AluSx SINE Alu 1 300 -12 229 250 88 44 chrX 58707426 58707562 -118266578 + L1M4 LINE L1 5076 5217 -929 263 191 111 16 chrX 58708324 58708387 -118265753 - MIR SINE MIR -79 129 61 288 322 216 43 chrX 58708823 58709239 -118264901 + L3 LINE CR1 1083 1570 -7 1703 166 3 24 chrX 58709438 58709734 -118264406 + AluJo SINE Alu 1 290 -22 2213 94 31 0 chrX 58709761 58710048 -118264092 + AluSc SINE Alu 1 296 -13 822 246 5 5 chrX 58710052 58710251 -118263889 + L1M4 LINE L1 981 1179 -5363 5054 153 48 49 chrX 58710316 58711150 -118262990 - L1MA7 LINE L1 -3 6288 5454 2069 125 0 52 chrX 58711150 58711478 -118262662 - AluSx SINE Alu -1 311 1 2016 140 0 13 chrX 58711481 58711781 -118262359 - AluSx SINE Alu -16 296 1 5054 153 48 49 chrX 58711781 58711846 -118262294 - L1MA7 LINE L1 -839 5452 5388 2260 118 0 0 chrX 58711846 58712152 -118261988 - AluSx SINE Alu -6 306 1 5054 153 48 49 chrX 58712152 58712471 -118261669 - L1MA7 LINE L1 -903 5388 5058 2733 266 50 20 chrX 58712512 58713594 -118260546 - L1M2 LINE L1 -4163 2686 1573 2519 78 0 0 chrX 58714908 58715217 -118258923 + AluSx SINE Alu 1 309 -3 676 344 45 24 chrX 58715218 58715640 -118258500 - L1M2 LINE L1 -5710 1069 639 1501 229 34 19 chrX 58715641 58716112 -118258028 + L1M4 LINE L1 1162 1639 -4903 5456 219 106 49 chrX 58716121 58717504 -118256636 + L1M3e LINE L1 493 1795 -5312 2176 78 0 44 chrX 58717504 58717823 -118256317 + AluSg1 SINE Alu 1 306 0 5456 219 106 49 chrX 58717823 58717908 -118256232 + L1M3e LINE L1 1795 1874 -5233 1771 149 14 24 chrX 58717908 58718204 -118255936 + AluJb SINE Alu 6 298 -14 5456 219 106 49 chrX 58718204 58718488 -118255652 + L1M3e LINE L1 1874 2140 -4967 2382 97 0 0 chrX 58718488 58718786 -118255354 + AluSq SINE Alu 1 298 -15 5456 219 106 49 chrX 58718786 58719180 -118254960 + L1M3e LINE L1 2140 2778 -4329 2127 113 0 3 chrX 58719184 58719492 -118254648 + AluSx SINE Alu 1 307 0 1353 226 34 74 chrX 58719507 58719595 -118254545 + L1M1 LINE L1 3091 3181 -4384 1489 162 15 19 chrX 58719595 58719860 -118254280 + AluJo SINE Alu 33 296 -16 1353 226 34 74 chrX 58719860 58719966 -118254174 + L1M1 LINE L1 3181 3290 -4275 2105 123 7 13 chrX 58719966 58720274 -118253866 - AluSx SINE Alu 0 312 7 1353 226 34 74 chrX 58720274 58720425 -118253715 + L1M1 LINE L1 3290 3445 -4120 1628 201 0 10 chrX 58720425 58720734 -118253406 + AluJo SINE Alu 1 306 0 1353 226 34 74 chrX 58720734 58721196 -118252944 + L1M1 LINE L1 3445 3878 -3687 2137 133 0 0 chrX 58721196 58721489 -118252651 + AluSx SINE Alu 1 293 -19 304 296 23 0 chrX 58721513 58721601 -118252539 + L1MC4 LINE L1 6614 6703 -1339 253 133 0 0 chrX 58721612 58721657 -118252483 - LTR66 LTR ERVL -172 438 394 661 258 0 0 chrX 58721657 58721816 -118252324 + L1M1 LINE L1 3870 4028 -3537 2592 153 9 19 chrX 58721819 58722243 -118251897 + MER54B LTR ERVL 1 420 -373 2226 108 0 0 chrX 58722244 58722532 -118251608 + AluSx SINE Alu 1 288 -24 339 140 0 0 chrX 58722549 58722606 -118251534 + MER54B LTR ERVL 737 793 0 1697 205 63 95 chrX 58722671 58723261 -118250879 - HERVL74 LTR ERVL -534 5151 4581 954 156 13 0 chrX 58723241 58723395 -118250745 - HERVL74 LTR ERVL -1612 4073 3918 * 871 170 6 25 chrX 58723398 58723557 -118250583 - HERVL74 LTR ERVL -2043 3642 3487 639 197 15 45 chrX 58723550 58723628 -118250512 - HERVL74 LTR ERVL -2348 3337 3263 * 2325 110 0 3 chrX 58723628 58723938 -118250202 + AluSq SINE Alu 2 310 -3 639 197 15 45 chrX 58723938 58723991 -118250149 - HERVL74 LTR ERVL -2422 3263 3210 2376 83 3 6 chrX 58724004 58724316 -118249824 - AluSp SINE Alu 0 313 3 2038 137 7 0 chrX 58724322 58724621 -118249519 - AluSx SINE Alu -9 303 3 904 198 139 10 chrX 58724622 58724824 -118249316 - HERVL74 LTR ERVL -3219 2466 2239 791 194 0 0 chrX 58724826 58724960 -118249180 - HERVL74 LTR ERVL -3568 2117 1984 1407 202 11 39 chrX 58724960 58725284 -118248856 + L1M2 LINE L1 2528 2843 -4006 2408 89 0 3 chrX 58725284 58725587 -118248553 + AluSp SINE Alu 1 302 -11 1407 202 11 39 chrX 58725587 58725624 -118248516 + L1M2 LINE L1 2843 2879 -3970 2860 203 53 20 chrX 58725628 58725744 -118248396 + L1M2 LINE L1 2955 3066 -3782 1243 184 100 15 chrX 58725744 58726005 -118248135 + AluJo SINE Alu 1 283 -29 2860 203 53 20 chrX 58726005 58726110 -118248030 + L1M2 LINE L1 3066 3166 -3682 2163 72 21 4 chrX 58726110 58726428 -118247712 + AluSp SINE Alu 1 323 0 2860 203 53 20 chrX 58726428 58726851 -118247289 + L1M2 LINE L1 3166 3622 -3226 1344 296 31 20 chrX 58726859 58727334 -118246806 + L1PBb LINE L1 10 1170 -6415 2060 103 15 0 chrX 58728133 58728405 -118245735 - AluSx SINE Alu -36 276 1 391 273 63 124 chrX 58730099 58730605 -118243535 + L1PBb LINE L1 1330 1804 -5781 477 314 48 34 chrX 58730776 58730983 -118243157 + L1PBb LINE L1 1735 1944 -5641 634 228 90 6 chrX 58731040 58731207 -118242933 + L1PBb LINE L1 2175 2355 -5229 239 299 0 21 chrX 58731205 58731302 -118242838 - L1MC4 LINE L1 -1334 6708 6614 * 283 236 22 22 chrX 58731314 58731403 -118242737 + L1MC4 LINE L1 6614 6702 -1340 241 261 0 22 chrX 58731406 58731498 -118242642 + L1MC4 LINE L1 6614 6703 -1339 300 294 0 22 chrX 58731518 58731610 -118242530 + L1MC4 LINE L1 6614 6703 -1339 285 218 0 0 chrX 58731610 58731688 -118242452 + (TA)n Simple_repeat Simple_repeat 2 79 0 4772 165 79 103 chrX 58731690 58732163 -118241977 + L1PBb LINE L1 2416 2899 -4685 814 179 0 15 chrX 58732163 58732297 -118241843 - FLAM_C SINE Alu 0 133 2 4772 165 79 103 chrX 58732297 58732545 -118241595 + L1PBb LINE L1 2899 3151 -4433 2266 121 0 0 chrX 58732545 58732851 -118241289 - AluSg SINE Alu -4 306 1 4772 165 79 103 chrX 58732851 58733476 -118240664 + L1PBb LINE L1 3151 3730 -3854 3303 60 7 0 chrX 58733474 58733964 -118240176 - L1PA7 LINE L1 -480 5674 5182 * 4138 43 2 0 chrX 58733964 58734431 -118239709 + L1PA7 LINE L1 5685 6152 -2 2271 95 0 63 chrX 58734435 58734572 -118239568 + AluSx SINE Alu 1 145 -157 5649 87 32 19 chrX 58734572 58735753 -118238387 + SVA Other Other 16 1047 -339 2271 95 0 63 chrX 58735753 58735928 -118238212 + AluSx SINE Alu 145 297 -5 1123 255 9 17 chrX 58735928 58736292 -118237848 + L1 LINE L1 2246 2601 -3545 2320 105 0 0 chrX 58736292 58736596 -118237544 + AluSx SINE Alu 1 304 -8 2184 96 0 4 chrX 58736600 58736901 -118237239 + AluSg SINE Alu 3 302 0 360 288 85 26 chrX 58736901 58737054 -118237086 - L1MC4a LINE L1 -1297 6511 6350 2746 247 79 47 chrX 58737083 58737232 -118236908 - L1M4 LINE L1 -1099 5047 4904 2224 95 0 0 chrX 58737232 58737517 -118236623 + AluSg SINE Alu 1 285 -25 2746 247 79 47 chrX 58737517 58738149 -118235991 - L1M4 LINE L1 -1242 4904 4294 2144 97 3 35 chrX 58738149 58738468 -118235672 - AluSg SINE Alu -1 309 1 2746 247 79 47 chrX 58738468 58738911 -118235229 - L1M4 LINE L1 -1852 4294 3775 2423 54 7 10 chrX 58738911 58739207 -118234933 - AluY SINE Alu -16 295 1 2746 247 79 47 chrX 58739207 58739299 -118234841 - L1M4 LINE L1 -2371 3775 3687 4503 211 53 18 chrX 58739326 58741143 -118232997 - L1MA7 LINE L1 -29 6262 4510 2568 66 0 0 chrX 58741143 58741445 -118232695 - AluSq SINE Alu -11 302 1 4503 211 53 18 chrX 58741445 58742420 -118231720 - L1MA7 LINE L1 -1781 4510 2201 2535 245 66 11 chrX 58742548 58743332 -118230808 - L1MB8 LINE L1 -37 6141 5315 1346 233 46 22 chrX 58743323 58743517 -118230623 - L1MB8 LINE L1 -1406 4740 4552 * 2201 121 0 7 chrX 58743517 58743822 -118230318 - AluSg SINE Alu -7 303 1 1346 233 46 22 chrX 58743822 58744039 -118230101 - L1MB8 LINE L1 -1594 4552 4319 2143 102 23 13 chrX 58744046 58744349 -118229791 - AluSq SINE Alu -7 306 1 1732 219 14 11 chrX 58744380 58744749 -118229391 - L1MC3 LINE L1 -1127 6658 6289 373 248 129 0 chrX 58744747 58744955 -118229185 + L1M4 LINE L1 4037 4307 -1839 * 784 248 74 133 chrX 58744955 58745496 -118228644 - L1MCc LINE L1 -4968 1454 946 2287 63 4 0 chrX 58745732 58746003 -118228137 + AluSp SINE Alu 5 276 -37 503 309 49 21 chrX 58746120 58746405 -118227735 - L1MCc LINE L1 -6030 393 101 2324 97 0 3 chrX 58746542 58746851 -118227289 - AluSq SINE Alu -3 310 3 2073 134 0 16 chrX 58746876 58747183 -118226957 - AluSx SINE Alu -10 302 1 1993 244 71 54 chrX 58747212 58748066 -118226074 - L1MDa LINE L1 -4206 2334 1459 2507 71 0 3 chrX 58748066 58748376 -118225764 - AluY SINE Alu -2 309 1 1993 244 71 54 chrX 58748376 58748539 -118225601 - L1MDa LINE L1 -5081 1459 1300 * 2644 206 91 26 chrX 58748534 58749529 -118224611 - L1MB8 LINE L1 0 6178 5124 2845 213 53 110 chrX 58749552 58750205 -118223935 - L1MB8 LINE L1 -1375 4771 4082 1830 132 28 21 chrX 58750205 58750493 -118223647 + AluJb SINE Alu 6 295 -17 2845 213 53 110 chrX 58750493 58750918 -118223222 - L1MB8 LINE L1 -2064 4082 3634 2477 160 23 19 chrX 58750918 58751349 -118222791 + L1PA15 LINE L1 5733 6165 0 2845 213 53 110 chrX 58751349 58751522 -118222618 - L1MB8 LINE L1 -2512 3634 3604 2106 104 0 14 chrX 58751522 58751832 -118222308 - AluSx SINE Alu 0 306 1 2845 213 53 110 chrX 58751832 58751978 -118222162 - L1MB8 LINE L1 -2542 3604 3451 1220 93 0 0 chrX 58752009 58752170 -118221970 - AluSq SINE Alu -14 299 139 2000 127 7 26 chrX 58752171 58752479 -118221661 - AluSx SINE Alu -10 302 1 617 147 0 10 chrX 58752511 58752613 -118221527 - AluSg/x SINE Alu 0 310 210 1725 135 0 8 chrX 58752613 58752858 -118221282 - AluSx SINE Alu -69 243 1 1872 262 85 7 chrX 58752933 58753689 -118220451 - L1MB8 LINE L1 -2987 3159 2345 26 74 0 0 chrX 58753743 58753797 -118220343 + AT_rich Low_complexity Low_complexity 1 54 0 2471 76 7 0 chrX 58753852 58754156 -118219984 - AluSp SINE Alu -7 306 1 26 88 0 0 chrX 58754285 58754353 -118219787 + AT_rich Low_complexity Low_complexity 1 68 0 1533 158 96 11 chrX 58754413 58754685 -118219455 + AluJb SINE Alu 1 295 -17 227 274 78 20 chrX 58754846 58754948 -118219192 + L1MC/D LINE L1 5445 5552 -2256 729 296 31 0 chrX 58755238 58755495 -118218645 + HAL1b LINE L1 505 769 -579 198 115 58 0 chrX 58755589 58755641 -118218499 + (TA)n Simple_repeat Simple_repeat 2 56 0 47 44 0 0 chrX 58755648 58755716 -118218424 + AT_rich Low_complexity Low_complexity 1 68 0 352 226 54 60 chrX 58755763 58755931 -118218209 + HAL1b LINE L1 986 1152 -196 298 204 386 15 chrX 58755931 58756063 -118218077 - L1ME3 LINE L1 -7 6155 5975 288 247 71 0 chrX 58756154 58756239 -118217901 + HAL1b LINE L1 1218 1308 -40 1844 167 0 13 chrX 58756241 58756546 -118217594 - AluJb SINE Alu -11 301 1 23 54 0 0 chrX 58756610 58756647 -118217493 + AT_rich Low_complexity Low_complexity 1 37 0 2692 232 81 52 chrX 58757155 58757345 -118216795 + L1MDa LINE L1 2450 2633 -3907 2231 108 3 19 chrX 58757345 58757661 -118216479 + AluSq SINE Alu 1 311 -2 2692 232 81 52 chrX 58757661 58757853 -118216287 + L1MDa LINE L1 2633 2818 -3722 2191 110 3 7 chrX 58757853 58758153 -118215987 + AluSq SINE Alu 1 299 -14 2692 232 81 52 chrX 58758153 58758457 -118215683 + L1MDa LINE L1 2818 3112 -3428 2176 97 7 17 chrX 58758457 58758756 -118215384 - AluSx SINE Alu -16 296 1 2692 232 81 52 chrX 58758756 58759220 -118214920 + L1MDa LINE L1 3112 3634 -2906 2036 96 53 4 chrX 58759473 58759754 -118214386 - AluSq SINE Alu -18 295 1 5444 214 114 35 chrX 58759757 58760038 -118214102 - L1M3c LINE L1 -4612 2425 2168 1771 149 14 24 chrX 58760038 58760334 -118213806 - AluJb SINE Alu -14 298 6 5444 214 114 35 chrX 58760334 58760419 -118213721 - L1M3c LINE L1 -4869 2168 2091 2175 78 0 44 chrX 58760419 58760738 -118213402 - AluSg1 SINE Alu 0 306 1 5444 214 114 35 chrX 58760738 58762121 -118212019 - L1M3c LINE L1 -4946 2091 493 1501 229 34 19 chrX 58762130 58762601 -118211539 - L1M4 LINE L1 -4903 1639 1162 676 344 45 24 chrX 58762602 58763024 -118211116 + L1M3c LINE L1 639 1069 -5710 2530 74 0 0 chrX 58763025 58763334 -118210806 - AluSx SINE Alu -3 309 1 2263 258 31 5 chrX 58764648 58765387 -118208753 + L1M3c LINE L1 1573 2263 -4516 1813 226 50 58 chrX 58765491 58765787 -118208353 + L1M3c LINE L1 3188 3485 -3363 2181 97 7 17 chrX 58765787 58766086 -118208054 - AluSx SINE Alu -16 296 1 1813 226 50 58 chrX 58766086 58766550 -118207590 + L1M3c LINE L1 3485 3942 -2906 1560 159 57 14 chrX 58766801 58767084 -118207056 - AluSx SINE Alu -17 295 1 201 402 9 9 chrX 58767127 58767239 -118206901 - L2 LINE L2 -453 2861 2750 180 294 176 0 chrX 58767816 58767901 -118206239 + MIR SINE MIR 162 261 -1 433 331 145 47 chrX 58767970 58768609 -118205531 + L2 LINE L2 2572 3267 -5 221 283 0 0 chrX 58768655 58768708 -118205432 - MIR SINE MIR -58 150 98 290 186 0 43 chrX 58769023 58769093 -118205047 + MER20 DNA MER1_type 1 67 -152 728 126 146 0 chrX 58769097 58769248 -118204892 - L1MA4 LINE L1 -11 6289 6117 316 300 85 20 chrX 58769288 58769488 -118204652 - L1MC4 LINE L1 -241 7801 7589 * 355 192 0 0 chrX 58769485 58769558 -118204582 - L1MD1 LINE L1 -112 6130 6058 1653 90 9 0 chrX 58769767 58769979 -118204161 - AluSp SINE Alu -20 293 80 1267 287 63 13 chrX 58769981 58771076 -118203064 + L1MD3 LINE L1 1238 2416 -4543 2398 81 0 3 chrX 58771271 58771566 -118202574 - AluSp SINE Alu -19 294 1 21 57 0 0 chrX 58771683 58771718 -118202422 + AT_rich Low_complexity Low_complexity 1 35 0 2384 106 3 0 chrX 58771788 58772099 -118202041 - AluSx SINE Alu 0 312 1 2963 46 5 5 chrX 58772220 58772589 -118201551 + L1PA5 LINE L1 5784 6152 -2 741 296 89 38 chrX 58772812 58773237 -118200903 + L1M3de LINE L1 573 1019 -5634 359 350 0 0 chrX 58773458 58773561 -118200579 + L1MA7 LINE L1 269 371 -6282 3475 249 76 37 chrX 58773573 58773840 -118200300 + L1MA7 LINE L1 927 1182 -5550 2282 101 10 0 chrX 58773840 58774148 -118199992 - AluSp SINE Alu -1 312 2 3475 249 76 37 chrX 58774148 58775477 -118198663 + L1MA7 LINE L1 1182 2353 -4379 2247 102 0 0 chrX 58775477 58775771 -118198369 + AluSx SINE Alu 1 294 -18 3475 249 76 37 chrX 58775771 58777160 -118196980 + L1MA7 LINE L1 2353 3687 -3045 6142 202 57 27 chrX 58777270 58777368 -118196772 + L1MA7 LINE L1 4044 4138 -2739 2903 120 70 4 chrX 58777368 58777850 -118196290 + MER75 DNA T2_type 1 514 0 6142 202 57 27 chrX 58777850 58778228 -118195912 + L1MA7 LINE L1 4138 4503 -2374 2074 125 30 0 chrX 58778228 58778523 -118195617 - AluSx SINE Alu -8 304 1 6142 202 57 27 chrX 58778523 58779689 -118194451 + L1MA7 LINE L1 4503 5633 -1244 8040 73 10 8 chrX 58779689 58780758 -118193382 - MER11C LTR ERVK 0 1071 1 6142 202 57 27 chrX 58780758 58781865 -118192275 + L1MA7 LINE L1 5633 6877 0 265 262 73 18 chrX 58782070 58782234 -118191906 + L1MD3 LINE L1 2997 3169 -3788 * 606 266 131 86 chrX 58782225 58782353 -118191787 + L1MD3 LINE L1 3551 3672 -3285 2101 108 27 3 chrX 58782353 58782649 -118191491 + AluSx SINE Alu 2 304 -8 606 266 131 86 chrX 58782649 58783626 -118190514 + L1MD3 LINE L1 3672 4603 -2354 228 35 0 0 chrX 58783626 58783655 -118190485 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 606 266 131 86 chrX 58783655 58783675 -118190465 + L1MD3 LINE L1 4603 4621 -2336 2108 140 0 0 chrX 58783675 58783982 -118190158 + AluSx SINE Alu 1 307 -5 606 266 131 86 chrX 58783982 58784065 -118190075 + L1MD3 LINE L1 4621 4699 -2258 1060 219 146 4 chrX 58784065 58784325 -118189815 + AluJo SINE Alu 3 299 -3 606 266 131 86 chrX 58784325 58784837 -118189303 + L1MD3 LINE L1 4699 5352 -1605 2249 84 7 7 chrX 58784842 58785139 -118189001 + AluSg SINE Alu 2 298 -12 1529 264 134 28 chrX 58785172 58785268 -118188872 + L1MD3 LINE L1 5940 6024 -2782 2245 115 0 10 chrX 58785268 58785573 -118188567 - AluSp SINE Alu -11 302 1 1529 264 134 28 chrX 58785573 58785769 -118188371 + L1MD3 LINE L1 6024 6198 -2608 1999 99 3 64 chrX 58785769 58786083 -118188057 - AluSx SINE Alu -17 295 1 1529 264 134 28 chrX 58786083 58786878 -118187262 + L1MD3 LINE L1 6198 8790 -16 362 247 53 7 chrX 58787162 58787312 -118186828 + L1M1 LINE L1 2979 3135 -4430 518 214 9 18 chrX 58787337 58787449 -118186691 - FLAM_A SINE Alu -20 122 12 2906 284 78 15 chrX 58787548 58788892 -118185248 + L1 LINE L1 1251 2749 -4597 252 0 0 0 chrX 58788892 58788920 -118185220 + (TA)n Simple_repeat Simple_repeat 1 28 0 2906 284 78 15 chrX 58788920 58789407 -118184733 + L1 LINE L1 2749 3204 -4142 803 210 62 89 chrX 58789529 58789717 -118184423 + L1 LINE L1 3433 3625 -3940 2057 92 28 18 chrX 58789717 58790001 -118184139 + AluSq SINE Alu 1 287 -26 803 210 62 89 chrX 58790001 58790355 -118183785 + L1 LINE L1 3625 3970 -3595 3223 239 88 66 chrX 58790356 58791261 -118182879 + L1MA5 LINE L1 1727 2610 -4955 1770 82 0 4 chrX 58791261 58791492 -118182648 + AluSx SINE Alu 1 230 -82 3223 239 88 66 chrX 58791492 58792322 -118181818 + L1MA5 LINE L1 2610 3501 -4064 1030 258 80 36 chrX 58792332 58792917 -118181223 + L1MA5 LINE L1 5013 5623 -1942 1138 194 149 3 chrX 58792926 58793282 -118180858 + L1MA5 LINE L1 5822 6229 -1336 6788 248 159 6 chrX 58793653 58798175 -118175965 + L1PA15 LINE L1 1264 6506 -310 2285 250 109 5 chrX 58798239 58798427 -118175713 + L1MA5 LINE L1 6739 6906 -813 2100 126 0 0 chrX 58798427 58798704 -118175436 - AluSx SINE Alu -35 277 1 2285 250 109 5 chrX 58798704 58799379 -118174761 + L1MA5 LINE L1 6906 7692 -27 739 169 134 0 chrX 58799483 58799655 -118174485 + L1 LINE L1 5423 5617 -1948 648 222 144 16 chrX 58799661 58799817 -118174323 + L1 LINE L1 5710 5845 -1720 5498 145 29 45 chrX 58799817 58800906 -118173234 - MER11C LTR ERVK 0 1071 1 648 222 144 16 chrX 58800906 58801055 -118173085 + L1 LINE L1 5845 6054 -1511 2369 83 3 6 chrX 58801200 58801512 -118172628 - AluSp SINE Alu 0 313 3 1975 141 10 0 chrX 58801518 58801816 -118172324 - AluSx SINE Alu -9 303 3 748 195 150 10 chrX 58801817 58802017 -118172123 - HERVL74 LTR ERVL -3219 2466 2239 706 201 0 0 chrX 58802019 58802153 -118171987 - HERVL74 LTR ERVL -3568 2117 1984 1263 200 11 39 chrX 58802153 58802477 -118171663 + L1M2 LINE L1 2528 2843 -4006 2407 89 0 3 chrX 58802477 58802780 -118171360 + AluSp SINE Alu 1 302 -11 1263 200 11 39 chrX 58802780 58802815 -118171325 + L1M2 LINE L1 2843 2877 -3972 2593 206 50 17 chrX 58802821 58802937 -118171203 + L1M2 LINE L1 2955 3066 -3782 1262 192 100 15 chrX 58802937 58803198 -118170942 + AluJo SINE Alu 1 283 -29 2593 206 50 17 chrX 58803198 58803303 -118170837 + L1M2 LINE L1 3066 3166 -3682 2098 72 25 4 chrX 58803303 58803620 -118170520 + AluSp SINE Alu 1 323 0 2593 206 50 17 chrX 58803620 58804041 -118170099 + L1M2 LINE L1 3166 3620 -3228 1217 299 31 17 chrX 58804051 58804526 -118169614 + L1PB4 LINE L1 10 1157 -6428 2053 103 15 0 chrX 58805325 58805597 -118168543 - AluSx SINE Alu -36 276 1 369 262 23 143 chrX 58807355 58807797 -118166343 + L1PB4 LINE L1 1416 1804 -5781 426 321 18 12 chrX 58808010 58808175 -118165965 + L1PB4 LINE L1 1779 1944 -5641 570 228 90 6 chrX 58808232 58808399 -118165741 + L1PB4 LINE L1 2175 2355 -5229 308 305 0 21 chrX 58808399 58808494 -118165646 - L1MC4 LINE L1 -1336 6706 6614 246 287 0 0 chrX 58808506 58808593 -118165547 + L1MC4 LINE L1 6614 6700 -1342 335 261 0 22 chrX 58808598 58808690 -118165450 + L1MC4 LINE L1 6614 6703 -1339 307 299 23 0 chrX 58808617 58808704 -118165436 - L1MC4 LINE L1 -1340 6702 6614 * 200 227 0 0 chrX 58808704 58808748 -118165392 + (TA)n Simple_repeat Simple_repeat 2 45 0 312 274 0 63 chrX 58808749 58808844 -118165296 + L1MC4 LINE L1 6615 6703 -1339 4221 164 80 103 chrX 58808846 58809319 -118164821 + L1PB4 LINE L1 2416 2898 -4686 760 179 0 15 chrX 58809319 58809453 -118164687 - FLAM_C SINE Alu 0 133 2 4221 164 80 103 chrX 58809453 58809701 -118164439 + L1PB4 LINE L1 2898 3150 -4434 2275 121 0 0 chrX 58809701 58810007 -118164133 - AluSg SINE Alu -4 306 1 4221 164 80 103 chrX 58810007 58810631 -118163509 + L1PB4 LINE L1 3150 3730 -3854 3076 60 7 0 chrX 58810629 58811119 -118163021 - L1PA7 LINE L1 -480 5674 5182 * 3884 43 2 0 chrX 58811119 58811586 -118162554 + L1PA7 LINE L1 5685 6152 -2 2139 95 0 63 chrX 58811590 58811727 -118162413 + AluSx SINE Alu 1 145 -192 5546 88 32 19 chrX 58811727 58812908 -118161232 + SVA Other Other 16 1047 -339 2139 95 0 63 chrX 58812908 58813123 -118161017 + AluSx SINE Alu 145 337 0 6997 212 17 30 chrX 58813125 58813447 -118160693 + L1PB4 LINE L1 3720 4045 -3539 2409 97 0 0 chrX 58813447 58813758 -118160382 + AluSp SINE Alu 1 311 -2 6997 212 17 30 chrX 58813758 58814198 -118159942 + L1PB4 LINE L1 4045 4489 -3095 2463 72 9 3 chrX 58814198 58814532 -118159608 + L1PA13 LINE L1 5828 6163 0 6997 212 17 30 chrX 58814532 58815217 -118158923 + L1PB4 LINE L1 4489 5181 -2403 2223 73 42 0 chrX 58815217 58815506 -118158634 + AluY SINE Alu 1 301 -10 6997 212 17 30 chrX 58815506 58816116 -118158024 + L1PB4 LINE L1 5181 5797 -1787 1869 138 37 0 chrX 58816116 58816414 -118157726 + AluSg SINE Alu 1 309 -1 6997 212 17 30 chrX 58816414 58816426 -118157714 + L1PB4 LINE L1 5797 5808 -1776 2204 128 0 0 chrX 58816426 58816723 -118157417 + AluSx SINE Alu 1 297 -15 6997 212 17 30 chrX 58816723 58816900 -118157240 + L1PB4 LINE L1 5808 5924 -1660 2033 85 3 44 chrX 58816902 58817196 -118156944 + AluY SINE Alu 1 282 -29 28944 24 0 1 chrX 58817197 58821360 -118152780 + L1PA2 LINE L1 1997 6154 -1 1797 212 14 14 chrX 58821369 58821381 -118152759 + L1PB4 LINE L1 5915 5926 -1658 2253 118 3 0 chrX 58821381 58821685 -118152455 + AluSx SINE Alu 1 305 -7 1797 212 14 14 chrX 58821685 58822102 -118152038 + L1PB4 LINE L1 5925 6344 -1240 854 212 28 0 chrX 58822103 58822282 -118151858 + L1PB4 LINE L1 6939 7122 -472 24276 110 19 30 chrX 58822287 58825765 -118148375 + L1P3 LINE L1 1 3515 -2946 2187 126 0 0 chrX 58825765 58826059 -118148081 + AluSg SINE Alu 2 295 -15 24276 110 19 30 chrX 58826059 58827332 -118146808 + L1P3 LINE L1 3515 4786 -1675 7537 56 2 0 chrX 58827332 58828890 -118145250 + L1PA7 LINE L1 4584 6143 -11 24276 110 19 30 chrX 58828890 58828914 -118145226 + L1P3 LINE L1 4786 4809 -1652 1911 134 11 0 chrX 58828918 58829194 -118144946 + AluSx SINE Alu 3 281 -31 1923 132 0 7 chrX 58829289 58829562 -118144578 + AluSg SINE Alu 2 272 -38 234 0 0 0 chrX 58829705 58829731 -118144409 + (CA)n Simple_repeat Simple_repeat 2 27 0 1906 107 31 28 chrX 58829733 58830022 -118144118 + AluSp SINE Alu 2 291 -22 2492 201 9 2 chrX 58830042 58830504 -118143636 + L1PB4 LINE L1 7116 7580 -14 2160 152 38 31 chrX 58830510 58830563 -118143577 + L1M1 LINE L1 5287 5338 -965 2293 114 0 0 chrX 58830563 58830871 -118143269 + AluSg SINE Alu 1 308 -2 2160 152 38 31 chrX 58830871 58830938 -118143202 + L1M1 LINE L1 5338 5403 -900 2137 96 0 30 chrX 58830938 58831239 -118142901 + AluSg SINE Alu 1 292 -18 2160 152 38 31 chrX 58831239 58831562 -118142578 + L1M1 LINE L1 5403 5721 -582 * 3327 162 28 58 chrX 58831548 58831602 -118142538 - L1 LINE L1 -1591 4555 4501 312 27 0 0 chrX 58831602 58831639 -118142501 + (TG)n Simple_repeat Simple_repeat 2 38 0 3327 162 28 58 chrX 58831639 58831817 -118142323 - L1 LINE L1 -1645 4501 4319 2146 105 7 7 chrX 58831817 58832113 -118142027 - AluSq SINE Alu -17 296 1 3327 162 28 58 chrX 58832113 58832466 -118141674 - L1 LINE L1 -1827 4319 3995 2359 90 7 0 chrX 58832466 58832776 -118141364 - AluSp SINE Alu -1 312 1 3327 162 28 58 chrX 58832776 58832941 -118141199 - L1 LINE L1 -2151 3995 3826 2148 105 7 20 chrX 58832987 58833282 -118140858 - AluSx SINE Alu -21 291 1 309 198 47 19 chrX 58833312 58833370 -118140770 + L1 LINE L1 4436 4500 -1646 333 0 0 0 chrX 58833370 58833407 -118140733 + (CA)n Simple_repeat Simple_repeat 2 38 0 309 198 47 19 chrX 58833407 58833454 -118140686 + L1 LINE L1 4500 4544 -1602 2231 123 0 0 chrX 58833606 58833907 -118140233 - AluSg SINE Alu -9 301 1 1621 140 32 14 chrX 58834029 58834308 -118139832 + MER101B LTR ERV1 1 284 -286 1732 186 66 38 chrX 58834308 58834352 -118139788 - MSTB LTR MaLR -1 425 384 2472 67 0 0 chrX 58834352 58834650 -118139490 + AluY SINE Alu 1 298 -13 1732 186 66 38 chrX 58834650 58834970 -118139170 - MSTB LTR MaLR -42 384 51 2740 111 17 6 chrX 58834971 58835331 -118138809 + THE1B LTR MaLR 1 364 0 10397 102 30 36 chrX 58835331 58836844 -118137296 + THE1B-int LTR MaLR 1 1503 -77 1291 237 40 16 chrX 58836842 58837222 -118136918 - L1M4 LINE L1 -1547 4599 4211 * 6946 166 31 66 chrX 58837248 58837702 -118136438 - L1PA16 LINE L1 -300 5866 5398 2171 117 0 0 chrX 58837702 58838000 -118136140 - AluSc SINE Alu -11 298 1 6946 166 31 66 chrX 58838000 58838686 -118135454 - L1PA16 LINE L1 -768 5398 4690 774 95 0 0 chrX 58838686 58838791 -118135349 - AluY SINE Alu 0 311 207 6946 166 31 66 chrX 58838791 58839344 -118134796 - L1PA16 LINE L1 -1476 4690 4176 2339 90 6 6 chrX 58839344 58839655 -118134485 - AluY SINE Alu 0 311 1 6946 166 31 66 chrX 58839655 58840146 -118133994 - L1PA16 LINE L1 -1990 4176 3670 240 333 88 10 chrX 58840343 58840445 -118133695 + L2 LINE L2 3163 3272 0 2044 155 0 0 chrX 58840749 58841045 -118133095 - AluJb SINE Alu -16 296 1 2338 110 3 0 chrX 58841065 58841375 -118132765 - AluSp SINE Alu -2 311 1 2293 107 0 25 chrX 58841931 58842250 -118131890 - AluSx SINE Alu -1 311 1 2280 114 0 3 chrX 58842282 58842589 -118131551 + AluSx SINE Alu 1 306 -6 1523 121 40 14 chrX 58843053 58843276 -118130864 + MER30 DNA MER1_type 2 230 0 254 327 124 13 chrX 58843280 58843433 -118130707 + MIR3 SINE MIR 21 190 -18 1852 174 3 10 chrX 58843979 58844115 -118130025 + AluJb SINE Alu 1 136 -176 2320 100 0 0 chrX 58844115 58844415 -118129725 + AluSg SINE Alu 1 300 -10 1852 174 3 10 chrX 58844415 58844583 -118129557 + AluJb SINE Alu 136 303 -9 22 0 0 0 chrX 58844788 58844810 -118129330 + AT_rich Low_complexity Low_complexity 1 22 0 2228 86 7 0 chrX 58845423 58845713 -118128427 - AluSx SINE Alu -20 292 1 201 279 88 59 chrX 58845770 58845906 -118128234 - MIR3 SINE MIR -57 151 12 226 281 56 45 chrX 58845934 58846023 -118128117 + L2 LINE L2 3139 3228 -44 224 309 32 71 chrX 58846134 58846260 -118127880 - L2 LINE L2 -9 3263 3143 2738 212 9 48 chrX 58848309 58848373 -118125767 + MLT1E3 LTR MaLR 5 70 -554 2073 188 95 35 chrX 58848373 58848835 -118125305 - LTR2B LTR ERV1 0 490 1 2738 212 9 48 chrX 58848835 58849415 -118124725 + MLT1E3 LTR MaLR 70 624 0 1368 211 126 29 chrX 58849707 58850049 -118124091 + MLT2B1 LTR ERVL 1 375 -145 317 183 0 17 chrX 58850222 58850282 -118123858 - MLT2B1 LTR ERVL -107 413 355 235 118 0 0 chrX 58850273 58850307 -118123833 + MLT2B1 LTR ERVL 480 513 -2 * 2364 84 3 16 chrX 58850495 58850804 -118123336 + AluSp SINE Alu 1 305 -8 1017 215 36 5 chrX 58850903 58851122 -118123018 + MIR SINE MIR 5 230 -32 879 177 0 0 chrX 58851631 58851761 -118122379 + FLAM_A SINE Alu 1 130 -3 2296 103 3 0 chrX 58851808 58852118 -118122022 + AluSq SINE Alu 1 311 -2 2350 181 47 2 chrX 58852146 58852554 -118121586 - MSTB LTR MaLR 0 426 1 2346 94 0 0 chrX 58852683 58852980 -118121160 + AluSx SINE Alu 1 297 -15 223 200 0 0 chrX 58853608 58853656 -118120484 + MIR SINE MIR 107 153 -109 7456 154 27 32 chrX 58853785 58854491 -118119649 - L1MA8 LINE L1 -4 7706 6998 2525 43 0 13 chrX 58854491 58854793 -118119347 - AluY SINE Alu -13 298 1 7456 154 27 32 chrX 58854793 58855008 -118119132 - L1MA8 LINE L1 -712 6998 6783 1958 141 20 16 chrX 58855008 58855314 -118118826 - AluSx SINE Alu -5 307 1 7456 154 27 32 chrX 58855314 58855841 -118118299 - L1MA8 LINE L1 -927 6783 6255 2438 62 7 7 chrX 58855841 58856145 -118117995 + AluSp SINE Alu 1 304 -9 7456 154 27 32 chrX 58856145 58856285 -118117855 - L1MA8 LINE L1 -1455 6255 6116 2321 99 3 3 chrX 58856285 58856588 -118117552 - AluSp SINE Alu -10 303 1 7456 154 27 32 chrX 58856588 58856829 -118117311 - L1MA8 LINE L1 -1594 6116 5875 2404 75 7 7 chrX 58856829 58857135 -118117005 - AluSx SINE Alu -6 306 1 7456 154 27 32 chrX 58857135 58857752 -118116388 - L1MA8 LINE L1 -1835 5875 5270 2302 80 0 3 chrX 58857790 58858099 -118116041 + AluSp SINE Alu 1 308 0 1544 241 16 55 chrX 58858129 58858375 -118115765 - L1MA8 LINE L1 -4291 3274 3020 2140 136 0 0 chrX 58858375 58858683 -118115457 - AluSx SINE Alu -4 308 1 1544 241 16 55 chrX 58858683 58858733 -118115407 - L1MA8 LINE L1 -4545 3020 2970 2342 97 0 0 chrX 58858733 58859031 -118115109 - AluSx SINE Alu -14 298 1 1544 241 16 55 chrX 58859031 58859244 -118114896 - L1MA8 LINE L1 -4595 2970 2784 2350 89 3 0 chrX 58859248 58859539 -118114601 + AluSp SINE Alu 3 294 -19 332 287 86 17 chrX 58859734 58859908 -118114232 - L1M4c LINE L1 -4543 1841 1656 713 143 9 0 chrX 58860201 58860313 -118113827 + AluSp/q SINE Alu 186 298 -15 2144 84 7 24 chrX 58860364 58860660 -118113480 - AluSp SINE Alu -22 291 1 647 238 95 24 chrX 58860663 58860830 -118113310 - L1M2 LINE L1 -4474 2375 2221 2357 100 0 0 chrX 58860830 58861140 -118113000 - AluSx SINE Alu -2 310 1 647 238 95 24 chrX 58861140 58861266 -118112874 - L1M2 LINE L1 -4628 2221 2061 2263 84 0 0 chrX 58861577 58861862 -118112278 + AluSx SINE Alu 15 299 -13 2308 101 0 7 chrX 58861953 58862260 -118111880 + AluSx SINE Alu 1 305 -7 266 346 8 77 chrX 58862341 58862396 -118111744 + L2 LINE L2 3136 3193 -79 2309 109 3 0 chrX 58862396 58862700 -118111440 - AluSx SINE Alu -5 307 3 266 346 8 77 chrX 58862700 58862774 -118111366 + L2 LINE L2 3193 3256 -16 1841 157 47 3 chrX 58862805 58863104 -118111036 + AluJb SINE Alu 1 312 0 2200 127 3 7 chrX 58863139 58863447 -118110693 + AluSx SINE Alu 1 307 -5 1817 163 86 0 chrX 58863447 58863773 -118110367 - L1M4 LINE L1 -380 5804 5451 668 109 73 36 chrX 58863773 58863910 -118110230 - MER96B DNA MER1_type? -86 331 190 1816 184 3 3 chrX 58864131 58864441 -118109699 + AluJb SINE Alu 1 310 -2 2683 134 8 64 chrX 58864581 58864654 -118109486 + L1PA16 LINE L1 5717 5792 -374 2384 80 0 13 chrX 58864654 58864967 -118109173 + AluSc SINE Alu 1 309 0 2683 134 8 64 chrX 58864967 58865362 -118108778 + L1PA16 LINE L1 5792 6159 -7 1209 214 53 41 chrX 58865561 58865903 -118108237 + MLT2C1 LTR ERVL 1 346 -51 2128 86 4 0 chrX 58866020 58866287 -118107853 - AluSp SINE Alu -45 268 1 1916 125 3 46 chrX 58866296 58866599 -118107541 - AluSx SINE Alu -22 290 1 25 0 0 0 chrX 58866785 58866810 -118107330 + AT_rich Low_complexity Low_complexity 1 25 0 250 215 35 97 chrX 58866930 58867074 -118107066 + L1MB7 LINE L1 2337 2471 -4378 2419 70 3 3 chrX 58867088 58867386 -118106754 + AluSq SINE Alu 1 298 -15 565 216 5 155 chrX 58867386 58867599 -118106541 + L1MB7 LINE L1 4784 4964 -1884 21 57 0 0 chrX 58867667 58867702 -118106438 + AT_rich Low_complexity Low_complexity 1 35 0 1123 193 40 5 chrX 58867703 58867905 -118106235 - MER2 DNA MER2_type -135 210 2 4670 174 63 60 chrX 58867925 58868694 -118105446 + L1MB7 LINE L1 4965 5730 -1156 1760 156 13 29 chrX 58868694 58869009 -118105131 + AluJb SINE Alu 3 312 0 2321 82 0 19 chrX 58869016 58869299 -118104841 + AluSx SINE Alu 1 279 -33 266 85 0 21 chrX 58869299 58869346 -118104794 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2321 82 0 19 chrX 58869346 58869380 -118104760 + AluSx SINE Alu 279 312 0 4670 174 63 60 chrX 58869380 58870363 -118103777 + L1MB7 LINE L1 5735 6727 -159 2484 85 0 0 chrX 58870363 58870668 -118103472 - AluSx SINE Alu -7 305 1 4670 174 63 60 chrX 58870668 58870808 -118103332 + L1MB7 LINE L1 6727 6865 -21 260 27 27 0 chrX 58871166 58871203 -118102937 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2115 122 0 0 chrX 58871206 58871485 -118102655 - AluSx SINE Alu -33 279 1 216 0 0 0 chrX 58871718 58871742 -118102398 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2278 95 0 25 chrX 58872470 58872785 -118101355 + AluSx SINE Alu 1 307 -5 2034 90 65 7 chrX 58872857 58873136 -118101004 - AluSx SINE Alu -16 296 2 2104 112 26 3 chrX 58873988 58874293 -118099847 + AluSx SINE Alu 1 312 0 1239 83 0 61 chrX 58874340 58874520 -118099620 - AluSg/x SINE Alu -9 303 135 289 338 59 0 chrX 58874712 58874848 -118099292 + MIR SINE MIR 63 206 -56 705 281 123 35 chrX 58876067 58876433 -118097707 + L1MC4a LINE L1 5523 5920 -1888 1226 116 12 0 chrX 58876813 58876986 -118097154 - AluSq SINE Alu -9 304 130 31 0 0 0 chrX 58876986 58877017 -118097123 + AT_rich Low_complexity Low_complexity 1 31 0 189 74 0 0 chrX 58877017 58877044 -118097096 + (GA)n Simple_repeat Simple_repeat 2 28 0 1968 132 4 0 chrX 58877046 58877327 -118096813 - AluSx SINE Alu -30 282 1 2390 86 3 3 chrX 58877835 58878148 -118095992 - AluSp SINE Alu 0 313 1 2600 55 0 3 chrX 58879039 58879348 -118094792 - AluY SINE Alu -3 308 1 281 85 0 23 chrX 58879402 58879451 -118094689 + AluSc SINE Alu 253 293 -6 637 284 61 61 chrX 58879611 58879865 -118094275 - L1MC5 LINE L1 -48 7913 7657 2435 80 0 0 chrX 58879865 58880164 -118093976 - AluSq SINE Alu -14 299 1 637 284 61 61 chrX 58880164 58880367 -118093773 - L1MC5 LINE L1 -303 7658 7456 2419 72 0 0 chrX 58880784 58881076 -118093064 - AluSc SINE Alu -17 292 1 1019 203 112 2 chrX 58881124 58881369 -118092771 - L1MB5 LINE L1 0 6178 5908 2346 128 100 2 chrX 58881370 58881769 -118092371 - Tigger2 DNA MER2_type -1 2717 2280 350 154 62 0 chrX 58881767 58881832 -118092308 - Tigger2 DNA MER2_type -2649 69 1 * 747 173 80 7 chrX 58881833 58881983 -118092157 - L1MB5 LINE L1 -266 5908 5748 2264 67 27 20 chrX 58882008 58882307 -118091833 - AluSg SINE Alu -9 301 1 1717 206 97 17 chrX 58882310 58882334 -118091806 + L1MD1 LINE L1 2188 2209 -4331 1862 172 0 0 chrX 58882334 58882630 -118091510 + AluJb SINE Alu 1 296 -16 1717 206 97 17 chrX 58882630 58883029 -118091111 + L1MD1 LINE L1 2209 2575 -3965 2196 113 0 3 chrX 58883029 58883329 -118090811 + AluSx SINE Alu 1 299 -13 1717 206 97 17 chrX 58883329 58883733 -118090407 + L1MD1 LINE L1 2575 3074 -3466 230 57 75 0 chrX 58883746 58883799 -118090341 + (TA)n Simple_repeat Simple_repeat 1 57 0 2322 73 0 3 chrX 58883799 58884087 -118090053 - AluSq SINE Alu -26 287 1 4927 216 56 45 chrX 58884092 58884711 -118089429 + L1MD1 LINE L1 4122 4732 -1904 2137 88 3 55 chrX 58884711 58885018 -118089122 - AluSc SINE Alu -16 293 3 4927 216 56 45 chrX 58885018 58886251 -118087889 + L1MD1 LINE L1 4732 5998 -638 2253 97 7 13 chrX 58886251 58886387 -118087753 + AluSp SINE Alu 1 136 -177 2275 86 14 0 chrX 58886387 58886679 -118087461 + AluY SINE Alu 1 296 -15 2253 97 7 13 chrX 58886679 58886852 -118087288 + AluSp SINE Alu 136 308 -5 4927 216 56 45 chrX 58886852 58887183 -118086957 + L1MD1 LINE L1 5998 6324 -312 1297 102 0 0 chrX 58887183 58887360 -118086780 - AluSg/x SINE Alu -6 303 127 1619 94 0 0 chrX 58887360 58887563 -118086577 - AluSg SINE Alu -107 203 1 2146 101 17 3 chrX 58887711 58888009 -118086131 - AluSg SINE Alu -8 302 1 968 211 79 22 chrX 58888029 58888257 -118085883 + Charlie1a DNA MER1_type 49 289 -1166 807 155 12 87 chrX 58888260 58888421 -118085719 + FRAM SINE Alu 4 152 -24 2261 212 58 7 chrX 58888421 58888968 -118085172 + Charlie1a DNA MER1_type 276 850 -605 2469 84 0 3 chrX 58888968 58889279 -118084861 + AluSx SINE Alu 1 310 -2 5001 215 70 18 chrX 58889279 58890153 -118083987 - L1MB5 LINE L1 -702 5642 4815 2365 106 0 0 chrX 58890153 58890456 -118083684 - AluSx SINE Alu -8 304 2 5001 215 70 18 chrX 58890456 58890838 -118083302 - L1MB5 LINE L1 -1529 4815 4454 204 40 0 0 chrX 58890838 58890863 -118083277 + (TG)n Simple_repeat Simple_repeat 2 26 0 2378 63 3 0 chrX 58890870 58891156 -118082984 - AluSp SINE Alu -26 287 1 5001 215 70 18 chrX 58891156 58891402 -118082738 - L1MB5 LINE L1 -1895 4449 4217 2367 102 0 0 chrX 58891402 58891706 -118082434 - AluSq SINE Alu -9 304 1 5001 215 70 18 chrX 58891706 58891972 -118082168 - L1MB5 LINE L1 -2127 4217 3775 6922 146 130 50 chrX 58892031 58892916 -118081224 - L1MCa LINE L1 -4188 2238 1425 2379 94 0 0 chrX 58892916 58893215 -118080925 - AluSg1 SINE Alu -10 299 1 6922 146 130 50 chrX 58893215 58893999 -118080141 - L1MCa LINE L1 -5001 1425 435 2860 141 65 59 chrX 58893999 58894150 -118079990 - LTR1 LTR ERV1 0 785 636 2243 108 3 0 chrX 58894150 58894446 -118079694 - AluSg SINE Alu -13 297 1 2860 141 65 59 chrX 58894446 58894883 -118079257 - LTR1 LTR ERV1 -149 636 194 325 135 0 0 chrX 58894883 58894935 -118079205 - LTR1 LTR ERV1 -551 234 183 2082 109 0 45 chrX 58894936 58895247 -118078893 - AluSx SINE Alu -14 298 2 405 213 0 0 chrX 58895250 58895344 -118078796 - L1M4b LINE L1 -5306 1553 1460 2919 181 25 4 chrX 58895371 58895884 -118078256 - MER68 LTR ERV1 -28 534 11 2990 232 49 38 chrX 58895890 58896117 -118078023 - L1M4b LINE L1 -5396 1463 1240 2393 84 3 3 chrX 58896117 58896428 -118077712 - AluSq SINE Alu -2 311 1 2990 232 49 38 chrX 58896428 58897085 -118077055 - L1M4b LINE L1 -5619 1240 570 227 309 102 61 chrX 58897078 58897324 -118076816 - L1MCc LINE L1 -5353 1070 815 * 990 172 38 11 chrX 58898124 58898310 -118075830 - L1MD3 LINE L1 -302 7693 7503 235 278 44 0 chrX 58898298 58898388 -118075752 - L1MC4 LINE L1 -1334 6708 6615 * 408 353 0 0 chrX 58898388 58898510 -118075630 + (CA)n Simple_repeat Simple_repeat 1 122 0 226 241 127 25 chrX 58898511 58898590 -118075550 + L1MC4 LINE L1 6616 6702 -1340 438 269 0 0 chrX 58898614 58898748 -118075392 + (TA)n Simple_repeat Simple_repeat 1 134 0 992 202 83 14 chrX 58898748 58899046 -118075094 - L1MD3 LINE L1 -487 7508 6989 927 293 44 6 chrX 58899060 58899401 -118074739 - L1MC3 LINE L1 -902 6883 6530 1269 104 0 0 chrX 58899440 58899604 -118074536 - AluSg/x SINE Alu -20 292 129 1238 97 0 0 chrX 58899604 58899759 -118074381 - AluSg/x SINE Alu -10 300 146 988 211 74 39 chrX 58899859 58900196 -118073944 + L1MB8 LINE L1 4423 4771 -1375 2644 206 91 26 chrX 58900219 58901214 -118072926 + L1MB8 LINE L1 5124 6178 0 1999 244 71 53 chrX 58901209 58901372 -118072768 + L1MDa LINE L1 1300 1459 -5081 * 2507 71 0 3 chrX 58901372 58901682 -118072458 + AluY SINE Alu 1 309 -2 1999 244 71 53 chrX 58901682 58902535 -118071605 + L1MDa LINE L1 1459 2334 -4206 2073 134 0 16 chrX 58902564 58902871 -118071269 + AluSx SINE Alu 1 302 -10 2324 97 0 3 chrX 58902896 58903205 -118070935 + AluSq SINE Alu 3 310 -3 503 309 49 21 chrX 58903342 58903627 -118070513 + L1MCc LINE L1 101 393 -6030 2295 69 4 0 chrX 58903744 58904019 -118070121 - AluSp SINE Alu -37 276 1 21 57 0 0 chrX 58904136 58904171 -118069969 + AT_rich Low_complexity Low_complexity 1 35 0 2377 106 3 0 chrX 58904240 58904551 -118069589 - AluSx SINE Alu 0 312 1 3165 46 5 5 chrX 58904672 58905041 -118069099 + L1PA5 LINE L1 5784 6152 -2 880 311 77 39 chrX 58905062 58905689 -118068451 + L1M3d LINE L1 564 1073 -5580 388 350 0 0 chrX 58905910 58906013 -118068127 + L1M3de LINE L1 269 371 -6282 815 285 27 5 chrX 58906025 58906246 -118067894 + L1M3de LINE L1 927 1152 -5501 1442 194 107 20 chrX 58906380 58906566 -118067574 - L1MDa LINE L1 -3699 2841 2673 2196 113 0 3 chrX 58906566 58906866 -118067274 - AluSx SINE Alu -13 299 1 1442 194 107 20 chrX 58906866 58907265 -118066875 - L1MDa LINE L1 -3867 2673 2209 1862 172 0 0 chrX 58907265 58907561 -118066579 - AluJb SINE Alu -16 296 1 1442 194 107 20 chrX 58907561 58907585 -118066555 - L1MDa LINE L1 -4331 2209 2188 2264 67 27 20 chrX 58907588 58907887 -118066253 + AluSg SINE Alu 1 301 -9 747 173 80 7 chrX 58907912 58908062 -118066078 + L1MB5 LINE L1 5748 5908 -266 350 154 62 0 chrX 58908063 58908128 -118066012 + Tigger2 DNA MER2_type 1 69 -2649 * 2346 128 100 2 chrX 58908126 58908525 -118065615 + Tigger2 DNA MER2_type 2280 2717 -1 1019 203 112 2 chrX 58908526 58908771 -118065369 + L1MB5 LINE L1 5908 6178 0 2390 94 0 0 chrX 58908819 58909127 -118065013 + AluSc SINE Alu 1 308 -1 2338 110 3 0 chrX 58909683 58909993 -118064147 + AluSp SINE Alu 1 311 -2 2044 155 0 0 chrX 58910013 58910309 -118063831 + AluJb SINE Alu 1 296 -16 240 333 88 10 chrX 58910613 58910715 -118063425 - L2 LINE L2 0 3272 3163 6956 165 31 66 chrX 58910912 58911404 -118062736 + L1PA16 LINE L1 3670 4177 -1989 2339 90 6 6 chrX 58911404 58911715 -118062425 + AluY SINE Alu 1 311 0 6956 165 31 66 chrX 58911715 58912268 -118061872 + L1PA16 LINE L1 4177 4748 -1418 774 95 0 0 chrX 58912268 58912373 -118061767 + AluY SINE Alu 207 311 0 6956 165 31 66 chrX 58912373 58913059 -118061081 + L1PA16 LINE L1 4748 5398 -768 2171 117 0 0 chrX 58913059 58913357 -118060783 + AluSc SINE Alu 1 298 -11 6956 165 31 66 chrX 58913357 58913811 -118060329 + L1PA16 LINE L1 5398 5866 -300 1206 232 45 19 chrX 58913837 58914216 -118059924 + L1M4 LINE L1 4211 4599 -1547 * 10397 102 30 36 chrX 58914214 58915727 -118058413 - THE1B-int LTR MaLR -77 1503 1 2740 111 17 6 chrX 58915727 58916087 -118058053 - THE1B LTR MaLR 0 364 1 1718 186 66 38 chrX 58916088 58916408 -118057732 + MSTB LTR MaLR 51 384 -42 2472 67 0 0 chrX 58916408 58916706 -118057434 - AluY SINE Alu -13 298 1 1718 186 66 38 chrX 58916706 58916750 -118057390 + MSTB LTR MaLR 384 425 -1 1591 139 32 18 chrX 58916750 58917030 -118057110 - MER101B LTR ERV1 -286 284 1 2269 116 0 0 chrX 58917152 58917453 -118056687 + AluSg SINE Alu 1 301 -9 309 198 47 19 chrX 58917605 58917652 -118056488 - L1 LINE L1 -1602 4544 4500 351 0 0 0 chrX 58917652 58917691 -118056449 + (TG)n Simple_repeat Simple_repeat 2 40 0 309 198 47 19 chrX 58917691 58917749 -118056391 - L1 LINE L1 -1646 4500 4436 2148 105 7 20 chrX 58917779 58918074 -118056066 + AluSx SINE Alu 1 291 -21 3352 163 26 58 chrX 58918120 58918285 -118055855 + L1 LINE L1 3826 3995 -2151 2359 90 7 0 chrX 58918285 58918595 -118055545 + AluSp SINE Alu 1 312 -1 3352 163 26 58 chrX 58918595 58918948 -118055192 + L1 LINE L1 3995 4358 -1788 1831 149 7 7 chrX 58918948 58919244 -118054896 + AluSq SINE Alu 1 296 -17 3352 163 26 58 chrX 58919244 58919423 -118054717 + L1 LINE L1 4358 4501 -1645 312 27 0 0 chrX 58919423 58919460 -118054680 + (CA)n Simple_repeat Simple_repeat 2 38 0 3352 163 26 58 chrX 58919460 58919514 -118054626 + L1 LINE L1 4501 4555 -1591 1973 141 38 27 chrX 58919500 58919824 -118054316 - L1M1 LINE L1 -582 5721 5391 * 2137 96 0 30 chrX 58919824 58920125 -118054015 - AluSg SINE Alu -18 292 1 1973 141 38 27 chrX 58920125 58920168 -118053972 - L1M1 LINE L1 -912 5391 5350 1375 172 45 30 chrX 58920290 58920622 -118053518 + L1PA15 LINE L1 5829 6165 0 641 223 13 90 chrX 58920633 58920795 -118053345 - L1 LINE L1 -2410 3736 3607 2106 104 0 14 chrX 58920795 58921105 -118053035 - AluSx SINE Alu 0 306 1 641 223 13 90 chrX 58921105 58921251 -118052889 - L1 LINE L1 -2539 3607 3451 1220 93 0 0 chrX 58921282 58921443 -118052697 - AluSq SINE Alu -14 299 139 2000 127 7 26 chrX 58921444 58921752 -118052388 - AluSx SINE Alu -10 302 1 617 147 0 10 chrX 58921784 58921886 -118052254 - AluSg/x SINE Alu 0 310 210 1725 135 0 8 chrX 58921886 58922131 -118052009 - AluSx SINE Alu -69 243 1 1872 262 85 7 chrX 58922206 58922962 -118051178 - L1 LINE L1 -2987 3159 2345 26 74 0 0 chrX 58923016 58923070 -118051070 + AT_rich Low_complexity Low_complexity 1 54 0 801 60 10 0 chrX 58923125 58923225 -118050915 - AluSp/q SINE Alu -8 305 205 227 274 78 20 chrX 58923447 58923549 -118050591 - L1MC/D LINE L1 -2256 5552 5445 1533 158 96 11 chrX 58923710 58923982 -118050158 - AluJb SINE Alu -17 295 1 26 88 0 0 chrX 58924042 58924110 -118050030 + AT_rich Low_complexity Low_complexity 1 68 0 1757 116 34 0 chrX 59024234 59024501 -117949639 - AluSx SINE Alu -36 276 1 468 262 23 144 chrX 59026259 59026702 -117947438 + L1MA1 LINE L1 681 1069 -5781 489 314 48 34 chrX 59026873 59027080 -117947060 + L1MA1 LINE L1 1000 1209 -5641 635 228 90 6 chrX 59027137 59027304 -117946836 + L1MA1 LINE L1 1440 1620 -5229 228 130 43 0 chrX 59027305 59027351 -117946789 + L1MC4 LINE L1 6656 6703 -1339 219 220 0 0 chrX 59027354 59027404 -117946736 + (TA)n Simple_repeat Simple_repeat 1 50 0 272 292 0 0 chrX 59027411 59027500 -117946640 + L1MC4 LINE L1 6614 6702 -1340 229 256 0 22 chrX 59027503 59027593 -117946547 + L1MC4 LINE L1 6614 6701 -1341 4666 166 80 104 chrX 59027715 59028182 -117945958 + L1MA1 LINE L1 1687 2164 -4685 762 179 0 15 chrX 59028182 59028316 -117945824 - FLAM_C SINE Alu 0 133 2 4666 166 80 104 chrX 59028316 59028564 -117945576 + L1MA1 LINE L1 2164 2416 -4433 2280 121 0 0 chrX 59028564 59028870 -117945270 - AluSg SINE Alu -4 306 1 4666 166 80 104 chrX 59028870 59029495 -117944645 + L1MA1 LINE L1 2416 2995 -3854 3287 60 7 0 chrX 59029493 59029983 -117944157 - L1PA7 LINE L1 -480 5674 5182 * 3952 43 2 0 chrX 59029983 59030450 -117943690 + L1PA7 LINE L1 5685 6152 -2 2119 101 0 63 chrX 59030454 59030591 -117943549 + AluSx SINE Alu 1 145 -157 5772 87 32 19 chrX 59030591 59031772 -117942368 + SVA Other Other 16 1047 -339 2119 101 0 63 chrX 59031772 59031947 -117942193 + AluSx SINE Alu 145 297 -5 1099 255 9 17 chrX 59031947 59032311 -117941829 + L1MA1 LINE L1 2949 3304 -3545 2339 105 0 0 chrX 59032311 59032615 -117941525 + AluSx SINE Alu 1 304 -8 2208 96 0 4 chrX 59032619 59032920 -117941220 + AluSg SINE Alu 3 302 0 349 283 80 0 chrX 59032920 59033033 -117941107 - L1MC4a LINE L1 -1297 6511 6390 3812 154 12 2 chrX 59033186 59033829 -117940311 + L1MA1 LINE L1 4388 5037 -1812 2388 65 3 10 chrX 59034311 59034345 -117939795 - AluY SINE Alu 0 311 278 396 0 0 0 chrX 59034345 59034389 -117939751 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 2388 65 3 10 chrX 59034389 59034669 -117939471 - AluY SINE Alu -33 278 1 7228 124 57 4 chrX 59035525 59037267 -117936873 + L1MA1 LINE L1 5023 6996 -9 2287 92 3 3 chrX 59039033 59039325 -117934815 + AluSx SINE Alu 1 292 -20 476 239 45 26 chrX 59039341 59039496 -117934644 + L1MC4 LINE L1 6912 7069 -973 454 144 15 159 chrX 59039521 59039563 -117934577 + MLT1B LTR MaLR 8 54 -336 870 215 25 0 chrX 59039563 59039721 -117934419 + FAM SINE Alu 5 166 -9 454 144 15 159 chrX 59039721 59039810 -117934330 + MLT1B LTR MaLR 54 120 -270 4313 174 14 8 chrX 59039813 59040591 -117933549 + MLT1-int LTR MaLR 105 887 -484 292 234 75 11 chrX 59040650 59040744 -117933396 + MLT-int LTR MaLR 680 779 -956 1520 236 26 1 chrX 59040829 59041161 -117932979 + MLT1-int LTR MaLR 959 1252 -119 408 176 121 0 chrX 59041161 59041252 -117932888 + MLT1-int LTR MaLR 1 102 -1269 1137 139 5 62 chrX 59041253 59041461 -117932679 + MLT1B LTR MaLR 193 388 -2 375 182 82 36 chrX 59041466 59041576 -117932564 + L1MC5 LINE L1 6979 7093 -868 748 259 6 0 chrX 59041593 59041759 -117932381 - FAM SINE Alu -8 167 1 667 194 20 60 chrX 59041765 59041966 -117932174 + L1MC5 LINE L1 7349 7541 -420 3031 191 16 2 chrX 59042491 59043041 -117931099 - MER74A LTR ERVL 0 558 1 1896 247 56 61 chrX 59043067 59043787 -117930353 - HERVL74 LTR ERVL -44 5641 4926 498 168 40 2 chrX 59043834 59044007 -117930133 + MSTB1 LTR MaLR 1 212 -220 357 238 38 8 chrX 59044216 59044346 -117929794 + LTR43 LTR ERV1 187 472 -207 2765 145 44 78 chrX 59044422 59044973 -117929167 - HERVL74 LTR ERVL -3530 2155 1624 2863 151 68 4 chrX 59044973 59045504 -117928636 - L1MB2 LINE L1 0 6171 5607 1733 154 7 37 chrX 59045505 59045803 -117928337 - AluJo SINE Alu -11 301 13 552 158 0 0 chrX 59045814 59045896 -117928244 - HERVL74 LTR ERVL -2761 2924 2843 1827 190 40 20 chrX 59045909 59046256 -117927884 - HERVL74 LTR ERVL -3093 2592 2239 4732 190 26 37 chrX 59046264 59046422 -117927718 - HERVL74 LTR ERVL -3575 2110 1952 2358 100 3 0 chrX 59046422 59046722 -117927418 + AluSx SINE Alu 1 301 -11 4732 190 26 37 chrX 59046722 59047526 -117926614 - HERVL74 LTR ERVL -3733 1952 1157 1780 146 65 4 chrX 59047526 59047801 -117926339 - AluJo SINE Alu -20 292 1 4732 190 26 37 chrX 59047801 59047826 -117926314 - HERVL74 LTR ERVL -4528 1157 1133 206 192 39 26 chrX 59047867 59047945 -117926195 + (TA)n Simple_repeat Simple_repeat 2 80 0 445 212 0 9 chrX 59048095 59048208 -117925932 - MER107 DNA MER1_type -20 177 66 330 26 0 0 chrX 59049319 59049344 -117924796 + (CA)n Simple_repeat Simple_repeat 1 64 0 330 26 0 0 chrX 59049344 59049383 -117924757 + (CA)n Simple_repeat Simple_repeat 2 40 0 2952 159 4 31 chrX 59049394 59049878 -117924262 + MER54A LTR ERVL 17 487 -414 1076 252 27 12 chrX 59049883 59050212 -117923928 + L1M4 LINE L1 1370 1703 -4839 * 12888 253 28 25 chrX 59050204 59053012 -117921128 - L1PA12 LINE L1 -1454 6130 3296 2503 67 0 10 chrX 59053012 59053326 -117920814 - AluY SINE Alu 0 311 1 12888 253 28 25 chrX 59053326 59055792 -117918348 - L1PA12 LINE L1 -4288 3296 839 228 284 11 32 chrX 59055792 59055887 -117918253 - L1PA12 LINE L1 -6988 593 501 669 207 24 12 chrX 59055930 59056094 -117918046 - L1M4 LINE L1 -1817 4329 4164 207 0 0 0 chrX 59056114 59056137 -117918003 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 906 89 0 0 chrX 59056150 59056286 -117917854 - AluY SINE Alu 0 305 170 215 286 27 9 chrX 59056481 59056593 -117917547 + (TATATG)n Simple_repeat Simple_repeat 1 114 0 977 201 6 0 chrX 59056710 59056879 -117917261 - AluJb SINE Alu -9 303 134 2369 92 0 0 chrX 59056880 59057183 -117916957 - AluSg SINE Alu -7 303 1 2135 101 0 0 chrX 59057185 59057463 -117916677 - AluSc SINE Alu -31 278 1 31318 117 15 48 chrX 59057743 59064117 -117910023 + L1PA7 LINE L1 1 6154 0 762 217 33 5 chrX 59064117 59064301 -117909839 + L1M4 LINE L1 4810 4998 -1148 1529 167 184 7 chrX 59064302 59064607 -117909533 + MSTA LTR MaLR 2 360 -68 219 103 0 0 chrX 59064610 59064649 -117909491 + (A)n Simple_repeat Simple_repeat 1 39 0 42986 54 4 1 chrX 59064650 59070781 -117903359 + L1PA5 LINE L1 13 6154 0 2712 241 44 17 chrX 59070793 59071541 -117902599 - Tigger1 DNA MER2_type -1637 781 14 1164 230 79 3 chrX 59071579 59071801 -117902339 - L1 LINE L1 -1710 4436 4232 198 0 0 0 chrX 59071801 59071823 -117902317 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1164 230 79 3 chrX 59071823 59071992 -117902148 - L1 LINE L1 -1914 4232 4015 407 194 396 0 chrX 59072011 59072150 -117901990 - Tigger1 DNA MER2_type -1862 556 363 943 264 22 0 chrX 59072150 59072423 -117901717 - L1 LINE L1 -2168 3978 3700 1099 252 99 25 chrX 59072445 59072889 -117901251 - L1MA6 LINE L1 0 7719 7243 3750 241 59 48 chrX 59073263 59073399 -117900741 - L1MA6 LINE L1 -816 6749 6616 4808 45 0 8 chrX 59073399 59074000 -117900140 - L1PA3 LINE L1 -1 6154 5559 3750 241 59 48 chrX 59074000 59074975 -117899165 - L1MA6 LINE L1 -949 6616 5411 2454 66 0 25 chrX 59074975 59075293 -117898847 - AluY SINE Alu -1 310 1 3750 241 59 48 chrX 59075293 59075907 -117898233 - L1MA6 LINE L1 -2154 5411 4805 1823 252 137 20 chrX 59075893 59077023 -117897117 - L1MA6 LINE L1 -2989 4576 3316 * 2835 248 96 15 chrX 59077083 59078760 -117895380 - L1MA4 LINE L1 -14 6286 4433 5541 144 29 45 chrX 59078760 59079849 -117894291 + MER11C LTR ERVK 1 1071 0 2835 248 96 15 chrX 59079849 59080005 -117894135 - L1MA4 LINE L1 -1867 4433 4291 795 169 134 0 chrX 59080011 59080183 -117893957 - L1MA4 LINE L1 -1948 4198 4004 2529 252 112 5 chrX 59080287 59080962 -117893178 - L1MA5 LINE L1 -27 7692 6902 2084 126 0 0 chrX 59080962 59081239 -117892901 + AluSx SINE Alu 1 277 -35 2529 252 112 5 chrX 59081239 59081463 -117892677 - L1MA5 LINE L1 -817 6902 6703 7715 253 160 7 chrX 59081491 59086175 -117887965 - L1PA15 LINE L1 -310 6506 1097 1230 240 104 17 chrX 59086384 59087334 -117886806 - L1MA5 LINE L1 -1336 6229 5013 3677 243 85 63 chrX 59087344 59088174 -117885966 - L1MA5 LINE L1 -4064 3501 2691 1774 82 0 4 chrX 59088174 59088405 -117885735 - AluSx SINE Alu -82 230 1 3677 243 85 63 chrX 59088405 59089310 -117884830 - L1MA5 LINE L1 -4874 2691 1727 908 210 62 89 chrX 59089311 59089665 -117884475 - L1 LINE L1 -3595 2733 2388 2046 88 28 18 chrX 59089665 59089949 -117884191 - AluSq SINE Alu -26 287 1 908 210 62 89 chrX 59089949 59090137 -117884003 - L1 LINE L1 -3940 2388 2196 3214 282 79 16 chrX 59090259 59090746 -117883394 - L1 LINE L1 -4116 1212 757 252 0 0 0 chrX 59090746 59090774 -117883366 + (TA)n Simple_repeat Simple_repeat 1 28 0 3214 282 79 16 chrX 59090774 59092118 -117882022 - L1 LINE L1 -4571 757 14 517 214 9 18 chrX 59092217 59092329 -117881811 + FLAM_A SINE Alu 12 122 -20 403 247 53 7 chrX 59092354 59092504 -117881636 - L1M1 LINE L1 -4430 3135 2979 1777 262 137 29 chrX 59092788 59093583 -117880557 - L1MD3 LINE L1 -16 7979 7271 2084 92 0 60 chrX 59093583 59093897 -117880243 + AluSx SINE Alu 1 295 -17 1777 262 137 29 chrX 59093897 59094093 -117880047 - L1MD3 LINE L1 -724 7271 7098 2214 112 0 10 chrX 59094093 59094398 -117879742 + AluSp SINE Alu 1 302 -11 1777 262 137 29 chrX 59094398 59094476 -117879664 - L1MD3 LINE L1 -897 7098 5148 2238 88 7 7 chrX 59094529 59094826 -117879314 - AluSg SINE Alu -12 298 2 731 287 84 30 chrX 59094831 59095333 -117878807 - L1MD3 LINE L1 -1605 4541 4013 1056 219 146 4 chrX 59095343 59095603 -117878537 - AluJo SINE Alu -3 299 3 2082 140 0 0 chrX 59095686 59095993 -117878147 - AluSx SINE Alu -5 307 1 404 327 101 25 chrX 59096111 59096429 -117877711 - L1MD3 LINE L1 -2429 3717 3376 758 246 70 22 chrX 59096529 59096815 -117877325 - L1MD3 LINE L1 -2973 3173 2860 2096 108 27 3 chrX 59096815 59097112 -117877028 - AluSx SINE Alu -7 305 2 758 246 70 22 chrX 59097112 59097242 -117876898 - L1MD3 LINE L1 -3286 2860 2738 301 258 95 26 chrX 59097231 59097421 -117876719 - L1MD3 LINE L1 -3788 2358 2156 * 6686 202 57 27 chrX 59097600 59098707 -117875433 - L1MA7 LINE L1 0 6877 5805 8040 72 10 8 chrX 59098707 59099776 -117874364 + MER11C LTR ERVK 1 1071 0 6686 202 57 27 chrX 59099776 59100941 -117873199 - L1MA7 LINE L1 -1072 5805 4677 2052 125 30 0 chrX 59100941 59101236 -117872904 + AluSx SINE Alu 1 304 -8 6686 202 57 27 chrX 59101236 59101614 -117872526 - L1MA7 LINE L1 -2200 4677 4138 2932 120 70 4 chrX 59101614 59102096 -117872044 - MER75 DNA T2_type 0 514 1 6686 202 57 27 chrX 59102096 59102194 -117871946 - L1MA7 LINE L1 -2739 4138 4044 3835 251 77 38 chrX 59102304 59103697 -117870443 - L1MA7 LINE L1 -3045 3687 2349 2237 102 0 0 chrX 59103697 59103991 -117870149 - AluSx SINE Alu -18 294 1 3835 251 77 38 chrX 59103991 59105320 -117868820 - L1MA7 LINE L1 -4383 2349 1182 2269 101 10 0 chrX 59105320 59105628 -117868512 + AluSp SINE Alu 2 312 -1 3835 251 77 38 chrX 59105628 59105895 -117868245 - L1MA7 LINE L1 -5550 1182 927 390 350 0 0 chrX 59105907 59106010 -117868130 - L1MA7 LINE L1 -6282 371 269 880 311 77 39 chrX 59106231 59106858 -117867282 - L1M3de LINE L1 -5580 1073 564 2957 46 5 5 chrX 59106879 59107248 -117866892 - L1PA5 LINE L1 -2 6152 5784 2355 106 3 0 chrX 59107369 59107680 -117866460 + AluSx SINE Alu 1 312 0 21 57 0 0 chrX 59107749 59107784 -117866356 + AT_rich Low_complexity Low_complexity 1 35 0 2382 81 0 3 chrX 59107901 59108196 -117865944 + AluSp SINE Alu 1 294 -19 1384 307 70 15 chrX 59108391 59109455 -117864685 - L1M4c LINE L1 -4543 2103 952 1639 90 9 0 chrX 59109488 59109700 -117864440 + AluSp SINE Alu 80 293 -20 376 192 0 0 chrX 59109909 59109982 -117864158 + L1MD1 LINE L1 6058 6130 -112 371 270 95 30 chrX 59109979 59110179 -117863961 + L1MC4 LINE L1 7589 7801 -241 * 772 126 146 0 chrX 59110219 59110370 -117863770 + L1MA4 LINE L1 6117 6289 -11 312 186 0 43 chrX 59110374 59110444 -117863696 - MER20 DNA MER1_type -152 67 1 222 283 0 0 chrX 59110759 59110812 -117863328 + MIR SINE MIR 98 150 -58 439 331 145 47 chrX 59110858 59111497 -117862643 - L2 LINE L2 -5 3267 2572 187 294 176 0 chrX 59111566 59111651 -117862489 - MIR SINE MIR -1 261 162 199 402 9 9 chrX 59112228 59112340 -117861800 + L2 LINE L2 2750 2861 -453 1537 159 57 14 chrX 59112383 59112666 -117861474 + AluSx SINE Alu 1 295 -17 2489 234 84 46 chrX 59112917 59113381 -117860759 - L1MDa LINE L1 -2906 3634 3189 2170 97 7 17 chrX 59113381 59113680 -117860460 + AluSx SINE Alu 1 296 -16 2489 234 84 46 chrX 59113680 59113984 -117860156 - L1MDa LINE L1 -3351 3189 2898 2174 110 3 7 chrX 59113984 59114284 -117859856 - AluSq SINE Alu -14 299 1 2489 234 84 46 chrX 59114284 59114476 -117859664 - L1MDa LINE L1 -3642 2898 2715 2236 104 3 19 chrX 59114476 59114792 -117859348 - AluSq SINE Alu -2 311 1 2489 234 84 46 chrX 59114792 59114982 -117859158 - L1MDa LINE L1 -3825 2715 2450 23 54 0 0 chrX 59115490 59115527 -117858613 + AT_rich Low_complexity Low_complexity 1 37 0 1850 164 0 13 chrX 59115591 59115896 -117858244 + AluJb SINE Alu 1 301 -11 273 244 73 0 chrX 59115898 59115980 -117858160 - HAL1b LINE L1 -40 1308 1221 287 174 250 23 chrX 59116074 59116215 -117857925 + L1ME3 LINE L1 5975 6162 -2 331 246 27 0 chrX 59116264 59116374 -117857766 - HAL1b LINE L1 -250 1098 986 47 44 0 0 chrX 59116421 59116489 -117857651 + AT_rich Low_complexity Low_complexity 1 68 0 198 115 58 0 chrX 59116496 59116548 -117857592 + (TA)n Simple_repeat Simple_repeat 1 55 0 703 300 31 0 chrX 59116642 59116899 -117857241 - HAL1b LINE L1 -579 769 505 302 252 56 49 chrX 59116947 59117090 -117857050 + L1MEd LINE L1 41 184 -5935 228 269 86 11 chrX 59117198 59117291 -117856849 - L1MC/D LINE L1 -2264 5544 5445 1523 158 96 11 chrX 59117452 59117724 -117856416 - AluJb SINE Alu -17 295 1 26 88 0 0 chrX 59117784 59117852 -117856288 + AT_rich Low_complexity Low_complexity 1 68 0 2436 76 7 0 chrX 59117981 59118284 -117855856 + AluSp SINE Alu 1 305 -8 26 74 0 0 chrX 59118339 59118393 -117855747 + AT_rich Low_complexity Low_complexity 1 54 0 1750 262 85 7 chrX 59118447 59119203 -117854937 + L1MB8 LINE L1 2345 3159 -2987 1714 135 0 8 chrX 59119278 59119523 -117854617 + AluSx SINE Alu 1 243 -69 577 128 0 11 chrX 59119523 59119617 -117854523 + AluSg/x SINE Alu 209 301 -8 1982 127 7 26 chrX 59119657 59119965 -117854175 + AluSx SINE Alu 1 302 -10 1213 93 0 0 chrX 59119966 59120127 -117854013 + AluSq SINE Alu 139 299 -14 2639 218 51 108 chrX 59120158 59120304 -117853836 + L1MB8 LINE L1 3451 3604 -2542 2093 104 0 14 chrX 59120304 59120593 -117853547 + AluSx SINE Alu 1 306 0 190 0 0 0 chrX 59120593 59120614 -117853526 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 2639 218 51 108 chrX 59120614 59120787 -117853353 + L1MB8 LINE L1 3604 3785 -2361 2293 160 23 19 chrX 59120787 59121218 -117852922 - L1PA15 LINE L1 0 6165 5733 2639 218 51 108 chrX 59121218 59121643 -117852497 + L1MB8 LINE L1 3785 4233 -1913 1831 132 28 21 chrX 59121643 59121931 -117852209 - AluJb SINE Alu -17 295 6 2639 218 51 108 chrX 59121931 59122584 -117851556 + L1MB8 LINE L1 4233 4771 -1375 2360 200 89 23 chrX 59122607 59123504 -117850636 + L1MB8 LINE L1 5124 6074 -104 1685 244 71 58 chrX 59123680 59123742 -117850398 + L1MDa LINE L1 1405 1465 -5075 2492 71 0 3 chrX 59123742 59124052 -117850088 + AluY SINE Alu 1 309 -2 1685 244 71 58 chrX 59124052 59124905 -117849235 + L1MDa LINE L1 1465 2332 -4208 2065 131 0 16 chrX 59124938 59125243 -117848897 + AluSx SINE Alu 3 302 -10 2312 97 0 3 chrX 59125268 59125577 -117848563 + AluSq SINE Alu 3 310 -3 471 305 49 21 chrX 59125712 59125997 -117848143 + L1MCc LINE L1 101 393 -6030 2279 63 4 0 chrX 59126114 59126385 -117847755 - AluSp SINE Alu -37 276 5 749 255 85 63 chrX 59126621 59127162 -117846978 + L1MCc LINE L1 827 1454 -4968 344 243 129 0 chrX 59127162 59127370 -117846770 - L1M4 LINE L1 -1839 4307 4037 * 1687 219 14 11 chrX 59127368 59127737 -117846403 + L1MC3 LINE L1 6289 6658 -1127 2119 102 23 13 chrX 59127768 59128071 -117846069 + AluSq SINE Alu 1 306 -7 1276 233 46 22 chrX 59128078 59128295 -117845845 + L1MB8 LINE L1 4319 4529 -1617 2184 121 0 7 chrX 59128295 59128600 -117845540 + AluSg SINE Alu 1 303 -7 1276 233 46 22 chrX 59128600 59128794 -117845346 + L1MB8 LINE L1 4529 4740 -1406 * 2455 245 66 11 chrX 59128785 59129569 -117844571 + L1MB8 LINE L1 5315 6141 -37 4368 222 53 17 chrX 59129697 59130671 -117843469 + L1MA7 LINE L1 2996 3934 -3152 2543 66 0 0 chrX 59130671 59130973 -117843167 + AluSq SINE Alu 1 302 -11 4368 222 53 17 chrX 59130973 59132790 -117841350 + L1MA7 LINE L1 3934 7057 -29 512 245 36 46 chrX 59132820 59132909 -117841231 + L1M4 LINE L1 3690 3778 -2368 2403 54 7 10 chrX 59132909 59133205 -117840935 + AluY SINE Alu 1 295 -16 512 245 36 46 chrX 59133205 59133311 -117840829 + L1M4 LINE L1 3778 3883 -2263 2296 76 14 0 chrX 59183517 59183808 -117790332 - AluSx SINE Alu -14 298 4 598 302 11 5 chrX 59184322 59184511 -117789629 - MIR SINE MIR -15 247 58 360 289 48 0 chrX 59184651 59184755 -117789385 + MIR SINE MIR 32 140 -68 2386 117 3 9 chrX 59184896 59185237 -117788903 + MER1B DNA MER1_type 1 339 0 1904 108 104 0 chrX 59185319 59185588 -117788552 + AluSx SINE Alu 4 300 -12 188 316 61 31 chrX 59185864 59185962 -117788178 + L2 LINE L2 2717 2817 -497 210 71 0 0 chrX 59185970 59185998 -117788142 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 235 290 108 11 chrX 59185998 59186091 -117788049 - L2 LINE L2 -18 3254 3153 398 224 159 0 chrX 59186354 59186461 -117787679 - L2 LINE L2 -3 3310 3187 400 313 11 17 chrX 59186925 59187101 -117787039 + MER5B DNA MER1_type 1 175 -3 217 192 19 19 chrX 59187416 59187468 -117786672 + L3 LINE CR1 1524 1575 -2 235 273 0 0 chrX 59188265 59188320 -117785820 - L2 LINE L2 -4 3309 3255 235 309 44 0 chrX 59188479 59188547 -117785593 + L2 LINE L2 3202 3272 0 346 258 129 16 chrX 59188568 59188692 -117785448 + MIR SINE MIR 117 254 -8 462 245 47 0 chrX 59188781 59188887 -117785253 - MIR3 SINE MIR -13 195 85 359 277 196 0 chrX 59188976 59189088 -117785052 - MIR SINE MIR -120 142 9 238 133 22 0 chrX 59189137 59189182 -117784958 + L2 LINE L2 3180 3225 -88 238 214 36 0 chrX 59189202 59189258 -117784882 - L2 LINE L2 0 3313 3256 6964 60 11 76 chrX 59189654 59191642 -117782498 + SVA Other Other 21 1439 0 550 174 43 22 chrX 59191646 59191784 -117782356 - L1M4 LINE L1 -969 5177 5037 1775 263 65 1 chrX 59191886 59192582 -117781558 - L1 LINE L1 -2988 3158 2395 233 300 70 10 chrX 59192754 59192854 -117781286 - MIR SINE MIR -87 121 16 2006 156 0 13 chrX 59193813 59193990 -117780150 - AluJb SINE Alu -2 310 137 2332 103 0 3 chrX 59193990 59194292 -117779848 - AluSx SINE Alu -11 301 1 2006 156 0 13 chrX 59194292 59194428 -117779712 - AluJb SINE Alu -175 137 1 5026 92 10 9 chrX 59194429 59195128 -117779012 + L1PA13 LINE L1 5464 6163 0 567 215 54 13 chrX 59195231 59195407 -117778733 + L1M4 LINE L1 3325 3513 -2633 2278 68 0 4 chrX 59197548 59198001 -117776139 + AluY SINE Alu 2 453 0 2022 183 19 29 chrX 59199137 59199315 -117774825 + L1M4 LINE L1 3527 3705 -2441 2039 100 4 4 chrX 59199315 59199621 -117774519 + AluSg SINE Alu 1 306 0 2022 183 19 29 chrX 59199621 59199857 -117774283 + L1M4 LINE L1 3705 3938 -2208 1416 159 63 7 chrX 59199860 59200130 -117774010 + L1MC1 LINE L1 6044 6328 -5 1815 204 46 85 chrX 59200371 59201179 -117772961 + L1MA9 LINE L1 1888 6676 -30 294 198 40 50 chrX 59201185 59201286 -117772854 + L1MDa LINE L1 1877 1976 -4566 2162 172 48 0 chrX 59201290 59201662 -117772478 + MLT1B LTR MaLR 1 390 0 1194 223 50 16 chrX 59201671 59202053 -117772087 + L1MDa LINE L1 2082 2476 -4066 206 77 26 26 chrX 59202073 59202112 -117772028 + (TA)n Simple_repeat Simple_repeat 1 39 0 1886 190 10 25 chrX 59202121 59202515 -117771625 - MLT1B LTR MaLR -2 388 1 932 186 16 46 chrX 59202535 59202729 -117771411 + AluJo SINE Alu 3 190 -122 3467 248 38 67 chrX 59202743 59204229 -117769911 + L1ME2 LINE L1 2041 3457 -2925 836 138 0 36 chrX 59204229 59204367 -117769773 + FLAM_C SINE Alu 1 133 0 3467 248 38 67 chrX 59204367 59204662 -117769478 + L1ME2 LINE L1 3457 3759 -2623 3399 135 7 4 chrX 59204664 59204679 -117769461 + L1M1 LINE L1 12 25 -7540 2202 112 3 0 chrX 59204679 59204966 -117769174 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 59204966 59204989 -117769151 + (GGA)n Simple_repeat Simple_repeat 3 25 0 3399 135 7 4 chrX 59204989 59205876 -117768264 + L1M1 LINE L1 24 1044 -6521 2722 96 43 19 chrX 59205876 59206294 -117767846 - MSTA LTR MaLR 0 428 1 255 128 0 21 chrX 59206294 59206341 -117767799 - MSTA-int LTR MaLR 0 1651 1606 * 1405 203 114 52 chrX 59206336 59206774 -117767366 + L1ME3A LINE L1 5672 6136 -34 735 209 39 61 chrX 59206801 59207031 -117767109 + L1ME2 LINE L1 5101 5325 -1057 461 32 16 0 chrX 59207033 59207096 -117767044 + (TTTTA)n Simple_repeat Simple_repeat 5 68 0 836 141 16 0 chrX 59207097 59207218 -117766922 - FLAM_C SINE Alu -20 123 1 347 206 65 9 chrX 59207218 59207325 -117766815 + L1ME2 LINE L1 5319 5431 -951 231 156 172 0 chrX 59207324 59207388 -117766752 - L1M4 LINE L1 -849 5297 5223 * 2183 101 3 7 chrX 59207458 59207755 -117766385 - AluSp SINE Alu -17 296 1 22 0 0 0 chrX 59207759 59207781 -117766359 + AT_rich Low_complexity Low_complexity 1 22 0 3208 163 147 28 chrX 59207785 59208623 -117765517 + L1ME2 LINE L1 5431 6368 -32 937 108 0 0 chrX 59208623 59208743 -117765397 + AluSx SINE Alu 1 120 -192 683 112 0 0 chrX 59208844 59208942 -117765198 - L1M4 LINE L1 -1135 5011 4914 276 48 24 24 chrX 59208942 59208984 -117765156 - MER39B LTR ERV1 -611 42 1 497 273 40 10 chrX 59209017 59209215 -117764925 - L2 LINE L2 0 3313 3110 1050 131 23 34 chrX 59209857 59209882 -117764258 + AluSx SINE Alu 113 137 -175 2348 95 0 10 chrX 59209882 59210187 -117763953 + AluSp SINE Alu 1 302 -11 1050 131 23 34 chrX 59210187 59210337 -117763803 + AluSx SINE Alu 137 286 -26 2236 95 0 0 chrX 59210353 59210683 -117763457 + AluY SINE Alu 1 330 0 2916 126 18 17 chrX 59210683 59211274 -117762866 - L1P4 LINE L1 -693 5468 4873 26 0 0 0 chrX 59211274 59211300 -117762840 + AT_rich Low_complexity Low_complexity 1 26 0 1146 165 67 0 chrX 59211300 59211494 -117762646 - AluJb SINE Alu -21 291 85 6007 153 4 30 chrX 59211494 59211737 -117762403 - L1P4 LINE L1 -1258 4888 4640 2315 107 0 0 chrX 59211737 59212037 -117762103 - AluSq SINE Alu -9 304 5 6007 153 4 30 chrX 59212037 59212857 -117761283 - L1P4 LINE L1 -1506 4640 3853 1924 108 0 4 chrX 59212857 59213144 -117760996 - AluSx SINE Alu 0 322 37 1867 231 24 45 chrX 59213145 59213696 -117760444 - L1M4 LINE L1 -3417 2729 2191 2179 139 56 19 chrX 59213836 59214210 -117759930 + LTR51 LTR ERV1 284 671 0 2024 160 0 0 chrX 59214279 59214585 -117759555 + AluSx SINE Alu 5 310 -2 812 215 188 55 chrX 59214686 59214979 -117759161 - MER31B LTR ERV1 -134 332 1 3180 156 43 84 chrX 59215338 59216062 -117758078 - LTR8A LTR ERV1 0 727 34 1341 159 12 28 chrX 59216814 59217088 -117757052 + LTR1 LTR ERV1 46 258 -527 * 1597 186 60 12 chrX 59217058 59217392 -117756748 + LTR1 LTR ERV1 203 552 -233 375 23 0 0 chrX 59217733 59217777 -117756363 + (TG)n Simple_repeat Simple_repeat 2 45 0 197 309 37 25 chrX 59218259 59218340 -117755800 + L3b LINE CR1 1371 1452 -131 * 407 276 69 0 chrX 59218339 59218484 -117755656 - MIR3 SINE MIR -2 206 52 494 261 24 20 chrX 59219504 59219748 -117754392 + L1MC5 LINE L1 7606 7913 -48 292 320 67 20 chrX 59221594 59221744 -117752396 - L3 LINE CR1 -89 1488 1332 553 230 20 87 chrX 59222587 59222920 -117751220 - L1MC5 LINE L1 -48 7913 7540 449 257 51 47 chrX 59223854 59224023 -117750117 + MIR3 SINE MIR 32 206 -2 216 309 37 25 chrX 59224022 59224103 -117750037 - L3b LINE CR1 -131 1452 1371 * 1641 167 69 38 chrX 59224965 59225569 -117748571 - LTR1 LTR ERV1 -233 552 31 3219 167 61 81 chrX 59226298 59227040 -117747100 + LTR8A LTR ERV1 1 727 0 2326 100 0 6 chrX 59227185 59227496 -117746644 + AluSg SINE Alu 1 309 -1 186 71 0 0 chrX 59228372 59228400 -117745740 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2152 98 0 3 chrX 59228404 59228689 -117745451 - AluSx SINE Alu -28 284 1 247 289 171 0 chrX 59229032 59229108 -117745032 + MIR SINE MIR 35 123 -85 188 200 0 0 chrX 59229349 59229384 -117744756 + MIR3 SINE MIR 125 159 -49 1758 186 3 0 chrX 59229520 59229811 -117744329 - 7SLRNA srpRNA srpRNA -28 292 1 7030 175 77 18 chrX 59229816 59231935 -117742205 - L1MCa LINE L1 -3991 2435 86 2109 100 13 10 chrX 59231935 59232235 -117741905 - AluSq SINE Alu -12 301 1 7030 175 77 18 chrX 59232235 59232310 -117741830 - L1MCa LINE L1 -6340 86 17 2114 137 3 6 chrX 59232313 59232626 -117741514 - AluSx SINE Alu 0 312 1 2637 213 21 51 chrX 59232626 59233213 -117740927 - L1M4c LINE L1 -4728 1918 1315 2165 132 0 0 chrX 59233213 59233509 -117740631 - AluSx SINE Alu -16 296 1 1965 171 0 7 chrX 59233513 59233812 -117740328 - AluJb SINE Alu -15 297 1 2637 213 21 51 chrX 59233812 59233990 -117740150 - L1M4c LINE L1 -5334 1312 1171 2283 294 88 32 chrX 59234585 59234918 -117739222 - L1M4c LINE L1 -5364 1178 865 6330 94 29 2 chrX 59234918 59236176 -117737964 + L1PB2 LINE L1 4869 6149 -2 2283 294 88 32 chrX 59236176 59236950 -117737190 - L1M4c LINE L1 -5677 865 9 223 231 19 0 chrX 59237830 59237882 -117736258 - MIR3 SINE MIR -6 202 150 270 0 0 0 chrX 59237911 59237941 -117736199 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 360 0 0 0 chrX 59237940 59237980 -117736160 + (GA)n Simple_repeat Simple_repeat 1 40 0 858 143 7 7 chrX 59237980 59238120 -117736020 - AluJb SINE Alu -34 278 139 1133 146 0 6 chrX 59238156 59238327 -117735813 + AluSg/x SINE Alu 131 300 -12 351 227 30 45 chrX 59238396 59238470 -117735670 + MER113 DNA MER1_type? 1 74 -447 3949 97 51 3 chrX 59238470 59239038 -117735102 - LTR49 LTR ERV1 0 595 1 351 227 30 45 chrX 59239038 59239095 -117735045 + MER113 DNA MER1_type? 74 130 -391 444 242 17 42 chrX 59239298 59239418 -117734722 - MIR SINE MIR -62 146 30 209 156 0 22 chrX 59239485 59239530 -117734610 + GA-rich Low_complexity Low_complexity 1 44 0 2348 102 0 0 chrX 59240195 59240499 -117733641 - AluSx SINE Alu -6 306 3 414 312 18 46 chrX 59241065 59241243 -117732897 + MIR SINE MIR 17 188 -68 434 208 198 10 chrX 59241437 59241538 -117732602 - L2 LINE L2 -2 3311 3192 2413 74 3 3 chrX 59241772 59242070 -117732070 - AluSp SINE Alu -15 298 1 309 257 29 93 chrX 59242070 59242210 -117731930 - L2 LINE L2 -5 3308 3178 2536 60 0 0 chrX 59242349 59242647 -117731493 - AluY SINE Alu -11 300 3 3068 157 26 16 chrX 59242673 59243579 -117730561 + L1M1 LINE L1 3301 4213 -3352 225 0 0 0 chrX 59243938 59243963 -117730177 + (A)n Simple_repeat Simple_repeat 1 25 0 9641 167 22 25 chrX 59244398 59246318 -117727822 + L1M1 LINE L1 4173 6086 -1479 283 299 109 35 chrX 59246355 59246529 -117727611 + MIR SINE MIR 65 251 -11 971 151 0 0 chrX 59247280 59247426 -117726714 - FRAM SINE Alu -31 145 1 255 157 0 0 chrX 59248984 59249035 -117725105 + CT-rich Low_complexity Low_complexity 2 52 0 1812 142 13 48 chrX 59249362 59249673 -117724467 + AluSx SINE Alu 5 304 -8 191 225 0 0 chrX 59249761 59249801 -117724339 + MIR SINE MIR 223 262 0 939 97 19 65 chrX 59251094 59251249 -117722891 - MSTD LTR MaLR 0 396 249 286 134 45 60 chrX 59251239 59251306 -117722834 - MSTD LTR MaLR -362 66 1 * 13210 196 44 24 chrX 59251449 59254097 -117720043 + ERVL LTR ERVL 556 3344 -2420 1527 177 30 26 chrX 59254097 59254368 -117719772 - AluJo SINE Alu -30 282 11 13210 196 44 24 chrX 59254368 59254447 -117719693 + ERVL LTR ERVL 3344 3420 -2344 1419 133 32 124 chrX 59256117 59256469 -117717671 - MLT2D LTR ERVL 0 414 85 7156 129 29 45 chrX 59256469 59257172 -117716968 - L1MA8 LINE L1 -7 7244 6532 1576 214 0 4 chrX 59257172 59257448 -117716692 - AluJo SINE Alu -37 275 1 7156 129 29 45 chrX 59257448 59258981 -117715159 - L1MA8 LINE L1 -719 6532 5044 1964 65 108 14 chrX 59259606 59259885 -117714255 - AluY SINE Alu -6 305 1 5102 156 48 29 chrX 59260233 59260628 -117713512 - L1MA8 LINE L1 -2047 5059 4673 1716 181 19 10 chrX 59260628 59260937 -117713203 - AluJb SINE Alu 0 312 1 5102 156 48 29 chrX 59260937 59261391 -117712749 - L1MA8 LINE L1 -2433 4673 4229 2354 94 3 0 chrX 59261391 59261689 -117712451 + AluSp SINE Alu 1 299 -14 5102 156 48 29 chrX 59261689 59261935 -117712205 - L1MA8 LINE L1 -2877 4229 3939 6046 55 0 0 chrX 59261935 59262629 -117711511 + L1PA6 LINE L1 5461 6154 0 6734 169 102 154 chrX 59262633 59262649 -117711491 - L1MA8 LINE L1 -3924 3182 3167 1414 187 53 20 chrX 59262649 59262949 -117711191 - AluJo SINE Alu 0 312 3 6734 169 102 154 chrX 59262949 59263146 -117710994 - L1MA8 LINE L1 -3939 3167 2961 2315 91 0 3 chrX 59263146 59263442 -117710698 - AluSx SINE Alu -17 295 1 6734 169 102 154 chrX 59263442 59264281 -117709859 - L1MA8 LINE L1 -4145 2961 2080 230 158 0 0 chrX 59264281 59264319 -117709821 + 5S rRNA rRNA 2 39 -82 6734 169 102 154 chrX 59264319 59266887 -117707253 - L1MA8 LINE L1 -5026 2080 1 646 133 0 112 chrX 59266893 59267036 -117707104 - MLT2D LTR ERVL -287 127 1 2520 58 0 0 chrX 59267132 59267427 -117706713 + AluY SINE Alu 1 295 -16 28 29 0 0 chrX 59267643 59267678 -117706462 + AT_rich Low_complexity Low_complexity 1 35 0 1891 73 0 4 chrX 59267678 59267923 -117706217 - AluY SINE Alu -2 309 66 1596 209 3 7 chrX 59268989 59269285 -117704855 - AluJb SINE Alu -17 295 1 1990 75 97 18 chrX 59269295 59269574 -117704566 - AluSg1 SINE Alu -8 301 1 263 302 21 31 chrX 59270251 59270347 -117703793 - HERVL74 LTR ERVL -1560 3925 3831 1973 152 105 11 chrX 59270994 59271356 -117702784 + MSTD LTR MaLR 1 396 0 501 343 34 40 chrX 59271772 59272342 -117701798 - HERVL74 LTR ERVL -1577 2057 1409 2032 159 0 0 chrX 59272752 59273053 -117701087 + AluJb SINE Alu 1 301 -11 2128 113 3 3 chrX 59273059 59273351 -117700789 + AluSx SINE Alu 1 292 -20 2557 75 0 0 chrX 59273351 59273658 -117700482 + AluSc SINE Alu 1 307 -2 2075 137 19 3 chrX 59274889 59275196 -117698944 + AluSx SINE Alu 1 312 0 2603 53 0 0 chrX 59275201 59275503 -117698637 + AluY SINE Alu 5 306 -5 1830 176 79 76 chrX 59276233 59276485 -117697655 - LTR55 LTR ERV -17 531 281 2351 132 91 5 chrX 59276485 59276879 -117697261 - MSTA LTR MaLR 0 428 1 1830 176 79 76 chrX 59276879 59277155 -117696985 - LTR55 LTR ERV -267 281 1 1912 219 13 41 chrX 59277764 59278226 -117695914 - LTR2 LTR ERV1 0 449 1 9783 130 18 64 chrX 59279456 59279510 -117694630 + L1M4c LINE L1 5 60 -6324 2377 84 0 3 chrX 59279510 59279808 -117694332 + AluY SINE Alu 1 297 -14 9783 130 18 64 chrX 59279808 59280806 -117693334 + L1M4c LINE L1 60 1102 -5282 2473 96 0 10 chrX 59280806 59281120 -117693020 + AluSp SINE Alu 1 311 -2 9783 130 18 64 chrX 59281120 59281511 -117692629 + L1M4c LINE L1 1102 1509 -4875 1787 189 0 10 chrX 59281511 59281802 -117692338 + AluJo SINE Alu 1 288 -24 9783 130 18 64 chrX 59281802 59282077 -117692063 + L1M4c LINE L1 1509 1640 -4744 2475 83 0 0 chrX 59282077 59282379 -117691761 + AluSg SINE Alu 1 302 -8 9783 130 18 64 chrX 59282379 59282476 -117691664 + L1M4c LINE L1 1640 1740 -4644 3309 113 44 18 chrX 59282473 59282606 -117691534 + L1M2 LINE L1 5163 5291 -1009 * 207 0 0 0 chrX 59282606 59282629 -117691511 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 3309 113 44 18 chrX 59282629 59283119 -117691021 + L1M2 LINE L1 5291 5797 -503 1418 116 5 10 chrX 59283120 59283318 -117690822 + AluSg/x SINE Alu 102 298 -14 2134 187 27 35 chrX 59283321 59283473 -117690667 + L1 LINE L1 4382 4534 -1612 1754 166 28 3 chrX 59283473 59283763 -117690377 - AluJo SINE Alu -14 298 2 2134 187 27 35 chrX 59283763 59284091 -117690049 + L1 LINE L1 4534 4858 -1288 9551 143 39 53 chrX 59284155 59285002 -117689138 + MER31B-int LTR ERV1 292 1149 -3787 2426 78 3 0 chrX 59285002 59285297 -117688843 - AluSq SINE Alu -17 296 1 9551 143 39 53 chrX 59285297 59285523 -117688617 + MER31B-int LTR ERV1 1149 1377 -3559 1986 148 0 3 chrX 59285523 59285820 -117688320 + AluJo SINE Alu 1 296 -16 2301 92 0 13 chrX 59285823 59286138 -117688002 + AluY SINE Alu 1 311 0 9551 143 39 53 chrX 59286138 59286756 -117687384 + MER31B-int LTR ERV1 1379 2004 -2932 2557 61 0 0 chrX 59286756 59287051 -117687089 - AluSc SINE Alu -14 295 1 9551 143 39 53 chrX 59287051 59287800 -117686340 + MER31B-int LTR ERV1 2004 4209 -727 359 145 193 12 chrX 59287823 59287906 -117686234 + LTR37A LTR ERV1 4 101 -325 1278 213 71 76 chrX 59288149 59288404 -117685736 + MER31B-int LTR ERV1 4482 4736 -200 2179 118 3 3 chrX 59288404 59288717 -117685423 - AluSq SINE Alu 0 313 1 1278 213 71 76 chrX 59288717 59288897 -117685243 + MER31B-int LTR ERV1 4736 4915 -21 1382 174 110 82 chrX 59288898 59289176 -117684964 + MER31B LTR ERV1 1 298 -168 2263 91 0 3 chrX 59289176 59289462 -117684678 + AluSg SINE Alu 8 292 -18 1382 174 110 82 chrX 59289462 59289636 -117684504 + MER31B LTR ERV1 298 466 0 255 263 60 60 chrX 59289701 59289834 -117684306 - L1ME LINE L1 -293 5828 5696 545 122 0 0 chrX 59289834 59289916 -117684224 - AluSx SINE Alu -7 305 224 1209 116 0 0 chrX 59289916 59290071 -117684069 - AluSx SINE Alu -157 155 1 544 263 84 11 chrX 59290078 59290257 -117683883 - L1ME LINE L1 -422 5699 5508 385 290 119 23 chrX 59290653 59290956 -117683184 - L1MC4a LINE L1 -1641 6167 5836 3235 170 38 35 chrX 59290957 59291360 -117682780 - MER39 LTR ERV1 0 707 299 1621 136 66 26 chrX 59291360 59291481 -117682659 + AluSx SINE Alu 1 116 -190 2178 107 7 3 chrX 59291481 59291780 -117682360 + AluSx SINE Alu 1 300 -12 1621 136 66 26 chrX 59291780 59291953 -117682187 + AluSx SINE Alu 116 306 0 3235 170 38 35 chrX 59291953 59292179 -117681961 - MER39 LTR ERV1 -408 299 75 1552 92 22 4 chrX 59292206 59292434 -117681706 - L1MA3 LINE L1 0 6305 6074 1650 95 0 5 chrX 59292434 59292656 -117681484 + AluSg/x SINE Alu 80 300 -10 2023 143 3 13 chrX 59292706 59293021 -117681119 - AluSq SINE Alu -1 312 1 842 141 0 0 chrX 59293031 59293166 -117680974 - L1 LINE L1 -1098 5048 4914 276 48 24 24 chrX 59293166 59293208 -117680932 - MER39B LTR ERV1 -611 42 1 470 278 40 10 chrX 59293241 59293439 -117680701 - L2 LINE L2 0 3313 3110 2098 81 33 4 chrX 59294106 59294377 -117679763 + AluSg SINE Alu 1 279 -31 214 180 0 20 chrX 59294383 59294433 -117679707 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 234 269 13 39 chrX 59294438 59294516 -117679624 + L3 LINE CR1 1409 1484 -93 265 253 51 25 chrX 59296327 59296406 -117677734 - L1MC5 LINE L1 -48 7913 7833 537 215 12 110 chrX 59296414 59296660 -117677480 - L1MC5 LINE L1 -200 7761 7540 407 257 51 47 chrX 59297594 59297763 -117676377 + MIR3 SINE MIR 32 206 -2 192 309 37 25 chrX 59297762 59297843 -117676297 - L3b LINE CR1 -131 1452 1371 * 1676 165 69 38 chrX 59298705 59299309 -117674831 - LTR1 LTR ERV1 -233 552 31 3013 169 61 81 chrX 59300038 59300780 -117673360 + LTR8A LTR ERV1 1 727 0 2281 102 0 7 chrX 59300925 59301230 -117672910 + AluSg SINE Alu 1 303 -7 496 244 15 30 chrX 59301458 59301589 -117672551 + MER31B LTR ERV1 1 129 -337 1237 159 19 104 chrX 59301589 59301921 -117672219 - AluSq SINE Alu 0 306 1 2171 127 0 3 chrX 59301934 59302226 -117671914 - AluSg SINE Alu -19 291 1 910 101 0 88 chrX 59302227 59302254 -117671886 - AluSq/x SINE Alu -177 136 108 2289 107 0 28 chrX 59302254 59302572 -117671568 + AluSc SINE Alu 1 309 0 910 101 0 88 chrX 59302572 59302692 -117671448 - AluSq/x SINE Alu -205 108 2 648 167 61 116 chrX 59302723 59302921 -117671219 + MER31B LTR ERV1 193 379 -87 2464 80 3 0 chrX 59302995 59303307 -117670833 - AluSq SINE Alu 0 313 1 285 146 0 0 chrX 59303309 59303357 -117670783 + (TCTCC)n Simple_repeat Simple_repeat 5 52 0 2237 86 7 0 chrX 59303361 59303640 -117670500 - AluSp SINE Alu -32 281 1 1888 176 0 0 chrX 59303641 59303937 -117670203 - AluSx SINE Alu -12 300 5 3798 142 54 11 chrX 59304005 59304648 -117669492 - LTR51 LTR ERV1 0 671 1 275 286 25 17 chrX 59304777 59304896 -117669244 + MER31B-int LTR ERV1 54 173 -4763 2036 131 0 10 chrX 59305095 59305392 -117668748 - AluJb SINE Alu -18 294 1 2478 85 3 0 chrX 59305589 59305896 -117668244 + AluSp SINE Alu 1 308 -5 1007 202 0 0 chrX 59307736 59307909 -117666231 + FAM SINE Alu 1 49 0 2865 231 55 48 chrX 59308701 59309470 -117664670 - L1M4 LINE L1 -1283 4863 4084 2335 116 3 0 chrX 59309470 59309781 -117664359 - AluSx SINE Alu 0 312 1 2865 231 55 48 chrX 59309781 59310036 -117664104 - L1M4 LINE L1 -2062 4084 3832 2163 178 27 49 chrX 59310038 59310104 -117664036 - L1MDa LINE L1 -6080 460 394 2295 87 0 3 chrX 59310104 59310391 -117663749 - AluSg SINE Alu -24 286 1 2163 178 27 49 chrX 59310391 59310675 -117663465 - L1MDa LINE L1 -6146 394 120 2388 77 0 17 chrX 59310675 59310973 -117663167 - AluSg SINE Alu -17 293 1 2163 178 27 49 chrX 59310973 59311071 -117663069 - L1MDa LINE L1 -6420 120 21 2358 89 3 0 chrX 59311423 59311716 -117662424 - AluSp SINE Alu -19 294 1 449 282 0 0 chrX 59311716 59311847 -117662293 - Charlie8 DNA MER1_type -2275 142 12 2351 112 6 0 chrX 59312336 59312685 -117661455 + L1P5 LINE L1 5435 5785 -371 2589 52 3 7 chrX 59312686 59312996 -117661144 + AluY SINE Alu 1 309 -2 1954 159 0 7 chrX 59313070 59313371 -117660769 + AluJb SINE Alu 1 299 -13 2333 87 23 0 chrX 59313691 59313990 -117660150 + AluSx SINE Alu 1 306 -6 1973 142 14 0 chrX 59314138 59314419 -117659721 + AluSx SINE Alu 1 285 -27 1878 137 10 26 chrX 59314490 59314797 -117659343 - AluJb SINE Alu -10 302 1 198 194 85 133 chrX 59315046 59315211 -117658929 + L2 LINE L2 3012 3168 -145 2067 78 74 7 chrX 59316443 59316727 -117657413 + AluSc SINE Alu 1 303 -6 515 167 98 20 chrX 59316890 59316992 -117657148 - FLAM_A SINE Alu -10 132 23 812 264 33 16 chrX 59317012 59317319 -117656821 - HAL1 LINE L1 -195 2312 2001 3845 200 27 29 chrX 59317340 59317595 -117656545 - L1M4 LINE L1 -1346 4800 4546 2491 82 0 0 chrX 59317595 59317898 -117656242 + AluSg SINE Alu 1 303 -7 3845 200 27 29 chrX 59317898 59318545 -117655595 - L1M4 LINE L1 -1600 4546 3900 5846 229 72 9 chrX 59318545 59320230 -117653910 - L1M4 LINE L1 -1988 4158 2368 233 300 70 10 chrX 59320380 59320480 -117653660 - MIR SINE MIR -87 121 16 2015 154 0 13 chrX 59321439 59321616 -117652524 - AluJb SINE Alu -2 310 137 2332 103 0 3 chrX 59321616 59321918 -117652222 - AluSx SINE Alu -11 301 1 2015 154 0 13 chrX 59321918 59322052 -117652088 - AluJb SINE Alu -175 137 3 1744 196 37 82 chrX 59322353 59322389 -117651751 - MLT2C2 LTR ERVL 0 464 428 216 97 0 0 chrX 59322389 59322420 -117651720 + (TG)n Simple_repeat Simple_repeat 1 31 0 1744 196 37 82 chrX 59322420 59322869 -117651271 - MLT2C2 LTR ERVL -36 428 1 2293 105 3 0 chrX 59323091 59323387 -117650753 - AluSg SINE Alu -13 297 1 1279 88 0 6 chrX 59323884 59324055 -117650085 + AluSg SINE Alu 1 170 -140 426 20 0 0 chrX 59324055 59324104 -117650036 - AluSq/x SINE Alu -179 134 86 1207 183 115 54 chrX 59324056 59324335 -117649805 - AluJo SINE Alu -6 296 1 2134 216 2 8 chrX 59324383 59324781 -117649359 + MSTD LTR MaLR 1 396 0 1029 140 0 6 chrX 59324782 59324946 -117649194 + L1MB8 LINE L1 6014 6176 -2 1985 133 0 20 chrX 59325756 59326058 -117648082 - AluJo SINE Alu -14 298 3 22 0 0 0 chrX 59326063 59326085 -117648055 + AT_rich Low_complexity Low_complexity 1 22 0 2138 98 14 10 chrX 59328568 59328865 -117645275 - AluSx SINE Alu -14 298 1 693 292 39 27 chrX 59328888 59329145 -117644995 - MIR SINE MIR 0 262 3 641 233 27 0 chrX 59329582 59329732 -117644408 - L1ME LINE L1 -442 5679 5526 374 244 263 0 chrX 59330151 59330356 -117643784 - L1ME4a LINE L1 -81 6040 5782 314 337 129 38 chrX 59330357 59330622 -117643518 - L1ME4a LINE L1 -385 5736 5426 2016 144 3 3 chrX 59330622 59330927 -117643213 - AluJb SINE Alu -7 305 1 314 337 129 38 chrX 59330927 59331032 -117643108 - L1ME4a LINE L1 -695 5426 5332 849 128 64 0 chrX 59331204 59331329 -117642811 - FLAM_C SINE Alu 0 133 1 540 181 154 74 chrX 59332732 59332881 -117641259 + L2 LINE L2 3112 3272 0 185 152 30 0 chrX 59332886 59332919 -117641221 - L2 LINE L2 -4 3268 3235 1932 150 13 7 chrX 59333194 59333501 -117640639 - AluJo SINE Alu -3 309 1 457 257 103 29 chrX 59333519 59333655 -117640485 + MER58A DNA MER1_type 1 146 0 304 104 0 0 chrX 59333656 59333704 -117640436 - MADE1 DNA Mariner 0 80 33 294 258 31 10 chrX 59334528 59334612 -117639528 - L1MC4 LINE L1 -20 8022 7934 2297 134 20 9 chrX 59334612 59334956 -117639184 - MER7A DNA MER2_type 0 346 1 294 258 31 10 chrX 59334956 59334968 -117639172 - L1MC4 LINE L1 -108 7934 7924 453 278 104 33 chrX 59335654 59336002 -117638138 + L1ME4a LINE L1 5630 6000 -121 2379 59 14 0 chrX 59336024 59336310 -117637830 - AluSc SINE Alu -19 290 1 461 96 8 3 chrX 59337195 59337434 -117636706 + AluSq SINE Alu 1 301 -11 597 133 0 38 chrX 59338727 59338832 -117635308 - FLAM_C SINE Alu 0 143 43 238 165 21 21 chrX 59338904 59338962 -117635178 - MER5A DNA MER1_type -11 167 110 222 237 290 15 chrX 59339200 59339331 -117634809 - L2 LINE L2 -21 3292 3126 828 194 85 0 chrX 59339881 59340046 -117634094 + MER58A DNA MER1_type 46 224 0 361 255 148 27 chrX 59340543 59340729 -117633411 - MIR SINE MIR -12 250 38 195 129 0 0 chrX 59340740 59340771 -117633369 + (TC)n Simple_repeat Simple_repeat 2 32 0 823 166 0 43 chrX 59340771 59340910 -117633230 - FLAM_C SINE Alu 0 133 1 812 119 37 22 chrX 59341253 59341387 -117632753 + AluJo SINE Alu 1 136 -176 2263 79 7 7 chrX 59341388 59341680 -117632460 + AluSc SINE Alu 3 294 -15 1121 151 6 0 chrX 59342070 59342242 -117631898 - AluJb SINE Alu 0 312 140 1752 159 41 7 chrX 59342741 59343031 -117631109 - AluJb SINE Alu -12 300 1 1670 152 94 0 chrX 59343386 59343663 -117630477 + AluSg SINE Alu 1 303 -7 226 233 89 11 chrX 59343697 59343787 -117630353 - L1ME4a LINE L1 -70 6051 5955 2234 106 0 3 chrX 59343790 59344083 -117630057 - AluSg SINE Alu -14 296 5 27 62 0 0 chrX 59344093 59344141 -117629999 + AT_rich Low_complexity Low_complexity 1 48 0 1085 153 5 77 chrX 59344542 59344751 -117629389 + AluJo SINE Alu 1 194 -118 1021 182 198 0 chrX 59344967 59345154 -117628986 - MER58A DNA MER1_type 0 224 1 2252 97 0 13 chrX 59345831 59346131 -117628009 - AluSg SINE Alu -14 296 1 21 71 0 0 chrX 59346168 59346210 -117627930 + AT_rich Low_complexity Low_complexity 1 42 0 2029 147 3 6 chrX 59346210 59346522 -117627618 - AluJb SINE Alu -1 311 1 406 245 71 71 chrX 59346646 59347020 -117627120 - L1ME4a LINE L1 -269 5852 5389 23 86 0 0 chrX 59347188 59347246 -117626894 + AT_rich Low_complexity Low_complexity 1 58 0 1075 205 105 0 chrX 59347471 59347671 -117626469 - MER58A DNA MER1_type -2 222 2 1993 145 3 3 chrX 59348797 59349094 -117625046 - AluJb SINE Alu -15 297 1 234 0 0 0 chrX 59349273 59349299 -117624841 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 812 178 0 0 chrX 59349308 59349426 -117624714 - FLAM_C SINE Alu -15 118 1 1858 179 55 9 chrX 59350160 59350489 -117623651 - MER2 DNA MER2_type 0 344 1 2096 102 49 0 chrX 59350637 59350921 -117623219 - AluSp SINE Alu -15 298 1 2239 105 7 0 chrX 59351003 59351298 -117622842 - AluSx SINE Alu -15 297 1 461 209 146 0 chrX 59352072 59352182 -117621958 - MER2 DNA MER2_type -193 152 27 203 234 0 31 chrX 59352429 59352493 -117621647 + A-rich Low_complexity Low_complexity 1 62 0 1068 176 55 0 chrX 59352660 59352859 -117621281 - MER2 DNA MER2_type -135 210 1 310 200 70 78 chrX 59352859 59352973 -117621167 - MER112 DNA MER1_type -147 113 1 428 316 118 24 chrX 59352978 59353266 -117620874 + MER102b DNA MER1_type 11 325 -16 1433 140 107 67 chrX 59353524 59353824 -117620316 + AluJo SINE Alu 1 312 0 520 182 0 0 chrX 59353839 59353916 -117620224 + AluJ/FLAM SINE Alu 2 78 -234 1021 244 7 7 chrX 59353924 59354203 -117619937 + L1 LINE L1 4840 5118 -1028 2029 115 0 31 chrX 59354510 59354798 -117619342 + AluSx SINE Alu 4 282 -30 386 281 26 78 chrX 59356680 59356872 -117617268 + L2 LINE L2 560 741 -2573 2284 99 0 3 chrX 59357033 59357326 -117616814 - AluSx SINE Alu -20 292 1 608 266 15 45 chrX 59358321 59358520 -117615620 - MER117 DNA MER1_type 0 197 5 195 156 0 0 chrX 59358647 59358679 -117615461 + L2 LINE L2 3231 3262 -10 543 286 71 12 chrX 59358685 59358853 -117615287 - L2 LINE L2 0 3272 3095 217 301 192 0 chrX 59359084 59359157 -117614983 - MIR SINE MIR -128 134 48 558 294 54 11 chrX 59359513 59359734 -117614406 - MIR SINE MIR -30 232 4 261 0 0 0 chrX 59360121 59360150 -117613990 + (A)n Simple_repeat Simple_repeat 1 29 0 1809 145 94 45 chrX 59360443 59360774 -117613366 + MER7A DNA MER2_type 1 345 -1 560 289 102 93 chrX 59361042 59361385 -117612755 + L2 LINE L2 2887 3232 -40 229 368 107 47 chrX 59361476 59361710 -117612430 + L3 LINE CR1 1329 1576 -1 1830 189 0 3 chrX 59361826 59362138 -117612002 + AluJb SINE Alu 1 311 -1 240 313 12 12 chrX 59362473 59362556 -117611584 + MIR3 SINE MIR 112 194 -14 659 200 8 0 chrX 59362723 59362832 -117611308 + FLAM_C SINE Alu 2 114 -198 855 37 0 0 chrX 59362832 59362939 -117611201 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 210 213 56 32 chrX 59362984 59363081 -117611059 + MIR SINE MIR 65 207 -55 247 242 0 32 chrX 59363109 59363171 -117610969 - L3 LINE CR1 -7 1570 1511 1665 106 130 0 chrX 59363576 59363830 -117610310 - AluSx SINE Alu -5 307 21 2232 104 7 0 chrX 59363872 59364171 -117609969 - AluSx SINE Alu -11 301 1 447 251 94 20 chrX 59364629 59364832 -117609308 + L1M4 LINE L1 4489 4706 -1440 1618 251 123 55 chrX 59365139 59365263 -117608877 + L1MB7 LINE L1 1272 1386 -4996 1619 151 0 27 chrX 59365263 59365522 -117608618 + AluJb SINE Alu 40 291 -21 1618 251 123 55 chrX 59365522 59365717 -117608423 + L1MB7 LINE L1 1386 1566 -4816 2189 132 3 0 chrX 59365717 59366028 -117608112 - AluSx SINE Alu 0 312 1 1618 251 123 55 chrX 59366028 59366933 -117607207 + L1MB7 LINE L1 1566 2593 -3789 1158 144 5 41 chrX 59366949 59367144 -117606996 + AluJb SINE Alu 2 189 -123 2449 229 71 29 chrX 59367147 59367454 -117606686 + L1MB7 LINE L1 2771 3064 -3318 1720 171 7 30 chrX 59367454 59367759 -117606381 + AluJo SINE Alu 1 298 -14 2449 229 71 29 chrX 59367759 59368008 -117606132 + L1MB7 LINE L1 3064 3301 -3081 1991 146 3 3 chrX 59368008 59368309 -117605831 + AluSx SINE Alu 1 301 -11 2449 229 71 29 chrX 59368309 59368653 -117605487 + L1MB7 LINE L1 3301 3725 -2657 2237 84 3 7 chrX 59368653 59368950 -117605190 + AluSp SINE Alu 1 296 -17 2449 229 71 29 chrX 59368950 59369104 -117605036 + L1MB7 LINE L1 3725 3871 -2511 3387 217 111 14 chrX 59369149 59371217 -117602923 + L1MB7 LINE L1 4120 6396 -24 1522 162 11 29 chrX 59372614 59372892 -117601248 + AluJo SINE Alu 25 297 -15 1915 196 100 70 chrX 59373737 59374165 -117599975 + Tigger7 DNA MER2_type 1 497 -236 334 140 0 0 chrX 59374165 59374215 -117599925 + AluJ/FLAM SINE Alu 35 84 -218 1915 196 100 70 chrX 59374215 59374267 -117599873 + Tigger7 DNA MER2_type 497 546 -187 503 216 81 0 chrX 59374260 59374371 -117599769 + Tigger7 DNA MER2_type 2359 2478 -9 * 587 200 7 55 chrX 59377336 59377481 -117596659 + AluJo SINE Alu 4 141 -171 2054 125 0 10 chrX 59377615 59377911 -117596229 - AluSg SINE Alu -17 293 1 21 0 0 0 chrX 59378203 59378224 -117595916 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chrX 59378943 59378986 -117595154 + AT_rich Low_complexity Low_complexity 1 43 0 1935 166 0 0 chrX 59382874 59383170 -117590970 - 7SLRNA srpRNA srpRNA -22 298 3 195 254 127 92 chrX 59383428 59383601 -117590539 + MIR SINE MIR 81 259 -3 2110 118 0 28 chrX 59383608 59383929 -117590211 - AluSx SINE Alu 0 312 1 2117 130 0 7 chrX 59384025 59384326 -117589814 + AluSx SINE Alu 1 299 -13 330 132 0 0 chrX 59384495 59384548 -117589592 + (CA)n Simple_repeat Simple_repeat 2 54 0 1300 146 12 16 chrX 59385594 59385841 -117588299 + L1MB4 LINE L1 5758 6003 -177 570 151 7 99 chrX 59385833 59385879 -117588261 + L1MC3 LINE L1 7648 7697 -88 * 2478 57 0 0 chrX 59385879 59386177 -117587963 + AluY SINE Alu 1 298 -13 570 151 7 99 chrX 59386177 59386282 -117587858 + L1MC3 LINE L1 7697 7785 0 748 200 0 0 chrX 59387578 59387708 -117586432 + FLAM_A SINE Alu 3 132 -1 1178 149 63 127 chrX 59388330 59388646 -117585494 + AluJb SINE Alu 11 306 -6 437 88 15 0 chrX 59388648 59388716 -117585424 + L1MB3 LINE L1 6105 6173 -10 481 294 95 13 chrX 59388883 59389198 -117584942 - L1MC4a LINE L1 -358 5825 5594 367 282 55 0 chrX 59389518 59389628 -117584512 - L1MC4a LINE L1 -2203 5605 5490 325 214 107 36 chrX 59389646 59389814 -117584326 - L1MC4a LINE L1 -2375 5433 5254 61 0 0 0 chrX 59389888 59389949 -117584191 + AT_rich Low_complexity Low_complexity 1 61 0 2899 68 51 23 chrX 59390205 59390678 -117583462 + LTR21A LTR ERV1 1 486 -19 1205 152 103 42 chrX 59391023 59391286 -117582854 + AluJo SINE Alu 15 293 -19 552 219 27 139 chrX 59391714 59392015 -117582125 + MER21B LTR ERV1 1 267 -596 333 174 0 12 chrX 59392082 59392155 -117581985 + MER21B LTR ERV1 680 821 -110 2412 73 0 3 chrX 59392541 59392843 -117581297 + AluY SINE Alu 1 301 -10 1135 219 40 59 chrX 59393211 59393628 -117580512 + MER68 LTR ERV1 29 509 -53 1289 125 0 0 chrX 59394154 59394354 -117579786 + LTR9B LTR ERV1 445 644 0 468 163 31 51 chrX 59394354 59394452 -117579688 + HUERS-P3b LTR ERV1 1 96 -7322 794 96 118 7 chrX 59394455 59394591 -117579549 + HUERS-P3b LTR ERV1 409 559 -6859 13191 87 142 125 chrX 59394599 59397603 -117576537 + HUERS-P3b LTR ERV1 747 3874 -3544 * 18466 70 52 10 chrX 59397602 59400192 -117573948 + HUERS-P3b LTR ERV1 4719 7417 -1 3031 116 27 12 chrX 59400193 59400704 -117573436 + LTR9B LTR ERV1 42 560 -84 1548 156 9 78 chrX 59400902 59401235 -117572905 + AluJb SINE Alu 1 310 -2 2126 135 0 3 chrX 59401762 59402066 -117572074 + AluSx SINE Alu 1 303 -9 847 130 8 0 chrX 59402178 59402301 -117571839 - FRAM SINE Alu -16 160 37 21 36 0 0 chrX 59403075 59403103 -117571037 + AT_rich Low_complexity Low_complexity 1 28 0 1316 194 27 46 chrX 59403494 59403620 -117570520 - MER58B DNA MER1_type -2097 323 196 2448 70 3 0 chrX 59403620 59403918 -117570222 + AluSp SINE Alu 1 299 -14 1316 194 27 46 chrX 59403918 59404120 -117570020 - MER58B DNA MER1_type -2224 196 1 1012 93 22 88 chrX 59404273 59404499 -117569641 - L1MB2 LINE L1 -37 6134 5924 2098 79 61 7 chrX 59404631 59404911 -117569229 + AluSx SINE Alu 1 295 -17 27 29 0 0 chrX 59404916 59404950 -117569190 + AT_rich Low_complexity Low_complexity 1 34 0 435 276 0 17 chrX 59405316 59405432 -117568708 + MER20B DNA MER1_type 60 173 -610 2186 108 14 0 chrX 59405567 59405863 -117568277 + AluSx SINE Alu 1 300 -12 1799 158 36 13 chrX 59406155 59406459 -117567681 - AluJb SINE Alu -1 311 1 1452 140 107 67 chrX 59406477 59406777 -117567363 - AluJo SINE Alu 0 312 1 333 272 117 34 chrX 59407035 59407241 -117566899 - MER102a DNA MER1_type -16 314 92 270 161 21 97 chrX 59407350 59407442 -117566698 + MER112 DNA MER1_type 29 113 -147 986 185 55 0 chrX 59407442 59407642 -117566498 + MER2 DNA MER2_type 1 211 -134 203 234 0 31 chrX 59407808 59407872 -117566268 + T-rich Low_complexity Low_complexity 1 62 0 419 209 146 0 chrX 59408119 59408229 -117565911 + MER2 DNA MER2_type 27 152 -193 2234 112 6 10 chrX 59409001 59409313 -117564827 + AluSx SINE Alu 1 311 -1 2110 99 49 0 chrX 59409378 59409662 -117564478 + AluSp SINE Alu 1 298 -15 1702 179 55 9 chrX 59409810 59410139 -117564001 + MER2 DNA MER2_type 1 344 0 768 178 0 0 chrX 59410876 59410994 -117563146 + FLAM_C SINE Alu 1 118 -15 234 0 0 0 chrX 59411003 59411029 -117563111 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1990 159 3 3 chrX 59411208 59411517 -117562623 + AluJb SINE Alu 1 309 -3 998 204 104 0 chrX 59412630 59412831 -117561309 + MER58A DNA MER1_type 1 222 -2 23 86 0 0 chrX 59413056 59413114 -117561026 + AT_rich Low_complexity Low_complexity 1 58 0 252 279 55 61 chrX 59413282 59413447 -117560693 + L1ME4a LINE L1 5389 5552 -569 320 221 87 82 chrX 59413449 59413657 -117560483 + L1ME4a LINE L1 5644 5852 -269 2058 144 3 6 chrX 59413781 59414093 -117560047 + AluJb SINE Alu 1 311 -1 21 71 0 0 chrX 59414093 59414135 -117560005 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 0 13 chrX 59414172 59414472 -117559668 + AluSg SINE Alu 1 296 -14 21 0 0 0 chrX 59415044 59415065 -117559075 + AT_rich Low_complexity Low_complexity 1 21 0 920 187 198 0 chrX 59415149 59415336 -117558804 + MER58A DNA MER1_type 1 224 0 1095 153 5 77 chrX 59415552 59415761 -117558379 - AluJo SINE Alu -118 194 1 27 62 0 0 chrX 59416162 59416210 -117557930 + AT_rich Low_complexity Low_complexity 1 48 0 2252 102 0 3 chrX 59416220 59416513 -117557627 + AluSg SINE Alu 5 296 -14 1680 152 94 0 chrX 59416640 59416917 -117557223 - AluSg SINE Alu -7 303 1 1796 155 41 7 chrX 59417272 59417563 -117556577 + AluJb SINE Alu 1 301 -11 1130 151 6 0 chrX 59418062 59418234 -117555906 + AluJb SINE Alu 140 312 0 2224 82 7 7 chrX 59418624 59418916 -117555224 - AluSc SINE Alu -15 294 3 809 149 22 8 chrX 59418917 59419051 -117555089 - AluJo SINE Alu -176 136 1 768 166 0 43 chrX 59419394 59419533 -117554607 + FLAM_C SINE Alu 1 133 0 371 264 176 28 chrX 59419556 59419760 -117554380 + MIR SINE MIR 19 250 -12 747 194 85 0 chrX 59420257 59420422 -117553718 - MER58A DNA MER1_type 0 224 46 232 229 290 15 chrX 59420972 59421103 -117553037 + L2 LINE L2 3126 3292 -21 237 232 18 18 chrX 59421343 59421399 -117552741 + MER5A DNA MER1_type 123 178 -11 518 131 0 56 chrX 59421471 59421578 -117552562 + FLAM_C SINE Alu 43 143 0 432 121 0 0 chrX 59422871 59422937 -117551203 - AluSq SINE Alu -11 301 236 1332 87 12 0 chrX 59422937 59423110 -117551030 - AluSq SINE Alu -138 175 1 2347 60 14 0 chrX 59423997 59424281 -117549859 + AluSc SINE Alu 3 290 -19 327 273 106 34 chrX 59424303 59424651 -117549489 - L1ME4a LINE L1 -121 6000 5630 285 258 31 10 chrX 59425337 59425349 -117548791 + L1MC4 LINE L1 7924 7934 -108 2179 134 20 9 chrX 59425349 59425693 -117548447 + MER7A DNA MER2_type 1 346 0 285 258 31 10 chrX 59425693 59425777 -117548363 + L1MC4 LINE L1 7934 8022 -20 302 104 0 0 chrX 59426601 59426649 -117547491 + MADE1 DNA Mariner 33 80 0 472 250 103 29 chrX 59426650 59426786 -117547354 - MER58A DNA MER1_type 0 146 1 1940 150 13 7 chrX 59426804 59427110 -117547030 + AluJo SINE Alu 1 308 -4 488 181 154 74 chrX 59427423 59427572 -117546568 - L2 LINE L2 0 3272 3112 796 128 64 0 chrX 59428975 59429100 -117545040 + FLAM_C SINE Alu 1 133 0 2014 148 3 3 chrX 59429377 59429682 -117544458 + AluJb SINE Alu 1 305 -7 354 244 263 0 chrX 59429949 59430154 -117543986 + L1ME4a LINE L1 5782 6040 -81 624 233 27 0 chrX 59430573 59430723 -117543417 + L1ME LINE L1 5526 5679 -442 586 272 47 35 chrX 59431159 59431416 -117542724 + MIR SINE MIR 3 262 0 2169 98 14 10 chrX 59431439 59431736 -117542404 + AluSx SINE Alu 1 298 -14 22 0 0 0 chrX 59434221 59434243 -117539897 + AT_rich Low_complexity Low_complexity 1 22 0 2009 133 0 20 chrX 59434248 59434550 -117539590 + AluJo SINE Alu 3 298 -14 981 140 0 6 chrX 59435360 59435524 -117538616 - L1MB8 LINE L1 -2 6176 6014 2013 216 2 8 chrX 59435525 59435923 -117538217 - MSTD LTR MaLR 0 396 1 895 125 0 22 chrX 59435971 59436107 -117538033 + FLAM_C SINE Alu 1 133 0 2272 128 0 0 chrX 59436117 59436429 -117537711 + AluSx SINE Alu 1 312 0 2356 79 7 0 chrX 59436462 59436754 -117537386 - AluSg SINE Alu -16 294 1 2293 105 3 0 chrX 59437251 59437547 -117536593 + AluSg SINE Alu 1 297 -13 1744 196 37 82 chrX 59437769 59438218 -117535922 + MLT2C2 LTR ERVL 1 428 -36 216 97 0 0 chrX 59438218 59438249 -117535891 + (CA)n Simple_repeat Simple_repeat 1 31 0 1744 196 37 82 chrX 59438249 59438285 -117535855 + MLT2C2 LTR ERVL 428 464 0 2015 154 0 13 chrX 59438586 59438720 -117535420 + AluJb SINE Alu 3 137 -175 2332 103 0 3 chrX 59438720 59439022 -117535118 + AluSx SINE Alu 1 301 -11 2015 154 0 13 chrX 59439022 59439199 -117534941 + AluJb SINE Alu 137 310 -2 233 300 70 10 chrX 59440158 59440258 -117533882 + MIR SINE MIR 16 121 -87 5877 228 72 9 chrX 59440408 59442093 -117532047 + L1M4 LINE L1 2368 4158 -1988 3880 197 30 29 chrX 59442093 59442737 -117531403 + L1M4 LINE L1 3900 4547 -1599 2469 86 0 0 chrX 59442737 59443039 -117531101 - AluSg SINE Alu -8 302 1 3880 197 30 29 chrX 59443039 59443294 -117530846 + L1M4 LINE L1 4547 4800 -1346 812 264 33 16 chrX 59443315 59443622 -117530518 + HAL1 LINE L1 2001 2312 -195 515 167 98 20 chrX 59443642 59443744 -117530396 + FLAM_A SINE Alu 23 132 -10 2084 74 74 7 chrX 59443907 59444191 -117529949 - AluSc SINE Alu -6 303 1 198 194 85 133 chrX 59445423 59445588 -117528552 - L2 LINE L2 -145 3168 3012 1878 137 10 26 chrX 59445837 59446144 -117527996 + AluJb SINE Alu 1 302 -10 1989 139 14 0 chrX 59446215 59446496 -117527644 - AluSx SINE Alu -27 285 1 2296 94 23 0 chrX 59446644 59446943 -117527197 - AluSx SINE Alu -6 306 1 1954 159 0 7 chrX 59447263 59447564 -117526576 - AluJb SINE Alu -13 299 1 2605 51 3 6 chrX 59447640 59447952 -117526188 - AluY SINE Alu 0 311 1 2379 109 6 0 chrX 59447953 59448302 -117525838 - L1P5 LINE L1 -371 5785 5435 449 282 0 0 chrX 59448791 59448922 -117525218 + Charlie8 DNA MER1_type 12 142 -2275 2374 85 3 0 chrX 59448922 59449215 -117524925 + AluSp SINE Alu 1 294 -19 2163 178 27 49 chrX 59449567 59449665 -117524475 + L1MDa LINE L1 21 120 -6420 2393 77 0 17 chrX 59449665 59449963 -117524177 + AluSg SINE Alu 1 293 -17 2163 178 27 49 chrX 59449963 59450247 -117523893 + L1MDa LINE L1 120 394 -6146 2295 87 0 3 chrX 59450247 59450534 -117523606 + AluSg SINE Alu 1 286 -24 2163 178 27 49 chrX 59450534 59450600 -117523540 + L1MDa LINE L1 394 460 -6080 2877 232 55 46 chrX 59450602 59450857 -117523283 + L1M4 LINE L1 3832 4083 -2063 2358 113 3 0 chrX 59450857 59451168 -117522972 + AluSx SINE Alu 1 312 0 2877 232 55 46 chrX 59451168 59451935 -117522205 + L1M4 LINE L1 4083 4863 -1283 1007 202 0 0 chrX 59452727 59452900 -117521240 - FAM SINE Alu 0 49 1 2462 85 3 0 chrX 59454740 59455045 -117519095 - AluSp SINE Alu -7 306 1 2036 131 0 10 chrX 59455242 59455539 -117518601 + AluJb SINE Alu 1 294 -18 275 286 25 17 chrX 59455738 59455857 -117518283 - MER31B-int LTR ERV1 -4763 173 54 3784 143 54 11 chrX 59455986 59456629 -117517511 + LTR51 LTR ERV1 1 671 0 1888 176 0 0 chrX 59456697 59456993 -117517147 + AluSx SINE Alu 5 300 -12 2252 82 7 0 chrX 59456994 59457273 -117516867 + AluSp SINE Alu 1 281 -32 306 125 0 0 chrX 59457277 59457325 -117516815 + (GGAGA)n Simple_repeat Simple_repeat 5 52 0 2464 80 3 0 chrX 59457327 59457639 -117516501 + AluSq SINE Alu 1 313 0 648 167 61 116 chrX 59457714 59457912 -117516228 - MER31B LTR ERV1 -87 379 193 892 99 0 106 chrX 59457943 59458066 -117516074 + AluSq/x SINE Alu 2 108 -205 2289 107 0 28 chrX 59458066 59458384 -117515756 - AluSc SINE Alu 0 309 1 892 99 0 106 chrX 59458384 59458411 -117515729 + AluSq/x SINE Alu 108 136 -177 2180 126 0 3 chrX 59458412 59458705 -117515435 + AluSg SINE Alu 1 292 -18 1238 159 19 104 chrX 59458718 59459050 -117515090 + AluSq SINE Alu 1 306 0 496 244 15 30 chrX 59459050 59459181 -117514959 - MER31B LTR ERV1 -337 129 1 2289 101 0 7 chrX 59459410 59459716 -117514424 - AluSg SINE Alu -6 304 1 3013 169 61 81 chrX 59459861 59460603 -117513537 - LTR8A LTR ERV1 0 727 1 1249 183 93 16 chrX 59461332 59461643 -117512497 + LTR1 LTR ERV1 31 365 -420 * 1688 143 54 54 chrX 59461614 59461964 -117512176 + LTR1 LTR ERV1 203 552 -233 192 309 37 25 chrX 59462826 59462907 -117511233 + L3b LINE CR1 1371 1452 -131 * 407 257 51 47 chrX 59462906 59463075 -117511065 - MIR3 SINE MIR -2 206 32 537 215 12 110 chrX 59464009 59464255 -117509885 + L1MC5 LINE L1 7540 7761 -200 263 253 51 25 chrX 59464263 59464342 -117509798 + L1MC5 LINE L1 7833 7913 -48 234 269 13 39 chrX 59466153 59466231 -117507909 - L3 LINE CR1 -93 1484 1409 214 180 0 20 chrX 59466236 59466286 -117507854 + (CCCCG)n Simple_repeat Simple_repeat 1 49 0 2098 81 33 4 chrX 59466292 59466563 -117507577 - AluSg SINE Alu -31 279 1 497 273 40 10 chrX 59467230 59467428 -117506712 + L2 LINE L2 3110 3313 0 276 48 24 24 chrX 59467461 59467503 -117506637 + MER39B LTR ERV1 1 42 -611 842 141 0 0 chrX 59467503 59467638 -117506502 + L1 LINE L1 4914 5048 -1098 2023 143 3 13 chrX 59467648 59467963 -117506177 + AluSq SINE Alu 1 312 -1 1650 95 0 5 chrX 59468013 59468235 -117505905 - AluSg/x SINE Alu -10 300 80 1552 92 22 4 chrX 59468235 59468463 -117505677 + L1MA3 LINE L1 6074 6305 0 3257 168 38 35 chrX 59468490 59468716 -117505424 + MER39 LTR ERV1 75 299 -408 1643 132 66 26 chrX 59468716 59468889 -117505251 - AluSx SINE Alu 0 306 116 2178 107 7 3 chrX 59468889 59469188 -117504952 - AluSx SINE Alu -12 300 1 1643 132 66 26 chrX 59469188 59469309 -117504831 - AluSx SINE Alu -190 116 1 3257 168 38 35 chrX 59469309 59469712 -117504428 + MER39 LTR ERV1 299 707 0 385 290 119 23 chrX 59469713 59470016 -117504124 + L1MC4a LINE L1 5836 6167 -1641 704 256 75 62 chrX 59470412 59470598 -117503542 + L1ME LINE L1 5508 5701 -420 2355 112 0 0 chrX 59470598 59470902 -117503238 + AluSx SINE Alu 1 304 -8 704 256 75 62 chrX 59470902 59471023 -117503117 + L1ME LINE L1 5701 5819 -302 1382 174 110 82 chrX 59471102 59471276 -117502864 - MER31B LTR ERV1 0 466 298 2263 91 0 3 chrX 59471276 59471562 -117502578 - AluSg SINE Alu -18 292 8 1382 174 110 82 chrX 59471562 59471840 -117502300 - MER31B LTR ERV1 -168 298 1 754 253 71 82 chrX 59471841 59472021 -117502119 - MER31B-int LTR ERV1 -21 4915 4734 2154 119 3 3 chrX 59472021 59472332 -117501808 + AluSq SINE Alu 1 311 -2 754 253 71 82 chrX 59472332 59472590 -117501550 - MER31B-int LTR ERV1 -202 4734 4482 359 145 193 12 chrX 59472833 59472916 -117501224 - LTR37A LTR ERV1 -325 101 4 9562 143 39 53 chrX 59472939 59473687 -117500453 - MER31B-int LTR ERV1 -727 4209 3452 2570 58 0 0 chrX 59473687 59473982 -117500158 + AluSc SINE Alu 1 295 -14 9562 143 39 53 chrX 59473982 59474600 -117499540 - MER31B-int LTR ERV1 -1484 3452 2827 2265 98 0 13 chrX 59474600 59474915 -117499225 - AluY SINE Alu 0 311 1 1986 148 0 3 chrX 59474918 59475215 -117498925 - AluJo SINE Alu -16 296 1 9562 143 39 53 chrX 59475215 59475441 -117498699 - MER31B-int LTR ERV1 -2111 2825 2597 2426 78 3 0 chrX 59475441 59475736 -117498404 + AluSq SINE Alu 1 296 -17 9562 143 39 53 chrX 59475736 59476583 -117497557 - MER31B-int LTR ERV1 -2339 2597 292 2149 189 27 35 chrX 59476647 59476975 -117497165 - L1 LINE L1 -1288 4858 4534 1759 164 27 3 chrX 59476975 59477267 -117496873 + AluJo SINE Alu 2 300 -12 2149 189 27 35 chrX 59477267 59477419 -117496721 - L1 LINE L1 -1612 4534 4382 1406 116 5 10 chrX 59477422 59477620 -117496520 - AluSg/x SINE Alu -14 296 100 3355 112 44 18 chrX 59477621 59478111 -117496029 - L1M2 LINE L1 -503 5797 5291 207 0 0 0 chrX 59478111 59478134 -117496006 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 3355 112 44 18 chrX 59478134 59478267 -117495873 - L1M2 LINE L1 -1009 5291 5163 * 9868 130 18 64 chrX 59478264 59478361 -117495779 - L1M4c LINE L1 -4644 1740 1640 2485 79 0 0 chrX 59478361 59478664 -117495476 - AluSg SINE Alu -7 303 1 9868 130 18 64 chrX 59478664 59478940 -117495200 - L1M4c LINE L1 -4744 1640 1353 1780 189 0 10 chrX 59478940 59479231 -117494909 - AluJo SINE Alu -24 288 1 9868 130 18 64 chrX 59479231 59479621 -117494519 - L1M4c LINE L1 -5031 1353 947 2455 96 0 10 chrX 59479621 59479935 -117494205 - AluSp SINE Alu -2 311 1 9868 130 18 64 chrX 59479935 59480933 -117493207 - L1M4c LINE L1 -5437 947 60 2382 81 0 3 chrX 59480933 59481231 -117492909 - AluY SINE Alu -14 297 1 9868 130 18 64 chrX 59481231 59481285 -117492855 - L1M4c LINE L1 -6324 60 5 2027 216 13 41 chrX 59482515 59482977 -117491163 + LTR2 LTR ERV1 1 449 0 1852 174 79 76 chrX 59483586 59483862 -117490278 + LTR55 LTR ERV 1 281 -267 2492 132 91 5 chrX 59483862 59484256 -117489884 + MSTA LTR MaLR 1 428 0 1852 174 79 76 chrX 59484256 59484508 -117489632 + LTR55 LTR ERV 281 531 -17 2592 50 0 0 chrX 59485238 59485539 -117488601 - AluY SINE Alu -6 305 5 2044 140 19 3 chrX 59485544 59485851 -117488289 - AluSx SINE Alu 0 312 1 2537 75 0 0 chrX 59487083 59487390 -117486750 - AluSc SINE Alu -2 307 1 2106 113 3 3 chrX 59487390 59487682 -117486458 - AluSx SINE Alu -20 292 1 2016 159 0 0 chrX 59487688 59487989 -117486151 - AluJb SINE Alu -11 301 1 515 341 34 40 chrX 59488399 59488969 -117485171 + MERVL LTR ERVL 1409 2057 -1577 2000 149 105 11 chrX 59489385 59489747 -117484393 - MSTD LTR MaLR 0 396 1 263 302 21 31 chrX 59490394 59490490 -117483650 + MERVL LTR ERVL 3831 3925 -1560 1978 79 97 18 chrX 59491167 59491446 -117482694 + AluSg1 SINE Alu 1 301 -8 1596 209 3 7 chrX 59491456 59491752 -117482388 + AluJb SINE Alu 1 295 -17 1799 59 0 5 chrX 59492818 59493119 -117481021 + AluY SINE Alu 66 365 0 2520 58 0 0 chrX 59493330 59493625 -117480515 - AluY SINE Alu -16 295 1 646 133 0 112 chrX 59493721 59493864 -117480276 + MLT2D LTR ERVL 1 127 -287 6770 169 102 154 chrX 59493870 59496437 -117477703 + L1MA8 LINE L1 1 2699 -4407 230 158 0 0 chrX 59496437 59496475 -117477665 - 5S rRNA rRNA -82 39 2 6770 169 102 154 chrX 59496475 59497314 -117476826 + L1MA8 LINE L1 2699 3580 -3526 2315 91 0 3 chrX 59497314 59497610 -117476530 + AluSx SINE Alu 1 295 -17 6770 169 102 154 chrX 59497610 59497807 -117476333 + L1MA8 LINE L1 3580 3168 -3938 1414 187 53 20 chrX 59497807 59498107 -117476033 + AluJo SINE Alu 3 312 0 6770 169 102 154 chrX 59498107 59498123 -117476017 + L1MA8 LINE L1 3167 3182 -3924 6046 55 0 0 chrX 59498127 59498821 -117475319 - L1PA6 LINE L1 0 6154 5461 5102 156 48 29 chrX 59498821 59499067 -117475073 + L1MA8 LINE L1 3939 4179 -2927 2354 94 3 0 chrX 59499067 59499365 -117474775 - AluSp SINE Alu -14 299 1 5102 156 48 29 chrX 59499365 59499819 -117474321 + L1MA8 LINE L1 4179 4673 -2433 1716 181 19 10 chrX 59499819 59500128 -117474012 + AluJb SINE Alu 1 312 0 5102 156 48 29 chrX 59500128 59500523 -117473617 + L1MA8 LINE L1 4673 5059 -2047 1964 65 108 14 chrX 59500871 59501150 -117472990 + AluY SINE Alu 1 305 -6 7138 130 29 46 chrX 59501776 59503312 -117470828 + L1MA8 LINE L1 5044 6531 -720 1601 210 0 4 chrX 59503312 59503588 -117470552 + AluJo SINE Alu 1 275 -37 7138 130 29 46 chrX 59503588 59504291 -117469849 + L1MA8 LINE L1 6531 7244 -7 1419 133 32 124 chrX 59504291 59504643 -117469497 + MLT2D LTR ERVL 85 414 0 13210 196 44 24 chrX 59506313 59506392 -117467748 - ERVL LTR ERVL -2344 3420 3344 1555 173 30 26 chrX 59506392 59506663 -117467477 + AluJo SINE Alu 11 282 -30 13210 196 44 24 chrX 59506663 59509311 -117464829 - ERVL LTR ERVL -2420 3344 556 286 134 45 60 chrX 59509454 59509521 -117464619 + MSTD LTR MaLR 1 66 -362 * 957 90 19 65 chrX 59509511 59509666 -117464474 + MSTD LTR MaLR 249 396 0 191 225 0 0 chrX 59510959 59510999 -117463141 - MIR SINE MIR 0 262 223 1812 142 13 48 chrX 59511087 59511398 -117462742 - AluSx SINE Alu -8 304 5 255 157 0 0 chrX 59511725 59511776 -117462364 + GA-rich Low_complexity Low_complexity 2 52 0 971 151 0 0 chrX 59513334 59513480 -117460660 + FRAM SINE Alu 1 145 -31 283 299 109 35 chrX 59514231 59514405 -117459735 - MIR SINE MIR -11 251 65 9665 166 22 25 chrX 59514442 59516362 -117457778 - L1 LINE L1 -1479 6086 4173 216 0 0 0 chrX 59516797 59516821 -117457319 + (T)n Simple_repeat Simple_repeat 1 24 0 3073 158 25 16 chrX 59517178 59518086 -117456054 - L1 LINE L1 -3350 4215 3301 2536 60 0 0 chrX 59518112 59518410 -117455730 + AluY SINE Alu 3 300 -11 324 248 28 99 chrX 59518549 59518690 -117455450 + L2 LINE L2 3178 3308 -5 2447 70 3 3 chrX 59518690 59518988 -117455152 + AluSp SINE Alu 1 298 -15 434 208 198 10 chrX 59519222 59519323 -117454817 + L2 LINE L2 3192 3311 -2 414 312 18 46 chrX 59519517 59519695 -117454445 - MIR SINE MIR -68 140 17 2331 103 0 0 chrX 59520261 59520563 -117453577 + AluSx SINE Alu 3 304 -8 209 156 0 22 chrX 59521228 59521273 -117452867 + CT-rich Low_complexity Low_complexity 1 44 0 444 242 17 42 chrX 59521340 59521460 -117452680 + MIR SINE MIR 30 146 -62 351 227 30 45 chrX 59521663 59521720 -117452420 - MER113 DNA MER1_type? -391 130 74 3949 97 51 3 chrX 59521720 59522288 -117451852 + LTR49 LTR ERV1 1 595 0 351 227 30 45 chrX 59522288 59522362 -117451778 - MER113 DNA MER1_type? -447 74 1 1148 140 0 6 chrX 59522431 59522602 -117451538 - AluSg/x SINE Alu -12 300 131 858 143 7 7 chrX 59522638 59522778 -117451362 + AluJb SINE Alu 139 278 -34 288 0 0 0 chrX 59522778 59522810 -117451330 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 414 0 0 0 chrX 59522809 59522855 -117451285 + (CA)n Simple_repeat Simple_repeat 1 46 0 223 231 19 0 chrX 59522884 59522936 -117451204 + MIR3 SINE MIR 150 202 -6 2262 294 88 33 chrX 59523816 59524590 -117449550 + L1M4 LINE L1 9 864 -5678 6388 93 19 17 chrX 59524590 59525849 -117448291 - L1PB2 LINE L1 -2 6149 4869 2262 294 88 33 chrX 59525849 59526183 -117447957 + L1M4 LINE L1 864 1178 -5364 2227 100 0 10 chrX 59526785 59527094 -117447046 + AluSc SINE Alu 1 306 -3 227 296 0 0 chrX 59527286 59527357 -117446783 + (CAG)n Simple_repeat Simple_repeat 3 73 0 200 232 0 29 chrX 59527412 59527481 -117446659 + (CGG)n Simple_repeat Simple_repeat 2 68 0 6041 185 11 9 chrX 59529723 59530855 -117443285 + HERVH LTR ERV1 6580 7713 0 614 251 70 33 chrX 59531036 59531251 -117442889 + LTR7 LTR ERV1 228 450 0 4075 200 18 31 chrX 59531898 59532574 -117441566 - L1PA15-16 LINE L1 -4685 1518 764 2838 128 14 0 chrX 59532574 59533002 -117441138 + MER57B LTR ERV1 1 434 0 4075 200 18 31 chrX 59533002 59533279 -117440861 - L1PA15-16 LINE L1 -5439 764 485 402 322 81 74 chrX 59533587 59533845 -117440295 - L1M2 LINE L1 -5794 1055 796 1380 294 30 53 chrX 59534082 59535112 -117439028 - L1PA12 LINE L1 -5501 2080 11 582 128 0 0 chrX 59535164 59535266 -117438874 - L1MB2 LINE L1 -1 6170 6069 639 299 108 31 chrX 59535316 59535967 -117438173 - L1M4 LINE L1 -1860 5705 5005 579 224 77 70 chrX 59536212 59536498 -117437642 - HUERS-P3 LTR ERV1 -7890 1029 742 1904 199 53 25 chrX 59536560 59536958 -117437182 - HUERS-P3 LTR ERV1 -6889 529 121 524 237 0 30 chrX 59537068 59537203 -117436937 - HUERS-P3 LTR ERV1 -8788 131 1 4009 130 41 8 chrX 59537203 59537819 -117436321 - LTR9B LTR ERV1 0 644 9 2552 74 0 10 chrX 59537819 59538131 -117436009 - AluSg SINE Alu -1 309 1 603 246 72 26 chrX 59539679 59539874 -117434266 + LTR7 LTR ERV1 243 446 -4 7545 224 27 46 chrX 59539878 59542893 -117431247 + HERVH LTR ERV1 1 2913 -3673 7358 188 16 9 chrX 59543441 59545639 -117428501 - L1PA15-16 LINE L1 -5078 1771 1 1873 198 48 17 chrX 59545803 59546923 -117427217 - L1M4 LINE L1 -2895 4670 3211 3059 81 19 2 chrX 59546990 59547400 -117426740 - L1PA7 LINE L1 0 6154 5738 272 231 0 0 chrX 59547410 59547475 -117426665 - L1M4 LINE L1 -4335 2230 2166 14753 55 14 0 chrX 59547478 59549294 -117424846 + L1P LINE L1 1 1841 -4305 268 24 24 24 chrX 59549294 59549336 -117424804 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4378 66 15 0 chrX 59549336 59549863 -117424277 - SVA Other Other -23 1363 829 11522 135 26 54 chrX 59549963 59552170 -117421970 - L1P3 LINE L1 -3841 2620 402 180 0 0 0 chrX 59552170 59552190 -117421950 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 11522 135 26 54 chrX 59552190 59552578 -117421562 - L1P3 LINE L1 -6059 402 5 274 273 22 3 chrX 59553706 59553841 -117420299 + L1M3de LINE L1 802 1312 -4991 15989 93 10 9 chrX 59554549 59555710 -117418430 - L1PA8 LINE L1 0 6487 5328 2205 105 3 0 chrX 59555710 59556004 -117418136 - AluSp SINE Alu -18 295 1 15989 93 10 9 chrX 59556004 59557955 -117416185 - L1PA8 LINE L1 -1159 5328 3371 3256 151 39 6 chrX 59557955 59558465 -117415675 - L1PA8 LINE L1 -5929 532 6 2134 125 3 3 chrX 59558657 59558954 -117415186 - AluSc SINE Alu -12 297 1 2432 145 32 56 chrX 59559612 59560109 -117414031 - LTR19A LTR ERV1 0 486 2 4123 98 14 29 chrX 59560318 59560971 -117413169 - LTR9B LTR ERV1 -1 643 1 6101 134 29 10 chrX 59560971 59562004 -117412136 - HUERS-P3 LTR ERV1 0 8919 6938 6757 84 9 12 chrX 59562008 59562911 -117411229 - HUERS-P3 LTR ERV1 -734 6684 5785 13006 192 12 9 chrX 59563037 59565440 -117408700 + L1PA13 LINE L1 34 2457 -4340 951 208 61 4 chrX 59565544 59565823 -117408317 - L1 LINE L1 -2778 3368 3074 1234 148 0 14 chrX 59565902 59566111 -117408029 - L1PB1 LINE L1 0 6151 5946 1613 104 32 4 chrX 59566112 59566362 -117407778 - L1PA15-16 LINE L1 -4855 1994 1738 14423 93 12 7 chrX 59568508 59570594 -117403546 - L1P LINE L1 -750 5396 3300 9946 181 85 10 chrX 59570695 59572893 -117401247 + L1PA13 LINE L1 3620 5983 -814 370 122 0 81 chrX 59572894 59572955 -117401185 + LTR7 LTR ERV1 346 402 -48 180 0 0 0 chrX 59572955 59572975 -117401165 + (CA)n Simple_repeat Simple_repeat 1 20 0 370 122 0 81 chrX 59572975 59572987 -117401153 + LTR7 LTR ERV1 402 413 -37 4983 131 11 40 chrX 59572987 59573024 -117401116 + L1PA13 LINE L1 5983 6020 -794 2649 46 0 0 chrX 59573024 59573327 -117400813 + AluY SINE Alu 1 303 -8 4983 131 11 40 chrX 59573327 59574146 -117399994 + L1PA13 LINE L1 6020 6814 0 4389 143 23 3 chrX 59574146 59574869 -117399271 + L1PA16 LINE L1 5413 6156 -10 13809 183 11 21 chrX 59575000 59578176 -117395964 + HERVH LTR ERV1 3331 6416 -1297 5607 80 69 12 chrX 59578277 59579074 -117395066 - SVA Other Other -544 842 1 5991 40 15 3 chrX 59579084 59579834 -117394306 + L1PA4 LINE L1 1814 2572 -3574 13752 24 1 0 chrX 59579834 59582188 -117391952 + L1PA4 LINE L1 3793 6152 -3 207 0 0 0 chrX 59582195 59582218 -117391922 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3148 255 57 12 chrX 59582218 59583058 -117391082 - L1M3f LINE L1 -4392 936 59 5461 200 34 17 chrX 59583153 59584028 -117390112 - L1 LINE L1 -1974 5234 4328 2022 138 3 7 chrX 59584028 59584319 -117389821 - AluSg SINE Alu -20 290 1 5461 200 34 17 chrX 59584319 59584752 -117389388 - L1 LINE L1 -2880 4328 3904 1536 150 21 131 chrX 59584757 59585131 -117389009 - MER7A DNA MER2_type -14 332 2 2009 173 88 18 chrX 59585142 59585308 -117388832 + MSTA LTR MaLR 1 154 -274 2347 96 7 0 chrX 59585308 59585609 -117388531 + AluSp SINE Alu 6 308 -5 2009 173 88 18 chrX 59585609 59585842 -117388298 + MSTA LTR MaLR 154 428 0 4308 171 18 4 chrX 59585842 59586585 -117387555 + MSTA-int LTR MaLR 1 753 -898 3731 220 5 20 chrX 59586604 59587524 -117386616 - L1PA12 LINE L1 -3363 4221 3315 2553 282 41 65 chrX 59587516 59589021 -117385119 - L1PA12 LINE L1 -5577 2004 7 * 960 214 15 20 chrX 59589108 59589304 -117384836 - MLT1E LTR MaLR 0 593 399 2546 147 49 2 chrX 59589304 59589441 -117384699 - L1MA4A LINE L1 -371 5932 5803 315 0 0 0 chrX 59589441 59589476 -117384664 + (TG)n Simple_repeat Simple_repeat 2 36 0 2546 147 49 2 chrX 59589476 59589787 -117384353 - L1MA4A LINE L1 -500 5803 5463 3132 298 70 83 chrX 59589788 59591519 -117382621 - L1 LINE L1 -5355 1854 135 2294 64 0 3 chrX 59642365 59642839 -117331301 + AluY SINE Alu 2 474 0 2025 181 19 26 chrX 59643960 59644138 -117330002 + L1M4 LINE L1 3527 3705 -2441 1920 100 4 4 chrX 59644138 59644445 -117329695 + AluSg SINE Alu 1 307 0 2025 181 19 26 chrX 59644445 59644680 -117329460 + L1M4 LINE L1 3705 3938 -2208 1404 159 63 7 chrX 59644683 59644953 -117329187 + L1MC1 LINE L1 6044 6328 -5 183 356 11 23 chrX 59644979 59645066 -117329074 - MIR SINE MIR -172 90 5 1782 204 46 88 chrX 59645194 59646004 -117328136 + L1MA9 LINE L1 1888 6676 -30 286 198 40 50 chrX 59646010 59646111 -117328029 + L1MDa LINE L1 1877 1976 -4566 2149 172 48 0 chrX 59646115 59646487 -117327653 + MLT1B LTR MaLR 1 390 0 1171 223 50 16 chrX 59646496 59646878 -117327262 + L1MDa LINE L1 2082 2476 -4066 206 77 26 26 chrX 59646898 59646937 -117327203 + (TA)n Simple_repeat Simple_repeat 1 39 0 1873 190 10 25 chrX 59646946 59647340 -117326800 - MLT1B LTR MaLR -2 388 1 891 173 0 50 chrX 59647357 59647536 -117326604 + AluJo SINE Alu 1 170 -142 3776 222 43 51 chrX 59647567 59649011 -117325129 + L1ME2 LINE L1 2041 3463 -2919 841 138 0 36 chrX 59649011 59649149 -117324991 + FLAM_C SINE Alu 1 133 0 3776 222 43 51 chrX 59649149 59649444 -117324696 + L1ME2 LINE L1 3463 3759 -2623 3413 135 7 4 chrX 59649446 59649461 -117324679 + L1M1 LINE L1 12 25 -7540 2074 112 3 0 chrX 59649461 59649748 -117324392 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 59649748 59649771 -117324369 + (GGA)n Simple_repeat Simple_repeat 3 25 0 3413 135 7 4 chrX 59649771 59650658 -117323482 + L1M1 LINE L1 24 1044 -6521 2718 98 43 19 chrX 59650658 59651076 -117323064 - MSTA LTR MaLR 0 428 1 257 128 0 21 chrX 59651076 59651123 -117323017 - MSTA-int LTR MaLR 0 1651 1606 * 1387 199 114 52 chrX 59651118 59651556 -117322584 + L1ME3A LINE L1 5672 6136 -34 724 209 39 61 chrX 59651583 59651813 -117322327 + L1ME2 LINE L1 5101 5325 -1057 290 45 23 0 chrX 59651814 59651858 -117322282 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 813 142 17 0 chrX 59651859 59651979 -117322161 - FLAM_C SINE Alu -20 123 2 350 204 65 9 chrX 59651979 59652087 -117322053 + L1ME2 LINE L1 5318 5431 -951 258 154 154 0 chrX 59652086 59652151 -117321989 - L1M4 LINE L1 -849 5297 5223 * 2203 92 3 0 chrX 59652221 59652516 -117321624 - AluSp SINE Alu -17 296 1 22 0 0 0 chrX 59652520 59652542 -117321598 + AT_rich Low_complexity Low_complexity 1 22 0 3186 165 140 39 chrX 59652546 59653384 -117320756 + L1ME2 LINE L1 5431 6359 -41 2282 101 0 0 chrX 59653384 59653692 -117320448 + AluSx SINE Alu 1 308 -4 3186 165 140 39 chrX 59653692 59653728 -117320412 + L1ME2 LINE L1 6359 6390 -10 186 71 0 0 chrX 59654568 59654596 -117319544 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2054 98 0 3 chrX 59654600 59654885 -117319255 - AluSx SINE Alu -28 284 1 243 289 171 0 chrX 59655228 59655304 -117318836 + MIR SINE MIR 35 123 -85 194 200 0 0 chrX 59655544 59655579 -117318561 + MIR3 SINE MIR 125 159 -49 204 255 20 0 chrX 59656056 59656107 -117318033 + MIR SINE MIR 211 262 0 * 343 216 117 49 chrX 59656075 59656237 -117317903 - MIR SINE MIR -27 235 63 10477 48 5 40 chrX 59656261 59657672 -117316468 - SVA Other Other -4 1382 21 263 214 36 0 chrX 59658068 59658124 -117316016 + L2 LINE L2 3256 3313 0 260 133 22 0 chrX 59658144 59658189 -117315951 - L2 LINE L2 -88 3225 3180 398 279 235 0 chrX 59658238 59658374 -117315766 + MIR SINE MIR 9 176 -86 504 246 41 33 chrX 59658439 59658561 -117315579 + MIR3 SINE MIR 85 207 -1 401 258 129 16 chrX 59658634 59658758 -117315382 - MIR SINE MIR -8 254 117 260 364 119 0 chrX 59658779 59658897 -117315243 - L2 LINE L2 0 3272 3141 255 273 0 0 chrX 59659006 59659061 -117315079 + L2 LINE L2 3255 3309 -4 180 380 124 7 chrX 59659677 59659814 -117314326 + L3b LINE CR1 1422 1574 -9 242 192 19 19 chrX 59659856 59659908 -117314232 - L3 LINE CR1 -2 1575 1524 387 318 11 17 chrX 59660223 59660399 -117313741 - MER5B DNA MER1_type -3 175 1 446 224 159 0 chrX 59660865 59660972 -117313168 + L2 LINE L2 3187 3310 -3 267 290 108 11 chrX 59661235 59661328 -117312812 + L2 LINE L2 3153 3254 -18 210 71 0 0 chrX 59661328 59661356 -117312784 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 206 327 139 42 chrX 59661364 59661529 -117312611 - L2 LINE L2 -497 2817 2637 1791 108 104 0 chrX 59661738 59662007 -117312133 - AluSx SINE Alu -12 300 4 2408 117 3 9 chrX 59662089 59662430 -117311710 - MER1B DNA MER1_type 0 339 1 402 289 48 0 chrX 59662571 59662675 -117311465 - MIR SINE MIR -68 140 32 676 324 13 9 chrX 59662779 59663004 -117311136 + MIR SINE MIR 22 247 -15 2174 67 14 0 chrX 59663524 59663809 -117310331 + AluSx SINE Alu 10 298 -14 266 280 95 47 chrX 59663922 59664076 -117310064 + MIR3 SINE MIR 10 160 -79 307 30 0 76 chrX 59664960 59665026 -117309114 + (CCCGG)n Simple_repeat Simple_repeat 3 63 0 314 326 0 0 chrX 59665658 59665756 -117308384 + G-rich Low_complexity Low_complexity 2 99 0 224 58 0 115 chrX 59665818 59665870 -117308270 + (CAG)n Simple_repeat Simple_repeat 3 48 0 245 328 0 17 chrX 59666015 59666068 -117308072 + (CCCGAA)n Simple_repeat Simple_repeat 1 53 -64 183 114 0 0 chrX 59666068 59666103 -117308037 + (CCCCAG)n Simple_repeat Simple_repeat 6 40 0 245 328 0 17 chrX 59666103 59666168 -117307972 + (CCCGAA)n Simple_repeat Simple_repeat 53 117 0 1241 200 56 0 chrX 59669160 59669321 -117304819 - AluJo SINE Alu -20 292 111 216 0 0 0 chrX 59669321 59669345 -117304795 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1241 200 56 0 chrX 59669345 59669433 -117304707 - AluJo SINE Alu -201 111 29 544 237 82 7 chrX 59670880 59671015 -117303125 + MIR3 SINE MIR 63 207 -1 285 98 0 0 chrX 59672095 59672136 -117302004 + (CA)n Simple_repeat Simple_repeat 1 41 0 435 135 292 0 chrX 59673381 59673477 -117300663 + AluJb SINE Alu 188 311 -1 1769 150 3 13 chrX 59673479 59673779 -117300361 + AluJb SINE Alu 1 297 -15 312 280 0 13 chrX 59674030 59674105 -117300035 + tRNA-Ile-ATT tRNA tRNA 2 75 -2 1044 203 45 37 chrX 59674376 59674618 -117299522 - MIR SINE MIR 0 262 19 4675 120 11 29 chrX 59674872 59675035 -117299105 + L1PA16 LINE L1 5417 5581 -585 1747 167 7 0 chrX 59675035 59675335 -117298805 - AluJb SINE Alu -10 302 1 4675 120 11 29 chrX 59675335 59675932 -117298208 + L1PA16 LINE L1 5581 6163 -3 312 302 52 10 chrX 59675932 59676028 -117298112 + MIR SINE MIR 67 166 -96 289 226 54 86 chrX 59676895 59676988 -117297152 - MIR3 SINE MIR -21 187 98 1313 178 32 28 chrX 59677350 59677383 -117296757 - L1PA16 LINE L1 -9 6157 6126 2183 117 0 0 chrX 59677383 59677681 -117296459 + AluSx SINE Alu 1 298 -14 1313 178 32 28 chrX 59677681 59677900 -117296240 - L1PA16 LINE L1 -40 6126 5904 296 280 87 13 chrX 59677916 59678066 -117296074 - L1MC4a LINE L1 -1886 5922 5762 577 285 84 19 chrX 59678104 59678318 -117295822 + MIR SINE MIR 28 255 -7 2439 63 0 50 chrX 59679106 59679423 -117294717 - AluSg SINE Alu -9 301 1 210 281 0 67 chrX 59679616 59679705 -117294435 - MIR SINE MIR -114 148 66 495 205 0 0 chrX 59679705 59679788 -117294352 + FRAM SINE Alu 64 146 -30 405 102 0 0 chrX 59679789 59679848 -117294292 + (TA)n Simple_repeat Simple_repeat 1 59 0 182 205 77 0 chrX 59679859 59679898 -117294242 - MIR SINE MIR -131 77 36 539 252 7 33 chrX 59680084 59680235 -117293905 + MIR3 SINE MIR 10 156 -52 207 162 0 0 chrX 59680484 59680521 -117293619 + (TG)n Simple_repeat Simple_repeat 1 37 0 764 203 25 64 chrX 59680723 59680959 -117293181 + MIR SINE MIR 36 262 0 359 276 81 57 chrX 59682426 59682636 -117291504 + MIR SINE MIR 5 219 -43 251 88 0 0 chrX 59683406 59683440 -117290700 + (TC)n Simple_repeat Simple_repeat 2 35 0 775 135 21 0 chrX 59683452 59683593 -117290547 + CT-rich Low_complexity Low_complexity 3 146 0 1751 161 47 17 chrX 59683595 59683894 -117290246 - AluJb SINE Alu -4 308 1 677 233 0 0 chrX 59684470 59684599 -117289541 + MER94 DNA DNA 1 129 -5 211 104 42 0 chrX 59684680 59684728 -117289412 + (TG)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chrX 59684816 59684837 -117289303 + (T)n Simple_repeat Simple_repeat 1 21 0 214 316 22 7 chrX 59684925 59685061 -117289079 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 0 0 0 chrX 59685095 59685116 -117289024 + (TG)n Simple_repeat Simple_repeat 1 21 0 618 79 0 0 chrX 59685267 59685356 -117288784 - AluY SINE Alu -18 293 205 2292 85 0 3 chrX 59685357 59685651 -117288489 - AluSx SINE Alu -18 294 2 2448 85 3 0 chrX 59686240 59686547 -117287593 + AluSp SINE Alu 1 308 -5 527 260 86 29 chrX 59686839 59686970 -117287170 - MIR SINE MIR -6 256 108 2193 98 3 7 chrX 59686970 59687257 -117286883 + AluSg SINE Alu 3 288 -22 527 260 86 29 chrX 59687257 59687334 -117286806 - MIR SINE MIR -154 108 37 510 310 31 25 chrX 59687351 59687594 -117286546 - MIR SINE MIR -15 247 5 262 125 0 0 chrX 59687613 59687653 -117286487 + MIR3 SINE MIR 155 194 -14 305 273 0 94 chrX 59688767 59688895 -117285245 + MIR SINE MIR 25 140 -68 334 186 105 12 chrX 59689368 59689454 -117284686 - MIR SINE MIR -101 161 68 195 311 0 16 chrX 59689983 59690044 -117284096 + L2 LINE L2 3249 3308 -5 1778 147 44 4 chrX 59690642 59690959 -117283181 + AluJb SINE Alu 1 328 0 1963 137 0 36 chrX 59691684 59691990 -117282150 + AluJo SINE Alu 1 295 -17 1988 158 0 22 chrX 59691990 59692306 -117281834 + AluSx SINE Alu 1 309 -3 382 312 17 35 chrX 59692402 59692575 -117281565 + MER5A DNA MER1_type 19 188 -1 225 0 0 0 chrX 59692596 59692621 -117281519 + (T)n Simple_repeat Simple_repeat 1 25 0 420 264 39 16 chrX 59693455 59693584 -117280556 + MIR3 SINE MIR 25 156 -52 398 152 0 63 chrX 59694491 59694570 -117279570 + L2 LINE L2 3197 3270 -2 416 286 117 0 chrX 59694626 59694780 -117279360 + MIR3 SINE MIR 37 208 0 389 248 174 0 chrX 59696724 59696873 -117277267 - MER112 DNA MER1_type -7 253 79 283 252 24 16 chrX 59696879 59697002 -117277138 + (TA)n Simple_repeat Simple_repeat 1 124 0 553 299 62 62 chrX 59697025 59697346 -117276794 - L3 LINE CR1 -402 1175 852 2036 110 46 0 chrX 59697346 59697627 -117276513 - AluSx SINE Alu -17 295 2 553 299 62 62 chrX 59697627 59697709 -117276431 - L3 LINE CR1 -724 853 772 194 0 39 0 chrX 59697859 59697885 -117276255 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 1355 163 0 0 chrX 59697885 59698087 -117276053 - 7SLRNA srpRNA srpRNA -22 298 97 293 246 66 0 chrX 59698089 59698150 -117275990 - FRAM/FAM SINE Alu -101 65 1 1032 77 7 0 chrX 59698159 59698302 -117275838 - L1MA4 LINE L1 -4 6296 6153 5280 22 13 0 chrX 59698423 59699026 -117275114 + L1PA4 LINE L1 5545 6155 0 797 251 39 30 chrX 59699308 59699539 -117274601 + MIR SINE MIR 30 262 0 184 264 38 0 chrX 59699595 59699648 -117274492 - MIR SINE MIR -109 153 99 204 40 0 0 chrX 59700816 59700841 -117273299 + (CAA)n Simple_repeat Simple_repeat 1 25 0 428 306 31 19 chrX 59701112 59701272 -117272868 - MIR3 SINE MIR -14 194 33 647 273 0 38 chrX 59701365 59701477 -117272663 + MER5B DNA MER1_type 3 107 -71 611 26 13 0 chrX 59701477 59701553 -117272587 - L1PA5 LINE L1 -5 6149 6073 647 273 0 38 chrX 59701553 59701623 -117272517 + MER5B DNA MER1_type 107 178 0 2251 145 25 20 chrX 59702473 59702648 -117271492 - L1MA9 LINE L1 -3 6309 6136 2406 75 3 0 chrX 59702648 59702940 -117271200 - AluSp SINE Alu -19 294 2 2251 145 25 20 chrX 59702940 59703172 -117270968 - L1MA9 LINE L1 -176 6136 5900 269 280 114 15 chrX 59703793 59703925 -117270215 + MIR SINE MIR 63 207 -55 893 298 98 41 chrX 59704412 59704851 -117269289 + LTR16B LTR ERVL 1 464 0 2486 70 0 3 chrX 59704945 59705244 -117268896 - AluY SINE Alu -13 298 1 249 250 100 12 chrX 59705476 59705556 -117268584 + MIR SINE MIR 30 116 -92 249 163 0 0 chrX 59705701 59705750 -117268390 + (TG)n Simple_repeat Simple_repeat 1 49 0 228 268 0 0 chrX 59705749 59705831 -117268309 + GA-rich Low_complexity Low_complexity 1 82 0 * 2286 108 0 0 chrX 59706614 59706910 -117267230 - AluSg SINE Alu -13 297 2 327 293 64 21 chrX 59707175 59707315 -117266825 + MIR3 SINE MIR 11 156 -52 1724 225 20 35 chrX 59707765 59707826 -117266314 - L1ME1 LINE L1 -6 6160 6100 2427 71 0 3 chrX 59707826 59708120 -117266020 - AluY SINE Alu -18 293 1 1724 225 20 35 chrX 59708120 59708546 -117265594 - L1ME1 LINE L1 -66 6100 5680 826 162 0 21 chrX 59709027 59709169 -117264971 + FLAM_C SINE Alu 1 139 -4 402 96 0 0 chrX 59709169 59709221 -117264919 + FLAM SINE Alu 64 115 -28 255 61 0 0 chrX 59709221 59709254 -117264886 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2111 139 18 21 chrX 59710643 59710981 -117263159 + MER2 DNA MER2_type 1 337 -8 356 328 8 0 chrX 59711484 59711609 -117262531 - MIR3 SINE MIR -23 185 60 188 348 105 11 chrX 59712181 59712362 -117261778 + L2 LINE L2 2838 3035 -237 2580 181 8 43 chrX 59712383 59712981 -117261159 - L1MB8 LINE L1 -6 6983 6407 5271 171 16 10 chrX 59712983 59713955 -117260185 - L1MA4 LINE L1 -6 6294 5317 6548 152 30 18 chrX 59713969 59714959 -117259181 - L1MC1 LINE L1 -19 6594 5573 2373 56 28 0 chrX 59714959 59715243 -117258897 + AluY SINE Alu 2 293 -18 6548 152 30 18 chrX 59715243 59715575 -117258565 - L1MC1 LINE L1 -1040 5573 5246 824 139 0 0 chrX 59715629 59715751 -117258389 - L1MC1 LINE L1 -6276 150 29 * 2324 215 33 26 chrX 59715748 59715926 -117258214 - L1MB8 LINE L1 -810 6147 5972 3335 113 21 51 chrX 59715926 59716492 -117257648 - L1MB3 LINE L1 -1 6182 5634 2324 215 33 26 chrX 59716492 59716954 -117257186 - L1MB8 LINE L1 -985 5972 5503 180 179 0 0 chrX 59717541 59717580 -117256560 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1964 202 15 8 chrX 59718308 59718778 -117255362 - L1MB8 LINE L1 -1441 5516 5044 * 43610 49 2 2 chrX 59718772 59724925 -117249215 - L1PA4 LINE L1 0 6155 1 4019 238 45 17 chrX 59724934 59726117 -117248023 - L1MB8 LINE L1 -1902 5055 3840 1060 192 16 8 chrX 59726117 59726362 -117247778 - L1MB7 LINE L1 -16 6168 5922 1575 268 36 30 chrX 59726363 59726985 -117247155 - L1MB8 LINE L1 -4764 2195 1567 1529 175 13 40 chrX 59726985 59727288 -117246852 - AluJb SINE Alu -7 305 11 1575 268 36 30 chrX 59727288 59727359 -117246781 - L1MB8 LINE L1 -5392 1567 1498 3242 278 56 32 chrX 59727377 59728390 -117245750 - L1MB8 LINE L1 -5592 1267 230 3057 131 16 10 chrX 59728392 59728987 -117245153 - MER4E LTR ERV1 0 766 1 2555 122 18 13 chrX 59728987 59729227 -117244913 - MER4E-int LTR ERV1 0 6758 6514 2383 87 3 0 chrX 59729227 59729526 -117244614 + AluSp SINE Alu 1 300 -13 2555 122 18 13 chrX 59729526 59729678 -117244462 - MER4E-int LTR ERV1 -244 6514 6364 189 94 0 0 chrX 59729678 59729710 -117244430 + (TA)n Simple_repeat Simple_repeat 2 33 0 1550 113 44 20 chrX 59729716 59729775 -117244365 - MER4E-int LTR ERV1 -458 6300 6244 5667 91 0 30 chrX 59729775 59730579 -117243561 - LTR17 LTR ERV1 0 780 1 1550 113 44 20 chrX 59730579 59730773 -117243367 - MER4E-int LTR ERV1 -514 6244 6042 * 4344 48 3 7 chrX 59730751 59731287 -117242853 + L1PA5 LINE L1 5363 5902 -252 1071 116 0 66 chrX 59731291 59731472 -117242668 - MER4B-int LTR ERV1 -2152 4606 4438 * 4195 138 36 5 chrX 59731456 59732093 -117242047 - MER4B-int LTR ERV1 -2670 4088 3432 8974 102 90 50 chrX 59732098 59734248 -117239892 - MER4B-int LTR ERV1 -3668 3090 1227 426 39 0 0 chrX 59734253 59734305 -117239835 + (CA)n Simple_repeat Simple_repeat 1 52 0 5411 123 24 17 chrX 59734305 59735391 -117238749 - MER4B-int LTR ERV1 -5609 1149 1 2999 149 53 37 chrX 59735422 59735987 -117238153 - MER4B LTR ERV1 -36 574 1 1022 230 42 0 chrX 59735987 59736200 -117237940 - L1M4b LINE L1 -6631 228 7 334 320 67 20 chrX 59736578 59736728 -117237412 + L3 LINE CR1 1332 1488 -89 499 261 24 20 chrX 59738575 59738819 -117235321 - L1MC5 LINE L1 -48 7913 7606 206 262 99 57 chrX 59739017 59739158 -117234982 - MIR SINE MIR -102 160 14 449 262 51 47 chrX 59739815 59739984 -117234156 + MIR3 SINE MIR 32 206 -2 220 309 37 25 chrX 59739983 59740064 -117234076 - L3b LINE CR1 -131 1452 1371 * 375 23 0 0 chrX 59740546 59740590 -117233550 + (CA)n Simple_repeat Simple_repeat 2 45 0 1550 189 60 12 chrX 59740931 59741265 -117232875 - LTR1 LTR ERV1 -233 552 203 1316 159 12 28 chrX 59741235 59741509 -117232631 - LTR1 LTR ERV1 -527 258 46 * 3160 158 43 84 chrX 59742261 59742985 -117231155 + LTR8A LTR ERV1 34 727 0 788 203 130 139 chrX 59743344 59743735 -117230405 + MER31B LTR ERV1 1 389 -77 1977 166 0 0 chrX 59743735 59744043 -117230097 - AluSx SINE Alu 0 312 5 788 203 130 139 chrX 59744043 59744075 -117230065 + MER31B LTR ERV1 389 420 -46 2186 139 56 19 chrX 59744112 59744486 -117229654 - LTR51 LTR ERV1 0 671 284 1563 134 29 8 chrX 59744709 59744955 -117229185 - L1PB1 LINE L1 -8 6143 5893 201 390 12 0 chrX 59745036 59745118 -117229022 - MIR SINE MIR -62 146 64 331 329 70 61 chrX 59745269 59745296 -117228844 - MIR SINE MIR -30 232 207 610 90 13 0 chrX 59745296 59745374 -117228766 - MADE1 DNA Mariner 0 80 2 331 329 70 61 chrX 59745374 59745574 -117228566 - MIR SINE MIR -55 207 3 1133 44 7 0 chrX 59746131 59746267 -117227873 + L1PA5 LINE L1 6017 6153 -1 508 256 15 22 chrX 59746402 59746539 -117227601 + MIR3 SINE MIR 65 200 -8 301 276 9 70 chrX 59747927 59748053 -117226087 + MIR SINE MIR 31 142 -85 789 259 19 63 chrX 59748053 59748323 -117225817 + MIR SINE MIR 5 262 0 301 276 9 70 chrX 59748323 59748346 -117225794 + MIR SINE MIR 142 165 -62 511 229 19 98 chrX 59748878 59749011 -117225129 - MIR SINE MIR -65 197 84 1727 159 7 7 chrX 59749011 59749316 -117224824 + AluJb SINE Alu 9 312 0 511 229 19 98 chrX 59749316 59749387 -117224753 - MIR SINE MIR -178 84 9 187 248 266 35 chrX 59750534 59750647 -117223493 + MIR3 SINE MIR 2 140 -68 433 276 16 39 chrX 59751068 59751195 -117222945 + MIR SINE MIR 16 139 -69 1770 112 7 82 chrX 59751195 59751548 -117222592 - AluJo SINE Alu 0 330 1 384 250 19 0 chrX 59751573 59751677 -117222463 - L1ME3 LINE L1 0 6334 6067 * 2603 120 2 55 chrX 59751675 59752109 -117222031 + L1PB4 LINE L1 5503 5913 -243 2289 100 0 0 chrX 59752103 59752412 -117221728 - L1MA5 LINE L1 -461 5839 5531 * 4634 206 44 42 chrX 59752408 59752999 -117221141 - L1M4 LINE L1 -1391 4755 4167 1380 66 0 0 chrX 59752999 59753165 -117220975 - L1PA14 LINE L1 -4 6157 5992 4634 206 44 42 chrX 59753165 59753250 -117220890 - L1M4 LINE L1 -1979 4167 4084 1932 121 4 7 chrX 59753250 59753555 -117220585 - AluJb SINE Alu 0 305 2 4634 206 44 42 chrX 59753555 59753856 -117220284 - L1M4 LINE L1 -2062 4084 3770 2232 92 3 13 chrX 59753856 59754159 -117219981 - AluSx SINE Alu -12 300 1 4634 206 44 42 chrX 59754159 59754408 -117219732 - L1M4 LINE L1 -2376 3770 3523 1629 160 0 66 chrX 59755062 59755380 -117218760 + AluJo SINE Alu 1 297 -15 2309 64 0 0 chrX 59755462 59755775 -117218365 - AluY SINE Alu 0 313 1 245 341 38 23 chrX 59758140 59758272 -117215868 + L2 LINE L2 3139 3272 0 10613 189 67 46 chrX 59758332 59760338 -117213802 + L1MDa LINE L1 48 2120 -4420 1836 169 26 10 chrX 59760338 59760645 -117213495 - AluJb SINE Alu 0 312 1 10613 189 67 46 chrX 59760645 59761187 -117212953 + L1MDa LINE L1 2120 2649 -3891 1011 219 147 42 chrX 59761185 59761582 -117212558 + L1MD2 LINE L1 5851 6240 -2 * 3154 194 35 68 chrX 59761898 59762605 -117211535 - L1ME1 LINE L1 -5 6161 5499 2006 139 16 3 chrX 59762605 59762908 -117211232 + AluSx SINE Alu 2 308 -4 3154 194 35 68 chrX 59762908 59763425 -117210715 - L1ME1 LINE L1 -667 5499 4967 2269 95 0 0 chrX 59763473 59763769 -117210371 - AluY SINE Alu -15 296 1 2114 122 0 3 chrX 59764563 59764878 -117209262 + AluSx SINE Alu 1 314 0 238 368 0 0 chrX 59768245 59768313 -117205827 + (CTGGGG)n Simple_repeat Simple_repeat 5 72 0 567 211 64 41 chrX 59770155 59770336 -117203804 - MER20 DNA MER1_type 0 219 1 2257 92 3 0 chrX 59771004 59771296 -117202844 + AluSx SINE Alu 13 305 -7 474 182 154 27 chrX 59771313 59771423 -117202717 + FLAM_A SINE Alu 1 124 -9 244 306 126 27 chrX 59771464 59771575 -117202565 - MIR SINE MIR -108 154 33 8846 183 85 76 chrX 59772579 59772627 -117201513 + Cheshire DNA MER1_type 4 50 -2370 2122 108 3 7 chrX 59772627 59772923 -117201217 - AluSx SINE Alu -17 295 1 8846 183 85 76 chrX 59772923 59774874 -117199266 + Cheshire DNA MER1_type 50 2030 -390 2411 75 0 3 chrX 59774874 59775179 -117198961 + AluY SINE Alu 2 305 -6 8846 183 85 76 chrX 59775179 59775574 -117198566 + Cheshire DNA MER1_type 2030 2420 0 1993 184 55 6 chrX 59775828 59776176 -117197964 + MLT1A1 LTR MaLR 1 365 0 216 86 0 0 chrX 59776659 59776694 -117197446 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2009 119 0 42 chrX 59777105 59777416 -117196724 + AluSq SINE Alu 1 298 -15 180 311 39 29 chrX 59777737 59777840 -117196300 + L3 LINE CR1 197 300 -1277 379 153 419 16 chrX 59777947 59778071 -117196069 + MER5B DNA MER1_type 4 177 -1 551 215 207 0 chrX 59778165 59778300 -117195840 - MER5A DNA MER1_type -18 171 9 830 321 192 31 chrX 59778307 59778826 -117195314 + L3 LINE CR1 498 932 -645 1911 122 35 17 chrX 59778826 59779113 -117195027 + AluSx SINE Alu 1 292 -20 830 321 192 31 chrX 59779113 59779505 -117194635 + L3 LINE CR1 932 1556 -21 769 208 68 42 chrX 59780058 59780211 -117193929 - Charlie5 DNA MER1_type 0 2624 2460 2203 82 3 24 chrX 59780211 59780504 -117193636 + AluSg SINE Alu 8 294 -16 769 208 68 42 chrX 59780504 59780615 -117193525 - Charlie5 DNA MER1_type -164 2460 2353 857 160 97 16 chrX 59780621 59780814 -117193326 - Charlie5 DNA MER1_type -2491 121 1 21 36 0 0 chrX 59781167 59781195 -117192945 + AT_rich Low_complexity Low_complexity 1 28 0 503 246 80 48 chrX 59782163 59782350 -117191790 - MIR SINE MIR -55 207 15 25 0 0 0 chrX 59782857 59782882 -117191258 + AT_rich Low_complexity Low_complexity 1 25 0 1367 184 24 31 chrX 59783230 59783518 -117190622 + AluJb SINE Alu 1 286 -26 2137 110 3 0 chrX 59783804 59784104 -117190036 + AluSx SINE Alu 1 301 -11 320 305 113 13 chrX 59784475 59784626 -117189514 + MIR3 SINE MIR 42 207 -1 2569 45 0 3 chrX 59785582 59785894 -117188246 + AluY SINE Alu 1 311 0 519 200 46 23 chrX 59786031 59786161 -117187979 - MER94 DNA DNA -1 133 1 2139 80 0 0 chrX 59786512 59786788 -117187352 + AluSx SINE Alu 1 276 -36 282 29 0 0 chrX 59786808 59786843 -117187297 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2131 93 0 0 chrX 59786987 59787301 -117186839 + AluSg SINE Alu 1 314 0 497 241 146 35 chrX 59788121 59788320 -117185820 + MIR SINE MIR 38 258 -4 501 238 63 0 chrX 59788325 59788451 -117185689 - MER94 DNA DNA 0 134 1 303 228 42 152 chrX 59791395 59791500 -117182640 - L2 LINE L2 -5 3308 3242 2295 70 3 0 chrX 59791500 59791799 -117182341 + AluSx SINE Alu 10 309 -3 303 228 42 152 chrX 59791799 59791930 -117182210 - L2 LINE L2 -71 3242 3098 214 236 181 14 chrX 59792053 59792125 -117182015 - L2 LINE L2 -243 3070 2987 401 209 214 130 chrX 59792222 59792614 -117181526 + L2 LINE L2 2874 3298 -15 573 55 0 0 chrX 59793004 59793077 -117181063 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 2021 101 7 0 chrX 59793077 59793355 -117180785 - AluSg SINE Alu -21 289 10 294 217 51 65 chrX 59793632 59793687 -117180453 + L1P LINE L1 5254 5308 -860 2106 98 6 22 chrX 59793687 59794002 -117180138 + AluSg SINE Alu 1 310 0 294 217 51 65 chrX 59794002 59794084 -117180056 + L1P LINE L1 5308 5389 -779 2231 81 3 16 chrX 59794211 59794518 -117179622 + AluSq SINE Alu 1 303 -10 577 264 104 68 chrX 59794546 59794661 -117179479 + L1ME4a LINE L1 5444 5553 -568 2218 100 0 0 chrX 59794661 59794960 -117179180 - AluSc SINE Alu -8 301 3 577 264 104 68 chrX 59794960 59795248 -117178892 + L1ME4a LINE L1 5553 5871 -250 2224 96 0 0 chrX 59795248 59795549 -117178591 - AluSx SINE Alu -11 301 1 577 264 104 68 chrX 59795549 59795632 -117178508 + L1ME4a LINE L1 5871 5949 -172 2339 76 0 3 chrX 59795672 59795974 -117178166 - AluSx SINE Alu -3 309 9 1923 114 14 0 chrX 59796362 59796651 -117177489 - AluSx SINE Alu -14 298 6 188 364 18 55 chrX 59796939 59797104 -117177036 - L2 LINE L2 -221 3051 2893 197 338 97 28 chrX 59797217 59797362 -117176778 + L2 LINE L2 3117 3271 -1 339 309 0 81 chrX 59797370 59797506 -117176634 - L2 LINE L2 -513 2801 2677 2216 92 0 13 chrX 59797580 59797894 -117176246 - AluSx SINE Alu -2 310 1 203 300 0 43 chrX 59798187 59798257 -117175883 - L2 LINE L2 0 3272 3206 287 357 62 29 chrX 59799330 59799571 -117174569 + L2 LINE L2 112 360 -2954 362 320 32 8 chrX 59799609 59799734 -117174406 + MER5A DNA MER1_type 44 171 -18 383 267 126 92 chrX 59799774 59799980 -117174160 - MIR SINE MIR 0 262 50 252 0 0 0 chrX 59800188 59800216 -117173924 + (T)n Simple_repeat Simple_repeat 1 28 0 1106 105 0 0 chrX 59800233 59800386 -117173754 - AluSq SINE Alu -158 155 3 1379 87 0 15 chrX 59800514 59800710 -117173430 + AluY SINE Alu 115 307 -4 343 221 19 161 chrX 59800759 59800915 -117173225 - MIR SINE MIR -54 154 23 437 281 27 14 chrX 59801121 59801267 -117172873 + L3b LINE CR1 1107 1254 -329 473 287 30 24 chrX 59802347 59802514 -117171626 + MIR3 SINE MIR 33 200 -8 480 281 0 8 chrX 59805057 59805178 -117168962 + MIR SINE MIR 33 152 -110 428 293 38 25 chrX 59806119 59806276 -117167864 - MER103 DNA DNA -7 159 1 203 315 20 67 chrX 59806947 59807096 -117167044 + MIR SINE MIR 77 218 -44 192 168 307 50 chrX 59807557 59807658 -117166482 - MIR3 SINE MIR -19 189 63 195 274 0 0 chrX 59807702 59807753 -117166387 - MIR SINE MIR -74 134 84 230 296 34 34 chrX 59808231 59808319 -117165821 - MIR3 SINE MIR -9 199 112 192 268 0 36 chrX 59810069 59810125 -117164015 - MIR3 SINE MIR -54 154 101 2202 98 0 31 chrX 59811047 59811365 -117162775 - AluSc SINE Alu 0 309 2 192 311 81 0 chrX 59811441 59811515 -117162625 - L2 LINE L2 -5 3308 3229 182 281 158 24 chrX 59815232 59815314 -117158826 - MIR SINE MIR -59 149 57 500 275 17 51 chrX 59815329 59815507 -117158633 - MIR3 SINE MIR -5 203 32 294 238 16 0 chrX 59815509 59815572 -117158568 - MIR3 SINE MIR -52 156 93 222 347 0 13 chrX 59816490 59816565 -117157575 - L2 LINE L2 -6 3266 3193 252 0 0 0 chrX 59818586 59818614 -117155526 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2267 84 0 16 chrX 59819506 59819816 -117154324 + AluSp SINE Alu 1 305 -8 2014 116 41 0 chrX 59820674 59820968 -117153172 + AluSx SINE Alu 1 306 -6 693 180 52 82 chrX 59823897 59824091 -117150049 + MLT1E2 LTR MaLR 1 188 -438 731 116 50 16 chrX 59824121 59824242 -117149898 + FLAM_C SINE Alu 5 129 -14 1607 190 50 62 chrX 59824245 59824403 -117149737 + MLT1E2 LTR MaLR 235 394 -232 2050 83 6 71 chrX 59824403 59824728 -117149412 - AluSp SINE Alu -9 304 1 1607 190 50 62 chrX 59824728 59824953 -117149187 + MLT1E2 LTR MaLR 394 613 -13 407 250 0 22 chrX 59825188 59825280 -117148860 + MER21B LTR ERV1 3 92 -771 2333 78 0 0 chrX 59825301 59825594 -117148546 + AluSc SINE Alu 1 293 -16 2154 210 75 124 chrX 59825596 59826344 -117147796 + MER21B LTR ERV1 24 724 -139 300 53 0 0 chrX 59826344 59826382 -117147758 + (GGATG)n Simple_repeat Simple_repeat 5 42 0 2154 210 75 124 chrX 59826382 59826505 -117147635 + MER21B LTR ERV1 724 852 -11 181 365 0 0 chrX 59826523 59826586 -117147554 + L2 LINE L2 3208 3270 -2 443 229 0 7 chrX 59826846 59826986 -117147154 + (CCCTAA)n Simple_repeat Simple_repeat 1 139 0 219 355 0 6 chrX 59827086 59827255 -117146885 + (ACTTG)n Simple_repeat Simple_repeat 5 172 0 204 320 13 13 chrX 59827853 59828003 -117146137 + (ACTTG)n Simple_repeat Simple_repeat 4 153 0 255 326 6 6 chrX 59828067 59828245 -117145895 + (ACTTG)n Simple_repeat Simple_repeat 2 179 0 1038 165 0 0 chrX 59828838 59829008 -117145132 - AluJ SINE Alu -10 302 133 257 0 30 0 chrX 59829008 59829041 -117145099 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1778 139 4 7 chrX 59829041 59829322 -117144818 - AluSg SINE Alu -30 280 1 254 98 24 0 chrX 59829340 59829381 -117144759 - MADE1 DNA Mariner 0 80 39 771 177 39 0 chrX 59829381 59829511 -117144629 - AluJ SINE Alu -176 136 2 273 183 0 0 chrX 59829537 59829597 -117144543 + (CCCTAA)n Simple_repeat Simple_repeat 5 64 0 346 216 0 8 chrX 59829702 59829794 -117144346 + L1MC/D LINE L1 3668 3754 -2392 1089 204 0 0 chrX 59829804 59829980 -117144160 + MER8 DNA MER2_type 1 176 -63 2168 96 7 0 chrX 59830079 59830370 -117143770 + AluSp SINE Alu 1 293 -20 458 299 206 15 chrX 59830416 59830814 -117143326 + L1MC4 LINE L1 7373 7846 -196 267 253 24 0 chrX 59830850 59830933 -117143207 + L1MC4 LINE L1 7956 8040 -2 419 282 23 88 chrX 59831116 59831378 -117142762 - TAR1 Satellite telomeric -136 1975 1731 2092 89 4 7 chrX 59831541 59831821 -117142319 + AluSx SINE Alu 21 299 -13 1358 203 66 44 chrX 59831888 59832427 -117141713 + L1MC/D LINE L1 4898 5448 -872 2194 106 0 3 chrX 59832427 59832720 -117141420 + AluSq SINE Alu 2 293 -20 1358 203 66 44 chrX 59832720 59832853 -117141287 + L1MC/D LINE L1 5448 5577 -743 2606 127 52 15 chrX 59832853 59833290 -117140850 + MER34C LTR ERV1 2 455 -130 2217 98 0 7 chrX 59833290 59833480 -117140660 - AluSx SINE Alu 0 323 134 2174 82 3 60 chrX 59833480 59833816 -117140324 - AluSp SINE Alu 0 313 1 2217 98 0 7 chrX 59833816 59833950 -117140190 - AluSx SINE Alu -189 134 1 1452 109 14 0 chrX 59833966 59834177 -117139963 - MER31A LTR ERV1 -9 476 263 2426 94 0 0 chrX 59834192 59834501 -117139639 + AluSg SINE Alu 2 310 0 1706 168 14 14 chrX 59834593 59834890 -117139250 + AluJo SINE Alu 1 297 -15 758 221 20 0 chrX 59835116 59835265 -117138875 + LTR51 LTR ERV1 236 387 -284 2578 201 48 70 chrX 59835269 59836001 -117138139 - MER50 LTR ERV1 -9 725 10 672 244 85 6 chrX 59836007 59836237 -117137903 + LTR51 LTR ERV1 380 838 -85 2388 91 13 0 chrX 59836890 59837199 -117136941 - AluSp SINE Alu 0 313 1 1784 59 32 16 chrX 59837235 59837488 -117136652 + L1MA1 LINE L1 6046 6302 0 2225 231 2 59 chrX 59838331 59838853 -117135287 + L1MD1 LINE L1 16 506 -6034 4421 121 7 57 chrX 59838853 59839578 -117134562 + LTR8 LTR ERV1 1 689 -2 2225 231 2 59 chrX 59839578 59839613 -117134527 + L1MD1 LINE L1 506 541 -5999 3482 155 47 38 chrX 59839614 59840322 -117133818 + LTR8A LTR ERV1 14 727 0 1111 233 9 0 chrX 59840322 59840537 -117133603 + HUERS-P1 LTR ERV1 1 217 -6046 9212 162 36 17 chrX 59840559 59842129 -117132011 + L1MA2 LINE L1 587 2186 -5379 * 16564 154 17 14 chrX 59842111 59842426 -117131714 + L1MA2 LINE L1 3371 3683 -4040 2506 87 3 0 chrX 59842426 59842735 -117131405 + AluSp SINE Alu 1 310 -3 16564 154 17 14 chrX 59842735 59846750 -117127390 + L1MA2 LINE L1 3683 7723 0 5110 201 95 75 chrX 59846830 59847948 -117126192 + L1MD1 LINE L1 3939 5033 -1507 841 182 0 0 chrX 59847948 59848080 -117126060 - FLAM_A SINE Alu -1 132 1 5110 201 95 75 chrX 59848080 59848560 -117125580 + L1MD1 LINE L1 5033 5590 -950 6963 51 10 82 chrX 59848560 59850396 -117123744 - SVA Other Other -645 1386 3 5110 201 95 75 chrX 59850396 59850604 -117123536 + L1MD1 LINE L1 5590 5792 -748 719 142 0 35 chrX 59850604 59850851 -117123289 + AluJb SINE Alu 1 311 -1 3106 187 41 87 chrX 59850881 59851756 -117122384 + L1MD1 LINE L1 5779 6613 -23 2091 80 69 7 chrX 59851761 59852037 -117122103 + AluSg SINE Alu 7 299 -11 27 49 0 0 chrX 59852037 59852078 -117122062 + AT_rich Low_complexity Low_complexity 1 41 0 286 316 20 0 chrX 59852097 59852195 -117121945 - MIR3 SINE MIR -51 157 58 2084 106 55 0 chrX 59852452 59852745 -117121395 - AluSx SINE Alu -3 309 1 2333 97 0 0 chrX 59852756 59853074 -117121066 - AluSx SINE Alu 0 312 1 1905 138 38 0 chrX 59853106 59853397 -117120743 - AluSx SINE Alu -10 302 1 208 387 59 0 chrX 59853586 59853705 -117120435 - L2 LINE L2 -969 2345 2220 1920 133 10 24 chrX 59854093 59854387 -117119753 + AluJo SINE Alu 1 290 -22 2563 60 3 3 chrX 59854489 59854791 -117119349 - AluSp SINE Alu -11 302 1 1694 160 17 31 chrX 59855347 59855641 -117118499 - AluJo SINE Alu -15 297 8 313 339 68 17 chrX 59855833 59856010 -117118130 - MIR SINE MIR -65 197 12 733 158 0 0 chrX 59857165 59857279 -117116861 + FLAM_C SINE Alu 2 115 -28 240 322 42 0 chrX 59857579 59857697 -117116443 + L2 LINE L2 2708 2830 -484 389 249 158 72 chrX 59857779 59857964 -117116176 + L2 LINE L2 2991 3207 -106 2459 71 0 0 chrX 59857964 59858287 -117115853 + AluY SINE Alu 2 311 0 389 249 158 72 chrX 59858287 59858366 -117115774 + L2 LINE L2 3207 3278 -35 690 211 0 0 chrX 59858376 59858504 -117115636 - FLAM_C SINE Alu -15 128 1 2275 110 7 0 chrX 59859042 59859350 -117114790 + AluSx SINE Alu 1 310 -2 824 149 8 22 chrX 59860078 59860212 -117113928 - FLAM_C SINE Alu -11 132 1 180 0 0 0 chrX 59860362 59860382 -117113758 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 2067 119 0 42 chrX 59860878 59861188 -117112952 - AluSx SINE Alu -15 297 1 1998 143 7 0 chrX 59861217 59861504 -117112636 + AluSx SINE Alu 1 289 -23 1484 133 97 20 chrX 59861707 59862007 -117112133 + MER33 DNA MER1_type 1 323 -1 1110 137 0 0 chrX 59862357 59862518 -117111622 - AluSg/x SINE Alu -9 301 141 351 230 0 0 chrX 59862686 59862773 -117111367 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 2376 80 0 0 chrX 59862773 59863061 -117111079 - AluSc SINE Alu -20 289 2 2322 92 3 0 chrX 59864301 59864605 -117109535 + AluSg SINE Alu 1 305 -5 441 221 138 14 chrX 59864787 59864932 -117109208 + MIR SINE MIR 66 228 -34 1095 166 0 0 chrX 59865123 59865286 -117108854 - AluJb SINE Alu -23 289 127 22 0 0 0 chrX 59866996 59867018 -117107122 + AT_rich Low_complexity Low_complexity 1 22 0 1961 158 26 0 chrX 59867347 59867650 -117106490 + AluJb SINE Alu 1 311 -1 3264 227 74 59 chrX 59917682 59920586 -117053554 - L1MCb LINE L1 -2576 3988 799 500 180 33 47 chrX 59922372 59922522 -117051618 + L1ME2 LINE L1 5680 5827 -335 924 217 78 36 chrX 59922522 59922831 -117051309 - L1MC4a LINE L1 -413 7395 7074 289 216 25 1 chrX 59922844 59922924 -117051216 - L1MC4 LINE L1 -777 7184 7102 883 231 83 111 chrX 59922986 59923035 -117051105 - L1MC4 LINE L1 -1883 5925 5876 1331 126 35 31 chrX 59923035 59923296 -117050844 + L1MA9 LINE L1 6050 6311 -1 883 231 83 111 chrX 59923296 59923875 -117050265 - L1MC4 LINE L1 -1932 5876 5315 10206 27 0 0 chrX 59923885 59925860 -117048280 - L1PA4 LINE L1 -3 6152 4178 1447 118 37 0 chrX 59926031 59926276 -117047864 - L1MA7 LINE L1 -12 6279 6026 1854 125 67 6 chrX 59926277 59926589 -117047551 + L1MA7 LINE L1 5610 5940 -351 1609 178 21 28 chrX 59926604 59926891 -117047249 + AluJo SINE Alu 3 287 -25 509 239 50 61 chrX 59926966 59927146 -117046994 - L1ME3A LINE L1 -4 6166 5989 1869 98 4 0 chrX 59927216 59927472 -117046668 - L1PA13 LINE L1 -385 5783 5527 2723 70 0 3 chrX 59927472 59927829 -117046311 + L1PA13 LINE L1 5796 6152 -11 256 245 168 26 chrX 59927865 59928020 -117046120 - L1 LINE L1 -1185 4961 4785 619 274 47 42 chrX 59928030 59928242 -117045898 - L2 LINE L2 -573 2741 2529 366 282 43 54 chrX 59928257 59928534 -117045606 - L1 LINE L1 -1365 4781 4508 23 68 0 0 chrX 59928634 59928678 -117045462 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chrX 59928740 59928784 -117045356 + AT_rich Low_complexity Low_complexity 1 44 0 1978 144 25 0 chrX 59928990 59929275 -117044865 + AluSx SINE Alu 1 292 -20 411 273 14 32 chrX 59929278 59929468 -117044672 - L1ME3A LINE L1 -305 5865 5678 651 229 18 55 chrX 59929519 59929595 -117044545 - L2 LINE L2 0 3313 3236 1319 172 30 109 chrX 59929595 59929991 -117044149 - MLT1A1 LTR MaLR 0 365 1 651 229 18 55 chrX 59929991 59930132 -117044008 - L2 LINE L2 -77 3236 3104 2239 100 3 3 chrX 59930159 59930459 -117043681 - AluSp SINE Alu -13 300 1 2179 136 6 6 chrX 59930459 59930804 -117043336 + MLT2C1 LTR ERVL 2 346 -51 202 102 102 0 chrX 59930816 59930865 -117043275 + A-rich Low_complexity Low_complexity 2 55 0 248 171 0 0 chrX 59930910 59930951 -117043189 + MLT2C1 LTR ERVL 357 397 0 566 273 14 0 chrX 59930953 59931096 -117043044 + HERVL-C1 LTR ERVL 3 147 -5507 * 15515 170 19 29 chrX 59931091 59931591 -117042549 + ERVL-C2 LTR ERVL 1947 2451 -3313 708 151 0 0 chrX 59931591 59931697 -117042443 + U6 snRNA snRNA 2 107 0 751 116 0 31 chrX 59931698 59931827 -117042313 + L1MA6 LINE L1 6166 6290 -10 15515 170 19 29 chrX 59931827 59934595 -117039545 + ERVL-C2 LTR ERVL 2451 5164 -600 715 205 0 8 chrX 59934595 59934717 -117039423 + FLAM_A SINE Alu 1 121 -12 15515 170 19 29 chrX 59934717 59934947 -117039193 + ERVL-C2 LTR ERVL 5164 5395 -369 1972 89 63 4 chrX 59934966 59935236 -117038904 - AluSp SINE Alu -27 286 1 1095 183 154 29 chrX 59935301 59935612 -117038528 + ERVL-C2 LTR ERVL 5406 5755 -9 1636 212 46 46 chrX 59935613 59935642 -117038498 + MLT2C2 LTR ERVL 1 28 -492 2222 123 3 0 chrX 59935642 59935950 -117038190 + AluSx SINE Alu 1 309 -3 1636 212 46 46 chrX 59935950 59936352 -117037788 + MLT2C2 LTR ERVL 28 483 -37 288 163 228 16 chrX 59936534 59936546 -117037594 - L1M4 LINE L1 -2912 3234 3226 318 20 41 0 chrX 59936546 59936595 -117037545 - L1MD2 LINE L1 -2 6357 6307 288 163 228 16 chrX 59936595 59936705 -117037435 - L1M4 LINE L1 -2920 3226 3086 6274 143 16 10 chrX 59936825 59938831 -117035309 - L1MA2 LINE L1 -4 7719 5696 210 37 0 0 chrX 59938831 59938858 -117035282 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 41743 45 0 1 chrX 59938875 59945029 -117029111 - L1PA4 LINE L1 -8 6147 1 7578 202 23 14 chrX 59945029 59945614 -117028526 - L1MA2 LINE L1 -1858 5707 5129 1852 199 3 0 chrX 59945614 59945925 -117028215 - AluSx SINE Alu 0 312 1 7578 202 23 14 chrX 59945925 59947185 -117026955 - L1MA2 LINE L1 -2436 5129 3845 439 73 0 0 chrX 59947183 59947251 -117026889 + L1M1 LINE L1 2265 2332 -5233 * 37756 75 6 6 chrX 59947252 59953408 -117020732 + L1PA6 LINE L1 4 6154 0 309 70 0 0 chrX 59953402 59953445 -117020695 + L1M1 LINE L1 2318 2360 -5205 * 495 183 9 0 chrX 59953477 59953590 -117020550 + L1M1 LINE L1 2337 2797 -4699 19500 162 31 4 chrX 59953596 59954473 -117019667 - L1MA2 LINE L1 -3719 3846 2994 207 0 0 0 chrX 59954473 59954496 -117019644 + (TG)n Simple_repeat Simple_repeat 2 24 0 19500 162 31 4 chrX 59954496 59957350 -117016790 - L1MA2 LINE L1 -4571 2994 14 2211 247 50 32 chrX 59957346 59958519 -117015621 - L1MDb LINE L1 -3104 3436 2242 * 2092 188 63 20 chrX 59958584 59959031 -117015109 + MLT1C LTR MaLR 2 467 0 306 256 1 0 chrX 59959059 59959148 -117014992 - L1MDb LINE L1 -4977 1563 1474 340 244 39 72 chrX 59959149 59959329 -117014811 - L2 LINE L2 -1935 1379 1206 183 80 0 0 chrX 59959382 59959407 -117014733 + (TG)n Simple_repeat Simple_repeat 2 26 0 820 246 49 10 chrX 59959788 59959991 -117014149 + MIR SINE MIR 15 225 -37 201 39 0 0 chrX 59960038 59960064 -117014076 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 2179 106 3 0 chrX 59960071 59960355 -117013785 - AluSg SINE Alu -25 285 1 425 271 133 13 chrX 59960959 59961110 -117013030 + MLT1I LTR MaLR 2 170 -239 601 136 0 0 chrX 59961117 59961205 -117012935 - FRAM SINE Alu -21 155 68 365 289 59 13 chrX 59961245 59961397 -117012743 + MLT1I LTR MaLR 244 402 -7 198 324 99 0 chrX 59961555 59961626 -117012514 + MIR3 SINE MIR 2 79 -129 872 166 22 0 chrX 59962015 59962196 -117011944 + L1MA8 LINE L1 6106 6290 -1 831 240 18 0 chrX 59962290 59962461 -117011679 + AluJo SINE Alu 116 289 -23 495 218 109 0 chrX 59962470 59962626 -117011514 + L1MB7 LINE L1 69 241 -6618 839 280 69 21 chrX 59962769 59963158 -117010982 + L1MB7 LINE L1 776 1183 -5672 1645 179 11 42 chrX 59963257 59963610 -117010530 - MLT1A1 LTR MaLR -23 342 1 1046 166 9 169 chrX 59963647 59964035 -117010105 + L1MB7 LINE L1 1188 1525 -5334 415 132 13 0 chrX 59964035 59964111 -117010029 + AluSc SINE Alu 233 309 0 1046 166 9 169 chrX 59964111 59964246 -117009894 + L1MB7 LINE L1 1525 1680 -5179 * 35663 38 5 0 chrX 59964244 59969621 -117004519 + L1PA3 LINE L1 747 6150 -5 4272 251 54 26 chrX 59969603 59969785 -117004355 + L1MB7 LINE L1 1637 1812 -5145 * 2040 205 48 70 chrX 59969785 59970352 -117003788 + MLT2B3 LTR ERVL 1 554 0 4272 251 54 26 chrX 59970352 59971020 -117003120 + L1MB7 LINE L1 1812 2460 -4497 1645 164 0 82 chrX 59971020 59971337 -117002803 + AluSq SINE Alu 3 293 -20 4272 251 54 26 chrX 59971337 59971943 -117002197 + L1MB7 LINE L1 2460 3048 -3909 1962 150 7 0 chrX 59971943 59972230 -117001910 - AluSx SINE Alu -22 290 2 4272 251 54 26 chrX 59972230 59973386 -117000754 + L1MB7 LINE L1 3048 4408 -2549 1729 177 3 3 chrX 59973394 59973744 -117000396 - L1 LINE L1 -3600 2546 2197 391 222 10 0 chrX 59973747 59973846 -117000294 + L1MA4 LINE L1 5061 5160 -986 289 44 133 0 chrX 59973849 59973894 -117000246 - MADE1 DNA Mariner -1 79 29 1584 146 7 0 chrX 59973894 59974182 -116999958 + L1MA4 LINE L1 5284 5573 -727 3054 191 74 8 chrX 59974190 59974203 -116999937 + L1MB7 LINE L1 5998 6009 -986 3976 114 11 9 chrX 59974203 59974851 -116999289 + L1MA4 LINE L1 5652 6300 0 3054 191 74 8 chrX 59974851 59975634 -116998506 + L1MB7 LINE L1 6009 6845 -150 6821 159 20 37 chrX 59975634 59977805 -116996335 - L1PA13 LINE L1 -3 6160 4000 503 206 7 15 chrX 59977815 59977951 -116996189 + L1MB8 LINE L1 6029 6163 -15 584 182 0 0 chrX 59978155 59978254 -116995886 + AluJb SINE Alu 203 301 -11 2209 108 44 0 chrX 59978254 59978551 -116995589 + AluSx SINE Alu 1 310 -2 286 240 128 97 chrX 59979581 59979777 -116994363 + L2 LINE L2 2828 3029 -243 2435 64 0 0 chrX 59979881 59980179 -116993961 - AluY SINE Alu -13 298 1 245 355 0 0 chrX 59980212 59980288 -116993852 + L2 LINE L2 3197 3272 0 2061 142 0 13 chrX 59980377 59980694 -116993446 - AluSq SINE Alu 0 313 1 651 296 124 13 chrX 59980728 59980954 -116993186 - MIR SINE MIR -1 261 11 583 205 32 16 chrX 59980942 59981095 -116993045 - MIR3 SINE MIR -38 170 15 * 2365 64 0 0 chrX 59981534 59981865 -116992275 + AluY SINE Alu 1 331 0 212 352 56 0 chrX 59981865 59981936 -116992204 - MIR SINE MIR -158 104 30 264 250 36 48 chrX 59982134 59982218 -116991922 + L2 LINE L2 3155 3237 -35 25 0 0 0 chrX 59982237 59982262 -116991878 + AT_rich Low_complexity Low_complexity 1 25 0 432 270 159 6 chrX 59982376 59982539 -116991601 + MIR SINE MIR 74 261 -1 1150 167 9 47 chrX 59983458 59983673 -116990467 + AluJb SINE Alu 85 291 -21 227 310 310 14 chrX 59983715 59984070 -116990070 - L2 LINE L2 -681 2633 2174 598 203 175 14 chrX 59984584 59984727 -116989413 - MER5A DNA MER1_type 0 189 24 675 157 193 0 chrX 59984858 59985024 -116989116 + MER5C DNA MER1_type 127 324 0 22 0 0 30 chrX 59987570 59987584 -116986556 + AT_rich Low_complexity Low_complexity 1 14 -18 960 121 14 0 chrX 59987584 59987724 -116986416 + L1PB4 LINE L1 6015 6156 0 22 0 0 30 chrX 59987724 59987742 -116986398 + AT_rich Low_complexity Low_complexity 14 32 0 221 57 29 0 chrX 59988784 59988819 -116985321 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 188 210 0 16 chrX 59989402 59989464 -116984676 + (TAA)n Simple_repeat Simple_repeat 1 61 0 232 180 20 0 chrX 59990353 59990403 -116983737 - LTR66 LTR ERVL -166 444 394 605 33 43 0 chrX 59996435 59996527 -116977613 + (TC)n Simple_repeat Simple_repeat 1 96 0 2139 109 20 3 chrX 59996527 59996820 -116977320 - AluSx SINE Alu -14 298 1 232 333 30 0 chrX 59998250 59998316 -116975824 + MIR3 SINE MIR 103 170 -38 1665 143 99 4 chrX 59999180 59999452 -116974688 - AluSx SINE Alu -14 298 1 296 247 32 175 chrX 60000550 60000858 -116973282 - L2 LINE L2 -68 3204 2941 181 205 26 0 chrX 60001098 60001137 -116973003 + L2 LINE L2 2937 2976 -337 203 222 0 48 chrX 60001139 60001202 -116972938 + CT-rich Low_complexity Low_complexity 1 60 0 184 275 14 58 chrX 60001368 60001437 -116972703 + L2 LINE L2 3246 3311 -2 2094 129 0 7 chrX 60002483 60002777 -116971363 + AluJb SINE Alu 1 292 -20 405 336 0 8 chrX 60002851 60002976 -116971164 + MIR3 SINE MIR 77 200 -8 843 107 168 0 chrX 60002982 60003161 -116970979 - AluSg/x SINE Alu 0 340 140 1025 97 8 17 chrX 60003161 60003399 -116970741 + (TTCC)n Simple_repeat Simple_repeat 1 236 0 1363 140 144 12 chrX 60003401 60003644 -116970496 - AluSg1 SINE Alu -34 275 1 431 290 15 15 chrX 60004785 60004916 -116969224 - MIR3 SINE MIR -9 199 69 312 27 0 0 chrX 60005240 60005277 -116968863 + (CA)n Simple_repeat Simple_repeat 2 38 0 2405 92 0 0 chrX 60005496 60005799 -116968341 - AluSx SINE Alu -9 303 1 2426 97 0 0 chrX 60005803 60006144 -116967996 - AluSg SINE Alu 0 341 1 208 355 136 18 chrX 60006794 60006904 -116967236 - L2 LINE L2 -17 3255 3133 180 0 0 0 chrX 60007106 60007126 -116967014 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1718 88 44 0 chrX 60007430 60007656 -116966484 - AluSg SINE Alu -20 290 55 1133 58 7 0 chrX 60007659 60007798 -116966342 - AluSg SINE Alu -170 140 1 1030 183 52 0 chrX 60008641 60008832 -116965308 - MER3 DNA MER1_type -8 201 1 13631 170 17 7 chrX 60009955 60012379 -116961761 - L1PA13 LINE L1 -11 7590 5192 405 0 0 0 chrX 60012379 60012424 -116961716 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1975 124 3 11 chrX 60012424 60012707 -116961433 - AluSx SINE Alu -31 281 1 13631 170 17 7 chrX 60012707 60013487 -116960653 - L1PA13 LINE L1 -2408 5193 4347 213 39 0 0 chrX 60013490 60013516 -116960624 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 16671 40 1 1 chrX 60013516 60016190 -116957950 - L1PA5 LINE L1 -13 6141 3468 6518 259 22 16 chrX 60016192 60017281 -116956859 - L1PA13 LINE L1 -3230 4354 3248 2026 137 0 48 chrX 60017281 60017596 -116956544 + AluSx SINE Alu 1 300 -12 6518 259 22 16 chrX 60017596 60018389 -116955751 - L1PA13 LINE L1 -4336 3248 2461 4065 190 92 12 chrX 60018442 60019972 -116954168 - L1PA13 LINE L1 -5838 1743 1 512 284 132 54 chrX 60019988 60020284 -116953856 + L3 LINE CR1 1220 1538 -39 189 0 0 0 chrX 60020752 60020773 -116953367 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 210 119 24 24 chrX 60023063 60023105 -116951035 + (TAA)n Simple_repeat Simple_repeat 3 44 0 463 253 71 80 chrX 60023188 60023359 -116950781 + MIR SINE MIR 39 209 -53 204 40 0 0 chrX 60023359 60023384 -116950756 + (TG)n Simple_repeat Simple_repeat 2 26 0 463 253 71 80 chrX 60023384 60023437 -116950703 + MIR SINE MIR 209 261 -1 529 303 31 6 chrX 60024788 60024950 -116949190 - MIR SINE MIR -48 214 49 2440 93 0 3 chrX 60025163 60025474 -116948666 + AluSx SINE Alu 1 310 -2 181 196 71 18 chrX 60025774 60025830 -116948310 - MIR SINE MIR -97 165 107 2593 64 0 3 chrX 60027981 60028295 -116945845 + AluSq SINE Alu 1 313 0 514 262 83 30 chrX 60028611 60028779 -116945361 - MIR SINE MIR -7 255 79 1518 101 0 18 chrX 60028839 60029067 -116945073 - L1MA4 LINE L1 -6 6294 6071 1611 234 81 54 chrX 60029237 60029924 -116944216 + LTR51 LTR ERV1 177 890 -33 332 129 113 0 chrX 60029971 60030033 -116944107 - AluJ/FRAM SINE Alu -2 300 232 429 273 14 35 chrX 60030039 60030182 -116943958 - MIR SINE MIR -44 218 79 1483 113 113 0 chrX 60030252 60030464 -116943676 - AluSx SINE Alu -76 236 1 1780 130 33 33 chrX 60031913 60032214 -116941926 - AluJo SINE Alu -11 301 1 409 314 57 13 chrX 60032250 60032409 -116941731 - MIR SINE MIR -50 212 47 218 268 24 8 chrX 60032930 60033003 -116941137 + GA-rich Low_complexity Low_complexity 2 129 0 192 40 0 0 chrX 60033487 60033512 -116940628 + (ACTG)n Simple_repeat Simple_repeat 4 28 0 189 269 159 50 chrX 60034161 60034343 -116939797 + L2 LINE L2 2883 3084 -188 25 51 0 0 chrX 60034592 60034631 -116939509 + AT_rich Low_complexity Low_complexity 1 39 0 214 193 35 18 chrX 60036121 60036178 -116937962 + (TA)n Simple_repeat Simple_repeat 1 58 0 1432 236 52 68 chrX 60036195 60036766 -116937374 + MER68 LTR ERV1 1 562 0 222 273 109 19 chrX 60036769 60036886 -116937254 - MIR SINE MIR -80 182 16 186 261 43 0 chrX 60036923 60036969 -116937171 + MIR3 SINE MIR 142 189 -19 198 0 0 0 chrX 60038354 60038376 -116935764 + (CA)n Simple_repeat Simple_repeat 2 23 0 2355 70 0 70 chrX 60038516 60038844 -116935296 + AluY SINE Alu 1 305 -6 261 235 165 35 chrX 60038978 60039063 -116935077 + MIR3 SINE MIR 113 208 0 264 205 24 72 chrX 60039965 60040048 -116934092 - MIR SINE MIR -75 187 109 243 0 0 0 chrX 60040490 60040517 -116933623 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 40863 33 22 1 chrX 60040520 60046538 -116927602 - L1PA2 LINE L1 -7 6148 3 7972 206 38 31 chrX 60046682 60047651 -116926489 + L1MC3 LINE L1 5606 6567 -1218 1000 42 0 58 chrX 60047651 60047842 -116926298 + (TA)n Simple_repeat Simple_repeat 1 180 0 7972 206 38 31 chrX 60047842 60049028 -116925112 + L1MC3 LINE L1 6567 7775 -10 414 287 17 17 chrX 60049144 60049259 -116924881 + MIR3 SINE MIR 71 185 -23 563 116 0 0 chrX 60049667 60049753 -116924387 + L1PA11 LINE L1 6009 6094 -80 358 270 17 46 chrX 60050344 60050518 -116923622 + GA-rich Low_complexity Low_complexity 2 170 0 882 145 0 0 chrX 60050571 60050702 -116923438 - FLAM_C SINE Alu -2 131 1 1021 148 0 0 chrX 60051174 60051329 -116922811 - AluJb SINE Alu -18 294 140 1223 201 94 30 chrX 60051333 60051706 -116922434 + L1M4 LINE L1 2390 2786 -3360 369 172 69 60 chrX 60051706 60051822 -116922318 + MIR3 SINE MIR 71 187 -21 734 216 64 20 chrX 60051971 60052175 -116921965 - L1ME1 LINE L1 -21 6145 5933 34 24 0 0 chrX 60052204 60052245 -116921895 + AT_rich Low_complexity Low_complexity 1 41 0 3639 132 18 3 chrX 60052339 60052955 -116921185 - L1MC2 LINE L1 -165 6179 5555 14532 128 30 18 chrX 60052979 60054819 -116919321 + L1M1 LINE L1 820 2702 -4863 1923 75 55 0 chrX 60054819 60054926 -116919214 + AluY SINE Alu 14 114 -201 210 91 0 0 chrX 60054926 60054959 -116919181 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1923 75 55 0 chrX 60054959 60055139 -116919001 + AluY SINE Alu 114 315 0 14532 128 30 18 chrX 60055139 60055815 -116918325 + L1M1 LINE L1 2702 3368 -4197 5375 186 40 8 chrX 60055814 60056878 -116917262 - L1M1 LINE L1 -6457 1108 12 * 2529 179 60 28 chrX 60056873 60057526 -116916614 - L1P LINE L1 -813 5333 4660 * 959 235 4 4 chrX 60057522 60057773 -116916367 - L1MC2 LINE L1 -816 5330 5080 * 1310 108 5 10 chrX 60057773 60057976 -116916164 + L1PA16 LINE L1 5964 6165 -1 668 195 103 5 chrX 60057979 60058164 -116915976 + L1MC3 LINE L1 7583 7785 0 2880 269 180 10 chrX 60058165 60058854 -116915286 - L1MC2 LINE L1 -1054 5092 4521 752 197 99 13 chrX 60058854 60059006 -116915134 - AluJo/FRAM SINE Alu -1 301 137 2208 112 0 0 chrX 60059007 60059294 -116914846 - AluSx SINE Alu -19 293 7 2880 269 180 10 chrX 60059294 60059659 -116914481 - L1MC2 LINE L1 -1625 4521 4219 2121 122 0 14 chrX 60059659 60059954 -116914186 + AluSx SINE Alu 1 291 -21 2880 269 180 10 chrX 60059954 60060280 -116913860 - L1MC2 LINE L1 -1927 4219 3474 1189 166 122 58 chrX 60060413 60060756 -116913384 + MLT1A1 LTR MaLR 1 365 0 188 237 0 0 chrX 60061151 60061196 -116912944 - MIR SINE MIR -49 159 114 22 35 0 0 chrX 60061756 60061785 -116912355 + AT_rich Low_complexity Low_complexity 1 29 0 359 349 91 6 chrX 60062027 60062046 -116912094 + MIR SINE MIR 18 34 -228 758 142 0 57 chrX 60062046 60062187 -116911953 + FLAM_C SINE Alu 1 133 0 359 349 91 6 chrX 60062187 60062342 -116911798 + MIR SINE MIR 34 207 -55 444 287 69 69 chrX 60062468 60062684 -116911456 - MIR SINE MIR -1 261 46 24 0 0 0 chrX 60063900 60063924 -116910216 + AT_rich Low_complexity Low_complexity 1 24 0 246 279 93 12 chrX 60064340 60064426 -116909714 - MIR SINE MIR -90 118 26 302 289 39 39 chrX 60064538 60064666 -116909474 + MIR SINE MIR 92 219 -43 206 236 18 55 chrX 60065148 60065203 -116908937 - MIR SINE MIR -119 89 37 255 268 14 28 chrX 60065212 60065283 -116908857 + L2 LINE L2 3187 3256 -57 183 243 0 0 chrX 60065470 60065507 -116908633 - L3 LINE CR1 -2 1575 1539 302 246 88 35 chrX 60065643 60065757 -116908383 - MIR SINE MIR -39 223 104 201 336 80 62 chrX 60066045 60066158 -116907982 - L2 LINE L2 -37 3235 3121 2335 61 0 0 chrX 60067173 60067451 -116906689 - AluY SINE Alu -13 298 21 545 272 33 17 chrX 60067453 60067633 -116906507 + MLT1E3 LTR MaLR 442 624 0 875 217 70 58 chrX 60068449 60068776 -116905364 + L1MD2 LINE L1 6028 6358 -1 13782 38 1 0 chrX 60068841 60071281 -116902859 - L1PA5 LINE L1 -6 6148 3708 192 40 0 0 chrX 60071942 60071967 -116902173 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 185 299 0 30 chrX 60072826 60072893 -116901247 - MIR SINE MIR -42 220 156 35756 42 1 1 chrX 60073315 60077909 -116896231 - L1PA3 LINE L1 -1395 4751 160 7441 33 1 1 chrX 60077909 60079315 -116894825 + L1PA3 LINE L1 4749 6154 -1 931 232 37 0 chrX 60079394 60079584 -116894556 + MIR SINE MIR 66 262 0 210 206 29 88 chrX 60079610 60079678 -116894462 + MIR3 SINE MIR 113 176 -32 4782 125 45 34 chrX 60079946 60080169 -116893971 + L1MA8 LINE L1 5223 5442 -849 1295 103 75 19 chrX 60080169 60080376 -116893764 + L1PA10 LINE L1 5938 6163 -5 4782 125 45 34 chrX 60080376 60080717 -116893423 + L1MA8 LINE L1 5442 5778 -513 333 0 0 0 chrX 60080717 60080754 -116893386 + (TG)n Simple_repeat Simple_repeat 2 38 0 4782 125 45 34 chrX 60080754 60081145 -116892995 + L1MA8 LINE L1 5778 6182 -109 366 258 65 0 chrX 60081146 60081239 -116892901 - MIR SINE MIR -87 121 23 2062 139 42 24 chrX 60081278 60081609 -116892531 - MER1B DNA MER1_type 0 337 1 2946 47 2 49 chrX 60082377 60082782 -116891358 + L1PA8 LINE L1 5784 6169 -3 186 311 182 30 chrX 60082990 60083122 -116891018 - MIR SINE MIR -108 154 3 277 284 91 0 chrX 60083672 60083760 -116890380 - L3 LINE CR1 -2 1575 1480 22 0 0 0 chrX 60084326 60084348 -116889792 + AT_rich Low_complexity Low_complexity 1 22 0 799 316 163 24 chrX 60084548 60085293 -116888847 - L2 LINE L2 -6 3266 2416 4214 204 71 42 chrX 60086287 60086657 -116887483 + L1M4 LINE L1 3896 4254 -1930 925 191 0 0 chrX 60086657 60086814 -116887326 + FRAM SINE Alu 5 161 -15 4214 204 71 42 chrX 60086814 60087975 -116886165 + L1M4 LINE L1 4254 5485 -699 566 288 41 29 chrX 60087978 60088294 -116885846 + L1PA15 LINE L1 1 320 -7261 740 129 21 14 chrX 60089437 60089577 -116884563 + L1PA15 LINE L1 2323 2463 -5111 2850 221 28 24 chrX 60089581 60090332 -116883808 + L1PA15 LINE L1 3502 4255 -3329 688 13 0 0 chrX 60090332 60090432 -116883708 + L1PA5 LINE L1 6067 6166 0 12682 201 53 27 chrX 60090439 60093762 -116880378 + L1PA15 LINE L1 4237 7603 0 3679 144 48 33 chrX 60093762 60094450 -116879690 + L1MB8 LINE L1 5476 6173 -5 606 303 118 31 chrX 60095355 60095678 -116878462 - L2 LINE L2 -18 3295 2945 738 215 23 96 chrX 60095686 60095946 -116878194 - L2 LINE L2 0 3313 3073 440 267 107 20 chrX 60096721 60096871 -116877269 + MIR SINE MIR 59 221 -41 739 231 96 44 chrX 60096883 60097112 -116877028 - MIR SINE MIR -14 248 8 299 234 78 26 chrX 60097172 60097249 -116876891 - MIR SINE MIR -180 82 2 290 303 213 33 chrX 60097262 60097473 -116876667 - MIR SINE MIR 0 262 14 253 258 45 0 chrX 60097685 60097774 -116876366 + CT-rich Low_complexity Low_complexity 2 94 0 419 295 47 108 chrX 60098090 60098462 -116875678 - L2 LINE L2 -2 3270 2922 256 281 37 44 chrX 60099132 60099267 -116874873 - MIR SINE MIR -11 251 118 788 189 0 8 chrX 60099272 60099404 -116874736 - FLAM_C SINE Alu 0 133 3 310 353 82 8 chrX 60102009 60102131 -116872009 - MIR3 SINE MIR -41 167 37 195 377 82 16 chrX 60102419 60102541 -116871599 - L2 LINE L2 -22 3250 3121 211 233 0 0 chrX 60102675 60102718 -116871422 + MIR SINE MIR 219 261 -1 243 311 49 0 chrX 60102737 60102798 -116871342 - L2 LINE L2 -93 3179 3116 772 238 11 26 chrX 60102845 60103034 -116871106 - MIR SINE MIR -1 261 76 756 215 62 6 chrX 60103071 60103248 -116870892 + MER90 LTR ERV1 3 189 -386 1579 188 16 26 chrX 60103257 60103462 -116870678 + MER90 LTR ERV1 314 517 -97 2058 158 91 17 chrX 60103462 60103823 -116870317 - MLT1B LTR MaLR -2 388 1 1579 188 16 26 chrX 60103823 60103921 -116870219 + MER90 LTR ERV1 517 614 0 624 205 113 7 chrX 60104225 60104376 -116869764 + MIR SINE MIR 93 259 -3 224 355 8 8 chrX 60105478 60105602 -116868538 + G-rich Low_complexity Low_complexity 4 127 0 419 111 0 14 chrX 60105767 60105839 -116868301 + (GGA)n Simple_repeat Simple_repeat 1 71 0 222 225 0 0 chrX 60105872 60105952 -116868188 + (CAG)n Simple_repeat Simple_repeat 1 80 0 252 143 0 0 chrX 60106275 60106317 -116867823 + (CGG)n Simple_repeat Simple_repeat 2 43 0 297 0 0 0 chrX 60108949 60108982 -116865158 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 105 0 0 chrX 60109751 60109789 -116864351 + L1MA3 LINE L1 6268 6305 0 8060 34 0 0 chrX 60110540 60111695 -116862445 + L1PA3 LINE L1 5001 6155 0 199 380 70 10 chrX 60112110 60112310 -116861830 + L3b LINE CR1 1253 1464 -119 226 152 0 0 chrX 60112477 60112510 -116861630 + MER58 DNA MER1_type 12 44 -297 2402 121 137 8 chrX 60113856 60114235 -116859905 - MSTA LTR MaLR 0 428 1 272 254 63 16 chrX 60114356 60114419 -116859721 - L2 LINE L2 -4 3268 3203 2580 123 62 8 chrX 60114566 60114966 -116859174 - MSTC LTR MaLR 0 428 7 1973 182 16 99 chrX 60115310 60115854 -116858286 - MLT1D LTR MaLR -6 499 1 498 188 79 0 chrX 60115876 60115977 -116858163 - L1MD2 LINE L1 -14 6345 6237 822 163 0 0 chrX 60116042 60116165 -116857975 - AluJb SINE Alu -189 123 1 2381 200 29 42 chrX 60116167 60116598 -116857542 - L1MD2 LINE L1 -245 6114 5679 203 53 0 53 chrX 60116598 60116636 -116857504 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1814 123 3 84 chrX 60116638 60116946 -116857194 - AluSx SINE Alu -29 283 1 2381 200 29 42 chrX 60116946 60117065 -116857075 - L1MD2 LINE L1 -681 5678 5568 4259 181 53 28 chrX 60117108 60118489 -116855651 - L1MDa LINE L1 -4213 2327 840 503 224 0 0 chrX 60118489 60118574 -116855566 - MER3 DNA MER1_type -100 109 25 2073 100 54 0 chrX 60119903 60120182 -116853958 - AluSx SINE Alu -18 294 1 2266 132 26 9 chrX 60120319 60120667 -116853473 - THE1A LTR MaLR -1 354 1 12579 94 8 0 chrX 60120667 60122235 -116851905 - THE1A-int LTR MaLR 0 1580 1 2601 102 11 8 chrX 60122235 60122589 -116851551 - THE1A LTR MaLR 0 355 1 200 205 0 0 chrX 60122600 60122639 -116851501 + (TG)n Simple_repeat Simple_repeat 1 39 0 338 170 27 89 chrX 60123698 60123810 -116850330 + MIR3 SINE MIR 94 198 -10 1919 145 22 38 chrX 60125015 60125332 -116848808 - AluJo SINE Alu 0 312 1 2074 141 0 13 chrX 60125478 60125791 -116848349 - AluSx SINE Alu -2 310 2 216 0 0 0 chrX 60126117 60126141 -116847999 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 187 266 16 16 chrX 60126456 60126520 -116847620 - MIR SINE MIR -62 146 83 180 111 0 0 chrX 60126599 60126626 -116847514 + (GA)n Simple_repeat Simple_repeat 1 27 0 369 0 0 0 chrX 60127398 60127439 -116846701 + (CA)n Simple_repeat Simple_repeat 1 41 0 245 288 0 27 chrX 60127569 60127642 -116846498 - MIR SINE MIR -135 127 57 555 16 0 0 chrX 60127933 60127997 -116846143 + (TG)n Simple_repeat Simple_repeat 1 64 0 231 188 0 0 chrX 60128938 60128986 -116845154 + (TA)n Simple_repeat Simple_repeat 2 49 0 180 333 217 0 chrX 60129985 60130105 -116844035 - L3 LINE CR1 -25 1552 1407 5460 157 19 22 chrX 60130136 60130828 -116843312 - L1MB3 LINE L1 -3 6180 5494 2342 84 3 7 chrX 60130828 60131137 -116843003 - AluSc SINE Alu -1 308 1 5460 157 19 22 chrX 60131137 60131524 -116842616 - L1MB3 LINE L1 -689 5494 5107 4336 138 1 8 chrX 60131519 60132224 -116841916 - L1MB3 LINE L1 -1437 4709 4010 * 1808 160 37 13 chrX 60132223 60132604 -116841536 - L1 LINE L1 -1534 4612 4223 * 5356 147 19 13 chrX 60132596 60133521 -116840619 - L1MC3 LINE L1 0 7785 6855 581 268 70 28 chrX 60133535 60133748 -116840392 - L3 LINE CR1 -246 1331 1110 236 232 244 12 chrX 60134041 60134123 -116840017 - MIR SINE MIR -78 130 30 945 133 11 39 chrX 60135445 60135626 -116838514 - L1MA2 LINE L1 -226 6078 5903 * 7575 148 24 2 chrX 60135617 60136903 -116837237 - L1MA2 LINE L1 -1263 4883 3569 630 199 0 34 chrX 60136897 60137000 -116837140 - L1MA2 LINE L1 -2782 3364 3259 * 183 42 0 0 chrX 60137000 60137024 -116837116 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1633 147 11 28 chrX 60137026 60137311 -116836829 - AluJb SINE Alu -32 280 1 630 199 0 34 chrX 60137311 60137380 -116836760 - L1MA2 LINE L1 -2888 3258 3195 594 113 0 0 chrX 60141274 60141371 -116832769 + (GA)n Simple_repeat Simple_repeat 2 98 0 186 43 0 0 chrX 60141847 60141870 -116832270 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3081 50 0 0 chrX 60142621 60143001 -116831139 - L1PA7 LINE L1 -6 6148 5769 41696 44 3 0 chrX 60143018 60149158 -116824982 - L1PA4 LINE L1 -1 6154 2 569 42 0 0 chrX 60149159 60149231 -116824909 - L1PA7 LINE L1 -373 5781 5710 921 153 36 63 chrX 60149600 60149822 -116824318 + MER20 DNA MER1_type 4 219 0 432 55 0 0 chrX 60149895 60149950 -116824190 + (TG)n Simple_repeat Simple_repeat 2 56 0 583 179 17 0 chrX 60151925 60152042 -116822098 - L1M4 LINE L1 -4948 1698 1580 1405 158 20 0 chrX 60152047 60152300 -116821840 - MER7C DNA MER2_type 0 612 355 40318 39 22 1 chrX 60152304 60158326 -116815814 + L1PA3 LINE L1 1 6151 -4 37 62 0 0 chrX 60158326 60158391 -116815749 + AT_rich Low_complexity Low_complexity 1 65 0 336 244 12 0 chrX 60158391 60158473 -116815667 - MER7C DNA MER2_type -455 147 65 987 109 44 16 chrX 60158490 60158673 -116815467 - L1MA3 LINE L1 0 7724 7537 9265 151 15 12 chrX 60158760 60159115 -116815025 - L1MA3 LINE L1 -182 7542 7190 4479 150 55 82 chrX 60159115 60160216 -116813924 + MER11C LTR ERVK 1 1071 0 9265 151 15 12 chrX 60160216 60162508 -116811632 - L1MA3 LINE L1 -534 7190 4890 21605 145 22 5 chrX 60162529 60164384 -116809756 - L1PA10 LINE L1 -4 6164 4343 2425 132 3 3 chrX 60164384 60164748 -116809392 - THE1B LTR MaLR 0 364 1 10100 122 41 3 chrX 60164748 60166269 -116807871 - THE1B-int LTR MaLR 0 1580 1 2382 118 19 25 chrX 60166269 60166311 -116807829 - THE1B LTR MaLR 0 364 323 2267 120 0 0 chrX 60166311 60166612 -116807528 + AluSq SINE Alu 1 301 -12 2382 118 19 25 chrX 60166612 60166935 -116807205 - THE1B LTR MaLR -41 323 1 21605 145 22 5 chrX 60166935 60168134 -116806006 - L1PA10 LINE L1 -1825 4343 3166 2018 145 0 3 chrX 60168134 60168431 -116805709 - AluSx SINE Alu -16 296 1 21605 145 22 5 chrX 60168431 60170275 -116803865 - L1PA10 LINE L1 -3002 3166 1186 3492 157 30 7 chrX 60170258 60174736 -116799404 - L1MA3 LINE L1 -2843 4722 13 * 392 197 40 0 chrX 60174738 60174814 -116799326 - MER7C DNA MER2_type -523 79 1 4708 182 42 31 chrX 60174814 60175923 -116798217 - L1M4 LINE L1 -4971 1571 451 14713 175 28 20 chrX 60175929 60177629 -116796511 - L1 LINE L1 -1178 5670 3985 1525 233 39 88 chrX 60177629 60178273 -116795867 + LTR9 LTR ERV1 1 612 0 14713 175 28 20 chrX 60178273 60182188 -116791952 - L1 LINE L1 -2863 3985 10 2117 154 0 3 chrX 60182267 60182610 -116791530 - MLT1A1 LTR MaLR -8 357 16 469 174 20 31 chrX 60182721 60182819 -116791321 + MLT1D LTR MaLR 1 97 -408 * 596 176 148 7 chrX 60182816 60182958 -116791182 + MLT1D LTR MaLR 344 505 0 28 0 0 0 chrX 60183481 60183509 -116790631 + AT_rich Low_complexity Low_complexity 1 28 0 232 345 102 22 chrX 60183644 60183870 -116790270 - MARNA DNA Mariner -6 580 337 511 292 12 29 chrX 60184633 60184804 -116789336 - L3 LINE CR1 -251 1326 1159 213 200 0 0 chrX 60186490 60186535 -116787605 + L2 LINE L2 3226 3270 -2 16685 165 8 20 chrX 60186939 60187606 -116786534 + L1PA14 LINE L1 1548 2222 -3939 2322 97 0 0 chrX 60187606 60187906 -116786234 + AluY SINE Alu 1 300 -11 16685 165 8 20 chrX 60187906 60191900 -116782240 + L1PA14 LINE L1 2222 6152 -9 235 235 0 0 chrX 60193349 60193400 -116780740 + (CATA)n Simple_repeat Simple_repeat 4 54 0 19128 163 30 26 chrX 60193933 60197155 -116776985 + L1MA2 LINE L1 13 3222 -4501 2316 77 47 0 chrX 60197155 60197454 -116776686 - AluSp SINE Alu 0 313 1 19128 163 30 26 chrX 60197454 60199619 -116774521 + L1MA2 LINE L1 3222 5378 -2345 4267 26 0 0 chrX 60199619 60200119 -116774021 + L1PA4 LINE L1 5648 6147 -8 19128 163 30 26 chrX 60200119 60202257 -116771883 + L1MA2 LINE L1 5378 7719 -4 748 227 74 39 chrX 60203505 60203708 -116770432 - MER63A DNA MER1_type 0 210 1 292 203 0 43 chrX 60204449 60204518 -116769622 - MIR3 SINE MIR -6 202 137 1763 172 8 0 chrX 60204531 60204886 -116769254 + L1MA7 LINE L1 4977 5334 -812 5545 113 20 11 chrX 60204887 60205469 -116768671 + L1PA13 LINE L1 5237 5831 -332 2082 115 14 3 chrX 60205469 60205757 -116768383 + AluSg SINE Alu 1 291 -19 5545 113 20 11 chrX 60205757 60206082 -116768058 + L1PA13 LINE L1 5831 6152 -11 4284 143 40 15 chrX 60206087 60206372 -116767768 + L1MA7 LINE L1 5320 5596 -695 2314 85 0 0 chrX 60206372 60206667 -116767473 + AluY SINE Alu 1 295 -16 4284 143 40 15 chrX 60206667 60207188 -116766952 + L1MA7 LINE L1 5596 6146 -145 621 226 109 70 chrX 60207404 60207580 -116766560 - L1MC4 LINE L1 0 8042 7874 396 40 0 0 chrX 60207580 60207630 -116766510 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 621 226 109 70 chrX 60207630 60207940 -116766200 - L1MC4 LINE L1 -168 7874 7537 * 4049 183 45 41 chrX 60207936 60209254 -116764886 - L1MB8 LINE L1 -1 6177 4868 1497 155 16 69 chrX 60209271 60209574 -116764566 + AluJb SINE Alu 1 287 -25 233 333 0 23 chrX 60210072 60210159 -116763981 + GA-rich Low_complexity Low_complexity 3 87 0 237 105 53 0 chrX 60210225 60210263 -116763877 + Alu SINE Alu 86 125 -177 3799 132 24 41 chrX 60210279 60210961 -116763179 - L1PA15 LINE L1 0 6165 5496 225 0 0 0 chrX 60210964 60210989 -116763151 + (TTA)n Simple_repeat Simple_repeat 3 27 0 6980 58 1 3 chrX 60210989 60212368 -116761772 - L1PA6 LINE L1 -18 6136 4758 4325 156 30 19 chrX 60212369 60213450 -116760690 - L1PA15 LINE L1 -676 5489 4404 258 304 33 33 chrX 60213540 60213632 -116760508 + L3b LINE CR1 1163 1254 -329 2439 74 0 0 chrX 60215386 60215684 -116758456 + AluY SINE Alu 1 298 -13 201 336 80 62 chrX 60216699 60216812 -116757328 + L2 LINE L2 3121 3235 -37 302 246 88 35 chrX 60217100 60217214 -116756926 + MIR SINE MIR 104 223 -39 183 243 0 0 chrX 60217350 60217387 -116756753 + L3 LINE CR1 1539 1575 -2 255 268 14 28 chrX 60217574 60217645 -116756495 - L2 LINE L2 -57 3256 3187 206 236 18 55 chrX 60217654 60217709 -116756431 + MIR SINE MIR 37 89 -119 302 289 39 39 chrX 60218191 60218319 -116755821 - MIR SINE MIR -43 219 92 246 279 93 12 chrX 60218431 60218517 -116755623 + MIR SINE MIR 26 118 -90 24 0 0 0 chrX 60218933 60218957 -116755183 + AT_rich Low_complexity Low_complexity 1 24 0 444 287 69 69 chrX 60220173 60220389 -116753751 + MIR SINE MIR 46 261 -1 359 349 91 6 chrX 60220515 60220670 -116753470 - MIR SINE MIR -55 207 34 758 142 0 57 chrX 60220670 60220811 -116753329 - FLAM_C SINE Alu 0 133 1 359 349 91 6 chrX 60220811 60220830 -116753310 - MIR SINE MIR -228 34 18 22 35 0 0 chrX 60221072 60221101 -116753039 + AT_rich Low_complexity Low_complexity 1 29 0 188 237 0 0 chrX 60221661 60221706 -116752434 + MIR SINE MIR 114 159 -49 1189 166 122 58 chrX 60222101 60222444 -116751696 - MLT1A1 LTR MaLR 0 365 1 2880 269 180 10 chrX 60222577 60222903 -116751237 + L1MC2 LINE L1 3474 3743 -2403 2121 122 0 14 chrX 60222903 60223198 -116750942 - AluSx SINE Alu -21 291 1 2880 269 180 10 chrX 60223198 60223563 -116750577 + L1MC2 LINE L1 3743 4045 -2101 2208 112 0 0 chrX 60223563 60223850 -116750290 + AluSx SINE Alu 7 293 -19 752 197 99 13 chrX 60223851 60224003 -116750137 + AluJo/FRAM SINE Alu 137 301 -1 2880 269 180 10 chrX 60224003 60224692 -116749448 + L1MC2 LINE L1 4044 5092 -1054 668 195 103 5 chrX 60224693 60224878 -116749262 - L1MC3 LINE L1 0 7785 7583 1310 108 5 10 chrX 60224881 60225084 -116749056 - L1PA16 LINE L1 -1 6165 5964 959 235 4 4 chrX 60225084 60225335 -116748805 + L1MC2 LINE L1 5080 5330 -816 * 2529 179 60 28 chrX 60225331 60225984 -116748156 + L1P LINE L1 4660 5333 -813 * 5375 186 40 8 chrX 60225979 60227043 -116747097 + L1M1 LINE L1 12 1108 -6457 * 14532 128 30 18 chrX 60227042 60227718 -116746422 - L1M1 LINE L1 -4197 3368 2702 1922 75 55 0 chrX 60227718 60227898 -116746242 - AluY SINE Alu 0 315 114 210 91 0 0 chrX 60227898 60227931 -116746209 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1922 75 55 0 chrX 60227931 60228038 -116746102 - AluY SINE Alu -201 114 14 14532 128 30 18 chrX 60228038 60229878 -116744262 - L1M1 LINE L1 -4863 2702 820 3639 132 18 3 chrX 60229902 60230518 -116743622 + L1MC2 LINE L1 5555 6179 -165 34 24 0 0 chrX 60230612 60230653 -116743487 + AT_rich Low_complexity Low_complexity 1 41 0 713 221 64 20 chrX 60230682 60230886 -116743254 + L1ME1 LINE L1 5933 6145 -21 369 172 69 60 chrX 60231035 60231151 -116742989 - MIR3 SINE MIR -21 187 71 1223 201 94 30 chrX 60231151 60231524 -116742616 - L1M4 LINE L1 -3360 2786 2390 1021 148 0 0 chrX 60231528 60231683 -116742457 + AluJb SINE Alu 140 294 -18 882 145 0 0 chrX 60232155 60232286 -116741854 + FLAM_C SINE Alu 1 131 -2 358 270 17 46 chrX 60232339 60232513 -116741627 + CT-rich Low_complexity Low_complexity 2 170 0 563 116 0 0 chrX 60233104 60233190 -116740950 - L1PA11 LINE L1 -80 6094 6009 414 287 17 17 chrX 60233598 60233713 -116740427 - MIR3 SINE MIR -23 185 71 7972 206 38 31 chrX 60233829 60235015 -116739125 - L1MC3 LINE L1 -10 7775 6567 1000 42 0 58 chrX 60235015 60235206 -116738934 + (TA)n Simple_repeat Simple_repeat 1 180 0 7972 206 38 31 chrX 60235206 60236175 -116737965 - L1MC3 LINE L1 -1218 6567 5606 28708 31 14 1 chrX 60236319 60242337 -116731803 + L1PA2 LINE L1 3 6148 -7 243 0 0 0 chrX 60242340 60242367 -116731773 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 264 205 24 72 chrX 60242809 60242892 -116731248 + MIR SINE MIR 109 187 -75 261 235 165 35 chrX 60243794 60243879 -116730261 - MIR3 SINE MIR 0 208 113 2327 73 0 70 chrX 60244013 60244341 -116729799 - AluY SINE Alu -6 305 1 198 0 0 0 chrX 60244481 60244503 -116729637 + (TG)n Simple_repeat Simple_repeat 2 23 0 186 261 43 0 chrX 60245888 60245934 -116728206 - MIR3 SINE MIR -19 189 142 222 273 109 19 chrX 60245971 60246088 -116728052 + MIR SINE MIR 16 182 -80 1432 236 52 68 chrX 60246091 60246662 -116727478 - MER68 LTR ERV1 0 562 1 214 193 35 18 chrX 60246679 60246736 -116727404 + (TA)n Simple_repeat Simple_repeat 1 58 0 25 51 0 0 chrX 60248226 60248265 -116725875 + AT_rich Low_complexity Low_complexity 1 39 0 192 40 0 0 chrX 60249345 60249370 -116724770 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 218 268 24 8 chrX 60249854 60249927 -116724213 + CT-rich Low_complexity Low_complexity 2 129 0 425 314 57 13 chrX 60250448 60250607 -116723533 + MIR SINE MIR 47 212 -50 1781 130 33 33 chrX 60250643 60250944 -116723196 + AluJo SINE Alu 1 301 -11 186 379 38 8 chrX 60251413 60251545 -116722595 - L2 LINE L2 -11 3302 3167 1483 113 113 0 chrX 60252393 60252605 -116721535 + AluSx SINE Alu 1 236 -76 442 273 14 35 chrX 60252675 60252818 -116721322 + MIR SINE MIR 79 218 -44 303 129 113 0 chrX 60252824 60252886 -116721254 + AluJ/FRAM SINE Alu 232 300 -2 220 214 0 54 chrX 60252886 60252942 -116721198 + GA-rich Low_complexity Low_complexity 1 53 0 1471 188 20 10 chrX 60253035 60253327 -116720813 - LTR51 LTR ERV1 -155 516 222 384 257 95 20 chrX 60253422 60253620 -116720520 - MER101B LTR ERV1 -448 122 1 1404 107 0 0 chrX 60253794 60254010 -116720130 + L1MA4 LINE L1 6074 6289 -11 526 262 83 30 chrX 60254078 60254246 -116719894 + MIR SINE MIR 79 255 -7 2581 64 0 3 chrX 60254562 60254876 -116719264 - AluSq SINE Alu 0 313 1 184 196 71 18 chrX 60257027 60257083 -116717057 + MIR SINE MIR 107 165 -97 2429 93 0 3 chrX 60257384 60257694 -116716446 - AluSx SINE Alu -3 309 1 543 303 31 6 chrX 60257907 60258069 -116716071 + MIR SINE MIR 49 214 -48 476 253 71 80 chrX 60259420 60259473 -116714667 - MIR SINE MIR -1 261 209 204 40 0 0 chrX 60259473 60259498 -116714642 + (CA)n Simple_repeat Simple_repeat 2 26 0 476 253 71 80 chrX 60259498 60259669 -116714471 - MIR SINE MIR -53 209 39 210 119 24 24 chrX 60259752 60259794 -116714346 + (TTA)n Simple_repeat Simple_repeat 3 44 0 189 0 0 0 chrX 60262084 60262105 -116712035 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 526 284 132 54 chrX 60262573 60262869 -116711271 - L3 LINE CR1 -39 1538 1220 3809 192 91 10 chrX 60262885 60264415 -116709725 + L1PA13 LINE L1 1 1710 -5871 17890 195 15 10 chrX 60264473 60265261 -116708879 + L1PA13 LINE L1 2471 3254 -4347 2046 137 0 48 chrX 60265261 60265576 -116708564 - AluSx SINE Alu -12 300 1 17890 195 15 10 chrX 60265576 60266667 -116707473 + L1PA13 LINE L1 3254 4338 -3263 15598 40 7 7 chrX 60266667 60269367 -116704773 + L1PA5 LINE L1 3468 6167 0 17890 195 15 10 chrX 60269367 60270150 -116703990 + L1PA13 LINE L1 4338 5116 -2485 1976 124 3 11 chrX 60270150 60270478 -116703662 + AluSx SINE Alu 1 326 0 17890 195 15 10 chrX 60270478 60272902 -116701238 + L1PA13 LINE L1 5116 7590 -11 944 183 52 0 chrX 60274025 60274216 -116699924 + MER3 DNA MER1_type 1 201 -8 1121 58 7 0 chrX 60275059 60275198 -116698942 + AluSg SINE Alu 1 140 -170 1716 88 44 0 chrX 60275201 60275427 -116698713 + AluSg SINE Alu 55 290 -20 180 0 0 0 chrX 60275731 60275751 -116698389 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 215 355 136 18 chrX 60275953 60276063 -116698077 + L2 LINE L2 3133 3255 -17 184 73 0 73 chrX 60276706 60276713 -116697427 + (GAAAA)n Simple_repeat Simple_repeat 2 8 -31 2427 97 0 0 chrX 60276713 60277021 -116697119 + AluSg SINE Alu 1 308 -2 184 73 0 73 chrX 60277021 60277054 -116697086 + (GAAAA)n Simple_repeat Simple_repeat 8 39 0 2400 92 0 0 chrX 60277058 60277361 -116696779 + AluSx SINE Alu 1 303 -9 312 27 0 0 chrX 60277580 60277617 -116696523 + (TG)n Simple_repeat Simple_repeat 2 38 0 434 290 15 15 chrX 60277941 60278072 -116696068 + MIR3 SINE MIR 69 199 -9 240 95 0 48 chrX 60279173 60279215 -116694925 + L1P4 LINE L1 5732 5771 -394 18803 39 2 0 chrX 60279287 60282379 -116691761 - L1PA3 LINE L1 -3 6152 3059 2481 104 32 16 chrX 60282414 60282846 -116691294 - L1MA3 LINE L1 -5 6300 5862 2598 149 5 2 chrX 60282946 60283381 -116690759 + L1PA15 LINE L1 5729 6164 -1 2565 167 9 16 chrX 60283413 60284146 -116689994 - L1MA3 LINE L1 -595 5710 4979 6162 82 0 3 chrX 60284180 60284403 -116689737 - L1PB1 LINE L1 -2 6149 5927 2020 156 0 0 chrX 60284403 60284698 -116689442 - AluSx SINE Alu -17 295 1 6162 82 0 3 chrX 60284698 60285563 -116688577 - L1PB1 LINE L1 -224 5927 5103 4745 117 51 5 chrX 60285563 60286837 -116687303 - L1PBa LINE L1 -4748 2115 636 924 172 31 0 chrX 60286839 60287031 -116687109 - L1PBa LINE L1 -6663 200 3 12692 81 6 1 chrX 60287215 60289290 -116684850 - L1P3 LINE L1 -515 5954 3871 16252 119 15 62 chrX 60289666 60292673 -116681467 - L1P3 LINE L1 -2566 3895 1033 774 82 0 0 chrX 60292663 60292760 -116681380 - L1P3 LINE L1 -6364 97 1 * 19975 150 65 10 chrX 60292769 60294182 -116679958 - L1 LINE L1 -3565 4000 2666 203 0 37 0 chrX 60294182 60294209 -116679931 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 19975 150 65 10 chrX 60294209 60296579 -116677561 - L1 LINE L1 -4899 2666 12 3188 232 98 6 chrX 60296583 60297657 -116676483 - L1M4b LINE L1 -2360 4597 3425 3701 210 22 16 chrX 60297737 60298665 -116675475 + L1P LINE L1 4400 5332 -814 7317 34 2 1 chrX 60298665 60300287 -116673853 + L1PA4 LINE L1 4566 6183 0 4851 138 54 7 chrX 60300633 60301485 -116672655 + L1PA16 LINE L1 5270 6161 -5 462 270 99 50 chrX 60301506 60301828 -116672312 - L1M4b LINE L1 -4320 2818 2481 773 262 135 35 chrX 60301939 60302670 -116671470 - L1M4b LINE L1 -4551 2408 1626 351 0 0 0 chrX 60302670 60302709 -116671431 + (CA)n Simple_repeat Simple_repeat 2 40 0 773 262 135 35 chrX 60302709 60302723 -116671417 - L1M4b LINE L1 -5333 1626 1615 834 235 5 10 chrX 60302725 60302925 -116671215 - L1M4b LINE L1 -5365 1494 1296 2401 261 55 71 chrX 60303372 60304384 -116669756 - L1M4b LINE L1 -5635 1224 11 620 152 0 0 chrX 60304409 60304501 -116669639 - U4 snRNA snRNA -29 116 25 447 222 30 10 chrX 60304583 60304682 -116669458 + MIR3 SINE MIR 105 205 -3 2546 43 0 3 chrX 60307792 60308093 -116666047 + AluY SINE Alu 1 300 -11 2088 142 3 0 chrX 60308104 60308414 -116665726 + AluSx SINE Alu 1 311 -1 2771 189 36 4 chrX 60309054 60309584 -116664556 - L1P LINE L1 -5589 557 11 1884 239 30 6 chrX 60309607 60310100 -116664040 - L1M4 LINE L1 -948 5198 4694 1309 229 36 34 chrX 60310086 60310470 -116663670 - L1M4 LINE L1 -1984 4162 3778 * 5216 170 18 17 chrX 60310470 60312545 -116661595 - L1MA2 LINE L1 0 7723 5396 2399 182 30 8 chrX 60312545 60313017 -116661123 - L1PA16 LINE L1 0 6166 5685 543 122 11 0 chrX 60313176 60313266 -116660874 + L1MA1 LINE L1 6212 6302 0 1409 177 98 90 chrX 60313279 60313811 -116660329 - L1MA2 LINE L1 -2583 4982 4447 42587 49 5 4 chrX 60313817 60319952 -116654188 - L1PA4 LINE L1 -3 6152 13 1037 223 11 4 chrX 60319947 60320207 -116653933 - L1MA2 LINE L1 -3103 4462 4201 * 3227 206 6 20 chrX 60320204 60320861 -116653279 - L1MA2 LINE L1 -6900 665 18 3209 153 85 7 chrX 60321175 60321857 -116652283 - Charlie1 DNA MER1_type -6 2755 2021 838 218 79 45 chrX 60322057 60322438 -116651702 - L1MC4a LINE L1 -1287 6521 6128 727 237 35 22 chrX 60322457 60322685 -116651455 - L1MC4a LINE L1 -1739 6069 5839 729 122 0 17 chrX 60322694 60322809 -116651331 - FLAM_A SINE Alu -9 133 21 1144 296 76 76 chrX 60322924 60323764 -116650376 - HAL1 LINE L1 -1666 841 2 1852 132 45 14 chrX 60324504 60324793 -116649347 + AluJb SINE Alu 3 300 -12 271 174 267 12 chrX 60328501 60328587 -116645553 - MIR3 SINE MIR -87 121 14 1050 257 73 51 chrX 60330834 60331478 -116642662 - L1MC4a LINE L1 -91 6030 5374 24 0 0 0 chrX 60331865 60331889 -116642251 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chrX 60331914 60331951 -116642189 + AT_rich Low_complexity Low_complexity 1 37 0 527 204 68 19 chrX 60331971 60332137 -116642003 + L1MA9 LINE L1 6119 6284 -7 1291 281 63 18 chrX 60332289 60332781 -116641359 - L1ME4a LINE L1 -263 5858 5345 2303 116 0 0 chrX 60332925 60333236 -116640904 - AluSx SINE Alu -1 311 1 198 221 0 103 chrX 60333274 60333342 -116640798 - MER5A DNA MER1_type -22 167 107 587 158 10 9 chrX 60333413 60333545 -116640595 - L1MA9 LINE L1 -1 6290 6163 257 381 0 0 chrX 60333887 60333971 -116640169 - L2 LINE L2 -11 3261 3178 361 299 246 5 chrX 60334039 60334246 -116639894 - MIR SINE MIR 0 262 6 2202 92 7 0 chrX 60335312 60335625 -116638515 - AluSp SINE Alu 0 315 1 180 0 0 0 chrX 60336398 60336418 -116637722 + (CAA)n Simple_repeat Simple_repeat 2 21 0 200 250 0 42 chrX 60337575 60337623 -116636517 + L2 LINE L2 3263 3308 -5 6620 124 82 10 chrX 60337757 60338905 -116635235 - Tigger3b DNA MER2_type 0 1231 1 6644 123 14 5 chrX 60339719 60341556 -116632584 - L1PA10 LINE L1 -19 6149 4297 252 292 25 50 chrX 60341714 60341834 -116632306 + MIR3 SINE MIR 46 162 -46 782 234 15 25 chrX 60341840 60342037 -116632103 + MER58A DNA MER1_type 27 221 -3 2092 130 3 3 chrX 60342246 60342546 -116631594 - AluSx SINE Alu -9 303 4 2126 130 11 45 chrX 60342633 60343010 -116631130 - THE1B LTR MaLR 0 364 1 9208 99 12 2 chrX 60343010 60344257 -116629883 - MSTB1-int LTR MaLR 0 1580 321 5899 118 36 34 chrX 60344359 60345156 -116628984 + L1PBa LINE L1 1262 2063 -4800 534 0 0 0 chrX 60345156 60345223 -116628917 + L1PA2 LINE L1 6089 6155 0 5899 118 36 34 chrX 60345223 60345446 -116628694 + L1PBa LINE L1 2063 2284 -4579 * 10253 160 32 8 chrX 60345418 60347614 -116626526 + L1M1 LINE L1 1734 3980 -3585 12751 56 3 7 chrX 60347614 60349736 -116624404 - L1PA6 LINE L1 -1 6153 4038 5702 68 55 3 chrX 60349736 60350477 -116623663 - LTR17 LTR ERV1 0 780 1 12751 56 3 7 chrX 60350477 60350800 -116623340 - L1PA6 LINE L1 -2116 4038 3715 5796 191 178 19 chrX 60350901 60352143 -116621997 - Charlie1 DNA MER1_type -1036 1725 207 183 80 0 0 chrX 60352143 60352168 -116621972 + (TG)n Simple_repeat Simple_repeat 1 25 0 5796 191 178 19 chrX 60352168 60352414 -116621726 - Charlie1 DNA MER1_type -2554 207 1 1899 166 0 0 chrX 60352677 60352973 -116621167 + AluJb SINE Alu 1 296 -16 2238 164 31 24 chrX 60353356 60353772 -116620368 - MSTB1 LTR MaLR -13 419 1 1535 212 0 3 chrX 60353920 60354234 -116619906 + AluJo SINE Alu 1 313 0 622 147 0 0 chrX 60354584 60354686 -116619454 - FLAM_A SINE Alu -15 127 26 22 56 0 0 chrX 60354741 60354777 -116619363 + AT_rich Low_complexity Low_complexity 1 36 0 228 62 0 0 chrX 60354777 60354809 -116619331 - L1MA3 LINE L1 -5 6300 6269 1767 195 90 11 chrX 60355009 60355487 -116618653 + L1M4c LINE L1 1966 2481 -3903 301 273 165 54 chrX 60355497 60355757 -116618383 + L2 LINE L2 2612 2900 -414 202 301 176 20 chrX 60355801 60355954 -116618186 + L2 LINE L2 2977 3153 -119 190 373 75 30 chrX 60357101 60357235 -116616905 - L2 LINE L2 -208 3064 2925 281 316 94 26 chrX 60358185 60358302 -116615838 - L2 LINE L2 0 3272 3148 278 293 0 27 chrX 60358713 60358788 -116615352 - MIR SINE MIR -102 106 34 1273 94 16 36 chrX 60358897 60359089 -116615051 - AluSg/x SINE Alu -12 300 113 14211 174 38 7 chrX 60359207 60363015 -116611125 - L1 LINE L1 -2534 5031 1103 556 211 39 16 chrX 60363009 60363137 -116611003 - L1 LINE L1 -7430 135 5 * 239 24 0 95 chrX 60365212 60365254 -116608886 - L1PA10 LINE L1 -3 6165 6128 836 218 21 137 chrX 60365442 60365603 -116608537 + L1MC4 LINE L1 7639 7817 -225 862 111 0 76 chrX 60365603 60365747 -116608393 - FLAM_C SINE Alu 0 133 1 836 218 21 137 chrX 60365747 60366008 -116608132 + L1MC4 LINE L1 7817 8012 -30 266 234 234 0 chrX 60366092 60366229 -116607911 + HAL1 LINE L1 1117 1285 -1222 322 132 0 0 chrX 60366232 60366285 -116607855 - MADE1 DNA Mariner -1 79 27 578 220 40 27 chrX 60366290 60366440 -116607700 + HAL1 LINE L1 1307 1458 -1049 768 230 87 77 chrX 60366460 60366864 -116607276 + HAL1 LINE L1 1915 2322 -185 9979 194 17 2 chrX 60367638 60369752 -116604388 + L1 LINE L1 3187 5332 -814 6372 20 1 0 chrX 60369762 60370823 -116603317 + L1P1 LINE L1 4638 5699 -456 231 314 122 29 chrX 60371840 60372012 -116602128 + L2 LINE L2 3120 3307 -6 2251 95 0 0 chrX 60372786 60373071 -116601069 - AluSg SINE Alu -4 306 22 652 133 0 19 chrX 60373297 60373402 -116600738 - L1PB4 LINE L1 -8 6148 6046 241 299 172 30 chrX 60373476 60373610 -116600530 - MIR3 SINE MIR -11 197 45 3585 208 55 58 chrX 60374376 60375200 -116598940 - L1MD2 LINE L1 -7 6352 5531 2070 113 3 0 chrX 60375200 60375484 -116598656 - AluSx SINE Alu -27 285 1 3585 208 55 58 chrX 60375484 60375805 -116598335 - L1MD2 LINE L1 -828 5531 5211 2146 214 90 13 chrX 60375818 60376374 -116597766 + L1ME1 LINE L1 827 1425 -5115 3375 209 53 44 chrX 60376767 60377862 -116596278 + L1ME1 LINE L1 1431 2535 -4005 1147 218 17 101 chrX 60377881 60378019 -116596121 + L1ME1 LINE L1 4694 4842 -1698 1130 170 9 27 chrX 60378019 60378242 -116595898 - MER20 DNA MER1_type 0 219 1 1147 218 17 101 chrX 60378242 60378696 -116595444 + L1ME1 LINE L1 4842 5236 -1304 2295 231 4 12 chrX 60378701 60379203 -116594937 + MLT1D LTR MaLR 1 498 -7 3082 225 45 17 chrX 60379372 60380480 -116593660 + L1ME1 LINE L1 5400 6543 -17 2279 108 0 0 chrX 60380732 60381027 -116593113 - AluSx SINE Alu -17 295 1 6924 63 0 1 chrX 60431512 60432657 -116541483 + L1PA7 LINE L1 4990 6139 -15 188 35 35 0 chrX 60432657 60432686 -116541454 + (TA)n Simple_repeat Simple_repeat 2 31 0 741 221 76 28 chrX 60432916 60433137 -116541003 - MIR SINE MIR 0 262 32 594 293 107 42 chrX 60433308 60433755 -116540385 + L1M4 LINE L1 2 477 -6065 395 258 68 81 chrX 60433863 60434185 -116539955 + HAL1 LINE L1 1160 1477 -1030 360 340 0 0 chrX 60434244 60434385 -116539755 + HAL1 LINE L1 1483 1623 -884 355 191 86 19 chrX 60434388 60434493 -116539647 + L1ME3A LINE L1 6059 6170 0 14531 222 19 20 chrX 60434673 60441104 -116533036 + L1PA15 LINE L1 1181 7603 0 803 178 3 11 chrX 60441118 60441284 -116532856 + L1M4 LINE L1 5363 5528 -646 312 27 0 0 chrX 60441284 60441321 -116532819 + (CA)n Simple_repeat Simple_repeat 1 37 0 249 258 0 30 chrX 60441366 60441432 -116532708 + (CATATA)n Simple_repeat Simple_repeat 5 68 0 329 258 18 167 chrX 60441683 60441792 -116532348 - MER5A DNA MER1_type -1 188 127 2123 104 7 3 chrX 60441792 60442089 -116532051 + AluSc SINE Alu 1 298 -11 329 258 18 167 chrX 60442089 60442200 -116531940 - MER5A DNA MER1_type -62 127 1 201 340 162 20 chrX 60442212 60442465 -116531675 + L2 LINE L2 2689 2977 -337 237 304 103 18 chrX 60443005 60443278 -116530862 + L1M4 LINE L1 4414 4709 -1437 612 238 8 0 chrX 60443348 60443474 -116530666 + FLAM_A SINE Alu 1 127 -6 800 216 138 14 chrX 60444345 60444642 -116529498 - L1ME4a LINE L1 -29 6092 5759 6785 189 30 13 chrX 60444761 60447307 -116526833 + L1MC2 LINE L1 3593 6184 -160 997 149 5 55 chrX 60447408 60447609 -116526531 + L1MC2 LINE L1 6132 6322 -22 180 0 0 0 chrX 60447615 60447635 -116526505 + (TAA)n Simple_repeat Simple_repeat 1 20 0 351 44 0 0 chrX 60447865 60447910 -116526230 + (TA)n Simple_repeat Simple_repeat 1 45 0 2315 98 0 0 chrX 60448283 60448579 -116525561 + AluSq SINE Alu 1 296 -17 477 348 99 68 chrX 60450262 60451263 -116522877 + L2 LINE L2 2033 3091 -181 21 0 0 0 chrX 60451621 60451642 -116522498 + AT_rich Low_complexity Low_complexity 1 21 0 615 186 320 0 chrX 60451650 60451806 -116522334 - MIR SINE MIR -26 236 31 2498 85 0 0 chrX 60451876 60452182 -116521958 + AluSx SINE Alu 1 306 -6 622 291 22 0 chrX 60453760 60453939 -116520201 + L1ME LINE L1 5477 5659 -462 867 343 97 31 chrX 60453972 60454706 -116519434 + L2 LINE L2 2521 3313 0 225 220 231 28 chrX 60454708 60454890 -116519250 + L1ME LINE L1 5679 5897 -224 5696 187 46 19 chrX 60455907 60458090 -116516050 - L1MA4A LINE L1 -6 6297 3901 8723 183 41 22 chrX 60458091 60460648 -116513492 + L1P5 LINE L1 3191 5802 -354 7622 198 37 26 chrX 60460640 60462267 -116511873 + L1M1 LINE L1 14 1658 -5907 * 186 143 0 0 chrX 60462896 60462931 -116511209 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 728 164 0 8 chrX 60464821 60464943 -116509197 + FLAM_A SINE Alu 1 121 -12 360 291 117 0 chrX 60465056 60465159 -116508981 + L2 LINE L2 3199 3313 0 1092 202 75 36 chrX 60465197 60465449 -116508691 - MIR SINE MIR 0 262 1 232 316 68 60 chrX 60467363 60467496 -116506644 + L2 LINE L2 3137 3270 -2 2512 78 0 0 chrX 60468830 60469139 -116505001 + AluSc SINE Alu 1 309 0 276 30 0 0 chrX 60469248 60469281 -116504859 + (T)n Simple_repeat Simple_repeat 1 33 0 3740 109 48 63 chrX 60469505 60470311 -116503829 + MER4D LTR ERV1 1 610 0 3647 94 40 24 chrX 60470507 60471052 -116503088 + MER41A LTR ERV1 1 554 0 4016 133 49 21 chrX 60471052 60471759 -116502381 + MER41A-int LTR ERV1 1 635 -5311 * 12176 137 41 35 chrX 60471735 60474172 -116499968 + MER41A-int LTR ERV1 2166 4587 -1359 2037 109 33 0 chrX 60474172 60474470 -116499670 + AluSx SINE Alu 1 307 0 12176 137 41 35 chrX 60474470 60474850 -116499290 + MER41A-int LTR ERV1 4587 4963 -983 2381 88 0 25 chrX 60474850 60475167 -116498973 + AluSx SINE Alu 1 309 -3 12176 137 41 35 chrX 60475167 60475878 -116498262 + MER41A-int LTR ERV1 4963 5944 -2 2992 119 0 0 chrX 60475878 60476306 -116497834 + MER41A LTR ERV1 1 428 -126 4591 173 55 6 chrX 60476308 60476705 -116497435 - L1M2 LINE L1 -601 5711 5335 306 0 0 0 chrX 60476705 60476739 -116497401 + (TG)n Simple_repeat Simple_repeat 2 35 0 4591 173 55 6 chrX 60476739 60477649 -116496491 - L1M2 LINE L1 -977 5335 4356 1556 203 20 3 chrX 60477649 60477955 -116496185 - MER58B DNA MER1_type -30 311 1 14402 92 1 20 chrX 60480174 60482306 -116491834 + L1P LINE L1 2914 5004 -1142 670 242 5 43 chrX 60482469 60482655 -116491485 - L1ME LINE L1 -383 5738 5560 * 2157 203 25 14 chrX 60482641 60482993 -116491147 + L1MC4a LINE L1 6734 7094 -714 2107 150 12 3 chrX 60482993 60483334 -116490806 + MER2 DNA MER2_type 1 344 0 2157 203 25 14 chrX 60483334 60483470 -116490670 + L1MC4a LINE L1 7094 7227 -581 550 285 47 91 chrX 60483470 60483789 -116490351 + L2 LINE L2 2965 3269 -3 3345 83 0 2 chrX 60483996 60484442 -116489698 - THE1B-int LTR MaLR -1135 445 1 2132 124 69 17 chrX 60484442 60484788 -116489352 - THE1B LTR MaLR 0 364 1 381 280 24 48 chrX 60484962 60485130 -116489010 + L2 LINE L2 2588 2751 -563 791 206 82 5 chrX 60485132 60485316 -116488824 + MER3 DNA MER1_type 7 204 -5 21 0 0 0 chrX 60485552 60485573 -116488567 + AT_rich Low_complexity Low_complexity 1 21 0 5291 143 11 9 chrX 60485904 60486799 -116487341 + L1PA13 LINE L1 3433 4329 -1817 197 77 51 0 chrX 60486820 60486859 -116487281 + A-rich Low_complexity Low_complexity 2 42 0 6218 93 12 8 chrX 60486859 60488703 -116485437 + L1PA13 LINE L1 4315 6153 -10 2369 103 0 0 chrX 60488706 60489017 -116485123 + AluSx SINE Alu 1 311 -1 258 208 52 26 chrX 60489252 60489329 -116484811 - L1ME4a LINE L1 -97 6024 5946 2301 138 13 26 chrX 60489357 60489742 -116484398 + MLT1B LTR MaLR 1 380 -10 203 349 0 0 chrX 60490438 60490504 -116483636 - L2 LINE L2 -2 3270 3205 205 376 94 33 chrX 60490606 60490819 -116483321 - L2 LINE L2 -182 3090 2865 237 293 57 41 chrX 60490880 60491003 -116483137 - L2 LINE L2 -552 2762 2638 230 322 78 0 chrX 60492549 60492639 -116481501 - MIR3 SINE MIR -23 185 89 288 299 52 0 chrX 60492927 60493024 -116481116 - L3 LINE CR1 -1211 366 265 1905 174 96 9 chrX 60493056 60493390 -116480750 + MLT1A1 LTR MaLR 3 365 0 206 288 51 106 chrX 60493398 60493529 -116480611 - L3b LINE CR1 -196 1387 1273 2210 122 0 0 chrX 60493529 60493832 -116480308 - AluSx SINE Alu -9 303 1 206 288 51 106 chrX 60493832 60493936 -116480204 - L3b LINE CR1 -310 1273 1165 1739 68 0 9 chrX 60493947 60494168 -116479972 - AluY SINE Alu -9 302 84 276 30 0 0 chrX 60494601 60494634 -116479506 + (TG)n Simple_repeat Simple_repeat 2 34 0 204 175 25 0 chrX 60494634 60494674 -116479466 + (TA)n Simple_repeat Simple_repeat 1 41 0 346 210 59 8 chrX 60494675 60494794 -116479346 + MER112 DNA MER1_type 92 216 -44 193 182 0 0 chrX 60494798 60494831 -116479309 + MIR3 SINE MIR 164 196 -12 292 356 119 51 chrX 60495398 60495752 -116478388 + L2 LINE L2 2827 3204 -68 286 321 111 25 chrX 60495961 60496123 -116478017 + L2 LINE L2 3097 3272 0 410 172 54 43 chrX 60497390 60497483 -116476657 - MER53 DNA DNA 0 189 96 252 0 0 0 chrX 60497772 60497800 -116476340 + (CA)n Simple_repeat Simple_repeat 1 28 0 430 329 151 19 chrX 60498372 60498697 -116475443 - L2 LINE L2 -456 2858 2491 213 306 0 16 chrX 60498764 60498826 -116475314 - L2 LINE L2 -10 3303 3243 522 240 77 38 chrX 60499298 60499481 -116474659 - MIR SINE MIR -53 209 20 677 318 37 12 chrX 60499533 60499775 -116474365 + L2 LINE L2 2877 3124 -189 308 241 0 0 chrX 60499791 60499849 -116474291 + MER5A DNA MER1_type 14 71 -118 2352 125 16 11 chrX 60499850 60500217 -116473923 - L1MA4 LINE L1 -158 6142 5774 612 153 77 66 chrX 60500184 60500380 -116473760 + L1MA4 LINE L1 6103 6300 0 * 207 294 226 20 chrX 60500380 60500482 -116473658 + MER5A DNA MER1_type 66 188 -1 2284 91 27 0 chrX 60500643 60500940 -116473200 - AluY SINE Alu -6 305 1 279 247 62 31 chrX 60500991 60501088 -116473052 - HAL1 LINE L1 -2372 135 36 269 194 16 105 chrX 60501087 60501211 -116472929 - L1MEd LINE L1 -5948 171 59 * 1503 185 19 16 chrX 60501392 60501700 -116472440 - AluJo SINE Alu -1 311 3 226 259 0 0 chrX 60501849 60501903 -116472237 + (TA)n Simple_repeat Simple_repeat 2 55 0 629 284 131 14 chrX 60501990 60502020 -116472120 - MIR SINE MIR -10 252 227 189 0 0 0 chrX 60502020 60502041 -116472099 + (CACTG)n Simple_repeat Simple_repeat 5 25 0 629 284 131 14 chrX 60502041 60502232 -116471908 - MIR SINE MIR -35 227 5 23 0 0 0 chrX 60502256 60502279 -116471861 + AT_rich Low_complexity Low_complexity 1 23 0 657 303 28 24 chrX 60502440 60502694 -116471446 - MIR SINE MIR 0 262 8 1118 60 0 8 chrX 60502990 60503123 -116471017 - AluSq/x SINE Alu -179 133 2 2891 209 21 58 chrX 60503765 60504443 -116469697 - MLT1E1 LTR MaLR -1 653 1 2712 148 53 20 chrX 60504470 60504612 -116469528 + L1MB8 LINE L1 5657 5793 -385 1331 247 68 36 chrX 60504612 60504768 -116469372 + MSTD LTR MaLR 1 151 -245 1975 142 4 0 chrX 60504768 60505077 -116469063 + AluSx SINE Alu 1 310 0 1331 247 68 36 chrX 60505077 60505303 -116468837 + MSTD LTR MaLR 151 396 0 2712 148 53 20 chrX 60505303 60505665 -116468475 + L1MB8 LINE L1 5793 6178 0 227 234 31 16 chrX 60505769 60505833 -116468307 + MIR SINE MIR 148 212 -50 266 261 80 112 chrX 60505943 60506192 -116467948 - L3b LINE CR1 -172 1411 1171 835 161 0 51 chrX 60506637 60506774 -116467366 - FLAM_C SINE Alu -2 131 2 1047 275 127 14 chrX 60507467 60507955 -116466185 - L1ME3 LINE L1 -2 6160 5618 256 272 96 57 chrX 60507957 60508243 -116465897 - L1ME3 LINE L1 -660 5506 5215 707 117 8 0 chrX 60508515 60508635 -116465505 - L1P LINE L1 -764 5401 5281 5153 105 15 22 chrX 60509336 60509393 -116464747 - L1PB1 LINE L1 -2 6149 6093 2306 94 3 3 chrX 60509393 60509701 -116464439 - AluSp SINE Alu -5 308 1 5153 105 15 22 chrX 60509701 60510383 -116463757 - L1PB1 LINE L1 -58 6093 5415 10163 130 54 6 chrX 60510384 60510908 -116463232 - L1PBa LINE L1 -3235 3627 3129 2361 100 0 0 chrX 60510908 60511209 -116462931 - AluSx SINE Alu -11 301 1 10163 130 54 6 chrX 60511209 60513408 -116460732 - L1PBa LINE L1 -3733 3129 628 8471 120 93 65 chrX 60513411 60515645 -116458495 - pTR5 LTR ERV1 0 8399 504 555 169 43 73 chrX 60515701 60515960 -116458180 - HERV17 LTR ERV1 -5822 1074 703 16110 102 10 9 chrX 60516027 60519325 -116454815 - HERV17 LTR ERV1 -1935 503 17 4274 111 14 194 chrX 60519325 60520954 -116453186 - pTR5 LTR ERV1 0 2606 1524 2216 243 28 7 chrX 60521001 60521541 -116452599 - L1PBa LINE L1 -6312 551 1 11155 194 14 5 chrX 60521579 60523873 -116450267 - L1PA13 LINE L1 -837 5960 3646 195 42 0 0 chrX 60523874 60523898 -116450242 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 42208 50 24 1 chrX 60523898 60529915 -116444225 - L1PA5 LINE L1 -4 6150 1 22807 87 8 0 chrX 60529916 60532970 -116441170 - L1P LINE L1 -3058 3088 11 11355 211 16 49 chrX 60532977 60536752 -116437388 - L1PA13 LINE L1 -3137 3660 3 1021 213 24 0 chrX 60536809 60537020 -116437120 - L1M4 LINE L1 -1414 4732 4517 1113 108 13 19 chrX 60537047 60537204 -116436936 - FRAM SINE Alu -23 153 1 2077 135 3 0 chrX 60537437 60537748 -116436392 + AluSx SINE Alu 1 312 0 595 302 15 45 chrX 60538122 60538453 -116435687 + L1MEd LINE L1 606 926 -5193 2754 215 136 19 chrX 60538457 60539298 -116434842 + L1ME2 LINE L1 5223 6154 -10 408 222 39 46 chrX 60539313 60539466 -116434674 + L1MC5 LINE L1 7774 7925 -36 5964 166 23 4 chrX 60539591 60540605 -116433535 + L1M1 LINE L1 132 1164 -6401 965 69 0 0 chrX 60540616 60540732 -116433408 - L1PA7 LINE L1 -1 6153 6038 420 39 0 0 chrX 60540732 60540783 -116433357 - L1P2 LINE L1 -619 5535 5485 * 733 106 31 5 chrX 60540773 60540910 -116433230 - L1ME LINE L1 -726 5436 5293 309 347 159 41 chrX 60540910 60541181 -116432959 + L2 LINE L2 2399 2701 -613 1904 147 3 3 chrX 60541183 60541475 -116432665 + AluSx SINE Alu 1 292 -20 1537 176 46 30 chrX 60541541 60541843 -116432297 + AluJo SINE Alu 1 307 -5 344 346 28 96 chrX 60541976 60542340 -116431800 + L2 LINE L2 2909 3247 -25 2459 150 98 23 chrX 60542864 60543191 -116430949 + L1MCa LINE L1 1813 2114 -4312 782 168 0 36 chrX 60543191 60543328 -116430812 + FLAM_C SINE Alu 2 133 0 2459 150 98 23 chrX 60543328 60543574 -116430566 + L1MCa LINE L1 2114 2429 -3997 826 104 0 0 chrX 60543574 60543680 -116430460 + U6 snRNA snRNA 1 106 -1 4214 130 8 0 chrX 60543680 60544319 -116429821 + L1P LINE L1 1995 2638 -3508 2025 144 187 8 chrX 60544320 60544353 -116429787 - LTR46 LTR ERV1 0 460 434 525 16 0 0 chrX 60544353 60544415 -116429725 + (CA)n Simple_repeat Simple_repeat 2 63 0 2025 144 187 8 chrX 60544415 60544771 -116429369 - LTR46 LTR ERV1 -26 434 1 6353 120 4 2 chrX 60544771 60545682 -116428458 - LTR46-int LTR ERV1 0 6985 6073 * 8149 108 1 15 chrX 60545679 60545960 -116428180 - LTR46-int LTR ERV1 -1161 5824 5540 2879 9 0 22 chrX 60545960 60546284 -116427856 + AluYb8 SINE Alu 1 317 -1 8149 108 1 15 chrX 60546284 60547183 -116426957 - LTR46-int LTR ERV1 -1445 5540 4661 34988 115 11 16 chrX 60547368 60547636 -116426504 - LTR46-int LTR ERV1 -1174 5811 5543 2661 43 0 21 chrX 60547636 60547961 -116426179 + AluYb8 SINE Alu 1 318 0 34988 115 11 16 chrX 60547961 60549224 -116424916 - LTR46-int LTR ERV1 -1442 5543 4276 2323 100 0 0 chrX 60549224 60549515 -116424625 - AluY SINE Alu -20 291 1 34988 115 11 16 chrX 60549515 60551921 -116422219 - LTR46-int LTR ERV1 -2709 4276 1898 2336 106 3 0 chrX 60551921 60552224 -116421916 - AluSq SINE Alu -9 304 1 34988 115 11 16 chrX 60552224 60553460 -116420680 - LTR46-int LTR ERV1 -5087 1898 658 4336 100 7 10 chrX 60553728 60554328 -116419812 - LTR46-int LTR ERV1 -6387 598 1 1623 160 31 23 chrX 60554328 60554732 -116419408 - LTR46 LTR ERV1 0 460 1 1930 149 19 0 chrX 60554733 60555056 -116419084 + L1P LINE L1 2636 2964 -3182 3567 71 15 11 chrX 60555056 60555515 -116418625 + L1PA10 LINE L1 5705 6168 0 2687 239 31 8 chrX 60556004 60557179 -116416961 + L1MA10 LINE L1 2497 3644 -3084 1735 192 0 10 chrX 60557179 60557471 -116416669 + AluJo SINE Alu 1 289 -23 2687 239 31 8 chrX 60557471 60557508 -116416632 + L1MA10 LINE L1 3644 3679 -3049 387 0 0 0 chrX 60557508 60557551 -116416589 + (CA)n Simple_repeat Simple_repeat 2 44 0 2687 239 31 8 chrX 60557551 60557641 -116416499 + L1MA10 LINE L1 3679 6652 -76 4298 226 28 28 chrX 60557679 60558256 -116415884 + L1MDa LINE L1 3291 3867 -2673 833 129 29 22 chrX 60558256 60558395 -116415745 + L1PA16 LINE L1 6025 6164 -2 4298 226 28 28 chrX 60558395 60559015 -116415125 + L1MDa LINE L1 3866 4488 -2052 2531 44 3 0 chrX 60559309 60559604 -116414536 - AluY SINE Alu -15 296 1 3578 35 0 0 chrX 60559778 60560207 -116413933 - L1PA3 LINE L1 -1415 4731 4303 8289 21 0 0 chrX 60560207 60561600 -116412540 + L1PA3 LINE L1 4760 6152 -3 27 0 0 0 chrX 60562079 60562106 -116412034 + AT_rich Low_complexity Low_complexity 1 27 0 835 214 19 15 chrX 60562195 60562401 -116411739 + L1 LINE L1 2411 2617 -3529 22446 154 17 10 chrX 60562418 60566480 -116407660 - L1 LINE L1 -3455 4110 16 1942 215 53 40 chrX 60566481 60567140 -116407000 - L1M4 LINE L1 -5069 1786 1120 1559 298 62 38 chrX 60567167 60567744 -116406396 - L1M4 LINE L1 -5825 1034 444 668 179 62 0 chrX 60567748 60567860 -116406280 + FLAM_C SINE Alu 14 132 -11 387 0 0 0 chrX 60567874 60567917 -116406223 + (CA)n Simple_repeat Simple_repeat 1 43 0 756 232 89 8 chrX 60567922 60568304 -116405836 - L1M4 LINE L1 -6405 454 8 2441 251 72 56 chrX 60568306 60569470 -116404670 + L2 LINE L2 2127 3313 0 371 333 45 8 chrX 60570026 60570158 -116403982 - MIR3 SINE MIR -52 156 20 1111 289 60 21 chrX 60570565 60570897 -116403243 - LTR16A LTR ERVL 0 450 106 2786 141 27 14 chrX 60571389 60571872 -116402268 + L1MA9 LINE L1 5824 6312 0 15495 135 27 9 chrX 60571975 60574492 -116399648 + L1PB1 LINE L1 82 2642 -4221 * 42358 44 22 3 chrX 60574488 60580512 -116393628 + L1PA3 LINE L1 13 6155 0 14069 188 31 3 chrX 60580510 60584627 -116389513 + L1PB1 LINE L1 2626 6865 -2 * 509 274 37 0 chrX 60585112 60585276 -116388864 + MIR SINE MIR 47 216 -46 240 297 44 33 chrX 60585780 60585871 -116388269 + L2 LINE L2 3218 3309 -4 271 291 47 23 chrX 60585897 60585983 -116388157 + MIR SINE MIR 19 106 -102 6208 108 10 25 chrX 60586880 60588513 -116385627 + L1PA15 LINE L1 4553 6165 0 21 0 0 0 chrX 60588618 60588639 -116385501 + AT_rich Low_complexity Low_complexity 1 21 0 183 100 0 0 chrX 60588649 60588679 -116385461 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 6721 32 3 0 chrX 60588679 60589455 -116384685 - L1PA5 LINE L1 -24 6130 5353 239 297 0 0 chrX 60589493 60589557 -116384583 - MIR SINE MIR -120 142 79 40374 49 7 0 chrX 60589688 60595752 -116378388 + L1PA4 LINE L1 45 6152 -3 1855 134 0 12 chrX 60595749 60596084 -116378056 + L1P4 LINE L1 5285 5615 -548 * 1543 283 38 2 chrX 60596103 60596630 -116377510 + L1PBa LINE L1 6 551 -6312 9677 217 16 8 chrX 60596703 60597312 -116376828 + L1PBa LINE L1 1736 2338 -4524 2838 16 0 0 chrX 60597312 60597625 -116376515 - AluYb8 SINE Alu -5 313 1 9677 217 16 8 chrX 60597625 60600330 -116373810 + L1PBa LINE L1 2338 5122 -1740 19050 110 27 35 chrX 60600341 60604460 -116369680 + L1PB1 LINE L1 5 4192 -2269 7773 114 2 0 chrX 60604458 60605162 -116368978 + L1PA7 LINE L1 1611 2319 -3827 * 207 0 0 0 chrX 60605162 60605185 -116368955 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7773 114 2 0 chrX 60605185 60605695 -116368445 + L1PA7 LINE L1 2319 2827 -3319 * 20129 49 18 2 chrX 60605694 60608431 -116365709 - L1P LINE L1 -2420 3726 948 7445 55 17 0 chrX 60608431 60610137 -116364003 + L1PA5 LINE L1 4432 6152 -2 17376 101 2 1 chrX 60610138 60613465 -116360675 + L1PA7 LINE L1 2816 6151 -3 5720 141 31 3 chrX 60613479 60614823 -116359317 + L1PB1 LINE L1 4716 6120 -346 753 114 0 0 chrX 60614823 60614937 -116359203 + (TA)n Simple_repeat Simple_repeat 2 115 0 5720 141 31 3 chrX 60614937 60615295 -116358845 + L1PB1 LINE L1 6120 6466 0 4073 79 9 2 chrX 60615334 60615893 -116358247 + L1PA13 LINE L1 5601 6163 0 404 336 17 0 chrX 60615894 60616013 -116358127 + MER5A DNA MER1_type 69 189 0 378 0 0 0 chrX 60617327 60617369 -116356771 + (TG)n Simple_repeat Simple_repeat 2 43 0 1834 149 3 10 chrX 60618274 60618563 -116355577 - AluJo SINE Alu -25 287 1 2160 117 67 65 chrX 60619269 60619749 -116354391 - L1MB8 LINE L1 -5 6173 5693 294 318 37 0 chrX 60620009 60620116 -116354024 + MIR SINE MIR 85 195 -67 228 260 48 125 chrX 60621519 60621623 -116352517 - MER5A DNA MER1_type -19 170 75 2222 146 3 3 chrX 60622200 60622570 -116351570 - L1PB1 LINE L1 0 6867 6498 14157 193 33 6 chrX 60622594 60626140 -116348000 - L1PB1 LINE L1 -762 6100 2222 216 0 0 0 chrX 60626140 60626164 -116347976 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 14157 193 33 6 chrX 60626164 60627794 -116346346 - L1PB1 LINE L1 -4640 2222 638 1072 280 36 7 chrX 60627839 60628250 -116345890 - L1PB1 LINE L1 -6312 551 129 25 51 0 0 chrX 60628377 60628416 -116345724 + AT_rich Low_complexity Low_complexity 1 39 0 512 127 200 61 chrX 60628739 60628904 -116345236 - MER53 DNA DNA -1 188 1 373 322 48 0 chrX 60629398 60629544 -116344596 + MIR SINE MIR 102 254 -8 192 135 0 0 chrX 60629835 60629872 -116344268 + (TAG)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chrX 60629912 60629934 -116344206 + AT_rich Low_complexity Low_complexity 1 22 0 5635 213 16 16 chrX 60630170 60631639 -116342501 + L1 LINE L1 2920 4389 -1757 515 155 0 24 chrX 60631658 60631742 -116342398 + FLAM SINE Alu 46 127 -16 5838 119 10 2 chrX 60631751 60633516 -116340624 + L1PA16 LINE L1 4376 6161 -5 26 50 0 0 chrX 60636780 60636820 -116337320 + AT_rich Low_complexity Low_complexity 1 40 0 215 300 0 122 chrX 60636883 60636973 -116337167 - L2 LINE L2 -43 3229 3151 25 31 0 0 chrX 60637691 60637723 -116336417 + AT_rich Low_complexity Low_complexity 1 32 0 1786 178 0 41 chrX 60640528 60640843 -116333297 - AluJo SINE Alu -10 302 1 539 191 65 12 chrX 60641492 60641660 -116332480 - MER113 DNA MER1_type? -343 178 2 1864 148 0 30 chrX 60643056 60643361 -116330779 + AluJb SINE Alu 1 296 -16 448 305 41 0 chrX 60644035 60644281 -116329859 + L1ME4a LINE L1 5641 5896 -225 386 195 49 16 chrX 60644459 60644582 -116329558 + L1ME4a LINE L1 5984 6110 -11 257 295 42 16 chrX 60645095 60645285 -116328855 - L1ME LINE L1 -238 5883 5689 723 189 30 0 chrX 60645460 60645592 -116328548 - AluJb SINE Alu -176 136 1 380 151 119 34 chrX 60648226 60648334 -116325806 - MER5A DNA MER1_type 0 189 14 2619 194 40 58 chrX 60648334 60649115 -116325025 - L1M4c LINE L1 -3093 3289 2522 2021 154 0 13 chrX 60649115 60649420 -116324720 - AluSx SINE Alu -11 301 1 2619 194 40 58 chrX 60649420 60649448 -116324692 - L1M4c LINE L1 -3860 2522 2495 1780 194 0 0 chrX 60649451 60649740 -116324400 - AluJo SINE Alu -23 289 1 341 233 178 0 chrX 60649783 60649910 -116324230 - FLAM_A SINE Alu -7 126 3 1066 224 131 10 chrX 60649910 60650321 -116323819 - L1M4c LINE L1 -4052 2511 2051 26244 104 7 14 chrX 60650387 60653708 -116320432 - L1PA8 LINE L1 -5 6482 3212 2103 78 0 21 chrX 60653708 60653990 -116320150 - AluY SINE Alu -4 307 32 26244 104 7 14 chrX 60653990 60655839 -116318301 - L1PA8 LINE L1 -3275 3212 1352 21 57 0 0 chrX 60655839 60655874 -116318266 + AT_rich Low_complexity Low_complexity 1 35 0 40288 53 4 0 chrX 60656073 60662209 -116311931 - L1PA4 LINE L1 0 6155 1 8254 132 23 1 chrX 60662213 60663537 -116310603 - L1PA8 LINE L1 -5102 1359 6 911 237 47 9 chrX 60663545 60663852 -116310288 - L1M4c LINE L1 -4573 1990 1519 300 164 198 26 chrX 60663851 60663967 -116310173 - L1M4c LINE L1 -3988 2396 2261 * 1390 223 67 41 chrX 60663977 60664367 -116309773 - MER68 LTR ERV1 0 562 163 5294 125 13 25 chrX 60664391 60664772 -116309368 - L1PB3 LINE L1 0 6211 5827 1393 166 78 53 chrX 60664772 60665056 -116309084 - AluJb SINE Alu -21 291 1 5294 125 13 25 chrX 60665056 60665744 -116308396 - L1PB3 LINE L1 -384 5827 5153 3419 118 8 6 chrX 60665745 60666255 -116307885 + MER9 LTR ERVK 1 511 0 3821 92 9 21 chrX 60666255 60666830 -116307310 + HERVK9 LTR ERVK 1 568 -5348 * 5696 73 1 0 chrX 60666828 60667580 -116306560 + HERVK9 LTR ERVK 1424 2176 -3740 318 49 0 0 chrX 60667578 60667619 -116306521 + HERVK9 LTR ERVK 3901 3941 -1975 * 225 0 0 0 chrX 60667696 60667721 -116306419 + (T)n Simple_repeat Simple_repeat 1 25 0 1030 166 48 0 chrX 60668273 60668460 -116305680 - L1PA16 LINE L1 -8 6158 5963 2299 103 0 0 chrX 60668669 60668959 -116305181 + AluSg SINE Alu 1 290 -20 6904 105 2 0 chrX 60670554 60671537 -116302603 + HERVK9 LTR ERVK 4650 5634 -282 2106 53 4 0 chrX 60671646 60671911 -116302229 + HERVK9 LTR ERVK 5651 5916 0 3357 102 24 6 chrX 60671912 60672413 -116301727 + MER9 LTR ERVK 2 511 0 11658 204 43 13 chrX 60672413 60676462 -116297678 - L1PB3 LINE L1 -1046 5157 988 6068 118 41 39 chrX 60676474 60678915 -116295225 - SVA Other Other -518 1386 3 5577 173 8 6 chrX 60678915 60679906 -116294234 - L1PB3 LINE L1 -5211 993 1 2025 264 18 30 chrX 60679877 60680584 -116293556 - L1PBa LINE L1 -5230 974 276 * 398 261 62 75 chrX 60680645 60680806 -116293334 - MER77 LTR ERV1 -446 159 1 23 33 0 0 chrX 60680855 60680885 -116293255 + AT_rich Low_complexity Low_complexity 1 30 0 1909 136 14 54 chrX 60681431 60681800 -116292340 - MLT1B LTR MaLR -32 358 5 334 187 53 0 chrX 60682010 60682085 -116292055 - L1MB8 LINE L1 -203 5975 5897 * 3655 207 45 8 chrX 60682079 60683017 -116291123 - L1MB8 LINE L1 -1144 5002 4030 1108 247 33 9 chrX 60683011 60683492 -116290648 - L1MEc LINE L1 -3737 2478 2022 * 1101 208 64 8 chrX 60683515 60683779 -116290361 - MER21B LTR ERV1 -11 852 574 3171 114 29 4 chrX 60683808 60684327 -116289813 - L1MA2 LINE L1 -3 6301 5770 * 6665 160 10 14 chrX 60684320 60685085 -116289055 - L1PA13 LINE L1 -4 6159 5393 2439 66 7 0 chrX 60685085 60685389 -116288751 - AluY SINE Alu -5 306 1 6665 160 10 14 chrX 60685389 60686672 -116287468 - L1PA13 LINE L1 -770 5393 4114 6851 184 18 39 chrX 60686683 60686732 -116287408 - L1PA13 LINE L1 -2018 4128 4080 4801 62 29 0 chrX 60686732 60687348 -116286792 - L1PA8 LINE L1 -13 6159 5526 6851 184 18 39 chrX 60687348 60688769 -116285371 - L1PA13 LINE L1 -2066 4080 2631 198 103 0 0 chrX 60688769 60688798 -116285342 + (TG)n Simple_repeat Simple_repeat 2 30 0 6851 184 18 39 chrX 60688798 60688839 -116285301 - L1PA13 LINE L1 -3515 2631 2591 441 0 0 0 chrX 60688839 60688888 -116285252 + (TG)n Simple_repeat Simple_repeat 2 50 0 6851 184 18 39 chrX 60688888 60689018 -116285122 - L1PA13 LINE L1 -3555 2591 2519 2231 113 54 25 chrX 60689019 60689373 -116284767 + THE1B LTR MaLR 1 364 0 11352 103 8 1 chrX 60689373 60690941 -116283199 + THE1B-int LTR MaLR 1 1580 0 387 17 85 34 chrX 60690941 60691000 -116283140 + THE1B LTR MaLR 1 62 -302 17421 101 11 1 chrX 60691010 60694393 -116279747 - L1PA7 LINE L1 -4 6801 3392 1909 177 13 29 chrX 60694394 60694846 -116279294 - L1PA7 LINE L1 -4736 2051 1607 8042 153 27 59 chrX 60694877 60695599 -116278541 - L1 LINE L1 -3249 4316 3572 1857 167 7 0 chrX 60695599 60695892 -116278248 - AluSx SINE Alu -17 295 1 8042 153 27 59 chrX 60695892 60697123 -116277017 - L1 LINE L1 -3993 3572 2438 1949 138 9 75 chrX 60697123 60697457 -116276683 - AluSx SINE Alu 0 312 1 8042 153 27 59 chrX 60697457 60697933 -116276207 - L1 LINE L1 -5127 2438 1948 6261 136 61 1 chrX 60697933 60699042 -116275098 - HSMAR2 DNA Mariner -124 1178 3 3013 219 96 28 chrX 60699044 60699688 -116274452 - L1M4 LINE L1 -1168 5789 5054 1464 174 52 39 chrX 60699688 60699993 -116274147 - AluJo SINE Alu -3 309 1 3013 219 96 28 chrX 60699993 60700326 -116273814 - L1M4 LINE L1 -1903 5054 4745 1697 267 28 18 chrX 60700326 60700828 -116273312 - L1M4 LINE L1 -6352 507 1 1768 244 91 49 chrX 60700830 60701633 -116272507 - L1MEc LINE L1 -5088 1308 472 2844 3 0 0 chrX 60702989 60703295 -116270845 + AluY SINE Alu 2 307 -4 3775 140 36 0 chrX 60704194 60704807 -116269333 + MER41B LTR ERV1 1 635 0 4735 136 36 9 chrX 60704807 60705594 -116268546 + MER41B-int LTR ERV1 1 808 -5138 3557 124 31 16 chrX 60705589 60706280 -116267860 + MER41B-int LTR ERV1 1187 1992 -3954 * 4385 146 54 9 chrX 60706283 60707099 -116267041 + MER41B-int LTR ERV1 2777 3629 -3908 3882 82 21 8 chrX 60707101 60707731 -116266409 + MER41B-int LTR ERV1 3308 3945 -2001 9254 99 25 4 chrX 60707771 60709198 -116264942 + MER41B-int LTR ERV1 4491 5946 0 3937 135 18 0 chrX 60709198 60709822 -116264318 + MER41B LTR ERV1 1 635 0 1490 76 25 0 chrX 60710310 60710508 -116263632 - L1PA13 LINE L1 -7 6156 5954 312 27 0 0 chrX 60711861 60711898 -116262242 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 288 30 0 chrX 60712455 60712521 -116261619 + MIR SINE MIR 79 146 -116 2463 94 0 0 chrX 60713075 60713383 -116260757 - AluSp SINE Alu -5 308 1 307 226 244 43 chrX 60715570 60715800 -116258340 + L1ME4a LINE L1 5798 6073 -48 244 400 64 8 chrX 60715856 60715981 -116258159 + MIR SINE MIR 20 151 -111 207 229 0 0 chrX 60715988 60716023 -116258117 + L2 LINE L2 3255 3289 -24 415 269 86 6 chrX 60716029 60716204 -116257936 + L1ME LINE L1 5550 5738 -383 2326 101 0 49 chrX 60716227 60716634 -116257506 - L1MA2 LINE L1 0 6304 5918 2475 42 3 13 chrX 60716634 60716946 -116257194 + L1PA7 LINE L1 5843 6152 -2 1447 245 60 41 chrX 60717050 60717210 -116256930 + L1ME1 LINE L1 5603 5759 -407 270 0 0 0 chrX 60717210 60717240 -116256900 + (TG)n Simple_repeat Simple_repeat 2 31 0 1447 245 60 41 chrX 60717240 60717613 -116256527 + L1ME1 LINE L1 5759 6146 -20 503 319 57 3 chrX 60717660 60717961 -116256179 - L1ME LINE L1 -502 5619 5303 5504 107 23 11 chrX 60717968 60719234 -116254906 - L1PA16 LINE L1 -9 6157 4873 246 209 101 8 chrX 60719238 60719367 -116254773 - L1ME LINE L1 -815 5331 5191 259 275 11 11 chrX 60719573 60719664 -116254476 - L1MC/D LINE L1 -391 5779 5697 2007 106 35 0 chrX 60719775 60720057 -116254083 + AluSx SINE Alu 1 292 -20 263 275 70 14 chrX 60720290 60720432 -116253708 - MER103 DNA DNA -9 157 8 762 282 37 5 chrX 60720692 60720908 -116253232 + MIR SINE MIR 10 232 -30 340 270 120 21 chrX 60723561 60723712 -116250428 + MIR3 SINE MIR 15 180 -61 189 289 62 10 chrX 60723844 60723941 -116250199 + L2 LINE L2 2150 2251 -1063 184 297 171 36 chrX 60724689 60724800 -116249340 + L2 LINE L2 3139 3264 -8 233 203 78 16 chrX 60725436 60725500 -116248640 - MIR SINE MIR -81 127 60 406 225 228 34 chrX 60725627 60725789 -116248351 + MIR SINE MIR 7 178 -62 214 211 0 0 chrX 60725788 60725826 -116248314 + L2 LINE L2 3265 3302 -11 * 2440 75 0 13 chrX 60726287 60726593 -116247547 - AluY SINE Alu -9 302 1 232 301 85 20 chrX 60727924 60728077 -116246063 + L2 LINE L2 2694 2856 -458 1903 147 7 10 chrX 60729036 60729328 -116244812 - AluJb SINE Alu -21 291 1 4399 201 43 20 chrX 60729572 60731347 -116242793 + L1MA4 LINE L1 587 2382 -3946 * 19229 148 25 2 chrX 60731341 60734620 -116239520 + L1MA3 LINE L1 19 3372 -4193 3303 85 21 0 chrX 60734621 60735056 -116239084 - MLT2A1 LTR ERVL 0 444 1 5960 65 1 9 chrX 60735056 60735860 -116238280 - HERVL-A1 LTR ERVL 0 5654 4857 3234 68 2 0 chrX 60735850 60736279 -116237861 - HERVL-A1 LTR ERVL -5224 430 1 * 3070 73 36 25 chrX 60736279 60736718 -116237422 - MLT2A1 LTR ERVL 0 444 1 2928 182 22 36 chrX 60736718 60737707 -116236433 + L1MA3 LINE L1 3369 4348 -3217 5613 156 58 2 chrX 60737708 60739596 -116234544 + L1MA3 LINE L1 5510 7534 -190 2286 109 0 0 chrX 60739596 60739890 -116234250 + AluSx SINE Alu 1 294 -18 5613 156 58 2 chrX 60739890 60740093 -116234047 + L1MA3 LINE L1 7534 7724 0 231 105 0 0 chrX 60740109 60740147 -116233993 + L1MA4 LINE L1 2356 2393 -3935 18943 151 18 7 chrX 60740152 60743563 -116230577 + L1PA14 LINE L1 1 3463 -4121 14572 174 6 3 chrX 60743807 60747945 -116226195 + L1PA14 LINE L1 3458 7596 -3 14216 165 26 49 chrX 60747944 60749530 -116224610 + L1MA4 LINE L1 2382 4002 -2480 * 7050 62 3 155 chrX 60749530 60750781 -116223359 + SVA Other Other 325 1385 -1 14216 165 26 49 chrX 60750781 60751761 -116222379 + L1MA4 LINE L1 4002 5002 -1480 1847 164 20 0 chrX 60751761 60752065 -116222075 + AluSx SINE Alu 1 310 -2 2365 87 3 0 chrX 60752074 60752372 -116221768 + AluY SINE Alu 9 307 -4 14216 165 26 49 chrX 60752372 60753767 -116220373 + L1MA4 LINE L1 5010 6297 -185 2340 71 0 14 chrX 60753767 60754063 -116220077 - AluY SINE Alu -19 292 1 14216 165 26 49 chrX 60754063 60754228 -116219912 + L1MA4 LINE L1 6297 6464 -18 5230 165 22 6 chrX 60754369 60754985 -116219155 + L1MA9 LINE L1 5186 5831 -481 2241 101 0 3 chrX 60754985 60755282 -116218858 - AluY SINE Alu -15 296 1 5230 165 22 6 chrX 60755282 60755734 -116218406 + L1MA9 LINE L1 5831 6274 -38 1686 94 9 0 chrX 60756010 60756234 -116217906 + AluSg/x SINE Alu 75 300 -12 201 39 0 0 chrX 60756245 60756271 -116217869 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 197 271 52 52 chrX 60756292 60756388 -116217752 + L3b LINE CR1 1137 1232 -351 2350 82 0 28 chrX 60756971 60757289 -116216851 - AluY SINE Alu -2 309 1 2112 110 0 27 chrX 60757325 60757625 -116216515 - AluSx SINE Alu -20 292 1 351 269 108 39 chrX 60757851 60757981 -116216159 + L3b LINE CR1 1386 1524 -59 256 266 18 64 chrX 60758135 60758244 -116215896 + MIR SINE MIR 88 191 -71 3950 98 16 0 chrX 60761109 60761680 -116212460 + L1PA7 LINE L1 4733 5312 -834 7570 31 1 0 chrX 60761680 60762664 -116211476 + L1PA4 LINE L1 5171 6155 0 6818 54 3 0 chrX 60762664 60763513 -116210627 + L1PA7 LINE L1 5293 6151 -3 304 261 45 45 chrX 60763586 60763697 -116210443 - L1ME4a LINE L1 -55 6066 5956 851 256 142 28 chrX 60763827 60763930 -116210210 - L1ME4a LINE L1 -223 5898 5808 421 40 66 0 chrX 60763930 60764006 -116210134 + (TA)n Simple_repeat Simple_repeat 1 81 0 851 256 142 28 chrX 60764006 60764262 -116209878 - L1ME4a LINE L1 -313 5808 5498 1861 14 0 0 chrX 60765360 60765572 -116208568 - L1PA3 LINE L1 -4 6151 5940 811 208 0 26 chrX 60765582 60765736 -116208404 - AluJo SINE Alu -30 282 133 2714 121 27 7 chrX 60765755 60766194 -116207946 - L1PA15 LINE L1 -9 6156 5709 786 153 0 83 chrX 60766194 60766351 -116207789 - AluJo SINE Alu -168 144 1 567 294 18 41 chrX 60769344 60769565 -116204575 + MIR SINE MIR 6 221 -41 28 48 0 0 chrX 60770205 60770247 -116203893 + AT_rich Low_complexity Low_complexity 1 42 0 882 138 42 0 chrX 60772975 60773142 -116200998 + L1MC3 LINE L1 6924 7097 -688 291 264 22 22 chrX 60773142 60773233 -116200907 + MLT1F1 LTR MaLR 35 125 -442 2975 152 48 16 chrX 60773238 60773803 -116200337 + L1MC3 LINE L1 7202 7784 -1 181 300 33 17 chrX 60774367 60774427 -116199713 + MIR SINE MIR 87 147 -115 429 301 21 14 chrX 60774508 60774651 -116199489 - MIR3 SINE MIR -6 202 59 309 89 0 0 chrX 60774737 60774782 -116199358 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 1013 300 61 39 chrX 60775097 60775251 -116198889 + L2 LINE L2 2562 2711 -603 1803 166 0 23 chrX 60775251 60775553 -116198587 + AluJo SINE Alu 6 300 -12 1013 300 61 39 chrX 60775553 60775805 -116198335 + L2 LINE L2 2711 2977 -337 12041 185 16 14 chrX 60775835 60776208 -116197932 - L1PB1 LINE L1 0 6151 5780 306 0 0 0 chrX 60776208 60776242 -116197898 + (TG)n Simple_repeat Simple_repeat 2 35 0 195 42 0 0 chrX 60776241 60776265 -116197875 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 12041 185 16 14 chrX 60776242 60779384 -116194756 - L1PB1 LINE L1 -371 5780 2652 2368 56 0 0 chrX 60779384 60779724 -116194416 - AluY SINE Alu 0 340 1 12041 185 16 14 chrX 60779724 60779800 -116194340 - L1PB1 LINE L1 -3499 2652 2578 40729 59 3 17 chrX 60779829 60786075 -116188065 - L1PA3 LINE L1 0 6155 1 241 65 0 43 chrX 60786134 60786180 -116187960 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 7580 53 5 2 chrX 60786180 60787913 -116186227 - L1PA3 LINE L1 -13 6142 4407 837 64 0 0 chrX 60787919 60788029 -116186111 - L1PA5 LINE L1 0 6154 6045 2912 48 0 0 chrX 60788030 60788382 -116185758 + L1P2 LINE L1 5422 5773 -381 * 18451 60 8 8 chrX 60788380 60790869 -116183271 - L1PA3 LINE L1 -1724 4422 1934 329 307 97 17 chrX 60790925 60791101 -116183039 - MIR SINE MIR -56 206 17 342 315 39 46 chrX 60791444 60791574 -116182566 + MIR SINE MIR 13 141 -121 241 279 52 29 chrX 60792028 60792164 -116181976 - L1MC4 LINE L1 -1 8041 7903 1918 202 66 25 chrX 60792270 60792755 -116181385 - L1ME2 LINE L1 -19 6145 5641 456 247 85 21 chrX 60793028 60793263 -116180877 + L1MC5 LINE L1 7609 7858 -103 245 247 86 54 chrX 60793307 60793400 -116180740 - L2 LINE L2 -232 3081 2986 1214 221 130 12 chrX 60793400 60793442 -116180698 - MLT2B2 LTR ERVL 0 515 479 477 0 0 0 chrX 60793442 60793495 -116180645 + (TG)n Simple_repeat Simple_repeat 2 54 0 1214 221 130 12 chrX 60793495 60793791 -116180349 - MLT2B2 LTR ERVL -36 479 137 4232 44 13 2 chrX 60794005 60794552 -116179588 - L1P2 LINE L1 -348 5806 5254 1941 37 0 0 chrX 60794548 60794790 -116179350 + L1P2 LINE L1 5015 5256 -890 * 842 161 81 0 chrX 60794790 60794964 -116179176 - MER33 DNA MER1_type -127 197 10 641 239 150 13 chrX 60795079 60795305 -116178835 + MIR SINE MIR 3 259 -3 298 300 126 7 chrX 60795642 60795804 -116178336 + MER5A DNA MER1_type 1 189 0 237 247 0 62 chrX 60795972 60796064 -116178076 + T-rich Low_complexity Low_complexity 1 87 0 207 0 0 0 chrX 60796064 60796087 -116178053 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7079 16 0 0 chrX 60796093 60796899 -116177241 - L1PA2 LINE L1 -13 6142 5337 4061 25 0 2 chrX 60796887 60797388 -116176752 + L1PA2 LINE L1 4846 5345 -801 * 1830 154 70 25 chrX 60797417 60797774 -116176366 + THE1C LTR MaLR 2 374 -1 4099 220 21 31 chrX 60797775 60798928 -116175212 + L1 LINE L1 1903 3045 -3101 419 81 54 14 chrX 60799261 60799335 -116174805 + L1P1 LINE L1 5552 5628 -527 23 33 0 0 chrX 60800120 60800150 -116173990 + AT_rich Low_complexity Low_complexity 1 30 0 12553 93 11 5 chrX 60800398 60802885 -116171255 - L1PA7 LINE L1 0 6154 3660 2263 120 0 7 chrX 60803805 60804113 -116170027 + AluSx SINE Alu 1 306 -6 461 153 211 22 chrX 60804113 60804274 -116169866 + L1MB7 LINE L1 5668 5870 -314 755 218 35 30 chrX 60804276 60804478 -116169662 + L1PBa LINE L1 957 1159 -5704 5971 238 37 18 chrX 60804500 60807239 -116166901 + L1PBa LINE L1 80 1926 -4937 15008 145 27 16 chrX 60807251 60809780 -116164360 + L1PBa LINE L1 3 2560 -4303 1909 157 58 28 chrX 60809780 60810144 -116163996 + THE1C LTR MaLR 1 375 0 3427 154 12 63 chrX 60810152 60810813 -116163327 + THE1C-int LTR MaLR 9 635 -945 794 171 14 0 chrX 60810805 60810945 -116163195 + THE1C-int LTR MaLR 1491 1632 -19 * 5513 19 0 0 chrX 60810955 60811544 -116162596 - L1PA3 LINE L1 0 6155 5567 2858 18 0 0 chrX 60811560 60811891 -116162249 + L1PA3 LINE L1 5254 5584 -571 * 17899 124 48 13 chrX 60811887 60813931 -116160209 - L1PBa LINE L1 -3553 3309 1339 2447 82 0 19 chrX 60813931 60814248 -116159892 - AluY SINE Alu 0 311 1 17899 124 48 13 chrX 60814248 60815288 -116158852 - L1PBa LINE L1 -5523 1339 108 2433 88 0 0 chrX 60815288 60815593 -116158547 - AluY SINE Alu -6 305 1 17899 124 48 13 chrX 60815593 60815703 -116158437 - L1PBa LINE L1 -6754 108 3 1312 210 16 193 chrX 60815719 60815890 -116158250 + MLT2B3 LTR ERVL 3 203 -351 11152 42 0 1 chrX 60815890 60816375 -116157765 + L1PA5 LINE L1 4063 4547 -1607 2706 29 0 0 chrX 60816375 60816681 -116157459 + AluY SINE Alu 1 306 -5 11152 42 0 1 chrX 60816681 60818302 -116155838 + L1PA5 LINE L1 4547 6154 0 432 0 0 0 chrX 60818312 60818360 -116155780 + (TA)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chrX 60818359 60818384 -116155756 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 1312 210 16 193 chrX 60818360 60818869 -116155271 + MLT2B3 LTR ERVL 213 552 -2 4275 273 60 5 chrX 60818873 60820148 -116153992 + HERVL-B3 LTR ERVL 21 1365 -4289 * 6803 138 22 7 chrX 60820146 60820254 -116153886 + ERVL LTR ERVL 3945 4050 -1714 1886 190 43 6 chrX 60820254 60820606 -116153534 - MLT1A1 LTR MaLR 0 365 1 6803 138 22 7 chrX 60820606 60821533 -116152607 + ERVL LTR ERVL 4050 4996 -768 924 138 42 0 chrX 60822305 60822472 -116151668 + L1MC3 LINE L1 6924 7097 -688 292 264 22 22 chrX 60822472 60822563 -116151577 + MLT1F1 LTR MaLR 35 125 -442 3072 155 48 16 chrX 60822564 60823133 -116151007 + L1MC3 LINE L1 7198 7784 -1 416 301 21 14 chrX 60823838 60823981 -116150159 - MIR3 SINE MIR -6 202 59 309 89 0 0 chrX 60824067 60824112 -116150028 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 996 300 61 39 chrX 60824427 60824581 -116149559 + L2 LINE L2 2562 2711 -603 1802 166 0 23 chrX 60824581 60824883 -116149257 + AluJo SINE Alu 6 300 -12 996 300 61 39 chrX 60824883 60825135 -116149005 + L2 LINE L2 2711 2977 -337 12521 184 17 14 chrX 60825165 60825538 -116148602 - L1PB1 LINE L1 0 6867 6496 378 0 0 0 chrX 60825538 60825580 -116148560 + (TG)n Simple_repeat Simple_repeat 2 43 0 195 42 0 0 chrX 60825579 60825603 -116148537 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 12521 184 17 14 chrX 60825580 60828722 -116145418 - L1PB1 LINE L1 -371 6496 3368 2381 56 0 0 chrX 60828722 60829062 -116145078 - AluY SINE Alu 0 340 1 12521 184 17 14 chrX 60829062 60829154 -116144986 - L1PB1 LINE L1 -3499 3368 3278 5542 17 0 0 chrX 60829167 60829756 -116144384 - L1PA3 LINE L1 0 6155 5567 2858 18 0 0 chrX 60829772 60830103 -116144037 + L1PA3 LINE L1 5254 5584 -571 * 17899 124 48 13 chrX 60830099 60832143 -116141997 - L1PB1 LINE L1 -3553 3309 1339 2447 82 0 19 chrX 60832143 60832460 -116141680 - AluY SINE Alu 0 311 1 17899 124 48 13 chrX 60832460 60833500 -116140640 - L1PB1 LINE L1 -5523 1339 108 2451 86 0 0 chrX 60833500 60833804 -116140336 - AluY SINE Alu -7 304 1 17899 124 48 13 chrX 60833804 60833914 -116140226 - L1PB1 LINE L1 -6754 108 3 1312 210 16 193 chrX 60833930 60834101 -116140039 + MLT2B3 LTR ERVL 3 203 -351 11178 41 0 0 chrX 60834101 60834586 -116139554 + L1PA5 LINE L1 4063 4547 -1607 2706 29 0 0 chrX 60834586 60834892 -116139248 + AluY SINE Alu 1 306 -5 11178 41 0 0 chrX 60834892 60836512 -116137628 + L1PA5 LINE L1 4546 6154 0 432 0 0 0 chrX 60836522 60836570 -116137570 + (TA)n Simple_repeat Simple_repeat 1 48 0 225 0 0 0 chrX 60836569 60836594 -116137546 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 1312 210 16 193 chrX 60836570 60837079 -116137061 + MLT2B3 LTR ERVL 213 552 -2 4305 273 59 5 chrX 60837083 60838359 -116135781 + HERVL-B3 LTR ERVL 21 1365 -4289 * 7230 146 20 7 chrX 60838357 60838465 -116135675 + ERVL-B1 LTR ERVL 3945 4050 -1714 1886 190 43 6 chrX 60838465 60838817 -116135323 - MLT1A1 LTR MaLR 0 365 1 7230 146 20 7 chrX 60838817 60839835 -116134305 + ERVL-B1 LTR ERVL 4050 5086 -678 500 129 0 0 chrX 60839834 60839904 -116134236 - ERVL LTR ERVL -912 4852 4783 * 4322 137 28 20 chrX 60839937 60840651 -116133489 + ERVL-B1 LTR ERVL 5038 5757 -7 2290 192 114 19 chrX 60840651 60841083 -116133057 + MLT2B1 LTR ERVL 1 483 -37 477 0 0 0 chrX 60841083 60841136 -116133004 + (CA)n Simple_repeat Simple_repeat 2 54 0 2290 192 114 19 chrX 60841136 60841178 -116132962 + MLT2B1 LTR ERVL 483 520 0 239 247 86 54 chrX 60841178 60841271 -116132869 + L2 LINE L2 2986 3081 -232 497 247 85 21 chrX 60841315 60841550 -116132590 - L1MC5 LINE L1 -103 7858 7609 1994 202 67 26 chrX 60841821 60842311 -116131829 + L1ME2 LINE L1 5639 6148 -16 253 290 48 28 chrX 60842405 60842550 -116131590 + L1MC4 LINE L1 7894 8041 -1 331 315 39 46 chrX 60843004 60843134 -116131006 - MIR SINE MIR -121 141 13 295 307 97 17 chrX 60843477 60843653 -116130487 + MIR SINE MIR 17 206 -56 18915 60 8 8 chrX 60843709 60846198 -116127942 + L1PA6 LINE L1 1934 4422 -1724 2975 45 0 0 chrX 60846196 60846548 -116127592 - L1P2 LINE L1 -381 5773 5422 * 894 64 0 0 chrX 60846549 60846659 -116127481 + L1PA5 LINE L1 6045 6154 0 * 8145 54 17 2 chrX 60846657 60848399 -116125741 + L1PA6 LINE L1 4398 6154 0 1425 86 0 0 chrX 60848399 60848585 -116125555 + L1P3 LINE L1 5461 5646 -526 560 304 112 36 chrX 60848713 60848937 -116125203 + MIR SINE MIR 17 257 -5 246 200 0 0 chrX 60848990 60849040 -116125100 - L1ME LINE L1 -664 5500 5451 825 188 63 27 chrX 60849073 60849352 -116124788 - L1ME LINE L1 -722 5452 5163 541 230 16 8 chrX 60849356 60849482 -116124658 + L1ME3 LINE L1 5539 5665 -505 336 24 0 0 chrX 60849522 60849563 -116124577 + (CA)n Simple_repeat Simple_repeat 2 42 0 267 206 48 16 chrX 60849580 60849643 -116124497 - MER2 DNA MER2_type -1 344 280 1213 176 15 0 chrX 60849678 60849883 -116124257 - MER2 DNA MER2_type -136 209 2 1411 231 68 16 chrX 60849894 60850360 -116123780 + L1ME3 LINE L1 5676 6161 -9 22 94 0 0 chrX 60850370 60850434 -116123706 + AT_rich Low_complexity Low_complexity 1 64 0 324 279 54 0 chrX 60850522 60850633 -116123507 + MER20B DNA MER1_type 36 152 -631 22328 186 24 36 chrX 60850676 60851752 -116122388 + L1PA11 LINE L1 1 1088 -6524 2264 112 3 0 chrX 60851752 60852056 -116122084 - AluSp SINE Alu -8 305 1 22328 186 24 36 chrX 60852056 60855334 -116118806 + L1PA11 LINE L1 1088 5064 -2548 6851 46 30 0 chrX 60855334 60855457 -116118683 + L1PA5 LINE L1 5164 5282 -872 279 0 0 0 chrX 60855457 60855488 -116118652 + (CAA)n Simple_repeat Simple_repeat 3 33 0 6851 46 30 0 chrX 60855488 60856329 -116117811 + L1PA5 LINE L1 5282 6154 0 22328 186 24 36 chrX 60856329 60858369 -116115771 + L1PA11 LINE L1 5064 7127 -485 506 88 0 0 chrX 60858370 60858438 -116115702 + THE1C LTR MaLR 252 319 -56 207 0 0 0 chrX 60858439 60858462 -116115678 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3436 103 16 0 chrX 60858462 60858949 -116115191 + L1PA11 LINE L1 7118 7612 0 4318 175 24 34 chrX 60859620 60859923 -116114217 - L1MB5 LINE L1 -8 6166 5861 2319 86 7 3 chrX 60859923 60860225 -116113915 - AluSp SINE Alu -10 303 1 4318 175 24 34 chrX 60860225 60861119 -116113021 - L1MB5 LINE L1 -313 5861 4984 3916 152 37 26 chrX 60861141 60861899 -116112241 - L1MB3 LINE L1 -44 6375 5610 2568 99 32 5 chrX 60861899 60862274 -116111866 + MLT2A1 LTR ERVL 1 385 -59 660 61 0 0 chrX 60862280 60862362 -116111778 + HERVL-A1 LTR ERVL 209 290 -5364 * 24861 76 11 2 chrX 60862359 60865563 -116108577 + HERVL-A1 LTR ERVL 1851 5085 -569 2743 75 16 0 chrX 60865558 60865931 -116108209 + HERVL-A1 LTR ERVL 5276 5654 0 * 2909 88 18 5 chrX 60865931 60866330 -116107810 + MLT2A1 LTR ERVL 1 404 -40 225 0 0 0 chrX 60866330 60866355 -116107785 + (CA)n Simple_repeat Simple_repeat 2 26 0 344 109 0 120 chrX 60866397 60866455 -116107685 + MLT2A1 LTR ERVL 360 405 -39 333 0 0 0 chrX 60866455 60866492 -116107648 + (CA)n Simple_repeat Simple_repeat 2 38 0 344 109 0 120 chrX 60866492 60866525 -116107615 + MLT2A1 LTR ERVL 405 440 -4 237 224 86 0 chrX 60866533 60866591 -116107549 - L1MB3 LINE L1 -800 5610 5548 * 253 191 0 44 chrX 60866564 60866632 -116107508 + L1PA16 LINE L1 6093 6157 -9 2355 42 3 11 chrX 60866657 60866977 -116107163 + AluY SINE Alu 1 318 0 3970 235 40 15 chrX 60866979 60868118 -116106022 - L1MB3 LINE L1 -848 5534 4368 1213 256 25 0 chrX 60868119 60868482 -116105658 - L1MB3 LINE L1 -2520 3862 3491 254 161 0 18 chrX 60868482 60868538 -116105602 + CT-rich Low_complexity Low_complexity 4 58 0 313 186 58 0 chrX 60868573 60868659 -116105481 + CT-rich Low_complexity Low_complexity 5 95 0 3291 239 49 12 chrX 60868661 60869863 -116104277 - L1MB3 LINE L1 -2884 3498 2256 1582 194 14 0 chrX 60870279 60870558 -116103582 - AluJo SINE Alu -27 285 3 239 327 131 33 chrX 60871230 60871383 -116102757 - MIR SINE MIR -54 208 41 1968 169 6 8 chrX 60871399 60871755 -116102385 - L1PB4 LINE L1 -8 6148 5794 21 95 0 0 chrX 60872306 60872369 -116101771 + AT_rich Low_complexity Low_complexity 1 63 0 254 197 0 33 chrX 60872526 60872587 -116101553 - L1MC4a LINE L1 -1879 5929 5871 770 274 50 8 chrX 60872595 60872854 -116101286 - L1MC4a LINE L1 -2027 5781 5512 715 245 16 32 chrX 60873495 60873673 -116100467 - MIR3 SINE MIR -18 190 16 251 316 0 0 chrX 60873673 60873730 -116100410 - MER5A DNA MER1_type 0 189 133 1127 137 33 0 chrX 60873985 60874167 -116099973 + L1PA16 LINE L1 5970 6157 -9 273 268 49 12 chrX 60874743 60874825 -116099315 + MIR SINE MIR 26 110 -152 230 156 0 0 chrX 60874871 60874916 -116099224 - LTR66 LTR ERVL -172 438 394 402 147 0 0 chrX 60874916 60874984 -116099156 + (TA)n Simple_repeat Simple_repeat 2 69 0 1326 207 113 0 chrX 60875196 60875462 -116098678 + AluJo SINE Alu 1 296 -6 195 69 0 0 chrX 60875704 60875733 -116098407 + (CA)n Simple_repeat Simple_repeat 2 30 0 778 340 19 8 chrX 60875916 60876178 -116097962 - L3 LINE CR1 -7 1570 1306 3198 230 43 30 chrX 60876208 60877104 -116097036 + L1ME1 LINE L1 5254 6161 -5 16393 130 24 10 chrX 60877797 60880499 -116093641 + L1PB1 LINE L1 1 2740 -4123 13914 73 6 2 chrX 60880502 60882343 -116091797 + L1PA4 LINE L1 11 1858 -4288 3320 36 7 0 chrX 60882334 60882750 -116091390 - L1P LINE L1 -1455 4691 4273 * 6468 32 1 0 chrX 60882750 60883517 -116090623 + L1PA3 LINE L1 5383 6152 -3 28075 47 4 0 chrX 60883528 60887826 -116086314 + L1PA4 LINE L1 1843 6155 0 13626 187 19 9 chrX 60887816 60889815 -116084325 + L1PB1 LINE L1 2782 4759 -2121 * 2318 90 3 0 chrX 60889815 60890114 -116084026 - AluSp SINE Alu -13 300 1 13626 187 19 9 chrX 60890114 60892172 -116081968 + L1PB1 LINE L1 4759 6880 0 394 289 74 26 chrX 60892173 60892363 -116081777 + L1ME4a LINE L1 5764 5962 -159 42 20 0 0 chrX 60892604 60892653 -116081487 + AT_rich Low_complexity Low_complexity 1 49 0 5612 112 20 51 chrX 60892845 60893875 -116080265 - L1PA14 LINE L1 -3 6158 5118 2257 154 26 5 chrX 60893926 60894308 -116079832 - MLT1B LTR MaLR 0 390 1 1507 113 17 0 chrX 60894788 60895028 -116079112 + L1MA3 LINE L1 6062 6305 0 221 326 52 44 chrX 60895090 60895225 -116078915 + MIR3 SINE MIR 30 165 -43 620 267 134 13 chrX 60895333 60895565 -116078575 - MIR SINE MIR -1 261 2 1910 204 44 20 chrX 60895605 60896056 -116078084 - MLT1C LTR MaLR 0 467 6 34 0 0 0 chrX 60896607 60896641 -116077499 + AT_rich Low_complexity Low_complexity 1 34 0 731 287 94 0 chrX 60896760 60896962 -116077178 - MIR SINE MIR -41 221 1 221 132 0 19 chrX 60897743 60897796 -116076344 + (GA)n Simple_repeat Simple_repeat 1 52 0 686 34 0 0 chrX 60898076 60898164 -116075976 - L1PA4 LINE L1 0 6155 6068 226 222 97 42 chrX 60898216 60898288 -116075852 - LTR48 LTR ERV1 -642 145 70 526 299 163 28 chrX 60898932 60899220 -116074920 + L3 LINE CR1 1242 1568 -9 474 152 97 21 chrX 60899887 60900032 -116074108 - MER33 DNA MER1_type 0 324 169 7019 43 1 2 chrX 60900032 60900929 -116073211 - L1PA5 LINE L1 -5 6149 5254 1858 37 0 0 chrX 60900925 60901167 -116072973 + L1PA5 LINE L1 5015 5256 -890 * 789 161 81 0 chrX 60901167 60901341 -116072799 - MER33 DNA MER1_type -127 197 10 631 239 150 13 chrX 60901456 60901682 -116072458 + MIR SINE MIR 3 259 -3 296 300 126 7 chrX 60902019 60902181 -116071959 + MER5A DNA MER1_type 1 189 0 237 247 0 62 chrX 60902349 60902441 -116071699 + T-rich Low_complexity Low_complexity 1 87 0 207 0 0 0 chrX 60902441 60902464 -116071676 + (TTA)n Simple_repeat Simple_repeat 2 24 0 7840 12 0 0 chrX 60902470 60903543 -116070597 - L1PA2 LINE L1 -13 6142 5070 12982 21 1 0 chrX 60903543 60905126 -116069014 + L1PA2 LINE L1 3514 5097 -1049 423 320 18 14 chrX 60905234 60905453 -116068687 + L1MB5 LINE L1 44 263 -6279 1755 234 48 29 chrX 60905512 60906292 -116067848 + L1MB5 LINE L1 1509 2397 -4249 2167 154 37 0 chrX 60906306 60906688 -116067452 + L1P LINE L1 11 406 -5740 16832 54 0 0 chrX 60906688 60909629 -116064511 + L1PA4 LINE L1 3221 6152 -3 362 230 0 10 chrX 60909643 60909743 -116064397 + L1MB5 LINE L1 5453 5551 -1093 868 146 0 0 chrX 60909743 60909873 -116064267 + FLAM_A SINE Alu 13 142 0 198 0 0 0 chrX 60909897 60909919 -116064221 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 4201 181 35 26 chrX 60909921 60910651 -116063489 + L1MB5 LINE L1 5540 6262 -410 342 0 0 0 chrX 60910651 60910689 -116063451 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 369 0 0 0 chrX 60910688 60910729 -116063411 + (CA)n Simple_repeat Simple_repeat 2 42 0 4201 181 35 26 chrX 60910689 60911100 -116063040 + L1MB5 LINE L1 6262 6664 -8 211 338 0 0 chrX 60911200 60911277 -116062863 - MIR SINE MIR -13 249 173 195 321 0 18 chrX 60911273 60911329 -116062811 + L2 LINE L2 3217 3271 -1 * 333 263 12 0 chrX 60911346 60911426 -116062714 - MIR SINE MIR -70 138 58 322 289 61 35 chrX 60911583 60911697 -116062443 + MIR SINE MIR 20 136 -126 386 297 8 8 chrX 60911768 60911886 -116062254 - Charlie8 DNA MER1_type -2299 118 1 632 274 104 5 chrX 60911889 60912090 -116062050 + MIR SINE MIR 15 235 -27 701 182 0 73 chrX 60912223 60912388 -116061752 + MIR SINE MIR 109 261 -1 208 246 18 0 chrX 60915302 60915359 -116058781 + CT-rich Low_complexity Low_complexity 2 59 0 402 21 0 0 chrX 60915378 60915425 -116058715 + (CA)n Simple_repeat Simple_repeat 2 48 0 219 290 93 9 chrX 60915462 60915569 -116058571 - L3 LINE CR1 -39 1538 1423 424 340 103 17 chrX 60915631 60916073 -116058067 - L2 LINE L2 -188 3084 2608 246 307 25 110 chrX 60916683 60916846 -116057294 - L2 LINE L2 -252 3020 2872 * 473 332 55 31 chrX 60916843 60917132 -116057008 - L2 LINE L2 -686 2628 2333 645 210 99 6 chrX 60917273 60917435 -116056705 + MER58A DNA MER1_type 1 177 -47 6431 192 18 27 chrX 60917451 60918883 -116055257 - L1MC1 LINE L1 0 6333 4889 1947 115 0 0 chrX 60918883 60919136 -116055004 + AluSx SINE Alu 29 281 -31 321 26 0 0 chrX 60919139 60919177 -116054963 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 6431 192 18 27 chrX 60919177 60920671 -116053469 - L1MC1 LINE L1 -1446 4887 3437 22 0 0 0 chrX 60920672 60920694 -116053446 + AT_rich Low_complexity Low_complexity 1 22 0 3001 126 0 41 chrX 60920708 60921200 -116052940 - L1PB3 LINE L1 -7 6147 5676 188 83 0 28 chrX 60921202 60921238 -116052902 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 2642 73 0 4 chrX 60921238 60921743 -116052397 - L1PA4 LINE L1 -24 6131 5508 * 7454 232 69 25 chrX 60921724 60923601 -116050539 - L1 LINE L1 -1606 4540 2747 2473 62 0 16 chrX 60923601 60923908 -116050232 - AluY SINE Alu -9 302 1 7454 232 69 25 chrX 60923908 60924248 -116049892 - L1 LINE L1 -3399 2747 2423 1457 95 0 0 chrX 60924248 60924427 -116049713 - AluSc SINE Alu -20 289 111 7454 232 69 25 chrX 60924427 60924936 -116049204 - L1 LINE L1 -3723 2423 1704 1229 195 73 0 chrX 60924922 60925266 -116048874 - L1PBa LINE L1 -4578 2285 1917 * 425 319 129 0 chrX 60925418 60925650 -116048490 - L1M4 LINE L1 -524 5650 5389 2256 101 0 23 chrX 60925657 60925964 -116048176 - AluSx SINE Alu -12 300 1 234 128 0 0 chrX 60925968 60926007 -116048133 + (T)n Simple_repeat Simple_repeat 1 39 0 5668 123 16 2 chrX 60926229 60926584 -116047556 - L1PB1 LINE L1 -1 6150 5801 189 74 0 0 chrX 60926584 60926611 -116047529 + (TA)n Simple_repeat Simple_repeat 1 27 0 5668 123 16 2 chrX 60926611 60927355 -116046785 - L1PB1 LINE L1 -350 5801 5034 297 0 0 0 chrX 60927805 60927838 -116046302 + (TG)n Simple_repeat Simple_repeat 2 34 0 1834 150 14 0 chrX 60927838 60928118 -116046022 - AluSx SINE Alu -28 284 1 5670 33 1 0 chrX 60928184 60928854 -116045286 - L1PA4 LINE L1 -6 6149 5479 5332 15 0 0 chrX 60929681 60930285 -116043855 - L1PA3 LINE L1 0 6155 5552 3681 223 20 30 chrX 60930618 60931771 -116042369 - L1 LINE L1 -3101 3045 1903 1667 163 67 22 chrX 60931772 60932129 -116042011 - THE1C LTR MaLR -1 374 2 3873 26 0 2 chrX 60932158 60932654 -116041486 - L1PA3 LINE L1 -801 5345 4851 7175 16 0 0 chrX 60932654 60933466 -116040674 + L1PA3 LINE L1 5337 6155 0 733 171 14 0 chrX 60933476 60933616 -116040524 - THE1C-int LTR MaLR -19 1632 1491 * 3148 154 12 63 chrX 60933608 60934269 -116039871 - THE1C-int LTR MaLR -945 635 9 1745 157 58 28 chrX 60934277 60934641 -116039499 - THE1C LTR MaLR 0 375 1 13899 146 27 16 chrX 60934641 60937170 -116036970 - L1PBa LINE L1 -4303 2560 3 5524 241 37 17 chrX 60937182 60939921 -116034219 - L1PBa LINE L1 -4937 1926 80 682 218 35 30 chrX 60939943 60940145 -116033995 - L1PBa LINE L1 -5704 1159 957 417 144 133 18 chrX 60940172 60940308 -116033832 - L1MB7 LINE L1 -348 5830 5668 2276 120 0 7 chrX 60940308 60940616 -116033524 - AluSx SINE Alu -6 306 1 11773 90 3 2 chrX 60941536 60944009 -116030131 + L1PA7 LINE L1 3660 6143 -11 23 0 0 0 chrX 60944009 60944032 -116030108 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 60944270 60944300 -116029840 + AT_rich Low_complexity Low_complexity 1 30 0 3241 169 49 88 chrX 60945273 60947011 -116027129 - L1MA9 LINE L1 -199 7134 5472 29 0 0 0 chrX 60947011 60947040 -116027100 + AT_rich Low_complexity Low_complexity 1 29 0 27759 38 17 1 chrX 60947041 60953060 -116021080 - L1PA2 LINE L1 -2 6153 1 241 65 0 43 chrX 60953119 60953165 -116020975 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 38683 51 21 2 chrX 60953165 60959185 -116014955 - L1PA3 LINE L1 -13 6142 1 703 244 37 26 chrX 60959239 60959510 -116014630 - L1MA9 LINE L1 -3697 3470 3197 704 247 21 25 chrX 60959529 60959768 -116014372 - L1MA9 LINE L1 -5070 2098 1861 604 305 55 21 chrX 60959939 60960371 -116013769 - L1MA9 LINE L1 -5852 1246 3 1229 234 7 10 chrX 60960376 60960983 -116013157 - L1MCa LINE L1 -3576 2850 2244 301 233 14 0 chrX 60960986 60961059 -116013081 - L1MCa LINE L1 -6322 104 31 2063 79 0 15 chrX 60961349 60961615 -116012525 + AluY SINE Alu 41 302 -9 363 179 39 39 chrX 60962843 60962921 -116011219 + L2 LINE L2 3236 3313 0 349 267 0 0 chrX 60963090 60963165 -116010975 - MER68 LTR ERV1 0 562 488 23 33 0 0 chrX 60963165 60963195 -116010945 + AT_rich Low_complexity Low_complexity 1 30 0 231 188 0 0 chrX 60963211 60963259 -116010881 + (TA)n Simple_repeat Simple_repeat 1 48 0 14323 166 88 43 chrX 60963259 60963859 -116010281 - L1MA1 LINE L1 -27 7694 7123 7192 53 26 0 chrX 60963859 60964733 -116009407 + MER11D LTR ERVK 1 897 0 14323 166 88 43 chrX 60964733 60968600 -116005540 - L1MA1 LINE L1 -598 7123 3432 181 0 69 0 chrX 60968600 60968629 -116005511 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2191 28 0 0 chrX 60968629 60968884 -116005256 - L1PA2 LINE L1 -18 6137 5883 14323 166 88 43 chrX 60968884 60971747 -116002393 - L1MA1 LINE L1 -4288 3433 25 1559 249 35 29 chrX 60971749 60972235 -116001905 - MER68 LTR ERV1 -65 497 9 850 126 8 137 chrX 60973136 60973391 -116000749 + L1MB8 LINE L1 5952 6173 -5 1641 181 31 3 chrX 60973400 60973753 -116000387 - L1MC/D LINE L1 -2192 5616 5254 204 125 0 0 chrX 60974369 60974401 -115999739 + (TTA)n Simple_repeat Simple_repeat 2 33 0 488 186 0 0 chrX 60974438 60974535 -115999605 + L1ME1 LINE L1 5575 5671 -571 2312 102 0 13 chrX 60977482 60977797 -115996343 - AluY SINE Alu 0 311 1 23 33 0 0 chrX 60977999 60978029 -115996111 + AT_rich Low_complexity Low_complexity 1 30 0 39240 44 28 1 chrX 60978410 60984394 -115989746 + L1PA3 LINE L1 8 6151 -4 644 181 31 0 chrX 60984535 60984662 -115989478 - MER20 DNA MER1_type -1 218 88 1771 211 23 12 chrX 60984972 60985399 -115988741 + MLT1C LTR MaLR 36 467 0 180 0 0 0 chrX 60986003 60986023 -115988117 + (A)n Simple_repeat Simple_repeat 1 20 0 1450 273 17 8 chrX 60987194 60987663 -115986477 + L1ME1 LINE L1 5644 6116 -50 30 45 0 0 chrX 60987680 60987724 -115986416 + AT_rich Low_complexity Low_complexity 1 44 0 254 217 0 0 chrX 60988343 60988389 -115985751 - MIR SINE MIR 0 262 217 39545 59 5 0 chrX 60988390 60994502 -115979638 - L1PA4 LINE L1 -4 6151 12 521 333 67 9 chrX 60994505 60994715 -115979425 - MIR SINE MIR -38 224 3 1023 232 9 0 chrX 60995199 60995410 -115978730 + MER58A DNA MER1_type 12 224 0 297 135 0 0 chrX 60995648 60995700 -115978440 + (TG)n Simple_repeat Simple_repeat 2 53 0 363 178 0 0 chrX 60997066 60997139 -115977001 - L1MB1 LINE L1 -24 6144 6072 221 316 43 43 chrX 60997230 60997369 -115976771 + MIR3 SINE MIR 67 205 -3 459 227 244 0 chrX 60997613 60997785 -115976355 + MIR SINE MIR 23 236 -26 227 291 0 0 chrX 60998066 60998121 -115976019 + L2 LINE L2 3246 3300 -13 300 216 34 34 chrX 60998121 60998209 -115975931 + L1MC4 LINE L1 6616 6703 -1339 201 83 0 62 chrX 60998211 60998259 -115975881 + (TA)n Simple_repeat Simple_repeat 2 46 0 190 345 0 0 chrX 60998389 60998447 -115975693 - L2 LINE L2 -680 2634 2577 318 371 11 34 chrX 61000726 61000904 -115973236 - L2 LINE L2 -181 3091 2918 416 329 86 7 chrX 61001610 61001762 -115972378 + MIR3 SINE MIR 20 183 -25 1666 123 8 0 chrX 61002284 61002536 -115971604 + L1MA7 LINE L1 5803 6056 -235 202 273 109 88 chrX 61003398 61003636 -115970504 + L2 LINE L2 2919 3161 -152 7980 74 14 0 chrX 61004331 61006149 -115967991 - L1PA7 LINE L1 -23 6131 4292 9798 123 8 8 chrX 61006151 61007691 -115966449 + L1P LINE L1 2617 4156 -1990 731 149 0 0 chrX 61007950 61008057 -115966083 + FLAM_C SINE Alu 1 107 -36 305 61 0 41 chrX 61008072 61008121 -115966019 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 1868 99 38 0 chrX 61008132 61008395 -115965745 + AluSq SINE Alu 1 273 -40 4411 260 41 34 chrX 61008496 61010073 -115964067 + L1PA13 LINE L1 378 1942 -4855 2230 165 37 0 chrX 61010073 61010424 -115963716 - THE1B LTR MaLR 0 364 1 11270 113 21 3 chrX 61010424 61011976 -115962164 - THE1B-int LTR MaLR 0 1580 1 2319 167 28 3 chrX 61011978 61012331 -115961809 - THE1B LTR MaLR -2 362 1 4411 260 41 34 chrX 61012331 61012663 -115961477 + L1PA13 LINE L1 1942 2270 -4527 1746 133 23 0 chrX 61012663 61012919 -115961221 + AluSx SINE Alu 35 296 -16 1694 61 0 0 chrX 61012919 61013148 -115960992 + L1PA5 LINE L1 5939 6167 0 2252 111 0 0 chrX 61013149 61013446 -115960694 + AluSg SINE Alu 1 297 -13 4411 260 41 34 chrX 61013446 61014323 -115959817 + L1PA13 LINE L1 2269 3694 -3103 1812 166 82 56 chrX 61014423 61015035 -115959105 - HERVH LTR ERV1 -6765 948 1 1568 169 80 78 chrX 61015035 61015484 -115958656 - LTR7 LTR ERV1 0 450 1 1534 224 91 17 chrX 61015485 61016835 -115957305 - L1PBa LINE L1 -5230 1633 23 2110 192 57 10 chrX 61016854 61017255 -115956885 - MSTA LTR MaLR -8 420 1 813 126 35 0 chrX 61017960 61018103 -115956037 - L1MA2 LINE L1 -107 6197 6050 1537 259 57 4 chrX 61018545 61019075 -115955065 + L1M4 LINE L1 4298 4855 -1291 7127 84 9 0 chrX 61019075 61020371 -115953769 - L1PA8 LINE L1 -7 6165 4866 3194 108 53 19 chrX 61020371 61020845 -115953295 - LTR2B LTR ERV1 0 490 1 16571 91 5 23 chrX 61020845 61023143 -115950997 - Harlequin LTR ERV1 0 6896 4639 2030 231 7 14 chrX 61023259 61023674 -115950466 + L1PA12 LINE L1 610 1021 -6560 7840 35 0 0 chrX 61023675 61024804 -115949336 - L1PA3 LINE L1 0 6155 5027 10017 33 7 0 chrX 61024804 61025989 -115948151 + L1PA3 LINE L1 3815 5007 -1139 3794 257 18 17 chrX 61025987 61027659 -115946481 + L1PA12 LINE L1 1006 3471 -4113 * 10562 191 18 9 chrX 61027682 61029095 -115945045 + L1P LINE L1 4648 6089 -1495 1951 147 3 0 chrX 61029095 61029388 -115944752 + AluSq SINE Alu 5 298 -15 10562 191 18 9 chrX 61029388 61030092 -115944048 + L1P LINE L1 6089 6785 -799 4897 64 22 2 chrX 61030092 61031103 -115943037 + MER11A LTR ERVK 1 1266 0 6030 231 69 8 chrX 61031107 61031245 -115942895 - L1 LINE L1 -1594 5268 5140 183 42 0 0 chrX 61031245 61031269 -115942871 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 6030 231 69 8 chrX 61031269 61032833 -115941307 - L1 LINE L1 -1722 5140 3462 27 0 0 0 chrX 61032838 61032865 -115941275 + AT_rich Low_complexity Low_complexity 1 27 0 7555 39 2 0 chrX 61032868 61033764 -115940376 - L1PA4 LINE L1 -4 6151 5254 1876 51 0 0 chrX 61033770 61034007 -115940133 + L1PA4 LINE L1 5014 5250 -896 * 2947 168 132 2 chrX 61034003 61036191 -115937949 - L1PBa LINE L1 -3385 3477 815 1722 77 9 5 chrX 61036296 61036518 -115937622 + L1P LINE L1 4058 4280 -1866 1806 186 18 13 chrX 61036529 61036983 -115937157 + L1MD1 LINE L1 5167 5621 -621 43098 59 3 1 chrX 61036983 61043120 -115931020 + L1PA4 LINE L1 1 6151 -4 2862 183 49 23 chrX 61043118 61043735 -115930405 + L1MD1 LINE L1 5609 6241 -1 * 240 234 21 0 chrX 61043944 61043991 -115930149 + Tigger5 DNA MER2_type 1 48 -2275 264 271 0 0 chrX 61043991 61044061 -115930079 - Tigger5 DNA MER2_type 0 2323 2254 2610 110 42 5 chrX 61044381 61044764 -115929376 - MSTA LTR MaLR 0 428 32 226 138 0 46 chrX 61046578 61046643 -115927497 + (TTTTG)n Simple_repeat Simple_repeat 4 65 0 14676 190 25 8 chrX 61046659 61049831 -115924309 - L1PB1 LINE L1 -2 6865 3578 2351 82 3 28 chrX 61049831 61050149 -115923991 - AluY SINE Alu -1 310 1 14676 190 25 8 chrX 61050149 61052130 -115922010 - L1PB1 LINE L1 -3289 3578 1631 1320 202 41 75 chrX 61052131 61052597 -115921543 - LTR7 LTR ERV1 0 450 1 28 61 0 0 chrX 61052605 61052654 -115921486 + AT_rich Low_complexity Low_complexity 1 49 0 5196 205 8 2 chrX 61052770 61053830 -115920310 - HERVH LTR ERV1 -159 7554 6489 2900 171 20 3 chrX 61053830 61054391 -115919749 - HERVH LTR ERV1 -2870 4115 3954 1155 123 5 0 chrX 61054422 61054609 -115919531 - HERVH LTR ERV1 -3720 3993 3806 * 5036 130 12 18 chrX 61054603 61055513 -115918627 - HERVH LTR ERV1 -4126 3587 2683 4978 121 34 24 chrX 61055614 61056794 -115917346 - HERVH LTR ERV1 -4304 2592 1401 3549 113 5 9 chrX 61056804 61057360 -115916780 - HERVH LTR ERV1 -6342 554 1 3044 126 31 17 chrX 61057360 61057843 -115916297 - LTR2B LTR ERV1 0 490 1 9731 180 25 114 chrX 61057875 61061129 -115913011 - L1P LINE L1 -3183 2963 2 2903 233 54 5 chrX 61061129 61062365 -115911775 + L1MD2 LINE L1 4845 6137 -222 22 0 0 0 chrX 61062376 61062398 -115911742 + AT_rich Low_complexity Low_complexity 1 22 0 593 299 4 11 chrX 61063421 61063611 -115910529 - MER5B DNA MER1_type 0 178 1 601 325 28 5 chrX 61064525 61064737 -115909403 + MIR SINE MIR 2 218 -44 802 285 78 8 chrX 61065045 61065287 -115908853 + MIR SINE MIR 2 260 -2 187 400 29 9 chrX 61065578 61065683 -115908457 - L2 LINE L2 -27 3286 3180 2937 151 16 25 chrX 61066505 61067391 -115906749 + L1PA16 LINE L1 5328 6160 -6 571 170 0 0 chrX 61067508 61067620 -115906520 - L1MA4 LINE L1 -14 6286 6175 4654 159 27 4 chrX 61067669 61068527 -115905613 - L1PA16 LINE L1 -105 6061 5165 603 0 0 0 chrX 61068527 61068594 -115905546 + (TTTC)n Simple_repeat Simple_repeat 2 68 0 4654 159 27 4 chrX 61068594 61068906 -115905234 - L1PA16 LINE L1 -1001 5165 4862 821 231 143 26 chrX 61068909 61069293 -115904847 + LTR36 LTR ERV1 145 611 0 1728 201 46 1 chrX 61069293 61070004 -115904136 - L1M2 LINE L1 -681 5619 4883 1663 174 13 3 chrX 61070040 61070357 -115903783 - L1PA16 LINE L1 -13 6856 6537 4371 208 48 13 chrX 61070358 61072068 -115902072 - L1PA16 LINE L1 -477 6392 4621 7117 243 65 64 chrX 61072075 61073037 -115901103 - L1PA16 LINE L1 -3546 3303 2343 2005 134 41 9 chrX 61073037 61073381 -115900759 - THE1A LTR MaLR 0 355 1 7117 243 65 64 chrX 61073381 61075690 -115898450 - L1PA16 LINE L1 -4506 2343 1 372 193 82 23 chrX 61077346 61077517 -115896623 - L1M4 LINE L1 -1612 4534 4354 * 477 266 7 13 chrX 61077498 61077652 -115896488 - L1MD2 LINE L1 -13 6346 6194 189 74 0 0 chrX 61077655 61077682 -115896458 + (TG)n Simple_repeat Simple_repeat 2 28 0 2120 174 24 13 chrX 61077710 61078164 -115895976 - L1MA10 LINE L1 -1 6333 5875 512 155 0 0 chrX 61078169 61078266 -115895874 - L1MDa LINE L1 -4143 2397 2301 577 196 18 89 chrX 61078353 61078535 -115895605 - L1MA4 LINE L1 -6 6294 6129 1453 223 11 7 chrX 61078535 61078818 -115895322 + AluJo SINE Alu 5 288 -24 577 196 18 89 chrX 61078818 61078860 -115895280 - L1MA4 LINE L1 -171 6129 6086 312 133 0 0 chrX 61078868 61078928 -115895212 - L1MDa LINE L1 -4816 1724 1665 851 187 5 35 chrX 61078945 61079148 -115894992 - L1MA7 LINE L1 -2 6289 6093 * 3048 22 3 0 chrX 61079146 61079503 -115894637 - L1PA4 LINE L1 -3 6152 5795 810 210 25 5 chrX 61079509 61079709 -115894431 - L1MA5 LINE L1 -193 6107 5904 462 199 7 7 chrX 61079779 61079915 -115894225 - L1MDa LINE L1 -5298 1242 1107 263 203 0 0 chrX 61081032 61081091 -115893049 - L1MDa LINE L1 -5416 1124 1066 2442 82 3 0 chrX 61081228 61081557 -115892583 - L1PA7 LINE L1 0 6154 5825 823 371 30 22 chrX 61081602 61082179 -115891961 + L1PA13 LINE L1 788 1368 -6206 275 213 13 13 chrX 61082358 61082433 -115891707 + L1PA13 LINE L1 2108 2182 -5399 1050 325 17 14 chrX 61082665 61083244 -115890896 + L1PA13 LINE L1 2182 2762 -4819 3265 191 65 38 chrX 61083279 61084104 -115890036 + L1MEc LINE L1 2057 2871 -3344 2218 131 0 0 chrX 61084104 61084401 -115889739 - AluSx SINE Alu -15 297 1 3265 191 65 38 chrX 61084401 61084642 -115889498 + L1MEc LINE L1 2871 3104 -3111 1369 213 31 1 chrX 61084692 61085063 -115889077 + L1PA13 LINE L1 2756 3159 -4425 * 4159 40 0 0 chrX 61085062 61085591 -115888549 - L1P LINE L1 -1069 5077 4549 7836 14 1 0 chrX 61085594 61086624 -115887516 + L1PA2 LINE L1 5122 6153 -2 754 163 0 0 chrX 61086692 61086821 -115887319 + L1PA13 LINE L1 3145 3273 -4311 246 128 0 0 chrX 61087481 61087520 -115886620 + (GA)n Simple_repeat Simple_repeat 2 40 0 586 180 259 0 chrX 61087563 61087702 -115886438 + L1PA13 LINE L1 5119 5293 -2291 447 184 0 70 chrX 61087725 61087839 -115886301 + L1PA13 LINE L1 6117 6222 -1362 368 140 0 0 chrX 61087836 61087893 -115886247 - L1MB3 LINE L1 -194 5989 5933 * 974 209 29 138 chrX 61087912 61088324 -115885816 - MLT1B LTR MaLR -19 371 5 2714 185 36 30 chrX 61088328 61088461 -115885679 - L1MB3 LINE L1 -246 5937 5806 354 23 0 0 chrX 61088461 61088504 -115885636 + (TG)n Simple_repeat Simple_repeat 2 44 0 2714 185 36 30 chrX 61088504 61089028 -115885112 - L1MB3 LINE L1 -377 5806 5276 19479 64 1 1 chrX 61089117 61095123 -115879017 - L1PA4 LINE L1 0 6155 6 1776 194 12 3 chrX 61095125 61095455 -115878685 + MLT1A1 LTR MaLR 33 365 0 3114 151 20 2 chrX 61095534 61096092 -115878048 - L1PA16 LINE L1 -26 6140 5573 3024 233 77 12 chrX 61096091 61097205 -115876935 - L1MB3 LINE L1 -944 5202 4016 * 4187 206 31 2 chrX 61097203 61098234 -115875906 - L1MC2 LINE L1 -112 6232 5162 372 274 20 0 chrX 61098234 61098380 -115875760 + L1M4 LINE L1 2942 3090 -3056 1177 336 8 0 chrX 61098381 61098759 -115875381 + L1PA5 LINE L1 1 381 -6406 23581 51 2 0 chrX 61098760 61102534 -115871606 - L1PA4 LINE L1 -2 6153 2365 18201 125 14 2 chrX 61102636 61105485 -115868655 + L1PA7 LINE L1 1867 4750 -1396 11169 125 16 7 chrX 61105486 61107153 -115866987 + L1PA5 LINE L1 653 2335 -4462 2770 98 2 4 chrX 61107145 61107517 -115866623 + L1PA5 LINE L1 2544 2915 -3882 * 12209 81 5 2 chrX 61107517 61109877 -115864263 + L1PA5 LINE L1 4451 6817 0 6870 82 13 0 chrX 61109877 61111263 -115862877 + L1PA7 LINE L1 4743 6139 -15 249 57 0 0 chrX 61111263 61111298 -115862842 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2770 98 2 4 chrX 61111298 61111327 -115862813 + L1PA5 LINE L1 2912 2945 -3852 2387 220 41 0 chrX 61111528 61112070 -115862070 + L1PBa LINE L1 1 564 -6299 11482 134 31 45 chrX 61112181 61114954 -115859186 - L1P3 LINE L1 -3625 2836 2 1102 138 6 0 chrX 61114979 61115138 -115859002 - MLT2A1 LTR ERVL -83 361 202 1168 265 73 35 chrX 61115179 61115724 -115858416 - L1MCa LINE L1 -3366 3060 2481 3185 177 32 17 chrX 61115724 61116313 -115857827 - MER7C DNA MER2_type -4 598 1 1168 265 73 35 chrX 61116313 61116466 -115857674 - L1MCa LINE L1 -3945 2481 2335 5010 184 170 72 chrX 61116472 61118186 -115855954 - L1PA13 LINE L1 -4 6159 4613 2428 170 49 7 chrX 61118186 61118597 -115855543 - MSTA LTR MaLR 0 428 1 8034 188 34 20 chrX 61118597 61120153 -115853987 - MSTA-int LTR MaLR 0 1580 3 1124 133 0 6 chrX 61120155 61120321 -115853819 - MSTA LTR MaLR 0 428 264 5010 184 170 72 chrX 61120321 61120953 -115853187 - L1PA13 LINE L1 -1550 4613 3386 4033 61 16 4 chrX 61121053 61121546 -115852594 + L1PA8 LINE L1 5674 6172 0 2809 261 53 60 chrX 61121566 61122158 -115851982 + L1MDa LINE L1 2384 2979 -3561 285 138 44 5 chrX 61122158 61122225 -115851915 - MADE1 DNA Mariner -34 46 1 2809 261 53 60 chrX 61122225 61122789 -115851351 + L1MDa LINE L1 2979 3593 -2947 1450 205 0 36 chrX 61122789 61123091 -115851049 + AluJb SINE Alu 3 293 -19 2809 261 53 60 chrX 61123091 61123533 -115850607 + L1MDa LINE L1 3593 4037 -2503 1142 223 77 17 chrX 61123538 61123725 -115850415 - MSTB1 LTR MaLR -13 419 206 204 67 0 0 chrX 61123725 61123755 -115850385 + (CAGA)n Simple_repeat Simple_repeat 2 31 0 1142 223 77 17 chrX 61123755 61123867 -115850273 - MSTB1 LTR MaLR -226 206 102 1126 155 14 39 chrX 61123974 61124181 -115849959 + THE1B LTR MaLR 163 364 0 9678 115 3 0 chrX 61124182 61125516 -115848624 + THE1B-int LTR MaLR 2 1339 -241 884 135 0 0 chrX 61125512 61125645 -115848495 + THE1B-int LTR MaLR 1448 1580 0 * 2261 138 48 20 chrX 61125645 61125999 -115848141 + THE1B LTR MaLR 1 364 0 632 269 57 0 chrX 61126002 61126214 -115847926 + L1MDa LINE L1 4254 4477 -2063 2287 313 24 27 chrX 61126224 61127028 -115847112 + L1PA13 LINE L1 1 801 -5986 310 209 66 11 chrX 61127064 61127155 -115846985 + L1PA15 LINE L1 6070 6165 0 1711 259 53 14 chrX 61127159 61127745 -115846395 + L1MDa LINE L1 4471 5079 -1461 5594 128 6 20 chrX 61127955 61128726 -115845414 - L1PB2 LINE L1 -1 6150 5370 189 0 0 0 chrX 61128726 61128747 -115845393 + (TTA)n Simple_repeat Simple_repeat 1 21 0 2369 23 15 0 chrX 61128748 61129013 -115845127 - L1PA4 LINE L1 -18 6137 5869 5594 128 6 20 chrX 61129013 61129211 -115844929 - L1PB2 LINE L1 -780 5371 5190 6906 221 9 14 chrX 61129321 61130973 -115843167 + L1 LINE L1 3345 4988 -1158 11205 117 20 9 chrX 61130973 61132671 -115841469 + L1P3 LINE L1 81 1776 -4675 13419 189 10 24 chrX 61132771 61136701 -115837439 - L1P3 LINE L1 -2512 3949 3 602 160 33 0 chrX 61136702 61136812 -115837328 + MSTB1 LTR MaLR 314 426 0 8090 206 18 10 chrX 61136906 61138771 -115835369 + L1PBa LINE L1 3 1644 -5219 4173 152 49 0 chrX 61138761 61138911 -115835229 + L1PA4 LINE L1 518 659 -5545 * 243 0 0 0 chrX 61138911 61138938 -115835202 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4173 152 49 0 chrX 61138938 61139951 -115834189 + L1PA4 LINE L1 659 1822 -4382 2315 153 31 70 chrX 61139951 61140468 -115833672 - MER11A LTR ERVK 0 1266 770 3195 162 84 17 chrX 61141192 61141786 -115832354 - MER67B LTR ERV1 -26 635 2 332 189 200 11 chrX 61142809 61142899 -115831241 - MIR SINE MIR -143 119 13 489 275 112 3 chrX 61144325 61144525 -115829615 + MIR SINE MIR 28 244 -18 274 271 103 93 chrX 61145833 61146135 -115828005 + L2 LINE L2 2968 3272 0 225 204 0 0 chrX 61146195 61146239 -115827901 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 30 0 0 chrX 61148678 61148711 -115825429 + (TTG)n Simple_repeat Simple_repeat 2 34 0 8758 237 67 50 chrX 61148712 61153104 -115821036 - L1PA12 LINE L1 -3080 4504 37 6178 167 32 29 chrX 61153105 61154319 -115819821 - L1M3f LINE L1 -4107 1221 4 299 204 0 0 chrX 61154336 61154385 -115819755 - Tigger7 DNA MER2_type -2219 268 220 394 233 12 61 chrX 61155861 61156024 -115818116 + CT-rich Low_complexity Low_complexity 2 156 0 306 73 0 0 chrX 61156339 61156380 -115817760 + (T)n Simple_repeat Simple_repeat 1 41 0 26596 83 6 9 chrX 61157407 61161024 -115813116 - L1P LINE L1 -2540 3606 1 15592 132 75 5 chrX 61161084 61161631 -115812509 + L1PA4 LINE L1 2443 2950 -3262 1542 226 126 11 chrX 61161631 61162012 -115812128 + MSTB LTR MaLR 2 426 0 15592 132 75 5 chrX 61162012 61164677 -115809463 + L1PA4 LINE L1 2950 5892 -320 21120 117 11 6 chrX 61164777 61167893 -115806247 - L1P LINE L1 -3012 3134 2 7519 111 11 1 chrX 61167894 61169009 -115805131 - L1P LINE L1 -1396 4750 3625 21 0 0 0 chrX 61173974 61173995 -115800145 + GC_rich Low_complexity Low_complexity 1 21 0 16227 36 1 0 chrX 61174172 61176406 -115797734 - L1P1 LINE L1 -466 5689 3455 2428 44 3 0 chrX 61176403 61176719 -115797421 + L1P LINE L1 3064 3380 -2766 * 934 130 43 27 chrX 61176717 61176901 -115797239 + L1M1 LINE L1 2949 3135 -4430 * 325 287 139 0 chrX 61177773 61177874 -115796266 + MIR SINE MIR 34 148 -60 334 256 26 26 chrX 61177921 61178038 -115796102 + MIR SINE MIR 19 135 -73 183 232 18 36 chrX 61179424 61179480 -115794660 + L2 LINE L2 3234 3288 -25 206 269 0 39 chrX 61180216 61180268 -115793872 + L2 LINE L2 3191 3240 -32 1704 282 90 42 chrX 61180277 61180358 -115793782 + L2 LINE L2 1271 1347 -1967 2378 119 72 17 chrX 61180358 61180703 -115793437 - THE1B LTR MaLR 0 364 1 1704 282 90 42 chrX 61180703 61181429 -115792711 + L2 LINE L2 1347 2117 -1197 184 309 124 10 chrX 61182671 61182768 -115791372 - L2 LINE L2 -1 3312 3205 8019 32 0 0 chrX 61183863 61184784 -115789356 - L1PA4 LINE L1 -3 6152 5231 1424 47 0 0 chrX 61184784 61184955 -115789185 + L1P LINE L1 4587 4757 -1389 * 10624 168 5 7 chrX 61184951 61186629 -115787511 + L1PA12 LINE L1 330 2004 -5577 7805 229 94 8 chrX 61186627 61187658 -115786482 + L1PA13 LINE L1 339 1280 -5517 * 342 0 0 0 chrX 61187658 61187696 -115786444 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 7805 229 94 8 chrX 61187696 61189583 -115784557 + L1PA13 LINE L1 1280 3529 -3268 6218 115 7 11 chrX 61189683 61189960 -115784180 + L1PA13 LINE L1 4887 5164 -1650 189 0 0 0 chrX 61189960 61189981 -115784159 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 6218 115 7 11 chrX 61189981 61191658 -115782482 + L1PA13 LINE L1 5164 6814 0 1484 210 0 3 chrX 61191658 61191950 -115782190 + L1MB8 LINE L1 5878 6176 -2 8176 157 47 115 chrX 61192329 61193751 -115780389 + L1M1 LINE L1 888 2149 -5416 757 43 22 0 chrX 61193751 61193843 -115780297 - L1PA4 LINE L1 -2 6153 6060 8176 157 47 115 chrX 61193843 61194338 -115779802 + L1M1 LINE L1 2149 2676 -4889 2112 251 40 16 chrX 61194439 61195112 -115779028 - L1PA13 LINE L1 -2890 3907 3219 7366 49 0 0 chrX 61195118 61195197 -115778943 - L1PA5 LINE L1 0 6154 6076 2343 92 0 0 chrX 61195197 61195491 -115778649 - AluY SINE Alu -17 294 1 7366 49 0 0 chrX 61195491 61196479 -115777661 - L1PA5 LINE L1 -77 6077 5122 4516 65 0 3 chrX 61196486 61197060 -115777080 - L1PA5 LINE L1 -1406 4740 4169 * 8218 63 2 0 chrX 61197058 61198108 -115776032 + L1PA5 LINE L1 3097 4148 -1998 5115 261 50 16 chrX 61198108 61200104 -115774036 - L1PA13 LINE L1 -3569 3228 1131 2624 96 20 14 chrX 61200104 61200457 -115773683 - THE1A LTR MaLR 0 355 1 10106 103 91 1 chrX 61200457 61201906 -115772234 - THE1A-int LTR MaLR 0 1580 1 2578 107 11 8 chrX 61201906 61202080 -115772060 - THE1A LTR MaLR 0 355 183 182 33 67 0 chrX 61202080 61202110 -115772030 + A-rich Low_complexity Low_complexity 4 35 0 2578 107 11 8 chrX 61202110 61202289 -115771851 - THE1A LTR MaLR -172 183 1 5474 228 27 14 chrX 61202292 61203409 -115770731 - L1PA13 LINE L1 -5655 1132 2 468 306 48 35 chrX 61203421 61203793 -115770347 - L1MDa LINE L1 -4148 2392 2016 5028 95 4 1 chrX 61203851 61204555 -115769585 - L1PA7 LINE L1 -3 6151 5446 10194 139 10 32 chrX 61204655 61207395 -115766745 - L1P3 LINE L1 -3557 2904 160 216 353 0 0 chrX 61207395 61207463 -115766677 + CT-rich Low_complexity Low_complexity 2 69 0 267 31 0 0 chrX 61207474 61207506 -115766634 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 51 0 0 chrX 61207512 61207551 -115766589 + MLT2C1 LTR ERVL 359 397 0 514 256 54 15 chrX 61207551 61207754 -115766386 + L1MEc LINE L1 1569 1779 -4617 302 295 67 75 chrX 61207914 61208287 -115765853 + L1MCb LINE L1 66 435 -5610 2321 113 3 0 chrX 61208386 61208695 -115765445 + AluSp SINE Alu 1 310 -3 388 334 45 75 chrX 61208711 61209019 -115765121 + L1MCb LINE L1 506 804 -5241 574 268 40 20 chrX 61209103 61209405 -115764735 + L1MCb LINE L1 777 1084 -4962 598 230 53 13 chrX 61209410 61209562 -115764578 + MER20 DNA MER1_type 1 158 -61 369 103 167 0 chrX 61209719 61209797 -115764343 + L1MA9 LINE L1 6184 6274 -38 463 303 36 0 chrX 61212848 61213069 -115761071 + L1MCb LINE L1 1196 1424 -5140 22 0 0 0 chrX 61213747 61213769 -115760371 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chrX 61213912 61213959 -115760181 + AT_rich Low_complexity Low_complexity 1 47 0 712 239 62 73 chrX 61215494 61215879 -115758261 + L1MCb LINE L1 1414 1794 -4770 1265 254 63 9 chrX 61215889 61216443 -115757697 + L1MCb LINE L1 3053 3636 -2928 * 3858 149 10 4 chrX 61216435 61217139 -115757001 + L1MA4 LINE L1 5356 6063 -237 640 198 0 0 chrX 61217145 61217251 -115756889 + FLAM_C SINE Alu 6 111 -32 703 184 13 0 chrX 61217308 61217460 -115756680 + L1MA4 LINE L1 6054 6207 -93 834 310 44 30 chrX 61217545 61218323 -115755817 - HERVI LTR ERV1 -4912 2048 951 594 307 4 9 chrX 61218497 61218722 -115755418 - HERVI LTR ERV1 -6776 1009 786 1984 214 5 30 chrX 61219003 61219405 -115754735 + L1PA12 LINE L1 592 983 -6598 7402 76 4 2 chrX 61219512 61220573 -115753567 - L1P LINE L1 -862 5284 4222 1174 168 102 108 chrX 61220573 61221026 -115753114 - LTR7 LTR ERV1 0 450 1 3129 139 16 9 chrX 61221026 61221579 -115752561 - HERVH LTR ERV1 0 7713 7157 * 10238 140 6 5 chrX 61221572 61223281 -115750859 - HERVH LTR ERV1 -1697 6016 4306 2474 158 11 4 chrX 61223282 61223756 -115750384 - HERVH LTR ERV1 -6435 1278 802 1422 181 113 36 chrX 61223817 61224181 -115749959 - HERVH LTR ERV1 -7254 459 68 21683 133 9 20 chrX 61224191 61227973 -115746167 - L1P LINE L1 -2392 3754 11 3679 214 14 78 chrX 61227993 61230543 -115743597 - L1MA4 LINE L1 -282 6200 3827 1288 153 0 0 chrX 61230564 61230747 -115743393 - AluSx SINE Alu -129 183 1 3200 213 31 1 chrX 61230751 61231649 -115742491 - L1MA4 LINE L1 -2591 3737 2813 5606 214 43 18 chrX 61231777 61233947 -115740193 - L1MA4 LINE L1 -3984 2344 228 2185 185 24 7 chrX 61233947 61234368 -115739772 + MSTA LTR MaLR 1 428 0 8626 174 25 22 chrX 61234368 61236014 -115738126 + MSTA-int LTR MaLR 1 1650 -1 2163 148 64 5 chrX 61236020 61236424 -115737716 + MSTA LTR MaLR 1 428 0 5606 214 43 18 chrX 61236424 61236531 -115737609 - L1MA4 LINE L1 -6104 224 1 865 217 66 37 chrX 61236561 61236833 -115737307 + L1MB7 LINE L1 5905 6184 0 300 225 0 0 chrX 61236830 61236901 -115737239 - L1MDb LINE L1 -5341 1068 998 * 954 171 46 0 chrX 61236909 61237084 -115737056 - MLT1C LTR MaLR 0 467 285 401 294 44 6 chrX 61237085 61237245 -115736895 - L1MDb LINE L1 -5548 861 696 1300 291 94 17 chrX 61237984 61238676 -115735464 + L1MEc LINE L1 32 776 -5620 952 316 31 41 chrX 61238685 61239175 -115734965 + L1M3d LINE L1 13 497 -5394 266 353 1 30 chrX 61239184 61239317 -115734823 + L1M3d LINE L1 315 691 -5200 903 266 78 20 chrX 61239353 61239890 -115734250 + L1MEc LINE L1 1002 1569 -4827 1144 225 55 17 chrX 61239896 61240278 -115733862 + MLT2D LTR ERVL 3 393 -71 17298 117 9 3 chrX 61240300 61243748 -115730392 - L1PA7 LINE L1 -5 6149 2684 2844 51 3 6 chrX 61243848 61244203 -115729937 + L1PA8 LINE L1 5806 6159 -13 21 0 0 0 chrX 61244274 61244295 -115729845 + AT_rich Low_complexity Low_complexity 1 21 0 2536 231 33 3 chrX 61244302 61244754 -115729386 + L1 LINE L1 3943 4427 -1719 196 53 53 0 chrX 61244754 61244792 -115729348 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2536 231 33 3 chrX 61244792 61245072 -115729068 + L1 LINE L1 4427 4697 -1449 4391 119 26 0 chrX 61245189 61245914 -115728226 - HERVH48 LTR ERV1 -3697 2957 2214 409 92 46 0 chrX 61245914 61245979 -115728161 - HERVH48 LTR ERV1 -2067 4587 4520 6180 112 42 19 chrX 61245994 61246999 -115727141 - HERVH48 LTR ERV1 -4441 2213 1186 5147 141 19 2 chrX 61246989 61247849 -115726291 - HERVH48 LTR ERV1 -5780 874 1 * 1755 125 0 0 chrX 61247849 61248105 -115726035 - MER48 LTR ERV1 0 387 132 1054 126 0 0 chrX 61248144 61248295 -115725845 - MER48 LTR ERV1 -235 152 2 256 272 87 11 chrX 61248347 61248439 -115725701 - L1PA15-16 LINE L1 -6576 274 176 2041 56 0 19 chrX 61248460 61248729 -115725411 + L1PA7 LINE L1 5891 6154 0 6020 26 0 0 chrX 61248732 61249529 -115724611 + L1PA3 LINE L1 5193 5989 -166 804 323 40 61 chrX 61249675 61250514 -115723626 - L1PBa LINE L1 -6611 970 149 2147 264 37 5 chrX 61250522 61251192 -115722948 - L1 LINE L1 -923 5223 4532 7513 33 1 0 chrX 61251194 61252339 -115721801 + L1PA3 LINE L1 5007 6152 -3 30 0 0 0 chrX 61252369 61252399 -115721741 + AT_rich Low_complexity Low_complexity 1 30 0 363 295 0 27 chrX 61252401 61252550 -115721590 - L1PA15-16 LINE L1 -6702 147 3 4804 205 44 10 chrX 61253124 61253194 -115720946 + L1MB1 LINE L1 4027 4093 -2075 387 0 0 0 chrX 61253194 61253240 -115720900 + L1PA4 LINE L1 6106 6153 -2 4804 205 44 10 chrX 61253240 61254370 -115719770 + L1MB1 LINE L1 4093 5327 -841 1700 47 5 0 chrX 61254370 61254582 -115719558 + L1PA3 LINE L1 5935 6169 0 199 0 0 0 chrX 61254582 61254604 -115719536 + (TAAA)n Simple_repeat Simple_repeat 2 172 0 4804 205 44 10 chrX 61254604 61255419 -115718721 + L1MB1 LINE L1 5327 6113 -55 4264 89 0 0 chrX 61255415 61256019 -115718121 - L1PA8 LINE L1 -206 5966 5363 * 4168 104 1 3 chrX 61256017 61256671 -115717469 + L1PA8 LINE L1 4705 5357 -789 * 240 171 0 0 chrX 61256670 61256711 -115717429 + L1MB1 LINE L1 6127 6167 -1 * 380 322 29 11 chrX 61256725 61256899 -115717241 + L1 LINE L1 3171 3347 -2799 266 241 11 23 chrX 61256901 61256988 -115717152 - L1M4 LINE L1 -2100 4046 3961 3110 147 23 3 chrX 61257006 61257572 -115716568 - L1MA4 LINE L1 -427 5873 5297 3257 113 19 6 chrX 61257593 61258105 -115716035 - L1PB1 LINE L1 0 6151 5633 324 0 0 0 chrX 61258137 61258173 -115715967 + (T)n Simple_repeat Simple_repeat 1 36 0 1000 308 31 36 chrX 61258573 61259139 -115715001 + L1PA12 LINE L1 1539 2080 -5501 736 215 9 17 chrX 61259125 61259360 -115714780 + L1 LINE L1 4243 4473 -1673 * 7216 45 3 2 chrX 61259367 61260725 -115713415 - L1PA4 LINE L1 0 6155 4795 8101 40 2 1 chrX 61260725 61261772 -115712368 + L1P LINE L1 3786 4833 -1313 3155 212 45 4 chrX 61261821 61262801 -115711339 + L1P4 LINE L1 4480 5489 -676 25691 57 2 1 chrX 61262809 61266239 -115707901 + L1P LINE L1 2 3433 -2713 23 68 0 0 chrX 61266674 61266718 -115707422 + AT_rich Low_complexity Low_complexity 1 44 0 1571 182 22 4 chrX 61267276 61267551 -115706589 - AluJo SINE Alu -32 280 1 28930 58 6 8 chrX 61268085 61271172 -115702968 - L1P LINE L1 -1221 4925 1849 11648 42 5 2 chrX 61271172 61273380 -115700760 + L1PA3 LINE L1 3942 6152 -3 28930 58 6 8 chrX 61273380 61274308 -115699832 - L1P LINE L1 -4297 1849 920 6878 63 2 0 chrX 61274308 61275438 -115698702 + L1PA4 LINE L1 5017 6149 -6 3303 219 17 23 chrX 61275503 61275778 -115698362 - L1PB4 LINE L1 -3 6153 5878 288 0 0 0 chrX 61275778 61275810 -115698330 + (TG)n Simple_repeat Simple_repeat 2 33 0 3303 219 17 23 chrX 61275810 61277210 -115696930 - L1PB4 LINE L1 -278 5878 4398 10221 148 6 3 chrX 61277218 61279771 -115694369 - L1PA10 LINE L1 -4 6164 3608 2027 148 5 24 chrX 61279775 61280147 -115693993 - L1PB1 LINE L1 -3 6148 5784 267 115 35 44 chrX 61280148 61280261 -115693879 + (TA)n Simple_repeat Simple_repeat 2 113 0 3093 169 19 19 chrX 61280270 61281423 -115692717 - L1PB1 LINE L1 -360 5791 4633 648 0 0 0 chrX 61281799 61281871 -115692269 + (TA)n Simple_repeat Simple_repeat 2 73 0 8572 86 9 3 chrX 61281871 61283604 -115690536 - L1PA7 LINE L1 -118 6036 4295 843 60 17 0 chrX 61283604 61283721 -115690419 - L1PA4 LINE L1 0 6155 6037 8572 86 9 3 chrX 61283721 61283946 -115690194 - L1PA7 LINE L1 -1859 4295 4073 1996 269 36 24 chrX 61284449 61284807 -115689333 - L1ME1 LINE L1 -19 6147 5795 945 240 40 59 chrX 61284807 61285178 -115688962 - MLT1A1 LTR MaLR 0 365 2 1996 269 36 24 chrX 61285178 61285653 -115688487 - L1ME1 LINE L1 -371 5795 5304 1124 227 70 13 chrX 61285704 61286091 -115688049 - L1ME1 LINE L1 -998 5148 4740 2454 51 0 0 chrX 61286091 61286403 -115687737 - LTR17 LTR ERV1 -468 312 1 2097 90 0 0 chrX 61286403 61286692 -115687448 - HERV17 LTR ERV1 0 8626 8338 27901 57 3 2 chrX 61286710 61290296 -115683844 - HERV17 LTR ERV1 -2607 6019 2430 8673 84 12 2 chrX 61290281 61291485 -115682655 - HERV17 LTR ERV1 -6612 2014 800 * 4972 85 0 17 chrX 61291663 61292359 -115681781 - HERV17 LTR ERV1 -7942 684 1 3248 113 46 4 chrX 61292373 61292869 -115681271 - LTR17 LTR ERV1 -7 773 257 295 233 19 0 chrX 61292871 61292974 -115681166 - L1ME1 LINE L1 -1422 4724 4620 857 236 59 20 chrX 61292975 61293331 -115680809 - L1ME1 LINE L1 -1595 4551 4182 1629 189 39 0 chrX 61293346 61293632 -115680508 - AluJb SINE Alu -15 297 1 6120 173 24 21 chrX 61293646 61294701 -115679439 - L1 LINE L1 -3090 4475 3410 204 40 0 0 chrX 61294701 61294726 -115679414 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6120 173 24 21 chrX 61294726 61295721 -115678419 - L1 LINE L1 -4155 3410 2419 1686 218 218 4 chrX 61295717 61296207 -115677933 - L1 LINE L1 -6176 1389 795 * 2633 82 3 0 chrX 61296207 61296562 -115677578 + MLT2A1 LTR ERVL 1 356 -88 324 0 0 0 chrX 61296565 61296601 -115677539 + (TA)n Simple_repeat Simple_repeat 2 37 0 238 111 0 0 chrX 61296605 61296641 -115677499 + MLT2A1 LTR ERVL 485 520 0 6648 80 9 0 chrX 61296641 61297544 -115676596 + HERVL-A1 LTR ERVL 1 911 -4743 1534 122 4 0 chrX 61297549 61297779 -115676361 + MLT2A1 LTR ERVL 100 330 -114 180 0 0 0 chrX 61297786 61297806 -115676334 + (TA)n Simple_repeat Simple_repeat 2 21 0 2956 248 16 34 chrX 61297844 61298641 -115675499 - L1 LINE L1 -6766 799 17 11905 186 21 41 chrX 61298645 61301214 -115672926 - L1M1 LINE L1 -4940 2625 108 1673 298 80 22 chrX 61301314 61301337 -115672803 - L1MEc LINE L1 -5288 1108 1088 2501 162 34 0 chrX 61301337 61301751 -115672389 - MSTA LTR MaLR 0 428 1 1673 298 80 22 chrX 61301751 61302732 -115671408 - L1MEc LINE L1 -5308 1088 46 2943 218 35 18 chrX 61302757 61303730 -115670410 - L1MB8 LINE L1 -2 6176 5188 353 206 0 94 chrX 61303857 61304027 -115670113 - L1MB8 LINE L1 -1024 5122 4969 1042 234 65 8 chrX 61304030 61304428 -115669712 - L1MB8 LINE L1 -1560 4586 4166 * 1614 242 10 31 chrX 61304425 61304756 -115669384 + L1 LINE L1 3594 3912 -2234 967 42 0 0 chrX 61304756 61304876 -115669264 + L1PA2 LINE L1 6036 6155 0 1614 242 10 31 chrX 61304876 61305053 -115669087 + L1 LINE L1 3912 4091 -2055 704 228 35 26 chrX 61305065 61305188 -115668952 + L1 LINE L1 4316 4443 -1703 1688 186 54 23 chrX 61305188 61305542 -115668598 + MLT1A1 LTR MaLR 1 365 0 704 228 35 26 chrX 61305542 61305650 -115668490 + L1 LINE L1 4443 4549 -1597 24 0 0 0 chrX 61305650 61305674 -115668466 + AT_rich Low_complexity Low_complexity 1 24 0 1954 81 8 0 chrX 61305790 61306050 -115668090 - L1P3 LINE L1 -393 5761 5500 3948 221 25 15 chrX 61306051 61307107 -115667033 - L1MB8 LINE L1 -2187 3959 2894 * 11827 221 30 36 chrX 61307106 61311006 -115663134 - L1P3 LINE L1 -2551 3910 22 532 248 61 4 chrX 61311012 61311242 -115662898 - L1 LINE L1 -2868 3994 3752 1058 209 8 8 chrX 61311250 61311503 -115662637 - L1 LINE L1 -3045 3817 3565 225 0 0 0 chrX 61311508 61311533 -115662607 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1660 202 86 0 chrX 61311537 61311873 -115662267 - MER57A LTR ERV1 -38 365 1 11959 206 22 11 chrX 61311962 61313214 -115660926 - L1PB1 LINE L1 -1 6866 5629 182 62 31 0 chrX 61313214 61313246 -115660894 + (TA)n Simple_repeat Simple_repeat 2 34 0 11959 206 22 11 chrX 61313246 61316016 -115658124 - L1PB1 LINE L1 -1238 5629 2799 15289 127 45 29 chrX 61316018 61318713 -115655427 - L1PB1 LINE L1 -4123 2740 3 989 284 71 0 chrX 61318734 61319044 -115655096 - L1 LINE L1 -3293 3569 3238 1451 103 0 22 chrX 61319085 61319308 -115654832 - L1PA13 LINE L1 -4 6159 5942 8835 52 1 0 chrX 61319308 61320441 -115653699 + L1P LINE L1 2578 3711 -2435 2782 259 13 23 chrX 61320439 61321434 -115652706 + L1PA15-16 LINE L1 2067 3051 -3798 * 1367 114 25 8 chrX 61321452 61321689 -115652451 - L1P4 LINE L1 -656 5512 5272 306 0 0 0 chrX 61321689 61321723 -115652417 + (TA)n Simple_repeat Simple_repeat 1 34 0 7311 47 0 0 chrX 61321724 61323330 -115650810 - L1PA5 LINE L1 -11 6143 4537 386 351 47 64 chrX 61323330 61324158 -115649982 - L1PBa LINE L1 -5707 1156 355 2311 87 27 137 chrX 61324182 61324629 -115649511 - MER48 LTR ERV1 0 398 1 2883 102 8 5 chrX 61324629 61325023 -115649117 - HERVH48 LTR ERV1 0 6654 6260 * 10303 135 13 3 chrX 61325021 61326832 -115647308 - HERVH48 LTR ERV1 -1395 5259 3397 22 0 0 0 chrX 61326936 61326958 -115647182 + AT_rich Low_complexity Low_complexity 1 22 0 1777 153 37 7 chrX 61326960 61327255 -115646885 - L1PA10 LINE L1 -66 6102 5799 * 2869 172 64 3 chrX 61327252 61328117 -115646023 - L1M1 LINE L1 -631 5674 4741 231 36 0 0 chrX 61328122 61328150 -115645990 + (AAGTG)n Simple_repeat Simple_repeat 5 32 0 229 426 0 0 chrX 61328166 61328335 -115645805 + L2 LINE L2 2361 2529 -785 4029 89 29 0 chrX 61328345 61328905 -115645235 - L1PA7 LINE L1 -4 6150 5575 14000 98 9 7 chrX 61328908 61330987 -115643153 - L1PA7 LINE L1 -959 5187 3105 4236 110 10 7 chrX 61331006 61331614 -115642526 + HSMAR1 DNA Mariner 1 610 -677 317 306 15 15 chrX 61331614 61331748 -115642392 - L2 LINE L2 -805 2509 2376 4751 104 6 12 chrX 61331761 61332431 -115641709 + HSMAR1 DNA Mariner 620 1285 -2 508 343 125 43 chrX 61332436 61333143 -115640997 + L2 LINE L2 2538 3310 -3 518 248 101 23 chrX 61333490 61333708 -115640432 - L1M4 LINE L1 -1560 4586 4352 * 28145 130 24 58 chrX 61333696 61337276 -115636864 - L1PA7 LINE L1 -3 6151 2899 1909 141 3 33 chrX 61337276 61337394 -115636746 + AluSq SINE Alu 1 121 -192 2916 6 0 0 chrX 61337394 61337708 -115636432 - AluYb8 SINE Alu -4 314 1 1909 141 3 33 chrX 61337708 61337946 -115636194 + AluSq SINE Alu 121 313 0 28145 130 24 58 chrX 61337946 61340749 -115633391 - L1PA7 LINE L1 -3255 2899 1 1865 210 38 8 chrX 61340750 61341221 -115632919 - L1M4 LINE L1 -1741 4405 3921 * 2602 235 23 16 chrX 61341218 61341919 -115632221 + L1MB1 LINE L1 4590 5295 -851 195 146 0 0 chrX 61341919 61341960 -115632180 + (TG)n Simple_repeat Simple_repeat 2 42 0 1461 191 24 74 chrX 61341961 61342338 -115631802 + L1MB1 LINE L1 5807 6164 -4 200 213 0 0 chrX 61342376 61342423 -115631717 + (TA)n Simple_repeat Simple_repeat 2 48 0 2967 144 15 6 chrX 61343088 61343622 -115630518 - L1MA3 LINE L1 0 7724 7186 1160 22 0 0 chrX 61343622 61343747 -115630393 - L1PA2 LINE L1 -2 6153 6019 654 13 0 0 chrX 61343747 61343823 -115630317 + L1PA3 LINE L1 5825 5900 -255 * 11974 210 35 6 chrX 61343821 61344889 -115629251 - L1MA3 LINE L1 -526 7198 6163 270 0 0 0 chrX 61344889 61344919 -115629221 + (TTG)n Simple_repeat Simple_repeat 1 30 0 11974 210 35 6 chrX 61344919 61347240 -115626900 - L1MA3 LINE L1 -1561 6163 3705 399 140 0 0 chrX 61347242 61347299 -115626841 - AluJ/FLAM SINE Alu -245 57 1 13442 180 24 14 chrX 61347300 61349703 -115624437 - L1MA3 LINE L1 -5133 2432 5 22 35 0 0 chrX 61349818 61349847 -115624293 + AT_rich Low_complexity Low_complexity 1 29 0 247 268 122 16 chrX 61349868 61349991 -115624149 + L1M4b LINE L1 1 136 -6723 * 444 184 35 35 chrX 61349962 61350076 -115624064 + L1MB8 LINE L1 6868 6981 -8 673 185 68 146 chrX 61350081 61350219 -115623921 + L1MB7 LINE L1 5678 5780 -404 1501 154 0 0 chrX 61350219 61350433 -115623707 + AluSx SINE Alu 5 218 -94 673 185 68 146 chrX 61350433 61350602 -115623538 + L1MB7 LINE L1 5780 5961 -223 2468 224 68 27 chrX 61350714 61351514 -115622626 + L1ME1 LINE L1 5260 6159 -7 511 265 101 68 chrX 61351589 61352027 -115622113 + L1MC4 LINE L1 7588 8039 -3 333 266 82 25 chrX 61352127 61352285 -115621855 + L1ME4a LINE L1 5380 5546 -575 483 299 52 8 chrX 61352289 61352423 -115621717 + L2 LINE L2 3174 3313 0 333 235 61 23 chrX 61352862 61352994 -115621146 + L1ME4a LINE L1 5967 6103 -18 371 340 66 17 chrX 61353115 61353356 -115620784 + L1M4 LINE L1 4399 4651 -1495 296 133 0 0 chrX 61353361 61353406 -115620734 + Alu SINE Alu 246 290 -12 25 0 0 0 chrX 61353538 61353563 -115620577 + AT_rich Low_complexity Low_complexity 1 25 0 221 0 35 0 chrX 61353867 61353896 -115620244 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1127 43 0 0 chrX 61353896 61354034 -115620106 - L1PA6 LINE L1 -16 6138 6001 21 0 0 0 chrX 61354044 61354065 -115620075 + AT_rich Low_complexity Low_complexity 1 21 0 213 154 0 0 chrX 61354158 61354197 -115619943 + T-rich Low_complexity Low_complexity 1 39 0 545 183 29 36 chrX 61354434 61354571 -115619569 + L1MA3 LINE L1 14 149 -7416 * 12554 164 47 16 chrX 61354547 61354593 -115619547 + L1MA3 LINE L1 1103 1146 -6578 1766 194 0 3 chrX 61354593 61354892 -115619248 + AluJb SINE Alu 1 298 -14 12554 164 47 16 chrX 61354892 61356809 -115617331 + L1MA3 LINE L1 1146 3001 -4723 8736 29 0 0 chrX 61356809 61358612 -115615528 - L1PA3 LINE L1 0 6155 4353 12554 164 47 16 chrX 61358612 61358752 -115615388 + L1MA3 LINE L1 3001 3135 -4589 2660 90 28 18 chrX 61358752 61359152 -115614988 - L1PA8 LINE L1 -7 6165 5762 12554 164 47 16 chrX 61359152 61360893 -115613247 + L1MA3 LINE L1 3135 4820 -2904 1843 128 11 7 chrX 61360893 61361214 -115612926 - AluSx SINE Alu 0 323 2 12554 164 47 16 chrX 61361214 61363839 -115610301 + L1MA3 LINE L1 4820 7724 0 1357 249 55 25 chrX 61363950 61364419 -115609721 + L1MD2 LINE L1 1127 1580 -5064 2585 160 2 12 chrX 61364419 61364918 -115609222 + L1MA4 LINE L1 5806 6299 -1 1357 249 55 25 chrX 61364918 61365373 -115608767 + L1MD2 LINE L1 1580 3959 -2685 1457 195 3 27 chrX 61365378 61365551 -115608589 + L1MB7 LINE L1 5844 6007 -177 2197 166 25 44 chrX 61365551 61365985 -115608155 + MSTB LTR MaLR 1 426 0 1457 195 3 27 chrX 61365985 61366144 -115607996 + L1MB7 LINE L1 6007 6168 -16 3350 206 50 29 chrX 61366147 61366600 -115607540 + L1MD2 LINE L1 5937 6379 -478 2085 106 89 14 chrX 61366600 61366949 -115607191 + THE1C LTR MaLR 1 375 0 3350 206 50 29 chrX 61366949 61367382 -115606758 + L1MD2 LINE L1 6379 6841 -16 21 0 0 0 chrX 61367472 61367493 -115606647 + AT_rich Low_complexity Low_complexity 1 21 0 295 288 35 29 chrX 61367517 61367687 -115606453 + L1MC/D LINE L1 5318 5488 -2320 307 306 165 44 chrX 61367755 61367961 -115606179 + L1MC/D LINE L1 5573 5803 -439 873 199 76 0 chrX 61368406 61368577 -115605563 + MIR SINE MIR 72 255 -7 348 340 39 24 chrX 61369387 61369593 -115604547 - L1ME LINE L1 -660 5510 5302 3233 207 36 23 chrX 61369890 61370909 -115603231 + L1PB3 LINE L1 3980 5113 -1033 16739 189 29 27 chrX 61370916 61373495 -115600645 + L1PA11 LINE L1 10 2584 -3905 16739 153 32 11 chrX 61373495 61374801 -115599339 + L1PA11 LINE L1 2569 3846 -2643 4187 126 103 15 chrX 61374801 61375518 -115598622 + LTR17 LTR ERV1 1 780 0 16739 153 32 11 chrX 61375518 61376357 -115597783 + L1PA11 LINE L1 3846 4666 -1823 1802 130 17 17 chrX 61376357 61376650 -115597490 + AluSg1 SINE Alu 14 306 -3 16739 153 32 11 chrX 61376650 61378393 -115595747 + L1PA11 LINE L1 4666 6489 0 16739 189 29 27 chrX 61378393 61378410 -115595730 + L1PA11 LINE L1 2584 6489 0 5412 116 15 33 chrX 61378405 61379472 -115594668 + L1PB3 LINE L1 5100 6149 -5 * 2188 77 0 3 chrX 61379753 61380070 -115594070 - AluY SINE Alu 0 316 1 763 234 104 75 chrX 61380273 61380323 -115593817 - L1MC4a LINE L1 -1877 5931 5884 2230 104 3 19 chrX 61380323 61380640 -115593500 - AluSp SINE Alu 0 313 2 763 234 104 75 chrX 61380640 61381042 -115593098 - L1MC4a LINE L1 -1924 5884 5466 427 294 43 52 chrX 61381280 61381336 -115592804 - MIR SINE MIR -2 260 205 342 0 0 0 chrX 61381336 61381374 -115592766 + (CA)n Simple_repeat Simple_repeat 2 39 0 427 294 43 52 chrX 61381374 61381548 -115592592 - MIR SINE MIR -57 205 32 455 296 63 6 chrX 61381877 61382036 -115592104 - MIR SINE MIR 0 262 95 188 378 92 0 chrX 61382063 61382161 -115591979 + MIR SINE MIR 33 139 -69 411 321 0 0 chrX 61382946 61383058 -115591082 + MIR SINE MIR 21 132 -76 542 332 37 52 chrX 61383270 61383553 -115590587 + L3 LINE CR1 987 1264 -313 2386 133 32 65 chrX 61383553 61383996 -115590144 - MSTC LTR MaLR 0 428 1 542 332 37 52 chrX 61383996 61384113 -115590027 + L3 LINE CR1 1264 1381 -196 611 213 88 15 chrX 61385216 61385515 -115588625 - MLT1A1 LTR MaLR 0 365 1 457 264 37 37 chrX 61386660 61386823 -115587317 - L2 LINE L2 -427 2887 2725 658 249 12 57 chrX 61387127 61387372 -115586768 - L2 LINE L2 -764 2550 2317 375 199 81 29 chrX 61387372 61387508 -115586632 - L2 LINE L2 -1903 1411 1269 357 293 220 23 chrX 61388581 61388676 -115585464 + L2 LINE L2 3003 3078 -235 3524 110 67 0 chrX 61388676 61389195 -115584945 - MER41C LTR ERV1 0 554 1 357 293 220 23 chrX 61389195 61389358 -115584782 + L2 LINE L2 3078 3312 -1 224 197 14 42 chrX 61389804 61389875 -115584265 + G-rich Low_complexity Low_complexity 6 74 0 1302 117 10 0 chrX 61390415 61390620 -115583520 - MER4A LTR ERV1 0 664 458 5431 146 94 16 chrX 61390731 61391613 -115582527 + MER4B-int LTR ERV1 199 1011 -5747 4071 90 29 64 chrX 61391613 61392304 -115581836 + PABL_B LTR ERV1 1 667 0 5431 146 94 16 chrX 61392304 61392556 -115581584 + MER4B-int LTR ERV1 1011 1242 -5516 3013 31 21 23 chrX 61392556 61392940 -115581200 + L1PA3 LINE L1 5773 6155 0 5431 146 94 16 chrX 61392940 61393307 -115580833 + MER4B-int LTR ERV1 1242 1912 -4846 1489 139 45 24 chrX 61393311 61393599 -115580541 + MER4A LTR ERV1 371 664 0 220 229 14 29 chrX 61394138 61394208 -115579932 + C-rich Low_complexity Low_complexity 6 74 0 371 290 220 23 chrX 61394654 61394817 -115579323 - L2 LINE L2 -1 3312 3182 3524 110 67 0 chrX 61394817 61395336 -115578804 + MER41C LTR ERV1 1 554 0 371 290 220 23 chrX 61395336 61395431 -115578709 - L2 LINE L2 -131 3182 3003 375 199 81 29 chrX 61396504 61396640 -115577500 + L2 LINE L2 1269 1411 -1903 658 249 12 57 chrX 61396640 61396885 -115577255 + L2 LINE L2 2317 2550 -764 457 264 37 37 chrX 61397189 61397352 -115576788 + L2 LINE L2 2725 2887 -427 1933 198 73 80 chrX 61397811 61398539 -115575601 + MER50 LTR ERV1 12 734 0 6979 64 8 0 chrX 61398717 61400083 -115574057 + L1PA8 LINE L1 4834 6172 0 366 326 26 47 chrX 61402149 61402339 -115571801 - MIR SINE MIR -3 259 74 182 184 20 0 chrX 61402504 61402540 -115571600 + CT-rich Low_complexity Low_complexity 2 41 -10 1892 138 45 3 chrX 61402540 61402831 -115571309 - AluJb SINE Alu -9 303 1 182 184 20 0 chrX 61402831 61402843 -115571297 + CT-rich Low_complexity Low_complexity 41 51 0 223 220 0 34 chrX 61403162 61403221 -115570919 - L2 LINE L2 0 3313 3257 189 300 50 58 chrX 61403303 61403423 -115570717 + L2 LINE L2 3189 3307 -6 19081 101 9 23 chrX 61403475 61409929 -115564211 + L1PA7 LINE L1 3 6454 -15 1020 179 64 138 chrX 61410696 61411088 -115563052 - MLT1A1 LTR MaLR 0 365 3 216 0 0 0 chrX 61411849 61411873 -115562267 + (T)n Simple_repeat Simple_repeat 1 24 0 280 321 46 4 chrX 61412156 61412396 -115561744 - L1M4 LINE L1 -3437 2709 2460 2298 100 0 3 chrX 61413117 61413427 -115560713 - AluSc SINE Alu 0 309 1 192 97 0 0 chrX 61413751 61413782 -115560358 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1383 213 10 34 chrX 61413782 61414073 -115560067 - AluJb SINE Alu -28 284 1 1998 110 7 31 chrX 61414164 61414499 -115559641 + AluSx SINE Alu 1 328 0 2988 150 27 47 chrX 61415103 61415333 -115558807 + L1MB2 LINE L1 5585 5818 -353 2194 121 0 7 chrX 61415333 61415630 -115558510 - AluSx SINE Alu -16 296 2 2988 150 27 47 chrX 61415630 61415991 -115558149 + L1MB2 LINE L1 5818 6164 -7 480 313 243 33 chrX 61416045 61417080 -115557060 + L2 LINE L2 1784 3038 -234 2006 120 0 7 chrX 61417672 61417973 -115556167 - AluJb SINE Alu -13 299 1 731 239 6 6 chrX 61418291 61418450 -115555690 + MER5B DNA MER1_type 2 160 -18 340 275 0 44 chrX 61419582 61419673 -115554467 + L2 LINE L2 3226 3312 -1 2103 137 0 9 chrX 61420591 61420906 -115553234 - AluJb SINE Alu 0 312 1 1788 163 3 17 chrX 61421717 61422011 -115552129 + AluJb SINE Alu 1 290 -22 319 358 6 6 chrX 61422151 61422330 -115551810 + GA-rich Low_complexity Low_complexity 2 180 0 189 0 0 0 chrX 61423038 61423059 -115551081 + (A)n Simple_repeat Simple_repeat 1 21 0 1452 103 0 5 chrX 61423087 61423281 -115550859 - AluSg/x SINE Alu -16 296 104 24058 124 15 73 chrX 61423281 61428178 -115545962 - L1P LINE L1 -1523 4623 12 1800 181 180 62 chrX 61429037 61429616 -115544524 + MLT1E1 LTR MaLR 1 647 -7 938 213 16 7 chrX 61429623 61429900 -115544240 + MLT1E1-int LTR MaLR 1 398 -973 296 146 0 0 chrX 61430056 61430111 -115544029 + MLT1D LTR MaLR 449 503 -2 1789 245 59 4 chrX 61430146 61430640 -115543500 - MER97b DNA MER1_type? -531 522 2 4707 181 35 20 chrX 61430859 61431285 -115542855 - L1PA16 LINE L1 -18 6145 5727 1972 140 0 4 chrX 61431285 61431563 -115542577 - AluSx SINE Alu -19 293 17 4707 181 35 20 chrX 61431563 61433059 -115541081 - L1PA16 LINE L1 -436 5727 4140 617 260 25 20 chrX 61433059 61433255 -115540885 - MLT1J2 LTR MaLR -253 197 1 5570 178 36 40 chrX 61433416 61435514 -115538626 - L1MA8 LINE L1 -10 6281 4188 4129 35 0 0 chrX 61435514 61436034 -115538106 + L1PA4 LINE L1 5660 6182 0 5570 178 36 40 chrX 61436034 61436225 -115537915 - L1MA8 LINE L1 -2103 4188 3998 21 0 0 0 chrX 61436230 61436251 -115537889 + AT_rich Low_complexity Low_complexity 1 21 0 6131 151 26 81 chrX 61436251 61437664 -115536476 - L1MA1 LINE L1 0 7721 6320 703 134 5 3 chrX 61437664 61437885 -115536255 + AluSx SINE Alu 11 295 -17 6131 151 26 81 chrX 61437885 61439008 -115535132 - L1MA1 LINE L1 -1401 6320 5137 2471 105 40 6 chrX 61439010 61439362 -115534778 - THE1B LTR MaLR 0 364 1 9185 135 62 2 chrX 61439362 61440852 -115533288 - THE1B-int LTR MaLR 0 1580 1 2646 118 0 0 chrX 61440852 61441216 -115532924 - THE1B LTR MaLR 0 364 1 3258 183 61 7 chrX 61441221 61442053 -115532087 - L1MA1 LINE L1 -2431 5134 4258 10743 203 12 7 chrX 61442068 61442425 -115531715 - L1PB1 LINE L1 -1 6866 6512 228 35 0 0 chrX 61442425 61442454 -115531686 + (TA)n Simple_repeat Simple_repeat 2 30 0 10743 203 12 7 chrX 61442454 61445671 -115528469 - L1PB1 LINE L1 -355 6512 3278 4346 215 55 10 chrX 61445669 61447660 -115526480 - L1PB1 LINE L1 -4614 2249 8 * 15367 195 64 27 chrX 61447687 61451783 -115522357 - L1MA1 LINE L1 -3301 4264 12 1734 156 14 3 chrX 61451780 61452140 -115522000 - L1 LINE L1 -2130 4198 3835 * 710 236 19 19 chrX 61452626 61452838 -115521302 + PABL_B LTR ERV1 456 667 0 1012 204 115 3 chrX 61452839 61453153 -115520987 - L1 LINE L1 -2486 3842 3494 1549 146 0 0 chrX 61453158 61453404 -115520736 - MER4B LTR ERV1 -4 606 361 28 29 0 0 chrX 61453404 61453439 -115520701 + AT_rich Low_complexity Low_complexity 1 35 0 5547 159 22 10 chrX 61453439 61453794 -115520346 - L1PB1 LINE L1 -8 7581 7232 564 115 0 0 chrX 61453794 61453898 -115520242 + (TA)n Simple_repeat Simple_repeat 2 105 0 5547 159 22 10 chrX 61453898 61454794 -115519346 - L1PB1 LINE L1 -357 7232 6306 197 33 33 0 chrX 61454794 61454824 -115519316 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5547 159 22 10 chrX 61454824 61455241 -115518899 - L1PB1 LINE L1 -1283 6306 5895 841 186 21 31 chrX 61455241 61455435 -115518705 - L1 LINE L1 -5132 196 5 317 143 0 0 chrX 61455453 61455502 -115518638 - Tigger7 DNA MER2_type -2219 268 220 238 238 0 33 chrX 61456940 61457095 -115517045 + CT-rich Low_complexity Low_complexity 1 149 0 222 311 23 45 chrX 61457670 61457802 -115516338 + MIR SINE MIR 19 147 -61 355 272 117 0 chrX 61458165 61458268 -115515872 + MIR SINE MIR 32 146 -62 315 299 17 17 chrX 61458312 61458429 -115515711 + MIR SINE MIR 19 135 -73 207 313 0 0 chrX 61460603 61460651 -115513489 + L2 LINE L2 3234 3281 -32 3391 290 77 43 chrX 61460652 61462254 -115511886 + L2 LINE L2 1262 2918 -396 272 315 25 113 chrX 61463153 61463356 -115510784 + MIR3 SINE MIR 9 193 -15 1759 216 10 26 chrX 61464028 61464524 -115509616 - L1PB1 LINE L1 -2097 5487 5000 775 164 0 0 chrX 61464524 61464676 -115509464 + MER6 DNA MER2_type 602 753 -112 33486 103 13 7 chrX 61464676 61465496 -115508644 - L1PA6 LINE L1 -6 6148 5335 4512 28 0 0 chrX 61465496 61466025 -115508115 - L1PA4 LINE L1 -4 6151 5623 33486 103 13 7 chrX 61466025 61471309 -115502831 - L1PA6 LINE L1 -819 5335 11 323 289 0 0 chrX 61471618 61471701 -115502439 + MER63 DNA MER1_type 37 745 -91 28579 105 26 96 chrX 61471827 61472725 -115501415 - L1PA12 LINE L1 -7 6161 5202 1846 148 7 3 chrX 61472725 61473036 -115501104 + AluSx SINE Alu 1 312 0 28579 105 26 96 chrX 61473036 61476142 -115497998 - L1PA12 LINE L1 -966 5202 2799 11674 24 1 0 chrX 61476142 61478284 -115495856 - L1PA2 LINE L1 0 6155 4013 28579 105 26 96 chrX 61478284 61480899 -115493241 - L1PA12 LINE L1 -3369 2799 2 4087 255 39 52 chrX 61480903 61483228 -115490912 - L1PB1 LINE L1 -3930 3654 16 480 326 40 18 chrX 61483267 61483491 -115490649 + MIR SINE MIR 32 260 -2 219 146 0 0 chrX 61483492 61483533 -115490607 + (CAT)n Simple_repeat Simple_repeat 1 41 0 6985 54 33 3 chrX 61483691 61484559 -115489581 + MER11D LTR ERVK 4 897 0 2172 138 0 0 chrX 61485118 61485423 -115488717 + AluSx SINE Alu 1 305 -7 207 379 0 0 chrX 61485693 61485796 -115488344 - MIR SINE MIR -12 250 148 50 31 0 0 chrX 61485809 61485873 -115488267 + AT_rich Low_complexity Low_complexity 1 64 0 12261 179 70 17 chrX 61487020 61492843 -115481297 + L1PB1 LINE L1 3 6201 -666 9245 53 10 1 chrX 61492843 61494906 -115479234 + L1PA5 LINE L1 4136 6164 0 12261 179 70 17 chrX 61494906 61495219 -115478921 + L1PB1 LINE L1 6201 6496 -371 369 62 0 0 chrX 61495219 61495267 -115478873 + (TA)n Simple_repeat Simple_repeat 2 49 0 1345 197 23 13 chrX 61495270 61495575 -115478565 + L1P3 LINE L1 1286 1593 -4868 214 118 78 0 chrX 61495575 61495677 -115478463 + (TA)n Simple_repeat Simple_repeat 1 110 0 2406 133 3 3 chrX 61495697 61496080 -115478060 + L1PB1 LINE L1 6483 6865 -2 349 254 0 0 chrX 61497447 61497514 -115476626 - MER5A DNA MER1_type -1 188 122 518 122 0 0 chrX 61497517 61497599 -115476541 - L1P3 LINE L1 -4908 1553 1472 585 248 8 8 chrX 61497608 61497725 -115476415 - MER5A DNA MER1_type -72 117 1 2036 136 0 7 chrX 61497765 61498067 -115476073 + AluSx SINE Alu 1 300 -12 2126 100 0 4 chrX 61498203 61498482 -115475658 - AluSg SINE Alu -32 278 1 556 303 240 6 chrX 61498485 61498851 -115475289 - L2 LINE L2 -1531 1783 1332 6717 175 13 16 chrX 61498884 61501633 -115472507 + L1P3 LINE L1 3 2787 -3674 4548 98 11 0 chrX 61501641 61502292 -115471848 + L1PA8A LINE L1 5472 6129 -2 339 324 19 0 chrX 61502292 61502397 -115471743 - L2 LINE L2 -1969 1345 1239 189 107 0 0 chrX 61504019 61504047 -115470093 + (A)n Simple_repeat Simple_repeat 1 28 0 2190 77 17 7 chrX 61504286 61504573 -115469567 + AluSg SINE Alu 1 290 -20 23 33 0 0 chrX 61504676 61504706 -115469434 + AT_rich Low_complexity Low_complexity 1 30 0 2555 163 48 0 chrX 61505814 61506273 -115467867 - L1PA16 LINE L1 -11 7593 7113 7985 143 13 61 chrX 61506266 61508329 -115465811 - L1PA8 LINE L1 -6 6166 4007 446 33 0 0 chrX 61508329 61508390 -115465750 + L1PA2 LINE L1 6095 6155 0 7985 143 13 61 chrX 61508390 61512789 -115461351 - L1PA8 LINE L1 -2165 4007 7 899 186 0 22 chrX 61512798 61512981 -115461159 - L1PA16 LINE L1 -480 7124 6946 * 8963 248 47 27 chrX 61512961 61516245 -115457895 - L1PA16 LINE L1 -961 6623 3275 306 344 108 36 chrX 61516509 61516759 -115457381 - L1M2 LINE L1 -5786 1063 796 233 296 50 100 chrX 61517011 61517271 -115456869 - L1PA16 LINE L1 -5795 1786 1540 212 220 17 34 chrX 61517516 61517575 -115456565 + GA-rich Low_complexity Low_complexity 4 61 0 312 376 19 0 chrX 61517645 61517807 -115456333 - MIR SINE MIR -2 260 96 364 343 97 20 chrX 61517808 61518056 -115456084 - L1MC4a LINE L1 -1877 5931 5665 368 318 107 19 chrX 61518090 61518351 -115455789 - L1MC4a LINE L1 -1331 4815 4532 376 310 0 4 chrX 61518545 61518719 -115455421 + MIR SINE MIR 14 249 -13 29 0 0 0 chrX 61518761 61518790 -115455350 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chrX 61519303 61519324 -115454816 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 279 179 18 0 chrX 61519326 61519382 -115454758 + MLT1A1 LTR MaLR 309 365 0 40586 53 2 1 chrX 61519506 61525654 -115448486 - L1PA4 LINE L1 -1 6154 4 2625 102 3 0 chrX 61525875 61526229 -115447911 - THE1A LTR MaLR 0 355 1 262 259 74 19 chrX 61526355 61526463 -115447677 + MIR SINE MIR 93 206 -56 2123 204 2 2 chrX 61526632 61527098 -115447042 - L1P LINE L1 -1280 4866 4401 2272 115 14 0 chrX 61527117 61527473 -115446667 - L1PB1 LINE L1 -2 6149 5789 290 183 98 0 chrX 61527489 61527571 -115446569 - L1MC4 LINE L1 -1339 6703 6614 * 3884 191 14 11 chrX 61527562 61529133 -115445007 - L1PB1 LINE L1 -360 5791 4279 2028 166 20 62 chrX 61529120 61529608 -115444532 + L1PB2 LINE L1 4857 5328 -840 * 1837 64 0 0 chrX 61529608 61529841 -115444299 - L1PA8 LINE L1 0 6172 5940 2028 166 20 62 chrX 61529841 61529980 -115444160 + L1PB2 LINE L1 5328 5471 -697 7774 19 6 0 chrX 61529980 61531066 -115443074 - L1PA2 LINE L1 0 6155 5068 8054 35 0 0 chrX 61531066 61532077 -115442063 + L1PA2 LINE L1 4059 5069 -1077 3106 187 16 40 chrX 61532077 61532763 -115441377 + L1PB2 LINE L1 5459 6132 -19 2210 180 0 0 chrX 61532781 61533175 -115440965 + L1PA13 LINE L1 5766 6159 -4 23 33 0 0 chrX 61533365 61533395 -115440745 + AT_rich Low_complexity Low_complexity 1 30 0 5573 170 11 2 chrX 61533411 61535518 -115438622 + L1PB1 LINE L1 4010 6132 -19 1391 185 74 57 chrX 61535520 61535925 -115438215 - MSTA LTR MaLR -16 412 1 8490 161 7 35 chrX 61535929 61537546 -115436594 - MSTA-int LTR MaLR -6 1574 3 1829 188 94 10 chrX 61537548 61537941 -115436199 - MSTA LTR MaLR 0 428 3 256 313 104 26 chrX 61538219 61538334 -115435806 + L2 LINE L2 3189 3312 -1 4599 202 35 10 chrX 61538847 61539934 -115434206 + L1MC3 LINE L1 6663 7776 -9 2530 192 48 4 chrX 61540214 61540709 -115433431 + LTR53 LTR ERVL 1 517 -2 295 143 0 71 chrX 61541100 61541170 -115432970 + L1MC1 LINE L1 6136 6200 -133 1618 135 20 101 chrX 61541172 61541520 -115432620 + L1PA15 LINE L1 5762 6081 -84 39812 50 23 3 chrX 61541522 61547555 -115426585 + L1PA3 LINE L1 2 5980 -175 503 180 0 10 chrX 61547555 61547655 -115426485 + L1PA15 LINE L1 6067 6165 0 39812 50 23 3 chrX 61547655 61547835 -115426305 + L1PA3 LINE L1 5980 6155 0 1929 238 39 23 chrX 61547807 61548455 -115425685 + L1M4c LINE L1 1058 1715 -4669 * 6931 207 16 15 chrX 61548663 61551574 -115422566 + L1PA12 LINE L1 1607 4521 -3063 4975 120 18 0 chrX 61551579 61552346 -115421794 + L1PA11 LINE L1 5392 6172 -2 9616 190 18 23 chrX 61552353 61553519 -115420621 + L1PA12 LINE L1 4511 5659 -1925 1732 170 32 0 chrX 61553519 61553796 -115420344 - AluSx SINE Alu -23 289 4 9616 190 18 23 chrX 61553796 61554938 -115419202 + L1PA12 LINE L1 5659 6806 -778 2198 80 13 0 chrX 61554938 61555237 -115418903 + L1PA7 LINE L1 5848 6150 -4 1670 153 37 7 chrX 61555247 61555542 -115418598 - L1PA10 LINE L1 -66 6102 5799 * 2733 172 64 3 chrX 61555539 61556404 -115417736 - L1M1 LINE L1 -631 5674 4741 231 36 0 0 chrX 61556409 61556437 -115417703 + (AAGTG)n Simple_repeat Simple_repeat 5 32 0 228 426 0 0 chrX 61556453 61556622 -115417518 + L2 LINE L2 2361 2529 -785 4024 89 29 0 chrX 61556632 61557192 -115416948 - L1PA7 LINE L1 -4 6150 5575 12048 100 7 8 chrX 61557195 61559069 -115415071 - L1PA7 LINE L1 -959 5187 3316 2222 75 58 0 chrX 61759912 61760205 -115213935 - AluY SINE Alu -1 310 1 1296 50 0 0 chrX 61761125 61761285 -115212855 - L1PA3 LINE L1 -3 6152 5993 21 0 0 0 chrX 61762340 61762361 -115211779 + AT_rich Low_complexity Low_complexity 1 21 0 7997 197 10 13 chrX 61762408 61764612 -115209528 - L1PA16 LINE L1 -77 6792 4592 2158 121 0 16 chrX 61764612 61764926 -115209214 - AluSc SINE Alu 0 309 1 7997 197 10 13 chrX 61764926 61765478 -115208662 - L1PA16 LINE L1 -2277 4592 4040 5603 95 9 17 chrX 61765481 61765523 -115208617 + L1PA10 LINE L1 5306 5347 -821 3560 81 2 0 chrX 61765523 61765990 -115208150 - L1PA6 LINE L1 -3 6151 5684 5603 95 9 17 chrX 61765990 61766812 -115207328 + L1PA10 LINE L1 5347 6163 -5 4970 249 42 14 chrX 61766843 61767783 -115206357 - L1PA16 LINE L1 -2812 4037 3125 2059 127 14 7 chrX 61767783 61768075 -115206065 - AluSx SINE Alu -18 294 1 4970 249 42 14 chrX 61768075 61769752 -115204388 - L1PA16 LINE L1 -3724 3125 1325 1148 190 38 0 chrX 61769953 61770256 -115203884 - L1 LINE L1 -2119 4027 3705 6399 221 5 3 chrX 61770261 61771961 -115202179 - L1PA16 LINE L1 -5480 1369 3 481 370 77 35 chrX 61772492 61772868 -115201272 + L2 LINE L2 2584 2975 -339 267 97 32 16 chrX 61773379 61773441 -115200699 + (TA)n Simple_repeat Simple_repeat 2 64 0 32 0 0 0 chrX 61773710 61773742 -115200398 + AT_rich Low_complexity Low_complexity 1 32 0 5977 161 10 7 chrX 61773742 61773927 -115200213 - L1MA3 LINE L1 0 6305 6122 1734 166 0 0 chrX 61773927 61774192 -115199948 - AluSx SINE Alu -12 300 36 5977 161 10 7 chrX 61774192 61776121 -115198019 - L1MA3 LINE L1 -183 6122 4182 2684 56 35 16 chrX 61776168 61776543 -115197597 - L1PA4 LINE L1 -3 6152 5771 * 11414 39 3 0 chrX 61776537 61778694 -115195446 - L1PA4 LINE L1 -4 6151 3990 16794 80 5 75 chrX 61778699 61779702 -115194438 - L1PA4 LINE L1 -3568 2578 1506 2686 33 0 0 chrX 61779702 61780007 -115194133 - AluY SINE Alu -6 305 1 16794 80 5 75 chrX 61780007 61781775 -115192365 - L1PA4 LINE L1 -4640 1506 1 9029 171 16 16 chrX 61781776 61784620 -115189520 - L1PA14 LINE L1 -39 7560 4719 1047 194 102 48 chrX 61784621 61784915 -115189225 + THE1C LTR MaLR 29 338 -37 5102 82 0 0 chrX 61784918 61785597 -115188543 - L1PA6 LINE L1 0 6154 5476 21004 87 9 3 chrX 61785687 61789638 -115184502 - L1PA6 LINE L1 -11 6143 2176 * 40356 56 2 1 chrX 61789634 61795781 -115178359 - L1PA4 LINE L1 -1 6154 3 12413 143 9 19 chrX 61795782 61797985 -115176155 - L1PA6 LINE L1 -3957 2189 9 232 163 0 41 chrX 61797985 61798034 -115176106 + THE1C LTR MaLR 382 428 0 8226 164 17 47 chrX 61798036 61799659 -115174481 + THE1C-int LTR MaLR 3 1576 -4 1284 170 158 24 chrX 61799663 61799992 -115174148 + THE1C LTR MaLR 1 373 -2 9084 189 18 9 chrX 61800002 61803179 -115170961 - L1PA14 LINE L1 -2875 4709 1500 1105 223 5 0 chrX 61803177 61803401 -115170739 - L1PA14 LINE L1 -7351 230 6 * 4872 196 19 9 chrX 61803405 61803627 -115170513 - L1 LINE L1 -1954 4192 3974 2841 10 0 0 chrX 61803627 61803935 -115170205 - AluYb8 SINE Alu -10 308 1 4872 196 19 9 chrX 61803935 61804847 -115169293 - L1 LINE L1 -2172 3974 3047 * 14977 150 21 17 chrX 61804844 61807540 -115166600 - L1PA8 LINE L1 -6 7585 4847 2581 14 0 0 chrX 61807540 61807821 -115166319 - AluYb8 SINE Alu 0 318 38 14977 150 21 17 chrX 61807821 61809356 -115164784 - L1PA8 LINE L1 -2744 4847 3320 3239 250 47 24 chrX 61810056 61811376 -115162764 - L1MDb LINE L1 -4801 1605 126 396 0 0 0 chrX 61811459 61811503 -115162637 + (TA)n Simple_repeat Simple_repeat 2 45 0 228 35 0 0 chrX 61812324 61812353 -115161787 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 592 312 111 28 chrX 61812415 61812668 -115161472 - L3 LINE CR1 -475 1102 829 282 159 0 0 chrX 61812680 61812749 -115161391 + CT-rich Low_complexity Low_complexity 2 70 0 550 326 52 0 chrX 61814544 61814716 -115159424 + MIR SINE MIR 8 188 -74 384 22 0 0 chrX 61814716 61814761 -115159379 + (TC)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chrX 61814760 61814786 -115159354 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 315 311 139 8 chrX 61815247 61815369 -115158771 + MIR3 SINE MIR 9 146 -62 268 197 0 30 chrX 61815701 61815767 -115158373 - L1M4 LINE L1 -866 5280 5217 1928 168 50 13 chrX 61815785 61816161 -115157979 - MLT1B LTR MaLR 0 390 1 2057 213 36 17 chrX 61816161 61816624 -115157516 - MLT1B-int LTR MaLR 0 1651 950 325 262 12 0 chrX 61816746 61816830 -115157310 - MLT1B-int LTR MaLR -971 764 680 1935 236 34 0 chrX 61816953 61817483 -115156657 - MLT1B-int LTR MaLR -702 669 21 261 219 0 0 chrX 61817579 61817661 -115156479 - L1M4c LINE L1 -5322 1062 981 1202 225 50 30 chrX 61817667 61818005 -115156135 - MLT1B LTR MaLR -45 345 1 2786 223 49 29 chrX 61818025 61818983 -115155157 - L1M4c LINE L1 -4794 1852 814 2113 122 0 3 chrX 61818983 61819290 -115154850 + AluSg SINE Alu 1 306 0 2786 223 49 29 chrX 61819290 61819498 -115154642 - L1M4c LINE L1 -5832 814 612 285 245 122 0 chrX 61819935 61820074 -115154066 - L1M4c LINE L1 -6382 160 5 1077 211 59 13 chrX 61820074 61820508 -115153632 - L1MDa LINE L1 -3954 2586 2112 2285 124 34 22 chrX 61820746 61821102 -115153038 + THE1B LTR MaLR 2 361 -3 10063 116 31 38 chrX 61821105 61822695 -115151445 + THE1B-int LTR MaLR 1 1580 0 2006 148 32 51 chrX 61822695 61823025 -115151115 + THE1B LTR MaLR 1 325 -39 1963 127 7 23 chrX 61823025 61823325 -115150815 - AluSx SINE Alu -17 295 1 2006 148 32 51 chrX 61823325 61823365 -115150775 + THE1B LTR MaLR 325 364 0 258 324 108 0 chrX 61823516 61823627 -115150513 + MIR SINE MIR 140 262 0 198 0 0 0 chrX 61823753 61823775 -115150365 + (TTTTTA)n Simple_repeat Simple_repeat 4 25 0 2010 143 3 0 chrX 61823796 61824082 -115150058 - AluSx SINE Alu -25 287 1 311 280 100 7 chrX 61824972 61825122 -115149018 - L1MA9 LINE L1 -38 6274 6111 * 8867 144 5 152 chrX 61825121 61827330 -115146810 + L1PA16 LINE L1 1 1885 -4964 2372 137 70 7 chrX 61827330 61827733 -115146407 + MSTA LTR MaLR 1 428 0 803 129 27 0 chrX 61827733 61827880 -115146260 + MSTA-int LTR MaLR 1 151 -1500 * 4830 195 29 6 chrX 61827877 61828834 -115145306 + MSTA-int LTR MaLR 629 1607 -44 211 146 0 62 chrX 61828834 61828863 -115145277 + (T)n Simple_repeat Simple_repeat 1 27 -18 7654 28 8 0 chrX 61828863 61830265 -115143875 - L1PA3 LINE L1 -4 6151 4745 211 146 0 62 chrX 61830265 61830283 -115143857 + (T)n Simple_repeat Simple_repeat 27 45 0 39073 46 25 2 chrX 61830286 61833551 -115140589 - L1PA3 LINE L1 0 6155 2688 8468 63 4 1 chrX 61833551 61834619 -115139521 - MER11C LTR ERVK 0 1071 1 39073 46 25 2 chrX 61834619 61837357 -115136783 - L1PA3 LINE L1 -3467 2688 13 305 111 0 37 chrX 61837367 61837421 -115136719 + MSTA-int LTR MaLR 1594 1645 -6 1411 198 48 45 chrX 61837426 61837747 -115136393 + MSTA LTR MaLR 1 320 -55 2292 139 8 5 chrX 61837747 61838121 -115136019 + THE1C LTR MaLR 1 375 0 9328 129 35 43 chrX 61838121 61839713 -115134427 + THE1C-int LTR MaLR 1 1580 0 2338 152 3 8 chrX 61839715 61840090 -115134050 + THE1C LTR MaLR 3 375 0 1411 198 48 45 chrX 61840090 61840138 -115134002 + MSTA LTR MaLR 320 375 0 1308 171 104 19 chrX 61840138 61840447 -115133693 + MSTA LTR MaLR 94 428 0 11658 225 15 24 chrX 61840447 61840735 -115133405 + L1PA16 LINE L1 1881 2170 -4679 1907 122 66 9 chrX 61840735 61841055 -115133085 - L1PA13 LINE L1 -8 6155 5818 11658 225 15 24 chrX 61841055 61844916 -115129224 + L1PA16 LINE L1 2170 5989 -860 257 0 0 29 chrX 61844926 61844960 -115129180 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2628 123 2 7 chrX 61844960 61845384 -115128756 + L1PA16 LINE L1 6062 6483 -386 333 0 0 0 chrX 61845386 61845459 -115128681 + (GA)n Simple_repeat Simple_repeat 1 73 0 1806 191 11 5 chrX 61845558 61845940 -115128200 + L1PA16 LINE L1 6485 6868 -1 188 274 107 48 chrX 61846186 61846270 -115127870 - L3 LINE CR1 -196 1381 1293 1065 241 20 53 chrX 61846511 61846882 -115127258 + MLT2C1 LTR ERVL 1 428 -36 2148 114 3 3 chrX 61847405 61847694 -115126446 + AluSp SINE Alu 1 289 -24 2698 254 67 42 chrX 61848022 61848517 -115125623 + L1M4 LINE L1 14 495 -6151 1442 233 54 50 chrX 61848517 61848981 -115125159 - MER31B LTR ERV1 0 466 1 2698 254 67 42 chrX 61848981 61850119 -115124021 + L1M4 LINE L1 495 1603 -5043 8345 136 9 2 chrX 61850119 61851396 -115122744 + HSMAR1 DNA Mariner 1 1287 0 2698 254 67 42 chrX 61851396 61851421 -115122719 + L1M4 LINE L1 1603 1626 -5020 1731 175 0 24 chrX 61851421 61851718 -115122422 - AluJo SINE Alu -22 290 1 2698 254 67 42 chrX 61851718 61852147 -115121993 + L1M4 LINE L1 1626 2135 -4511 889 200 33 17 chrX 61852193 61852373 -115121767 - AluJb SINE Alu -109 203 21 826 177 60 110 chrX 61852387 61852823 -115121317 + L1M4 LINE L1 2246 2659 -3987 243 61 0 0 chrX 61852820 61852853 -115121287 + L1M3 LINE L1 5441 5473 -698 * 1030 233 100 56 chrX 61852854 61853284 -115120856 + MLT2B1 LTR ERVL 4 452 -68 369 213 29 7 chrX 61853297 61853433 -115120707 + (TA)n Simple_repeat Simple_repeat 2 140 0 248 0 0 0 chrX 61853437 61853466 -115120674 - MLT2C1 LTR ERVL -8 389 361 204 97 0 0 chrX 61853470 61853501 -115120639 + (TATG)n Simple_repeat Simple_repeat 2 32 0 941 172 33 37 chrX 61853513 61853728 -115120412 + L1M3 LINE L1 5467 5680 -491 614 126 45 0 chrX 61853726 61853837 -115120303 - L1MA9 LINE L1 -52 6260 6145 * 2246 240 68 4 chrX 61853839 61853999 -115120141 + L1M4 LINE L1 2731 2879 -3765 440 72 14 0 chrX 61853999 61854068 -115120072 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2246 240 68 4 chrX 61854068 61854660 -115119480 + L1M4 LINE L1 2879 3531 -3113 753 139 0 78 chrX 61854678 61854844 -115119296 + L1MB5 LINE L1 465 617 -6872 653 73 0 0 chrX 61854848 61854930 -115119210 + AluSq SINE Alu 5 86 -226 7712 35 0 1 chrX 61854930 61855828 -115118312 + MER11D LTR ERVK 1 897 0 1546 145 0 4 chrX 61855828 61856062 -115118078 + AluSq SINE Alu 81 313 0 318 179 90 0 chrX 61856063 61856130 -115118010 + L1MB5 LINE L1 610 682 -6807 1854 183 14 154 chrX 61856160 61856887 -115117253 + L1MB5 LINE L1 607 1231 -6258 576 222 56 25 chrX 61856884 61857082 -115117058 + L1MB5 LINE L1 2517 2720 -4845 * 3528 155 50 0 chrX 61857106 61857764 -115116376 + L1MA4A LINE L1 5607 6297 -6 1408 153 29 0 chrX 61857822 61858097 -115116043 + L1MA8 LINE L1 6005 6287 -4 6275 233 30 28 chrX 61858123 61859923 -115114217 + L1MB5 LINE L1 4480 6276 -1317 7303 31 12 0 chrX 61859923 61860801 -115113339 + L1PA3 LINE L1 5264 6152 -3 6275 233 30 28 chrX 61860801 61860995 -115113145 + L1MB5 LINE L1 6276 6468 -1125 1463 219 51 66 chrX 61860995 61861466 -115112674 - MLT2C2 LTR ERVL 0 464 1 6275 233 30 28 chrX 61861466 61862555 -115111585 + L1MB5 LINE L1 6468 7585 -8 377 299 122 9 chrX 61862812 61863026 -115111114 - L2 LINE L2 -779 2535 2298 270 286 143 25 chrX 61863117 61863236 -115110904 - L2 LINE L2 -4 3268 3136 222 275 264 0 chrX 61863460 61863551 -115110589 + MER5B DNA MER1_type 63 177 -1 1839 286 49 27 chrX 61863755 61864312 -115109828 - L2 LINE L2 -1036 2278 1700 2111 142 0 0 chrX 61864312 61864608 -115109532 - AluSx SINE Alu -16 296 1 1839 286 49 27 chrX 61864608 61864780 -115109360 - L2 LINE L2 -1614 1700 1533 11983 178 55 16 chrX 61864804 61868740 -115105400 - L1MA2 LINE L1 -298 7425 3332 6385 191 66 12 chrX 61868738 61871111 -115103029 - L1MA1 LINE L1 0 6302 3816 * 887 315 25 47 chrX 61871489 61871959 -115102181 + LTR16B LTR ERVL 3 462 -2 1320 209 51 79 chrX 61871961 61872530 -115101610 + L1ME LINE L1 5237 5787 -377 285 339 32 8 chrX 61873091 61873215 -115100925 + L2 LINE L2 2855 2981 -291 2068 193 17 17 chrX 61874121 61874536 -115099604 - MSTB1 LTR MaLR 0 432 18 578 288 57 0 chrX 61874572 61874749 -115099391 + MIR SINE MIR 15 201 -61 708 269 146 22 chrX 61874843 61875159 -115098981 - LTR18A LTR ERVL -2 355 1 37899 146 10 8 chrX 61875162 61881192 -115092948 - HERVL18 LTR ERVL -2 6045 2 743 247 158 29 chrX 61881199 61881515 -115092625 - LTR18A LTR ERVL 0 357 1 878 220 16 5 chrX 61881809 61881995 -115092145 - MER5A DNA MER1_type -1 188 1 301 325 54 18 chrX 61882595 61882761 -115091379 + MER5B DNA MER1_type 1 172 -6 381 306 93 38 chrX 61883424 61883607 -115090533 + MIR3 SINE MIR 1 193 -15 513 308 63 0 chrX 61883639 61883798 -115090342 + MIR SINE MIR 7 175 -87 399 378 42 46 chrX 61884025 61884287 -115089853 + L2 LINE L2 2715 2975 -339 32 26 0 0 chrX 61884544 61884583 -115089557 + AT_rich Low_complexity Low_complexity 1 39 0 1018 203 47 11 chrX 61884628 61884904 -115089236 + L1MA8 LINE L1 5981 6266 -25 462 154 15 7 chrX 61884897 61885032 -115089108 + L1MA4 LINE L1 5817 6002 -298 * 27 29 0 0 chrX 61885045 61885079 -115089061 + AT_rich Low_complexity Low_complexity 1 34 0 216 318 112 9 chrX 61885205 61885312 -115088828 + L3 LINE CR1 470 587 -990 816 120 13 27 chrX 61885488 61885638 -115088502 - L1MA4 LINE L1 -4 6296 6149 3577 161 87 29 chrX 61885638 61886515 -115087625 - L1MA4 LINE L1 -4 6159 5347 2015 133 0 22 chrX 61886515 61886830 -115087310 + AluY SINE Alu 1 308 -3 3577 161 87 29 chrX 61886830 61886866 -115087274 - L1MA4 LINE L1 -816 5347 5315 1771 191 0 3 chrX 61886872 61887165 -115086975 - AluSx SINE Alu -20 292 1 2526 67 0 10 chrX 61887194 61887543 -115086597 - AluY SINE Alu 0 346 1 5234 161 20 27 chrX 61887544 61888697 -115085443 - L1MA4 LINE L1 -827 5319 4175 191 287 96 26 chrX 61888851 61888966 -115085174 - L2 LINE L2 -12 3260 3138 4549 206 11 5 chrX 61889129 61891028 -115083112 - L1PA15 LINE L1 -3 6162 4173 3623 163 56 16 chrX 61891028 61892080 -115082060 - Tigger1 DNA MER2_type -665 1753 578 27 29 0 0 chrX 61892080 61892114 -115082026 + AT_rich Low_complexity Low_complexity 1 34 0 8109 41 0 6 chrX 61892114 61893897 -115080243 - L1PA3 LINE L1 -3 6152 4376 6508 35 0 0 chrX 61893898 61894714 -115079426 + L1PA3 LINE L1 3567 4382 -1764 2745 192 30 11 chrX 61894714 61895286 -115078854 - Tigger1 DNA MER2_type -1830 588 6 404 185 65 0 chrX 61895293 61895401 -115078739 + L1MC3 LINE L1 7663 7777 -8 2067 148 3 0 chrX 61895414 61895718 -115078422 + AluSx SINE Alu 1 305 -7 229 231 0 132 chrX 61895722 61895813 -115078327 - L2 LINE L2 -556 2758 2680 2590 199 11 35 chrX 61895834 61896406 -115077734 - MER89 LTR ERV1 0 559 2 20601 137 11 21 chrX 61896744 61900370 -115073770 + L1PA6 LINE L1 11 3598 -2548 2538 20 13 0 chrX 61900371 61900670 -115073470 - L1PA4 LINE L1 -1 6154 5852 12295 89 1 1 chrX 61900679 61903201 -115070939 + L1PA6 LINE L1 3601 6152 -2 25 31 0 0 chrX 61903362 61903394 -115070746 + AT_rich Low_complexity Low_complexity 1 32 0 4174 178 38 24 chrX 61903434 61903797 -115070343 - L1PB4 LINE L1 -3 6856 6500 258 32 0 0 chrX 61903797 61903828 -115070312 + (TG)n Simple_repeat Simple_repeat 1 31 0 4174 178 38 24 chrX 61903828 61905116 -115069024 - L1PB4 LINE L1 -359 6500 5180 1548 118 4 0 chrX 61905122 61905430 -115068710 + L1P3 LINE L1 1482 1781 -4680 6100 214 16 29 chrX 61905430 61907168 -115066972 - L1PB4 LINE L1 -1693 5156 3441 325 284 69 92 chrX 61907177 61907526 -115066614 - L1PB4 LINE L1 -6336 514 174 380 129 0 14 chrX 61907526 61907596 -115066544 + (TTCC)n Simple_repeat Simple_repeat 1 69 0 299 25 25 0 chrX 61907612 61907652 -115066488 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 1044 208 45 83 chrX 61907676 61907863 -115066277 - AluJo SINE Alu -4 308 134 212 0 36 0 chrX 61907863 61907891 -115066249 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1044 208 45 83 chrX 61907891 61907991 -115066149 - AluJo SINE Alu -178 134 32 420 239 0 103 chrX 61908035 61908132 -115066008 - L1PB4 LINE L1 -6680 169 64 2225 120 0 0 chrX 61908132 61908431 -115065709 + AluSq SINE Alu 1 299 -14 1464 78 0 0 chrX 61908433 61908624 -115065516 + L1PA8 LINE L1 5968 6158 -14 420 239 0 103 chrX 61908624 61908719 -115065421 - L1PB4 LINE L1 -6786 63 1 2806 122 14 2 chrX 61910841 61911275 -115062865 - LTR56 LTR ERV1 -6 439 1 897 253 125 24 chrX 61911476 61911765 -115062375 + MER102a DNA MER1_type 8 325 -5 4982 177 25 27 chrX 61911820 61913094 -115061046 - L1MA9 LINE L1 -4 6308 5042 6089 175 43 27 chrX 61913099 61915509 -115058631 - L1MA4A LINE L1 -4 7361 4921 263 70 0 23 chrX 61915509 61915552 -115058588 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 41804 54 5 3 chrX 61915552 61918442 -115055698 - L1PA4 LINE L1 -24 6131 3246 5932 48 1 0 chrX 61918442 61919172 -115054968 - L1PA3 LINE L1 -3 6152 5422 41804 54 5 3 chrX 61919172 61922397 -115051743 - L1PA4 LINE L1 -2909 3246 13 623 206 0 0 chrX 61922409 61922550 -115051590 - L1MA4A LINE L1 -2299 4909 4769 1428 197 42 3 chrX 61922551 61922936 -115051204 - L1MA4A LINE L1 -2667 4541 4142 2120 118 3 3 chrX 61922979 61923285 -115050855 - AluSq SINE Alu -7 306 1 4318 173 24 15 chrX 61923435 61924306 -115049834 - L1PA16 LINE L1 -7 6159 5281 2893 215 38 14 chrX 61924339 61925178 -115048962 - L1MA4A LINE L1 -3223 3985 3167 2021 149 3 0 chrX 61925178 61925487 -115048653 - AluSp SINE Alu 0 313 4 2893 215 38 14 chrX 61925487 61926110 -115048030 - L1MA4A LINE L1 -4041 3167 1970 488 310 99 16 chrX 61926252 61926494 -115047646 + MIR SINE MIR 1 262 0 205 229 42 0 chrX 61926696 61926744 -115047396 + L2 LINE L2 3204 3253 -19 490 191 0 0 chrX 61926774 61926863 -115047277 + MLT1B LTR MaLR 1 89 -301 6334 36 0 0 chrX 61926863 61927636 -115046504 + L1P LINE L1 1344 2116 -4030 3267 265 31 1 chrX 61927635 61928535 -115045605 - L1MA4A LINE L1 -5223 1986 1012 * 7956 210 28 14 chrX 61928548 61930870 -115043270 - L1M1 LINE L1 -2068 5497 3143 13427 195 27 7 chrX 61930878 61936171 -115037969 - L1PB1 LINE L1 -1 6866 1309 2918 157 25 21 chrX 61936172 61936695 -115037445 - L1PB1 LINE L1 -5705 1158 634 979 194 10 0 chrX 61936695 61936891 -115037249 - L1PB1 LINE L1 -6663 200 3 14879 191 46 24 chrX 61936896 61936984 -115037156 - L1M1 LINE L1 -4395 3170 3085 2085 105 20 10 chrX 61936984 61937279 -115036861 - AluSg SINE Alu -2 308 11 14879 191 46 24 chrX 61937279 61940230 -115033910 - L1M1 LINE L1 -4480 3085 66 819 287 40 34 chrX 61940261 61940589 -115033551 - L1PA13 LINE L1 -5169 1618 1289 2236 302 68 27 chrX 61940744 61941485 -115032655 - L1PA13 LINE L1 -6016 771 1 1120 232 27 13 chrX 61941494 61941797 -115032343 - L1MB2 LINE L1 -31 6140 5832 331 279 116 7 chrX 61941803 61941950 -115032190 - MIR SINE MIR -15 247 85 268 174 72 0 chrX 61943229 61943298 -115030842 + L1PA8 LINE L1 6099 6172 0 260 53 26 0 chrX 61943401 61943439 -115030701 + (CAAAAA)n Simple_repeat Simple_repeat 3 41 0 1750 161 48 0 chrX 61943467 61943758 -115030382 + AluJb SINE Alu 1 305 -7 1641 255 6 3 chrX 61944351 61944696 -115029444 + L1PA14 LINE L1 966 1311 -6270 12021 193 7 45 chrX 61944714 61947587 -115026553 - L1PB1 LINE L1 -2 6865 4210 1767 106 117 18 chrX 61947587 61947861 -115026279 - AluSg SINE Alu -2 308 8 12021 193 7 45 chrX 61947861 61949225 -115024915 - L1PB1 LINE L1 -2657 4210 2796 597 146 0 0 chrX 61949237 61949340 -115024800 - L1PB1 LINE L1 -4129 2734 2632 * 11444 208 16 4 chrX 61949339 61951944 -115022196 + L1PA14 LINE L1 4233 6866 -740 41098 48 22 2 chrX 61951945 61957973 -115016167 + L1PA2 LINE L1 1 6154 -1 4462 133 7 7 chrX 61957995 61958730 -115015410 + L1PA14 LINE L1 6851 7585 -14 2151 80 25 3 chrX 61958730 61958891 -115015249 - AluY SINE Alu -19 292 121 201 108 0 0 chrX 61958891 61958928 -115015212 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 2151 80 25 3 chrX 61958928 61959052 -115015088 - AluY SINE Alu -190 121 1 180 405 16 32 chrX 61959735 61959861 -115014279 + MIR SINE MIR 17 140 -68 361 319 6 19 chrX 61960327 61960487 -115013653 + A-rich Low_complexity Low_complexity 2 159 0 904 189 60 36 chrX 61961344 61961499 -115012641 + L1MA4 LINE L1 6042 6207 -93 2090 142 80 0 chrX 61961499 61961836 -115012304 - THE1B LTR MaLR 0 364 1 904 189 60 36 chrX 61961836 61961928 -115012212 + L1MA4 LINE L1 6207 6295 -5 2053 126 0 7 chrX 61962008 61962302 -115011838 - AluSg SINE Alu -18 292 1 525 403 80 9 chrX 61962644 61963195 -115010945 - L3 LINE CR1 -2 1575 986 4654 38 0 0 chrX 61963243 61963802 -115010338 + L1PA4 LINE L1 5596 6154 -1 377 278 0 0 chrX 61963986 61964076 -115010064 - MIR SINE MIR -86 122 33 521 327 39 29 chrX 61965100 61965381 -115008759 + HAL1 LINE L1 2 285 -2222 933 242 132 25 chrX 61965425 61965743 -115008397 - MLT1I LTR MaLR -4 405 54 634 303 114 42 chrX 61965797 61966157 -115007983 + HAL1 LINE L1 324 709 -1798 1190 249 42 34 chrX 61966316 61966794 -115007346 + HAL1 LINE L1 1014 1495 -1012 887 262 42 57 chrX 61967021 61967177 -115006963 + HAL1 LINE L1 1498 1655 -852 2754 177 7 0 chrX 61967177 61967641 -115006499 + MLT1C LTR MaLR 1 467 0 887 262 42 57 chrX 61967641 61967816 -115006324 + HAL1 LINE L1 1655 1824 -683 318 253 95 0 chrX 61968073 61968168 -115005972 + MLT1J2 LTR MaLR 347 450 0 235 289 123 35 chrX 61968788 61968902 -115005238 - MIR SINE MIR -138 124 1 1880 180 5 40 chrX 61969294 61969672 -115004468 + MER47A DNA MER2_type 2 366 0 352 188 38 12 chrX 61970227 61970307 -115003833 - Tigger1 DNA MER2_type -4 2414 2333 2006 174 15 15 chrX 61970309 61970716 -115003424 - L1MA5 LINE L1 0 6300 5894 2920 100 5 2 chrX 61970716 61971133 -115003007 - L1PA13 LINE L1 0 6163 5742 1506 192 83 0 chrX 61971139 61971452 -115002688 - L1MA5 LINE L1 -421 5879 5541 1975 198 40 12 chrX 61971452 61971651 -115002489 + MSTB LTR MaLR 1 193 -233 2172 102 0 3 chrX 61971651 61971944 -115002196 + AluSc SINE Alu 1 292 -17 1975 198 40 12 chrX 61971944 61972143 -115001997 + MSTB LTR MaLR 193 410 -16 6385 183 34 21 chrX 61972159 61973756 -115000384 - L1MA5 LINE L1 -743 5403 3942 18518 188 22 11 chrX 61973782 61977560 -114996580 - L1MA1 LINE L1 0 7721 3984 2171 176 15 0 chrX 61977560 61977957 -114996183 - MER57A LTR ERV1 0 403 1 18518 188 22 11 chrX 61977957 61979450 -114994690 - L1MA1 LINE L1 -3737 3984 2508 1542 79 9 5 chrX 61979450 61979664 -114994476 - L1PA7 LINE L1 -10 6144 5930 18518 188 22 11 chrX 61979664 61982016 -114992124 - L1MA1 LINE L1 -5213 2508 13 2471 206 27 14 chrX 61982019 61982578 -114991562 - L1MA5 LINE L1 -2208 3938 3373 6413 162 28 27 chrX 61982578 61983531 -114990609 - Tigger1 DNA MER2_type -1228 1190 234 1819 179 0 0 chrX 61983531 61983828 -114990312 + AluSx SINE Alu 3 299 -13 6413 162 28 27 chrX 61983828 61984063 -114990077 - Tigger1 DNA MER2_type -2184 234 1 35 24 0 0 chrX 61984499 61984541 -114989599 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chrX 61984634 61984679 -114989461 + AT_rich Low_complexity Low_complexity 1 45 0 232 248 199 22 chrX 61984682 61984908 -114989232 + L1ME4a LINE L1 5825 6090 -31 1760 168 35 27 chrX 61986263 61986633 -114987507 - THE1C LTR MaLR 0 375 3 353 342 5 37 chrX 61986761 61986951 -114987189 + L1ME LINE L1 4984 5167 -979 24 32 0 0 chrX 61986975 61987006 -114987134 + AT_rich Low_complexity Low_complexity 1 31 0 791 329 36 10 chrX 61987109 61987413 -114986727 - MLT1I LTR MaLR 0 409 98 464 318 34 23 chrX 61987578 61987815 -114986325 + L1ME LINE L1 5414 5653 -468 292 282 96 64 chrX 61987818 61988237 -114985903 - HAL1 LINE L1 -970 1537 1106 2271 118 7 0 chrX 61988237 61988543 -114985597 - AluSg SINE Alu -2 308 1 269 230 27 0 chrX 61988740 61988814 -114985326 + MER116 DNA Mariner 1 76 -4 22 0 0 0 chrX 61988871 61988893 -114985247 + AT_rich Low_complexity Low_complexity 1 22 0 340 329 131 40 chrX 61988893 61989121 -114985019 + HAL1 LINE L1 2224 2479 -28 207 0 0 0 chrX 61989121 61989144 -114984996 + (TG)n Simple_repeat Simple_repeat 2 24 0 340 329 131 40 chrX 61989144 61989167 -114984973 + HAL1 LINE L1 2479 2498 -9 207 0 0 0 chrX 61989167 61989190 -114984950 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 306 237 43 101 chrX 61989197 61989336 -114984804 + L1M4 LINE L1 2173 2303 -3843 1623 290 45 119 chrX 61989413 61989837 -114984303 + L1PB4 LINE L1 3 457 -6392 2883 13 0 0 chrX 61989837 61990152 -114983988 - AluYb8 SINE Alu -3 315 1 1623 290 45 119 chrX 61990152 61991902 -114982238 + L1PB4 LINE L1 457 2014 -4835 7915 221 23 5 chrX 61991912 61994292 -114979848 + L1PB4 LINE L1 4082 6498 -361 268 235 0 60 chrX 61994292 61994475 -114979665 + (TA)n Simple_repeat Simple_repeat 2 173 0 1947 174 11 8 chrX 61994484 61994845 -114979295 + L1PB4 LINE L1 6485 6846 -13 4826 85 2 0 chrX 61995002 61995647 -114978493 - L1PA7 LINE L1 0 6154 5509 216 0 0 0 chrX 61995822 61995846 -114978294 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2961 166 28 5 chrX 61996758 61997323 -114976817 - L1PA15 LINE L1 -7 6158 5581 3381 240 35 37 chrX 61997330 61998485 -114975655 - L1PA13 LINE L1 -2587 4210 3059 6290 93 8 0 chrX 61998509 62000003 -114974137 - L1PA7 LINE L1 -11 6458 4958 12868 51 1 0 chrX 62000021 62002403 -114971737 - L1PA4 LINE L1 -2 6153 3764 8696 95 13 0 chrX 62002403 62003605 -114970535 - L1PA4 LINE L1 -4926 1220 3 11232 113 15 61 chrX 62003608 62005631 -114968509 - L1PA7 LINE L1 -1489 4972 3042 * 11261 125 3 2 chrX 62005627 62007283 -114966857 - L1PA7 LINE L1 -4797 1664 8 1132 222 69 23 chrX 62007266 62007613 -114966527 - L1PA13 LINE L1 -3706 3091 2729 * 3100 275 46 16 chrX 62007599 62008629 -114965511 - L1PA13 LINE L1 -4786 2001 941 1818 215 57 2 chrX 62008747 62009151 -114964989 + MSTB LTR MaLR 1 426 0 6578 233 11 37 chrX 62009151 62009723 -114964417 + MSTB-int LTR MaLR 1 586 -785 345 47 0 0 chrX 62009723 62009766 -114964374 + (TTA)n Simple_repeat Simple_repeat 3 45 0 5440 50 0 0 chrX 62009766 62010423 -114963717 - L1PA3 LINE L1 -18 6137 5481 6578 233 11 37 chrX 62010423 62011542 -114962598 + MSTB-int LTR MaLR 584 1365 -6 340 132 2 2 chrX 62011544 62011605 -114962535 + MSTB LTR MaLR 2 62 -366 40332 54 2 2 chrX 62011605 62017755 -114956385 + L1PA3 LINE L1 21 6167 0 8184 165 49 14 chrX 62017757 62019408 -114954732 - L1M1 LINE L1 -4380 3185 1477 870 220 37 5 chrX 62019412 62019630 -114954510 + ERVL LTR ERVL 3966 4190 -1574 1016 251 283 6 chrX 62019630 62020100 -114954040 + MLT2F LTR ERVL 3 602 -61 227 200 0 27 chrX 62020101 62020161 -114953979 + (TCTA)n Simple_repeat Simple_repeat 2 61 -13 1863 155 109 20 chrX 62020161 62020554 -114953586 - MSTA LTR MaLR 0 428 1 227 200 0 27 chrX 62020554 62020568 -114953572 + (TCTA)n Simple_repeat Simple_repeat 61 74 0 1868 242 40 25 chrX 62020710 62021260 -114952880 + MER74A LTR ERVL 1 558 0 634 111 0 0 chrX 62022890 62022980 -114951160 + 5S rRNA rRNA 1 90 -31 22 35 0 0 chrX 62022998 62023027 -114951113 + AT_rich Low_complexity Low_complexity 1 29 0 4236 234 14 5 chrX 62123789 62124927 -114849213 + L1 LINE L1 3685 4832 -1314 2532 123 2 7 chrX 62125031 62125437 -114848703 + L1PB1 LINE L1 5746 6149 -2 1505 258 6 3 chrX 62125455 62125800 -114848340 - L1PA12 LINE L1 -6270 1311 966 4578 97 0 3 chrX 62126220 62126930 -114847210 + L1P LINE L1 1881 2588 -3558 3371 113 0 2 chrX 62126925 62127463 -114846677 + L1P LINE L1 3990 4526 -1620 * 1752 192 0 3 chrX 62127563 62127854 -114846286 - AluSx SINE Alu -22 290 1 2486 70 0 10 chrX 62127878 62128226 -114845914 - AluY SINE Alu 0 345 1 5195 162 20 27 chrX 62128227 62129380 -114844760 - L1 LINE L1 -827 5319 4175 191 287 96 26 chrX 62129534 62129649 -114844491 - L2 LINE L2 -12 3260 3138 4550 204 11 6 chrX 62129812 62131700 -114842440 - L1PA15 LINE L1 -3 6162 4187 3623 163 56 16 chrX 62131711 62132763 -114841377 - Tigger1 DNA MER2_type -665 1753 578 27 29 0 0 chrX 62132763 62132797 -114841343 + AT_rich Low_complexity Low_complexity 1 34 0 7104 40 0 0 chrX 62132797 62133696 -114840444 - L1PA3 LINE L1 -3 6152 5254 1125 158 5 0 chrX 62133805 62134008 -114840132 + L1 LINE L1 3875 4078 -2068 2996 265 31 1 chrX 62134021 62134921 -114839219 + L1M2b LINE L1 1012 1986 -5223 * 6040 38 0 0 chrX 62134920 62135693 -114838447 - L1P LINE L1 -4030 2116 1344 461 191 0 0 chrX 62135693 62135782 -114838358 - MLT1B LTR MaLR -301 89 1 196 250 42 0 chrX 62135812 62135860 -114838280 - L2 LINE L2 -19 3253 3204 523 302 99 16 chrX 62136062 62136304 -114837836 - MIR SINE MIR 0 262 1 2645 218 40 18 chrX 62136445 62137068 -114837072 + L1M2b LINE L1 1970 2578 -4630 2090 143 3 0 chrX 62137068 62137375 -114836765 + AluSp SINE Alu 4 311 -2 2645 218 40 18 chrX 62137375 62138218 -114835922 + L1M2b LINE L1 2578 3985 -3223 4054 173 24 15 chrX 62138251 62139122 -114835018 + L1PA16 LINE L1 5281 6159 -7 2127 111 3 10 chrX 62139272 62139578 -114834562 + AluSq SINE Alu 1 304 -9 1335 198 44 3 chrX 62139621 62140005 -114834135 + L1M2b LINE L1 4142 4541 -2667 585 206 0 0 chrX 62140006 62140147 -114833993 + L1M2b LINE L1 4769 4909 -2299 33152 60 4 6 chrX 62140159 62143387 -114830753 + L1PA3 LINE L1 13 3232 -2914 5755 58 1 1 chrX 62143387 62144115 -114830025 + L1PA3 LINE L1 5422 6152 -3 33152 60 4 6 chrX 62144115 62145413 -114828727 + L1PA3 LINE L1 3232 4531 -1615 286 287 100 7 chrX 62145736 62145886 -114828254 - L1MA9 LINE L1 -38 6274 6111 * 6430 216 7 4 chrX 62145885 62147712 -114826428 + L1PA15-16 LINE L1 1 1498 -5351 1096 186 30 4 chrX 62147812 62148049 -114826091 - L1M2 LINE L1 -4285 2564 2322 18082 159 42 42 chrX 62148049 62150084 -114824056 + L1P LINE L1 13 2047 -4099 180 0 0 0 chrX 62150084 62150104 -114824036 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 18082 159 42 42 chrX 62150104 62150689 -114823451 + L1P LINE L1 2047 2631 -3515 2169 129 0 0 chrX 62150689 62150983 -114823157 - AluSg SINE Alu -16 294 1 18082 159 42 42 chrX 62150983 62152352 -114821788 + L1P LINE L1 2630 4003 -2143 478 245 10 0 chrX 62152352 62152454 -114821686 + AluJb SINE Alu 204 306 -6 275 273 133 16 chrX 62152689 62152817 -114821323 + MIR3 SINE MIR 3 145 -63 1334 277 46 25 chrX 62153862 62154378 -114819762 + L2 LINE L2 2587 3111 -202 2313 139 13 11 chrX 62154378 62154752 -114819388 + THE1C LTR MaLR 1 375 0 9576 120 31 60 chrX 62154753 62156378 -114817762 + THE1C-int LTR MaLR 2 1580 0 2883 91 11 11 chrX 62156378 62156753 -114817387 + THE1C LTR MaLR 1 375 0 552 249 81 35 chrX 62156753 62156950 -114817190 + L2 LINE L2 3107 3312 -1 429 325 85 27 chrX 62157028 62157216 -114816924 - MIR3 SINE MIR -9 199 1 280 336 51 36 chrX 62157880 62158017 -114816123 - L2 LINE L2 -9 3263 3125 248 347 83 65 chrX 62158137 62158353 -114815787 - L2 LINE L2 -183 3089 2870 497 312 19 0 chrX 62158391 62158545 -114815595 - MER117 DNA MER1_type -40 157 1 265 360 8 16 chrX 62158756 62158881 -114815259 - L2 LINE L2 -607 2707 2584 182 388 8 23 chrX 62159654 62159783 -114814357 - MIR SINE MIR -102 160 34 395 343 41 0 chrX 62159883 62160029 -114814111 - L2 LINE L2 -9 3263 3112 182 333 0 0 chrX 62160572 62160623 -114813517 - L2 LINE L2 -11 3261 3211 555 250 103 26 chrX 62160857 62161089 -114813051 - MLT1K LTR MaLR -4 584 335 631 284 33 6 chrX 62161516 62161699 -114812441 + MIR SINE MIR 18 205 -57 663 185 0 68 chrX 62161708 62161854 -114812286 - MER119 DNA MER1_type 0 583 448 549 242 75 8 chrX 62161846 62161966 -114812174 - MER119 DNA MER1_type -449 134 7 * 1904 162 21 29 chrX 62164280 62164620 -114809520 - MER58B DNA MER1_type -4 337 1 317 310 113 74 chrX 62164620 62164849 -114809291 + L3 LINE CR1 1306 1543 -34 332 258 80 70 chrX 62167217 62167360 -114806780 + MIR SINE MIR 12 154 -62 202 49 24 49 chrX 62167600 62167641 -114806499 + (TTA)n Simple_repeat Simple_repeat 3 42 0 730 30 0 0 chrX 62167641 62167733 -114806407 + L1PA4 LINE L1 5903 5994 -169 24 0 0 0 chrX 62168269 62168293 -114805847 + AT_rich Low_complexity Low_complexity 1 24 0 259 309 31 68 chrX 62168356 62168518 -114805622 + L3 LINE CR1 373 528 -1049 608 192 33 0 chrX 62168545 62168665 -114805475 - MIR SINE MIR -16 246 123 1207 290 266 17 chrX 62168953 62169671 -114804469 + L3 LINE CR1 588 1484 -93 1058 137 60 16 chrX 62169761 62169943 -114804197 - AluJo SINE Alu -15 297 108 658 260 89 0 chrX 62170042 62170211 -114803929 - MIR SINE MIR -10 252 69 211 260 177 10 chrX 62170515 62170611 -114803529 - MIR3 SINE MIR -4 204 93 338 294 132 15 chrX 62170805 62170941 -114803199 + MIR SINE MIR 2 153 -109 267 325 121 13 chrX 62170930 62171087 -114803053 - L2 LINE L2 -944 2370 2197 * 2434 155 8 2 chrX 62171094 62171495 -114802645 - L1MA4 LINE L1 -16 6284 5882 1167 159 21 0 chrX 62171495 62171684 -114802456 - MER82 DNA MER2_type -460 193 1 423 304 80 26 chrX 62171711 62171844 -114802296 + L1ME4a LINE L1 5264 5388 -733 2273 104 0 3 chrX 62171844 62172151 -114801989 + AluSx SINE Alu 3 308 -4 423 304 80 26 chrX 62172151 62172330 -114801810 + L1ME4a LINE L1 5388 5593 -528 328 238 100 33 chrX 62172351 62172561 -114801579 + L1ME4a LINE L1 5657 5880 -241 199 329 12 24 chrX 62172938 62173023 -114801117 - L2 LINE L2 -212 3060 2977 250 259 19 0 chrX 62174762 62174816 -114799324 + L2 LINE L2 3205 3259 -13 266 309 64 18 chrX 62174827 62174937 -114799203 - L2 LINE L2 -20 3252 3138 299 319 69 23 chrX 62175093 62175309 -114798831 - L2 LINE L2 -1524 1790 1565 496 263 45 0 chrX 62176536 62176669 -114797471 - MIR SINE MIR -1 261 123 196 245 20 0 chrX 62177862 62177911 -114796229 + MIR3 SINE MIR 151 200 -8 5608 105 26 17 chrX 62179567 62180846 -114793294 - L1PA8A LINE L1 -14 6432 4952 11595 131 17 41 chrX 62180848 62183069 -114791071 + L1PA8 LINE L1 6 2212 -4249 5876 109 95 106 chrX 62183069 62184641 -114789499 + pTR5 LTR ERV1 743 2438 0 7658 138 8 0 chrX 62184644 62185859 -114788281 + L1PA8 LINE L1 2209 3433 -3028 9306 129 11 0 chrX 62185859 62188018 -114786122 + L1PA8 LINE L1 4311 6487 0 20150 164 14 15 chrX 62188018 62188687 -114785453 - L1PA8A LINE L1 -1500 4961 4293 2327 85 0 3 chrX 62188687 62188981 -114785159 - AluY SINE Alu -18 293 1 20150 164 14 15 chrX 62188981 62193206 -114780934 - L1PA8A LINE L1 -2168 4293 9 295 326 0 16 chrX 62193644 62193773 -114780367 + GA-rich Low_complexity Low_complexity 2 128 0 590 192 20 1 chrX 62193782 62193916 -114780224 + L1MD3 LINE L1 6839 6997 -809 * 3556 167 25 36 chrX 62193907 62194624 -114779516 + L1MC3 LINE L1 7077 7785 0 21 0 0 0 chrX 62194674 62194695 -114779445 + AT_rich Low_complexity Low_complexity 1 21 0 3328 55 0 0 chrX 62194729 62195112 -114779028 - L1PA3 LINE L1 -3 6152 5770 186 43 0 0 chrX 62195494 62195517 -114778623 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 43781 49 0 1 chrX 62195518 62201664 -114772476 - L1PA3 LINE L1 -8 6147 8 351 260 169 30 chrX 62201716 62202184 -114771956 + L1M4c LINE L1 673 3421 -2961 325 345 27 9 chrX 62203382 62203492 -114770648 + MIR3 SINE MIR 11 122 -86 524 205 0 0 chrX 62203761 62203844 -114770296 - FLAM_A SINE Alu -59 83 1 460 291 6 74 chrX 62204301 62204476 -114769664 + MIR3 SINE MIR 45 207 -1 22 35 0 0 chrX 62205493 62205522 -114768618 + AT_rich Low_complexity Low_complexity 1 29 0 417 277 54 0 chrX 62207078 62207190 -114766950 - MIR3 SINE MIR -39 169 52 292 340 5 113 chrX 62210660 62210872 -114763268 + L2 LINE L2 3014 3202 -70 218 301 117 0 chrX 62210900 62211003 -114763137 - L2 LINE L2 0 3313 3199 815 266 103 0 chrX 62213958 62214172 -114759968 - MIR SINE MIR -3 259 24 2293 116 9 29 chrX 62214268 62214612 -114759528 + MER1B DNA MER1_type 1 337 0 188 374 134 16 chrX 62215011 62215198 -114758942 - L2 LINE L2 -463 2851 2643 1809 208 9 7 chrX 62216430 62216854 -114757286 - L1PB3 LINE L1 -1198 4948 4524 * 5308 149 30 3 chrX 62216850 62218012 -114756128 + L1PB3 LINE L1 4962 6147 -7 29 0 0 0 chrX 62218012 62218041 -114756099 + AT_rich Low_complexity Low_complexity 1 29 0 216 406 7 14 chrX 62218202 62218340 -114755800 + L2 LINE L2 2916 3052 -220 3388 216 55 34 chrX 62218817 62220396 -114753744 + L1MCb LINE L1 -134 1484 -4850 1177 149 47 40 chrX 62220395 62220693 -114753447 + L1MCb LINE L1 1691 1966 -4460 * 2133 124 0 10 chrX 62220727 62221018 -114753122 + AluSg SINE Alu 1 288 -22 21 0 0 0 chrX 62221018 62221039 -114753101 + AT_rich Low_complexity Low_complexity 1 21 0 1399 192 50 8 chrX 62221048 62221513 -114752627 + L1MCb LINE L1 2127 2479 -3947 7766 243 65 37 chrX 62221524 62223938 -114750202 + L1PA15 LINE L1 1 2491 -4306 234 0 0 0 chrX 62223938 62223964 -114750176 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 34208 81 44 3 chrX 62223973 62229869 -114744271 - L1PA5 LINE L1 -6 6148 1 2663 250 24 5 chrX 62229871 62230628 -114743512 + L1PA15 LINE L1 2483 3253 -3544 * 4784 222 24 48 chrX 62230619 62231404 -114742736 + L1PA15 LINE L1 3596 4331 -2466 480 18 0 0 chrX 62231404 62231461 -114742679 + (CA)n Simple_repeat Simple_repeat 2 58 0 4784 222 24 48 chrX 62231461 62232141 -114741999 + L1PA15 LINE L1 4331 5026 -1771 17445 32 1 2 chrX 62232142 62234361 -114739779 - L1PA3 LINE L1 -1130 5016 2801 7479 35 1 0 chrX 62234361 62235501 -114738639 + L1PA3 LINE L1 5015 6155 0 5375 130 19 12 chrX 62235517 62237280 -114736860 + L1PA15 LINE L1 5033 6811 -5 703 281 41 22 chrX 62237287 62237654 -114736486 + L1M4 LINE L1 2315 2688 -3458 11511 115 12 2 chrX 62237654 62240189 -114733951 - L1PA7 LINE L1 -1 6153 3580 11396 52 2 1 chrX 62240190 62241819 -114732321 + L1P2 LINE L1 3889 5519 -636 191 287 96 26 chrX 62241820 62241935 -114732205 + L2 LINE L2 3138 3260 -12 5199 161 21 27 chrX 62242089 62243241 -114730899 + L1MA4 LINE L1 4175 5319 -827 2527 67 0 10 chrX 62243242 62243591 -114730549 + AluY SINE Alu 1 346 0 1771 191 0 3 chrX 62243620 62243913 -114730227 + AluSx SINE Alu 1 292 -20 3577 157 79 29 chrX 62243919 62243955 -114730185 + L1MA4 LINE L1 5315 5348 -952 2015 133 0 22 chrX 62243955 62244270 -114729870 - AluY SINE Alu -3 308 1 3577 157 79 29 chrX 62244270 62245297 -114728843 + L1MA4 LINE L1 5348 6296 -4 216 318 112 9 chrX 62245473 62245580 -114728560 - L3 LINE CR1 -990 587 470 27 29 0 0 chrX 62245706 62245740 -114728400 + AT_rich Low_complexity Low_complexity 1 34 0 462 154 15 7 chrX 62245753 62245888 -114728252 - L1MA4 LINE L1 -298 6002 5817 * 1018 203 47 11 chrX 62245881 62246157 -114727983 - L1MA8 LINE L1 -25 6266 5981 32 26 0 0 chrX 62246202 62246241 -114727899 + AT_rich Low_complexity Low_complexity 1 39 0 399 378 42 46 chrX 62246498 62246760 -114727380 - L2 LINE L2 -339 2975 2715 513 308 63 0 chrX 62246987 62247146 -114726994 - MIR SINE MIR -87 175 7 381 306 93 38 chrX 62247178 62247361 -114726779 - MIR3 SINE MIR -15 193 1 301 325 54 18 chrX 62248024 62248190 -114725950 - MER5B DNA MER1_type -6 172 1 878 220 16 5 chrX 62248790 62248976 -114725164 + MER5A DNA MER1_type 1 188 -1 743 247 158 29 chrX 62249270 62249586 -114724554 + LTR18A LTR ERVL 1 357 0 37888 146 10 8 chrX 62249593 62255623 -114718517 + HERVL18 LTR ERVL 2 6045 -2 708 269 146 22 chrX 62255626 62255942 -114718198 + LTR18A LTR ERVL 1 355 -2 578 288 57 0 chrX 62256036 62256213 -114717927 - MIR SINE MIR -61 201 15 2068 193 17 17 chrX 62256249 62256664 -114717476 + MSTB1 LTR MaLR 18 432 0 285 339 32 8 chrX 62257570 62257694 -114716446 - L2 LINE L2 -291 2981 2855 1320 209 51 79 chrX 62258255 62258824 -114715316 - L1ME LINE L1 -377 5787 5237 887 315 25 47 chrX 62258826 62259296 -114714844 - LTR16B LTR ERVL -2 462 3 6385 159 52 7 chrX 62259674 62262047 -114712093 + L1MA1 LINE L1 3816 6302 0 * 11983 177 55 16 chrX 62262045 62265981 -114708159 + L1MA2 LINE L1 3332 7425 -298 1839 286 49 27 chrX 62266005 62266177 -114707963 + L2 LINE L2 1533 1700 -1614 2111 142 0 0 chrX 62266177 62266473 -114707667 + AluSx SINE Alu 1 296 -16 1839 286 49 27 chrX 62266473 62267030 -114707110 + L2 LINE L2 1700 2278 -1036 222 275 264 0 chrX 62267234 62267325 -114706815 - MER5B DNA MER1_type -1 177 63 270 286 143 25 chrX 62267549 62267668 -114706472 + L2 LINE L2 3136 3268 -4 377 299 122 9 chrX 62267759 62267973 -114706167 + L2 LINE L2 2298 2535 -779 3763 199 41 11 chrX 62268230 62269319 -114704821 - L1MB5 LINE L1 -8 7126 5997 1463 219 51 66 chrX 62269319 62269790 -114704350 + MLT2C2 LTR ERVL 1 464 0 3763 199 41 11 chrX 62269790 62269943 -114704197 - L1MB5 LINE L1 -1137 5997 5850 7002 31 12 0 chrX 62269984 62270862 -114703278 - L1PA3 LINE L1 -3 6152 5264 4920 256 30 15 chrX 62270859 62272660 -114701480 - L1MB5 LINE L1 -1255 5851 4023 * 1408 153 29 0 chrX 62272688 62272963 -114701177 - L1MA8 LINE L1 -4 6287 6005 3528 155 50 0 chrX 62273021 62273679 -114700461 - L1MA4A LINE L1 -6 6297 5607 576 222 56 25 chrX 62273703 62273901 -114700239 - L1MB5 LINE L1 -4845 2261 2058 * 1854 183 14 154 chrX 62273898 62274625 -114699515 - L1MB5 LINE L1 -6258 772 148 318 179 90 0 chrX 62274655 62274722 -114699418 - L1MB5 LINE L1 -6807 223 151 1546 145 0 4 chrX 62274723 62274957 -114699183 - AluSq SINE Alu 0 313 81 7712 35 0 1 chrX 62274957 62275855 -114698285 - MER11D LTR ERVK 0 897 1 653 73 0 0 chrX 62275855 62275937 -114698203 - AluSq SINE Alu -226 86 5 753 139 0 78 chrX 62275941 62276107 -114698033 - L1MB5 LINE L1 -6872 158 6 2246 240 68 4 chrX 62276125 62276717 -114697423 - L1M4 LINE L1 -3113 3531 2879 440 72 14 0 chrX 62276717 62276786 -114697354 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 2246 240 68 4 chrX 62276786 62276946 -114697194 - L1M4 LINE L1 -3765 2879 2731 614 126 45 0 chrX 62276948 62277059 -114697081 + L1MA9 LINE L1 6145 6260 -52 * 941 172 33 37 chrX 62277057 62277272 -114696868 - L1M3 LINE L1 -491 5680 5467 204 97 0 0 chrX 62277284 62277315 -114696825 + (CATA)n Simple_repeat Simple_repeat 2 32 0 248 0 0 0 chrX 62277319 62277348 -114696792 + MLT2B1 LTR ERVL 484 512 -8 369 213 29 7 chrX 62277352 62277488 -114696652 + (TA)n Simple_repeat Simple_repeat 1 139 0 1030 233 100 56 chrX 62277501 62277931 -114696209 - MLT2B1 LTR ERVL -68 452 4 243 61 0 0 chrX 62277932 62277965 -114696175 - L1M3 LINE L1 -698 5473 5441 * 826 177 60 110 chrX 62277962 62278398 -114695742 - L1M4 LINE L1 -3987 2659 2246 889 200 33 17 chrX 62278412 62278592 -114695548 + AluJb SINE Alu 21 203 -109 2698 254 67 42 chrX 62278638 62279067 -114695073 - L1M4 LINE L1 -4511 2135 1718 1731 175 0 24 chrX 62279067 62279364 -114694776 + AluJo SINE Alu 1 290 -22 2698 254 67 42 chrX 62279364 62279389 -114694751 - L1M4 LINE L1 -4928 1718 1695 8345 136 9 2 chrX 62279389 62280666 -114693474 - HSMAR1 DNA Mariner 0 1287 1 2698 254 67 42 chrX 62280666 62281804 -114692336 - L1M4 LINE L1 -4951 1695 495 1442 233 54 50 chrX 62281804 62282268 -114691872 + MER31B LTR ERV1 1 466 0 2698 254 67 42 chrX 62282268 62282763 -114691377 - L1M4 LINE L1 -6151 495 14 2148 114 3 3 chrX 62283091 62283380 -114690760 - AluSp SINE Alu -24 289 1 1065 241 20 53 chrX 62283903 62284274 -114689866 - MLT2C1 LTR ERVL -36 428 1 188 274 107 48 chrX 62284515 62284599 -114689541 + L3 LINE CR1 1293 1381 -196 1806 191 11 5 chrX 62284845 62285227 -114688913 - L1PA16 LINE L1 -1 6868 6485 305 188 0 10 chrX 62285228 62285324 -114688816 + (TA)n Simple_repeat Simple_repeat 2 96 0 369 0 0 0 chrX 62285326 62285367 -114688773 + (TC)n Simple_repeat Simple_repeat 2 42 0 255 61 0 0 chrX 62285366 62285399 -114688741 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 2628 123 2 7 chrX 62285401 62285825 -114688315 - L1PA16 LINE L1 -386 6483 6062 257 0 0 29 chrX 62285825 62285859 -114688281 + (TTA)n Simple_repeat Simple_repeat 2 34 0 11660 224 15 25 chrX 62285869 62289731 -114684409 - L1PA16 LINE L1 -860 5989 2170 1907 122 66 9 chrX 62289731 62290051 -114684089 + L1PA13 LINE L1 5818 6155 -8 11660 224 15 25 chrX 62290051 62290339 -114683801 - L1PA16 LINE L1 -4679 2170 1881 1308 171 104 19 chrX 62290339 62290648 -114683492 - MSTA LTR MaLR 0 428 94 1411 198 48 45 chrX 62290648 62290696 -114683444 - THE1C LTR MaLR 0 375 329 2338 152 3 8 chrX 62290696 62291071 -114683069 - THE1C LTR MaLR 0 375 3 9328 129 35 43 chrX 62291073 62292665 -114681475 - THE1C-int LTR MaLR 0 1580 1 2292 139 8 5 chrX 62292665 62293039 -114681101 - THE1C LTR MaLR 0 375 1 1411 198 48 45 chrX 62293039 62293360 -114680780 - THE1C LTR MaLR -45 330 1 305 111 0 37 chrX 62293365 62293419 -114680721 - MSTA-int LTR MaLR -6 1645 1594 39073 46 25 2 chrX 62293429 62296167 -114677973 + L1PA3 LINE L1 13 2688 -3467 8468 63 4 1 chrX 62296167 62297235 -114676905 + MER11C LTR ERVK 1 1071 0 39073 46 25 2 chrX 62297235 62300500 -114673640 + L1PA3 LINE L1 2688 6155 0 211 146 0 62 chrX 62300503 62300521 -114673619 + (A)n Simple_repeat Simple_repeat 1 19 -26 7654 28 0 0 chrX 62300521 62301923 -114672217 + L1PA3 LINE L1 4745 6151 -4 211 146 0 62 chrX 62301923 62301952 -114672188 + (A)n Simple_repeat Simple_repeat 19 45 0 4830 195 29 6 chrX 62301952 62302909 -114671231 - MSTA-int LTR MaLR -44 1607 629 803 129 27 0 chrX 62302906 62303053 -114671087 - MSTA-int LTR MaLR -1500 151 1 * 2372 137 70 7 chrX 62303053 62303456 -114670684 - MSTA LTR MaLR 0 428 1 6788 148 6 153 chrX 62303456 62305665 -114668475 - L1PA16 LINE L1 -4964 1885 1 311 280 100 7 chrX 62305664 62305814 -114668326 + L1MA9 LINE L1 6111 6274 -38 * 2010 143 3 0 chrX 62306704 62306990 -114667150 + AluSx SINE Alu 1 287 -25 198 0 0 0 chrX 62307011 62307033 -114667107 + (TAAAAA)n Simple_repeat Simple_repeat 4 25 0 258 324 108 0 chrX 62307159 62307270 -114666870 - MIR SINE MIR 0 262 140 2006 148 32 51 chrX 62307421 62307461 -114666679 - THE1B LTR MaLR 0 364 325 1953 127 7 23 chrX 62307461 62307760 -114666380 + AluSx SINE Alu 1 294 -18 2006 148 32 51 chrX 62307760 62308090 -114666050 - THE1B LTR MaLR -39 325 1 10063 116 31 38 chrX 62308090 62309680 -114664460 - THE1B-int LTR MaLR 0 1580 1 2285 124 34 22 chrX 62309683 62310039 -114664101 - THE1B LTR MaLR -3 361 2 1077 211 59 13 chrX 62310277 62310711 -114663429 + L1MDa LINE L1 2112 2586 -3954 285 245 122 0 chrX 62310711 62310850 -114663290 + L1M4 LINE L1 5 160 -6382 2786 223 49 29 chrX 62311287 62311495 -114662645 + L1M4 LINE L1 612 814 -5832 2112 122 0 3 chrX 62311495 62311802 -114662338 - AluSg SINE Alu 0 306 1 2786 223 49 29 chrX 62311802 62312760 -114661380 + L1M4 LINE L1 814 1852 -4794 1202 225 50 30 chrX 62312780 62313118 -114661022 + MLT1B LTR MaLR 1 345 -45 261 219 0 0 chrX 62313124 62313206 -114660934 + L1M4c LINE L1 981 1062 -5322 1935 236 34 0 chrX 62313302 62313832 -114660308 + MLT1B-int LTR MaLR 21 669 -702 325 262 12 0 chrX 62313955 62314039 -114660101 + MLT1B-int LTR MaLR 680 764 -971 2057 213 36 17 chrX 62314161 62314624 -114659516 + MLT1B-int LTR MaLR 950 1651 0 1928 168 50 13 chrX 62314624 62315000 -114659140 + MLT1B LTR MaLR 1 390 0 268 197 0 30 chrX 62315018 62315084 -114659056 + L1M4 LINE L1 5217 5280 -866 315 311 139 8 chrX 62315416 62315538 -114658602 - MIR3 SINE MIR -62 146 9 234 0 0 0 chrX 62315999 62316025 -114658115 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 384 22 0 0 chrX 62316024 62316069 -114658071 + (GA)n Simple_repeat Simple_repeat 2 46 0 550 326 52 0 chrX 62316069 62316241 -114657899 - MIR SINE MIR -74 188 8 282 159 0 0 chrX 62318036 62318105 -114656035 + GA-rich Low_complexity Low_complexity 2 70 0 592 312 111 28 chrX 62318117 62318370 -114655770 + L3 LINE CR1 829 1102 -475 228 35 0 0 chrX 62318432 62318461 -114655679 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 378 0 0 0 chrX 62319282 62319324 -114654816 + (TA)n Simple_repeat Simple_repeat 2 43 0 3221 236 45 29 chrX 62319639 62320727 -114653413 + L1MDb LINE L1 480 1605 -4801 14983 150 22 16 chrX 62321427 62322962 -114651178 + L1PA8 LINE L1 3320 4844 -2747 2581 14 0 0 chrX 62322962 62323243 -114650897 + AluYb8 SINE Alu 38 318 0 14983 150 22 16 chrX 62323243 62325938 -114648202 + L1PA8 LINE L1 4844 7585 -6 4872 196 19 9 chrX 62325935 62326847 -114647293 + L1 LINE L1 3047 3974 -2172 * 2841 10 0 0 chrX 62326847 62327155 -114646985 + AluYb8 SINE Alu 1 308 -10 4872 196 19 9 chrX 62327155 62327377 -114646763 + L1 LINE L1 3974 4192 -1954 1105 223 5 0 chrX 62327381 62327605 -114646535 + L1PA14 LINE L1 6 230 -7351 * 9084 189 18 10 chrX 62327603 62330781 -114643359 + L1PA14 LINE L1 1500 4709 -2875 1284 170 158 24 chrX 62330791 62331120 -114643020 - THE1C LTR MaLR -2 373 1 8214 164 17 47 chrX 62331124 62332748 -114641392 - THE1C-int LTR MaLR -4 1576 3 232 163 0 41 chrX 62332750 62332799 -114641341 - THE1C LTR MaLR 0 428 382 12413 143 9 19 chrX 62332799 62335002 -114639138 + L1PA6 LINE L1 9 2189 -3957 40356 56 2 1 chrX 62335003 62341150 -114632990 + L1PA4 LINE L1 3 6154 -1 21004 87 9 3 chrX 62341146 62345096 -114629044 + L1PA6 LINE L1 2176 6143 -11 * 5102 82 0 0 chrX 62345186 62345865 -114628275 + L1PA6 LINE L1 5476 6154 0 1047 194 102 48 chrX 62345868 62346162 -114627978 - THE1C LTR MaLR -37 338 29 9029 171 16 16 chrX 62346163 62349007 -114625133 + L1PA14 LINE L1 4719 7560 -39 16334 90 7 5 chrX 62349008 62350775 -114623365 + L1PA4 LINE L1 1 1774 -4372 2686 33 0 0 chrX 62350775 62351080 -114623060 + AluY SINE Alu 1 305 -6 16334 90 7 5 chrX 62351080 62351669 -114622471 + L1PA4 LINE L1 1774 2361 -3785 1692 52 0 0 chrX 62351856 62352088 -114622052 + L1PA4 LINE L1 2352 2583 -3563 11414 39 6 1 chrX 62352088 62354245 -114619895 + L1PA4 LINE L1 3990 6151 -4 2684 56 35 16 chrX 62354245 62354614 -114619526 + L1PA4 LINE L1 5771 6152 -3 5977 161 10 7 chrX 62354661 62356590 -114617550 + L1MA3 LINE L1 4182 6122 -183 1734 166 0 0 chrX 62356590 62356855 -114617285 + AluSx SINE Alu 36 300 -12 5977 161 10 7 chrX 62356855 62357040 -114617100 + L1MA3 LINE L1 6122 6305 0 32 0 0 0 chrX 62357040 62357072 -114617068 + AT_rich Low_complexity Low_complexity 1 32 0 267 97 32 16 chrX 62357341 62357403 -114616737 + (TA)n Simple_repeat Simple_repeat 1 63 0 481 370 77 35 chrX 62357914 62358290 -114615850 - L2 LINE L2 -339 2975 2584 6399 221 5 3 chrX 62358821 62360521 -114613619 + L1PA16 LINE L1 3 1369 -5480 1148 190 38 0 chrX 62360526 62360829 -114613311 + L1 LINE L1 3705 4027 -2119 4970 249 42 14 chrX 62361030 62362707 -114611433 + L1PA16 LINE L1 1325 3125 -3724 2059 127 14 7 chrX 62362707 62362999 -114611141 + AluSx SINE Alu 1 294 -18 4970 249 42 14 chrX 62362999 62363939 -114610201 + L1PA16 LINE L1 3125 4037 -2812 5603 95 9 17 chrX 62363970 62364792 -114609348 - L1PA10 LINE L1 -5 6163 5347 3560 81 2 0 chrX 62364792 62365259 -114608881 + L1PA6 LINE L1 5684 6151 -3 5603 95 9 17 chrX 62365259 62365301 -114608839 - L1PA10 LINE L1 -821 5347 5306 7997 197 10 13 chrX 62365304 62365856 -114608284 + L1PA16 LINE L1 4040 4592 -2277 2158 121 0 16 chrX 62365856 62366170 -114607970 + AluSc SINE Alu 1 309 0 7997 197 10 13 chrX 62366170 62368374 -114605766 + L1PA16 LINE L1 4592 6792 -77 21 0 0 0 chrX 62368421 62368442 -114605698 + AT_rich Low_complexity Low_complexity 1 21 0 1296 50 0 0 chrX 62369497 62369657 -114604483 + L1PA3 LINE L1 5993 6152 -3 2222 75 58 0 chrX 62370577 62370870 -114603270 + AluY SINE Alu 1 310 -1 253 304 0 0 chrX 62372760 62372829 -114601311 - MIR SINE MIR -68 140 72 421 331 7 0 chrX 62373065 62373201 -114600939 - MIR SINE MIR -27 235 99 259 318 200 24 chrX 62374706 62375086 -114599054 - L2 LINE L2 -643 2671 2225 2131 117 0 3 chrX 62375722 62376020 -114598120 - AluY SINE Alu -14 297 1 22 56 0 0 chrX 62376043 62376079 -114598061 + AT_rich Low_complexity Low_complexity 1 36 0 704 272 12 0 chrX 62376139 62376308 -114597832 - MIR3 SINE MIR -4 204 34 21 0 0 0 chrX 62376711 62376732 -114597408 + AT_rich Low_complexity Low_complexity 1 21 0 40706 54 2 2 chrX 62377156 62383299 -114590841 + L1PA3 LINE L1 9 6152 -3 778 200 13 20 chrX 62383332 62383482 -114590658 + FAM SINE Alu 1 149 -36 1211 191 65 89 chrX 62384322 62384694 -114589446 - MLT1B LTR MaLR -27 363 1 316 258 84 60 chrX 62384695 62384829 -114589311 - MIR SINE MIR -81 127 18 1839 251 60 25 chrX 62384843 62385216 -114588924 - L1M4 LINE L1 -2502 3644 3285 2305 117 0 0 chrX 62385216 62385525 -114588615 - AluSg SINE Alu -1 309 1 1839 251 60 25 chrX 62385525 62385904 -114588236 - L1M4 LINE L1 -2861 3285 2866 1017 39 0 0 chrX 62385901 62386030 -114588110 - L1P3 LINE L1 -549 5605 5477 * 3799 72 6 0 chrX 62386030 62386526 -114587614 + L1PA7 LINE L1 5647 6146 -8 318 255 28 7 chrX 62386527 62386668 -114587472 - L1M4 LINE L1 -3266 2880 2737 16105 152 14 94 chrX 62386722 62390605 -114583535 + L1P LINE L1 12 3583 -2563 5216 47 0 0 chrX 62390607 62391240 -114582900 - L1PA4 LINE L1 0 6155 5523 378 216 0 0 chrX 62391240 62391328 -114582812 + L1MA5 LINE L1 3851 3938 -2208 17297 189 22 11 chrX 62391331 62393683 -114580457 + L1MA1 LINE L1 13 2339 -5382 1549 79 9 5 chrX 62393683 62393897 -114580243 + L1PA7 LINE L1 5930 6144 -10 17297 189 22 11 chrX 62393897 62395390 -114578750 + L1MA1 LINE L1 2339 3815 -3906 2151 176 15 0 chrX 62395390 62395787 -114578353 + MER57A LTR ERV1 1 403 0 17297 189 22 11 chrX 62395787 62399565 -114574575 + L1MA1 LINE L1 3815 7721 0 5980 184 34 21 chrX 62399591 62401188 -114572952 + L1MA5 LINE L1 3942 5544 -743 1841 198 40 12 chrX 62401204 62401403 -114572737 - MSTB LTR MaLR -16 410 218 2182 102 0 3 chrX 62401403 62401696 -114572444 - AluSc SINE Alu -17 292 1 1841 198 40 12 chrX 62401696 62401895 -114572245 - MSTB LTR MaLR -208 218 1 1416 192 83 0 chrX 62401895 62402208 -114571932 + L1MA5 LINE L1 5541 5879 -421 2908 100 5 2 chrX 62402214 62402635 -114571505 + L1PA13 LINE L1 5742 6163 0 1972 174 15 15 chrX 62402635 62403038 -114571102 + L1MA5 LINE L1 5894 6300 0 325 188 38 12 chrX 62403040 62403120 -114571020 + Tigger1 DNA MER2_type 2333 2414 -4 1880 180 5 40 chrX 62403675 62404053 -114570087 - MER47A DNA MER2_type 0 366 2 235 310 123 28 chrX 62404445 62404590 -114569550 + MIR SINE MIR 1 168 -40 318 253 95 0 chrX 62405179 62405274 -114568866 - MLT1J2 LTR MaLR 0 450 347 887 262 42 57 chrX 62405531 62405706 -114568434 - HAL1 LINE L1 -683 1824 1655 2754 177 7 0 chrX 62405706 62406170 -114567970 - MLT1C LTR MaLR 0 467 1 887 262 42 57 chrX 62406170 62406326 -114567814 - HAL1 LINE L1 -852 1655 1498 1190 249 42 34 chrX 62406553 62407031 -114567109 - HAL1 LINE L1 -1012 1495 1014 634 303 114 42 chrX 62407190 62407550 -114566590 - HAL1 LINE L1 -1798 709 324 933 242 132 25 chrX 62407604 62407922 -114566218 + MLT1I LTR MaLR 54 405 -4 521 327 39 29 chrX 62407966 62408247 -114565893 - HAL1 LINE L1 -2222 285 2 377 278 0 0 chrX 62409271 62409361 -114564779 + MIR SINE MIR 33 122 -86 4654 38 0 0 chrX 62409545 62410104 -114564036 - L1PA4 LINE L1 -1 6154 5596 525 403 80 9 chrX 62410152 62410703 -114563437 + L3 LINE CR1 986 1575 -2 2053 126 0 7 chrX 62411045 62411339 -114562801 + AluSg SINE Alu 1 292 -18 904 189 60 36 chrX 62411419 62411511 -114562629 - L1MA4 LINE L1 -5 6295 6207 2090 142 80 0 chrX 62411511 62411848 -114562292 + THE1B LTR MaLR 1 364 0 904 189 60 36 chrX 62411848 62412003 -114562137 - L1MA4 LINE L1 -93 6207 6042 361 319 6 19 chrX 62412860 62413020 -114561120 + T-rich Low_complexity Low_complexity 2 159 0 180 405 16 32 chrX 62413486 62413612 -114560528 - MIR SINE MIR -68 140 17 2151 80 25 3 chrX 62414295 62414419 -114559721 + AluY SINE Alu 1 121 -190 201 108 0 0 chrX 62414419 62414456 -114559684 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 2151 80 25 3 chrX 62414456 62414617 -114559523 + AluY SINE Alu 121 292 -19 4462 133 7 7 chrX 62414617 62415352 -114558788 - L1PA14 LINE L1 -14 7585 6851 41031 48 22 2 chrX 62415374 62421402 -114552738 - L1PA2 LINE L1 -1 6154 1 11444 208 16 4 chrX 62421403 62424008 -114550132 - L1PA14 LINE L1 -740 6866 4233 597 146 0 0 chrX 62424007 62424110 -114550030 + L1PB1 LINE L1 2632 2734 -4129 * 12021 193 7 45 chrX 62424122 62425486 -114548654 + L1PB1 LINE L1 2796 4210 -2657 1767 106 117 18 chrX 62425486 62425760 -114548380 + AluSg SINE Alu 8 308 -2 12021 193 7 45 chrX 62425760 62428633 -114545507 + L1PB1 LINE L1 4210 6865 -2 1641 255 6 3 chrX 62428651 62428996 -114545144 - L1PA14 LINE L1 -6270 1311 966 1750 161 48 0 chrX 62429589 62429880 -114544260 - AluJb SINE Alu -7 305 1 260 53 26 0 chrX 62429908 62429946 -114544194 + (TTTTTG)n Simple_repeat Simple_repeat 3 41 0 268 174 72 0 chrX 62430049 62430118 -114544022 - L1PA8 LINE L1 0 6172 6099 331 279 116 7 chrX 62431397 62431544 -114542596 + MIR SINE MIR 85 247 -15 1120 232 27 13 chrX 62431550 62431853 -114542287 + L1MB2 LINE L1 5832 6140 -31 2236 302 68 27 chrX 62431862 62432603 -114541537 + L1PA13 LINE L1 1 771 -6016 819 287 40 34 chrX 62432758 62433086 -114541054 + L1PA13 LINE L1 1289 1618 -5169 14879 191 46 24 chrX 62433117 62436068 -114538072 + L1M1 LINE L1 66 3085 -4480 2085 105 20 10 chrX 62436068 62436363 -114537777 + AluSg SINE Alu 11 308 -2 14879 191 46 24 chrX 62436363 62436451 -114537689 + L1M1 LINE L1 3085 3170 -4395 979 194 10 0 chrX 62436456 62436652 -114537488 + L1PB1 LINE L1 3 200 -6663 1454 204 34 13 chrX 62436652 62442468 -114531672 + L1PB1 LINE L1 634 6866 -1 7956 210 28 14 chrX 62442476 62444798 -114529342 + L1M1 LINE L1 3143 5497 -2068 3267 265 31 1 chrX 62444811 62445711 -114528429 + L1MA4A LINE L1 1012 1986 -5223 * 6334 36 0 0 chrX 62445710 62446483 -114527657 - L1P LINE L1 -4030 2116 1344 490 191 0 0 chrX 62446483 62446572 -114527568 - MLT1B LTR MaLR -301 89 1 205 229 42 0 chrX 62446602 62446650 -114527490 - L2 LINE L2 -19 3253 3204 488 310 99 16 chrX 62446852 62447094 -114527046 - MIR SINE MIR 0 262 1 2893 211 40 15 chrX 62447236 62447859 -114526281 + L1MA4A LINE L1 1970 2576 -4632 2021 149 3 0 chrX 62447859 62448168 -114525972 + AluSp SINE Alu 4 313 0 2893 211 40 15 chrX 62448168 62449007 -114525133 + L1MA4A LINE L1 2576 3985 -3223 4318 173 24 15 chrX 62449040 62449911 -114524229 + L1PA16 LINE L1 5281 6159 -7 2120 118 3 3 chrX 62450061 62450367 -114523773 + AluSq SINE Alu 1 306 -7 1428 197 42 3 chrX 62450410 62450795 -114523345 + L1MA4A LINE L1 4142 4541 -2667 623 206 0 0 chrX 62450796 62450937 -114523203 + L1MA4A LINE L1 4769 4909 -2299 25807 51 5 4 chrX 62450949 62454177 -114519963 + L1PA4 LINE L1 13 3244 -2930 5932 48 1 0 chrX 62454177 62454904 -114519236 + L1PA3 LINE L1 5422 6152 -3 25807 51 5 4 chrX 62454904 62457837 -114516303 + L1PA4 LINE L1 3244 6174 0 6089 175 43 27 chrX 62457837 62460247 -114513893 + L1MA4A LINE L1 4921 7361 -4 4982 177 25 27 chrX 62460252 62461526 -114512614 + L1MA9 LINE L1 5042 6308 -4 897 253 125 24 chrX 62461581 62461870 -114512270 - MER102a DNA MER1_type -5 325 8 2806 122 14 2 chrX 62462071 62462505 -114511635 + LTR56 LTR ERV1 1 439 -6 474 241 0 115 chrX 62464627 62464722 -114509418 + L1PB4 LINE L1 1 105 -6744 1457 78 0 0 chrX 62464722 62464913 -114509227 - L1PA8 LINE L1 -14 6158 5968 2200 120 0 0 chrX 62464915 62465214 -114508926 - AluSq SINE Alu -14 299 1 474 241 0 115 chrX 62465214 62465306 -114508834 + L1PB4 LINE L1 106 169 -6680 1007 208 45 83 chrX 62465355 62465455 -114508685 + AluJo SINE Alu 32 134 -178 212 0 36 0 chrX 62465455 62465483 -114508657 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1007 208 45 83 chrX 62465483 62465670 -114508470 + AluJo SINE Alu 134 308 -4 299 25 25 0 chrX 62465694 62465734 -114508406 + (GGGAGA)n Simple_repeat Simple_repeat 2 42 0 380 129 0 14 chrX 62465750 62465820 -114508320 + (GGAA)n Simple_repeat Simple_repeat 1 69 0 366 269 80 102 chrX 62465820 62466184 -114507956 + L1PB4 LINE L1 174 529 -6321 * 6557 214 16 29 chrX 62466178 62467916 -114506224 + L1PB4 LINE L1 3441 5156 -1693 1633 118 4 0 chrX 62467916 62468224 -114505916 - L1P3 LINE L1 -4680 1781 1482 4438 179 38 25 chrX 62468230 62469518 -114504622 + L1PB4 LINE L1 5180 6499 -360 258 32 0 0 chrX 62469518 62469549 -114504591 + (CA)n Simple_repeat Simple_repeat 1 31 0 4438 179 38 25 chrX 62469549 62469912 -114504228 + L1PB4 LINE L1 6499 6856 -3 25 31 0 0 chrX 62469952 62469984 -114504156 + AT_rich Low_complexity Low_complexity 1 32 0 12352 89 17 1 chrX 62470145 62472667 -114501473 - L1PA6 LINE L1 -2 6152 3601 2519 33 0 0 chrX 62472676 62472980 -114501160 + L1PA4 LINE L1 5852 6155 0 21761 137 11 21 chrX 62472980 62476602 -114497538 - L1PA6 LINE L1 -2552 3594 11 2614 199 11 35 chrX 62476940 62477512 -114496628 + MER89 LTR ERV1 2 559 0 227 231 0 132 chrX 62477533 62477624 -114496516 + L2 LINE L2 2680 2758 -556 2036 148 3 0 chrX 62477628 62477932 -114496208 - AluSx SINE Alu -7 305 1 435 185 65 0 chrX 62477945 62478053 -114496087 - L1MC3 LINE L1 -8 7777 7663 2932 194 30 10 chrX 62478056 62478632 -114495508 + Tigger1 DNA MER2_type 2 588 -1830 6803 35 0 0 chrX 62478632 62479448 -114494692 - L1P LINE L1 -1764 4382 3567 1758 37 0 0 chrX 62479449 62479666 -114494474 + L1P LINE L1 4376 4592 -1554 * 18518 196 22 15 chrX 62479659 62479835 -114494305 - L1 LINE L1 -3498 4067 3894 2171 176 15 0 chrX 62479835 62480232 -114493908 - MER57A LTR ERV1 0 403 1 18518 196 22 15 chrX 62480232 62481725 -114492415 - L1 LINE L1 -3671 3894 2414 1542 79 9 5 chrX 62481725 62481939 -114492201 - L1PA7 LINE L1 -10 6144 5930 18518 196 22 15 chrX 62481939 62484291 -114489849 - L1 LINE L1 -5151 2414 13 2471 206 27 14 chrX 62484294 62484853 -114489287 - L1 LINE L1 -2208 3938 3373 6413 162 28 27 chrX 62484853 62485806 -114488334 - Tigger1 DNA MER2_type -1228 1190 234 1819 179 0 0 chrX 62485806 62486103 -114488037 + AluSx SINE Alu 3 299 -13 6413 162 28 27 chrX 62486103 62486338 -114487802 - Tigger1 DNA MER2_type -2184 234 1 35 24 0 0 chrX 62486774 62486816 -114487324 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chrX 62486909 62486954 -114487186 + AT_rich Low_complexity Low_complexity 1 45 0 232 248 199 22 chrX 62486957 62487183 -114486957 + L1ME4a LINE L1 5825 6090 -31 1760 168 35 27 chrX 62488538 62488908 -114485232 - THE1C LTR MaLR 0 375 3 353 342 5 37 chrX 62489036 62489226 -114484914 + L1ME LINE L1 4984 5167 -979 24 32 0 0 chrX 62489250 62489281 -114484859 + AT_rich Low_complexity Low_complexity 1 31 0 791 329 36 10 chrX 62489384 62489688 -114484452 - MLT1I LTR MaLR 0 409 98 464 318 34 23 chrX 62489853 62490090 -114484050 + L1ME LINE L1 5414 5653 -468 292 282 96 64 chrX 62490093 62490512 -114483628 - HAL1 LINE L1 -970 1537 1106 2271 118 7 0 chrX 62490512 62490818 -114483322 - AluSg SINE Alu -2 308 1 269 230 27 0 chrX 62491015 62491089 -114483051 + MER116 DNA Mariner 1 76 -4 22 0 0 0 chrX 62491146 62491168 -114482972 + AT_rich Low_complexity Low_complexity 1 22 0 340 329 131 40 chrX 62491168 62491396 -114482744 + HAL1 LINE L1 2224 2479 -28 207 0 0 0 chrX 62491396 62491419 -114482721 + (TG)n Simple_repeat Simple_repeat 2 24 0 340 329 131 40 chrX 62491419 62491442 -114482698 + HAL1 LINE L1 2479 2498 -9 207 0 0 0 chrX 62491442 62491465 -114482675 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 306 237 43 101 chrX 62491472 62491611 -114482529 + L1M4 LINE L1 2173 2303 -3843 1623 290 45 119 chrX 62491688 62492112 -114482028 + L1PB4 LINE L1 3 457 -6392 2883 13 0 0 chrX 62492112 62492427 -114481713 - AluYb8 SINE Alu -3 315 1 1623 290 45 119 chrX 62492427 62494177 -114479963 + L1PB4 LINE L1 457 2014 -4835 7886 221 24 5 chrX 62494187 62496566 -114477574 + L1PB4 LINE L1 4082 6498 -361 268 235 0 60 chrX 62496566 62496749 -114477391 + (TA)n Simple_repeat Simple_repeat 2 173 0 1947 174 11 8 chrX 62496758 62497119 -114477021 + L1PB4 LINE L1 6485 6846 -13 4826 85 2 0 chrX 62497276 62497921 -114476219 - L1PA7 LINE L1 0 6154 5509 216 0 0 0 chrX 62498096 62498120 -114476020 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2961 166 28 5 chrX 62499032 62499597 -114474543 - L1PA15 LINE L1 -7 6158 5581 3381 240 35 37 chrX 62499604 62500759 -114473381 - L1PA13 LINE L1 -2587 4210 3059 6290 93 8 0 chrX 62500783 62502277 -114471863 - L1PA7 LINE L1 -11 6458 4958 12349 54 3 0 chrX 62502295 62504677 -114469463 - L1PA4 LINE L1 -2 6153 3764 8280 94 13 0 chrX 62504672 62505879 -114468261 - L1PA4 LINE L1 -4921 1225 3 * 10616 113 15 61 chrX 62505882 62507905 -114466235 - L1PA7 LINE L1 -1489 4972 3042 * 10629 126 3 2 chrX 62507901 62509557 -114464583 - L1PA7 LINE L1 -4797 1664 8 1007 236 71 15 chrX 62509561 62509887 -114464253 - L1PA13 LINE L1 -3725 3072 2729 * 3100 275 46 16 chrX 62509873 62510903 -114463237 - L1PA13 LINE L1 -4786 2001 941 1738 219 62 2 chrX 62511021 62511423 -114462717 + MSTB LTR MaLR 1 426 0 6578 233 11 37 chrX 62511423 62511995 -114462145 + MSTB-int LTR MaLR 1 586 -785 339 25 0 0 chrX 62511995 62512035 -114462105 + (TTA)n Simple_repeat Simple_repeat 3 42 0 5440 50 0 0 chrX 62512035 62512692 -114461448 - L1PA3 LINE L1 -18 6137 5481 6578 233 11 37 chrX 62512692 62513811 -114460329 + MSTB-int LTR MaLR 584 1365 -6 340 132 2 2 chrX 62513813 62513874 -114460266 + MSTB LTR MaLR 2 62 -366 40332 54 2 2 chrX 62513874 62520024 -114454116 + L1PA3 LINE L1 21 6167 0 8184 165 49 14 chrX 62520026 62521677 -114452463 - L1M1 LINE L1 -4380 3185 1477 870 220 37 5 chrX 62521681 62521899 -114452241 + ERVL LTR ERVL 3966 4190 -1574 1016 251 283 6 chrX 62521899 62522369 -114451771 + MLT2F LTR ERVL 3 602 -61 227 200 0 27 chrX 62522370 62522430 -114451710 + (TCTA)n Simple_repeat Simple_repeat 2 61 -13 1863 155 109 20 chrX 62522430 62522823 -114451317 - MSTA LTR MaLR 0 428 1 227 200 0 27 chrX 62522823 62522837 -114451303 + (TCTA)n Simple_repeat Simple_repeat 61 74 0 1868 242 40 25 chrX 62522979 62523529 -114450611 + MER74A LTR ERVL 1 558 0 634 111 0 0 chrX 62525159 62525249 -114448891 + 5S rRNA rRNA 1 90 -31 22 35 0 0 chrX 62525267 62525296 -114448844 + AT_rich Low_complexity Low_complexity 1 29 0 183 42 0 0 chrX 62526336 62526360 -114447780 + (CA)n Simple_repeat Simple_repeat 2 25 0 394 197 0 0 chrX 62526439 62526515 -114447625 + MLT1A1 LTR MaLR 2 77 -288 471 250 14 7 chrX 62526694 62526842 -114447298 - L1M4 LINE L1 -2154 3992 3844 266 280 91 44 chrX 62526853 62527371 -114446769 - L1M4 LINE L1 -2588 3558 3017 10157 44 8 0 chrX 62527373 62529053 -114445087 + L1PA4 LINE L1 4076 5766 -389 1097 57 0 0 chrX 62529053 62529192 -114444948 + L1PA4 LINE L1 6008 6148 -7 339 250 0 0 chrX 62529225 62529317 -114444823 - L1M4 LINE L1 -3119 3027 2936 * 1990 123 2 99 chrX 62529316 62529672 -114444468 + L1P LINE L1 3030 3334 -2812 2282 48 10 3 chrX 62529672 62529946 -114444194 + L1PA5 LINE L1 5851 6143 -11 1990 123 2 99 chrX 62529946 62530043 -114444097 + L1P LINE L1 3334 3439 -2707 1919 25 8 0 chrX 62530041 62530279 -114443861 - L1PA4 LINE L1 -418 5737 5498 * 3228 53 2 2 chrX 62530279 62530693 -114443447 + L1PA4 LINE L1 5741 6155 0 1184 135 0 5 chrX 62530708 62530901 -114443239 + L1P LINE L1 3426 3617 -2529 1269 255 6 8 chrX 62530931 62531402 -114442738 - L1M4 LINE L1 -3221 2925 2456 1639 219 34 4 chrX 62531403 62531901 -114442239 - L1M4 LINE L1 -3038 3344 2832 1501 239 64 13 chrX 62531902 62532279 -114441861 + MSTD LTR MaLR 1 396 0 4356 244 80 92 chrX 62532280 62534021 -114440119 + MSTD-int LTR MaLR 2 1720 -15 1342 206 92 24 chrX 62534035 62534404 -114439736 + MSTD LTR MaLR 1 394 -2 434 235 109 36 chrX 62534407 62534654 -114439486 - L1M4 LINE L1 -3549 2833 2569 2238 220 66 21 chrX 62534654 62535323 -114438817 - MER67C LTR ERV1 -11 699 1 1593 140 19 15 chrX 62535366 62535637 -114438503 - THE1C LTR MaLR 0 375 104 8104 149 43 43 chrX 62535637 62537164 -114436976 - THE1C-int LTR MaLR -53 1527 1 2493 132 11 3 chrX 62537164 62537536 -114436604 - THE1C LTR MaLR 0 375 1 268 235 127 19 chrX 62537583 62537796 -114436344 - L1M4 LINE L1 -3914 2470 2235 7390 144 39 8 chrX 62537825 62539669 -114434471 + L1PB1 LINE L1 685 2758 -4105 6089 227 17 8 chrX 62539676 62541439 -114432701 + L1PB1 LINE L1 2826 4603 -2259 1860 35 0 0 chrX 62541442 62541673 -114432467 - L1P2 LINE L1 -338 5817 5587 * 33776 56 7 2 chrX 62541663 62547012 -114427128 + L1PA4 LINE L1 776 6155 0 5677 184 11 3 chrX 62547066 62549257 -114424883 + L1PB1 LINE L1 4664 6867 0 21 0 0 0 chrX 62549260 62549281 -114424859 + AT_rich Low_complexity Low_complexity 1 21 0 1213 246 65 42 chrX 62549398 62549498 -114424642 - L1M4c LINE L1 -4488 1896 1800 3931 154 29 12 chrX 62549498 62549871 -114424269 + L1PB2 LINE L1 5405 5770 -381 423 0 0 0 chrX 62549871 62549918 -114424222 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 3931 154 29 12 chrX 62549918 62550279 -114423861 + L1PB2 LINE L1 5770 6151 0 1213 246 65 42 chrX 62550279 62550748 -114423392 - L1M4c LINE L1 -4584 1800 1314 3524 186 29 9 chrX 62550766 62551137 -114423003 - L1PB4 LINE L1 -2 6154 5792 207 114 0 0 chrX 62551137 62551172 -114422968 + (TG)n Simple_repeat Simple_repeat 2 36 0 3524 186 29 9 chrX 62551172 62551552 -114422588 - L1PB4 LINE L1 -364 5792 5388 5183 170 21 4 chrX 62551556 62553369 -114420771 - L1PB2 LINE L1 -2 6865 5026 7045 232 26 9 chrX 62553371 62555261 -114418879 - L1PB2 LINE L1 -5223 1640 3 2625 249 15 7 chrX 62555340 62556056 -114418084 - L1PB4 LINE L1 -880 5266 4545 317 143 0 16 chrX 62556068 62556131 -114418009 - LTR43 LTR ERV1 -346 256 195 246 178 0 0 chrX 62556343 62556388 -114417752 + L1PA16 LINE L1 6106 6150 -16 1733 204 99 8 chrX 62556453 62557047 -114417093 - L1MA8 LINE L1 -18 6273 5627 * 18704 192 30 8 chrX 62557042 62563682 -114410458 - L1PA12 LINE L1 -781 6803 5 12531 131 4 10 chrX 62563704 62566543 -114407597 - L1PA8 LINE L1 0 6172 3342 1541 218 44 11 chrX 62566543 62567112 -114407028 - L1MA8 LINE L1 -1027 5119 4430 12110 240 234 10 chrX 62567186 62571257 -114402883 - L1MA1 LINE L1 0 7721 4566 1881 117 63 27 chrX 62571257 62571556 -114402584 - AluSx SINE Alu -1 311 2 12110 240 234 10 chrX 62571556 62574520 -114399620 - L1MA1 LINE L1 -3155 4566 36 1421 329 105 43 chrX 62574539 62574601 -114399539 - L2 LINE L2 -1537 1777 1720 402 42 0 69 chrX 62574601 62574714 -114399426 + L1PA2 LINE L1 6089 6155 0 1421 329 105 43 chrX 62574714 62575799 -114398341 - L2 LINE L2 -1594 1720 558 1243 198 62 4 chrX 62577088 62577346 -114396794 + L1M1 LINE L1 1 273 -7292 * 40234 52 0 2 chrX 62577345 62583219 -114390921 + L1PA3 LINE L1 309 6174 0 7447 137 9 0 chrX 62583219 62584293 -114389847 + THE1A-int LTR MaLR 484 1567 -13 2078 153 11 6 chrX 62584298 62584651 -114389489 + THE1A LTR MaLR 1 355 0 1481 183 11 0 chrX 62584651 62584936 -114389204 + L1M1 LINE L1 2000 2287 -5278 6072 189 20 49 chrX 62584949 62587179 -114386961 + L1M1 LINE L1 2451 4578 -2987 4442 86 0 2 chrX 62587179 62587781 -114386359 + L1PA7 LINE L1 5550 6150 -4 6072 189 20 49 chrX 62587781 62588394 -114385746 + L1M1 LINE L1 4578 5207 -2358 23722 136 46 76 chrX 62588404 62593375 -114380765 + L1PA7 LINE L1 12 4831 -1315 6601 89 0 0 chrX 62593377 62594740 -114379400 + L1PA7 LINE L1 4781 6150 -4 4487 213 28 41 chrX 62594751 62595961 -114378179 + L1 LINE L1 3515 4709 -1437 2013 122 3 23 chrX 62595961 62596264 -114377876 + AluSc SINE Alu 1 297 -12 4487 213 28 41 chrX 62596264 62596308 -114377832 + L1 LINE L1 4709 4752 -1394 42472 53 1 1 chrX 62596313 62602466 -114371674 + L1PA2 LINE L1 3 6156 -3360 28 61 0 0 chrX 62602466 62602515 -114371625 + AT_rich Low_complexity Low_complexity 1 49 0 42472 53 1 1 chrX 62602515 62602532 -114371608 + L1PA2 LINE L1 6156 6172 -3344 19902 43 0 0 chrX 62602532 62605807 -114368333 + L1PA3 LINE L1 2840 6153 -2 42472 53 1 1 chrX 62605807 62605828 -114368312 + L1PA2 LINE L1 6172 9516 0 1366 184 4 0 chrX 62605828 62606094 -114368046 + L1PA13 LINE L1 4068 4334 -1812 * 32244 118 10 12 chrX 62606088 62612249 -114361891 - L1PA6 LINE L1 0 6154 11 2789 195 10 38 chrX 62612269 62612956 -114361184 + L1PA13 LINE L1 4326 4993 -1153 848 143 0 0 chrX 62612956 62613075 -114361065 + AluSc SINE Alu 133 251 -58 194 0 0 37 chrX 62613080 62613107 -114361033 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4261 159 73 4 chrX 62613108 62613284 -114360856 + L1PA13 LINE L1 4990 5152 -1011 203 0 37 0 chrX 62613284 62613311 -114360829 + (TA)n Simple_repeat Simple_repeat 2 29 0 4261 159 73 4 chrX 62613311 62614196 -114359944 + L1PA13 LINE L1 5152 6121 -42 1066 230 42 3 chrX 62614227 62614558 -114359582 + L1 LINE L1 3439 3782 -2364 38474 77 1 2 chrX 62614579 62620730 -114353410 - L1PA5 LINE L1 -7 6147 1 267 133 0 0 chrX 62620735 62620780 -114353360 + L1 LINE L1 3800 3844 -2302 8291 254 28 6 chrX 62620790 62620870 -114353270 + L1M1 LINE L1 13 90 -7475 225 0 0 0 chrX 62620870 62620895 -114353245 + (CA)n Simple_repeat Simple_repeat 2 26 0 8291 254 28 6 chrX 62620895 62622846 -114351294 + L1M1 LINE L1 90 2088 -5477 1221 268 33 82 chrX 62622847 62623458 -114350682 + LTR9 LTR ERV1 1 581 -31 28242 150 29 39 chrX 62623528 62625535 -114348605 + HUERS-P3 LTR ERV1 1 2026 -6893 2187 130 3 10 chrX 62625535 62625843 -114348297 + AluSx SINE Alu 1 306 -6 28242 150 29 39 chrX 62625843 62628498 -114345642 + HUERS-P3 LTR ERV1 2026 4608 -4311 1856 131 0 78 chrX 62628498 62628804 -114345336 + AluSg1 SINE Alu 1 282 -27 28242 150 29 39 chrX 62628804 62629424 -114344716 + HUERS-P3 LTR ERV1 4608 5233 -3686 8078 125 33 14 chrX 62629426 62630741 -114343399 + L1PA7 LINE L1 1 1339 -5122 7087 29 4 0 chrX 62630737 62631645 -114342495 - L1P LINE L1 -3063 3083 2172 * 6839 23 0 0 chrX 62631645 62632433 -114341707 + L1PA2 LINE L1 5362 6152 -3 25582 120 9 7 chrX 62632528 62636691 -114337449 + L1PA7 LINE L1 1314 5487 -982 306 0 0 0 chrX 62636691 62636725 -114337415 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 25582 120 9 7 chrX 62636725 62637707 -114336433 + L1PA7 LINE L1 5487 6466 -3 6905 111 11 2 chrX 62637707 62638749 -114335391 + HUERS-P3 LTR ERV1 5225 6275 -2644 17456 115 6 4 chrX 62638801 62641350 -114332790 + HUERS-P3 LTR ERV1 6366 8919 0 1308 244 49 85 chrX 62641350 62641985 -114332155 + LTR9 LTR ERV1 1 612 0 4987 172 26 20 chrX 62641985 62642218 -114331922 + L1M1 LINE L1 2086 2316 -5249 16644 53 1 0 chrX 62642218 62645082 -114329058 + L1PA4 LINE L1 3279 6144 -11 4987 172 26 20 chrX 62645082 62646417 -114327723 + L1M1 LINE L1 2316 3831 -3734 10098 170 22 53 chrX 62646420 62649886 -114324254 + L1P3 LINE L1 1 3573 -2888 2201 116 0 7 chrX 62649886 62650180 -114323960 + AluSg SINE Alu 1 292 -18 10098 170 22 53 chrX 62650180 62650223 -114323917 + L1P3 LINE L1 3573 3393 -3068 2092 139 0 7 chrX 62650223 62650532 -114323608 + AluSq SINE Alu 1 307 -6 10098 170 22 53 chrX 62650532 62650563 -114323577 + L1P3 LINE L1 3392 3422 -3039 2243 96 0 0 chrX 62650554 62650877 -114323263 - L1P LINE L1 -2015 4131 3809 * 5699 101 4 27 chrX 62650871 62652193 -114321947 + L1PA8A LINE L1 4814 6102 -29 273 100 0 0 chrX 62652217 62652267 -114321873 + L1PA8A LINE L1 5352 5401 -771 32594 111 10 16 chrX 62652278 62658453 -114315687 + L1PA6 LINE L1 11 6152 -2 2187 64 3 0 chrX 62658454 62658750 -114315390 + L1PA8A LINE L1 5387 5683 -448 7252 221 21 6 chrX 62658809 62660391 -114313749 + L1PA13 LINE L1 1 1605 -5182 1684 126 22 0 chrX 62660408 62660678 -114313462 - L1PB2 LINE L1 0 6151 5876 864 152 171 0 chrX 62660681 62660845 -114313295 - L1PA13 LINE L1 -6199 588 397 447 170 0 21 chrX 62660818 62660912 -114313228 - L1PB2 LINE L1 -256 6546 6455 * 279 51 0 0 chrX 62660908 62660947 -114313193 - L1PA13 LINE L1 -6348 439 401 * 3103 177 17 18 chrX 62660939 62661854 -114312286 - L1PB2 LINE L1 -270 5881 4970 3318 98 4 0 chrX 62661862 62662313 -114311827 - MLT2A2 LTR ERVL 0 453 1 38843 105 6 7 chrX 62662313 62667972 -114306168 - HERVL-A2 LTR ERVL 0 5654 1 3038 132 11 0 chrX 62667972 62668420 -114305720 - MLT2A2 LTR ERVL 0 453 1 5248 208 12 4 chrX 62668420 62669698 -114304442 - L1PB2 LINE L1 -1180 4966 3678 2857 177 35 26 chrX 62669695 62670059 -114304081 + L1PA13 LINE L1 1618 1992 -4795 * 1664 121 7 46 chrX 62670059 62670340 -114303800 - L1PA11 LINE L1 0 6174 5905 2857 177 35 26 chrX 62670340 62670630 -114303510 + L1PA13 LINE L1 1992 2278 -4509 3208 254 26 6 chrX 62670650 62671603 -114302537 + L1PA13 LINE L1 2636 3607 -3190 7825 231 95 5 chrX 62671614 62673493 -114300647 + L1M1 LINE L1 62 2109 -5456 910 209 10 0 chrX 62673498 62673694 -114300446 + L1PB1 LINE L1 3 200 -6663 1182 167 12 32 chrX 62673694 62673945 -114300195 + L1PB1 LINE L1 634 879 -5984 2854 252 62 5 chrX 62673962 62674402 -114299738 + L1PB1 LINE L1 6 419 -6444 219 36 0 0 chrX 62674402 62674430 -114299710 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2854 252 62 5 chrX 62674430 62674970 -114299170 + L1PB1 LINE L1 419 1042 -5821 11934 209 18 30 chrX 62674976 62677952 -114296188 + L1PB1 LINE L1 1092 4101 -2766 2409 93 0 0 chrX 62677952 62678275 -114295865 - L1PA7 LINE L1 -6 6148 5826 11934 209 18 30 chrX 62678275 62679761 -114294379 + L1PB1 LINE L1 4101 5689 -1178 2116 124 0 7 chrX 62679761 62680059 -114294081 + AluSq SINE Alu 1 296 -17 11934 209 18 30 chrX 62680059 62681224 -114292916 + L1PB1 LINE L1 5689 6866 -1 1260 161 4 44 chrX 62681221 62681495 -114292645 + L1PB1 LINE L1 863 1125 -5738 * 25765 136 17 11 chrX 62681493 62687921 -114286219 - L1PA8 LINE L1 0 6487 5 7800 190 52 13 chrX 62687929 62690085 -114284055 + L1PB1 LINE L1 1113 3593 -3269 2406 76 0 10 chrX 62690085 62690388 -114283752 + AluY SINE Alu 1 300 -11 7800 190 52 13 chrX 62690388 62691587 -114282553 + L1PB1 LINE L1 3593 4744 -2118 19229 96 1 2 chrX 62691587 62694381 -114279759 + L1PA5 LINE L1 1 2793 -3353 12146 59 1 4 chrX 62694381 62696742 -114277398 + L1PA5 LINE L1 3793 6154 0 4421 206 12 12 chrX 62696766 62697737 -114276403 + L1PB1 LINE L1 4728 5700 -1167 7520 30 0 0 chrX 62697737 62699264 -114274876 + L1PA3 LINE L1 4615 6141 -14 4421 206 12 12 chrX 62699264 62700018 -114274122 + L1PB1 LINE L1 5700 6452 -415 330 196 0 72 chrX 62700020 62700117 -114274023 + L1MC4 LINE L1 6614 6703 -1339 2203 131 11 3 chrX 62700137 62700503 -114273637 + L1PB1 LINE L1 6499 6867 0 4105 173 23 29 chrX 62700525 62701507 -114272633 + L1MA2 LINE L1 2088 3064 -4501 1374 225 12 0 chrX 62701504 62701824 -114272316 + L1M1 LINE L1 3701 4024 -3541 * 2625 213 36 10 chrX 62701830 62702913 -114271227 + L1MA2 LINE L1 3061 4169 -3396 * 28326 133 20 58 chrX 62702912 62705382 -114268758 - L1PA7 LINE L1 -1 6153 3592 294 73 0 0 chrX 62705382 62705423 -114268717 + (TG)n Simple_repeat Simple_repeat 2 42 0 28326 133 20 58 chrX 62705423 62709347 -114264793 - L1PA7 LINE L1 -2562 3592 12 7888 218 29 20 chrX 62709381 62711412 -114262728 + L1MA2 LINE L1 4184 6231 -1334 1624 233 23 17 chrX 62711412 62711889 -114262251 - L1MA2 LINE L1 -768 6797 6318 * 2376 142 26 0 chrX 62711885 62712272 -114261868 + L1MA2 LINE L1 6804 7200 -523 1179 172 0 0 chrX 62712278 62712476 -114261664 + L1PB1 LINE L1 3 200 -6663 13382 204 66 18 chrX 62712476 62718079 -114256061 + L1PB1 LINE L1 634 6540 -327 396 0 0 0 chrX 62718079 62718123 -114256017 + (CA)n Simple_repeat Simple_repeat 1 44 0 13382 204 66 18 chrX 62718123 62718436 -114255704 + L1PB1 LINE L1 6540 6837 -30 2758 171 14 2 chrX 62718483 62719002 -114255138 + L1MA2 LINE L1 7199 7723 0 520 219 33 20 chrX 62719016 62719167 -114254973 + L1 LINE L1 3921 4073 -2073 801 161 0 0 chrX 62719168 62719305 -114254835 + L1 LINE L1 4182 4318 -1828 10773 247 46 19 chrX 62719336 62720019 -114254121 - L1PA16 LINE L1 -9 6808 6145 1817 164 0 7 chrX 62720019 62720306 -114253834 + AluSx SINE Alu 1 285 -27 10773 247 46 19 chrX 62720306 62724144 -114249996 - L1PA16 LINE L1 -672 6145 2168 1743 170 39 10 chrX 62724160 62724466 -114249674 - MER51B LTR ERV1 0 377 63 318 159 36 145 chrX 62724458 62724596 -114249544 - MER51B LTR ERV1 -215 162 40 * 460 179 37 30 chrX 62724596 62724737 -114249403 - MER51A LTR ERV1 -236 141 1 1708 288 30 11 chrX 62724737 62725359 -114248781 - L1PA16 LINE L1 -4643 2144 1511 413 318 20 20 chrX 62726224 62726372 -114247768 - L1PA16 LINE L1 -5268 1519 1372 1103 393 5 19 chrX 62726414 62727009 -114247131 - L1PA16 LINE L1 -6200 587 1 9167 232 28 19 chrX 62727018 62729510 -114244630 + L1 LINE L1 2611 5127 -1019 2383 147 10 2 chrX 62729510 62729917 -114244223 + L1MA3 LINE L1 5896 6305 0 9167 232 28 19 chrX 62729917 62729937 -114244203 + L1 LINE L1 5127 5145 -1001 5251 187 38 30 chrX 62729929 62731627 -114242513 + L1MA7 LINE L1 4077 5791 -500 * 303 146 0 0 chrX 62731629 62731684 -114242456 + (TA)n Simple_repeat Simple_repeat 2 56 0 2626 180 2 17 chrX 62731684 62732200 -114241940 + L1MA7 LINE L1 5781 6288 -3 1444 177 119 25 chrX 62732401 62732728 -114241412 - MSTC LTR MaLR 0 428 71 1680 174 21 43 chrX 62732728 62733072 -114241068 + L1 LINE L1 4993 5328 -818 637 273 106 44 chrX 62733072 62733413 -114240727 - MLT1A1 LTR MaLR 0 365 4 1680 174 21 43 chrX 62733413 62733488 -114240652 + L1 LINE L1 5328 5403 -743 14472 185 25 13 chrX 62733489 62736877 -114237263 + L1MA2 LINE L1 2131 5561 -741 249 62 0 0 chrX 62736880 62736912 -114237228 + tRNA-Tyr-TAC tRNA tRNA 1 32 -44 4860 114 8 11 chrX 62736931 62737677 -114236463 + L1MA2 LINE L1 5548 6291 -13 14526 199 22 24 chrX 62737677 62741239 -114232901 + L1MA4A LINE L1 1633 5192 -1813 2277 184 16 14 chrX 62741239 62741668 -114232472 - MSTB1 LTR MaLR 0 432 3 14526 199 22 24 chrX 62741668 62743477 -114230663 + L1MA4A LINE L1 5192 7003 -2 261 0 0 0 chrX 62743528 62743557 -114230583 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 306 108 10 chrX 62743640 62743928 -114230212 + L1M4 LINE L1 2917 3232 -2914 2167 304 125 41 chrX 62744004 62745169 -114228971 - L2 LINE L2 -288 3025 1762 198 0 0 0 chrX 62745566 62745588 -114228552 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 212 197 0 16 chrX 62746691 62746752 -114227388 + GA-rich Low_complexity Low_complexity 1 60 0 1085 298 24 31 chrX 62746807 62747260 -114226880 + LTR16A LTR ERVL 1 450 0 979 249 51 0 chrX 62747264 62747501 -114226639 - MIR SINE MIR -12 250 2 451 305 26 19 chrX 62747656 62747810 -114226330 + L2 LINE L2 2643 2797 -517 788 304 63 22 chrX 62747878 62748194 -114225946 + MLT1I LTR MaLR 63 391 -18 2381 93 0 0 chrX 62748352 62748652 -114225488 + AluSg SINE Alu 1 300 -10 429 265 111 129 chrX 62751354 62752401 -114221739 - L1M2 LINE L1 -5470 1379 391 205 176 0 0 chrX 62753661 62753695 -114220445 + GA-rich Low_complexity Low_complexity 1 34 0 3458 70 7 0 chrX 62753843 62754271 -114219869 - L1PA7 LINE L1 0 6154 5724 319 326 46 13 chrX 62754500 62754739 -114219401 + L1ME LINE L1 5590 5836 -285 304 257 38 8 chrX 62754974 62755122 -114219018 + L1MCa LINE L1 1706 2207 -4220 1258 200 32 104 chrX 62755241 62755341 -114218799 - LTR55 LTR ERV -4 544 438 4106 131 11 35 chrX 62755341 62755991 -114218149 - L1PA16 LINE L1 -9 6157 5524 1258 200 32 104 chrX 62755991 62756420 -114217720 - LTR55 LTR ERV -110 438 1 2878 199 25 13 chrX 62757267 62757819 -114216321 + MER89 LTR ERV1 1 559 0 251 160 40 0 chrX 62758553 62758603 -114215537 - MER89 LTR ERV1 0 559 508 1751 60 5 0 chrX 62759896 62760113 -114214027 - L1PA4 LINE L1 0 6155 5938 42315 58 16 0 chrX 62760113 62765464 -114208676 - L1P2 LINE L1 -722 5433 1 3979 102 18 0 chrX 62765464 62765647 -114208493 - L1PB1 LINE L1 -177 5974 5796 315 0 0 0 chrX 62765647 62765682 -114208458 + (TA)n Simple_repeat Simple_repeat 1 35 0 3979 102 18 0 chrX 62765682 62766066 -114208074 - L1PB1 LINE L1 -355 5796 5397 352 277 0 0 chrX 62766072 62766173 -114207967 - L1 LINE L1 -1071 5075 4975 * 12709 202 25 34 chrX 62766162 62767877 -114206263 - L1PBa LINE L1 -1014 5848 4120 2167 138 0 0 chrX 62767877 62768189 -114205951 - AluSx SINE Alu 0 312 1 1821 155 7 0 chrX 62768189 62768466 -114205674 - AluSq SINE Alu -34 279 1 12709 202 25 34 chrX 62768466 62769997 -114204143 - L1PBa LINE L1 -2740 4122 2632 1521 212 33 50 chrX 62770114 62770534 -114203606 + LTR55 LTR ERV 3 415 -133 1523 118 90 0 chrX 62770539 62770750 -114203390 - MER30 DNA MER1_type 0 230 1 962 191 0 12 chrX 62771026 62771188 -114202952 + FRAM SINE Alu 1 155 -21 426 20 0 0 chrX 62772391 62772442 -114201698 + (TG)n Simple_repeat Simple_repeat 1 51 0 1141 132 49 15 chrX 62772442 62772646 -114201494 - L1MA8 LINE L1 -140 6151 5941 2317 210 33 5 chrX 62823164 62824234 -114149906 + L1P5 LINE L1 4706 5803 -353 1200 194 44 20 chrX 62824358 62824651 -114149489 + L1 LINE L1 3985 4284 -1862 4749 196 10 14 chrX 62825539 62826500 -114147640 + MER50-int LTR ERV1 3894 7004 -201 330 188 16 0 chrX 62826603 62826667 -114147473 - AluS SINE Alu -237 65 1 1670 255 62 24 chrX 62826670 62827696 -114146444 - L1 LINE L1 -3571 2811 1631 1591 217 3 20 chrX 62827696 62827996 -114146144 - AluJb SINE Alu -17 295 1 1670 255 62 24 chrX 62827996 62828328 -114145812 - L1 LINE L1 -4751 1631 1313 1294 154 4 0 chrX 62828337 62828570 -114145570 - L1MA2 LINE L1 0 6304 6071 1569 205 21 71 chrX 62828615 62829137 -114145003 - L1 LINE L1 -1150 5712 5217 1778 201 25 5 chrX 62829268 62832347 -114141793 + L1PB1 LINE L1 2924 6103 -48 8501 202 99 30 chrX 62832453 62833663 -114140477 - L1PBa LINE L1 -2425 4437 3312 8579 26 6 257 chrX 62833663 62835439 -114138701 - SVA Other Other 0 1386 57 279 0 0 0 chrX 62835439 62835470 -114138670 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 8501 202 99 30 chrX 62835470 62838405 -114135735 - L1PBa LINE L1 -3549 3313 6 989 118 15 0 chrX 62838468 62838604 -114135536 - AluSg/x SINE Alu -19 293 156 1449 148 126 4 chrX 62838612 62838890 -114135250 - MER4B LTR ERV1 -234 376 65 852 65 0 0 chrX 62839141 62839265 -114134875 + (TA)n Simple_repeat Simple_repeat 1 124 0 2014 151 6 0 chrX 62839269 62839614 -114134526 + L1PB1 LINE L1 5797 6143 -8 28 0 0 0 chrX 62839621 62839649 -114134491 + AT_rich Low_complexity Low_complexity 1 28 0 3018 134 4 4 chrX 62839649 62840127 -114134013 + L1PA13 LINE L1 5675 6152 -11 1462 186 69 49 chrX 62840129 62840581 -114133559 + L1MA9 LINE L1 5816 6276 -36 1500 241 70 76 chrX 62840604 62841071 -114133069 + L1MEc LINE L1 1010 1478 -4918 1776 200 7 7 chrX 62841071 62841376 -114132764 - AluJb SINE Alu -7 305 1 1500 241 70 76 chrX 62841376 62842132 -114132008 + L1MEc LINE L1 1478 2226 -4170 * 10031 231 37 3 chrX 62842117 62843817 -114130323 + L1M1 LINE L1 23 1822 -5743 384 40 0 0 chrX 62843817 62843867 -114130273 + (GA)n Simple_repeat Simple_repeat 1 50 0 10031 231 37 3 chrX 62843867 62844438 -114129702 + L1M1 LINE L1 1822 2372 -5193 1745 52 4 13 chrX 62844426 62844659 -114129481 + L1PA4 LINE L1 5811 6041 -114 * 491 122 47 9 chrX 62845043 62845150 -114128990 + L1PB2 LINE L1 6038 6148 -3 438 203 113 8 chrX 62845152 62845285 -114128855 + L1MC3 LINE L1 7632 7778 -7 944 266 74 33 chrX 62845302 62845880 -114128260 + L1M1 LINE L1 3530 4131 -3434 2181 119 74 3 chrX 62845893 62846245 -114127895 + MER51B LTR ERV1 1 377 0 343 77 0 0 chrX 62846245 62846297 -114127843 + MER51B-int LTR ERV1 1 52 -7764 * 6044 133 62 32 chrX 62846286 62847567 -114126573 + MER51-int LTR ERV1 2008 3326 -4490 270 114 43 14 chrX 62847549 62847619 -114126521 + MER51-int LTR ERV1 3634 3705 -4111 * 12484 109 7 11 chrX 62847619 62850311 -114123829 - L1PA7 LINE L1 -4 6150 3462 2864 217 32 34 chrX 62850411 62851866 -114122274 - L1 LINE L1 -1223 4923 3400 21358 138 27 23 chrX 62851867 62852488 -114121652 - L1HS LINE L1 -20 6135 5518 1988 123 0 27 chrX 62852488 62852780 -114121360 - AluSg SINE Alu -26 284 1 21358 138 27 23 chrX 62852780 62856492 -114117648 - L1HS LINE L1 -637 5518 1783 6244 151 1 5 chrX 62856600 62857634 -114116506 - L1P LINE L1 -3183 2963 1934 305 109 0 0 chrX 62857627 62857673 -114116467 - L1P5 LINE L1 -342 5809 5764 * 577 133 142 0 chrX 62857671 62857784 -114116356 + L1PBa LINE L1 2350 2478 -4385 3329 120 11 2 chrX 62857787 62858253 -114115887 + L1PBa LINE L1 402 871 -5991 * 3864 261 32 22 chrX 62858242 62859845 -114114295 + L1PBa LINE L1 2547 4167 -2695 934 141 23 0 chrX 62859836 62860013 -114114127 + L1MA2 LINE L1 5938 6118 -186 * 2088 169 36 6 chrX 62860013 62860374 -114113766 + MSTA LTR MaLR 1 372 -56 431 91 61 0 chrX 62861667 62861733 -114112407 + MSTA LTR MaLR 358 427 -1 1137 134 0 10 chrX 62861733 62861927 -114112213 + L1MA2 LINE L1 6113 6304 0 4546 232 27 17 chrX 62861942 62863134 -114111006 + L1 LINE L1 3441 4648 -1498 1540 183 40 4 chrX 62863134 62863262 -114110878 + AluSx SINE Alu 1 123 -199 189 0 0 0 chrX 62863262 62863283 -114110857 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 1540 183 40 4 chrX 62863283 62863466 -114110674 + AluSx SINE Alu 123 322 0 4546 232 27 17 chrX 62863466 62863508 -114110632 + L1 LINE L1 4648 4688 -1458 14255 138 28 30 chrX 62863608 62865426 -114108714 - L1P3 LINE L1 -2770 3691 1871 219 88 0 0 chrX 62865426 62865460 -114108680 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 14255 138 28 30 chrX 62865460 62867243 -114106897 - L1P3 LINE L1 -4590 1871 1 1428 188 62 8 chrX 62867259 62867665 -114106475 + MER57-int LTR ERV1 1539 3172 -2774 * 1557 135 64 6 chrX 62867650 62868037 -114106103 + MER57-int LTR ERV1 2210 2663 -2554 319 172 0 0 chrX 62868020 62868078 -114106062 + MER57-int LTR ERV1 5249 5306 -2231 * 31857 40 0 1 chrX 62868079 62871998 -114102142 + L1P LINE L1 1123 5039 -1107 10896 153 18 26 chrX 62872100 62874985 -114099155 - L1P3 LINE L1 -3584 2877 6 4364 221 35 4 chrX 62874993 62876495 -114097645 - L1 LINE L1 -2732 4374 2817 306 0 0 0 chrX 62876495 62876529 -114097611 + (CA)n Simple_repeat Simple_repeat 1 34 0 4364 221 35 4 chrX 62876529 62876721 -114097419 - L1 LINE L1 -4289 2817 2632 237 320 0 0 chrX 62876724 62876823 -114097317 - L1 LINE L1 -5627 1403 1270 465 301 30 56 chrX 62877214 62877483 -114096657 + L1ME LINE L1 2 263 -5807 393 250 109 8 chrX 62877602 62877730 -114096410 + MER67C LTR ERV1 211 351 -359 874 204 44 9 chrX 62877737 62877962 -114096178 + MER67C LTR ERV1 476 708 -2 2024 136 0 37 chrX 62879121 62879445 -114094695 + AluSx SINE Alu 1 312 0 2164 195 62 7 chrX 62880594 62881140 -114093000 - L1 LINE L1 -1568 4578 3915 3999 231 57 27 chrX 62881154 62882055 -114092085 + L1M3f LINE L1 14 950 -4378 709 142 30 30 chrX 62882055 62882189 -114091951 + L1PA16 LINE L1 6030 6163 -3 3999 231 57 27 chrX 62882189 62882291 -114091849 + L1M3f LINE L1 950 1047 -4281 2680 219 11 54 chrX 62882398 62882540 -114091600 + L1M3f LINE L1 1055 1201 -5127 6562 51 1 0 chrX 62882540 62883349 -114090791 + L1PA6 LINE L1 5345 6154 0 2680 219 11 54 chrX 62883349 62884079 -114090061 + L1M3f LINE L1 1201 1890 -4438 654 168 0 0 chrX 62884081 62884188 -114089952 + AluSg/x SINE Alu 199 305 -7 1756 234 48 0 chrX 62884217 62884679 -114089461 + L1M3f LINE L1 2440 2923 -3405 1445 190 28 28 chrX 62884719 62885008 -114089132 - AluSx SINE Alu -23 289 1 3054 197 2 25 chrX 62885577 62886145 -114087995 - L1P3 LINE L1 -5320 555 1 3160 179 11 3 chrX 62886145 62887219 -114086921 - L1M1 LINE L1 -615 5687 4604 248 196 0 0 chrX 62887219 62887270 -114086870 - MADE1 DNA Mariner 0 80 30 * 1049 78 0 0 chrX 62887264 62887405 -114086735 + MLT2A1 LTR ERVL 222 362 -82 42671 34 21 1 chrX 62887406 62893437 -114080703 + L1HS LINE L1 4 6155 0 7976 211 22 10 chrX 62893455 62895383 -114078757 - L1M1 LINE L1 -1541 4605 2655 1690 236 12 2 chrX 62895387 62895786 -114078354 + L1P LINE L1 2462 2864 -3282 * 2372 166 29 0 chrX 62895781 62896240 -114077900 + L1P4 LINE L1 5222 5691 -472 13187 208 59 19 chrX 62896248 62898145 -114075995 + L1PA4 LINE L1 6 1825 -5042 2377 103 0 0 chrX 62898145 62898456 -114075684 + AluY SINE Alu 1 311 0 13187 208 59 19 chrX 62898456 62899407 -114074733 + L1PA4 LINE L1 1825 2736 -4131 10771 40 0 0 chrX 62899407 62901464 -114072676 + L1PA4 LINE L1 4798 6855 -16 13187 208 59 19 chrX 62901464 62904883 -114069257 + L1PA4 LINE L1 2736 6507 -360 828 101 0 40 chrX 62904883 62905215 -114068925 + (TA)n Simple_repeat Simple_repeat 1 318 0 23 0 0 0 chrX 62905220 62905243 -114068897 + AT_rich Low_complexity Low_complexity 1 23 0 3640 151 12 5 chrX 62905348 62906005 -114068135 + L1MA2 LINE L1 2490 3151 -4414 14554 144 16 112 chrX 62906019 62909416 -114064724 + L1P LINE L1 12 3081 -3065 4652 105 24 35 chrX 62909417 62911476 -114062664 + L1PA5 LINE L1 9 2088 -4066 4652 46 0 0 chrX 62911476 62912043 -114062097 + L1PA5 LINE L1 5588 6154 0 1772 192 3 16 chrX 62912046 62912421 -114061719 + L1MB3 LINE L1 5814 6183 0 4652 105 24 35 chrX 62912421 62915839 -114058301 + L1PA5 LINE L1 2090 6154 0 21 57 0 0 chrX 62915843 62915878 -114058262 + AT_rich Low_complexity Low_complexity 1 35 0 41101 50 23 1 chrX 62915878 62921895 -114052245 - L1PA3 LINE L1 -4 6151 3 5323 110 0 0 chrX 62921895 62922649 -114051491 + L1PA7 LINE L1 5398 6151 -3 12733 200 21 20 chrX 62922658 62922794 -114051346 + L1MA2 LINE L1 3140 3274 -4449 1809 192 3 0 chrX 62922794 62923102 -114051038 - AluSx SINE Alu -3 309 1 12733 200 21 20 chrX 62923102 62924027 -114050113 + L1MA2 LINE L1 3274 4197 -3526 1970 148 0 3 chrX 62924027 62924318 -114049822 + AluSx SINE Alu 1 290 -22 12733 200 21 20 chrX 62924318 62927317 -114046823 + L1MA2 LINE L1 4197 7199 -524 5914 119 6 0 chrX 62927313 62928205 -114045935 - L1PA8 LINE L1 -1166 4980 4084 * 1681 119 7 0 chrX 62928202 62928471 -114045669 + L1PA8 LINE L1 4995 5265 -881 * 1423 140 4 8 chrX 62928571 62928806 -114045334 + L1PA8 LINE L1 5939 6172 0 3146 143 13 2 chrX 62928806 62929333 -114044807 + L1MA2 LINE L1 7185 7723 0 21 36 0 0 chrX 62929370 62929398 -114044742 + AT_rich Low_complexity Low_complexity 1 28 0 8927 217 49 26 chrX 62929497 62931074 -114043066 + L1M2 LINE L1 2 1543 -4785 4959 9 0 0 chrX 62931074 62931634 -114042506 + L1PA2 LINE L1 5594 6153 -2 8927 217 49 26 chrX 62931634 62931657 -114042483 + L1M2 LINE L1 1543 1564 -4764 1197 98 40 0 chrX 62931657 62931831 -114042309 + L1PA7 LINE L1 5961 6141 -13 8927 217 49 26 chrX 62931831 62933348 -114040792 + L1M2 LINE L1 1564 3046 -3282 2535 33 7 3 chrX 62933348 62933650 -114040490 - AluY SINE Alu -8 303 1 8927 217 49 26 chrX 62933650 62935169 -114038971 + L1M2 LINE L1 3046 4733 -1595 4268 158 3 4 chrX 62935172 62935864 -114038276 + L1P3 LINE L1 5 695 -5766 7508 31 5 9 chrX 62935897 62936869 -114037271 - L1PA2 LINE L1 -4 6151 5181 1069 244 11 11 chrX 62936969 62937244 -114036896 + L1PB4 LINE L1 5879 6153 -3 22 56 0 0 chrX 62937279 62937315 -114036825 + AT_rich Low_complexity Low_complexity 1 36 0 1410 208 7 7 chrX 62937332 62937625 -114036515 + L1M2 LINE L1 5655 5947 -526 331 140 0 54 chrX 62937612 62937686 -114036454 + L1MA7 LINE L1 5490 5559 -608 * 12966 175 19 16 chrX 62937721 62938102 -114036038 + Tigger1 DNA MER2_type 2 380 -2038 7258 49 0 1 chrX 62938102 62939558 -114034582 + L1PA5 LINE L1 4683 6147 -7 12966 175 19 16 chrX 62939558 62941585 -114032555 + Tigger1 DNA MER2_type 380 2418 0 1826 197 48 40 chrX 62941585 62942087 -114032053 + L1MA7 LINE L1 5786 6291 0 1349 263 57 33 chrX 62942105 62942205 -114031935 + L1ME1 LINE L1 5584 5680 -654 1941 129 0 4 chrX 62942205 62942517 -114031623 + AluSq SINE Alu 6 316 0 1349 263 57 33 chrX 62942517 62942904 -114031236 + L1ME1 LINE L1 5680 6243 -91 200 244 0 0 chrX 62943145 62943186 -114030954 + (TA)n Simple_repeat Simple_repeat 2 42 0 3067 195 61 14 chrX 62943199 62943887 -114030253 + L1MB3 LINE L1 5315 6034 -149 5657 107 25 9 chrX 62943901 62945019 -114029121 - L1PA13 LINE L1 0 6163 5080 846 167 6 6 chrX 62945019 62945181 -114028959 + L1MB3 LINE L1 6021 6182 -1 871 248 84 6 chrX 62945245 62945678 -114028462 + L1M4c LINE L1 2275 2737 -3645 30 0 0 0 chrX 62945700 62945730 -114028410 + AT_rich Low_complexity Low_complexity 1 30 0 870 115 0 0 chrX 62945730 62945860 -114028280 - L1PA13 LINE L1 -8 6155 6026 736 226 67 97 chrX 62945862 62946503 -114027637 + L1M4c LINE L1 2925 3546 -2836 338 354 101 0 chrX 62946506 62946664 -114027476 - L1M4 LINE L1 -5667 875 702 350 274 52 33 chrX 62946666 62946878 -114027262 - L1M4b LINE L1 -5438 1421 1206 235 211 0 42 chrX 62946878 62946949 -114027191 + T-rich Low_complexity Low_complexity 2 69 0 456 242 35 143 chrX 62947023 62947395 -114026745 - L1MEc LINE L1 -5623 773 442 284 246 0 0 chrX 62947539 62947596 -114026544 - L1M4 LINE L1 -1992 4154 4098 5797 220 26 16 chrX 62947610 62949474 -114024666 + L1PBa LINE L1 6 983 -5880 2080 134 3 0 chrX 62949474 62949765 -114024375 + AluSq SINE Alu 1 292 -21 5797 220 26 16 chrX 62949765 62951444 -114022696 + L1PBa LINE L1 983 2643 -4220 1165 135 5 0 chrX 62951452 62951645 -114022495 + L1PB1 LINE L1 7 200 -6663 2777 180 7 15 chrX 62951645 62952183 -114021957 + L1PB1 LINE L1 634 1167 -5696 686 65 0 0 chrX 62952241 62952333 -114021807 - L1PBa LINE L1 -3895 2968 2877 461 127 0 0 chrX 62952342 62952413 -114021727 + L1PB1 LINE L1 4722 4792 -2070 * 5487 168 10 2 chrX 62952411 62954146 -114019994 + L1PB1 LINE L1 5117 6866 -1 4403 237 26 9 chrX 62954155 62955758 -114018382 + L1PBa LINE L1 2687 4321 -2541 4438 178 22 2 chrX 62955768 62957085 -114017055 - L1MA3 LINE L1 -177 6128 4788 16026 98 3 4 chrX 62957085 62960241 -114013899 - L1PA6 LINE L1 -3 6151 3016 6867 246 151 19 chrX 62960242 62960974 -114013166 - L1PA13 LINE L1 -1692 5105 4471 343 0 43 0 chrX 62960974 62961021 -114013119 + (TG)n Simple_repeat Simple_repeat 2 50 0 6867 246 151 19 chrX 62961021 62962411 -114011729 - L1PA13 LINE L1 -2326 4471 3265 6673 76 8 0 chrX 62962411 62963669 -114010471 - L1PA7 LINE L1 -2 6152 4890 6867 246 151 19 chrX 62963669 62965590 -114008550 - L1PA13 LINE L1 -3532 3265 521 7062 40 0 0 chrX 62965633 62966527 -114007613 - L1PA4 LINE L1 0 6155 5262 9274 38 0 103 chrX 62966527 62967600 -114006540 + L1P LINE L1 3927 4812 -1334 2281 71 0 0 chrX 62967600 62967891 -114006249 + L1PA3 LINE L1 5858 6152 -3 9274 38 0 103 chrX 62967891 62968278 -114005862 + L1P LINE L1 4812 5237 -909 1966 225 3 3 chrX 62968283 62968674 -114005466 - L1PA13 LINE L1 -6265 522 132 737 281 81 5 chrX 62968774 62969209 -114004931 - L1M4 LINE L1 -2945 3201 2734 2291 112 59 6 chrX 62969213 62969571 -114004569 - MER51B LTR ERV1 0 377 1 6969 145 48 20 chrX 62969573 62971483 -114002657 - MER51B-int LTR ERV1 -1 7815 5625 305 179 0 0 chrX 62971479 62971535 -114002605 - MER51B-int LTR ERV1 -2188 5349 5294 * 40201 41 22 1 chrX 62971535 62977564 -113996576 - L1PA2 LINE L1 0 6155 1 7713 136 38 15 chrX 62977564 62979337 -113994803 + L1PA7 LINE L1 682 2486 -3975 19137 111 4 6 chrX 62979340 62983184 -113990956 + L1PA7 LINE L1 2585 6469 0 824 104 17 0 chrX 62983194 62983309 -113990831 + AluSg/x SINE Alu 189 305 -7 33394 91 14 33 chrX 62983328 62989599 -113984541 + L1PA6 LINE L1 6 6153 -1 777 202 0 0 chrX 62989603 62989776 -113984364 + L1 LINE L1 4540 4712 -1434 * 1427 243 15 0 chrX 62989773 62990115 -113984025 - L1M1 LINE L1 -6717 848 502 699 124 0 0 chrX 62991683 62991788 -113982352 - MSTA LTR MaLR 0 428 324 687 170 92 0 chrX 62991797 62991938 -113982202 - MSTA LTR MaLR -274 154 1 632 303 28 35 chrX 62992033 62992429 -113981711 + PRIMA41-int LTR ERV1 5363 5755 -2001 1671 251 113 40 chrX 62993229 62993822 -113980318 + MER50 LTR ERV1 79 714 -20 5972 260 55 17 chrX 62993822 62995670 -113978470 + L1MA8 LINE L1 2458 4374 -1772 1832 207 47 26 chrX 62995671 62996163 -113977977 + L1MA8 LINE L1 5788 6289 -2 1743 201 47 33 chrX 62997554 62997899 -113976241 - L1 LINE L1 -2659 3487 3130 690 142 0 0 chrX 62997899 62998005 -113976135 - U6 snRNA snRNA -1 106 1 1743 201 47 33 chrX 62998005 62998211 -113975929 - L1 LINE L1 -3016 3130 2928 1812 177 96 3 chrX 63198213 63198569 -113775571 + MLT2D LTR ERVL 15 403 -11 1988 157 8 62 chrX 63198890 63199279 -113774861 + MLT1B LTR MaLR 1 368 -22 21 0 0 0 chrX 63200419 63200440 -113773700 + AT_rich Low_complexity Low_complexity 1 21 0 420 262 54 53 chrX 63200784 63200956 -113773184 - MIR SINE MIR -55 207 38 369 244 244 37 chrX 63200966 63201183 -113772957 + MIR SINE MIR 1 262 0 1389 297 159 18 chrX 63202005 63203028 -113771112 - L2 LINE L2 -1273 2041 874 1355 150 115 72 chrX 63204331 63204421 -113769719 - Charlie1 DNA MER1_type -9 2752 2667 2232 107 13 0 chrX 63204421 63204720 -113769420 - AluSx SINE Alu -9 303 1 1355 150 115 72 chrX 63204720 63205134 -113769006 - Charlie1 DNA MER1_type -94 2667 2184 21 0 0 0 chrX 63205610 63205631 -113768509 + AT_rich Low_complexity Low_complexity 1 21 0 1545 154 4 33 chrX 63206003 63206275 -113767865 + AluJo SINE Alu 7 270 -42 180 0 0 0 chrX 63206278 63206298 -113767842 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 682 88 0 0 chrX 63206875 63206966 -113767174 - AluSc SINE Alu -218 91 1 1746 145 12 27 chrX 63206966 63207297 -113766843 - L1MA9 LINE L1 -211 6101 5776 354 233 0 0 chrX 63207300 63207386 -113766754 + (TA)n Simple_repeat Simple_repeat 1 86 0 270 0 0 0 chrX 63207386 63207416 -113766724 + (CA)n Simple_repeat Simple_repeat 1 30 0 493 90 142 12 chrX 63207419 63207514 -113766626 - L1P4 LINE L1 -383 5780 5672 240 213 0 0 chrX 63207615 63207676 -113766464 + T-rich Low_complexity Low_complexity 1 61 0 9121 69 11 1 chrX 63208046 63209254 -113764886 + L1P LINE L1 3969 5188 -958 1475 45 0 0 chrX 63209251 63209429 -113764711 - L1P4 LINE L1 -546 5608 5431 * 1084 119 57 0 chrX 63209444 63209638 -113764502 + L1P LINE L1 5186 5390 -756 10225 114 8 21 chrX 63209738 63211500 -113762640 + L1PA11 LINE L1 324 2088 -4373 6106 118 3 2 chrX 63211602 63213382 -113760758 + L1PA11 LINE L1 4740 6489 0 800 175 21 26 chrX 63213591 63213785 -113760355 - L1MA4A LINE L1 -4 6299 6107 24487 106 7 20 chrX 63213895 63217599 -113756541 - L1P LINE L1 -2479 3667 13 1039 299 17 21 chrX 63217597 63218066 -113756074 + L1M4 LINE L1 3376 3842 -2304 * 457 244 0 0 chrX 63218087 63218202 -113755938 + L1M4 LINE L1 3950 4064 -2082 237 316 0 0 chrX 63218208 63218284 -113755856 - L1MCa LINE L1 -1996 4430 4355 1770 292 69 19 chrX 63218349 63219120 -113755020 - L1MCa LINE L1 -2695 3731 2845 3486 73 11 2 chrX 63219120 63219584 -113754556 - L1PA7 LINE L1 -18 6136 5669 1770 292 69 19 chrX 63219584 63220072 -113754068 - L1MCa LINE L1 -3581 2845 2383 8212 183 20 7 chrX 63220091 63222869 -113751271 - L1PB1 LINE L1 -5 6146 3327 2298 250 175 12 chrX 63222860 63224088 -113750052 - L1MCa LINE L1 -4048 2378 951 * 24 0 0 0 chrX 63224538 63224562 -113749578 + AT_rich Low_complexity Low_complexity 1 24 0 551 313 18 31 chrX 63224788 63225020 -113749120 + L1PA16 LINE L1 1 1007 -6567 406 328 42 5 chrX 63225019 63225208 -113748932 + L1PA16 LINE L1 2179 2374 -5207 * 1871 273 42 5 chrX 63225218 63225937 -113748203 + L1PA16 LINE L1 2432 3185 -4399 8421 246 78 6 chrX 63225947 63228845 -113745295 + L1PA16 LINE L1 3786 6908 -696 401 179 0 0 chrX 63228845 63228923 -113745217 - AluJ/FRAM SINE Alu -7 305 228 3413 180 32 9 chrX 63228929 63229257 -113744883 + L1PA16 LINE L1 6902 7221 -383 1839 183 72 15 chrX 63229257 63229662 -113744478 - MSTA LTR MaLR 0 428 1 3413 180 32 9 chrX 63229662 63230017 -113744123 + L1PA16 LINE L1 7221 7601 -3 8699 182 26 28 chrX 63230346 63230875 -113743265 - L1MA1 LINE L1 -8 7713 7184 369 0 0 0 chrX 63230875 63230916 -113743224 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1835 72 128 0 chrX 63230916 63231165 -113742975 - AluY SINE Alu -30 281 1 8699 182 26 28 chrX 63231165 63232851 -113741289 - L1MA1 LINE L1 -536 7185 5500 7004 56 7 0 chrX 63232851 63233952 -113740188 + L1PA7 LINE L1 5045 6151 -3 8699 182 26 28 chrX 63233952 63234846 -113739294 - L1MA1 LINE L1 -2221 5500 4605 958 196 29 5 chrX 63234849 63235053 -113739087 - L1MA1 LINE L1 -7340 225 17 27 49 0 0 chrX 63235248 63235289 -113738851 + AT_rich Low_complexity Low_complexity 1 41 0 305 223 11 0 chrX 63235326 63235420 -113738720 + (TA)n Simple_repeat Simple_repeat 2 96 0 22 56 0 0 chrX 63235457 63235493 -113738647 + AT_rich Low_complexity Low_complexity 1 36 0 443 268 32 25 chrX 63236628 63236785 -113737355 + MER103 DNA DNA 2 159 -7 23 0 0 0 chrX 63237203 63237226 -113736914 + AT_rich Low_complexity Low_complexity 1 23 0 956 316 92 46 chrX 63237603 63238058 -113736082 + MER115 DNA AcHobo 217 692 -1 2119 187 12 22 chrX 63238300 63238807 -113735333 + L1P LINE L1 2761 3262 -2884 453 104 0 2 chrX 63238977 63239053 -113735087 - L1MA4 LINE L1 -185 6117 6038 3859 168 28 3 chrX 63239407 63240152 -113733988 - L1MA3 LINE L1 0 7724 6961 2322 136 0 29 chrX 63240153 63240528 -113733612 + THE1B LTR MaLR 1 364 0 1485 236 56 91 chrX 63240543 63241171 -113732969 + LTR9 LTR ERV1 1 606 -6 4820 135 56 0 chrX 63241175 63241925 -113732215 + THE1B-int LTR MaLR 10 801 -779 4110 215 20 30 chrX 63241929 63243104 -113731036 - L1MA3 LINE L1 -774 6791 5629 5878 275 59 9 chrX 63243107 63243183 -113730957 - L1MA3 LINE L1 -5714 1851 1780 327 25 0 0 chrX 63243183 63243223 -113730917 + (TC)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chrX 63243227 63243261 -113730879 + (TG)n Simple_repeat Simple_repeat 1 34 0 5878 275 59 9 chrX 63243261 63244581 -113729559 - L1MA3 LINE L1 -5787 1778 379 226 219 0 0 chrX 63246398 63246439 -113727701 - L3 LINE CR1 -2 1575 1535 3235 137 14 19 chrX 63246470 63247086 -113727054 - MER4B LTR ERV1 0 779 1 677 307 71 11 chrX 63247171 63247438 -113726702 - L3 LINE CR1 -220 1357 1075 240 35 0 0 chrX 63248207 63248236 -113725904 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2861 80 3 0 chrX 63248723 63249109 -113725031 - L1PA7 LINE L1 -1 6153 5767 1713 228 27 9 chrX 63249223 63249674 -113724466 + L1P4 LINE L1 4693 5151 -995 761 204 0 21 chrX 63249686 63249872 -113724268 + L1P LINE L1 2408 2589 -3557 1626 140 57 17 chrX 63249872 63250287 -113723853 + L1P4 LINE L1 5157 5583 -582 3390 259 68 15 chrX 63250461 63253040 -113721100 - L1PA15-16 LINE L1 -2919 3284 561 2737 157 0 2 chrX 63253781 63254228 -113719912 - L1PA15 LINE L1 0 6165 5720 6571 242 41 49 chrX 63254333 63254663 -113719477 - L1PA13 LINE L1 -2295 4502 4171 2330 110 0 0 chrX 63254663 63254972 -113719168 - AluSc SINE Alu 0 309 1 6571 242 41 49 chrX 63254972 63257914 -113716226 - L1PA13 LINE L1 -2626 4171 1243 4008 209 47 16 chrX 63258027 63258706 -113715434 - L1PA15-16 LINE L1 -4460 2389 1666 375 23 0 0 chrX 63258706 63258750 -113715390 + (TC)n Simple_repeat Simple_repeat 1 44 0 4008 209 47 16 chrX 63258750 63259106 -113715034 - L1PA15-16 LINE L1 -5183 1666 1322 1899 184 49 7 chrX 63259456 63259880 -113714260 - MER61C LTR ERV1 -3 431 2 414 38 0 0 chrX 63259880 63259933 -113714207 - MER61C-int LTR ERV1 -4 5213 5161 24818 108 42 43 chrX 63259977 63260834 -113713306 - MER61C-int LTR ERV1 -35 5182 4325 182 172 188 47 chrX 63260834 63260898 -113713242 - L2 LINE L2 -536 2778 2706 24818 108 42 43 chrX 63260898 63262732 -113711408 - MER61C-int LTR ERV1 -892 4325 2435 2045 159 0 0 chrX 63262732 63263033 -113711107 - AluSx SINE Alu -11 301 1 24818 108 42 43 chrX 63263033 63264618 -113709522 - MER61C-int LTR ERV1 -2782 2435 849 1769 186 94 3 chrX 63264621 63265003 -113709137 - MLT1C LTR MaLR -50 417 1 3081 213 30 4 chrX 63265776 63266531 -113707609 + L1 LINE L1 3530 4304 -1842 * 4667 246 22 39 chrX 63266523 63268646 -113705494 - L1PA12 LINE L1 -3809 3775 866 4929 120 185 88 chrX 63268693 63270108 -113704032 + pTR5 LTR ERV1 276 2295 -143 1517 279 50 22 chrX 63270108 63270645 -113703495 - L1PA12 LINE L1 -7029 552 1 3966 193 33 31 chrX 63270672 63271921 -113702219 - L1MA8 LINE L1 -5 6350 5109 2101 176 66 22 chrX 63271922 63272330 -113701810 - MSTA LTR MaLR -2 426 1 7863 216 12 6 chrX 63272330 63273972 -113700168 - MSTA-int LTR MaLR 0 1651 1 1512 203 96 8 chrX 63273974 63274348 -113699792 - MSTA LTR MaLR -2 426 20 1186 101 0 0 chrX 63274348 63274507 -113699633 + THE1B LTR MaLR 1 159 -205 279 181 0 0 chrX 63274535 63274607 -113699533 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chrX 63274607 63274630 -113699510 + AT_rich Low_complexity Low_complexity 1 23 0 1071 168 9 58 chrX 63274630 63274856 -113699284 + THE1B LTR MaLR 149 363 -1 10530 111 27 13 chrX 63274857 63275709 -113698431 + THE1B-int LTR MaLR 1 886 -694 2328 115 0 3 chrX 63275709 63276022 -113698118 + AluSx SINE Alu 1 312 0 10530 111 27 13 chrX 63276022 63276727 -113697413 + THE1B-int LTR MaLR 886 1580 0 2282 128 33 19 chrX 63276727 63277086 -113697054 + THE1B LTR MaLR 1 364 0 7947 225 29 26 chrX 63277114 63279205 -113694935 - L1MA8 LINE L1 -1097 5113 3012 5207 147 6 1 chrX 63279205 63280690 -113693450 - L1PA16 LINE L1 -1 6165 4685 7947 225 29 26 chrX 63280690 63281096 -113693044 - L1MA8 LINE L1 -3198 3012 2609 433 256 57 18 chrX 63281112 63281339 -113692801 - L1MA8 LINE L1 -4825 1316 1081 802 255 54 65 chrX 63281341 63281710 -113692430 - MLT1A1 LTR MaLR 0 365 1 2730 257 24 86 chrX 63281710 63282695 -113691445 - MLT1A1-int LTR MaLR -1 1734 811 5007 239 21 72 chrX 63282758 63283350 -113690790 - MLT1A1-int LTR MaLR -5 1730 1109 2109 106 13 3 chrX 63283350 63283652 -113690488 - AluSc SINE Alu 0 309 5 5007 239 21 72 chrX 63283652 63284610 -113689530 - MLT1A1-int LTR MaLR -626 1109 260 402 235 0 34 chrX 63284580 63284699 -113689441 - MLT1A1-int LTR MaLR -1256 115 1 * 1326 255 11 50 chrX 63284699 63285079 -113689061 - MLT1A1 LTR MaLR 0 365 1 493 238 20 99 chrX 63285081 63285283 -113688857 - L1M4b LINE L1 -5743 1116 931 180 77 0 0 chrX 63285394 63285420 -113688720 + (TG)n Simple_repeat Simple_repeat 1 26 0 315 342 52 16 chrX 63285682 63285875 -113688265 - L1M4b LINE L1 -6649 210 11 2469 175 13 2 chrX 63285956 63286418 -113687722 + L1PB4 LINE L1 5688 6154 -2 2355 73 0 32 chrX 63287868 63288181 -113685959 - AluY SINE Alu -8 303 1 233 261 197 83 chrX 63288333 63288551 -113685589 - L2 LINE L2 -339 2975 2733 2379 44 0 57 chrX 63288643 63288960 -113685180 + AluY SINE Alu 1 299 -12 432 346 15 7 chrX 63289075 63289211 -113684929 - L2 LINE L2 -556 2758 2622 237 65 0 0 chrX 63289461 63289492 -113684648 + (CA)n Simple_repeat Simple_repeat 2 32 0 491 261 109 0 chrX 63290069 63290207 -113683933 - MIR3 SINE MIR -10 198 46 308 258 82 21 chrX 63291288 63291385 -113682755 - MIR3 SINE MIR -103 105 3 2854 93 3 3 chrX 63292079 63292454 -113681686 + THE1C LTR MaLR 1 375 0 9987 118 33 26 chrX 63292454 63294023 -113680117 + THE1C-int LTR MaLR 1 1580 0 2898 77 3 5 chrX 63294023 63294399 -113679741 + THE1C LTR MaLR 1 375 0 284 313 85 62 chrX 63295014 63295225 -113678915 + L2 LINE L2 687 902 -2412 274 282 51 0 chrX 63295222 63295300 -113678840 - L2 LINE L2 -1 3312 3231 * 180 405 37 24 chrX 63295437 63295733 -113678407 + L2 LINE L2 2571 2870 -444 291 382 130 0 chrX 63296020 63296151 -113677989 + L2 LINE L2 3109 3256 -16 359 202 11 0 chrX 63296240 63296334 -113677806 + GA-rich Low_complexity Low_complexity 2 96 0 790 237 143 29 chrX 63298696 63299004 -113675136 - L1ME3 LINE L1 -8 6154 5812 235 213 49 0 chrX 63301547 63301608 -113672532 - MLT1K LTR MaLR -33 555 492 231 271 47 24 chrX 63301811 63301896 -113672244 - MLT1L LTR MaLR -443 172 86 22 0 0 0 chrX 63302152 63302174 -113671966 + AT_rich Low_complexity Low_complexity 1 22 0 18196 206 17 21 chrX 63302774 63305519 -113668621 - L1PA11 LINE L1 -1 7611 4856 2259 89 7 3 chrX 63305519 63305810 -113668330 - AluY SINE Alu -19 292 1 18196 206 17 21 chrX 63305810 63310001 -113664139 - L1PA11 LINE L1 -2756 4856 1 30 27 0 0 chrX 63310211 63310248 -113663892 + AT_rich Low_complexity Low_complexity 1 37 0 397 344 15 8 chrX 63310294 63310425 -113663715 - MIR3 SINE MIR -5 203 72 216 0 0 0 chrX 63310614 63310638 -113663502 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 407 0 12 chrX 63310642 63310723 -113663417 - MIR3 SINE MIR -127 81 2 180 267 89 33 chrX 63311009 63311099 -113663041 - MIR SINE MIR -51 211 117 345 178 61 1 chrX 63311198 63311429 -113662711 + AluJb SINE Alu 1 277 -25 835 273 56 3 chrX 63311625 63311912 -113662228 + MLT1-int LTR MaLR 27 317 -1054 777 214 138 13 chrX 63311925 63312149 -113661991 + MLT1D LTR MaLR 254 505 0 366 274 24 0 chrX 63312341 63312425 -113661715 - MER5A DNA MER1_type -77 112 27 265 326 81 0 chrX 63312902 63312988 -113661152 + MIR3 SINE MIR 64 156 -52 378 0 0 0 chrX 63313241 63313283 -113660857 + (CA)n Simple_repeat Simple_repeat 2 43 0 828 300 25 4 chrX 63313908 63314148 -113659992 - MIR SINE MIR -2 260 16 1681 164 29 0 chrX 63314164 63314438 -113659702 - AluSx SINE Alu -30 282 1 438 245 20 0 chrX 63314592 63314694 -113659446 - MIR SINE MIR -69 139 36 366 312 32 8 chrX 63315437 63315562 -113658578 - L2 LINE L2 -7 3306 3179 1996 234 41 31 chrX 63315997 63316509 -113657631 - L1MB8 LINE L1 -1 6177 5657 2329 61 6 42 chrX 63316509 63316822 -113657318 - AluY SINE Alu -9 302 1 1996 234 41 31 chrX 63316822 63316923 -113657217 - L1MB8 LINE L1 -521 5657 5558 1558 178 12 45 chrX 63317885 63318217 -113655923 + MSTA-int LTR MaLR 1331 1651 0 2115 174 96 3 chrX 63318223 63318608 -113655532 + MSTA LTR MaLR 8 428 0 1352 211 85 18 chrX 63318608 63318920 -113655220 + MSTA LTR MaLR 95 428 0 4769 208 37 6 chrX 63319093 63320123 -113654017 - Tigger6a DNA MER2_type 0 1083 22 344 325 87 85 chrX 63320451 63320921 -113653219 + L1MEd LINE L1 509 979 -5140 3769 244 65 29 chrX 63321013 63321899 -113652241 + L1M4 LINE L1 6 858 -5684 1415 189 11 0 chrX 63321899 63322164 -113651976 + L1PB4 LINE L1 5888 6155 -1 3769 244 65 29 chrX 63322164 63322396 -113651744 + L1M4 LINE L1 858 1170 -5372 2069 80 14 21 chrX 63322396 63322685 -113651455 + AluSg SINE Alu 1 287 -23 3769 244 65 29 chrX 63322685 63322714 -113651426 + L1M4 LINE L1 1170 1196 -5346 9474 246 43 16 chrX 63322714 63324952 -113649188 - L1PA15 LINE L1 -1 6815 4638 2196 113 7 0 chrX 63324952 63325254 -113648886 - AluSx SINE Alu -8 304 1 9474 246 43 16 chrX 63325254 63329575 -113644565 - L1PA15 LINE L1 -2178 4638 1 1215 262 43 11 chrX 63329585 63330051 -113644089 + L1M4 LINE L1 1191 1671 -4871 229 368 0 13 chrX 63330176 63330252 -113643888 - MIR3 SINE MIR -132 76 2 329 353 53 13 chrX 63331342 63331492 -113642648 - MIR3 SINE MIR -7 201 46 1954 193 47 27 chrX 63331603 63332147 -113641993 + MLT2A2 LTR ERVL 1 554 0 22 0 0 0 chrX 63332280 63332302 -113641838 + AT_rich Low_complexity Low_complexity 1 22 0 462 345 191 13 chrX 63332808 63333190 -113640950 - L2 LINE L2 -4 3309 2860 250 208 19 19 chrX 63333226 63333279 -113640861 - ERVL LTR ERVL -1557 4207 4155 270 336 98 0 chrX 63333421 63333543 -113640597 + ERVL LTR ERVL 2907 3040 -2724 1832 177 11 20 chrX 63333558 63333909 -113640231 + MER7A DNA MER2_type 1 346 0 383 296 37 66 chrX 63334059 63334302 -113639838 + L1M4 LINE L1 4739 4974 -1172 556 215 46 0 chrX 63334470 63334600 -113639540 - L1MC4 LINE L1 -151 7891 7756 1286 125 40 44 chrX 63334611 63334735 -113639405 - L1PA13 LINE L1 -6 6157 6034 2175 82 27 0 chrX 63334735 63335027 -113639113 - AluY SINE Alu -11 300 1 1286 125 40 44 chrX 63335027 63335174 -113638966 - L1PA13 LINE L1 -129 6034 5887 1810 75 29 4 chrX 63335387 63335626 -113638514 - AluSc SINE Alu -64 245 1 1050 128 0 0 chrX 63335626 63335782 -113638358 - L1PA13 LINE L1 -121 6042 5887 * 1354 87 5 0 chrX 63335780 63335964 -113638176 + L1PA13 LINE L1 5696 5880 -283 22 0 0 0 chrX 63337059 63337081 -113637059 + AT_rich Low_complexity Low_complexity 1 22 0 426 291 169 7 chrX 63337332 63337480 -113636660 + MER5B DNA MER1_type 4 175 -3 570 293 123 60 chrX 63338052 63338234 -113635906 - L1M4 LINE L1 -1478 4668 4499 189 0 0 0 chrX 63338234 63338255 -113635885 + (TGG)n Simple_repeat Simple_repeat 1 21 0 570 293 123 60 chrX 63338255 63338672 -113635468 - L1M4 LINE L1 -1647 4499 4031 361 292 89 43 chrX 63338686 63339056 -113635084 - L1M4 LINE L1 -2210 3936 3550 1728 161 0 50 chrX 63339056 63339379 -113634761 + AluJo SINE Alu 5 311 -1 24 67 0 0 chrX 63339478 63339523 -113634617 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chrX 63339633 63339668 -113634472 + AT_rich Low_complexity Low_complexity 1 35 0 1642 198 127 39 chrX 63340521 63340985 -113633155 - LTR22 LTR ERVK -4 505 1 372 356 69 38 chrX 63341364 63341653 -113632487 + L1PBb LINE L1 708 1005 -5845 230 300 11 22 chrX 63341991 63342081 -113632059 + L1PBb LINE L1 1474 1562 -5287 4099 254 34 25 chrX 63342089 63342185 -113631955 + L1PBb LINE L1 1359 1453 -5396 2615 61 0 0 chrX 63342185 63342495 -113631645 + AluY SINE Alu 1 310 -1 4099 254 34 25 chrX 63342495 63343699 -113630441 + L1PBb LINE L1 1453 2751 -4098 12205 241 23 32 chrX 63344588 63345489 -113628651 + L1PB4 LINE L1 1539 2446 -4361 2338 139 17 3 chrX 63345489 63345848 -113628292 + THE1B LTR MaLR 1 364 0 12205 241 23 32 chrX 63345848 63348394 -113625746 + L1PB4 LINE L1 2446 4764 -2043 2387 73 0 17 chrX 63348394 63348695 -113625445 + AluY SINE Alu 2 297 -14 12205 241 23 32 chrX 63348695 63350361 -113623779 + L1PB4 LINE L1 4764 6442 -365 188 238 16 0 chrX 63350361 63350424 -113623716 + (CATA)n Simple_repeat Simple_repeat 3 66 0 255 205 48 6 chrX 63350444 63350610 -113623530 + (TA)n Simple_repeat Simple_repeat 1 173 0 1674 192 19 40 chrX 63350610 63350876 -113623264 + L1PB4 LINE L1 6427 6684 -123 2238 133 43 31 chrX 63350876 63351296 -113622844 - MSTA LTR MaLR -3 425 1 1674 192 19 40 chrX 63351296 63351404 -113622736 + L1PB4 LINE L1 6684 6793 -14 22 35 0 0 chrX 63351524 63351553 -113622587 + AT_rich Low_complexity Low_complexity 1 29 0 2427 132 49 5 chrX 63351696 63352106 -113622034 + MSTA LTR MaLR 1 428 0 1441 138 9 9 chrX 63352461 63352686 -113621454 - AluSx SINE Alu -63 249 25 306 337 86 31 chrX 63353340 63353631 -113620509 + L1M4 LINE L1 2967 3273 -2873 349 365 30 40 chrX 63353881 63354177 -113619963 + HAL1 LINE L1 1 293 -2214 2404 120 8 8 chrX 63354559 63354934 -113619206 + THE1C LTR MaLR 1 375 0 438 231 89 35 chrX 63355033 63355202 -113618938 + HAL1 LINE L1 1415 1592 -915 2025 173 17 5 chrX 63355232 63355637 -113618503 - L1MB1 LINE L1 -2 6166 5757 273 292 100 0 chrX 63355651 63355771 -113618369 + MIR SINE MIR 81 212 -50 21 0 0 0 chrX 63356877 63356898 -113617242 + AT_rich Low_complexity Low_complexity 1 21 0 351 261 61 78 chrX 63357079 63357259 -113616881 - LTR33A LTR ERVL 0 523 347 251 301 233 12 chrX 63357979 63358142 -113615998 - MIR SINE MIR -11 251 53 314 232 0 37 chrX 63358251 63358333 -113615807 + L1MCa LINE L1 1994 2072 -4354 421 346 26 41 chrX 63358487 63358753 -113615387 - MIR SINE MIR 0 262 1 3065 144 27 27 chrX 63359552 63360079 -113614061 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chrX 63362019 63362042 -113612098 + AT_rich Low_complexity Low_complexity 1 23 0 246 266 53 43 chrX 63362312 63362406 -113611734 - MER41E LTR ERV1 -60 452 358 * 919 218 36 75 chrX 63362385 63362692 -113611448 - LTR43 LTR ERV1 -132 470 176 410 277 8 8 chrX 63362891 63363021 -113611119 - LTR43-int LTR ERV1 -1 4797 4668 745 166 49 25 chrX 63363316 63363479 -113610661 - LTR43-int LTR ERV1 -1597 3201 3035 347 42 28 42 chrX 63363577 63363649 -113610491 + (TTTTTG)n Simple_repeat Simple_repeat 2 72 0 2534 222 24 32 chrX 63363785 63364403 -113609737 - LTR43-int LTR ERV1 -1784 3014 2402 276 377 0 0 chrX 63364596 63364702 -113609438 - LTR43-int LTR ERV1 -2503 2295 2190 2358 117 11 3 chrX 63364702 63365054 -113609086 - THE1A LTR MaLR 0 355 1 4805 95 41 0 chrX 63365059 63365743 -113608397 - THE1A-int LTR MaLR -6 1574 863 395 123 4 0 chrX 63365743 63365804 -113608336 - THE1A LTR MaLR -300 55 2 953 240 104 10 chrX 63365807 63366095 -113608045 - LTR43-int LTR ERV1 -2603 2195 1881 2029 133 54 20 chrX 63366636 63366988 -113607152 + THE1B LTR MaLR 1 364 0 11115 115 6 0 chrX 63366988 63368559 -113605581 + THE1B-int LTR MaLR 1 1580 0 2075 113 53 31 chrX 63368560 63368915 -113605225 + THE1B LTR MaLR 2 364 0 260 190 76 51 chrX 63369580 63369659 -113604481 - MER41E LTR ERV1 -76 436 356 * 1265 203 48 14 chrX 63369626 63369921 -113604219 - LTR43 LTR ERV1 -122 480 176 334 329 0 7 chrX 63370260 63370409 -113603731 - L1ME LINE L1 -340 5891 5744 932 208 5 31 chrX 63370436 63370585 -113603555 + MER5A DNA MER1_type 1 145 -44 2453 123 8 3 chrX 63370585 63370958 -113603182 + THE1C LTR MaLR 1 375 0 932 208 5 31 chrX 63370958 63371000 -113603140 + MER5A DNA MER1_type 145 187 -2 245 273 106 62 chrX 63371026 63371253 -113602887 - L1ME LINE L1 -552 5701 5465 792 173 15 8 chrX 63371296 63371429 -113602711 - AluJb SINE Alu -9 303 170 535 306 40 18 chrX 63371467 63371863 -113602277 - L1ME LINE L1 -799 5416 5012 312 321 112 35 chrX 63372174 63372514 -113601626 - L1ME LINE L1 -4579 1817 1452 2097 232 42 78 chrX 63372515 63373335 -113600805 - L1MD2 LINE L1 -15 6227 5438 719 266 65 33 chrX 63373415 63373814 -113600326 - L1MD2 LINE L1 -2522 3624 3213 * 12731 197 12 11 chrX 63373803 63377726 -113596414 - L1MA3 LINE L1 -1 6304 2380 29988 120 17 59 chrX 63377855 63380412 -113593728 - L1PA7 LINE L1 -325 5829 3165 2475 68 0 3 chrX 63380412 63380720 -113593420 - AluY SINE Alu -4 307 1 29988 120 17 59 chrX 63380720 63384253 -113589887 - L1PA7 LINE L1 -2989 3165 12 25 0 0 0 chrX 63384940 63384965 -113589175 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chrX 63385258 63385295 -113588845 + AT_rich Low_complexity Low_complexity 1 37 0 292 335 33 26 chrX 63385733 63385885 -113588255 - MIR SINE MIR -61 201 49 2695 25 0 0 chrX 63386016 63386334 -113587806 + L1PA2 LINE L1 5838 6155 0 22 0 0 0 chrX 63386334 63386356 -113587784 + AT_rich Low_complexity Low_complexity 1 22 0 377 321 106 46 chrX 63386356 63386658 -113587482 - MLT1J2 LTR MaLR -64 386 67 582 303 87 5 chrX 63386701 63386909 -113587231 - MIR SINE MIR -1 261 37 300 231 0 0 chrX 63387443 63387508 -113586632 - L1MC4 LINE L1 -1341 6701 6637 23 33 0 0 chrX 63387698 63387728 -113586412 + AT_rich Low_complexity Low_complexity 1 30 0 1160 203 25 110 chrX 63387732 63388131 -113586009 + MLT1A1 LTR MaLR 1 365 0 248 372 124 0 chrX 63388172 63388285 -113585855 - MIR SINE MIR -57 151 25 5187 159 30 34 chrX 63388298 63389450 -113584690 + L1MA4A LINE L1 5149 6298 -5 22 56 0 0 chrX 63389768 63389804 -113584336 + AT_rich Low_complexity Low_complexity 1 36 0 681 307 22 35 chrX 63390363 63390594 -113583546 - MIR SINE MIR -14 248 21 722 279 21 47 chrX 63391534 63391767 -113582373 - MIR SINE MIR -34 228 2 21 0 0 0 chrX 63391838 63391859 -113582281 + AT_rich Low_complexity Low_complexity 1 21 0 1073 16 0 0 chrX 63391859 63391984 -113582156 - L1PA2 LINE L1 0 6155 6031 21 0 0 0 chrX 63392588 63392609 -113581531 + AT_rich Low_complexity Low_complexity 1 21 0 602 197 68 20 chrX 63393558 63393705 -113580435 - MIR SINE MIR -21 241 88 13310 160 33 16 chrX 63393719 63393833 -113580307 - Tigger1 DNA MER2_type -4 2414 2303 1618 101 0 4 chrX 63393833 63394060 -113580080 + AluSg/x SINE Alu 87 312 0 13310 160 33 16 chrX 63394060 63394281 -113579859 - Tigger1 DNA MER2_type -115 2303 2087 5744 97 39 1 chrX 63394281 63396010 -113578130 + L1PA13 LINE L1 4387 6161 -2 13310 160 33 16 chrX 63396010 63398047 -113576093 - Tigger1 DNA MER2_type -331 2087 2 211 342 25 25 chrX 63398048 63398127 -113576013 - MIR SINE MIR -183 79 1 329 307 64 69 chrX 63398164 63398366 -113575774 + L2 LINE L2 2878 3078 -194 213 39 0 0 chrX 63398474 63398500 -113575640 + (TC)n Simple_repeat Simple_repeat 2 27 0 537 234 70 0 chrX 63398532 63398660 -113575480 + L2 LINE L2 3177 3313 0 1425 171 134 44 chrX 63399152 63399313 -113574827 + THE1C LTR MaLR 1 146 -229 2319 86 3 0 chrX 63399313 63399616 -113574524 + AluY SINE Alu 1 304 -7 1425 171 134 44 chrX 63399616 63399798 -113574342 + THE1C LTR MaLR 146 375 0 8172 148 72 26 chrX 63399798 63401309 -113572831 + THE1C-int LTR MaLR 1 1580 0 1986 165 53 6 chrX 63401309 63401667 -113572473 + THE1C LTR MaLR 1 375 0 26 50 0 0 chrX 63401808 63401848 -113572292 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chrX 63402672 63402700 -113571440 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chrX 63403154 63403200 -113570940 + (TA)n Simple_repeat Simple_repeat 2 47 0 2981 143 99 11 chrX 63403504 63404051 -113570089 + LTR59 LTR ERV1 1 595 -2 7263 32 0 0 chrX 63404211 63405507 -113568633 - L1PA3 LINE L1 0 6155 4838 365 241 66 58 chrX 63405540 63405677 -113568463 + LTR49-int LTR ERV1 299 436 -6162 316 101 60 18 chrX 63405898 63405969 -113568171 + MER4D LTR ERV1 184 244 -535 850 149 0 8 chrX 63405993 63406127 -113568013 + LTR29 LTR ERV1 490 622 0 1460 183 30 67 chrX 63406128 63406854 -113567286 + LTR49-int LTR ERV1 53 2112 -4736 760 190 40 118 chrX 63406851 63407356 -113566784 + LTR49-int LTR ERV1 732 1906 -2974 * 513 187 0 0 chrX 63407476 63407567 -113566573 + LTR49-int LTR ERV1 1381 1471 -4860 3926 180 22 3 chrX 63407567 63408260 -113565880 + MER50 LTR ERV1 1 706 -28 1754 154 39 0 chrX 63408266 63408552 -113565588 + MER4B-int LTR ERV1 1 297 -6908 13230 181 60 35 chrX 63408573 63411160 -113562980 + MER4B-int LTR ERV1 833 3734 -1146 827 361 43 33 chrX 63411430 63412860 -113561280 + MER50-int LTR ERV1 2885 4014 -1032 * 4499 133 3 0 chrX 63412858 63413490 -113560650 + MER50-int LTR ERV1 6564 7197 -8 4027 171 14 15 chrX 63413490 63414202 -113559938 + MER50 LTR ERV1 1 711 -23 1794 224 35 60 chrX 63414204 63414901 -113559239 + MER4B-int LTR ERV1 1856 2288 -4043 445 246 0 7 chrX 63414891 63415024 -113559116 + MER4B-int LTR ERV1 866 2725 -3221 * 303 277 154 8 chrX 63415031 63415161 -113558979 + MER34C LTR ERV1 169 317 -268 1397 184 59 74 chrX 63415163 63415764 -113558376 + MER4B-int LTR ERV1 1199 3624 -2707 1176 188 7 19 chrX 63415735 63416006 -113558134 + MER4B-int LTR ERV1 2945 3212 -3546 * 25 0 0 0 chrX 63416455 63416480 -113557660 + AT_rich Low_complexity Low_complexity 1 25 0 4373 189 35 27 chrX 63416675 63417623 -113556517 + MER4B-int LTR ERV1 3198 4152 -2606 5749 246 21 28 chrX 63417633 63419034 -113555106 + L1M1 LINE L1 29 1419 -6146 13323 206 18 9 chrX 63419051 63422958 -113551182 + L1M1 LINE L1 3207 7150 -573 15264 106 15 1 chrX 63422960 63425079 -113549061 + HERVL-B3 LTR ERVL 3505 5654 0 1831 223 91 45 chrX 63425079 63425609 -113548531 + MLT2B3 LTR ERVL 1 554 0 829 256 18 14 chrX 63425692 63425915 -113548225 - L1M4b LINE L1 -6634 225 2 636 224 48 7 chrX 63425960 63426107 -113548033 - L2 LINE L2 -1 3312 3160 240 268 110 79 chrX 63426171 63426298 -113547842 - MIR SINE MIR -21 241 111 252 350 62 10 chrX 63426300 63426397 -113547743 + L2 LINE L2 3207 3308 -5 1393 244 78 53 chrX 63426415 63426902 -113547238 + MLT1D LTR MaLR 1 499 -6 1344 224 0 4 chrX 63428913 63429158 -113544982 - AluJo SINE Alu -44 268 25 446 239 109 57 chrX 63429184 63429567 -113544573 - L1MEc LINE L1 -3884 2762 2353 7830 16 0 0 chrX 63429595 63430527 -113543613 - L1PA3 LINE L1 -9 6146 5215 7937 25 0 0 chrX 63430527 63431475 -113542665 + L1PA3 LINE L1 4258 5205 -941 604 246 45 5 chrX 63431735 63431934 -113542206 - L1MEc LINE L1 -4923 1723 1517 3544 173 84 0 chrX 63431943 63432655 -113541485 - L1PA16 LINE L1 -9 6157 5386 3321 225 36 33 chrX 63432659 63433672 -113540468 - L1MEc LINE L1 -5011 1531 515 523 194 47 0 chrX 63433740 63433869 -113540271 - L1MEc LINE L1 -6405 137 3 18150 201 36 13 chrX 63433994 63436298 -113537842 - L1 LINE L1 -1411 6154 3903 3337 112 16 10 chrX 63436298 63436806 -113537334 - MER9 LTR ERVK 0 511 1 18150 201 36 13 chrX 63436806 63437659 -113536481 - L1 LINE L1 -3662 3903 3071 2010 140 0 3 chrX 63437659 63437951 -113536189 + AluSg SINE Alu 1 291 -19 18150 201 36 13 chrX 63437951 63440525 -113533615 - L1 LINE L1 -4494 3071 279 2091 155 37 11 chrX 63440525 63440880 -113533260 - THE1B LTR MaLR 0 364 1 18150 201 36 13 chrX 63440880 63441155 -113532985 - L1 LINE L1 -7286 279 12 441 241 9 9 chrX 63441164 63441280 -113532860 - L1M4 LINE L1 -1147 5235 5120 776 229 80 90 chrX 63441287 63441504 -113532636 - L1M4 LINE L1 -4987 1397 1179 2423 99 0 0 chrX 63441504 63441806 -113532334 + AluSg SINE Alu 1 302 -8 776 229 80 90 chrX 63441806 63442187 -113531953 - L1M4 LINE L1 -5205 1179 805 469 266 57 64 chrX 63442943 63443090 -113531050 - L1M3 LINE L1 -573 5607 5461 1755 181 3 7 chrX 63443090 63443389 -113530751 + AluJb SINE Alu 6 303 -9 469 266 57 64 chrX 63443389 63443538 -113530602 - L1M3 LINE L1 -719 5461 5313 * 7445 226 27 23 chrX 63443531 63446593 -113527547 - L1PA15 LINE L1 0 6165 3103 * 9545 138 61 10 chrX 63446583 63447653 -113526487 - L1PBa LINE L1 -3853 3009 1995 2368 94 0 0 chrX 63447653 63447960 -113526180 - AluSc SINE Alu -2 307 1 9545 138 61 10 chrX 63447960 63449609 -113524531 - L1PBa LINE L1 -4867 1995 5 5064 225 30 12 chrX 63449623 63450397 -113523743 - L1 LINE L1 -2572 4993 4199 2222 104 7 13 chrX 63450397 63450706 -113523434 - AluSg SINE Alu -1 309 3 5064 225 30 12 chrX 63450706 63451330 -113522810 - L1 LINE L1 -3366 4199 3588 3820 137 65 25 chrX 63451332 63452076 -113522064 - L1 LINE L1 -4077 3488 2716 * 42609 33 21 1 chrX 63452070 63458139 -113516001 - L1PA2 LINE L1 0 6155 3 1116 141 16 0 chrX 63458156 63458347 -113515793 - L1 LINE L1 -4832 2733 2540 * 8283 234 22 26 chrX 63458335 63459319 -113514821 - L1P4 LINE L1 -668 6148 5162 1959 136 53 14 chrX 63459319 63459680 -113514460 - THE1C LTR MaLR 0 375 1 8283 234 22 26 chrX 63459680 63461213 -113512927 - L1P4 LINE L1 -1654 5162 3641 4004 285 27 26 chrX 63461241 63462772 -113511368 - L1P4 LINE L1 -3379 3418 1890 2250 99 10 0 chrX 63462772 63463076 -113511064 - AluSp SINE Alu -6 307 1 4004 285 27 26 chrX 63463076 63463752 -113510388 - L1P4 LINE L1 -4907 1890 1216 1806 137 0 14 chrX 63463752 63464066 -113510074 - AluSx SINE Alu 0 318 9 4004 285 27 26 chrX 63464066 63464822 -113509318 - L1P4 LINE L1 -5581 1216 1 26 0 0 0 chrX 63465748 63465774 -113508366 + AT_rich Low_complexity Low_complexity 1 26 0 302 278 152 13 chrX 63465779 63465930 -113508210 - MIR SINE MIR -73 189 18 410 171 0 0 chrX 63465944 63466014 -113508126 - MER8 DNA MER2_type 0 239 170 * 515 173 87 0 chrX 63466011 63466115 -113508025 + Tigger2 DNA MER2_type 2280 2392 -326 837 298 22 35 chrX 63466136 63466448 -113507692 - MER87 LTR ERV1 -23 518 211 1780 190 15 3 chrX 63466617 63466943 -113507197 + Tigger2 DNA MER2_type 2389 2718 0 963 302 141 24 chrX 63467045 63467499 -113506641 - MLT1J LTR MaLR -4 507 1 1636 172 0 0 chrX 63467710 63467972 -113506168 + MER54A LTR ERVL 1 262 -639 332 323 35 55 chrX 63469405 63469606 -113504534 + MIR SINE MIR 20 216 -46 273 364 0 0 chrX 63470468 63470567 -113503573 + L2 LINE L2 3204 3302 -11 519 286 56 6 chrX 63470940 63471118 -113503022 + MIR SINE MIR 5 191 -71 832 296 53 72 chrX 63472730 63473403 -113500737 + L2 LINE L2 2629 3308 -5 623 229 0 0 chrX 63473558 63473680 -113500460 + FLAM_C SINE Alu 4 125 -18 23 54 0 0 chrX 63474281 63474318 -113499822 + AT_rich Low_complexity Low_complexity 1 37 0 46 62 0 0 chrX 63474410 63474491 -113499649 + AT_rich Low_complexity Low_complexity 1 81 0 7741 40 0 1 chrX 63474491 63476206 -113497934 - L1PA3 LINE L1 -3 6152 4438 6115 97 4 0 chrX 63476462 63477489 -113496651 - L1PA11 LINE L1 -4 6170 5137 1853 151 7 3 chrX 63477693 63477997 -113496143 - AluSx SINE Alu -7 305 1 268 271 62 11 chrX 63478553 63478721 -113495419 + L1M4b LINE L1 22 500 -6355 4784 157 6 7 chrX 63478751 63479562 -113494578 - L1PB3 LINE L1 -2 6152 5343 874 323 36 18 chrX 63479564 63479954 -113494186 - L1MEc LINE L1 -5975 421 25 502 310 78 16 chrX 63480322 63480564 -113493576 - L1MEd LINE L1 -5859 260 4 485 333 147 15 chrX 63480852 63481315 -113492825 + L2 LINE L2 2012 2535 -779 22 56 0 0 chrX 63481375 63481411 -113492729 + AT_rich Low_complexity Low_complexity 1 36 0 713 322 26 26 chrX 63481814 63482058 -113492082 - MLT1I LTR MaLR -2 407 161 1684 159 162 26 chrX 63482058 63482435 -113491705 + MSTA LTR MaLR 1 428 0 713 322 26 26 chrX 63482435 63482494 -113491646 - MLT1I LTR MaLR -247 162 104 291 223 23 123 chrX 63483161 63483291 -113490849 + LTR4 LTR ERV1 1 117 -479 706 226 31 59 chrX 63483545 63483832 -113490308 + LTR4 LTR ERV1 318 596 0 1695 229 95 23 chrX 63484305 63484777 -113489363 + L1MD2 LINE L1 5852 6357 -2 232 233 0 33 chrX 63484899 63484959 -113489181 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 318 111 0 19 chrX 63485553 63485607 -113488533 - MSTB1 LTR MaLR 0 432 380 13445 185 32 34 chrX 63485617 63489417 -113484723 - L1MA1 LINE L1 -1 7720 3914 1779 177 0 3 chrX 63489417 63489711 -113484429 - AluSx SINE Alu -19 293 1 13445 185 32 34 chrX 63489711 63492966 -113481174 - L1MA1 LINE L1 -3807 3914 13 1558 238 25 17 chrX 63492962 63493441 -113480699 - L1 LINE L1 -3011 4554 4072 * 17062 187 34 16 chrX 63493423 63493889 -113480251 - L1 LINE L1 -4105 3460 3004 3270 26 0 0 chrX 63493889 63494275 -113479865 - L1PA2 LINE L1 0 6155 5770 17062 187 34 16 chrX 63494275 63497195 -113476945 - L1 LINE L1 -4561 3004 15 5315 259 101 11 chrX 63497193 63499320 -113474820 - L1M4 LINE L1 -814 5332 3015 * 14696 197 22 14 chrX 63499501 63504444 -113469696 - L1PA14 LINE L1 0 7599 2609 1644 198 7 13 chrX 63504444 63504747 -113469393 - AluSx SINE Alu -11 301 1 14696 197 22 14 chrX 63504747 63504821 -113469319 - L1PA14 LINE L1 -4990 2609 2537 498 115 238 25 chrX 63504865 63504987 -113469153 - MER4C LTR ERV1 -18 447 300 1407 157 49 44 chrX 63505119 63505463 -113468677 - MER4A LTR ERV1 -318 346 1 343 242 0 118 chrX 63505478 63505631 -113468509 - MER4A-int LTR ERV1 -14 6584 6450 243 200 20 0 chrX 63505686 63505736 -113468404 + GA-rich Low_complexity Low_complexity 2 52 0 1589 328 34 25 chrX 63506087 63507116 -113467024 - LTR17-int LTR ERV1 -452 6670 5633 573 319 48 55 chrX 63507448 63508140 -113466000 - LTR17-int LTR ERV1 -1784 2863 2177 252 323 0 0 chrX 63508828 63508924 -113465216 - LTR17-int LTR ERV1 -3389 5589 5494 22 35 0 0 chrX 63511486 63511515 -113462625 + AT_rich Low_complexity Low_complexity 1 29 0 259 286 38 57 chrX 63512899 63513004 -113461136 - LTR17-int LTR ERV1 -6264 494 392 723 205 177 41 chrX 63513049 63513084 -113461056 - LTR17-int LTR ERV1 -5926 672 643 432 0 0 0 chrX 63513084 63513132 -113461008 + (CA)n Simple_repeat Simple_repeat 2 49 0 723 205 177 41 chrX 63513132 63513401 -113460739 - LTR17-int LTR ERV1 -5955 643 412 6416 58 1 0 chrX 63513401 63514180 -113459960 - LTR17 LTR ERV1 0 780 1 723 205 177 41 chrX 63514180 63514395 -113459745 - LTR17-int LTR ERV1 -6186 412 1 358 169 323 25 chrX 63514418 63514619 -113459521 - MER4C LTR ERV1 -20 445 185 1332 158 49 52 chrX 63514677 63515024 -113459116 - MER4A LTR ERV1 -318 346 1 14085 176 6 7 chrX 63515024 63517487 -113456653 - L1PA12 LINE L1 -5060 2521 62 878 190 7 120 chrX 63517492 63517776 -113456364 - LTR9 LTR ERV1 -360 252 1 7628 233 31 13 chrX 63517776 63521173 -113452967 + L1M2 LINE L1 1034 4490 -2358 24 67 0 0 chrX 63521415 63521460 -113452680 + AT_rich Low_complexity Low_complexity 1 45 0 3502 147 38 16 chrX 63521647 63522336 -113451804 - L1MA2 LINE L1 -1 7722 7019 10286 204 31 23 chrX 63522336 63524866 -113449274 - L1MA2 LINE L1 -1172 6393 3885 261 0 0 0 chrX 63524866 63524895 -113449245 + (TA)n Simple_repeat Simple_repeat 1 29 0 10286 204 31 23 chrX 63524895 63525633 -113448507 - L1MA2 LINE L1 -3680 3885 3088 290 96 0 19 chrX 63525633 63525685 -113448455 + (TA)n Simple_repeat Simple_repeat 2 52 0 10286 204 31 23 chrX 63525685 63526109 -113448031 - L1MA2 LINE L1 -4477 3088 2669 8528 51 5 0 chrX 63526109 63527953 -113446187 - L1PA5 LINE L1 -2 6152 4294 6956 55 3 0 chrX 63527953 63528829 -113445311 + L1PA5 LINE L1 5272 6152 -2 12207 109 11 3 chrX 63528830 63531469 -113442671 + L1PA7 LINE L1 3499 6153 -1 9009 206 29 19 chrX 63531488 63533265 -113440875 - L1MA2 LINE L1 -5230 2335 535 2517 57 3 0 chrX 63533265 63533564 -113440576 + AluY SINE Alu 1 300 -11 9009 206 29 19 chrX 63533564 63533696 -113440444 - L1MA2 LINE L1 -7030 535 406 1551 194 17 57 chrX 63533699 63534106 -113440034 + L1MA4A LINE L1 5400 5790 -513 2128 157 32 12 chrX 63534108 63534515 -113439625 + L1MA4A LINE L1 5876 6290 -13 1313 251 49 3 chrX 63534534 63534881 -113439259 + MLT1A1 LTR MaLR 1 363 -2 2457 123 25 27 chrX 63534884 63535291 -113438849 + MLT2A2 LTR ERVL 1 406 -47 240 35 0 0 chrX 63535305 63535334 -113438806 + (TA)n Simple_repeat Simple_repeat 2 30 0 323 156 0 78 chrX 63535410 63535446 -113438694 + MLT2A2 LTR ERVL 383 411 -42 351 0 0 0 chrX 63535446 63535485 -113438655 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 323 156 0 78 chrX 63535485 63535525 -113438615 + MLT2A2 LTR ERVL 411 453 0 39291 94 15 2 chrX 63535525 63541108 -113433032 + HERVL-A2-A1 LTR ERVL 1 5654 0 3228 97 2 5 chrX 63541108 63541553 -113432587 + MLT2A1 LTR ERVL 1 444 0 7618 209 116 32 chrX 63541560 63542491 -113431649 - L1MCa LINE L1 -3286 3140 2289 2134 111 0 7 chrX 63542491 63542797 -113431343 - AluSg SINE Alu -6 304 1 7618 209 116 32 chrX 63542797 63543594 -113430546 - L1MCa LINE L1 -4137 2289 1561 1943 96 6 114 chrX 63543594 63543926 -113430214 + AluSg SINE Alu 1 296 -14 7618 209 116 32 chrX 63543926 63545072 -113429068 - L1MCa LINE L1 -4865 1561 19 191 295 33 0 chrX 63545073 63545134 -113429006 - MER5B DNA MER1_type -113 65 3 1570 184 42 34 chrX 63545265 63545650 -113428490 - MLT1B LTR MaLR 0 390 3 769 239 112 2 chrX 63546436 63547025 -113427115 + LTR50 LTR ERVL 6 787 -8 2066 206 62 11 chrX 63547106 63547655 -113426485 - L1MB8 LINE L1 -2 6176 5600 1688 218 51 5 chrX 63547667 63548062 -113426078 - MER68 LTR ERV1 -149 413 1 4770 228 54 28 chrX 63548091 63550858 -113423282 - HERVL68 LTR ERVL -21 3016 58 1737 248 10 43 chrX 63550944 63551427 -113422713 - MER68 LTR ERV1 -14 548 82 2574 237 99 24 chrX 63551435 63551597 -113422543 - L1MB8 LINE L1 -743 5403 5255 2112 111 0 3 chrX 63551597 63551885 -113422255 + AluSq SINE Alu 11 297 -16 2574 237 99 24 chrX 63551885 63552829 -113421311 - L1MB8 LINE L1 -891 5255 4229 264 224 59 35 chrX 63552879 63552964 -113421176 - MER74B LTR ERVL -494 128 42 22 0 0 0 chrX 63553295 63553317 -113420823 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chrX 63553473 63553502 -113420638 + AT_rich Low_complexity Low_complexity 1 29 0 1508 164 46 0 chrX 63553502 63553806 -113420334 - L1MA3 LINE L1 -4 6301 5984 16324 178 17 33 chrX 63553811 63555657 -113418483 + L1PA14 LINE L1 1775 3650 -3949 2156 109 9 40 chrX 63555657 63555979 -113418161 + AluSq SINE Alu 1 312 -1 16324 178 17 33 chrX 63555979 63557507 -113416633 + L1PA14 LINE L1 3650 5202 -2397 300 27 0 0 chrX 63557507 63557544 -113416596 + (CA)n Simple_repeat Simple_repeat 2 38 0 16324 178 17 33 chrX 63557544 63560092 -113414048 + L1PA14 LINE L1 5202 7598 -1 2904 214 19 26 chrX 63560096 63561197 -113412943 - L1MA3 LINE L1 -646 5666 4561 1442 244 25 14 chrX 63561197 63561558 -113412582 + MLT1A1 LTR MaLR 1 365 0 1819 238 53 64 chrX 63561558 63562394 -113411746 + MLT1A1-int LTR MaLR 1 802 -701 737 278 38 78 chrX 63562426 63562771 -113411369 + MLT1A1-int LTR MaLR 789 1119 -616 3290 283 103 25 chrX 63562773 63564079 -113410061 + MLT1A1-int LTR MaLR 321 1728 -7 1579 223 14 25 chrX 63564085 63564452 -113409688 + MLT1A1 LTR MaLR 1 363 -2 12283 187 26 9 chrX 63564455 63566196 -113407944 + L1M1 LINE L1 703 2493 -5072 2396 95 0 0 chrX 63566196 63566500 -113407640 + AluSq SINE Alu 1 304 -9 12283 187 26 9 chrX 63566500 63567063 -113407077 + L1M1 LINE L1 2493 3045 -4520 10605 234 63 11 chrX 63567086 63570217 -113403923 + L1PA13 LINE L1 1 3315 -3482 236 213 0 0 chrX 63570236 63570283 -113403857 + L1MC4 LINE L1 6658 6704 -1338 189 171 0 0 chrX 63570283 63570318 -113403822 + (CATA)n Simple_repeat Simple_repeat 4 38 0 228 226 71 0 chrX 63570321 63570405 -113403735 - L1MC4 LINE L1 -1339 6703 6614 262 200 22 22 chrX 63570421 63570511 -113403629 + L1MC4 LINE L1 6614 6703 -1339 225 239 34 11 chrX 63570515 63570603 -113403537 + L1MC4 LINE L1 6614 6703 -1339 180 217 0 0 chrX 63570609 63570655 -113403485 + (TA)n Simple_repeat Simple_repeat 2 47 0 997 271 7 3 chrX 63570655 63570965 -113403175 + L1PA13 LINE L1 3330 3640 -3157 1197 276 60 43 chrX 63570994 63571462 -113402678 + L1PBa LINE L1 3 478 -6385 4497 62 27 13 chrX 63571463 63572486 -113401654 - MER11A LTR ERVK 0 1266 1 3983 254 25 17 chrX 63572487 63574103 -113400037 + L1PBa LINE L1 475 1639 -5224 * 5649 201 55 15 chrX 63574100 63576831 -113397309 + L1PBb LINE L1 1236 4086 -2776 2379 100 0 0 chrX 63576831 63577142 -113396998 + AluY SINE Alu 1 311 0 5649 201 55 15 chrX 63577142 63577279 -113396861 + L1PBb LINE L1 4086 4216 -2646 * 8685 204 26 5 chrX 63577276 63578821 -113395319 + L1PB2 LINE L1 3 1581 -6000 3480 171 20 26 chrX 63578824 63579603 -113394537 + L1PB2 LINE L1 2391 3179 -4405 * 11817 198 12 13 chrX 63579587 63582186 -113391954 + L1P LINE L1 4191 6788 -796 732 99 16 0 chrX 63582186 63582307 -113391833 - L1P4 LINE L1 -681 5480 5358 574 185 0 0 chrX 63582302 63582394 -113391746 - L1P LINE L1 -2275 3871 3780 * 7395 100 5 19 chrX 63582406 63583478 -113390662 + MER11C LTR ERVK 1 1057 -14 4794 202 9 1 chrX 63583496 63584976 -113389164 + L1PB2 LINE L1 6131 7589 0 9646 185 25 36 chrX 63584981 63585350 -113388790 + L1PA13 LINE L1 2995 3366 -2797 2089 187 21 19 chrX 63585350 63585777 -113388363 - MSTA LTR MaLR 0 428 1 9646 185 25 36 chrX 63585777 63587786 -113386354 + L1PA13 LINE L1 3366 5320 -843 21336 35 1 0 chrX 63587786 63591151 -113382989 + L1PA3 LINE L1 2787 6155 0 9646 185 25 36 chrX 63591151 63591986 -113382154 + L1PA13 LINE L1 5320 6163 0 2948 215 27 4 chrX 63591984 63593655 -113380485 + L1MB5 LINE L1 3035 4853 -2712 * 1101 232 46 20 chrX 63593661 63594006 -113380134 - L1M4 LINE L1 -1150 4996 4643 892 248 5 0 chrX 63594029 63594243 -113379897 - L1PB4 LINE L1 -2 6154 5940 3879 193 81 29 chrX 63594330 63595184 -113378956 + MER4D LTR ERV1 6 903 0 2727 269 66 23 chrX 63595213 63596567 -113377573 - L1M4 LINE L1 -1620 4526 3115 2098 185 36 32 chrX 63596575 63597072 -113377068 + L1MB1 LINE L1 5653 6151 -17 22 0 0 0 chrX 63597100 63597122 -113377018 + AT_rich Low_complexity Low_complexity 1 22 0 1565 199 228 0 chrX 63597537 63597959 -113376181 - L1MB3 LINE L1 -41 6142 5625 1221 207 6 19 chrX 63597966 63598285 -113375855 - L1MB3 LINE L1 -1468 4678 4364 1888 163 42 33 chrX 63598340 63598701 -113375439 + THE1B LTR MaLR 1 364 0 339 154 0 0 chrX 63598701 63598753 -113375387 + THE1B-int LTR MaLR 1 52 -1528 876 261 63 15 chrX 63598755 63599089 -113375051 + L1MB5 LINE L1 5330 5679 -1886 400 92 12 0 chrX 63599160 63599226 -113374914 + Alu SINE Alu 1 50 -249 3038 245 26 18 chrX 63599237 63600470 -113373670 + L1MB5 LINE L1 6341 7585 -8 26 50 0 0 chrX 63600470 63600510 -113373630 + AT_rich Low_complexity Low_complexity 1 40 0 4059 181 41 2 chrX 63600512 63601315 -113372825 - L1MA5 LINE L1 -6 6294 5461 8783 204 17 7 chrX 63601329 63601675 -113372465 - L1PB1 LINE L1 -7 6144 5803 477 0 0 0 chrX 63601675 63601728 -113372412 + (TA)n Simple_repeat Simple_repeat 1 53 0 8783 204 17 7 chrX 63601728 63604439 -113369701 - L1PB1 LINE L1 -348 5803 3055 2935 213 29 31 chrX 63604474 63604731 -113369409 - L1MB3 LINE L1 -1777 4369 4113 7575 91 19 9 chrX 63604731 63606581 -113367559 + L1PA7 LINE L1 4281 6146 -8 2935 213 29 31 chrX 63606581 63607125 -113367015 - L1MB3 LINE L1 -2033 4113 3570 4555 164 53 5 chrX 63607126 63607505 -113366635 - L1PB1 LINE L1 0 6151 5792 237 33 0 0 chrX 63607505 63607535 -113366605 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 383 67 0 17 chrX 63607534 63607594 -113366546 + (TA)n Simple_repeat Simple_repeat 1 59 0 4555 164 53 5 chrX 63607535 63608094 -113366046 - L1PB1 LINE L1 -359 5792 5254 1113 228 16 46 chrX 63608098 63608316 -113365824 + L1 LINE L1 2982 3182 -2964 2262 79 0 10 chrX 63608316 63608635 -113365505 + AluY SINE Alu 1 311 0 1113 228 16 46 chrX 63608635 63608850 -113365290 + L1 LINE L1 3182 3402 -2744 366 239 104 31 chrX 63608829 63608977 -113365163 + L1 LINE L1 4486 4648 -1498 * 3553 111 53 85 chrX 63608977 63609673 -113364467 + L1PA11 LINE L1 5501 6174 0 366 239 104 31 chrX 63609673 63609687 -113364453 + L1 LINE L1 4648 4660 -1486 2169 101 0 3 chrX 63609689 63609975 -113364165 + AluSc SINE Alu 1 285 -24 17210 116 6 14 chrX 63609975 63612464 -113361676 + L1PA8 LINE L1 1856 4323 -1823 1814 120 0 0 chrX 63612464 63612705 -113361435 - AluSg SINE Alu -66 244 4 17210 116 6 14 chrX 63612705 63612926 -113361214 + L1PA8 LINE L1 4323 4544 -1602 * 42565 36 21 1 chrX 63612909 63618939 -113355201 + L1PA2 LINE L1 1 6155 0 6285 102 3 2 chrX 63618939 63620599 -113353541 + L1PA8 LINE L1 4507 6172 0 1013 193 18 5 chrX 63620628 63620851 -113353289 + L1MB3 LINE L1 5925 6150 -33 * 2825 165 20 7 chrX 63620847 63621386 -113352754 - L1MA4 LINE L1 -395 5905 5360 2027 194 12 7 chrX 63621372 63621789 -113352351 + L1MA4 LINE L1 5862 6280 -20 * 226 106 0 21 chrX 63621855 63621902 -113352238 + L1MB3 LINE L1 6137 6182 -1 680 202 14 4 chrX 63621945 63621970 -113352170 - L1M3 LINE L1 -679 5492 5469 738 101 0 0 chrX 63621970 63622079 -113352061 - L1PA13 LINE L1 -8 6155 6047 3191 153 50 30 chrX 63622079 63622753 -113351387 - L1MA6 LINE L1 -11 6289 5602 680 202 14 4 chrX 63622753 63622898 -113351242 - L1M3 LINE L1 -701 5470 5323 6130 108 51 8 chrX 63622956 63624212 -113349928 - L1PA14 LINE L1 -9 6152 4872 336 173 140 40 chrX 63624224 63624374 -113349766 - L1M3 LINE L1 -2980 3166 3002 3823 194 18 72 chrX 63624388 63625512 -113348628 - L1MA9 LINE L1 -50 6262 5198 523 254 44 70 chrX 63625528 63625800 -113348340 - L1MA9 LINE L1 -38 6274 6010 * 849 229 22 18 chrX 63625757 63625980 -113348160 + L1MA9 LINE L1 5802 6025 -287 4711 233 35 15 chrX 63625985 63626628 -113347512 - L1MA9 LINE L1 -936 5210 4582 1469 215 26 0 chrX 63626628 63626977 -113347163 + MER46B DNA MER2_type 1 233 -3 4711 233 35 15 chrX 63626977 63627636 -113346504 - L1MA9 LINE L1 -1564 4582 3881 4029 156 11 31 chrX 63627645 63628393 -113345747 - L1PA13 LINE L1 0 6163 5431 2787 256 8 38 chrX 63628393 63629384 -113344756 - L1PA13 LINE L1 -2913 3884 2924 3965 265 25 12 chrX 63629412 63630757 -113343383 - L1PA13 LINE L1 -4231 2566 1182 1207 318 11 39 chrX 63630851 63631288 -113342852 - L1PA13 LINE L1 -6042 745 321 329 288 0 0 chrX 63631318 63631398 -113342742 - L1PA13 LINE L1 -6459 328 249 314 271 146 10 chrX 63631938 63632034 -113342106 + L2 LINE L2 3203 3311 -2 731 290 44 4 chrX 63634042 63634309 -113339831 + L1MC4a LINE L1 5314 5609 -633 509 245 29 0 chrX 63634328 63634430 -113339710 + L1MA3 LINE L1 179 283 -7282 3075 108 0 59 chrX 63634476 63634632 -113339508 + L1PB1 LINE L1 5650 5814 -337 434 18 18 0 chrX 63634632 63634687 -113339453 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 3075 108 0 59 chrX 63634687 63635059 -113339081 + L1PB1 LINE L1 5814 6147 -4 262 245 0 0 chrX 63635161 63635214 -113338926 - L2 LINE L2 -1323 1991 1939 16726 188 43 16 chrX 63635219 63639207 -113334933 + L1MA3 LINE L1 423 4533 -3032 5406 190 14 13 chrX 63639204 63639402 -113334738 + L1MA3 LINE L1 5547 5743 -1981 * 2064 73 32 76 chrX 63639402 63639596 -113334544 - AluY SINE Alu -10 301 125 204 40 0 0 chrX 63639596 63639621 -113334519 + (TG)n Simple_repeat Simple_repeat 2 26 0 2064 73 32 76 chrX 63639621 63639741 -113334399 - AluY SINE Alu -186 125 1 5406 190 14 13 chrX 63639741 63641697 -113332443 + L1MA3 LINE L1 5743 7705 -19 525 203 33 82 chrX 63641818 63642000 -113332140 + L1MC4a LINE L1 5712 5884 -1924 3760 91 2 51 chrX 63642001 63642553 -113331587 + LTR17 LTR ERV1 256 780 0 48180 54 10 9 chrX 63642553 63648566 -113325574 + HERV17 LTR ERV1 1 6019 -2607 299 51 0 0 chrX 63648559 63648598 -113325542 + HERV17 LTR ERV1 7510 7548 -1078 * 2414 58 0 0 chrX 63648588 63648880 -113325260 + HERV17 LTR ERV1 8335 8626 0 1239 39 58 0 chrX 63648880 63649035 -113325105 + LTR17 LTR ERV1 1 164 -616 180 274 48 48 chrX 63649035 63649119 -113325021 - MIR SINE MIR -141 121 38 530 47 0 116 chrX 63649119 63649205 -113324935 + LTR17 LTR ERV1 249 324 -456 323 261 50 56 chrX 63649210 63649371 -113324769 + L1MC4a LINE L1 5877 6036 -1772 2441 68 3 0 chrX 63649547 63649842 -113324298 + AluSp SINE Alu 1 296 -17 1789 155 0 21 chrX 63650460 63650802 -113323338 - AluSx SINE Alu 0 336 1 943 155 11 142 chrX 63651901 63652170 -113321970 + L1PA16 LINE L1 5127 5323 -843 2210 60 0 0 chrX 63652170 63652437 -113321703 - AluY SINE Alu -44 267 1 943 155 11 142 chrX 63652437 63652574 -113321566 + L1PA16 LINE L1 5323 5476 -690 11388 229 40 24 chrX 63652582 63654040 -113320100 - L1PB3 LINE L1 -1 6869 5435 1781 152 168 8 chrX 63654040 63654409 -113319731 - MSTA LTR MaLR 0 428 1 11388 229 40 24 chrX 63654409 63657138 -113317002 - L1PB3 LINE L1 -1435 5435 2749 1933 153 30 35 chrX 63657138 63657504 -113316636 + THE1B LTR MaLR 1 364 0 11163 117 1 1 chrX 63657505 63659083 -113315057 + THE1B-int LTR MaLR 3 1580 0 2140 140 27 30 chrX 63659083 63659448 -113314692 + THE1B LTR MaLR 1 364 0 11388 229 40 24 chrX 63659448 63661724 -113312416 - L1PB3 LINE L1 -4120 2750 661 1814 275 32 25 chrX 63661861 63662541 -113311599 - L1PB3 LINE L1 -6176 687 3 3712 161 32 18 chrX 63662550 63663235 -113310905 + L1PA16 LINE L1 5463 6157 -9 2279 169 28 5 chrX 63663246 63663672 -113310468 + L1PA16 LINE L1 5722 6157 -9 2081 113 7 0 chrX 63663961 63664277 -113309863 + AluSx SINE Alu 1 318 0 203 111 0 44 chrX 63664314 63664359 -113309781 + (CATA)n Simple_repeat Simple_repeat 1 43 0 193 279 228 0 chrX 63664584 63664663 -113309477 - L2 LINE L2 -5 3308 3212 453 127 0 0 chrX 63664663 63664742 -113309398 - L1MA10 LINE L1 0 6334 6256 3675 208 39 16 chrX 63664742 63665700 -113308440 - L1MB1 LINE L1 -7 6182 5145 3629 90 12 0 chrX 63665700 63666211 -113307929 - L1PA12 LINE L1 0 6168 5652 3675 208 39 16 chrX 63666211 63666496 -113307644 - L1MB1 LINE L1 -1044 5145 4868 4574 142 23 12 chrX 63666497 63666686 -113307454 - L1PA15 LINE L1 -2 6163 5977 2335 98 0 0 chrX 63666686 63666983 -113307157 - AluY SINE Alu -14 297 1 4574 142 23 12 chrX 63666983 63667480 -113306660 - L1PA15 LINE L1 -188 5977 5487 2031 138 7 0 chrX 63667480 63667770 -113306370 - AluSq SINE Alu -19 294 3 4574 142 23 12 chrX 63667770 63668505 -113305635 - L1PA15 LINE L1 -678 5487 4740 33 0 0 0 chrX 63668511 63668544 -113305596 + AT_rich Low_complexity Low_complexity 1 33 0 683 199 73 37 chrX 63668749 63668940 -113305200 + L1MD2 LINE L1 5727 5924 -318 767 241 154 43 chrX 63668955 63669254 -113304886 + L1MD2 LINE L1 6017 6348 -11 367 213 109 109 chrX 63669312 63669355 -113304785 + L2 LINE L2 3104 3146 -167 957 41 0 0 chrX 63669355 63669477 -113304663 + (TATTG)n Simple_repeat Simple_repeat 3 124 0 367 213 109 109 chrX 63669477 63669635 -113304505 + L2 LINE L2 3145 3305 -8 197 312 26 33 chrX 63669679 63669805 -113304335 - MIR3 SINE MIR -51 157 39 2221 98 0 3 chrX 63670246 63670533 -113303607 + AluSg SINE Alu 1 286 -24 198 0 0 0 chrX 63670538 63670560 -113303580 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 204 414 58 0 chrX 63670739 63670843 -113303297 - L2 LINE L2 -18 3254 3145 1757 109 15 18 chrX 63671023 63671297 -113302843 - L1PA10 LINE L1 -1 6167 5895 19062 39 1 1 chrX 63671318 63674469 -113299671 - L1PA3 LINE L1 0 6155 3041 10238 213 74 17 chrX 63674480 63675127 -113299013 + L1MA5 LINE L1 2007 2616 -3684 12699 148 41 23 chrX 63675127 63676646 -113297494 + L1PA10 LINE L1 3118 4608 -1560 1859 117 8 0 chrX 63676646 63676903 -113297237 + AluSc SINE Alu 50 308 -1 12699 148 41 23 chrX 63676903 63677555 -113296585 + L1PA10 LINE L1 4608 5247 -921 183 42 0 0 chrX 63677555 63677579 -113296561 + (CAA)n Simple_repeat Simple_repeat 3 26 0 12699 148 41 23 chrX 63677579 63678204 -113295936 + L1PA10 LINE L1 5247 5942 -226 2218 96 3 0 chrX 63678204 63678536 -113295604 + AluY SINE Alu 1 333 0 12699 148 41 23 chrX 63678536 63678748 -113295392 + L1PA10 LINE L1 5942 6149 -19 180 0 0 0 chrX 63678748 63678768 -113295372 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 10238 213 74 17 chrX 63678768 63682172 -113291968 + L1MA5 LINE L1 2615 6299 -1 998 239 3 112 chrX 63682187 63682518 -113291622 + MLT1A1 LTR MaLR 71 365 0 1973 251 54 21 chrX 63682545 63683266 -113290874 + L1ME LINE L1 4626 5370 -776 951 243 4 12 chrX 63683410 63683653 -113290487 + L1ME LINE L1 5355 5595 -569 1189 277 142 20 chrX 63683678 63684368 -113289772 + L1MC4a LINE L1 5369 6142 -1666 459 296 118 21 chrX 63685121 63685307 -113288833 - MIR SINE MIR -50 212 9 190 356 0 0 chrX 63685293 63685352 -113288788 + L2 LINE L2 3254 3312 -1 * 7623 25 0 0 chrX 63686264 63687337 -113286803 - L1PA3 LINE L1 0 6155 5082 7403 26 0 5 chrX 63687337 63688217 -113285923 + L1P LINE L1 3715 4590 -1556 1687 175 119 18 chrX 63691079 63691632 -113282508 + L1MD2 LINE L1 5679 6355 -4 905 18 0 0 chrX 63691804 63691917 -113282223 - L1PA4 LINE L1 -771 5375 5263 6619 26 0 1 chrX 63691917 63692692 -113281448 + L1PA4 LINE L1 5381 6154 -1 658 301 31 10 chrX 63692828 63693021 -113281119 - MIR SINE MIR -54 208 12 21 36 0 0 chrX 63693993 63694021 -113280119 + AT_rich Low_complexity Low_complexity 1 28 0 666 153 160 0 chrX 63694297 63694441 -113279699 - L1MD1 LINE L1 -380 5862 5696 5905 171 22 10 chrX 63694588 63696571 -113277569 - L1PA15 LINE L1 -8 6157 4150 854 45 15 22 chrX 63698215 63698349 -113275791 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 180 320 90 10 chrX 63699577 63699677 -113274463 + L3 LINE CR1 1188 1295 -282 255 61 0 0 chrX 63700290 63700323 -113273817 + (TG)n Simple_repeat Simple_repeat 2 34 0 194 105 26 0 chrX 63701749 63701787 -113272353 + (CA)n Simple_repeat Simple_repeat 2 40 0 2398 89 0 16 chrX 63702849 63703163 -113270977 + AluSx SINE Alu 2 310 -2 333 0 0 0 chrX 63703405 63703442 -113270698 + (TG)n Simple_repeat Simple_repeat 2 38 0 753 154 0 0 chrX 63703465 63703575 -113270565 - FLAM_C SINE Alu -20 123 14 22 0 0 0 chrX 63703641 63703663 -113270477 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chrX 63704536 63704580 -113269560 + AT_rich Low_complexity Low_complexity 1 44 0 470 231 67 131 chrX 63704768 63705036 -113269104 - MIR SINE MIR -10 252 2 704 262 72 68 chrX 63705210 63705489 -113268651 - MLT1K LTR MaLR 0 588 309 665 20 49 10 chrX 63706394 63706496 -113267644 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 21 36 0 0 chrX 63708140 63708168 -113265972 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chrX 63708168 63708207 -113265933 + (CA)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chrX 63708267 63708292 -113265848 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2326 107 0 0 chrX 63713514 63713813 -113260327 - AluSg SINE Alu -9 301 3 22 0 0 0 chrX 63714778 63714800 -113259340 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 63714842 63714870 -113259270 + AT_rich Low_complexity Low_complexity 1 28 0 2079 144 0 35 chrX 63716098 63716446 -113257694 - MER1B DNA MER1_type 0 337 2 35 24 0 0 chrX 63720427 63720469 -113253671 + AT_rich Low_complexity Low_complexity 1 42 0 4059 138 17 5 chrX 63722598 63723251 -113250889 - L1PA16 LINE L1 -9 6157 5497 2108 149 64 0 chrX 63723256 63723631 -113250509 - MER57A LTR ERV1 -4 399 1 876 142 150 99 chrX 63723631 63723884 -113250256 - MER57A-int LTR ERV1 0 7537 7272 707 139 25 8 chrX 63723884 63724006 -113250134 - LTR54B LTR ERV1 -371 127 4 21768 122 19 8 chrX 63724007 63727372 -113246768 - MER57A-int LTR ERV1 -391 7146 3743 2471 106 8 3 chrX 63727372 63727728 -113246412 - L1PB1 LINE L1 0 7570 7210 195 42 0 0 chrX 63727728 63727752 -113246388 + (TG)n Simple_repeat Simple_repeat 2 25 0 2471 106 8 3 chrX 63727752 63727763 -113246377 - L1PB1 LINE L1 -360 7210 7201 336 171 0 0 chrX 63727769 63727851 -113246289 + (TA)n Simple_repeat Simple_repeat 1 82 0 3069 161 24 20 chrX 63727851 63728758 -113245382 - L1PB1 LINE L1 -595 6975 6071 2804 135 42 26 chrX 63728759 63729203 -113244937 + MER9 LTR ERVK 1 455 -56 216 0 0 0 chrX 63729203 63729227 -113244913 + (TG)n Simple_repeat Simple_repeat 1 24 0 2804 135 42 26 chrX 63729227 63729285 -113244855 + MER9 LTR ERVK 455 511 0 4526 111 8 18 chrX 63729285 63729954 -113244186 + HERVK9 LTR ERVK 1 662 -5254 7668 85 2 0 chrX 63729954 63730962 -113243178 + HERVK9 LTR ERVK 1625 2634 -3282 19041 94 2 0 chrX 63730991 63733529 -113240611 + HERVK9 LTR ERVK 3092 5634 -282 2258 120 12 10 chrX 63733555 63733908 -113240232 + HERVK9 LTR ERVK 5635 5916 0 3271 112 43 4 chrX 63733908 63734400 -113239740 + MER9 LTR ERVK 1 511 0 4097 219 36 12 chrX 63734400 63735515 -113238625 - L1PB1 LINE L1 -1490 6075 4934 10753 239 60 35 chrX 63735646 63739574 -113234566 - L1PB1 LINE L1 -3831 3734 18 2246 218 20 9 chrX 63739641 63740178 -113233962 - L1MB8 LINE L1 -12 6166 5624 6077 168 40 39 chrX 63740180 63740663 -113233477 + Ricksha_b DNA DNA 8 489 -2365 2089 120 49 25 chrX 63740663 63741029 -113233111 + THE1C LTR MaLR 1 375 0 6077 168 40 39 chrX 63741029 63741787 -113232353 + Ricksha_b DNA DNA 489 1250 -4 1326 224 42 0 chrX 63741787 63742100 -113232040 - L1MB8 LINE L1 -541 5643 5318 5129 199 25 14 chrX 63742116 63744045 -113230095 - L1PA16 LINE L1 -9 6335 4403 3238 236 37 27 chrX 63744145 63745814 -113228326 - L1MC2 LINE L1 -187 6157 4474 29 47 0 0 chrX 63745855 63745898 -113228242 + AT_rich Low_complexity Low_complexity 1 43 0 991 202 45 8 chrX 63745918 63746161 -113227979 - L1MA9 LINE L1 -40 6272 6021 2310 94 0 12 chrX 63746349 63746678 -113227462 - L1PA8 LINE L1 -3 6169 5845 312 273 0 100 chrX 63746678 63746900 -113227240 - L1MC2 LINE L1 -1775 4371 4171 308 247 34 22 chrX 63746930 63747019 -113227121 - L1MC4 LINE L1 -1339 6703 6614 * 309 213 0 50 chrX 63746940 63747020 -113227120 + L1MC4 LINE L1 6615 6690 -1352 755 254 71 14 chrX 63747020 63747386 -113226754 + L1M4 LINE L1 3000 3386 -2760 * 6589 56 2 0 chrX 63747384 63748217 -113225923 - L1PA6 LINE L1 -3 6151 5317 11559 29 16 1 chrX 63748317 63749723 -113224417 - L1PA6 LINE L1 -1337 4809 3383 2482 171 79 52 chrX 63749723 63750475 -113223665 - MER61C-int LTR ERV1 -4353 864 20 2068 182 34 14 chrX 63750501 63750914 -113223226 - MER61C LTR ERV1 0 434 14 278 316 121 82 chrX 63750965 63751221 -113222919 - L1M2 LINE L1 -5788 1061 796 5974 236 57 43 chrX 63751342 63751891 -113222249 - L1 LINE L1 -865 5867 5327 1366 226 3 30 chrX 63751891 63752046 -113222094 - AluJo SINE Alu -24 288 143 2818 3 0 3 chrX 63752046 63752353 -113221787 - AluYa5 SINE Alu -5 306 1 1366 226 3 30 chrX 63752353 63752493 -113221647 - AluJo SINE Alu -169 143 1 5974 236 57 43 chrX 63752493 63753995 -113220145 - L1 LINE L1 -1405 5327 3789 1579 206 53 0 chrX 63754024 63754384 -113219756 - L1MA4 LINE L1 -4 6296 5918 732 231 82 18 chrX 63754396 63754677 -113219463 - L1 LINE L1 -2975 3757 3459 * 1747 231 41 56 chrX 63754672 63755140 -113219000 - L1 LINE L1 -4997 1656 1196 236 325 136 31 chrX 63755246 63755474 -113218666 - L1 LINE L1 -5668 985 734 6375 142 29 3 chrX 63755501 63756767 -113217373 - L1MA1 LINE L1 -1 7720 6421 228 67 0 0 chrX 63756767 63756797 -113217343 + (TA)n Simple_repeat Simple_repeat 1 30 0 37935 77 17 11 chrX 63756797 63758084 -113216056 - L1PA4 LINE L1 -19 6136 4859 2299 83 0 35 chrX 63758084 63758397 -113215743 + AluY SINE Alu 1 302 -9 37935 77 17 11 chrX 63758397 63758662 -113215478 - L1PA4 LINE L1 -1296 4859 4597 180 0 0 0 chrX 63758662 63758682 -113215458 + (AATTG)n Simple_repeat Simple_repeat 3 22 0 37935 77 17 11 chrX 63758682 63763214 -113210926 - L1PA4 LINE L1 -1558 4597 11 10643 184 23 41 chrX 63763227 63767685 -113206455 - L1MA1 LINE L1 -1133 6432 2057 2939 150 30 33 chrX 63767685 63767818 -113206322 + L1PA13 LINE L1 5586 5718 -445 1951 146 5 91 chrX 63767818 63768216 -113205924 + THE1B LTR MaLR 1 364 0 2939 150 30 33 chrX 63768216 63768655 -113205485 + L1PA13 LINE L1 5718 6156 -7 1760 179 3 3 chrX 63768666 63769023 -113205117 + L1PA16 LINE L1 2547 2903 -3946 25 31 0 0 chrX 63769053 63769085 -113205055 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chrX 63769106 63769164 -113204976 + AT_rich Low_complexity Low_complexity 1 58 0 1143 117 62 0 chrX 63769438 63769600 -113204540 - AluSg/x SINE Alu -12 300 129 393 82 0 0 chrX 63769613 63769674 -113204466 - L1PA3 LINE L1 0 6155 6095 28663 127 12 84 chrX 63769674 63775352 -113198788 - L1P LINE L1 -865 5281 12 8364 232 60 10 chrX 63775374 63779011 -113195129 + L1PA16 LINE L1 3062 6860 -9 23 33 0 0 chrX 63779011 63779041 -113195099 + AT_rich Low_complexity Low_complexity 1 30 0 4955 261 26 16 chrX 63779060 63779637 -113194503 + L1 LINE L1 2560 3130 -3016 4727 93 8 2 chrX 63779637 63780280 -113193860 + L1PA10 LINE L1 5509 6155 -13 4955 261 26 16 chrX 63780280 63781453 -113192687 + L1 LINE L1 3130 4328 -1818 216 0 0 0 chrX 63781464 63781488 -113192652 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1152 225 52 16 chrX 63781490 63781876 -113192264 + L1 LINE L1 3100 3499 -2647 3034 278 100 13 chrX 63781886 63784273 -113189867 - L1 LINE L1 -3129 4436 1897 724 295 71 21 chrX 63784372 63784780 -113189360 - L1 LINE L1 -6589 976 539 1943 151 3 6 chrX 63784783 63785094 -113189046 - MER4A LTR ERV1 0 664 355 2172 108 13 54 chrX 63785135 63785507 -113188633 - MER4A LTR ERV1 -307 357 1 3006 170 26 52 chrX 63785512 63786255 -113187885 - MER4A-int LTR ERV1 -1 6597 5875 12919 231 30 25 chrX 63786284 63789016 -113185124 - L1PB3 LINE L1 -2 6855 4138 2850 88 3 0 chrX 63789016 63789404 -113184736 - L1PA8 LINE L1 -13 6159 5771 12919 231 30 25 chrX 63789404 63794389 -113179751 - L1PB3 LINE L1 -2719 4138 11 396 0 0 0 chrX 63794391 63794435 -113179705 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 354 333 0 0 chrX 63794492 63794615 -113179525 + L1PBa LINE L1 294 416 -6447 12710 164 69 32 chrX 63794627 63797622 -113176518 - MER4A-int LTR ERV1 -756 5842 2736 1674 226 68 36 chrX 63797445 63798006 -113176134 - LTR57-int LTR ERVL -3773 1570 992 * 9059 158 115 58 chrX 63797717 63799087 -113175053 - MER4A-int LTR ERV1 -4113 2485 1194 2010 161 0 0 chrX 63799087 63799385 -113174755 + AluSx SINE Alu 1 298 -14 9059 158 115 58 chrX 63799385 63799980 -113174160 - MER4A-int LTR ERV1 -5404 1194 634 5242 60 64 119 chrX 63799980 63800853 -113173287 - LTR12 LTR ERV1 0 826 2 9059 158 115 58 chrX 63800853 63801233 -113172907 - MER4A-int LTR ERV1 -5964 634 6 1720 149 44 20 chrX 63801241 63801483 -113172657 - MER4A LTR ERV1 0 664 412 2294 27 0 0 chrX 63801483 63801741 -113172399 + AluY SINE Alu 39 296 -15 1720 149 44 20 chrX 63801741 63801793 -113172347 - MER4A LTR ERV1 -252 412 363 6837 63 15 0 chrX 63801896 63802897 -113171243 - L1PA7 LINE L1 -5 6149 5141 1862 61 0 0 chrX 63802900 63803145 -113170995 + L1PA7 LINE L1 4893 5137 -1009 2039 128 0 60 chrX 63803145 63803512 -113170628 - MER4A LTR ERV1 -319 345 1 274 344 25 12 chrX 63803521 63803684 -113170456 - L1M1 LINE L1 -6594 512 348 1555 214 59 69 chrX 63803790 63803988 -113170152 - L1M1 LINE L1 -6526 504 306 4298 84 62 14 chrX 63803988 63804618 -113169522 + PABL_A LTR ERV1 1 660 0 1555 214 59 69 chrX 63804618 63804956 -113169184 - L1M1 LINE L1 -6724 306 10 474 313 30 12 chrX 63805027 63805193 -113168947 + MIR SINE MIR 94 262 0 269 261 23 0 chrX 63805208 63805296 -113168844 + (TAG)n Simple_repeat Simple_repeat 1 90 0 22 35 0 0 chrX 63805472 63805501 -113168639 + AT_rich Low_complexity Low_complexity 1 29 0 287 148 25 25 chrX 63805823 63805904 -113168236 + (TA)n Simple_repeat Simple_repeat 2 82 0 578 152 0 10 chrX 63805915 63806014 -113168126 + MER4A LTR ERV1 1 98 -566 1782 106 160 85 chrX 63806014 63806390 -113167750 + MER4A LTR ERV1 261 664 0 309 169 0 48 chrX 63806390 63806514 -113167626 + (TA)n Simple_repeat Simple_repeat 2 119 0 477 0 0 0 chrX 63806566 63806619 -113167521 + (CA)n Simple_repeat Simple_repeat 2 54 0 349 292 33 0 chrX 63807902 63808022 -113166118 + LTR67 LTR ERVL 434 557 0 559 341 22 13 chrX 63809024 63809253 -113164887 + MIR SINE MIR 23 253 -9 336 230 260 0 chrX 63809278 63809378 -113164762 - L2 LINE L2 -4 3309 3184 3091 152 2 11 chrX 63809530 63810050 -113164090 + L1PA15 LINE L1 5651 6165 0 901 329 178 9 chrX 63810136 63810896 -113163244 - L2 LINE L2 -776 2538 1651 4991 131 41 5 chrX 63811121 63811924 -113162216 - L1PA14 LINE L1 -2 6159 5328 8959 166 23 5 chrX 63812281 63814911 -113159229 + L1MA3 LINE L1 3523 6204 -101 321 296 0 0 chrX 63815244 63815315 -113158825 + L2 LINE L2 3198 3268 -4 204 40 0 0 chrX 63816185 63816210 -113157930 + (CCA)n Simple_repeat Simple_repeat 1 25 0 662 304 26 18 chrX 63816879 63817106 -113157034 + MIR SINE MIR 1 229 -33 272 286 209 0 chrX 63817513 63817604 -113156536 + L2 LINE L2 3150 3259 -13 322 269 37 67 chrX 63818089 63818223 -113155917 + MIR SINE MIR 70 199 -63 411 221 3 0 chrX 63818534 63818617 -113155523 - MLT1E1 LTR MaLR -458 84 1 381 243 177 30 chrX 63818617 63818917 -113155223 + L1ME2 LINE L1 2381 2724 -3422 9352 195 28 17 chrX 63818919 63819598 -113154542 - L1PA16 LINE L1 0 6166 5496 2268 76 0 3 chrX 63819598 63819888 -113154252 - AluY SINE Alu -12 299 11 9352 195 28 17 chrX 63819888 63821661 -113152479 - L1PA16 LINE L1 -670 5496 3676 207 0 0 0 chrX 63821661 63821684 -113152456 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 9352 195 28 17 chrX 63821684 63822417 -113151723 - L1PA16 LINE L1 -2490 3676 2953 2438 272 69 44 chrX 63822419 63823631 -113150509 + L1ME2 LINE L1 2716 3897 -2249 2501 57 0 3 chrX 63823631 63823931 -113150209 + AluY SINE Alu 1 299 -12 2438 272 69 44 chrX 63823931 63824224 -113149916 + L1ME2 LINE L1 3897 4270 -1876 2033 134 0 13 chrX 63824224 63824530 -113149610 + AluSx SINE Alu 1 302 -10 2438 272 69 44 chrX 63824530 63824723 -113149417 + L1ME2 LINE L1 4270 4457 -1689 995 185 28 5 chrX 63824726 63824937 -113149203 + L1MA10 LINE L1 5743 5958 -210 1292 195 30 17 chrX 63824939 63825050 -113149090 + L1MA10 LINE L1 6032 6140 -194 2127 131 0 3 chrX 63825050 63825363 -113148777 - AluSx SINE Alu 0 312 1 1292 195 30 17 chrX 63825363 63825381 -113148759 + L1MA10 LINE L1 6140 6156 -178 207 0 0 0 chrX 63825381 63825404 -113148736 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1292 195 30 17 chrX 63825404 63825571 -113148569 + L1MA10 LINE L1 6156 6333 -1 1115 283 101 44 chrX 63825596 63826369 -113147771 + L1ME2 LINE L1 4489 5305 -841 * 2299 235 89 2 chrX 63826366 63826975 -113147165 - L1MA10 LINE L1 -2033 4113 3452 * 4414 209 74 17 chrX 63826974 63828485 -113145655 + L1MA10 LINE L1 4125 5549 -785 2158 112 0 3 chrX 63828485 63828779 -113145361 - AluSg SINE Alu -17 293 1 4414 209 74 17 chrX 63828779 63828792 -113145348 + L1MA10 LINE L1 5549 5560 -774 186 43 0 0 chrX 63828792 63828815 -113145325 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 4414 209 74 17 chrX 63828815 63829017 -113145123 + L1MA10 LINE L1 5560 5749 -585 1852 188 70 34 chrX 63829017 63829254 -113144886 - MSTB1 LTR MaLR 0 432 172 1912 135 3 10 chrX 63829254 63829607 -113144533 + AluSg SINE Alu 1 310 0 1852 188 70 34 chrX 63829607 63829785 -113144355 - MSTB1 LTR MaLR -260 172 2 4414 209 74 17 chrX 63829785 63830147 -113143993 + L1MA10 LINE L1 5749 6334 0 966 285 33 5 chrX 63830213 63830581 -113143559 + L1ME2 LINE L1 5548 5925 -245 278 255 134 34 chrX 63830592 63830741 -113143399 + L1ME2 LINE L1 5976 6139 -25 25 31 0 0 chrX 63830742 63830774 -113143366 + AT_rich Low_complexity Low_complexity 1 32 0 2720 97 12 61 chrX 63831590 63832014 -113142126 + MLT2A2 LTR ERVL 1 403 -50 542 41 14 0 chrX 63832015 63832088 -113142052 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 4369 167 23 31 chrX 63832091 63833076 -113141064 - MER11C LTR ERVK -4 1067 2 426 20 0 0 chrX 63833076 63833127 -113141013 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 271 139 0 0 chrX 63833135 63833178 -113140962 + MLT2A2 LTR ERVL 411 453 0 3669 252 42 55 chrX 63833463 63834214 -113139926 + L1MB5 LINE L1 2180 2939 -3207 321 26 0 0 chrX 63834214 63834253 -113139887 + MLT2A2 LTR ERVL 37 75 -378 3669 252 42 55 chrX 63834253 63835068 -113139072 + L1MB5 LINE L1 2939 3763 -2383 1799 153 0 14 chrX 63835068 63835349 -113138791 + AluJo SINE Alu 11 287 -25 3669 252 42 55 chrX 63835349 63835436 -113138704 + L1MB5 LINE L1 3763 3850 -2296 3593 194 23 63 chrX 63835549 63836456 -113137684 + L1MB5 LINE L1 5291 6161 -13 481 284 47 0 chrX 63837960 63838108 -113136032 - MER63A DNA MER1_type 0 210 56 1937 174 88 8 chrX 63838355 63838637 -113135503 - MSTC LTR MaLR -4 424 101 183 114 0 0 chrX 63838637 63838672 -113135468 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 1937 174 88 8 chrX 63838672 63838775 -113135365 - MSTC LTR MaLR -327 101 8 751 37 2 0 chrX 63839017 63839114 -113135026 - L1PA5 LINE L1 -489 5677 5579 4088 39 0 0 chrX 63839115 63839603 -113134537 + L1PA5 LINE L1 5660 6147 -7 242 202 10 144 chrX 63840837 63840941 -113133199 - L2 LINE L2 0 3272 3183 609 304 76 7 chrX 63841968 63842296 -113131844 + L1ME LINE L1 5474 5822 -340 277 204 41 27 chrX 63842297 63842444 -113131696 + (TA)n Simple_repeat Simple_repeat 2 150 0 373 220 44 0 chrX 63842598 63842689 -113131451 - MER53 DNA DNA -94 95 1 22 35 0 0 chrX 63842807 63842836 -113131304 + AT_rich Low_complexity Low_complexity 1 29 0 2020 169 3 21 chrX 63843420 63843792 -113130348 + MER47A DNA MER2_type 2 366 0 2456 47 0 25 chrX 63845144 63845461 -113128679 + AluY SINE Alu 1 309 -2 292 175 0 18 chrX 63845485 63845542 -113128598 - L2 LINE L2 0 3313 3258 346 207 49 12 chrX 63847358 63847440 -113126700 - L1PA16 LINE L1 -3 6163 6079 2239 121 51 0 chrX 63847721 63848094 -113126046 - L1PA11 LINE L1 -1 6173 5782 1787 99 75 3 chrX 63848096 63848596 -113125544 - L1PA11 LINE L1 -619 5555 5031 * 8346 142 4 10 chrX 63848595 63849971 -113124169 - L1PA11 LINE L1 -1495 4651 3284 783 175 0 24 chrX 63849970 63850136 -113124004 - L1PA16 LINE L1 -81 6085 5924 * 1072 167 91 0 chrX 63850716 63850914 -113123226 - MER20 DNA MER1_type -3 216 1 11777 171 19 12 chrX 63850928 63853904 -113120236 - L1M1 LINE L1 -4457 3108 115 2089 120 6 22 chrX 63853904 63854220 -113119920 - AluSx SINE Alu -1 311 1 11777 171 19 12 chrX 63854220 63854324 -113119816 - L1M1 LINE L1 -7450 115 13 25 31 0 0 chrX 63855627 63855659 -113118481 + AT_rich Low_complexity Low_complexity 1 32 0 1687 176 3 44 chrX 63856595 63856914 -113117226 - AluJo SINE Alu -6 306 1 195 42 0 0 chrX 63857729 63857753 -113116387 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 256 326 138 29 chrX 63857760 63857898 -113116242 - L2 LINE L2 -4 3268 3116 222 338 0 52 chrX 63857937 63858014 -113116126 + L3b LINE CR1 1511 1583 0 3919 145 29 11 chrX 63858264 63858928 -113115212 - L1PA16 LINE L1 0 6166 5491 1233 221 20 37 chrX 63858931 63859229 -113114911 - AluJo SINE Alu -19 293 1 181 157 0 39 chrX 63859987 63860038 -113114102 + T-rich Low_complexity Low_complexity 2 50 0 2359 90 3 3 chrX 63860766 63861076 -113113064 - AluSg SINE Alu 0 310 1 257 51 26 0 chrX 63861342 63861381 -113112759 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 234 150 17 83 chrX 63861633 63861693 -113112447 - L2 LINE L2 -8 3264 3209 182 340 90 10 chrX 63861825 63861925 -113112215 - MIR3 SINE MIR -86 122 15 1975 108 0 0 chrX 63862024 63862304 -113111836 + AluSc SINE Alu 22 301 0 266 285 57 16 chrX 63862529 63862652 -113111488 + L1ME LINE L1 5275 5402 -2406 322 365 8 12 chrX 63862788 63863032 -113111108 + L1ME LINE L1 5592 5834 -287 351 355 20 7 chrX 63863177 63863329 -113110811 - MIR SINE MIR -59 203 50 42 0 0 0 chrX 63863821 63863863 -113110277 + AT_rich Low_complexity Low_complexity 1 42 0 3120 49 0 0 chrX 63863973 63864358 -113109782 - L1PA5 LINE L1 0 6154 5770 19314 36 2 0 chrX 63864376 63867521 -113106619 - L1PA4 LINE L1 -2 6153 3010 1405 39 6 0 chrX 63867521 63867700 -113106440 - L1PA5 LINE L1 -374 5780 5601 187 310 17 0 chrX 63868238 63868296 -113105844 - MIR3 SINE MIR -41 167 109 213 0 81 0 chrX 63869329 63869366 -113104774 + A-rich Low_complexity Low_complexity 4 43 0 366 277 164 23 chrX 63869541 63869718 -113104422 + MIR3 SINE MIR 4 205 -3 22 35 0 0 chrX 63869967 63869996 -113104144 + AT_rich Low_complexity Low_complexity 1 29 0 19749 198 25 26 chrX 63870820 63877360 -113096780 - L1PA11 LINE L1 -3 7609 1 2197 115 3 6 chrX 63878539 63878853 -113095287 + AluSp SINE Alu 1 313 0 823 222 25 12 chrX 63879034 63879276 -113094864 + L1MA5 LINE L1 6003 6251 -54 2142 94 28 0 chrX 63879395 63879683 -113094457 + AluSg SINE Alu 1 296 -14 2054 149 3 0 chrX 63879751 63880078 -113094062 - AluSq SINE Alu 0 328 1 642 251 150 13 chrX 63880149 63880376 -113093764 + MLT1L LTR MaLR 11 268 -347 397 323 29 29 chrX 63880792 63881001 -113093139 + MIR3 SINE MIR 2 208 -54 208 360 81 0 chrX 63881045 63881156 -113092984 + L2 LINE L2 3153 3272 0 230 231 0 121 chrX 63881263 63881354 -113092786 - L2 LINE L2 -8 3264 3185 484 323 49 9 chrX 63881392 63881618 -113092522 - L1M4 LINE L1 -2250 3896 3662 6221 92 15 7 chrX 63881830 63883199 -113090941 + L1PA11 LINE L1 4788 6169 -5 294 132 0 0 chrX 63883518 63883571 -113090569 + (GA)n Simple_repeat Simple_repeat 2 54 0 25 0 0 0 chrX 63884922 63884947 -113089193 + AT_rich Low_complexity Low_complexity 1 25 0 588 271 179 9 chrX 63886055 63886273 -113087867 + MIR SINE MIR 6 260 -2 514 257 18 0 chrX 63886722 63886835 -113087305 + L2 LINE L2 3158 3272 0 236 350 0 0 chrX 63887794 63887854 -113086286 - MIR SINE MIR -71 137 78 306 0 0 0 chrX 63888888 63888922 -113085218 + (CA)n Simple_repeat Simple_repeat 2 35 0 1136 207 11 14 chrX 63890965 63891322 -113082818 + L1 LINE L1 3844 4292 -1854 3857 136 1 23 chrX 63891325 63891675 -113082465 + L1PB2 LINE L1 5518 5850 -301 2296 78 0 3 chrX 63891675 63891992 -113082148 - AluSp SINE Alu 0 316 1 3857 136 1 23 chrX 63891992 63892288 -113081852 + L1PB2 LINE L1 5850 6151 0 2999 236 18 6 chrX 63892294 63893092 -113081048 + L1P LINE L1 1419 2225 -3921 1555 194 12 21 chrX 63893093 63893418 -113080722 - THE1C LTR MaLR 0 375 54 825 269 51 9 chrX 63893419 63893847 -113080293 + L1MB4 LINE L1 2711 3156 -2990 733 341 62 40 chrX 63893875 63894471 -113079669 + L1PA15 LINE L1 789 1397 -6177 307 292 0 10 chrX 63894594 63894690 -113079450 + L1PA15 LINE L1 2086 2180 -5401 3205 278 34 23 chrX 63894937 63896779 -113077361 + L1PA15 LINE L1 2182 4055 -3529 1945 187 181 55 chrX 63896799 63897436 -113076704 - MER50 LTR ERV1 0 734 18 7531 230 34 17 chrX 63897437 63898063 -113076077 + L1PA15 LINE L1 4077 4691 -2912 819 68 0 0 chrX 63898063 63898166 -113075974 + L1PA5 LINE L1 6044 6146 -8 7531 230 34 17 chrX 63898166 63898463 -113075677 + L1PA15 LINE L1 4691 4981 -2622 2169 135 0 3 chrX 63898463 63898774 -113075366 + AluSx SINE Alu 1 310 -2 7531 230 34 17 chrX 63898774 63901318 -113072822 + L1PA15 LINE L1 4981 7602 -1 680 178 44 7 chrX 63901340 63901475 -113072665 + THE1C LTR MaLR 1 140 -235 623 222 103 35 chrX 63901519 63901925 -113072215 + L1MB4 LINE L1 3324 3757 -2389 2728 225 43 42 chrX 63901933 63903067 -113071073 + L1MB4 LINE L1 5035 6175 -5 14439 201 22 8 chrX 63903133 63903159 -113070981 + L1MA3 LINE L1 10 34 -7531 2131 159 5 22 chrX 63903159 63903529 -113070611 + THE1B LTR MaLR 1 364 0 14439 201 22 8 chrX 63903529 63903599 -113070541 + L1MA3 LINE L1 34 102 -7463 210 37 0 0 chrX 63903599 63903626 -113070514 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14439 201 22 8 chrX 63903626 63905524 -113068616 + L1MA3 LINE L1 102 2056 -5509 306 0 0 0 chrX 63905524 63905558 -113068582 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 14439 201 22 8 chrX 63905558 63906362 -113067778 + L1MA3 LINE L1 2056 2848 -4717 2008 56 33 0 chrX 63906366 63906636 -113067504 - L1PA3 LINE L1 -99 6056 5778 705 0 0 33 chrX 63906606 63906696 -113067444 + L1PA3 LINE L1 6068 6154 -1 * 11112 197 73 8 chrX 63906679 63910907 -113063233 + L1MA3 LINE L1 2830 7345 -379 4119 113 8 3 chrX 63910921 63911547 -113062593 - L1PB1 LINE L1 0 6151 5523 8888 190 52 9 chrX 63911547 63912695 -113061445 - L1PBa LINE L1 -2350 4512 3414 186 43 0 0 chrX 63912695 63912718 -113061422 + (TA)n Simple_repeat Simple_repeat 1 23 0 8888 190 52 9 chrX 63912718 63915753 -113058387 - L1PBa LINE L1 -3448 3414 7 2058 113 37 13 chrX 63915771 63916150 -113057990 + L1MA3 LINE L1 7335 7722 -2 22 0 0 0 chrX 63916151 63916173 -113057967 + AT_rich Low_complexity Low_complexity 1 22 0 289 204 124 53 chrX 63916257 63916370 -113057770 + L1MC5 LINE L1 7791 7911 -50 316 301 212 0 chrX 63916856 63916969 -113057171 + MIR SINE MIR 36 172 -90 198 219 188 0 chrX 63917018 63917082 -113057058 + MIR SINE MIR 187 262 0 221 39 58 39 chrX 63917304 63917356 -113056784 + T-rich Low_complexity Low_complexity 2 54 0 1279 159 8 4 chrX 63917522 63917761 -113056379 + L1M4 LINE L1 5556 5795 -389 323 305 0 0 chrX 63917766 63917861 -113056279 + LTR33 LTR ERVL 422 516 -5 21 36 0 0 chrX 63917893 63917921 -113056219 + AT_rich Low_complexity Low_complexity 1 28 0 390 303 0 0 chrX 63918002 63918144 -113055996 - L1M4 LINE L1 -2663 3483 3342 1123 39 13 13 chrX 63918154 63918307 -113055833 + (TTTC)n Simple_repeat Simple_repeat 3 155 0 1611 189 4 11 chrX 63918308 63918588 -113055552 - AluSx SINE Alu -32 280 3 781 130 8 0 chrX 63918601 63918724 -113055416 + L1P4 LINE L1 5660 5783 -383 592 239 0 0 chrX 63919295 63919450 -113054690 - L1M4 LINE L1 -3320 2826 2672 2539 45 3 10 chrX 63920214 63920523 -113053617 + AluY SINE Alu 2 308 -3 6637 108 9 1 chrX 63920624 63921139 -113053001 - L1P3 LINE L1 -5528 933 406 216 0 0 0 chrX 63921139 63921163 -113052977 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6637 108 9 1 chrX 63921163 63921573 -113052567 - L1P3 LINE L1 -6055 406 1 2246 153 5 15 chrX 63921643 63922041 -113052099 + L1PA16 LINE L1 5769 6162 -4 308 215 32 0 chrX 63922044 63922137 -113052003 - L1M4 LINE L1 -2802 3344 3249 534 219 11 5 chrX 63922691 63922870 -113051270 - L1M4 LINE L1 -2878 3268 3089 10250 223 37 39 chrX 63922914 63925445 -113048695 - L1MA10 LINE L1 0 7753 5218 1923 175 18 3 chrX 63925445 63925783 -113048357 - MER61A LTR ERV1 0 343 1 10250 223 37 39 chrX 63925783 63926664 -113047476 - L1MA10 LINE L1 -2535 5218 4337 3512 127 67 14 chrX 63926664 63927288 -113046852 - MER51D LTR ERV1 0 657 1 10250 223 37 39 chrX 63927288 63928236 -113045904 - L1MA10 LINE L1 -3416 4337 3386 2413 72 3 3 chrX 63928236 63928542 -113045598 - AluY SINE Alu -5 306 1 10250 223 37 39 chrX 63928542 63928924 -113045216 - L1MA10 LINE L1 -4367 3386 3005 28 0 0 0 chrX 63928924 63928952 -113045188 + AT_rich Low_complexity Low_complexity 1 28 0 1542 158 51 22 chrX 63928956 63928985 -113045155 - L1MA3 LINE L1 -1 6304 6277 252 86 0 0 chrX 63928985 63929020 -113045120 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1542 158 51 22 chrX 63929020 63929306 -113044834 - L1MA3 LINE L1 -28 6277 5980 1910 133 10 7 chrX 63929306 63929608 -113044532 + L1MA2 LINE L1 5506 5808 -496 1773 112 4 4 chrX 63929611 63929888 -113044252 + L1MA2 LINE L1 6027 6303 -1 2368 103 14 24 chrX 63929915 63930285 -113043855 + L1MA3 LINE L1 5594 5959 -346 * 4641 189 27 9 chrX 63930280 63931480 -113042660 - L1PA16 LINE L1 -11 6155 4936 1080 284 70 14 chrX 63931479 63931979 -113042161 - L1M4c LINE L1 -4589 1623 1096 * 333 0 0 0 chrX 63931979 63932016 -113042124 + (TG)n Simple_repeat Simple_repeat 1 37 0 1968 287 51 27 chrX 63932095 63933094 -113041046 - L1M4c LINE L1 -5068 1073 1 9205 180 94 40 chrX 63933100 63934736 -113039404 - L1MCa LINE L1 -3863 2563 754 3155 71 2 11 chrX 63934736 63935173 -113038967 - L1PA7 LINE L1 -1 6153 5721 9205 180 94 40 chrX 63935173 63935955 -113038185 - L1MCa LINE L1 -5672 754 16 21 36 0 0 chrX 63935962 63935990 -113038150 + AT_rich Low_complexity Low_complexity 1 28 0 591 309 135 4 chrX 63936334 63936564 -113037576 + MIR SINE MIR 1 260 -2 255 270 22 0 chrX 63936714 63936803 -113037337 - L1ME LINE L1 -726 5444 5354 849 191 12 12 chrX 63937082 63937244 -113036896 - AluJb SINE Alu -16 296 135 291 247 68 0 chrX 63937337 63937410 -113036730 + L1MEc LINE L1 582 659 -5737 1296 129 0 0 chrX 63937450 63937644 -113036496 + L1PB2 LINE L1 1 194 -6669 13024 173 46 10 chrX 63937644 63940686 -113033454 + L1PB2 LINE L1 541 3472 -3395 2180 102 7 7 chrX 63940686 63940981 -113033159 + AluY SINE Alu 1 295 -16 13024 173 46 10 chrX 63940981 63944039 -113030101 + L1PB2 LINE L1 3472 6864 -3 22 0 0 0 chrX 63944042 63944064 -113030076 + AT_rich Low_complexity Low_complexity 1 22 0 305 283 0 40 chrX 63944221 63944320 -113029820 + L1MC4 LINE L1 6609 6703 -1339 437 352 51 27 chrX 63944661 63944996 -113029144 + L2 LINE L2 475 817 -2497 2237 77 7 35 chrX 63945126 63945436 -113028704 - AluY SINE Alu -8 303 3 1882 114 57 0 chrX 63945438 63945719 -113028421 - AluSx SINE Alu -15 297 1 1037 206 50 103 chrX 63945894 63946272 -113027868 + MLT1A1 LTR MaLR 1 358 -7 1783 136 47 73 chrX 63946312 63946695 -113027445 - THE1C LTR MaLR -2 373 1 256 396 39 3 chrX 63946787 63947072 -113027068 + ERVL LTR ERVL 898 1192 -3804 2470 360 86 16 chrX 63947141 63948901 -113025239 + ERVL LTR ERVL 1554 3437 -2327 218 54 0 27 chrX 63949082 63949119 -113025021 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1448 168 224 14 chrX 63949185 63949537 -113024603 + MSTA LTR MaLR 3 428 0 9734 135 7 35 chrX 63949539 63951162 -113022978 + MSTA-int LTR MaLR 3 1580 0 1747 135 159 44 chrX 63951162 63951546 -113022594 + MSTA LTR MaLR 1 428 0 963 326 48 17 chrX 63951556 63952037 -113022103 + ERVL LTR ERVL 4894 5389 -375 643 304 27 4 chrX 63952257 63952675 -113021465 + LTR33 LTR ERVL 1 521 0 856 325 69 60 chrX 63952759 63953524 -113020616 + L2 LINE L2 2440 3207 -65 2168 34 0 4 chrX 63953688 63953952 -113020188 - L1PA3 LINE L1 0 6155 5893 674 301 149 35 chrX 63954389 63954934 -113019206 - L1M4 LINE L1 -1432 4714 4108 21 36 0 0 chrX 63956113 63956141 -113017999 + AT_rich Low_complexity Low_complexity 1 28 0 5346 109 18 21 chrX 63956944 63957788 -113016352 - L1PA13 LINE L1 0 6163 5323 277 100 0 0 chrX 63957841 63957881 -113016259 - L1MC1 LINE L1 -5 6328 6289 21 57 0 0 chrX 63957882 63957917 -113016223 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chrX 63958823 63958849 -113015291 + AT_rich Low_complexity Low_complexity 1 26 0 579 142 44 0 chrX 63959286 63959399 -113014741 - L1MB1 LINE L1 0 6168 6051 28 0 0 0 chrX 63960370 63960398 -113013742 + AT_rich Low_complexity Low_complexity 1 28 0 225 237 34 17 chrX 63960489 63960548 -113013592 - MIR SINE MIR -66 142 83 324 0 0 0 chrX 63963571 63963607 -113010533 + (TG)n Simple_repeat Simple_repeat 2 37 0 235 350 0 0 chrX 63964641 63964701 -113009439 + MIR SINE MIR 78 137 -71 514 257 18 0 chrX 63965660 63965773 -113008367 - L2 LINE L2 0 3272 3158 1100 183 22 26 chrX 63966306 63966536 -113007604 + THE1C LTR MaLR 147 375 0 3248 234 18 6 chrX 63966537 63967335 -113006805 - L1PBa LINE L1 -3921 2941 2135 3869 137 1 23 chrX 63967341 63967637 -113006503 - L1PB2 LINE L1 0 6151 5850 2265 81 0 3 chrX 63967637 63967954 -113006186 + AluSp SINE Alu 1 316 0 3869 137 1 23 chrX 63967954 63968304 -113005836 - L1PB2 LINE L1 -301 5850 5518 291 234 13 0 chrX 63968307 63968384 -113005756 - L1 LINE L1 -1854 4292 4215 7182 212 43 28 chrX 63968393 63970971 -113003169 - L1PBb LINE L1 -2034 4169 1533 2375 189 22 17 chrX 63971071 63971102 -113003038 - L1PBb LINE L1 -4907 1297 1268 1123 115 0 0 chrX 63971102 63971267 -113002873 - L1PA11 LINE L1 0 6174 6010 2375 189 22 17 chrX 63971267 63972481 -113001659 - L1PBb LINE L1 -4936 1268 7 1356 243 53 15 chrX 63972452 63972790 -113001350 - L1PBa LINE L1 -5224 980 630 * 3043 298 36 22 chrX 63972799 63973886 -113000254 - L1PBa LINE L1 -5642 1221 120 2273 83 0 0 chrX 64023887 64024187 -112949953 + L1PA8 LINE L1 5872 6171 -1 4638 217 55 27 chrX 64024187 64025839 -112948301 + MER109 Unknown Unknown 4 1392 -1040 1324 146 9 0 chrX 64025839 64026052 -112948088 - AluSg/x SINE Alu -2 310 96 10309 41 9 0 chrX 64027250 64029303 -112944837 + L1PA3 LINE L1 4112 6172 0 1041 125 18 0 chrX 64030226 64030394 -112943746 - L1MA2 LINE L1 0 6304 6134 10318 185 49 4 chrX 64030421 64033556 -112940584 - L1MA2 LINE L1 0 6304 2930 6107 72 39 0 chrX 64033560 64034517 -112939623 - L1PA7 LINE L1 -6 6148 5189 21 0 0 0 chrX 64035224 64035245 -112938895 + AT_rich Low_complexity Low_complexity 1 21 0 279 54 0 0 chrX 64035264 64035301 -112938839 + (TG)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chrX 64035988 64036014 -112938126 + AT_rich Low_complexity Low_complexity 1 26 0 266 311 134 17 chrX 64036958 64037077 -112937063 + L2 LINE L2 3139 3271 -1 573 288 70 67 chrX 64037179 64037582 -112936558 + L2 LINE L2 2910 3313 0 353 313 153 12 chrX 64040517 64040680 -112933460 - MIR3 SINE MIR -15 193 8 1538 183 12 50 chrX 64040940 64041263 -112932877 - AluJb SINE Alu 0 312 2 26 0 0 0 chrX 64041381 64041407 -112932733 + AT_rich Low_complexity Low_complexity 1 26 0 320 365 39 6 chrX 64042969 64043125 -112931015 + MIR3 SINE MIR 32 192 -16 555 93 0 0 chrX 64043864 64043939 -112930201 - MADE1 DNA Mariner -2 78 4 5253 39 0 0 chrX 64044300 64044935 -112929205 + L1PA4 LINE L1 5515 6149 -6 254 234 16 0 chrX 64045027 64045091 -112929049 - MER113 DNA MER1_type? -454 67 3 213 269 19 0 chrX 64045092 64045144 -112928996 + L3 LINE CR1 1525 1577 0 2070 137 3 10 chrX 64045713 64046026 -112928114 + AluSx SINE Alu 1 311 -1 1842 147 0 10 chrX 64046245 64046545 -112927595 - AluSx SINE Alu -15 297 1 208 230 30 110 chrX 64046561 64046661 -112927479 - MIR SINE MIR -64 198 107 331 334 93 47 chrX 64047209 64047661 -112926479 - L2 LINE L2 -1049 2265 1793 809 185 53 32 chrX 64050417 64050606 -112923534 + MIR SINE MIR 11 203 -59 282 73 0 0 chrX 64050819 64050860 -112923280 + (TG)n Simple_repeat Simple_repeat 2 42 0 689 223 14 76 chrX 64051984 64052195 -112921945 + MIR SINE MIR 7 204 -58 207 100 0 0 chrX 64052249 64052279 -112921861 + (CACCAT)n Simple_repeat Simple_repeat 3 32 0 28 29 0 0 chrX 64053258 64053293 -112920847 + AT_rich Low_complexity Low_complexity 1 35 0 4274 131 20 6 chrX 64053293 64053995 -112920145 - L1MA3 LINE L1 -1 6304 5593 281 104 42 0 chrX 64053999 64054047 -112920093 - L1MA3 LINE L1 0 7724 7675 224 254 18 0 chrX 64054047 64054102 -112920038 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 4926 157 58 28 chrX 64054104 64055764 -112918376 - L1MA3 LINE L1 -57 7667 5952 2051 137 0 17 chrX 64056005 64056304 -112917836 + AluSx SINE Alu 3 296 -16 5060 251 91 66 chrX 64056644 64059542 -112914598 + MER109 Unknown Unknown 1 2102 -330 11785 195 23 19 chrX 64059554 64062714 -112911426 - L1MA3 LINE L1 -2055 5510 1652 2584 51 0 0 chrX 64062714 64063025 -112911115 - AluY SINE Alu 0 311 1 11785 195 23 19 chrX 64063025 64064666 -112909474 - L1MA3 LINE L1 -5913 1652 18 1880 127 50 11 chrX 64064777 64065060 -112909080 + AluSx SINE Alu 1 294 -18 603 238 7 14 chrX 64065399 64065546 -112908594 + MLT1A2 LTR MaLR 1 146 -228 243 172 0 47 chrX 64065564 64065628 -112908512 - L1MCa LINE L1 -4358 2068 2008 917 171 109 6 chrX 64065656 64065831 -112908309 + MLT1A2 LTR MaLR 182 374 0 237 65 0 0 chrX 64065857 64065888 -112908252 + (CA)n Simple_repeat Simple_repeat 2 32 0 548 286 204 54 chrX 64066470 64066991 -112907149 - L3 LINE CR1 -187 1390 792 1008 272 98 50 chrX 64067395 64067877 -112906263 + MLT1D LTR MaLR 1 505 0 217 323 0 0 chrX 64068066 64068128 -112906012 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 9598 191 41 40 chrX 64068306 64070203 -112903937 + L1M1 LINE L1 19 1912 -5653 2129 144 47 8 chrX 64070203 64070564 -112903576 + THE1C LTR MaLR 1 375 0 8819 154 38 9 chrX 64070564 64072099 -112902041 + THE1C-int LTR MaLR 1 1580 0 1801 174 50 8 chrX 64072099 64072456 -112901684 + THE1C LTR MaLR 1 372 -3 9598 191 41 40 chrX 64072456 64072575 -112901565 + L1M1 LINE L1 1911 2040 -5525 5763 207 48 24 chrX 64072561 64075296 -112898844 + L1M1 LINE L1 2597 5405 -2160 * 15974 197 19 16 chrX 64075298 64082539 -112891601 + L1MA2 LINE L1 452 7723 0 7111 36 0 0 chrX 64082592 64083442 -112890698 - L1P LINE L1 -1908 4238 3389 7708 16 1 0 chrX 64083442 64084470 -112889670 + L1PA3 LINE L1 5130 6158 0 768 184 111 5 chrX 64084470 64084687 -112889453 + L1M1 LINE L1 5620 5859 -1706 * 774 191 0 0 chrX 64084685 64084832 -112889308 - L1M4 LINE L1 -446 5738 5592 518 122 0 11 chrX 64084928 64085018 -112889122 + (TTCC)n Simple_repeat Simple_repeat 4 92 0 1672 182 3 29 chrX 64085021 64085328 -112888812 - AluJb SINE Alu -11 301 3 1995 246 46 25 chrX 64085332 64086052 -112888088 - L1M4 LINE L1 -3135 3509 2775 870 236 10 0 chrX 64086053 64086252 -112887888 - L1M4 LINE L1 -4819 1827 1627 * 1449 258 28 8 chrX 64086249 64086645 -112887495 - L1M4 LINE L1 -5758 784 381 346 324 18 0 chrX 64086714 64086825 -112887315 - MIR3 SINE MIR -5 203 91 319 268 7 131 chrX 64088546 64088699 -112885441 + L2 LINE L2 3176 3309 -4 1015 135 0 0 chrX 64088756 64088897 -112885243 + L1PA13 LINE L1 1 141 -6320 26896 114 6 7 chrX 64088899 64090133 -112884007 + L1PA13 LINE L1 1538 2773 -3696 477 50 0 0 chrX 64090133 64090193 -112883947 + (TA)n Simple_repeat Simple_repeat 1 60 0 26896 114 6 7 chrX 64090193 64093178 -112880962 + L1PA13 LINE L1 2773 5752 -717 6245 86 10 0 chrX 64093178 64094038 -112880102 + L1PA7 LINE L1 5281 6152 -2 737 142 39 0 chrX 64094716 64094843 -112879297 + L1PA13 LINE L1 6344 6475 -3 233 205 39 77 chrX 64095375 64095453 -112878687 + MLT1J2 LTR MaLR 67 141 -309 32289 50 7 2 chrX 64096543 64100616 -112873524 + L1P LINE L1 1 4092 -2054 521 17 0 0 chrX 64100891 64100950 -112873190 + (T)n Simple_repeat Simple_repeat 1 59 0 21649 120 19 4 chrX 64100950 64104795 -112869345 - L1P LINE L1 -964 5182 1277 10296 188 49 16 chrX 64104787 64106792 -112867348 - L1M1 LINE L1 -4629 2936 865 * 1030 250 71 18 chrX 64106797 64107216 -112866924 + L1MB3 LINE L1 2079 2521 -3861 3037 97 16 0 chrX 64107220 64107726 -112866414 - L1P LINE L1 -728 5426 4912 288 98 0 39 chrX 64107711 64107762 -112866378 + L1PA8 LINE L1 5443 5491 -640 * 1841 144 46 3 chrX 64107763 64108048 -112866092 + AluSx SINE Alu 1 297 -15 3345 84 118 0 chrX 64108048 64108533 -112865607 + L1PA8 LINE L1 5618 6159 -13 242 49 0 49 chrX 64108536 64108577 -112865563 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 4634 253 22 11 chrX 64108578 64110126 -112864014 + L1MB3 LINE L1 2519 4083 -2299 3930 222 40 15 chrX 64110132 64111692 -112862448 + L1MB2 LINE L1 4562 6144 -27 2326 245 31 16 chrX 64111731 64112473 -112861667 + L1MB3 LINE L1 4088 4840 -1542 4093 191 53 14 chrX 64112496 64113672 -112860468 + L1MB3 LINE L1 5207 6419 0 237 286 0 0 chrX 64113693 64113749 -112860391 - L2 LINE L2 -3 3269 3214 333 333 29 0 chrX 64113794 64113899 -112860241 + MIR3 SINE MIR 47 154 -54 327 318 75 46 chrX 64113905 64114078 -112860062 - MER5A DNA MER1_type -10 179 2 647 124 16 0 chrX 64114929 64115050 -112859090 + GA-rich Low_complexity Low_complexity 2 124 0 181 385 22 0 chrX 64116219 64116310 -112857830 - MIR3 SINE MIR -3 205 113 2299 108 0 0 chrX 64116781 64117088 -112857052 + AluSx SINE Alu 1 307 -5 1027 237 84 16 chrX 64117180 64117501 -112856639 + MER2 DNA MER2_type 2 344 0 238 231 46 46 chrX 64117541 64117606 -112856534 + L2 LINE L2 3207 3271 -1 1988 159 18 12 chrX 64117896 64118235 -112855905 - MER7A DNA MER2_type -7 339 1 1737 265 95 45 chrX 64119664 64120382 -112853758 - MER21B LTR ERV1 -109 754 1 336 380 95 25 chrX 64120595 64120911 -112853229 - L2 LINE L2 0 3272 2935 681 298 70 16 chrX 64121381 64121623 -112852517 + MLT1J LTR MaLR 20 274 -237 1245 227 69 17 chrX 64121632 64121980 -112852160 - MER93b LTR ERV1 -2 371 6 2193 103 3 0 chrX 64122007 64122289 -112851851 + AluSc SINE Alu 1 283 -26 7120 100 5 9 chrX 64122300 64123462 -112850678 - L1MA1 LINE L1 -5 6297 5141 239 256 139 12 chrX 64123583 64123669 -112850471 + MLT1J LTR MaLR 412 508 -3 342 272 78 21 chrX 64124228 64124419 -112849721 + L1MC5 LINE L1 7724 7925 -36 368 233 207 9 chrX 64131136 64131252 -112842888 + MER5A DNA MER1_type 45 183 -6 344 275 14 63 chrX 64131295 64131437 -112842703 - MER5B DNA MER1_type -29 149 15 1019 192 40 68 chrX 64132669 64132919 -112841221 - AluJo SINE Alu -43 269 27 25 0 0 0 chrX 64133392 64133417 -112840723 + AT_rich Low_complexity Low_complexity 1 25 0 225 349 157 42 chrX 64133972 64134138 -112840002 + MER5A DNA MER1_type 1 185 -4 213 371 74 55 chrX 64134231 64134557 -112839583 + L2 LINE L2 2918 3249 -23 2311 92 10 0 chrX 64134627 64134933 -112839207 + AluSc SINE Alu 1 309 0 32 0 0 0 chrX 64136246 64136278 -112837862 + AT_rich Low_complexity Low_complexity 1 32 0 204 303 53 40 chrX 64138610 64138686 -112835454 + L2 LINE L2 3188 3264 -49 22 0 0 0 chrX 64139650 64139672 -112834468 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chrX 64140901 64140933 -112833207 + AT_rich Low_complexity Low_complexity 1 32 0 804 280 105 32 chrX 64140939 64141378 -112832762 - MARNA DNA Mariner -71 515 45 551 358 17 0 chrX 64141383 64141556 -112832584 + MIR3 SINE MIR 27 202 -6 920 187 60 6 chrX 64141680 64141862 -112832278 + MIR SINE MIR 20 211 -51 21 0 0 0 chrX 64141873 64141894 -112832246 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 64141984 64142006 -112832134 + AT_rich Low_complexity Low_complexity 1 22 0 1657 114 11 30 chrX 64142321 64142592 -112831548 - L1MA1 LINE L1 -4 6298 6033 2500 81 0 0 chrX 64142619 64142926 -112831214 + AluSc SINE Alu 1 307 -2 389 116 0 43 chrX 64143408 64143477 -112830663 + MADE1 DNA Mariner 15 80 0 1050 217 13 4 chrX 64144120 64144355 -112829785 + MER96B DNA MER1_type? 1 237 -180 511 301 49 49 chrX 64145757 64145960 -112828180 + MIR SINE MIR 47 249 -13 553 298 23 6 chrX 64146673 64146844 -112827296 + MIR3 SINE MIR 21 194 -14 392 320 3 20 chrX 64147587 64147703 -112826437 - MIR SINE MIR -67 141 28 229 357 9 18 chrX 64148689 64148801 -112825339 - MIR SINE MIR -87 175 65 193 250 0 0 chrX 64149672 64149716 -112824424 + L2 LINE L2 3184 3227 -86 353 291 212 5 chrX 64149968 64150029 -112824111 + MIR SINE MIR 1 48 -214 601 221 0 14 chrX 64150029 64150169 -112823971 + L1MA10 LINE L1 6197 6334 0 353 291 212 5 chrX 64150169 64150310 -112823830 + MIR SINE MIR 48 245 -17 23 33 0 0 chrX 64152366 64152396 -112821744 + AT_rich Low_complexity Low_complexity 1 30 0 1382 209 47 11 chrX 64152702 64152980 -112821160 + AluJb SINE Alu 1 288 -24 344 319 8 8 chrX 64154230 64154349 -112819791 + MIR SINE MIR 25 143 -65 1015 74 34 17 chrX 64156430 64156439 -112817701 + (GAAA)n Simple_repeat Simple_repeat 1 187 0 1015 74 34 17 chrX 64156439 64156614 -112817526 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 531 0 0 0 chrX 64158054 64158113 -112816027 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1936 140 0 4 chrX 64158114 64158393 -112815747 - AluSx SINE Alu -32 280 3 450 94 0 0 chrX 64158764 64158828 -112815312 + (TA)n Simple_repeat Simple_repeat 1 64 0 478 306 67 1 chrX 64159377 64159557 -112814583 - MIR3 SINE MIR -9 199 8 270 0 0 0 chrX 64159785 64159815 -112814325 + (TA)n Simple_repeat Simple_repeat 2 31 0 511 259 18 47 chrX 64160567 64160737 -112813403 - MIR SINE MIR -19 243 79 23 33 0 0 chrX 64160867 64160897 -112813243 + AT_rich Low_complexity Low_complexity 1 30 0 226 299 11 23 chrX 64162280 64162367 -112811773 + Charlie4 DNA MER1_type 1876 1961 0 336 247 22 34 chrX 64162482 64162571 -112811569 - MIR3 SINE MIR -48 160 73 306 228 120 0 chrX 64162957 64163049 -112811091 - MIR SINE MIR -62 146 44 416 312 7 7 chrX 64163416 64163554 -112810586 - LTR67 LTR ERVL -12 545 408 561 115 0 0 chrX 64163830 64163917 -112810223 + (TA)n Simple_repeat Simple_repeat 2 88 0 2166 99 0 26 chrX 64164360 64164672 -112809468 + AluSc SINE Alu 5 308 -1 643 261 56 0 chrX 64165959 64166139 -112808001 - MLT1K LTR MaLR -6 582 393 263 288 18 72 chrX 64166140 64166251 -112807889 - MIR SINE MIR -85 177 73 627 290 97 81 chrX 64166461 64166979 -112807161 + L3 LINE CR1 748 1273 -304 208 274 88 10 chrX 64166992 64167094 -112807046 - MIR SINE MIR 0 262 153 1343 182 10 113 chrX 64167266 64167683 -112806457 + MLT1A2 LTR MaLR 1 374 0 32 91 0 0 chrX 64167831 64167919 -112806221 + AT_rich Low_complexity Low_complexity 1 88 0 715 315 98 0 chrX 64167947 64168182 -112805958 + MIR SINE MIR 5 262 0 1829 207 32 44 chrX 64168624 64169066 -112805074 - L1MB8 LINE L1 -27 6962 6516 2274 167 60 2 chrX 64169066 64169467 -112804673 - MSTB LTR MaLR 0 426 3 6366 196 37 59 chrX 64169469 64170808 -112803332 - MSTB-int LTR MaLR 0 1651 354 2549 27 0 13 chrX 64170808 64171108 -112803032 - AluY SINE Alu -15 296 1 6366 196 37 59 chrX 64171108 64171455 -112802685 - MSTB-int LTR MaLR -1297 354 1 2286 174 49 7 chrX 64171455 64171864 -112802276 - MSTB LTR MaLR 0 426 1 1829 207 32 44 chrX 64171864 64171915 -112802225 - L1MB8 LINE L1 -472 6517 6471 6821 138 40 13 chrX 64171916 64173104 -112801036 - Tigger3b DNA MER2_type -10 1221 1 2061 242 52 41 chrX 64173104 64174395 -112799745 - L1MB8 LINE L1 -536 6459 5183 3283 100 25 2 chrX 64174395 64174885 -112799255 - L1PA14 LINE L1 -2 6159 5659 2061 242 52 41 chrX 64174885 64177298 -112796842 - L1MB8 LINE L1 -1812 5183 2569 2181 106 0 14 chrX 64177342 64177634 -112796506 - AluSc SINE Alu -17 292 5 3996 202 52 4 chrX 64177706 64178887 -112795253 - L1PB4 LINE L1 -6 6150 4920 500 221 25 0 chrX 64178995 64179117 -112795023 + L1 LINE L1 4561 4685 -1461 7645 27 0 0 chrX 64179117 64180200 -112793940 + L1PA4 LINE L1 5069 6151 -4 6225 217 24 55 chrX 64180233 64181979 -112792161 + L1 LINE L1 2723 4408 -1738 405 0 0 0 chrX 64181979 64182024 -112792116 + (CA)n Simple_repeat Simple_repeat 2 46 0 6225 217 24 55 chrX 64182024 64182155 -112791985 + L1 LINE L1 4408 4542 -1604 1712 293 62 18 chrX 64182342 64183517 -112790623 - L1MB8 LINE L1 -4559 2400 1190 260 324 18 9 chrX 64183861 64183972 -112790168 - L1MB8 LINE L1 -5667 1188 1077 1841 156 58 19 chrX 64183998 64184357 -112789783 + THE1C LTR MaLR 3 375 0 2210 136 0 6 chrX 64184381 64184733 -112789407 + THE1C-int LTR MaLR 1 350 -1230 202 320 155 0 chrX 64185275 64185378 -112788762 - L2 LINE L2 -14 3299 3181 6616 124 24 80 chrX 64186063 64187287 -112786853 + THE1C-int LTR MaLR 426 1580 0 1431 185 41 77 chrX 64187287 64187676 -112786464 + THE1C LTR MaLR 1 375 0 2348 279 81 40 chrX 64187722 64188607 -112785533 - L1MB8 LINE L1 -5915 944 23 890 224 11 6 chrX 64188609 64188788 -112785352 + MER58A DNA MER1_type 45 224 0 497 294 71 12 chrX 64189797 64189967 -112784173 + MIR3 SINE MIR 5 184 -24 183 42 0 0 chrX 64190019 64190043 -112784097 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 237 250 21 125 chrX 64190549 64190693 -112783447 + MIR SINE MIR 124 252 -10 378 107 0 0 chrX 64191061 64191117 -112783023 + (TG)n Simple_repeat Simple_repeat 1 56 0 384 300 100 47 chrX 64193646 64193836 -112780304 - MIR SINE MIR 0 262 63 185 389 62 18 chrX 64194228 64194341 -112779799 - MIR SINE MIR -121 141 24 554 144 29 0 chrX 64194488 64194592 -112779548 + L1MB4 LINE L1 6074 6180 0 5029 79 5 0 chrX 64194811 64195483 -112778657 - L1PA8 LINE L1 0 6172 5498 356 250 19 9 chrX 64196152 64196260 -112777880 - MER113 DNA MER1_type? -53 468 360 268 266 53 0 chrX 64196263 64196376 -112777764 + L1MB5 LINE L1 2111 2229 -4155 374 254 67 36 chrX 64196394 64196646 -112777494 + L1MB5 LINE L1 3495 3753 -2629 465 109 42 34 chrX 64196646 64196765 -112777375 + GA-rich Low_complexity Low_complexity 1 120 0 3740 202 50 84 chrX 64196765 64197286 -112776854 + L1MB5 LINE L1 3746 4283 -2099 2377 65 0 19 chrX 64197286 64197596 -112776544 + AluY SINE Alu 1 304 -7 3740 202 50 84 chrX 64197596 64198404 -112775736 + L1MB5 LINE L1 4283 5029 -1353 4010 201 64 7 chrX 64198421 64199550 -112774590 + L1MB5 LINE L1 5207 6403 -7 366 262 25 57 chrX 64199562 64199684 -112774456 + MER5B DNA MER1_type 60 177 -1 2038 185 101 47 chrX 64200008 64200047 -112774093 - MLT2B1 LTR ERVL 0 520 485 2082 178 8 97 chrX 64200047 64200581 -112773559 - MER66B LTR ERV1 0 486 1 2038 185 101 47 chrX 64200581 64201034 -112773106 - MLT2B1 LTR ERVL -35 485 1 234 292 35 11 chrX 64201335 64201429 -112772711 + MIR SINE MIR 46 142 -66 3359 189 71 7 chrX 64201807 64202149 -112771991 - L1MA4A LINE L1 -23 6131 5812 369 0 0 0 chrX 64202149 64202190 -112771950 + (TG)n Simple_repeat Simple_repeat 2 42 0 3359 189 71 7 chrX 64202190 64202593 -112771547 - L1MA4A LINE L1 -342 5812 5354 2744 74 82 5 chrX 64202801 64203205 -112770935 - L1PA13 LINE L1 -5 6158 5724 585 313 123 32 chrX 64203742 64204372 -112769768 - L2 LINE L2 -2 3311 2618 383 302 36 36 chrX 64204915 64205054 -112769086 - MIR3 SINE MIR -57 151 13 190 247 26 0 chrX 64205321 64205398 -112768742 + CT-rich Low_complexity Low_complexity 3 81 0 2090 143 0 0 chrX 64205951 64206252 -112767888 + AluSx SINE Alu 3 303 -9 435 354 51 5 chrX 64206332 64206522 -112767618 - MIR SINE MIR -29 233 37 788 56 0 9 chrX 64206783 64206890 -112767250 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chrX 64206983 64207007 -112767133 + AT_rich Low_complexity Low_complexity 1 24 0 509 264 8 0 chrX 64207026 64207151 -112766989 - MIR3 SINE MIR -14 194 69 205 238 31 163 chrX 64207464 64207624 -112766516 + MIR3 SINE MIR 16 154 -54 38 22 0 0 chrX 64207734 64207779 -112766361 + AT_rich Low_complexity Low_complexity 1 45 0 223 130 14 29 chrX 64207784 64207853 -112766287 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 1039 84 0 0 chrX 64208165 64208307 -112765833 + AluY SINE Alu 167 308 -3 198 128 0 0 chrX 64208511 64208550 -112765590 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 199 267 0 0 chrX 64209610 64209655 -112764485 - L2 LINE L2 -7 3306 3262 423 295 13 40 chrX 64210676 64210825 -112763315 - MIR SINE MIR -70 192 48 327 25 0 0 chrX 64211338 64211378 -112762762 + (TG)n Simple_repeat Simple_repeat 1 40 0 2337 93 0 7 chrX 64211814 64212116 -112762024 + AluSg SINE Alu 1 300 -10 2317 109 0 0 chrX 64212352 64212664 -112761476 + AluSq SINE Alu 1 312 -1 591 264 29 7 chrX 64212700 64212840 -112761300 - MIR3 SINE MIR -46 162 20 26 0 0 0 chrX 64213247 64213273 -112760867 + AT_rich Low_complexity Low_complexity 1 26 0 7884 14 0 0 chrX 64214180 64215274 -112758866 + L1PA2 LINE L1 5055 6155 0 2158 55 0 0 chrX 64217297 64217553 -112756587 + AluY SINE Alu 1 256 -55 333 0 0 0 chrX 64217562 64217599 -112756541 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 427 233 210 6 chrX 64217604 64217780 -112756360 - L3 LINE CR1 -199 1378 1167 25 65 0 0 chrX 64218652 64218698 -112755442 + AT_rich Low_complexity Low_complexity 1 46 0 457 293 29 7 chrX 64218723 64218863 -112755277 - MIR SINE MIR -3 259 117 187 344 0 0 chrX 64219109 64219170 -112754970 + L2 LINE L2 3210 3270 -2 248 324 50 22 chrX 64219509 64219648 -112754492 - MIR3 SINE MIR -2 206 64 231 218 0 0 chrX 64220023 64220078 -112754062 + (TG)n Simple_repeat Simple_repeat 2 56 0 690 242 134 41 chrX 64220092 64220510 -112753630 - L1ME4a LINE L1 -105 6016 5560 880 154 98 5 chrX 64220648 64220862 -112753278 - L1MA7 LINE L1 -12 6279 6046 648 193 240 0 chrX 64220949 64221099 -112753041 - MER5A DNA MER1_type -3 186 1 26 74 0 0 chrX 64221832 64221886 -112752254 + AT_rich Low_complexity Low_complexity 1 54 0 283 289 196 40 chrX 64222003 64222228 -112751912 + MIR SINE MIR 2 261 -1 423 301 72 40 chrX 64222408 64222648 -112751492 - MIR SINE MIR -1 261 8 25880 130 10 15 chrX 64223628 64227002 -112747138 - L1PA8 LINE L1 0 6487 3179 2111 136 3 0 chrX 64227002 64227311 -112746829 - AluSq SINE Alu -3 310 1 25880 130 10 15 chrX 64227311 64229194 -112744946 - L1PA8 LINE L1 -3308 3179 1289 1455 135 8 0 chrX 64229296 64229533 -112744607 - L1PA8 LINE L1 -5106 1355 1117 670 163 12 38 chrX 64229534 64229688 -112744452 + THE1C LTR MaLR 245 375 0 395 372 100 37 chrX 64229697 64229985 -112744155 + L2 LINE L2 1977 2245 -1027 300 111 0 0 chrX 64229985 64230030 -112744110 + (CA)n Simple_repeat Simple_repeat 2 46 0 395 372 100 37 chrX 64230030 64230163 -112743977 + L2 LINE L2 2245 2368 -904 516 254 23 0 chrX 64230163 64230293 -112743847 - MER94 DNA DNA 0 134 2 395 372 100 37 chrX 64230293 64230917 -112743223 + L2 LINE L2 2368 3091 -181 297 185 0 0 chrX 64231338 64231403 -112742737 + (TG)n Simple_repeat Simple_repeat 2 66 0 253 167 42 14 chrX 64231423 64231495 -112742645 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 441 289 43 10 chrX 64231527 64231735 -112742405 + L1MDa LINE L1 1554 1768 -4772 240 256 168 0 chrX 64231818 64231943 -112742197 + L1MDa LINE L1 1921 2066 -4474 3543 253 52 46 chrX 64231957 64232232 -112741908 + L1MA4 LINE L1 15 287 -5750 304 87 0 0 chrX 64232232 64232278 -112741862 - LTR5 LTR ERVK -164 805 760 3543 253 52 46 chrX 64232278 64232800 -112741340 + L1MA4 LINE L1 287 805 -5232 233 73 0 24 chrX 64232800 64232841 -112741299 + (CA)n Simple_repeat Simple_repeat 2 41 0 3543 253 52 46 chrX 64232841 64233221 -112740919 + L1MA4 LINE L1 805 1181 -4856 2275 119 0 0 chrX 64233221 64233533 -112740607 + AluSx SINE Alu 1 312 0 3543 253 52 46 chrX 64233533 64234265 -112739875 + L1MA4 LINE L1 1181 1971 -4066 7927 227 36 8 chrX 64234266 64235921 -112738219 + L1 LINE L1 12 1711 -5854 912 152 0 6 chrX 64235919 64236084 -112738056 + L1 LINE L1 2516 2679 -4886 * 3353 195 30 5 chrX 64236084 64236831 -112737309 + L1 LINE L1 5659 6423 -1142 * 9070 206 45 25 chrX 64236815 64237162 -112736978 + L1MA4 LINE L1 3038 3377 -3105 2021 146 16 0 chrX 64237162 64237470 -112736670 + AluSq SINE Alu 1 313 0 9070 206 45 25 chrX 64237470 64238790 -112735350 + L1MA4 LINE L1 3377 4670 -1812 2248 120 26 9 chrX 64238790 64239139 -112735001 - THE1A LTR MaLR 0 355 1 9070 206 45 25 chrX 64239139 64240813 -112733327 + L1MA4 LINE L1 4670 6450 -32 1239 262 49 42 chrX 64241096 64242118 -112732022 + L1MEc LINE L1 1605 2586 -3629 * 6895 32 3 1 chrX 64242108 64242956 -112731184 - L1P LINE L1 -3454 2692 1843 7444 36 0 0 chrX 64242974 64244031 -112730109 - L1PA3 LINE L1 -3 6152 5097 8788 30 0 0 chrX 64244033 64245083 -112729057 + L1PA3 LINE L1 4038 5087 -1059 4094 44 0 0 chrX 64245081 64245584 -112728556 - L1P LINE L1 -4288 1858 1356 * 941 72 22 0 chrX 64245598 64245737 -112728403 + L1PA4 LINE L1 6014 6155 0 2882 289 29 14 chrX 64245741 64247012 -112727128 + L1MEc LINE L1 2579 3868 -2347 17799 249 29 15 chrX 64247089 64247311 -112726829 + ERVL LTR ERVL 945 1162 -4602 249 83 0 0 chrX 64247311 64247347 -112726793 + (TTGG)n Simple_repeat Simple_repeat 4 39 0 17799 249 29 15 chrX 64247347 64249200 -112724940 + ERVL LTR ERVL 1162 2988 -2776 2030 172 8 30 chrX 64249200 64249573 -112724567 + MLT1A1 LTR MaLR 1 365 0 17799 249 29 15 chrX 64249573 64251840 -112722300 + ERVL LTR ERVL 2988 5348 -416 465 322 40 39 chrX 64251841 64252237 -112721903 + L1M4 LINE L1 7 1198 -5900 5139 198 75 18 chrX 64252251 64253564 -112720576 - L1 LINE L1 -1120 5026 3640 2286 173 23 21 chrX 64253564 64253991 -112720149 - MSTC LTR MaLR 0 428 1 239 291 25 0 chrX 64253991 64254070 -112720070 - MSTC-int LTR MaLR 0 1735 1655 24 53 0 0 chrX 64254070 64254108 -112720032 + AT_rich Low_complexity Low_complexity 1 38 0 5906 163 20 17 chrX 64254109 64256205 -112717935 - L1PB1 LINE L1 -44 6107 4003 466 176 227 0 chrX 64256209 64256328 -112717812 - MSTC-int LTR MaLR -72 1579 1434 376 279 0 0 chrX 64256441 64256520 -112717620 + MER21B LTR ERV1 12 90 -773 2205 269 45 37 chrX 64256573 64257276 -112716864 + MER21B LTR ERV1 98 806 -57 3918 251 58 42 chrX 64257309 64259091 -112715049 + L1M4 LINE L1 3687 5496 -1671 1754 222 36 19 chrX 64259123 64259537 -112714603 + L1 LINE L1 24 444 -7121 1727 113 71 0 chrX 64259530 64259796 -112714344 + THE1A-int LTR MaLR 1295 1579 -1 * 2551 102 8 0 chrX 64259797 64260149 -112713991 + THE1A LTR MaLR 1 355 0 10205 192 12 2 chrX 64260151 64263263 -112710877 + L1PA14 LINE L1 3085 6158 -3 5084 145 33 5 chrX 64263264 64264147 -112709993 + L1MA2 LINE L1 5390 6297 -7 928 245 24 9 chrX 64264183 64264577 -112709563 + L1 LINE L1 5189 6079 -1486 181 246 92 46 chrX 64264882 64264947 -112709193 - L2 LINE L2 -4 3268 3201 216 277 152 45 chrX 64267751 64267863 -112706277 - L2 LINE L2 0 3313 3190 195 328 30 99 chrX 64268100 64268157 -112705983 + L2 LINE L2 3149 3208 -64 2731 124 2 53 chrX 64268157 64268610 -112705530 + MER57B LTR ERV1 1 430 -4 195 328 30 99 chrX 64268610 64268683 -112705457 + L2 LINE L2 3208 3270 -2 40687 67 6 4 chrX 64268806 64274938 -112699202 + L1PA5 LINE L1 11 6154 0 1840 149 26 0 chrX 64275030 64275338 -112698802 - L1PA15 LINE L1 -8 6157 5842 2651 207 13 9 chrX 64275339 64276246 -112697894 - L1PA15 LINE L1 -567 5598 4692 5938 183 14 27 chrX 64276264 64276471 -112697669 - L1MA1 LINE L1 0 6302 6094 1856 161 3 0 chrX 64276471 64276756 -112697384 - AluSx SINE Alu -26 286 1 5938 183 14 27 chrX 64276756 64278640 -112695500 - L1MA1 LINE L1 -208 6094 4188 2187 183 39 7 chrX 64278640 64279055 -112695085 + MSTA LTR MaLR 1 428 0 5938 183 14 27 chrX 64279055 64279338 -112694802 - L1MA1 LINE L1 -2114 4188 3959 7238 49 0 2 chrX 64279338 64280618 -112693522 - L1PA4 LINE L1 0 6155 4910 5938 183 14 27 chrX 64280618 64280654 -112693486 - L1MA1 LINE L1 -2343 3959 3924 1121 203 83 8 chrX 64280663 64281038 -112693102 - L1MA1 LINE L1 -2796 3350 2948 13299 101 19 8 chrX 64281043 64283010 -112691130 - MER61-int LTR ERV1 -1370 3847 1859 231 222 0 0 chrX 64283014 64283068 -112691072 + T-rich Low_complexity Low_complexity 1 54 0 2176 137 16 14 chrX 64283068 64283434 -112690706 - L1PB1 LINE L1 -1 6150 5784 5539 190 30 3 chrX 64283503 64285289 -112688851 - L1PB1 LINE L1 -380 5771 3934 7401 179 9 21 chrX 64285289 64287576 -112686564 + L1PA13 LINE L1 3894 6158 -5 28484 125 21 61 chrX 64287664 64293246 -112680894 + L1PA7 LINE L1 14 5286 -868 228 35 0 0 chrX 64293246 64293275 -112680865 + (CAA)n Simple_repeat Simple_repeat 3 31 0 28484 125 21 61 chrX 64293275 64294109 -112680031 + L1PA7 LINE L1 5286 6151 -3 4731 139 15 3 chrX 64294184 64295589 -112678551 - L1PA16 LINE L1 -1 6165 4717 387 127 0 0 chrX 64295589 64295652 -112678488 - L1 LINE L1 -1980 4166 4104 * 973 275 29 29 chrX 64295650 64296162 -112677978 + L1M4 LINE L1 2787 3298 -2848 2089 190 7 14 chrX 64296649 64297091 -112677049 - L1PB3 LINE L1 -2 6152 5714 2184 152 13 0 chrX 64297092 64297547 -112676593 - L1PB3 LINE L1 -517 5637 5178 303 305 121 0 chrX 64297560 64297701 -112676439 - MIR SINE MIR -74 188 31 398 287 72 39 chrX 64298468 64298649 -112675491 - MIR3 SINE MIR -3 205 19 303 283 100 0 chrX 64299052 64299172 -112674968 + MIR SINE MIR 97 228 -34 3183 95 11 0 chrX 64299937 64300378 -112673762 - L1PA11 LINE L1 -5 6169 5724 585 313 123 32 chrX 64300915 64301545 -112672595 - L2 LINE L2 -2 3311 2618 383 302 36 36 chrX 64302088 64302227 -112671913 - MIR3 SINE MIR -57 151 13 190 247 26 0 chrX 64302494 64302571 -112671569 + CT-rich Low_complexity Low_complexity 3 81 0 2090 143 0 0 chrX 64303124 64303425 -112670715 + AluSx SINE Alu 3 303 -9 435 354 51 5 chrX 64303505 64303695 -112670445 - MIR SINE MIR -29 233 37 788 56 0 9 chrX 64303956 64304063 -112670077 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 24 0 0 0 chrX 64304156 64304180 -112669960 + AT_rich Low_complexity Low_complexity 1 24 0 509 264 8 0 chrX 64304199 64304324 -112669816 - MIR3 SINE MIR -14 194 69 205 238 31 163 chrX 64304637 64304797 -112669343 + MIR3 SINE MIR 16 154 -54 38 22 0 0 chrX 64304907 64304952 -112669188 + AT_rich Low_complexity Low_complexity 1 45 0 223 130 14 29 chrX 64304957 64305026 -112669114 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 1039 84 0 0 chrX 64305338 64305480 -112668660 + AluY SINE Alu 167 308 -3 198 128 0 0 chrX 64305684 64305723 -112668417 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1520 217 9 32 chrX 64306366 64306920 -112667220 - L1M3 LINE L1 -669 5499 4954 10461 134 19 2 chrX 64306920 64309440 -112664700 - L1PA8 LINE L1 0 6487 3955 469 90 0 0 chrX 64309444 64309511 -112664629 + AluSp/q SINE Alu 235 301 -12 2334 201 23 50 chrX 64309536 64310349 -112663791 - L1PA8 LINE L1 -4734 1141 717 2648 180 20 16 chrX 64310354 64310853 -112663287 - L1PA8 LINE L1 -5372 503 3 366 227 17 67 chrX 64310899 64311018 -112663122 - L1M3 LINE L1 -1207 4939 4827 3872 230 59 49 chrX 64311029 64312441 -112661699 - L1M4 LINE L1 -822 5324 3899 31 58 0 0 chrX 64312468 64312520 -112661620 + AT_rich Low_complexity Low_complexity 1 52 0 1317 179 43 25 chrX 64312612 64312892 -112661248 + MLT2B1 LTR ERVL 1 285 -235 12719 219 32 22 chrX 64313049 64314667 -112659473 + ERVL-B2 LTR ERVL 26 1684 -4080 7509 31 1 1 chrX 64314667 64315611 -112658529 + L1PA3 LINE L1 5209 6152 -3 12719 219 32 22 chrX 64315611 64316748 -112657392 + ERVL-B2 LTR ERVL 1684 2808 -2956 2125 224 41 7 chrX 64316768 64317233 -112656907 + ERVL-B2 LTR ERVL 3708 4188 -1576 * 2484 176 20 54 chrX 64317219 64317776 -112656364 + ERVL-B2 LTR ERVL 5227 5764 0 945 189 62 25 chrX 64317776 64317862 -112656278 + Ricksha DNA DNA 342 436 -818 1974 148 83 9 chrX 64317862 64318201 -112655939 - THE1B LTR MaLR 0 364 1 10908 122 7 1 chrX 64318201 64319771 -112654369 - THE1B-int LTR MaLR 0 1580 1 1405 141 82 35 chrX 64319772 64320062 -112654078 - THE1B LTR MaLR -1 363 1 * 1787 196 30 61 chrX 64320062 64320490 -112653650 + MLT2B2 LTR ERVL 88 502 -13 948 157 15 11 chrX 64321448 64321710 -112652430 + GA-rich Low_complexity Low_complexity 1 263 0 1929 172 94 10 chrX 64321743 64322138 -112652002 + MSTA LTR MaLR 1 428 0 8577 190 33 11 chrX 64322138 64323753 -112650387 + MSTA-int LTR MaLR 1 1651 0 1965 151 118 23 chrX 64323753 64324144 -112649996 + MSTA LTR MaLR 1 428 0 585 240 106 28 chrX 64324170 64324453 -112649687 - L1ME4a LINE L1 -201 5920 5616 411 304 95 24 chrX 64324549 64324717 -112649423 - MIR SINE MIR -63 199 20 258 275 0 0 chrX 64325113 64325193 -112648947 + CT-rich Low_complexity Low_complexity 1 80 0 353 329 94 13 chrX 64325427 64325576 -112648564 + MIR SINE MIR 34 194 -68 589 308 76 0 chrX 64325659 64325857 -112648283 + MIR SINE MIR 40 252 -10 246 309 26 22 chrX 64326583 64326813 -112647327 - L1ME4a LINE L1 -743 5403 5173 719 363 109 1 chrX 64326848 64327368 -112646772 + L2 LINE L2 2738 3311 -2 499 308 91 19 chrX 64327462 64327770 -112646370 - L1ME4a LINE L1 -230 5891 5562 458 303 20 82 chrX 64328258 64328453 -112645687 - MIR SINE MIR -71 191 9 16351 75 2 1 chrX 64329249 64332276 -112641864 + L1PA6 LINE L1 3136 6154 0 1823 255 27 29 chrX 64332276 64332943 -112641197 + L1P LINE L1 3117 3782 -2364 2191 197 26 0 chrX 64332946 64333363 -112640777 + MSTA LTR MaLR 1 428 0 4287 210 8 37 chrX 64333363 64334326 -112639814 + MSTA-int LTR MaLR 1 935 -716 2569 196 35 0 chrX 64334339 64334828 -112639312 + MSTA-int LTR MaLR 1144 1649 -2 2331 176 14 19 chrX 64334838 64335264 -112638876 + MSTA LTR MaLR 3 426 -2 2411 248 7 2 chrX 64335269 64335879 -112638261 + L1 LINE L1 3784 4396 -1750 2149 246 59 20 chrX 64335882 64336594 -112637546 + L1 LINE L1 4518 5257 -889 4362 64 25 47 chrX 64336594 64337648 -112636492 + MER11A LTR ERVK 1 1266 0 4534 182 20 16 chrX 64337650 64338557 -112635583 + L1PA16 LINE L1 5254 6163 -3 234 274 121 0 chrX 64339061 64339218 -112634922 - L1ME4a LINE L1 -4 6117 5942 21 36 0 0 chrX 64339333 64339361 -112634779 + AT_rich Low_complexity Low_complexity 1 28 0 531 252 29 0 chrX 64339583 64339603 -112634537 + MIR SINE MIR 37 55 -183 2109 110 17 0 chrX 64339603 64339894 -112634246 + AluSx SINE Alu 1 296 -16 531 252 29 0 chrX 64339894 64340009 -112634131 + MIR SINE MIR 55 176 -62 1805 140 0 28 chrX 64340033 64340319 -112633821 + AluSx SINE Alu 1 278 -34 1263 11 17 28 chrX 64340321 64340835 -112633305 + (GAAA)n Simple_repeat Simple_repeat 1 508 0 1572 210 52 9 chrX 64341306 64341635 -112632505 + MSTB LTR MaLR 1 343 -83 1192 75 0 0 chrX 64341715 64341876 -112632264 - L1MA1 LINE L1 0 6302 6142 979 121 0 29 chrX 64341887 64342027 -112632113 - AluSg/x SINE Alu -43 269 134 233 61 0 0 chrX 64342027 64342060 -112632080 - L1MA1 LINE L1 -146 6156 6124 423 310 18 44 chrX 64342700 64342929 -112631211 + MARNA DNA Mariner 10 232 -354 332 287 84 31 chrX 64343813 64343937 -112630203 + MIR SINE MIR 62 202 -60 1021 115 6 0 chrX 64343937 64344094 -112630046 + L1PB1 LINE L1 5992 6149 -2 332 287 84 31 chrX 64344094 64344148 -112629992 + MIR SINE MIR 202 252 -10 441 242 76 8 chrX 64346853 64346985 -112627155 - MIR3 SINE MIR -14 194 54 546 294 31 31 chrX 64347592 64347786 -112626354 - MIR SINE MIR -62 200 7 1001 129 0 0 chrX 64347839 64347986 -112626154 - L1PB3 LINE L1 -185 5969 5823 294 29 0 0 chrX 64348812 64348847 -112625293 + (TC)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chrX 64348846 64348877 -112625263 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 460 335 46 32 chrX 64349035 64349316 -112624824 + L2 LINE L2 2396 2680 -634 394 253 162 26 chrX 64349339 64349493 -112624647 - MIR SINE MIR -4 258 84 1713 192 154 24 chrX 64350451 64350957 -112623183 + LTR49 LTR ERV1 1 572 -23 189 379 112 9 chrX 64351848 64352062 -112622078 - L2 LINE L2 -398 2916 2681 1725 171 0 27 chrX 64352062 64352361 -112621779 + AluJb SINE Alu 1 291 -21 469 234 27 0 chrX 64352471 64352582 -112621558 + MER81 DNA DNA 1 114 0 2610 98 16 0 chrX 64354113 64354479 -112619661 + L1PA11 LINE L1 5798 6169 -5 303 283 100 0 chrX 64355244 64355364 -112618776 - MIR SINE MIR -34 228 97 398 287 72 39 chrX 64355767 64355948 -112618192 + MIR3 SINE MIR 19 205 -3 303 305 121 0 chrX 64356715 64356856 -112617284 + MIR SINE MIR 31 188 -74 2184 152 13 0 chrX 64356869 64357324 -112616816 + L1PB3 LINE L1 5178 5637 -517 2089 190 7 14 chrX 64357325 64357767 -112616373 + L1PB3 LINE L1 5714 6152 -2 580 293 22 28 chrX 64358594 64358775 -112615365 - MIR3 SINE MIR -26 182 3 2051 130 3 3 chrX 64359001 64359301 -112614839 - AluSx SINE Alu -11 301 2 452 294 78 0 chrX 64360102 64360255 -112613885 + MIR3 SINE MIR 37 201 -7 325 279 174 25 chrX 64361252 64361453 -112612687 + L2 LINE L2 3083 3313 0 2253 115 6 35 chrX 64362302 64362668 -112611472 + THE1A LTR MaLR 1 355 0 27 73 0 0 chrX 64363906 64363961 -112610179 + AT_rich Low_complexity Low_complexity 1 55 0 681 311 17 13 chrX 64364398 64364633 -112609507 - MIR SINE MIR 0 262 27 2950 188 55 11 chrX 64365681 64366389 -112607751 - Charlie1a DNA MER1_type -11 1444 706 11612 98 4 3 chrX 64366393 64368923 -112605217 + L1PA7 LINE L1 3631 6154 0 3909 162 15 21 chrX 64368959 64370174 -112603966 + L1M1 LINE L1 4555 5766 -534 5729 224 91 53 chrX 64370184 64371793 -112602347 + L1PA13 LINE L1 1 1671 -5116 4965 115 22 0 chrX 64371791 64372546 -112601594 + L1PA13 LINE L1 5392 6163 0 * 970 192 11 0 chrX 64372600 64372777 -112601363 - MER58B DNA MER1_type -24 317 139 182 215 46 77 chrX 64373324 64373389 -112600751 + L2 LINE L2 3206 3268 -4 180 333 35 23 chrX 64373776 64373863 -112600277 + MIR SINE MIR 121 208 -54 252 238 10 109 chrX 64374837 64374869 -112599271 + L1MC/D LINE L1 5563 5597 -2211 2227 80 0 14 chrX 64374869 64375200 -112598940 - AluY SINE Alu 0 327 1 252 238 10 109 chrX 64375200 64375267 -112598873 + L1MC/D LINE L1 5597 5653 -2155 268 250 50 74 chrX 64375411 64375574 -112598566 - MIR SINE MIR -36 226 79 974 174 34 0 chrX 64375584 64375762 -112598378 + L1PA16 LINE L1 5974 6157 -9 2275 127 14 27 chrX 64376057 64376426 -112597714 + THE1B LTR MaLR 1 364 0 9626 109 101 0 chrX 64376426 64377861 -112596279 + THE1B-int LTR MaLR 1 1580 0 2165 146 11 30 chrX 64377861 64378232 -112595908 + THE1B LTR MaLR 1 364 0 428 175 10 10 chrX 64378468 64378571 -112595569 - L1MA9 LINE L1 -1 6311 6209 900 209 132 33 chrX 64378584 64378857 -112595283 - L1MD2 LINE L1 -246 6113 5814 2174 134 19 11 chrX 64378880 64379253 -112594887 - L1PB1 LINE L1 0 6151 5776 677 76 0 80 chrX 64379253 64379505 -112594635 + (TA)n Simple_repeat Simple_repeat 1 231 0 3351 193 8 4 chrX 64379509 64379534 -112594606 - L1PB1 LINE L1 -361 5790 5767 974 31 0 67 chrX 64379534 64379727 -112594413 + (TA)n Simple_repeat Simple_repeat 1 180 0 3351 193 8 4 chrX 64379727 64380878 -112593262 - L1PB1 LINE L1 -384 5767 4613 4420 185 11 25 chrX 64380898 64381570 -112592570 + L1MB8 LINE L1 3625 4282 -1864 2572 56 0 0 chrX 64381570 64381872 -112592268 + AluY SINE Alu 1 302 -9 4420 185 11 25 chrX 64381872 64382160 -112591980 + L1MB8 LINE L1 4282 4572 -1574 203 184 0 0 chrX 64383471 64383509 -112590631 + (TAA)n Simple_repeat Simple_repeat 2 39 0 313 0 0 0 chrX 64384296 64384336 -112589804 + L1PA3 LINE L1 6113 6152 -3 257 51 26 0 chrX 64386324 64386363 -112587777 + (CA)n Simple_repeat Simple_repeat 2 41 0 2402 125 3 16 chrX 64386546 64386915 -112587225 + THE1B LTR MaLR 1 364 0 270 56 0 0 chrX 64386973 64387009 -112587131 + (CA)n Simple_repeat Simple_repeat 2 37 0 2299 198 51 16 chrX 64387009 64387559 -112586581 + L1MB8 LINE L1 5332 5900 -278 1618 236 25 15 chrX 64387578 64387605 -112586535 - MLT2D LTR ERVL -14 383 358 339 113 0 0 chrX 64387605 64387658 -112586482 + (TG)n Simple_repeat Simple_repeat 2 54 0 1618 236 25 15 chrX 64387658 64388043 -112586097 - MLT2D LTR ERVL -39 358 1 1207 190 34 15 chrX 64388044 64388313 -112585827 + L1MB8 LINE L1 5900 6173 -5 270 294 35 0 chrX 64388525 64388610 -112585530 - MIR SINE MIR -5 257 170 199 275 0 72 chrX 64388858 64388927 -112585213 + L2 LINE L2 2990 3053 -219 184 351 39 0 chrX 64389053 64389130 -112585010 - L2 LINE L2 -15 3298 3219 282 360 97 17 chrX 64389286 64389461 -112584679 - L2 LINE L2 -217 3055 2867 409 188 30 30 chrX 64389730 64389831 -112584309 - Charlie7 DNA MER1_type -2510 102 2 197 352 56 14 chrX 64389893 64390035 -112584105 - L2 LINE L2 -664 2650 2503 2881 246 32 40 chrX 64390492 64390872 -112583268 + L1 LINE L1 3266 3647 -2499 2118 150 132 5 chrX 64390872 64391252 -112582888 + MSTA LTR MaLR 1 428 0 2881 246 32 40 chrX 64391252 64391955 -112582185 + L1 LINE L1 3647 4342 -1804 1092 182 25 4 chrX 64391955 64392191 -112581949 + L1MB3 LINE L1 5935 6175 -8 2881 246 32 40 chrX 64392191 64392266 -112581874 + L1 LINE L1 4342 4416 -1730 14805 171 61 9 chrX 64392310 64393445 -112580695 + L1MB3 LINE L1 721 1795 -5770 2296 132 25 6 chrX 64393445 64393802 -112580338 - THE1B LTR MaLR 0 364 1 14805 171 61 9 chrX 64393802 64395504 -112578636 + L1MB3 LINE L1 1795 3707 -3858 2727 223 74 23 chrX 64395505 64396193 -112577947 + L1MA2 LINE L1 20 671 -6894 * 10569 205 30 12 chrX 64396191 64400206 -112573934 + L1MA2 LINE L1 3303 7530 -193 381 144 0 5 chrX 64400208 64400276 -112573864 - Alu SINE Alu -6 296 238 1117 106 22 6 chrX 64400282 64400461 -112573679 + L1MA3 LINE L1 6124 6305 0 3938 219 44 16 chrX 64400463 64402153 -112571987 + L1MB3 LINE L1 5865 7599 -3 28 0 0 0 chrX 64402153 64402181 -112571959 + AT_rich Low_complexity Low_complexity 1 28 0 4062 88 7 0 chrX 64403021 64403587 -112570553 - L1PA13 LINE L1 -8 6155 5586 509 313 93 34 chrX 64403730 64404021 -112570119 + L2 LINE L2 2921 3228 -85 713 152 0 0 chrX 64404252 64404377 -112569763 - L1MA2 LINE L1 0 6304 6180 3620 21 0 0 chrX 64405753 64406171 -112567969 + L1PA3 LINE L1 5737 6154 -1 204 200 0 0 chrX 64406248 64406298 -112567842 + CT-rich Low_complexity Low_complexity 1 50 0 462 126 68 0 chrX 64406317 64406420 -112567720 + T-rich Low_complexity Low_complexity 3 112 0 192 77 0 0 chrX 64406439 64406465 -112567675 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 1007 115 0 0 chrX 64406498 64406646 -112567494 + THE1B-int LTR MaLR 1433 1580 0 2006 161 8 35 chrX 64406655 64407021 -112567119 + THE1B LTR MaLR 9 364 0 1736 311 59 44 chrX 64407021 64407728 -112566412 + L1PA15 LINE L1 133 850 -5937 13421 236 20 17 chrX 64407877 64413405 -112560735 + L1PA15 LINE L1 1259 6815 -1 246 384 38 15 chrX 64413561 64413694 -112560446 + L2 LINE L2 3133 3268 -4 2423 170 13 60 chrX 64413921 64414475 -112559665 - L1MA10 LINE L1 -26 6308 5781 3954 174 8 6 chrX 64414484 64415210 -112558930 - L1PB4 LINE L1 -1 6155 5428 454 231 48 19 chrX 64415210 64415314 -112558826 + FLAM_A SINE Alu 15 121 -21 2544 188 45 0 chrX 64415325 64415895 -112558245 - L1MA10 LINE L1 -555 5779 5185 12988 154 25 27 chrX 64415896 64418315 -112555825 - Tigger1 DNA MER2_type 0 2418 5 2301 88 7 0 chrX 64418894 64419188 -112554952 - AluSp SINE Alu -14 299 4 375 317 45 54 chrX 64419205 64419426 -112554714 - MLT1J2 LTR MaLR -47 403 185 268 296 53 61 chrX 64419589 64419721 -112554419 - MIR3 SINE MIR -73 135 5 612 272 18 12 chrX 64419803 64419972 -112554168 - MIR SINE MIR -90 172 3 372 77 0 0 chrX 64420326 64420378 -112553762 + (CAT)n Simple_repeat Simple_repeat 2 53 0 435 158 0 0 chrX 64420447 64420523 -112553617 + Ricksha DNA DNA 9 84 -3162 10254 90 5 0 chrX 64420577 64422798 -112551342 - L1PA7 LINE L1 -6 6148 3928 12823 117 7 24 chrX 64422798 64424896 -112549244 + L1PA7 LINE L1 1871 3933 -2213 1456 166 38 3 chrX 64424896 64425185 -112548955 - Ricksha_a DNA DNA -129 1055 757 23328 185 13 21 chrX 64425185 64426161 -112547979 - L1PA10 LINE L1 -3 6480 5499 207 0 0 0 chrX 64426161 64426184 -112547956 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 23328 185 13 21 chrX 64426184 64431234 -112542906 - L1PA10 LINE L1 -984 5499 489 2554 59 0 0 chrX 64431234 64431538 -112542602 - AluY SINE Alu -7 304 1 23328 185 13 21 chrX 64431538 64432015 -112542125 - L1PA10 LINE L1 -5994 489 10 3828 152 57 22 chrX 64432027 64432762 -112541378 - Ricksha_a DNA DNA -419 762 2 268 301 146 53 chrX 64432776 64433022 -112541118 + L2 LINE L2 2255 2523 -791 1329 219 13 24 chrX 64433134 64433508 -112540632 - L1P LINE L1 -787 5359 4990 194 325 24 24 chrX 64433752 64433835 -112540305 - L2 LINE L2 -339 2933 2851 300 98 115 0 chrX 64433916 64433977 -112540163 + L1MCa LINE L1 1996 2063 -4363 286 184 13 13 chrX 64434022 64434098 -112540042 + L1P5 LINE L1 5759 5834 -317 207 0 0 0 chrX 64434098 64434121 -112540019 + (TA)n Simple_repeat Simple_repeat 1 23 0 2802 107 5 19 chrX 64434128 64434560 -112539580 - L1P5 LINE L1 -365 5786 5361 2008 169 0 0 chrX 64434557 64434911 -112539229 + L1 LINE L1 4675 5028 -1118 * 1371 188 3 93 chrX 64435108 64435432 -112538708 + AluJb SINE Alu 1 295 -17 256 224 22 134 chrX 64435804 64435938 -112538202 + MIR SINE MIR 98 216 -46 241 370 44 30 chrX 64435926 64436129 -112538011 + MIR SINE MIR 20 225 -37 * 495 292 24 20 chrX 64436351 64436543 -112537597 - MIR SINE MIR -1 207 19 502 289 64 6 chrX 64437752 64437908 -112536232 - MIR3 SINE MIR -7 201 37 1494 237 6 0 chrX 64438172 64438493 -112535647 - L1PA16 LINE L1 -20 6146 5824 6051 31 1 0 chrX 64438495 64439207 -112534933 - L1PA3 LINE L1 0 6155 5443 7409 57 0 7 chrX 64439207 64440153 -112533987 + L1P1 LINE L1 592 1530 -4616 11913 35 1 0 chrX 64440154 64441627 -112532513 + L1P1 LINE L1 3957 5430 -725 1742 157 10 0 chrX 64441622 64441928 -112532212 - L1PB4 LINE L1 -316 7259 6951 * 7541 194 26 21 chrX 64441934 64442052 -112532088 - L1PB4 LINE L1 -1149 6416 6300 2099 129 7 0 chrX 64442052 64442362 -112531778 - AluSq SINE Alu -1 312 1 7541 194 26 21 chrX 64442362 64445377 -112528763 - L1PB4 LINE L1 -1265 6300 1336 1655 195 28 33 chrX 64445383 64445747 -112528393 + MSTB2 LTR MaLR 96 457 0 321 301 11 0 chrX 64446147 64446240 -112527900 - L3 LINE CR1 -3 1574 1481 471 288 17 0 chrX 64446262 64446380 -112527760 + L2 LINE L2 3194 3313 0 233 323 84 30 chrX 64446382 64446549 -112527591 - L3 LINE CR1 -105 1472 1297 328 270 112 0 chrX 64446668 64446757 -112527383 + L2 LINE L2 3200 3298 -15 1003 204 4 58 chrX 64447321 64447469 -112526671 + MIR SINE MIR 1 134 -128 1626 162 152 13 chrX 64447469 64447845 -112526295 - MSTA LTR MaLR 0 428 1 1003 204 4 58 chrX 64447845 64447921 -112526219 + MIR SINE MIR 134 213 -49 833 165 12 12 chrX 64448038 64448208 -112525932 + L1MA10 LINE L1 6163 6332 -2 2028 107 0 0 chrX 64448840 64449110 -112525030 + AluSq SINE Alu 1 270 -43 191 235 0 15 chrX 64449988 64450056 -112524084 + CT-rich Low_complexity Low_complexity 1 67 0 756 11 0 0 chrX 64450248 64450335 -112523805 - L1PA3 LINE L1 -1932 4214 4128 9547 36 3 0 chrX 64450335 64452262 -112521878 + L1PA3 LINE L1 4226 6155 0 25 0 0 0 chrX 64452262 64452287 -112521853 + AT_rich Low_complexity Low_complexity 1 25 0 955 338 41 97 chrX 64452773 64453700 -112520440 + L2 LINE L2 2391 3271 -1 23 0 0 0 chrX 64454229 64454252 -112519888 + AT_rich Low_complexity Low_complexity 1 23 0 668 287 35 22 chrX 64454252 64454482 -112519658 - MIR SINE MIR 0 262 30 364 316 59 21 chrX 64455682 64455869 -112518271 - MIR SINE MIR -15 247 54 330 364 0 0 chrX 64455900 64456010 -112518130 - MER81 DNA DNA 0 114 5 260 309 7 108 chrX 64456036 64456175 -112517965 + MIR SINE MIR 86 210 -52 242 56 28 0 chrX 64456285 64456321 -112517819 + (CA)n Simple_repeat Simple_repeat 2 38 0 262 337 47 65 chrX 64456574 64456853 -112517287 + L2 LINE L2 2265 2538 -776 305 332 54 63 chrX 64457026 64457231 -112516909 + L2 LINE L2 2856 3058 -214 11105 186 37 6 chrX 64557259 64559274 -112414866 + L1MA2 LINE L1 486 2563 -5002 870 258 20 4 chrX 64559278 64559522 -112414618 + L1MA2 LINE L1 4075 4322 -3243 7030 201 36 8 chrX 64559531 64561203 -112412937 + L1MA2 LINE L1 4525 6243 -1322 1206 142 18 0 chrX 64561213 64561432 -112412708 - L1 LINE L1 -1662 4484 4262 1124 144 37 9 chrX 64561430 64561645 -112412495 + L1MA1 LINE L1 5935 6155 -147 * 5755 204 12 2 chrX 64561642 64562877 -112411263 - L1PB2 LINE L1 -1449 4697 3450 5063 169 37 13 chrX 64562877 64564492 -112409648 + L1PB2 LINE L1 4685 6148 -3 5438 156 14 13 chrX 64564500 64564958 -112409182 + L1MA2 LINE L1 6226 6682 -1041 1804 149 49 30 chrX 64564958 64565326 -112408814 + THE1C LTR MaLR 1 375 0 5438 156 14 13 chrX 64565326 64566173 -112407967 + L1MA2 LINE L1 6682 7544 -179 7632 204 39 37 chrX 64566187 64569052 -112405088 + L1PA10 LINE L1 1 2874 -3587 14873 162 34 13 chrX 64569055 64572566 -112401574 + L1PA10 LINE L1 2920 6479 -4 922 115 98 6 chrX 64572571 64572745 -112401395 + L1MA3 LINE L1 6115 6304 -1 25 75 0 0 chrX 64572971 64573024 -112401116 + AT_rich Low_complexity Low_complexity 1 53 0 23 78 0 0 chrX 64573183 64573234 -112400906 + AT_rich Low_complexity Low_complexity 1 51 0 850 220 25 0 chrX 64573270 64573470 -112400670 + L1MA4 LINE L1 5735 5939 -361 23 0 0 0 chrX 64573746 64573769 -112400371 + AT_rich Low_complexity Low_complexity 1 23 0 503 128 12 0 chrX 64574626 64574712 -112399428 + GA-rich Low_complexity Low_complexity 2 88 0 1495 209 10 23 chrX 64574857 64575159 -112398981 + Charlie1a DNA MER1_type 1 298 -1157 190 333 0 0 chrX 64575340 64575406 -112398734 + MIR SINE MIR 123 188 -74 532 239 39 19 chrX 64575485 64575640 -112398500 - MIR SINE MIR -73 189 32 529 167 0 0 chrX 64575997 64576081 -112398059 - HSMAR2 DNA Mariner -454 848 765 2481 118 0 11 chrX 64576117 64576483 -112397657 - L1PB1 LINE L1 0 6151 5790 366 216 6 31 chrX 64576513 64576675 -112397465 + (TA)n Simple_repeat Simple_repeat 1 158 0 3098 118 0 2 chrX 64576675 64577133 -112397007 - L1PB1 LINE L1 -360 5791 5335 * 31654 44 4 1 chrX 64577129 64581069 -112393071 - L1P LINE L1 -1534 4612 659 540 294 81 42 chrX 64581087 64581396 -112392744 + MLT1I LTR MaLR 80 400 -9 197 269 21 0 chrX 64581779 64581872 -112392268 + GA-rich Low_complexity Low_complexity 5 99 0 233 246 0 0 chrX 64582020 64582077 -112392063 + MLT1K LTR MaLR 511 567 -21 571 314 0 32 chrX 64582325 64582510 -112391630 - L2 LINE L2 -4 3309 3131 1578 229 64 11 chrX 64582828 64583283 -112390857 + L1ME1 LINE L1 5540 6018 -148 198 0 0 0 chrX 64583348 64583370 -112390770 + (TG)n Simple_repeat Simple_repeat 2 23 0 222 211 26 0 chrX 64583953 64583991 -112390149 + L3 LINE CR1 1513 1551 -26 196 286 20 0 chrX 64583957 64584006 -112390134 + MIR3 SINE MIR 144 193 -15 * 1846 360 27 8 chrX 64584430 64585138 -112389002 + L1PA16 LINE L1 1 721 -6066 13710 263 25 9 chrX 64585362 64590046 -112384094 + L1PA16 LINE L1 1324 6100 -717 2169 131 22 27 chrX 64590046 64590412 -112383728 + THE1B LTR MaLR 1 364 0 11068 110 16 2 chrX 64590412 64591970 -112382170 + THE1B-int LTR MaLR 1 1580 0 1352 143 26 49 chrX 64591970 64592235 -112381905 + THE1B LTR MaLR 1 259 -105 3535 142 10 95 chrX 64592266 64593047 -112381093 + L1PA16 LINE L1 6100 6814 -3 2235 23 0 0 chrX 64594472 64594732 -112379408 - L1PA5 LINE L1 -9 6145 5886 395 41 0 0 chrX 64594732 64594781 -112379359 + L1PA5 LINE L1 5847 5895 -259 2094 130 0 3 chrX 64594805 64595106 -112379034 + AluSx SINE Alu 1 300 -12 453 273 15 15 chrX 64595293 64595425 -112378715 - MIR3 SINE MIR -7 201 70 235 216 122 27 chrX 64596076 64596150 -112377990 + MIR3 SINE MIR 113 193 -15 * 675 301 102 44 chrX 64596130 64596472 -112377668 + L2 LINE L2 2952 3313 0 18331 205 21 9 chrX 64599179 64599718 -112374422 - ERVL-C1 LTR ERVL -743 5021 4490 2223 121 21 19 chrX 64599718 64600097 -112374043 + L1PB3 LINE L1 5775 6154 0 18331 205 21 9 chrX 64600097 64603187 -112370953 - ERVL-C1 LTR ERVL -1274 4490 1278 2892 263 99 13 chrX 64603188 64604185 -112369955 - ERVL-C1 LTR ERVL -4666 1098 1 257 167 0 0 chrX 64604187 64604229 -112369911 - MLT2C1 LTR ERVL -2 395 354 5827 92 4 0 chrX 64604250 64605053 -112369087 - L1PA14 LINE L1 -6 6155 5350 193 400 9 0 chrX 64605103 64605208 -112368932 + L2 LINE L2 2554 2659 -655 6150 204 2 5 chrX 64605240 64606494 -112367646 - L1P LINE L1 -845 5301 4051 1046 200 13 53 chrX 64606496 64606651 -112367489 - MLT2C2 LTR ERVL -57 407 262 2422 62 0 7 chrX 64606651 64606956 -112367184 - AluY SINE Alu -7 304 2 1046 200 13 53 chrX 64606956 64607025 -112367115 - MLT2C2 LTR ERVL -202 262 192 * 1360 166 191 16 chrX 64607023 64607343 -112366797 + MSTA LTR MaLR 53 428 0 222 204 0 0 chrX 64607401 64607445 -112366695 + CT-rich Low_complexity Low_complexity 1 44 0 705 339 148 20 chrX 64608005 64608607 -112365533 + L2 LINE L2 1654 2332 -982 235 371 9 0 chrX 64608743 64608848 -112365292 + L2 LINE L2 2554 2659 -655 781 254 91 17 chrX 64608864 64609096 -112365044 + MIR SINE MIR 13 261 -1 180 318 23 23 chrX 64609207 64609295 -112364845 + L2 LINE L2 2935 3022 -250 270 321 179 8 chrX 64609630 64609764 -112364376 + L2 LINE L2 3116 3272 0 263 300 0 67 chrX 64609793 64609883 -112364257 - L2 LINE L2 -2 3270 3187 2179 99 0 10 chrX 64610310 64610604 -112363536 + AluSg SINE Alu 1 291 -19 300 325 154 0 chrX 64611939 64612056 -112362084 - L2 LINE L2 0 3272 3138 643 192 0 0 chrX 64613155 64613285 -112360855 + L1MA10 LINE L1 6202 6331 -3 222 176 0 0 chrX 64614562 64614613 -112359527 + GA-rich Low_complexity Low_complexity 5 55 0 2394 40 33 0 chrX 64616219 64616521 -112357619 + LTR2B LTR ERV1 179 490 0 243 333 13 47 chrX 64616525 64616675 -112357465 - L3 LINE CR1 -1004 573 429 16538 155 37 7 chrX 64616921 64618482 -112355658 - L1PB1 LINE L1 -190 6677 5165 276 30 0 0 chrX 64618482 64618515 -112355625 + (CATTT)n Simple_repeat Simple_repeat 3 35 0 16538 155 37 7 chrX 64618515 64623431 -112350709 - L1PB1 LINE L1 -1702 5165 3 17904 193 27 10 chrX 64623475 64628131 -112346009 - L1 LINE L1 -1544 6021 1240 2213 116 7 3 chrX 64628131 64628433 -112345707 - AluSx SINE Alu -9 303 1 17904 193 27 10 chrX 64628433 64629655 -112344485 - L1 LINE L1 -6325 1240 40 440 331 0 0 chrX 64629664 64629785 -112344355 + L1PA13 LINE L1 1382 1502 -5337 437 242 34 7 chrX 64629782 64629931 -112344209 + L1PA13 LINE L1 2310 2462 -4387 * 336 221 39 13 chrX 64630047 64630124 -112344016 + MIR SINE MIR 27 105 -157 193 247 47 24 chrX 64630225 64630310 -112343830 + MIR SINE MIR 146 232 -30 601 243 116 6 chrX 64630707 64630888 -112343252 + MIR SINE MIR 35 235 -27 998 265 65 3 chrX 64632163 64632499 -112341641 - L1ME2 LINE L1 -16 6148 5792 431 311 163 0 chrX 64632610 64632819 -112341321 + MIR SINE MIR 18 260 -2 1611 181 13 0 chrX 64633895 64634193 -112339947 - L1PB4 LINE L1 0 6156 5855 2096 116 35 0 chrX 64635191 64635475 -112338665 - AluSc SINE Alu -15 294 1 1775 208 68 11 chrX 64636319 64636761 -112337379 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chrX 64637262 64637283 -112336857 + AT_rich Low_complexity Low_complexity 1 21 0 21672 36 1 1 chrX 64638576 64642013 -112332127 + L1PA4 LINE L1 2718 6153 -2 3692 133 41 12 chrX 64642013 64642647 -112331493 - L1MA5A LINE L1 -19 6278 5620 415 106 202 21 chrX 64642650 64642744 -112331396 - L1PA13 LINE L1 -1 6162 6052 4290 133 50 48 chrX 64643096 64643880 -112330260 + LTR1 LTR ERV1 1 785 0 312 290 16 77 chrX 64644034 64644217 -112329923 - MIR SINE MIR 0 262 91 2432 114 17 14 chrX 64645719 64646078 -112328062 + THE1B LTR MaLR 1 360 -4 10611 118 27 2 chrX 64646085 64647623 -112326517 + THE1B-int LTR MaLR 4 1580 0 276 54 0 0 chrX 64647623 64647660 -112326480 + THE1B LTR MaLR 1 37 -391 824 344 89 12 chrX 64647910 64648428 -112325712 - L2 LINE L2 -822 2492 1935 364 230 101 61 chrX 64648438 64648586 -112325554 + L1ME4a LINE L1 5734 5887 -234 241 215 0 31 chrX 64648614 64648679 -112325461 - MIR SINE MIR 0 262 200 1911 151 3 10 chrX 64648716 64649021 -112325119 - AluSx SINE Alu -9 303 1 330 87 0 0 chrX 64649112 64649158 -112324982 + (TA)n Simple_repeat Simple_repeat 1 46 0 3277 156 15 26 chrX 64649158 64649464 -112324676 - L1MB4 LINE L1 -28 6152 5844 2257 129 0 0 chrX 64649464 64649774 -112324366 + AluSx SINE Alu 1 310 -2 3277 156 15 26 chrX 64649774 64650116 -112324024 - L1MB4 LINE L1 -336 5844 5511 26 30 0 0 chrX 64650125 64650158 -112323982 + AT_rich Low_complexity Low_complexity 1 33 0 2409 155 54 2 chrX 64650319 64650745 -112323395 + MER83 LTR ERV1 1 448 0 7577 82 13 8 chrX 64650779 64652145 -112321995 + L1P3 LINE L1 4228 5599 -555 3264 248 18 16 chrX 64702145 64702915 -112271225 - L1P3 LINE L1 -5101 774 3 698 221 22 46 chrX 64702911 64703284 -112270856 - L1MCa LINE L1 -3893 2714 2306 * 3170 77 8 37 chrX 64703303 64703812 -112270328 - SVA Other Other -339 1047 554 5453 90 32 31 chrX 64703916 64704989 -112269151 - SVA Other Other -520 866 1 409 323 68 0 chrX 64704990 64705123 -112269017 + L3 LINE CR1 1433 1574 -3 21 36 0 0 chrX 64707142 64707170 -112266970 + AT_rich Low_complexity Low_complexity 1 28 0 192 161 36 36 chrX 64707509 64707565 -112266575 + (TAAA)n Simple_repeat Simple_repeat 4 59 0 311 227 41 23 chrX 64707566 64707738 -112266402 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1917 254 32 72 chrX 64707927 64708652 -112265488 + HUERS-P1 LTR ERV1 5568 6263 0 916 213 54 99 chrX 64708669 64708983 -112265157 + LTR8A LTR ERV1 34 333 -394 534 174 0 10 chrX 64708983 64709081 -112265059 + MER4A LTR ERV1 2 98 -566 1857 136 3 30 chrX 64709081 64709434 -112264706 + MER4A LTR ERV1 263 664 0 1150 218 106 22 chrX 64709434 64709753 -112264387 + LTR8A LTR ERV1 329 674 -53 53 40 0 0 chrX 64709835 64709909 -112264231 + AT_rich Low_complexity Low_complexity 1 74 0 408 271 55 50 chrX 64710142 64710323 -112263817 + MIR SINE MIR 16 197 -65 1099 170 0 11 chrX 64711482 64711664 -112262476 - AluJb SINE Alu -21 291 112 5477 232 70 41 chrX 64711974 64715619 -112258521 + L1MB7 LINE L1 16 3827 -2817 29540 38 0 0 chrX 64715621 64720051 -112254089 + L1PA4 LINE L1 1726 6155 0 6929 224 47 10 chrX 64720049 64722239 -112251901 + L1MB7 LINE L1 3823 6101 -581 * 1742 116 55 7 chrX 64722239 64722529 -112251611 + L1MB7 LINE L1 6372 6677 -5 774 197 7 14 chrX 64722539 64722686 -112251454 + LTR8 LTR ERV1 546 691 0 837 275 88 3 chrX 64722686 64722975 -112251165 + HUERS-P1 LTR ERV1 1 387 -5876 2257 219 31 59 chrX 64723074 64723680 -112250460 + HUERS-P1 LTR ERV1 609 1197 -5066 5345 0 0 0 chrX 64723680 64724268 -112249872 + L1HS LINE L1 5534 6121 -34 8225 196 108 99 chrX 64724274 64725475 -112248665 + LTR49-int LTR ERV1 1052 2242 -3704 4371 111 4 30 chrX 64725475 64726153 -112247987 - MER4A LTR ERV1 0 664 4 8225 196 108 99 chrX 64726153 64728122 -112246018 + LTR49-int LTR ERV1 2242 4248 -1698 1027 168 10 14 chrX 64728223 64728431 -112245709 + LTR49-int LTR ERV1 5584 5790 -541 780 183 121 58 chrX 64728454 64728711 -112245429 + LTR49-int LTR ERV1 5916 6188 -143 399 178 44 0 chrX 64728719 64728809 -112245331 - MER53 DNA DNA -95 94 1 611 244 67 44 chrX 64728899 64729076 -112245064 - MIR SINE MIR -46 216 36 486 247 149 0 chrX 64729076 64729230 -112244910 - MER5A DNA MER1_type 0 189 13 355 293 45 54 chrX 64729555 64729797 -112244343 + L2 LINE L2 2702 2941 -373 233 259 0 19 chrX 64730295 64730349 -112243791 - L2 LINE L2 -3 3269 3217 558 175 5 175 chrX 64731010 64731151 -112242989 + MLT2C1 LTR ERVL 220 315 -82 1763 129 201 28 chrX 64731151 64731514 -112242626 + MSTA LTR MaLR 3 428 0 558 175 5 175 chrX 64731514 64731583 -112242557 + MLT2C1 LTR ERVL 315 394 -3 371 297 192 72 chrX 64731627 64732044 -112242096 + L2 LINE L2 2804 3270 -2 833 230 27 0 chrX 64732188 64732375 -112241765 + MER3 DNA MER1_type 1 192 -17 258 32 0 0 chrX 64732458 64732489 -112241651 + (CA)n Simple_repeat Simple_repeat 1 31 0 561 324 23 6 chrX 64733372 64733545 -112240595 - MIR3 SINE MIR -17 191 16 471 291 40 40 chrX 64734395 64734570 -112239570 - L3 LINE CR1 -1 1576 1402 1041 83 0 0 chrX 64734579 64734711 -112239429 - AluY SINE Alu -179 132 1 1037 295 27 112 chrX 64734711 64735300 -112238840 - L3 LINE CR1 -164 1413 875 2376 158 13 17 chrX 64735300 64736234 -112237906 + L1PB4 LINE L1 4855 5791 -365 270 0 0 0 chrX 64736234 64736264 -112237876 + (CA)n Simple_repeat Simple_repeat 2 31 0 2376 158 13 17 chrX 64736264 64736284 -112237856 + L1PB4 LINE L1 5791 5810 -346 1418 185 62 0 chrX 64736284 64736559 -112237581 + L1PB4 LINE L1 5861 6153 -3 2376 158 13 17 chrX 64736559 64736584 -112237556 + L1PB4 LINE L1 5810 6153 -3 406 359 63 10 chrX 64736679 64736885 -112237255 - L3 LINE CR1 -725 852 636 228 167 0 0 chrX 64736886 64736922 -112237218 - U6 snRNA snRNA -71 36 1 5016 171 20 7 chrX 64737034 64737982 -112236158 - L1MA6 LINE L1 -23 6277 5318 5488 177 21 7 chrX 64737986 64739337 -112234803 - L1MA4 LINE L1 -5 6477 5105 * 9283 206 61 12 chrX 64739333 64741611 -112232529 - L1MA4 LINE L1 -1477 4851 2685 2330 75 7 0 chrX 64741611 64741916 -112232224 - AluY SINE Alu -4 307 1 9283 206 61 12 chrX 64741916 64744076 -112230064 - L1MA4 LINE L1 -3643 2685 180 5425 47 0 0 chrX 64744091 64744754 -112229386 + L1PA7 LINE L1 5486 6148 -6 8638 218 47 23 chrX 64744788 64747956 -112226184 - L1MB2 LINE L1 -11 7181 3936 287 231 93 28 chrX 64748226 64748334 -112225806 - L1MB2 LINE L1 -7052 116 2 1581 189 3 18 chrX 64749090 64749375 -112224765 + AluJb SINE Alu 3 283 -29 495 33 0 0 chrX 64749505 64749566 -112224574 + (GA)n Simple_repeat Simple_repeat 2 62 0 33632 36 1 0 chrX 64749862 64754781 -112219359 - L1PA2 LINE L1 0 6155 1230 265 250 23 57 chrX 64755879 64755967 -112218173 + MIR SINE MIR 88 172 -90 21 36 0 0 chrX 64755979 64756007 -112218133 + AT_rich Low_complexity Low_complexity 1 28 0 498 285 62 33 chrX 64756295 64756537 -112217603 + L1MC4a LINE L1 5716 5964 -1844 24 0 0 0 chrX 64756717 64756741 -112217399 + AT_rich Low_complexity Low_complexity 1 24 0 22074 183 29 26 chrX 64756741 64760493 -112213647 - L1PA11 LINE L1 -199 6290 2549 7871 11 1 0 chrX 64760493 64761587 -112212553 + L1PA2 LINE L1 5058 6152 -3 22074 183 29 26 chrX 64761587 64761905 -112212235 - L1PA11 LINE L1 -3940 2549 2233 2183 115 0 0 chrX 64761905 64762200 -112211940 - AluSx SINE Alu -17 295 1 2261 110 0 0 chrX 64762201 64762500 -112211640 - AluSx SINE Alu -13 299 1 22074 183 29 26 chrX 64762500 64764694 -112209446 - L1PA11 LINE L1 -4255 2234 10 11455 188 26 52 chrX 64764781 64768305 -112205835 - L1PA15 LINE L1 -3 6162 2762 2041 133 3 3 chrX 64768305 64768605 -112205535 - AluSg SINE Alu -10 300 1 11455 188 26 52 chrX 64768605 64769176 -112204964 - L1PA15 LINE L1 -3403 2762 2178 1075 202 64 55 chrX 64769234 64769670 -112204470 - L1 LINE L1 -1391 4755 4316 10813 176 27 9 chrX 64769695 64772959 -112201181 - L1MA2 LINE L1 -22 7701 4374 1959 143 41 3 chrX 64772978 64773321 -112200819 - L1MA1 LINE L1 0 6302 5947 3378 119 21 3 chrX 64773327 64773949 -112200191 - L1MA1 LINE L1 -532 5770 5137 1756 176 6 56 chrX 64773941 64774465 -112199675 - L1M1 LINE L1 -743 5403 4945 * 1728 154 15 39 chrX 64774464 64774720 -112199420 - L1MA1 LINE L1 -1096 5050 4789 * 1881 171 122 10 chrX 64774720 64775105 -112199035 + MSTA LTR MaLR 1 428 0 9468 134 15 39 chrX 64775107 64776719 -112197421 + MSTA-int LTR MaLR 3 1576 -4 2082 153 119 10 chrX 64776723 64777109 -112197031 + MSTA LTR MaLR 1 428 0 1728 154 15 39 chrX 64777109 64777181 -112196959 - L1MA1 LINE L1 -1361 4785 4722 * 18768 186 30 14 chrX 64777179 64781398 -112192742 - L1MA2 LINE L1 -3175 4390 95 243 0 0 0 chrX 64781398 64781425 -112192715 + (TG)n Simple_repeat Simple_repeat 2 28 0 18768 186 30 14 chrX 64781425 64781505 -112192635 - L1MA2 LINE L1 -7470 95 18 4319 198 11 9 chrX 64781694 64782622 -112191518 - L1PB1 LINE L1 -2024 4122 3193 * 5891 154 14 10 chrX 64782618 64784659 -112189481 + L1PB1 LINE L1 4133 6174 0 249 158 53 18 chrX 64784745 64784802 -112189338 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 386 336 55 42 chrX 64784805 64785043 -112189097 + L2 LINE L2 2939 3179 -93 2361 65 31 0 chrX 64786429 64786721 -112187419 + AluY SINE Alu 1 301 -10 2431 46 0 33 chrX 64786726 64787032 -112187108 + AluY SINE Alu 3 298 -13 329 250 80 0 chrX 64787740 64787840 -112186300 + L1ME LINE L1 5694 5801 -320 505 308 35 4 chrX 64787867 64788094 -112186046 + L1MC4a LINE L1 5701 5934 -1874 24 67 0 0 chrX 64788100 64788145 -112185995 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chrX 64788297 64788335 -112185805 + AT_rich Low_complexity Low_complexity 1 38 0 703 205 11 13 chrX 64788585 64788759 -112185381 + LTR47A LTR ERVL 261 446 -6 1455 155 11 76 chrX 64788857 64789134 -112185006 - L1M1 LINE L1 -5486 2079 1821 274 330 61 53 chrX 64789265 64789529 -112184611 - HERVL18 LTR ERVL -4191 1856 1591 2140 139 13 5 chrX 64789681 64790061 -112184079 + L1M1 LINE L1 2069 2451 -5114 1149 231 81 29 chrX 64790059 64790478 -112183662 + L1ME1 LINE L1 5722 6162 -4 * 23 86 0 0 chrX 64790478 64790536 -112183604 + AT_rich Low_complexity Low_complexity 1 58 0 345 125 0 0 chrX 64790967 64791023 -112183117 + (CA)n Simple_repeat Simple_repeat 2 57 0 16729 117 7 3 chrX 64791474 64794056 -112180084 + L1M1 LINE L1 2714 5304 -2261 9959 99 16 1 chrX 64794059 64796260 -112177880 + L1PA7 LINE L1 3942 6150 -4 325 341 67 56 chrX 64796815 64796994 -112177146 + MIR3 SINE MIR 19 199 -9 754 196 108 7 chrX 64797773 64797921 -112176219 - Tigger3(Golem) DNA MER2_type 0 3029 2867 740 88 0 0 chrX 64797922 64798024 -112176116 + L1PB1 LINE L1 6047 6148 -3 839 274 31 9 chrX 64798572 64798795 -112175345 + MIR SINE MIR 30 257 -5 31 58 0 0 chrX 64799169 64799221 -112174919 + AT_rich Low_complexity Low_complexity 1 52 0 987 138 53 21 chrX 64799527 64799715 -112174425 + L1PA16 LINE L1 5973 6166 0 411 331 83 0 chrX 64799907 64800064 -112174076 - L2 LINE L2 -1 3271 3102 196 193 53 53 chrX 64800851 64800908 -112173232 - L2 LINE L2 -1 3312 3256 5661 124 11 11 chrX 64800936 64802574 -112171566 - L1PA14 LINE L1 0 6161 4529 5694 135 62 13 chrX 64802624 64804105 -112170035 - L1PA11 LINE L1 0 6174 4606 * 8252 199 38 16 chrX 64804102 64805911 -112168229 - L1PA14 LINE L1 -1794 4352 2504 * 9511 160 23 21 chrX 64805909 64807431 -112166709 + L1 LINE L1 765 2281 -5284 1737 167 0 23 chrX 64807431 64807731 -112166409 + AluJb SINE Alu 1 293 -19 9511 160 23 21 chrX 64807731 64807961 -112166179 + L1 LINE L1 2281 2509 -5056 2076 118 24 0 chrX 64807961 64808258 -112165882 + AluSp SINE Alu 3 306 -7 9511 160 23 21 chrX 64808258 64809014 -112165126 + L1 LINE L1 2509 3301 -4264 2345 198 40 4 chrX 64809015 64809378 -112164762 + L1 LINE L1 4787 5176 -2389 243 0 0 0 chrX 64809378 64809405 -112164735 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2345 198 40 4 chrX 64809405 64809571 -112164569 + L1 LINE L1 5176 5335 -2230 * 5611 115 58 4 chrX 64809568 64810483 -112163657 + L1MA2 LINE L1 5341 6304 0 298 326 64 32 chrX 64810556 64810774 -112163366 - L2 LINE L2 0 3313 3089 4067 239 109 38 chrX 64810973 64812365 -112161775 + L1M4 LINE L1 78 1369 -5277 1808 82 0 9 chrX 64812365 64812596 -112161544 + AluY SINE Alu 69 297 -14 4067 239 109 38 chrX 64812596 64813684 -112160456 + L1M4 LINE L1 1369 2760 -3886 267 49 0 0 chrX 64813673 64813714 -112160426 + L1MA1 LINE L1 6261 6301 -1 * 32 43 0 0 chrX 64813714 64813760 -112160380 + AT_rich Low_complexity Low_complexity 1 46 0 229 216 0 40 chrX 64813765 64813839 -112160301 + L1M4 LINE L1 2752 2822 -3822 * 1331 212 10 7 chrX 64813831 64814138 -112160002 + L1 LINE L1 6233 6540 -1025 3455 106 43 10 chrX 64814139 64814647 -112159493 + LTR17 LTR ERV1 256 780 0 5328 76 0 17 chrX 64814647 64815343 -112158797 + HERV17 LTR ERV1 1 684 -7942 9029 80 19 3 chrX 64815510 64816708 -112157432 + HERV17 LTR ERV1 798 2014 -6612 * 11141 55 4 0 chrX 64816693 64818051 -112156089 + HERV17 LTR ERV1 2430 3792 -4834 25302 98 11 1 chrX 64818056 64821850 -112152290 - L1P3 LINE L1 -677 5477 1650 3339 241 31 34 chrX 64821851 64822633 -112151507 + L1M4 LINE L1 4696 5476 -1168 2234 109 0 0 chrX 64822633 64822918 -112151222 - AluSc SINE Alu -24 285 1 3339 241 31 34 chrX 64822918 64823270 -112150870 + L1M4 LINE L1 5476 5827 -817 1719 218 0 14 chrX 64823279 64823692 -112150448 + L1M4 LINE L1 3789 4195 -2449 17767 196 13 15 chrX 64823700 64828898 -112145242 + L1PA15 LINE L1 1677 6860 -8 782 164 23 18 chrX 64828917 64829088 -112145052 + L1M4 LINE L1 4731 4902 -1742 565 263 123 35 chrX 64830386 64830614 -112143526 - MIR SINE MIR -11 251 4 368 248 62 73 chrX 64830970 64831169 -112142971 - MIR SINE MIR -42 220 26 309 157 20 0 chrX 64831756 64831807 -112142333 + MIR3 SINE MIR 109 160 -48 322 233 27 14 chrX 64831859 64831932 -112142208 + MIR3 SINE MIR 123 196 -12 1584 148 4 4 chrX 64832248 64832512 -112141628 - L1PA15 LINE L1 0 6165 5902 542 201 29 92 chrX 64833228 64833402 -112140738 + MER3 DNA MER1_type 35 197 -12 2235 173 12 2 chrX 64833728 64834127 -112140013 - MER57A LTR ERV1 0 403 1 243 188 62 0 chrX 64834285 64834333 -112139807 + MIR3 SINE MIR 110 160 -48 189 259 294 0 chrX 64834331 64834416 -112139724 - L2 LINE L2 0 3272 3163 * 1637 189 52 84 chrX 64835033 64835625 -112138515 - LTR5 LTR ERVK 0 969 397 534 146 48 10 chrX 64835626 64835729 -112138411 - LTR5 LTR ERVK -862 107 1 317 260 55 96 chrX 64837783 64837929 -112136211 - MIR SINE MIR -54 208 69 22 35 0 0 chrX 64838286 64838315 -112135825 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chrX 64839738 64839761 -112134379 + (TG)n Simple_repeat Simple_repeat 2 24 0 2266 85 0 0 chrX 64839991 64840296 -112133844 + AluSc SINE Alu 1 305 0 182 294 231 31 chrX 64842344 64842504 -112131636 - L2 LINE L2 -4 3268 3077 2218 104 3 0 chrX 64842951 64843240 -112130900 - AluSp SINE Alu -15 298 9 324 0 0 0 chrX 64843482 64843518 -112130622 + (CA)n Simple_repeat Simple_repeat 2 37 0 8596 36 7 0 chrX 64843726 64845541 -112128599 + L1PA4 LINE L1 4336 6155 0 188 343 14 14 chrX 64845595 64845665 -112128475 - L2 LINE L2 -220 3052 2983 369 342 88 31 chrX 64845803 64846063 -112128077 - L2 LINE L2 -791 2523 2249 4131 85 19 0 chrX 64846106 64846669 -112127471 - L1PA12 LINE L1 -2 6166 5593 6020 148 10 2 chrX 64846673 64848021 -112126119 - L1PB2 LINE L1 -3 6148 4790 2441 232 0 4 chrX 64848011 64848506 -112125634 - L1PBa LINE L1 -6031 832 340 * 9282 215 30 5 chrX 64848499 64850306 -112123834 - L1M1 LINE L1 -5705 1860 9 256 348 194 22 chrX 64850425 64851095 -112123045 + L2 LINE L2 189 973 -2341 5261 185 24 5 chrX 64851170 64853180 -112120960 - L1PA16 LINE L1 -1 6165 4126 487 317 89 46 chrX 64853189 64853536 -112120604 + L2 LINE L2 1062 1423 -1891 288 143 0 0 chrX 64853740 64853796 -112120344 + (CA)n Simple_repeat Simple_repeat 1 56 0 236 375 146 31 chrX 64853800 64854157 -112119983 + L2 LINE L2 2846 3243 -29 206 360 54 27 chrX 64854471 64854582 -112119558 - L2 LINE L2 -545 2769 2656 384 260 187 0 chrX 64854800 64854923 -112119217 + MIR3 SINE MIR 52 197 -11 182 255 0 0 chrX 64855809 64855856 -112118284 - MIR SINE MIR -10 252 206 195 129 0 0 chrX 64856341 64856372 -112117768 + (CAATT)n Simple_repeat Simple_repeat 5 35 0 1865 207 132 70 chrX 64856959 64857573 -112116567 + MLT1E1 LTR MaLR 3 654 0 330 376 56 8 chrX 64857683 64857917 -112116223 + L2 LINE L2 1864 2108 -1206 * 580 213 47 33 chrX 64857896 64858046 -112116094 - MIR SINE MIR -110 152 1 2094 138 0 0 chrX 64858191 64858488 -112115652 + AluSx SINE Alu 1 297 -15 1798 85 19 26 chrX 64858488 64858758 -112115382 - L1MA1 LINE L1 -331 5971 5704 1563 174 55 6 chrX 64858757 64859068 -112115072 + L1MB1 LINE L1 5741 6066 -102 * 4933 77 20 1 chrX 64859618 64860266 -112113874 - PABL_A LTR ERV1 0 660 1 481 321 41 39 chrX 64860727 64860931 -112113209 - MIR3 SINE MIR 0 208 1 6937 209 13 14 chrX 64861140 64862508 -112111632 + L1MA2 LINE L1 17 1383 -6182 2416 115 28 14 chrX 64862509 64862866 -112111274 + THE1B LTR MaLR 1 362 -2 7131 97 4 0 chrX 64862869 64863824 -112110316 + THE1B-int LTR MaLR 1 959 -621 1406 131 0 0 chrX 64863824 64864023 -112110117 - THE1B LTR MaLR -165 199 1 15157 168 16 8 chrX 64864023 64869533 -112104607 + L1MA2 LINE L1 1769 7328 -395 38101 86 5 6 chrX 64869541 64875690 -112098450 + L1PA6 LINE L1 11 6154 0 2612 107 25 2 chrX 64875690 64876086 -112098054 + L1MA2 LINE L1 7313 7723 0 883 172 6 44 chrX 64876439 64876619 -112097521 - AluJ SINE Alu -20 292 120 1271 227 11 55 chrX 64876697 64877063 -112097077 - L1ME1 LINE L1 -7 6159 5810 1287 218 51 6 chrX 64877074 64877405 -112096735 - L1MB8 LINE L1 -9 6169 5824 * 1689 224 78 22 chrX 64877403 64877911 -112096229 + L1ME LINE L1 5061 5621 -545 1983 45 28 0 chrX 64877911 64878158 -112095982 + L1PA3 LINE L1 5902 6155 0 1689 224 78 22 chrX 64878158 64878361 -112095779 + L1ME LINE L1 5621 5811 -355 579 178 28 0 chrX 64878362 64878469 -112095671 - AluJ SINE Alu -179 133 24 196 77 0 0 chrX 64878853 64878879 -112095261 - L2 LINE L2 -22 3291 3266 2392 34 41 7 chrX 64879212 64879505 -112094635 - AluY SINE Alu -8 303 1 249 167 0 0 chrX 64879843 64879897 -112094243 + T-rich Low_complexity Low_complexity 1 54 0 2031 110 10 33 chrX 64879955 64880256 -112093884 + AluSx SINE Alu 1 294 -18 187 273 0 0 chrX 64881406 64881450 -112092690 + L2 LINE L2 3143 3186 -86 217 174 87 0 chrX 64881571 64881617 -112092523 + MIR3 SINE MIR 132 181 -27 796 194 0 0 chrX 64881908 64882037 -112092103 - FLAM_A SINE Alu -4 129 1 207 197 45 91 chrX 64882243 64882309 -112091831 - L2 LINE L2 -8 3264 3202 185 314 64 36 chrX 64882428 64882568 -112091572 - L2 LINE L2 -221 3051 2908 986 149 17 142 chrX 64882901 64883013 -112091127 + L1MA9 LINE L1 6047 6171 -141 4710 104 0 60 chrX 64883013 64883084 -112091056 + L1PA13 LINE L1 5426 5500 -663 2128 102 7 26 chrX 64883084 64883387 -112090753 + AluSx SINE Alu 1 297 -15 4710 104 0 60 chrX 64883387 64884100 -112090040 + L1PA13 LINE L1 5500 6163 0 986 149 17 142 chrX 64884100 64884289 -112089851 + L1MA9 LINE L1 6171 6310 -2 5382 165 22 7 chrX 64884559 64886298 -112087842 - L1PA16 LINE L1 -26 6791 5031 3947 262 19 21 chrX 64886310 64887951 -112086189 - L1PA16 LINE L1 -4588 2199 1 7453 35 1 19 chrX 64888913 64890424 -112083716 - L1PA4 LINE L1 0 6155 4659 24 32 0 0 chrX 64891993 64892024 -112082116 + AT_rich Low_complexity Low_complexity 1 31 0 605 286 37 46 chrX 64893480 64893697 -112080443 + MIR SINE MIR 2 216 -46 727 282 53 8 chrX 64894125 64894370 -112079770 - MIR SINE MIR -2 260 5 762 193 0 0 chrX 64894392 64894537 -112079603 + L1MB1 LINE L1 6023 6167 -1 2139 118 0 3 chrX 64894737 64895024 -112079116 + AluSg SINE Alu 1 286 -24 517 80 93 3 chrX 64895024 64895349 -112078791 + (TA)n Simple_repeat Simple_repeat 1 354 0 510 47 82 24 chrX 64895363 64895533 -112078607 + (TA)n Simple_repeat Simple_repeat 1 180 0 39 22 0 0 chrX 64895533 64895579 -112078561 + AT_rich Low_complexity Low_complexity 1 46 0 600 69 84 6 chrX 64895586 64895929 -112078211 + (TA)n Simple_repeat Simple_repeat 1 369 0 672 55 82 18 chrX 64895946 64896275 -112077865 + (TA)n Simple_repeat Simple_repeat 1 350 0 1389 127 93 8 chrX 64996369 64996606 -111977534 + MSTA LTR MaLR 172 428 0 1472 158 26 40 chrX 64996607 64996879 -111977261 - AluJo SINE Alu 0 312 45 477 153 71 0 chrX 64996879 64996977 -111977163 + MLT1D LTR MaLR 401 505 0 227 298 0 48 chrX 64996981 64997065 -111977075 - MIR SINE MIR -173 89 10 1128 110 87 0 chrX 64997367 64997645 -111976495 - L1MA6 LINE L1 -743 5403 5184 * 4636 134 26 14 chrX 64997610 64998447 -111975693 + L1MA6 LINE L1 5431 6277 -23 278 118 39 0 chrX 65000636 65000687 -111973453 + (TATG)n Simple_repeat Simple_repeat 4 56 0 23 0 0 0 chrX 65001178 65001201 -111972939 + AT_rich Low_complexity Low_complexity 1 23 0 193 250 0 42 chrX 65001551 65001599 -111972541 - L2 LINE L2 -12 3260 3215 21 36 0 0 chrX 65002005 65002033 -111972107 + AT_rich Low_complexity Low_complexity 1 28 0 2007 124 0 7 chrX 65002074 65002390 -111971750 + AluSx SINE Alu 1 314 0 2322 111 0 0 chrX 65003947 65004244 -111969896 - AluSx SINE Alu -15 297 1 742 304 31 11 chrX 65004579 65004915 -111969225 - L1ME LINE L1 -394 5768 5420 314 198 77 22 chrX 65005555 65005646 -111968494 + L1MC4 LINE L1 7907 8002 -40 867 130 237 6 chrX 65005656 65005833 -111968307 - MSTA LTR MaLR -210 218 1 8997 144 9 39 chrX 65005833 65007064 -111967076 - MSTA-int LTR MaLR 0 1580 410 2169 116 55 19 chrX 65007064 65007426 -111966714 + THE1C LTR MaLR 1 375 0 8997 144 9 39 chrX 65007426 65007822 -111966318 - MSTA-int LTR MaLR -1170 410 3 1980 155 134 8 chrX 65007825 65008205 -111965935 - MSTA LTR MaLR 0 428 1 4413 125 22 15 chrX 65008205 65008941 -111965199 + Tigger1 DNA MER2_type 642 1382 -1036 1712 251 14 14 chrX 65008993 65009431 -111964709 - L1ME1 LINE L1 -83 6083 5646 729 153 117 15 chrX 65009433 65009570 -111964570 + MER20 DNA MER1_type 3 153 -66 1314 91 29 179 chrX 65009574 65009881 -111964259 - THE1C LTR MaLR 0 375 115 1827 127 5 72 chrX 65009881 65010251 -111963889 - MER4A LTR ERV1 0 664 261 2170 4 0 0 chrX 65010298 65010537 -111963603 - L1HS LINE L1 0 6155 5917 * 5863 12 0 0 chrX 65010536 65011234 -111962906 + L1HS LINE L1 5211 5908 -247 312 187 120 0 chrX 65011234 65011309 -111962831 - MER4A LTR ERV1 -580 84 1 * 607 138 15 77 chrX 65011309 65011435 -111962705 - THE1C LTR MaLR -257 118 1 360 191 0 0 chrX 65011439 65011502 -111962638 + MER20 DNA MER1_type 157 219 0 800 174 196 27 chrX 65011502 65011686 -111962454 - L1ME1 LINE L1 -519 5647 5436 531 228 49 0 chrX 65011694 65011817 -111962323 - MLT1L LTR MaLR -326 289 161 621 247 67 36 chrX 65012896 65013090 -111961050 + MIR SINE MIR 62 261 -1 2182 111 7 3 chrX 65013361 65013698 -111960442 + AluSq SINE Alu 1 313 0 2107 112 13 7 chrX 65013702 65014006 -111960134 + AluSx SINE Alu 1 306 -6 3244 86 40 7 chrX 65014940 65015370 -111958770 - MLT2A1 LTR ERVL 0 444 1 615 211 55 0 chrX 65016091 65016219 -111957921 - LTR1B LTR ERV1 -333 493 359 481 222 63 141 chrX 65016235 65016505 -111957635 + LTR1B LTR ERV1 571 819 -7 180 125 75 0 chrX 65016517 65016557 -111957583 + MIR SINE MIR 101 143 -65 2253 103 0 3 chrX 65016831 65017123 -111957017 - AluSx SINE Alu -21 291 1 1512 138 15 147 chrX 65017831 65018204 -111955936 + AluY SINE Alu 1 330 0 848 253 5 11 chrX 65018237 65018427 -111955713 + MER5A DNA MER1_type 1 189 0 234 228 188 59 chrX 65018449 65018550 -111955590 - MER5B DNA MER1_type -62 116 3 2197 106 0 0 chrX 65018793 65019114 -111955026 + AluSg SINE Alu 1 321 0 2145 116 0 0 chrX 65019123 65019407 -111954733 + AluSx SINE Alu 1 284 -28 40 0 0 0 chrX 65019407 65019447 -111954693 + AT_rich Low_complexity Low_complexity 1 40 0 189 0 0 0 chrX 65019827 65019848 -111954292 + (TG)n Simple_repeat Simple_repeat 2 22 0 360 240 144 34 chrX 65020143 65020289 -111953851 - MIR SINE MIR -56 206 45 2077 148 0 0 chrX 65020312 65020622 -111953518 - AluSx SINE Alu -2 310 1 2161 132 7 0 chrX 65020627 65020937 -111953203 - AluSx SINE Alu 0 312 1 1524 203 119 12 chrX 65021177 65021581 -111952559 - LTR2 LTR ERV1 0 449 3 1232 234 4 0 chrX 65021905 65022144 -111951996 - MIR SINE MIR -21 241 2 611 265 112 5 chrX 65022169 65022365 -111951775 - L3 LINE CR1 -2 1575 1359 3131 127 17 10 chrX 65022550 65023031 -111951109 - Tigger3b DNA MER2_type 0 1232 749 1295 178 63 37 chrX 65023033 65023050 -111951090 + AluJo SINE Alu 1 16 -296 5404 78 9 0 chrX 65023050 65023704 -111950436 - PABL_A LTR ERV1 0 660 1 1295 178 63 37 chrX 65023704 65023956 -111950184 + AluJo SINE Alu 16 277 -35 4607 120 15 47 chrX 65023975 65024111 -111950029 - Tigger3b DNA MER2_type -2271 757 618 2266 119 0 6 chrX 65024111 65024422 -111949718 - AluSg SINE Alu 0 310 2 4607 120 15 47 chrX 65024422 65024521 -111949619 - Tigger3b DNA MER2_type -2410 618 517 2957 9 0 0 chrX 65024521 65024839 -111949301 + AluYb8 SINE Alu 1 318 0 4607 120 15 47 chrX 65024839 65024851 -111949289 - Tigger3b DNA MER2_type -2511 517 506 1884 97 8 12 chrX 65024851 65025108 -111949032 + AluSx SINE Alu 44 299 -13 4607 120 15 47 chrX 65025108 65025510 -111948630 - Tigger3b DNA MER2_type -2522 506 133 5107 88 184 0 chrX 65025510 65026206 -111947934 - LTR12 LTR ERV1 -2 824 1 4607 120 15 47 chrX 65026206 65026335 -111947805 - Tigger3b DNA MER2_type -2895 133 1 392 214 0 0 chrX 65026660 65026730 -111947410 + ORSL DNA AcHobo 1 70 -205 2041 142 10 0 chrX 65026736 65027031 -111947109 + AluSx SINE Alu 1 298 -14 2318 98 13 0 chrX 65027031 65027338 -111946802 + AluSx SINE Alu 1 311 -1 312 291 188 63 chrX 65027406 65027629 -111946511 - L3 LINE CR1 -387 1190 940 263 333 20 10 chrX 65027851 65027953 -111946187 + L2 LINE L2 3169 3271 -1 1873 163 136 57 chrX 65028024 65028502 -111945638 - LTR10A LTR ERV1 -61 548 33 35499 50 3 1 chrX 65028506 65033658 -111940482 - L1PA5 LINE L1 -13 6141 978 440 107 0 174 chrX 65033660 65033714 -111940426 + LTR38B LTR ERV1 511 573 -37 410 0 0 20 chrX 65033714 65033765 -111940375 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2036 114 0 24 chrX 65033769 65034058 -111940082 - AluSx SINE Alu -30 282 1 440 107 0 174 chrX 65034058 65034119 -111940021 + LTR38B LTR ERV1 576 610 0 1124 178 5 27 chrX 65034119 65034338 -111939802 - L1MB3 LINE L1 -119 6064 5851 767 288 89 32 chrX 65034583 65034949 -111939191 + L1ME4a LINE L1 5604 6004 -117 2292 90 10 3 chrX 65034949 65035249 -111938891 - AluSg SINE Alu -8 302 1 767 288 89 32 chrX 65035249 65035355 -111938785 + L1ME4a LINE L1 6004 6103 -18 277 220 57 0 chrX 65035367 65035508 -111938632 + (TA)n Simple_repeat Simple_repeat 2 150 0 347 200 111 59 chrX 65035528 65035640 -111938500 + L1ME4a LINE L1 5980 6102 -19 1952 152 0 3 chrX 65035640 65035943 -111938197 - AluJo SINE Alu -10 302 1 347 200 111 59 chrX 65035943 65035965 -111938175 + L1ME4a LINE L1 6102 6121 0 2449 85 0 0 chrX 65036022 65036327 -111937813 - AluSc SINE Alu -4 305 1 2131 107 7 3 chrX 65036470 65036761 -111937379 + AluSg SINE Alu 1 292 -18 1269 158 33 38 chrX 65036804 65037044 -111937096 + L1MC2 LINE L1 5673 5911 -433 1465 174 95 12 chrX 65037044 65037400 -111936740 + MSTC LTR MaLR 1 427 -1 2724 111 28 25 chrX 65037400 65037647 -111936493 + L1MC2 LINE L1 5906 6156 -188 366 23 0 0 chrX 65037647 65037690 -111936450 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2724 111 28 25 chrX 65037690 65037875 -111936265 + L1MC2 LINE L1 6156 6339 -5 230 206 122 65 chrX 65038304 65038360 -111935780 + MIR SINE MIR 135 186 -76 2217 156 30 50 chrX 65038360 65038758 -111935382 + MLT1B LTR MaLR 1 390 0 230 206 122 65 chrX 65038758 65038808 -111935332 + MIR SINE MIR 186 247 -15 20931 165 26 16 chrX 65038839 65040077 -111934063 - L1 LINE L1 -1384 6181 4958 414 0 0 0 chrX 65040077 65040123 -111934017 + (TG)n Simple_repeat Simple_repeat 1 46 0 2025 89 89 7 chrX 65040127 65040408 -111933732 - AluSq SINE Alu -9 304 1 20931 165 26 16 chrX 65040408 65040972 -111933168 - L1 LINE L1 -2609 4956 4400 2192 120 0 0 chrX 65040972 65041271 -111932869 - AluY SINE Alu -12 299 1 20931 165 26 16 chrX 65041271 65042005 -111932135 - L1 LINE L1 -3165 4400 3675 1772 141 0 8 chrX 65042005 65042261 -111931879 - AluSq SINE Alu -59 254 1 20931 165 26 16 chrX 65042261 65045802 -111928338 - L1 LINE L1 -3890 3675 17 2436 139 13 21 chrX 65045803 65046184 -111927956 - MSTC LTR MaLR -50 378 1 439 213 30 3 chrX 65046184 65046324 -111927816 - L1MC5 LINE L1 -206 7836 7609 326 169 0 0 chrX 65046347 65046406 -111927734 - MER112 DNA MER1_type -103 157 99 309 26 0 0 chrX 65046407 65046445 -111927695 + (TG)n Simple_repeat Simple_repeat 1 38 0 474 311 68 0 chrX 65046529 65046719 -111927421 + L1M4 LINE L1 4052 4254 -1892 2251 123 0 0 chrX 65046760 65047068 -111927072 + AluSx SINE Alu 1 308 -4 1548 170 6 64 chrX 65047218 65047548 -111926592 + AluJo SINE Alu 1 311 -1 922 189 6 0 chrX 65047649 65047808 -111926332 - AluJo SINE Alu -16 296 137 598 195 107 12 chrX 65047820 65047989 -111926151 - L1ME3A LINE L1 0 6170 5986 21 0 0 0 chrX 65047995 65048016 -111926124 + AT_rich Low_complexity Low_complexity 1 21 0 658 219 57 158 chrX 65048470 65049135 -111925005 - LTR38B LTR ERV1 -12 598 1 234 65 0 0 chrX 65049135 65049166 -111924974 - LTR8A LTR ERV1 -696 31 1 2188 95 20 3 chrX 65049557 65049862 -111924278 + AluSq SINE Alu 1 310 -3 239 250 195 0 chrX 65050765 65050929 -111923211 - L1MC4a LINE L1 -1636 6172 5977 759 153 8 8 chrX 65050930 65051061 -111923079 - AluJo SINE Alu -171 131 1 195 100 0 0 chrX 65051095 65051125 -111923015 + (TA)n Simple_repeat Simple_repeat 2 31 0 456 188 0 0 chrX 65051137 65051206 -111922934 - AluJ/FRAM SINE Alu -30 282 214 584 246 104 33 chrX 65051214 65051425 -111922715 - L1MC4a LINE L1 -1977 5831 5606 451 269 88 29 chrX 65051461 65051632 -111922508 - L1MC4a LINE L1 -1169 4977 4797 551 239 99 46 chrX 65051740 65052078 -111922062 - MLT1J LTR MaLR -52 459 33 281 232 0 0 chrX 65052652 65052708 -111921432 + MER94 DNA DNA 1 56 -78 852 136 14 27 chrX 65052708 65052855 -111921285 + AluJb SINE Alu 137 281 -31 572 175 74 115 chrX 65053129 65053348 -111920792 - LTR56 LTR ERV1 0 443 230 2435 92 0 0 chrX 65053348 65053653 -111920487 + AluSx SINE Alu 1 305 -7 961 214 29 29 chrX 65053653 65053859 -111920281 - MLT1E LTR MaLR -375 218 13 1054 270 81 26 chrX 65053860 65054245 -111919895 - LTR16A LTR ERVL -20 430 25 2308 96 7 43 chrX 65054333 65054623 -111919517 + MER51A LTR ERV1 160 518 -116 3198 153 52 76 chrX 65054623 65055331 -111918809 + LTR8 LTR ERV1 1 691 0 2308 96 7 43 chrX 65055331 65055427 -111918713 + MER51A LTR ERV1 518 616 -18 1185 130 5 11 chrX 65055427 65055612 -111918528 - AluJo SINE Alu -128 184 1 329 245 112 0 chrX 65055613 65055711 -111918429 + MIR SINE MIR 102 210 -52 316 203 0 58 chrX 65058348 65058417 -111915723 - MIR SINE MIR -102 106 42 2934 204 90 83 chrX 65059265 65060055 -111914085 - L1MD2 LINE L1 -15 6227 5433 380 211 146 24 chrX 65060953 65061076 -111913064 - MIR SINE MIR -1 261 124 24 0 0 0 chrX 65061439 65061463 -111912677 + AT_rich Low_complexity Low_complexity 1 24 0 696 249 63 36 chrX 65061665 65061886 -111912254 - L1ME3A LINE L1 0 6170 5944 1806 160 10 33 chrX 65062286 65062586 -111911554 - AluJb SINE Alu -18 294 2 891 150 0 0 chrX 65062618 65062751 -111911389 + FLAM_C SINE Alu 1 133 -10 604 122 65 0 chrX 65063091 65063198 -111910942 - L1MA3 LINE L1 0 6305 6192 1718 155 26 16 chrX 65063204 65063507 -111910633 - AluJb SINE Alu -6 306 1 627 214 41 26 chrX 65063613 65063782 -111910358 - MER33 DNA MER1_type -260 64 1 610 251 60 127 chrX 65064173 65064504 -111909636 + L2 LINE L2 3005 3313 0 1776 235 85 43 chrX 65064815 65065146 -111908994 - MER68 LTR ERV1 -4 558 195 1960 136 16 19 chrX 65065146 65065455 -111908685 + AluJb SINE Alu 2 309 -3 1776 235 85 43 chrX 65065455 65065655 -111908485 - MER68 LTR ERV1 -367 195 5 557 182 0 20 chrX 65066414 65066513 -111907627 - L1ME3A LINE L1 -59 6111 6015 635 117 0 146 chrX 65066801 65066938 -111907202 - MER58B DNA MER1_type -6 335 219 2164 117 7 0 chrX 65067503 65067801 -111906339 + AluSg SINE Alu 1 300 -10 1549 181 3 38 chrX 65067995 65068287 -111905853 - AluJo SINE Alu -30 282 1 349 224 0 0 chrX 65068349 65068416 -111905724 - MIR SINE MIR -103 105 39 1396 231 99 82 chrX 65070374 65070427 -111903713 - LTR33 LTR ERVL -27 494 443 1623 165 18 7 chrX 65070427 65070699 -111903441 + AluJb SINE Alu 1 275 -37 282 56 0 0 chrX 65070704 65070740 -111903400 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 1396 231 99 82 chrX 65070740 65071166 -111902974 - LTR33 LTR ERVL -81 440 1 1575 119 197 31 chrX 65071686 65072006 -111902134 + THE1C LTR MaLR 3 375 0 390 218 27 36 chrX 65072321 65072431 -111901709 - L1MC5 LINE L1 -47 7914 7806 258 105 0 0 chrX 65072458 65072496 -111901644 + (CA)n Simple_repeat Simple_repeat 2 39 0 209 240 10 0 chrX 65072529 65072625 -111901515 + (TA)n Simple_repeat Simple_repeat 1 97 0 1947 146 7 3 chrX 65072627 65072921 -111901219 - AluJb SINE Alu -17 295 1 511 244 99 48 chrX 65072925 65072972 -111901168 - L1MC5 LINE L1 -180 7781 7738 1319 112 108 9 chrX 65072972 65073186 -111900954 - MER46A DNA MER2_type -1 235 1 511 244 99 48 chrX 65073186 65073470 -111900670 - L1MC5 LINE L1 -223 7738 7433 276 30 0 0 chrX 65073520 65073553 -111900587 + (TG)n Simple_repeat Simple_repeat 2 34 0 460 241 21 50 chrX 65073862 65074003 -111900137 + L2 LINE L2 3169 3305 -8 1768 184 0 23 chrX 65074046 65074356 -111899784 + AluJo SINE Alu 1 303 -9 387 0 0 0 chrX 65074537 65074580 -111899560 + (TG)n Simple_repeat Simple_repeat 2 44 0 2357 104 0 0 chrX 65075725 65076034 -111898106 - AluSc SINE Alu 0 309 1 1140 172 21 5 chrX 65076360 65076546 -111897594 + MER5A DNA MER1_type 1 189 0 633 174 185 43 chrX 65076559 65076743 -111897397 - MER20 DNA MER1_type -9 210 1 196 237 0 0 chrX 65078541 65078579 -111895561 - L2 LINE L2 -20 3293 3256 2444 219 168 26 chrX 65078594 65079519 -111894621 - HAL1 LINE L1 0 2507 1452 342 259 56 19 chrX 65079623 65079731 -111894409 - MIR SINE MIR -142 120 9 2211 96 10 7 chrX 65080391 65080682 -111893458 + AluSx SINE Alu 1 292 -20 2237 65 7 11 chrX 65081044 65081322 -111892818 + AluY SINE Alu 1 277 -34 384 22 0 0 chrX 65081345 65081390 -111892750 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 482 279 95 19 chrX 65081956 65082114 -111892026 - MIR SINE MIR -56 206 37 25 31 0 0 chrX 65084073 65084105 -111890035 + AT_rich Low_complexity Low_complexity 1 32 0 297 145 96 24 chrX 65084124 65084142 -111889998 - L1MA7 LINE L1 -1 6290 6275 2002 118 36 0 chrX 65084142 65084421 -111889719 - AluSx SINE Alu -23 289 1 297 145 96 24 chrX 65084421 65084485 -111889655 - L1MA7 LINE L1 -16 6275 6202 351 0 0 0 chrX 65084738 65084777 -111889363 + (TG)n Simple_repeat Simple_repeat 2 40 0 1179 162 219 7 chrX 65085005 65085283 -111888857 + MER44D DNA MER2_type 2 608 -1 1033 233 25 8 chrX 65085760 65085996 -111888144 + MIR SINE MIR 2 241 -21 208 378 161 24 chrX 65086268 65086517 -111887623 + L2 LINE L2 2990 3272 0 2347 101 0 0 chrX 65087083 65087380 -111886760 - AluSx SINE Alu -15 297 1 25 0 0 0 chrX 65087385 65087410 -111886730 + AT_rich Low_complexity Low_complexity 1 25 0 2239 93 0 69 chrX 65087423 65087756 -111886384 + AluSx SINE Alu 2 311 -1 1228 173 14 5 chrX 65088360 65088574 -111885566 + L1MC4 LINE L1 6774 6989 -1053 385 256 190 0 chrX 65089606 65089743 -111884397 + MIR3 SINE MIR 31 193 -15 649 153 153 8 chrX 65090326 65090444 -111883696 - AluJo SINE Alu -176 136 2 1951 128 20 0 chrX 65090604 65090901 -111883239 + AluSx SINE Alu 1 303 -9 662 210 66 22 chrX 65092140 65092321 -111881819 - MER53 DNA DNA 0 189 1 245 250 83 0 chrX 65092357 65092429 -111881711 + L2 LINE L2 2711 2788 -526 422 299 163 21 chrX 65092627 65093002 -111881138 + L2 LINE L2 2329 2756 -558 2182 120 3 0 chrX 65093307 65093615 -111880525 + AluSx SINE Alu 1 309 -3 3652 108 21 0 chrX 65094216 65094735 -111879405 - L1MA2 LINE L1 0 6698 6169 3124 110 43 11 chrX 65094739 65095203 -111878937 - L1PA13 LINE L1 -4 6159 5681 1240 135 231 18 chrX 65095223 65095452 -111878688 - AluSg1 SINE Alu -31 278 1 7332 143 13 12 chrX 65095452 65095651 -111878489 - L1PA13 LINE L1 -472 5689 5492 1872 165 0 10 chrX 65095651 65095954 -111878186 - AluJb SINE Alu -12 300 1 7332 143 13 12 chrX 65095954 65096805 -111877335 - L1PA13 LINE L1 -669 5492 4640 2341 80 0 58 chrX 65096805 65097130 -111877010 + AluSx SINE Alu 1 306 -6 7332 143 13 12 chrX 65097130 65097704 -111876436 - L1PA13 LINE L1 -1521 4640 4068 * 13387 178 40 28 chrX 65097691 65099090 -111875050 - L1MA2 LINE L1 -520 6178 4797 2366 127 16 35 chrX 65099090 65099461 -111874679 + THE1B LTR MaLR 1 364 0 12660 90 5 0 chrX 65099462 65101034 -111873106 + THE1B-int LTR MaLR 2 1580 0 2430 137 11 19 chrX 65101034 65101399 -111872741 + THE1B LTR MaLR 1 362 -2 13387 178 40 28 chrX 65101399 65103561 -111870579 - L1MA2 LINE L1 -1901 4797 2572 3263 103 11 7 chrX 65103561 65104017 -111870123 - L1PB1 LINE L1 -1 6150 5693 13387 178 40 28 chrX 65104017 65104035 -111870105 - L1MA2 LINE L1 -4126 2572 2556 1916 101 73 3 chrX 65104173 65104459 -111869681 - L1PB1 LINE L1 0 6151 5846 447 146 34 0 chrX 65104473 65104562 -111869578 - L1PB1 LINE L1 -698 5605 5514 35081 50 99 1 chrX 65104573 65110157 -111863983 - L1PA4 LINE L1 -3 6152 1 12909 213 23 14 chrX 65110189 65112812 -111861328 + L1PBa LINE L1 6 2603 -4259 3091 80 2 37 chrX 65112812 65113276 -111860864 - LTR7 LTR ERV1 -2 448 1 12909 213 23 14 chrX 65113276 65113953 -111860187 + L1PBa LINE L1 2603 3272 -3590 2173 109 3 7 chrX 65113953 65114246 -111859894 + AluSx SINE Alu 1 292 -20 12909 213 23 14 chrX 65114246 65115614 -111858526 + L1PBa LINE L1 3272 5024 -1838 2332 101 0 0 chrX 65115614 65115910 -111858230 + AluSq SINE Alu 5 300 -13 12909 213 23 14 chrX 65115910 65116805 -111857335 + L1PBa LINE L1 5024 5909 -953 624 158 0 0 chrX 65116805 65116900 -111857240 - AluJ/FLAM SINE Alu -217 95 1 568 92 151 0 chrX 65116900 65117019 -111857121 - L1M1 LINE L1 -814 5489 5353 201 279 0 0 chrX 65117019 65117062 -111857078 + L2 LINE L2 2594 2636 -678 372 326 75 14 chrX 65117431 65117578 -111856562 - MER5A DNA MER1_type -31 158 3 30 0 0 0 chrX 65118206 65118236 -111855904 + AT_rich Low_complexity Low_complexity 1 30 0 2215 77 7 27 chrX 65118544 65118842 -111855298 - AluSp SINE Alu -21 292 1 186 103 0 0 chrX 65119404 65119433 -111854707 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 23 0 0 0 chrX 65119842 65119865 -111854275 + AT_rich Low_complexity Low_complexity 1 23 0 1725 176 3 13 chrX 65119913 65120219 -111853921 + AluJo SINE Alu 1 303 -9 2240 107 3 0 chrX 65120767 65121057 -111853083 - AluSx SINE Alu -21 291 1 810 193 14 33 chrX 65121223 65121436 -111852704 + L1MD3 LINE L1 7787 7995 0 21 0 0 0 chrX 65122430 65122451 -111851689 + AT_rich Low_complexity Low_complexity 1 21 0 539 306 44 34 chrX 65122574 65122780 -111851360 + MIR SINE MIR 26 233 -29 209 237 0 17 chrX 65123965 65124024 -111850116 + (TA)n Simple_repeat Simple_repeat 2 59 0 31 26 0 0 chrX 65125577 65125615 -111848525 + AT_rich Low_complexity Low_complexity 1 38 0 12495 75 12 0 chrX 65125749 65127436 -111846704 - HERVL-A2 LTR ERVL -3946 1708 1 502 173 0 13 chrX 65127476 65127626 -111846514 + (TA)n Simple_repeat Simple_repeat 2 149 0 2988 75 12 7 chrX 65127626 65128037 -111846103 - MLT2A2 LTR ERVL -40 413 1 1211 154 26 13 chrX 65128037 65128270 -111845870 + MSTA LTR MaLR 154 389 -39 23246 44 2 0 chrX 65128271 65131293 -111842847 + L1P LINE L1 684 3711 -2435 4010 24 0 0 chrX 65131293 65131786 -111842354 + L1P LINE L1 3425 3917 -2229 480 327 32 7 chrX 65131787 65132030 -111842110 - L1M2 LINE L1 -6543 295 13 242 297 20 79 chrX 65133274 65133375 -111840765 - MIR3 SINE MIR -21 187 93 4999 84 16 1 chrX 65133924 65134618 -111839522 - L1PA13 LINE L1 0 6163 5460 3014 218 81 16 chrX 65134625 65135602 -111838538 + L1PB1 LINE L1 6 1045 -5818 327 156 0 16 chrX 65135607 65135671 -111838469 + L1PB1 LINE L1 1094 1156 -5707 13021 206 40 14 chrX 65135676 65136287 -111837853 + L1PB1 LINE L1 1311 1905 -4957 2495 72 7 0 chrX 65136287 65136592 -111837548 + AluY SINE Alu 1 307 -4 13021 206 40 14 chrX 65136592 65138818 -111835322 + L1PB1 LINE L1 1905 4355 -2507 2745 62 0 11 chrX 65138818 65139173 -111834967 + L1PA5 LINE L1 5804 6154 0 13021 206 40 14 chrX 65139173 65140976 -111833164 + L1PB1 LINE L1 4355 6110 -752 42024 41 1 1 chrX 65140977 65147128 -111827012 + L1PA3 LINE L1 1 6151 -4 4584 128 12 4 chrX 65147424 65147823 -111826317 + L1PB1 LINE L1 6101 6510 -357 369 0 0 0 chrX 65147823 65147864 -111826276 + (TA)n Simple_repeat Simple_repeat 2 42 0 4584 128 12 4 chrX 65147864 65148222 -111825918 + L1PB1 LINE L1 6510 6864 -3 477 15 73 0 chrX 65148243 65148311 -111825829 - L1P4 LINE L1 -688 5475 5403 31 26 0 0 chrX 65148477 65148515 -111825625 + AT_rich Low_complexity Low_complexity 1 38 0 1368 125 0 0 chrX 65199113 65199297 -111774843 + AluSg/x SINE Alu 117 300 -12 1017 295 51 33 chrX 65200444 65200818 -111773322 + L1MC4a LINE L1 5441 5826 -1982 2421 86 3 0 chrX 65200818 65201119 -111773021 - AluSx SINE Alu -10 302 1 1017 295 51 33 chrX 65201119 65201195 -111772945 + L1MC4a LINE L1 5826 5899 -1909 2409 85 3 0 chrX 65201380 65201687 -111772453 + AluSp SINE Alu 1 308 -5 367 265 44 0 chrX 65202933 65203069 -111771071 + L1ME LINE L1 5628 5769 -352 2398 89 3 3 chrX 65203321 65203634 -111770506 + AluSq SINE Alu 1 313 0 22 0 0 0 chrX 65203905 65203927 -111770213 + AT_rich Low_complexity Low_complexity 1 22 0 466 329 6 24 chrX 65204262 65204429 -111769711 + L2 LINE L2 2897 3060 -212 5788 237 83 40 chrX 65204462 65205483 -111768657 + L2 LINE L2 1155 2131 -1182 910 191 20 15 chrX 65205483 65205687 -111768453 + MER3 DNA MER1_type 5 209 0 5788 237 83 40 chrX 65205687 65206162 -111767978 + L2 LINE L2 2131 2584 -729 1618 62 0 0 chrX 65206162 65206354 -111767786 - AluSq SINE Alu -119 194 3 5788 237 83 40 chrX 65206354 65206922 -111767218 + L2 LINE L2 2584 3309 -4 185 348 37 88 chrX 65206973 65207350 -111766790 - L2 LINE L2 -108 3164 2807 856 321 71 55 chrX 65207679 65207915 -111766225 - L2 LINE L2 -1019 2295 2064 2253 102 3 3 chrX 65207915 65208208 -111765932 + AluSx SINE Alu 5 297 -15 856 321 71 55 chrX 65208208 65208784 -111765356 - L2 LINE L2 -1250 2064 1470 1723 139 61 41 chrX 65209558 65209853 -111764287 + AluSg SINE Alu 1 301 -9 694 263 63 63 chrX 65210256 65210652 -111763488 + L1ME4a LINE L1 5270 5665 -2143 439 265 57 78 chrX 65210701 65210894 -111763246 + L1ME4a LINE L1 5783 5968 -153 617 118 10 0 chrX 65210894 65210996 -111763144 + L1MB7 LINE L1 6081 6183 -1 439 265 57 78 chrX 65210996 65211134 -111763006 + L1ME4a LINE L1 5968 6107 -14 2293 113 3 0 chrX 65211965 65212276 -111761864 + AluSx SINE Alu 1 312 0 632 201 18 55 chrX 65212322 65212519 -111761621 + L1MC4 LINE L1 7600 7794 -42 2268 92 7 0 chrX 65212519 65212812 -111761328 - AluSg SINE Alu -15 295 1 632 201 18 55 chrX 65212812 65212847 -111761293 + L1MC4 LINE L1 7794 7829 -7 1784 137 0 70 chrX 65214330 65214467 -111759673 + AluJo SINE Alu 14 159 -153 2385 94 0 0 chrX 65214467 65214766 -111759374 + AluSq SINE Alu 1 299 -14 1784 137 0 70 chrX 65214766 65214971 -111759169 + AluJo SINE Alu 159 312 0 3242 172 27 1 chrX 65215092 65215789 -111758351 - L1 LINE L1 -1231 4915 4201 2203 110 0 3 chrX 65215789 65216089 -111758051 - AluSq SINE Alu -14 299 1 3505 273 13 14 chrX 65216093 65217383 -111756757 - L1PBb LINE L1 -3233 3616 2328 801 278 72 26 chrX 65217380 65217945 -111756195 - L1PBb LINE L1 -4814 2035 1358 * 290 302 0 0 chrX 65217957 65218043 -111756097 - L1PBb LINE L1 -5290 1559 1474 4865 160 19 24 chrX 65218569 65220138 -111754002 + L1PA16 LINE L1 4556 6131 -35 2216 100 0 0 chrX 65220138 65220418 -111753722 + AluSx SINE Alu 1 280 -32 330 87 0 0 chrX 65220420 65220466 -111753674 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 4865 160 19 24 chrX 65220466 65220499 -111753641 + L1PA16 LINE L1 6132 6150 -16 441 171 0 0 chrX 65220523 65220599 -111753541 - AluJ/FRAM SINE Alu -18 294 219 1998 148 7 61 chrX 65220770 65221181 -111752959 - MER61B LTR ERV1 -36 389 1 302 280 98 15 chrX 65221186 65221318 -111752822 - MIR SINE MIR -57 205 63 498 251 108 46 chrX 65221381 65221576 -111752564 - MIR SINE MIR 0 262 56 23 0 0 0 chrX 65221713 65221736 -111752404 + AT_rich Low_complexity Low_complexity 1 23 0 1868 141 10 36 chrX 65222135 65222439 -111751701 + AluJo SINE Alu 1 296 -16 321 249 72 99 chrX 65222962 65223183 -111750957 + MER20 DNA MER1_type 1 215 -4 1778 178 16 3 chrX 65223196 65223499 -111750641 + AluJb SINE Alu 5 311 -1 1800 128 47 73 chrX 65223865 65224247 -111749893 + THE1C LTR MaLR 1 372 -3 10165 107 6 65 chrX 65224259 65224431 -111749709 + THE1C-int LTR MaLR 1 182 -1398 2217 123 3 0 chrX 65224431 65224733 -111749407 - AluSp SINE Alu -10 303 1 10165 107 6 65 chrX 65224733 65224880 -111749260 + THE1C-int LTR MaLR 182 336 -1244 2574 45 3 3 chrX 65224880 65225190 -111748950 + AluY SINE Alu 1 310 -1 10165 107 6 65 chrX 65225190 65226546 -111747594 + THE1C-int LTR MaLR 336 1578 -2 2048 106 76 31 chrX 65226548 65226905 -111747235 + THE1C LTR MaLR 1 373 -2 226 246 188 0 chrX 65227349 65227418 -111746722 + L2 LINE L2 3223 3304 -9 798 234 51 70 chrX 65227548 65228158 -111745982 + L1MC5 LINE L1 7317 7914 -47 2285 79 4 0 chrX 65228524 65228830 -111745310 - AluSg SINE Alu 0 307 1 253 289 69 44 chrX 65228868 65229072 -111745068 + L1P4 LINE L1 5264 5450 -715 258 298 39 62 chrX 65229082 65229340 -111744800 + L1ME LINE L1 5527 5778 -343 866 145 15 0 chrX 65230349 65230480 -111743660 - FLAM_A SINE Alu 0 133 1 963 180 0 6 chrX 65230847 65231008 -111743132 + FRAM SINE Alu 1 160 -6 29 28 0 0 chrX 65231011 65231047 -111743093 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 65231236 65231264 -111742876 + AT_rich Low_complexity Low_complexity 1 28 0 2343 101 0 3 chrX 65232077 65232385 -111741755 + AluSg SINE Alu 1 307 -3 634 266 124 23 chrX 65232603 65232821 -111741319 + MIR SINE MIR 9 248 -14 189 0 0 0 chrX 65233011 65233032 -111741108 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1165 228 0 13 chrX 65233048 65233280 -111740860 - AluJo SINE Alu -83 229 1 1858 88 0 20 chrX 65233920 65234171 -111739969 - AluSx SINE Alu -12 300 55 227 256 68 68 chrX 65234388 65234579 -111739561 - HAL1 LINE L1 -742 1765 1575 596 213 38 12 chrX 65234587 65234747 -111739393 + L1M4b LINE L1 11 174 -6685 805 149 13 7 chrX 65234750 65234904 -111739236 + L1M4b LINE L1 318 472 -6383 1476 104 35 27 chrX 65234908 65235167 -111738973 + L1MA2 LINE L1 6037 6297 -7 4714 145 31 32 chrX 65235167 65235331 -111738809 + L1MB7 LINE L1 5163 5326 -858 2540 57 0 0 chrX 65235331 65235632 -111738508 + AluY SINE Alu 1 301 -10 4714 145 31 32 chrX 65235632 65236482 -111737658 + L1MB7 LINE L1 5326 6179 -5 1420 250 86 11 chrX 65236515 65237048 -111737092 - L1MC4a LINE L1 -1960 5825 5266 2524 80 0 3 chrX 65237242 65237556 -111736584 - AluSq SINE Alu 0 313 1 374 234 22 0 chrX 65237560 65237670 -111736470 + L1MD3 LINE L1 6223 7973 -22 356 209 64 9 chrX 65237693 65237803 -111736337 + L1MC4 LINE L1 7923 8038 -4 1835 111 3 85 chrX 65237871 65238043 -111736097 - AluJb SINE Alu -30 282 144 2419 103 0 0 chrX 65238043 65238355 -111735785 - AluSx SINE Alu 0 312 1 1835 111 3 85 chrX 65238355 65238489 -111735651 - AluJb SINE Alu -168 144 1 23 68 0 0 chrX 65238533 65238577 -111735563 + AT_rich Low_complexity Low_complexity 1 44 0 412 223 81 106 chrX 65238631 65239004 -111735136 - L1ME4a LINE L1 -86 6035 5673 2079 130 0 14 chrX 65239004 65239297 -111734843 - AluSx SINE Alu -23 289 1 412 223 81 106 chrX 65239297 65239368 -111734772 - L1ME4a LINE L1 -448 5673 5602 269 287 197 0 chrX 65239555 65239677 -111734463 - L3b LINE CR1 -324 1259 1114 405 0 0 0 chrX 65240111 65240156 -111733984 + (TG)n Simple_repeat Simple_repeat 2 46 0 1028 175 67 56 chrX 65240164 65240524 -111733616 - L1MC5 LINE L1 -84 7877 7514 1781 171 0 38 chrX 65240574 65240889 -111733251 + AluJb SINE Alu 1 303 -9 23 54 0 0 chrX 65241292 65241329 -111732811 + AT_rich Low_complexity Low_complexity 1 37 0 1923 89 48 3 chrX 65241346 65241639 -111732501 + L1MA2 LINE L1 5999 6304 0 2036 140 3 0 chrX 65241991 65242276 -111731864 + AluSx SINE Alu 1 286 -26 308 126 46 0 chrX 65242283 65242370 -111731770 + (TA)n Simple_repeat Simple_repeat 2 92 0 2320 92 0 13 chrX 65243030 65243334 -111730806 - AluSx SINE Alu -12 300 1 2382 91 0 0 chrX 65243659 65243957 -111730183 + AluSx SINE Alu 1 298 -14 358 327 18 30 chrX 65244848 65245013 -111729127 + L1ME4a LINE L1 5869 6031 -90 27 0 0 0 chrX 65245087 65245114 -111729026 + AT_rich Low_complexity Low_complexity 1 27 0 473 266 175 14 chrX 65245594 65245737 -111728403 - MER5A DNA MER1_type -1 188 23 509 216 0 0 chrX 65245771 65245868 -111728272 - L1PA16 LINE L1 -9 6157 6061 33 0 0 0 chrX 65246453 65246486 -111727654 + AT_rich Low_complexity Low_complexity 1 33 0 540 118 47 184 chrX 65246694 65246906 -111727234 + L1MC4 LINE L1 7860 8042 0 2342 80 0 10 chrX 65246911 65247222 -111726918 + AluSg SINE Alu 1 308 -2 2369 75 3 10 chrX 65247367 65247673 -111726467 - AluSq SINE Alu -9 304 1 192 288 34 0 chrX 65247998 65248057 -111726083 + L2 LINE L2 3210 3270 -2 2013 142 0 7 chrX 65248115 65248411 -111725729 + AluJo SINE Alu 1 294 -18 2186 110 0 0 chrX 65248591 65248894 -111725246 + AluSx SINE Alu 1 303 0 679 133 0 47 chrX 65248910 65249038 -111725102 + MER39B LTR ERV1 456 577 -76 29 0 0 0 chrX 65249051 65249080 -111725060 + AT_rich Low_complexity Low_complexity 1 29 0 625 126 29 10 chrX 65249080 65249183 -111724957 - Tigger3(Golem) DNA MER2_type -1 3028 2924 21 36 0 0 chrX 65249186 65249214 -111724926 + AT_rich Low_complexity Low_complexity 1 28 0 457 134 0 0 chrX 65249319 65249386 -111724754 - Tigger3(Golem) DNA MER2_type -2949 80 14 551 192 212 0 chrX 65249491 65249637 -111724503 - MER5A DNA MER1_type 0 189 13 2319 100 0 7 chrX 65250043 65250343 -111723797 + AluSx SINE Alu 1 298 -14 2265 114 0 0 chrX 65250594 65250891 -111723249 + AluSg SINE Alu 1 297 -13 1930 155 3 3 chrX 65250927 65251217 -111722923 - AluJb SINE Alu -22 290 1 3348 153 19 14 chrX 65251276 65251899 -111722241 + L1MB7 LINE L1 5540 6165 -19 700 249 127 40 chrX 65252457 65252938 -111721202 - L1ME4a LINE L1 -23 6098 5576 22 0 0 0 chrX 65255170 65255192 -111718948 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chrX 65255469 65255512 -111718628 + (CA)n Simple_repeat Simple_repeat 2 44 0 239 305 144 24 chrX 65255512 65255679 -111718461 + MIR SINE MIR 21 219 -43 280 217 58 29 chrX 65255708 65255777 -111718363 - L2 LINE L2 -11 3302 3232 525 307 96 72 chrX 65255791 65256565 -111717575 - L2 LINE L2 -172 3100 2239 400 228 73 112 chrX 65257075 65257308 -111716832 + L1ME1 LINE L1 5943 6166 0 647 143 59 0 chrX 65257312 65257431 -111716709 - MER3 DNA MER1_type -62 147 22 1780 155 10 14 chrX 65257637 65257928 -111716212 + AluJb SINE Alu 4 293 -19 1473 109 10 0 chrX 65258291 65258493 -111715647 + AluSq SINE Alu 1 204 -109 683 127 0 36 chrX 65258514 65258624 -111715516 + AluSg/x SINE Alu 190 295 -17 509 235 0 10 chrX 65258627 65258725 -111715415 - L2 LINE L2 0 3313 3217 2074 86 65 0 chrX 65258973 65259252 -111714888 + AluSq SINE Alu 1 297 -16 241 262 274 0 chrX 65259603 65259687 -111714453 + MIR3 SINE MIR 89 195 -13 2068 154 6 3 chrX 65259777 65260120 -111714020 + MLT1A1 LTR MaLR 22 365 0 338 296 28 9 chrX 65260144 65260252 -111713888 - MIR SINE MIR -142 120 11 216 222 22 0 chrX 65260728 65260773 -111713367 - MIR SINE MIR -64 144 99 817 159 8 0 chrX 65261302 65261428 -111712712 - FLAM_C SINE Alu -6 127 1 388 234 28 28 chrX 65261836 65261943 -111712197 + L1MC4a LINE L1 5831 5937 -1871 2278 86 3 10 chrX 65261989 65262291 -111711849 + AluSq SINE Alu 1 300 -13 1775 112 12 0 chrX 65262482 65262733 -111711407 - AluSg SINE Alu 0 310 57 964 82 0 0 chrX 65263425 65263560 -111710580 - L1PA13 LINE L1 -1 6162 6028 2030 171 100 43 chrX 65263683 65263825 -111710315 - MER69 DNA AcHobo -1 2525 2393 2172 120 0 10 chrX 65263825 65264126 -111710014 + AluSx SINE Alu 1 298 -14 2030 171 100 43 chrX 65264126 65264543 -111709597 - MER69 DNA AcHobo -133 2393 1934 2073 237 0 20 chrX 65264551 65265003 -111709137 - MER69 DNA AcHobo -2083 443 1 23 33 0 0 chrX 65265870 65265900 -111708240 + AT_rich Low_complexity Low_complexity 1 30 0 2277 107 0 3 chrX 65267166 65267475 -111706665 + AluSx SINE Alu 1 308 -4 966 9 9 0 chrX 65267961 65268074 -111706066 + L1PA2 LINE L1 6038 6151 -4 3080 212 61 15 chrX 65268130 65268512 -111705628 + L1ME LINE L1 3793 4156 -1990 2031 142 7 0 chrX 65268512 65268807 -111705333 + AluSx SINE Alu 1 297 -15 3080 212 61 15 chrX 65268807 65269295 -111704845 + L1ME LINE L1 4156 4703 -1443 1311 183 27 47 chrX 65269302 65269603 -111704537 + L1ME1 LINE L1 5290 5584 -582 1169 238 37 53 chrX 65269614 65269913 -111704227 - Cheshire DNA MER1_type -2126 294 1 1830 143 0 56 chrX 65270154 65270305 -111703835 + AluJb SINE Alu 1 126 -186 2281 96 7 0 chrX 65270305 65270598 -111703542 + AluSp SINE Alu 1 295 -18 1830 143 0 56 chrX 65270598 65270768 -111703372 + AluJb SINE Alu 126 304 -8 1076 203 68 88 chrX 65271700 65272131 -111702009 + L2 LINE L2 2779 3189 -124 2872 164 3 103 chrX 65272131 65272266 -111701874 + MLT1F1 LTR MaLR 1 148 -419 2045 120 17 3 chrX 65272266 65272567 -111701573 - AluSx SINE Alu -7 305 1 2872 164 3 103 chrX 65272567 65273061 -111701079 + MLT1F1 LTR MaLR 148 567 0 1076 203 68 88 chrX 65273061 65273116 -111701024 + L2 LINE L2 3189 3244 -69 401 161 77 62 chrX 65323580 65323710 -111650430 + L1ME1 LINE L1 5911 6042 -124 198 0 0 0 chrX 65323716 65323738 -111650402 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 348 24 0 0 chrX 65323737 65323778 -111650362 + (CA)n Simple_repeat Simple_repeat 1 41 0 2178 128 0 3 chrX 65324863 65325159 -111648981 + AluSx SINE Alu 1 295 -17 266 235 15 0 chrX 65325238 65325306 -111648834 - L1ME LINE L1 -459 5662 5594 389 113 150 0 chrX 65326007 65326087 -111648053 + L1MB1 LINE L1 6075 6166 -2 453 346 28 28 chrX 65326124 65326378 -111647762 + L1ME LINE L1 4773 5026 -1120 265 244 9 26 chrX 65326530 65326645 -111647495 + L1ME LINE L1 5256 5368 -2440 333 293 73 20 chrX 65326690 65326840 -111647300 + L1ME LINE L1 5448 5605 -516 978 251 39 14 chrX 65326879 65327162 -111646978 + L1MC4a LINE L1 5513 5802 -2006 780 123 54 39 chrX 65327253 65327383 -111646757 - FLAM_C SINE Alu 0 133 2 299 254 79 0 chrX 65327384 65327498 -111646642 + L1MC4a LINE L1 5825 5947 -1861 192 361 7 103 chrX 65327677 65327832 -111646308 - MIR SINE MIR -122 140 1 186 263 18 18 chrX 65328018 65328075 -111646065 + MIR SINE MIR 13 69 -193 668 296 64 9 chrX 65328331 65328551 -111645589 + MIR SINE MIR 6 237 -25 1141 165 184 24 chrX 65328696 65328951 -111645189 + AluJo SINE Alu 2 297 -5 1223 142 24 19 chrX 65329056 65329267 -111644873 + Tigger4(Zombi) DNA MER2_type 1 212 -2519 4435 97 41 33 chrX 65329267 65329378 -111644762 + Tigger4(Zombi) DNA MER2_type 1962 2071 -660 1983 142 0 14 chrX 65329378 65329673 -111644467 - AluJo SINE Alu -21 291 1 4435 97 41 33 chrX 65329673 65330321 -111643819 + Tigger4(Zombi) DNA MER2_type 2071 2727 -4 312 226 54 54 chrX 65330325 65330418 -111643722 + L2 LINE L2 3127 3219 -94 260 109 0 22 chrX 65330443 65330489 -111643651 + FLAM SINE Alu 76 120 -13 1074 201 103 0 chrX 65330500 65330714 -111643426 + MIR SINE MIR 26 261 -1 380 241 13 0 chrX 65330724 65330803 -111643337 + L2 LINE L2 3233 3312 -1 279 0 0 0 chrX 65330854 65330885 -111643255 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 3578 35 0 0 chrX 65331014 65331412 -111642728 + SVA Other Other 989 1386 0 195 42 0 0 chrX 65331418 65331442 -111642698 + (A)n Simple_repeat Simple_repeat 1 24 0 901 225 28 0 chrX 65331671 65331849 -111642291 - MIR SINE MIR -64 198 16 451 311 55 40 chrX 65331849 65332177 -111641963 - HAL1 LINE L1 -1740 767 435 307 278 40 75 chrX 65332366 65332539 -111641601 - HAL1 LINE L1 -2333 174 8 906 131 0 0 chrX 65332658 65332788 -111641352 + FLAM_C SINE Alu 2 131 -2 183 211 0 70 chrX 65333573 65333630 -111640510 + L2 LINE L2 3254 3306 -7 195 42 0 0 chrX 65334003 65334027 -111640113 + (TG)n Simple_repeat Simple_repeat 2 25 0 342 170 0 106 chrX 65334150 65334244 -111639896 + L1ME4a LINE L1 5521 5604 -517 1225 147 74 0 chrX 65334248 65334438 -111639702 + AluJo SINE Alu 86 289 -23 2665 31 22 3 chrX 65334461 65334784 -111639356 + L1PA5 LINE L1 5821 6149 -5 457 192 96 158 chrX 65334786 65335254 -111638886 + L1ME4a LINE L1 5610 6048 -73 681 239 31 77 chrX 65335254 65335422 -111638718 - L2 LINE L2 -3 3310 3153 2246 119 0 0 chrX 65335422 65335717 -111638423 + AluSx SINE Alu 1 295 -17 681 239 31 77 chrX 65335717 65335770 -111638370 - L2 LINE L2 -160 3153 3099 1923 124 25 0 chrX 65335794 65336090 -111638050 + AluSx SINE Alu 1 303 0 2346 88 0 0 chrX 65337433 65337729 -111636411 + AluSx SINE Alu 1 296 -16 249 108 0 0 chrX 65338832 65338869 -111635271 + (A)n Simple_repeat Simple_repeat 1 37 0 546 279 71 16 chrX 65339316 65339499 -111634641 + MIR SINE MIR 20 212 -50 1660 151 8 0 chrX 65339949 65340201 -111633939 - AluJo SINE Alu -54 258 5 225 215 0 15 chrX 65340242 65340307 -111633833 - L1ME LINE L1 -224 5897 5834 936 159 0 0 chrX 65340333 65340471 -111633669 + AluJo SINE Alu 1 138 -174 2137 136 0 10 chrX 65340497 65340807 -111633333 - AluSx SINE Alu -5 307 1 976 219 6 0 chrX 65340820 65341003 -111633137 - MIR SINE MIR -67 195 12 328 328 127 11 chrX 65341092 65341281 -111632859 - L2 LINE L2 -258 3014 2804 866 141 0 0 chrX 65341340 65341489 -111632651 + L1MB4 LINE L1 5790 5938 -242 3903 109 27 19 chrX 65341489 65341911 -111632229 + L1PA16 LINE L1 5521 5954 -212 2520 47 0 7 chrX 65341911 65342208 -111631932 + AluY SINE Alu 1 295 -16 3903 109 27 19 chrX 65342208 65342414 -111631726 + L1PA16 LINE L1 5954 6157 -9 1384 136 8 47 chrX 65342426 65342640 -111631500 + L1MB4 LINE L1 5927 6131 -49 2181 108 10 0 chrX 65342640 65342928 -111631212 + AluSx SINE Alu 1 291 -21 1384 136 8 47 chrX 65342928 65342971 -111631169 + L1MB4 LINE L1 6131 6174 -6 314 331 48 16 chrX 65343147 65343271 -111630869 - MIR SINE MIR -64 144 17 2021 136 0 26 chrX 65344059 65344361 -111629779 + AluJb SINE Alu 7 300 -12 304 318 164 0 chrX 65345328 65345438 -111628702 + L2 LINE L2 3186 3313 0 2195 130 3 0 chrX 65346046 65346354 -111627786 - AluJb SINE Alu -3 309 1 2115 110 0 3 chrX 65346407 65346699 -111627441 + AluSx SINE Alu 1 291 -21 27 87 0 0 chrX 65346790 65346859 -111627281 + AT_rich Low_complexity Low_complexity 1 69 0 804 214 124 15 chrX 65346861 65347062 -111627078 - MIR SINE MIR -5 257 35 2051 112 0 39 chrX 65347086 65347391 -111626749 - AluJb SINE Alu -15 297 5 328 148 0 0 chrX 65347554 65347615 -111626525 + Alu SINE Alu 240 300 -1 1786 119 0 16 chrX 65347724 65347977 -111626163 + AluSx SINE Alu 1 249 -63 1290 128 0 11 chrX 65347986 65348166 -111625974 + AluJb SINE Alu 110 287 -25 44 62 0 10 chrX 65348166 65348207 -111625933 + AT_rich Low_complexity Low_complexity 1 41 -55 826 200 40 0 chrX 65348207 65348357 -111625783 + FRAM SINE Alu 1 156 -10 44 62 0 10 chrX 65348357 65348412 -111625728 + AT_rich Low_complexity Low_complexity 41 96 0 2272 88 7 7 chrX 65350461 65350768 -111623372 - AluSq SINE Alu -6 307 1 22 0 0 0 chrX 65350853 65350875 -111623265 + AT_rich Low_complexity Low_complexity 1 22 0 252 226 32 16 chrX 65352996 65353058 -111621082 + MIR SINE MIR 191 253 -9 1620 183 20 13 chrX 65353592 65353892 -111620248 - AluJo SINE Alu -10 302 1 2168 119 10 0 chrX 65354198 65354493 -111619647 + AluSx SINE Alu 1 298 -14 2259 119 0 0 chrX 65355500 65355802 -111618338 + AluSx SINE Alu 1 302 -10 2262 122 0 10 chrX 65356343 65356478 -111617662 + AluSx SINE Alu 1 136 -176 2433 68 3 0 chrX 65356478 65356770 -111617370 + AluSg SINE Alu 2 294 -16 2262 122 0 10 chrX 65356770 65356946 -111617194 + AluSx SINE Alu 136 309 -3 692 219 0 7 chrX 65357427 65357578 -111616562 + MER3 DNA MER1_type 5 154 -55 2051 103 36 23 chrX 65357758 65358059 -111616081 - AluSx SINE Alu -7 305 1 2620 58 0 0 chrX 65358196 65358507 -111615633 + AluY SINE Alu 1 311 0 743 269 117 29 chrX 65358617 65358925 -111615215 + L3 LINE CR1 1054 1388 -189 2369 89 3 0 chrX 65358934 65359236 -111614904 + AluSx SINE Alu 1 303 -9 1203 135 0 0 chrX 65359236 65359414 -111614726 + AluSg/x SINE Alu 135 312 0 430 310 76 14 chrX 65359423 65359568 -111614572 + L3 LINE CR1 1403 1556 -21 374 228 74 31 chrX 65359942 65360104 -111614036 + L1MC4 LINE L1 7870 8038 -4 1856 147 0 36 chrX 65360392 65360698 -111613442 + AluJo SINE Alu 1 295 -17 954 99 23 0 chrX 65361052 65361183 -111612957 + AluSp/q SINE Alu 168 301 -12 507 238 50 31 chrX 65361541 65361701 -111612439 - MIR SINE MIR -29 233 71 2380 71 7 0 chrX 65362046 65362343 -111611797 - AluSq SINE Alu -14 299 1 258 194 48 16 chrX 65363354 65363416 -111610724 - L1MC4 LINE L1 -1 8041 7978 2423 57 7 0 chrX 65363459 65363759 -111610381 + AluSg SINE Alu 1 302 -8 2381 87 0 3 chrX 65363766 65364076 -111610064 + AluSc SINE Alu 1 309 0 1195 119 72 5 chrX 65364098 65364291 -111609849 + AluSg/x SINE Alu 95 300 -12 555 169 0 0 chrX 65364295 65364384 -111609756 - L1MB3 LINE L1 -62 6121 6033 763 212 150 13 chrX 65364399 65364625 -111609515 - L1MC4a LINE L1 -1644 6164 5908 1654 226 32 25 chrX 65364629 65365032 -111609108 - L1MC4a LINE L1 -1959 5849 5444 1192 205 32 18 chrX 65365050 65365330 -111608810 - L1ME1 LINE L1 -3 6163 5879 2102 132 3 3 chrX 65365338 65365648 -111608492 - AluSp SINE Alu 0 313 4 2418 47 3 31 chrX 65366184 65366502 -111607638 + AluSq SINE Alu 1 309 -4 284 226 209 52 chrX 65367767 65367882 -111606258 - L2 LINE L2 -1 3312 3180 350 206 41 31 chrX 65368478 65368575 -111605565 + L1ME4a LINE L1 5938 6035 -86 1705 148 7 30 chrX 65368645 65368948 -111605192 - AluJo SINE Alu -16 296 1 314 104 0 0 chrX 65369097 65369145 -111604995 + L1MB4 LINE L1 6109 6156 -24 721 217 40 26 chrX 65369404 65369556 -111604584 - AluJb SINE Alu -22 290 137 25 31 0 0 chrX 65369725 65369757 -111604383 + AT_rich Low_complexity Low_complexity 1 32 0 1818 155 14 14 chrX 65369757 65370047 -111604093 - AluJo SINE Alu -22 290 1 1527 97 0 14 chrX 65370368 65370575 -111603565 + AluSx SINE Alu 2 205 -107 237 32 0 0 chrX 65370578 65370609 -111603531 + AluSx SINE Alu 265 295 -7 841 176 0 15 chrX 65370777 65370913 -111603227 - AluJo SINE Alu -177 135 2 241 302 147 0 chrX 65370923 65371039 -111603101 - MIR SINE MIR -8 254 122 653 123 7 152 chrX 65371057 65371195 -111602945 + FLAM_C SINE Alu 2 119 -24 396 0 0 0 chrX 65371202 65371246 -111602894 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 228 307 26 61 chrX 65371246 65371360 -111602780 - MIR SINE MIR -132 130 21 459 299 97 0 chrX 65371712 65371866 -111602274 + MIR SINE MIR 86 254 -8 3133 100 43 4 chrX 65372422 65372890 -111601250 + L1MA2 LINE L1 5796 6281 -23 2367 58 7 14 chrX 65372891 65373185 -111600955 + AluY SINE Alu 1 292 -19 241 167 19 0 chrX 65373188 65373242 -111600898 - LTR66 LTR ERVL -171 439 385 26 0 0 0 chrX 65373249 65373275 -111600865 + AT_rich Low_complexity Low_complexity 1 26 0 1692 163 3 21 chrX 65373281 65373592 -111600548 + AluJb SINE Alu 1 306 0 1255 122 11 0 chrX 65373592 65373773 -111600367 + L1MA2 LINE L1 6115 6297 -7 2143 107 3 10 chrX 65374452 65374743 -111599397 + AluSx SINE Alu 1 289 -23 1761 177 0 22 chrX 65375164 65375480 -111598660 + AluJo SINE Alu 1 309 -3 314 288 15 61 chrX 65375759 65375891 -111598249 + MER5A DNA MER1_type 16 141 -48 1494 157 45 87 chrX 65375891 65376203 -111597937 - AluJo SINE Alu -13 299 1 312 243 119 119 chrX 65376203 65376256 -111597884 - MER5A DNA MER1_type -134 55 3 1511 201 0 38 chrX 65376439 65376564 -111597576 + AluJo SINE Alu 1 129 -183 2237 105 0 0 chrX 65376564 65376858 -111597282 - AluSg SINE Alu -12 298 5 1511 201 0 38 chrX 65376858 65377025 -111597115 + AluJo SINE Alu 129 282 -30 2311 83 0 0 chrX 65377027 65377315 -111596825 - AluSg SINE Alu -18 292 5 1103 156 0 0 chrX 65377325 65377479 -111596661 + FRAM SINE Alu 1 146 -30 2126 58 80 0 chrX 65377483 65377759 -111596381 - AluY SINE Alu -13 298 1 1098 198 19 19 chrX 65377790 65377997 -111596143 + MER20 DNA MER1_type 13 219 0 515 248 65 51 chrX 65378013 65378227 -111595913 + MIR SINE MIR 46 262 0 2115 139 0 0 chrX 65378350 65378651 -111595489 - AluSx SINE Alu -11 301 1 344 164 104 0 chrX 65378723 65378790 -111595350 + AluS SINE Alu 5 78 -225 525 190 51 29 chrX 65378890 65379027 -111595113 - AluSp SINE Alu -172 141 2 1303 119 0 11 chrX 65379027 65379212 -111594928 - AluSg/x SINE Alu 0 312 130 2190 117 0 22 chrX 65379212 65379528 -111594612 - AluSq SINE Alu 0 313 5 820 127 48 0 chrX 65379532 65379658 -111594482 - L1MC/D LINE L1 -630 5612 5481 2282 82 0 0 chrX 65379658 65380001 -111594139 - AluSx SINE Alu 0 343 1 1864 159 3 0 chrX 65380015 65380322 -111593818 - AluSx SINE Alu 0 308 1 1751 223 46 22 chrX 65380323 65380490 -111593650 - L1MC/D LINE L1 -989 5157 4995 2365 94 7 0 chrX 65380490 65380799 -111593341 - AluSp SINE Alu -2 311 1 1751 223 46 22 chrX 65380799 65381092 -111593048 - L1MC/D LINE L1 -1151 4995 4686 863 145 7 7 chrX 65381228 65381366 -111592774 + FLAM_C SINE Alu 3 140 -3 297 0 0 0 chrX 65381366 65381399 -111592741 + (TA)n Simple_repeat Simple_repeat 2 34 0 1671 169 4 0 chrX 65381401 65381674 -111592466 + AluJb SINE Alu 1 274 -38 282 56 0 0 chrX 65381678 65381714 -111592426 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2136 109 7 26 chrX 65382369 65382672 -111591468 + AluSx SINE Alu 1 297 -15 27 29 0 0 chrX 65383105 65383139 -111591001 + AT_rich Low_complexity Low_complexity 1 34 0 266 57 0 0 chrX 65383140 65383175 -111590965 - AluY SINE Alu -214 86 52 1276 56 0 6 chrX 65383183 65383345 -111590795 + L1P1 LINE L1 5619 5779 -376 223 69 69 46 chrX 65383345 65383432 -111590708 + (TTATA)n Simple_repeat Simple_repeat 5 93 0 * 268 100 62 0 chrX 65383414 65383494 -111590646 + (TA)n Simple_repeat Simple_repeat 1 85 0 1779 158 0 7 chrX 65383494 65383785 -111590355 - AluJo SINE Alu -23 289 1 4603 35 0 0 chrX 65384078 65384618 -111589522 - L1P LINE L1 -1913 4233 3694 5154 33 3 0 chrX 65384618 65385192 -111588948 + L1PA5 LINE L1 5565 6143 -11 2265 126 0 0 chrX 65385485 65385794 -111588346 - AluSx SINE Alu -3 309 1 2363 67 3 3 chrX 65385924 65386222 -111587918 - AluSg SINE Alu -12 298 1 2296 110 0 3 chrX 65386471 65386772 -111587368 - AluSc SINE Alu -9 300 1 21 0 0 0 chrX 65386779 65386800 -111587340 + AT_rich Low_complexity Low_complexity 1 21 0 1839 170 10 3 chrX 65386805 65387105 -111587035 + AluJb SINE Alu 1 302 -10 1312 148 118 11 chrX 65387108 65387379 -111586761 + L1MA7 LINE L1 5909 6208 -83 24 0 0 0 chrX 65387894 65387918 -111586222 + AT_rich Low_complexity Low_complexity 1 24 0 2273 89 7 0 chrX 65388745 65389037 -111585103 + AluSx SINE Alu 1 294 -18 2281 97 0 0 chrX 65389237 65389526 -111584614 - AluSg SINE Alu -21 289 1 982 98 0 0 chrX 65389526 65389648 -111584492 - AluSq/x SINE Alu -177 136 15 290 123 46 0 chrX 65390496 65390561 -111583579 - L1MB4 LINE L1 -1 6179 6112 6119 105 38 12 chrX 65390678 65391336 -111582804 - L1PB2 LINE L1 -2 6149 5510 194 81 27 0 chrX 65391336 65391373 -111582767 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 6119 105 38 12 chrX 65391373 65391773 -111582367 - L1PB2 LINE L1 -641 5510 5059 1930 120 47 0 chrX 65391773 65392049 -111582091 + AluSx SINE Alu 1 289 -23 6119 105 38 12 chrX 65392049 65392132 -111582008 - L1PB2 LINE L1 -1092 5059 4980 1121 129 0 12 chrX 65392254 65392417 -111581723 - AluSg/x SINE Alu -18 292 132 2237 114 0 19 chrX 65392417 65392733 -111581407 - AluSx SINE Alu -2 310 1 210 290 0 43 chrX 65393076 65393145 -111580995 + L2 LINE L2 2584 2649 -665 256 143 54 36 chrX 65393225 65393281 -111580859 + MER103 DNA DNA 13 69 -97 816 108 0 33 chrX 65393283 65393403 -111580737 - LTR40b LTR ERVL -2 460 345 780 203 0 0 chrX 65393403 65393536 -111580604 - FLAM_A SINE Alu -9 133 1 774 181 35 14 chrX 65393625 65393769 -111580371 + FRAM SINE Alu 20 166 -10 1097 190 63 18 chrX 65393775 65393875 -111580265 - LTR40b LTR ERVL -231 231 137 5500 82 15 0 chrX 65393875 65394556 -111579584 - LTR8 LTR ERV1 0 691 1 1097 190 63 18 chrX 65394556 65394676 -111579464 - LTR40b LTR ERVL -325 137 1 2039 79 38 20 chrX 65394922 65395214 -111578926 - AluSx SINE Alu -15 297 1 2252 59 0 17 chrX 65395494 65395805 -111578335 + AluY SINE Alu 1 306 0 201 250 0 0 chrX 65395854 65395890 -111578250 + L2 LINE L2 3221 3256 -16 2188 100 0 23 chrX 65396076 65396376 -111577764 + AluSx SINE Alu 1 293 -19 5181 84 36 78 chrX 65396515 65397056 -111577084 - L1MA4A LINE L1 -4 6299 5737 2063 105 20 20 chrX 65397056 65397352 -111576788 - AluSx SINE Alu -16 296 1 5181 84 36 78 chrX 65397352 65397556 -111576584 - L1MA4A LINE L1 -566 5737 5526 2368 63 13 10 chrX 65397556 65397857 -111576283 - AluY SINE Alu -9 302 1 5181 84 36 78 chrX 65397857 65397919 -111576221 - L1MA4A LINE L1 -777 5526 5526 2294 84 25 0 chrX 65397919 65398203 -111575937 - AluSx SINE Alu -21 291 1 5181 84 36 78 chrX 65398203 65398252 -111575888 - L1MA4A LINE L1 -776 5527 5477 495 134 0 0 chrX 65398258 65398340 -111575800 - MER83 LTR ERV1 -70 378 297 1436 110 14 73 chrX 65398353 65398768 -111575372 - L1MA4A LINE L1 -743 5403 5105 5333 130 18 59 chrX 65399030 65399705 -111574435 - L1MB2 LINE L1 -17 6154 5453 207 0 0 0 chrX 65399705 65399728 -111574412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5333 130 18 59 chrX 65399728 65399896 -111574244 - L1MB2 LINE L1 -718 5453 5280 2277 95 0 10 chrX 65399896 65400190 -111573950 - AluSp SINE Alu -18 295 5 5333 130 18 59 chrX 65400190 65400276 -111573864 - L1MB2 LINE L1 -891 5280 5273 2170 142 0 0 chrX 65400276 65400586 -111573554 - AluSx SINE Alu 0 312 3 5333 130 18 59 chrX 65400586 65400681 -111573459 - L1MB2 LINE L1 -898 5273 5176 1929 149 3 13 chrX 65400700 65401001 -111573139 + AluSx SINE Alu 1 298 -14 622 235 173 96 chrX 65401028 65401207 -111572933 + L1ME LINE L1 5387 5551 -570 2281 116 0 0 chrX 65401207 65401501 -111572639 - AluSx SINE Alu -16 296 3 622 235 173 96 chrX 65401501 65401670 -111572470 + L1ME LINE L1 5551 5741 -380 2414 92 0 0 chrX 65401854 65402160 -111571980 - AluSg SINE Alu -4 306 1 2172 113 0 0 chrX 65402597 65402904 -111571236 + AluSx SINE Alu 1 307 0 345 102 0 0 chrX 65402941 65402990 -111571150 + Alu SINE Alu 250 298 -3 236 248 48 67 chrX 65403408 65403513 -111570627 + MIR SINE MIR 40 142 -120 2303 102 0 7 chrX 65404631 65404934 -111569206 - AluSx SINE Alu -11 301 1 2059 124 3 3 chrX 65405020 65405311 -111568829 + AluSc SINE Alu 1 291 -18 2382 77 3 26 chrX 65405751 65406064 -111568076 - AluSp SINE Alu -7 306 1 299 337 56 11 chrX 65406175 65406264 -111567876 - L2 LINE L2 -24 3248 3156 945 224 28 9 chrX 65406310 65406524 -111567616 + AluJo SINE Alu 3 220 -92 1562 169 8 15 chrX 65406638 65406904 -111567236 + AluJo SINE Alu 28 291 -21 3029 172 82 18 chrX 65407328 65407951 -111566189 - LTR65 LTR ERV1 -4 665 3 1869 162 0 19 chrX 65408190 65408499 -111565641 + AluJb SINE Alu 1 303 -9 234 213 96 11 chrX 65408514 65408608 -111565532 - L1ME4a LINE L1 -1 6120 6019 2159 101 0 14 chrX 65408885 65409173 -111564967 + AluSq SINE Alu 1 284 -29 23 0 0 0 chrX 65409173 65409196 -111564944 + GC_rich Low_complexity Low_complexity 1 23 0 2071 116 0 35 chrX 65409271 65409414 -111564726 + AluSx SINE Alu 1 148 -164 2300 96 0 0 chrX 65409414 65409706 -111564434 + AluSx SINE Alu 1 292 -20 2071 116 0 35 chrX 65409706 65409873 -111564267 + AluSx SINE Alu 148 300 -12 1452 147 9 0 chrX 65409902 65410126 -111564014 + AluSg/x SINE Alu 86 311 -1 2191 110 3 0 chrX 65410603 65410894 -111563246 - AluSx SINE Alu -20 292 1 2058 135 0 19 chrX 65411181 65411499 -111562641 - AluSx SINE Alu 0 312 1 703 278 5 29 chrX 65411499 65411708 -111562432 - L1ME3A LINE L1 -60 6110 5907 2093 142 0 10 chrX 65411708 65412018 -111562122 + AluSx SINE Alu 1 307 -5 1405 199 11 4 chrX 65412054 65412316 -111561824 - AluJo SINE Alu -7 305 42 22 35 0 0 chrX 65412529 65412558 -111561582 + AT_rich Low_complexity Low_complexity 1 29 0 537 96 217 0 chrX 65412633 65412716 -111561424 - AluS SINE Alu -211 102 2 360 264 63 38 chrX 65412810 65412969 -111561171 + L2 LINE L2 3150 3312 -1 2257 119 0 3 chrX 65413176 65413486 -111560654 + AluSx SINE Alu 1 309 -3 30319 51 5 1 chrX 65413514 65417245 -111556895 + L1P LINE L1 9 3755 -2391 1234 34 0 7 chrX 65417253 65417399 -111556741 + L1PA4 LINE L1 6006 6150 -5 1866 131 19 38 chrX 65417555 65417869 -111556271 + AluJb SINE Alu 4 311 -1 2368 100 0 0 chrX 65418233 65418543 -111555597 - AluSx SINE Alu -2 310 1 1756 158 11 7 chrX 65418686 65418964 -111555176 - AluJb SINE Alu -20 292 14 1859 145 0 45 chrX 65419098 65419408 -111554732 + AluJb SINE Alu 1 296 -16 1819 174 3 3 chrX 65420233 65420527 -111553613 - AluJb SINE Alu -18 294 1 238 300 49 61 chrX 65420547 65420639 -111553501 - L1ME3A LINE L1 -349 5772 5680 2051 94 0 109 chrX 65420639 65420970 -111553170 - AluSp SINE Alu -18 295 1 238 300 49 61 chrX 65420970 65421140 -111553000 - L1ME3A LINE L1 -441 5680 5513 2163 116 0 26 chrX 65421141 65421281 -111552859 + AluSq SINE Alu 1 143 -170 2356 91 0 3 chrX 65421281 65421577 -111552563 + AluSg SINE Alu 1 295 -15 2163 116 0 26 chrX 65421577 65421747 -111552393 + AluSq SINE Alu 143 303 -10 2249 85 0 4 chrX 65421764 65422066 -111552074 - AluY SINE Alu 0 301 1 263 234 111 58 chrX 65422128 65422299 -111551841 - L1ME3A LINE L1 -2337 5471 5292 2357 97 0 0 chrX 65422312 65422610 -111551530 - AluSg SINE Alu -12 298 1 1725 179 0 10 chrX 65422615 65422916 -111551224 - AluJo SINE Alu -14 298 1 2134 110 13 3 chrX 65423050 65423350 -111550790 + AluSx SINE Alu 3 305 -7 1010 166 0 0 chrX 65423479 65423636 -111550504 + FRAM SINE Alu 1 154 -22 877 94 0 0 chrX 65423692 65423798 -111550342 - U6 snRNA snRNA 0 107 2 290 79 0 0 chrX 65423850 65423888 -111550252 - 5S rRNA rRNA -83 38 1 1799 153 27 13 chrX 65424167 65424467 -111549673 - AluJo SINE Alu -8 304 1 6873 107 11 47 chrX 65424547 65424984 -111549156 - L1MA1 LINE L1 0 6302 5851 2015 127 3 3 chrX 65424984 65425268 -111548872 + AluSx SINE Alu 1 284 -28 6873 107 11 47 chrX 65425268 65425836 -111548304 - L1MA1 LINE L1 -451 5851 5349 2461 51 0 17 chrX 65425836 65426130 -111548010 + AluY SINE Alu 9 297 -14 6873 107 11 47 chrX 65426130 65426454 -111547686 - L1MA1 LINE L1 -953 5349 5015 2055 124 4 0 chrX 65426454 65426729 -111547411 + AluSx SINE Alu 1 276 -36 249 152 0 0 chrX 65426748 65426794 -111547346 + LTR66 LTR ERVL 394 439 -171 232 133 0 0 chrX 65426786 65426831 -111547309 - LTR66 LTR ERVL -171 439 395 * 225 137 27 68 chrX 65426833 65426906 -111547234 - L1MCa LINE L1 -4362 2064 1995 3455 158 17 0 chrX 65426930 65427518 -111546622 - L1MA1 LINE L1 -1126 5020 4423 947 149 0 7 chrX 65427520 65427661 -111546479 + MER75 DNA T2_type 1 140 -374 261 150 0 0 chrX 65427698 65427738 -111546402 - MER75 DNA T2_type -333 181 142 2421 113 28 0 chrX 65427749 65428112 -111546028 + MER75 DNA T2_type 140 512 -2 2133 95 33 13 chrX 65428235 65428539 -111545601 - AluSg SINE Alu 0 310 1 1137 109 29 17 chrX 65428608 65428782 -111545358 - MER30 DNA MER1_type -54 176 1 2023 145 3 3 chrX 65429195 65429506 -111544634 + AluJb SINE Alu 1 311 -1 2326 72 0 0 chrX 65429771 65430124 -111544016 + AluY SINE Alu 1 311 0 2149 96 18 0 chrX 65430420 65430750 -111543390 - AluSq SINE Alu 0 335 1 1636 194 4 0 chrX 65430756 65431035 -111543105 - AluJo SINE Alu -20 292 13 361 179 0 0 chrX 65431332 65431388 -111542752 + Alu SINE Alu 238 293 -9 788 194 0 0 chrX 65431485 65431614 -111542526 + FLAM_A SINE Alu 8 136 -6 1913 141 7 3 chrX 65432502 65432799 -111541341 - AluSx SINE Alu -9 303 6 1756 138 0 4 chrX 65432846 65433099 -111541041 + AluSx SINE Alu 39 290 -22 2305 107 3 0 chrX 65433348 65433656 -111540484 + AluSg SINE Alu 1 309 -1 24 0 0 0 chrX 65434809 65434833 -111539307 + AT_rich Low_complexity Low_complexity 1 24 0 429 294 68 28 chrX 65435133 65435310 -111538830 + MIR3 SINE MIR 15 198 -10 3074 106 27 0 chrX 65435512 65435926 -111538214 - MSTA LTR MaLR -2 426 2 2046 119 7 7 chrX 65435947 65436242 -111537898 - AluSx SINE Alu -17 295 1 349 287 28 19 chrX 65436320 65436428 -111537712 - MIR3 SINE MIR -13 195 87 1541 107 65 0 chrX 65436538 65436754 -111537386 - MER30 DNA MER1_type 0 230 1 2030 158 57 47 chrX 65436915 65436980 -111537160 - MLT2A2 LTR ERVL 0 554 491 2129 109 10 13 chrX 65436980 65437283 -111536857 + AluSx SINE Alu 1 302 -10 2030 158 57 47 chrX 65437283 65437774 -111536366 - MLT2A2 LTR ERVL -63 491 1 5433 101 123 13 chrX 65437780 65438807 -111535333 + L1P3 LINE L1 1 2162 -4299 3876 39 0 0 chrX 65438807 65439242 -111534898 + L1PA7 LINE L1 5718 6152 -2 567 83 12 0 chrX 65439389 65439473 -111534667 + L1MB2 LINE L1 5401 5485 -698 997 92 15 0 chrX 65439474 65439605 -111534535 + FRAM SINE Alu 19 151 -25 4384 119 32 30 chrX 65439605 65440241 -111533899 + L1MB2 LINE L1 5475 6114 -57 980 206 6 6 chrX 65440241 65440406 -111533734 + FAM SINE Alu 1 165 -10 4384 119 32 30 chrX 65440406 65440459 -111533681 + L1MB2 LINE L1 6114 6165 -6 6930 78 6 0 chrX 65440850 65441725 -111532415 + MER41C-int LTR ERV1 5516 6395 -1361 4341 68 22 0 chrX 65441716 65442262 -111531878 + MER41C-int LTR ERV1 7199 7756 0 * 2078 81 0 0 chrX 65442262 65442523 -111531617 + MER41C LTR ERV1 1 261 -293 2117 121 0 0 chrX 65442524 65442805 -111531335 + AluSx SINE Alu 3 283 -29 438 220 0 0 chrX 65442826 65442926 -111531214 + (TA)n Simple_repeat Simple_repeat 1 100 0 1524 138 115 0 chrX 65442935 65443188 -111530952 + MER41C LTR ERV1 273 554 0 224 323 195 22 chrX 65443257 65443483 -111530657 + L2 LINE L2 2992 3256 -16 2340 107 0 3 chrX 65443494 65443804 -111530336 - AluSg SINE Alu -1 309 1 2354 94 16 0 chrX 65444186 65444493 -111529647 - AluSx SINE Alu 0 312 1 300 221 173 10 chrX 65444641 65444745 -111529395 - MIR SINE MIR -108 154 34 27 0 0 0 chrX 65444927 65444954 -111529186 + AT_rich Low_complexity Low_complexity 1 27 0 1884 155 7 23 chrX 65444979 65445289 -111528851 + AluJo SINE Alu 1 305 -7 3645 242 81 36 chrX 65445294 65445799 -111528341 + L1M4 LINE L1 23 504 -6141 2189 99 10 3 chrX 65445799 65446092 -111528048 + AluSq SINE Alu 1 295 -18 3645 242 81 36 chrX 65446092 65446930 -111527210 + L1M4 LINE L1 504 1821 -4824 2138 164 12 26 chrX 65446943 65447085 -111527055 + L1PB2 LINE L1 3371 3513 -2633 2451 57 20 7 chrX 65447085 65447385 -111526755 + AluY SINE Alu 1 304 -7 2138 164 12 26 chrX 65447385 65447668 -111526472 + L1PB2 LINE L1 3513 3790 -2356 2124 97 0 85 chrX 65447668 65447999 -111526141 + AluSg SINE Alu 1 303 -7 1425 162 21 111 chrX 65448004 65448140 -111526000 + AluYb8 SINE Alu 1 148 -170 2322 72 0 20 chrX 65448140 65448446 -111525694 + AluY SINE Alu 1 300 -11 1425 162 21 111 chrX 65448446 65448642 -111525498 + AluYb8 SINE Alu 148 303 -15 10608 104 1 0 chrX 65448643 65450909 -111523231 + L1PA4 LINE L1 3889 6153 -2 4146 144 29 16 chrX 65450909 65451306 -111522834 + L1PB2 LINE L1 4411 4802 -1349 2080 126 10 0 chrX 65451306 65451600 -111522540 + AluSx SINE Alu 2 298 -14 4146 144 29 16 chrX 65451600 65452606 -111521534 + L1PB2 LINE L1 4802 5830 -321 1936 170 3 0 chrX 65452615 65452926 -111521214 + AluJb SINE Alu 1 312 0 2326 96 3 6 chrX 65452932 65453401 -111520739 + AluSp SINE Alu 1 468 0 2323 106 9 3 chrX 65453409 65453729 -111520411 + L1PB1 LINE L1 5829 6150 -1 1646 154 101 0 chrX 65453837 65454104 -111520036 - AluJo SINE Alu -18 294 1 2161 114 0 229 chrX 65454104 65454199 -111519941 + L1MA4A LINE L1 5513 5628 -675 1971 147 7 7 chrX 65454199 65454492 -111519648 + AluJb SINE Alu 1 293 -19 2161 114 0 229 chrX 65454492 65454516 -111519624 + L1MA4A LINE L1 5628 5656 -647 2034 135 10 7 chrX 65454516 65454820 -111519320 + AluSx SINE Alu 1 305 -7 2161 114 0 229 chrX 65454820 65454904 -111519236 + L1MA4A LINE L1 5656 5758 -545 2456 81 3 0 chrX 65454904 65455214 -111518926 + AluSp SINE Alu 1 311 -2 2161 114 0 229 chrX 65455214 65455398 -111518742 + L1MA4A LINE L1 5758 5982 -321 1580 115 18 4 chrX 65455398 65455624 -111518516 + AluSx SINE Alu 3 231 -81 2161 114 0 229 chrX 65455624 65456213 -111517927 + L1MA4A LINE L1 5982 6034 -269 2198 118 23 0 chrX 65455846 65456150 -111517990 + AluSx SINE Alu 2 312 0 1537 199 0 68 chrX 65456150 65456339 -111517801 + L1PB4 LINE L1 5955 6155 -1 * 4237 215 67 66 chrX 65456332 65457026 -111517114 + L1M4c LINE L1 1144 1836 -4546 2343 90 3 3 chrX 65457026 65457325 -111516815 + AluSp SINE Alu 1 299 -14 4237 215 67 66 chrX 65457325 65457756 -111516384 + L1M4c LINE L1 1836 2265 -4117 2018 146 0 0 chrX 65457756 65458051 -111516089 + AluSx SINE Alu 1 295 -17 4237 215 67 66 chrX 65458051 65458827 -111515313 + L1M4c LINE L1 2265 3047 -3335 2120 104 0 4 chrX 65458827 65459107 -111515033 + AluSx SINE Alu 19 297 -15 269 207 17 0 chrX 65459107 65459165 -111514975 + L1M4c LINE L1 3277 3335 -3047 * 830 172 92 73 chrX 65459161 65459191 -111514949 + L1M4c LINE L1 3994 4022 -2360 2019 134 0 21 chrX 65459191 65459509 -111514631 + AluSx SINE Alu 1 312 0 830 172 92 73 chrX 65459509 65459738 -111514402 + L1M4c LINE L1 4022 4259 -2123 7343 52 7 26 chrX 65459740 65460523 -111513617 + L1PA7 LINE L1 4741 5501 -653 2433 65 3 0 chrX 65460523 65460814 -111513326 - AluY SINE Alu -6 305 14 7343 52 7 26 chrX 65460814 65461456 -111512684 + L1PA7 LINE L1 5501 6154 0 2325 63 31 0 chrX 65462266 65462552 -111511588 - AluY SINE Alu -16 295 1 1453 155 47 71 chrX 65462574 65462685 -111511455 + AluJo SINE Alu 1 113 -189 2176 99 0 11 chrX 65462685 65462996 -111511144 - AluSx SINE Alu 0 308 1 1453 155 47 71 chrX 65462996 65463180 -111510960 + AluJo SINE Alu 113 290 -12 1605 133 53 59 chrX 65463180 65463517 -111510623 - L1MC2 LINE L1 -131 6213 5879 1168 150 0 11 chrX 65463524 65463711 -111510429 - AluJb SINE Alu -125 187 3 1512 160 50 3 chrX 65463714 65463996 -111510144 - L1MC2 LINE L1 -452 5892 5598 749 104 9 0 chrX 65463996 65464102 -111510038 + AluSq/x SINE Alu 1 107 -206 240 192 221 58 chrX 65464118 65464222 -111509918 + L1ME3A LINE L1 6027 6147 -23 451 178 69 0 chrX 65464242 65464343 -111509797 + L1MB7 LINE L1 6069 6176 -8 515 145 12 0 chrX 65464362 65464445 -111509695 + AluS SINE Alu 1 84 -229 233 295 16 0 chrX 65465256 65465317 -111508823 + L2 LINE L2 3229 3290 -23 2193 114 0 10 chrX 65465680 65465987 -111508153 - AluY SINE Alu -7 304 1 1979 157 0 0 chrX 65466031 65466330 -111507810 - AluJb SINE Alu -4 308 10 2389 84 3 0 chrX 65466812 65467110 -111507030 + AluSp SINE Alu 1 299 -14 2134 129 30 0 chrX 65467240 65467543 -111506597 - AluSx SINE Alu 0 312 1 2178 113 17 0 chrX 65469574 65469866 -111504274 + AluSx SINE Alu 1 297 -15 369 0 0 0 chrX 65470292 65470333 -111503807 + (TG)n Simple_repeat Simple_repeat 2 42 0 540 275 72 19 chrX 65472057 65472235 -111501905 - MIR3 SINE MIR -13 195 7 1993 124 0 52 chrX 65472301 65472608 -111501532 - AluSx SINE Alu -15 297 7 1728 183 10 7 chrX 65472687 65472988 -111501152 - AluJb SINE Alu -10 302 1 2230 108 0 0 chrX 65473463 65473760 -111500380 + AluSx SINE Alu 1 297 -15 2366 99 0 0 chrX 65473856 65474160 -111499980 + AluSx SINE Alu 1 304 -8 315 0 0 0 chrX 65474160 65474195 -111499945 + (TA)n Simple_repeat Simple_repeat 2 36 0 203 200 0 0 chrX 65474751 65474786 -111499354 + T-rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chrX 65476108 65476137 -111498003 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 65477355 65477390 -111496750 + AT_rich Low_complexity Low_complexity 1 35 0 237 346 71 0 chrX 65478279 65478406 -111495734 - MIR3 SINE MIR -39 169 34 2126 97 31 0 chrX 65479838 65480127 -111494013 + AluSx SINE Alu 1 298 -14 1718 206 134 18 chrX 65480280 65480721 -111493419 + L1MD2 LINE L1 5855 6346 -13 2014 116 3 51 chrX 65480924 65481235 -111492905 + AluSx SINE Alu 1 296 -16 2143 91 0 7 chrX 65481490 65481764 -111492376 - AluSx SINE Alu -20 292 21 318 174 116 0 chrX 65482714 65482783 -111491357 + L1 LINE L1 3222 3298 -2848 1106 235 90 6 chrX 65482944 65483255 -111490885 + MER46C DNA MER2_type 2 338 0 874 156 0 0 chrX 65483412 65483534 -111490606 + FLAM_C SINE Alu 2 123 -20 24 0 0 0 chrX 65483534 65483558 -111490582 + AT_rich Low_complexity Low_complexity 1 24 0 48 67 0 0 chrX 65483785 65483875 -111490265 + AT_rich Low_complexity Low_complexity 1 90 0 181 246 0 72 chrX 65485751 65485820 -111488320 + L2 LINE L2 95 158 -3156 7255 113 7 10 chrX 65488026 65489345 -111484795 + L1MA1 LINE L1 4981 6298 -4 2213 111 3 0 chrX 65489429 65489736 -111484404 + AluSx SINE Alu 1 308 -4 2371 93 3 7 chrX 65489865 65490175 -111483965 + AluSx SINE Alu 1 309 -3 275 293 149 34 chrX 65490273 65490481 -111483659 - MIR SINE MIR -2 260 29 2194 98 0 3 chrX 65490950 65491235 -111482905 - AluSq SINE Alu -29 284 1 308 357 101 45 chrX 65491454 65491762 -111482378 + L2 LINE L2 2898 3222 -50 437 239 169 14 chrX 65492699 65492841 -111481299 + MER5B DNA MER1_type 1 164 -14 1724 171 29 7 chrX 65493083 65493364 -111480776 - AluJb SINE Alu -25 287 1 738 232 0 13 chrX 65493450 65493605 -111480535 - FRAM SINE Alu -4 172 20 247 281 103 40 chrX 65493881 65494183 -111479957 + L1ME4a LINE L1 5669 5989 -132 34 24 0 0 chrX 65494348 65494389 -111479751 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chrX 65495470 65495507 -111478633 + AT_rich Low_complexity Low_complexity 1 37 0 378 0 0 0 chrX 65495843 65495885 -111478255 + (TG)n Simple_repeat Simple_repeat 2 43 0 1988 147 0 0 chrX 65495890 65496175 -111477965 - AluJb SINE Alu -23 289 5 316 324 169 0 chrX 65496302 65496438 -111477702 - MER5A DNA MER1_type -1 188 30 452 266 173 28 chrX 65498113 65498327 -111475813 + MIR SINE MIR 8 252 -10 354 309 125 6 chrX 65499784 65499952 -111474188 - MER5A DNA MER1_type 0 189 2 317 184 78 87 chrX 65501903 65502109 -111472031 + L1MC1 LINE L1 2995 3198 -2948 1718 178 26 3 chrX 65502115 65502418 -111471722 - AluJb SINE Alu -2 310 1 1822 223 47 4 chrX 65502536 65503029 -111471111 + L1MC1 LINE L1 3244 3757 -2389 5586 139 23 68 chrX 65503031 65504209 -111469931 + L1MC1 LINE L1 5192 6318 -15 2337 107 0 0 chrX 65504221 65504519 -111469621 + AluSq SINE Alu 1 298 -15 1552 211 58 72 chrX 65504529 65504775 -111469365 + L1MB7 LINE L1 3961 4209 -1937 2104 135 0 0 chrX 65504775 65505078 -111469062 + AluSx SINE Alu 1 303 -9 1552 211 58 72 chrX 65505078 65505152 -111468988 + L1MB7 LINE L1 4209 4283 -1863 2164 99 7 0 chrX 65505152 65505456 -111468684 + AluSx SINE Alu 1 306 0 1552 211 58 72 chrX 65505456 65505717 -111468423 + L1MB7 LINE L1 4283 4536 -1610 1906 166 0 0 chrX 65505722 65506018 -111468122 - AluJo SINE Alu -16 296 1 320 135 0 0 chrX 65506040 65506092 -111468048 - L1MB8 LINE L1 -16 6162 6111 5669 163 43 203 chrX 65506141 65508482 -111465658 - MER52A LTR ERV1 0 1755 1 449 226 0 0 chrX 65508483 65508585 -111465555 + L1MB7 LINE L1 4556 4657 -1489 741 176 0 15 chrX 65508585 65508716 -111465424 + AluJb SINE Alu 3 131 -181 274 212 71 0 chrX 65508720 65508805 -111465335 + L1MB7 LINE L1 4643 4733 -1413 4069 180 46 40 chrX 65508877 65508973 -111465167 + L1MB7 LINE L1 4742 4836 -1348 1964 144 10 7 chrX 65508973 65509271 -111464869 - AluJo SINE Alu -9 303 5 4069 180 46 40 chrX 65509271 65509615 -111464525 + L1MB7 LINE L1 4836 5176 -1008 1606 182 14 20 chrX 65509615 65509911 -111464229 + AluJo SINE Alu 3 296 -16 4069 180 46 40 chrX 65509911 65509956 -111464184 + L1MB7 LINE L1 5176 5219 -965 2194 160 40 0 chrX 65509956 65510382 -111463758 + L1MB3 LINE L1 5739 6181 -2 4069 180 46 40 chrX 65510382 65510454 -111463686 + L1MB7 LINE L1 5219 5289 -895 1811 164 7 7 chrX 65510454 65510747 -111463393 + AluJb SINE Alu 1 293 -19 4069 180 46 40 chrX 65510747 65511370 -111462770 + L1MB7 LINE L1 5289 5955 -229 2122 133 7 3 chrX 65511370 65511679 -111462461 + AluSx SINE Alu 1 310 -2 4069 180 46 40 chrX 65511679 65511901 -111462239 + L1MB7 LINE L1 5955 6174 -10 1743 139 0 87 chrX 65511916 65512225 -111461915 + AluJo SINE Alu 1 282 -30 1037 131 34 15 chrX 65512239 65512445 -111461695 + L1MD2 LINE L1 5401 5610 -632 714 172 0 0 chrX 65512445 65512571 -111461569 + L1PA14 LINE L1 6017 6144 -17 260 0 0 54 chrX 65512575 65512612 -111461528 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 612 250 0 0 chrX 65512658 65512786 -111461354 + AluSq/x SINE Alu 3 130 -183 2681 208 52 43 chrX 65512815 65513008 -111461132 + L1MD2 LINE L1 5593 5783 -576 2453 86 0 0 chrX 65513008 65513309 -111460831 + AluSx SINE Alu 1 301 -11 2681 208 52 43 chrX 65513309 65513331 -111460809 + L1MD2 LINE L1 5783 5803 -556 1269 133 33 54 chrX 65513331 65513572 -111460568 - MER46A DNA MER2_type 0 236 1 2681 208 52 43 chrX 65513572 65513926 -111460214 + L1MD2 LINE L1 5803 6174 -185 297 0 0 0 chrX 65513926 65513959 -111460181 + (CA)n Simple_repeat Simple_repeat 2 34 0 2681 208 52 43 chrX 65513959 65514131 -111460009 + L1MD2 LINE L1 6174 6343 -16 1409 203 13 56 chrX 65514153 65514547 -111459593 + L1M4 LINE L1 3951 4327 -1819 2064 138 0 0 chrX 65514547 65514837 -111459303 + AluSx SINE Alu 1 290 -22 543 293 91 41 chrX 65514855 65515319 -111458821 - L1ME LINE L1 -5532 538 52 1716 247 86 34 chrX 65515405 65515537 -111458603 + L1MC4a LINE L1 6336 6460 -1348 2127 118 3 16 chrX 65515537 65515850 -111458290 + AluSx SINE Alu 1 309 -3 1716 247 86 34 chrX 65515850 65515863 -111458277 + L1MC4a LINE L1 6460 6471 -1337 2333 117 0 0 chrX 65515863 65516172 -111457968 + AluSc SINE Alu 1 309 0 1716 247 86 34 chrX 65516172 65516795 -111457345 + L1MC4a LINE L1 6471 7145 -663 1814 246 13 24 chrX 65516954 65517410 -111456730 + MLT1E2 LTR MaLR 149 599 -27 1233 228 100 33 chrX 65517455 65517906 -111456234 + L1MC4 LINE L1 7269 7749 -293 803 282 30 55 chrX 65517921 65518163 -111455977 - L1MDa LINE L1 -4512 2028 1781 1919 147 51 9 chrX 65518163 65518497 -111455643 + MER7A DNA MER2_type 1 346 0 803 282 30 55 chrX 65518497 65518882 -111455258 - L1MDa LINE L1 -4759 1781 1509 1549 188 13 54 chrX 65518984 65519298 -111454842 + AluJo SINE Alu 3 303 -9 288 0 0 0 chrX 65519298 65519330 -111454810 + (TA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chrX 65519377 65519398 -111454742 + AT_rich Low_complexity Low_complexity 1 21 0 1839 150 28 0 chrX 65519453 65519740 -111454400 + AluSx SINE Alu 5 299 -13 933 159 13 6 chrX 65520446 65520603 -111453537 + AluJb SINE Alu 146 303 -9 2499 59 0 10 chrX 65521349 65521654 -111452486 - AluY SINE Alu -9 302 1 592 231 0 8 chrX 65521753 65521883 -111452257 - FRAM SINE Alu -17 159 31 789 180 6 43 chrX 65521918 65522079 -111452061 - AluJo SINE Alu -157 155 1 1007 187 13 7 chrX 65522090 65522413 -111451727 + L1ME4a LINE L1 5152 5474 -700 20583 84 6 4 chrX 65522430 65526256 -111447884 + L1PA7 LINE L1 2254 6086 -68 291 200 0 0 chrX 65526273 65526333 -111447807 + L1ME4a LINE L1 5609 5668 -516 1888 126 14 0 chrX 65526979 65527280 -111446860 + AluSx SINE Alu 1 305 0 770 172 0 15 chrX 65527378 65527512 -111446628 - FLAM_C SINE Alu -1 132 1 673 259 117 35 chrX 65527519 65527836 -111446304 - MARNA DNA Mariner -228 358 16 7353 42 1 1 chrX 65528132 65529612 -111444528 + L1PA5 LINE L1 4671 6150 -4 6735 70 9 1 chrX 65529910 65530822 -111443318 + L1PA7 LINE L1 5236 6154 0 839 142 0 22 chrX 65531079 65531213 -111442927 + FLAM_C SINE Alu 3 133 0 2316 106 0 6 chrX 65531730 65532041 -111442099 - AluSg SINE Alu -1 309 1 305 269 107 10 chrX 65532118 65532315 -111441825 + L1ME4a LINE L1 5724 5939 -182 2080 130 7 7 chrX 65532634 65532935 -111441205 + AluSx SINE Alu 1 301 -11 8415 199 32 12 chrX 65533135 65534403 -111439737 + L1MA2 LINE L1 2300 3541 -2605 2848 160 176 105 chrX 65534403 65535355 -111438785 + LTR28 LTR ERV1 1 1020 0 8415 199 32 12 chrX 65535355 65536568 -111437572 + L1MA2 LINE L1 3541 4920 -1226 1915 144 0 43 chrX 65536568 65536894 -111437246 + AluSx SINE Alu 1 312 0 2134 106 0 17 chrX 65536902 65537189 -111436951 + AluSg SINE Alu 1 283 -23 441 0 0 0 chrX 65537189 65537238 -111436902 + (CATA)n Simple_repeat Simple_repeat 2 50 0 1094 156 0 17 chrX 65537242 65537415 -111436725 + AluSg/x SINE Alu 134 303 -9 333 164 0 0 chrX 65537425 65537480 -111436660 + L1MA2 LINE L1 4908 4962 -1184 2220 109 0 13 chrX 65537481 65537794 -111436346 + AluSx SINE Alu 1 309 -3 2063 113 65 0 chrX 65537805 65538096 -111436044 + AluSx SINE Alu 1 310 -2 379 123 0 0 chrX 65538098 65538155 -111435985 + L1MA2 LINE L1 4906 4962 -1184 1019 118 0 0 chrX 65538156 65538291 -111435849 + AluSq/x SINE Alu 1 135 -177 2304 60 14 0 chrX 65538291 65538631 -111435509 + AluY SINE Alu 1 344 0 1385 160 9 96 chrX 65538642 65538793 -111435347 + AluSq SINE Alu 4 112 -201 305 0 50 0 chrX 65538793 65538833 -111435307 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1385 160 9 96 chrX 65538833 65539013 -111435127 + AluSq SINE Alu 112 306 -7 4683 150 22 8 chrX 65539014 65540127 -111434013 + L1MA2 LINE L1 4955 6083 -221 2236 99 0 0 chrX 65540127 65540420 -111433720 + AluSg SINE Alu 1 293 -17 234 89 18 71 chrX 65540430 65540486 -111433654 + L1MA2 LINE L1 6072 6124 -180 1049 117 11 6 chrX 65540547 65540727 -111433413 + L1MA2 LINE L1 6115 6295 -9 1884 181 0 0 chrX 65541033 65541337 -111432803 + AluJb SINE Alu 1 304 -8 2083 118 3 0 chrX 65541539 65541826 -111432314 - AluSx SINE Alu -7 305 18 2448 116 3 5 chrX 65541972 65542342 -111431798 - L1PB1 LINE L1 -1 6150 5782 189 180 0 0 chrX 65542347 65542397 -111431743 + (TA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chrX 65542421 65542444 -111431696 + AT_rich Low_complexity Low_complexity 1 23 0 2260 122 0 10 chrX 65542748 65543059 -111431081 + AluSq SINE Alu 1 308 -5 687 249 14 55 chrX 65543104 65543506 -111430634 + L1MCa LINE L1 180 624 -5940 917 209 64 57 chrX 65543517 65543814 -111430326 + L1MCa LINE L1 501 799 -5246 809 150 0 15 chrX 65543816 65543949 -111430191 + AluJo/FLAM SINE Alu 1 131 -181 1169 215 76 5 chrX 65543952 65544020 -111430120 + AluJb SINE Alu 50 112 -200 261 0 0 0 chrX 65544020 65544049 -111430091 + (CA)n Simple_repeat Simple_repeat 2 30 0 1169 215 76 5 chrX 65544049 65544203 -111429937 + AluJb SINE Alu 112 288 -24 21 0 0 0 chrX 65544203 65544224 -111429916 + AT_rich Low_complexity Low_complexity 1 21 0 1014 198 42 110 chrX 65544267 65544443 -111429697 - L1M4 LINE L1 -814 5332 5146 2226 122 0 0 chrX 65544443 65544746 -111429394 - AluSx SINE Alu -9 303 1 1014 198 42 110 chrX 65544746 65544998 -111429142 - L1M4 LINE L1 -1000 5146 4933 545 209 29 0 chrX 65545003 65545142 -111428998 + L1MB4 LINE L1 6009 6151 -29 3704 265 61 68 chrX 65545502 65547018 -111427122 + L1M2 LINE L1 13 1515 -5334 1824 155 25 3 chrX 65547018 65547302 -111426838 + AluJo SINE Alu 1 290 -22 3704 265 61 68 chrX 65547302 65547670 -111426470 + L1M2 LINE L1 1515 1884 -4965 1754 145 3 31 chrX 65547690 65548007 -111426133 + AluSx SINE Alu 1 309 0 1056 156 30 0 chrX 65548008 65548175 -111425965 + AluJb SINE Alu 135 306 -6 4155 99 22 56 chrX 65548175 65548904 -111425236 + L1MA3 LINE L1 5593 6296 -9 21 0 0 0 chrX 65548904 65548925 -111425215 + AT_rich Low_complexity Low_complexity 1 21 0 744 128 0 0 chrX 65548926 65549043 -111425097 + L1PB4 LINE L1 5432 5548 -752 * 942 224 16 20 chrX 65549040 65549295 -111424845 + L1PB4 LINE L1 5903 6156 0 2378 52 0 10 chrX 65549794 65550083 -111424057 - AluSc SINE Alu -23 286 1 2060 132 7 0 chrX 65550226 65550513 -111423627 + AluSx SINE Alu 1 289 -23 259 297 144 0 chrX 65550568 65550686 -111423454 - L2 LINE L2 0 3313 3179 346 264 40 16 chrX 65551159 65551284 -111422856 + L1MC4a LINE L1 5811 5938 -1870 21 71 0 0 chrX 65551486 65551528 -111422612 + AT_rich Low_complexity Low_complexity 1 42 0 2326 119 0 0 chrX 65551559 65551871 -111422269 - AluSx SINE Alu 0 312 1 2605 142 41 29 chrX 65551948 65552461 -111421679 - L1PB4 LINE L1 -3 6153 5635 3974 153 25 9 chrX 65552619 65553310 -111420830 + MER44D DNA MER2_type 1 702 -3 16718 115 22 23 chrX 65553505 65559774 -111414366 - L1PA8 LINE L1 -7 6480 13 2258 122 0 0 chrX 65559775 65560070 -111414070 - AluSx SINE Alu -17 295 1 286 238 168 0 chrX 65560218 65560319 -111413821 - MIR SINE MIR -111 151 34 2014 93 0 0 chrX 65560658 65560916 -111413224 - AluSg SINE Alu -14 296 39 2390 80 0 3 chrX 65561091 65561391 -111412749 + AluSq SINE Alu 1 299 -14 2415 71 0 7 chrX 65561459 65561753 -111412387 + AluSx SINE Alu 2 293 -19 403 248 38 0 chrX 65561789 65561894 -111412246 - L1ME4a LINE L1 -219 5902 5794 250 177 57 0 chrX 65561863 65561922 -111412218 - L1P3 LINE L1 -330 5824 5763 * 22 0 0 0 chrX 65561999 65562021 -111412119 + AT_rich Low_complexity Low_complexity 1 22 0 2097 138 0 0 chrX 65562416 65562721 -111411419 + AluSx SINE Alu 1 305 -7 624 171 76 25 chrX 65562762 65562920 -111411220 - MER33 DNA MER1_type 0 324 159 493 161 70 3 chrX 65562917 65563050 -111411090 - MER46A DNA MER2_type -49 187 2 * 780 194 30 6 chrX 65563050 65563213 -111410927 - MER33 DNA MER1_type -256 68 1 2419 49 16 29 chrX 65563305 65563613 -111410527 + L1PA2 LINE L1 5851 6154 -1 1758 173 3 0 chrX 65564240 65564523 -111409617 + AluJb SINE Alu 1 284 -28 2170 194 19 7 chrX 65564535 65564964 -111409176 - L1MA9 LINE L1 -50 6262 5829 2488 65 0 10 chrX 65565005 65565313 -111408827 + AluY SINE Alu 1 305 -6 240 261 92 62 chrX 65565977 65566107 -111408033 + L1MC5 LINE L1 7749 7882 -79 2253 113 3 0 chrX 65566126 65566428 -111407712 - AluSq SINE Alu -10 303 1 180 0 0 0 chrX 65566458 65566478 -111407662 + (A)n Simple_repeat Simple_repeat 1 20 0 2323 62 0 0 chrX 65566479 65566753 -111407387 - AluSg SINE Alu -36 274 1 1945 146 0 0 chrX 65566818 65567106 -111407034 + AluJb SINE Alu 3 290 -22 1965 109 61 3 chrX 65567886 65568180 -111405960 + AluSq SINE Alu 1 311 -2 328 283 81 10 chrX 65568559 65568658 -111405482 + MIR SINE MIR 30 135 -73 7519 40 8 32 chrX 65568675 65570256 -111403884 - SVA Other Other -799 1386 1 203 232 87 14 chrX 65570284 65570353 -111403787 + MIR3 SINE MIR 128 201 -7 2196 114 3 0 chrX 65570382 65570679 -111403461 - AluSx SINE Alu -14 298 1 797 187 129 0 chrX 65572035 65572174 -111401966 + FAM SINE Alu 1 157 -18 2197 95 3 35 chrX 65572255 65572570 -111401570 - AluSg SINE Alu -5 305 1 1654 133 72 22 chrX 65572798 65573076 -111401064 + AluJb SINE Alu 1 292 -20 2242 112 3 0 chrX 65573091 65573386 -111400754 - AluSx SINE Alu -16 296 1 1413 204 24 15 chrX 65573387 65573715 -111400425 + L1MC4 LINE L1 7316 7646 -396 2211 89 10 3 chrX 65574080 65574372 -111399768 + AluSg SINE Alu 1 294 -16 982 168 112 0 chrX 65574755 65574951 -111399189 + MER20 DNA MER1_type 2 219 0 2055 89 10 58 chrX 65574997 65575310 -111398830 + AluSx SINE Alu 1 298 -14 986 135 0 0 chrX 65575334 65575467 -111398673 + FLAM_C SINE Alu 1 133 0 2065 97 0 40 chrX 65575472 65575771 -111398369 - AluSc SINE Alu -22 287 1 273 139 0 0 chrX 65575787 65575830 -111398310 + L1MB3 LINE L1 6130 6172 -11 1346 159 5 0 chrX 65575833 65576047 -111398093 - AluJo SINE Alu -13 299 85 231 36 0 0 chrX 65576077 65576105 -111398035 + (A)n Simple_repeat Simple_repeat 1 28 0 2215 109 0 3 chrX 65576457 65576760 -111397380 + AluSc SINE Alu 1 302 -7 1745 200 154 75 chrX 65576769 65576926 -111397214 + L1MC4 LINE L1 7378 7521 -521 2180 109 10 0 chrX 65576926 65577219 -111396921 + AluSq SINE Alu 1 296 -17 1745 200 154 75 chrX 65577219 65577381 -111396759 + L1MC4 LINE L1 7521 7669 -373 2442 61 0 0 chrX 65577381 65577675 -111396465 + AluY SINE Alu 1 294 -17 1745 200 154 75 chrX 65577675 65577701 -111396439 + L1MC4 LINE L1 7669 7692 -350 1395 187 39 14 chrX 65577701 65577868 -111396272 - AluJo SINE Alu -21 291 113 315 0 0 0 chrX 65577868 65577903 -111396237 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1395 187 39 14 chrX 65577903 65578019 -111396121 - AluJo SINE Alu -199 113 1 1745 200 154 75 chrX 65578019 65578275 -111395865 + L1MC4 LINE L1 7692 8029 -13 1716 180 0 13 chrX 65578386 65578692 -111395448 + AluJb SINE Alu 1 302 -10 2113 103 11 0 chrX 65578701 65579021 -111395119 - AluSx SINE Alu 0 323 1 325 254 55 73 chrX 65579205 65579315 -111394825 + L2 LINE L2 3192 3299 -14 992 192 55 59 chrX 65579910 65580073 -111394067 - MER58A DNA MER1_type -2202 218 55 1869 100 0 100 chrX 65580073 65580418 -111393722 + AluSx SINE Alu 13 312 0 992 192 55 59 chrX 65580418 65580473 -111393667 - MER58A DNA MER1_type -2365 55 1 2226 83 24 3 chrX 65580844 65581134 -111393006 + AluSg SINE Alu 1 296 -14 1037 134 0 53 chrX 65581235 65581422 -111392718 + AluJo SINE Alu 122 298 -14 2414 71 0 3 chrX 65581430 65581725 -111392415 + AluSc SINE Alu 1 294 -15 2210 80 0 51 chrX 65581920 65582232 -111391908 - AluY SINE Alu -15 296 1 281 353 77 58 chrX 65582424 65582736 -111391404 + L2 LINE L2 2954 3271 -1 2122 107 16 19 chrX 65583307 65583617 -111390523 - AluSg1 SINE Alu 0 309 1 1738 149 17 10 chrX 65583648 65583937 -111390203 + AluJo SINE Alu 1 291 -21 379 303 78 28 chrX 65583944 65584086 -111390054 - MIR3 SINE MIR -40 168 20 382 128 39 39 chrX 65584095 65584149 -111389991 - Charlie1 DNA MER1_type -1 2760 2704 2379 82 3 7 chrX 65584149 65584455 -111389685 + AluY SINE Alu 1 305 -6 382 128 39 39 chrX 65584455 65584478 -111389662 - Charlie1 DNA MER1_type -56 2705 2683 187 200 222 0 chrX 65584583 65584628 -111389512 - MIR SINE MIR -113 149 95 2393 93 0 13 chrX 65585456 65585769 -111388371 + AluSx SINE Alu 1 309 -3 1102 134 6 0 chrX 65585781 65585941 -111388199 + L1M1 LINE L1 785 948 -6617 2114 119 0 19 chrX 65585941 65586251 -111387889 + AluSx SINE Alu 1 304 -8 1102 134 6 0 chrX 65586251 65586262 -111387878 + L1M1 LINE L1 948 957 -6608 618 221 65 19 chrX 65587096 65587250 -111386890 + MIR SINE MIR 14 174 -88 205 53 79 0 chrX 65588758 65588796 -111385344 + C-rich Low_complexity Low_complexity 2 42 0 544 229 86 0 chrX 65589482 65589622 -111384518 - MIR SINE MIR 0 262 111 219 171 24 0 chrX 65589783 65589824 -111384316 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 324 0 0 0 chrX 65589895 65589931 -111384209 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 318 80 0 chrX 65589979 65590067 -111384073 + MIR3 SINE MIR 113 207 -1 1844 140 7 23 chrX 65590301 65590608 -111383532 - AluJo SINE Alu -10 302 1 3386 107 129 11 chrX 65590894 65591444 -111382696 - MER51A LTR ERV1 -19 615 1 2054 108 0 25 chrX 65591576 65591891 -111382249 - AluSq SINE Alu 0 313 6 1503 159 9 57 chrX 65591904 65592219 -111381921 - AluJo SINE Alu -11 301 2 660 242 0 0 chrX 65592336 65592460 -111381680 + FLAM_C SINE Alu 2 125 -8 2411 78 0 28 chrX 65592492 65592811 -111381329 + AluSq SINE Alu 1 310 -3 1964 132 0 28 chrX 65593114 65593432 -111380708 + AluSx SINE Alu 1 310 0 746 219 13 0 chrX 65593475 65593626 -111380514 + L1MC4a LINE L1 5580 5732 -2076 889 211 9 60 chrX 65593627 65593859 -111380281 + AluJo SINE Alu 1 220 -92 318 234 32 75 chrX 65593915 65594009 -111380131 + L1MC4 LINE L1 6614 6703 -1339 404 232 12 0 chrX 65594015 65594097 -111380043 + L1MC4a LINE L1 5727 5809 -1999 4301 198 51 34 chrX 65594112 65594167 -111379973 + L1MB2 LINE L1 4316 4369 -1931 2314 115 0 6 chrX 65594167 65594481 -111379659 + AluSx SINE Alu 1 312 0 4301 198 51 34 chrX 65594481 65594963 -111379177 + L1MB2 LINE L1 4369 4842 -1458 2073 139 0 19 chrX 65594963 65595280 -111378860 - AluJb SINE Alu -1 311 1 4301 198 51 34 chrX 65595280 65595852 -111378288 + L1MB2 LINE L1 4842 5403 -897 2215 74 13 32 chrX 65595852 65596162 -111377978 + AluY SINE Alu 1 304 -7 4301 198 51 34 chrX 65596162 65596445 -111377695 + L1MB2 LINE L1 5403 5680 -620 2229 117 0 3 chrX 65596445 65596744 -111377396 - AluSx SINE Alu -14 298 1 4301 198 51 34 chrX 65596744 65597161 -111376979 + L1MB2 LINE L1 5680 6089 -211 1876 164 0 16 chrX 65597161 65597473 -111376667 + AluSx SINE Alu 1 307 -5 1922 148 3 3 chrX 65597481 65597772 -111376368 + AluSx SINE Alu 3 293 -19 2423 60 40 0 chrX 65597780 65598079 -111376061 + AluY SINE Alu 1 311 0 4301 198 51 34 chrX 65598079 65598186 -111375954 + L1MB2 LINE L1 6101 6271 -29 233 202 0 67 chrX 65598161 65598250 -111375890 + L1MB4 LINE L1 6097 6179 -1 * 322 271 16 31 chrX 65598259 65598388 -111375752 + L1MC4a LINE L1 5819 5945 -1863 1929 170 105 21 chrX 65598575 65598906 -111375234 + L1MC/D LINE L1 4771 5073 -1271 2157 92 0 0 chrX 65598906 65599177 -111374963 + AluSg SINE Alu 1 271 -39 2265 108 0 0 chrX 65599182 65599487 -111374653 + AluSx SINE Alu 1 305 -7 1929 170 105 21 chrX 65599487 65599921 -111374219 + L1MC/D LINE L1 5076 5611 -733 198 128 0 0 chrX 65599934 65599973 -111374167 + (T)n Simple_repeat Simple_repeat 1 39 0 2376 63 0 16 chrX 65600471 65600812 -111373328 - AluY SINE Alu 0 311 1 449 271 165 21 chrX 65601308 65601559 -111372581 + L1MC4 LINE L1 7608 7822 -220 390 57 0 0 chrX 65601559 65601612 -111372528 + (TG)n Simple_repeat Simple_repeat 2 54 0 449 271 165 21 chrX 65601612 65601736 -111372404 + L1MC4 LINE L1 7822 8037 -5 1041 184 5 10 chrX 65601849 65602045 -111372095 - L1MB3 LINE L1 0 6183 5989 3835 202 69 35 chrX 65602176 65602328 -111371812 - L1MC4a LINE L1 -3 7805 7660 927 213 72 59 chrX 65602328 65602549 -111371591 + MER58A DNA MER1_type 1 224 0 3835 202 69 35 chrX 65602549 65602875 -111371265 - L1MC4a LINE L1 -148 7660 7346 1989 147 0 7 chrX 65602875 65603168 -111370972 - AluJo SINE Alu -21 291 1 3835 202 69 35 chrX 65603168 65603694 -111370446 - L1MC4a LINE L1 -462 7346 6766 29 28 0 0 chrX 65604401 65604437 -111369703 + AT_rich Low_complexity Low_complexity 1 36 0 608 268 140 22 chrX 65604796 65605024 -111369116 + MIR SINE MIR 5 259 -3 1603 204 3 15 chrX 65605402 65605736 -111368404 - L1MB7 LINE L1 -41 6143 5814 330 60 100 0 chrX 65605745 65605795 -111368345 - L1MB2 LINE L1 -2 6169 6115 3546 142 50 0 chrX 65605824 65606444 -111367696 - L1MB2 LINE L1 -35 6136 5486 21 36 0 0 chrX 65607441 65607469 -111366671 + AT_rich Low_complexity Low_complexity 1 28 0 3371 174 32 59 chrX 65607495 65608276 -111365864 - L1MB4 LINE L1 -137 6043 5293 2285 80 0 20 chrX 65608276 65608575 -111365565 - AluY SINE Alu -18 293 1 3371 174 32 59 chrX 65608575 65608652 -111365488 - L1MB4 LINE L1 -887 5293 5215 423 132 0 0 chrX 65608750 65608818 -111365322 + (GGA)n Simple_repeat Simple_repeat 2 69 0 859 167 0 0 chrX 65609000 65609132 -111365008 - FLAM_C SINE Alu -1 132 1 2010 139 0 3 chrX 65609225 65609519 -111364621 - AluSx SINE Alu -19 293 1 329 287 19 19 chrX 65609739 65609847 -111364293 - L1MC5 LINE L1 -45 7916 7809 1362 96 0 0 chrX 65609847 65610024 -111364116 - AluSq SINE Alu 0 313 137 903 227 134 57 chrX 65610025 65610207 -111363933 - L1MC5 LINE L1 -157 7804 7637 2170 117 0 10 chrX 65610207 65610505 -111363635 + AluSq SINE Alu 1 295 -18 903 227 134 57 chrX 65610505 65610828 -111363312 - L1MC5 LINE L1 -324 7637 7260 1001 256 35 3 chrX 65610886 65611202 -111362938 - L1MB4 LINE L1 -1430 4716 4391 2417 115 77 6 chrX 65611205 65611545 -111362595 - THE1B LTR MaLR 0 364 1 463 250 56 6 chrX 65611566 65611726 -111362414 - L1MB4 LINE L1 -1823 4323 4156 226 296 42 0 chrX 65611793 65611864 -111362276 - L1MB4 LINE L1 -2323 3823 3750 330 26 0 0 chrX 65611866 65611905 -111362235 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 1700 192 17 0 chrX 65611905 65612207 -111361933 - AluJo SINE Alu -4 308 2 936 257 78 20 chrX 65612209 65613134 -111361006 - L1MB4 LINE L1 -2659 3487 2315 4145 224 79 38 chrX 65613657 65614153 -111359987 - L1M4 LINE L1 -2986 3658 3184 1776 152 7 20 chrX 65614153 65614455 -111359685 - AluJo SINE Alu -14 298 1 4145 224 79 38 chrX 65614455 65615657 -111358483 - L1M4 LINE L1 -3460 3184 1844 1619 178 24 27 chrX 65615657 65615955 -111358185 + AluJo SINE Alu 2 298 -14 4145 224 79 38 chrX 65615955 65616452 -111357688 - L1M4 LINE L1 -4800 1844 1369 484 315 107 71 chrX 65616470 65616506 -111357634 - L1M4 LINE L1 -5441 1101 1068 865 10 20 0 chrX 65616506 65616608 -111357532 - L1PA6 LINE L1 -5 6149 6046 484 315 107 71 chrX 65616608 65616854 -111357286 - L1M4 LINE L1 -5474 1068 832 2206 111 0 7 chrX 65616854 65617151 -111356989 + AluSx SINE Alu 2 296 -16 484 315 107 71 chrX 65617151 65617378 -111356762 - L1M4 LINE L1 -5710 832 615 1348 162 9 116 chrX 65617378 65617705 -111356435 + AluJo SINE Alu 2 293 -9 484 315 107 71 chrX 65617705 65617809 -111356331 - L1M4 LINE L1 -5927 615 516 207 0 0 0 chrX 65617809 65617832 -111356308 + (TG)n Simple_repeat Simple_repeat 2 24 0 484 315 107 71 chrX 65617832 65618109 -111356031 - L1M4 LINE L1 -6026 516 162 609 194 30 37 chrX 65618109 65618243 -111355897 - FLAM_A SINE Alu 0 133 1 484 315 107 71 chrX 65618243 65618407 -111355733 - L1M4 LINE L1 -6380 162 5 779 186 58 19 chrX 65618419 65618575 -111355565 - FRAM SINE Alu -3 173 12 245 231 0 0 chrX 65618579 65618631 -111355509 - L1MEc LINE L1 -4760 1636 1585 563 252 144 50 chrX 65618764 65618881 -111355259 - L1MEc LINE L1 -4869 1346 1241 1543 208 24 0 chrX 65618881 65619175 -111354965 - AluJo SINE Alu -11 301 1 563 252 144 50 chrX 65619175 65619492 -111354648 - L1MEc LINE L1 -4974 1241 940 2171 104 0 16 chrX 65619492 65619799 -111354341 - AluSx SINE Alu -10 302 1 563 252 144 50 chrX 65619799 65619949 -111354191 - L1MEc LINE L1 -5275 940 806 778 321 87 13 chrX 65620127 65620588 -111353552 - L1MEc LINE L1 -5867 529 35 2968 127 31 14 chrX 65620757 65621270 -111352870 - L1PA16 LINE L1 -9 6157 5636 1158 212 172 48 chrX 65621484 65622024 -111352116 - MLT1E1 LTR MaLR 0 654 1 373 312 99 7 chrX 65622128 65622269 -111351871 - MIR SINE MIR -13 249 96 516 233 23 98 chrX 65622418 65622607 -111351533 + L1MC5 LINE L1 7660 7819 -142 2139 105 0 36 chrX 65622607 65622913 -111351227 - AluSg SINE Alu -15 295 1 516 233 23 98 chrX 65622913 65623028 -111351112 + L1MC5 LINE L1 7819 7941 -20 24 53 0 0 chrX 65623086 65623124 -111351016 + AT_rich Low_complexity Low_complexity 1 38 0 2061 123 10 0 chrX 65623125 65623434 -111350706 - AluSq SINE Alu -1 312 1 635 267 29 12 chrX 65623528 65623700 -111350440 + MIR SINE MIR 3 177 -85 502 130 22 54 chrX 65624027 65624211 -111349929 + CT-rich Low_complexity Low_complexity 1 178 0 236 93 19 56 chrX 65624211 65624265 -111349875 + (TCC)n Simple_repeat Simple_repeat 1 52 0 198 140 0 53 chrX 65624272 65624329 -111349811 + (TTC)n Simple_repeat Simple_repeat 2 55 0 2471 116 34 5 chrX 65624538 65624918 -111349222 - MSTA LTR MaLR -37 391 1 246 333 0 74 chrX 65625247 65625355 -111348785 - L2 LINE L2 -40 3232 3133 2027 110 3 14 chrX 65625803 65626094 -111348046 - AluSx SINE Alu -24 288 1 508 266 104 5 chrX 65626539 65626731 -111347409 - L2 LINE L2 -4 3309 3099 205 327 19 0 chrX 65626786 65626838 -111347302 - L2 LINE L2 -348 2966 2914 234 0 0 0 chrX 65626838 65626864 -111347276 + (T)n Simple_repeat Simple_repeat 1 26 0 315 243 14 0 chrX 65627168 65627238 -111346902 - MIR3 SINE MIR -2 206 136 29 28 0 0 chrX 65627591 65627627 -111346513 + AT_rich Low_complexity Low_complexity 1 36 0 1199 140 0 0 chrX 65628933 65629112 -111345028 + AluSg/x SINE Alu 132 310 0 2013 212 163 111 chrX 65629112 65629662 -111344478 - L1MD3 LINE L1 -12 7983 7463 284 244 11 67 chrX 65629662 65629752 -111344388 - MLT1F1 LTR MaLR -448 119 35 2013 212 163 111 chrX 65629752 65630101 -111344039 - L1MD3 LINE L1 -532 7463 6732 4738 212 23 39 chrX 65630120 65631400 -111342740 - L1M4 LINE L1 -906 5240 3981 384 193 7 118 chrX 65632129 65632191 -111341949 - MLT1F LTR MaLR -5 537 496 1434 194 28 21 chrX 65632191 65632480 -111341660 + AluJo SINE Alu 2 292 -10 384 193 7 118 chrX 65632480 65632552 -111341588 - MLT1F LTR MaLR -46 496 418 1220 167 5 28 chrX 65633232 65633448 -111340692 - AluJo SINE Alu -30 282 72 314 157 45 18 chrX 65633448 65633518 -111340622 - FLAM_A SINE Alu -14 119 71 644 183 0 32 chrX 65633528 65633654 -111340486 - FLAM_A SINE Alu -11 122 1 22 35 0 0 chrX 65633675 65633704 -111340436 + AT_rich Low_complexity Low_complexity 1 29 0 2424 50 0 31 chrX 65633834 65634155 -111339985 - AluY SINE Alu 0 311 1 648 198 0 0 chrX 65634435 65634546 -111339594 - MER77 LTR ERV1 -6 599 489 10535 183 15 8 chrX 65634663 65635014 -111339126 - L1PB1 LINE L1 -8 6859 6512 666 0 0 0 chrX 65635014 65635088 -111339052 + (TA)n Simple_repeat Simple_repeat 2 75 0 10535 183 15 8 chrX 65635088 65636454 -111337686 - L1PB1 LINE L1 -355 6512 5158 234 62 0 0 chrX 65636454 65636486 -111337654 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 10535 183 15 8 chrX 65636486 65636720 -111337420 - L1PB1 LINE L1 -1709 5158 4927 2554 45 3 6 chrX 65636720 65637032 -111337108 - AluY SINE Alu 0 311 1 10535 183 15 8 chrX 65637032 65638253 -111335887 - L1PB1 LINE L1 -1940 4927 3660 569 248 132 80 chrX 65638272 65638773 -111335367 - L1PB1 LINE L1 -6091 772 246 * 832 258 50 22 chrX 65638772 65639110 -111335030 - L1MC4a LINE L1 -349 5772 5484 207 0 0 0 chrX 65639248 65639271 -111334869 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2087 105 3 7 chrX 65639506 65639792 -111334348 + AluSx SINE Alu 1 285 -27 186 43 0 0 chrX 65639795 65639818 -111334322 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 423 182 0 0 chrX 65642973 65643039 -111331101 - MER2 DNA MER2_type 0 345 280 917 201 0 0 chrX 65643068 65643222 -111330918 + FRAM SINE Alu 1 154 -12 1003 186 0 21 chrX 65643228 65643416 -111330724 + FRAM SINE Alu 1 176 0 1605 147 7 29 chrX 65643416 65643689 -111330451 - MER2 DNA MER2_type -78 267 1 237 264 64 16 chrX 65644951 65645076 -111329064 + L1ME4a LINE L1 5982 6112 -9 1769 183 0 0 chrX 65645818 65646102 -111328038 + AluJb SINE Alu 1 284 -28 2360 112 9 0 chrX 65646175 65646524 -111327616 + L1MA4A LINE L1 5941 6292 -11 4488 176 23 15 chrX 65647347 65647420 -111326720 + L1MB4 LINE L1 5196 5267 -913 1075 180 111 14 chrX 65647420 65647637 -111326503 + MER8 DNA MER2_type 2 239 0 4488 176 23 15 chrX 65647637 65648508 -111325632 + L1MB4 LINE L1 5267 6148 -32 209 32 0 32 chrX 65648508 65648539 -111325601 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 1607 77 0 0 chrX 65648539 65648748 -111325392 - L1PA8 LINE L1 -24 6148 5940 382 284 39 24 chrX 65648833 65648960 -111325180 - MER5B DNA MER1_type -49 129 1 302 252 20 66 chrX 65649028 65649179 -111324961 + L1ME4a LINE L1 5975 6118 -3 1101 98 17 6 chrX 65649194 65649368 -111324772 - L1MA6 LINE L1 0 6300 6125 33 25 0 0 chrX 65649368 65649408 -111324732 + AT_rich Low_complexity Low_complexity 1 40 0 773 135 8 32 chrX 65649409 65649535 -111324605 - FLAM_C SINE Alu -17 126 4 289 258 313 0 chrX 65649713 65649895 -111324245 + L1ME LINE L1 5469 5707 -414 319 294 46 72 chrX 65649914 65650067 -111324073 - L1ME4a LINE L1 -4 6117 5969 209 203 31 16 chrX 65650106 65650170 -111323970 + (TA)n Simple_repeat Simple_repeat 2 66 0 301 257 39 10 chrX 65650223 65650336 -111323804 + L1ME LINE L1 5692 5809 -312 236 289 107 15 chrX 65650561 65650758 -111323382 - L1MEd LINE L1 -4937 1182 968 612 270 37 5 chrX 65650777 65650966 -111323174 + L1 LINE L1 4044 4238 -1908 9530 145 24 87 chrX 65650975 65651340 -111322800 - L1MA3 LINE L1 -1 6304 5918 1591 170 53 3 chrX 65651340 65651623 -111322517 + AluSx SINE Alu 4 300 -12 9530 145 24 87 chrX 65651623 65652727 -111321413 - L1MA3 LINE L1 -387 5918 4746 2165 84 42 0 chrX 65652727 65653014 -111321126 - AluYa5 SINE Alu -12 299 1 9530 145 24 87 chrX 65653014 65653380 -111320760 - L1MA3 LINE L1 -1559 4746 4359 2005 133 17 0 chrX 65653380 65653682 -111320458 - AluSx SINE Alu -5 307 1 9530 145 24 87 chrX 65653682 65654343 -111319797 - L1MA3 LINE L1 -1946 4359 4082 859 123 15 0 chrX 65654343 65654473 -111319667 - FLAM_C SINE Alu 0 133 2 9530 145 24 87 chrX 65654473 65655324 -111318816 - L1MA3 LINE L1 -2223 4082 3179 1222 189 34 10 chrX 65655343 65655639 -111318501 - L1 LINE L1 -2366 3780 3478 225 221 35 53 chrX 65655649 65655669 -111318471 - L1MA6 LINE L1 0 6300 5990 2165 103 0 3 chrX 65655669 65655960 -111318180 - AluSx SINE Alu -12 300 11 5093 147 25 27 chrX 65655964 65657423 -111316717 - L1PB4 LINE L1 -3 6153 4701 2159 103 0 35 chrX 65657439 65657749 -111316391 + AluSq SINE Alu 1 299 -14 796 136 0 0 chrX 65657751 65657891 -111316249 + L1 LINE L1 4541 4680 -1466 1294 218 115 5 chrX 65657895 65658340 -111315800 - L1 LINE L1 -2665 3481 2988 1792 219 81 25 chrX 65658340 65658807 -111315333 + L1M4 LINE L1 2780 3286 -2860 1640 183 3 22 chrX 65658807 65659124 -111315016 + AluJo SINE Alu 2 312 0 1792 219 81 25 chrX 65659124 65659222 -111314918 + L1M4 LINE L1 3286 3377 -2769 1627 162 0 46 chrX 65659620 65659923 -111314217 - AluJo SINE Alu -14 298 10 1705 220 71 11 chrX 65660011 65660489 -111313651 + Charlie4a DNA MER1_type 1 507 -1 1605 175 3 28 chrX 65660869 65661195 -111312945 - L1MD3 LINE L1 -1 7994 7677 228 35 0 0 chrX 65661502 65661531 -111312609 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chrX 65662645 65662673 -111311467 + AT_rich Low_complexity Low_complexity 1 28 0 5328 132 30 32 chrX 65662673 65663772 -111310368 - L1PA16 LINE L1 -9 6157 5083 326 111 0 0 chrX 65664827 65664872 -111309268 + tRNA-Met-e tRNA tRNA 1 45 -30 1025 284 47 38 chrX 65665355 65665999 -111308141 + L1MEd LINE L1 148 838 -5281 421 262 59 20 chrX 65666025 65666244 -111307896 + L1ME3 LINE L1 5645 5859 -305 22 56 0 0 chrX 65666528 65666564 -111307576 + AT_rich Low_complexity Low_complexity 1 36 0 252 289 22 22 chrX 65667751 65667841 -111306299 + L2 LINE L2 1868 1957 -1357 2094 152 0 0 chrX 65667863 65668173 -111305967 - AluJb SINE Alu -2 310 1 2402 71 3 0 chrX 65668289 65668584 -111305556 - AluSp SINE Alu -17 296 1 2226 99 7 10 chrX 65668683 65668985 -111305155 - AluSq SINE Alu -12 301 1 25 35 0 52 chrX 65668993 65669051 -111305089 + AT_rich Low_complexity Low_complexity 1 55 0 1943 189 64 92 chrX 65670152 65670484 -111303656 - L1M4 LINE L1 -944 5202 4862 2434 73 0 7 chrX 65670484 65670786 -111303354 - AluY SINE Alu -11 300 1 1943 189 64 92 chrX 65670786 65671157 -111302983 - L1M4 LINE L1 -1284 4862 4519 529 215 54 27 chrX 65671453 65671602 -111302538 - L1MA9 LINE L1 -30 6282 6130 1532 181 52 27 chrX 65671677 65672439 -111301701 - L1MB8 LINE L1 -9 6169 5197 771 150 15 8 chrX 65672496 65672629 -111301511 - AluJo SINE Alu -178 134 1 2297 246 83 4 chrX 65672638 65673381 -111300759 - L1MB8 LINE L1 -953 5193 4392 1955 221 50 12 chrX 65673393 65673896 -111300244 - L1MB8 LINE L1 -1887 4259 3738 434 266 135 32 chrX 65673971 65674046 -111300094 - L1ME LINE L1 -309 5812 5746 1976 147 14 0 chrX 65674046 65674338 -111299802 - AluSx SINE Alu -16 296 1 434 266 135 32 chrX 65674338 65674514 -111299626 - L1ME LINE L1 -375 5746 5535 21209 153 35 20 chrX 65674820 65675506 -111298634 - L1MA3 LINE L1 -1 7723 7049 2158 121 0 31 chrX 65675506 65675828 -111298312 - AluSx SINE Alu 0 312 1 21209 153 35 20 chrX 65675828 65677576 -111296564 - L1MA3 LINE L1 -675 7049 5329 2057 139 7 3 chrX 65677576 65677878 -111296262 - AluSx SINE Alu -8 304 2 21209 153 35 20 chrX 65677878 65678690 -111295450 - L1MA3 LINE L1 -2395 5329 4531 2339 109 3 0 chrX 65678690 65679002 -111295138 - AluSq SINE Alu 0 313 1 21209 153 35 20 chrX 65679002 65683344 -111290796 - L1MA3 LINE L1 -3193 4531 13 487 213 53 7 chrX 65683350 65683500 -111290640 - L1MB8 LINE L1 -2498 3648 3492 4061 154 28 10 chrX 65683550 65684355 -111289785 + L1MB3 LINE L1 5193 6010 -173 232 348 0 0 chrX 65684463 65684532 -111289608 + L2 LINE L2 3236 3304 -9 222 225 0 0 chrX 65685069 65685109 -111289031 + (CTA)n Simple_repeat Simple_repeat 2 41 0 1102 231 8 4 chrX 65685261 65685495 -111288645 - MIR SINE MIR -26 236 2 21 0 0 0 chrX 65685621 65685642 -111288498 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 65686212 65686240 -111287900 + (CA)n Simple_repeat Simple_repeat 2 29 0 322 194 81 0 chrX 65686279 65686341 -111287799 + L2 LINE L2 3247 3313 0 26 0 0 0 chrX 65686900 65686926 -111287214 + AT_rich Low_complexity Low_complexity 1 26 0 2317 217 23 23 chrX 65687031 65687593 -111286547 - L1ME1 LINE L1 -249 5917 5356 209 206 0 16 chrX 65687690 65687697 -111286443 + (CATATA)n Simple_repeat Simple_repeat 3 9 -55 1612 142 122 10 chrX 65687697 65688008 -111286132 - MER7A DNA MER2_type -1 345 2 209 206 0 16 chrX 65688008 65688063 -111286077 + (CATATA)n Simple_repeat Simple_repeat 9 64 0 192 238 95 29 chrX 65688064 65688169 -111285971 + L3b LINE CR1 1164 1275 -308 21 95 0 0 chrX 65688320 65688383 -111285757 + AT_rich Low_complexity Low_complexity 1 63 0 1220 154 4 53 chrX 65688678 65688924 -111285216 - MER46A DNA MER2_type -2 234 1 5899 219 89 86 chrX 65689303 65690663 -111283477 - L1MD1 LINE L1 -13 6623 5268 1553 175 77 0 chrX 65690663 65690949 -111283191 + AluJo SINE Alu 1 308 -4 5899 219 89 86 chrX 65690949 65691986 -111282154 - L1MD1 LINE L1 -1368 5268 4235 758 157 0 8 chrX 65691986 65692120 -111282020 - FRAM SINE Alu -10 166 34 5899 219 89 86 chrX 65692120 65694359 -111279781 - L1MD1 LINE L1 -2401 4235 2003 2022 138 3 0 chrX 65694359 65694649 -111279491 - AluJb SINE Alu -21 291 1 5899 219 89 86 chrX 65694649 65695252 -111278888 - L1MD1 LINE L1 -4633 2003 1403 1924 153 7 0 chrX 65695252 65695546 -111278594 - AluSx SINE Alu -16 296 1 5899 219 89 86 chrX 65695546 65696435 -111277705 - L1MD1 LINE L1 -5233 1403 224 1796 176 3 0 chrX 65696435 65696724 -111277416 + AluJb SINE Alu 1 290 -22 5899 219 89 86 chrX 65696724 65696853 -111277287 - L1MD1 LINE L1 -6412 224 97 778 211 28 20 chrX 65696854 65696906 -111277234 + L1ME4a LINE L1 5128 5178 -986 2282 177 46 55 chrX 65696906 65697379 -111276761 + MLT2B1 LTR ERVL 1 470 -50 339 85 0 0 chrX 65697379 65697426 -111276714 + (CA)n Simple_repeat Simple_repeat 2 48 0 2282 177 46 55 chrX 65697426 65697477 -111276663 + MLT2B1 LTR ERVL 470 520 0 778 211 28 20 chrX 65697477 65697729 -111276411 + L1ME4a LINE L1 5178 5431 -733 2004 198 92 44 chrX 65697733 65698280 -111275860 + L1ME2 LINE L1 4857 5376 -2432 1844 156 3 10 chrX 65698280 65698569 -111275571 + AluJo SINE Alu 12 298 -14 2004 198 92 44 chrX 65698569 65699379 -111274761 + L1ME2 LINE L1 5376 7776 -32 736 249 73 12 chrX 65699390 65699635 -111274505 + L1ME4a LINE L1 5462 5721 -441 236 100 25 0 chrX 65699769 65699809 -111274331 + (TG)n Simple_repeat Simple_repeat 2 42 0 452 252 217 4 chrX 65700599 65700829 -111273311 + L1ME4a LINE L1 5749 6027 -94 410 270 22 28 chrX 65700898 65701076 -111273064 - HAL1 LINE L1 0 2507 2331 718 215 45 121 chrX 65701099 65701359 -111272781 - HAL1 LINE L1 -283 2224 2001 2332 105 7 0 chrX 65701359 65701664 -111272476 + AluSx SINE Alu 1 307 -5 718 215 45 121 chrX 65701664 65701784 -111272356 - HAL1 LINE L1 -506 2001 1873 30 69 0 0 chrX 65702901 65702959 -111271181 + AT_rich Low_complexity Low_complexity 1 58 0 470 293 38 0 chrX 65704159 65704292 -111269848 - MIR SINE MIR -114 148 11 264 289 68 10 chrX 65704581 65704702 -111269438 - MIR SINE MIR -78 130 7 204 206 0 0 chrX 65704705 65704739 -111269401 + polypyrimidine Low_complexity Low_complexity 1 34 0 900 186 0 0 chrX 65704740 65704917 -111269223 + CT-rich Low_complexity Low_complexity 1 177 0 2143 88 11 14 chrX 65704927 65705211 -111268929 - AluSg SINE Alu -25 285 3 5764 55 8 1 chrX 65705223 65705956 -111268184 - L1PA8 LINE L1 -2 6170 5433 2151 138 0 0 chrX 65706787 65707083 -111267057 - AluSx SINE Alu -16 296 1 239 345 71 0 chrX 65707116 65707229 -111266911 - L2 LINE L2 0 3313 3193 271 373 103 22 chrX 65707525 65707836 -111266304 - L2 LINE L2 -433 2881 2546 204 357 43 14 chrX 65708412 65708482 -111265658 + L2 LINE L2 3162 3233 -39 13132 39 1 3 chrX 65708482 65710853 -111263287 - L1PA5 LINE L1 -1 6153 3778 369 62 0 0 chrX 65711102 65711150 -111262990 + (CATTT)n Simple_repeat Simple_repeat 3 50 0 704 190 0 0 chrX 65711152 65711268 -111262872 - FLAM_C SINE Alu -17 116 1 2054 119 7 0 chrX 65711709 65711995 -111262145 - AluSx SINE Alu -16 296 9 383 293 218 0 chrX 65712967 65713114 -111261026 + MIR SINE MIR 84 262 0 349 276 8 79 chrX 65714070 65714197 -111259943 + L2 LINE L2 3155 3272 0 447 201 26 106 chrX 65714256 65714322 -111259818 + MER5A DNA MER1_type 2 72 -106 1782 168 31 0 chrX 65714322 65714608 -111259532 + AluJo SINE Alu 1 295 -17 447 201 26 106 chrX 65714608 65714712 -111259428 + MER5A DNA MER1_type 72 166 -12 479 238 282 10 chrX 65714773 65714979 -111259161 - MIR SINE MIR 0 262 1 293 255 284 0 chrX 65715218 65715320 -111258820 + MIR SINE MIR 2 132 -130 246 340 51 15 chrX 65715325 65715522 -111258618 - HAL1 LINE L1 -1195 1312 1109 308 269 144 19 chrX 65715859 65715963 -111258177 + MIR SINE MIR 129 245 -17 1484 8 0 0 chrX 65716037 65716244 -111257896 - L1P1 LINE L1 -717 5438 5232 3825 22 0 0 chrX 65716244 65716688 -111257452 + L1PA2 LINE L1 5710 6154 -1 268 251 204 30 chrX 65716889 65717056 -111257084 - L1MC4 LINE L1 -61 7981 7786 25664 83 6 3 chrX 65717149 65721525 -111252615 - L1PA7 LINE L1 -16 6138 1754 244 192 40 146 chrX 65721562 65721713 -111252427 - L1MC5 LINE L1 -535 7426 7292 188 296 182 0 chrX 65721782 65721870 -111252270 - MIR SINE MIR -11 251 148 2385 88 0 0 chrX 65721911 65722208 -111251932 + AluSc SINE Alu 1 297 -12 255 347 71 0 chrX 65722290 65722388 -111251752 + MIR3 SINE MIR 97 201 -7 2368 123 21 8 chrX 65722472 65722837 -111251303 - L1PB4 LINE L1 0 6156 5784 399 21 0 0 chrX 65722837 65722885 -111251255 + (TG)n Simple_repeat Simple_repeat 2 49 0 2368 123 21 8 chrX 65722885 65722902 -111251238 - L1PB4 LINE L1 -372 5784 5769 1740 111 19 8 chrX 65722902 65723155 -111250985 - L1PA11 LINE L1 -2 6172 5909 529 105 13 19 chrX 65723157 65723263 -111250877 - L1PA11 LINE L1 -372 5784 5681 813 165 0 0 chrX 65723425 65723552 -111250588 - FLAM_A SINE Alu -6 127 1 542 256 63 31 chrX 65723602 65723793 -111250347 - L2 LINE L2 -1224 2090 1894 707 248 76 38 chrX 65723794 65723969 -111250171 - MIR SINE MIR -36 226 40 939 212 47 0 chrX 65723969 65724162 -111249978 - MER3 DNA MER1_type -3 206 5 707 248 76 38 chrX 65724162 65724196 -111249944 - MIR SINE MIR -222 40 9 186 133 0 0 chrX 65724235 65724265 -111249875 + (TG)n Simple_repeat Simple_repeat 2 31 0 1004 172 18 12 chrX 65724892 65725061 -111249079 + FAM SINE Alu 1 170 -5 2036 96 3 73 chrX 65725066 65725380 -111248760 + AluSx SINE Alu 1 292 -20 336 298 60 78 chrX 65727084 65727302 -111246838 + L1MC4a LINE L1 5693 5906 -1902 16196 137 19 23 chrX 65727313 65730459 -111243681 - L1PA11 LINE L1 0 7612 4449 2169 105 0 7 chrX 65730459 65730784 -111243356 - AluSx SINE Alu 0 312 3 16196 137 19 23 chrX 65730784 65731319 -111242821 - L1PA11 LINE L1 -3163 4449 3913 4366 244 8 30 chrX 65731327 65732615 -111241525 - L1PA11 LINE L1 -4033 3551 2292 3368 249 119 40 chrX 65732613 65733900 -111240240 - L1PA11 LINE L1 -6186 1395 7 * 1887 123 51 0 chrX 65734513 65734789 -111239351 + AluSx SINE Alu 10 299 -13 381 296 56 16 chrX 65734944 65735069 -111239071 + MIR3 SINE MIR 27 156 -52 21 36 0 0 chrX 65735203 65735231 -111238909 + AT_rich Low_complexity Low_complexity 1 28 0 1656 191 4 0 chrX 65736085 65736362 -111237778 + AluJo SINE Alu 24 301 -11 21 0 0 0 chrX 65736888 65736909 -111237231 + AT_rich Low_complexity Low_complexity 1 21 0 5885 112 8 1 chrX 65740645 65741522 -111232618 - L1MA3 LINE L1 -1 7723 6841 869 146 0 0 chrX 65741531 65741654 -111232486 - FLAM_C SINE Alu -20 123 1 10883 204 24 8 chrX 65741654 65744863 -111229277 - L1MA3 LINE L1 -743 6822 3560 2344 106 6 0 chrX 65744868 65745207 -111228933 - L1PA13 LINE L1 -5 6809 6469 23 0 0 0 chrX 65745226 65745249 -111228891 + AT_rich Low_complexity Low_complexity 1 23 0 7106 154 22 6 chrX 65745722 65747749 -111226391 - L1PA13 LINE L1 -387 6432 1 2595 61 0 0 chrX 65747762 65748072 -111226068 - AluY SINE Alu -1 310 1 20344 133 73 11 chrX 65748082 65748216 -111225924 - L1MA3 LINE L1 -4003 3562 3438 2174 115 3 3 chrX 65748216 65748520 -111225620 - AluSq SINE Alu -8 305 2 20344 133 73 11 chrX 65748520 65748893 -111225247 - L1MA3 LINE L1 -4127 3438 3090 198 0 0 0 chrX 65748893 65748915 -111225225 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 20344 133 73 11 chrX 65748915 65751746 -111222394 - L1MA3 LINE L1 -4475 3090 16 258 32 0 0 chrX 65754183 65754214 -111219926 + (A)n Simple_repeat Simple_repeat 1 31 0 317 243 92 53 chrX 65756013 65756165 -111217975 + MARNA DNA Mariner 280 437 -149 405 242 24 8 chrX 65758842 65758966 -111215174 - MIR3 SINE MIR 0 208 83 1815 156 10 14 chrX 65759603 65759898 -111214242 - AluJb SINE Alu -16 296 3 201 229 0 0 chrX 65759947 65759982 -111214158 + MIR SINE MIR 87 121 -87 203 299 15 15 chrX 65759990 65760057 -111214083 - MIR SINE MIR -1 261 195 841 56 9 0 chrX 65760293 65760401 -111213739 + MSTA LTR MaLR 1 109 -319 10228 99 7 3 chrX 65760407 65762679 -111211461 - L1PA8A LINE L1 0 6131 3856 1175 215 33 17 chrX 65962681 65962983 -111011157 - MLT-int LTR MaLR -933 802 496 1673 261 38 4 chrX 65963022 65963517 -111010623 - MLT1A1-int LTR MaLR -1223 512 1 1419 246 22 11 chrX 65963517 65963878 -111010262 - MLT1A1 LTR MaLR 0 365 1 2681 214 19 26 chrX 65963878 65964979 -111009161 + L1MA3 LINE L1 4561 5666 -646 15171 178 17 34 chrX 65964983 65967531 -111006609 - L1PA14 LINE L1 -1 7598 5010 300 27 0 0 chrX 65967531 65967568 -111006572 + (TG)n Simple_repeat Simple_repeat 2 38 0 15171 178 17 34 chrX 65967568 65969096 -111005044 - L1PA14 LINE L1 -2589 5010 3458 2189 109 9 40 chrX 65969096 65969418 -111004722 - AluSq SINE Alu -1 312 1 15171 178 17 34 chrX 65969418 65971264 -111002876 - L1PA14 LINE L1 -4141 3458 1775 1487 164 46 0 chrX 65971269 65971573 -111002567 + L1MA3 LINE L1 5984 6301 -4 29 0 0 0 chrX 65971573 65971602 -111002538 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 65971758 65971780 -111002360 + AT_rich Low_complexity Low_complexity 1 22 0 240 224 59 35 chrX 65972111 65972196 -111001944 + MER74B LTR ERVL 42 128 -494 2297 237 99 24 chrX 65972246 65973190 -111000950 + L1MB8 LINE L1 4229 5278 -891 2123 111 0 3 chrX 65973190 65973478 -111000662 - AluSq SINE Alu -16 297 11 2297 237 99 24 chrX 65973478 65973640 -111000500 + L1MB8 LINE L1 5278 5426 -743 1600 246 11 42 chrX 65973648 65974119 -111000021 + MER68 LTR ERV1 82 537 -25 4770 228 54 28 chrX 65974217 65976984 -110997156 + HERVL68 LTR ERVL 58 3016 -21 1688 218 51 5 chrX 65977013 65977408 -110996732 + MER68 LTR ERV1 1 413 -149 2066 206 62 11 chrX 65977420 65977969 -110996171 + L1MB8 LINE L1 5600 6176 -2 769 250 118 6 chrX 65978050 65978639 -110995501 - LTR50 LTR ERVL -8 787 6 1570 184 42 34 chrX 65979425 65979810 -110994330 + MLT1B LTR MaLR 3 390 0 191 295 33 0 chrX 65979941 65980002 -110994138 + MER5B DNA MER1_type 3 65 -113 7618 209 116 32 chrX 65980003 65981149 -110992991 + L1MCa LINE L1 19 1067 -5359 1943 96 6 114 chrX 65981149 65981481 -110992659 - AluSg SINE Alu -14 296 1 7618 209 116 32 chrX 65981481 65982278 -110991862 + L1MCa LINE L1 1067 1795 -4631 2134 111 0 7 chrX 65982278 65982584 -110991556 + AluSg SINE Alu 1 304 -6 7618 209 116 32 chrX 65982584 65983515 -110990625 + L1MCa LINE L1 1795 3140 -3286 3228 97 2 5 chrX 65983522 65983967 -110990173 - MLT2A1 LTR ERVL 0 444 1 39337 93 16 3 chrX 65983967 65989549 -110984591 - HERVL-A1 LTR ERVL 0 5654 1 319 156 0 78 chrX 65989549 65989589 -110984551 - MLT2A2 LTR ERVL 0 444 411 729 0 0 0 chrX 65989589 65989670 -110984470 + (CATATA)n Simple_repeat Simple_repeat 4 84 0 319 156 0 78 chrX 65989670 65989706 -110984434 - MLT2A2 LTR ERVL -33 411 374 261 0 0 0 chrX 65989782 65989811 -110984329 + (TA)n Simple_repeat Simple_repeat 2 30 0 2499 111 0 28 chrX 65989843 65990232 -110983908 - MLT2A2 LTR ERVL -75 378 1 1317 251 49 3 chrX 65990235 65990582 -110983558 - MLT1A1 LTR MaLR -2 363 1 2146 159 29 12 chrX 65990601 65991009 -110983131 - L1MA4A LINE L1 -13 6290 5876 1571 189 17 57 chrX 65991011 65991418 -110982722 - L1MA4A LINE L1 -513 5790 5400 9031 206 24 22 chrX 65991421 65991553 -110982587 + L1M1 LINE L1 406 536 -7029 2496 67 3 0 chrX 65991553 65991852 -110982288 - AluY SINE Alu -11 300 1 9031 206 24 22 chrX 65991852 65993645 -110980495 + L1M1 LINE L1 536 2335 -5230 12158 110 14 3 chrX 65993662 65996294 -110977846 - L1PA7 LINE L1 -1 6153 3499 6758 46 3 0 chrX 65996295 65997168 -110976972 - L1PA5 LINE L1 -4 6150 5275 8620 47 17 0 chrX 65997169 65999014 -110975126 + L1PA4 LINE L1 4294 6153 -2 6664 204 28 57 chrX 65999014 66000281 -110973859 + L1M1 LINE L1 2669 3972 -3593 333 0 0 0 chrX 66000281 66000318 -110973822 + (TA)n Simple_repeat Simple_repeat 1 37 0 6664 204 28 57 chrX 66000318 66002064 -110972076 + L1M1 LINE L1 3972 5593 -1972 615 269 3 85 chrX 66002164 66002490 -110971650 + MLT-int LTR MaLR 769 1119 -615 2865 291 100 22 chrX 66002492 66003798 -110970342 + MLT1A1-int LTR MaLR 321 1728 -7 1562 223 14 25 chrX 66003804 66004171 -110969969 + MLT1A1 LTR MaLR 1 363 -2 11408 191 23 9 chrX 66004172 66005915 -110968225 + L1M1 LINE L1 708 2491 -5074 2428 97 0 0 chrX 66005915 66006223 -110967917 + AluSq SINE Alu 1 308 -5 11408 191 23 9 chrX 66006223 66006786 -110967354 + L1M1 LINE L1 2491 3045 -4520 9878 235 62 11 chrX 66006809 66009939 -110964201 + L1PA13 LINE L1 1 3315 -3482 395 226 10 0 chrX 66009941 66010043 -110964097 + (TA)n Simple_repeat Simple_repeat 2 104 0 361 226 71 0 chrX 66010043 66010127 -110964013 - L1MC4 LINE L1 -1339 6703 6614 245 200 22 22 chrX 66010143 66010233 -110963907 + L1MC4 LINE L1 6614 6703 -1339 323 250 34 11 chrX 66010237 66010325 -110963815 + L1MC4 LINE L1 6614 6703 -1339 198 222 0 0 chrX 66010325 66010379 -110963761 + (TA)n Simple_repeat Simple_repeat 2 55 0 936 269 3 6 chrX 66010379 66010691 -110963449 + L1PA13 LINE L1 3330 3640 -3157 1080 274 60 43 chrX 66010720 66011188 -110962952 + L1PBa LINE L1 3 478 -6385 4326 58 27 13 chrX 66011189 66012212 -110961928 - MER11A LTR ERVK 0 1266 1 3896 252 25 17 chrX 66012213 66013829 -110960311 + L1PBa LINE L1 475 1639 -5224 * 5609 203 55 14 chrX 66013826 66016557 -110957583 + L1PBb LINE L1 1236 4087 -2775 2379 100 0 0 chrX 66016557 66016868 -110957272 + AluY SINE Alu 1 311 0 5609 203 55 14 chrX 66016868 66017004 -110957136 + L1PBb LINE L1 4087 4216 -2646 * 8665 204 26 5 chrX 66017001 66018546 -110955594 + L1PB2 LINE L1 3 1581 -6000 3516 168 20 26 chrX 66018549 66019328 -110954812 + L1PB2 LINE L1 2391 3179 -4405 * 11822 199 12 13 chrX 66019312 66021912 -110952228 + L1P LINE L1 4191 6788 -796 758 91 16 0 chrX 66021912 66022033 -110952107 - L1P4 LINE L1 -681 5480 5358 574 185 0 0 chrX 66022028 66022120 -110952020 - L1P LINE L1 -2275 3871 3780 * 7356 103 5 19 chrX 66022132 66023204 -110950936 + MER11C LTR ERVK 1 1057 -14 4794 202 9 1 chrX 66023222 66024702 -110949438 + L1PB2 LINE L1 6131 7589 0 9686 185 25 36 chrX 66024707 66025076 -110949064 + L1PA13 LINE L1 2995 3366 -2797 2089 187 21 19 chrX 66025076 66025503 -110948637 - MSTA LTR MaLR 0 428 1 9686 185 25 36 chrX 66025503 66027512 -110946628 + L1PA13 LINE L1 3366 5322 -841 21433 34 1 0 chrX 66027512 66030880 -110943260 + L1PA3 LINE L1 2787 6155 0 9686 185 25 36 chrX 66030880 66031714 -110942426 + L1PA13 LINE L1 5322 6163 0 2958 213 27 4 chrX 66031712 66033383 -110940757 + L1MB5 LINE L1 3035 4853 -2712 * 1101 232 46 20 chrX 66033389 66033734 -110940406 - L1M4 LINE L1 -1150 4996 4643 892 248 5 0 chrX 66033757 66033971 -110940169 - L1PB4 LINE L1 -2 6154 5940 3925 190 81 29 chrX 66034058 66034912 -110939228 + MER4D LTR ERV1 6 903 0 2771 267 66 23 chrX 66034941 66036295 -110937845 - L1M4 LINE L1 -1620 4526 3115 2098 185 36 32 chrX 66036303 66036800 -110937340 + L1MB1 LINE L1 5653 6151 -17 22 0 0 0 chrX 66036828 66036850 -110937290 + AT_rich Low_complexity Low_complexity 1 22 0 1562 199 228 0 chrX 66037265 66037687 -110936453 - L1MB3 LINE L1 -41 6142 5625 1221 207 6 19 chrX 66037694 66038013 -110936127 - L1MB3 LINE L1 -1468 4678 4364 1888 163 42 33 chrX 66038068 66038429 -110935711 + THE1B LTR MaLR 1 364 0 339 154 0 0 chrX 66038429 66038481 -110935659 + THE1B-int LTR MaLR 1 52 -1528 876 261 63 15 chrX 66038483 66038817 -110935323 + L1MB5 LINE L1 5330 5679 -1886 400 92 12 0 chrX 66038888 66038954 -110935186 + Alu SINE Alu 1 50 -252 3038 245 26 18 chrX 66038965 66040198 -110933942 + L1MB5 LINE L1 6341 7585 -8 26 50 0 0 chrX 66040198 66040238 -110933902 + AT_rich Low_complexity Low_complexity 1 40 0 4059 181 41 2 chrX 66040240 66041043 -110933097 - L1MA5 LINE L1 -6 6294 5461 8783 204 17 7 chrX 66041057 66041403 -110932737 - L1PB1 LINE L1 -7 6144 5803 387 0 0 0 chrX 66041403 66041446 -110932694 + (TA)n Simple_repeat Simple_repeat 1 43 0 8783 204 17 7 chrX 66041446 66044157 -110929983 - L1PB1 LINE L1 -348 5803 3055 2935 213 29 31 chrX 66044192 66044449 -110929691 - L1MB3 LINE L1 -1777 4369 4113 7575 91 19 9 chrX 66044449 66046299 -110927841 + L1PA7 LINE L1 4281 6146 -8 2935 213 29 31 chrX 66046299 66046843 -110927297 - L1MB3 LINE L1 -2033 4113 3570 4555 164 53 5 chrX 66046844 66047223 -110926917 - L1PB1 LINE L1 0 6151 5792 237 33 0 0 chrX 66047223 66047253 -110926887 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 383 67 0 17 chrX 66047252 66047312 -110926828 + (TA)n Simple_repeat Simple_repeat 1 59 0 4555 164 53 5 chrX 66047253 66047812 -110926328 - L1PB1 LINE L1 -359 5792 5254 1113 228 16 46 chrX 66047816 66048034 -110926106 + L1 LINE L1 2982 3182 -2964 2262 79 0 10 chrX 66048034 66048353 -110925787 + AluY SINE Alu 1 311 0 1113 228 16 46 chrX 66048353 66048568 -110925572 + L1 LINE L1 3182 3402 -2744 366 239 104 31 chrX 66048547 66048695 -110925445 + L1 LINE L1 4486 4648 -1498 * 3553 111 53 85 chrX 66048695 66049391 -110924749 + L1PA11 LINE L1 5501 6174 0 366 239 104 31 chrX 66049391 66049405 -110924735 + L1 LINE L1 4648 4660 -1486 2169 101 0 3 chrX 66049407 66049693 -110924447 + AluSc SINE Alu 1 285 -24 17210 116 6 14 chrX 66049693 66052182 -110921958 + L1PA8 LINE L1 1856 4323 -1823 1814 120 0 0 chrX 66052182 66052423 -110921717 - AluSg SINE Alu -66 244 4 17210 116 6 14 chrX 66052423 66052644 -110921496 + L1PA8 LINE L1 4323 4544 -1602 * 42523 36 22 1 chrX 66052627 66058656 -110915484 + L1PA2 LINE L1 1 6155 0 6285 102 3 2 chrX 66058656 66060316 -110913824 + L1PA8 LINE L1 4507 6172 0 1013 193 18 5 chrX 66060345 66060568 -110913572 + L1MB3 LINE L1 5925 6150 -33 * 2825 165 20 7 chrX 66060564 66061103 -110913037 - L1MA4 LINE L1 -395 5905 5360 2027 194 12 7 chrX 66061089 66061506 -110912634 + L1MA4 LINE L1 5862 6280 -20 * 226 106 0 21 chrX 66061572 66061619 -110912521 + L1MB3 LINE L1 6137 6182 -1 736 187 13 3 chrX 66061662 66061687 -110912453 - L1M3 LINE L1 -679 5492 5469 738 101 0 0 chrX 66061687 66061796 -110912344 - L1PA13 LINE L1 -8 6155 6047 3191 153 50 30 chrX 66061796 66062470 -110911670 - L1MA6 LINE L1 -11 6289 5602 736 187 13 3 chrX 66062470 66062615 -110911525 - L1M3 LINE L1 -701 5470 5323 6130 108 51 8 chrX 66062673 66063929 -110910211 - L1PA14 LINE L1 -9 6152 4872 336 173 140 40 chrX 66063941 66064091 -110910049 - L1M3 LINE L1 -2980 3166 3002 3832 195 18 71 chrX 66064105 66065228 -110908912 - L1MA9 LINE L1 -50 6262 5198 523 254 44 70 chrX 66065244 66065516 -110908624 - L1MA9 LINE L1 -38 6274 6010 * 849 229 22 18 chrX 66065473 66065696 -110908444 + L1MA9 LINE L1 5802 6025 -287 4711 233 35 15 chrX 66065701 66066344 -110907796 - L1MA9 LINE L1 -936 5210 4582 1469 215 26 0 chrX 66066344 66066693 -110907447 + MER46B DNA MER2_type 1 233 -3 4711 233 35 15 chrX 66066693 66067352 -110906788 - L1MA9 LINE L1 -1564 4582 3881 4029 156 11 31 chrX 66067361 66068109 -110906031 - L1PA13 LINE L1 0 6163 5431 2793 257 8 37 chrX 66068109 66069099 -110905041 - L1PA13 LINE L1 -2913 3884 2924 3990 264 25 12 chrX 66069127 66070472 -110903668 - L1PA13 LINE L1 -4231 2566 1182 1207 318 11 39 chrX 66070566 66071003 -110903137 - L1PA13 LINE L1 -6042 745 321 329 288 0 0 chrX 66071033 66071113 -110903027 - L1PA13 LINE L1 -6459 328 249 314 271 146 10 chrX 66071653 66071749 -110902391 + L2 LINE L2 3203 3311 -2 731 290 44 4 chrX 66073757 66074024 -110900116 + L1MC4a LINE L1 5314 5609 -633 509 245 29 0 chrX 66074043 66074145 -110899995 + L1MA3 LINE L1 179 283 -7282 3075 108 0 59 chrX 66074191 66074347 -110899793 + L1PB1 LINE L1 5650 5814 -337 470 17 17 0 chrX 66074347 66074406 -110899734 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 3075 108 0 59 chrX 66074406 66074778 -110899362 + L1PB1 LINE L1 5814 6147 -4 262 245 0 0 chrX 66074880 66074933 -110899207 - L2 LINE L2 -1323 1991 1939 16726 188 43 16 chrX 66074938 66078926 -110895214 + L1MA3 LINE L1 423 4533 -3032 5406 190 14 13 chrX 66078923 66079121 -110895019 + L1MA3 LINE L1 5547 5743 -1981 * 2052 76 32 76 chrX 66079121 66079315 -110894825 - AluY SINE Alu -10 301 125 204 40 0 0 chrX 66079315 66079340 -110894800 + (TG)n Simple_repeat Simple_repeat 2 26 0 2052 76 32 76 chrX 66079340 66079460 -110894680 - AluY SINE Alu -186 125 1 5406 190 14 13 chrX 66079460 66081416 -110892724 + L1MA3 LINE L1 5743 7705 -19 525 203 33 82 chrX 66081537 66081719 -110892421 + L1MC4a LINE L1 5712 5884 -1924 3760 91 2 51 chrX 66081720 66082272 -110891868 + LTR17 LTR ERV1 256 780 0 3382 69 5 0 chrX 66082272 66082695 -110891445 + HERV17 LTR ERV1 1 425 -8201 1790 155 0 21 chrX 66083106 66083448 -110890692 + AluSx SINE Alu 1 336 0 2441 68 3 0 chrX 66084066 66084361 -110889779 - AluSp SINE Alu -17 296 1 323 261 50 56 chrX 66084537 66084698 -110889442 - L1MC4a LINE L1 -1772 6036 5877 530 47 0 116 chrX 66084703 66084789 -110889351 - LTR17 LTR ERV1 -456 324 249 180 274 48 48 chrX 66084789 66084873 -110889267 + MIR SINE MIR 38 121 -141 1239 39 58 0 chrX 66084873 66085028 -110889112 - LTR17 LTR ERV1 -616 164 1 2414 58 0 0 chrX 66085028 66085320 -110888820 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chrX 66085310 66085349 -110888791 - HERV17 LTR ERV1 -1078 7548 7510 * 44775 53 10 9 chrX 66085342 66090936 -110883204 - HERV17 LTR ERV1 -2607 6019 422 943 155 11 142 chrX 66091620 66091889 -110882251 + L1PA16 LINE L1 5127 5323 -843 2210 60 0 0 chrX 66091889 66092156 -110881984 - AluY SINE Alu -44 267 1 943 155 11 142 chrX 66092156 66092293 -110881847 + L1PA16 LINE L1 5323 5476 -690 11388 229 40 24 chrX 66092301 66093759 -110880381 - L1PB3 LINE L1 -1 6869 5435 1781 152 168 8 chrX 66093759 66094128 -110880012 - MSTA LTR MaLR 0 428 1 11388 229 40 24 chrX 66094128 66096857 -110877283 - L1PB3 LINE L1 -1435 5435 2749 1933 153 30 35 chrX 66096857 66097223 -110876917 + THE1B LTR MaLR 1 364 0 11163 117 1 1 chrX 66097224 66098802 -110875338 + THE1B-int LTR MaLR 3 1580 0 2140 140 27 30 chrX 66098802 66099167 -110874973 + THE1B LTR MaLR 1 364 0 11388 229 40 24 chrX 66099167 66101443 -110872697 - L1PB3 LINE L1 -4120 2750 661 1814 275 32 25 chrX 66101580 66102260 -110871880 - L1PB3 LINE L1 -6176 687 3 3712 161 32 18 chrX 66102269 66102954 -110871186 + L1PA16 LINE L1 5463 6157 -9 2279 169 28 5 chrX 66102965 66103391 -110870749 + L1PA16 LINE L1 5722 6157 -9 2081 113 7 0 chrX 66103680 66103996 -110870144 + AluSx SINE Alu 1 318 0 203 111 0 44 chrX 66104033 66104078 -110870062 + (CATA)n Simple_repeat Simple_repeat 1 43 0 193 279 228 0 chrX 66104303 66104382 -110869758 - L2 LINE L2 -5 3308 3212 453 127 0 0 chrX 66104382 66104461 -110869679 - L1MA10 LINE L1 0 6334 6256 3675 208 39 16 chrX 66104461 66105419 -110868721 - L1MB1 LINE L1 -7 6182 5145 3629 90 12 0 chrX 66105419 66105930 -110868210 - L1PA12 LINE L1 0 6168 5652 3675 208 39 16 chrX 66105930 66106215 -110867925 - L1MB1 LINE L1 -1044 5145 4868 4574 142 23 12 chrX 66106216 66106405 -110867735 - L1PA15 LINE L1 -2 6163 5977 2335 98 0 0 chrX 66106405 66106702 -110867438 - AluY SINE Alu -14 297 1 4574 142 23 12 chrX 66106702 66107199 -110866941 - L1PA15 LINE L1 -188 5977 5487 2031 138 7 0 chrX 66107199 66107489 -110866651 - AluSq SINE Alu -19 294 3 4574 142 23 12 chrX 66107489 66108224 -110865916 - L1PA15 LINE L1 -678 5487 4740 33 0 0 0 chrX 66108230 66108263 -110865877 + AT_rich Low_complexity Low_complexity 1 33 0 683 199 73 37 chrX 66108468 66108659 -110865481 + L1MD2 LINE L1 5727 5924 -318 767 241 154 43 chrX 66108674 66108973 -110865167 + L1MD2 LINE L1 6017 6348 -11 367 213 109 109 chrX 66109031 66109074 -110865066 + L2 LINE L2 3104 3146 -167 867 45 0 0 chrX 66109074 66109186 -110864954 + (TATTG)n Simple_repeat Simple_repeat 3 114 0 367 213 109 109 chrX 66109186 66109344 -110864796 + L2 LINE L2 3145 3305 -8 197 312 26 33 chrX 66109388 66109514 -110864626 - MIR3 SINE MIR -51 157 39 2221 98 0 3 chrX 66109955 66110242 -110863898 + AluSg SINE Alu 1 286 -24 198 0 0 0 chrX 66110247 66110269 -110863871 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 204 414 58 0 chrX 66110448 66110552 -110863588 - L2 LINE L2 -18 3254 3145 1757 109 15 18 chrX 66110732 66111006 -110863134 - L1PA10 LINE L1 -1 6167 5895 19115 39 1 1 chrX 66111027 66114178 -110859962 - L1PA3 LINE L1 0 6155 3041 5240 37 0 0 chrX 66114189 66114834 -110859306 + L1PA10 LINE L1 2007 2651 -3495 12724 148 41 23 chrX 66114836 66116354 -110857786 + L1PA10 LINE L1 3118 4607 -1561 1859 117 8 0 chrX 66116354 66116611 -110857529 + AluSc SINE Alu 50 308 -1 12724 148 41 23 chrX 66116611 66117263 -110856877 + L1PA10 LINE L1 4607 5246 -922 183 42 0 0 chrX 66117263 66117287 -110856853 + (CAA)n Simple_repeat Simple_repeat 3 26 0 12724 148 41 23 chrX 66117287 66117912 -110856228 + L1PA10 LINE L1 5246 5942 -226 2218 96 3 0 chrX 66117912 66118241 -110855899 + AluY SINE Alu 1 330 0 12724 148 41 23 chrX 66118241 66118453 -110855687 + L1PA10 LINE L1 5942 6149 -19 180 0 0 0 chrX 66118453 66118473 -110855667 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 9741 204 25 14 chrX 66118474 66121877 -110852263 + L1MA5 LINE L1 2863 6299 -1 998 239 3 112 chrX 66121892 66122223 -110851917 + MLT1A1 LTR MaLR 71 365 0 1973 251 54 21 chrX 66122250 66122971 -110851169 + L1ME LINE L1 4626 5370 -776 951 243 4 12 chrX 66123115 66123358 -110850782 + L1ME LINE L1 5355 5595 -569 1189 277 142 20 chrX 66123383 66124073 -110850067 + L1MC4a LINE L1 5369 6142 -1666 459 296 118 21 chrX 66124826 66125012 -110849128 - MIR SINE MIR -50 212 9 190 356 0 0 chrX 66124998 66125057 -110849083 + L2 LINE L2 3254 3312 -1 * 7623 25 0 0 chrX 66125969 66127042 -110847098 - L1PA3 LINE L1 0 6155 5082 7403 26 0 5 chrX 66127042 66127922 -110846218 + L1P LINE L1 3715 4590 -1556 1687 175 119 18 chrX 66130784 66131337 -110842803 + L1MD2 LINE L1 5679 6355 -4 905 18 0 0 chrX 66131509 66131622 -110842518 - L1PA4 LINE L1 -771 5375 5263 6619 26 0 1 chrX 66131622 66132397 -110841743 + L1PA4 LINE L1 5381 6154 -1 658 301 31 10 chrX 66132533 66132726 -110841414 - MIR SINE MIR -54 208 12 21 36 0 0 chrX 66133698 66133726 -110840414 + AT_rich Low_complexity Low_complexity 1 28 0 666 153 160 0 chrX 66134002 66134146 -110839994 - L1MD1 LINE L1 -380 5862 5696 5905 172 22 10 chrX 66134293 66136276 -110837864 - L1PA15 LINE L1 -8 6157 4150 854 45 15 22 chrX 66137920 66138054 -110836086 + (GAAA)n Simple_repeat Simple_repeat 2 134 0 180 320 90 10 chrX 66139282 66139382 -110834758 + L3 LINE CR1 1188 1295 -282 255 61 0 0 chrX 66139995 66140028 -110834112 + (TG)n Simple_repeat Simple_repeat 2 34 0 194 105 26 0 chrX 66141454 66141492 -110832648 + (CA)n Simple_repeat Simple_repeat 2 40 0 2398 89 0 16 chrX 66142554 66142868 -110831272 + AluSx SINE Alu 2 310 -2 333 0 0 0 chrX 66143110 66143147 -110830993 + (TG)n Simple_repeat Simple_repeat 2 38 0 753 154 0 0 chrX 66143170 66143280 -110830860 - FLAM_C SINE Alu -20 123 14 22 0 0 0 chrX 66143346 66143368 -110830772 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chrX 66144241 66144285 -110829855 + AT_rich Low_complexity Low_complexity 1 44 0 470 231 67 131 chrX 66144473 66144741 -110829399 - MIR SINE MIR -10 252 2 704 262 72 68 chrX 66144915 66145194 -110828946 - MLT1K LTR MaLR 0 588 309 521 23 58 12 chrX 66146099 66146185 -110827955 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 21 36 0 0 chrX 66147829 66147857 -110826283 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chrX 66147857 66147898 -110826242 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 0 0 0 chrX 66147958 66147983 -110826157 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2334 107 0 0 chrX 66153204 66153504 -110820636 - AluSg SINE Alu -8 302 3 22 0 0 0 chrX 66154469 66154491 -110819649 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 66154533 66154561 -110819579 + AT_rich Low_complexity Low_complexity 1 28 0 2091 141 0 35 chrX 66155788 66156136 -110818004 - MER1B DNA MER1_type 0 337 2 35 24 0 0 chrX 66160118 66160160 -110813980 + AT_rich Low_complexity Low_complexity 1 42 0 4038 138 17 5 chrX 66162289 66162942 -110811198 - L1PA16 LINE L1 -9 6157 5497 2094 149 64 0 chrX 66162948 66163323 -110810817 - MER57A LTR ERV1 -4 399 1 815 138 150 99 chrX 66163323 66163576 -110810564 - MER57A-int LTR ERV1 0 7537 7272 666 139 25 8 chrX 66163576 66163698 -110810442 - LTR54B LTR ERV1 -371 127 4 20644 123 19 8 chrX 66163699 66167064 -110807076 - MER57A-int LTR ERV1 -391 7146 3743 2462 106 8 3 chrX 66167064 66167420 -110806720 - L1PB1 LINE L1 0 6151 5791 195 42 0 0 chrX 66167420 66167444 -110806696 + (TG)n Simple_repeat Simple_repeat 2 25 0 2462 106 8 3 chrX 66167444 66167455 -110806685 - L1PB1 LINE L1 -360 5791 5782 309 253 0 42 chrX 66167455 66167550 -110806590 + L1MC4 LINE L1 6615 6705 -1337 2854 165 22 18 chrX 66167555 66168462 -110805678 - L1P5 LINE L1 -595 5556 4652 2806 135 42 26 chrX 66168463 66168907 -110805233 + MER9 LTR ERVK 1 455 -56 198 0 0 0 chrX 66168907 66168929 -110805211 + (TG)n Simple_repeat Simple_repeat 1 22 0 2806 135 42 26 chrX 66168929 66168987 -110805153 + MER9 LTR ERVK 455 511 0 4287 111 8 18 chrX 66168987 66169656 -110804484 + HERVK9 LTR ERVK 1 662 -5254 7331 84 2 0 chrX 66169656 66170664 -110803476 + HERVK9 LTR ERVK 1625 2634 -3282 18140 94 2 0 chrX 66170693 66173231 -110800909 + HERVK9 LTR ERVK 3092 5634 -282 2155 120 12 10 chrX 66173257 66173610 -110800530 + HERVK9 LTR ERVK 5635 5916 0 3298 110 43 4 chrX 66173610 66174102 -110800038 + MER9 LTR ERVK 1 511 0 4719 221 21 8 chrX 66174102 66175358 -110798782 - L1 LINE L1 -1490 4656 3384 5653 123 13 2 chrX 66175358 66176960 -110797180 - L1PA11 LINE L1 0 6890 5279 14936 163 78 56 chrX 66176960 66181783 -110792357 - L1PA11 LINE L1 -1895 4967 82 2323 159 112 41 chrX 66181785 66182319 -110791821 - MER57A-int LTR ERV1 -3954 3583 3012 3611 148 46 27 chrX 66182319 66182830 -110791310 - MER57A-int LTR ERV1 -3651 2295 1795 4685 34 7 0 chrX 66182830 66183397 -110790743 - L1PA4 LINE L1 -1 6154 5584 3611 148 46 27 chrX 66183397 66183974 -110790166 - MER57A-int LTR ERV1 -4151 1795 1082 * 4615 156 28 15 chrX 66183961 66185196 -110788944 - MER57A-int LTR ERV1 -6248 1289 1 2019 174 23 5 chrX 66185200 66185591 -110788549 - MER57A LTR ERV1 -5 398 1 2105 195 27 26 chrX 66185621 66186368 -110787772 - L1P4 LINE L1 -674 5492 4747 36720 80 7 6 chrX 66186388 66192519 -110781621 - L1PA6 LINE L1 -11 6143 11 2745 222 16 12 chrX 66192528 66193294 -110780846 - L1 LINE L1 -1387 4759 3991 * 9326 204 39 4 chrX 66193285 66196592 -110777548 - L1PA15 LINE L1 -2 7601 4187 2116 139 47 8 chrX 66196612 66196971 -110777169 - THE1C LTR MaLR 0 375 3 4315 165 98 10 chrX 66196973 66198331 -110775809 - THE1C-int LTR MaLR 0 1580 1 788 174 71 58 chrX 66198331 66198555 -110775585 - THE1C LTR MaLR 0 375 149 285 77 0 0 chrX 66198554 66198593 -110775547 - THE1C LTR MaLR -336 39 1 * 5884 273 74 23 chrX 66198604 66200374 -110773766 - L1PA15 LINE L1 -3424 4160 2482 7392 40 5 0 chrX 66200374 66202002 -110772138 + L1PA5 LINE L1 4523 6154 0 5884 273 74 23 chrX 66202002 66204156 -110769984 - L1PA15 LINE L1 -5102 2482 20 2876 214 10 13 chrX 66204153 66204851 -110769289 - L1P LINE L1 -2132 4014 3319 * 4792 179 17 1 chrX 66204859 66205916 -110768224 + L1PA16 LINE L1 5092 6163 -3 353 256 0 26 chrX 66205962 66206079 -110768061 - L1M4 LINE L1 -4565 2081 1968 1317 181 145 0 chrX 66206101 66206350 -110767790 - AluJb SINE Alu -27 285 1 271 257 0 0 chrX 66206350 66206420 -110767720 - L1M4 LINE L1 -4616 2028 1959 3879 228 33 44 chrX 66206435 66206775 -110767365 - L1M4 LINE L1 -4726 1920 1578 2182 109 0 35 chrX 66206775 66207087 -110767053 - AluSx SINE Alu -11 301 1 3879 228 33 44 chrX 66207087 66208574 -110765566 - L1M4 LINE L1 -5068 1578 24 2205 105 3 0 chrX 66208733 66209019 -110765121 - AluSg SINE Alu -23 287 1 255 333 23 15 chrX 66209038 66209170 -110764970 + MER109 Unknown Unknown 1845 1977 -455 205 355 0 0 chrX 66209476 66209538 -110764602 + L2 LINE L2 3211 3272 0 21 0 0 0 chrX 66210483 66210504 -110763636 + AT_rich Low_complexity Low_complexity 1 21 0 1825 158 11 60 chrX 66210637 66211003 -110763137 + MER7A DNA MER2_type 1 346 0 347 295 51 8 chrX 66211171 66211356 -110762784 - MIR SINE MIR 0 262 23 949 76 0 0 chrX 66212138 66212256 -110761884 - AluSg/x SINE Alu -9 303 186 1274 94 5 25 chrX 66213555 66213758 -110760382 - L1PA13 LINE L1 -19 6144 5946 309 267 25 50 chrX 66214131 66214251 -110759889 - MIR3 SINE MIR -3 205 89 383 253 133 13 chrX 66214817 66214975 -110759165 + MIR SINE MIR 37 213 -49 1073 93 0 37 chrX 66215043 66215205 -110758935 - L1MA1 LINE L1 0 6302 6147 1656 92 27 35 chrX 66215205 66215465 -110758675 + L1MA1 LINE L1 5793 6050 -252 243 0 0 0 chrX 66215808 66215835 -110758305 + (CA)n Simple_repeat Simple_repeat 2 28 0 6580 141 35 34 chrX 66215848 66216107 -110758033 + Tigger3b DNA MER2_type 2 259 -2769 2149 100 11 0 chrX 66216107 66216413 -110757727 + AluSc SINE Alu 1 309 0 6580 141 35 34 chrX 66216413 66217381 -110756759 + Tigger3b DNA MER2_type 259 1231 0 2543 59 0 0 chrX 66217680 66217987 -110756153 + AluY SINE Alu 1 307 -4 25 0 0 0 chrX 66218232 66218257 -110755883 + AT_rich Low_complexity Low_complexity 1 25 0 285 235 59 24 chrX 66218749 66218834 -110755306 - L2 LINE L2 -1 3271 3184 321 330 68 25 chrX 66218901 66219019 -110755121 + L2 LINE L2 3149 3271 -1 890 229 23 74 chrX 66219160 66219418 -110754722 + MIR SINE MIR 2 246 -16 21 36 0 0 chrX 66219418 66219446 -110754694 + AT_rich Low_complexity Low_complexity 1 28 0 332 164 15 0 chrX 66219605 66219672 -110754468 + CT-rich Low_complexity Low_complexity 4 71 0 342 318 114 0 chrX 66220173 66220374 -110753766 - MIR SINE MIR -8 254 31 2236 118 141 68 chrX 66220468 66220952 -110753188 + MER4A LTR ERV1 1 519 -145 13762 53 2 0 chrX 66220952 66222863 -110751277 + L1P2 LINE L1 3636 5550 -604 5081 171 72 51 chrX 66222863 66223398 -110750742 - MER4A-int LTR ERV1 -3238 3360 2837 594 75 0 0 chrX 66223398 66223478 -110750662 + MADE1 DNA Mariner 1 80 0 5081 171 72 51 chrX 66223478 66224989 -110749151 - MER4A-int LTR ERV1 -3761 2837 982 263 114 79 20 chrX 66225011 66225273 -110748867 + (TA)n Simple_repeat Simple_repeat 1 277 0 1993 142 3 3 chrX 66225295 66225598 -110748542 - AluSx SINE Alu -8 304 2 182 37 37 0 chrX 66225598 66225625 -110748515 + (CA)n Simple_repeat Simple_repeat 1 28 0 2163 129 158 104 chrX 66225625 66225937 -110748203 - MER4A-int LTR ERV1 -5487 1111 818 1983 123 4 0 chrX 66225937 66226236 -110747904 + AluSx SINE Alu 5 304 0 2163 129 158 104 chrX 66226236 66226920 -110747220 - MER4A-int LTR ERV1 -5780 818 1 996 133 0 0 chrX 66226923 66227066 -110747074 - MER4A LTR ERV1 0 664 522 4835 55 3 0 chrX 66227066 66227667 -110746473 - L1PA6 LINE L1 -2 6152 5550 15177 138 54 40 chrX 66227667 66229845 -110744295 + MER4A-int LTR ERV1 3362 5598 -1000 1268 127 85 5 chrX 66229845 66230057 -110744083 - MER30 DNA MER1_type 0 230 2 15177 138 54 40 chrX 66230057 66231070 -110743070 + MER4A-int LTR ERV1 5598 6596 -2 3567 119 21 59 chrX 66231075 66231699 -110742441 + MER4A LTR ERV1 1 600 0 235 283 104 28 chrX 66232384 66232490 -110741650 + L2 LINE L2 3159 3272 0 4290 100 2 3 chrX 66232555 66233156 -110740984 + MER4A LTR ERV1 1 600 0 197 225 0 0 chrX 66233563 66233603 -110740537 + MIR SINE MIR 223 262 0 571 186 21 0 chrX 66233655 66233752 -110740388 - Tigger2a DNA MER2_type 0 444 346 * 972 92 35 58 chrX 66233749 66233922 -110740218 - Tigger2a DNA MER2_type -265 169 1 755 317 4 25 chrX 66233922 66234162 -110739978 - MIR SINE MIR -27 235 1 312 27 0 0 chrX 66234846 66234883 -110739257 + (GA)n Simple_repeat Simple_repeat 2 38 0 1340 194 33 15 chrX 66234883 66235156 -110738984 - AluJb SINE Alu -34 278 1 372 88 0 0 chrX 66235277 66235334 -110738806 + (TG)n Simple_repeat Simple_repeat 2 58 0 241 225 50 38 chrX 66235786 66235866 -110738274 + MER89 LTR ERV1 450 530 -29 34 55 0 0 chrX 66236660 66236715 -110737425 + AT_rich Low_complexity Low_complexity 1 55 0 31 44 0 0 chrX 66238130 66238175 -110735965 + AT_rich Low_complexity Low_complexity 1 45 0 2122 140 33 33 chrX 66239470 66239834 -110734306 + THE1B LTR MaLR 1 364 0 11344 93 6 34 chrX 66239834 66241460 -110732680 + THE1B-int LTR MaLR 1 1580 0 2121 135 39 36 chrX 66241460 66241823 -110732317 + THE1B LTR MaLR 1 364 0 25 0 0 0 chrX 66242109 66242134 -110732006 + AT_rich Low_complexity Low_complexity 1 25 0 962 236 0 0 chrX 66242147 66242329 -110731811 - MER5A DNA MER1_type 0 189 8 504 271 0 152 chrX 66242325 66242406 -110731734 - L2 LINE L2 -344 2970 2878 * 842 147 0 0 chrX 66242406 66242549 -110731591 + L1MA10 LINE L1 6185 6327 -7 504 271 0 152 chrX 66242549 66242711 -110731429 - L2 LINE L2 -436 2878 2764 1812 178 0 7 chrX 66243046 66243349 -110730791 + AluJb SINE Alu 8 308 -4 261 57 0 0 chrX 66243465 66243500 -110730640 + (TA)n Simple_repeat Simple_repeat 1 35 0 2531 151 24 11 chrX 66243503 66243966 -110730174 - MER6 DNA MER2_type -61 804 336 397 256 0 11 chrX 66243967 66244057 -110730083 + MER6 DNA MER2_type 258 606 -259 1738 160 0 14 chrX 66244244 66244532 -110729608 + AluJb SINE Alu 3 286 -26 225 221 96 39 chrX 66244603 66244707 -110729433 - L1ME4a LINE L1 -17 6104 5995 207 288 0 14 chrX 66244722 66244795 -110729345 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 2262 79 6 29 chrX 66244914 66245230 -110728910 - AluY SINE Alu -2 309 1 227 315 74 0 chrX 66245248 66245356 -110728784 + L1ME LINE L1 5487 5602 -519 1413 224 33 33 chrX 66245531 66245574 -110728566 - L2 LINE L2 -607 2707 2665 2096 121 27 0 chrX 66245574 66245872 -110728268 + AluSq SINE Alu 1 306 -7 1413 224 33 33 chrX 66245872 66246220 -110727920 - L2 LINE L2 -648 2666 2316 314 325 45 32 chrX 66246207 66246361 -110727779 - MIR3 SINE MIR 0 208 53 * 428 299 6 30 chrX 66246758 66246922 -110727218 + MIR3 SINE MIR 32 191 -17 379 355 27 27 chrX 66247076 66247296 -110726844 + MIR SINE MIR 3 222 -40 1035 251 57 20 chrX 66247395 66247694 -110726446 + L2 LINE L2 3004 3313 0 572 319 21 5 chrX 66247981 66248169 -110725971 + MIR SINE MIR 65 255 -7 5295 93 13 14 chrX 66248889 66249087 -110725053 - L1MA2 LINE L1 0 6304 6107 1941 144 172 8 chrX 66249087 66249454 -110724686 + MSTA LTR MaLR 1 427 -1 5295 93 13 14 chrX 66249454 66250051 -110724089 - L1MA2 LINE L1 -197 6107 5510 5084 177 11 0 chrX 66250070 66251062 -110723078 - L1MA2 LINE L1 -830 5316 4314 10609 191 57 15 chrX 66251074 66254539 -110719601 - L1PB2 LINE L1 -4 6147 2539 1980 174 69 28 chrX 66254745 66255182 -110718958 + LTR65 LTR ERV1 7 461 -208 1228 300 60 8 chrX 66255199 66255579 -110718561 - MLT1G LTR MaLR -149 441 42 849 209 10 8 chrX 66255728 66255916 -110718224 + MLT1F LTR MaLR 366 542 0 7048 68 11 0 chrX 66255957 66257659 -110716481 - L1PA6 LINE L1 -4 6150 4436 259 353 39 20 chrX 66257921 66258023 -110716117 + MIR SINE MIR 38 141 -67 407 196 76 0 chrX 66258025 66258117 -110716023 - L1 LINE L1 -1041 5105 5007 1681 166 3 0 chrX 66258118 66258426 -110715714 + L1MA5 LINE L1 5983 6291 -9 1105 188 0 57 chrX 66258478 66258707 -110715433 - LTR1 LTR ERV1 -8 777 562 303 277 11 0 chrX 66258709 66258803 -110715337 + MIR SINE MIR 168 262 0 200 250 0 0 chrX 66258930 66258974 -110715166 - MIR SINE MIR -160 102 59 271 283 57 68 chrX 66259337 66259514 -110714626 - MER112 DNA MER1_type -45 215 41 2681 184 40 27 chrX 66259538 66260086 -110714054 + LTR1 LTR ERV1 16 570 -215 200 312 39 13 chrX 66260089 66260166 -110713974 - MIR SINE MIR -109 153 75 1234 305 84 29 chrX 66260239 66261134 -110713006 + L2 LINE L2 2375 3313 0 183 42 0 0 chrX 66261661 66261685 -110712455 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 435 292 124 0 chrX 66262584 66262721 -110711419 - L2 LINE L2 0 3313 3160 2510 53 0 7 chrX 66264111 66264412 -110709728 + AluY SINE Alu 1 299 -12 26 0 0 0 chrX 66264477 66264503 -110709637 + AT_rich Low_complexity Low_complexity 1 26 0 745 242 16 5 chrX 66264687 66264873 -110709267 + MER5A DNA MER1_type 1 188 -1 332 250 106 19 chrX 66266020 66266124 -110708016 + MIR SINE MIR 20 132 -76 463 297 132 14 chrX 66266251 66266470 -110707670 - MIR SINE MIR -8 254 10 511 221 80 0 chrX 66266770 66266883 -110707257 - L1PB4 LINE L1 -1 6155 6034 229 293 23 46 chrX 66266882 66267056 -110707084 - HAL1b LINE L1 -989 359 190 * 858 267 168 79 chrX 66267047 66267943 -110706197 - HAL1 LINE L1 0 2507 1544 417 201 15 168 chrX 66267944 66268342 -110705798 - L1ME LINE L1 -4982 1088 752 264 263 42 11 chrX 66268349 66268444 -110705696 - Charlie1 DNA MER1_type -41 2720 2623 346 277 252 0 chrX 66268465 66268584 -110705556 - Charlie1 DNA MER1_type -2571 190 42 831 261 60 54 chrX 66268584 66268938 -110705202 - L1ME LINE L1 -5316 754 434 422 18 18 0 chrX 66268941 66268996 -110705144 + (TG)n Simple_repeat Simple_repeat 2 57 0 606 291 70 27 chrX 66268997 66269327 -110704813 - L1ME LINE L1 -5706 364 21 21 0 0 0 chrX 66269458 66269479 -110704661 + AT_rich Low_complexity Low_complexity 1 21 0 676 319 67 51 chrX 66269581 66270014 -110704126 - L2 LINE L2 -344 2970 2531 435 305 52 49 chrX 66271225 66271691 -110702449 + HAL1b LINE L1 260 726 -622 1997 131 11 65 chrX 66271954 66272348 -110701792 + MER4A LTR ERV1 5 229 -236 434 238 175 14 chrX 66272388 66272531 -110701609 + MER4C LTR ERV1 300 465 0 248 348 25 8 chrX 66272608 66272970 -110701170 + L1M4 LINE L1 2143 2510 -3636 2176 121 3 3 chrX 66273166 66273471 -110700669 - AluSq SINE Alu -2 311 7 2187 123 3 0 chrX 66273489 66273797 -110700343 - AluSp SINE Alu -4 309 1 1532 196 78 17 chrX 66274253 66274611 -110699529 - LTR25 LTR ERV1 0 794 415 236 222 143 0 chrX 66274582 66274645 -110699495 - MER51A LTR ERV1 -354 280 209 * 368 200 0 82 chrX 66274806 66274916 -110699224 - MER61E LTR ERV1 -468 101 1 4694 198 14 4 chrX 66275000 66275999 -110698141 - L1 LINE L1 -1178 4968 3960 867 127 13 13 chrX 66276002 66276152 -110697988 + L1PB1 LINE L1 5999 6148 -3 1348 202 63 12 chrX 66276162 66276493 -110697647 + L1MA6 LINE L1 5762 6109 -191 1219 182 50 35 chrX 66276483 66276879 -110697261 + L1MA4A LINE L1 1735 2136 -4713 * 359 241 91 59 chrX 66276882 66277102 -110697038 + L1ME LINE L1 534 760 -5310 44269 41 0 1 chrX 66277132 66283288 -110690852 - L1PA3 LINE L1 -3 6152 2 360 288 254 0 chrX 66283314 66283432 -110690708 + Charlie1 DNA MER1_type 42 189 -2572 288 253 0 12 chrX 66283467 66283550 -110690590 + Charlie1 DNA MER1_type 2639 2720 -41 509 284 36 30 chrX 66283557 66283892 -110690248 + L1ME LINE L1 752 1088 -4982 328 320 51 108 chrX 66284035 66284351 -110689789 + HAL1 LINE L1 19 316 -2191 291 71 0 0 chrX 66284419 66284461 -110689679 + (TC)n Simple_repeat Simple_repeat 2 43 0 345 24 0 0 chrX 66284461 66284503 -110689637 + (CA)n Simple_repeat Simple_repeat 1 42 0 731 350 23 15 chrX 66284503 66284769 -110689371 + Zaphod DNA AcHobo 90 357 -3674 3891 111 17 69 chrX 66284786 66285479 -110688661 + L1PA12 LINE L1 5508 6164 -4 4745 201 32 37 chrX 66285480 66286098 -110688042 + L1MA4A LINE L1 3866 4485 -2363 2167 117 0 3 chrX 66286098 66286389 -110687751 + AluSx SINE Alu 1 290 -22 4745 201 32 37 chrX 66286389 66287156 -110686984 + L1MA4A LINE L1 4485 5245 -1603 5738 115 9 6 chrX 66287178 66288039 -110686101 - L1PA10 LINE L1 -4 6164 5301 5265 188 21 8 chrX 66288034 66288165 -110685975 + L1MA4A LINE L1 5246 5374 -1631 * 1948 161 36 15 chrX 66288165 66288495 -110685645 + MER1B DNA MER1_type 1 337 0 5265 188 21 8 chrX 66288495 66290099 -110684041 + L1MA4A LINE L1 5374 7005 0 619 210 7 7 chrX 66290103 66290241 -110683899 + L1MC3 LINE L1 6154 6291 -1494 2098 180 38 31 chrX 66290293 66290836 -110683304 - MLT2A2 LTR ERVL 0 554 1 2044 239 88 35 chrX 66290839 66291771 -110682369 + L1MC3 LINE L1 6366 7323 -462 610 224 106 47 chrX 66291774 66291815 -110682325 - MLT2B1 LTR ERVL 0 520 483 447 92 0 0 chrX 66291815 66291880 -110682260 + (TG)n Simple_repeat Simple_repeat 2 66 0 610 224 106 47 chrX 66291880 66292116 -110682024 - MLT2B1 LTR ERVL -37 483 172 883 204 22 36 chrX 66292116 66292341 -110681799 - ERVL-D LTR ERVL -79 5685 5464 9438 172 43 8 chrX 66292341 66294185 -110679955 - L1P LINE L1 -1286 4860 2951 2279 178 2 2 chrX 66294183 66294621 -110679519 + L1P LINE L1 4847 5284 -862 * 1487 43 0 0 chrX 66294608 66294793 -110679347 + L1PA4 LINE L1 2508 2692 -3454 * 6927 33 0 0 chrX 66294809 66295632 -110678508 + L1PA4 LINE L1 5330 6152 -3 1058 201 14 0 chrX 66295645 66295854 -110678286 - ERVL-D LTR ERVL -3197 2567 2356 * 1335 290 41 10 chrX 66295846 66296427 -110677713 - ERVL-D LTR ERVL -5058 617 2 1218 224 45 10 chrX 66296442 66296750 -110677390 - MLT2D LTR ERVL -14 400 82 1940 173 68 12 chrX 66296782 66297210 -110676930 + L1MC3 LINE L1 7326 7777 -8 687 207 52 0 chrX 66297207 66297381 -110676759 + L1MC4a LINE L1 6351 6533 -1275 * 803 153 20 89 chrX 66297381 66297584 -110676556 + MER66A LTR ERV1 290 478 0 4381 198 54 38 chrX 66297603 66298618 -110675522 + MER66A-int LTR ERV1 11 1041 -5635 2379 116 0 6 chrX 66298693 66299048 -110675092 - L1PB1 LINE L1 -1 6150 5798 707 195 142 52 chrX 66299075 66299468 -110674672 - LTR30 LTR ERV1 0 596 238 267 93 0 0 chrX 66299552 66299595 -110674545 + (TA)n Simple_repeat Simple_repeat 1 43 0 3395 162 36 12 chrX 66299597 66300047 -110674093 - L1P5 LINE L1 -376 5775 5337 198 0 0 0 chrX 66300047 66300069 -110674071 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3395 162 36 12 chrX 66300069 66300790 -110673350 - L1P5 LINE L1 -814 5337 4587 229 250 0 0 chrX 66300781 66300841 -110673299 + L1 LINE L1 4480 4539 -1607 * 354 159 29 0 chrX 66300892 66300961 -110673179 + LTR25 LTR ERV1 223 293 -501 2578 149 84 21 chrX 66300979 66301501 -110672639 + LTR25 LTR ERV1 240 794 0 708 228 56 6 chrX 66301641 66301803 -110672337 + MER66B-int LTR ERV1 2934 3103 -3573 9280 182 36 19 chrX 66301893 66303722 -110670418 + MER66B-int LTR ERV1 1211 2842 -3834 2754 337 42 29 chrX 66304063 66305986 -110668154 + MER66B-int LTR ERV1 3687 5634 -2122 13306 130 31 27 chrX 66306030 66308152 -110665988 + MER66B-int LTR ERV1 4548 6676 0 2291 195 12 34 chrX 66308152 66308649 -110665491 + MER66B LTR ERV1 1 486 0 2667 239 84 30 chrX 66308649 66308823 -110665317 + L1MC4a LINE L1 6638 6801 -984 189 0 0 0 chrX 66308823 66308844 -110665296 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2667 239 84 30 chrX 66308844 66309762 -110664378 + L1MC4a LINE L1 6801 7775 -10 2035 181 25 20 chrX 66309762 66310161 -110663979 + MSTB1 LTR MaLR 1 401 -31 420 230 8 16 chrX 66310216 66310342 -110663798 + Zaphod DNA AcHobo 2823 2947 -1084 1561 236 65 33 chrX 66310342 66310605 -110663535 - L1MDa LINE L1 -3860 2394 2141 1555 121 22 0 chrX 66310605 66310837 -110663303 - L1PA11 LINE L1 0 6174 5938 1561 236 65 33 chrX 66310837 66311216 -110662924 - L1MDa LINE L1 -4113 2141 1731 307 269 62 31 chrX 66311232 66311362 -110662778 - L1MC4 LINE L1 -4 8038 7905 2196 127 0 0 chrX 66311416 66311723 -110662417 - AluSx SINE Alu -5 307 1 1856 219 33 15 chrX 66311733 66312336 -110661804 - L1MB2 LINE L1 -2 6169 5477 5446 65 0 1 chrX 66312337 66313031 -110661109 - L1PA7 LINE L1 -1 6153 5461 374 202 64 0 chrX 66313156 66313265 -110660875 - L1ME4a LINE L1 -208 5913 5798 378 0 0 0 chrX 66313275 66313317 -110660823 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 255 118 0 39 chrX 66313321 66313372 -110660768 - L1MB2 LINE L1 -8 6163 6115 8272 29 1 1 chrX 66313376 66315138 -110659002 - L1PA3 LINE L1 -3 6152 4391 2234 98 18 0 chrX 66315147 66315579 -110658561 - L1P3 LINE L1 -678 5476 5036 19113 87 3 6 chrX 66315586 66318345 -110655795 + L1P3 LINE L1 2300 5051 -1095 2314 232 35 22 chrX 66318344 66319207 -110654933 - L1M3 LINE L1 -692 5491 4613 * 753 292 14 4 chrX 66319211 66319488 -110654652 - L1M3 LINE L1 -3596 2550 2271 2427 210 72 7 chrX 66319490 66319564 -110654576 - L1MA9 LINE L1 0 6312 6244 561 68 0 0 chrX 66319564 66319638 -110654502 + (TA)n Simple_repeat Simple_repeat 1 74 0 2427 210 72 7 chrX 66319638 66320177 -110653963 - L1MA9 LINE L1 -68 6244 5659 295 101 63 0 chrX 66320179 66320258 -110653882 + (TA)n Simple_repeat Simple_repeat 2 85 0 4338 211 30 34 chrX 66320260 66320308 -110653832 - L1MC/D LINE L1 -674 5638 5591 225 0 0 0 chrX 66320308 66320333 -110653807 + (CA)n Simple_repeat Simple_repeat 2 26 0 4338 211 30 34 chrX 66320333 66320788 -110653352 - L1MC/D LINE L1 -721 5591 5135 258 32 0 0 chrX 66320788 66320819 -110653321 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4338 211 30 34 chrX 66320819 66321078 -110653062 - L1MC/D LINE L1 -1177 5135 4876 6963 48 19 1 chrX 66321078 66321585 -110652555 + L1PA7 LINE L1 4788 5284 -870 198 0 0 0 chrX 66321585 66321607 -110652533 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6963 48 19 1 chrX 66321607 66322446 -110651694 + L1PA7 LINE L1 5284 6150 -4 4338 211 30 34 chrX 66322446 66323226 -110650914 - L1MC/D LINE L1 -1436 4876 4154 27 49 0 0 chrX 66323430 66323471 -110650669 + AT_rich Low_complexity Low_complexity 1 41 0 27 73 0 0 chrX 66323564 66323619 -110650521 + AT_rich Low_complexity Low_complexity 1 55 0 855 297 35 28 chrX 66323630 66324050 -110650090 + L1MC/D LINE L1 5194 5616 -747 237 213 67 27 chrX 66324129 66324204 -110649936 + L1MC/D LINE L1 5837 5914 -1894 8746 192 29 13 chrX 66324315 66326346 -110647794 - L1MA9 LINE L1 -1 6311 4214 1998 80 84 0 chrX 66326346 66326632 -110647508 - AluY SINE Alu -1 310 1 8746 192 29 13 chrX 66326632 66327603 -110646537 - L1MA9 LINE L1 -2098 4214 3260 9986 227 33 13 chrX 66327606 66331237 -110642903 - L1PB4 LINE L1 0 7594 3893 496 161 17 68 chrX 66331237 66331355 -110642785 + LTR9 LTR ERV1 3 114 -498 653 74 0 0 chrX 66331355 66331436 -110642704 - MER11D LTR ERVK 0 897 817 4182 39 0 0 chrX 66331449 66331932 -110642208 - MER11D LTR ERVK -414 483 1 940 234 10 94 chrX 66331932 66332230 -110641910 + LTR9 LTR ERV1 109 381 -231 929 216 97 22 chrX 66332223 66332492 -110641648 + LTR19C LTR ERV1 491 779 0 * 336 341 89 71 chrX 66332595 66332920 -110641220 - L1PB4 LINE L1 -5726 1859 1529 1116 308 37 36 chrX 66333592 66334189 -110639951 - L1PB4 LINE L1 -6427 1158 10 860 260 46 0 chrX 66334196 66334519 -110639621 - L1MA9 LINE L1 -2881 3265 2928 4822 118 21 17 chrX 66334523 66335078 -110639062 - LOR1-int LTR ERV1 -3753 4367 3816 2450 71 0 0 chrX 66335078 66335375 -110638765 + AluY SINE Alu 1 297 -14 4822 118 21 17 chrX 66335375 66336127 -110638013 - LOR1-int LTR ERV1 -4304 3816 3013 * 5220 147 46 10 chrX 66336126 66336697 -110637443 - LOR1-int LTR ERV1 -5551 2569 1943 186 43 0 0 chrX 66336697 66336720 -110637420 + (TTC)n Simple_repeat Simple_repeat 2 24 0 5220 147 46 10 chrX 66336720 66337165 -110636975 - LOR1-int LTR ERV1 -6177 1943 1516 492 290 84 23 chrX 66338403 66338588 -110635552 - MIR3 SINE MIR -4 204 5 664 308 16 36 chrX 66339191 66339438 -110634702 + MER119 DNA MER1_type 3 244 -339 848 234 60 16 chrX 66339443 66339691 -110634449 + L1MD2 LINE L1 6006 6264 -95 643 219 8 0 chrX 66339695 66339823 -110634317 - MSTB LTR MaLR -297 129 1 243 204 0 0 chrX 66339823 66339888 -110634252 + L1M3 LINE L1 5390 5454 -716 1881 204 26 51 chrX 66339931 66340313 -110633827 - L1MB8 LINE L1 -6 6172 5782 11207 47 10 8 chrX 66340313 66341669 -110632471 + SVA Other Other 13 1371 -15 186 43 0 0 chrX 66341669 66341692 -110632448 + (TA)n Simple_repeat Simple_repeat 2 24 0 1881 204 26 51 chrX 66341692 66341837 -110632303 - L1MB8 LINE L1 -394 5784 5657 1040 207 44 67 chrX 66341946 66342261 -110631879 - L1MB8 LINE L1 -490 5688 5367 2046 181 76 2 chrX 66342261 66342658 -110631482 + MSTB LTR MaLR 1 426 0 7785 206 38 9 chrX 66342660 66344263 -110629877 + MSTB-int LTR MaLR 3 1651 0 1765 206 49 56 chrX 66344265 66344692 -110629448 + MSTB LTR MaLR 3 426 0 1040 207 44 67 chrX 66344692 66344729 -110629411 - L1MB8 LINE L1 -813 5365 5358 204 125 0 0 chrX 66344734 66344766 -110629374 + (TA)n Simple_repeat Simple_repeat 1 32 0 1799 191 14 0 chrX 66344836 66345192 -110628948 - L1PA16 LINE L1 -9 6157 5797 5070 198 61 8 chrX 66345218 66346517 -110627623 - L1M1 LINE L1 -4153 3412 2045 1585 154 87 39 chrX 66346518 66346705 -110627435 + THE1C LTR MaLR 1 178 -197 216 0 0 0 chrX 66346705 66346729 -110627411 + (TC)n Simple_repeat Simple_repeat 2 25 0 1585 154 87 39 chrX 66346729 66346899 -110627241 + THE1C LTR MaLR 178 375 0 2506 160 14 3 chrX 66346900 66347384 -110626756 + THE1C-int LTR MaLR 2 426 -1154 1017 105 195 24 chrX 66347380 66347620 -110626520 - L1P LINE L1 -743 5403 5152 * 5075 96 18 0 chrX 66347620 66348338 -110625802 + L1PA10 LINE L1 5436 6166 -2 21 0 0 0 chrX 66348342 66348363 -110625777 + AT_rich Low_complexity Low_complexity 1 21 0 313 200 0 0 chrX 66348364 66348429 -110625711 + THE1C-int LTR MaLR 471 535 -1116 3324 157 7 22 chrX 66348443 66349021 -110625119 + THE1C-int LTR MaLR 1012 1580 0 1399 173 96 34 chrX 66349021 66349374 -110624766 + THE1C LTR MaLR 1 375 0 2729 256 56 77 chrX 66349374 66350742 -110623398 - L1M1 LINE L1 -5517 2048 16 1721 164 60 9 chrX 66350775 66351067 -110623073 - L1M2 LINE L1 -508 5783 5469 395 62 0 16 chrX 66351067 66351131 -110623009 + (TA)n Simple_repeat Simple_repeat 1 63 0 1721 164 60 9 chrX 66351131 66351186 -110622954 - L1M2 LINE L1 -822 5469 5418 1504 212 49 9 chrX 66351205 66351530 -110622610 - MSTB1 LTR MaLR -89 343 6 3255 212 33 9 chrX 66351530 66352324 -110621816 - L1M2 LINE L1 -810 5336 4524 390 224 69 43 chrX 66352324 66352441 -110621699 - THE1C LTR MaLR -264 111 1 2846 144 4 17 chrX 66352441 66352906 -110621234 - THE1C-int LTR MaLR 0 1651 1193 352 202 71 0 chrX 66352908 66353007 -110621133 - L1M2 LINE L1 -1637 4509 4404 1790 150 13 13 chrX 66353081 66353395 -110620745 - L1PA16 LINE L1 -9 6157 5844 355 304 63 35 chrX 66353830 66354116 -110620024 + L1MD2 LINE L1 4539 4832 -1314 30 93 0 0 chrX 66354145 66354231 -110619909 + AT_rich Low_complexity Low_complexity 1 86 0 2923 199 29 3 chrX 66354485 66355108 -110619032 + L1MD2 LINE L1 5314 5952 -407 5317 128 29 11 chrX 66355108 66355927 -110618213 + LTR28-int LTR ERV1 6257 7090 -1 1224 174 81 0 chrX 66355928 66356163 -110617977 + LTR28 LTR ERV1 1 254 -766 2226 231 28 36 chrX 66356167 66356807 -110617333 - L1P LINE L1 -2178 3968 3334 1614 270 57 2 chrX 66356802 66357399 -110616741 - L1M2 LINE L1 -3344 2802 2173 * 1642 295 96 55 chrX 66357366 66358720 -110615420 - L1PA12 LINE L1 -4767 2814 1405 3567 157 62 16 chrX 66358743 66359423 -110614717 - MER50 LTR ERV1 -23 711 1 1579 132 26 1 chrX 66359425 66359764 -110614376 - MER50-int LTR ERV1 -10 7195 6812 * 6022 120 39 17 chrX 66359735 66361132 -110613008 - MER50-int LTR ERV1 -998 6207 3280 3317 155 56 18 chrX 66361130 66361981 -110612159 - MER50-int LTR ERV1 -2524 4251 2289 * 3048 156 2 15 chrX 66361969 66362605 -110611535 - MER50-int LTR ERV1 -3399 1481 1003 * 3424 156 26 29 chrX 66362606 66363255 -110610885 - MER50-int LTR ERV1 -5365 1840 1194 6123 137 21 8 chrX 66363256 66364266 -110609874 - MER50-int LTR ERV1 -6182 1023 1 3835 149 19 39 chrX 66364309 66364703 -110609437 - MER50 LTR ERV1 -23 711 336 1896 132 77 34 chrX 66364703 66365052 -110609088 - THE1B LTR MaLR 0 364 1 3835 149 19 39 chrX 66365052 66365382 -110608758 - MER50 LTR ERV1 -398 336 1 312 266 55 16 chrX 66365382 66365510 -110608630 - L1PA12 LINE L1 -5646 1935 1803 39 50 0 0 chrX 66365573 66365633 -110608507 + AT_rich Low_complexity Low_complexity 1 60 0 4024 158 35 23 chrX 66365903 66366183 -110607957 + Tigger1 DNA MER2_type 1 276 -2142 2082 101 3 14 chrX 66366183 66366490 -110607650 + AluSx SINE Alu 1 304 0 4024 158 35 23 chrX 66366490 66366978 -110607162 + Tigger1 DNA MER2_type 276 779 -1639 5318 150 12 2 chrX 66366978 66367859 -110606281 + MER49 LTR ERV1 1 890 -33 3554 149 5 11 chrX 66367891 66368513 -110605627 + Tigger1 DNA MER2_type 778 1395 -1023 3843 132 14 37 chrX 66368513 66369087 -110605053 + Tigger1 DNA MER2_type 1727 2313 -105 2083 146 3 0 chrX 66369087 66369388 -110604752 - AluSp SINE Alu -11 302 1 3843 132 14 37 chrX 66369388 66369399 -110604741 + Tigger1 DNA MER2_type 2313 2323 -95 2315 74 3 13 chrX 66369399 66369698 -110604442 - AluY SINE Alu -15 296 1 3843 132 14 37 chrX 66369698 66369818 -110604322 + Tigger1 DNA MER2_type 2323 2417 -1 675 234 182 9 chrX 66370236 66370450 -110603690 + MIR SINE MIR 2 252 -10 22 0 0 0 chrX 66370491 66370513 -110603627 + AT_rich Low_complexity Low_complexity 1 22 0 341 136 15 0 chrX 66370698 66370764 -110603376 + CT-rich Low_complexity Low_complexity 2 68 0 1299 213 61 37 chrX 66370765 66370853 -110603287 + MLT1D LTR MaLR 42 126 -379 1161 218 59 91 chrX 66370853 66371262 -110602878 + MSTD LTR MaLR 1 396 0 1299 213 61 37 chrX 66371262 66371548 -110602592 + MLT1D LTR MaLR 126 425 -80 261 274 32 11 chrX 66372286 66372381 -110601759 + CT-rich Low_complexity Low_complexity 5 101 0 2382 92 3 0 chrX 66372837 66373141 -110600999 - AluSg SINE Alu -5 305 1 805 229 117 10 chrX 66373975 66374180 -110599960 + MIR SINE MIR 36 262 0 392 260 97 26 chrX 66374213 66374367 -110599773 - MIR SINE MIR -50 212 48 549 323 86 0 chrX 66374817 66375003 -110599137 + MIR SINE MIR 58 259 -3 2515 69 0 0 chrX 66375131 66375434 -110598706 - AluY SINE Alu -8 303 1 257 339 30 49 chrX 66375487 66375642 -110598498 - MIR SINE MIR -58 150 10 238 308 13 0 chrX 66376040 66376131 -110598009 + T-rich Low_complexity Low_complexity 1 161 0 246 329 0 0 chrX 66377788 66377861 -110596279 + MIR SINE MIR 28 100 -108 601 210 0 7 chrX 66377977 66378120 -110596020 - L1MC4 LINE L1 -140 7902 7761 445 344 67 5 chrX 66378255 66378450 -110595690 + MIR SINE MIR 30 236 -26 393 165 82 21 chrX 66378578 66378675 -110595465 - MLT1K LTR MaLR 0 588 486 488 363 62 16 chrX 66378755 66379061 -110595079 - MLT1K LTR MaLR -242 346 27 3535 240 72 50 chrX 66379276 66380790 -110593350 + L1MEc LINE L1 38 1585 -4811 1847 149 133 11 chrX 66380814 66381189 -110592951 + MSTA LTR MaLR 8 428 0 8428 181 53 2 chrX 66381189 66382760 -110591380 + MSTA-int LTR MaLR 1 1651 0 661 104 0 19 chrX 66382767 66382873 -110591267 + MSTA LTR MaLR 1 104 -324 2001 144 120 13 chrX 66382878 66383261 -110590879 + MSTA LTR MaLR 5 428 0 1546 211 123 66 chrX 66383264 66384083 -110590057 + L1M1 LINE L1 2869 3810 -3936 273 209 191 55 chrX 66384175 66384285 -110589855 + MER63 DNA MER1_type 10 760 -302 377 277 73 43 chrX 66385684 66385846 -110588294 + MIR3 SINE MIR 11 178 -30 329 246 0 82 chrX 66385984 66386094 -110588046 - MIR SINE MIR -52 210 110 * 574 216 65 65 chrX 66386093 66386278 -110587862 - MIR SINE MIR -7 255 71 238 308 301 0 chrX 66386561 66386694 -110587446 - MER5B DNA MER1_type 0 178 6 672 264 24 0 chrX 66386698 66386865 -110587275 - MER5B DNA MER1_type -5 173 3 472 298 92 23 chrX 66386865 66387070 -110587070 + MIR SINE MIR 29 248 -14 674 232 93 0 chrX 66387134 66387285 -110586855 - MER5A DNA MER1_type 0 189 25 2119 131 13 0 chrX 66387358 66387663 -110586477 - AluSx SINE Alu -3 309 1 2216 93 38 0 chrX 66388476 66388767 -110585373 + AluSq SINE Alu 1 302 -11 2097 93 11 0 chrX 66388771 66389080 -110585060 + AluSp SINE Alu 3 314 0 2391 72 7 10 chrX 66389091 66389397 -110584743 + AluSq SINE Alu 1 305 -8 228 271 43 14 chrX 66389643 66389713 -110584427 + MIR SINE MIR 83 154 -108 2215 124 3 0 chrX 66389939 66390245 -110583895 + AluSx SINE Alu 1 307 -5 206 217 0 0 chrX 66390349 66390395 -110583745 + MIR3 SINE MIR 109 154 -54 456 280 101 26 chrX 66391327 66391516 -110582624 + MIR SINE MIR 46 248 -14 464 300 135 9 chrX 66391608 66391838 -110582302 + MIR SINE MIR 1 259 -3 382 215 215 10 chrX 66392608 66392753 -110581387 + MIR SINE MIR 42 259 -3 284 292 169 8 chrX 66392765 66392895 -110581245 + MIR SINE MIR 112 262 0 521 303 58 29 chrX 66394463 66394704 -110579436 + MIR SINE MIR 4 251 -11 278 185 0 62 chrX 66394715 66394780 -110579360 + MIR3 SINE MIR 108 168 -40 240 203 116 29 chrX 66394970 66395039 -110579101 - MIR SINE MIR -77 131 57 886 130 0 8 chrX 66397024 66397155 -110576985 + AluSq/x SINE Alu 1 130 -182 2329 188 2 100 chrX 66398131 66398420 -110575720 + LTR3b LTR ERVK 1 226 -211 2068 79 4 0 chrX 66398420 66398673 -110575467 + AluY SINE Alu 1 254 -57 2329 188 2 100 chrX 66398673 66398863 -110575277 + LTR3b LTR ERVK 226 433 -4 25 31 0 0 chrX 66399158 66399190 -110574950 + AT_rich Low_complexity Low_complexity 1 32 0 290 65 0 22 chrX 66399201 66399247 -110574893 + (TA)n Simple_repeat Simple_repeat 1 45 0 29066 108 15 59 chrX 66399410 66405854 -110568286 + L1PA7 LINE L1 12 6147 -7 324 291 60 43 chrX 66406356 66406473 -110567667 - MIR SINE MIR -137 125 7 2169 98 3 3 chrX 66406593 66406903 -110567237 - AluSx SINE Alu 0 310 1 1046 150 50 0 chrX 66407102 66407282 -110566858 + MER20 DNA MER1_type 31 219 0 22 35 0 0 chrX 66408185 66408214 -110565926 + AT_rich Low_complexity Low_complexity 1 29 0 265 314 12 35 chrX 66409123 66409209 -110564931 + MIR SINE MIR 43 126 -82 287 300 36 14 chrX 66409428 66409568 -110564572 - L1ME LINE L1 -333 5829 5687 252 0 0 0 chrX 66409568 66409596 -110564544 + (TG)n Simple_repeat Simple_repeat 2 29 0 1115 291 91 36 chrX 66409711 66410326 -110563814 - L2 LINE L2 -4 3309 2665 249 165 0 77 chrX 66410326 66410412 -110563728 - L1ME LINE L1 -577 5593 5519 351 0 0 0 chrX 66410484 66410523 -110563617 + (TA)n Simple_repeat Simple_repeat 1 39 0 287 231 0 15 chrX 66410526 66410591 -110563549 + L2 LINE L2 3203 3266 -6 * 443 259 8 53 chrX 66410574 66410705 -110563435 - MIR3 SINE MIR -16 192 68 4973 260 50 31 chrX 66410705 66412535 -110561605 + L1MA6 LINE L1 2 2941 -4624 * 4989 184 39 34 chrX 66412518 66413121 -110561019 + L1MA6 LINE L1 6037 6635 -1084 1559 154 4 19 chrX 66413121 66413380 -110560760 + AluJo SINE Alu 33 287 -25 4989 184 39 34 chrX 66413380 66414455 -110559685 + L1MA6 LINE L1 6635 7719 0 365 299 158 24 chrX 66414598 66414762 -110559378 - MER5A DNA MER1_type 0 189 4 4297 92 0 24 chrX 66416080 66416702 -110557438 + L1PA12 LINE L1 5555 6161 -7 2213 73 15 0 chrX 66417258 66417532 -110556608 + AluSg SINE Alu 1 278 -32 215 59 0 29 chrX 66417537 66417571 -110556569 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 282 255 115 19 chrX 66417585 66417742 -110556398 - L1ME4a LINE L1 -81 6040 5869 1202 81 0 0 chrX 66418057 66418217 -110555923 + L1MA1 LINE L1 6143 6302 0 370 315 164 13 chrX 66418269 66418649 -110555491 - L1ME4a LINE L1 -377 5744 5304 1900 282 86 47 chrX 66419149 66420201 -110553939 - L2 LINE L2 0 3313 2228 328 322 8 33 chrX 66420257 66420378 -110553762 - L2 LINE L2 -1433 1881 1764 5335 30 0 0 chrX 66420382 66421020 -110553120 - L1PA4 LINE L1 -1182 4964 4327 7530 25 1 0 chrX 66421020 66422223 -110551917 + L1PA4 LINE L1 4968 6172 0 2371 87 3 16 chrX 66422279 66422591 -110551549 - AluSp SINE Alu 0 313 6 250 133 0 0 chrX 66422631 66422676 -110551464 + L1PA6 LINE L1 6109 6153 -1 1232 239 133 3 chrX 66422680 66423040 -110551100 - L2 LINE L2 -1635 1679 1273 345 216 27 0 chrX 66423109 66423183 -110550957 + L1ME3A LINE L1 5610 5685 -436 998 180 30 25 chrX 66423184 66423384 -110550756 + AluJb SINE Alu 106 306 -6 821 197 63 117 chrX 66423425 66423776 -110550364 + L1ME3A LINE L1 5798 6129 -41 305 278 80 66 chrX 66423824 66423975 -110550165 + L1ME LINE L1 5695 5847 -274 2007 297 63 36 chrX 66424012 66425032 -110549108 - L2 LINE L2 0 3313 2251 338 311 78 52 chrX 66425043 66425426 -110548714 + L2 LINE L2 1802 2194 -1120 351 105 0 0 chrX 66425426 66425483 -110548657 - L1 LINE L1 -1308 4838 4782 371 261 144 27 chrX 66425518 66425740 -110548400 + L1MC/D LINE L1 5276 5523 -2285 600 328 56 0 chrX 66425907 66426157 -110547983 - L1MC/D LINE L1 -2089 5719 5456 26 30 0 0 chrX 66426164 66426197 -110547943 + AT_rich Low_complexity Low_complexity 1 33 0 855 102 0 0 chrX 66426197 66426324 -110547816 - L1MA1 LINE L1 0 7721 7595 14682 155 24 15 chrX 66426426 66431802 -110542338 - L1MA1 LINE L1 -100 7621 2191 306 113 97 0 chrX 66481805 66481867 -110492273 + L1MA3 LINE L1 6238 6305 0 197 354 108 15 chrX 66482155 66482285 -110491855 + L2 LINE L2 3161 3302 -11 21 0 0 0 chrX 66483377 66483398 -110490742 + AT_rich Low_complexity Low_complexity 1 21 0 357 173 0 0 chrX 66484057 66484109 -110490031 + MER5A DNA MER1_type 7 58 -131 4373 116 28 32 chrX 66484111 66484896 -110489244 - Tigger1 DNA MER2_type -1098 1320 539 824 162 68 29 chrX 66484899 66485207 -110488933 + Ricksha DNA DNA 1 410 -1636 * 3424 164 38 26 chrX 66485205 66485534 -110488606 + Ricksha DNA DNA 2500 2823 -437 2453 83 0 0 chrX 66485534 66485834 -110488306 + AluSx SINE Alu 1 300 -12 3424 164 38 26 chrX 66485834 66486285 -110487855 + Ricksha DNA DNA 2823 3247 -13 754 200 13 0 chrX 66486290 66486445 -110487695 - Tigger1 DNA MER2_type -1873 545 389 304 271 0 0 chrX 66486497 66486567 -110487573 - MIR SINE MIR -115 147 78 4315 100 34 39 chrX 66486768 66487537 -110486603 - L1PA13 LINE L1 -4 6159 5395 288 109 146 0 chrX 66487540 66487595 -110486545 - L1PA13 LINE L1 -968 5178 5116 1188 160 49 4 chrX 66487689 66487914 -110486226 - MER46A DNA MER2_type -1 235 1 7174 52 11 0 chrX 66490178 66491447 -110482693 - L1PA6 LINE L1 -13 6141 4867 1896 94 3 0 chrX 66491447 66491733 -110482407 - L1PA6 LINE L1 -1231 4915 4629 2247 72 3 0 chrX 66491734 66492041 -110482099 - L1PA6 LINE L1 -1931 4215 3908 848 119 0 0 chrX 66492163 66492289 -110481851 - L1P4 LINE L1 -508 5658 5533 19389 83 22 0 chrX 66492289 66494969 -110479171 + HERVK22 LTR ERVK 4083 6824 -13 414 0 0 0 chrX 66494969 66495015 -110479125 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 19389 83 22 0 chrX 66495015 66495028 -110479112 + HERVK22 LTR ERVK 6824 6835 -2 2061 181 83 35 chrX 66495030 66495512 -110478628 + LTR22 LTR ERVK 1 505 -4 13159 145 20 107 chrX 66495516 66498829 -110475311 - L1P LINE L1 -3108 3038 12 440 211 17 90 chrX 66498840 66499024 -110475116 - L1 LINE L1 -2927 3219 3048 1246 204 101 8 chrX 66499125 66499514 -110474626 - MLT2B1 LTR ERVL -41 479 1 181 250 0 0 chrX 66499544 66499580 -110474560 - MER5A DNA MER1_type -1 188 153 362 191 56 0 chrX 66499594 66499683 -110474457 + MLT2B2 LTR ERVL 415 508 -7 313 135 0 0 chrX 66499686 66499738 -110474402 + HERVL-B2 LTR ERVL 1 52 -5602 1776 157 10 7 chrX 66499738 66500044 -110474096 - L1PA15 LINE L1 0 6165 5859 28259 115 10 68 chrX 66500054 66506358 -110467782 + L1PA7 LINE L1 12 5934 -220 18596 83 5 11 chrX 66506483 66510425 -110463715 - L1P LINE L1 -2231 3915 11 21 0 0 0 chrX 66510491 66510512 -110463628 + AT_rich Low_complexity Low_complexity 1 21 0 315 364 29 0 chrX 66510568 66510708 -110463432 + LTR16A1 LTR ERVL 1 144 -313 2330 82 0 0 chrX 66510874 66511166 -110462974 + AluY SINE Alu 1 292 -19 15893 37 19 0 chrX 66511168 66513868 -110460272 + L1PA5 LINE L1 3444 6154 0 11387 181 19 4 chrX 66514504 66516622 -110457518 - L1M1 LINE L1 -5398 2167 18 4671 283 92 5 chrX 66516625 66518161 -110455979 - L2 LINE L2 -961 2353 684 332 250 103 37 chrX 66518784 66518920 -110455220 - L1M2a LINE L1 -6458 710 566 461 266 97 19 chrX 66520893 66521100 -110453040 - L1ME3A LINE L1 -219 5951 5729 1983 107 14 4 chrX 66521195 66521476 -110452664 - AluSx SINE Alu -12 300 17 349 298 0 12 chrX 66522222 66522306 -110451834 - MER5A DNA MER1_type -44 145 63 228 182 0 18 chrX 66522490 66522545 -110451595 + A-rich Low_complexity Low_complexity 2 55 0 216 0 0 0 chrX 66523300 66523324 -110450816 + (GA)n Simple_repeat Simple_repeat 2 25 0 878 236 54 0 chrX 66524068 66524271 -110449869 - MER20 DNA MER1_type -4 215 2 2790 13 0 0 chrX 66525130 66525438 -110448702 - AluY SINE Alu -3 308 1 2460 87 0 6 chrX 66526814 66527126 -110447014 - AluSp SINE Alu -3 310 1 4640 137 5 19 chrX 66527209 66528033 -110446107 - L1PA15 LINE L1 -2 6163 5352 1571 252 86 14 chrX 66529526 66530097 -110444043 - L1ME3 LINE L1 -234 5928 5317 * 27417 115 14 17 chrX 66530087 66536561 -110437579 - L1PA8 LINE L1 0 6487 5 542 196 51 0 chrX 66536563 66536701 -110437439 - L1ME3 LINE L1 -814 5332 5188 4776 134 5 17 chrX 66536702 66537532 -110436608 - L1PA15 LINE L1 -7 6158 5339 3156 242 30 33 chrX 66537525 66538591 -110435549 - L1PA13 LINE L1 -4390 2407 1329 * 2215 297 4 26 chrX 66538614 66539315 -110434825 - L1PA13 LINE L1 -6101 686 1 30 27 0 0 chrX 66540121 66540158 -110433982 + AT_rich Low_complexity Low_complexity 1 37 0 7550 30 11 0 chrX 66540187 66541114 -110433026 - L1PA4 LINE L1 0 6155 5227 5627 40 0 1 chrX 66541114 66541834 -110432306 + L1PA4 LINE L1 4515 5233 -913 6148 57 23 0 chrX 66542431 66543210 -110430930 + L1PA7 LINE L1 5343 6139 -15 453 347 75 0 chrX 66544313 66544486 -110429654 - MIR3 SINE MIR -7 201 16 746 179 8 8 chrX 66544743 66544877 -110429263 - MER82 DNA MER2_type -519 134 1 2031 139 31 17 chrX 66545263 66545587 -110428553 - L1PA16 LINE L1 -9 6157 5826 2345 99 0 0 chrX 66545587 66545890 -110428250 - AluY SINE Alu -8 303 1 2031 139 31 17 chrX 66545890 66545924 -110428216 - L1PA16 LINE L1 -340 5826 5794 525 365 35 121 chrX 66547039 66547669 -110426471 + L2 LINE L2 1990 2565 -749 22 70 0 0 chrX 66547900 66547943 -110426197 + AT_rich Low_complexity Low_complexity 1 43 0 2239 105 0 0 chrX 66548757 66549051 -110425089 + AluSx SINE Alu 1 294 -18 288 0 0 0 chrX 66549407 66549439 -110424701 + (TG)n Simple_repeat Simple_repeat 2 33 0 360 325 46 15 chrX 66549857 66550054 -110424086 - MIR SINE MIR -58 204 2 477 316 26 44 chrX 66550059 66550287 -110423853 - MIR SINE MIR -10 252 29 4549 115 21 9 chrX 66550455 66551226 -110422914 + L1MA3 LINE L1 5407 6186 -119 564 319 40 28 chrX 66552025 66552276 -110421864 + MIR SINE MIR 2 255 -7 2932 6 0 0 chrX 66552572 66552890 -110421250 - AluYb8 SINE Alu 0 318 1 353 297 33 14 chrX 66553192 66553431 -110420709 - L1M4 LINE L1 -4843 1801 1452 4753 168 10 22 chrX 66553518 66554461 -110419679 - L1MA7 LINE L1 -26 6265 5332 2325 85 23 10 chrX 66554461 66554768 -110419372 - AluSp SINE Alu -2 311 1 4753 168 10 22 chrX 66554768 66554785 -110419355 - L1MA7 LINE L1 -959 5332 5316 4787 147 13 4 chrX 66554806 66555632 -110418508 - L1MA6 LINE L1 -6 6294 5461 4182 121 21 6 chrX 66555645 66556347 -110417793 - L1MA5A LINE L1 -10 6287 5575 6960 71 17 54 chrX 66556347 66558897 -110415243 - SVA Other Other -518 1386 1 2829 174 36 14 chrX 66558901 66559755 -110414385 - L1MA5A LINE L1 -714 5583 4727 463 179 19 9 chrX 66559753 66559859 -110414281 + L1MA5A LINE L1 4629 4735 -1411 * 2621 198 29 3 chrX 66559854 66560439 -110413701 - L1MA6 LINE L1 -815 5331 4732 1004 143 31 5 chrX 66560439 66560635 -110413505 - Ricksha DNA DNA -10 3236 3036 6076 170 23 19 chrX 66560635 66561714 -110412426 - Ricksha DNA DNA -2145 1101 18 9509 211 22 7 chrX 66561715 66563957 -110410183 - L1MA6 LINE L1 -1386 4760 2485 531 184 20 0 chrX 66564415 66564513 -110409627 - MER20 DNA MER1_type -2 217 118 * 766 190 6 25 chrX 66564511 66564669 -110409471 - MER20 DNA MER1_type -36 183 29 2278 115 32 9 chrX 66564710 66565048 -110409092 - MER4A LTR ERV1 0 664 319 4542 122 52 35 chrX 66565060 66565894 -110408246 - MER4A-int LTR ERV1 -1914 4684 3837 1151 162 38 23 chrX 66565888 66566153 -110407987 - MER4A-int LTR ERV1 -2912 3686 3418 * 42650 32 24 1 chrX 66566155 66572171 -110401969 + L1PA3 LINE L1 2 6155 0 1834 140 104 77 chrX 66572173 66572731 -110401409 - MER4A-int LTR ERV1 -4394 2364 1792 6946 102 13 2 chrX 66572734 66573684 -110400456 - THE1-int LTR MaLR -453 1127 168 1197 169 116 62 chrX 66573684 66574296 -110399844 - MER4A-int LTR ERV1 -4300 2298 970 327 91 35 0 chrX 66574296 66574350 -110399790 + THE1A-int LTR MaLR 1532 1580 0 2620 83 14 0 chrX 66574350 66574700 -110399440 + THE1A LTR MaLR 1 355 0 2010 131 90 32 chrX 66574728 66575304 -110398836 - MER4A-int LTR ERV1 -5912 686 1 2699 101 15 25 chrX 66575307 66575715 -110398425 - MER4A LTR ERV1 0 664 261 670 111 0 10 chrX 66575715 66575814 -110398326 - MER4A LTR ERV1 -566 98 1 10869 239 18 15 chrX 66575814 66577587 -110396553 - L1PA12 LINE L1 -1600 5984 4189 189 0 0 0 chrX 66577587 66577608 -110396532 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 10869 239 18 15 chrX 66577608 66578999 -110395141 - L1PA12 LINE L1 -3395 4189 2805 1426 190 4 11 chrX 66579072 66579335 -110394805 - AluJo SINE Alu -21 291 31 238 155 211 14 chrX 66579992 66580063 -110394077 + MIR SINE MIR 178 262 0 1774 180 0 14 chrX 66580633 66580928 -110393212 - AluJo SINE Alu -21 291 1 2218 102 3 13 chrX 66582095 66582400 -110391740 - AluSc SINE Alu -7 302 1 2256 97 3 0 chrX 66583106 66583395 -110390745 + AluSg SINE Alu 1 290 -20 2602 181 64 85 chrX 66584168 66584955 -110389185 - LTR25 LTR ERV1 -3 788 1 12223 163 52 50 chrX 66584955 66586660 -110387480 - HUERS-P3b LTR ERV1 -11 6985 5284 2275 102 0 0 chrX 66586660 66586966 -110387174 + AluSg SINE Alu 1 306 0 12223 163 52 50 chrX 66586966 66587714 -110386426 - HUERS-P3b LTR ERV1 -1712 5284 4539 2743 82 3 0 chrX 66587714 66588068 -110386072 + THE1A LTR MaLR 1 355 0 12223 163 52 50 chrX 66588068 66589816 -110384324 - HUERS-P3b LTR ERV1 -2457 4539 2874 7268 241 33 29 chrX 66589809 66590220 -110383920 - LTR25-int LTR ERV1 -3885 3206 2798 * 2248 108 0 0 chrX 66590220 66590516 -110383624 - AluSx SINE Alu -16 296 1 7268 241 33 29 chrX 66590516 66592419 -110381721 - LTR25-int LTR ERV1 -4293 2798 810 1600 137 172 13 chrX 66592419 66592733 -110381407 - THE1B LTR MaLR 0 364 1 7268 241 33 29 chrX 66592733 66593547 -110380593 - LTR25-int LTR ERV1 -6281 810 1 3078 153 52 72 chrX 66593564 66594256 -110379884 - LTR25 LTR ERV1 0 794 117 2297 104 0 10 chrX 66594766 66595075 -110379065 + AluSx SINE Alu 1 306 -6 22 80 0 0 chrX 66595356 66595406 -110378734 + AT_rich Low_complexity Low_complexity 1 50 0 2420 90 0 3 chrX 66595687 66595997 -110378143 - AluY SINE Alu -2 309 1 3285 25 5 0 chrX 66597307 66597699 -110376441 - L1PA7 LINE L1 -1 6153 5760 236 213 0 0 chrX 66600008 66600055 -110374085 + (TA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chrX 66601033 66601054 -110373086 + AT_rich Low_complexity Low_complexity 1 21 0 229 259 0 0 chrX 66602354 66602408 -110371732 + L2 LINE L2 1187 1240 -2074 21 0 0 0 chrX 66608143 66608164 -110365976 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chrX 66609630 66609677 -110364463 + AT_rich Low_complexity Low_complexity 1 47 0 524 252 60 80 chrX 66610209 66610622 -110363518 - L1MC5 LINE L1 -168 7793 7389 21 36 0 0 chrX 66611302 66611330 -110362810 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 66611664 66611692 -110362448 + AT_rich Low_complexity Low_complexity 1 28 0 1465 48 24 39 chrX 66612746 66612953 -110361187 - L1PA8 LINE L1 0 6172 5969 2479 60 0 19 chrX 66613634 66613948 -110360192 + AluY SINE Alu 1 308 -3 478 227 131 17 chrX 66615001 66615177 -110358963 + L1M4 LINE L1 2 197 -6345 4536 151 44 15 chrX 66615177 66616045 -110358095 - L1MC1 LINE L1 -18 6315 5423 22 0 0 0 chrX 66616636 66616658 -110357482 + AT_rich Low_complexity Low_complexity 1 22 0 849 200 39 22 chrX 66618398 66618578 -110355562 - MLT2B2 LTR ERVL -328 187 5 357 237 81 29 chrX 66618619 66618792 -110355348 - L1MC4 LINE L1 -155 7887 7706 723 261 63 47 chrX 66618923 66619176 -110354964 - MIR SINE MIR 0 262 6 360 294 110 0 chrX 66619293 66619429 -110354711 + MIR SINE MIR 112 262 0 545 131 10 20 chrX 66620304 66620403 -110353737 + L1PA15 LINE L1 6068 6165 0 297 173 0 0 chrX 66620403 66620455 -110353685 - HERVL-B3 LTR ERVL -5602 52 1 410 180 56 0 chrX 66620458 66620547 -110353593 - MLT2B3 LTR ERVL -7 508 415 184 250 0 0 chrX 66620561 66620597 -110353543 + MER5A DNA MER1_type 153 188 -1 1443 185 75 106 chrX 66620627 66620928 -110353212 + MLT2B1 LTR ERVL 1 310 -210 477 0 0 0 chrX 66620928 66620981 -110353159 + (TC)n Simple_repeat Simple_repeat 2 54 0 359 55 0 18 chrX 66620980 66621035 -110353105 + (TA)n Simple_repeat Simple_repeat 1 54 0 * 1443 185 75 106 chrX 66620981 66621224 -110352916 + MLT2B1 LTR ERVL 310 476 -44 191 125 25 0 chrX 66621301 66621341 -110352799 + (TA)n Simple_repeat Simple_repeat 2 42 0 1472 246 30 21 chrX 66621441 66621770 -110352370 - MLT2B3 LTR ERVL -89 465 134 347 319 69 43 chrX 66621771 66621959 -110352181 - L1M2a LINE L1 -5350 1818 1626 27192 142 13 7 chrX 66622645 66628897 -110345243 + HUERS-P3 LTR ERV1 2526 8918 -1 3735 138 43 6 chrX 66628897 66629518 -110344622 + LTR9B LTR ERV1 1 644 0 448 292 79 0 chrX 66630161 66630363 -110343777 - L1MDa LINE L1 -3657 2883 2666 269 267 40 59 chrX 66630485 66630586 -110343554 - L1M4 LINE L1 -5833 709 611 491 230 130 4 chrX 66631198 66631428 -110342712 - L1MDa LINE L1 -3959 2581 2323 1183 280 34 20 chrX 66631429 66631786 -110342354 + LTR38-int LTR ERV1 17 378 -1408 4628 192 58 16 chrX 66631933 66632981 -110341159 + LTR57-int LTR ERVL 298 1389 -3954 800 166 184 39 chrX 66633008 66633291 -110340849 + LTR38-int LTR ERV1 1720 2043 -6077 2391 168 101 30 chrX 66633302 66633777 -110340363 + MER49 LTR ERV1 241 749 -174 377 367 28 24 chrX 66633818 66634066 -110340074 + LTR38-int LTR ERV1 6621 6869 -253 252 195 0 0 chrX 66634169 66634210 -110339930 + LTR38-int LTR ERV1 5515 5555 -31 1002 298 50 20 chrX 66634364 66634760 -110339380 + LTR38 LTR ERV1 149 556 0 5312 169 61 20 chrX 66634842 66638035 -110336105 - L1PA7 LINE L1 -3 6411 446 29 47 0 0 chrX 66638075 66638118 -110336022 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chrX 66638513 66638535 -110335605 + AT_rich Low_complexity Low_complexity 1 22 0 1249 255 101 31 chrX 66639116 66639701 -110334439 + L1MC4 LINE L1 6725 7350 -692 330 26 0 0 chrX 66639702 66639741 -110334399 + (CA)n Simple_repeat Simple_repeat 2 40 0 1877 138 7 3 chrX 66639783 66640079 -110334061 - AluSx SINE Alu -15 297 1 565 115 0 0 chrX 66640275 66640362 -110333778 + L1PB4 LINE L1 6068 6154 -2 698 300 30 21 chrX 66640371 66640604 -110333536 + MIR SINE MIR 28 262 0 236 282 98 37 chrX 66640751 66640914 -110333226 + L1MCa LINE L1 1440 1612 -4814 1994 130 30 0 chrX 66640914 66641213 -110332927 + AluSx SINE Alu 1 308 -4 635 274 29 59 chrX 66641240 66641729 -110332411 + L1MCa LINE L1 2006 2584 -4023 5884 141 99 7 chrX 66641808 66644637 -110329503 - L1PA12 LINE L1 -2 6166 3057 465 310 43 22 chrX 66644637 66644869 -110329271 + L1MCa LINE L1 3352 3588 -2838 4878 163 10 6 chrX 66644882 66646195 -110327945 + L1PB2 LINE L1 4720 6035 -116 2350 78 7 3 chrX 66646199 66646494 -110327646 + AluY SINE Alu 1 296 -15 1136 28 0 7 chrX 66646494 66646636 -110327504 - L1P LINE L1 -1573 4573 4433 6121 19 0 0 chrX 66646636 66647331 -110326809 + L1PA3 LINE L1 5455 6151 -4 663 169 8 0 chrX 66647360 66647490 -110326650 + L1PB2 LINE L1 6018 6148 -3 1553 229 15 20 chrX 66647498 66647953 -110326187 + L1 LINE L1 2172 2624 -3522 7137 263 55 15 chrX 66648084 66651900 -110322240 + L1PB3 LINE L1 2172 6147 -7 465 19 0 0 chrX 66651900 66651954 -110322186 + (TA)n Simple_repeat Simple_repeat 1 54 0 406 223 26 8 chrX 66651979 66652109 -110322031 + L1PB4 LINE L1 2383 2515 -3631 4422 235 20 15 chrX 66652153 66653428 -110320712 + L1PB4 LINE L1 4134 5414 -744 2086 168 42 35 chrX 66653428 66653973 -110320167 - MLT2A2 LTR ERVL 0 554 1 1555 225 21 0 chrX 66654031 66654409 -110319731 + L1PB4 LINE L1 5770 6155 -1 3345 268 80 31 chrX 66654421 66655646 -110318494 + L1MD2 LINE L1 3273 4626 -1520 2020 134 0 20 chrX 66655646 66655944 -110318196 + AluSx SINE Alu 1 292 -20 3345 268 80 31 chrX 66655944 66656634 -110317506 + L1MD2 LINE L1 4626 5281 -865 288 284 0 0 chrX 66656657 66656731 -110317409 + L1MD2 LINE L1 5922 5995 -364 1498 258 57 28 chrX 66656802 66657449 -110316691 + L1M4 LINE L1 4145 4810 -1336 248 111 22 0 chrX 66657449 66657494 -110316646 + (CA)n Simple_repeat Simple_repeat 1 46 0 4823 104 27 71 chrX 66657526 66658341 -110315799 - LTR19C LTR ERV1 0 779 1 6052 164 32 23 chrX 66658344 66659763 -110314377 - LTR19C-int LTR ERV1 -1 6995 2876 846 177 74 5 chrX 66659755 66659958 -110314182 - LTR19-int LTR ERV1 -3302 4235 4019 * 3734 135 10 19 chrX 66659951 66660715 -110313425 - LTR19-int LTR ERV1 -2499 4497 3728 1668 89 0 5 chrX 66660715 66660929 -110313211 - AluSc SINE Alu -15 294 82 3734 135 10 19 chrX 66660929 66660945 -110313195 - LTR19-int LTR ERV1 -3268 3728 1414 1061 122 41 0 chrX 66660992 66661164 -110312976 - LTR19C LTR ERV1 -600 179 1 1421 179 8 0 chrX 66661193 66661445 -110312695 - L1PB4 LINE L1 -7 6149 5896 974 207 1 20 chrX 66661491 66661816 -110312324 - AluJo SINE Alu -19 293 8 594 285 35 0 chrX 66661848 66662048 -110312092 + L1M4 LINE L1 4823 5029 -1117 5088 216 36 8 chrX 66662055 66663349 -110310791 + L1P LINE L1 3180 4510 -1636 238 288 0 0 chrX 66663381 66663440 -110310700 + MLT1K LTR MaLR 69 127 -461 327 208 9 0 chrX 66663453 66663515 -110310625 - MER72 LTR ERV1 -290 432 264 16553 124 27 123 chrX 66663544 66667268 -110306872 - L1P LINE L1 -2778 3368 1 1842 156 45 0 chrX 66667373 66667706 -110306434 - L1PA16 LINE L1 -6 6160 5813 376 275 92 19 chrX 66667711 66667918 -110306222 + L1M4b LINE L1 710 931 -5928 551 145 0 0 chrX 66668365 66668448 -110305692 + AluJ/FLAM SINE Alu 9 91 -221 18011 88 3 14 chrX 66668448 66670870 -110303270 + HERVL-A2 LTR ERVL 2978 5374 -280 6009 93 29 3 chrX 66670928 66672004 -110302136 - L1PA8A LINE L1 -3 6128 5047 6923 128 5 0 chrX 66672004 66673071 -110301069 + L1PA8A LINE L1 3976 5047 -1099 1855 118 10 0 chrX 66673071 66673368 -110300772 + HERVL-A2 LTR ERVL 5355 5654 0 3219 117 2 4 chrX 66673368 66673822 -110300318 + MLT2A2 LTR ERVL 1 453 0 463 264 123 0 chrX 66673933 66674063 -110300077 - L1ME3 LINE L1 -163 5999 5854 851 269 19 4 chrX 66674092 66674356 -110299784 - L1ME3 LINE L1 -377 5793 5526 1196 124 5 5 chrX 66674477 66674687 -110299453 + HERVL-A2 LTR ERVL 5445 5654 0 2564 152 20 7 chrX 66674687 66675134 -110299006 + MLT2A2 LTR ERVL 1 453 0 1531 248 120 24 chrX 66675250 66675866 -110298274 - L1ME3A LINE L1 -176 5994 5320 1541 151 51 7 chrX 66676288 66676580 -110297560 + L1MB1 LINE L1 5864 6168 0 181 296 37 0 chrX 66676612 66676666 -110297474 + MER5C DNA MER1_type 1 56 -268 1123 187 0 0 chrX 66676925 66677123 -110297017 + AluSg/x SINE Alu 95 292 -18 25 0 0 0 chrX 66677900 66677925 -110296215 + AT_rich Low_complexity Low_complexity 1 25 0 244 197 13 13 chrX 66678270 66678346 -110295794 + (TA)n Simple_repeat Simple_repeat 2 77 0 3205 305 42 10 chrX 66678357 66679805 -110294335 - L1ME3A LINE L1 -1149 4997 3504 2314 229 28 9 chrX 66679840 66680386 -110293754 + Tigger6b DNA MER2_type 1 556 -1041 2658 179 17 2 chrX 66680390 66680911 -110293229 + L1PA13 LINE L1 3261 3789 -2357 * 11075 25 1 0 chrX 66680895 66682204 -110291936 - L1P LINE L1 -916 5230 3921 7245 179 18 21 chrX 66682304 66684547 -110289593 + L1PA13 LINE L1 3902 6144 -19 2014 177 17 0 chrX 66684554 66684916 -110289224 + Tigger6b DNA MER2_type 546 913 -684 985 218 36 0 chrX 66684904 66685129 -110289011 + Tigger6b DNA MER2_type 1080 1312 -285 * 4769 189 31 13 chrX 66685150 66685298 -110288842 - L1MA8 LINE L1 -16 6275 6131 1770 143 0 85 chrX 66685298 66685627 -110288513 + AluSx SINE Alu 1 301 -11 4769 189 31 13 chrX 66685627 66686938 -110287202 - L1MA8 LINE L1 -160 6131 4773 213 65 0 0 chrX 66686938 66686969 -110287171 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 4769 189 31 13 chrX 66686969 66687377 -110286763 - L1MA8 LINE L1 -1518 4773 4374 392 305 12 18 chrX 66687627 66687794 -110286346 + L1PA12 LINE L1 2182 2347 -5234 * 13886 226 18 29 chrX 66687793 66693430 -110280710 + L1PA15 LINE L1 1235 6803 -13 5416 195 55 53 chrX 66693445 66694094 -110280046 - L1MA8 LINE L1 -1768 4378 3732 2287 107 0 0 chrX 66694094 66694403 -110279737 - AluSg SINE Alu -1 309 1 5416 195 55 53 chrX 66694403 66695394 -110278746 - L1MA8 LINE L1 -2414 3732 2734 294 29 0 0 chrX 66695876 66695911 -110278229 + (TA)n Simple_repeat Simple_repeat 1 35 0 3744 174 71 16 chrX 66696106 66696836 -110277304 - LTR1 LTR ERV1 0 785 16 548 232 65 19 chrX 66697376 66697531 -110276609 - MER103 DNA DNA 0 166 5 397 282 48 0 chrX 66697575 66697699 -110276441 + MIR SINE MIR 132 261 -1 637 360 43 24 chrX 66697997 66698369 -110275771 - LTR16B LTR ERVL 0 464 86 305 354 51 14 chrX 66698445 66698660 -110275480 - L2 LINE L2 -929 2385 2163 385 267 0 10 chrX 66698673 66698774 -110275366 + MLT1F1 LTR MaLR 1 100 -467 2288 244 37 0 chrX 66698834 66699427 -110274713 - L1MB7 LINE L1 -18 6166 5552 406 226 66 58 chrX 66699430 66699567 -110274573 - LTR52-int LTR ERVL -3349 207 70 * 446 304 22 0 chrX 66699535 66699673 -110274467 - LTR52-int LTR ERVL -3403 153 13 1240 235 59 32 chrX 66699685 66700093 -110274047 - LTR52 LTR ERVL -2 419 1 1030 331 30 18 chrX 66700157 66700595 -110273545 + L1MB8 LINE L1 2 444 -5697 284 309 0 0 chrX 66700697 66700781 -110273359 + L1M3c LINE L1 729 812 -5329 241 276 147 63 chrX 66700816 66701102 -110273038 + L1MB8 LINE L1 588 897 -5244 3441 180 46 49 chrX 66701204 66701975 -110272165 + LTR19C LTR ERV1 5 742 -37 288 53 0 0 chrX 66702392 66702430 -110271710 + (CA)n Simple_repeat Simple_repeat 2 39 0 3525 263 55 40 chrX 66702483 66705330 -110268810 + L1MB8 LINE L1 785 3631 -2579 23 97 0 0 chrX 66707842 66707914 -110266226 + AT_rich Low_complexity Low_complexity 1 72 0 577 248 0 7 chrX 66708069 66708218 -110265922 + L1MB8 LINE L1 3626 3773 -2437 * 2683 39 3 0 chrX 66708216 66708551 -110265589 + L1P LINE L1 4936 5271 -875 10524 47 6 6 chrX 66708651 66710739 -110263401 + L1PA4 LINE L1 4069 6155 0 4896 224 34 7 chrX 66710745 66711966 -110262174 + L1MB8 LINE L1 3769 5023 -1187 2010 177 0 32 chrX 66711968 66712369 -110261771 - L1PA15 LINE L1 -2 6163 5776 3587 57 2 0 chrX 66712469 66712927 -110261213 + L1PA4 LINE L1 5694 6152 -3 14790 43 0 6 chrX 66712944 66714971 -110259169 - L1P2 LINE L1 -594 5560 3548 3928 84 13 0 chrX 66714971 66715505 -110258635 - L1P2 LINE L1 -4882 1264 724 5865 263 35 32 chrX 66715616 66718161 -110255979 - L1PA12 LINE L1 -4044 3540 979 2678 236 33 13 chrX 66718159 66718849 -110255291 + L1MB8 LINE L1 5459 6162 -80 * 1608 139 14 24 chrX 66719897 66720185 -110253955 - L1MA3 LINE L1 0 6305 6021 4823 214 24 11 chrX 66720186 66721479 -110252661 - L1 LINE L1 -2745 4820 3512 28894 130 11 62 chrX 66721481 66727905 -110246235 - L1PA8 LINE L1 -76 6096 12 3446 128 90 28 chrX 66727913 66728600 -110245540 + MER4-int LTR ERV1 5864 6593 -5 1425 202 24 3 chrX 66728729 66729016 -110245124 + MER4A LTR ERV1 372 664 0 5308 165 32 1 chrX 66729018 66730275 -110243865 + L1PB2 LINE L1 4858 6149 -2 520 276 14 36 chrX 66730307 66730528 -110243612 + L1P LINE L1 2824 3039 -3107 7494 93 16 6 chrX 66730759 66731797 -110242343 - L1P LINE L1 -5095 1051 3 3020 143 8 4 chrX 66731819 66732321 -110241819 + L1PA13 LINE L1 5649 6152 -11 1336 208 38 3 chrX 66732375 66732721 -110241419 + Charlie2 DNA MER1_type 2470 2827 -35 1939 86 0 0 chrX 66732730 66733056 -110241084 + L1PA8 LINE L1 5893 6218 0 311 117 0 33 chrX 66733703 66733763 -110240377 - MER92C LTR ERV1 0 554 497 3545 137 49 11 chrX 66733896 66734529 -110239611 - MER51D LTR ERV1 0 657 1 307 152 0 0 chrX 66734606 66734652 -110239488 - MER92B LTR ERV1 -590 46 1 429 180 10 40 chrX 66734991 66735091 -110239049 - LTR37A LTR ERV1 -326 100 4 560 217 39 0 chrX 66735148 66735277 -110238863 - MER31-int LTR ERV1 -737 4199 4066 2074 154 72 0 chrX 66735277 66735679 -110238461 - L1MB4 LINE L1 0 6180 5750 487 151 42 76 chrX 66735742 66735861 -110238279 - MER92B LTR ERV1 -521 115 1 821 157 109 55 chrX 66736252 66736638 -110237502 + LTR7 LTR ERV1 1 450 0 12925 120 66 14 chrX 66736734 66737200 -110236940 + PABL_A-int LTR ERV1 1310 1750 -6066 2164 125 0 0 chrX 66737200 66737497 -110236643 + AluSx SINE Alu 11 307 -5 12925 120 66 14 chrX 66737497 66739338 -110234802 + PABL_A-int LTR ERV1 1750 3738 -4078 4437 101 5 5 chrX 66739320 66739964 -110234176 + PABL_A-int LTR ERV1 2212 2855 -2160 * 13167 261 56 27 chrX 66739964 66743818 -110230322 + L1PA15 LINE L1 460 5100 -2484 1553 189 4 0 chrX 66743818 66744083 -110230057 + AluJb SINE Alu 36 301 -11 13167 261 56 27 chrX 66744083 66745820 -110228320 + L1PA15 LINE L1 5100 6785 -799 2819 165 41 0 chrX 66745812 66746304 -110227836 + L1PA15 LINE L1 6998 7509 -94 * 237 65 0 0 chrX 66746320 66746351 -110227789 + (TA)n Simple_repeat Simple_repeat 2 32 0 1094 261 21 62 chrX 66746357 66746828 -110227312 + L1MC4 LINE L1 7591 8042 0 353 222 24 68 chrX 66746936 66747129 -110227011 - L1MDb LINE L1 -4916 1299 1118 1148 153 30 5 chrX 66747355 66747558 -110226582 - L1PA10 LINE L1 -6 6162 5955 387 113 56 0 chrX 66747608 66747679 -110226461 - L1MDb LINE L1 -5267 1129 1055 974 330 71 42 chrX 66747690 66748565 -110225575 - L1MDb LINE L1 -5453 943 44 599 303 60 17 chrX 66748714 66749117 -110225023 - L1M4c LINE L1 -4895 1489 1070 12805 141 9 1 chrX 66749117 66752033 -110222107 - L1PA10 LINE L1 0 6483 3547 1327 211 0 0 chrX 66752033 66752294 -110221846 - AluSx SINE Alu -7 305 45 862 253 0 9 chrX 66752310 66752539 -110221601 - L1PA10 LINE L1 -2925 3536 3310 6644 66 7 56 chrX 66752703 66753725 -110220415 + SVA Other Other 435 1407 0 15615 110 12 12 chrX 66753726 66756948 -110217192 + L1P LINE L1 3075 5098 -1048 281 221 32 0 chrX 66757049 66757144 -110216996 + L1PA15-16 LINE L1 2708 2805 -4044 22 35 0 0 chrX 66761106 66761135 -110213005 + AT_rich Low_complexity Low_complexity 1 29 0 4988 228 7 8 chrX 66762753 66764115 -110210025 + L1M2 LINE L1 2785 4150 -2698 19417 165 12 10 chrX 66764216 66765663 -110208477 - L1P LINE L1 -1451 4695 3253 1813 148 0 0 chrX 66765663 66765927 -110208213 - AluSx SINE Alu -4 308 45 19417 165 12 10 chrX 66765927 66768303 -110205837 - L1P LINE L1 -2893 3253 864 5267 210 24 8 chrX 66768305 66769420 -110204720 - L1PA10 LINE L1 -4742 1133 1 332 224 52 0 chrX 66769603 66769719 -110204421 - L1ME LINE L1 -404 5758 5637 636 277 50 42 chrX 66770921 66771181 -110202959 + MIR SINE MIR 1 262 0 658 184 0 0 chrX 66772329 66772443 -110201697 + Tigger7 DNA MER2_type 1 114 -619 4913 153 16 3 chrX 66772471 66773378 -110200762 - L1MA6 LINE L1 -5 6295 5377 2412 159 35 11 chrX 66773381 66773814 -110200326 + MSTB2 LTR MaLR 15 457 0 1803 198 5 27 chrX 66773814 66774254 -110199886 - L1MA6 LINE L1 -765 5381 4952 1295 189 12 0 chrX 66774266 66774510 -110199630 + Tigger7 DNA MER2_type 205 451 -282 1839 118 42 21 chrX 66775032 66775321 -110198819 + AluSx SINE Alu 1 295 -17 396 308 51 0 chrX 66775519 66775636 -110198504 - MER5B DNA MER1_type -55 123 1 9929 159 29 10 chrX 66776271 66781868 -110192272 - L1MA3 LINE L1 -1 7723 1972 1736 189 0 0 chrX 66781868 66782154 -110191986 + AluJb SINE Alu 1 286 -26 9929 159 29 10 chrX 66782154 66782285 -110191855 - L1MA3 LINE L1 -5752 1972 1845 942 237 4 7 chrX 66782394 66782672 -110191468 + L1P LINE L1 3168 3444 -2702 6323 75 16 52 chrX 66782686 66784590 -110189550 + SVA Other Other 15 1386 0 201 218 0 55 chrX 66785583 66785638 -110188502 - L2 LINE L2 -1 3271 3220 618 250 83 10 chrX 66787322 66787526 -110186614 - MER20 DNA MER1_type 0 219 1 481 75 50 0 chrX 66787628 66787708 -110186432 - L1 LINE L1 -1616 4530 4447 2025 124 10 7 chrX 66787871 66788170 -110185970 + AluSx SINE Alu 1 300 -12 21 36 0 0 chrX 66788656 66788684 -110185456 + AT_rich Low_complexity Low_complexity 1 28 0 842 323 118 51 chrX 66789767 66790612 -110183528 - L2 LINE L2 -342 2972 2071 331 297 27 27 chrX 66790621 66790769 -110183371 - L2 LINE L2 -1351 1963 1816 642 271 30 30 chrX 66791094 66791363 -110182777 + L1MEd LINE L1 561 829 -5290 2163 204 18 9 chrX 66791373 66791825 -110182315 + MSTB2 LTR MaLR 2 457 0 479 179 28 9 chrX 66792265 66792371 -110181769 + L1PB2 LINE L1 6036 6143 -8 2070 170 55 7 chrX 66792378 66792814 -110181326 - L1MB4 LINE L1 -160 6020 5564 6761 123 14 0 chrX 66792846 66793918 -110180222 + L1P LINE L1 11 1097 -5049 1021 164 18 0 chrX 66795593 66795758 -110178382 + FAM SINE Alu 1 168 -7 16261 35 1 1 chrX 66796285 66798353 -110175787 - L1P LINE L1 -743 5403 3335 21 0 0 0 chrX 66799233 66799254 -110174886 + AT_rich Low_complexity Low_complexity 1 21 0 33 66 0 0 chrX 66800370 66800431 -110173709 + AT_rich Low_complexity Low_complexity 1 61 0 26050 57 1 2 chrX 66801940 66805470 -110168670 + L1P LINE L1 1043 4571 -1575 603 211 0 0 chrX 66805570 66805684 -110168456 - MER2 DNA MER2_type -230 115 2 23 33 0 0 chrX 66806495 66806525 -110167615 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chrX 66806565 66806593 -110167547 + AT_rich Low_complexity Low_complexity 1 28 0 246 254 0 0 chrX 66806932 66806991 -110167149 + (TA)n Simple_repeat Simple_repeat 1 59 0 2249 71 57 0 chrX 66807027 66807310 -110166830 - AluY SINE Alu -12 299 1 668 122 122 8 chrX 66808136 66808267 -110165873 - L1MB3 LINE L1 0 6183 6038 2155 130 0 0 chrX 66810193 66810486 -110163654 + AluSg SINE Alu 3 295 -15 5323 125 30 23 chrX 66810713 66811316 -110162824 - Tigger3b DNA MER2_type -1797 1231 618 2243 118 0 0 chrX 66811316 66811613 -110162527 - AluSq SINE Alu -15 298 2 5323 125 30 23 chrX 66811613 66811953 -110162187 - Tigger3b DNA MER2_type -2410 618 282 658 185 0 0 chrX 66811965 66812084 -110162056 + FLAM_A SINE Alu 12 130 -12 1439 180 83 4 chrX 66812100 66812378 -110161762 - Tigger3b DNA MER2_type -928 303 4 302 257 211 18 chrX 66812419 66812528 -110161612 - MIR SINE MIR -63 145 16 325 264 169 50 chrX 66813036 66813297 -110160843 - L1MC5 LINE L1 -2 7959 7668 1323 136 56 8 chrX 66813319 66813570 -110160570 + AluSq SINE Alu 1 263 -50 26 0 0 0 chrX 66813743 66813769 -110160371 + AT_rich Low_complexity Low_complexity 1 26 0 225 159 0 0 chrX 66814395 66814439 -110159701 + (TA)n Simple_repeat Simple_repeat 2 45 0 1294 226 176 26 chrX 66814840 66815337 -110158803 + MER68 LTR ERV1 3 605 0 27 0 0 0 chrX 66815766 66815793 -110158347 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chrX 66816149 66816177 -110157963 + AT_rich Low_complexity Low_complexity 1 28 0 36 40 0 0 chrX 66817191 66817241 -110156899 + AT_rich Low_complexity Low_complexity 1 50 0 3783 141 44 71 chrX 66818207 66819008 -110155132 + MER4E LTR ERV1 1 779 0 7562 50 5 9 chrX 66819133 66820685 -110153455 + SVA Other Other 37 1386 0 1823 166 90 48 chrX 66820779 66821200 -110152940 + MER4E LTR ERV1 1 439 -327 189 0 0 0 chrX 66821200 66821221 -110152919 + (T)n Simple_repeat Simple_repeat 1 21 0 7077 39 10 3 chrX 66821321 66822842 -110151298 + L1PA4 LINE L1 4628 6155 0 216 0 0 0 chrX 66822998 66823022 -110151118 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 1601 152 0 22 chrX 66823022 66823292 -110150848 - AluJb SINE Alu -48 264 1 21 0 0 0 chrX 66823387 66823408 -110150732 + AT_rich Low_complexity Low_complexity 1 21 0 1724 165 50 3 chrX 66823802 66824123 -110150017 + MER44D DNA MER2_type 3 608 -1 2290 281 78 47 chrX 66824155 66825240 -110148900 + L2 LINE L2 2067 3184 -129 289 253 126 0 chrX 66825317 66825412 -110148728 + L1ME4a LINE L1 5994 6100 -21 865 228 65 0 chrX 66825700 66825884 -110148256 - MER58A DNA MER1_type -28 196 1 1966 135 7 0 chrX 66825918 66826200 -110147940 - AluSx SINE Alu -28 284 1 990 166 52 10 chrX 66826247 66826440 -110147700 - MER2 DNA MER2_type 0 345 145 9588 113 15 37 chrX 66827737 66829226 -110144914 + THE1C-int LTR MaLR 118 1574 -6 1566 159 71 41 chrX 66829232 66829596 -110144544 + THE1C LTR MaLR 1 375 0 27 0 0 0 chrX 66829712 66829739 -110144401 + AT_rich Low_complexity Low_complexity 1 27 0 250 273 11 34 chrX 66829773 66829861 -110144279 + GA-rich Low_complexity Low_complexity 3 88 0 348 212 94 12 chrX 66830676 66830761 -110143379 - MIR SINE MIR -79 183 92 405 0 0 0 chrX 66830795 66830840 -110143300 + (CA)n Simple_repeat Simple_repeat 2 46 0 259 309 77 48 chrX 66831323 66831491 -110142649 - MER5B DNA MER1_type -4 174 2 543 297 0 11 chrX 66831598 66831780 -110142360 - L1PB4 LINE L1 -2 6154 5975 3130 155 47 7 chrX 66832065 66832602 -110141538 - L1M1 LINE L1 -6289 1276 719 1167 149 5 0 chrX 66832605 66832799 -110141341 + L1P5 LINE L1 1 195 -6668 12214 188 58 31 chrX 66832799 66833904 -110140236 + L1P5 LINE L1 1106 2180 -4682 1603 187 7 48 chrX 66833904 66834214 -110139926 - AluSx SINE Alu -13 299 3 12214 188 58 31 chrX 66834214 66837715 -110136425 + L1P5 LINE L1 2180 6056 -806 2834 103 12 0 chrX 66837884 66838302 -110135838 + L1P5 LINE L1 6085 6507 -360 254 109 0 0 chrX 66838323 66838369 -110135771 + LTR66 LTR ERVL 394 439 -171 238 255 0 43 chrX 66838383 66838477 -110135663 - L1MC4 LINE L1 -1339 6703 6614 2553 86 13 5 chrX 66838484 66838856 -110135284 + L1PB1 LINE L1 5777 6151 0 4432 153 25 4 chrX 66838874 66839581 -110134559 - L1M1 LINE L1 -6828 737 16 611 270 110 22 chrX 66839585 66840153 -110133987 - L1MEd LINE L1 -4754 1556 902 268 83 42 0 chrX 66840153 66840201 -110133939 + (TA)n Simple_repeat Simple_repeat 2 51 0 190 314 314 10 chrX 66840592 66840694 -110133446 + L2 LINE L2 3126 3258 -14 201 204 20 0 chrX 66841628 66841677 -110132463 - MIR3 SINE MIR -9 199 150 502 261 15 15 chrX 66842201 66842335 -110131805 - MIR3 SINE MIR -65 143 10 1013 125 6 0 chrX 66842421 66842589 -110131551 - L1MB4 LINE L1 -6 6174 6006 3834 113 30 8 chrX 66842593 66843187 -110130953 + L1PB2 LINE L1 5465 6071 -80 4211 151 35 7 chrX 66843289 66844042 -110130098 - L1PA16 LINE L1 -136 6030 5257 373 335 56 12 chrX 66844045 66844206 -110129934 - MIR SINE MIR -81 181 14 2324 92 0 0 chrX 66844265 66844560 -110129580 + AluSx SINE Alu 1 295 -17 1998 114 4 7 chrX 66844770 66845050 -110129090 + AluSx SINE Alu 1 279 -33 212 0 36 0 chrX 66845054 66845082 -110129058 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 203 241 52 17 chrX 66845123 66845181 -110128959 - L3b LINE CR1 -312 1271 1212 247 283 0 0 chrX 66845223 66845283 -110128857 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 1096 209 156 33 chrX 66846210 66846292 -110127848 - MER2 DNA MER2_type -7 338 267 2166 112 0 0 chrX 66846292 66846606 -110127534 + AluSp SINE Alu 1 314 0 1096 209 156 33 chrX 66846606 66846823 -110127317 - MER2 DNA MER2_type -78 267 1 2344 88 10 3 chrX 66847103 66847410 -110126730 + AluSx SINE Alu 1 309 -3 1191 113 6 23 chrX 66848420 66848597 -110125543 - AluSp SINE Alu -5 308 135 1900 125 17 41 chrX 66848599 66848944 -110125196 + MER4E LTR ERV1 441 777 -2 1019 234 28 5 chrX 66849802 66850020 -110124120 - MER58A DNA MER1_type -1 223 1 2589 169 37 4 chrX 66850532 66851017 -110123123 - L1MB4 LINE L1 -25 6155 5655 25 31 0 0 chrX 66852155 66852187 -110121953 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrX 66852390 66852419 -110121721 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 66853569 66853599 -110120541 + AT_rich Low_complexity Low_complexity 1 30 0 6079 129 47 20 chrX 66854140 66855214 -110118926 + Tigger3b DNA MER2_type 1 1102 -129 1332 162 17 14 chrX 66856098 66856388 -110117752 - AluSg SINE Alu -7 293 3 189 167 0 125 chrX 66857537 66857585 -110116555 + L3 LINE CR1 1530 1571 -6 205 290 74 0 chrX 66859926 66860088 -110114052 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 206 274 16 59 chrX 66860000 66860186 -110113954 + (CATA)n Simple_repeat Simple_repeat 3 180 0 * 240 244 70 23 chrX 66860154 66860326 -110113814 + (TA)n Simple_repeat Simple_repeat 1 180 0 624 318 153 30 chrX 66861521 66861908 -110112232 + L2 LINE L2 2551 2978 -294 328 252 107 33 chrX 66861914 66862111 -110112029 - L2 LINE L2 -5 3308 3014 426 395 51 18 chrX 66862112 66862388 -110111752 + L2 LINE L2 2987 3271 -1 1972 120 0 7 chrX 66864325 66864616 -110109524 + L1MB7 LINE L1 5523 5811 -367 513 0 0 0 chrX 66864616 66864673 -110109467 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 1105 163 108 29 chrX 66864687 66864927 -110109213 + L1MB7 LINE L1 5925 6183 -1 1037 244 137 19 chrX 66865114 66865529 -110108611 - L1ME LINE L1 -298 5823 5362 22 0 0 0 chrX 66865787 66865809 -110108331 + AT_rich Low_complexity Low_complexity 1 22 0 2483 46 7 3 chrX 66865835 66866139 -110108001 + AluY SINE Alu 1 305 -6 1650 115 95 13 chrX 66866170 66866474 -110107666 + MER46B DNA MER2_type 33 236 0 243 316 0 13 chrX 66866742 66866818 -110107322 + GA-rich Low_complexity Low_complexity 2 76 0 2118 89 31 7 chrX 66867074 66867365 -110106775 + AluSc SINE Alu 1 298 -11 6183 34 1 4 chrX 66867915 66868670 -110105470 + L1PA5 LINE L1 5395 6147 -7 601 261 199 28 chrX 66869539 66869861 -110104279 - L2 LINE L2 -78 3235 2773 2517 64 0 0 chrX 66869864 66870162 -110103978 + AluSp SINE Alu 1 298 -15 3058 31 0 24 chrX 66870779 66871162 -110102978 + L1PA5 LINE L1 5775 6148 -6 2286 158 73 5 chrX 66871466 66871865 -110102275 + MSTC LTR MaLR 3 428 0 2015 167 39 11 chrX 66872242 66872489 -110101651 - L1MB7 LINE L1 -9 6986 6720 1389 178 0 8 chrX 66872489 66872730 -110101410 - MER8 DNA MER2_type 0 239 1 2015 167 39 11 chrX 66872730 66872924 -110101216 - L1MB7 LINE L1 -275 6720 6533 7763 215 76 12 chrX 66873205 66873856 -110100284 - L1MB7 LINE L1 -560 6435 5827 180 0 0 0 chrX 66873856 66873876 -110100264 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7763 215 76 12 chrX 66873876 66875401 -110098739 - L1MB7 LINE L1 -1168 5827 4070 1763 190 33 46 chrX 66875401 66875796 -110098344 + MLT1B LTR MaLR 1 390 0 7763 215 76 12 chrX 66875796 66876134 -110098006 - L1MB7 LINE L1 -2925 4070 3755 469 161 37 0 chrX 66876153 66876234 -110097906 - Tigger7 DNA MER2_type -9 2478 2395 * 1388 177 72 4 chrX 66876232 66876481 -110097659 - Tigger7 DNA MER2_type -465 268 3 2199 233 98 11 chrX 66876483 66877235 -110096905 - L1MB7 LINE L1 -3219 3738 2921 2265 238 134 11 chrX 66877238 66877932 -110096208 - L1MB7 LINE L1 -5447 1412 634 328 234 138 35 chrX 66878039 66878184 -110095956 - L1MB7 LINE L1 -6695 164 5 282 339 24 24 chrX 66878408 66878532 -110095608 - MIR3 SINE MIR -32 176 53 508 301 85 0 chrX 66878553 66878706 -110095434 + MIR SINE MIR 9 174 -88 224 30 30 0 chrX 66878823 66878856 -110095284 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2113 105 3 3 chrX 66879816 66880102 -110094038 + AluSq SINE Alu 8 293 -20 518 267 85 55 chrX 66880592 66880828 -110093312 + MIR SINE MIR 11 253 -9 29 28 0 0 chrX 66881892 66881928 -110092212 + AT_rich Low_complexity Low_complexity 1 36 0 1452 141 30 38 chrX 66882342 66882604 -110091536 - AluJb SINE Alu -52 260 1 405 71 0 0 chrX 66884208 66884264 -110089876 + Alu SINE Alu 1 56 -257 399 170 30 0 chrX 66884264 66884364 -110089776 + GA-rich Low_complexity Low_complexity 2 104 0 1099 167 17 90 chrX 66885294 66885582 -110088558 - L1 LINE L1 -1792 4354 4088 868 144 0 0 chrX 66885582 66885707 -110088433 - AluSq/x SINE Alu -187 125 1 576 162 19 0 chrX 66885707 66885812 -110088328 - L1 LINE L1 -2156 3990 3884 467 92 0 0 chrX 66885812 66885877 -110088263 - AluS SINE Alu -247 65 1 4333 211 180 19 chrX 66885877 66887214 -110086926 - L1 LINE L1 -2414 3732 2180 4947 173 41 12 chrX 66887215 66888422 -110085718 + L1MA7 LINE L1 4549 5810 -481 330 26 0 0 chrX 66888422 66888461 -110085679 + (CA)n Simple_repeat Simple_repeat 2 40 0 4947 173 41 12 chrX 66888461 66888957 -110085183 + L1MA7 LINE L1 5810 6290 -1 4830 180 25 46 chrX 66889136 66889546 -110084594 - L1MA4A LINE L1 -23 6280 5863 432 0 0 0 chrX 66889546 66889594 -110084546 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1504 150 4 8 chrX 66889596 66889842 -110084298 - AluJo SINE Alu -31 281 37 4830 180 25 46 chrX 66889842 66890229 -110083911 - L1MA4A LINE L1 -441 5862 5468 2114 120 17 3 chrX 66890229 66890530 -110083610 - AluSx SINE Alu -7 305 1 4830 180 25 46 chrX 66890530 66890838 -110083302 - L1MA4A LINE L1 -835 5468 5155 2126 117 7 3 chrX 66890838 66891136 -110083004 - AluSq SINE Alu -14 299 1 4830 180 25 46 chrX 66891136 66891937 -110082203 - L1MA4A LINE L1 -1148 5155 4285 25 31 0 0 chrX 66892892 66892924 -110081216 + AT_rich Low_complexity Low_complexity 1 32 0 376 84 14 14 chrX 66894900 66894971 -110079169 + (TG)n Simple_repeat Simple_repeat 1 71 0 208 223 11 11 chrX 66895459 66895553 -110078587 + CT-rich Low_complexity Low_complexity 2 95 0 205 310 0 0 chrX 66895809 66895867 -110078273 + CT-rich Low_complexity Low_complexity 3 60 0 1472 277 117 50 chrX 66896242 66897342 -110076798 - L2 LINE L2 0 3313 2005 1375 209 30 41 chrX 66897388 66897781 -110076359 + MLT1B LTR MaLR 1 389 -1 334 338 72 31 chrX 66897785 66898007 -110076133 - L2 LINE L2 -723 2591 2361 26 0 0 0 chrX 66898013 66898039 -110076101 + AT_rich Low_complexity Low_complexity 1 26 0 25 65 0 0 chrX 66898697 66898743 -110075397 + AT_rich Low_complexity Low_complexity 1 46 0 1574 176 20 23 chrX 66899385 66899691 -110074449 - AluJo SINE Alu -7 305 1 968 273 83 53 chrX 66901336 66901984 -110072156 + L1ME4a LINE L1 5419 6115 -6 977 9 0 0 chrX 66904369 66904480 -110069660 - L1PA5 LINE L1 -309 5846 5736 2441 29 6 26 chrX 66904480 66904788 -110069352 + L1PA5 LINE L1 5839 6145 -9 41076 31 22 1 chrX 67104854 67110878 -109863262 - L1HS LINE L1 -2 6153 3 826 41 0 0 chrX 67112070 67112194 -109861946 + L1PA4 LINE L1 6046 6169 0 2399 59 0 0 chrX 67112388 67112675 -109861465 + AluY SINE Alu 1 287 -24 210 105 0 0 chrX 67112678 67112716 -109861424 + (TTAA)n Simple_repeat Simple_repeat 3 40 0 500 221 0 39 chrX 67114419 67114523 -109859617 - MIR SINE MIR -160 102 3 189 74 0 0 chrX 67115165 67115192 -109858948 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chrX 67115192 67115214 -109858926 + AT_rich Low_complexity Low_complexity 1 22 0 224 308 25 67 chrX 67115304 67115424 -109858716 + MIR SINE MIR 31 145 -63 642 296 48 36 chrX 67115567 67115817 -109858323 - MIR SINE MIR -1 261 9 293 140 333 11 chrX 67117004 67117097 -109857043 + MIR3 SINE MIR 85 207 -1 26 0 0 0 chrX 67118390 67118416 -109855724 + AT_rich Low_complexity Low_complexity 1 26 0 1115 229 8 32 chrX 67118468 67118721 -109855419 + MER45C DNA AcHobo 1 247 -706 372 280 42 56 chrX 67118779 67118922 -109855218 + MER45C DNA AcHobo 390 530 -423 764 221 93 29 chrX 67119036 67119240 -109854900 + MER45C DNA AcHobo 737 953 0 374 317 37 12 chrX 67119329 67119474 -109854666 + MIR SINE MIR 3 151 -57 975 237 14 14 chrX 67119598 67119817 -109854323 + MER20 DNA MER1_type 1 219 0 216 0 0 0 chrX 67120900 67120924 -109853216 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 306 284 27 68 chrX 67121325 67121473 -109852667 - MIR SINE MIR -85 177 36 979 242 31 4 chrX 67121520 67121747 -109852393 + MER45C DNA AcHobo 4 236 -717 906 230 10 15 chrX 67121740 67121944 -109852196 + MER45C DNA AcHobo 751 953 0 * 863 269 32 47 chrX 67122130 67122383 -109851757 + MIR SINE MIR 3 251 -11 222 284 40 0 chrX 67122793 67122867 -109851273 + MIR SINE MIR 184 260 -2 190 200 243 29 chrX 67123290 67123360 -109850780 - MIR3 SINE MIR -42 166 82 226 323 0 21 chrX 67123738 67123831 -109850309 - L3 LINE CR1 -332 1245 1155 23 0 0 0 chrX 67125548 67125571 -109848569 + AT_rich Low_complexity Low_complexity 1 23 0 2135 125 0 6 chrX 67125958 67126269 -109847871 - AluSx SINE Alu -3 309 1 198 200 0 0 chrX 67126469 67126509 -109847631 - L2 LINE L2 -13 3300 3261 390 260 203 8 chrX 67126881 67127004 -109847136 + L2 LINE L2 3162 3308 -5 2307 104 0 10 chrX 67127092 67127400 -109846740 - AluSc SINE Alu -4 305 1 457 307 73 13 chrX 67127723 67127873 -109846267 - L2 LINE L2 -2 3270 3112 424 330 98 22 chrX 67128102 67128326 -109845814 + MIR SINE MIR 6 246 -16 191 242 113 16 chrX 67128341 67128403 -109845737 - L2 LINE L2 0 3313 3246 378 0 0 0 chrX 67128770 67128812 -109845328 + (CA)n Simple_repeat Simple_repeat 1 42 0 570 321 36 8 chrX 67128859 67129111 -109845029 + MIR SINE MIR 2 260 -2 1690 158 0 0 chrX 67130091 67130357 -109843783 - AluSx SINE Alu -10 302 37 1539 184 59 14 chrX 67131738 67132026 -109842114 + AluSx SINE Alu 1 301 -11 727 294 50 5 chrX 67132313 67132534 -109841606 - MIR SINE MIR 0 262 32 275 152 0 0 chrX 67132576 67132622 -109841518 + L2 LINE L2 3268 3313 0 689 157 41 14 chrX 67133062 67133209 -109840931 - L1MD1 LINE L1 -1 6241 6091 800 202 0 9 chrX 67134383 67134591 -109839549 + AluJb SINE Alu 1 293 -19 220 105 0 26 chrX 67134958 67134996 -109839144 + L2 LINE L2 3232 3268 -4 22 0 0 0 chrX 67138903 67138925 -109835215 + AT_rich Low_complexity Low_complexity 1 22 0 252 111 0 0 chrX 67140789 67140834 -109833306 + (GA)n Simple_repeat Simple_repeat 2 46 0 243 203 0 0 chrX 67142123 67142182 -109831958 + (CA)n Simple_repeat Simple_repeat 2 60 0 34 0 0 0 chrX 67142185 67142219 -109831921 + AT_rich Low_complexity Low_complexity 1 34 0 749 189 4 27 chrX 67143551 67143818 -109830322 + GA-rich Low_complexity Low_complexity 1 260 0 201 74 0 0 chrX 67146936 67146963 -109827177 + (TC)n Simple_repeat Simple_repeat 1 27 0 497 140 21 0 chrX 67147640 67147733 -109826407 + CT-rich Low_complexity Low_complexity 2 96 0 185 91 0 30 chrX 67150899 67150932 -109823208 + (TG)n Simple_repeat Simple_repeat 1 32 0 351 0 0 0 chrX 67150966 67151005 -109823135 + (CA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chrX 67151004 67151026 -109823114 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 29 0 0 0 chrX 67155763 67155792 -109818348 + AT_rich Low_complexity Low_complexity 1 29 0 567 303 53 0 chrX 67157902 67158090 -109816050 + MIR SINE MIR 64 261 -1 423 244 160 27 chrX 67158570 67158832 -109815308 - L1ME4a LINE L1 -82 6039 5743 207 0 0 0 chrX 67158926 67158949 -109815191 + (CA)n Simple_repeat Simple_repeat 2 24 0 506 316 104 59 chrX 67158967 67159220 -109814920 - L3 LINE CR1 -840 737 497 2044 153 3 15 chrX 67159220 67159561 -109814579 - MER1B DNA MER1_type 0 337 1 506 316 104 59 chrX 67159561 67159836 -109814304 - L3 LINE CR1 -1080 497 185 22 0 0 0 chrX 67160228 67160250 -109813890 + AT_rich Low_complexity Low_complexity 1 22 0 353 324 54 54 chrX 67160702 67160906 -109813234 + MIR SINE MIR 32 235 -27 329 305 0 11 chrX 67161455 67161550 -109812590 - MIR SINE MIR -90 172 79 1202 230 60 36 chrX 67161836 67162292 -109811848 - L1ME3A LINE L1 -204 5966 5511 433 278 56 26 chrX 67162325 67162591 -109811549 - L1ME3A LINE L1 -813 5333 5060 686 233 67 0 chrX 67162592 67162742 -109811398 - AluJb SINE Alu -20 292 133 856 254 122 46 chrX 67162759 67163012 -109811128 - L1ME3A LINE L1 -1104 5042 4810 1570 173 9 60 chrX 67163012 67163330 -109810810 - AluJo SINE Alu -8 304 3 856 254 122 46 chrX 67163330 67163555 -109810585 - L1ME3A LINE L1 -1336 4810 4516 243 0 0 0 chrX 67163555 67163582 -109810558 + (TC)n Simple_repeat Simple_repeat 2 28 0 856 254 122 46 chrX 67163582 67163642 -109810498 - L1ME3A LINE L1 -1630 4516 4462 360 345 36 10 chrX 67163659 67163853 -109810287 - L1ME3A LINE L1 -1778 4368 4170 1480 267 162 13 chrX 67164337 67164964 -109809176 + LTR50 LTR ERVL 6 472 -51 718 289 121 13 chrX 67164974 67165361 -109808779 - L1ME3A LINE L1 -1989 4157 3729 1329 13 0 0 chrX 67165372 67165523 -109808617 - L1PA2 LINE L1 -8 6147 5997 362 167 48 0 chrX 67165527 67165611 -109808529 - L1MB3 LINE L1 -9 6174 6087 6251 211 24 22 chrX 67165618 67169676 -109804464 - L1MA4 LINE L1 -282 6200 953 1205 122 16 0 chrX 67169702 67169891 -109804249 - L1PB2 LINE L1 -1 6150 5959 239 234 0 0 chrX 67169902 67169949 -109804191 + L1 LINE L1 4165 4211 -1935 6414 221 30 4 chrX 67169979 67171487 -109802653 + L1 LINE L1 2849 4395 -1751 280 0 0 48 chrX 67171488 67171530 -109802610 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 4216 214 44 18 chrX 67171533 67172460 -109801680 - L1MA4 LINE L1 -4369 959 9 965 222 5 5 chrX 67172519 67172747 -109801393 - L1MB1 LINE L1 -4 6185 5959 1341 201 84 3 chrX 67172768 67173111 -109801029 - L1M4c LINE L1 -2332 4050 3680 1682 167 42 26 chrX 67173122 67173428 -109800712 + THE1B LTR MaLR 52 362 -2 278 213 0 16 chrX 67173433 67173494 -109800646 + L1M4 LINE L1 4028 4087 -2059 2189 252 47 62 chrX 67173502 67174303 -109799837 - L1M4c LINE L1 -2729 3653 2867 1736 173 3 0 chrX 67174303 67174617 -109799523 - AluJb SINE Alu 0 315 1 2189 252 47 62 chrX 67174617 67174803 -109799337 - L1M4c LINE L1 -3515 2867 2680 * 9121 191 41 34 chrX 67174799 67178089 -109796051 - L1PA15 LINE L1 -17 6799 3491 5189 230 26 14 chrX 67178091 67180120 -109794020 - L1PA15 LINE L1 -3489 3308 1245 749 256 14 5 chrX 67180126 67180349 -109793791 - L1M4c LINE L1 -3688 2694 2470 1092 223 0 4 chrX 67180364 67180593 -109793547 - MER46A DNA MER2_type -1 235 8 2671 269 118 22 chrX 67180619 67182066 -109792074 - L1M4c LINE L1 -3947 2437 853 663 167 0 0 chrX 67182437 67182551 -109791589 - L1PA16 LINE L1 -4 6162 6049 4270 149 18 6 chrX 67182551 67183262 -109790878 + L1PA16 LINE L1 5334 6053 -113 495 266 30 30 chrX 67183245 67183448 -109790692 - L1 LINE L1 -5041 1100 898 * 470 323 81 65 chrX 67183740 67184198 -109789942 - L1 LINE L1 -5674 467 3 1445 287 81 31 chrX 67184204 67185818 -109788322 - L1MEc LINE L1 -2470 3745 2072 6067 81 8 23 chrX 67185837 67186693 -109787447 + L1PA8A LINE L1 5288 6130 -1 254 196 36 0 chrX 67186825 67186881 -109787259 + CT-rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chrX 67186988 67187010 -109787130 + AT_rich Low_complexity Low_complexity 1 22 0 2248 96 3 16 chrX 67187106 67187418 -109786722 - AluY SINE Alu -3 308 1 384 269 77 23 chrX 67187418 67187539 -109786601 - L1MEc LINE L1 -4752 1644 1514 4711 45 3 0 chrX 67187547 67188123 -109786017 + L1PA5 LINE L1 5576 6153 -1 24 0 0 0 chrX 67188226 67188250 -109785890 + AT_rich Low_complexity Low_complexity 1 24 0 468 323 63 25 chrX 67188379 67188931 -109785209 - L1MEc LINE L1 -4971 1234 662 762 182 8 0 chrX 67190861 67190993 -109783147 - FLAM_A SINE Alu 0 133 1 1663 189 0 13 chrX 67191011 67191312 -109782828 - AluJb SINE Alu -15 297 1 293 303 23 45 chrX 67191567 67191699 -109782441 - MIR SINE MIR -126 136 8 2487 36 0 13 chrX 67191703 67192009 -109782131 - AluY SINE Alu -9 302 1 262 369 50 20 chrX 67192433 67192631 -109781509 - L2 LINE L2 -528 2786 2583 32 57 0 0 chrX 67193097 67193150 -109780990 + AT_rich Low_complexity Low_complexity 1 53 0 268 135 0 0 chrX 67193153 67193190 -109780950 + U2 snRNA snRNA 1 37 -151 903 170 54 0 chrX 67193949 67194122 -109780018 - FRAM SINE Alu 0 173 1 368 70 18 0 chrX 67194129 67194186 -109779954 - L1PB2 LINE L1 -4 6147 6090 1200 41 0 0 chrX 67194236 67194382 -109779758 - L1PA5 LINE L1 -7 6147 6002 * 5197 154 39 4 chrX 67194379 67194681 -109779459 - L1PB2 LINE L1 -56 6095 5805 216 67 0 0 chrX 67194681 67194711 -109779429 + (TG)n Simple_repeat Simple_repeat 2 31 0 5197 154 39 4 chrX 67194711 67195566 -109778574 - L1PB2 LINE L1 -346 5805 4891 657 155 0 0 chrX 67195568 67195671 -109778469 - FLAM_C SINE Alu -30 113 11 1324 209 76 52 chrX 67195984 67196388 -109777752 - MER63C DNA MER1_type -1 929 516 791 266 121 0 chrX 67196388 67196587 -109777553 + MER58A DNA MER1_type 2 224 0 2111 218 14 12 chrX 67196598 67197103 -109777037 - MER63C DNA MER1_type -416 514 9 253 339 116 36 chrX 67197209 67197321 -109776819 + L2 LINE L2 3150 3270 -2 202 289 0 56 chrX 67197385 67197475 -109776665 - MIR SINE MIR -74 188 104 261 0 0 0 chrX 67197476 67197505 -109776635 + (TG)n Simple_repeat Simple_repeat 2 30 0 729 195 81 85 chrX 67197523 67197759 -109776381 - MER8 DNA MER2_type -1 238 4 231 265 273 15 chrX 67197772 67197904 -109776236 + MER5A DNA MER1_type 4 169 -20 23 0 0 0 chrX 67198487 67198510 -109775630 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chrX 67200145 67200167 -109773973 + (TA)n Simple_repeat Simple_repeat 2 23 0 14075 182 27 10 chrX 67200843 67205902 -109768238 + L1M1 LINE L1 124 5366 -2199 3535 176 29 15 chrX 67206364 67207050 -109767090 - L1PBb LINE L1 -5148 1056 361 2060 102 29 0 chrX 67207047 67207361 -109766779 + L1PB2 LINE L1 5469 5791 -360 * 309 169 0 0 chrX 67207361 67207420 -109766720 + (TA)n Simple_repeat Simple_repeat 1 59 0 2079 141 36 0 chrX 67207420 67207432 -109766708 + L1PB2 LINE L1 5776 5786 -365 342 0 0 0 chrX 67207432 67207470 -109766670 + (CA)n Simple_repeat Simple_repeat 2 39 0 2079 141 36 0 chrX 67207470 67207819 -109766321 + L1PB2 LINE L1 5786 6150 -1 189 375 38 0 chrX 67208291 67208371 -109765769 + L3 LINE CR1 1053 1135 -442 586 272 90 87 chrX 67208432 67208800 -109765340 + L3 LINE CR1 1134 1502 -75 3557 54 0 0 chrX 67209189 67209631 -109764509 + L1PA5 LINE L1 5708 6149 -5 7200 50 0 0 chrX 67210201 67211540 -109762600 - L1PA4 LINE L1 -4 6151 4813 570 183 30 8 chrX 67211922 67212053 -109762087 - L1MA7 LINE L1 -3 6288 6155 1727 175 28 6 chrX 67212475 67212658 -109761482 + L1P4 LINE L1 4918 5095 -1070 207 0 0 0 chrX 67212658 67212681 -109761459 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 216 0 0 0 chrX 67212680 67212704 -109761436 + (GA)n Simple_repeat Simple_repeat 2 25 0 1727 175 28 6 chrX 67212681 67212707 -109761433 + L1P4 LINE L1 5095 5119 -1046 1959 91 4 18 chrX 67212707 67212982 -109761158 - AluSc SINE Alu -38 271 1 1727 175 28 6 chrX 67212982 67213345 -109760795 + L1P4 LINE L1 5119 5484 -681 14981 208 22 21 chrX 67213353 67217538 -109756602 + L1P4 LINE L1 10 4275 -2186 * 25131 108 11 25 chrX 67217537 67220218 -109753922 + L1P3 LINE L1 730 3336 -3125 8801 50 3 0 chrX 67220218 67221286 -109752854 - MER11C LTR ERVK 0 1071 1 25131 108 11 25 chrX 67221286 67222896 -109751244 + L1P3 LINE L1 3336 4967 -1494 4073 138 25 7 chrX 67222891 67223601 -109750539 - L1MA3 LINE L1 -107 6198 5476 * 35 0 0 0 chrX 67223603 67223638 -109750502 + AT_rich Low_complexity Low_complexity 1 35 0 6881 165 10 9 chrX 67223638 67225993 -109748147 - L1MA1 LINE L1 -5 6297 3936 * 12447 208 22 16 chrX 67225987 67228767 -109745373 - L1P LINE L1 -939 5207 2407 2195 171 41 7 chrX 67228767 67229181 -109744959 - MSTA LTR MaLR 0 428 1 12447 208 22 16 chrX 67229181 67229306 -109744834 - L1P LINE L1 -3739 2407 2284 8860 193 16 13 chrX 67229306 67230871 -109743269 - MSTA-int LTR MaLR 0 1651 79 2082 155 131 8 chrX 67230871 67231252 -109742888 - MSTA LTR MaLR 0 428 1 8860 193 16 13 chrX 67231252 67231332 -109742808 - MSTA-int LTR MaLR -1572 79 1 2221 162 46 12 chrX 67231332 67231746 -109742394 - MSTA LTR MaLR 0 428 1 1072 230 14 14 chrX 67231746 67232030 -109742110 - L1MEc LINE L1 -3738 2447 2157 268 306 139 19 chrX 67232096 67232204 -109741936 - MIR SINE MIR -10 252 132 322 125 0 0 chrX 67232219 67232267 -109741873 + L1 LINE L1 4074 4121 -2025 * 4083 178 7 12 chrX 67232259 67232360 -109741780 + L1P4 LINE L1 4734 4834 -1646 6329 114 37 25 chrX 67232360 67233355 -109740785 + LTR13 LTR ERVK 1 1007 0 4083 178 7 12 chrX 67233355 67234539 -109739601 + L1P4 LINE L1 4834 6016 -464 216 339 62 0 chrX 67234858 67234923 -109739217 + MER91C DNA MER1_type 33 101 -39 910 273 22 4 chrX 67234935 67235166 -109738974 - MIR SINE MIR -27 235 1 470 152 11 0 chrX 67235774 67235866 -109738274 + CT-rich Low_complexity Low_complexity 2 94 0 873 242 79 0 chrX 67235867 67236038 -109738102 - AluJo SINE Alu -2 310 115 264 59 0 0 chrX 67236038 67236072 -109738068 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 873 242 79 0 chrX 67236072 67236127 -109738013 - AluJo SINE Alu -197 115 66 12858 217 38 32 chrX 67236135 67237782 -109736358 + L1PA13 LINE L1 1 1636 -5161 5706 23 0 0 chrX 67237782 67238435 -109735705 + L1PA3 LINE L1 5500 6152 -3 12858 217 38 32 chrX 67238435 67240262 -109733878 + L1PA13 LINE L1 1636 3450 -3347 1456 100 14 0 chrX 67240262 67240472 -109733668 + L1PA6 LINE L1 5939 6151 -3 12858 217 38 32 chrX 67240472 67242218 -109731922 + L1PA13 LINE L1 3450 5266 -1531 9271 163 11 30 chrX 67242209 67243767 -109730373 + L1MA1 LINE L1 3369 4839 -1463 * 6991 60 7 0 chrX 67243767 67245141 -109728999 + L1PA6 LINE L1 4771 6150 -4 9271 163 11 30 chrX 67245141 67246578 -109727562 + L1MA1 LINE L1 4839 6302 0 242 240 0 0 chrX 67246578 67246628 -109727512 + MER63C DNA MER1_type 876 925 -5 582 256 24 43 chrX 67246629 67246793 -109727347 - MIR SINE MIR -94 168 8 223 333 142 25 chrX 67247109 67247313 -109726827 - MIR SINE MIR -13 249 22 2484 189 8 2 chrX 67247313 67247783 -109726357 + L1P LINE L1 3459 3931 -2215 7465 34 1 0 chrX 67247805 67248706 -109725434 + L1PA4 LINE L1 5254 6155 0 9113 171 9 8 chrX 67248708 67251590 -109722550 + L1MA3 LINE L1 3421 6305 0 3113 279 50 18 chrX 67251602 67252970 -109721170 - L1M4 LINE L1 -807 5339 3928 407 207 69 112 chrX 67253052 67253356 -109720784 - L1M4 LINE L1 -2206 3940 3650 * 1757 23 0 4 chrX 67253322 67253550 -109720590 + L1PA3 LINE L1 5626 5847 -308 1235 204 11 11 chrX 67253578 67253847 -109720293 - L1M3 LINE L1 -550 5621 5353 2073 149 115 9 chrX 67253910 67254372 -109719768 - L1MA5A LINE L1 -4 6293 5783 5359 156 13 7 chrX 67254406 67255355 -109718785 + L1PA15 LINE L1 5209 6160 -5 1307 245 66 17 chrX 67255375 67255902 -109718238 - L1M3 LINE L1 -3279 2867 2315 1190 170 69 45 chrX 67255918 67256077 -109718063 - L1MA4 LINE L1 -6 6294 6123 1979 147 3 7 chrX 67256077 67256384 -109717756 + AluSx SINE Alu 1 306 -6 1190 170 69 45 chrX 67256384 67256513 -109717627 - L1MA4 LINE L1 -177 6123 5999 1802 241 21 0 chrX 67256538 67257015 -109717125 - L1 LINE L1 -769 5377 4891 * 3620 230 32 11 chrX 67257014 67257240 -109716900 + L1MB5 LINE L1 4843 5063 -1111 6019 113 14 1 chrX 67257240 67257338 -109716802 + L1PA11 LINE L1 4569 4664 -1510 2289 90 0 13 chrX 67257338 67257638 -109716502 + AluY SINE Alu 1 296 -15 6019 113 14 1 chrX 67257638 67259153 -109714987 + L1PA11 LINE L1 4664 6174 0 3620 230 32 11 chrX 67259153 67260234 -109713906 + L1MB5 LINE L1 5063 6174 0 328 228 152 0 chrX 67260446 67260538 -109713602 + L1ME LINE L1 5556 5661 -460 189 74 0 0 chrX 67260678 67260705 -109713435 + (TG)n Simple_repeat Simple_repeat 2 28 0 4288 147 17 1 chrX 67260722 67261425 -109712715 - L1PA16 LINE L1 0 6166 5453 2055 112 42 0 chrX 67261484 67261771 -109712369 + AluSx SINE Alu 1 299 -13 949 161 89 6 chrX 67261805 67261985 -109712155 - MER2 DNA MER2_type -139 206 12 23 0 0 0 chrX 67262278 67262301 -109711839 + AT_rich Low_complexity Low_complexity 1 23 0 305 347 14 14 chrX 67263541 67263688 -109710452 + MER5A DNA MER1_type 40 186 -3 285 236 142 55 chrX 67263808 67263935 -109710205 - MIR3 SINE MIR -51 157 20 26 50 0 0 chrX 67264044 67264084 -109710056 + AT_rich Low_complexity Low_complexity 1 40 0 247 282 73 27 chrX 67265455 67265565 -109708575 - L3 LINE CR1 -49 1528 1414 1800 182 18 9 chrX 67265582 67265923 -109708217 + MER2 DNA MER2_type 1 344 0 904 221 0 0 chrX 67266372 67266530 -109707610 - FRAM SINE Alu -13 163 6 292 241 25 25 chrX 67267045 67267124 -109707016 - MIR SINE MIR 0 262 184 188 299 224 14 chrX 67267294 67267441 -109706699 - L2 LINE L2 -781 2533 2356 381 331 73 7 chrX 67267631 67267782 -109706358 - MIR3 SINE MIR -2 206 46 228 314 50 64 chrX 67268423 67268563 -109705577 + MIR SINE MIR 56 193 -69 577 278 37 12 chrX 67268659 67268821 -109705319 + MIR SINE MIR 20 185 -77 344 259 24 0 chrX 67268845 67268930 -109705210 + L1MC4 LINE L1 6619 6705 -1337 316 308 22 0 chrX 67268870 67268961 -109705179 - L1MC4 LINE L1 -1337 6705 6613 * 331 206 48 0 chrX 67268963 67269128 -109705012 + (TA)n Simple_repeat Simple_repeat 2 174 0 238 47 47 0 chrX 67269255 67269298 -109704842 - L1MC4 LINE L1 -1339 6703 6659 336 148 0 16 chrX 67269299 67269360 -109704780 - L1MC4 LINE L1 -1339 6703 6644 1267 247 67 61 chrX 67269750 67270204 -109703936 + MER90 LTR ERV1 109 565 -49 2287 208 61 35 chrX 67270204 67270748 -109703392 + MER74A LTR ERVL 1 558 0 181 85 68 17 chrX 67270755 67270814 -109703326 + (TA)n Simple_repeat Simple_repeat 1 62 0 27 0 0 0 chrX 67270820 67270847 -109703293 + AT_rich Low_complexity Low_complexity 1 27 0 1775 160 65 9 chrX 67271255 67271580 -109702560 - MER2 DNA MER2_type 0 344 2 21 0 0 0 chrX 67271649 67271670 -109702470 + AT_rich Low_complexity Low_complexity 1 21 0 381 326 133 18 chrX 67272268 67272685 -109701455 - L3 LINE CR1 -286 1291 775 1032 227 14 5 chrX 67272717 67272937 -109701203 - MER58A DNA MER1_type -1 223 2 180 103 26 77 chrX 67272978 67273017 -109701123 + L3 LINE CR1 1231 1267 -310 266 179 137 84 chrX 67273108 67273203 -109700937 - MER94 DNA DNA -30 104 5 4053 122 85 41 chrX 67273567 67274319 -109699821 - LTR1 LTR ERV1 0 785 1 271 287 47 21 chrX 67274569 67274709 -109699431 + MIR SINE MIR 42 183 -73 360 0 0 0 chrX 67275041 67275081 -109699059 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 2230 85 0 0 chrX 67275110 67275382 -109698758 + AluSc SINE Alu 1 272 -37 396 0 0 0 chrX 67275386 67275430 -109698710 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 498 305 98 0 chrX 67276633 67276807 -109697333 + MIR SINE MIR 11 201 -61 4211 106 7 0 chrX 67276808 67277414 -109696726 + L1PA13 LINE L1 5550 6159 -4 549 178 0 20 chrX 67277499 67277600 -109696540 + MLT1C LTR MaLR 1 99 -368 15983 203 29 29 chrX 67277630 67279210 -109694930 - L1PA15 LINE L1 -4 7599 6020 3238 137 96 108 chrX 67279210 67280005 -109694135 + LTR1 LTR ERV1 1 785 0 15983 203 29 29 chrX 67280005 67281483 -109692657 - L1PA15 LINE L1 -1583 6020 4543 186 43 0 0 chrX 67281483 67281506 -109692634 + (TTA)n Simple_repeat Simple_repeat 2 24 0 15983 203 29 29 chrX 67281506 67284792 -109689348 - L1PA15 LINE L1 -3060 4543 1552 745 192 77 108 chrX 67284806 67285103 -109689037 + MLT1C LTR MaLR 103 467 0 1936 120 7 20 chrX 67286163 67286455 -109687685 + AluSp SINE Alu 1 288 -25 1178 211 117 117 chrX 67286578 67287127 -109687013 - MER21B LTR ERV1 -130 733 185 1407 266 159 49 chrX 67287132 67287866 -109686274 - L2 LINE L2 -1294 2020 1206 1731 178 43 68 chrX 67288654 67289097 -109685043 - MSTB1 LTR MaLR 0 432 1 236 262 33 0 chrX 67289400 67289461 -109684679 - MIR SINE MIR -104 104 42 1523 26 21 0 chrX 67289507 67289697 -109684443 - L1PA4 LINE L1 -2 6153 5960 202 302 0 48 chrX 67289732 67289795 -109684345 - L2 LINE L2 -14 3258 3199 314 294 64 0 chrX 67289853 67289962 -109684178 - HAL1b LINE L1 -8 1340 1225 469 311 62 26 chrX 67290206 67290547 -109683593 - L1MEc LINE L1 -3875 2435 2083 500 296 130 4 chrX 67290856 67291086 -109683054 - HAL1 LINE L1 -887 1620 1362 387 300 27 39 chrX 67291098 67291355 -109682785 - L1MEc LINE L1 -4883 1236 983 429 342 71 43 chrX 67291917 67291997 -109682143 - L1MEc LINE L1 -5379 740 664 761 214 44 16 chrX 67291997 67292077 -109682063 - MER5A DNA MER1_type -1 188 112 180 0 0 0 chrX 67292077 67292097 -109682043 + (TTAGGG)n Simple_repeat Simple_repeat 5 24 0 761 214 44 16 chrX 67292097 67292198 -109681942 - MER5A DNA MER1_type -77 112 2 429 342 71 43 chrX 67292198 67292398 -109681742 - L1MEc LINE L1 -5455 664 452 2192 125 0 0 chrX 67292514 67292826 -109681314 - AluSx SINE Alu 0 312 1 462 308 116 32 chrX 67292837 67293087 -109681053 - L1MEc LINE L1 -5735 384 114 30 0 0 0 chrX 67293217 67293247 -109680893 + AT_rich Low_complexity Low_complexity 1 30 0 352 221 0 0 chrX 67293278 67293346 -109680794 - L1MEc LINE L1 -6046 73 6 1448 143 19 0 chrX 67293365 67293624 -109680516 - L1MA8 LINE L1 -8 6283 6020 366 322 0 17 chrX 67293859 67293977 -109680163 + MER117 DNA MER1_type 7 122 -75 713 278 15 0 chrX 67293997 67294199 -109679941 - MIR SINE MIR -3 259 56 3227 122 8 4 chrX 67294199 67294689 -109679451 + L1PA16 LINE L1 5666 6157 -9 24 32 0 0 chrX 67294689 67294720 -109679420 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chrX 67294837 67294863 -109679277 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chrX 67295302 67295323 -109678817 + AT_rich Low_complexity Low_complexity 1 21 0 1186 35 0 0 chrX 67295819 67295963 -109678177 - L1PA5 LINE L1 -3 6151 6008 613 309 110 4 chrX 67295963 67296199 -109677941 - MIR SINE MIR 0 262 2 2834 238 20 32 chrX 67296452 67297446 -109676694 + L1MB4 LINE L1 2035 3007 -3375 2139 204 22 93 chrX 67297446 67298040 -109676100 + MLT2B3 LTR ERVL 3 554 0 2834 238 20 32 chrX 67298040 67298577 -109675563 + L1MB4 LINE L1 3007 3549 -2833 2814 181 4 2 chrX 67298585 67299060 -109675080 + L1PA8 LINE L1 3 478 -5397 207 0 0 0 chrX 67299060 67299083 -109675057 + (T)n Simple_repeat Simple_repeat 1 23 0 7861 16 4 0 chrX 67299187 67300176 -109673964 - L1PA2 LINE L1 -2 6153 5164 2278 29 0 0 chrX 67300176 67300449 -109673691 + L1PA2 LINE L1 4875 5147 -999 * 25281 148 19 13 chrX 67300448 67306364 -109667776 + L1PA8 LINE L1 467 6486 -1 282 343 10 0 chrX 67306559 67306661 -109667479 + L2 LINE L2 3210 3312 -1 192 77 0 0 chrX 67306663 67306689 -109667451 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 404 212 147 41 chrX 67306737 67306907 -109667233 + MER113 DNA MER1_type? 305 492 -29 438 20 0 0 chrX 67307134 67307185 -109666955 + (CA)n Simple_repeat Simple_repeat 2 52 0 1545 260 15 7 chrX 67307325 67307782 -109666358 + L1MB4 LINE L1 3558 4018 -2364 2536 47 0 0 chrX 67308363 67308663 -109665477 + AluY SINE Alu 1 300 -11 4610 218 51 25 chrX 67309146 67310153 -109663987 + L1MB4 LINE L1 4015 4994 -1422 2148 152 7 26 chrX 67310153 67310574 -109663566 - L1MA4 LINE L1 0 6300 5888 4610 218 51 25 chrX 67310574 67310941 -109663199 + L1MB4 LINE L1 4994 5350 -1066 2330 97 3 3 chrX 67310941 67311252 -109662888 + AluY SINE Alu 1 311 0 4610 218 51 25 chrX 67311252 67312213 -109661927 + L1MB4 LINE L1 5350 6412 -4 1379 167 35 0 chrX 67312276 67312534 -109661606 - L1PA16 LINE L1 -2 6164 5898 289 357 184 8 chrX 67313329 67313573 -109660567 + L2 LINE L2 2561 2847 -467 1385 196 43 84 chrX 67313573 67313977 -109660163 + MLT1A2 LTR MaLR 1 467 0 4895 161 55 28 chrX 67314130 67314932 -109659208 - L1PA16 LINE L1 -9 6157 5302 2353 97 7 0 chrX 67314932 67315241 -109658899 + AluSp SINE Alu 2 312 -1 4895 161 55 28 chrX 67315241 67315579 -109658561 - L1PA16 LINE L1 -864 5302 4975 28 71 0 0 chrX 67315588 67315644 -109658496 + AT_rich Low_complexity Low_complexity 1 56 0 273 189 16 66 chrX 67315645 67315767 -109658373 + (TATAG)n Simple_repeat Simple_repeat 3 118 0 2407 215 10 15 chrX 67315784 67316375 -109657765 - L1 LINE L1 -1163 4983 4396 1147 210 248 6 chrX 67316424 67316576 -109657564 - MSTD LTR MaLR -6 390 276 243 0 0 0 chrX 67316576 67316603 -109657537 + (TG)n Simple_repeat Simple_repeat 1 27 0 1147 210 248 6 chrX 67316603 67316764 -109657376 - MSTD LTR MaLR -120 276 1 24 0 0 0 chrX 67316823 67316847 -109657293 + AT_rich Low_complexity Low_complexity 1 24 0 736 257 0 37 chrX 67317233 67317420 -109656720 + MER45B DNA AcHobo 12 191 -849 * 2047 226 40 23 chrX 67317415 67317885 -109656255 + MER45B DNA AcHobo 79 556 -484 532 141 41 0 chrX 67317885 67318006 -109656134 + (TA)n Simple_repeat Simple_repeat 1 126 0 323 230 69 0 chrX 67318006 67318093 -109656047 + L1MC4 LINE L1 6612 6704 -1338 360 163 35 0 chrX 67318093 67318179 -109655961 + (TA)n Simple_repeat Simple_repeat 1 89 0 235 270 0 22 chrX 67318183 67318272 -109655868 + L1MC4 LINE L1 6617 6703 -1339 229 190 17 0 chrX 67318265 67318323 -109655817 - L1MCa LINE L1 -4362 2064 2006 * 320 89 74 22 chrX 67318326 67318461 -109655679 + (TA)n Simple_repeat Simple_repeat 2 143 0 2250 176 4 55 chrX 67318465 67318958 -109655182 + MER45B DNA AcHobo 568 1035 -5 243 371 10 21 chrX 67319219 67319316 -109654824 + MIR SINE MIR 16 111 -151 322 125 0 0 chrX 67319516 67319564 -109654576 + L1 LINE L1 4074 4121 -2025 * 4048 178 8 12 chrX 67319556 67319657 -109654483 + L1P4 LINE L1 4419 4519 -1646 6329 114 37 25 chrX 67319657 67320652 -109653488 + LTR13 LTR ERVK 1 1007 0 4048 178 8 12 chrX 67320652 67321835 -109652305 + L1P4 LINE L1 4519 5701 -464 216 339 62 0 chrX 67322154 67322219 -109651921 + MER91C DNA MER1_type 33 101 -39 910 273 22 4 chrX 67322231 67322462 -109651678 - MIR SINE MIR -27 235 1 470 152 11 0 chrX 67323070 67323162 -109650978 + CT-rich Low_complexity Low_complexity 2 94 0 873 242 79 0 chrX 67323163 67323334 -109650806 - AluJo SINE Alu -2 310 115 264 59 0 0 chrX 67323334 67323368 -109650772 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 873 242 79 0 chrX 67323368 67323423 -109650717 - AluJo SINE Alu -197 115 66 12858 217 38 32 chrX 67323431 67325078 -109649062 + L1PA13 LINE L1 1 1636 -5161 5706 23 0 0 chrX 67325078 67325731 -109648409 + L1PA3 LINE L1 5500 6152 -3 12858 217 38 32 chrX 67325731 67327558 -109646582 + L1PA13 LINE L1 1636 3450 -3347 1456 100 14 0 chrX 67327558 67327768 -109646372 + L1PA6 LINE L1 5939 6151 -3 12858 217 38 32 chrX 67327768 67329514 -109644626 + L1PA13 LINE L1 3450 5266 -1531 9264 163 11 30 chrX 67329505 67331063 -109643077 + L1MA1 LINE L1 3369 4837 -1465 * 6991 60 7 0 chrX 67331063 67332437 -109641703 + L1PA6 LINE L1 4771 6150 -4 9264 163 11 30 chrX 67332437 67333875 -109640265 + L1MA1 LINE L1 4837 6302 0 242 240 0 0 chrX 67333875 67333925 -109640215 + MER63 DNA MER1_type 1007 1056 -6 582 256 24 43 chrX 67333926 67334090 -109640050 - MIR SINE MIR -94 168 8 223 333 142 25 chrX 67334406 67334610 -109639530 - MIR SINE MIR -13 249 22 2484 189 8 2 chrX 67334610 67335080 -109639060 + L1P LINE L1 3459 3931 -2215 7465 34 1 0 chrX 67335102 67336003 -109638137 + L1PA4 LINE L1 5254 6155 0 9113 171 9 8 chrX 67336005 67338887 -109635253 + L1MA3 LINE L1 3421 6305 0 3113 279 50 18 chrX 67338899 67340267 -109633873 - L1M4 LINE L1 -807 5339 3928 407 207 69 112 chrX 67340349 67340653 -109633487 - L1M4 LINE L1 -2206 3940 3650 * 1757 23 0 4 chrX 67340619 67340847 -109633293 + L1PA3 LINE L1 5626 5847 -308 930 203 12 22 chrX 67340822 67341070 -109633070 - L1M2 LINE L1 -550 5621 5428 * 16334 49 8 1 chrX 67341170 67343695 -109630445 + L1PA3 LINE L1 3296 5839 -316 11147 78 8 45 chrX 67343795 67343899 -109630241 + L1P LINE L1 3002 3108 -3038 8828 49 3 0 chrX 67343899 67344967 -109629173 - MER11C LTR ERVK 0 1071 1 11147 78 8 45 chrX 67344967 67346577 -109627563 + L1P LINE L1 3108 4652 -1494 4058 139 25 7 chrX 67346572 67347282 -109626858 - L1MA3 LINE L1 -107 6198 5476 * 35 0 0 0 chrX 67347284 67347319 -109626821 + AT_rich Low_complexity Low_complexity 1 35 0 6881 165 10 9 chrX 67347319 67349674 -109624466 - L1MA1 LINE L1 -5 6297 3936 * 12495 207 22 16 chrX 67349668 67352446 -109621694 - L1P LINE L1 -939 5207 2407 2195 171 41 7 chrX 67352446 67352860 -109621280 - MSTA LTR MaLR 0 428 1 12495 207 22 16 chrX 67352860 67352985 -109621155 - L1P LINE L1 -3739 2407 2284 8800 194 16 13 chrX 67352985 67354550 -109619590 - MSTA-int LTR MaLR 0 1651 79 2082 155 131 8 chrX 67354550 67354931 -109619209 - MSTA LTR MaLR 0 428 1 8800 194 16 13 chrX 67354931 67355011 -109619129 - MSTA-int LTR MaLR -1572 79 1 2221 162 46 12 chrX 67355011 67355425 -109618715 - MSTA LTR MaLR 0 428 1 9229 218 46 15 chrX 67355425 67358406 -109615734 - L1PA13 LINE L1 -3738 3059 1 5723 182 19 12 chrX 67361405 67361644 -109612496 - L1MA3 LINE L1 0 6305 6069 225 65 0 0 chrX 67361644 67361675 -109612465 + (CTAA)n Simple_repeat Simple_repeat 1 31 0 5723 182 19 12 chrX 67361675 67362255 -109611885 - L1MA3 LINE L1 -236 6069 5494 2197 105 7 0 chrX 67362255 67362561 -109611579 + AluSp SINE Alu 1 308 -5 5723 182 19 12 chrX 67362561 67363600 -109610540 - L1MA3 LINE L1 -811 5494 4435 489 183 0 0 chrX 67363660 67363742 -109610398 + MER58 DNA MER1_type 167 248 -93 39793 67 14 1 chrX 67363756 67369822 -109604318 - L1PA5 LINE L1 -2 6152 5 21 0 0 0 chrX 67369822 67369843 -109604297 + AT_rich Low_complexity Low_complexity 1 21 0 3771 190 22 126 chrX 67369905 67371264 -109602876 - L1MA3 LINE L1 -1724 4422 3205 422 294 185 14 chrX 67371437 67371648 -109602492 - MLT1J2 LTR MaLR -6 444 198 440 206 0 20 chrX 67371667 67371769 -109602371 - L1MC/D LINE L1 -559 5683 5584 577 272 31 6 chrX 67371774 67371936 -109602204 - MLT1J2 LTR MaLR -270 180 15 2478 178 9 30 chrX 67372286 67372752 -109601388 - MSTB2 LTR MaLR -1 456 1 511 343 25 12 chrX 67373197 67373439 -109600701 - MIR SINE MIR -12 250 6 2803 212 26 47 chrX 67373518 67373693 -109600447 - L1M3 LINE L1 -469 5702 5525 253 0 54 0 chrX 67373693 67373730 -109600410 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2803 212 26 47 chrX 67373730 67374126 -109600014 - L1M3 LINE L1 -646 5525 5122 1687 158 25 0 chrX 67374126 67374443 -109599697 - L1MA3 LINE L1 0 6305 5981 2803 212 26 47 chrX 67374443 67375055 -109599085 - L1M3 LINE L1 -1049 5122 4549 11606 235 33 31 chrX 67375059 67379489 -109594651 - L1PB4 LINE L1 -2 6857 2439 225 0 0 0 chrX 67379489 67379514 -109594626 + (TA)n Simple_repeat Simple_repeat 2 26 0 707 120 0 0 chrX 67379514 67379614 -109594526 - AluSp/q SINE Alu -20 293 194 11606 235 33 31 chrX 67379614 67380096 -109594044 - L1PB4 LINE L1 -4420 2439 1960 2852 7 0 0 chrX 67380096 67380404 -109593736 - AluYa5 SINE Alu -3 308 1 11606 235 33 31 chrX 67380404 67380861 -109593279 - L1PB4 LINE L1 -4899 1960 1336 1032 247 32 2 chrX 67380847 67381212 -109592928 - L1PB4 LINE L1 -5286 1563 3 * 1701 239 38 6 chrX 67381215 67381721 -109592419 - L1 LINE L1 -1585 4561 4040 1980 214 26 9 chrX 67381739 67382196 -109591944 + L1 LINE L1 3691 4155 -1991 352 235 0 12 chrX 67382188 67382269 -109591871 - L1ME LINE L1 -529 5637 5558 * 408 134 0 0 chrX 67382719 67382786 -109591354 + L1MA2 LINE L1 6236 6302 -2 22 0 0 0 chrX 67382852 67382874 -109591266 + AT_rich Low_complexity Low_complexity 1 22 0 3827 135 14 0 chrX 67382874 67383468 -109590672 - LTR43 LTR ERV1 0 602 1 19904 181 46 22 chrX 67383468 67387551 -109586589 - LTR43-int LTR ERV1 0 4798 615 6028 152 19 2 chrX 67387557 67389103 -109585037 - L1PB1 LINE L1 -7 6860 5289 2282 155 37 7 chrX 67389081 67389906 -109584234 - L1PB1 LINE L1 -3478 3384 2478 * 929 108 40 20 chrX 67389901 67390049 -109584091 + L1PBa LINE L1 2378 2528 -4335 * 2599 116 5 5 chrX 67390032 67390420 -109583720 - L1PB1 LINE L1 -5084 1779 1392 1031 205 5 9 chrX 67390397 67390612 -109583528 - L1PB1 LINE L1 -6647 216 3 * 321 154 0 0 chrX 67390623 67390675 -109583465 - L1 LINE L1 -1324 4822 4771 * 16802 120 28 4 chrX 67390670 67393245 -109580895 - L1PBa LINE L1 -4227 2636 1 2000 189 28 33 chrX 67393250 67393836 -109580304 - LTR43-int LTR ERV1 -4174 624 1 12308 67 0 1 chrX 67393849 67396231 -109577909 - L1PA6 LINE L1 -11 6143 3771 3369 155 19 2 chrX 67396244 67396836 -109577304 - LTR43 LTR ERV1 0 602 1 1521 193 19 37 chrX 67396957 67397279 -109576861 - MLT1B LTR MaLR -2 388 73 13021 196 19 20 chrX 67397283 67399466 -109574674 + L1PB1 LINE L1 2191 4374 -1777 195 100 0 0 chrX 67399466 67399496 -109574644 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 13021 196 19 20 chrX 67399496 67399993 -109574147 + L1PB1 LINE L1 4374 4870 -1281 1412 82 0 0 chrX 67399993 67400187 -109573953 - L1PA6 LINE L1 -3 6151 5958 13021 196 19 20 chrX 67400187 67401466 -109572674 + L1PB1 LINE L1 4870 6147 -4 237 151 0 0 chrX 67401485 67401538 -109572602 + (CCAA)n Simple_repeat Simple_repeat 3 55 0 194 209 23 0 chrX 67401585 67401628 -109572512 - MER5B DNA MER1_type -134 44 1 266 340 28 19 chrX 67401664 67401770 -109572370 - MER5A DNA MER1_type -29 160 54 458 187 22 0 chrX 67401834 67401925 -109572215 - MLT1B LTR MaLR -295 95 3 354 250 23 0 chrX 67402130 67402218 -109571922 + MIR SINE MIR 149 238 -24 23 33 0 0 chrX 67402962 67402992 -109571148 + AT_rich Low_complexity Low_complexity 1 30 0 1312 162 26 15 chrX 67403148 67403413 -109570727 + L1MB2 LINE L1 5896 6163 -8 674 196 57 46 chrX 67403417 67403528 -109570612 - L1M3 LINE L1 -490 5681 5566 848 48 0 0 chrX 67403528 67403632 -109570508 - L1PA7 LINE L1 0 6154 6051 674 196 57 46 chrX 67403632 67403714 -109570426 - L1M3 LINE L1 -605 5566 5486 519 178 64 85 chrX 67403724 67403933 -109570207 - L1MA9 LINE L1 -27 6272 6067 1914 197 24 65 chrX 67403970 67404478 -109569662 - L1MA9 LINE L1 -199 6113 5627 2850 192 61 10 chrX 67404480 67405153 -109568987 + L1M2 LINE L1 3856 4562 -1584 903 245 61 125 chrX 67405156 67405613 -109568527 + MLT1A1 LTR MaLR 1 365 0 3138 215 9 14 chrX 67405613 67406690 -109567450 + L1M2 LINE L1 4561 5633 -679 23 33 0 0 chrX 67406693 67406723 -109567417 + AT_rich Low_complexity Low_complexity 1 30 0 2657 264 48 8 chrX 67406723 67407606 -109566534 - L1MA9 LINE L1 -743 5403 4506 359 257 124 29 chrX 67407611 67407716 -109566424 + MSTB LTR MaLR 30 144 -282 7009 141 6 16 chrX 67407726 67408926 -109565214 - L1P LINE L1 -2564 3582 2395 4988 144 7 1 chrX 67408927 67409778 -109564362 + L1P LINE L1 4195 5050 -1096 * 5692 76 2 12 chrX 67409763 67410882 -109563258 - L1PA7 LINE L1 -145 6009 4903 1086 244 4 0 chrX 67410904 67411150 -109562990 + AluJb SINE Alu 11 257 -55 1045 211 123 0 chrX 67411151 67411285 -109562855 - AluJb SINE Alu -44 268 152 201 94 0 0 chrX 67411285 67411317 -109562823 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1045 211 123 0 chrX 67411317 67411410 -109562730 - AluJb SINE Alu -160 152 13 492 240 48 0 chrX 67411437 67411541 -109562599 - L1PA16 LINE L1 -78 6088 5980 266 332 29 46 chrX 67411781 67412019 -109562121 - L1MC/D LINE L1 -2001 5807 5574 18359 55 1 0 chrX 67412135 67415272 -109558868 + L1PA5 LINE L1 3013 6154 0 23 0 0 0 chrX 67415732 67415755 -109558385 + AT_rich Low_complexity Low_complexity 1 23 0 8165 175 22 22 chrX 67415795 67417866 -109556274 - L1MA8 LINE L1 -6 6285 4210 2078 141 0 0 chrX 67417866 67418163 -109555977 + AluSx SINE Alu 1 297 -15 8165 175 22 22 chrX 67418163 67418725 -109555415 - L1MA8 LINE L1 -2081 4210 3649 28 0 0 0 chrX 67418725 67418753 -109555387 + AT_rich Low_complexity Low_complexity 1 28 0 607 131 104 33 chrX 67418759 67418942 -109555198 - Charlie1a DNA MER1_type -115 1340 1145 1413 247 64 8 chrX 67418949 67419338 -109554802 + LTR52 LTR ERVL 8 418 -3 1125 185 42 15 chrX 67419338 67419574 -109554566 - Charlie1a DNA MER1_type -300 1155 913 1403 187 66 0 chrX 67419595 67419712 -109554428 + AluJb SINE Alu 2 110 -202 215 29 88 0 chrX 67419712 67419746 -109554394 + A-rich Low_complexity Low_complexity 2 38 0 1403 187 66 0 chrX 67419746 67419885 -109554255 + AluJb SINE Alu 110 275 -37 2139 263 36 8 chrX 67419903 67420493 -109553647 - Charlie1a DNA MER1_type -847 608 3 708 152 242 114 chrX 67421790 67422228 -109551912 + AluJb SINE Alu 1 472 0 23 0 0 0 chrX 67422365 67422388 -109551752 + AT_rich Low_complexity Low_complexity 1 23 0 303 109 0 0 chrX 67422617 67422663 -109551477 + MER53 DNA DNA 2 47 -142 221 289 121 0 chrX 67422999 67423082 -109551058 + MIR SINE MIR 120 212 -50 322 289 85 20 chrX 67423186 67423387 -109550753 - L1MC5 LINE L1 -29 7932 7719 2279 87 7 3 chrX 67423794 67424093 -109550047 + AluSq SINE Alu 3 302 -11 237 239 0 56 chrX 67426097 67426168 -109547972 - MIR SINE MIR -122 140 74 311 296 89 74 chrX 67426549 67426684 -109547456 + MIR3 SINE MIR 23 159 -49 259 322 23 23 chrX 67426763 67426934 -109547206 - L1MC5 LINE L1 -474 7487 7317 * 292 313 82 10 chrX 67426931 67427126 -109547014 - L1MC4 LINE L1 -567 7475 7267 225 94 0 0 chrX 67429518 67429550 -109544590 + (A)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chrX 67429892 67429920 -109544220 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 67430462 67430490 -109543650 + AT_rich Low_complexity Low_complexity 1 28 0 206 349 24 12 chrX 67432347 67432430 -109541710 - MIR3 SINE MIR -19 189 106 689 317 163 42 chrX 67432661 67433140 -109541000 - L3 LINE CR1 -3 1574 1038 432 0 0 0 chrX 67433156 67433204 -109540936 + (TA)n Simple_repeat Simple_repeat 2 49 0 659 301 56 1 chrX 67433234 67433448 -109540692 - MIR SINE MIR -6 256 34 2065 100 11 0 chrX 67433552 67433831 -109540309 + AluSx SINE Alu 1 282 -30 508 338 154 16 chrX 67433905 67434287 -109539853 - L3 LINE CR1 -733 844 410 1717 193 0 3 chrX 67434402 67434698 -109539442 + AluJb SINE Alu 1 295 -17 213 39 0 0 chrX 67435422 67435448 -109538692 + (TTG)n Simple_repeat Simple_repeat 2 27 0 463 262 41 64 chrX 67435967 67436139 -109538001 + MIR SINE MIR 93 260 -2 2157 110 3 7 chrX 67436489 67436798 -109537342 - AluY SINE Alu -3 308 1 654 310 96 8 chrX 67437038 67437277 -109536863 - MIR SINE MIR -1 261 2 228 122 0 0 chrX 67438234 67438275 -109535865 + (TCTA)n Simple_repeat Simple_repeat 1 41 0 29 47 0 0 chrX 67439976 67440019 -109534121 + AT_rich Low_complexity Low_complexity 1 43 0 204 40 0 0 chrX 67442092 67442117 -109532023 + (T)n Simple_repeat Simple_repeat 1 25 0 976 213 38 5 chrX 67443495 67443706 -109530434 + MER20 DNA MER1_type 2 219 0 203 250 0 0 chrX 67444331 67444371 -109529769 + (TG)n Simple_repeat Simple_repeat 2 41 0 237 265 86 26 chrX 67444519 67444636 -109529504 + MIR SINE MIR 74 197 -65 234 0 0 0 chrX 67444646 67444672 -109529468 + (TTA)n Simple_repeat Simple_repeat 3 28 0 612 147 9 0 chrX 67445409 67445518 -109528622 - L1PA13 LINE L1 -4 6159 6050 26 30 0 0 chrX 67446116 67446149 -109527991 + AT_rich Low_complexity Low_complexity 1 33 0 276 393 0 0 chrX 67446259 67446366 -109527774 + L2 LINE L2 2586 2692 -622 492 304 38 16 chrX 67446408 67446592 -109527548 - MER5A DNA MER1_type -1 188 1 327 49 0 0 chrX 67446802 67446843 -109527297 + (TG)n Simple_repeat Simple_repeat 1 41 0 276 102 0 0 chrX 67446843 67446892 -109527248 + (GA)n Simple_repeat Simple_repeat 2 50 0 1904 123 49 3 chrX 67447247 67447532 -109526608 + AluSx SINE Alu 1 298 -14 1792 53 0 0 chrX 67447840 67448067 -109526073 - L1PA4 LINE L1 -1 6154 5928 207 0 0 0 chrX 67448819 67448842 -109525298 + (T)n Simple_repeat Simple_repeat 1 23 0 379 173 141 136 chrX 67449042 67449233 -109524907 - L2 LINE L2 -1 3312 3121 407 309 68 0 chrX 67449520 67449682 -109524458 - L2 LINE L2 -622 2692 2520 1073 242 22 54 chrX 67451362 67451676 -109522464 + L2 LINE L2 2445 2748 -566 564 212 85 18 chrX 67451677 67451842 -109522298 - Charlie4a DNA MER1_type 0 508 333 1571 172 16 22 chrX 67452104 67452423 -109521717 - Charlie4a DNA MER1_type -178 330 14 194 352 80 12 chrX 67452481 67452643 -109521497 + MIR SINE MIR 48 220 -42 671 295 93 5 chrX 67452694 67452887 -109521253 + L2 LINE L2 2742 2951 -363 647 219 0 0 chrX 67452891 67453037 -109521103 - L1M4 LINE L1 -836 5310 5165 535 312 5 49 chrX 67453307 67453512 -109520628 + MIR SINE MIR 50 245 -17 600 302 31 47 chrX 67454046 67454122 -109520018 - MIR SINE MIR -2 260 184 5567 135 16 8 chrX 67454122 67455727 -109518413 - L1PA13 LINE L1 -4 6159 4542 600 302 31 47 chrX 67455727 67455908 -109518232 - MIR SINE MIR -78 184 7 261 229 104 21 chrX 67456023 67456119 -109518021 + MIR SINE MIR 88 191 -71 28 71 0 0 chrX 67456177 67456233 -109517907 + AT_rich Low_complexity Low_complexity 1 56 0 311 198 35 23 chrX 67456362 67456448 -109517692 - L2 LINE L2 -358 2914 2828 280 265 15 0 chrX 67456468 67456536 -109517604 - L2 LINE L2 -635 2679 2611 460 330 11 11 chrX 67456991 67457179 -109516961 + MIR SINE MIR 65 252 -10 1353 207 42 68 chrX 67457237 67457619 -109516521 - THE1C LTR MaLR 0 375 4 6897 155 11 17 chrX 67457622 67458761 -109515379 - THE1C-int LTR MaLR 0 1580 448 570 141 20 0 chrX 67458750 67458849 -109515291 - THE1C-int LTR MaLR -1479 101 1 * 1598 170 45 68 chrX 67458851 67459233 -109514907 - THE1C LTR MaLR -2 373 1 2440 198 28 68 chrX 67460068 67460689 -109513451 + L1M4 LINE L1 836 1426 -5116 2673 7 0 0 chrX 67460689 67461013 -109513127 - AluYb8 SINE Alu 0 324 1 2440 198 28 68 chrX 67461013 67461129 -109513011 + L1M4 LINE L1 1426 1545 -4997 998 242 141 14 chrX 67461131 67461565 -109512575 + L1M4 LINE L1 2889 3377 -3267 777 168 48 0 chrX 67461574 67461741 -109512399 - L1MA8 LINE L1 0 6291 6117 330 213 0 0 chrX 67461743 67461818 -109512322 - L1PA15 LINE L1 -4 6161 6087 * 458 134 0 0 chrX 67461815 67461882 -109512258 + L1PA15 LINE L1 6011 6077 -88 * 855 144 29 6 chrX 67461871 67462045 -109512095 - L1 LINE L1 -1674 4472 4295 22 0 0 0 chrX 67462045 67462067 -109512073 + AT_rich Low_complexity Low_complexity 1 22 0 1679 160 10 2 chrX 67462069 67463283 -109510857 - L1MA2 LINE L1 -7 7716 6423 17368 172 18 37 chrX 67463289 67464894 -109509246 - L1MA2 LINE L1 -4262 3303 1670 318 26 0 0 chrX 67464894 67464933 -109509207 + (TC)n Simple_repeat Simple_repeat 2 40 0 17368 172 18 37 chrX 67464933 67466680 -109507460 - L1MA2 LINE L1 -5895 1670 13 2357 148 46 4 chrX 67466721 67467175 -109506965 - L1 LINE L1 -1830 4316 3844 2396 285 52 16 chrX 67467180 67468274 -109505866 + L1M4 LINE L1 2868 4000 -2146 202 331 97 32 chrX 67469674 67469798 -109504342 - L2 LINE L2 -2 3270 3139 * 621 241 26 8 chrX 67469772 67469941 -109504199 + MIR SINE MIR 22 196 -66 230 222 0 56 chrX 67469993 67470047 -109504093 + L2 LINE L2 3210 3260 -12 501 341 11 11 chrX 67470215 67470397 -109503743 - MER5A DNA MER1_type 0 189 8 22 56 0 0 chrX 67470806 67470842 -109503298 + AT_rich Low_complexity Low_complexity 1 36 0 631 229 50 50 chrX 67471223 67471424 -109502716 - MIR3 SINE MIR -5 203 3 489 244 52 0 chrX 67471966 67472081 -109502059 + MER94 DNA DNA 4 124 -10 621 171 0 0 chrX 67472162 67472267 -109501873 - L1MA7 LINE L1 -403 5888 5784 536 153 41 0 chrX 67472269 67472367 -109501773 + L1MA7 LINE L1 5693 5794 -540 1900 160 12 32 chrX 67472372 67472784 -109501356 + L1MA7 LINE L1 5888 6291 0 997 216 27 22 chrX 67472788 67473010 -109501130 + MLT1A1 LTR MaLR 143 365 0 812 325 67 20 chrX 67473054 67473263 -109500877 + L2 LINE L2 2590 2788 -525 2408 78 3 0 chrX 67473263 67473558 -109500582 - AluY SINE Alu -15 296 1 812 325 67 20 chrX 67473558 67473882 -109500258 + L2 LINE L2 2788 3178 -135 1503 181 83 28 chrX 67473882 67474207 -109499933 + MER2 DNA MER2_type 1 343 -1 812 325 67 20 chrX 67474207 67474348 -109499792 + L2 LINE L2 3178 3311 -2 7678 21 0 0 chrX 67475093 67476173 -109497967 - L1PA3 LINE L1 0 6155 5081 1534 206 18 0 chrX 67476418 67476704 -109497436 - AluJo SINE Alu -21 291 1 301 257 45 117 chrX 67477253 67477362 -109496778 + MIR SINE MIR 91 184 -78 2084 123 0 0 chrX 67477362 67477647 -109496493 + AluSg SINE Alu 1 285 -25 301 257 45 117 chrX 67477647 67477716 -109496424 + MIR SINE MIR 184 256 -6 10400 247 18 19 chrX 67477911 67481538 -109492602 - L1PA12 LINE L1 -1856 5728 2107 2144 235 108 17 chrX 67481591 67482255 -109491885 - MER50 LTR ERV1 0 734 10 1720 286 51 63 chrX 67482261 67483176 -109490964 - L1PA12 LINE L1 -6667 914 11 * 2144 212 7 52 chrX 67483170 67483696 -109490444 - L1 LINE L1 -1706 4440 3943 5944 79 12 0 chrX 67483696 67484497 -109489643 + L1PA7 LINE L1 5341 6151 -3 2144 212 7 52 chrX 67484497 67484570 -109489570 - L1 LINE L1 -2203 3943 3868 944 68 15 8 chrX 67484575 67484707 -109489433 - L1PA3 LINE L1 -3 6152 6020 1238 205 17 78 chrX 67484807 67485153 -109488987 + L1MB1 LINE L1 4559 4883 -1263 1215 268 0 0 chrX 67485163 67485439 -109488701 - MLT1A1 LTR MaLR -89 276 1 1490 200 13 1 chrX 67485444 67485759 -109488381 + L1MB1 LINE L1 5469 5793 -375 280 215 25 25 chrX 67485796 67486005 -109488135 + (TA)n Simple_repeat Simple_repeat 1 209 0 1693 205 33 16 chrX 67486015 67486381 -109487759 + L1MB1 LINE L1 5797 6168 0 1269 225 32 24 chrX 67486382 67486756 -109487384 + L1MB7 LINE L1 4549 4925 -1221 * 1409 176 9 116 chrX 67486753 67487186 -109486954 + L1MA7 LINE L1 5894 6280 -11 789 118 0 22 chrX 67487211 67487347 -109486793 - L1MA3 LINE L1 0 6305 6173 2976 240 34 21 chrX 67487397 67488631 -109485509 + L1MB7 LINE L1 4909 6163 -21 204 103 52 0 chrX 67488631 67488689 -109485451 + (TA)n Simple_repeat Simple_repeat 1 61 0 301 338 7 63 chrX 67489105 67489247 -109484893 - L2 LINE L2 -260 3053 2920 308 276 73 68 chrX 67489306 67489498 -109484642 - L1MEc LINE L1 -5199 1197 1005 5034 161 23 4 chrX 67489608 67491098 -109483042 - L1PA15 LINE L1 -17 6148 4644 2332 106 3 0 chrX 67491101 67491412 -109482728 - AluSp SINE Alu -1 312 1 486 160 0 0 chrX 67491534 67491634 -109482506 + L1PA15 LINE L1 6066 6165 0 2452 263 41 29 chrX 67491770 67493553 -109480587 + L1M4 LINE L1 15 5881 -782 3312 163 2 27 chrX 67493563 67494200 -109479940 - L1PA15 LINE L1 -4513 1633 1013 * 10200 82 2 4 chrX 67494198 67495602 -109478538 + L1PA6 LINE L1 3968 5368 -778 4734 65 3 0 chrX 67495599 67496201 -109477939 + L1PA6 LINE L1 5322 5925 -229 * 464 213 0 0 chrX 67496444 67496538 -109477602 - MER92B LTR ERV1 0 636 543 1177 215 124 43 chrX 67496557 67496929 -109477211 - MER92B LTR ERV1 -233 403 2 2191 99 7 10 chrX 67497113 67497415 -109476725 + AluSx SINE Alu 1 301 -11 244 263 26 9 chrX 67497447 67497561 -109476579 + (TA)n Simple_repeat Simple_repeat 2 117 0 214 300 146 27 chrX 67497572 67497682 -109476458 - L3 LINE CR1 -224 1353 1231 1947 149 33 51 chrX 67498507 67498956 -109475184 + L1MA8 LINE L1 5845 6285 -6 23 0 0 0 chrX 67498996 67499019 -109475121 + AT_rich Low_complexity Low_complexity 1 23 0 41978 61 5 0 chrX 67499479 67505606 -109468534 - L1PA5 LINE L1 0 6154 2 401 267 99 15 chrX 67505642 67505773 -109468367 - L2 LINE L2 0 3313 3172 13342 80 2 1 chrX 67505924 67507683 -109466457 + L1PA4 LINE L1 7 1768 -4378 * 15333 42 2 2 chrX 67507678 67510993 -109463147 + L1PA4 LINE L1 2836 6152 -3 27 29 0 0 chrX 67511481 67511515 -109462625 + AT_rich Low_complexity Low_complexity 1 34 0 285 146 78 78 chrX 67511951 67512054 -109462086 - L1MC5 LINE L1 -49 7912 7810 23 54 0 0 chrX 67512065 67512102 -109462038 + AT_rich Low_complexity Low_complexity 1 37 0 246 255 142 9 chrX 67512141 67512247 -109461893 - MIR SINE MIR -108 154 35 317 325 17 0 chrX 67513367 67513487 -109460653 - MIR SINE MIR 0 262 141 358 272 173 29 chrX 67513777 67513950 -109460190 + MIR SINE MIR 53 250 -12 24 0 0 0 chrX 67516312 67516336 -109457804 + AT_rich Low_complexity Low_complexity 1 24 0 1708 166 28 3 chrX 67517399 67517683 -109456457 + AluJo SINE Alu 1 291 -21 24 0 0 0 chrX 67517731 67517755 -109456385 + AT_rich Low_complexity Low_complexity 1 24 0 3010 115 7 0 chrX 67517788 67518224 -109455916 + L1PA13 LINE L1 5445 5883 -280 2289 259 35 10 chrX 67518231 67518953 -109455187 + L1MC4a LINE L1 7069 7808 0 3066 97 39 7 chrX 67519344 67519878 -109454262 - L1PA11 LINE L1 -1 6173 5515 517 331 52 20 chrX 67520122 67520373 -109453767 - MIR SINE MIR -1 261 3 6322 164 14 14 chrX 67521848 67523360 -109450780 - L1MA2 LINE L1 0 7723 6216 2392 97 0 3 chrX 67523360 67523669 -109450471 - AluY SINE Alu -3 308 1 6322 164 14 14 chrX 67523669 67523784 -109450356 - L1MA2 LINE L1 -1507 6216 6102 1778 148 32 21 chrX 67523783 67524155 -109449985 - L1MA2 LINE L1 -4213 3352 2977 * 440 180 20 40 chrX 67524887 67524987 -109449153 - MLT1C LTR MaLR 0 467 370 12811 209 29 83 chrX 67524990 67525908 -109448232 - L1PA11 LINE L1 -6 6819 5853 2217 125 0 3 chrX 67525908 67526219 -109447921 - AluSx SINE Alu -2 310 1 12811 209 29 83 chrX 67526219 67529464 -109444676 - L1PA11 LINE L1 -972 5853 3160 371 20 0 20 chrX 67529464 67529513 -109444627 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 12811 209 29 83 chrX 67529513 67532510 -109441630 - L1PA11 LINE L1 -3665 3160 2 912 161 6 0 chrX 67532518 67532679 -109441461 - L1MA2 LINE L1 -4569 2996 2835 2191 98 0 3 chrX 67532703 67533011 -109441129 + AluY SINE Alu 1 307 0 7412 210 60 59 chrX 67533016 67534256 -109439884 - L1MA2 LINE L1 -5714 1851 607 1771 37 0 0 chrX 67534256 67534470 -109439670 + L1PA4 LINE L1 5939 6152 -3 7412 210 60 59 chrX 67534470 67535056 -109439084 - L1MA2 LINE L1 -6958 607 23 5326 224 22 14 chrX 67535071 67536847 -109437293 - L1PB3 LINE L1 -1 6869 5080 4998 294 29 33 chrX 67536847 67541038 -109433102 - L1PB3 LINE L1 -3432 3430 3 1635 212 9 3 chrX 67541519 67541859 -109432281 - L1MA7 LINE L1 -518 5773 5432 2482 162 11 46 chrX 67541859 67542378 -109431762 + L1MA7 LINE L1 5777 6282 -9 180 0 0 0 chrX 67542386 67542406 -109431734 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 422 276 26 9 chrX 67543098 67543214 -109430926 - L2 LINE L2 -4 3309 3192 685 309 82 0 chrX 67543224 67543444 -109430696 + MIR SINE MIR 20 257 -5 267 210 74 0 chrX 67543458 67543539 -109430601 - L2 LINE L2 -137 3176 3090 265 200 0 43 chrX 67543547 67543617 -109430523 - L2 LINE L2 -364 2908 2842 2800 170 4 13 chrX 67544100 67544630 -109429510 - L1MB1 LINE L1 -136 6053 5529 269 89 125 0 chrX 67544614 67544670 -109429470 + L1MB1 LINE L1 6093 6155 -13 * 1739 73 4 0 chrX 67544683 67544917 -109429223 - L1PA5 LINE L1 0 6154 5920 513 73 0 0 chrX 67544918 67544986 -109429154 + L1PA5 LINE L1 5861 5928 -227 * 684 190 110 0 chrX 67544982 67545145 -109428995 + L1MA10 LINE L1 6141 6321 -13 422 290 16 8 chrX 67545466 67545590 -109428550 - L2 LINE L2 -3 3310 3186 261 281 9 0 chrX 67546731 67546845 -109427295 + MER5C DNA MER1_type 167 281 -43 192 175 0 25 chrX 67546942 67546982 -109427158 - L2 LINE L2 -11 3302 3264 373 281 196 26 chrX 67547074 67547227 -109426913 + MER5A DNA MER1_type 4 182 -7 1555 197 0 10 chrX 67547234 67547523 -109426617 + AluJb SINE Alu 1 286 -26 779 284 76 10 chrX 67547573 67547876 -109426264 + MER5C DNA MER1_type 1 323 -1 247 339 15 0 chrX 67548352 67548417 -109425723 - L2 LINE L2 -78 3194 3129 291 244 26 13 chrX 67548483 67548560 -109425580 + Tigger5 DNA MER2_type 1 78 -2245 386 241 0 0 chrX 67548560 67548639 -109425501 - Tigger5 DNA MER2_type -3 2320 2242 320 264 0 0 chrX 67548637 67548709 -109425431 + Tigger5 DNA MER2_type 2251 2322 -1 * 5609 158 53 32 chrX 67548721 67549867 -109424273 - Tigger3b DNA MER2_type -1 1230 61 10794 172 20 20 chrX 67549871 67553400 -109420740 - L1MA1 LINE L1 0 7721 4194 271 23 70 0 chrX 67553424 67553467 -109420673 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 13372 203 36 19 chrX 67553474 67559441 -109414699 - L1PB1 LINE L1 -8 6859 661 588 192 0 0 chrX 67559438 67559542 -109414598 - L1MA1 LINE L1 -3465 4100 3997 * 343 232 0 0 chrX 67559681 67559750 -109414390 - L1MA1 LINE L1 -5968 1597 1529 15181 242 29 19 chrX 67559881 67565074 -109409066 + L1PA15 LINE L1 1 5316 -1500 2070 133 0 34 chrX 67565074 67565397 -109408743 + AluSx SINE Alu 1 312 0 15181 242 29 19 chrX 67565397 67566896 -109407244 + L1PA15 LINE L1 5316 6799 -17 242 299 0 11 chrX 67567103 67567190 -109406950 + L1MEd LINE L1 988 1073 -5046 297 338 7 63 chrX 67567257 67567399 -109406741 + L2 LINE L2 2920 3053 -260 204 103 52 0 chrX 67567815 67567873 -109406267 + (TA)n Simple_repeat Simple_repeat 2 62 0 3033 240 34 21 chrX 67567873 67569107 -109405033 - L1MB7 LINE L1 -21 6399 5145 791 118 0 22 chrX 67569157 67569293 -109404847 + L1MA3 LINE L1 6173 6305 0 1438 176 9 116 chrX 67569318 67569751 -109404389 - L1MA7 LINE L1 -11 6280 5894 1303 225 32 24 chrX 67569748 67570122 -109404018 - L1MB7 LINE L1 -1221 5161 4785 * 1714 205 33 16 chrX 67570123 67570489 -109403651 - L1MB1 LINE L1 0 6168 5797 280 215 25 25 chrX 67570499 67570708 -109403432 + (TA)n Simple_repeat Simple_repeat 1 209 0 1509 200 13 1 chrX 67570745 67571060 -109403080 - L1MB1 LINE L1 -375 5793 5469 1221 268 0 0 chrX 67571065 67571341 -109402799 + MLT1A1 LTR MaLR 1 276 -89 7154 223 47 34 chrX 67571351 67573476 -109400664 - L1MB1 LINE L1 -1263 4883 2731 3478 238 73 111 chrX 67573474 67576411 -109397729 - L1MB7 LINE L1 -1575 4807 1963 * 367 253 0 11 chrX 67576473 67576560 -109397580 - L1MB7 LINE L1 -4659 1725 1640 1621 155 24 57 chrX 67576567 67576807 -109397333 - L1MC/D LINE L1 -586 5747 5520 1325 62 51 31 chrX 67576807 67577000 -109397140 + L1PA8 LINE L1 5973 6171 -1 1621 155 24 57 chrX 67577000 67577095 -109397045 - L1MC/D LINE L1 -813 5520 5423 327 300 21 14 chrX 67577084 67577224 -109396916 - L1MB7 LINE L1 -4730 1654 1514 * 324 78 78 0 chrX 67577227 67577278 -109396862 - L1PA15-16 LINE L1 -4247 2602 2548 1301 298 3 3 chrX 67577322 67577661 -109396479 - L1PA13 LINE L1 -6301 486 148 3662 202 13 14 chrX 67577685 67578466 -109395674 - L1PA16 LINE L1 -2 6164 5385 * 6521 66 2 0 chrX 67578463 67579294 -109394846 - L1PA6 LINE L1 0 6154 5322 * 10162 84 2 4 chrX 67579291 67580695 -109393445 - L1PA16 LINE L1 -778 5368 3968 3315 163 2 27 chrX 67580693 67581330 -109392810 + L1P LINE L1 1013 1633 -4513 * 2539 265 42 31 chrX 67581340 67583123 -109391017 - L1M4 LINE L1 -782 5881 15 491 160 0 0 chrX 67583259 67583359 -109390781 - L1PA15 LINE L1 0 6165 6066 2246 104 3 0 chrX 67583481 67583780 -109390360 + AluSp SINE Alu 1 300 -13 272 342 53 0 chrX 67584146 67584222 -109389918 + L2 LINE L2 3202 3281 -32 478 372 30 9 chrX 67584731 67584962 -109389178 + MIR SINE MIR 27 262 0 589 339 12 20 chrX 67584976 67585221 -109388919 + MIR SINE MIR 20 262 0 291 357 63 21 chrX 67585564 67585707 -109388433 - MIR3 SINE MIR -16 192 44 767 260 15 25 chrX 67586379 67586583 -109387557 + MIR SINE MIR 49 250 -12 617 275 132 29 chrX 67588130 67588648 -109385492 + L1ME LINE L1 526 1064 -5016 1891 243 39 58 chrX 67588654 67589495 -109384645 + L1ME LINE L1 2066 2890 -3190 756 298 43 18 chrX 67589502 67589828 -109384312 + L1ME LINE L1 3242 3575 -2505 576 282 35 0 chrX 67589853 67589994 -109384146 + MER41C LTR ERV1 2 147 -407 2272 159 34 29 chrX 67589994 67590544 -109383596 + MLT2A2 LTR ERVL 1 554 0 657 220 129 119 chrX 67590544 67590951 -109383189 + MER41D LTR ERV1 144 557 0 1574 286 23 29 chrX 67590977 67591628 -109382512 + L1ME LINE L1 3618 4264 -1816 655 192 46 0 chrX 67591628 67591758 -109382382 + AluJo SINE Alu 1 136 -176 1349 287 33 16 chrX 67591792 67592430 -109381710 + L1ME LINE L1 4298 4946 -1134 380 82 16 0 chrX 67592440 67592501 -109381639 + (CA)n Simple_repeat Simple_repeat 2 63 0 424 215 20 13 chrX 67592520 67592670 -109381470 + L1MD2 LINE L1 6021 6151 -15 231 373 0 11 chrX 67592687 67592864 -109381276 + A-rich Low_complexity Low_complexity 4 178 0 * 250 347 8 8 chrX 67592761 67592882 -109381258 + GA-rich Low_complexity Low_complexity 2 122 0 300 287 6 48 chrX 67592911 67593078 -109381062 + GA-rich Low_complexity Low_complexity 2 161 0 213 174 20 51 chrX 67593089 67593187 -109380953 + GA-rich Low_complexity Low_complexity 4 98 0 1469 159 42 95 chrX 67593655 67593814 -109380326 - L1MA5 LINE L1 0 6300 6134 1355 191 58 11 chrX 67593814 67593971 -109380169 - AluJo SINE Alu -21 291 114 315 0 0 0 chrX 67593971 67594006 -109380134 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1355 191 58 11 chrX 67594006 67594126 -109380014 - AluJo SINE Alu -198 114 1 1469 159 42 95 chrX 67594126 67594344 -109379796 - L1MA5 LINE L1 -166 6134 5943 * 2678 126 23 9 chrX 67594342 67594777 -109379363 + L1MA5 LINE L1 5494 5934 -366 516 323 14 9 chrX 67596941 67597164 -109376976 - MARNA DNA Mariner -51 535 312 260 370 32 48 chrX 67597198 67597387 -109376753 + L3 LINE CR1 133 318 -1259 516 344 80 13 chrX 67597487 67597711 -109376429 - MIR SINE MIR -4 258 20 456 354 89 16 chrX 67598020 67598401 -109375739 - L1ME3A LINE L1 -218 5952 5544 245 313 49 7 chrX 67598402 67598546 -109375594 - L1ME3A LINE L1 -666 5496 5347 387 331 54 43 chrX 67598616 67599358 -109374782 - L1ME3A LINE L1 -913 5233 4484 638 24 24 0 chrX 67599362 67599445 -109374695 + (TTTTA)n Simple_repeat Simple_repeat 3 87 0 1683 123 4 0 chrX 67599464 67599699 -109374441 - AluSx SINE Alu -76 236 1 2090 187 80 4 chrX 67600137 67600624 -109373516 - L1MA5 LINE L1 -6 6294 5771 5298 212 18 27 chrX 67600634 67602679 -109371461 - L1PA16 LINE L1 -9 6157 4126 7249 43 2 0 chrX 67602679 67603601 -109370539 + L1PA4 LINE L1 5229 6152 -3 5298 212 18 27 chrX 67603601 67603893 -109370247 - L1PA16 LINE L1 -2040 4126 3833 15293 58 0 0 chrX 67603909 67606623 -109367517 - L1PA5 LINE L1 -5 6149 3441 6425 142 11 2 chrX 67606631 67607611 -109366529 + HSMAR1 DNA Mariner 289 1277 -10 2072 197 19 34 chrX 67607616 67608145 -109365995 + L1MA9 LINE L1 5792 6312 0 2273 246 50 19 chrX 67608151 67609085 -109365055 + L1MD2 LINE L1 2489 3458 -3082 1008 266 6 62 chrX 67609119 67609442 -109364698 - MLT1D LTR MaLR -180 325 21 2730 217 63 19 chrX 67609479 67610300 -109363840 + L1MD2 LINE L1 5633 6523 -230 333 0 0 0 chrX 67610303 67610340 -109363800 + (CA)n Simple_repeat Simple_repeat 2 38 0 228 337 83 16 chrX 67610374 67610567 -109363573 + MIR SINE MIR 49 254 -8 290 312 89 25 chrX 67610842 67610999 -109363141 - MIR3 SINE MIR -7 201 35 6058 243 25 22 chrX 67611257 67612336 -109361804 + L1P4 LINE L1 3655 4730 -1830 2255 108 7 0 chrX 67612336 67612642 -109361498 - AluSx SINE Alu -4 308 1 6058 243 25 22 chrX 67612642 67612715 -109361425 + L1P4 LINE L1 4730 4801 -1759 1753 172 4 0 chrX 67612715 67613062 -109361078 + AluSx SINE Alu 4 351 0 6058 243 25 22 chrX 67613062 67613938 -109360202 + L1P4 LINE L1 4801 5685 -875 6611 43 0 1 chrX 67613938 67614744 -109359396 + L1PA4 LINE L1 5349 6153 -2 6058 243 25 22 chrX 67614744 67615058 -109359082 + L1P4 LINE L1 5685 5997 -563 5801 67 0 0 chrX 67615054 67615812 -109358328 - L1P LINE L1 -2194 3952 3195 * 10583 38 6 1 chrX 67615813 67617874 -109356266 + L1PA4 LINE L1 4089 6153 -2 4115 243 18 11 chrX 67617888 67619000 -109355140 + L1P LINE L1 3204 4323 -1823 4257 54 2 2 chrX 67619005 67619540 -109354600 - L1PA7 LINE L1 -4 6150 5616 6362 38 0 6 chrX 67619540 67620435 -109353705 + L1PA3 LINE L1 5152 6155 0 329 110 0 82 chrX 67620435 67620508 -109353632 + L1P LINE L1 5280 5346 -826 251 229 49 0 chrX 67620717 67620778 -109353362 + Tigger5 DNA MER2_type 2254 2317 -6 363 250 0 0 chrX 67620784 67620860 -109353280 - Tigger5 DNA MER2_type -2244 79 4 1226 296 117 30 chrX 67621211 67621251 -109352889 + MLT1E2 LTR MaLR 42 77 -549 2388 141 8 3 chrX 67621251 67621613 -109352527 + THE1B LTR MaLR 1 364 0 1226 296 117 30 chrX 67621613 67622110 -109352030 + MLT1E2 LTR MaLR 77 626 0 1776 154 32 43 chrX 67622204 67622580 -109351560 + THE1C LTR MaLR 2 373 -2 1057 325 34 24 chrX 67622967 67623383 -109350757 + L1M3c LINE L1 1 420 -5721 1338 251 40 13 chrX 67624065 67624464 -109349676 + L1M3c LINE L1 721 1179 -4962 3230 52 0 0 chrX 67624467 67624870 -109349270 + L1PA4 LINE L1 5748 6150 -5 310 272 43 11 chrX 67624992 67625084 -109349056 - L1MC/D LINE L1 -2239 5569 5475 1852 128 205 8 chrX 67625129 67625480 -109348660 + MSTA LTR MaLR 1 420 -8 23 0 0 0 chrX 67625587 67625610 -109348530 + AT_rich Low_complexity Low_complexity 1 23 0 729 355 83 52 chrX 67625892 67626751 -109347389 + L2 LINE L2 2387 3271 -1 297 67 22 0 chrX 67626790 67626835 -109347305 + HSMAR2 DNA Mariner 6 51 -1251 2242 115 12 24 chrX 67626835 67627452 -109346688 - L1P4 LINE L1 -577 5591 4992 3956 124 10 3 chrX 67627452 67628040 -109346100 + L1PA10 LINE L1 5554 6148 -20 189 0 0 0 chrX 67628040 67628061 -109346079 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 7279 161 14 3 chrX 67628072 67629311 -109344829 + HSMAR2 DNA Mariner 50 1302 0 617 303 42 46 chrX 67629314 67629621 -109344519 + L2 LINE L2 3008 3313 0 7147 38 40 3 chrX 67630245 67631110 -109343030 - MER11D LTR ERVK 0 897 1 1457 197 69 3 chrX 67632882 67633186 -109340954 - MLT1E2 LTR MaLR 0 626 303 247 325 24 0 chrX 67633480 67633563 -109340577 - MIR SINE MIR -113 149 65 1132 257 36 70 chrX 67634756 67635168 -109338972 + MLT1D LTR MaLR 1 398 -107 2825 37 0 14 chrX 67635175 67635524 -109338616 + LTR14A LTR ERVK 1 344 0 1399 167 31 104 chrX 67635524 67635907 -109338233 + MLT2B3 LTR ERVL 5 359 -195 43021 32 21 1 chrX 67635907 67641939 -109332201 + L1HS LINE L1 1 6155 0 789 226 24 52 chrX 67641960 67642172 -109331968 + MLT2B3 LTR ERVL 349 554 0 718 147 0 0 chrX 67642172 67642288 -109331852 + MLT1D LTR MaLR 390 505 0 835 237 6 0 chrX 67642559 67642728 -109331412 + AluJo SINE Alu 122 291 -21 519 294 90 20 chrX 67642738 67642983 -109331157 - L2 LINE L2 -72 3241 2980 2625 220 45 52 chrX 67643898 67643998 -109330142 - L1MB7 LINE L1 -47 6137 6038 1782 76 0 5 chrX 67643998 67644221 -109329919 + AluSx SINE Alu 1 222 -90 2625 220 45 52 chrX 67644221 67644971 -109329169 - L1MB7 LINE L1 -146 6038 5293 3721 214 13 25 chrX 67644985 67645779 -109328361 + MSTA-int LTR MaLR 854 1637 -14 2298 137 64 15 chrX 67645793 67646201 -109327939 + MSTA LTR MaLR 1 428 0 10579 220 21 43 chrX 67646211 67647224 -109326916 + L1PA15-16 LINE L1 2758 3792 -3057 2084 108 0 0 chrX 67647224 67647493 -109326647 - AluSg SINE Alu -20 290 22 10579 220 21 43 chrX 67647493 67647682 -109326458 + L1PA15-16 LINE L1 3792 3984 -2865 1960 128 3 20 chrX 67647682 67647978 -109326162 + AluSx SINE Alu 7 297 -15 10579 220 21 43 chrX 67647978 67648487 -109325653 + L1PA15-16 LINE L1 3984 4503 -2346 384 22 0 0 chrX 67648487 67648532 -109325608 + (CA)n Simple_repeat Simple_repeat 1 45 0 10579 220 21 43 chrX 67648532 67649831 -109324309 + L1PA15-16 LINE L1 4503 5703 -1146 660 241 36 0 chrX 67649827 67649993 -109324147 + L1PA15 LINE L1 6697 6868 0 * 2548 204 41 52 chrX 67650006 67650575 -109323565 - L1MA7 LINE L1 -205 6086 5525 2153 199 29 9 chrX 67650575 67651023 -109323117 - MSTB2 LTR MaLR 0 457 1 2548 204 41 52 chrX 67651023 67651163 -109322977 - L1MA7 LINE L1 -766 5525 5385 * 3678 243 38 17 chrX 67651139 67651358 -109322782 - L1MA7 LINE L1 -2210 3936 3723 1748 238 60 54 chrX 67651358 67651909 -109322231 + MLT2B3 LTR ERVL 1 554 0 3678 243 38 17 chrX 67651909 67652917 -109321223 - L1MA7 LINE L1 -2423 3723 2683 9859 183 88 3 chrX 67652928 67655865 -109318275 + L1MA3 LINE L1 25 3256 -4309 5748 180 38 17 chrX 67655861 67658044 -109316096 + L1MA3 LINE L1 5335 7564 -160 * 2260 200 62 69 chrX 67658097 67658438 -109315702 - L1M4 LINE L1 -1156 4990 4648 2237 120 0 3 chrX 67658438 67658747 -109315393 - AluSc SINE Alu -1 308 1 2260 200 62 69 chrX 67658747 67658991 -109315149 - L1M4 LINE L1 -1498 4648 4404 2034 116 0 4 chrX 67658991 67659268 -109314872 - AluSg SINE Alu -32 278 3 2260 200 62 69 chrX 67659268 67659520 -109314620 - L1M4 LINE L1 -1742 4404 4158 417 322 6 6 chrX 67659536 67659716 -109314424 - MLT1-int LTR MaLR -794 577 398 200 328 0 16 chrX 67661247 67661308 -109312832 - L2 LINE L2 0 3313 3254 284 261 0 14 chrX 67661453 67661522 -109312618 - L2 LINE L2 -4 3268 3201 2452 274 40 31 chrX 67661526 67663139 -109311001 - L1M4 LINE L1 -935 5709 15 486 160 0 0 chrX 67663275 67663375 -109310765 - L1PA15 LINE L1 0 6165 6066 2278 104 3 0 chrX 67663497 67663796 -109310344 + AluSp SINE Alu 1 300 -13 268 342 53 0 chrX 67664163 67664239 -109309901 + L2 LINE L2 3202 3281 -32 459 372 30 9 chrX 67664748 67664979 -109309161 + MIR SINE MIR 27 262 0 585 339 12 20 chrX 67664993 67665238 -109308902 + MIR SINE MIR 20 262 0 287 357 63 21 chrX 67665581 67665724 -109308416 - MIR3 SINE MIR -16 192 44 758 260 15 25 chrX 67666396 67666600 -109307540 + MIR SINE MIR 49 250 -12 206 367 31 0 chrX 67666926 67667024 -109307116 - L3 LINE CR1 -174 1403 1303 683 353 86 18 chrX 67667064 67667577 -109306563 - L3 LINE CR1 -286 1291 744 3022 270 95 55 chrX 67668157 67669157 -109304983 + L1M4c LINE L1 611 1570 -5074 1320 211 7 47 chrX 67669157 67669488 -109304652 + AluJb SINE Alu 4 322 0 3022 270 95 55 chrX 67669488 67669809 -109304331 + L1M4c LINE L1 1570 1877 -4767 2087 126 3 0 chrX 67669809 67670110 -109304030 + AluSx SINE Alu 1 302 -10 3022 270 95 55 chrX 67670110 67671144 -109302996 + L1M4c LINE L1 1877 3052 -3592 624 188 53 6 chrX 67671156 67671326 -109302814 - L1MA9 LINE L1 -2 6310 6133 1605 258 76 10 chrX 67671347 67672067 -109302073 - L1M4 LINE L1 -2833 3313 2546 325 247 13 0 chrX 67672066 67672143 -109301997 + L1M2 LINE L1 5634 5711 -601 * 6254 197 23 9 chrX 67672278 67673559 -109300581 + HSMAR2 DNA Mariner 3 1300 -2 4045 254 42 25 chrX 67673572 67673948 -109300192 + L1M1 LINE L1 2787 3155 -4410 1641 165 57 0 chrX 67673948 67674227 -109299913 + AluSx SINE Alu 1 295 -17 4045 254 42 25 chrX 67674227 67676138 -109298002 + L1M1 LINE L1 3155 5120 -2445 6454 91 14 1 chrX 67676198 67677515 -109296625 + L1PA10 LINE L1 4834 6168 0 1706 321 26 48 chrX 67677535 67678454 -109295686 + L1PA13 LINE L1 12 1423 -5364 293 0 27 0 chrX 67678464 67678501 -109295639 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 5726 168 24 6 chrX 67678501 67680221 -109293919 - L1PB1 LINE L1 -6 6145 4395 207 0 0 0 chrX 67680221 67680244 -109293896 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5726 168 24 6 chrX 67680244 67680533 -109293607 - L1PB1 LINE L1 -1756 4395 4112 * 7825 243 18 110 chrX 67680516 67684184 -109289956 + L1PA13 LINE L1 1406 4830 -1967 1427 182 0 0 chrX 67684184 67684415 -109289725 + AluSq SINE Alu 1 231 -82 7825 243 18 110 chrX 67684415 67685111 -109289029 + L1PA13 LINE L1 4830 5588 -1209 6022 230 62 40 chrX 67685371 67687034 -109287106 + MER52A LTR ERV1 55 1755 0 3188 156 68 2 chrX 67687042 67687446 -109286694 + MER52A-int LTR ERV1 10 459 -6632 255 31 0 0 chrX 67687446 67687478 -109286662 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 3188 156 68 2 chrX 67687478 67687600 -109286540 + MER52A-int LTR ERV1 459 571 -6520 9379 166 33 4 chrX 67687719 67689239 -109284901 + MER52A-int LTR ERV1 1702 3265 -3826 5233 163 27 29 chrX 67689239 67690178 -109283962 + MER50-int LTR ERV1 623 1559 -5532 283 250 26 26 chrX 67690176 67690252 -109283888 + MER50-int LTR ERV1 1713 1788 -5417 * 848 129 13 45 chrX 67690317 67690472 -109283668 + MER50-int LTR ERV1 990 1139 -4807 5187 180 57 84 chrX 67690478 67691959 -109282181 + MER50-int LTR ERV1 968 2488 -4930 2284 100 0 0 chrX 67691959 67692260 -109281880 + AluSc SINE Alu 1 301 -8 5187 180 57 84 chrX 67692260 67692794 -109281346 + MER50-int LTR ERV1 2488 5537 -1881 779 126 14 14 chrX 67692794 67692937 -109281203 + MER50-int LTR ERV1 4548 4690 -1256 256 204 0 19 chrX 67692942 67692996 -109281144 + MER50-int LTR ERV1 5976 6028 -1177 * 656 140 79 9 chrX 67692994 67693108 -109281032 + MER50-int LTR ERV1 6892 7013 -78 2677 82 36 15 chrX 67693108 67693500 -109280640 + MLT2A1 LTR ERVL 1 400 -44 508 127 0 0 chrX 67693500 67693579 -109280561 + MLT2A1 LTR ERVL 326 404 -40 394 179 32 21 chrX 67693605 67693700 -109280440 + L1PA15-16 LINE L1 2570 2665 -4184 350 78 0 0 chrX 67693731 67693782 -109280358 + MLT2A1 LTR ERVL 394 444 0 21165 116 23 31 chrX 67693782 67697209 -109276931 + HERVL-A1-A1 LTR ERVL 1 3401 -2253 15189 92 6 0 chrX 67697201 67699205 -109274935 + HERVL-A1-A1 LTR ERVL 3639 5654 0 * 2667 95 28 15 chrX 67699205 67699604 -109274536 + MLT2A1 LTR ERVL 1 404 -40 233 122 0 0 chrX 67699755 67699796 -109274344 - MER52C LTR ERV1 -902 376 336 239 263 18 0 chrX 67700014 67700071 -109274069 - MER52A LTR ERV1 -1697 58 1 546 158 0 0 chrX 67700071 67700153 -109273987 - MER52A-int LTR ERV1 0 7091 7010 291 124 21 0 chrX 67700153 67700209 -109273931 - MLT2D LTR ERVL 0 414 367 203 161 0 0 chrX 67700209 67700240 -109273900 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 371 278 0 0 chrX 67700240 67700330 -109273810 - L1MC4 LINE L1 -1339 6703 6614 3931 198 35 18 chrX 67700341 67701217 -109272923 + L1PA15 LINE L1 5273 6163 -2 5863 208 57 6 chrX 67701227 67702153 -109271987 + L1MA4 LINE L1 3703 4580 -1720 315 0 0 0 chrX 67702153 67702188 -109271952 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 5863 208 57 6 chrX 67702188 67703712 -109270428 + L1MA4 LINE L1 4580 6279 -21 702 314 42 19 chrX 67703820 67704253 -109269887 + L1M4c LINE L1 1413 1855 -4529 25 65 0 0 chrX 67704273 67704319 -109269821 + AT_rich Low_complexity Low_complexity 1 46 0 1769 201 24 12 chrX 67704420 67704753 -109269387 - MER1B DNA MER1_type 0 337 1 1013 269 25 12 chrX 67704803 67705262 -109268878 + L1M1 LINE L1 3501 3967 -3598 952 129 25 6 chrX 67705328 67705491 -109268649 - THE1C-int LTR MaLR -1414 166 1 2223 164 11 0 chrX 67705491 67705862 -109268278 - THE1C LTR MaLR 0 375 1 2547 248 82 9 chrX 67705862 67706913 -109267227 + L1M1 LINE L1 3984 5111 -2454 1467 184 39 39 chrX 67706972 67707357 -109266783 - MER83B-int LTR ERV1 -1680 4266 3882 602 184 0 9 chrX 67707502 67707621 -109266519 - MER83B-int LTR ERV1 -2202 3174 2573 769 186 24 46 chrX 67707623 67707768 -109266372 - MER83B-int LTR ERV1 -2282 3078 2931 1936 133 0 0 chrX 67707768 67708083 -109266057 - AluSx SINE Alu 0 334 20 769 186 24 46 chrX 67708083 67708171 -109265969 - MER83B-int LTR ERV1 -2429 2931 2372 839 149 6 35 chrX 67708208 67708377 -109265763 - MER83B-int LTR ERV1 -344 4536 3731 3280 250 54 50 chrX 67708414 67709532 -109264608 - MER83B-int LTR ERV1 -486 4394 3388 1969 140 0 0 chrX 67709532 67709818 -109264322 + AluSx SINE Alu 1 286 -26 3280 250 54 50 chrX 67709818 67710975 -109263165 - MER83B-int LTR ERV1 -1492 3388 2236 312 70 0 0 chrX 67712003 67712046 -109262094 + (TAG)n Simple_repeat Simple_repeat 1 43 0 1078 225 33 22 chrX 67712055 67712331 -109261809 - LTR43 LTR ERV1 -137 465 187 1340 143 22 0 chrX 67712450 67712674 -109261466 + L1PA15 LINE L1 5930 6158 -7 6397 197 20 45 chrX 67712709 67713735 -109260405 + L1MA4 LINE L1 5103 6052 -1667 389 102 0 0 chrX 67713735 67713775 -109260365 + L1PA12 LINE L1 6109 6167 -1 6397 197 20 45 chrX 67713775 67714708 -109259432 + L1MA4 LINE L1 6052 7007 -712 14609 109 24 3 chrX 67714709 67717755 -109256385 - L1PA8 LINE L1 0 6487 3400 10366 148 31 26 chrX 67717755 67720654 -109253486 - L1PA8 LINE L1 -3511 2950 10 951 209 30 0 chrX 67720685 67720886 -109253254 + L1MA4 LINE L1 7006 7212 -507 1984 178 63 2 chrX 67720895 67721310 -109252830 + L1MA4 LINE L1 7275 7714 -5 269 346 51 64 chrX 67721539 67721695 -109252445 - MIR3 SINE MIR -13 195 42 897 244 39 35 chrX 67721976 67722234 -109251906 - LTR53 LTR ERVL -260 259 1 425 336 13 13 chrX 67722317 67722466 -109251674 + L1 LINE L1 2 150 -5991 1315 203 43 3 chrX 67722812 67723112 -109251028 - L1P LINE L1 -1390 4756 4445 3852 172 27 14 chrX 67723117 67723897 -109250243 + L1P LINE L1 3635 4424 -1722 3859 220 24 12 chrX 67723905 67724901 -109249239 + L1 LINE L1 3420 4427 -1783 1304 217 7 29 chrX 67724914 67725186 -109248954 + MLT1E2 LTR MaLR 361 626 0 381 289 35 9 chrX 67725188 67725302 -109248838 + L2 LINE L2 3147 3263 -9 349 241 60 45 chrX 67726540 67726673 -109247467 - L2 LINE L2 -9 3304 3170 22 0 0 0 chrX 67726915 67726937 -109247203 + AT_rich Low_complexity Low_complexity 1 22 0 1212 161 31 0 chrX 67726949 67727203 -109246937 - L1MA7 LINE L1 -2 6289 6028 365 337 52 0 chrX 67727461 67727633 -109246507 - MIR SINE MIR -16 246 66 6547 253 49 22 chrX 67728179 67730539 -109243601 - L1MB4 LINE L1 -39 6377 4082 2560 189 103 10 chrX 67730539 67730578 -109243562 - MLT2B3 LTR ERVL 0 554 520 224 0 0 61 chrX 67730578 67730611 -109243529 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 2560 189 103 10 chrX 67730611 67731078 -109243062 - MLT2B3 LTR ERVL -34 520 1 6547 253 49 22 chrX 67731078 67732301 -109241839 - L1MB4 LINE L1 -2334 4082 2673 183 42 0 0 chrX 67732301 67732325 -109241815 + (TA)n Simple_repeat Simple_repeat 1 24 0 6547 253 49 22 chrX 67732325 67732424 -109241716 - L1MB4 LINE L1 -3743 2673 2578 1755 226 65 6 chrX 67732726 67733200 -109240940 - L1MB4 LINE L1 -4906 1478 977 1173 133 6 0 chrX 67733433 67733599 -109240541 - AluSg/x SINE Alu -22 290 124 1333 248 13 20 chrX 67733603 67733998 -109240142 - L1M4c LINE L1 -4505 1879 1488 1800 151 4 4 chrX 67733998 67734269 -109239871 - AluSx SINE Alu -39 273 3 2337 85 7 3 chrX 67735115 67735420 -109238720 + AluSc SINE Alu 1 306 -3 711 307 63 61 chrX 67736049 67736443 -109237697 - L2 LINE L2 0 3313 2919 1434 112 6 159 chrX 67736483 67736916 -109237224 + Tigger2 DNA MER2_type 1 2622 -96 15295 241 25 34 chrX 67736918 67737590 -109236550 - L1PA15 LINE L1 -6 7597 6920 189 0 0 0 chrX 67737590 67737611 -109236529 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 15295 241 25 34 chrX 67737611 67738606 -109235534 - L1PA15 LINE L1 -683 6920 5918 2426 87 0 3 chrX 67738606 67738915 -109235225 - AluSq SINE Alu -5 308 1 15295 241 25 34 chrX 67738915 67744843 -109229297 - L1PA15 LINE L1 -1685 5918 102 273 267 27 68 chrX 67744893 67745039 -109229101 - L1PA12 LINE L1 -5690 1891 1752 476 200 95 0 chrX 67745074 67745169 -109228971 + Tigger2 DNA MER2_type 2615 2718 0 181 348 67 44 chrX 67745185 67745320 -109228820 + MIR SINE MIR 2 139 -123 222 359 103 0 chrX 67745369 67745486 -109228654 + L2 LINE L2 3143 3271 -1 333 118 0 0 chrX 67745498 67745549 -109228591 + (TA)n Simple_repeat Simple_repeat 1 51 0 563 332 20 5 chrX 67745814 67746013 -109228127 - MIR SINE MIR -56 206 5 2244 118 0 3 chrX 67747774 67748080 -109226060 - AluSg SINE Alu -5 305 1 336 348 68 35 chrX 67748316 67748655 -109225485 + HAL1 LINE L1 267 616 -1891 345 262 87 6 chrX 67748740 67748923 -109225217 + HAL1 LINE L1 1454 1651 -856 189 337 50 0 chrX 67749084 67749185 -109224955 - L2 LINE L2 -1467 1847 1742 779 268 89 69 chrX 67749331 67749678 -109224462 - MLT1J LTR MaLR -92 419 66 234 355 43 0 chrX 67749824 67749917 -109224223 - LTR16A1 LTR ERVL -357 100 4 250 300 12 0 chrX 67750814 67750894 -109223246 + LTR58 LTR ERV1 349 429 -250 1295 81 38 0 chrX 67751053 67751238 -109222902 + L1PA10 LINE L1 5966 6157 -11 426 144 41 0 chrX 67751937 67752034 -109222106 - Charlie5 DNA MER1_type -127 2485 2385 2453 139 38 26 chrX 67752044 67752541 -109221599 - L1MA7 LINE L1 0 6291 5789 219 273 0 0 chrX 67752543 67752598 -109221542 + (TA)n Simple_repeat Simple_repeat 2 56 0 286 250 14 0 chrX 67752617 67752689 -109221451 - L1MA7 LINE L1 -513 5778 5706 1482 149 31 0 chrX 67752701 67752962 -109221178 - L1MA7 LINE L1 -716 5575 5307 11808 158 24 32 chrX 67752963 67754825 -109219315 + Tigger1 DNA MER2_type 2 1846 -572 3615 70 2 0 chrX 67754825 67755299 -109218841 + L1PA7 LINE L1 5675 6149 -5 11808 158 24 32 chrX 67755299 67755623 -109218517 + Tigger1 DNA MER2_type 1846 2171 -247 651 249 96 3 chrX 67755649 67756048 -109218092 + L1MD2 LINE L1 5437 5872 -487 * 1303 223 18 51 chrX 67756041 67756432 -109217708 + L1MC3 LINE L1 6049 6426 -1359 193 389 124 0 chrX 67756865 67756978 -109217162 + L2 LINE L2 3137 3263 -9 262 309 13 20 chrX 67757230 67757382 -109216758 + GA-rich Low_complexity Low_complexity 3 153 0 4580 228 33 56 chrX 67857574 67859544 -109114596 - L1P3 LINE L1 -4512 1939 1 309 336 37 37 chrX 67861395 67861612 -109112528 + LTR16C LTR ERVL 252 468 -23 315 312 64 7 chrX 67863508 67863649 -109110491 + MIR SINE MIR 3 151 -111 1254 300 13 0 chrX 67865258 67865631 -109108509 + HERV16 LTR ERVL 1016 1393 -3603 212 149 21 0 chrX 67865728 67865775 -109108365 + (TA)n Simple_repeat Simple_repeat 1 48 0 1608 166 22 7 chrX 67866008 67866286 -109107854 - AluJb SINE Alu -30 282 1 4730 146 22 5 chrX 67868396 67869262 -109104878 - L1MA2 LINE L1 -19 6285 5405 19901 33 1 2 chrX 67869365 67872330 -109101810 - L1P2 LINE L1 -358 7235 4274 7041 114 23 20 chrX 67872325 67873548 -109100592 - L1P2 LINE L1 -4378 3206 1150 * 250 183 28 0 chrX 67874156 67874227 -109099913 + (TG)n Simple_repeat Simple_repeat 2 74 0 4555 56 12 2 chrX 67874543 67875128 -109099012 + LTR10C LTR ERV1 1 591 0 519 209 0 7 chrX 67875859 67875998 -109098142 - L1MA2 LINE L1 -907 5239 5102 1049 198 141 113 chrX 67876000 67876110 -109098030 + MSTA LTR MaLR 1 106 -322 248 53 26 0 chrX 67876110 67876148 -109097992 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1049 198 141 113 chrX 67876148 67876400 -109097740 + MSTA LTR MaLR 106 426 -2 378 222 0 0 chrX 67876402 67876483 -109097657 + MSTA-int LTR MaLR 1 81 -1570 2284 105 0 3 chrX 67876484 67876789 -109097351 + AluY SINE Alu 2 305 -6 1662 220 5 96 chrX 67876792 67877245 -109096895 + L1 LINE L1 4488 4864 -1282 2053 135 0 0 chrX 67877245 67877527 -109096613 + AluSx SINE Alu 3 284 -28 1662 220 5 96 chrX 67877527 67877733 -109096407 + L1 LINE L1 4864 5087 -1059 985 167 92 8 chrX 67877750 67877990 -109096150 - MSTA LTR MaLR 0 428 169 3098 51 2 20 chrX 67878149 67878598 -109095542 - LTR7 LTR ERV1 -9 441 1 1004 329 7 5 chrX 67878650 67879069 -109095071 - L1PA12 LINE L1 -4983 2598 2179 2438 48 0 7 chrX 67879358 67879651 -109094489 - AluY SINE Alu -20 291 1 467 287 86 11 chrX 67879841 67880015 -109094125 + L2 LINE L2 3094 3280 -33 405 275 11 0 chrX 67880306 67880397 -109093743 - MER5B DNA MER1_type -12 166 75 5520 182 49 15 chrX 67880514 67882819 -109091321 - L1 LINE L1 -2702 4863 2479 7027 135 25 16 chrX 67882919 67884162 -109089978 + MER57A-int LTR ERV1 5677 6930 -607 372 99 42 148 chrX 67884454 67884596 -109089544 + LTR54B LTR ERV1 5 131 -367 1102 118 209 5 chrX 67884596 67884807 -109089333 + MER57A-int LTR ERV1 7279 7532 -5 2053 195 8 0 chrX 67884811 67885211 -109088929 + MER57A LTR ERV1 1 403 0 25 0 0 0 chrX 67885377 67885402 -109088738 + AT_rich Low_complexity Low_complexity 1 25 0 2117 143 19 35 chrX 67885694 67886064 -109088076 + THE1B LTR MaLR 1 364 0 450 293 7 0 chrX 67886264 67886411 -109087729 + L1M2b LINE L1 496 643 -6566 570 402 9 31 chrX 67887092 67887550 -109086590 + L1M2b LINE L1 1160 1607 -5602 2224 255 33 18 chrX 67887552 67888431 -109085709 + L1M2b LINE L1 1812 2703 -4506 2450 162 19 14 chrX 67888431 67888857 -109085283 - MSTA LTR MaLR 0 428 1 5423 185 18 32 chrX 67888857 67890028 -109084112 - MSTA-int LTR MaLR 0 1580 427 1152 188 35 0 chrX 67890072 67890301 -109083839 - MSTA LTR MaLR 0 428 192 450 250 0 0 chrX 67890315 67890443 -109083697 + L1M2b LINE L1 3488 3615 -3593 879 161 12 6 chrX 67890472 67890634 -109083506 - MSTA LTR MaLR -265 163 1 2164 256 24 25 chrX 67890636 67891742 -109082398 + L1M2 LINE L1 2341 3451 -3397 2339 91 3 0 chrX 67891742 67892039 -109082101 - AluSp SINE Alu -15 298 1 2164 256 24 25 chrX 67892039 67892104 -109082036 + L1M2 LINE L1 3451 3515 -3333 6532 41 34 0 chrX 67892109 67892937 -109081203 - MER11D LTR ERVK 0 897 42 27 29 0 0 chrX 67893222 67893256 -109080884 + AT_rich Low_complexity Low_complexity 1 34 0 1579 126 5 79 chrX 67893566 67893939 -109080201 - MER4A LTR ERV1 0 664 261 505 144 21 10 chrX 67893939 67894036 -109080104 - MER4A LTR ERV1 -566 98 1 217 263 63 63 chrX 67895421 67895516 -109078624 + MIR SINE MIR 51 145 -63 243 367 0 13 chrX 67895684 67895842 -109078298 + MER117 DNA MER1_type 11 166 -31 712 110 62 48 chrX 67896150 67896296 -109077844 + MER34 LTR ERV1 59 206 -336 426 156 211 39 chrX 67896298 67896426 -109077714 - MER66A-int LTR ERV1 -1969 4707 4558 389 244 23 0 chrX 67896427 67896513 -109077627 - MER4D LTR ERV1 -712 160 73 1078 162 0 101 chrX 67896516 67896794 -109077346 - MER66A-int LTR ERV1 -2246 4430 4181 362 227 0 10 chrX 67896815 67896912 -109077228 - MER66A-int LTR ERV1 -5452 1224 1129 1827 230 99 87 chrX 67897044 67897908 -109076232 - MER66A-int LTR ERV1 -5799 877 3 1189 213 96 45 chrX 67897911 67898264 -109075876 - MER66A LTR ERV1 0 478 108 4494 263 35 39 chrX 67898375 67900269 -109073871 - L1PA12 LINE L1 -4753 2828 528 2941 172 8 2 chrX 67900272 67900771 -109073369 - L1PA12 LINE L1 -7077 504 3 319 208 39 0 chrX 67901033 67901110 -109073030 - LTR43 LTR ERV1 -336 266 187 5635 233 31 29 chrX 67901640 67903498 -109070642 + L1 LINE L1 2622 4483 -1663 1051 285 40 87 chrX 67903606 67904161 -109069979 - L2 LINE L2 -605 2709 2181 1481 312 160 18 chrX 67904348 67905238 -109068902 - L2 LINE L2 -1076 2238 1223 2372 86 7 0 chrX 67905544 67905845 -109068295 + AluSc SINE Alu 1 303 -6 228 284 12 25 chrX 67906470 67906551 -109067589 - MIR SINE MIR -71 191 112 387 318 53 11 chrX 67907224 67907413 -109066727 + L1ME4a LINE L1 5631 5827 -294 3752 235 17 29 chrX 67907499 67908431 -109065709 + L1M1 LINE L1 15 935 -6630 23 0 0 0 chrX 68008440 68008463 -108965677 + AT_rich Low_complexity Low_complexity 1 23 0 1289 285 52 12 chrX 68008464 68008980 -108965160 - L1MD3 LINE L1 -12 7983 7447 1717 141 182 22 chrX 68008980 68009349 -108964791 + MSTA LTR MaLR 1 428 0 2308 286 23 72 chrX 68009446 68010668 -108963472 - L1MC3 LINE L1 -684 7101 5940 649 148 7 129 chrX 68010671 68010826 -108963314 + Tigger1 DNA MER2_type 1 136 -2282 1131 154 35 5 chrX 68010834 68011035 -108963105 + Tigger1 DNA MER2_type 2211 2417 -1 862 256 37 25 chrX 68011035 68011253 -108962887 - L1MC3 LINE L1 -2044 5951 5726 2217 116 21 54 chrX 68011253 68011641 -108962499 - THE1C LTR MaLR 0 375 1 862 256 37 25 chrX 68011641 68011746 -108962394 - L1MC3 LINE L1 -2269 5726 5624 1252 216 36 83 chrX 68011763 68012147 -108961993 + MLT1A2 LTR MaLR 8 373 -1 1862 233 30 45 chrX 68012148 68013033 -108961107 - L1MC3 LINE L1 -743 5403 4744 297 75 0 0 chrX 68013074 68013114 -108961026 + (CA)n Simple_repeat Simple_repeat 2 41 0 3512 237 56 21 chrX 68013123 68013984 -108960156 + MER54A LTR ERVL 9 899 -2 2559 284 139 30 chrX 68013985 68015680 -108958460 - L1MC3 LINE L1 -1747 4399 2521 * 12860 227 50 17 chrX 68015678 68021053 -108953087 - L1PA15 LINE L1 -6 6810 1246 225 325 59 16 chrX 68021055 68021378 -108952762 - L1MC3 LINE L1 -3610 2536 2200 1769 244 13 5 chrX 68021384 68021831 -108952309 - L1 LINE L1 -1999 4147 3697 387 0 0 0 chrX 68021832 68021875 -108952265 + (TG)n Simple_repeat Simple_repeat 2 44 0 2666 290 57 90 chrX 68021958 68023781 -108950359 + L1M3d LINE L1 361 1851 -4802 2644 178 12 29 chrX 68023781 68024142 -108949998 - MER84 LTR ERV1 0 507 156 2124 114 3 3 chrX 68024142 68024439 -108949701 + AluSx SINE Alu 1 297 -15 2644 178 12 29 chrX 68024439 68024589 -108949551 - MER84 LTR ERV1 -351 156 5 6481 138 11 15 chrX 68024595 68025635 -108948505 - MER84-int LTR ERV1 -2 4952 3918 9619 137 10 7 chrX 68026160 68026687 -108947453 - MER84-int LTR ERV1 -2544 2410 1886 4847 38 0 0 chrX 68026687 68027270 -108946870 + L1PA4 LINE L1 5573 6155 0 9619 137 10 7 chrX 68027270 68028235 -108945905 - MER84-int LTR ERV1 -3068 1886 914 4849 160 1 3 chrX 68028232 68028993 -108945147 - MER84-int LTR ERV1 -4194 760 1 * 2956 171 8 0 chrX 68028993 68029496 -108944644 - MER84 LTR ERV1 0 507 1 1457 286 68 23 chrX 68029502 68030197 -108943943 + L1M4c LINE L1 1100 1825 -4559 32 43 0 0 chrX 68030299 68030345 -108943795 + AT_rich Low_complexity Low_complexity 1 46 0 251 282 47 34 chrX 68030358 68030507 -108943633 + L1M4c LINE L1 2079 2229 -4155 273 216 23 0 chrX 68030619 68030702 -108943438 + L1M4c LINE L1 2439 2496 -3888 979 261 30 58 chrX 68030730 68031059 -108943081 - MLT1A1 LTR MaLR -9 356 37 640 188 0 8 chrX 68031080 68031197 -108942943 - MLT1A1-int LTR MaLR 0 1735 1620 5971 137 6 3 chrX 68031197 68032820 -108941320 - L1PA10 LINE L1 -21 6147 4521 577 272 103 65 chrX 68032818 68033108 -108941032 - MLT1A1-int LTR MaLR -527 1208 908 * 864 247 4 69 chrX 68033131 68033378 -108940762 - MLT1A1 LTR MaLR -134 231 1 4842 260 80 14 chrX 68033381 68035346 -108938794 + L1M4c LINE L1 2522 4617 -1765 730 244 154 59 chrX 68035346 68035670 -108938470 + MLT1A1 LTR MaLR 1 355 -10 4168 276 105 54 chrX 68035678 68036512 -108937628 + MLT1A1-int LTR MaLR 3 793 -942 2247 166 6 0 chrX 68036512 68036874 -108937266 - THE1B LTR MaLR 0 364 1 9614 149 29 4 chrX 68036874 68038415 -108935725 - THE1B-int LTR MaLR 0 1580 1 2134 164 23 0 chrX 68038417 68038771 -108935369 - THE1B LTR MaLR -2 362 1 4168 276 105 54 chrX 68038771 68039581 -108934559 + MLT1A1-int LTR MaLR 793 1735 0 1455 178 32 40 chrX 68039587 68039891 -108934249 + MER4A-int LTR ERV1 210 553 -6045 228 67 0 0 chrX 68039891 68039921 -108934219 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1455 178 32 40 chrX 68039921 68040060 -108934080 + MER4A-int LTR ERV1 553 692 -5906 275 316 34 51 chrX 68040062 68040179 -108933961 + MER4A-int LTR ERV1 374 488 -6270 1515 136 121 12 chrX 68040299 68040556 -108933584 - AluY SINE Alu -23 288 4 14308 141 83 53 chrX 68040575 68044820 -108929320 + MER4A-int LTR ERV1 782 6598 0 547 155 21 10 chrX 68044822 68044919 -108929221 + MER4A LTR ERV1 1 98 -566 793 167 40 11 chrX 68044919 68045195 -108928945 + MER4B LTR ERV1 261 610 0 3740 236 21 30 chrX 68045195 68046554 -108927586 + L1MA9 LINE L1 4681 6051 -497 375 41 0 0 chrX 68046554 68046603 -108927537 + (CA)n Simple_repeat Simple_repeat 2 50 0 261 0 0 0 chrX 68046602 68046631 -108927509 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 3740 236 21 30 chrX 68046603 68047113 -108927027 + L1MA9 LINE L1 6051 6510 -38 312 180 22 11 chrX 68047113 68047202 -108926938 + GA-rich Low_complexity Low_complexity 3 92 0 2917 261 37 15 chrX 68047202 68047335 -108926805 - L1M4c LINE L1 -2559 3823 3694 2185 114 7 0 chrX 68047335 68047642 -108926498 - AluSx SINE Alu -3 309 1 2917 261 37 15 chrX 68047642 68048547 -108925593 - L1M4c LINE L1 -2688 3694 2763 810 244 117 35 chrX 68048565 68049042 -108925098 - L1M4c LINE L1 -3760 2622 2185 5710 125 18 1 chrX 68049042 68050559 -108923581 - L1PA13 LINE L1 -6 6157 4627 810 244 117 35 chrX 68050559 68050897 -108923243 - L1M4c LINE L1 -4197 2185 1739 398 304 14 0 chrX 68050898 68051046 -108923094 - L1M4c LINE L1 -4769 1615 1466 4261 231 82 7 chrX 68051064 68052314 -108921826 + L1 LINE L1 3817 5160 -986 23 36 0 54 chrX 68052330 68052386 -108921754 + AT_rich Low_complexity Low_complexity 1 53 0 220 356 46 0 chrX 68052740 68052827 -108921313 + MER5B DNA MER1_type 1 91 -87 183 114 0 0 chrX 68054609 68054644 -108919496 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 299 267 69 23 chrX 68055378 68055509 -108918631 - L1MC4a LINE L1 -1879 5929 5793 847 224 102 14 chrX 68055521 68055734 -108918406 + MER33 DNA MER1_type 4 252 -2333 2128 121 0 3 chrX 68055734 68056048 -108918092 - AluSq SINE Alu 0 313 1 847 224 102 14 chrX 68056048 68056129 -108918011 + MER33 DNA MER1_type 252 324 0 480 281 100 27 chrX 68056130 68056539 -108917601 - L1MC4a LINE L1 -330 5791 5334 423 275 50 0 chrX 68056539 68056659 -108917481 - L2 LINE L2 -6 3307 3182 204 97 0 0 chrX 68056677 68056708 -108917432 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 188 86 29 0 chrX 68056774 68056809 -108917331 + (TA)n Simple_repeat Simple_repeat 1 36 0 890 193 12 0 chrX 68056930 68057091 -108917049 - FAM SINE Alu -11 164 2 615 347 28 4 chrX 68057239 68057490 -108916650 + MIR SINE MIR 5 261 -1 21 36 0 0 chrX 68058868 68058896 -108915244 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 68058977 68059002 -108915138 + AT_rich Low_complexity Low_complexity 1 25 0 10264 255 34 10 chrX 68059601 68061131 -108913009 + L1PA16 LINE L1 1354 2847 -3970 2337 84 7 0 chrX 68061131 68061428 -108912712 + AluY SINE Alu 1 299 -12 10264 255 34 10 chrX 68061428 68063926 -108910214 + L1PA16 LINE L1 2847 5578 -1239 2031 134 13 0 chrX 68063926 68064232 -108909908 + AluSx SINE Alu 1 310 -2 10264 255 34 10 chrX 68064232 68065480 -108908660 + L1PA16 LINE L1 5578 6795 -22 24 0 0 0 chrX 68065480 68065504 -108908636 + AT_rich Low_complexity Low_complexity 1 24 0 230 148 34 47 chrX 68065563 68065712 -108908428 + (TTATA)n Simple_repeat Simple_repeat 2 148 0 305 208 8 108 chrX 68065740 68065860 -108908280 + L1MC4 LINE L1 6596 6703 -1339 1883 148 16 60 chrX 68065883 68065900 -108908240 + L1PB1 LINE L1 5777 5793 -380 234 0 0 0 chrX 68065900 68065926 -108908214 + (CA)n Simple_repeat Simple_repeat 2 27 0 1883 148 16 60 chrX 68065926 68066106 -108908034 + L1PB1 LINE L1 5793 5979 -194 2158 91 28 0 chrX 68066106 68066392 -108907748 + AluSq SINE Alu 1 294 -19 1883 148 16 60 chrX 68066392 68066607 -108907533 + L1PB1 LINE L1 5979 6173 0 470 317 20 45 chrX 68068380 68068579 -108905561 - MIR SINE MIR -56 206 13 2174 80 0 26 chrX 68068900 68069202 -108904938 + AluY SINE Alu 3 296 -15 3153 242 39 14 chrX 68069262 68070135 -108904005 - L1MB8 LINE L1 -12 6166 5272 2841 201 44 38 chrX 68070129 68070876 -108903264 - L1MA9 LINE L1 0 6312 5561 * 2549 110 0 0 chrX 68070877 68071231 -108902909 - THE1A LTR MaLR -1 354 1 7889 128 3 3 chrX 68071231 68072368 -108901772 - THE1A-int LTR MaLR 0 1580 443 4095 282 66 25 chrX 68072659 68074892 -108899248 - L1MB8 LINE L1 -860 5286 2963 4761 198 15 10 chrX 68074916 68076436 -108897704 - L1MA4 LINE L1 -6 6294 4766 3607 158 25 7 chrX 68076441 68077135 -108897005 + L1MA4 LINE L1 4054 4759 -1387 298 242 58 0 chrX 68077141 68077261 -108896879 - L1MB8 LINE L1 -3179 2967 2841 350 253 0 0 chrX 68077261 68077336 -108896804 + FRAM SINE Alu 69 143 -23 321 26 0 0 chrX 68077336 68077374 -108896766 + (CA)n Simple_repeat Simple_repeat 1 38 0 1528 285 41 12 chrX 68077496 68078155 -108895985 + L1M4 LINE L1 4670 5347 -799 33 25 0 0 chrX 68078188 68078228 -108895912 + AT_rich Low_complexity Low_complexity 1 40 0 247 200 57 14 chrX 68078228 68078298 -108895842 - MIR SINE MIR -93 169 97 212 192 39 39 chrX 68079484 68079536 -108894604 + L2 LINE L2 3262 3313 0 374 306 210 18 chrX 68080524 68080805 -108893335 + LTR16B LTR ERVL 115 449 -15 269 274 217 19 chrX 68081244 68081350 -108892790 + MIR SINE MIR 16 142 -66 1790 258 40 54 chrX 68083737 68084566 -108889574 - L1M4 LINE L1 -778 5368 4552 12410 194 28 4 chrX 68084577 68087835 -108886305 - L1M1 LINE L1 -496 7227 3902 13269 111 7 1 chrX 68087835 68090591 -108883549 + L1PA8 LINE L1 3369 6139 -33 312 244 0 0 chrX 68090591 68090677 -108883463 + (TA)n Simple_repeat Simple_repeat 2 87 0 11512 179 50 2 chrX 68090692 68092769 -108881371 - L1M1 LINE L1 -4674 2891 716 285 275 0 0 chrX 68093116 68093207 -108880933 - MER113 DNA MER1_type? -430 91 1 229 122 24 0 chrX 68094281 68094322 -108879818 + MIR SINE MIR 74 115 -147 312 299 239 6 chrX 68094700 68094867 -108879273 + MIR SINE MIR 2 207 -55 377 234 43 14 chrX 68095722 68095863 -108878277 + L1ME4a LINE L1 5966 6110 -11 647 131 0 10 chrX 68096247 68096346 -108877794 + MER4A LTR ERV1 1 98 -566 1868 123 9 22 chrX 68096346 68096696 -108877444 + MER4A LTR ERV1 261 664 0 397 408 13 13 chrX 68096771 68097004 -108877136 + MIR SINE MIR 28 260 -2 2164 227 31 13 chrX 68097073 68097682 -108876458 + MER67C LTR ERV1 1 692 -18 1362 116 74 9 chrX 68097732 68097948 -108876192 - MER30 DNA MER1_type 0 230 1 2042 253 36 24 chrX 68098083 68098774 -108875366 + LTR27 LTR ERV1 3 636 0 354 284 84 65 chrX 68099439 68099470 -108874670 - L1MC4 LINE L1 -396 7646 7617 2363 110 0 0 chrX 68099470 68099780 -108874360 - AluSg SINE Alu 0 310 1 354 284 84 65 chrX 68099780 68100104 -108874036 - L1MC4 LINE L1 -425 7617 7284 275 301 59 29 chrX 68100104 68100240 -108873900 - MER5B DNA MER1_type -37 141 2 287 349 26 26 chrX 68100275 68100427 -108873713 + MIR SINE MIR 50 201 -61 21 0 0 0 chrX 68100451 68100472 -108873668 + AT_rich Low_complexity Low_complexity 1 21 0 425 321 60 46 chrX 68101474 68101776 -108872364 + L2 LINE L2 3008 3313 0 30 69 0 0 chrX 68101786 68101844 -108872296 + AT_rich Low_complexity Low_complexity 1 58 0 246 364 23 0 chrX 68102011 68102099 -108872041 - MIR SINE MIR -79 129 40 1038 244 16 4 chrX 68102561 68102803 -108871337 + L1MDa LINE L1 18 262 -6278 894 227 82 26 chrX 68102808 68102994 -108871146 - L1MDa LINE L1 -4661 1879 1672 1165 273 11 24 chrX 68102994 68103364 -108870776 + MLT1A1 LTR MaLR 1 365 0 894 227 82 26 chrX 68103364 68103446 -108870694 - L1MDa LINE L1 -4868 1672 1596 559 211 58 0 chrX 68103537 68103708 -108870432 + L1MDa LINE L1 2380 2560 -3980 207 342 0 66 chrX 68104954 68105030 -108869110 + MIR SINE MIR 12 82 -180 201 74 0 0 chrX 68105034 68105061 -108869079 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 760 143 8 15 chrX 68105121 68105254 -108868886 + AluJb SINE Alu 3 134 -178 252 278 14 14 chrX 68105282 68105354 -108868786 + MIR SINE MIR 174 245 -17 23 0 0 0 chrX 68105465 68105488 -108868652 + AT_rich Low_complexity Low_complexity 1 23 0 243 181 34 34 chrX 68105495 68105672 -108868468 + (TA)n Simple_repeat Simple_repeat 2 178 0 379 258 103 86 chrX 68107745 68108036 -108866104 - L1ME4a LINE L1 0 6121 5826 312 309 16 0 chrX 68108074 68108197 -108865943 - L1ME4a LINE L1 -403 5718 5594 2400 215 42 10 chrX 68108250 68108749 -108865391 + L1MA4A LINE L1 10 528 -6321 2622 108 8 0 chrX 68108749 68109121 -108865019 - THE1C LTR MaLR 0 375 1 9024 148 2 69 chrX 68109121 68110277 -108863863 - THE1C-int LTR MaLR 0 1580 570 2157 122 3 0 chrX 68110277 68110580 -108863560 - AluSx SINE Alu -8 304 1 9024 148 2 69 chrX 68110580 68111115 -108863025 - THE1C-int LTR MaLR -1010 570 1 2160 156 13 5 chrX 68111115 68111487 -108862653 - THE1C LTR MaLR 0 375 1 10500 238 19 12 chrX 68111487 68114310 -108859830 + L1MA4A LINE L1 522 3366 -3482 8205 188 74 10 chrX 68114313 68117393 -108856747 + L1MA4A LINE L1 3709 6999 -6 28 29 0 0 chrX 68117576 68117611 -108856529 + AT_rich Low_complexity Low_complexity 1 35 0 6041 42 1 0 chrX 68117710 68118456 -108855684 - L1PA4 LINE L1 -1236 4910 4164 7359 36 2 1 chrX 68118456 68119688 -108854452 + L1PA4 LINE L1 4922 6154 -1 819 214 62 142 chrX 68120251 68120421 -108853719 - MLT1A2 LTR MaLR 0 374 192 534 194 0 9 chrX 68120421 68120702 -108853438 + L1PA4 LINE L1 6036 6315 0 819 214 62 142 chrX 68120702 68120929 -108853211 - MLT1A2 LTR MaLR -182 192 6 194 243 168 19 chrX 68120994 68121101 -108853039 - MIR SINE MIR -62 200 78 248 93 23 0 chrX 68121278 68121321 -108852819 + L1MA8 LINE L1 6223 6266 -25 373 293 172 9 chrX 68121419 68121634 -108852506 - L1MC4a LINE L1 -1818 5990 5741 1086 121 0 0 chrX 68121639 68121788 -108852352 + AluSg/x SINE Alu 138 286 -26 22 0 0 0 chrX 68121788 68121810 -108852330 + AT_rich Low_complexity Low_complexity 1 22 0 1737 213 39 37 chrX 68122220 68122628 -108851512 - LTR2 LTR ERV1 0 449 41 2555 210 48 12 chrX 68122716 68123315 -108850825 - L1MD2 LINE L1 -59 6300 5680 2011 161 13 0 chrX 68123370 68123680 -108850460 + HERVL18 LTR ERVL 4787 5100 -947 * 13870 151 28 7 chrX 68123678 68125840 -108848300 - HERVL18 LTR ERVL -1290 4757 2549 2424 99 68 0 chrX 68125840 68126193 -108847947 - MER51B LTR ERV1 0 377 1 9851 149 60 41 chrX 68126198 68128378 -108845762 - MER51B-int LTR ERV1 -3 7813 5410 3683 129 17 18 chrX 68128375 68129400 -108844740 - MER51B-int LTR ERV1 -2570 2647 1482 * 8347 109 74 5 chrX 68129381 68130816 -108843324 - MER51B-int LTR ERV1 -4489 3327 1794 666 188 26 78 chrX 68130820 68130974 -108843166 - MER4A LTR ERV1 -147 517 372 245 208 0 0 chrX 68131016 68131064 -108843076 - MER4A LTR ERV1 -566 98 51 3747 165 31 23 chrX 68131080 68132485 -108841655 - MER51B-int LTR ERV1 -6321 1495 1 2222 114 61 14 chrX 68132485 68132845 -108841295 - MER51B LTR ERV1 0 377 1 14352 153 8 6 chrX 68132845 68135318 -108838822 - HERVL18 LTR ERVL -3495 2552 7 1317 249 84 15 chrX 68135330 68135664 -108838476 - LTR18A LTR ERVL 0 357 1 4100 163 40 4 chrX 68135665 68136666 -108837474 + L1M1 LINE L1 2868 3903 -3662 1353 277 52 66 chrX 68136714 68137572 -108836568 + Charlie7 DNA MER1_type 60 905 -1707 4310 201 52 11 chrX 68137601 68138595 -108835545 - L1MA4A LINE L1 -5 7000 5966 * 7257 228 77 86 chrX 68138587 68138677 -108835463 - L1MA4A LINE L1 -2285 4563 4474 1819 164 156 8 chrX 68138677 68139050 -108835090 - MSTA LTR MaLR 0 428 1 7942 202 43 3 chrX 68139050 68140638 -108833502 - MSTA-int LTR MaLR 0 1651 1 1880 174 129 5 chrX 68140640 68141019 -108833121 - MSTA LTR MaLR -2 426 1 7257 228 77 86 chrX 68141019 68145511 -108828629 - L1MA4A LINE L1 -2374 4474 13 241 200 0 17 chrX 68145556 68145616 -108828524 + Charlie7 DNA MER1_type 2398 2456 -156 303 263 59 42 chrX 68145736 68145854 -108828286 + L1M4b LINE L1 30 149 -6710 1169 341 9 20 chrX 68146264 68146721 -108827419 - L1M3a LINE L1 -5503 452 1 275 286 50 25 chrX 68146806 68146925 -108827215 + MIR3 SINE MIR 87 208 0 1013 199 21 25 chrX 68148982 68149223 -108824917 - L1 LINE L1 -1812 4334 4095 27409 131 56 16 chrX 68150031 68154792 -108819348 + L1P LINE L1 2 4953 -1193 292 141 127 0 chrX 68254844 68254915 -108719225 - L1M4 LINE L1 -1909 4237 4158 431 322 6 6 chrX 68254931 68255111 -108719029 - MLT1-int LTR MaLR -794 577 398 202 328 0 16 chrX 68256644 68256705 -108717435 - L2 LINE L2 0 3313 3254 384 356 86 43 chrX 68256850 68257221 -108716919 - L2 LINE L2 -4 3309 2923 454 399 26 11 chrX 68257250 68257521 -108716619 - L2 LINE L2 -517 2797 2523 300 332 7 67 chrX 68257519 68257698 -108716442 - MIR SINE MIR -63 145 20 * 273 253 24 12 chrX 68257861 68257944 -108716196 + MIR SINE MIR 53 136 -126 297 301 130 72 chrX 68258248 68258524 -108715616 + MLT1J LTR MaLR 16 307 -204 2306 154 15 7 chrX 68258746 68259149 -108714991 - L1P3 LINE L1 -5751 710 305 5446 222 42 37 chrX 68259323 68261022 -108713118 - L1 LINE L1 -2179 5029 3314 1267 231 3 37 chrX 68261022 68261321 -108712819 - AluJo SINE Alu -23 289 1 5446 222 42 37 chrX 68261321 68261813 -108712327 - L1 LINE L1 -3894 3314 2826 1656 200 77 4 chrX 68261817 68262297 -108711843 - L1 LINE L1 -4723 2486 1972 1082 171 0 20 chrX 68262326 68262525 -108711615 - AluSc SINE Alu -3 306 112 1942 312 25 12 chrX 68262692 68263358 -108710782 - L1 LINE L1 -5306 1903 1229 273 299 79 0 chrX 68263361 68263488 -108710652 - L1M4 LINE L1 -3114 3032 2896 3036 238 29 44 chrX 68263503 68264252 -108709888 - L1MB4 LINE L1 0 6416 5680 1654 151 85 0 chrX 68264252 68264523 -108709617 + AluSx SINE Alu 5 298 -14 3036 238 29 44 chrX 68264523 68264720 -108709420 - L1MB4 LINE L1 -736 5680 5482 1776 89 8 0 chrX 68264720 68264955 -108709185 + MER11B LTR ERVK 1 237 -999 4934 29 2 0 chrX 68264999 68265582 -108708558 - L1PA4 LINE L1 -3 6152 5569 2367 33 0 7 chrX 68265567 68265867 -108708273 + L1PA4 LINE L1 5268 5565 -590 4196 162 26 38 chrX 68265867 68266727 -108707413 + MER11C LTR ERVK 223 1071 0 746 279 44 3 chrX 68266727 68267042 -108707098 - L1MB4 LINE L1 -895 5487 5160 11774 197 51 10 chrX 68267091 68271249 -108702891 - L1MA2 LINE L1 -3 7720 3373 * 15280 198 39 9 chrX 68271246 68271895 -108702245 - L1MA2 LINE L1 -4442 3123 2495 201 39 0 0 chrX 68271895 68271921 -108702219 + (TTG)n Simple_repeat Simple_repeat 2 27 0 15280 198 39 9 chrX 68271921 68274301 -108699839 - L1MA2 LINE L1 -5070 2495 1 5405 287 66 20 chrX 68274305 68277882 -108696258 - L1MB4 LINE L1 -1244 5138 1353 890 29 0 0 chrX 68277882 68277986 -108696154 - L1PA3 LINE L1 -3 6152 6049 5405 287 66 20 chrX 68277986 68278362 -108695778 - L1MB4 LINE L1 -5029 1353 996 905 259 92 59 chrX 68278355 68278879 -108695261 - L1M4c LINE L1 -4734 1912 1372 * 230 300 0 0 chrX 68279026 68279116 -108695024 - L1M4c LINE L1 -5346 1196 1107 2107 131 3 0 chrX 68279330 68279627 -108694513 - AluY SINE Alu -11 300 3 1072 161 24 0 chrX 68279633 68279838 -108694302 - L1MA6 LINE L1 0 6300 6091 527 223 14 14 chrX 68279838 68279977 -108694163 - L1MA6 LINE L1 -703 5597 5459 997 239 53 122 chrX 68279985 68280517 -108693623 + LTR9 LTR ERV1 118 612 0 1853 255 59 13 chrX 68280517 68281043 -108693097 + HUERS-P3 LTR ERV1 1 550 -8369 28967 161 19 12 chrX 68281205 68286229 -108687911 + HUERS-P3 LTR ERV1 2397 7412 -6 1325 235 42 90 chrX 68286230 68286873 -108687267 + LTR9 LTR ERV1 1 612 0 1623 270 43 24 chrX 68286902 68287480 -108686660 - L1M4c LINE L1 -5603 939 351 661 252 58 69 chrX 68287723 68287869 -108686271 - L1MDb LINE L1 -5184 1225 1079 2406 66 0 3 chrX 68287869 68288172 -108685968 - AluY SINE Alu -9 302 1 661 252 58 69 chrX 68288172 68288474 -108685666 - L1MDb LINE L1 -5330 1079 782 842 124 38 18 chrX 68290128 68290146 -108683994 + CT-rich Low_complexity Low_complexity 1 17 -274 246 32 0 0 chrX 68290146 68290177 -108683963 + (CA)n Simple_repeat Simple_repeat 1 31 0 842 124 38 18 chrX 68290177 68290414 -108683726 + CT-rich Low_complexity Low_complexity 17 291 0 1938 47 18 14 chrX 68290958 68291233 -108682907 - L1PA4 LINE L1 -5 6150 5875 3864 165 10 1 chrX 68291608 68292299 -108681841 - L1PA13 LINE L1 -4 6159 5463 5565 46 0 0 chrX 68292517 68293196 -108680944 - L1PA4 LINE L1 -3 6152 5474 302 199 18 0 chrX 68294106 68294182 -108679958 + L1PA15 LINE L1 4246 4324 -1822 1077 232 0 0 chrX 68294252 68294472 -108679668 + MER58A DNA MER1_type 5 224 0 201 129 0 0 chrX 68295370 68295401 -108678739 + (TTG)n Simple_repeat Simple_repeat 3 33 0 4825 165 36 3 chrX 68295751 68296724 -108677416 + L1PA15 LINE L1 5158 6162 -3 2204 117 3 0 chrX 68296776 68297085 -108677055 + AluSx SINE Alu 1 310 -2 28 0 0 0 chrX 68297086 68297114 -108677026 + AT_rich Low_complexity Low_complexity 1 28 0 2571 65 3 3 chrX 68297455 68297810 -108676330 - L1P LINE L1 -2618 3528 3174 10267 52 5 0 chrX 68297812 68299878 -108674262 - L1PA5 LINE L1 -1 6153 4082 9627 221 36 3 chrX 68299893 68302672 -108671468 + L1PA3 LINE L1 3154 6030 -125 35 0 0 0 chrX 68302690 68302725 -108671415 + AT_rich Low_complexity Low_complexity 1 35 0 760 132 0 0 chrX 68302732 68302846 -108671294 + L1PA13 LINE L1 6045 6158 -5 200 237 41 31 chrX 68303155 68303252 -108670888 + (TAAA)n Simple_repeat Simple_repeat 2 99 0 2221 125 34 3 chrX 68303766 68304119 -108670021 + THE1B LTR MaLR 1 364 0 384 330 55 10 chrX 68304622 68304973 -108669167 - MLT1J2 LTR MaLR -63 387 3 283 261 31 69 chrX 68306365 68306495 -108667645 - MARNA DNA Mariner -134 452 328 529 218 122 51 chrX 68306669 68306825 -108667315 - MER5B DNA MER1_type -1 177 11 690 316 37 16 chrX 68306975 68307219 -108666921 - MIR SINE MIR -13 249 1 277 322 167 17 chrX 68307838 68308018 -108666122 + MLT1I LTR MaLR 11 217 -192 361 333 35 6 chrX 68308286 68308460 -108665680 - MARNA DNA Mariner -390 196 18 296 313 23 15 chrX 68308864 68308995 -108665145 + L1ME4a LINE L1 5569 5700 -421 5132 171 3 14 chrX 68309013 68309909 -108664231 + MSTA-int LTR MaLR 695 1580 0 1914 156 153 5 chrX 68309909 68310282 -108663858 + MSTA LTR MaLR 1 428 0 53 73 0 0 chrX 68310299 68310408 -108663732 + AT_rich Low_complexity Low_complexity 1 109 0 331 233 86 31 chrX 68310469 68310632 -108663508 + L1ME4a LINE L1 5950 6121 0 212 238 0 25 chrX 68310931 68311011 -108663129 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 25 0 0 0 chrX 68311104 68311129 -108663011 + AT_rich Low_complexity Low_complexity 1 25 0 4131 191 22 56 chrX 68311281 68311514 -108662626 - L1MA4A LINE L1 -5 6298 6059 2199 104 0 0 chrX 68311514 68311803 -108662337 - AluSc SINE Alu -20 289 1 4131 191 22 56 chrX 68311803 68312556 -108661584 - L1MA4A LINE L1 -244 6059 5345 8318 203 51 8 chrX 68313529 68316208 -108657932 - L1PA15 LINE L1 -189 6627 3829 3262 251 15 37 chrX 68316212 68317274 -108656866 - L1PA15 LINE L1 -3374 3423 2385 1665 178 46 38 chrX 68317283 68317653 -108656487 - THE1C LTR MaLR 0 375 3 2890 142 15 15 chrX 68317655 68318126 -108656014 - THE1C-int LTR MaLR 0 1580 1110 4232 248 33 7 chrX 68318165 68319245 -108654895 - L1PA15 LINE L1 -4510 2277 1170 261 333 70 0 chrX 68319281 68319410 -108654730 - L1PA15 LINE L1 -5529 1258 1121 3088 238 49 20 chrX 68320636 68321964 -108652176 + L1MB4 LINE L1 4807 6180 0 22 0 0 0 chrX 68322263 68322285 -108651855 + AT_rich Low_complexity Low_complexity 1 22 0 422 323 139 17 chrX 68322552 68322846 -108651294 + L2 LINE L2 2981 3310 -3 2090 119 3 32 chrX 68323295 68323605 -108650535 + AluSx SINE Alu 1 301 -11 21 0 0 0 chrX 68324841 68324862 -108649278 + AT_rich Low_complexity Low_complexity 1 21 0 468 280 27 20 chrX 68326048 68326198 -108647942 + MIR SINE MIR 53 203 -59 724 211 75 0 chrX 68326283 68326443 -108647697 - MER3 DNA MER1_type -1 208 37 1807 257 84 7 chrX 68326443 68327012 -108647128 - LTR48B LTR ERV1 0 644 32 2225 199 30 4 chrX 68327013 68327480 -108646660 + L1PB2 LINE L1 3711 4189 -1957 545 71 50 10 chrX 68327481 68327580 -108646560 + GA-rich Low_complexity Low_complexity 3 105 0 4785 193 54 14 chrX 68327580 68328524 -108645616 + L1PB2 LINE L1 4152 5057 -1094 188 33 0 33 chrX 68328524 68328554 -108645586 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4785 193 54 14 chrX 68328554 68329520 -108644620 + L1PB2 LINE L1 5057 6144 -7 36 40 0 0 chrX 68329520 68329570 -108644570 + AT_rich Low_complexity Low_complexity 1 50 0 1080 138 6 17 chrX 68329576 68329824 -108644316 - L1PBa LINE L1 -3891 2971 2669 8245 187 39 6 chrX 68329827 68330254 -108643886 - L1PBa LINE L1 -4318 2545 2134 222 37 0 0 chrX 68330254 68330281 -108643859 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 8245 187 39 6 chrX 68330281 68333227 -108640913 - L1PBa LINE L1 -4729 2134 1 537 249 35 53 chrX 68333279 68333448 -108640692 - L1MA7 LINE L1 -161 6130 5965 1701 171 24 0 chrX 68333687 68333974 -108640166 + AluSx SINE Alu 4 297 -15 2268 213 21 37 chrX 68334081 68334170 -108639970 - L1MB4 LINE L1 0 6882 6793 1846 157 20 0 chrX 68334170 68334469 -108639671 + AluSx SINE Alu 3 307 -5 2268 213 21 37 chrX 68334469 68334998 -108639142 - L1MB4 LINE L1 -89 6793 6274 * 4196 233 149 22 chrX 68334992 68337714 -108636426 - L1MB4 LINE L1 -1990 4858 1778 7033 23 0 0 chrX 68337715 68338530 -108635610 - L1PA3 LINE L1 -3 6152 5338 813 37 0 0 chrX 68338529 68338636 -108635504 + L1PA3 LINE L1 5236 5342 -804 * 2723 266 50 37 chrX 68338633 68339888 -108634252 - L1MB4 LINE L1 -5059 1790 382 291 250 0 83 chrX 68339882 68340002 -108634138 - L1M4c LINE L1 -3904 2480 2371 * 11397 212 31 14 chrX 68340001 68342308 -108631832 + L1M1 LINE L1 16 2360 -5205 * 21447 127 14 7 chrX 68342306 68346614 -108627526 - L1PA8A LINE L1 -1 6130 1798 264 279 0 0 chrX 68346612 68346673 -108627467 - L1 LINE L1 -3462 2684 2624 * 3593 67 28 10 chrX 68346687 68347180 -108626960 + L1PA7 LINE L1 5649 6150 -4 1542 238 47 0 chrX 68347188 68347570 -108626570 - L1PA15-16 LINE L1 -5073 1776 1377 3839 222 15 0 chrX 68347613 68348337 -108625803 + L1PA15 LINE L1 13 747 -6102 309 288 62 40 chrX 68348398 68348680 -108625460 + L1MDb LINE L1 894 1187 -5222 1611 227 0 0 chrX 68348680 68348988 -108625152 + AluJb SINE Alu 3 310 -2 309 288 62 40 chrX 68348988 68349076 -108625064 + L1MDb LINE L1 1187 1272 -5137 * 518 298 71 33 chrX 68349059 68349694 -108624446 + L1MDb LINE L1 3208 3866 -2540 * 5448 227 41 12 chrX 68349675 68350344 -108623796 + L1PA15 LINE L1 4432 5080 -1788 324 0 0 0 chrX 68350344 68350380 -108623760 + (CA)n Simple_repeat Simple_repeat 1 36 0 5448 227 41 12 chrX 68350380 68351361 -108622779 + L1PA15 LINE L1 5080 6132 -736 2436 83 3 3 chrX 68351361 68351674 -108622466 + AluSp SINE Alu 1 313 0 3678 180 10 29 chrX 68351693 68351960 -108622180 + L1PA15 LINE L1 6116 6386 -482 2102 158 83 13 chrX 68351960 68352358 -108621782 + MSTA LTR MaLR 3 428 0 3678 180 10 29 chrX 68352358 68352857 -108621283 + L1PA15 LINE L1 6386 6868 0 547 278 23 17 chrX 68354687 68354863 -108619277 - MIR SINE MIR -18 244 68 1993 232 43 46 chrX 68354892 68355478 -108618662 + MER92B LTR ERV1 1 584 -52 235 188 78 0 chrX 68355479 68355543 -108618597 + MER92A LTR ERV1 342 410 -2 24 77 0 0 chrX 68357616 68357668 -108616472 + AT_rich Low_complexity Low_complexity 1 52 0 255 364 42 18 chrX 68357775 68357940 -108616200 + MER5B DNA MER1_type 7 175 -3 584 105 0 11 chrX 68358064 68358159 -108615981 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 3955 161 21 3 chrX 68358162 68358866 -108615274 - L1PA16 LINE L1 -4 6162 5446 1407 162 5 5 chrX 68358866 68359088 -108615052 - AluSx SINE Alu -90 222 1 276 100 0 0 chrX 68359225 68359262 -108614878 - MLT2D LTR ERVL -2 412 376 6870 187 108 90 chrX 68359262 68360986 -108613154 - MER52A LTR ERV1 0 1755 1 1519 163 0 8 chrX 68360986 68361237 -108612903 - MER52A-int LTR ERV1 0 7091 6843 * 26629 121 13 15 chrX 68361233 68365114 -108609026 - MER52A-int LTR ERV1 -359 6732 2857 281 301 29 19 chrX 68365114 68365217 -108608923 + MLT1L LTR MaLR 453 556 -59 1077 240 65 74 chrX 68365384 68365846 -108608294 - MLT1C LTR MaLR -4 463 6 241 312 5 134 chrX 68365866 68366068 -108608072 + MIR3 SINE MIR 32 207 -1 1941 232 21 0 chrX 68366290 68366725 -108607415 - L1MB2 LINE L1 -17 6154 5711 2252 203 10 27 chrX 68366730 68367098 -108607042 - MER31A LTR ERV1 -10 475 115 998 247 68 31 chrX 68367098 68367450 -108606690 + MLT1A1 LTR MaLR 1 365 0 2252 203 10 27 chrX 68367450 68367564 -108606576 - MER31A LTR ERV1 -370 115 1 1079 211 26 37 chrX 68367565 68367835 -108606305 - MER31A-int LTR ERV1 -22 4914 4648 3068 269 8 20 chrX 68367836 68368582 -108605558 + L1PA15 LINE L1 2 738 -6049 14265 220 21 27 chrX 68368592 68369161 -108604979 + L1PA15 LINE L1 1455 2026 -4790 455 123 41 0 chrX 68369161 68369234 -108604906 + MADE1 DNA Mariner 1 76 -4 14265 220 21 27 chrX 68369234 68371098 -108603042 + L1PA15 LINE L1 2026 3900 -2916 3427 82 2 0 chrX 68371098 68371560 -108602580 + L1PA8 LINE L1 5708 6170 -2 14265 220 21 27 chrX 68371560 68374490 -108599650 + L1PA15 LINE L1 3900 6815 -1 5433 211 52 31 chrX 68374649 68376048 -108598092 - MER31A-int LTR ERV1 -405 4531 3104 433 221 33 25 chrX 68376049 68376171 -108597969 - MER31A-int LTR ERV1 -2178 3768 3646 653 209 98 87 chrX 68376201 68376805 -108597335 - MER31A-int LTR ERV1 -2603 2333 1702 1251 233 46 61 chrX 68376841 68377408 -108596732 - MER31A-int LTR ERV1 -3269 1667 963 492 189 0 11 chrX 68377413 68377508 -108596632 - MER31A-int LTR ERV1 -3687 1249 1156 548 325 61 41 chrX 68377546 68377792 -108596348 - MER31A-int LTR ERV1 -4133 803 553 1149 230 41 91 chrX 68377793 68378211 -108595929 - MER31A-int LTR ERV1 -4505 431 35 2182 195 16 12 chrX 68378217 68378642 -108595498 - MER31A LTR ERV1 -8 477 51 4379 243 31 32 chrX 68378665 68380448 -108593692 - L1M3 LINE L1 -452 5955 4176 1342 264 56 42 chrX 68380465 68381291 -108592849 - L1M3 LINE L1 -4516 1797 805 22 0 0 0 chrX 68382136 68382158 -108591982 + AT_rich Low_complexity Low_complexity 1 22 0 2560 268 45 19 chrX 68382163 68383198 -108590942 - L1ME1 LINE L1 -20 6146 5089 1967 285 73 26 chrX 68383237 68384301 -108589839 - L1ME1 LINE L1 -1197 4949 3836 889 198 27 40 chrX 68384302 68384524 -108589616 - L1MC1 LINE L1 -5 6328 6110 1160 213 42 97 chrX 68384532 68384936 -108589204 - MLT1B LTR MaLR -8 382 1 507 228 26 98 chrX 68384936 68385129 -108589011 - L1MC2 LINE L1 -226 6118 5940 1605 47 5 0 chrX 68385142 68385334 -108588806 + L1P3 LINE L1 5443 5635 -537 * 5518 89 11 0 chrX 68385323 68386190 -108587950 - L1P2 LINE L1 -679 5475 4603 476 219 31 8 chrX 68386224 68386352 -108587788 + L1M4 LINE L1 4479 4609 -1537 2109 252 27 27 chrX 68386425 68387176 -108586964 + L1M4 LINE L1 4589 5339 -807 354 198 36 30 chrX 68387195 68387362 -108586778 + (TTATA)n Simple_repeat Simple_repeat 2 169 0 271 126 46 11 chrX 68387374 68387461 -108586679 + (TA)n Simple_repeat Simple_repeat 1 90 0 1032 150 69 13 chrX 68387461 68387694 -108586446 + L1MCa LINE L1 1702 1947 -4479 285 94 87 13 chrX 68387705 68387854 -108586286 + (TA)n Simple_repeat Simple_repeat 1 160 0 2013 187 38 30 chrX 68387869 68388398 -108585742 - L1MCa LINE L1 -4821 1605 1073 626 193 0 8 chrX 68388390 68388509 -108585631 - L1MCa LINE L1 -5844 582 465 * 595 203 28 42 chrX 68388514 68388538 -108585602 - L1PA15 LINE L1 -174 6642 6619 7585 24 0 0 chrX 68388538 68389676 -108584464 - L1PA4 LINE L1 -3 6152 5016 595 203 28 42 chrX 68389676 68389794 -108584346 - L1PA15 LINE L1 -197 6619 6502 * 6958 256 35 11 chrX 68389793 68391902 -108582238 - L1PA15 LINE L1 -1464 5333 3174 3775 231 45 11 chrX 68391904 68392651 -108581489 - L1PA15 LINE L1 -4149 2648 1839 405 0 0 0 chrX 68392651 68392696 -108581444 + (TA)n Simple_repeat Simple_repeat 1 45 0 3775 231 45 11 chrX 68392696 68393278 -108580862 - L1PA15 LINE L1 -4958 1839 1278 276 266 110 35 chrX 68393970 68394252 -108579888 - L1MDa LINE L1 -4048 2492 2190 1380 266 0 0 chrX 68394270 68394537 -108579603 + Tigger7 DNA MER2_type 1 267 -466 541 208 0 20 chrX 68394535 68394636 -108579504 + Tigger7 DNA MER2_type 2389 2487 0 * 582 256 60 43 chrX 68394643 68394924 -108579216 - L1MDa LINE L1 -4385 2155 1870 917 279 8 20 chrX 68394948 68395202 -108578938 + L1M3c LINE L1 2 252 -5889 3122 283 56 64 chrX 68395205 68396509 -108577631 + L1M3c LINE L1 166 1214 -4927 1793 42 5 0 chrX 68396509 68396726 -108577414 + AluY SINE Alu 88 305 -6 3122 283 56 64 chrX 68396726 68397108 -108577032 + L1M3c LINE L1 1214 1598 -4543 393 293 13 51 chrX 68397118 68397275 -108576865 - L1M3b LINE L1 -6130 151 1 2183 209 17 10 chrX 68397275 68397830 -108576310 - L1M4 LINE L1 -426 5758 5201 2133 212 0 0 chrX 68398613 68399102 -108575038 + L1PA12 LINE L1 2354 2835 -4739 * 5585 229 47 6 chrX 68399098 68400149 -108573991 - L1PA15-16 LINE L1 -5616 1233 229 2006 218 9 19 chrX 68400149 68400581 -108573559 - MSTA LTR MaLR 0 428 1 5585 229 47 6 chrX 68400581 68400820 -108573320 - L1PA15-16 LINE L1 -6620 229 1 349 358 73 0 chrX 68401186 68401337 -108572803 - MIR3 SINE MIR -9 199 38 2460 117 5 3 chrX 68401387 68401756 -108572384 - L1PB1 LINE L1 0 6151 5782 261 134 30 15 chrX 68401756 68401823 -108572317 + (TA)n Simple_repeat Simple_repeat 1 68 0 3059 177 37 13 chrX 68401846 68401910 -108572230 - L1PB1 LINE L1 -359 5792 5731 2178 56 0 4 chrX 68401910 68402176 -108571964 - AluY SINE Alu -9 302 38 3059 177 37 13 chrX 68402176 68403061 -108571079 - L1PB1 LINE L1 -420 5731 4827 1226 197 70 10 chrX 68403403 68403702 -108570438 - L1MA9 LINE L1 0 6312 5996 734 244 55 63 chrX 68403703 68404140 -108570000 - MLT1A1 LTR MaLR -2 363 1 2719 201 34 64 chrX 68404140 68404350 -108569790 - L1MA9 LINE L1 -312 6000 5785 2213 94 0 0 chrX 68404350 68404636 -108569504 - AluSg SINE Alu -24 286 1 2719 201 34 64 chrX 68404636 68405563 -108568577 - L1MA9 LINE L1 -527 5785 4898 6533 135 13 16 chrX 68405578 68406843 -108567297 + L1MA2 LINE L1 5042 6304 0 1003 206 19 38 chrX 68406857 68407267 -108566873 - L1M1 LINE L1 -743 6105 5829 239 200 0 43 chrX 68407262 68407332 -108566808 - L1PA16 LINE L1 -2 7602 7536 * 9197 250 55 29 chrX 68407333 68408523 -108565617 - L1PA16 LINE L1 -105 7499 6342 2925 174 89 24 chrX 68408523 68409205 -108564935 - LTR8A LTR ERV1 0 727 1 9197 250 55 29 chrX 68409205 68410372 -108563768 - L1PA16 LINE L1 -1262 6342 5207 443 62 16 0 chrX 68410372 68410436 -108563704 - MER41B LTR ERV1 -88 547 483 9197 250 55 29 chrX 68410436 68411121 -108563019 - L1PA16 LINE L1 -2397 5207 4542 1700 194 7 0 chrX 68411121 68411420 -108562720 - AluJb SINE Alu -11 301 1 9197 250 55 29 chrX 68411420 68413466 -108560674 - L1PA16 LINE L1 -3062 4542 2183 419 290 75 71 chrX 68413578 68414016 -108560124 - L1PA16 LINE L1 -5603 1978 1539 469 272 0 0 chrX 68414018 68414143 -108559997 - L1M1 LINE L1 -998 5850 5726 * 934 187 49 15 chrX 68414140 68414343 -108559797 - L1PA16 LINE L1 0 6166 5957 * 1752 239 15 57 chrX 68414311 68414815 -108559325 - L1M1 LINE L1 -1101 5747 5270 2041 152 112 25 chrX 68414815 68415209 -108558931 - MSTA LTR MaLR 0 428 1 1752 239 15 57 chrX 68415209 68415298 -108558842 - L1M1 LINE L1 -1578 5270 5179 713 144 173 0 chrX 68415302 68415441 -108558699 - MSTA LTR MaLR -265 163 1 4856 246 29 22 chrX 68415445 68417002 -108557138 - L1M1 LINE L1 -1585 5263 3696 1878 266 35 0 chrX 68417348 68417780 -108556360 - L1M1 LINE L1 -6378 471 25 * 4641 258 61 26 chrX 68417776 68420005 -108554135 - L1 LINE L1 -1911 4471 2161 4684 262 40 42 chrX 68420018 68424810 -108549330 + L1PB3 LINE L1 6 3898 -2964 251 163 0 0 chrX 68424810 68424853 -108549287 - MADE1 DNA Mariner -28 52 10 4684 262 40 42 chrX 68424853 68425442 -108548698 + L1PB3 LINE L1 3898 4487 -2375 * 5107 183 8 8 chrX 68425436 68426874 -108547266 + L1PB3 LINE L1 5432 6870 0 1394 283 81 25 chrX 68426965 68427090 -108547050 - L1 LINE L1 -4292 2090 1973 2286 100 3 0 chrX 68427090 68427390 -108546750 - AluSg SINE Alu -9 301 1 1394 283 81 25 chrX 68427390 68428153 -108545987 - L1 LINE L1 -4409 1973 1092 21 57 0 0 chrX 68428326 68428361 -108545779 + AT_rich Low_complexity Low_complexity 1 35 0 329 279 127 74 chrX 68429164 68429408 -108544732 - MER46C DNA MER2_type -81 257 1 23 33 0 0 chrX 68429528 68429558 -108544582 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 68429920 68429943 -108544197 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrX 68430318 68430360 -108543780 + AT_rich Low_complexity Low_complexity 1 42 0 541 268 81 87 chrX 68430605 68430856 -108543284 + L1MC2 LINE L1 16 217 -5828 2924 88 22 50 chrX 68430856 68431313 -108542827 + MLT2A1 LTR ERVL 1 444 0 541 268 81 87 chrX 68431313 68431371 -108542769 + L1MC2 LINE L1 217 274 -5771 1073 235 126 45 chrX 68431442 68431799 -108542341 - MSTD LTR MaLR 0 396 11 1471 212 69 62 chrX 68431820 68432225 -108541915 - MSTD-int LTR MaLR -5 1730 1323 4545 256 41 26 chrX 68432292 68433734 -108540406 + L1MC2 LINE L1 2333 3818 -2746 16772 28 0 0 chrX 68433734 68436490 -108537650 - L1PA2 LINE L1 0 6155 3402 4545 256 41 26 chrX 68436490 68437150 -108536990 + L1MC2 LINE L1 3818 4466 -2098 483 239 26 0 chrX 68437150 68437267 -108536873 - L1M4 LINE L1 -1991 4155 4036 4481 215 53 13 chrX 68437276 68438493 -108535647 + L1MC2 LINE L1 5485 6737 -25 727 297 18 6 chrX 68438521 68438858 -108535282 + L1M4 LINE L1 3034 3374 -2772 2916 197 36 53 chrX 68438890 68439668 -108534472 - L1MA9 LINE L1 -203 6109 5345 7011 117 3 0 chrX 68439729 68440702 -108533438 + L1PA5 LINE L1 8 983 -5478 13585 77 1 2 chrX 68440702 68443334 -108530806 + L1PA5 LINE L1 3833 6462 -7 1806 201 66 12 chrX 68443439 68443847 -108530293 - MSTB1 LTR MaLR -2 430 1 784 194 36 12 chrX 68443847 68444012 -108530128 - MSTB1-int LTR MaLR 0 1651 1483 1378 271 121 9 chrX 68444027 68444565 -108529575 - Charlie1a DNA MER1_type -852 603 6 476 258 179 0 chrX 68444579 68444730 -108529410 - MER5A DNA MER1_type -1 188 11 8117 206 14 1 chrX 68444760 68446253 -108527887 + ERVL LTR ERVL 1466 2978 -2786 425 122 0 40 chrX 68446253 68446327 -108527813 + MLT1A1 LTR MaLR 1 71 -294 574 162 32 45 chrX 68446354 68446508 -108527632 - L1MA8 LINE L1 0 6291 6140 2160 168 45 43 chrX 68446534 68447047 -108527093 - L1MA8 LINE L1 -28 6263 5750 7918 203 38 15 chrX 68447139 68448718 -108525422 + ERVL LTR ERVL 2975 4589 -1175 276 143 0 0 chrX 68448720 68448762 -108525378 + MLT2B2 LTR ERVL 474 515 0 4754 226 48 24 chrX 68448774 68448834 -108525306 + ERVL LTR ERVL 2585 2642 -3122 1777 192 27 55 chrX 68448834 68449235 -108524905 + MLT1B LTR MaLR 1 390 0 4754 226 48 24 chrX 68449235 68450261 -108523879 + ERVL LTR ERVL 2642 3697 -2067 1421 164 40 114 chrX 68450302 68450579 -108523561 + MLT2C1 LTR ERVL 1 244 -153 1261 196 80 18 chrX 68450579 68450854 -108523286 - AluJo SINE Alu -20 292 1 1421 164 40 114 chrX 68450854 68450953 -108523187 + MLT2C1 LTR ERVL 244 349 -48 259 106 0 64 chrX 68451251 68451298 -108522842 - MLT1J2 LTR MaLR -15 435 392 43586 45 3 2 chrX 68451314 68457453 -108516687 - L1PA3 LINE L1 -3 6152 7 289 289 114 9 chrX 68457601 68457715 -108516425 - MLT1J2 LTR MaLR -318 132 7 25 0 0 0 chrX 68458141 68458166 -108515974 + AT_rich Low_complexity Low_complexity 1 25 0 13073 110 8 8 chrX 68458365 68460386 -108513754 - L1PA7 LINE L1 -1561 4585 2565 6746 74 8 0 chrX 68460386 68461940 -108512200 + L1PA7 LINE L1 4597 6151 -3 197 284 15 15 chrX 68463386 68463453 -108510687 - MER5A DNA MER1_type -45 144 78 35 54 0 0 chrX 68463539 68463595 -108510545 + AT_rich Low_complexity Low_complexity 1 56 0 635 280 52 29 chrX 68463606 68463913 -108510227 - L1ME4a LINE L1 -85 6036 5723 2104 87 0 58 chrX 68463929 68464241 -108509899 - AluY SINE Alu -15 296 3 704 325 73 49 chrX 68465156 68465648 -108508492 - MLT1G1 LTR MaLR -5 590 87 32 0 0 0 chrX 68465682 68465714 -108508426 + AT_rich Low_complexity Low_complexity 1 32 0 340 314 7 7 chrX 68465983 68466123 -108508017 - MER103 DNA DNA -10 156 17 2154 92 0 7 chrX 68466434 68466715 -108507425 - AluY SINE Alu -21 290 12 246 279 0 0 chrX 68467143 68467204 -108506936 - LTR67 LTR ERVL -5 552 492 3416 224 20 8 chrX 68467703 68468490 -108505650 - L1MB7 LINE L1 0 6253 5455 7198 250 72 51 chrX 68468500 68470072 -108504068 - L1MB7 LINE L1 -820 5395 3857 2242 120 0 0 chrX 68470072 68470372 -108503768 + AluSg SINE Alu 1 300 -10 7198 250 72 51 chrX 68470372 68471142 -108502998 - L1MB7 LINE L1 -2358 3857 3105 951 50 22 39 chrX 68471142 68471323 -108502817 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 7198 250 72 51 chrX 68471323 68471354 -108502786 - L1MB7 LINE L1 -3110 3105 3076 1580 148 25 0 chrX 68471354 68471591 -108502549 - AluSq SINE Alu -70 243 1 7198 250 72 51 chrX 68471591 68472946 -108501194 - L1MB7 LINE L1 -3139 3076 1620 771 183 30 0 chrX 68472946 68473110 -108501030 - L1MB3 LINE L1 -12 6171 6003 243 61 0 0 chrX 68473458 68473491 -108500649 + (A)n Simple_repeat Simple_repeat 1 33 0 1060 316 34 23 chrX 68473682 68474153 -108499987 + MLT1J LTR MaLR 36 511 0 381 224 154 42 chrX 68474742 68474885 -108499255 + MER5B DNA MER1_type 20 178 0 245 278 155 10 chrX 68474960 68475057 -108499083 - MIR3 SINE MIR -48 160 50 188 239 87 0 chrX 68475239 68475285 -108498855 + L2 LINE L2 3223 3272 0 28 29 0 0 chrX 68476626 68476661 -108497479 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 68477022 68477043 -108497097 + AT_rich Low_complexity Low_complexity 1 21 0 2395 116 3 47 chrX 68477053 68477434 -108496706 + THE1B LTR MaLR 1 364 0 535 232 52 7 chrX 68477901 68478056 -108496084 + MER103 DNA DNA 3 164 -2 457 237 30 59 chrX 68478170 68478305 -108495835 + L2 LINE L2 3177 3307 -6 252 59 0 0 chrX 68478305 68478339 -108495801 + (CATA)n Simple_repeat Simple_repeat 2 35 0 481 303 144 10 chrX 68478546 68478754 -108495386 - MIR SINE MIR -16 246 11 310 175 25 0 chrX 68479396 68479476 -108494664 + (TA)n Simple_repeat Simple_repeat 2 83 0 2452 63 0 0 chrX 68480295 68480598 -108493542 - AluY SINE Alu -8 303 1 1515 206 52 38 chrX 68481224 68481666 -108492474 + L1MA4A LINE L1 2755 3206 -2940 2045 132 0 0 chrX 68481666 68481955 -108492185 - AluSx SINE Alu -21 291 3 1515 206 52 38 chrX 68481955 68482017 -108492123 + L1MA4A LINE L1 3206 3266 -2880 51 0 0 0 chrX 68482027 68482078 -108492062 + AT_rich Low_complexity Low_complexity 1 51 0 7735 189 19 32 chrX 68482078 68484286 -108489854 + L1MA4A LINE L1 3535 5708 -595 2525 118 6 3 chrX 68484286 68484649 -108489491 + THE1B LTR MaLR 1 364 0 7735 189 19 32 chrX 68484649 68485232 -108488908 + L1MA4A LINE L1 5708 6297 -6 806 158 8 8 chrX 68485358 68485491 -108488649 + LTR29 LTR ERV1 490 622 0 1370 202 37 36 chrX 68485507 68485936 -108488204 + LTR29-int LTR ERV1 19 2555 -4798 216 0 0 0 chrX 68485973 68485997 -108488143 + (A)n Simple_repeat Simple_repeat 1 24 0 960 191 21 47 chrX 68485999 68486234 -108487906 + LTR49-int LTR ERV1 355 583 -5748 707 164 121 16 chrX 68486235 68486518 -108487622 + LTR49-int LTR ERV1 768 1114 -5217 604 207 80 2 chrX 68486540 68486777 -108487363 + LTR49-int LTR ERV1 1769 2077 -2803 * 1040 236 37 42 chrX 68486762 68487285 -108486855 + LTR49-int LTR ERV1 1584 2185 -4146 * 1201 178 11 94 chrX 68487273 68487560 -108486580 + LTR49-int LTR ERV1 3153 3415 -4122 1158 206 76 74 chrX 68487680 68488483 -108485657 + LTR49-int LTR ERV1 1390 3612 -2651 6621 161 69 35 chrX 68488554 68490033 -108484107 + LTR49-int LTR ERV1 4799 6327 -4 1301 205 96 10 chrX 68490033 68490356 -108483784 + LTR49 LTR ERV1 1 343 -252 984 156 18 0 chrX 68490327 68490494 -108483646 + LTR29 LTR ERV1 387 556 -66 * 1865 213 17 38 chrX 68490718 68491252 -108482888 - MER41B LTR ERV1 0 510 100 8393 199 7 9 chrX 68491285 68493242 -108480898 - MER41B-int LTR ERV1 -3 6673 4677 2302 155 59 5 chrX 68493244 68493650 -108480490 + MSTA LTR MaLR 1 428 0 8445 190 52 7 chrX 68493650 68495216 -108478924 + MSTA-int LTR MaLR 1 1637 -14 2352 143 36 17 chrX 68495239 68495651 -108478489 + MSTA LTR MaLR 9 428 0 1357 257 7 0 chrX 68496132 68496439 -108477701 + AluJo SINE Alu 1 309 -3 1135 179 14 40 chrX 68496728 68496951 -108477189 - ERVL LTR ERVL -4302 1462 1246 2070 127 66 17 chrX 68496964 68497311 -108476829 - THE1B LTR MaLR 0 364 1 8393 123 5 0 chrX 68497311 68498494 -108475646 - THE1B-int LTR MaLR 0 1580 392 34536 109 12 17 chrX 68498517 68504696 -108469444 - L1PA6 LINE L1 0 6154 11 2743 73 2 104 chrX 68504703 68505155 -108468985 - THE1B-int LTR MaLR -1174 406 1 2132 130 48 17 chrX 68505155 68505508 -108468632 - THE1B LTR MaLR 0 364 1 2687 235 39 37 chrX 68505520 68506549 -108467591 - ERVL LTR ERVL -4778 986 2 1426 263 119 15 chrX 68506550 68507021 -108467119 - MLT2B1 LTR ERVL 0 520 1 1189 195 10 0 chrX 68507021 68507226 -108466914 - ERVL-C1 LTR ERVL -3190 2574 2368 1919 272 41 22 chrX 68507237 68508448 -108465692 - ERVL-C1 LTR ERVL -4455 1309 3 210 125 16 62 chrX 68508500 68508564 -108465576 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 213 213 43 21 chrX 68508611 68508705 -108465435 + (TATAA)n Simple_repeat Simple_repeat 3 98 0 1761 194 6 3 chrX 68508724 68509049 -108465091 - MLT2C1 LTR ERVL -48 349 24 246 81 0 0 chrX 68509056 68509093 -108465047 + (CA)n Simple_repeat Simple_repeat 2 38 0 2909 192 93 30 chrX 68509209 68509723 -108464417 - LTR48 LTR ERV1 0 787 307 2292 146 22 0 chrX 68509723 68510079 -108464061 + THE1B LTR MaLR 1 364 0 9000 112 88 45 chrX 68510079 68511594 -108462546 + THE1B-int LTR MaLR 1 1580 0 2069 168 22 6 chrX 68511594 68511952 -108462188 + THE1B LTR MaLR 1 364 0 2909 192 93 30 chrX 68511952 68512175 -108461965 - LTR48 LTR ERV1 -479 308 1 1336 216 67 0 chrX 68512176 68512445 -108461695 - AluJo SINE Alu -21 291 5 260 365 33 0 chrX 68512693 68512826 -108461314 + MIR SINE MIR 21 156 -66 5581 122 8 5 chrX 68513021 68513908 -108460232 - L1MA1 LINE L1 0 6302 5413 260 313 139 0 chrX 68514268 68514412 -108459728 + L2 LINE L2 3116 3279 -34 698 218 42 18 chrX 68514419 68514584 -108459556 + MIR SINE MIR 93 261 -1 1325 194 18 3 chrX 68514620 68514903 -108459237 + L1MB1 LINE L1 5876 6162 -6 21 0 0 0 chrX 68514948 68514969 -108459171 + AT_rich Low_complexity Low_complexity 1 21 0 248 152 43 0 chrX 68515814 68515860 -108458280 + L2 LINE L2 3262 3309 -4 27 49 0 0 chrX 68516661 68516702 -108457438 + AT_rich Low_complexity Low_complexity 1 41 0 13515 164 63 19 chrX 68516836 68517656 -108456484 + L1PB1 LINE L1 162 944 -5923 2271 120 0 0 chrX 68517656 68517957 -108456183 + AluY SINE Alu 1 301 -10 13515 164 63 19 chrX 68517957 68523212 -108450928 + L1PB1 LINE L1 944 6525 -342 315 0 0 0 chrX 68523212 68523247 -108450893 + (TA)n Simple_repeat Simple_repeat 1 35 0 13515 164 63 19 chrX 68523247 68523604 -108450536 + L1PB1 LINE L1 6525 6865 -2 37 76 0 0 chrX 68523834 68523913 -108450227 + AT_rich Low_complexity Low_complexity 1 79 0 259 204 18 35 chrX 68524506 68524619 -108449521 + GA-rich Low_complexity Low_complexity 3 113 0 22 99 0 0 chrX 68524688 68524759 -108449381 + AT_rich Low_complexity Low_complexity 1 71 0 4853 62 15 3 chrX 68524822 68525934 -108448206 + MER11A LTR ERVK 1 1266 0 1851 160 0 0 chrX 68526154 68526458 -108447682 + AluSx SINE Alu 1 304 0 228 86 0 0 chrX 68528182 68528217 -108445923 + (TC)n Simple_repeat Simple_repeat 2 36 0 492 281 66 98 chrX 68528576 68528850 -108445290 - L2 LINE L2 -5 3267 3003 189 107 0 0 chrX 68528870 68528898 -108445242 + (TAA)n Simple_repeat Simple_repeat 1 28 0 497 273 29 7 chrX 68528949 68529096 -108445044 - MIR SINE MIR -62 146 9 197 194 0 0 chrX 68529266 68529302 -108444838 + MIR SINE MIR 156 191 -71 21 36 0 0 chrX 68529802 68529830 -108444310 + AT_rich Low_complexity Low_complexity 1 28 0 2117 112 3 22 chrX 68529975 68530287 -108443853 - AluY SINE Alu -5 306 1 2264 103 3 0 chrX 68530387 68530688 -108443452 + AluSp SINE Alu 2 303 -10 24 32 0 0 chrX 68531001 68531032 -108443108 + AT_rich Low_complexity Low_complexity 1 31 0 944 191 5 21 chrX 68531089 68531278 -108442862 - L1PA16 LINE L1 -1 6165 5980 1398 86 132 0 chrX 68531700 68531920 -108442220 + L1PA8 LINE L1 5913 6161 -11 185 229 43 121 chrX 68532952 68533092 -108441048 - L2 LINE L2 -173 3099 2971 2308 93 3 10 chrX 68533635 68533946 -108440194 + AluSq SINE Alu 1 309 -4 24 0 0 0 chrX 68535570 68535594 -108438546 + AT_rich Low_complexity Low_complexity 1 24 0 1788 195 148 23 chrX 68536174 68536661 -108437479 - LTR10A LTR ERV1 -61 548 1 325 333 25 0 chrX 68536679 68536799 -108437341 - MLT1L LTR MaLR -75 540 418 851 300 60 70 chrX 68536926 68537543 -108436597 + MLT1L LTR MaLR 1 611 -4 216 0 0 0 chrX 68537561 68537585 -108436555 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1834 145 14 4 chrX 68537585 68537861 -108436279 - AluSx SINE Alu -33 279 1 606 128 0 0 chrX 68537861 68537947 -108436193 - AluS SINE Alu -226 86 1 237 33 0 0 chrX 68537963 68537993 -108436147 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1857 75 0 35 chrX 68537996 68538251 -108435889 - AluY SINE Alu -31 280 35 814 241 73 22 chrX 68538254 68538958 -108435182 + Zaphod DNA AcHobo 1568 2431 -1600 2882 95 6 58 chrX 68538960 68539104 -108435036 + L1PA13 LINE L1 5694 5844 -337 2213 114 3 0 chrX 68539104 68539412 -108434728 + AluSp SINE Alu 1 309 -4 2882 95 6 58 chrX 68539412 68539654 -108434486 + L1PA13 LINE L1 5844 6051 -130 2179 112 3 0 chrX 68539654 68539958 -108434182 + AluSg SINE Alu 1 305 -5 2882 95 6 58 chrX 68539958 68540083 -108434057 + L1PA13 LINE L1 6051 6181 0 450 247 89 0 chrX 68540377 68540523 -108433617 + Zaphod DNA AcHobo 3275 3433 -598 2139 112 26 0 chrX 68540655 68540960 -108433180 - AluSq SINE Alu 0 313 1 1493 194 5 45 chrX 68541020 68541338 -108432802 + Zaphod DNA AcHobo 3445 3745 -286 2344 95 10 0 chrX 68541338 68541644 -108432496 + AluY SINE Alu 1 309 -2 1493 194 5 45 chrX 68541644 68541721 -108432419 + Zaphod DNA AcHobo 3745 3824 -207 410 291 8 17 chrX 68542651 68542768 -108431372 - MIR SINE MIR -136 126 11 249 278 0 0 chrX 68543036 68543090 -108431050 - MIR SINE MIR -6 256 203 348 312 52 35 chrX 68543125 68543298 -108430842 - MIR SINE MIR -3 259 84 307 335 60 23 chrX 68544487 68544705 -108429435 + L1M4 LINE L1 5026 5251 -895 334 262 43 49 chrX 68544708 68544872 -108429268 + L1M LINE L1 5255 5417 -2391 430 156 0 16 chrX 68544879 68544942 -108429198 - Tigger7 DNA MER2_type -19 2472 2411 1770 60 36 28 chrX 68544942 68545192 -108428948 + MER4E LTR ERV1 1 252 -514 1368 54 0 0 chrX 68545203 68545370 -108428770 + MER4E LTR ERV1 600 766 0 1927 104 31 7 chrX 68545370 68545658 -108428482 + MER4E-int LTR ERV1 1 295 -6463 1109 146 103 2 chrX 68545659 68545985 -108428155 + MER4E-int LTR ERV1 752 1182 -5576 * 7381 132 73 42 chrX 68545982 68546314 -108427826 + MER4E-int LTR ERV1 1444 1764 -4994 2080 135 3 0 chrX 68546314 68546626 -108427514 - AluSp SINE Alu 0 313 1 7381 132 73 42 chrX 68546626 68546732 -108427408 + MER4E-int LTR ERV1 1764 1865 -4893 4010 42 21 0 chrX 68546732 68547212 -108426928 - LTR2B LTR ERV1 0 490 1 7381 132 73 42 chrX 68547212 68547264 -108426876 + MER4E-int LTR ERV1 1865 1914 -4844 2337 97 3 0 chrX 68547264 68547572 -108426568 - AluSg SINE Alu 0 310 2 7381 132 73 42 chrX 68547572 68549189 -108424951 + MER4E-int LTR ERV1 1914 3083 -3675 3417 168 25 51 chrX 68549192 68549858 -108424282 + MER4E-int LTR ERV1 3429 4077 -2681 * 7713 149 64 16 chrX 68549845 68550910 -108423230 + MER4E-int LTR ERV1 4441 5710 -1048 1899 123 0 8 chrX 68550910 68551178 -108422962 - AluSx SINE Alu -9 303 38 7713 149 64 16 chrX 68551178 68551817 -108422323 + MER4E-int LTR ERV1 5710 6317 -441 819 150 15 3 chrX 68551823 68552230 -108421910 + (TA)n Simple_repeat Simple_repeat 1 412 0 1829 121 4 0 chrX 68552232 68552480 -108421660 - AluSp SINE Alu -64 249 1 1545 160 21 7 chrX 68552492 68552773 -108421367 + MER4E-int LTR ERV1 6361 6645 -113 2286 97 3 3 chrX 68552864 68553163 -108420977 + AluSx SINE Alu 1 299 -13 6571 124 106 132 chrX 68553759 68555523 -108418617 + pTR5 LTR ERV1 606 2438 0 2566 73 27 8 chrX 68555679 68556152 -108417988 + MER4E LTR ERV1 1 766 0 1236 138 117 0 chrX 68556152 68556392 -108417748 - Tigger7 DNA MER2_type -77 2410 2143 927 172 258 0 chrX 68556390 68556611 -108417529 + Tigger7 DNA MER2_type 76 353 -2134 * 367 222 0 25 chrX 68556603 68556684 -108417456 - Tigger7 DNA MER2_type -2407 80 2 * 624 295 31 9 chrX 68556684 68556908 -108417232 + L1MC/D LINE L1 5416 5644 -2164 213 196 0 0 chrX 68556984 68557030 -108417110 + (TA)n Simple_repeat Simple_repeat 1 46 0 608 299 29 18 chrX 68557450 68557702 -108416438 + MIR SINE MIR 6 256 -6 322 254 27 77 chrX 68557747 68557928 -108416212 + MIR SINE MIR 43 215 -47 187 326 35 12 chrX 68557940 68558026 -108416114 - L3b LINE CR1 -75 1508 1421 405 327 6 30 chrX 68558626 68558794 -108415346 - L3 LINE CR1 -54 1523 1360 320 298 70 38 chrX 68558936 68559094 -108415046 - L3 LINE CR1 -508 1069 907 297 51 0 0 chrX 68559095 68559134 -108415006 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 180 152 0 0 chrX 68559188 68559221 -108414919 + (TG)n Simple_repeat Simple_repeat 2 34 0 748 236 112 37 chrX 68559554 68559582 -108414558 + MIR SINE MIR 3 27 -235 1300 171 109 67 chrX 68559582 68560014 -108414126 - LTR7 LTR ERV1 0 450 1 748 236 112 37 chrX 68560014 68560227 -108413913 + MIR SINE MIR 27 262 0 21 0 0 0 chrX 68560227 68560248 -108413892 + AT_rich Low_complexity Low_complexity 1 21 0 215 186 0 17 chrX 68560413 68560472 -108413668 + CT-rich Low_complexity Low_complexity 3 60 0 274 287 0 69 chrX 68561274 68561375 -108412765 + MIR3 SINE MIR 77 170 -38 205 292 0 0 chrX 68561417 68561465 -108412675 + L2 LINE L2 3210 3257 -15 187 222 0 0 chrX 68561492 68561537 -108412603 + MIR SINE MIR 162 206 -56 436 296 116 11 chrX 68564562 68564784 -108409356 - MIR SINE MIR -17 245 3 2250 101 7 0 chrX 68565062 68565438 -108408702 - AluSc SINE Alu 0 378 1 21 36 0 0 chrX 68565839 68565867 -108408273 + AT_rich Low_complexity Low_complexity 1 28 0 248 350 29 50 chrX 68566476 68566616 -108407524 + MIR3 SINE MIR 14 150 -58 3134 170 36 98 chrX 68566955 68567799 -108406341 + L1MC2 LINE L1 5546 6331 -2 1828 201 2 44 chrX 68568064 68568471 -108405669 + MLT1B LTR MaLR 1 390 0 554 356 14 5 chrX 68568899 68569118 -108405022 - MIR SINE MIR -40 222 2 249 139 0 0 chrX 68569139 68569175 -108404965 + MER53 DNA DNA 2 37 -152 2015 130 0 3 chrX 68570088 68570406 -108403734 + AluSg SINE Alu 1 310 0 4214 65 7 17 chrX 68571796 68572385 -108401755 - L1P LINE L1 -2055 4091 3509 7533 31 1 1 chrX 68572385 68573379 -108400761 + L1PA5 LINE L1 5150 6146 -8 420 20 0 0 chrX 68573379 68573428 -108400712 + (TA)n Simple_repeat Simple_repeat 2 50 0 249 33 0 0 chrX 68574108 68574138 -108400002 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1726 133 28 45 chrX 68576664 68576787 -108397353 + AluSx SINE Alu 1 125 -198 372 59 0 0 chrX 68576787 68576838 -108397302 + (CA)n Simple_repeat Simple_repeat 2 52 0 1726 133 28 45 chrX 68576838 68577042 -108397098 + AluSx SINE Alu 125 323 0 226 346 13 13 chrX 68579753 68579831 -108394309 - MIR3 SINE MIR -129 79 2 185 305 84 32 chrX 68580430 68580525 -108393615 + L2 LINE L2 3173 3272 0 282 29 0 0 chrX 68583280 68583315 -108390825 + (CA)n Simple_repeat Simple_repeat 1 35 0 25 0 0 0 chrX 68583430 68583455 -108390685 + AT_rich Low_complexity Low_complexity 1 25 0 247 313 0 0 chrX 68584139 68584206 -108389934 + MIR SINE MIR 189 255 -7 22 56 0 0 chrX 68584369 68584405 -108389735 + AT_rich Low_complexity Low_complexity 1 36 0 190 256 56 104 chrX 68585425 68585550 -108388590 - MIR3 SINE MIR -15 193 75 2496 162 12 2 chrX 68586835 68587261 -108386879 - THE1C-int LTR MaLR -1150 430 1 1512 116 18 197 chrX 68587261 68587357 -108386783 - THE1C LTR MaLR 0 375 263 2051 88 3 69 chrX 68587357 68587662 -108386478 - AluSg SINE Alu -25 285 1 1512 116 18 197 chrX 68587662 68588022 -108386118 - THE1C LTR MaLR -112 263 1 495 181 16 8 chrX 68588266 68588393 -108385747 + (TA)n Simple_repeat Simple_repeat 1 128 0 327 351 29 32 chrX 68589578 68589822 -108384318 + MIR SINE MIR 16 258 -4 2484 83 0 3 chrX 68589952 68590264 -108383876 + AluY SINE Alu 1 311 0 21 36 0 0 chrX 68590503 68590531 -108383609 + AT_rich Low_complexity Low_complexity 1 28 0 1681 192 4 0 chrX 68591912 68592188 -108381952 + AluJo SINE Alu 1 277 -35 2346 99 0 0 chrX 68592303 68592607 -108381533 - AluSg SINE Alu -4 306 3 226 348 37 30 chrX 68592949 68593084 -108381056 + L2 LINE L2 3172 3307 -6 415 249 69 81 chrX 68594082 68594255 -108379885 - MLT1H LTR MaLR -2 547 377 704 256 39 34 chrX 68594353 68594560 -108379580 - MLT1H LTR MaLR -335 214 7 2484 57 23 0 chrX 68594582 68594883 -108379257 - AluY SINE Alu -1 310 3 1370 232 10 7 chrX 68595118 68595415 -108378725 + L1MA9 LINE L1 1 298 -6732 2513 266 62 45 chrX 68595423 68597088 -108377052 + L1MA9 LINE L1 1439 3074 -4032 2079 127 0 13 chrX 68597088 68597387 -108376753 + AluSx SINE Alu 1 295 -17 2513 266 62 45 chrX 68597387 68597799 -108376341 + L1MA9 LINE L1 3074 3477 -3629 1883 203 68 2 chrX 68597799 68598199 -108375941 - MSTB LTR MaLR 0 426 1 2513 266 62 45 chrX 68598199 68598333 -108375807 + L1MA9 LINE L1 3477 3607 -3499 1834 210 70 8 chrX 68598333 68598733 -108375407 - MSTB LTR MaLR 0 426 2 2513 266 62 45 chrX 68598733 68599558 -108374582 + L1MA9 LINE L1 3607 4149 -2957 10042 213 44 39 chrX 68599567 68602762 -108371378 + L1P3 LINE L1 7 3305 -3156 356 0 23 0 chrX 68602802 68602846 -108371294 + (TA)n Simple_repeat Simple_repeat 1 45 0 4764 199 23 17 chrX 68602849 68604101 -108370039 + L1MA9 LINE L1 5205 6472 -800 4872 157 19 0 chrX 68604101 68605115 -108369025 - L1PA16 LINE L1 -1 6165 5128 4764 199 23 17 chrX 68605115 68605270 -108368870 + L1MA9 LINE L1 6472 6625 -647 2077 194 55 8 chrX 68605286 68605761 -108368379 + L1MA9 LINE L1 6776 7272 0 660 229 15 20 chrX 68605795 68605996 -108368144 + L1MC1 LINE L1 4864 5063 -1083 803 176 0 0 chrX 68605998 68606123 -108368017 + AluSq/x SINE Alu 2 126 -187 405 211 0 0 chrX 68606125 68606220 -108367920 + LTR23-int LTR ERV1 1999 2093 -3030 815 129 0 0 chrX 68606226 68606342 -108367798 + AluY SINE Alu 157 272 -39 560 154 10 0 chrX 68606348 68606452 -108367688 + GA-rich Low_complexity Low_complexity 2 106 0 1154 47 35 6 chrX 68606452 68606624 -108367516 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 1714 218 39 0 chrX 68606632 68607155 -108366985 + L1MC1 LINE L1 5068 5619 -714 1540 197 58 50 chrX 68607155 68607359 -108366781 - MLT1A1 LTR MaLR -2 363 153 1445 184 26 7 chrX 68607359 68607663 -108366477 - L1MA4A LINE L1 -6 6297 5988 1540 197 58 50 chrX 68607663 68607818 -108366322 - MLT1A1 LTR MaLR -212 153 1 3196 198 25 28 chrX 68607818 68607986 -108366154 + L1MC1 LINE L1 5615 5782 -551 1984 141 0 0 chrX 68607986 68608308 -108365832 + AluSx SINE Alu 1 322 0 3196 198 25 28 chrX 68608308 68608432 -108365708 + L1MC1 LINE L1 5782 5905 -428 2183 114 10 7 chrX 68608432 68608740 -108365400 + AluSx SINE Alu 1 309 -3 3196 198 25 28 chrX 68608740 68609166 -108364974 + L1MC1 LINE L1 5905 6333 0 461 289 37 30 chrX 68609573 68609708 -108364432 - MER5B DNA MER1_type -2 176 41 1850 227 37 3 chrX 68609708 68610082 -108364058 + MLT2B3 LTR ERVL 1 387 -167 314 226 0 0 chrX 68610088 68610172 -108363968 - LTR24 LTR ERV1 0 467 384 1595 154 52 10 chrX 68610180 68610485 -108363655 - LTR23 LTR ERV1 -119 318 1 3307 186 18 13 chrX 68610486 68611036 -108363104 - LTR23-int LTR ERV1 0 5689 5143 512 138 0 0 chrX 68611036 68611116 -108363024 + MADE1 DNA Mariner 1 80 0 3307 186 18 13 chrX 68611116 68611588 -108362552 - LTR23-int LTR ERV1 -546 5143 4427 1792 236 102 76 chrX 68611590 68612316 -108361824 + LTR1B LTR ERV1 1 745 -81 4272 203 53 48 chrX 68612419 68613159 -108360981 - LTR23-int LTR ERV1 -1044 4902 4168 2146 116 0 3 chrX 68613159 68613453 -108360687 - AluSc SINE Alu -15 294 2 4272 203 53 48 chrX 68613453 68614832 -108359308 - LTR23-int LTR ERV1 -1778 4168 1743 3177 126 2 74 chrX 68614834 68615481 -108358659 + MER4B LTR ERV1 1 777 -2 1645 175 7 11 chrX 68615483 68615769 -108358371 + MER4B-int LTR ERV1 1 285 -6473 6211 152 17 40 chrX 68615819 68617014 -108357126 + MER4B-int LTR ERV1 252 2113 -3473 443 180 0 11 chrX 68617019 68617108 -108357032 + MER4A LTR ERV1 10 97 -567 927 134 4 105 chrX 68617110 68617364 -108356776 + MER4A LTR ERV1 262 548 -116 6089 120 80 55 chrX 68617364 68617649 -108356491 + MER4A-int LTR ERV1 43 319 -4696 442 0 0 33 chrX 68617649 68617709 -108356431 + (TTTTA)n Simple_repeat Simple_repeat 4 61 0 6089 120 80 55 chrX 68617709 68619476 -108354664 + MER4A-int LTR ERV1 319 1649 -3366 1349 119 132 0 chrX 68619477 68619704 -108354436 - LTR8 LTR ERV1 -434 257 1 3224 140 93 17 chrX 68619704 68620494 -108353646 + MER4A-int LTR ERV1 2737 3679 -2919 15558 119 46 16 chrX 68620520 68623151 -108350989 + MER4A-int LTR ERV1 3888 6596 -2 618 140 0 10 chrX 68623158 68623258 -108350882 + MER4A LTR ERV1 1 99 -565 1551 164 3 67 chrX 68623300 68623612 -108350528 + MER4A LTR ERV1 373 664 0 734 176 7 7 chrX 68623612 68623745 -108350395 + MER4E LTR ERV1 627 759 -7 886 224 66 15 chrX 68623755 68624014 -108350126 - LTR56-int LTR ERV1 -3382 1741 1470 946 200 27 47 chrX 68624133 68624511 -108349629 - LTR56-int LTR ERV1 -4601 522 17 702 146 4 4 chrX 68624529 68624688 -108349452 - LTR56 LTR ERV1 -2 465 305 696 151 75 14 chrX 68624685 68624831 -108349309 - LTR23 LTR ERV1 -282 155 1 * 748 226 24 18 chrX 68624831 68624950 -108349190 + MLT2B3 LTR ERVL 390 512 -42 318 26 0 0 chrX 68624950 68624989 -108349151 + (TG)n Simple_repeat Simple_repeat 2 40 0 748 226 24 18 chrX 68624989 68625033 -108349107 + MLT2B3 LTR ERVL 512 554 0 6469 256 34 8 chrX 68625033 68626717 -108347423 + ERVL-B3 LTR ERVL 1 1733 -3960 * 18173 191 20 9 chrX 68626715 68630465 -108343675 + ERVL-B3 LTR ERVL 1875 5757 -7 2056 236 13 42 chrX 68630465 68630987 -108343153 + MLT2B3 LTR ERVL 1 507 -47 1871 184 9 0 chrX 68630998 68631340 -108342800 + MER7A DNA MER2_type 3 345 -1 189 107 0 0 chrX 68631380 68631408 -108342732 + (CA)n Simple_repeat Simple_repeat 2 29 0 336 317 25 8 chrX 68631630 68631750 -108342390 - MIR SINE MIR -94 168 47 23 33 0 0 chrX 68632915 68632945 -108341195 + AT_rich Low_complexity Low_complexity 1 30 0 337 231 15 118 chrX 68634151 68634346 -108339794 - L1MC4 LINE L1 0 8042 7868 2319 190 0 0 chrX 68634349 68634738 -108339402 + L1PA12 LINE L1 1 389 -7192 1445 235 46 99 chrX 68634738 68635384 -108338756 + LTR9 LTR ERV1 1 612 0 4265 216 48 21 chrX 68635398 68637019 -108337121 + HUERS-P3 LTR ERV1 17 1747 -5671 13314 130 20 7 chrX 68637035 68638273 -108335867 + HUERS-P3 LTR ERV1 1956 3231 -5688 378 108 0 0 chrX 68638273 68638338 -108335802 + (TA)n Simple_repeat Simple_repeat 1 65 0 13314 130 20 7 chrX 68638338 68639093 -108335047 + HUERS-P3 LTR ERV1 3231 3975 -4944 254 167 17 17 chrX 68639097 68639157 -108334983 + L1MC4 LINE L1 7193 7252 -790 2943 134 42 64 chrX 68639197 68639809 -108334331 + MER4A LTR ERV1 1 599 -1 2462 259 82 13 chrX 68639886 68640558 -108333582 - MER21B LTR ERV1 -124 739 22 707 239 60 5 chrX 68640601 68640785 -108333355 + L1MC4a LINE L1 7168 7361 -447 3738 138 12 99 chrX 68640794 68641540 -108332600 - LTR8 LTR ERV1 -8 683 3 758 201 96 5 chrX 68641541 68641750 -108332390 + L1MC4 LINE L1 7436 7663 -379 1516 167 54 79 chrX 68642376 68642693 -108331447 + THE1B LTR MaLR 56 364 0 10652 114 17 0 chrX 68642693 68644247 -108329893 + THE1B-int LTR MaLR 1 1580 0 1635 159 68 88 chrX 68644247 68644612 -108329528 + THE1B LTR MaLR 1 358 -6 12535 189 29 19 chrX 68644612 68647813 -108326327 + L1MA3 LINE L1 1250 4415 -3309 2037 109 0 14 chrX 68647813 68648098 -108326042 + AluSq SINE Alu 3 283 -30 12535 189 29 19 chrX 68648098 68649008 -108325132 + L1MA3 LINE L1 4415 5314 -2410 2328 114 3 0 chrX 68649008 68649351 -108324789 + L1PA13 LINE L1 5817 6160 -3 12535 189 29 19 chrX 68649351 68651616 -108322524 + L1MA3 LINE L1 5314 7702 -22 230 0 33 0 chrX 68651616 68651646 -108322494 + (TA)n Simple_repeat Simple_repeat 1 31 0 12535 189 29 19 chrX 68651646 68651670 -108322470 + L1MA3 LINE L1 7702 7724 0 375 266 0 0 chrX 68652646 68652724 -108321416 + Tigger5 DNA MER2_type 1 78 -2245 361 205 0 26 chrX 68652724 68652802 -108321338 - Tigger5 DNA MER2_type -3 2320 2245 * 384 188 25 0 chrX 68652795 68652875 -108321265 + Tigger5 DNA MER2_type 2242 2323 0 225 94 0 0 chrX 68652944 68652976 -108321164 + (T)n Simple_repeat Simple_repeat 1 32 0 303 165 177 0 chrX 68653516 68653595 -108320545 - L1MA3 LINE L1 0 6305 6213 2530 137 11 120 chrX 68653595 68654210 -108319930 - L1MA3 LINE L1 -42 6263 5716 209 125 0 25 chrX 68654210 68654250 -108319890 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 10894 216 20 11 chrX 68654250 68658049 -108316091 - L1MA1 LINE L1 -23 7698 3861 6512 192 22 14 chrX 68658061 68659350 -108314790 - L1MA1 LINE L1 -4965 2600 1302 1172 123 17 0 chrX 68659382 68659610 -108314530 + L1PA14 LINE L1 5973 6203 0 6900 201 55 22 chrX 68659611 68660577 -108313563 - L1MA3 LINE L1 -580 5725 4792 198 0 0 0 chrX 68660577 68660599 -108313541 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 6900 201 55 22 chrX 68660599 68661789 -108312351 - L1MA3 LINE L1 -1513 4792 3496 6290 174 13 2 chrX 68661797 68663777 -108310363 - L1PA11 LINE L1 -5 6169 4179 335 22 0 22 chrX 68663806 68663851 -108310289 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 826 31 0 0 chrX 68663851 68663948 -108310192 - L1PA8 LINE L1 -24 6148 6052 * 2844 146 5 0 chrX 68663942 68664386 -108309754 - L1PA11 LINE L1 -1952 4194 3749 3009 175 18 30 chrX 68664488 68664830 -108309310 + L1MA6 LINE L1 4984 5329 -971 2406 75 0 0 chrX 68664830 68665135 -108309005 + AluY SINE Alu 1 305 -6 3009 175 18 30 chrX 68665135 68665628 -108308512 + L1MA6 LINE L1 5329 5819 -481 1519 214 12 9 chrX 68665631 68665972 -108308168 + L1MA6 LINE L1 5949 6290 -10 21 0 0 0 chrX 68666238 68666259 -108307881 + AT_rich Low_complexity Low_complexity 1 21 0 5638 73 3 1 chrX 68666410 68667150 -108306990 - L1PA8A LINE L1 -27 6104 5364 1842 109 31 0 chrX 68667148 68667442 -108306698 + L1PA8A LINE L1 5056 5358 -788 * 1457 214 22 9 chrX 68667438 68667756 -108306384 - L1MB5 LINE L1 -32 6142 5821 * 1373 219 19 49 chrX 68668271 68668640 -108305500 - MLT1A1 LTR MaLR -4 361 4 798 166 9 1 chrX 68670070 68670227 -108303913 + L1MC/D LINE L1 5308 5465 -743 543 241 43 102 chrX 68670339 68670712 -108303428 - L1M4b LINE L1 -4685 2453 2103 2049 111 45 0 chrX 68670715 68671004 -108303136 - AluSg SINE Alu -8 302 1 5351 91 8 1 chrX 68671004 68671752 -108302388 - L1P LINE L1 -1239 4907 4155 3819 87 2 0 chrX 68671751 68672258 -108301882 + L1P LINE L1 3644 4151 -1995 * 429 244 159 26 chrX 68672251 68672805 -108301335 - L1M4b LINE L1 -4951 1904 1335 * 260 274 0 0 chrX 68672900 68672962 -108301178 + MER68 LTR ERV1 1 62 -543 1613 256 81 19 chrX 68673011 68673523 -108300617 + MER68 LTR ERV1 41 562 0 2511 53 0 3 chrX 68673579 68673879 -108300261 - AluY SINE Alu -12 299 1 887 316 9 9 chrX 68674109 68674426 -108299714 + MLT1-int LTR MaLR 285 601 -770 515 176 0 11 chrX 68674714 68674805 -108299335 + MLT1F1 LTR MaLR 476 565 -2 216 0 0 0 chrX 68675182 68675206 -108298934 + (TA)n Simple_repeat Simple_repeat 2 25 0 1521 171 46 41 chrX 68675629 68675998 -108298142 - L1MA7 LINE L1 0 6291 5921 2686 200 79 37 chrX 68676175 68677021 -108297119 - L1M4 LINE L1 -701 5473 4590 373 66 33 0 chrX 68678105 68678166 -108295974 + (GA)n Simple_repeat Simple_repeat 1 63 0 205 286 127 0 chrX 68678577 68678640 -108295500 + L2 LINE L2 3184 3254 -18 225 337 173 12 chrX 68678664 68678919 -108295221 + L2 LINE L2 1992 2287 -1027 365 327 48 6 chrX 68679027 68679195 -108294945 + MIR SINE MIR 20 194 -68 213 271 143 30 chrX 68679250 68679383 -108294757 + L2 LINE L2 2359 2506 -808 1367 199 72 0 chrX 68679759 68680035 -108294105 + AluJo SINE Alu 1 296 -16 530 217 116 8 chrX 68680043 68680172 -108293968 + MIR SINE MIR 29 171 -91 455 183 98 0 chrX 68681369 68681451 -108292689 - MER81 DNA DNA -24 90 1 357 232 12 24 chrX 68687050 68687132 -108287008 + MER5B DNA MER1_type 6 86 -92 586 265 60 21 chrX 68689385 68689698 -108284442 - L1ME LINE L1 -641 5525 5199 230 56 28 0 chrX 68689812 68689848 -108284292 + (TAA)n Simple_repeat Simple_repeat 2 38 0 515 296 19 0 chrX 68691027 68691186 -108282954 + MIR SINE MIR 94 255 -7 2040 82 0 4 chrX 68691269 68691536 -108282604 - AluY SINE Alu -2 309 44 425 274 107 57 chrX 68691888 68692112 -108282028 + MIR SINE MIR 24 262 0 224 250 54 0 chrX 68692470 68692526 -108281614 - L2 LINE L2 -4 3268 3210 378 0 0 0 chrX 68693696 68693738 -108280402 + (CA)n Simple_repeat Simple_repeat 2 43 0 1043 256 153 107 chrX 68695359 68696407 -108277733 + MER52A LTR ERV1 660 1755 0 1285 312 56 7 chrX 68696467 68696896 -108277244 + LTR33 LTR ERVL 1 450 -71 232 239 62 44 chrX 68697411 68697524 -108276616 + L1M4 LINE L1 122 236 -6623 1536 260 100 34 chrX 68697901 68698924 -108275216 + L1M4 LINE L1 1342 2400 -4559 596 180 33 8 chrX 68699006 68699128 -108275012 - MLT1A1 LTR MaLR -15 350 226 798 169 5 25 chrX 68699143 68699331 -108274809 + MSTD LTR MaLR 15 194 -171 3320 251 66 53 chrX 68699342 68700646 -108273494 + L1M4 LINE L1 4461 5789 -1168 1476 244 101 19 chrX 68700646 68700837 -108273303 + MLT1D LTR MaLR 1 175 -330 381 22 0 0 chrX 68700837 68700883 -108273257 + (TG)n Simple_repeat Simple_repeat 2 47 0 1476 244 101 19 chrX 68700883 68701158 -108272982 + MLT1D LTR MaLR 175 505 0 3320 251 66 53 chrX 68701158 68701388 -108272752 + L1M4 LINE L1 5789 6015 -942 1363 240 49 7 chrX 68701367 68701812 -108272328 + L1M4c LINE L1 1001 1464 -4920 * 1140 217 12 4 chrX 68701913 68702153 -108271987 - L1 LINE L1 -1280 4866 4625 1157 321 53 6 chrX 68702161 68702628 -108271512 + L1PA12 LINE L1 9 497 -7084 298 289 88 81 chrX 68703183 68703456 -108270684 + L1M2 LINE L1 793 1067 -5782 1594 233 49 15 chrX 68703740 68704227 -108269913 + L1PA12 LINE L1 1849 2444 -5140 255 146 0 0 chrX 68704344 68704385 -108269755 - LTR30 LTR ERV1 -135 587 547 1820 61 9 153 chrX 68704385 68704711 -108269429 - LTR12 LTR ERV1 -435 279 1 7126 115 14 22 chrX 68704712 68705295 -108268845 - MER4E-int LTR ERV1 -5435 1323 752 3034 126 98 94 chrX 68705295 68705956 -108268184 - MER4A LTR ERV1 0 664 1 7126 115 14 22 chrX 68705956 68706467 -108267673 - MER4E-int LTR ERV1 -6006 752 238 1674 147 64 4 chrX 68706513 68706779 -108267361 - MER4E-int LTR ERV1 -6476 282 1 2274 148 42 5 chrX 68706779 68707157 -108266983 - MER4E LTR ERV1 0 779 388 257 149 21 0 chrX 68707261 68707308 -108266832 + L1 LINE L1 2943 2990 -3156 4881 165 19 23 chrX 68707311 68708406 -108265734 + L1PA16 LINE L1 5068 6155 -11 465 239 45 11 chrX 68708426 68708566 -108265574 + L1MEc LINE L1 1533 1646 -4738 * 39808 58 2 17 chrX 68708563 68713691 -108260449 + L1P LINE L1 14 5064 -1082 9412 222 30 47 chrX 68713812 68715883 -108258257 + L1 LINE L1 2570 4675 -1707 2381 89 0 0 chrX 68715883 68716174 -108257966 - AluSc SINE Alu -18 291 1 9412 222 30 47 chrX 68716174 68716244 -108257896 + L1 LINE L1 4675 4745 -1637 246 81 0 0 chrX 68716244 68716281 -108257859 + (CA)n Simple_repeat Simple_repeat 1 37 0 9412 222 30 47 chrX 68716281 68717048 -108257092 + L1 LINE L1 4745 5429 -953 3829 240 99 8 chrX 68717189 68718486 -108255654 - L1M1 LINE L1 -4171 3038 1739 1455 316 45 38 chrX 68718684 68719393 -108254747 - L1M1 LINE L1 -6123 1086 160 825 279 88 22 chrX 68719590 68719981 -108254159 + L1MC4a LINE L1 5485 5822 -299 656 300 70 26 chrX 68719987 68720217 -108253923 + MIR SINE MIR 2 241 -21 209 211 21 63 chrX 68720878 68720973 -108253167 + GA-rich Low_complexity Low_complexity 4 94 0 247 274 48 65 chrX 68721511 68721635 -108252505 + MIR SINE MIR 122 243 -19 232 231 44 0 chrX 68723001 68723092 -108251048 + L1ME1 LINE L1 4412 4506 -1640 702 240 106 0 chrX 68723244 68723519 -108250621 + L1ME1 LINE L1 4755 5058 -1088 * 24461 126 8 33 chrX 68723516 68728470 -108245670 - L1PA7 LINE L1 -1081 5380 554 6926 56 6 0 chrX 68728470 68729600 -108244540 + L1PA7 LINE L1 5358 6469 0 2168 246 62 47 chrX 68729613 68730698 -108243442 + L1ME1 LINE L1 5030 6122 -44 478 217 33 33 chrX 68730599 68730751 -108243389 + L1MA10 LINE L1 6182 6333 -1 * 753 289 36 0 chrX 68730859 68731084 -108243056 + MIR SINE MIR 4 236 -26 495 210 37 2 chrX 68731189 68731324 -108242816 - L1MA9 LINE L1 -281 5875 5736 * 1480 177 47 44 chrX 68731319 68731726 -108242414 + L1MA9 LINE L1 5871 6278 -34 726 287 55 38 chrX 68731734 68731971 -108242169 + MIR SINE MIR 20 260 -2 864 269 112 3 chrX 68732002 68732351 -108241789 + Charlie2b DNA MER1_type 881 1267 -1515 748 20 0 0 chrX 68732477 68732575 -108241565 - L1PA4 LINE L1 -138 6017 5920 1553 258 67 79 chrX 68732794 68733753 -108240387 + L1M4b LINE L1 17 1022 -5837 1073 189 49 12 chrX 68733750 68733993 -108240147 + L1PA16 LINE L1 5899 6150 -16 * 248 292 146 0 chrX 68734026 68734156 -108239984 + L1M4b LINE L1 1013 1161 -5698 244 159 0 0 chrX 68734248 68734292 -108239848 + L1M4b LINE L1 1879 1922 -5037 971 272 73 22 chrX 68734298 68734851 -108239289 - MER76 LTR ERV -44 644 1 244 284 27 0 chrX 68735074 68735148 -108238992 + L2 LINE L2 2680 2755 -559 248 208 0 0 chrX 68735420 68735468 -108238672 + C-rich Low_complexity Low_complexity 3 50 0 510 17 0 0 chrX 68735568 68735627 -108238513 + (TG)n Simple_repeat Simple_repeat 2 60 0 259 229 131 49 chrX 68736486 68736608 -108237532 + MIR SINE MIR 21 152 -110 201 236 214 0 chrX 68736731 68736820 -108237320 + MIR SINE MIR 38 145 -63 183 289 111 22 chrX 68737314 68737404 -108236736 - MIR SINE MIR -69 139 42 1167 132 10 0 chrX 68737529 68737726 -108236414 - L1P5 LINE L1 -483 5673 5475 6863 51 10 1 chrX 68737741 68739288 -108234852 - L1PA7 LINE L1 -3 6151 4588 5307 82 91 0 chrX 68739296 68740103 -108234037 + L1PA7 LINE L1 3739 4618 -1528 363 89 0 0 chrX 68740094 68740150 -108233990 - L1P5 LINE L1 -681 5484 5429 * 805 298 43 38 chrX 68740152 68740570 -108233570 + L2 LINE L2 2756 3313 0 181 353 96 7 chrX 68740617 68740753 -108233387 - L2 LINE L2 -6 3307 3160 2290 188 24 9 chrX 68740845 68741265 -108232875 + MSTB LTR MaLR 1 426 0 2719 116 3 0 chrX 68742444 68742816 -108231324 + THE1C LTR MaLR 3 375 0 1105 162 4 75 chrX 68742919 68743172 -108230968 + MER46A DNA MER2_type 2 236 0 193 364 0 0 chrX 68743231 68743286 -108230854 - L2 LINE L2 -14 3258 3204 570 297 168 0 chrX 68743298 68743500 -108230640 + MIR SINE MIR 4 239 -23 906 120 99 151 chrX 68743728 68744020 -108230120 + LTR12 LTR ERV1 1 277 -437 361 222 10 0 chrX 68744020 68744119 -108230021 + LTR30 LTR ERV1 544 643 -79 650 129 0 0 chrX 68744120 68744221 -108229919 + LTR12 LTR ERV1 481 581 -133 308 318 114 41 chrX 68744322 68744567 -108229573 - L2 LINE L2 -554 2760 2498 2198 99 95 113 chrX 68744874 68745369 -108228771 - THE1C-int LTR MaLR -1094 486 1 2169 157 11 13 chrX 68745369 68745745 -108228395 - THE1C LTR MaLR 0 375 1 2638 102 5 11 chrX 68745787 68746161 -108227979 - THE1C LTR MaLR -1 374 3 33 56 0 0 chrX 68746579 68746633 -108227507 + AT_rich Low_complexity Low_complexity 1 54 0 286 292 83 21 chrX 68746773 68746869 -108227271 - L2 LINE L2 -528 2786 2685 269 298 156 28 chrX 68747282 68747423 -108226717 + MIR3 SINE MIR 30 188 -20 892 197 5 10 chrX 68747558 68747751 -108226389 + MLT2D LTR ERVL 1 192 -222 782 241 6 0 chrX 68747854 68748020 -108226120 + MLT2D LTR ERVL 193 359 -55 24015 128 13 57 chrX 68748030 68752708 -108221432 + L1P LINE L1 593 5065 -1081 808 223 137 46 chrX 68752706 68753502 -108220638 - L1M4 LINE L1 -1089 5293 4376 * 6718 66 8 10 chrX 68753505 68754883 -108219257 + L1PA7 LINE L1 4773 6150 -4 256 143 0 86 chrX 68754892 68754917 -108219223 + MLT2C2 LTR ERVL 401 427 -37 336 24 0 0 chrX 68754917 68754958 -108219182 + (CA)n Simple_repeat Simple_repeat 1 41 0 256 143 0 86 chrX 68754958 68755002 -108219138 + MLT2C2 LTR ERVL 427 464 0 29 28 0 0 chrX 68756079 68756115 -108218025 + AT_rich Low_complexity Low_complexity 1 36 0 273 272 72 36 chrX 68756168 68756363 -108217777 - L1M4 LINE L1 -4240 2144 1943 308 142 9 113 chrX 68756396 68756502 -108217638 - L1M4 LINE L1 -4576 1808 1714 1964 179 66 15 chrX 68756515 68756922 -108217218 - MSTA LTR MaLR 0 428 1 7432 36 0 3 chrX 68756963 68758063 -108216077 - L1PA4 LINE L1 -3 6152 5055 10995 231 18 28 chrX 68758177 68760329 -108213811 - L1P3 LINE L1 -2451 4010 1908 1247 119 5 15 chrX 68760329 68760531 -108213609 - L1PA3 LINE L1 0 6155 5956 10995 231 18 28 chrX 68760531 68761719 -108212421 - L1P3 LINE L1 -4553 1908 710 727 247 34 4 chrX 68761716 68761955 -108212185 - L1 LINE L1 -2642 3504 3259 * 6940 64 6 0 chrX 68761959 68763612 -108210528 + L1PA7 LINE L1 4447 6154 0 2149 103 0 0 chrX 68763696 68764020 -108210120 + AluY SINE Alu 1 324 0 708 289 69 0 chrX 68764246 68764450 -108209690 - MIR SINE MIR -30 232 15 367 274 15 37 chrX 68764690 68764825 -108209315 + MIR SINE MIR 107 238 -24 2215 171 22 7 chrX 68767105 68767521 -108206619 - MSTA LTR MaLR 0 428 7 8369 175 53 4 chrX 68767527 68769101 -108205039 - MSTA-int LTR MaLR 0 1651 1 2333 162 21 14 chrX 68769101 68769526 -108204614 - MSTA LTR MaLR 0 428 1 195 345 117 41 chrX 68769542 68769687 -108204453 - L2 LINE L2 -5 3267 3112 249 337 35 41 chrX 68769806 68769978 -108204162 - L2 LINE L2 -240 3032 2862 206 323 92 43 chrX 68770006 68770170 -108203970 + MIR SINE MIR 81 252 -10 572 231 141 6 chrX 68770268 68770424 -108203716 + MIR SINE MIR 85 261 -1 228 35 0 0 chrX 68770639 68770668 -108203472 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 280 333 40 0 chrX 68770672 68770771 -108203369 - L2 LINE L2 -20 3293 3191 376 282 8 30 chrX 68771089 68771220 -108202920 + MIR SINE MIR 73 200 -62 181 354 121 10 chrX 68771232 68771331 -108202809 + MER5B DNA MER1_type 69 178 0 446 251 10 26 chrX 68771422 68771617 -108202523 - L1MEc LINE L1 -2865 3350 3159 1238 308 72 39 chrX 68771619 68773641 -108200499 - L1MEc LINE L1 -3090 3125 1070 326 276 276 15 chrX 68774521 68774720 -108199420 - MIR SINE MIR -10 252 2 24 0 0 0 chrX 68774743 68774767 -108199373 + AT_rich Low_complexity Low_complexity 1 24 0 6910 224 64 22 chrX 68774770 68777905 -108196235 - L1PA16 LINE L1 -5 6218 2960 7485 223 29 16 chrX 68777930 68779871 -108194269 + L1 LINE L1 2246 4212 -1934 4558 247 19 12 chrX 68779884 68780785 -108193355 - L1PA16 LINE L1 -3945 2258 1255 2424 88 0 0 chrX 68780785 68781092 -108193048 - AluSg SINE Alu -3 307 1 4558 247 19 12 chrX 68781092 68781568 -108192572 - L1PA16 LINE L1 -4948 1255 784 180 398 44 9 chrX 68782606 68782719 -108191421 + L2 LINE L2 2957 3073 -199 330 333 133 13 chrX 68782771 68782996 -108191144 + MIR SINE MIR 11 262 0 469 284 57 57 chrX 68783311 68783522 -108190618 - MIR SINE MIR -46 216 6 2345 275 51 21 chrX 68783622 68784711 -108189429 - L1ME1 LINE L1 -11 6155 5034 21 0 0 0 chrX 68785275 68785296 -108188844 + AT_rich Low_complexity Low_complexity 1 21 0 228 315 0 0 chrX 68786642 68786715 -108187425 + MER103 DNA DNA 3 75 -91 3773 287 73 50 chrX 68786833 68788175 -108185965 - L2 LINE L2 -671 2643 1256 840 246 62 0 chrX 68788175 68788386 -108185754 + MER58A DNA MER1_type 1 224 0 3773 287 73 50 chrX 68788386 68788656 -108185484 - L2 LINE L2 -2058 1256 994 629 342 71 42 chrX 68788684 68789235 -108184905 + L1M3d LINE L1 6 514 -5377 860 126 0 0 chrX 68789301 68789428 -108184712 + L1MA3 LINE L1 6177 6303 -2 190 313 37 22 chrX 68789533 68789667 -108184473 - L2 LINE L2 -2500 814 679 322 312 64 35 chrX 68789748 68789889 -108184251 + L3 LINE CR1 538 682 -895 252 268 0 28 chrX 68791615 68791686 -108182454 - 7SK RNA RNA -124 69 1 1457 185 40 7 chrX 68792393 68792696 -108181444 + L1PB4 LINE L1 5842 6154 -2 22 0 0 0 chrX 68792786 68792808 -108181332 + AT_rich Low_complexity Low_complexity 1 22 0 390 21 0 0 chrX 68794874 68794921 -108179219 + (CA)n Simple_repeat Simple_repeat 1 47 0 332 289 183 15 chrX 68795420 68795617 -108178523 - MIR SINE MIR -18 244 15 1855 216 68 5 chrX 68795623 68796062 -108178078 + MLT1C LTR MaLR 1 467 0 794 132 2 1 chrX 68796527 68796672 -108177468 + L1MA5A LINE L1 5917 6064 -233 313 45 0 197 chrX 68796672 68796712 -108177428 + MADE1 DNA Mariner 1 25 -55 2309 70 0 0 chrX 68796712 68797010 -108177130 - L1PA7 LINE L1 0 6154 5857 313 45 0 197 chrX 68797010 68797035 -108177105 + MADE1 DNA Mariner 25 53 -27 1203 88 18 106 chrX 68797037 68797133 -108177007 + L1MA5A LINE L1 6087 6153 -144 1852 154 3 0 chrX 68797133 68797419 -108176721 + AluSx SINE Alu 1 287 -25 1203 88 18 106 chrX 68797419 68797548 -108176592 + L1MA5A LINE L1 6153 6292 -5 2382 100 0 0 chrX 68797664 68797974 -108176166 + AluSg SINE Alu 1 310 0 744 311 73 9 chrX 68798030 68798563 -108175577 - L1ME4a LINE L1 -15 6106 5525 28 48 0 0 chrX 68798601 68798643 -108175497 + AT_rich Low_complexity Low_complexity 1 42 0 25295 131 14 79 chrX 68798674 68803659 -108170481 + L1P LINE L1 12 4672 -1474 1333 337 53 14 chrX 68803700 68804106 -108170034 + L1M4b LINE L1 930 1368 -6099 5029 32 0 0 chrX 68804106 68804706 -108169434 + L1PA4 LINE L1 5556 6155 0 1333 337 53 14 chrX 68804706 68804887 -108169253 + L1M4b LINE L1 1368 1540 -5927 18301 213 25 33 chrX 68805545 68806666 -108167474 + L1M4 LINE L1 12 1141 -6424 258 32 0 0 chrX 68806666 68806697 -108167443 + (CA)n Simple_repeat Simple_repeat 2 32 0 18301 213 25 33 chrX 68806697 68812039 -108162101 + L1M4 LINE L1 1141 5374 -2191 4096 153 14 9 chrX 68812053 68813416 -108160724 + L1MA1 LINE L1 5931 7301 -420 507 211 177 40 chrX 68813416 68813591 -108160549 - MER52A LTR ERV1 -1508 247 49 228 266 16 0 chrX 68813628 68813692 -108160448 + MER52A LTR ERV1 1 65 -1690 741 192 62 83 chrX 68813962 68814155 -108159985 + MLT2D LTR ERVL 164 352 -62 186 103 0 0 chrX 68814163 68814192 -108159948 + (TCTCCC)n Simple_repeat Simple_repeat 3 31 0 3604 243 30 37 chrX 68814215 68814590 -108159550 + L1M4 LINE L1 5448 5824 -1773 2477 86 17 6 chrX 68814590 68814941 -108159199 + L1PA7 LINE L1 5800 6154 0 3604 243 30 37 chrX 68814941 68816113 -108158027 + L1M4 LINE L1 5824 6986 -611 299 103 13 141 chrX 68816129 68816207 -108157933 - MADE1 DNA Mariner -12 68 1 694 241 47 5 chrX 68816213 68816404 -108157736 + L1M4 LINE L1 7029 7227 -370 32 0 0 0 chrX 68816411 68816443 -108157697 + AT_rich Low_complexity Low_complexity 1 32 0 5741 201 6 6 chrX 68816445 68818448 -108155692 - L1PA14 LINE L1 -4 6157 4135 1241 271 105 22 chrX 68818457 68819106 -108155034 - L1M4 LINE L1 -3128 3018 2316 603 245 27 0 chrX 68819266 68819454 -108154686 - L1M4 LINE L1 -3822 2324 2132 754 207 7 0 chrX 68819536 68819681 -108154459 - AluJb SINE Alu -3 309 164 3022 183 12 82 chrX 68819682 68820341 -108153799 - LTR8 LTR ERV1 0 691 88 1991 122 44 0 chrX 68820341 68820635 -108153505 + AluSc SINE Alu 1 307 -2 3022 183 12 82 chrX 68820635 68820718 -108153422 - LTR8 LTR ERV1 -603 88 1 7515 155 27 44 chrX 68820718 68823030 -108151110 - HUERS-P1 LTR ERV1 0 6409 2955 2264 114 0 0 chrX 68823030 68823336 -108150804 - AluSg SINE Alu -4 306 1 7515 155 27 44 chrX 68823336 68823936 -108150204 - HUERS-P1 LTR ERV1 -3454 2955 2347 2217 272 43 16 chrX 68823940 68824701 -108149439 - L1PA12 LINE L1 -4621 2960 2179 537 333 22 31 chrX 68824697 68824922 -108149218 - L1PA12 LINE L1 -6564 1010 788 * 236 160 40 0 chrX 68824933 68824983 -108149157 + L1MB5 LINE L1 6115 6166 -8 594 243 0 0 chrX 68825000 68825144 -108148996 + L1MC3 LINE L1 7479 7622 -163 32 43 0 0 chrX 68825316 68825362 -108148778 + AT_rich Low_complexity Low_complexity 1 46 0 369 243 0 0 chrX 68825367 68825437 -108148703 + L2 LINE L2 3244 3313 0 497 217 0 0 chrX 68826754 68826846 -108147294 + MER81 DNA DNA 8 99 -15 1676 142 96 34 chrX 68826999 68827173 -108146967 - THE1C LTR MaLR 0 375 213 216 0 0 0 chrX 68827173 68827197 -108146943 + (GA)n Simple_repeat Simple_repeat 2 25 0 1676 142 96 34 chrX 68827197 68827375 -108146765 - THE1C LTR MaLR -162 213 1 290 327 105 86 chrX 68827442 68827757 -108146383 + L2 LINE L2 2929 3249 -23 42033 40 21 3 chrX 68827891 68833951 -108140189 + L1PA3 LINE L1 1 6175 0 245 213 16 0 chrX 68834073 68834134 -108140006 - L1MD1 LINE L1 -13 6229 6168 2484 250 64 47 chrX 68834150 68834859 -108139281 - L1MD1 LINE L1 -661 5698 5002 617 234 0 0 chrX 68834859 68834983 -108139157 - FLAM_C SINE Alu -5 128 5 2484 250 64 47 chrX 68834983 68835522 -108138618 - L1MD1 LINE L1 -1357 5002 4474 1995 126 0 23 chrX 68835522 68835823 -108138317 + AluSg SINE Alu 1 294 -16 2484 250 64 47 chrX 68835823 68836313 -108137827 - L1MD1 LINE L1 -1885 4474 3921 1318 237 37 77 chrX 68836295 68836871 -108137269 + L1M4 LINE L1 2234 2781 -3365 * 4475 183 3 5 chrX 68836871 68837667 -108136473 - L1PA16 LINE L1 -18 6148 5351 1865 101 4 16 chrX 68837667 68837925 -108136215 + AluSq SINE Alu 49 303 -10 4475 183 3 5 chrX 68837925 68838482 -108135658 - L1PA16 LINE L1 -815 5351 4795 1318 237 37 77 chrX 68838482 68838580 -108135560 + L1M4 LINE L1 2781 2881 -3265 274 98 137 0 chrX 68838621 68838672 -108135468 - L1PA13 LINE L1 -136 6027 5970 * 950 77 8 0 chrX 68838671 68838801 -108135339 + L1PB1 LINE L1 5989 6119 -32 255 250 128 24 chrX 68838788 68838952 -108135188 + L1M4 LINE L1 2861 3041 -3105 * 3063 206 8 8 chrX 68838956 68839544 -108134596 - LTR69 LTR ERVL 0 588 1 999 192 77 0 chrX 68839556 68839776 -108134364 - AluJo SINE Alu 0 320 87 1898 278 48 13 chrX 68839795 68840656 -108133484 + L1M4 LINE L1 3065 3955 -2191 2832 190 20 24 chrX 68840892 68841530 -108132610 - L1MB5 LINE L1 -8 6166 5531 2242 113 0 0 chrX 68842136 68842438 -108131702 + AluSx SINE Alu 5 306 -6 7189 36 16 1 chrX 68843095 68844751 -108129389 + L1PA4 LINE L1 4518 6155 0 718 281 67 13 chrX 68844757 68844995 -108129145 + MIR SINE MIR 11 261 -1 183 42 0 0 chrX 68845409 68845433 -108128707 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 188 308 0 0 chrX 68846782 68846821 -108127319 - L2 LINE L2 -16 3297 3259 24 32 0 0 chrX 68848615 68848646 -108125494 + AT_rich Low_complexity Low_complexity 1 31 0 251 372 45 45 chrX 68848989 68849344 -108124796 - L2 LINE L2 -406 2908 2554 189 355 21 32 chrX 68849472 68849565 -108124575 - L2 LINE L2 -1001 2313 2222 23 0 0 0 chrX 68849861 68849884 -108124256 + AT_rich Low_complexity Low_complexity 1 23 0 413 277 21 0 chrX 68849920 68850061 -108124079 + GA-rich Low_complexity Low_complexity 1 144 0 244 263 13 40 chrX 68851315 68851391 -108122749 + L2 LINE L2 3220 3293 -20 240 35 0 0 chrX 68851397 68851426 -108122714 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 2961 257 62 42 chrX 68851616 68852898 -108121242 + L1M3e LINE L1 815 2144 -4893 2855 198 4 5 chrX 68852898 68853449 -108120691 + MER44D DNA MER2_type 1 605 0 2961 257 62 42 chrX 68853449 68853538 -108120602 + L1M3e LINE L1 2144 2230 -4807 1003 172 54 23 chrX 68853516 68853777 -108120363 + L1MA9 LINE L1 6028 6296 -810 * 1821 205 26 139 chrX 68853777 68854351 -108119789 + MLT2B3 LTR ERVL 1 500 -54 356 0 23 0 chrX 68854351 68854395 -108119745 + (CA)n Simple_repeat Simple_repeat 1 45 0 1821 205 26 139 chrX 68854395 68854445 -108119695 + MLT2B3 LTR ERVL 500 554 0 4146 173 35 40 chrX 68854445 68855421 -108118719 + L1MA9 LINE L1 6292 7262 -10 6816 257 112 30 chrX 68855473 68858881 -108115259 + L1M2b LINE L1 1 3483 -3725 1963 153 7 0 chrX 68858881 68859168 -108114972 + AluSx SINE Alu 1 289 -23 6816 257 112 30 chrX 68859168 68860306 -108113834 + L1M2b LINE L1 3483 4527 -2681 1577 163 206 0 chrX 68860306 68860475 -108113665 + MSTA LTR MaLR 1 134 -294 366 23 0 0 chrX 68860475 68860518 -108113622 + (TC)n Simple_repeat Simple_repeat 1 43 0 1577 163 206 0 chrX 68860518 68860703 -108113437 + MSTA LTR MaLR 134 428 0 8732 162 9 38 chrX 68860722 68862330 -108111810 + MSTA-int LTR MaLR 19 1580 0 1562 171 147 21 chrX 68862330 68862710 -108111430 + MSTA LTR MaLR 1 428 0 312 275 0 18 chrX 68862710 68862819 -108111321 + L1M2b LINE L1 4523 4629 -2579 268 109 85 30 chrX 68862891 68863056 -108111084 + (TATAG)n Simple_repeat Simple_repeat 1 174 0 214 159 37 65 chrX 68863062 68863169 -108110971 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 * 452 140 76 23 chrX 68863113 68863365 -108110775 + (TATAG)n Simple_repeat Simple_repeat 1 265 0 343 58 40 75 chrX 68863386 68863560 -108110580 + (TA)n Simple_repeat Simple_repeat 1 168 0 224 86 52 17 chrX 68863584 68863642 -108110498 + (TA)n Simple_repeat Simple_repeat 1 60 0 594 306 47 13 chrX 68863667 68863902 -108110238 + MIR SINE MIR 20 262 0 2667 242 82 11 chrX 68864098 68864464 -108109676 - L1MB4 LINE L1 0 6180 5841 180 111 0 0 chrX 68864464 68864491 -108109649 + (TG)n Simple_repeat Simple_repeat 2 28 0 2667 242 82 11 chrX 68864491 68865343 -108108797 - L1MB4 LINE L1 -339 5841 4868 1329 231 107 48 chrX 68865345 68866129 -108108011 + L1M4 LINE L1 1533 2362 -4022 558 252 0 0 chrX 68866196 68866331 -108107809 + FLAM_C SINE Alu 3 137 -6 979 290 32 2 chrX 68866339 68866749 -108107391 + L1M4 LINE L1 2396 2817 -3565 252 271 0 56 chrX 68866816 68866857 -108107283 + (TA)n Simple_repeat Simple_repeat 1 43 -58 1928 168 8 50 chrX 68866857 68867237 -108106903 + THE1B LTR MaLR 1 364 0 10698 113 16 12 chrX 68867237 68868809 -108105331 + THE1B-int LTR MaLR 1 1578 -2 2202 144 8 22 chrX 68868811 68869180 -108104960 + THE1B LTR MaLR 1 364 0 252 271 0 56 chrX 68869180 68869241 -108104899 + (TA)n Simple_repeat Simple_repeat 43 101 0 1312 213 70 27 chrX 68869284 68869331 -108104809 + MER2 DNA MER2_type 1 45 -300 2165 132 19 30 chrX 68869331 68869696 -108104444 + THE1B LTR MaLR 4 364 0 1312 213 70 27 chrX 68869696 68869867 -108104273 + MER2 DNA MER2_type 45 240 -105 2266 107 0 3 chrX 68869867 68870175 -108103965 - AluSg SINE Alu -3 307 1 1312 213 70 27 chrX 68870175 68870283 -108103857 + MER2 DNA MER2_type 240 342 -3 225 65 0 0 chrX 68870284 68870315 -108103825 + (TG)n Simple_repeat Simple_repeat 2 32 0 1371 258 40 0 chrX 68870370 68870723 -108103417 - MLT2D LTR ERVL -47 367 1 2093 197 108 4 chrX 68870723 68871225 -108102915 - ERVL-D LTR ERVL -7 5757 5204 1911 212 82 9 chrX 68871223 68871662 -108102478 - ERVL-D LTR ERVL -740 5024 4554 * 520 219 19 0 chrX 68871662 68871767 -108102373 - ERVL-D LTR ERVL -1324 4440 4334 990 266 35 14 chrX 68871767 68872053 -108102087 - MLT2D LTR ERVL -117 297 6 863 251 40 88 chrX 68872077 68872244 -108101896 + L1M4 LINE L1 2845 3019 -3363 1229 241 14 0 chrX 68872244 68872535 -108101605 + AluJb SINE Alu 1 295 -17 863 251 40 88 chrX 68872535 68872961 -108101179 + L1M4 LINE L1 3019 3399 -2983 2379 73 0 16 chrX 68872961 68873277 -108100863 + AluY SINE Alu 1 311 0 863 251 40 88 chrX 68873277 68873408 -108100732 + L1M4 LINE L1 3399 3535 -2847 * 978 140 0 117 chrX 68873407 68873629 -108100511 + L1M2 LINE L1 5492 5687 -613 589 267 45 0 chrX 68874713 68874934 -108099206 + L1M4 LINE L1 3525 3755 -2627 * 4024 112 0 0 chrX 68874933 68875532 -108098608 - L1PA8 LINE L1 -809 5337 4739 4456 85 3 5 chrX 68875533 68876146 -108097994 + L1PA8 LINE L1 5338 5949 -223 2002 222 21 0 chrX 68876155 68876574 -108097566 - MSTA LTR MaLR 0 428 1 1478 167 65 3 chrX 68876574 68876867 -108097273 - MSTA-int LTR MaLR 0 1651 1341 409 242 23 0 chrX 68876864 68876992 -108097148 + L1M4 LINE L1 4517 4647 -1735 * 1300 269 26 7 chrX 68877007 68877312 -108096828 + L1PA15 LINE L1 1255 1565 -5222 1952 229 130 32 chrX 68877312 68877972 -108096168 - MER50 LTR ERV1 0 734 10 14687 228 21 16 chrX 68877981 68882522 -108091618 + L1PA15 LINE L1 1565 6139 -677 2971 138 8 26 chrX 68883685 68884177 -108089963 + L1PA15 LINE L1 6155 6637 -179 2159 166 30 10 chrX 68884177 68884563 -108089577 + L1PA15 LINE L1 6404 6814 -2 407 225 64 68 chrX 68884640 68884797 -108089343 + FLAM_C SINE Alu 1 121 -12 1454 239 155 56 chrX 68884822 68885539 -108088601 + L1M4 LINE L1 4678 5465 -917 1609 205 85 25 chrX 68885540 68885906 -108088234 + MLT1B LTR MaLR 3 390 0 2506 238 30 30 chrX 68885908 68886705 -108087435 + MLT1B-int LTR MaLR 2 887 -484 2306 258 48 26 chrX 68886808 68887764 -108086376 - L1M4 LINE L1 -1554 4592 3616 * 4499 33 0 0 chrX 68887760 68888304 -108085836 - L1HS LINE L1 -964 5182 4639 * 7916 10 0 0 chrX 68888297 68889263 -108084877 + L1HS LINE L1 5189 6154 -1 568 191 37 0 chrX 68889263 68889399 -108084741 - L1M4 LINE L1 -2521 3625 3485 2373 93 3 0 chrX 68889415 68889737 -108084403 - L1PB1 LINE L1 -44 6107 5785 373 140 0 44 chrX 68889746 68889860 -108084280 + (TA)n Simple_repeat Simple_repeat 1 109 0 8794 197 40 5 chrX 68889860 68891167 -108082973 - L1PB1 LINE L1 -359 5792 4533 231 36 0 0 chrX 68891167 68891195 -108082945 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 8794 197 40 5 chrX 68891195 68892568 -108081572 - L1PB1 LINE L1 -1618 4533 3011 254 299 33 14 chrX 68892566 68892777 -108081363 - L1M4 LINE L1 -2638 3508 3294 * 1687 205 10 12 chrX 68892787 68893187 -108080953 - L1MB3 LINE L1 -7 6674 6276 780 266 26 18 chrX 68893187 68893509 -108080631 + MLT1B LTR MaLR 1 382 -8 1905 216 100 18 chrX 68893525 68894320 -108079820 - L1MB3 LINE L1 -399 6279 5434 990 30 15 8 chrX 68894328 68894459 -108079681 - AluY SINE Alu -1 310 179 6732 264 51 14 chrX 68894459 68896993 -108077147 - L1MB3 LINE L1 -1228 5416 2786 822 299 103 12 chrX 68896993 68897418 -108076722 + MLT1C LTR MaLR 1 464 -3 6732 264 51 14 chrX 68897418 68897446 -108076694 - L1MB3 LINE L1 -3858 2786 2760 637 257 40 87 chrX 68897458 68897758 -108076382 + MLT1A1 LTR MaLR 1 286 -79 279 0 0 0 chrX 68897758 68897789 -108076351 + (TA)n Simple_repeat Simple_repeat 1 31 0 573 86 53 46 chrX 68897835 68898138 -108076002 + (TA)n Simple_repeat Simple_repeat 1 305 0 264 122 0 0 chrX 68898180 68898221 -108075919 + (CA)n Simple_repeat Simple_repeat 2 42 0 262 136 91 0 chrX 68898236 68898280 -108075860 + MLT1A1 LTR MaLR 347 394 -2 3416 250 49 17 chrX 68898296 68899914 -108074226 - L1MB3 LINE L1 -3907 2739 978 193 310 42 28 chrX 68900036 68900107 -108074033 - L2 LINE L2 -199 3073 3002 400 311 100 56 chrX 68900188 68900847 -108073293 - L1MB3 LINE L1 -5852 690 3 228 278 0 56 chrX 68900998 68901070 -108073070 - L2 LINE L2 -235 3078 3011 409 277 54 0 chrX 68901160 68901272 -108072868 - L2 LINE L2 -5 3308 3191 321 242 11 53 chrX 68901283 68901378 -108072762 - MIR SINE MIR -91 171 81 238 385 12 0 chrX 68902321 68902404 -108071736 + L1M3a LINE L1 302 385 -5570 1822 266 52 16 chrX 68902465 68903532 -108070608 + L1M3a LINE L1 797 1877 -4158 1235 133 0 0 chrX 68903599 68903779 -108070361 + L1PA7 LINE L1 1 180 -6281 25923 98 8 3 chrX 68903785 68908367 -108065773 + L1PA7 LINE L1 1862 6464 -5 294 303 119 22 chrX 68908406 68908711 -108065429 + L1MA7 LINE L1 3180 3508 -4059 * 2038 156 43 0 chrX 68908707 68909079 -108065061 + L1P LINE L1 4807 5194 -952 * 2399 189 27 33 chrX 68909073 68909785 -108064355 + L1MA7 LINE L1 4412 5126 -2584 4764 38 3 0 chrX 68909785 68910358 -108063782 + L1PA3 LINE L1 5581 6155 0 2399 189 27 33 chrX 68910358 68911983 -108062157 + L1MA7 LINE L1 5126 6833 -877 1437 54 36 54 chrX 68911983 68912201 -108061939 + L1PA7 LINE L1 5937 6153 -1 2399 189 27 33 chrX 68912201 68913073 -108061067 + L1MA7 LINE L1 6833 7708 -2 22 35 0 0 chrX 68913073 68913102 -108061038 + AT_rich Low_complexity Low_complexity 1 29 0 375 347 145 33 chrX 68913269 68913753 -108060387 - L2 LINE L2 -576 2738 2201 21 0 0 0 chrX 68913754 68913775 -108060365 + AT_rich Low_complexity Low_complexity 1 21 0 2271 145 14 0 chrX 68913817 68914176 -108059964 + THE1B LTR MaLR 1 364 0 612 283 107 66 chrX 68914829 68915362 -108058778 + MLT1H1 LTR MaLR 1 555 0 319 239 80 0 chrX 68915396 68915484 -108058656 - MIR SINE MIR -1 261 167 222 231 58 0 chrX 68915663 68915715 -108058425 + L2 LINE L2 3203 3257 -15 317 285 2 2 chrX 68915719 68915804 -108058336 - MIR SINE MIR -62 146 64 601 311 67 18 chrX 68916438 68916663 -108057477 + MIR SINE MIR 23 258 -4 198 0 0 0 chrX 68917216 68917238 -108056902 + (TC)n Simple_repeat Simple_repeat 1 22 0 315 386 34 39 chrX 68918025 68918258 -108055882 - MLT1I LTR MaLR -110 299 68 329 349 112 13 chrX 68918259 68918411 -108055729 - MIR SINE MIR -66 196 30 27 73 0 0 chrX 68918652 68918707 -108055433 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chrX 68919378 68919403 -108054737 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chrX 68920279 68920315 -108053825 + AT_rich Low_complexity Low_complexity 1 36 0 586 83 0 0 chrX 68920456 68920540 -108053600 + L1MA2 LINE L1 6221 6304 0 23 54 0 0 chrX 68920746 68920783 -108053357 + AT_rich Low_complexity Low_complexity 1 37 0 305 349 82 40 chrX 68920908 68921273 -108052867 + L2 LINE L2 2687 3069 -203 367 327 28 0 chrX 68921551 68921658 -108052482 - L2 LINE L2 0 3313 3204 26 50 0 0 chrX 68922425 68922465 -108051675 + AT_rich Low_complexity Low_complexity 1 40 0 976 210 57 109 chrX 68923221 68923607 -108050533 + MLT1A2 LTR MaLR 1 366 -8 1238 144 0 0 chrX 68923845 68924040 -108050100 - L1PA15 LINE L1 -3 6162 5968 5891 86 0 43 chrX 68924048 68924929 -108049211 - L1PA8 LINE L1 0 6172 5330 9125 239 37 23 chrX 68924931 68926061 -108048079 - L1PA13 LINE L1 -3211 3586 2473 2125 79 3 38 chrX 68926061 68926410 -108047730 + AluY SINE Alu 1 339 0 9125 239 37 23 chrX 68926410 68928809 -108045331 - L1PA13 LINE L1 -4324 2473 1 11992 122 3 14 chrX 68928885 68931631 -108042509 - L1PA8 LINE L1 -7 6165 3449 13510 159 27 104 chrX 68931641 68935163 -108038977 - L1PA8 LINE L1 -2892 3254 7 451 320 67 5 chrX 68936296 68936490 -108037650 - MIR SINE MIR -50 212 7 180 324 14 0 chrX 68936933 68937007 -108037133 + MIR SINE MIR 158 232 -30 206 278 0 0 chrX 68937040 68937094 -108037046 + MIR SINE MIR 96 149 -113 21 0 0 0 chrX 68937168 68937189 -108036951 + AT_rich Low_complexity Low_complexity 1 21 0 350 235 154 52 chrX 68937278 68937414 -108036726 - MIR3 SINE MIR -1 207 58 2075 159 2 48 chrX 68938640 68938778 -108035362 - L1PA15 LINE L1 -1 6164 6021 1906 115 18 11 chrX 68938778 68939095 -108035045 - AluSc SINE Alu 0 309 1 2075 159 2 48 chrX 68939095 68939371 -108034769 - L1PA15 LINE L1 -144 6021 5769 3347 175 39 12 chrX 68939394 68940079 -108034061 - L1MA2 LINE L1 -4 6300 5597 11322 264 44 56 chrX 68940139 68943338 -108030802 - L1PA15 LINE L1 -1 7602 4368 4382 34 8 0 chrX 68943338 68943869 -108030271 - L1PA4 LINE L1 0 6155 5621 11322 264 44 56 chrX 68943869 68943960 -108030180 - L1PA15 LINE L1 -3235 4368 4277 1810 148 7 14 chrX 68943960 68944257 -108029883 - AluSq SINE Alu -14 299 5 11322 264 44 56 chrX 68944257 68945428 -108028712 - L1PA15 LINE L1 -3326 4277 3094 1516 43 0 0 chrX 68945428 68945605 -108028535 + L1PA4 LINE L1 5969 6155 0 11322 264 44 56 chrX 68945605 68946411 -108027729 - L1PA15 LINE L1 -4509 3094 2280 314 44 0 22 chrX 68946411 68946456 -108027684 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 11322 264 44 56 chrX 68946456 68948250 -108025890 - L1PA15 LINE L1 -5323 2280 1 2090 48 17 62 chrX 68949579 68949869 -108024271 + AluY SINE Alu 1 277 -34 802 286 14 0 chrX 68949910 68950120 -108024020 - MIR SINE MIR 0 262 50 280 259 0 0 chrX 68950374 68950428 -108023712 - L2 LINE L2 -26 3246 3193 248 275 62 88 chrX 68950494 68950654 -108023486 + L2 LINE L2 3117 3272 0 2252 108 3 0 chrX 68951075 68951372 -108022768 - AluSq SINE Alu -15 298 1 6117 211 14 50 chrX 68952118 68954448 -108019692 + L1PA15 LINE L1 3859 6165 0 191 356 53 8 chrX 68954800 68954932 -108019208 + L3b LINE CR1 1247 1384 -199 25 31 0 0 chrX 68955318 68955350 -108018790 + AT_rich Low_complexity Low_complexity 1 32 0 215 303 254 0 chrX 68955738 68955860 -108018280 + L2 LINE L2 2609 2761 -553 3018 182 18 58 chrX 68956593 68957303 -108016837 - L1MB1 LINE L1 -2 5990 5309 * 4700 157 12 11 chrX 68957299 68958104 -108016036 - L1PA15 LINE L1 -8 6157 5352 * 9493 231 25 55 chrX 68958080 68961473 -108012667 - L1MB1 LINE L1 -666 5326 2034 25 51 0 0 chrX 68961498 68961537 -108012603 + AT_rich Low_complexity Low_complexity 1 39 0 505 215 0 44 chrX 68961537 68961672 -108012468 - L1MB1 LINE L1 -3947 2023 1895 1757 273 37 40 chrX 68961788 68961975 -108012165 - L1MB1 LINE L1 -4300 1670 1484 252 86 0 0 chrX 68961975 68962010 -108012130 + (TG)n Simple_repeat Simple_repeat 2 36 0 1757 273 37 40 chrX 68962010 68962298 -108011842 - L1MB1 LINE L1 -4486 1484 1197 2487 24 42 0 chrX 68962298 68962586 -108011554 - AluY SINE Alu -11 300 1 1757 273 37 40 chrX 68962586 68963051 -108011089 - L1MB1 LINE L1 -4773 1197 659 1243 325 45 14 chrX 68963317 68963810 -108010330 - L1MB1 LINE L1 -5379 512 5 211 279 89 0 chrX 68963816 68963895 -108010245 + L2 LINE L2 1750 1835 -1479 484 17 0 0 chrX 68963949 68964007 -108010133 + L1PA6 LINE L1 6091 6148 -6 301 313 60 33 chrX 68964084 68964234 -108009906 - MIR SINE MIR -105 157 4 232 378 75 45 chrX 68964238 68964743 -108009397 + L2 LINE L2 2128 2647 -667 361 236 67 41 chrX 68965004 68965199 -108008941 + MER69 DNA AcHobo 2158 2357 -169 1219 264 32 75 chrX 68965314 68965821 -108008319 - MER77 LTR ERV1 -39 566 82 21 57 0 0 chrX 68966004 68966039 -108008101 + AT_rich Low_complexity Low_complexity 1 35 0 267 307 29 78 chrX 68966836 68967041 -108007099 - L2 LINE L2 -273 2999 2805 677 248 0 0 chrX 68967541 68967686 -108006454 + MLT1A1 LTR MaLR 8 152 -213 1104 8 0 0 chrX 68967690 68967816 -108006324 + L1PA2 LINE L1 6030 6155 0 264 120 0 0 chrX 68967820 68967870 -108006270 + (A)n Simple_repeat Simple_repeat 1 50 0 777 192 60 0 chrX 68967916 68968067 -108006073 + MLT1A1 LTR MaLR 194 353 -12 2034 227 56 0 chrX 68968078 68968509 -108005631 + MLT1A1-int LTR MaLR 1 455 -1280 2532 270 31 101 chrX 68968658 68969638 -108004502 + MLT1A1-int LTR MaLR 475 1385 -350 1076 314 31 39 chrX 68969644 68970157 -108003983 + L1MA7 LINE L1 1 509 -5772 11797 221 58 29 chrX 68970179 68975585 -107998555 + L1MA7 LINE L1 671 6225 -270 617 201 16 5 chrX 68975660 68975675 -107998465 + L1MA7 LINE L1 6350 6363 -132 2529 111 11 6 chrX 68975675 68976037 -107998103 + THE1B LTR MaLR 1 364 0 617 201 16 5 chrX 68976037 68976174 -107997966 + L1MA7 LINE L1 6363 6492 -3 251 232 0 95 chrX 68976160 68976255 -107997885 + MLT1-int LTR MaLR 1014 1099 -272 * 774 335 72 24 chrX 68976300 68976718 -107997422 + LTR33 LTR ERVL 74 511 -10 208 255 32 45 chrX 68977183 68977340 -107996800 + A-rich Low_complexity Low_complexity 2 156 0 704 250 7 0 chrX 68977504 68977648 -107996492 + FRAM SINE Alu 1 144 -32 33 43 0 0 chrX 68977654 68977701 -107996439 + AT_rich Low_complexity Low_complexity 1 47 0 1448 293 71 42 chrX 68977943 68978000 -107996140 + L1M4 LINE L1 18 72 -6470 318 26 0 0 chrX 68978000 68978039 -107996101 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1448 293 71 42 chrX 68978039 68978695 -107995445 + L1M4 LINE L1 72 752 -5790 4855 181 8 6 chrX 68978696 68979644 -107994496 + L1MA4A LINE L1 5352 6301 -2 1453 180 83 64 chrX 68979651 68979904 -107994236 + L1P5 LINE L1 4935 5182 -969 3761 168 32 27 chrX 68979904 68980685 -107993455 + LTR1 LTR ERV1 1 785 0 1453 180 83 64 chrX 68980685 68980737 -107993403 + L1P5 LINE L1 5182 5232 -919 6125 165 39 5 chrX 68980737 68981926 -107992214 - Tigger3b DNA MER2_type 0 1231 3 1453 180 83 64 chrX 68981926 68982132 -107992008 + L1P5 LINE L1 5232 5454 -697 685 330 0 5 chrX 68982162 68982377 -107991763 - LTR33 LTR ERVL -305 216 3 5900 72 18 0 chrX 68983225 68984008 -107990132 - L1PA7 LINE L1 -6 6148 5352 1293 210 95 17 chrX 68984019 68984286 -107989854 + L1M4 LINE L1 5223 5531 -653 1809 81 132 0 chrX 68984286 68984559 -107989581 + AluY SINE Alu 1 309 -2 1293 210 95 17 chrX 68984559 68984678 -107989462 + L1M4 LINE L1 5531 5639 -545 4319 26 0 0 chrX 68984694 68985197 -107988943 - L1PA3 LINE L1 0 6155 5653 14352 47 0 0 chrX 68985197 68986996 -107987144 + L1P LINE L1 1187 2985 -3161 * 30182 127 52 16 chrX 68986993 68992169 -107981971 - L1P LINE L1 -781 5365 2 1013 199 21 25 chrX 68992977 68993218 -107980922 + L1 LINE L1 4095 4334 -1812 275 286 50 25 chrX 68995275 68995394 -107978746 - MIR3 SINE MIR 0 208 87 1169 341 9 20 chrX 68995479 68995936 -107978204 + L1M3a LINE L1 1 452 -5503 303 263 59 42 chrX 68996346 68996464 -107977676 - L1M4b LINE L1 -6710 149 30 241 200 0 17 chrX 68996584 68996644 -107977496 - Charlie7 DNA MER1_type -156 2456 2398 7257 228 77 86 chrX 68996689 69001181 -107972959 + L1MA4A LINE L1 13 4544 -2304 1880 174 129 5 chrX 69001181 69001560 -107972580 + MSTA LTR MaLR 1 426 -2 7942 202 43 3 chrX 69001562 69003150 -107970990 + MSTA-int LTR MaLR 1 1651 0 1819 164 156 8 chrX 69003150 69003523 -107970617 + MSTA LTR MaLR 1 428 0 7257 228 77 86 chrX 69003523 69003613 -107970527 + L1MA4A LINE L1 4543 4563 -2285 4310 201 52 11 chrX 69003605 69004599 -107969541 + L1MA4A LINE L1 5966 7000 -5 * 1353 277 52 66 chrX 69004628 69005486 -107968654 - Charlie7 DNA MER1_type -1707 905 60 4100 163 40 4 chrX 69005534 69006535 -107967605 - L1 LINE L1 -3662 3903 2868 1317 249 84 15 chrX 69006536 69006870 -107967270 + LTR18A LTR ERVL 1 357 0 14352 153 8 6 chrX 69006882 69009355 -107964785 + HERVL18 LTR ERVL 7 2552 -3495 2222 114 61 14 chrX 69009355 69009715 -107964425 + MER51B LTR ERV1 1 377 0 3747 163 31 30 chrX 69009715 69011130 -107963010 + MER51B-int LTR ERV1 1 1495 -6321 245 208 0 0 chrX 69011146 69011194 -107962946 + MER4A LTR ERV1 51 98 -566 666 188 26 78 chrX 69011236 69011390 -107962750 + MER4A LTR ERV1 372 517 -147 8347 109 74 5 chrX 69011394 69012829 -107961311 + MER51B-int LTR ERV1 1794 3327 -4489 3683 110 11 8 chrX 69012810 69013835 -107960305 + MER51B-int LTR ERV1 1482 2647 -2570 * 9851 149 60 41 chrX 69013832 69016012 -107958128 + MER51B-int LTR ERV1 5410 7813 -3 2424 99 68 0 chrX 69016017 69016370 -107957770 + MER51B LTR ERV1 1 377 0 13870 151 28 7 chrX 69016370 69018532 -107955608 + HERVL18 LTR ERVL 2549 4757 -1290 2011 161 13 0 chrX 69018530 69018840 -107955300 - HERVL18 LTR ERVL -947 5100 4787 * 2555 210 48 12 chrX 69018895 69019494 -107954646 + L1MD2 LINE L1 5680 6300 -59 1737 213 39 37 chrX 69019582 69019990 -107954150 + LTR2 LTR ERV1 41 449 0 22 0 0 0 chrX 69020400 69020422 -107953718 + AT_rich Low_complexity Low_complexity 1 22 0 1086 121 0 0 chrX 69020422 69020571 -107953569 - AluSg/x SINE Alu -26 286 138 373 293 172 9 chrX 69020576 69020791 -107953349 + L1MC4a LINE L1 5741 5990 -1818 248 93 23 0 chrX 69020889 69020932 -107953208 - L1MA8 LINE L1 -25 6266 6223 194 243 168 19 chrX 69021109 69021216 -107952924 + MIR SINE MIR 78 200 -62 606 242 11 45 chrX 69021281 69021459 -107952681 + MLT1A1 LTR MaLR 6 177 -188 203 114 57 0 chrX 69021462 69021497 -107952643 + C-rich Low_complexity Low_complexity 4 40 0 718 219 66 25 chrX 69021497 69021508 -107952632 + MLT1A1 LTR MaLR 162 171 -194 1151 53 29 6 chrX 69021508 69021679 -107952461 + (TTTC)n Simple_repeat Simple_repeat 1 175 0 730 93 0 0 chrX 69021681 69021778 -107952362 - L1PA7 LINE L1 -13 6141 6045 718 219 66 25 chrX 69021778 69021959 -107952181 + MLT1A1 LTR MaLR 171 365 0 7333 36 2 2 chrX 69022522 69023754 -107950386 - L1PA4 LINE L1 -1 6154 4922 6037 42 1 0 chrX 69023754 69024500 -107949640 + L1PA4 LINE L1 4164 4910 -1236 28 29 0 0 chrX 69024599 69024634 -107949506 + AT_rich Low_complexity Low_complexity 1 35 0 8361 188 74 10 chrX 69024817 69027897 -107946243 - L1MA4A LINE L1 -6 6999 3709 10500 238 19 12 chrX 69027900 69030723 -107943417 - L1MA4A LINE L1 -3482 3366 522 2160 156 13 5 chrX 69030723 69031095 -107943045 + THE1C LTR MaLR 1 375 0 8999 148 3 69 chrX 69031095 69031630 -107942510 + THE1C-int LTR MaLR 1 570 -1010 2157 122 3 0 chrX 69031630 69031933 -107942207 + AluSx SINE Alu 1 304 -8 8999 148 3 69 chrX 69031933 69033088 -107941052 + THE1C-int LTR MaLR 570 1580 0 2400 215 42 10 chrX 69033068 69033088 -107941052 - L1MA4A LINE L1 -6303 546 528 * 2622 108 8 0 chrX 69033088 69033460 -107940680 + THE1C LTR MaLR 1 375 0 2400 215 42 10 chrX 69033460 69033959 -107940181 - L1MA4A LINE L1 -6321 528 10 312 309 16 0 chrX 69034012 69034135 -107940005 + L1ME4a LINE L1 5594 5718 -403 379 258 103 86 chrX 69034173 69034464 -107939676 + L1ME4a LINE L1 5826 6121 0 243 181 34 34 chrX 69036537 69036714 -107937426 + (TA)n Simple_repeat Simple_repeat 1 177 0 23 0 0 0 chrX 69036721 69036744 -107937396 + AT_rich Low_complexity Low_complexity 1 23 0 252 278 14 14 chrX 69036855 69036927 -107937213 - MIR SINE MIR -17 245 174 760 143 8 15 chrX 69036955 69037088 -107937052 - AluJb SINE Alu -178 134 3 201 74 0 0 chrX 69037148 69037175 -107936965 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 207 342 0 66 chrX 69037179 69037255 -107936885 - MIR SINE MIR -180 82 12 559 211 58 0 chrX 69038501 69038672 -107935468 - L1MDa LINE L1 -3980 2560 2380 894 227 82 26 chrX 69038763 69038845 -107935295 + L1MDa LINE L1 1596 1672 -4868 1165 273 11 24 chrX 69038845 69039215 -107934925 - MLT1A1 LTR MaLR 0 365 1 894 227 82 26 chrX 69039215 69039401 -107934739 + L1MDa LINE L1 1672 1879 -4661 1038 244 16 4 chrX 69039406 69039648 -107934492 - L1MDa LINE L1 -6278 262 18 246 364 23 0 chrX 69040110 69040198 -107933942 + MIR SINE MIR 40 129 -79 30 69 0 0 chrX 69040365 69040423 -107933717 + AT_rich Low_complexity Low_complexity 1 58 0 425 321 60 46 chrX 69040433 69040735 -107933405 - L2 LINE L2 0 3313 3008 21 0 0 0 chrX 69041737 69041758 -107932382 + AT_rich Low_complexity Low_complexity 1 21 0 287 349 26 26 chrX 69041782 69041934 -107932206 - MIR SINE MIR -61 201 50 275 301 59 29 chrX 69041969 69042105 -107932035 + MER5B DNA MER1_type 2 141 -37 354 284 84 65 chrX 69042105 69042429 -107931711 + L1MC4 LINE L1 7284 7617 -425 2363 110 0 0 chrX 69042429 69042739 -107931401 + AluSg SINE Alu 1 310 0 354 284 84 65 chrX 69042739 69042770 -107931370 + L1MC4 LINE L1 7617 7646 -396 2042 254 37 23 chrX 69043435 69044126 -107930014 - LTR27 LTR ERV1 0 1253 3 1362 116 74 9 chrX 69044261 69044477 -107929663 + MER30 DNA MER1_type 1 230 0 2164 227 31 13 chrX 69044527 69045136 -107929004 - MER67C LTR ERV1 -18 692 1 397 408 13 13 chrX 69045205 69045438 -107928702 - MIR SINE MIR -2 260 28 1868 123 9 22 chrX 69045513 69045863 -107928277 - MER4A LTR ERV1 0 664 261 647 131 0 10 chrX 69045863 69045962 -107928178 - MER4A LTR ERV1 -566 98 1 377 234 43 14 chrX 69046346 69046487 -107927653 - L1ME4a LINE L1 -11 6110 5966 312 299 239 6 chrX 69047342 69047509 -107926631 - MIR SINE MIR -55 207 2 229 122 24 0 chrX 69047887 69047928 -107926212 - MIR SINE MIR -147 115 74 285 275 0 0 chrX 69049002 69049093 -107925047 + MER113 DNA MER1_type? 1 91 -430 11512 179 50 2 chrX 69049440 69051517 -107922623 + L1M1 LINE L1 716 2891 -4674 312 244 0 0 chrX 69051532 69051618 -107922522 + (TA)n Simple_repeat Simple_repeat 2 87 0 13269 111 7 1 chrX 69051618 69054374 -107919766 - L1PA8 LINE L1 -33 6139 3369 12410 194 28 4 chrX 69054374 69057632 -107916508 + L1M1 LINE L1 3902 7227 -496 1790 258 40 54 chrX 69057643 69058472 -107915668 + L1M4 LINE L1 4552 5368 -778 269 274 217 19 chrX 69060859 69060965 -107913175 - MIR SINE MIR -66 142 16 374 306 210 18 chrX 69061404 69061685 -107912455 - LTR16B LTR ERVL -15 449 115 212 192 39 39 chrX 69062673 69062725 -107911415 - L2 LINE L2 0 3313 3262 247 200 57 14 chrX 69063911 69063981 -107910159 + MIR SINE MIR 97 169 -93 33 25 0 0 chrX 69063981 69064021 -107910119 + AT_rich Low_complexity Low_complexity 1 40 0 1528 285 41 12 chrX 69064054 69064713 -107909427 - L1M4 LINE L1 -799 5347 4670 321 26 0 0 chrX 69064835 69064873 -107909267 + (TG)n Simple_repeat Simple_repeat 1 38 0 350 253 0 0 chrX 69064873 69064948 -107909192 - FRAM SINE Alu -23 143 69 298 242 58 0 chrX 69064948 69065068 -107909072 + L1MB8 LINE L1 2841 2967 -3179 3607 158 25 7 chrX 69065074 69065768 -107908372 - L1MA4 LINE L1 -1387 4759 4054 4761 198 15 10 chrX 69065773 69067293 -107906847 + L1MA4 LINE L1 4766 6294 -6 4095 282 66 25 chrX 69067317 69069550 -107904590 + L1MB8 LINE L1 2963 5286 -860 7889 128 3 3 chrX 69069841 69070978 -107903162 + THE1A-int LTR MaLR 443 1580 0 2549 110 0 0 chrX 69070978 69071332 -107902808 + THE1A LTR MaLR 1 354 -1 2841 201 44 38 chrX 69071333 69072080 -107902060 + L1MA9 LINE L1 5561 6312 0 * 3153 242 39 14 chrX 69072074 69072947 -107901193 + L1MB8 LINE L1 5272 6166 -12 2174 80 0 26 chrX 69073007 69073309 -107900831 - AluY SINE Alu -15 296 3 470 317 20 45 chrX 69073630 69073829 -107900311 + MIR SINE MIR 13 206 -56 201 74 0 0 chrX 69075602 69075629 -107898511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1882 148 16 60 chrX 69075631 69075817 -107898323 - L1PB1 LINE L1 -7 6144 5951 2158 91 28 0 chrX 69075817 69076103 -107898037 - AluSq SINE Alu -19 294 1 1882 148 16 60 chrX 69076103 69076283 -107897857 - L1PB1 LINE L1 -200 5951 5793 234 0 0 0 chrX 69076283 69076309 -107897831 + (TG)n Simple_repeat Simple_repeat 2 27 0 1882 148 16 60 chrX 69076309 69076326 -107897814 - L1PB1 LINE L1 -358 5793 5777 305 208 8 108 chrX 69076349 69076469 -107897671 - L1MC4 LINE L1 -1339 6703 6596 230 148 34 47 chrX 69076497 69076646 -107897494 + (TATAA)n Simple_repeat Simple_repeat 2 148 0 24 0 0 0 chrX 69076705 69076729 -107897411 + AT_rich Low_complexity Low_complexity 1 24 0 11432 257 33 10 chrX 69076729 69077977 -107896163 - L1PA16 LINE L1 -22 6795 5577 2031 134 13 0 chrX 69077977 69078283 -107895857 - AluSx SINE Alu -2 310 1 11432 257 33 10 chrX 69078283 69080781 -107893359 - L1PA16 LINE L1 -1240 5577 2847 2337 84 7 0 chrX 69080781 69081078 -107893062 - AluY SINE Alu -12 299 1 11432 257 33 10 chrX 69081078 69082608 -107891532 - L1PA16 LINE L1 -3970 2847 1354 25 0 0 0 chrX 69083207 69083232 -107890908 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 69083313 69083341 -107890799 + AT_rich Low_complexity Low_complexity 1 28 0 615 347 28 4 chrX 69084719 69084970 -107889170 - MIR SINE MIR -1 261 5 890 193 12 0 chrX 69085118 69085279 -107888861 + FAM SINE Alu 2 164 -11 188 86 29 0 chrX 69085400 69085435 -107888705 + (TA)n Simple_repeat Simple_repeat 1 36 0 204 97 0 0 chrX 69085501 69085532 -107888608 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 423 275 50 0 chrX 69085550 69085670 -107888470 + L2 LINE L2 3182 3307 -6 480 281 100 27 chrX 69085670 69086079 -107888061 + L1MC4a LINE L1 5334 5791 -330 847 224 102 14 chrX 69086080 69086161 -107887979 - MER33 DNA MER1_type -2261 324 252 2128 121 0 3 chrX 69086161 69086475 -107887665 + AluSq SINE Alu 1 313 0 847 224 102 14 chrX 69086475 69086688 -107887452 - MER33 DNA MER1_type -2333 252 4 299 267 69 23 chrX 69086700 69086831 -107887309 + L1MC4a LINE L1 5793 5929 -1879 183 114 0 0 chrX 69087565 69087600 -107886540 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 220 356 46 0 chrX 69089382 69089469 -107884671 - MER5B DNA MER1_type -87 91 1 23 36 0 54 chrX 69089823 69089879 -107884261 + AT_rich Low_complexity Low_complexity 1 53 0 4261 231 82 7 chrX 69089895 69091145 -107882995 - L1 LINE L1 -986 5160 3817 398 304 14 0 chrX 69091163 69091311 -107882829 + L1M4c LINE L1 1466 1615 -4769 810 244 117 35 chrX 69091312 69091650 -107882490 + L1M1 LINE L1 2922 3231 -4334 5710 125 3 0 chrX 69091650 69093167 -107880973 + L1PA13 LINE L1 4627 6157 -6 810 244 117 35 chrX 69093167 69093644 -107880496 + L1M1 LINE L1 3231 3805 -3760 2917 261 37 15 chrX 69093662 69094567 -107879573 + L1M1 LINE L1 3946 4877 -2688 2185 114 7 0 chrX 69094567 69094874 -107879266 + AluSx SINE Alu 1 309 -3 2917 261 37 15 chrX 69094874 69095007 -107879133 + L1M1 LINE L1 4877 5006 -2559 312 180 22 11 chrX 69095007 69095096 -107879044 + CT-rich Low_complexity Low_complexity 3 92 0 3740 235 21 30 chrX 69095096 69095578 -107878562 - L1MA9 LINE L1 -38 6274 5789 261 0 0 0 chrX 69095578 69095607 -107878533 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 375 41 0 0 chrX 69095606 69095655 -107878485 + (TG)n Simple_repeat Simple_repeat 2 50 0 3740 235 21 30 chrX 69095607 69097014 -107877126 - L1MA9 LINE L1 -523 5789 4445 793 167 40 11 chrX 69097014 69097290 -107876850 - MER4B LTR ERV1 0 610 261 547 155 21 10 chrX 69097290 69097387 -107876753 - MER4A LTR ERV1 -566 98 1 14308 141 83 53 chrX 69097389 69101634 -107872506 - MER4A-int LTR ERV1 0 6598 782 1515 136 121 12 chrX 69101653 69101910 -107872230 + AluY SINE Alu 4 288 -23 275 316 34 51 chrX 69102030 69102147 -107871993 - MER4A-int LTR ERV1 -6270 488 374 1455 178 32 40 chrX 69102149 69102288 -107871852 - MER4-int LTR ERV1 -5906 692 553 228 67 0 0 chrX 69102288 69102318 -107871822 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1455 178 32 40 chrX 69102318 69102622 -107871518 - MER4-int LTR ERV1 -6045 553 210 4168 276 105 54 chrX 69102628 69103438 -107870702 - MLT1A1-int LTR MaLR 0 1735 968 2134 164 23 0 chrX 69103438 69103792 -107870348 + THE1B LTR MaLR 1 362 -2 9614 149 29 4 chrX 69103794 69105335 -107868805 + THE1B-int LTR MaLR 1 1580 0 2247 166 6 0 chrX 69105335 69105697 -107868443 + THE1B LTR MaLR 1 364 0 4168 276 105 54 chrX 69105697 69106531 -107867609 - MLT1A1-int LTR MaLR -766 969 3 730 244 154 59 chrX 69106539 69106863 -107867277 - MLT1A1 LTR MaLR -10 355 1 4842 260 80 14 chrX 69106863 69108828 -107865312 - L1MA9 LINE L1 -1765 4381 2286 864 247 4 69 chrX 69108831 69109078 -107865062 + MLT1A1 LTR MaLR 1 231 -134 577 272 103 65 chrX 69109101 69109391 -107864749 + MLT-int LTR MaLR 908 1208 -527 * 5971 137 6 3 chrX 69109389 69111012 -107863128 + L1PA10 LINE L1 4521 6147 -21 640 188 0 8 chrX 69111012 69111129 -107863011 + MLT1A1-int LTR MaLR 1620 1735 0 979 261 30 58 chrX 69111150 69111479 -107862661 + MLT1A1 LTR MaLR 37 356 -9 273 216 23 0 chrX 69111507 69111590 -107862550 - L1M4c LINE L1 -3888 2496 2439 251 282 47 34 chrX 69111702 69111851 -107862289 - L1M4c LINE L1 -4155 2229 2079 32 43 0 0 chrX 69111864 69111910 -107862230 + AT_rich Low_complexity Low_complexity 1 46 0 1457 286 68 23 chrX 69112012 69112707 -107861433 - L1M4c LINE L1 -4559 1825 1100 2956 171 8 0 chrX 69112713 69113216 -107860924 + MER84 LTR ERV1 1 507 0 4849 160 1 3 chrX 69113216 69113977 -107860163 + MER84-int LTR ERV1 1 760 -4194 * 9613 135 11 8 chrX 69113974 69114938 -107859202 + MER84-int LTR ERV1 914 1886 -3068 4847 38 0 0 chrX 69114938 69115521 -107858619 - L1PA4 LINE L1 0 6155 5573 9613 135 11 8 chrX 69115521 69116048 -107858092 + MER84-int LTR ERV1 1886 2410 -2544 6481 138 11 15 chrX 69116573 69117613 -107856527 + MER84-int LTR ERV1 3918 4952 -2 2644 178 12 29 chrX 69117619 69117769 -107856371 + MER84 LTR ERV1 5 156 -351 2124 114 3 3 chrX 69117769 69118066 -107856074 - AluSx SINE Alu -15 297 1 2644 178 12 29 chrX 69118066 69118427 -107855713 + MER84 LTR ERV1 156 507 0 2666 290 57 90 chrX 69118427 69120250 -107853890 - L1M3de LINE L1 -4802 1851 361 387 0 0 0 chrX 69120333 69120376 -107853764 + (CA)n Simple_repeat Simple_repeat 2 44 0 1769 244 13 5 chrX 69120377 69120824 -107853316 + L1 LINE L1 3697 4147 -1999 225 325 59 16 chrX 69120830 69121153 -107852987 + L1M4 LINE L1 2200 2536 -3610 11221 221 51 17 chrX 69121155 69126530 -107847610 + L1PA15 LINE L1 1246 6810 -6 2559 284 139 30 chrX 69126528 69128223 -107845917 + L1M4 LINE L1 2521 4399 -1747 * 3512 237 56 21 chrX 69128224 69129085 -107845055 - MER54A LTR ERVL -2 899 9 297 75 0 0 chrX 69129094 69129134 -107845006 + (TG)n Simple_repeat Simple_repeat 2 41 0 1862 233 30 45 chrX 69129175 69130060 -107844080 + L1MC3 LINE L1 4744 5618 -743 1252 216 36 83 chrX 69130061 69130445 -107843695 - MLT1A2 LTR MaLR -1 373 8 862 256 37 25 chrX 69130462 69130567 -107843573 + L1MC3 LINE L1 5624 5726 -2316 2217 116 21 54 chrX 69130567 69130955 -107843185 + THE1C LTR MaLR 1 375 0 862 256 37 25 chrX 69130955 69131173 -107842967 + L1MC3 LINE L1 5726 5951 -2091 1131 154 35 5 chrX 69131173 69131374 -107842766 - Tigger1 DNA MER2_type -1 2417 2211 649 148 7 129 chrX 69131382 69131537 -107842603 - Tigger1 DNA MER2_type -2282 136 1 2308 286 23 72 chrX 69131540 69132762 -107841378 + L1MC3 LINE L1 5940 7101 -684 1717 141 182 22 chrX 69132859 69133228 -107840912 - MSTA LTR MaLR 0 428 1 1289 285 52 12 chrX 69133228 69133744 -107840396 + L1MD3 LINE L1 7447 7983 -12 23 0 0 0 chrX 69133745 69133768 -107840372 + AT_rich Low_complexity Low_complexity 1 23 0 306 276 27 65 chrX 69133899 69134084 -107840056 + L1M4 LINE L1 4531 4708 -1438 202 226 35 35 chrX 69134235 69134350 -107839790 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 719 183 25 0 chrX 69134663 69134676 -107839464 - L1P2 LINE L1 -483 5671 5660 1885 212 5 9 chrX 69134676 69135096 -107839044 - L1PB4 LINE L1 -6 6150 5733 719 183 25 0 chrX 69135096 69135229 -107838911 - L1P2 LINE L1 -494 5660 5520 * 6459 233 33 42 chrX 69135224 69135492 -107838648 - L1PB4 LINE L1 -1062 5084 4815 1781 203 79 20 chrX 69135492 69135896 -107838244 + MSTA LTR MaLR 1 428 0 6459 233 33 42 chrX 69135896 69137675 -107836465 - L1PB4 LINE L1 -1331 4815 3055 246 193 84 50 chrX 69137710 69137829 -107836311 + HAL1 LINE L1 1063 1185 -1322 222 118 0 0 chrX 69137924 69137958 -107836182 + (TC)n Simple_repeat Simple_repeat 1 34 0 617 298 103 58 chrX 69137983 69138501 -107835639 + HAL1 LINE L1 1299 1792 -715 2189 123 20 9 chrX 69138501 69138851 -107835289 - THE1A LTR MaLR -1 354 1 10769 126 3 0 chrX 69138851 69140426 -107833714 - THE1A-int LTR MaLR 0 1580 1 2269 129 8 11 chrX 69140426 69140782 -107833358 - THE1A LTR MaLR 0 355 1 617 298 103 58 chrX 69140782 69140845 -107833295 + HAL1 LINE L1 1791 1908 -599 253 232 42 0 chrX 69140848 69140943 -107833197 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 13332 204 36 32 chrX 69141058 69142456 -107831684 + L1PA12 LINE L1 1 1393 -6191 2045 172 127 48 chrX 69142456 69142998 -107831142 + LTR4 LTR ERV1 2 586 -2 13332 204 36 32 chrX 69142998 69143123 -107831017 + L1PA12 LINE L1 1393 1516 -6068 3145 98 16 5 chrX 69143123 69143571 -107830569 + MLT2A2 LTR ERVL 1 453 0 13332 204 36 32 chrX 69143571 69146847 -107827293 + L1PA12 LINE L1 1516 5111 -2473 384 77 0 0 chrX 69146847 69146899 -107827241 + (CA)n Simple_repeat Simple_repeat 2 53 0 13332 204 36 32 chrX 69146899 69147033 -107827107 + L1PA12 LINE L1 5111 5243 -2341 359 384 104 9 chrX 69147026 69147487 -107826653 + L1M2 LINE L1 605 1109 -6457 * 350 397 19 26 chrX 69147491 69147758 -107826382 + L1M2 LINE L1 1415 1679 -5887 2209 147 28 17 chrX 69147759 69148119 -107826021 - THE1B LTR MaLR 0 364 1 3936 122 14 10 chrX 69148119 69148709 -107825431 - THE1B-int LTR MaLR 0 1580 989 * 4801 86 1 6 chrX 69148678 69149328 -107824812 - THE1B-int LTR MaLR -933 647 1 2094 145 36 20 chrX 69149328 69149686 -107824454 - THE1B LTR MaLR 0 364 1 947 305 25 0 chrX 69150034 69150319 -107823821 + L1M2 LINE L1 1984 2275 -5290 * 1255 250 44 32 chrX 69150309 69150957 -107823183 + L1P4 LINE L1 690 1340 -4864 1129 231 14 70 chrX 69150975 69151391 -107822749 + L1 LINE L1 4951 5343 -803 1400 222 52 14 chrX 69152065 69152412 -107821728 + MLT1A1 LTR MaLR 6 365 0 246 62 0 0 chrX 69152835 69152867 -107821273 + (TA)n Simple_repeat Simple_repeat 2 33 0 2772 282 130 19 chrX 69153070 69153895 -107820245 + L1M4b LINE L1 4 951 -5908 198 0 0 0 chrX 69153895 69153917 -107820223 + (CA)n Simple_repeat Simple_repeat 1 22 0 2772 282 130 19 chrX 69153917 69154048 -107820092 + L1M4b LINE L1 951 1066 -5793 3948 204 24 20 chrX 69154054 69155421 -107818719 + L1P4 LINE L1 4284 5650 -573 10743 239 51 17 chrX 69155421 69159621 -107814519 + L1M2 LINE L1 2647 6997 -713 15587 224 24 37 chrX 69159634 69167333 -107806807 + L1PA13 LINE L1 11 7597 -4 269 101 25 25 chrX 69167333 69167412 -107806728 + (TA)n Simple_repeat Simple_repeat 2 80 0 2296 94 0 3 chrX 69167986 69168294 -107805846 + AluSq SINE Alu 1 307 -6 22 70 0 0 chrX 69170287 69170330 -107803810 + AT_rich Low_complexity Low_complexity 1 43 0 1761 154 4 0 chrX 69172657 69172923 -107801217 + AluSx SINE Alu 9 275 -37 189 0 0 0 chrX 69172933 69172954 -107801186 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 10007 137 3 3 chrX 69172956 69174734 -107799406 - L1P LINE L1 -1647 4499 2721 5864 88 36 2 chrX 69174735 69176276 -107797864 + L1PA8A LINE L1 4574 6148 0 4743 210 14 2 chrX 69176781 69177860 -107796280 + L1 LINE L1 3943 5034 -1112 6452 36 19 0 chrX 69177876 69178658 -107795482 - L1PA3 LINE L1 0 6155 5359 * 25683 35 4 8 chrX 69178650 69181841 -107792299 + L1PA3 LINE L1 2175 5355 -791 1347 169 126 12 chrX 69182746 69183000 -107791140 + AluSg1 SINE Alu 1 283 -26 4324 222 46 16 chrX 69183127 69188582 -107785558 + L1PA13 LINE L1 991 6810 -4 36 53 0 0 chrX 69188688 69188745 -107785395 + AT_rich Low_complexity Low_complexity 1 57 0 1951 158 7 0 chrX 69188957 69189254 -107784886 - AluSx SINE Alu -11 301 3 23 33 0 0 chrX 69189256 69189286 -107784854 + AT_rich Low_complexity Low_complexity 1 30 0 682 220 12 1 chrX 69190368 69190554 -107783586 + L1MC/D LINE L1 5273 5465 -858 2649 195 29 14 chrX 69190572 69191464 -107782676 + L1M2 LINE L1 4882 5785 -527 5553 274 50 11 chrX 69191473 69192862 -107781278 + L1MA4 LINE L1 7 1449 -5400 548 222 0 0 chrX 69192862 69192961 -107781179 - MER30 DNA MER1_type 0 230 132 5909 90 22 8 chrX 69192966 69194531 -107779609 + L1PA8 LINE L1 4388 5979 -193 359 164 45 109 chrX 69194530 69194616 -107779524 - L1PA15 LINE L1 -287 5878 5799 * 180 0 0 0 chrX 69194616 69194636 -107779504 + (TGG)n Simple_repeat Simple_repeat 1 20 0 359 164 45 109 chrX 69194636 69194659 -107779481 - L1PA15 LINE L1 -366 5799 5776 1037 147 12 6 chrX 69194680 69194843 -107779297 + AluSq SINE Alu 135 298 -15 276 167 0 17 chrX 69194867 69194927 -107779213 + L1MA4 LINE L1 1749 1807 -5042 2954 229 9 6 chrX 69194927 69196182 -107777958 + L1PB4 LINE L1 4532 5792 -364 635 233 21 16 chrX 69196309 69196502 -107777638 - L1 LINE L1 -996 5852 5659 630 192 0 0 chrX 69196514 69196618 -107777522 - L1 LINE L1 -6521 328 225 1570 200 38 29 chrX 69196625 69196636 -107777504 + L1PB4 LINE L1 5783 5792 -511 186 43 0 0 chrX 69196636 69196659 -107777481 + (CCA)n Simple_repeat Simple_repeat 1 23 0 1570 200 38 29 chrX 69196659 69197037 -107777103 + L1PB4 LINE L1 5792 6303 0 * 10939 236 37 23 chrX 69197028 69198956 -107775184 + L1MA4 LINE L1 1777 3677 -3214 2461 74 0 0 chrX 69198956 69199253 -107774887 - AluY SINE Alu -14 297 1 10939 236 37 23 chrX 69199253 69201485 -107772655 + L1MA4 LINE L1 3677 6032 -859 5460 187 18 18 chrX 69201502 69203260 -107770880 + L1PA16 LINE L1 4411 6157 -9 21 0 0 0 chrX 69203521 69203542 -107770598 + AT_rich Low_complexity Low_complexity 1 21 0 3943 206 49 14 chrX 69203854 69204838 -107769302 + L1MA4 LINE L1 5986 6997 -5 1706 196 52 26 chrX 69204863 69204900 -107769240 + L1MA9 LINE L1 5806 5841 -471 216 0 0 0 chrX 69204900 69204924 -107769216 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1706 196 52 26 chrX 69204924 69205345 -107768795 + L1MA9 LINE L1 5841 6276 -36 3095 213 28 12 chrX 69205365 69205948 -107768192 + L1MD1 LINE L1 5483 6082 -160 1601 172 55 12 chrX 69205948 69206273 -107767867 - MER44D DNA MER2_type 0 609 1 3095 213 28 12 chrX 69206273 69206435 -107767705 + L1MD1 LINE L1 6082 6240 -2 447 365 105 12 chrX 69206453 69206861 -107767279 + L2 LINE L2 1710 2155 -1159 320 235 12 0 chrX 69206991 69207076 -107767064 + MER115 DNA AcHobo 582 667 -26 1071 370 46 12 chrX 69207090 69207674 -107766466 + L2 LINE L2 2242 2845 -469 33 66 0 0 chrX 69207748 69207809 -107766331 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chrX 69208191 69208225 -107765915 + AT_rich Low_complexity Low_complexity 1 34 0 451 266 0 22 chrX 69208236 69208375 -107765765 - L1MDa LINE L1 -4560 1980 1845 7278 210 13 5 chrX 69208380 69210786 -107763354 - L1PA14 LINE L1 -14 6798 4382 4682 209 33 34 chrX 69210795 69211127 -107763013 - L1PA14 LINE L1 -3314 3483 3152 1880 148 23 16 chrX 69211127 69211437 -107762703 - AluSx SINE Alu 0 312 1 2053 135 7 0 chrX 69211439 69211736 -107762404 - AluSq SINE Alu -12 301 3 4682 209 33 34 chrX 69211736 69211996 -107762144 - L1PA14 LINE L1 -3646 3151 2892 1834 139 104 24 chrX 69211996 69212333 -107761807 + THE1B LTR MaLR 1 364 0 4682 209 33 34 chrX 69212333 69213225 -107760915 - L1PA14 LINE L1 -3905 2892 1997 1773 105 11 22 chrX 69213225 69213492 -107760648 - AluSc SINE Alu -3 306 43 4682 209 33 34 chrX 69213492 69213915 -107760225 - L1PA14 LINE L1 -4800 1997 1575 5149 267 20 14 chrX 69213931 69215258 -107758882 - L1PA14 LINE L1 -5537 1250 1 476 223 99 78 chrX 69215484 69215767 -107758373 - L1MB7 LINE L1 -13 6171 5883 346 298 53 15 chrX 69215827 69215958 -107758182 + MIR SINE MIR 119 254 -8 487 165 0 0 chrX 69216091 69216182 -107757958 - L1MA5 LINE L1 0 6300 6210 259 289 7 74 chrX 69216229 69216364 -107757776 + L2 LINE L2 3184 3309 -4 225 119 0 0 chrX 69216377 69216419 -107757721 + (TG)n Simple_repeat Simple_repeat 2 43 0 2035 155 121 5 chrX 69217087 69217468 -107756672 - MSTA LTR MaLR -1 427 3 8598 194 17 3 chrX 69217470 69219094 -107755046 - MSTA-int LTR MaLR 0 1651 5 1693 181 144 5 chrX 69219113 69219489 -107754651 - MSTA LTR MaLR 0 428 1 2621 234 107 20 chrX 69219490 69220084 -107754056 + Tigger6a DNA MER2_type 1 699 -898 2952 3 0 0 chrX 69220084 69220401 -107753739 - AluYb8 SINE Alu -1 317 1 2621 234 107 20 chrX 69220401 69220698 -107753442 + Tigger6a DNA MER2_type 699 969 -114 3947 189 56 12 chrX 69220762 69221640 -107752500 - L1MB3 LINE L1 -3 6180 5265 1260 221 55 0 chrX 69221666 69221937 -107752203 + Ricksha DNA DNA 3 288 -1758 1018 205 15 0 chrX 69221935 69222140 -107752000 + Ricksha DNA DNA 1821 2028 -1218 * 378 407 12 8 chrX 69222144 69222397 -107751743 + L1PA13 LINE L1 123 376 -6411 * 5051 181 14 12 chrX 69222394 69223933 -107750207 + L1PA16 LINE L1 4595 6129 -37 2365 200 17 4 chrX 69223933 69224452 -107749688 + Ricksha DNA DNA 2709 3234 -17 1714 285 31 10 chrX 69224478 69225179 -107748961 - L1 LINE L1 -1078 5068 4353 * 3986 197 41 11 chrX 69225178 69226326 -107747814 - L1PB4 LINE L1 -2 6154 4978 309 225 35 35 chrX 69226318 69226460 -107747680 - L1 LINE L1 -1772 4374 4233 * 6735 224 55 54 chrX 69226471 69227272 -107746868 - L1MB1 LINE L1 0 6168 5370 2098 109 10 7 chrX 69227272 69227574 -107746566 - AluSg SINE Alu -7 303 1 6735 224 55 54 chrX 69227574 69227833 -107746307 - L1MB1 LINE L1 -798 5370 5113 2153 99 7 0 chrX 69227833 69228127 -107746013 + AluSc SINE Alu 1 296 -13 6735 224 55 54 chrX 69228127 69229304 -107744836 - L1MB1 LINE L1 -1055 5113 3940 351 0 0 0 chrX 69229304 69229343 -107744797 + (TA)n Simple_repeat Simple_repeat 2 40 0 1838 141 4 0 chrX 69229343 69229612 -107744528 - AluSx SINE Alu -12 300 31 6735 224 55 54 chrX 69229612 69230749 -107743391 - L1MB1 LINE L1 -2227 3941 2761 1634 244 56 4 chrX 69230747 69231251 -107742889 - L1MA9 LINE L1 0 7731 7202 * 230 221 116 0 chrX 69231274 69231360 -107742780 - HSMAR2 DNA Mariner -2 1300 1205 663 219 13 13 chrX 69231364 69231515 -107742625 + HSMAR2 DNA Mariner 946 1096 -206 * 5988 180 35 26 chrX 69231505 69232710 -107741430 - HSMAR2 DNA Mariner -83 1219 4 2285 196 25 15 chrX 69232716 69233269 -107740871 - L1MA9 LINE L1 -519 7212 6654 461 197 120 43 chrX 69233269 69233386 -107740754 + MSTC LTR MaLR 1 126 -302 2683 240 92 31 chrX 69233409 69233555 -107740585 - MER21B LTR ERV1 -3 860 724 345 100 0 0 chrX 69233555 69233605 -107740535 + (CAATT)n Simple_repeat Simple_repeat 2 51 0 2683 240 92 31 chrX 69233605 69234265 -107739875 - MER21B LTR ERV1 -139 724 5 4482 307 57 29 chrX 69234302 69235455 -107738685 - HERVFH19I LTR ERV1 -3823 3896 2777 1809 133 0 0 chrX 69235455 69235711 -107738429 + AluSx SINE Alu 36 291 -21 4482 307 57 29 chrX 69235711 69237644 -107736496 - HERVFH19I LTR ERV1 -4942 2777 653 446 194 177 0 chrX 69238571 69238695 -107735445 - L1PB4 LINE L1 -1264 4882 4737 400 94 0 0 chrX 69238879 69238943 -107735197 - L1PA16 LINE L1 0 6166 6103 1769 194 25 5 chrX 69238946 69239354 -107734786 - L1PB4 LINE L1 -1415 4731 4316 6716 227 31 28 chrX 69239358 69240127 -107734013 - L1MA9 LINE L1 -987 6578 5813 2359 82 0 0 chrX 69240127 69240421 -107733719 - AluY SINE Alu -17 294 1 6716 227 31 28 chrX 69240421 69241591 -107732549 - L1MA9 LINE L1 -1752 5813 4633 21 57 0 0 chrX 69241626 69241661 -107732479 + AT_rich Low_complexity Low_complexity 1 35 0 4503 191 18 15 chrX 69241661 69242712 -107731428 - L1M1 LINE L1 -556 6450 5404 207 0 0 0 chrX 69242712 69242735 -107731405 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4503 191 18 15 chrX 69242735 69243098 -107731042 - L1M1 LINE L1 -1602 5404 5025 2117 119 7 0 chrX 69243098 69243393 -107730747 - AluSc SINE Alu -12 297 1 4503 191 18 15 chrX 69243393 69243416 -107730724 - L1M1 LINE L1 -1981 5025 5004 5890 176 24 4 chrX 69243444 69244842 -107729298 - L1MA1 LINE L1 -4 6298 4873 1620 174 111 61 chrX 69244854 69244908 -107729232 + MSTA LTR MaLR 1 51 -377 2002 142 0 0 chrX 69244908 69245217 -107728923 - AluSg SINE Alu 0 309 1 1620 174 111 61 chrX 69245217 69245568 -107728572 + MSTA LTR MaLR 51 427 -1 7295 175 61 42 chrX 69245571 69247119 -107727021 + MSTA-int LTR MaLR 3 1580 0 1960 162 123 5 chrX 69247119 69247502 -107726638 + MSTA LTR MaLR 1 428 0 5212 244 28 15 chrX 69247502 69249258 -107724882 - L1MA9 LINE L1 -5094 2471 12 964 251 30 55 chrX 69249269 69249508 -107724632 - L1M1 LINE L1 -2992 3856 3612 1379 237 3 0 chrX 69249508 69249799 -107724341 - AluJb SINE Alu -16 296 5 964 251 30 55 chrX 69249799 69250064 -107724076 - L1M1 LINE L1 -3236 3612 3365 3924 213 48 30 chrX 69250065 69251542 -107722598 - L1M1 LINE L1 -3663 3185 1681 1111 249 52 41 chrX 69251509 69252314 -107721826 - L1M4 LINE L1 -3467 3381 2567 * 992 203 60 26 chrX 69252345 69252611 -107721529 - L1MB2 LINE L1 -10 6161 5887 2010 241 24 9 chrX 69252624 69253175 -107720965 - L1P LINE L1 -3129 3017 2459 1814 227 31 24 chrX 69253266 69253432 -107720708 + MSTB LTR MaLR 3 166 -260 1853 27 0 0 chrX 69253432 69253654 -107720486 + L1PA2 LINE L1 5931 6152 -3 1814 227 31 24 chrX 69253654 69253906 -107720234 + MSTB LTR MaLR 166 424 -2 2104 261 53 38 chrX 69253972 69254974 -107719166 - L1M4 LINE L1 -4539 1845 829 545 261 8 0 chrX 69255561 69255695 -107718445 + Tigger6 DNA MER2_type 1462 1596 -1 281 379 30 30 chrX 69255967 69256136 -107718004 - MIR3 SINE MIR -3 205 37 23 0 0 0 chrX 69257477 69257500 -107716640 + AT_rich Low_complexity Low_complexity 1 23 0 266 169 0 28 chrX 69257638 69257709 -107716431 + CT-rich Low_complexity Low_complexity 4 72 0 231 36 0 0 chrX 69257710 69257738 -107716402 + (TG)n Simple_repeat Simple_repeat 2 29 0 203 161 0 0 chrX 69257753 69257784 -107716356 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 21 71 0 0 chrX 69258088 69258130 -107716010 + AT_rich Low_complexity Low_complexity 1 42 0 1228 137 0 47 chrX 69259075 69259287 -107714853 - L1PA15 LINE L1 -8 6157 5956 198 0 0 0 chrX 69259519 69259541 -107714599 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2314 56 0 13 chrX 69259545 69259847 -107714293 - L1PA5 LINE L1 -14 6140 5843 872 203 153 19 chrX 69260149 69260460 -107713680 - L1ME2 LINE L1 -203 5961 5600 * 4188 188 30 9 chrX 69260458 69261418 -107712722 - L1MB7 LINE L1 -28 6156 5180 357 155 0 0 chrX 69261519 69261577 -107712563 + Alu SINE Alu 238 295 -7 2253 235 22 29 chrX 69262165 69262794 -107711346 + L1MA7 LINE L1 5667 6291 0 684 181 0 26 chrX 69262838 69262993 -107711147 + L1MA9 LINE L1 6162 6312 0 228 138 46 0 chrX 69263155 69263220 -107710920 + (TAGA)n Simple_repeat Simple_repeat 1 68 0 18127 194 34 6 chrX 69263747 69267547 -107706593 + L1MA1 LINE L1 12 3915 -3650 6496 166 32 9 chrX 69267545 69269962 -107704178 + L1MA1 LINE L1 5255 7721 0 * 1200 44 0 50 chrX 69270058 69270240 -107703900 + L1PA3 LINE L1 5660 5832 -323 6276 26 0 0 chrX 69270427 69271157 -107702983 + L1PA4 LINE L1 5423 6152 -3 400 252 35 0 chrX 69271256 69271371 -107702769 + L1MA7 LINE L1 6164 6282 -9 37 39 0 0 chrX 69271521 69271572 -107702568 + AT_rich Low_complexity Low_complexity 1 51 0 331 336 70 0 chrX 69272016 69272159 -107701981 + L1M4 LINE L1 4873 5025 -1121 1717 174 4 0 chrX 69272171 69272485 -107701655 + AluSx SINE Alu 1 315 0 459 368 124 23 chrX 69272563 69273278 -107700862 + L1M2 LINE L1 1 889 -6320 629 269 60 6 chrX 69273584 69273751 -107700389 + L1PA15-16 LINE L1 565 740 -6825 407 244 0 0 chrX 69273742 69273828 -107700312 + L1PA15-16 LINE L1 2194 2279 -5286 * 379 196 293 0 chrX 69273815 69273948 -107700192 + L1PA15-16 LINE L1 2053 2224 -5342 * 311 270 0 35 chrX 69274004 69274119 -107700021 - L1PA15-16 LINE L1 -4608 2241 2131 2744 275 53 23 chrX 69274135 69275697 -107698443 + L1PA15-16 LINE L1 2312 4019 -3546 7606 27 1 1 chrX 69275721 69276700 -107697440 + L1PA4 LINE L1 5177 6155 0 25 0 0 0 chrX 69276720 69276745 -107697395 + AT_rich Low_complexity Low_complexity 1 25 0 424 185 110 27 chrX 69276746 69276892 -107697248 + Charlie5 DNA MER1_type 2391 2548 -64 16863 211 28 13 chrX 69276991 69284566 -107689574 + L1MA1 LINE L1 17 7717 -4 7690 237 38 24 chrX 69284589 69287852 -107686288 + L1MA4A LINE L1 2670 6049 -254 1246 209 86 7 chrX 69287641 69287943 -107686197 + L1PB4 LINE L1 5818 6143 -13 * 889 230 28 0 chrX 69287983 69288263 -107685877 + L1M2 LINE L1 5163 5449 -743 3035 143 59 11 chrX 69288265 69288846 -107685294 + MER4B LTR ERV1 2 777 -2 1710 148 11 14 chrX 69288848 69289131 -107685009 + MER4B-int LTR ERV1 1 282 -6476 1579 192 11 0 chrX 69289168 69289439 -107684701 + MER4B-int LTR ERV1 231 504 -6254 186 258 97 65 chrX 69289439 69289532 -107684608 - L3 LINE CR1 -1206 371 276 640 170 0 0 chrX 69289532 69289644 -107684496 + MER4B-int LTR ERV1 600 711 -6047 1736 233 90 21 chrX 69289688 69290156 -107683984 - MER50 LTR ERV1 0 734 235 5026 159 35 5 chrX 69290224 69291230 -107682910 - MER50-int LTR ERV1 -3253 3219 1276 1097 186 29 34 chrX 69291221 69291630 -107682510 - MER50-int LTR ERV1 -812 4068 890 * 690 141 31 16 chrX 69291613 69291741 -107682399 - MER50-int LTR ERV1 -1165 3715 3586 * 511 279 9 0 chrX 69291738 69291849 -107682291 - MER50-int LTR ERV1 -4305 2900 2789 * 451 201 18 73 chrX 69291843 69292006 -107682134 - MER50-int LTR ERV1 -436 4781 1668 * 180 305 0 86 chrX 69292025 69292130 -107682010 + L2 LINE L2 1492 1587 -1727 5004 208 39 17 chrX 69292130 69293532 -107680608 - MER50-int LTR ERV1 -5666 1539 5 483 157 198 8 chrX 69293535 69293656 -107680484 - MER50 LTR ERV1 0 734 591 4953 182 94 2 chrX 69293656 69294590 -107679550 + LTR28 LTR ERV1 1 1020 0 2548 211 101 27 chrX 69294744 69295375 -107678765 + LTR28-int LTR ERV1 168 845 -6246 3611 202 56 28 chrX 69295379 69296207 -107677933 + LTR28-int LTR ERV1 4067 4917 -300 3830 176 23 16 chrX 69296222 69296666 -107677474 + LTR28-int LTR ERV1 604 1043 -4174 1774 183 0 13 chrX 69296666 69296972 -107677168 - AluSx SINE Alu -10 302 1 3830 176 23 16 chrX 69296972 69297807 -107676333 + LTR28-int LTR ERV1 1043 1796 -3421 421 156 21 52 chrX 69297797 69297893 -107676247 + LTR28-int LTR ERV1 2390 2482 -2735 * 270 176 0 0 chrX 69297904 69297955 -107676185 + (TA)n Simple_repeat Simple_repeat 1 51 0 6555 156 29 11 chrX 69297955 69299680 -107674460 + LTR28-int LTR ERV1 2482 5217 0 4177 185 86 86 chrX 69299681 69300699 -107673441 + LTR28 LTR ERV1 3 1020 0 1130 263 149 31 chrX 69300702 69301219 -107672921 - MER50 LTR ERV1 -149 585 8 731 150 0 0 chrX 69301366 69301479 -107672661 - AluSq SINE Alu -140 173 61 8098 131 30 1 chrX 69301479 69302692 -107671448 + THE1B-int LTR MaLR 333 1580 0 2261 132 11 27 chrX 69302692 69303062 -107671078 + THE1B LTR MaLR 1 364 0 2972 137 71 33 chrX 69303062 69303611 -107670529 + MER4B-int LTR ERV1 6189 6758 0 2797 157 68 18 chrX 69303611 69304158 -107669982 + MER4B LTR ERV1 1 574 -36 634 203 15 3 chrX 69304181 69304347 -107669793 + L1M2 LINE L1 5443 5599 -692 779 177 0 0 chrX 69304350 69304474 -107669666 + AluJo/FLAM SINE Alu 3 126 -176 253 255 0 0 chrX 69304477 69304519 -107669621 + AluSp SINE Alu 129 170 -133 1610 112 33 0 chrX 69304519 69304760 -107669380 - PABL_B LTR ERV1 0 667 419 371 198 38 0 chrX 69304796 69304902 -107669238 + L1MA7 LINE L1 6182 6291 0 21 71 0 0 chrX 69304912 69304954 -107669186 + AT_rich Low_complexity Low_complexity 1 42 0 562 269 87 67 chrX 69304958 69305359 -107668781 + L1ME1 LINE L1 5753 6161 -5 21 71 0 0 chrX 69305886 69305928 -107668212 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chrX 69306554 69306588 -107667552 + AT_rich Low_complexity Low_complexity 1 34 0 1904 123 3 7 chrX 69306885 69307214 -107666926 - AluSx SINE Alu 0 328 1 501 60 0 67 chrX 69307615 69307749 -107666391 + (TA)n Simple_repeat Simple_repeat 1 125 0 304 181 43 64 chrX 69307755 69307849 -107666291 + L1MC4 LINE L1 6614 6705 -1337 679 135 0 10 chrX 69307872 69307999 -107666141 + AluSg/x SINE Alu 180 305 0 432 0 0 0 chrX 69308170 69308218 -107665922 + (TA)n Simple_repeat Simple_repeat 2 49 0 1699 194 12 9 chrX 69308736 69309082 -107665058 - L1P LINE L1 -1366 4780 4434 1866 149 129 6 chrX 69309082 69309432 -107664708 + MSTA LTR MaLR 1 393 -35 325 342 129 45 chrX 69309846 69310287 -107663853 - L2 LINE L2 -1041 2273 1796 270 273 0 0 chrX 69310631 69310719 -107663421 - L1P LINE L1 -1713 4433 4346 * 668 154 15 15 chrX 69310718 69310837 -107663303 + L1PA13 LINE L1 4796 4917 -1229 4996 101 11 1 chrX 69310837 69311566 -107662574 + L1PA13 LINE L1 5405 6144 -19 245 307 210 17 chrX 69312094 69312270 -107661870 + MIR SINE MIR 47 256 -6 265 267 48 38 chrX 69312643 69312748 -107661392 + MIR SINE MIR 154 259 -3 281 303 160 0 chrX 69312758 69312877 -107661263 - MIR SINE MIR -69 193 56 250 208 0 21 chrX 69313105 69313153 -107660987 - L1P1 LINE L1 -496 5659 5613 1993 180 35 43 chrX 69313156 69313713 -107660427 + MLT2A2 LTR ERVL 1 547 -7 813 238 120 41 chrX 69313719 69314242 -107659898 - L1ME LINE L1 -558 5608 5059 801 179 0 0 chrX 69314238 69314410 -107659730 + L1P LINE L1 4596 4767 -1379 * 16638 216 18 13 chrX 69314580 69320065 -107654075 - L1PA14 LINE L1 -15 6797 1266 687 25 0 0 chrX 69320065 69320146 -107653994 + (GAA)n Simple_repeat Simple_repeat 3 83 0 16638 216 18 13 chrX 69320146 69321419 -107652721 - L1PA14 LINE L1 -5546 1266 1 442 265 31 94 chrX 69321526 69321586 -107652554 - L1ME1 LINE L1 -3 6244 6182 1981 144 3 0 chrX 69321586 69321878 -107652262 + AluSx SINE Alu 1 293 -19 442 265 31 94 chrX 69321878 69322102 -107652038 - L1ME1 LINE L1 -65 6182 5974 1487 213 30 115 chrX 69322124 69322462 -107651678 - L1ME1 LINE L1 -244 5991 5626 2054 130 23 0 chrX 69322462 69322762 -107651378 + AluSx SINE Alu 1 307 -5 1487 213 30 115 chrX 69322762 69322885 -107651255 - L1ME1 LINE L1 -609 5626 5602 216 0 0 0 chrX 69322885 69322909 -107651231 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1487 213 30 115 chrX 69322909 69323113 -107651027 - L1ME1 LINE L1 -633 5602 5382 206 122 0 20 chrX 69323139 69323188 -107650952 + (TA)n Simple_repeat Simple_repeat 2 49 0 301 275 11 22 chrX 69323210 69323301 -107650839 - L1MC4 LINE L1 -1339 6703 6614 2003 167 26 0 chrX 69323304 69323652 -107650488 - THE1B LTR MaLR -3 361 5 216 0 0 0 chrX 69323654 69323678 -107650462 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 264 59 0 0 chrX 69323677 69323711 -107650429 + (CA)n Simple_repeat Simple_repeat 2 35 0 229 182 10 101 chrX 69323711 69323810 -107650330 - L1MC4 LINE L1 -1339 6703 6614 456 188 8 43 chrX 69323872 69323989 -107650151 - L1ME1 LINE L1 -906 5309 5197 27 0 0 0 chrX 69324032 69324059 -107650081 + AT_rich Low_complexity Low_complexity 1 27 0 1090 259 48 40 chrX 69324065 69324520 -107649620 - L1MA9 LINE L1 -38 6274 5816 1486 203 18 2 chrX 69324526 69324932 -107649208 + L1M2 LINE L1 5158 5568 -723 227 250 17 106 chrX 69325044 69325103 -107649037 - L1ME1 LINE L1 -1202 5013 4950 343 0 0 0 chrX 69325103 69325141 -107648999 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 2145 105 0 0 chrX 69325141 69325418 -107648722 - AluSc SINE Alu -1 316 3 227 250 17 106 chrX 69325418 69325537 -107648603 - L1ME1 LINE L1 -1263 4952 4850 * 772 277 87 14 chrX 69325534 69326031 -107648109 - L1ME1 LINE L1 -3574 2641 2152 403 244 39 13 chrX 69326027 69326183 -107647957 - L1MB8 LINE L1 0 6178 6019 * 2035 241 48 4 chrX 69326183 69326643 -107647497 + MLT2B1 LTR ERVL 1 480 -40 192 217 0 0 chrX 69326644 69326690 -107647450 + (TG)n Simple_repeat Simple_repeat 1 46 0 315 196 0 0 chrX 69326690 69326742 -107647398 + Ricksha DNA DNA 853 904 -1142 5466 253 28 37 chrX 69326742 69328187 -107645953 + ERVL-B1 LTR ERVL 2 1432 -4332 1107 208 9 4 chrX 69328188 69328418 -107645722 + L1MA2 LINE L1 5465 5695 -467 * 12735 212 18 12 chrX 69328414 69331779 -107642361 - L1P4 LINE L1 -519 7080 3699 1775 158 57 28 chrX 69331784 69332138 -107642002 - THE1C LTR MaLR -11 364 1 9362 164 21 23 chrX 69332146 69334237 -107639903 - L1P4 LINE L1 -3891 3693 1592 602 196 0 54 chrX 69334231 69334379 -107639761 - L1 LINE L1 -1936 4210 4071 * 280 114 45 0 chrX 69334379 69334423 -107639717 - THE1C LTR MaLR 0 375 330 2261 161 34 12 chrX 69334423 69334920 -107639220 + L1MA2 LINE L1 5797 6304 0 1003 298 76 4 chrX 69334925 69335411 -107638729 + L1MC/D LINE L1 2201 2721 -3425 1182 218 24 48 chrX 69335422 69335538 -107638602 + AluJo SINE Alu 1 118 -194 1956 148 54 20 chrX 69335538 69335890 -107638250 - THE1B LTR MaLR 0 364 1 10951 115 4 4 chrX 69335890 69337267 -107636873 - THE1B-int LTR MaLR 0 1580 203 2135 113 13 0 chrX 69337267 69337567 -107636573 - AluSg SINE Alu -6 304 1 10951 115 4 4 chrX 69337567 69337770 -107636370 - THE1B-int LTR MaLR -1377 203 1 2195 126 52 14 chrX 69337770 69338118 -107636022 - THE1B LTR MaLR 0 364 4 1182 218 24 48 chrX 69338118 69338288 -107635852 + AluJo SINE Alu 115 282 -30 1156 237 43 65 chrX 69338307 69339034 -107635106 + L1MC/D LINE L1 2723 3433 -2713 * 3429 263 53 28 chrX 69339024 69340749 -107633391 + L1MC/D LINE L1 3661 5431 -751 356 179 60 0 chrX 69341341 69341364 -107632776 - L1MA4A LINE L1 -27 6276 6254 1549 213 6 3 chrX 69341364 69341688 -107632452 - L1PB4 LINE L1 -38 6118 5794 204 325 38 0 chrX 69342035 69342115 -107632025 - MIR SINE MIR -46 216 134 203 337 22 11 chrX 69342081 69342173 -107631967 + MIR SINE MIR 133 225 -37 * 210 268 0 0 chrX 69342231 69342287 -107631853 + (TTA)n Simple_repeat Simple_repeat 1 56 0 309 26 0 0 chrX 69342371 69342409 -107631731 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 31 0 0 0 chrX 69342690 69342721 -107631419 + AT_rich Low_complexity Low_complexity 1 31 0 328 186 47 0 chrX 69342770 69342942 -107631198 + (TA)n Simple_repeat Simple_repeat 1 180 0 966 233 17 127 chrX 69343297 69343507 -107630633 + MLT1A2 LTR MaLR 1 144 -230 231 36 0 0 chrX 69343507 69343535 -107630605 + (TG)n Simple_repeat Simple_repeat 2 29 0 966 233 17 127 chrX 69343535 69343740 -107630400 + MLT1A2 LTR MaLR 144 370 -4 252 43 149 21 chrX 69343888 69343935 -107630205 - MER51D LTR ERV1 -76 581 529 20344 97 7 3 chrX 69344788 69347637 -107626503 + L1P LINE L1 107 2967 -3179 1624 204 53 46 chrX 69348478 69348871 -107625269 - MSTB1 LTR MaLR 0 432 37 798 228 53 11 chrX 69349040 69349384 -107624756 - L1MA4A LINE L1 -751 5395 5060 522 176 66 56 chrX 69349418 69349608 -107624532 + L1MA8 LINE L1 6117 6310 -2 819 228 0 5 chrX 69349853 69350054 -107624086 + L1MC1 LINE L1 5397 5592 -741 5015 163 33 13 chrX 69350073 69351168 -107622972 - L1PA15 LINE L1 -28 6137 5065 2270 65 7 4 chrX 69351168 69351445 -107622695 - AluY SINE Alu -13 298 21 5015 163 33 13 chrX 69351445 69351661 -107622479 - L1PA15 LINE L1 -1100 5065 4798 2118 83 0 0 chrX 69351661 69351950 -107622190 - L1PA8 LINE L1 -1 6171 5883 5015 163 33 13 chrX 69351950 69352072 -107622068 - L1PA15 LINE L1 -1367 4798 4680 2318 229 59 7 chrX 69352073 69352681 -107621459 + L1MC1 LINE L1 5588 6227 -106 2033 148 18 6 chrX 69352681 69353019 -107621121 - MER61A LTR ERV1 -1 342 1 12071 105 36 19 chrX 69353019 69354821 -107619319 - MER61A-int LTR ERV1 0 5217 3386 1647 144 35 8 chrX 69354822 69355079 -107619061 - AluSx SINE Alu -19 293 30 3612 140 59 55 chrX 69355079 69355585 -107618555 - MER61A-int LTR ERV1 -3239 3886 3384 2451 62 0 10 chrX 69355585 69355892 -107618248 - AluY SINE Alu -7 304 1 3612 140 59 55 chrX 69355892 69356631 -107617509 - MER61A-int LTR ERV1 -3741 3384 2650 2152 118 7 0 chrX 69356631 69356928 -107617212 + AluSq SINE Alu 4 302 -11 3612 140 59 55 chrX 69356928 69357023 -107617117 - MER61A-int LTR ERV1 -4475 2650 1 1847 173 33 9 chrX 69357023 69357358 -107616782 - MER61A LTR ERV1 0 343 1 346 241 19 19 chrX 69357361 69357469 -107616671 + L1MC1 LINE L1 6226 6333 0 927 325 12 16 chrX 69357513 69358014 -107616126 - L1MCc LINE L1 -4568 2375 1877 10256 216 48 15 chrX 69358015 69359138 -107615002 - L1MA4A LINE L1 -7 6998 5914 2281 188 11 63 chrX 69359138 69359674 -107614466 - LTR22 LTR ERVK 0 509 2 10256 216 48 15 chrX 69359674 69360940 -107613200 - L1MA4A LINE L1 -1091 5914 4692 1453 118 5 32 chrX 69360940 69361161 -107612979 - AluSg/x SINE Alu -11 299 85 10256 216 48 15 chrX 69361161 69361331 -107612809 - L1MA4A LINE L1 -2313 4692 4529 360 0 0 0 chrX 69361331 69361371 -107612769 + (TG)n Simple_repeat Simple_repeat 2 41 0 10256 216 48 15 chrX 69361371 69363965 -107610175 - L1MA4A LINE L1 -2476 4529 1599 1145 298 54 16 chrX 69364103 69364529 -107609611 + MLT1A1-int LTR MaLR 1294 1735 0 926 180 4 10 chrX 69364533 69364809 -107609331 + MLT1A1 LTR MaLR 5 363 -2 1431 254 20 20 chrX 69364825 69365179 -107608961 + MLT1A1 LTR MaLR 12 365 0 2119 287 71 77 chrX 69365338 69365507 -107608633 - L1MCc LINE L1 -4915 1508 1340 1155 205 41 68 chrX 69365507 69365800 -107608340 + AluJo SINE Alu 4 288 -14 2119 287 71 77 chrX 69365800 69367116 -107607024 - L1MCc LINE L1 -5083 1340 31 1722 234 88 20 chrX 69367377 69367864 -107606276 - MLT2B1 LTR ERVL 0 520 1 18551 222 34 12 chrX 69367877 69369643 -107604497 - ERVL-B1-B1 LTR ERVL -20 5744 4018 950 236 71 68 chrX 69369643 69370037 -107604103 + MSTD LTR MaLR 2 396 0 18551 222 34 12 chrX 69370037 69372186 -107601954 - ERVL-B1-B1 LTR ERVL -1746 4018 1744 3765 252 64 80 chrX 69372181 69373748 -107600392 - ERVL-B1-B1 LTR ERVL -4222 1542 2 * 330 138 0 0 chrX 69373787 69373845 -107600295 + (TG)n Simple_repeat Simple_repeat 1 58 0 1865 216 64 29 chrX 69373861 69374314 -107599826 - MLT2B1 LTR ERVL -51 469 1 286 227 98 31 chrX 69374974 69375137 -107599003 - L1ME4a LINE L1 -5 6116 5943 242 344 11 0 chrX 69375309 69375399 -107598741 - L1ME4a LINE L1 -293 5828 5738 7570 33 0 0 chrX 69375430 69376673 -107597467 - L1PA4 LINE L1 0 6155 4913 683 306 110 27 chrX 69377171 69377763 -107596377 + L1M4 LINE L1 4158 4805 -1341 2549 105 0 31 chrX 69377763 69378155 -107595985 + L1PA7 LINE L1 5775 6154 0 683 306 110 27 chrX 69378155 69378182 -107595958 + L1M4 LINE L1 4805 4828 -1318 283 309 83 29 chrX 69378186 69378436 -107595704 + L1PA15 LINE L1 52 1051 -6534 10772 260 31 42 chrX 69379346 69382172 -107591968 + L1PA15 LINE L1 2411 5173 -2411 2026 161 30 3 chrX 69382172 69382533 -107591607 + L1PA15 LINE L1 7225 7595 -8 10772 260 31 42 chrX 69382533 69384179 -107589961 + L1PA15 LINE L1 5173 6835 -749 * 13326 106 6 0 chrX 69384177 69386127 -107588013 + L1P LINE L1 3312 5272 -874 294 271 0 0 chrX 69386265 69386372 -107587768 + GA-rich Low_complexity Low_complexity 3 109 0 351 160 0 96 chrX 69386386 69386480 -107587660 + L1MD3 LINE L1 7826 7910 -85 * 1189 274 78 43 chrX 69386477 69386975 -107587165 + L1MC4 LINE L1 7411 7935 -107 204 40 0 0 chrX 69386975 69387000 -107587140 + (GA)n Simple_repeat Simple_repeat 1 25 0 1189 274 78 43 chrX 69387000 69387106 -107587034 + L1MC4 LINE L1 7935 8036 -6 30 59 0 0 chrX 69387365 69387416 -107586724 + AT_rich Low_complexity Low_complexity 1 51 0 661 167 0 9 chrX 69387918 69388026 -107586114 + U6 snRNA snRNA 1 107 0 4454 246 36 23 chrX 69388026 69388596 -107585544 + L1PA10 LINE L1 1950 2511 -4338 2100 85 0 0 chrX 69388596 69388854 -107585286 - AluY SINE Alu -15 296 39 4454 246 36 23 chrX 69388854 69390518 -107583622 + L1PA10 LINE L1 2511 4211 -2638 189 0 0 0 chrX 69390518 69390539 -107583601 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1690 174 30 9 chrX 69390541 69390874 -107583266 + L1PA10 LINE L1 4427 4766 -2083 1343 193 4 8 chrX 69390874 69391117 -107583023 - MSTA LTR MaLR 0 428 187 4191 136 20 13 chrX 69391137 69391845 -107582295 - L1PA11 LINE L1 -1 6173 5461 2173 174 13 15 chrX 69391880 69392335 -107581805 - L1PA13 LINE L1 -4510 1941 1488 2074 237 20 80 chrX 69392349 69393167 -107580973 - L1PA13 LINE L1 -5127 1334 566 5335 124 17 41 chrX 69393213 69394141 -107579999 + L1PA10 LINE L1 5962 6867 -4 3607 159 12 9 chrX 69394144 69394793 -107579347 + L1PA16 LINE L1 5515 6165 -1 270 277 36 0 chrX 69395134 69395217 -107578923 - MIR SINE MIR -61 201 116 4960 137 14 6 chrX 69395538 69396341 -107577799 + L1PA13 LINE L1 5355 6163 0 1873 178 15 3 chrX 69396381 69396718 -107577422 - MER7A DNA MER2_type -7 339 1 196 262 0 0 chrX 69396792 69396834 -107577306 + MIR SINE MIR 112 153 -109 229 206 44 50 chrX 69396852 69397032 -107577108 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 * 343 236 35 17 chrX 69396935 69397109 -107577031 + (TA)n Simple_repeat Simple_repeat 1 177 0 468 183 67 0 chrX 69397147 69397267 -107576873 + L1MA7 LINE L1 6161 6288 -3 30 27 0 0 chrX 69397267 69397304 -107576836 + AT_rich Low_complexity Low_complexity 1 37 0 448 340 6 6 chrX 69397384 69397546 -107576594 - MIR SINE MIR -63 199 38 271 358 71 53 chrX 69397655 69398160 -107575980 + L2 LINE L2 308 821 -2493 2270 121 0 0 chrX 69398353 69398660 -107575480 - AluSg SINE Alu -3 307 1 478 293 0 0 chrX 69398696 69398836 -107575304 - MLT1D LTR MaLR -118 387 248 223 169 0 34 chrX 69398958 69399017 -107575123 + CT-rich Low_complexity Low_complexity 1 57 0 546 290 35 18 chrX 69399051 69399220 -107574920 + MER5B DNA MER1_type 6 177 -1 346 287 47 33 chrX 69399222 69399372 -107574768 + L2 LINE L2 2164 2315 -999 686 229 133 0 chrX 69399951 69400117 -107574023 + MER5A DNA MER1_type 2 189 0 280 244 53 60 chrX 69400740 69400904 -107573236 - MIR SINE MIR -56 206 45 22 56 0 0 chrX 69401210 69401246 -107572894 + AT_rich Low_complexity Low_complexity 1 36 0 17878 90 3 3 chrX 69401505 69404813 -107569327 - L1PA7 LINE L1 -4 6150 2831 24 32 0 0 chrX 69404850 69404881 -107569259 + AT_rich Low_complexity Low_complexity 1 31 0 17005 134 14 29 chrX 69404919 69407790 -107566350 - L1PA7 LINE L1 -3306 2840 11 877 253 35 8 chrX 69407907 69408168 -107565972 + L1MB7 LINE L1 5907 6174 -10 276 100 0 0 chrX 69408262 69408302 -107565838 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 2250 213 69 2 chrX 69408303 69408857 -107565283 + L1MA9 LINE L1 5627 6217 -95 2641 114 43 14 chrX 69409084 69409505 -107564635 - MER57B LTR ERV1 0 434 2 726 108 137 6 chrX 69409506 69409710 -107564430 - MER57B-int LTR ERV1 0 7537 7279 486 181 23 68 chrX 69409710 69409843 -107564297 - LTR54B LTR ERV1 -367 131 5 16023 127 16 4 chrX 69409845 69412291 -107561849 - MER57B-int LTR ERV1 -389 7148 4674 7778 17 0 0 chrX 69412291 69413381 -107560759 + L1PA2 LINE L1 5063 6152 -3 1078 274 70 38 chrX 69413422 69414021 -107560119 + L1MC4 LINE L1 7240 7857 -185 5808 82 24 0 chrX 69414329 69415113 -107559027 - L1PA7 LINE L1 0 6154 5352 * 6965 30 0 0 chrX 69415111 69415939 -107558201 + L1P LINE L1 4130 4957 -1189 1316 69 14 34 chrX 69415933 69416024 -107558116 - L1PA3 LINE L1 -695 5460 5369 * 6063 19 0 0 chrX 69416024 69416713 -107557427 + L1PA3 LINE L1 5465 6155 0 1316 69 14 34 chrX 69416713 69416725 -107557415 - L1P1 LINE L1 -786 5369 5358 7551 26 6 0 chrX 69416725 69417929 -107556211 + L1PA4 LINE L1 4942 6150 -5 1316 69 14 34 chrX 69417929 69418075 -107556065 - L1P1 LINE L1 -797 5358 5214 5833 102 1 7 chrX 69418076 69418962 -107555178 + L1P LINE L1 3073 3953 -2193 401 324 36 14 chrX 69419151 69419290 -107554850 + MER5A DNA MER1_type 47 188 -1 271 414 7 14 chrX 69419405 69419545 -107554595 + MER5A DNA MER1_type 2 140 -49 284 68 0 23 chrX 69421064 69421110 -107553030 + (TG)n Simple_repeat Simple_repeat 1 87 0 284 68 0 23 chrX 69421110 69421154 -107552986 + (TG)n Simple_repeat Simple_repeat 2 44 0 422 268 5 98 chrX 69421444 69421638 -107552502 - MIR3 SINE MIR -8 200 25 405 263 11 141 chrX 69421786 69422049 -107552091 - MIR SINE MIR -2 260 30 324 234 117 32 chrX 69422484 69422672 -107551468 - L1ME4a LINE L1 -217 5904 5701 6039 86 1 0 chrX 69422701 69424166 -107549974 - L1PA7 LINE L1 -2 6152 4536 10546 89 9 2 chrX 69424166 69425663 -107548477 + L1PA7 LINE L1 3030 4536 -1610 298 262 29 10 chrX 69425667 69425770 -107548370 - L1ME4a LINE L1 -462 5659 5555 186 118 0 0 chrX 69426048 69426082 -107548058 + (ATG)n Simple_repeat Simple_repeat 2 35 0 208 232 43 72 chrX 69426126 69426195 -107547945 - MIR SINE MIR -115 93 27 4162 142 19 11 chrX 69426619 69427351 -107546789 - L1MA4A LINE L1 0 6303 5566 21 36 0 0 chrX 69427531 69427559 -107546581 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chrX 69428768 69428795 -107545345 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chrX 69430229 69430256 -107543884 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 822 130 0 0 chrX 69431652 69431783 -107542357 + (CA)n Simple_repeat Simple_repeat 2 132 0 315 335 107 13 chrX 69431847 69432071 -107542069 + MARNA DNA Mariner 143 387 -199 1121 241 7 33 chrX 69432437 69432849 -107541291 - L1MDa LINE L1 -6053 487 21 1674 263 29 0 chrX 69432861 69433280 -107540860 - L2 LINE L2 -978 2336 1906 401 310 174 19 chrX 69433366 69433389 -107540751 - L3 LINE CR1 -15 1562 1544 2389 137 65 10 chrX 69433389 69433791 -107540349 + MSTA LTR MaLR 3 426 -2 401 310 174 19 chrX 69433791 69433980 -107540160 - L3 LINE CR1 -33 1544 1317 387 148 31 16 chrX 69435013 69435141 -107538999 + (TA)n Simple_repeat Simple_repeat 1 130 0 8001 118 55 17 chrX 69435175 69436566 -107537574 - MER4A-int LTR ERV1 -1244 5354 3912 2726 132 84 11 chrX 69436552 69437111 -107537029 - MER4A-int LTR ERV1 -3268 3330 2731 * 1890 170 0 3 chrX 69437115 69437404 -107536736 + AluSq SINE Alu 1 288 -25 1179 175 83 12 chrX 69437424 69437664 -107536476 + LTR8 LTR ERV1 1 257 -434 6609 142 85 38 chrX 69437664 69438123 -107536017 - MER4A-int LTR ERV1 -4103 2495 2059 2189 114 0 0 chrX 69438123 69438413 -107535727 - AluSc SINE Alu -19 290 1 6609 142 85 38 chrX 69438413 69439270 -107534870 - MER4A-int LTR ERV1 -4539 2059 1104 444 51 0 0 chrX 69439270 69439329 -107534811 + (CA)n Simple_repeat Simple_repeat 2 60 0 6609 142 85 38 chrX 69439329 69439447 -107534693 - MER4A-int LTR ERV1 -5494 1104 993 252 145 29 101 chrX 69439521 69439590 -107534550 - MER4A-int LTR ERV1 -5848 750 687 2653 101 86 14 chrX 69439624 69440266 -107533874 - MER4A-int LTR ERV1 -5792 806 1 1762 162 3 22 chrX 69440269 69440621 -107533519 - MER4A LTR ERV1 0 664 261 546 95 42 11 chrX 69440621 69440716 -107533424 - MER4A LTR ERV1 -566 98 1 * 1372 234 97 64 chrX 69440716 69441167 -107532973 + MLT1D LTR MaLR 40 505 0 1382 165 43 81 chrX 69442176 69442323 -107531817 - MER41C LTR ERV1 0 554 403 1727 184 0 32 chrX 69442323 69442639 -107531501 + AluSx SINE Alu 1 306 -6 1382 165 43 81 chrX 69442639 69442813 -107531327 - MER41C LTR ERV1 -151 403 245 23266 43 0 0 chrX 69442816 69446469 -107527671 - L1PA4 LINE L1 -1 6154 2500 1066 181 33 9 chrX 69496488 69496676 -107477464 + Tigger1 DNA MER2_type 926 1118 -1300 373 100 4 65 chrX 69496676 69496767 -107477373 - MLT2A1 LTR ERVL 0 453 399 257 0 30 0 chrX 69496807 69496840 -107477300 + (TA)n Simple_repeat Simple_repeat 2 35 0 515 97 0 75 chrX 69496869 69496962 -107477178 - Tigger1 DNA MER2_type -608 1810 1725 2704 97 21 8 chrX 69496981 69497354 -107476786 - MLT2A1 LTR ERVL -66 378 1 7599 153 15 14 chrX 69497358 69498634 -107475506 + Tigger1 DNA MER2_type 1113 2389 -29 1291 236 31 8 chrX 69498826 69499212 -107474928 - L1 LINE L1 -1603 4543 4149 29 47 0 0 chrX 69499265 69499308 -107474832 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chrX 69499403 69499434 -107474706 + AT_rich Low_complexity Low_complexity 1 31 0 648 240 189 14 chrX 69499442 69499813 -107474327 + Zaphod DNA AcHobo 3595 4030 -1 520 291 66 96 chrX 69500522 69500979 -107473161 - MLT1H LTR MaLR -12 537 95 2479 147 17 2 chrX 69500998 69501405 -107472735 - L1MA1 LINE L1 -292 6010 5598 600 283 74 0 chrX 69501411 69501655 -107472485 - L1MDb LINE L1 -5261 1148 887 225 65 0 0 chrX 69501750 69501781 -107472359 + (CA)n Simple_repeat Simple_repeat 1 31 0 3393 224 27 0 chrX 69501796 69502462 -107471678 - ERVL LTR ERVL -893 4871 4188 1888 224 13 3 chrX 69502466 69502855 -107471285 - ERVL LTR ERVL -1692 4072 3680 1500 254 57 8 chrX 69502853 69503207 -107470933 - ERVL LTR ERVL -2343 3421 3051 * 1385 221 96 19 chrX 69503227 69503276 -107470864 - MLT2C1 LTR ERVL 0 397 353 333 0 0 0 chrX 69503276 69503313 -107470827 + (CA)n Simple_repeat Simple_repeat 2 38 0 1385 221 96 19 chrX 69503313 69503629 -107470511 - MLT2C1 LTR ERVL -44 353 4 1874 149 214 8 chrX 69503629 69503984 -107470156 - MSTA LTR MaLR 0 428 1 2915 217 42 47 chrX 69504649 69505653 -107468487 - Charlie1a DNA MER1_type 0 1455 457 1068 175 21 0 chrX 69505665 69505854 -107468286 + L1PB1 LINE L1 3 195 -6668 13330 209 23 11 chrX 69505859 69511744 -107462396 + L1PB1 LINE L1 636 6824 -43 1400 290 35 20 chrX 69511986 69512331 -107461809 - Charlie1a DNA MER1_type -2291 470 115 1749 198 55 9 chrX 69512331 69512679 -107461461 - MLT1A1 LTR MaLR -1 364 1 1400 290 35 20 chrX 69512679 69512785 -107461355 - Charlie1a DNA MER1_type -2646 115 12 569 309 58 21 chrX 69513576 69513819 -107460321 - MIR SINE MIR -9 253 2 189 299 24 94 chrX 69513819 69513939 -107460201 + L2 LINE L2 2948 3058 -214 3928 251 28 7 chrX 69514138 69515611 -107458529 + L1M1 LINE L1 12 2203 -5362 5819 160 19 8 chrX 69515628 69516653 -107457487 - L1MA3 LINE L1 0 6305 5270 818 78 43 0 chrX 69516653 69516768 -107457372 + THE1C LTR MaLR 3 122 -253 330 169 15 0 chrX 69516772 69516837 -107457303 + MER52A LTR ERV1 1 66 -1689 6308 206 68 78 chrX 69517613 69519233 -107454907 + MER52A LTR ERV1 153 1755 0 3526 116 25 71 chrX 69519235 69519830 -107454310 + MER52A-int LTR ERV1 4 571 -6520 9355 142 27 8 chrX 69519967 69521381 -107452759 + MER52A-int LTR ERV1 1761 3200 -3891 5310 152 20 26 chrX 69521382 69522317 -107451823 + MER52A-int LTR ERV1 717 1791 -5414 764 166 40 33 chrX 69522379 69522530 -107451610 + MER52A-int LTR ERV1 990 1141 -4805 1834 152 13 3 chrX 69522542 69522845 -107451295 + MER52A-int LTR ERV1 1977 2282 -3981 1503 150 42 29 chrX 69522843 69523150 -107450990 + MER52A-int LTR ERV1 2688 2998 -2948 * 1400 196 262 14 chrX 69523128 69523552 -107450588 + MER52A-int LTR ERV1 4187 4715 -1231 * 456 113 28 0 chrX 69523536 69523607 -107450533 + MER52A-int LTR ERV1 5425 5497 -449 * 1277 156 5 0 chrX 69523594 69523793 -107450347 + MER52A-int LTR ERV1 6892 7091 0 291 219 31 0 chrX 69523793 69523857 -107450283 + MER52A LTR ERV1 1 66 -1689 4028 240 49 98 chrX 69524646 69525842 -107448298 + MER52A LTR ERV1 56 1137 -618 1996 183 33 25 chrX 69525842 69526203 -107447937 - THE1B LTR MaLR 0 364 1 4028 240 49 98 chrX 69526203 69526790 -107447350 + MER52A LTR ERV1 1137 1751 -4 1641 133 24 0 chrX 69526793 69527041 -107447099 + THE1C LTR MaLR 122 375 0 9184 142 32 36 chrX 69527041 69528628 -107445512 + THE1C-int LTR MaLR 1 1580 0 2393 140 11 3 chrX 69528628 69529000 -107445140 + THE1C LTR MaLR 1 375 0 615 189 63 29 chrX 69529071 69529246 -107444894 - L1P5 LINE L1 -621 5535 5355 * 1604 226 7 20 chrX 69529222 69529668 -107444472 - L1 LINE L1 -904 6661 6222 410 131 0 40 chrX 69529668 69529767 -107444373 + (TA)n Simple_repeat Simple_repeat 1 95 0 255 103 0 0 chrX 69529806 69529845 -107444295 + L1 LINE L1 4752 4790 -1356 238 105 40 26 chrX 69529914 69529990 -107444150 + (TA)n Simple_repeat Simple_repeat 2 78 0 858 221 21 5 chrX 69530003 69530193 -107443947 + L1 LINE L1 4060 4252 -1894 * 3137 222 36 14 chrX 69530191 69531032 -107443108 - L1 LINE L1 -1532 6033 5175 556 242 0 0 chrX 69531015 69531143 -107442997 - L1PA16 LINE L1 -16 6150 6023 * 5102 176 27 7 chrX 69531145 69532498 -107441642 - L1PA15 LINE L1 -3 6162 4784 3361 179 24 29 chrX 69532542 69533459 -107440681 - L1 LINE L1 -3782 3783 2867 1790 177 19 0 chrX 69533459 69533821 -107440319 + L1MA3 LINE L1 5937 6305 0 22 0 0 0 chrX 69533850 69533872 -107440268 + AT_rich Low_complexity Low_complexity 1 22 0 281 376 107 24 chrX 69533896 69534186 -107439954 - L2 LINE L2 -175 3138 2825 1760 153 53 20 chrX 69534202 69534503 -107439637 + AluSx SINE Alu 1 311 -1 227 326 116 0 chrX 69534626 69534712 -107439428 + L2 LINE L2 3210 3305 -8 2228 226 15 8 chrX 69535932 69536459 -107437681 - L1MC3 LINE L1 -26 7759 7229 8970 218 52 15 chrX 69536473 69538200 -107435940 - L1 LINE L1 -1329 5021 3360 1314 233 45 0 chrX 69538200 69538370 -107435770 - AluJb SINE Alu -9 303 113 240 35 0 0 chrX 69538370 69538399 -107435741 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1314 233 45 0 chrX 69538399 69538516 -107435624 - AluJb SINE Alu -199 113 3 8970 218 52 15 chrX 69538516 69539077 -107435063 - L1 LINE L1 -2990 3360 2821 2360 157 29 5 chrX 69539077 69539492 -107434648 + MSTA LTR MaLR 1 425 -3 8122 199 35 12 chrX 69539495 69541028 -107433112 + MSTA-int LTR MaLR 1 1574 -77 2115 139 0 3 chrX 69541028 69541331 -107432809 + AluSp SINE Alu 1 302 -11 8122 199 35 12 chrX 69541331 69541411 -107432729 + MSTA-int LTR MaLR 1574 1651 0 2207 187 29 5 chrX 69541411 69541829 -107432311 + MSTA LTR MaLR 1 428 0 8970 218 52 15 chrX 69541829 69541983 -107432157 - L1 LINE L1 -3529 2821 2482 3093 282 47 42 chrX 69542002 69542828 -107431312 - L1 LINE L1 -3978 2372 1551 1604 218 7 7 chrX 69542828 69543136 -107431004 - AluJb SINE Alu -2 310 3 3093 282 47 42 chrX 69543136 69544425 -107429715 - L1 LINE L1 -4799 1551 566 2240 278 38 51 chrX 69544442 69545206 -107428934 - L1 LINE L1 -5519 762 9 3876 230 36 43 chrX 69545227 69546404 -107427736 - L1MC3 LINE L1 -1047 6738 5571 42928 30 21 1 chrX 69546412 69552443 -107421697 - L1HS LINE L1 0 6155 1 531 206 58 58 chrX 69552442 69552597 -107421543 - L1MC3 LINE L1 -2202 5583 5429 * 245 333 11 54 chrX 69552880 69552973 -107421167 - L2 LINE L2 -10 3262 3174 25 51 0 0 chrX 69553201 69553240 -107420900 + AT_rich Low_complexity Low_complexity 1 39 0 7420 33 2 1 chrX 69554974 69555872 -107418268 - L1PA4 LINE L1 -3 6152 5254 611 217 0 0 chrX 69556167 69556282 -107417858 + ERVL LTR ERVL 3076 3190 -2574 2137 121 3 3 chrX 69556286 69556599 -107417541 + AluSq SINE Alu 1 313 0 1329 236 0 8 chrX 69556635 69556898 -107417242 + ERVL LTR ERVL 3185 3445 -2319 3186 62 65 2 chrX 69557438 69557815 -107416325 + MLT2A1 LTR ERVL 1 353 -91 297 0 0 0 chrX 69557815 69557848 -107416292 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 531 0 0 0 chrX 69557847 69557906 -107416234 + (TA)n Simple_repeat Simple_repeat 1 59 0 3186 62 65 2 chrX 69557848 69557946 -107416194 + MLT2A1 LTR ERVL 353 444 0 244 184 20 0 chrX 69559141 69559190 -107414950 - MLT1F LTR MaLR -3 539 490 260 143 0 0 chrX 69559411 69559453 -107414687 + L1MB7 LINE L1 6131 6172 -12 252 0 0 0 chrX 69559456 69559484 -107414656 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7498 30 0 0 chrX 69559484 69561106 -107413034 - L1PA3 LINE L1 -18 6137 4514 622 303 56 6 chrX 69561124 69561302 -107412838 - MLT1E LTR MaLR -37 556 370 217 357 113 35 chrX 69561356 69562022 -107412118 + L2 LINE L2 1366 2083 -1231 1072 237 83 3 chrX 69562080 69562418 -107411722 + L1MD3 LINE L1 6913 7277 -718 574 228 31 0 chrX 69562419 69562546 -107411594 + MLT1F1 LTR MaLR 1 131 -436 1693 224 71 18 chrX 69562546 69562998 -107411142 + L1MD3 LINE L1 7408 7883 -112 346 341 24 0 chrX 69563050 69563173 -107410967 + L2 LINE L2 2154 2279 -1035 249 194 0 32 chrX 69563188 69563250 -107410890 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 27 49 0 0 chrX 69563455 69563496 -107410644 + AT_rich Low_complexity Low_complexity 1 41 0 394 338 62 7 chrX 69564611 69564756 -107409384 - MIR3 SINE MIR -21 187 35 1080 71 0 0 chrX 69565087 69565228 -107408912 - L1PA7 LINE L1 -5 6149 6009 9090 67 10 12 chrX 69565242 69565719 -107408421 - L1PA7 LINE L1 -345 5809 5332 2334 106 0 0 chrX 69565719 69566030 -107408110 - AluY SINE Alu 0 311 1 9090 67 10 12 chrX 69566030 69567253 -107406887 - L1PA7 LINE L1 -822 5332 4109 5996 106 24 2 chrX 69567253 69568319 -107405821 + L1PA12 LINE L1 5079 6167 -1 470 294 50 31 chrX 69569126 69569286 -107404854 - MIR3 SINE MIR -25 183 21 24 32 0 0 chrX 69570065 69570096 -107404044 + AT_rich Low_complexity Low_complexity 1 31 0 3144 194 16 10 chrX 69570126 69570388 -107403752 - L1MB7 LINE L1 0 6184 5925 1562 226 18 9 chrX 69570388 69570729 -107403411 + MER2 DNA MER2_type 1 344 0 3144 194 16 10 chrX 69570729 69571161 -107402979 - L1MB7 LINE L1 -259 5925 5486 4788 226 109 76 chrX 69571227 69571438 -107402702 - L1MB7 LINE L1 -687 5468 5266 2393 81 3 0 chrX 69571438 69571735 -107402405 - AluSp SINE Alu -15 298 1 4788 226 109 76 chrX 69571735 69574094 -107400046 - L1MB7 LINE L1 -889 5266 2762 245 255 41 61 chrX 69574164 69574262 -107399878 + MIR SINE MIR 96 191 -71 18499 175 33 19 chrX 69574401 69574481 -107399659 + L1MA3 LINE L1 14 91 -7474 180 0 0 0 chrX 69574481 69574501 -107399639 + (CA)n Simple_repeat Simple_repeat 2 21 0 18499 175 33 19 chrX 69574501 69578939 -107395201 + L1MA3 LINE L1 91 4464 -3101 2022 149 7 3 chrX 69578939 69579248 -107394892 - AluSx SINE Alu 0 312 3 18499 175 33 19 chrX 69579248 69579774 -107394366 + L1MA3 LINE L1 4464 4981 -2584 1820 158 133 21 chrX 69579774 69580159 -107393981 - MSTA LTR MaLR 0 428 1 18499 175 33 19 chrX 69580159 69581080 -107393060 + L1MA3 LINE L1 4981 6078 -1487 5325 65 32 0 chrX 69581080 69581774 -107392366 + LTR30 LTR ERV1 1 716 -6 5759 87 5 6 chrX 69581778 69582564 -107391576 + HERV30 LTR ERV1 1 785 -7472 * 14357 148 17 25 chrX 69582563 69583320 -107390820 + HERV30 LTR ERV1 3985 4746 -3511 2895 16 0 0 chrX 69583320 69583638 -107390502 - AluYb8 SINE Alu 0 318 1 14357 148 17 25 chrX 69583638 69583747 -107390393 + HERV30 LTR ERV1 4746 4854 -3403 180 0 0 0 chrX 69583747 69583767 -107390373 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 14357 148 17 25 chrX 69583767 69584613 -107389527 + HERV30 LTR ERV1 4854 5677 -2580 1726 38 9 0 chrX 69584613 69584826 -107389314 - L1PA4 LINE L1 -2 6153 5939 14357 148 17 25 chrX 69584826 69585544 -107388596 + HERV30 LTR ERV1 5677 6399 -1858 11168 116 7 2 chrX 69585528 69587159 -107386981 + HERV30 LTR ERV1 6619 8257 0 * 5424 54 31 0 chrX 69587159 69587857 -107386283 + LTR30 LTR ERV1 1 720 -2 5837 180 22 5 chrX 69587860 69589475 -107384665 + L1MA3 LINE L1 6076 7721 -3 1917 132 54 0 chrX 69589741 69590037 -107384103 + AluSx SINE Alu 1 312 0 2088 109 0 3 chrX 69591011 69591340 -107382800 + AluSx SINE Alu 1 328 0 265 235 10 41 chrX 69592679 69592777 -107381363 + LTR37B LTR ERV1 198 292 -176 22 35 0 0 chrX 69592860 69592889 -107381251 + AT_rich Low_complexity Low_complexity 1 29 0 693 157 0 0 chrX 69593132 69593240 -107380900 - L1P LINE L1 -1923 4223 4116 5135 205 11 10 chrX 69593250 69594946 -107379194 + L1PA16 LINE L1 4090 5784 -382 2120 148 46 34 chrX 69594946 69595490 -107378650 - MLT2A2 LTR ERVL 0 554 2 1826 191 27 5 chrX 69595490 69595866 -107378274 + L1PA16 LINE L1 5783 6166 0 34559 45 2 0 chrX 69596377 69601474 -107372666 - L1PA4 LINE L1 -2 6153 1049 4536 252 32 31 chrX 69601828 69604120 -107370020 + L1PB3 LINE L1 3 1429 -5434 273 98 0 0 chrX 69604120 69604161 -107369979 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 4536 252 32 31 chrX 69604161 69604378 -107369762 + L1PB3 LINE L1 1429 1644 -5219 761 99 9 0 chrX 69604378 69604489 -107369651 + L1PA8 LINE L1 6053 6164 -8 245 384 0 0 chrX 69604489 69604635 -107369505 + L1 LINE L1 2774 2919 -3227 * 2474 241 37 36 chrX 69604622 69604875 -107369265 + L1PB3 LINE L1 3391 3642 -3220 2344 81 0 0 chrX 69604875 69605170 -107368970 + AluY SINE Alu 1 295 -16 2474 241 37 36 chrX 69605170 69605860 -107368280 + L1PB3 LINE L1 3642 4335 -2527 2018 142 60 26 chrX 69605861 69606213 -107367927 + THE1B LTR MaLR 1 364 0 8491 132 9 2 chrX 69606213 69607468 -107366672 + THE1B-int LTR MaLR 1 1263 -317 246 200 20 0 chrX 69607469 69607519 -107366621 + THE1A LTR MaLR 304 354 -1 5319 212 52 12 chrX 69607524 69609949 -107364191 + L1PB3 LINE L1 4336 6867 -3 226 65 22 22 chrX 69610141 69610187 -107363953 + (CAAAA)n Simple_repeat Simple_repeat 3 48 0 1936 112 10 0 chrX 69610525 69610820 -107363320 + L1PA13 LINE L1 5866 6163 0 213 337 57 12 chrX 69610997 69611084 -107363056 + MIR SINE MIR 53 144 -64 821 298 71 71 chrX 69611641 69611925 -107362215 - MLT1K LTR MaLR -6 582 296 2290 140 22 6 chrX 69611925 69612283 -107361857 + THE1B LTR MaLR 1 364 0 821 298 71 71 chrX 69612283 69612478 -107361662 - MLT1K LTR MaLR -291 297 103 254 250 0 0 chrX 69612951 69613047 -107361093 - L1M4 LINE L1 -1709 4437 4342 1052 271 10 29 chrX 69613090 69613474 -107360666 - L1M4 LINE L1 -1790 4356 3980 305 352 145 11 chrX 69614514 69614693 -107359447 - L3 LINE CR1 -14 1563 1361 238 261 43 0 chrX 69614744 69614813 -107359327 + MIR SINE MIR 43 114 -148 739 287 49 20 chrX 69615295 69615539 -107358601 - MIR SINE MIR -9 253 3 1919 181 18 3 chrX 69615899 69616242 -107357898 + MER7A DNA MER2_type 1 346 0 2260 146 8 22 chrX 69616470 69616839 -107357301 + THE1B LTR MaLR 1 364 0 11517 104 1 1 chrX 69616840 69618418 -107355722 + THE1B-int LTR MaLR 2 1580 0 2231 129 5 30 chrX 69618418 69618789 -107355351 + THE1B LTR MaLR 1 362 -2 569 340 33 14 chrX 69619412 69619627 -107354513 + MIR SINE MIR 38 256 -6 331 355 9 0 chrX 69619928 69620038 -107354102 - MIR SINE MIR -58 150 40 191 303 79 40 chrX 69620404 69620480 -107353660 + L2 LINE L2 3186 3264 -8 223 160 40 0 chrX 69620732 69620782 -107353358 + T-rich Low_complexity Low_complexity 1 52 0 7619 26 0 0 chrX 69620782 69622104 -107352036 - L1PA3 LINE L1 -3 6152 4828 4095 162 22 9 chrX 69622104 69622878 -107351262 - L1MA3 LINE L1 -19 6286 5500 1928 192 8 0 chrX 69622883 69623466 -107350674 + L1MA3 LINE L1 4945 5531 -743 198 273 0 0 chrX 69623674 69623729 -107350411 - MIR SINE MIR -40 222 168 2404 171 12 39 chrX 69623824 69624009 -107350131 - L1PA16 LINE L1 -2 6164 5976 2224 111 16 0 chrX 69624009 69624316 -107349824 - AluSx SINE Alu 0 312 1 2404 171 12 39 chrX 69624316 69624616 -107349524 - L1PA16 LINE L1 -190 5976 5692 279 353 22 10 chrX 69624619 69624789 -107349351 - MIR SINE MIR -62 146 8 1547 191 132 16 chrX 69625104 69625545 -107348595 - LTR54B LTR ERV1 -6 492 1 410 368 27 11 chrX 69625658 69625843 -107348297 + MIR SINE MIR 8 195 -67 1544 226 30 36 chrX 69625844 69626206 -107347934 + MLT1A1 LTR MaLR 1 360 -5 258 136 0 0 chrX 69626311 69626355 -107347785 + (ATG)n Simple_repeat Simple_repeat 3 46 0 4353 118 4 4 chrX 69827084 69828154 -107145986 - L1PA11 LINE L1 -329 5845 4777 1875 77 0 0 chrX 69828262 69828510 -107145630 - L1PA12 LINE L1 -337 5831 5584 1956 174 14 25 chrX 69828816 69829183 -107144957 - THE1B LTR MaLR 0 364 2 259 239 248 9 chrX 69830519 69830628 -107143512 - L2 LINE L2 -12 3301 3167 781 226 14 14 chrX 69831528 69831736 -107142404 + L1MB1 LINE L1 5961 6168 0 6644 73 6 0 chrX 69832067 69833383 -107140757 + L1PA7 LINE L1 4827 6147 -7 7158 226 39 13 chrX 69833388 69835213 -107138927 + L1 LINE L1 2378 4256 -1890 2052 107 7 0 chrX 69835213 69835485 -107138655 + AluSc SINE Alu 1 274 -35 7158 226 39 13 chrX 69835485 69835603 -107138537 + L1 LINE L1 4256 4370 -1776 1397 188 53 16 chrX 69835712 69836031 -107138109 + L1MC/D LINE L1 5418 5748 -585 4995 229 42 23 chrX 69836039 69838226 -107135914 + L1MA4 LINE L1 77 2305 -4023 271 82 180 49 chrX 69838240 69838301 -107135839 + L1P3 LINE L1 511 579 -5882 * 4471 111 7 4 chrX 69838268 69838943 -107135197 + L1P LINE L1 4363 5039 -1422 3827 191 61 8 chrX 69839053 69840272 -107133868 + L1MA4 LINE L1 4693 5976 -506 186 43 0 0 chrX 69840272 69840295 -107133845 + (TA)n Simple_repeat Simple_repeat 1 23 0 3827 191 61 8 chrX 69840295 69840370 -107133770 + L1MA4 LINE L1 5976 6046 -436 * 9035 230 28 44 chrX 69840343 69842411 -107131729 + L1M2c LINE L1 9 2108 -4680 2028 122 44 0 chrX 69842411 69842705 -107131435 + AluSx SINE Alu 3 309 -3 9035 230 28 44 chrX 69842705 69843484 -107130656 + L1M2c LINE L1 2108 2785 -4003 2280 100 0 0 chrX 69843484 69843774 -107130366 + AluSq SINE Alu 1 290 -23 9035 230 28 44 chrX 69843774 69844339 -107129801 + L1M2c LINE L1 2785 3357 -3431 10070 166 39 5 chrX 69844439 69845335 -107128805 - L1PBb LINE L1 -1523 4680 3816 252 0 0 0 chrX 69845335 69845363 -107128777 + (TTG)n Simple_repeat Simple_repeat 3 30 0 10070 166 39 5 chrX 69845363 69846388 -107127752 - L1PBb LINE L1 -2387 3816 2694 3532 257 40 35 chrX 69846385 69846510 -107127630 - L1PA12 LINE L1 -6506 1075 952 * 2344 70 3 3 chrX 69846510 69846810 -107127330 + AluY SINE Alu 1 300 -11 3532 257 40 35 chrX 69846810 69847744 -107126396 - L1PA12 LINE L1 -6629 952 11 4934 145 50 21 chrX 69847754 69849078 -107125062 - L1PBb LINE L1 -4225 1979 625 12771 197 17 48 chrX 69849097 69850167 -107123973 + L1PA13 LINE L1 2086 3187 -2976 387 41 0 0 chrX 69850167 69850216 -107123924 + (CA)n Simple_repeat Simple_repeat 2 50 0 12771 197 17 48 chrX 69850216 69853360 -107120780 + L1PA13 LINE L1 3187 6161 -2 6834 206 27 8 chrX 69853348 69855027 -107119113 + L1M2c LINE L1 3535 5244 -1544 * 20690 30 0 0 chrX 69855127 69858411 -107115729 + L1PA2 LINE L1 2902 6185 0 1325 254 25 3 chrX 69858411 69858777 -107115363 - MSTB-int LTR MaLR -1277 374 1 1720 238 47 7 chrX 69858777 69859185 -107114955 - MSTB LTR MaLR 0 426 3 2331 214 75 10 chrX 69859724 69860234 -107113906 + L1PA15-16 LINE L1 1300 1842 -5007 8952 263 22 31 chrX 69860286 69861524 -107112616 + L1PA15-16 LINE L1 2409 3657 -3192 1923 159 0 0 chrX 69861524 69861807 -107112333 + AluSx SINE Alu 1 283 -29 313 122 0 0 chrX 69861807 69861853 -107112287 + AluYb8 SINE Alu 1 329 0 8952 263 22 31 chrX 69861853 69864229 -107109911 + L1PA15-16 LINE L1 3657 5985 -864 1844 230 61 34 chrX 69864389 69864877 -107109263 + L1PA12 LINE L1 10 513 -7068 5610 132 12 14 chrX 69864877 69866107 -107108033 + L1PA11 LINE L1 4942 6171 -3 4219 233 40 23 chrX 69866111 69867352 -107106788 + L1MA1 LINE L1 3138 4400 -1746 736 302 41 54 chrX 69867354 69867669 -107106471 + L1M3b LINE L1 2 312 -5969 6349 154 25 26 chrX 69867769 69869439 -107104701 + L1MA1 LINE L1 4628 6302 0 1041 205 0 10 chrX 69869499 69869704 -107104436 + MLT1B LTR MaLR 188 390 0 792 349 58 52 chrX 69870343 69870510 -107103630 - L2 LINE L2 -341 2973 2809 1457 168 49 80 chrX 69870510 69870897 -107103243 - THE1C LTR MaLR 0 375 1 792 349 58 52 chrX 69870897 69871518 -107102622 - L2 LINE L2 -505 2809 2180 29 70 0 0 chrX 69871960 69872017 -107102123 + AT_rich Low_complexity Low_complexity 1 57 0 553 344 28 12 chrX 69873004 69873251 -107100889 - MLT1L LTR MaLR 0 615 365 1961 199 32 19 chrX 69873498 69873909 -107100231 + MSTB LTR MaLR 1 416 -10 1027 148 11 0 chrX 69873951 69874127 -107100013 + MSTB-int LTR MaLR 1 178 -1473 5363 188 142 22 chrX 69874139 69874307 -107099833 + MSTB-int LTR MaLR 321 467 -1184 2211 119 3 0 chrX 69874307 69874609 -107099531 - AluSp SINE Alu -8 305 3 5363 188 142 22 chrX 69874609 69875628 -107098512 + MSTB-int LTR MaLR 467 1651 0 2007 202 29 17 chrX 69875628 69875849 -107098291 + MSTB LTR MaLR 1 231 -195 180 0 0 0 chrX 69875849 69875869 -107098271 + (CA)n Simple_repeat Simple_repeat 1 20 0 2007 202 29 17 chrX 69875869 69876068 -107098072 + MSTB LTR MaLR 231 426 0 291 308 0 0 chrX 69876179 69876257 -107097883 + L2 LINE L2 3234 3311 -2 352 310 194 8 chrX 69876475 69876717 -107097423 - MLT1L LTR MaLR -33 582 296 1544 214 70 37 chrX 69876941 69877178 -107096962 - MSTB1 LTR MaLR -4 428 173 2266 71 0 10 chrX 69877178 69877475 -107096665 + AluY SINE Alu 13 306 -5 1544 214 70 37 chrX 69877475 69877611 -107096529 - MSTB1 LTR MaLR -259 173 43 4465 241 13 6 chrX 69877612 69878587 -107095553 - MSTB1-int LTR MaLR -312 1339 358 * 13679 51 71 4 chrX 69878585 69880396 -107093744 - L1P LINE L1 -4211 1935 3 5522 31 0 0 chrX 69880396 69881068 -107093072 + L1P LINE L1 1934 2605 -3541 205 320 21 10 chrX 69881941 69882038 -107092102 - MIR3 SINE MIR -30 178 81 298 211 0 7 chrX 69882748 69882835 -107091305 - L1MA8 LINE L1 -2 6289 6206 482 217 31 23 chrX 69882931 69883060 -107091080 + L1PA16 LINE L1 2787 2916 -3933 * 9856 225 24 18 chrX 69883059 69886598 -107087542 + L1PA16 LINE L1 3275 6868 -1 3169 183 15 51 chrX 69886600 69887343 -107086797 - L1MA8 LINE L1 -65 6226 5511 2150 229 33 26 chrX 69887388 69887934 -107086206 - MER74A LTR ERVL -1 557 8 847 256 191 45 chrX 69887934 69888352 -107085788 + L2 LINE L2 2388 2866 -448 330 285 146 14 chrX 69888352 69888496 -107085644 + L2 LINE L2 3143 3305 -8 1677 250 141 9 chrX 69888876 69889766 -107084374 + L1M1 LINE L1 3308 4328 -3237 616 185 0 25 chrX 69889766 69889885 -107084255 - MSTD LTR MaLR -280 116 1 5157 166 46 20 chrX 69889885 69890933 -107083207 + L1MA9 LINE L1 5235 6311 -1 32 0 0 0 chrX 69891426 69891458 -107082682 + AT_rich Low_complexity Low_complexity 1 32 0 431 207 69 28 chrX 69891471 69891616 -107082524 - L1MA3 LINE L1 -123 6182 6032 2224 187 19 8 chrX 69892259 69892735 -107081405 - L1MA4 LINE L1 -6 6294 5814 2705 147 20 2 chrX 69892737 69893227 -107080913 - L1MA5A LINE L1 -1 6296 5798 2110 69 0 0 chrX 69893227 69893502 -107080638 - L1PA4 LINE L1 -6 6149 5873 1959 214 53 14 chrX 69893502 69894063 -107080077 - L1 LINE L1 -2621 3525 2943 6191 215 24 29 chrX 70094085 70094592 -106879548 - L1 LINE L1 -897 5249 4741 2535 61 3 3 chrX 70094592 70094903 -106879237 - AluY SINE Alu 0 311 1 6191 215 24 29 chrX 70094903 70096077 -106878063 - L1 LINE L1 -1405 4741 3576 4871 196 7 9 chrX 70096226 70097258 -106876882 - L1P LINE L1 -868 5278 4249 4780 104 24 3 chrX 70097258 70097958 -106876182 + L1PA13 LINE L1 5438 6160 -3 2206 135 119 8 chrX 70098369 70098754 -106875386 - MSTA LTR MaLR 0 428 1 255 261 76 8 chrX 70099338 70099457 -106874683 - L1MC/D LINE L1 -1914 5894 5768 2503 225 61 5 chrX 70099470 70100109 -106874031 - L1MB7 LINE L1 -10 6672 5998 343 194 0 0 chrX 70100106 70100173 -106873967 - L1MB7 LINE L1 -1534 5110 5044 * 259 241 0 0 chrX 70100181 70100235 -106873905 - L1MB7 LINE L1 -5316 1226 1173 627 266 7 0 chrX 70100237 70100391 -106873749 - L1MB7 LINE L1 -6384 158 4 416 268 116 0 chrX 70100404 70100568 -106873572 - L1MC/D LINE L1 -2040 5768 5586 1111 225 13 5 chrX 70100592 70101062 -106873078 + ERVL-D LTR ERVL 5225 5757 -7 462 191 21 0 chrX 70101062 70101156 -106872984 + MLT2D LTR ERVL 1 96 -318 4120 158 30 0 chrX 70101181 70101890 -106872250 - L1PA15 LINE L1 -8 6157 5428 19035 115 14 0 chrX 70101897 70105598 -106868542 - L1PA7 LINE L1 -8 6461 2718 9264 85 1 52 chrX 70105599 70106994 -106867146 - L1PA7 LINE L1 -5134 1327 4 590 206 77 7 chrX 70107033 70107049 -106867091 - L1MA10 LINE L1 0 6334 6319 2345 227 65 48 chrX 70107049 70107843 -106866297 - L1ME1 LINE L1 -7 6228 5421 440 264 88 0 chrX 70107878 70108060 -106866080 - L1ME1 LINE L1 -886 5329 5132 1168 207 4 22 chrX 70108062 70108289 -106865851 + Tigger5 DNA MER2_type 1 223 -2100 4810 247 66 26 chrX 70108332 70110078 -106864062 - L1ME1 LINE L1 -1085 5130 3315 473 237 39 0 chrX 70110048 70110204 -106863936 - L1ME1 LINE L1 -3615 2600 2439 * 792 247 100 33 chrX 70110201 70110746 -106863394 - L1ME1 LINE L1 -4755 1641 973 2188 89 4 0 chrX 70110746 70111056 -106863084 - AluSg SINE Alu 0 311 1 792 247 100 33 chrX 70111056 70111308 -106862832 - L1ME1 LINE L1 -5423 973 739 260 262 0 0 chrX 70111438 70111499 -106862641 - L1M2 LINE L1 -4449 2400 2340 1110 289 85 21 chrX 70111545 70112670 -106861470 - L1PA15-16 LINE L1 -4702 1501 354 331 362 37 46 chrX 70112774 70113100 -106861040 - L1PA15-16 LINE L1 -5829 375 53 371 346 11 16 chrX 70113155 70113343 -106860797 - L1PBa LINE L1 -5249 1614 1428 349 356 83 46 chrX 70113311 70113814 -106860326 - L1PBa LINE L1 -6320 543 22 * 1374 249 118 29 chrX 70113831 70114245 -106859895 - MLT2B1 LTR ERVL -64 456 6 613 273 35 9 chrX 70114246 70114477 -106859663 + L1MB7 LINE L1 5890 6126 -58 8757 108 7 5 chrX 70114495 70116612 -106857528 - L1PA8 LINE L1 -1 6171 4055 2537 108 0 3 chrX 70116719 70117089 -106857051 + L1PB1 LINE L1 5782 6150 -1 231 88 0 0 chrX 70117296 70117330 -106856810 + (TG)n Simple_repeat Simple_repeat 1 34 0 309 170 0 0 chrX 70117346 70117399 -106856741 - L1MB1 LINE L1 -26 6163 6111 890 223 23 0 chrX 70117521 70117741 -106856399 + L1MA6 LINE L1 6071 6295 -5 973 35 0 0 chrX 70117922 70118038 -106856102 - L1P LINE L1 -1477 4669 4554 2045 166 43 24 chrX 70118038 70118178 -106855962 - L1MA9 LINE L1 -13 6299 6163 297 0 0 0 chrX 70118178 70118211 -106855929 + (TG)n Simple_repeat Simple_repeat 1 33 0 2045 166 43 24 chrX 70118211 70118539 -106855601 - L1MA9 LINE L1 -149 6163 5822 236 215 15 15 chrX 70118540 70118605 -106855535 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 719 155 17 33 chrX 70118618 70118798 -106855342 - L1M4 LINE L1 -370 5808 5636 7157 248 21 7 chrX 70118898 70120903 -106853237 - L1PA13 LINE L1 -1074 5723 3689 * 15107 216 32 25 chrX 70120892 70127657 -106846483 - L1PA13 LINE L1 -7 6807 1 4308 256 43 30 chrX 70127669 70127826 -106846314 - L1PA13 LINE L1 -3083 3714 3560 2173 109 13 7 chrX 70127826 70128130 -106846010 - AluSg SINE Alu -4 306 1 4308 256 43 30 chrX 70128130 70128269 -106845871 - L1PA13 LINE L1 -3237 3560 3424 288 0 0 0 chrX 70128269 70128301 -106845839 + (TTG)n Simple_repeat Simple_repeat 1 32 0 4308 256 43 30 chrX 70128301 70128662 -106845478 - L1PA13 LINE L1 -3373 3424 3069 1924 113 3 62 chrX 70128662 70128971 -106845169 - AluSq SINE Alu -9 304 14 4308 256 43 30 chrX 70128971 70129302 -106844838 - L1PA13 LINE L1 -3728 3069 2744 2185 116 6 0 chrX 70129302 70129613 -106844527 - AluSq SINE Alu 0 313 1 4308 256 43 30 chrX 70129613 70131061 -106843079 - L1PA13 LINE L1 -4053 2744 1232 1446 321 32 30 chrX 70131048 70131606 -106842534 - L1PA13 LINE L1 -6037 750 192 * 1081 319 97 58 chrX 70131900 70132593 -106841547 - L1M2 LINE L1 -5895 954 235 9780 196 21 12 chrX 70132620 70135895 -106838245 + L1PB1 LINE L1 2849 6150 -1 3567 240 78 19 chrX 70135900 70137180 -106836960 + L1 LINE L1 3975 5330 -816 2388 120 0 0 chrX 70137180 70137538 -106836602 + L1P3 LINE L1 1001 1358 -5103 186 133 0 0 chrX 70137542 70137572 -106836568 + (TATATG)n Simple_repeat Simple_repeat 6 35 0 330 283 0 22 chrX 70137572 70137664 -106836476 + L1MC4 LINE L1 6614 6703 -1339 230 156 0 0 chrX 70137675 70137720 -106836420 - LTR66 LTR ERVL -172 438 394 267 152 0 0 chrX 70137724 70137770 -106836370 + (TA)n Simple_repeat Simple_repeat 2 47 0 4241 125 14 4 chrX 70137771 70138477 -106835663 - L1P LINE L1 -2583 3563 2851 1056 122 0 0 chrX 70138477 70138641 -106835499 + (TA)n Simple_repeat Simple_repeat 1 164 0 13045 124 12 2 chrX 70138646 70140726 -106833414 + L1P LINE L1 2013 4114 -2032 912 135 0 0 chrX 70141373 70141521 -106832619 + (TA)n Simple_repeat Simple_repeat 1 148 0 20832 115 7 2 chrX 70141526 70145047 -106829093 + L1P3 LINE L1 2013 5558 -614 6012 175 13 20 chrX 70145039 70146993 -106827147 + L1PB2 LINE L1 3841 5807 -344 * 474 18 0 0 chrX 70146993 70147048 -106827092 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6012 175 13 20 chrX 70147048 70147071 -106827069 + L1PB2 LINE L1 5807 5829 -322 285 29 0 0 chrX 70147071 70147105 -106827035 + (CA)n Simple_repeat Simple_repeat 2 35 0 6012 175 13 20 chrX 70147105 70147457 -106826683 + L1PB2 LINE L1 5829 6149 -2 29 28 0 0 chrX 70147457 70147493 -106826647 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chrX 70147600 70147624 -106826516 + AT_rich Low_complexity Low_complexity 1 24 0 1981 196 81 7 chrX 70147624 70148069 -106826071 + L1PB4 LINE L1 5677 6154 -2 381 257 29 21 chrX 70148066 70148206 -106825934 + L1 LINE L1 5002 5142 -1004 * 243 0 0 0 chrX 70148251 70148278 -106825862 + (TA)n Simple_repeat Simple_repeat 1 27 0 303 28 0 0 chrX 70148348 70148384 -106825756 + (TG)n Simple_repeat Simple_repeat 2 37 0 1134 284 14 11 chrX 70148790 70149160 -106824980 + L1 LINE L1 1046 1416 -4865 4094 167 25 40 chrX 70149188 70150245 -106823895 - L1PA12 LINE L1 -4137 3447 2381 5547 124 8 7 chrX 70150246 70151980 -106822160 + L1PA14 LINE L1 4414 6148 -13 849 234 53 20 chrX 70151990 70152293 -106821847 + L1 LINE L1 1431 1743 -4538 3444 262 35 27 chrX 70152365 70154105 -106820035 + L1PBb LINE L1 749 2522 -3681 396 0 0 0 chrX 70154105 70154149 -106819991 + (TA)n Simple_repeat Simple_repeat 2 45 0 3444 262 35 27 chrX 70154149 70154644 -106819496 + L1PBb LINE L1 2522 3012 -3191 1632 263 129 54 chrX 70154656 70155336 -106818804 + L1PA10 LINE L1 9 1284 -6297 * 19107 171 17 6 chrX 70155324 70159828 -106814312 + L1PA10 LINE L1 3059 7606 0 496 253 19 53 chrX 70159826 70160091 -106814049 + L1 LINE L1 3146 3401 -2949 * 707 183 43 91 chrX 70160093 70160279 -106813861 + L1M1 LINE L1 12 188 -7377 1869 177 114 15 chrX 70160281 70160676 -106813464 - MER57B LTR ERV1 0 434 1 379 182 13 39 chrX 70160680 70160789 -106813351 - HERV3 LTR ERV1 -6 7531 7208 456 271 36 7 chrX 70160912 70161052 -106813088 - HERV3 LTR ERV1 -658 7158 7015 985 216 10 0 chrX 70162597 70162791 -106811349 - HERV3 LTR ERV1 -1357 6180 5985 436 328 28 31 chrX 70162942 70163259 -106810881 - HERV3 LTR ERV1 -4421 4005 3690 436 367 61 20 chrX 70163226 70163635 -106810505 - HERV3 LTR ERV1 -3827 2974 2549 22 0 0 0 chrX 70163770 70163792 -106810348 + AT_rich Low_complexity Low_complexity 1 22 0 5651 154 20 5 chrX 70164420 70165644 -106808496 + L1PB2 LINE L1 4908 6149 -2 2168 177 22 16 chrX 70165691 70166305 -106807835 + L1PB4 LINE L1 5070 5686 -470 358 260 10 30 chrX 70166306 70166406 -106807734 + AluJo SINE Alu 1 98 -204 2331 190 7 14 chrX 70166413 70166828 -106807312 + MSTB LTR MaLR 8 419 -7 650 259 88 6 chrX 70166833 70167003 -106807137 + AluJo SINE Alu 96 279 -33 691 50 20 10 chrX 70167004 70167104 -106807036 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 584 155 0 0 chrX 70167104 70167201 -106806939 + L1PB4 LINE L1 5678 5774 -382 282 237 0 0 chrX 70167240 70167337 -106806803 + (CA)n Simple_repeat Simple_repeat 2 98 0 1462 194 21 88 chrX 70167337 70167724 -106806416 + L1PB4 LINE L1 5796 6156 0 1763 175 29 35 chrX 70169105 70169482 -106804658 - THE1C LTR MaLR 0 375 1 28 29 0 0 chrX 70169483 70169518 -106804622 + AT_rich Low_complexity Low_complexity 1 35 0 244 157 0 0 chrX 70169571 70169622 -106804518 - L1MB3 LINE L1 -2 6181 6131 1161 166 62 27 chrX 70169636 70169895 -106804245 + L1MA9 LINE L1 6008 6275 -37 8329 257 37 19 chrX 70169920 70174209 -106799931 + L1PA7 LINE L1 1 4383 -2414 10309 117 7 2 chrX 70174223 70176532 -106797608 + L1PA7 LINE L1 4483 6797 -8 4120 158 30 0 chrX 70176539 70177248 -106796892 + L1PA15 LINE L1 5428 6157 -8 462 191 21 0 chrX 70177273 70177367 -106796773 - MLT2D LTR ERVL -318 96 1 1111 225 13 5 chrX 70177367 70177837 -106796303 - ERVL-D LTR ERVL -7 5757 5225 416 268 116 0 chrX 70177861 70178025 -106796115 + L1MC/D LINE L1 5586 5768 -2040 627 266 7 0 chrX 70178038 70178192 -106795948 + L1MB7 LINE L1 4 158 -6384 259 241 0 0 chrX 70178194 70178248 -106795892 + L1MB7 LINE L1 1173 1226 -5316 343 194 0 0 chrX 70178256 70178323 -106795817 + L1MB7 LINE L1 5044 5110 -1534 * 2503 225 61 5 chrX 70178320 70178959 -106795181 + L1MB7 LINE L1 5998 6672 -10 255 261 76 8 chrX 70178972 70179091 -106795049 + L1MC/D LINE L1 5768 5894 -1914 1004 132 54 6 chrX 70179664 70179831 -106794309 + MSTA LTR MaLR 1 175 -253 2099 114 0 0 chrX 70179831 70180146 -106793994 - AluSx SINE Alu 0 318 4 1088 133 0 0 chrX 70180146 70180297 -106793843 - AluSg/x SINE Alu -14 298 148 2871 261 65 53 chrX 70180298 70181472 -106792668 - L1MCb LINE L1 -4857 1188 1 198 103 0 0 chrX 70181621 70181650 -106792490 + (CTTA)n Simple_repeat Simple_repeat 3 31 0 816 203 33 0 chrX 70181650 70181803 -106792337 - FAM SINE Alu -17 158 1 357 325 74 16 chrX 70181810 70182053 -106792087 - L1ME4a LINE L1 0 6121 5865 295 276 0 13 chrX 70182232 70182308 -106791832 - L2 LINE L2 -1 3312 3238 449 263 88 32 chrX 70182372 70182555 -106791585 - L1M1 LINE L1 -399 5722 5546 364 314 0 10 chrX 70182575 70182677 -106791463 + L2 LINE L2 3171 3271 -1 638 282 29 0 chrX 70182741 70182911 -106791229 + MIR SINE MIR 13 187 -75 615 346 23 0 chrX 70183101 70183342 -106790798 + MIR SINE MIR 16 259 -3 294 368 92 11 chrX 70183588 70183773 -106790367 + L2 LINE L2 2860 3059 -213 205 283 232 0 chrX 70183838 70183937 -106790203 + L2 LINE L2 3184 3305 -8 217 218 26 90 chrX 70184420 70184498 -106789642 - L2 LINE L2 0 3272 3200 383 316 41 1 chrX 70184951 70185103 -106789037 + MIR SINE MIR 67 238 -24 249 299 15 0 chrX 70185173 70185240 -106788900 + MIR SINE MIR 76 143 -65 4423 111 9 8 chrX 70185627 70186260 -106787880 - MER4A LTR ERV1 0 664 31 436 302 38 19 chrX 70186381 70186540 -106787600 + MER5A DNA MER1_type 8 169 -20 1623 149 33 8 chrX 70186687 70187022 -106787118 - MER4A LTR ERV1 0 664 263 580 121 10 20 chrX 70187022 70187121 -106787019 - MER4A LTR ERV1 -566 98 1 622 137 0 0 chrX 70187137 70187232 -106786908 - MER4A-int LTR ERV1 -14 6584 6490 1238 129 155 52 chrX 70187232 70187541 -106786599 + MER4A LTR ERV1 1 341 -323 577 151 197 33 chrX 70187579 70187731 -106786409 + MER4C LTR ERV1 281 457 -8 740 192 75 43 chrX 70187743 70188276 -106785864 + MER4C-int LTR ERV1 1 671 -5927 289 313 31 62 chrX 70188300 70188428 -106785712 + MER4A-int LTR ERV1 369 492 -6266 251 204 0 0 chrX 70188641 70188685 -106785455 + MER4A-int LTR ERV1 751 794 -5804 269 317 40 30 chrX 70189342 70189541 -106784599 + MER4A-int LTR ERV1 1235 1435 -5366 2340 106 3 0 chrX 70190480 70190792 -106783348 - AluSq SINE Alu 0 313 1 491 319 76 46 chrX 70191305 70192888 -106781252 + MER4A-int LTR ERV1 2758 3884 -2917 630 339 46 44 chrX 70193504 70194224 -106779916 + MER4A-int LTR ERV1 2177 2897 -1750 344 291 0 0 chrX 70194533 70194619 -106779521 + MER4A-int LTR ERV1 5633 5718 -1404 28884 103 7 14 chrX 70194674 70198961 -106775179 + L1PA6 LINE L1 11 4264 -1882 3775 79 2 33 chrX 70198961 70199501 -106774639 + L1PA6 LINE L1 5622 6146 -8 1568 310 37 25 chrX 70199668 70200374 -106773766 + MER4A-int LTR ERV1 5976 6689 -433 22 0 0 0 chrX 70200491 70200513 -106773627 + AT_rich Low_complexity Low_complexity 1 22 0 768 115 0 0 chrX 70200703 70200825 -106773315 + (TA)n Simple_repeat Simple_repeat 2 123 0 533 204 16 108 chrX 70200939 70201125 -106773015 + MER4A-int LTR ERV1 6426 6594 -4 1222 142 136 54 chrX 70201139 70201455 -106772685 + MER4A LTR ERV1 1 342 -322 514 136 237 8 chrX 70201516 70201634 -106772506 + MER4C LTR ERV1 300 444 -21 14976 112 61 15 chrX 70201655 70204195 -106769945 - MER4-int LTR ERV1 -105 6493 3837 1291 137 42 73 chrX 70204214 70204572 -106769568 - MER4-int LTR ERV1 -2948 3650 3304 1858 122 14 31 chrX 70204577 70204865 -106769275 - AluSq SINE Alu -30 283 1 2041 108 25 10 chrX 70204865 70205265 -106768875 - MER4-int LTR ERV1 -3456 3142 2737 1348 171 0 0 chrX 70205265 70205482 -106768658 + LTR8 LTR ERV1 1 217 -474 5249 129 10 12 chrX 70205488 70205982 -106768158 - MER4-int LTR ERV1 -3354 1661 1166 1983 132 0 14 chrX 70205982 70206334 -106767806 - AluSx SINE Alu 0 348 1 5249 129 10 12 chrX 70206334 70206701 -106767439 - MER4-int LTR ERV1 -3849 1166 800 278 197 0 30 chrX 70206743 70206809 -106767331 - MER4-int LTR ERV1 -5848 750 687 2569 116 190 8 chrX 70206833 70207475 -106766665 - MER4-int LTR ERV1 -5790 808 1 1299 207 16 69 chrX 70207579 70207942 -106766198 - L1MB7 LINE L1 -19 6165 5822 * 2009 229 19 9 chrX 70207940 70208473 -106765667 - L1MB7 LINE L1 -1213 4933 4396 7087 201 22 12 chrX 70208477 70210909 -106763231 - L1PA14 LINE L1 -3 6158 3716 6150 217 67 20 chrX 70210928 70212535 -106761605 - L1PA14 LINE L1 -2676 3470 1789 3863 248 81 30 chrX 70212531 70213700 -106760440 - L1MB7 LINE L1 -1747 4399 3130 * 1443 235 7 7 chrX 70213700 70213998 -106760142 - AluJo SINE Alu -14 298 1 3863 248 81 30 chrX 70213998 70214379 -106759761 - L1MB7 LINE L1 -3016 3130 2770 203 133 0 0 chrX 70214391 70214421 -106759719 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 316 124 9 0 chrX 70214427 70214493 -106759647 - L1MB1 LINE L1 0 6168 6100 * 3068 249 25 14 chrX 70214491 70215211 -106758929 + L1M1 LINE L1 12 739 -6826 2376 163 71 6 chrX 70215209 70215717 -106758423 + L1M1 LINE L1 2494 3034 -4531 * 8404 204 19 13 chrX 70215725 70218197 -106755943 + L1M1 LINE L1 3154 5642 -1923 31 26 0 0 chrX 70218222 70218260 -106755880 + AT_rich Low_complexity Low_complexity 1 38 0 2432 91 21 16 chrX 70218261 70218635 -106755505 - L1MA2 LINE L1 -1 6303 5928 3252 184 53 64 chrX 70221529 70221727 -106752413 - L1MD1 LINE L1 -1 6241 6042 1756 150 34 0 chrX 70221727 70221993 -106752147 - AluSx SINE Alu -37 275 1 3252 184 53 64 chrX 70221993 70222124 -106752016 - L1MD1 LINE L1 -200 6042 5911 2229 117 0 0 chrX 70222124 70222422 -106751718 + AluSx SINE Alu 1 298 -14 3252 184 53 64 chrX 70222422 70222914 -106751226 - L1MD1 LINE L1 -331 5911 5428 6155 200 30 123 chrX 70222919 70224652 -106749488 - L1PB4 LINE L1 -13 6859 4966 2123 150 118 5 chrX 70224652 70225033 -106749107 - MSTA LTR MaLR -4 424 1 8492 188 28 4 chrX 70225033 70226646 -106747494 - MSTA-int LTR MaLR 0 1651 1 1473 156 99 29 chrX 70226646 70227002 -106747138 - MSTA LTR MaLR 0 428 1 6155 200 30 123 chrX 70227002 70228889 -106745251 - L1PB4 LINE L1 -1903 4969 3177 365 164 0 0 chrX 70228956 70229017 -106745123 - MSTB1 LTR MaLR 0 432 372 3006 226 81 15 chrX 70229019 70230709 -106743431 - L1PB4 LINE L1 -4916 1947 2 261 204 0 0 chrX 70230722 70230771 -106743369 - MSTB LTR MaLR -374 52 4 4886 250 24 59 chrX 70230779 70232795 -106741345 - L1PBb LINE L1 -3764 3084 1045 1967 306 167 18 chrX 70233012 70233934 -106740206 - L1PBb LINE L1 -5781 1068 10 561 172 9 26 chrX 70233944 70234090 -106740050 - L1ME LINE L1 -726 5438 5290 4313 44 0 2 chrX 70234091 70234618 -106739522 - L1PA5 LINE L1 -7 6147 5622 5162 71 9 0 chrX 70234619 70235309 -106738831 - L1P LINE L1 -1885 4261 3566 2547 66 0 0 chrX 70235409 70235737 -106738403 + L1PA5 LINE L1 5730 6056 -98 * 5433 43 1 0 chrX 70235733 70236423 -106737717 - L1P LINE L1 -782 5364 4674 622 285 41 36 chrX 70236419 70236808 -106737332 - L1M4 LINE L1 -811 5335 4945 * 292 265 0 12 chrX 70236866 70236949 -106737191 - L1M4 LINE L1 -1203 4943 4862 21 0 0 0 chrX 70237108 70237129 -106737011 + GC_rich Low_complexity Low_complexity 1 21 0 4321 254 130 32 chrX 70237354 70239579 -106734561 - L1M4 LINE L1 -1446 4700 2258 1898 74 0 0 chrX 70239582 70239825 -106734315 + THE1B-int LTR MaLR 1338 1580 0 1905 132 48 73 chrX 70239827 70240198 -106733942 + THE1B LTR MaLR 3 364 0 930 178 92 6 chrX 70240347 70240521 -106733619 - MER5A DNA MER1_type 0 189 1 515 276 70 59 chrX 70240851 70241493 -106732647 + L1MC4a LINE L1 4598 5246 -900 2882 93 51 2 chrX 70241560 70241988 -106732152 - L1PA7 LINE L1 -3 6151 5703 1982 247 214 15 chrX 70242000 70242746 -106731394 + L1MC4a LINE L1 5374 6268 -1540 317 281 119 27 chrX 70243106 70243291 -106730849 + MLT1K LTR MaLR 316 517 -71 1825 54 0 38 chrX 70244166 70244405 -106729735 + AluY SINE Alu 82 311 0 21 0 0 0 chrX 70244915 70244936 -106729204 + AT_rich Low_complexity Low_complexity 1 21 0 2440 64 10 3 chrX 70246026 70246337 -106727803 - AluSp SINE Alu 0 313 1 402 21 0 0 chrX 70249824 70249871 -106724269 + (TAG)n Simple_repeat Simple_repeat 2 48 0 22 70 0 0 chrX 70251744 70251787 -106722353 + AT_rich Low_complexity Low_complexity 1 43 0 205 216 0 0 chrX 70252033 70252070 -106722070 + (TA)n Simple_repeat Simple_repeat 1 37 0 12299 219 44 86 chrX 70252725 70255211 -106718929 + L1MA6 LINE L1 4 2594 -3706 10032 107 25 2 chrX 70255211 70257482 -106716658 + L1PA8 LINE L1 3865 6171 -1 12299 219 44 86 chrX 70257482 70261575 -106712565 + L1MA6 LINE L1 2594 6299 -1 854 248 100 33 chrX 70261608 70261860 -106712280 + L1ME1 LINE L1 739 973 -5423 2158 86 4 0 chrX 70261860 70262170 -106711970 + AluSg SINE Alu 1 311 0 854 248 100 33 chrX 70262170 70262715 -106711425 + L1ME1 LINE L1 973 1641 -4755 490 237 39 0 chrX 70262712 70262868 -106711272 + L1ME1 LINE L1 2439 2600 -3615 * 4961 247 66 26 chrX 70262838 70264584 -106709556 + L1ME1 LINE L1 3315 5130 -1085 1171 207 4 22 chrX 70264627 70264854 -106709286 - Tigger5 DNA MER2_type -2100 223 1 460 264 88 0 chrX 70264856 70265038 -106709102 + L1ME1 LINE L1 5132 5329 -886 2380 226 68 40 chrX 70265073 70265883 -106708257 + L1ME1 LINE L1 5421 6403 0 7773 96 3 8 chrX 70265922 70267009 -106707131 + L1P3 LINE L1 4 1084 -5377 2226 82 25 3 chrX 70266983 70267300 -106706840 + L1P3 LINE L1 1004 1327 -5134 * 19318 103 13 0 chrX 70267301 70270166 -106703974 + L1P LINE L1 2718 5619 -842 22463 183 37 20 chrX 70270166 70276814 -106697326 - L1PA10 LINE L1 -37 7569 2 1749 143 76 25 chrX 70277366 70277723 -106696417 - THE1C LTR MaLR 0 375 1 288 244 235 17 chrX 70277933 70278048 -106696092 + MIR3 SINE MIR 58 197 -11 4867 71 18 19 chrX 70278430 70279116 -106695024 + L1PA10 LINE L1 5477 6161 -7 264 189 0 0 chrX 70279129 70279182 -106694958 + L1M1 LINE L1 2088 2140 -5425 * 3921 123 28 24 chrX 70279175 70279247 -106694893 + L1MA6 LINE L1 5373 5443 -857 2109 113 0 0 chrX 70279247 70279538 -106694602 + AluSc SINE Alu 1 291 -18 3921 123 28 24 chrX 70279538 70280133 -106694007 + L1MA6 LINE L1 5443 6043 -257 228 86 0 0 chrX 70280937 70280972 -106693168 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chrX 70281214 70281236 -106692904 + (A)n Simple_repeat Simple_repeat 1 22 0 2302 65 0 10 chrX 70281266 70281558 -106692582 + AluY SINE Alu 1 289 -22 282 29 0 0 chrX 70281561 70281596 -106692544 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 24 32 0 0 chrX 70282266 70282297 -106691843 + AT_rich Low_complexity Low_complexity 1 31 0 1039 167 152 7 chrX 70282373 70282642 -106691498 + MER33 DNA MER1_type 10 317 -7 21 36 0 0 chrX 70284380 70284408 -106689732 + AT_rich Low_complexity Low_complexity 1 28 0 518 263 160 0 chrX 70285000 70285175 -106688965 - MIR SINE MIR -58 204 2 319 173 19 0 chrX 70285971 70286023 -106688117 + MER5B DNA MER1_type 126 178 0 22 56 0 0 chrX 70287680 70287716 -106686424 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 70287955 70287983 -106686157 + AT_rich Low_complexity Low_complexity 1 28 0 254 294 68 80 chrX 70288539 70288702 -106685438 + MIR3 SINE MIR 47 207 -1 1981 258 90 45 chrX 70289477 70290308 -106683832 + L1ME LINE L1 20 888 -5182 257 321 64 28 chrX 70290391 70290500 -106683640 + L2 LINE L2 3160 3272 0 30 77 0 0 chrX 70291579 70291644 -106682496 + AT_rich Low_complexity Low_complexity 1 65 0 341 287 108 19 chrX 70294046 70294203 -106679937 + L2 LINE L2 3143 3313 0 1030 294 61 49 chrX 70295251 70295766 -106678374 + L1PB4 LINE L1 14 1171 -6414 366 375 59 0 chrX 70296039 70296191 -106677949 + L1PB4 LINE L1 1407 1567 -6018 417 292 48 110 chrX 70296604 70296895 -106677245 + L1PB4 LINE L1 1532 1804 -5781 12254 228 33 16 chrX 70297080 70297889 -106676251 + L1PB4 LINE L1 1759 2553 -5041 186 71 0 0 chrX 70297889 70297917 -106676223 + (TA)n Simple_repeat Simple_repeat 2 29 0 12254 228 33 16 chrX 70297917 70301113 -106673027 + L1PB4 LINE L1 2553 6029 -1565 1747 186 7 0 chrX 70301113 70301414 -106672726 + AluJo SINE Alu 3 305 -7 12254 228 33 16 chrX 70301414 70302992 -106671148 + L1PB4 LINE L1 6029 7580 -14 22 70 0 0 chrX 70303194 70303237 -106670903 + AT_rich Low_complexity Low_complexity 1 43 0 188 384 81 0 chrX 70303610 70303709 -106670431 + L3 LINE CR1 1180 1286 -291 219 282 137 38 chrX 70305078 70305209 -106668931 + L2 LINE L2 2133 2276 -1038 2054 201 20 42 chrX 70307366 70307917 -106666223 + L1ME1 LINE L1 4306 4844 -1302 1346 179 84 11 chrX 70308523 70308870 -106665270 + L1ME1 LINE L1 4841 5212 -934 18883 173 31 24 chrX 70308870 70309306 -106664834 + L1MA3 LINE L1 13 445 -7279 1724 94 0 13 chrX 70309306 70309539 -106664601 - AluSq SINE Alu -83 230 1 18883 173 31 24 chrX 70309539 70312478 -106661662 + L1MA3 LINE L1 445 3363 -4361 2236 84 3 3 chrX 70312478 70312765 -106661375 + AluY SINE Alu 1 287 -24 18883 173 31 24 chrX 70312765 70317051 -106657089 + L1MA3 LINE L1 3363 7722 -2 23 0 0 0 chrX 70317051 70317074 -106657066 + AT_rich Low_complexity Low_complexity 1 23 0 2904 240 55 29 chrX 70317092 70317887 -106656253 + L1ME1 LINE L1 5297 6117 -49 855 166 53 16 chrX 70317887 70318074 -106656066 - L1MD1 LINE L1 0 6242 6049 2904 240 55 29 chrX 70318074 70318114 -106656026 + L1ME1 LINE L1 6117 6154 -12 1464 147 9 105 chrX 70319046 70319379 -106654761 + AluJo SINE Alu 1 301 -11 191 61 30 0 chrX 70319571 70319604 -106654536 + (TATAA)n Simple_repeat Simple_repeat 1 34 0 989 54 78 0 chrX 70319980 70320109 -106654031 - MER85 DNA T2_type 0 139 1 33 66 0 0 chrX 70320597 70320658 -106653482 + AT_rich Low_complexity Low_complexity 1 61 0 1469 194 18 7 chrX 70320995 70321274 -106652866 - L1MD2 LINE L1 -454 5905 5624 572 168 30 0 chrX 70321269 70321370 -106652770 + L1MD2 LINE L1 5905 6008 -351 * 28 0 0 0 chrX 70321619 70321647 -106652493 + AT_rich Low_complexity Low_complexity 1 28 0 440 256 30 45 chrX 70322813 70322946 -106651194 + MIR SINE MIR 76 206 -56 22 56 0 0 chrX 70323524 70323560 -106650580 + AT_rich Low_complexity Low_complexity 1 36 0 520 276 113 8 chrX 70323637 70323873 -106650267 - MIR SINE MIR -3 259 2 1228 291 63 42 chrX 70323978 70324688 -106649452 - L1ME4a LINE L1 -76 6045 5321 1509 149 15 11 chrX 70325208 70325477 -106648663 + AluJb SINE Alu 33 302 -10 269 308 0 34 chrX 70325496 70325642 -106648498 - L1ME4a LINE L1 -1481 4665 4525 387 41 0 0 chrX 70325699 70325748 -106648392 + (TG)n Simple_repeat Simple_repeat 2 50 0 2666 261 49 9 chrX 70326598 70327359 -106646781 + L1MEc LINE L1 35 825 -5571 2119 114 13 3 chrX 70327360 70327659 -106646481 + AluSx SINE Alu 1 302 -10 1258 263 8 16 chrX 70327685 70328062 -106646078 + L1ME1 LINE L1 440 813 -5583 613 264 0 20 chrX 70328064 70328212 -106645928 - MER58A DNA MER1_type 0 145 1 5378 250 51 16 chrX 70328212 70330217 -106643923 + L1ME1 LINE L1 2035 4061 -2154 4228 206 46 11 chrX 70330235 70332077 -106642063 + L1ME1 LINE L1 4325 6230 -5 188 410 70 39 chrX 70332913 70333069 -106641071 + L2 LINE L2 3087 3247 -25 219 292 31 15 chrX 70333362 70333427 -106640713 - MIR SINE MIR -195 67 2 22 70 0 0 chrX 70333830 70333873 -106640267 + AT_rich Low_complexity Low_complexity 1 43 0 1735 173 0 16 chrX 70334211 70334517 -106639623 - AluJb SINE Alu -11 301 1 575 110 22 0 chrX 70335157 70335293 -106638847 + L1MA5A LINE L1 5997 6295 -2 13375 139 12 3 chrX 70335602 70337690 -106636450 - Tigger1 DNA MER2_type -172 2246 140 308 115 0 71 chrX 70337713 70337895 -106636245 + (TA)n Simple_repeat Simple_repeat 1 169 0 324 152 40 20 chrX 70337901 70338000 -106636140 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 333 111 0 33 chrX 70338002 70338092 -106636048 + (TA)n Simple_repeat Simple_repeat 2 88 0 314 279 23 0 chrX 70338094 70338180 -106635960 + L1MC4 LINE L1 6616 6703 -1339 231 224 0 0 chrX 70338229 70338278 -106635862 - Tigger1 DNA MER2_type -2369 49 1 1963 223 79 6 chrX 70338299 70338779 -106635361 - Charlie1 DNA MER1_type -783 1978 1464 422 243 29 0 chrX 70338778 70338881 -106635259 - Charlie1 DNA MER1_type -2654 107 2 * 347 226 0 60 chrX 70339514 70339598 -106634542 - L2 LINE L2 -2 3311 3233 695 179 0 0 chrX 70339667 70339779 -106634361 + MLT1B LTR MaLR 5 116 -274 22 56 0 0 chrX 70340182 70340218 -106633922 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chrX 70341202 70341226 -106632914 + AT_rich Low_complexity Low_complexity 1 24 0 243 103 0 0 chrX 70341551 70341590 -106632550 + (CCA)n Simple_repeat Simple_repeat 1 39 0 1222 198 28 36 chrX 70341859 70342112 -106632028 + AluJo SINE Alu 37 287 -25 284 269 128 0 chrX 70343814 70343892 -106630248 - MIR3 SINE MIR -10 198 111 22 0 0 0 chrX 70344304 70344326 -106629814 + AT_rich Low_complexity Low_complexity 1 22 0 330 240 68 33 chrX 70344462 70344582 -106629558 + MIR3 SINE MIR 71 195 -13 309 337 43 0 chrX 70344946 70345038 -106629102 + L2 LINE L2 3133 3228 -44 535 143 109 8 chrX 70345128 70345247 -106628893 + L1MA9 LINE L1 6144 6274 -38 454 299 36 66 chrX 70345710 70345877 -106628263 - MER5B DNA MER1_type -13 165 4 181 212 45 0 chrX 70345912 70345978 -106628162 + (CATA)n Simple_repeat Simple_repeat 2 70 0 311 226 12 71 chrX 70346425 70346509 -106627631 - L2 LINE L2 -2 3311 3233 2178 178 11 3 chrX 70346578 70346960 -106627180 + MLT1B LTR MaLR 1 385 -5 224 284 27 14 chrX 70347911 70347985 -106626155 + MIR SINE MIR 118 192 -70 346 155 35 0 chrX 70348040 70348098 -106626042 - Tigger5 DNA MER2_type 0 2323 2264 318 228 0 0 chrX 70348100 70348157 -106625983 + Tigger5 DNA MER2_type 2264 2320 -3 * 339 216 68 0 chrX 70348157 70348230 -106625910 - Tigger5 DNA MER2_type -2245 78 1 316 341 55 31 chrX 70350109 70350263 -106623877 + MIR3 SINE MIR 35 200 -8 2820 7 0 0 chrX 70350263 70350573 -106623567 + AluYb8 SINE Alu 1 310 -8 182 369 119 0 chrX 70350750 70350834 -106623306 + L3b LINE CR1 1452 1545 -38 344 134 0 15 chrX 70350974 70351041 -106623099 + L1MB7 LINE L1 6119 6184 0 1038 221 20 0 chrX 70351883 70352082 -106622058 + MER58A DNA MER1_type 1 203 -21 311 330 65 23 chrX 70352243 70352504 -106621636 + L1MDa LINE L1 57 328 -6212 269 261 52 17 chrX 70352794 70352909 -106621231 + L1MDa LINE L1 748 866 -5664 1401 239 90 58 chrX 70353056 70353591 -106620549 + L1MDa LINE L1 927 1581 -4959 990 224 12 4 chrX 70353591 70353845 -106620295 + L1MB8 LINE L1 5914 6169 -9 1401 239 90 58 chrX 70353845 70354102 -106620038 + L1MDa LINE L1 1581 1828 -4712 1235 236 67 15 chrX 70354112 70354455 -106619685 + L1ME1 LINE L1 5641 6001 -165 * 1346 214 25 31 chrX 70354453 70354687 -106619453 + L1ME1 LINE L1 5794 6027 -139 186 43 0 0 chrX 70354687 70354710 -106619430 + (TG)n Simple_repeat Simple_repeat 1 23 0 1346 214 25 31 chrX 70354710 70354830 -106619310 + L1ME1 LINE L1 6027 6146 -20 715 290 205 13 chrX 70354928 70355397 -106618743 + L2 LINE L2 1890 2448 -866 1968 152 13 0 chrX 70356794 70357097 -106617043 + AluSx SINE Alu 1 307 -5 2281 108 0 9 chrX 70357253 70357568 -106616572 + AluSx SINE Alu 1 312 0 1661 231 53 40 chrX 70357635 70358271 -106615869 + MLT1E LTR MaLR 1 654 0 3966 71 1 97 chrX 70358572 70359222 -106614918 - L1PA8 LINE L1 -6 6166 5579 3866 152 9 5 chrX 70359383 70360020 -106614120 + L1MB2 LINE L1 5505 6144 -27 27 49 0 0 chrX 70360022 70360063 -106614077 + AT_rich Low_complexity Low_complexity 1 41 0 323 292 196 38 chrX 70360169 70360378 -106613762 + MIR SINE MIR 9 250 -12 835 203 0 23 chrX 70360553 70360730 -106613410 - FRAM SINE Alu -3 173 1 388 269 27 60 chrX 70361649 70361798 -106612342 + L2 LINE L2 3168 3311 -2 917 158 20 0 chrX 70362120 70362266 -106611874 + MER2 DNA MER2_type 9 157 -188 248 125 42 21 chrX 70362305 70362353 -106611787 - MER2 DNA MER2_type -148 197 149 225 125 75 0 chrX 70362367 70362407 -106611733 - MER2 DNA MER2_type -148 197 155 206 286 171 19 chrX 70363520 70363625 -106610515 - MIR SINE MIR -75 187 67 703 204 186 18 chrX 70364217 70364438 -106609702 - MIR SINE MIR -3 259 2 26 23 0 23 chrX 70364689 70364712 -106609428 + AT_rich Low_complexity Low_complexity 1 24 -19 1908 133 11 3 chrX 70364712 70364998 -106609142 - AluJb SINE Alu -24 288 1 26 23 0 23 chrX 70364998 70365018 -106609122 + AT_rich Low_complexity Low_complexity 24 43 0 26 30 0 0 chrX 70365423 70365456 -106608684 + AT_rich Low_complexity Low_complexity 1 33 0 2148 220 109 19 chrX 70365529 70366450 -106607690 + L1ME3 LINE L1 4834 5855 -307 843 258 36 0 chrX 70367323 70367560 -106606580 - L1M4 LINE L1 -1280 4866 4616 189 0 0 0 chrX 70367560 70367581 -106606559 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 843 258 36 0 chrX 70367581 70367622 -106606518 - L1M4 LINE L1 -1530 4616 4578 205 298 48 58 chrX 70367839 70367943 -106606197 + MIR SINE MIR 156 258 -4 570 245 103 7 chrX 70368515 70368670 -106605470 + MER5B DNA MER1_type 3 172 -6 294 73 0 0 chrX 70368928 70368969 -106605171 + (TC)n Simple_repeat Simple_repeat 2 42 0 279 79 0 0 chrX 70368969 70369007 -106605133 + (CA)n Simple_repeat Simple_repeat 1 38 0 323 355 81 19 chrX 70370158 70370527 -106603613 + L2 LINE L2 2476 2867 -447 264 30 0 0 chrX 70370707 70370740 -106603400 + (CCA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chrX 70370943 70370968 -106603172 + AT_rich Low_complexity Low_complexity 1 25 0 403 314 77 32 chrX 70371303 70371523 -106602617 - MIR SINE MIR -28 234 5 728 149 0 71 chrX 70371612 70371753 -106602387 + FLAM_A SINE Alu 3 133 0 343 351 81 65 chrX 70374492 70374881 -106599259 + L1M2 LINE L1 676 1078 -5771 306 0 0 0 chrX 70374881 70374915 -106599225 + (CCG)n Simple_repeat Simple_repeat 3 36 0 343 351 81 65 chrX 70374915 70375092 -106599048 + L1M2 LINE L1 1078 1251 -5598 214 276 51 0 chrX 70375253 70375351 -106598789 + (GGGTG)n Simple_repeat Simple_repeat 5 107 0 191 277 0 0 chrX 70375986 70376033 -106598107 - L2 LINE L2 -32 3281 3235 2465 81 0 0 chrX 70376549 70376857 -106597283 - AluSg SINE Alu 0 310 3 378 285 92 62 chrX 70376882 70377250 -106596890 + L2 LINE L2 1816 2194 -1120 2157 108 26 37 chrX 70377254 70377633 -106596507 + THE1C LTR MaLR 1 375 0 3746 111 8 72 chrX 70377634 70378284 -106595856 + THE1C-int LTR MaLR 2 609 -971 963 134 0 0 chrX 70378438 70378617 -106595523 + (TA)n Simple_repeat Simple_repeat 2 180 0 325 221 70 23 chrX 70378623 70378709 -106595431 - L1MC4 LINE L1 -1339 6703 6614 972 133 0 0 chrX 70378718 70378898 -106595242 + (TA)n Simple_repeat Simple_repeat 1 180 0 195 139 0 0 chrX 70378915 70378951 -106595189 + (GA)n Simple_repeat Simple_repeat 2 37 0 10029 174 37 23 chrX 70379819 70381822 -106592318 - L1MA4 LINE L1 0 6300 4236 1928 131 3 0 chrX 70381822 70382105 -106592035 - AluSx SINE Alu -28 284 1 10029 174 37 23 chrX 70382105 70383333 -106590807 - L1MA4 LINE L1 -2064 4236 3028 4499 135 11 7 chrX 70383347 70384094 -106590046 - L1MA2 LINE L1 0 6304 5555 2569 116 3 0 chrX 70384094 70384463 -106589677 + L1PA11 LINE L1 5795 6174 0 4069 177 19 22 chrX 70384464 70385411 -106588729 + L1PB4 LINE L1 5006 6144 -12 34 0 0 0 chrX 70385412 70385446 -106588694 + AT_rich Low_complexity Low_complexity 1 34 0 2940 233 41 33 chrX 70385447 70385944 -106588196 + L1ME1 LINE L1 4783 5274 -892 2327 82 0 16 chrX 70385944 70386259 -106587881 + AluY SINE Alu 1 310 -1 2940 233 41 33 chrX 70386259 70387132 -106587008 + L1ME1 LINE L1 5274 6161 -5 23 33 0 0 chrX 70388295 70388325 -106585815 + AT_rich Low_complexity Low_complexity 1 30 0 243 33 0 0 chrX 70389971 70390001 -106584139 + L1PA16 LINE L1 6128 6157 -9 308 261 36 51 chrX 70392312 70392450 -106581690 - L3b LINE CR1 -230 1353 1218 243 33 0 0 chrX 70392528 70392558 -106581582 + L1PA16 LINE L1 6128 6157 -9 551 322 91 5 chrX 70394825 70395033 -106579107 - MIR SINE MIR -36 226 1 318 339 173 21 chrX 70395675 70396146 -106577994 + L2 LINE L2 1699 2286 -1028 1305 229 119 10 chrX 70396146 70396548 -106577592 - LTR2 LTR ERV1 -1 448 3 318 339 173 21 chrX 70396548 70396690 -106577450 + L2 LINE L2 2286 2405 -909 1385 318 134 53 chrX 70397227 70398252 -106575888 + L2 LINE L2 994 2159 -1155 1998 110 24 14 chrX 70398252 70398573 -106575567 - AluSx SINE Alu 0 312 1 1385 318 134 53 chrX 70398573 70398917 -106575223 + L2 LINE L2 2159 2474 -840 283 356 92 59 chrX 70398950 70399253 -106574887 + L2 LINE L2 2914 3226 -46 7122 57 0 1 chrX 70399500 70401026 -106573114 - L1PA6 LINE L1 -2 6152 4625 708 222 57 28 chrX 70401173 70401385 -106572755 + MLT1D LTR MaLR 175 392 -113 5136 159 58 16 chrX 70401515 70402906 -106571234 + L1MA4 LINE L1 4849 6294 -6 565 115 85 79 chrX 70402919 70403084 -106571056 + MER53 DNA DNA 21 186 -3 1222 224 3 16 chrX 70403604 70403917 -106570223 - L1MDb LINE L1 -5152 1257 949 22 0 0 0 chrX 70404779 70404801 -106569339 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrX 70406286 70406315 -106567825 + AT_rich Low_complexity Low_complexity 1 29 0 2033 152 0 0 chrX 70407224 70407527 -106566613 + AluJb SINE Alu 1 303 -9 351 78 0 0 chrX 70408987 70409038 -106565102 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 873 133 0 15 chrX 70410790 70410925 -106563215 + FLAM_C SINE Alu 1 133 0 1599 180 52 4 chrX 70411152 70411424 -106562716 - AluJb SINE Alu -25 287 3 290 101 63 38 chrX 70411431 70411510 -106562630 - L1M1 LINE L1 -4344 3221 3141 5550 144 39 19 chrX 70411511 70412444 -106561696 - L1M1 LINE L1 -6604 961 11 547 77 13 0 chrX 70412658 70412736 -106561404 - MADE1 DNA Mariner -1 79 1 3446 121 2 2 chrX 70414016 70414529 -106559611 + MER75 DNA T2_type 1 513 -1 216 267 156 11 chrX 70415591 70415681 -106558459 - MIR SINE MIR -90 118 16 324 333 9 0 chrX 70416156 70416261 -106557879 + MIR SINE MIR 50 155 -107 186 43 0 0 chrX 70416568 70416591 -106557549 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1596 66 9 0 chrX 70416908 70417121 -106557019 + L1PA6 LINE L1 5939 6153 -1 35 0 0 0 chrX 70417795 70417830 -106556310 + AT_rich Low_complexity Low_complexity 1 35 0 181 336 143 25 chrX 70418994 70419113 -106555027 - L2 LINE L2 -1 3312 3180 446 380 60 42 chrX 70419122 70419456 -106554684 - L2 LINE L2 -641 2673 2334 459 318 24 11 chrX 70420089 70420275 -106553865 - MIR SINE MIR -74 188 3 891 287 189 29 chrX 70420704 70421261 -106552879 + L3 LINE CR1 325 970 -607 211 61 91 0 chrX 70421421 70421454 -106552686 + L3 LINE CR1 1086 1121 -456 242 194 0 83 chrX 70422216 70422288 -106551852 + L1MC4 LINE L1 6658 6723 -1319 367 274 10 20 chrX 70422834 70422936 -106551204 + MIR3 SINE MIR 12 112 -96 180 97 0 0 chrX 70423431 70423462 -106550678 + (CA)n Simple_repeat Simple_repeat 2 32 0 2904 93 7 0 chrX 70425003 70425411 -106548729 + L1PB2 LINE L1 5737 6147 -4 349 153 0 0 chrX 70425468 70425527 -106548613 + L2 LINE L2 3214 3272 0 252 299 52 31 chrX 70426981 70427078 -106547062 + MIR SINE MIR 16 114 -94 436 312 41 45 chrX 70427094 70427315 -106546825 - MIR SINE MIR 0 262 43 292 300 0 12 chrX 70427315 70427395 -106546745 - MIR SINE MIR -183 79 1 292 217 43 65 chrX 70427395 70427485 -106546655 + MIR3 SINE MIR 102 189 -19 1018 259 100 80 chrX 70428058 70428230 -106545910 - HAL1b LINE L1 -552 796 629 2045 127 0 13 chrX 70428230 70428529 -106545611 - AluSx SINE Alu -17 295 1 1018 259 100 80 chrX 70428529 70429069 -106545071 - HAL1b LINE L1 -719 629 70 407 127 0 13 chrX 70429215 70429287 -106544853 - L1M3 LINE L1 -499 5681 5615 1215 227 26 10 chrX 70429298 70429658 -106544482 + L1M4c LINE L1 1609 2068 -4316 534 251 18 18 chrX 70429672 70429839 -106544301 + HAL1b LINE L1 799 965 -383 285 244 13 26 chrX 70430386 70430464 -106543676 + MIR SINE MIR 63 139 -69 216 0 0 0 chrX 70431450 70431474 -106542666 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6633 109 14 36 chrX 70432158 70433165 -106540975 - L1MA2 LINE L1 0 6304 5318 1931 153 0 16 chrX 70433165 70433472 -106540668 - AluSx SINE Alu 0 312 11 6633 109 14 36 chrX 70433472 70433610 -106540530 - L1MA2 LINE L1 -986 5318 5179 291 300 20 10 chrX 70433626 70433726 -106540414 + MIR3 SINE MIR 108 208 0 1083 196 9 50 chrX 70434354 70434567 -106539573 + Tigger7 DNA MER2_type 1 204 -2283 2784 110 13 41 chrX 70434567 70435275 -106538865 - MER4E LTR ERV1 -1 765 1 485 179 17 133 chrX 70435275 70435437 -106538703 + Tigger7 DNA MER2_type 203 344 -389 947 122 0 45 chrX 70435432 70435588 -106538552 + Tigger7 DNA MER2_type 2339 2487 0 272 283 188 14 chrX 70435616 70435754 -106538386 - MIR3 SINE MIR -13 195 34 500 283 42 52 chrX 70435760 70435951 -106538189 + MIR SINE MIR 1 189 -73 1708 173 13 13 chrX 70436304 70436616 -106537524 - AluJb SINE Alu 0 312 1 333 0 0 0 chrX 70437367 70437404 -106536736 + (CAA)n Simple_repeat Simple_repeat 3 39 0 211 242 121 15 chrX 70437781 70437847 -106536293 - L2 LINE L2 0 3272 3200 3265 221 147 13 chrX 70438573 70438832 -106535308 - L1MC4 LINE L1 -262 7780 7557 779 80 9 0 chrX 70438832 70438944 -106535196 + (TA)n Simple_repeat Simple_repeat 2 114 0 3265 221 147 13 chrX 70438944 70439636 -106534504 - L1MC4 LINE L1 -485 7557 6701 322 224 0 0 chrX 70439638 70439696 -106534444 - Tigger5 DNA MER2_type -2 2321 2264 384 146 0 0 chrX 70439717 70439772 -106534368 - Tigger5 DNA MER2_type -2268 55 1 639 192 102 69 chrX 70439772 70440019 -106534121 - L1MC3 LINE L1 -1140 6645 6416 642 224 94 36 chrX 70440343 70440566 -106533574 - MIR SINE MIR -26 236 1 316 298 95 24 chrX 70440661 70440829 -106533311 + MER5A DNA MER1_type 4 183 -6 872 154 0 27 chrX 70441713 70441862 -106532278 + MER69 DNA AcHobo 1 145 -2381 303 232 0 0 chrX 70441860 70441929 -106532211 + MER69 DNA AcHobo 2451 2519 -7 * 417 146 23 77 chrX 70442842 70442972 -106531168 + L1MC3 LINE L1 6936 7058 -727 2648 214 96 8 chrX 70443076 70443788 -106530352 + L1MC4a LINE L1 7052 7808 0 229 409 15 0 chrX 70444114 70444251 -106529889 - L2 LINE L2 -218 3054 2916 21 36 0 0 chrX 70444326 70444354 -106529786 + AT_rich Low_complexity Low_complexity 1 28 0 406 299 127 6 chrX 70444395 70444552 -106529588 - MIR3 SINE MIR -28 180 5 853 195 12 35 chrX 70445022 70445191 -106528949 + FAM SINE Alu 1 165 -10 207 0 0 0 chrX 70445381 70445404 -106528736 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 447 329 22 7 chrX 70447687 70447824 -106526316 + MIR3 SINE MIR 6 144 -64 585 222 7 15 chrX 70447963 70448098 -106526042 + MIR SINE MIR 129 262 0 22 56 0 0 chrX 70448120 70448156 -106525984 + AT_rich Low_complexity Low_complexity 1 36 0 38296 82 6 13 chrX 70448932 70454924 -106519216 - L1PA6 LINE L1 0 6154 11 2452 78 0 0 chrX 70455345 70455640 -106518500 - AluY SINE Alu -16 295 1 201 304 89 36 chrX 70457782 70457894 -106516246 + MIR SINE MIR 29 146 -116 1039 201 146 73 chrX 70458327 70458420 -106515720 + MSTD LTR MaLR 1 86 -310 2398 94 3 0 chrX 70458420 70458727 -106515413 + AluSp SINE Alu 1 308 -5 1039 201 146 73 chrX 70458727 70459002 -106515138 + MSTD LTR MaLR 86 396 0 2637 229 26 0 chrX 70459107 70459722 -106514418 + L1 LINE L1 4555 5185 -961 2931 187 17 0 chrX 70459745 70460323 -106513817 + L1MB2 LINE L1 3607 4194 -1952 2149 207 0 8 chrX 70460329 70460826 -106513314 - L1 LINE L1 -1336 4810 4318 9398 97 3 14 chrX 70460832 70462122 -106512018 - THE1B-int LTR MaLR -302 1278 3 2005 165 40 6 chrX 70462125 70462477 -106511663 - THE1B LTR MaLR 0 364 1 6103 92 17 11 chrX 70462480 70463726 -106510414 + L1PB1 LINE L1 4898 6150 -1 4531 172 29 6 chrX 70463737 70464637 -106509503 + L1MB2 LINE L1 5215 6135 -36 1140 223 96 4 chrX 70464637 70464786 -106509354 - AluJb SINE Alu -21 291 157 216 0 0 0 chrX 70464786 70464810 -106509330 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1140 223 96 4 chrX 70464810 70464920 -106509220 - AluJb SINE Alu -155 157 8 726 241 11 17 chrX 70465580 70465754 -106508386 + MARNA DNA Mariner 69 241 -345 240 241 19 0 chrX 70466049 70466103 -106508037 + L2 LINE L2 3218 3272 0 6977 164 32 5 chrX 70466147 70467904 -106506236 - L1PA13 LINE L1 -26 6137 4309 2000 135 3 0 chrX 70467904 70468192 -106505948 - AluSx SINE Alu -15 297 9 6977 164 32 5 chrX 70468192 70468585 -106505555 - L1PA13 LINE L1 -1854 4309 3928 205 158 0 0 chrX 70468749 70468787 -106505353 - L2 LINE L2 -8 3305 3268 280 366 37 8 chrX 70468883 70469017 -106505123 - L2 LINE L2 -225 3047 2910 393 39 0 0 chrX 70469770 70469821 -106504319 + (CA)n Simple_repeat Simple_repeat 1 51 0 961 168 5 16 chrX 70470219 70470409 -106503731 - L1MA6 LINE L1 -1 6299 6112 202 176 0 0 chrX 70470526 70470560 -106503580 - L3 LINE CR1 -3 1574 1541 4237 163 31 0 chrX 70470653 70471389 -106502751 - L1PA16 LINE L1 0 6166 5408 281 84 0 18 chrX 70471411 70471467 -106502673 + L1PA8A LINE L1 5400 5452 -679 10817 232 13 12 chrX 70471470 70474228 -106499912 - L1PA16 LINE L1 -743 5403 2642 1931 162 24 18 chrX 70474228 70474561 -106499579 + LTR32 LTR ERVL 15 349 -122 786 224 0 6 chrX 70474736 70474892 -106499248 + LTR32 LTR ERVL 317 471 0 2438 264 19 19 chrX 70474892 70475628 -106498512 - L1PA16 LINE L1 -3500 2646 1911 1566 139 44 0 chrX 70475700 70475951 -106498189 + L1PA15 LINE L1 5803 6064 -101 * 14501 170 27 13 chrX 70475943 70480388 -106493752 - L1M1 LINE L1 -709 7012 2509 415 209 35 0 chrX 70480393 70480479 -106493661 - MER2 DNA MER2_type -256 89 1 380 67 17 0 chrX 70481274 70481334 -106492806 + (TG)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chrX 70481803 70481825 -106492315 + AT_rich Low_complexity Low_complexity 1 22 0 5256 158 27 7 chrX 70481927 70482892 -106491248 - L1MA6 LINE L1 -2 6298 5315 * 5887 102 21 1 chrX 70482883 70483728 -106490412 - L1PA11 LINE L1 -6 6168 5307 3843 137 9 34 chrX 70483727 70484218 -106489922 + L1P LINE L1 4527 4998 -1148 * 2311 108 0 0 chrX 70484218 70484523 -106489617 + AluSq SINE Alu 1 305 -8 3843 137 9 34 chrX 70484523 70484718 -106489422 + L1P LINE L1 4998 5196 -950 2112 89 15 28 chrX 70484718 70485043 -106489097 + LTR17 LTR ERV1 4 324 -456 532 198 0 0 chrX 70485058 70485154 -106488986 + L1P LINE L1 5178 5273 -873 635 192 25 0 chrX 70485158 70485278 -106488862 - FRAM SINE Alu -16 160 38 3251 199 29 0 chrX 70485293 70485977 -106488163 - L1MA6 LINE L1 -830 5316 4613 * 18832 176 32 31 chrX 70485973 70489899 -106484241 + L1MA1 LINE L1 2 4057 -3508 8573 153 32 16 chrX 70489899 70492631 -106481509 + L1MA1 LINE L1 4934 7777 0 223 164 30 30 chrX 70492631 70492698 -106481442 + A-rich Low_complexity Low_complexity 2 180 0 298 245 21 75 chrX 70492716 70492810 -106481330 + MER5A DNA MER1_type 101 189 0 368 382 0 18 chrX 70492893 70493058 -106481082 + MIR3 SINE MIR 41 202 -6 204 349 30 0 chrX 70493101 70493167 -106480973 + L2 LINE L2 3202 3269 -3 333 258 0 62 chrX 70493705 70493802 -106480338 - MIR SINE MIR -67 195 105 2358 29 4 0 chrX 70494323 70494599 -106479541 + AluY SINE Alu 35 311 0 861 161 0 7 chrX 70494844 70494999 -106479141 - L1PA16 LINE L1 -134 6032 5879 376 81 0 68 chrX 70495007 70495081 -106479059 + L1PA16 LINE L1 6098 6166 0 581 264 156 48 chrX 70495742 70495973 -106478167 - MIR SINE MIR 0 262 7 1310 138 28 119 chrX 70496111 70496438 -106477702 + AluYb8 SINE Alu 5 301 -17 17945 163 26 13 chrX 70496439 70503563 -106470577 + L1MA1 LINE L1 508 7721 0 187 49 49 49 chrX 70503607 70503648 -106470492 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 768 246 83 4 chrX 70503706 70503958 -106470182 + L1ME4a LINE L1 5845 6116 -5 25 0 0 0 chrX 70504744 70504769 -106469371 + AT_rich Low_complexity Low_complexity 1 25 0 243 318 0 0 chrX 70506731 70506794 -106467346 + L2 LINE L2 3208 3270 -2 184 250 77 0 chrX 70506864 70506916 -106467224 + L3b LINE CR1 1302 1357 -226 21 0 0 0 chrX 70508923 70508944 -106465196 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 70510082 70510104 -106464036 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 70510530 70510554 -106463586 + AT_rich Low_complexity Low_complexity 1 24 0 2124 100 10 13 chrX 70513536 70513836 -106460304 + AluSq SINE Alu 1 299 -14 185 304 264 0 chrX 70514115 70514240 -106459900 + MIR3 SINE MIR 30 187 -21 1519 186 16 34 chrX 70514287 70514668 -106459472 + L1ME1 LINE L1 4736 5109 -1037 22 56 0 0 chrX 70514677 70514713 -106459427 + AT_rich Low_complexity Low_complexity 1 36 0 1474 193 33 13 chrX 70514723 70515023 -106459117 - AluJo SINE Alu -6 306 1 1224 172 8 53 chrX 70515047 70515291 -106458849 + AluJo SINE Alu 66 298 -14 1148 208 47 0 chrX 70515296 70515662 -106458478 + L1ME1 LINE L1 5151 5531 -635 3134 139 48 6 chrX 70515662 70516250 -106457890 - MER4B LTR ERV1 0 779 3 1148 223 23 19 chrX 70516256 70516521 -106457619 + L1ME1 LINE L1 5529 5794 -370 512 208 10 0 chrX 70516500 70516613 -106457527 + L1ME1 LINE L1 6060 6332 -2 * 1019 206 39 19 chrX 70516638 70516895 -106457245 - L1MA7 LINE L1 -231 6060 5799 834 175 35 15 chrX 70516897 70517097 -106457043 + L1MA7 LINE L1 6078 6281 -10 1657 110 34 137 chrX 70518503 70518884 -106455256 + MER7A DNA MER2_type 4 343 -3 332 319 54 60 chrX 70520968 70521153 -106452987 - L3 LINE CR1 -59 1518 1335 221 171 24 0 chrX 70521339 70521380 -106452760 + GA-rich Low_complexity Low_complexity 1 42 0 180 77 0 0 chrX 70521567 70521593 -106452547 + (A)n Simple_repeat Simple_repeat 1 26 0 204 40 0 0 chrX 70521802 70521827 -106452313 + (TG)n Simple_repeat Simple_repeat 2 26 0 191 149 0 43 chrX 70521831 70521878 -106452262 + (CATA)n Simple_repeat Simple_repeat 4 48 0 689 248 59 86 chrX 70523918 70524427 -106449713 + L1ME4a LINE L1 5625 6119 -2 243 176 0 44 chrX 70524607 70524675 -106449465 + L1ME4a LINE L1 6051 6115 -6 24 0 0 0 chrX 70525221 70525245 -106448895 + AT_rich Low_complexity Low_complexity 1 24 0 703 294 40 18 chrX 70525251 70525577 -106448563 - L1MA9 LINE L1 -44 6268 5936 2244 137 101 5 chrX 70525612 70525999 -106448141 + MSTA LTR MaLR 1 424 -4 562 106 11 32 chrX 70526004 70526098 -106448042 + L1MA9 LINE L1 5855 5946 -366 189 0 0 0 chrX 70526924 70526945 -106447195 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 604 327 86 50 chrX 70528430 70528621 -106445519 + L2 LINE L2 1814 1997 -1317 868 197 17 34 chrX 70528621 70528799 -106445341 - FAM SINE Alu 0 175 1 604 327 86 50 chrX 70528799 70529145 -106444995 + L2 LINE L2 1997 2370 -944 315 177 0 0 chrX 70529383 70529445 -106444695 + (TG)n Simple_repeat Simple_repeat 1 62 0 354 331 34 14 chrX 70529491 70529841 -106444299 + L1M4 LINE L1 4877 5233 -913 979 199 26 82 chrX 70529913 70530166 -106443974 + L1MB7 LINE L1 5887 6122 -62 1279 214 42 35 chrX 70530166 70530311 -106443829 - AluJo SINE Alu -21 291 148 217 26 26 51 chrX 70530311 70530350 -106443790 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1279 214 42 35 chrX 70530350 70530493 -106443647 - AluJo SINE Alu -164 148 1 979 199 26 82 chrX 70530493 70530545 -106443595 + L1MB7 LINE L1 6122 6175 -9 25 0 0 0 chrX 70530626 70530651 -106443489 + AT_rich Low_complexity Low_complexity 1 25 0 327 327 81 37 chrX 70530655 70530829 -106443311 - MIR3 SINE MIR -23 185 3 21 57 0 0 chrX 70531511 70531546 -106442594 + AT_rich Low_complexity Low_complexity 1 35 0 608 147 0 62 chrX 70531550 70531679 -106442461 - L1MA6 LINE L1 0 6300 6180 3027 210 113 26 chrX 70532040 70533002 -106441138 - L1MC4a LINE L1 -9 8079 5445 25 0 0 0 chrX 70533024 70533049 -106441091 + AT_rich Low_complexity Low_complexity 1 25 0 575 155 0 39 chrX 70533116 70533219 -106440921 + FRAM SINE Alu 10 108 -68 1868 248 14 22 chrX 70533230 70533782 -106440358 + L1M4 LINE L1 4582 5129 -1017 865 230 36 0 chrX 70533778 70534030 -106440110 - L1MC4a LINE L1 -1526 4900 4640 * 323 155 41 0 chrX 70534009 70534106 -106440034 - L1MC4a LINE L1 -2972 3454 3354 * 790 191 86 25 chrX 70534107 70534269 -106439871 - FRAM SINE Alu -5 171 1 525 180 55 0 chrX 70534269 70534397 -106439743 - L1MC4a LINE L1 -3059 3367 3233 9076 163 63 32 chrX 70534420 70536281 -106437859 - L1MC4a LINE L1 -4504 1922 3 24 0 0 0 chrX 70536285 70536309 -106437831 + AT_rich Low_complexity Low_complexity 1 24 0 429 20 0 0 chrX 70536309 70536359 -106437781 + (TG)n Simple_repeat Simple_repeat 1 50 0 284 264 23 0 chrX 70536425 70536512 -106437628 - L1MC4 LINE L1 -1340 6702 6614 253 237 0 43 chrX 70536431 70536524 -106437616 + L1MC4 LINE L1 6615 6703 -1339 * 211 87 65 43 chrX 70536540 70536586 -106437554 + (CCCTAA)n Simple_repeat Simple_repeat 5 51 0 216 0 0 0 chrX 70536586 70536610 -106437530 + (TG)n Simple_repeat Simple_repeat 1 24 0 2152 147 8 5 chrX 70536615 70536982 -106437158 + L1PB4 LINE L1 5789 6156 0 2177 258 35 9 chrX 70536982 70537916 -106436224 - L1MDa LINE L1 -3239 3301 2340 473 0 18 0 chrX 70537916 70537973 -106436167 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 2546 219 75 60 chrX 70537987 70538258 -106435882 - L1MDa LINE L1 -5769 771 506 206 54 0 54 chrX 70538258 70538295 -106435845 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2546 219 75 60 chrX 70538295 70538797 -106435343 - L1MDa LINE L1 -6034 506 6 1367 102 15 0 chrX 70539393 70539599 -106434541 - L1MA2 LINE L1 0 6304 6096 1503 222 41 18 chrX 70540165 70540506 -106433634 + MLT1A1 LTR MaLR 1 349 -16 1019 193 11 0 chrX 70540506 70540693 -106433447 + MLT2B1 LTR ERVL 1 189 -331 262 282 16 13 chrX 70540976 70541062 -106433078 + MIR SINE MIR 82 176 -32 397 242 116 58 chrX 70541333 70541523 -106432617 - L2 LINE L2 0 3313 3113 287 297 101 43 chrX 70541607 70541745 -106432395 - MER5A DNA MER1_type -1 188 43 504 117 0 0 chrX 70541812 70541889 -106432251 + (TA)n Simple_repeat Simple_repeat 2 78 0 21 36 0 0 chrX 70542049 70542077 -106432063 + AT_rich Low_complexity Low_complexity 1 28 0 2692 51 0 0 chrX 70542433 70542769 -106431371 + L1PA5 LINE L1 5811 6146 -8 2645 33 3 0 chrX 70543520 70543826 -106430314 - AluY SINE Alu -4 307 1 346 261 11 22 chrX 70544004 70544096 -106430044 + HAL1 LINE L1 1088 1178 -1329 939 247 62 90 chrX 70544107 70544605 -106429535 + HAL1 LINE L1 1845 2328 -179 1182 283 72 31 chrX 70544608 70545093 -106429047 + MLT1J LTR MaLR 7 511 0 399 260 47 53 chrX 70545108 70545277 -106428863 + HAL1 LINE L1 2340 2507 0 187 383 96 17 chrX 70545393 70545508 -106428632 + L2 LINE L2 3141 3264 -8 610 233 0 0 chrX 70545650 70545766 -106428374 - FLAM_A SINE Alu -17 116 1 733 259 71 10 chrX 70545818 70546015 -106428125 - MER63A DNA MER1_type 0 210 2 234 0 0 0 chrX 70546083 70546109 -106428031 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 4261 93 12 5 chrX 70546109 70546699 -106427441 - L1PA10 LINE L1 -21 6147 5554 2358 101 8 1 chrX 70546691 70547246 -106426894 + L1PA10 LINE L1 4996 5553 -615 * 3738 214 33 12 chrX 70547302 70548296 -106425844 - L1MB7 LINE L1 0 6184 5167 299 222 188 35 chrX 70548776 70548920 -106425220 - L1ME4a LINE L1 -17 6104 5939 215 253 39 110 chrX 70549162 70549316 -106424824 - MIR SINE MIR -56 206 64 194 125 0 25 chrX 70549465 70549505 -106424635 + (GA)n Simple_repeat Simple_repeat 2 40 0 256 314 44 22 chrX 70551212 70551278 -106422862 - L1ME4a LINE L1 -1927 5881 5818 3020 162 24 14 chrX 70551278 70551397 -106422743 - L1MB1 LINE L1 0 6168 6052 1591 88 5 5 chrX 70551397 70551614 -106422526 - AluY SINE Alu -2 309 93 3020 162 24 14 chrX 70551614 70552085 -106422055 - L1MB1 LINE L1 -116 6052 5572 256 314 44 22 chrX 70552085 70552155 -106421985 - L1ME4a LINE L1 -1990 5818 5742 303 280 155 77 chrX 70552167 70552182 -106421958 - L1ME4a LINE L1 -474 5647 5635 2108 228 66 2 chrX 70552182 70552670 -106421470 - LTR53 LTR ERVL 0 519 1 303 280 155 77 chrX 70552670 70552708 -106421432 - L1ME4a LINE L1 -486 5635 5601 10203 83 2 2 chrX 70552708 70554905 -106419235 + L1PA7 LINE L1 3959 6141 -13 303 280 155 77 chrX 70554905 70555057 -106419083 - L1ME4a LINE L1 -520 5601 5425 4241 179 34 39 chrX 70555528 70555637 -106418503 - L1MB2 LINE L1 -27 6144 6036 1761 142 67 45 chrX 70555637 70555967 -106418173 - MER1B DNA MER1_type 0 337 1 4241 179 34 39 chrX 70555967 70556753 -106417387 - L1MB2 LINE L1 -135 6036 5254 1669 228 57 43 chrX 70556824 70557337 -106416803 + MLT2B1 LTR ERVL 1 520 0 527 230 80 22 chrX 70558068 70558235 -106415905 + MIR SINE MIR 34 206 -56 14625 31 1 0 chrX 70560281 70562810 -106411330 + L1PA3 LINE L1 3606 6152 -3 296 222 83 0 chrX 70562893 70562965 -106411175 + L1M1 LINE L1 16 93 -7472 15723 175 23 22 chrX 70562987 70569232 -106404908 + L1M1 LINE L1 791 7042 -681 302 167 0 0 chrX 70619246 70619294 -106354846 - MER4B-int LTR ERV1 -3184 3574 3527 2891 66 0 5 chrX 70619295 70619674 -106354466 - L1PA5 LINE L1 -5 6149 5773 2274 36 0 0 chrX 70619674 70619950 -106354190 - L1P LINE L1 -990 5156 4881 637 198 0 8 chrX 70619950 70620071 -106354069 - MER4B-int LTR ERV1 -3218 3540 3421 253 213 12 12 chrX 70620079 70620159 -106353981 - MER4B-int LTR ERV1 -3672 3086 3007 3775 57 2 0 chrX 70620194 70620667 -106353473 - L1PA5 LINE L1 -1 6153 5680 3498 58 4 2 chrX 70620667 70621131 -106353009 - L1PA5 LINE L1 -951 5195 4731 1643 165 86 92 chrX 70621131 70621600 -106352540 + LTR1B LTR ERV1 358 826 0 2174 187 45 34 chrX 70621654 70622509 -106351631 + L1MC/D LINE L1 4871 5744 -615 514 249 21 37 chrX 70622520 70622709 -106351431 - L2 LINE L2 -684 2630 2445 198 252 171 24 chrX 70622968 70623091 -106351049 - MIR SINE MIR -108 154 14 361 211 45 96 chrX 70623462 70623618 -106350522 - L1MDa LINE L1 -3959 2581 2434 551 313 30 36 chrX 70623986 70624318 -106349822 - HAL1 LINE L1 -753 1754 1425 2902 121 15 37 chrX 70626229 70626836 -106347304 + MER4E LTR ERV1 1 766 0 7127 119 62 17 chrX 70626838 70627929 -106346211 + MER4E-int LTR ERV1 3 1108 -5650 243 88 0 0 chrX 70627929 70627963 -106346177 + (TG)n Simple_repeat Simple_repeat 1 34 0 7127 119 62 17 chrX 70627963 70628040 -106346100 + MER4E-int LTR ERV1 1108 1180 -5578 * 7745 102 71 31 chrX 70628016 70628909 -106345231 + MER4E-int LTR ERV1 1435 1950 -4808 3389 167 74 59 chrX 70628909 70629723 -106344417 - LTR1B LTR ERV1 0 826 1 7745 102 71 31 chrX 70629723 70630736 -106343404 + MER4E-int LTR ERV1 1950 2921 -3837 1099 139 70 0 chrX 70630743 70630915 -106343225 + MER4E-int LTR ERV1 3905 4088 -2670 * 6372 130 72 13 chrX 70630914 70632969 -106341171 + MER4E-int LTR ERV1 4452 6674 -84 5231 104 117 116 chrX 70632969 70634512 -106339628 + pTR5 LTR ERV1 743 2438 0 689 60 0 0 chrX 70634516 70634600 -106339540 + MER4E-int LTR ERV1 6672 6755 -3 2999 120 20 15 chrX 70634605 70635199 -106338941 + MER4E LTR ERV1 3 766 0 22 0 0 0 chrX 70635537 70635559 -106338581 + AT_rich Low_complexity Low_complexity 1 22 0 270 176 0 0 chrX 70635886 70635937 -106338203 + (TA)n Simple_repeat Simple_repeat 2 52 0 33 66 0 0 chrX 70636418 70636479 -106337661 + AT_rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chrX 70637141 70637162 -106336978 + AT_rich Low_complexity Low_complexity 1 21 0 1873 138 7 3 chrX 70637665 70637947 -106336193 - AluSx SINE Alu -29 283 1 1182 156 67 9 chrX 70638036 70638260 -106335880 - MER89 LTR ERV1 0 559 323 4771 74 24 1 chrX 70638260 70639268 -106334872 - MER11A LTR ERVK 0 1266 1 816 176 8 15 chrX 70639268 70639498 -106334642 - MER89 LTR ERV1 -231 328 1 5912 106 2 1 chrX 70639934 70641531 -106332609 - L1PA14 LINE L1 0 6161 4550 5320 149 169 0 chrX 70641531 70641931 -106332209 - L1P LINE L1 -933 5213 4081 22 35 0 0 chrX 70642834 70642863 -106331277 + AT_rich Low_complexity Low_complexity 1 29 0 425 283 66 37 chrX 70644184 70644428 -106329712 + L2 LINE L2 3063 3313 0 7887 100 6 1 chrX 70644506 70645579 -106328561 + THE1-int LTR MaLR 142 1219 -361 3083 48 0 0 chrX 70646065 70646438 -106327702 - L1PA6 LINE L1 -4 6150 5778 1021 174 47 28 chrX 70646563 70646775 -106327365 - MER20 DNA MER1_type -3 216 1 1344 206 91 72 chrX 70647476 70647531 -106326609 + Charlie4a DNA MER1_type 24 76 -1885 2250 92 3 25 chrX 70647531 70647847 -106326293 + AluY SINE Alu 1 309 -2 1344 206 91 72 chrX 70647847 70648251 -106325889 + Charlie4a DNA MER1_type 76 492 -16 261 233 0 0 chrX 70648516 70648559 -106325581 - L2 LINE L2 -19 3253 3211 302 311 68 47 chrX 70648641 70648789 -106325351 + MIR SINE MIR 59 209 -53 289 256 26 60 chrX 70649483 70649600 -106324540 + HAL1b LINE L1 799 911 -437 5645 130 19 3 chrX 70650116 70651298 -106322842 - L1PA13 LINE L1 -23 6140 4942 445 301 22 18 chrX 70651297 70651526 -106322614 - L1M4 LINE L1 -2592 3554 3325 * 1026 269 39 0 chrX 70651515 70651772 -106322368 - L1MDa LINE L1 -6256 284 18 226 323 68 63 chrX 70651782 70652139 -106322001 + L2 LINE L2 2699 3055 -258 220 292 83 52 chrX 70652326 70652422 -106321718 + L2 LINE L2 3164 3262 -10 2701 131 48 10 chrX 70652670 70653167 -106320973 - L1MA2 LINE L1 0 6304 5789 391 131 0 0 chrX 70653168 70653229 -106320911 + L1MA2 LINE L1 5750 5810 -495 3544 67 0 2 chrX 70653662 70654107 -106320033 - MLT2A1 LTR ERVL 0 444 1 34 0 0 0 chrX 70654759 70654793 -106319347 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chrX 70654944 70654971 -106319169 + AT_rich Low_complexity Low_complexity 1 27 0 270 148 0 0 chrX 70655411 70655465 -106318675 + (GA)n Simple_repeat Simple_repeat 2 55 0 2455 74 0 10 chrX 70656010 70656321 -106317819 + AluY SINE Alu 2 309 -2 2156 121 0 0 chrX 70656408 70656698 -106317442 + AluSx SINE Alu 1 290 -22 35 0 0 0 chrX 70656699 70656734 -106317406 + AT_rich Low_complexity Low_complexity 1 35 0 524 271 83 110 chrX 70656810 70657183 -106316957 + MLT1I LTR MaLR 22 384 -25 186 43 0 0 chrX 70659318 70659341 -106314799 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 0 0 0 chrX 70660335 70660360 -106313780 + AT_rich Low_complexity Low_complexity 1 25 0 346 321 30 89 chrX 70660373 70660610 -106313530 + L1M4 LINE L1 1 223 -6319 5138 246 74 17 chrX 70660896 70663455 -106310685 + L1M4 LINE L1 787 3488 -3156 584 227 75 6 chrX 70663477 70663716 -106310424 + L1M4 LINE L1 1742 2049 -4516 * 1330 212 31 44 chrX 70663715 70663820 -106310320 + L1M4 LINE L1 4636 4741 -1903 2399 57 40 3 chrX 70663820 70664120 -106310020 + AluY SINE Alu 1 311 0 1330 212 31 44 chrX 70664120 70664466 -106309674 + L1M4 LINE L1 4741 5081 -1563 1149 295 38 8 chrX 70664467 70664864 -106309276 + L2 LINE L2 1380 1788 -1526 370 284 37 9 chrX 70664901 70665010 -106309130 - L2 LINE L2 -920 2394 2283 233 284 88 29 chrX 70665016 70665118 -106309022 - MIR SINE MIR -125 137 30 203 269 58 0 chrX 70665164 70665216 -106308924 - L2 LINE L2 0 3313 3259 1424 168 198 28 chrX 70665256 70665619 -106308521 + MSTA LTR MaLR 1 425 -3 8732 158 9 40 chrX 70665624 70667253 -106306887 + MSTA-int LTR MaLR 3 1580 0 1749 176 137 13 chrX 70667253 70667634 -106306506 + MSTA LTR MaLR 1 428 0 4104 98 2 0 chrX 70669029 70669582 -106304558 + MER41A LTR ERV1 1 554 0 4788 147 60 1 chrX 70669667 70670469 -106303671 + MER41A-int LTR ERV1 1 859 -5087 * 13264 156 43 38 chrX 70670456 70670836 -106303304 + MER41A-int LTR ERV1 1053 1430 -4516 14521 27 0 0 chrX 70670836 70673318 -106300822 - L1PA3 LINE L1 -3 6152 3670 13264 156 43 38 chrX 70673318 70675095 -106299045 + MER41A-int LTR ERV1 1430 3196 -2750 2341 85 0 3 chrX 70675095 70675388 -106298752 - AluSq SINE Alu -21 292 1 13264 156 43 38 chrX 70675388 70676859 -106297281 + MER41A-int LTR ERV1 3196 5946 0 1103 134 6 0 chrX 70676859 70677030 -106297110 + MER41A LTR ERV1 3 174 -380 3687 131 31 2 chrX 70677041 70677592 -106296548 + L1PA7 LINE L1 11 577 -5884 18740 100 15 0 chrX 70677593 70681083 -106293057 + L1PA7 LINE L1 2958 6469 0 2777 112 2 5 chrX 70681085 70681479 -106292661 + MER41A LTR ERV1 162 554 0 2211 138 3 0 chrX 70681479 70681813 -106292327 - L1PA13 LINE L1 -30 6133 5799 511 207 153 9 chrX 70681813 70681924 -106292216 + LTR29 LTR ERV1 495 621 -1 23 65 0 16 chrX 70682284 70682297 -106291843 + AT_rich Low_complexity Low_complexity 1 13 -48 6098 101 3 6 chrX 70682297 70683338 -106290802 - L1PA8A LINE L1 -13 6118 5080 23 65 0 16 chrX 70683338 70683386 -106290754 + AT_rich Low_complexity Low_complexity 13 61 0 5908 192 6 4 chrX 70683489 70684656 -106289484 - L1P LINE L1 -1687 4459 3291 4758 189 11 0 chrX 70684663 70685601 -106288539 + L1P LINE L1 4456 5403 -743 2410 31 6 19 chrX 70685598 70685906 -106288234 + L1PA14 LINE L1 4990 5295 -851 * 2051 33 0 0 chrX 70685906 70686147 -106287993 + L1PA3 LINE L1 5915 6155 0 2410 31 6 19 chrX 70686147 70686159 -106287981 + L1PA14 LINE L1 5295 5306 -840 5226 119 4 0 chrX 70686170 70686944 -106287196 + L1PA14 LINE L1 5385 6161 0 3822 223 64 18 chrX 70688055 70688251 -106285889 + L1MA4 LINE L1 4540 4726 -3316 1908 162 118 21 chrX 70688251 70688640 -106285500 - MSTA LTR MaLR -1 427 1 3822 223 64 18 chrX 70688640 70689823 -106284317 + L1MA4 LINE L1 4726 5854 -2188 2669 149 35 0 chrX 70689823 70690285 -106283855 + L1MA4 LINE L1 5801 6299 -1 3822 223 64 18 chrX 70690285 70692027 -106282113 + L1MA4 LINE L1 5854 7899 -143 25 0 0 0 chrX 70692556 70692581 -106281559 + AT_rich Low_complexity Low_complexity 1 25 0 16900 175 14 7 chrX 70693277 70697510 -106276630 - L1PA13 LINE L1 -1 6813 2557 12639 197 26 3 chrX 70697500 70699723 -106274417 - L1PA13 LINE L1 -4514 2273 1 * 359 248 50 30 chrX 70699731 70699887 -106274253 - L1MEc LINE L1 -4731 1653 1499 446 216 257 20 chrX 70699887 70700035 -106274105 + MER58C DNA MER1_type 1 183 -32 550 303 82 46 chrX 70700040 70700628 -106273512 - L1MEc LINE L1 -4879 1505 897 489 358 24 21 chrX 70700710 70701090 -106273050 - L1MEc LINE L1 -5981 582 202 923 293 8 16 chrX 70701225 70701478 -106272662 - MIR SINE MIR -10 252 2 8998 192 57 3 chrX 70701604 70704630 -106269510 + L1PB3 LINE L1 2959 6151 -3 22 56 0 0 chrX 70705115 70705151 -106268989 + AT_rich Low_complexity Low_complexity 1 36 0 192 278 42 14 chrX 70705181 70705253 -106268887 + MIR3 SINE MIR 119 192 -16 2679 104 52 2 chrX 70705253 70705675 -106268465 - L1PB2 LINE L1 0 6151 5709 430 262 21 69 chrX 70705979 70706124 -106268016 + L2 LINE L2 2955 3092 -221 329 161 27 154 chrX 70706369 70706518 -106267622 - L1MDa LINE L1 -3994 2546 2417 21 71 0 0 chrX 70707022 70707064 -106267076 + AT_rich Low_complexity Low_complexity 1 42 0 373 261 65 43 chrX 70707409 70707593 -106266547 + MER5A DNA MER1_type 2 189 0 299 342 33 0 chrX 70707735 70707855 -106266285 + MIR SINE MIR 66 189 -73 1756 180 58 22 chrX 70708368 70708730 -106265410 + THE1C LTR MaLR 1 375 0 3791 130 90 70 chrX 70709532 70709702 -106264438 + LTR1 LTR ERV1 1 166 -619 2014 152 0 3 chrX 70709702 70709999 -106264141 + AluSg SINE Alu 1 296 -14 3791 130 90 70 chrX 70709999 70710598 -106263542 + LTR1 LTR ERV1 166 785 0 195 186 80 88 chrX 70710895 70711008 -106263132 + L2 LINE L2 1835 1946 -1368 3299 37 0 2 chrX 70711269 70711672 -106262468 + L1PA5 LINE L1 5753 6154 0 1763 148 50 0 chrX 70711907 70712190 -106261950 - AluSx SINE Alu -15 297 1 215 324 9 74 chrX 70713642 70713750 -106260390 - L2 LINE L2 -64 3208 3108 24 32 0 0 chrX 70714071 70714102 -106260038 + AT_rich Low_complexity Low_complexity 1 31 0 494 275 228 9 chrX 70714205 70714416 -106259724 - MIR SINE MIR -4 258 2 1241 180 11 4 chrX 70715149 70715410 -106258730 - L1MA4 LINE L1 -7 6293 6031 305 289 173 0 chrX 70716027 70716131 -106258009 - MIR3 SINE MIR 0 208 87 21 0 0 0 chrX 70716208 70716229 -106257911 + AT_rich Low_complexity Low_complexity 1 21 0 1382 12 6 0 chrX 70716274 70716435 -106257705 + L1HS LINE L1 5994 6155 0 1693 175 10 0 chrX 70717158 70717450 -106256690 + AluSx SINE Alu 1 295 -17 2057 117 13 7 chrX 70717941 70718248 -106255892 - AluSc SINE Alu 0 309 1 384 317 144 0 chrX 70718421 70718623 -106255517 + MIR SINE MIR 25 255 -7 257 330 87 64 chrX 70718773 70718946 -106255194 + MIR3 SINE MIR 20 196 -12 23 0 0 0 chrX 70722256 70722279 -106251861 + AT_rich Low_complexity Low_complexity 1 23 0 13172 199 14 9 chrX 70722902 70726598 -106247542 + L1PA13 LINE L1 2452 6163 0 2688 46 3 0 chrX 70727956 70728279 -106245861 - LTR17 LTR ERV1 -456 324 1 547 31 0 0 chrX 70728279 70728343 -106245797 - HERV17 LTR ERV1 0 8626 8563 1469 198 12 9 chrX 70731355 70731685 -106242455 + L1 LINE L1 4083 4416 -1730 3251 124 28 15 chrX 70731685 70732213 -106241927 + L1PB2 LINE L1 5602 6149 -2 1469 198 12 9 chrX 70732213 70732225 -106241915 + L1 LINE L1 4416 4426 -1720 368 175 0 12 chrX 70732257 70732337 -106241803 - L1M4 LINE L1 -1053 5093 5015 27 62 0 0 chrX 70732337 70732385 -106241755 + AT_rich Low_complexity Low_complexity 1 48 0 184 259 0 21 chrX 70734139 70734282 -106239858 + CT-rich Low_complexity Low_complexity 1 140 0 272 272 22 0 chrX 70735078 70735170 -106238970 - L1M4 LINE L1 -1198 4948 4855 4357 185 23 8 chrX 70735176 70736127 -106238013 + L1MC1 LINE L1 5186 6271 -62 1766 170 3 3 chrX 70736131 70736419 -106237721 - AluJo SINE Alu -24 288 1 1937 280 63 10 chrX 70736422 70737235 -106236905 - L1M4 LINE L1 -1441 4705 3850 1738 240 163 16 chrX 70737211 70737977 -106236163 - L1M4 LINE L1 -2646 3500 2622 * 1509 220 139 44 chrX 70738066 70738584 -106235556 + MLT1F1 LTR MaLR 1 567 0 2797 277 58 38 chrX 70739210 70739576 -106234564 + L2 LINE L2 1831 2188 -1125 284 83 21 0 chrX 70739576 70739624 -106234516 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 2797 277 58 38 chrX 70739624 70740287 -106233853 + L2 LINE L2 2188 2931 -382 3066 160 38 61 chrX 70740287 70740994 -106233146 - LTR8 LTR ERV1 0 691 1 2797 277 58 38 chrX 70740994 70741091 -106233049 + L2 LINE L2 2931 3025 -288 981 104 7 0 chrX 70741091 70741226 -106232914 + L1P3 LINE L1 1 136 -6325 497 80 13 13 chrX 70741227 70741302 -106232838 + MER68 LTR ERV1 13 87 -475 2336 206 32 24 chrX 70741307 70741842 -106232298 + HERVL68 LTR ERVL 1223 1761 -1276 3047 111 7 5 chrX 70741842 70742266 -106231874 - MER61B LTR ERV1 0 425 1 6149 131 38 12 chrX 70742266 70743302 -106230838 - MER61B-int LTR ERV1 0 5217 4155 * 6218 78 13 22 chrX 70743293 70744279 -106229861 - MER61B-int LTR ERV1 -2880 2337 1361 2571 86 4 66 chrX 70744274 70744373 -106229767 - MER61B-int LTR ERV1 -2741 2139 2035 * 2177 101 3 0 chrX 70744373 70744660 -106229480 + AluSc SINE Alu 1 288 -21 2571 86 4 66 chrX 70744660 70745011 -106229129 - MER61B-int LTR ERV1 -2845 2035 818 2367 112 109 22 chrX 70745011 70745468 -106228672 - LTR21A LTR ERV1 -8 497 1 23232 101 6 1 chrX 70745468 70748907 -106225233 - HERVFH21 LTR ERV1 0 6529 3074 17099 62 5 1 chrX 70748904 70751181 -106222959 - HERVFH21 LTR ERV1 -4238 2291 5 * 2484 110 101 22 chrX 70751181 70751635 -106222505 - LTR21A LTR ERV1 -15 490 1 2703 93 12 52 chrX 70751635 70752117 -106222023 - MER61B-int LTR ERV1 -4415 802 340 549 153 9 36 chrX 70752249 70752360 -106221780 - MER61B-int LTR ERV1 -5109 108 1 3141 90 7 2 chrX 70752360 70752783 -106221357 - MER61B LTR ERV1 0 425 1 4975 167 82 32 chrX 70752783 70753984 -106220156 + HERVL68 LTR ERVL 1758 3018 -19 1373 205 11 4 chrX 70753998 70754266 -106219874 + MER68 LTR ERV1 1 270 -292 818 215 82 5 chrX 70754283 70754502 -106219638 + L1M4b LINE L1 13 248 -6611 2110 158 18 51 chrX 70754536 70755107 -106219033 - MER61D LTR ERV1 -15 504 1 1664 281 40 12 chrX 70755110 70755609 -106218531 + L1M4b LINE L1 280 792 -6067 672 202 29 87 chrX 70755609 70755817 -106218323 + MLT1A1 LTR MaLR 1 196 -169 1004 278 58 24 chrX 70755848 70756622 -106217518 + L1M4b LINE L1 2565 3324 -3633 5074 247 55 3 chrX 70756695 70757543 -106216597 + L1M4b LINE L1 3436 4239 -2718 1910 163 0 13 chrX 70757543 70757849 -106216291 + AluJb SINE Alu 1 302 -10 5074 247 55 3 chrX 70757849 70758781 -106215359 + L1M4b LINE L1 4239 5308 -1649 1022 154 0 36 chrX 70758797 70758850 -106215290 + L1P4 LINE L1 16 69 -6780 3941 80 20 7 chrX 70758850 70759397 -106214743 + MER41A LTR ERV1 1 554 0 1022 154 0 36 chrX 70759397 70759538 -106214602 + L1P4 LINE L1 69 203 -6646 11373 207 59 9 chrX 70759542 70763656 -106210484 + L1P4 LINE L1 740 5181 -1688 1961 135 3 3 chrX 70763656 70763981 -106210159 + AluSx SINE Alu 2 326 0 11373 207 59 9 chrX 70763981 70764996 -106209144 + L1P4 LINE L1 5181 6144 -725 13071 192 40 14 chrX 70764998 70766690 -106207450 + L1PA15 LINE L1 23 1669 -5896 384 22 0 0 chrX 70766690 70766735 -106207405 + (GA)n Simple_repeat Simple_repeat 2 46 0 13071 192 40 14 chrX 70766735 70767799 -106206341 + L1PA15 LINE L1 1669 2854 -4711 414 0 0 0 chrX 70767799 70767845 -106206295 + (CA)n Simple_repeat Simple_repeat 2 47 0 6470 187 64 46 chrX 70767859 70769979 -106204161 + L1PA15 LINE L1 3413 5563 -2002 23 54 0 0 chrX 70770242 70770279 -106203861 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chrX 70770815 70770838 -106203302 + AT_rich Low_complexity Low_complexity 1 23 0 5321 128 12 42 chrX 70773747 70775331 -106198809 + L1PA15 LINE L1 6034 7576 -8 26 0 0 0 chrX 70775939 70775965 -106198175 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chrX 70776320 70776343 -106197797 + (TG)n Simple_repeat Simple_repeat 2 24 0 659 211 22 79 chrX 70777020 70777247 -106196893 + MER58C DNA MER1_type 2 215 0 415 211 0 70 chrX 70778516 70778630 -106195510 + LTR60 LTR ERV1 1 106 -480 1417 170 14 112 chrX 70779123 70779552 -106194588 + LTR60 LTR ERV1 163 549 -37 1064 173 8 111 chrX 70779379 70779732 -106194408 + TAR1 Satellite telomeric 4 320 -1791 * 3330 116 10 21 chrX 70779834 70780449 -106193691 + MER4B LTR ERV1 2 775 -4 651 251 49 29 chrX 70780495 70780738 -106193402 + MER4B-int LTR ERV1 109 356 -6849 401 280 18 12 chrX 70781597 70781765 -106192375 + MER57A-int LTR ERV1 1707 1875 -5216 2700 318 42 19 chrX 70781896 70782987 -106191153 + MER57A-int LTR ERV1 2168 3283 -3922 3514 151 1 15 chrX 70783000 70783651 -106190489 + MER57A-int LTR ERV1 5149 5790 -1747 741 138 17 0 chrX 70783652 70783768 -106190372 + AluSg/x SINE Alu 179 296 -16 1698 199 3 22 chrX 70784150 70784512 -106189628 + MER57A-int LTR ERV1 5825 6179 -1358 410 174 20 0 chrX 70784524 70784622 -106189518 + MER113 DNA MER1_type? 124 223 -298 4845 178 26 12 chrX 70784622 70785589 -106188551 + MER57A-int LTR ERV1 6170 7149 -388 635 145 23 30 chrX 70785589 70785720 -106188420 + LTR54B LTR ERV1 6 135 -363 1255 146 18 0 chrX 70785720 70785946 -106188194 + MER57A-int LTR ERV1 7287 7516 -21 2171 178 10 2 chrX 70785955 70786353 -106187787 + MER57A LTR ERV1 3 403 0 340 168 30 69 chrX 70786354 70786455 -106187685 + MER67C LTR ERV1 305 401 -309 * 378 256 8 68 chrX 70786426 70786668 -106187472 + MER67D LTR ERV1 273 529 -14 16995 39 0 6 chrX 70786908 70789775 -106184365 - L1PA4 LINE L1 -8 6147 3293 5953 61 20 11 chrX 70789775 70790212 -106183928 + L1PA8 LINE L1 5376 5828 -344 2377 56 7 7 chrX 70790212 70790514 -106183626 + AluY SINE Alu 1 302 -9 5953 61 20 11 chrX 70790514 70790863 -106183277 + L1PA8 LINE L1 5828 6172 0 1121 141 11 0 chrX 70790865 70791050 -106183090 + L1PB1 LINE L1 5959 6145 -6 21 57 0 0 chrX 70791051 70791086 -106183054 + AT_rich Low_complexity Low_complexity 1 35 0 2295 121 3 0 chrX 70791617 70791947 -106182193 + MLT2A2 LTR ERVL 123 453 0 1073 70 57 32 chrX 70791947 70792104 -106182036 + HERVL-A2 LTR ERVL 1 161 -5493 398 61 0 0 chrX 70792094 70792143 -106181997 - HERVL LTR ERVL -5536 118 70 * 455 108 0 0 chrX 70792154 70792219 -106181921 - HERVL LTR ERVL -5491 163 99 * 1475 60 0 0 chrX 70792217 70792402 -106181738 + HERVL-A2 LTR ERVL 165 349 -5305 204 40 0 0 chrX 70792402 70792427 -106181713 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1146 133 17 0 chrX 70792730 70792910 -106181230 + L1PB1 LINE L1 5952 6134 -17 816 138 7 0 chrX 70793094 70793232 -106180908 + L1PB1 LINE L1 6012 6150 -1 4212 154 102 36 chrX 70793675 70794541 -106179599 + MER49 LTR ERV1 1 923 0 858 182 23 11 chrX 70794972 70795148 -106178992 + MER101B LTR ERV1 1 178 -392 739 161 84 0 chrX 70795769 70795924 -106178216 - L1MA8 LINE L1 -6 6285 6118 2486 164 7 12 chrX 70795925 70796357 -106177783 + L1MA8 LINE L1 5668 6097 -194 8088 73 1 0 chrX 70796611 70798475 -106175665 + L1PA6 LINE L1 4289 6153 -1 300 111 0 0 chrX 70799216 70799261 -106174879 + (TG)n Simple_repeat Simple_repeat 1 45 0 211 337 12 24 chrX 70799835 70799918 -106174222 - L3 LINE CR1 -8 1569 1488 1807 243 56 49 chrX 70800134 70800686 -106173454 - MER68 LTR ERV1 -6 556 1 1067 284 94 7 chrX 70800794 70801620 -106172520 + L1ME LINE L1 4729 5625 -537 2201 129 116 10 chrX 70801909 70802296 -106171844 - MSTA LTR MaLR 0 428 1 24 0 0 0 chrX 70802321 70802345 -106171795 + AT_rich Low_complexity Low_complexity 1 24 0 983 197 0 165 chrX 70804842 70805121 -106169019 + MER8 DNA MER2_type 7 239 0 23 33 0 0 chrX 70805225 70805255 -106168885 + AT_rich Low_complexity Low_complexity 1 30 0 183 156 0 0 chrX 70805332 70805364 -106168776 + (TA)n Simple_repeat Simple_repeat 1 32 0 228 222 0 0 chrX 70805403 70805466 -106168674 + LTR66 LTR ERVL 395 457 -153 2959 112 0 0 chrX 70805467 70805894 -106168246 - L1P5 LINE L1 -392 5759 5333 260 234 96 48 chrX 70805991 70806158 -106167982 + L1MEc LINE L1 2230 2404 -3992 324 305 62 22 chrX 70806450 70806897 -106167243 + L1MEc LINE L1 2728 3244 -2971 276 210 89 57 chrX 70806907 70807064 -106167076 + L1M LINE L1 5258 5419 -878 303 93 0 0 chrX 70807158 70807201 -106166939 + (TA)n Simple_repeat Simple_repeat 1 43 0 919 176 0 27 chrX 70807481 70807669 -106166471 - L1MA7 LINE L1 -163 6128 5946 747 164 50 0 chrX 70807673 70807832 -106166308 + L1MA7 LINE L1 6125 6291 0 2043 107 0 37 chrX 70807906 70808204 -106165936 - AluSg SINE Alu -13 297 11 180 0 0 0 chrX 70808214 70808234 -106165906 + (A)n Simple_repeat Simple_repeat 1 20 0 303 259 86 37 chrX 70808234 70808396 -106165744 + L1M4 LINE L1 4457 4626 -1520 7807 242 42 88 chrX 70808397 70813985 -106160155 + L1MA6 LINE L1 3 5016 -2151 441 0 0 0 chrX 70813985 70814034 -106160106 + (CA)n Simple_repeat Simple_repeat 2 50 0 7807 242 42 88 chrX 70814034 70814406 -106159734 + L1MA6 LINE L1 5016 5404 -1763 1027 119 0 88 chrX 70814614 70814808 -106159332 - L1MA2 LINE L1 -2 7721 7545 18541 183 20 20 chrX 70814859 70820922 -106153218 - L1MA2 LINE L1 -154 7569 1489 4607 28 0 4 chrX 70820922 70821465 -106152675 + L1PA3 LINE L1 5615 6155 0 18541 183 20 20 chrX 70821465 70822940 -106151200 - L1MA2 LINE L1 -6234 1489 16 677 194 230 2 chrX 70823110 70823383 -106150757 + L1MA10 LINE L1 5813 6329 -5 4647 190 63 4 chrX 70823412 70825217 -106148923 + L1MA6 LINE L1 5408 7321 0 2620 216 52 23 chrX 70825231 70826471 -106147669 + L1MB7 LINE L1 4645 5906 -278 1857 200 45 5 chrX 70826472 70826872 -106147268 - L1PB4 LINE L1 -1 6155 5740 660 251 0 6 chrX 70826887 70827054 -106147086 + L1MB7 LINE L1 6010 6175 -9 885 272 92 4 chrX 70828028 70828267 -106145873 + MIR SINE MIR 3 262 0 5934 117 42 4 chrX 70829202 70830508 -106143632 - L1PA11 LINE L1 -4 6170 4839 935 236 104 29 chrX 70830518 70830788 -106143352 + MER61C LTR ERV1 18 404 -30 3699 164 66 53 chrX 70830794 70831623 -106142517 + MER61C-int LTR ERV1 2 841 -4376 8569 106 26 39 chrX 70831624 70833367 -106140773 + MER61C-int LTR ERV1 960 2776 -2441 349 152 0 15 chrX 70833367 70833433 -106140707 + L1P LINE L1 3547 3611 -2535 * 13400 186 29 8 chrX 70833425 70835513 -106138627 + L1MA1 LINE L1 1270 3313 -4408 330 26 0 0 chrX 70835513 70835552 -106138588 + (CA)n Simple_repeat Simple_repeat 2 40 0 13400 186 29 8 chrX 70835552 70836475 -106137665 + L1MA1 LINE L1 3313 4215 -3506 2267 88 0 0 chrX 70836475 70836781 -106137359 + AluSx SINE Alu 1 306 0 13400 186 29 8 chrX 70836781 70840086 -106134054 + L1MA1 LINE L1 4215 7721 0 2224 209 94 64 chrX 70840087 70841043 -106133097 + L1ME2 LINE L1 5173 6151 -13 1030 277 105 58 chrX 70841302 70841826 -106132314 + L2 LINE L2 2761 3313 0 273 260 26 0 chrX 70841963 70842040 -106132100 + MIR SINE MIR 184 262 0 650 301 175 36 chrX 70842054 70842522 -106131618 + L3 LINE CR1 930 1462 -115 515 305 82 17 chrX 70842536 70842769 -106131371 + MIR SINE MIR 4 251 -11 225 312 65 0 chrX 70842770 70842847 -106131293 + L3 LINE CR1 1495 1576 -1 251 224 52 30 chrX 70845205 70845339 -106128801 - L1MEc LINE L1 -4088 2308 2172 21 57 0 0 chrX 70845673 70845708 -106128432 + AT_rich Low_complexity Low_complexity 1 35 0 876 269 47 4 chrX 70845713 70845992 -106128148 - L1ME3 LINE L1 -32 6130 5840 360 268 70 17 chrX 70846009 70846256 -106127884 - L1MCa LINE L1 -3839 2587 2326 1426 226 88 16 chrX 70846330 70846760 -106127380 + Charlie1b DNA MER1_type 1 461 -62 5453 133 10 30 chrX 70846763 70847601 -106126539 - L1PA16 LINE L1 -1 6165 5312 1557 201 17 0 chrX 70847601 70847894 -106126246 - AluSx SINE Alu -13 299 2 5453 133 10 30 chrX 70847894 70848134 -106126006 - L1PA16 LINE L1 -854 5312 5069 1842 184 35 19 chrX 70848134 70848503 -106125637 - THE1C LTR MaLR 0 375 1 5453 133 10 30 chrX 70848503 70849051 -106125089 - L1PA16 LINE L1 -1097 5069 4549 180 0 0 0 chrX 70849068 70849088 -106125052 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 807 120 0 0 chrX 70849088 70849205 -106124935 - L1PB1 LINE L1 -6 6145 6029 13183 203 35 10 chrX 70849205 70851567 -106122573 - L1PB1 LINE L1 -66 6801 4499 186 43 0 0 chrX 70851567 70851590 -106122550 + (TTG)n Simple_repeat Simple_repeat 2 24 0 13183 203 35 10 chrX 70851590 70852733 -106121407 - L1PB1 LINE L1 -2368 4499 3386 2044 150 55 3 chrX 70852733 70853079 -106121061 + THE1B LTR MaLR 1 364 0 13183 203 35 10 chrX 70853079 70854082 -106120058 - L1PB1 LINE L1 -3481 3386 2409 1921 163 10 3 chrX 70854082 70854388 -106119752 - AluSx SINE Alu -2 310 3 13183 203 35 10 chrX 70854388 70855254 -106118886 - L1PB1 LINE L1 -4458 2409 1292 6280 151 61 7 chrX 70855258 70856358 -106117782 - L1PB1 LINE L1 -5704 1159 1 881 233 12 8 chrX 70856368 70856613 -106117527 - L1 LINE L1 -1584 4562 4317 1118 159 0 26 chrX 70856613 70856808 -106117332 + AluJo SINE Alu 87 276 -36 321 206 0 0 chrX 70856813 70856886 -106117254 - L1 LINE L1 -1812 4334 4262 325 217 0 0 chrX 70856889 70856958 -106117182 + Charlie1b DNA MER1_type 446 514 -9 376 258 112 25 chrX 70857064 70857352 -106116788 - L1M1 LINE L1 -4456 3290 2887 235 200 0 0 chrX 70857447 70857482 -106116658 + MER81 DNA DNA 1 35 -79 501 274 94 46 chrX 70857544 70858251 -106115889 - L1MEc LINE L1 -4837 1559 692 1759 128 15 70 chrX 70858553 70858881 -106115259 + AluSx SINE Alu 1 310 -2 278 285 42 42 chrX 70859077 70859221 -106114919 - L1MEc LINE L1 -6194 202 59 1998 121 73 17 chrX 70859351 70859706 -106114434 + THE1C LTR MaLR 1 375 0 297 293 33 85 chrX 70859724 70860076 -106114064 - L1MEd LINE L1 -919 1571 1148 2312 96 3 0 chrX 70860076 70860379 -106113761 - AluSg SINE Alu -6 304 1 297 293 33 85 chrX 70860379 70860504 -106113636 - L1MEd LINE L1 -1342 1148 1018 283 241 0 0 chrX 70860738 70860796 -106113344 + LTR40a LTR ERVL 1 58 -461 744 256 93 84 chrX 70860978 70861405 -106112735 + L1MC2 LINE L1 608 1043 -5499 1145 243 16 36 chrX 70861405 70861710 -106112430 - AluJo SINE Alu -1 301 3 744 256 93 84 chrX 70861710 70861841 -106112299 + L1MC2 LINE L1 1043 1171 -5371 * 12853 205 27 13 chrX 70861833 70866194 -106107946 + L1PB2 LINE L1 1733 6151 0 463 196 62 9 chrX 70866204 70866316 -106107824 + L1MC2 LINE L1 6220 6337 -7 * 636 282 12 8 chrX 70866310 70866558 -106107582 + L1MC2 LINE L1 2803 3051 -3593 1219 220 61 0 chrX 70866563 70866719 -106107421 - AluJb SINE Alu -20 292 112 195 69 0 0 chrX 70866719 70866748 -106107392 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1219 220 61 0 chrX 70866748 70866855 -106107285 - AluJb SINE Alu -200 112 13 797 201 4 78 chrX 70866865 70867109 -106107031 + L1MC2 LINE L1 3045 3270 -3374 750 386 29 20 chrX 70867113 70867665 -106106475 + L1PA13 LINE L1 789 1345 -6229 332 313 0 0 chrX 70867769 70867865 -106106275 + L1PA13 LINE L1 2084 2179 -5402 238 255 0 0 chrX 70868099 70868150 -106105990 + L1PA13 LINE L1 2182 2232 -5349 4716 195 60 20 chrX 70868179 70869716 -106104424 + L1MC2 LINE L1 5232 6832 -10 3077 200 12 2 chrX 70869726 70870321 -106103819 + L1MB5 LINE L1 5551 6151 -23 2006 21 0 0 chrX 70870335 70870571 -106103569 - L1PA4 LINE L1 -8 6147 5912 22 35 0 0 chrX 70870986 70871015 -106103125 + AT_rich Low_complexity Low_complexity 1 29 0 191 333 83 46 chrX 70871204 70871312 -106102828 + MER5A DNA MER1_type 54 165 -24 207 316 71 71 chrX 70873444 70873507 -106100633 + MER5A DNA MER1_type 35 97 -92 387 293 17 50 chrX 70873507 70873688 -106100452 + MER5B DNA MER1_type 4 178 0 207 316 71 71 chrX 70873688 70873779 -106100361 + MER5A DNA MER1_type 96 189 0 30 0 0 0 chrX 70874929 70874959 -106099181 + AT_rich Low_complexity Low_complexity 1 30 0 446 265 74 49 chrX 70876133 70876295 -106097845 + MIR3 SINE MIR 17 182 -26 399 315 22 44 chrX 70877591 70877772 -106096368 + LTR16B LTR ERVL 3 179 -285 364 330 21 16 chrX 70877772 70877960 -106096180 - L1MEc LINE L1 -2489 3726 3538 413 314 24 35 chrX 70878004 70878173 -106095967 - LTR16B LTR ERVL -288 176 10 392 253 11 11 chrX 70878191 70878282 -106095858 - MER5A DNA MER1_type -85 104 14 437 286 61 34 chrX 70878439 70878522 -106095618 - L1MEc LINE L1 -2827 3388 3309 2121 125 0 0 chrX 70878522 70878840 -106095300 - AluSq SINE Alu 0 318 1 437 286 61 34 chrX 70878840 70879167 -106094973 - L1MEc LINE L1 -2906 3309 2966 218 152 0 22 chrX 70879198 70879244 -106094896 + (TA)n Simple_repeat Simple_repeat 1 45 0 504 302 83 18 chrX 70879274 70879612 -106094528 - L1MEc LINE L1 -3986 2410 2051 5565 134 27 1 chrX 70879765 70880769 -106093371 - L1PB1 LINE L1 -3 6148 5118 2449 191 10 8 chrX 70881244 70881735 -106092405 - L1PA16 LINE L1 -10 6156 5665 5235 253 18 1 chrX 70881735 70883155 -106090985 + L1 LINE L1 3882 5325 -821 1077 171 18 9 chrX 70883157 70883379 -106090761 + L1MA2 LINE L1 2521 2744 -4821 * 11925 198 23 12 chrX 70883351 70883841 -106090299 + L1MA2 LINE L1 3824 4307 -3416 10373 30 1 2 chrX 70883841 70885843 -106088297 + L1PA3 LINE L1 4154 6154 -1 11925 198 23 12 chrX 70885843 70889208 -106084932 + L1MA2 LINE L1 4307 7723 0 229 226 39 39 chrX 70889213 70889315 -106084825 - L1M4 LINE L1 -1053 5093 4992 * 7128 52 1 1 chrX 70889311 70890202 -106083938 - L1PA7 LINE L1 -5 6149 5259 2373 245 35 16 chrX 70890204 70891016 -106083124 - L1M4 LINE L1 -1146 5000 4174 5034 149 21 5 chrX 70891020 70892438 -106081702 - L1PA14 LINE L1 -4 7595 6177 22738 173 32 30 chrX 70892441 70895447 -106078693 - L1PA10 LINE L1 -4 6866 3867 369 0 0 0 chrX 70895447 70895488 -106078652 + (TG)n Simple_repeat Simple_repeat 2 42 0 22738 173 32 30 chrX 70895488 70898834 -106075306 - L1PA10 LINE L1 -3003 3867 2 9109 219 116 39 chrX 70898834 70902368 -106071772 - L1PA14 LINE L1 -1396 6188 2346 1472 238 36 84 chrX 70902969 70903612 -106070528 + LTR9 LTR ERV1 1 612 0 21 0 0 0 chrX 70904535 70904556 -106069584 + AT_rich Low_complexity Low_complexity 1 21 0 244 270 162 0 chrX 70904985 70905059 -106069081 + MIR SINE MIR 158 243 -19 237 283 0 0 chrX 70905195 70905248 -106068892 + CT-rich Low_complexity Low_complexity 1 53 0 456 295 82 82 chrX 70905279 70905736 -106068404 + MLT1L LTR MaLR 1 521 -94 435 286 124 28 chrX 70906893 70907071 -106067069 + MIR SINE MIR 58 252 -10 2027 215 19 26 chrX 70907084 70907545 -106066595 + MLT1C LTR MaLR 1 458 -9 3491 177 51 1 chrX 70907579 70908247 -106065893 + L1PA16 LINE L1 5465 6165 -1 3052 207 12 18 chrX 70908263 70908871 -106065269 + L1M3 LINE L1 4644 5254 -914 2353 127 11 3 chrX 70908871 70909232 -106064908 - THE1B LTR MaLR 0 364 1 10194 127 14 29 chrX 70909232 70910837 -106063303 - THE1B-int LTR MaLR 0 1580 1 2413 124 8 3 chrX 70910837 70911199 -106062941 - THE1B LTR MaLR 0 364 1 3052 207 12 18 chrX 70911199 70911583 -106062557 + L1M3 LINE L1 5251 5633 -535 4690 170 10 1 chrX 70911609 70912444 -106061696 - Tigger1 DNA MER2_type 0 2418 1577 30154 110 6 28 chrX 70912444 70918956 -106055184 - L1PA7 LINE L1 -8 6461 1 7301 152 122 16 chrX 70918957 70919253 -106054887 - Tigger1 DNA MER2_type -828 1590 1327 225 0 0 0 chrX 70919253 70919278 -106054862 + (TG)n Simple_repeat Simple_repeat 2 26 0 7301 152 122 16 chrX 70919278 70920393 -106053747 - Tigger1 DNA MER2_type -1091 1327 29 204 163 0 0 chrX 70920398 70920441 -106053699 + GA-rich Low_complexity Low_complexity 1 43 0 936 90 0 0 chrX 70921543 70921677 -106052463 + L1MA3 LINE L1 6172 6305 0 628 330 15 15 chrX 70922913 70923116 -106051024 + MIR3 SINE MIR 3 205 -3 2746 208 20 3 chrX 70923387 70923978 -106050162 - L1P LINE L1 -1522 4624 4024 9135 208 26 14 chrX 70923978 70926262 -106047878 - L1MDb LINE L1 -764 5642 3330 3586 33 0 0 chrX 70926265 70926784 -106047356 - L1PA2 LINE L1 -680 5475 4957 5554 12 55 0 chrX 70926784 70927431 -106046709 + L1PA2 LINE L1 5470 6155 0 2166 214 25 38 chrX 70927459 70928066 -106046074 - L1MDb LINE L1 -3104 3302 2704 812 248 35 9 chrX 70928065 70928295 -106045845 + L1 LINE L1 2213 2448 -3698 * 2183 305 55 45 chrX 70928281 70928331 -106045809 - L1MDb LINE L1 -5445 964 916 785 191 0 0 chrX 70928331 70928457 -106045683 - FLAM_A SINE Alu -7 126 1 2183 305 55 45 chrX 70928457 70929354 -106044786 - L1MDb LINE L1 -5493 916 8 4704 146 20 7 chrX 70929422 70930899 -106043241 - L1PA16 LINE L1 -2 6164 4679 265 273 45 23 chrX 70930970 70931058 -106043082 + MER5A DNA MER1_type 26 115 -74 22 0 0 0 chrX 70931228 70931250 -106042890 + AT_rich Low_complexity Low_complexity 1 22 0 1297 181 154 0 chrX 70931970 70932263 -106041877 - MER44D DNA MER2_type -1 608 1 211 341 35 24 chrX 70934146 70934231 -106039909 - L3b LINE CR1 -212 1371 1286 1026 291 70 10 chrX 70934452 70934864 -106039276 + MARNA DNA Mariner 33 469 -117 21 36 0 0 chrX 70936052 70936080 -106038060 + AT_rich Low_complexity Low_complexity 1 28 0 256 262 16 0 chrX 70936472 70936533 -106037607 + L2 LINE L2 3250 3311 -2 22 0 0 0 chrX 70937247 70937269 -106036871 + AT_rich Low_complexity Low_complexity 1 22 0 10287 200 73 15 chrX 70938220 70940849 -106033291 + L1MB8 LINE L1 1 2477 -4391 2243 52 7 0 chrX 70940849 70941140 -106033000 + L1PA4 LINE L1 5859 6151 -4 10287 200 73 15 chrX 70941140 70944168 -106029972 + L1MB8 LINE L1 2477 6027 -841 * 20926 164 43 1 chrX 70944162 70948156 -106025984 + L1MA3 LINE L1 1 4161 -3404 12131 171 20 10 chrX 70950011 70950186 -106023954 + L1MA3 LINE L1 4155 4327 -3397 2441 77 0 0 chrX 70950186 70950497 -106023643 + AluY SINE Alu 1 311 0 12131 171 20 10 chrX 70950497 70953557 -106020583 + L1MA3 LINE L1 4327 7426 -298 26 30 0 0 chrX 70953698 70953731 -106020409 + AT_rich Low_complexity Low_complexity 1 33 0 293 301 41 0 chrX 70953731 70953877 -106020263 + L1M4 LINE L1 4391 4542 -1604 1487 179 43 17 chrX 70953877 70954224 -106019916 + L1MB8 LINE L1 6524 6879 -1 263 268 21 82 chrX 70954298 70954395 -106019745 + MIR3 SINE MIR 86 176 -32 6913 60 7 0 chrX 70955164 70956850 -106017290 + L1PA7 LINE L1 4455 6146 -8 503 274 26 65 chrX 70957284 70957514 -106016626 - MIR SINE MIR -30 232 12 22 0 0 0 chrX 70957702 70957724 -106016416 + AT_rich Low_complexity Low_complexity 1 22 0 441 297 225 6 chrX 70957808 70957990 -106016150 + MIR SINE MIR 41 262 0 2276 97 7 0 chrX 70958371 70958681 -106015459 + AluSx SINE Alu 1 312 0 549 230 24 12 chrX 70960856 70961021 -106013119 + L1ME LINE L1 5582 5748 -373 341 321 80 16 chrX 70961080 70961267 -106012873 - L1ME LINE L1 -301 5820 5622 301 318 40 8 chrX 70961291 70961417 -106012723 - L1ME LINE L1 -587 5534 5405 25 83 0 0 chrX 70961622 70961682 -106012458 + AT_rich Low_complexity Low_complexity 1 60 0 22 94 0 0 chrX 70961701 70961765 -106012375 + AT_rich Low_complexity Low_complexity 1 64 0 670 190 0 0 chrX 70961898 70962014 -106012126 + FLAM_C SINE Alu 1 116 -17 378 0 0 0 chrX 70962270 70962312 -106011828 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 36 0 0 0 chrX 70962445 70962481 -106011659 + AT_rich Low_complexity Low_complexity 1 36 0 261 333 29 0 chrX 70962488 70962593 -106011547 - MIR SINE MIR -99 163 56 2403 78 0 3 chrX 70965034 70965343 -106008797 + AluSq SINE Alu 1 308 -5 25 75 0 0 chrX 70967007 70967060 -106007080 + AT_rich Low_complexity Low_complexity 1 53 0 1107 172 0 0 chrX 70967420 70967600 -106006540 + AluJb SINE Alu 133 312 0 201 229 0 0 chrX 70967600 70967648 -106006492 + GA-rich Low_complexity Low_complexity 4 51 0 189 367 122 0 chrX 70968977 70969075 -106005065 + MIR SINE MIR 34 143 -65 1314 196 19 31 chrX 70969632 70969892 -106004248 + AluJo SINE Alu 34 290 -22 3320 219 62 15 chrX 70970111 70971027 -106003113 - L1ME1 LINE L1 -18 6082 5131 * 3530 258 56 37 chrX 70971014 70972375 -106001765 - L1ME1 LINE L1 -1628 4452 3066 292 271 52 31 chrX 70972377 70972473 -106001667 - L2 LINE L2 -9 3304 3207 4284 224 53 20 chrX 70972731 70973328 -106000812 - L1PA16 LINE L1 -1 6559 5983 2245 138 13 19 chrX 70973328 70973705 -106000435 - THE1C LTR MaLR 0 375 1 9219 121 54 39 chrX 70973705 70975262 -105998878 - THE1C-int LTR MaLR 0 1580 1 2226 139 19 16 chrX 70975262 70975636 -105998504 - THE1C LTR MaLR 0 375 1 4284 224 53 20 chrX 70975636 70976436 -105997704 - L1PA16 LINE L1 -577 5983 5210 1820 157 21 0 chrX 70976436 70976723 -105997417 - AluSx SINE Alu -19 293 1 4284 224 53 20 chrX 70976723 70978362 -105995778 - L1PA16 LINE L1 -1350 5210 1128 317 336 84 26 chrX 70978578 70978804 -105995336 - L1ME1 LINE L1 -5574 496 258 333 324 39 19 chrX 70979014 70979221 -105994919 - L1ME1 LINE L1 -5858 212 2 369 0 0 0 chrX 70979350 70979391 -105994749 + (CA)n Simple_repeat Simple_repeat 2 42 0 217 231 0 0 chrX 70980791 70980830 -105993310 + L2 LINE L2 3249 3287 -26 845 316 91 5 chrX 70980830 70981381 -105992759 - L1MEc LINE L1 -2510 3705 3108 4434 277 44 35 chrX 70981398 70981748 -105992392 - L1MEc LINE L1 -4426 1970 1625 568 0 0 0 chrX 70981748 70981813 -105992327 - L1PA4 LINE L1 -8 6147 6083 4434 277 44 35 chrX 70981813 70983310 -105990830 - L1MEc LINE L1 -4771 1625 102 189 0 0 0 chrX 70983310 70983331 -105990809 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4434 277 44 35 chrX 70983331 70983398 -105990742 - L1MEc LINE L1 -6294 102 37 331 295 21 54 chrX 70983413 70983627 -105990513 + MIR SINE MIR 7 211 -51 1484 96 10 0 chrX 70983937 70984136 -105990004 - AluSq SINE Alu -12 301 101 1721 83 4 4 chrX 70984791 70985033 -105989107 + L1MA2 LINE L1 6061 6302 -2 22 35 0 0 chrX 70985034 70985063 -105989077 + AT_rich Low_complexity Low_complexity 1 29 0 4649 119 16 27 chrX 70985729 70986495 -105987645 + L1MA8 LINE L1 5513 6269 -22 878 232 21 5 chrX 70986786 70986980 -105987160 + MLT1D LTR MaLR 294 490 -15 482 233 125 28 chrX 70987376 70987545 -105986595 - MER5A DNA MER1_type 0 189 4 1503 181 91 28 chrX 70987914 70988267 -105985873 + THE1C LTR MaLR 1 375 0 297 169 0 0 chrX 70988717 70988776 -105985364 + (TG)n Simple_repeat Simple_repeat 2 60 0 290 277 60 12 chrX 70988842 70988925 -105985215 + MIR SINE MIR 7 93 -169 396 0 0 0 chrX 70989847 70989891 -105984249 + (CA)n Simple_repeat Simple_repeat 1 44 0 209 362 0 14 chrX 70989892 70989961 -105984179 + MIR SINE MIR 33 100 -108 641 286 60 9 chrX 70989977 70990194 -105983946 + MIR SINE MIR 35 262 0 355 271 62 0 chrX 70990204 70990300 -105983840 + MIR3 SINE MIR 98 199 -9 243 0 0 0 chrX 70991471 70991498 -105982642 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 40 0 0 chrX 70991498 70991523 -105982617 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1096 312 146 9 chrX 70994595 70995180 -105978960 + L2 LINE L2 2651 3311 -2 1185 289 77 54 chrX 70995549 70996366 -105977774 + L2 LINE L2 2460 3313 0 1712 325 131 13 chrX 70996448 70997242 -105976898 + L3 LINE CR1 630 1517 -60 851 209 0 33 chrX 70997766 70997948 -105976192 - FRAM SINE Alu 0 40 1 783 242 39 0 chrX 70998484 70998666 -105975474 + MER5A DNA MER1_type 1 189 0 207 222 0 0 chrX 70998707 70998752 -105975388 - L2 LINE L2 -5 3308 3264 1961 139 0 19 chrX 71000093 71000403 -105973737 - AluSx SINE Alu -8 304 1 237 299 15 30 chrX 71000405 71000472 -105973668 - MIR SINE MIR -61 147 82 952 205 24 5 chrX 71002265 71002470 -105971670 - MER63A DNA MER1_type -1 209 1 4141 98 26 2 chrX 71003091 71003711 -105970429 + L1MA1 LINE L1 5661 6295 -7 25 23 0 23 chrX 71003711 71003727 -105970413 + AT_rich Low_complexity Low_complexity 1 16 -26 2946 130 13 39 chrX 71003727 71004272 -105969868 + L1MA4 LINE L1 5769 6299 -1 25 23 0 23 chrX 71004272 71004298 -105969842 + AT_rich Low_complexity Low_complexity 16 42 0 199 358 130 8 chrX 71004727 71004850 -105969290 - MIR SINE MIR -5 257 120 611 239 174 14 chrX 71005058 71005271 -105968869 - MIR SINE MIR -14 248 2 623 278 61 17 chrX 71005319 71005614 -105968526 + L1MC5 LINE L1 7609 7916 -45 8700 56 1 2 chrX 71005690 71006761 -105967379 - MER11C LTR ERVK -1 1070 1 427 174 35 83 chrX 71007013 71007157 -105966983 + L2 LINE L2 3103 3239 -74 5847 115 12 39 chrX 71007162 71007521 -105966619 - L1PB1 LINE L1 -1 6150 5783 258 105 0 0 chrX 71007521 71007559 -105966581 + (TA)n Simple_repeat Simple_repeat 2 39 0 5847 115 12 39 chrX 71007559 71008298 -105965842 - L1PB1 LINE L1 -368 5783 5082 382 0 0 0 chrX 71008321 71008363 -105965777 - L1P5 LINE L1 -591 5560 5519 * 6022 158 35 1 chrX 71008353 71009456 -105964684 - L1PBa LINE L1 -4406 2457 1317 4519 197 49 5 chrX 71009466 71010513 -105963627 - L1PBa LINE L1 -5706 1157 22 429 237 0 11 chrX 71010514 71010607 -105963533 + L2 LINE L2 3222 3313 0 581 181 71 8 chrX 71012584 71012711 -105961429 + L1MEd LINE L1 3 137 -5982 601 306 98 48 chrX 71013012 71014192 -105959948 + L1MEd LINE L1 500 1791 -4338 1216 138 9 56 chrX 71014192 71014423 -105959717 - L1MC1 LINE L1 0 6333 6114 601 306 98 48 chrX 71014423 71014964 -105959176 + L1MEd LINE L1 1791 2303 -3826 5297 143 61 17 chrX 71014981 71016080 -105958060 + L1MA8 LINE L1 4643 5830 -461 3993 87 7 116 chrX 71016080 71016820 -105957320 + MER4A LTR ERV1 5 663 -1 5297 143 61 17 chrX 71016820 71017297 -105956843 + L1MA8 LINE L1 5830 6285 -6 31 58 0 0 chrX 71017352 71017404 -105956736 + AT_rich Low_complexity Low_complexity 1 52 0 3764 134 49 0 chrX 71017517 71018166 -105955974 - Ricksha DNA DNA -71 3175 2495 1264 187 108 22 chrX 71018164 71018480 -105955660 - Ricksha DNA DNA -2835 411 69 * 337 296 8 8 chrX 71018489 71018614 -105955526 + L1MEd LINE L1 2378 2502 -3627 466 213 8 31 chrX 71019211 71019338 -105954802 - Ricksha DNA DNA -1107 147 24 1018 293 118 48 chrX 71019365 71020978 -105953162 + L1MEd LINE L1 3323 5084 -1045 4311 206 33 117 chrX 71021092 71022808 -105951332 + L1 LINE L1 3210 4781 -1365 6318 129 24 14 chrX 71022832 71023978 -105950162 - L1MA1 LINE L1 -6 6296 5138 895 186 0 0 chrX 71024576 71024716 -105949424 + FRAM SINE Alu 9 148 -28 1312 168 58 7 chrX 71025056 71025209 -105948931 + L1MA9 LINE L1 5994 6138 -174 219 69 0 0 chrX 71025209 71025238 -105948902 + (CA)n Simple_repeat Simple_repeat 2 30 0 1312 168 58 7 chrX 71025238 71025376 -105948764 + L1MA9 LINE L1 6138 6300 -12 452 344 8 0 chrX 71025506 71025637 -105948503 + L2 LINE L2 3141 3272 0 348 347 60 0 chrX 71025961 71026111 -105948029 + MIR3 SINE MIR 42 200 -8 23 33 0 0 chrX 71026311 71026341 -105947799 + AT_rich Low_complexity Low_complexity 1 30 0 3755 144 14 5 chrX 71026446 71027099 -105947041 + L1MA5 LINE L1 5642 6300 0 708 296 118 9 chrX 71027105 71027542 -105946598 - L1MC/D LINE L1 -303 5818 5317 508 269 172 44 chrX 71027554 71027944 -105946196 - L1MC/D LINE L1 -823 5323 4884 398 344 49 0 chrX 71028090 71028268 -105945872 - MIR SINE MIR -67 141 1 3837 32 9 0 chrX 71028757 71029221 -105944919 + L1PA5 LINE L1 5687 6154 0 2626 39 0 3 chrX 71029659 71029971 -105944169 - AluY SINE Alu 0 311 1 306 0 0 0 chrX 71031116 71031150 -105942990 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2036 147 16 13 chrX 71031267 71031641 -105942499 + THE1C LTR MaLR 1 375 0 7843 93 55 176 chrX 71031641 71033440 -105940700 + THE1C-int LTR MaLR 1 1580 0 1929 159 21 29 chrX 71033440 71033818 -105940322 + THE1C LTR MaLR 1 375 0 30 59 0 0 chrX 71034446 71034497 -105939643 + AT_rich Low_complexity Low_complexity 1 51 0 1375 91 0 0 chrX 71035292 71035478 -105938662 + L1PA7 LINE L1 5962 6147 -7 185 382 59 0 chrX 71036062 71036130 -105938010 + L2 LINE L2 3115 3186 -86 686 263 83 10 chrX 71036543 71036748 -105937392 - MIR SINE MIR -20 242 23 6327 156 13 5 chrX 71036983 71037657 -105936483 - L1MA1 LINE L1 0 7721 7054 2427 47 7 3 chrX 71037657 71037957 -105936183 + AluY SINE Alu 1 301 -10 6327 156 13 5 chrX 71037957 71039040 -105935100 - L1MA1 LINE L1 -667 7054 5950 1276 67 12 0 chrX 71039058 71039223 -105934917 - L1PA3 LINE L1 -3 6152 5986 5686 30 1 0 chrX 71039230 71039942 -105934198 + L1PA3 LINE L1 5279 5991 -164 3644 192 37 1 chrX 71039935 71040773 -105933367 - L1MA1 LINE L1 -1601 5964 5097 * 8504 209 34 60 chrX 71040773 71041048 -105933092 - L1MA1 LINE L1 -4252 3313 3032 1970 94 3 67 chrX 71041048 71041395 -105932745 - AluSc SINE Alu 0 328 1 8504 209 34 60 chrX 71041395 71041831 -105932309 - L1MA1 LINE L1 -4533 3032 2586 2177 126 27 21 chrX 71041831 71042204 -105931936 - THE1C LTR MaLR 0 375 1 8504 209 34 60 chrX 71042204 71042220 -105931920 - L1MA1 LINE L1 -4979 2586 2571 2364 95 0 0 chrX 71042220 71042516 -105931624 - AluSc SINE Alu -13 296 1 8504 209 34 60 chrX 71042516 71044805 -105929335 - L1MA1 LINE L1 -4994 2571 13 728 264 21 5 chrX 71044806 71044999 -105929141 - L2 LINE L2 -963 2351 2156 190 343 27 0 chrX 71046220 71046293 -105927847 - MIR SINE MIR -187 75 1 39752 64 2 2 chrX 71046568 71052714 -105921426 + L1PA5 LINE L1 13 6154 0 301 273 47 31 chrX 71052771 71052899 -105921241 - L1MC4 LINE L1 -966 7076 6947 216 111 0 0 chrX 71052941 71052977 -105921163 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1092 188 29 0 chrX 71052988 71053227 -105920913 + L1MB1 LINE L1 5912 6157 -11 237 224 0 0 chrX 71053934 71053983 -105920157 + L2 LINE L2 3261 3309 -4 186 410 17 0 chrX 71054151 71054268 -105919872 + L2 LINE L2 2945 3063 -209 256 245 115 94 chrX 71054401 71054550 -105919590 + MIR SINE MIR 88 247 -15 208 268 0 18 chrX 71054583 71054639 -105919501 + L2 LINE L2 3213 3267 -5 240 86 0 0 chrX 71055135 71055170 -105918970 + (CA)n Simple_repeat Simple_repeat 2 36 0 242 352 56 8 chrX 71055493 71055618 -105918522 - MIR SINE MIR -79 183 53 209 312 98 47 chrX 71055704 71055938 -105918202 + L2 LINE L2 2313 2558 -756 24 0 0 0 chrX 71056295 71056319 -105917821 + AT_rich Low_complexity Low_complexity 1 24 0 206 316 79 13 chrX 71056350 71056426 -105917714 - L2 LINE L2 -43 3229 3149 631 306 33 6 chrX 71056469 71056652 -105917488 + MER5A DNA MER1_type 1 188 -1 1938 134 45 6 chrX 71056816 71057175 -105916965 + L1MA5 LINE L1 5923 6295 -5 1612 158 10 30 chrX 71158354 71158652 -105815488 + AluJo SINE Alu 1 292 -20 413 336 14 7 chrX 71159237 71159383 -105814757 + MIR3 SINE MIR 19 165 -43 778 144 0 14 chrX 71159586 71159725 -105814415 - L1MA4 LINE L1 -1 6299 6163 2514 74 3 0 chrX 71160052 71160363 -105813777 + AluSp SINE Alu 1 312 -1 319 331 25 33 chrX 71161338 71161459 -105812681 - MIR SINE MIR -57 151 32 538 186 0 0 chrX 71161827 71161924 -105812216 - AluJ/FLAM SINE Alu -215 97 1 34 24 0 0 chrX 71162031 71162072 -105812068 + AT_rich Low_complexity Low_complexity 1 41 0 1008 173 37 28 chrX 71162534 71162748 -105811392 - MER20 DNA MER1_type -3 216 1 998 194 39 18 chrX 71163447 71163871 -105810269 + Charlie4a DNA MER1_type 24 492 -16 261 233 0 0 chrX 71164132 71164175 -105809965 - L2 LINE L2 -19 3253 3211 208 0 30 30 chrX 71164282 71164315 -105809825 + (TTAA)n Simple_repeat Simple_repeat 4 36 0 328 236 31 19 chrX 71164474 71164614 -105809526 + L1MC4 LINE L1 1996 6983 -1339 2524 179 5 35 chrX 71164652 71164684 -105809456 - L1PA13 LINE L1 -4640 2934 2903 2029 148 0 0 chrX 71164684 71164981 -105809159 - AluSx SINE Alu -15 297 1 2524 179 5 35 chrX 71164981 71165512 -105808628 - L1PA13 LINE L1 -4671 2903 2388 1312 166 5 5 chrX 71165510 71165721 -105808419 - L1PA13 LINE L1 -5996 1585 1375 * 4537 163 21 38 chrX 71165722 71166713 -105807427 + MER11C LTR ERVK 1 1067 -4 8452 223 7 23 chrX 71166716 71168200 -105805940 - L1PA12 LINE L1 -5873 1708 467 4645 122 27 69 chrX 71168200 71168480 -105805660 - LTR25 LTR ERV1 -1 793 503 1787 110 114 0 chrX 71168480 71168744 -105805396 + AluSc SINE Alu 1 294 -15 4645 122 27 69 chrX 71168744 71169291 -105804849 - LTR25 LTR ERV1 -291 503 1 8452 223 7 23 chrX 71169291 71169747 -105804393 - L1PA12 LINE L1 -7114 467 5 299 283 75 32 chrX 71169753 71169940 -105804200 + L1M4 LINE L1 3761 3955 -2191 495 287 98 11 chrX 71170975 71171149 -105802991 + MIR3 SINE MIR 14 202 -6 2014 98 29 4 chrX 71171587 71171913 -105802227 - AluSp SINE Alu 0 333 1 42 57 0 0 chrX 71171969 71172039 -105802101 + AT_rich Low_complexity Low_complexity 1 70 0 5995 91 6 4 chrX 71172105 71173341 -105800799 - L1PA8A LINE L1 -1 6130 4875 241 292 86 65 chrX 71173843 71174326 -105799814 + L1M4 LINE L1 4386 4882 -1264 11258 41 3 0 chrX 71174326 71176467 -105797673 - L1PA5 LINE L1 0 6154 4009 241 292 86 65 chrX 71176467 71176507 -105797633 + L1M4 LINE L1 4882 4920 -1226 878 144 72 7 chrX 71176564 71176717 -105797423 + THE1C LTR MaLR 1 163 -212 714 203 0 0 chrX 71176717 71176850 -105797290 - FLAM_C SINE Alu -10 133 1 554 325 39 82 chrX 71176860 71177324 -105796816 + L2 LINE L2 2618 3064 -208 321 253 0 13 chrX 71177552 71177631 -105796509 + MIR SINE MIR 174 251 -11 186 294 20 0 chrX 71178085 71178136 -105796004 - MIR SINE MIR -60 148 97 308 70 0 0 chrX 71178669 71178712 -105795428 + MADE1 DNA Mariner 1 43 -37 345 150 0 0 chrX 71179008 71179068 -105795072 - Charlie5 DNA MER1_type -27 2585 2526 201 248 33 16 chrX 71179803 71179924 -105794216 + (TTATA)n Simple_repeat Simple_repeat 5 127 0 686 193 58 41 chrX 71180876 71181047 -105793093 - LTR52 LTR ERVL -8 413 240 2037 150 0 0 chrX 71181051 71181357 -105792783 + AluJb SINE Alu 5 310 -2 362 200 75 0 chrX 71181407 71181487 -105792653 - LTR52 LTR ERVL -334 87 2 880 316 95 22 chrX 71182944 71183335 -105790805 - L2 LINE L2 -729 2585 2147 870 228 27 0 chrX 71183335 71183519 -105790621 - MER5A DNA MER1_type 0 189 1 880 316 95 22 chrX 71183519 71183631 -105790509 - L2 LINE L2 -1167 2147 2045 2388 76 0 3 chrX 71183989 71184293 -105789847 - AluSg SINE Alu -7 303 1 25 31 0 0 chrX 71185984 71186016 -105788124 + AT_rich Low_complexity Low_complexity 1 32 0 1553 295 66 12 chrX 71187933 71188510 -105785630 + L1MEc LINE L1 22 629 -5767 612 205 12 78 chrX 71188529 71188695 -105785445 - FRAM SINE Alu -24 152 1 896 208 49 4 chrX 71188696 71188961 -105785179 + L1MEc LINE L1 641 917 -5479 279 208 0 52 chrX 71188958 71189035 -105785105 + L1MEc LINE L1 2320 2392 -4004 * 7646 199 71 17 chrX 71189166 71190782 -105783358 + L1PA16 LINE L1 2748 4275 -1960 2030 137 0 3 chrX 71190782 71191109 -105783031 + AluSq SINE Alu 1 326 0 7646 199 71 17 chrX 71191109 71192796 -105781344 + L1PA16 LINE L1 4275 6234 -1 941 251 85 19 chrX 71192872 71193238 -105780902 + L1M4 LINE L1 3348 3737 -2409 * 16870 160 17 51 chrX 71193234 71193571 -105780569 - L1PA13 LINE L1 -2 7599 7252 1846 122 97 31 chrX 71193571 71193923 -105780217 - THE1C LTR MaLR 0 375 1 513 0 0 0 chrX 71193932 71193989 -105780151 + (TG)n Simple_repeat Simple_repeat 2 58 0 2055 121 3 0 chrX 71193992 71194274 -105779866 - AluSp SINE Alu -30 283 1 16870 160 17 51 chrX 71194274 71197061 -105777079 - L1PA13 LINE L1 -359 7242 4364 1616 116 163 0 chrX 71197061 71197319 -105776821 - AluSp SINE Alu -3 300 1 16870 160 17 51 chrX 71197319 71202079 -105772061 - L1PA13 LINE L1 -3237 4364 1 1380 186 15 12 chrX 71202074 71202412 -105771728 + L1M4 LINE L1 4966 5304 -842 * 2228 85 58 0 chrX 71202696 71202991 -105771149 + AluSx SINE Alu 1 312 0 2341 106 0 0 chrX 71203294 71203597 -105770543 + AluSx SINE Alu 1 303 -9 2347 94 0 0 chrX 71203786 71204084 -105770056 - AluSx SINE Alu -14 298 1 430 391 60 11 chrX 71204342 71204626 -105769514 - L2 LINE L2 -530 2784 2487 772 177 33 6 chrX 71204895 71205076 -105769064 + L1PB3 LINE L1 5182 5367 -779 932 129 65 0 chrX 71205077 71205232 -105768908 + AluSg/x SINE Alu 137 301 -11 4662 141 10 1 chrX 71205232 71206020 -105768120 + L1PB3 LINE L1 5359 6153 -1 23 54 0 0 chrX 71206707 71206744 -105767396 + AT_rich Low_complexity Low_complexity 1 37 0 2138 82 4 4 chrX 71208387 71208694 -105765446 - AluSg SINE Alu 0 307 1 1320 242 62 17 chrX 71209045 71209450 -105764690 - LTR40a LTR ERVL -2 517 95 32 26 0 0 chrX 71209612 71209651 -105764489 + AT_rich Low_complexity Low_complexity 1 39 0 1520 182 0 66 chrX 71210139 71210457 -105763683 + AluJb SINE Alu 1 297 -15 519 223 0 10 chrX 71210603 71210706 -105763434 + MER3 DNA MER1_type 1 102 -107 4970 123 14 17 chrX 71211918 71212699 -105761441 - MER4E LTR ERV1 0 779 1 1913 116 0 60 chrX 71212868 71213202 -105760938 + AluSg SINE Alu 1 316 0 10543 130 82 35 chrX 71213873 71214694 -105759446 - MER4E-int LTR ERV1 -111 6647 5865 2128 105 0 3 chrX 71214694 71214980 -105759160 + AluSq SINE Alu 20 304 -9 10543 130 82 35 chrX 71214980 71215348 -105758792 - MER4E-int LTR ERV1 -893 5865 5515 2200 91 3 0 chrX 71215348 71215635 -105758505 - AluY SINE Alu -23 288 1 10543 130 82 35 chrX 71215635 71216543 -105757597 - MER4E-int LTR ERV1 -1243 5515 4452 3767 149 35 8 chrX 71216542 71217192 -105756948 - MER4E-int LTR ERV1 -2670 4088 3421 * 1622 128 56 43 chrX 71217179 71217241 -105756899 - MER4E-int LTR ERV1 -3664 3094 3034 * 2278 103 13 7 chrX 71217241 71217543 -105756597 - AluSx SINE Alu -8 304 1 1622 128 56 43 chrX 71217543 71217854 -105756286 - MER4E-int LTR ERV1 -3724 3034 2716 1710 180 78 34 chrX 71217876 71218314 -105755826 + LTR2B LTR ERV1 34 490 0 51401 48 20 15 chrX 71218314 71219707 -105754433 + Harlequin LTR ERV1 1 1384 -5512 225 0 0 0 chrX 71219707 71219732 -105754408 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 51401 48 20 15 chrX 71219732 71225194 -105748946 + Harlequin LTR ERV1 1384 6896 0 11633 28 7 0 chrX 71225287 71227449 -105746691 + L1PA4 LINE L1 4008 6175 0 1615 176 92 18 chrX 71227449 71227829 -105746311 + LTR2B LTR ERV1 83 490 0 7037 193 72 67 chrX 71227829 71228078 -105746062 - MER4E-int LTR ERV1 -4040 2718 2472 2207 120 3 3 chrX 71228078 71228379 -105745761 + AluSx SINE Alu 1 301 -11 7037 193 72 67 chrX 71228379 71230831 -105743309 - MER4E-int LTR ERV1 -4286 2472 1 4107 119 52 5 chrX 71230831 71231486 -105742654 - MER4E LTR ERV1 0 779 94 2009 92 70 6 chrX 71231486 71231852 -105742288 - MER4E LTR ERV1 0 450 1 695 57 0 75 chrX 71231852 71231958 -105742182 - MER4E LTR ERV1 -681 98 1 3134 94 15 11 chrX 71231970 71232356 -105741784 - L1PA13 LINE L1 -3 6160 5770 4494 55 0 42 chrX 71232356 71232973 -105741167 + LTR10C LTR ERV1 1 591 0 3134 94 15 11 chrX 71232973 71233064 -105741076 - L1PA13 LINE L1 -393 5770 5681 2369 131 21 45 chrX 71233064 71233493 -105740647 + L1P4 LINE L1 4916 5331 -837 2215 122 6 0 chrX 71233493 71233804 -105740336 - AluSq SINE Alu 0 313 1 2369 131 21 45 chrX 71233804 71234141 -105739999 + L1P4 LINE L1 5331 5675 -493 457 270 14 0 chrX 71234282 71234421 -105739719 + MIR SINE MIR 50 192 -70 21 0 0 0 chrX 71236844 71236865 -105737275 + AT_rich Low_complexity Low_complexity 1 21 0 2075 184 29 7 chrX 71237023 71237154 -105736986 + L1MB7 LINE L1 5544 5671 -513 2615 131 11 7 chrX 71237154 71237588 -105736552 + L1PA15 LINE L1 5728 6163 -2 2075 184 29 7 chrX 71237588 71237895 -105736245 + L1MB7 LINE L1 5671 5982 -202 998 227 14 75 chrX 71237890 71238161 -105735979 - L1M4 LINE L1 -6178 364 78 * 184 29 29 29 chrX 71238161 71238195 -105735945 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2077 127 0 3 chrX 71238197 71238480 -105735660 - AluSx SINE Alu -30 282 1 998 227 14 75 chrX 71238480 71238553 -105735587 - L1M4 LINE L1 -6465 77 38 * 24837 131 9 15 chrX 71238550 71239505 -105734635 - L1PA8A LINE L1 0 6446 5487 207 0 0 0 chrX 71239505 71239528 -105734612 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24837 131 9 15 chrX 71239528 71242038 -105732102 - L1PA8A LINE L1 -959 5487 2963 2048 118 31 0 chrX 71242038 71242325 -105731815 - AluSg SINE Alu -14 296 1 24837 131 9 15 chrX 71242325 71245273 -105728867 - L1PA8A LINE L1 -3483 2963 8 629 169 24 0 chrX 71245331 71245455 -105728685 + L1MB7 LINE L1 6028 6154 -30 1835 185 11 23 chrX 71245487 71245973 -105728167 - MER74A LTR ERVL -17 541 1 2259 97 6 10 chrX 71246996 71247307 -105726833 - AluY SINE Alu 0 311 2 4575 119 107 20 chrX 71247891 71249222 -105724918 + pTR5 LTR ERV1 741 2606 0 26 50 0 0 chrX 71251105 71251145 -105722995 + AT_rich Low_complexity Low_complexity 1 40 0 2479 78 0 0 chrX 71251644 71251952 -105722188 - AluSg SINE Alu -2 308 1 2145 92 3 3 chrX 71252331 71252655 -105721485 + AluSp SINE Alu 29 352 0 24 53 0 0 chrX 71254381 71254419 -105719721 + AT_rich Low_complexity Low_complexity 1 38 0 554 134 0 21 chrX 71255328 71255425 -105718715 + L1PA11 LINE L1 6077 6171 -3 2203 110 3 3 chrX 71255826 71256125 -105718015 + AluSc SINE Alu 1 299 -10 194 0 39 0 chrX 71256893 71256919 -105717221 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1766 132 33 50 chrX 71257555 71257858 -105716282 + AluJo SINE Alu 1 298 -14 5739 62 10 1 chrX 71258941 71259719 -105714421 - L1PA8 LINE L1 0 6172 5388 546 62 62 0 chrX 71259715 71259796 -105714344 + L1P LINE L1 5288 5373 -781 * 2153 141 18 6 chrX 71259924 71260264 -105713876 + MER2 DNA MER2_type 1 344 0 2225 112 0 0 chrX 71260908 71261202 -105712938 + AluSx SINE Alu 1 294 -18 310 326 23 30 chrX 71261333 71261465 -105712675 - L2 LINE L2 -5 3267 3137 247 364 34 8 chrX 71261807 71261925 -105712215 + MER5B DNA MER1_type 9 129 -49 1374 218 109 51 chrX 71261982 71262468 -105711672 - L1MC4 LINE L1 -139 7903 7390 1244 218 38 19 chrX 71262469 71262841 -105711299 - L1MC4 LINE L1 -935 7107 6729 414 239 18 0 chrX 71262856 71262965 -105711175 - L1MC4 LINE L1 -1470 6572 6462 283 109 0 62 chrX 71263207 71263271 -105710869 + (GGGAA)n Simple_repeat Simple_repeat 4 63 0 365 297 8 8 chrX 71263277 71263405 -105710735 - LTR16B LTR ERVL -1 463 336 759 146 76 81 chrX 71263837 71264022 -105710118 + L1PA15-16 LINE L1 16 199 -7366 577 364 12 0 chrX 71264030 71264376 -105709764 + L1PA15-16 LINE L1 766 1115 -6450 2670 272 45 25 chrX 71264891 71265042 -105709098 + L1PA15-16 LINE L1 1806 1952 -5614 2530 86 43 0 chrX 71265042 71265416 -105708724 + L1PA5 LINE L1 5763 6152 -2 2670 272 45 25 chrX 71265416 71266647 -105707493 + L1PA15-16 LINE L1 1952 3193 -4373 11820 29 5 0 chrX 71266669 71268148 -105705992 + L1P LINE L1 3387 4872 -1274 3197 226 42 27 chrX 71268148 71268661 -105705479 + L1M2 LINE L1 2507 3010 -3838 2123 122 0 30 chrX 71268661 71268965 -105705175 + AluSx SINE Alu 3 297 -15 3197 226 42 27 chrX 71268965 71269834 -105704306 + L1M2 LINE L1 3010 3912 -2936 6903 65 3 4 chrX 71269835 71270789 -105703351 + L1PA7 LINE L1 5197 6154 0 407 180 0 0 chrX 71270878 71270939 -105703201 + AluS SINE Alu 1 61 -250 2130 138 23 0 chrX 71270946 71271295 -105702845 + L1PB4 LINE L1 5799 6155 -1 242 360 12 35 chrX 71271354 71271526 -105702614 - L2 LINE L2 -2184 1130 963 257 213 16 0 chrX 71271530 71271591 -105702549 + MLT1F LTR MaLR 3 64 -503 1303 211 74 0 chrX 71271607 71271906 -105702234 + MLT1F LTR MaLR 222 542 0 297 385 6 12 chrX 71271957 71272118 -105702022 - L2 LINE L2 -2418 896 737 390 343 69 6 chrX 71272254 71272429 -105701711 + MER5A DNA MER1_type 4 189 0 469 314 162 17 chrX 71272681 71272971 -105701169 + L2 LINE L2 2921 3252 -61 5956 102 82 2 chrX 71273294 71274519 -105699621 - L1PA13 LINE L1 -5 6158 4893 3473 119 4 17 chrX 71274519 71275048 -105699092 + L1PA15 LINE L1 5632 6155 -10 183 42 0 0 chrX 71275061 71275085 -105699055 + (CAA)n Simple_repeat Simple_repeat 1 24 0 485 231 52 86 chrX 71275368 71275693 -105698447 + MER97c DNA MER1_type? 769 1082 -8 255 196 0 0 chrX 71275699 71275750 -105698390 + L2 LINE L2 3263 3313 0 630 254 281 16 chrX 71275867 71276214 -105697926 + L2 LINE L2 2660 2914 -399 2320 50 3 20 chrX 71276214 71276550 -105697590 - AluY SINE Alu 0 311 1 630 254 281 16 chrX 71276550 71276674 -105697466 + L2 LINE L2 2914 3312 -1 187 316 13 25 chrX 71277722 71277801 -105696339 - L2 LINE L2 -10 3262 3185 187 364 92 46 chrX 71277844 71278171 -105695969 + L2 LINE L2 2596 2937 -377 189 0 0 0 chrX 71278304 71278325 -105695815 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2064 73 0 56 chrX 71278328 71278630 -105695510 - AluSg SINE Alu -25 285 1 327 289 170 6 chrX 71278695 71278854 -105695286 + L2 LINE L2 3128 3312 -1 630 245 98 6 chrX 71279153 71279316 -105694824 - MIR SINE MIR -12 250 73 614 247 94 61 chrX 71279400 71279627 -105694513 - MIR SINE MIR -6 256 18 22 0 0 0 chrX 71279721 71279743 -105694397 + AT_rich Low_complexity Low_complexity 1 22 0 841 276 26 4 chrX 71279848 71280076 -105694064 - MIR SINE MIR -15 247 15 402 253 0 11 chrX 71281000 71281095 -105693045 - MIR SINE MIR -13 249 156 1609 190 41 40 chrX 71281288 71281707 -105692433 - L1MA9 LINE L1 0 6312 5795 351 0 0 0 chrX 71281707 71281746 -105692394 + (TG)n Simple_repeat Simple_repeat 2 40 0 1609 190 41 40 chrX 71281746 71281904 -105692236 - L1MA9 LINE L1 -517 5795 5639 * 4343 162 40 10 chrX 71281902 71282789 -105691351 - L1MA9 LINE L1 -1460 4686 3774 2841 104 24 32 chrX 71282809 71283270 -105690870 - L1PA14 LINE L1 0 6161 5705 1379 179 19 0 chrX 71283271 71283534 -105690606 - L1MC/D LINE L1 -762 5582 5315 12456 191 34 13 chrX 71283536 71288714 -105685426 - L1PB1 LINE L1 -7 6860 1790 2147 96 3 0 chrX 71288714 71289039 -105685101 - AluSq SINE Alu 0 326 1 12456 191 34 13 chrX 71289039 71289372 -105684768 - L1PB1 LINE L1 -5077 1790 1465 458 84 84 0 chrX 71289372 71289443 -105684697 - MADE1 DNA Mariner -3 77 1 12456 191 34 13 chrX 71289443 71291230 -105682910 - L1PB1 LINE L1 -5402 1465 1 408 143 0 0 chrX 71291239 71291309 -105682831 - L1 LINE L1 -2358 4809 4740 2083 178 71 10 chrX 71291309 71291703 -105682437 - MSTB LTR MaLR 0 426 9 1626 198 36 5 chrX 71291726 71292141 -105681999 - L1 LINE L1 -4679 2419 1992 527 310 80 93 chrX 71292152 71292351 -105681789 - L1 LINE L1 -5417 1751 1551 1429 264 3 11 chrX 71292351 71292719 -105681421 + MLT1A1 LTR MaLR 1 365 0 527 310 80 93 chrX 71292719 71293219 -105680921 - L1 LINE L1 -5617 1551 1061 4445 213 89 91 chrX 71293329 71294826 -105679314 + L1 LINE L1 3 1496 -5534 * 5882 159 25 18 chrX 71294820 71295978 -105678162 + L1 LINE L1 4000 5165 -1941 1212 161 29 11 chrX 71295979 71296315 -105677825 + MSTB1 LTR MaLR 1 431 -1 2631 182 53 2 chrX 71296315 71296919 -105677221 + L1 LINE L1 5163 5797 -1309 821 230 18 46 chrX 71296975 71297231 -105676909 - L1M4 LINE L1 -5389 1466 1197 723 264 57 49 chrX 71297463 71297728 -105676412 - L1M4 LINE L1 -5644 1215 949 1994 177 62 38 chrX 71298125 71298543 -105675597 - MSTA LTR MaLR 0 428 1 8136 180 42 24 chrX 71298543 71300165 -105673975 - MSTA-int LTR MaLR 0 1651 1 1825 168 80 46 chrX 71300165 71300577 -105673563 - MSTA LTR MaLR 0 428 3 442 217 12 96 chrX 71300580 71300746 -105673394 - L1M4b LINE L1 -5493 1366 1215 544 108 54 18 chrX 71300783 71300894 -105673246 - L1MDa LINE L1 -3922 2618 2504 435 277 113 17 chrX 71300895 71301072 -105673068 - L1M4b LINE L1 -6653 206 13 764 161 27 7 chrX 71301081 71301230 -105672910 - L1MC/D LINE L1 -504 5738 5587 1131 224 83 6 chrX 71301254 71301533 -105672607 - MLT1D LTR MaLR -2 503 217 5627 109 13 4 chrX 71301573 71302416 -105671724 - L1MA1 LINE L1 -7 6295 5445 360 357 25 30 chrX 71302421 71302620 -105671520 + MIR SINE MIR 59 256 -6 5390 113 35 10 chrX 71302816 71303705 -105670435 + L1PB2 LINE L1 5262 6171 0 2119 167 3 3 chrX 71303712 71304083 -105670057 + L1PB3 LINE L1 5778 6148 -6 26 0 0 0 chrX 71304095 71304121 -105670019 + AT_rich Low_complexity Low_complexity 1 26 0 293 206 32 16 chrX 71304770 71304833 -105669307 - L2 LINE L2 -4 3309 3246 237 328 69 8 chrX 71304822 71304953 -105669187 - L2 LINE L2 -287 2985 2847 * 2414 71 3 0 chrX 71305404 71305701 -105668439 + AluSp SINE Alu 1 298 -15 205 279 0 0 chrX 71306403 71306446 -105667694 + MIR SINE MIR 215 257 -5 507 261 87 11 chrX 71306613 71306797 -105667343 + MLT1L LTR MaLR 417 614 -1 236 275 150 12 chrX 71306797 71306877 -105667263 + MIR SINE MIR 159 249 -13 23 33 0 0 chrX 71307331 71307361 -105666779 + AT_rich Low_complexity Low_complexity 1 30 0 6113 175 17 14 chrX 71307631 71309865 -105664275 - L1PA16 LINE L1 0 7604 5364 2952 113 10 33 chrX 71309878 71310365 -105663775 - L1PB2 LINE L1 -3 6148 5673 2463 188 16 16 chrX 71310365 71310390 -105663750 + L1 LINE L1 4706 4730 -1416 1917 144 72 26 chrX 71310390 71310738 -105663402 + THE1B LTR MaLR 1 364 0 2463 188 16 16 chrX 71310738 71311259 -105662881 + L1 LINE L1 4729 5252 -894 * 8113 257 30 30 chrX 71311258 71314227 -105659913 - L1PA16 LINE L1 -2206 5378 2410 1747 284 41 74 chrX 71314273 71315208 -105658932 - L1PA16 LINE L1 -6677 904 1 4104 188 30 3 chrX 71315229 71316093 -105658047 + L1 LINE L1 3088 3974 -2172 458 275 0 0 chrX 71316095 71316204 -105657936 - MER82 DNA MER2_type -543 110 2 404 233 215 37 chrX 71316589 71316752 -105657388 - MER58C DNA MER1_type -15 200 9 689 158 207 18 chrX 71317192 71317356 -105656784 + MER3 DNA MER1_type 14 208 -1 222 219 0 0 chrX 71317419 71317460 -105656680 + (TATATG)n Simple_repeat Simple_repeat 5 45 0 2281 96 3 0 chrX 71317460 71317752 -105656388 - AluSq SINE Alu -20 293 1 763 245 49 10 chrX 71319085 71319289 -105654851 + L2 LINE L2 3102 3313 0 1509 273 60 99 chrX 71320064 71320962 -105653178 - L3 LINE CR1 -14 1563 701 239 333 69 0 chrX 71320984 71321056 -105653084 + MIR SINE MIR 18 94 -168 557 249 70 35 chrX 71321057 71321314 -105652826 - L1ME LINE L1 -297 5824 5559 206 228 25 89 chrX 71321317 71321396 -105652744 - L2 LINE L2 0 3272 3199 21 36 0 0 chrX 71321571 71321599 -105652541 + AT_rich Low_complexity Low_complexity 1 28 0 1798 149 7 11 chrX 71322678 71322984 -105651156 + AluJb SINE Alu 6 310 0 825 182 43 0 chrX 71323452 71323639 -105650501 - L1MA8 LINE L1 -22 6269 6075 28 0 0 0 chrX 71323778 71323806 -105650334 + AT_rich Low_complexity Low_complexity 1 28 0 335 307 27 13 chrX 71324095 71324245 -105649895 - L1ME3A LINE L1 -284 5886 5735 2445 243 15 7 chrX 71324727 71325274 -105648866 - MLT1H1 LTR MaLR 0 555 5 209 136 45 0 chrX 71327699 71327743 -105646397 + (ATTG)n Simple_repeat Simple_repeat 3 48 0 596 271 93 27 chrX 71327751 71327976 -105646164 - MIR SINE MIR 0 262 23 415 164 0 0 chrX 71329285 71329358 -105644782 + L1M4 LINE L1 5386 5458 -720 2424 75 3 0 chrX 71329633 71329925 -105644215 + AluSp SINE Alu 1 293 -20 294 311 0 8 chrX 71329931 71329954 -105644186 - L1MA10 LINE L1 -40 6294 6272 1684 211 88 12 chrX 71329954 71330361 -105643779 - L1ME1 LINE L1 -53 6113 5676 290 65 65 0 chrX 71330635 71330697 -105643443 + (TA)n Simple_repeat Simple_repeat 2 67 0 238 216 0 65 chrX 71330721 71330874 -105643266 + (TA)n Simple_repeat Simple_repeat 1 143 0 283 279 0 0 chrX 71331149 71331217 -105642923 - MER112 DNA MER1_type 0 260 193 14622 124 10 18 chrX 71331234 71332051 -105642089 - L1PA10 LINE L1 -1 6167 5345 20772 32 1 1 chrX 71332051 71335333 -105638807 - L1PA4 LINE L1 -3 6152 2870 14622 124 10 18 chrX 71335333 71338775 -105635365 - L1PA10 LINE L1 -823 5345 1907 384 22 0 0 chrX 71340799 71340844 -105633296 + (CA)n Simple_repeat Simple_repeat 2 46 0 264 301 8 113 chrX 71341363 71341496 -105632644 - MIR3 SINE MIR -6 202 84 2429 90 0 0 chrX 71341565 71341877 -105632263 - AluSx SINE Alu 0 312 1 487 246 142 46 chrX 71341918 71342264 -105631876 - HAL1b LINE L1 -2 1346 968 1542 124 0 0 chrX 71342584 71342809 -105631331 + AluSg/x SINE Alu 86 310 -2 26 30 0 0 chrX 71343309 71343342 -105630798 + AT_rich Low_complexity Low_complexity 1 33 0 673 126 42 0 chrX 71343742 71343976 -105630164 - L1MA9 LINE L1 -22 6290 5951 * 1591 149 17 33 chrX 71343975 71344276 -105629864 + L1MA9 LINE L1 5636 5931 -381 192 352 0 23 chrX 71344421 71344509 -105629631 - L2 LINE L2 -3 3310 3225 654 294 72 53 chrX 71344601 71344984 -105629156 + L1ME4a LINE L1 4888 5262 -859 2377 66 0 47 chrX 71344984 71345304 -105628836 + AluY SINE Alu 1 305 -6 654 294 72 53 chrX 71345304 71345798 -105628342 + L1ME4a LINE L1 5262 5772 -349 249 305 11 52 chrX 71345809 71345983 -105628157 + L1ME4a LINE L1 5754 5920 -201 22 0 0 0 chrX 71346017 71346039 -105628101 + AT_rich Low_complexity Low_complexity 1 22 0 368 204 0 11 chrX 71346819 71346912 -105627228 + L1MA9 LINE L1 6221 6312 0 21 57 0 0 chrX 71347104 71347139 -105627001 + AT_rich Low_complexity Low_complexity 1 35 0 511 290 75 63 chrX 71348342 71348597 -105625543 - MIR SINE MIR 0 262 5 1726 189 18 37 chrX 71349039 71349420 -105624720 - MLT1A2 LTR MaLR 0 374 1 784 261 56 5 chrX 71349524 71349739 -105624401 + MIR SINE MIR 12 237 -25 21 36 0 0 chrX 71349751 71349779 -105624361 + AT_rich Low_complexity Low_complexity 1 28 0 347 238 71 0 chrX 71350170 71350254 -105623886 + L1MC4 LINE L1 6614 6703 -1339 338 267 47 0 chrX 71350194 71350280 -105623860 - L1MC4 LINE L1 -1339 6703 6614 * 34659 64 6 8 chrX 71350283 71355692 -105618448 - L1PA6 LINE L1 -5 6149 752 1270 192 33 0 chrX 71355700 71355972 -105618168 + MER58B DNA MER1_type 47 340 -1 738 263 61 63 chrX 71356216 71356768 -105617372 + L1MCc LINE L1 1168 2191 -4681 2293 103 0 0 chrX 71357306 71357606 -105616534 - AluY SINE Alu -11 300 1 288 319 12 80 chrX 71357650 71357813 -105616327 + MER5B DNA MER1_type 2 153 -25 1286 159 49 37 chrX 71358215 71358581 -105615559 - Charlie4a DNA MER1_type -61 447 7 21 0 0 0 chrX 71358818 71358839 -105615301 + AT_rich Low_complexity Low_complexity 1 21 0 640 226 77 46 chrX 71359069 71359264 -105614876 + MIR SINE MIR 38 238 -24 * 1881 275 207 20 chrX 71359263 71359876 -105614264 + L2 LINE L2 1884 2381 -932 2589 37 0 0 chrX 71359876 71360170 -105613970 - AluY SINE Alu -17 294 1 1881 275 207 20 chrX 71360170 71360714 -105613426 + L2 LINE L2 2381 3263 -50 249 182 0 0 chrX 71361161 71361216 -105612924 + (TA)n Simple_repeat Simple_repeat 1 55 0 302 280 0 30 chrX 71361217 71361317 -105612823 + L1MC4 LINE L1 6607 6703 -1339 300 312 0 11 chrX 71361304 71361397 -105612743 + L1MC4 LINE L1 6610 6701 -1341 * 261 0 0 0 chrX 71361488 71361517 -105612623 + (T)n Simple_repeat Simple_repeat 1 29 0 215 336 212 7 chrX 71361656 71361939 -105612201 + L2 LINE L2 1243 1583 -1731 1882 133 18 3 chrX 71362288 71362574 -105611566 - AluJb SINE Alu -22 290 1 275 375 0 0 chrX 71362973 71363061 -105611079 + L2 LINE L2 2569 2656 -658 623 296 26 79 chrX 71363067 71363486 -105610654 - MLT1J LTR MaLR -4 507 111 279 333 75 74 chrX 71363656 71363993 -105610147 + L2 LINE L2 2738 3078 -194 527 105 13 0 chrX 71363996 71364072 -105610068 - FLAM_A SINE Alu -22 120 44 2148 117 3 32 chrX 71364129 71364445 -105609695 + AluSq SINE Alu 1 307 -6 599 155 0 0 chrX 71365114 71365211 -105608929 + FLAM_A SINE Alu 40 136 -6 11022 170 15 6 chrX 71366172 71369039 -105605101 - L1PA13 LINE L1 -7 6807 3926 2262 130 3 21 chrX 71369059 71369436 -105604704 - L1PB1 LINE L1 -5 6146 5777 402 21 0 0 chrX 71369479 71369526 -105604614 + (CA)n Simple_repeat Simple_repeat 2 48 0 3719 163 8 6 chrX 71369536 71370696 -105603444 - L1PB1 LINE L1 -360 5791 4630 8127 160 50 6 chrX 71370699 71371438 -105602702 + L1PBa LINE L1 1562 2267 -4595 2322 97 3 0 chrX 71371438 71371738 -105602402 + AluSp SINE Alu 1 301 -12 8127 160 50 6 chrX 71371738 71373250 -105600890 + L1PBa LINE L1 2267 4269 -2593 300 27 0 0 chrX 71373250 71373287 -105600853 + (CAA)n Simple_repeat Simple_repeat 1 37 0 8127 160 50 6 chrX 71373287 71374102 -105600038 + L1PBa LINE L1 4269 5047 -1815 7808 193 26 8 chrX 71374103 71376773 -105597367 - L1PA13 LINE L1 -2957 3840 1110 1644 146 0 38 chrX 71376873 71377134 -105597006 - MER1B DNA MER1_type 0 339 129 504 0 0 0 chrX 71379592 71379648 -105594492 + (TA)n Simple_repeat Simple_repeat 1 56 0 423 332 42 10 chrX 71380569 71380762 -105593378 - MIR SINE MIR -57 205 7 222 338 84 52 chrX 71380973 71381127 -105593013 - MIR SINE MIR -56 206 48 24 0 0 0 chrX 71381273 71381297 -105592843 + AT_rich Low_complexity Low_complexity 1 24 0 518 222 257 12 chrX 71381804 71381975 -105592165 + MIR SINE MIR 38 250 -12 265 265 0 69 chrX 71381990 71382092 -105592048 - MIR SINE MIR -78 184 90 30 0 0 0 chrX 71383452 71383482 -105590658 + AT_rich Low_complexity Low_complexity 1 30 0 26799 37 2 1 chrX 71383482 71389624 -105584516 - L1PA3 LINE L1 -1 6154 9 1684 130 38 63 chrX 71389833 71389971 -105584169 - MER44D DNA MER2_type -1882 609 469 1356 121 9 0 chrX 71389971 71390186 -105583954 - L1MA3 LINE L1 0 6305 6089 1684 130 38 63 chrX 71390186 71390264 -105583876 - MER44D DNA MER2_type -2022 469 391 2327 76 0 7 chrX 71390264 71390565 -105583575 + AluY SINE Alu 1 299 -12 1684 130 38 63 chrX 71390565 71390694 -105583446 - MER44D DNA MER2_type -2100 391 2 365 316 71 13 chrX 71391025 71391180 -105582960 - L2 LINE L2 -1 3312 3149 466 250 23 8 chrX 71391209 71391341 -105582799 - MER94 DNA DNA 0 134 1 1457 190 3 35 chrX 71391393 71391715 -105582425 - AluJb SINE Alu 0 315 3 217 200 50 67 chrX 71393495 71393615 -105580525 + GA-rich Low_complexity Low_complexity 4 121 0 2558 57 0 0 chrX 71394047 71394347 -105579793 - AluY SINE Alu -11 300 1 547 76 13 0 chrX 71394419 71394498 -105579642 + MADE1 DNA Mariner 1 80 0 220 246 62 15 chrX 71394833 71394898 -105579242 - L3 LINE CR1 -179 1398 1331 1271 209 90 41 chrX 71395202 71395615 -105578525 + MLT1L LTR MaLR 73 608 -7 877 191 106 16 chrX 71395986 71396174 -105577966 + MIR SINE MIR 58 262 0 228 103 0 0 chrX 71396348 71396387 -105577753 - MADE1 DNA Mariner 0 80 42 678 204 91 11 chrX 71396435 71396611 -105577529 + L1ME3A LINE L1 5973 6162 -8 453 247 220 27 chrX 71396931 71397081 -105577059 + MIR SINE MIR 16 194 -68 180 268 14 14 chrX 71397079 71397150 -105576990 - MIR SINE MIR -57 205 135 * 198 286 63 0 chrX 71397175 71397238 -105576902 + MIR SINE MIR 196 262 0 206 178 22 0 chrX 71397460 71397505 -105576635 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1012 228 109 16 chrX 71397505 71397816 -105576324 + L2 LINE L2 1551 1890 -1424 400 230 20 0 chrX 71397847 71397947 -105576193 + L1MCb LINE L1 179 280 -5765 3412 154 75 1 chrX 71398005 71398896 -105575244 + L1MCb LINE L1 659 1629 -4849 580 259 38 5 chrX 71398897 71399082 -105575058 - L2 LINE L2 -655 2659 2469 319 356 14 54 chrX 71399188 71399483 -105574657 + L2 LINE L2 1397 1679 -1635 899 352 69 36 chrX 71399745 71400546 -105573594 + L2 LINE L2 1812 2638 -676 1725 158 3 31 chrX 71400582 71400873 -105573267 + AluJb SINE Alu 1 283 -29 27 49 0 0 chrX 71400927 71400968 -105573172 + AT_rich Low_complexity Low_complexity 1 41 0 2711 86 24 0 chrX 71401114 71401488 -105572652 - L1PA11 LINE L1 0 6174 5792 609 376 57 41 chrX 71401488 71402063 -105572077 + L2 LINE L2 2691 3269 -3 412 114 0 25 chrX 71402237 71402316 -105571824 + (CA)n Simple_repeat Simple_repeat 2 78 0 36885 81 7 6 chrX 71402678 71408808 -105565332 + L1PA6 LINE L1 11 6146 -8 234 380 19 19 chrX 71408948 71409056 -105565084 - MIR SINE MIR -64 144 37 290 282 68 132 chrX 71409076 71409342 -105564798 - MIR SINE MIR 0 262 14 631 244 161 16 chrX 71409920 71410113 -105564027 + MIR SINE MIR 9 229 -33 245 260 13 26 chrX 71410175 71410252 -105563888 - L2 LINE L2 -646 2668 2593 29 0 0 0 chrX 71410703 71410732 -105563408 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chrX 71410914 71410942 -105563198 + (CA)n Simple_repeat Simple_repeat 2 29 0 182 267 44 0 chrX 71411220 71411265 -105562875 + L2 LINE L2 3186 3232 -40 2571 182 16 85 chrX 71411277 71411886 -105562254 + MER70B LTR ERVL 12 578 0 855 269 71 13 chrX 71411938 71412176 -105561964 - MIR SINE MIR -6 256 5 34 55 0 0 chrX 71412412 71412467 -105561673 + AT_rich Low_complexity Low_complexity 1 55 0 5529 138 5 13 chrX 71412797 71413815 -105560325 + L1PA15 LINE L1 5155 6165 0 379 275 108 17 chrX 71413885 71414005 -105560135 - L2 LINE L2 -47 3225 3095 347 270 131 29 chrX 71414010 71414147 -105559993 - MER5A DNA MER1_type -2 187 37 212 301 52 78 chrX 71414223 71414416 -105559724 - L2 LINE L2 -214 3058 2871 1596 132 27 7 chrX 71414448 71414743 -105559397 - L1MA7 LINE L1 -2 6289 5989 183 80 0 60 chrX 71414977 71415027 -105559113 + (TA)n Simple_repeat Simple_repeat 1 47 0 523 118 0 18 chrX 71415054 71415164 -105558976 + (TA)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chrX 71415207 71415229 -105558911 + AT_rich Low_complexity Low_complexity 1 22 0 406 231 41 50 chrX 71415283 71415404 -105558736 - MIR SINE MIR -78 184 65 243 250 23 11 chrX 71416901 71416989 -105557151 + L1ME4a LINE L1 5688 5776 -345 241 309 11 32 chrX 71417016 71417110 -105557030 + MIR SINE MIR 6 97 -165 373 263 97 0 chrX 71417277 71417391 -105556749 + MIR SINE MIR 105 229 -33 254 250 36 0 chrX 71417406 71417462 -105556678 + L2 LINE L2 3250 3307 -6 1051 111 44 0 chrX 71417565 71417746 -105556394 - L1MA8 LINE L1 -7 6284 6096 269 261 112 0 chrX 71417763 71417897 -105556243 + L1ME4a LINE L1 5910 6058 -63 200 237 0 0 chrX 71418860 71418898 -105555242 + polypyrimidine Low_complexity Low_complexity 4 41 0 3584 149 10 5 chrX 71419076 71419672 -105554468 - MER50 LTR ERV1 -23 711 113 2325 164 40 7 chrX 71419680 71420244 -105553896 + MER50 LTR ERV1 1 658 -76 376 259 71 0 chrX 71420316 71420401 -105553739 + MER50-int LTR ERV1 1 91 -7114 * 6626 123 2 4 chrX 71420380 71421561 -105552579 + MER50-int LTR ERV1 34 1291 -5914 * 10815 91 30 1 chrX 71421560 71423109 -105551031 + MER50-int LTR ERV1 4531 6124 -1081 2346 108 12 30 chrX 71423118 71423534 -105550606 + MER50-int LTR ERV1 4918 7197 -8 3959 144 20 26 chrX 71423534 71424103 -105550037 + MER50 LTR ERV1 1 565 -169 2163 117 0 3 chrX 71424103 71424393 -105549747 - AluSx SINE Alu -23 289 1 3959 144 20 26 chrX 71424393 71424539 -105549601 + MER50 LTR ERV1 565 711 -23 762 232 68 32 chrX 71425412 71425632 -105548508 + MIR SINE MIR 35 262 0 441 246 123 22 chrX 71425826 71426005 -105548135 + MIR SINE MIR 47 243 -19 24 0 0 0 chrX 71426020 71426044 -105548096 + AT_rich Low_complexity Low_complexity 1 24 0 340 291 209 5 chrX 71426220 71426426 -105547714 + MIR SINE MIR 11 258 -4 2260 97 0 3 chrX 71426446 71426734 -105547406 - AluSq SINE Alu -25 288 2 564 276 56 50 chrX 71429177 71429397 -105544743 + MIR SINE MIR 30 249 -13 185 216 0 0 chrX 71431107 71431144 -105542996 - L2 LINE L2 -94 3219 3183 239 263 138 12 chrX 71431201 71431281 -105542859 + L2 LINE L2 2731 2820 -494 234 232 98 24 chrX 71431419 71431501 -105542639 + L1 LINE L1 4740 4827 -1319 1802 146 60 33 chrX 71431516 71431851 -105542289 - MER2 DNA MER2_type 0 344 1 1231 142 40 13 chrX 71433498 71433723 -105540417 + MER46A DNA MER2_type 6 236 0 6498 205 67 33 chrX 71434011 71434146 -105539994 - L1MB4 LINE L1 -36 6380 6251 1909 39 0 0 chrX 71434146 71434376 -105539764 + L1PA4 LINE L1 5922 6152 -3 6498 205 67 33 chrX 71434376 71436232 -105537908 - L1MB4 LINE L1 -165 6251 4460 225 54 54 0 chrX 71436232 71436269 -105537871 + T-rich Low_complexity Low_complexity 1 180 0 1941 119 45 0 chrX 71436269 71436538 -105537602 - AluSx SINE Alu -31 281 1 6498 205 67 33 chrX 71436538 71438820 -105535320 - L1MB4 LINE L1 -1956 4460 2258 2011 132 17 14 chrX 71438820 71439115 -105535025 + AluSq SINE Alu 1 296 -17 6498 205 67 33 chrX 71439115 71439177 -105534963 - L1MB4 LINE L1 -4158 2258 2200 1232 211 26 4 chrX 71439177 71439409 -105534731 + MER8 DNA MER2_type 3 239 0 6498 205 67 33 chrX 71439409 71440608 -105533532 - L1MB4 LINE L1 -4216 2200 608 2866 3 0 0 chrX 71440608 71440917 -105533223 - AluYa5 SINE Alu -2 309 1 6498 205 67 33 chrX 71440917 71440977 -105533163 - L1MB4 LINE L1 -5808 608 552 1375 255 112 9 chrX 71440994 71441414 -105532726 - L1MB4 LINE L1 -5891 493 31 1820 118 39 32 chrX 71441720 71442000 -105532140 - AluJo SINE Alu -30 282 1 1923 143 28 0 chrX 71442583 71442870 -105531270 - AluJb SINE Alu -12 300 6 181 200 20 60 chrX 71443801 71443851 -105530289 + L2 LINE L2 3261 3308 -5 266 221 65 13 chrX 71444342 71444419 -105529721 + HsTC2 DNA Tc2 2 82 -1816 599 155 0 0 chrX 71444422 71444519 -105529621 - FLAM_A SINE Alu -6 136 40 2148 117 3 32 chrX 71445188 71445504 -105528636 - AluSq SINE Alu -6 307 1 527 105 13 0 chrX 71445561 71445637 -105528503 + FLAM_A SINE Alu 44 120 -22 279 333 75 74 chrX 71445640 71445977 -105528163 - L2 LINE L2 -194 3078 2738 623 296 26 79 chrX 71446147 71446566 -105527574 + MLT1J LTR MaLR 111 507 -4 275 375 0 0 chrX 71446572 71446660 -105527480 - L2 LINE L2 -658 2656 2569 1882 133 18 3 chrX 71447059 71447345 -105526795 + AluJb SINE Alu 1 290 -22 215 336 212 7 chrX 71447694 71447977 -105526163 - L2 LINE L2 -1731 1583 1243 252 0 0 0 chrX 71448116 71448144 -105525996 + (A)n Simple_repeat Simple_repeat 1 28 0 735 197 0 0 chrX 71448235 71448413 -105525727 + (TA)n Simple_repeat Simple_repeat 2 179 0 1881 275 207 20 chrX 71448864 71449408 -105524732 - L2 LINE L2 -50 3263 2822 2589 37 0 0 chrX 71449408 71449702 -105524438 + AluY SINE Alu 1 294 -17 1881 275 207 20 chrX 71449702 71450315 -105523825 - L2 LINE L2 -491 2822 1884 640 226 77 46 chrX 71450314 71450509 -105523631 - MIR SINE MIR -24 238 38 * 21 0 0 0 chrX 71450739 71450760 -105523380 + AT_rich Low_complexity Low_complexity 1 21 0 1286 159 49 37 chrX 71450997 71451363 -105522777 + Charlie4a DNA MER1_type 7 447 -61 288 319 12 80 chrX 71451765 71451928 -105522212 - MER5B DNA MER1_type -25 153 2 2293 103 0 0 chrX 71451972 71452272 -105521868 + AluY SINE Alu 1 300 -11 738 262 61 63 chrX 71452810 71453362 -105520778 - L1MCc LINE L1 -4681 2191 1168 1270 192 33 0 chrX 71453606 71453878 -105520262 - MER58B DNA MER1_type -1 340 47 34659 64 6 8 chrX 71453886 71459295 -105514845 + L1PA6 LINE L1 752 6149 -5 338 267 47 0 chrX 71459298 71459384 -105514756 + L1MC4 LINE L1 6614 6703 -1339 * 347 238 71 0 chrX 71459324 71459408 -105514732 - L1MC4 LINE L1 -1339 6703 6614 21 36 0 0 chrX 71459799 71459827 -105514313 + AT_rich Low_complexity Low_complexity 1 28 0 784 261 56 5 chrX 71459839 71460054 -105514086 - MIR SINE MIR -25 237 12 1726 189 18 37 chrX 71460158 71460539 -105513601 + MLT1A2 LTR MaLR 1 374 0 511 290 75 63 chrX 71460981 71461236 -105512904 + MIR SINE MIR 5 262 0 21 57 0 0 chrX 71462439 71462474 -105511666 + AT_rich Low_complexity Low_complexity 1 35 0 368 204 0 11 chrX 71462666 71462759 -105511381 - L1MA9 LINE L1 0 6312 6221 22 0 0 0 chrX 71463539 71463561 -105510579 + AT_rich Low_complexity Low_complexity 1 22 0 249 305 11 52 chrX 71463595 71463769 -105510371 - L1ME4a LINE L1 -201 5920 5754 654 294 72 53 chrX 71463780 71464274 -105509866 - L1ME4a LINE L1 -349 5772 5262 2377 66 0 47 chrX 71464274 71464594 -105509546 - AluY SINE Alu -6 305 1 654 294 72 53 chrX 71464594 71464977 -105509163 - L1ME4a LINE L1 -859 5262 4888 192 352 0 23 chrX 71465069 71465157 -105508983 + L2 LINE L2 3225 3310 -3 1591 149 17 33 chrX 71465302 71465603 -105508537 - L1MA9 LINE L1 -381 5931 5636 673 126 42 0 chrX 71465602 71465836 -105508304 + L1MA9 LINE L1 5951 6290 -22 * 26 30 0 0 chrX 71466236 71466269 -105507871 + AT_rich Low_complexity Low_complexity 1 33 0 1542 124 0 0 chrX 71466769 71466994 -105507146 - AluSg/x SINE Alu -2 310 86 21 36 0 0 chrX 71468096 71468124 -105506016 + AT_rich Low_complexity Low_complexity 1 28 0 3242 202 61 74 chrX 71469205 71469371 -105504769 + L1MD2 LINE L1 5428 5595 -764 2051 52 0 48 chrX 71469371 71469559 -105504581 - AluY SINE Alu 0 311 138 2914 3 0 9 chrX 71469559 71469880 -105504260 - AluYb8 SINE Alu 0 318 1 2051 52 0 48 chrX 71469880 71469963 -105504177 - AluY SINE Alu -173 138 53 3242 202 61 74 chrX 71469963 71470396 -105503744 + L1MD2 LINE L1 5595 6013 -346 357 43 0 0 chrX 71470396 71470443 -105503697 + (TG)n Simple_repeat Simple_repeat 1 47 0 3242 202 61 74 chrX 71470443 71470764 -105503376 + L1MD2 LINE L1 6013 6337 -22 21 36 0 0 chrX 71470817 71470845 -105503295 + AT_rich Low_complexity Low_complexity 1 28 0 541 238 161 21 chrX 71472151 71472344 -105501796 - MIR SINE MIR -11 251 32 24 77 0 0 chrX 71472559 71472611 -105501529 + AT_rich Low_complexity Low_complexity 1 52 0 2130 141 45 28 chrX 71474082 71474509 -105499631 + L1MB7 LINE L1 5735 6168 -16 400 283 181 0 chrX 71475178 71475316 -105498824 - MIR3 SINE MIR -11 197 35 2274 93 0 19 chrX 71475705 71476015 -105498125 - AluSc SINE Alu -5 304 1 24 0 0 0 chrX 71476017 71476041 -105498099 + AT_rich Low_complexity Low_complexity 1 24 0 401 81 16 0 chrX 71480028 71480090 -105494050 + (CCG)n Simple_repeat Simple_repeat 2 64 0 196 282 113 0 chrX 71481114 71481185 -105492955 + MIR SINE MIR 160 238 -24 553 124 0 203 chrX 71481185 71481338 -105492802 - MER58B DNA MER1_type 0 341 220 201 179 0 26 chrX 71481534 71481573 -105492567 + (TG)n Simple_repeat Simple_repeat 2 39 0 1057 207 24 0 chrX 71481619 71481827 -105492313 - MER58B DNA MER1_type -128 213 1 295 391 69 0 chrX 71482056 71482258 -105491882 + L2 LINE L2 2446 2661 -653 193 256 144 72 chrX 71482289 71482484 -105491656 + L2 LINE L2 2530 2738 -576 1398 126 14 5 chrX 71482762 71482977 -105491163 - L1PA16 LINE L1 -9 6157 5941 469 234 70 32 chrX 71483121 71483279 -105490861 + L1MC5 LINE L1 6704 6867 -1094 1208 23 0 0 chrX 71483279 71483411 -105490729 + AluY SINE Alu 1 132 -179 561 254 37 77 chrX 71483540 71483812 -105490328 + L1MC5 LINE L1 6964 7224 -737 2451 230 94 33 chrX 71483878 71484968 -105489172 - L1MC/D LINE L1 -733 5903 4742 443 178 0 0 chrX 71484962 71485052 -105489088 - L1MC/D LINE L1 -4815 1725 1636 * 339 25 0 0 chrX 71485052 71485092 -105489048 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 1179 159 13 0 chrX 71485093 71485319 -105488821 - L1MB1 LINE L1 -5 6163 5935 22416 159 36 11 chrX 71485334 71492842 -105481298 - L1MA3 LINE L1 -2 7722 10 5298 168 34 21 chrX 71492839 71494537 -105479603 - L1MB1 LINE L1 -238 5951 4215 * 2376 186 19 19 chrX 71494528 71495055 -105479085 - L1MB1 LINE L1 -2148 3998 3472 * 3237 235 161 11 chrX 71495100 71496050 -105478090 - L2 LINE L2 -800 2514 1422 2221 203 85 34 chrX 71496115 71496786 -105477354 - L1MC5 LINE L1 -78 7883 7179 3728 261 70 61 chrX 71496862 71498263 -105475877 - L2 LINE L2 -1881 1433 21 204 376 31 6 chrX 71498486 71498648 -105475492 + L2 LINE L2 2869 3034 -238 3086 192 43 17 chrX 71498759 71499461 -105474679 - L1MD2 LINE L1 -16 6343 5624 235 215 13 63 chrX 71499509 71499588 -105474552 - MLT1L LTR MaLR -332 283 209 369 200 127 64 chrX 71499753 71499863 -105474277 + MLT1C LTR MaLR 3 119 -386 1181 228 56 8 chrX 71499893 71500161 -105473979 + MLT1C LTR MaLR 187 467 0 246 288 51 0 chrX 71500162 71500221 -105473919 + MIR SINE MIR 15 76 -186 331 244 26 0 chrX 71500658 71500736 -105473404 - MIR3 SINE MIR -8 200 121 912 255 56 16 chrX 71501852 71502103 -105472037 - MIR SINE MIR -1 261 1 673 261 84 15 chrX 71502718 71502921 -105471219 + MIR SINE MIR 26 242 -20 530 346 10 40 chrX 71503039 71503342 -105470798 - L2 LINE L2 -508 2806 2513 207 269 0 0 chrX 71503360 71503412 -105470728 + CT-rich Low_complexity Low_complexity 1 52 0 387 0 0 0 chrX 71503515 71503558 -105470582 + (T)n Simple_repeat Simple_repeat 1 43 0 3937 203 23 26 chrX 71503563 71504377 -105469763 - L1M1 LINE L1 -6734 831 20 231 146 0 0 chrX 71504407 71504448 -105469692 + (GGAA)n Simple_repeat Simple_repeat 3 43 0 1753 139 10 16 chrX 71505914 71506217 -105467923 - L1PA15 LINE L1 -1 6164 5864 242 307 168 40 chrX 71506346 71506548 -105467592 - L2 LINE L2 -1211 2103 1876 325 297 81 31 chrX 71506967 71507189 -105466951 + L2 LINE L2 3080 3312 -1 1294 278 46 55 chrX 71507396 71507850 -105466290 + MLT1E LTR MaLR 59 508 -85 2236 152 82 5 chrX 71507853 71508254 -105465886 + MSTB1 LTR MaLR 1 432 0 3661 178 29 24 chrX 71508254 71509140 -105465000 + MSTB1-int LTR MaLR 1 871 -709 419 231 93 9 chrX 71509146 71509254 -105464886 + MSTB1-int LTR MaLR 1087 1203 -448 229 49 0 49 chrX 71509717 71509758 -105464382 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chrX 71510534 71510558 -105463582 + AT_rich Low_complexity Low_complexity 1 24 0 214 274 0 0 chrX 71510562 71510613 -105463527 - L2 LINE L2 -2 3311 3261 23 54 0 0 chrX 71511428 71511465 -105462675 + AT_rich Low_complexity Low_complexity 1 37 0 220 286 118 25 chrX 71512614 71512733 -105461407 + L2 LINE L2 2718 2847 -467 310 295 33 46 chrX 71513336 71513473 -105460667 - MIR SINE MIR -71 137 20 301 135 19 0 chrX 71513856 71513908 -105460232 + L1PA7 LINE L1 6087 6139 -15 236 81 48 16 chrX 71513908 71513970 -105460170 + (TA)n Simple_repeat Simple_repeat 1 64 0 1285 96 0 0 chrX 71513970 71514147 -105459993 - L1PA7 LINE L1 -15 6139 5963 2498 74 0 0 chrX 71514318 71514629 -105459511 - AluY SINE Alu 0 311 1 631 291 103 13 chrX 71515107 71515341 -105458799 + MIR SINE MIR 8 262 0 480 259 35 112 chrX 71515438 71515635 -105458505 - MIR3 SINE MIR -11 197 16 242 230 104 74 chrX 71515742 71515877 -105458263 + L3b LINE CR1 1331 1469 -114 224 318 85 31 chrX 71516047 71516176 -105457964 - L3b LINE CR1 -118 1465 1330 420 297 165 23 chrX 71516827 71517093 -105457047 + L1MC/D LINE L1 5521 5824 -1984 725 139 9 0 chrX 71518272 71518387 -105455753 - L1MA1 LINE L1 0 6302 6187 906 109 0 22 chrX 71518419 71518557 -105455583 + L1PB4 LINE L1 6021 6155 -1 261 341 178 0 chrX 71519866 71519995 -105454145 - L2 LINE L2 0 3272 3121 489 214 35 35 chrX 71520176 71520321 -105453819 - L1ME4a LINE L1 -5 6116 5972 410 239 67 0 chrX 71520325 71520459 -105453681 - L1ME4a LINE L1 -195 5926 5784 247 279 52 15 chrX 71520580 71520716 -105453424 - L1ME4a LINE L1 -2411 5397 5257 18956 180 16 14 chrX 71520738 71524689 -105449451 + L1PA14 LINE L1 1870 5812 -1787 402 21 0 0 chrX 71524689 71524736 -105449404 + (CA)n Simple_repeat Simple_repeat 1 47 0 18956 180 16 14 chrX 71524736 71526119 -105448021 + L1PA14 LINE L1 5812 7231 -368 357 82 0 0 chrX 71526119 71526168 -105447972 + (TA)n Simple_repeat Simple_repeat 1 49 0 18956 180 16 14 chrX 71526168 71526534 -105447606 + L1PA14 LINE L1 7231 7595 -4 194 0 39 0 chrX 71526538 71526564 -105447576 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 787 310 190 20 chrX 71528602 71529480 -105444660 - L2 LINE L2 -770 2544 1518 9666 40 0 0 chrX 71530222 71532174 -105441966 - L1PA5 LINE L1 0 6154 4201 26 30 0 0 chrX 71532446 71532479 -105441661 + AT_rich Low_complexity Low_complexity 1 33 0 199 376 0 11 chrX 71532952 71533045 -105441095 + L2 LINE L2 2241 2332 -982 580 196 155 0 chrX 71533693 71533841 -105440299 - MER58C DNA MER1_type 0 215 45 247 292 168 0 chrX 71535524 71535640 -105438500 - MIR SINE MIR -62 146 24 1364 18 6 0 chrX 71535841 71536009 -105438131 - L1PA3 LINE L1 -651 5504 5336 * 5398 21 2 0 chrX 71536008 71536624 -105437516 + L1PA3 LINE L1 5505 6121 -34 5656 20 1 0 chrX 71536009 71536658 -105437482 + L1PA3 LINE L1 5505 6155 0 1763 166 82 75 chrX 71536824 71537288 -105436852 - MLT1C LTR MaLR 0 467 1 22 56 0 0 chrX 71539005 71539041 -105435099 + AT_rich Low_complexity Low_complexity 1 36 0 458 268 16 63 chrX 71539744 71539871 -105434269 + MIR3 SINE MIR 43 163 -45 471 307 118 24 chrX 71539910 71540122 -105434018 - MIR SINE MIR -1 261 30 26 0 0 0 chrX 71540238 71540264 -105433876 + AT_rich Low_complexity Low_complexity 1 26 0 656 186 0 8 chrX 71541775 71541893 -105432247 + FLAM_C SINE Alu 2 118 -15 384 213 0 0 chrX 71542057 71542137 -105432003 - MER116 DNA Mariner 0 80 1 212 336 40 84 chrX 71542276 71542502 -105431638 - L2 LINE L2 -202 3070 2855 566 347 0 0 chrX 71542649 71542822 -105431318 - MIR SINE MIR -64 198 26 266 278 85 39 chrX 71542936 71543067 -105431073 + MIR SINE MIR 21 154 -66 1200 51 6 6 chrX 71543494 71543651 -105430489 - L1PA7 LINE L1 -6 6148 5992 504 321 46 38 chrX 71544026 71544263 -105429877 + MIR SINE MIR 21 259 -3 29 0 0 0 chrX 71544431 71544460 -105429680 + AT_rich Low_complexity Low_complexity 1 29 0 1130 189 62 136 chrX 71545280 71545831 -105428309 - HAL1 LINE L1 -5 2502 1993 377 201 316 43 chrX 71546665 71546804 -105427336 - MER5A DNA MER1_type -2 187 11 220 326 188 26 chrX 71546923 71547300 -105426840 + L2 LINE L2 1712 2149 -1165 2148 127 49 26 chrX 71547301 71547648 -105426492 + THE1B LTR MaLR 1 355 -9 224 328 216 19 chrX 71547650 71547970 -105426170 + L2 LINE L2 2148 2530 -784 295 301 89 24 chrX 71548557 71548680 -105425460 - L2 LINE L2 -5 3308 3178 334 302 48 16 chrX 71548788 71548914 -105425226 - MIR SINE MIR -66 196 67 1877 156 47 47 chrX 71549110 71549470 -105424670 + L1MA3 LINE L1 16 375 -7190 * 3235 146 19 16 chrX 71549465 71550984 -105423156 + L1MA3 LINE L1 6146 7724 0 23 33 0 0 chrX 71553339 71553369 -105420771 + AT_rich Low_complexity Low_complexity 1 30 0 290 379 46 6 chrX 71553416 71553590 -105420550 - L2 LINE L2 -226 3046 2866 233 255 31 0 chrX 71553614 71553712 -105420428 + (TA)n Simple_repeat Simple_repeat 2 102 0 3464 147 5 31 chrX 71554591 71555239 -105418901 + L1MA5 LINE L1 5662 6292 -8 34 0 0 0 chrX 71555239 71555273 -105418867 + AT_rich Low_complexity Low_complexity 1 34 0 1266 44 0 0 chrX 71555860 71556018 -105418122 - L1PA5 LINE L1 0 6154 5997 40 101 0 0 chrX 71556338 71556476 -105417664 + AT_rich Low_complexity Low_complexity 1 138 0 34 0 0 0 chrX 71556701 71556735 -105417405 + AT_rich Low_complexity Low_complexity 1 34 0 241 321 111 19 chrX 71556870 71557032 -105417108 + L2 LINE L2 968 1144 -2170 21 0 0 0 chrX 71557039 71557060 -105417080 + AT_rich Low_complexity Low_complexity 1 21 0 294 250 125 36 chrX 71557096 71557208 -105416932 + L2 LINE L2 3192 3313 0 230 293 16 117 chrX 71557226 71557414 -105416726 + L2 LINE L2 1159 1327 -1987 275 247 364 7 chrX 71557451 71557605 -105416535 - MIR SINE MIR -2 260 52 201 108 0 0 chrX 71557821 71557858 -105416282 + (T)n Simple_repeat Simple_repeat 1 37 0 187 315 14 0 chrX 71557867 71557940 -105416200 + MIR SINE MIR 131 204 -58 438 186 298 0 chrX 71557943 71558067 -105416073 + MER5A DNA MER1_type 28 188 -1 2329 48 0 0 chrX 71558198 71558522 -105415618 + AluY SINE Alu 12 335 0 16961 206 22 19 chrX 71559371 71563085 -105411055 + L1PA16 LINE L1 135 3835 -2982 21220 34 0 0 chrX 71563085 71566432 -105407708 - L1PA3 LINE L1 -3 6152 2806 16961 206 22 19 chrX 71566432 71568456 -105405684 + L1PA16 LINE L1 3835 5887 -930 4252 89 2 2 chrX 71568456 71569041 -105405099 - L1PA13 LINE L1 -7 6156 5572 16961 206 22 19 chrX 71569041 71569971 -105404169 + L1PA16 LINE L1 5887 6812 -5 374 52 0 0 chrX 71571255 71571313 -105402827 - L1MA1 LINE L1 0 6302 6245 15142 87 38 6 chrX 71572577 71575487 -105398653 + L1PA7 LINE L1 3234 6153 -1 3868 181 54 44 chrX 71575487 71576540 -105397600 - L1MDa LINE L1 -4417 2123 1060 564 143 0 0 chrX 71576540 71576617 -105397523 + 5S rRNA rRNA 16 92 -29 2476 257 55 5 chrX 71576685 71577317 -105396823 - L1MDa LINE L1 -5668 872 33 1779 106 30 0 chrX 71577334 71577598 -105396542 - MER51A LTR ERV1 -81 553 282 2009 153 7 0 chrX 71577713 71578020 -105396120 + AluSx SINE Alu 1 309 -3 21 36 0 0 chrX 71578248 71578276 -105395864 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 71581464 71581500 -105392640 + AT_rich Low_complexity Low_complexity 1 36 0 388 273 109 44 chrX 71581664 71581847 -105392293 + MIR SINE MIR 10 204 -58 260 309 53 0 chrX 71582110 71582204 -105391936 + MIR SINE MIR 67 165 -97 182 345 80 44 chrX 71582627 71582740 -105391400 + L2 LINE L2 3178 3294 -19 603 298 170 7 chrX 71583542 71583824 -105390316 - MLT1K LTR MaLR -3 585 258 3222 186 47 2 chrX 71583824 71584665 -105389475 - L1MB8 LINE L1 -237 6439 5561 776 238 71 0 chrX 71584680 71585035 -105389105 - L1MB8 LINE L1 -3791 2853 2472 4882 231 78 33 chrX 71585073 71586850 -105387290 - L1MB8 LINE L1 -4555 2091 281 1740 63 0 18 chrX 71586883 71587103 -105387037 + AluY SINE Alu 1 216 -95 2669 20 0 0 chrX 71587103 71587405 -105386735 + AluY SINE Alu 1 302 -9 736 87 0 0 chrX 71587405 71587509 -105386631 + AluY SINE Alu 206 309 -2 695 268 76 5 chrX 71587524 71587748 -105386392 - L1MB8 LINE L1 -6298 244 5 226 146 36 36 chrX 71587739 71587794 -105386346 - L1M4b LINE L1 -5286 1573 1519 * 626 187 0 0 chrX 71587797 71587904 -105386236 - FLAM_C SINE Alu -36 107 1 381 235 0 0 chrX 71587904 71587985 -105386155 - L1M4b LINE L1 -5336 1523 1443 1239 295 13 67 chrX 71587995 71588459 -105385681 + L1PA13 LINE L1 788 1226 -6348 414 318 84 15 chrX 71588510 71588785 -105385355 + L1PA13 LINE L1 2058 2298 -5276 10126 259 30 36 chrX 71589018 71592647 -105381493 + L1PA13 LINE L1 2182 5771 -1813 2073 117 13 7 chrX 71592690 71592999 -105381141 - AluSx SINE Alu -1 311 1 5946 100 21 30 chrX 71593004 71593988 -105380152 - L1PA13 LINE L1 0 6163 5169 10273 164 40 6 chrX 71593992 71596730 -105377410 + L1PA16 LINE L1 3396 6163 -3 697 253 4 55 chrX 71596747 71597004 -105377136 - L1M4b LINE L1 -5411 1448 1205 228 170 0 19 chrX 71597006 71597059 -105377081 + T-rich Low_complexity Low_complexity 3 54 0 1671 279 52 57 chrX 71597563 71597784 -105376356 - L1M4b LINE L1 -5927 932 711 2619 90 3 6 chrX 71597784 71598140 -105376000 - THE1A LTR MaLR 0 355 1 1671 279 52 57 chrX 71598140 71598681 -105375459 - L1M4b LINE L1 -6148 711 18 3232 265 26 7 chrX 71598724 71599737 -105374403 - L1MEc LINE L1 -2273 3942 2911 * 4582 259 63 50 chrX 71599736 71600884 -105373256 - L1MEc LINE L1 -3537 2678 1546 8945 45 3 1 chrX 71600884 71602767 -105371373 - L1PA5 LINE L1 -7 6147 4256 4582 259 63 50 chrX 71602767 71604145 -105369995 - L1MEc LINE L1 -4669 1546 142 320 235 186 77 chrX 71604176 71604359 -105369781 - MARNA DNA Mariner -199 387 185 21 0 0 0 chrX 71604688 71604709 -105369431 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 71604941 71604971 -105369169 + AT_rich Low_complexity Low_complexity 1 30 0 346 301 212 16 chrX 71605052 71605245 -105368895 - L3 LINE CR1 -22 1555 1325 1466 175 108 22 chrX 71605286 71605601 -105368539 + MER2 DNA MER2_type 2 343 -1 1098 209 19 0 chrX 71605616 71605831 -105368309 + MER20 DNA MER1_type 1 219 0 816 246 22 22 chrX 71606072 71606300 -105367840 + L1ME3A LINE L1 5934 6161 -9 2791 96 46 7 chrX 71608957 71609395 -105364745 + L1MA2 LINE L1 5846 6300 -4 517 195 44 9 chrX 71611620 71611733 -105362407 + L1MC5 LINE L1 7784 7900 -61 182 291 197 24 chrX 71612162 71612289 -105361851 + L2 LINE L2 2614 2762 -552 624 84 0 0 chrX 71612311 71612394 -105361746 - AluSp/q SINE Alu -13 300 218 369 310 46 11 chrX 71612403 71612577 -105361563 + L2 LINE L2 2881 3060 -253 411 254 191 8 chrX 71612666 71612792 -105361348 + MER5A DNA MER1_type 41 189 0 21 0 0 0 chrX 71612832 71612853 -105361287 + AT_rich Low_complexity Low_complexity 1 21 0 207 167 0 0 chrX 71616826 71616862 -105357278 + CT-rich Low_complexity Low_complexity 1 36 0 1788 160 23 19 chrX 71617021 71617328 -105356812 + AluJo SINE Alu 5 312 0 207 0 0 0 chrX 71618399 71618422 -105355718 + (A)n Simple_repeat Simple_repeat 1 23 0 33 25 0 0 chrX 71619515 71619555 -105354585 + AT_rich Low_complexity Low_complexity 1 40 0 36 23 0 0 chrX 71619863 71619906 -105354234 + AT_rich Low_complexity Low_complexity 1 43 0 443 346 79 14 chrX 71620932 71621146 -105352994 + MIR SINE MIR 20 247 -15 901 245 38 0 chrX 71621778 71621990 -105352150 - MIR SINE MIR -30 232 13 870 179 26 42 chrX 71622600 71622790 -105351350 + L1PB4 LINE L1 5967 6153 -3 21 0 0 0 chrX 71622790 71622811 -105351329 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 71624282 71624306 -105349834 + AT_rich Low_complexity Low_complexity 1 24 0 2760 147 48 22 chrX 71625282 71625480 -105348660 + L1MB7 LINE L1 5632 5823 -361 2416 135 34 56 chrX 71625480 71625924 -105348216 + Tigger2a DNA MER2_type 1 434 0 2760 147 48 22 chrX 71625924 71626263 -105347877 + L1MB7 LINE L1 5823 6183 -1 7466 176 13 12 chrX 71626372 71628094 -105346046 + L1PA16 LINE L1 3727 5447 -719 249 33 0 0 chrX 71628094 71628124 -105346016 + (TTA)n Simple_repeat Simple_repeat 2 31 0 7466 176 13 12 chrX 71628124 71628160 -105345980 + L1PA16 LINE L1 5447 5481 -685 4737 81 30 3 chrX 71628160 71628827 -105345313 - L1PB1 LINE L1 -2 6149 5465 7466 176 13 12 chrX 71628827 71629444 -105344696 + L1PA16 LINE L1 5481 6080 -86 21 36 0 0 chrX 71630584 71630612 -105343528 + AT_rich Low_complexity Low_complexity 1 28 0 3276 202 61 74 chrX 71631693 71631859 -105342281 + L1MD2 LINE L1 5428 5595 -764 1977 52 4 48 chrX 71631859 71632046 -105342094 - AluY SINE Alu 0 311 138 2783 6 6 9 chrX 71632046 71632365 -105341775 - AluYb8 SINE Alu 0 318 1 1977 52 4 48 chrX 71632365 71632448 -105341692 - AluY SINE Alu -173 138 53 3276 202 61 74 chrX 71632448 71632881 -105341259 + L1MD2 LINE L1 5595 6013 -346 357 43 0 0 chrX 71632881 71632928 -105341212 + (TG)n Simple_repeat Simple_repeat 1 47 0 3276 202 61 74 chrX 71632928 71633249 -105340891 + L1MD2 LINE L1 6013 6337 -22 21 36 0 0 chrX 71633302 71633330 -105340810 + AT_rich Low_complexity Low_complexity 1 28 0 547 238 161 21 chrX 71634636 71634829 -105339311 - MIR SINE MIR -11 251 32 24 77 0 0 chrX 71635044 71635096 -105339044 + AT_rich Low_complexity Low_complexity 1 52 0 2130 141 45 28 chrX 71636567 71636994 -105337146 + L1MB7 LINE L1 5735 6168 -16 400 283 181 0 chrX 71637663 71637801 -105336339 - MIR3 SINE MIR -11 197 35 2274 93 0 19 chrX 71638190 71638500 -105335640 - AluSc SINE Alu -5 304 1 24 0 0 0 chrX 71638502 71638526 -105335614 + AT_rich Low_complexity Low_complexity 1 24 0 401 81 16 0 chrX 71642513 71642575 -105331565 + (CCG)n Simple_repeat Simple_repeat 2 64 0 196 282 113 0 chrX 71643599 71643670 -105330470 + MIR SINE MIR 160 238 -24 553 124 0 203 chrX 71643670 71643823 -105330317 - MER58B DNA MER1_type 0 341 220 201 179 0 26 chrX 71644019 71644058 -105330082 + (TG)n Simple_repeat Simple_repeat 2 39 0 1057 207 24 0 chrX 71644104 71644312 -105329828 - MER58B DNA MER1_type -128 213 1 295 391 69 0 chrX 71644541 71644743 -105329397 + L2 LINE L2 2446 2661 -653 193 256 144 72 chrX 71644774 71644969 -105329171 + L2 LINE L2 2530 2738 -576 1398 126 14 5 chrX 71645247 71645462 -105328678 - L1PA16 LINE L1 -9 6157 5941 469 234 70 32 chrX 71645606 71645764 -105328376 + L1MC5 LINE L1 6704 6867 -1094 1208 23 0 0 chrX 71645764 71645896 -105328244 + AluY SINE Alu 1 132 -179 561 254 37 77 chrX 71646025 71646297 -105327843 + L1MC5 LINE L1 6964 7224 -737 2451 230 94 33 chrX 71646363 71647453 -105326687 - L1MC/D LINE L1 -733 5903 4742 443 178 0 0 chrX 71647447 71647537 -105326603 - L1MC/D LINE L1 -4815 1725 1636 * 339 25 0 0 chrX 71647537 71647577 -105326563 + (TTTTA)n Simple_repeat Simple_repeat 4 43 0 1179 159 13 0 chrX 71647578 71647804 -105326336 - L1MB1 LINE L1 -5 6163 5935 8772 161 55 13 chrX 71647819 71650804 -105323336 - L1MA3 LINE L1 -2 6303 3188 2763 119 5 2 chrX 71650805 71651234 -105322906 + L1MA3 LINE L1 5876 6305 0 241 284 80 0 chrX 71651256 71651344 -105322796 - L1ME4a LINE L1 -53 6068 5974 301 318 23 23 chrX 71651366 71651495 -105322645 - L1ME4a LINE L1 -581 5540 5412 232 80 100 0 chrX 71652040 71652090 -105322050 - L1MA1 LINE L1 -252 6050 5996 1138 73 30 0 chrX 71652090 71652254 -105321886 + L1MA2 LINE L1 6136 6304 0 25 0 0 0 chrX 71652254 71652279 -105321861 + AT_rich Low_complexity Low_complexity 1 25 0 679 200 110 0 chrX 71653384 71653529 -105320611 - Tigger5 DNA MER2_type 0 2323 2163 1049 205 10 10 chrX 71653529 71653724 -105320416 - Tigger5 DNA MER2_type -2105 218 24 199 280 0 0 chrX 71653740 71653790 -105320350 - L3b LINE CR1 0 1583 1534 1445 286 108 116 chrX 71653875 71654451 -105319689 - L3 LINE CR1 -60 1517 938 180 111 0 0 chrX 71654451 71654478 -105319662 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 1445 286 108 116 chrX 71654478 71655364 -105318776 - L3 LINE CR1 -639 938 67 216 0 0 0 chrX 71656386 71656410 -105317730 + (CTA)n Simple_repeat Simple_repeat 2 25 0 2262 77 23 7 chrX 71658107 71658407 -105315733 - AluSg SINE Alu -5 305 1 260 304 80 4 chrX 71658422 71658616 -105315524 + L1ME LINE L1 5493 5707 -414 269 241 75 12 chrX 71658834 71658939 -105315201 + L1ME4a LINE L1 1238 6104 -2 2470 169 32 76 chrX 71659736 71660304 -105313836 - MER67A LTR ERV1 0 543 1 21 36 0 0 chrX 71660766 71660794 -105313346 + AT_rich Low_complexity Low_complexity 1 28 0 275 327 103 9 chrX 71661207 71661314 -105312826 + MIR SINE MIR 21 137 -71 23 0 0 0 chrX 71661344 71661367 -105312773 + AT_rich Low_complexity Low_complexity 1 23 0 2251 90 3 10 chrX 71661792 71662091 -105312049 - AluSg SINE Alu -13 297 1 219 139 0 0 chrX 71662562 71662598 -105311542 + (GAGAA)n Simple_repeat Simple_repeat 1 36 0 4121 169 20 15 chrX 71663644 71664423 -105309717 + L1MB7 LINE L1 5386 6168 -16 912 205 58 13 chrX 71664423 71664647 -105309493 + L1MB7 LINE L1 5941 6174 -10 372 297 3 11 chrX 71664666 71664766 -105309374 + MER5B DNA MER1_type 75 162 -16 2504 231 80 21 chrX 71664847 71665757 -105308383 + L1M4 LINE L1 1560 2620 -4024 1720 252 57 6 chrX 71665765 71666242 -105307898 + L1ME1 LINE L1 5631 6131 -35 874 309 72 34 chrX 71667337 71667554 -105306586 - L2 LINE L2 0 3313 3106 2610 102 3 0 chrX 71667554 71667908 -105306232 + THE1A LTR MaLR 1 355 0 10931 113 16 0 chrX 71667908 71669463 -105304677 + THE1A-int LTR MaLR 1 1580 0 2523 98 6 14 chrX 71669465 71669821 -105304319 + THE1A LTR MaLR 3 355 0 874 309 72 34 chrX 71669821 71670408 -105303732 - L2 LINE L2 -207 3106 2421 9699 228 24 24 chrX 71670426 71671996 -105302144 + L1PA12 LINE L1 1 1569 -6015 192 77 0 0 chrX 71671996 71672022 -105302118 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9699 228 24 24 chrX 71672022 71674352 -105299788 + L1PA12 LINE L1 1569 4714 -2870 367 94 0 47 chrX 71674367 71674431 -105299709 + L1PA11 LINE L1 6112 6172 -2 2129 167 54 5 chrX 71674477 71674885 -105299255 - MSTA LTR MaLR 0 428 1 8424 195 21 6 chrX 71674885 71676511 -105297629 - MSTA-int LTR MaLR 0 1651 1 2239 151 62 5 chrX 71676511 71676916 -105297224 - MSTA LTR MaLR 0 428 1 654 299 12 0 chrX 71676930 71677097 -105297043 - L2 LINE L2 -952 2362 2194 294 366 52 22 chrX 71677242 71677376 -105296764 - L2 LINE L2 -536 2778 2641 2574 198 17 72 chrX 71677378 71678030 -105296110 + MLT1E3 LTR MaLR 1 616 -8 2168 159 48 0 chrX 71678035 71678407 -105295733 - MLT1B LTR MaLR 0 390 1 1182 314 39 11 chrX 71678411 71678853 -105295287 - L2 LINE L2 -673 2641 2188 21 0 0 0 chrX 71681027 71681048 -105293092 + AT_rich Low_complexity Low_complexity 1 21 0 586 58 23 0 chrX 71681273 71681360 -105292780 + (TAGA)n Simple_repeat Simple_repeat 4 92 0 212 250 0 0 chrX 71681511 71681555 -105292585 + GA-rich Low_complexity Low_complexity 4 47 0 2992 242 25 52 chrX 71682482 71684144 -105289996 + L1MA6 LINE L1 2586 4213 -3352 37334 38 29 2 chrX 71684153 71690181 -105283959 + L1PA3 LINE L1 2 6155 0 803 190 88 0 chrX 71690188 71690404 -105283736 + L1MA6 LINE L1 4200 4434 -3131 7617 187 30 22 chrX 71690416 71692352 -105281788 + L1MA6 LINE L1 5070 7032 -687 14040 193 38 21 chrX 71692356 71694060 -105280080 + L1MA3 LINE L1 16 1690 -6034 432 0 0 0 chrX 71694060 71694108 -105280032 + (CA)n Simple_repeat Simple_repeat 1 48 0 14040 193 38 21 chrX 71694108 71696215 -105277925 + L1MA3 LINE L1 1690 3760 -3964 6857 61 7 5 chrX 71696215 71697393 -105276747 + L1PA6 LINE L1 4963 6142 -12 14040 193 38 21 chrX 71697393 71700880 -105273260 + L1MA3 LINE L1 3760 7714 -10 3088 137 37 51 chrX 71700932 71701560 -105272580 + L1MA6 LINE L1 7030 7648 -71 772 124 0 0 chrX 71701560 71701676 -105272464 + L1MA6 LINE L1 6176 6296 -4 278 333 48 0 chrX 71701684 71701768 -105272372 - MER58A DNA MER1_type -19 88 1 225 271 49 128 chrX 71701786 71701920 -105272220 - L1MEd LINE L1 -2286 3843 3700 1650 131 0 4 chrX 71701920 71702157 -105271983 + AluJb SINE Alu 65 300 -12 225 271 49 128 chrX 71702157 71702491 -105271649 - L1MEd LINE L1 -2429 3700 3412 13693 174 25 10 chrX 71702501 71704907 -105269233 + L1M1 LINE L1 13 2453 -5112 10912 88 3 5 chrX 71704913 71706456 -105267684 - L1PA7 LINE L1 -3201 2945 1405 16635 93 0 0 chrX 71706462 71707692 -105266448 + L1PA7 LINE L1 2945 4174 -1980 2362 78 7 0 chrX 71707692 71708000 -105266140 + AluY SINE Alu 1 310 -1 16635 93 0 0 chrX 71708000 71709997 -105264143 + L1PA7 LINE L1 4173 6149 -5 14259 169 17 23 chrX 71710032 71713339 -105260801 + L1M1 LINE L1 2447 5708 -1927 2294 110 0 0 chrX 71713339 71713649 -105260491 - AluSx SINE Alu -1 311 2 14259 169 17 23 chrX 71713649 71714827 -105259313 + L1M1 LINE L1 5708 6892 -743 1775 98 34 37 chrX 71714834 71714935 -105259205 + L1MA1 LINE L1 6007 6107 -195 1402 148 152 16 chrX 71714935 71715191 -105258949 - AluSg1 SINE Alu -17 292 2 1775 98 34 37 chrX 71715191 71715386 -105258754 + L1MA1 LINE L1 6107 6302 0 31 26 0 0 chrX 71715449 71715487 -105258653 + AT_rich Low_complexity Low_complexity 1 38 0 396 176 251 37 chrX 71715597 71715784 -105258356 - L1MEd LINE L1 -2926 3203 2977 2482 229 60 75 chrX 71715786 71716300 -105257840 + L1ME1 LINE L1 4718 5238 -928 2479 84 0 0 chrX 71716300 71716608 -105257532 - AluSq SINE Alu -3 310 3 2482 229 60 75 chrX 71716608 71717033 -105257107 + L1ME1 LINE L1 5238 5668 -498 2325 92 0 3 chrX 71717033 71717338 -105256802 + AluSq SINE Alu 1 304 -9 2482 229 60 75 chrX 71717338 71717869 -105256271 + L1ME1 LINE L1 5668 6158 -8 795 276 74 40 chrX 71717889 71718246 -105255894 - L1MEd LINE L1 -3145 2984 2641 1730 158 158 30 chrX 71718246 71718651 -105255489 + MSTB2 LTR MaLR 1 457 0 795 276 74 40 chrX 71718651 71718971 -105255169 - L1MEd LINE L1 -3488 2641 2284 23 0 0 0 chrX 71719408 71719431 -105254709 + AT_rich Low_complexity Low_complexity 1 23 0 510 248 29 22 chrX 71719600 71719737 -105254403 + MLT1G LTR MaLR 6 143 -452 2130 164 59 0 chrX 71719738 71720111 -105254029 - MER57A LTR ERV1 0 403 9 712 275 153 78 chrX 71720121 71720521 -105253619 + MLT1G LTR MaLR 109 538 -4 617 298 93 25 chrX 71720530 71721140 -105253000 - L1MEd LINE L1 -4759 1551 873 2917 153 10 0 chrX 71721151 71721647 -105252493 - L1MA4 LINE L1 -47 6253 5753 23 0 0 0 chrX 71721647 71721670 -105252470 + AT_rich Low_complexity Low_complexity 1 23 0 13103 185 17 6 chrX 71721718 71722386 -105251754 - L1PA13 LINE L1 -11 6152 5493 970 39 87 0 chrX 71722386 71722513 -105251627 + MER85 DNA T2_type 1 138 -1 13103 185 17 6 chrX 71722513 71725305 -105248835 - L1PA13 LINE L1 -670 5493 2649 1369 148 106 4 chrX 71725307 71725543 -105248597 + L1PB4 LINE L1 5880 6139 -17 991 214 92 74 chrX 71725569 71726017 -105248123 - L1M4 LINE L1 -2576 3570 3115 443 348 82 9 chrX 71726423 71726656 -105247484 - MIR SINE MIR -12 250 1 782 221 93 0 chrX 71726947 71727119 -105247021 - MER5A DNA MER1_type 0 189 2 292 240 40 87 chrX 71727307 71727457 -105246683 - MER103 DNA DNA -16 150 8 24 53 0 0 chrX 71728389 71728427 -105245713 + AT_rich Low_complexity Low_complexity 1 38 0 4084 184 72 16 chrX 71728648 71729465 -105244675 + MER21B LTR ERV1 1 863 0 228 35 0 0 chrX 71730543 71730572 -105243568 + (TG)n Simple_repeat Simple_repeat 2 30 0 500 320 107 31 chrX 71731051 71731276 -105242864 + MIR SINE MIR 4 245 -17 216 135 0 0 chrX 71732448 71732485 -105241655 + (CCTG)n Simple_repeat Simple_repeat 2 38 0 247 215 101 13 chrX 71934804 71934883 -105039257 + L1ME4a LINE L1 5989 6074 -47 930 82 0 0 chrX 71935831 71935953 -105038187 - AluSg/x SINE Alu -10 302 181 597 247 37 30 chrX 71935981 71936115 -105038025 - L1PA15-16 LINE L1 -6621 242 114 2053 88 6 64 chrX 71936115 71936444 -105037696 - AluSg SINE Alu 0 310 1 597 247 37 30 chrX 71936444 71936557 -105037583 - L1PA15-16 LINE L1 -6749 114 3 182 208 143 65 chrX 71937310 71937387 -105036753 + L3 LINE CR1 395 477 -1100 360 0 0 0 chrX 71937561 71937601 -105036539 + (TG)n Simple_repeat Simple_repeat 1 40 0 309 297 62 38 chrX 71938460 71938647 -105035493 + MIR SINE MIR 19 212 -50 926 184 5 22 chrX 71938831 71939054 -105035086 - L1 LINE L1 -1471 4675 4457 481 346 33 42 chrX 71939054 71939360 -105034780 + L2 LINE L2 3011 3313 0 277 157 88 29 chrX 71939433 71939586 -105034554 + (TATAA)n Simple_repeat Simple_repeat 1 161 0 311 363 8 8 chrX 71941277 71941401 -105032739 - L2 LINE L2 0 3313 3190 244 359 109 16 chrX 71941735 71941863 -105032277 + MIR3 SINE MIR 16 155 -53 1594 240 26 6 chrX 71941883 71942233 -105031907 - MSTD LTR MaLR -39 357 1 299 162 174 44 chrX 71942235 71942364 -105031776 - MER20B DNA MER1_type -2 217 54 1499 324 72 16 chrX 71942373 71943105 -105031035 + L2 LINE L2 1956 2728 -586 559 315 89 69 chrX 71943328 71943775 -105030365 + L2 LINE L2 2858 3313 0 2896 132 16 0 chrX 71944140 71944572 -105029568 - MER83 LTR ERV1 -9 439 1 326 23 23 0 chrX 71944612 71944655 -105029485 + (CA)n Simple_repeat Simple_repeat 2 45 0 426 324 50 28 chrX 71945001 71945183 -105028957 + MIR3 SINE MIR 20 205 -3 22 80 0 0 chrX 71945530 71945580 -105028560 + AT_rich Low_complexity Low_complexity 1 50 0 1831 146 7 0 chrX 71946162 71946436 -105027704 + AluSx SINE Alu 1 276 -36 1051 239 69 39 chrX 71946437 71946873 -105027267 - L1MC4 LINE L1 -124 7918 7470 22 0 0 0 chrX 71947354 71947376 -105026764 + AT_rich Low_complexity Low_complexity 1 22 0 1668 159 25 14 chrX 71947377 71947660 -105026480 - AluJo SINE Alu -26 286 1 630 309 97 73 chrX 71948259 71948846 -105025294 + L2 LINE L2 2708 3313 0 31 44 0 0 chrX 71949029 71949074 -105025066 + AT_rich Low_complexity Low_complexity 1 45 0 378 0 0 0 chrX 71949811 71949853 -105024287 + (TG)n Simple_repeat Simple_repeat 2 43 0 303 335 18 55 chrX 71950458 71950622 -105023518 - L1M2 LINE L1 -6678 171 14 1585 337 51 36 chrX 71950622 71952142 -105021998 - L1PBa LINE L1 -5419 1443 3 538 180 45 0 chrX 71952151 71952262 -105021878 - L1MB4 LINE L1 -37 6143 6028 201 176 0 0 chrX 71952570 71952604 -105021536 + (TA)n Simple_repeat Simple_repeat 1 34 0 270 213 0 53 chrX 71952608 71952702 -105021438 - L1MC4 LINE L1 -1339 6703 6615 585 358 16 29 chrX 71952708 71952954 -105021186 + LTR16C LTR ERVL 100 342 -149 262 324 0 0 chrX 71953054 71953122 -105021018 - L1MEd LINE L1 -5532 587 520 4956 59 3 0 chrX 71953321 71953947 -105020193 + L1PA7 LINE L1 5527 6154 0 314 242 102 25 chrX 71954110 71954267 -105019873 - L1ME2 LINE L1 -213 5951 5783 387 125 0 0 chrX 71954373 71954437 -105019703 - L1MA7 LINE L1 -12 6279 6216 1048 300 53 60 chrX 71954535 71954601 -105019539 - L1MEd LINE L1 -4871 1248 1183 1538 215 0 0 chrX 71954601 71954889 -105019251 + AluSx SINE Alu 6 293 -19 1048 300 53 60 chrX 71954889 71955266 -105018874 - L1MEd LINE L1 -4936 1183 810 1434 194 53 0 chrX 71955266 71955549 -105018591 - AluSx SINE Alu -14 298 1 1048 300 53 60 chrX 71955549 71955908 -105018232 - L1MEd LINE L1 -5309 810 450 2730 191 33 11 chrX 71956160 71956768 -105017372 - L1PB4 LINE L1 -3 6153 5533 3670 200 37 14 chrX 71956768 71957721 -105016419 - L1P5 LINE L1 -524 5632 4655 1579 204 0 3 chrX 71957721 71958015 -105016125 - AluJb SINE Alu -15 297 5 3670 200 37 14 chrX 71958015 71958180 -105015960 - L1P5 LINE L1 -1501 4655 4495 1160 172 49 41 chrX 71958180 71958447 -105015693 + THE1C LTR MaLR 1 269 -106 353 286 34 7 chrX 71958451 71958645 -105015495 - L1ME2 LINE L1 -747 5399 5194 23 0 0 0 chrX 71958678 71958701 -105015439 + AT_rich Low_complexity Low_complexity 1 23 0 982 181 69 23 chrX 71958701 71958961 -105015179 - L1MA7 LINE L1 -3 6288 6017 506 269 18 6 chrX 71958958 71959129 -105015011 + L1ME LINE L1 5292 5464 -700 * 5512 143 12 7 chrX 71959129 71960136 -105014004 + L1PA15 LINE L1 5149 6160 -5 7559 219 37 8 chrX 71960167 71962195 -105011945 - L1M2 LINE L1 -565 5726 3630 1222 250 60 0 chrX 71962204 71962652 -105011488 - L1M2 LINE L1 -2812 3334 2860 543 275 110 6 chrX 71962710 71963037 -105011103 - L1MEc LINE L1 -3517 2563 2203 1069 129 74 0 chrX 71963051 71963253 -105010887 - L1MA6 LINE L1 -4 6296 6080 248 200 0 0 chrX 71963254 71963309 -105010831 + L1MA6 LINE L1 6011 6065 -235 * 384 249 104 10 chrX 71963308 71963528 -105010612 - L1MEc LINE L1 -3869 2232 2012 25 31 0 0 chrX 71963650 71963682 -105010458 + AT_rich Low_complexity Low_complexity 1 32 0 482 297 101 52 chrX 71963849 71964445 -105009695 - L1MEc LINE L1 -4612 1649 1025 309 243 157 7 chrX 71964583 71964723 -105009417 - L1MEc LINE L1 -5195 875 715 23 0 0 0 chrX 71965256 71965279 -105008861 + AT_rich Low_complexity Low_complexity 1 23 0 603 280 20 76 chrX 71965371 71965621 -105008519 - LTR16B LTR ERVL -14 450 215 798 385 28 13 chrX 71966079 71966686 -105007454 - ERVL LTR ERVL -601 5163 4548 1121 381 18 13 chrX 71966736 71967350 -105006790 - ERVL LTR ERVL -1259 4395 3779 222 37 0 0 chrX 71967352 71967379 -105006761 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 943 212 55 0 chrX 71967379 71967615 -105006525 + L1M4 LINE L1 4301 4549 -1597 13391 64 5 7 chrX 71967637 71970177 -105003963 - L1PA6 LINE L1 -5 6149 3604 705 273 100 9 chrX 71970277 71970508 -105003632 + L2 LINE L2 2132 2383 -931 1069 193 9 48 chrX 71971117 71971345 -105002795 - MER20 DNA MER1_type 0 219 1 594 276 44 24 chrX 71972524 71972610 -105001530 + MER112 DNA MER1_type 1 84 -172 282 29 0 0 chrX 71972610 71972645 -105001495 + (CA)n Simple_repeat Simple_repeat 2 36 0 594 276 44 24 chrX 71972645 71972808 -105001332 + MER112 DNA MER1_type 84 255 -1 1823 167 3 0 chrX 71974931 71975230 -104998910 + AluJb SINE Alu 3 302 -10 575 270 111 26 chrX 71975943 71976169 -104997971 - MIR SINE MIR -16 246 2 454 327 20 20 chrX 71976814 71976967 -104997173 + L2 LINE L2 2734 2886 -428 607 286 75 33 chrX 71977369 71977610 -104996530 + MIR SINE MIR 2 252 -10 240 35 0 0 chrX 71978173 71978202 -104995938 + (TG)n Simple_repeat Simple_repeat 2 30 0 333 137 2 19 chrX 71978597 71978655 -104995485 + THE1B LTR MaLR 225 284 -74 556 100 0 0 chrX 71978655 71978735 -104995405 + L1PA6 LINE L1 19 98 -6048 * 7792 110 17 74 chrX 71978733 71980148 -104993992 + L1PA6 LINE L1 623 1956 -4190 23185 66 8 0 chrX 71980148 71984033 -104990107 + L1PA6 LINE L1 2266 6148 -6 37 0 0 0 chrX 71984091 71984128 -104990012 + AT_rich Low_complexity Low_complexity 1 37 0 6596 120 18 3 chrX 71984141 71985191 -104988949 - L1MA3 LINE L1 0 6305 5240 1900 152 46 67 chrX 71985192 71985627 -104988513 + MSTA LTR MaLR 1 426 -2 4165 178 112 23 chrX 71985631 71986539 -104987601 + MSTA-int LTR MaLR 3 991 -589 2110 166 11 3 chrX 71986543 71986917 -104987223 + MSTA-int LTR MaLR 1275 1651 0 2225 172 44 7 chrX 71986917 71987330 -104986810 + MSTA LTR MaLR 1 428 0 9767 205 31 21 chrX 71987330 71987391 -104986749 - L1 LINE L1 -903 6662 6603 217 49 0 49 chrX 71987391 71987432 -104986708 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 9767 205 31 21 chrX 71987432 71990929 -104983211 - L1 LINE L1 -962 6603 3141 1659 169 53 0 chrX 71990929 71991093 -104983047 - AluJo SINE Alu -13 299 112 393 22 0 0 chrX 71991093 71991139 -104983001 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1659 169 53 0 chrX 71991139 71991258 -104982882 - AluJo SINE Alu -200 112 1 9767 205 31 21 chrX 71991258 71991307 -104982833 - L1 LINE L1 -4424 3141 3094 3324 46 0 5 chrX 71991307 71991721 -104982419 - L1PA5 LINE L1 -3 6151 5740 9767 205 31 21 chrX 71991721 71992045 -104982095 - L1 LINE L1 -4471 3094 2780 724 148 27 20 chrX 71992050 71992199 -104981941 - L1 LINE L1 -5015 2550 2401 4506 141 12 40 chrX 71992202 71993119 -104981021 - L1MC1 LINE L1 -317 6085 5221 818 191 19 86 chrX 71993125 71993382 -104980758 - L1MB7 LINE L1 -9 6175 5936 1875 225 30 16 chrX 71993387 71993880 -104980260 - L1MC1 LINE L1 -979 5236 4737 1222 287 38 5 chrX 71993858 71994436 -104979704 - L1MC1 LINE L1 -1739 4476 3880 * 969 238 24 32 chrX 71994956 71995297 -104978843 - L1MC1 LINE L1 -2333 3882 3545 422 314 64 0 chrX 71995366 71995602 -104978538 - L1MC1 LINE L1 -4576 1820 1570 306 309 60 24 chrX 71995608 71995776 -104978364 - L1MC1 LINE L1 -4795 1601 1428 1888 272 62 0 chrX 71995981 71996415 -104977725 + MLT1G LTR MaLR 118 578 -12 484 276 21 0 chrX 71996449 71996641 -104977499 + L1ME LINE L1 4143 4338 -1808 1270 241 114 15 chrX 71996664 71997409 -104976731 + L1ME LINE L1 4648 5473 -697 668 311 201 22 chrX 71997410 71997818 -104976322 + L3 LINE CR1 999 1479 -98 2167 145 61 32 chrX 71997862 71998378 -104975762 - MLT2A2 LTR ERVL -1 553 1 2114 113 10 70 chrX 71999192 71999357 -104974783 + THE1C LTR MaLR 2 175 -200 194 22 44 44 chrX 71999357 71999402 -104974738 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1903 110 42 0 chrX 71999406 71999669 -104974471 - AluSc SINE Alu -35 274 1 2114 113 10 70 chrX 71999669 71999896 -104974244 + THE1C LTR MaLR 178 375 0 23 92 0 0 chrX 71999949 72000014 -104974126 + AT_rich Low_complexity Low_complexity 1 65 0 499 254 95 47 chrX 72001174 72001204 -104972936 + MIR SINE MIR 7 34 -228 13451 62 24 0 chrX 72001204 72003696 -104970444 + L1PA6 LINE L1 3640 6151 -3 499 254 95 47 chrX 72003696 72003834 -104970306 + MIR SINE MIR 34 183 -79 1133 103 54 34 chrX 72006710 72006914 -104967226 - L1PA16 LINE L1 0 6166 5959 1176 93 0 0 chrX 72007513 72007674 -104966466 + AluY SINE Alu 144 304 -7 3673 144 25 117 chrX 72007758 72009134 -104965006 - L1MA4 LINE L1 0 6300 5063 559 285 60 45 chrX 72009176 72009376 -104964764 - MIR SINE MIR -48 214 12 2267 74 0 20 chrX 72010804 72011102 -104963038 + AluY SINE Alu 1 292 -19 1966 167 0 0 chrX 72011832 72012137 -104962003 - AluSx SINE Alu -7 305 1 523 304 19 67 chrX 72012156 72012426 -104961714 - MIR SINE MIR 0 262 6 521 234 193 5 chrX 72013328 72013520 -104960620 - MIR SINE MIR -32 230 3 2823 92 29 38 chrX 72014028 72014132 -104960008 + MLT2A1 LTR ERVL 1 104 -340 2518 30 0 10 chrX 72014132 72014429 -104959711 + AluY SINE Alu 1 294 -17 2823 92 29 38 chrX 72014429 72014772 -104959368 + MLT2A1 LTR ERVL 104 444 0 745 190 0 7 chrX 72014943 72015085 -104959055 + FLAM_C SINE Alu 3 143 0 615 300 97 35 chrX 72016667 72017203 -104956937 - L2 LINE L2 -996 2318 1750 238 320 30 10 chrX 72018098 72018198 -104955942 + L3 LINE CR1 1471 1572 -5 5138 122 17 12 chrX 72019124 72019966 -104954174 - L1MA3 LINE L1 0 6305 5460 4956 222 32 6 chrX 72019966 72021463 -104952677 - L1 LINE L1 -2856 3290 1762 444 175 0 0 chrX 72021463 72021560 -104952580 + (TA)n Simple_repeat Simple_repeat 1 97 0 267 258 0 0 chrX 72021563 72021652 -104952488 + L1MC4 LINE L1 6615 6703 -1339 971 180 10 10 chrX 72021658 72021864 -104952276 + L1 LINE L1 4171 4376 -1770 * 1435 54 78 0 chrX 72021858 72022062 -104952078 + L1PBa LINE L1 2192 2411 -4452 8662 201 19 13 chrX 72022091 72024147 -104949993 - L1 LINE L1 -1632 4514 2446 332 359 106 7 chrX 72024774 72024916 -104949224 - L3b LINE CR1 -24 1559 1404 7517 31 8 2 chrX 72025008 72026153 -104947987 - L1PA4 LINE L1 -7 6148 5002 1336 174 92 39 chrX 72026534 72026815 -104947325 - AluJo SINE Alu -16 296 1 2246 146 67 5 chrX 72028111 72028530 -104945610 - L1PB4 LINE L1 -1 6155 5711 819 159 32 32 chrX 72028725 72028914 -104945226 - L1MA8 LINE L1 -111 6180 5992 373 298 75 101 chrX 72028934 72029310 -104944830 - L3 LINE CR1 -156 1421 1056 357 116 0 0 chrX 72029313 72029382 -104944758 + (TA)n Simple_repeat Simple_repeat 2 70 0 216 55 14 96 chrX 72029384 72029457 -104944683 + (TTTTA)n Simple_repeat Simple_repeat 4 70 0 1188 204 123 54 chrX 72029472 72029805 -104944335 + MLT1D LTR MaLR 148 503 -2 32 43 0 0 chrX 72030542 72030588 -104943552 + AT_rich Low_complexity Low_complexity 1 46 0 3229 113 32 63 chrX 72030922 72031548 -104942592 - MER4B LTR ERV1 0 779 1 4281 132 22 66 chrX 72031972 72032793 -104941347 - LTR1 LTR ERV1 0 785 1 259 258 116 70 chrX 72032811 72032999 -104941141 + MIR SINE MIR 16 201 -61 1105 298 58 48 chrX 72033010 72033506 -104940634 - L2 LINE L2 -2 3311 2811 323 321 0 0 chrX 72034738 72034844 -104939296 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 356 222 111 32 chrX 72034874 72035000 -104939140 + MIR SINE MIR 127 262 0 332 264 129 21 chrX 72035065 72035205 -104938935 + MIR SINE MIR 95 249 -13 354 61 0 0 chrX 72035226 72035275 -104938865 + (ATG)n Simple_repeat Simple_repeat 2 50 0 212 178 22 0 chrX 72035407 72035452 -104938688 + CT-rich Low_complexity Low_complexity 2 47 0 533 205 31 19 chrX 72035686 72035847 -104938293 - MER96B DNA MER1_type? -238 179 17 301 282 0 16 chrX 72036291 72036376 -104937764 - MIR SINE MIR -78 130 47 575 283 98 0 chrX 72036457 72036641 -104937499 - MIR SINE MIR -14 248 47 523 296 42 77 chrX 72037751 72038011 -104936129 + MIR SINE MIR 1 251 -11 227 333 42 14 chrX 72039361 72039433 -104934707 + MER5A DNA MER1_type 71 144 -45 342 107 0 0 chrX 72039708 72039764 -104934376 + (GA)n Simple_repeat Simple_repeat 1 56 0 15863 174 57 19 chrX 72039951 72041622 -104932518 + L1MA2 LINE L1 17 1623 -5942 384 22 0 0 chrX 72041622 72041667 -104932473 + (GA)n Simple_repeat Simple_repeat 2 46 0 15863 174 57 19 chrX 72041667 72043219 -104930921 + L1MA2 LINE L1 1623 3363 -4202 1676 190 26 3 chrX 72043230 72043619 -104930521 + L1MA2 LINE L1 5759 6156 -1409 3074 193 60 27 chrX 72043620 72044988 -104929152 + MER52A LTR ERV1 1 1755 0 5595 140 36 30 chrX 72044988 72046548 -104927592 + L1MA2 LINE L1 6154 7723 0 305 346 47 43 chrX 72046584 72046795 -104927345 - MIR SINE MIR -50 212 1 234 273 104 13 chrX 72046826 72046903 -104927237 - MIR SINE MIR 0 262 179 1338 60 35 35 chrX 72047483 72047683 -104926457 - L1PA7 LINE L1 -6 6148 5949 242 330 36 45 chrX 72048058 72048170 -104925970 - L2 LINE L2 -15 3298 3188 7680 203 20 9 chrX 72048547 72051048 -104923092 - L1P4 LINE L1 -399 6470 3942 749 184 43 25 chrX 72051025 72051188 -104922952 - L1P4 LINE L1 -5268 1581 1416 * 4260 158 5 14 chrX 72051188 72051922 -104922218 - L1P4 LINE L1 -6091 758 31 257 0 30 0 chrX 72051936 72051969 -104922171 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 231 303 26 13 chrX 72051982 72052058 -104922082 + L2 LINE L2 3234 3310 -3 211 279 103 15 chrX 72052458 72052526 -104921614 + L2 LINE L2 3229 3302 -11 340 237 104 37 chrX 72052674 72052809 -104921331 + L1ME1 LINE L1 6006 6149 -17 31 0 0 0 chrX 72052809 72052840 -104921300 + AT_rich Low_complexity Low_complexity 1 31 0 2346 73 0 29 chrX 72052946 72053260 -104920880 + AluSc SINE Alu 1 305 -4 422 278 22 26 chrX 72054286 72054427 -104919713 + MIR SINE MIR 4 145 -63 1401 123 46 0 chrX 72055347 72055566 -104918574 + MER30 DNA MER1_type 2 230 0 658 276 12 0 chrX 72056181 72056344 -104917796 - FRAM SINE Alu -1 165 1 799 189 57 4 chrX 72056557 72056931 -104917209 + LTR40b LTR ERVL 1 519 0 2316 91 3 0 chrX 72057718 72058014 -104916126 - AluSc SINE Alu -12 297 1 21 82 0 0 chrX 72058329 72058378 -104915762 + AT_rich Low_complexity Low_complexity 1 49 0 593 275 81 24 chrX 72059963 72060174 -104913966 - MIR SINE MIR -4 258 36 1175 201 39 14 chrX 72060174 72060648 -104913492 - MLT1E LTR MaLR 0 593 13 297 277 11 11 chrX 72061204 72061298 -104912842 - L1ME LINE L1 -452 5669 5576 771 253 5 16 chrX 72063117 72063303 -104910837 + MIR SINE MIR 78 261 -1 664 335 26 9 chrX 72063986 72064213 -104909927 + MIR SINE MIR 32 262 0 2526 212 41 5 chrX 72065019 72065633 -104908507 + L1MD3 LINE L1 7354 7989 -6 239 321 57 38 chrX 72065698 72065804 -104908336 - L2 LINE L2 -24 3289 3182 222 306 14 0 chrX 72067168 72067240 -104906900 + MIR SINE MIR 71 143 -65 21 0 0 0 chrX 72067834 72067855 -104906285 + AT_rich Low_complexity Low_complexity 1 21 0 33197 108 10 14 chrX 72068035 72074207 -104899933 - L1PA7 LINE L1 0 6154 11 1876 61 0 0 chrX 72074380 72074627 -104899513 + L1P LINE L1 1445 1691 -4455 2374 83 3 10 chrX 72074739 72075039 -104899101 + AluY SINE Alu 1 298 -13 2427 74 3 0 chrX 72075315 72075625 -104898515 - AluY SINE Alu 0 311 1 232 306 67 45 chrX 72076208 72076342 -104897798 + L2 LINE L2 3169 3305 -8 2086 88 73 4 chrX 72077157 72077431 -104896709 + AluSg SINE Alu 1 293 -17 481 204 10 10 chrX 72077460 72077558 -104896582 + FRAM SINE Alu 61 158 -18 720 168 0 0 chrX 72078112 72078225 -104895915 - AluJb SINE Alu -199 113 1 21 0 0 0 chrX 72078818 72078839 -104895301 + AT_rich Low_complexity Low_complexity 1 21 0 446 106 0 0 chrX 72079111 72079177 -104894963 - MADE1 DNA Mariner 0 80 15 2200 109 0 0 chrX 72080885 72081178 -104892962 - AluSp SINE Alu -20 293 1 2660 256 104 10 chrX 72082240 72083274 -104890866 + L1PBa LINE L1 13 1144 -5719 10064 210 21 6 chrX 72083275 72087248 -104886892 + L1PBa LINE L1 1297 5383 -1479 270 81 0 0 chrX 72087709 72087746 -104886394 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 585 312 29 14 chrX 72088236 72088512 -104885628 + L1ME LINE L1 5475 5754 -367 234 0 0 0 chrX 72089414 72089440 -104884700 + (A)n Simple_repeat Simple_repeat 1 26 0 344 366 119 5 chrX 72089466 72089668 -104884472 - MIR SINE MIR -19 243 19 9834 174 16 28 chrX 72090067 72090479 -104883661 + L1MA2 LINE L1 3155 3570 -2734 1844 98 0 0 chrX 72090479 72090730 -104883410 + L1PA7 LINE L1 5899 6154 0 9834 174 16 28 chrX 72090730 72092491 -104881649 + L1MA2 LINE L1 3570 5289 -1015 1740 184 7 0 chrX 72092491 72092785 -104881355 + AluSx SINE Alu 1 296 -16 9834 174 16 28 chrX 72092785 72093790 -104880350 + L1MA2 LINE L1 5289 6304 0 1721 148 196 6 chrX 72094100 72094458 -104879682 - MSTA LTR MaLR -2 426 1 6446 210 31 6 chrX 72094458 72095733 -104878407 - MSTA-int LTR MaLR 0 1651 346 1429 106 34 55 chrX 72095733 72095902 -104878238 + MER30 DNA MER1_type 1 172 -58 2196 116 17 17 chrX 72095902 72096255 -104877885 + THE1A LTR MaLR 1 353 -2 11667 99 1 6 chrX 72096257 72096315 -104877825 + THE1A-int LTR MaLR 1 58 -1522 2137 124 0 0 chrX 72096315 72096605 -104877535 + AluSx SINE Alu 1 290 -22 11667 99 1 6 chrX 72096605 72098134 -104876006 + THE1A-int LTR MaLR 58 1580 0 1955 169 8 8 chrX 72098134 72098489 -104875651 + THE1A LTR MaLR 1 355 0 1429 106 34 55 chrX 72098489 72098550 -104875590 + MER30 DNA MER1_type 171 230 0 1852 175 41 0 chrX 72098550 72098888 -104875252 - MSTA-int LTR MaLR -1226 354 3 1544 177 191 6 chrX 72098890 72099251 -104874889 - MSTA LTR MaLR 0 428 1 4238 191 48 8 chrX 72102691 72103964 -104870176 - L1MB7 LINE L1 -9 6175 4840 26 0 0 0 chrX 72104041 72104067 -104870073 + AT_rich Low_complexity Low_complexity 1 26 0 310 190 0 0 chrX 72104070 72104128 -104870012 - L1MA7 LINE L1 -62 6229 6172 1166 158 133 4 chrX 72104129 72104370 -104869770 - L1MA7 LINE L1 -237 6054 5783 249 239 51 8 chrX 72104371 72104488 -104869652 + (TA)n Simple_repeat Simple_repeat 1 122 0 274 282 41 0 chrX 72104533 72104703 -104869437 + (TA)n Simple_repeat Simple_repeat 2 178 0 586 77 0 0 chrX 72104705 72104783 -104869357 - L1MA7 LINE L1 -511 5780 5703 * 2181 236 17 56 chrX 72104782 72105586 -104868554 - L1MB7 LINE L1 -1305 4841 4069 14256 238 16 9 chrX 72105683 72111277 -104862863 - L1PA16 LINE L1 0 6817 1158 1429 337 40 13 chrX 72111368 72111899 -104862241 - L1PA16 LINE L1 -6242 545 1 2564 245 102 11 chrX 72111910 72112899 -104861241 - L1MB7 LINE L1 -2125 4021 2931 405 0 0 0 chrX 72112899 72112944 -104861196 + (TG)n Simple_repeat Simple_repeat 2 46 0 2564 245 102 11 chrX 72112944 72112998 -104861142 - L1MB7 LINE L1 -3215 2931 2883 34 42 0 0 chrX 72113006 72113054 -104861086 + AT_rich Low_complexity Low_complexity 1 48 0 2219 134 20 3 chrX 72113054 72113411 -104860729 - L1PB1 LINE L1 -8 6143 5781 202 250 0 0 chrX 72113413 72113453 -104860687 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 306 270 0 0 chrX 72113453 72113542 -104860598 - L1MC4 LINE L1 -1339 6703 6615 248 230 23 23 chrX 72113522 72113609 -104860531 + L1MC4 LINE L1 6617 6703 -1339 * 260 219 0 0 chrX 72113581 72113645 -104860495 - L1MC4 LINE L1 -1339 6703 6640 201 94 0 0 chrX 72113659 72113691 -104860449 + (TA)n Simple_repeat Simple_repeat 1 32 0 13644 192 28 19 chrX 72113692 72115789 -104858351 - L1P5 LINE L1 -369 6498 4421 207 0 0 0 chrX 72115789 72115812 -104858328 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13644 192 28 19 chrX 72115812 72118919 -104855221 - L1P5 LINE L1 -2446 4421 1093 3166 222 60 3 chrX 72118920 72119846 -104854294 - L1P5 LINE L1 -5815 1048 6 695 281 21 0 chrX 72119842 72120084 -104854056 - L1MEc LINE L1 -3254 3703 3457 * 396 237 50 0 chrX 72120088 72120227 -104853913 - L1MEc LINE L1 -3582 3375 3230 * 6534 141 24 10 chrX 72120206 72121642 -104852498 - L1MA3 LINE L1 -1 7115 5661 2583 164 2 7 chrX 72121645 72122091 -104852049 + L1PA16 LINE L1 5525 5968 -198 9718 44 3 0 chrX 72122592 72124559 -104849581 - L1PA5 LINE L1 -1 6153 4183 24 67 0 0 chrX 72124985 72125030 -104849110 + AT_rich Low_complexity Low_complexity 1 45 0 4383 148 16 9 chrX 72125238 72126042 -104848098 - L1MA3 LINE L1 -1287 4859 4050 870 242 74 44 chrX 72126051 72126842 -104847298 - L1MEc LINE L1 -3699 3258 2476 259 269 84 8 chrX 72126852 72126971 -104847169 - L1MEc LINE L1 -6720 139 12 322 282 59 0 chrX 72127281 72127366 -104846774 - MIR SINE MIR -18 244 155 1799 199 43 6 chrX 72127366 72127712 -104846428 + MLT2D LTR ERVL 4 362 -52 344 270 3 0 chrX 72127756 72128065 -104846075 + (TA)n Simple_repeat Simple_repeat 1 310 0 313 286 198 8 chrX 72128087 72128213 -104845927 - MIR SINE MIR -100 162 13 272 326 12 0 chrX 72129154 72129240 -104844900 - L2 LINE L2 0 3313 3227 2483 156 8 60 chrX 72129264 72129746 -104844394 + MSTB2 LTR MaLR 1 457 0 5930 223 60 52 chrX 72129747 72131074 -104843066 + MSTB2-int LTR MaLR 2 1345 -306 1619 184 0 4 chrX 72131074 72131352 -104842788 + AluJo SINE Alu 24 300 -12 5930 223 60 52 chrX 72131352 72131662 -104842478 + MSTB2-int LTR MaLR 1345 1651 0 817 155 12 54 chrX 72131662 72131830 -104842310 + MSTB2 LTR MaLR 1 161 -296 447 313 73 6 chrX 72131940 72132119 -104842021 - MER117 DNA MER1_type 0 197 7 302 312 50 21 chrX 72132124 72132265 -104841875 - MIR3 SINE MIR -48 160 16 479 322 35 13 chrX 72133331 72133624 -104840516 - ERVL LTR ERVL -5314 360 39 25 0 0 0 chrX 72133642 72133667 -104840473 + AT_rich Low_complexity Low_complexity 1 25 0 6963 130 8 1 chrX 72133719 72135004 -104839136 - L1P4 LINE L1 -658 5510 4219 2060 187 17 15 chrX 72135017 72135195 -104838945 - L1P4 LINE L1 -686 6917 6741 1629 191 0 29 chrX 72135195 72135510 -104838630 - AluJb SINE Alu -4 308 3 2060 187 17 15 chrX 72135510 72135902 -104838238 - L1P4 LINE L1 -862 6741 6344 * 8121 249 50 24 chrX 72135900 72136603 -104837537 - L1P4 LINE L1 -1747 5837 5154 186 43 0 0 chrX 72136603 72136626 -104837514 + (TTG)n Simple_repeat Simple_repeat 2 24 0 8121 249 50 24 chrX 72136626 72141366 -104832774 - L1P4 LINE L1 -2430 5154 212 263 27 0 27 chrX 72141366 72141403 -104832737 + (TGGGGG)n Simple_repeat Simple_repeat 1 36 0 8121 249 50 24 chrX 72141403 72141617 -104832523 - L1P4 LINE L1 -7372 212 5 1307 231 46 13 chrX 72141624 72142083 -104832057 - L1M4c LINE L1 -3931 2715 2242 2510 221 56 14 chrX 72142105 72142803 -104831337 - L1M4c LINE L1 -4617 2029 1303 41824 40 23 2 chrX 72142808 72148822 -104825318 - L1PA3 LINE L1 -4 6151 3 1481 263 109 47 chrX 72148827 72149686 -104824454 - L1M4c LINE L1 -5223 1319 407 1228 238 131 51 chrX 72150019 72150468 -104823672 - MLT1D LTR MaLR 0 505 21 2136 215 10 9 chrX 72150886 72151379 -104822761 + MER89 LTR ERV1 2 559 0 1973 124 16 23 chrX 72151667 72151973 -104822167 - AluJb SINE Alu -8 304 1 800 227 44 20 chrX 72152098 72152301 -104821839 + MIR SINE MIR 49 256 -6 187 322 35 23 chrX 72152638 72152725 -104821415 - MER5A DNA MER1_type 0 189 102 186 182 0 0 chrX 72152839 72152872 -104821268 - MER5B DNA MER1_type -2 176 144 * 319 196 0 168 chrX 72152862 72152906 -104821234 + MER5B DNA MER1_type 89 106 -72 2771 13 0 6 chrX 72152906 72153219 -104820921 - AluYa5 SINE Alu 0 311 1 319 196 0 168 chrX 72153219 72153281 -104820859 + MER5B DNA MER1_type 106 177 -1 * 549 338 72 9 chrX 72153281 72153589 -104820551 - L2 LINE L2 -622 2692 2365 251 317 49 24 chrX 72153656 72153779 -104820361 - MER5A DNA MER1_type -3 186 61 527 100 0 0 chrX 72153853 72153923 -104820217 - L1PA10 LINE L1 -199 5969 5900 1141 105 29 0 chrX 72153923 72154092 -104820048 + L1PA10 LINE L1 5980 6156 -12 258 147 44 15 chrX 72155214 72155282 -104818858 + (TA)n Simple_repeat Simple_repeat 2 71 0 344 278 293 0 chrX 72156327 72156460 -104817680 + MER5A DNA MER1_type 15 186 -3 203 138 0 0 chrX 72156606 72156635 -104817505 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 889 173 0 6 chrX 72156642 72156798 -104817342 - L1PB4 LINE L1 -12 6144 5990 781 211 48 6 chrX 72157068 72157344 -104816796 + MER33 DNA MER1_type 1 355 -8 557 278 55 15 chrX 72158798 72159002 -104815138 + MIR SINE MIR 37 250 -12 193 253 89 25 chrX 72159022 72159101 -104815039 - L2 LINE L2 -33 3280 3197 10225 183 31 32 chrX 72159775 72159845 -104814295 - L1PA10 LINE L1 -636 5529 5460 4212 102 37 0 chrX 72159845 72160464 -104813676 + L1PA10 LINE L1 5526 6167 -1 10225 183 31 32 chrX 72160464 72162862 -104811278 - L1P4 LINE L1 -705 5460 3072 778 268 69 13 chrX 72163505 72163736 -104810404 + MIR SINE MIR 2 245 -17 509 311 162 22 chrX 72163796 72164024 -104810116 + MIR SINE MIR 3 262 0 303 303 20 10 chrX 72164046 72164145 -104809995 - L1MC/D LINE L1 -2006 5802 5703 3139 171 6 4 chrX 72164158 72164707 -104809433 + L1PB4 LINE L1 5597 6146 -10 22 0 0 0 chrX 72164707 72164729 -104809411 + AT_rich Low_complexity Low_complexity 1 22 0 276 265 15 0 chrX 72165321 72165389 -104808751 + GA-rich Low_complexity Low_complexity 4 72 0 373 135 250 0 chrX 72165428 72165524 -104808616 - L1MA8 LINE L1 -3 6288 6169 216 336 106 0 chrX 72165920 72166024 -104808116 - MIR SINE MIR -64 144 30 352 276 0 0 chrX 72167546 72167662 -104806478 + (TA)n Simple_repeat Simple_repeat 2 117 0 1181 127 0 0 chrX 72170489 72170654 -104803486 - AluSg/x SINE Alu -12 300 136 288 77 0 0 chrX 72170657 72170696 -104803444 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 905 120 0 0 chrX 72170711 72170844 -104803296 - AluJb SINE Alu -179 133 1 358 260 183 10 chrX 72171197 72171301 -104802839 - L2 LINE L2 -1 3271 3150 636 319 97 0 chrX 72172335 72172561 -104801579 - MIR SINE MIR 0 262 15 896 121 17 35 chrX 72172561 72172735 -104801405 + MER53 DNA DNA 1 171 -18 345 296 50 56 chrX 72173073 72173254 -104800886 + MIR3 SINE MIR 15 188 -62 195 42 0 0 chrX 72173964 72173988 -104800152 + (TAA)n Simple_repeat Simple_repeat 1 24 0 418 295 49 16 chrX 72174942 72175064 -104799076 - MIR SINE MIR -67 141 16 552 145 120 0 chrX 72175407 72175524 -104798616 + L1MA2 LINE L1 6174 6304 0 21 0 0 0 chrX 72175865 72175886 -104798254 + AT_rich Low_complexity Low_complexity 1 21 0 205 283 41 91 chrX 72176133 72176287 -104797853 + MER5A DNA MER1_type 7 163 -26 * 230 347 0 0 chrX 72176286 72176361 -104797779 - MIR3 SINE MIR -48 160 86 5564 135 18 2 chrX 72176705 72177968 -104796172 - L1PA15 LINE L1 -6 6159 4886 197 221 0 73 chrX 72178664 72178732 -104795408 + MIR SINE MIR 127 189 -73 222 171 12 24 chrX 72178736 72178818 -104795322 + (TA)n Simple_repeat Simple_repeat 1 81 0 324 238 0 24 chrX 72178987 72179071 -104795069 - MIR SINE MIR 0 262 181 1352 209 72 31 chrX 72179138 72179497 -104794643 - MLT1A2 LTR MaLR 0 374 1 316 360 74 10 chrX 72179579 72179782 -104794358 + L2 LINE L2 841 1056 -2258 221 271 17 17 chrX 72179920 72179979 -104794161 + L2 LINE L2 3178 3236 -36 415 294 201 5 chrX 72180010 72180224 -104793916 + L3 LINE CR1 1316 1571 -6 224 219 0 0 chrX 72180833 72180874 -104793266 + CT-rich Low_complexity Low_complexity 2 42 0 1783 130 13 40 chrX 72181185 72181484 -104792656 - AluJb SINE Alu -21 291 1 4274 205 20 22 chrX 72181531 72183043 -104791097 - L1MB7 LINE L1 0 6184 4677 748 283 6 0 chrX 72183045 72183225 -104790915 + MER58B DNA MER1_type 161 341 0 998 190 28 0 chrX 72183277 72183456 -104790684 - MLT1D LTR MaLR -60 445 262 255 190 17 0 chrX 72183476 72183534 -104790606 - L1MB3 LINE L1 -31 6152 6094 1851 154 7 3 chrX 72183554 72183860 -104790280 - L1MA4 LINE L1 -289 6011 5705 1592 236 32 38 chrX 72183858 72184414 -104789726 - L1MB7 LINE L1 -1460 4686 4134 * 1072 276 44 11 chrX 72184425 72184975 -104789165 - L1MB7 LINE L1 -2770 3376 2809 * 9009 192 35 17 chrX 72184969 72185324 -104788816 - L1PA15 LINE L1 -134 6031 5684 2720 30 0 0 chrX 72185324 72185629 -104788511 - AluY SINE Alu -6 305 1 9009 192 35 17 chrX 72185629 72187584 -104786556 - L1PA15 LINE L1 -481 5684 3651 279 0 0 0 chrX 72187584 72187615 -104786525 + (TG)n Simple_repeat Simple_repeat 2 32 0 9009 192 35 17 chrX 72187615 72188320 -104785820 - L1PA15 LINE L1 -2514 3651 2960 * 12309 98 39 1 chrX 72188309 72190130 -104784010 - L1P LINE L1 -1041 5105 3215 4136 252 47 25 chrX 72190108 72191655 -104782485 - L1M4 LINE L1 -1699 4447 2867 * 798 188 0 42 chrX 72191655 72191820 -104782320 + FRAM SINE Alu 1 155 -21 420 55 0 0 chrX 72192253 72192308 -104781832 + (GA)n Simple_repeat Simple_repeat 1 55 0 315 71 0 0 chrX 72193219 72193261 -104780879 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chrX 72193765 72193794 -104780346 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 72193866 72193895 -104780245 + AT_rich Low_complexity Low_complexity 1 29 0 388 305 74 41 chrX 72194112 72194381 -104779759 + L1ME4a LINE L1 5795 6072 -49 28 48 0 0 chrX 72194606 72194648 -104779492 + AT_rich Low_complexity Low_complexity 1 42 0 30 27 0 0 chrX 72195040 72195077 -104779063 + AT_rich Low_complexity Low_complexity 1 37 0 192 247 111 37 chrX 72196904 72196985 -104777155 + L3 LINE CR1 1001 1087 -490 184 235 59 44 chrX 72197168 72197236 -104776904 + MIR3 SINE MIR 128 196 -12 637 325 21 42 chrX 72197302 72197539 -104776601 - MIR SINE MIR 0 262 31 25 0 0 0 chrX 72197670 72197695 -104776445 + AT_rich Low_complexity Low_complexity 1 25 0 2784 260 61 44 chrX 72197695 72200131 -104774009 - L1ME1 LINE L1 -5 6161 5383 6975 215 32 6 chrX 72200142 72202926 -104771214 - L1PA16 LINE L1 0 6166 3042 12754 96 2 2 chrX 72202927 72204659 -104769481 - HERVL-A1 LTR ERVL -3923 1731 1 2759 93 83 5 chrX 72204661 72204690 -104769450 - MLT2A1 LTR ERVL -2 442 417 288 0 0 0 chrX 72204690 72204722 -104769418 + (CA)n Simple_repeat Simple_repeat 2 33 0 2759 93 83 5 chrX 72204722 72205102 -104769038 - MLT2A1 LTR ERVL -27 417 1 4199 250 41 7 chrX 72205106 72206362 -104767778 - L1 LINE L1 -1553 4593 3296 1608 196 6 6 chrX 72206368 72206689 -104767451 - L1PA16 LINE L1 -9 6157 5837 364 332 39 43 chrX 72206864 72207096 -104767044 - LTR16C LTR ERVL 0 491 261 712 345 78 38 chrX 72207530 72208296 -104765844 - ERVL LTR ERVL -388 5376 4580 602 328 96 0 chrX 72208313 72208584 -104765556 - ERVL LTR ERVL -1410 4354 4058 914 295 77 49 chrX 72208774 72209242 -104764898 - MLT1H LTR MaLR 0 549 69 316 279 135 61 chrX 72209287 72209696 -104764444 - ERVL LTR ERVL -1851 3803 3320 2080 225 63 2 chrX 72209899 72210388 -104763752 + LTR53 LTR ERVL 1 519 0 1767 240 13 11 chrX 72210526 72210996 -104763144 + L1P LINE L1 4849 5319 -827 310 95 0 0 chrX 72211295 72211337 -104762803 - 5S rRNA rRNA -79 42 1 238 284 32 21 chrX 72211831 72211926 -104762214 + MIR SINE MIR 106 201 -61 30 59 0 0 chrX 72212535 72212586 -104761554 + AT_rich Low_complexity Low_complexity 1 51 0 754 174 5 1 chrX 72212770 72212953 -104761187 + L1PA16 LINE L1 5940 6158 -8 296 209 467 27 chrX 72214279 72214504 -104759636 + MER5C DNA MER1_type 1 324 0 681 304 54 5 chrX 72214589 72214793 -104759347 + MIR SINE MIR 49 262 0 1284 132 0 0 chrX 72216052 72216256 -104757884 - L1MA4 LINE L1 -9 6291 6088 389 249 64 23 chrX 72216308 72216476 -104757664 + MIR SINE MIR 3 262 0 314 259 123 25 chrX 72216649 72216811 -104757329 - L1ME4a LINE L1 -1 6120 5943 23 0 0 0 chrX 72217272 72217295 -104756845 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 72217475 72217497 -104756643 + AT_rich Low_complexity Low_complexity 1 22 0 5628 145 56 7 chrX 72217497 72219187 -104754953 - L1MA1 LINE L1 0 6302 4523 26 64 0 0 chrX 72219291 72219338 -104754802 + AT_rich Low_complexity Low_complexity 1 47 0 234 313 62 55 chrX 72219728 72219856 -104754284 - L2 LINE L2 -12 3301 3173 22 56 0 0 chrX 72220399 72220435 -104753705 + AT_rich Low_complexity Low_complexity 1 36 0 252 304 10 39 chrX 72221467 72221569 -104752571 + MIR SINE MIR 4 102 -160 242 109 17 67 chrX 72222069 72222188 -104751952 + (TA)n Simple_repeat Simple_repeat 1 113 0 24 32 0 0 chrX 72222708 72222739 -104751401 + AT_rich Low_complexity Low_complexity 1 31 0 4725 107 9 13 chrX 72223530 72224224 -104749916 - LTR8 LTR ERV1 0 691 1 548 300 63 10 chrX 72224232 72224439 -104749701 + MIR SINE MIR 50 262 0 682 209 30 112 chrX 72226194 72226462 -104747678 + MIR SINE MIR 11 256 -6 207 0 0 0 chrX 72226463 72226486 -104747654 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 279 305 20 7 chrX 72226498 72226649 -104747491 + (CTA)n Simple_repeat Simple_repeat 1 153 0 22670 119 23 12 chrX 72227937 72231536 -104742604 - L1P LINE L1 -2496 3650 11 417 287 78 39 chrX 72231556 72231814 -104742326 - L1MEd LINE L1 -5033 1086 819 21 0 0 0 chrX 72231862 72231883 -104742257 + AT_rich Low_complexity Low_complexity 1 21 0 342 333 0 9 chrX 72232011 72232122 -104742018 - LTR16C LTR ERVL -1 490 381 1034 219 4 15 chrX 72232225 72232485 -104741655 - L1 LINE L1 -1414 4968 4712 207 0 0 0 chrX 72232485 72232508 -104741632 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1821 194 10 12 chrX 72232515 72232538 -104741602 - L1 LINE L1 -1634 4748 4726 1767 190 7 0 chrX 72232538 72232848 -104741292 - AluJo SINE Alu 0 312 1 1821 194 10 12 chrX 72232848 72233241 -104740899 - L1 LINE L1 -1656 4726 4333 1872 250 87 27 chrX 72233243 72234122 -104740018 - L1 LINE L1 -2853 3529 2704 2232 66 14 7 chrX 72234122 72234410 -104739730 - AluY SINE Alu -21 290 1 1872 250 87 27 chrX 72234410 72234492 -104739648 - L1 LINE L1 -3678 2704 2628 853 274 92 0 chrX 72234492 72234806 -104739334 + MER2 DNA MER2_type 1 343 -1 1872 250 87 27 chrX 72234806 72235688 -104738452 - L1 LINE L1 -3754 2628 1472 2714 154 16 19 chrX 72235722 72236209 -104737931 - L1PB4 LINE L1 -3 6153 5668 1816 270 34 39 chrX 72236210 72236847 -104737293 - L1MEc LINE L1 -2898 3317 2683 2053 87 0 21 chrX 72236847 72237170 -104736970 - AluY SINE Alu 0 317 1 1816 270 34 39 chrX 72237170 72237406 -104736734 - L1MEc LINE L1 -3532 2683 2447 651 288 33 5 chrX 72237404 72237619 -104736521 - L1MEc LINE L1 -6131 265 45 * 204 163 0 23 chrX 72237624 72237667 -104736473 + T-rich Low_complexity Low_complexity 5 46 0 22 35 0 0 chrX 72237935 72237964 -104736176 + AT_rich Low_complexity Low_complexity 1 29 0 1468 176 15 28 chrX 72238168 72238470 -104735670 + MER4E LTR ERV1 427 779 0 4616 119 0 23 chrX 72238626 72239333 -104734807 + LTR8 LTR ERV1 1 691 0 30112 110 16 12 chrX 72240317 72245162 -104728978 + L1P2 LINE L1 691 5548 -606 485 278 42 28 chrX 72245793 72246077 -104728063 + L1MC5 LINE L1 7506 7793 -168 336 275 47 70 chrX 72246139 72246397 -104727743 + L1MC4a LINE L1 5011 5262 -884 249 164 49 0 chrX 72246422 72246483 -104727657 + L1MC4a LINE L1 5376 5439 -2369 1167 257 116 43 chrX 72246507 72247129 -104727011 + L1MC4a LINE L1 5511 6177 -1631 312 320 109 6 chrX 72247243 72247418 -104726722 + L2 LINE L2 3118 3310 -3 17183 68 2 2 chrX 72297790 72300723 -104673417 - L1PA6 LINE L1 -115 6039 3105 7016 16 0 9 chrX 72300719 72301560 -104672580 - L1PA2 LINE L1 0 6155 5349 * 20387 108 23 13 chrX 72301559 72304639 -104669501 - L1PA6 LINE L1 -3025 3121 12 2148 144 12 0 chrX 72304652 72304992 -104669148 - L1P4 LINE L1 -402 5766 5423 2879 176 63 2 chrX 72305153 72305946 -104668194 + L1P5 LINE L1 4934 5791 -365 937 199 119 40 chrX 72306071 72306373 -104667767 - L1MDa LINE L1 -4132 2408 2083 2424 179 43 36 chrX 72306374 72306479 -104667661 - L1MB8 LINE L1 -1 6177 6074 1168 209 42 67 chrX 72306479 72306885 -104667255 - MSTD LTR MaLR 0 396 1 2424 179 43 36 chrX 72306885 72307337 -104666803 - L1MB8 LINE L1 -104 6074 5616 * 2475 221 25 20 chrX 72307336 72308025 -104666115 - L1MB8 LINE L1 -808 5338 4647 920 163 10 20 chrX 72308053 72308249 -104665891 + L1MB8 LINE L1 5981 6174 -4 7494 156 21 12 chrX 72308779 72310987 -104663153 - L1PA13 LINE L1 -6 6157 3942 262 254 14 0 chrX 72311838 72311909 -104662231 + L2 LINE L2 3242 3313 0 287 298 40 12 chrX 72312185 72312342 -104661798 + MIR SINE MIR 21 262 0 363 339 16 39 chrX 72312750 72312877 -104661263 + MIR SINE MIR 20 143 -65 443 248 27 7 chrX 72313151 72313300 -104660840 + L1MA9 LINE L1 5277 5428 -2380 231 61 0 0 chrX 72314576 72314609 -104659531 + (CA)n Simple_repeat Simple_repeat 2 34 0 680 166 86 0 chrX 72315742 72315893 -104658247 + L1MA9 LINE L1 6112 6275 -37 2280 111 0 0 chrX 72316636 72316942 -104657198 - AluSx SINE Alu -6 306 1 321 253 0 12 chrX 72316963 72317046 -104657094 + MIR3 SINE MIR 87 168 -40 22 0 0 0 chrX 72317541 72317563 -104656577 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 72317694 72317727 -104656413 + AT_rich Low_complexity Low_complexity 1 33 0 240 141 28 14 chrX 72319566 72319637 -104654503 + (TAA)n Simple_repeat Simple_repeat 2 73 0 905 168 0 11 chrX 72320058 72320237 -104653903 + MER96B DNA MER1_type? 4 180 -237 317 253 13 0 chrX 72320283 72320358 -104653782 + MER96B DNA MER1_type? 342 417 0 29 28 0 0 chrX 72324763 72324799 -104649341 + AT_rich Low_complexity Low_complexity 1 36 0 278 276 66 0 chrX 72324956 72325032 -104649108 - MIR3 SINE MIR -3 205 125 1629 163 50 10 chrX 72325263 72325563 -104648577 + AluJb SINE Alu 1 312 0 501 277 41 31 chrX 72325683 72325878 -104648262 - MIR SINE MIR -46 216 20 192 282 0 0 chrX 72327828 72327945 -104646195 + GA-rich Low_complexity Low_complexity 3 119 0 381 282 168 42 chrX 72327947 72328327 -104645813 + HAL1 LINE L1 875 1302 -1205 22 35 0 0 chrX 72328413 72328442 -104645698 + AT_rich Low_complexity Low_complexity 1 29 0 1426 165 25 85 chrX 72329020 72329383 -104644757 - L1MB7 LINE L1 -16 6168 5828 1956 177 130 2 chrX 72329383 72329582 -104644558 + MER6A DNA MER2_type 1 173 -692 342 0 0 0 chrX 72329582 72329620 -104644520 + (TG)n Simple_repeat Simple_repeat 2 39 0 1956 177 130 2 chrX 72329620 72329827 -104644313 + MER6A DNA MER2_type 173 459 -146 806 199 40 6 chrX 72329927 72330103 -104644037 + MER6A DNA MER2_type 424 605 0 4637 201 69 17 chrX 72330103 72331745 -104642395 - L1MB7 LINE L1 -349 5829 4102 21 36 0 0 chrX 72333171 72333199 -104640941 + AT_rich Low_complexity Low_complexity 1 28 0 345 295 43 61 chrX 72333793 72334070 -104640070 + L1M2 LINE L1 143 1101 -6484 2225 146 74 22 chrX 72334585 72334990 -104639150 - MSTA LTR MaLR -2 426 1 8762 184 27 3 chrX 72334990 72336602 -104637538 - MSTA-int LTR MaLR 0 1651 1 2402 139 54 10 chrX 72336602 72337012 -104637128 - MSTA LTR MaLR 0 428 1 12952 218 16 14 chrX 72337556 72338791 -104635349 + L1PA15 LINE L1 1532 2762 -4054 2014 146 0 0 chrX 72338791 72339078 -104635062 - AluSx SINE Alu -25 287 1 12952 218 16 14 chrX 72339078 72343110 -104631030 + L1PA15 LINE L1 2762 6816 0 24 53 0 0 chrX 72343870 72343908 -104630232 + AT_rich Low_complexity Low_complexity 1 38 0 544 256 0 75 chrX 72344176 72344336 -104629804 - MIR SINE MIR -4 258 111 351 293 81 0 chrX 72344532 72344631 -104629509 - L2 LINE L2 0 3313 3207 774 271 73 73 chrX 72344828 72345264 -104628876 - MLT1F LTR MaLR -106 436 1 833 285 92 64 chrX 72345270 72345943 -104628197 - HAL1 LINE L1 -1242 1265 574 789 258 128 88 chrX 72345943 72346022 -104628118 - MLT2C2 LTR ERVL 0 520 446 297 0 0 0 chrX 72346022 72346055 -104628085 + (TG)n Simple_repeat Simple_repeat 2 34 0 789 258 128 88 chrX 72346055 72346397 -104627743 - MLT2C2 LTR ERVL -74 446 82 247 318 0 64 chrX 72346423 72346533 -104627607 - HAL1 LINE L1 -1932 575 473 707 219 0 0 chrX 72346534 72346657 -104627483 - FLAM_A SINE Alu -10 123 1 370 213 0 0 chrX 72346701 72346770 -104627370 + MLT1G LTR MaLR 93 202 -347 3806 180 8 47 chrX 72346944 72347781 -104626359 - L1PB4 LINE L1 0 6156 5352 13317 197 20 23 chrX 72347796 72351033 -104623107 - L1PB1 LINE L1 -1 6866 3620 2047 67 0 8 chrX 72351033 72351288 -104622852 - AluY SINE Alu -3 308 56 13317 197 20 23 chrX 72351288 72351857 -104622283 - L1PB1 LINE L1 -3247 3620 3051 2455 28 0 3 chrX 72351857 72352147 -104621993 + L1PA3 LINE L1 5867 6155 0 13317 197 20 23 chrX 72352147 72353099 -104621041 - L1PB1 LINE L1 -3816 3051 2119 * 27931 132 18 56 chrX 72353075 72359501 -104614639 - L1PA8 LINE L1 0 6888 717 4177 181 45 11 chrX 72359504 72361309 -104612831 - L1PB1 LINE L1 -4777 2086 33 2086 239 23 13 chrX 72361291 72361894 -104612246 - L1 LINE L1 -761 5385 4777 * 3568 88 2 42 chrX 72361898 72362418 -104611722 + LTR3b LTR ERVK 2 500 0 2289 223 25 22 chrX 72362421 72363049 -104611091 - L1 LINE L1 -1371 4775 4146 843 229 18 57 chrX 72363059 72363115 -104611025 - MER20 DNA MER1_type 0 219 162 2284 89 0 13 chrX 72363115 72363417 -104610723 + AluY SINE Alu 1 298 -13 843 229 18 57 chrX 72363417 72363587 -104610553 - MER20 DNA MER1_type -57 162 2 442 256 177 25 chrX 72363592 72363795 -104610345 + MLT1G LTR MaLR 160 393 -197 195 42 0 0 chrX 72363803 72363827 -104610313 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4975 184 10 10 chrX 72363842 72365024 -104609116 - L1PA16 LINE L1 -8 6158 4976 2145 193 57 40 chrX 72365037 72365946 -104608194 + L1PA5 LINE L1 3239 6167 -5 3445 212 21 8 chrX 72366943 72367765 -104606375 + L1 LINE L1 3850 4681 -1465 235 180 66 0 chrX 72367896 72367957 -104606183 + MLT1G LTR MaLR 531 595 0 716 289 30 63 chrX 72367957 72368383 -104605757 + HAL1 LINE L1 1274 1685 -822 2341 171 14 22 chrX 72368444 72368889 -104605251 + L1 LINE L1 564 1004 -4324 1965 193 34 9 chrX 72368891 72369327 -104604813 + L1 LINE L1 3492 3938 -2390 349 70 88 0 chrX 72369327 72369384 -104604756 - L1PA13 LINE L1 -3 6160 6099 726 146 0 0 chrX 72369402 72369525 -104604615 - L1P LINE L1 -913 5233 5111 2178 201 2 18 chrX 72369525 72369978 -104604162 + L1 LINE L1 3927 4372 -1956 672 329 55 33 chrX 72369978 72370722 -104603418 + ERVL LTR ERVL 3339 4080 -1405 441 188 0 12 chrX 72371399 72371484 -104602656 - LTR67 LTR ERVL -17 540 457 348 185 12 0 chrX 72371499 72371580 -104602560 + L1PA16 LINE L1 6082 6163 -3 366 198 0 0 chrX 72372105 72372186 -104601954 - L1PA13 LINE L1 -15 6148 6068 225 65 0 0 chrX 72372301 72372332 -104601808 + (CA)n Simple_repeat Simple_repeat 2 32 0 1436 181 7 7 chrX 72372333 72372603 -104601537 + L1PB4 LINE L1 5793 6062 -94 805 213 96 45 chrX 72372616 72372950 -104601190 - L1M4 LINE L1 -1460 4686 4336 1706 179 0 39 chrX 72373666 72373978 -104600162 - AluJo SINE Alu -12 300 1 489 316 16 47 chrX 72373987 72374150 -104599990 - MIR3 SINE MIR -13 195 37 2282 106 29 9 chrX 72374150 72374498 -104599642 - THE1A LTR MaLR 0 355 1 489 316 16 47 chrX 72374498 72374527 -104599613 - MIR3 SINE MIR -171 37 9 2335 96 0 0 chrX 72375159 72375451 -104598689 - AluSg SINE Alu -18 292 1 1005 150 6 0 chrX 72375499 72375672 -104598468 + L1PA15 LINE L1 5848 6021 -144 2049 141 132 30 chrX 72375675 72376078 -104598062 - L1P4 LINE L1 -406 5755 5312 2621 155 15 13 chrX 72376087 72376544 -104597596 - L1PA15 LINE L1 0 6165 5708 5344 256 34 23 chrX 72376546 72376707 -104597433 - L1PA13 LINE L1 -3211 3586 3428 2408 158 41 0 chrX 72376707 72377118 -104597022 + MSTA LTR MaLR 1 428 0 5344 256 34 23 chrX 72377118 72380160 -104593980 - L1PA13 LINE L1 -3369 3428 1 5798 59 1 0 chrX 72380500 72381227 -104592913 + L1PA7 LINE L1 5412 6139 -15 198 103 0 0 chrX 72381347 72381376 -104592764 + (CAT)n Simple_repeat Simple_repeat 1 29 0 292 301 68 25 chrX 72381394 72381557 -104592583 - MIR3 SINE MIR -32 176 7 23 92 0 0 chrX 72382254 72382319 -104591821 + AT_rich Low_complexity Low_complexity 1 65 0 723 271 27 11 chrX 72382450 72382638 -104591502 + MIR SINE MIR 40 230 -32 24 32 0 0 chrX 72382751 72382782 -104591358 + AT_rich Low_complexity Low_complexity 1 31 0 647 134 0 0 chrX 72382783 72382880 -104591260 + L1M1 LINE L1 5639 5735 -567 22 0 0 0 chrX 72383073 72383095 -104591045 + AT_rich Low_complexity Low_complexity 1 22 0 197 234 31 47 chrX 72383186 72383250 -104590890 + L3 LINE CR1 1479 1541 -36 28 29 0 0 chrX 72383337 72383372 -104590768 + AT_rich Low_complexity Low_complexity 1 35 0 1322 171 168 23 chrX 72384269 72384691 -104589449 - Charlie1b DNA MER1_type 0 523 42 30 0 0 0 chrX 72385076 72385106 -104589034 + AT_rich Low_complexity Low_complexity 1 30 0 700 171 96 0 chrX 72385365 72385552 -104588588 + L1ME2 LINE L1 5126 5330 -816 9516 196 30 13 chrX 72385557 72388590 -104585550 + L1PB4 LINE L1 3072 6154 -2 1764 244 85 2 chrX 72388594 72389159 -104584981 + L1ME2 LINE L1 5319 5930 -234 1084 221 28 0 chrX 72389159 72389376 -104584764 - MER58A DNA MER1_type -1 223 1 261 153 34 51 chrX 72389380 72389439 -104584701 + L1ME2 LINE L1 5935 5992 -172 649 231 201 52 chrX 72389566 72389945 -104584195 + MLT1E3 LTR MaLR 4 376 -248 232 217 0 0 chrX 72389956 72390002 -104584138 + L1MA4A LINE L1 3820 3865 -2281 * 5040 179 23 32 chrX 72390001 72390776 -104583364 + L1MA4A LINE L1 4162 4912 -1391 2900 19 0 0 chrX 72390776 72391094 -104583046 + AluYb8 SINE Alu 1 318 0 5040 179 23 32 chrX 72391094 72391867 -104582273 + L1MA4A LINE L1 4912 5690 -613 3723 145 12 21 chrX 72391867 72392534 -104581606 + L1PB4 LINE L1 5492 6154 -2 3434 144 9 19 chrX 72392540 72393171 -104580969 + L1MA4A LINE L1 5673 6297 -6 491 214 10 0 chrX 72393172 72393275 -104580865 + L1 LINE L1 5062 5165 -981 3733 108 3 9 chrX 72393278 72393842 -104580298 - L1PA13 LINE L1 0 6163 5603 6082 111 14 5 chrX 72393853 72395036 -104579104 - L1PA10 LINE L1 0 6168 4980 7430 34 11 0 chrX 72395040 72396077 -104578063 - L1PA4 LINE L1 0 6391 5354 9170 130 1 3 chrX 72396080 72397493 -104576647 - L1PA4 LINE L1 -1163 5219 3810 186 103 0 0 chrX 72397499 72397528 -104576612 + (GGGAA)n Simple_repeat Simple_repeat 2 30 0 1455 169 7 36 chrX 72397541 72397820 -104576320 + LTR1 LTR ERV1 1 271 -514 3034 164 68 4 chrX 72397828 72398384 -104575756 + LTR1 LTR ERV1 194 785 0 8005 147 14 3 chrX 72398384 72399786 -104574354 - L1PA4 LINE L1 -2569 3813 2399 233 281 0 0 chrX 72399770 72399834 -104574306 + L1 LINE L1 5150 5213 -933 * 2273 45 41 0 chrX 72399827 72400254 -104573886 - L1PA5 LINE L1 -602 5552 5107 5186 42 3 0 chrX 72400254 72400871 -104573269 + L1PA5 LINE L1 5529 6150 -4 625 186 103 26 chrX 72400882 72401038 -104573102 - MER93b LTR ERV1 -194 179 12 254 320 0 13 chrX 72401188 72401266 -104572874 + L2 LINE L2 3234 3310 -3 28 29 0 0 chrX 72401597 72401632 -104572508 + AT_rich Low_complexity Low_complexity 1 35 0 43804 43 1 1 chrX 72401645 72407797 -104566343 - L1PA4 LINE L1 -1 6154 1 3973 183 25 18 chrX 72407807 72408661 -104565479 + L1 LINE L1 3785 4644 -1502 * 4854 205 18 9 chrX 72408653 72410592 -104563548 - L1PA15 LINE L1 -18 6798 4844 4137 273 21 4 chrX 72410593 72411895 -104562245 - L1PA15 LINE L1 -2918 3879 2555 749 225 23 9 chrX 72411893 72412111 -104562029 - L1PA15 LINE L1 -4618 2169 1949 * 910 240 31 19 chrX 72412091 72412408 -104561732 - L1M4 LINE L1 -1496 5148 4828 9971 256 32 53 chrX 72412419 72415226 -104558914 + L1PA12 LINE L1 2 2868 -4716 3281 82 7 0 chrX 72415226 72415666 -104558474 + L1PA8 LINE L1 5724 6166 -6 9971 256 32 53 chrX 72415666 72418534 -104555606 + L1PA12 LINE L1 2868 6096 -1488 1221 290 84 11 chrX 72418538 72419059 -104555081 - L1M4 LINE L1 -5973 569 11 1152 261 63 48 chrX 72419059 72419627 -104554513 + L1ME1 LINE L1 5572 6148 -18 3353 104 0 0 chrX 72419654 72420126 -104554014 - L1PA8 LINE L1 -5 6167 5696 3878 133 38 10 chrX 72420126 72420736 -104553404 - L1P3 LINE L1 -5822 639 13 1980 148 0 13 chrX 72420736 72421041 -104553099 - AluSx SINE Alu -7 305 5 3168 113 2 2 chrX 72421391 72421832 -104552308 + MLT2A2 LTR ERVL 13 453 0 302 226 0 0 chrX 72421882 72421944 -104552196 + L1MEc LINE L1 43 104 -6292 225 0 0 0 chrX 72421952 72421977 -104552163 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 70 0 0 chrX 72421991 72422034 -104552106 + AT_rich Low_complexity Low_complexity 1 43 0 540 211 0 0 chrX 72422042 72422137 -104552003 - FLAM_A SINE Alu -19 123 29 1900 162 38 27 chrX 72422137 72422508 -104551632 - THE1C LTR MaLR 0 375 1 301 155 0 17 chrX 72422508 72422566 -104551574 - THE1C-int LTR MaLR 0 1580 1524 2786 248 82 24 chrX 72422589 72422960 -104551180 + L1MEc LINE L1 121 469 -5927 395 19 19 0 chrX 72422960 72423012 -104551128 + (CA)n Simple_repeat Simple_repeat 1 53 0 2786 248 82 24 chrX 72423012 72423645 -104550495 + L1MEc LINE L1 469 1183 -5213 1408 176 16 0 chrX 72423682 72423938 -104550202 + L1MD2 LINE L1 5566 5825 -534 3804 126 27 10 chrX 72423943 72424529 -104549611 + L1PB1 LINE L1 8 603 -5858 * 5255 145 11 3 chrX 72424520 72425409 -104548731 + L1PB1 LINE L1 1875 2770 -3691 * 9149 201 24 7 chrX 72425402 72428481 -104545659 + L1PB1 LINE L1 3328 6459 -7 486 271 23 16 chrX 72428483 72428612 -104545528 - MLT1A2 LTR MaLR -25 349 220 308 314 69 0 chrX 72428824 72428926 -104545214 - MIR3 SINE MIR -14 194 86 14521 149 63 44 chrX 72430417 72434076 -104540064 - MER109 Unknown Unknown 0 2432 1 2308 75 0 0 chrX 72434081 72434362 -104539778 + AluSc SINE Alu 1 281 -28 3310 104 19 11 chrX 72434675 72435202 -104538938 - L1MA2 LINE L1 -5 7718 7188 7498 187 31 4 chrX 72435209 72437549 -104536591 - L1PA13 LINE L1 -11 6152 3768 12578 199 16 10 chrX 72437549 72440985 -104533155 - L1MA2 LINE L1 -524 7199 3744 992 178 0 0 chrX 72440985 72441137 -104533003 + AluJb SINE Alu 138 289 -23 306 87 0 0 chrX 72441148 72441194 -104532946 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 16498 177 82 6 chrX 72441195 72444663 -104529477 - L1MA2 LINE L1 -3816 3749 18 324 0 0 0 chrX 72444765 72444801 -104529339 + (TG)n Simple_repeat Simple_repeat 2 37 0 3174 98 55 10 chrX 72445849 72446338 -104527802 + MER9 LTR ERVK 1 511 0 198 0 0 0 chrX 72447045 72447067 -104527073 + (A)n Simple_repeat Simple_repeat 1 22 0 496 326 22 22 chrX 72447469 72447653 -104526487 + MER5A DNA MER1_type 1 184 -5 229 270 0 50 chrX 72448373 72448473 -104525667 + A-rich Low_complexity Low_complexity 5 99 0 14111 146 7 16 chrX 72448575 72450648 -104523492 + Tigger1 DNA MER2_type 1 2093 -325 420 67 0 0 chrX 72450648 72450708 -104523432 + (TG)n Simple_repeat Simple_repeat 1 60 0 2294 58 7 0 chrX 72450708 72450986 -104523154 - AluY SINE Alu -31 280 1 14111 146 7 16 chrX 72450986 72451350 -104522790 + Tigger1 DNA MER2_type 2091 2415 -3 2028 148 6 0 chrX 72451373 72451684 -104522456 + AluSq SINE Alu 1 313 0 342 115 0 0 chrX 72451684 72451736 -104522404 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 2174 41 22 2 chrX 72451801 72457486 -104516654 + L1PA3 LINE L1 1 6144 -11 2174 24 0 0 chrX 72457486 72457738 -104516402 + L1PA3 LINE L1 5899 6151 -4 21 0 0 0 chrX 72457757 72457778 -104516362 + AT_rich Low_complexity Low_complexity 1 21 0 302 188 208 21 chrX 72458073 72458169 -104515971 + L1M4 LINE L1 4858 4971 -1175 661 260 72 0 chrX 72458201 72458382 -104515758 - MIR SINE MIR -64 198 5 345 356 21 26 chrX 72458441 72458496 -104515644 - MIR3 SINE MIR -3 205 151 520 313 105 19 chrX 72458496 72458809 -104515331 + MER102b DNA MER1_type 2 341 0 345 356 21 26 chrX 72458809 72458944 -104515196 - MIR3 SINE MIR -57 151 16 180 0 0 0 chrX 72459157 72459177 -104514963 + (T)n Simple_repeat Simple_repeat 1 20 0 1586 201 0 24 chrX 72459284 72459577 -104514563 - AluJo SINE Alu -26 286 1 233 273 0 0 chrX 72459871 72459926 -104514214 + Charlie8 DNA MER1_type 1350 1404 -1013 24 0 0 0 chrX 72461039 72461063 -104513077 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chrX 72461212 72461247 -104512893 + AT_rich Low_complexity Low_complexity 1 35 0 2561 71 0 0 chrX 72461454 72461765 -104512375 + AluY SINE Alu 1 311 0 1120 169 15 5 chrX 72462262 72462463 -104511677 - MSTB1 LTR MaLR 0 432 230 2702 129 14 14 chrX 72462465 72462899 -104511241 + MER57B LTR ERV1 1 434 0 24 0 0 0 chrX 72462966 72462990 -104511150 + AT_rich Low_complexity Low_complexity 1 24 0 333 242 0 0 chrX 72463227 72463293 -104510847 + MER57B-int LTR ERV1 234 299 -7238 22 0 0 0 chrX 72463374 72463396 -104510744 + AT_rich Low_complexity Low_complexity 1 22 0 5572 28 5 0 chrX 72463620 72464275 -104509865 + L1PA4 LINE L1 5496 6153 -2 23 0 0 0 chrX 72464275 72464298 -104509842 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 72464854 72464876 -104509264 + AT_rich Low_complexity Low_complexity 1 22 0 9475 107 4 0 chrX 72465793 72467165 -104506975 - L1P3 LINE L1 -4944 1517 141 24965 111 17 4 chrX 72467169 72471255 -104502885 + L1P LINE L1 1205 5343 -803 * 29429 32 2 0 chrX 72471252 72475741 -104498399 + L1PA3 LINE L1 1660 6155 0 436 328 62 43 chrX 72475794 72476440 -104497700 + MER57B-int LTR ERV1 3225 3882 -2919 1825 229 26 69 chrX 72476528 72477179 -104496961 + MER57B-int LTR ERV1 2145 5809 -1728 1084 273 21 43 chrX 72477218 72477840 -104496300 + MER57B-int LTR ERV1 2401 6176 -1361 501 278 55 19 chrX 72479363 72479606 -104494534 + MER57B-int LTR ERV1 6803 6991 -546 382 110 110 44 chrX 72479661 72479752 -104494388 + MER57B-int LTR ERV1 7441 7537 0 2447 137 60 14 chrX 72479752 72480167 -104493973 + MER57B LTR ERV1 1 434 0 357 194 0 0 chrX 72480167 72480234 -104493906 - MSTB1 LTR MaLR -206 226 160 2165 156 34 29 chrX 72480238 72480655 -104493485 - MSTB1 LTR MaLR -13 419 1 1612 73 0 14 chrX 72481828 72482046 -104492094 - L1PA7 LINE L1 0 6154 5940 244 233 33 11 chrX 72482226 72482316 -104491824 + L1ME LINE L1 50 141 -5929 458 346 104 54 chrX 72482441 72482739 -104491401 + L1ME LINE L1 237 549 -5521 705 282 31 12 chrX 72482800 72483059 -104491081 - L1ME1 LINE L1 -58 6108 5845 546 174 0 0 chrX 72483117 72483226 -104490914 + (TA)n Simple_repeat Simple_repeat 1 109 0 688 196 54 25 chrX 72483256 72483460 -104490680 + L1M4 LINE L1 4448 4657 -1489 687 266 0 5 chrX 72483455 72483639 -104490501 + L1MEc LINE L1 30 212 -6184 * 267 272 87 23 chrX 72483743 72483916 -104490224 + L1MEc LINE L1 1104 1287 -5109 180 158 0 0 chrX 72484061 72484099 -104490041 + (TTA)n Simple_repeat Simple_repeat 2 39 0 276 286 33 40 chrX 72484319 72484648 -104489492 + L1MEc LINE L1 2752 3078 -3137 41 36 0 0 chrX 72484652 72484707 -104489433 + AT_rich Low_complexity Low_complexity 1 55 0 28 0 0 0 chrX 72484729 72484757 -104489383 + AT_rich Low_complexity Low_complexity 1 28 0 2912 217 18 60 chrX 72484785 72485425 -104488715 + L1PA13 LINE L1 1 610 -6177 272 22 0 87 chrX 72485425 72485471 -104488669 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2912 217 18 60 chrX 72485471 72485541 -104488599 + L1PA13 LINE L1 610 681 -6106 * 5348 237 41 8 chrX 72485521 72487198 -104486942 + L1PA13 LINE L1 940 2682 -4115 216 0 0 0 chrX 72487308 72487332 -104486808 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 803 177 0 0 chrX 72487663 72487793 -104486347 + FLAM_C SINE Alu 1 130 -3 267 276 20 10 chrX 72487815 72487913 -104486227 - MER31-int LTR ERV1 -3127 1809 1711 388 232 14 36 chrX 72488080 72488218 -104485922 - MER31-int LTR ERV1 -3490 1446 1312 8285 182 12 5 chrX 72488225 72489925 -104484215 - L1P LINE L1 -1187 4959 3249 3543 176 6 13 chrX 72489904 72490603 -104483537 - L1PA13 LINE L1 -4699 2088 1395 * 730 314 98 3 chrX 72490619 72491157 -104482983 - L1PA13 LINE L1 -5543 1244 622 325 167 0 39 chrX 72491235 72491313 -104482827 - MER31-int LTR ERV1 -3649 1287 1213 282 152 51 185 chrX 72493190 72493328 -104480812 - MER31-int LTR ERV1 -3733 1203 1093 1585 197 27 0 chrX 72493328 72493627 -104480513 + AluJb SINE Alu 1 307 -5 282 152 51 185 chrX 72493627 72493666 -104480474 - MER31-int LTR ERV1 -3843 1093 1050 1831 164 0 7 chrX 72494032 72494342 -104479798 + AluJb SINE Alu 1 308 -4 1116 195 111 59 chrX 72494486 72494891 -104479249 - LTR37A LTR ERV1 0 426 1 488 324 84 22 chrX 72494891 72495116 -104479024 + MIR SINE MIR 22 260 -2 397 353 45 10 chrX 72495202 72495403 -104478737 + MIR SINE MIR 2 209 -53 5761 166 14 1 chrX 72495407 72497080 -104477060 - L1PB1 LINE L1 -17 6134 4444 868 109 0 0 chrX 72497084 72497212 -104476928 + L1P LINE L1 4923 5050 -1096 7387 162 30 9 chrX 72497244 72499848 -104474292 + L1MA1 LINE L1 3640 6301 -1 29 47 0 0 chrX 72499848 72499891 -104474249 + AT_rich Low_complexity Low_complexity 1 43 0 1236 263 11 3 chrX 72499892 72500257 -104473883 + L1 LINE L1 3290 3657 -2489 771 201 10 113 chrX 72500257 72500415 -104473725 - L1MA10 LINE L1 0 6334 6218 2109 126 0 28 chrX 72500415 72500732 -104473408 - AluSg SINE Alu -2 308 1 771 201 10 113 chrX 72500732 72500866 -104473274 - L1MA10 LINE L1 -116 6218 6072 277 242 77 0 chrX 72501817 72501908 -104472232 + L1ME4a LINE L1 5966 6063 -58 22 0 0 0 chrX 72502320 72502342 -104471798 + AT_rich Low_complexity Low_complexity 1 22 0 2182 159 56 29 chrX 72502504 72502912 -104471228 - MSTA LTR MaLR -9 419 1 425 251 150 44 chrX 72503020 72503247 -104470893 - MIR SINE MIR -11 251 1 709 174 60 167 chrX 72503668 72503950 -104470190 - L2 LINE L2 -1294 2020 1769 7138 205 44 29 chrX 72503973 72506669 -104467471 - L1MA9 LINE L1 -39 7294 4552 3651 237 27 15 chrX 72506671 72507991 -104466149 - L1MA9 LINE L1 -4502 2666 1301 * 3822 234 84 40 chrX 72507966 72509788 -104464352 + L1PBa LINE L1 429 2376 -4487 * 29214 118 10 78 chrX 72509786 72514325 -104459815 - L1PA7 LINE L1 0 6154 1308 1008 76 0 0 chrX 72514325 72514481 -104459659 + L1PA3 LINE L1 6012 6170 0 29214 118 10 78 chrX 72514481 72515065 -104459075 - L1PA7 LINE L1 -4846 1308 686 2485 46 0 0 chrX 72515065 72515372 -104458768 - L1PA4 LINE L1 -3 6152 5846 29214 118 10 78 chrX 72515372 72516842 -104457298 - L1PA7 LINE L1 -5468 686 12 2165 103 17 11 chrX 72516854 72517213 -104456927 + L1PBa LINE L1 2364 2724 -4139 2614 85 3 3 chrX 72517226 72517578 -104456562 + L1P LINE L1 3 354 -5792 1022 97 0 0 chrX 72517579 72517724 -104456416 + L1PA6 LINE L1 6009 6153 -1 1750 179 3 3 chrX 72517744 72518040 -104456100 - AluSg SINE Alu -14 296 1 338 305 70 33 chrX 72518065 72518215 -104455925 - MIR SINE MIR -65 143 5 220 161 11 0 chrX 72518538 72518586 -104455554 + MIR SINE MIR 73 122 -86 278 215 89 13 chrX 72518621 72518700 -104455440 + L1M4 LINE L1 5386 5470 -714 1999 176 45 33 chrX 72518701 72519122 -104455018 + MER65C LTR ERV1 1 426 -35 7920 205 28 60 chrX 72519135 72521793 -104452347 - L1PA12 LINE L1 -2415 5169 2619 528 141 0 0 chrX 72521793 72521871 -104452269 - U6 snRNA snRNA -1 106 29 1380 211 43 23 chrX 72521968 72522267 -104451873 + AluJo SINE Alu 2 306 -6 2891 123 29 7 chrX 72522472 72522927 -104451213 - MER4C LTR ERV1 0 465 1 6614 176 30 61 chrX 72522934 72524580 -104449560 - MER4C-int LTR ERV1 -2 6596 5002 1098 137 31 0 chrX 72524582 72524743 -104449397 + AluSx SINE Alu 3 168 -144 1129 193 0 10 chrX 72524743 72524945 -104449195 - AluSg SINE Alu -110 200 1 873 138 28 6 chrX 72524951 72525132 -104449008 - MER4B-int LTR ERV1 -4881 1877 1693 665 94 0 19 chrX 72525134 72525240 -104448900 + L1PB1 LINE L1 6048 6151 0 603 216 8 0 chrX 72525276 72525401 -104448739 - L1 LINE L1 -3806 2340 2215 477 90 15 0 chrX 72525408 72525475 -104448665 - Alu SINE Alu -15 295 228 2284 258 75 86 chrX 72525481 72526511 -104447629 - L1PBa LINE L1 -3941 2922 1905 2620 109 3 8 chrX 72526513 72526879 -104447261 - THE1B LTR MaLR 0 364 1 9284 124 47 37 chrX 72526879 72528443 -104445697 - THE1B-int LTR MaLR 0 1580 1 1998 150 30 35 chrX 72528443 72528809 -104445331 - THE1B LTR MaLR 0 364 1 710 319 43 0 chrX 72528810 72529045 -104445095 + L1P LINE L1 2511 2755 -3391 1210 163 67 0 chrX 72529045 72529254 -104444886 + L1PA15-16 LINE L1 707 929 -5920 1631 224 50 2 chrX 72529372 72529793 -104444347 + L1PA15-16 LINE L1 2743 3187 -3662 4131 133 8 0 chrX 72529793 72530427 -104443713 + L1PA15 LINE L1 5523 6161 -4 1631 224 50 2 chrX 72530427 72530470 -104443670 + L1PA15-16 LINE L1 3187 3226 -3623 2186 209 22 14 chrX 72530833 72531249 -104442891 + MLT1A2-int LTR MaLR 1317 1735 0 1576 209 53 11 chrX 72531249 72531608 -104442532 + MLT1A2 LTR MaLR 1 374 0 332 306 89 44 chrX 72531608 72531892 -104442248 + L1 LINE L1 4527 4823 -1323 1466 286 83 7 chrX 72531929 72532376 -104441764 - LTR16C LTR ERVL 0 491 11 454 369 75 17 chrX 72532401 72532865 -104441275 + L1 LINE L1 4882 5372 -774 2948 215 44 58 chrX 72532890 72534084 -104440056 + L1MC5 LINE L1 6476 7665 -296 * 42972 52 4 0 chrX 72534076 72540200 -104433940 - L1PA5 LINE L1 -6 6148 1 633 173 0 0 chrX 72540232 72540336 -104433804 - U6 snRNA snRNA -3 104 1 614 93 52 0 chrX 72540338 72540435 -104433705 + L1MA1 LINE L1 6101 6202 -100 304 213 27 0 chrX 72540510 72540585 -104433555 - MER31-int LTR ERV1 -2358 2578 2502 302 160 0 0 chrX 72540775 72540825 -104433315 + Charlie1 DNA MER1_type 56 105 -2656 * 397 228 13 44 chrX 72540821 72540975 -104433165 + Charlie1 DNA MER1_type 2573 2721 -40 1187 227 72 41 chrX 72540975 72541266 -104432874 - MLT2B3 LTR ERVL 0 554 255 4579 131 21 5 chrX 72741272 72742431 -104231709 + L1PA12 LINE L1 4957 6168 0 10392 170 33 2 chrX 72742458 72745502 -104228638 + L1MA1 LINE L1 3166 6302 0 3483 175 27 39 chrX 72745509 72746245 -104227895 - L1MB1 LINE L1 -60 6108 5382 255 61 0 0 chrX 72746245 72746278 -104227862 + (TTA)n Simple_repeat Simple_repeat 3 35 0 6972 53 0 3 chrX 72746278 72747351 -104226789 - L1PA5 LINE L1 -18 6136 5063 8481 45 18 1 chrX 72747351 72748423 -104225717 + L1PA5 LINE L1 3981 5070 -1076 16326 160 12 95 chrX 72748424 72752410 -104221730 - L1P LINE L1 -757 5389 1734 8543 104 4 18 chrX 72752414 72754490 -104219650 + L1PA7 LINE L1 4076 6150 -4 282 163 0 0 chrX 72754490 72754539 -104219601 - L1MB1 LINE L1 -2399 3747 3699 2144 195 28 3 chrX 72754540 72754930 -104219210 - MER47B DNA MER2_type -17 401 2 824 178 35 29 chrX 72754934 72755185 -104218955 - L1MB1 LINE L1 -2456 3690 3452 678 151 34 0 chrX 72755185 72755331 -104218809 + GA-rich Low_complexity Low_complexity 3 153 0 721 184 0 22 chrX 72755438 72755574 -104218566 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chrX 72755587 72755607 -104218533 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 4973 133 26 65 chrX 72756317 72757297 -104216843 - L1MA4A LINE L1 -45 6258 5317 507 211 64 0 chrX 72757306 72757415 -104216725 - Charlie1 DNA MER1_type -1032 1729 1614 437 0 19 0 chrX 72757549 72757602 -104216538 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6462 40 3 7 chrX 72757602 72758361 -104215779 - SVA Other Other -23 1363 608 13168 208 41 18 chrX 72758361 72761484 -104212656 - L1 LINE L1 -812 5334 2068 1890 158 20 7 chrX 72761484 72761782 -104212358 + AluSq SINE Alu 1 302 -11 13168 208 41 18 chrX 72761782 72762852 -104211288 - L1 LINE L1 -4078 2068 1025 35358 41 2 1 chrX 72762864 72768029 -104206111 - L1PA3 LINE L1 0 6155 986 5581 68 163 9 chrX 72768028 72768842 -104205298 + L1PA3 LINE L1 78 1017 -5129 * 5502 249 37 13 chrX 72768837 72770128 -104204012 - L1 LINE L1 -5107 1742 421 * 344 222 74 0 chrX 72770126 72770207 -104203933 - L1 LINE L1 -6760 89 3 * 1377 210 3 39 chrX 72770310 72770619 -104203521 - AluJo SINE Alu -14 298 1 818 168 25 6 chrX 72772017 72772178 -104201962 - L1M2 LINE L1 -777 5535 5372 547 205 13 20 chrX 72772179 72772330 -104201810 + L1MA7 LINE L1 6140 6289 -2 256 328 0 0 chrX 72772415 72772534 -104201606 + L1M4b LINE L1 91 209 -6650 1357 243 76 47 chrX 72772899 72773766 -104200374 + L1M4b LINE L1 1260 2171 -4788 763 239 36 9 chrX 72773767 72774017 -104200123 + L1M4b LINE L1 2921 3148 -3809 21268 147 17 92 chrX 72774042 72775202 -104198938 + L1PA15 LINE L1 849 2094 -4071 249 33 0 0 chrX 72775202 72775232 -104198908 + (CA)n Simple_repeat Simple_repeat 1 30 0 21268 147 17 92 chrX 72775232 72779425 -104194715 + L1PA15 LINE L1 2094 5788 -377 570 67 86 2 chrX 72779428 72779899 -104194241 + (TA)n Simple_repeat Simple_repeat 1 510 0 23 54 0 0 chrX 72779902 72779939 -104194201 + AT_rich Low_complexity Low_complexity 1 37 0 556 59 88 10 chrX 72779939 72780249 -104193891 + (TA)n Simple_repeat Simple_repeat 1 334 0 2229 164 10 21 chrX 72780250 72780639 -104193501 + L1PA15 LINE L1 5776 6160 -5 1285 229 18 4 chrX 72780753 72781032 -104193108 + AluJo SINE Alu 1 283 -29 293 286 71 58 chrX 72781181 72781335 -104192805 - MIR SINE MIR -54 208 53 411 250 42 0 chrX 72781392 72781488 -104192652 + LTR16B LTR ERVL 1 100 -364 6174 97 11 0 chrX 72781536 72783006 -104191134 - L1PA8A LINE L1 -31 6100 4621 6942 196 105 2 chrX 72783035 72784543 -104189597 - L1PB1 LINE L1 -8 6859 5508 2137 108 6 32 chrX 72784543 72784859 -104189281 - AluSg SINE Alu -2 308 1 6942 196 105 2 chrX 72784859 72786078 -104188062 - L1PB1 LINE L1 -1359 5508 3867 * 31699 46 2 1 chrX 72786065 72792210 -104181930 - L1PA3 LINE L1 -3 6152 2 5370 209 82 5 chrX 72792214 72795688 -104178452 - L1PB1 LINE L1 -2972 3890 5 416 102 45 45 chrX 72795702 72795790 -104178350 - THE1B LTR MaLR -83 281 194 404 351 27 7 chrX 72795795 72795943 -104178197 + LTR16B LTR ERVL 87 237 -227 241 286 14 0 chrX 72796055 72796125 -104178015 + LTR16B LTR ERVL 394 464 0 631 289 182 18 chrX 72796469 72796919 -104177221 + L2 LINE L2 2134 2657 -657 284 44 44 0 chrX 72797036 72797081 -104177059 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1486 192 7 0 chrX 72797086 72797367 -104176773 - L1PA16 LINE L1 -9 6157 5875 210 37 0 0 chrX 72797432 72797459 -104176681 + (TG)n Simple_repeat Simple_repeat 2 28 0 294 317 59 0 chrX 72797468 72797569 -104176571 + L2 LINE L2 3156 3262 -10 888 148 15 89 chrX 72798086 72798288 -104175852 + MER5A DNA MER1_type 3 189 0 386 241 12 0 chrX 72798357 72798440 -104175700 + MER96 DNA MER1_type? 1 84 -91 243 240 0 0 chrX 72798675 72798725 -104175415 - MIR3 SINE MIR -8 200 151 280 233 101 0 chrX 72799286 72799415 -104174725 + L1MC4a LINE L1 5747 5888 -1920 40364 58 2 0 chrX 72801238 72807377 -104166763 - L1PA4 LINE L1 -5 6150 1 512 212 58 116 chrX 72807494 72807735 -104166405 - MIR SINE MIR -3 259 33 507 293 88 17 chrX 72807782 72808257 -104165883 + L1ME4a LINE L1 5610 6118 -3 3030 123 53 4 chrX 72808633 72809120 -104165020 - MER9 LTR ERVK 0 511 1 241 289 123 9 chrX 72809182 72809296 -104164844 - MIR SINE MIR -82 180 54 376 282 90 13 chrX 72809471 72809627 -104164513 + L2 LINE L2 133 300 -3014 2484 204 33 45 chrX 72809681 72810730 -104163410 - L1MB4 LINE L1 0 6678 5677 725 154 160 41 chrX 72810730 72810899 -104163241 - MSTA LTR MaLR 0 428 240 1829 229 9 18 chrX 72810901 72811446 -104162694 - L1MB4 LINE L1 -1082 5562 5023 392 271 118 53 chrX 72811452 72811925 -104162215 - L1MB4 LINE L1 -5238 1304 802 325 320 90 30 chrX 72812202 72812436 -104161704 - L1MB4 LINE L1 -6293 249 2 1422 340 31 25 chrX 72812456 72813206 -104160934 + L2 LINE L2 324 1077 -2237 30 0 0 0 chrX 72814090 72814120 -104160020 + AT_rich Low_complexity Low_complexity 1 30 0 25 20 0 59 chrX 72815342 72815393 -104158747 + AT_rich Low_complexity Low_complexity 1 48 0 5815 93 24 9 chrX 72815393 72815564 -104158576 + L1PA11 LINE L1 5272 5439 -735 1717 168 64 17 chrX 72815564 72815922 -104158218 + THE1C LTR MaLR 1 375 0 5815 93 24 9 chrX 72815922 72816636 -104157504 + L1PA11 LINE L1 5439 6170 -4 26 64 0 0 chrX 72816658 72816705 -104157435 + AT_rich Low_complexity Low_complexity 1 47 0 4897 148 20 3 chrX 72817133 72818037 -104156103 + L1PA16 LINE L1 5232 6150 -16 447 349 0 17 chrX 72818214 72818389 -104155751 + L1PA13 LINE L1 788 959 -6615 11052 241 29 15 chrX 72818436 72818688 -104155452 + L1PA13 LINE L1 2179 2426 -5158 1990 70 52 17 chrX 72818688 72818817 -104155323 + AluY SINE Alu 1 124 -187 189 0 0 0 chrX 72818817 72818838 -104155302 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1990 70 52 17 chrX 72818838 72818995 -104155145 + AluY SINE Alu 124 297 -14 11052 241 29 15 chrX 72818995 72822929 -104151211 + L1PA13 LINE L1 2426 6447 -1137 27 87 0 0 chrX 72822956 72823025 -104151115 + AT_rich Low_complexity Low_complexity 1 69 0 15990 195 24 11 chrX 72823067 72823091 -104151049 - L1PA12 LINE L1 -784 6800 6778 20440 37 0 0 chrX 72823091 72826355 -104147785 - L1PA3 LINE L1 -3 6152 2890 15990 195 24 11 chrX 72826355 72829522 -104144618 - L1PA12 LINE L1 -806 6778 3549 1619 174 17 24 chrX 72829522 72829820 -104144320 + AluJb SINE Alu 1 296 -16 15990 195 24 11 chrX 72829820 72832042 -104142098 - L1PA12 LINE L1 -4035 3549 1357 4378 238 69 29 chrX 72832040 72833837 -104140303 - L1PBb LINE L1 -3283 2920 973 * 2267 83 0 0 chrX 72833837 72834139 -104140001 - AluSc SINE Alu 0 302 1 4378 238 69 29 chrX 72834139 72834422 -104139718 - L1PBb LINE L1 -5230 973 703 274 378 25 25 chrX 72834845 72835049 -104139091 - L1PBb LINE L1 -5833 371 168 2121 179 53 8 chrX 72836089 72836485 -104137655 - MSTB1 LTR MaLR -16 416 3 321 260 40 60 chrX 72836942 72837142 -104136998 - L1M4b LINE L1 -6653 206 11 13137 192 109 12 chrX 72837281 72837954 -104136186 - L1PA13 LINE L1 -1 6813 6207 210 37 0 0 chrX 72837954 72837981 -104136159 + (TTG)n Simple_repeat Simple_repeat 1 27 0 13137 192 109 12 chrX 72837981 72843412 -104130728 - L1PA13 LINE L1 -607 6207 3 1693 158 67 0 chrX 72843615 72843900 -104130240 + AluJb SINE Alu 1 304 -8 383 296 88 31 chrX 72843931 72844090 -104130050 - MER5A DNA MER1_type -6 183 16 643 328 134 22 chrX 72844341 72844698 -104129442 + MLT1K LTR MaLR 116 512 -76 288 77 0 0 chrX 72844825 72844864 -104129276 + (CA)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chrX 72844938 72844973 -104129167 + AT_rich Low_complexity Low_complexity 1 35 0 2620 225 16 5 chrX 72845661 72846278 -104127862 + L1PA15 LINE L1 3983 4606 -1540 3349 146 67 19 chrX 72846278 72846862 -104127278 + LTR9 LTR ERV1 1 612 0 27319 155 75 50 chrX 72846883 72853291 -104120849 + HUERS-P3b LTR ERV1 22 6591 -827 1254 157 31 18 chrX 72853296 72853519 -104120621 + HUERS-P3b LTR ERV1 6758 6983 -1936 845 171 17 22 chrX 72853509 72853717 -104120423 + HUERS-P3 LTR ERV1 2388 2565 -2450 * 1213 159 5 0 chrX 72853849 72854044 -104120096 + HUERS-P3 LTR ERV1 8720 8915 -4 3408 153 65 12 chrX 72854047 72854628 -104119512 + LTR9 LTR ERV1 1 612 0 3113 205 6 20 chrX 72854628 72855335 -104118805 + L1PA15 LINE L1 4603 5299 -847 4855 186 59 8 chrX 72855351 72856403 -104117737 + L1PB1 LINE L1 6 1154 -5709 15093 189 12 7 chrX 72856410 72860157 -104113983 + L1PB1 LINE L1 1311 5138 -1729 282 29 0 0 chrX 72860157 72860192 -104113948 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 15093 189 12 7 chrX 72860192 72861930 -104112210 + L1PB1 LINE L1 5138 6867 0 5205 140 22 2 chrX 72861933 72862783 -104111357 + L1PA15 LINE L1 5299 6165 0 21 0 0 0 chrX 72862997 72863018 -104111122 + AT_rich Low_complexity Low_complexity 1 21 0 780 271 104 5 chrX 72864327 72864548 -104109592 + MIR SINE MIR 18 260 -2 35 41 0 0 chrX 72865201 72865250 -104108890 + AT_rich Low_complexity Low_complexity 1 49 0 957 293 127 67 chrX 72865717 72865892 -104108248 - L2 LINE L2 -86 3186 3023 228 35 0 0 chrX 72865892 72865921 -104108219 + (TTG)n Simple_repeat Simple_repeat 2 30 0 957 293 127 67 chrX 72865921 72865946 -104108194 - L2 LINE L2 -249 3023 3001 1699 185 3 20 chrX 72865946 72866238 -104107902 - AluJo SINE Alu -25 287 1 957 293 127 67 chrX 72866238 72867021 -104107119 - L2 LINE L2 -271 3001 2154 2479 132 2 19 chrX 72867439 72867855 -104106285 + L1MA7 LINE L1 5745 6153 -138 1787 119 14 31 chrX 72867881 72868174 -104105966 + THE1C LTR MaLR 88 375 0 615 156 44 15 chrX 72868174 72868309 -104105831 + L1MA7 LINE L1 6149 6287 -4 325 236 154 66 chrX 72868318 72868500 -104105640 - L1ME4a LINE L1 -73 6048 5851 276 299 13 0 chrX 72869371 72869448 -104104692 + CT-rich Low_complexity Low_complexity 2 79 0 284 120 20 0 chrX 72869595 72869645 -104104495 + GA-rich Low_complexity Low_complexity 2 52 0 505 283 90 34 chrX 72870046 72870279 -104103861 - MIR SINE MIR -6 256 11 21 57 0 0 chrX 72870535 72870570 -104103570 + AT_rich Low_complexity Low_complexity 1 35 0 1134 251 60 60 chrX 72870680 72871242 -104102898 + L1MC4a LINE L1 3813 4374 -1772 341 283 43 70 chrX 72871289 72871476 -104102664 - MLT1J2 LTR MaLR -3 447 266 21 71 0 0 chrX 72871631 72871673 -104102467 + AT_rich Low_complexity Low_complexity 1 42 0 590 308 52 39 chrX 72871716 72872102 -104102038 + L1MC4a LINE L1 4581 4971 -1175 2220 152 39 31 chrX 72872172 72872716 -104101424 - MLT2A2 LTR ERVL 0 554 1 356 335 86 13 chrX 72872727 72872960 -104101180 + L1MC4a LINE L1 5047 5296 -850 261 300 33 22 chrX 72873041 72873131 -104101009 + L1MC4a LINE L1 5413 5503 -618 653 281 85 16 chrX 72873138 72873455 -104100685 + L1MC4a LINE L1 5557 5895 -1913 309 26 0 0 chrX 72873519 72873557 -104100583 + (TG)n Simple_repeat Simple_repeat 2 39 0 367 313 100 8 chrX 72873632 72873881 -104100259 - L1ME4a LINE L1 -11 6110 5839 220 291 127 9 chrX 72873900 72874010 -104100130 - MIR SINE MIR 0 262 140 239 306 0 16 chrX 72874831 72874893 -104099247 + MIR SINE MIR 17 77 -131 567 291 17 23 chrX 72874916 72875088 -104099052 - MIR SINE MIR -14 248 78 8778 209 36 23 chrX 72875092 72876527 -104097613 + L1M2b LINE L1 787 2136 -4713 3049 6 3 0 chrX 72876527 72876894 -104097246 + L1PA3 LINE L1 5795 6162 0 8778 209 36 23 chrX 72876894 72877519 -104096621 + L1M2b LINE L1 2136 2751 -4098 1039 175 26 13 chrX 72877496 72877520 -104096620 + L1M2 LINE L1 1434 1456 -5393 * 675 46 0 0 chrX 72877520 72877607 -104096533 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 1039 175 26 13 chrX 72877607 72877811 -104096329 + L1M2 LINE L1 1456 1665 -5184 912 153 69 9 chrX 72877813 72878029 -104096111 - L1M2 LINE L1 -4956 1893 1665 2831 212 33 52 chrX 72878041 72878726 -104095414 + L1MEc LINE L1 2194 2822 -3393 1462 200 0 32 chrX 72878726 72879011 -104095129 + AluJo SINE Alu 1 276 -36 2831 212 33 52 chrX 72879011 72879202 -104094938 + L1MEc LINE L1 2822 3015 -3200 1089 198 10 0 chrX 72879205 72879397 -104094743 + AluJo SINE Alu 1 194 -118 339 113 0 0 chrX 72879397 72879450 -104094690 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 803 217 4 17 chrX 72879450 72879690 -104094450 + L1MEc LINE L1 3006 3242 -2973 267 226 36 12 chrX 72879691 72879775 -104094365 + (TA)n Simple_repeat Simple_repeat 2 87 0 338 262 48 0 chrX 72879775 72879859 -104094281 + L1MC4 LINE L1 6614 6701 -1341 7039 171 80 16 chrX 72879877 72882641 -104091499 + L1PA7 LINE L1 3199 6150 -4 4156 106 49 0 chrX 72882646 72883278 -104090862 + L1MA2 LINE L1 5480 6142 -162 1403 96 0 0 chrX 72884567 72884766 -104089374 + L1MA2 LINE L1 6102 6300 -4 2326 181 28 51 chrX 72884770 72885335 -104088805 + L1 LINE L1 4369 4920 -1226 234 284 98 10 chrX 72886502 72886604 -104087536 - L2 LINE L2 -37 3276 3166 2150 147 3 12 chrX 72886782 72887122 -104087018 + MER1B DNA MER1_type 1 337 0 314 194 306 81 chrX 72887495 72887655 -104086485 + MIR SINE MIR 57 252 -10 1004 180 0 0 chrX 72888220 72888392 -104085748 + FRAM SINE Alu 1 165 -11 226 158 0 0 chrX 72888472 72888510 -104085630 - L1MA9 LINE L1 0 6312 6275 4132 41 0 12 chrX 72888513 72889027 -104085113 + L1PA7 LINE L1 5647 6154 0 371 169 79 0 chrX 72889103 72889192 -104084948 - L1MA9 LINE L1 -3 6309 6214 1061 102 23 28 chrX 72889192 72889368 -104084772 + L1MA9 LINE L1 6066 6240 -72 22 0 0 0 chrX 72889374 72889396 -104084744 + AT_rich Low_complexity Low_complexity 1 22 0 2193 104 0 50 chrX 72890336 72890654 -104083486 + AluSx SINE Alu 3 304 -8 748 244 83 49 chrX 72890666 72891032 -104083108 - L1MC5 LINE L1 -393 7415 7260 826 248 72 44 chrX 72891033 72891442 -104082698 - L1MC4 LINE L1 -733 7228 6819 454 122 14 0 chrX 72891501 72891575 -104082565 - L1MA10 LINE L1 -20 6314 6240 1253 146 0 2 chrX 72891781 72892154 -104081986 - MSTA LTR MaLR 0 428 1 572 220 73 11 chrX 72892356 72892533 -104081607 - L1MC4 LINE L1 -1872 5936 5749 549 261 124 33 chrX 72892869 72893168 -104080972 - L1MC4a LINE L1 -1902 5906 5581 1898 180 86 50 chrX 72893188 72893539 -104080601 + L1PA7 LINE L1 5660 6034 -120 234 0 0 0 chrX 72893539 72893565 -104080575 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 1898 180 86 50 chrX 72893565 72893691 -104080449 + L1PA7 LINE L1 6034 6154 0 685 139 61 0 chrX 72893689 72893804 -104080336 + L1PA16 LINE L1 6024 6145 -21 * 418 276 70 35 chrX 72893865 72894086 -104080054 - L1MC4a LINE L1 -526 5595 5370 21 89 0 0 chrX 72894820 72894876 -104079264 + AT_rich Low_complexity Low_complexity 1 56 0 1961 119 4 4 chrX 72897438 72897715 -104076425 - AluSx SINE Alu -15 297 21 218 358 119 9 chrX 72898139 72898248 -104075892 - MIR SINE MIR -65 143 23 1331 148 144 42 chrX 72899510 72899848 -104074292 + THE1C LTR MaLR 1 424 -2 9652 113 30 36 chrX 72899853 72901440 -104072700 + THE1C-int LTR MaLR 4 1580 0 1558 152 75 39 chrX 72901440 72901802 -104072338 + THE1C LTR MaLR 1 375 0 366 323 38 8 chrX 72901941 72902074 -104072066 + MIR SINE MIR 5 141 -121 603 153 187 0 chrX 72902253 72902362 -104071778 - L1MA9 LINE L1 -22 6290 6203 318 26 0 0 chrX 72902362 72902401 -104071739 + (TG)n Simple_repeat Simple_repeat 2 40 0 603 153 187 0 chrX 72902401 72902441 -104071699 - L1MA9 LINE L1 -109 6203 6113 1334 104 196 0 chrX 72902443 72902673 -104071467 + L1MA9 LINE L1 5820 6094 -218 513 357 86 19 chrX 72902879 72903240 -104070900 + L2 LINE L2 2469 2853 -461 210 354 173 16 chrX 72903507 72903634 -104070506 + L2 LINE L2 3105 3251 -21 28 48 0 0 chrX 72903635 72903677 -104070463 + AT_rich Low_complexity Low_complexity 1 42 0 837 316 4 12 chrX 72904370 72904620 -104069520 + MIR SINE MIR 3 250 -12 2298 77 23 0 chrX 72905373 72905672 -104068468 + AluY SINE Alu 1 306 -5 1124 165 60 32 chrX 72907913 72908162 -104065978 + L1MB8 LINE L1 5923 6178 0 241 293 53 27 chrX 72908317 72908392 -104065748 - L2 LINE L2 -28 3244 3168 259 286 0 0 chrX 72908410 72908466 -104065674 + L2 LINE L2 3214 3269 -3 673 219 83 0 chrX 72910128 72910297 -104063843 + L1MA3 LINE L1 4217 4399 -1747 1161 147 29 4 chrX 72910298 72910543 -104063597 + L1MA3 LINE L1 5222 5471 -709 29 47 0 0 chrX 72911521 72911564 -104062576 + AT_rich Low_complexity Low_complexity 1 43 0 2596 109 32 18 chrX 72911649 72912088 -104062052 + L1MA3 LINE L1 5861 6305 0 2147 115 0 0 chrX 72912540 72912835 -104061305 + AluSx SINE Alu 1 295 -17 282 188 263 23 chrX 72912931 72913064 -104061076 - L1ME4a LINE L1 -17 6104 5940 544 301 80 58 chrX 72915755 72915981 -104058159 - MIR SINE MIR -31 231 1 537 202 22 34 chrX 72916138 72916316 -104057824 + Charlie2 DNA MER1_type 2258 2433 -429 784 185 43 11 chrX 72916316 72916500 -104057640 + Charlie2 DNA MER1_type 2611 2800 -62 21 36 0 0 chrX 72916817 72916845 -104057295 + AT_rich Low_complexity Low_complexity 1 28 0 385 250 29 0 chrX 72917252 72917356 -104056784 + MIR3 SINE MIR 91 197 -11 622 257 29 0 chrX 72918719 72918855 -104055285 - MIR SINE MIR -75 187 48 24 0 0 0 chrX 72919317 72919341 -104054799 + AT_rich Low_complexity Low_complexity 1 24 0 31 26 0 0 chrX 72920276 72920314 -104053826 + AT_rich Low_complexity Low_complexity 1 38 0 2069 132 56 31 chrX 72921496 72921851 -104052289 + THE1B LTR MaLR 1 364 0 5640 90 3 1 chrX 72921851 72922616 -104051524 + THE1B-int LTR MaLR 1 766 -814 304 256 115 51 chrX 72922641 72922797 -104051343 + L1ME4a LINE L1 5414 5579 -542 * 1601 234 56 0 chrX 72922796 72923172 -104050968 + L1MDa LINE L1 16 412 -6128 231 253 210 16 chrX 72923248 72923434 -104050706 + L1ME4a LINE L1 5881 6102 -19 5094 138 28 1 chrX 72923504 72924549 -104049591 + L1PA16 LINE L1 5089 6157 -9 2664 90 3 0 chrX 72924727 72925081 -104049059 + THE1A LTR MaLR 1 355 0 11326 90 17 3 chrX 72925081 72926640 -104047500 + THE1A-int LTR MaLR 1 1580 0 2694 87 0 3 chrX 72926640 72926996 -104047144 + THE1A LTR MaLR 1 355 0 193 362 64 32 chrX 72927375 72927469 -104046671 + L2 LINE L2 3137 3233 -39 1582 159 23 104 chrX 72927809 72928204 -104045936 + MLT1A1 LTR MaLR 1 363 -2 22 56 0 0 chrX 72928820 72928856 -104045284 + AT_rich Low_complexity Low_complexity 1 36 0 1116 161 118 0 chrX 72928893 72929104 -104045036 + MER46A DNA MER2_type 1 236 0 2057 145 0 25 chrX 72929469 72929786 -104044354 - AluSx SINE Alu -3 309 1 222 191 0 0 chrX 72930482 72930529 -104043611 + A-rich Low_complexity Low_complexity 1 47 0 305 357 210 15 chrX 72930540 72931145 -104042995 - L2 LINE L2 -579 2735 2013 258 90 96 30 chrX 72931170 72931336 -104042804 + (TA)n Simple_repeat Simple_repeat 2 178 0 39 22 0 0 chrX 72931336 72931382 -104042758 + AT_rich Low_complexity Low_complexity 1 46 0 339 90 78 30 chrX 72931386 72931553 -104042587 + (TA)n Simple_repeat Simple_repeat 2 176 0 426 53 0 0 chrX 72931640 72931697 -104042443 + (TG)n Simple_repeat Simple_repeat 2 58 0 742 340 122 10 chrX 72932415 72932995 -104041145 + L2 LINE L2 1200 1844 -1470 427 314 64 32 chrX 72933084 72933272 -104040868 + L2 LINE L2 3078 3271 -1 296 125 21 0 chrX 72933971 72934019 -104040121 + Tigger4(Zombi) DNA MER2_type 1 49 -2682 324 136 15 30 chrX 72934032 72934098 -104040042 + Tigger4(Zombi) DNA MER2_type 2666 2730 -1 3022 169 72 21 chrX 72934196 72934964 -104039176 + L1MA9 LINE L1 5436 6281 -31 408 189 45 9 chrX 72937254 72937365 -104036775 + L1ME2 LINE L1 6040 6154 -10 303 318 18 63 chrX 72937405 72937628 -104036512 + L1MC4 LINE L1 7829 8041 -1 187 190 172 52 chrX 72937985 72938043 -104036097 - MER5A DNA MER1_type -25 164 100 187 343 71 29 chrX 72939071 72939211 -104034929 + L2 LINE L2 2168 2313 -1001 687 210 81 0 chrX 72939247 72939433 -104034707 - L1MA9 LINE L1 -22 6290 6090 187 353 0 0 chrX 72939584 72939652 -104034488 + L2 LINE L2 2516 2583 -731 341 333 65 94 chrX 72939699 72940176 -104033964 - L2 LINE L2 -1 3271 2809 417 248 142 0 chrX 72940303 72940444 -104033696 + L2 LINE L2 3150 3310 -3 716 283 71 4 chrX 72940727 72940953 -104033187 - MIR SINE MIR -5 257 17 207 349 47 23 chrX 72940970 72941056 -104033084 + L2 LINE L2 3167 3254 -18 2152 106 13 0 chrX 72941194 72941497 -104032643 + AluSx SINE Alu 1 307 -5 200 280 53 27 chrX 72942161 72942236 -104031904 - L2 LINE L2 -2 3311 3235 293 291 149 28 chrX 72943334 72943475 -104030665 - MIR3 SINE MIR -9 199 42 241 297 26 77 chrX 72943711 72943866 -104030274 - MER5A DNA MER1_type 0 189 43 * 359 345 7 34 chrX 72943747 72943895 -104030245 + MER5A DNA MER1_type 44 187 -2 189 0 0 0 chrX 72944079 72944100 -104030040 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 771 119 0 0 chrX 72945453 72945579 -104028561 + (TA)n Simple_repeat Simple_repeat 2 127 0 1461 283 59 51 chrX 72946104 72946867 -104027273 + L1MEd LINE L1 117 885 -5234 769 238 48 19 chrX 72946888 72947072 -104027068 + MLT1D LTR MaLR 1 178 -327 2305 93 3 7 chrX 72947072 72947382 -104026758 + AluSx SINE Alu 1 309 -3 769 238 48 19 chrX 72947382 72947398 -104026742 + MLT1D LTR MaLR 178 192 -313 2123 101 38 0 chrX 72947398 72947686 -104026454 + AluSx SINE Alu 14 312 0 354 45 0 0 chrX 72947694 72947738 -104026402 + (GAAA)n Simple_repeat Simple_repeat 1 44 0 1204 181 185 4 chrX 72947778 72948048 -104026092 + MLT1D LTR MaLR 185 503 -2 2078 307 19 50 chrX 72948147 72948951 -104025189 + L1PA13 LINE L1 1 779 -6008 1233 263 20 17 chrX 72949123 72949480 -104024660 + L1PA13 LINE L1 1344 1701 -5086 8171 152 9 9 chrX 72949482 72949548 -104024592 + L1PA13 LINE L1 3647 3712 -2451 8171 151 9 9 chrX 72949548 72951811 -104022329 + L1PA13 LINE L1 3893 6163 0 8171 152 9 9 chrX 72951811 72951828 -104022312 + L1PA13 LINE L1 3711 6163 0 4814 215 36 12 chrX 72951826 72953440 -104020700 + L1PA13 LINE L1 1707 3395 -3402 * 2554 55 0 3 chrX 72954426 72954738 -104019402 - AluY SINE Alu 0 311 1 638 290 167 9 chrX 72954916 72955137 -104019003 - MIR SINE MIR 0 262 7 323 216 68 14 chrX 72956999 72957073 -104017067 - Tigger5 DNA MER2_type -2244 79 2 753 207 155 16 chrX 72957457 72957650 -104016490 + MIR SINE MIR 30 249 -13 1252 312 56 19 chrX 72957899 72958690 -104015450 - L2 LINE L2 0 3313 2494 39 0 0 0 chrX 72961139 72961178 -104012962 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chrX 72961557 72961588 -104012552 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 72962581 72962602 -104011538 + AT_rich Low_complexity Low_complexity 1 21 0 2348 88 3 0 chrX 72962603 72962911 -104011229 + AluSx SINE Alu 1 309 -3 22 35 0 0 chrX 72963192 72963221 -104010919 + AT_rich Low_complexity Low_complexity 1 29 0 402 254 93 109 chrX 72963572 72963958 -104010182 + L2 LINE L2 2930 3309 -4 2202 111 13 0 chrX 72964162 72964460 -104009680 + AluSx SINE Alu 1 302 -10 29 0 0 0 chrX 72965476 72965505 -104008635 + AT_rich Low_complexity Low_complexity 1 29 0 933 178 35 0 chrX 72967406 72967575 -104006565 + FAM SINE Alu 1 175 0 750 242 200 19 chrX 72967640 72967855 -104006285 - MIR SINE MIR -5 257 4 2345 97 0 0 chrX 72968322 72968622 -104005518 - AluY SINE Alu -11 300 1 3802 65 11 21 chrX 72968622 72969148 -104004992 - L1PA5 LINE L1 -1 6153 5633 1982 188 56 15 chrX 72969328 72969737 -104004403 - MSTB LTR MaLR 0 426 1 1937 155 35 15 chrX 72969738 72970079 -104004061 - MER7A DNA MER2_type 0 346 1 217 226 0 38 chrX 72970330 72970383 -104003757 - L2 LINE L2 -9 3304 3254 307 311 30 61 chrX 72970719 72970883 -104003257 - MIR SINE MIR -55 207 49 2364 74 7 3 chrX 72971327 72971624 -104002516 + AluSc SINE Alu 1 298 -11 2017 123 7 23 chrX 72971897 72972205 -104001935 + AluSx SINE Alu 1 303 -9 2231 150 0 6 chrX 72973250 72973590 -104000550 + MER7A DNA MER2_type 5 340 -6 1832 133 154 24 chrX 72974289 72974666 -103999474 - MSTA LTR MaLR -2 426 1 942 183 13 57 chrX 72974782 72975011 -103999129 + MER20 DNA MER1_type 1 219 0 191 293 0 66 chrX 72975361 72975467 -103998673 + L2 LINE L2 3214 3312 -1 220 336 55 16 chrX 72975606 72975734 -103998406 - MER5A DNA MER1_type 0 189 57 203 289 0 0 chrX 72975812 72975864 -103998276 - L2 LINE L2 0 3313 3262 496 239 150 42 chrX 72975957 72976124 -103998016 + MER58A DNA MER1_type 39 223 -1 180 0 0 0 chrX 72976190 72976210 -103997930 + (CAG)n Simple_repeat Simple_repeat 1 20 0 719 229 108 25 chrX 72976246 72976486 -103997654 - MIR SINE MIR 0 262 3 21 0 0 0 chrX 72976716 72976737 -103997403 + AT_rich Low_complexity Low_complexity 1 21 0 2484 36 0 7 chrX 72977100 72977407 -103996733 - L1PA4 LINE L1 0 6155 5851 2014 18 14 57 chrX 72977407 72977686 -103996454 + L1P LINE L1 5129 5395 -751 402 202 8 34 chrX 72977941 72978060 -103996080 - MER69 DNA AcHobo -104 2422 2307 3840 126 10 15 chrX 72978973 72979575 -103994565 + L1PA15 LINE L1 5492 6090 -75 2570 138 9 41 chrX 72979575 72980017 -103994123 + MSTA LTR MaLR 1 428 0 8104 175 70 8 chrX 72980017 72981572 -103992568 + MSTA-int LTR MaLR 1 1651 0 2800 125 17 5 chrX 72981575 72981991 -103992149 + MSTA LTR MaLR 8 428 0 293 90 75 45 chrX 72981995 72982062 -103992078 + L1PA15 LINE L1 6097 6165 0 334 48 0 0 chrX 72983355 72983397 -103990743 - AluY SINE Alu -256 43 2 288 0 0 0 chrX 72984321 72984353 -103989787 + (TA)n Simple_repeat Simple_repeat 2 33 0 668 291 103 40 chrX 72984417 72984549 -103989591 + L1MEd LINE L1 561 683 -5446 198 0 0 0 chrX 72984549 72984571 -103989569 + (CA)n Simple_repeat Simple_repeat 1 22 0 668 291 103 40 chrX 72984571 72985056 -103989084 + L1MEd LINE L1 683 1261 -4868 317 106 152 15 chrX 72985056 72985122 -103989018 - MER116 DNA Mariner -4 76 2 668 291 103 40 chrX 72985122 72985464 -103988676 + L1MEd LINE L1 1261 1580 -4549 22 0 0 0 chrX 72985478 72985500 -103988640 + AT_rich Low_complexity Low_complexity 1 22 0 325 273 23 34 chrX 72985677 72985765 -103988375 - MIR SINE MIR -142 120 34 228 229 64 9 chrX 72985876 72985985 -103988155 + L1ME2 LINE L1 5218 5332 -814 7087 190 25 5 chrX 72985993 72987316 -103986824 + L1MA2 LINE L1 13 1361 -6204 6509 150 10 11 chrX 72987319 72988954 -103985186 + L1MA2 LINE L1 5607 7244 -479 2186 125 0 0 chrX 72988954 72989257 -103984883 + AluSg SINE Alu 1 303 -7 6509 150 10 11 chrX 72989257 72989737 -103984403 + L1MA2 LINE L1 7244 7723 0 814 289 107 41 chrX 72989743 72990276 -103983864 + L1ME2 LINE L1 5318 5885 -279 21 57 0 0 chrX 72991347 72991382 -103982758 + AT_rich Low_complexity Low_complexity 1 35 0 245 285 38 23 chrX 72991626 72991730 -103982410 - MIR SINE MIR -92 116 6 23 33 0 0 chrX 72991879 72991909 -103982231 + AT_rich Low_complexity Low_complexity 1 30 0 693 166 7 22 chrX 72991946 72992085 -103982055 + MER3 DNA MER1_type 73 209 0 744 124 16 8 chrX 72992597 72992726 -103981414 + LTR49 LTR ERV1 466 595 0 1645 114 23 30 chrX 72992728 72992992 -103981148 + LTR49-int LTR ERV1 1 262 -6069 830 235 87 45 chrX 72993466 72993777 -103980363 + MER46C DNA MER2_type 1 324 -14 2146 110 7 7 chrX 72994767 72995068 -103979072 - AluSx SINE Alu -11 301 1 2398 87 0 0 chrX 72995485 72995785 -103978355 + AluSc SINE Alu 4 303 -6 1346 56 13 125 chrX 72997344 72997576 -103976564 - L1PA7 LINE L1 -1 6153 5948 252 320 31 55 chrX 72998624 72998752 -103975388 + MIR SINE MIR 7 131 -131 548 228 47 53 chrX 72998754 72998925 -103975215 + MIR SINE MIR 91 260 -2 251 275 121 54 chrX 73000225 73000374 -103973766 + MIR SINE MIR 58 216 -46 2262 104 3 0 chrX 73000410 73000709 -103973431 + AluSq SINE Alu 1 300 -13 447 92 184 0 chrX 73001802 73001878 -103972262 - Tigger5 DNA MER2_type 0 2323 2234 280 214 0 18 chrX 73001884 73001940 -103972200 - Tigger5 DNA MER2_type -2267 56 2 749 297 104 42 chrX 73002733 73003117 -103971023 + MLT1L LTR MaLR 1 408 -207 4655 121 42 11 chrX 73003815 73004573 -103969567 + L1MA6 LINE L1 5514 6295 -5 21 57 0 0 chrX 73005406 73005441 -103968699 + AT_rich Low_complexity Low_complexity 1 35 0 6878 123 124 103 chrX 73005601 73007263 -103966877 - pTR5 LTR ERV1 0 2438 743 2425 91 0 0 chrX 73007360 73007669 -103966471 + AluSc SINE Alu 1 309 0 3915 212 69 22 chrX 73008263 73010152 -103963988 + L1MD2 LINE L1 4164 6146 -213 2437 61 0 7 chrX 73010682 73010978 -103963162 + AluY SINE Alu 1 294 -17 400 293 69 69 chrX 73010981 73011155 -103962985 - MIR3 SINE MIR -14 194 21 408 20 0 0 chrX 73011207 73011256 -103962884 + (CA)n Simple_repeat Simple_repeat 2 50 0 324 261 35 116 chrX 73012707 73012906 -103961234 + MIR SINE MIR 32 214 -48 208 277 169 0 chrX 73014865 73014930 -103959210 + MIR SINE MIR 182 257 -5 2400 97 0 0 chrX 73015572 73015872 -103958268 - AluSx SINE Alu -9 303 4 264 77 0 0 chrX 73016574 73016613 -103957527 + (CCA)n Simple_repeat Simple_repeat 1 39 0 685 194 8 0 chrX 73017198 73017322 -103956818 + FLAM_A SINE Alu 1 125 -8 2345 205 111 41 chrX 73018087 73018264 -103955876 + L1ME2 LINE L1 5057 5220 -944 2256 113 0 0 chrX 73018264 73018573 -103955567 + AluSq SINE Alu 4 312 -1 2345 205 111 41 chrX 73018573 73019262 -103954878 + L1ME2 LINE L1 5220 5979 -185 13834 164 16 6 chrX 73019285 73021873 -103952267 + L1PA14 LINE L1 413 3310 -4274 11825 151 18 2 chrX 73021872 73024837 -103949303 + L1PA14 LINE L1 4594 7599 0 * 288 305 32 47 chrX 73025537 73025714 -103948426 - MIR SINE MIR -56 206 30 408 183 18 122 chrX 73025924 73026088 -103948052 + MER103 DNA DNA 13 159 -7 472 274 47 32 chrX 73026224 73026414 -103947726 - MIR SINE MIR -69 193 1 268 182 0 30 chrX 73027056 73027122 -103947018 - L1MA8 LINE L1 -3 6288 6225 799 351 65 67 chrX 73027354 73028407 -103945733 + L2 LINE L2 2175 3220 -52 324 301 6 46 chrX 73028460 73028627 -103945513 + MIR SINE MIR 31 246 -16 243 0 0 0 chrX 73029602 73029629 -103944511 + (A)n Simple_repeat Simple_repeat 1 27 0 237 315 163 0 chrX 73029666 73029832 -103944308 - MIR SINE MIR -34 228 30 668 293 74 13 chrX 73029875 73030104 -103944036 + MIR SINE MIR 20 262 0 1787 90 106 133 chrX 73030844 73031279 -103942861 + MER4A LTR ERV1 1 423 -241 523 164 209 15 chrX 73031300 73031446 -103942694 + MER4C LTR ERV1 282 655 -9 1984 124 21 0 chrX 73032018 73032300 -103941840 + AluSx SINE Alu 4 291 -21 30 27 0 0 chrX 73032468 73032505 -103941635 + AT_rich Low_complexity Low_complexity 1 37 0 2048 204 40 2 chrX 73032780 73033182 -103940958 - MER47B DNA MER2_type 0 418 2 3961 128 52 19 chrX 73034752 73035470 -103938670 + L1MA4 LINE L1 5549 6289 -11 242 290 75 19 chrX 73035585 73035692 -103938448 + L1ME LINE L1 5678 5790 -372 2431 166 24 2 chrX 73035722 73036138 -103938002 - MSTB LTR MaLR -1 425 1 266 88 0 0 chrX 73036264 73036298 -103937842 + tRNA-Gln-CAG tRNA tRNA 5 38 -37 239 292 100 8 chrX 73036419 73036539 -103937601 + MLT1J2 LTR MaLR 97 227 -223 36682 79 33 7 chrX 73036776 73042757 -103931383 + L1PA6 LINE L1 11 6149 -5 28 48 0 0 chrX 73042874 73042916 -103931224 + AT_rich Low_complexity Low_complexity 1 42 0 870 209 122 0 chrX 73043016 73043212 -103930928 - MER58A DNA MER1_type -3 221 2 244 213 0 0 chrX 73043694 73043741 -103930399 - L2 LINE L2 -2 3311 3265 327 206 15 0 chrX 73044018 73044086 -103930054 + L1MD3 LINE L1 6737 6805 -1190 877 191 24 123 chrX 73044194 73044283 -103929857 + L1MD3 LINE L1 7724 7820 -175 3131 47 2 42 chrX 73044283 73044708 -103929432 + L1PA6 LINE L1 5747 6154 0 877 191 24 123 chrX 73044708 73044911 -103929229 + L1MD3 LINE L1 7820 7987 -8 246 362 43 0 chrX 73045161 73045255 -103928885 + MIR SINE MIR 18 115 -93 399 332 71 64 chrX 73045412 73045695 -103928445 - L2 LINE L2 -1 3271 2987 474 289 108 70 chrX 73045787 73045935 -103928205 + L1MEd LINE L1 435 576 -1914 2445 190 43 4 chrX 73045935 73046419 -103927721 + MLT1D LTR MaLR 2 504 -1 474 289 108 70 chrX 73046419 73046617 -103927523 + L1MEd LINE L1 576 765 -1725 1304 191 121 67 chrX 73046617 73047098 -103927042 + MER84 LTR ERV1 1 507 0 474 289 108 70 chrX 73047098 73047127 -103927013 + L1MEd LINE L1 765 791 -1699 2198 194 74 52 chrX 73047127 73047746 -103926394 + LTR27 LTR ERV1 3 635 -1 474 289 108 70 chrX 73047746 73047793 -103926347 + L1MEd LINE L1 791 835 -1655 2158 115 0 10 chrX 73047793 73048098 -103926042 + AluSc SINE Alu 1 302 -7 474 289 108 70 chrX 73048098 73048237 -103925903 + L1MEd LINE L1 835 967 -1523 866 211 134 0 chrX 73048237 73048431 -103925709 - MER58A DNA MER1_type -1 223 4 474 289 108 70 chrX 73048431 73048932 -103925208 + L1MEd LINE L1 967 1638 -852 228 232 0 36 chrX 73048943 73048999 -103925141 + LTR27 LTR ERV1 583 636 0 450 171 12 0 chrX 73049045 73049127 -103925013 + AluSg1 SINE Alu 1 83 -226 2349 98 50 0 chrX 73049450 73049788 -103924352 + THE1A LTR MaLR 1 355 0 11546 88 7 9 chrX 73049788 73050192 -103923948 + THE1A-int LTR MaLR 1 404 -1176 2135 118 0 7 chrX 73050192 73050496 -103923644 + AluSx SINE Alu 1 302 -10 11546 88 7 9 chrX 73050496 73051674 -103922466 + THE1A-int LTR MaLR 404 1580 0 2457 101 8 8 chrX 73051674 73052029 -103922111 + THE1A LTR MaLR 1 355 0 315 284 91 25 chrX 73052031 73052274 -103921866 + L1MEd LINE L1 2299 2557 -3572 239 300 10 30 chrX 73052363 73052463 -103921677 + L1MEd LINE L1 2707 2804 -3325 3675 178 42 25 chrX 73052502 73053304 -103920836 + L1MD1 LINE L1 5262 6077 -165 540 236 178 25 chrX 73053507 73053940 -103920200 + L1MEd LINE L1 2785 3283 -2846 760 48 0 57 chrX 73053949 73054054 -103920086 + HY3 scRNA scRNA 1 99 -2 308 283 136 27 chrX 73054163 73054347 -103919793 - L2 LINE L2 -655 2659 2456 275 330 143 35 chrX 73054398 73054656 -103919484 + L2 LINE L2 2814 3099 -173 920 173 45 0 chrX 73054686 73054842 -103919298 + MER46A DNA MER2_type 4 166 -70 345 184 40 46 chrX 73054842 73055016 -103919124 + (TA)n Simple_repeat Simple_repeat 2 174 0 405 67 0 50 chrX 73055056 73055116 -103919024 + MER46A DNA MER2_type 180 236 0 341 168 5 58 chrX 73055204 73055394 -103918746 + (TA)n Simple_repeat Simple_repeat 1 180 0 265 256 0 0 chrX 73055401 73055491 -103918649 - L1MC4 LINE L1 -1339 6703 6614 273 119 0 0 chrX 73055491 73055533 -103918607 + (TA)n Simple_repeat Simple_repeat 2 43 0 363 94 19 0 chrX 73055533 73055586 -103918554 + MER46A DNA MER2_type 183 236 0 731 202 32 134 chrX 73055622 73055875 -103918265 - MIR SINE MIR -8 254 28 3339 158 11 24 chrX 73055910 73056526 -103917614 + L1MB2 LINE L1 5537 6144 -27 22 0 0 0 chrX 73056534 73056556 -103917584 + AT_rich Low_complexity Low_complexity 1 22 0 811 336 96 57 chrX 73056820 73058008 -103916132 + L2 LINE L2 2029 3269 -3 553 303 83 92 chrX 73058191 73058660 -103915480 - L2 LINE L2 0 3272 2808 206 320 299 0 chrX 73058838 73058985 -103915155 - L2 LINE L2 -558 2756 2566 266 302 173 14 chrX 73059256 73059395 -103914745 - L2 LINE L2 -938 2376 2216 215 220 0 0 chrX 73059729 73059748 -103914392 + A-rich Low_complexity Low_complexity 1 19 -31 1702 190 43 3 chrX 73059748 73060048 -103914092 + AluJo SINE Alu 1 312 0 215 220 0 0 chrX 73060048 73060078 -103914062 + A-rich Low_complexity Low_complexity 18 50 0 494 329 19 0 chrX 73060131 73060292 -103913848 + MIR SINE MIR 85 248 -14 2157 106 9 37 chrX 73060451 73060772 -103913368 - AluSx SINE Alu 0 312 1 28 0 0 0 chrX 73061355 73061383 -103912757 + AT_rich Low_complexity Low_complexity 1 28 0 554 331 41 0 chrX 73062102 73062347 -103911793 - MIR SINE MIR -4 258 4 2310 92 0 0 chrX 73062409 73062701 -103911439 - AluY SINE Alu -19 292 1 942 224 12 67 chrX 73063267 73063521 -103910619 + MIR SINE MIR 2 241 -21 2293 73 16 7 chrX 73066067 73066370 -103907770 + AluSg SINE Alu 1 306 -4 638 135 10 0 chrX 73067634 73067738 -103906402 - MER53 DNA DNA -84 105 1 294 306 59 0 chrX 73067744 73067829 -103906311 - L2 LINE L2 -213 3059 2970 22 0 0 0 chrX 73069205 73069227 -103904913 + AT_rich Low_complexity Low_complexity 1 22 0 1523 141 7 67 chrX 73070540 73070809 -103903331 + AluSx SINE Alu 42 294 -18 244 195 161 58 chrX 73071873 73071960 -103902180 + MER5A DNA MER1_type 46 141 -48 1994 263 74 31 chrX 73071971 73072025 -103902115 - HAL1 LINE L1 -1 2506 2456 2065 124 7 13 chrX 73072025 73072323 -103901817 + AluSx SINE Alu 6 301 -11 1994 263 74 31 chrX 73072323 73073110 -103901030 - HAL1 LINE L1 -51 2456 1629 538 244 81 47 chrX 73073109 73073343 -103900797 + HAL1 LINE L1 791 1032 -1475 * 1913 149 9 19 chrX 73074259 73074574 -103899566 + AluJb SINE Alu 1 312 0 24 67 0 0 chrX 73075132 73075177 -103898963 + AT_rich Low_complexity Low_complexity 1 45 0 345 282 8 26 chrX 73075425 73075542 -103898598 + HAL1 LINE L1 884 998 -1509 5561 248 90 20 chrX 73075907 73077674 -103896466 + L1PA12 LINE L1 1 1890 -5691 8777 208 14 35 chrX 73077684 73080473 -103893667 + L1PA12 LINE L1 2676 5353 -2231 1065 157 5 0 chrX 73080469 73080654 -103893486 + L1PBa LINE L1 15 200 -6663 * 9696 146 34 3 chrX 73080654 73083729 -103890411 + L1PBa LINE L1 634 3926 -2936 40449 39 21 1 chrX 73083739 73089802 -103884338 + L1PA3 LINE L1 1 6187 0 307 343 67 0 chrX 73089812 73089946 -103884194 + L1M4 LINE L1 3685 3827 -2319 755 189 0 0 chrX 73090060 73090192 -103883948 + AluSq/x SINE Alu 2 133 -180 21 0 0 0 chrX 73090230 73090251 -103883889 + AT_rich Low_complexity Low_complexity 1 21 0 1328 273 99 20 chrX 73090325 73091031 -103883109 + L1M4 LINE L1 3874 4635 -1511 2169 125 14 0 chrX 73091035 73091330 -103882810 - AluSx SINE Alu -13 299 1 1342 291 63 9 chrX 73091411 73092154 -103881986 - L1M4 LINE L1 -2277 5288 4506 224 0 65 0 chrX 73092159 73092190 -103881950 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 6614 165 23 24 chrX 73092200 73094381 -103879759 - L1MA1 LINE L1 -24 6278 4095 1758 152 73 20 chrX 73094381 73094737 -103879403 + THE1C LTR MaLR 1 375 0 9843 110 39 39 chrX 73094737 73096318 -103877822 + THE1C-int LTR MaLR 1 1580 0 1941 150 65 8 chrX 73096320 73096673 -103877467 + THE1C LTR MaLR 3 375 0 6614 165 23 24 chrX 73096673 73096908 -103877232 - L1MA1 LINE L1 -2207 4095 3862 1698 229 17 23 chrX 73096908 73097379 -103876761 - L1M4 LINE L1 -3204 4361 3894 900 183 27 43 chrX 73097380 73097637 -103876503 - L1M4 LINE L1 -4103 3462 3210 1719 210 7 7 chrX 73097637 73097947 -103876193 - AluJb SINE Alu 0 312 3 16983 174 28 30 chrX 73097950 73101407 -103872733 - L1M4 LINE L1 -3990 3575 143 2375 72 0 0 chrX 73101407 73101698 -103872442 - AluY SINE Alu -1 310 20 16983 174 28 30 chrX 73101698 73101823 -103872317 - L1M4 LINE L1 -7422 143 19 586 295 42 5 chrX 73102049 73102242 -103871898 + L3 LINE CR1 1209 1408 -169 594 298 53 55 chrX 73102300 73102733 -103871407 + L1MC4a LINE L1 5576 6007 -1801 390 314 48 0 chrX 73102872 73102996 -103871144 + L3 LINE CR1 562 691 -886 2018 152 3 3 chrX 73103025 73103334 -103870806 + AluJb SINE Alu 1 309 -3 2345 95 7 3 chrX 73103543 73103848 -103870292 + AluSq SINE Alu 1 306 -7 27 49 0 0 chrX 73104763 73104804 -103869336 + AT_rich Low_complexity Low_complexity 1 41 0 483 60 0 0 chrX 73105546 73105613 -103868527 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 278 151 0 116 chrX 73106464 73106508 -103867632 + L1MA9 LINE L1 6215 6246 -66 1459 93 65 5 chrX 73106508 73106723 -103867417 - MER30 DNA MER1_type 0 230 3 278 151 0 116 chrX 73106723 73106764 -103867376 + L1MA9 LINE L1 6246 6290 -22 2041 108 20 7 chrX 73107216 73107511 -103866629 + AluSq SINE Alu 1 299 -14 2026 147 14 77 chrX 73107823 73108238 -103865902 + MLT1B LTR MaLR 2 390 0 318 363 62 0 chrX 73108346 73108459 -103865681 - L2 LINE L2 -5 3267 3148 270 390 24 16 chrX 73108621 73108744 -103865396 - L2 LINE L2 -189 3083 2960 1939 175 3 0 chrX 73109755 73110063 -103864077 - AluJo SINE Alu -2 310 2 3095 192 41 10 chrX 73111524 73112202 -103861938 + L1PA13 LINE L1 1289 1987 -4800 222 62 0 0 chrX 73112227 73112259 -103861881 + (TAG)n Simple_repeat Simple_repeat 1 32 0 2281 101 0 0 chrX 73112262 73112548 -103861592 - AluSq SINE Alu -27 286 1 939 113 14 0 chrX 73112568 73112710 -103861430 - L1PB1 LINE L1 -5 6146 6003 1635 135 45 85 chrX 73112724 73113101 -103861039 + THE1C LTR MaLR 14 375 0 1479 97 5 0 chrX 73113101 73113317 -103860823 - L1PB1 LINE L1 -144 6007 5791 332 153 47 0 chrX 73113320 73113405 -103860735 + (TG)n Simple_repeat Simple_repeat 2 90 0 219 116 0 47 chrX 73113405 73113448 -103860692 + (TA)n Simple_repeat Simple_repeat 1 41 0 7720 179 19 12 chrX 73113448 73115813 -103858327 - L1PB1 LINE L1 -347 5804 3431 2404 110 78 98 chrX 73115812 73115828 -103858312 - THE1C-int LTR MaLR -1083 497 482 * 486 25 25 37 chrX 73115828 73115909 -103858231 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1653 116 0 4 chrX 73115909 73116134 -103858006 - AluSc SINE Alu -1 359 56 2404 110 78 98 chrX 73116134 73116643 -103857497 - THE1C-int LTR MaLR -1096 484 1 323 122 0 0 chrX 73116643 73116692 -103857448 - THE1C LTR MaLR 0 428 380 258 32 0 0 chrX 73118795 73118826 -103855314 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1509 168 33 27 chrX 73118826 73119159 -103854981 - THE1C LTR MaLR -35 340 6 610 113 45 60 chrX 73119159 73119292 -103854848 + L1PA15 LINE L1 6034 6164 -1 2282 95 14 0 chrX 73119301 73119595 -103854545 + AluSc SINE Alu 2 299 -10 304 257 14 0 chrX 73119793 73119867 -103854273 - Charlie8 DNA MER1_type 0 2417 2343 2208 125 14 11 chrX 73119895 73120247 -103853893 + THE1A LTR MaLR 1 353 -2 11592 96 9 1 chrX 73120249 73121816 -103852324 + THE1A-int LTR MaLR 1 1580 0 2191 125 8 8 chrX 73121816 73122169 -103851971 + THE1A LTR MaLR 1 353 -2 238 260 31 62 chrX 73122177 73122273 -103851867 - Charlie8 DNA MER1_type -2019 398 306 356 298 97 18 chrX 73122414 73122693 -103851447 + L1MC5 LINE L1 7268 7568 -393 3417 139 22 2 chrX 73122750 73123339 -103850801 - L1MA4 LINE L1 -8 6292 5692 532 181 9 0 chrX 73123344 73123449 -103850691 - L1MA4 LINE L1 -663 5628 5523 431 307 36 21 chrX 73123472 73123664 -103850476 + L1MC5 LINE L1 7732 7926 -35 314 266 64 78 chrX 73123675 73123893 -103850247 + L1ME LINE L1 2 216 -5854 366 223 54 81 chrX 73123931 73124185 -103849955 + L1MC5 LINE L1 7000 7243 -728 460 243 83 73 chrX 73124296 73124815 -103849325 + L1MC5 LINE L1 7260 7783 -178 769 189 110 12 chrX 73124902 73125066 -103849074 - AluJo SINE Alu -15 297 118 445 183 0 0 chrX 73125866 73125959 -103848181 - L1PA16 LINE L1 -3 6163 6071 368 347 74 0 chrX 73125974 73126150 -103847990 + L1ME LINE L1 273 461 -5609 642 224 9 61 chrX 73126224 73126438 -103847702 + L1ME LINE L1 467 669 -5401 * 6881 29 0 0 chrX 73126431 73127289 -103846851 - L1P LINE L1 -1627 4519 3662 7556 31 1 0 chrX 73127290 73128891 -103845249 + L1PA3 LINE L1 4553 6155 0 1026 256 66 74 chrX 73128893 73129234 -103844906 + L1ME LINE L1 660 1002 -5078 2122 106 21 0 chrX 73129234 73129518 -103844622 + AluSp SINE Alu 3 292 -21 1026 256 66 74 chrX 73129518 73129802 -103844338 + L1ME LINE L1 1002 1287 -4793 2215 138 8 11 chrX 73129802 73130173 -103843967 + L1PA15 LINE L1 5796 6165 0 1026 256 66 74 chrX 73130173 73130813 -103843327 + L1ME LINE L1 1287 1907 -4173 1407 187 32 26 chrX 73130813 73131123 -103843017 + AluJo SINE Alu 1 312 0 1026 256 66 74 chrX 73131123 73131698 -103842442 + L1ME LINE L1 1907 2485 -3595 783 224 131 36 chrX 73131701 73132064 -103842076 - MLT1F1 LTR MaLR 0 567 220 7210 133 14 25 chrX 73132748 73133903 -103840237 - L1PA11 LINE L1 -2 6172 5041 4772 40 7 25 chrX 73133903 73134398 -103839742 - LTR10C LTR ERV1 0 591 107 2372 81 0 7 chrX 73134398 73134694 -103839446 + AluY SINE Alu 2 295 -16 4772 40 7 25 chrX 73134694 73134797 -103839343 - LTR10C LTR ERV1 -484 107 4 7210 133 14 25 chrX 73134797 73135724 -103838416 - L1PA11 LINE L1 -1133 5041 4106 895 146 20 134 chrX 73135724 73135970 -103838170 - MER20 DNA MER1_type 0 219 2 518 215 93 53 chrX 73135978 73136224 -103837916 - MER112 DNA MER1_type 0 256 1 2101 98 4 7 chrX 73136946 73137223 -103836917 + AluSq SINE Alu 1 276 -37 274 210 54 151 chrX 73137545 73137731 -103836409 - MER5C DNA MER1_type 0 324 157 1352 155 7 48 chrX 73137736 73138026 -103836114 - L1MA9 LINE L1 -3 6309 6032 1429 145 22 56 chrX 73138028 73138443 -103835697 + L1MA9 LINE L1 5654 6029 -271 557 120 130 0 chrX 73138451 73138559 -103835581 - MER5C DNA MER1_type -165 159 38 1613 192 64 139 chrX 73138663 73139225 -103834915 + MER50 LTR ERV1 1 488 -246 606 40 0 0 chrX 73139225 73139300 -103834840 - L1PA5 LINE L1 -8 6146 6072 1613 192 64 139 chrX 73139300 73139530 -103834610 + MER50 LTR ERV1 488 734 0 576 270 0 0 chrX 73140347 73140462 -103833678 + L2 LINE L2 3156 3270 -2 607 198 16 0 chrX 73140613 73140739 -103833401 + MER63A DNA MER1_type 83 210 0 442 232 0 71 chrX 73140920 73141032 -103833108 + MER5A DNA MER1_type 4 107 -82 1661 105 4 19 chrX 73141057 73141534 -103832606 - L1MA5 LINE L1 -4 6296 5767 340 200 0 0 chrX 73141537 73141597 -103832543 + MER5A DNA MER1_type 125 184 -5 619 300 105 69 chrX 73142520 73142996 -103831144 + MLT1K LTR MaLR 65 557 -31 426 256 126 76 chrX 73143569 73143807 -103830333 - MER102b DNA MER1_type -1 340 91 514 223 20 34 chrX 73143908 73144056 -103830084 - L2 LINE L2 0 3313 3168 361 314 107 0 chrX 73145685 73145825 -103828315 + MIR SINE MIR 107 261 -1 1118 286 145 5 chrX 73146093 73146527 -103827613 + LTR33 LTR ERVL 19 513 -8 533 247 128 35 chrX 73146610 73146837 -103827303 + MLT1K LTR MaLR 339 586 -2 187 396 100 21 chrX 73146850 73147090 -103827050 - L2 LINE L2 -190 3082 2824 2201 211 48 27 chrX 73147232 73147757 -103826383 - MLT1F LTR MaLR -6 536 1 232 325 194 25 chrX 73148063 73148223 -103825917 + L3b LINE CR1 1372 1558 -25 3408 135 25 0 chrX 73148225 73148780 -103825360 + L1PA15-16 LINE L1 705 1273 -5576 6279 46 1 3 chrX 73148781 73149548 -103824592 + L1PA5 LINE L1 5384 6149 -5 21 82 0 0 chrX 73150746 73150795 -103823345 + AT_rich Low_complexity Low_complexity 1 49 0 240 35 0 0 chrX 73151330 73151359 -103822781 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 1973 233 20 4 chrX 73151984 73152521 -103821619 + L1PA15-16 LINE L1 1840 2385 -4464 2530 52 0 0 chrX 73152524 73152830 -103821310 + AluY SINE Alu 1 306 -5 690 230 20 13 chrX 73153187 73153339 -103820801 + L2 LINE L2 3161 3313 0 249 355 13 0 chrX 73154051 73154127 -103820013 - L2 LINE L2 -9 3263 3187 230 303 129 8 chrX 73154308 73154440 -103819700 - L2 LINE L2 -235 3037 2890 550 249 81 54 chrX 73156620 73156841 -103817299 - MIR SINE MIR 0 262 36 328 294 22 59 chrX 73156874 73157010 -103817130 + MIR3 SINE MIR 38 168 -40 925 174 12 6 chrX 73159193 73159354 -103814786 + AluSg/x SINE Alu 132 293 -16 1814 158 0 63 chrX 73159362 73159678 -103814462 + AluJo SINE Alu 1 296 -16 336 295 9 36 chrX 73159844 73159956 -103814184 + MIR3 SINE MIR 83 191 -17 2146 163 46 12 chrX 73160081 73160243 -103813897 + MSTB LTR MaLR 1 156 -270 1786 178 0 23 chrX 73160243 73160552 -103813588 - AluJo SINE Alu -10 302 1 2146 163 46 12 chrX 73160552 73160801 -103813339 + MSTB LTR MaLR 156 426 0 248 194 333 21 chrX 73161197 73161341 -103812799 - MER112 DNA MER1_type -6 254 66 231 104 0 0 chrX 73161324 73161372 -103812768 - LTR66 LTR ERVL -171 439 392 * 191 188 21 0 chrX 73161372 73161420 -103812720 + (TA)n Simple_repeat Simple_repeat 2 50 0 1810 186 93 120 chrX 73162551 73163515 -103810625 - LTR1B LTR ERV1 0 1020 1 180 0 0 0 chrX 73163557 73163577 -103810563 + (T)n Simple_repeat Simple_repeat 1 20 0 448 235 66 29 chrX 73163933 73164069 -103810071 - MIR SINE MIR -16 246 106 1631 133 113 27 chrX 73164483 73165037 -103809103 - MER4A LTR ERV1 0 664 1 2293 118 0 0 chrX 73165671 73165984 -103808156 + AluSq SINE Alu 1 313 0 664 188 56 88 chrX 73166128 73166241 -103807899 - L1MC5 LINE L1 -36 7925 7810 5773 52 13 23 chrX 73166241 73166995 -103807145 + MER4E LTR ERV1 1 748 -18 2498 75 0 0 chrX 73166995 73167300 -103806840 + AluY SINE Alu 1 305 -6 5773 52 13 23 chrX 73167300 73167319 -103806821 + MER4E LTR ERV1 748 766 0 664 188 56 88 chrX 73167319 73167455 -103806685 - L1MC5 LINE L1 -151 7810 7684 2192 100 4 0 chrX 73168279 73168589 -103805551 - AluSq SINE Alu 0 311 1 411 257 34 91 chrX 73168872 73169047 -103805093 - MIR3 SINE MIR -21 187 23 26 0 0 0 chrX 73169099 73169125 -103805015 + AT_rich Low_complexity Low_complexity 1 26 0 225 309 79 40 chrX 73170652 73170778 -103803362 - MIR SINE MIR -6 256 126 2398 72 3 0 chrX 73171235 73171528 -103802612 - AluSp SINE Alu -18 295 2 1655 154 0 3 chrX 73171740 73172026 -103802114 - L1MB1 LINE L1 -1 6167 5883 975 175 5 30 chrX 73172027 73172227 -103801913 + L1MB1 LINE L1 5695 5889 -295 199 233 0 0 chrX 73172604 73172647 -103801493 - L2 LINE L2 -1 3312 3270 530 276 48 14 chrX 73173200 73173345 -103800795 - MIR SINE MIR -89 173 24 369 235 137 0 chrX 73173467 73173569 -103800571 + MIR SINE MIR 91 206 -56 21 36 0 0 chrX 73174330 73174358 -103799782 + AT_rich Low_complexity Low_complexity 1 28 0 2308 80 7 0 chrX 73175027 73175316 -103798824 + AluSc SINE Alu 1 291 -18 205 280 0 0 chrX 73175654 73175704 -103798436 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 263 389 16 0 chrX 73176244 73176370 -103797770 - L2 LINE L2 0 3313 3186 2223 90 0 0 chrX 73176733 73177010 -103797130 + AluSg SINE Alu 1 277 -33 186 71 0 0 chrX 73177010 73177038 -103797102 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 470 301 156 63 chrX 73177059 73177912 -103796228 - L2 LINE L2 -518 2796 1865 858 239 17 0 chrX 73178007 73178187 -103795953 - MER5A DNA MER1_type -1 188 6 1254 110 30 198 chrX 73181326 73181689 -103792451 + AluYb8 SINE Alu 1 302 -16 203 171 85 0 chrX 73183969 73184051 -103790089 + (TG)n Simple_repeat Simple_repeat 1 89 0 223 176 15 44 chrX 73185223 73185291 -103788849 + CT-rich Low_complexity Low_complexity 2 67 0 24 32 0 0 chrX 73189678 73189709 -103784431 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 73191531 73191554 -103782586 + AT_rich Low_complexity Low_complexity 1 23 0 368 127 0 0 chrX 73192651 73192714 -103781426 - Alu SINE Alu 0 302 240 258 32 0 0 chrX 73192859 73192890 -103781250 + (TG)n Simple_repeat Simple_repeat 2 32 0 283 255 49 59 chrX 73192896 73192998 -103781142 - L2 LINE L2 -16 3297 3197 308 173 0 53 chrX 73193949 73194024 -103780116 - L2 LINE L2 0 3313 3243 25 51 0 0 chrX 73194224 73194263 -103779877 + AT_rich Low_complexity Low_complexity 1 39 0 523 58 0 0 chrX 73196268 73196337 -103777803 - MER41B LTR ERV1 -86 549 481 180 135 0 0 chrX 73196411 73196448 -103777692 + (T)n Simple_repeat Simple_repeat 1 37 0 3714 91 8 0 chrX 73197250 73197776 -103776364 - L1MA1 LINE L1 -4 7717 7188 * 5793 108 9 6 chrX 73197773 73199543 -103774597 - L1PA14 LINE L1 -1 6160 4386 12765 167 79 4 chrX 73199545 73205047 -103769093 - L1MA1 LINE L1 -521 7200 1259 2033 117 3 19 chrX 73205047 73205397 -103768743 - MER4A LTR ERV1 0 664 261 624 141 0 10 chrX 73205397 73205496 -103768644 - MER4A LTR ERV1 -566 98 1 3238 198 58 40 chrX 73205504 73206252 -103767888 - L1MA1 LINE L1 -6787 778 18 357 314 71 36 chrX 73206806 73206946 -103767194 - MIR SINE MIR -78 184 40 4953 231 71 106 chrX 73207499 73208461 -103765679 - L2 LINE L2 0 3313 2319 1903 137 10 23 chrX 73208461 73208768 -103765372 - AluJo SINE Alu -9 303 1 4953 231 71 106 chrX 73208768 73209013 -103765127 - L2 LINE L2 -994 2319 2067 1765 164 0 32 chrX 73209013 73209323 -103764817 - AluJo SINE Alu -10 302 3 4953 231 71 106 chrX 73209323 73210867 -103763273 - L2 LINE L2 -1246 2067 658 1438 95 24 0 chrX 73211326 73211536 -103762604 - L1MA3 LINE L1 -1 6304 6090 210 37 0 0 chrX 73212322 73212349 -103761791 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 347 245 47 19 chrX 73213025 73213131 -103761009 + MIR SINE MIR 112 220 -42 201 196 0 20 chrX 73214442 73214493 -103759647 + (TAA)n Simple_repeat Simple_repeat 3 52 0 279 0 0 0 chrX 73214518 73214549 -103759591 + (TA)n Simple_repeat Simple_repeat 2 32 0 339 25 0 0 chrX 73215493 73215533 -103758607 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 16007 86 8 1 chrX 73215540 73218553 -103755587 - L1PA7 LINE L1 -13 6141 3114 1944 120 7 4 chrX 73218554 73218829 -103755311 - AluSx SINE Alu -15 297 22 27 49 0 0 chrX 73218999 73219040 -103755100 + AT_rich Low_complexity Low_complexity 1 41 0 505 247 73 17 chrX 73220246 73220424 -103753716 - MIR SINE MIR -1 261 74 237 365 61 7 chrX 73221217 73221365 -103752775 - MIR SINE MIR -64 144 31 1957 149 0 26 chrX 73221759 73222067 -103752073 - AluSx SINE Alu -12 300 1 2010 178 108 11 chrX 73222820 73223265 -103750875 + MLT1D LTR MaLR 18 505 0 221 254 17 17 chrX 73223286 73223345 -103750795 + L2 LINE L2 3246 3304 -9 2341 111 0 0 chrX 73224223 73224530 -103749610 + AluSx SINE Alu 1 307 -5 5602 115 7 5 chrX 73224852 73225004 -103749136 + L1PA15 LINE L1 5333 5483 -682 2323 81 3 0 chrX 73225004 73225311 -103748829 + AluSp SINE Alu 1 308 0 5602 115 7 5 chrX 73225311 73225985 -103748155 + L1PA15 LINE L1 5483 6162 -3 2093 126 0 0 chrX 73226007 73226300 -103747840 + AluSx SINE Alu 8 300 -12 197 264 127 55 chrX 73226601 73226711 -103747429 + L2 LINE L2 3191 3308 -5 24 32 0 0 chrX 73226713 73226744 -103747396 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 73227517 73227539 -103746601 + AT_rich Low_complexity Low_complexity 1 22 0 41 0 0 0 chrX 73228234 73228275 -103745865 + AT_rich Low_complexity Low_complexity 1 41 0 19646 184 20 19 chrX 73228702 73230751 -103743389 + L1PA13 LINE L1 1 2046 -4768 2433 93 0 3 chrX 73230751 73231063 -103743077 + AluY SINE Alu 1 311 0 19646 184 20 19 chrX 73231063 73235793 -103738347 + L1PA13 LINE L1 2046 6814 0 23 33 0 0 chrX 73235938 73235968 -103738172 + AT_rich Low_complexity Low_complexity 1 30 0 311 281 72 33 chrX 73236183 73236354 -103737786 + MIR SINE MIR 34 206 -56 209 266 0 16 chrX 73236372 73236436 -103737704 + L2 LINE L2 3158 3220 -93 226 390 27 42 chrX 73236686 73236945 -103737195 - L2 LINE L2 -192 3080 2826 322 304 20 54 chrX 73237635 73237783 -103736357 - MIR SINE MIR -65 197 55 349 145 60 24 chrX 73237817 73237900 -103736240 - L1MA8 LINE L1 -3 6288 6203 574 207 44 0 chrX 73237900 73238035 -103736105 + L1MA6 LINE L1 5727 5867 -433 180 265 73 29 chrX 73238036 73238104 -103736036 - MER5A DNA MER1_type -73 116 46 481 296 0 0 chrX 73238501 73238626 -103735514 + L2 LINE L2 3184 3308 -5 29 28 0 0 chrX 73239411 73239447 -103734693 + AT_rich Low_complexity Low_complexity 1 36 0 256 359 0 0 chrX 73239501 73239579 -103734561 - MIR SINE MIR -112 150 73 1097 116 6 0 chrX 73239719 73239892 -103734248 + (TTCC)n Simple_repeat Simple_repeat 3 176 0 1725 168 9 22 chrX 73239892 73240207 -103733933 - AluJo SINE Alu -1 311 1 354 333 29 14 chrX 73240930 73241068 -103733072 + MIR SINE MIR 33 172 -90 218 287 119 40 chrX 73241330 73241431 -103732709 - MER5A DNA MER1_type 0 189 81 518 149 7 2 chrX 73241801 73241903 -103732237 + L1MA3 LINE L1 6198 6300 0 25 31 0 0 chrX 73242532 73242564 -103731576 + AT_rich Low_complexity Low_complexity 1 32 0 218 346 19 32 chrX 73242683 73242839 -103731301 + MIR SINE MIR 34 187 -75 23 0 0 0 chrX 73243082 73243105 -103731035 + AT_rich Low_complexity Low_complexity 1 23 0 264 275 0 14 chrX 73243390 73243459 -103730681 + MIR SINE MIR 72 139 -69 280 294 28 28 chrX 73247648 73247791 -103726349 - MARNA DNA Mariner -117 469 327 2731 63 8 8 chrX 73250556 73250921 -103723219 - L1PA6 LINE L1 -7 6147 5783 1995 140 16 0 chrX 73251153 73251460 -103722680 + AluSx SINE Alu 1 312 0 388 175 50 12 chrX 73252399 73252479 -103721661 - MIR3 SINE MIR -49 159 77 1342 102 10 0 chrX 73253656 73253852 -103720288 - L1PA14 LINE L1 -9 6152 5955 592 97 21 0 chrX 73253954 73254047 -103720093 - L1 LINE L1 -901 5245 5151 4987 172 18 17 chrX 73254067 73254214 -103719926 - L1MA10 LINE L1 -6 6328 6183 2220 92 0 41 chrX 73254214 73254528 -103719612 + AluSx SINE Alu 1 301 -11 4987 172 18 17 chrX 73254528 73255696 -103718444 - L1MA10 LINE L1 -151 6183 4854 1205 196 95 16 chrX 73455698 73456004 -103518136 - MLT1D LTR MaLR -158 347 18 1359 154 0 36 chrX 73456757 73456978 -103517162 + AluSx SINE Alu 1 213 -99 29 28 0 0 chrX 73457801 73457837 -103516303 + AT_rich Low_complexity Low_complexity 1 36 0 255 359 0 0 chrX 73457891 73457969 -103516171 - MIR SINE MIR -112 150 73 375 154 0 0 chrX 73458109 73458174 -103515966 + CT-rich Low_complexity Low_complexity 4 68 0 1757 165 9 22 chrX 73458946 73459261 -103514879 + AluJo SINE Alu 1 311 -1 705 73 0 0 chrX 73459261 73459357 -103514783 + (GGAA)n Simple_repeat Simple_repeat 3 98 0 991 160 6 0 chrX 73459469 73459625 -103514515 - AluJo SINE Alu -155 157 1 1958 124 65 0 chrX 73459625 73459981 -103514159 - L1MC3 LINE L1 -151 7634 7256 1585 137 25 3 chrX 73460252 73460563 -103513577 + Tigger4(Zombi) DNA MER2_type 32 2724 -7 2091 127 7 0 chrX 73460564 73460855 -103513285 + AluSx SINE Alu 1 293 -19 355 322 132 7 chrX 73460908 73461060 -103513080 + L2 LINE L2 3102 3272 0 5476 160 56 3 chrX 73461140 73462210 -103511930 - Tigger3b DNA MER2_type 0 1231 104 3134 190 3 3 chrX 73462210 73462793 -103511347 - MER52A LTR ERV1 0 1755 1173 1659 251 83 34 chrX 73463599 73464253 -103509887 - L1ME3A LINE L1 -39 6131 5446 1060 157 5 43 chrX 73464801 73465030 -103509110 - AluJb SINE Alu 0 331 110 1949 143 122 18 chrX 73465030 73465416 -103508724 + MSTA LTR MaLR 1 426 -2 4771 143 15 50 chrX 73465419 73466367 -103507773 + MSTA-int LTR MaLR 3 917 -663 17518 187 15 37 chrX 73466487 73466869 -103507271 + L1PA13 LINE L1 1078 1467 -4696 2476 90 0 3 chrX 73466869 73467180 -103506960 + AluY SINE Alu 1 310 -1 17518 187 15 37 chrX 73467180 73471991 -103502149 + L1PA13 LINE L1 1467 6163 0 23 33 0 0 chrX 73472136 73472166 -103501974 + AT_rich Low_complexity Low_complexity 1 30 0 311 281 72 33 chrX 73472380 73472551 -103501589 + MIR SINE MIR 34 206 -56 204 266 0 16 chrX 73472569 73472633 -103501507 + L2 LINE L2 3158 3220 -93 232 390 27 42 chrX 73472883 73473142 -103500998 - L2 LINE L2 -192 3080 2826 304 299 27 54 chrX 73473838 73473985 -103500155 - MIR SINE MIR -65 197 55 340 145 60 24 chrX 73474019 73474102 -103500038 - L1MA8 LINE L1 -3 6288 6203 535 207 44 0 chrX 73474102 73474237 -103499903 + L1MA6 LINE L1 5727 5867 -433 181 265 73 29 chrX 73474238 73474306 -103499834 - MER5A DNA MER1_type -73 116 46 482 296 0 0 chrX 73474703 73474828 -103499312 + L2 LINE L2 3184 3308 -5 233 365 61 7 chrX 73475111 73475259 -103498881 + MIR SINE MIR 31 184 -64 502 247 73 17 chrX 73476052 73476230 -103497910 + MIR SINE MIR 74 261 -1 27 49 0 0 chrX 73477436 73477477 -103496663 + AT_rich Low_complexity Low_complexity 1 41 0 1944 123 7 4 chrX 73477647 73477923 -103496217 + AluSx SINE Alu 22 298 -14 15194 112 1 0 chrX 73477924 73480971 -103493169 + L1PA7 LINE L1 3114 6141 -13 411 21 0 0 chrX 73480978 73481026 -103493114 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 387 0 0 0 chrX 73481970 73482013 -103492127 + (TA)n Simple_repeat Simple_repeat 2 44 0 201 196 0 20 chrX 73482038 73482089 -103492051 + (TTA)n Simple_repeat Simple_repeat 3 52 0 7020 213 41 11 chrX 73482328 73483810 -103490330 - L1PA13 LINE L1 -5261 1526 1 41 0 0 0 chrX 73484237 73484278 -103489862 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 73484973 73484995 -103489145 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 73485769 73485800 -103488340 + AT_rich Low_complexity Low_complexity 1 31 0 196 264 127 55 chrX 73485802 73485912 -103488228 - L2 LINE L2 -5 3308 3191 2136 116 0 13 chrX 73486203 73486506 -103487634 - AluSx SINE Alu -6 306 8 5289 116 12 0 chrX 73486528 73487195 -103486945 - L1PA15 LINE L1 -3 6162 5482 2344 86 3 0 chrX 73487195 73487509 -103486631 - AluSp SINE Alu 0 313 1 5289 116 12 0 chrX 73487509 73487661 -103486479 - L1PA15 LINE L1 -683 5482 5333 2369 111 0 0 chrX 73487983 73488290 -103485850 - AluSx SINE Alu -5 307 1 222 254 17 17 chrX 73489168 73489227 -103484913 - L2 LINE L2 -9 3304 3246 657 167 61 0 chrX 73489248 73489380 -103484760 - MLT1D LTR MaLR 0 505 366 2165 155 26 34 chrX 73489502 73489967 -103484173 + L1P LINE L1 3455 3915 -2231 1044 162 5 0 chrX 73489963 73490148 -103483992 + L1PBa LINE L1 15 200 -6663 * 9696 146 34 3 chrX 73490148 73493223 -103480917 + L1PBa LINE L1 634 3926 -2936 37832 44 26 2 chrX 73493232 73498192 -103475948 + L1P LINE L1 1 5083 -1063 1001 76 0 0 chrX 73500570 73500701 -103473439 + AluSg SINE Alu 1 131 -179 412 114 51 0 chrX 73500710 73500789 -103473351 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 1154 119 24 0 chrX 73500789 73500957 -103473183 + AluSg SINE Alu 123 294 -16 203 171 85 0 chrX 73503237 73503319 -103470821 + (TG)n Simple_repeat Simple_repeat 1 89 0 223 176 15 44 chrX 73504491 73504559 -103469581 + CT-rich Low_complexity Low_complexity 2 67 0 24 32 0 0 chrX 73508946 73508977 -103465163 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 73510799 73510822 -103463318 + AT_rich Low_complexity Low_complexity 1 23 0 362 127 0 0 chrX 73511919 73511982 -103462158 - Alu SINE Alu 0 302 240 308 173 0 53 chrX 73513149 73513224 -103460916 - L2 LINE L2 0 3313 3243 25 51 0 0 chrX 73513424 73513463 -103460677 + AT_rich Low_complexity Low_complexity 1 39 0 523 58 0 0 chrX 73515465 73515534 -103458606 - MER41B LTR ERV1 -86 549 481 180 135 0 0 chrX 73515608 73515645 -103458495 + (T)n Simple_repeat Simple_repeat 1 37 0 3687 93 8 0 chrX 73516447 73516973 -103457167 - L1MA1 LINE L1 -4 7717 7188 * 5748 112 9 7 chrX 73516970 73518741 -103455399 - L1PA14 LINE L1 -1 6160 4386 12762 164 77 23 chrX 73518743 73524361 -103449779 - L1MA1 LINE L1 -521 7200 1259 2025 117 0 20 chrX 73524361 73524661 -103449479 - MER4A LTR ERV1 0 664 371 2724 199 63 47 chrX 73524773 73525457 -103448683 - L1MA1 LINE L1 -6853 712 18 353 314 71 36 chrX 73526011 73526151 -103447989 - MIR SINE MIR -78 184 40 5268 233 64 120 chrX 73526704 73527747 -103446393 - L2 LINE L2 0 3313 2212 1855 141 10 23 chrX 73527747 73528053 -103446087 - AluJo SINE Alu -10 302 1 5268 233 64 120 chrX 73528053 73528298 -103445842 - L2 LINE L2 -1101 2212 1955 1741 164 0 32 chrX 73528298 73528608 -103445532 - AluJo SINE Alu -10 302 3 5268 233 64 120 chrX 73528608 73530152 -103443988 - L2 LINE L2 -1358 1955 658 1441 95 24 0 chrX 73530611 73530821 -103443319 - L1MA3 LINE L1 -1 6304 6090 210 37 0 0 chrX 73531607 73531634 -103442506 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 353 245 47 19 chrX 73532310 73532416 -103441724 + MIR SINE MIR 112 220 -42 218 287 119 40 chrX 73533168 73533269 -103440871 - MER5A DNA MER1_type 0 189 81 523 149 7 2 chrX 73533639 73533741 -103440399 + L1MA3 LINE L1 6198 6300 0 25 31 0 0 chrX 73534370 73534402 -103439738 + AT_rich Low_complexity Low_complexity 1 32 0 233 346 19 32 chrX 73534521 73534677 -103439463 + MIR SINE MIR 34 187 -75 180 378 40 0 chrX 73534933 73535007 -103439133 - L2 LINE L2 -1 3312 3236 260 275 0 14 chrX 73535228 73535297 -103438843 + MIR SINE MIR 72 139 -69 291 294 28 28 chrX 73539486 73539629 -103434511 - MARNA DNA Mariner -117 469 327 2710 63 8 8 chrX 73542394 73542759 -103431381 - L1PA6 LINE L1 -7 6147 5783 1956 141 16 0 chrX 73542991 73543297 -103430843 + AluSx SINE Alu 1 311 -1 388 175 50 12 chrX 73544236 73544316 -103429824 - MIR3 SINE MIR -49 159 77 1333 102 10 0 chrX 73545493 73545689 -103428451 - L1PA14 LINE L1 -9 6152 5955 597 97 21 0 chrX 73545791 73545884 -103428256 - L1 LINE L1 -901 5245 5151 5026 178 19 16 chrX 73545904 73546051 -103428089 - L1MA10 LINE L1 -6 6328 6183 2141 113 0 31 chrX 73546051 73546369 -103427771 + AluSx SINE Alu 1 308 -4 5026 178 19 16 chrX 73546369 73547809 -103426331 - L1MA10 LINE L1 -151 6183 4579 1754 174 25 65 chrX 73547918 73548320 -103425820 - MLT1B LTR MaLR -1 389 4 420 298 40 13 chrX 73548466 73548617 -103425523 + L3 LINE CR1 759 913 -664 27 0 0 0 chrX 73551225 73551252 -103422888 + AT_rich Low_complexity Low_complexity 1 27 0 283 210 13 134 chrX 73553832 73553989 -103420151 + MER112 DNA MER1_type 118 255 -5 22 0 0 0 chrX 73554127 73554149 -103419991 + AT_rich Low_complexity Low_complexity 1 22 0 10763 182 16 19 chrX 73554149 73557374 -103416766 - L1PB1 LINE L1 -1 6866 3653 2486 209 169 14 chrX 73557415 73558212 -103415928 - L1PB1 LINE L1 -5700 1163 243 5676 115 20 7 chrX 73558364 73559535 -103414605 + L1PA13 LINE L1 4975 6162 -1 2434 101 8 8 chrX 73559822 73560177 -103413963 - THE1A LTR MaLR 0 355 1 690 188 39 0 chrX 73560628 73560782 -103413358 - L1MC3 LINE L1 -9 7776 7617 652 150 0 0 chrX 73560797 73560897 -103413243 - AluSg/x SINE Alu -18 294 195 4895 231 13 69 chrX 73560998 73562662 -103411478 - L1P3 LINE L1 -3351 4233 2673 * 6159 247 90 20 chrX 73562659 73564426 -103409714 - L1P3 LINE L1 -5691 1890 1 345 282 8 26 chrX 73564791 73564908 -103409232 - HAL1 LINE L1 -1509 998 884 24 67 0 0 chrX 73565156 73565201 -103408939 + AT_rich Low_complexity Low_complexity 1 45 0 1824 156 9 19 chrX 73565759 73566074 -103408066 - AluJb SINE Alu 0 312 1 234 204 20 0 chrX 73566940 73566989 -103407151 - MER21B LTR ERV1 -485 378 329 591 244 81 47 chrX 73566990 73567224 -103406916 - HAL1 LINE L1 -1475 1032 791 * 2225 263 74 31 chrX 73567223 73568010 -103406130 + HAL1 LINE L1 1629 2456 -51 2043 124 7 13 chrX 73568010 73568308 -103405832 - AluSx SINE Alu -11 301 6 2225 263 74 31 chrX 73568308 73568362 -103405778 + HAL1 LINE L1 2456 2506 -1 244 195 161 58 chrX 73568373 73568460 -103405680 - MER5A DNA MER1_type -48 141 46 1508 141 7 67 chrX 73569524 73569793 -103404347 - AluSx SINE Alu -18 294 42 22 0 0 0 chrX 73571106 73571128 -103403012 + AT_rich Low_complexity Low_complexity 1 22 0 294 306 59 0 chrX 73572504 73572589 -103401551 + L2 LINE L2 2970 3059 -213 638 135 10 0 chrX 73572595 73572699 -103401441 + MER53 DNA DNA 1 105 -84 2293 73 16 7 chrX 73573963 73574266 -103399874 - AluSg SINE Alu -4 306 1 942 224 12 67 chrX 73576812 73577066 -103397074 - MIR SINE MIR -21 241 2 2310 92 0 0 chrX 73577632 73577924 -103396216 + AluY SINE Alu 1 292 -19 554 331 41 0 chrX 73577985 73578230 -103395910 + MIR SINE MIR 4 258 -4 28 0 0 0 chrX 73578949 73578977 -103395163 + AT_rich Low_complexity Low_complexity 1 28 0 263 389 16 0 chrX 73579147 73579273 -103394867 - L2 LINE L2 0 3313 3186 2211 90 0 0 chrX 73579637 73579914 -103394226 + AluSg SINE Alu 1 277 -33 186 71 0 0 chrX 73579914 73579942 -103394198 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 456 303 156 61 chrX 73579963 73580814 -103393326 - L2 LINE L2 -518 2796 1865 858 239 17 0 chrX 73580909 73581089 -103393051 - MER5A DNA MER1_type -1 188 6 2524 132 9 21 chrX 73581945 73582377 -103391763 + MSTA-int LTR MaLR 1153 1579 -1 1998 143 135 5 chrX 73582378 73582757 -103391383 + MSTA LTR MaLR 1 428 0 256 86 0 0 chrX 73582761 73582796 -103391344 - FLAM SINE Alu -22 111 77 555 272 59 45 chrX 73582860 73583150 -103390990 + L1MA9 LINE L1 5969 6262 -50 36 70 0 0 chrX 73583650 73583721 -103390419 + AT_rich Low_complexity Low_complexity 1 71 0 913 214 0 0 chrX 73584174 73584333 -103389807 + FRAM SINE Alu 1 152 -24 306 279 100 43 chrX 73584343 73584483 -103389657 + MIR SINE MIR 47 194 -68 4849 219 26 23 chrX 73585001 73586898 -103387242 + L1PA15 LINE L1 1224 3147 -3650 1489 236 28 12 chrX 73586905 73587337 -103386803 + L1PA15 LINE L1 3708 4146 -2651 7826 214 4 1 chrX 73587378 73589938 -103384202 + L1PA15 LINE L1 4263 6816 0 6488 139 4 5 chrX 73591058 73592587 -103381553 - L1PB1 LINE L1 -2 6149 4623 2417 190 0 20 chrX 73592585 73593090 -103381050 + L1PB1 LINE L1 4096 4590 -1556 * 249 57 0 0 chrX 73594487 73594522 -103379618 + (TA)n Simple_repeat Simple_repeat 2 36 0 * 279 0 0 0 chrX 73594521 73594552 -103379588 + (GA)n Simple_repeat Simple_repeat 2 32 0 259 337 0 30 chrX 73595212 73595313 -103378827 + MIR SINE MIR 50 147 -61 22 0 0 0 chrX 73595470 73595492 -103378648 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrX 73595805 73595834 -103378306 + AT_rich Low_complexity Low_complexity 1 29 0 227 329 14 14 chrX 73596138 73596208 -103377932 + Charlie1 DNA MER1_type 2 71 -2690 * 906 186 110 49 chrX 73596206 73596469 -103377671 + Charlie1 DNA MER1_type 2343 2621 -140 401 248 62 19 chrX 73596696 73596857 -103377283 - L1ME4a LINE L1 -165 5956 5789 273 282 0 0 chrX 73596951 73597022 -103377118 - MIR SINE MIR -10 252 182 1461 165 4 4 chrX 73597179 73597421 -103376719 - AluJo SINE Alu -70 242 1 248 170 64 0 chrX 73599372 73599419 -103374721 + L2 LINE L2 3215 3264 -8 278 252 150 41 chrX 73600398 73600545 -103373595 - MIR SINE MIR -70 192 30 1703 176 3 25 chrX 73601712 73602031 -103372109 + AluJo SINE Alu 1 312 0 201 147 0 0 chrX 73605772 73605806 -103368334 + (TG)n Simple_repeat Simple_repeat 2 35 0 1070 167 16 0 chrX 73605931 73606117 -103368023 - MER5A DNA MER1_type 0 189 1 347 274 12 12 chrX 73606226 73606310 -103367830 + MIR3 SINE MIR 111 194 -14 648 279 85 28 chrX 73606429 73606676 -103367464 + MIR SINE MIR 2 262 0 462 273 8 8 chrX 73607408 73607529 -103366611 + MIR3 SINE MIR 81 201 -7 808 227 58 0 chrX 73608103 73608275 -103365865 - MIR SINE MIR 0 262 81 559 0 0 0 chrX 73608324 73608386 -103365754 + (TTTTA)n Simple_repeat Simple_repeat 3 70 0 1942 133 4 0 chrX 73608386 73608665 -103365475 - AluSx SINE Alu -1 343 3 3370 94 13 26 chrX 73608673 73609213 -103364927 - L1MA2 LINE L1 0 6304 5772 248 0 31 0 chrX 73609842 73609874 -103364266 + (TA)n Simple_repeat Simple_repeat 2 34 0 180 246 62 46 chrX 73610048 73610113 -103364027 - MIR3 SINE MIR -141 67 2 26 30 0 0 chrX 73610737 73610770 -103363370 + AT_rich Low_complexity Low_complexity 1 33 0 185 349 0 16 chrX 73611266 73611329 -103362811 + L2 LINE L2 3206 3267 -5 2558 151 27 0 chrX 73611668 73612033 -103362107 - L1PB4 LINE L1 -1 6155 5774 252 0 0 0 chrX 73612033 73612061 -103362079 + (TG)n Simple_repeat Simple_repeat 2 29 0 2558 151 27 0 chrX 73612061 73612146 -103361994 - L1PB4 LINE L1 -382 5774 5693 206 250 0 0 chrX 73612277 73612321 -103361819 + (CAA)n Simple_repeat Simple_repeat 3 46 0 195 42 0 0 chrX 73614285 73614309 -103359831 + (T)n Simple_repeat Simple_repeat 1 24 0 2522 48 3 13 chrX 73614320 73614631 -103359509 - AluY SINE Alu -3 308 1 6730 135 21 5 chrX 73615242 73617179 -103356961 - L1MA1 LINE L1 0 6302 4333 9449 93 6 3 chrX 73617179 73618458 -103355682 + HSMAR1 DNA Mariner 5 1287 0 6730 135 21 5 chrX 73618458 73618496 -103355644 - L1MA1 LINE L1 -1969 4333 4297 * 10983 109 35 30 chrX 73618478 73621025 -103353115 + L1PA7 LINE L1 404 3045 -3416 6497 91 9 6 chrX 73621018 73622605 -103351535 + L1PA7 LINE L1 3992 5665 -804 * 2768 7 0 3 chrX 73622605 73622911 -103351229 - AluYa5 SINE Alu -6 305 1 6497 91 9 6 chrX 73622911 73623704 -103350436 + L1PA7 LINE L1 5665 6454 -15 330 26 0 0 chrX 73623705 73623744 -103350396 + (CA)n Simple_repeat Simple_repeat 2 40 0 15965 197 22 27 chrX 73623748 73625949 -103348191 - L1M4 LINE L1 -1807 5758 3548 2569 13 17 10 chrX 73625949 73626247 -103347893 - AluYb8 SINE Alu -6 312 13 15965 197 22 27 chrX 73626247 73629238 -103344902 - L1M4 LINE L1 -4017 3548 592 198 0 0 0 chrX 73629242 73629264 -103344876 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 40274 36 23 2 chrX 73629264 73635259 -103338881 - L1PA3 LINE L1 -10 6145 21 2008 226 30 38 chrX 73635267 73635843 -103338297 - L1M4 LINE L1 -6970 595 25 2675 35 0 6 chrX 73635931 73636244 -103337896 + AluY SINE Alu 1 311 0 258 125 0 0 chrX 73636857 73636905 -103337235 + (TA)n Simple_repeat Simple_repeat 1 48 0 612 228 0 15 chrX 73637641 73637777 -103336363 + MER94 DNA DNA 1 134 0 209 267 0 0 chrX 73639268 73639313 -103334827 + L2 LINE L2 3220 3264 -8 1541 86 66 8 chrX 73639740 73639996 -103334144 - L1MA4A LINE L1 -5 6298 6028 2274 18 4 22 chrX 73640253 73640529 -103333611 + L1PA4 LINE L1 5882 6152 -3 239 29 57 0 chrX 73641956 73641991 -103332149 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chrX 73642552 73642575 -103331565 + AT_rich Low_complexity Low_complexity 1 23 0 904 253 24 16 chrX 73642718 73642967 -103331173 - MIR SINE MIR 0 262 12 373 280 76 25 chrX 73642988 73643106 -103331034 + MIR SINE MIR 18 141 -67 530 327 28 36 chrX 73643222 73643470 -103330670 + L3 LINE CR1 1329 1574 -3 203 216 0 20 chrX 73643526 73643577 -103330563 + (TA)n Simple_repeat Simple_repeat 2 51 0 2241 141 56 2 chrX 73643644 73644056 -103330084 + L1MA6 LINE L1 4558 4991 -1155 3698 152 5 35 chrX 73645249 73646236 -103327904 + L1MA6 LINE L1 4980 5950 -350 2827 105 42 9 chrX 73646236 73646664 -103327476 + MLT2A1 LTR ERVL 1 442 -2 41134 78 9 4 chrX 73646666 73652289 -103321851 + HERVL-A1 LTR ERVL 1 5654 0 2570 101 69 7 chrX 73652289 73652697 -103321443 + MLT2A1 LTR ERVL 1 433 -11 1380 174 82 10 chrX 73652698 73653003 -103321137 + L1MA6 LINE L1 5952 6278 -22 547 321 21 5 chrX 73653305 73653492 -103320648 + MIR SINE MIR 13 202 -60 9009 146 43 11 chrX 73653593 73654068 -103320072 + Tigger1 DNA MER2_type 2 460 -1958 1619 201 3 13 chrX 73654068 73654371 -103319769 + AluJb SINE Alu 1 300 -12 9009 146 43 11 chrX 73654371 73655550 -103318590 + Tigger1 DNA MER2_type 460 1709 -709 4622 105 33 72 chrX 73655550 73655622 -103318518 - LTR19C LTR ERV1 0 779 706 477 0 0 0 chrX 73655622 73655675 -103318465 + (CA)n Simple_repeat Simple_repeat 2 54 0 4622 105 33 72 chrX 73655675 73656411 -103317729 - LTR19C LTR ERV1 -73 706 2 1001 192 12 72 chrX 73656414 73656671 -103317469 - HUERS-P3 LTR ERV1 0 8919 7172 2231 112 0 0 chrX 73656671 73656967 -103317173 + AluSg1 SINE Alu 1 296 -13 18095 201 37 45 chrX 73657170 73663866 -103310274 - HUERS-P3 LTR ERV1 -828 6590 2 1134 84 45 34 chrX 73663872 73664050 -103310090 - LTR19C LTR ERV1 -599 180 1 4242 133 11 21 chrX 73664050 73664405 -103309735 + Tigger1 DNA MER2_type 1709 2055 -363 2026 64 4 0 chrX 73664405 73664655 -103309485 - AluY SINE Alu -5 306 56 4242 133 11 21 chrX 73664655 73665006 -103309134 + Tigger1 DNA MER2_type 2055 2408 -10 214 200 18 18 chrX 73665156 73665211 -103308929 + GA-rich Low_complexity Low_complexity 2 56 0 26 0 0 0 chrX 73665392 73665418 -103308722 + AT_rich Low_complexity Low_complexity 1 26 0 287 277 97 63 chrX 73665649 73665855 -103308285 + MIR SINE MIR 1 213 -49 1735 153 30 0 chrX 73666028 73666290 -103307850 + AluSg SINE Alu 1 270 -40 23 19 0 39 chrX 73666306 73666318 -103307822 + AT_rich Low_complexity Low_complexity 1 12 -38 240 35 0 0 chrX 73666318 73666347 -103307793 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 19 0 39 chrX 73666347 73666366 -103307774 + AT_rich Low_complexity Low_complexity 12 30 -20 1410 165 8 8 chrX 73666366 73666620 -103307520 - L1PA16 LINE L1 -7 6159 5906 23 19 0 39 chrX 73666620 73666639 -103307501 + AT_rich Low_complexity Low_complexity 30 50 0 296 270 0 0 chrX 73666795 73666858 -103307282 - L2 LINE L2 0 3313 3251 292 384 27 0 chrX 73667499 73667611 -103306529 - MIR3 SINE MIR -23 185 71 23 0 0 0 chrX 73670195 73670218 -103303922 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 73670415 73670436 -103303704 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chrX 73671297 73671330 -103302810 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chrX 73671533 73671568 -103302572 + AT_rich Low_complexity Low_complexity 1 35 0 12973 96 8 1 chrX 73673595 73676218 -103297922 - L1PA7 LINE L1 -5 6149 3516 17460 124 15 10 chrX 73676218 73679017 -103295123 + L1P LINE L1 792 3606 -2540 990 235 16 45 chrX 73679295 73679538 -103294602 - MIR SINE MIR -25 237 2 14051 135 19 37 chrX 73679971 73682050 -103292090 + Tigger1 DNA MER2_type 1 2116 -302 1320 217 7 27 chrX 73682050 73682350 -103291790 + AluJo SINE Alu 1 294 -18 1766 156 47 0 chrX 73682358 73682633 -103291507 + AluSx SINE Alu 1 288 -24 14051 135 19 37 chrX 73682633 73683006 -103291134 + Tigger1 DNA MER2_type 2123 2418 0 2303 89 9 6 chrX 73683712 73684048 -103290092 + L1MA1 LINE L1 5966 6302 0 189 0 0 0 chrX 73684157 73684178 -103289962 + (TA)n Simple_repeat Simple_repeat 2 22 0 187 246 79 88 chrX 73684782 73684896 -103289244 + L2 LINE L2 1893 2005 -1309 315 288 25 8 chrX 73685248 73685366 -103288774 + GA-rich Low_complexity Low_complexity 4 123 0 22 80 0 0 chrX 73685452 73685502 -103288638 + AT_rich Low_complexity Low_complexity 1 50 0 26 30 0 0 chrX 73686734 73686767 -103287373 + AT_rich Low_complexity Low_complexity 1 33 0 4241 133 25 43 chrX 73688618 73689402 -103284738 - LTR1 LTR ERV1 0 785 16 22 56 0 0 chrX 73689665 73689701 -103284439 + AT_rich Low_complexity Low_complexity 1 36 0 2190 99 0 7 chrX 73689717 73690011 -103284129 + AluSx SINE Alu 1 292 -20 32230 26 0 0 chrX 73690012 73693856 -103280284 - L1HS LINE L1 -798 5348 1504 7271 9 0 0 chrX 73693850 73694666 -103279474 + L1HS LINE L1 5340 6155 0 * 225 65 0 0 chrX 73694684 73694715 -103279425 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 4530 152 10 84 chrX 73694743 73695377 -103278763 - L1PA15 LINE L1 -3 6162 5482 965 166 6 0 chrX 73695377 73695534 -103278606 - AluJb SINE Alu -26 286 129 4530 152 10 84 chrX 73695534 73696507 -103277633 - L1PA15 LINE L1 -683 5482 4513 26 0 0 0 chrX 73696547 73696573 -103277567 + AT_rich Low_complexity Low_complexity 1 26 0 1703 143 29 10 chrX 73696643 73696951 -103277189 - L1PB3 LINE L1 0 6154 5841 248 103 0 0 chrX 73696951 73696990 -103277150 + L1P5 LINE L1 5451 5489 -662 200 333 11 32 chrX 73697758 73697851 -103276289 - L2 LINE L2 -236 3036 2946 450 0 0 0 chrX 73698265 73698315 -103275825 + (CA)n Simple_repeat Simple_repeat 1 50 0 357 62 0 0 chrX 73698918 73698966 -103275174 + (TG)n Simple_repeat Simple_repeat 2 49 0 25 31 0 0 chrX 73699000 73699032 -103275108 + AT_rich Low_complexity Low_complexity 1 32 0 1649 189 3 13 chrX 73699299 73699611 -103274529 + AluJo SINE Alu 1 309 -3 1050 184 4 51 chrX 73699703 73699937 -103274203 - AluJo SINE Alu -8 304 82 24 0 0 0 chrX 73700668 73700692 -103273448 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 73702149 73702171 -103271969 + AT_rich Low_complexity Low_complexity 1 22 0 219 174 22 0 chrX 73704528 73704574 -103269566 + CT-rich Low_complexity Low_complexity 2 48 0 2151 188 70 0 chrX 73706441 73706839 -103267301 + MSTB LTR MaLR 1 426 0 539 299 14 58 chrX 73707373 73707580 -103266560 - MIR3 SINE MIR 0 208 11 244 304 61 50 chrX 73708075 73708256 -103265884 + L2 LINE L2 3127 3309 -4 1409 158 24 24 chrX 73708384 73708637 -103265503 - AluJo SINE Alu 0 312 60 249 240 0 29 chrX 73709088 73709192 -103264948 + T-rich Low_complexity Low_complexity 1 101 0 474 247 68 37 chrX 73709844 73710034 -103264106 - L2 LINE L2 0 3313 3118 400 224 26 60 chrX 73712352 73712468 -103261672 - Charlie8 DNA MER1_type -2153 264 153 4250 113 3 2 chrX 73712514 73713136 -103261004 - L1PA16 LINE L1 -18 6148 5526 280 274 36 0 chrX 73713417 73713501 -103260639 + MIR SINE MIR 67 153 -55 495 93 21 10 chrX 73715162 73715259 -103258881 + (TA)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chrX 73715634 73715654 -103258486 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 432 139 0 0 chrX 73715951 73716030 -103258110 + (TG)n Simple_repeat Simple_repeat 2 80 0 23 33 0 0 chrX 73718077 73718107 -103256033 + AT_rich Low_complexity Low_complexity 1 30 0 1215 244 11 72 chrX 73718185 73718545 -103255595 - MER102b DNA MER1_type -3 338 1 21 36 0 0 chrX 73718773 73718801 -103255339 + AT_rich Low_complexity Low_complexity 1 28 0 228 135 0 0 chrX 73719326 73719363 -103254777 + (GAAA)n Simple_repeat Simple_repeat 4 40 0 759 287 69 24 chrX 73719955 73720202 -103253938 - MIR SINE MIR 0 262 5 909 270 62 18 chrX 73720719 73721089 -103253051 - L1ME3A LINE L1 -298 5872 5485 228 311 0 0 chrX 73721409 73721470 -103252670 + MIR3 SINE MIR 112 172 -36 291 98 20 39 chrX 73721988 73722039 -103252101 - MER4B LTR ERV1 -62 548 499 402 21 0 0 chrX 73722292 73722339 -103251801 + (CA)n Simple_repeat Simple_repeat 1 47 0 24 67 0 0 chrX 73723429 73723474 -103250666 + AT_rich Low_complexity Low_complexity 1 45 0 1228 167 144 26 chrX 73725210 73725516 -103248624 - MER2 DNA MER2_type -1 343 2 4384 175 81 20 chrX 73725698 73726660 -103247480 - L1MC3 LINE L1 0 7785 6765 541 226 27 14 chrX 73727053 73727199 -103246941 + MER103 DNA DNA 9 156 -10 342 376 33 17 chrX 73727263 73727444 -103246696 + MIR SINE MIR 13 196 -66 300 331 8 58 chrX 73727495 73727616 -103246524 + L2 LINE L2 3158 3272 0 2135 128 7 0 chrX 73730430 73730720 -103243420 - AluSx SINE Alu -17 295 4 2184 118 3 10 chrX 73730832 73731146 -103242994 + AluSx SINE Alu 1 312 0 21 36 0 0 chrX 73731775 73731803 -103242337 + AT_rich Low_complexity Low_complexity 1 28 0 459 93 0 27 chrX 73731811 73731886 -103242254 - L1PA8 LINE L1 -4 6168 6096 201 250 17 50 chrX 73732636 73732696 -103241444 + L2 LINE L2 2750 2807 -507 1208 178 9 5 chrX 73732699 73732912 -103241228 + MER20 DNA MER1_type 1 214 -5 227 382 65 29 chrX 73732940 73733110 -103241030 + L2 LINE L2 2811 2986 -286 202 381 0 16 chrX 73733188 73733251 -103240889 + L2 LINE L2 3224 3285 -28 218 290 87 0 chrX 73733381 73733450 -103240690 - L2 LINE L2 -786 2528 2454 544 249 102 40 chrX 73733596 73733773 -103240367 + MIR SINE MIR 72 259 -3 285 75 0 0 chrX 73733773 73733813 -103240327 + (TTA)n Simple_repeat Simple_repeat 3 42 0 195 200 0 0 chrX 73734075 73734110 -103240030 + L2 LINE L2 3267 3301 -12 24 0 0 0 chrX 73734114 73734138 -103240002 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 73735192 73735223 -103238917 + AT_rich Low_complexity Low_complexity 1 31 0 43663 42 3 1 chrX 73735223 73741358 -103232782 - L1PA4 LINE L1 -3 6152 4 6689 231 42 17 chrX 73741560 73743348 -103230792 + L1PA16 LINE L1 3681 5423 -743 207 69 0 0 chrX 73743348 73743377 -103230763 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6689 231 42 17 chrX 73743377 73743615 -103230525 + L1PA16 LINE L1 5423 5654 -512 2354 132 5 16 chrX 73743615 73743994 -103230146 - THE1C LTR MaLR 0 375 1 9380 122 38 43 chrX 73743996 73745582 -103228558 - THE1C-int LTR MaLR -2 1578 1 2369 130 5 11 chrX 73745582 73745959 -103228181 - THE1C LTR MaLR 0 375 1 6689 231 42 17 chrX 73745959 73746379 -103227761 + L1PA16 LINE L1 5653 6157 -9 361 313 73 7 chrX 73747051 73747201 -103226939 + MIR SINE MIR 47 206 -56 295 261 133 89 chrX 73747688 73747891 -103226249 - MIR SINE MIR -43 219 8 232 396 42 0 chrX 73748065 73748161 -103225979 - L2 LINE L2 -15 3257 3158 2606 149 29 0 chrX 73749173 73749589 -103224551 + MSTA LTR MaLR 1 428 0 2825 84 59 16 chrX 73750812 73750854 -103223286 - MLT2A1 LTR ERVL 0 444 405 228 67 0 0 chrX 73750854 73750884 -103223256 + (TA)n Simple_repeat Simple_repeat 1 30 0 2825 84 59 16 chrX 73750884 73751267 -103222873 - MLT2A1 LTR ERVL -39 405 1 9645 79 5 1 chrX 73751268 73752512 -103221628 - HERVL-A1 LTR ERVL -1 5653 4405 * 16477 84 19 6 chrX 73752505 73754697 -103219443 - HERVL-A1 LTR ERVL -2380 3274 1053 291 77 0 0 chrX 73754729 73754768 -103219372 - MLT2A2 LTR ERVL -2 451 413 * 770 84 0 9 chrX 73754766 73754873 -103219267 - MLT2A1 LTR ERVL -338 106 1 1913 167 74 52 chrX 73756413 73756650 -103217490 - MSTB1 LTR MaLR 0 432 181 2070 125 33 0 chrX 73756650 73756953 -103217187 + AluSq SINE Alu 1 313 0 1913 167 74 52 chrX 73756953 73757135 -103217005 - MSTB1 LTR MaLR -251 181 4 2055 150 8 40 chrX 73757170 73757544 -103216596 - THE1B LTR MaLR 0 364 3 10784 108 21 10 chrX 73757546 73759109 -103215031 - THE1B-int LTR MaLR 0 1580 1 2194 142 8 32 chrX 73759109 73759482 -103214658 - THE1B LTR MaLR 0 364 1 384 303 38 32 chrX 73759682 73759867 -103214273 + MIR SINE MIR 7 192 -70 21 0 0 0 chrX 73760793 73760814 -103213326 + AT_rich Low_complexity Low_complexity 1 21 0 10807 154 16 16 chrX 73762368 73765534 -103208606 - L1MA1 LINE L1 -6 6296 3127 25 0 0 0 chrX 73768183 73768208 -103205932 + AT_rich Low_complexity Low_complexity 1 25 0 202 352 83 0 chrX 73768846 73768954 -103205186 + L2 LINE L2 3155 3271 -1 365 0 22 0 chrX 73769369 73769414 -103204726 + (TTTTC)n Simple_repeat Simple_repeat 4 49 0 1813 130 4 11 chrX 73769420 73769696 -103204444 - AluSx SINE Alu -38 274 1 1224 189 56 7 chrX 73770039 73770343 -103203797 + MER33 DNA MER1_type 1 310 -14 809 255 35 35 chrX 73772771 73773002 -103201138 + MIR SINE MIR 3 233 -29 874 141 71 12 chrX 73774033 73774203 -103199937 - L1MA2 LINE L1 0 6304 6125 2162 159 32 48 chrX 73774542 73774977 -103199163 - MSTA LTR MaLR 0 428 1 204 40 0 0 chrX 73776193 73776218 -103197922 + (TA)n Simple_repeat Simple_repeat 1 25 0 1571 276 63 20 chrX 73776269 73776980 -103197160 - L1MCa LINE L1 -2260 4166 3425 3558 150 50 3 chrX 73776988 73777663 -103196477 - L1MA4A LINE L1 -4 6299 5593 22 35 0 0 chrX 73777680 73777709 -103196431 + AT_rich Low_complexity Low_complexity 1 29 0 4931 102 5 21 chrX 73777712 73778053 -103196087 - L1PA13 LINE L1 -4 6159 5814 2184 108 0 7 chrX 73778053 73778359 -103195781 - AluSq SINE Alu -9 304 1 4931 102 5 21 chrX 73778359 73778774 -103195366 - L1PA13 LINE L1 -349 5814 5415 2267 164 3 14 chrX 73778774 73779465 -103194675 - L1MA4A LINE L1 -696 5607 4920 * 3170 234 44 9 chrX 73779461 73780541 -103193599 - L1MCa LINE L1 -2999 3427 2309 1400 184 7 46 chrX 73780586 73780890 -103193250 - L1MA6 LINE L1 -74 6226 5935 748 133 0 8 chrX 73780891 73781019 -103193121 - L1MA3 LINE L1 0 7724 7598 3212 172 27 5 chrX 73781025 73781313 -103192827 - L1MA3 LINE L1 -221 7503 7223 333 0 0 0 chrX 73781313 73781350 -103192790 + (TG)n Simple_repeat Simple_repeat 2 38 0 3212 172 27 5 chrX 73781350 73781653 -103192487 - L1MA3 LINE L1 -501 7223 6899 310 127 16 16 chrX 73781669 73781732 -103192408 + (TA)n Simple_repeat Simple_repeat 2 64 0 1294 208 72 15 chrX 73781736 73782001 -103192139 - AluJo SINE Alu -32 280 1 9540 185 56 24 chrX 73782001 73782189 -103191951 - L1MA3 LINE L1 -743 6822 6642 312 27 0 0 chrX 73782189 73782226 -103191914 + (TG)n Simple_repeat Simple_repeat 2 38 0 9540 185 56 24 chrX 73782226 73783923 -103190217 - L1MA3 LINE L1 -923 6642 4933 1540 193 20 17 chrX 73783923 73784223 -103189917 - AluJo SINE Alu -11 301 1 9540 185 56 24 chrX 73784223 73784638 -103189502 - L1MA3 LINE L1 -2632 4933 4533 551 218 88 0 chrX 73784898 73785068 -103189072 - L1MA3 LINE L1 -3041 4524 4340 * 2503 30 0 0 chrX 73785059 73785355 -103188785 + L1HS LINE L1 5860 6155 0 189 107 0 0 chrX 73785355 73785383 -103188757 + (A)n Simple_repeat Simple_repeat 1 28 0 2755 226 30 4 chrX 73785413 73786125 -103188015 - L1MA3 LINE L1 -3215 4350 3621 19926 20 0 0 chrX 73786127 73789258 -103184882 - L1HS LINE L1 0 6155 3025 1764 237 61 18 chrX 73789257 73789881 -103184259 - L1MA3 LINE L1 -3935 3630 2980 * 5978 101 20 4 chrX 73789893 73791606 -103182534 - L1PA11 LINE L1 -2 7610 5876 15068 220 31 18 chrX 73791610 73796117 -103178023 - L1PA11 LINE L1 -1923 5661 7 2018 159 100 58 chrX 73796121 73796922 -103177218 - L1MCa LINE L1 -4104 2322 1405 646 298 178 6 chrX 73797358 73797690 -103176450 - L2 LINE L2 0 3313 2925 1606 74 5 0 chrX 73798643 73798858 -103175282 + L1PA7 LINE L1 5932 6147 -7 23 33 0 0 chrX 73802788 73802818 -103171322 + AT_rich Low_complexity Low_complexity 1 30 0 6997 66 8 0 chrX 73803207 73804533 -103169607 + L1PA8 LINE L1 4840 6172 0 2150 133 14 23 chrX 73805847 73806199 -103167941 - THE1A LTR MaLR 0 355 7 598 90 11 22 chrX 73806197 73806286 -103167854 - THE1B LTR MaLR -276 88 1 * 1561 91 14 0 chrX 73806286 73806506 -103167634 - THE1C-int LTR MaLR 0 1580 1358 6207 109 1 54 chrX 73806506 73807487 -103166653 - THE1C-int LTR MaLR -651 929 1 2490 129 5 0 chrX 73807487 73807860 -103166280 - THE1C LTR MaLR 0 375 1 3863 162 25 4 chrX 73808586 73809310 -103164830 + L1MA8 LINE L1 5541 6279 -12 201 333 0 0 chrX 73809582 73809636 -103164504 - L2 LINE L2 -6 3266 3213 318 26 0 0 chrX 73809666 73809705 -103164435 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chrX 73809750 73809778 -103164362 + AT_rich Low_complexity Low_complexity 1 28 0 1363 115 19 19 chrX 73810419 73810628 -103163512 + L1PB4 LINE L1 5945 6153 -3 890 142 1 15 chrX 73810505 73810657 -103163483 + L1PB4 LINE L1 6031 6298 -1 1379 158 4 8 chrX 73811600 73811860 -103162280 + L1MA8 LINE L1 6028 6286 -5 1521 185 58 22 chrX 73812028 73812341 -103161799 + MLT1D LTR MaLR 140 463 -42 1118 127 11 0 chrX 73812854 73813043 -103161097 - L1MA2 LINE L1 -1 6303 6113 10342 164 25 13 chrX 73813059 73814556 -103159584 - L1MA2 LINE L1 -2 6302 4825 2274 106 0 3 chrX 73814556 73814868 -103159272 - AluSq SINE Alu -2 311 1 10342 164 25 13 chrX 73814868 73816487 -103157653 - L1MA2 LINE L1 -1479 4825 3145 5730 207 31 12 chrX 73816493 73818024 -103156116 + L1PA16 LINE L1 3863 5441 -725 6269 204 3 15 chrX 73818024 73820243 -103153897 + L1PA15 LINE L1 3943 6155 -10 5730 207 31 12 chrX 73820243 73820924 -103153216 + L1PA16 LINE L1 5441 6107 -59 1753 263 53 65 chrX 73821003 73821843 -103152297 + L1MC3 LINE L1 2962 3790 -2356 216 67 0 0 chrX 73821843 73821873 -103152267 + (CA)n Simple_repeat Simple_repeat 2 31 0 1753 263 53 65 chrX 73821873 73822021 -103152119 + L1MC3 LINE L1 3790 3938 -2208 343 0 0 0 chrX 73822046 73822088 -103152052 + L1PA3 LINE L1 6111 6152 -3 10629 234 30 22 chrX 73822137 73825792 -103148348 - L1PA13 LINE L1 -1860 4937 1236 450 252 0 0 chrX 73825956 73826071 -103148069 + L1MC3 LINE L1 5125 5239 -907 402 156 32 82 chrX 73826072 73826188 -103147952 - L1MC4 LINE L1 -482 5852 5745 1904 224 86 40 chrX 73826191 73826251 -103147889 + L1MC3 LINE L1 5255 5311 -2474 2193 125 0 0 chrX 73826251 73826554 -103147586 + AluSq SINE Alu 1 303 -10 1904 224 86 40 chrX 73826554 73827159 -103146981 + L1MC3 LINE L1 5311 5950 -1835 522 205 24 8 chrX 73827172 73827299 -103146841 + L1MC3 LINE L1 7574 7702 -83 3243 222 95 10 chrX 73827322 73828098 -103146042 - MER21B LTR ERV1 -21 842 1 342 123 0 0 chrX 73828101 73828158 -103145982 + L1MD3 LINE L1 7915 7971 -24 31 26 0 0 chrX 73828211 73828249 -103145891 + AT_rich Low_complexity Low_complexity 1 38 0 2303 172 34 5 chrX 73828575 73828993 -103145147 - MSTB1 LTR MaLR 0 432 3 254 339 101 0 chrX 73829475 73829584 -103144556 + L2 LINE L2 3153 3272 0 22 56 0 0 chrX 73830979 73831015 -103143125 + AT_rich Low_complexity Low_complexity 1 36 0 200 296 0 9 chrX 73832428 73832543 -103141597 + CT-rich Low_complexity Low_complexity 2 115 0 1670 218 73 121 chrX 73832969 73833393 -103140747 + L1M4 LINE L1 4002 4368 -1778 1689 52 0 0 chrX 73833393 73833604 -103140536 - L1PA5 LINE L1 -5 6149 5939 1670 218 73 121 chrX 73833604 73834003 -103140137 + L1M4 LINE L1 4368 4785 -1361 964 49 0 0 chrX 73834017 73834140 -103140000 - L1PA4 LINE L1 -189 5966 5844 1677 34 0 5 chrX 73834140 73834348 -103139792 + L1PA4 LINE L1 5948 6155 0 1786 244 29 3 chrX 73834351 73834893 -103139247 + L1M4 LINE L1 4793 5350 -810 6444 79 8 3 chrX 73834900 73836024 -103138116 - L1PA10 LINE L1 -10 6158 5021 263 333 83 0 chrX 73836039 73836159 -103137981 - L2 LINE L2 -937 2377 2248 3237 172 43 10 chrX 73837178 73837853 -103136287 - L1MC1 LINE L1 -6 6327 5631 181 324 52 62 chrX 73838143 73838353 -103135787 + L2 LINE L2 2566 2773 -541 217 278 0 0 chrX 73838606 73838660 -103135480 + L2 LINE L2 3214 3267 -5 262 308 115 24 chrX 73838690 73838842 -103135298 + MIR SINE MIR 16 188 -62 204 40 0 0 chrX 73838899 73838924 -103135216 + (ATG)n Simple_repeat Simple_repeat 3 27 0 295 265 53 73 chrX 73839987 73840104 -103134036 - L2 LINE L2 0 3272 3157 1003 154 33 16 chrX 73840104 73840286 -103133854 - MER5A DNA MER1_type -3 186 2 295 265 53 73 chrX 73840286 73840319 -103133821 - L2 LINE L2 -115 3157 3125 258 374 16 8 chrX 73841898 73842021 -103132119 - MIR3 SINE MIR -81 127 4 24 85 0 0 chrX 73842129 73842188 -103131952 + AT_rich Low_complexity Low_complexity 1 59 0 216 0 0 0 chrX 73843388 73843412 -103130728 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 299 263 10 10 chrX 73843621 73843720 -103130420 - L1M4 LINE L1 -1768 4378 4280 7884 12 0 0 chrX 73843730 73845139 -103129001 - L1PA2 LINE L1 0 6155 4747 26297 25 1 0 chrX 73845139 73848286 -103125854 + L1PA2 LINE L1 1587 4737 -1409 2625 220 26 2 chrX 73848313 73848813 -103125327 + MLT2B3 LTR ERVL 1 487 -67 315 0 0 0 chrX 73848813 73848848 -103125292 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 384 22 0 0 chrX 73848847 73848892 -103125248 + (TA)n Simple_repeat Simple_repeat 1 45 0 2625 220 26 2 chrX 73848848 73848932 -103125208 + MLT2B3 LTR ERVL 487 554 0 196 298 135 10 chrX 73848932 73849036 -103125104 - MIR SINE MIR -60 202 86 428 269 198 16 chrX 73849167 73849349 -103124791 + MIR SINE MIR 3 217 -45 276 154 0 0 chrX 73851588 73851640 -103122500 + (CA)n Simple_repeat Simple_repeat 1 52 0 280 71 0 24 chrX 73852070 73852112 -103122028 + HERVL-A2 LTR ERVL 5614 5654 0 2110 166 35 31 chrX 73852112 73852661 -103121479 + MLT2A2 LTR ERVL 1 554 0 34 0 0 0 chrX 73856048 73856082 -103118058 + AT_rich Low_complexity Low_complexity 1 34 0 396 0 0 0 chrX 73858075 73858119 -103116021 + (TG)n Simple_repeat Simple_repeat 2 45 0 2081 97 3 39 chrX 73858830 73859323 -103114817 + AluSg SINE Alu 1 482 0 23 0 0 0 chrX 73859538 73859561 -103114579 + AT_rich Low_complexity Low_complexity 1 23 0 2859 139 26 0 chrX 73860087 73860548 -103113592 - L1PA15 LINE L1 -7 6158 5686 1338 146 39 0 chrX 73860555 73860761 -103113379 + AluSx SINE Alu 7 220 -92 4048 185 28 64 chrX 73860771 73861645 -103112495 - L1PA13 LINE L1 -3929 2868 2026 2444 11 0 0 chrX 73861645 73861922 -103112218 - L1PA3 LINE L1 0 6155 5879 4048 185 28 64 chrX 73861922 73862397 -103111743 - L1PA13 LINE L1 -4771 2026 1535 1067 239 14 0 chrX 73862396 73862614 -103111526 - L1PA13 LINE L1 -6565 222 2 * 222 250 0 18 chrX 73862619 73862675 -103111465 + L2 LINE L2 3006 3060 -253 1932 216 24 28 chrX 73862977 73863436 -103110704 - MSTB2 LTR MaLR 0 457 1 478 310 93 31 chrX 73863729 73863955 -103110185 + MIR SINE MIR 13 252 -10 21 0 0 0 chrX 73864805 73864826 -103109314 + AT_rich Low_complexity Low_complexity 1 21 0 667 283 22 5 chrX 73865781 73865965 -103108175 - MIR SINE MIR 0 262 76 1754 152 60 41 chrX 73866229 73866597 -103107543 - THE1C LTR MaLR 0 375 1 1264 219 133 8 chrX 73866821 73867173 -103106967 + MSTD LTR MaLR 1 396 0 1334 218 16 6 chrX 73867175 73867496 -103106644 + MSTD-int LTR MaLR 2 325 -1410 2248 78 79 5 chrX 73867496 73867863 -103106277 - LTR7 LTR ERV1 0 450 1 2546 254 22 67 chrX 73867863 73868687 -103105453 + MSTD-int LTR MaLR 321 1107 -628 225 146 24 0 chrX 73868694 73868733 -103105407 + MSTB2 LTR MaLR 303 342 -54 5595 119 27 6 chrX 73868733 73869323 -103104817 - MER4D LTR ERV1 0 872 257 5389 53 31 0 chrX 73869323 73870023 -103104117 + LTR30 LTR ERV1 1 722 0 5595 119 27 6 chrX 73870023 73870286 -103103854 - MER4D LTR ERV1 -615 257 1 330 158 0 0 chrX 73870287 73870344 -103103796 + MSTB2 LTR MaLR 401 457 0 29 60 0 0 chrX 73870715 73870765 -103103375 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chrX 73872331 73872362 -103101778 + AT_rich Low_complexity Low_complexity 1 31 0 1093 202 4 25 chrX 73872364 73872607 -103101533 + AluJo SINE Alu 74 311 -1 1224 221 97 30 chrX 73872963 73873130 -103101010 - THE1B LTR MaLR -2 362 208 267 31 0 0 chrX 73873130 73873162 -103100978 + (GA)n Simple_repeat Simple_repeat 2 33 0 1224 221 97 30 chrX 73873162 73873333 -103100807 - THE1B LTR MaLR -156 208 1 9527 138 7 38 chrX 73873338 73874960 -103099180 - MSTA-int LTR MaLR -5 1575 3 1562 165 176 22 chrX 73874962 73875331 -103098809 - MSTA LTR MaLR 0 428 3 22 35 0 0 chrX 73875452 73875481 -103098659 + AT_rich Low_complexity Low_complexity 1 29 0 2873 117 19 82 chrX 73875607 73875638 -103098502 + L1MA4A LINE L1 5752 5783 -520 525 32 0 0 chrX 73875638 73875701 -103098439 + (TG)n Simple_repeat Simple_repeat 2 64 0 2873 117 19 82 chrX 73875701 73875872 -103098268 + L1MA4A LINE L1 5783 5963 -340 2392 78 3 0 chrX 73875872 73876167 -103097973 + AluY SINE Alu 1 296 -15 2873 117 19 82 chrX 73876167 73876299 -103097841 + L1MA4A LINE L1 5963 6102 -201 1596 214 3 3 chrX 73876299 73876598 -103097542 + AluJo SINE Alu 1 299 -13 2873 117 19 82 chrX 73876598 73876850 -103097290 + L1MA4A LINE L1 6102 6303 0 1836 246 66 24 chrX 73877784 73878455 -103095685 + L1ME1 LINE L1 5476 6333 -1 362 383 0 13 chrX 73880509 73880658 -103093482 + MIR SINE MIR 46 192 -70 273 119 0 0 chrX 73880767 73880809 -103093331 + (CACCAT)n Simple_repeat Simple_repeat 6 47 0 483 277 25 13 chrX 73881317 73881476 -103092664 + HUERS-P1 LTR ERV1 6103 6263 0 1844 203 100 97 chrX 73881476 73882146 -103091994 + LTR8A LTR ERV1 1 672 -55 227 245 0 0 chrX 73883085 73883138 -103091002 + L2 LINE L2 3261 3313 0 17672 188 11 16 chrX 73884142 73885752 -103088388 + L1PA14 LINE L1 1546 3162 -2999 180 0 0 0 chrX 73885752 73885772 -103088368 + (CAA)n Simple_repeat Simple_repeat 2 21 0 17672 188 11 16 chrX 73885772 73887926 -103086214 + L1PA14 LINE L1 3162 5299 -862 2349 90 0 7 chrX 73887926 73888226 -103085914 + AluY SINE Alu 1 298 -13 17672 188 11 16 chrX 73888226 73889010 -103085130 + L1PA14 LINE L1 5299 6085 -76 30 27 0 0 chrX 73889010 73889047 -103085093 + AT_rich Low_complexity Low_complexity 1 37 0 552 306 75 5 chrX 73889047 73889233 -103084907 + MIR SINE MIR 56 254 -8 314 333 140 25 chrX 73889514 73889799 -103084341 + L2 LINE L2 2343 2660 -654 321 344 74 17 chrX 73890094 73890324 -103083816 + L2 LINE L2 2818 3060 -212 182 302 0 38 chrX 73890474 73890527 -103083613 + L2 LINE L2 3209 3259 -13 392 259 0 53 chrX 73893449 73893580 -103080560 + L2 LINE L2 3159 3282 -31 189 359 0 51 chrX 73893932 73894010 -103080130 - L2 LINE L2 -2 3270 3197 193 353 0 15 chrX 73894016 73894084 -103080056 + L2 LINE L2 3156 3222 -50 24 53 0 0 chrX 73896640 73896678 -103077462 + AT_rich Low_complexity Low_complexity 1 38 0 2157 124 0 3 chrX 73897069 73897367 -103076773 - AluSx SINE Alu -15 297 1 207 0 0 0 chrX 73898157 73898180 -103075960 + (T)n Simple_repeat Simple_repeat 1 23 0 1586 239 127 31 chrX 73898811 73898950 -103075190 + MLT1E2 LTR MaLR 57 181 -445 1805 173 3 3 chrX 73898950 73899257 -103074883 + AluJo SINE Alu 1 307 -5 1586 239 127 31 chrX 73899257 73899637 -103074503 + MLT1E2 LTR MaLR 181 626 0 2072 154 3 3 chrX 73900014 73900365 -103073775 + L1MB2 LINE L1 5811 6161 -10 587 167 0 0 chrX 73901004 73901118 -103073022 + L1MB2 LINE L1 6044 6157 -14 342 0 0 0 chrX 73901128 73901166 -103072974 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 210 306 133 10 chrX 73901350 73901448 -103072692 + MIR SINE MIR 26 135 -127 1295 94 139 0 chrX 73902677 73902879 -103071261 + MER30 DNA MER1_type 1 230 0 609 52 0 0 chrX 73903570 73903647 -103070493 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 745 237 23 47 chrX 73905596 73905811 -103068329 - MER63A DNA MER1_type 0 210 1 242 354 88 52 chrX 73906027 73906219 -103067921 + MIR3 SINE MIR 8 206 -2 2082 140 0 0 chrX 73907639 73907932 -103066208 - AluSx SINE Alu -19 293 1 462 216 270 27 chrX 73908298 73908446 -103065694 - MER5A DNA MER1_type -5 184 1 1712 180 33 27 chrX 73908673 73909040 -103065100 + LTR52 LTR ERVL 51 419 -2 25 90 0 0 chrX 73909480 73909547 -103064593 + AT_rich Low_complexity Low_complexity 1 67 0 264 203 17 17 chrX 73909590 73909649 -103064491 - MIR SINE MIR -23 239 181 292 230 54 0 chrX 73909729 73909803 -103064337 - MIR SINE MIR -101 161 84 1329 182 0 55 chrX 73909841 73910116 -103064024 - AluJo SINE Alu -52 260 1 1470 135 44 47 chrX 73910159 73910288 -103063852 + MER33 DNA MER1_type 5 133 -2452 1782 138 3 45 chrX 73910288 73910610 -103063530 + AluSg SINE Alu 3 312 0 1470 135 44 47 chrX 73910610 73910796 -103063344 + MER33 DNA MER1_type 133 322 -2 227 320 39 0 chrX 73911946 73912024 -103062116 + MIR SINE MIR 104 184 -78 180 200 0 0 chrX 73912036 73912076 -103062064 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 4608 116 8 31 chrX 73912429 73913195 -103060945 + L1PA16 LINE L1 5417 6164 -2 717 151 33 0 chrX 73913481 73913657 -103060483 + L1MB1 LINE L1 5830 6167 -1 391 299 31 8 chrX 73913760 73913887 -103060253 - MIR3 SINE MIR -47 161 32 327 277 60 12 chrX 73914867 73914950 -103059190 + MER5B DNA MER1_type 4 90 -88 1149 115 86 5 chrX 73915981 73916190 -103057950 - L1MA8 LINE L1 -1 6290 6065 523 236 7 197 chrX 73916738 73916892 -103057248 - MIR SINE MIR -15 247 178 955 120 54 0 chrX 73916892 73917059 -103057081 - L1MA6 LINE L1 0 6300 6125 523 236 7 197 chrX 73917059 73917209 -103056931 - MIR SINE MIR -84 178 1 534 315 11 33 chrX 73917232 73917416 -103056724 - MIR3 SINE MIR -9 199 20 338 252 87 0 chrX 73917621 73917724 -103056416 - MIR SINE MIR -76 186 75 415 256 139 0 chrX 73918769 73918906 -103055234 - MIR SINE MIR -27 235 80 574 248 248 5 chrX 73919557 73919759 -103054381 - MIR SINE MIR 0 262 12 2186 140 51 0 chrX 73919985 73920357 -103053783 - L1MA6 LINE L1 -4 6296 5906 26 0 0 0 chrX 73920486 73920512 -103053628 + AT_rich Low_complexity Low_complexity 1 26 0 1772 161 3 7 chrX 73921803 73922095 -103052045 - AluJb SINE Alu -21 291 1 3185 26 5 0 chrX 73922492 73922871 -103051269 - L1PA2 LINE L1 0 6155 5775 3072 12 0 0 chrX 73922871 73923217 -103050923 + L1PA2 LINE L1 5419 5764 -391 950 188 19 46 chrX 73923343 73923604 -103050536 - L1MA7 LINE L1 0 6291 6038 190 372 164 26 chrX 73924283 73924514 -103049626 - L2 LINE L2 -15 3257 2995 363 204 75 21 chrX 73924516 73924609 -103049531 - U6 snRNA snRNA -1 106 9 11769 168 23 41 chrX 73925065 73926218 -103047922 + L1M1 LINE L1 1515 2688 -4877 3907 151 28 38 chrX 73926218 73927011 -103047129 + LTR1 LTR ERV1 1 785 0 11769 168 23 41 chrX 73927011 73928273 -103045867 + L1M1 LINE L1 2688 3866 -3699 279 0 0 0 chrX 73928273 73928304 -103045836 + (TA)n Simple_repeat Simple_repeat 1 31 0 11769 168 23 41 chrX 73928304 73928980 -103045160 + L1M1 LINE L1 3866 4553 -3012 464 255 50 20 chrX 73928980 73929180 -103044960 - L1P LINE L1 -2862 3284 3079 2136 211 65 18 chrX 73929207 73929776 -103044364 - L1MC2 LINE L1 0 6344 5749 681 240 120 26 chrX 73929787 73930292 -103043848 - LTR50 LTR ERVL -105 690 1 2642 201 18 55 chrX 73930292 73930650 -103043490 - L1MC2 LINE L1 -581 5763 5393 5076 34 2 14 chrX 73930650 73931275 -103042865 - L1PA4 LINE L1 -3 6152 5536 2642 201 18 55 chrX 73931275 73931375 -103042765 - L1MC2 LINE L1 -951 5393 5291 2232 105 0 0 chrX 73931375 73931669 -103042471 - AluSg SINE Alu -16 294 1 2642 201 18 55 chrX 73931669 73932386 -103041754 - L1MC2 LINE L1 -1053 5291 4624 2014 204 21 50 chrX 73932732 73933006 -103041134 + MLT1D LTR MaLR 34 289 -216 1110 160 11 0 chrX 73933006 73933194 -103040946 + L1PA16 LINE L1 5968 6157 -9 2014 204 21 50 chrX 73933194 73933404 -103040736 + MLT1D LTR MaLR 289 504 -1 205 143 0 0 chrX 73937750 73937785 -103036355 - L2 LINE L2 0 3313 3279 829 263 9 31 chrX 73938207 73938431 -103035709 - MIR SINE MIR 0 262 44 921 181 62 0 chrX 73938829 73939022 -103035118 + MER3 DNA MER1_type 2 206 -3 384 295 32 45 chrX 73939579 73939735 -103034405 - MER63A DNA MER1_type -12 198 45 21 0 0 0 chrX 73940267 73940288 -103033852 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chrX 73940541 73940575 -103033565 + AT_rich Low_complexity Low_complexity 1 34 0 2314 166 31 7 chrX 73940970 73941386 -103032754 - MSTB LTR MaLR 0 426 1 8844 177 11 25 chrX 73941386 73943060 -103031080 - MSTB-int LTR MaLR 0 1651 1 2259 172 24 7 chrX 73943060 73943479 -103030661 - MSTB LTR MaLR 0 426 1 7727 252 67 85 chrX 73943972 73948318 -103025822 + L1PB4 LINE L1 65 4487 -2371 1226 207 0 52 chrX 73948318 73948620 -103025520 + AluJo SINE Alu 26 313 0 7727 252 67 85 chrX 73948620 73948900 -103025240 + L1PB4 LINE L1 4487 4770 -2088 1587 140 106 34 chrX 73948900 73949250 -103024890 + THE1C LTR MaLR 1 375 0 8835 140 41 28 chrX 73949250 73950719 -103023421 + THE1C-int LTR MaLR 1 1493 -87 2295 93 3 0 chrX 73950719 73951029 -103023111 + AluY SINE Alu 1 311 0 8835 140 41 28 chrX 73951029 73951119 -103023021 + THE1C-int LTR MaLR 1493 1580 0 1800 143 70 20 chrX 73951119 73951476 -103022664 + THE1C LTR MaLR 1 375 0 7727 252 67 85 chrX 73951476 73953088 -103021052 + L1PB4 LINE L1 4767 6494 -364 201 167 0 0 chrX 73953088 73953124 -103021016 + (TA)n Simple_repeat Simple_repeat 2 37 0 258 98 33 16 chrX 73953155 73953216 -103020924 + (TA)n Simple_repeat Simple_repeat 1 62 0 1647 196 34 0 chrX 73953505 73953831 -103020309 + L1PB4 LINE L1 6484 6820 -38 623 221 0 8 chrX 73954404 73954535 -103019605 - FLAM_A SINE Alu -5 137 8 301 152 30 0 chrX 73954780 73954846 -103019294 - L1PB4 LINE L1 -8 6148 6081 411 245 68 73 chrX 73955661 73955853 -103018287 - MIR SINE MIR -44 218 28 398 155 78 19 chrX 73957654 73957757 -103016383 - L1M4 LINE L1 -901 5245 5137 387 124 38 222 chrX 73958332 73958517 -103015623 - L1MA7 LINE L1 0 6291 6141 * 546 118 0 0 chrX 73958505 73958581 -103015559 + L1MA9 LINE L1 5857 5932 -380 22 0 0 0 chrX 73958687 73958709 -103015431 + AT_rich Low_complexity Low_complexity 1 22 0 2056 99 3 3 chrX 73959542 73959862 -103014278 - AluSx SINE Alu 0 320 1 708 230 62 5 chrX 73960373 73960582 -103013558 - L1MC2 LINE L1 -1 6623 6403 6172 231 31 16 chrX 73960589 73962164 -103011976 - L1MC2 LINE L1 -346 6278 4727 1571 155 55 0 chrX 73962164 73962435 -103011705 - L1PB4 LINE L1 -2 6154 5869 6172 231 31 16 chrX 73962435 73963025 -103011115 - L1MC2 LINE L1 -1897 4727 4147 2293 95 0 0 chrX 73963025 73963319 -103010821 - AluSc SINE Alu -13 296 3 6172 231 31 16 chrX 73963319 73964413 -103009727 - L1MC2 LINE L1 -2477 4147 2965 41 0 0 0 chrX 73964413 73964454 -103009686 + AT_rich Low_complexity Low_complexity 1 41 0 714 217 30 41 chrX 73964461 73964694 -103009446 - L1MC2 LINE L1 -4187 2239 2042 5143 133 4 5 chrX 73964700 73965503 -103008637 - L1PB3 LINE L1 0 6154 5353 9921 198 25 25 chrX 73965507 73968924 -103005216 - L1PB1 LINE L1 -1 6150 2747 2663 139 2 2 chrX 73968924 73969354 -103004786 - L1PA15 LINE L1 -7 6158 5729 4982 198 5 20 chrX 73969354 73970431 -103003709 - L1P LINE L1 -1916 4230 3171 2587 216 14 78 chrX 73970431 73971260 -103002880 + L1P LINE L1 2382 3157 -2989 1849 192 23 30 chrX 73971273 73971296 -103002844 - L1PB1 LINE L1 -3402 2744 2722 1970 146 41 36 chrX 73971296 73971658 -103002482 + THE1B LTR MaLR 1 364 0 1849 192 23 30 chrX 73971658 73972061 -103002079 - L1PB1 LINE L1 -3424 2722 2321 3498 220 83 51 chrX 73972062 73972120 -103002020 - L1MCb LINE L1 -4432 2132 2077 1822 147 13 29 chrX 73972120 73972434 -103001706 + AluJb SINE Alu 1 309 -3 3498 220 83 51 chrX 73972434 73974453 -102999687 - L1MCb LINE L1 -4487 2077 1 405 295 49 78 chrX 73974969 73975143 -102998997 - MIR SINE MIR -21 241 74 2265 93 3 10 chrX 73975143 73975443 -102998697 + AluSq SINE Alu 1 298 -15 405 295 49 78 chrX 73975443 73975512 -102998628 - MIR SINE MIR -188 74 5 274 123 62 77 chrX 73977187 73977252 -102996888 - L1ME LINE L1 -458 5663 5600 25 31 0 0 chrX 73978334 73978366 -102995774 + AT_rich Low_complexity Low_complexity 1 32 0 1289 38 12 0 chrX 73978577 73978737 -102995403 + L1PA5 LINE L1 5991 6152 -2 1618 187 31 96 chrX 73979146 73979452 -102994688 - MLT1B LTR MaLR 0 390 117 1207 86 29 0 chrX 73979452 73979627 -102994513 - L1MA1 LINE L1 0 6302 6123 1618 187 31 96 chrX 73979627 73979737 -102994403 - MLT1B LTR MaLR -273 117 1 838 196 5 55 chrX 73981952 73982171 -102991969 - MER3 DNA MER1_type 0 209 2 185 267 100 78 chrX 73982224 73982314 -102991826 + L2 LINE L2 2327 2418 -896 334 327 67 10 chrX 73982337 73982441 -102991699 - L2 LINE L2 -19 3294 3185 247 409 7 22 chrX 73982522 73982659 -102991481 + L2 LINE L2 2560 2694 -620 6100 69 1 0 chrX 73982901 73983686 -102990454 - L1PA7 LINE L1 0 6154 5369 2061 121 0 0 chrX 73984427 73984734 -102989406 + AluSc SINE Alu 3 309 0 1547 179 76 13 chrX 73985011 73985312 -102988828 + MSTA LTR MaLR 3 322 -106 389 286 146 50 chrX 73985459 73985760 -102988380 + Charlie7 DNA MER1_type 12 341 -2271 419 211 73 0 chrX 73985795 73985904 -102988236 + Charlie7 DNA MER1_type 418 534 -2078 23 78 0 0 chrX 73985961 73986012 -102988128 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chrX 73986224 73986263 -102987877 + AT_rich Low_complexity Low_complexity 1 39 0 608 261 103 8 chrX 73986992 73987226 -102986914 + MIR SINE MIR 6 261 -1 359 288 113 67 chrX 73988414 73988654 -102985486 - MIR SINE MIR -11 251 1 287 83 14 42 chrX 73989274 73989346 -102984794 + (TA)n Simple_repeat Simple_repeat 1 70 0 237 65 0 0 chrX 73989345 73989376 -102984764 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1395 174 93 4 chrX 73989376 73989635 -102984505 - AluJo SINE Alu -30 282 1 402 114 0 0 chrX 73989880 73989950 -102984190 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 1441 171 53 33 chrX 73990008 73990307 -102983833 + AluJo SINE Alu 1 305 -7 387 0 0 0 chrX 73991296 73991339 -102982801 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 37 0 0 chrX 73991338 73991365 -102982775 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 23 54 0 0 chrX 73991812 73991849 -102982291 + AT_rich Low_complexity Low_complexity 1 37 0 668 161 290 0 chrX 73994300 73994462 -102979678 - MER3 DNA MER1_type 0 209 1 1666 183 3 3 chrX 73995263 73995553 -102978587 - AluJb SINE Alu -22 290 1 417 264 0 9 chrX 73995666 73995772 -102978368 + MIR3 SINE MIR 101 205 -3 27 0 0 0 chrX 73995780 73995807 -102978333 + AT_rich Low_complexity Low_complexity 1 27 0 1763 143 179 8 chrX 73996892 73997255 -102976885 - MSTA LTR MaLR -3 425 1 8488 187 20 13 chrX 73997255 73997590 -102976550 - MSTA-int LTR MaLR 0 1651 1320 2458 74 3 6 chrX 73997590 73997902 -102976238 - AluY SINE Alu 0 311 1 8488 187 20 13 chrX 73997902 73999206 -102974934 - MSTA-int LTR MaLR -331 1320 1 1904 151 127 16 chrX 73999206 73999591 -102974549 - MSTA LTR MaLR 0 428 1 231 224 119 15 chrX 74000212 74000279 -102973861 - MIR SINE MIR -64 144 71 26 30 0 0 chrX 74000477 74000510 -102973630 + AT_rich Low_complexity Low_complexity 1 33 0 292 277 76 94 chrX 74001303 74001527 -102972613 + MIR SINE MIR 31 250 -12 26 30 0 0 chrX 74001959 74001992 -102972148 + AT_rich Low_complexity Low_complexity 1 33 0 1326 33 6 16 chrX 74003340 74003522 -102970618 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 916 107 7 7 chrX 74003523 74003672 -102970468 + (TTCC)n Simple_repeat Simple_repeat 4 152 0 1829 129 32 32 chrX 74003683 74003992 -102970148 - AluSx SINE Alu -3 309 1 507 281 22 28 chrX 74004264 74004442 -102969698 - MIR3 SINE MIR -15 193 17 180 0 0 0 chrX 74004623 74004643 -102969497 + (TC)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chrX 74004642 74004662 -102969478 + (CA)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chrX 74005170 74005207 -102968933 + AT_rich Low_complexity Low_complexity 1 37 0 219 299 0 72 chrX 74005544 74005641 -102968499 + MIR SINE MIR 82 171 -91 22 0 0 0 chrX 74006685 74006707 -102967433 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chrX 74007909 74007952 -102966188 + AT_rich Low_complexity Low_complexity 1 43 0 2083 67 21 21 chrX 74008350 74008634 -102965506 - AluY SINE Alu -17 294 11 2957 151 14 68 chrX 74009174 74009817 -102964323 + L1MB7 LINE L1 5564 6171 -13 21 36 0 0 chrX 74010435 74010463 -102963677 + AT_rich Low_complexity Low_complexity 1 28 0 456 301 46 12 chrX 74010564 74010737 -102963403 + L3 LINE CR1 276 454 -1123 318 306 63 0 chrX 74011559 74011670 -102962470 + L3b LINE CR1 1314 1431 -152 27 49 0 0 chrX 74013504 74013545 -102960595 + AT_rich Low_complexity Low_complexity 1 41 0 2709 124 43 27 chrX 74013560 74014076 -102960064 - L1MA3 LINE L1 0 6305 5782 222 220 0 0 chrX 74014076 74014135 -102960005 + (TA)n Simple_repeat Simple_repeat 2 60 0 263 295 132 8 chrX 74014515 74014644 -102959496 + MIR3 SINE MIR 58 202 -6 269 304 72 16 chrX 74016194 74016319 -102957821 + MIR SINE MIR 131 262 0 243 0 0 0 chrX 74016741 74016768 -102957372 + (T)n Simple_repeat Simple_repeat 1 27 0 239 371 18 0 chrX 74016790 74016960 -102957180 + L1PA12 LINE L1 7 179 -7402 2311 102 0 3 chrX 74016989 74017292 -102956848 + AluSx SINE Alu 1 302 -10 650 102 0 0 chrX 74017292 74017380 -102956760 + L1PA14 LINE L1 2568 2655 -4194 350 158 0 0 chrX 74017382 74017439 -102956701 + L1PA14 LINE L1 5205 5261 -1588 344 280 25 42 chrX 74017439 74017557 -102956583 + L1M2 LINE L1 209 324 -6525 5257 143 10 10 chrX 74017577 74019015 -102955125 + L1PA14 LINE L1 5407 6858 -6 398 132 13 0 chrX 74019045 74019121 -102955019 + (TCCA)n Simple_repeat Simple_repeat 4 80 0 22 0 0 0 chrX 74019944 74019966 -102954174 + AT_rich Low_complexity Low_complexity 1 22 0 520 165 11 0 chrX 74019966 74020057 -102954083 - L1PA16 LINE L1 -9 6157 6066 29 28 0 0 chrX 74020217 74020253 -102953887 + AT_rich Low_complexity Low_complexity 1 36 0 265 258 106 4 chrX 74021815 74021947 -102952193 - MIR3 SINE MIR -50 158 40 28 29 0 0 chrX 74022142 74022177 -102951963 + AT_rich Low_complexity Low_complexity 1 35 0 556 184 0 0 chrX 74022177 74022286 -102951854 - L1MA10 LINE L1 -7 6327 6219 4623 170 30 37 chrX 74023087 74024104 -102950036 - L1MA10 LINE L1 -1 6333 5325 337 204 11 11 chrX 74024114 74024202 -102949938 - L1PB4 LINE L1 0 6156 6069 1348 221 10 0 chrX 74024205 74024499 -102949641 - L1MA10 LINE L1 -845 5301 5005 1971 184 22 5 chrX 74024518 74024888 -102949252 - L1PB4 LINE L1 -12 6144 5769 17906 178 17 9 chrX 74024889 74031899 -102942241 - L1PA14 LINE L1 -2 7597 5 6141 196 18 31 chrX 74031906 74033068 -102941072 - L1PB4 LINE L1 -373 5783 4608 9267 178 6 24 chrX 74033068 74034477 -102939663 - L1PA13 LINE L1 -8 6155 4812 2167 124 0 3 chrX 74034477 74034791 -102939349 - AluSq SINE Alu 0 313 1 9267 178 6 24 chrX 74034791 74036045 -102938095 - L1PA13 LINE L1 -1351 4812 3536 6141 196 18 31 chrX 74036045 74036670 -102937470 - L1PB4 LINE L1 -1548 4608 3977 1604 141 186 18 chrX 74036670 74037004 -102937136 + MSTA LTR MaLR 1 390 -38 6141 196 18 31 chrX 74037004 74037854 -102936286 - L1PB4 LINE L1 -2179 3977 3113 239 0 0 31 chrX 74037854 74037886 -102936254 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6141 196 18 31 chrX 74037886 74038280 -102935860 - L1PB4 LINE L1 -3043 3113 2715 515 187 89 0 chrX 74038252 74038375 -102935765 - L1 LINE L1 -1140 5006 4873 * 324 70 0 0 chrX 74038428 74038471 -102935669 + (TG)n Simple_repeat Simple_repeat 1 43 0 320 345 0 35 chrX 74038550 74038663 -102935477 - MIR3 SINE MIR -36 172 64 281 297 40 0 chrX 74038864 74038938 -102935202 + MIR3 SINE MIR 101 177 -31 1079 86 14 0 chrX 74040118 74040258 -102933882 + AluSg/x SINE Alu 154 295 -17 381 162 0 0 chrX 74040520 74040588 -102933552 + (TA)n Simple_repeat Simple_repeat 2 69 0 474 331 41 0 chrX 74040588 74040733 -102933407 - MIR SINE MIR -73 189 39 21 57 0 0 chrX 74041041 74041076 -102933064 + AT_rich Low_complexity Low_complexity 1 35 0 1606 165 47 18 chrX 74041076 74041355 -102932785 - AluJb SINE Alu -25 287 1 238 393 41 8 chrX 74042504 74042626 -102931514 + MIR SINE MIR 21 146 -62 23 33 0 0 chrX 74043424 74043454 -102930686 + AT_rich Low_complexity Low_complexity 1 30 0 7781 144 16 3 chrX 74043603 74045021 -102929119 + THE1B-int LTR MaLR 193 1580 0 2592 115 0 6 chrX 74045021 74045387 -102928753 + THE1B LTR MaLR 1 364 0 450 0 0 0 chrX 74045696 74045746 -102928394 + (CA)n Simple_repeat Simple_repeat 2 51 0 2667 32 3 0 chrX 74046878 74047188 -102926952 - AluY SINE Alu 0 311 1 292 368 70 40 chrX 74047209 74047581 -102926559 + L2 LINE L2 2595 2977 -337 188 360 24 92 chrX 74047762 74047926 -102926214 + L2 LINE L2 3116 3268 -4 663 285 45 41 chrX 74049151 74049393 -102924747 - MIR SINE MIR 0 262 20 22 0 0 0 chrX 74049394 74049416 -102924724 + AT_rich Low_complexity Low_complexity 1 22 0 1239 226 68 0 chrX 74052696 74052962 -102921178 - AluJo SINE Alu -28 284 1 214 317 17 0 chrX 74053025 74053085 -102921055 - MIR SINE MIR -110 152 92 5672 160 12 9 chrX 74053426 74055190 -102918950 + L1PA13 LINE L1 4398 6163 0 335 324 113 7 chrX 74055516 74055658 -102918482 + MIR SINE MIR 32 188 -74 4320 196 81 7 chrX 74058066 74058904 -102915236 + L1M1 LINE L1 17 916 -6649 16130 184 24 23 chrX 74058911 74058970 -102915170 + L1M1 LINE L1 10 67 -7498 252 0 0 0 chrX 74058970 74058998 -102915142 + (CA)n Simple_repeat Simple_repeat 1 28 0 16130 184 24 23 chrX 74058998 74060214 -102913926 + L1M1 LINE L1 67 1280 -6285 1706 137 7 42 chrX 74060214 74060499 -102913641 + AluJb SINE Alu 6 280 -32 936 45 25 32 chrX 74060499 74060656 -102913484 + (GAAA)n Simple_repeat Simple_repeat 1 156 0 16130 184 24 23 chrX 74060656 74062542 -102911598 + L1M1 LINE L1 1279 3178 -4387 2678 19 0 0 chrX 74062535 74062843 -102911297 - L1PA3 LINE L1 -510 5645 5338 * 4582 15 0 0 chrX 74062843 74063357 -102910783 + L1PA3 LINE L1 5632 6150 -5 4010 207 13 16 chrX 74063358 74064769 -102909371 + L1M1 LINE L1 3161 4566 -2999 708 257 91 33 chrX 74064762 74065351 -102908789 + L1ME1 LINE L1 1230 1842 -4888 * 705 269 17 36 chrX 74065380 74065752 -102908388 + L1ME1 LINE L1 1967 2519 -4603 612 261 106 114 chrX 74065771 74066395 -102907745 - MLT1E3 LTR MaLR -5 619 1 491 274 29 25 chrX 74066460 74066664 -102907476 + L1ME1 LINE L1 2601 2805 -4317 1047 258 112 23 chrX 74066747 74067356 -102906784 + L1ME1 LINE L1 3367 4029 -2912 999 186 59 14 chrX 74067361 74067581 -102906559 + MLT1B-int LTR MaLR 1142 1371 0 1791 165 25 66 chrX 74067581 74067988 -102906152 + MLT1B LTR MaLR 1 390 0 2540 237 80 12 chrX 74067988 74069082 -102905058 + L1ME1 LINE L1 5797 6954 -7 341 339 0 9 chrX 74069116 74069228 -102904912 + MIR SINE MIR 29 139 -123 433 186 41 31 chrX 74069379 74069476 -102904664 - MER3 DNA MER1_type -83 126 29 21 57 0 0 chrX 74069647 74069682 -102904458 + AT_rich Low_complexity Low_complexity 1 35 0 1552 316 45 4 chrX 74070641 74071156 -102902984 + L1MB5 LINE L1 50 585 -6274 1832 169 13 0 chrX 74071160 74071644 -102902496 + AluSx SINE Alu 1 488 0 2230 225 37 30 chrX 74071658 74071740 -102902400 + L1MB5 LINE L1 623 703 -6156 3158 43 2 17 chrX 74071740 74072155 -102901985 + L1PA5 LINE L1 5746 6154 0 2230 225 37 30 chrX 74072155 74072664 -102901476 + L1MB5 LINE L1 703 1218 -5641 2106 239 41 19 chrX 74072658 74072761 -102901379 + L1MB5 LINE L1 3156 3255 -3702 * 2159 109 85 15 chrX 74072761 74073101 -102901039 + THE1B LTR MaLR 1 364 0 2106 239 41 19 chrX 74073101 74073680 -102900460 + L1MB5 LINE L1 3255 3853 -3104 * 3341 214 92 22 chrX 74073678 74075143 -102898997 + L1MB5 LINE L1 5317 6907 -78 183 173 0 0 chrX 74075169 74075221 -102898919 + (TA)n Simple_repeat Simple_repeat 1 52 0 6702 244 48 33 chrX 74075227 74075543 -102898597 + L1MCa LINE L1 2300 2609 -3817 1336 199 45 34 chrX 74075543 74075834 -102898306 + AluJo SINE Alu 1 294 -18 6702 244 48 33 chrX 74075834 74077231 -102896909 + L1MCa LINE L1 2609 4073 -2353 1955 135 0 0 chrX 74077231 74077557 -102896583 + AluSx SINE Alu 3 328 0 6702 244 48 33 chrX 74077557 74078450 -102895690 + L1MCa LINE L1 4073 4950 -1476 901 167 7 7 chrX 74128450 74128600 -102845540 - MSTB LTR MaLR -276 150 1 1131 236 7 0 chrX 74128600 74128876 -102845264 - L1P LINE L1 -820 5326 5049 2792 88 44 32 chrX 74128884 74129254 -102844886 + MLT2A1 LTR ERVL 5 382 -62 243 0 0 0 chrX 74129254 74129281 -102844859 + (TG)n Simple_repeat Simple_repeat 2 28 0 2792 88 44 32 chrX 74129281 74129344 -102844796 + MLT2A1 LTR ERVL 382 443 -1 6755 77 18 15 chrX 74129345 74129383 -102844757 + HERVL-A1 LTR ERVL 1 37 -5617 2869 3 0 0 chrX 74129383 74129692 -102844448 - AluY SINE Alu -2 309 1 6755 77 18 15 chrX 74129692 74130565 -102843575 + HERVL-A1 LTR ERVL 37 914 -4740 15671 88 6 1 chrX 74130565 74132782 -102841358 + L1PA15 LINE L1 2472 4699 -1447 3262 78 2 2 chrX 74132783 74133232 -102840908 + L1P LINE L1 4192 4640 -1506 13015 108 3 2 chrX 74133234 74135141 -102838999 - L1P3 LINE L1 -4558 1893 3 5169 97 0 27 chrX 74135145 74135931 -102838209 + L1P LINE L1 4639 5403 -743 7061 51 3 6 chrX 74135943 74136845 -102837295 + L1PA7 LINE L1 5254 6153 -1 1834 198 48 0 chrX 74136845 74137240 -102836900 + L1PA15 LINE L1 4878 5291 -855 3569 151 40 6 chrX 74137400 74138051 -102836089 + L1PA15 LINE L1 5281 5953 -212 236 146 24 24 chrX 74138142 74138224 -102835916 + (TA)n Simple_repeat Simple_repeat 2 83 0 610 147 37 0 chrX 74138227 74138336 -102835804 + L1M2 LINE L1 5639 5751 -549 628 225 8 8 chrX 74138337 74138466 -102835674 + MLT1B LTR MaLR 216 344 -46 286 324 35 35 chrX 74138468 74138613 -102835527 + L3 LINE CR1 1370 1514 -63 305 276 118 47 chrX 74138794 74138964 -102835176 - HAL1b LINE L1 -6 1342 1161 741 262 99 21 chrX 74138972 74139407 -102834733 - HAL1b LINE L1 -145 1203 735 202 238 0 16 chrX 74139417 74139480 -102834660 + (TTTA)n Simple_repeat Simple_repeat 2 63 0 343 227 196 18 chrX 74139634 74139854 -102834286 - HAL1b LINE L1 -1000 348 90 30 0 0 0 chrX 74140871 74140901 -102833239 + AT_rich Low_complexity Low_complexity 1 30 0 479 101 13 0 chrX 74142406 74142485 -102831655 + (TA)n Simple_repeat Simple_repeat 2 81 0 456 78 13 0 chrX 74144191 74144268 -102829872 + AluSc SINE Alu 227 304 -5 1640 184 62 5 chrX 74144270 74144693 -102829447 - L1MC1 LINE L1 -52 6281 5746 430 248 31 31 chrX 74144941 74145070 -102829070 - L2 LINE L2 0 3313 3185 5147 131 22 9 chrX 74145100 74145972 -102828168 - L1MA2 LINE L1 0 6304 5422 1280 207 12 16 chrX 74145973 74146219 -102827921 + L1PB1 LINE L1 1170 1414 -6151 * 2959 15 0 0 chrX 74146197 74146530 -102827610 - L1PA3 LINE L1 -326 5829 5497 3016 34 0 0 chrX 74146530 74146883 -102827257 + L1PA3 LINE L1 5790 6147 -8 11888 190 28 41 chrX 74146901 74147964 -102826176 + L1PB1 LINE L1 1375 2451 -5119 317 0 36 36 chrX 74147964 74148019 -102826121 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 11888 190 28 41 chrX 74148019 74148158 -102825982 + L1PB1 LINE L1 2451 2590 -4980 594 0 0 0 chrX 74148158 74148224 -102825916 + (TA)n Simple_repeat Simple_repeat 2 67 0 11888 190 28 41 chrX 74148224 74149133 -102825007 + L1PB1 LINE L1 2590 3509 -4061 189 0 0 0 chrX 74149133 74149154 -102824986 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 11888 190 28 41 chrX 74149154 74153327 -102820813 + L1PB1 LINE L1 3509 7570 0 7541 222 22 10 chrX 74153364 74155230 -102818910 + L1PA15 LINE L1 2202 4091 -2055 1467 191 13 7 chrX 74155228 74155531 -102818609 + L1PA15 LINE L1 4562 4866 -1280 * 2119 145 30 0 chrX 74155527 74155893 -102818247 + L1PA15 LINE L1 5592 5968 -197 22061 90 14 5 chrX 74155893 74158865 -102815275 - HERVL-A1 LTR ERVL -2654 3000 2 390 91 0 0 chrX 74158866 74158921 -102815219 - MLT2A1 LTR ERVL 0 444 390 482 123 39 50 chrX 74158922 74159101 -102815039 + (TA)n Simple_repeat Simple_repeat 2 178 0 463 106 31 96 chrX 74159117 74159468 -102814672 + (TA)n Simple_repeat Simple_repeat 1 328 0 387 145 42 65 chrX 74159518 74159808 -102814332 + (TA)n Simple_repeat Simple_repeat 1 283 0 328 148 38 66 chrX 74159942 74160125 -102814015 + (TA)n Simple_repeat Simple_repeat 2 179 0 257 192 56 0 chrX 74160145 74160270 -102813870 + (TA)n Simple_repeat Simple_repeat 2 133 0 2848 119 2 0 chrX 74160443 74160846 -102813294 - MLT2A1 LTR ERVL -40 404 1 10863 218 24 11 chrX 74160890 74161212 -102812928 + L1M1 LINE L1 15 331 -7234 2259 101 0 0 chrX 74161212 74161509 -102812631 + AluY SINE Alu 1 297 -14 10863 218 24 11 chrX 74161509 74163425 -102810715 + L1M1 LINE L1 331 2283 -5282 938 221 146 36 chrX 74163728 74164008 -102810132 - MLT2B1 LTR ERVL 0 520 210 2480 127 6 6 chrX 74164008 74164363 -102809777 - THE1B LTR MaLR -2 362 8 683 234 0 0 chrX 74164370 74164507 -102809633 - MLT2B1 LTR ERVL -304 216 80 241 241 51 13 chrX 74164564 74164643 -102809497 + MER88 LTR ERVL 80 161 -303 * 1283 270 76 22 chrX 74164585 74165030 -102809110 - MER74B LTR ERVL -84 538 70 512 136 0 23 chrX 74165039 74165127 -102809013 - MLT2B1 LTR ERVL -434 86 1 20697 179 25 11 chrX 74165127 74165455 -102808685 - ERVL LTR ERVL -7 5757 5435 342 0 0 0 chrX 74165455 74165493 -102808647 + (CA)n Simple_repeat Simple_repeat 2 39 0 20697 179 25 11 chrX 74165493 74169053 -102805087 - ERVL LTR ERVL -329 5435 1832 279 53 0 53 chrX 74169054 74169111 -102805029 + (TTTTA)n Simple_repeat Simple_repeat 1 54 0 1581 26 0 0 chrX 74169111 74169300 -102804840 - L1PA2 LINE L1 -24 6131 5943 5535 203 35 26 chrX 74169303 74170488 -102803652 - ERVL LTR ERVL -3926 1838 644 10496 184 50 48 chrX 74170488 74171346 -102802794 - L1MB5 LINE L1 -206 5968 5113 2194 153 8 18 chrX 74171346 74171738 -102802402 + MLT1B LTR MaLR 1 388 -2 10496 184 50 48 chrX 74171738 74171915 -102802225 - L1MB5 LINE L1 -1061 5113 4938 680 233 0 0 chrX 74171915 74172048 -102802092 + FRAM SINE Alu 26 158 -18 10496 184 50 48 chrX 74172048 74173066 -102801074 - L1MB5 LINE L1 -1236 4938 5048 2402 64 0 0 chrX 74173066 74173361 -102800779 + AluY SINE Alu 1 295 -16 10496 184 50 48 chrX 74173361 74175494 -102798646 - L1MB5 LINE L1 -1125 5049 2922 7348 38 0 0 chrX 74175494 74177171 -102796969 + L1PA5 LINE L1 4491 6167 0 894 285 4 49 chrX 74177172 74177337 -102796803 - L1MB5 LINE L1 -3221 2925 2754 1548 191 3 7 chrX 74177337 74177620 -102796520 - AluJo SINE Alu -22 290 9 894 285 4 49 chrX 74177620 74177898 -102796242 - L1MB5 LINE L1 -3392 2754 2524 3751 244 45 44 chrX 74177899 74178643 -102795497 + L1MB5 LINE L1 3656 4403 -1743 2128 126 0 3 chrX 74178643 74178952 -102795188 - AluSx SINE Alu -4 308 1 3751 244 45 44 chrX 74178952 74179525 -102794615 + L1MB5 LINE L1 4403 4974 -1172 7436 173 40 6 chrX 74179531 74181027 -102793113 + L1PB2 LINE L1 3607 5208 -943 210 71 0 0 chrX 74181027 74181055 -102793085 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 7436 173 40 6 chrX 74181055 74182033 -102792107 + L1PB2 LINE L1 5208 6151 0 2005 151 3 0 chrX 74182070 74182369 -102791771 + AluSq SINE Alu 1 300 -13 249 132 0 0 chrX 74182369 74182407 -102791733 + L1PB4 LINE L1 3746 3783 -2363 4614 175 42 14 chrX 74182419 74183906 -102790234 + L1PB4 LINE L1 4639 6154 -2 2161 210 76 11 chrX 74183902 74184454 -102789686 + L1MB5 LINE L1 5551 6138 -36 * 254 268 110 0 chrX 74184581 74184663 -102789477 + L1ME LINE L1 5736 5826 -295 6921 198 101 81 chrX 74184734 74187180 -102786960 + L1MCa LINE L1 21 2517 -3909 404 308 111 14 chrX 74187800 74188161 -102785979 - L1ME LINE L1 -331 5790 5395 366 289 114 15 chrX 74188207 74188408 -102785732 - L1ME LINE L1 -818 5328 5108 1179 117 0 0 chrX 74189227 74189407 -102784733 + (TA)n Simple_repeat Simple_repeat 1 180 0 2357 51 10 0 chrX 74189407 74189701 -102784439 - AluY SINE Alu -14 297 1 27 0 0 0 chrX 74189839 74189866 -102784274 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chrX 74189933 74189955 -102784185 + AT_rich Low_complexity Low_complexity 1 22 0 2018 90 66 7 chrX 74191265 74191553 -102782587 - AluY SINE Alu -6 305 1 245 261 0 45 chrX 74191830 74191918 -102782222 - MIR SINE MIR -1 261 178 432 344 109 9 chrX 74192051 74192272 -102781868 - MIR SINE MIR 0 262 20 1000 197 76 16 chrX 74192403 74192652 -102781488 + MER45B DNA AcHobo 777 1040 0 702 348 78 26 chrX 74192842 74193265 -102780875 - L2 LINE L2 -588 2726 2282 1716 135 32 26 chrX 74193952 74194292 -102779848 - L1MA7 LINE L1 0 6291 5950 181 318 80 34 chrX 74194446 74194534 -102779606 + L2 LINE L2 2953 3044 -228 23 0 0 0 chrX 74199982 74200005 -102774135 + AT_rich Low_complexity Low_complexity 1 23 0 255 245 125 52 chrX 74205537 74205694 -102768446 - MIR SINE MIR -81 127 3 2053 147 0 6 chrX 74206050 74206362 -102767778 - AluSx SINE Alu 0 312 3 4760 52 12 48 chrX 74206807 74207876 -102766264 + MER11A LTR ERVK 1 1266 0 1706 148 74 0 chrX 74208262 74208545 -102765595 + AluSq SINE Alu 1 304 -9 24 32 0 0 chrX 74210752 74210783 -102763357 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 74210827 74210849 -102763291 + AT_rich Low_complexity Low_complexity 1 22 0 282 147 59 29 chrX 74212420 74212522 -102761618 + (TA)n Simple_repeat Simple_repeat 2 106 0 308 229 60 0 chrX 74215817 74215900 -102758240 + L1MC3 LINE L1 6559 6646 -1139 306 262 0 39 chrX 74215822 74215925 -102758215 - L1MC4 LINE L1 -1333 6709 6611 * 246 203 17 17 chrX 74216550 74216609 -102757531 + CT-rich Low_complexity Low_complexity 3 61 0 204 135 0 0 chrX 74217351 74217388 -102756752 + (TC)n Simple_repeat Simple_repeat 2 38 0 1201 179 15 0 chrX 74217401 74217602 -102756538 + Tigger3(Golem) DNA MER2_type 1 204 -2825 389 276 20 0 chrX 74217626 74217724 -102756416 - MIR SINE MIR -113 149 50 1871 64 0 40 chrX 74217825 74218135 -102756005 - AluY SINE Alu 0 341 42 23 33 0 0 chrX 74218408 74218438 -102755702 + AT_rich Low_complexity Low_complexity 1 30 0 1706 224 42 9 chrX 74219023 74219455 -102754685 - L1MB8 LINE L1 -2 6176 5731 689 191 16 53 chrX 74223623 74223811 -102750329 - MER53 DNA DNA 0 189 9 349 197 0 0 chrX 74223836 74223907 -102750233 + L1PB1 LINE L1 6072 6142 -9 962 267 46 4 chrX 74223976 74224216 -102749924 + MIR SINE MIR 8 257 -5 733 159 79 114 chrX 74224415 74224642 -102749498 + MER20 DNA MER1_type 1 219 0 2023 157 3 27 chrX 74224707 74225024 -102749116 + MER46B DNA MER2_type 1 324 -2407 2246 128 123 5 chrX 74225024 74225407 -102748733 + MSTA LTR MaLR 1 428 0 8789 169 32 6 chrX 74225407 74227016 -102747124 + MSTA-int LTR MaLR 1 1651 0 2167 154 103 10 chrX 74227016 74227406 -102746734 + MSTA LTR MaLR 1 426 -2 2023 157 3 27 chrX 74227406 74227456 -102746684 + MER46B DNA MER2_type 186 236 0 545 328 20 36 chrX 74227577 74227830 -102746310 + L2 LINE L2 3016 3264 -49 22 35 0 0 chrX 74227968 74227997 -102746143 + AT_rich Low_complexity Low_complexity 1 29 0 231 143 250 0 chrX 74228729 74228785 -102745355 - L1PA13 LINE L1 -6684 103 34 213 39 0 0 chrX 74228942 74228968 -102745172 + (T)n Simple_repeat Simple_repeat 1 26 0 655 251 50 11 chrX 74229161 74229340 -102744800 - MER5A DNA MER1_type -3 186 1 995 197 0 17 chrX 74230102 74230280 -102743860 + FAM SINE Alu 1 175 0 29 0 0 0 chrX 74230421 74230450 -102743690 + AT_rich Low_complexity Low_complexity 1 29 0 2055 120 0 0 chrX 74230528 74230847 -102743293 + AluSx SINE Alu 2 320 0 28 29 0 0 chrX 74231007 74231042 -102743098 + AT_rich Low_complexity Low_complexity 1 35 0 288 255 59 92 chrX 74231478 74231631 -102742509 + MIR SINE MIR 100 247 -15 1276 94 0 0 chrX 74231929 74232110 -102742030 - L1P3 LINE L1 -6280 181 1 280 340 50 0 chrX 74233666 74233766 -102740374 - L3 LINE CR1 -223 1354 1250 207 160 40 0 chrX 74234164 74234214 -102739926 + (TA)n Simple_repeat Simple_repeat 2 53 0 1665 199 3 12 chrX 74234346 74234688 -102739452 + MER44D DNA MER2_type 1 609 0 6484 66 6 0 chrX 74235066 74235887 -102738253 + LTR12 LTR ERV1 1 826 0 2310 89 0 3 chrX 74235964 74236267 -102737873 + AluY SINE Alu 1 302 -9 6448 110 17 26 chrX 74238132 74239258 -102734882 + L1MA4A LINE L1 5177 6295 -8 479 173 45 0 chrX 74239555 74239665 -102734475 + L1PA15 LINE L1 6044 6158 -7 239 336 23 39 chrX 74239674 74239802 -102734338 + L2 LINE L2 3176 3301 -12 2319 148 11 62 chrX 74240275 74240655 -102733485 + Tigger2a DNA MER2_type 1 356 -2352 1512 201 17 7 chrX 74240655 74240954 -102733186 + AluJo SINE Alu 1 302 -10 2319 148 11 62 chrX 74240954 74241027 -102733113 + Tigger2a DNA MER2_type 356 431 -3 4040 153 33 17 chrX 74243037 74243735 -102730405 + MER50 LTR ERV1 3 711 -23 1997 130 16 10 chrX 74243850 74244157 -102729983 - AluSq SINE Alu -2 311 3 2167 124 48 20 chrX 74244338 74244692 -102729448 - THE1B LTR MaLR 0 364 1 1300 271 278 2 chrX 74245786 74246307 -102727833 + L2 LINE L2 1685 2349 -965 5642 144 3 8 chrX 74246343 74247338 -102726802 - L1PA15 LINE L1 0 6165 5175 2785 123 15 11 chrX 74247355 74247820 -102726320 - L1MA1 LINE L1 0 6302 5836 4745 189 7 42 chrX 74247820 74249787 -102724353 - L1MA1 LINE L1 -397 5905 4015 401 66 115 0 chrX 74249789 74249850 -102724290 + MLT2A1 LTR ERVL 377 444 0 8581 72 8 0 chrX 74249850 74250945 -102723195 + HERVL-A1 LTR ERVL 1 1104 -4550 3027 223 13 19 chrX 74250970 74251644 -102722496 - L1PA13 LINE L1 -4824 1963 1294 1566 257 65 86 chrX 74251675 74252574 -102721566 + L2 LINE L2 2435 3312 -1 1966 135 10 0 chrX 74252591 74252887 -102721253 + AluSg SINE Alu 1 299 -11 2444 118 0 11 chrX 74253091 74253471 -102720669 + L1M2 LINE L1 5393 5768 -532 25 31 0 0 chrX 74253880 74253912 -102720228 + AT_rich Low_complexity Low_complexity 1 32 0 6531 36 1 0 chrX 74254120 74254901 -102719239 + L1PA5 LINE L1 5365 6146 -8 1251 208 158 6 chrX 74255039 74255356 -102718784 + MLT1A1 LTR MaLR 1 365 0 989 262 32 4 chrX 74255440 74255692 -102718448 + MIR SINE MIR 3 261 -1 2069 156 3 12 chrX 74255892 74256232 -102717908 - MER1B DNA MER1_type 0 337 1 207 281 93 43 chrX 74256412 74256551 -102717589 + L2 LINE L2 3158 3303 -10 23 33 0 0 chrX 74257395 74257425 -102716715 + AT_rich Low_complexity Low_complexity 1 30 0 1011 124 0 0 chrX 74257438 74257583 -102716557 + L1M1 LINE L1 5526 5670 -634 23 33 0 0 chrX 74257913 74257943 -102716197 + AT_rich Low_complexity Low_complexity 1 30 0 598 283 80 14 chrX 74259299 74259511 -102714629 - MIR SINE MIR -33 229 4 986 119 0 0 chrX 74261474 74261617 -102712523 - FLAM_C SINE Alu 0 143 1 1623 202 14 9 chrX 74261951 74262560 -102711580 - L1 LINE L1 -1398 4748 3759 1181 227 17 30 chrX 74262559 74262854 -102711286 + L1PA16 LINE L1 5873 6163 -3 * 397 0 38 0 chrX 74263530 74263583 -102710557 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 297 330 61 9 chrX 74263635 74263750 -102710390 + MIR SINE MIR 14 134 -128 790 250 24 19 chrX 74264977 74265185 -102708955 - MER63A DNA MER1_type 0 210 2 5100 186 14 26 chrX 74265515 74267269 -102706871 + L1PA16 LINE L1 4426 6157 -9 330 200 0 40 chrX 74267512 74267587 -102706553 - L1ME4a LINE L1 -88 6033 5962 1747 233 21 34 chrX 74267590 74267776 -102706364 - L1ME3A LINE L1 -10 6160 5973 2005 75 4 0 chrX 74267776 74268044 -102706096 + AluY SINE Alu 32 300 -11 1747 233 21 34 chrX 74268044 74268333 -102705807 - L1ME3A LINE L1 -197 5973 5691 2800 89 38 2 chrX 74268391 74268818 -102705322 + L1MA1 LINE L1 5858 6299 -3 26 0 0 0 chrX 74268824 74268850 -102705290 + AT_rich Low_complexity Low_complexity 1 26 0 613 182 0 0 chrX 74269406 74269505 -102704635 + L1MA4A LINE L1 3 101 -6748 1338 247 7 14 chrX 74269507 74269799 -102704341 + L1MA4A LINE L1 1176 1465 -5384 2339 86 0 0 chrX 74269800 74270113 -102704027 - L1PA8 LINE L1 -381 5791 5479 2855 39 3 6 chrX 74270113 74270470 -102703670 + L1PA8 LINE L1 5816 6171 -1 8019 206 28 48 chrX 74270493 74272359 -102701781 + L1MA4A LINE L1 1472 3373 -3632 1884 158 50 0 chrX 74272359 74272721 -102701419 + L1MA2 LINE L1 5922 6301 -3 8019 206 28 48 chrX 74272721 74273576 -102700564 + L1MA4A LINE L1 3373 4243 -2762 2126 139 114 8 chrX 74273576 74273963 -102700177 - MSTA LTR MaLR 0 428 1 8019 206 28 48 chrX 74273963 74275600 -102698540 + L1MA4A LINE L1 4243 5668 -1337 2563 59 0 0 chrX 74275600 74275903 -102698237 + AluY SINE Alu 1 303 -8 8019 206 28 48 chrX 74275903 74277041 -102697099 + L1MA4A LINE L1 5668 6827 -178 440 251 69 20 chrX 74277149 74277352 -102696788 - L1MEd LINE L1 -5011 1108 896 256 351 81 0 chrX 74277781 74277855 -102696285 + L2 LINE L2 3155 3234 -38 231 103 0 0 chrX 74278402 74278441 -102695699 + (TG)n Simple_repeat Simple_repeat 2 40 0 871 161 35 0 chrX 74279086 74279260 -102694880 + L1MB1 LINE L1 5345 5524 -644 1746 197 31 7 chrX 74279268 74279750 -102694390 - L1PA16 LINE L1 -2 6163 5651 1764 154 7 122 chrX 74279954 74280395 -102693745 - L1PA16 LINE L1 -2134 4012 3623 3063 177 7 28 chrX 74280398 74281070 -102693070 + L1MB1 LINE L1 5505 6162 -6 4185 219 55 40 chrX 74281103 74281685 -102692455 + L1M4 LINE L1 3846 4418 -1766 14482 146 19 5 chrX 74281685 74284069 -102690071 + Tigger1 DNA MER2_type 1 2418 0 4185 219 55 40 chrX 74284069 74285405 -102688735 + L1M4 LINE L1 4418 5818 -366 5186 127 47 0 chrX 74285407 74286233 -102687907 + L1PA15 LINE L1 5298 6162 -3 22 56 0 0 chrX 74289491 74289527 -102684613 + AT_rich Low_complexity Low_complexity 1 36 0 587 280 11 59 chrX 74289993 74290179 -102683961 + MER5B DNA MER1_type 1 177 -1 267 303 70 24 chrX 74290642 74290827 -102683313 - MIR SINE MIR -20 242 55 1728 43 0 0 chrX 74290928 74291139 -102683001 + L1PA3 LINE L1 5940 6150 -5 27 0 0 0 chrX 74291139 74291166 -102682974 + AT_rich Low_complexity Low_complexity 1 27 0 2072 124 0 3 chrX 74292323 74292614 -102681526 + AluSq SINE Alu 1 290 -23 2014 204 21 50 chrX 74293273 74293547 -102680593 + MLT1D LTR MaLR 34 289 -216 1110 160 11 0 chrX 74293547 74293735 -102680405 + L1PA16 LINE L1 5968 6157 -9 2014 204 21 50 chrX 74293735 74293945 -102680195 + MLT1D LTR MaLR 289 504 -1 205 143 0 0 chrX 74298290 74298325 -102675815 - L2 LINE L2 0 3313 3279 829 263 9 31 chrX 74298747 74298971 -102675169 - MIR SINE MIR 0 262 44 921 181 62 0 chrX 74299370 74299563 -102674577 + MER3 DNA MER1_type 2 206 -3 408 289 32 45 chrX 74300120 74300276 -102673864 - MER63A DNA MER1_type -12 198 45 21 0 0 0 chrX 74300808 74300829 -102673311 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chrX 74301082 74301116 -102673024 + AT_rich Low_complexity Low_complexity 1 34 0 2327 164 31 7 chrX 74301511 74301927 -102672213 - MSTB LTR MaLR 0 426 1 8803 178 11 25 chrX 74301927 74303601 -102670539 - MSTB-int LTR MaLR 0 1651 1 2247 174 24 7 chrX 74303601 74304020 -102670120 - MSTB LTR MaLR 0 426 1 6084 269 36 75 chrX 74304513 74306945 -102667195 + L1M2 LINE L1 65 2402 -4447 1112 101 0 13 chrX 74406946 74407130 -102567010 + AluSc SINE Alu 137 309 0 462 277 80 41 chrX 74407130 74407726 -102566414 + L1ME LINE L1 673 1164 -5053 1949 152 58 22 chrX 74407868 74408229 -102565911 - THE1C LTR MaLR -1 374 1 9637 126 32 36 chrX 74408229 74409815 -102564325 - THE1C-int LTR MaLR 0 1580 1 2391 138 14 0 chrX 74409815 74410185 -102563955 - THE1C LTR MaLR 0 375 1 334 86 0 5 chrX 74410207 74410261 -102563879 - THE1C LTR MaLR -312 52 1 21 89 0 0 chrX 74410287 74410343 -102563797 + AT_rich Low_complexity Low_complexity 1 56 0 572 335 10 7 chrX 74410343 74410639 -102563501 + L1ME LINE L1 1520 1816 -4580 1514 273 39 17 chrX 74410674 74411319 -102562821 + L1M4 LINE L1 4261 4919 -1227 1004 317 73 54 chrX 74411318 74411952 -102562188 + L1MA4 LINE L1 62 707 -6142 * 11776 230 53 15 chrX 74412258 74415088 -102559052 + L1MA4 LINE L1 1332 4053 -2954 6043 83 39 0 chrX 74415088 74415882 -102558258 - LTR12 LTR ERV1 0 826 2 11776 230 53 15 chrX 74415882 74418820 -102555320 + L1MA4 LINE L1 4053 7006 -1 982 230 32 29 chrX 74418852 74419230 -102554910 + L1MA6 LINE L1 3095 3473 -2673 905 377 16 31 chrX 74419237 74419858 -102554282 + L1PA16 LINE L1 788 1399 -6175 258 316 10 20 chrX 74419978 74420076 -102554064 + L1PA16 LINE L1 2086 2182 -5399 8569 258 26 24 chrX 74420324 74423062 -102551078 + L1PA16 LINE L1 2182 4953 -2631 287 25 25 0 chrX 74423062 74423102 -102551038 + (CAA)n Simple_repeat Simple_repeat 2 42 0 8569 258 26 24 chrX 74423102 74423900 -102550240 + L1PA16 LINE L1 4953 5748 -1836 4746 161 20 12 chrX 74424076 74425084 -102549056 + L1PA16 LINE L1 6586 7600 -4 4952 224 64 5 chrX 74425099 74425808 -102548332 + L1MA6 LINE L1 3472 4138 -2008 225 24 71 0 chrX 74425808 74425850 -102548290 + (TA)n Simple_repeat Simple_repeat 2 46 0 4952 224 64 5 chrX 74425850 74426617 -102547523 + L1MA6 LINE L1 4138 5093 -1053 1959 157 30 19 chrX 74426626 74426995 -102547145 - L1PB4 LINE L1 -2 6154 5782 273 109 0 0 chrX 74427009 74427055 -102547085 + (TC)n Simple_repeat Simple_repeat 1 46 0 767 20 87 0 chrX 74427055 74427205 -102546935 + (TA)n Simple_repeat Simple_repeat 2 164 0 900 7 36 54 chrX 74427240 74427551 -102546589 + (TA)n Simple_repeat Simple_repeat 1 305 0 2158 192 64 18 chrX 74427560 74428118 -102546022 - L1PB4 LINE L1 -374 5782 5204 * 3444 224 19 14 chrX 74428116 74428957 -102545183 + L1MA6 LINE L1 5455 6299 -1 293 243 36 9 chrX 74429055 74429166 -102544974 + L1M4 LINE L1 4982 5095 -1051 2034 143 26 34 chrX 74429166 74429544 -102544596 - THE1C LTR MaLR 0 375 1 1276 91 5 5 chrX 74429544 74429730 -102544410 - THE1C-int LTR MaLR 0 1580 1395 926 153 28 37 chrX 74429750 74429931 -102544209 + THE1C LTR MaLR 208 375 0 1367 241 40 14 chrX 74429944 74430297 -102543843 - MLT1A1 LTR MaLR -3 362 1 792 228 132 5 chrX 74430301 74430520 -102543620 + L1ME1 LINE L1 5915 6161 -5 27 81 0 0 chrX 74430673 74430735 -102543405 + AT_rich Low_complexity Low_complexity 1 62 0 1295 326 10 23 chrX 74430888 74431409 -102542731 + L1M3b LINE L1 1 514 -5767 3634 279 56 21 chrX 74431436 74432963 -102541177 + L1M3b LINE L1 685 2264 -4086 788 242 4 61 chrX 74433069 74433255 -102540885 - L1M4 LINE L1 -1909 4237 4065 2157 125 0 22 chrX 74433255 74433567 -102540573 - AluSx SINE Alu -7 305 1 788 242 4 61 chrX 74433567 74433611 -102540529 - L1M4 LINE L1 -2081 4065 4020 6945 209 28 21 chrX 74433625 74435026 -102539114 - L1PA15 LINE L1 -13 6152 4762 198 0 0 0 chrX 74435026 74435048 -102539092 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 9234 83 30 20 chrX 74435049 74436405 -102537735 - SVA Other Other 0 1386 17 6945 209 28 21 chrX 74436405 74437384 -102536756 - L1PA15 LINE L1 -1403 4762 3748 1734 178 10 0 chrX 74437384 74437688 -102536452 - AluSx SINE Alu -5 307 1 6945 209 28 21 chrX 74437688 74438015 -102536125 - L1PA15 LINE L1 -2417 3748 3425 22 35 0 0 chrX 74438037 74438066 -102536074 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 74438220 74438250 -102535890 + AT_rich Low_complexity Low_complexity 1 30 0 301 58 39 0 chrX 74438468 74438520 -102535620 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chrX 74438811 74438839 -102535301 + AT_rich Low_complexity Low_complexity 1 28 0 404 269 57 53 chrX 74440020 74440247 -102533893 + L1MC/D LINE L1 5254 5481 -2327 2305 150 62 17 chrX 74440377 74440836 -102533304 - L1MA9 LINE L1 -572 5719 5241 * 2524 184 40 48 chrX 74440835 74441460 -102532680 + L1MA9 LINE L1 5691 6310 -2 912 258 26 30 chrX 74441542 74441809 -102532331 - LTR16C LTR ERVL -2 489 224 265 271 0 0 chrX 74441830 74441889 -102532251 - LTR16C LTR ERVL -388 103 45 324 339 9 26 chrX 74442302 74442417 -102531723 + MIR SINE MIR 3 115 -147 913 252 0 9 chrX 74442632 74442858 -102531282 - MER58A DNA MER1_type 0 224 1 465 284 54 14 chrX 74443792 74443940 -102530200 + MER5A DNA MER1_type 36 189 0 926 344 28 13 chrX 74444462 74444860 -102529280 - MLT1K LTR MaLR -77 511 108 795 293 48 12 chrX 74444876 74445125 -102529015 - MIR SINE MIR 0 262 5 553 192 6 0 chrX 74446928 74447091 -102527049 + L1MC1 LINE L1 6018 6281 -52 466 75 12 0 chrX 74447093 74447173 -102526967 - AluSc SINE Alu -2 307 227 443 107 13 0 chrX 74448879 74448954 -102525186 + (TA)n Simple_repeat Simple_repeat 2 77 0 30 0 0 0 chrX 74450459 74450489 -102523651 + AT_rich Low_complexity Low_complexity 1 30 0 361 227 196 18 chrX 74451506 74451726 -102522414 + HAL1b LINE L1 90 348 -1000 202 238 0 16 chrX 74451880 74451943 -102522197 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 789 262 99 21 chrX 74451953 74452388 -102521752 + HAL1b LINE L1 735 1203 -145 307 276 118 47 chrX 74452396 74452566 -102521574 + HAL1b LINE L1 1161 1342 -6 291 324 35 35 chrX 74452747 74452892 -102521248 - L3 LINE CR1 -63 1514 1370 632 225 8 8 chrX 74452894 74453023 -102521117 - MLT1B LTR MaLR -46 344 216 611 147 37 0 chrX 74453024 74453133 -102521007 - L1M2 LINE L1 -549 5751 5639 236 146 24 24 chrX 74453136 74453218 -102520922 + (TA)n Simple_repeat Simple_repeat 2 83 0 3588 151 40 6 chrX 74453309 74453960 -102520180 - L1PA15 LINE L1 -212 5953 5281 1862 203 47 0 chrX 74454120 74454528 -102519612 - L1PA15 LINE L1 -855 5291 4865 * 7092 51 3 6 chrX 74454515 74455417 -102518723 - L1PA7 LINE L1 -1 6153 5254 5164 98 0 27 chrX 74455429 74456215 -102517925 - L1P LINE L1 -743 5403 4639 12870 109 3 2 chrX 74456219 74458126 -102516014 + L1P3 LINE L1 3 1893 -4558 3266 78 2 2 chrX 74458128 74458577 -102515563 - L1P LINE L1 -1506 4640 4192 15684 87 6 1 chrX 74458578 74460794 -102513346 - L1P LINE L1 -1447 4699 2472 6715 78 16 16 chrX 74460794 74461668 -102512472 - HERVL-A1 LTR ERVL -4740 914 38 2831 6 0 0 chrX 74461668 74461979 -102512161 + AluY SINE Alu 1 311 0 6715 78 16 16 chrX 74461979 74462018 -102512122 - HERVL-A1 LTR ERVL -5615 39 1 2771 88 44 32 chrX 74462019 74462082 -102512058 - MLT2A1 LTR ERVL -1 443 382 243 0 0 0 chrX 74462082 74462109 -102512031 + (CA)n Simple_repeat Simple_repeat 2 28 0 2771 88 44 32 chrX 74462109 74462479 -102511661 - MLT2A1 LTR ERVL -62 382 5 4944 167 30 17 chrX 74462487 74462763 -102511377 + L1PA15 LINE L1 5049 5320 -845 1952 211 38 19 chrX 74462763 74463181 -102510959 + MSTB LTR MaLR 1 426 0 4944 167 30 17 chrX 74463181 74463976 -102510164 + L1PA15 LINE L1 5320 6137 -28 363 277 35 31 chrX 74463972 74464173 -102509967 + L1MC3 LINE L1 5965 6104 -62 * 280 320 93 0 chrX 74464359 74464456 -102509684 + MIR SINE MIR 85 190 -72 2377 211 49 15 chrX 74464756 74465288 -102508852 + L1MCb LINE L1 1 550 -5495 2550 244 33 56 chrX 74465379 74466669 -102507471 + L1MCb LINE L1 570 1799 -4765 875 282 49 3 chrX 74466675 74467022 -102507118 + L1MCb LINE L1 2820 3182 -3382 1609 244 18 8 chrX 74467046 74467436 -102506704 - MSTD LTR MaLR -2 394 1 5886 257 59 42 chrX 74467436 74467660 -102506480 - MSTD-int LTR MaLR 0 1735 1516 5314 114 5 2 chrX 74467660 74468470 -102505670 + L1MA2 LINE L1 5489 6300 -4 5886 257 59 42 chrX 74468470 74469950 -102504190 - MSTD-int LTR MaLR -219 1516 3 1127 214 60 38 chrX 74469955 74470222 -102503918 - MSTD LTR MaLR -2 394 122 1483 248 93 58 chrX 74470247 74471204 -102502936 - L1M3c LINE L1 -4650 2387 238 8529 220 42 9 chrX 74471205 74471323 -102502817 - L1M1 LINE L1 -5669 1896 1783 216 0 0 0 chrX 74471323 74471347 -102502793 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 210 37 0 0 chrX 74471357 74471384 -102502756 + (TC)n Simple_repeat Simple_repeat 2 28 0 8529 220 42 9 chrX 74471384 74473068 -102501072 - L1M1 LINE L1 -5790 1775 22 613 242 0 0 chrX 74473614 74473738 -102500402 + MER4D LTR ERV1 606 729 -174 436 240 29 0 chrX 74473739 74473843 -102500297 - L1 LINE L1 -1170 6395 6289 365 200 0 0 chrX 74473892 74473957 -102500183 - L1 LINE L1 -5826 1739 1675 879 149 0 0 chrX 74473970 74474104 -102500036 + MER4D LTR ERV1 742 875 -28 405 0 0 0 chrX 74474380 74474425 -102499715 + (TG)n Simple_repeat Simple_repeat 1 45 0 764 302 128 22 chrX 74474548 74474916 -102499224 + LTR16A LTR ERVL 32 438 -12 22 0 0 0 chrX 74475097 74475119 -102499021 + AT_rich Low_complexity Low_complexity 1 22 0 659 350 36 21 chrX 74475367 74475696 -102498444 - L2 LINE L2 -586 2728 2395 255 175 0 0 chrX 74476780 74476837 -102497303 + GA-rich Low_complexity Low_complexity 4 60 0 4435 225 9 5 chrX 74477398 74478242 -102495898 + MER54A LTR ERVL 1 848 -53 954 139 7 0 chrX 74478240 74478391 -102495749 + THE1C LTR MaLR 224 375 0 * 21 36 0 0 chrX 74478616 74478644 -102495496 + AT_rich Low_complexity Low_complexity 1 28 0 557 268 72 5 chrX 74479394 74479603 -102494537 - Tigger8 DNA MER2_type -273 393 171 328 240 23 62 chrX 74479876 74480005 -102494135 - MER103 DNA DNA -2 164 41 2260 74 0 10 chrX 74480044 74480343 -102493797 - AluY SINE Alu -15 296 1 651 307 104 18 chrX 74480524 74480908 -102493232 + MLT1L LTR MaLR 199 615 0 180 0 0 0 chrX 74481427 74481447 -102492693 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2074 130 0 10 chrX 74481452 74481760 -102492380 + AluSx SINE Alu 1 305 -7 2565 109 39 0 chrX 74482274 74482688 -102491452 + L1MA5A LINE L1 5862 6291 -6 401 191 59 4 chrX 74482825 74482959 -102491181 + Tigger5 DNA MER2_type 1 194 -2129 275 254 0 0 chrX 74482956 74483023 -102491117 + Tigger5 DNA MER2_type 2244 2310 -13 * 480 181 0 19 chrX 74483043 74483148 -102490992 + L1PA16 LINE L1 6064 6166 0 1395 245 72 50 chrX 74483235 74483378 -102490762 + L1MC4a LINE L1 5254 5392 -2416 2384 92 0 0 chrX 74483378 74483683 -102490457 + AluY SINE Alu 1 305 -6 1395 245 72 50 chrX 74483683 74484201 -102489939 + L1MC4a LINE L1 5392 5930 -1878 2283 249 86 0 chrX 74485192 74485794 -102488346 - MLT1E1 LTR MaLR 0 654 1 1788 176 0 0 chrX 74485969 74486258 -102487882 - AluSx SINE Alu -17 295 7 907 159 24 24 chrX 74487706 74487913 -102486227 - L1MA3 LINE L1 0 6305 6099 21 57 0 0 chrX 74488474 74488509 -102485631 + AT_rich Low_complexity Low_complexity 1 35 0 556 76 0 13 chrX 74489021 74489100 -102485040 - MADE1 DNA Mariner -2 78 1 950 227 59 0 chrX 74489774 74489977 -102484163 + MER58A DNA MER1_type 10 224 0 1735 160 27 24 chrX 74490004 74490342 -102483798 + L1MA7 LINE L1 5835 6173 -118 1941 141 27 35 chrX 74490344 74490714 -102483426 + THE1C LTR MaLR 4 370 -5 509 93 0 173 chrX 74490719 74490869 -102483271 + L1MA7 LINE L1 6168 6291 0 550 192 0 0 chrX 74491761 74491860 -102482280 - L1PA15 LINE L1 -181 6635 6537 12379 242 59 26 chrX 74491870 74495281 -102478859 - L1PA15 LINE L1 -543 6274 2303 423 0 0 0 chrX 74495281 74495328 -102478812 + (TG)n Simple_repeat Simple_repeat 2 48 0 12379 242 59 26 chrX 74495328 74497709 -102476431 - L1PA15 LINE L1 -4514 2303 1 273 273 193 0 chrX 74498313 74498401 -102475739 + MIR3 SINE MIR 50 154 -54 201 296 0 34 chrX 74498403 74498491 -102475649 + T-rich Low_complexity Low_complexity 1 85 0 24 0 0 0 chrX 74498545 74498569 -102475571 + AT_rich Low_complexity Low_complexity 1 24 0 1642 148 7 27 chrX 74498625 74498922 -102475218 - L1MA7 LINE L1 -43 6248 5958 22 34 0 68 chrX 74499223 74499282 -102474858 + AT_rich Low_complexity Low_complexity 1 55 0 2295 36 0 0 chrX 74500184 74500459 -102473681 + L1PA3 LINE L1 5878 6152 -3 23 0 0 0 chrX 74500465 74500488 -102473652 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chrX 74500589 74500641 -102473499 + AT_rich Low_complexity Low_complexity 1 52 0 185 257 184 44 chrX 74501079 74501215 -102472925 - L2 LINE L2 -1074 2240 2086 255 226 75 54 chrX 74501251 74501344 -102472796 + L2 LINE L2 3219 3313 0 3067 181 55 1 chrX 74502691 74503358 -102470782 + L1MCa LINE L1 922 1624 -4802 315 345 204 18 chrX 74503597 74504194 -102469946 + L2 LINE L2 2050 2757 -557 223 317 17 0 chrX 74504641 74504701 -102469439 - L2 LINE L2 -220 3052 2992 215 343 129 0 chrX 74504686 74504826 -102469314 + L3 LINE CR1 1146 1303 -274 * 274 302 12 0 chrX 74504832 74504918 -102469222 - L2 LINE L2 -961 2353 2267 186 182 114 0 chrX 74504952 74504996 -102469144 - L2 LINE L2 -2 3311 3263 * 494 239 118 0 chrX 74504968 74505146 -102468994 - MIR SINE MIR -17 245 47 922 215 5 28 chrX 74505175 74505389 -102468751 + MER3 DNA MER1_type 1 209 0 374 314 38 44 chrX 74506790 74506949 -102467191 + MIR3 SINE MIR 30 187 -21 23 0 0 0 chrX 74507899 74507922 -102466218 + AT_rich Low_complexity Low_complexity 1 23 0 2370 117 117 5 chrX 74508140 74508525 -102465615 - MSTA LTR MaLR 0 428 1 198 0 0 0 chrX 74508728 74508750 -102465390 + (A)n Simple_repeat Simple_repeat 1 22 0 422 35 0 18 chrX 74508774 74508831 -102465309 + (GA)n Simple_repeat Simple_repeat 2 57 0 291 258 197 8 chrX 74509213 74509345 -102464795 + MLT1K LTR MaLR 428 584 -4 21 0 0 0 chrX 74509806 74509827 -102464313 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chrX 74509933 74509956 -102464184 + (A)n Simple_repeat Simple_repeat 1 23 0 1387 278 94 35 chrX 74510654 74511646 -102462494 + L1M4 LINE L1 2900 3949 -2197 642 218 69 19 chrX 74511787 74512003 -102462137 + L1M4 LINE L1 4140 4366 -1780 4110 90 0 0 chrX 74512041 74512595 -102461545 - MER41A LTR ERV1 0 554 1 1699 86 9 0 chrX 74512595 74512815 -102461325 - MER41A-int LTR ERV1 -2 5944 5723 548 262 23 6 chrX 74512815 74512987 -102461153 + L1ME LINE L1 4171 4345 -1801 453 224 58 29 chrX 74513002 74513176 -102460964 + L1ME LINE L1 4497 4675 -1471 493 276 116 32 chrX 74513207 74513375 -102460765 + L1ME LINE L1 4733 4885 -1279 3574 208 9 22 chrX 74513375 74514232 -102459908 + L1MA10 LINE L1 5487 6332 -2 493 276 116 32 chrX 74514232 74514739 -102459401 + L1ME LINE L1 4885 5480 -684 1093 154 29 0 chrX 74514797 74515005 -102459135 - L1MA5 LINE L1 -2 6298 6085 1382 174 4 0 chrX 74515005 74515269 -102458871 - L1PA14 LINE L1 -1008 5789 5525 6288 97 12 0 chrX 74515270 74516277 -102457863 + L1PA14 LINE L1 5792 6809 -3 5193 173 25 7 chrX 74516288 74518152 -102455988 - L1MA5 LINE L1 -203 6097 4203 8580 229 46 17 chrX 74518240 74521141 -102452999 - L1PA13 LINE L1 -3080 3717 718 405 39 0 0 chrX 74521141 74521192 -102452948 + (CA)n Simple_repeat Simple_repeat 2 52 0 8580 229 46 17 chrX 74521192 74521932 -102452208 - L1PA13 LINE L1 -6079 718 1 299 310 39 20 chrX 74522101 74522304 -102451836 - L1MEd LINE L1 -4974 1145 939 207 114 0 0 chrX 74522738 74522773 -102451367 + (CA)n Simple_repeat Simple_repeat 2 36 0 916 241 61 82 chrX 74522781 74523158 -102450982 - MLT1B LTR MaLR -11 379 11 2767 314 15 34 chrX 74523702 74524624 -102449516 + L1PA15 LINE L1 2 906 -5881 9543 243 112 14 chrX 74524637 74525256 -102448884 + L1PA15 LINE L1 1242 1799 -5017 2973 92 5 22 chrX 74525256 74525702 -102448438 + L1PA7 LINE L1 5717 6154 0 9543 243 112 14 chrX 74525702 74526412 -102447728 + L1PA15 LINE L1 1799 2439 -4377 2138 127 0 10 chrX 74526412 74526719 -102447421 + AluSq SINE Alu 1 304 -9 9543 243 112 14 chrX 74526719 74530290 -102443850 + L1PA15 LINE L1 2439 6645 -171 42355 37 21 1 chrX 74530295 74536315 -102437825 + L1PA2 LINE L1 8 6152 -3 872 222 0 0 chrX 74536317 74536493 -102437647 + L1PA15 LINE L1 6633 6808 -8 30 0 0 0 chrX 74536524 74536554 -102437586 + AT_rich Low_complexity Low_complexity 1 30 0 651 204 0 28 chrX 74537018 74537160 -102436980 - FLAM_C SINE Alu -1 142 5 33 56 0 0 chrX 74537308 74537362 -102436778 + AT_rich Low_complexity Low_complexity 1 54 0 228 170 0 0 chrX 74538326 74538379 -102435761 + T-rich Low_complexity Low_complexity 1 53 0 4482 244 55 10 chrX 74538519 74540447 -102433693 + L1MA9 LINE L1 2144 4223 -1923 246 62 0 0 chrX 74540451 74540483 -102433657 + (TG)n Simple_repeat Simple_repeat 2 33 0 270 214 34 0 chrX 74540569 74540658 -102433482 + (TA)n Simple_repeat Simple_repeat 2 93 0 204 197 70 0 chrX 74540697 74540768 -102433372 + (TA)n Simple_repeat Simple_repeat 1 76 0 * 326 236 28 50 chrX 74540718 74540900 -102433240 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 * 426 217 72 0 chrX 74540792 74540958 -102433182 + (TA)n Simple_repeat Simple_repeat 2 179 0 311 270 11 11 chrX 74540966 74541055 -102433085 - L1MC4 LINE L1 -1340 6702 6614 311 229 0 62 chrX 74540976 74541072 -102433068 + L1MC4 LINE L1 6615 6704 -1338 225 108 0 0 chrX 74541092 74541129 -102433011 + (CA)n Simple_repeat Simple_repeat 2 38 0 1080 220 18 21 chrX 74541130 74541457 -102432683 + L1MA9 LINE L1 4239 4564 -1582 945 222 15 11 chrX 74541457 74541780 -102432360 - MSTD LTR MaLR -3 393 1 333 250 9 28 chrX 74541781 74541889 -102432251 + L1MA9 LINE L1 4565 4670 -1476 * 3411 218 18 1 chrX 74541882 74542539 -102431601 - MST-int LTR MaLR -576 1075 408 2590 77 122 5 chrX 74542547 74542948 -102431192 + LTR7 LTR ERV1 1 448 -2 19382 102 37 12 chrX 74542950 74545864 -102428276 + HERVH LTR ERV1 1 2987 -4726 880 149 20 0 chrX 74545858 74546006 -102428134 + HERVH LTR ERV1 3140 3290 -4423 * 3349 114 0 10 chrX 74545996 74546503 -102427637 + HERVH LTR ERV1 3492 3993 -3720 4226 138 22 1 chrX 74546509 74547155 -102426985 + HERVH LTR ERV1 4491 5149 -2564 1336 148 19 0 chrX 74547156 74547372 -102426768 + HERVH LTR ERV1 5600 5819 -1894 2240 91 50 0 chrX 74547372 74547713 -102426427 + HERVH LTR ERV1 7324 7681 -32 2179 195 10 3 chrX 74547713 74547750 -102426390 - MSTB-int LTR MaLR -1227 508 473 2534 85 122 5 chrX 74547750 74548151 -102425989 + LTR7 LTR ERV1 1 448 -2 2179 195 10 3 chrX 74548151 74548558 -102425582 - MSTB-int LTR MaLR -1262 473 1 2106 217 19 5 chrX 74548558 74548978 -102425162 - MSTB LTR MaLR 0 426 1 2654 205 24 10 chrX 74548978 74549257 -102424883 + L1MA9 LINE L1 4830 5103 -1209 4049 136 3 2 chrX 74549257 74549891 -102424249 + MER41B LTR ERV1 1 635 0 2654 205 24 10 chrX 74549891 74550601 -102423539 + L1MA9 LINE L1 5103 5828 -484 2006 247 115 51 chrX 74550635 74551552 -102422588 - L1MEc LINE L1 -1704 4511 3489 1865 132 0 4 chrX 74551552 74551818 -102422322 - AluSx SINE Alu -45 267 3 2006 247 115 51 chrX 74551818 74552162 -102421978 - L1MEc LINE L1 -2726 3489 3169 1277 304 43 30 chrX 74552276 74553158 -102420982 - L1MEc LINE L1 -4493 1903 1010 1069 307 43 25 chrX 74553205 74553807 -102420333 - L1MEc LINE L1 -5667 729 31 11233 205 35 18 chrX 74553861 74556160 -102417980 + L1M1 LINE L1 13 2350 -5215 660 113 165 0 chrX 74556166 74556301 -102417839 - AluSc SINE Alu 0 327 174 3334 111 16 61 chrX 74556307 74556927 -102417213 + L1M1 LINE L1 2355 2946 -4619 * 4453 160 60 34 chrX 74556920 74557498 -102416642 - L1M1 LINE L1 -4234 3331 2713 324 0 0 0 chrX 74557498 74557534 -102416606 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 4453 160 60 34 chrX 74557534 74557969 -102416171 - L1M1 LINE L1 -4852 2713 2291 3278 224 51 4 chrX 74557969 74558415 -102415725 - L1M1 LINE L1 -6225 1340 847 210 37 0 0 chrX 74558415 74558442 -102415698 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 3278 224 51 4 chrX 74558442 74558701 -102415439 - L1M1 LINE L1 -6718 847 602 11901 212 26 7 chrX 74558707 74559260 -102414880 + L1MA2 LINE L1 2404 2945 -3201 1560 206 89 35 chrX 74559260 74559663 -102414477 - MSTA LTR MaLR -3 425 1 11901 212 26 7 chrX 74559663 74560618 -102413522 + L1MA2 LINE L1 2945 3880 -2266 207 0 0 0 chrX 74560618 74560641 -102413499 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 11901 212 26 7 chrX 74560641 74561963 -102412177 + L1MA2 LINE L1 3880 5289 -857 2526 130 43 2 chrX 74561962 74562385 -102411755 + L1MA2 LINE L1 5525 5964 -340 * 958 138 19 0 chrX 74562354 74562513 -102411627 - L1MA1 LINE L1 -67 6235 6074 * 1514 157 48 7 chrX 74562487 74562781 -102411359 + L1MA1 LINE L1 5917 6222 -80 1311 129 34 0 chrX 74562781 74563012 -102411128 + L1MA2 LINE L1 6064 6304 0 1664 132 0 0 chrX 74565069 74565304 -102408836 + AluSc SINE Alu 1 235 -74 228 397 63 11 chrX 74615495 74615669 -102358471 - MER5A DNA MER1_type 0 189 7 27 81 0 0 chrX 74616130 74616192 -102357948 + AT_rich Low_complexity Low_complexity 1 62 0 25 51 0 0 chrX 74616301 74616340 -102357800 + AT_rich Low_complexity Low_complexity 1 39 0 486 49 0 0 chrX 74616410 74616471 -102357669 + (TA)n Simple_repeat Simple_repeat 2 62 0 1386 314 14 7 chrX 74617853 74618290 -102355850 - L1M3a LINE L1 -5505 450 11 225 200 125 58 chrX 74618355 74618475 -102355665 - L1ME LINE L1 -2846 3234 3107 * 573 119 0 0 chrX 74618454 74618538 -102355602 - L1M2 LINE L1 -556 5678 5595 1520 183 56 3 chrX 74618538 74618874 -102355266 + L1MA6 LINE L1 5933 6288 -12 202 213 13 53 chrX 74618907 74618982 -102355158 + T-rich Low_complexity Low_complexity 2 73 0 303 280 76 45 chrX 74619502 74619659 -102354481 - L1ME LINE L1 -2880 3200 3039 442 315 113 24 chrX 74619663 74620448 -102353692 - L1ME LINE L1 -4312 1949 1095 417 285 94 21 chrX 74620451 74620851 -102353289 - L1ME LINE L1 -5059 1011 556 7267 228 32 38 chrX 74621571 74625606 -102348534 + L1MA3 LINE L1 2816 6701 -306 1314 115 0 0 chrX 74625612 74625812 -102348328 + L1MA3 LINE L1 6806 7005 -2 21 36 0 0 chrX 74625813 74625841 -102348299 + AT_rich Low_complexity Low_complexity 1 28 0 884 283 52 0 chrX 74626145 74626378 -102347762 + MIR SINE MIR 5 249 -13 999 130 49 49 chrX 74626629 74627298 -102346842 + LTR1 LTR ERV1 1 775 -10 741 308 105 35 chrX 74627397 74628017 -102346123 - L1M4 LINE L1 -743 5403 4741 394 244 16 16 chrX 74628529 74628652 -102345488 + HsTC2 DNA Tc2 1777 1899 0 230 276 23 0 chrX 74628777 74628864 -102345276 + L1ME LINE L1 5685 5773 -389 509 401 17 3 chrX 74629512 74629856 -102344284 + L1MEc LINE L1 32 380 -6016 2169 65 9 86 chrX 74630110 74630446 -102343694 + AluY SINE Alu 1 310 -1 1708 249 37 42 chrX 74630457 74631079 -102343061 + L1P3 LINE L1 3 727 -5148 * 5736 135 20 1 chrX 74631077 74632551 -102341589 + L1PA10 LINE L1 4659 6157 -11 18916 53 1 0 chrX 74632900 74635311 -102338829 + L1P LINE L1 2882 5294 -852 42397 39 23 1 chrX 74635411 74640816 -102333324 - L1P1 LINE L1 -628 5527 1 1594 233 31 60 chrX 74640820 74641465 -102332675 - L1M4 LINE L1 -1009 6556 5931 3720 73 2 0 chrX 74641466 74641957 -102332183 - L1PA6 LINE L1 -5 6149 5658 290 350 190 0 chrX 74642378 74642515 -102331625 - MER5A DNA MER1_type -1 188 26 213 284 43 7 chrX 74643036 74643177 -102330963 + (TA)n Simple_repeat Simple_repeat 2 147 0 1877 285 9 19 chrX 74643369 74643910 -102330230 - L1MDa LINE L1 -5985 555 20 290 198 88 11 chrX 74644077 74644168 -102329972 - L1MCa LINE L1 -3170 4395 4298 5066 196 16 17 chrX 74644227 74645306 -102328834 - L1MC1 LINE L1 -2 6331 5254 427 259 24 42 chrX 74645347 74645514 -102328626 - MLT1A2 LTR MaLR -85 305 126 2475 197 4 44 chrX 74645514 74645831 -102328309 + MER73 LTR ERVL 1 290 -354 312 27 0 0 chrX 74645831 74645868 -102328272 + (GA)n Simple_repeat Simple_repeat 2 38 0 2475 197 4 44 chrX 74645868 74646072 -102328068 + MER73 LTR ERVL 290 501 -143 3764 202 33 1 chrX 74646072 74646760 -102327380 - L1M4 LINE L1 -6756 809 100 189 0 0 0 chrX 74646792 74646813 -102327327 + (T)n Simple_repeat Simple_repeat 1 21 0 360 146 0 107 chrX 74646813 74646916 -102327224 - L1M4 LINE L1 -7458 107 16 3398 195 33 42 chrX 74646920 74647883 -102326257 - L1MCa LINE L1 -4603 2962 1915 637 263 47 0 chrX 74647881 74648071 -102326069 - L1MCa LINE L1 -6167 1398 1200 * 333 316 118 41 chrX 74648119 74648628 -102325512 - L1M4 LINE L1 -3328 2818 2271 26 64 0 0 chrX 74648792 74648839 -102325301 + AT_rich Low_complexity Low_complexity 1 47 0 1459 207 24 93 chrX 74649350 74649391 -102324749 - MLT2D LTR ERVL 0 414 372 216 0 0 0 chrX 74649391 74649415 -102324725 + (TG)n Simple_repeat Simple_repeat 2 25 0 1459 207 24 93 chrX 74649415 74649783 -102324357 - MLT2D LTR ERVL -42 372 33 245 250 163 0 chrX 74650049 74650129 -102324011 + L1ME3A LINE L1 4739 4831 -1315 243 157 0 0 chrX 74650216 74650267 -102323873 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chrX 74650267 74650289 -102323851 + (GA)n Simple_repeat Simple_repeat 2 23 0 1819 147 0 14 chrX 74650289 74650568 -102323572 - AluSx SINE Alu -35 277 3 198 171 0 0 chrX 74650877 74650918 -102323222 + (TA)n Simple_repeat Simple_repeat 2 42 0 26 30 0 0 chrX 74650918 74650951 -102323189 + AT_rich Low_complexity Low_complexity 1 33 0 204 40 0 0 chrX 74651007 74651032 -102323108 + (CA)n Simple_repeat Simple_repeat 2 26 0 1841 282 51 37 chrX 74651075 74651971 -102322169 + L1ME3A LINE L1 5261 6169 -1 2288 90 3 0 chrX 74652824 74653125 -102321015 + AluSx SINE Alu 11 312 0 192 97 0 0 chrX 74653348 74653379 -102320761 + (T)n Simple_repeat Simple_repeat 1 31 0 2776 209 45 1 chrX 74653835 74654496 -102319644 - L1MA9 LINE L1 -1151 4995 4306 2808 166 32 19 chrX 74654507 74655305 -102318835 + L1MA9 LINE L1 4995 5797 -515 201 132 0 0 chrX 74655380 74655418 -102318722 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2029 117 3 0 chrX 74655444 74655792 -102318348 + AluSx SINE Alu 1 349 0 2103 181 11 30 chrX 74655792 74656092 -102318048 + L1MA9 LINE L1 5856 6145 -167 195 42 0 0 chrX 74656092 74656116 -102318024 + (CA)n Simple_repeat Simple_repeat 1 24 0 2103 181 11 30 chrX 74656116 74656279 -102317861 + L1MA9 LINE L1 6145 6310 -2 384 226 21 0 chrX 74656316 74656409 -102317731 - MLT1A2 LTR MaLR -279 95 1 2815 250 59 94 chrX 74656421 74657783 -102316357 - MLT1A1-int LTR MaLR -14 1357 44 2085 124 10 91 chrX 74658330 74658748 -102315392 - L1PA15 LINE L1 0 6165 5782 287 244 0 22 chrX 74658781 74658871 -102315269 - L1MC4 LINE L1 -1341 6701 6614 2160 161 16 0 chrX 74658896 74659269 -102314871 - L1PA15 LINE L1 -374 5791 5413 204 40 0 0 chrX 74659269 74659294 -102314846 + (T)n Simple_repeat Simple_repeat 1 25 0 1294 84 0 0 chrX 74659707 74659873 -102314267 - AluSg/x SINE Alu -14 298 133 10579 201 14 17 chrX 74660031 74660765 -102313375 - L1PA15 LINE L1 -733 5428 4693 366 23 0 0 chrX 74660765 74660808 -102313332 + (TG)n Simple_repeat Simple_repeat 2 44 0 10579 201 14 17 chrX 74660808 74662509 -102311631 - L1PA15 LINE L1 -1468 4693 2996 541 280 7 7 chrX 74662514 74662657 -102311483 - MLT1A1 LTR MaLR -56 309 167 272 145 0 16 chrX 74662661 74662723 -102311417 + (GA)n Simple_repeat Simple_repeat 2 62 0 646 186 55 7 chrX 74662733 74662878 -102311262 - MLT1A1 LTR MaLR -213 152 1 5075 230 62 19 chrX 74663338 74663555 -102310585 + L1MB8 LINE L1 3544 3750 -2428 321 26 0 0 chrX 74663555 74663593 -102310547 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chrX 74663592 74663612 -102310528 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 5075 230 62 19 chrX 74663593 74665905 -102308235 + L1MB8 LINE L1 3750 6162 -16 518 328 51 11 chrX 74666096 74666273 -102307867 + MIR SINE MIR 14 197 -65 1996 230 71 19 chrX 74666630 74667750 -102306390 + L1ME1 LINE L1 4683 5858 -308 496 277 32 7 chrX 74667774 74667929 -102306211 + L1MA10 LINE L1 6169 6327 -7 241 213 0 0 chrX 74668593 74668640 -102305500 + Charlie5 DNA MER1_type 18 64 -2548 611 156 43 7 chrX 74668654 74668795 -102305345 + Charlie5 DNA MER1_type 2440 2585 -27 182 320 116 41 chrX 74668905 74669052 -102305088 - MIR SINE MIR 0 262 105 1646 60 0 19 chrX 74669917 74670133 -102304007 - AluY SINE Alu -10 301 90 227 285 41 16 chrX 74670316 74670439 -102303701 + L1MC4a LINE L1 5602 5727 -394 30 0 0 0 chrX 74670966 74670996 -102303144 + AT_rich Low_complexity Low_complexity 1 30 0 3767 163 44 6 chrX 74671910 74672233 -102301907 + L1MB1 LINE L1 5438 5747 -442 485 99 12 0 chrX 74672233 74672314 -102301826 + (TCTA)n Simple_repeat Simple_repeat 4 85 0 3767 163 44 6 chrX 74672314 74672676 -102301464 + L1MB1 LINE L1 5747 6149 -40 1558 293 137 14 chrX 74672755 74673389 -102300751 - L2 LINE L2 -375 2939 2228 2278 181 29 2 chrX 74673394 74673802 -102300338 - MSTB LTR MaLR -7 419 1 254 375 54 0 chrX 74673823 74673935 -102300205 - L2 LINE L2 -1108 2206 2089 27 49 0 0 chrX 74674051 74674092 -102300048 + AT_rich Low_complexity Low_complexity 1 41 0 248 257 29 0 chrX 74674181 74674251 -102299889 - L1MC4 LINE L1 -1339 6703 6632 1341 217 97 26 chrX 74674257 74674785 -102299355 - MSTA LTR MaLR 0 428 132 524 163 0 11 chrX 74674904 74674996 -102299144 - MSTA LTR MaLR -337 91 1 1222 254 17 7 chrX 74674996 74675283 -102298857 - MLT1F1 LTR MaLR -277 290 1 251 232 0 0 chrX 74675412 74675468 -102298672 - L1MC4 LINE L1 -1338 6704 6649 465 252 81 47 chrX 74675492 74675790 -102298350 + L1MC4a LINE L1 5702 6009 -1799 740 356 69 40 chrX 74676695 74677318 -102296822 + L2 LINE L2 2360 3011 -261 248 370 128 32 chrX 74677479 74677698 -102296442 + L2 LINE L2 3030 3269 -3 488 272 52 24 chrX 74677769 74677982 -102296158 + L1ME3 LINE L1 5937 6155 -7 463 318 40 17 chrX 74678027 74678203 -102295937 + MIR SINE MIR 42 221 -41 2173 116 0 0 chrX 74678205 74678513 -102295627 + AluSq SINE Alu 1 308 0 1722 191 53 90 chrX 74678857 74679381 -102294759 - MLT1D LTR MaLR 0 505 1 341 301 95 0 chrX 74679980 74680126 -102294014 + MIR3 SINE MIR 2 160 -48 1230 62 31 0 chrX 74680262 74680423 -102293717 - AluY SINE Alu 0 311 146 182 261 65 0 chrX 74680827 74680873 -102293267 + L3 LINE CR1 1526 1574 -3 725 319 27 19 chrX 74682327 74682587 -102291553 - MIR SINE MIR 0 262 1 672 268 13 0 chrX 74682759 74682916 -102291224 - L2 LINE L2 -685 2629 2471 746 274 28 44 chrX 74682938 74683373 -102290767 + L1M4 LINE L1 3192 3619 -2527 1517 147 0 53 chrX 74683760 74684026 -102290114 + AluSx SINE Alu 43 294 -18 228 73 0 0 chrX 74684038 74684079 -102290061 + LTR66 LTR ERVL 398 438 -172 194 170 0 21 chrX 74684086 74684133 -102290007 + (TA)n Simple_repeat Simple_repeat 1 46 0 249 267 47 0 chrX 74684146 74684232 -102289908 - L1MC4 LINE L1 -1339 6703 6614 223 351 53 8 chrX 74684429 74684560 -102289580 + L2 LINE L2 3113 3249 -23 9129 194 17 8 chrX 74684843 74686630 -102287510 - L1PA15 LINE L1 -3 6162 4337 4725 37 0 3 chrX 74686630 74687199 -102286941 - L1PA5 LINE L1 0 6154 5588 9129 194 17 8 chrX 74687199 74688282 -102285858 - L1PA15 LINE L1 -1828 4337 3264 3487 93 22 0 chrX 74688282 74688787 -102285353 - L1PA10 LINE L1 0 6168 5653 2022 33 0 0 chrX 74688887 74689132 -102285008 + L1PA2 LINE L1 5909 6153 -2 1842 208 129 81 chrX 74689136 74690312 -102283828 + L1MC2 LINE L1 5122 6333 -11 314 246 100 87 chrX 74690302 74690714 -102283426 + L1M4b LINE L1 1367 1891 -5056 * 399 243 57 16 chrX 74690720 74690928 -102283212 + L1M4b LINE L1 2012 2479 -4479 * 1542 208 17 14 chrX 74690927 74691364 -102282776 + L1MD2 LINE L1 5745 6337 -22 279 241 58 0 chrX 74691372 74691459 -102282681 + L1M4b LINE L1 3287 3378 -3579 808 294 62 12 chrX 74691462 74691965 -102282175 + L1M4b LINE L1 3450 3977 -2980 383 158 0 13 chrX 74691972 74692048 -102282092 - L1P LINE L1 -2580 3566 3492 273 254 0 0 chrX 74692044 74692103 -102282037 + L1M4b LINE L1 4380 4438 -2519 * 896 220 22 4 chrX 74692103 74692335 -102281805 + L1MB4 LINE L1 5945 6180 0 10750 190 102 13 chrX 74692702 74692905 -102281235 + L1M1 LINE L1 5 189 -7376 1426 201 10 14 chrX 74692905 74693198 -102280942 - AluJo SINE Alu -18 294 3 10750 190 102 13 chrX 74693198 74695126 -102279014 + L1M1 LINE L1 189 2325 -5240 * 27617 130 50 61 chrX 74695120 74700643 -102273497 + L1P3 LINE L1 13 5465 -707 2096 133 18 55 chrX 74700633 74700928 -102273212 + L1M1 LINE L1 2797 3102 -4463 * 1914 153 3 0 chrX 74700928 74701215 -102272925 + AluSq SINE Alu 1 288 -25 186 43 0 0 chrX 74701224 74701247 -102272893 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2096 133 18 55 chrX 74701247 74701392 -102272748 + L1M1 LINE L1 3110 3230 -4335 697 82 0 0 chrX 74701392 74701489 -102272651 + AluS SINE Alu 1 97 -216 3304 100 0 19 chrX 74701596 74702265 -102271875 - L1P4 LINE L1 -459 5709 5049 * 19492 196 20 12 chrX 74702262 74704504 -102269636 + L1PA13 LINE L1 875 3097 -3066 2226 60 0 102 chrX 74704504 74704836 -102269304 + AluY SINE Alu 1 298 -13 19492 196 20 12 chrX 74704836 74705193 -102268947 + L1PA13 LINE L1 3097 3450 -2713 267 54 0 0 chrX 74705193 74705230 -102268910 + (CAA)n Simple_repeat Simple_repeat 2 38 0 19492 196 20 12 chrX 74705230 74707869 -102266271 + L1PA13 LINE L1 3450 6162 -1 10959 209 17 15 chrX 74707861 74711460 -102262680 + L1M1 LINE L1 2717 6331 -1234 * 2701 165 65 14 chrX 74711458 74712015 -102262125 - L1MA4A LINE L1 -202 6101 5517 * 1891 208 36 44 chrX 74712015 74712539 -102261601 - L1MA9 LINE L1 -54 6258 5739 673 253 6 13 chrX 74712570 74712728 -102261412 + MLT1B LTR MaLR 232 388 -2 441 292 58 22 chrX 74712730 74712956 -102261184 - L1ME LINE L1 -555 5541 5308 16839 219 10 14 chrX 74712959 74718834 -102255306 - L1PA13 LINE L1 -5 6809 950 627 284 56 31 chrX 74718843 74719287 -102254853 - L1ME LINE L1 -768 5312 4858 14309 210 73 8 chrX 74719449 74722541 -102251599 + L1M1 LINE L1 22 3313 -4252 899 310 55 13 chrX 74722546 74722930 -102251210 - L1ME LINE L1 -5664 406 7 472 335 91 5 chrX 74723021 74723230 -102250910 - MIR SINE MIR -4 258 32 299 312 0 0 chrX 74723378 74723471 -102250669 - MIR SINE MIR -8 254 162 357 24 0 0 chrX 74723632 74723674 -102250466 + (TA)n Simple_repeat Simple_repeat 1 42 0 5388 170 14 13 chrX 74723676 74725093 -102249047 - L1MA3 LINE L1 -44 7680 6264 14083 195 65 9 chrX 74725104 74726373 -102247767 - L1MA3 LINE L1 -3265 4300 3103 441 0 0 0 chrX 74726373 74726422 -102247718 + (TG)n Simple_repeat Simple_repeat 2 50 0 14083 195 65 9 chrX 74726422 74728559 -102245581 - L1MA3 LINE L1 -4462 3103 701 380 358 5 29 chrX 74728662 74728866 -102245274 - HERV16 LTR ERVL -1664 3332 3134 2358 316 51 29 chrX 74729095 74730202 -102243938 - HERV16 LTR ERVL -1907 3089 2028 355 282 94 35 chrX 74730199 74730369 -102243771 - HERV16 LTR ERVL -3209 1787 1608 * 1691 340 42 42 chrX 74730571 74731653 -102242487 - HERV16 LTR ERVL -3688 1308 227 428 237 140 18 chrX 74731737 74731851 -102242289 + MLT1E LTR MaLR 2 129 -464 5555 247 11 7 chrX 74731851 74733066 -102241074 - HERV16 LTR ERVL -1081 4683 3464 2122 148 79 25 chrX 74733068 74733474 -102240666 - MSTA LTR MaLR 0 428 1 8473 176 29 38 chrX 74733475 74733514 -102240626 - MSTA-int LTR MaLR 0 1651 1613 1740 58 0 0 chrX 74733514 74733737 -102240403 + L1PA2 LINE L1 5933 6155 0 8473 176 29 38 chrX 74733737 74735363 -102238777 - MSTA-int LTR MaLR -38 1613 1 2416 144 31 17 chrX 74735368 74735785 -102238355 - MSTA LTR MaLR -5 423 1 2380 162 34 2 chrX 74735791 74736236 -102237904 + L1MA8 LINE L1 5799 6257 -34 630 343 14 27 chrX 74736242 74736299 -102237841 + L1ME3A LINE L1 5498 5554 -616 1552 106 0 5 chrX 74736299 74736517 -102237623 - AluSg/x SINE Alu -11 301 85 630 343 14 27 chrX 74736517 74736897 -102237243 + L1ME3A LINE L1 5554 5929 -241 24 0 0 0 chrX 74737866 74737890 -102236250 + AT_rich Low_complexity Low_complexity 1 24 0 1378 206 61 42 chrX 74737915 74738294 -102235846 + MLT1B LTR MaLR 1 386 -4 1240 242 27 0 chrX 74738294 74738550 -102235590 + Tigger7 DNA MER2_type 2 264 -469 296 195 0 91 chrX 74738551 74738628 -102235512 + Tigger7 DNA MER2_type 2390 2459 -32 2025 229 45 29 chrX 74738654 74739258 -102234882 + MLT1B-int LTR MaLR 5 715 -656 1475 258 58 0 chrX 74739416 74739776 -102234364 + MLT1B-int LTR MaLR 967 1347 -24 1498 218 45 24 chrX 74739804 74740184 -102233956 + MLT1B LTR MaLR 3 390 0 299 361 104 15 chrX 74741011 74741271 -102232869 + L3 LINE CR1 550 832 -745 1197 230 0 8 chrX 74741291 74741552 -102232588 + AluJo SINE Alu 19 277 -35 859 125 5 33 chrX 74741578 74741602 -102232538 + (GAAA)n Simple_repeat Simple_repeat 2 25 -155 363 44 0 0 chrX 74741602 74741647 -102232493 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 859 125 5 33 chrX 74741647 74741806 -102232334 + (GAAA)n Simple_repeat Simple_repeat 25 180 0 24 32 0 0 chrX 74741958 74741989 -102232151 + AT_rich Low_complexity Low_complexity 1 31 0 359 246 44 35 chrX 74742757 74742871 -102231269 + L3 LINE CR1 1215 1329 -248 414 0 0 0 chrX 74742917 74742963 -102231177 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2128 125 21 0 chrX 74743131 74743467 -102230673 - L1PA10 LINE L1 -1 6167 5825 1000 98 86 0 chrX 74743683 74743846 -102230294 - L1PA7 LINE L1 -1398 4748 4572 6977 56 7 0 chrX 74743846 74745257 -102228883 + L1PA7 LINE L1 4730 6145 -9 338 364 23 17 chrX 74745857 74746149 -102227991 - MLT1I LTR MaLR 0 409 88 718 305 132 25 chrX 74746996 74747353 -102226787 - LTR16C LTR ERVL 0 491 97 2236 83 6 21 chrX 74747499 74747826 -102226314 - L1PA8 LINE L1 0 6172 5851 2857 230 45 21 chrX 74748421 74749815 -102224325 + L1MB4 LINE L1 989 2500 -3884 472 207 35 0 chrX 74749822 74749938 -102224202 + L1 LINE L1 4402 4521 -1625 1775 201 8 28 chrX 74749939 74750333 -102223807 + L1MB4 LINE L1 3786 4171 -2211 * 3782 210 60 29 chrX 74750329 74750665 -102223475 + L1MB4 LINE L1 4757 5081 -1335 1318 226 95 19 chrX 74750665 74751033 -102223107 + MSTD LTR MaLR 1 396 0 3782 210 60 29 chrX 74751033 74752019 -102222121 + L1MB4 LINE L1 5081 6136 -280 4041 92 5 5 chrX 74752019 74752596 -102221544 + L1PA13 LINE L1 5586 6162 -1 3782 210 60 29 chrX 74752596 74752884 -102221256 + L1MB4 LINE L1 6136 6413 -3 28 48 0 0 chrX 74752978 74753020 -102221120 + AT_rich Low_complexity Low_complexity 1 42 0 282 278 185 0 chrX 74753125 74753233 -102220907 + L2 LINE L2 3144 3271 -1 462 314 92 30 chrX 74753660 74753935 -102220205 - LTR33 LTR ERVL -243 280 4 755 313 53 55 chrX 74754136 74754685 -102219455 - ERVL LTR ERVL -370 5394 4847 26 0 0 0 chrX 74754707 74754733 -102219407 + AT_rich Low_complexity Low_complexity 1 26 0 29 47 0 0 chrX 74755534 74755577 -102218563 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chrX 74755658 74755689 -102218451 + AT_rich Low_complexity Low_complexity 1 31 0 225 301 154 35 chrX 74755870 74756013 -102218127 - MIR SINE MIR -84 178 19 539 235 10 97 chrX 74756970 74757166 -102216974 + MLT2B1 LTR ERVL 114 292 -228 288 253 11 53 chrX 74757204 74757299 -102216841 + MLT2C1 LTR ERVL 259 349 -48 231 36 0 0 chrX 74757306 74757334 -102216806 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 302 45 23 0 chrX 74757333 74757377 -102216763 + (CA)n Simple_repeat Simple_repeat 1 45 0 5107 268 65 26 chrX 74758087 74759469 -102214671 + L1M2 LINE L1 2 1437 -5412 185 291 18 0 chrX 74759572 74759627 -102214513 - MIR3 SINE MIR -29 179 124 21 36 0 0 chrX 74759777 74759805 -102214335 + AT_rich Low_complexity Low_complexity 1 28 0 252 203 0 34 chrX 74759893 74759952 -102214188 + L1 LINE L1 179 235 -6078 1230 30 0 39 chrX 74760072 74760347 -102213793 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 2352 244 74 40 chrX 74760789 74762686 -102211454 + L1 LINE L1 781 2790 -3592 845 222 25 18 chrX 74762710 74762917 -102211223 + MLT2D LTR ERVL 79 282 -132 2525 255 69 22 chrX 74762918 74763941 -102210199 + L1 LINE L1 4391 5461 -921 2415 196 72 40 chrX 74763943 74764244 -102209896 + MER54A LTR ERVL 172 499 -402 756 67 25 0 chrX 74764244 74764364 -102209776 + (GA)n Simple_repeat Simple_repeat 2 124 0 2415 196 72 40 chrX 74764364 74764588 -102209552 + MER54A LTR ERVL 499 714 -187 334 232 37 0 chrX 74764607 74764771 -102209369 + (TA)n Simple_repeat Simple_repeat 1 170 0 900 233 10 5 chrX 74764786 74764992 -102209148 + MER54A LTR ERVL 695 901 0 802 188 43 136 chrX 74764995 74765093 -102209047 + L1MB3 LINE L1 5873 5978 -205 253 62 0 0 chrX 74765093 74765125 -102209015 + tRNA-Gly-GGA tRNA tRNA 8 39 -36 802 188 43 136 chrX 74765125 74765319 -102208821 + L1MB3 LINE L1 5978 6166 -17 22 56 0 0 chrX 74765425 74765461 -102208679 + AT_rich Low_complexity Low_complexity 1 36 0 426 85 0 0 chrX 74765712 74765771 -102208369 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 1085 85 23 6 chrX 74765778 74765954 -102208186 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 685 193 7 60 chrX 74766095 74766245 -102207895 + MER54A LTR ERVL 562 703 -198 2487 246 38 14 chrX 74766667 74767359 -102206781 - L1 LINE L1 -1811 4335 3628 627 315 0 6 chrX 74767367 74767548 -102206592 - MLT1A1 LTR MaLR 0 365 186 530 215 46 64 chrX 74767562 74767807 -102206333 - MLT1A1 LTR MaLR -138 258 3 1250 243 54 7 chrX 74767809 74768233 -102205907 - L1 LINE L1 -2522 3624 3181 * 5153 196 16 20 chrX 74768224 74770263 -102203877 - L1PA16 LINE L1 -16 6150 4125 299 336 8 23 chrX 74771428 74771556 -102202584 + MER34 LTR ERV1 1 126 -416 * 698 244 82 57 chrX 74771528 74771967 -102202173 + LTR48 LTR ERV1 141 787 0 663 253 60 105 chrX 74772242 74772314 -102201826 - MER34C LTR ERV1 0 542 468 3973 127 13 2 chrX 74772314 74772942 -102201198 - MER41B LTR ERV1 0 635 1 663 253 60 105 chrX 74772942 74773452 -102200688 - MER34C LTR ERV1 -74 468 9 2376 160 96 0 chrX 74774475 74774901 -102199239 - LTR24 LTR ERV1 0 467 1 7448 32 3 0 chrX 74775363 74776843 -102197297 + L1PA3 LINE L1 4673 6155 0 28 61 0 0 chrX 74777013 74777062 -102197078 + AT_rich Low_complexity Low_complexity 1 49 0 1421 290 33 20 chrX 74777066 74777614 -102196526 - L1ME1 LINE L1 -5 6161 5607 3035 85 17 52 chrX 74777614 74778074 -102196066 + MLT2A1 LTR ERVL 1 444 0 12593 80 1 5 chrX 74778074 74779724 -102194416 + HERVL-A1-A1 LTR ERVL 1 1643 -4011 * 24775 88 6 2 chrX 74779720 74782985 -102191155 + HERVL-A1-A1 LTR ERVL 2378 5654 0 3265 58 53 0 chrX 74782989 74783366 -102190774 + MLT2A1 LTR ERVL 5 408 -36 369 0 0 0 chrX 74783366 74783407 -102190733 + (TA)n Simple_repeat Simple_repeat 2 42 0 3265 58 53 0 chrX 74783407 74783446 -102190694 + MLT2A1 LTR ERVL 408 443 -1 21 57 0 0 chrX 74784578 74784613 -102189527 + AT_rich Low_complexity Low_complexity 1 35 0 2143 113 0 7 chrX 74785059 74785351 -102188789 + AluSc SINE Alu 1 290 -19 315 182 30 0 chrX 74785356 74785422 -102188718 + L1MC4 LINE L1 6636 6703 -1339 657 119 41 0 chrX 74785425 74785626 -102188514 + (TA)n Simple_repeat Simple_repeat 1 209 0 459 141 0 0 chrX 74786007 74786078 -102188062 + L1PA8 LINE L1 6093 6163 -9 2074 176 63 26 chrX 74786905 74787418 -102186722 + MLT2A2 LTR ERVL 1 554 0 2249 104 0 3 chrX 74787997 74788306 -102185834 - AluSq SINE Alu -3 310 3 2020 138 0 0 chrX 74788311 74788608 -102185532 - AluSx SINE Alu -15 297 1 674 185 20 20 chrX 74789722 74789873 -102184267 - L1MD2 LINE L1 -15 6344 6194 726 282 47 20 chrX 74789877 74790132 -102184008 - L1MD2 LINE L1 -219 6140 5879 792 256 39 37 chrX 74790132 74790515 -102183625 - L1MD2 LINE L1 -1306 4840 4457 2518 237 29 15 chrX 74790583 74791178 -102182962 + L1M1 LINE L1 16 618 -6947 1456 110 70 9 chrX 74791205 74791433 -102182707 - MLT2A1 LTR ERVL -202 242 1 7545 80 9 0 chrX 74791433 74791858 -102182282 - HERVL-A1 LTR ERVL 0 5654 5234 207 0 0 0 chrX 74791858 74791881 -102182259 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7545 80 9 0 chrX 74791881 74792431 -102181709 - HERVL-A1 LTR ERVL -420 5234 4670 11245 198 31 10 chrX 74792431 74792981 -102181159 - L1 LINE L1 -1110 6455 5918 2057 140 76 15 chrX 74792981 74793324 -102180816 - THE1B LTR MaLR 0 364 1 11245 198 31 10 chrX 74793324 74796669 -102177471 - L1 LINE L1 -1647 5918 2478 8030 228 36 18 chrX 74796675 74798416 -102175724 - L1 LINE L1 -5785 1780 8 4136 180 29 1 chrX 74798603 74799369 -102174771 + Tigger1 DNA MER2_type 105 891 -1527 2770 189 6 15 chrX 74799491 74800031 -102174109 + Tigger1 DNA MER2_type 927 1461 -957 4979 202 16 10 chrX 74800031 74801917 -102172223 - L1PA15 LINE L1 -13 6855 4961 950 252 20 6 chrX 74801914 74802403 -102171737 - L1PA15 LINE L1 -3628 3221 2531 * 8536 214 29 22 chrX 74802379 74802724 -102171416 - L1 LINE L1 -1740 5109 4768 2953 123 5 0 chrX 74802724 74803156 -102170984 - MER57B LTR ERV1 0 434 1 8536 214 29 22 chrX 74803156 74803323 -102170817 - L1 LINE L1 -2081 4768 4604 2301 98 0 3 chrX 74803323 74803629 -102170511 - AluY SINE Alu -6 305 1 8536 214 29 22 chrX 74803629 74805665 -102168475 - L1 LINE L1 -2245 4604 2539 1359 245 39 60 chrX 74806183 74806649 -102167491 - MER83B-int LTR ERV1 -878 4002 3547 * 1831 244 91 5 chrX 74806636 74807232 -102166908 - MER83B-int LTR ERV1 -3417 3079 1003 7328 127 23 1 chrX 74807247 74808322 -102165818 - L1P3 LINE L1 -5348 1113 15 4336 119 4 10 chrX 74808320 74809144 -102164996 + L1P3 LINE L1 1116 1934 -4527 * 4483 200 28 33 chrX 74809244 74809617 -102164523 + L1MA9 LINE L1 4245 4618 -1694 7435 28 24 0 chrX 74809617 74810550 -102163590 - L1PA4 LINE L1 0 6155 5235 4483 200 28 33 chrX 74810550 74811903 -102162237 + L1MA9 LINE L1 4618 5976 -336 1440 193 35 21 chrX 74811903 74812024 -102162116 + AluJb SINE Alu 1 119 -193 252 59 0 0 chrX 74812024 74812058 -102162082 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1440 193 35 21 chrX 74812058 74812226 -102161914 + AluJb SINE Alu 119 294 -18 4483 200 28 33 chrX 74812226 74812429 -102161711 + L1MA9 LINE L1 5976 6162 -150 237 33 0 0 chrX 74812429 74812459 -102161681 + (CA)n Simple_repeat Simple_repeat 2 31 0 4483 200 28 33 chrX 74812459 74812609 -102161531 + L1MA9 LINE L1 6162 6311 -1 235 274 137 0 chrX 74812630 74812732 -102161408 + L1ME LINE L1 5604 5719 -402 635 111 34 0 chrX 74812766 74812883 -102161257 - L1MA7 LINE L1 0 6291 6171 29 28 0 0 chrX 74813882 74813918 -102160222 + AT_rich Low_complexity Low_complexity 1 36 0 301 296 122 0 chrX 74814144 74814242 -102159898 + MIR SINE MIR 48 157 -105 279 0 0 0 chrX 74814998 74815029 -102159111 + (TA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chrX 74815091 74815114 -102159026 + AT_rich Low_complexity Low_complexity 1 23 0 6245 49 1 0 chrX 74815144 74815913 -102158227 + L1PA6 LINE L1 5384 6153 -1 24 0 0 0 chrX 74817916 74817940 -102156200 + AT_rich Low_complexity Low_complexity 1 24 0 226 156 0 0 chrX 74818024 74818069 -102156071 + L1MA2 LINE L1 6144 6188 -116 1425 255 34 11 chrX 74818662 74819019 -102155121 - MLT1A1 LTR MaLR 0 365 1 234 0 0 0 chrX 74821192 74821218 -102152922 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chrX 74821867 74821890 -102152250 + AT_rich Low_complexity Low_complexity 1 23 0 441 36 0 0 chrX 74822290 74822345 -102151795 + (CA)n Simple_repeat Simple_repeat 2 56 0 366 291 0 79 chrX 74822729 74822856 -102151284 - L2 LINE L2 -2 3311 3195 6574 153 31 2 chrX 74822901 74824278 -102149862 + L1M1 LINE L1 2397 3812 -3753 7218 217 22 48 chrX 74824285 74826875 -102147265 + L1P3 LINE L1 10 2533 -3928 2296 86 0 0 chrX 74826870 74827183 -102146957 - L1P LINE L1 -2504 3642 3330 * 7763 53 1 1 chrX 74827183 74828943 -102145197 + L1PA5 LINE L1 4390 6150 -4 2112 208 62 12 chrX 74828943 74829673 -102144467 + L1MCa LINE L1 1969 2737 -3689 252 149 0 43 chrX 74829673 74829720 -102144420 - MSTA LTR MaLR 0 428 384 992 169 0 0 chrX 74829720 74829874 -102144266 + AluJb SINE Alu 1 154 -158 24 32 0 0 chrX 74830173 74830204 -102143936 + AT_rich Low_complexity Low_complexity 1 31 0 6029 151 12 4 chrX 74833838 74834979 -102139161 - L1MA2 LINE L1 0 6304 5155 417 276 14 105 chrX 74835110 74835320 -102138820 + MLT1H LTR MaLR 38 228 -321 273 259 90 43 chrX 74835462 74835610 -102138530 + MLT1J2 LTR MaLR 308 549 0 527 355 25 0 chrX 74835707 74835910 -102138230 - MIR SINE MIR -10 252 45 990 339 36 33 chrX 74836054 74836903 -102137237 + L1MEc LINE L1 35 886 -5510 2166 121 3 0 chrX 74836905 74837202 -102136938 + AluSq SINE Alu 11 308 -5 1319 219 60 0 chrX 74837235 74837518 -102136622 - AluJo SINE Alu 0 302 3 22 70 0 0 chrX 74838121 74838164 -102135976 + AT_rich Low_complexity Low_complexity 1 43 0 1088 188 0 0 chrX 74838441 74838633 -102135507 - Tigger1 DNA MER2_type 0 2418 2227 4992 154 33 9 chrX 74838635 74839551 -102134589 + L1MA4A LINE L1 5358 6295 -8 1118 116 0 193 chrX 74839551 74839852 -102134288 - Tigger1 DNA MER2_type -185 2233 1991 331 235 35 24 chrX 74839869 74839954 -102134186 + MER50 LTR ERV1 17 102 -632 343 286 246 6 chrX 74840221 74840392 -102133748 + MER50 LTR ERV1 500 711 -23 2072 296 30 44 chrX 74840682 74841701 -102132439 + MER50-int LTR ERV1 682 1804 -5401 21 0 0 0 chrX 74841774 74841795 -102132345 + AT_rich Low_complexity Low_complexity 1 21 0 6086 150 36 10 chrX 74841805 74843374 -102130766 - L1MA1 LINE L1 -5 6297 4687 7495 231 28 12 chrX 74843374 74844929 -102129211 - L1M1 LINE L1 -5888 1677 93 230 54 0 27 chrX 74844929 74844966 -102129174 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 7495 231 28 12 chrX 74844966 74845045 -102129095 - L1M1 LINE L1 -7472 93 17 343 319 90 72 chrX 74845302 74845801 -102128339 + MER50-int LTR ERV1 2123 2630 -4575 26671 82 2 14 chrX 74845884 74850527 -102123613 - L1PA7 LINE L1 -3 6151 1566 1205 194 40 0 chrX 74850627 74850854 -102123286 - L1MA1 LINE L1 -1925 4221 3986 515 298 129 0 chrX 74851040 74851218 -102122922 + MIR SINE MIR 12 212 -50 195 339 0 0 chrX 74851218 74851283 -102122857 + MIR SINE MIR 185 249 -13 511 318 14 7 chrX 74851681 74851829 -102122311 + MIR SINE MIR 36 184 -78 447 314 49 44 chrX 74852079 74852629 -102121511 - L1M4 LINE L1 -2137 4009 3457 24 0 0 0 chrX 74853921 74853945 -102120195 + AT_rich Low_complexity Low_complexity 1 24 0 2267 192 50 109 chrX 74854189 74854922 -102119218 - LTR8A LTR ERV1 0 727 38 1400 273 72 44 chrX 74854994 74855557 -102118583 - MER77 LTR ERV1 -6 599 52 6436 72 5 5 chrX 74855672 74857165 -102116975 - L1PA8A LINE L1 -13 6118 4630 651 26 0 0 chrX 74857192 74857270 -102116870 - L1PA3 LINE L1 -3 6152 6075 10613 113 6 25 chrX 74857270 74858979 -102115161 - L1PA8A LINE L1 -1509 4637 2961 482 114 0 57 chrX 74858978 74859066 -102115074 + L1PA8A LINE L1 2865 2947 -3199 * 406 338 38 0 chrX 74859311 74859471 -102114669 + MIR SINE MIR 48 213 -49 375 302 78 50 chrX 74859487 74859884 -102114256 - LTR52 LTR ERVL -6 415 8 267 349 81 51 chrX 74860071 74860306 -102113834 + L2 LINE L2 2812 3053 -219 351 44 0 0 chrX 74860339 74860384 -102113756 + (CA)n Simple_repeat Simple_repeat 1 45 0 1776 149 79 9 chrX 74860449 74860764 -102113376 + MER1B DNA MER1_type 1 337 0 217 349 15 0 chrX 74860841 74860907 -102113233 + L2 LINE L2 3191 3257 -15 22 0 0 0 chrX 74860968 74860990 -102113150 + AT_rich Low_complexity Low_complexity 1 22 0 381 136 11 23 chrX 74862059 74862147 -102111993 - L1MA10 LINE L1 -3 6331 6245 5857 155 55 38 chrX 74862147 74862392 -102111748 + Tigger3b DNA MER2_type 3 242 -2786 1697 159 73 25 chrX 74862392 74862750 -102111390 - THE1C LTR MaLR 0 375 1 8759 149 20 43 chrX 74862750 74864364 -102109776 - THE1C-int LTR MaLR 0 1580 4 1518 152 112 37 chrX 74864367 74864716 -102109424 - THE1C LTR MaLR 0 375 1 5857 155 55 38 chrX 74864716 74865672 -102108468 + Tigger3b DNA MER2_type 243 1229 -2 2110 258 8 24 chrX 74865673 74866267 -102107873 - L1ME1 LINE L1 -76 6159 5575 406 317 16 0 chrX 74866349 74866535 -102107605 - L1ME1 LINE L1 -3457 2758 2570 1539 277 36 54 chrX 74866535 74867087 -102107053 - MLT1E2 LTR MaLR 0 626 85 541 251 147 0 chrX 74867118 74867329 -102106811 - L1ME1 LINE L1 -5154 1242 1001 2461 154 29 12 chrX 74867346 74867756 -102106384 - MSTB LTR MaLR -9 417 1 522 270 46 11 chrX 74867792 74867966 -102106174 - L1ME1 LINE L1 -5621 775 596 4552 102 67 26 chrX 74867969 74868746 -102105394 + MER4A-int LTR ERV1 5790 6598 0 507 144 89 0 chrX 74868747 74868837 -102105303 + MER4A LTR ERV1 1 98 -566 1667 159 3 72 chrX 74868837 74869208 -102104932 + MER4A LTR ERV1 261 664 0 17253 159 20 10 chrX 74869210 74870909 -102103231 - L1M1 LINE L1 -4667 2898 1167 2343 116 32 54 chrX 74870909 74871316 -102102824 - MER48 LTR ERV1 0 398 1 17253 159 20 10 chrX 74871316 74872480 -102101660 - L1M1 LINE L1 -6398 1167 16 653 273 0 37 chrX 74872556 74872744 -102101396 + L1ME LINE L1 5514 5693 -473 242 279 130 58 chrX 74874849 74875003 -102099137 + L2 LINE L2 2288 2452 -862 1225 168 9 5 chrX 74875925 74876139 -102098001 + Tigger3(Golem) DNA MER2_type 2814 3028 -1 338 306 77 6 chrX 74876436 74876606 -102097534 + L1ME4a LINE L1 5541 5722 -399 1613 24 0 39 chrX 74876748 74877012 -102097128 + L1PA2 LINE L1 5938 6155 0 1763 134 3 17 chrX 74877057 74877348 -102096792 + AluSx SINE Alu 3 289 -23 2337 82 0 16 chrX 74877371 74877677 -102096463 - AluSq SINE Alu -10 303 3 384 274 70 65 chrX 74877736 74878108 -102096032 + L1ME4a LINE L1 5726 6099 -22 2203 116 0 0 chrX 74878127 74878421 -102095719 + AluSx SINE Alu 1 294 -18 249 218 0 0 chrX 74878815 74878870 -102095270 + (TA)n Simple_repeat Simple_repeat 2 56 0 1050 215 55 14 chrX 74879838 74880216 -102093924 + MLT2B1 LTR ERVL 1 362 -158 180 0 0 0 chrX 74880216 74880236 -102093904 + (CA)n Simple_repeat Simple_repeat 2 21 0 431 62 0 16 chrX 74880236 74880300 -102093840 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 1050 215 55 14 chrX 74880300 74880335 -102093805 + MLT2B1 LTR ERVL 361 520 0 231 219 47 0 chrX 74880431 74880495 -102093645 - LTR66 LTR ERVL -171 439 373 25 0 0 0 chrX 74880527 74880552 -102093588 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chrX 74880577 74880616 -102093524 + AT_rich Low_complexity Low_complexity 1 39 0 1427 314 29 24 chrX 74880718 74881307 -102092833 + L1PA15 LINE L1 2 593 -6988 3960 304 25 45 chrX 74881351 74883236 -102090904 + L1PA15 LINE L1 1036 2884 -4697 2748 215 37 4 chrX 74883248 74883930 -102090210 + L1PA15 LINE L1 3076 3777 -3807 3002 197 31 34 chrX 74883952 74885250 -102088890 + L1PA15 LINE L1 5937 7227 -376 392 178 37 0 chrX 74885251 74885358 -102088782 + (TA)n Simple_repeat Simple_repeat 1 111 0 2304 146 5 8 chrX 74885358 74885743 -102088397 + L1PA15 LINE L1 7220 7603 0 2431 270 89 15 chrX 74886252 74887591 -102086549 - L1MEc LINE L1 -2687 3528 2131 * 5781 155 44 27 chrX 74887585 74889523 -102084617 - L1MA4A LINE L1 0 6303 4320 495 264 8 0 chrX 74889619 74889744 -102084396 + MER58B DNA MER1_type 187 312 -29 766 220 4 85 chrX 74889744 74889980 -102084160 + MLT1B LTR MaLR 1 217 -173 3545 169 19 43 chrX 74889991 74890772 -102083368 + L1MA8 LINE L1 5530 6291 0 3617 205 44 40 chrX 74890783 74891949 -102082191 + L1MB4 LINE L1 5015 6179 -1 955 199 10 6 chrX 74892103 74892317 -102081823 + L1MB4 LINE L1 5722 5944 -226 23 54 0 0 chrX 74892456 74892493 -102081647 + AT_rich Low_complexity Low_complexity 1 37 0 295 306 0 48 chrX 74893406 74893530 -102080610 - L2 LINE L2 -1 3312 3195 312 277 80 0 chrX 74893813 74893925 -102080215 - MLT1L LTR MaLR 0 615 495 394 227 0 52 chrX 74894119 74894216 -102079924 - MLT1L LTR MaLR -380 235 144 203 179 0 0 chrX 74894573 74894612 -102079528 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1923 113 4 25 chrX 74894753 74895068 -102079072 - AluSx SINE Alu 0 322 14 1596 119 54 99 chrX 74895167 74895461 -102078679 + AluSx SINE Alu 1 281 -31 415 325 60 32 chrX 74895572 74895824 -102078316 + MIR SINE MIR 2 260 -2 1523 231 71 53 chrX 74895894 74896384 -102077756 + MLT1D LTR MaLR 3 501 -4 404 297 9 18 chrX 74896511 74896622 -102077518 - L2 LINE L2 0 3272 3163 465 332 92 11 chrX 74896638 74896900 -102077240 - L2 LINE L2 -793 2521 2239 436 329 111 29 chrX 74896944 74897360 -102076780 - L2 LINE L2 -1247 2067 1618 180 230 81 69 chrX 74897392 74897479 -102076661 - L2 LINE L2 -2764 550 463 1403 260 68 32 chrX 74897567 74898010 -102076130 - MER74B LTR ERVL -75 547 89 498 314 108 5 chrX 74898220 74898424 -102075716 - MIR SINE MIR -34 228 4 280 193 0 0 chrX 74898588 74898645 -102075495 + Alu SINE Alu 243 299 -3 216 298 147 41 chrX 74898678 74898896 -102075244 + L2 LINE L2 2007 2247 -1067 9279 26 1 0 chrX 74899833 74901334 -102072806 - L1PA3 LINE L1 -376 5779 4278 3276 28 0 3 chrX 74901334 74901722 -102072418 + L1PA3 LINE L1 5764 6152 -3 2038 169 47 31 chrX 74903001 74903537 -102070603 - MLT2A2 LTR ERVL 0 554 5 40285 102 15 5 chrX 74903552 74907809 -102066331 - HERVL-A2-A2 LTR ERVL -5 5649 1321 2036 126 0 7 chrX 74907809 74908102 -102066038 + AluSx SINE Alu 5 295 -17 40285 102 15 5 chrX 74908102 74909436 -102064704 - HERVL-A2-A2 LTR ERVL -4333 1321 2 2107 179 32 28 chrX 74909437 74909986 -102064154 - MLT2A2 LTR ERVL 0 554 1 18145 221 20 33 chrX 74910258 74916027 -102058113 + L1MA1 LINE L1 1 5722 -1999 558 169 0 0 chrX 74916027 74916116 -102058024 - AluSg/x SINE Alu -18 291 203 18145 221 20 33 chrX 74916116 74918090 -102056050 + L1MA1 LINE L1 5722 7721 0 22 0 0 0 chrX 74918090 74918112 -102056028 + AT_rich Low_complexity Low_complexity 1 22 0 3522 117 2 4 chrX 74918298 74918810 -102055330 + MER9 LTR ERVK 1 511 0 4052 217 21 13 chrX 74919092 74920650 -102053490 + L1MB7 LINE L1 4616 6184 0 2241 96 3 3 chrX 74920771 74921064 -102053076 + AluSc SINE Alu 3 295 -14 206 182 23 0 chrX 74922273 74922317 -102051823 + (TAA)n Simple_repeat Simple_repeat 1 45 0 667 262 27 5 chrX 74922327 74922514 -102051626 - MIR SINE MIR 0 262 72 1925 176 0 0 chrX 74922817 74923129 -102051011 - AluSx SINE Alu 0 312 1 3605 146 48 22 chrX 74923532 74924202 -102049938 + Tigger2 DNA MER2_type 2 688 -2030 4976 252 18 14 chrX 74924213 74927400 -102046740 + L1PA15 LINE L1 2 3658 -3139 * 5052 173 16 19 chrX 74927393 74928556 -102045584 + L1PA15 LINE L1 5668 6815 -1 399 133 33 0 chrX 74928561 74928621 -102045519 + Tigger2 DNA MER2_type 683 744 -1974 1182 167 34 64 chrX 74928689 74928953 -102045187 + Tigger2 DNA MER2_type 2463 2718 0 22 35 0 0 chrX 74930486 74930515 -102043625 + AT_rich Low_complexity Low_complexity 1 29 0 2278 106 3 0 chrX 74930551 74930863 -102043277 - AluSq SINE Alu 0 313 1 21 0 0 0 chrX 74930880 74930901 -102043239 + AT_rich Low_complexity Low_complexity 1 21 0 740 155 56 6 chrX 74931313 74931474 -102042666 - L1MA4 LINE L1 -3 6297 6129 1021 164 6 1 chrX 74931474 74931670 -102042470 + L1M4 LINE L1 5446 5642 -532 535 241 13 38 chrX 74931875 74932033 -102042107 + MER87 LTR ERV1 220 373 -168 16174 186 33 70 chrX 74932044 74933433 -102040707 + L1M1 LINE L1 15 1454 -6111 2453 70 0 22 chrX 74933433 74933746 -102040394 + AluSx SINE Alu 1 306 -6 16174 186 33 70 chrX 74933746 74935451 -102038689 + L1M1 LINE L1 1454 3220 -4345 216 0 0 0 chrX 74935451 74935475 -102038665 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 16174 186 33 70 chrX 74935475 74935678 -102038462 + L1M1 LINE L1 3220 3429 -4136 1584 171 3 58 chrX 74935678 74936006 -102038134 - AluSg SINE Alu 0 310 1 16174 186 33 70 chrX 74936006 74936538 -102037602 + L1M1 LINE L1 3429 3706 -3859 1975 91 8 0 chrX 74936542 74936807 -102037333 + THE1B-int LTR MaLR 1314 1580 0 611 80 0 0 chrX 74936807 74936895 -102037245 + THE1B-int LTR MaLR 1493 1580 0 2171 134 22 27 chrX 74936895 74937261 -102036879 + THE1B LTR MaLR 1 364 0 4834 124 5 3 chrX 74937261 74938000 -102036140 + L1PB1 LINE L1 5404 6144 -7 39 68 0 0 chrX 74938136 74938210 -102035930 + AT_rich Low_complexity Low_complexity 1 74 0 324 316 21 78 chrX 74938612 74938805 -102035335 + MER5A DNA MER1_type 8 189 0 271 301 68 29 chrX 74938919 74939022 -102035118 - L3 LINE CR1 -14 1563 1457 3764 210 34 10 chrX 74939083 74940263 -102033877 - L1MB7 LINE L1 -7 6177 4968 297 320 39 19 chrX 74940271 74940427 -102033713 - L3 LINE CR1 -187 1390 1232 263 241 193 0 chrX 74940507 74940590 -102033550 - L3 LINE CR1 -576 1001 903 24 53 0 0 chrX 74940597 74940635 -102033505 + AT_rich Low_complexity Low_complexity 1 38 0 198 395 68 16 chrX 74940764 74940954 -102033186 + L2 LINE L2 2569 2768 -546 339 341 38 21 chrX 74940975 74941135 -102033005 + MIR SINE MIR 40 200 -62 1776 171 10 7 chrX 74941665 74941963 -102032177 - AluJb SINE Alu -13 299 1 1403 284 29 16 chrX 74942361 74942808 -102031332 - LTR40c LTR ERVL -12 453 1 434 309 16 8 chrX 74946223 74946346 -102027794 - L2 LINE L2 0 3272 3149 754 251 66 74 chrX 74946596 74946959 -102027181 - L1MDa LINE L1 -6164 376 17 351 0 0 0 chrX 74947685 74947724 -102026416 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chrX 74947743 74947774 -102026366 + AT_rich Low_complexity Low_complexity 1 31 0 196 290 32 32 chrX 74948305 74948367 -102025773 - MIR SINE MIR -109 99 38 312 83 0 0 chrX 74948489 74948537 -102025603 + (CA)n Simple_repeat Simple_repeat 1 48 0 458 350 200 29 chrX 74949278 74949886 -102024254 - L2 LINE L2 -1388 1926 1423 2040 119 0 0 chrX 74949886 74950164 -102023976 + AluSx SINE Alu 1 278 -34 879 94 0 0 chrX 74950169 74950296 -102023844 + (GAAA)n Simple_repeat Simple_repeat 2 128 0 458 350 200 29 chrX 74950296 74950750 -102023390 - L2 LINE L2 -1894 1420 675 1913 153 60 40 chrX 74950782 74950978 -102023162 + MLT1B LTR MaLR 1 191 -199 1627 176 118 39 chrX 74950978 74951410 -102022730 - MER31B LTR ERV1 0 466 1 1913 153 60 40 chrX 74951410 74951593 -102022547 + MLT1B LTR MaLR 191 388 -2 1949 211 14 19 chrX 74951701 74952184 -102021956 + L1MA7 LINE L1 5794 6274 -17 31 0 0 0 chrX 74952184 74952215 -102021925 + AT_rich Low_complexity Low_complexity 1 31 0 180 179 0 0 chrX 74952285 74952324 -102021816 + (TAA)n Simple_repeat Simple_repeat 3 41 0 635 258 127 44 chrX 74952338 74952567 -102021573 - MIR SINE MIR -14 248 1 2299 121 39 14 chrX 74952918 74953273 -102020867 + THE1B LTR MaLR 1 364 0 11509 102 5 0 chrX 74953275 74954846 -102019294 + THE1B-int LTR MaLR 3 1580 0 2050 160 29 14 chrX 74954846 74955190 -102018950 + THE1B LTR MaLR 1 349 -15 22 70 0 0 chrX 74956725 74956768 -102017372 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chrX 74958080 74958117 -102016023 + AT_rich Low_complexity Low_complexity 1 37 0 2113 231 67 76 chrX 74958435 74959162 -102014978 + MER50 LTR ERV1 14 734 0 343 336 101 0 chrX 74959317 74959436 -102014704 + L2 LINE L2 3109 3239 -33 216 361 91 19 chrX 74959929 74960137 -102014003 - L2 LINE L2 -219 3053 2831 5149 117 151 44 chrX 74960235 74961232 -102012908 - MER52C LTR ERV1 0 1278 176 226 302 86 9 chrX 74961344 74961460 -102012680 + MIR SINE MIR 128 252 -10 2081 122 0 7 chrX 74962316 74962610 -102011530 + AluSx SINE Alu 1 292 -20 22 35 0 0 chrX 74962951 74962980 -102011160 + AT_rich Low_complexity Low_complexity 1 29 0 4491 134 39 44 chrX 74963111 74963909 -102010231 + LTR25 LTR ERV1 1 794 0 2253 112 26 9 chrX 74964300 74964649 -102009491 - THE1A LTR MaLR 0 355 1 1060 135 16 11 chrX 74964652 74964837 -102009303 - MSTA-int LTR MaLR -1465 186 1 1810 158 127 21 chrX 74964837 74965224 -102008916 - MSTA LTR MaLR 0 428 1 502 285 42 14 chrX 74965249 74965393 -102008747 - MLT2D LTR ERVL -51 363 216 476 242 24 0 chrX 74965428 74965552 -102008588 + L1MA9 LINE L1 6135 6261 -51 423 143 13 0 chrX 74965585 74965662 -102008478 + MER116 DNA Mariner 1 78 -2 281 228 13 13 chrX 74966453 74966532 -102007608 - HsTC2 DNA Tc2 -1819 79 1 10679 40 0 1 chrX 74966676 74968742 -102005398 - L1PA4 LINE L1 -3 6152 4088 2039 151 0 0 chrX 74968802 74969101 -102005039 + AluSx SINE Alu 1 299 -13 5438 183 32 14 chrX 74969498 74970381 -102003759 - L1PA16 LINE L1 -9 6157 5292 2401 113 34 6 chrX 74970381 74970735 -102003405 - THE1B LTR MaLR 0 364 1 5438 183 32 14 chrX 74970735 74971285 -102002855 - L1PA16 LINE L1 -874 5292 4754 353 0 34 34 chrX 74971285 74971344 -102002796 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 5438 183 32 14 chrX 74971344 74972012 -102002128 - L1PA16 LINE L1 -1412 4754 4018 1888 120 33 0 chrX 74972008 74972307 -102001833 - L1PB1 LINE L1 -81 6070 5762 * 900 109 0 0 chrX 74972302 74972430 -102001710 + L1PB1 LINE L1 5635 5762 -389 * 248 289 171 13 chrX 74972480 74972632 -102001508 - MLT1F1 LTR MaLR -7 560 385 1230 185 28 37 chrX 74972723 74973047 -102001093 + Charlie1 DNA MER1_type 1958 2278 -483 7938 224 19 11 chrX 74973057 74974999 -101999141 + L1P LINE L1 3388 5343 -803 1406 110 5 5 chrX 74974999 74975199 -101998941 + AluSg/x SINE Alu 91 290 -22 854 202 37 67 chrX 74975206 74975582 -101998558 + Charlie1 DNA MER1_type 2349 2713 -48 4499 204 45 18 chrX 74975590 74976867 -101997273 - L1MB3 LINE L1 0 6183 4846 2108 147 11 6 chrX 74976867 74977222 -101996918 + L1PA13 LINE L1 5793 6149 -14 4499 204 45 18 chrX 74977222 74977324 -101996816 - L1MB3 LINE L1 -1337 4846 4748 1691 128 4 0 chrX 74977710 74977968 -101996172 - L1PA8 LINE L1 -15 6157 5899 338 175 49 14 chrX 74978015 74978129 -101996011 + MER34 LTR ERV1 435 537 -5 2044 222 32 25 chrX 74978137 74978690 -101995450 - L1MB3 LINE L1 -1402 4744 4188 1100 248 37 25 chrX 74978874 74979197 -101994943 - LTR43 LTR ERV1 -142 460 134 234 0 0 0 chrX 74979283 74979309 -101994831 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 352 130 29 14 chrX 74979668 74979737 -101994403 - LTR60 LTR ERV1 -516 70 1 392 233 11 0 chrX 74979737 74979827 -101994313 - L1MB3 LINE L1 -1954 4192 4102 24 77 0 0 chrX 74980903 74980955 -101993185 + AT_rich Low_complexity Low_complexity 1 52 0 556 238 53 31 chrX 74981362 74981589 -101992551 + LTR37B LTR ERV1 233 464 -4 23 0 0 0 chrX 74982646 74982669 -101991471 + AT_rich Low_complexity Low_complexity 1 23 0 661 207 40 6 chrX 74983243 74983417 -101990723 + MER53 DNA DNA 4 183 -6 558 199 45 28 chrX 74983259 74983435 -101990705 - MER53 DNA DNA -10 179 1 * 371 326 97 56 chrX 74985412 74985969 -101988171 + L1MC4a LINE L1 4874 5449 -672 531 281 101 14 chrX 74985975 74986192 -101987948 + MIR SINE MIR 27 262 0 510 329 52 62 chrX 74986224 74986689 -101987451 + L1MC4a LINE L1 5566 6025 -96 273 202 192 58 chrX 74986750 74986824 -101987316 + L2 LINE L2 3195 3288 -25 2407 88 0 0 chrX 74986824 74987121 -101987019 - AluSx SINE Alu -13 299 3 273 202 192 58 chrX 74987121 74987150 -101986990 + L2 LINE L2 3288 3312 -1 378 0 0 0 chrX 74987591 74987633 -101986507 + (TG)n Simple_repeat Simple_repeat 1 42 0 727 258 0 0 chrX 74988236 74988395 -101985745 + MIR SINE MIR 2 160 -102 1760 332 66 31 chrX 74989303 74990413 -101983727 + L2 LINE L2 2174 3313 0 13453 179 33 9 chrX 74991055 74992556 -101981584 - L1M1 LINE L1 -743 6822 5358 1994 138 13 56 chrX 74992556 74992948 -101981192 + THE1C LTR MaLR 1 375 0 13453 179 33 9 chrX 74992948 74993257 -101980883 - L1M1 LINE L1 -2207 5358 5058 204 40 0 0 chrX 74993257 74993282 -101980858 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 13453 179 33 9 chrX 74993282 74996150 -101977990 - L1M1 LINE L1 -2507 5058 2190 653 179 107 97 chrX 74996121 74996411 -101977729 - L1MCa LINE L1 -4079 2347 2055 * 1087 199 83 21 chrX 74996421 74996540 -101977600 - L1MCa LINE L1 -4423 2003 1893 315 0 0 0 chrX 74996540 74996575 -101977565 + (TA)n Simple_repeat Simple_repeat 2 36 0 1087 199 83 21 chrX 74996575 74997020 -101977120 - L1MCa LINE L1 -4533 1893 1308 238 64 0 43 chrX 74997024 74997071 -101977069 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 44144 41 3 1 chrX 74997071 75003193 -101970947 - L1PA4 LINE L1 -24 6131 3 2568 202 47 180 chrX 75003210 75003441 -101970699 - L1MCa LINE L1 -5117 1309 1049 1431 215 7 17 chrX 75003441 75003729 -101970411 + AluJo SINE Alu 2 286 -26 2568 202 47 180 chrX 75003729 75005005 -101969135 - L1MCa LINE L1 -5377 1049 2 23 68 0 0 chrX 75005033 75005077 -101969063 + AT_rich Low_complexity Low_complexity 1 44 0 317 232 128 62 chrX 75005277 75005488 -101968652 - L1M4 LINE L1 -2756 3390 3166 24 32 0 0 chrX 75005612 75005643 -101968497 + AT_rich Low_complexity Low_complexity 1 31 0 1692 150 73 3 chrX 75005694 75005980 -101968160 - AluSx SINE Alu -6 306 1 423 379 10 0 chrX 75005987 75006190 -101967950 - L1M4 LINE L1 -3010 3136 2932 24 32 0 0 chrX 75006551 75006582 -101967558 + AT_rich Low_complexity Low_complexity 1 31 0 742 218 7 0 chrX 75006639 75006781 -101967359 + L1PA13 LINE L1 1436 1578 -5209 1921 136 7 20 chrX 75007594 75007895 -101966245 + AluSx SINE Alu 1 297 -15 2043 107 0 7 chrX 75008123 75008403 -101965737 - AluSq SINE Alu -22 291 14 251 288 0 0 chrX 75008417 75008476 -101965664 + MIR SINE MIR 57 115 -93 3323 197 45 3 chrX 75008788 75009386 -101964754 + L1PA13 LINE L1 3 625 -6162 * 15218 192 33 9 chrX 75009372 75010648 -101963492 + L1PA13 LINE L1 2411 3654 -3160 1952 161 0 3 chrX 75010648 75010952 -101963188 + AluSx SINE Alu 1 303 -9 15218 192 33 9 chrX 75010952 75013971 -101960169 + L1PA13 LINE L1 3654 6810 -4 308 148 0 0 chrX 75014732 75014786 -101959354 - MADE1 DNA Mariner -26 54 1 392 370 50 35 chrX 75016253 75016715 -101957425 + L1M2a LINE L1 1539 2007 -5161 424 299 236 24 chrX 75016906 75017160 -101956980 + MLT1E LTR MaLR 225 532 -61 8131 203 13 11 chrX 75017164 75017442 -101956698 + L1PBa LINE L1 69 345 -6518 2166 125 3 3 chrX 75017442 75017747 -101956393 + AluSx SINE Alu 1 305 -7 8131 203 13 11 chrX 75017747 75019754 -101954386 + L1PBa LINE L1 345 1644 -5219 6613 76 9 67 chrX 75019792 75020806 -101953334 + SVA Other Other 432 1386 0 744 170 0 0 chrX 75020830 75020965 -101953175 + L1PBb LINE L1 750 884 -5320 270 224 0 0 chrX 75020969 75021027 -101953113 - MSTA LTR MaLR -370 58 1 43 0 0 0 chrX 75021934 75021977 -101952163 + AT_rich Low_complexity Low_complexity 1 43 0 295 193 0 18 chrX 75023198 75023255 -101950885 - L2 LINE L2 0 3313 3258 347 209 162 61 chrX 75023778 75023926 -101950214 - MIR SINE MIR 0 262 100 23 0 0 0 chrX 75023959 75023982 -101950158 + AT_rich Low_complexity Low_complexity 1 23 0 199 216 0 0 chrX 75024536 75024573 -101949567 - L2 LINE L2 0 3272 3236 2698 145 14 2 chrX 75024754 75025175 -101948965 - MSTA LTR MaLR -2 426 1 1716 32 0 9 chrX 75025801 75026019 -101948121 + L1PA4 LINE L1 5940 6155 0 2044 255 37 38 chrX 75027317 75028109 -101946031 + L1M4c LINE L1 865 1655 -4729 * 5238 167 11 13 chrX 75028096 75029323 -101944817 + L1MA3 LINE L1 5127 6305 0 3108 133 52 62 chrX 75029334 75029557 -101944583 + L1MA5 LINE L1 5096 5320 -980 710 158 0 22 chrX 75029557 75029696 -101944444 + L1PB4 LINE L1 6019 6154 -2 3108 133 52 62 chrX 75029696 75030264 -101943876 + L1MA5 LINE L1 5320 5892 -408 1667 262 19 2 chrX 75030262 75030727 -101943413 - L1 LINE L1 -1218 6366 5894 * 13374 191 35 54 chrX 75030750 75030983 -101943157 - L1MA1 LINE L1 0 7721 7485 2289 85 0 26 chrX 75030983 75031290 -101942850 - AluSp SINE Alu -13 300 2 13374 191 35 54 chrX 75031290 75037736 -101936404 - L1MA1 LINE L1 -236 7485 918 250 231 0 0 chrX 75037736 75037788 -101936352 + LTR30 LTR ERV1 1 52 -670 13374 191 35 54 chrX 75037788 75038140 -101936000 - L1MA1 LINE L1 -6803 918 561 346 235 0 0 chrX 75038140 75038221 -101935919 + LTR30 LTR ERV1 544 624 -98 13374 191 35 54 chrX 75038221 75038879 -101935261 - L1MA1 LINE L1 -7160 561 60 3210 256 29 38 chrX 75038885 75040164 -101933976 - L1PA12 LINE L1 -4741 2843 805 2000 282 64 23 chrX 75040164 75041720 -101932420 - L1 LINE L1 -3493 2857 1231 312 231 64 0 chrX 75042099 75042177 -101931963 - L1 LINE L1 -5238 1043 961 * 831 382 26 7 chrX 75042173 75042611 -101931529 - L1 LINE L1 -5752 529 1 208 139 0 0 chrX 75042764 75042800 -101931340 + (TTTAA)n Simple_repeat Simple_repeat 2 37 0 3264 131 14 0 chrX 75043324 75043829 -101930311 - MER75 DNA T2_type -1 513 2 24 67 0 0 chrX 75044085 75044130 -101930010 + AT_rich Low_complexity Low_complexity 1 45 0 508 169 154 7 chrX 75044520 75044656 -101929484 - L1MA5 LINE L1 -6 6294 6139 359 326 35 35 chrX 75045373 75045545 -101928595 - L3 LINE CR1 -382 1195 1024 2205 125 0 21 chrX 75045549 75045877 -101928263 - MER1B DNA MER1_type 0 339 19 404 322 114 12 chrX 75045888 75046143 -101927997 - L3 LINE CR1 -573 1004 724 331 179 0 0 chrX 75046468 75046535 -101927605 + L1MB8 LINE L1 6112 6178 0 25 31 0 0 chrX 75046871 75046903 -101927237 + AT_rich Low_complexity Low_complexity 1 32 0 246 287 29 52 chrX 75047522 75047696 -101926444 + L2 LINE L2 3089 3258 -55 309 279 0 47 chrX 75047705 75047844 -101926296 + MER5B DNA MER1_type 38 167 -22 349 0 0 0 chrX 75048232 75048277 -101925863 - L1PA2 LINE L1 -1 6154 6110 199 365 107 15 chrX 75050250 75050447 -101923693 + L2 LINE L2 2673 2887 -427 4437 204 28 66 chrX 75051036 75052819 -101921321 - L1MB5 LINE L1 -8 7585 5888 1021 190 0 5 chrX 75052835 75053030 -101921110 - L1MB4 LINE L1 -164 6016 5823 2733 237 33 15 chrX 75053069 75053739 -101920401 - L1PA16 LINE L1 -9 6157 5476 893 225 67 46 chrX 75053846 75053961 -101920179 - L1MB5 LINE L1 -2111 5454 5343 1537 83 14 0 chrX 75053961 75054177 -101919963 - L1PA13 LINE L1 -4 6159 5941 893 225 67 46 chrX 75054177 75054345 -101919795 - L1MB5 LINE L1 -2222 5343 5165 2000 154 27 0 chrX 75054345 75054682 -101919458 + MER47A DNA MER2_type 1 346 -20 3393 256 50 37 chrX 75054700 75054940 -101919200 - L1MB5 LINE L1 -2398 5167 4932 1140 126 0 0 chrX 75054940 75055107 -101919033 - L1PA8A LINE L1 -3 6128 5962 3393 256 50 37 chrX 75055107 75055352 -101918788 - L1MB5 LINE L1 -2633 4932 4692 1587 145 8 0 chrX 75055352 75055593 -101918547 - AluSx SINE Alu -69 243 1 3393 256 50 37 chrX 75055593 75056601 -101917539 - L1MB5 LINE L1 -2873 4692 3654 14090 185 74 59 chrX 75056606 75059928 -101914212 - L1MB5 LINE L1 -4172 3393 22 828 195 0 0 chrX 75059940 75060104 -101914036 - L1 LINE L1 -1058 5088 4925 2201 197 43 10 chrX 75060104 75060596 -101913544 + L1MB1 LINE L1 5660 6168 0 222 305 152 12 chrX 75061214 75061378 -101912762 + L2 LINE L2 3127 3313 0 1043 243 96 6 chrX 75061726 75062039 -101912101 + MER58B DNA MER1_type 1 341 0 539 120 11 0 chrX 75062423 75062515 -101911625 - AluSg/x SINE Alu -3 309 217 823 252 30 17 chrX 75062622 75062852 -101911288 - MIR SINE MIR 0 262 30 369 0 0 0 chrX 75064319 75064360 -101909780 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4229 26 0 4 chrX 75064360 75064859 -101909281 - L1PA3 LINE L1 -9 6146 5650 19844 29 2 0 chrX 75064864 75067274 -101906866 + L1P LINE L1 2696 5110 -1036 45 19 0 0 chrX 75067624 75067676 -101906464 + AT_rich Low_complexity Low_complexity 1 52 0 2473 124 10 0 chrX 75067930 75068325 -101905815 - L1MA1 LINE L1 0 6302 5904 180 0 0 0 chrX 75068325 75068345 -101905795 + (TA)n Simple_repeat Simple_repeat 1 20 0 9569 209 25 34 chrX 75068350 75069427 -101904713 - L1P5 LINE L1 -372 7198 6112 450 53 0 0 chrX 75069427 75069484 -101904656 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 9569 209 25 34 chrX 75069484 75073194 -101900946 - L1P5 LINE L1 -1458 6112 2463 207 0 0 0 chrX 75073194 75073217 -101900923 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 98 4 0 chrX 75073219 75073496 -101900644 - AluY SINE Alu -31 280 3 180 0 0 0 chrX 75073505 75073525 -101900615 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1687 191 44 19 chrX 75073536 75073902 -101900238 - THE1C LTR MaLR 0 375 1 8661 148 74 3 chrX 75073902 75074952 -101899188 - THE1C-int LTR MaLR 0 1580 393 254 49 0 24 chrX 75074952 75074993 -101899147 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 8661 148 74 3 chrX 75074993 75075417 -101898723 - THE1C-int LTR MaLR -1187 393 1 1777 165 47 22 chrX 75075419 75075783 -101898357 - THE1C LTR MaLR -2 373 1 6566 220 70 11 chrX 75075783 75077751 -101896389 - L1M1 LINE L1 -5125 2440 15 1487 183 72 33 chrX 75077796 75078157 -101895983 - THE1C LTR MaLR 0 375 1 2241 122 2 92 chrX 75078157 75078583 -101895557 - THE1C-int LTR MaLR 0 1580 1193 * 4068 179 32 3 chrX 75078559 75079315 -101894825 - THE1C-int LTR MaLR -869 782 5 1818 131 39 55 chrX 75079319 75079524 -101894616 - THE1C LTR MaLR 0 375 177 2175 93 3 26 chrX 75079524 75079834 -101894306 - AluSc SINE Alu -6 303 1 1818 131 39 55 chrX 75079834 75080009 -101894131 - THE1C LTR MaLR -198 177 1 5823 155 61 35 chrX 75080009 75081198 -101892942 + Tigger3b DNA MER2_type 10 1230 -1 21 0 0 0 chrX 75081689 75081710 -101892430 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chrX 75082034 75082093 -101892047 + AT_rich Low_complexity Low_complexity 1 59 0 257 250 0 0 chrX 75083484 75083548 -101890592 + (TA)n Simple_repeat Simple_repeat 1 64 0 24 0 0 0 chrX 75083638 75083662 -101890478 + AT_rich Low_complexity Low_complexity 1 24 0 2480 138 33 17 chrX 75084935 75085356 -101888784 - MSTA LTR MaLR 0 428 1 245 325 0 24 chrX 75085757 75085840 -101888300 + MIR SINE MIR 33 113 -95 363 373 59 18 chrX 75086653 75086822 -101887318 + MER5A DNA MER1_type 7 182 -7 7705 22 0 0 chrX 75087324 75088220 -101885920 - L1PA3 LINE L1 -3 6152 5257 6306 25 0 0 chrX 75088220 75088970 -101885170 + L1P LINE L1 4269 5018 -1128 5292 19 0 0 chrX 75088965 75089581 -101884559 - L1PA3 LINE L1 -1415 4731 4116 * 7599 21 6 0 chrX 75089581 75090767 -101883373 + L1PA2 LINE L1 4963 6153 -2 2157 27 0 0 chrX 75090767 75091029 -101883111 + L1P LINE L1 5005 5266 -880 3365 232 26 20 chrX 75091761 75092302 -101881838 - L1M2 LINE L1 -4172 2996 2446 2210 96 26 3 chrX 75092302 75092604 -101881536 - AluSc SINE Alu 0 309 1 3365 232 26 20 chrX 75092604 75092998 -101881142 - L1M2 LINE L1 -4722 2446 2056 656 215 13 40 chrX 75093078 75093288 -101880852 - L1M2 LINE L1 -5004 2094 1875 626 298 6 11 chrX 75093593 75093774 -101880366 - L1M2 LINE L1 -6154 1014 835 203 308 75 68 chrX 75094605 75094738 -101879402 + L2 LINE L2 3179 3312 -1 22 0 0 0 chrX 75095624 75095646 -101878494 + AT_rich Low_complexity Low_complexity 1 22 0 3828 181 72 52 chrX 75096171 75096642 -101877498 - L1MC3 LINE L1 -39 7746 7286 632 186 62 0 chrX 75096642 75096803 -101877337 - L1MA7 LINE L1 -7 6284 6114 3828 181 72 52 chrX 75096803 75097031 -101877109 - L1MC3 LINE L1 -499 7286 7064 2219 93 0 0 chrX 75097031 75097358 -101876782 - AluSx SINE Alu 0 312 1 3828 181 72 52 chrX 75097358 75097578 -101876562 - L1MC3 LINE L1 -721 7064 6808 213 121 0 0 chrX 75097698 75097731 -101876409 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 22 35 0 0 chrX 75098080 75098109 -101876031 + AT_rich Low_complexity Low_complexity 1 29 0 259 210 97 0 chrX 75098620 75098682 -101875458 + MIR SINE MIR 195 262 0 283 331 203 0 chrX 75098713 75098861 -101875279 + L2 LINE L2 2823 3000 -313 695 268 135 40 chrX 75099356 75099681 -101874459 + L2 LINE L2 2954 3309 -4 451 338 48 0 chrX 75104360 75104505 -101869635 + MIR3 SINE MIR 9 160 -48 1424 212 101 48 chrX 75104652 75105086 -101869054 + MLT2B1 LTR ERVL 1 457 -63 248 0 31 0 chrX 75105086 75105118 -101869022 + (TG)n Simple_repeat Simple_repeat 2 34 0 259 82 163 0 chrX 75105750 75105799 -101868341 - MLT2A1 LTR ERVL 0 520 464 291 204 11 65 chrX 75105824 75106010 -101868130 + (TATAA)n Simple_repeat Simple_repeat 2 177 0 274 216 72 6 chrX 75105946 75106113 -101868027 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 261 0 0 0 chrX 75106125 75106154 -101867986 + (TA)n Simple_repeat Simple_repeat 1 29 0 2927 60 21 8 chrX 75106154 75106535 -101867605 - MLT2A1 LTR ERVL -58 386 1 655 215 20 20 chrX 75107139 75107288 -101866852 + Charlie2 DNA MER1_type 2029 2177 -685 1149 237 69 12 chrX 75107315 75107737 -101866403 + Charlie2 DNA MER1_type 2412 2857 -5 272 257 198 0 chrX 75108176 75108277 -101865863 - L2 LINE L2 0 3313 3193 487 191 0 0 chrX 75108888 75108977 -101865163 + L1P LINE L1 3749 3837 -2309 558 186 0 0 chrX 75108978 75109080 -101865060 - MER72 LTR ERV1 -598 124 23 692 326 52 26 chrX 75110108 75110681 -101863459 + L1ME3A LINE L1 5320 5907 -263 317 194 25 13 chrX 75110846 75111010 -101863130 + (TA)n Simple_repeat Simple_repeat 1 166 0 1527 260 33 18 chrX 75111023 75111511 -101862629 + L1MD1 LINE L1 4570 5064 -1082 2942 217 36 9 chrX 75111595 75112079 -101862061 + L1MD1 LINE L1 5082 5597 -762 1984 107 0 67 chrX 75112079 75112406 -101861734 - AluSg SINE Alu -5 305 1 2942 217 36 9 chrX 75112406 75112769 -101861371 + L1MD1 LINE L1 5597 5949 -410 314 150 182 1 chrX 75112766 75112877 -101861263 - L1P LINE L1 -806 5340 5215 * 1810 151 0 11 chrX 75112916 75113201 -101860939 + AluSx SINE Alu 1 282 -30 183 80 0 0 chrX 75113201 75113226 -101860914 + (TC)n Simple_repeat Simple_repeat 2 26 0 351 113 0 0 chrX 75113250 75113303 -101860837 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chrX 75113302 75113322 -101860818 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 782 210 181 8 chrX 75113324 75113562 -101860578 + L1MD1 LINE L1 5964 6242 0 2503 260 88 45 chrX 75114014 75114793 -101859347 + L1ME LINE L1 6 750 -5511 2680 26 0 3 chrX 75114793 75115103 -101859037 + AluY SINE Alu 1 309 -2 2503 260 88 45 chrX 75115103 75115554 -101858586 + L1ME LINE L1 750 1180 -5081 276 100 0 0 chrX 75115554 75115594 -101858546 + (TG)n Simple_repeat Simple_repeat 1 40 0 2503 260 88 45 chrX 75115594 75116346 -101857794 + L1ME LINE L1 1180 2130 -4131 2095 24 12 0 chrX 75116346 75116587 -101857553 - L1P1 LINE L1 -349 5806 5560 1541 52 0 0 chrX 75116587 75116780 -101857360 + L1PA3 LINE L1 5960 6152 -3 21 0 0 0 chrX 75116787 75116808 -101857332 + AT_rich Low_complexity Low_complexity 1 21 0 376 291 77 50 chrX 75116808 75116990 -101857150 - MIR SINE MIR -58 204 18 451 330 84 24 chrX 75117453 75117750 -101856390 + L3 LINE CR1 496 810 -767 222 364 10 0 chrX 75117835 75117934 -101856206 + MIR3 SINE MIR 105 204 -4 231 249 287 39 chrX 75117938 75118119 -101856021 + L3 LINE CR1 947 1172 -405 459 395 29 23 chrX 75118423 75118732 -101855408 + L2 LINE L2 2828 3138 -175 1171 197 38 35 chrX 75119173 75119462 -101854678 - MLT1B LTR MaLR 0 390 101 7673 25 0 0 chrX 75119462 75120540 -101853600 - L1PA3 LINE L1 0 6155 5078 8036 25 1 0 chrX 75120540 75121492 -101852648 + L1PA3 LINE L1 4115 5067 -1079 642 127 8 59 chrX 75121492 75121610 -101852530 - MLT1B LTR MaLR -278 112 1 5109 167 16 16 chrX 75121933 75122598 -101851542 + L1PA16 LINE L1 4980 5643 -523 1747 162 151 16 chrX 75122598 75122975 -101851165 - MSTA LTR MaLR 0 428 1 5109 167 16 16 chrX 75122975 75123497 -101850643 + L1PA16 LINE L1 5643 6164 -2 1322 221 33 52 chrX 75124108 75124474 -101849666 - MLT1A2 LTR MaLR -5 369 11 12772 145 24 64 chrX 75124545 75127057 -101847083 - Tigger1 DNA MER2_type -4 2414 3 23 0 0 0 chrX 75127157 75127180 -101846960 + AT_rich Low_complexity Low_complexity 1 23 0 741 173 0 30 chrX 75127549 75127682 -101846458 + AluSq/x SINE Alu 1 129 -183 343 299 149 23 chrX 75128085 75128259 -101845881 + L2 LINE L2 3116 3311 -2 283 244 167 0 chrX 75128342 75128432 -101845708 + MER20 DNA MER1_type 115 219 0 24 0 0 0 chrX 75128450 75128474 -101845666 + AT_rich Low_complexity Low_complexity 1 24 0 232 36 0 0 chrX 75129236 75129264 -101844876 + (TTTA)n Simple_repeat Simple_repeat 1 152 0 1833 140 11 0 chrX 75129264 75129544 -101844596 - AluSx SINE Alu -1 310 1 32 0 0 0 chrX 75131149 75131181 -101842959 + AT_rich Low_complexity Low_complexity 1 32 0 418 73 0 0 chrX 75131218 75131273 -101842867 + MADE1 DNA Mariner 1 55 -25 348 235 0 0 chrX 75132167 75132248 -101841892 + L1MB8 LINE L1 6070 6150 -28 1932 100 22 0 chrX 75132268 75132537 -101841603 + AluSg SINE Alu 1 275 -35 2199 100 3 34 chrX 75133179 75133499 -101840641 - AluSx SINE Alu -2 310 1 373 316 70 27 chrX 75133550 75133737 -101840403 - MIR SINE MIR -48 214 20 211 195 0 0 chrX 75133889 75133930 -101840210 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 242 0 15 chrX 75135092 75135140 -101839000 + (TG)n Simple_repeat Simple_repeat 2 50 -16 2790 220 21 17 chrX 75135140 75135790 -101838350 - MER82 DNA MER2_type 0 653 1 185 242 0 15 chrX 75135790 75135807 -101838333 + (TG)n Simple_repeat Simple_repeat 50 66 0 831 274 68 0 chrX 75135811 75136103 -101838037 + Charlie7 DNA MER1_type 410 721 -1891 22 35 0 0 chrX 75136736 75136765 -101837375 + AT_rich Low_complexity Low_complexity 1 29 0 233 399 25 6 chrX 75137749 75137907 -101836233 + L2 LINE L2 2598 2758 -556 26 30 0 0 chrX 75140483 75140516 -101833624 + AT_rich Low_complexity Low_complexity 1 33 0 1183 330 20 28 chrX 75140769 75141266 -101832874 + L1M3b LINE L1 1216 1708 -5788 226 348 77 28 chrX 75141285 75141466 -101832674 + L1M3b LINE L1 2045 2234 -5262 2525 61 0 3 chrX 75141671 75141982 -101832158 + AluY SINE Alu 1 310 -1 2316 62 0 65 chrX 75142045 75142367 -101831773 - AluSp SINE Alu -12 301 1 3715 259 27 11 chrX 75142394 75143749 -101830391 + L1M3b LINE L1 3316 4690 -2875 11608 200 37 4 chrX 75143749 75146019 -101828121 + L1M1 LINE L1 16 2360 -5205 968 128 13 0 chrX 75146041 75146197 -101827943 - L1MA1 LINE L1 -3 6299 6142 1016 72 62 0 chrX 75146197 75146375 -101827765 + MER11A LTR ERVK 2 284 -982 304 100 0 0 chrX 75146378 75146418 -101827722 + MER11A LTR ERVK 1225 1264 -2 3630 120 57 2 chrX 75146420 75147018 -101827122 - L1MA1 LINE L1 -154 6148 5518 1121 157 58 14 chrX 75147015 75147238 -101826902 + L1MA7 LINE L1 5629 5861 -430 * 1420 227 59 28 chrX 75147223 75147611 -101826529 + L1MA8 LINE L1 5753 6152 -139 1345 257 83 12 chrX 75147609 75148265 -101825875 - L1M2c LINE L1 -4474 1737 1058 * 10291 201 14 5 chrX 75148289 75151678 -101822462 - L1PB2 LINE L1 -3 6205 2789 3088 140 4 6 chrX 75151681 75152168 -101821972 + LTR15 LTR ERV1 1 486 -7 6670 143 54 12 chrX 75152178 75153986 -101820154 - L1PB2 LINE L1 -3417 2786 902 2159 147 59 43 chrX 75154855 75155276 -101818864 - MSTC LTR MaLR 0 428 1 223 298 81 32 chrX 75157526 75157650 -101816490 + MIR SINE MIR 85 214 -48 196 403 0 0 chrX 75157692 75157764 -101816376 - MIR SINE MIR -114 94 23 2523 40 0 3 chrX 75160842 75161141 -101812999 - AluY SINE Alu -13 298 1 660 182 63 97 chrX 75161288 75161499 -101812641 + LTR37B LTR ERV1 209 411 -57 428 97 42 0 chrX 75161499 75161571 -101812569 - L1MA4A LINE L1 -4 6299 6225 660 182 63 97 chrX 75161571 75161628 -101812512 + LTR37B LTR ERV1 411 468 0 275 190 13 38 chrX 75161659 75161738 -101812402 + (TAA)n Simple_repeat Simple_repeat 2 78 0 791 278 70 13 chrX 75161764 75161994 -101812146 - MIR SINE MIR -16 246 4 243 0 0 0 chrX 75162914 75162941 -101811199 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1777 164 4 0 chrX 75162946 75163226 -101810914 - AluSx SINE Alu -31 281 1 318 132 0 0 chrX 75163795 75163848 -101810292 + (CA)n Simple_repeat Simple_repeat 2 54 0 1125 215 99 47 chrX 75163985 75164371 -101809769 + L1M4 LINE L1 1030 1457 -5189 2301 110 0 0 chrX 75164371 75164679 -101809461 + AluSg SINE Alu 1 308 -2 1125 215 99 47 chrX 75164679 75164825 -101809315 + L1M4 LINE L1 1457 1594 -5052 606 236 40 0 chrX 75164826 75164974 -101809166 + L1M4 LINE L1 1675 1828 -4818 4854 245 32 80 chrX 75164974 75169268 -101804872 + L1PB4 LINE L1 2 6513 -346 282 95 0 0 chrX 75169268 75169310 -101804830 + (CA)n Simple_repeat Simple_repeat 2 43 0 4854 245 32 80 chrX 75169310 75169623 -101804517 + L1PB4 LINE L1 6513 6840 -19 207 0 0 0 chrX 75169632 75169655 -101804485 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 5721 96 9 5 chrX 75169655 75170458 -101803682 - L1PA10 LINE L1 -20 6148 5343 947 107 7 0 chrX 75170457 75170597 -101803543 + L1P LINE L1 4859 4999 -1147 * 2020 144 32 6 chrX 75170597 75170943 -101803197 + THE1A LTR MaLR 1 355 0 11021 100 24 5 chrX 75170943 75172494 -101801646 + THE1A-int LTR MaLR 1 1580 0 892 64 0 0 chrX 75172494 75172603 -101801537 + THE1A LTR MaLR 1 109 -255 1281 193 12 4 chrX 75172814 75173058 -101801082 + THE1A LTR MaLR 110 355 0 249 152 0 22 chrX 75173058 75173104 -101801036 + L1P LINE L1 4995 5039 -1107 * 656 243 133 5 chrX 75173095 75173313 -101800827 + L1MB3 LINE L1 3951 4196 -1950 * 2767 245 19 21 chrX 75173303 75173391 -101800749 + L1MB3 LINE L1 4478 4565 -1581 1529 194 17 10 chrX 75173391 75173679 -101800461 + AluJb SINE Alu 1 290 -22 2767 245 19 21 chrX 75173679 75174394 -101799746 + L1MB3 LINE L1 4565 5279 -867 1637 187 42 6 chrX 75174407 75174766 -101799374 + L1MB3 LINE L1 5803 6174 -9 21 57 0 0 chrX 75175775 75175810 -101798330 + AT_rich Low_complexity Low_complexity 1 35 0 5771 156 28 10 chrX 75175929 75177736 -101796404 - L1PB1 LINE L1 -7 6860 5019 * 7177 187 8 3 chrX 75177732 75180720 -101793420 - L1PB1 LINE L1 -4 6863 3848 * 7873 191 145 13 chrX 75180712 75182751 -101791389 - L1PB1 LINE L1 -4549 2314 6 9700 155 62 19 chrX 75182764 75185823 -101788317 - L1PB1 LINE L1 -1822 5040 2115 1759 184 3 0 chrX 75185823 75186122 -101788018 - AluSx SINE Alu -12 300 1 9700 155 62 19 chrX 75186122 75186187 -101787953 - L1PB1 LINE L1 -4747 2115 2054 207 0 0 0 chrX 75186187 75186210 -101787930 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 9700 155 62 19 chrX 75186210 75187280 -101786860 - L1PB1 LINE L1 -4808 2054 608 990 160 48 0 chrX 75187255 75187443 -101786697 - L1PB1 LINE L1 -6664 199 3 * 23 0 0 0 chrX 75187620 75187643 -101786497 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chrX 75187750 75187786 -101786354 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chrX 75188806 75188827 -101785313 + AT_rich Low_complexity Low_complexity 1 21 0 239 151 151 41 chrX 75189595 75189668 -101784472 - MER5A DNA MER1_type -99 90 10 240 153 0 68 chrX 75190223 75190282 -101783858 - Tigger2 DNA MER2_type -533 2185 2131 309 100 0 0 chrX 75192002 75192052 -101782088 + (TG)n Simple_repeat Simple_repeat 2 51 0 781 184 61 18 chrX 75192110 75192273 -101781867 + AluJb SINE Alu 134 303 -9 1833 207 38 80 chrX 75192322 75192961 -101781179 + LTR9 LTR ERV1 1 612 0 865 9 0 28 chrX 75193309 75193418 -101780722 + L1PA4 LINE L1 6050 6155 0 876 82 8 0 chrX 75195076 75195198 -101778942 - L1PB2 LINE L1 -7 6144 6022 201 147 0 0 chrX 75195368 75195402 -101778738 + (T)n Simple_repeat Simple_repeat 1 34 0 212 169 17 34 chrX 75195913 75195972 -101778168 + A-rich Low_complexity Low_complexity 1 58 0 315 285 45 84 chrX 75196671 75196980 -101777160 + LTR36 LTR ERV1 315 611 0 3371 116 46 97 chrX 75197002 75197702 -101776438 + MER4A LTR ERV1 1 664 0 1249 177 5 5 chrX 75198258 75198478 -101775662 + AluJb SINE Alu 1 220 -92 440 307 29 0 chrX 75199714 75199854 -101774286 - MER5A DNA MER1_type 0 189 46 2362 98 0 0 chrX 75200199 75200506 -101773634 + AluSc SINE Alu 3 309 0 32 0 0 0 chrX 75202286 75202318 -101771822 + AT_rich Low_complexity Low_complexity 1 32 0 422 186 10 44 chrX 75203676 75203792 -101770348 + MLT2B1 LTR ERVL 5 111 -303 320 226 0 0 chrX 75203771 75203833 -101770307 - MLT2B1 LTR ERVL -349 171 110 * 1849 95 0 0 chrX 75204987 75205230 -101768910 + AluSg SINE Alu 1 243 -67 511 168 0 0 chrX 75206156 75206257 -101767883 + L1MA9 LINE L1 6212 6312 0 529 311 70 19 chrX 75207495 75207752 -101766388 + Charlie2 DNA MER1_type 3 272 -2590 2427 209 42 5 chrX 75207798 75208368 -101765772 - L1MB7 LINE L1 -16 6168 5578 634 282 29 8 chrX 75208375 75208620 -101765520 + Charlie2 DNA MER1_type 2612 2861 -1 198 325 104 0 chrX 75209002 75209079 -101765061 + MIR SINE MIR 50 134 -128 268 262 0 12 chrX 75209081 75209165 -101764975 + (TAG)n Simple_repeat Simple_repeat 3 85 0 21 36 0 0 chrX 75209944 75209972 -101764168 + AT_rich Low_complexity Low_complexity 1 28 0 340 87 2 0 chrX 75211011 75211062 -101763078 - Alu SINE Alu -257 45 1 5695 160 75 11 chrX 75211200 75212089 -101762051 - Tigger3b DNA MER2_type -1797 1231 249 333 0 0 0 chrX 75212089 75212126 -101762014 + (TATAG)n Simple_repeat Simple_repeat 3 39 0 5695 160 75 11 chrX 75212126 75212393 -101761747 - Tigger3b DNA MER2_type -2779 249 1 22 35 0 0 chrX 75212654 75212683 -101761457 + AT_rich Low_complexity Low_complexity 1 29 0 1985 142 0 17 chrX 75212692 75212994 -101761146 - AluSx SINE Alu -15 297 1 30 27 0 0 chrX 75213160 75213197 -101760943 + AT_rich Low_complexity Low_complexity 1 37 0 755 262 117 29 chrX 75213439 75213748 -101760392 - L2 LINE L2 0 3313 2978 1829 179 28 105 chrX 75213750 75213952 -101760188 + MSTB LTR MaLR 1 150 -276 7234 45 3 2 chrX 75213952 75215018 -101759122 + L1PA5 LINE L1 5082 6148 -6 1829 179 28 105 chrX 75215018 75215274 -101758866 + MSTB LTR MaLR 150 424 -2 1255 286 206 14 chrX 75215307 75216005 -101758135 - L2 LINE L2 -375 2939 2108 1580 309 129 12 chrX 75216012 75216702 -101757438 - L2 LINE L2 -1946 1368 598 1388 217 70 7 chrX 75217038 75217453 -101756687 - L1MA6 LINE L1 -2615 3531 3091 * 8111 188 32 36 chrX 75217450 75220230 -101753910 + L1MA6 LINE L1 3535 6300 0 204 226 0 19 chrX 75221010 75221063 -101753077 + (CATA)n Simple_repeat Simple_repeat 3 54 0 3048 146 46 86 chrX 75221063 75221846 -101752294 - Tigger3(Golem) DNA MER2_type 0 3029 2278 346 268 134 0 chrX 75221834 75221931 -101752209 - Tigger3(Golem) DNA MER2_type -2918 111 2 * 3640 174 36 23 chrX 75222032 75222732 -101751408 + MER50 LTR ERV1 3 711 -23 230 75 132 38 chrX 75222768 75222821 -101751319 - THE1B LTR MaLR -306 58 1 234 213 0 0 chrX 75222845 75222892 -101751248 - L1MA7 LINE L1 -226 6065 6019 1782 160 53 64 chrX 75223045 75223281 -101750859 - MSTB LTR MaLR 0 426 194 2365 47 17 3 chrX 75223281 75223580 -101750560 - AluY SINE Alu -8 303 1 1782 160 53 64 chrX 75223580 75223718 -101750422 - MSTB LTR MaLR -232 194 56 545 178 55 22 chrX 75223804 75223958 -101750182 + L1MA7 LINE L1 6133 6293 -7 285 51 0 0 chrX 75224102 75224141 -101749999 + (CA)n Simple_repeat Simple_repeat 2 40 0 367 285 81 8 chrX 75224833 75224956 -101749184 + L2 LINE L2 3182 3313 0 339 316 114 48 chrX 75225088 75225316 -101748824 + L1MEd LINE L1 52 294 -5825 250 331 56 6 chrX 75225393 75225553 -101748587 + L1MEd LINE L1 945 1112 -5007 2455 228 41 3 chrX 75225595 75226249 -101747891 + L1M4 LINE L1 4633 5311 -835 778 225 30 36 chrX 75226260 75226554 -101747586 - MLT1A1 LTR MaLR 0 365 1 918 152 30 0 chrX 75226561 75226725 -101747415 - MLT1A1-int LTR MaLR -6 1729 1561 514 111 0 0 chrX 75226725 75226797 -101747343 - AluSg SINE Alu -17 292 221 1080 101 0 7 chrX 75226797 75226945 -101747195 - AluSg SINE Alu -161 149 3 1014 276 30 40 chrX 75226946 75227319 -101746821 - MLT1A1-int LTR MaLR -162 1573 1205 997 196 10 57 chrX 75227334 75227630 -101746510 + L1MB8 LINE L1 5896 6177 -1 1681 149 3 64 chrX 75227671 75228024 -101746116 - AluJb SINE Alu 0 312 1 2125 152 5 11 chrX 75229482 75230270 -101743870 + L1PA13 LINE L1 3813 4675 -1471 3600 72 30 0 chrX 75230270 75230768 -101743372 - LTR10D LTR ERV1 0 513 1 2125 152 5 11 chrX 75230768 75231108 -101743032 + L1PA13 LINE L1 4675 5016 -1130 2009 160 36 35 chrX 75231109 75231657 -101742483 - MLT2A2 LTR ERVL -2 552 1 4119 143 21 1 chrX 75231657 75232642 -101741498 + L1PA13 LINE L1 5011 6155 -8 315 122 0 0 chrX 75232657 75232706 -101741434 - MSTD LTR MaLR -347 49 1 860 267 46 80 chrX 75232706 75233257 -101740883 - MSTD-int LTR MaLR 0 1735 903 1947 149 0 7 chrX 75233415 75233710 -101740430 - AluSx SINE Alu -19 293 1 3447 244 17 48 chrX 75233806 75234640 -101739500 - MSTD-int LTR MaLR -801 934 132 5250 55 40 0 chrX 75234640 75235334 -101738806 + LTR30 LTR ERV1 1 722 0 3447 244 17 48 chrX 75235334 75235462 -101738678 - MSTD-int LTR MaLR -1603 132 2 667 216 0 0 chrX 75235464 75235598 -101738542 - MSTD LTR MaLR 0 396 263 3596 47 2 7 chrX 75235600 75236050 -101738090 + LTR7 LTR ERV1 1 448 -2 19048 84 52 58 chrX 75236052 75239359 -101734781 + HERVH LTR ERV1 1 3290 -4423 3226 109 0 6 chrX 75239349 75239852 -101734288 + HERVH LTR ERV1 3492 3991 -3722 * 4171 132 6 1 chrX 75239851 75240517 -101733623 + HERVH LTR ERV1 4481 5149 -2564 1289 133 18 9 chrX 75240518 75240736 -101733404 + HERVH LTR ERV1 5600 5819 -1894 2342 87 45 13 chrX 75240736 75241114 -101733026 + HERVH LTR ERV1 7324 7713 0 3509 55 0 7 chrX 75241114 75241565 -101732575 + LTR7 LTR ERV1 1 448 -2 778 231 61 40 chrX 75241567 75241814 -101732326 - MSTD LTR MaLR -144 252 1 361 226 34 20 chrX 75241992 75242138 -101732002 + L1M4 LINE L1 3833 3980 -2166 1989 92 68 6 chrX 75242371 75242736 -101731404 + LTR7 LTR ERV1 1 448 -2 2445 55 0 0 chrX 75242879 75243187 -101730953 + L1PA5 LINE L1 5847 6154 0 1922 128 83 0 chrX 75243228 75243516 -101730624 + AluSx SINE Alu 1 312 0 525 176 20 29 chrX 75243605 75243707 -101730433 + MER58B DNA MER1_type 241 341 0 3950 213 9 15 chrX 75243826 75244252 -101729888 - L1 LINE L1 -1233 4913 4486 2413 62 0 37 chrX 75244252 75244574 -101729566 - AluY SINE Alu -1 310 1 3950 213 9 15 chrX 75244574 75245126 -101729014 - L1 LINE L1 -1660 4486 3941 350 132 0 0 chrX 75245122 75245175 -101728965 + L1PA16 LINE L1 4911 4963 -1183 * 1320 186 128 15 chrX 75245177 75245569 -101728571 + LTR7 LTR ERV1 1 436 -14 4994 127 68 9 chrX 75245627 75246763 -101727377 + L1PA16 LINE L1 4970 6157 -9 264 321 0 0 chrX 75247473 75247554 -101726586 - Charlie8 DNA MER1_type -1 2416 2336 284 175 143 0 chrX 75247732 75247795 -101726345 + Tigger5 DNA MER2_type 8 79 -2244 1060 103 0 0 chrX 75247977 75248113 -101726027 + AluSg/x SINE Alu 158 293 -19 24 85 0 0 chrX 75248311 75248370 -101725770 + AT_rich Low_complexity Low_complexity 1 59 0 1518 202 18 64 chrX 75248521 75248972 -101725168 - MSTB1 LTR MaLR -2 430 1 626 230 17 17 chrX 75249696 75249870 -101724270 - MLT1F LTR MaLR -18 524 351 496 301 39 39 chrX 75250177 75250364 -101723776 + MIR SINE MIR 34 223 -39 248 38 19 57 chrX 75250364 75250417 -101723723 + (TA)n Simple_repeat Simple_repeat 1 51 0 496 301 39 39 chrX 75250417 75250458 -101723682 + MIR SINE MIR 222 262 0 370 279 16 47 chrX 75250561 75250690 -101723450 + MIR SINE MIR 48 172 -90 306 0 0 0 chrX 75250864 75250898 -101723242 + (CA)n Simple_repeat Simple_repeat 2 35 0 194 254 15 30 chrX 75251432 75251499 -101722641 + MER5A DNA MER1_type 124 189 0 279 0 0 0 chrX 75251692 75251723 -101722417 + (CA)n Simple_repeat Simple_repeat 2 32 0 1081 235 11 64 chrX 75251774 75251967 -101722173 - MER58B DNA MER1_type -2082 338 171 1942 157 3 0 chrX 75251967 75252260 -101721880 - AluSx SINE Alu -18 294 1 1081 235 11 64 chrX 75252260 75252423 -101721717 - MER58B DNA MER1_type -2249 171 1 386 363 102 0 chrX 75252459 75252685 -101721455 + MIR SINE MIR 14 262 0 * 620 335 36 13 chrX 75252680 75252904 -101721236 - MIR SINE MIR -26 236 8 1733 186 3 0 chrX 75252980 75253265 -101720875 - AluJo SINE Alu -15 297 12 1338 193 75 3 chrX 75253369 75253674 -101720466 + MLT2C1 LTR ERVL 1 327 -70 408 120 27 0 chrX 75253688 75253763 -101720377 - L1MA2 LINE L1 0 6304 6228 877 224 40 5 chrX 75253915 75254116 -101720024 + MER20 DNA MER1_type 7 214 -5 1193 104 5 10 chrX 75254501 75254694 -101719446 - L1MA2 LINE L1 0 6304 6113 436 312 258 15 chrX 75255060 75255467 -101718673 - L2 LINE L2 -4 3309 2804 4221 210 48 6 chrX 75256182 75257045 -101717095 + MER54A LTR ERVL 3 901 0 189 0 0 0 chrX 75257177 75257198 -101716942 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 240 33 0 0 chrX 75258115 75258145 -101715995 + LTR6A LTR ERV1 73 102 -462 27 29 0 0 chrX 75258980 75259014 -101715126 + AT_rich Low_complexity Low_complexity 1 34 0 811 286 5 0 chrX 75259546 75259749 -101714391 - L1M2 LINE L1 -5511 1338 1135 2757 214 28 2 chrX 75259915 75260447 -101713693 + L1M2 LINE L1 3 548 -6301 2015 275 51 20 chrX 75261106 75261710 -101712430 - L1M2 LINE L1 -5713 1136 514 * 9095 216 46 26 chrX 75261707 75261766 -101712374 + L1M2 LINE L1 2770 2826 -4022 2534 130 3 0 chrX 75261766 75262136 -101712004 - THE1C LTR MaLR 0 375 5 9176 129 35 63 chrX 75262140 75263763 -101710377 - THE1C-int LTR MaLR 0 1580 4 9095 216 46 26 chrX 75263763 75263784 -101710356 + L1M2 LINE L1 2828 2847 -4001 2472 101 8 41 chrX 75263784 75264172 -101709968 - THE1C LTR MaLR 0 375 1 9095 216 46 26 chrX 75264172 75264695 -101709445 + L1M2 LINE L1 2847 3358 -3490 1599 168 8 8 chrX 75264695 75264995 -101709145 - AluSx SINE Alu 0 326 27 9095 216 46 26 chrX 75264995 75267177 -101706963 + L1M2 LINE L1 3358 5621 -1227 235 143 0 0 chrX 75267191 75267233 -101706907 + L1MA4A LINE L1 6166 6207 -96 1359 222 95 10 chrX 75267422 75267508 -101706632 - MER114 LTR ERV 0 648 571 2329 184 19 0 chrX 75267508 75267926 -101706214 + MSTB LTR MaLR 1 426 0 1359 222 95 10 chrX 75267926 75268420 -101705720 - MER114 LTR ERV -77 571 19 1938 166 54 5 chrX 75268906 75269274 -101704866 - L1MA6 LINE L1 -5 6295 5910 371 174 43 0 chrX 75269276 75269345 -101704795 + L1MA6 LINE L1 5852 5923 -377 29 0 0 0 chrX 75269422 75269451 -101704689 + AT_rich Low_complexity Low_complexity 1 29 0 246 290 159 35 chrX 75269519 75269664 -101704476 + MER5A DNA MER1_type 21 183 -6 260 167 107 0 chrX 75269842 75269926 -101704214 - L1ME4a LINE L1 -2 6119 6027 763 275 88 8 chrX 75270129 75270369 -101703771 + MIR SINE MIR 4 262 0 22 70 0 0 chrX 75270473 75270516 -101703624 + AT_rich Low_complexity Low_complexity 1 43 0 908 233 10 0 chrX 75270535 75270741 -101703399 - MER92B LTR ERV1 -428 208 1 447 19 0 0 chrX 75270850 75270902 -101703238 + (TC)n Simple_repeat Simple_repeat 2 53 0 * 876 89 0 0 chrX 75270901 75271024 -101703116 + (TA)n Simple_repeat Simple_repeat 2 124 0 239 242 0 0 chrX 75271129 75271195 -101702945 + T-rich Low_complexity Low_complexity 1 66 0 345 284 0 34 chrX 75271255 75271403 -101702737 - HAL1 LINE L1 -83 2424 2282 1086 123 0 0 chrX 75271422 75271592 -101702548 - L1MA2 LINE L1 0 6304 6135 386 290 133 82 chrX 75271599 75272065 -101702075 - HAL1 LINE L1 -218 2289 1800 358 206 174 11 chrX 75273405 75273497 -101700643 - L2 LINE L2 -2 3311 3205 202 282 90 26 chrX 75273492 75273570 -101700570 + MIR SINE MIR 10 92 -170 * 892 246 41 16 chrX 75275594 75276160 -101697980 - L1ME2 LINE L1 -13 6151 5449 1984 283 55 27 chrX 75276294 75276998 -101697142 - L1PA13 LINE L1 -6063 724 1 870 133 13 13 chrX 75277771 75277929 -101696211 - MER61A LTR ERV1 0 343 186 22646 87 43 23 chrX 75277932 75281655 -101692485 - MER61A-int LTR ERV1 0 5217 1320 3319 177 27 30 chrX 75281694 75282396 -101691744 - MER61A-int LTR ERV1 -4517 700 1 1995 118 17 59 chrX 75282396 75282752 -101691388 - MER61A LTR ERV1 0 343 3 1972 188 60 15 chrX 75283257 75283655 -101690485 - MSTB1 LTR MaLR -16 416 1 273 210 0 0 chrX 75283667 75283729 -101690411 + (TA)n Simple_repeat Simple_repeat 1 62 0 316 197 14 28 chrX 75283729 75283800 -101690340 - L1MCa LINE L1 -4362 2064 1995 1076 77 32 0 chrX 75286529 75286684 -101687456 - L1MA1 LINE L1 0 6302 6143 302 363 140 16 chrX 75286764 75287257 -101686883 - L2 LINE L2 -565 2749 2196 3903 115 20 2 chrX 75287264 75287853 -101686287 + L1PA13 LINE L1 5564 6163 0 214 360 18 26 chrX 75288730 75288844 -101685296 - MIR SINE MIR -49 159 47 23 54 0 0 chrX 75289189 75289226 -101684914 + AT_rich Low_complexity Low_complexity 1 37 0 1136 238 78 10 chrX 75289863 75290258 -101683882 - LTR37A LTR ERV1 0 426 5 336 321 52 52 chrX 75290700 75290968 -101683172 + LTR40a LTR ERVL 168 435 -84 333 82 0 0 chrX 75290984 75291033 -101683107 + (TG)n Simple_repeat Simple_repeat 1 49 0 836 261 11 62 chrX 75291704 75291946 -101682194 - MIR SINE MIR -1 261 8 2207 112 0 13 chrX 75291946 75292249 -101681891 + AluSx SINE Alu 1 299 -13 375 23 0 0 chrX 75292249 75292293 -101681847 + (TA)n Simple_repeat Simple_repeat 2 45 0 836 261 11 62 chrX 75292293 75292321 -101681819 - MIR SINE MIR -252 10 4 1442 229 91 15 chrX 75292468 75292866 -101681274 + MSTC LTR MaLR 1 428 0 1665 114 0 4 chrX 75293109 75293346 -101680794 - AluSq SINE Alu -77 236 1 826 279 96 8 chrX 75293841 75294217 -101679923 + L1ME4a LINE L1 5518 5926 -195 30 0 0 0 chrX 75295081 75295111 -101679029 + AT_rich Low_complexity Low_complexity 1 30 0 1767 130 62 0 chrX 75295120 75295396 -101678744 - AluSx SINE Alu -19 293 1 2074 93 0 62 chrX 75295987 75296308 -101677832 + AluSg SINE Alu 1 301 -9 716 196 60 15 chrX 75296630 75296891 -101677249 - MLT1A1 LTR MaLR 0 374 5 24 0 0 0 chrX 75297044 75297068 -101677072 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chrX 75297253 75297278 -101676862 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chrX 75297403 75297438 -101676702 + AT_rich Low_complexity Low_complexity 1 35 0 1091 94 0 0 chrX 75299068 75299217 -101674923 + L1MA2 LINE L1 6155 6303 -1 592 267 87 26 chrX 75299302 75299497 -101674643 + MIR SINE MIR 26 232 -30 928 210 13 76 chrX 75299506 75299730 -101674410 + MER63A DNA MER1_type 1 210 0 25 0 0 0 chrX 75300107 75300132 -101674008 + AT_rich Low_complexity Low_complexity 1 25 0 194 354 0 0 chrX 75300896 75300961 -101673179 - MER5A DNA MER1_type -50 139 75 655 221 175 0 chrX 75301077 75301231 -101672909 + MER5A DNA MER1_type 9 189 0 2157 119 0 3 chrX 75301398 75301700 -101672440 - AluSq SINE Alu -12 301 1 221 290 19 84 chrX 75303090 75303197 -101670943 - L2 LINE L2 -18 3254 3155 297 0 0 0 chrX 75303837 75303870 -101670270 + (CA)n Simple_repeat Simple_repeat 2 34 0 3789 270 87 34 chrX 75304485 75306909 -101667231 + L1M3c LINE L1 12 2227 -3984 434 191 148 9 chrX 75306909 75307024 -101667116 - L1M2 LINE L1 -804 5487 5357 396 209 34 7 chrX 75307024 75307172 -101666968 + L1M3c LINE L1 3147 3298 -2912 386 313 78 52 chrX 75307196 75307656 -101666484 - MER51A-int LTR ERV1 -399 6130 5659 256 247 25 25 chrX 75308133 75308214 -101665926 - MER51A-int LTR ERV1 -1654 6745 6665 357 143 0 0 chrX 75308395 75308451 -101665689 - MER51A-int LTR ERV1 -274 7542 7487 1287 177 0 40 chrX 75308703 75308951 -101665189 - MER51A-int LTR ERV1 -6925 891 654 2129 182 44 83 chrX 75309298 75309842 -101664298 - MER51A-int LTR ERV1 -7293 523 1 2006 168 33 43 chrX 75309842 75310361 -101663779 - MER51A LTR ERV1 0 634 100 234 222 69 42 chrX 75310362 75310434 -101663706 + MLT1J LTR MaLR 393 466 -45 23 0 0 0 chrX 75310833 75310856 -101663284 + AT_rich Low_complexity Low_complexity 1 23 0 991 246 3 7 chrX 75310856 75311127 -101663013 - L1PA16 LINE L1 0 6163 5923 35 0 0 0 chrX 75311135 75311170 -101662970 + AT_rich Low_complexity Low_complexity 1 35 0 1331 145 4 0 chrX 75311178 75311405 -101662735 - L1PA13 LINE L1 -6 6808 6581 1414 173 19 4 chrX 75311407 75311678 -101662462 + L1P LINE L1 5122 5396 -750 * 6891 245 83 35 chrX 75311671 75313592 -101660548 - L1PA13 LINE L1 -229 6588 4760 186 43 0 0 chrX 75313592 75313615 -101660525 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6891 245 83 35 chrX 75313615 75316040 -101658100 - L1PA13 LINE L1 -2057 4760 2016 2155 121 0 3 chrX 75316040 75316346 -101657794 - AluSx SINE Alu -7 305 1 6891 245 83 35 chrX 75316346 75316481 -101657659 - L1PA13 LINE L1 -4801 2016 1889 1209 170 152 114 chrX 75316495 75316720 -101657420 - MSTA LTR MaLR -18 410 162 1769 152 0 44 chrX 75316720 75316854 -101657286 + AluSx SINE Alu 3 141 -171 2252 91 0 20 chrX 75316854 75317151 -101656989 + AluY SINE Alu 1 291 -20 1769 152 0 44 chrX 75317151 75317313 -101656827 + AluSx SINE Alu 141 286 -26 1209 170 152 114 chrX 75317313 75317482 -101656658 - MSTA LTR MaLR -266 162 1 9011 139 16 53 chrX 75317482 75318572 -101655568 - MSTA-int LTR MaLR 0 1580 568 6821 73 8 0 chrX 75318572 75319591 -101654549 - L1PA8 LINE L1 0 6172 5141 9011 139 16 53 chrX 75319591 75320136 -101654004 - MSTA-int LTR MaLR -1012 568 5 1545 190 14 4 chrX 75320136 75320562 -101653578 - AluSx SINE Alu 0 429 1 1573 182 164 16 chrX 75320577 75320950 -101653190 - MSTA LTR MaLR 0 428 1 1527 226 22 0 chrX 75320956 75321319 -101652821 - L1PA13 LINE L1 -4923 1864 1494 * 1584 319 14 27 chrX 75321289 75321841 -101652299 - L1PA13 LINE L1 -6242 545 1 24 32 0 0 chrX 75321898 75321929 -101652211 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 75322266 75322289 -101651851 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 75322981 75323009 -101651131 + AT_rich Low_complexity Low_complexity 1 28 0 1795 154 15 81 chrX 75324315 75324710 -101649430 + THE1C LTR MaLR 5 373 -2 26 0 0 0 chrX 75325299 75325325 -101648815 + AT_rich Low_complexity Low_complexity 1 26 0 1155 162 30 4 chrX 75325926 75326161 -101647979 - L1MA9 LINE L1 0 6312 6072 2194 180 28 49 chrX 75326458 75326964 -101647176 - L1MA9 LINE L1 -196 6116 5622 297 184 0 0 chrX 75328299 75328348 -101645792 + L1MCa LINE L1 20 68 -6358 2168 92 0 54 chrX 75328477 75328611 -101645529 + AluSx SINE Alu 3 143 -169 2174 110 0 7 chrX 75328611 75328912 -101645228 + AluSg1 SINE Alu 1 299 -10 333 0 0 0 chrX 75328913 75328950 -101645190 + (CA)n Simple_repeat Simple_repeat 2 38 0 2168 92 0 54 chrX 75328950 75329130 -101645010 + AluSx SINE Alu 142 302 -10 1943 131 7 10 chrX 75329435 75329733 -101644407 - AluSq SINE Alu -16 297 1 270 226 117 22 chrX 75331091 75331228 -101642912 + L2 LINE L2 3016 3165 -148 2174 136 0 0 chrX 75331337 75331647 -101642493 - AluSx SINE Alu -2 310 1 464 246 88 20 chrX 75331783 75331960 -101642180 + MLT1J2 LTR MaLR 1 187 -222 31019 118 11 60 chrX 75332032 75337972 -101636168 + L1P3 LINE L1 2 5958 -511 1703 284 43 26 chrX 75338089 75338278 -101635862 + L1MCa LINE L1 273 457 -6150 2092 191 38 12 chrX 75338278 75338696 -101635444 - MSTB1 LTR MaLR -3 429 1 1703 284 43 26 chrX 75338696 75339116 -101635024 + L1MCa LINE L1 457 892 -5715 294 233 0 11 chrX 75339240 75339330 -101634810 - LTR37A LTR ERV1 -29 397 309 1877 218 46 5 chrX 75339491 75339903 -101634237 - MSTB1 LTR MaLR 0 432 4 23 0 0 0 chrX 75340108 75340131 -101634009 + AT_rich Low_complexity Low_complexity 1 23 0 1933 162 42 25 chrX 75340212 75340570 -101633570 - THE1B LTR MaLR 0 364 1 21 36 0 0 chrX 75340727 75340755 -101633385 + AT_rich Low_complexity Low_complexity 1 28 0 190 279 25 38 chrX 75340826 75340905 -101633235 - L2 LINE L2 -4 3309 3232 2180 153 37 8 chrX 75341201 75341555 -101632585 - THE1B LTR MaLR 0 364 1 9172 167 35 9 chrX 75341555 75343095 -101631045 - THE1B-int LTR MaLR 0 1580 1 2314 150 17 8 chrX 75343095 75343456 -101630684 - THE1B LTR MaLR 0 364 1 1020 123 13 0 chrX 75344493 75344647 -101629493 + L1P5 LINE L1 5499 5654 -497 2462 116 8 0 chrX 75345292 75345664 -101628476 - L1PB1 LINE L1 -1 6150 5776 551 53 53 41 chrX 75345676 75345847 -101628293 + (TA)n Simple_repeat Simple_repeat 2 174 0 650 26 22 74 chrX 75345873 75346105 -101628035 + (TA)n Simple_repeat Simple_repeat 1 219 0 2718 86 15 13 chrX 75346111 75346506 -101627634 - L1PB1 LINE L1 -360 5791 5396 11289 217 18 7 chrX 75346507 75349236 -101624904 - L1PB1 LINE L1 -801 5345 2588 9775 130 34 6 chrX 75349237 75351157 -101622983 + L1PB1 LINE L1 1297 3271 -3591 476 256 122 29 chrX 75351338 75351510 -101622630 + MLT1J LTR MaLR 5 192 -319 26 30 0 0 chrX 75353277 75353310 -101620830 + AT_rich Low_complexity Low_complexity 1 33 0 891 245 38 71 chrX 75353310 75353678 -101620462 - L1MA9 LINE L1 -38 6274 5919 * 2570 191 27 136 chrX 75353652 75354006 -101620134 - L1MA9 LINE L1 -748 5398 5007 1508 213 0 21 chrX 75354006 75354293 -101619847 + AluJo SINE Alu 13 293 -19 2570 191 27 136 chrX 75354293 75355009 -101619131 - L1MA9 LINE L1 -1139 5007 4445 205 263 171 0 chrX 75355789 75355865 -101618275 - L2 LINE L2 -43 3229 3141 378 42 0 0 chrX 75356017 75356065 -101618075 + (TG)n Simple_repeat Simple_repeat 1 48 0 715 267 62 18 chrX 75356695 75356968 -101617172 + MER46C DNA MER2_type 18 302 -36 319 331 82 74 chrX 75357077 75357346 -101616794 + L2 LINE L2 2986 3256 -16 351 317 0 20 chrX 75357914 75358015 -101616125 + MER5A DNA MER1_type 16 114 -75 1915 239 118 37 chrX 75358056 75358625 -101615515 - MLT1E3 LTR MaLR 0 624 10 241 307 115 23 chrX 75358697 75358915 -101615225 - L1MC4a LINE L1 -1735 6073 5836 656 290 70 65 chrX 75358935 75359304 -101614836 + L2 LINE L2 2935 3305 -8 456 260 151 0 chrX 75359308 75359527 -101614613 - L1MC4a LINE L1 -320 5801 5550 309 284 41 59 chrX 75359606 75359775 -101614365 - L1MC4a LINE L1 -2378 5430 5265 1282 254 35 9 chrX 75359847 75360186 -101613954 - MER4D LTR ERV1 -7 896 549 374 254 71 31 chrX 75360188 75360353 -101613787 - MER4E LTR ERV1 -590 282 1 22 0 0 0 chrX 75360380 75360402 -101613738 + AT_rich Low_complexity Low_complexity 1 22 0 376 300 30 57 chrX 75360729 75360992 -101613148 - L1MC4a LINE L1 -852 5294 5039 4499 119 61 55 chrX 75361739 75362556 -101611584 - LTR12 LTR ERV1 0 826 5 2009 172 86 52 chrX 75362572 75363154 -101610986 - pTR5 LTR ERV1 -1094 1344 743 239 387 113 7 chrX 75364154 75364296 -101609844 + L2 LINE L2 3103 3259 -13 2342 68 0 3 chrX 75364748 75365043 -101609097 + AluY SINE Alu 1 294 -17 641 320 78 12 chrX 75365582 75365826 -101608314 + MIR SINE MIR 2 261 -1 506 298 43 6 chrX 75367003 75367164 -101606976 - MIR3 SINE MIR -3 205 39 1534 121 4 17 chrX 75368003 75368235 -101605905 + AluSx SINE Alu 1 229 -83 408 278 85 67 chrX 75368792 75369062 -101605078 - L1ME4a LINE L1 -103 6018 5744 1415 191 45 42 chrX 75369118 75369427 -101604713 - AluJo SINE Alu -2 310 1 274 235 25 31 chrX 75370340 75370502 -101603638 + (TA)n Simple_repeat Simple_repeat 2 162 0 23 0 0 0 chrX 75370546 75370569 -101603571 + AT_rich Low_complexity Low_complexity 1 23 0 2485 62 3 0 chrX 75371029 75371333 -101602807 - AluSp SINE Alu -8 305 1 668 221 40 0 chrX 75371498 75371647 -101602493 + Tigger3(Golem) DNA MER2_type 128 282 -2747 1079 228 13 0 chrX 75371648 75371876 -101602264 + MER20B DNA MER1_type 381 611 -172 587 289 0 6 chrX 75371885 75372058 -101602082 + L1 LINE L1 3491 3662 -2484 2021 179 11 6 chrX 75372090 75372453 -101601687 - MLT1A1 LTR MaLR 0 365 1 378 0 0 0 chrX 75373395 75373437 -101600703 + (CA)n Simple_repeat Simple_repeat 2 43 0 953 216 33 111 chrX 75374479 75374671 -101599469 - L1M4c LINE L1 -3827 2555 2349 2189 112 0 16 chrX 75374671 75374974 -101599166 + AluSx SINE Alu 1 298 -14 953 216 33 111 chrX 75374974 75375313 -101598827 - L1M4c LINE L1 -4033 2349 2071 42895 30 24 1 chrX 75375328 75381340 -101592800 + L1HS LINE L1 1 6151 -4 321 207 47 27 chrX 75381381 75381550 -101592590 - L1M4c LINE L1 -4326 2058 1792 1887 145 15 6 chrX 75381552 75381883 -101592257 - L1MA4A LINE L1 -33 6972 6639 6158 30 3 0 chrX 75381895 75382617 -101591523 - L1PA4 LINE L1 -3 6152 5429 6823 32 0 0 chrX 75382617 75383517 -101590623 + L1P2 LINE L1 4577 5476 -678 * 12375 219 32 14 chrX 75383513 75383870 -101590270 - L1MA4A LINE L1 -356 6649 6300 1883 158 0 16 chrX 75383870 75384186 -101589954 - AluSx SINE Alu -1 311 1 12375 219 32 14 chrX 75384186 75389750 -101584390 - L1MA4A LINE L1 -705 6300 607 2321 243 50 7 chrX 75389820 75390498 -101583642 - L1M4c LINE L1 -4638 1746 1040 1220 222 0 22 chrX 75390498 75390773 -101583367 - AluJo SINE Alu -2 310 42 528 233 87 81 chrX 75390773 75391256 -101582884 - L1M4c LINE L1 -5233 1047 540 2185 96 20 7 chrX 75391946 75392248 -101581892 - AluSq SINE Alu -7 306 1 21 0 0 0 chrX 75392528 75392549 -101581591 + AT_rich Low_complexity Low_complexity 1 21 0 181 309 15 0 chrX 75392893 75392961 -101581179 - MIR SINE MIR -109 153 85 339 25 0 0 chrX 75393089 75393129 -101581011 + (CA)n Simple_repeat Simple_repeat 2 41 0 482 219 96 22 chrX 75393590 75393768 -101580372 + L1MC5 LINE L1 7341 7531 -430 1046 122 18 6 chrX 75393880 75394044 -101580096 + MER46B DNA MER2_type 1 41 -195 13290 184 53 7 chrX 75394045 75399095 -101575045 - L1PBa LINE L1 -1292 5570 290 238 159 23 0 chrX 75399095 75399139 -101575001 - L1PBa LINE L1 -6818 45 1 2625 39 0 0 chrX 75399626 75399934 -101574206 + AluY SINE Alu 1 308 -3 21 0 0 0 chrX 75400663 75400684 -101573456 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chrX 75400760 75400800 -101573340 + AT_rich Low_complexity Low_complexity 1 40 0 606 119 0 0 chrX 75401862 75401946 -101572194 + AluSg SINE Alu 32 115 -195 296 331 23 39 chrX 75402057 75402187 -101571953 + MIR3 SINE MIR 76 203 -5 211 344 17 61 chrX 75402575 75402755 -101571385 - L2 LINE L2 -487 2827 2656 21 71 0 0 chrX 75402848 75402890 -101571250 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chrX 75403252 75403275 -101570865 + AT_rich Low_complexity Low_complexity 1 23 0 223 365 130 0 chrX 75403616 75403731 -101570409 - L2 LINE L2 0 3272 3143 284 277 34 95 chrX 75403877 75404025 -101570115 - MLT1I LTR MaLR -39 370 232 480 389 27 19 chrX 75404281 75404581 -101569559 - L2 LINE L2 -237 3076 2776 1072 316 78 17 chrX 75404873 75405348 -101568792 - MLT1H LTR MaLR -2 547 44 240 337 45 56 chrX 75405463 75405641 -101568499 - L2 LINE L2 -1004 2310 2135 280 305 12 0 chrX 75405775 75405857 -101568283 + L1ME LINE L1 3 85 -5985 14296 236 40 21 chrX 75406481 75409291 -101564849 - L1PA12 LINE L1 -888 6696 3941 186 43 0 0 chrX 75409291 75409314 -101564826 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 14296 236 40 21 chrX 75409314 75410889 -101563251 - L1PA12 LINE L1 -3643 3941 2398 4407 139 0 13 chrX 75410889 75411589 -101562551 - LTR8 LTR ERV1 0 691 1 14296 236 40 21 chrX 75411589 75412609 -101561531 - L1PA12 LINE L1 -5186 2398 25 2225 102 7 0 chrX 75412756 75413050 -101561090 - AluSx SINE Alu -16 296 1 203 340 158 30 chrX 75413122 75413451 -101560689 + L2 LINE L2 1314 1684 -1630 315 324 83 58 chrX 75413631 75413958 -101560182 + L2 LINE L2 2004 2338 -976 293 408 35 13 chrX 75414208 75414436 -101559704 + L2 LINE L2 2569 2801 -513 1117 317 54 5 chrX 75414535 75414904 -101559236 - MLT1I LTR MaLR -2 407 21 686 197 0 0 chrX 75415035 75415167 -101558973 - FLAM_C SINE Alu -1 132 1 207 280 262 9 chrX 75415307 75415414 -101558726 + L2 LINE L2 3180 3313 0 3351 161 9 3 chrX 75415761 75416333 -101557807 - L1PA16 LINE L1 -9 6157 5583 2122 178 18 13 chrX 75416502 75416896 -101557244 + MSTB1 LTR MaLR 5 400 -32 5526 161 86 3 chrX 75416904 75418698 -101555442 - L1PA13 LINE L1 -8 6806 4852 * 10561 224 51 15 chrX 75418695 75422566 -101551574 - L1PA13 LINE L1 -2783 4014 1 285 128 0 0 chrX 75423725 75423772 -101550368 + (CA)n Simple_repeat Simple_repeat 1 47 0 3080 143 6 21 chrX 75424341 75424874 -101549266 + MER4E LTR ERV1 1 525 -241 751 90 0 0 chrX 75424877 75424977 -101549163 + MER4E LTR ERV1 662 761 -5 270 56 0 0 chrX 75425291 75425327 -101548813 + (T)n Simple_repeat Simple_repeat 1 36 0 5624 109 23 9 chrX 75425346 75426035 -101548105 - L1PA12 LINE L1 0 6168 5490 189 0 0 0 chrX 75426035 75426056 -101548084 + (TTG)n Simple_repeat Simple_repeat 1 21 0 5624 109 23 9 chrX 75426056 75427272 -101546868 - L1PA12 LINE L1 -678 5490 4251 295 258 40 8 chrX 75427541 75427665 -101546475 + (TA)n Simple_repeat Simple_repeat 1 128 0 277 160 0 0 chrX 75428426 75428476 -101545664 - L1MA9 LINE L1 0 6312 6263 5996 92 23 0 chrX 75429258 75430351 -101543789 - L1PA10 LINE L1 -4 6164 5046 2193 131 8 58 chrX 75430430 75430811 -101543329 - THE1B LTR MaLR -1 363 2 332 77 19 0 chrX 75431229 75431281 -101542859 + (TA)n Simple_repeat Simple_repeat 1 53 0 6383 131 73 20 chrX 75431281 75432450 -101541690 + Tigger3b DNA MER2_type 1 1230 -1 815 295 26 0 chrX 75432925 75433152 -101540988 + MIR SINE MIR 30 262 0 748 144 37 112 chrX 75433290 75433478 -101540662 + LTR39 LTR ERV1 1 174 -609 2729 134 13 26 chrX 75433482 75433739 -101540401 - MER4B LTR ERV1 -147 463 213 327 25 0 0 chrX 75433739 75433779 -101540361 + (TTG)n Simple_repeat Simple_repeat 2 41 0 2729 134 13 26 chrX 75433779 75433990 -101540150 - MER4B LTR ERV1 -397 213 1 590 114 0 0 chrX 75434103 75434189 -101539951 + MER57A LTR ERV1 1 86 -317 617 117 0 48 chrX 75434189 75434292 -101539848 + MER4A LTR ERV1 1 98 -566 1670 141 159 73 chrX 75434292 75434662 -101539478 + MER4A LTR ERV1 263 664 0 1724 175 22 0 chrX 75434662 75434976 -101539164 + MER57A LTR ERV1 83 403 0 3169 167 6 9 chrX 75434977 75435503 -101538637 + MER57A-int LTR ERV1 2 525 -7012 694 202 8 113 chrX 75435523 75435787 -101538353 - LTR12 LTR ERV1 -262 452 182 1560 178 10 23 chrX 75436080 75436389 -101537751 + MER57A-int LTR ERV1 527 831 -6706 370 161 0 0 chrX 75436649 75436711 -101537429 + MER34C LTR ERV1 155 216 -369 347 225 50 15 chrX 75436899 75437009 -101537131 + MER57A-int LTR ERV1 1052 1947 -3851 292 247 0 11 chrX 75437301 75437390 -101536750 + MER57A-int LTR ERV1 3354 3441 -2890 363 257 53 48 chrX 75437491 75437697 -101536443 + MER57A-int LTR ERV1 1707 1913 -3023 26 0 0 0 chrX 75437720 75437746 -101536394 + AT_rich Low_complexity Low_complexity 1 26 0 3144 133 10 8 chrX 75438018 75438514 -101535626 + MER57A-int LTR ERV1 5104 5600 -1937 390 274 0 0 chrX 75438515 75438639 -101535501 + (TA)n Simple_repeat Simple_repeat 2 125 0 227 167 42 0 chrX 75438639 75438687 -101535453 - L1MC4 LINE L1 -1339 6703 6654 9789 133 19 5 chrX 75438725 75440232 -101533908 + MER57A-int LTR ERV1 5620 7146 -391 668 139 31 31 chrX 75440232 75440361 -101533779 + LTR54B LTR ERV1 3 131 -367 1707 111 16 4 chrX 75440362 75440615 -101533525 + MER57A-int LTR ERV1 7280 7535 -2 2230 169 13 2 chrX 75440616 75441013 -101533127 + MER57A LTR ERV1 1 401 -2 341 329 68 92 chrX 75442166 75442461 -101531679 + L2 LINE L2 2977 3264 -8 1999 137 23 3 chrX 75442529 75442835 -101531305 + AluJb SINE Alu 1 312 0 392 272 74 40 chrX 75443044 75443193 -101530947 + MIR SINE MIR 39 190 -65 287 316 37 14 chrX 75444165 75444311 -101529829 - MER5B DNA MER1_type -16 165 21 548 273 78 50 chrX 75445063 75445272 -101528868 + MIR SINE MIR 3 221 -41 1997 111 7 10 chrX 75445272 75445560 -101528580 + AluSc SINE Alu 1 287 -22 548 273 78 50 chrX 75445560 75445592 -101528548 + MIR SINE MIR 221 251 -11 371 291 96 99 chrX 75445800 75446082 -101528058 + L2 LINE L2 2992 3272 0 382 320 84 53 chrX 75447338 75447732 -101526408 + L2 LINE L2 2182 2587 -727 225 0 0 0 chrX 75447767 75447792 -101526348 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1306 231 40 0 chrX 75447795 75448113 -101526027 + AluJo SINE Alu 1 329 0 4873 222 28 34 chrX 75448114 75449398 -101524742 - L1MD3 LINE L1 -17 7978 6703 823 209 40 10 chrX 75449403 75449604 -101524536 + L1 LINE L1 3993 4199 -1947 19575 187 25 15 chrX 75449613 75454569 -101519571 + L1MA1 LINE L1 16 5067 -2654 2414 73 0 3 chrX 75454569 75454872 -101519268 - AluY SINE Alu -9 302 1 19575 187 25 15 chrX 75454872 75457181 -101516959 + L1MA1 LINE L1 5067 7351 -370 19388 79 13 7 chrX 75457182 75459758 -101514382 - HERVL LTR ERVL -1285 4369 1778 3025 100 0 0 chrX 75459746 75460146 -101513994 - HERVL LTR ERVL -2639 3015 2616 * 2612 149 9 0 chrX 75460173 75460603 -101513537 + MER57B LTR ERV1 1 434 0 1637 229 30 16 chrX 75460606 75461034 -101513106 + L1MA7 LINE L1 5858 6291 0 1211 220 39 58 chrX 75461050 75461464 -101512676 - L1M4b LINE L1 -5232 1627 1222 4080 156 32 6 chrX 75461774 75462467 -101511673 + MER50 LTR ERV1 12 722 -12 4204 148 3 23 chrX 75462467 75463155 -101510985 + MER50-int LTR ERV1 7 680 -6525 311 55 364 0 chrX 75463156 75463211 -101510929 + MER83B-int LTR ERV1 3686 3760 -1120 1117 183 9 0 chrX 75463211 75463441 -101510699 - L1 LINE L1 -1606 4540 4309 244 343 93 23 chrX 75463888 75464060 -101510080 + LTR33A LTR ERVL 93 276 -247 7322 33 0 0 chrX 75464411 75465938 -101508202 - L1PA4 LINE L1 0 6155 4643 2173 119 0 0 chrX 75467444 75467754 -101506386 - AluSq SINE Alu -3 310 1 397 313 38 15 chrX 75467838 75467969 -101506171 + MER5A DNA MER1_type 49 182 -7 1054 158 25 0 chrX 75468144 75468346 -101505794 + L1MA9 LINE L1 6099 6305 -7 1681 204 198 0 chrX 75468572 75468955 -101505185 + MER74C LTR ERVL 2 460 0 339 370 112 23 chrX 75469353 75469656 -101504484 - L2 LINE L2 -16 3256 2927 2401 225 42 37 chrX 75470328 75470816 -101503324 + MLT2B3 LTR ERVL 2 495 -59 508 14 29 0 chrX 75470816 75470885 -101503255 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 2401 225 42 37 chrX 75470885 75470938 -101503202 + MLT2B3 LTR ERVL 495 546 -8 506 266 107 10 chrX 75471529 75471819 -101502321 - L1MC5 LINE L1 -35 7926 7609 478 291 50 37 chrX 75471934 75472175 -101501965 - L1MC4 LINE L1 -1 8041 7798 372 298 32 19 chrX 75472280 75472438 -101501702 + MIR SINE MIR 97 256 -6 23 0 0 0 chrX 75472681 75472704 -101501436 + AT_rich Low_complexity Low_complexity 1 23 0 356 335 35 35 chrX 75472727 75472927 -101501213 - L2 LINE L2 -194 3078 2879 2190 119 0 0 chrX 75472947 75473317 -101500823 + AluSg SINE Alu 1 370 0 939 299 124 22 chrX 75473388 75473832 -101500308 - L2 LINE L2 -566 2748 2260 422 362 0 9 chrX 75474559 75474675 -101499465 - MER91A DNA MER1_type -81 115 1 217 255 0 0 chrX 75474752 75474803 -101499337 + MIR SINE MIR 79 129 -133 499 298 111 19 chrX 75475205 75475520 -101498620 + L1MC4a LINE L1 5611 5954 -1854 1562 97 4 0 chrX 75475965 75476203 -101497937 - L1P LINE L1 -3635 2511 2273 5292 111 73 2 chrX 75476204 75477638 -101496502 + L1PA12 LINE L1 4667 6158 -10 2462 105 19 8 chrX 75478768 75479139 -101495001 - THE1C LTR MaLR 0 375 1 387 333 76 61 chrX 75479302 75479698 -101494442 + L1MEd LINE L1 415 816 -5303 198 182 26 13 chrX 75479728 75479805 -101494335 + (TA)n Simple_repeat Simple_repeat 2 79 0 805 301 87 25 chrX 75480043 75480616 -101493524 + L1MC4a LINE L1 5263 5820 -346 26 30 0 0 chrX 75481103 75481136 -101493004 + AT_rich Low_complexity Low_complexity 1 33 0 829 256 71 8 chrX 75482392 75482619 -101491521 - L1ME2 LINE L1 -14 6150 5902 1698 91 12 8 chrX 75482619 75482871 -101491269 - L1PA8 LINE L1 -2 6170 5918 829 256 71 8 chrX 75482871 75482909 -101491231 - L1ME2 LINE L1 -262 5902 5868 704 36 0 0 chrX 75482917 75483001 -101491139 - L1PA8 LINE L1 -74 6098 6015 1001 72 0 7 chrX 75483105 75483243 -101490897 + L1PA8 LINE L1 6033 6169 -3 344 179 45 0 chrX 75483266 75483333 -101490807 - L1ME2 LINE L1 -311 5855 5786 2289 231 17 24 chrX 75483355 75483939 -101490201 - L1MD3 LINE L1 -10 7985 7406 483 213 16 33 chrX 75483939 75484061 -101490079 - MLT1F1 LTR MaLR -447 120 1 2350 244 19 22 chrX 75484063 75484771 -101489369 - L1MD3 LINE L1 -719 7276 6610 407 341 24 3 chrX 75484955 75485107 -101489033 - MER5A DNA MER1_type 0 189 26 211 252 119 98 chrX 75485883 75486026 -101488114 - MER5A DNA MER1_type -43 146 1 1406 58 0 0 chrX 75486609 75486781 -101487359 + AluY SINE Alu 131 302 -9 409 314 22 38 chrX 75486908 75487093 -101487047 - MER5A DNA MER1_type -1 188 7 192 250 84 79 chrX 75487173 75487340 -101486800 + MER5B DNA MER1_type 18 177 -1 218 301 8 73 chrX 75487573 75487696 -101486444 + MIR SINE MIR 148 262 0 1729 91 17 0 chrX 75488277 75488507 -101485633 - AluSg SINE Alu -18 292 59 568 194 5 0 chrX 75538507 75538633 -101435507 - L1MB1 LINE L1 -339 5829 5699 698 228 99 24 chrX 75538633 75538844 -101435296 - MIR SINE MIR -5 257 31 426 96 0 0 chrX 75539304 75539377 -101434763 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1286 117 0 6 chrX 75539377 75539556 -101434584 - AluSg/x SINE Alu -27 285 108 1931 239 79 48 chrX 75539608 75540165 -101433975 - MLT1E LTR MaLR -19 574 1 21 0 0 0 chrX 75541642 75541663 -101432477 + AT_rich Low_complexity Low_complexity 1 21 0 1837 132 0 18 chrX 75541679 75541951 -101432189 - MER4A LTR ERV1 -9 655 389 180 0 0 0 chrX 75541953 75541973 -101432167 + (TTG)n Simple_repeat Simple_repeat 2 21 0 270 256 0 51 chrX 75542379 75542457 -101431683 + L2 LINE L2 3230 3303 -10 1454 139 205 30 chrX 75542466 75542803 -101431337 - MER4A LTR ERV1 -267 397 2 2300 97 0 6 chrX 75543072 75543383 -101430757 - AluSx SINE Alu -3 309 1 2142 147 8 8 chrX 75543942 75544295 -101429845 + THE1A LTR MaLR 1 353 -2 10406 108 34 16 chrX 75544295 75545844 -101428296 + THE1A-int LTR MaLR 2 1580 0 2361 118 8 8 chrX 75545844 75546199 -101427941 + THE1A LTR MaLR 1 355 0 2382 284 72 40 chrX 75546385 75547363 -101426777 + L1M3 LINE L1 4 1012 -4879 2257 237 70 7 chrX 75547385 75548156 -101425984 + L1M3 LINE L1 2347 3166 -2804 * 4486 215 28 14 chrX 75548143 75549223 -101424917 + L1M3 LINE L1 3387 4481 -1489 10227 231 23 48 chrX 75550569 75552637 -101421503 + L1PA16 LINE L1 712 2831 -3392 4470 43 4 0 chrX 75552637 75553194 -101420946 + L1PA7 LINE L1 5594 6152 -2 10227 231 23 48 chrX 75553194 75555849 -101418291 + L1PA16 LINE L1 2831 5386 -837 1796 153 25 69 chrX 75555849 75556241 -101417899 + THE1C LTR MaLR 1 375 0 10227 231 23 48 chrX 75556241 75557043 -101417097 + L1PA16 LINE L1 5386 6207 -16 2795 218 16 14 chrX 75557065 75558199 -101415941 + L1M3 LINE L1 4467 5607 -385 * 2859 201 11 20 chrX 75558197 75558809 -101415331 + L1MB1 LINE L1 5340 5946 -222 1734 302 25 25 chrX 75558877 75559588 -101414552 + L1PB2 LINE L1 469 1179 -5684 6704 234 96 19 chrX 75559602 75564571 -101409569 + L1PB2 LINE L1 1407 6866 -1 206 105 53 35 chrX 75564574 75564591 -101409549 + A-rich Low_complexity Low_complexity 3 18 -42 1009 221 4 4 chrX 75564591 75564817 -101409323 + L1MB1 LINE L1 5936 6161 -7 206 105 53 35 chrX 75564817 75564856 -101409284 + A-rich Low_complexity Low_complexity 18 60 0 247 319 0 0 chrX 75566031 75566122 -101408018 + T-rich Low_complexity Low_complexity 1 91 0 424 195 0 35 chrX 75566307 75566394 -101407746 + L2 LINE L2 3188 3271 -42 342 307 26 9 chrX 75566360 75566474 -101407666 - MER5A DNA MER1_type -67 122 7 * 1158 122 0 0 chrX 75566678 75566858 -101407282 + (TA)n Simple_repeat Simple_repeat 1 180 0 2397 132 75 10 chrX 75567065 75567467 -101406673 + MSTA LTR MaLR 1 428 0 248 342 61 18 chrX 75569698 75569812 -101404328 - MIR SINE MIR -121 141 23 4864 164 16 42 chrX 75569885 75570873 -101403267 + LTR5 LTR ERVK 1 963 -6 226 292 52 52 chrX 75570923 75571019 -101403121 - MIR3 SINE MIR -15 193 98 576 314 77 4 chrX 75571580 75571792 -101402348 - MIR SINE MIR -21 241 21 2063 134 150 5 chrX 75572427 75572801 -101401339 + MSTA LTR MaLR 1 428 0 7171 186 14 82 chrX 75572803 75573387 -101400753 + MSTA-int LTR MaLR 3 625 -955 605 63 0 0 chrX 75573387 75573466 -101400674 + MADE1 DNA Mariner 1 79 -1 7171 186 14 82 chrX 75573466 75574497 -101399643 + MSTA-int LTR MaLR 625 1580 0 1640 163 169 5 chrX 75574497 75574865 -101399275 + MSTA LTR MaLR 1 428 0 13049 196 14 16 chrX 75575319 75579357 -101394783 + L1PB2 LINE L1 2119 6149 -2 268 257 0 0 chrX 75579882 75579952 -101394188 + MIR SINE MIR 183 252 -10 3547 175 44 42 chrX 75580795 75581573 -101392567 + LTR19C LTR ERV1 1 779 0 2930 287 57 16 chrX 75581793 75583174 -101390966 - L2 LINE L2 0 3313 1753 22 0 0 0 chrX 75583184 75583206 -101390934 + AT_rich Low_complexity Low_complexity 1 22 0 188 222 32 32 chrX 75583517 75583580 -101390560 + L2 LINE L2 1810 1872 -1442 185 346 163 7 chrX 75583945 75584098 -101390042 + MIR3 SINE MIR 19 195 -13 7818 40 1 1 chrX 75584321 75585277 -101388863 - L1P LINE L1 -1454 4692 3737 7444 34 6 0 chrX 75585273 75586694 -101387446 + L1PA4 LINE L1 4727 6152 -3 435 233 86 45 chrX 75586753 75586937 -101387203 - MLT1J2 LTR MaLR 0 423 260 949 113 7 13 chrX 75586977 75587128 -101387012 - L1PA15 LINE L1 -15 6150 6001 1614 259 71 4 chrX 75587129 75587596 -101386544 - LTR40a LTR ERVL -17 502 5 442 291 79 24 chrX 75587888 75588053 -101386087 - MIR SINE MIR -61 201 28 328 203 0 0 chrX 75588149 75588212 -101385928 + MLT2C1 LTR ERVL 1 63 -334 11740 152 17 13 chrX 75588212 75589654 -101384486 - Tigger1 DNA MER2_type 0 2418 964 2193 113 0 0 chrX 75589654 75589977 -101384163 + AluSc SINE Alu 1 309 0 11740 152 17 13 chrX 75589977 75590550 -101383590 - Tigger1 DNA MER2_type -1454 964 395 745 106 80 15 chrX 75590550 75590771 -101383369 - L1P4 LINE L1 -571 5597 5329 * 4778 136 47 7 chrX 75590766 75591743 -101382397 - L1PB3 LINE L1 0 6154 5149 * 7662 229 11 8 chrX 75591710 75593638 -101380502 - L1PB3 LINE L1 -1514 4632 2698 1390 96 0 0 chrX 75593641 75593818 -101380322 - AluSq SINE Alu -70 243 67 1716 124 4 4 chrX 75593818 75593857 -101380283 - L1PA16 LINE L1 -188 5978 5940 2365 177 32 8 chrX 75593857 75594497 -101379643 - L1MA9 LINE L1 -374 5938 5264 1229 283 55 19 chrX 75594497 75595385 -101378755 + ERVL LTR ERVL 25 1063 -4544 1094 245 0 0 chrX 75595404 75595620 -101378520 + ERVL LTR ERVL 1350 1565 -4199 * 9015 231 29 35 chrX 75595619 75597758 -101376382 + ERVL LTR ERVL 3020 5145 -619 2637 254 51 10 chrX 75597758 75598448 -101375692 - L1M4 LINE L1 -2987 3395 2621 225 0 0 0 chrX 75598448 75598473 -101375667 + (TA)n Simple_repeat Simple_repeat 1 25 0 2637 254 51 10 chrX 75598473 75599042 -101375098 - L1M4 LINE L1 -3761 2621 2077 254 93 94 3 chrX 75599054 75599113 -101375027 + MLT2B1 LTR ERVL 455 520 0 218 269 19 0 chrX 75599180 75599232 -101374908 - MIR SINE MIR -114 148 96 323 312 25 33 chrX 75599509 75599688 -101374452 + LTR16B LTR ERVL 262 464 0 21 57 0 0 chrX 75601051 75601086 -101373054 + AT_rich Low_complexity Low_complexity 1 35 0 1077 269 79 8 chrX 75601605 75601973 -101372167 - MSTD LTR MaLR -2 394 1 5861 271 40 35 chrX 75601973 75602096 -101372044 - MSTD-int LTR MaLR 0 1735 1614 7494 32 0 1 chrX 75602096 75603640 -101370500 - L1PA3 LINE L1 -5 6150 4608 5861 271 40 35 chrX 75603640 75603654 -101370486 - MSTD-int LTR MaLR -121 1614 1602 1624 192 11 7 chrX 75603654 75603941 -101370199 + AluJo SINE Alu 1 288 -24 5861 271 40 35 chrX 75603941 75605527 -101368613 - MSTD-int LTR MaLR -133 1602 2 280 185 0 0 chrX 75605529 75605583 -101368557 - MSTD LTR MaLR 0 396 343 6906 65 3 1 chrX 75605598 75607048 -101367092 - L1PA7 LINE L1 -15 6139 4689 11179 109 0 5 chrX 75607048 75608733 -101365407 + L1P LINE L1 2282 3957 -2189 1276 241 75 12 chrX 75608733 75609065 -101365075 - MSTD LTR MaLR -38 358 6 307 232 37 37 chrX 75609593 75609675 -101364465 + L2 LINE L2 3229 3310 -3 1092 246 81 3 chrX 75609845 75610130 -101364010 - MER58B DNA MER1_type -34 307 1 1242 208 90 48 chrX 75611084 75611540 -101362600 + Charlie4a DNA MER1_type 19 493 -15 2122 138 0 3 chrX 75611981 75612292 -101361848 + AluSx SINE Alu 3 312 0 410 277 109 55 chrX 75612977 75613179 -101360961 + MLT1I LTR MaLR 197 409 0 21 71 0 0 chrX 75613326 75613368 -101360772 + AT_rich Low_complexity Low_complexity 1 42 0 225 180 0 0 chrX 75615516 75615566 -101358574 + GA-rich Low_complexity Low_complexity 2 51 0 232 313 50 61 chrX 75616344 75616443 -101357697 + MER5A DNA MER1_type 64 161 -28 201 257 86 43 chrX 75616805 75616875 -101357265 + MER5A DNA MER1_type 43 115 -74 414 0 0 0 chrX 75616879 75616925 -101357215 + (CA)n Simple_repeat Simple_repeat 2 47 0 210 37 0 0 chrX 75617600 75617627 -101356513 + (TG)n Simple_repeat Simple_repeat 2 28 0 1317 267 53 69 chrX 75617658 75618238 -101355902 + L1MC3 LINE L1 6 576 -5469 810 264 34 78 chrX 75618304 75618684 -101355456 + L1MC3 LINE L1 553 913 -5132 954 236 117 89 chrX 75618684 75619223 -101354917 - MER41C LTR ERV1 0 554 1 810 264 34 78 chrX 75619223 75619278 -101354862 + L1MC3 LINE L1 913 969 -5076 3006 166 83 35 chrX 75619287 75619972 -101354168 - LTR8A LTR ERV1 0 727 10 1572 245 87 32 chrX 75619981 75620626 -101353514 + L1MC3 LINE L1 1186 1977 -4587 2135 164 8 16 chrX 75620630 75621009 -101353131 - MER50 LTR ERV1 -24 710 335 3011 247 31 14 chrX 75621011 75622389 -101351751 + L1MC3 LINE L1 4748 6156 -746 4987 211 40 22 chrX 75622415 75622654 -101351486 + L1MC3 LINE L1 6788 7021 -1182 1762 123 0 0 chrX 75622654 75622934 -101351206 + AluSg SINE Alu 37 316 0 4987 211 40 22 chrX 75622934 75623840 -101350300 + L1MC3 LINE L1 7021 7960 -243 1937 210 0 3 chrX 75623840 75624206 -101349934 - MLT1A1 LTR MaLR 0 365 1 4987 211 40 22 chrX 75624206 75624282 -101349858 + L1MC3 LINE L1 7960 8033 -170 237 33 0 0 chrX 75624284 75624314 -101349826 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chrX 75624599 75624627 -101349513 + AT_rich Low_complexity Low_complexity 1 28 0 197 333 13 0 chrX 75625669 75625747 -101348393 - MIR SINE MIR -108 154 76 200 338 0 0 chrX 75627505 75627573 -101346567 - MIR SINE MIR -1 261 194 736 270 84 14 chrX 75627707 75627922 -101346218 + MIR SINE MIR 13 242 -20 456 367 67 0 chrX 75628014 75628224 -101345916 + Charlie8 DNA MER1_type 2 225 -2192 3483 134 9 0 chrX 75628224 75628857 -101345283 + L1PA8A LINE L1 4812 5448 -683 479 296 40 80 chrX 75628926 75629040 -101345100 + L1MC4a LINE L1 5415 5532 -2276 5609 24 3 0 chrX 75629040 75629699 -101344441 - L1PA4 LINE L1 -3 6152 5492 479 296 40 80 chrX 75629699 75630087 -101344053 + L1MC4a LINE L1 5532 5897 -1911 4109 127 15 5 chrX 75630327 75630989 -101343151 + L1PA16 LINE L1 5489 6157 -9 22522 25 0 0 chrX 75631030 75634477 -101339663 - L1PA2 LINE L1 0 6155 2709 24 32 0 0 chrX 75634538 75634569 -101339571 + AT_rich Low_complexity Low_complexity 1 31 0 663 315 48 66 chrX 75634760 75635259 -101338881 + MLT1J LTR MaLR 4 493 -18 24 32 0 0 chrX 75635422 75635453 -101338687 + AT_rich Low_complexity Low_complexity 1 31 0 554 252 7 28 chrX 75635507 75635624 -101338516 + Tigger3(Golem) DNA MER2_type 3 118 -1113 1917 123 151 3 chrX 75635624 75635941 -101338199 + THE1B LTR MaLR 1 364 0 554 252 7 28 chrX 75635941 75635966 -101338174 + Tigger3(Golem) DNA MER2_type 118 142 -1089 * 1519 149 8 30 chrX 75635963 75636225 -101337915 + Tigger3(Golem) DNA MER2_type 2771 3026 -3 12294 191 35 74 chrX 75636324 75640633 -101333507 + L1M1 LINE L1 25 3959 -3046 2217 87 0 50 chrX 75640633 75640955 -101333185 + AluY SINE Alu 1 306 -5 12294 191 35 74 chrX 75640955 75643395 -101330745 + L1M1 LINE L1 3959 6495 -510 5736 135 9 19 chrX 75643408 75644545 -101329595 + L1PB2 LINE L1 5023 6149 -2 707 323 77 30 chrX 75644613 75645173 -101328967 - L1MEc LINE L1 -5743 653 68 906 201 27 22 chrX 75646060 75646072 -101328068 - MER5A DNA MER1_type -3 186 176 2040 118 21 0 chrX 75646072 75646359 -101327781 - AluSx SINE Alu -19 293 1 906 201 27 22 chrX 75646359 75646530 -101327610 - MER5A DNA MER1_type -13 176 2 315 290 20 0 chrX 75646552 75646652 -101327488 + L1M4 LINE L1 4946 5047 -1099 1551 226 0 3 chrX 75646677 75646987 -101327153 - L1PA15 LINE L1 -5 6160 5852 782 113 24 0 chrX 75646988 75647112 -101327028 - L1P4 LINE L1 -713 5452 5326 5327 224 22 8 chrX 75647113 75648445 -101325695 + L1P LINE L1 3071 4421 -1725 2062 204 2 0 chrX 75648449 75648881 -101325259 + L1P LINE L1 4842 5274 -872 370 182 0 23 chrX 75648893 75648981 -101325159 + L1M4 LINE L1 5080 5165 -981 2028 253 73 13 chrX 75648999 75650560 -101323580 + L1MB4 LINE L1 1306 3055 -3327 841 160 65 0 chrX 75650577 75650746 -101323394 + L1MA9 LINE L1 6090 6269 -43 25 31 0 0 chrX 75650747 75650779 -101323361 + AT_rich Low_complexity Low_complexity 1 32 0 4999 161 2 9 chrX 75650818 75652037 -101322103 - L1PA16 LINE L1 -2 6164 4939 1439 224 6 6 chrX 75652043 75652365 -101321775 + L1PA16 LINE L1 4615 4936 -1210 1506 201 3 136 chrX 75652403 75652756 -101321384 - MLT2D LTR ERVL -10 387 82 433 83 0 0 chrX 75652760 75652820 -101321320 - L1PA10 LINE L1 -711 5452 5393 4885 78 8 3 chrX 75652820 75653483 -101320657 + L1PA10 LINE L1 5483 6149 -19 180 0 0 0 chrX 75653483 75653503 -101320637 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 339 256 33 0 chrX 75653507 75653597 -101320543 - MLT2D LTR ERVL -304 93 1 3686 238 34 20 chrX 75653603 75654371 -101319769 + L1MB4 LINE L1 4879 5635 -781 13354 162 33 3 chrX 75654371 75656716 -101317424 + Tigger1 DNA MER2_type 2 2418 0 3686 238 34 20 chrX 75656716 75657464 -101316676 + L1MB4 LINE L1 5635 6409 -7 255 380 31 36 chrX 75657474 75657698 -101316442 - LTR67 LTR ERVL -84 473 251 512 233 50 19 chrX 75657792 75657951 -101316189 + MER104 DNA Tc2 14 177 -3 284 329 185 28 chrX 75658238 75658454 -101315686 - L3 LINE CR1 -901 676 427 613 315 15 15 chrX 75658570 75658773 -101315367 + MIR SINE MIR 1 203 -59 251 150 0 0 chrX 75663260 75663300 -101310840 - MIR SINE MIR -11 251 212 225 279 25 25 chrX 75663438 75663517 -101310623 + L2 LINE L2 1876 1954 -1360 362 266 53 0 chrX 75663578 75663672 -101310468 + MLT1H LTR MaLR 445 543 -6 1666 185 137 8 chrX 75663723 75664102 -101310038 + MSTA LTR MaLR 1 428 0 7288 156 17 35 chrX 75664105 75665415 -101308725 + MSTA-int LTR MaLR 4 1289 -291 4786 121 23 56 chrX 75665416 75666277 -101307863 - MER4D LTR ERV1 -37 835 3 769 268 39 8 chrX 75666295 75666549 -101307591 - MIR SINE MIR 0 262 1 385 313 35 9 chrX 75667361 75667476 -101306664 + L2 LINE L2 3196 3313 0 24 32 0 0 chrX 75667638 75667669 -101306471 + AT_rich Low_complexity Low_complexity 1 31 0 698 285 26 18 chrX 75668288 75668516 -101305624 - MIR SINE MIR -11 251 22 2161 130 0 0 chrX 75668921 75669214 -101304926 - AluSg SINE Alu -17 293 1 32 0 0 0 chrX 75669216 75669248 -101304892 + AT_rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chrX 75669623 75669649 -101304491 + (CA)n Simple_repeat Simple_repeat 2 27 0 1856 165 0 20 chrX 75669706 75670003 -101304137 - AluSx SINE Alu -19 293 3 637 294 142 0 chrX 75670046 75670328 -101303812 - MER5C DNA MER1_type -1 323 2 291 340 90 0 chrX 75671234 75671334 -101302806 - L2 LINE L2 -10 3303 3195 507 237 24 81 chrX 75671372 75671583 -101302557 + HsTC2 DNA Tc2 3 201 -1697 735 267 34 78 chrX 75671723 75672018 -101302122 + HsTC2 DNA Tc2 1012 1453 -445 3682 43 0 0 chrX 75672018 75672462 -101301678 + L1PA6 LINE L1 5700 6143 -11 735 267 34 78 chrX 75672462 75672609 -101301531 + HsTC2 DNA Tc2 1453 1605 -293 3242 240 79 29 chrX 75672642 75674599 -101299541 + L1MD2 LINE L1 4292 6346 -13 1157 196 70 24 chrX 75674657 75674998 -101299142 + MER69 DNA AcHobo 2170 2526 0 701 292 40 31 chrX 75675704 75675930 -101298210 - MLT2F LTR ERVL -257 406 179 210 91 0 0 chrX 75676504 75676537 -101297603 + (TAA)n Simple_repeat Simple_repeat 2 34 0 2387 323 27 44 chrX 75676649 75677581 -101296559 + L1PA13 LINE L1 2 917 -5870 2349 237 56 40 chrX 75677617 75677963 -101296177 + L1PA13 LINE L1 1296 1635 -5152 351 0 0 0 chrX 75677963 75678002 -101296138 + (CA)n Simple_repeat Simple_repeat 2 40 0 2349 237 56 40 chrX 75678002 75678385 -101295755 + L1PA13 LINE L1 1635 2037 -4750 7872 241 51 16 chrX 75678407 75680706 -101293434 + L1PA13 LINE L1 2312 4691 -2106 3036 158 52 2 chrX 75680706 75681207 -101292933 - MER57B-int LTR ERV1 -7011 526 1 2728 127 31 0 chrX 75681210 75681628 -101292512 - MER57B LTR ERV1 -3 431 1 1484 201 31 0 chrX 75681628 75681921 -101292219 + L1PA15 LINE L1 5857 6158 -7 24 0 0 0 chrX 75682302 75682326 -101291814 + AT_rich Low_complexity Low_complexity 1 24 0 195 272 35 88 chrX 75682958 75683072 -101291068 + MIR SINE MIR 11 118 -144 203 294 0 0 chrX 75683359 75683410 -101290730 + L2 LINE L2 3262 3312 -1 446 333 57 65 chrX 75683430 75683815 -101290325 - L2 LINE L2 0 3313 2932 1105 359 80 25 chrX 75683874 75684673 -101289467 - L2 LINE L2 -541 2773 1931 221 381 24 24 chrX 75685109 75685277 -101288863 - L2 LINE L2 -639 2675 2508 21 71 0 0 chrX 75685887 75685929 -101288211 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chrX 75685972 75685994 -101288146 + AT_rich Low_complexity Low_complexity 1 22 0 1890 192 37 25 chrX 75686216 75686754 -101287386 - MLT2A2 LTR ERVL -8 546 1 7086 106 9 1 chrX 75686754 75687733 -101286407 - HERVL-A2 LTR ERVL 0 5654 4668 * 12673 119 11 14 chrX 75687729 75688972 -101285168 - HERVL-A1 LTR ERVL -3770 1884 649 2171 102 0 3 chrX 75688972 75689265 -101284875 + AluSx SINE Alu 3 294 -18 12673 119 11 14 chrX 75689265 75689912 -101284228 - HERVL-A1 LTR ERVL -5005 649 1 2114 167 31 36 chrX 75689912 75690463 -101283677 - MLT2A1 LTR ERVL 0 554 1 578 287 32 38 chrX 75690474 75690823 -101283317 + MLT1G3 LTR MaLR 182 536 -6 219 361 21 31 chrX 75691097 75691194 -101282946 - L2 LINE L2 -21 3292 3197 309 197 0 56 chrX 75691325 75691396 -101282744 + L2 LINE L2 2858 2924 -348 837 326 139 21 chrX 75691631 75692291 -101281849 - L2 LINE L2 0 3313 2575 188 258 10 0 chrX 75692291 75692388 -101281752 + (TAAA)n Simple_repeat Simple_repeat 4 101 0 201 261 0 0 chrX 75692388 75692434 -101281706 + GA-rich Low_complexity Low_complexity 1 46 0 2458 78 10 0 chrX 75692793 75693102 -101281038 - AluSp SINE Alu -1 312 1 2033 234 72 24 chrX 75694072 75694610 -101279530 + MLT1F1 LTR MaLR 1 564 -3 21 0 0 0 chrX 75694613 75694634 -101279506 + AT_rich Low_complexity Low_complexity 1 21 0 1322 214 5 106 chrX 75694664 75695070 -101279070 + MLT1A1 LTR MaLR 1 365 0 7089 233 48 38 chrX 75695070 75695773 -101278367 + MLT1A1-int LTR MaLR 1 696 -1039 2588 110 6 6 chrX 75695773 75696136 -101278004 - THE1B LTR MaLR -1 363 1 7089 233 48 38 chrX 75696136 75697150 -101276990 + MLT1A1-int LTR MaLR 696 1735 0 709 196 0 23 chrX 75697150 75697283 -101276857 + MLT1A1 LTR MaLR 1 130 -298 378 303 170 30 chrX 75697751 75698062 -101276078 + L1MC4 LINE L1 6683 7068 -974 808 259 119 31 chrX 75698115 75698571 -101275569 + L1MC4 LINE L1 7002 7492 -550 294 275 111 62 chrX 75698662 75698906 -101275234 - LTR41 LTR ERVL -6 767 512 22 0 0 0 chrX 75699194 75699216 -101274924 + AT_rich Low_complexity Low_complexity 1 22 0 670 226 68 6 chrX 75699230 75699407 -101274733 - LTR41 LTR ERVL -585 188 1 523 265 117 51 chrX 75699410 75699904 -101274236 + L1MC4 LINE L1 7510 8036 -6 21 71 0 0 chrX 75700437 75700479 -101273661 + AT_rich Low_complexity Low_complexity 1 42 0 444 250 74 57 chrX 75701071 75701247 -101272893 + MIR SINE MIR 34 212 -50 605 238 112 36 chrX 75701514 75701737 -101272403 - MIR SINE MIR 0 262 23 23 0 0 0 chrX 75702615 75702638 -101271502 + AT_rich Low_complexity Low_complexity 1 23 0 288 53 0 0 chrX 75702670 75702708 -101271432 + (CA)n Simple_repeat Simple_repeat 2 39 0 1383 206 99 26 chrX 75705608 75705952 -101268188 - MLT1A2 LTR MaLR -1 373 5 2348 81 3 0 chrX 75706138 75706436 -101267704 + AluSp SINE Alu 1 299 -14 22 56 0 0 chrX 75706970 75707006 -101267134 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chrX 75708085 75708110 -101266030 + AT_rich Low_complexity Low_complexity 1 25 0 191 291 0 0 chrX 75709085 75709140 -101265000 - L3 LINE CR1 -2 1575 1521 461 260 132 29 chrX 75709244 75709448 -101264692 - MIR SINE MIR -36 226 2 2236 108 0 0 chrX 75711866 75712154 -101261986 - AluSg SINE Alu -22 288 1 184 260 75 144 chrX 75712998 75713171 -101260969 + L3b LINE CR1 1397 1557 -26 757 274 85 11 chrX 75713458 75713739 -101260401 - L2 LINE L2 -775 2539 2238 1428 161 77 21 chrX 75713739 75714048 -101260092 - MER1B DNA MER1_type 0 339 2 311 275 38 36 chrX 75714242 75714381 -101259759 - MIR SINE MIR -62 200 62 354 45 0 0 chrX 75714492 75714536 -101259604 + (CA)n Simple_repeat Simple_repeat 2 45 0 190 274 20 0 chrX 75715146 75715197 -101258943 - MIR SINE MIR -109 153 102 375 336 168 0 chrX 75715267 75715416 -101258724 - MER5A DNA MER1_type -7 182 9 1286 205 32 4 chrX 75715419 75715668 -101258472 - MSTA LTR MaLR -36 392 137 224 265 0 0 chrX 75716127 75716176 -101257964 + (TA)n Simple_repeat Simple_repeat 1 49 0 405 293 99 13 chrX 75716176 75716502 -101257638 - L1MC/D LINE L1 -303 5818 5457 32 79 0 26 chrX 75716506 75716620 -101257520 + AT_rich Low_complexity Low_complexity 1 111 0 222 37 0 0 chrX 75716638 75716665 -101257475 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1485 184 11 25 chrX 75716665 75716942 -101257198 - AluJb SINE Alu -32 280 8 23 33 0 0 chrX 75716949 75716979 -101257161 + AT_rich Low_complexity Low_complexity 1 30 0 278 50 25 0 chrX 75718594 75718634 -101255506 + (TAA)n Simple_repeat Simple_repeat 2 42 0 468 281 81 27 chrX 75718669 75718854 -101255286 - MIR SINE MIR -60 202 8 575 278 5 52 chrX 75719049 75719240 -101254900 + MIR SINE MIR 81 262 0 195 42 0 0 chrX 75720346 75720370 -101253770 + (CA)n Simple_repeat Simple_repeat 2 25 0 614 280 19 0 chrX 75720537 75720694 -101253446 - MIR SINE MIR -21 241 82 186 188 21 62 chrX 75720969 75721017 -101253123 - L2 LINE L2 -33 3280 3235 459 299 8 0 chrX 75722181 75722315 -101251825 - L2 LINE L2 -1230 2084 1950 2009 104 0 0 chrX 75722520 75722798 -101251342 - L1P LINE L1 -1891 4255 3978 * 9428 200 9 7 chrX 75722788 75725512 -101248628 - L1PA13 LINE L1 -211 5952 3222 210 384 0 0 chrX 75725708 75725781 -101248359 - L2 LINE L2 -227 3045 2973 328 274 9 47 chrX 75725953 75726059 -101248081 + L2 LINE L2 3180 3281 -32 186 103 0 0 chrX 75726067 75726096 -101248044 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chrX 75726641 75726664 -101247476 + AT_rich Low_complexity Low_complexity 1 23 0 378 219 0 0 chrX 75726983 75727056 -101247084 + MIR3 SINE MIR 124 196 -12 29 0 0 0 chrX 75727289 75727318 -101246822 + AT_rich Low_complexity Low_complexity 1 29 0 2287 87 3 7 chrX 75727442 75727751 -101246389 - AluY SINE Alu -1 310 3 2177 83 28 0 chrX 75727753 75728043 -101246097 - AluY SINE Alu -9 302 5 211 316 0 26 chrX 75728284 75728360 -101245780 + GA-rich Low_complexity Low_complexity 6 79 0 447 222 69 13 chrX 75728564 75728689 -101245451 + L1MA9 LINE L1 6178 6300 0 198 261 15 31 chrX 75729673 75729738 -101244402 + L3b LINE CR1 1269 1332 -251 427 351 12 0 chrX 75729835 75730003 -101244137 - L2 LINE L2 -689 2625 2456 1946 177 53 127 chrX 75730966 75731564 -101242576 - MLT2B3 LTR ERVL 0 554 1 12718 133 24 1 chrX 75733089 75735925 -101238215 + L1PA10 LINE L1 3293 6165 -3 2467 45 10 10 chrX 75735930 75736240 -101237900 + AluY SINE Alu 1 310 -1 24 0 0 0 chrX 75736373 75736397 -101237743 + AT_rich Low_complexity Low_complexity 1 24 0 406 306 135 18 chrX 75737185 75737414 -101236726 + MIR SINE MIR 1 256 -6 23 0 0 0 chrX 75738133 75738156 -101235984 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chrX 75738486 75738524 -101235616 + AT_rich Low_complexity Low_complexity 1 38 0 1433 130 0 14 chrX 75738524 75738740 -101235400 - AluSq SINE Alu -18 295 83 183 306 20 0 chrX 75738816 75738865 -101235275 - MIR SINE MIR -129 79 30 28 71 0 0 chrX 75739824 75739880 -101234260 + AT_rich Low_complexity Low_complexity 1 56 0 515 246 48 70 chrX 75740098 75740285 -101233855 + MIR SINE MIR 80 262 0 938 317 23 56 chrX 75740327 75740807 -101233333 + LTR16B LTR ERVL 1 464 0 28 48 0 0 chrX 75741953 75741995 -101232145 + AT_rich Low_complexity Low_complexity 1 42 0 1820 293 98 6 chrX 75742161 75742949 -101231191 + L2 LINE L2 2293 3153 -160 1822 139 7 7 chrX 75743105 75743385 -101230755 - MER4E LTR ERV1 0 779 500 3829 173 29 7 chrX 75743406 75744095 -101230045 + MER50 LTR ERV1 8 711 -23 1468 176 104 3 chrX 75744096 75744385 -101229755 - MER4B LTR ERV1 -292 318 1 204 288 161 42 chrX 75744736 75744854 -101229286 + MER5B DNA MER1_type 32 163 -15 285 286 57 29 chrX 75745031 75745136 -101229004 + L2 LINE L2 3187 3294 -19 23 68 0 0 chrX 75745271 75745315 -101228825 + AT_rich Low_complexity Low_complexity 1 44 0 619 141 0 10 chrX 75745859 75745958 -101228182 + MER4A LTR ERV1 1 98 -566 1624 138 11 75 chrX 75745958 75746327 -101227813 + MER4A LTR ERV1 261 664 0 420 118 59 0 chrX 75746330 75746398 -101227742 + MER4A-int LTR ERV1 1 72 -6526 1894 214 115 60 chrX 75746404 75747091 -101227049 + MER50 LTR ERV1 10 734 0 2198 101 60 63 chrX 75747105 75747540 -101226600 + MER50-int LTR ERV1 107 588 -6010 291 223 0 43 chrX 75747596 75747690 -101226450 + MER50-int LTR ERV1 751 840 -5758 1292 247 60 30 chrX 75747737 75748106 -101226034 + MER50-int LTR ERV1 1845 2224 -4107 * 4728 155 97 14 chrX 75748105 75748989 -101225151 + MER4B-int LTR ERV1 189 1146 -5612 231 61 0 0 chrX 75748990 75749023 -101225117 + (TG)n Simple_repeat Simple_repeat 2 34 0 1080 118 79 26 chrX 75749041 75749269 -101224871 + MER4B-int LTR ERV1 1756 1995 -4603 3966 132 96 33 chrX 75751600 75752159 -101221981 + MER4B-int LTR ERV1 1266 1788 -4810 3641 161 27 45 chrX 75752159 75752863 -101221277 - LTR8 LTR ERV1 0 691 1 3966 132 96 33 chrX 75752863 75753731 -101220409 + MER4B-int LTR ERV1 1788 3633 -2965 8960 123 63 24 chrX 75753790 75755436 -101218704 + MER4B-int LTR ERV1 3815 5524 -1074 2454 139 19 5 chrX 75755436 75755854 -101218286 + MER4B-int LTR ERV1 6144 6567 -31 501 126 27 108 chrX 75755854 75755894 -101218246 - THE1C LTR MaLR 0 375 333 2556 39 0 7 chrX 75755894 75756199 -101217941 + AluY SINE Alu 1 303 -8 501 126 27 108 chrX 75756199 75756269 -101217871 - THE1C LTR MaLR -42 333 274 2920 34 0 0 chrX 75756271 75756763 -101217377 - L1P2 LINE L1 -552 5603 5112 14075 228 21 7 chrX 75756763 75760275 -101213865 + L1PA15 LINE L1 1829 5390 -756 2901 130 47 0 chrX 75760285 75760770 -101213370 + L1PA15 LINE L1 5656 6163 -2 7100 38 0 0 chrX 75761836 75762699 -101211441 + L1PA4 LINE L1 5292 6154 -1 6324 158 41 4 chrX 75762918 75764105 -101210035 + Tigger3b DNA MER2_type 1 1231 0 1791 146 11 80 chrX 75764289 75764653 -101209487 - MLT1B LTR MaLR -2 388 50 203 376 128 7 chrX 75764885 75765034 -101209106 + L2 LINE L2 2619 2785 -529 194 343 15 0 chrX 75767856 75767923 -101206217 + MIR SINE MIR 76 143 -65 2315 101 0 0 chrX 75768027 75768334 -101205806 - AluSx SINE Alu -5 307 1 3263 220 14 2 chrX 75819431 75820053 -101154087 + L1M1 LINE L1 1219 1848 -5717 6007 187 17 20 chrX 75820086 75822412 -101151728 + L1M1 LINE L1 3813 6316 -1249 3642 198 41 20 chrX 75822409 75823755 -101150385 + L1MB1 LINE L1 4396 5779 -389 * 1078 191 13 25 chrX 75823757 75823993 -101150147 + AluJo SINE Alu 1 233 -79 1339 224 33 0 chrX 75823993 75824292 -101149848 + L1MB1 LINE L1 5801 6109 -59 2218 116 6 0 chrX 75824432 75824743 -101149397 - AluSq SINE Alu 0 313 1 30 27 0 0 chrX 75825082 75825119 -101149021 + AT_rich Low_complexity Low_complexity 1 37 0 1898 127 10 10 chrX 75825147 75825474 -101148666 - AluSq SINE Alu 0 327 1 4439 107 23 1 chrX 75825639 75826291 -101147849 - L1PA13 LINE L1 -4 6810 6145 6171 164 18 3 chrX 75826291 75827429 -101146711 - L1PA13 LINE L1 -872 5925 4772 824 216 7 0 chrX 75827418 75827566 -101146574 - L1PA13 LINE L1 -6300 487 339 * 11850 180 18 8 chrX 75827564 75828691 -101145449 - L1PA12 LINE L1 -5577 2004 848 1951 129 37 50 chrX 75828691 75829071 -101145069 + THE1C LTR MaLR 1 375 0 11850 180 18 8 chrX 75829071 75829928 -101144212 - L1PA12 LINE L1 -6733 848 1 3922 253 32 72 chrX 75830512 75830839 -101143301 + L1MC4a LINE L1 5258 5597 -2211 1359 238 108 15 chrX 75830839 75831301 -101142839 - MLT1D LTR MaLR 0 505 1 3922 253 32 72 chrX 75831301 75831646 -101142494 + L1MC4a LINE L1 5597 5954 -1854 3169 85 7 2 chrX 75831646 75832091 -101142049 + L1PA13 LINE L1 5711 6157 -6 3922 253 32 72 chrX 75832091 75832544 -101141596 + L1MC4a LINE L1 5954 6294 -1514 1521 170 72 4 chrX 75832544 75832662 -101141478 + AluJo SINE Alu 3 111 -201 186 43 0 0 chrX 75832662 75832685 -101141455 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1521 170 72 4 chrX 75832685 75832842 -101141298 + AluJo SINE Alu 111 297 -15 3922 253 32 72 chrX 75832842 75833416 -101140724 + L1MC4a LINE L1 6294 6890 -918 3710 78 10 2 chrX 75833416 75833905 -101140235 - MER41A LTR ERV1 -61 493 1 857 200 22 6 chrX 75835942 75836122 -101138018 - MLT1D LTR MaLR 0 505 323 799 267 139 58 chrX 75836147 75836577 -101137563 - MLT1E2 LTR MaLR -17 609 145 252 154 0 19 chrX 75836610 75836662 -101137478 + MLT1D LTR MaLR 85 135 -370 3127 194 32 54 chrX 75836662 75838184 -101135956 - L1MB7 LINE L1 -229 7374 5902 417 205 24 0 chrX 75838187 75838270 -101135870 - Tigger5 DNA MER2_type -1 2322 2238 3653 262 35 16 chrX 75838341 75839693 -101134447 - L1MB7 LINE L1 -1672 5893 4516 2828 126 67 13 chrX 75839701 75840176 -101133964 + MER75 DNA T2_type 2 502 -12 19651 185 27 11 chrX 75840176 75844126 -101130014 - L1MB7 LINE L1 -3532 4033 18 974 306 33 42 chrX 75844115 75844668 -101129472 - L1M4c LINE L1 -3568 3389 2894 * 1376 220 34 0 chrX 75844668 75844848 -101129292 - AluJo SINE Alu -7 305 110 237 33 0 0 chrX 75844848 75844878 -101129262 + (TAG)n Simple_repeat Simple_repeat 1 30 0 1376 220 34 0 chrX 75844878 75844992 -101129148 - AluJo SINE Alu -202 110 1 974 306 33 42 chrX 75844992 75845298 -101128842 - L1M4c LINE L1 -4063 2894 2587 312 27 0 0 chrX 75845368 75845405 -101128735 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chrX 75845608 75845630 -101128510 + AT_rich Low_complexity Low_complexity 1 22 0 4453 275 64 36 chrX 75845638 75847947 -101126193 - L1M4c LINE L1 -4521 2436 5 330 256 106 50 chrX 75848054 75848234 -101125906 - L1MC/D LINE L1 -2035 5773 5584 9307 42 0 0 chrX 75848338 75850232 -101123908 - L1PA5 LINE L1 -16 6138 4246 15380 50 7 2 chrX 75850232 75852202 -101121938 + L1PA5 LINE L1 2260 4238 -1908 24 67 0 0 chrX 75852508 75852553 -101121587 + AT_rich Low_complexity Low_complexity 1 45 0 360 278 42 64 chrX 75852656 75852782 -101121358 + L1MEc LINE L1 996 1123 -5273 5812 69 95 0 chrX 75852782 75853817 -101120323 + L1PA6 LINE L1 5042 6154 0 360 278 42 64 chrX 75853817 75854209 -101119931 + L1MEc LINE L1 1123 1503 -4893 5461 191 48 37 chrX 75854352 75854883 -101119257 + L1M4c LINE L1 16 540 -5844 1938 190 85 0 chrX 75854883 75855272 -101118868 - MSTA LTR MaLR -4 424 3 5461 191 48 37 chrX 75855272 75856018 -101118122 + L1M4c LINE L1 540 1307 -5077 1138 237 3 6 chrX 75856030 75856481 -101117659 + L1M4c LINE L1 2292 2741 -3641 22150 119 11 2 chrX 75856497 75860728 -101113412 - L1PA8 LINE L1 -5 6167 1901 198 0 0 0 chrX 75860831 75860853 -101113287 + (TA)n Simple_repeat Simple_repeat 1 22 0 553 188 8 0 chrX 75861039 75861156 -101112984 - L1MB5 LINE L1 -7 6665 6548 1266 265 78 3 chrX 75861182 75861488 -101112652 - MLT1A1 LTR MaLR 0 365 37 6105 239 51 21 chrX 75861509 75862330 -101111810 - L1MB5 LINE L1 -147 6525 5731 2186 93 3 7 chrX 75862330 75862631 -101111509 - AluSc SINE Alu -9 300 1 6105 239 51 21 chrX 75862631 75864566 -101109574 - L1MB5 LINE L1 -941 5731 3691 502 278 38 14 chrX 75864583 75864795 -101109345 - L1MB5 LINE L1 -6324 218 2 25 0 0 0 chrX 75866508 75866533 -101107607 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chrX 75866836 75866866 -101107274 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrX 75867134 75867170 -101106970 + AT_rich Low_complexity Low_complexity 1 36 0 6193 92 18 6 chrX 75867415 75868312 -101105828 + L1PA14 LINE L1 5254 6161 0 416 261 26 65 chrX 75868429 75868582 -101105558 - L2 LINE L2 0 3313 3167 3201 234 65 34 chrX 75869112 75870442 -101103698 + L1M4 LINE L1 5 1416 -5126 842 261 40 26 chrX 75870455 75870727 -101103413 + L1ME2 LINE L1 5781 6056 -108 407 119 0 0 chrX 75870728 75870787 -101103353 + AluJ/FLAM SINE Alu 18 76 -236 2563 35 0 10 chrX 75870897 75871211 -101102929 - AluYb8 SINE Alu -7 311 1 407 370 43 18 chrX 75871332 75871608 -101102532 - HERVL LTR ERVL -3582 2072 1790 813 371 34 28 chrX 75871724 75872368 -101101772 - HERVL LTR ERVL -4335 661 14 518 300 126 17 chrX 75872381 75872611 -101101529 - LTR16B LTR ERVL 0 464 210 270 283 33 17 chrX 75872634 75872754 -101101386 + L1M4 LINE L1 1708 1829 -4996 180 0 0 0 chrX 75872756 75872776 -101101364 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4087 118 41 20 chrX 75872779 75873465 -101100675 + L1PB4 LINE L1 5309 6008 -148 3872 228 42 39 chrX 75873466 75874657 -101099483 - L1MD2 LINE L1 0 6619 5420 180 0 0 0 chrX 75874657 75874677 -101099463 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3872 228 42 39 chrX 75874677 75875224 -101098916 - L1MD2 LINE L1 -1199 5420 4876 353 100 0 17 chrX 75875238 75875298 -101098842 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 344 218 15 38 chrX 75875300 75875433 -101098707 - L1MD2 LINE L1 -4042 2364 2235 1116 301 45 8 chrX 75875488 75875843 -101098297 - L1MD2 LINE L1 -5954 455 88 2031 29 0 0 chrX 75875860 75876098 -101098042 - AluY SINE Alu -29 282 45 262 56 0 0 chrX 75876099 75876135 -101098005 + Alu SINE Alu 6 41 -267 316 286 0 0 chrX 75876138 75876215 -101097925 - L1MD2 LINE L1 -6323 86 10 2715 154 13 8 chrX 75877471 75877945 -101096195 - L1MA4 LINE L1 -364 5936 5461 1679 167 3 3 chrX 75877955 75878254 -101095886 - L1PA15 LINE L1 -2 6163 5865 6522 22 0 1 chrX 75878260 75879018 -101095122 + L1PA3 LINE L1 5396 6152 -3 268 182 0 0 chrX 75879037 75879081 -101095059 + AluSp/q SINE Alu 225 268 -35 3437 169 20 2 chrX 75879100 75879830 -101094310 - L1PA15 LINE L1 -305 5860 5120 2184 245 46 26 chrX 75880278 75880890 -101093250 + MLT1E2 LTR MaLR 1 624 -2 347 291 63 68 chrX 75881593 75881799 -101092341 - L2 LINE L2 -5 3308 3104 380 315 8 31 chrX 75881822 75881949 -101092191 + L2 LINE L2 2963 3086 -227 25 0 0 0 chrX 75882439 75882464 -101091676 + AT_rich Low_complexity Low_complexity 1 25 0 339 96 0 0 chrX 75883034 75883086 -101091054 + (TG)n Simple_repeat Simple_repeat 1 52 0 33 66 0 0 chrX 75883532 75883593 -101090547 + AT_rich Low_complexity Low_complexity 1 61 0 538 233 43 31 chrX 75883869 75884032 -101090108 + L1MC4 LINE L1 6450 6614 -1428 1905 259 126 14 chrX 75884092 75884323 -101089817 + MLT1E1 LTR MaLR 1 205 -449 1782 172 27 55 chrX 75884323 75884724 -101089416 + MLT1B LTR MaLR 1 390 0 1905 259 126 14 chrX 75884724 75885080 -101089060 + MLT1E1 LTR MaLR 205 654 0 822 254 65 14 chrX 75885093 75885384 -101088756 + L1MC4 LINE L1 7494 7799 -243 240 204 0 0 chrX 75885471 75885525 -101088615 + L1MC4 LINE L1 7989 8042 0 441 190 40 10 chrX 75885651 75885751 -101088389 + L1M4b LINE L1 5 107 -6752 744 315 70 8 chrX 75885762 75886003 -101088137 + L1M4b LINE L1 153 408 -6451 1980 211 98 36 chrX 75886125 75886209 -101087931 + L1M4b LINE L1 893 970 -5889 2057 113 0 3 chrX 75886209 75886541 -101087599 + AluSq SINE Alu 1 331 0 1980 211 98 36 chrX 75886541 75886986 -101087154 + L1M4b LINE L1 970 1456 -5403 637 253 57 2 chrX 75886986 75887374 -101086766 + L1M4b LINE L1 2277 2776 -4183 * 768 291 64 25 chrX 75887368 75887729 -101086411 + L1M4 LINE L1 1706 2182 -4775 2108 99 0 3 chrX 75887863 75888145 -101085995 - AluSx SINE Alu -31 281 1 279 333 63 36 chrX 75888448 75888559 -101085581 + MIR SINE MIR 37 150 -58 25 0 0 0 chrX 75888591 75888616 -101085524 + AT_rich Low_complexity Low_complexity 1 25 0 5747 167 27 53 chrX 75888616 75888989 -101085151 - L1PB3 LINE L1 -2 6152 5771 735 12 0 0 chrX 75888989 75889073 -101085067 + (TTTTC)n Simple_repeat Simple_repeat 2 85 0 2133 104 4 0 chrX 75889073 75889351 -101084789 - AluSc SINE Alu -28 281 3 5747 167 27 53 chrX 75889351 75891312 -101082828 - L1PB3 LINE L1 -381 5773 3883 1757 297 39 37 chrX 75891336 75892266 -101081874 - L1MEc LINE L1 -5420 976 45 22 0 0 0 chrX 75892497 75892519 -101081621 + AT_rich Low_complexity Low_complexity 1 22 0 235 232 0 18 chrX 75892719 75892775 -101081365 - MER5A DNA MER1_type -116 73 19 2113 110 0 23 chrX 75892940 75893285 -101080855 - AluSg SINE Alu 0 310 1 2318 56 0 18 chrX 75893633 75893919 -101080221 + AluY SINE Alu 1 281 -30 1277 110 0 0 chrX 75894019 75894192 -101079948 + AluSp SINE Alu 132 304 -9 3541 107 19 19 chrX 75894203 75894725 -101079415 - MER4C-int LTR ERV1 -6189 569 48 1480 145 57 39 chrX 75894769 75895052 -101079088 - MER4C LTR ERV1 0 465 178 250 250 50 20 chrX 75895258 75895358 -101078782 + LTR30 LTR ERV1 541 643 -79 493 165 33 11 chrX 75895364 75895455 -101078685 + LTR12 LTR ERV1 486 578 -136 1254 72 17 6 chrX 75895458 75895638 -101078502 - MER4C LTR ERV1 -283 182 1 3027 190 62 22 chrX 75895649 75896340 -101077800 - LTR8A LTR ERV1 -8 719 1 490 250 41 41 chrX 75896340 75896512 -101077628 - HUERS-P1 LTR ERV1 0 6263 6092 1106 169 84 37 chrX 75896606 75896879 -101077261 - HUERS-P1 LTR ERV1 -132 6199 5914 1507 184 16 25 chrX 75896901 75897222 -101076918 - HUERS-P1 LTR ERV1 -541 5790 5473 3157 89 9 9 chrX 75897225 75897673 -101076467 - LTR7 LTR ERV1 -2 448 1 1979 126 22 44 chrX 75897673 75898038 -101076102 - MER50-int LTR ERV1 -1421 5784 5428 1510 185 8 4 chrX 75898039 75898298 -101075842 - MER50 LTR ERV1 -23 711 452 315 214 0 78 chrX 75898315 75898418 -101075722 + L1PBa LINE L1 1488 1582 -5281 4617 133 25 30 chrX 75898418 75899229 -101074911 - MER11C LTR ERVK 0 1071 265 384 22 0 0 chrX 75899394 75899439 -101074701 + (TG)n Simple_repeat Simple_repeat 1 45 0 1364 256 37 58 chrX 75899611 75900095 -101074045 + MER74B LTR ERVL 75 548 -74 2375 101 56 0 chrX 75900119 75900476 -101073664 + MER51B LTR ERV1 1 377 0 24 53 0 0 chrX 75900622 75900660 -101073480 + AT_rich Low_complexity Low_complexity 1 38 0 335 323 40 16 chrX 75900726 75900850 -101073290 - L2 LINE L2 -208 3064 2938 30 27 0 0 chrX 75901449 75901486 -101072654 + AT_rich Low_complexity Low_complexity 1 37 0 1984 192 8 8 chrX 75902534 75902924 -101071216 - MLT1B LTR MaLR 0 390 1 2354 87 3 0 chrX 75903082 75903382 -101070758 + AluY SINE Alu 1 301 -10 21 36 0 0 chrX 75903494 75903522 -101070618 + AT_rich Low_complexity Low_complexity 1 28 0 270 136 0 0 chrX 75904223 75904267 -101069873 + (TAA)n Simple_repeat Simple_repeat 2 45 0 724 184 12 31 chrX 75904424 75904587 -101069553 + THE1C LTR MaLR 216 375 0 9028 157 9 40 chrX 75904592 75906218 -101067922 + THE1C-int LTR MaLR 6 1580 0 1692 168 60 30 chrX 75906218 75906582 -101067558 + THE1C LTR MaLR 1 375 0 189 74 0 0 chrX 75906719 75906746 -101067394 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 21 71 0 0 chrX 75907343 75907385 -101066755 + AT_rich Low_complexity Low_complexity 1 42 0 321 118 0 0 chrX 75908149 75908200 -101065940 + (CTA)n Simple_repeat Simple_repeat 3 53 0 403 293 94 17 chrX 75908301 75908482 -101065658 - MIR SINE MIR -5 257 63 8330 97 0 1 chrX 75908540 75909706 -101064434 - L1P LINE L1 -1151 4995 3831 6818 62 3 11 chrX 75909706 75910749 -101063391 + L1PA7 LINE L1 5114 6149 -5 2079 164 33 3 chrX 75911170 75911560 -101062580 + L1MA8 LINE L1 5889 6290 -1 1760 162 0 49 chrX 75911603 75911911 -101062229 + AluJb SINE Alu 1 293 -19 180 0 0 0 chrX 75911913 75911933 -101062207 + (TA)n Simple_repeat Simple_repeat 2 21 0 547 292 65 28 chrX 75911996 75912385 -101061755 - L1ME4a LINE L1 -254 5867 5467 473 155 0 72 chrX 75913021 75913215 -101060925 + (TA)n Simple_repeat Simple_repeat 1 180 0 2372 79 0 0 chrX 75913241 75913532 -101060608 - AluY SINE Alu -20 291 1 227 254 0 15 chrX 75913814 75913881 -101060259 - MLT1K LTR MaLR 0 588 523 2350 94 3 0 chrX 75913887 75914194 -101059946 + AluSp SINE Alu 1 308 -5 243 370 43 22 chrX 75914563 75914701 -101059439 - MLT1K LTR MaLR -304 284 144 510 189 0 0 chrX 75914837 75914927 -101059213 - L1M1 LINE L1 -7407 158 69 382 245 79 43 chrX 75914950 75915089 -101059051 + MLT1D LTR MaLR 141 284 -221 9168 208 43 21 chrX 75915096 75915657 -101058483 + L1M1 LINE L1 917 1464 -6101 2079 116 7 0 chrX 75915657 75915949 -101058191 + AluSc SINE Alu 1 294 -15 9168 208 43 21 chrX 75915949 75917285 -101056855 + L1M1 LINE L1 1464 2855 -4710 552 250 0 0 chrX 75917303 75917419 -101056721 - FLAM_C SINE Alu -27 116 1 3737 185 27 32 chrX 75917421 75918845 -101055295 + L1M1 LINE L1 2848 4262 -3303 1985 146 33 0 chrX 75918857 75918982 -101055158 + AluSx SINE Alu 1 120 -192 239 0 0 31 chrX 75918982 75919014 -101055126 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1985 146 33 0 chrX 75919014 75919189 -101054951 + AluSx SINE Alu 120 311 -1 1241 114 5 10 chrX 75919317 75919510 -101054630 - AluSx SINE Alu -120 192 1 611 250 86 32 chrX 75919510 75919576 -101054564 + L1M4 LINE L1 4085 4146 -2000 180 0 0 0 chrX 75919576 75919596 -101054544 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 611 250 86 32 chrX 75919596 75919809 -101054331 + L1M4 LINE L1 4146 4379 -1767 1065 199 7 49 chrX 75919813 75920007 -101054133 + L1MB8 LINE L1 5905 6085 -93 1098 218 95 6 chrX 75920007 75920323 -101053817 + MER2 DNA MER2_type 1 344 0 1065 199 7 49 chrX 75920323 75920414 -101053726 + L1MB8 LINE L1 6085 6178 0 1676 171 4 11 chrX 75920660 75920941 -101053199 + MER50 LTR ERV1 433 711 -23 1133 45 0 8 chrX 75921468 75921602 -101052538 + AluSq/x SINE Alu 1 133 -180 180 0 0 0 chrX 75921602 75921622 -101052518 + (A)n Simple_repeat Simple_repeat 1 20 0 506 191 86 57 chrX 75921760 75921969 -101052171 - L1MC/D LINE L1 -2320 5488 5274 21 36 0 0 chrX 75922168 75922196 -101051944 + AT_rich Low_complexity Low_complexity 1 28 0 330 288 68 36 chrX 75922196 75922474 -101051666 - L1MC/D LINE L1 -1127 5019 4733 2068 127 3 3 chrX 75922800 75923092 -101051048 + AluSg SINE Alu 1 292 -18 1696 214 55 21 chrX 75923253 75923780 -101050360 + L1M1 LINE L1 4269 4813 -2752 * 4072 158 9 4 chrX 75923772 75925111 -101049029 + L1P5 LINE L1 4451 5791 -360 238 130 0 0 chrX 75925114 75925160 -101048980 - LTR66 LTR ERVL -171 439 394 21 0 0 0 chrX 75925164 75925185 -101048955 + AT_rich Low_complexity Low_complexity 1 21 0 227 125 0 0 chrX 75925185 75925217 -101048923 - L1P5 LINE L1 -341 5813 5782 * 243 224 35 24 chrX 75925207 75925292 -101048848 - L1MC4 LINE L1 -1340 6702 6617 291 54 0 0 chrX 75925292 75925329 -101048811 + (CA)n Simple_repeat Simple_repeat 1 37 0 226 104 0 0 chrX 75925329 75925377 -101048763 - LTR66 LTR ERVL -169 441 394 1759 108 8 8 chrX 75925479 75925747 -101048393 + L1PB1 LINE L1 5881 6148 -3 2097 217 64 68 chrX 75925758 75925966 -101048174 + L1M1 LINE L1 4789 4996 -2569 1654 164 68 18 chrX 75925966 75926247 -101047893 + AluJb SINE Alu 6 300 -12 2097 217 64 68 chrX 75926247 75926823 -101047317 + L1M1 LINE L1 4996 5570 -1995 3109 179 10 16 chrX 75926923 75927544 -101046596 - L1MA4A LINE L1 -312 5991 5375 238 221 47 0 chrX 75927560 75927646 -101046494 + L1MC4 LINE L1 6614 6703 -1339 306 194 0 0 chrX 75927646 75927708 -101046432 + (TA)n Simple_repeat Simple_repeat 2 63 0 1058 201 16 12 chrX 75927708 75927957 -101046183 - L1MA4A LINE L1 -762 5384 5135 2491 203 19 19 chrX 75928025 75928498 -101045642 + MER70B LTR ERVL 4 476 -102 2168 101 24 3 chrX 75928879 75929175 -101044965 + AluSq SINE Alu 1 302 -11 26 30 0 0 chrX 75929184 75929217 -101044923 + AT_rich Low_complexity Low_complexity 1 33 0 28 29 0 0 chrX 75929293 75929328 -101044812 + AT_rich Low_complexity Low_complexity 1 35 0 2033 332 46 38 chrX 75930040 75931065 -101043075 - HERV16 LTR ERVL -1903 3093 2349 1970 141 12 97 chrX 75931065 75931245 -101042895 + MLT1B LTR MaLR 1 195 -195 2092 119 3 0 chrX 75931245 75931539 -101042601 + AluSq SINE Alu 1 295 -18 1970 141 12 97 chrX 75931539 75931783 -101042357 + MLT1B LTR MaLR 195 389 -1 2033 332 46 38 chrX 75931783 75931896 -101042244 - HERV16 LTR ERVL -2647 2349 2238 1023 96 0 0 chrX 75932027 75932163 -101041977 - MER11B LTR ERVK -1100 136 1 11306 217 29 31 chrX 75932165 75933128 -101041012 + L1PB3 LINE L1 1 965 -5246 1055 199 6 63 chrX 75933128 75933444 -101040696 - AluSx SINE Alu -4 298 1 11306 217 29 31 chrX 75933444 75938678 -101035462 + L1PB3 LINE L1 965 6209 -2 2441 167 31 60 chrX 75938681 75939130 -101035010 - MER4-int LTR ERV1 -281 6317 5891 294 29 0 0 chrX 75939130 75939165 -101034975 + (TC)n Simple_repeat Simple_repeat 1 35 0 2441 167 31 60 chrX 75939165 75939367 -101034773 - MER4-int LTR ERV1 -707 5891 5685 1816 122 7 0 chrX 75939370 75939736 -101034404 + L1PBa LINE L1 1072 1588 -5275 549 307 46 39 chrX 75939769 75940027 -101034113 + L1MB7 LINE L1 981 1311 -6178 * 3163 243 31 29 chrX 75940025 75940730 -101033410 + L1MB7 LINE L1 2991 3693 -3872 2562 32 13 0 chrX 75940730 75941041 -101033099 + L1PA4 LINE L1 5838 6152 -3 3163 243 31 29 chrX 75941041 75941716 -101032424 + L1MB7 LINE L1 3693 4384 -3181 1961 189 87 5 chrX 75941716 75942108 -101032032 - MSTB LTR MaLR 0 426 3 3163 243 31 29 chrX 75942108 75942370 -101031770 + L1MB7 LINE L1 4384 4644 -2921 * 9514 189 50 18 chrX 75942348 75944898 -101029242 + L1MA8 LINE L1 4441 7065 -645 1688 243 10 10 chrX 75944898 75945285 -101028855 - MSTD LTR MaLR 0 396 10 3073 174 30 5 chrX 75945285 75945927 -101028213 + L1MA8 LINE L1 5633 6290 -1 3049 229 29 38 chrX 75946007 75947313 -101026827 + L1MB7 LINE L1 6145 7430 -173 2290 81 3 13 chrX 75947313 75947623 -101026517 - AluSc SINE Alu -1 308 2 3049 229 29 38 chrX 75947623 75947774 -101026366 + L1MB7 LINE L1 7430 7581 -22 379 43 0 0 chrX 75948231 75948277 -101025863 + MSTB LTR MaLR 3 48 -378 537 165 19 0 chrX 75948277 75948380 -101025760 + MSTB-int LTR MaLR 1547 1651 0 1073 209 30 0 chrX 75948381 75948582 -101025558 + MSTB LTR MaLR 2 208 -218 249 347 47 36 chrX 75948726 75948919 -101025221 + MIR SINE MIR 5 199 -63 1312 332 49 40 chrX 75949396 75950927 -101023213 + L1PA15-16 LINE L1 -641 784 -5419 3156 244 40 25 chrX 75951370 75952338 -101021802 + L1PA15-16 LINE L1 1 980 -5224 * 6331 215 27 4 chrX 75952327 75953592 -101020548 - MSTB-int LTR MaLR -125 1526 233 3030 217 83 8 chrX 75953585 75954235 -101019905 - MSTB-int LTR MaLR -313 1267 569 * 849 109 8 0 chrX 75954217 75954345 -101019795 - MSTB-int LTR MaLR -1522 129 1 * 1833 108 26 125 chrX 75954355 75954771 -101019369 - THE1C LTR MaLR 0 375 1 770 86 0 43 chrX 75954771 75954877 -101019263 - MSTB LTR MaLR -9 419 317 780 88 18 0 chrX 75954882 75954995 -101019145 - MSTA LTR MaLR -313 115 1 1467 177 72 20 chrX 75956659 75957004 -101017136 - MER47A DNA MER2_type -1 365 3 1132 341 81 23 chrX 75957213 75957332 -101016808 + L1M3a LINE L1 816 927 -5842 3187 157 11 61 chrX 75957332 75957976 -101016164 + LTR9 LTR ERV1 1 612 0 1132 341 81 23 chrX 75957976 75958545 -101015595 + L1M3a LINE L1 927 1544 -5225 * 2418 236 19 25 chrX 75958538 75959259 -101014881 + L1M3a LINE L1 1962 2678 -4171 302 240 0 0 chrX 75959249 75959324 -101014816 + L1MA10 LINE L1 6258 6332 -2 * 28 29 0 0 chrX 75961215 75961250 -101012890 + AT_rich Low_complexity Low_complexity 1 35 0 396 82 55 0 chrX 75962099 75962172 -101011968 + GA-rich Low_complexity Low_complexity 2 78 0 983 93 11 22 chrX 75962172 75962354 -101011786 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 21 89 0 0 chrX 75963136 75963192 -101010948 + AT_rich Low_complexity Low_complexity 1 56 0 1359 268 95 25 chrX 75963668 75964112 -101010028 + MER21B LTR ERV1 329 803 -60 4364 261 28 38 chrX 75964158 75964338 -101009802 + MER21B-int LTR ERV1 26 206 -3985 2078 131 0 0 chrX 75964338 75964629 -101009511 + AluSq SINE Alu 1 291 -22 4364 261 28 38 chrX 75964629 75965134 -101009006 + MER21B-int LTR ERV1 206 715 -3476 1655 205 58 0 chrX 75965134 75965480 -101008660 + MER47A DNA MER2_type 1 366 0 4364 261 28 38 chrX 75965480 75965576 -101008564 + MER21B-int LTR ERV1 715 810 -3381 1665 216 31 0 chrX 75965576 75965927 -101008213 - MLT1A1 LTR MaLR -1 364 3 4364 261 28 38 chrX 75965927 75966406 -101007734 + MER21B-int LTR ERV1 810 1275 -2916 1299 243 56 3 chrX 75966406 75966710 -101007430 + MLT1A1 LTR MaLR 1 320 -45 6439 268 58 44 chrX 75966710 75971052 -101003088 + L1PA15-16 LINE L1 2 4466 -2383 214 277 0 0 chrX 75971769 75971816 -101002324 + CT-rich Low_complexity Low_complexity 3 49 0 608 155 0 26 chrX 75972896 75973012 -101001128 + L1PB1 LINE L1 6037 6149 -2 25 0 0 0 chrX 75973450 75973475 -101000665 + AT_rich Low_complexity Low_complexity 1 25 0 2956 107 0 0 chrX 75975047 75975467 -100998673 - L1P LINE L1 -4263 1883 1464 2903 249 27 4 chrX 75975467 75976287 -100997853 + L1PA15-16 LINE L1 4959 5797 -1052 1160 139 5 0 chrX 75976394 75976595 -100997545 + L1MA3 LINE L1 4488 4689 -1457 4892 143 11 14 chrX 75976595 75977452 -100996688 + L1MA3 LINE L1 5446 6303 -2 28 0 0 0 chrX 75977453 75977481 -100996659 + AT_rich Low_complexity Low_complexity 1 28 0 351 202 39 108 chrX 75977512 75977641 -100996499 - MLT1D LTR MaLR -399 106 1 447 265 104 14 chrX 76078703 76078982 -100895158 - L1M4 LINE L1 -1661 4485 4182 618 264 68 0 chrX 76079012 76079232 -100894908 - L1M4 LINE L1 -2029 4117 3883 868 233 0 0 chrX 76079247 76079410 -100894730 - MLT1A1 LTR MaLR -4 361 199 240 191 0 21 chrX 76079408 76079455 -100894685 - MLT1A1 LTR MaLR -328 46 1 * 805 274 31 0 chrX 76079508 76079763 -100894377 - L1M4 LINE L1 -2278 3868 3606 2172 247 55 14 chrX 76079775 76080564 -100893576 + L1M4 LINE L1 2584 3404 -2742 1038 248 38 35 chrX 76080568 76080886 -100893254 - MLT1C LTR MaLR -90 377 59 324 285 15 15 chrX 76080886 76081016 -100893124 - L1MEc LINE L1 -4706 1690 1561 3404 43 0 0 chrX 76081027 76081466 -100892674 + L1PA5 LINE L1 5721 6159 0 340 269 21 11 chrX 76081587 76081680 -100892460 + Zaphod DNA AcHobo 3937 4030 -1 465 210 266 42 chrX 76084049 76084263 -100889877 + MIR SINE MIR 1 262 0 2880 155 17 4 chrX 76084270 76084806 -100889334 - L1MA2 LINE L1 0 7723 7181 2278 182 34 2 chrX 76084806 76085213 -100888927 - MSTA LTR MaLR -1 427 8 280 136 0 0 chrX 76085219 76085263 -100888877 - L1MA2 LINE L1 -534 7187 7144 13656 174 47 51 chrX 76085320 76090397 -100883743 - L1MA2 LINE L1 -578 7145 2088 * 19673 170 7 7 chrX 76090396 76095300 -100878840 - L1PA11 LINE L1 0 6489 1595 9210 227 23 11 chrX 76095289 76095727 -100878413 - L1MA2 LINE L1 -5657 1908 1477 * 216 0 0 0 chrX 76095727 76095751 -100878389 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 9210 227 23 11 chrX 76095751 76097197 -100876943 - L1MA2 LINE L1 -6088 1477 1 245 336 64 8 chrX 76097219 76097344 -100876796 + MIR SINE MIR 18 149 -113 312 140 0 0 chrX 76098042 76098092 -100876048 - AluSx SINE Alu -2 299 250 1595 110 0 0 chrX 76098094 76098303 -100875837 - AluSx SINE Alu -103 209 1 2090 117 7 0 chrX 76098557 76098859 -100875281 + AluSq SINE Alu 1 304 0 868 276 73 9 chrX 76099276 76099617 -100874523 - L1MB7 LINE L1 0 6184 5822 595 197 7 14 chrX 76099624 76099766 -100874374 - L1MB4 LINE L1 -1 6179 6039 643 244 21 17 chrX 76099780 76100018 -100874122 - L1M4 LINE L1 -2879 3267 3029 4213 199 12 23 chrX 76100029 76100944 -100873196 - L1MA5 LINE L1 -9 6291 5387 8550 213 40 37 chrX 76100956 76101898 -100872242 - L1MA4 LINE L1 -5 6477 5539 2016 106 34 7 chrX 76101898 76102191 -100871949 - AluSc SINE Alu -8 301 1 8550 213 40 37 chrX 76102191 76103527 -100870613 - L1MA4 LINE L1 -943 5539 4208 1953 149 16 7 chrX 76103527 76103836 -100870304 + AluSx SINE Alu 1 312 0 8550 213 40 37 chrX 76103836 76106381 -100867759 - L1MA4 LINE L1 -2274 4208 1660 2334 110 0 0 chrX 76106381 76106690 -100867450 + AluSg1 SINE Alu 1 309 0 8550 213 40 37 chrX 76106690 76108353 -100865787 - L1MA4 LINE L1 -4822 1660 3 2265 211 56 3 chrX 76108355 76108961 -100865179 - L1 LINE L1 -746 5400 4763 3351 200 15 52 chrX 76109097 76109479 -100864661 - L1MA4 LINE L1 -308 5992 5598 1524 197 21 7 chrX 76109479 76109763 -100864377 - AluJb SINE Alu -19 293 6 3351 200 15 52 chrX 76109763 76110083 -100864057 - L1MA4 LINE L1 -702 5598 5268 1594 109 0 0 chrX 76110083 76110293 -100863847 - AluSq SINE Alu -103 210 1 3351 200 15 52 chrX 76110293 76110877 -100863263 - L1MA4 LINE L1 -1032 5268 4746 213 39 0 0 chrX 76110877 76110903 -100863237 + (TA)n Simple_repeat Simple_repeat 2 27 0 6687 72 7 0 chrX 76110908 76112334 -100861806 - L1PA7 LINE L1 -16 6138 4705 312 378 81 18 chrX 76112338 76112560 -100861580 - L1M4 LINE L1 -6012 530 295 4252 188 49 13 chrX 76112562 76113424 -100860716 + MER4D LTR ERV1 3 895 -8 373 196 85 72 chrX 76113509 76113662 -100860478 - L1M4 LINE L1 -6327 215 61 1151 303 60 11 chrX 76113743 76114374 -100859766 - L1M4c LINE L1 -4726 2233 1572 2949 142 66 6 chrX 76114380 76114959 -100859181 - MER4B LTR ERV1 0 779 1 662 234 79 36 chrX 76114960 76115212 -100858928 - L1M4c LINE L1 -5282 1577 1315 1783 123 13 23 chrX 76115247 76115555 -100858585 - MER61B-int LTR ERV1 -4507 710 406 308 147 120 13 chrX 76115557 76115632 -100858508 - MER61B-int LTR ERV1 -6336 755 673 728 219 16 49 chrX 76115653 76115836 -100858304 - MER61B-int LTR ERV1 -5039 178 2 1578 156 26 31 chrX 76115836 76116173 -100857967 - MER61B LTR ERV1 0 425 1 591 322 40 6 chrX 76116275 76116449 -100857691 - L1M4c LINE L1 -6435 424 245 4265 216 27 12 chrX 76116507 76117512 -100856628 + L1P LINE L1 3952 4971 -1175 2253 263 15 27 chrX 76117509 76118181 -100855959 + L1PB2 LINE L1 859 1522 -5341 * 9153 221 16 11 chrX 76118180 76120184 -100853956 + L1PB2 LINE L1 3297 5317 -1545 2463 80 0 3 chrX 76120184 76120496 -100853644 + AluY SINE Alu 1 311 0 9153 221 16 11 chrX 76120496 76120794 -100853346 + L1PB2 LINE L1 5317 5612 -1250 1946 160 129 11 chrX 76120797 76121178 -100852962 + MSTA LTR MaLR 1 426 -2 8771 152 23 35 chrX 76121182 76122778 -100851362 + MSTA-int LTR MaLR 3 1580 0 1868 157 128 11 chrX 76122779 76123161 -100850979 + MSTA LTR MaLR 2 428 0 3976 154 25 1 chrX 76123169 76124302 -100849838 + L1PB2 LINE L1 5619 6865 -2 2125 118 0 0 chrX 76124408 76124697 -100849443 + AluSc SINE Alu 1 289 -20 358 281 79 22 chrX 76124751 76124890 -100849250 + L2 LINE L2 3158 3304 -9 207 0 0 0 chrX 76125199 76125222 -100848918 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4391 201 28 12 chrX 76125222 76126867 -100847273 - L1PA16 LINE L1 -24 6142 4476 2053 216 11 0 chrX 76126866 76127328 -100846812 + L1PA16 LINE L1 4018 4484 -1662 * 2772 206 64 38 chrX 76127643 76128404 -100845736 - L1MC3 LINE L1 -8 7777 6997 4449 140 47 16 chrX 76128700 76129039 -100845101 - L1PB3 LINE L1 0 6154 5827 351 44 0 0 chrX 76129039 76129084 -100845056 + (TG)n Simple_repeat Simple_repeat 2 46 0 4449 140 47 16 chrX 76129084 76129539 -100844601 - L1PB3 LINE L1 -327 5827 5336 431 180 0 0 chrX 76129498 76129587 -100844553 + L1MCa LINE L1 1937 2025 -4401 * 21 36 0 0 chrX 76129593 76129621 -100844519 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 76129727 76129751 -100844389 + AT_rich Low_complexity Low_complexity 1 24 0 2341 74 0 0 chrX 76130123 76130453 -100843687 - AluY SINE Alu 0 330 1 10085 217 112 26 chrX 76130455 76131274 -100842866 - L1PA15 LINE L1 -5 6811 6064 2148 108 14 0 chrX 76131274 76131571 -100842569 + AluY SINE Alu 2 302 -9 10085 217 112 26 chrX 76131571 76132639 -100841501 - L1PA15 LINE L1 -752 6064 5089 2199 123 0 0 chrX 76132639 76132932 -100841208 - AluSx SINE Alu -19 293 1 10085 217 112 26 chrX 76132932 76135286 -100838854 - L1PA15 LINE L1 -1727 5089 2172 2385 260 10 17 chrX 76135287 76135863 -100838277 - L1PA15 LINE L1 -4985 1802 1231 263 350 15 7 chrX 76135887 76136024 -100838116 - L1PA12 LINE L1 -5262 2319 2182 508 299 52 54 chrX 76136989 76137377 -100836763 - L1PA12 LINE L1 -7188 393 7 2655 52 0 0 chrX 76138426 76138735 -100835405 - AluY SINE Alu -2 309 1 3346 238 61 7 chrX 76139086 76140208 -100833932 + L1PBb LINE L1 782 2045 -4158 5793 213 15 9 chrX 76140224 76142536 -100831604 - L1PA16 LINE L1 -9 6157 3840 2473 122 0 3 chrX 76142554 76142923 -100831217 - L1PB1 LINE L1 -3 6148 5781 258 141 31 16 chrX 76142923 76142987 -100831153 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 * 3451 115 14 40 chrX 76142984 76143679 -100830461 - L1PB1 LINE L1 -361 5790 5107 7963 199 35 14 chrX 76143681 76145510 -100828630 + L1 LINE L1 3100 4967 -1179 989 232 36 0 chrX 76145518 76145738 -100828402 + L1PBb LINE L1 2031 2258 -3945 * 3142 225 19 14 chrX 76145727 76146536 -100827604 - L1PB1 LINE L1 -1568 4578 3766 1194 261 23 51 chrX 76146539 76147067 -100827073 - L1PB1 LINE L1 -3186 2960 2448 4664 157 27 27 chrX 76147068 76147995 -100826145 + L1PA16 LINE L1 5224 6140 -26 528 273 11 71 chrX 76148183 76148366 -100825774 + MIR SINE MIR 81 252 -10 2449 65 0 3 chrX 76148388 76148695 -100825445 - AluY SINE Alu -5 306 1 262 343 87 19 chrX 76149142 76149349 -100824791 + MIR SINE MIR 31 251 -11 962 220 6 0 chrX 76149950 76150132 -100824008 + MER5A DNA MER1_type 1 183 -6 351 0 0 0 chrX 76150164 76150173 -100823967 + (TG)n Simple_repeat Simple_repeat 1 48 0 351 0 0 0 chrX 76150173 76150212 -100823928 + (TG)n Simple_repeat Simple_repeat 1 39 0 248 213 200 0 chrX 76150390 76150470 -100823670 - L1ME3A LINE L1 -5 6165 6070 6421 201 29 16 chrX 76150995 76152944 -100821196 - HERVL74 LTR ERVL -2389 3296 1291 661 191 25 44 chrX 76153046 76153251 -100820889 - HERVL74 LTR ERVL -2345 1211 1020 222 114 45 23 chrX 76153265 76153339 -100820801 + CT-rich Low_complexity Low_complexity 1 75 0 695 258 45 17 chrX 76153343 76153521 -100820619 - HERVL74 LTR ERVL -2594 962 780 270 0 0 0 chrX 76155367 76155397 -100818743 + (TC)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chrX 76155397 76155419 -100818721 + (TG)n Simple_repeat Simple_repeat 2 23 0 438 244 81 52 chrX 76155796 76155968 -100818172 + MER5B DNA MER1_type 1 177 -1 296 338 42 38 chrX 76156078 76156291 -100817849 - MIR SINE MIR -1 261 48 303 71 0 0 chrX 76157410 76157452 -100816688 + (CA)n Simple_repeat Simple_repeat 2 43 0 517 248 83 0 chrX 76157480 76157601 -100816539 - MER63 DNA MER1_type -274 786 656 1367 257 77 26 chrX 76158433 76158474 -100815666 - MLT2B1 LTR ERVL 0 520 483 554 41 14 0 chrX 76158474 76158547 -100815593 + (TG)n Simple_repeat Simple_repeat 1 74 0 1367 257 77 26 chrX 76158547 76159000 -100815140 - MLT2B1 LTR ERVL -37 483 1 29 47 0 0 chrX 76159545 76159588 -100814552 + AT_rich Low_complexity Low_complexity 1 43 0 566 294 55 0 chrX 76160698 76160861 -100813279 - MER5B DNA MER1_type 0 178 7 308 279 70 0 chrX 76161690 76161776 -100812364 + MER81 DNA DNA 1 92 -22 413 177 24 81 chrX 76161850 76161974 -100812166 - L1MC3 LINE L1 -1 7784 7668 6229 190 101 95 chrX 76161977 76162593 -100811547 + L1MC1 LINE L1 244 854 -5753 201 74 0 0 chrX 76162593 76162620 -100811520 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6229 190 101 95 chrX 76162620 76162712 -100811428 + L1MC1 LINE L1 854 944 -5663 1795 161 68 8 chrX 76162712 76163066 -100811074 - THE1C LTR MaLR 0 375 1 6229 190 101 95 chrX 76163066 76164677 -100809463 + L1MC1 LINE L1 944 2647 -3960 2747 224 51 87 chrX 76164716 76166775 -100807365 + L1MC1 LINE L1 4636 6613 0 656 297 29 4 chrX 76166779 76167052 -100807088 + L1MCa LINE L1 2596 2875 -3551 1896 322 38 13 chrX 76167222 76167909 -100806231 + L1PA15 LINE L1 1 704 -6083 4522 240 28 9 chrX 76167972 76169541 -100804599 + L1PA15 LINE L1 1259 2865 -3932 2978 193 9 28 chrX 76169545 76170108 -100804032 + L1PA15 LINE L1 6178 6729 -87 2528 50 0 0 chrX 76170108 76170410 -100803730 + AluY SINE Alu 1 302 -9 2978 193 9 28 chrX 76170410 76170494 -100803646 + L1PA15 LINE L1 6729 6813 -3 1523 234 86 57 chrX 76170525 76170876 -100803264 - L1M4b LINE L1 -5259 1600 1222 2053 243 79 33 chrX 76170876 76171534 -100802606 + MER76 LTR ERV 1 688 0 1523 234 86 57 chrX 76171534 76171797 -100802343 - L1M4b LINE L1 -5637 1222 968 21 36 0 0 chrX 76171831 76171859 -100802281 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 76172689 76172721 -100801419 + AT_rich Low_complexity Low_complexity 1 32 0 34 24 0 0 chrX 76172926 76172967 -100801173 + AT_rich Low_complexity Low_complexity 1 41 0 27 62 0 0 chrX 76173142 76173190 -100800950 + AT_rich Low_complexity Low_complexity 1 48 0 3761 247 39 31 chrX 76173784 76176001 -100798139 - L1MB3 LINE L1 -1 6182 3946 2454 300 18 50 chrX 76176009 76176916 -100797224 + L1PA13 LINE L1 1 878 -5909 5097 255 23 17 chrX 76176971 76178498 -100795642 + L1PA13 LINE L1 1269 2784 -4013 1918 234 12 2 chrX 76178498 76178922 -100795218 - MSTA LTR MaLR 0 428 1 7116 228 5 28 chrX 76178922 76180612 -100793528 - MSTA-int LTR MaLR 0 1651 1 1943 196 41 5 chrX 76180612 76181025 -100793115 - MSTA LTR MaLR 0 428 1 5097 255 23 17 chrX 76181025 76182133 -100792007 + L1PA13 LINE L1 2783 3943 -2854 25 31 0 0 chrX 76182349 76182381 -100791759 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chrX 76183557 76183578 -100790562 + AT_rich Low_complexity Low_complexity 1 21 0 2247 108 3 0 chrX 76183857 76184162 -100789978 + AluSp SINE Alu 1 306 -7 1870 130 39 62 chrX 76184336 76184720 -100789420 + THE1C LTR MaLR 1 375 0 2975 189 7 0 chrX 76185521 76186075 -100788065 + L1PA16 LINE L1 5601 6158 -8 254 337 71 20 chrX 76186236 76186432 -100787708 + MLT1K LTR MaLR 367 572 -16 381 280 102 60 chrX 76186541 76186884 -100787256 + L1ME4a LINE L1 5518 5867 -254 762 192 28 16 chrX 76187213 76187433 -100786707 + AluJo SINE Alu 2 253 -59 25 83 0 0 chrX 76187787 76187847 -100786293 + AT_rich Low_complexity Low_complexity 1 60 0 362 332 44 48 chrX 76188373 76188602 -100785538 - MIR SINE MIR -13 249 22 1222 236 180 71 chrX 76188899 76189489 -100784651 + MLT1E1 LTR MaLR 1 654 0 23 33 0 0 chrX 76190650 76190680 -100783460 + AT_rich Low_complexity Low_complexity 1 30 0 2122 35 0 0 chrX 76191058 76191315 -100782825 + L1PA4 LINE L1 5894 6150 -5 496 222 141 7 chrX 76191610 76191745 -100782395 + L1ME1 LINE L1 5702 5854 -312 354 345 35 30 chrX 76191879 76192076 -100782064 - L1MC/D LINE L1 -2066 5742 5545 488 319 133 64 chrX 76192144 76192856 -100781284 - L2 LINE L2 -60 3253 2476 2959 158 17 31 chrX 76192941 76193528 -100780612 - L1MC1 LINE L1 -1 6332 5754 227 313 15 61 chrX 76193598 76193729 -100780411 + MIR SINE MIR 136 260 -2 335 192 13 0 chrX 76193729 76193807 -100780333 + (TAG)n Simple_repeat Simple_repeat 3 81 0 540 231 66 0 chrX 76194238 76194359 -100779781 - MLT1A1 LTR MaLR -2 363 235 239 154 58 0 chrX 76194372 76194424 -100779716 - L1 LINE L1 -3149 2997 2943 438 248 80 5 chrX 76194478 76194652 -100779488 - MLT1A1 LTR MaLR -169 196 1 813 221 69 38 chrX 76194981 76195270 -100778870 - L1MB8 LINE L1 -2 6176 5879 887 155 30 0 chrX 76195411 76195579 -100778561 - L1MA8 LINE L1 -4 6287 6115 2120 187 23 2 chrX 76195590 76196017 -100778123 + L1MA8 LINE L1 5662 6097 -194 852 87 17 0 chrX 76196025 76196140 -100778000 - AluSg/x SINE Alu -20 290 174 24 32 0 0 chrX 76196848 76196879 -100777261 + AT_rich Low_complexity Low_complexity 1 31 0 3658 235 22 22 chrX 76196939 76197043 -100777097 - L1 LINE L1 -3023 4542 4439 185 0 40 0 chrX 76197043 76197068 -100777072 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 3658 235 22 22 chrX 76197068 76198408 -100775732 - L1 LINE L1 -3125 4440 3099 1399 256 10 0 chrX 76198440 76198823 -100775317 - L1 LINE L1 -4563 3002 2616 * 6171 248 17 42 chrX 76198817 76200430 -100773710 + L1 LINE L1 2843 4495 -1651 2355 82 0 19 chrX 76200430 76200747 -100773393 - AluY SINE Alu 0 311 1 6171 248 17 42 chrX 76200747 76201063 -100773077 + L1 LINE L1 4495 4817 -1329 2489 108 8 21 chrX 76201063 76201443 -100772697 - THE1C LTR MaLR 0 375 1 6171 248 17 42 chrX 76201443 76201685 -100772455 + L1 LINE L1 4817 4962 -1184 4212 178 31 18 chrX 76201685 76202097 -100772043 + L1PA16 LINE L1 5116 5521 -645 4546 62 162 65 chrX 76202097 76202850 -100771290 - LTR12 LTR ERV1 0 826 1 4212 178 31 18 chrX 76202850 76203470 -100770670 + L1PA16 LINE L1 5521 6160 -6 1480 236 39 37 chrX 76203470 76203902 -100770238 + L1MA4 LINE L1 4583 5015 -1131 6171 248 17 42 chrX 76203470 76203498 -100770642 + L1 LINE L1 4962 4989 -1157 958 136 20 0 chrX 76203902 76204072 -100770068 + AluSg/x SINE Alu 134 306 0 1480 201 8 24 chrX 76204073 76204643 -100769497 + L1MA4 LINE L1 5006 5565 -735 * 12711 101 9 44 chrX 76204638 76205040 -100769100 + L1PA7 LINE L1 11 425 -6036 183 42 0 0 chrX 76205040 76205064 -100769076 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 12711 101 9 44 chrX 76205064 76206923 -100767217 + L1PA7 LINE L1 425 2258 -4203 4746 75 2 0 chrX 76206921 76207548 -100766592 + L1PA7 LINE L1 4383 5010 -1451 * 2324 81 3 0 chrX 76207548 76207860 -100766280 + L1PA7 LINE L1 6148 6468 -1 938 181 6 11 chrX 76207889 76208056 -100766084 + L1MA4 LINE L1 5618 5785 -515 1015 137 6 0 chrX 76208056 76208235 -100765905 + L1MA4 LINE L1 6113 6295 -5 938 181 6 11 chrX 76208235 76208249 -100765891 + L1MA4 LINE L1 5785 5798 -502 265 329 0 0 chrX 76208592 76208671 -100765469 + HERVL68 LTR ERVL 2937 3015 -22 725 316 155 24 chrX 76208672 76209168 -100764972 + MER68 LTR ERV1 2 562 0 16450 176 11 24 chrX 76209228 76211801 -100762339 - L1P3 LINE L1 -2213 4248 1703 2379 62 0 13 chrX 76211801 76212105 -100762035 - AluY SINE Alu -11 300 1 16450 176 11 24 chrX 76212105 76212961 -100761179 - L1P3 LINE L1 -4758 1703 837 7374 132 16 9 chrX 76212961 76214916 -100759224 + L1PA8A LINE L1 4167 6131 0 3546 236 47 35 chrX 76214977 76216352 -100757788 + L1MD2 LINE L1 4964 6357 -2 1252 248 36 8 chrX 76216347 76216706 -100757434 + L1ME LINE L1 5315 5683 -483 * 23 33 0 0 chrX 76217302 76217332 -100756808 + AT_rich Low_complexity Low_complexity 1 30 0 2750 130 22 38 chrX 76217338 76217844 -100756296 + L1PA14 LINE L1 5660 6157 -4 30 27 0 0 chrX 76217844 76217881 -100756259 + AT_rich Low_complexity Low_complexity 1 37 0 5735 109 10 10 chrX 76217943 76219964 -100754176 - L1PA12 LINE L1 -5 6163 4154 235 194 15 15 chrX 76219965 76220032 -100754108 + (TA)n Simple_repeat Simple_repeat 1 67 0 1146 157 19 0 chrX 76220072 76220288 -100753852 - L1MA5 LINE L1 0 6300 6081 30 59 0 0 chrX 76220383 76220434 -100753706 + AT_rich Low_complexity Low_complexity 1 51 0 459 317 128 19 chrX 76220697 76220958 -100753182 - L1M4 LINE L1 -2747 3399 3168 2242 99 0 3 chrX 76220958 76221260 -100752880 - AluY SINE Alu -8 303 3 459 317 128 19 chrX 76221260 76221835 -100752305 - L1M4 LINE L1 -2978 3168 2472 394 257 107 7 chrX 76221851 76221991 -100752149 + MER63 DNA MER1_type 6 785 -51 330 285 67 84 chrX 76222046 76222269 -100751871 - L1M4 LINE L1 -3685 2461 2245 1689 184 0 0 chrX 76222269 76222563 -100751577 + AluSx SINE Alu 7 300 -12 330 285 67 84 chrX 76222563 76222697 -100751443 - L1M4 LINE L1 -3901 2245 2110 2192 95 7 0 chrX 76223414 76223710 -100750430 + AluSp SINE Alu 1 298 -15 266 0 29 0 chrX 76223717 76223751 -100750389 + (CAA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chrX 76223766 76223789 -100750351 + AT_rich Low_complexity Low_complexity 1 23 0 406 314 26 6 chrX 76225417 76225573 -100748567 + L2 LINE L2 1904 2062 -1252 3238 78 34 0 chrX 76225574 76226010 -100748130 - MER11B LTR ERVK -785 451 1 3247 56 2 0 chrX 76226010 76226418 -100747722 + L1PA8 LINE L1 5507 5915 -257 52 62 0 9 chrX 76226762 76226825 -100747315 + AT_rich Low_complexity Low_complexity 1 64 -47 1388 151 14 14 chrX 76226825 76227104 -100747036 - L1MA2 LINE L1 -1 6303 6025 52 62 0 9 chrX 76227104 76227152 -100746988 + AT_rich Low_complexity Low_complexity 64 111 0 2204 118 0 0 chrX 76227203 76227507 -100746633 - AluSx SINE Alu -8 304 1 588 248 92 79 chrX 76227717 76228108 -100746032 + L1MC5 LINE L1 7157 7552 -409 424 181 16 94 chrX 76228143 76228206 -100745934 - L1M4 LINE L1 -1112 5034 4984 207 0 0 0 chrX 76228206 76228229 -100745911 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 424 181 16 94 chrX 76228229 76228292 -100745848 - L1M4 LINE L1 -1162 4984 4918 271 83 0 0 chrX 76228292 76228328 -100745812 + MLT2D LTR ERVL 373 408 -6 977 338 58 26 chrX 76228680 76229248 -100744892 - HERVL40 LTR ERVL -3913 1617 1032 1124 299 15 52 chrX 76229531 76230070 -100744070 - LTR40a LTR ERVL 0 519 1 404 292 84 29 chrX 76230078 76230352 -100743788 - L1MEc LINE L1 -3329 2886 2598 * 5448 199 17 22 chrX 76230350 76231278 -100742862 - L1PA16 LINE L1 0 6869 5938 1946 220 41 54 chrX 76231278 76231838 -100742302 - MLT2B3 LTR ERVL -1 553 1 5448 199 17 22 chrX 76231838 76233161 -100740979 - L1PA16 LINE L1 -931 5938 4632 15911 196 67 21 chrX 76233173 76236018 -100738122 + L1MA1 LINE L1 12 2724 -4841 2365 176 12 12 chrX 76236018 76236443 -100737697 - MSTA LTR MaLR -2 426 2 7838 205 33 7 chrX 76236444 76238052 -100736088 - MSTA-int LTR MaLR 0 1651 2 2596 153 7 5 chrX 76238054 76238480 -100735660 - MSTA LTR MaLR 0 428 2 15911 196 67 21 chrX 76238480 76240593 -100733547 + L1MA1 LINE L1 2724 5204 -2361 6062 161 15 16 chrX 76240634 76242236 -100731904 + L1MA1 LINE L1 6121 7721 0 24 0 0 0 chrX 76242241 76242265 -100731875 + AT_rich Low_complexity Low_complexity 1 24 0 10871 226 29 21 chrX 76242326 76244952 -100729188 - L1PA16 LINE L1 -2230 4619 2016 2188 117 3 0 chrX 76244952 76245261 -100728879 + AluSx SINE Alu 1 310 -2 10871 226 29 21 chrX 76245261 76245302 -100728838 - L1PA16 LINE L1 -4833 2016 1977 315 0 0 0 chrX 76245302 76245337 -100728803 + (TG)n Simple_repeat Simple_repeat 2 36 0 10871 226 29 21 chrX 76245337 76246934 -100727206 - L1PA16 LINE L1 -4872 1977 709 398 307 32 0 chrX 76246940 76247129 -100727011 - L1MEc LINE L1 -3624 2591 2397 421 191 67 0 chrX 76247161 76247250 -100726890 - 7SLRNA srpRNA srpRNA -17 303 209 525 288 86 42 chrX 76247250 76247521 -100726619 - L1MEc LINE L1 -3995 2401 2143 2311 138 22 0 chrX 76247521 76247877 -100726263 - THE1B LTR MaLR 0 364 1 525 288 86 42 chrX 76247877 76248247 -100725893 - L1MEc LINE L1 -4253 2143 1732 346 331 14 7 chrX 76248247 76248386 -100725754 - MLT1B LTR MaLR 0 390 251 808 188 0 36 chrX 76248862 76249027 -100725113 - AluJo SINE Alu -140 172 14 6677 226 32 30 chrX 76249037 76249292 -100724848 - MSTB-int LTR MaLR -71 1580 1327 2196 100 7 3 chrX 76249292 76249592 -100724548 - AluSc SINE Alu -8 301 1 6677 226 32 30 chrX 76249592 76250909 -100723231 - MSTB-int LTR MaLR -324 1327 5 1846 183 79 19 chrX 76250913 76251291 -100722849 - MSTB LTR MaLR 0 426 26 310 150 33 0 chrX 76251357 76251417 -100722723 - HSMAR2 DNA Mariner -1239 63 2 2879 3 0 0 chrX 76253515 76253825 -100720315 + AluYa5 SINE Alu 1 310 -1 248 143 48 24 chrX 76254506 76254590 -100719550 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 270 116 70 139 chrX 76255540 76255626 -100718514 - MER53 DNA DNA 0 189 110 2117 108 14 0 chrX 76255628 76255924 -100718216 + AluSg SINE Alu 1 300 -10 4209 109 124 135 chrX 76255926 76257330 -100716810 - pTR5 LTR ERV1 0 2438 375 380 150 62 0 chrX 76257343 76257423 -100716717 + MER53 DNA DNA 105 189 0 200 191 29 15 chrX 76258739 76258807 -100715333 + (TA)n Simple_repeat Simple_repeat 1 69 0 243 0 0 0 chrX 76259233 76259260 -100714880 + (TG)n Simple_repeat Simple_repeat 2 28 0 418 88 0 29 chrX 76259289 76259357 -100714783 - L1MA8 LINE L1 -111 6180 6115 1581 41 0 0 chrX 76259369 76259563 -100714577 - L1PA4 LINE L1 -3 6152 5959 12659 85 12 1 chrX 76260317 76262096 -100712044 - L1P LINE L1 -1797 4349 2551 2065 125 0 0 chrX 76262949 76263284 -100710856 - AluSx SINE Alu 0 335 1 180 300 100 29 chrX 76265725 76265795 -100708345 - MIR SINE MIR -18 244 170 24 32 0 0 chrX 76266184 76266215 -100707925 + AT_rich Low_complexity Low_complexity 1 31 0 2134 111 0 10 chrX 76266747 76267044 -100707096 - AluSx SINE Alu -18 294 1 25 65 0 0 chrX 76267142 76267188 -100706952 + AT_rich Low_complexity Low_complexity 1 46 0 2125 224 20 30 chrX 76268415 76268906 -100705234 + LTR40a LTR ERVL 34 519 0 459 209 0 0 chrX 76269838 76269943 -100704197 + (TA)n Simple_repeat Simple_repeat 2 106 0 609 169 89 16 chrX 76270026 76270150 -100703990 + AluJ SINE Alu 6 138 -174 1078 180 0 0 chrX 76270196 76270368 -100703772 + AluJ SINE Alu 121 292 -20 586 349 57 30 chrX 76270428 76270866 -100703274 + LTR16A LTR ERVL 1 450 0 333 213 74 16 chrX 76271696 76271818 -100702322 + MER113 DNA MER1_type? 2 130 -391 220 145 16 16 chrX 76271842 76271904 -100702236 + (TA)n Simple_repeat Simple_repeat 1 62 0 6231 237 26 2 chrX 76272454 76274043 -100700097 - L1PA13 LINE L1 -3154 3643 2003 963 264 9 21 chrX 76274040 76274377 -100699763 + L1 LINE L1 4948 5280 -866 * 1526 101 0 0 chrX 76274395 76274593 -100699547 + AluSq SINE Alu 1 198 -115 791 302 114 25 chrX 76275400 76275970 -100698170 + L1MB7 LINE L1 395 1015 -5189 9067 239 44 19 chrX 76275983 76277235 -100696905 + L1M1 LINE L1 3316 4535 -3052 1694 197 0 7 chrX 76277235 76277534 -100696606 + AluJo SINE Alu 1 297 -15 9067 239 44 19 chrX 76277534 76279662 -100694478 + L1M1 LINE L1 4535 6842 -745 11882 115 26 11 chrX 76279662 76281449 -100692691 + MER61-int LTR ERV1 3005 4818 -399 408 203 83 45 chrX 76281449 76281582 -100692558 - MLT1B LTR MaLR -252 138 1 1919 268 55 3 chrX 76281582 76282213 -100691927 + L1MB7 LINE L1 1036 1699 -4506 1102 222 69 44 chrX 76282208 76282568 -100691572 + L1MB7 LINE L1 4152 4520 -1683 * 410 215 0 0 chrX 76282562 76282641 -100691499 + L1MB7 LINE L1 5940 6018 -223 * 207 100 0 0 chrX 76282645 76282675 -100691465 + (TA)n Simple_repeat Simple_repeat 1 30 0 244 247 47 12 chrX 76282680 76282765 -100691375 + L1MC4 LINE L1 6614 6701 -1341 242 224 0 0 chrX 76282804 76282862 -100691278 - MLT1B LTR MaLR 0 505 448 * 390 279 8 25 chrX 76282861 76282983 -100691157 - MLT1B LTR MaLR -67 323 204 1092 160 5 10 chrX 76283029 76283223 -100690917 - MLT1B LTR MaLR -195 195 3 435 228 0 0 chrX 76283226 76283318 -100690822 + L1MB7 LINE L1 6042 6133 -108 1686 254 106 62 chrX 76283340 76284402 -100689738 + L1MD2 LINE L1 5042 6161 -198 288 0 0 0 chrX 76284402 76284434 -100689706 + (CA)n Simple_repeat Simple_repeat 2 33 0 1686 254 106 62 chrX 76284434 76284640 -100689500 + L1MD2 LINE L1 6161 6356 -3 219 146 0 0 chrX 76284674 76284699 -100689441 + (A)n Simple_repeat Simple_repeat 1 28 -20 1503 180 95 0 chrX 76284699 76284983 -100689157 + AluSx SINE Alu 1 311 -1 219 146 0 0 chrX 76284983 76285005 -100689135 + (A)n Simple_repeat Simple_repeat 27 48 0 923 224 195 3 chrX 76285298 76285611 -100688529 + L1MA7 LINE L1 5484 5856 -435 8704 174 9 8 chrX 76285612 76287514 -100686626 - L1PA12 LINE L1 0 7606 5696 2096 117 3 0 chrX 76287514 76287893 -100686247 + AluSx SINE Alu 1 380 0 8704 174 9 8 chrX 76287893 76288453 -100685687 - L1PA12 LINE L1 -1910 5696 5138 8706 210 15 4 chrX 76288454 76290284 -100683856 - L1P5 LINE L1 -610 5541 3676 201 39 0 0 chrX 76290284 76290310 -100683830 + (TTG)n Simple_repeat Simple_repeat 2 27 0 8706 210 15 4 chrX 76290310 76290747 -100683393 - L1P5 LINE L1 -2475 3676 3245 3462 101 50 9 chrX 76290753 76290943 -100683197 + L1PB1 LINE L1 5582 5763 -388 957 105 0 0 chrX 76290943 76291181 -100682959 + (TA)n Simple_repeat Simple_repeat 1 238 0 3462 101 50 9 chrX 76291181 76291533 -100682607 + L1PB1 LINE L1 5763 6148 -3 29 47 0 0 chrX 76291533 76291576 -100682564 + AT_rich Low_complexity Low_complexity 1 43 0 1997 188 8 0 chrX 76291576 76291959 -100682181 - L1PA12 LINE L1 -2437 5147 4762 32268 37 1 2 chrX 76291961 76298114 -100676026 - L1PA3 LINE L1 -3 6152 9 4584 215 5 1 chrX 76298123 76299122 -100675018 - L1PA12 LINE L1 -2806 4778 3776 2244 170 36 13 chrX 76299137 76299584 -100674556 - L1PA12 LINE L1 -4707 2867 2411 8457 199 26 14 chrX 76299642 76301186 -100672954 - L1PA12 LINE L1 -5996 1585 24 1646 183 12 6 chrX 76301186 76301508 -100672632 + L1MB1 LINE L1 5844 6167 -1 28 48 0 0 chrX 76301875 76301917 -100672223 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chrX 76302101 76302131 -100672009 + AT_rich Low_complexity Low_complexity 1 30 0 6787 247 118 36 chrX 76302521 76305290 -100668850 + L1PA16 LINE L1 1931 4471 -1695 1559 196 3 34 chrX 76305290 76305611 -100668529 + AluJb SINE Alu 1 311 -1 6787 247 118 36 chrX 76305611 76305911 -100668229 + L1PA16 LINE L1 4471 4745 -1421 6937 70 2 0 chrX 76305911 76307282 -100666858 - L1PA6 LINE L1 0 6154 4783 6787 247 118 36 chrX 76307282 76307999 -100666141 + L1PA16 LINE L1 4745 6029 -137 25 90 0 0 chrX 76308034 76308101 -100666039 + AT_rich Low_complexity Low_complexity 1 67 0 4895 145 17 15 chrX 76308785 76309993 -100664147 - L1PA16 LINE L1 -1 6165 4935 341 317 83 16 chrX 76310440 76310872 -100663268 - L1M4 LINE L1 -2349 3797 3337 29355 113 6 11 chrX 76310951 76316369 -100657771 + L1PA7 LINE L1 1034 6468 -1 2634 131 44 4 chrX 76316378 76316828 -100657312 - MER57-int LTR ERV1 -1500 3717 3250 510 70 14 0 chrX 76316828 76316899 -100657241 + AluY SINE Alu 13 84 -226 1747 94 0 37 chrX 76316899 76317143 -100656997 - AluY SINE Alu -76 235 1 491 230 16 16 chrX 76317143 76317269 -100656871 - MER57-int LTR ERV1 -2959 4578 4453 2553 223 22 69 chrX 76317269 76317399 -100656741 + L1MA3 LINE L1 4559 4694 -1611 222 37 0 0 chrX 76317399 76317426 -100656714 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2553 223 22 69 chrX 76317426 76317675 -100656465 + L1MA3 LINE L1 4694 4953 -1352 606 42 0 62 chrX 76317675 76317771 -100656369 + L1PA10 LINE L1 6078 6167 -1 2553 223 22 69 chrX 76317771 76318161 -100655979 + L1MA3 LINE L1 4953 5360 -945 933 90 0 0 chrX 76318161 76318295 -100655845 + L1PA13 LINE L1 6026 6159 -4 2553 223 22 69 chrX 76318295 76319022 -100655118 + L1MA3 LINE L1 5360 5988 -317 38 0 0 0 chrX 76319029 76319067 -100655073 + AT_rich Low_complexity Low_complexity 1 38 0 860 211 83 47 chrX 76319280 76319385 -100654755 - L1MC5 LINE L1 -36 7925 7825 6129 90 11 5 chrX 76319385 76320062 -100654078 - L1PA14 LINE L1 -1 6160 5489 2264 77 0 51 chrX 76320062 76320375 -100653765 - AluY SINE Alu -14 297 1 6129 90 11 5 chrX 76320375 76321281 -100652859 - L1PA14 LINE L1 -672 5489 4578 860 211 83 47 chrX 76321281 76321597 -100652543 - L1MC5 LINE L1 -136 7825 7489 510 214 90 14 chrX 76321657 76321802 -100652338 - L1ME1 LINE L1 -4 6162 6007 921 227 5 5 chrX 76321807 76321992 -100652148 - MER68 LTR ERV1 -76 486 302 5153 187 15 16 chrX 76321996 76323675 -100650465 - L1PA16 LINE L1 -6 6160 4488 3729 207 9 13 chrX 76323675 76323810 -100650330 + L1 LINE L1 3616 3750 -2396 385 83 12 83 chrX 76323810 76323894 -100650246 + MADE1 DNA Mariner 3 80 0 3729 207 9 13 chrX 76323894 76324597 -100649543 + L1 LINE L1 3750 4451 -1695 820 232 58 21 chrX 76324607 76324848 -100649292 - L1ME1 LINE L1 -144 6022 5773 645 219 14 7 chrX 76326253 76326399 -100647741 - MLT1F LTR MaLR -211 331 185 1548 215 8 3 chrX 76327250 76327613 -100646527 - L1PB1 LINE L1 -783 5363 4999 4440 100 14 115 chrX 76327614 76328475 -100645665 + L1PB1 LINE L1 5377 6150 -1 12140 221 30 51 chrX 76328585 76330081 -100644059 - L1PA15 LINE L1 -226 6590 5065 6502 71 9 2 chrX 76330081 76330950 -100643190 + L1PA8 LINE L1 5292 6166 -6 12140 221 30 51 chrX 76330950 76334909 -100639231 - L1PA15 LINE L1 -1751 5065 1244 25 108 0 0 chrX 76335013 76335115 -100639025 + AT_rich Low_complexity Low_complexity 1 102 0 1659 181 28 0 chrX 76335473 76335799 -100638341 - L1MA9 LINE L1 -4 6308 5974 3865 242 70 67 chrX 76335799 76335936 -100638204 - L1M3c LINE L1 -4913 1228 1093 252 132 0 0 chrX 76335936 76335974 -100638166 - tRNA-Gly-GGA tRNA tRNA -37 38 1 3865 242 70 67 chrX 76335974 76337020 -100637120 - L1M3c LINE L1 -5048 1093 1 466 266 181 18 chrX 76338577 76338803 -100635337 + MLT1A2 LTR MaLR 3 265 -100 3203 242 86 33 chrX 76338941 76339779 -100634361 + MLT-int LTR MaLR 849 1730 -5 630 189 89 65 chrX 76339935 76340104 -100634036 + MLT1A2 LTR MaLR 224 374 0 246 244 13 26 chrX 76340674 76340752 -100633388 + MIR SINE MIR 154 230 -32 842 270 4 8 chrX 76341275 76341538 -100632602 - L1P LINE L1 -987 5159 4898 16786 75 10 1 chrX 76341542 76343695 -100630445 - HERVL-A1 LTR ERVL -3482 2172 1 3403 85 0 5 chrX 76343695 76344141 -100629999 - MLT2A1 LTR ERVL 0 444 1 1688 143 3 9 chrX 76344171 76344546 -100629594 + L1PB1 LINE L1 5160 5527 -624 1231 26 39 0 chrX 76344546 76344701 -100629439 - L1PA5 LINE L1 -3 6151 5991 3964 120 8 3 chrX 76344701 76345308 -100628832 + L1PB1 LINE L1 5533 6145 -6 3086 111 7 4 chrX 76344857 76345309 -100628831 + L1PB1 LINE L1 5694 6190 0 203 68 68 0 chrX 76345309 76345353 -100628787 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 1700 171 52 19 chrX 76345713 76346076 -100628064 - THE1C LTR MaLR 0 375 1 9970 134 31 8 chrX 76346076 76347619 -100626521 - THE1C-int LTR MaLR 0 1580 2 1828 146 58 25 chrX 76347620 76347983 -100626157 - THE1C LTR MaLR 0 375 1 3208 159 17 26 chrX 76348113 76348698 -100625442 - LTR22 LTR ERVK 0 580 1 25 0 0 0 chrX 76349008 76349033 -100625107 + AT_rich Low_complexity Low_complexity 1 25 0 323 226 11 0 chrX 76349404 76349496 -100624644 - L1MC4 LINE L1 -1342 6980 1994 200 321 28 38 chrX 76349618 76349724 -100624416 + MIR SINE MIR 76 180 -82 14242 186 51 24 chrX 76349810 76351586 -100622554 + L1M1 LINE L1 5 1890 -5675 854 23 53 0 chrX 76351586 76351719 -100622421 + (GA)n Simple_repeat Simple_repeat 1 140 0 14242 186 51 24 chrX 76351719 76352863 -100621277 + L1M1 LINE L1 1890 3002 -4563 1878 109 168 6 chrX 76352863 76353221 -100620919 - LTR14B LTR ERVK 0 608 193 366 81 0 32 chrX 76353195 76353257 -100620883 - LTR14B LTR ERVK -548 60 1 * 41850 59 11 2 chrX 76353260 76358985 -100615155 - HERVK14 LTR ERVK 0 5945 1 2106 98 115 25 chrX 76358985 76359388 -100614752 - LTR14B LTR ERVK 0 608 1 6793 216 24 5 chrX 76359426 76361475 -100612665 + L1M1 LINE L1 3167 5256 -2309 2751 128 28 6 chrX 76361478 76361948 -100612192 + L1MA2 LINE L1 5825 6304 0 210 71 0 0 chrX 76362198 76362226 -100611914 + (T)n Simple_repeat Simple_repeat 1 28 0 356 227 80 0 chrX 76362278 76362366 -100611774 + LOR1-int LTR ERV1 6046 6140 -618 * 1287 201 31 10 chrX 76362365 76362700 -100611440 + LOR1-int LTR ERV1 6384 7079 -21 976 187 33 103 chrX 76362733 76363033 -100611107 + MER49 LTR ERV1 11 289 -634 533 176 19 19 chrX 76363019 76363127 -100611013 + MER49 LTR ERV1 616 723 -200 * 885 215 36 27 chrX 76363130 76363349 -100610791 + MER41D-int LTR ERV1 4608 4828 -1848 2016 281 28 24 chrX 76363566 76363625 -100610515 + MER41D-int LTR ERV1 6768 6825 -931 2324 124 34 6 chrX 76363625 76363979 -100610161 + THE1B LTR MaLR 1 364 0 10276 121 11 26 chrX 76363979 76365583 -100608557 + THE1B-int LTR MaLR 1 1580 0 2488 112 22 6 chrX 76365583 76365941 -100608199 + THE1B LTR MaLR 1 364 0 2016 281 28 24 chrX 76365941 76366624 -100607516 + MER41D-int LTR ERV1 6824 7515 -241 290 213 13 27 chrX 76366771 76366846 -100607294 + MER41D-int LTR ERV1 5865 5938 -8 3047 163 40 2 chrX 76366850 76367353 -100606787 + MER41D LTR ERV1 2 523 -34 6793 209 13 15 chrX 76367395 76369790 -100604350 - L1PA15 LINE L1 0 6165 3759 340 297 127 10 chrX 76369883 76370277 -100603863 + L1ME3A LINE L1 2252 2691 -3455 629 307 29 19 chrX 76370316 76370733 -100603407 + L1ME3A LINE L1 4840 5260 -886 1827 110 30 0 chrX 76370744 76371008 -100603132 + AluY SINE Alu 1 272 -39 891 159 0 0 chrX 76371128 76371266 -100602874 + FLAM_C SINE Alu 6 143 0 774 232 22 22 chrX 76371278 76371463 -100602677 + AluJb SINE Alu 119 303 -9 259 114 0 0 chrX 76371473 76371517 -100602623 + L1ME3A LINE L1 5401 5444 -726 398 331 70 35 chrX 76371596 76371937 -100602203 + L1ME3A LINE L1 5468 5820 -301 264 204 97 19 chrX 76371938 76372041 -100602099 + L1ME3A LINE L1 5838 5948 -222 309 242 77 0 chrX 76372253 76372344 -100601796 - L2 LINE L2 -1313 2001 1904 338 354 115 19 chrX 76372408 76372617 -100601523 + MIR SINE MIR 24 252 -10 37 0 0 0 chrX 76372693 76372730 -100601410 + AT_rich Low_complexity Low_complexity 1 37 0 4052 132 61 3 chrX 76372773 76373495 -100600645 - L1MA4A LINE L1 -6 6297 5534 1921 186 41 46 chrX 76373618 76373731 -100600409 + MER67B LTR ERV1 8 120 -541 1251 118 50 0 chrX 76373731 76373951 -100600189 + L1MA8 LINE L1 6059 6289 -2 1921 186 41 46 chrX 76373951 76374252 -100599888 + MER67B LTR ERV1 120 420 -241 447 213 36 86 chrX 76374252 76374553 -100599587 + pTR5 LTR ERV1 743 1028 -1410 2416 141 234 0 chrX 76374626 76375095 -100599045 + LTR12 LTR ERV1 1 579 -135 853 211 72 10 chrX 76375095 76375289 -100598851 + MER67B LTR ERV1 415 620 -41 1588 190 7 92 chrX 76376206 76376632 -100597508 - MLT1B LTR MaLR 0 390 1 180 77 0 0 chrX 76376770 76376796 -100597344 + (TG)n Simple_repeat Simple_repeat 1 26 0 324 393 44 27 chrX 76378180 76378363 -100595777 - MIR SINE MIR -32 230 45 1193 267 120 5 chrX 76378545 76378912 -100595228 - MLT1J LTR MaLR -91 420 12 809 224 54 31 chrX 76379366 76379589 -100594551 - MER106A DNA MER1_type -8 228 1 241 279 33 0 chrX 76380229 76380290 -100593850 - MER91B DNA MER1_type -126 64 2 2424 209 43 68 chrX 76380501 76381426 -100592714 - Charlie2 DNA MER1_type 0 2862 1961 3054 171 12 77 chrX 76381482 76382167 -100591973 + MER73 LTR ERVL 3 642 -2 749 285 50 44 chrX 76382195 76382514 -100591626 - Charlie2 DNA MER1_type -2540 322 2 3202 198 11 5 chrX 76383296 76383957 -100590183 + L1MB3 LINE L1 5516 6180 -3 2356 66 0 23 chrX 76384416 76384718 -100589422 - AluY SINE Alu -16 295 1 21 0 0 0 chrX 76384915 76384936 -100589204 + AT_rich Low_complexity Low_complexity 1 21 0 2380 126 11 0 chrX 76385188 76385553 -100588587 - L1PB1 LINE L1 -1 6150 5782 243 148 16 33 chrX 76385553 76385614 -100588526 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 3665 140 12 29 chrX 76385614 76386534 -100587606 - L1PB1 LINE L1 -360 5791 4891 1928 126 24 81 chrX 76386534 76386916 -100587224 + THE1B LTR MaLR 5 364 0 3665 140 12 29 chrX 76386916 76387152 -100586988 - L1PB1 LINE L1 -1260 4891 4653 25 0 0 0 chrX 76387438 76387463 -100586677 + AT_rich Low_complexity Low_complexity 1 25 0 217 323 0 54 chrX 76387983 76388076 -100586064 - MIR SINE MIR -87 175 88 264 164 45 0 chrX 76388144 76388211 -100585929 - L1MB2 LINE L1 -4 6167 6098 193 307 0 40 chrX 76388786 76388861 -100585279 + L2 LINE L2 3201 3272 0 307 297 141 8 chrX 76388902 76389030 -100585110 + L2 LINE L2 3167 3311 -2 4869 170 37 27 chrX 76390388 76391421 -100582719 - L1MA9 LINE L1 -39 6273 5229 1665 290 47 26 chrX 76391512 76392533 -100581607 - L1M1 LINE L1 -3933 2449 1321 518 199 0 104 chrX 76392543 76392678 -100581462 + MER44D DNA MER2_type 7 396 -213 1404 193 51 18 chrX 76394264 76394539 -100579601 + AluJb SINE Alu 1 284 -28 247 325 71 32 chrX 76394628 76394754 -100579386 - MER5B DNA MER1_type -47 131 1 428 288 18 47 chrX 76394830 76395000 -100579140 + MLT1A1 LTR MaLR 167 331 -34 3783 158 68 3 chrX 76395223 76395909 -100578231 - L1PA16 LINE L1 -1 7584 6780 2175 107 0 17 chrX 76395909 76396209 -100577931 - AluSq SINE Alu -5 308 14 3783 158 68 3 chrX 76396209 76396322 -100577818 - L1PA16 LINE L1 -805 6780 6676 867 138 115 0 chrX 76396315 76396489 -100577651 - L1PA16 LINE L1 -4159 3406 3213 * 1200 154 89 35 chrX 76396491 76396617 -100577523 + THE1C LTR MaLR 66 184 -191 315 0 0 0 chrX 76396617 76396652 -100577488 + (TC)n Simple_repeat Simple_repeat 1 35 0 1200 154 89 35 chrX 76396652 76396784 -100577356 + THE1C LTR MaLR 184 338 -37 1912 126 30 0 chrX 76396784 76397118 -100577022 + L1M1 LINE L1 2141 2484 -5081 4730 175 10 0 chrX 76397144 76397915 -100576225 - L1PA16 LINE L1 -5414 2151 1373 401 106 0 30 chrX 76397928 76397994 -100576146 + THE1C LTR MaLR 365 428 0 1157 113 32 5 chrX 76397997 76398183 -100575957 + THE1C-int LTR MaLR 4 194 -1386 6432 265 15 13 chrX 76398185 76400022 -100574118 - L1P LINE L1 -1896 4250 2411 2689 215 34 3 chrX 76400376 76400986 -100573154 - L1MB4 LINE L1 -61 6119 5491 1585 271 40 13 chrX 76401140 76401452 -100572688 + L1ME3 LINE L1 5499 5832 -330 1580 184 3 36 chrX 76401452 76401756 -100572384 + AluJo SINE Alu 1 294 -18 1585 271 40 13 chrX 76401756 76401971 -100572169 + L1ME3 LINE L1 5832 6040 -122 875 225 52 30 chrX 76402053 76402284 -100571856 + MER39 LTR ERV1 268 503 -204 815 204 13 0 chrX 76402310 76402462 -100571678 + FRAM SINE Alu 1 154 -12 203 122 0 24 chrX 76402473 76402514 -100571626 + (TG)n Simple_repeat Simple_repeat 1 40 0 1718 129 14 3 chrX 76402657 76402943 -100571197 - HSMAR2 DNA Mariner -1012 290 2 261 119 0 0 chrX 76402943 76402985 -100571155 + (TA)n Simple_repeat Simple_repeat 2 43 0 1582 274 48 2 chrX 76403019 76403663 -100570477 + L1M3 LINE L1 4791 5456 -724 460 17 119 0 chrX 76403768 76403886 -100570254 + (TA)n Simple_repeat Simple_repeat 1 132 0 4729 212 19 14 chrX 76403900 76405052 -100569088 - L1MB4 LINE L1 -969 5177 4020 295 268 32 32 chrX 76405080 76405203 -100568937 + HAL1b LINE L1 748 870 -478 28 0 0 0 chrX 76405476 76405504 -100568636 + AT_rich Low_complexity Low_complexity 1 28 0 1439 135 47 91 chrX 76406049 76406315 -100567825 + THE1C LTR MaLR 72 348 -27 192 40 0 0 chrX 76406315 76406340 -100567800 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1585 161 0 82 chrX 76406344 76406648 -100567492 - AluSx SINE Alu -33 279 1 1439 135 47 91 chrX 76406648 76406694 -100567446 + THE1C LTR MaLR 351 375 0 8620 187 19 7 chrX 76406698 76408325 -100565815 + MSTA-int LTR MaLR 5 1651 0 1446 191 177 11 chrX 76408325 76408692 -100565448 + MSTA LTR MaLR 1 428 0 338 299 51 46 chrX 76408697 76408894 -100565246 - L1M4 LINE L1 -1182 5462 5265 1161 195 79 96 chrX 76408928 76409322 -100564818 + MLT1B LTR MaLR 4 390 0 1295 196 75 28 chrX 76409327 76409648 -100564492 + MER44D DNA MER2_type 3 608 -1 1666 257 123 30 chrX 76409682 76410661 -100563479 - L1M4 LINE L1 -1487 5157 4088 4328 157 30 4 chrX 76410769 76411139 -100563001 + HSMAR2 DNA Mariner 521 880 -422 342 0 0 0 chrX 76411139 76411177 -100562963 + (CA)n Simple_repeat Simple_repeat 1 38 0 4328 157 30 4 chrX 76411177 76411564 -100562576 + HSMAR2 DNA Mariner 880 1298 -4 330 222 0 0 chrX 76411586 76411658 -100562482 - L1M4 LINE L1 -4797 1849 1778 337 237 36 43 chrX 76411687 76411826 -100562314 - L1M4 LINE L1 -5589 953 816 376 252 29 10 chrX 76411922 76412025 -100562115 - L1M4 LINE L1 -5720 926 822 386 339 76 6 chrX 76412119 76412290 -100561850 - MIR SINE MIR -12 250 68 378 0 0 0 chrX 76412928 76412970 -100561170 + (TC)n Simple_repeat Simple_repeat 1 42 0 273 29 0 0 chrX 76412971 76413005 -100561135 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chrX 76413275 76413297 -100560843 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chrX 76413912 76413949 -100560191 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chrX 76414110 76414139 -100560001 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 76414821 76414843 -100559297 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chrX 76415719 76415748 -100558392 + AT_rich Low_complexity Low_complexity 1 29 0 11187 231 42 30 chrX 76416629 76416966 -100557174 + L1M1 LINE L1 1432 1763 -4540 2059 147 85 18 chrX 76416966 76417367 -100556773 + MSTA LTR MaLR 1 428 0 11187 231 42 30 chrX 76417367 76417438 -100556702 + L1M1 LINE L1 1763 1832 -4471 216 0 0 0 chrX 76417438 76417462 -100556678 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 11187 231 42 30 chrX 76417462 76418730 -100555410 + L1M1 LINE L1 1832 3082 -3221 2104 112 13 0 chrX 76418730 76419033 -100555107 + AluSx SINE Alu 1 307 -5 11187 231 42 30 chrX 76419033 76419857 -100554283 + L1M1 LINE L1 3082 3894 -2409 2388 80 0 0 chrX 76419857 76420159 -100553981 - AluY SINE Alu -8 303 2 11187 231 42 30 chrX 76420159 76421776 -100552364 + L1M1 LINE L1 3894 5582 -721 1539 152 23 4 chrX 76421776 76422039 -100552101 - MER46B DNA MER2_type -93 143 1 911 116 40 0 chrX 76422048 76422221 -100551919 + L1MA7 LINE L1 6109 6288 -3 467 152 0 0 chrX 76422270 76422349 -100551791 - L1MA9 LINE L1 -25 6287 6209 198 309 15 0 chrX 76422437 76422505 -100551635 - MIR SINE MIR -1 261 193 5913 121 13 5 chrX 76423027 76423040 -100551100 - L1PB2 LINE L1 -2 6149 6138 180 0 0 0 chrX 76423040 76423060 -100551080 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 5913 121 13 5 chrX 76423060 76424005 -100550135 - L1PB2 LINE L1 -13 6138 5185 235 94 24 63 chrX 76424021 76424148 -100549992 + (TTATA)n Simple_repeat Simple_repeat 1 122 0 2028 260 70 21 chrX 76424261 76424606 -100549534 - L1M4 LINE L1 -2741 3405 3078 575 250 9 0 chrX 76424606 76424764 -100549376 - FLAM_A SINE Alu 0 161 3 2028 260 70 21 chrX 76424764 76425503 -100548637 - L1M4 LINE L1 -3068 3078 2266 250 378 56 15 chrX 76426181 76426451 -100547689 - L1MEd LINE L1 -5774 345 65 201 74 0 0 chrX 76427892 76427919 -100546221 + (CA)n Simple_repeat Simple_repeat 2 28 0 28 71 0 0 chrX 76428100 76428156 -100545984 + AT_rich Low_complexity Low_complexity 1 56 0 2026 140 73 9 chrX 76428236 76428578 -100545562 - THE1B LTR MaLR 0 364 1 11022 110 6 2 chrX 76428584 76430125 -100544015 - THE1B-int LTR MaLR -7 1573 27 7491 194 16 23 chrX 76430116 76430485 -100543655 + L1MA3 LINE L1 3605 3975 -2267 * 2031 93 0 31 chrX 76430485 76430813 -100543327 + AluY SINE Alu 1 319 0 7491 194 16 23 chrX 76430813 76432349 -100541791 + L1MA3 LINE L1 3975 5499 -743 4352 158 34 12 chrX 76432368 76433192 -100540948 + L1MA3 LINE L1 5464 6305 0 24 32 0 0 chrX 76433279 76433310 -100540830 + AT_rich Low_complexity Low_complexity 1 31 0 213 205 0 0 chrX 76434294 76434333 -100539807 + (TG)n Simple_repeat Simple_repeat 2 40 0 4038 112 78 18 chrX 76434879 76435838 -100538302 - MER11A LTR ERVK 0 1266 1 480 272 16 0 chrX 76436134 76436259 -100537881 + FLAM_C SINE Alu 1 127 -16 379 216 68 25 chrX 76436268 76436453 -100537687 - LTR48 LTR ERV1 -22 739 433 * 933 254 73 26 chrX 76436451 76436841 -100537299 - LTR48 LTR ERV1 -302 485 1 468 58 76 29 chrX 76436977 76437148 -100536992 + (TA)n Simple_repeat Simple_repeat 2 180 0 254 167 22 67 chrX 76437148 76437238 -100536902 + (TATAG)n Simple_repeat Simple_repeat 1 86 0 477 17 61 72 chrX 76437238 76437419 -100536721 + (TA)n Simple_repeat Simple_repeat 2 180 0 412 38 76 51 chrX 76437471 76437629 -100536511 + (TA)n Simple_repeat Simple_repeat 1 162 0 381 44 89 43 chrX 76437646 76437980 -100536160 + (TA)n Simple_repeat Simple_repeat 1 349 0 1420 162 108 59 chrX 76438000 76438486 -100535654 - MER4A LTR ERV1 -21 444 75 443 48 16 0 chrX 76438492 76438554 -100535586 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 330 326 0 56 chrX 76438565 76438743 -100535397 + L1MEc LINE L1 1229 1396 -5000 675 345 78 49 chrX 76438967 76439495 -100534645 + L3 LINE CR1 814 1356 -221 2174 91 3 0 chrX 76439495 76439807 -100534333 + AluSp SINE Alu 1 313 0 742 284 9 39 chrX 76439827 76439882 -100534258 + MIR SINE MIR 41 96 -166 1173 219 34 109 chrX 76439882 76440330 -100533810 - MLT2D LTR ERVL 0 414 1 742 284 9 39 chrX 76440330 76440503 -100533637 + MIR SINE MIR 96 262 0 21 71 0 0 chrX 76441023 76441065 -100533075 + AT_rich Low_complexity Low_complexity 1 42 0 2028 139 3 7 chrX 76441192 76441494 -100532646 - AluSx SINE Alu -11 301 1 1366 206 8 83 chrX 76442480 76442854 -100531286 - MER31A LTR ERV1 -8 477 132 5355 146 152 74 chrX 76443136 76444573 -100529567 - MER4A-int LTR ERV1 -5048 1550 1 1743 126 0 19 chrX 76444576 76444838 -100529302 - MER4A LTR ERV1 0 664 408 1044 200 170 35 chrX 76444830 76445200 -100528940 - LTR10B LTR ERV1 -115 432 13 * 3866 161 95 39 chrX 76445223 76446611 -100527529 + MER4-int LTR ERV1 1514 3272 -3326 4393 23 6 0 chrX 76446611 76447131 -100527009 + L1PA4 LINE L1 5631 6153 -2 3866 161 95 39 chrX 76447131 76447566 -100526574 + MER4-int LTR ERV1 3272 3681 -2917 * 9455 149 50 32 chrX 76447565 76447926 -100526214 + MER4-int LTR ERV1 3837 4190 -2408 2438 93 0 0 chrX 76447926 76448238 -100525902 + AluSq SINE Alu 1 312 -1 9455 149 50 32 chrX 76448238 76449775 -100524365 + MER4-int LTR ERV1 4190 5769 -829 279 358 62 12 chrX 76451458 76451620 -100522520 + MIR3 SINE MIR 16 185 -23 358 333 94 6 chrX 76451628 76451808 -100522332 + MIR SINE MIR 12 207 -55 2017 33 0 0 chrX 76452096 76452337 -100521803 + L1PA3 LINE L1 5915 6155 0 212 414 0 47 chrX 76452733 76452861 -100521279 + L2 LINE L2 3187 3308 -5 1354 243 7 3 chrX 76452985 76453116 -100521024 + AluJo SINE Alu 1 130 -182 2199 120 0 7 chrX 76453116 76453424 -100520716 + AluSg SINE Alu 1 306 -4 1354 243 7 3 chrX 76453424 76453580 -100520560 + AluJo SINE Alu 130 289 -23 396 243 0 0 chrX 76453601 76453712 -100520428 + (TA)n Simple_repeat Simple_repeat 2 112 0 257 290 26 103 chrX 76453752 76453996 -100520144 + MIR SINE MIR 5 223 -39 368 404 40 14 chrX 76455438 76455762 -100518378 - L2 LINE L2 -210 3062 2736 706 267 35 56 chrX 76455845 76455890 -100518250 + L2 LINE L2 1201 1245 -2069 1707 183 121 18 chrX 76455890 76456278 -100517862 - MSTA LTR MaLR 0 428 1 9311 147 6 35 chrX 76456280 76457903 -100516237 - MSTA-int LTR MaLR -2 1578 4 1387 183 108 77 chrX 76457906 76458321 -100515819 - MSTA LTR MaLR 0 428 1 706 267 35 56 chrX 76458321 76458556 -100515584 + L2 LINE L2 1248 1482 -1832 287 246 79 78 chrX 76458789 76459047 -100515093 + MLT1E1 LTR MaLR 6 328 -326 * 1194 259 34 19 chrX 76459018 76459457 -100514683 + MLT1E3 LTR MaLR 174 624 0 545 281 6 6 chrX 76459458 76459625 -100514515 + MLT1E2-int LTR MaLR 2 168 -1203 1111 228 13 23 chrX 76459630 76459763 -100514377 + MLT1E2-int LTR MaLR 306 439 -932 2352 156 46 5 chrX 76459763 76460174 -100513966 - MSTA LTR MaLR 0 428 1 1111 228 13 23 chrX 76460174 76460343 -100513797 + MLT1E2-int LTR MaLR 439 605 -766 2340 79 0 35 chrX 76460614 76460957 -100513183 - AluY SINE Alu 0 334 3 265 323 20 0 chrX 76460995 76461094 -100513046 + MLT1E2-int LTR MaLR 787 887 -484 491 224 75 134 chrX 76461221 76461564 -100512576 + MLT1E2-int LTR MaLR 989 1272 -99 244 224 141 35 chrX 76461624 76461709 -100512431 + MLT1E2-int LTR MaLR 1248 1341 -30 1676 245 110 50 chrX 76461737 76462317 -100511823 + MLT1E2 LTR MaLR 1 615 -11 761 271 45 15 chrX 76462602 76462871 -100511269 + L2 LINE L2 1429 1705 -1609 2775 192 8 15 chrX 76462883 76463414 -100510726 - MER44D DNA MER2_type -23 582 1 655 244 96 39 chrX 76463516 76463746 -100510394 + L2 LINE L2 1770 2012 -1302 356 329 57 69 chrX 76463828 76463893 -100510247 - LTR16C LTR ERVL -67 424 360 2393 98 0 16 chrX 76463893 76464210 -100509930 + AluSp SINE Alu 1 312 -1 356 329 57 69 chrX 76464210 76464390 -100509750 - LTR16C LTR ERVL -131 360 182 241 326 20 20 chrX 76464465 76464563 -100509577 - LTR16C LTR ERVL -391 100 3 1381 265 219 12 chrX 76464587 76465150 -100508990 + L2 LINE L2 2135 2813 -501 279 308 154 14 chrX 76465409 76465552 -100508588 - MIR3 SINE MIR -32 176 14 615 187 32 24 chrX 76465653 76465776 -100508364 - FLAM_C SINE Alu -7 126 3 1173 143 102 2 chrX 76465803 76466035 -100508105 - L1MA6 LINE L1 -2 6298 6053 309 170 0 0 chrX 76466035 76466082 -100508058 + Alu SINE Alu 1 47 -255 905 148 101 0 chrX 76466083 76466232 -100507908 + AluSg/x SINE Alu 137 300 -10 725 222 25 0 chrX 76466232 76466394 -100507746 - L1M1 LINE L1 -738 5565 5400 261 302 34 40 chrX 76467761 76468004 -100506136 + L1M2 LINE L1 1542 2096 -4331 351 273 67 67 chrX 76468305 76468514 -100505626 + L1M2 LINE L1 3098 3306 -3120 1042 285 48 0 chrX 76468521 76468833 -100505307 - MER58B DNA MER1_type 0 341 15 195 42 0 0 chrX 76469052 76469076 -100505064 + (TTA)n Simple_repeat Simple_repeat 3 26 0 5323 55 0 0 chrX 76469076 76469728 -100504412 - L1PA7 LINE L1 -18 6136 5485 7777 94 0 4 chrX 76469741 76471635 -100502505 + L1PA7 LINE L1 4260 6154 0 3915 167 83 12 chrX 76471638 76472932 -100501208 - L1PBa LINE L1 -3369 3493 2107 689 149 8 8 chrX 76472909 76473043 -100501097 - L1PBa LINE L1 -4994 1869 1736 * 322 291 16 47 chrX 76473122 76473249 -100500891 + MER5A DNA MER1_type 64 186 -3 180 351 70 59 chrX 76474727 76474998 -100499142 - L2 LINE L2 -122 3150 2877 22 0 0 0 chrX 76475158 76475180 -100498960 + AT_rich Low_complexity Low_complexity 1 22 0 1093 177 26 9 chrX 76475612 76475838 -100498302 - L1PA15 LINE L1 0 6165 5936 1972 76 112 4 chrX 76475838 76476241 -100497899 + L1PA16 LINE L1 5065 5494 -660 904 99 63 7 chrX 76476239 76476381 -100497759 + L1PA16 LINE L1 5793 5942 -224 * 12412 243 31 12 chrX 76476379 76479850 -100494290 - L1P LINE L1 -828 5318 1782 1878 307 31 23 chrX 76479906 76480593 -100493547 - L1PA12 LINE L1 -5362 2219 1528 328 87 22 0 chrX 76480601 76480647 -100493493 + THE1A LTR MaLR 309 355 0 6111 142 42 55 chrX 76480647 76483205 -100490935 - MER41A-int LTR ERV1 -1212 3967 1 4057 86 7 11 chrX 76483205 76483761 -100490379 - MER41A LTR ERV1 0 554 1 2907 188 55 13 chrX 76483962 76484575 -100489565 - MER39B LTR ERV1 -11 642 4 26 30 0 0 chrX 76484680 76484713 -100489427 + AT_rich Low_complexity Low_complexity 1 33 0 1894 126 40 3 chrX 76484840 76485165 -100488975 + L1MA1 LINE L1 5963 6299 -3 1456 216 29 20 chrX 76485258 76485564 -100488576 + AluJo SINE Alu 4 312 0 1442 307 70 21 chrX 76485702 76486171 -100487969 - MER115 DNA AcHobo -10 683 192 426 184 89 126 chrX 76486188 76486459 -100487681 - LTR48 LTR ERV1 -2 785 525 2837 165 5 45 chrX 76486476 76487029 -100487111 + MER61E LTR ERV1 1 531 -38 238 238 95 0 chrX 76487177 76487261 -100486879 - MER39 LTR ERV1 -589 118 27 264 313 27 48 chrX 76487289 76487436 -100486704 - MER115 DNA AcHobo -522 171 28 * 843 258 113 47 chrX 76487421 76487483 -100486657 + MER34C LTR ERV1 12 68 -517 3050 146 40 55 chrX 76487483 76488088 -100486052 + LTR59 LTR ERV1 1 596 -1 843 258 113 47 chrX 76488088 76488563 -100485577 + MER34C LTR ERV1 68 585 0 3592 108 108 2 chrX 76488622 76489196 -100484944 - MER41B LTR ERV1 0 635 1 269 373 40 8 chrX 76489466 76489592 -100484548 + MIR SINE MIR 20 149 -113 1282 210 0 28 chrX 76490360 76490612 -100483528 + AluJo SINE Alu 42 286 -26 195 114 0 0 chrX 76490612 76490647 -100483493 + (CAT)n Simple_repeat Simple_repeat 2 36 0 29 0 0 0 chrX 76490706 76490735 -100483405 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 76490785 76490814 -100483326 + AT_rich Low_complexity Low_complexity 1 29 0 2027 184 73 5 chrX 76490902 76491287 -100482853 - MSTB LTR MaLR -15 411 1 515 174 0 0 chrX 76492280 76492378 -100481762 - L1M LINE L1 -842 5400 5303 * 1822 278 118 45 chrX 76492376 76493159 -100480981 - L1MDb LINE L1 -5562 847 8 321 181 21 125 chrX 76493293 76493437 -100480703 - L1MC4 LINE L1 -1297 7025 1971 686 240 33 11 chrX 76493659 76493842 -100480298 + MER20 DNA MER1_type 33 219 0 1826 151 101 146 chrX 76493903 76494190 -100479950 + LTR36 LTR ERV1 9 307 -304 2263 71 40 0 chrX 76494190 76494512 -100479628 + L1PA5 LINE L1 5817 6151 -3 1826 151 101 146 chrX 76494512 76494855 -100479285 + LTR36 LTR ERV1 307 611 0 215 305 134 53 chrX 76494916 76495103 -100479037 + L2 LINE L2 2298 2499 -815 189 408 136 26 chrX 76495184 76495493 -100478647 + L2 LINE L2 2930 3272 0 31 58 0 0 chrX 76495619 76495671 -100478469 + AT_rich Low_complexity Low_complexity 1 52 0 28 61 0 0 chrX 76496015 76496064 -100478076 + AT_rich Low_complexity Low_complexity 1 49 0 349 285 31 23 chrX 76496587 76496717 -100477423 + MER34 LTR ERV1 1 131 -411 3590 185 62 51 chrX 76497224 76498119 -100476021 - MER4D LTR ERV1 0 866 1 285 109 0 0 chrX 76499878 76499924 -100474216 + (TG)n Simple_repeat Simple_repeat 1 46 0 831 149 0 0 chrX 76500351 76500472 -100473668 - FLAM_C SINE Alu -12 131 11 224 230 46 11 chrX 76500484 76500571 -100473569 + (CATA)n Simple_repeat Simple_repeat 3 92 0 25 65 0 0 chrX 76501071 76501117 -100473023 + AT_rich Low_complexity Low_complexity 1 46 0 383 351 107 30 chrX 76501605 76502007 -100472133 + L1M4 LINE L1 3366 3798 -2348 1565 221 0 10 chrX 76502187 76502494 -100471646 - AluJo SINE Alu -7 305 2 520 172 0 0 chrX 76502619 76502706 -100471434 + AluJ/FLAM SINE Alu 1 87 -225 2035 167 45 6 chrX 76502706 76503059 -100471081 - MER39B LTR ERV1 -284 369 3 631 315 106 14 chrX 76503127 76503419 -100470721 + MLT1L LTR MaLR 297 615 0 2280 121 0 0 chrX 76503511 76503824 -100470316 + AluSq SINE Alu 1 313 0 225 365 21 21 chrX 76503832 76503928 -100470212 - MIR SINE MIR -160 102 7 305 281 156 12 chrX 76503951 76504111 -100470029 - L1ME LINE L1 -318 5803 5621 21 57 0 0 chrX 76505336 76505371 -100468769 + AT_rich Low_complexity Low_complexity 1 35 0 367 261 39 2 chrX 76505372 76505530 -100468610 - L1ME LINE L1 -715 5436 5263 825 231 60 37 chrX 76505662 76505931 -100468209 - L1ME3 LINE L1 0 6162 5888 438 273 58 13 chrX 76506066 76506220 -100467920 - MLT1L LTR MaLR -339 276 116 23 54 0 0 chrX 76506387 76506424 -100467716 + AT_rich Low_complexity Low_complexity 1 37 0 24 91 0 0 chrX 76506730 76506796 -100467344 + AT_rich Low_complexity Low_complexity 1 66 0 24 91 0 0 chrX 76506984 76507050 -100467090 + AT_rich Low_complexity Low_complexity 1 66 0 29 28 0 0 chrX 76507351 76507387 -100466753 + AT_rich Low_complexity Low_complexity 1 36 0 1555 241 123 2 chrX 76507387 76507811 -100466329 + MLT1D LTR MaLR 29 503 -2 219 114 0 0 chrX 76509807 76509842 -100464298 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 159 0 0 chrX 76510433 76510477 -100463663 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chrX 76511258 76511280 -100462860 + AT_rich Low_complexity Low_complexity 1 22 0 312 305 52 63 chrX 76511634 76511763 -100462377 + L1M4 LINE L1 3900 4029 -2117 2436 62 0 0 chrX 76511763 76512053 -100462087 + AluY SINE Alu 1 290 -21 312 305 52 63 chrX 76512053 76512192 -100461948 + L1M4 LINE L1 4029 4165 -1981 25 51 0 0 chrX 76512429 76512468 -100461672 + AT_rich Low_complexity Low_complexity 1 39 0 1405 193 0 87 chrX 76512845 76513167 -100460973 - AluJo SINE Alu -18 294 1 25 65 0 0 chrX 76513969 76514015 -100460125 + AT_rich Low_complexity Low_complexity 1 46 0 712 225 0 0 chrX 76514372 76514501 -100459639 - FLAM_C SINE Alu -4 129 1 189 0 0 0 chrX 76514532 76514553 -100459587 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrX 76515032 76515053 -100459087 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chrX 76515252 76515300 -100458840 + AT_rich Low_complexity Low_complexity 1 48 0 206 189 0 19 chrX 76515549 76515602 -100458538 + (TA)n Simple_repeat Simple_repeat 1 52 0 624 227 8 0 chrX 76515623 76515751 -100458389 - FLAM_C SINE Alu -14 129 1 859 204 23 20 chrX 76516272 76516460 -100457680 + MLT1A1 LTR MaLR 1 193 -172 2781 180 92 43 chrX 76566462 76567643 -100406497 + MER4A-int LTR ERV1 924 2046 -4552 4376 23 6 0 chrX 76567643 76568163 -100405977 + L1PA4 LINE L1 5631 6153 -2 2781 180 92 43 chrX 76568163 76568598 -100405542 + MER4A-int LTR ERV1 2046 3681 -2917 * 13667 148 42 36 chrX 76568597 76568958 -100405182 + MER4A-int LTR ERV1 3837 4194 -2404 2408 93 0 0 chrX 76568958 76569270 -100404870 + AluSq SINE Alu 1 312 -1 13667 148 42 36 chrX 76569270 76571654 -100402486 + MER4A-int LTR ERV1 4194 6598 0 601 143 0 10 chrX 76571655 76571753 -100402387 + MER4A LTR ERV1 1 97 -567 * 1959 133 3 16 chrX 76571750 76572104 -100402036 + MER4A LTR ERV1 257 664 0 22 35 0 0 chrX 76572182 76572211 -100401929 + AT_rich Low_complexity Low_complexity 1 29 0 223 290 314 8 chrX 76572321 76572445 -100401695 - MIR3 SINE MIR -44 164 3 2311 192 24 4 chrX 76572558 76573018 -100401122 + MER34C LTR ERV1 1 470 -115 657 128 39 0 chrX 76573018 76573120 -100401020 + MER83 LTR ERV1 1 106 -342 * 1215 172 86 135 chrX 76573109 76573540 -100400600 + MER83 LTR ERV1 39 448 0 5021 177 14 63 chrX 76573584 76573683 -100400457 + MER83-int LTR ERV1 18 120 -4165 3393 160 18 74 chrX 76573683 76574414 -100399726 - LTR8 LTR ERV1 -1 690 1 5021 177 14 63 chrX 76574414 76575336 -100398804 + MER83-int LTR ERV1 120 989 -3296 3789 156 57 56 chrX 76575318 76575709 -100398431 + MER83-int LTR ERV1 1080 1469 -317 * 192 40 0 0 chrX 76575709 76575734 -100398406 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3789 156 57 56 chrX 76575734 76575946 -100398194 + MER83-int LTR ERV1 1469 1059 -727 2377 89 0 0 chrX 76575946 76576248 -100397892 + AluSq SINE Alu 1 302 -11 3789 156 57 56 chrX 76576248 76576789 -100397351 + MER83-int LTR ERV1 1058 1597 -189 2878 148 64 48 chrX 76576787 76577355 -100396785 + MER83-int LTR ERV1 2231 2811 -2069 * 1809 139 82 23 chrX 76577355 76577708 -100396432 - THE1C LTR MaLR -1 374 1 2878 148 64 48 chrX 76577708 76577747 -100396393 + MER83-int LTR ERV1 2811 2848 -2032 272 141 203 0 chrX 76577743 76577807 -100396333 + MER83-int LTR ERV1 2987 3063 -1817 * 1687 188 59 112 chrX 76577802 76578446 -100395694 + MER83-int LTR ERV1 4065 4674 -1272 1941 201 32 88 chrX 76578446 76578637 -100395503 + LTR8 LTR ERV1 1 201 -490 275 0 0 28 chrX 76578637 76578673 -100395467 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1941 201 32 88 chrX 76578673 76579072 -100395068 + LTR8 LTR ERV1 201 558 -133 1212 137 59 0 chrX 76579072 76579276 -100394864 + MER83-int LTR ERV1 4944 5159 -1172 476 167 53 9 chrX 76579276 76579390 -100394750 + MER83 LTR ERV1 298 416 -32 464 154 86 60 chrX 76579394 76579511 -100394629 + MER34C LTR ERV1 466 585 0 3590 185 62 51 chrX 76580162 76581057 -100393083 - MER4D LTR ERV1 0 866 1 285 109 0 0 chrX 76582816 76582862 -100391278 + (TG)n Simple_repeat Simple_repeat 1 46 0 831 149 0 0 chrX 76583289 76583410 -100390730 - FLAM_C SINE Alu -12 131 11 224 230 46 11 chrX 76583422 76583509 -100390631 + (CATA)n Simple_repeat Simple_repeat 3 92 0 25 65 0 0 chrX 76584009 76584055 -100390085 + AT_rich Low_complexity Low_complexity 1 46 0 383 351 107 30 chrX 76584543 76584945 -100389195 + L1M4 LINE L1 3366 3798 -2348 1565 221 0 10 chrX 76585125 76585432 -100388708 - AluJo SINE Alu -7 305 2 520 172 0 0 chrX 76585557 76585644 -100388496 + AluJ/FLAM SINE Alu 1 87 -225 2035 167 45 6 chrX 76585644 76585997 -100388143 - MER39B LTR ERV1 -284 369 3 631 315 106 14 chrX 76586065 76586357 -100387783 + MLT1L LTR MaLR 297 615 0 2280 121 0 0 chrX 76586449 76586762 -100387378 + AluSq SINE Alu 1 313 0 225 365 21 21 chrX 76586770 76586866 -100387274 - MIR SINE MIR -160 102 7 305 281 156 12 chrX 76586889 76587049 -100387091 - L1ME LINE L1 -318 5803 5621 21 57 0 0 chrX 76588274 76588309 -100385831 + AT_rich Low_complexity Low_complexity 1 35 0 367 261 39 2 chrX 76588310 76588468 -100385672 - L1ME LINE L1 -715 5436 5263 825 231 60 37 chrX 76588600 76588869 -100385271 - L1ME3 LINE L1 0 6162 5888 438 273 58 13 chrX 76589004 76589158 -100384982 - MLT1L LTR MaLR -339 276 116 23 54 0 0 chrX 76589325 76589362 -100384778 + AT_rich Low_complexity Low_complexity 1 37 0 24 91 0 0 chrX 76589668 76589734 -100384406 + AT_rich Low_complexity Low_complexity 1 66 0 24 91 0 0 chrX 76589922 76589988 -100384152 + AT_rich Low_complexity Low_complexity 1 66 0 29 28 0 0 chrX 76590289 76590325 -100383815 + AT_rich Low_complexity Low_complexity 1 36 0 1555 241 123 2 chrX 76590325 76590749 -100383391 + MLT1D LTR MaLR 29 503 -2 219 114 0 0 chrX 76592745 76592780 -100381360 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 159 0 0 chrX 76593371 76593415 -100380725 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chrX 76594196 76594218 -100379922 + AT_rich Low_complexity Low_complexity 1 22 0 312 305 52 63 chrX 76594572 76594701 -100379439 + L1M4 LINE L1 3900 4029 -2117 2436 62 0 0 chrX 76594701 76594991 -100379149 + AluY SINE Alu 1 290 -21 312 305 52 63 chrX 76594991 76595130 -100379010 + L1M4 LINE L1 4029 4165 -1981 25 51 0 0 chrX 76595367 76595406 -100378734 + AT_rich Low_complexity Low_complexity 1 39 0 1405 193 0 87 chrX 76595783 76596105 -100378035 - AluJo SINE Alu -18 294 1 25 65 0 0 chrX 76596907 76596953 -100377187 + AT_rich Low_complexity Low_complexity 1 46 0 712 225 0 0 chrX 76597310 76597439 -100376701 - FLAM_C SINE Alu -4 129 1 189 0 0 0 chrX 76597470 76597491 -100376649 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrX 76597970 76597991 -100376149 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chrX 76598190 76598238 -100375902 + AT_rich Low_complexity Low_complexity 1 48 0 206 189 0 19 chrX 76598487 76598540 -100375600 + (TA)n Simple_repeat Simple_repeat 1 52 0 638 227 8 0 chrX 76598561 76598689 -100375451 - FLAM_C SINE Alu -14 129 1 1643 225 14 15 chrX 76599210 76599572 -100374568 + MLT1A1 LTR MaLR 1 365 0 334 250 0 13 chrX 76599576 76599652 -100374488 - MER5B DNA MER1_type -20 158 84 5623 168 50 8 chrX 76600225 76602125 -100372015 + L1MA2 LINE L1 4320 6303 -1 1420 197 25 18 chrX 76602794 76603078 -100371062 + AluJo SINE Alu 1 286 -16 2003 142 2 5 chrX 76604591 76605142 -100368998 - MER4B LTR ERV1 0 610 1 434 307 26 93 chrX 76605252 76605522 -100368618 - L2 LINE L2 -1080 2234 1983 768 196 0 0 chrX 76605522 76605655 -100368485 + AluJ SINE Alu 1 133 -169 984 172 0 33 chrX 76605657 76605700 -100368440 + AluJ SINE Alu 128 171 -141 3277 124 2 4 chrX 76605700 76606161 -100367979 - LTR46 LTR ERV1 0 460 1 984 172 0 33 chrX 76606161 76606297 -100367843 + AluJ SINE Alu 171 301 -11 434 288 19 39 chrX 76606299 76606343 -100367797 - L2 LINE L2 -1327 1987 1944 1783 194 48 8 chrX 76606343 76606694 -100367446 - MLT1A1 LTR MaLR 0 365 1 434 288 19 39 chrX 76606694 76606854 -100367286 - L2 LINE L2 -1370 1944 1787 561 216 201 39 chrX 76607000 76607334 -100366806 - L1MC5 LINE L1 -76 7885 7498 571 313 0 34 chrX 76607334 76607513 -100366627 + MER5B DNA MER1_type 1 173 -5 669 225 8 0 chrX 76607747 76607876 -100366264 - FLAM_C SINE Alu -11 132 3 8086 222 51 72 chrX 76608094 76608473 -100365667 - L1PB3 LINE L1 -8 6203 5817 354 44 0 0 chrX 76608473 76608518 -100365622 - U5 snRNA snRNA -71 45 1 8086 222 51 72 chrX 76608518 76611365 -100362775 - L1PB3 LINE L1 -394 5817 2910 1439 210 10 21 chrX 76611365 76611656 -100362484 + AluJo SINE Alu 6 293 -19 8086 222 51 72 chrX 76611656 76612331 -100361809 - L1PB3 LINE L1 -3301 2910 2222 1947 146 7 10 chrX 76612331 76612633 -100361507 + AluJb SINE Alu 5 305 -7 8086 222 51 72 chrX 76612633 76612692 -100361448 - L1PB3 LINE L1 -3989 2222 2163 1203 241 7 7 chrX 76612692 76613017 -100361123 - AluJo SINE Alu 0 325 1 8086 222 51 72 chrX 76613017 76614512 -100359628 - L1PB3 LINE L1 -4048 2163 698 325 200 25 25 chrX 76614515 76614595 -100359545 - L1PB3 LINE L1 -5540 664 585 612 76 0 0 chrX 76614595 76614674 -100359466 - MSTA LTR MaLR -349 79 1 8600 190 25 5 chrX 76614674 76616292 -100357848 - MSTA-int LTR MaLR 0 1651 1 1711 209 103 3 chrX 76616314 76616692 -100357448 - MSTA LTR MaLR -12 416 1 2023 271 10 4 chrX 76616693 76617180 -100356960 - L1PB3 LINE L1 -5704 500 11 676 306 5 0 chrX 76617157 76617363 -100356777 - L1PBa LINE L1 -5226 978 772 * 296 340 5 12 chrX 76617653 76617839 -100356301 - L1M2 LINE L1 -6699 510 22 * 1871 325 36 51 chrX 76617826 76618202 -100355938 - L1PBa LINE L1 -5419 1443 1063 1787 164 4 0 chrX 76618202 76618476 -100355664 - AluSx SINE Alu -37 275 1 1871 325 36 51 chrX 76618476 76619626 -100354514 - L1PBa LINE L1 -5799 1063 39 357 260 35 0 chrX 76619755 76619924 -100354216 + (TA)n Simple_repeat Simple_repeat 2 176 0 26 50 0 0 chrX 76620041 76620081 -100354059 + AT_rich Low_complexity Low_complexity 1 40 0 538 252 0 9 chrX 76620085 76620200 -100353940 - FLAM_A SINE Alu -16 117 4 6413 144 25 15 chrX 76620334 76621385 -100352755 + THE1-int LTR MaLR 107 1167 -413 1408 209 22 25 chrX 76621388 76621708 -100352432 + THE1C LTR MaLR 54 372 -3 4876 217 16 6 chrX 76621711 76622853 -100351287 - L1P LINE L1 -2912 3234 2082 * 10353 206 31 19 chrX 76622839 76623644 -100350496 - L1M1 LINE L1 -743 5403 4609 1926 141 0 3 chrX 76623644 76623969 -100350171 + AluSq SINE Alu 3 326 0 10353 206 31 19 chrX 76623969 76625854 -100348286 - L1M1 LINE L1 -1537 4609 2772 22 0 0 0 chrX 76625854 76625876 -100348264 + AT_rich Low_complexity Low_complexity 1 22 0 1761 172 3 35 chrX 76625894 76626208 -100347932 + AluJo SINE Alu 1 304 -8 253 139 0 0 chrX 76626229 76626265 -100347875 - Alu SINE Alu -263 36 1 2484 232 40 55 chrX 76626272 76627255 -100346885 - L1M4 LINE L1 -2164 3982 3015 1409 222 10 26 chrX 76627255 76627557 -100346583 - AluJo SINE Alu -11 301 5 2484 232 40 55 chrX 76627557 76627662 -100346478 - L1M4 LINE L1 -3131 3015 2910 290 238 20 79 chrX 76627682 76627783 -100346357 - MLT1J2 LTR MaLR -289 161 67 203 281 0 18 chrX 76628007 76628064 -100346076 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 1603 189 4 25 chrX 76628581 76628862 -100345278 + AluJo SINE Alu 3 277 -35 203 0 37 0 chrX 76629018 76629045 -100345095 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 285 346 0 12 chrX 76629599 76629680 -100344460 - MER91B DNA MER1_type -110 80 1 279 79 0 0 chrX 76630545 76630583 -100343557 + (TA)n Simple_repeat Simple_repeat 2 39 0 1573 183 17 24 chrX 76630583 76630872 -100343268 - AluJb SINE Alu -20 292 6 506 239 151 21 chrX 76633076 76633300 -100340840 + MLT1F1 LTR MaLR 294 547 -2 322 315 45 0 chrX 76633352 76633441 -100340699 - MIR SINE MIR -74 134 42 1473 254 26 44 chrX 76633604 76633810 -100340330 - MLT1F LTR MaLR 0 542 334 2472 116 16 5 chrX 76633810 76634181 -100339959 - THE1C LTR MaLR 0 375 1 9286 131 31 40 chrX 76634181 76635775 -100338365 - THE1C-int LTR MaLR 0 1580 1 2206 152 14 5 chrX 76635777 76636146 -100337994 - THE1C LTR MaLR -2 373 2 1473 254 26 44 chrX 76636146 76636364 -100337776 - MLT1F LTR MaLR -208 334 122 539 211 64 75 chrX 76636872 76637138 -100337002 + HERVL40 LTR ERVL 625 887 -2150 407 213 313 33 chrX 76637346 76637557 -100336583 + HERVL40 LTR ERVL 2669 2938 -2592 948 237 40 4 chrX 76637702 76637930 -100336210 + HERVL40 LTR ERVL 4425 4660 -870 1133 250 59 68 chrX 76638001 76638425 -100335715 + HERVL40 LTR ERVL 2297 2716 -321 304 136 30 45 chrX 76638593 76638659 -100335481 + HERVL40 LTR ERVL 2719 2783 -254 746 269 55 12 chrX 76638726 76639044 -100335096 + HERVL40 LTR ERVL 2780 5503 -27 337 257 118 15 chrX 76639225 76639361 -100334779 - LTR68 LTR ERV1 -303 437 288 405 333 33 6 chrX 76639511 76639691 -100334449 - LTR68 LTR ERV1 -555 185 1 451 306 41 39 chrX 76639693 76639956 -100334184 - MLT1F-int LTR MaLR -878 493 215 840 255 72 50 chrX 76639966 76640519 -100333621 + LTR48B LTR ERV1 25 629 -15 265 313 10 0 chrX 76640560 76640659 -100333481 - MLT1F-int LTR MaLR -1270 101 2 821 281 14 0 chrX 76640696 76640906 -100333234 - MLT1F LTR MaLR -61 481 269 1130 218 45 87 chrX 76640924 76641414 -100332726 - MER39 LTR ERV1 -21 686 1 505 268 42 13 chrX 76641422 76641635 -100332505 - MLT1F LTR MaLR -280 262 1 13307 25 1 1 chrX 76641910 76643483 -100330657 - L1PA3 LINE L1 -951 5195 3623 7301 41 2 3 chrX 76643484 76644458 -100329682 + L1PA3 LINE L1 5178 6150 -5 813 161 0 0 chrX 76645787 76645911 -100328229 + FLAM_C SINE Alu 1 124 -9 389 341 93 16 chrX 76646332 76646514 -100327626 + MER91A DNA MER1_type 1 196 0 32 81 0 0 chrX 76646590 76646664 -100327476 + AT_rich Low_complexity Low_complexity 1 74 0 1575 184 13 67 chrX 76647538 76647851 -100326289 + MER92A LTR ERV1 57 349 -63 1868 125 3 21 chrX 76647851 76648179 -100325961 - AluSx SINE Alu 0 323 1 1575 184 13 67 chrX 76648179 76648240 -100325900 + MER92A LTR ERV1 349 412 0 2382 81 0 3 chrX 76649572 76649868 -100324272 + AluSc SINE Alu 1 295 -14 26 0 0 0 chrX 76649959 76649985 -100324155 + AT_rich Low_complexity Low_complexity 1 26 0 595 177 10 0 chrX 76650191 76650287 -100323853 - Tigger7 DNA MER2_type -1 2490 2394 1247 196 89 0 chrX 76650289 76650514 -100323626 - Tigger7 DNA MER2_type -470 263 19 575 120 0 60 chrX 76651076 76651176 -100322964 + LTR29 LTR ERV1 1 94 -528 * 1607 144 20 4 chrX 76651159 76651409 -100322731 + LTR29 LTR ERV1 369 622 0 1753 201 30 80 chrX 76651412 76652159 -100321981 + LTR29-int LTR ERV1 3 1610 -4653 784 179 75 71 chrX 76652158 76652410 -100321730 + LTR49-int LTR ERV1 771 1023 -5308 * 917 137 0 39 chrX 76652418 76652571 -100321569 - MER4D LTR ERV1 -9 894 748 1803 208 75 102 chrX 76652571 76653318 -100320822 - LTR8A LTR ERV1 0 727 1 2049 181 24 19 chrX 76653318 76653737 -100320403 - LTR8A LTR ERV1 -306 421 1 3242 191 26 39 chrX 76653744 76654486 -100319654 - MER4D LTR ERV1 -171 732 1 1259 215 74 15 chrX 76654512 76654838 -100319302 + LTR49-int LTR ERV1 1054 1398 -4933 1079 204 67 41 chrX 76654934 76655204 -100318936 + LTR49-int LTR ERV1 1392 1668 -4663 2252 163 10 20 chrX 76655204 76655603 -100318537 - MER57A LTR ERV1 -8 395 1 1620 88 118 0 chrX 76655604 76655842 -100318298 - MER57A-int LTR ERV1 -2 7535 7270 695 136 25 8 chrX 76655843 76655961 -100318179 - LTR54B LTR ERV1 -374 124 5 11363 87 12 0 chrX 76655961 76657734 -100316406 - MER57A-int LTR ERV1 -387 7150 5315 30956 120 18 20 chrX 76657734 76658702 -100315438 - MER57A-int LTR ERV1 -2331 5206 4237 1714 51 0 0 chrX 76658702 76658919 -100315221 + L1PA5 LINE L1 5938 6154 0 30956 120 18 20 chrX 76658919 76662886 -100311254 - MER57A-int LTR ERV1 -3300 4237 1 1928 194 20 20 chrX 76662886 76663289 -100310851 - MER57A LTR ERV1 0 403 1 362 162 10 50 chrX 76663309 76663408 -100310732 + LTR49-int LTR ERV1 1673 1767 -4564 434 236 19 38 chrX 76663471 76663577 -100310563 + LTR49-int LTR ERV1 2058 2161 -4170 8050 194 59 81 chrX 76663585 76666091 -100308049 + LTR49-int LTR ERV1 2595 5039 -1292 183 42 0 0 chrX 76666091 76666115 -100308025 + (TG)n Simple_repeat Simple_repeat 1 24 0 8050 194 59 81 chrX 76666115 76666284 -100307856 + LTR49-int LTR ERV1 5039 5210 -1121 2547 233 44 2 chrX 76666284 76666916 -100307224 + L1 LINE L1 4497 5155 -991 * 3968 248 63 41 chrX 76666904 76668455 -100305685 + L1MB7 LINE L1 3546 5137 -1009 221 56 0 28 chrX 76668455 76668491 -100305649 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3968 248 63 41 chrX 76668491 76668580 -100305560 + L1MB7 LINE L1 5137 5223 -923 2977 196 42 3 chrX 76668600 76669242 -100304898 + L1MB7 LINE L1 5256 5922 -262 3195 74 2 0 chrX 76669242 76669645 -100304495 + MLT2A1 LTR ERVL 1 404 -40 260 155 0 17 chrX 76669645 76669703 -100304437 + (TA)n Simple_repeat Simple_repeat 2 58 0 308 85 0 68 chrX 76669755 76669814 -100304326 + MLT2A1 LTR ERVL 390 444 0 1453 80 0 5 chrX 76669814 76670013 -100304127 + HERVL-A1 LTR ERVL 1 198 -5456 1888 112 7 14 chrX 76670013 76670289 -100303851 + AluSx SINE Alu 19 292 -20 318 47 0 0 chrX 76670562 76670605 -100303535 + MADE1 DNA Mariner 38 80 0 3371 269 39 23 chrX 76670605 76672156 -100301984 - L1M4c LINE L1 -4560 2086 519 255 31 0 0 chrX 76672157 76672189 -100301951 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 5266 49 22 10 chrX 76672200 76672877 -100301263 - L1PA7 LINE L1 -5 6149 5465 3125 71 57 0 chrX 76672877 76673299 -100300841 + L1P LINE L1 3953 4398 -1748 1369 284 70 21 chrX 76673293 76673762 -100300378 - L1M4c LINE L1 -6018 524 33 * 21 71 0 0 chrX 76673796 76673838 -100300302 + AT_rich Low_complexity Low_complexity 1 42 0 840 202 0 22 chrX 76674184 76674362 -100299778 - AluJb SINE Alu -1 311 138 872 338 58 8 chrX 76674765 76675162 -100298978 + ERVL LTR ERVL 2083 2499 -3265 * 1195 308 30 17 chrX 76675154 76675727 -100298413 + ERVL LTR ERVL 3351 3982 -1782 1278 214 50 70 chrX 76675756 76676154 -100297986 + MLT1B LTR MaLR 1 390 0 411 205 12 0 chrX 76676154 76676237 -100297903 + MLT1B-int LTR MaLR 1 84 -1287 878 190 0 65 chrX 76677286 76677470 -100296670 + AluJ SINE Alu 7 178 -134 1994 139 0 23 chrX 76677495 76677805 -100296335 - AluSx SINE Alu -9 303 1 622 184 18 0 chrX 76677840 76677949 -100296191 + AluJ SINE Alu 169 279 -33 207 0 0 0 chrX 76677958 76677981 -100296159 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 387 361 46 48 chrX 76678246 76678639 -100295501 + HAL1 LINE L1 1025 1416 -1091 281 279 12 0 chrX 76678784 76678870 -100295270 - MLT1J2 LTR MaLR -23 427 341 238 213 47 93 chrX 76679141 76679291 -100294849 - HAL1 LINE L1 -1359 1148 1006 307 298 53 18 chrX 76679552 76679780 -100294360 + L1ME LINE L1 4417 4652 -1494 308 322 26 0 chrX 76679847 76679962 -100294178 - L1MC/D LINE L1 -907 5452 5335 23 68 0 0 chrX 76679974 76680018 -100294122 + AT_rich Low_complexity Low_complexity 1 44 0 235 194 15 15 chrX 76680018 76680085 -100294055 + T-rich Low_complexity Low_complexity 3 69 0 506 261 92 11 chrX 76680125 76680444 -100293696 + L1ME LINE L1 5130 5474 -688 296 233 33 33 chrX 76680462 76680582 -100293558 - L1M4c LINE L1 -3069 3313 3194 10835 177 40 50 chrX 76680616 76681378 -100292762 - L1PBa LINE L1 -4466 2397 1629 2377 74 3 3 chrX 76681378 76681689 -100292451 - AluY SINE Alu 0 311 1 10835 177 40 50 chrX 76681689 76683347 -100290793 - L1PBa LINE L1 -5234 1629 1 496 325 149 54 chrX 76683494 76684076 -100290064 - L1M4c LINE L1 -4512 1870 1345 705 171 0 0 chrX 76684076 76684205 -100289935 - L1MA10 LINE L1 0 6334 6206 496 325 149 54 chrX 76684205 76684475 -100289665 - L1M4c LINE L1 -5037 1345 803 906 377 30 21 chrX 76684824 76685392 -100288748 + ERVL LTR ERVL 2020 2592 -3172 1037 251 8 8 chrX 76685501 76685736 -100288404 - MER74C LTR ERVL -26 434 200 2167 137 91 8 chrX 76685752 76686146 -100287994 - MSTA LTR MaLR 0 428 2 6484 164 8 38 chrX 76686147 76687338 -100286802 - MSTA-int LTR MaLR 0 1580 426 234 230 46 35 chrX 76687648 76687735 -100286405 - HAL1 LINE L1 -1026 1481 1394 505 292 130 9 chrX 76687760 76688075 -100286065 - L1MEd LINE L1 -4862 1257 905 1916 141 10 3 chrX 76688164 76688461 -100285679 - AluSc SINE Alu -10 299 1 277 368 86 25 chrX 76688669 76688984 -100285156 - L1MEd LINE L1 -5538 581 248 24 0 0 0 chrX 76689047 76689071 -100285069 + AT_rich Low_complexity Low_complexity 1 24 0 306 325 27 53 chrX 76689088 76689276 -100284864 - L1MEd LINE L1 -5918 201 19 21 0 0 0 chrX 76689288 76689309 -100284831 + AT_rich Low_complexity Low_complexity 1 21 0 201 146 0 0 chrX 76690545 76690593 -100283547 + (TA)n Simple_repeat Simple_repeat 2 49 0 228 250 0 0 chrX 76690624 76690688 -100283452 - L1MC4 LINE L1 -1339 6703 6640 301 89 0 36 chrX 76690752 76690808 -100283332 - LTR66 LTR ERVL -163 447 394 305 267 11 11 chrX 76690865 76690955 -100283185 + L1MC4 LINE L1 6616 6705 -1337 3812 139 65 63 chrX 76691369 76692152 -100281988 - LTR1 LTR ERV1 0 785 1 24 0 0 0 chrX 76692387 76692411 -100281729 + AT_rich Low_complexity Low_complexity 1 24 0 1383 195 0 21 chrX 76692637 76692919 -100281221 + AluJo SINE Alu 21 296 -16 206 179 18 0 chrX 76693228 76693284 -100280856 + (TA)n Simple_repeat Simple_repeat 2 58 0 27 49 0 0 chrX 76693900 76693941 -100280199 + AT_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chrX 76694158 76694201 -100279939 + AT_rich Low_complexity Low_complexity 1 43 0 526 290 125 13 chrX 76694570 76694794 -100279346 - MIR SINE MIR -13 249 1 24 53 0 0 chrX 76695629 76695667 -100278473 + AT_rich Low_complexity Low_complexity 1 38 0 4312 43 2 0 chrX 76696229 76696761 -100277379 + L1PA4 LINE L1 5621 6153 -2 25 31 0 0 chrX 76697104 76697136 -100277004 + AT_rich Low_complexity Low_complexity 1 32 0 369 303 48 69 chrX 76697256 76697444 -100276696 - MIR SINE MIR -45 217 34 350 285 95 15 chrX 76697433 76697570 -100276570 + MIR3 SINE MIR 60 207 -1 * 1040 239 11 21 chrX 76697612 76697892 -100276248 - L1MD2 LINE L1 -5 6354 6078 1821 129 0 14 chrX 76697924 76698202 -100275938 - THE1C LTR MaLR 0 375 102 8955 137 60 4 chrX 76698206 76699702 -100274438 - THE1C-int LTR MaLR 0 1580 1 2276 147 22 3 chrX 76699702 76700070 -100274070 - THE1C LTR MaLR 0 375 1 2049 259 68 24 chrX 76700071 76701041 -100273099 - L1M4 LINE L1 -2466 3680 2668 757 225 12 0 chrX 76701035 76701208 -100272932 + L1 LINE L1 4559 4733 -1413 * 462 171 12 0 chrX 76701199 76701281 -100272859 - L1PA13 LINE L1 -230 5933 5851 * 1231 232 39 73 chrX 76701289 76701599 -100272541 + L1 LINE L1 4716 5006 -1140 1208 227 70 3 chrX 76701599 76701711 -100272429 + AluJo SINE Alu 1 104 -208 356 0 0 22 chrX 76701711 76701756 -100272384 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 1208 227 70 3 chrX 76701756 76701929 -100272211 + AluJo SINE Alu 104 305 -7 1231 232 39 73 chrX 76701929 76702084 -100272056 + L1 LINE L1 5006 5165 -981 2778 172 17 4 chrX 76702089 76702609 -100271531 - L1MA2 LINE L1 0 6304 5775 1883 167 0 10 chrX 76702609 76702921 -100271219 - AluSx SINE Alu -3 309 1 18514 216 33 51 chrX 76702930 76710690 -100263450 - L1PA13 LINE L1 -12 7589 1 13190 195 19 28 chrX 76710666 76711667 -100262473 - L1M1 LINE L1 -500 7242 6234 * 2233 109 0 0 chrX 76711667 76711970 -100262170 - AluSc SINE Alu -3 306 4 13190 195 19 28 chrX 76711970 76715388 -100258752 - L1M1 LINE L1 -1508 6234 2861 351 113 0 0 chrX 76715389 76715442 -100258698 + (TA)n Simple_repeat Simple_repeat 2 54 0 5031 83 6 3 chrX 76715444 76716132 -100258008 - L1PA7 LINE L1 -7 6147 5458 891 82 0 49 chrX 76716132 76716315 -100257825 + (TA)n Simple_repeat Simple_repeat 1 174 0 3081 110 7 0 chrX 76716393 76716821 -100257319 + MER57B LTR ERV1 1 431 -3 952 263 43 66 chrX 76716828 76717223 -100256917 - MER97c DNA MER1_type? -703 387 2 527 129 52 0 chrX 76717273 76717389 -100256751 + CT-rich Low_complexity Low_complexity 3 124 0 240 299 49 49 chrX 76717510 76717654 -100256486 - MIR SINE MIR -48 214 71 207 191 32 16 chrX 76717864 76717927 -100256213 + (TAA)n Simple_repeat Simple_repeat 3 66 0 420 307 33 13 chrX 76718201 76718351 -100255789 - MLT2E LTR ERVL -475 153 1 22 35 0 0 chrX 76718847 76718876 -100255264 + AT_rich Low_complexity Low_complexity 1 29 0 1038 191 100 20 chrX 76719325 76719576 -100254564 + MSTD-int LTR MaLR 1462 1732 -3 1195 250 68 45 chrX 76719579 76719959 -100254181 + MSTD LTR MaLR 1 389 -7 46 54 0 0 chrX 76720494 76720568 -100253572 + AT_rich Low_complexity Low_complexity 1 74 0 501 280 153 6 chrX 76721925 76722082 -100252058 + MER5A DNA MER1_type 9 188 -1 291 54 0 0 chrX 76722687 76722724 -100251416 + (CA)n Simple_repeat Simple_repeat 1 37 0 548 287 49 6 chrX 76723732 76723896 -100250244 + LTR50 LTR ERVL 11 181 -614 658 259 144 0 chrX 76724092 76724328 -100249812 + LTR50 LTR ERVL 515 784 -11 384 281 33 25 chrX 76725069 76725190 -100248950 + MLT1H LTR MaLR 412 533 -16 309 68 0 0 chrX 76725316 76725360 -100248780 + (TG)n Simple_repeat Simple_repeat 2 45 0 182 344 54 86 chrX 76725443 76725536 -100248604 + MIR SINE MIR 32 121 -87 10582 89 3 0 chrX 76726000 76728258 -100245882 + L1PA7 LINE L1 3876 6149 -5 532 252 22 0 chrX 76729081 76729216 -100244924 + HsTC2 DNA Tc2 6 143 -1755 982 284 71 11 chrX 76729235 76729601 -100244539 + HsTC2 DNA Tc2 1281 1668 -230 2210 174 5 47 chrX 76729601 76730031 -100244109 + L1PA15 LINE L1 5657 6068 -97 988 171 6 0 chrX 76730031 76730195 -100243945 + MSTB1 LTR MaLR 268 432 0 216 163 0 0 chrX 76730261 76730304 -100243836 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 289 0 0 chrX 76730535 76730580 -100243560 + L2 LINE L2 3261 3305 -8 23 0 0 0 chrX 76731557 76731580 -100242560 + AT_rich Low_complexity Low_complexity 1 23 0 1307 188 92 7 chrX 76731605 76731876 -100242264 + AluJo SINE Alu 1 294 -18 1204 329 63 58 chrX 76732712 76733012 -100241128 + MER45C DNA AcHobo 10 307 -646 3055 126 16 14 chrX 76733012 76733522 -100240618 + MER9 LTR ERVK 1 511 0 1204 329 63 58 chrX 76733522 76733842 -100240298 + MER45C DNA AcHobo 307 633 -320 270 214 0 36 chrX 76733838 76733894 -100240246 + MER45C DNA AcHobo 900 953 0 * 399 301 68 41 chrX 76733951 76734170 -100239970 + L3 LINE CR1 1351 1575 -2 46 68 0 0 chrX 76734410 76734498 -100239642 + AT_rich Low_complexity Low_complexity 1 88 0 2296 257 81 30 chrX 76735516 76736380 -100237760 - L1ME3A LINE L1 -8 6162 5255 1382 89 5 0 chrX 76737733 76737935 -100236205 + L1PA13 LINE L1 5961 6163 0 862 153 74 0 chrX 76738324 76738500 -100235640 - MER53 DNA DNA 0 189 1 382 292 107 38 chrX 76738562 76738761 -100235379 + MIR SINE MIR 3 208 -52 293 287 7 0 chrX 76739112 76739248 -100234892 + (TA)n Simple_repeat Simple_repeat 2 138 0 12619 200 98 24 chrX 76739338 76740791 -100233349 - L1MA5 LINE L1 -4 6611 5268 2027 154 28 30 chrX 76740791 76741154 -100232986 - THE1B LTR MaLR 0 364 3 12619 200 98 24 chrX 76741154 76742283 -100231857 - L1MA5 LINE L1 -1347 5268 4225 1693 166 7 11 chrX 76742283 76742592 -100231548 - AluSx SINE Alu 0 310 3 12619 200 98 24 chrX 76742592 76744857 -100229283 - L1MA5 LINE L1 -2390 4225 2130 183 42 0 0 chrX 76744857 76744881 -100229259 + (TTG)n Simple_repeat Simple_repeat 1 24 0 12619 200 98 24 chrX 76744881 76746084 -100228056 - L1MA5 LINE L1 -4485 2130 15 1957 163 145 40 chrX 76746103 76746599 -100227541 - LTR10A LTR ERV1 -61 548 1 427 246 8 8 chrX 76746829 76746947 -100227193 + HUERS-P1 LTR ERV1 3460 3577 -2686 27 87 0 0 chrX 76746947 76747016 -100227124 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chrX 76747053 76747076 -100227064 + AT_rich Low_complexity Low_complexity 1 23 0 1139 132 26 0 chrX 76747101 76747290 -100226850 + L1PB1 LINE L1 5 198 -6665 * 12127 179 22 12 chrX 76747287 76753233 -100220907 + L1PB1 LINE L1 904 6865 -2 28 0 0 0 chrX 76753238 76753266 -100220874 + AT_rich Low_complexity Low_complexity 1 28 0 6777 211 76 50 chrX 76753278 76753822 -100220318 + HUERS-P1 LTR ERV1 3823 4351 -1980 1786 232 28 76 chrX 76753822 76754400 -100219740 + MLT2B3 LTR ERVL 2 551 -3 6777 211 76 50 chrX 76754400 76755692 -100218448 + HUERS-P1 LTR ERV1 4351 5734 -597 2281 102 0 10 chrX 76755692 76756005 -100218135 - AluSg SINE Alu 0 310 1 6777 211 76 50 chrX 76756005 76756451 -100217689 + HUERS-P1 LTR ERV1 5734 6167 -164 180 0 0 0 chrX 76756507 76756527 -100217613 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 554 126 0 32 chrX 76756529 76756624 -100217516 - AluSg/x SINE Alu -32 280 189 1039 218 5 0 chrX 76756624 76756821 -100217319 + LTR48B LTR ERV1 435 632 -12 1399 216 83 6 chrX 76756830 76757192 -100216948 - MER63C DNA MER1_type -532 398 9 270 0 0 0 chrX 76757539 76757569 -100216571 + (TG)n Simple_repeat Simple_repeat 2 31 0 600 166 283 0 chrX 76758723 76758868 -100215272 + MER5A DNA MER1_type 2 187 -2 2099 177 29 8 chrX 76758882 76759260 -100214880 - MER61D LTR ERV1 0 501 116 256 206 55 14 chrX 76759268 76759341 -100214799 - LTR28 LTR ERV1 -944 76 1 1823 128 45 7 chrX 76759341 76759630 -100214510 - LTR28-int LTR ERV1 0 5217 4918 2228 138 11 6 chrX 76759633 76759980 -100214160 - LTR28-int LTR ERV1 -1224 3993 3645 1611 147 4 0 chrX 76759986 76760231 -100213909 - AluSx SINE Alu -64 248 3 8757 160 36 26 chrX 76760231 76764185 -100209955 - MER61D-int LTR ERV1 -390 4827 400 2124 125 3 0 chrX 76764185 76764480 -100209660 - AluSg SINE Alu -14 296 1 8757 160 36 26 chrX 76764480 76764639 -100209501 - MER61D-int LTR ERV1 -4817 400 244 274 213 125 0 chrX 76764819 76764899 -100209241 - MER61D-int LTR ERV1 -6593 498 409 420 295 23 8 chrX 76764922 76765051 -100209089 - MER61D-int LTR ERV1 -5068 149 19 1868 162 220 5 chrX 76765068 76765450 -100208690 - MER61D LTR ERV1 0 501 38 306 174 58 0 chrX 76765417 76765486 -100208654 - LTR28 LTR ERV1 -947 73 1 * 206 301 24 24 chrX 76766230 76766313 -100207827 - MIR3 SINE MIR 0 208 126 24 32 0 0 chrX 76767317 76767348 -100206792 + AT_rich Low_complexity Low_complexity 1 31 0 786 276 0 0 chrX 76767869 76768043 -100206097 + MER41D LTR ERV1 384 557 0 1940 140 33 0 chrX 76768098 76768398 -100205742 - AluSx SINE Alu -2 310 1 514 304 25 21 chrX 76769208 76769418 -100204722 - MIR SINE MIR -52 210 3 3341 224 118 18 chrX 76770755 76771322 -100202818 + L1MC4 LINE L1 6460 6968 -1074 180 77 0 0 chrX 76771322 76771348 -100202792 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3341 224 118 18 chrX 76771348 76771752 -100202388 + L1MC4 LINE L1 6968 7529 -513 1431 228 92 28 chrX 76771752 76772186 -100201954 - MLT1C LTR MaLR 0 467 6 526 195 8 0 chrX 76772190 76772308 -100201832 + L1MC4 LINE L1 7524 7642 -400 343 248 106 80 chrX 76772308 76772806 -100201334 + MER34B LTR ERV1 5 565 0 856 261 69 0 chrX 76772807 76773025 -100201115 + L1MC4 LINE L1 7635 7867 -175 37 0 0 0 chrX 76773054 76773091 -100201049 + AT_rich Low_complexity Low_complexity 1 37 0 3416 65 2 2 chrX 76773190 76773638 -100200502 + LTR7 LTR ERV1 1 448 -2 2288 106 7 0 chrX 76773965 76774266 -100199874 + AluSg SINE Alu 3 305 -5 21 36 0 0 chrX 76774905 76774933 -100199207 + AT_rich Low_complexity Low_complexity 1 28 0 519 268 128 8 chrX 76775022 76775257 -100198883 - L1M4 LINE L1 -920 5226 4964 3951 266 30 6 chrX 76775369 76776642 -100197498 - L1M4 LINE L1 -1471 4675 3373 844 155 14 0 chrX 76776656 76776804 -100197336 + MLT2D LTR ERVL 1 150 -264 274 275 148 7 chrX 76776807 76776949 -100197191 - L1MCa LINE L1 -4095 2331 2170 4879 239 22 19 chrX 76777014 76777780 -100196360 + L1P LINE L1 1432 2353 -3793 1784 133 56 0 chrX 76777780 76778065 -100196075 + AluSp SINE Alu 7 307 -6 4879 239 22 19 chrX 76778065 76778671 -100195469 + L1P LINE L1 2353 2956 -3190 5543 141 9 2 chrX 76778671 76779843 -100194297 + L1PA15 LINE L1 4975 6155 -10 236 261 0 0 chrX 76779893 76779958 -100194182 - L1M LINE L1 -783 5381 5317 24 0 0 0 chrX 76779958 76779982 -100194158 + AT_rich Low_complexity Low_complexity 1 24 0 1922 95 59 59 chrX 76780410 76780716 -100193424 - AluSg1 SINE Alu -3 306 1 3462 219 51 11 chrX 76780937 76781966 -100192174 - L1MB7 LINE L1 -19 6165 5107 275 248 32 16 chrX 76782331 76782456 -100191684 + (TA)n Simple_repeat Simple_repeat 2 128 0 931 221 6 0 chrX 76782653 76782825 -100191315 - MER2 DNA MER2_type -172 173 1 358 85 85 0 chrX 76783027 76783156 -100190984 + (TA)n Simple_repeat Simple_repeat 2 141 0 484 125 39 29 chrX 76783168 76783456 -100190684 + (TA)n Simple_repeat Simple_repeat 1 291 0 22 0 0 0 chrX 76790125 76790147 -100183993 + AT_rich Low_complexity Low_complexity 1 22 0 182 60 60 20 chrX 76790161 76790211 -100183929 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chrX 76790642 76790663 -100183477 + AT_rich Low_complexity Low_complexity 1 21 0 236 300 82 18 chrX 76791756 76791866 -100182274 + MER117 DNA MER1_type 1 117 -80 266 262 287 8 chrX 76792084 76792206 -100181934 - MIR SINE MIR -7 255 100 978 137 5 63 chrX 76793829 76793992 -100180148 + MER34 LTR ERV1 11 163 -379 2545 116 6 3 chrX 76793992 76794355 -100179785 + THE1B LTR MaLR 1 364 0 978 137 5 63 chrX 76794355 76794381 -100179759 + MER34 LTR ERV1 163 189 -353 771 257 44 75 chrX 76794517 76794836 -100179304 + L2 LINE L2 3005 3313 0 2020 108 7 4 chrX 76794994 76795272 -100178868 + AluSx SINE Alu 3 281 -31 491 0 0 17 chrX 76795275 76795335 -100178805 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 22 70 0 0 chrX 76795540 76795583 -100178557 + AT_rich Low_complexity Low_complexity 1 43 0 312 288 97 44 chrX 76795777 76796003 -100178137 - L1MC/D LINE L1 -844 5515 5278 708 278 17 0 chrX 76796277 76796457 -100177683 + MER5A DNA MER1_type 2 184 -5 1928 200 19 17 chrX 76796576 76797028 -100177112 + MER89 LTR ERV1 6 559 0 21 0 0 0 chrX 76797846 76797867 -100176273 + AT_rich Low_complexity Low_complexity 1 21 0 1999 99 27 20 chrX 76798190 76798484 -100175656 - AluY SINE Alu -15 296 1 252 298 42 73 chrX 76798613 76798804 -100175336 + MLT1K LTR MaLR 401 585 -3 2764 3 0 0 chrX 76798844 76799145 -100174995 - AluYa5 SINE Alu -10 301 1 249 293 0 0 chrX 76799529 76799587 -100174553 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 280 161 36 0 chrX 76799897 76799953 -100174187 + Alu SINE Alu 244 301 0 28 0 0 0 chrX 76799986 76800014 -100174126 + AT_rich Low_complexity Low_complexity 1 28 0 1396 265 31 29 chrX 76800047 76800500 -100173640 + MER31B LTR ERV1 13 466 0 245 222 16 0 chrX 76800512 76800575 -100173565 - L1ME1 LINE L1 -86 6080 6017 25 31 0 0 chrX 76800588 76800620 -100173520 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chrX 76802027 76802060 -100172080 + AT_rich Low_complexity Low_complexity 1 33 0 2351 92 3 0 chrX 76802650 76802956 -100171184 - AluY SINE Alu -4 307 1 240 86 0 0 chrX 76803709 76803744 -100170396 + (TG)n Simple_repeat Simple_repeat 2 36 0 2137 93 3 7 chrX 76803814 76804105 -100170035 + AluSq SINE Alu 1 290 -23 189 325 48 36 chrX 76804217 76804300 -100169840 + L2 LINE L2 3189 3272 0 187 284 40 14 chrX 76804377 76804451 -100169689 - MIR3 SINE MIR -3 205 130 2198 181 31 5 chrX 76804452 76804873 -100169267 + MSTB1 LTR MaLR 1 432 0 210 358 92 17 chrX 76805286 76805459 -100168681 - L2 LINE L2 -427 2887 2702 452 250 56 19 chrX 76805523 76805683 -100168457 - HAL1 LINE L1 -131 2376 2211 521 316 6 6 chrX 76805732 76805890 -100168250 + LTR16B LTR ERVL 2 159 -305 304 305 12 0 chrX 76805894 76805976 -100168164 - Charlie1 DNA MER1_type -2678 83 1 227 125 0 0 chrX 76806056 76806088 -100168052 - Tigger1 DNA MER2_type 0 2418 2387 * 568 171 0 18 chrX 76806086 76806197 -100167943 + MSTB1 LTR MaLR 172 280 -152 * 12857 164 25 15 chrX 76806196 76807396 -100166744 - Tigger1 DNA MER2_type -30 2388 1154 2825 7 0 0 chrX 76807396 76807701 -100166439 - AluYa5 SINE Alu -6 305 1 12857 164 25 15 chrX 76807701 76808822 -100165318 - Tigger1 DNA MER2_type -1264 1154 45 1827 294 27 13 chrX 76808844 76809464 -100164676 + L1MA4A LINE L1 1 629 -6580 233 147 0 0 chrX 76809470 76809504 -100164636 + L1MA4A LINE L1 998 1031 -6178 1931 166 12 0 chrX 76810030 76810356 -100163784 + L1PB3 LINE L1 5825 6154 0 28 0 0 0 chrX 76810360 76810388 -100163752 + AT_rich Low_complexity Low_complexity 1 28 0 4897 189 64 7 chrX 76810406 76812430 -100161710 + L1MA4A LINE L1 5211 7350 -15 366 169 0 0 chrX 76812451 76812510 -100161630 - Tigger1 DNA MER2_type -2359 59 1 190 375 93 32 chrX 76812511 76812727 -100161413 - L2 LINE L2 -642 2672 2444 372 357 55 11 chrX 76813691 76813873 -100160267 + L3 LINE CR1 1379 1568 -9 527 366 4 9 chrX 76813923 76814155 -100159985 + L2 LINE L2 2160 2390 -924 326 315 16 8 chrX 76814244 76814371 -100159769 - MER91B DNA MER1_type -61 129 2 546 319 74 56 chrX 76814386 76814725 -100159415 + L2 LINE L2 2384 2728 -586 456 331 160 27 chrX 76815394 76815887 -100158253 + L2 LINE L2 2737 3300 -13 2183 92 34 0 chrX 76816198 76816491 -100157649 - AluY SINE Alu -8 303 1 245 300 55 27 chrX 76816492 76816602 -100157538 - L2 LINE L2 -22 3291 3179 1473 188 193 0 chrX 76816784 76817146 -100156994 + MER66A LTR ERV1 2 433 -45 22 0 0 0 chrX 76817763 76817785 -100156355 + AT_rich Low_complexity Low_complexity 1 22 0 1425 175 48 0 chrX 76818325 76818576 -100155564 - Tigger3(Golem) DNA MER2_type 0 3037 2775 1110 184 138 30 chrX 76819402 76819706 -100154434 - L1MC3 LINE L1 -21 7764 7428 2394 51 0 10 chrX 76819717 76820011 -100154129 - AluY SINE Alu -20 291 1 1379 248 124 13 chrX 76820012 76820407 -100153733 + MER31B LTR ERV1 7 445 -21 2401 181 22 55 chrX 76820410 76820917 -100153223 + MLT2B1 LTR ERVL 21 510 -10 4139 219 45 20 chrX 76820949 76821986 -100152154 - L1MC3 LINE L1 -352 7433 6371 2234 153 48 10 chrX 76821986 76822398 -100151742 + MSTA LTR MaLR 1 428 0 8756 184 22 7 chrX 76822398 76824025 -100150115 + MSTA-int LTR MaLR 1 1651 0 1945 152 53 6 chrX 76824028 76824370 -100149770 + MSTA LTR MaLR 4 361 -67 308 222 0 56 chrX 76824370 76824460 -100149680 - L1MC4 LINE L1 -1344 6698 6614 21 0 0 0 chrX 76824464 76824485 -100149655 + AT_rich Low_complexity Low_complexity 1 21 0 375 121 0 0 chrX 76824485 76824543 -100149597 + (CA)n Simple_repeat Simple_repeat 2 59 0 343 115 0 0 chrX 76824545 76824597 -100149543 + MSTA LTR MaLR 377 428 0 4167 227 39 36 chrX 76824620 76825449 -100148691 - L1MC3 LINE L1 -748 5398 4573 6628 57 0 6 chrX 76825449 76826288 -100147852 + L1PA6 LINE L1 5321 6154 0 4167 227 39 36 chrX 76826288 76826315 -100147825 - L1MC3 LINE L1 -1573 4573 4548 1357 180 36 86 chrX 76826315 76826699 -100147441 - MLT1A1 LTR MaLR 0 365 1 4167 227 39 36 chrX 76826699 76827537 -100146603 - L1MC3 LINE L1 -1598 4548 4656 1937 157 0 0 chrX 76827537 76827837 -100146303 + AluSx SINE Alu 1 300 -12 4167 227 39 36 chrX 76827837 76828106 -100146034 - L1MC3 LINE L1 -1489 4657 4390 3036 150 85 5 chrX 76828174 76828760 -100145380 - L1PA16 LINE L1 -2 6164 5532 1912 206 28 65 chrX 76828761 76829292 -100144848 + MLT2B3 LTR ERVL 1 398 -55 8492 54 6 0 chrX 76829292 76831144 -100142996 - L1PA5 LINE L1 0 6154 4291 1803 29 0 0 chrX 76831154 76831363 -100142777 + L1P LINE L1 4037 4245 -1901 482 137 13 3 chrX 76831364 76831467 -100142673 + MLT2A2 LTR ERVL 386 453 0 3784 201 13 11 chrX 76831467 76832549 -100141591 - L1PA16 LINE L1 -631 5535 4448 186 71 0 0 chrX 76832549 76832577 -100141563 + (TG)n Simple_repeat Simple_repeat 1 28 0 3784 201 13 11 chrX 76832577 76832617 -100141523 - L1PA16 LINE L1 -1718 4448 4410 966 251 43 16 chrX 76832740 76833247 -100140893 - L1MC3 LINE L1 -2877 3269 2749 644 288 31 31 chrX 76833275 76833501 -100140639 + L1M4 LINE L1 24 249 -6293 9620 208 17 16 chrX 76833672 76834315 -100139825 + L1 LINE L1 17 658 -6907 2202 122 3 0 chrX 76834315 76834618 -100139522 + AluSq SINE Alu 1 304 -9 9620 208 17 16 chrX 76834618 76835300 -100138840 + L1 LINE L1 658 1347 -6218 189 0 0 0 chrX 76835300 76835321 -100138819 + (TGG)n Simple_repeat Simple_repeat 1 21 0 9620 208 17 16 chrX 76835321 76835907 -100138233 + L1 LINE L1 1347 1931 -5634 959 192 4 73 chrX 76835909 76835998 -100138142 + L1 LINE L1 5235 5329 -2236 2350 98 0 0 chrX 76835998 76836303 -100137837 + AluSg SINE Alu 1 305 -5 959 192 4 73 chrX 76836303 76836458 -100137682 + L1 LINE L1 5329 5462 -2103 243 143 0 0 chrX 76836459 76836494 -100137646 + MER61E LTR ERV1 531 565 -4 1639 272 53 33 chrX 76836507 76837304 -100136836 - L1ME3A LINE L1 -180 5990 5176 44 56 0 0 chrX 76839246 76839318 -100134822 + AT_rich Low_complexity Low_complexity 1 72 0 393 315 27 0 chrX 76839594 76839705 -100134435 - LTR16C LTR ERVL -314 177 64 259 208 208 9 chrX 76839815 76839921 -100134219 + MIR SINE MIR 122 248 -14 33 66 0 0 chrX 76840129 76840190 -100133950 + AT_rich Low_complexity Low_complexity 1 61 0 488 348 105 20 chrX 76840669 76841020 -100133120 + L2 LINE L2 2295 2675 -639 253 282 70 0 chrX 76841024 76841095 -100133045 + L2 LINE L2 3228 3303 -10 552 354 32 59 chrX 76841309 76841750 -100132390 + L2 LINE L2 2844 3272 0 1100 320 27 19 chrX 76841851 76842264 -100131876 + LTR16A LTR ERVL 30 445 -5 258 236 18 0 chrX 76842425 76842480 -100131660 + MER39 LTR ERV1 1 56 -651 * 845 261 71 47 chrX 76842475 76842839 -100131301 + MER39 LTR ERV1 335 707 0 248 283 74 30 chrX 76843326 76843460 -100130680 + LTR33A LTR ERVL 294 433 -88 191 167 24 0 chrX 76844635 76844677 -100129463 + CT-rich Low_complexity Low_complexity 2 44 0 4375 175 18 44 chrX 76845137 76846101 -100128039 - L1MA10 LINE L1 0 6334 5396 408 240 202 0 chrX 76846105 76846234 -100127906 + MER50 LTR ERV1 14 168 -566 1482 222 89 40 chrX 76846298 76846748 -100127392 + MER50 LTR ERV1 241 712 -22 3405 216 20 45 chrX 76846764 76847762 -100126378 - L1MA10 LINE L1 -745 5401 4443 1920 142 58 18 chrX 76847762 76848092 -100126048 - MER61A LTR ERV1 0 343 1 3405 216 20 45 chrX 76848092 76848103 -100126037 - L1MA10 LINE L1 -1703 4443 4433 19793 100 17 24 chrX 76848103 76850728 -100123412 - MER61A-int LTR ERV1 -11 5206 2600 5264 85 7 0 chrX 76850728 76851411 -100122729 - LTR12 LTR ERV1 0 688 1 19793 100 17 24 chrX 76851411 76851717 -100122423 - MER61A-int LTR ERV1 -2617 2600 2294 271 167 65 29 chrX 77051723 77051861 -99922279 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 400 265 17 2 chrX 77052176 77052298 -99921842 - MER5A DNA MER1_type -51 138 3 431 225 0 17 chrX 77052482 77052602 -99921538 + L1M2 LINE L1 5402 5519 -778 217 184 20 0 chrX 77052897 77052946 -99921194 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 2647 228 36 46 chrX 77053097 77054168 -99919972 + L1MA6 LINE L1 5289 6300 0 1200 196 34 44 chrX 77054976 77055359 -99918781 + Tigger2 DNA MER2_type 2 380 -2338 1517 222 13 3 chrX 77055365 77055667 -99918473 + AluJb SINE Alu 7 311 -1 1572 206 16 32 chrX 77055726 77056099 -99918041 + Tigger2 DNA MER2_type 365 731 -1987 482 231 0 60 chrX 77056120 77056237 -99917903 - FRAM SINE Alu -19 157 48 5531 209 38 33 chrX 77056421 77057207 -99916933 + L1P LINE L1 2059 2857 -3289 2044 132 3 0 chrX 77057207 77057495 -99916645 + AluSc SINE Alu 1 289 -20 5531 209 38 33 chrX 77057495 77058241 -99915899 + L1P LINE L1 2857 3598 -2548 6596 80 3 1 chrX 77058256 77059968 -99914172 + L1PA7 LINE L1 4440 6151 -3 21 0 0 0 chrX 77059970 77059991 -99914149 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chrX 77060800 77060834 -99913306 + AT_rich Low_complexity Low_complexity 1 34 0 617 215 7 14 chrX 77061299 77061467 -99912673 - L1MB3 LINE L1 -88 6095 5930 277 244 13 0 chrX 77062398 77062476 -99911664 + MER116 DNA Mariner 1 79 -1 817 275 83 33 chrX 77062673 77063039 -99911101 + L1M4 LINE L1 2711 3120 -3026 1083 279 49 14 chrX 77063039 77063466 -99910674 + LTR47B LTR ERVL 1 442 -1 817 275 83 33 chrX 77063466 77063699 -99910441 + L1M4 LINE L1 3120 3340 -2806 500 241 76 19 chrX 77063774 77063932 -99910208 + MER58A DNA MER1_type 42 208 -16 663 227 69 66 chrX 77063949 77064125 -99910015 + L1M4 LINE L1 3385 3564 -2582 1935 162 0 0 chrX 77064125 77064422 -99909718 + AluSc SINE Alu 2 298 -11 663 227 69 66 chrX 77064422 77064562 -99909578 + L1M4 LINE L1 3564 3702 -2444 370 291 102 16 chrX 77065227 77065354 -99908786 + L2 LINE L2 3162 3299 -14 21 0 0 0 chrX 77067541 77067562 -99906578 + AT_rich Low_complexity Low_complexity 1 21 0 301 147 80 27 chrX 77067675 77067750 -99906390 + L1M3 LINE L1 5685 5763 -420 2181 124 58 22 chrX 77067752 77068116 -99906024 + MER51B LTR ERV1 1 377 0 1133 81 5 48 chrX 77068116 77068302 -99905838 + MER51B-int LTR ERV1 1 178 -7638 2808 83 21 3 chrX 77068302 77068817 -99905323 - LTR10C LTR ERV1 0 591 1 3621 288 46 42 chrX 77069067 77070764 -99903376 - Harlequin LTR ERV1 -585 6064 4362 3339 113 24 13 chrX 77070940 77071561 -99902579 - Harlequin LTR ERV1 -4350 2546 1919 320 317 4 8 chrX 77071571 77071713 -99902427 + CT-rich Low_complexity Low_complexity 1 239 0 2889 178 45 13 chrX 77072737 77073337 -99900803 + MER51B-int LTR ERV1 176 794 -7022 1070 157 5 0 chrX 77073342 77073527 -99900613 + MER51B-int LTR ERV1 1038 1223 -6593 1035 152 25 0 chrX 77073530 77073728 -99900412 + MER51B-int LTR ERV1 936 1138 -6982 607 166 50 68 chrX 77073785 77073984 -99900156 + MER4A LTR ERV1 281 534 -130 7002 126 77 15 chrX 77073985 77074674 -99899466 + MER51B-int LTR ERV1 1807 2452 -5364 1913 183 93 30 chrX 77074674 77075134 -99899006 - LTR2B LTR ERV1 -1 489 1 7002 126 77 15 chrX 77075134 77075860 -99898280 + MER51B-int LTR ERV1 2452 3310 -4506 1640 150 73 34 chrX 77075863 77076300 -99897840 + MER51B-int LTR ERV1 1487 3172 -2774 1704 131 20 9 chrX 77076312 77076709 -99897431 + MER51B-int LTR ERV1 2217 2662 -2555 * 6935 150 64 34 chrX 77076686 77076836 -99897304 + MER51B-int LTR ERV1 5407 5551 -2265 1591 144 89 0 chrX 77076836 77077106 -99897034 + AluSg1 SINE Alu 1 294 -15 6935 150 64 34 chrX 77077106 77078022 -99896118 + MER51B-int LTR ERV1 5551 6438 -1378 2282 89 0 23 chrX 77078022 77078325 -99895815 + AluY SINE Alu 5 300 -11 6935 150 64 34 chrX 77078325 77079388 -99894752 + MER51B-int LTR ERV1 6438 7814 -2 2048 110 119 3 chrX 77079392 77079728 -99894412 + MER51B LTR ERV1 1 375 -2 911 199 127 4 chrX 77079734 77080001 -99894139 + L1MB2 LINE L1 5766 6065 -106 * 37091 68 2 2 chrX 77079997 77085905 -99888235 + L1PA5 LINE L1 254 6165 0 21 0 0 0 chrX 77086989 77087010 -99887130 + AT_rich Low_complexity Low_complexity 1 21 0 1072 263 68 16 chrX 77087212 77087972 -99886168 + L1MB5 LINE L1 4817 5648 -686 1932 147 0 7 chrX 77088038 77088360 -99885780 - AluSg SINE Alu 0 310 1 405 213 103 13 chrX 77088362 77088517 -99885623 + L1MB5 LINE L1 5662 5830 -344 765 182 98 0 chrX 77088517 77088660 -99885480 + FRAM SINE Alu 5 161 -5 1414 181 0 40 chrX 77088664 77088968 -99885172 + AluSg SINE Alu 5 296 -14 4668 190 35 8 chrX 77088970 77089951 -99884189 + L1MC1 LINE L1 5326 6332 -1 1000 224 39 39 chrX 77089967 77090302 -99883838 + L1MB5 LINE L1 5840 6174 0 1387 221 62 25 chrX 77090491 77090974 -99883166 - L1MB4 LINE L1 -1 6179 5679 581 231 49 0 chrX 77090988 77091131 -99883009 - Tigger2 DNA MER2_type -3 2715 2566 1498 183 61 4 chrX 77091133 77091395 -99882745 - AluSx SINE Alu -15 297 21 1843 121 4 8 chrX 77091480 77091744 -99882396 + AluSg SINE Alu 35 297 -13 1819 181 17 3 chrX 77092128 77092426 -99881714 + AluSx SINE Alu 9 310 -2 1367 204 8 8 chrX 77092426 77092671 -99881469 + AluJb SINE Alu 38 282 -30 588 98 43 11 chrX 77093604 77093696 -99880444 + THE1B LTR MaLR 257 351 -13 890 302 13 10 chrX 77093776 77094087 -99880053 + MLT1J2 LTR MaLR 15 326 -124 10530 144 23 30 chrX 77095805 77098654 -99875486 + L1P3 LINE L1 10 2906 -3555 2789 288 54 94 chrX 77098773 77098931 -99875209 - L1M2 LINE L1 -5119 1730 1567 243 0 0 0 chrX 77098931 77098958 -99875182 + (CA)n Simple_repeat Simple_repeat 2 28 0 2789 288 54 94 chrX 77098958 77100601 -99873539 - L1M2 LINE L1 -5282 1567 1 272 26 0 26 chrX 77101080 77101118 -99873022 + (TAAAA)n Simple_repeat Simple_repeat 3 39 0 375 277 40 0 chrX 77101620 77101721 -99872419 - MIR SINE MIR -70 192 88 449 238 0 0 chrX 77104532 77104637 -99869503 - L1MA5 LINE L1 -404 5896 5792 425 155 0 0 chrX 77104637 77104718 -99869422 + L1MA7 LINE L1 6189 6272 -19 28 29 0 0 chrX 77104726 77104761 -99869379 + AT_rich Low_complexity Low_complexity 1 35 0 304 282 32 34 chrX 77104761 77104879 -99869261 - MER5A DNA MER1_type -50 128 21 2154 101 0 3 chrX 77104925 77105247 -99868893 - AluSc SINE Alu 0 309 1 242 131 16 66 chrX 77105416 77105477 -99868663 + CT-rich Low_complexity Low_complexity 1 58 0 551 167 0 12 chrX 77105572 77105738 -99868402 + CT-rich Low_complexity Low_complexity 1 163 0 763 265 25 0 chrX 77105746 77105950 -99868190 - MER58A DNA MER1_type -12 212 4 287 304 78 17 chrX 77106050 77106165 -99867975 + FLAM_A SINE Alu 2 123 -10 2124 117 4 0 chrX 77106746 77107052 -99867088 + AluSq SINE Alu 1 307 0 349 325 42 0 chrX 77107888 77108008 -99866132 - L2 LINE L2 -3 3310 3186 323 387 43 18 chrX 77108074 77108402 -99865738 - L2 LINE L2 -1172 2142 1807 1555 234 47 20 chrX 77108831 77109276 -99864864 + MSTB2 LTR MaLR 1 457 0 277 205 55 16 chrX 77109742 77109869 -99864271 + (TA)n Simple_repeat Simple_repeat 1 132 0 22 35 0 0 chrX 77110796 77110825 -99863315 + AT_rich Low_complexity Low_complexity 1 29 0 30 27 0 0 chrX 77110861 77110898 -99863242 + AT_rich Low_complexity Low_complexity 1 37 0 2549 111 22 3 chrX 77111317 77111685 -99862455 + THE1C LTR MaLR 1 375 0 3057 162 62 29 chrX 77112397 77113025 -99861115 - MER39B LTR ERV1 -4 649 1 373 267 163 12 chrX 77113180 77113352 -99860788 + MIR SINE MIR 58 255 -7 863 171 46 5 chrX 77113511 77113728 -99860412 - L1MA7 LINE L1 -11 6280 6055 239 262 0 0 chrX 77113854 77113915 -99860225 + MIR SINE MIR 199 259 -3 1517 143 57 0 chrX 77113979 77114244 -99859896 + MER7A DNA MER2_type 1 278 -68 499 174 54 0 chrX 77114336 77114428 -99859712 + MER7A DNA MER2_type 240 336 -1 25348 133 20 22 chrX 77114972 77121345 -99852795 - L1PA7 LINE L1 -1 6468 119 300 151 110 0 chrX 77121451 77121524 -99852616 - L1M4 LINE L1 -825 5321 5241 267 324 43 22 chrX 77122408 77122547 -99851593 - MIR3 SINE MIR -14 194 53 31 26 0 0 chrX 77123171 77123209 -99850931 + AT_rich Low_complexity Low_complexity 1 38 0 351 282 6 61 chrX 77124415 77124578 -99849562 - MER20 DNA MER1_type -64 155 2 190 268 0 54 chrX 77125218 77125274 -99848866 - MIR SINE MIR -140 122 70 1307 92 10 10 chrX 77126401 77126607 -99847533 - L1PA8A LINE L1 -223 5908 5703 20952 56 50 3 chrX 77126614 77129520 -99844620 + L1P LINE L1 8 3050 -3096 12357 155 20 19 chrX 77129644 77131951 -99842189 - L1P LINE L1 -3826 2320 11 21 36 0 0 chrX 77132338 77132366 -99841774 + AT_rich Low_complexity Low_complexity 1 28 0 642 236 10 51 chrX 77133382 77133577 -99840563 + MER5A DNA MER1_type 1 187 -2 753 224 49 2 chrX 77133849 77134043 -99840097 - MER20 DNA MER1_type 0 219 1 1259 254 17 17 chrX 77134382 77134741 -99839399 + MLT1A1 LTR MaLR 1 359 -6 292 245 167 52 chrX 77134788 77134980 -99839160 + MER41C LTR ERV1 1 214 -340 184 309 36 0 chrX 77136568 77136623 -99837517 + L2 LINE L2 3194 3250 -22 238 270 87 8 chrX 77136762 77136888 -99837252 + L1ME4a LINE L1 5967 6102 -19 30 0 0 0 chrX 77137147 77137177 -99836963 + AT_rich Low_complexity Low_complexity 1 30 0 610 276 109 0 chrX 77137206 77137398 -99836742 + MER20 DNA MER1_type 1 213 -6 9743 177 26 8 chrX 77137922 77139804 -99834336 + L1P LINE L1 1322 3248 -2898 8482 47 2 0 chrX 77139804 77140768 -99833372 - LTR5 LTR ERVK -3 966 1 9743 177 26 8 chrX 77140768 77141063 -99833077 + L1P LINE L1 3248 3536 -2610 207 0 0 0 chrX 77141075 77141098 -99833042 + (CTATT)n Simple_repeat Simple_repeat 4 26 0 1726 126 11 0 chrX 77141098 77141376 -99832764 + L1PB1 LINE L1 5866 6146 -5 1206 218 11 79 chrX 77141965 77142332 -99831808 - MLT1E2 LTR MaLR 0 626 285 657 100 0 0 chrX 77142751 77142851 -99831289 + L1MA1 LINE L1 6203 6302 0 384 22 0 0 chrX 77143164 77143209 -99830931 + (CA)n Simple_repeat Simple_repeat 1 45 0 211 203 89 51 chrX 77143209 77143279 -99830861 + MIR3 SINE MIR 99 174 -34 774 271 75 18 chrX 77143599 77143879 -99830261 + L2 LINE L2 2996 3291 -22 28 48 0 0 chrX 77145468 77145510 -99828630 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 77145689 77145717 -99828423 + AT_rich Low_complexity Low_complexity 1 28 0 2351 84 0 0 chrX 77146429 77146715 -99827425 - AluY SINE Alu -17 294 9 304 145 16 0 chrX 77147059 77147121 -99827019 + MER96B DNA MER1_type? 307 369 -48 2689 92 102 0 chrX 77147188 77147591 -99826549 - MLT2A1 LTR ERVL 0 444 1 3804 75 60 0 chrX 77147591 77148139 -99826001 - HERVL-A1 LTR ERVL 0 5654 5074 1404 150 0 61 chrX 77148139 77148298 -99825842 - AluSx SINE Alu -20 292 152 2108 138 0 3 chrX 77148298 77148596 -99825544 - AluSq SINE Alu -16 297 1 1404 150 0 61 chrX 77148596 77148682 -99825458 - AluSx SINE Alu -160 152 62 16645 94 5 2 chrX 77148682 77151010 -99823130 - HERVL LTR ERVL -566 5088 2754 768 129 26 13 chrX 77151010 77151165 -99822975 + CT-rich Low_complexity Low_complexity 3 159 0 2311 104 0 0 chrX 77151167 77151474 -99822666 - AluY SINE Alu -4 307 1 1646 177 48 28 chrX 77151493 77151849 -99822291 + THE1B LTR MaLR 2 364 0 504 209 11 28 chrX 77151869 77152051 -99822089 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 442 232 32 32 chrX 77152071 77152196 -99821944 - FRAM SINE Alu -46 130 6 254 268 31 10 chrX 77152201 77152298 -99821842 - L1M4 LINE L1 -874 5272 5174 1394 140 25 21 chrX 77152332 77152568 -99821572 - AluSg/x SINE Alu -10 302 66 613 200 72 90 chrX 77152601 77152654 -99821486 - L1M4 LINE L1 -1014 5132 5080 1533 161 26 71 chrX 77152654 77152964 -99821176 + AluSq SINE Alu 1 296 -17 613 200 72 90 chrX 77152964 77153200 -99820940 - L1M4 LINE L1 -1066 5080 4848 715 221 221 5 chrX 77153204 77153412 -99820728 + AluJb SINE Alu 5 257 -55 1835 145 39 0 chrX 77153432 77153714 -99820426 - AluSx SINE Alu -19 293 1 2026 148 0 0 chrX 77153752 77154056 -99820084 + AluSx SINE Alu 7 310 -2 4795 171 24 12 chrX 77154174 77155541 -99818599 + L1PB1 LINE L1 4770 6146 -5 521 161 21 0 chrX 77155564 77155657 -99818483 + MER66A LTR ERV1 384 478 0 1359 188 22 16 chrX 77155657 77155971 -99818169 + L1MA8 LINE L1 5954 6269 -22 213 167 24 0 chrX 77156053 77156095 -99818045 + (TA)n Simple_repeat Simple_repeat 1 43 0 4947 102 48 7 chrX 77156409 77157217 -99816923 - L1PA7 LINE L1 -1 6153 5313 210 129 48 0 chrX 77157221 77157283 -99816857 + (TA)n Simple_repeat Simple_repeat 2 66 0 21699 80 5 6 chrX 77157286 77161092 -99813048 - L1PA6 LINE L1 -17 6137 2310 1344 54 73 5 chrX 77161200 77161405 -99812735 - L1PA7 LINE L1 -184 5970 5752 470 158 181 8 chrX 77161418 77161551 -99812589 - MER53 DNA DNA -33 156 1 10336 106 9 8 chrX 77161856 77164193 -99809947 - L1PA7 LINE L1 -1 6153 3809 9553 86 203 6 chrX 77164193 77166552 -99807588 + L1P2 LINE L1 2916 5778 -377 273 282 28 0 chrX 77168832 77168903 -99805237 + CT-rich Low_complexity Low_complexity 6 78 0 227 328 42 25 chrX 77169317 77169436 -99804704 + MIR SINE MIR 86 206 -56 421 341 52 6 chrX 77169858 77170031 -99804109 + MIR SINE MIR 72 252 -10 184 333 0 19 chrX 77171445 77171499 -99802641 + MIR3 SINE MIR 143 195 -13 221 335 40 40 chrX 77171743 77171895 -99802245 + MIR3 SINE MIR 30 181 -27 1947 151 0 38 chrX 77172008 77172327 -99801813 + AluSq SINE Alu 1 307 -6 198 103 0 0 chrX 77172442 77172471 -99801669 + (A)n Simple_repeat Simple_repeat 1 29 0 313 281 116 30 chrX 77172630 77172794 -99801346 + MIR SINE MIR 85 262 0 4856 163 25 24 chrX 77174420 77175354 -99798786 + L1PA8A LINE L1 205 1139 -4736 19406 147 15 96 chrX 77175358 77177568 -99796572 + L1PA8A LINE L1 1187 3574 -2872 2086 127 105 8 chrX 77177568 77177969 -99796171 + LTR7 LTR ERV1 1 440 -10 19406 147 15 96 chrX 77177969 77180645 -99793495 + L1PA8A LINE L1 3574 6030 -416 2030 37 4 0 chrX 77180650 77180896 -99793244 - L1PA2 LINE L1 0 6155 5909 1148 203 0 5 chrX 77181572 77181769 -99792371 - AluJo SINE Alu -114 198 3 4397 65 7 0 chrX 77182122 77182738 -99791402 + L1P LINE L1 4203 4822 -1324 2046 115 37 21 chrX 77182738 77183084 -99791056 - LTR6A LTR ERV1 -248 316 1 15808 181 15 4 chrX 77183084 77186742 -99787398 - HERVS71 LTR ERV1 -69 8909 5198 3629 87 29 16 chrX 77186742 77187226 -99786914 - LTR2B LTR ERV1 0 490 1 15808 181 15 4 chrX 77187226 77187252 -99786888 - HERVS71 LTR ERV1 -3780 5198 5174 1709 146 4 0 chrX 77187249 77187495 -99786645 - HERVS71 LTR ERV1 -6040 2938 2692 * 198 0 0 0 chrX 77188235 77188257 -99785883 + (A)n Simple_repeat Simple_repeat 1 22 0 1549 175 11 11 chrX 77188257 77188560 -99785580 + AluSq SINE Alu 21 323 0 590 248 23 61 chrX 77188642 77188856 -99785284 + MER20 DNA MER1_type 1 206 -13 1830 185 36 15 chrX 77188884 77189214 -99784926 + MER1B DNA MER1_type 1 337 0 1229 169 24 59 chrX 77190217 77190507 -99783633 - AluJo SINE Alu -21 291 12 2050 112 0 48 chrX 77190670 77190982 -99783158 - AluSg SINE Alu -13 297 1 267 257 82 105 chrX 77191026 77191197 -99782943 - L1ME1 LINE L1 -17 6149 5983 2503 218 24 12 chrX 77191245 77191744 -99782396 + LTR10B LTR ERV1 1 505 0 2692 118 56 12 chrX 77192825 77193239 -99780901 - LTR3 LTR ERVK 0 432 1 298 140 80 0 chrX 77193645 77193695 -99780445 - AluSc SINE Alu -10 289 236 3325 126 116 8 chrX 77193695 77194269 -99779871 - LTR12 LTR ERV1 0 1794 118 1416 212 0 19 chrX 77194968 77195284 -99778856 + AluJo SINE Alu 3 312 0 2092 133 0 7 chrX 77195468 77195769 -99778371 + AluSq SINE Alu 1 299 -14 300 271 0 12 chrX 77195949 77196034 -99778106 + L1M4 LINE L1 83 166 -6376 696 190 0 36 chrX 77196728 77196865 -99777275 + FLAM_C SINE Alu 11 142 -1 764 285 63 0 chrX 77196926 77197133 -99777007 + MER58A DNA MER1_type 1 220 -4 347 291 101 7 chrX 77197221 77197369 -99776771 - L1M4 LINE L1 -6376 166 5 926 253 8 8 chrX 77197379 77197640 -99776500 - AluJo SINE Alu -8 304 44 339 281 61 0 chrX 77197643 77197725 -99776415 - AluJo SINE Alu -127 175 89 946 230 19 5 chrX 77197726 77197935 -99776205 - AluJo SINE Alu -90 222 11 40 37 0 0 chrX 77198075 77198129 -99776011 + AT_rich Low_complexity Low_complexity 1 54 0 269 199 30 23 chrX 77198337 77198468 -99775672 + (TATAA)n Simple_repeat Simple_repeat 3 134 0 311 219 45 26 chrX 77198535 77198690 -99775450 + (TTATA)n Simple_repeat Simple_repeat 2 159 0 799 261 4 4 chrX 77198809 77199039 -99775101 + L1PA15 LINE L1 2257 2486 -3660 * 4283 209 15 25 chrX 77199032 77199409 -99774731 + L1PA15 LINE L1 5228 5607 -558 2221 89 14 0 chrX 77199409 77199689 -99774451 + AluY SINE Alu 1 284 -27 4283 209 15 25 chrX 77199689 77200259 -99773881 + L1PA15 LINE L1 5607 6165 0 1331 279 105 43 chrX 77200250 77200601 -99773539 + L1M4 LINE L1 1082 1410 -5236 * 1210 272 3 3 chrX 77200601 77200902 -99773238 + AluJo SINE Alu 1 301 -11 1331 279 105 43 chrX 77200902 77201547 -99772593 + L1M4 LINE L1 1410 2140 -4506 4765 130 55 12 chrX 77201729 77202534 -99771606 - L1PA8 LINE L1 -1 6171 5333 1935 81 0 0 chrX 77202534 77202792 -99771348 + HUERS-P1 LTR ERV1 3649 3906 -2357 976 125 15 0 chrX 77202792 77202928 -99771212 + AluSq/x SINE Alu 1 138 -174 2279 175 71 24 chrX 77203030 77203938 -99770202 - L1PBa LINE L1 -5147 1716 621 903 176 28 34 chrX 77203938 77204114 -99770026 - HUERS-P3b LTR ERV1 -1382 6036 5862 224 307 117 24 chrX 77204427 77204632 -99769508 + L2 LINE L2 1758 1981 -1333 516 342 22 19 chrX 77204677 77204946 -99769194 + HERVI LTR ERV1 7378 7647 -138 212 140 0 40 chrX 77206754 77206804 -99767336 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 19143 33 2 1 chrX 77206934 77209759 -99764381 + L1PA3 LINE L1 3098 5926 -229 1237 195 53 28 chrX 77209861 77210021 -99764119 - AluJo SINE Alu -23 289 118 2170 142 0 0 chrX 77210021 77210331 -99763809 - AluSx SINE Alu -2 310 1 1237 195 53 28 chrX 77210331 77210452 -99763688 - AluJo SINE Alu -194 118 1 1667 222 109 36 chrX 77210500 77210969 -99763171 - MLT2B1 LTR ERVL -15 505 3 619 198 9 0 chrX 77210971 77211087 -99763053 + MLT1D LTR MaLR 389 505 0 309 158 13 13 chrX 77211424 77211500 -99762640 - MER96B DNA MER1_type? -246 171 96 2055 104 7 27 chrX 77211690 77211987 -99762153 + AluSp SINE Alu 1 291 -22 225 0 0 0 chrX 77212126 77212151 -99761989 + (A)n Simple_repeat Simple_repeat 1 25 0 245 265 118 0 chrX 77212277 77212379 -99761761 - L2 LINE L2 -5 3308 3195 214 339 110 9 chrX 77212857 77212966 -99761174 + MIR3 SINE MIR 66 185 -23 183 186 0 0 chrX 77213085 77213128 -99761012 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 388 216 191 56 chrX 77213197 77213359 -99760781 - MER3 DNA MER1_type -17 192 9 1209 236 109 11 chrX 77213409 77213684 -99760456 + AluJo SINE Alu 1 302 0 1753 165 0 14 chrX 77213703 77214008 -99760132 + AluSx SINE Alu 3 303 0 235 312 12 4 chrX 77214250 77214337 -99759803 + MIR SINE MIR 60 144 -64 480 165 66 0 chrX 77215180 77215271 -99758869 + L1PA7 LINE L1 6058 6154 0 3843 252 62 71 chrX 77215275 77216542 -99757598 + L1P3 LINE L1 24 1277 -5184 189 0 0 0 chrX 77216542 77216563 -99757577 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3843 252 62 71 chrX 77216563 77216803 -99757337 + L1P3 LINE L1 1277 1518 -4943 3936 238 39 39 chrX 77216905 77218510 -99755630 - L1 LINE L1 -2807 3339 1703 269 261 45 3 chrX 77218629 77218753 -99755387 + MLT1E LTR MaLR 277 410 -216 791 245 0 0 chrX 77218766 77218921 -99755219 - AluJb SINE Alu -18 294 140 1678 128 25 41 chrX 77218921 77218971 -99755169 - HUERS-P1 LTR ERV1 -2063 4200 4151 2078 140 0 0 chrX 77218971 77219264 -99754876 - AluSg SINE Alu -17 293 1 1678 128 25 41 chrX 77219264 77219533 -99754607 - HUERS-P1 LTR ERV1 -2112 4151 3886 1840 174 3 0 chrX 77219537 77219836 -99754304 - AluSg SINE Alu -5 305 6 21 36 0 0 chrX 77219841 77219869 -99754271 + AT_rich Low_complexity Low_complexity 1 28 0 826 234 63 50 chrX 77219973 77220195 -99753945 - AluJo SINE Alu -85 227 3 2507 77 3 3 chrX 77220384 77220695 -99753445 + AluY SINE Alu 1 311 0 8587 111 24 15 chrX 77221085 77222465 -99751675 + L1PA7 LINE L1 2674 4065 -2081 243 0 0 0 chrX 77224487 77224514 -99749626 + (T)n Simple_repeat Simple_repeat 1 27 0 1332 126 5 0 chrX 77225543 77225734 -99748406 + AluSq SINE Alu 1 192 -121 8608 109 6 1 chrX 77225834 77227083 -99747057 + L1PA7 LINE L1 3983 5237 -909 1031 99 0 0 chrX 77227082 77227223 -99746917 + L1PA7 LINE L1 5959 6099 -55 * 1362 225 13 0 chrX 77227361 77227676 -99746464 + L1P3 LINE L1 2361 2679 -3782 2803 182 19 39 chrX 77227688 77228276 -99745864 + LTR22 LTR ERVK 5 580 0 567 163 22 0 chrX 77228293 77228385 -99745755 + AluSg/x SINE Alu 189 282 -30 6707 206 33 19 chrX 77428385 77429863 -99544277 + MER50-int LTR ERV1 3095 4593 -2612 1718 101 0 0 chrX 77429869 77430106 -99544034 - THE1A-int LTR MaLR -1138 442 206 1784 142 17 10 chrX 77430112 77430407 -99543733 - THE1A LTR MaLR -58 297 1 330 115 37 7 chrX 77430407 77430475 -99543665 + MER50-int LTR ERV1 4381 4447 -1499 * 6920 114 29 42 chrX 77430465 77431620 -99542520 + MER50-int LTR ERV1 5059 6198 -1007 1461 121 8 15 chrX 77431620 77431885 -99542255 + MER50-int LTR ERV1 6849 7197 -8 1657 157 29 0 chrX 77431885 77432165 -99541975 + MER50 LTR ERV1 1 288 -446 640 131 0 10 chrX 77432166 77432265 -99541875 + MER4A LTR ERV1 1 98 -566 1932 128 171 20 chrX 77432265 77432616 -99541524 + MER4A LTR ERV1 261 664 0 11413 118 118 45 chrX 77432619 77434953 -99539187 + MER4A-int LTR ERV1 1 2503 -4095 1197 194 5 0 chrX 77434959 77435175 -99538965 - LTR8 LTR ERV1 -474 217 1 1563 160 70 3 chrX 77435175 77435563 -99538577 + MER4A-int LTR ERV1 2737 3150 -3448 1418 174 45 34 chrX 77435591 77435970 -99538170 + MER4A-int LTR ERV1 3304 3686 -2912 192 40 0 0 chrX 77435980 77436005 -99538135 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 30508 110 8 25 chrX 77436005 77436669 -99537471 - L1PA7 LINE L1 -18 6451 5778 2387 83 0 3 chrX 77436669 77436970 -99537170 - AluSc SINE Alu -6 303 4 30508 110 8 25 chrX 77436970 77442760 -99531380 - L1PA7 LINE L1 -691 5778 1 10069 123 43 23 chrX 77442760 77444604 -99529536 + MER4A-int LTR ERV1 3844 5724 -874 1467 138 5 9 chrX 77444604 77444828 -99529312 + MER4A LTR ERV1 442 664 0 2023 205 24 7 chrX 77444828 77445243 -99528897 + MER50 LTR ERV1 290 711 -23 1652 171 0 4 chrX 77445244 77445519 -99528621 + L1PB3 LINE L1 5879 6152 -2 1573 209 0 20 chrX 77445861 77446162 -99527978 - AluJo SINE Alu -17 295 1 2004 134 0 10 chrX 77446278 77446568 -99527572 - AluSx SINE Alu -25 287 1 2240 96 0 39 chrX 77446621 77446933 -99527207 - AluY SINE Alu -11 300 1 22 35 0 0 chrX 77447081 77447110 -99527030 + AT_rich Low_complexity Low_complexity 1 29 0 260 350 36 29 chrX 77447861 77448001 -99526139 - L2 LINE L2 -31 3241 3101 16864 194 40 26 chrX 77448232 77455078 -99519062 + L1M1 LINE L1 17 6957 -743 1143 221 42 26 chrX 77455086 77455393 -99518747 + L1MD1 LINE L1 5772 6083 -159 255 103 0 0 chrX 77455404 77455443 -99518697 + (TG)n Simple_repeat Simple_repeat 2 40 0 451 252 125 22 chrX 77455489 77455858 -99518282 + L1MC/D LINE L1 2234 2640 -3506 280 314 21 0 chrX 77455864 77456004 -99518136 + (TA)n Simple_repeat Simple_repeat 2 144 0 221 252 0 8 chrX 77456030 77456161 -99517979 + (TA)n Simple_repeat Simple_repeat 2 131 0 6915 230 29 29 chrX 77456184 77458745 -99515395 + L1MA9 LINE L1 3393 5940 -372 259 100 0 0 chrX 77458847 77458887 -99515253 + L1PA7 LINE L1 6110 6149 -5 10393 175 18 65 chrX 77458972 77461050 -99513090 - L1PA15-16 LINE L1 -4863 1986 5 417 338 76 60 chrX 77461062 77461840 -99512300 - L1M4 LINE L1 -1753 4393 3604 2211 261 16 8 chrX 77461903 77462611 -99511529 + L1MC/D LINE L1 3032 3744 -2402 1321 219 50 14 chrX 77462995 77463273 -99510867 - AluJo SINE Alu -24 288 1 739 319 61 55 chrX 77463316 77464009 -99510131 + L1MC/D LINE L1 4020 4716 -1430 329 204 49 21 chrX 77464020 77464162 -99509978 + (TA)n Simple_repeat Simple_repeat 1 146 0 625 331 65 20 chrX 77464177 77464425 -99509715 + LTR33 LTR ERVL 26 284 -237 1768 324 62 15 chrX 77464794 77465572 -99508568 + ERVL LTR ERVL 3418 4231 -1533 287 321 38 46 chrX 77465717 77465957 -99508183 + L1MC/D LINE L1 5552 5789 -2019 21 0 0 0 chrX 77465966 77465987 -99508153 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 77466113 77466141 -99507999 + AT_rich Low_complexity Low_complexity 1 28 0 1815 207 56 25 chrX 77466604 77467048 -99507092 - LOR1b LTR ERV1 -3 458 1 322 256 33 11 chrX 77467125 77467215 -99506925 - MER5A DNA MER1_type -2 187 96 694 211 75 12 chrX 77467610 77467771 -99506369 - MER5B DNA MER1_type -6 172 2 255 355 57 28 chrX 77468833 77468974 -99505166 - L2 LINE L2 -1 3312 3168 * 1328 291 85 6 chrX 77468973 77469443 -99504697 - L2 LINE L2 -1028 2286 1780 1861 109 0 0 chrX 77469962 77470210 -99503930 + AluSc SINE Alu 39 286 -23 1592 199 35 11 chrX 77470529 77470876 -99503264 + MLT1A1 LTR MaLR 1 355 -10 2209 113 3 6 chrX 77470972 77471283 -99502857 + AluSg SINE Alu 1 310 0 228 283 0 0 chrX 77471283 77471336 -99502804 + MIR SINE MIR 23 75 -187 32 43 0 0 chrX 77471505 77471551 -99502589 + AT_rich Low_complexity Low_complexity 1 46 0 1036 156 28 104 chrX 77471883 77472133 -99502007 + LOR1b LTR ERV1 41 258 -203 2226 86 3 16 chrX 77472133 77472437 -99501703 - AluY SINE Alu 0 311 12 537 241 103 0 chrX 77472721 77472866 -99501274 + MLT1A1 LTR MaLR 465 624 0 21 57 0 0 chrX 77472908 77472943 -99501197 + AT_rich Low_complexity Low_complexity 1 35 0 192 77 0 0 chrX 77473167 77473193 -99500947 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 236 250 0 0 chrX 77474918 77474970 -99499170 + LTR30 LTR ERV1 1 52 -670 961 148 6 22 chrX 77474970 77475152 -99498988 + LTR12 LTR ERV1 53 231 -483 652 168 153 31 chrX 77475153 77475349 -99498791 + LTR12 LTR ERV1 55 274 -440 314 293 10 0 chrX 77475352 77475451 -99498689 + LTR30 LTR ERV1 544 643 -79 715 108 0 0 chrX 77475452 77475554 -99498586 + LTR12 LTR ERV1 481 582 -132 24 53 0 0 chrX 77475561 77475599 -99498541 + AT_rich Low_complexity Low_complexity 1 38 0 205 184 0 0 chrX 77475815 77475853 -99498287 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2090 115 0 26 chrX 77476217 77476521 -99497619 - AluSg SINE Alu -14 296 1 4773 208 44 12 chrX 77476525 77477594 -99496546 - L1MC3 LINE L1 -110 7675 6573 1202 256 36 31 chrX 77477594 77477607 -99496533 + MSTD LTR MaLR 33 44 -352 405 0 0 0 chrX 77477607 77477652 -99496488 + (TG)n Simple_repeat Simple_repeat 2 46 0 1202 256 36 31 chrX 77477652 77478005 -99496135 + MSTD LTR MaLR 44 396 0 2567 234 68 40 chrX 77478005 77478800 -99495340 - L1M4c LINE L1 -4517 2048 1193 198 0 0 0 chrX 77478800 77478822 -99495318 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2567 234 68 40 chrX 77478822 77478982 -99495158 - L1M4c LINE L1 -5372 1193 1039 262 149 21 0 chrX 77478983 77479030 -99495110 - L1M4c LINE L1 -5718 928 881 335 342 97 51 chrX 77479379 77479616 -99494524 - L1M4c LINE L1 -6293 249 2 331 224 67 101 chrX 77479663 77479842 -99494298 - L1M4 LINE L1 -3594 2552 2380 192 179 0 0 chrX 77479980 77480019 -99494121 + (TTA)n Simple_repeat Simple_repeat 1 39 0 22 56 0 0 chrX 77480056 77480092 -99494048 + AT_rich Low_complexity Low_complexity 1 36 0 235 269 0 0 chrX 77480654 77480706 -99493434 + LTR30 LTR ERV1 1 52 -670 660 218 8 77 chrX 77480706 77480940 -99493200 + LTR12 LTR ERV1 53 270 -444 378 224 42 0 chrX 77480940 77481046 -99493094 + LTR30 LTR ERV1 544 643 -79 671 119 0 0 chrX 77481047 77481148 -99492992 + LTR12 LTR ERV1 481 581 -133 25 75 0 0 chrX 77481267 77481320 -99492820 + AT_rich Low_complexity Low_complexity 1 53 0 315 248 134 13 chrX 77481743 77481892 -99492248 + MER58C DNA MER1_type 48 214 -1 408 273 187 16 chrX 77482505 77482692 -99491448 + MIR SINE MIR 39 257 -5 953 238 32 69 chrX 77482888 77483165 -99490975 + MLT2B1 LTR ERVL 1 267 -253 16474 190 32 20 chrX 77483169 77486374 -99487766 + ERVL-B1 LTR ERVL 2510 5753 -11 1442 238 85 25 chrX 77486381 77486824 -99487316 + MLT2B1 LTR ERVL 4 424 -40 504 0 0 0 chrX 77486871 77486927 -99487213 + (TA)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chrX 77487961 77487989 -99486151 + AT_rich Low_complexity Low_complexity 1 28 0 345 304 104 55 chrX 77488098 77488299 -99485841 + MIR SINE MIR 49 259 -3 1609 142 76 44 chrX 77488594 77488938 -99485202 + THE1C LTR MaLR 1 355 -20 2356 84 0 7 chrX 77488988 77489298 -99484842 - AluY SINE Alu -3 308 1 310 274 176 19 chrX 77489300 77489830 -99484310 + L1M4 LINE L1 4633 5245 -901 472 110 14 0 chrX 77489850 77489923 -99484217 + MADE1 DNA Mariner 6 79 -1 1049 302 132 21 chrX 77490069 77490498 -99483642 + L2 LINE L2 2621 3149 -164 1549 219 7 47 chrX 77490498 77490904 -99483236 - MLT1B LTR MaLR 0 390 1 1049 302 132 21 chrX 77490904 77491086 -99483054 + L2 LINE L2 3149 3309 -4 395 289 157 38 chrX 77491203 77491362 -99482778 - MER5A DNA MER1_type -1 188 11 2192 188 49 79 chrX 77492739 77493395 -99480745 - MER92B LTR ERV1 0 636 1 194 366 78 35 chrX 77493401 77493543 -99480597 - MIR3 SINE MIR -28 180 33 421 217 19 83 chrX 77493564 77493721 -99480419 - MER69 DNA AcHobo -9 2517 2371 4807 181 16 12 chrX 77493721 77494249 -99479891 + L1PA16 LINE L1 5199 5731 -435 5869 61 30 13 chrX 77494249 77495016 -99479124 + LTR17 LTR ERV1 1 780 0 4807 181 16 12 chrX 77495016 77495446 -99478694 + L1PA16 LINE L1 5731 6158 -8 1382 207 121 12 chrX 77495495 77495992 -99478148 - MER69 DNA AcHobo -268 2258 1708 449 200 30 20 chrX 77496002 77496102 -99478038 - MER69 DNA AcHobo -1625 901 801 774 297 36 5 chrX 77496108 77496330 -99477810 - MER69 DNA AcHobo -1994 532 304 204 111 0 0 chrX 77497154 77497190 -99476950 + (T)n Simple_repeat Simple_repeat 1 36 0 13461 170 21 28 chrX 77497294 77498131 -99476009 + L1PA13 LINE L1 2341 3183 -2980 1773 182 3 0 chrX 77498131 77498439 -99475701 + AluSx SINE Alu 1 309 -3 13461 170 21 28 chrX 77498439 77498459 -99475681 + L1PA13 LINE L1 3183 3202 -2961 1832 180 0 0 chrX 77498459 77498770 -99475370 + AluSx SINE Alu 1 311 -1 13461 170 21 28 chrX 77498770 77500045 -99474095 + L1PA13 LINE L1 3202 4485 -1678 2296 96 0 6 chrX 77500045 77500357 -99473783 + AluSx SINE Alu 1 310 -2 13461 170 21 28 chrX 77500357 77500451 -99473689 + L1PA13 LINE L1 4485 4578 -1585 2534 33 13 0 chrX 77500451 77500753 -99473387 + AluY SINE Alu 6 311 0 13461 170 21 28 chrX 77500753 77502221 -99471919 + L1PA13 LINE L1 4578 5959 -204 2072 128 0 0 chrX 77502221 77502510 -99471630 + AluSg SINE Alu 1 289 -21 13461 170 21 28 chrX 77502510 77502714 -99471426 + L1PA13 LINE L1 5959 6163 0 1590 261 76 32 chrX 77502870 77503438 -99470702 - MLT1E LTR MaLR 0 593 1 22 56 0 0 chrX 77503739 77503775 -99470365 + AT_rich Low_complexity Low_complexity 1 36 0 615 12 0 0 chrX 77505129 77505209 -99468931 - AluYa5/8 SINE Alu -1 310 231 30 27 0 0 chrX 77505237 77505274 -99468866 + AT_rich Low_complexity Low_complexity 1 37 0 1362 207 82 4 chrX 77505274 77505554 -99468586 - AluJb SINE Alu -10 302 1 2201 90 0 0 chrX 77505603 77505891 -99468249 + AluY SINE Alu 1 288 -23 21 57 0 0 chrX 77508198 77508233 -99465907 + AT_rich Low_complexity Low_complexity 1 35 0 378 315 129 18 chrX 77509001 77509341 -99464799 + L1ME4a LINE L1 5730 6107 -14 435 19 0 0 chrX 77509763 77509815 -99464325 + (TG)n Simple_repeat Simple_repeat 1 52 0 3464 215 96 17 chrX 77510823 77511543 -99462597 + L1MB7 LINE L1 5028 5846 -338 1788 198 40 0 chrX 77511543 77511892 -99462248 - MLT1A1 LTR MaLR -2 363 1 3464 215 96 17 chrX 77511892 77512252 -99461888 + L1MB7 LINE L1 5846 6176 -8 529 290 26 59 chrX 77513397 77513669 -99460471 - L2 LINE L2 0 3313 3051 2827 297 128 38 chrX 77513728 77515279 -99458861 - L2 LINE L2 -453 2861 1171 591 211 37 0 chrX 77515464 77515573 -99458567 + FLAM_A SINE Alu 3 115 -18 321 245 1 95 chrX 77515753 77515876 -99458264 - L1MC/D LINE L1 -540 5581 5476 459 215 117 78 chrX 77516212 77516417 -99457723 + L2 LINE L2 3101 3313 0 651 259 95 69 chrX 77516461 77517155 -99456985 - L1MC/D LINE L1 -1438 4708 3997 24 0 0 0 chrX 77517263 77517287 -99456853 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrX 77517516 77517545 -99456595 + AT_rich Low_complexity Low_complexity 1 29 0 1951 119 0 17 chrX 77517583 77517921 -99456219 - AluY SINE Alu 0 311 1 247 276 0 0 chrX 77518169 77518227 -99455913 + (CATA)n Simple_repeat Simple_repeat 3 60 0 192 40 0 0 chrX 77518228 77518253 -99455887 + (GA)n Simple_repeat Simple_repeat 2 26 0 1179 176 0 39 chrX 77518264 77518497 -99455643 - Tigger5 DNA MER2_type -15 2308 2085 216 278 0 14 chrX 77518577 77518612 -99455528 + (TA)n Simple_repeat Simple_repeat 2 36 -36 1249 209 62 38 chrX 77518612 77518951 -99455189 - MER7A DNA MER2_type -1 345 1 216 278 0 14 chrX 77518951 77518987 -99455153 + (TA)n Simple_repeat Simple_repeat 36 72 0 360 287 33 16 chrX 77518987 77519109 -99455031 - L1MC4 LINE L1 -1339 6703 6580 1334 202 48 94 chrX 77519211 77519645 -99454495 + MER66A LTR ERV1 97 478 0 10099 193 49 29 chrX 77519645 77521763 -99452377 + MER66A-int LTR ERV1 1 2160 -4516 13155 143 30 0 chrX 77521785 77524875 -99449265 + L1PA10 LINE L1 3044 6165 -3 7545 196 107 86 chrX 77524905 77527423 -99446717 + MER66A-int LTR ERV1 2348 4918 -1758 324 172 16 0 chrX 77527425 77527489 -99446651 + MER66A-int LTR ERV1 4877 4941 -1735 * 1512 179 51 0 chrX 77527478 77527751 -99446389 + MER66A-int LTR ERV1 6390 6676 0 614 213 164 7 chrX 77527819 77528026 -99446114 + MER66A LTR ERV1 97 221 -257 394 299 57 53 chrX 77528058 77528359 -99445781 - L1M4 LINE L1 -2161 3985 3684 572 383 82 21 chrX 77528457 77529286 -99444854 + L2 LINE L2 2180 3059 -213 180 329 13 13 chrX 77529739 77529815 -99444325 - MIR SINE MIR 0 262 187 4135 230 52 30 chrX 77530923 77531819 -99442321 - L1MB3 LINE L1 0 6183 5308 1073 248 39 19 chrX 77531819 77532182 -99441958 + MLT1A2 LTR MaLR 1 370 -4 4135 230 52 30 chrX 77532182 77533146 -99440994 - L1MB3 LINE L1 -875 5308 4366 234 0 0 0 chrX 77533146 77533172 -99440968 + (TG)n Simple_repeat Simple_repeat 2 27 0 4135 230 52 30 chrX 77533172 77533364 -99440776 - L1MB3 LINE L1 -1817 4366 4180 1718 225 10 20 chrX 77533364 77533764 -99440376 + MSTD LTR MaLR 1 396 0 4135 230 52 30 chrX 77533764 77533982 -99440158 - L1MB3 LINE L1 -2003 4180 3876 9882 174 18 25 chrX 77534008 77536976 -99437164 - L1PA13 LINE L1 -6 7595 4648 3616 210 15 17 chrX 77536964 77538101 -99436039 - L1PA13 LINE L1 -4024 3560 2405 * 8487 216 15 2 chrX 77538104 77539660 -99434480 - L1PA13 LINE L1 -5996 1585 9 1363 235 17 32 chrX 77539670 77539978 -99434162 - L1MB3 LINE L1 -2298 3848 3537 1812 149 79 82 chrX 77539978 77540168 -99433972 + MSTA LTR MaLR 1 190 -238 2129 101 50 3 chrX 77540168 77540465 -99433675 + AluY SINE Alu 1 311 0 1812 149 79 82 chrX 77540465 77540703 -99433437 + MSTA LTR MaLR 190 428 0 7950 163 34 42 chrX 77540705 77541215 -99432925 + MSTA-int LTR MaLR 3 516 -1064 213 39 0 0 chrX 77541215 77541241 -99432899 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 7950 163 34 42 chrX 77541241 77542321 -99431819 + MSTA-int LTR MaLR 516 1580 0 2014 152 91 15 chrX 77542323 77542719 -99431421 + MSTA LTR MaLR 3 428 0 1363 235 17 32 chrX 77542719 77542868 -99431272 - L1MB3 LINE L1 -2611 3535 3392 1877 171 3 0 chrX 77543238 77543547 -99430593 - AluSx SINE Alu -2 310 1 1458 277 123 11 chrX 77543979 77544542 -99429598 + MLT1E2 LTR MaLR 1 626 0 23 54 0 0 chrX 77544754 77544791 -99429349 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chrX 77544941 77544972 -99429168 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 77545440 77545462 -99428678 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 77545705 77545735 -99428405 + AT_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chrX 77546206 77546272 -99427868 + AT_rich Low_complexity Low_complexity 1 66 0 2411 75 0 3 chrX 77546425 77546733 -99427407 - AluY SINE Alu -4 307 1 2458 138 58 22 chrX 77547044 77547493 -99426647 + MER4C LTR ERV1 1 465 0 250 381 15 8 chrX 77547728 77547862 -99426278 + MIR SINE MIR 81 215 -47 22 70 0 0 chrX 77547925 77547968 -99426172 + AT_rich Low_complexity Low_complexity 1 43 0 3178 141 41 23 chrX 77548578 77549140 -99425000 - MER4B LTR ERV1 -36 574 3 26 0 0 0 chrX 77549235 77549261 -99424879 + AT_rich Low_complexity Low_complexity 1 26 0 1308 266 58 76 chrX 77549695 77550417 -99423723 - L1ME3A LINE L1 0 6170 5462 1544 292 69 51 chrX 77550421 77552141 -99421999 + L1ME LINE L1 2409 4159 -1987 912 286 73 21 chrX 77552283 77552923 -99421217 + L1ME LINE L1 4961 5643 -519 1337 288 65 17 chrX 77553088 77553568 -99420572 + LTR40a LTR ERVL 1 503 -16 1774 168 146 8 chrX 77553568 77553944 -99420196 + MSTA LTR MaLR 1 428 0 8314 161 8 56 chrX 77553947 77554667 -99419473 + MSTA-int LTR MaLR 3 756 -824 2668 29 0 3 chrX 77554667 77554979 -99419161 - AluY SINE Alu 0 311 1 8314 161 8 56 chrX 77554979 77555915 -99418225 + MSTA-int LTR MaLR 756 1580 0 1635 178 165 8 chrX 77555915 77556285 -99417855 + MSTA LTR MaLR 1 428 0 216 388 72 26 chrX 77556442 77556831 -99417309 + L2 LINE L2 2266 2672 -642 25 0 0 0 chrX 77557067 77557092 -99417048 + AT_rich Low_complexity Low_complexity 1 25 0 1567 223 76 49 chrX 77557467 77557730 -99416410 - MLT1D LTR MaLR 0 505 222 186 71 0 0 chrX 77557730 77557758 -99416382 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1567 223 76 49 chrX 77557758 77557983 -99416157 - MLT1D LTR MaLR -283 222 4 184 264 75 0 chrX 77558371 77558424 -99415716 - MIR SINE MIR -121 141 85 507 279 92 85 chrX 77558489 77558772 -99415368 - L2 LINE L2 0 3313 3029 281 296 162 51 chrX 77559360 77560002 -99414138 - HAL1 LINE L1 -3 2504 1792 689 212 51 72 chrX 77560029 77560270 -99413870 + MLT2A2 LTR ERVL 287 520 0 3307 146 48 2 chrX 77560270 77560811 -99413329 + MER4B LTR ERV1 45 610 0 7373 168 43 51 chrX 77560899 77562443 -99411697 + MER50-int LTR ERV1 180 1735 -5023 2137 124 0 3 chrX 77562443 77562749 -99411391 + AluSg SINE Alu 1 305 -5 7373 168 43 51 chrX 77562749 77563273 -99410867 + MER50-int LTR ERV1 1735 2262 -4496 2167 120 0 0 chrX 77563273 77563574 -99410566 + AluSg SINE Alu 1 301 -9 7373 168 43 51 chrX 77563574 77563654 -99410486 + MER50-int LTR ERV1 2262 2341 -4417 2207 112 0 0 chrX 77563654 77563948 -99410192 - AluY SINE Alu -17 294 1 7373 168 43 51 chrX 77563948 77564866 -99409274 + MER50-int LTR ERV1 2341 3327 -3431 626 137 0 0 chrX 77564873 77564968 -99409172 + MER50-int LTR ERV1 3452 3546 -3212 1660 142 11 36 chrX 77564979 77565458 -99408682 + MER50-int LTR ERV1 4041 7197 -8 3769 195 7 28 chrX 77565458 77566202 -99407938 + MER50 LTR ERV1 1 728 -6 6934 151 31 67 chrX 77566202 77567712 -99406428 + MER4B-int LTR ERV1 5122 6577 -181 1615 160 15 15 chrX 77567704 77567972 -99406168 + MER4B-int LTR ERV1 6491 6758 0 * 3432 154 41 0 chrX 77567972 77568558 -99405582 + MER4B LTR ERV1 1 610 0 696 293 106 24 chrX 77568695 77569241 -99404899 - HAL1 LINE L1 -1258 1249 659 21 0 0 0 chrX 77569297 77569318 -99404822 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 77570465 77570487 -99403653 + AT_rich Low_complexity Low_complexity 1 22 0 313 365 42 23 chrX 77571111 77571325 -99402815 + MIR SINE MIR 34 251 -11 508 285 55 80 chrX 77571621 77571933 -99402207 + L1ME LINE L1 2162 2465 -5090 861 292 95 23 chrX 77572130 77572740 -99401400 + L1ME LINE L1 2735 3388 -4358 1112 300 61 28 chrX 77572910 77573127 -99401013 + L1ME LINE L1 3550 3758 -3807 2045 128 3 0 chrX 77573127 77573417 -99400723 + AluY SINE Alu 1 291 -20 1112 300 61 28 chrX 77573417 77574036 -99400104 + L1ME LINE L1 3758 4414 -3151 897 212 42 19 chrX 77574104 77574436 -99399704 + L1ME LINE L1 2678 4861 -2704 1591 176 3 27 chrX 77574436 77574794 -99399346 - MER4A LTR ERV1 0 664 257 480 177 21 10 chrX 77574791 77574887 -99399253 - MER4A LTR ERV1 -567 97 1 * 1072 160 11 5 chrX 77574898 77575086 -99399054 - MER4A-int LTR ERV1 -5 6593 6405 2187 115 7 0 chrX 77576649 77576953 -99397187 + AluSq SINE Alu 6 311 -2 14942 117 51 10 chrX 77577236 77579725 -99394415 - MER4A-int LTR ERV1 -170 6428 3837 3008 125 79 21 chrX 77579728 77580433 -99393707 - MER4A-int LTR ERV1 -2921 3677 2840 542 183 122 0 chrX 77580433 77580548 -99393592 + LTR8 LTR ERV1 129 257 -434 4164 104 48 13 chrX 77580548 77581258 -99392882 - MER4A-int LTR ERV1 -4103 2495 1761 372 119 0 0 chrX 77581269 77581328 -99392812 + (CA)n Simple_repeat Simple_repeat 2 60 0 1412 81 34 64 chrX 77581328 77581668 -99392472 - MER4A-int LTR ERV1 -5609 1149 764 401 105 0 0 chrX 77581669 77581726 -99392414 - AluSc SINE Alu -64 235 179 * 1958 184 0 22 chrX 77581723 77582088 -99392052 + MER50 LTR ERV1 354 710 -24 12410 153 16 38 chrX 77582090 77584247 -99389893 + MER50-int LTR ERV1 1 2111 -5094 530 167 28 9 chrX 77634327 77634435 -99339705 + L1MD2 LINE L1 5187 5296 -850 * 15032 138 7 67 chrX 77634430 77634658 -99339482 - L1PA12 LINE L1 -3074 4510 4270 2202 88 7 0 chrX 77634658 77634941 -99339199 - AluY SINE Alu -26 285 1 15032 138 7 67 chrX 77634941 77637649 -99336491 - L1PA12 LINE L1 -3314 4270 483 15480 92 15 0 chrX 77637697 77640682 -99333458 + L1PA7 LINE L1 3148 6151 -3 2876 224 38 11 chrX 77640693 77641407 -99332733 + L1MD2 LINE L1 5304 6036 -323 748 242 7 0 chrX 77641410 77641563 -99332577 + AluJb SINE Alu 137 290 -22 1311 227 39 3 chrX 77641585 77641893 -99332247 + L1MD2 LINE L1 6028 6346 -13 510 193 40 88 chrX 77641896 77642013 -99332127 - L1MC5 LINE L1 -247 7714 7593 2374 85 0 3 chrX 77642013 77642319 -99331821 - AluY SINE Alu -6 305 1 510 193 40 88 chrX 77642319 77642341 -99331799 - L1MC5 LINE L1 -368 7593 7571 291 93 0 0 chrX 77642341 77642384 -99331756 + (CA)n Simple_repeat Simple_repeat 1 43 0 510 193 40 88 chrX 77642384 77642492 -99331648 - L1MC5 LINE L1 -390 7571 7478 1378 171 0 0 chrX 77642519 77642741 -99331399 + AluJo SINE Alu 84 305 -7 508 183 107 23 chrX 77642749 77642880 -99331260 - L1MC5 LINE L1 -515 7446 7305 897 153 11 6 chrX 77642966 77643143 -99330997 + CT-rich Low_complexity Low_complexity 3 180 0 1821 178 3 0 chrX 77643145 77643437 -99330703 - AluJo SINE Alu -12 300 8 26 74 0 0 chrX 77644062 77644116 -99330024 + AT_rich Low_complexity Low_complexity 1 54 0 180 382 0 11 chrX 77646473 77646562 -99327578 - L2 LINE L2 -6 3307 3220 880 327 198 35 chrX 77646777 77647264 -99326876 - L2 LINE L2 -245 3068 2662 2145 69 3 20 chrX 77647264 77647567 -99326573 - L1MA1 LINE L1 -1 6301 6004 880 327 198 35 chrX 77647567 77647779 -99326361 - L2 LINE L2 -651 2662 2486 360 0 0 0 chrX 77647779 77647819 -99326321 + (CA)n Simple_repeat Simple_repeat 1 40 0 880 327 198 35 chrX 77647819 77648251 -99325889 - L2 LINE L2 -827 2486 1755 21 100 0 0 chrX 77648662 77648732 -99325408 + AT_rich Low_complexity Low_complexity 1 70 0 21 82 0 0 chrX 77650357 77650406 -99323734 + AT_rich Low_complexity Low_complexity 1 49 0 5901 58 1 19 chrX 77651095 77651875 -99322265 - MER4E LTR ERV1 0 766 1 1174 195 0 9 chrX 77652423 77652654 -99321486 - L1PB4 LINE L1 0 6156 5928 3725 108 11 0 chrX 77652701 77653249 -99320891 - MER41A LTR ERV1 0 554 1 23 33 0 0 chrX 77653387 77653417 -99320723 + AT_rich Low_complexity Low_complexity 1 30 0 2399 148 10 2 chrX 77654121 77654521 -99319619 + MER57A LTR ERV1 1 403 0 5358 133 7 12 chrX 77654521 77655331 -99318809 + MER57A-int LTR ERV1 1 806 -6731 1725 137 4 11 chrX 77655324 77655586 -99318554 + MER57A-int LTR ERV1 361 620 -5326 * 6706 136 23 16 chrX 77655570 77656669 -99317471 + MER57A-int LTR ERV1 1079 2185 -3761 14505 102 26 18 chrX 77656671 77657011 -99317129 + MER57A-int LTR ERV1 3892 4228 -3309 1794 157 0 0 chrX 77657011 77657279 -99316861 + AluSx SINE Alu 8 275 -37 207 0 0 0 chrX 77657286 77657309 -99316831 + (CAA)n Simple_repeat Simple_repeat 2 24 0 14505 102 26 18 chrX 77657309 77659166 -99314974 + MER57A-int LTR ERV1 4233 6114 -1423 2288 96 27 32 chrX 77659179 77659365 -99314775 - L1PB1 LINE L1 0 6151 5966 2431 72 0 0 chrX 77659365 77659669 -99314471 - AluY SINE Alu -7 304 1 2288 96 27 32 chrX 77659669 77659857 -99314283 - L1PB1 LINE L1 -185 5966 5779 37 23 0 0 chrX 77659883 77659927 -99314213 + AT_rich Low_complexity Low_complexity 1 44 0 2853 90 10 0 chrX 77659927 77660317 -99313823 - L1PB1 LINE L1 -361 5790 5397 4802 85 12 0 chrX 77660328 77660978 -99313162 + MER57A-int LTR ERV1 6489 7146 -391 638 163 24 8 chrX 77660978 77661101 -99313039 + LTR54B LTR ERV1 3 127 -371 1385 153 7 64 chrX 77661101 77661383 -99312757 + MER57A-int LTR ERV1 7272 7537 0 608 159 18 9 chrX 77661383 77661496 -99312644 + MER57A LTR ERV1 1 114 -289 3153 222 54 20 chrX 77661496 77662344 -99311796 - L1MC3 LINE L1 -124 7661 6785 1082 198 90 19 chrX 77662369 77662637 -99311503 + MLT1C LTR MaLR 28 314 -153 1520 237 133 7 chrX 77662650 77663199 -99310941 - L1MC3 LINE L1 -2049 5993 5376 * 1701 222 32 21 chrX 77663192 77663869 -99310271 - L1M4 LINE L1 -618 5566 4880 457 321 56 34 chrX 77663882 77664206 -99309934 - L1MCb LINE L1 -5674 371 41 2284 77 0 32 chrX 77665097 77665410 -99308730 + AluY SINE Alu 1 303 -8 21 0 0 0 chrX 77665664 77665685 -99308455 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chrX 77665933 77665966 -99308174 + AT_rich Low_complexity Low_complexity 1 33 0 6631 188 27 3 chrX 77666753 77667421 -99306719 - L1PA14 LINE L1 -1 6160 5509 351 0 0 0 chrX 77667421 77667460 -99306680 + (TTA)n Simple_repeat Simple_repeat 1 39 0 6631 188 27 3 chrX 77667460 77668915 -99305225 - L1PA14 LINE L1 -652 5509 3983 1799 184 83 18 chrX 77668918 77669436 -99304704 - MLT2A2 LTR ERVL -8 546 1 9949 241 39 9 chrX 77669436 77670746 -99303394 - L1PA14 LINE L1 -2158 3988 2718 2010 164 13 24 chrX 77670746 77671123 -99303017 + THE1C LTR MaLR 1 373 -2 9949 241 39 9 chrX 77671123 77672460 -99301680 - L1PA14 LINE L1 -3428 2718 1264 6122 153 6 1 chrX 77672467 77673430 -99300710 + L1PA14 LINE L1 1719 2686 -4895 181 191 0 111 chrX 77673701 77673764 -99300376 + L2 LINE L2 2911 2966 -306 218 303 64 20 chrX 77674494 77674630 -99299510 + MIR SINE MIR 57 206 -2 21 0 0 0 chrX 77674918 77674939 -99299201 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 77675165 77675195 -99298945 + AT_rich Low_complexity Low_complexity 1 30 0 2074 134 0 3 chrX 77675600 77675894 -99298246 + AluSx SINE Alu 1 295 -17 297 51 0 0 chrX 77675894 77675933 -99298207 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2074 134 0 3 chrX 77675933 77675951 -99298189 + AluSx SINE Alu 295 312 0 2980 176 9 7 chrX 77675990 77676565 -99297575 - L1 LINE L1 -1018 5128 4553 236 164 0 55 chrX 77676583 77676638 -99297502 - Alu SINE Alu 0 302 251 10492 198 143 60 chrX 77676667 77677981 -99296159 - L1 LINE L1 -812 6753 5549 639 140 0 0 chrX 77677981 77678081 -99296059 + FLAM_C SINE Alu 32 131 -12 10492 198 143 60 chrX 77678081 77678868 -99295272 - L1 LINE L1 -2016 5549 4828 1009 127 22 6 chrX 77678868 77679049 -99295091 - L1MA1 LINE L1 0 6302 6119 10492 198 143 60 chrX 77679049 77679892 -99294248 - L1 LINE L1 -2737 4828 4056 210 37 0 0 chrX 77679892 77679919 -99294221 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 10492 198 143 60 chrX 77679919 77682754 -99291386 - L1 LINE L1 -3509 4056 13 832 241 10 0 chrX 77682779 77682974 -99291166 - L1 LINE L1 -1920 4226 4030 * 2154 203 85 102 chrX 77682963 77684270 -99289870 + L1MA9 LINE L1 5092 6312 0 1993 88 67 7 chrX 77684296 77684580 -99289560 + AluSx SINE Alu 1 301 -11 3156 209 53 48 chrX 77684580 77685412 -99288728 + L1MA10 LINE L1 5496 6331 -3 1323 158 36 0 chrX 77685838 77686060 -99288080 - MER30 DNA MER1_type 0 230 1 1542 80 0 68 chrX 77686622 77686802 -99287338 - L1MA1 LINE L1 0 6302 6144 2163 116 0 3 chrX 77686802 77687112 -99287028 + AluSx SINE Alu 1 309 -3 1542 80 0 68 chrX 77687112 77687195 -99286945 - L1MA1 LINE L1 -158 6144 6057 323 365 52 16 chrX 77687830 77688022 -99286118 + MIR SINE MIR 45 243 -19 363 330 46 0 chrX 77688549 77688658 -99285482 + L2 LINE L2 3158 3271 -1 351 0 0 0 chrX 77688800 77688839 -99285301 + (TG)n Simple_repeat Simple_repeat 2 40 0 1568 194 51 23 chrX 77689498 77689890 -99284250 - L1MB1 LINE L1 -5 6163 5761 710 251 62 10 chrX 77690065 77690260 -99283880 + MIR SINE MIR 1 205 -57 266 318 118 23 chrX 77690842 77691119 -99283021 + L1MC/D LINE L1 5468 5793 -2015 24 53 0 0 chrX 77692596 77692634 -99281506 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chrX 77692688 77692720 -99281420 + AT_rich Low_complexity Low_complexity 1 32 0 258 376 11 0 chrX 77694720 77694813 -99279327 + MIR3 SINE MIR 13 106 -102 2591 146 44 17 chrX 77695131 77695604 -99278536 + LTR19A LTR ERV1 1 486 0 2451 92 42 50 chrX 77695874 77696254 -99277886 - MER51B LTR ERV1 0 377 1 24 0 0 0 chrX 77696432 77696456 -99277684 + AT_rich Low_complexity Low_complexity 1 24 0 334 386 88 16 chrX 77696504 77696812 -99277328 - L3 LINE CR1 -13 1564 1235 350 347 138 15 chrX 77696901 77697097 -99277043 - L3 LINE CR1 -885 692 473 1844 166 88 111 chrX 77698085 77698699 -99275441 - MER4A LTR ERV1 0 600 1 285 347 54 7 chrX 77698701 77698848 -99275292 - MIR SINE MIR -79 183 30 2647 187 67 64 chrX 77699491 77699829 -99274311 - MER67B LTR ERV1 0 661 326 2553 68 0 0 chrX 77699829 77700140 -99274000 + AluY SINE Alu 1 311 0 2647 187 67 64 chrX 77700140 77700239 -99273901 - MER67B LTR ERV1 -335 326 229 2779 120 45 2 chrX 77700239 77700705 -99273435 + LTR19A LTR ERV1 1 486 0 2647 187 67 64 chrX 77700705 77700925 -99273215 - MER67B LTR ERV1 -432 229 1 1678 265 40 19 chrX 77701807 77702279 -99271861 - LTR40a LTR ERVL -1 518 37 1666 160 50 47 chrX 77702280 77702643 -99271497 - THE1B LTR MaLR 0 364 1 7413 147 106 51 chrX 77702643 77704138 -99270002 - THE1B-int LTR MaLR 0 1580 3 1586 136 59 95 chrX 77704140 77704529 -99269611 - THE1C LTR MaLR 0 375 1 42 0 0 0 chrX 77704812 77704854 -99269286 + AT_rich Low_complexity Low_complexity 1 42 0 187 259 12 111 chrX 77705030 77705111 -99269029 + L2 LINE L2 3237 3309 -4 35 63 0 0 chrX 77705257 77705320 -99268820 + AT_rich Low_complexity Low_complexity 1 63 0 444 301 81 56 chrX 77706384 77706793 -99267347 + L1ME LINE L1 236 654 -5416 5140 127 15 1 chrX 77706853 77707649 -99266491 + L1PA16 LINE L1 5360 6166 0 476 268 61 17 chrX 77707948 77708179 -99265961 + L1ME LINE L1 843 1083 -5000 2064 279 71 49 chrX 77708207 77708643 -99265497 + L1MEc LINE L1 253 678 -5718 2175 87 3 3 chrX 77708643 77708952 -99265188 - AluY SINE Alu -2 309 1 2064 279 71 49 chrX 77708952 77709709 -99264431 + L1MEc LINE L1 678 1473 -4923 324 374 0 8 chrX 77709829 77709952 -99264188 - MER5A DNA MER1_type -4 185 64 1511 225 61 30 chrX 77709995 77710400 -99263740 - L1ME2 LINE L1 -12 6152 5728 2220 109 0 0 chrX 77710400 77710702 -99263438 - AluSc SINE Alu -6 303 2 1511 225 61 30 chrX 77710702 77710771 -99263369 - L1ME2 LINE L1 -436 5728 5663 431 282 56 31 chrX 77710780 77711067 -99263073 - L1ME2 LINE L1 -893 5253 4960 369 322 40 35 chrX 77711144 77711514 -99262626 - L1MCc LINE L1 -6024 399 28 31 26 0 0 chrX 77711899 77711937 -99262203 + AT_rich Low_complexity Low_complexity 1 38 0 1890 155 117 8 chrX 77712199 77712585 -99261555 - MSTA LTR MaLR 0 428 1 1032 255 46 35 chrX 77712828 77713185 -99260955 - MSTD LTR MaLR 0 396 1 2107 132 3 0 chrX 77713652 77713955 -99260185 - AluSx SINE Alu -8 304 1 502 353 16 5 chrX 77714239 77714426 -99259714 + MIR SINE MIR 18 206 -56 297 0 0 0 chrX 77714522 77714555 -99259585 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 64 0 0 chrX 77714558 77714605 -99259535 + AT_rich Low_complexity Low_complexity 1 47 0 31 0 0 0 chrX 77714644 77714675 -99259465 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 77714830 77714860 -99259280 + AT_rich Low_complexity Low_complexity 1 30 0 229 260 0 0 chrX 77715110 77715160 -99258980 + L1MD3 LINE L1 6618 6667 -1328 2881 186 6 6 chrX 77715990 77716857 -99257283 - L1P4 LINE L1 -558 5603 4739 751 174 40 29 chrX 77716956 77717139 -99257001 - MIR SINE MIR -49 213 31 23 54 0 0 chrX 77719030 77719067 -99255073 + AT_rich Low_complexity Low_complexity 1 37 0 2173 74 47 10 chrX 77721336 77721635 -99252505 - AluSg SINE Alu 0 310 1 3430 210 23 0 chrX 77721637 77722381 -99251759 - L1P4 LINE L1 -1395 4751 3991 2943 149 20 0 chrX 77722431 77722922 -99251218 + L1PA13 LINE L1 5652 6152 -11 2237 104 3 0 chrX 77722947 77723244 -99250896 + AluSg SINE Alu 1 298 -12 6555 73 38 24 chrX 77723247 77724332 -99249808 - L1PA8 LINE L1 -16 6156 5060 2771 107 19 0 chrX 77724334 77724753 -99249387 + L1PA8 LINE L1 4631 5057 -1089 220 278 0 28 chrX 77725565 77725637 -99248503 + (CAGAGA)n Simple_repeat Simple_repeat 6 75 0 2376 221 13 2 chrX 77725637 77726090 -99248050 - MLT2B2 LTR ERVL -57 458 1 1083 262 49 18 chrX 77726092 77726478 -99247662 - L1ME1 LINE L1 -268 5898 5501 318 286 38 32 chrX 77726496 77726775 -99247365 - L1ME1 LINE L1 -733 5441 5159 2597 192 12 4 chrX 77726787 77727282 -99246858 + L1PA8 LINE L1 4 502 -5373 24867 155 25 17 chrX 77727288 77728703 -99245437 + L1PA8 LINE L1 771 2173 -4314 2227 60 0 0 chrX 77728703 77728968 -99245172 - AluY SINE Alu -11 300 36 24867 155 25 17 chrX 77728968 77733204 -99240936 + L1PA8 LINE L1 2173 6467 -20 888 239 96 49 chrX 77733199 77733646 -99240494 - L1ME1 LINE L1 -970 5176 4709 * 2602 263 60 28 chrX 77734093 77735250 -99238890 + L1M4c LINE L1 777 1899 -4485 1069 274 44 24 chrX 77735320 77736139 -99238001 + L1M4c LINE L1 2094 2927 -3455 5992 125 30 20 chrX 77736151 77737241 -99236899 - L1MA2 LINE L1 0 6304 5206 7391 148 29 46 chrX 77737253 77737356 -99236784 - THE1C-int LTR MaLR -310 1270 1167 2358 98 0 0 chrX 77737356 77737652 -99236488 - AluSg SINE Alu -14 296 1 7391 148 29 46 chrX 77737652 77738840 -99235300 - THE1C-int LTR MaLR -413 1167 1 2011 154 16 39 chrX 77738840 77739224 -99234916 - THE1C LTR MaLR 0 375 1 308 248 143 0 chrX 77739226 77739331 -99234809 + LTR49 LTR ERV1 476 595 0 579 258 58 54 chrX 77739396 77739656 -99234484 - L1MCc LINE L1 -5044 1379 1119 994 74 7 15 chrX 77739674 77739809 -99234331 + AluSp/q SINE Alu 168 301 -12 234 0 0 0 chrX 77739951 77739977 -99234163 + (T)n Simple_repeat Simple_repeat 1 26 0 2788 147 74 11 chrX 77740429 77741005 -99233135 - MER4B LTR ERV1 0 766 1 2579 121 5 19 chrX 77741007 77741386 -99232754 - MER4B-int LTR ERV1 -4 6754 6381 3115 154 37 0 chrX 77741424 77741942 -99232198 - MER4B-int LTR ERV1 -486 6272 5736 6829 131 61 18 chrX 77741942 77743108 -99231032 - MER4B-int LTR ERV1 -1222 5536 4321 4008 151 53 62 chrX 77743107 77743636 -99230504 - MER4B-int LTR ERV1 -2571 4187 3621 * 287 89 0 22 chrX 77743636 77743681 -99230459 - MADE1 DNA Mariner -34 46 3 4008 151 53 62 chrX 77743681 77743881 -99230259 - MER4B-int LTR ERV1 -3137 3621 3421 2959 133 32 26 chrX 77743867 77744452 -99229688 - MER4B-int LTR ERV1 -3663 3095 2507 * 1525 197 68 15 chrX 77744452 77744777 -99229363 + MER61A LTR ERV1 2 343 0 1106 182 122 28 chrX 77744777 77744966 -99229174 + MER61A-int LTR ERV1 2 221 -4996 2198 125 70 14 chrX 77744966 77745311 -99228829 + THE1B LTR MaLR 1 364 0 1106 182 122 28 chrX 77745311 77745368 -99228772 + MER61A-int LTR ERV1 221 271 -4946 2540 138 45 19 chrX 77745400 77745865 -99228275 + MER61A-int LTR ERV1 364 840 -4377 871 137 0 7 chrX 77745865 77746004 -99228136 + MER61A-int LTR ERV1 1880 2017 -3929 * 25546 106 31 20 chrX 77746000 77750014 -99224126 + MER61A-int LTR ERV1 1224 5217 0 1370 244 36 15 chrX 77750014 77750350 -99223790 + MER61A LTR ERV1 1 343 0 5048 123 69 51 chrX 77750350 77752260 -99221880 - MER4B-int LTR ERV1 -4109 2489 1410 2246 255 65 19 chrX 77752266 77752959 -99221181 + MER50 LTR ERV1 10 734 0 213 65 0 0 chrX 77753153 77753184 -99220956 + (CA)n Simple_repeat Simple_repeat 2 32 0 1192 126 28 28 chrX 77753185 77753399 -99220741 - MER4B-int LTR ERV1 -5621 1137 924 4685 161 65 11 chrX 77753427 77754226 -99219914 - MER4B-int LTR ERV1 -5916 842 1 3069 136 63 22 chrX 77754257 77754808 -99219332 - MER4B LTR ERV1 -36 574 1 245 264 22 11 chrX 77755055 77755146 -99218994 - LTR48 LTR ERV1 -82 705 614 * 1452 175 108 74 chrX 77755140 77755557 -99218583 - LTR49 LTR ERV1 -161 434 4 292 338 0 0 chrX 77758847 77758924 -99215216 - L2 LINE L2 -10 3262 3186 15890 225 23 14 chrX 77758928 77762634 -99211506 + L1PA15 LINE L1 81 3752 -3064 2871 92 52 34 chrX 77762634 77762677 -99211463 - MLT2A2 LTR ERVL 0 453 412 453 90 0 0 chrX 77762677 77762744 -99211396 + (TG)n Simple_repeat Simple_repeat 2 68 0 2871 92 52 34 chrX 77762744 77763145 -99210995 - MLT2A2 LTR ERVL -41 412 1 15890 225 23 14 chrX 77763145 77764104 -99210036 + L1PA15 LINE L1 3752 4701 -2115 2439 80 10 3 chrX 77764104 77764415 -99209725 + AluSq SINE Alu 1 313 0 15890 225 23 14 chrX 77764415 77766265 -99207875 + L1PA15 LINE L1 4701 6816 0 370 128 103 0 chrX 77766508 77766584 -99207556 + Tigger7 DNA MER2_type 2355 2438 -149 2036 238 77 25 chrX 77766584 77766901 -99207239 - LTR48B LTR ERV1 -2 642 343 4802 171 26 10 chrX 77766901 77767790 -99206350 + MER4D LTR ERV1 1 903 0 2036 238 77 25 chrX 77767790 77768082 -99206058 - LTR48B LTR ERV1 -301 343 1 553 246 21 0 chrX 77768082 77768223 -99205917 + Tigger7 DNA MER2_type 2333 2476 -11 2264 100 3 0 chrX 77768566 77768867 -99205273 - AluY SINE Alu -9 302 1 22 0 0 0 chrX 77769347 77769369 -99204771 + AT_rich Low_complexity Low_complexity 1 22 0 47 44 0 0 chrX 77769576 77769644 -99204496 + AT_rich Low_complexity Low_complexity 1 68 0 2174 179 98 33 chrX 77770235 77770784 -99203356 + MER34C LTR ERV1 1 585 0 209 105 0 26 chrX 77771191 77771229 -99202911 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 28 29 0 0 chrX 77771376 77771411 -99202729 + AT_rich Low_complexity Low_complexity 1 35 0 2160 167 64 12 chrX 77772209 77772616 -99201524 - MSTA LTR MaLR 0 428 1 1962 168 13 13 chrX 77773137 77773512 -99200628 - THE1C LTR MaLR 0 375 1 436 153 25 76 chrX 77773619 77773737 -99200403 - LTR48B-int LTR ERV1 -1 6330 6219 1508 199 12 45 chrX 77773907 77774244 -99199896 - MLT1D LTR MaLR 0 505 180 313 204 0 0 chrX 77774353 77774407 -99199733 - MLT1D LTR MaLR -323 182 129 375 278 49 45 chrX 77774409 77774697 -99199443 - MER34B LTR ERV1 0 565 277 7982 204 63 53 chrX 77774742 77776501 -99197639 - LTR48B-int LTR ERV1 -1 6330 4545 1442 218 3 33 chrX 77776501 77776808 -99197332 + AluJb SINE Alu 1 298 -14 7982 204 63 53 chrX 77776808 77777738 -99196402 - LTR48B-int LTR ERV1 -1786 4545 3625 1912 185 36 30 chrX 77777803 77778346 -99195794 + MLT2A2 LTR ERVL 1 543 -11 413 141 71 40 chrX 77778358 77778457 -99195683 - LTR48B-int LTR ERV1 -2775 3556 3455 2891 103 13 74 chrX 77778598 77778754 -99195386 - L1PA11 LINE L1 -1 6173 6009 2363 77 3 3 chrX 77778754 77779054 -99195086 - AluY SINE Alu -11 300 1 2891 103 13 74 chrX 77779054 77779422 -99194718 - L1PA11 LINE L1 -165 6009 5681 322 188 14 90 chrX 77779422 77779566 -99194574 - MER57A-int LTR ERV1 -3093 1843 1711 530 198 21 42 chrX 77779723 77779952 -99194188 - MER57A-int LTR ERV1 -3203 3128 1299 901 266 48 86 chrX 77779971 77780294 -99193846 - MER57A-int LTR ERV1 -4231 2100 1766 753 131 17 91 chrX 77780294 77780470 -99193670 - L1PB3 LINE L1 -9 6145 5983 901 266 48 86 chrX 77780470 77780569 -99193571 - MER57A-int LTR ERV1 -4565 1766 343 367 180 40 10 chrX 77780621 77780721 -99193419 - MER57A-int LTR ERV1 -3045 2078 1976 1657 199 65 47 chrX 77780763 77781320 -99192820 - MER57A-int LTR ERV1 -2078 4253 3687 472 235 58 75 chrX 77781311 77781399 -99192741 - MER57A-int LTR ERV1 -1950 3625 3537 * 4146 30 0 6 chrX 77781399 77781897 -99192243 - L1PA4 LINE L1 0 6155 5661 472 235 58 75 chrX 77781897 77782395 -99191745 - MER57A-int LTR ERV1 -2038 3537 1554 449 257 9 0 chrX 77782500 77782605 -99191535 - MER57A-int LTR ERV1 -2878 3453 3348 1033 203 14 0 chrX 77782652 77782859 -99191281 - MER57A-int LTR ERV1 -2981 3350 3141 412 203 39 112 chrX 77782888 77783141 -99190999 - MER57A-int LTR ERV1 -3730 1393 1252 2179 91 7 17 chrX 77783143 77783441 -99190699 - AluSx SINE Alu -17 295 1 867 213 0 0 chrX 77783459 77783609 -99190531 - FAM SINE Alu -26 159 10 543 280 95 0 chrX 77783897 77784065 -99190075 - MER34C LTR ERV1 -247 338 155 484 273 0 20 chrX 77784065 77784215 -99189925 - MER57A-int LTR ERV1 -4135 988 842 2280 244 88 47 chrX 77784326 77784925 -99189215 - MER57A-int LTR ERV1 -6713 824 183 2139 118 3 0 chrX 77784925 77785221 -99188919 + AluSx SINE Alu 1 297 -15 2280 244 88 47 chrX 77785221 77785412 -99188728 - MER57A-int LTR ERV1 -7354 183 1 1848 189 53 3 chrX 77785414 77785789 -99188351 - MER57A LTR ERV1 -2 401 8 255 170 196 71 chrX 77786357 77786469 -99187671 - LTR49-int LTR ERV1 -4835 1496 1371 586 243 54 38 chrX 77787226 77787465 -99186675 - MER34B LTR ERV1 -3 562 320 283 299 84 9 chrX 77787596 77787703 -99186437 - MER34B LTR ERV1 -441 124 10 449 194 7 115 chrX 77787716 77787855 -99186285 - MLT1D LTR MaLR -396 109 1 203 313 24 12 chrX 77787857 77787940 -99186200 + MIR SINE MIR 70 153 -109 2268 95 0 0 chrX 77787952 77788236 -99185904 + AluSx SINE Alu 4 287 -25 2161 93 38 0 chrX 77788244 77788533 -99185607 + AluY SINE Alu 3 302 -9 644 156 80 76 chrX 77788605 77788786 -99185354 + MER39 LTR ERV1 1 144 -509 * 1537 191 61 40 chrX 77788783 77789159 -99184981 + MER39 LTR ERV1 324 707 0 262 115 33 0 chrX 77789327 77789388 -99184752 + (TA)n Simple_repeat Simple_repeat 1 63 0 876 179 13 7 chrX 77790344 77790495 -99183645 + L1PA15-16 LINE L1 212 363 -6486 2114 256 22 18 chrX 77790501 77791170 -99182970 + L1PA15-16 LINE L1 2767 3438 -3411 2610 235 63 6 chrX 77791189 77791836 -99182304 + MER50 LTR ERV1 51 734 0 3063 213 3 21 chrX 77791862 77792621 -99181519 + L1 LINE L1 3877 4621 -2228 181 79 0 53 chrX 77792871 77792909 -99181231 + (GAA)n Simple_repeat Simple_repeat 1 36 0 3441 228 23 21 chrX 77795906 77796830 -99177310 + L1 LINE L1 4618 5543 -1306 3192 175 7 5 chrX 77796838 77797420 -99176720 + L1PA16 LINE L1 5576 6158 -8 23 33 0 0 chrX 77797420 77797450 -99176690 + AT_rich Low_complexity Low_complexity 1 30 0 2809 222 32 10 chrX 77847500 77848186 -99125954 + L1MC3 LINE L1 7083 7783 -2 297 370 0 17 chrX 77848460 77848579 -99125561 - L2 LINE L2 0 3313 3197 526 282 45 6 chrX 77848640 77848796 -99125344 + MIR SINE MIR 46 207 -55 366 91 0 0 chrX 77848956 77849011 -99125129 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chrX 77850312 77850334 -99123806 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chrX 77851303 77851339 -99122801 + AT_rich Low_complexity Low_complexity 1 36 0 284 274 24 0 chrX 77851896 77851980 -99122160 - MIR3 SINE MIR -2 206 121 6824 178 24 4 chrX 77852094 77854160 -99119980 - L1MA3 LINE L1 -240 6065 3958 3616 87 11 30 chrX 77854164 77854705 -99119435 - L1PA13 LINE L1 -5 6158 5628 2418 197 0 2 chrX 77854805 77855283 -99118857 + L1 LINE L1 4526 5002 -1144 1731 100 0 0 chrX 77855351 77855580 -99118560 - AluSq SINE Alu -84 229 1 1564 173 62 58 chrX 77855580 77855926 -99118214 - L1 LINE L1 -1486 4660 4310 2395 85 0 0 chrX 77855926 77856233 -99117907 - AluSc SINE Alu -2 307 1 1564 173 62 58 chrX 77856233 77856302 -99117838 - L1 LINE L1 -1836 4310 4243 3862 188 7 3 chrX 77856303 77857038 -99117102 + L1 LINE L1 3499 4236 -1910 949 267 76 21 chrX 77857043 77857508 -99116632 - L1M4b LINE L1 -5938 921 400 252 212 0 0 chrX 77857789 77857855 -99116285 + (TA)n Simple_repeat Simple_repeat 1 66 0 591 219 39 0 chrX 77857857 77857985 -99116155 - L1M4b LINE L1 -6717 142 10 509 245 35 0 chrX 77858001 77858144 -99115996 + MER63 DNA MER1_type 913 1060 0 2358 86 0 19 chrX 77858329 77858644 -99115496 - AluSg SINE Alu -1 309 1 34 42 0 0 chrX 77859564 77859612 -99114528 + AT_rich Low_complexity Low_complexity 1 48 0 265 330 0 0 chrX 77860393 77860505 -99113635 + L1M4 LINE L1 2513 2624 -3522 400 303 109 49 chrX 77860636 77861002 -99113138 + L1MEc LINE L1 1711 2098 -4298 370 286 14 48 chrX 77861073 77861283 -99112857 - L1M4 LINE L1 -3430 2716 2514 3666 252 71 12 chrX 77861315 77862816 -99111324 + L1MEc LINE L1 2171 3714 -2501 301 323 0 0 chrX 77862816 77862881 -99111259 + Tigger2 DNA MER2_type 2654 2718 0 267 205 27 89 chrX 77862881 77862993 -99111147 - L1 LINE L1 -2399 5166 5062 1436 116 26 0 chrX 77862993 77863226 -99110914 - Tigger2 DNA MER2_type -76 2642 2404 * 1638 198 73 0 chrX 77863224 77863582 -99110558 - Tigger2 DNA MER2_type -2333 385 2 4805 253 40 11 chrX 77863583 77865068 -99109072 + L1MEc LINE L1 3815 5341 -874 513 169 7 81 chrX 77865067 77865203 -99108937 + L1MB8 LINE L1 6052 6177 -1 * 321 271 0 66 chrX 77865240 77865406 -99108734 + L1M4 LINE L1 2338 2492 -3654 642 268 76 39 chrX 77865508 77865971 -99108169 + L1M4 LINE L1 2685 3164 -2982 323 188 100 25 chrX 77866506 77866586 -99107554 - MIR SINE MIR -74 188 103 1739 163 16 28 chrX 77867371 77867690 -99106450 + MER47A DNA MER2_type 52 366 0 1963 145 7 0 chrX 77868443 77868740 -99105400 - AluSx SINE Alu -13 299 1 8452 197 30 7 chrX 77869131 77871139 -99103001 - L1 LINE L1 -5314 2251 13 5614 220 80 61 chrX 77871148 77871421 -99102719 - L1MC3 LINE L1 -334 7451 7185 238 234 0 0 chrX 77871421 77871468 -99102672 - MLT1H LTR MaLR -418 131 85 5614 220 80 61 chrX 77871468 77872439 -99101701 - L1MC3 LINE L1 -600 7185 6117 2155 104 14 0 chrX 77872439 77872736 -99101404 - AluSp SINE Alu -12 301 1 5614 220 80 61 chrX 77872736 77873203 -99100937 - L1MC3 LINE L1 -1668 6117 5660 450 0 0 0 chrX 77873206 77873256 -99100884 + (TTTTA)n Simple_repeat Simple_repeat 5 54 0 312 191 119 79 chrX 77873259 77873385 -99100755 - L1MC3 LINE L1 -861 5472 5342 213 318 124 39 chrX 77873479 77873608 -99100532 + MIR SINE MIR 71 210 -52 30 0 0 0 chrX 77873662 77873692 -99100448 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 77874320 77874341 -99099799 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 77875706 77875730 -99098410 + AT_rich Low_complexity Low_complexity 1 24 0 2241 93 0 7 chrX 77876017 77876307 -99097833 + AluSx SINE Alu 1 288 -24 269 51 26 0 chrX 77876679 77876718 -99097422 + (TA)n Simple_repeat Simple_repeat 2 41 0 1763 116 0 0 chrX 77876744 77877002 -99097138 - L1PA13 LINE L1 -4 6159 5902 723 110 20 9 chrX 77877003 77877120 -99097020 + L1PA13 LINE L1 5802 5913 -238 775 232 16 112 chrX 77877859 77877937 -99096203 - MLT2D LTR ERVL -13 507 423 194 0 39 0 chrX 77877937 77877963 -99096177 + (GA)n Simple_repeat Simple_repeat 2 28 0 775 232 16 112 chrX 77877963 77878242 -99095898 - MLT2D LTR ERVL -97 423 83 29 70 0 0 chrX 77879815 77879872 -99094268 + AT_rich Low_complexity Low_complexity 1 57 0 2270 220 133 70 chrX 77879934 77880125 -99094015 + L1MB7 LINE L1 3966 4144 -2002 1610 160 53 27 chrX 77880125 77880425 -99093715 + AluJo SINE Alu 3 310 -2 2270 220 133 70 chrX 77880425 77881397 -99092743 + L1MB7 LINE L1 4144 5202 -944 1883 263 32 4 chrX 77881397 77881902 -99092238 + LTR53 LTR ERVL 1 519 0 2391 226 26 36 chrX 77883154 77883846 -99090294 - L1M3 LINE L1 -396 5787 5117 1717 125 50 43 chrX 77883846 77884126 -99090014 + AluSx SINE Alu 4 285 -27 2391 226 26 36 chrX 77884126 77884352 -99089788 - L1M3 LINE L1 -1066 5117 4890 618 196 45 15 chrX 77884355 77884488 -99089652 + HERVL74 LTR ERVL 1181 1317 -4368 4029 164 20 8 chrX 77884570 77885273 -99088867 - MER50 LTR ERV1 -23 711 1 450 218 24 19 chrX 77885273 77885485 -99088655 + HERVL74 LTR ERVL 1313 1624 -4061 1995 258 62 81 chrX 77885782 77886534 -99087606 + MER21B LTR ERV1 17 754 -109 2406 210 23 6 chrX 77886548 77887020 -99087120 + HERVL74 LTR ERVL 1623 2102 -3583 806 195 6 17 chrX 77887176 77887350 -99086790 + HERVL74 LTR ERVL 2091 2262 -3423 4176 115 14 62 chrX 77887362 77888073 -99086067 + LTR8 LTR ERV1 1 677 -14 4156 239 34 10 chrX 77888081 77888477 -99085663 + HERVL74 LTR ERVL 2343 2728 -2957 2222 172 86 40 chrX 77888477 77888683 -99085457 - LTR49 LTR ERV1 0 595 400 1937 157 0 16 chrX 77888683 77888988 -99085152 + AluJo SINE Alu 9 308 -4 2222 172 86 40 chrX 77888988 77889350 -99084790 - LTR49 LTR ERV1 -195 400 1 4156 239 34 10 chrX 77889350 77889938 -99084202 + HERVL74 LTR ERVL 2728 3350 -2335 2055 218 27 57 chrX 77890162 77890675 -99083465 + LTR53 LTR ERVL 1 498 -21 1974 230 45 2 chrX 77890694 77891349 -99082791 + L1MB7 LINE L1 5197 5883 -301 858 264 23 5 chrX 77891799 77892015 -99082125 + MER58A DNA MER1_type 1 220 -4 226 333 14 0 chrX 77892029 77892098 -99082042 - MIR3 SINE MIR -15 193 124 888 130 26 7 chrX 77892567 77892721 -99081419 - L1MA3 LINE L1 -1 6304 6148 230 209 0 0 chrX 77892822 77892865 -99081275 - L1P LINE L1 -873 5273 5231 2889 220 29 20 chrX 77892869 77893101 -99081039 - L1 LINE L1 -2199 5366 5137 2882 102 0 5 chrX 77893101 77893514 -99080626 + L1PA13 LINE L1 5748 6158 -5 2889 220 29 20 chrX 77893514 77894018 -99080122 - L1 LINE L1 -2428 5137 4624 1301 128 0 0 chrX 77894034 77894214 -99079926 - AluJb SINE Alu -16 296 117 287 225 0 28 chrX 77894230 77894301 -99079839 - L1P LINE L1 -1188 6377 6309 21008 161 23 6 chrX 77894301 77895311 -99078829 - L1 LINE L1 -3845 3720 2728 2351 81 10 0 chrX 77895311 77895609 -99078531 - AluSc SINE Alu -8 301 1 21008 161 23 6 chrX 77895609 77898237 -99075903 - L1 LINE L1 -4837 2728 22 22 0 0 0 chrX 77898335 77898357 -99075783 + AT_rich Low_complexity Low_complexity 1 22 0 6974 208 32 16 chrX 77898500 77900979 -99073161 + L1PA16 LINE L1 3479 6022 -144 322 219 68 41 chrX 77901012 77901158 -99072982 - L1MC4 LINE L1 -1 8041 7892 2170 166 10 27 chrX 77902122 77902532 -99071608 - MER57A LTR ERV1 0 403 1 1494 121 43 31 chrX 77902532 77902692 -99071448 - MER57A-int LTR ERV1 0 7537 7371 186 43 0 0 chrX 77902692 77902715 -99071425 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1494 121 43 31 chrX 77902715 77902810 -99071330 - MER57A-int LTR ERV1 -166 7371 7279 689 90 90 33 chrX 77902810 77902932 -99071208 - LTR54B LTR ERV1 -367 131 3 3458 127 4 0 chrX 77902932 77903422 -99070718 - MER57A-int LTR ERV1 -391 7146 6655 * 8467 148 28 41 chrX 77903419 77904869 -99069271 - MER57A-int LTR ERV1 -6093 1444 14 2084 163 20 3 chrX 77904869 77905225 -99068915 - MER57A LTR ERV1 -41 362 1 286 351 91 22 chrX 77907061 77907292 -99066848 + MLT1J2 LTR MaLR 59 305 -145 257 278 0 0 chrX 77908356 77908428 -99065712 + L2 LINE L2 2228 2299 -1015 509 258 37 53 chrX 77908523 77908713 -99065427 + L2 LINE L2 3111 3297 -16 988 199 63 22 chrX 77908957 77909308 -99064832 + MSTD LTR MaLR 1 423 -9 1073 252 95 5 chrX 77909325 77909754 -99064386 + L1MD1 LINE L1 5484 5963 -396 450 211 42 0 chrX 77909760 77909855 -99064285 + L1MD1 LINE L1 6085 6183 -59 6586 61 12 4 chrX 77909855 77911123 -99063017 - L1PA7 LINE L1 -8 6146 4911 2891 90 0 2 chrX 77911123 77911524 -99062616 + L1PA7 LINE L1 4520 4919 -1227 248 212 0 15 chrX 77911522 77911588 -99062552 + L1MD1 LINE L1 6177 6241 -1 * 288 109 109 0 chrX 77912200 77912255 -99061885 + L1MA3 LINE L1 6244 6304 -1 21 71 0 0 chrX 77912279 77912321 -99061819 + AT_rich Low_complexity Low_complexity 1 42 0 773 179 0 15 chrX 77912321 77912455 -99061685 - FLAM_C SINE Alu 0 133 2 23 0 0 0 chrX 77913081 77913104 -99061036 + AT_rich Low_complexity Low_complexity 1 23 0 5064 138 17 31 chrX 77913232 77914302 -99059838 + L1PA16 LINE L1 5107 6166 0 374 279 23 64 chrX 77915206 77915378 -99058762 + MIR SINE MIR 72 236 -26 48 53 0 0 chrX 77915396 77915472 -99058668 + AT_rich Low_complexity Low_complexity 1 76 0 1797 222 48 44 chrX 77915561 77916079 -99058061 + MLT2B1 LTR ERVL 1 520 0 1020 293 10 7 chrX 77916079 77916386 -99057754 + HERVL-B1 LTR ERVL 1 308 -5346 582 170 13 7 chrX 77916412 77916565 -99057575 + (TA)n Simple_repeat Simple_repeat 2 155 0 340 169 27 47 chrX 77916577 77916725 -99057415 + (TA)n Simple_repeat Simple_repeat 2 146 0 7322 222 12 23 chrX 77916725 77918275 -99055865 + HERVL-B1 LTR ERVL 385 1918 -3846 7725 182 44 11 chrX 77918277 77919730 -99054410 + ERVL-B1 LTR ERVL 4258 5758 -6 1919 214 100 25 chrX 77919731 77920212 -99053928 + MLT2B1 LTR ERVL 3 519 -1 183 80 0 0 chrX 77921763 77921788 -99052352 + (GA)n Simple_repeat Simple_repeat 1 25 0 211 71 48 0 chrX 77921789 77921831 -99052309 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chrX 77921897 77921927 -99052213 + AT_rich Low_complexity Low_complexity 1 30 0 1082 261 82 13 chrX 77922018 77922324 -99051816 - MSTD LTR MaLR -69 327 1 5790 257 50 43 chrX 77922324 77923379 -99050761 - MSTD-int LTR MaLR 0 1735 689 204 0 37 0 chrX 77923379 77923406 -99050734 + (TTTTG)n Simple_repeat Simple_repeat 2 70 0 2307 64 0 0 chrX 77923406 77923689 -99050451 - AluY SINE Alu -28 283 1 5790 257 50 43 chrX 77923689 77924354 -99049786 - MSTD-int LTR MaLR -1045 690 3 1479 240 67 5 chrX 77924357 77924728 -99049412 - MSTD LTR MaLR 0 396 3 189 0 0 0 chrX 77924750 77924771 -99049369 + (GA)n Simple_repeat Simple_repeat 2 22 0 540 279 181 21 chrX 77925427 77925714 -99048426 - LTR16C LTR ERVL -2 489 157 26 64 0 0 chrX 77925849 77925896 -99048244 + AT_rich Low_complexity Low_complexity 1 47 0 1691 142 65 39 chrX 77927617 77927955 -99046185 + THE1C LTR MaLR 1 347 -28 9692 132 11 37 chrX 77927955 77929565 -99044575 + THE1C-int LTR MaLR 8 1576 -4 1720 149 44 16 chrX 77929571 77929892 -99044248 + THE1C LTR MaLR 3 332 -43 441 94 16 0 chrX 77929992 77930056 -99044084 + THE1C LTR MaLR 300 364 0 307 382 15 34 chrX 77930674 77930936 -99043204 - L1ME4a LINE L1 -224 5897 5641 3739 176 46 92 chrX 77930964 77932285 -99041855 - L1MA7 LINE L1 -1 6290 5042 2841 185 87 0 chrX 77932291 77932820 -99041320 + Tigger4(Zombi) DNA MER2_type 4 578 -2153 2728 181 45 15 chrX 77932817 77933353 -99040787 - MER7C DNA MER2_type -49 553 2 * 446 238 66 13 chrX 77933369 77933520 -99040620 + L1M4 LINE L1 3073 3231 -2915 21 0 0 0 chrX 77933749 77933770 -99040370 + AT_rich Low_complexity Low_complexity 1 21 0 2699 156 2 45 chrX 77933774 77934281 -99039859 + L1PA15 LINE L1 5681 6165 0 1059 273 37 56 chrX 77934284 77934345 -99039795 + L1M4 LINE L1 3607 3668 -2478 543 31 0 0 chrX 77934345 77934410 -99039730 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1059 273 37 56 chrX 77934410 77934547 -99039593 + L1M4 LINE L1 3668 3806 -2340 2268 64 4 0 chrX 77934547 77934874 -99039266 + AluY SINE Alu 1 328 0 1059 273 37 56 chrX 77934874 77935300 -99038840 + L1M4 LINE L1 3806 4221 -1925 * 1129 298 47 14 chrX 77935282 77935775 -99038365 + L1MCb LINE L1 433 941 -5104 226 297 34 46 chrX 77935786 77935961 -99038179 - L1ME LINE L1 -331 5790 5618 469 157 0 0 chrX 77935997 77936067 -99038073 - AluS SINE Alu -22 290 221 303 288 25 0 chrX 77936078 77936158 -99037982 + MLT1E2 LTR MaLR 166 247 -379 2135 120 0 0 chrX 77936586 77936886 -99037254 + AluSx SINE Alu 1 300 -12 5808 220 42 14 chrX 77937473 77938742 -99035398 + L1MA2 LINE L1 22 1325 -6240 8600 192 27 7 chrX 77938747 77939995 -99034145 + L1MA2 LINE L1 4814 6128 -1595 450 0 0 0 chrX 77939995 77940045 -99034095 + (CA)n Simple_repeat Simple_repeat 1 50 0 8600 192 27 7 chrX 77940045 77940987 -99033153 + L1MA2 LINE L1 6128 7050 -673 2590 134 27 2 chrX 77940987 77941428 -99032712 + L1MA2 LINE L1 7258 7715 -8 180 0 0 0 chrX 77941741 77941761 -99032379 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 236 224 35 0 chrX 77941879 77941964 -99032176 - L1MA9 LINE L1 -2 6310 6223 * 589 224 0 19 chrX 77941956 77941990 -99032150 - L1MB8 LINE L1 -340 6859 6826 863 102 8 0 chrX 77941990 77942118 -99032022 - L1MA2 LINE L1 -7 6297 6169 589 224 0 19 chrX 77942118 77942240 -99031900 - L1MB8 LINE L1 -373 6826 6707 1913 148 0 0 chrX 77942240 77942524 -99031616 + AluSx SINE Alu 1 284 -28 521 200 61 0 chrX 77942555 77942670 -99031470 - L1MB8 LINE L1 -616 6717 6596 * 6429 208 51 7 chrX 77942669 77944284 -99029856 - L1MB8 LINE L1 -1032 6135 4449 2477 11 0 0 chrX 77944284 77944555 -99029585 - AluYa5 SINE Alu -13 298 28 2204 274 31 14 chrX 77944559 77945610 -99028530 - L1MB8 LINE L1 -4473 2695 1621 987 247 74 11 chrX 77946730 77946809 -99027331 - L1MCa LINE L1 -3656 2908 2835 234 0 0 0 chrX 77946809 77946835 -99027305 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1879 119 0 34 chrX 77946837 77947130 -99027010 - AluSq SINE Alu -30 283 1 987 247 74 11 chrX 77947130 77947635 -99026505 - L1MCa LINE L1 -3729 2835 2285 * 1427 276 31 51 chrX 77947615 77947637 -99026503 - L1MCa LINE L1 -5396 649 628 1802 151 27 3 chrX 77947637 77947975 -99026165 + L1MA9 LINE L1 5965 6310 -2 1427 276 31 51 chrX 77947975 77948539 -99025601 - L1MCa LINE L1 -5417 628 75 324 100 0 0 chrX 77948662 77948712 -99025428 - L1 LINE L1 -1313 4833 4784 9370 168 39 12 chrX 77948712 77950450 -99023690 - Ricksha DNA DNA -557 2689 905 1461 279 51 14 chrX 77950450 77950937 -99023203 - MLT2B2 LTR ERVL 0 515 11 285 237 0 0 chrX 77950938 77950997 -99023143 - Ricksha DNA DNA -900 354 296 6721 153 44 69 chrX 77950998 77952440 -99021700 + Tigger2 DNA MER2_type 557 1962 -756 970 328 40 12 chrX 77952443 77952843 -99021297 + L1M2 LINE L1 10 420 -6429 351 278 54 135 chrX 77953511 77953903 -99020237 + L1M2 LINE L1 709 1068 -5781 4089 100 20 3 chrX 77954028 77954618 -99019522 + MER4A LTR ERV1 1 600 0 7076 246 44 7 chrX 77954790 77957086 -99017054 + L1PA15-16 LINE L1 1246 3626 -3223 14108 184 24 9 chrX 77957202 77961017 -99013123 - L1MA1 LINE L1 -279 6023 2150 1412 256 98 19 chrX 77961034 77961464 -99012676 - MLT2B1 LTR ERVL -56 464 1 439 107 0 13 chrX 77961471 77961546 -99012594 + THE1C-int LTR MaLR 1507 1580 0 1994 131 77 14 chrX 77961548 77961899 -99012241 + THE1C LTR MaLR 3 375 0 398 311 0 0 chrX 77961899 77962021 -99012119 - MLT1A1-int LTR MaLR -1570 165 44 637 72 0 108 chrX 77962034 77962145 -99011995 - L1MA3 LINE L1 -9 6296 6198 836 232 163 56 chrX 77962196 77962515 -99011625 - MLT1A1 LTR MaLR -12 353 1 7123 234 13 9 chrX 77962517 77964031 -99010109 - ERVL LTR ERVL -3828 1936 417 947 213 105 0 chrX 77964993 77965270 -99008870 - MER33 DNA MER1_type -4 320 15 22 35 0 0 chrX 77965755 77965784 -99008356 + AT_rich Low_complexity Low_complexity 1 29 0 434 165 25 0 chrX 77965884 77965963 -99008177 - Tigger5 DNA MER2_type 0 2323 2243 2165 211 35 7 chrX 77965974 77966405 -99007735 - Tigger5 DNA MER2_type -1871 452 10 184 280 96 88 chrX 77966417 77966542 -99007598 + MIR SINE MIR 118 243 -19 27 73 0 0 chrX 77966991 77967046 -99007094 + AT_rich Low_complexity Low_complexity 1 55 0 32 75 0 0 chrX 77967127 77967194 -99006946 + AT_rich Low_complexity Low_complexity 1 67 0 2276 228 75 2 chrX 77967545 77968362 -99005778 - L1MB7 LINE L1 -357 5827 4944 2533 271 57 65 chrX 77968373 77970187 -99003953 - L1MB7 LINE L1 -1778 4368 2568 1258 207 102 110 chrX 77970188 77970598 -99003542 - MLT1A1-int LTR MaLR -92 1643 1237 496 234 86 82 chrX 77970894 77971198 -99002942 + L1MCa LINE L1 1096 1400 -5026 1531 212 5 81 chrX 77971199 77971619 -99002521 - MLT1B LTR MaLR -2 388 1 3197 261 58 8 chrX 77971665 77972385 -99001755 + L1M4 LINE L1 3829 4624 -1522 1831 149 133 16 chrX 77972385 77972768 -99001372 - MSTA LTR MaLR 0 428 1 3197 261 58 8 chrX 77972768 77973146 -99000994 + L1M4 LINE L1 4624 4982 -1164 3012 196 80 48 chrX 77973164 77973550 -99000590 + L1MC3 LINE L1 6865 7237 -548 3306 175 30 57 chrX 77973550 77974357 -98999783 - LTR1 LTR ERV1 0 785 1 3012 196 80 48 chrX 77974357 77974847 -98999293 + L1MC3 LINE L1 7237 7769 -16 2371 257 63 116 chrX 77974852 77975995 -98998145 + L1MDb LINE L1 28 1110 -5299 1149 152 23 8 chrX 77976086 77976386 -98997754 - L1M2 LINE L1 -743 5403 5180 257 29 0 0 chrX 77976389 77976424 -98997716 + L1MA7 LINE L1 6236 6270 -21 2010 273 98 24 chrX 77976459 77977390 -98996750 + L1MDb LINE L1 1239 2238 -4168 471 290 26 0 chrX 77977389 77977582 -98996558 + L1MDb LINE L1 3275 3472 -2934 * 306 204 97 11 chrX 77977600 77977693 -98996447 + L1MD1 LINE L1 6103 6203 -39 2657 221 11 81 chrX 77977823 77978161 -98995979 + L1MCa LINE L1 29 66 -5841 2119 45 0 0 chrX 77978161 77978461 -98995679 - AluY SINE Alu 0 333 34 2657 221 11 81 chrX 77978461 77978929 -98995211 + L1MCa LINE L1 66 565 -5342 2760 211 58 7 chrX 77978931 77979538 -98994602 + LTR9B LTR ERV1 7 644 0 2868 203 34 19 chrX 77979538 77980163 -98993977 + HUERS-P3 LTR ERV1 1 634 -8285 4922 176 30 12 chrX 77980200 77981085 -98993055 + HUERS-P3 LTR ERV1 752 1652 -7267 * 9197 165 14 2 chrX 77981082 77982558 -98991582 + HUERS-P3 LTR ERV1 1791 3284 -5635 742 167 91 0 chrX 77982551 77982683 -98991457 + HUERS-P3 LTR ERV1 4539 4682 -4237 * 1544 152 64 0 chrX 77982684 77982934 -98991206 + HUERS-P3 LTR ERV1 4901 5166 -3753 * 3474 198 13 5 chrX 77982925 77983560 -98990580 + HUERS-P3 LTR ERV1 6273 6912 -2007 490 212 0 9 chrX 77983570 77983683 -98990457 + HUERS-P3 LTR ERV1 6874 6985 -1934 780 149 30 6 chrX 77983684 77983852 -98990288 + HUERS-P3 LTR ERV1 3954 4125 -3691 1442 167 7 11 chrX 77984162 77984427 -98989713 + HUERS-P3 LTR ERV1 6828 8919 0 2097 234 65 13 chrX 77984433 77984958 -98989182 + LTR9B LTR ERV1 7 558 -86 1256 167 7 92 chrX 77984958 77985264 -98988876 - LTR4 LTR ERV1 0 596 317 290 250 0 0 chrX 77985350 77985410 -98988730 - LTR4 LTR ERV1 -239 357 298 422 223 40 2 chrX 77985534 77985647 -98988493 + LTR9B LTR ERV1 557 644 0 1917 222 49 49 chrX 77985685 77986625 -98987515 + L1MCa LINE L1 609 1531 -4895 2547 60 0 0 chrX 77986625 77986924 -98987216 + AluY SINE Alu 1 299 -12 1917 222 49 49 chrX 77986924 77987000 -98987140 + L1MCa LINE L1 1531 1605 -4821 239 111 22 22 chrX 77987031 77987076 -98987064 + MER4A LTR ERV1 54 98 -566 1760 152 3 46 chrX 77987076 77987437 -98986703 + MER4A LTR ERV1 261 664 0 2295 213 107 8 chrX 77987441 77988144 -98985996 + L1MCa LINE L1 1702 2473 -3953 844 241 44 0 chrX 77988142 77988370 -98985770 + L1MCa LINE L1 3878 4115 -2311 * 3245 152 18 8 chrX 77988372 77988986 -98985154 + MER4B LTR ERV1 3 779 0 1692 131 51 11 chrX 77988986 77989182 -98984958 + MER4B-int LTR ERV1 1 213 -6545 182 31 0 62 chrX 77989182 77989214 -98984926 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1692 131 51 11 chrX 77989214 77989291 -98984849 + MER4B-int LTR ERV1 213 285 -6473 3365 202 8 5 chrX 77989314 77989929 -98984211 + MER4B-int LTR ERV1 225 841 -5917 828 127 22 0 chrX 77989958 77990092 -98984048 + MER4B-int LTR ERV1 924 1060 -5698 198 103 0 0 chrX 77990125 77990154 -98983986 + (TG)n Simple_repeat Simple_repeat 2 30 0 488 215 26 97 chrX 77990185 77990380 -98983760 + MER4B-int LTR ERV1 2015 2195 -3751 6124 111 39 6 chrX 77990380 77991369 -98982771 + L1PB1 LINE L1 1384 2405 -4458 249 227 42 8 chrX 77991369 77991488 -98982652 + (TA)n Simple_repeat Simple_repeat 2 124 0 10232 186 34 5 chrX 77991489 77993093 -98981047 + L1PB1 LINE L1 3494 5051 -1816 504 0 0 0 chrX 77993093 77993149 -98980991 + (TAAAA)n Simple_repeat Simple_repeat 2 57 0 10232 186 34 5 chrX 77993149 77994833 -98979307 + L1PB1 LINE L1 5051 6866 -1 2512 210 35 7 chrX 77994877 77995449 -98978691 - L1MB3 LINE L1 -10 6173 5586 22 35 0 0 chrX 77995461 77995490 -98978650 + AT_rich Low_complexity Low_complexity 1 29 0 257 273 61 10 chrX 77996018 77996117 -98978023 + MLT1I LTR MaLR 304 407 -2 393 315 60 78 chrX 77996795 77997179 -98976961 + L1MEd LINE L1 100 476 -5643 259 273 120 9 chrX 77997299 77997633 -98976507 + L1MEd LINE L1 2840 3210 -2919 1501 200 14 0 chrX 77997856 77998136 -98976004 + AluJb SINE Alu 1 284 -28 408 281 59 23 chrX 77998226 77998447 -98975693 + L1MEd LINE L1 3531 3759 -2370 25 0 0 0 chrX 77998552 77998577 -98975563 + AT_rich Low_complexity Low_complexity 1 25 0 267 300 0 10 chrX 77998664 77998764 -98975376 + L1MEd LINE L1 4058 4156 -1973 2125 70 0 22 chrX 77998765 77999037 -98975103 - AluY SINE Alu -9 302 37 1950 78 0 37 chrX 77999172 77999440 -98974700 + AluSx SINE Alu 4 261 -51 674 44 11 0 chrX 77999440 77999530 -98974610 + (CATAA)n Simple_repeat Simple_repeat 4 94 0 26 50 0 0 chrX 77999578 77999618 -98974522 + AT_rich Low_complexity Low_complexity 1 40 0 370 312 155 4 chrX 77999638 78000109 -98974031 - L1M4 LINE L1 -1495 4651 4110 1555 301 75 37 chrX 78000236 78001643 -98972497 - L1M4 LINE L1 -2046 4100 2641 323 339 75 11 chrX 78002142 78002316 -98971824 - L1M4 LINE L1 -1922 4224 4040 21 0 0 0 chrX 78002328 78002349 -98971791 + AT_rich Low_complexity Low_complexity 1 21 0 521 197 31 16 chrX 78002535 78002662 -98971478 + L1PBa LINE L1 1 129 -6734 237 339 18 46 chrX 78052811 78052920 -98921220 + MER5A DNA MER1_type 12 117 -72 21 0 0 0 chrX 78052929 78052950 -98921190 + AT_rich Low_complexity Low_complexity 1 21 0 561 244 119 6 chrX 78053680 78053840 -98920300 + MIR SINE MIR 36 213 -49 326 141 0 0 chrX 78054058 78054122 -98920018 - L1PA15 LINE L1 -1 6164 6101 448 310 23 12 chrX 78054401 78054572 -98919568 + GA-rich Low_complexity Low_complexity 3 175 0 1749 177 10 6 chrX 78054671 78054982 -98919158 - AluJb SINE Alu 0 312 1 222 118 0 0 chrX 78055093 78055127 -98919013 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 225 270 36 117 chrX 78056473 78056584 -98917556 + MIR SINE MIR 63 164 -98 13705 154 25 16 chrX 78057057 78057620 -98916520 + Tigger1 DNA MER2_type 8 564 -1854 2643 10 0 0 chrX 78057620 78057910 -98916230 - AluY SINE Alu -5 306 17 13705 154 25 16 chrX 78057910 78059529 -98914611 + Tigger1 DNA MER2_type 564 2167 -251 192 40 0 0 chrX 78059529 78059554 -98914586 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1622 185 14 7 chrX 78059558 78059844 -98914296 - AluJo SINE Alu -24 288 1 13705 154 25 16 chrX 78059844 78060044 -98914096 + Tigger1 DNA MER2_type 2169 2418 0 896 347 35 44 chrX 78060056 78060664 -98913476 + L1PA16 LINE L1 788 1389 -6185 300 297 0 20 chrX 78060777 78060878 -98913262 + L1PA16 LINE L1 2084 2182 -5399 10814 217 51 41 chrX 78061130 78064080 -98910060 + L1PA16 LINE L1 2199 5118 -2486 1258 70 0 0 chrX 78064080 78064236 -98909904 - AluSg SINE Alu -154 156 1 10814 217 51 41 chrX 78064236 78065331 -98908809 + L1PA16 LINE L1 5118 6200 -1404 1690 191 7 3 chrX 78065331 78065625 -98908515 - AluJb SINE Alu -16 296 2 10814 217 51 41 chrX 78065625 78066772 -98907368 + L1PA16 LINE L1 6200 7603 -1 244 357 23 39 chrX 78066829 78066958 -98907182 + MLT1H1 LTR MaLR 347 473 -82 24 32 0 0 chrX 78066970 78067001 -98907139 + AT_rich Low_complexity Low_complexity 1 31 0 199 365 47 0 chrX 78067229 78067314 -98906826 - L2 LINE L2 -503 2811 2723 281 259 0 24 chrX 78067556 78067641 -98906499 - L2 LINE L2 -1080 2234 2152 23 0 0 0 chrX 78067809 78067832 -98906308 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chrX 78068147 78068180 -98905960 + AT_rich Low_complexity Low_complexity 1 33 0 382 338 116 5 chrX 78068839 78069037 -98905103 + MIR SINE MIR 37 256 -6 1500 249 20 9 chrX 78070275 78070620 -98903520 - MLT1A1 LTR MaLR -3 362 14 338 234 102 55 chrX 78071247 78071503 -98902637 + L1MC5 LINE L1 7536 7803 -158 664 340 46 11 chrX 78072753 78073015 -98901125 - LTR33 LTR ERVL -250 271 1 362 354 0 0 chrX 78073023 78073150 -98900990 - MLT1K LTR MaLR -108 480 354 277 346 0 20 chrX 78073289 78073390 -98900750 - MLT1K LTR MaLR -324 264 166 233 0 0 59 chrX 78073480 78073514 -98900626 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 230 286 0 65 chrX 78073657 78073734 -98900406 - MER5B DNA MER1_type -103 75 4 30812 111 13 65 chrX 78074426 78080925 -98893215 - L1PA7 LINE L1 -1 6153 12 2003 135 3 3 chrX 78081029 78081317 -98892823 + AluSx SINE Alu 3 290 -22 23 0 0 0 chrX 78082298 78082321 -98891819 + AT_rich Low_complexity Low_complexity 1 23 0 701 124 0 0 chrX 78082732 78082837 -98891303 + L1PA8A LINE L1 5998 6102 -29 900 333 38 10 chrX 78083108 78083501 -98890639 + L1M4 LINE L1 534 937 -5922 375 121 0 0 chrX 78083858 78083916 -98890224 + (CA)n Simple_repeat Simple_repeat 1 58 0 290 302 0 0 chrX 78084039 78084135 -98890005 + L1M4 LINE L1 1209 1304 -5555 286 232 61 0 chrX 78084154 78084236 -98889904 - L1M4b LINE L1 -5443 1416 1330 1161 297 93 40 chrX 78084247 78085033 -98889107 + L1M4 LINE L1 1356 2215 -4744 186 103 0 0 chrX 78085033 78085062 -98889078 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1161 297 93 40 chrX 78085062 78085283 -98888857 + L1M4 LINE L1 2215 2423 -4536 1648 244 97 58 chrX 78085451 78085541 -98888599 + L1M4 LINE L1 4876 4961 -1996 191 36 36 0 chrX 78085541 78085569 -98888571 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1648 244 97 58 chrX 78085569 78086355 -98887785 + L1M4 LINE L1 4961 5786 -1171 7920 208 27 126 chrX 78087599 78090132 -98884008 + L1MA3 LINE L1 1 2645 -4564 * 11590 182 29 7 chrX 78090128 78093543 -98880597 + L1MA3 LINE L1 3772 7265 -102 907 138 50 0 chrX 78093584 78093744 -98880396 + L1MA3 LINE L1 6130 6297 -8 3219 221 80 26 chrX 78093759 78095767 -98878373 + L1MC1 LINE L1 1479 3675 -2751 264 191 16 32 chrX 78095775 78095838 -98878302 - MLT2B1 LTR ERVL -161 359 298 2588 241 30 1 chrX 78095900 78096559 -98877581 - L1M4 LINE L1 -1908 5657 4980 1052 252 7 29 chrX 78096587 78096865 -98877275 - AluJo SINE Alu -30 282 11 369 286 50 0 chrX 78096878 78097018 -98877122 - L1M4 LINE L1 -2579 4986 4840 2702 98 5 8 chrX 78097019 78097395 -98876745 - THE1C LTR MaLR 0 375 1 2295 105 0 0 chrX 78097411 78097707 -98876433 - AluSg SINE Alu -14 296 1 644 302 37 0 chrX 78097708 78097897 -98876243 + MLT2B1 LTR ERVL 3 198 -322 5129 211 50 14 chrX 78097966 78098079 -98876061 + L1MC1 LINE L1 4604 4711 -1902 2480 133 3 3 chrX 78098079 78098441 -98875699 - THE1B LTR MaLR -2 362 1 5129 211 50 14 chrX 78098441 78100276 -98873864 + L1MC1 LINE L1 4711 6613 0 8509 216 82 24 chrX 78100379 78102279 -98871861 + L1MC2 LINE L1 5403 7419 -339 2358 81 0 10 chrX 78102279 78102588 -98871552 - AluSc SINE Alu -3 306 1 8509 216 82 24 chrX 78102588 78102937 -98871203 + L1MC2 LINE L1 7419 7747 -11 239 326 20 20 chrX 78103499 78103597 -98870543 - MER5B DNA MER1_type -80 98 1 24 53 0 0 chrX 78103966 78104004 -98870136 + AT_rich Low_complexity Low_complexity 1 38 0 2332 150 16 60 chrX 78104697 78105144 -98868996 - MSTB1 LTR MaLR -5 427 1 867 284 58 40 chrX 78106206 78106392 -98867748 - HAL1 LINE L1 0 2507 2326 1903 192 45 33 chrX 78106392 78106813 -98867327 - MSTB LTR MaLR 0 426 1 867 284 58 40 chrX 78106813 78107105 -98867035 - HAL1 LINE L1 -181 2326 2020 1969 166 90 44 chrX 78107121 78107195 -98866945 - L1MA9 LINE L1 0 6312 6243 246 62 0 0 chrX 78107195 78107227 -98866913 + (TA)n Simple_repeat Simple_repeat 2 33 0 1969 166 90 44 chrX 78107227 78107330 -98866810 - L1MA9 LINE L1 -69 6243 6146 1685 158 81 113 chrX 78107330 78107772 -98866368 - MSTA LTR MaLR 0 428 1 1969 166 90 44 chrX 78107772 78108117 -98866023 - L1MA9 LINE L1 -166 6146 5765 1043 238 64 81 chrX 78108114 78108806 -98865334 - L1M4 LINE L1 -3909 3656 2977 * 4898 177 39 45 chrX 78108819 78109499 -98864641 - L1PA16 LINE L1 -8 6158 5475 2318 72 3 7 chrX 78109499 78109803 -98864337 + AluY SINE Alu 1 303 -8 4898 177 39 45 chrX 78109803 78111024 -98863116 - L1PA16 LINE L1 -691 5475 4285 928 152 0 0 chrX 78111050 78111208 -98862932 - L1 LINE L1 -2339 3807 3650 * 2273 200 25 8 chrX 78111205 78111685 -98862455 - L1 LINE L1 -1880 5685 5198 183 100 0 0 chrX 78111685 78111715 -98862425 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 2120 82 0 0 chrX 78111715 78111995 -98862145 - L1PA7 LINE L1 -24 6130 5851 * 4989 224 17 10 chrX 78111989 78113248 -98860892 - L1 LINE L1 -2369 5196 3930 1948 163 73 24 chrX 78113251 78113783 -98860357 - MLT2A2 LTR ERVL 0 554 1 6097 145 23 8 chrX 78113787 78116197 -98857943 - L1 LINE L1 -3638 3927 1444 4415 60 12 5 chrX 78116193 78116789 -98857351 - L1PA5 LINE L1 -829 5317 4718 * 6689 51 1 0 chrX 78116789 78117613 -98856527 + L1PA5 LINE L1 5326 6154 0 7097 172 75 35 chrX 78117615 78119002 -98855138 - L1 LINE L1 -6107 1458 16 23 0 0 0 chrX 78119009 78119032 -98855108 + AT_rich Low_complexity Low_complexity 1 23 0 776 167 0 14 chrX 78120151 78120289 -98853851 - AluJb SINE Alu -176 136 1 13600 187 56 27 chrX 78121613 78124660 -98849480 + L1PB1 LINE L1 1 2958 -3909 1691 113 4 4 chrX 78124660 78124891 -98849249 + AluSx SINE Alu 1 231 -81 13600 187 56 27 chrX 78124891 78126675 -98847465 + L1PB1 LINE L1 2958 4689 -2178 351 0 0 0 chrX 78126675 78126714 -98847426 + (TAAAA)n Simple_repeat Simple_repeat 4 42 0 13600 187 56 27 chrX 78126714 78128416 -98845724 + L1PB1 LINE L1 4689 6867 0 492 321 81 24 chrX 78128498 78128744 -98845396 + MIR SINE MIR 2 261 -1 28 71 0 0 chrX 78129587 78129643 -98844497 + AT_rich Low_complexity Low_complexity 1 56 0 1185 80 0 0 chrX 78130383 78130534 -98843606 + AluY SINE Alu 154 304 -7 199 188 0 50 chrX 78130563 78130643 -98843497 + CT-rich Low_complexity Low_complexity 2 77 0 225 230 90 70 chrX 78131984 78132084 -98842056 - MLT1I LTR MaLR 0 409 308 459 0 0 0 chrX 78132236 78132287 -98841853 + (CA)n Simple_repeat Simple_repeat 1 51 0 27 29 0 0 chrX 78132584 78132618 -98841522 + AT_rich Low_complexity Low_complexity 1 34 0 615 259 92 6 chrX 78132796 78132970 -98841170 - MIR SINE MIR -2 260 72 7235 50 0 1 chrX 78133685 78135274 -98838866 - L1PA5 LINE L1 0 6154 4566 9717 64 0 0 chrX 78135274 78136524 -98837616 + L1P LINE L1 1218 2467 -3679 22 56 0 0 chrX 78136527 78136563 -98837577 + AT_rich Low_complexity Low_complexity 1 36 0 4712 246 15 62 chrX 78137544 78138818 -98835322 - L1M4 LINE L1 -1469 4677 3346 1893 141 73 17 chrX 78138818 78139173 -98834967 + THE1C LTR MaLR 1 375 0 4712 246 15 62 chrX 78139173 78139634 -98834506 - L1M4 LINE L1 -2800 3346 3029 948 202 83 0 chrX 78139634 78139852 -98834288 + MER46A DNA MER2_type 1 236 0 4712 246 15 62 chrX 78139852 78139950 -98834190 - L1M4 LINE L1 -3117 3029 2928 3272 102 10 10 chrX 78139951 78140440 -98833700 - L1PA14 LINE L1 -2 6159 5671 2810 119 26 0 chrX 78140440 78140966 -98833174 + L1PA14 LINE L1 5145 5680 -481 952 251 52 0 chrX 78140956 78141247 -98832893 - L1M4 LINE L1 -3202 2944 2639 * 212 230 14 27 chrX 78141501 78141575 -98832565 + T-rich Low_complexity Low_complexity 3 75 0 954 145 30 30 chrX 78141883 78142083 -98832057 + L1MA7 LINE L1 6089 6288 -3 356 252 13 97 chrX 78142181 78142419 -98831721 + L1MB7 LINE L1 4470 4687 -1459 2630 220 96 14 chrX 78142425 78143225 -98830915 + L1MB7 LINE L1 5256 6121 -63 3203 171 14 36 chrX 78143225 78143864 -98830276 - MER39B LTR ERV1 0 653 29 3893 203 23 87 chrX 78143928 78145119 -98829021 - MER39B-int LTR ERV1 -143 6188 5074 4300 191 35 6 chrX 78145119 78146128 -98828012 - L1 LINE L1 -774 5372 4335 46 19 0 0 chrX 78146131 78146184 -98827956 + AT_rich Low_complexity Low_complexity 1 53 0 239 307 0 0 chrX 78146253 78146328 -98827812 + L1MC4 LINE L1 6840 6914 -1128 24 85 0 0 chrX 78146439 78146498 -98827642 + AT_rich Low_complexity Low_complexity 1 59 0 351 284 94 66 chrX 78146595 78146989 -98827151 + L1M4 LINE L1 4622 5026 -1120 635 179 194 51 chrX 78146991 78147187 -98826953 + MER95 LTR ERV 9 232 -199 1249 155 0 16 chrX 78147188 78147382 -98826758 + AluSg/x SINE Alu 91 281 -31 378 0 0 0 chrX 78147382 78147424 -98826716 + (GAGAA)n Simple_repeat Simple_repeat 3 44 0 474 18 0 0 chrX 78147685 78147740 -98826400 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 22 35 0 0 chrX 78147802 78147831 -98826309 + AT_rich Low_complexity Low_complexity 1 29 0 2703 102 6 0 chrX 78147834 78148196 -98825944 - THE1B LTR MaLR 0 364 1 1693 187 119 22 chrX 78149557 78149926 -98824214 - MSTB LTR MaLR -21 405 1 7695 193 27 54 chrX 78149932 78150255 -98823885 - MSTB-int LTR MaLR -6 1645 1315 2287 99 0 0 chrX 78150255 78150549 -98823591 - AluSg SINE Alu -16 294 1 7695 193 27 54 chrX 78150549 78151728 -98822412 - MSTB-int LTR MaLR -336 1315 190 1350 158 143 15 chrX 78151728 78151993 -98822147 - AluSq SINE Alu -4 299 1 7695 193 27 54 chrX 78151993 78152173 -98821967 - MSTB-int LTR MaLR -1461 190 7 2098 171 60 7 chrX 78152179 78152582 -98821558 - MSTB LTR MaLR 0 426 3 869 382 27 15 chrX 78152904 78153315 -98820825 + L2 LINE L2 8 423 -2891 1908 145 83 14 chrX 78153379 78153730 -98820410 + THE1C LTR MaLR 1 375 0 9908 112 35 35 chrX 78153730 78155309 -98818831 + THE1C-int LTR MaLR 1 1579 -1 2041 131 68 14 chrX 78155310 78155661 -98818479 + THE1C LTR MaLR 1 370 -5 22 0 0 0 chrX 78156467 78156489 -98817651 + AT_rich Low_complexity Low_complexity 1 22 0 2586 120 41 14 chrX 78156669 78157086 -98817054 + MSTA LTR MaLR 1 428 0 2223 112 3 3 chrX 78157281 78157593 -98816547 + AluSx SINE Alu 1 312 0 25 0 0 0 chrX 78158033 78158058 -98816082 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 78159313 78159341 -98814799 + AT_rich Low_complexity Low_complexity 1 28 0 2277 257 66 19 chrX 78159470 78160692 -98813448 - L1MEc LINE L1 -2914 3166 1926 363 261 0 0 chrX 78160733 78160825 -98813315 - L1MEc LINE L1 -5282 788 697 1151 174 0 48 chrX 78160837 78161067 -98813073 - AluJo SINE Alu -8 304 86 505 302 94 97 chrX 78161067 78161471 -98812669 - L1MEc LINE L1 -5376 694 292 3089 148 4 54 chrX 78161639 78162282 -98811858 - MER4B LTR ERV1 0 779 1 1103 289 50 37 chrX 78162548 78163080 -98811060 + L1ME2 LINE L1 5381 5923 -241 2177 110 0 3 chrX 78163080 78163381 -98810759 - AluY SINE Alu -9 302 3 1103 289 50 37 chrX 78163381 78163444 -98810696 + L1ME2 LINE L1 5923 5984 -180 2084 136 0 0 chrX 78163545 78163839 -98810301 + AluSg SINE Alu 1 294 -16 1952 136 13 26 chrX 78164002 78164312 -98809828 + AluSx SINE Alu 3 308 -4 1750 244 82 28 chrX 78164625 78165236 -98808904 - LTR48B LTR ERV1 0 644 1 317 308 69 13 chrX 78165237 78165396 -98808744 - L1M4 LINE L1 -2374 3772 3605 22 0 0 0 chrX 78165819 78165841 -98808299 + AT_rich Low_complexity Low_complexity 1 22 0 229 200 43 0 chrX 78166227 78166297 -98807843 + (TA)n Simple_repeat Simple_repeat 2 74 0 259 379 23 0 chrX 78166536 78166623 -98807517 - MER91A DNA MER1_type -106 90 2 2665 156 13 0 chrX 78166786 78167240 -98806900 - L1PA15 LINE L1 -1 6164 5705 228 238 12 71 chrX 78167341 78167425 -98806715 + LTR4 LTR ERV1 279 357 -239 1008 151 151 21 chrX 78167522 78167760 -98806380 + LTR4 LTR ERV1 328 596 0 11541 123 32 39 chrX 78167760 78169668 -98804472 + HERV3 LTR ERV1 2 1895 -6531 768 150 68 0 chrX 78169643 78169776 -98804364 + MER21-int LTR ERV1 1754 1895 -6531 * 30124 129 21 14 chrX 78169751 78175694 -98798446 + MER21-int LTR ERV1 1754 7730 -696 290 248 8 104 chrX 78175709 78175834 -98798306 + MER21-int LTR ERV1 1945 2057 -2134 2057 148 0 3 chrX 78175919 78176217 -98797923 + AluJb SINE Alu 1 297 -15 361 339 99 48 chrX 78176245 78176537 -98797603 + L1MEd LINE L1 436 742 -5377 508 224 10 0 chrX 78177360 78177458 -98796682 - FLAM_A SINE Alu -34 108 10 4856 249 30 23 chrX 78177670 78178551 -98795589 + L1PBa LINE L1 6 879 -5984 2236 108 74 0 chrX 78178551 78178902 -98795238 - MER51B LTR ERV1 0 377 1 4856 249 30 23 chrX 78178902 78181585 -98792555 + L1PBa LINE L1 879 2655 -4208 2180 172 3 0 chrX 78181585 78181969 -98792171 + L1PB3 LINE L1 5767 6151 -3 22 94 0 0 chrX 78182041 78182105 -98792035 + AT_rich Low_complexity Low_complexity 1 64 0 26 30 0 0 chrX 78182432 78182465 -98791675 + AT_rich Low_complexity Low_complexity 1 33 0 370 272 54 92 chrX 78182476 78182660 -98791480 - MER5B DNA MER1_type 0 178 2 1428 169 33 3 chrX 78182732 78183034 -98791106 + L1MA6 LINE L1 5990 6300 0 27 73 0 0 chrX 78183839 78183894 -98790246 + AT_rich Low_complexity Low_complexity 1 55 0 1060 216 5 0 chrX 78184057 78184270 -98789870 + MER101B LTR ERV1 2 215 -355 184 226 217 78 chrX 78184763 78184878 -98789262 - MER5A DNA MER1_type -22 167 37 323 169 0 26 chrX 78185204 78185281 -98788859 + (CATA)n Simple_repeat Simple_repeat 2 76 0 973 205 75 95 chrX 78185518 78185718 -98788422 + LTR48 LTR ERV1 5 207 -580 2251 74 0 0 chrX 78185718 78186001 -98788139 + AluY SINE Alu 27 309 -2 973 205 75 95 chrX 78186001 78186409 -98787731 + LTR48 LTR ERV1 207 718 -69 316 208 13 13 chrX 78186410 78186486 -98787654 - LTR49 LTR ERV1 0 595 520 2188 215 53 70 chrX 78186486 78186698 -98787442 - LTR8A LTR ERV1 0 727 513 2705 213 31 83 chrX 78186698 78187472 -98786668 + MER50 LTR ERV1 1 734 0 2188 215 53 70 chrX 78187472 78187999 -98786141 - LTR8A LTR ERV1 -214 513 1 716 260 71 21 chrX 78187999 78188364 -98785776 - LTR29 LTR ERV1 -75 569 152 553 237 17 0 chrX 78188376 78188494 -98785646 + AluJb SINE Alu 3 122 -190 4252 131 17 6 chrX 78188494 78189188 -98784952 + MER4E LTR ERV1 78 779 0 2171 133 48 20 chrX 78189195 78189549 -98784591 + THE1B LTR MaLR 1 364 0 788 219 0 0 chrX 78189549 78189695 -98784445 + AluJb SINE Alu 149 294 -18 330 252 89 24 chrX 78189713 78189836 -98784304 - LTR48 LTR ERV1 -656 131 1 1826 118 72 66 chrX 78189904 78190251 -98783889 + THE1B LTR MaLR 1 349 -15 236 135 0 0 chrX 78190251 78190288 -98783852 + THE1B LTR MaLR 319 355 0 11645 95 10 0 chrX 78190288 78191852 -98782288 + THE1B-int LTR MaLR 1 1580 0 1823 169 73 14 chrX 78191852 78192196 -98781944 + THE1B LTR MaLR 1 364 0 1591 136 11 39 chrX 78192358 78192703 -98781437 + MER61B LTR ERV1 1 425 0 2965 158 41 17 chrX 78193338 78193945 -98780195 - LTR29 LTR ERV1 0 653 6 1826 196 24 15 chrX 78194082 78194491 -98779649 - MER39 LTR ERV1 0 707 295 1762 237 124 25 chrX 78194488 78195139 -98779001 + MER50 LTR ERV1 19 734 0 * 246 102 41 20 chrX 78195226 78195275 -98778865 - MER39B LTR ERV1 -413 240 191 418 211 53 23 chrX 78195283 78195416 -98778724 + LTR49-int LTR ERV1 5995 6131 -200 882 151 76 12 chrX 78195421 78195593 -98778547 - MER39B LTR ERV1 -468 185 3 528 243 16 58 chrX 78195652 78195841 -98778299 - MER39B-int LTR ERV1 -149 6182 6002 297 130 0 43 chrX 78195876 78195945 -98778195 - MER4B-int LTR ERV1 -3871 2887 2822 353 169 0 0 chrX 78196025 78196096 -98778044 - L1PB3 LINE L1 -3 6151 6081 1078 75 0 249 chrX 78196096 78196389 -98777751 - L1PA5 LINE L1 -6 6148 5929 3485 161 6 28 chrX 78196389 78197061 -98777079 - L1PB3 LINE L1 -58 6096 5440 278 288 48 14 chrX 78197067 78197213 -98776927 - L1PA15-16 LINE L1 -6712 151 3 390 236 11 0 chrX 78197426 78197515 -98776625 - MER31-int LTR ERV1 -2982 3349 3260 306 237 58 53 chrX 78197649 78197705 -98776435 - MER31-int LTR ERV1 -3456 1480 1426 314 244 41 16 chrX 78197705 78197828 -98776312 - LTR57-int LTR ERVL -4225 1118 993 306 237 58 53 chrX 78197828 78197839 -98776301 - MER31-int LTR ERV1 -3510 1426 1290 424 132 5 257 chrX 78197958 78198041 -98776099 + MER54A LTR ERVL 1 31 -613 1149 71 7 0 chrX 78198041 78198196 -98775944 + L1MA1 LINE L1 6143 6298 -4 424 132 5 257 chrX 78198196 78198295 -98775845 + MER54A LTR ERVL 31 153 -491 1070 285 19 6 chrX 78198512 78198831 -98775309 - MER31-int LTR ERV1 -4101 2230 1908 1048 189 110 84 chrX 78198947 78199251 -98774889 - MER31-int LTR ERV1 -4483 1848 1526 2187 122 3 6 chrX 78199251 78199563 -98774577 - AluSx SINE Alu -1 311 1 1048 189 110 84 chrX 78199563 78199723 -98774417 - MER31-int LTR ERV1 -4805 1526 1372 279 135 19 0 chrX 78199935 78199987 -98774153 - MER31-int LTR ERV1 -4961 1370 1318 1623 213 43 5 chrX 78200234 78200628 -98773512 - MER39 LTR ERV1 0 707 299 10582 272 23 9 chrX 78200650 78201963 -98772177 - LTR16A-int LTR ERVL -2120 3644 2351 2438 62 7 0 chrX 78201963 78202272 -98771868 - AluY SINE Alu 0 311 1 10582 272 23 9 chrX 78202272 78202303 -98771837 - LTR16A-int LTR ERVL -3413 2351 2322 1976 114 75 36 chrX 78202303 78202664 -98771476 + THE1C LTR MaLR 1 375 0 10582 272 23 9 chrX 78202664 78204604 -98769536 - LTR16A-int LTR ERVL -3442 2322 189 5822 198 27 38 chrX 78204653 78205591 -98768549 + ERVL-D LTR ERVL 4382 5302 -462 1005 215 225 0 chrX 78205591 78205889 -98768251 - MER47A DNA MER2_type -1 365 1 5822 198 27 38 chrX 78205889 78206341 -98767799 + ERVL-D LTR ERVL 5302 5757 -7 1736 188 21 47 chrX 78206341 78206766 -98767374 + MLT2D LTR ERVL 1 414 0 242 250 150 20 chrX 78207184 78207284 -98766856 - L2 LINE L2 -12 3301 3189 1565 98 74 0 chrX 78207387 78207643 -98766497 + L1MA2 LINE L1 6030 6304 0 542 191 21 7 chrX 78207657 78207798 -98766342 - L1MB8 LINE L1 -19 6159 6017 433 278 0 6 chrX 78207803 78207983 -98766157 - L1MDb LINE L1 -3616 2924 2746 473 255 54 36 chrX 78208208 78208462 -98765678 - L1MDb LINE L1 -6239 304 17 594 321 69 17 chrX 78208488 78208834 -98765306 - LTR16A LTR ERVL -41 409 46 235 371 35 35 chrX 78208866 78209009 -98765131 - MER5B DNA MER1_type -33 145 3 1691 176 71 31 chrX 78209342 78209666 -98764474 - MER1B DNA MER1_type 0 337 1 444 299 9 0 chrX 78209712 78209819 -98764321 - L2 LINE L2 -1 3271 3164 245 284 78 10 chrX 78209821 78209923 -98764217 + MIR SINE MIR 152 260 -2 915 148 25 5 chrX 78210133 78210329 -98763811 - L1MA7 LINE L1 0 6291 6092 551 181 24 0 chrX 78210335 78210462 -98763678 + L1 LINE L1 3962 4091 -2055 446 276 58 50 chrX 78210539 78210851 -98763289 + L1ME LINE L1 4871 5191 -955 2009 102 25 4 chrX 78210851 78211151 -98762989 + AluSx SINE Alu 1 306 0 446 276 58 50 chrX 78211151 78211233 -98762907 + L1ME LINE L1 5191 5271 -875 269 239 72 31 chrX 78211409 78211623 -98762517 + L1ME LINE L1 5452 5773 -391 781 216 16 0 chrX 78211648 78211838 -98762302 - L1MC3 LINE L1 -1770 6015 5823 1835 234 27 12 chrX 78211839 78212318 -98761822 - L1MC2 LINE L1 -2 6760 6275 1169 244 55 30 chrX 78212321 78212850 -98761290 - L1MC2 LINE L1 -1048 5516 4975 459 286 101 20 chrX 78213197 78213494 -98760646 + LTR43 LTR ERV1 187 507 -95 1078 239 93 71 chrX 78213576 78214341 -98759799 - L1MC2 LINE L1 -1587 4977 4222 1741 250 90 65 chrX 78214348 78215158 -98758982 - L1MC2 LINE L1 -4783 1781 992 2130 128 24 3 chrX 78215158 78215494 -98758646 - MER61A LTR ERV1 0 343 1 1741 250 90 65 chrX 78215494 78216448 -98757692 - L1MC2 LINE L1 -5572 992 69 2300 102 0 3 chrX 78216622 78216917 -98757223 - AluSx SINE Alu -18 294 1 1620 247 103 21 chrX 78217692 78218885 -98755255 + L1MC4 LINE L1 6472 7912 -130 262 313 53 71 chrX 78219012 78219389 -98754751 + L1MCc LINE L1 84 768 -5654 689 298 80 43 chrX 78219603 78220375 -98753765 + L1MCc LINE L1 817 1701 -5240 213 132 0 0 chrX 78220374 78220412 -98753728 + (TG)n Simple_repeat Simple_repeat 2 39 0 * 1190 213 306 10 chrX 78220554 78220949 -98753191 - MER101B LTR ERV1 -51 519 8 21 0 0 0 chrX 78220981 78221002 -98753138 + AT_rich Low_complexity Low_complexity 1 21 0 4498 68 108 2 chrX 78221009 78221631 -98752509 - LTR12 LTR ERV1 0 688 1 1305 132 5 0 chrX 78221675 78221872 -98752268 + MER41B LTR ERV1 438 635 0 5243 150 44 11 chrX 78221873 78223264 -98750876 + MER41B-int LTR ERV1 2 3585 -4231 680 158 0 0 chrX 78223266 78223380 -98750760 + MER41A-int LTR ERV1 1901 2014 -3932 * 10203 139 41 25 chrX 78223379 78226133 -98748007 + MER41A-int LTR ERV1 2167 4553 -462 1896 123 30 7 chrX 78226130 78226430 -98747710 + MER41A-int LTR ERV1 5638 5944 -2 * 3200 140 29 20 chrX 78226430 78226979 -98747161 + MER41A LTR ERV1 1 554 0 311 262 69 0 chrX 78226998 78227143 -98746997 + L1MCc LINE L1 2329 2483 -4458 637 245 128 15 chrX 78227276 78227472 -98746668 + L1MCc LINE L1 619 836 -6105 497 304 86 34 chrX 78227482 78228079 -98746061 - L1MC/D LINE L1 -569 5597 4991 21 0 0 0 chrX 78228203 78228224 -98745916 + AT_rich Low_complexity Low_complexity 1 21 0 592 251 12 0 chrX 78228225 78228392 -98745748 - L1MA7 LINE L1 -12 6279 6111 1167 210 0 46 chrX 78228411 78228673 -98745467 - AluJb SINE Alu -62 250 1 26 30 0 0 chrX 78229000 78229033 -98745107 + AT_rich Low_complexity Low_complexity 1 33 0 1063 269 65 27 chrX 78229033 78229695 -98744445 + L1MCc LINE L1 3901 4587 -2354 14013 230 28 10 chrX 78229709 78234876 -98739264 + L1PA15 LINE L1 1212 6477 -339 6924 57 5 7 chrX 78234877 78236042 -98738098 + L1PA7 LINE L1 5000 6162 0 1866 172 15 6 chrX 78236043 78236386 -98737754 + L1PA15 LINE L1 6467 6812 -4 2474 269 57 16 chrX 78236450 78237501 -98736639 + L1MCc LINE L1 4647 5740 -1201 536 171 27 0 chrX 78237530 78237641 -98736499 + L1MB8 LINE L1 1940 2053 -4977 1474 222 0 7 chrX 78237649 78237961 -98736179 + AluJo SINE Alu 1 310 0 840 230 16 5 chrX 78237961 78238152 -98735988 + L1MB8 LINE L1 4811 5003 -2103 2136 151 108 55 chrX 78238153 78238532 -98735608 - LOR1a LTR ERV1 -2 495 138 2148 118 3 0 chrX 78238532 78238836 -98735304 + AluSp SINE Alu 1 305 -8 2136 151 108 55 chrX 78238836 78238857 -98735283 - LOR1a LTR ERV1 -359 138 120 2612 147 95 42 chrX 78238857 78239436 -98734704 - LTR66 LTR ERVL 0 610 1 2136 151 108 55 chrX 78239436 78239504 -98734636 - LOR1a LTR ERV1 -377 120 1 3220 168 68 19 chrX 78239518 78240197 -98733943 + L1MA8 LINE L1 5558 6269 -22 2603 274 46 6 chrX 78240267 78241189 -98732951 + L1MB8 LINE L1 6174 7136 -2 449 282 95 37 chrX 78241288 78241878 -98732262 - L1MEc LINE L1 -3728 2487 1904 1713 203 129 8 chrX 78243318 78243697 -98730443 + MSTA LTR MaLR 2 426 -2 8331 197 20 2 chrX 78243697 78245222 -98728918 + THE1C-int LTR MaLR 1 1553 -98 1990 131 3 10 chrX 78245442 78245740 -98728400 + AluSp SINE Alu 1 296 -17 1553 212 0 19 chrX 78245753 78246064 -98728076 + AluJb SINE Alu 3 307 -5 21 36 0 0 chrX 78246363 78246391 -98727749 + AT_rich Low_complexity Low_complexity 1 28 0 38 39 0 0 chrX 78247016 78247068 -98727072 + AT_rich Low_complexity Low_complexity 1 52 0 28 86 0 0 chrX 78247146 78247216 -98726924 + AT_rich Low_complexity Low_complexity 1 70 0 2587 116 8 0 chrX 78247762 78248134 -98726006 + THE1C LTR MaLR 1 375 0 8853 132 58 37 chrX 78248134 78249683 -98724457 + THE1C-int LTR MaLR 1 1580 0 2235 150 39 0 chrX 78249683 78250044 -98724096 + THE1C LTR MaLR 1 375 0 34 0 0 0 chrX 78250288 78250322 -98723818 + AT_rich Low_complexity Low_complexity 1 34 0 23 78 0 0 chrX 78250819 78250870 -98723270 + AT_rich Low_complexity Low_complexity 1 51 0 1506 223 0 13 chrX 78251384 78251698 -98722442 - AluJo SINE Alu -2 310 1 1162 204 97 60 chrX 78251952 78252304 -98721836 - MLT1A1 LTR MaLR 0 365 1 21 36 0 0 chrX 78252851 78252879 -98721261 + AT_rich Low_complexity Low_complexity 1 28 0 1610 223 78 13 chrX 78253542 78253937 -98720203 + THE1C LTR MaLR 1 421 -5 2803 200 34 15 chrX 78253956 78254570 -98719570 + THE1C-int LTR MaLR 34 659 -992 307 363 13 32 chrX 78254570 78254727 -98719413 + L2 LINE L2 3148 3301 -12 18117 179 30 14 chrX 78254867 78262452 -98711688 + L1MA1 LINE L1 14 7721 0 1861 283 70 22 chrX 78262602 78263045 -98711095 - L1ME1 LINE L1 -20 6146 5649 432 0 0 0 chrX 78263045 78263093 -98711047 + (TG)n Simple_repeat Simple_repeat 2 49 0 1861 283 70 22 chrX 78263093 78263426 -98710714 - L1ME1 LINE L1 -517 5649 5333 2585 123 0 3 chrX 78263430 78263795 -98710345 + THE1B LTR MaLR 1 364 0 7103 167 87 18 chrX 78263795 78265272 -98708868 + THE1B-int LTR MaLR 1 1580 0 2099 147 43 0 chrX 78265272 78265619 -98708521 + THE1B LTR MaLR 1 362 -2 1122 268 55 14 chrX 78265627 78265864 -98708276 - L1ME1 LINE L1 -816 5330 5104 498 108 0 0 chrX 78265864 78265938 -98708202 + (TA)n Simple_repeat Simple_repeat 1 74 0 1122 268 55 14 chrX 78265938 78266189 -98707951 - L1ME1 LINE L1 -1042 5104 4822 379 325 34 3 chrX 78266718 78266858 -98707282 + MIR SINE MIR 25 168 -63 1933 149 36 36 chrX 78266937 78267300 -98706840 + THE1B LTR MaLR 2 364 0 9556 137 70 0 chrX 78267300 78268777 -98705363 + THE1B-int LTR MaLR 1 1580 0 2018 129 46 34 chrX 78268777 78269126 -98705014 + THE1B LTR MaLR 1 353 -11 226 343 44 7 chrX 78269779 78269916 -98704224 - L2 LINE L2 -1256 2058 1917 1293 245 17 0 chrX 78270860 78271207 -98702933 - L1P LINE L1 -3134 3012 2660 702 260 104 19 chrX 78271209 78271718 -98702422 + LTR28 LTR ERV1 1 1305 -148 3681 217 29 1 chrX 78271758 78272563 -98701577 - L1P LINE L1 -3489 2657 1831 3144 142 5 8 chrX 78272560 78273120 -98701020 + L1PA15 LINE L1 5220 5779 -386 * 440 85 0 0 chrX 78273120 78273179 -98700961 - MLT2A2 LTR ERVL -394 59 1 4336 101 38 0 chrX 78273179 78273810 -98700330 - HERVL-A2 LTR ERVL 0 5654 5000 662 154 8 24 chrX 78273992 78274115 -98700025 + L1PA15 LINE L1 6039 6159 -6 954 237 59 8 chrX 78274125 78274477 -98699663 + L1MC4 LINE L1 5742 6143 -201 180 314 87 48 chrX 78275083 78275290 -98698850 - L2 LINE L2 -6 3307 3093 254 368 36 42 chrX 78275695 78275888 -98698252 - MIR SINE MIR -69 193 2 415 268 50 39 chrX 78276368 78276648 -98697492 + L1ME2 LINE L1 5553 5835 -329 755 236 35 70 chrX 78276651 78276910 -98697230 + L1ME2 LINE L1 5914 6163 -1 192 150 50 0 chrX 78277562 78277602 -98696538 - L2 LINE L2 -1 3312 3271 226 327 93 9 chrX 78277666 78277773 -98696367 - L2 LINE L2 -4 3309 3194 21 36 0 0 chrX 78278084 78278112 -98696028 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chrX 78278246 78278289 -98695851 + AT_rich Low_complexity Low_complexity 1 43 0 395 283 34 34 chrX 78278412 78278589 -98695551 - MER112 DNA MER1_type 0 260 84 1874 128 113 30 chrX 78279015 78279351 -98694789 - THE1B LTR MaLR 0 364 1 1309 151 45 17 chrX 78280107 78280399 -98693741 - L1MA8 LINE L1 -5 6286 5987 231 61 0 0 chrX 78282319 78282352 -98691788 + (TG)n Simple_repeat Simple_repeat 2 34 0 302 296 17 0 chrX 78282609 78282724 -98691416 + MER103 DNA DNA 2 118 -48 351 298 68 58 chrX 78283003 78283373 -98690767 + L1MEd LINE L1 657 1075 -5146 22 0 0 0 chrX 78284342 78284364 -98689776 + AT_rich Low_complexity Low_complexity 1 22 0 383 301 51 10 chrX 78284368 78284564 -98689576 + L1MEd LINE L1 1033 1236 -4969 322 347 136 6 chrX 78284680 78284997 -98689143 + L1MEd LINE L1 1397 1754 -4642 428 325 78 11 chrX 78285311 78285579 -98688561 + L1MEd LINE L1 2062 2347 -4049 371 320 13 44 chrX 78285617 78285704 -98688436 + L1MEd LINE L1 2384 2472 -3743 1331 245 137 54 chrX 78285704 78286280 -98687860 + MLT1E2 LTR MaLR 1 624 -2 371 320 13 44 chrX 78286280 78286420 -98687720 + L1MEd LINE L1 2472 2604 -3611 1292 310 60 32 chrX 78286457 78287019 -98687121 + L1MDb LINE L1 22 599 -5810 276 329 116 12 chrX 78287005 78287169 -98686971 + L1MDb LINE L1 377 557 -5852 * 381 287 41 0 chrX 78287199 78287371 -98686769 + L1MDb LINE L1 663 867 -5542 * 2251 197 31 15 chrX 78287370 78288216 -98685924 - L1M3 LINE L1 -458 6426 5564 4435 119 0 3 chrX 78288223 78288880 -98685260 - L1PB2 LINE L1 -117 6034 5380 * 6327 217 46 10 chrX 78288879 78290265 -98683875 - L1M3 LINE L1 -5310 1553 118 212 158 0 0 chrX 78290343 78290381 -98683759 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 2306 146 50 13 chrX 78290423 78290888 -98683252 + L1MA3 LINE L1 5824 6305 0 1203 257 49 46 chrX 78290911 78291781 -98682359 + L1MDb LINE L1 1543 2508 -3900 232 192 39 0 chrX 78291789 78291841 -98682299 - L1MA9 LINE L1 -5 6307 6254 * 2222 270 43 14 chrX 78291821 78292787 -98681353 + L1MDb LINE L1 2477 3471 -2935 527 265 73 0 chrX 78292819 78292955 -98681185 - L1M4b LINE L1 -5584 1275 1130 642 254 229 43 chrX 78292966 78293246 -98680894 - L1M4b LINE L1 -6437 422 91 2992 129 12 12 chrX 78293515 78294017 -98680123 - L1PA14 LINE L1 -2 6159 5658 514 136 15 0 chrX 78294017 78294149 -98679991 + (TA)n Simple_repeat Simple_repeat 2 135 0 552 106 12 0 chrX 78294159 78294244 -98679896 + L1P4 LINE L1 5553 5638 -523 1272 257 34 47 chrX 78294326 78294556 -98679584 + L1MD2 LINE L1 5921 6144 -215 1896 160 3 6 chrX 78294556 78294868 -98679272 + AluSx SINE Alu 1 311 -1 1272 257 34 47 chrX 78294868 78295080 -98679060 + L1MD2 LINE L1 6144 6357 -2 377 221 108 54 chrX 78295384 78295588 -98678552 + L1ME3A LINE L1 3231 3445 -2961 537 255 91 87 chrX 78295738 78296165 -98677975 - LTR68 LTR ERV1 -311 429 1 443 236 191 24 chrX 78296177 78296423 -98677717 + L1ME3A LINE L1 3456 3742 -2664 276 330 88 15 chrX 78296551 78296893 -98677247 + L1ME3A LINE L1 3813 4179 -2227 342 358 95 15 chrX 78297016 78297290 -98676850 + L1ME3A LINE L1 4277 4572 -1834 315 258 88 57 chrX 78297588 78297782 -98676358 + L1ME3A LINE L1 4543 4742 -1664 786 224 72 57 chrX 78297820 78297884 -98676256 - MLT2B2 LTR ERVL 0 515 453 533 12 62 0 chrX 78297884 78297965 -98676175 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 786 224 72 57 chrX 78297965 78298323 -98675817 - MLT2B2 LTR ERVL -62 453 1 2294 107 0 0 chrX 78298933 78299242 -98674898 + AluSx SINE Alu 1 309 -3 334 77 0 0 chrX 78299506 78299558 -98674582 + AluSp/q SINE Alu 247 298 -5 268 250 125 25 chrX 78299573 78299773 -98674367 + L1ME3A LINE L1 5274 5493 -913 488 302 82 40 chrX 78299810 78300382 -98673758 + L1ME3A LINE L1 5536 6131 -299 9304 206 15 17 chrX 78300550 78301340 -98672800 - L1P LINE L1 -1793 4353 3563 255 103 0 0 chrX 78301340 78301379 -98672761 + (CA)n Simple_repeat Simple_repeat 2 40 0 9304 206 15 17 chrX 78301379 78302642 -98671498 - L1P LINE L1 -2583 3563 2304 24 53 0 0 chrX 78302991 78303029 -98671111 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chrX 78303446 78303482 -98670658 + AT_rich Low_complexity Low_complexity 1 36 0 241 269 0 13 chrX 78303561 78303639 -98670501 + (TA)n Simple_repeat Simple_repeat 1 77 0 243 200 18 18 chrX 78303639 78303694 -98670446 + Tigger5 DNA MER2_type 1 55 -2268 * 338 247 0 0 chrX 78303663 78303736 -98670404 + Tigger5 DNA MER2_type 2251 2323 0 404 236 11 0 chrX 78303789 78303878 -98670262 + Tigger5 DNA MER2_type 2234 2323 0 390 307 65 22 chrX 78303933 78304347 -98669793 + L1ME LINE L1 2557 2988 -3158 308 335 94 32 chrX 78304413 78305133 -98669007 + L1ME LINE L1 4633 5397 -749 610 278 99 57 chrX 78305192 78305595 -98668545 + LTR38 LTR ERV1 137 556 0 399 325 81 10 chrX 78305857 78306054 -98668086 + Charlie2 DNA MER1_type 97 307 -2555 519 236 63 23 chrX 78306266 78306440 -98667700 + Charlie2a DNA MER1_type 1482 1662 -1200 329 259 133 7 chrX 78306436 78306571 -98667569 + Charlie2a DNA MER1_type 2711 2862 0 * 532 297 25 29 chrX 78306587 78306839 -98667301 + L1ME3A LINE L1 5669 5880 -290 232 140 18 18 chrX 78307022 78307079 -98667061 + (CA)n Simple_repeat Simple_repeat 2 58 0 677 243 87 0 chrX 78307459 78307632 -98666508 - MER20 DNA MER1_type -1 218 31 405 0 0 0 chrX 78307697 78307742 -98666398 + (CA)n Simple_repeat Simple_repeat 2 46 0 265 294 55 9 chrX 78307856 78307965 -98666175 + L1ME LINE L1 5531 5644 -477 541 176 11 0 chrX 78308125 78308216 -98665924 - MLT1D LTR MaLR -413 92 1 1429 167 51 42 chrX 78308812 78308926 -98665214 + MER44D DNA MER2_type 1 112 -2379 213 39 0 0 chrX 78308926 78308952 -98665188 + (GA)n Simple_repeat Simple_repeat 1 26 0 1429 167 51 42 chrX 78308952 78309172 -98664968 + MER44D DNA MER2_type 112 608 -1 1507 199 42 52 chrX 78309373 78309779 -98664361 + MER39 LTR ERV1 306 707 0 180 0 0 0 chrX 78309901 78309921 -98664219 + (T)n Simple_repeat Simple_repeat 1 20 0 225 94 0 0 chrX 78309968 78310000 -98664140 - L1MA3 LINE L1 -345 5960 5929 1018 99 25 19 chrX 78310001 78310162 -98663978 + L1MA3 LINE L1 6144 6305 0 2150 243 35 14 chrX 78310412 78310940 -98663200 + MLT2B3 LTR ERVL 1 434 -19 273 57 0 0 chrX 78310942 78310977 -98663163 + (TCTA)n Simple_repeat Simple_repeat 3 37 0 265 167 50 0 chrX 78310982 78311042 -98663098 + MLT2B3 LTR ERVL 458 520 0 2903 119 23 6 chrX 78311477 78311957 -98662183 + L1MA3 LINE L1 5818 6305 0 208 267 0 0 chrX 78313640 78313685 -98660455 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 822 253 5 5 chrX 78314108 78314306 -98659834 + L2 LINE L2 2264 2461 -853 514 179 28 9 chrX 78314505 78314611 -98659529 + L1MA1 LINE L1 6191 6298 -4 207 204 0 0 chrX 78314774 78314818 -98659322 + CT-rich Low_complexity Low_complexity 3 46 0 891 320 74 18 chrX 78314906 78315296 -98658844 + L2 LINE L2 2456 2867 -447 400 335 24 52 chrX 78316566 78316814 -98657326 - LTR33 LTR ERVL -21 500 260 407 202 26 44 chrX 78316826 78316940 -98657200 - Charlie4 DNA MER1_type -15 1946 1835 2005 118 20 3 chrX 78318016 78318320 -98655820 - AluSg SINE Alu -1 309 1 2131 292 74 31 chrX 78318716 78320094 -98654046 + L1M4b LINE L1 12 1528 -5331 4976 225 23 39 chrX 78320099 78321359 -98652781 + L1P LINE L1 3039 4319 -1827 3915 105 30 11 chrX 78321359 78321987 -98652153 - MER51C LTR ERV1 0 640 1 4976 225 23 39 chrX 78321987 78322194 -98651946 + L1P LINE L1 4319 4483 -1663 1824 151 16 13 chrX 78322194 78322498 -98651642 + AluJb SINE Alu 5 309 -3 4976 225 23 39 chrX 78322498 78322526 -98651614 + L1P LINE L1 4483 4510 -1636 222 156 0 0 chrX 78322527 78322572 -98651568 + GA-rich Low_complexity Low_complexity 4 48 0 3133 194 1 37 chrX 78322572 78323293 -98650847 + L1P LINE L1 4480 5174 -972 * 5220 205 15 18 chrX 78323287 78325431 -98648709 + L1PA15 LINE L1 4020 6149 -16 24 0 0 0 chrX 78325519 78325543 -98648597 + AT_rich Low_complexity Low_complexity 1 24 0 233 291 50 25 chrX 78325554 78325753 -98648387 + L1 LINE L1 4384 4587 -1559 5436 143 17 8 chrX 78325832 78327378 -98646762 - L1PA15 LINE L1 -19 6146 4593 326 257 0 0 chrX 78327378 78327452 -98646688 - L1PA15-16 LINE L1 -4348 2449 2376 223 135 0 39 chrX 78327452 78327504 -98646636 + (TA)n Simple_repeat Simple_repeat 2 51 0 291 154 66 0 chrX 78327509 78327645 -98646495 + (ATATG)n Simple_repeat Simple_repeat 1 145 0 208 231 58 10 chrX 78327660 78327764 -98646376 + (TATAA)n Simple_repeat Simple_repeat 5 113 0 234 144 33 67 chrX 78327767 78327947 -98646193 + (TA)n Simple_repeat Simple_repeat 2 175 0 300 108 27 122 chrX 78327951 78328025 -98646115 + L1MC4 LINE L1 2006 2072 -4354 * 309 201 4 37 chrX 78328001 78328096 -98646044 + L1MC4 LINE L1 2006 6983 -1339 2246 232 13 13 chrX 78328135 78328686 -98645454 - L1PA15-16 LINE L1 -4509 2278 1728 800 266 40 0 chrX 78328698 78328875 -98645265 - L1PA15-16 LINE L1 -6603 184 1 673 209 12 127 chrX 78329119 78329271 -98644869 + L1M4 LINE L1 2134 2227 -3919 424 171 0 0 chrX 78329271 78329359 -98644781 + L1MA4 LINE L1 6213 6300 0 673 209 12 127 chrX 78329359 78329546 -98644594 + L1M4 LINE L1 2227 2434 -3712 486 170 98 45 chrX 78329546 78329658 -98644482 - Tigger7 DNA MER2_type 0 2487 2370 213 175 0 0 chrX 78329660 78329700 -98644440 + (TA)n Simple_repeat Simple_repeat 1 40 0 719 256 86 0 chrX 78329789 78330023 -98644117 - L1MDa LINE L1 -3353 3187 2934 1072 251 31 0 chrX 78330046 78330469 -98643671 + L1M4 LINE L1 2750 3185 -2961 315 202 36 24 chrX 78330684 78330768 -98643372 - MER45C DNA AcHobo -341 612 528 1007 197 16 42 chrX 78330788 78330874 -98643266 - L1MDa LINE L1 -5134 1406 1319 1874 218 5 20 chrX 78330874 78331274 -98642866 - MSTD LTR MaLR 0 396 3 1007 197 16 42 chrX 78331274 78331496 -98642644 - L1MDa LINE L1 -5221 1319 1106 1463 161 36 25 chrX 78331678 78331958 -98642182 - AluJo SINE Alu -18 294 12 210 208 0 0 chrX 78332069 78332117 -98642023 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 321 201 43 30 chrX 78332123 78332287 -98641853 + (TA)n Simple_repeat Simple_repeat 2 167 0 283 245 106 21 chrX 78333590 78333684 -98640456 - MIR SINE MIR -37 225 124 1984 179 54 81 chrX 78334116 78334674 -98639466 + MLT2B3 LTR ERVL 1 543 -11 31 26 0 0 chrX 78335031 78335069 -98639071 + AT_rich Low_complexity Low_complexity 1 38 0 1630 179 13 13 chrX 78335128 78335440 -98638700 + AluJo SINE Alu 1 312 0 315 0 0 0 chrX 78335644 78335679 -98638461 + (CA)n Simple_repeat Simple_repeat 2 36 0 329 313 66 28 chrX 78335681 78335892 -98638248 + L1ME4a LINE L1 5698 5916 -205 237 108 31 31 chrX 78336396 78336461 -98637679 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 1610 159 11 11 chrX 78336463 78336734 -98637406 - AluSx SINE Alu -41 271 1 3945 112 72 35 chrX 78336814 78337476 -98636664 - LTR12 LTR ERV1 -1 687 1 881 186 48 52 chrX 78337544 78337796 -98636344 - pTR5 LTR ERV1 -1445 993 743 248 288 0 15 chrX 78337841 78337907 -98636233 + MIR SINE MIR 33 97 -165 23 0 0 0 chrX 78337943 78337966 -98636174 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chrX 78338020 78338045 -98636095 + (CAT)n Simple_repeat Simple_repeat 2 26 0 1027 299 31 5 chrX 78338102 78338526 -98635614 + L1M4 LINE L1 3264 3698 -2448 1510 97 0 0 chrX 78338654 78338870 -98635270 - L1PA14 LINE L1 -4 6157 5942 2534 126 13 35 chrX 78338870 78338894 -98635246 + L1PA16 LINE L1 5462 5485 -681 2292 98 7 0 chrX 78338894 78339199 -98634941 + AluSp SINE Alu 1 307 -6 2534 126 13 35 chrX 78339199 78339628 -98634512 + L1PA16 LINE L1 5485 5905 -261 635 124 10 0 chrX 78339629 78339726 -98634414 - AluY SINE Alu -119 192 95 3690 220 22 14 chrX 78339766 78340840 -98633300 - L1P4 LINE L1 -689 5476 4398 1092 267 48 23 chrX 78340851 78341292 -98632848 + MLT1H LTR MaLR 75 549 0 243 266 63 25 chrX 78342825 78342904 -98631236 + L2 LINE L2 3231 3312 -1 304 292 87 39 chrX 78342910 78343216 -98630924 + L1M4 LINE L1 5361 5683 -483 362 250 144 8 chrX 78343394 78343526 -98630614 - Zaphod DNA AcHobo -28 4003 3854 1018 284 44 19 chrX 78343588 78343905 -98630235 - L1MCc LINE L1 -5207 1216 892 2550 58 0 7 chrX 78343943 78344253 -98629887 + AluY SINE Alu 1 308 -3 935 171 7 0 chrX 78345052 78345204 -98628936 + AluSq SINE Alu 1 153 -160 399 119 0 15 chrX 78345204 78345271 -98628869 + AluS SINE Alu 224 289 -11 24 32 0 0 chrX 78345904 78345935 -98628205 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chrX 78346473 78346497 -98627643 + (CA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chrX 78346585 78346610 -98627530 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 78347078 78347102 -98627038 + AT_rich Low_complexity Low_complexity 1 24 0 4096 216 53 27 chrX 78347128 78348332 -98625808 + L1MC2 LINE L1 4600 5863 -481 2399 68 13 0 chrX 78348332 78348641 -98625499 + AluSp SINE Alu 1 313 0 4096 216 53 27 chrX 78348641 78349134 -98625006 + L1MC2 LINE L1 5863 6342 -2 199 139 28 0 chrX 78351808 78351844 -98622296 + L2 LINE L2 3272 3308 -5 307 298 33 8 chrX 78352488 78352609 -98621531 - L2 LINE L2 -215 3057 2934 38 39 0 0 chrX 78353320 78353372 -98620768 + AT_rich Low_complexity Low_complexity 1 52 0 193 392 65 30 chrX 78353483 78353715 -98620425 + L2 LINE L2 2493 2732 -582 15116 155 28 44 chrX 78353783 78360616 -98613524 + L1PB1 LINE L1 127 6862 -5 1904 229 51 70 chrX 78361219 78361847 -98612293 - MLT1E2 LTR MaLR 0 626 11 681 100 0 0 chrX 78361980 78362080 -98612060 + L1MA1 LINE L1 6203 6302 0 330 26 0 0 chrX 78362393 78362432 -98611708 + (CA)n Simple_repeat Simple_repeat 1 39 0 208 206 65 122 chrX 78362432 78362530 -98611610 + MIR3 SINE MIR 100 193 -15 783 292 68 14 chrX 78362823 78363104 -98611036 + L2 LINE L2 2996 3291 -22 199 295 26 39 chrX 78364321 78364399 -98609741 - L3b LINE CR1 -73 1510 1434 28 48 0 0 chrX 78364694 78364736 -98609404 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 78364915 78364943 -98609197 + AT_rich Low_complexity Low_complexity 1 28 0 1108 257 16 26 chrX 78366888 78367195 -98606945 - MLT1E2 LTR MaLR -4 622 319 836 189 13 6 chrX 78367198 78367357 -98606783 - MLT1E2 LTR MaLR -466 160 1 1829 148 0 38 chrX 78367675 78367993 -98606147 + AluJo SINE Alu 1 306 -6 21 36 0 0 chrX 78368056 78368084 -98606056 + AT_rich Low_complexity Low_complexity 1 28 0 2676 199 42 0 chrX 78368107 78368629 -98605511 + L1PB1 LINE L1 132 675 -6188 * 5857 175 8 2 chrX 78368627 78370473 -98603667 + L1PB1 LINE L1 5012 6867 0 303 245 19 38 chrX 78371339 78371445 -98602695 + L1MCa LINE L1 1961 2064 -4362 185 265 20 0 chrX 78371955 78372004 -98602136 + L2 LINE L2 3217 3266 -6 232 284 78 78 chrX 78372025 78372127 -98602013 - L3 LINE CR1 -147 1430 1329 1005 331 46 36 chrX 78372281 78372601 -98601539 + L1ME LINE L1 314 642 -5730 2020 79 86 0 chrX 78372601 78372879 -98601261 + AluSq SINE Alu 1 302 -11 1005 331 46 36 chrX 78372879 78373032 -98601108 + L1ME LINE L1 642 792 -5580 313 314 114 0 chrX 78373037 78373177 -98600963 + L1ME LINE L1 838 993 -5379 575 249 75 124 chrX 78373201 78373723 -98600417 + L1ME LINE L1 1124 1712 -4670 408 308 21 7 chrX 78373741 78373884 -98600256 + L1ME LINE L1 1821 1965 -4598 1488 183 11 15 chrX 78373899 78374173 -98599967 + AluJb SINE Alu 1 273 -39 1848 119 0 0 chrX 78374173 78374433 -98599707 + MER4D LTR ERV1 611 870 -2 23 0 0 0 chrX 78375704 78375727 -98598413 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 78376129 78376157 -98597983 + AT_rich Low_complexity Low_complexity 1 28 0 274 390 43 0 chrX 78377111 78377252 -98596888 - L2 LINE L2 -2107 1207 1061 241 235 0 0 chrX 78377302 78377355 -98596785 - L1MC/D LINE L1 -399 5769 5720 * 411 280 8 8 chrX 78377354 78377479 -98596661 + L1ME1 LINE L1 6021 6145 -21 21 0 0 0 chrX 78378926 78378947 -98595193 + AT_rich Low_complexity Low_complexity 1 21 0 234 0 0 0 chrX 78379575 78379601 -98594539 + (T)n Simple_repeat Simple_repeat 1 26 0 240 86 0 0 chrX 78380227 78380262 -98593878 + (CA)n Simple_repeat Simple_repeat 2 36 0 360 0 0 0 chrX 78381714 78381754 -98592386 + (TG)n Simple_repeat Simple_repeat 1 40 0 12432 62 10 0 chrX 78382103 78384104 -98590036 - L1P2 LINE L1 -413 5741 3725 1676 309 30 10 chrX 78384419 78384927 -98589213 - LTR33 LTR ERVL -1 520 3 913 333 46 27 chrX 78385112 78385758 -98588382 - ERVL LTR ERVL -321 5333 4681 1471 343 70 29 chrX 78385792 78386740 -98587400 - ERVL LTR ERVL -1133 4631 3645 180 0 0 0 chrX 78387510 78387530 -98586610 + (A)n Simple_repeat Simple_repeat 1 20 0 250 191 12 36 chrX 78388996 78389080 -98585060 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 1668 309 30 18 chrX 78389413 78389853 -98584287 + MLT1H1 LTR MaLR 7 456 -99 1495 247 58 36 chrX 78389853 78390384 -98583756 + MER67A LTR ERV1 1 543 0 1668 309 30 18 chrX 78390384 78390486 -98583654 + MLT1H1 LTR MaLR 456 555 0 437 357 45 20 chrX 78390671 78390915 -98583225 + MIR SINE MIR 1 250 -12 337 263 178 42 chrX 78391232 78391414 -98582726 + MLT1J LTR MaLR 238 526 -89 29 78 0 0 chrX 78391704 78391768 -98582372 + AT_rich Low_complexity Low_complexity 1 64 0 3117 182 28 45 chrX 78392594 78393297 -98580843 + LTR8 LTR ERV1 1 691 0 962 326 22 62 chrX 78393503 78394006 -98580134 + L1MB1 LINE L1 3 485 -5406 5198 229 41 20 chrX 78394102 78394813 -98579327 + L1MB1 LINE L1 3321 4015 -1955 2040 104 4 4 chrX 78394813 78395111 -98579029 - AluSc SINE Alu 0 298 1 5198 229 41 20 chrX 78395111 78395829 -98578311 + L1MB1 LINE L1 4015 4782 -1188 3680 184 35 9 chrX 78396301 78397050 -98577090 + L1MB1 LINE L1 5225 5992 0 24 53 0 0 chrX 78397205 78397243 -98576897 + AT_rich Low_complexity Low_complexity 1 38 0 495 252 7 13 chrX 78397784 78397935 -98576205 - L1PBa LINE L1 -6671 192 43 634 239 89 72 chrX 78398261 78398704 -98575436 + L1MC4 LINE L1 7357 7912 -130 1486 217 0 11 chrX 78399756 78400054 -98574086 + AluJo SINE Alu 13 307 0 30 27 0 0 chrX 78400586 78400623 -98573517 + AT_rich Low_complexity Low_complexity 1 37 0 454 301 57 20 chrX 78401315 78401561 -98572579 + MIR SINE MIR 5 259 -3 27 0 0 0 chrX 78401881 78401908 -98572232 + AT_rich Low_complexity Low_complexity 1 27 0 267 161 0 0 chrX 78402001 78402057 -98572083 + (TA)n Simple_repeat Simple_repeat 1 56 0 273 317 10 48 chrX 78402094 78402198 -98571942 - MER5A DNA MER1_type 0 189 90 231 133 0 0 chrX 78402450 78402495 -98571645 + (CA)n Simple_repeat Simple_repeat 1 45 0 534 354 113 44 chrX 78402525 78403028 -98571112 + L2 LINE L2 268 805 -2509 411 325 102 35 chrX 78403095 78403409 -98570731 + L2 LINE L2 1168 1502 -1812 708 346 59 41 chrX 78403435 78404024 -98570116 + L1PA16 LINE L1 788 1387 -6187 276 284 0 0 chrX 78404141 78404222 -98569918 + L1PA16 LINE L1 2103 2183 -5398 12216 245 32 22 chrX 78404489 78406043 -98568097 + L1PA16 LINE L1 2217 3754 -3850 2500 146 26 5 chrX 78406043 78406462 -98567678 - MSTA LTR MaLR 0 428 1 12216 245 32 22 chrX 78406462 78410127 -98564013 + L1PA16 LINE L1 3754 7499 -105 310 129 14 29 chrX 78410128 78410198 -98563942 + L1PA16 LINE L1 7536 7604 0 223 146 36 0 chrX 78410258 78410313 -98563827 + (TA)n Simple_repeat Simple_repeat 2 58 0 195 377 31 25 chrX 78410481 78410640 -98563500 + L2 LINE L2 1509 1668 -1646 243 0 0 0 chrX 78410677 78410704 -98563436 + (CA)n Simple_repeat Simple_repeat 2 28 0 387 296 166 21 chrX 78410958 78411242 -98562898 + L2 LINE L2 2133 2457 -857 * 557 358 97 12 chrX 78411211 78411779 -98562361 + L2 LINE L2 2636 3253 -60 457 312 81 5 chrX 78411847 78412033 -98562107 + MIR SINE MIR 49 248 -14 23 54 0 0 chrX 78412049 78412086 -98562054 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chrX 78412286 78412321 -98561819 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 78412342 78412365 -98561775 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chrX 78413067 78413095 -98561045 + AT_rich Low_complexity Low_complexity 1 28 0 362 176 47 0 chrX 78413467 78413615 -98560525 + (TA)n Simple_repeat Simple_repeat 1 155 0 7776 222 52 45 chrX 78413615 78416548 -98557592 + ERVL-B3 LTR ERVL 2813 5757 -7 1929 240 79 15 chrX 78416549 78417027 -98557113 + MLT2B3 LTR ERVL 2 517 -37 194 0 39 0 chrX 78417027 78417053 -98557087 + (TC)n Simple_repeat Simple_repeat 2 28 0 1929 240 79 15 chrX 78417053 78417094 -98557046 + MLT2B3 LTR ERVL 517 554 0 486 227 10 0 chrX 78417095 78417192 -98556948 - L1MCa LINE L1 -5922 504 407 * 7896 216 29 21 chrX 78417163 78419379 -98554761 - L1M3 LINE L1 -647 5813 3569 2281 138 58 35 chrX 78419903 78420422 -98553718 + MLT2A2 LTR ERVL 2 554 0 29 0 0 0 chrX 78420577 78420606 -98553534 + AT_rich Low_complexity Low_complexity 1 29 0 33 66 0 0 chrX 78420819 78420880 -98553260 + AT_rich Low_complexity Low_complexity 1 61 0 26 30 0 0 chrX 78421827 78421860 -98552280 + AT_rich Low_complexity Low_complexity 1 33 0 482 210 158 55 chrX 78421882 78422154 -98551986 + L1ME1 LINE L1 5859 6158 -8 22 0 0 0 chrX 78422886 78422908 -98551232 + AT_rich Low_complexity Low_complexity 1 22 0 3992 133 15 124 chrX 78423148 78424703 -98549437 + pTR5 LTR ERV1 734 2606 0 281 448 15 8 chrX 78424703 78425096 -98549044 + L1PBa LINE L1 71 466 -6397 333 314 67 43 chrX 78425151 78425361 -98548779 + L1PBa LINE L1 1429 1643 -5220 373 404 17 10 chrX 78425385 78425687 -98548453 + L1PBb LINE L1 712 1015 -5848 1216 286 51 13 chrX 78425805 78426763 -98547377 + L1PBb LINE L1 1006 1949 -4913 4661 107 44 33 chrX 78426784 78427890 -98546250 - MER11A LTR ERVK 0 1071 1 2926 275 32 21 chrX 78427914 78428658 -98545482 + L1PBb LINE L1 1977 2748 -4114 1716 253 41 5 chrX 78428658 78429069 -98545071 - MSTB LTR MaLR 0 426 1 2926 275 32 21 chrX 78429069 78429536 -98544604 + L1PBb LINE L1 2748 3208 -3654 12964 150 23 36 chrX 78429549 78432745 -98541395 - L1PA7 LINE L1 -2 6152 3019 1886 137 7 13 chrX 78432745 78433045 -98541095 - AluSx SINE Alu -9 303 6 12964 150 23 36 chrX 78433045 78433665 -98540475 - L1PA7 LINE L1 -3135 3019 2392 2797 239 38 16 chrX 78433699 78434545 -98539595 + L1 LINE L1 3198 4061 -2801 1786 149 0 21 chrX 78434545 78434834 -98539306 + AluSx SINE Alu 1 283 -29 198 0 0 0 chrX 78434853 78434875 -98539265 + (CA)n Simple_repeat Simple_repeat 2 23 0 977 134 6 0 chrX 78434878 78435050 -98539090 + (TA)n Simple_repeat Simple_repeat 1 173 0 331 208 0 99 chrX 78435080 78435181 -98538959 - L1MC4 LINE L1 -1339 6703 6613 303 241 96 0 chrX 78435210 78435293 -98538847 - L1MC4 LINE L1 -1339 6703 6613 267 105 53 0 chrX 78435294 78435351 -98538789 + (TA)n Simple_repeat Simple_repeat 2 61 0 6637 217 22 15 chrX 78435351 78436963 -98537177 + L1 LINE L1 3337 4960 -1186 3069 171 53 23 chrX 78437031 78437732 -98536408 + L1M1 LINE L1 2748 3469 -4096 414 305 92 8 chrX 78437758 78438080 -98536060 - L1ME3A LINE L1 -287 5883 5525 400 238 69 53 chrX 78438182 78438200 -98535940 - L1M3 LINE L1 -662 5509 5493 1908 184 2 58 chrX 78438200 78438613 -98535527 + MLT1B LTR MaLR 1 390 0 400 238 69 53 chrX 78438613 78438941 -98535199 - L1M3 LINE L1 -678 5493 5185 293 286 41 27 chrX 78438988 78439135 -98535005 - L1M3 LINE L1 -1094 5052 4904 470 282 98 74 chrX 78439143 78439614 -98534526 - L1M3 LINE L1 -1301 4845 4364 370 204 11 23 chrX 78439987 78440075 -98534065 - MER103 DNA DNA -74 92 6 2760 243 46 64 chrX 78441191 78442680 -98531460 + L1MDb LINE L1 468 1948 -4458 1055 134 23 18 chrX 78442680 78442851 -98531289 + AluSg/x SINE Alu 129 300 -12 23 68 0 0 chrX 78442855 78442899 -98531241 + AT_rich Low_complexity Low_complexity 1 44 0 859 260 49 6 chrX 78442957 78443303 -98530837 + L1MDb LINE L1 2109 2469 -3937 478 250 68 0 chrX 78443282 78443474 -98530666 + L1M4 LINE L1 5395 5599 -807 * 2539 228 58 8 chrX 78443464 78444123 -98530017 + L1 LINE L1 4309 5000 -1146 1712 175 3 0 chrX 78444127 78444412 -98529728 + AluJb SINE Alu 1 286 -26 198 71 0 0 chrX 78444415 78444443 -98529697 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1683 199 21 3 chrX 78444474 78444805 -98529335 - MLT1A1 LTR MaLR -28 337 1 4165 208 62 21 chrX 78444806 78445884 -98528256 + L1MC3 LINE L1 6655 7776 -9 3721 256 56 64 chrX 78445997 78447990 -98526150 + L1MDb LINE L1 2904 4881 -1525 2679 303 36 20 chrX 78448063 78448968 -98525172 + L1M4 LINE L1 2 921 -5621 6564 48 2 5 chrX 78448987 78449815 -98524325 + L1PA7 LINE L1 5327 6152 -2 1530 208 9 53 chrX 78449821 78450163 -98523977 - MLT1A1 LTR MaLR -38 327 1 1823 205 14 0 chrX 78450263 78450633 -98523507 + L1MDb LINE L1 4949 5323 -1083 654 108 11 0 chrX 78450632 78450725 -98523415 + L1M1 LINE L1 5607 5700 -602 * 4073 151 26 1 chrX 78450725 78451417 -98522723 + L1MA1 LINE L1 5586 6298 -4 2381 267 35 34 chrX 78451570 78452754 -98521386 - L1ME1 LINE L1 -15 6151 4970 1169 275 24 36 chrX 78452779 78453277 -98520863 + L1M4 LINE L1 4912 5403 -743 3106 213 57 8 chrX 78453619 78454412 -98519728 - L1MC3 LINE L1 -9 7776 6945 910 224 77 35 chrX 78454410 78454483 -98519657 - L1ME1 LINE L1 -2091 4055 3986 * 1965 219 41 5 chrX 78454483 78454894 -98519246 + MSTB LTR MaLR 1 426 0 910 224 77 35 chrX 78454894 78455160 -98518980 - L1ME1 LINE L1 -2160 3986 3702 1509 263 40 37 chrX 78455162 78455862 -98518278 - L1ME1 LINE L1 -3245 2901 2200 42332 36 22 2 chrX 78456093 78462121 -98512019 - L1PA3 LINE L1 0 6155 2 415 355 34 37 chrX 78462109 78462517 -98511623 - L1ME3 LINE L1 -274 5888 5482 * 781 153 9 13 chrX 78462537 78462764 -98511376 - L1PA16 LINE L1 -1 6165 5905 * 838 118 0 15 chrX 78462751 78462886 -98511254 + L1PA16 LINE L1 5771 5903 -263 * 1793 255 204 45 chrX 78462883 78462970 -98511170 - L1MCb LINE L1 -3956 2608 2536 2309 107 3 0 chrX 78462970 78463279 -98510861 - AluSp SINE Alu -3 310 1 1793 255 204 45 chrX 78463279 78463979 -98510161 - L1MCb LINE L1 -4028 2536 1949 1317 180 4 174 chrX 78463979 78464478 -98509662 + MLT2D LTR ERVL 1 414 0 1793 255 204 45 chrX 78464478 78465460 -98508680 - L1MCb LINE L1 -4615 1949 542 607 303 65 58 chrX 78465486 78465886 -98508254 - L1MCb LINE L1 -5641 404 2 3967 129 69 37 chrX 78465996 78466731 -98507409 + LTR1 LTR ERV1 27 785 0 36 70 0 0 chrX 78466760 78466831 -98507309 + AT_rich Low_complexity Low_complexity 1 71 0 1433 318 67 100 chrX 78467230 78467690 -98506450 + L2 LINE L2 106 580 -2734 229 62 31 0 chrX 78467690 78467722 -98506418 - THE1B LTR MaLR 0 364 332 1955 138 52 25 chrX 78467722 78468085 -98506055 - THE1C LTR MaLR -2 373 1 1433 318 67 100 chrX 78468085 78468826 -98505314 + L2 LINE L2 578 1298 -2016 11259 167 29 3 chrX 78469404 78471226 -98502914 + L1PA12 LINE L1 1 1869 -5712 219 69 0 0 chrX 78471227 78471256 -98502884 + (TG)n Simple_repeat Simple_repeat 2 30 0 246 32 0 0 chrX 78471256 78471287 -98502853 + (CA)n Simple_repeat Simple_repeat 2 32 0 351 148 148 9 chrX 78471288 78471403 -98502737 - L1MA7 LINE L1 -75 6216 6086 33 97 0 0 chrX 78471408 78471511 -98502629 + AT_rich Low_complexity Low_complexity 1 103 0 10620 233 29 32 chrX 78471542 78476813 -98497327 - L1PA16 LINE L1 -187 6682 1335 293 283 11 11 chrX 78476797 78476889 -98497251 - L1PA16 LINE L1 -5285 1564 1473 * 249 370 8 16 chrX 78477348 78477475 -98496665 - L1PA16 LINE L1 -5957 893 768 490 174 52 111 chrX 78478204 78478376 -98495764 - L1M4c LINE L1 -4361 2022 1481 818 220 0 0 chrX 78478392 78478533 -98495607 + MER66A-int LTR ERV1 6536 6676 0 1889 199 67 21 chrX 78478540 78478972 -98495168 + MER66A LTR ERV1 27 478 0 1908 242 14 2 chrX 78478972 78479389 -98494751 - MLT1C LTR MaLR -21 446 25 4853 185 2 9 chrX 78479740 78480650 -98493490 + L1PA16 LINE L1 5257 6160 -6 22 0 0 0 chrX 78480650 78480672 -98493468 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 78480690 78480714 -98493426 + AT_rich Low_complexity Low_complexity 1 24 0 6699 222 69 33 chrX 78480725 78482921 -98491219 + L1MA10 LINE L1 2172 4446 -1700 1427 153 150 3 chrX 78482928 78483222 -98490918 + MER61A LTR ERV1 7 343 0 1242 213 25 24 chrX 78483222 78483665 -98490475 + LTR12-int LTR ERV1 1 498 -4719 338 156 39 39 chrX 78483735 78483812 -98490328 + LTR12-int LTR ERV1 631 707 -4510 24894 97 34 21 chrX 78483839 78485007 -98489133 + LTR12-int LTR ERV1 1320 2472 -2745 5288 86 6 0 chrX 78485007 78485691 -98488449 + LTR12 LTR ERV1 1 688 0 24894 97 34 21 chrX 78485691 78488316 -98485824 + LTR12-int LTR ERV1 2472 5206 -11 3389 217 20 45 chrX 78488316 78488327 -98485813 + L1MA10 LINE L1 4433 4443 -1720 1920 142 58 18 chrX 78488327 78488657 -98485483 + MER61A LTR ERV1 1 343 0 3389 217 20 45 chrX 78488657 78489655 -98484485 + L1MA10 LINE L1 4443 5418 -745 1482 222 89 40 chrX 78489671 78490121 -98484019 - MER50 LTR ERV1 -22 712 241 408 240 202 0 chrX 78490185 78490314 -98483826 - MER50 LTR ERV1 -566 168 14 4375 175 18 44 chrX 78490318 78491282 -98482858 + L1MA10 LINE L1 5396 6334 0 191 167 24 0 chrX 78491743 78491785 -98482355 + GA-rich Low_complexity Low_complexity 2 44 0 248 283 74 30 chrX 78492960 78493094 -98481046 - LTR33A LTR ERVL -88 433 294 845 261 71 47 chrX 78493581 78493945 -98480195 - MER39 LTR ERV1 0 707 335 258 236 18 0 chrX 78493940 78493995 -98480145 - MER39 LTR ERV1 -651 56 1 * 1100 320 27 19 chrX 78494156 78494569 -98479571 - LTR16A LTR ERVL -5 445 30 552 354 32 59 chrX 78494670 78495111 -98479029 - L2 LINE L2 0 3272 2844 253 282 70 0 chrX 78495325 78495396 -98478744 - L2 LINE L2 -10 3303 3228 488 348 105 20 chrX 78495400 78495751 -98478389 - L2 LINE L2 -639 2675 2295 26 82 0 0 chrX 78496230 78496291 -98477849 + AT_rich Low_complexity Low_complexity 1 61 0 259 208 208 9 chrX 78496499 78496605 -98477535 - MIR SINE MIR -14 248 122 393 315 27 0 chrX 78496715 78496826 -98477314 + LTR16C LTR ERVL 64 177 -314 44 56 0 0 chrX 78497102 78497174 -98476966 + AT_rich Low_complexity Low_complexity 1 72 0 1643 271 54 34 chrX 78499116 78499913 -98474227 + L1ME3A LINE L1 5176 5990 -180 243 143 0 0 chrX 78499926 78499961 -98474179 - MER61E LTR ERV1 -4 565 531 959 192 4 73 chrX 78499962 78500117 -98474023 - L1 LINE L1 -2103 5462 5329 2375 95 0 0 chrX 78500117 78500422 -98473718 - AluSg SINE Alu -5 305 1 959 192 4 73 chrX 78500422 78500511 -98473629 - L1 LINE L1 -2236 5329 5235 9620 208 17 16 chrX 78500513 78501099 -98473041 - L1 LINE L1 -5634 1931 1347 189 0 0 0 chrX 78501099 78501120 -98473020 + (CCA)n Simple_repeat Simple_repeat 1 21 0 9620 208 17 16 chrX 78501120 78501802 -98472338 - L1 LINE L1 -6218 1347 658 2180 125 3 0 chrX 78501802 78502105 -98472035 - AluSq SINE Alu -9 304 1 9620 208 17 16 chrX 78502105 78502748 -98471392 - L1 LINE L1 -6907 658 17 644 288 31 31 chrX 78502919 78503145 -98470995 - L1M4 LINE L1 -6293 249 24 971 251 43 16 chrX 78503173 78503680 -98470460 + L1MC3 LINE L1 2749 3269 -2877 3778 202 12 10 chrX 78503803 78503843 -98470297 + L1PA16 LINE L1 4410 4448 -1718 186 71 0 0 chrX 78503843 78503871 -98470269 + (CA)n Simple_repeat Simple_repeat 1 28 0 3778 202 12 10 chrX 78503871 78504953 -98469187 + L1PA16 LINE L1 4448 5535 -631 482 137 13 3 chrX 78504953 78505056 -98469084 - MLT2B3 LTR ERVL 0 453 386 1803 29 0 0 chrX 78505057 78505266 -98468874 - L1P LINE L1 -1901 4245 4037 8515 52 10 0 chrX 78505276 78507128 -98467012 + L1PA5 LINE L1 4291 6154 0 1912 206 28 65 chrX 78507128 78507659 -98466481 - MLT2B3 LTR ERVL -55 499 1 3036 150 85 5 chrX 78507660 78508246 -98465894 + L1PA16 LINE L1 5532 6164 -2 2402 233 52 38 chrX 78508314 78508583 -98465557 + L1MC3 LINE L1 4390 4654 -1621 1937 157 0 0 chrX 78508583 78508883 -98465257 - AluSx SINE Alu -12 300 1 2402 233 52 38 chrX 78508883 78509723 -98464417 + L1MC3 LINE L1 4654 5508 -767 1354 174 39 88 chrX 78509723 78510107 -98464033 + MLT1A1 LTR MaLR 1 365 0 2402 233 52 38 chrX 78510107 78510128 -98464012 + L1MC3 LINE L1 5508 5527 -748 6654 57 0 7 chrX 78510134 78510973 -98463167 - L1PA6 LINE L1 -1 6153 5321 3292 223 22 17 chrX 78510974 78511802 -98462338 + L1MC3 LINE L1 5521 6352 -1433 343 115 0 0 chrX 78511825 78511877 -98462263 - MSTA LTR MaLR 0 428 377 396 103 0 0 chrX 78511879 78511937 -98462203 + (TG)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chrX 78511937 78511958 -98462182 + AT_rich Low_complexity Low_complexity 1 21 0 324 217 0 54 chrX 78511962 78512054 -98462086 + L1MC4 LINE L1 6614 6700 -1342 1945 152 53 6 chrX 78512054 78512396 -98461744 - MSTA LTR MaLR -67 361 4 8773 184 22 7 chrX 78512399 78514026 -98460114 - MSTA-int LTR MaLR 0 1651 1 2234 153 48 10 chrX 78514026 78514438 -98459702 - MSTA LTR MaLR 0 428 1 4139 219 45 20 chrX 78514438 78515475 -98458665 + L1MC3 LINE L1 6371 7433 -352 2407 182 22 53 chrX 78515507 78516013 -98458127 - MLT2B1 LTR ERVL -10 510 21 1379 253 121 13 chrX 78516016 78516412 -98457728 - MER31B LTR ERV1 -21 445 7 2403 51 0 10 chrX 78516413 78516708 -98457432 + AluY SINE Alu 1 292 -19 1110 184 138 30 chrX 78516719 78517023 -98457117 + L1MC3 LINE L1 7428 7764 -21 1450 171 48 0 chrX 78517849 78518100 -98456040 + Tigger3(Golem) DNA MER2_type 2775 3037 0 22 0 0 0 chrX 78518640 78518662 -98455478 + AT_rich Low_complexity Low_complexity 1 22 0 1473 188 193 0 chrX 78519279 78519641 -98454499 - MER66A LTR ERV1 -45 433 2 245 300 55 27 chrX 78519823 78519933 -98454207 + L2 LINE L2 3179 3291 -22 2175 92 34 0 chrX 78519934 78520226 -98453914 + AluY SINE Alu 1 302 -9 456 331 160 27 chrX 78520537 78521030 -98453110 - L2 LINE L2 -13 3300 2737 564 305 83 62 chrX 78521699 78522037 -98452103 - L2 LINE L2 -586 2728 2384 326 315 16 8 chrX 78522052 78522179 -98451961 + MER91B DNA MER1_type 2 129 -61 527 366 4 9 chrX 78522268 78522500 -98451640 - L2 LINE L2 -924 2390 2160 372 357 55 11 chrX 78522550 78522732 -98451408 - L3 LINE CR1 -9 1568 1379 190 375 93 32 chrX 78523696 78523912 -98450228 + L2 LINE L2 2444 2672 -642 366 169 0 0 chrX 78523913 78523972 -98450168 + Tigger1 DNA MER2_type 1 59 -2359 4910 188 64 6 chrX 78523993 78526016 -98448124 - L1MA4A LINE L1 -15 7350 5211 28 0 0 0 chrX 78526034 78526062 -98448078 + AT_rich Low_complexity Low_complexity 1 28 0 1914 169 12 0 chrX 78526066 78526392 -98447748 - L1PB3 LINE L1 0 6154 5825 233 147 0 0 chrX 78526918 78526952 -98447188 - L1MA4A LINE L1 -6178 1031 998 1827 294 27 13 chrX 78526958 78527578 -98446562 - L1MA4A LINE L1 -6580 629 1 8122 173 24 19 chrX 78527600 78528718 -98445422 + Tigger1 DNA MER2_type 45 1175 -1243 2821 7 0 0 chrX 78528718 78529023 -98445117 + AluYa5 SINE Alu 1 305 -6 8122 173 24 19 chrX 78529023 78529410 -98444730 + Tigger1 DNA MER2_type 1175 1558 -860 6754 144 77 35 chrX 78579410 78580676 -98393464 - HERV3 LTR ERV1 -7107 1319 2 2675 148 93 22 chrX 78580676 78581232 -98392908 - LTR4 LTR ERV1 0 596 1 2072 192 60 6 chrX 78581568 78582529 -98391611 - L1MB2 LINE L1 -8 6163 5121 1753 164 7 14 chrX 78582529 78582821 -98391319 + AluSp SINE Alu 2 291 -22 591 259 112 0 chrX 78582823 78583109 -98391031 - L1MB2 LINE L1 -1724 4422 4105 502 145 13 0 chrX 78583129 78583205 -98390935 + AluS SINE Alu 6 82 -230 943 174 26 10 chrX 78583276 78583586 -98390554 - MER65A LTR ERV1 0 445 166 1991 173 70 2 chrX 78583604 78584003 -98390137 + MSTA LTR MaLR 1 426 -2 548 160 109 51 chrX 78584118 78584274 -98389866 - MER65B LTR ERV1 -365 166 2 3867 129 25 134 chrX 78584727 78586275 -98387865 + pTR5 LTR ERV1 743 2606 0 359 218 0 0 chrX 78586414 78586501 -98387639 - L1MB2 LINE L1 -34 6137 6051 2619 207 52 3 chrX 78586502 78587136 -98387004 - L1MA7 LINE L1 -12 6279 5615 3368 195 58 82 chrX 78587149 78587610 -98386530 + L1 LINE L1 3020 3491 -2655 493 191 0 0 chrX 78587610 78587694 -98386446 + AluJb SINE Alu 212 295 -17 3368 195 58 82 chrX 78587694 78588393 -98385747 + L1 LINE L1 3491 4233 -1913 399 188 134 0 chrX 78588948 78589060 -98385080 + L1 LINE L1 4734 4860 -1286 928 147 179 62 chrX 78589104 78589328 -98384812 + AluJb SINE Alu 9 258 -54 229 311 0 0 chrX 78589541 78589615 -98384525 + (CATA)n Simple_repeat Simple_repeat 3 76 0 2177 133 0 3 chrX 78590148 78590456 -98383684 - AluSx SINE Alu -5 307 1 260 171 26 118 chrX 78590550 78590626 -98383514 - MER5A DNA MER1_type 0 189 121 251 306 22 30 chrX 78590689 78590823 -98383317 + L1M4c LINE L1 217 349 -6008 582 208 26 3 chrX 78590850 78591023 -98383117 + L1M4c LINE L1 1539 1721 -4707 645 186 108 44 chrX 78591083 78591378 -98382762 + L1M4c LINE L1 2136 2449 -3979 1727 184 21 0 chrX 78591401 78591689 -98382451 + AluSx SINE Alu 7 300 -12 195 129 0 0 chrX 78591704 78591735 -98382405 + (A)n Simple_repeat Simple_repeat 1 31 0 2827 242 70 68 chrX 78591813 78592008 -98382132 + L1M4c LINE L1 2523 2716 -3710 9150 176 44 15 chrX 78592008 78593818 -98380322 + L1PA13 LINE L1 3479 5234 -929 2419 89 0 3 chrX 78593818 78594120 -98380020 + AluY SINE Alu 1 301 -10 9150 176 44 15 chrX 78594120 78594621 -98379519 + L1PA13 LINE L1 5234 5856 -307 2288 121 0 0 chrX 78594621 78594928 -98379212 + AluSg SINE Alu 1 307 -3 9150 176 44 15 chrX 78594928 78595242 -98378898 + L1PA13 LINE L1 5856 6159 -4 2827 242 70 68 chrX 78595242 78595690 -98378450 + L1M4c LINE L1 2716 3162 -3264 491 258 0 23 chrX 78595690 78595818 -98378322 + FLAM_A SINE Alu 1 125 -8 2827 242 70 68 chrX 78595818 78596087 -98378053 + L1M4c LINE L1 3162 3429 -2997 2063 101 6 70 chrX 78596087 78596403 -98377737 + AluY SINE Alu 1 296 -15 2827 242 70 68 chrX 78596403 78596614 -98377526 + L1M4c LINE L1 3429 3638 -2788 1928 141 17 7 chrX 78596614 78596905 -98377235 + AluSx SINE Alu 1 294 -18 2827 242 70 68 chrX 78596905 78597067 -98377073 + L1M4c LINE L1 3638 3798 -2628 1624 202 14 3 chrX 78597067 78597418 -98376722 + L1PA16 LINE L1 5798 6152 -14 2827 242 70 68 chrX 78597418 78597535 -98376605 + L1M4c LINE L1 3798 3913 -2513 1330 230 42 11 chrX 78597535 78597818 -98376322 + AluJo SINE Alu 1 292 -20 2827 242 70 68 chrX 78597818 78597941 -98376199 + L1M4c LINE L1 3913 4034 -2392 1954 137 3 45 chrX 78597941 78598255 -98375885 + AluSx SINE Alu 1 301 -11 2032 136 3 16 chrX 78598265 78598574 -98375566 + AluSq SINE Alu 1 305 -8 2827 242 70 68 chrX 78598574 78598780 -98375360 + L1M4c LINE L1 4042 4246 -2180 1673 177 0 24 chrX 78598780 78599095 -98375045 - AluSx SINE Alu 0 310 3 2026 136 3 0 chrX 78599100 78599395 -98374745 - AluSx SINE Alu -16 296 1 2827 242 70 68 chrX 78599395 78599484 -98374656 + L1M4c LINE L1 4249 4372 -2054 671 180 225 4 chrX 78599481 78599725 -98374415 + L1MB2 LINE L1 5870 6167 -4 * 413 254 27 18 chrX 78599728 78599838 -98374302 - MER5A DNA MER1_type -55 134 24 30 0 0 0 chrX 78599933 78599963 -98374177 + AT_rich Low_complexity Low_complexity 1 30 0 389 221 58 0 chrX 78600213 78600317 -98373823 + L1MB5 LINE L1 6054 6163 -11 1607 185 6 32 chrX 78600534 78600848 -98373292 + AluJo SINE Alu 6 311 -1 21 0 0 0 chrX 78601187 78601208 -98372932 + AT_rich Low_complexity Low_complexity 1 21 0 2142 126 10 10 chrX 78605857 78606167 -98367973 - AluSx SINE Alu -2 310 1 2493 79 0 16 chrX 78606456 78606772 -98367368 - AluY SINE Alu 0 311 1 21 0 0 0 chrX 78607005 78607026 -98367114 + AT_rich Low_complexity Low_complexity 1 21 0 2298 90 0 17 chrX 78607258 78607558 -98366582 + AluSc SINE Alu 1 295 -14 2926 73 0 3 chrX 78607607 78607988 -98366152 + L1PA8 LINE L1 5779 6158 -14 1558 207 0 23 chrX 78608700 78609000 -98365140 - AluJo SINE Alu -19 293 1 1893 134 10 10 chrX 78609183 78609465 -98364675 + AluSx SINE Alu 1 285 -27 210 37 0 0 chrX 78609465 78609492 -98364648 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1577 190 56 0 chrX 78610320 78610604 -98363536 + AluSx SINE Alu 1 300 -12 533 273 29 14 chrX 78610720 78610859 -98363281 - MIR SINE MIR -71 191 51 1725 164 41 7 chrX 78611589 78611881 -98362259 - AluSx SINE Alu -10 302 1 21 0 0 0 chrX 78611951 78611972 -98362168 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 78611993 78612014 -98362126 + AT_rich Low_complexity Low_complexity 1 21 0 241 330 86 25 chrX 78612441 78612638 -98361502 - L2 LINE L2 -575 2739 2531 806 310 268 28 chrX 78613821 78614608 -98359532 + L2 LINE L2 1016 1991 -1323 238 282 58 39 chrX 78614822 78614925 -98359215 + L2 LINE L2 3207 3311 -2 2257 86 3 13 chrX 78615057 78615358 -98358782 + AluY SINE Alu 3 300 -11 556 276 94 12 chrX 78615413 78615743 -98358397 - HAL1b LINE L1 -567 781 425 2162 125 0 0 chrX 78615805 78616101 -98358039 + AluSx SINE Alu 3 298 -14 1737 196 103 50 chrX 78616217 78616759 -98357381 - L1MB7 LINE L1 -57 6127 5557 460 147 0 0 chrX 78616764 78616839 -98357301 + AluS SINE Alu 221 295 -15 222 37 0 0 chrX 78616876 78616903 -98357237 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 2779 247 82 39 chrX 78616904 78618217 -98355923 - L1M4c LINE L1 -4877 1769 381 1739 153 0 51 chrX 78618217 78618530 -98355610 + AluSx SINE Alu 5 301 -11 2779 247 82 39 chrX 78618530 78618594 -98355546 - L1M4c LINE L1 -6265 381 321 1342 217 38 0 chrX 78618641 78618904 -98355236 - AluJo SINE Alu -25 287 15 446 277 146 20 chrX 78618913 78619166 -98354974 - L1M4c LINE L1 -6249 293 9 21 0 0 0 chrX 78620762 78620783 -98353357 + AT_rich Low_complexity Low_complexity 1 21 0 243 254 0 0 chrX 78622800 78622871 -98351269 + A-rich Low_complexity Low_complexity 1 71 0 191 294 0 0 chrX 78623495 78623546 -98350594 - MIR SINE MIR -77 131 81 241 115 19 19 chrX 78623717 78623769 -98350371 + HY3 scRNA scRNA 37 88 -13 219 139 0 0 chrX 78623781 78623817 -98350323 + (A)n Simple_repeat Simple_repeat 1 36 0 399 245 53 60 chrX 78624207 78624358 -98349782 + MIR SINE MIR 72 221 -41 247 246 0 0 chrX 78624601 78624658 -98349482 - AluJ/FLAM SINE Alu -210 92 36 813 289 113 57 chrX 78625387 78625952 -98348188 + MLT1E2 LTR MaLR 21 617 -9 363 137 27 14 chrX 78625960 78626033 -98348107 + MLT1E2-int LTR MaLR 1 74 -1297 455 242 83 83 chrX 78626143 78626203 -98347937 + MLT1E2-int LTR MaLR 113 172 -1199 1750 181 17 10 chrX 78626203 78626501 -98347639 + AluJo SINE Alu 1 300 -12 455 242 83 83 chrX 78626501 78626742 -98347398 + MLT1E2-int LTR MaLR 171 414 -957 466 265 62 14 chrX 78626752 78626963 -98347177 + MLT1E2-int LTR MaLR 370 590 -781 180 77 0 0 chrX 78626964 78626990 -98347150 + (TGGGGG)n Simple_repeat Simple_repeat 1 26 0 2522 126 25 25 chrX 78627024 78627461 -98346679 + MER1A DNA MER1_type 93 529 0 318 190 25 38 chrX 78627579 78627737 -98346403 + GA-rich Low_complexity Low_complexity 3 158 0 631 291 101 55 chrX 78627829 78628266 -98345874 + MLT1E2-int LTR MaLR 692 1148 -223 1285 265 74 51 chrX 78628460 78628921 -98345219 + MLT1E2 LTR MaLR 2 483 -143 1226 228 10 54 chrX 78628921 78629266 -98344874 - AluJo SINE Alu 0 332 1 1285 265 74 51 chrX 78629266 78629414 -98344726 + MLT1E2 LTR MaLR 483 626 0 489 216 24 24 chrX 78629959 78630084 -98344056 - FLAM_A SINE Alu -6 136 12 1377 187 41 31 chrX 78630314 78630608 -98343532 - AluJo SINE Alu -4 298 2 965 190 0 6 chrX 78630805 78630968 -98343172 - AluJo SINE Alu -30 282 121 23 33 0 0 chrX 78631257 78631287 -98342853 + AT_rich Low_complexity Low_complexity 1 30 0 2203 91 3 36 chrX 78631439 78631747 -98342393 + AluY SINE Alu 1 298 -13 1445 190 10 24 chrX 78633317 78633612 -98340528 + AluJb SINE Alu 1 291 -21 271 182 0 0 chrX 78633616 78633660 -98340480 + AluSp SINE Alu 130 173 -130 216 238 0 0 chrX 78633750 78633792 -98340348 + (TG)n Simple_repeat Simple_repeat 1 42 0 1453 200 3 53 chrX 78633794 78634114 -98340026 - AluJb SINE Alu -7 305 2 1651 199 17 0 chrX 78634232 78634528 -98339612 + AluJb SINE Alu 1 301 -11 1048 223 68 0 chrX 78634531 78634751 -98339389 + AluJo SINE Alu 1 235 -77 301 235 104 17 chrX 78634996 78635111 -98339029 - L1M4 LINE L1 -1541 4605 4481 270 309 108 0 chrX 78635291 78635430 -98338710 - MIR SINE MIR -26 236 83 1914 102 6 70 chrX 78636635 78636950 -98337190 - AluSq SINE Alu -18 295 1 22 0 0 0 chrX 78636951 78636973 -98337167 + AT_rich Low_complexity Low_complexity 1 22 0 849 138 0 15 chrX 78637415 78637545 -98336595 + FLAM_C SINE Alu 1 128 -5 22 35 0 0 chrX 78637602 78637631 -98336509 + AT_rich Low_complexity Low_complexity 1 29 0 1403 168 45 62 chrX 78637889 78638180 -98335960 + AluSx SINE Alu 1 286 -26 207 0 0 0 chrX 78638180 78638203 -98335937 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 2156 117 10 0 chrX 78638619 78638926 -98335214 + AluSx SINE Alu 1 310 -2 418 278 121 64 chrX 78639170 78639451 -98334689 + L1M4 LINE L1 3810 4106 -2040 639 269 67 34 chrX 78639589 78639887 -98334253 - HsTC2 DNA Tc2 -142 1756 1273 1745 145 30 46 chrX 78640073 78640376 -98333764 + AluSg SINE Alu 1 298 -12 318 252 0 3 chrX 78640448 78640607 -98333533 - HsTC2 DNA Tc2 -1690 208 2 477 181 21 9 chrX 78640765 78640934 -98333206 + L1P5 LINE L1 5516 5781 -375 1607 157 3 78 chrX 78640937 78641268 -98332872 + AluJb SINE Alu 1 306 -6 278 121 0 17 chrX 78641276 78641334 -98332806 + Alu SINE Alu 246 302 0 21 0 0 0 chrX 78641364 78641385 -98332755 + AT_rich Low_complexity Low_complexity 1 21 0 1184 215 0 69 chrX 78641408 78641696 -98332444 + AluJo SINE Alu 1 268 -44 261 0 0 0 chrX 78641700 78641729 -98332411 + (CA)n Simple_repeat Simple_repeat 2 30 0 241 248 179 30 chrX 78641762 78641861 -98332279 + L1ME LINE L1 5390 5473 -648 1764 188 0 10 chrX 78641861 78642165 -98331975 + AluSx SINE Alu 1 301 -11 241 248 179 30 chrX 78642165 78642367 -98331773 + L1ME LINE L1 5473 5736 -385 498 198 48 21 chrX 78642451 78642638 -98331502 - Charlie1b DNA MER1_type -6 517 326 715 249 56 9 chrX 78642671 78642904 -98331236 - Charlie1b DNA MER1_type -268 255 12 181 214 0 0 chrX 78643923 78643951 -98330189 - L2 LINE L2 -21 3251 3224 294 50 0 0 chrX 78644633 78644673 -98329467 + (TA)n Simple_repeat Simple_repeat 1 40 0 1916 144 10 0 chrX 78644779 78645070 -98329070 + AluSx SINE Alu 1 294 -18 2269 53 0 69 chrX 78645349 78645667 -98328473 + AluY SINE Alu 1 296 -15 1624 107 110 52 chrX 78646143 78646434 -98327706 - AluSq SINE Alu -5 308 1 312 275 84 0 chrX 78649337 78649479 -98324661 + AluJb SINE Alu 116 269 -33 797 224 145 28 chrX 78649723 78649978 -98324162 + AluJo SINE Alu 11 295 -17 454 254 48 8 chrX 78650120 78650246 -98323894 - FRAM SINE Alu -24 152 22 1387 188 122 14 chrX 78651188 78651540 -98322600 - MLT1B LTR MaLR 0 390 1 231 143 18 36 chrX 78651541 78651597 -98322543 - MLT1B-int LTR MaLR -1 1734 1680 231 248 108 23 chrX 78651606 78651735 -98322405 + L1MC4 LINE L1 6931 7070 -972 541 188 91 108 chrX 78651890 78652014 -98322126 - Charlie1b DNA MER1_type -2572 189 67 2252 99 0 19 chrX 78652014 78652328 -98321812 - AluY SINE Alu -3 308 1 541 188 91 108 chrX 78652328 78652389 -98321751 - Charlie1b DNA MER1_type -2694 67 7 630 226 8 0 chrX 78652585 78652709 -98321431 + FLAM_C SINE Alu 1 125 -8 1325 176 138 4 chrX 78652725 78652986 -98321154 + AluSp SINE Alu 7 302 -11 1993 125 45 0 chrX 78653016 78653305 -98320835 + AluSg SINE Alu 4 305 -5 1589 186 7 30 chrX 78654286 78654609 -98319531 + AluJb SINE Alu 1 316 0 871 237 51 60 chrX 78654860 78655295 -98318845 + L1MC5 LINE L1 7161 7591 -370 275 198 44 11 chrX 78655323 78655414 -98318726 + (TA)n Simple_repeat Simple_repeat 2 95 0 320 211 44 114 chrX 78655453 78655680 -98318460 + L1MC5 LINE L1 7657 7867 -94 1943 137 0 0 chrX 78655870 78656141 -98317999 + AluSx SINE Alu 40 310 -2 2533 121 0 16 chrX 78656414 78656793 -98317347 - THE1C LTR MaLR -2 373 1 2159 182 7 10 chrX 78656801 78657218 -98316922 - LOR1a LTR ERV1 0 497 82 1304 158 3 28 chrX 78657230 78657533 -98316607 - MER4A LTR ERV1 -50 614 261 785 149 8 0 chrX 78657627 78657761 -98316379 - LOR1-int LTR ERV1 -2056 6064 5930 452 64 73 82 chrX 78657768 78657794 -98316346 - LOR1-int LTR ERV1 -3777 4343 4318 1517 217 20 7 chrX 78657794 78658093 -98316047 + AluJb SINE Alu 1 303 -9 452 64 73 82 chrX 78658093 78658176 -98315964 - LOR1-int LTR ERV1 -3802 4318 4235 694 217 30 18 chrX 78658177 78658343 -98315797 + THE1C LTR MaLR 1 168 -207 429 130 26 13 chrX 78658343 78658420 -98315720 - THE1B LTR MaLR 0 364 287 15692 91 6 7 chrX 78658539 78661105 -98313035 - L1PA7 LINE L1 -3 6151 3583 1990 118 31 10 chrX 78661105 78661393 -98312747 + AluSc SINE Alu 1 294 -15 15692 91 6 7 chrX 78661393 78661876 -98312264 - L1PA7 LINE L1 -2571 3583 3101 10423 122 9 0 chrX 78661876 78663560 -98310580 + L1P LINE L1 1269 2968 -3178 1356 126 59 20 chrX 78663561 78663815 -98310325 - LOR1-int LTR ERV1 -3941 4179 3916 631 161 0 8 chrX 78663815 78663945 -98310195 + L1 LINE L1 4647 4775 -1371 795 180 0 31 chrX 78663946 78664107 -98310033 - MER61A LTR ERV1 0 343 188 1195 177 0 51 chrX 78664129 78664182 -98309958 - LOR1-int LTR ERV1 -4217 3903 3849 7544 28 0 11 chrX 78664182 78665842 -98308298 + L1PA3 LINE L1 4488 6137 -18 486 0 0 0 chrX 78665785 78665843 -98308297 + L1PA3 LINE L1 6081 6171 0 * 277 30 0 0 chrX 78665843 78665876 -98308264 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1195 177 0 51 chrX 78665876 78666074 -98308066 - LOR1-int LTR ERV1 -4270 3850 3663 3603 220 13 29 chrX 78666080 78666713 -98307427 + L1 LINE L1 4142 4751 -1395 1039 181 206 34 chrX 78666713 78667005 -98307135 - MER61A LTR ERV1 0 343 2 3603 220 13 29 chrX 78667005 78667494 -98306646 + L1 LINE L1 4751 5246 -900 698 193 0 7 chrX 78667497 78667647 -98306493 - LOR1a LTR ERV1 -348 149 1 180 97 0 0 chrX 78667946 78667977 -98306163 + (T)n Simple_repeat Simple_repeat 1 31 0 2233 97 0 3 chrX 78668037 78668336 -98305804 - AluY SINE Alu -13 298 1 5190 212 95 49 chrX 78668336 78670275 -98303865 - L1 LINE L1 -1978 4350 2323 408 194 28 0 chrX 78670299 78670371 -98303769 + AluJ/FRAM SINE Alu 216 289 -23 3469 234 82 19 chrX 78670386 78671034 -98303106 - L1 LINE L1 -4018 2310 1704 252 0 0 0 chrX 78671034 78671062 -98303078 + (TG)n Simple_repeat Simple_repeat 2 29 0 3469 234 82 19 chrX 78671062 78672222 -98301918 - L1 LINE L1 -4624 1704 383 455 178 0 0 chrX 78672225 78672315 -98301825 - L1 LINE L1 -5166 162 73 695 203 86 16 chrX 78672364 78672551 -98301589 - LTR54 LTR ERV1 -310 200 1 631 248 66 9 chrX 78672556 78672875 -98301265 + L1M4 LINE L1 2898 3234 -2912 4786 119 53 12 chrX 78672903 78673652 -98300488 + LTR17 LTR ERV1 1 780 0 284 323 16 16 chrX 78673998 78674122 -98300018 - MER21A LTR ERV1 -258 673 550 181 57 57 0 chrX 78675188 78675223 -98298917 + A-rich Low_complexity Low_complexity 1 37 0 1632 206 0 13 chrX 78675233 78675534 -98298606 + AluJo SINE Alu 11 307 -5 1240 197 32 29 chrX 78676147 78676274 -98297866 + AluJo SINE Alu 12 137 -175 2132 135 3 3 chrX 78676274 78676570 -98297570 + AluSq SINE Alu 6 301 -12 1240 197 32 29 chrX 78676570 78676721 -98297419 + AluJo SINE Alu 137 291 -21 206 174 0 43 chrX 78676722 78676733 -98297407 + GA-rich Low_complexity Low_complexity 5 15 -33 2447 93 0 0 chrX 78676733 78677043 -98297097 + AluY SINE Alu 1 310 -1 206 174 0 43 chrX 78677043 78677077 -98297063 + GA-rich Low_complexity Low_complexity 15 48 0 6482 198 49 120 chrX 78677465 78677823 -98296317 - L1PB1 LINE L1 -1 6866 6484 1697 163 33 23 chrX 78677823 78678124 -98296016 - AluSx SINE Alu -8 304 1 6482 198 49 120 chrX 78678124 78679157 -98294983 - L1PB1 LINE L1 -383 6484 5379 2465 85 0 0 chrX 78679157 78679462 -98294678 - AluY SINE Alu -5 306 2 6482 198 49 120 chrX 78679462 78680364 -98293776 - L1PB1 LINE L1 -1488 5379 4415 518 264 19 28 chrX 78680364 78680576 -98293564 - LTR4 LTR ERV1 -2 594 385 6482 198 49 120 chrX 78680576 78680854 -98293286 - L1PB1 LINE L1 -2452 4415 4119 238 226 52 87 chrX 78680854 78680969 -98293171 - LTR4 LTR ERV1 -479 117 7 6482 198 49 120 chrX 78680969 78682438 -98291702 - L1PB1 LINE L1 -2748 4119 2917 2145 104 7 19 chrX 78682438 78682745 -98291395 - AluSg SINE Alu -7 303 1 6482 198 49 120 chrX 78682745 78683597 -98290543 - L1PB1 LINE L1 -3950 2917 2006 970 266 34 20 chrX 78683625 78683979 -98290161 - L1PB1 LINE L1 -6498 365 7 771 208 169 0 chrX 78683992 78684199 -98289941 + AluSg SINE Alu 62 303 -7 512 268 7 7 chrX 78684199 78684337 -98289803 - AluSq/x SINE Alu -174 138 1 2159 124 0 0 chrX 78684715 78685006 -98289134 + AluSx SINE Alu 1 291 -21 180 0 0 0 chrX 78685012 78685032 -98289108 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chrX 78686820 78686848 -98287292 + AT_rich Low_complexity Low_complexity 1 28 0 2129 227 62 82 chrX 78687819 78687901 -98286239 + L1MB2 LINE L1 777 859 -5525 2275 67 16 22 chrX 78687901 78688213 -98285927 - AluY SINE Alu -1 310 1 2129 227 62 82 chrX 78688213 78688860 -98285280 + L1MB2 LINE L1 859 1517 -4867 623 217 16 0 chrX 78688860 78688989 -98285151 + FLAM_A SINE Alu 2 132 -1 2129 227 62 82 chrX 78688989 78689468 -98284672 + L1MB2 LINE L1 1517 1866 -4518 2101 85 44 10 chrX 78689468 78689761 -98284379 - AluY SINE Alu -8 303 1 2129 227 62 82 chrX 78689761 78689792 -98284348 + L1MB2 LINE L1 1866 1896 -4488 457 310 21 7 chrX 78689911 78690053 -98284087 + FRAM SINE Alu 1 144 -32 209 191 22 45 chrX 78690080 78690169 -98283971 + A-rich Low_complexity Low_complexity 2 88 0 1579 256 66 26 chrX 78690171 78690335 -98283805 + L1MB2 LINE L1 2151 2307 -4075 762 246 62 9 chrX 78690335 78690559 -98283581 + MER46A DNA MER2_type 1 236 0 1579 256 66 26 chrX 78690559 78691422 -98282718 + L1MB2 LINE L1 2307 3210 -3172 1017 206 14 5 chrX 78691443 78691666 -98282474 + L1MB2 LINE L1 5839 6063 -344 857 137 0 0 chrX 78691667 78691791 -98282349 - AluSg/x SINE Alu -12 300 177 541 194 62 0 chrX 78691795 78691924 -98282216 + L1MB2 LINE L1 6052 6188 -219 598 98 11 0 chrX 78691924 78692016 -98282124 + AluSg/x SINE Alu 211 303 -9 2363 44 7 7 chrX 78692027 78692321 -98281819 - AluY SINE Alu -17 294 1 1975 136 0 14 chrX 78692386 78692700 -98281440 - AluSg SINE Alu 0 310 1 769 148 9 0 chrX 78692815 78692930 -98281210 - FLAM_C SINE Alu -17 116 1 314 208 24 24 chrX 78693050 78693175 -98280965 + CT-rich Low_complexity Low_complexity 3 127 0 1616 175 26 0 chrX 78693175 78693444 -98280696 - AluJb SINE Alu 0 312 37 1770 185 3 0 chrX 78693454 78693741 -98280399 - AluJb SINE Alu -24 288 1 2053 122 3 0 chrX 78693750 78694036 -98280104 - AluSg1 SINE Alu -22 287 1 22 0 0 0 chrX 78694160 78694182 -98279958 + AT_rich Low_complexity Low_complexity 1 22 0 1164 247 36 23 chrX 78694283 78694591 -98279549 + AluJo SINE Alu 1 312 0 452 208 14 14 chrX 78694591 78694735 -98279405 + GA-rich Low_complexity Low_complexity 2 145 0 2105 161 25 39 chrX 78694929 78695365 -98278775 + MER83 LTR ERV1 6 435 -13 4228 218 74 6 chrX 78695375 78696320 -98277820 + MER83-int LTR ERV1 9 1017 -3268 1400 172 8 0 chrX 78696332 78696570 -98277570 + LTR3 LTR ERVK 22 261 -171 911 173 6 6 chrX 78696606 78696779 -98277361 + LTR3 LTR ERVK 257 429 -3 12558 119 22 10 chrX 78696785 78698800 -98275340 + HERVK3 LTR ERVK 38 2076 -5167 2237 102 0 13 chrX 78698800 78699104 -98275036 - AluY SINE Alu -11 300 1 628 247 59 0 chrX 78699109 78699304 -98274836 - L1ME1 LINE L1 -5 6161 5964 2138 136 0 0 chrX 78699304 78699598 -98274542 - AluSg SINE Alu -12 298 5 1300 136 15 5 chrX 78699609 78699807 -98274333 - AluSc SINE Alu -7 302 103 2319 64 17 10 chrX 78701189 78701487 -98272653 - AluY SINE Alu -11 300 1 1137 224 79 34 chrX 78702628 78703007 -98271133 - MSTD LTR MaLR 0 396 1 1665 183 37 0 chrX 78703495 78703795 -98270345 - AluSx SINE Alu -1 311 1 510 98 0 0 chrX 78704199 78704281 -98269859 + (TA)n Simple_repeat Simple_repeat 2 83 0 2011 154 13 0 chrX 78705105 78705411 -98268729 - AluSx SINE Alu -2 310 1 2362 85 0 0 chrX 78705864 78706159 -98267981 - AluY SINE Alu -16 295 1 1856 136 3 89 chrX 78706159 78706497 -98267643 - AluSx SINE Alu -3 309 1 7944 63 19 0 chrX 78706552 78707540 -98266600 - LTR13 LTR ERVK 0 1007 1 1408 286 75 21 chrX 78707635 78708605 -98265535 + L1MDa LINE L1 35 1298 -5242 535 203 149 47 chrX 78708622 78708943 -98265197 + L1MDa LINE L1 2150 2503 -4037 583 234 37 21 chrX 78709451 78709639 -98264501 + PABL_B LTR ERV1 475 665 -2 923 256 104 63 chrX 78709648 78710643 -98263497 + L1MDa LINE L1 2524 3581 -2959 1950 148 3 16 chrX 78710643 78710947 -98263193 + AluSx SINE Alu 1 300 -12 923 256 104 63 chrX 78710947 78711189 -98262951 + L1MDa LINE L1 3581 3812 -2728 1476 199 10 42 chrX 78711192 78711336 -98262804 + AluJo SINE Alu 2 149 -163 3492 121 2 4 chrX 78711336 78711848 -98262292 + MER9 LTR ERVK 1 511 0 1476 199 10 42 chrX 78711848 78712009 -98262131 + AluJo SINE Alu 149 297 -15 226 267 116 27 chrX 78712329 78712475 -98261665 - L1ME1 LINE L1 -203 5959 5801 586 232 65 38 chrX 78712728 78712913 -98261227 + Charlie1a DNA MER1_type 41 230 -1225 2267 120 3 0 chrX 78712990 78713298 -98260842 + AluY SINE Alu 3 311 0 440 237 237 6 chrX 78713332 78713505 -98260635 + MLT1C LTR MaLR 198 410 -57 1869 143 0 4 chrX 78713506 78713778 -98260362 - AluSg SINE Alu -21 289 19 320 229 0 0 chrX 78715198 78715259 -98258881 + AluS SINE Alu 2 62 -246 7672 193 18 14 chrX 78915259 78915380 -98058760 + L1M1 LINE L1 3544 3663 -2618 216 0 0 0 chrX 78915380 78915404 -98058736 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 7672 193 18 14 chrX 78915404 78917269 -98056871 + L1M1 LINE L1 3663 5538 -743 1161 229 41 25 chrX 78917277 78917591 -98056549 + L1MD1 LINE L1 5772 6090 -152 291 93 0 0 chrX 78917595 78917638 -98056502 + (TG)n Simple_repeat Simple_repeat 2 44 0 459 258 125 22 chrX 78917684 78918053 -98056087 + L1MC/D LINE L1 2234 2640 -3506 280 314 21 0 chrX 78918059 78918199 -98055941 + (TA)n Simple_repeat Simple_repeat 2 144 0 326 230 0 7 chrX 78918225 78918364 -98055776 + (TA)n Simple_repeat Simple_repeat 2 139 0 7170 228 31 29 chrX 78918387 78920943 -98053197 + L1MA9 LINE L1 3393 5940 -372 257 103 0 0 chrX 78921040 78921079 -98053061 + L1PA8 LINE L1 6128 6166 -6 10180 174 23 65 chrX 78921163 78923234 -98050906 - L1PA15-16 LINE L1 -4862 1987 5 454 311 34 77 chrX 78923626 78924066 -98050074 - L1M4 LINE L1 -2162 3984 3564 2202 263 17 10 chrX 78924087 78924797 -98049343 + L1MC/D LINE L1 3032 3746 -2400 31 44 0 0 chrX 78925005 78925050 -98049090 + AT_rich Low_complexity Low_complexity 1 45 0 1286 223 50 14 chrX 78925179 78925457 -98048683 - AluJo SINE Alu -24 288 1 273 314 55 55 chrX 78925556 78926178 -98047962 + L1MC/D LINE L1 4076 4697 -1449 320 204 49 21 chrX 78926204 78926346 -98047794 + (TA)n Simple_repeat Simple_repeat 1 146 0 633 327 65 20 chrX 78926361 78926609 -98047531 + LTR33 LTR ERVL 26 284 -237 1782 324 62 15 chrX 78926990 78927768 -98046372 + ERVL LTR ERVL 3418 4231 -1533 291 325 38 46 chrX 78927913 78928153 -98045987 + L1MC/D LINE L1 5552 5789 -2019 21 0 0 0 chrX 78928162 78928183 -98045957 + AT_rich Low_complexity Low_complexity 1 21 0 1802 207 56 25 chrX 78928800 78929244 -98044896 - LOR1b LTR ERV1 -3 458 1 325 256 33 11 chrX 78929321 78929411 -98044729 - MER5A DNA MER1_type -2 187 96 739 207 55 12 chrX 78929806 78929970 -98044170 - MER5B DNA MER1_type -6 172 2 256 355 57 28 chrX 78931032 78931173 -98042967 - L2 LINE L2 -1 3312 3168 * 1342 295 83 6 chrX 78931172 78931643 -98042497 - L2 LINE L2 -1028 2286 1780 1809 113 0 0 chrX 78932162 78932410 -98041730 + AluSc SINE Alu 39 286 -23 1625 196 35 11 chrX 78932729 78933076 -98041064 + MLT1A1 LTR MaLR 1 355 -10 2145 106 3 7 chrX 78933172 78933473 -98040667 + AluSg SINE Alu 1 300 -10 215 289 0 0 chrX 78933473 78933525 -98040615 + MIR SINE MIR 24 75 -187 32 43 0 0 chrX 78933694 78933740 -98040400 + AT_rich Low_complexity Low_complexity 1 46 0 1056 176 66 96 chrX 78934042 78934314 -98039826 + LOR1b LTR ERV1 1 258 -203 2233 86 3 13 chrX 78934314 78934617 -98039523 - AluY SINE Alu 0 311 12 543 241 103 0 chrX 78934901 78935046 -98039094 + MLT1A1 LTR MaLR 465 624 0 21 57 0 0 chrX 78935088 78935123 -98039017 + AT_rich Low_complexity Low_complexity 1 35 0 198 103 0 0 chrX 78935348 78935377 -98038763 + (A)n Simple_repeat Simple_repeat 1 29 0 246 231 0 0 chrX 78937102 78937154 -98036986 + LTR30 LTR ERV1 1 52 -670 564 191 9 17 chrX 78937154 78937269 -98036871 + LTR12 LTR ERV1 53 166 -548 834 117 13 180 chrX 78937269 78937508 -98036632 + LTR12 LTR ERV1 76 274 -440 320 283 10 0 chrX 78937511 78937610 -98036530 + LTR30 LTR ERV1 544 643 -79 718 98 0 0 chrX 78937611 78937713 -98036427 + LTR12 LTR ERV1 481 582 -132 224 255 10 29 chrX 78937970 78938072 -98036068 + (TATG)n Simple_repeat Simple_repeat 4 103 0 2102 116 0 26 chrX 78938374 78938685 -98035455 - AluSg SINE Alu -7 303 1 4899 209 42 11 chrX 78938689 78939762 -98034378 - L1MC3 LINE L1 -110 7675 6570 207 0 0 0 chrX 78939782 78939805 -98034335 + (TG)n Simple_repeat Simple_repeat 2 24 0 1232 256 43 28 chrX 78939806 78940158 -98033982 + MSTD LTR MaLR 40 396 0 2728 217 58 52 chrX 78940158 78941132 -98033008 - L1M4c LINE L1 -4517 2048 1039 249 228 18 0 chrX 78941126 78941183 -98032957 - L1M4c LINE L1 -5833 709 652 * 365 343 93 42 chrX 78941529 78941765 -98032375 - L1M4c LINE L1 -6293 249 2 192 179 0 0 chrX 78942124 78942163 -98031977 + (TTA)n Simple_repeat Simple_repeat 1 39 0 22 56 0 0 chrX 78942200 78942236 -98031904 + AT_rich Low_complexity Low_complexity 1 36 0 260 231 0 0 chrX 78942794 78942846 -98031294 + LTR30 LTR ERV1 1 52 -670 660 218 8 77 chrX 78942846 78943080 -98031060 + LTR12 LTR ERV1 53 270 -444 378 214 42 0 chrX 78943080 78943186 -98030954 + LTR30 LTR ERV1 544 643 -79 671 119 0 0 chrX 78943187 78943288 -98030852 + LTR12 LTR ERV1 481 581 -133 29 70 0 0 chrX 78943408 78943465 -98030675 + AT_rich Low_complexity Low_complexity 1 57 0 375 248 134 13 chrX 78943888 78944037 -98030103 + MER58C DNA MER1_type 48 214 -1 395 278 187 16 chrX 78944649 78944836 -98029304 + MIR SINE MIR 39 257 -5 943 238 32 69 chrX 78945032 78945309 -98028831 + MLT2B1 LTR ERVL 1 267 -253 16532 190 31 20 chrX 78945313 78948521 -98025619 + ERVL-B1 LTR ERVL 2510 5753 -11 1404 245 88 25 chrX 78948528 78948979 -98025161 + MLT2B1 LTR ERVL 4 387 -27 26 30 0 0 chrX 78949621 78949654 -98024486 + AT_rich Low_complexity Low_complexity 1 33 0 360 299 104 55 chrX 78950191 78950392 -98023748 + MIR SINE MIR 49 259 -3 1620 142 76 44 chrX 78950687 78951031 -98023109 + THE1C LTR MaLR 1 355 -20 2399 77 0 6 chrX 78951079 78951391 -98022749 - AluY SINE Alu -1 310 1 413 273 167 15 chrX 78951393 78951925 -98022215 + L1M4 LINE L1 4633 5245 -901 508 57 57 0 chrX 78951945 78952015 -98022125 + MADE1 DNA Mariner 6 79 -1 1097 291 149 19 chrX 78952163 78952592 -98021548 + L2 LINE L2 2621 3152 -161 1494 224 7 47 chrX 78952592 78952998 -98021142 - MLT1B LTR MaLR 0 390 1 1097 291 149 19 chrX 78952998 78953183 -98020957 + L2 LINE L2 3152 3312 -1 369 302 157 38 chrX 78953297 78953456 -98020684 - MER5A DNA MER1_type -1 188 11 24 67 0 0 chrX 78954125 78954170 -98019970 + AT_rich Low_complexity Low_complexity 1 45 0 2224 194 48 69 chrX 78954838 78955488 -98018652 - MER92B LTR ERV1 0 636 1 218 352 78 35 chrX 78955494 78955636 -98018504 - MIR3 SINE MIR -28 180 33 455 204 19 83 chrX 78955657 78955814 -98018326 - MER69 DNA AcHobo -9 2517 2371 4941 174 15 12 chrX 78955814 78956342 -98017798 + L1PA16 LINE L1 5199 5730 -436 5856 57 30 22 chrX 78956342 78957116 -98017024 + LTR17 LTR ERV1 1 780 0 4941 174 15 12 chrX 78957116 78957547 -98016593 + L1PA16 LINE L1 5730 6158 -8 1383 202 120 16 chrX 78957596 78958095 -98016045 - MER69 DNA AcHobo -268 2258 1708 430 210 30 20 chrX 78958106 78958206 -98015934 - MER69 DNA AcHobo -1625 901 801 756 302 36 5 chrX 78958212 78958434 -98015706 - MER69 DNA AcHobo -694 532 304 195 114 0 0 chrX 78959258 78959293 -98014847 + (T)n Simple_repeat Simple_repeat 1 35 0 13717 160 26 40 chrX 78959397 78960230 -98013910 + L1PA13 LINE L1 2341 3185 -2978 1740 188 3 0 chrX 78960230 78960538 -98013602 + AluSx SINE Alu 1 309 -3 13717 160 26 40 chrX 78960538 78960558 -98013582 + L1PA13 LINE L1 3185 3204 -2959 1878 170 0 0 chrX 78960558 78960869 -98013271 + AluSx SINE Alu 1 311 -1 13717 160 26 40 chrX 78960869 78962146 -98011994 + L1PA13 LINE L1 3204 4498 -1665 2337 93 0 6 chrX 78962146 78962459 -98011681 + AluSx SINE Alu 1 311 -1 13717 160 26 40 chrX 78962459 78962540 -98011600 + L1PA13 LINE L1 4498 4579 -1584 2439 47 13 0 chrX 78962540 78962839 -98011301 + AluY SINE Alu 6 308 -3 13717 160 26 40 chrX 78962839 78964306 -98009834 + L1PA13 LINE L1 4579 5958 -205 2097 121 0 0 chrX 78964306 78964595 -98009545 + AluSg SINE Alu 1 289 -21 13717 160 26 40 chrX 78964595 78964799 -98009341 + L1PA13 LINE L1 5958 6163 0 1645 241 91 49 chrX 78964955 78965524 -98008616 - MLT1E LTR MaLR 0 593 1 22 56 0 0 chrX 78965825 78965861 -98008279 + AT_rich Low_complexity Low_complexity 1 36 0 40 21 0 0 chrX 78967232 78967279 -98006861 + AT_rich Low_complexity Low_complexity 1 47 0 1326 208 84 4 chrX 78967279 78967553 -98006587 - AluJb SINE Alu -16 296 1 2239 87 0 0 chrX 78967602 78967890 -98006250 + AluY SINE Alu 1 288 -23 21 57 0 0 chrX 78970200 78970235 -98003905 + AT_rich Low_complexity Low_complexity 1 35 0 354 314 130 18 chrX 78971006 78971344 -98002796 + L1ME4a LINE L1 5732 6107 -14 327 25 0 0 chrX 78971766 78971806 -98002334 + (TG)n Simple_repeat Simple_repeat 1 40 0 3397 217 73 18 chrX 78972814 78973539 -98000601 + L1MB7 LINE L1 5028 5837 -347 1801 195 40 0 chrX 78973539 78973888 -98000252 - MLT1A1 LTR MaLR -2 363 1 3397 217 73 18 chrX 78973888 78974248 -97999892 + L1MB7 LINE L1 5837 6176 -8 27 0 0 0 chrX 78975064 78975091 -97999049 + AT_rich Low_complexity Low_complexity 1 27 0 422 263 89 73 chrX 78975399 78975545 -97998595 - L2 LINE L2 0 3313 3160 198 0 0 0 chrX 78975545 78975567 -97998573 + (TA)n Simple_repeat Simple_repeat 1 22 0 422 263 89 73 chrX 78975567 78975679 -97998461 - L2 LINE L2 -153 3160 3051 2838 294 130 39 chrX 78975738 78977287 -97996853 - L2 LINE L2 -453 2861 1171 591 211 37 0 chrX 78977472 78977581 -97996559 + FLAM_A SINE Alu 3 115 -18 338 206 1 97 chrX 78977766 78977884 -97996256 - L1M4 LINE L1 -540 5581 5476 306 293 101 74 chrX 78977913 78978210 -97995930 - L1M4 LINE L1 -1103 5043 4739 468 206 123 78 chrX 78978220 78978424 -97995716 + L2 LINE L2 3101 3313 0 614 263 102 68 chrX 78978468 78979157 -97994983 - L1M4 LINE L1 -1438 4708 3997 29 0 0 0 chrX 78979265 78979294 -97994846 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chrX 78979523 78979552 -97994588 + AT_rich Low_complexity Low_complexity 1 29 0 2071 102 0 17 chrX 78979590 78979940 -97994200 - AluY SINE Alu 0 311 1 247 276 0 0 chrX 78980188 78980246 -97993894 + (CATA)n Simple_repeat Simple_repeat 3 60 0 192 40 0 0 chrX 78980247 78980272 -97993868 + (GA)n Simple_repeat Simple_repeat 2 26 0 1158 180 0 39 chrX 78980283 78980516 -97993624 - Tigger5 DNA MER2_type -15 2308 2085 1253 212 56 32 chrX 78980631 78980970 -97993170 - MER7A DNA MER2_type -1 345 1 252 0 0 0 chrX 78980985 78981013 -97993127 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 261 0 0 0 chrX 78981012 78981041 -97993099 + (CA)n Simple_repeat Simple_repeat 2 30 0 1345 200 56 87 chrX 78981162 78981596 -97992544 + MER66A LTR ERV1 97 478 0 10108 192 48 30 chrX 78981596 78983718 -97990422 + MER66A-int LTR ERV1 1 2160 -4516 13064 146 36 0 chrX 78983740 78984199 -97989941 + L1PA10 LINE L1 3044 3485 -2683 180 0 0 0 chrX 78984199 78984219 -97989921 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 13064 146 36 0 chrX 78984219 78986833 -97987307 + L1PA10 LINE L1 3485 6165 -3 7203 188 111 96 chrX 78986863 78989395 -97984745 + MER66A-int LTR ERV1 2348 4918 -1758 324 172 16 0 chrX 78989397 78989461 -97984679 + MER66A-int LTR ERV1 4877 4941 -1735 * 1487 183 51 0 chrX 78989450 78989723 -97984417 + MER66A-int LTR ERV1 6390 6676 0 621 225 94 9 chrX 78989791 78990001 -97984139 + MER66A LTR ERV1 97 420 -215 412 296 57 53 chrX 78990030 78990331 -97983809 - L1M4 LINE L1 -2161 3985 3684 600 377 88 26 chrX 78990429 78991257 -97982883 + L2 LINE L2 2180 3059 -213 180 329 13 13 chrX 78991710 78991786 -97982354 - MIR SINE MIR 0 262 187 4301 228 53 24 chrX 78992895 78993792 -97980348 - L1MB3 LINE L1 0 6183 5314 1098 245 39 19 chrX 78993792 78994155 -97979985 + MLT1A2 LTR MaLR 1 370 -4 4301 228 53 24 chrX 78994155 78995123 -97979017 - L1MB3 LINE L1 -869 5314 4376 234 0 0 0 chrX 78995123 78995149 -97978991 + (TG)n Simple_repeat Simple_repeat 2 27 0 4301 228 53 24 chrX 78995149 78995317 -97978823 - L1MB3 LINE L1 -1807 4376 4214 1786 235 2 12 chrX 78995317 78995717 -97978423 + MSTD LTR MaLR 1 396 0 4301 228 53 24 chrX 78995717 78995935 -97978205 - L1MB3 LINE L1 -1969 4214 3876 10005 174 16 25 chrX 78995961 78998936 -97975204 - L1PA13 LINE L1 -6 7595 4648 3646 208 15 17 chrX 78998924 79000061 -97974079 - L1PA13 LINE L1 -4024 3560 2405 * 8530 215 15 2 chrX 79000064 79001620 -97972520 - L1PA13 LINE L1 -5996 1585 9 1370 238 17 30 chrX 79001630 79001937 -97972203 - L1MB3 LINE L1 -2298 3848 3539 1747 149 78 94 chrX 79001937 79002127 -97972013 + MSTA LTR MaLR 1 193 -235 2090 111 50 3 chrX 79002127 79002424 -97971716 + AluY SINE Alu 1 311 0 1747 149 78 94 chrX 79002424 79002668 -97971472 + MSTA LTR MaLR 193 428 0 8035 162 33 42 chrX 79002670 79003181 -97970959 + MSTA-int LTR MaLR 3 517 -1063 234 0 0 0 chrX 79003181 79003207 -97970933 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 8035 162 33 42 chrX 79003207 79004288 -97969852 + MSTA-int LTR MaLR 517 1580 0 2029 154 88 15 chrX 79004290 79004687 -97969453 + MSTA LTR MaLR 3 428 0 1370 238 17 30 chrX 79004687 79004836 -97969304 - L1MB3 LINE L1 -2609 3537 3392 1916 165 3 0 chrX 79005206 79005515 -97968625 - AluSx SINE Alu -2 310 1 1428 275 129 11 chrX 79005947 79006507 -97967633 + MLT1E2 LTR MaLR 1 626 0 23 54 0 0 chrX 79006719 79006756 -97967384 + AT_rich Low_complexity Low_complexity 1 37 0 31 0 0 0 chrX 79006906 79006937 -97967203 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 79007406 79007427 -97966713 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chrX 79007670 79007700 -97966440 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 79008194 79008219 -97965921 + AT_rich Low_complexity Low_complexity 1 25 0 2446 65 0 3 chrX 79008389 79008696 -97965444 - AluY SINE Alu -5 306 1 2441 140 58 22 chrX 79009007 79009456 -97964684 + MER4C LTR ERV1 1 465 0 232 388 15 8 chrX 79009691 79009825 -97964315 + MIR SINE MIR 81 215 -47 22 70 0 0 chrX 79009888 79009931 -97964209 + AT_rich Low_complexity Low_complexity 1 43 0 3084 140 40 37 chrX 79010541 79010912 -97963228 - MER4B LTR ERV1 -36 574 199 2778 19 0 0 chrX 79010912 79011227 -97962913 - AluYb8 SINE Alu -3 315 1 3084 140 40 37 chrX 79011227 79011425 -97962715 - MER4B LTR ERV1 -411 199 3 26 0 0 0 chrX 79011520 79011546 -97962594 + AT_rich Low_complexity Low_complexity 1 26 0 1307 270 57 75 chrX 79011980 79012702 -97961438 - L1ME3A LINE L1 0 6170 5462 1691 295 62 46 chrX 79012706 79014430 -97959710 + L1ME LINE L1 2409 4159 -1987 957 289 71 19 chrX 79014572 79015212 -97958928 + L1ME LINE L1 4961 5643 -519 1389 279 65 17 chrX 79015377 79015857 -97958283 + LTR40a LTR ERVL 1 503 -16 1731 163 171 8 chrX 79015857 79016225 -97957915 + MSTA LTR MaLR 1 428 0 8584 162 9 39 chrX 79016228 79017855 -97956285 + MSTA-int LTR MaLR 3 1580 0 1637 176 165 8 chrX 79017855 79018225 -97955915 + MSTA LTR MaLR 1 428 0 205 388 72 26 chrX 79018382 79018771 -97955369 + L2 LINE L2 2266 2672 -642 25 0 0 0 chrX 79019007 79019032 -97955108 + AT_rich Low_complexity Low_complexity 1 25 0 1525 245 25 50 chrX 79019407 79019922 -97954218 - MLT1D LTR MaLR 0 505 4 203 227 45 0 chrX 79020013 79020057 -97954083 + polypyrimidine Low_complexity Low_complexity 2 47 0 184 264 75 0 chrX 79020311 79020364 -97953776 - MIR SINE MIR -121 141 85 524 276 92 85 chrX 79020429 79020712 -97953428 - L2 LINE L2 0 3313 3029 310 301 163 44 chrX 79021296 79021933 -97952207 - HAL1 LINE L1 -3 2504 1792 895 173 100 2 chrX 79021960 79022106 -97952034 + MLT2A2 LTR ERVL 287 417 -36 207 0 0 0 chrX 79022106 79022129 -97952011 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 333 0 0 0 chrX 79022128 79022165 -97951975 + (TA)n Simple_repeat Simple_repeat 1 37 0 895 173 100 2 chrX 79022129 79022205 -97951935 + MLT2A2 LTR ERVL 417 453 0 3253 152 48 2 chrX 79022205 79022746 -97951394 + MER4B LTR ERV1 45 610 0 7567 165 40 50 chrX 79022834 79024385 -97949755 + MER4B-int LTR ERV1 180 1744 -5014 2158 121 0 3 chrX 79024385 79024691 -97949449 + AluSg SINE Alu 1 305 -5 7567 165 40 50 chrX 79024691 79025212 -97948928 + MER4B-int LTR ERV1 1744 2268 -4490 2308 100 0 0 chrX 79025212 79025513 -97948627 + AluSg SINE Alu 1 301 -9 7567 165 40 50 chrX 79025513 79025593 -97948547 + MER4B-int LTR ERV1 2268 2347 -4411 2210 106 0 0 chrX 79025593 79025885 -97948255 - AluY SINE Alu -19 292 1 7567 165 40 50 chrX 79025885 79026803 -97947337 + MER4B-int LTR ERV1 2347 3327 -3431 626 137 0 0 chrX 79026810 79026905 -97947235 + MER4B-int LTR ERV1 3452 3546 -3212 1072 168 8 2 chrX 79026916 79027153 -97946987 + MER4B-int LTR ERV1 4041 4326 -2432 * 1654 130 16 0 chrX 79027148 79027395 -97946745 + MER50-int LTR ERV1 6947 7197 -8 3753 194 7 31 chrX 79027395 79028141 -97945999 + MER50 LTR ERV1 1 728 -6 7032 154 28 62 chrX 79028141 79029649 -97944491 + MER4B-int LTR ERV1 5122 6577 -181 1617 157 15 15 chrX 79029641 79029909 -97944231 + MER4B-int LTR ERV1 6491 6758 0 * 3437 154 41 0 chrX 79029909 79030495 -97943645 + MER4B LTR ERV1 1 610 0 697 294 108 24 chrX 79030632 79031177 -97942963 - HAL1 LINE L1 -1258 1249 659 22 0 0 0 chrX 79032405 79032427 -97941713 + AT_rich Low_complexity Low_complexity 1 22 0 301 369 42 23 chrX 79033053 79033267 -97940873 + MIR SINE MIR 34 251 -11 260 234 39 109 chrX 79033563 79033820 -97940320 + L1ME LINE L1 812 1050 -5155 1191 294 79 36 chrX 79034076 79035089 -97939051 + L1ME LINE L1 1385 2470 -3745 2113 128 0 0 chrX 79035089 79035387 -97938753 + AluY SINE Alu 1 298 -13 1191 294 79 36 chrX 79035387 79036009 -97938131 + L1ME LINE L1 2470 3064 -3151 25 0 0 0 chrX 79036198 79036223 -97937917 + AT_rich Low_complexity Low_complexity 1 25 0 897 133 7 7 chrX 79036258 79036409 -97937731 + L1M1 LINE L1 2678 2828 -4737 1668 162 3 29 chrX 79036409 79036768 -97937372 - MER4A LTR ERV1 0 664 257 480 177 21 10 chrX 79036765 79036861 -97937279 - MER4A LTR ERV1 -567 97 1 * 1131 144 11 5 chrX 79036872 79037060 -97937080 - MER4A-int LTR ERV1 -5 6593 6405 2188 113 7 0 chrX 79038623 79038924 -97935216 + AluSq SINE Alu 6 308 -5 14945 116 52 10 chrX 79039197 79041689 -97932451 - MER4A-int LTR ERV1 -166 6432 3837 3053 121 79 24 chrX 79041692 79042399 -97931741 - MER4A-int LTR ERV1 -2921 3677 2840 542 183 122 0 chrX 79042399 79042514 -97931626 + LTR8 LTR ERV1 129 257 -434 4171 103 48 13 chrX 79042514 79043224 -97930916 - MER4A-int LTR ERV1 -4103 2495 1761 405 70 0 0 chrX 79043235 79043292 -97930848 + (CA)n Simple_repeat Simple_repeat 2 58 0 1366 85 34 64 chrX 79043292 79043632 -97930508 - MER4A-int LTR ERV1 -5609 1149 764 408 88 0 0 chrX 79043633 79043690 -97930450 - AluSp/q SINE Alu -76 237 181 1952 188 0 19 chrX 79043690 79044052 -97930088 + MER50 LTR ERV1 357 711 -23 18947 246 49 52 chrX 79044053 79050401 -97923739 + MER50-int LTR ERV1 1 6158 -933 2215 131 0 6 chrX 79050792 79051105 -97923035 + AluSx SINE Alu 1 311 -1 21 36 0 0 chrX 79051383 79051411 -97922729 + AT_rich Low_complexity Low_complexity 1 28 0 437 241 11 115 chrX 79052970 79053248 -97920892 + L1MC5 LINE L1 7662 7910 -51 4877 153 32 35 chrX 79053840 79055020 -97919120 - L1PB4 LINE L1 0 6156 4975 435 301 7 29 chrX 79055504 79055640 -97918500 - L2 LINE L2 -3 3310 3178 1618 182 101 56 chrX 79056120 79056566 -97917574 - MER31B LTR ERV1 0 466 1 959 168 6 12 chrX 79056834 79056995 -97917145 - FRAM SINE Alu -19 157 1 267 31 0 0 chrX 79057011 79057043 -97917097 + (TA)n Simple_repeat Simple_repeat 2 33 0 1792 141 37 0 chrX 79057043 79057313 -97916827 - AluSx SINE Alu -32 280 1 377 181 24 0 chrX 79057445 79057528 -97916612 + (CATA)n Simple_repeat Simple_repeat 3 87 0 278 209 26 17 chrX 79057538 79057653 -97916487 + (TTATA)n Simple_repeat Simple_repeat 5 120 0 185 257 14 54 chrX 79058160 79058234 -97915906 + MER5A DNA MER1_type 33 103 -86 311 227 55 86 chrX 79058702 79058903 -97915237 - L1ME2 LINE L1 -280 5884 5674 445 204 7 44 chrX 79059212 79059349 -97914791 - L1MC5 LINE L1 -29 7932 7801 25 31 0 0 chrX 79059558 79059590 -97914550 + AT_rich Low_complexity Low_complexity 1 32 0 747 154 0 22 chrX 79060214 79060350 -97913790 + FLAM_C SINE Alu 1 133 0 1475 241 61 0 chrX 79061176 79061520 -97912620 - MLT1A1 LTR MaLR 0 365 1 297 0 0 0 chrX 79061524 79061557 -97912583 + (TG)n Simple_repeat Simple_repeat 2 34 0 481 309 98 37 chrX 79062487 79062895 -97911245 - L1ME4a LINE L1 -286 5835 5403 182 363 128 0 chrX 79063856 79063958 -97910182 + L2 LINE L2 3199 3313 0 217 333 105 35 chrX 79064334 79064448 -97909692 - L2 LINE L2 -8 3264 3143 2356 243 31 30 chrX 79065400 79065818 -97908322 + L1MD2 LINE L1 5495 5916 -443 1049 230 129 9 chrX 79065818 79066144 -97907996 + MLT1A1 LTR MaLR 1 365 0 2356 243 31 30 chrX 79066144 79066363 -97907777 + L1MD2 LINE L1 5916 6133 -226 432 193 0 0 chrX 79066374 79066457 -97907683 + L1MD1 LINE L1 6081 6163 -79 2431 134 0 19 chrX 79066457 79066823 -97907317 + THE1B LTR MaLR 1 359 -5 21 36 0 0 chrX 79066865 79066893 -97907247 + AT_rich Low_complexity Low_complexity 1 28 0 682 224 37 5 chrX 79066932 79067095 -97907045 + MER45A DNA AcHobo 1 178 0 27 29 0 0 chrX 79068147 79068181 -97905959 + AT_rich Low_complexity Low_complexity 1 34 0 10701 202 32 14 chrX 79068192 79070918 -97903222 - L1PB3 LINE L1 0 6857 4182 2184 129 28 28 chrX 79070918 79071282 -97902858 + THE1B LTR MaLR 1 364 0 10545 114 4 32 chrX 79071282 79072907 -97901233 + THE1B-int LTR MaLR 1 1580 0 2449 117 19 6 chrX 79072907 79073266 -97900874 + THE1B LTR MaLR 1 364 0 10701 202 32 14 chrX 79073266 79074038 -97900102 - L1PB3 LINE L1 -2675 4182 3285 189 107 0 0 chrX 79074038 79074066 -97900074 + (TTG)n Simple_repeat Simple_repeat 1 28 0 10701 202 32 14 chrX 79074066 79074167 -97899973 - L1PB3 LINE L1 -3572 3285 3187 * 18190 192 45 4 chrX 79074159 79075588 -97898552 - L1PA13 LINE L1 -2 6812 5443 203 79 26 0 chrX 79075588 79075626 -97898514 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 18190 192 45 4 chrX 79075626 79079420 -97894720 - L1PA13 LINE L1 -1371 5443 1399 4419 283 91 5 chrX 79079431 79080587 -97893553 - L1PA13 LINE L1 -5532 1255 1 5396 230 68 39 chrX 79080601 79080958 -97893182 - L1PB3 LINE L1 -3656 3193 2848 1642 196 19 26 chrX 79080958 79081336 -97892804 + THE1C LTR MaLR 1 375 0 8752 139 72 9 chrX 79081337 79082823 -97891317 + THE1C-int LTR MaLR 2 1580 0 2041 152 24 22 chrX 79082825 79083194 -97890946 + THE1C LTR MaLR 3 372 -3 5396 230 68 39 chrX 79083194 79084695 -97889445 - L1PB3 LINE L1 -4001 2848 2004 387 0 0 0 chrX 79084695 79084738 -97889402 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5396 230 68 39 chrX 79084738 79086793 -97887347 - L1PB3 LINE L1 -4845 2004 10 189 74 0 0 chrX 79086794 79086821 -97887319 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1235 188 0 9 chrX 79088759 79088977 -97885163 + AluJb SINE Alu 6 221 -91 23 97 0 0 chrX 79089150 79089222 -97884918 + AT_rich Low_complexity Low_complexity 1 72 0 379 284 99 35 chrX 79089472 79089613 -97884527 - L2 LINE L2 -1 3312 3163 238 340 78 0 chrX 79089637 79089740 -97884400 - L2 LINE L2 -661 2653 2543 648 246 118 10 chrX 79090799 79091002 -97883138 - AluJo SINE Alu -4 308 84 4431 66 2 0 chrX 79091496 79092045 -97882095 - HERVFH19I LTR ERV1 -5003 2716 2167 1328 66 33 0 chrX 79092045 79092228 -97881912 - LTR19A LTR ERV1 -297 189 1 1657 208 0 6 chrX 79092265 79092577 -97881563 + AluJb SINE Alu 1 310 -2 385 285 81 8 chrX 79096108 79096231 -97877909 + MIR3 SINE MIR 70 201 -7 233 233 133 0 chrX 79096769 79096829 -97877311 - L2 LINE L2 0 3313 3246 2050 169 23 16 chrX 79096942 79097403 -97876737 - MLT2A2 LTR ERVL -89 461 1 408 299 59 17 chrX 79097669 79098093 -97876047 + L1ME LINE L1 5255 5699 -471 839 251 66 39 chrX 79098161 79098498 -97875642 - MER76 LTR ERV -2 686 318 3203 191 68 0 chrX 79098498 79099117 -97875023 - MER67B LTR ERV1 0 661 1 839 251 66 39 chrX 79099117 79099195 -97874945 - MER76 LTR ERV -370 318 244 1096 228 77 34 chrX 79099204 79099582 -97874558 - MER110A LTR ERV1 -53 415 22 1851 207 28 8 chrX 79100350 79100741 -97873399 + MER74A LTR ERVL 130 528 -30 1242 100 0 0 chrX 79100784 79101298 -97872842 + (TA)n Simple_repeat Simple_repeat 1 514 0 309 242 11 33 chrX 79101299 79101390 -97872750 - L1MC4 LINE L1 -1340 6702 6614 1092 42 0 48 chrX 79101400 79101589 -97872551 + (TA)n Simple_repeat Simple_repeat 1 180 0 658 321 46 8 chrX 79101716 79101953 -97872187 - MIR SINE MIR 0 262 17 236 111 22 0 chrX 79102013 79102058 -97872082 + (TA)n Simple_repeat Simple_repeat 1 46 0 2791 150 28 2 chrX 79102537 79103043 -97871097 - L1MA9 LINE L1 0 6312 5794 567 181 19 0 chrX 79103049 79103154 -97870986 + L1MA9 LINE L1 5990 6096 -216 1020 129 0 0 chrX 79103191 79103346 -97870794 - L1MA9 LINE L1 -498 5793 5639 2949 101 50 14 chrX 79103347 79103791 -97870349 + LTR46 LTR ERV1 1 460 0 3603 117 11 16 chrX 79103791 79104336 -97869804 + LTR46-int LTR ERV1 1 542 -6443 14404 116 12 10 chrX 79104528 79107644 -97866496 + LTR46-int LTR ERV1 658 3790 -3195 * 17261 118 14 4 chrX 79107640 79110349 -97863791 + LTR46-int LTR ERV1 3938 6673 -312 1968 130 3 7 chrX 79110671 79110979 -97863161 + LTR46-int LTR ERV1 6679 6985 0 3027 101 31 18 chrX 79110979 79111433 -97862707 + LTR46 LTR ERV1 1 460 0 2822 210 21 6 chrX 79111433 79112388 -97861752 - L1M2 LINE L1 -649 5642 4670 537 189 114 11 chrX 79112655 79112773 -97861367 - L1MDa LINE L1 -4784 1756 1613 6019 133 33 15 chrX 79112773 79113725 -97860415 - LTR5 LTR ERVK 0 969 1 537 189 114 11 chrX 79113725 79113781 -97860359 - L1MDa LINE L1 -4927 1613 1564 4120 140 53 8 chrX 79113781 79114522 -97859618 + Tigger1 DNA MER2_type 1 774 -1644 7668 204 38 18 chrX 79114528 79116628 -97857512 - L1M2 LINE L1 -1632 4514 2373 446 326 28 6 chrX 79118885 79119063 -97855077 + MIR SINE MIR 75 256 -6 896 233 79 98 chrX 79119070 79119477 -97854663 + MLT1E2 LTR MaLR 1 399 -106 23 0 0 0 chrX 79119585 79119608 -97854532 + AT_rich Low_complexity Low_complexity 1 23 0 1116 281 113 10 chrX 79119763 79120258 -97853882 - MLT1H LTR MaLR -3 546 1 335 222 132 21 chrX 79120756 79120900 -97853240 - L1MC5 LINE L1 -51 7910 7751 884 269 8 0 chrX 79121053 79121302 -97852838 + L1MDb LINE L1 772 1022 -5387 311 212 0 0 chrX 79121307 79121373 -97852767 + MLT2B3 LTR ERVL 6 71 -483 7256 180 19 2 chrX 79121432 79122757 -97851383 + ERVL-B3 LTR ERVL 3896 5242 -522 1735 179 13 31 chrX 79122757 79123266 -97850874 + AluJo SINE Alu 1 503 0 498 33 0 0 chrX 79123305 79123365 -97850775 + (GGAA)n Simple_repeat Simple_repeat 2 61 0 1050 126 0 0 chrX 79123431 79123598 -97850542 + (GAAA)n Simple_repeat Simple_repeat 4 170 0 1352 164 33 9 chrX 79123639 79124126 -97850014 + ERVL-B3 LTR ERVL 5233 5764 0 919 156 92 28 chrX 79124126 79124189 -97849951 + Ricksha DNA DNA 340 416 -838 1766 206 79 7 chrX 79124287 79124690 -97849450 + MLT2B3 LTR ERVL 77 508 -46 229 204 0 0 chrX 79124840 79124889 -97849251 + MLT2B3 LTR ERVL 472 520 0 1045 138 15 196 chrX 79124904 79125161 -97848979 + L1MDb LINE L1 1033 1170 -5239 1537 206 15 4 chrX 79125161 79125428 -97848712 + AluJb SINE Alu 5 274 -38 1045 138 15 196 chrX 79125428 79125634 -97848506 + L1MDb LINE L1 1170 1412 -4997 * 1933 286 135 24 chrX 79125625 79127047 -97847093 + L1M4 LINE L1 3525 5104 -1042 578 245 33 80 chrX 79127050 79127469 -97846671 - MER39 LTR ERV1 -2 705 259 1016 219 8 61 chrX 79129225 79129599 -97844541 + MER31B LTR ERV1 1 466 0 1268 128 44 0 chrX 79130151 79130354 -97843786 - MER30 DNA MER1_type -18 212 1 21 71 0 0 chrX 79130576 79130618 -97843522 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chrX 79130761 79130783 -97843357 + AT_rich Low_complexity Low_complexity 1 22 0 360 167 0 0 chrX 79130955 79131015 -97843125 + L1PB3 LINE L1 5818 5877 -277 3689 163 33 35 chrX 79131015 79131751 -97842389 + MER50 LTR ERV1 1 734 0 2975 175 18 5 chrX 79131751 79132664 -97841476 + MER50-int LTR ERV1 1 988 -6217 3629 151 35 48 chrX 79132686 79133277 -97840863 + MER50-int LTR ERV1 1126 1709 -5496 2138 95 11 7 chrX 79133277 79133587 -97840553 - AluSp SINE Alu 0 311 1 3629 151 35 48 chrX 79133587 79133727 -97840413 + MER50-int LTR ERV1 1709 1849 -5356 * 7646 212 30 18 chrX 79133724 79135508 -97838632 + MER50-int LTR ERV1 2788 4593 -2612 1632 101 0 0 chrX 79135514 79135751 -97838389 - THE1A-int LTR MaLR -1138 442 206 1677 142 17 10 chrX 79135757 79136052 -97838088 - THE1A LTR MaLR -58 297 1 313 115 37 7 chrX 79136052 79136120 -97838020 + MER50-int LTR ERV1 4381 4447 -1499 * 6536 114 29 42 chrX 79136110 79137265 -97836875 + MER50-int LTR ERV1 5059 6198 -1007 1383 108 0 14 chrX 79137318 79137530 -97836610 + MER50-int LTR ERV1 6989 7197 -8 1556 161 29 0 chrX 79137530 79137810 -97836330 + MER50 LTR ERV1 1 288 -446 605 131 0 10 chrX 79137811 79137910 -97836230 + MER4A LTR ERV1 1 98 -566 1809 128 171 20 chrX 79137910 79138261 -97835879 + MER4A LTR ERV1 261 664 0 10833 116 118 45 chrX 79138264 79140598 -97833542 + MER4A-int LTR ERV1 1 2503 -4095 1126 194 5 0 chrX 79140604 79140820 -97833320 - LTR8 LTR ERV1 -474 217 1 1472 160 70 3 chrX 79140820 79141208 -97832932 + MER4A-int LTR ERV1 2737 3150 -3448 1322 168 45 35 chrX 79141236 79141610 -97832530 + MER4A-int LTR ERV1 3304 3681 -2917 192 40 0 0 chrX 79141625 79141650 -97832490 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 28861 111 8 24 chrX 79141650 79142314 -97831826 - L1PA7 LINE L1 -18 6451 5778 2399 86 0 3 chrX 79142314 79142618 -97831522 - AluSc SINE Alu -6 303 1 28861 111 8 24 chrX 79142618 79148405 -97825735 - L1PA7 LINE L1 -691 5778 1 9756 118 43 21 chrX 79148406 79150245 -97823895 + MER4A-int LTR ERV1 3845 5724 -874 1369 143 5 9 chrX 79150245 79150469 -97823671 + MER4A LTR ERV1 442 664 0 1919 204 24 5 chrX 79150473 79150884 -97823256 + MER50 LTR ERV1 293 711 -23 1630 174 0 4 chrX 79150885 79151160 -97822980 + L1PB3 LINE L1 5879 6152 -2 1616 209 0 20 chrX 79151502 79151803 -97822337 - AluJo SINE Alu -17 295 1 2022 134 0 10 chrX 79151919 79152209 -97821931 - AluSx SINE Alu -25 287 1 2301 83 0 42 chrX 79152262 79152574 -97821566 - AluY SINE Alu -8 303 5 29 0 0 0 chrX 79152726 79152755 -97821385 + AT_rich Low_complexity Low_complexity 1 29 0 263 350 36 29 chrX 79153507 79153647 -97820493 - L2 LINE L2 -31 3241 3101 17062 193 50 30 chrX 79153878 79158774 -97815366 + L1M1 LINE L1 17 5010 -2555 2190 99 0 0 chrX 79158837 79159157 -97814983 + AluSc SINE Alu 1 320 0 24 53 0 0 chrX 79159737 79159775 -97814365 + AT_rich Low_complexity Low_complexity 1 38 0 2152 143 75 36 chrX 79159865 79160277 -97813863 + MSTA LTR MaLR 1 428 0 1754 29 0 0 chrX 79161786 79161994 -97812146 + L1PA4 LINE L1 5940 6147 -8 22 35 0 0 chrX 79162781 79162810 -97811330 + AT_rich Low_complexity Low_complexity 1 29 0 207 333 67 44 chrX 79163185 79163275 -97810865 - L2 LINE L2 -8 3264 3173 215 348 16 76 chrX 79163392 79163576 -97810564 - L2 LINE L2 -189 3083 2911 1155 230 44 4 chrX 79164530 79164778 -97809362 + Tigger7 DNA MER2_type 7 264 -2223 483 214 10 10 chrX 79164778 79164876 -97809264 + Tigger7 DNA MER2_type 2490 2587 0 341 361 37 45 chrX 79164904 79165148 -97808992 + MIR SINE MIR 2 243 -19 300 339 89 9 chrX 79165339 79165451 -97808689 + L2 LINE L2 3188 3308 -5 2321 75 20 32 chrX 79165522 79165869 -97808271 + L1PA12 LINE L1 5824 6166 -2 430 335 45 0 chrX 79166464 79166619 -97807521 + L2 LINE L2 1079 1240 -2074 346 141 109 16 chrX 79167064 79167192 -97806948 + (TTATA)n Simple_repeat Simple_repeat 1 140 0 28 0 0 0 chrX 79167201 79167229 -97806911 + AT_rich Low_complexity Low_complexity 1 28 0 2268 96 0 3 chrX 79167240 79167533 -97806607 + AluY SINE Alu 1 292 -19 16712 167 19 16 chrX 79167682 79170653 -97803487 - L1PA15-16 LINE L1 -3870 2979 1 496 256 48 57 chrX 79170676 79170903 -97803237 - HAL1 LINE L1 0 2507 2283 21 0 0 0 chrX 79171084 79171105 -97803035 + AT_rich Low_complexity Low_complexity 1 21 0 738 295 91 21 chrX 79172073 79172314 -97801826 + MIR SINE MIR 5 262 0 22 0 0 0 chrX 79173078 79173100 -97801040 + AT_rich Low_complexity Low_complexity 1 22 0 220 329 71 32 chrX 79173603 79173758 -97800382 + MIR SINE MIR 92 252 -10 626 164 10 0 chrX 79174018 79174122 -97800018 + U6 snRNA snRNA 1 105 -2 9258 242 80 18 chrX 79174142 79178310 -97795830 + L1PA16 LINE L1 1706 6144 -22 29 28 0 0 chrX 79178310 79178346 -97795794 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chrX 79178797 79178825 -97795315 + AT_rich Low_complexity Low_complexity 1 28 0 376 325 29 21 chrX 79179363 79179669 -97794471 + L1 LINE L1 3519 3822 -2324 350 252 19 0 chrX 79179677 79179780 -97794360 + L1MA10 LINE L1 6228 6332 -2 346 278 77 18 chrX 79179953 79180122 -97794018 - L1MCa LINE L1 -4197 2229 2051 1885 246 27 8 chrX 79180159 79180969 -97793171 + L1MC2 LINE L1 2247 3073 -3353 * 2628 247 74 15 chrX 79180962 79182279 -97791861 + L1MC2 LINE L1 4477 5873 -750 7025 204 12 7 chrX 79182279 79184780 -97789360 - L1PA16 LINE L1 0 6166 3658 3336 171 47 27 chrX 79184780 79185454 -97788686 + L1MC2 LINE L1 5859 6566 -58 2384 59 0 26 chrX 79185454 79185759 -97788381 - AluY SINE Alu -14 297 1 3336 171 47 27 chrX 79185759 79185809 -97788331 + L1MC2 LINE L1 6566 6614 -10 280 275 68 2 chrX 79185903 79186006 -97788134 + MIR SINE MIR 36 143 -65 29 28 0 0 chrX 79187512 79187548 -97786592 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chrX 79188295 79188325 -97785815 + AT_rich Low_complexity Low_complexity 1 30 0 834 242 23 104 chrX 79189258 79189651 -97784489 - MLT1A1 LTR MaLR 0 365 5 1957 87 83 4 chrX 79190612 79190888 -97783252 + AluSq SINE Alu 1 298 -15 24 67 0 0 chrX 79191100 79191145 -97782995 + AT_rich Low_complexity Low_complexity 1 45 0 2002 201 124 92 chrX 79192367 79193118 -97781022 - LTR48 LTR ERV1 0 787 13 22 35 0 0 chrX 79193421 79193450 -97780690 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chrX 79194305 79194342 -97779798 + AT_rich Low_complexity Low_complexity 1 37 0 3736 151 29 52 chrX 79194455 79194935 -97779205 + MER50 LTR ERV1 1 459 -275 2426 72 7 0 chrX 79194935 79195242 -97778898 + AluSc SINE Alu 1 309 0 3736 151 29 52 chrX 79195242 79195512 -97778628 + MER50 LTR ERV1 459 734 0 4878 146 8 4 chrX 79195512 79196267 -97777873 + MER50-int LTR ERV1 1 758 -6447 297 79 0 0 chrX 79196266 79196304 -97777836 - MER50-int LTR ERV1 -6411 794 757 * 851 96 15 37 chrX 79196318 79196453 -97777687 + MER50-int LTR ERV1 763 894 -6311 5786 94 8 24 chrX 79196453 79197297 -97776843 - L1PA10 LINE L1 -17 6151 5321 1414 161 11 72 chrX 79197297 79197576 -97776564 - AluSx SINE Alu -13 299 38 13160 146 9 2 chrX 79197589 79199790 -97774350 - L1PA10 LINE L1 -847 5299 3082 15561 149 23 34 chrX 79199790 79203997 -97770143 + MER41-int LTR ERV1 446 5649 -1556 189 265 61 0 chrX 79203997 79204046 -97770094 - MIR SINE MIR -88 120 69 15561 149 23 34 chrX 79204046 79204422 -97769718 + MER41-int LTR ERV1 5649 6028 -1177 2095 110 13 13 chrX 79204419 79204736 -97769404 + MER50-int LTR ERV1 6881 7197 -8 * 3914 180 16 8 chrX 79204736 79205442 -97768698 + MER50 LTR ERV1 1 711 -23 2552 221 58 24 chrX 79205449 79206029 -97768111 - LTR39 LTR ERV1 -29 754 150 1451 186 72 31 chrX 79206029 79206389 -97767751 - THE1C LTR MaLR 0 375 1 2552 221 58 24 chrX 79206389 79206427 -97767713 - LTR39 LTR ERV1 -633 150 115 9145 146 13 35 chrX 79206427 79208004 -97766136 - THE1C-int LTR MaLR -36 1544 4 984 150 13 53 chrX 79208007 79208208 -97765932 - THE1B LTR MaLR 0 364 193 1297 257 49 60 chrX 79208209 79208679 -97765461 - L1MCa LINE L1 -5915 511 47 10858 225 21 40 chrX 79209221 79212869 -97761271 + L1PA15 LINE L1 1459 5072 -1725 1974 200 56 12 chrX 79212874 79213284 -97760856 - MSTA LTR MaLR 0 428 1 7468 228 15 8 chrX 79213287 79214925 -97759215 - MSTA-int LTR MaLR -3 1648 1 1964 190 80 3 chrX 79214925 79215314 -97758826 - MSTA LTR MaLR 0 428 10 980 223 119 7 chrX 79215323 79215601 -97758539 + L1PA15 LINE L1 5074 5382 -1415 1589 195 13 6 chrX 79215635 79215948 -97758192 + L1PA15 LINE L1 6502 6816 0 720 252 0 43 chrX 79215948 79216158 -97757982 + L1PA16 LINE L1 5961 6161 -5 1954 86 0 4 chrX 79216530 79216786 -97757354 + AluY SINE Alu 44 298 -13 2243 128 17 3 chrX 79216973 79217333 -97756807 - L1PB1 LINE L1 -1 6866 6502 327 104 0 0 chrX 79217333 79217381 -97756759 + (TA)n Simple_repeat Simple_repeat 2 49 0 13446 202 47 20 chrX 79217383 79217556 -97756584 - L1PB1 LINE L1 -409 6458 6291 4623 98 140 26 chrX 79217556 79218297 -97755843 + LTR12 LTR ERV1 1 826 0 13446 202 47 20 chrX 79218297 79222278 -97751862 - L1PB1 LINE L1 -576 6291 2418 274 81 0 0 chrX 79222278 79222315 -97751825 + MADE1 DNA Mariner 3 39 -41 13446 202 47 20 chrX 79222315 79222745 -97751395 - L1PB1 LINE L1 -4449 2418 2001 207 0 0 0 chrX 79222745 79222768 -97751372 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 13446 202 47 20 chrX 79222768 79223121 -97751019 - L1PB1 LINE L1 -4866 2001 1326 7372 235 44 41 chrX 79223228 79225031 -97749109 - L1MC1 LINE L1 -17 6596 4799 1591 190 67 22 chrX 79225031 79225206 -97748934 - THE1C LTR MaLR -1 374 208 414 39 0 0 chrX 79225206 79225258 -97748882 + (TG)n Simple_repeat Simple_repeat 2 53 0 1591 190 67 22 chrX 79225258 79225440 -97748700 - THE1C LTR MaLR -167 208 1 7372 235 44 41 chrX 79225440 79226497 -97747643 - L1MC1 LINE L1 -1814 4799 3727 2298 90 6 3 chrX 79226497 79226808 -97747332 - AluSx SINE Alu 0 312 1 7372 235 44 41 chrX 79226808 79227645 -97746495 - L1MC1 LINE L1 -2886 3727 2894 441 215 54 0 chrX 79227663 79227756 -97746384 - L1MC1 LINE L1 -6310 116 19 189 147 0 0 chrX 79227981 79228015 -97746125 + (TA)n Simple_repeat Simple_repeat 1 34 0 3911 180 10 1 chrX 79228200 79228871 -97745269 + Tigger1 DNA MER2_type 1 677 -1741 7888 157 19 41 chrX 79228888 79230380 -97743760 + Tigger1 DNA MER2_type 959 2417 -1 794 324 76 10 chrX 79230426 79230910 -97743230 - Charlie7 DNA MER1_type -2054 558 43 2322 61 3 16 chrX 79231018 79231330 -97742810 - AluY SINE Alu -3 308 1 343 345 40 23 chrX 79231397 79231574 -97742566 - MIR SINE MIR -82 180 1 559 311 46 41 chrX 79231681 79231784 -97742356 - MIR SINE MIR -3 259 158 890 223 43 114 chrX 79231784 79232179 -97741961 - MLT1A2 LTR MaLR -4 370 4 559 311 46 41 chrX 79232179 79232294 -97741846 - MIR SINE MIR -104 158 40 23 86 0 0 chrX 79232929 79232987 -97741153 + AT_rich Low_complexity Low_complexity 1 58 0 38 22 0 0 chrX 79233181 79233226 -97740914 + AT_rich Low_complexity Low_complexity 1 45 0 667 138 0 28 chrX 79233817 79233926 -97740214 + FLAM_C SINE Alu 23 128 -15 200 206 0 0 chrX 79234043 79234077 -97740063 + polypyrimidine Low_complexity Low_complexity 1 34 0 2712 222 26 22 chrX 79234151 79234796 -97739344 - MER82 DNA MER2_type -4 649 2 5082 169 0 19 chrX 79234903 79235576 -97738564 - L1PA15 LINE L1 -2 6163 5498 207 0 0 0 chrX 79235576 79235599 -97738541 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 5082 169 0 19 chrX 79235599 79236001 -97738139 - L1PA15 LINE L1 -667 5498 5090 2423 242 18 11 chrX 79236802 79237311 -97736829 + MLT2B3 LTR ERVL 1 516 -38 240 35 0 0 chrX 79237311 79237340 -97736800 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2423 242 18 11 chrX 79237340 79237380 -97736760 + MLT2B3 LTR ERVL 516 554 0 6071 120 42 12 chrX 79238813 79239833 -97734307 - L1MA2 LINE L1 0 6304 5254 945 255 93 18 chrX 79240583 79240971 -97733169 + Charlie4a DNA MER1_type 2 418 -90 1661 145 3 77 chrX 79240982 79241355 -97732785 - MER4A LTR ERV1 0 664 261 580 121 10 20 chrX 79241355 79241454 -97732686 - MER4A LTR ERV1 -566 98 1 13245 121 52 71 chrX 79241481 79244295 -97729845 - MER4A-int LTR ERV1 -2 6596 3837 3288 171 76 25 chrX 79244294 79245172 -97728968 - MER4A-int LTR ERV1 -2917 3681 2759 * 900 180 218 0 chrX 79245178 79245389 -97728751 + LTR8 LTR ERV1 1 257 -434 3726 99 96 18 chrX 79245389 79246068 -97728072 - MER4A-int LTR ERV1 -4103 2495 1764 1424 125 42 27 chrX 79246065 79246340 -97727800 - MER4A-int LTR ERV1 -5573 1185 794 * 3966 156 12 24 chrX 79246361 79247028 -97727112 - MER4A-int LTR ERV1 -5911 847 189 1207 260 85 3 chrX 79247048 79247367 -97726773 - MER4A-int LTR ERV1 -4127 2204 1860 2519 124 172 8 chrX 79247538 79248087 -97726053 - MER4A-int LTR ERV1 -5912 686 1 1560 136 157 118 chrX 79248090 79248479 -97725661 - MER4A LTR ERV1 0 664 261 521 192 0 10 chrX 79248479 79248578 -97725562 - MER4A LTR ERV1 -566 98 1 312 262 0 12 chrX 79248578 79248661 -97725479 + Charlie4a DNA MER1_type 426 507 -1 3433 158 131 20 chrX 79248828 79249581 -97724559 - pTR5 LTR ERV1 0 2606 1524 2638 161 19 31 chrX 79249587 79250207 -97723933 - pTR5 LTR ERV1 -1085 1353 741 224 206 82 41 chrX 79251027 79251100 -97723040 - L2 LINE L2 -88 3225 3150 1805 142 29 0 chrX 79251270 79251566 -97722574 + AluSx SINE Alu 1 304 0 21 0 0 0 chrX 79251668 79251689 -97722451 + AT_rich Low_complexity Low_complexity 1 21 0 13207 184 28 16 chrX 79251689 79256687 -97717453 - L1MA1 LINE L1 0 7721 2529 405 0 0 0 chrX 79256790 79256835 -97717305 + (CA)n Simple_repeat Simple_repeat 2 46 0 12896 205 36 15 chrX 79256848 79258982 -97715158 - L1PB1 LINE L1 -8 6859 4772 2116 114 0 29 chrX 79258982 79259289 -97714851 - AluSc SINE Alu -8 301 4 12896 205 36 15 chrX 79259289 79259529 -97714611 - L1PB1 LINE L1 -2095 4772 4539 1863 166 3 0 chrX 79259529 79259881 -97714259 - AluSx SINE Alu 0 353 1 12896 205 36 15 chrX 79259881 79264055 -97710085 - L1PB1 LINE L1 -2328 4539 3 10092 191 50 1 chrX 79264064 79264828 -97709312 - L1MA1 LINE L1 -5004 2561 1836 237 33 0 0 chrX 79264828 79264858 -97709282 + (TC)n Simple_repeat Simple_repeat 1 30 0 10092 191 50 1 chrX 79264858 79265978 -97708162 - L1MA1 LINE L1 -5729 1836 584 346 217 43 0 chrX 79266119 79266211 -97707929 + L1ME LINE L1 5713 5808 -354 31 44 0 0 chrX 79266585 79266630 -97707510 + AT_rich Low_complexity Low_complexity 1 45 0 3677 152 33 45 chrX 79267297 79267776 -97706364 + LTR62 LTR ERVK 6 476 -243 2555 46 0 0 chrX 79267776 79268080 -97706060 - AluY SINE Alu -7 304 1 3677 152 33 45 chrX 79268080 79268318 -97705822 + LTR62 LTR ERVK 476 715 -4 318 301 21 21 chrX 79270099 79270192 -97703948 - L2 LINE L2 -78 3194 3102 233 284 84 11 chrX 79272795 79272890 -97701250 - MIR SINE MIR -2 260 159 6720 76 1 8 chrX 79272891 79274559 -97699581 + L1PA8 LINE L1 4510 6172 0 26 74 0 0 chrX 79274584 79274638 -97699502 + AT_rich Low_complexity Low_complexity 1 54 0 305 366 0 9 chrX 79274674 79274786 -97699354 - MIR SINE MIR -150 112 2 549 316 76 17 chrX 79274832 79275069 -97699071 - MIR SINE MIR -7 255 5 348 279 98 66 chrX 79275302 79275546 -97698594 - L2 LINE L2 -28 3285 3034 1460 244 123 34 chrX 79275659 79276130 -97698010 - MLT1E LTR MaLR -73 520 8 185 0 40 0 chrX 79276156 79276181 -97697959 + (TA)n Simple_repeat Simple_repeat 1 26 0 2928 216 55 19 chrX 79276663 79277403 -97696737 + L1MC3 LINE L1 5384 6150 -1635 24 53 0 0 chrX 79277415 79277453 -97696687 + AT_rich Low_complexity Low_complexity 1 38 0 1113 116 33 0 chrX 79277851 79278032 -97696108 + L1MA6 LINE L1 6114 6300 0 26 64 0 0 chrX 79278454 79278501 -97695639 + AT_rich Low_complexity Low_complexity 1 47 0 223 321 12 0 chrX 79278629 79278713 -97695427 - MIR SINE MIR -2 260 176 6383 164 43 3 chrX 79279405 79280813 -97693327 - L1MA1 LINE L1 0 6302 4832 11685 188 9 43 chrX 79280910 79281063 -97693077 + ERVL-B2 LTR ERVL 3505 3662 -2102 2106 218 24 5 chrX 79281063 79281481 -97692659 + MSTB LTR MaLR 1 426 0 11685 188 9 43 chrX 79281481 79282243 -97691897 + ERVL-B2 LTR ERVL 3662 4448 -1316 2002 211 16 23 chrX 79282243 79282678 -97691462 + MSTB1 LTR MaLR 1 432 0 11685 188 9 43 chrX 79282678 79284090 -97690050 + ERVL-B2 LTR ERVL 4448 5755 -9 1837 224 116 9 chrX 79284092 79284539 -97689601 + MLT2B2 LTR ERVL 1 495 -20 252 174 0 0 chrX 79284539 79284585 -97689555 + MLT2B2 LTR ERVL 464 509 -6 610 58 0 0 chrX 79284645 79284731 -97689409 - L1MA1 LINE L1 -4 6298 6213 195 324 127 12 chrX 79284889 79285062 -97689078 + L2 LINE L2 3121 3313 0 21 36 0 0 chrX 79285210 79285238 -97688902 + AT_rich Low_complexity Low_complexity 1 28 0 2326 279 61 13 chrX 79285256 79286111 -97688029 + L1MEc LINE L1 255 940 -4968 1296 122 0 0 chrX 79286176 79286356 -97687784 + AluSg/x SINE Alu 110 289 -20 310 204 10 87 chrX 79286356 79286459 -97687681 + L1MC4 LINE L1 6609 6703 -1339 341 253 23 0 chrX 79286470 79286557 -97687583 + L1MC4 LINE L1 6615 6703 -1339 555 265 96 48 chrX 79286559 79286582 -97687558 + L1MEc LINE L1 1277 1297 -5129 1528 221 14 19 chrX 79286582 79286949 -97687191 + MLT1A1 LTR MaLR 1 365 0 555 265 96 48 chrX 79286949 79287233 -97686907 + L1MEc LINE L1 1297 1554 -4872 1363 247 76 83 chrX 79287256 79287554 -97686586 - MLT1F1 LTR MaLR -4 563 244 3718 164 110 17 chrX 79287554 79288310 -97685830 + LTR1B LTR ERV1 1 826 0 1363 247 76 83 chrX 79288310 79288553 -97685587 - MLT1F1 LTR MaLR -323 244 1 384 272 5 82 chrX 79288571 79288766 -97685374 + L1MEc LINE L1 1428 1607 -4819 296 280 20 0 chrX 79288823 79288923 -97685217 + L1M4 LINE L1 3827 3928 -2218 558 224 67 11 chrX 79289889 79290071 -97684069 - L1MC3 LINE L1 -2 7764 6129 2033 196 43 20 chrX 79290101 79290591 -97683549 - L1MB8 LINE L1 -4 6174 5674 1184 238 90 6 chrX 79290596 79290907 -97683233 + MLT2C1 LTR ERVL 5 341 -56 276 337 17 12 chrX 79290957 79291129 -97683011 + MERVL LTR ERVL 765 937 -4548 69 72 0 0 chrX 79291154 79291293 -97682847 + AT_rich Low_complexity Low_complexity 1 139 0 514 263 18 0 chrX 79291293 79291407 -97682733 + MERVL LTR ERVL 1062 1177 -4587 * 7255 242 51 5 chrX 79291387 79293074 -97681066 + MERVL LTR ERVL 1851 3615 -2149 2150 259 20 67 chrX 79293077 79294004 -97680136 - L1M4b LINE L1 -1958 4999 4116 210 71 0 0 chrX 79294036 79294064 -97680076 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 618 189 0 0 chrX 79294064 79294175 -97679965 - FLAM_C SINE Alu -24 119 9 2594 248 54 49 chrX 79294183 79294565 -97679575 - L1M4b LINE L1 -2851 4106 3727 1540 106 8 0 chrX 79294565 79294802 -97679338 - L1MA3 LINE L1 0 6305 6067 2594 248 54 49 chrX 79294802 79294931 -97679209 - L1M4b LINE L1 -3230 3727 3600 2177 124 0 0 chrX 79294931 79295229 -97678911 - AluSg SINE Alu -12 298 1 2594 248 54 49 chrX 79295229 79296243 -97677897 - L1M4b LINE L1 -3357 3600 2623 22 35 0 0 chrX 79296247 79296276 -97677864 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chrX 79296317 79296353 -97677787 + AT_rich Low_complexity Low_complexity 1 36 0 254 224 24 94 chrX 79296784 79296869 -97677271 + LTR25 LTR ERV1 280 358 -436 254 284 0 95 chrX 79296871 79296966 -97677174 + MER61E LTR ERV1 100 185 -384 916 142 32 1 chrX 79297048 79297231 -97676909 + MER61E LTR ERV1 340 774 -20 3315 287 106 35 chrX 79297248 79299412 -97674728 - L1M4b LINE L1 -4628 2331 6 2313 53 7 13 chrX 79299429 79299731 -97674409 + AluY SINE Alu 1 300 -11 1373 197 21 4 chrX 79299731 79300010 -97674130 - L1MC3 LINE L1 -198 7587 7304 3209 242 91 118 chrX 79300014 79301681 -97672459 - L1MCb LINE L1 -4785 1779 1 2202 105 3 7 chrX 79302180 79302476 -97671664 + AluSp SINE Alu 1 295 -18 1887 140 25 69 chrX 79302785 79303123 -97671017 - THE1C LTR MaLR 0 375 55 2780 123 75 6 chrX 79303123 79303601 -97670539 + MER9 LTR ERVK 1 511 0 1887 140 25 69 chrX 79303601 79303654 -97670486 - THE1C LTR MaLR -320 55 1 283 213 25 25 chrX 79303715 79303795 -97670345 + MIR SINE MIR 183 262 0 944 275 134 10 chrX 79303854 79304207 -97669933 + MSTD LTR MaLR 4 394 -2 258 270 70 0 chrX 79304210 79304310 -97669830 + L1MC4a LINE L1 5556 5662 -459 44 20 0 0 chrX 79304310 79304361 -97669779 + AT_rich Low_complexity Low_complexity 1 51 0 688 283 57 16 chrX 79304386 79304717 -97669423 + MLT1E1 LTR MaLR 1 392 -262 789 208 13 0 chrX 79304772 79304926 -97669214 + AluSg/x SINE Alu 157 312 0 2509 254 55 43 chrX 79304994 79305769 -97668371 + L1MB7 LINE L1 8 792 -5750 320 293 29 0 chrX 79305766 79305940 -97668200 + L1MB7 LINE L1 3263 3441 -3203 * 325 231 154 28 chrX 79305936 79306079 -97668061 + L1MB7 LINE L1 4129 4289 -2355 3806 155 65 9 chrX 79306081 79306753 -97667387 + MER50 LTR ERV1 1 710 -24 2712 259 72 16 chrX 79306762 79308012 -97666128 + L1MB7 LINE L1 4295 5474 -1208 2423 62 0 16 chrX 79308012 79308317 -97665823 - AluY SINE Alu -11 300 1 2712 259 72 16 chrX 79308317 79308641 -97665499 + L1MB7 LINE L1 5474 5779 -903 204 97 0 0 chrX 79308641 79308672 -97665468 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2712 259 72 16 chrX 79308672 79309084 -97665056 + L1MB7 LINE L1 5779 6401 -281 1504 192 23 169 chrX 79309084 79309605 -97664535 + MER21A LTR ERV1 1 445 -486 287 259 48 24 chrX 79309710 79309876 -97664264 + L1ME4a LINE L1 5884 6053 -68 828 271 20 10 chrX 79309988 79310191 -97663949 + MLT1E1 LTR MaLR 450 654 0 324 333 8 0 chrX 79310192 79310309 -97663831 + L1MC4a LINE L1 5769 5886 -1922 389 313 14 20 chrX 79310402 79310549 -97663591 - MLT1L LTR MaLR -36 579 434 421 313 108 23 chrX 79310575 79310789 -97663351 - MIR SINE MIR 0 262 31 626 267 114 25 chrX 79311230 79311466 -97662674 - MIR SINE MIR -3 259 3 22 35 0 0 chrX 79311622 79311651 -97662489 + AT_rich Low_complexity Low_complexity 1 29 0 269 311 55 70 chrX 79311817 79312003 -97662137 - MIR SINE MIR -56 206 18 246 316 48 42 chrX 79312215 79312383 -97661757 + PABL_B LTR ERV1 1 169 -498 760 202 123 18 chrX 79312427 79312655 -97661485 + PABL_B LTR ERV1 416 667 0 2324 151 129 59 chrX 79312755 79313312 -97660828 + LTR4 LTR ERV1 1 596 0 345 245 84 39 chrX 79313355 79313510 -97660630 + LTR43 LTR ERV1 184 345 -257 323 148 49 0 chrX 79313548 79313609 -97660531 + LTR35 LTR ERV1 471 534 -84 1968 228 23 37 chrX 79313609 79314137 -97660003 + MLT2B3 LTR ERVL 1 409 -44 247 132 44 15 chrX 79314186 79314254 -97659886 + (TA)n Simple_repeat Simple_repeat 1 70 0 291 125 88 6 chrX 79314267 79314427 -97659713 + (TA)n Simple_repeat Simple_repeat 2 174 0 31 44 0 0 chrX 79314445 79314490 -97659650 + AT_rich Low_complexity Low_complexity 1 45 0 312 136 53 15 chrX 79314490 79314622 -97659518 + (TA)n Simple_repeat Simple_repeat 1 137 0 310 253 0 42 chrX 79314623 79314718 -97659422 + L1MC4 LINE L1 6614 6704 -1338 335 286 0 0 chrX 79314734 79314825 -97659315 + L1MC4 LINE L1 6615 6705 -1337 560 155 25 0 chrX 79314825 79314986 -97659154 + (TA)n Simple_repeat Simple_repeat 2 166 0 307 172 0 17 chrX 79314987 79315045 -97659095 + MLT2B3 LTR ERVL 397 453 0 * 619 140 0 11 chrX 79315045 79315135 -97659005 + LTR35 LTR ERV1 530 618 0 1972 147 16 0 chrX 79315237 79315544 -97658596 + AluSx SINE Alu 1 312 0 2298 176 70 50 chrX 79315831 79316315 -97657825 - LTR26B LTR ERV1 -37 494 1 1473 161 50 50 chrX 79316478 79316820 -97657320 + MER4A LTR ERV1 1 342 -322 432 153 266 16 chrX 79316968 79317092 -97657048 + MER4C LTR ERV1 291 445 -20 1246 231 116 54 chrX 79317092 79317784 -97656356 + MER61E LTR ERV1 1 777 -2 2290 153 135 41 chrX 79317881 79318398 -97655742 - LTR49 LTR ERV1 -29 566 1 664 269 5 46 chrX 79318466 79318682 -97655458 + MLT1E1 LTR MaLR 448 654 0 40 72 0 18 chrX 79319000 79319041 -97655099 + AT_rich Low_complexity Low_complexity 1 41 -68 1367 182 93 11 chrX 79319041 79319310 -97654830 - AluJb SINE Alu -21 291 1 40 72 0 18 chrX 79319310 79319379 -97654761 + AT_rich Low_complexity Low_complexity 41 109 0 1107 293 84 61 chrX 79319392 79319665 -97654475 + L1ME3A LINE L1 3898 4163 -1983 2375 86 0 0 chrX 79319665 79319969 -97654171 - AluSq SINE Alu -9 304 1 1107 293 84 61 chrX 79319969 79320013 -97654127 + L1ME3A LINE L1 4163 4204 -1942 1765 195 3 0 chrX 79320013 79320315 -97653825 - AluJb SINE Alu -9 303 1 1107 293 84 61 chrX 79320315 79320548 -97653592 + L1ME3A LINE L1 4204 4430 -1716 1999 95 21 7 chrX 79320548 79320865 -97653275 - AluY SINE Alu 0 311 1 1107 293 84 61 chrX 79320865 79321625 -97652515 + L1ME3A LINE L1 4430 5241 -905 1732 198 31 33 chrX 79321733 79322158 -97651982 - MLT2D LTR ERVL 0 464 10 693 277 32 25 chrX 79322432 79322714 -97651426 + L1ME3A LINE L1 5668 5951 -219 384 281 47 23 chrX 79323996 79324124 -97650016 + MIR SINE MIR 122 252 -10 378 284 63 0 chrX 79324313 79324408 -97649732 + MER99 DNA DNA 1 101 -727 39 92 0 0 chrX 79324645 79324754 -97649386 + AT_rich Low_complexity Low_complexity 1 109 0 2226 236 69 20 chrX 79325092 79325697 -97648443 + MER99 DNA DNA 192 826 -2 265 124 83 18 chrX 79325891 79326060 -97648080 + (TA)n Simple_repeat Simple_repeat 1 180 0 502 107 88 0 chrX 79326102 79326261 -97647879 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 65 0 0 chrX 79326479 79326525 -97647615 + AT_rich Low_complexity Low_complexity 1 46 0 1533 176 22 6 chrX 79326732 79327223 -97646917 + LTR27 LTR ERV1 1 501 0 518 110 0 0 chrX 79327251 79327324 -97646816 + Alu SINE Alu 226 298 -11 222 113 0 57 chrX 79327340 79327393 -97646747 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 224 271 0 0 chrX 79328133 79328181 -97645959 - L2 LINE L2 -12 3260 3213 15572 47 37 2 chrX 79328325 79330344 -97643796 - L1P LINE L1 -1105 5041 2954 207 69 0 0 chrX 79330353 79330382 -97643758 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1182 144 10 5 chrX 79330388 79330596 -97643544 - L1MA1 LINE L1 0 6302 6094 211 360 18 9 chrX 79330933 79331044 -97643096 + L2 LINE L2 1875 1986 -1328 2421 117 48 0 chrX 79331044 79331402 -97642738 + THE1C LTR MaLR 1 375 0 2586 131 101 5 chrX 79331402 79331837 -97642303 + THE1C-int LTR MaLR 1 477 -1103 1152 139 30 2 chrX 79331839 79332027 -97642113 - LTR12 LTR ERV1 -156 558 276 362 271 17 0 chrX 79332029 79332147 -97641993 - LTR30 LTR ERV1 -79 643 524 1813 124 127 19 chrX 79332147 79332469 -97641671 - pTR5 LTR ERV1 -432 2006 1650 833 201 52 34 chrX 79332561 79332829 -97641311 - pTR5 LTR ERV1 -1410 1028 756 7021 147 14 9 chrX 79332829 79333942 -97640198 + THE1C-int LTR MaLR 463 1580 0 2366 137 16 8 chrX 79333942 79334314 -97639826 + THE1C LTR MaLR 1 375 0 25 31 0 0 chrX 79335609 79335641 -97638499 + AT_rich Low_complexity Low_complexity 1 32 0 268 301 13 78 chrX 79335982 79336135 -97638005 + MER5B DNA MER1_type 2 144 -34 313 209 64 122 chrX 79336551 79336723 -97637417 + HAL1b LINE L1 1187 1348 0 362 306 8 8 chrX 79337669 79337790 -97636350 + MLT1L LTR MaLR 133 253 -362 228 322 119 0 chrX 79337860 79337978 -97636162 + MLT1L LTR MaLR 482 613 -2 323 327 125 48 chrX 79338543 79338815 -97635325 - L1MC/D LINE L1 -2005 5803 5511 791 235 89 0 chrX 79339360 79339539 -97634601 + MER58A DNA MER1_type 1 195 -29 266 320 107 40 chrX 79341066 79341291 -97632849 + L2 LINE L2 1549 1788 -1526 5433 218 35 7 chrX 79341721 79344326 -97629814 - L1MC1 LINE L1 -18 6595 3931 1652 230 19 74 chrX 79344362 79345104 -97629036 - L1MC1 LINE L1 -3382 3044 2346 1453 128 0 0 chrX 79345104 79345315 -97628825 - AluSg/x SINE Alu -5 305 95 620 223 51 0 chrX 79345403 79345560 -97628580 - L1PA16 LINE L1 0 6166 6002 9421 238 16 13 chrX 79345754 79348231 -97625909 - L1PA16 LINE L1 -178 5988 3500 207 0 0 0 chrX 79348231 79348254 -97625886 + (TTG)n Simple_repeat Simple_repeat 2 24 0 9421 238 16 13 chrX 79348254 79349241 -97624899 - L1PA16 LINE L1 -2666 3500 2517 4256 91 34 0 chrX 79349256 79349875 -97624265 + L1PBa LINE L1 2102 2741 -4122 5111 193 12 5 chrX 79349887 79351099 -97623041 + L1PBa LINE L1 2799 4019 -2843 657 241 78 5 chrX 79351090 79351281 -97622859 + L1PA16 LINE L1 5960 6164 -2 * 26 50 0 0 chrX 79351281 79351321 -97622819 + AT_rich Low_complexity Low_complexity 1 40 0 329 315 41 0 chrX 79351412 79351558 -97622582 - HAL1 LINE L1 -1242 1265 1114 2075 92 17 3 chrX 79352792 79353085 -97621055 + AluSx SINE Alu 1 297 -15 515 267 28 6 chrX 79354109 79354285 -97619855 + MER104 DNA MER2_type 1 180 0 21 36 0 0 chrX 79354513 79354541 -97619599 + AT_rich Low_complexity Low_complexity 1 28 0 182 33 67 0 chrX 79354907 79354937 -97619203 + T-rich Low_complexity Low_complexity 4 35 0 22301 181 16 21 chrX 79354938 79361301 -97612839 - L1PA10 LINE L1 -19 6464 1 315 319 70 32 chrX 79361863 79362020 -97612120 - MIR SINE MIR -28 234 72 1522 265 185 4 chrX 79362023 79362536 -97611604 + MLT2F LTR ERVL 1 606 -57 256 130 58 29 chrX 79362541 79362610 -97611530 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 203 373 13 0 chrX 79362818 79362893 -97611247 + MIR3 SINE MIR 85 160 -48 2503 118 6 3 chrX 79362899 79363262 -97610878 - THE1B LTR MaLR 0 364 1 4480 109 69 8 chrX 79363262 79363930 -97610210 - THE1B-int LTR MaLR 0 1580 872 2176 175 27 3 chrX 79364514 79364886 -97609254 - MER54A LTR ERVL -1 900 520 343 244 12 12 chrX 79364870 79364956 -97609184 - MER54A LTR ERVL -815 86 1 * 21 57 0 0 chrX 79366183 79366218 -97607922 + AT_rich Low_complexity Low_complexity 1 35 0 6958 50 0 4 chrX 79366422 79367409 -97606731 - L1PA6 LINE L1 0 6154 5154 186 341 24 12 chrX 79368384 79368469 -97605671 + L3b LINE CR1 1352 1437 -146 451 276 65 0 chrX 79368537 79368660 -97605480 - MIR SINE MIR -15 247 117 562 264 214 0 chrX 79368928 79369087 -97605053 + MIR SINE MIR 1 193 -69 188 236 42 69 chrX 79369128 79369200 -97604940 + MIR SINE MIR 193 262 0 8080 221 57 10 chrX 79369308 79371160 -97602980 - L1MB1 LINE L1 0 6168 4116 342 0 0 0 chrX 79371160 79371198 -97602942 + (TG)n Simple_repeat Simple_repeat 2 39 0 8080 221 57 10 chrX 79371198 79372302 -97601838 - L1MB1 LINE L1 -2052 4116 3065 2047 110 26 19 chrX 79373070 79373379 -97600761 + AluSq SINE Alu 1 311 -2 21 0 0 0 chrX 79374065 79374086 -97600054 + AT_rich Low_complexity Low_complexity 1 21 0 720 262 6 6 chrX 79374813 79374981 -97599159 + MER69 DNA AcHobo 401 568 -1958 * 1745 195 127 2 chrX 79374979 79375435 -97598705 + MER69 DNA AcHobo 2010 2522 -4 204 196 0 39 chrX 79375827 79375878 -97598262 + GA-rich Low_complexity Low_complexity 3 51 0 251 350 80 31 chrX 79376228 79376391 -97597749 - L3b LINE CR1 -110 1473 1303 256 186 34 0 chrX 79376726 79376785 -97597355 + A-rich Low_complexity Low_complexity 4 64 0 223 347 100 18 chrX 79377064 79377234 -97596906 + MIR SINE MIR 69 252 -10 1856 155 6 9 chrX 79377524 79377841 -97596299 - Tigger1 DNA MER2_type -25 2393 2078 4356 133 22 14 chrX 79377853 79378584 -97595556 - L1PB2 LINE L1 -3 6864 6128 2979 217 13 20 chrX 79378591 79379348 -97594792 - L1PB2 LINE L1 -1637 5225 4474 8638 170 44 12 chrX 79379357 79380607 -97593533 - L1PB2 LINE L1 -3737 3125 1916 2177 93 0 20 chrX 79380607 79380907 -97593233 - AluSg SINE Alu 0 310 17 8638 170 44 12 chrX 79380907 79383611 -97590529 - L1PB2 LINE L1 -4946 1916 1 11446 163 17 31 chrX 79383630 79383894 -97590246 - Tigger1 DNA MER2_type -327 2091 1825 189 74 0 0 chrX 79383894 79383921 -97590219 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 11446 163 17 31 chrX 79383921 79383940 -97590200 - Tigger1 DNA MER2_type -593 1825 1807 194 0 95 24 chrX 79383940 79383982 -97590158 + T-rich Low_complexity Low_complexity 1 45 0 9486 65 78 0 chrX 79383985 79385209 -97588931 - SVA Other Other -17 1369 50 228 35 0 0 chrX 79385209 79385238 -97588902 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 11446 163 17 31 chrX 79385238 79385593 -97588547 - Tigger1 DNA MER2_type -612 1806 1448 868 209 0 0 chrX 79385593 79385751 -97588389 - FRAM SINE Alu -6 160 3 11446 163 17 31 chrX 79385751 79386590 -97587550 - Tigger1 DNA MER2_type -970 1448 643 2332 50 0 0 chrX 79386590 79386870 -97587270 - AluY SINE Alu 0 311 32 11446 163 17 31 chrX 79386870 79387505 -97586635 - Tigger1 DNA MER2_type -1775 643 1 4589 180 32 17 chrX 79387508 79388451 -97585689 - Tigger3b DNA MER2_type 0 1231 275 486 204 65 0 chrX 79388453 79388546 -97585594 - Tigger3b DNA MER2_type -1132 99 1 1890 193 96 37 chrX 79389284 79389797 -97584343 + L1PA16 LINE L1 5624 6166 0 3620 231 23 19 chrX 79389799 79390794 -97583346 + L1P LINE L1 2956 3954 -2192 1239 220 51 20 chrX 79390796 79391091 -97583049 - MLT1C LTR MaLR -163 304 1 24 53 0 0 chrX 79391159 79391197 -97582943 + AT_rich Low_complexity Low_complexity 1 38 0 4519 303 65 30 chrX 79391350 79391441 -97582699 + L2 LINE L2 687 773 -2541 1882 143 51 40 chrX 79391441 79391812 -97582328 + THE1C LTR MaLR 1 375 0 4519 303 65 30 chrX 79391812 79391851 -97582289 + L2 LINE L2 773 809 -2505 1331 168 73 103 chrX 79391851 79392315 -97581825 - LTR7 LTR ERV1 0 450 1 4519 303 65 30 chrX 79392315 79393247 -97580893 + L2 LINE L2 809 1707 -1607 2286 152 39 20 chrX 79393247 79393689 -97580451 - LTR7 LTR ERV1 0 450 1 4519 303 65 30 chrX 79393689 79394514 -97579626 + L2 LINE L2 1707 2642 -672 249 264 0 0 chrX 79394614 79394667 -97579473 + L2 LINE L2 939 991 -2323 9516 214 12 16 chrX 79395834 79397525 -97576615 - L1PA15-16 LINE L1 -1861 4988 3307 2067 198 63 58 chrX 79397525 79398076 -97576064 + MLT2B3 LTR ERVL 1 554 0 9516 214 12 16 chrX 79398076 79398620 -97575520 - L1PA15-16 LINE L1 -3542 3307 2762 3200 103 16 0 chrX 79398631 79399077 -97575063 + MLT2A2 LTR ERVL 1 453 0 38046 95 4 6 chrX 79399077 79404213 -97569927 + HERVL-A2 LTR ERVL 1 5125 -529 399 103 0 0 chrX 79404213 79404281 -97569859 + MLT2A2 LTR ERVL 386 453 0 3187 188 8 8 chrX 79404287 79405210 -97568930 + L1PA12 LINE L1 2552 3481 -4103 307 349 28 0 chrX 79405226 79405335 -97568805 - Charlie1 DNA MER1_type -2643 118 7 206 151 27 55 chrX 79405597 79405670 -97568470 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 1271 94 6 0 chrX 79405671 79405842 -97568298 - L1PA15 LINE L1 -46 6119 5948 2822 60 52 86 chrX 79405846 79406349 -97567791 - LTR21A LTR ERV1 -19 486 1 4295 117 3 0 chrX 79406349 79406982 -97567158 - L1PA15 LINE L1 -218 5947 5313 1455 147 119 75 chrX 79407211 79407640 -97566500 - LTR7 LTR ERV1 -2 448 1 425 324 7 7 chrX 79407759 79407901 -97566239 - MIR SINE MIR -26 236 95 5806 213 31 54 chrX 79407971 79408464 -97565676 - L1 LINE L1 -1015 5131 4628 2492 149 24 14 chrX 79408464 79408887 -97565253 + MSTA LTR MaLR 1 427 -1 7836 205 34 9 chrX 79408889 79410497 -97563643 + MSTA-int LTR MaLR 2 1650 -1 2543 143 21 14 chrX 79410498 79410923 -97563217 + MSTA LTR MaLR 1 428 0 5806 213 31 54 chrX 79410923 79412183 -97561957 - L1 LINE L1 -1518 4628 3414 3933 214 49 18 chrX 79412189 79413300 -97560840 + L1MA9 LINE L1 5137 6282 -30 320 301 32 26 chrX 79413452 79413608 -97560532 + L1M4 LINE L1 2197 2353 -3793 2395 69 0 3 chrX 79414040 79414345 -97559795 - AluY SINE Alu -7 304 1 26 0 0 0 chrX 79415008 79415034 -97559106 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chrX 79415502 79415525 -97558615 + AT_rich Low_complexity Low_complexity 1 23 0 517 268 73 12 chrX 79416474 79416638 -97557502 - MER45A DNA AcHobo -3 175 2 1266 172 3 77 chrX 79417039 79417336 -97556804 - AluJb SINE Alu -5 307 33 26 30 0 0 chrX 79417515 79417548 -97556592 + AT_rich Low_complexity Low_complexity 1 33 0 234 270 14 27 chrX 79419047 79419121 -97555019 + GA-rich Low_complexity Low_complexity 1 73 0 350 312 37 28 chrX 79419324 79419539 -97554601 - L1MC4a LINE L1 -1778 6030 5814 449 271 23 8 chrX 79419540 79419673 -97554467 - L1ME3A LINE L1 -42 6128 5994 279 227 62 39 chrX 79420467 79420595 -97553545 - L1ME4a LINE L1 0 6121 5991 32 0 0 0 chrX 79420787 79420819 -97553321 + AT_rich Low_complexity Low_complexity 1 32 0 2131 79 40 0 chrX 79420822 79421100 -97553040 - AluY SINE Alu -22 289 1 448 323 62 6 chrX 79421235 79421653 -97552487 - L1MC4a LINE L1 -525 5639 5198 3850 266 55 45 chrX 79421667 79423618 -97550522 - L1MC4a LINE L1 0 7808 5837 1245 258 54 16 chrX 79423619 79424007 -97550133 - L1MD2 LINE L1 -10 6349 5947 1170 264 21 49 chrX 79424017 79424551 -97549589 - L1MC4a LINE L1 -2364 3782 3264 829 171 11 6 chrX 79424554 79424729 -97549411 + CT-rich Low_complexity Low_complexity 3 178 0 474 144 119 0 chrX 79424742 79424860 -97549280 - AluSg/x SINE Alu -2 307 176 1571 121 0 0 chrX 79424886 79425101 -97549039 - AluSq SINE Alu -94 219 5 1856 278 73 24 chrX 79425112 79425156 -97548984 - L1MC4a LINE L1 -2875 3271 3231 396 0 0 0 chrX 79425156 79425200 -97548940 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1657 172 0 41 chrX 79425200 79425490 -97548650 - AluJb SINE Alu -34 278 1 1856 278 73 24 chrX 79425490 79426433 -97547707 - L1MC4a LINE L1 -2914 3232 2235 430 284 57 5 chrX 79426419 79426613 -97547527 - L1M4 LINE L1 -1039 5107 4904 * 351 290 114 16 chrX 79426617 79426934 -97547206 - L1M4 LINE L1 -1088 5058 4711 392 242 58 31 chrX 79426984 79427207 -97546933 - L1M4 LINE L1 -1548 4598 4370 1471 187 137 57 chrX 79427331 79427732 -97546408 + MLT2B1 LTR ERVL 1 433 -87 481 305 92 39 chrX 79427844 79428290 -97545850 - L1M4 LINE L1 -1897 4249 3828 261 0 0 0 chrX 79428290 79428319 -97545821 + (TG)n Simple_repeat Simple_repeat 2 30 0 481 305 92 39 chrX 79428319 79428954 -97545186 - L1M4 LINE L1 -2318 3828 3111 24 32 0 0 chrX 79429079 79429110 -97545030 + AT_rich Low_complexity Low_complexity 1 31 0 400 259 56 0 chrX 79429113 79429221 -97544919 - L1MC4a LINE L1 -970 6838 6725 * 10626 203 51 105 chrX 79429205 79430427 -97543713 - L1P3 LINE L1 -2316 4145 2858 1864 150 64 9 chrX 79430427 79430754 -97543386 - THE1B LTR MaLR -19 345 1 10626 203 51 105 chrX 79430754 79433489 -97540651 - L1P3 LINE L1 -3603 2858 8 1436 115 96 0 chrX 79433568 79433777 -97540363 + AluSq SINE Alu 3 231 -82 24 32 0 0 chrX 79434087 79434118 -97540022 + AT_rich Low_complexity Low_complexity 1 31 0 282 299 41 0 chrX 79434326 79434423 -97539717 + Charlie7 DNA MER1_type 1 101 -2511 739 225 45 30 chrX 79434505 79434705 -97539435 + MER3 DNA MER1_type 2 204 -5 27 49 0 0 chrX 79435556 79435597 -97538543 + AT_rich Low_complexity Low_complexity 1 41 0 11500 223 51 25 chrX 79435786 79442235 -97531905 + L1MA5 LINE L1 1 7356 -6 2040 191 87 2 chrX 79442479 79442904 -97531236 - LOR1b LTR ERV1 0 461 1 596 124 0 0 chrX 79442914 79443003 -97531137 - LOR1b-int LTR ERV1 -2 8118 8030 1611 157 20 0 chrX 79443005 79443260 -97530880 - LOR1b-int LTR ERV1 -2060 6060 5801 * 9878 135 28 33 chrX 79443246 79445041 -97529099 - LOR1b-int LTR ERV1 -2592 5528 3743 8792 124 13 31 chrX 79445081 79446580 -97527560 - LOR1b-int LTR ERV1 -4287 3833 2363 1276 247 136 42 chrX 79446580 79447369 -97526771 + LTR28 LTR ERV1 1 993 -27 12547 98 7 6 chrX 79447372 79449203 -97524937 - L1P LINE L1 -2531 3615 1783 2857 47 0 50 chrX 79449222 79449606 -97524534 + L1PA7 LINE L1 5784 6148 -6 908 152 35 0 chrX 79449608 79449779 -97524361 - LOR1b-int LTR ERV1 -5869 2251 2075 * 3354 150 81 15 chrX 79449771 79450386 -97523754 - LOR1b-int LTR ERV1 -7262 858 203 650 132 88 37 chrX 79450378 79450514 -97523626 - LOR1b-int LTR ERV1 -7712 408 266 * 1857 204 69 14 chrX 79450517 79450954 -97523186 - LOR1b LTR ERV1 0 461 1 218 222 0 0 chrX 79452199 79452244 -97521896 + (TA)n Simple_repeat Simple_repeat 1 45 0 191 267 22 67 chrX 79453067 79453157 -97520983 + MIR3 SINE MIR 110 195 -13 23 33 0 0 chrX 79454352 79454382 -97519758 + AT_rich Low_complexity Low_complexity 1 30 0 278 276 38 9 chrX 79454610 79454715 -97519425 - MER103 DNA DNA -3 163 56 9195 32 0 1 chrX 79456139 79458026 -97516114 + L1PA3 LINE L1 4271 6153 -2 323 246 30 12 chrX 79458052 79458219 -97515921 + (TA)n Simple_repeat Simple_repeat 2 171 0 451 279 31 8 chrX 79459049 79459178 -97514962 - MIR SINE MIR -70 192 61 184 0 0 88 chrX 79459195 79459229 -97514911 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 186 344 133 0 chrX 79459371 79459461 -97514679 - MIR SINE MIR -8 254 153 12768 238 23 10 chrX 79459463 79464320 -97509820 - L1PA16 LINE L1 -6 7598 2676 312 98 78 0 chrX 79464351 79464402 -97509738 - MLT2A1 LTR ERVL 0 453 399 594 131 5 41 chrX 79464406 79464779 -97509361 + (TA)n Simple_repeat Simple_repeat 1 359 0 2882 103 0 5 chrX 79464787 79465193 -97508947 - MLT2A1 LTR ERVL -40 404 1 11046 87 8 1 chrX 79465230 79466688 -97507452 - HERVL-A1 LTR ERVL -76 5578 4110 4706 83 2 0 chrX 79466686 79467301 -97506839 - HERVL-A2 LTR ERVL -5038 616 1 * 2991 114 14 9 chrX 79467303 79467749 -97506391 - MLT2A2 LTR ERVL -5 448 1 2507 63 3 0 chrX 79467802 79468105 -97506035 - AluY SINE Alu -7 304 1 810 302 65 18 chrX 79468111 79468205 -97505935 - L1PA16 LINE L1 -4983 2598 2510 225 0 0 0 chrX 79468205 79468230 -97505910 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 810 302 65 18 chrX 79468230 79468532 -97505608 - L1PA16 LINE L1 -5071 2510 2183 1832 134 7 0 chrX 79468848 79469123 -97505017 - AluSx SINE Alu -35 277 1 718 344 35 29 chrX 79469444 79469895 -97504245 - L1PA16 LINE L1 -6332 1242 789 524 209 38 0 chrX 79470276 79470381 -97503759 - Tigger5 DNA MER2_type 0 2323 2215 1281 208 137 77 chrX 79470432 79470951 -97503189 - MLT2B3 LTR ERVL -4 550 1 771 311 72 43 chrX 79471141 79471611 -97502529 + MLT1H LTR MaLR 65 548 -1 198 0 0 0 chrX 79472018 79472040 -97502100 + (TC)n Simple_repeat Simple_repeat 1 22 0 414 0 0 0 chrX 79472041 79472087 -97502053 + (TG)n Simple_repeat Simple_repeat 2 47 0 2723 194 24 9 chrX 79472358 79472936 -97501204 - L1MA7 LINE L1 -355 5936 5350 * 4596 236 47 54 chrX 79472919 79474205 -97499935 + MLT1A1-int LTR MaLR 458 1735 0 1681 228 20 0 chrX 79474205 79474561 -97499579 + MLT1A1 LTR MaLR 1 363 -2 2111 151 32 3 chrX 79474563 79474933 -97499207 - L1M3 LINE L1 -399 5784 5404 7289 255 60 34 chrX 79474968 79475666 -97498474 - L1M3 LINE L1 -872 5274 4596 1518 220 31 11 chrX 79475666 79476020 -97498120 - MLT1A1 LTR MaLR 0 365 5 7289 255 60 34 chrX 79476020 79476249 -97497891 - L1M3 LINE L1 -1550 4596 4374 2292 88 0 0 chrX 79476249 79476545 -97497595 + AluSq SINE Alu 1 296 -17 7289 255 60 34 chrX 79476545 79476658 -97497482 - L1M3 LINE L1 -1772 4374 4265 2171 130 0 9 chrX 79476658 79476973 -97497167 - AluSx SINE Alu 0 312 1 7289 255 60 34 chrX 79476973 79478673 -97495467 - L1M3 LINE L1 -1881 4265 2461 305 254 45 18 chrX 79479344 79479454 -97494686 + L1MA9 LINE L1 6027 6139 -173 3219 174 63 30 chrX 79480024 79480866 -97493274 + pTR5 LTR ERV1 5 253 -461 1728 209 3 3 chrX 79480866 79481177 -97492963 + L1MA3 LINE L1 415 725 -6840 * 8680 185 65 15 chrX 79481175 79483414 -97490726 + L1MA3 LINE L1 4027 6623 -1101 221 56 0 28 chrX 79483414 79483450 -97490690 + (TAAAA)n Simple_repeat Simple_repeat 1 35 0 8680 185 65 15 chrX 79483450 79484383 -97489757 + L1MA3 LINE L1 6623 7509 -215 240 279 31 105 chrX 79484978 79485151 -97488989 - MER5A DNA MER1_type -14 164 2 424 259 103 87 chrX 79485218 79485403 -97488737 + MIR SINE MIR 50 237 -25 26 0 0 0 chrX 79485527 79485553 -97488587 + AT_rich Low_complexity Low_complexity 1 26 0 17836 195 20 33 chrX 79685806 79686170 -97287970 - L1 LINE L1 -2597 4968 4601 2093 140 0 0 chrX 79686170 79686462 -97287678 - AluSx SINE Alu -18 294 3 17836 195 20 33 chrX 79686462 79688211 -97285929 - L1 LINE L1 -2964 4601 2831 243 0 0 0 chrX 79688211 79688238 -97285902 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 17836 195 20 33 chrX 79688238 79688851 -97285289 - L1 LINE L1 -4734 2831 2212 2940 168 17 42 chrX 79688851 79689446 -97284694 - LTR22 LTR ERVK 0 580 1 17836 195 20 33 chrX 79689446 79689815 -97284325 - L1 LINE L1 -5353 2212 1840 2336 73 0 35 chrX 79689815 79690128 -97284012 - AluY SINE Alu -9 302 1 17836 195 20 33 chrX 79690128 79692042 -97282098 - L1 LINE L1 -5725 1840 22 8352 183 14 19 chrX 79692165 79693694 -97280446 - L1MA2 LINE L1 0 7723 6188 3454 190 16 77 chrX 79693694 79694725 -97279415 + LTR5 LTR ERVK 1 969 0 8352 183 14 19 chrX 79694725 79694812 -97279328 - L1MA2 LINE L1 -1535 6188 6102 227 31 31 0 chrX 79694812 79694844 -97279296 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 8352 183 14 19 chrX 79694844 79694950 -97279190 - L1MA2 LINE L1 -1621 6102 5997 2019 106 0 34 chrX 79694950 79695276 -97278864 - AluSg SINE Alu 0 316 1 8352 183 14 19 chrX 79695276 79696467 -97277673 - L1MA2 LINE L1 -1726 5997 4820 494 187 80 21 chrX 79696484 79696671 -97277469 - L1MA2 LINE L1 -2805 4760 4563 10436 169 137 5 chrX 79696679 79698842 -97275298 - L1MA2 LINE L1 -4287 3278 831 2145 148 11 16 chrX 79698842 79699206 -97274934 + THE1B LTR MaLR 1 362 -2 9674 128 34 37 chrX 79699212 79700793 -97273347 + THE1B-int LTR MaLR 6 1580 0 2287 142 11 0 chrX 79700793 79701153 -97272987 + THE1B LTR MaLR 1 364 0 3483 232 39 20 chrX 79701154 79701950 -97272190 - L1MA2 LINE L1 -6731 834 24 243 88 0 0 chrX 79701981 79702015 -97272125 + (T)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chrX 79702154 79702184 -97271956 + AT_rich Low_complexity Low_complexity 1 30 0 325 303 27 90 chrX 79702398 79702509 -97271631 + L1MDa LINE L1 34 130 -6410 2562 61 0 3 chrX 79702509 79702820 -97271320 + AluY SINE Alu 1 310 -1 325 303 27 90 chrX 79702820 79702896 -97271244 + L1MDa LINE L1 130 209 -6331 959 259 132 59 chrX 79703464 79704508 -97269632 + L1MDa LINE L1 882 2756 -3784 * 3866 196 37 1 chrX 79704505 79705313 -97268827 - L1P LINE L1 -1004 5142 4306 1907 94 27 20 chrX 79705302 79705599 -97268541 + L1PA13 LINE L1 5746 6044 -119 * 2001 181 28 14 chrX 79705599 79705958 -97268182 + THE1B LTR MaLR 1 364 0 10584 117 25 3 chrX 79705958 79707491 -97266649 + THE1B-int LTR MaLR 11 1580 0 2115 161 28 17 chrX 79707491 79707851 -97266289 + THE1B LTR MaLR 1 364 0 803 107 8 0 chrX 79707851 79707972 -97266168 + L1PA13 LINE L1 6040 6161 -2 3928 224 28 6 chrX 79707975 79709043 -97265097 + L1MDa LINE L1 2740 3831 -2709 * 4344 179 57 16 chrX 79709034 79710003 -97264137 + L1MA8 LINE L1 5277 6285 -6 628 294 58 10 chrX 79710006 79710299 -97263841 + L1ME1 LINE L1 1895 2201 -4339 6252 157 26 2 chrX 79710321 79711415 -97262725 + HSMAR2 DNA Mariner 180 1300 -2 3993 237 80 111 chrX 79711473 79712691 -97261449 + L1ME1 LINE L1 2415 3669 -2871 2113 123 0 0 chrX 79712691 79712983 -97261157 + AluSc SINE Alu 1 292 -17 3993 237 80 111 chrX 79712983 79713062 -97261078 + L1ME1 LINE L1 3669 3749 -2791 261 0 0 0 chrX 79713062 79713091 -97261049 + (CA)n Simple_repeat Simple_repeat 2 30 0 3993 237 80 111 chrX 79713091 79713106 -97261034 + L1ME1 LINE L1 3749 3763 -2777 817 254 6 0 chrX 79713106 79713283 -97260857 + FRAM SINE Alu 1 174 -2 3993 237 80 111 chrX 79713283 79715082 -97259058 + L1ME1 LINE L1 3763 5589 -951 11442 135 7 14 chrX 79715083 79715943 -97258197 + L1PA11 LINE L1 3412 4276 -1898 2486 80 0 0 chrX 79715943 79716254 -97257886 - AluY SINE Alu 0 311 1 11442 135 7 14 chrX 79716254 79717995 -97256145 + L1PA11 LINE L1 4276 5994 -180 545 125 0 0 chrX 79717996 79718084 -97256056 + L1PA11 LINE L1 6086 6173 -1 1945 260 38 86 chrX 79718084 79719088 -97255052 + L1ME1 LINE L1 5584 6541 -19 356 323 90 26 chrX 79719570 79719805 -97254335 + L1MEc LINE L1 815 1046 -5338 1450 153 16 0 chrX 79719923 79720171 -97253969 + L1PA16 LINE L1 5909 6160 -6 21 57 0 0 chrX 79720186 79720221 -97253919 + AT_rich Low_complexity Low_complexity 1 35 0 2192 236 44 6 chrX 79720594 79721098 -97253042 + Tigger7 DNA MER2_type 44 566 -1921 2003 295 89 13 chrX 79721143 79722785 -97251355 + L1M4 LINE L1 2758 4525 -1621 983 141 68 56 chrX 79722924 79723158 -97250982 - MLT1B LTR MaLR 0 390 154 745 158 38 38 chrX 79723169 79723352 -97250788 + L1ME2 LINE L1 5732 5914 -252 3878 124 57 81 chrX 79723395 79724199 -97249941 + LTR1 LTR ERV1 1 785 0 344 167 69 0 chrX 79724399 79724471 -97249669 + L1ME2 LINE L1 6077 6153 -11 889 251 44 24 chrX 79724554 79724805 -97249335 - MIR SINE MIR 0 262 7 315 228 13 0 chrX 79725536 79725615 -97248525 - MER116 DNA Mariner 0 80 1 5978 97 3 6 chrX 79725931 79727000 -97247140 - L1PA13 LINE L1 -3 6160 5075 337 169 0 0 chrX 79727000 79727059 -97247081 + L1M4 LINE L1 3901 3959 -2187 266 321 19 28 chrX 79728172 79728278 -97245862 - L3b LINE CR1 -87 1496 1392 1032 107 7 0 chrX 79728563 79728703 -97245437 + AluSq/x SINE Alu 1 141 -171 2092 89 7 18 chrX 79728704 79728984 -97245156 + AluSg SINE Alu 7 283 -27 2319 78 3 0 chrX 79729210 79729504 -97244636 - AluSg SINE Alu -15 295 1 4090 149 33 16 chrX 79730058 79730526 -97243614 + MER50 LTR ERV1 1 486 -248 2245 90 3 31 chrX 79730526 79730847 -97243293 + AluSx SINE Alu 1 312 0 4090 149 33 16 chrX 79730847 79731077 -97243063 + MER50 LTR ERV1 486 711 -23 556 341 45 0 chrX 79734234 79734413 -97239727 + MIR SINE MIR 76 262 0 346 357 51 0 chrX 79735892 79736049 -97238091 - MIR SINE MIR 0 262 98 249 57 0 0 chrX 79736749 79736784 -97237356 + (CA)n Simple_repeat Simple_repeat 2 36 0 2417 222 50 10 chrX 79736897 79737416 -97236724 - LTR9B LTR ERV1 0 644 105 525 302 108 13 chrX 79737672 79737904 -97236236 - MIR SINE MIR -8 254 1 306 273 157 0 chrX 79737981 79738102 -97236038 - MIR SINE MIR -3 259 120 2786 0 0 0 chrX 79738437 79738739 -97235401 - AluYa5 SINE Alu -9 302 1 785 251 16 5 chrX 79738902 79739089 -97235051 + MER5A DNA MER1_type 1 189 0 24 53 0 0 chrX 79739273 79739311 -97234829 + AT_rich Low_complexity Low_complexity 1 38 0 37 23 0 0 chrX 79739679 79739723 -97234417 + AT_rich Low_complexity Low_complexity 1 44 0 5679 61 4 7 chrX 79739801 79740553 -97233587 - L1PA7 LINE L1 0 6154 5405 5350 77 3 1 chrX 79742385 79743096 -97231044 - L1PA7 LINE L1 -4 6150 5439 521 155 58 57 chrX 79743226 79743409 -97230731 + L1MC/D LINE L1 5338 5518 -724 2989 257 65 57 chrX 79743564 79746713 -97227427 + L1MD3 LINE L1 3998 7413 -582 501 240 16 24 chrX 79746713 79746838 -97227302 + MLT1F1 LTR MaLR 2 125 -442 2989 257 65 57 chrX 79746838 79747111 -97227029 + L1MD3 LINE L1 7413 7682 -313 2067 123 0 0 chrX 79747273 79747592 -97226548 + AluSx SINE Alu 1 319 0 73 23 0 0 chrX 79747682 79747769 -97226371 + AT_rich Low_complexity Low_complexity 1 87 0 39 22 0 0 chrX 79749327 79749373 -97224767 + AT_rich Low_complexity Low_complexity 1 46 0 268 293 54 42 chrX 79749616 79749783 -97224357 + MIR SINE MIR 78 246 -16 408 208 40 0 chrX 79749793 79749894 -97224246 - Ricksha_b DNA DNA -8 1646 1542 18286 182 36 20 chrX 79749914 79753661 -97220479 + L1MA2 LINE L1 18 3833 -3732 6868 148 15 5 chrX 79753665 79755687 -97218453 + L1MA2 LINE L1 5684 7723 0 6133 163 45 3 chrX 79755757 79756835 -97217305 - Ricksha_b DNA DNA -131 1123 1 254 283 100 0 chrX 79757116 79757176 -97216964 + MIR3 SINE MIR 91 156 -52 27 0 0 0 chrX 79758445 79758472 -97215668 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chrX 79759337 79759365 -97214775 + (A)n Simple_repeat Simple_repeat 1 28 0 691 244 67 114 chrX 79759852 79760421 -97213719 + MLT1F LTR MaLR 1 542 0 777 124 8 0 chrX 79761308 79761437 -97212703 - L1MA5 LINE L1 -11 6289 6160 1115 158 10 0 chrX 79761638 79761834 -97212306 - L1MA4 LINE L1 -152 6148 5951 16837 171 29 14 chrX 79761843 79762967 -97211173 - L1PB1 LINE L1 -7 7165 6059 2144 112 0 3 chrX 79762967 79763101 -97211039 + AluSx SINE Alu 1 134 -178 741 23 0 0 chrX 79763101 79763188 -97210952 + (GAAA)n Simple_repeat Simple_repeat 2 88 0 2144 112 0 3 chrX 79763188 79763356 -97210784 + AluSx SINE Alu 134 302 -10 16837 171 29 14 chrX 79763356 79764005 -97210135 - L1PB1 LINE L1 -1113 6059 5421 189 0 0 0 chrX 79764005 79764026 -97210114 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 16837 171 29 14 chrX 79764026 79769004 -97205136 - L1PB1 LINE L1 -1751 5421 308 264 59 0 0 chrX 79769173 79769207 -97204933 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 7207 155 23 35 chrX 79769970 79770259 -97203881 - L1MA3 LINE L1 -2 6303 6012 189 0 0 0 chrX 79770259 79770280 -97203860 + (CCCCCA)n Simple_repeat Simple_repeat 3 23 0 7207 155 23 35 chrX 79770280 79772529 -97201611 - L1MA3 LINE L1 -293 6012 3797 821 201 22 6 chrX 79772628 79772807 -97201333 + L1PBa LINE L1 419 600 -6263 2261 236 74 21 chrX 79772807 79773601 -97200539 - L1M4c LINE L1 -4520 1793 866 2248 70 3 7 chrX 79773601 79773899 -97200241 - AluY SINE Alu -14 297 1 2261 236 74 21 chrX 79773899 79773946 -97200194 - L1M4c LINE L1 -5447 866 823 368 286 16 8 chrX 79774517 79774643 -97199497 - L1PB1 LINE L1 -7041 127 1 23 0 0 0 chrX 79775548 79775571 -97198569 + AT_rich Low_complexity Low_complexity 1 23 0 349 320 26 33 chrX 79775793 79775946 -97198194 + MER5A DNA MER1_type 9 160 -29 5773 149 28 26 chrX 79776928 79777795 -97196345 - L1PB1 LINE L1 0 6151 5269 3238 45 2 2 chrX 79777795 79778197 -97195943 - L1PA7 LINE L1 0 6154 5753 5773 149 28 26 chrX 79778197 79778963 -97195177 - L1PB1 LINE L1 -882 5269 4506 214 143 36 54 chrX 79779117 79779173 -97194967 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1339 284 143 2 chrX 79779221 79779697 -97194443 + MLT1E LTR MaLR 1 543 -50 27 29 0 0 chrX 79780541 79780575 -97193565 + AT_rich Low_complexity Low_complexity 1 34 0 2186 156 53 11 chrX 79780862 79781240 -97192900 + MLT2D LTR ERVL 1 394 -20 333 68 0 0 chrX 79781270 79781314 -97192826 + (CA)n Simple_repeat Simple_repeat 2 45 0 1659 275 23 33 chrX 79781345 79781916 -97192224 + ERVL-D LTR ERVL 4 568 -5196 1223 46 0 0 chrX 79781919 79782070 -97192070 - L1P LINE L1 -4212 1934 1784 1060 228 0 5 chrX 79782112 79782327 -97191813 + ERVL-D LTR ERVL 758 971 -4793 420 314 91 30 chrX 79782538 79782693 -97191447 + L2 LINE L2 2147 2291 -1023 2127 125 3 10 chrX 79782693 79783005 -97191135 - AluSx SINE Alu 0 312 3 420 314 91 30 chrX 79783005 79783160 -97190980 + L2 LINE L2 2291 2463 -851 517 376 53 42 chrX 79783371 79783632 -97190508 + L2 LINE L2 2891 3159 -113 452 123 0 12 chrX 79783632 79783713 -97190427 + MADE1 DNA Mariner 1 80 0 517 376 53 42 chrX 79783713 79783829 -97190311 + L2 LINE L2 3159 3272 0 183 162 0 0 chrX 79783833 79783870 -97190270 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 228 163 0 0 chrX 79784451 79784494 -97189646 + (TA)n Simple_repeat Simple_repeat 2 44 0 5719 234 26 8 chrX 79784636 79786203 -97187937 - L1PB1 LINE L1 -1649 4497 2903 222 91 0 0 chrX 79786211 79786244 -97187896 + (TG)n Simple_repeat Simple_repeat 2 34 0 1991 244 18 3 chrX 79786250 79786829 -97187311 - L1PB1 LINE L1 -3775 2371 1785 495 248 0 0 chrX 79786823 79786936 -97187204 + L1PA16 LINE L1 6023 6135 -31 * 965 111 0 7 chrX 79786934 79787087 -97187053 - L1PA15-16 LINE L1 -4656 2193 2042 408 291 51 39 chrX 79787085 79787418 -97186722 - L1M4 LINE L1 -1243 4903 4567 * 400 313 10 5 chrX 79787439 79787634 -97186506 - L1MC4 LINE L1 -156 7886 7691 235 327 31 9 chrX 79787740 79787963 -97186177 - L1M4 LINE L1 -1602 4544 4317 6469 173 28 6 chrX 79788006 79790026 -97184114 - L1PA13 LINE L1 -19 6144 4068 2149 225 56 51 chrX 79790031 79790865 -97183275 - L1MD2 LINE L1 -381 5978 5130 34 55 0 0 chrX 79790865 79790920 -97183220 + AT_rich Low_complexity Low_complexity 1 55 0 341 305 32 7 chrX 79790973 79791127 -97183013 - L1MD2 LINE L1 -1089 5057 4900 554 238 41 0 chrX 79791333 79791455 -97182685 - AluJb SINE Alu -185 127 1 202 326 20 14 chrX 79791886 79792033 -97182107 + (TATATG)n Simple_repeat Simple_repeat 4 151 0 265 100 25 0 chrX 79792033 79792073 -97182067 + MER83B-int LTR ERV1 4246 4286 -594 263 132 19 19 chrX 79792073 79792126 -97182014 - L1MA3 LINE L1 -44 6261 6209 10082 182 21 7 chrX 79792233 79795406 -97178734 - L1MA3 LINE L1 -2 7722 4503 1468 149 36 7 chrX 79795391 79795667 -97178473 - L1MA3 LINE L1 -4644 2921 2638 * 1297 321 23 8 chrX 79796285 79796758 -97177382 - HERVL40 LTR ERVL -886 4644 4165 3391 307 33 33 chrX 79797021 79798344 -97175796 - HERVL40 LTR ERVL -1502 4028 2706 709 368 56 16 chrX 79798363 79799095 -97175045 + HERVL LTR ERVL 3735 4498 -990 606 319 34 31 chrX 79799304 79799630 -97174510 + HERVL LTR ERVL 4752 5078 -576 4456 154 13 89 chrX 79800706 79801621 -97172519 - LTR27-int LTR ERV1 -1805 5613 4784 2589 58 0 0 chrX 79801621 79801930 -97172210 + AluY SINE Alu 1 309 -2 4456 154 13 89 chrX 79801930 79802044 -97172096 - LTR27-int LTR ERV1 -2634 4784 4663 4034 138 36 105 chrX 79802054 79802979 -97171161 - LTR27-int LTR ERV1 -3572 1645 785 1040 241 57 53 chrX 79803050 79803659 -97170481 - LTR27-int LTR ERV1 -2507 601 2 2498 174 37 17 chrX 79803659 79804179 -97169961 - LTR27 LTR ERV1 0 501 3 1469 138 69 0 chrX 79805195 79805484 -97168656 - L1MA2 LINE L1 0 6304 5996 697 232 21 103 chrX 79805589 79805822 -97168318 - MER58A DNA MER1_type -6 218 5 246 250 14 0 chrX 79806095 79806167 -97167973 - L1MA6 LINE L1 -1 6299 6227 32 57 0 0 chrX 79806291 79806344 -97167796 + AT_rich Low_complexity Low_complexity 1 53 0 369 258 0 34 chrX 79807047 79807136 -97167004 + MLT1F1 LTR MaLR 35 120 -447 529 275 60 16 chrX 79807141 79807323 -97166817 + L1MD3 LINE L1 7404 7593 -402 25 31 0 0 chrX 79807323 79807355 -97166785 + AT_rich Low_complexity Low_complexity 1 32 0 354 264 155 8 chrX 79807856 79807985 -97166155 - L2 LINE L2 -4 3309 3162 2326 83 0 3 chrX 79808087 79808387 -97165753 - AluSq SINE Alu -14 299 1 623 182 61 0 chrX 79808828 79808960 -97165180 + MLT1B LTR MaLR 1 140 -250 277 290 74 37 chrX 79808960 79809284 -97164856 - L1MCb LINE L1 -4802 1943 1608 225 204 0 0 chrX 79809294 79809338 -97164802 + L1MC4 LINE L1 6660 6703 -1339 * 230 241 108 0 chrX 79809318 79809401 -97164739 - L1MC4 LINE L1 -1339 6703 6612 * 444 259 68 50 chrX 79809396 79809855 -97164285 - L1MCb LINE L1 -4849 1196 907 12489 195 63 12 chrX 79809962 79813843 -97160297 + L1M1 LINE L1 1113 5211 -2354 2249 241 38 27 chrX 79813855 79814228 -97159912 + L1M3 LINE L1 4741 5127 -2438 2434 64 6 16 chrX 79814228 79814540 -97159600 - AluSg SINE Alu -1 309 1 2249 241 38 27 chrX 79814540 79814871 -97159269 + L1M3 LINE L1 5127 5453 -2112 6537 174 28 11 chrX 79814881 79817192 -97156948 - L1PB3 LINE L1 -2 6152 3805 2319 260 8 18 chrX 79817204 79817923 -97156217 + L1M3 LINE L1 5442 6153 -1412 29500 108 7 17 chrX 79817923 79821653 -97152487 - L1PA7 LINE L1 -1 6468 2793 248 0 31 0 chrX 79821653 79821685 -97152455 + (TA)n Simple_repeat Simple_repeat 2 34 0 29500 108 7 17 chrX 79821685 79823696 -97150444 - L1PA7 LINE L1 -3676 2793 763 1530 226 70 24 chrX 79823705 79823741 -97150399 + L1M3 LINE L1 6146 6179 -1420 2153 131 0 6 chrX 79823741 79824055 -97150085 + AluSx SINE Alu 1 312 0 1530 226 70 24 chrX 79824055 79824803 -97149337 + L1M3 LINE L1 6179 6970 -629 14641 194 53 3 chrX 79824803 79829145 -97144995 + L1M1 LINE L1 697 5259 -2306 10603 207 85 10 chrX 79829144 79829814 -97144326 - L1M1 LINE L1 -5096 2469 1851 * 258 32 0 0 chrX 79829814 79829845 -97144295 + (TC)n Simple_repeat Simple_repeat 2 32 0 10603 207 85 10 chrX 79829845 79831460 -97142680 - L1M1 LINE L1 -5714 1851 12 183 42 0 0 chrX 79831680 79831704 -97142436 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2215 118 21 0 chrX 79831704 79832043 -97142097 + L1PA11 LINE L1 5829 6174 0 445 338 25 15 chrX 79832152 79832353 -97141787 - LTR16A LTR ERVL -223 227 25 410 372 30 66 chrX 79832416 79832779 -97141361 - L1MEd LINE L1 -5555 564 215 545 248 0 0 chrX 79833584 79833701 -97140439 - FLAM_A SINE Alu -13 120 4 34 65 0 0 chrX 79833818 79833880 -97140260 + AT_rich Low_complexity Low_complexity 1 62 0 24 0 0 0 chrX 79833904 79833928 -97140212 + AT_rich Low_complexity Low_complexity 1 24 0 1920 64 4 0 chrX 79834168 79834402 -97139738 - AluY SINE Alu -17 294 60 283 349 58 48 chrX 79834746 79835076 -97139064 + L2 LINE L2 2313 2645 -669 3232 205 45 11 chrX 79835159 79835911 -97138229 - L1MB7 LINE L1 0 6184 5407 1933 179 33 34 chrX 79837593 79838146 -97135994 - MLT2A2 LTR ERVL 0 554 4 297 353 116 17 chrX 79838319 79838492 -97135648 + MIR3 SINE MIR 16 205 -3 34 24 0 0 chrX 79838651 79838692 -97135448 + AT_rich Low_complexity Low_complexity 1 41 0 296 325 32 16 chrX 79838805 79838928 -97135212 + MLT1I LTR MaLR 19 143 -266 562 219 17 17 chrX 79839258 79839377 -97134763 - L2 LINE L2 -15 3298 3180 1242 293 44 30 chrX 79839384 79839886 -97134254 + LTR33 LTR ERVL 11 519 -2 279 0 0 0 chrX 79839890 79839921 -97134219 + (CA)n Simple_repeat Simple_repeat 2 32 0 695 331 100 3 chrX 79839921 79840211 -97133929 - L2 LINE L2 -160 3153 2836 640 330 124 21 chrX 79840207 79840537 -97133603 - L2 LINE L2 -584 2730 2367 * 1253 292 66 25 chrX 79840624 79841130 -97133010 + MLT1G LTR MaLR 1 589 -1 234 247 126 29 chrX 79841362 79841536 -97132604 + L1ME3 LINE L1 2114 2304 -4092 216 0 0 0 chrX 79841565 79841589 -97132551 + (T)n Simple_repeat Simple_repeat 1 24 0 217 258 8 45 chrX 79841603 79841735 -97132405 + A-rich Low_complexity Low_complexity 1 127 0 314 272 0 0 chrX 79841760 79841841 -97132299 + L1ME3 LINE L1 2539 2619 -3596 1436 296 45 61 chrX 79841858 79842192 -97131948 + L1ME3 LINE L1 3866 4204 -2011 2166 108 0 0 chrX 79842192 79842517 -97131623 + AluSg SINE Alu 1 325 0 1436 296 45 61 chrX 79842517 79843441 -97130699 + L1ME3 LINE L1 4204 5080 -1135 8101 104 5 1 chrX 79843448 79844633 -97129507 - L1PA7 LINE L1 -3537 2609 1420 18509 101 11 2 chrX 79844640 79847492 -97126648 + L1PA7 LINE L1 2627 5501 -653 2081 60 0 0 chrX 79847470 79847735 -97126405 + L1PA5 LINE L1 5888 6152 -2 * 5283 57 3 5 chrX 79847739 79848412 -97125728 + L1PA7 LINE L1 5476 6147 -7 717 286 125 23 chrX 79848515 79848824 -97125316 + L1ME3 LINE L1 5191 5467 -764 1704 168 14 12 chrX 79848824 79849170 -97124970 + L1MA4 LINE L1 5954 6300 0 717 286 125 23 chrX 79849170 79849554 -97124586 + L1ME3 LINE L1 5467 5963 -268 1702 151 154 3 chrX 79849569 79849887 -97124253 - MER47A DNA MER2_type 0 366 1 317 329 19 6 chrX 79850046 79850207 -97123933 + L1ME3 LINE L1 6066 6228 -3 386 358 68 5 chrX 79850362 79850552 -97123588 + MER20 DNA MER1_type 1 202 -17 414 39 0 0 chrX 79851759 79851811 -97122329 + (GA)n Simple_repeat Simple_repeat 1 52 0 252 342 110 29 chrX 79851908 79852180 -97121960 - L2 LINE L2 -1156 2158 1865 343 299 21 21 chrX 79852199 79852296 -97121844 + L2 LINE L2 3171 3267 -5 183 262 0 0 chrX 79852780 79852822 -97121318 - MIR SINE MIR -108 154 113 287 333 89 22 chrX 79853336 79853471 -97120669 - L2 LINE L2 -5 3308 3165 466 281 106 0 chrX 79853986 79854146 -97119994 - MLT1J LTR MaLR -279 232 56 1017 176 10 15 chrX 79854379 79854578 -97119562 + L1PBa LINE L1 3 200 -6663 6365 117 113 2 chrX 79854578 79856181 -97117959 + L1PBa LINE L1 634 2505 -4358 280 151 19 19 chrX 79856241 79856294 -97117846 + MER4A LTR ERV1 261 313 -351 26035 34 2 0 chrX 79856330 79859503 -97114637 - L1P LINE L1 -1340 4806 1629 6460 36 0 0 chrX 79859503 79860270 -97113870 + L1PA3 LINE L1 5388 6154 -1 1524 153 0 75 chrX 79860276 79860571 -97113569 + MER4A LTR ERV1 392 664 0 8157 218 12 11 chrX 79860574 79862057 -97112083 + L1PBa LINE L1 2554 4035 -2827 2085 216 33 69 chrX 79862057 79862692 -97111448 - LTR9 LTR ERV1 0 612 1 8157 218 12 11 chrX 79862692 79863366 -97110774 + L1PBa LINE L1 4035 4707 -2155 3456 118 4 2 chrX 79863397 79863922 -97110218 + L1PB1 LINE L1 5626 6151 0 1088 171 45 42 chrX 79863925 79864212 -97109928 + MER49 LTR ERV1 3 290 -633 629 152 10 0 chrX 79864197 79864296 -97109844 + MER49 LTR ERV1 616 715 -208 * 883 213 129 15 chrX 79864304 79864506 -97109634 + MER41D-int LTR ERV1 4604 4828 -1848 2396 264 20 15 chrX 79864810 79865459 -97108681 + MER41D-int LTR ERV1 5945 6596 -80 273 175 88 62 chrX 79865548 79865628 -97108512 + MER41D-int LTR ERV1 5858 5939 -7 2339 221 58 8 chrX 79865632 79866162 -97107978 + MER41D LTR ERV1 1 557 0 2343 65 10 0 chrX 79866780 79867072 -97107068 + AluY SINE Alu 2 296 -15 231 114 0 0 chrX 79867674 79867718 -97106422 + (A)n Simple_repeat Simple_repeat 1 44 0 3952 158 47 3 chrX 79868982 79869750 -97104390 - L1MA5A LINE L1 -3 6294 5493 8257 114 6 3 chrX 79869750 79870911 -97103229 + HERVL LTR ERVL 3327 4491 -1163 5962 181 24 14 chrX 79870911 79872168 -97101972 + L1MA2 LINE L1 3501 4770 -1376 986 136 0 0 chrX 79872168 79872339 -97101801 + AluSg/x SINE Alu 135 305 0 6053 127 17 14 chrX 79872339 79873324 -97100816 + L1MA2 LINE L1 5317 6304 0 333 68 34 0 chrX 79873568 79873627 -97100513 + L1MA7 LINE L1 6231 6291 0 22 0 0 0 chrX 79874549 79874571 -97099569 + AT_rich Low_complexity Low_complexity 1 22 0 193 226 113 32 chrX 79874797 79874859 -97099281 + MIR SINE MIR 44 110 -152 24 0 0 0 chrX 79874904 79874928 -97099212 + AT_rich Low_complexity Low_complexity 1 24 0 9055 223 37 15 chrX 79874949 79878493 -97095647 - L1PA16 LINE L1 -4 7600 3954 913 317 60 30 chrX 79878501 79878971 -97095169 - L1PA16 LINE L1 -7097 484 1 425 254 71 22 chrX 79878975 79879243 -97094897 - L1MC5 LINE L1 -209 7752 7472 303 28 0 0 chrX 79879418 79879454 -97094686 + (CA)n Simple_repeat Simple_repeat 1 36 0 432 252 28 75 chrX 79879530 79879744 -97094396 - L1MC5 LINE L1 -852 7109 6906 410 258 22 32 chrX 79879766 79879903 -97094237 - L1MC5 LINE L1 -908 6900 6766 21 36 0 0 chrX 79880108 79880136 -97094004 + AT_rich Low_complexity Low_complexity 1 28 0 681 282 15 58 chrX 79880808 79881067 -97093073 + MIR SINE MIR 15 262 0 468 226 0 0 chrX 79881097 79881181 -97092959 + AluJ/FLAM SINE Alu 1 84 -228 353 338 32 32 chrX 79882044 79882260 -97091880 - MIR SINE MIR -7 255 40 265 224 141 12 chrX 79883739 79883824 -97090316 + MIR SINE MIR 96 191 -71 24 53 0 0 chrX 79884074 79884112 -97090028 + AT_rich Low_complexity Low_complexity 1 38 0 435 255 25 0 chrX 79884116 79884273 -97089867 + Zaphod DNA AcHobo 890 1050 -2981 8733 250 49 17 chrX 79884287 79886804 -97087336 + L1PA15 LINE L1 1 2614 -4183 * 10602 233 16 3 chrX 79886790 79889446 -97084694 + L1PA15 LINE L1 3313 6001 -796 276 110 0 171 chrX 79889449 79889531 -97084609 - L1MA9 LINE L1 0 6312 6245 5992 111 28 10 chrX 79889532 79891203 -97082937 - L1PA11 LINE L1 0 6174 4495 5062 134 8 6 chrX 79891203 79892028 -97082112 + L1PA15 LINE L1 5988 6814 -2 3522 130 38 13 chrX 79892109 79892739 -97081401 + L1MA3 LINE L1 5653 6298 -7 518 183 70 14 chrX 79892813 79892955 -97081185 + L1MB8 LINE L1 6029 6178 0 299 292 0 0 chrX 79893199 79893271 -97080869 + MIR3 SINE MIR 112 183 -25 2375 185 37 37 chrX 79893843 79893986 -97080154 + MER34 LTR ERV1 1 143 -399 2352 200 12 6 chrX 79893986 79894495 -97079645 - L1PB4 LINE L1 -2 6154 5643 2375 185 37 37 chrX 79894495 79894887 -97079253 + MER34 LTR ERV1 142 536 -6 811 158 0 15 chrX 79895769 79895902 -97078238 - FLAM_C SINE Alu 0 133 3 3413 144 55 0 chrX 79895930 79896528 -97077612 - L1MA4 LINE L1 -9 6291 5661 1986 127 21 78 chrX 79897464 79897850 -97076290 - THE1B LTR MaLR 0 364 1 10582 105 42 1 chrX 79897850 79899369 -97074771 - THE1B-int LTR MaLR 0 1580 1 978 116 73 30 chrX 79899369 79899533 -97074607 - THE1B LTR MaLR 0 364 194 1276 159 7 67 chrX 79899544 79899814 -97074326 - AluSx SINE Alu -2 310 57 3755 56 4 65 chrX 79899819 79899950 -97074190 - THE1-int LTR MaLR -1077 503 365 1959 155 0 17 chrX 79899950 79900246 -97073894 - AluSx SINE Alu -21 291 1 3755 56 4 65 chrX 79900246 79900650 -97073490 - THE1-int LTR MaLR -1215 365 1 2179 139 19 25 chrX 79900650 79901016 -97073124 - THE1B LTR MaLR 0 364 1 28 61 0 0 chrX 79901065 79901114 -97073026 + AT_rich Low_complexity Low_complexity 1 49 0 2320 136 5 19 chrX 79901621 79901989 -97072151 - THE1B LTR MaLR 0 364 2 3696 145 57 2 chrX 79902389 79903022 -97071118 - L1PA16 LINE L1 -181 5985 5318 1865 144 47 32 chrX 79903029 79903160 -97070980 - L1PA16 LINE L1 -8 6155 6027 1933 184 6 8 chrX 79903160 79903514 -97070626 + THE1A LTR MaLR 1 353 -2 11483 106 3 1 chrX 79903516 79905092 -97069048 + THE1A-int LTR MaLR 1 1580 0 2774 76 3 0 chrX 79905092 79905446 -97068694 + THE1A LTR MaLR 1 355 0 1865 144 47 32 chrX 79905446 79905715 -97068425 - L1PA16 LINE L1 -135 6028 5716 2636 42 0 6 chrX 79906440 79906751 -97067389 + AluY SINE Alu 1 309 -2 645 178 16 0 chrX 79907606 79907735 -97066405 + L1MB2 LINE L1 6034 6164 -7 216 171 71 0 chrX 79907738 79907808 -97066332 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 29 47 0 0 chrX 79907929 79907972 -97066168 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chrX 79908148 79908181 -97065959 + AT_rich Low_complexity Low_complexity 1 33 0 1594 120 34 72 chrX 79908390 79908681 -97065459 - MER50 LTR ERV1 0 734 455 1025 176 30 52 chrX 79908679 79908912 -97065228 - MER50 LTR ERV1 -505 229 2 * 1371 111 27 31 chrX 79908913 79909138 -97065002 - MER50-int LTR ERV1 -8 7197 6974 * 3531 146 25 19 chrX 79909120 79909828 -97064312 - MER50-int LTR ERV1 -6430 775 1 1438 179 25 7 chrX 79909913 79910187 -97063953 - MER50 LTR ERV1 -23 711 433 1257 149 17 50 chrX 79910176 79910417 -97063723 - MER50 LTR ERV1 -501 233 1 * 191 186 40 16 chrX 79912462 79912586 -97061554 + (TA)n Simple_repeat Simple_repeat 2 128 0 1439 94 10 5 chrX 79914374 79914576 -97059564 - L1M1 LINE L1 -543 5759 5557 3221 83 42 43 chrX 79914665 79915025 -97059115 + L1MA1 LINE L1 5770 6130 -172 1900 117 7 29 chrX 79915025 79915332 -97058808 + AluSx SINE Alu 1 300 -12 3221 83 42 43 chrX 79915332 79915500 -97058640 + L1MA1 LINE L1 6130 6297 -5 2572 291 60 37 chrX 79915606 79916962 -97057178 - HAL1 LINE L1 -758 1749 362 26 19 0 58 chrX 79916963 79917015 -97057125 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chrX 79917164 79917186 -97056954 + AT_rich Low_complexity Low_complexity 1 22 0 2712 145 9 5 chrX 79917186 79917633 -97056507 - L1PA15 LINE L1 -3 6162 5714 588 278 54 36 chrX 79917640 79917917 -97056223 - HAL1 LINE L1 -2153 354 73 880 257 100 10 chrX 79918520 79918929 -97055211 - L1ME1 LINE L1 0 6166 5721 577 214 115 25 chrX 79918916 79919298 -97054842 - L1ME1 LINE L1 -683 5481 5072 * 1529 271 11 22 chrX 79919322 79919780 -97054360 - MLT1D LTR MaLR -32 473 21 3833 255 94 25 chrX 79919802 79920168 -97053972 - L1ME1 LINE L1 -1063 5083 4744 345 224 0 0 chrX 79920168 79920253 -97053887 - L1MB8 LINE L1 -1 6177 6093 3833 255 94 25 chrX 79920253 79920530 -97053610 - L1ME1 LINE L1 -1402 4744 4487 3879 162 11 1 chrX 79920530 79921191 -97052949 - L1PA16 LINE L1 -9 6157 5491 3833 255 94 25 chrX 79921191 79922235 -97051905 - L1ME1 LINE L1 -1659 4487 3279 10131 139 30 8 chrX 79922308 79924044 -97050096 + L1PB1 LINE L1 846 2619 -4244 411 208 108 8 chrX 79924156 79924286 -97049854 + LTR25 LTR ERV1 221 363 -431 939 160 23 6 chrX 79924446 79924621 -97049519 + MER61E LTR ERV1 341 518 -51 12850 196 16 22 chrX 79924656 79924827 -97049313 + L1PB1 LINE L1 2618 2788 -4079 2312 68 0 3 chrX 79924827 79925119 -97049021 - AluY SINE Alu -20 291 1 12850 196 16 22 chrX 79925119 79925391 -97048749 + L1PB1 LINE L1 2788 3060 -3807 2519 58 3 10 chrX 79925391 79925702 -97048438 + AluY SINE Alu 2 310 -1 12850 196 16 22 chrX 79925702 79929081 -97045059 + L1PB1 LINE L1 3060 6489 -378 1032 156 0 0 chrX 79929081 79929261 -97044879 + (TA)n Simple_repeat Simple_repeat 1 180 0 12850 196 16 22 chrX 79929261 79929638 -97044502 + L1PB1 LINE L1 6489 6867 0 21 36 0 0 chrX 79929675 79929703 -97044437 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chrX 79929866 79929895 -97044245 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 79929993 79930014 -97044126 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 79930524 79930555 -97043585 + AT_rich Low_complexity Low_complexity 1 31 0 181 338 26 0 chrX 79931739 79931816 -97042324 + MIR SINE MIR 157 235 -27 3351 97 50 30 chrX 79931897 79932436 -97041704 + L1PA10 LINE L1 5615 6164 -4 205 364 0 23 chrX 79932492 79932580 -97041560 - L2 LINE L2 -1 3271 3186 1598 182 0 39 chrX 79933265 79933572 -97040568 + AluJo SINE Alu 1 295 -17 7602 132 44 21 chrX 79934045 79934241 -97039899 + HSMAR1 DNA Mariner 3 193 -1094 2006 129 17 0 chrX 79934241 79934535 -97039605 + AluSq SINE Alu 1 299 -14 2023 114 10 29 chrX 79934535 79934841 -97039299 + AluSx SINE Alu 1 300 -12 7602 132 44 21 chrX 79934841 79934957 -97039183 + HSMAR1 DNA Mariner 193 305 -982 2217 99 0 7 chrX 79934957 79935260 -97038880 + AluSx SINE Alu 1 301 -11 7602 132 44 21 chrX 79935260 79936200 -97037940 + HSMAR1 DNA Mariner 305 1285 -2 1611 239 131 42 chrX 79937888 79938582 -97035558 + L1MC4 LINE L1 7327 8042 0 22 70 0 0 chrX 79938866 79938909 -97035231 + AT_rich Low_complexity Low_complexity 1 43 0 7884 194 34 15 chrX 79940378 79943527 -97030613 + L1PA14 LINE L1 1624 4841 -2743 5658 115 15 19 chrX 79943527 79943701 -97030439 + L1PA14 LINE L1 6294 6467 -1132 2023 127 3 10 chrX 79943701 79944000 -97030140 + AluSx SINE Alu 1 297 -15 5658 115 15 19 chrX 79944000 79944294 -97029846 + L1PA14 LINE L1 6467 6760 -839 1858 117 0 23 chrX 79944294 79944386 -97029754 + AluSg SINE Alu 39 132 -178 189 0 0 0 chrX 79944386 79944407 -97029733 + (TA)n Simple_repeat Simple_repeat 2 22 0 1858 117 0 23 chrX 79944407 79944579 -97029561 + AluSg SINE Alu 132 297 -13 5658 115 15 19 chrX 79944579 79944750 -97029390 + L1PA14 LINE L1 6760 6930 -669 2024 125 0 44 chrX 79944750 79945069 -97029071 + AluSq SINE Alu 1 305 -8 5658 115 15 19 chrX 79945069 79945737 -97028403 + L1PA14 LINE L1 6930 7599 0 333 306 45 50 chrX 79946507 79946706 -97027434 - MIR SINE MIR -8 254 57 294 214 89 45 chrX 79948192 79948304 -97025836 + MIR SINE MIR 72 188 -74 1886 140 187 11 chrX 79948567 79948931 -97025209 + MSTA LTR MaLR 1 428 0 3383 178 39 61 chrX 79948931 79949366 -97024774 + MSTA-int LTR MaLR 2 414 -1237 189 0 0 0 chrX 79949366 79949387 -97024753 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3383 178 39 61 chrX 79949387 79949738 -97024402 + MSTA-int LTR MaLR 414 771 -880 8646 184 83 19 chrX 79949738 79951387 -97022753 - MER52A LTR ERV1 0 1755 1 4031 168 117 18 chrX 79951387 79952174 -97021966 + MSTA-int LTR MaLR 716 1580 0 2004 154 125 8 chrX 79952174 79952557 -97021583 + MSTA LTR MaLR 1 428 0 22 0 0 0 chrX 79953908 79953930 -97020210 + AT_rich Low_complexity Low_complexity 1 22 0 369 93 0 0 chrX 79954413 79954467 -97019673 + (TG)n Simple_repeat Simple_repeat 1 54 0 671 277 19 34 chrX 79954758 79955025 -97019115 - L1M4 LINE L1 -1896 4250 3988 29 28 0 0 chrX 79955239 79955275 -97018865 + AT_rich Low_complexity Low_complexity 1 36 0 647 172 8 0 chrX 79955295 79955417 -97018723 + MLT2B2 LTR ERVL 3 125 -390 299 217 12 12 chrX 79955494 79955577 -97018563 - L1PA16 LINE L1 -16 6150 6068 * 419 189 9 28 chrX 79955576 79955682 -97018458 - L1M4 LINE L1 -2240 3906 3803 937 334 68 32 chrX 79955847 79956407 -97017733 - HERV16 LTR ERVL -4154 842 263 1007 317 63 18 chrX 79956582 79957002 -97017138 - LTR16A LTR ERVL 0 450 8 407 311 36 14 chrX 79957034 79957253 -97016887 - L1MEc LINE L1 -4323 2073 1850 2329 250 50 38 chrX 79957452 79958606 -97015534 - L1ME1 LINE L1 -9 6157 4981 616 276 41 18 chrX 79958632 79958853 -97015287 - L1ME1 LINE L1 -23 6143 5918 2136 265 72 14 chrX 79959014 79960368 -97013772 - L1MC4 LINE L1 -755 5391 4495 512 138 0 0 chrX 79960376 79960463 -97013677 - L1PA16 LINE L1 -2 7602 7516 4104 110 45 98 chrX 79960522 79961351 -97012789 + LTR1 LTR ERV1 1 785 0 11512 231 51 18 chrX 79961351 79966501 -97007639 - L1PA16 LINE L1 -88 7516 2182 340 356 0 8 chrX 79966733 79966921 -97007219 - L1PA16 LINE L1 -5277 2297 2084 1312 318 24 34 chrX 79967003 79967588 -97006552 - L1PA16 LINE L1 -6206 1368 790 1418 236 53 34 chrX 79967598 79968128 -97006012 - L1MDb LINE L1 -1663 4877 4338 2867 97 35 14 chrX 79968129 79968184 -97005956 - MLT2A1 LTR ERVL 0 444 392 288 0 0 0 chrX 79968184 79968216 -97005924 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 303 28 0 0 chrX 79968215 79968251 -97005889 + (TA)n Simple_repeat Simple_repeat 1 36 0 2867 97 35 14 chrX 79968216 79968630 -97005510 - MLT2A1 LTR ERVL -52 392 1 42511 75 13 6 chrX 79968630 79974130 -97000010 - HERVL-A1 LTR ERVL 0 5654 116 2409 121 22 8 chrX 79974130 79974493 -96999647 - MLT2A1 LTR ERVL -76 368 1 1000 278 66 44 chrX 79974553 79974736 -96999404 - L1MDb LINE L1 -2612 3928 3750 2376 93 0 0 chrX 79974736 79975037 -96999103 - AluSg1 SINE Alu -8 301 1 1000 278 66 44 chrX 79975037 79975642 -96998498 - L1MDb LINE L1 -2790 3750 3123 925 248 154 4 chrX 79975666 79976174 -96997966 - L1MDb LINE L1 -4894 1646 1066 * 6722 92 6 0 chrX 79976167 79977394 -96996746 - L1PA8 LINE L1 -5 6167 4936 1552 220 8 16 chrX 79977584 79977961 -96996179 - L1MA10 LINE L1 -2 6332 5959 293 150 17 0 chrX 79977966 79978026 -96996114 + L1 LINE L1 5117 5177 -969 302 44 0 22 chrX 79978421 79978466 -96995674 + (TATAA)n Simple_repeat Simple_repeat 2 45 0 3368 211 44 15 chrX 79979453 79980725 -96993415 - L1MB8 LINE L1 -14 6164 4854 1733 144 63 28 chrX 79981393 79981755 -96992385 + THE1C LTR MaLR 1 375 0 231 290 0 11 chrX 79981881 79981974 -96992166 + L1ME LINE L1 795 886 -5184 491 237 101 0 chrX 79982083 79982252 -96991888 + MER53 DNA DNA 4 189 0 2098 32 0 0 chrX 79982954 79983206 -96990934 + L1PA4 LINE L1 5901 6152 -3 1031 211 81 30 chrX 79983230 79983562 -96990578 + MER4B-int LTR ERV1 1989 2337 -4421 273 165 25 13 chrX 79984541 79984620 -96989520 + (TA)n Simple_repeat Simple_repeat 1 80 0 1548 169 70 0 chrX 79985772 79986044 -96988096 - AluSx SINE Alu -19 293 3 32 57 0 0 chrX 79986187 79986240 -96987900 + AT_rich Low_complexity Low_complexity 1 53 0 3231 204 12 18 chrX 79986813 79987474 -96986666 - L1PA16 LINE L1 -34 6835 6179 204 40 0 0 chrX 79987474 79987499 -96986641 + (TTA)n Simple_repeat Simple_repeat 3 27 0 261 0 0 0 chrX 79987499 79987528 -96986612 - L1PA3 LINE L1 -18 6137 6109 * 4200 22 0 0 chrX 79987524 79988016 -96986124 + L1P2 LINE L1 5291 5782 -373 2874 192 13 41 chrX 79988012 79988902 -96985238 - L1PA16 LINE L1 -682 6187 5307 * 332 113 38 0 chrX 79988904 79988957 -96985183 - MLT2A2 LTR ERVL 0 453 399 235 226 71 0 chrX 79988960 79989044 -96985096 - L1MC4 LINE L1 -1339 6703 6614 2908 85 20 10 chrX 79989050 79989450 -96984690 - MLT2A1 LTR ERVL -40 404 1 8793 240 34 13 chrX 79989451 79992699 -96981441 - L1PA16 LINE L1 -1541 5308 2002 1358 124 5 0 chrX 79992702 79992911 -96981229 + L1P3 LINE L1 1 210 -6251 6709 122 50 36 chrX 79993016 79994225 -96979915 + MER41-int LTR ERV1 3858 5083 -863 4292 186 36 6 chrX 79994225 79995514 -96978626 - L1MC1 LINE L1 -244 6089 4758 1829 257 47 17 chrX 79995512 79996108 -96978032 - L1M4 LINE L1 -1202 4944 4331 * 1518 117 23 31 chrX 79996424 79996681 -96977459 + MER4-int LTR ERV1 175 429 -6169 1319 146 18 5 chrX 79996714 79996933 -96977207 + MER50 LTR ERV1 1 222 -512 1469 178 56 11 chrX 79996936 79997223 -96976917 + MER50 LTR ERV1 435 734 0 342 149 13 62 chrX 79997229 79997438 -96976702 + MER4-int LTR ERV1 524 840 -5758 756 140 62 25 chrX 79997479 79997652 -96976488 + MER4-int LTR ERV1 1269 2015 -4316 7824 16 0 0 chrX 79997657 79998852 -96975288 - L1PA3 LINE L1 0 6155 4961 14498 30 3 1 chrX 79998852 80000602 -96973538 + L1PA3 LINE L1 3217 4969 -1177 3101 148 79 25 chrX 80000602 80001249 -96972891 + MER4-int LTR ERV1 3805 4486 -2112 2200 248 49 59 chrX 80001385 80002184 -96971956 + L1ME3A LINE L1 5368 6158 -12 4687 126 56 14 chrX 80002363 80003150 -96970990 - L1PA16 LINE L1 0 6166 5347 1920 214 71 6 chrX 80003148 80003643 -96970497 - L1PA16 LINE L1 -1013 5133 4607 * 1304 239 6 3 chrX 80003641 80003968 -96970172 - L1 LINE L1 -1693 4453 4126 * 1420 226 3 3 chrX 80003978 80004299 -96969841 - AluJo SINE Alu 0 321 1 2094 112 0 3 chrX 80004405 80004727 -96969413 + AluSx SINE Alu 1 321 0 1327 213 52 11 chrX 80005668 80005940 -96968200 + L1M2c LINE L1 8 290 -6499 2040 176 35 32 chrX 80005940 80006491 -96967649 - MLT2A2 LTR ERVL 0 554 1 301 60 20 20 chrX 80006491 80006541 -96967599 - HERVL-A2 LTR ERVL 0 5654 5605 1070 191 5 29 chrX 80006669 80006879 -96967261 + L1MC1 LINE L1 6093 6297 -36 1175 260 58 27 chrX 80006920 80007429 -96966711 - L1M4 LINE L1 -1390 4756 4222 1320 176 4 7 chrX 80007429 80007702 -96966438 - L1MA4 LINE L1 -1 6299 6028 1175 260 58 27 chrX 80007702 80007827 -96966313 - L1M4 LINE L1 -1924 4222 4102 1080 268 56 45 chrX 80008066 80008121 -96966019 + LTR40a LTR ERVL 139 192 -327 1679 125 16 43 chrX 80008121 80008292 -96965848 + L1PA15 LINE L1 5864 6028 -137 2207 90 0 3 chrX 80008292 80008608 -96965532 + AluSg SINE Alu 2 316 0 1679 125 16 43 chrX 80008608 80008738 -96965402 + L1PA15 LINE L1 6028 6160 -5 1080 268 56 45 chrX 80008738 80009059 -96965081 + LTR40a LTR ERVL 192 519 0 24 0 0 0 chrX 80009114 80009138 -96965002 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 80009410 80009441 -96964699 + AT_rich Low_complexity Low_complexity 1 31 0 766 388 39 8 chrX 80010023 80010407 -96963733 - LTR33 LTR ERVL -14 507 112 341 248 26 60 chrX 80010547 80010664 -96963476 - MLT-int LTR MaLR -958 777 665 657 198 12 66 chrX 80010681 80010848 -96963292 - MLT1A1 LTR MaLR -207 158 1 1187 238 74 7 chrX 80010852 80011150 -96962990 + MLT1A1 LTR MaLR 48 365 0 332 263 66 29 chrX 80011510 80011647 -96962493 - L1M4 LINE L1 -1930 4216 4075 749 219 41 6 chrX 80011764 80011933 -96962207 + L1MCa LINE L1 20 194 -6232 2804 176 52 18 chrX 80011941 80012635 -96961505 - L1MC3 LINE L1 -743 5403 5156 5464 262 60 8 chrX 80012737 80014708 -96959432 - L1MC3 LINE L1 -1278 4868 2795 1773 238 12 31 chrX 80014717 80015137 -96959003 + ERVL LTR ERVL 1174 1585 -4179 10444 245 24 36 chrX 80015178 80016835 -96957305 + L1PA15 LINE L1 1222 2896 -4688 4324 112 23 10 chrX 80016835 80017530 -96956610 + L1MA1 LINE L1 5599 6302 0 10444 245 24 36 chrX 80017530 80020452 -96953688 + L1PA15 LINE L1 2896 5676 -1908 4749 175 16 3 chrX 80020607 80022278 -96951862 + L1PA15 LINE L1 5920 7603 0 4570 155 26 73 chrX 80022280 80023286 -96950854 + ERVL-B1 LTR ERVL 4799 5757 -7 1259 261 74 32 chrX 80023286 80023689 -96950451 + MLT2B1 LTR ERVL 1 420 -100 434 154 0 0 chrX 80023789 80023854 -96950286 - Tigger3(Golem) DNA MER2_type -73 2956 2892 5067 167 42 11 chrX 80023854 80024732 -96949408 + L1M1 LINE L1 1342 2246 -5319 23 54 0 0 chrX 80226222 80226259 -96747881 + AT_rich Low_complexity Low_complexity 1 37 0 326 229 53 53 chrX 80227025 80227156 -96746984 - MIR SINE MIR -121 141 11 241 277 31 0 chrX 80227600 80227665 -96746475 + MER5B DNA MER1_type 2 68 -110 839 243 21 4 chrX 80227672 80227907 -96746233 - AluSp SINE Alu -22 291 53 486 0 0 0 chrX 80228967 80229021 -96745119 + (T)n Simple_repeat Simple_repeat 1 54 0 10718 219 23 8 chrX 80229762 80231853 -96742287 + L1PB1 LINE L1 2144 4375 -2413 423 0 0 0 chrX 80231853 80231900 -96742240 + (CTA)n Simple_repeat Simple_repeat 3 49 0 10718 219 23 8 chrX 80231900 80232835 -96741305 + L1PB1 LINE L1 4375 5295 -1493 5546 147 17 13 chrX 80232836 80234004 -96740136 + L1PB1 LINE L1 5606 6786 -7 23 33 0 0 chrX 80234687 80234717 -96739423 + AT_rich Low_complexity Low_complexity 1 30 0 227 204 0 175 chrX 80235260 80235363 -96738777 + MLT1I LTR MaLR 318 402 -7 362 307 44 9 chrX 80236259 80236373 -96737767 - L2 LINE L2 -6 3266 3149 186 43 0 0 chrX 80238116 80238139 -96736001 + (GA)n Simple_repeat Simple_repeat 2 24 0 2103 136 9 0 chrX 80238577 80238916 -96735224 - L1MA1 LINE L1 0 6302 5961 6153 72 40 7 chrX 80238916 80239760 -96734380 - L1PA7 LINE L1 -2 6152 5281 2941 107 0 0 chrX 80239758 80240179 -96733961 - L1PA7 LINE L1 -2413 3733 3313 * 367 127 0 0 chrX 80240175 80240230 -96733910 + L1P4 LINE L1 5435 5489 -679 * 22174 198 18 29 chrX 80240244 80246079 -96728061 - L1P4 LINE L1 -685 5804 10 254 158 246 0 chrX 80246087 80246144 -96727996 - L1PB2 LINE L1 -115 6036 5966 * 2139 145 8 36 chrX 80246136 80246360 -96727780 - L1ME LINE L1 -297 5824 5613 2149 69 43 40 chrX 80246360 80246664 -96727476 - AluY SINE Alu -6 305 1 2139 145 8 36 chrX 80246664 80246863 -96727277 - L1ME LINE L1 -508 5613 5410 2491 70 0 3 chrX 80246864 80247176 -96726964 - AluY SINE Alu 0 311 1 19239 185 34 32 chrX 80247192 80249150 -96724990 - L1 LINE L1 -1222 6343 4391 2552 97 11 3 chrX 80249150 80249502 -96724638 + THE1A LTR MaLR 1 355 0 10750 105 35 1 chrX 80249502 80251029 -96723111 + THE1A-int LTR MaLR 1 1580 0 2658 94 11 0 chrX 80251029 80251380 -96722760 + THE1A LTR MaLR 1 355 0 19239 185 34 32 chrX 80251380 80252720 -96721420 - L1 LINE L1 -3174 4391 3055 1486 141 0 8 chrX 80252720 80252954 -96721186 - AluSg/x SINE Alu 0 310 79 19239 185 34 32 chrX 80252954 80253700 -96720440 - L1 LINE L1 -4510 3055 2312 2220 67 3 25 chrX 80253700 80253982 -96720158 - AluY SINE Alu -19 292 17 19239 185 34 32 chrX 80253982 80256255 -96717885 - L1 LINE L1 -5253 2312 8 325 262 186 14 chrX 80256433 80256578 -96717562 + MER5A DNA MER1_type 9 178 -11 972 242 152 28 chrX 80256860 80257182 -96716958 + MLT1D LTR MaLR 127 488 -17 201 208 0 21 chrX 80257289 80257337 -96716803 + (TAA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chrX 80257516 80257540 -96716600 + AT_rich Low_complexity Low_complexity 1 24 0 254 264 109 9 chrX 80257660 80257770 -96716370 + L2 LINE L2 2933 3053 -219 835 290 49 4 chrX 80258072 80258317 -96715823 - MIR SINE MIR 0 262 7 243 255 255 0 chrX 80258858 80258956 -96715184 + MIR SINE MIR 20 142 -66 1272 60 0 6 chrX 80260687 80260853 -96713287 - L1PA4 LINE L1 -8 6147 5983 294 87 0 0 chrX 80261313 80261359 -96712781 + (GA)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chrX 80262294 80262314 -96711826 + (T)n Simple_repeat Simple_repeat 1 20 0 267 330 11 0 chrX 80262559 80262647 -96711493 - MIR3 SINE MIR -17 191 103 522 255 163 33 chrX 80262659 80262812 -96711328 + MER5A DNA MER1_type 16 188 -1 1132 163 28 23 chrX 80263467 80263682 -96710458 + MER20 DNA MER1_type 3 218 -1 42302 38 21 1 chrX 80264575 80270603 -96703537 + L1PA3 LINE L1 2 6155 0 186 43 0 0 chrX 80271515 80271538 -96702602 + (TA)n Simple_repeat Simple_repeat 1 23 0 2407 219 44 25 chrX 80272505 80273139 -96701001 - MLT1E2 LTR MaLR 0 626 1 255 320 39 0 chrX 80273182 80273260 -96700880 - MER91A DNA MER1_type -115 81 1 268 374 123 19 chrX 80274346 80274501 -96699639 + MIR3 SINE MIR 5 175 -33 295 307 68 43 chrX 80274621 80274805 -96699335 + MIR3 SINE MIR 33 216 -31 256 245 18 25 chrX 80274877 80274972 -96699168 + MIR3 SINE MIR 66 160 -48 204 40 0 0 chrX 80276026 80276051 -96698089 + (TA)n Simple_repeat Simple_repeat 1 25 0 2577 180 22 54 chrX 80276239 80276832 -96697308 + MER4B LTR ERV1 1 574 -36 981 209 55 121 chrX 80277192 80277772 -96696368 + MER34 LTR ERV1 1 542 0 334 241 23 0 chrX 80278330 80278417 -96695723 + MER103 DNA DNA 22 110 -56 3890 137 14 2 chrX 80279330 80279957 -96694183 - MER41B LTR ERV1 0 635 1 862 204 74 0 chrX 80280961 80281192 -96692948 - MER69 DNA AcHobo -1 2525 2278 523 196 0 0 chrX 80281199 80281291 -96692849 - Tigger7 DNA MER2_type -29 2458 2367 420 152 13 0 chrX 80281282 80281361 -96692779 - MER69 DNA AcHobo -235 2291 2212 * 488 173 0 0 chrX 80281361 80281436 -96692704 - MER69 DNA AcHobo -2450 76 2 210 220 51 0 chrX 80281840 80281899 -96692241 + L2 LINE L2 3252 3313 0 275 349 97 11 chrX 80282038 80282213 -96691927 - MIR SINE MIR -34 228 39 490 315 45 50 chrX 80286434 80286559 -96687581 - MIR SINE MIR -29 233 109 999 169 113 36 chrX 80286559 80286719 -96687421 - MER33 DNA MER1_type -2261 324 178 249 33 0 0 chrX 80286719 80286749 -96687391 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 1607 203 4 0 chrX 80286750 80287031 -96687109 - AluJo SINE Alu -28 284 3 999 169 113 36 chrX 80287031 80287049 -96687091 - MER33 DNA MER1_type -2407 178 163 333 47 0 0 chrX 80287049 80287092 -96687048 + (TG)n Simple_repeat Simple_repeat 1 43 0 999 169 113 36 chrX 80287092 80287211 -96686929 - MER33 DNA MER1_type -2422 163 1 490 315 45 50 chrX 80287211 80287307 -96686833 - MIR SINE MIR -153 109 13 357 237 158 40 chrX 80288251 80288428 -96685712 + MIR SINE MIR 50 247 -15 384 331 27 14 chrX 80288829 80288977 -96685163 + MIR SINE MIR 47 196 -66 312 279 49 103 chrX 80290120 80290324 -96683816 + L1M2 LINE L1 821 1013 -5836 378 0 0 0 chrX 80290364 80290406 -96683734 + (CA)n Simple_repeat Simple_repeat 1 42 0 297 89 0 0 chrX 80293415 80293460 -96680680 + (TG)n Simple_repeat Simple_repeat 2 46 0 23 54 0 0 chrX 80298388 80298425 -96675715 + AT_rich Low_complexity Low_complexity 1 37 0 394 242 44 0 chrX 80299282 80299373 -96674767 + MIR3 SINE MIR 86 180 -28 180 244 12 85 chrX 80299571 80299653 -96674487 - L2 LINE L2 -97 3216 3141 415 229 10 0 chrX 80299713 80299809 -96674331 - MIR3 SINE MIR -11 197 101 22 0 0 0 chrX 80300180 80300202 -96673938 + AT_rich Low_complexity Low_complexity 1 22 0 2403 71 0 13 chrX 80300692 80301003 -96673137 + AluSc SINE Alu 1 307 -2 437 264 189 7 chrX 80301642 80301790 -96672350 - MER5A DNA MER1_type -2 187 13 2338 112 117 5 chrX 80303000 80303385 -96670755 - MSTA LTR MaLR 0 428 1 2505 24 41 0 chrX 80303632 80303923 -96670217 - AluY SINE Alu -8 303 1 312 272 48 32 chrX 80304896 80305021 -96669119 - MIR SINE MIR -71 191 65 25 65 0 0 chrX 80305113 80305159 -96668981 + AT_rich Low_complexity Low_complexity 1 46 0 208 187 45 187 chrX 80305954 80306117 -96668023 - MIR SINE MIR -50 212 73 2274 111 22 33 chrX 80306542 80306910 -96667230 + THE1B LTR MaLR 1 364 0 320 184 91 24 chrX 80307057 80307155 -96666985 - MIR SINE MIR -100 108 1 256 356 121 27 chrX 80308567 80308716 -96665424 - MIR SINE MIR -91 171 9 23 86 0 0 chrX 80308717 80308775 -96665365 + AT_rich Low_complexity Low_complexity 1 58 0 1459 86 0 0 chrX 80309867 80310054 -96664086 + U2 snRNA snRNA 1 187 -1 2373 81 3 0 chrX 80310081 80310378 -96663762 + AluSq SINE Alu 1 298 -15 27 81 0 0 chrX 80310690 80310752 -96663388 + AT_rich Low_complexity Low_complexity 1 62 0 2044 115 0 14 chrX 80311577 80311873 -96662267 + AluSx SINE Alu 1 292 -20 1809 152 17 3 chrX 80312677 80312973 -96661167 + AluJb SINE Alu 2 301 -11 322 230 14 0 chrX 80314463 80314537 -96659603 - MER116 DNA Mariner -2 78 4 264 91 0 0 chrX 80314720 80314753 -96659387 + U2 snRNA snRNA 1 33 -155 668 318 89 13 chrX 80315291 80315527 -96658613 + MIR SINE MIR 9 262 0 26 30 0 0 chrX 80316147 80316180 -96657960 + AT_rich Low_complexity Low_complexity 1 33 0 1378 206 0 37 chrX 80317307 80317603 -96656537 + AluJo SINE Alu 1 285 -27 1459 186 13 42 chrX 80318831 80319143 -96654997 + AluJo SINE Alu 1 303 -9 192 77 0 0 chrX 80319248 80319274 -96654866 + (GA)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chrX 80319787 80319810 -96654330 + AT_rich Low_complexity Low_complexity 1 23 0 2366 88 0 0 chrX 80319989 80320284 -96653856 + AluSg SINE Alu 1 295 -15 1051 148 64 35 chrX 80321375 80321578 -96652562 - MER3 DNA MER1_type 0 209 1 26 0 0 0 chrX 80323907 80323933 -96650207 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chrX 80325965 80325992 -96648148 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chrX 80326124 80326153 -96647987 + AT_rich Low_complexity Low_complexity 1 29 0 430 277 37 41 chrX 80326480 80326638 -96647502 - MIR3 SINE MIR -9 199 41 21 36 0 0 chrX 80326691 80326719 -96647421 + AT_rich Low_complexity Low_complexity 1 28 0 884 228 59 25 chrX 80326752 80326954 -96647186 - MIR SINE MIR -31 231 23 24 0 0 0 chrX 80326962 80326986 -96647154 + AT_rich Low_complexity Low_complexity 1 24 0 2008 94 0 0 chrX 80327647 80327902 -96646238 + AluSx SINE Alu 28 282 -30 21 89 0 0 chrX 80327960 80328016 -96646124 + AT_rich Low_complexity Low_complexity 1 56 0 713 253 56 5 chrX 80329299 80329497 -96644643 + MER3 DNA MER1_type 2 209 0 2129 92 20 20 chrX 80330194 80330487 -96643653 + AluY SINE Alu 3 295 -16 22 0 0 0 chrX 80331107 80331129 -96643011 + AT_rich Low_complexity Low_complexity 1 22 0 219 146 0 0 chrX 80331401 80331442 -96642698 + (T)n Simple_repeat Simple_repeat 1 41 0 42545 36 21 1 chrX 80331445 80337477 -96636663 - L1PA3 LINE L1 0 6155 1 5761 121 35 1 chrX 80338236 80339841 -96634299 - L1PA14 LINE L1 -2 6159 4522 2179 39 0 4 chrX 80339892 80340150 -96633990 - AluY SINE Alu -10 301 45 282 29 0 0 chrX 80341188 80341223 -96632917 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chrX 80341512 80341535 -96632605 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 80343375 80343403 -96630737 + AT_rich Low_complexity Low_complexity 1 28 0 464 233 0 0 chrX 80343556 80343642 -96630498 + L2 LINE L2 3225 3310 -3 4909 37 0 5 chrX 80343840 80344433 -96629707 + L1PA5 LINE L1 5565 6154 0 1779 68 24 8 chrX 80344621 80344870 -96629270 - L1PA13 LINE L1 0 6163 5911 334 345 100 65 chrX 80346323 80346752 -96627388 - L3 LINE CR1 -2 1575 1132 21 0 0 0 chrX 80346903 80346924 -96627216 + AT_rich Low_complexity Low_complexity 1 21 0 703 79 0 10 chrX 80349072 80349173 -96624967 + L1M1 LINE L1 5505 5604 -698 213 362 76 19 chrX 80349255 80349360 -96624780 + MIR SINE MIR 36 146 -62 644 214 102 36 chrX 80349534 80349730 -96624410 + MER3 DNA MER1_type 1 209 0 300 357 18 9 chrX 80350903 80351015 -96623125 - MIR SINE MIR -65 143 31 1670 117 87 53 chrX 80351108 80351407 -96622733 + AluSx SINE Alu 3 311 -1 351 0 0 0 chrX 80355038 80355077 -96619063 + (TG)n Simple_repeat Simple_repeat 2 40 0 1785 157 10 35 chrX 80355080 80355392 -96618748 - AluSx SINE Alu -8 304 1 216 0 0 0 chrX 80356077 80356101 -96618039 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chrX 80356418 80356449 -96617691 + AT_rich Low_complexity Low_complexity 1 31 0 2370 63 0 3 chrX 80358110 80358413 -96615727 + AluY SINE Alu 1 302 -9 189 0 0 0 chrX 80358920 80358941 -96615199 + (TG)n Simple_repeat Simple_repeat 2 22 0 844 209 0 0 chrX 80358946 80359104 -96615036 - FAM SINE Alu -17 158 1 1030 110 13 13 chrX 80359968 80360123 -96614017 - AluY SINE Alu -4 307 153 1258 137 4 22 chrX 80361054 80361281 -96612859 - L1PA14 LINE L1 -1 6160 5938 27 29 0 0 chrX 80362994 80363028 -96611112 + AT_rich Low_complexity Low_complexity 1 34 0 805 82 0 0 chrX 80363243 80363353 -96610787 - L1MA3 LINE L1 0 6305 6196 2463 74 0 3 chrX 80363780 80364089 -96610051 - AluSq SINE Alu -5 308 1 968 194 5 46 chrX 80364393 80364589 -96609551 - MER20 DNA MER1_type -1 218 31 9009 150 15 5 chrX 80365645 80368242 -96605898 - L1MA2 LINE L1 0 7723 5098 12453 134 11 13 chrX 80368245 80368784 -96605356 - L1PA10 LINE L1 -16 6152 5613 2435 102 17 14 chrX 80368784 80369145 -96604995 - THE1B LTR MaLR 0 364 3 10228 118 10 33 chrX 80369147 80370764 -96603376 - THE1B-int LTR MaLR 0 1580 1 12453 134 11 13 chrX 80370764 80373124 -96601016 - L1PA10 LINE L1 -556 5612 3279 1400 272 29 42 chrX 80373126 80373805 -96600335 - L1P3 LINE L1 -5088 787 2 14502 186 28 14 chrX 80373830 80376151 -96597989 - L1MA2 LINE L1 -2449 5116 2830 264 30 0 0 chrX 80376151 80376184 -96597956 + (TG)n Simple_repeat Simple_repeat 2 34 0 14502 186 28 14 chrX 80376184 80378603 -96595537 - L1MA2 LINE L1 -4735 2830 15 566 355 11 6 chrX 80381133 80381316 -96592824 + MIR3 SINE MIR 16 199 -9 190 315 0 19 chrX 80384229 80384283 -96589857 - L2 LINE L2 0 3272 3220 808 232 9 24 chrX 80384991 80385202 -96588938 + MER3 DNA MER1_type 2 209 0 212 231 0 0 chrX 80386807 80386846 -96587294 + (TG)n Simple_repeat Simple_repeat 2 40 0 2412 38 3 29 chrX 80387052 80387365 -96586775 - AluY SINE Alu -6 305 1 1505 141 0 27 chrX 80387890 80388153 -96585987 + L1PB1 LINE L1 5895 6150 -1 367 341 73 43 chrX 80388233 80388397 -96585743 - MIR3 SINE MIR -10 198 30 45 19 0 0 chrX 80388468 80388520 -96585620 + AT_rich Low_complexity Low_complexity 1 52 0 183 80 0 0 chrX 80390615 80390640 -96583500 + (GAA)n Simple_repeat Simple_repeat 1 25 0 26 30 0 0 chrX 80393219 80393252 -96580888 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 80394129 80394150 -96579990 + AT_rich Low_complexity Low_complexity 1 21 0 2530 37 0 0 chrX 80395298 80395592 -96578548 + AluY SINE Alu 1 294 -17 2465 80 0 3 chrX 80395682 80395995 -96578145 + AluSx SINE Alu 1 312 0 21 82 0 0 chrX 80398327 80398376 -96575764 + AT_rich Low_complexity Low_complexity 1 49 0 2585 51 0 0 chrX 80398464 80398775 -96575365 + AluY SINE Alu 1 311 0 1706 151 0 33 chrX 80400143 80400442 -96573698 + AluSx SINE Alu 1 289 -23 24 0 0 0 chrX 80400442 80400466 -96573674 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chrX 80400973 80401000 -96573140 + AT_rich Low_complexity Low_complexity 1 27 0 2088 117 20 0 chrX 80401088 80401387 -96572753 - AluSx SINE Alu -7 305 1 21 36 0 0 chrX 80402462 80402490 -96571650 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chrX 80403707 80403732 -96570408 + (A)n Simple_repeat Simple_repeat 1 25 0 306 0 0 0 chrX 80403787 80403821 -96570319 + (TG)n Simple_repeat Simple_repeat 2 35 0 235 350 135 23 chrX 80403901 80404344 -96569796 + L2 LINE L2 2438 2930 -384 849 67 0 0 chrX 80404479 80404583 -96569557 - AluSx SINE Alu -15 294 191 992 100 0 7 chrX 80404586 80404726 -96569414 - AluSx SINE Alu -173 139 1 699 12 0 0 chrX 80405122 80405205 -96568935 - AluY SINE Alu -12 299 217 21 0 0 0 chrX 80405607 80405628 -96568512 + AT_rich Low_complexity Low_complexity 1 21 0 191 94 57 19 chrX 80407507 80407560 -96566580 + (TA)n Simple_repeat Simple_repeat 2 56 0 400 169 52 7 chrX 80407632 80407768 -96566372 + (TA)n Simple_repeat Simple_repeat 1 142 0 1636 153 28 25 chrX 80407911 80408193 -96565947 - AluJb SINE Alu -24 288 6 346 218 10 89 chrX 80408327 80408428 -96565712 - MIR3 SINE MIR -18 190 98 217 329 38 0 chrX 80408416 80408495 -96565645 - MIR SINE MIR -3 259 178 * 268 241 0 0 chrX 80409647 80409705 -96564435 - L2 LINE L2 -4 3268 3211 267 337 166 5 chrX 80409736 80409929 -96564211 + MIR SINE MIR 28 251 -11 306 243 90 36 chrX 80409938 80410049 -96564091 - MIR SINE MIR -56 206 90 250 365 39 10 chrX 80410367 80410471 -96563669 - MIR SINE MIR -72 136 30 294 266 40 65 chrX 80410590 80410714 -96563426 + MIR SINE MIR 30 150 -112 2206 146 61 28 chrX 80410801 80411305 -96562835 - MLT2A2 LTR ERVL -8 546 5 7377 96 8 6 chrX 80411309 80412375 -96561765 - HERVL-A2 LTR ERVL 0 5654 4545 353 356 34 13 chrX 80412780 80412996 -96561144 + MIR SINE MIR 18 241 -21 245 331 50 36 chrX 80413014 80413204 -96560936 - MIR3 SINE MIR -66 196 5 23 0 0 0 chrX 80413534 80413557 -96560583 + AT_rich Low_complexity Low_complexity 1 23 0 687 339 86 29 chrX 80413983 80414683 -96559457 + L2 LINE L2 1806 2545 -769 591 312 68 17 chrX 80414689 80414926 -96559214 - MIR SINE MIR 0 262 14 392 382 27 23 chrX 80414946 80415205 -96558935 + L2 LINE L2 2560 2819 -495 345 47 0 0 chrX 80415426 80415469 -96558671 + (TG)n Simple_repeat Simple_repeat 2 44 0 473 93 0 70 chrX 80415953 80416039 -96558101 - MADE1 DNA Mariner 0 80 1 546 222 25 49 chrX 80416276 80416438 -96557702 - L1ME4a LINE L1 -4 6117 5960 432 271 68 11 chrX 80416441 80416618 -96557522 - L1ME4a LINE L1 -264 5857 5671 307 353 154 5 chrX 80416622 80416823 -96557317 + L1M4 LINE L1 4018 4248 -1898 1225 190 0 0 chrX 80416852 80417119 -96557021 - AluJb SINE Alu 0 312 86 288 331 162 7 chrX 80418223 80418377 -96555763 - MER5B DNA MER1_type 0 178 1 192 40 0 0 chrX 80418548 80418573 -96555567 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 387 0 0 0 chrX 80419145 80419188 -96554952 + (CA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chrX 80419187 80419217 -96554923 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 25 51 0 0 chrX 80419223 80419262 -96554878 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chrX 80419293 80419326 -96554814 + AT_rich Low_complexity Low_complexity 1 33 0 3223 80 2 0 chrX 80419406 80419845 -96554295 - L1PA13 LINE L1 -7 6156 5717 2728 123 8 47 chrX 80419845 80420296 -96553844 + L1P4 LINE L1 5041 5473 -695 2121 114 0 3 chrX 80420296 80420594 -96553546 + AluSx SINE Alu 1 297 -15 2728 123 8 47 chrX 80420594 80420800 -96553340 + L1P4 LINE L1 5473 5685 -483 23 0 0 0 chrX 80421364 80421387 -96552753 + AT_rich Low_complexity Low_complexity 1 23 0 1466 90 70 4 chrX 80421546 80421790 -96552350 - L1MA9 LINE L1 0 6312 6053 2464 123 7 19 chrX 80423090 80423512 -96550628 - L1MA3 LINE L1 0 6305 5889 4535 180 26 4 chrX 80423512 80424425 -96549715 - L1 LINE L1 -1445 4701 3769 14248 206 28 9 chrX 80424447 80429777 -96544363 + L1PBa LINE L1 1 5531 -1331 705 188 30 0 chrX 80429871 80430004 -96544136 - MLT1E2 LTR MaLR 0 626 490 25 0 0 0 chrX 80430004 80430029 -96544111 + AT_rich Low_complexity Low_complexity 1 25 0 4476 131 26 12 chrX 80432917 80433682 -96540458 - L1MC1 LINE L1 0 6333 5558 688 264 151 9 chrX 80433946 80434158 -96539982 - MIR SINE MIR 0 262 21 1830 122 27 111 chrX 80434200 80434568 -96539572 + MER1B DNA MER1_type 1 337 0 911 99 23 0 chrX 80434857 80434988 -96539152 + HERVL-A2 LTR ERVL 5520 5653 -1 2082 162 50 28 chrX 80434989 80435532 -96538608 + MLT2A2 LTR ERVL 1 554 0 1936 80 59 17 chrX 80435537 80435826 -96538314 + L1PA16 LINE L1 5864 6164 -2 1686 226 100 28 chrX 80435848 80436309 -96537831 + MLT1D LTR MaLR 12 505 0 1993 158 22 8 chrX 80436848 80437209 -96536931 - MER47A DNA MER2_type 0 366 1 1202 239 14 58 chrX 80437781 80437834 -96536306 - MLT2D LTR ERVL 0 414 360 441 36 0 0 chrX 80437834 80437889 -96536251 + (CA)n Simple_repeat Simple_repeat 2 56 0 1202 239 14 58 chrX 80437889 80438183 -96535957 - MLT2D LTR ERVL -54 360 82 251 194 101 93 chrX 80438084 80438213 -96535927 - MLT1E1 LTR MaLR -408 246 117 * 21 57 0 0 chrX 80438428 80438463 -96535677 + AT_rich Low_complexity Low_complexity 1 35 0 2071 146 40 3 chrX 80438463 80438840 -96535300 - L1MA5A LINE L1 -5 6292 5902 854 288 46 0 chrX 80439075 80439294 -96534846 - MIR SINE MIR -29 233 5 294 252 97 29 chrX 80439358 80439461 -96534679 - MIR3 SINE MIR -5 203 94 24 85 0 0 chrX 80440848 80440907 -96533233 + AT_rich Low_complexity Low_complexity 1 59 0 21 71 0 0 chrX 80441012 80441054 -96533086 + AT_rich Low_complexity Low_complexity 1 42 0 713 278 104 9 chrX 80441110 80441340 -96532800 - MIR SINE MIR -9 253 2 304 260 10 40 chrX 80442260 80442360 -96531780 - L1MC4 LINE L1 -1311 6731 6635 374 56 0 19 chrX 80442902 80442956 -96531184 + (TG)n Simple_repeat Simple_repeat 1 53 0 421 333 128 9 chrX 80443164 80443383 -96530757 + L3 LINE CR1 1331 1575 -2 2453 103 13 13 chrX 80443591 80443970 -96530170 - L1PA11 LINE L1 -3 6171 5793 358 321 9 32 chrX 80444106 80444404 -96529736 + GA-rich Low_complexity Low_complexity 1 291 0 299 96 19 0 chrX 80444423 80444475 -96529665 + (TG)n Simple_repeat Simple_repeat 1 53 0 3181 145 64 9 chrX 80447371 80447949 -96526191 - MER4B LTR ERV1 0 610 1 257 51 26 0 chrX 80448319 80448358 -96525782 + (TATAA)n Simple_repeat Simple_repeat 5 44 0 41 72 0 0 chrX 80448649 80448732 -96525408 + AT_rich Low_complexity Low_complexity 1 83 0 4902 266 58 51 chrX 80449994 80451736 -96522404 + L1MEc LINE L1 22 1751 -4645 2031 143 110 15 chrX 80451736 80452127 -96522013 + MSTA LTR MaLR 1 428 0 4902 266 58 51 chrX 80452127 80452317 -96521823 + L1MEc LINE L1 1751 1938 -4458 1452 184 24 35 chrX 80452317 80452605 -96521535 - AluJb SINE Alu -25 287 3 4902 266 58 51 chrX 80452605 80452782 -96521358 + L1MEc LINE L1 1938 2146 -4250 803 100 0 0 chrX 80452784 80452894 -96521246 + L1MA1 LINE L1 6099 6208 -94 4909 262 57 34 chrX 80452896 80453873 -96520267 + L1MEc LINE L1 2153 3106 -3109 195 42 0 0 chrX 80453873 80453897 -96520243 + (GAAAA)n Simple_repeat Simple_repeat 5 28 0 4909 262 57 34 chrX 80453897 80454686 -96519454 + L1MEc LINE L1 3106 3914 -2301 3133 119 32 26 chrX 80454686 80455217 -96518923 + L1MC1 LINE L1 5798 6331 -2 4909 262 57 34 chrX 80455217 80455464 -96518676 + L1MEc LINE L1 3914 4154 -2061 351 0 0 0 chrX 80455798 80455837 -96518303 + (TG)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chrX 80456817 80456843 -96517297 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chrX 80457438 80457468 -96516672 + AT_rich Low_complexity Low_complexity 1 30 0 378 288 54 9 chrX 80457909 80458020 -96516120 - MIR SINE MIR -76 186 71 22 0 0 0 chrX 80458081 80458103 -96516037 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chrX 80458333 80458374 -96515766 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chrX 80458443 80458464 -96515676 + AT_rich Low_complexity Low_complexity 1 21 0 1687 170 83 65 chrX 80460370 80460828 -96513312 - MER31B LTR ERV1 0 466 1 298 352 82 0 chrX 80461322 80461481 -96512659 + MIR3 SINE MIR 32 203 -5 26 104 0 0 chrX 80461486 80461582 -96512558 + AT_rich Low_complexity Low_complexity 1 96 0 2477 114 13 11 chrX 80461927 80462305 -96511835 - L1PB3 LINE L1 0 6154 5776 304 94 0 31 chrX 80462319 80462383 -96511757 + (TA)n Simple_repeat Simple_repeat 1 62 0 613 63 0 0 chrX 80462392 80462471 -96511669 - L1PB3 LINE L1 -366 5788 5710 372 261 76 0 chrX 80462518 80462610 -96511530 + L2 LINE L2 3179 3277 -36 4967 96 20 12 chrX 80464361 80465112 -96509028 + L1MA1 LINE L1 5542 6298 -4 6137 99 13 1 chrX 80465726 80467176 -96506964 - L1PA11 LINE L1 0 6174 4705 9924 229 20 17 chrX 80467180 80470561 -96503579 - L1PA12 LINE L1 -3121 4463 9 4495 168 77 32 chrX 80470925 80471451 -96502689 - L1MA9 LINE L1 0 6312 5811 225 0 0 0 chrX 80471451 80471476 -96502664 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4495 168 77 32 chrX 80471476 80472190 -96501950 - L1MA9 LINE L1 -501 5811 5021 2105 127 3 0 chrX 80472190 80472498 -96501642 - AluSx SINE Alu -3 309 1 4495 168 77 32 chrX 80472498 80472546 -96501594 - L1MA9 LINE L1 -1291 5021 4977 1252 108 5 20 chrX 80472546 80472741 -96501399 + L1PB3 LINE L1 5963 6154 0 26 104 0 0 chrX 80473086 80473182 -96500958 + AT_rich Low_complexity Low_complexity 1 96 0 298 352 82 0 chrX 80473187 80473346 -96500794 - MIR3 SINE MIR -5 203 32 1687 170 83 65 chrX 80473840 80474298 -96499842 + MER31B LTR ERV1 1 466 0 21 0 0 0 chrX 80476204 80476225 -96497915 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chrX 80476294 80476335 -96497805 + (TA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chrX 80476565 80476587 -96497553 + AT_rich Low_complexity Low_complexity 1 22 0 378 288 54 9 chrX 80476648 80476759 -96497381 + MIR SINE MIR 71 186 -76 23 33 0 0 chrX 80477200 80477230 -96496910 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chrX 80477825 80477851 -96496289 + (TA)n Simple_repeat Simple_repeat 2 27 0 351 0 0 0 chrX 80478831 80478870 -96495270 + (CA)n Simple_repeat Simple_repeat 2 40 0 4909 262 57 34 chrX 80479204 80479451 -96494689 - L1MEc LINE L1 -2061 4154 3914 3133 119 32 26 chrX 80479451 80479982 -96494158 - L1MC1 LINE L1 -2 6331 5798 4909 262 57 34 chrX 80479982 80480771 -96493369 - L1MEc LINE L1 -2301 3914 3145 195 42 0 0 chrX 80480771 80480795 -96493345 + (TTTTC)n Simple_repeat Simple_repeat 5 28 0 4909 262 57 34 chrX 80480795 80481772 -96492368 - L1MEc LINE L1 -3070 3145 2153 803 100 0 0 chrX 80481774 80481884 -96492256 - L1MA1 LINE L1 -94 6208 6099 4902 266 58 51 chrX 80481886 80482063 -96492077 - L1MEc LINE L1 -4250 2146 1972 1452 184 24 35 chrX 80482063 80482351 -96491789 + AluJb SINE Alu 3 287 -25 4902 266 58 51 chrX 80482351 80482541 -96491599 - L1MEc LINE L1 -4424 1972 1785 2031 143 110 15 chrX 80482541 80482932 -96491208 - MSTA LTR MaLR 0 428 1 4902 266 58 51 chrX 80482932 80484674 -96489466 - L1MEc LINE L1 -4611 1785 22 41 72 0 0 chrX 80485936 80486019 -96488121 + AT_rich Low_complexity Low_complexity 1 83 0 257 51 26 0 chrX 80486310 80486349 -96487791 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 3181 145 64 9 chrX 80486719 80487297 -96486843 + MER4B LTR ERV1 1 610 0 299 96 19 0 chrX 80490193 80490245 -96483895 + (CA)n Simple_repeat Simple_repeat 1 53 0 358 321 9 32 chrX 80490264 80490562 -96483578 + CT-rich Low_complexity Low_complexity 1 291 0 2453 103 13 13 chrX 80490698 80491077 -96483063 + L1PA11 LINE L1 5793 6171 -3 421 333 128 9 chrX 80491285 80491504 -96482636 - L3 LINE CR1 -2 1575 1331 374 56 0 19 chrX 80491712 80491766 -96482374 + (CA)n Simple_repeat Simple_repeat 1 53 0 304 260 10 40 chrX 80492308 80492408 -96481732 + L1MC4 LINE L1 6635 6731 -1311 713 278 104 9 chrX 80493328 80493558 -96480582 + MIR SINE MIR 2 253 -9 21 71 0 0 chrX 80493614 80493656 -96480484 + AT_rich Low_complexity Low_complexity 1 42 0 24 85 0 0 chrX 80493761 80493820 -96480320 + AT_rich Low_complexity Low_complexity 1 59 0 294 252 97 29 chrX 80495207 80495310 -96478830 + MIR3 SINE MIR 94 203 -5 854 288 46 0 chrX 80495374 80495593 -96478547 + MIR SINE MIR 5 233 -29 2071 146 40 3 chrX 80495828 80496205 -96477935 + L1MA5A LINE L1 5902 6292 -5 21 57 0 0 chrX 80496205 80496240 -96477900 + AT_rich Low_complexity Low_complexity 1 35 0 251 194 101 93 chrX 80496455 80496584 -96477556 + MLT1E1 LTR MaLR 117 246 -408 * 1202 239 14 58 chrX 80496485 80496779 -96477361 + MLT2D LTR ERVL 82 360 -54 441 36 0 0 chrX 80496779 80496834 -96477306 + (TG)n Simple_repeat Simple_repeat 2 56 0 1202 239 14 58 chrX 80496834 80496887 -96477253 + MLT2D LTR ERVL 360 414 0 1993 158 22 8 chrX 80497459 80497820 -96476320 + MER47A DNA MER2_type 1 366 0 1686 226 100 28 chrX 80498359 80498820 -96475320 - MLT1D LTR MaLR 0 505 12 1936 80 59 17 chrX 80498842 80499131 -96475009 - L1PA16 LINE L1 -2 6164 5864 2082 162 50 28 chrX 80499136 80499679 -96474461 - MLT2A2 LTR ERVL 0 554 1 911 99 23 0 chrX 80499680 80499811 -96474329 - HERVL-A2 LTR ERVL -1 5653 5520 1830 122 27 111 chrX 80500100 80500468 -96473672 - MER1B DNA MER1_type 0 337 1 688 264 151 9 chrX 80500510 80500722 -96473418 + MIR SINE MIR 21 262 0 4476 131 26 12 chrX 80500986 80501751 -96472389 + L1MC1 LINE L1 5558 6333 0 25 0 0 0 chrX 80504639 80504664 -96469476 + AT_rich Low_complexity Low_complexity 1 25 0 705 188 30 0 chrX 80504664 80504797 -96469343 + MLT1E2 LTR MaLR 490 626 0 11850 179 38 10 chrX 80504891 80510221 -96463919 - L1PBa LINE L1 -1331 5531 1 4575 179 26 4 chrX 80510243 80511163 -96462977 + L1 LINE L1 3769 4708 -1438 2464 123 7 19 chrX 80511163 80511578 -96462562 + L1MA3 LINE L1 5889 6305 0 1466 90 70 4 chrX 80512878 80513122 -96461018 + L1MA9 LINE L1 6053 6312 0 23 0 0 0 chrX 80513281 80513304 -96460836 + AT_rich Low_complexity Low_complexity 1 23 0 2728 123 8 47 chrX 80513868 80514074 -96460066 - L1P4 LINE L1 -483 5685 5473 2121 114 0 3 chrX 80514074 80514372 -96459768 - AluSx SINE Alu -15 297 1 2728 123 8 47 chrX 80514372 80514823 -96459317 - L1P4 LINE L1 -695 5473 5041 3223 80 2 0 chrX 80514823 80515262 -96458878 + L1PA13 LINE L1 5717 6156 -7 26 30 0 0 chrX 80515342 80515375 -96458765 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chrX 80515406 80515445 -96458695 + AT_rich Low_complexity Low_complexity 1 39 0 270 0 0 0 chrX 80515451 80515481 -96458659 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 387 0 0 0 chrX 80515480 80515523 -96458617 + (TG)n Simple_repeat Simple_repeat 2 44 0 192 40 0 0 chrX 80516095 80516120 -96458020 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 288 331 162 7 chrX 80516291 80516445 -96457695 + MER5B DNA MER1_type 1 178 0 1225 190 0 0 chrX 80517549 80517816 -96456324 + AluJb SINE Alu 86 312 0 307 353 154 5 chrX 80517845 80518046 -96456094 - L1M4 LINE L1 -1898 4248 4018 432 271 68 11 chrX 80518050 80518227 -96455913 + L1ME4a LINE L1 5671 5857 -264 546 222 25 49 chrX 80518230 80518392 -96455748 + L1ME4a LINE L1 5960 6117 -4 473 93 0 70 chrX 80518629 80518715 -96455425 + MADE1 DNA Mariner 1 80 0 345 47 0 0 chrX 80519199 80519242 -96454898 + (CA)n Simple_repeat Simple_repeat 2 44 0 392 382 27 23 chrX 80519463 80519722 -96454418 - L2 LINE L2 -495 2819 2560 591 312 68 17 chrX 80519742 80519979 -96454161 + MIR SINE MIR 14 262 0 687 339 86 29 chrX 80519985 80520685 -96453455 - L2 LINE L2 -769 2545 1806 23 0 0 0 chrX 80521111 80521134 -96453006 + AT_rich Low_complexity Low_complexity 1 23 0 245 331 50 36 chrX 80521464 80521654 -96452486 + MIR3 SINE MIR 5 196 -66 353 356 34 13 chrX 80521672 80521888 -96452252 - MIR SINE MIR -21 241 18 7377 96 8 6 chrX 80522293 80523359 -96450781 + HERVL-A2 LTR ERVL 4545 5654 0 2206 146 61 28 chrX 80523363 80523867 -96450273 + MLT2A2 LTR ERVL 5 546 -8 294 266 40 65 chrX 80523954 80524078 -96450062 - MIR SINE MIR -112 150 30 250 365 39 10 chrX 80524197 80524301 -96449839 + MIR SINE MIR 30 136 -72 306 243 90 36 chrX 80524619 80524730 -96449410 + MIR SINE MIR 90 206 -56 267 337 166 5 chrX 80524739 80524932 -96449208 - MIR SINE MIR -11 251 28 268 241 0 0 chrX 80524963 80525021 -96449119 + L2 LINE L2 3211 3268 -4 217 329 38 0 chrX 80526173 80526252 -96447888 + MIR SINE MIR 178 259 -3 * 346 218 10 89 chrX 80526240 80526341 -96447799 + MIR3 SINE MIR 98 190 -18 1636 153 28 25 chrX 80526475 80526757 -96447383 + AluJb SINE Alu 6 288 -24 400 169 52 7 chrX 80526900 80527036 -96447104 + (TA)n Simple_repeat Simple_repeat 1 142 0 191 94 57 19 chrX 80527108 80527161 -96446979 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chrX 80529040 80529061 -96445079 + AT_rich Low_complexity Low_complexity 1 21 0 699 12 0 0 chrX 80529463 80529546 -96444594 + AluY SINE Alu 217 299 -12 849 87 0 6 chrX 80529940 80530189 -96443951 + AluSx SINE Alu 1 294 -15 235 350 135 23 chrX 80530324 80530767 -96443373 - L2 LINE L2 -384 2930 2438 306 0 0 0 chrX 80530847 80530881 -96443259 + (CA)n Simple_repeat Simple_repeat 2 35 0 183 80 0 0 chrX 80530936 80530961 -96443179 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chrX 80532178 80532206 -96441934 + AT_rich Low_complexity Low_complexity 1 28 0 2088 117 20 0 chrX 80533281 80533580 -96440560 + AluSx SINE Alu 1 305 -7 27 0 0 0 chrX 80533668 80533695 -96440445 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chrX 80534202 80534226 -96439914 + AT_rich Low_complexity Low_complexity 1 24 0 1706 151 0 33 chrX 80534226 80534525 -96439615 - AluSx SINE Alu -23 289 1 2585 51 0 0 chrX 80535893 80536204 -96437936 - AluY SINE Alu 0 311 1 21 82 0 0 chrX 80536292 80536341 -96437799 + AT_rich Low_complexity Low_complexity 1 49 0 2465 80 0 3 chrX 80538673 80538986 -96435154 - AluSx SINE Alu 0 312 1 2530 37 0 0 chrX 80539076 80539370 -96434770 - AluY SINE Alu -17 294 1 21 0 0 0 chrX 80540518 80540539 -96433601 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chrX 80541416 80541449 -96432691 + AT_rich Low_complexity Low_complexity 1 33 0 183 80 0 0 chrX 80544028 80544053 -96430087 + (TTC)n Simple_repeat Simple_repeat 1 25 0 38 39 0 0 chrX 80546148 80546200 -96427940 + AT_rich Low_complexity Low_complexity 1 52 0 378 335 73 43 chrX 80546271 80546435 -96427705 + MIR3 SINE MIR 30 198 -10 1547 133 0 27 chrX 80546514 80546777 -96427363 - L1PB1 LINE L1 -1 6150 5895 186 103 0 0 chrX 80547154 80547183 -96426957 + (T)n Simple_repeat Simple_repeat 1 29 0 2404 47 3 31 chrX 80547315 80547635 -96426505 + AluY SINE Alu 1 311 0 345 47 0 0 chrX 80547851 80547894 -96426246 + (CA)n Simple_repeat Simple_repeat 2 44 0 780 237 9 24 chrX 80549503 80549714 -96424426 - MER3 DNA MER1_type 0 209 2 190 315 0 19 chrX 80550406 80550460 -96423680 + L2 LINE L2 3220 3272 0 558 351 12 0 chrX 80553382 80553550 -96420590 - MIR3 SINE MIR -9 199 30 14229 188 30 15 chrX 80556096 80558514 -96415626 + L1M1 LINE L1 15 2394 -5171 297 0 0 0 chrX 80558514 80558547 -96415593 + (CA)n Simple_repeat Simple_repeat 2 34 0 14229 188 30 15 chrX 80558547 80560865 -96413275 + L1M1 LINE L1 2394 5116 -2449 1393 270 36 43 chrX 80560889 80561568 -96412572 + L1P3 LINE L1 2 787 -5088 12648 135 23 38 chrX 80561570 80563841 -96410299 + L1P4 LINE L1 3279 5582 -586 565 136 0 11 chrX 80563841 80563929 -96410211 + THE1B LTR MaLR 278 364 0 10048 122 14 30 chrX 80563929 80565536 -96408604 + THE1B-int LTR MaLR 1 1580 0 2368 111 17 14 chrX 80565538 80565899 -96408241 + THE1B LTR MaLR 3 364 0 12648 135 23 38 chrX 80565899 80566094 -96408046 + L1P4 LINE L1 5582 5791 -377 2197 102 3 7 chrX 80616422 80616727 -96357413 - AluSx SINE Alu -8 304 1 3973 164 20 0 chrX 80617448 80618137 -96356003 - L1PA16 LINE L1 -2 6164 5462 319 364 52 13 chrX 80618508 80618662 -96355478 - MIR3 SINE MIR -14 194 35 12673 139 12 73 chrX 80619462 80619635 -96354505 - Tigger1 DNA MER2_type -1 2417 2235 11304 35 0 1 chrX 80619635 80621771 -96352369 + L1PA4 LINE L1 4022 6155 0 12673 139 12 73 chrX 80621771 80623888 -96350252 - Tigger1 DNA MER2_type -183 2235 -9 1252 104 10 0 chrX 80623888 80624089 -96350051 + L1MA2 LINE L1 6102 6304 0 12673 139 12 73 chrX 80624089 80624143 -96349997 - Tigger1 DNA MER2_type -2427 4294967287 238 1699 157 7 28 chrX 80624143 80624430 -96349710 + AluSx SINE Alu 5 285 -27 12673 139 12 73 chrX 80624430 80624656 -96349484 - Tigger1 DNA MER2_type -2179 239 1 324 366 6 22 chrX 80625193 80625376 -96348764 - MARNA DNA Mariner -398 188 9 1638 190 30 3 chrX 80625712 80626012 -96348128 + L1PA13 LINE L1 2 309 -6478 * 1906 251 16 0 chrX 80626000 80626487 -96347653 + L1P LINE L1 2551 3045 -3101 20801 144 18 13 chrX 80626491 80632051 -96342089 + L1PA13 LINE L1 339 5990 -807 5916 106 12 2 chrX 80632050 80632915 -96341225 + L1PA13 LINE L1 5266 6138 -25 * 1143 184 40 0 chrX 80632915 80633143 -96340997 + MER58B DNA MER1_type 90 326 -15 21 0 0 0 chrX 80634717 80634738 -96339402 + AT_rich Low_complexity Low_complexity 1 21 0 970 265 109 3 chrX 80635109 80635422 -96338718 + L2 LINE L2 2556 2901 -413 2209 104 0 0 chrX 80636696 80636983 -96337157 - AluSc SINE Alu -22 287 1 7898 158 15 6 chrX 80637075 80639581 -96334559 - L1MA2 LINE L1 0 7723 5194 1291 187 39 4 chrX 80639598 80639828 -96334312 - AluJb SINE Alu -73 239 2 9410 174 20 13 chrX 80639829 80643027 -96331113 - L1MA2 LINE L1 -2360 5205 1983 2104 144 30 25 chrX 80643027 80643389 -96330751 + THE1B LTR MaLR 1 364 0 2742 71 11 0 chrX 80643389 80643753 -96330387 + THE1B-int LTR MaLR 1 368 -1212 285 29 0 0 chrX 80643755 80643789 -96330351 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 5999 99 20 16 chrX 80643789 80644733 -96329407 - L1PA8 LINE L1 -24 6148 5199 4318 125 16 0 chrX 80644722 80645346 -96328794 + THE1B-int LTR MaLR 350 983 -597 * 283 75 0 0 chrX 80645338 80645378 -96328762 + THE1B-int LTR MaLR 1541 1580 0 * 2177 143 34 14 chrX 80645378 80645734 -96328406 + THE1B LTR MaLR 1 363 -1 450 219 0 0 chrX 80645762 80645844 -96328296 - L1MA2 LINE L1 -5656 1909 1828 8771 190 40 10 chrX 80645853 80647490 -96326650 - L1MA2 LINE L1 -5859 1706 21 1102 146 9 9 chrX 80647695 80647908 -96326232 - L1MA4A LINE L1 -1 6302 6090 2208 112 3 0 chrX 80648413 80648707 -96325433 + AluSg SINE Alu 1 295 -15 28 0 0 0 chrX 80648876 80648904 -96325236 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chrX 80648931 80648963 -96325177 + AT_rich Low_complexity Low_complexity 1 32 0 2189 99 3 13 chrX 80649358 80649662 -96324478 - AluSg1 SINE Alu -8 301 1 26 0 0 0 chrX 80650835 80650861 -96323279 + AT_rich Low_complexity Low_complexity 1 26 0 184 290 43 43 chrX 80651896 80651989 -96322151 - L2 LINE L2 -50 3263 3171 2198 106 3 0 chrX 80652382 80652675 -96321465 + AluSx SINE Alu 1 294 -18 763 272 30 5 chrX 80652782 80652984 -96321156 - MER63A DNA MER1_type -3 207 1 5539 63 21 18 chrX 80655438 80656202 -96317938 - MER4E LTR ERV1 0 766 1 25 51 0 0 chrX 80656356 80656395 -96317745 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chrX 80656424 80656460 -96317680 + AT_rich Low_complexity Low_complexity 1 36 0 2169 108 3 3 chrX 80656492 80656799 -96317341 - AluSq SINE Alu -6 307 1 658 233 14 20 chrX 80657187 80657333 -96316807 + MIR SINE MIR 4 148 -114 197 339 34 42 chrX 80657382 80657500 -96316640 + L2 LINE L2 3192 3308 -5 408 236 9 0 chrX 80658514 80658620 -96315520 + L1MB7 LINE L1 6066 6172 -12 2284 89 7 0 chrX 80660299 80660590 -96313550 - AluSg SINE Alu -14 296 4 312 364 0 8 chrX 80660678 80660799 -96313341 - MIR SINE MIR -109 153 34 2583 65 3 0 chrX 80661264 80661574 -96312566 + AluSp SINE Alu 2 312 -1 5839 84 19 12 chrX 80662288 80663431 -96310709 - L1PA13 LINE L1 -2 6161 4980 805 225 17 12 chrX 80664963 80665136 -96309004 + L1PB4 LINE L1 5980 6153 -3 22 0 0 0 chrX 80665356 80665378 -96308762 + AT_rich Low_complexity Low_complexity 1 22 0 261 233 48 78 chrX 80666015 80666118 -96308022 - MIR SINE MIR -56 206 107 5971 182 25 7 chrX 80667052 80668510 -96305630 - L1PA15 LINE L1 -3 6813 5298 180 97 0 0 chrX 80668510 80668541 -96305599 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5971 182 25 7 chrX 80668541 80669258 -96304882 - L1PA15 LINE L1 -1518 5298 4595 6654 43 12 0 chrX 80669258 80670074 -96304066 + L1PA7 LINE L1 5329 6154 0 3310 281 27 6 chrX 80670099 80671002 -96303138 - L1PA15 LINE L1 -4818 1969 1048 880 217 4 76 chrX 80671082 80671213 -96302927 - L1ME2 LINE L1 -16 6148 6044 405 0 0 0 chrX 80671213 80671258 -96302882 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 880 217 4 76 chrX 80671258 80671389 -96302751 - L1ME2 LINE L1 -120 6044 5905 13404 172 33 48 chrX 80671869 80673552 -96300588 - L1MA2 LINE L1 -450 7273 5568 1974 145 3 0 chrX 80673552 80673842 -96300298 + AluSx SINE Alu 2 292 -20 13404 172 33 48 chrX 80673842 80675285 -96298855 - L1MA2 LINE L1 -2155 5568 4106 2117 127 0 0 chrX 80675285 80675569 -96298571 - AluSx SINE Alu -28 284 1 13404 172 33 48 chrX 80675569 80676422 -96297718 - L1MA2 LINE L1 -3617 4106 3242 1979 147 0 14 chrX 80676422 80676715 -96297425 - AluSx SINE Alu -23 289 1 13404 172 33 48 chrX 80676715 80677529 -96296611 - L1MA2 LINE L1 -4481 3242 2418 2190 109 0 23 chrX 80677529 80677833 -96296307 - AluSg SINE Alu -12 298 2 13404 172 33 48 chrX 80677833 80680111 -96294029 - L1MA2 LINE L1 -5305 2418 11 327 383 10 31 chrX 80681976 80682169 -96291971 - MER5A DNA MER1_type 0 189 1 265 274 86 26 chrX 80682491 80682608 -96291532 - MIR SINE MIR -66 196 73 412 330 27 0 chrX 80683785 80683897 -96290243 - L2 LINE L2 -2 3270 3156 182 365 16 0 chrX 80683968 80684031 -96290109 + L2 LINE L2 3205 3268 -4 188 466 0 8 chrX 80684048 80684181 -96289959 + MIR SINE MIR 16 147 -61 507 33 0 0 chrX 80684335 80684396 -96289744 + (GGAA)n Simple_repeat Simple_repeat 3 63 0 645 158 88 0 chrX 80685784 80685898 -96288242 - MLT1D LTR MaLR -22 483 360 772 263 29 10 chrX 80685932 80686137 -96288003 - MER82 DNA MER2_type -1 652 444 327 338 45 25 chrX 80686168 80686369 -96287771 + MIR SINE MIR 1 205 -57 393 250 0 21 chrX 80686389 80686485 -96287655 - MER82 DNA MER2_type -559 94 1 1505 226 83 37 chrX 80686596 80687079 -96287061 + MLT1D LTR MaLR 1 505 0 2755 171 38 6 chrX 80687316 80687841 -96286299 - MER34 LTR ERV1 0 542 1 239 158 49 85 chrX 80687866 80687948 -96286192 + MER69 DNA AcHobo 67 145 -2381 260 224 0 0 chrX 80687974 80688032 -96286108 + MER69 DNA AcHobo 2469 2526 0 369 131 0 0 chrX 80688437 80688498 -96285642 + (CA)n Simple_repeat Simple_repeat 2 62 0 613 306 5 24 chrX 80688681 80688887 -96285253 - MIR SINE MIR -48 214 13 2046 115 3 10 chrX 80690548 80690865 -96283275 + AluSg SINE Alu 1 310 0 2131 99 34 0 chrX 80691005 80691298 -96282842 + AluSp SINE Alu 1 303 -10 653 261 147 8 chrX 80691715 80692039 -96282101 - MER57A LTR ERV1 -4 399 60 238 338 12 0 chrX 80692034 80692114 -96282026 - MER93a LTR ERV1 -321 81 1 * 1187 215 56 34 chrX 80692561 80692884 -96281256 + MER33 DNA MER1_type 1 316 -8 218 167 37 0 chrX 80692982 80693036 -96281104 + A-rich Low_complexity Low_complexity 1 56 0 3809 93 50 32 chrX 80693500 80693829 -96280311 - LTR66 LTR ERVL 0 610 264 2084 113 13 3 chrX 80693829 80694131 -96280009 - AluSp SINE Alu -8 305 1 3809 93 50 32 chrX 80694131 80694400 -96279740 - LTR66 LTR ERVL -346 264 1 204 125 57 11 chrX 80694645 80694733 -96279407 + (TA)n Simple_repeat Simple_repeat 1 92 0 189 0 0 0 chrX 80695666 80695687 -96278453 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 2443 92 0 0 chrX 80696257 80696561 -96277579 - AluSq SINE Alu -8 305 2 5644 68 14 14 chrX 80698159 80698925 -96275215 - MER4E LTR ERV1 0 766 1 1468 162 17 70 chrX 80699086 80699450 -96274690 - MER4A LTR ERV1 0 664 262 529 143 22 11 chrX 80699452 80699543 -96274597 - MER4A LTR ERV1 -572 92 1 2114 150 66 17 chrX 80699545 80699952 -96274188 + MSTA LTR MaLR 2 428 0 333 0 0 0 chrX 80700873 80700910 -96273230 + (TG)n Simple_repeat Simple_repeat 2 38 0 24 32 0 0 chrX 80700910 80700941 -96273199 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chrX 80702155 80702188 -96271952 + AT_rich Low_complexity Low_complexity 1 33 0 387 60 0 0 chrX 80703161 80703211 -96270929 + (TG)n Simple_repeat Simple_repeat 2 51 0 2017 127 41 39 chrX 80703245 80703608 -96270532 - THE1B LTR MaLR 0 364 1 1539 179 35 7 chrX 80703869 80704159 -96269981 + AluJo SINE Alu 3 300 -12 213 208 13 52 chrX 80704408 80704463 -96269677 + (TA)n Simple_repeat Simple_repeat 2 55 -20 1297 193 83 31 chrX 80704463 80704790 -96269350 + MER2 DNA MER2_type 1 344 0 213 208 13 52 chrX 80704790 80704811 -96269329 + (TA)n Simple_repeat Simple_repeat 55 75 0 22 0 0 0 chrX 80705135 80705157 -96268983 + AT_rich Low_complexity Low_complexity 1 22 0 2337 97 3 6 chrX 80705368 80705679 -96268461 - AluSp SINE Alu -3 310 1 24 0 0 0 chrX 80706830 80706854 -96267286 + AT_rich Low_complexity Low_complexity 1 24 0 3364 62 0 7 chrX 80706972 80707423 -96266717 - LTR7 LTR ERV1 -2 448 1 2343 83 67 16 chrX 80707423 80707796 -96266344 - HERVH LTR ERV1 0 7713 7322 1438 110 18 9 chrX 80707794 80708012 -96266128 - HERVH LTR ERV1 -1894 5819 5600 * 4168 149 11 1 chrX 80708013 80708669 -96265471 - HERVH LTR ERV1 -2564 5149 4488 3296 117 4 6 chrX 80708671 80709174 -96264966 - HERVH LTR ERV1 -3720 3993 3492 848 151 20 0 chrX 80709166 80709312 -96264828 - HERVH LTR ERV1 -4425 3288 3140 * 15807 105 37 9 chrX 80709306 80712167 -96261973 - HERVH LTR ERV1 -4726 2987 1 3192 52 2 71 chrX 80712169 80712650 -96261490 - LTR7 LTR ERV1 -2 448 1 246 269 169 50 chrX 80712729 80712889 -96261251 - L1MC/D LINE L1 -2016 5792 5614 3275 124 53 50 chrX 80713504 80714108 -96260032 + MER4B LTR ERV1 5 610 0 1630 72 5 5 chrX 80714187 80714394 -96259746 + AluSp SINE Alu 1 207 -106 1875 72 0 0 chrX 80714395 80714630 -96259510 + MER4E LTR ERV1 532 766 0 2989 144 29 108 chrX 80715639 80715835 -96258305 - LTR8 LTR ERV1 0 691 481 2019 100 50 11 chrX 80715835 80716116 -96258024 + AluSx SINE Alu 1 292 -20 2989 144 29 108 chrX 80716116 80716669 -96257471 - LTR8 LTR ERV1 -210 481 1 556 122 260 8 chrX 80717120 80717243 -96256897 - MER4C LTR ERV1 -21 444 291 1132 162 139 32 chrX 80717300 80717609 -96256531 - MER4A LTR ERV1 -322 342 1 279 0 0 0 chrX 80717952 80717983 -96256157 + (A)n Simple_repeat Simple_repeat 1 31 0 24 32 0 0 chrX 80718218 80718249 -96255891 + AT_rich Low_complexity Low_complexity 1 31 0 391 288 76 0 chrX 80718334 80718452 -96255688 - MIR3 SINE MIR -25 183 57 2360 46 3 3 chrX 80718480 80718788 -96255352 - AluY SINE Alu 0 308 1 1810 100 93 4 chrX 80721555 80721838 -96252302 - AluSx SINE Alu 0 308 3 1955 221 69 41 chrX 80722157 80722696 -96251444 - MLT2B3 LTR ERVL 0 554 1 180 77 0 0 chrX 80723300 80723326 -96250814 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1697 173 3 7 chrX 80723330 80723619 -96250521 - AluJo SINE Alu -24 288 1 26 0 0 0 chrX 80723622 80723648 -96250492 + AT_rich Low_complexity Low_complexity 1 26 0 295 403 0 0 chrX 80723704 80723843 -96250297 + MIR3 SINE MIR 64 202 -6 2012 114 7 3 chrX 80723891 80724181 -96249959 + AluSq SINE Alu 6 296 -17 2714 39 0 0 chrX 80725463 80725772 -96248368 - AluY SINE Alu -2 309 1 202 147 53 53 chrX 80725792 80725849 -96248291 + (TTAA)n Simple_repeat Simple_repeat 1 60 -15 1918 145 7 3 chrX 80725849 80726138 -96248002 - AluJb SINE Alu -22 290 1 202 147 53 53 chrX 80726138 80726155 -96247985 + (TTAA)n Simple_repeat Simple_repeat 59 75 0 25 75 0 0 chrX 80726381 80726434 -96247706 + AT_rich Low_complexity Low_complexity 1 53 0 2364 87 0 0 chrX 80726879 80727188 -96246952 - AluSg1 SINE Alu 0 309 1 2311 97 3 3 chrX 80727874 80728182 -96245958 - AluSx SINE Alu 0 312 5 1579 79 0 0 chrX 80728449 80728662 -96245478 - AluSc SINE Alu 0 305 93 2237 108 10 0 chrX 80728706 80729012 -96245128 - AluSq SINE Alu -4 309 1 2088 116 0 0 chrX 80729393 80729677 -96244463 + AluSx SINE Alu 9 292 -20 330 333 47 0 chrX 80730093 80730222 -96243918 + L2 LINE L2 2098 2232 -1082 677 324 124 26 chrX 80730222 80730847 -96243293 + L2 LINE L2 2358 3066 -247 579 259 60 88 chrX 80730925 80730995 -96243145 - MER102b DNA MER1_type -1087 341 271 2121 122 7 0 chrX 80730995 80731291 -96242849 + AluSp SINE Alu 1 298 -15 579 259 60 88 chrX 80731291 80731571 -96242569 - MER102b DNA MER1_type -1157 271 1 624 253 32 7 chrX 80731577 80731731 -96242409 + L2 LINE L2 3156 3313 0 1258 77 0 0 chrX 80732379 80732547 -96241593 - L1PA5 LINE L1 0 6154 5987 2225 97 0 0 chrX 80732575 80732889 -96241251 + AluSq SINE Alu 1 284 -29 2231 114 7 0 chrX 80733061 80733368 -96240772 + AluSp SINE Alu 3 311 -2 30 59 0 0 chrX 80733368 80733419 -96240721 + AT_rich Low_complexity Low_complexity 1 51 0 270 0 0 0 chrX 80733441 80733471 -96240669 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chrX 80733517 80733539 -96240601 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 80733925 80733955 -96240185 + AT_rich Low_complexity Low_complexity 1 30 0 2160 116 0 7 chrX 80734251 80734553 -96239587 - AluSg SINE Alu -10 300 1 2158 110 0 7 chrX 80735131 80735431 -96238709 - AluSx SINE Alu -14 298 1 26 30 0 0 chrX 80735469 80735502 -96238638 + AT_rich Low_complexity Low_complexity 1 33 0 2141 93 4 4 chrX 80735843 80736123 -96238017 + AluSg SINE Alu 1 280 -30 1112 295 86 26 chrX 80736149 80736640 -96237500 - MER34 LTR ERV1 -18 524 5 219 139 0 0 chrX 80736697 80736733 -96237407 + (CA)n Simple_repeat Simple_repeat 1 36 0 2360 72 7 16 chrX 80737097 80737402 -96236738 + AluSp SINE Alu 1 302 -11 4606 68 54 31 chrX 80738161 80738722 -96235418 - PABL_A LTR ERV1 0 660 114 2479 64 0 40 chrX 80738722 80739048 -96235092 + AluSq SINE Alu 1 313 0 2267 84 0 17 chrX 80739054 80739353 -96234787 + AluSc SINE Alu 1 294 -15 684 67 0 0 chrX 80739353 80739443 -96234697 + (TA)n Simple_repeat Simple_repeat 2 91 0 4606 68 54 31 chrX 80739443 80739518 -96234622 - PABL_A LTR ERV1 -549 111 1 24 53 0 0 chrX 80739774 80739812 -96234328 + AT_rich Low_complexity Low_complexity 1 38 0 2164 102 7 0 chrX 80740091 80740396 -96233744 - AluSp SINE Alu -6 307 1 3685 98 21 70 chrX 80740521 80741152 -96232988 - MER4A LTR ERV1 0 600 1 3578 109 57 0 chrX 80741249 80741773 -96232367 - MER41A LTR ERV1 0 554 1 318 87 0 0 chrX 80742474 80742520 -96231620 + (TG)n Simple_repeat Simple_repeat 1 46 0 783 250 69 5 chrX 80742911 80743127 -96231013 - L2 LINE L2 -280 3033 2804 1106 235 27 14 chrX 80743145 80743439 -96230701 + MER58B DNA MER1_type 44 341 0 537 276 0 47 chrX 80743446 80743616 -96230524 - L2 LINE L2 -507 2807 2646 986 186 12 0 chrX 80743714 80743886 -96230254 - FAM SINE Alu 0 175 2 1532 143 10 45 chrX 80744258 80744572 -96229568 - L1MB8 LINE L1 -15 6163 5861 3272 91 9 2 chrX 80744577 80745039 -96229101 - L1PA10 LINE L1 -2 6166 5702 221 169 15 31 chrX 80745188 80745253 -96228887 + A-rich Low_complexity Low_complexity 1 64 0 2153 93 42 3 chrX 80745992 80746281 -96227859 - AluSg SINE Alu 0 310 11 230 286 18 18 chrX 80746857 80746969 -96227171 + (TA)n Simple_repeat Simple_repeat 2 113 0 21 0 0 0 chrX 80748369 80748390 -96225750 + AT_rich Low_complexity Low_complexity 1 21 0 2108 94 3 66 chrX 80748888 80749100 -96225040 - AluSp SINE Alu -15 298 111 282 95 0 0 chrX 80749100 80749142 -96224998 + (CA)n Simple_repeat Simple_repeat 1 42 0 2108 94 3 66 chrX 80749142 80749247 -96224893 - AluSp SINE Alu -202 111 1 305 223 11 0 chrX 80749588 80749682 -96224458 + (CA)n Simple_repeat Simple_repeat 2 96 0 1530 198 3 14 chrX 80749720 80750003 -96224137 + AluJb SINE Alu 1 280 -32 7481 100 5 4 chrX 80750005 80751029 -96223111 + THE1A-int LTR MaLR 556 1580 0 2453 91 3 0 chrX 80751029 80751359 -96222781 + THE1A LTR MaLR 1 331 -24 22 0 0 0 chrX 80752306 80752328 -96221812 + AT_rich Low_complexity Low_complexity 1 22 0 2145 121 0 0 chrX 80753442 80753740 -96220400 + AluSx SINE Alu 1 298 -14 198 0 0 0 chrX 80753838 80753860 -96220280 + (TTA)n Simple_repeat Simple_repeat 1 22 0 293 139 0 14 chrX 80754525 80754597 -96219543 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 755 177 11 17 chrX 80754602 80754783 -96219357 + CT-rich Low_complexity Low_complexity 1 180 0 1142 103 11 0 chrX 80754784 80754959 -96219181 + (TTTC)n Simple_repeat Simple_repeat 1 177 0 2078 100 17 3 chrX 80754977 80755268 -96218872 - AluSx SINE Alu -17 295 1 23 33 0 0 chrX 80755367 80755397 -96218743 + AT_rich Low_complexity Low_complexity 1 30 0 227 152 0 0 chrX 80755504 80755550 -96218590 - LTR66 LTR ERVL -171 439 394 333 47 0 0 chrX 80756156 80756199 -96217941 + (TC)n Simple_repeat Simple_repeat 2 44 0 303 175 0 0 chrX 80756200 80756257 -96217883 + (TATG)n Simple_repeat Simple_repeat 2 58 0 2987 251 29 23 chrX 80756324 80757228 -96216912 - L1ME1 LINE L1 -1 6165 5257 1143 261 123 20 chrX 80757309 80757911 -96216229 - L1ME1 LINE L1 -1465 4681 3937 2366 74 0 0 chrX 80757911 80758234 -96215906 - AluY SINE Alu 0 311 1 1143 261 123 20 chrX 80758234 80758333 -96215807 - L1ME1 LINE L1 -2209 3937 3850 21 0 0 0 chrX 80759139 80759160 -96214980 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chrX 80759435 80759480 -96214660 + AT_rich Low_complexity Low_complexity 1 45 0 360 59 0 0 chrX 80759494 80759545 -96214595 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2171 84 42 0 chrX 80759545 80759820 -96214320 - AluSx SINE Alu -22 290 1 225 0 0 0 chrX 80760072 80760097 -96214043 + (CA)n Simple_repeat Simple_repeat 2 26 0 3835 131 71 46 chrX 80761165 80761929 -96212211 + LTR1 LTR ERV1 1 783 -2 1120 236 96 119 chrX 80762136 80762352 -96211788 + L2 LINE L2 2374 2593 -720 2279 74 0 7 chrX 80762352 80762649 -96211491 - AluY SINE Alu -15 296 2 1120 236 96 119 chrX 80762649 80763393 -96210747 + L2 LINE L2 2593 3313 0 26 74 0 0 chrX 80764513 80764567 -96209573 + AT_rich Low_complexity Low_complexity 1 54 0 2145 118 0 3 chrX 80764655 80764959 -96209181 + AluSq SINE Alu 1 303 -10 1525 140 0 0 chrX 80765036 80765258 -96208882 + AluSg/x SINE Alu 87 308 -4 2225 95 0 0 chrX 80765372 80765656 -96208484 - AluSc SINE Alu -25 284 1 26 50 0 0 chrX 80766124 80766164 -96207976 + AT_rich Low_complexity Low_complexity 1 40 0 1610 155 167 16 chrX 80766361 80766793 -96207347 - LTR54B LTR ERV1 -1 497 1 204 97 0 0 chrX 80766802 80766833 -96207307 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5663 118 11 22 chrX 80766880 80767850 -96206290 - L1PB1 LINE L1 0 6867 5911 * 14078 128 109 8 chrX 80767831 80768912 -96205228 - L1PB1 LINE L1 -4152 2711 1740 2253 117 0 0 chrX 80768912 80769210 -96204930 - AluSx SINE Alu -12 300 3 14078 128 109 8 chrX 80769210 80770590 -96203550 - L1PB1 LINE L1 -5123 1740 2 2362 120 5 35 chrX 80771425 80771800 -96202340 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 80772820 80772841 -96201299 + AT_rich Low_complexity Low_complexity 1 21 0 1479 216 14 7 chrX 80773336 80773632 -96200508 + AluJo SINE Alu 1 298 -14 1557 193 0 0 chrX 80774714 80774968 -96199172 - AluJb SINE Alu -58 254 1 1463 180 88 11 chrX 80775001 80775285 -96198855 + AluJb SINE Alu 5 310 -2 514 321 65 0 chrX 80775401 80775585 -96198555 - MIR3 SINE MIR -5 203 8 246 234 0 0 chrX 80776412 80776459 -96197681 - L2 LINE L2 -9 3263 3217 337 259 21 159 chrX 80776529 80776718 -96197422 - L2 LINE L2 -55 3217 3055 1220 175 20 123 chrX 80777305 80777499 -96196641 - AluJo SINE Alu -5 307 161 2328 105 0 0 chrX 80777499 80777812 -96196328 - AluSq SINE Alu 0 313 1 1220 175 20 123 chrX 80777812 80777959 -96196181 - AluJo SINE Alu -151 161 1 223 180 0 0 chrX 80778046 80778084 -96196056 - MIR SINE MIR -63 145 111 293 259 47 12 chrX 80778129 80778214 -96195926 - MER5B DNA MER1_type -2 176 89 1365 221 13 22 chrX 80778218 80778320 -96195820 - L1M4 LINE L1 -1439 4707 4606 1983 136 17 3 chrX 80778320 80778615 -96195525 - AluSx SINE Alu -13 299 1 1365 221 13 22 chrX 80778615 80779196 -96194944 - L1M4 LINE L1 -1540 4606 3947 1180 127 23 0 chrX 80779241 80779414 -96194726 - FRAM SINE Alu -4 172 1 1847 166 20 3 chrX 80780565 80780867 -96193273 + AluJb SINE Alu 3 309 -3 2313 95 0 3 chrX 80781834 80782130 -96192010 - AluSp SINE Alu -18 295 1 213 65 0 0 chrX 80782455 80782486 -96191654 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 198 0 0 0 chrX 80782613 80782635 -96191505 + (TG)n Simple_repeat Simple_repeat 2 23 0 205 337 20 50 chrX 80782830 80782931 -96191209 - MIR3 SINE MIR -103 105 8 1808 171 0 7 chrX 80783839 80784132 -96190008 - AluSx SINE Alu -21 291 1 210 252 29 19 chrX 80784643 80784746 -96189394 + (TA)n Simple_repeat Simple_repeat 1 104 0 506 265 95 16 chrX 80786658 80786847 -96187293 + L2 LINE L2 1843 2046 -1268 2262 169 32 28 chrX 80887799 80888266 -96085874 - L1MC3 LINE L1 -21 7764 7296 1831 161 0 35 chrX 80888983 80889120 -96085020 + AluJo SINE Alu 1 141 -171 2260 88 0 7 chrX 80889120 80889416 -96084724 + AluY SINE Alu 1 294 -17 1831 161 0 35 chrX 80889416 80889594 -96084546 + AluJo SINE Alu 141 305 -7 31 0 0 0 chrX 80889762 80889793 -96084347 + AT_rich Low_complexity Low_complexity 1 31 0 2059 92 33 0 chrX 80889797 80890123 -96084017 + AluSc SINE Alu 1 335 0 1867 193 25 3 chrX 80890705 80891063 -96083077 + MLT2D LTR ERVL 1 366 -48 540 172 15 26 chrX 80891063 80891340 -96082800 + CT-rich Low_complexity Low_complexity 1 274 0 237 350 56 14 chrX 80891505 80891648 -96082492 + MIR SINE MIR 2 150 -112 1565 249 22 3 chrX 80891913 80892271 -96081869 - MLT1A1 LTR MaLR 0 365 1 7237 239 37 11 chrX 80892272 80893963 -96080177 - MLT1A1-int LTR MaLR -1 1734 1 1650 206 49 9 chrX 80893970 80894314 -96079826 - MLT1A1 LTR MaLR -7 358 1 510 263 28 65 chrX 80894546 80894763 -96079377 - L2 LINE L2 -1 3312 3104 298 289 35 9 chrX 80894791 80894905 -96079235 - MLT1L LTR MaLR 0 615 499 469 284 156 9 chrX 80894990 80895201 -96078939 - MLT1L LTR MaLR -228 387 146 1918 291 117 14 chrX 80895426 80896241 -96077899 + L2 LINE L2 1215 2113 -1201 3916 212 18 16 chrX 80896270 80896600 -96077540 - L1MB7 LINE L1 -21 6879 6551 9138 101 17 0 chrX 80896600 80897866 -96076274 - HSMAR1 DNA Mariner 0 1287 1 3916 212 18 16 chrX 80897866 80898025 -96076115 - L1MB7 LINE L1 -349 6551 6394 1435 210 49 0 chrX 80898025 80898144 -96075996 + AluJb SINE Alu 1 113 -199 198 0 0 0 chrX 80898144 80898166 -96075974 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1435 210 49 0 chrX 80898166 80898355 -96075785 + AluJb SINE Alu 113 312 0 3916 212 18 16 chrX 80898355 80898917 -96075223 - L1MB7 LINE L1 -506 6394 5823 5142 236 19 64 chrX 80898919 80899366 -96074774 - L1MB7 LINE L1 -1447 5415 4950 306 0 0 0 chrX 80899366 80899400 -96074740 + (TG)n Simple_repeat Simple_repeat 2 35 0 5142 236 19 64 chrX 80899400 80899498 -96074642 - L1MB7 LINE L1 -1912 4950 4849 1710 182 17 57 chrX 80899498 80899904 -96074236 - MLT1B LTR MaLR 0 390 1 5142 236 19 64 chrX 80899904 80900763 -96073377 - L1MB7 LINE L1 -2013 4849 4230 264 30 0 0 chrX 80900763 80900796 -96073344 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 5142 236 19 64 chrX 80900796 80901499 -96072641 - L1MB7 LINE L1 -2632 4230 3497 4631 144 39 3 chrX 80901504 80902609 -96071531 + L1PA12 LINE L1 4903 6040 -128 2103 123 71 6 chrX 80902609 80902949 -96071191 + THE1B LTR MaLR 1 362 -2 6150 119 7 4 chrX 80902951 80903850 -96070290 + THE1B-int LTR MaLR 1 901 -679 955 186 48 48 chrX 80903852 80904062 -96070078 + THE1B LTR MaLR 153 362 -2 831 63 18 0 chrX 80904064 80904175 -96069965 + L1PA13 LINE L1 6036 6148 -15 2299 38 0 4 chrX 80904177 80904443 -96069697 - AluY SINE Alu -9 302 38 23 68 0 0 chrX 80904475 80904519 -96069621 + AT_rich Low_complexity Low_complexity 1 44 0 4813 261 40 24 chrX 80904529 80908796 -96065344 - L1MB7 LINE L1 -3387 3475 27 438 278 73 39 chrX 80908836 80909275 -96064865 - L1M4c LINE L1 -4099 3039 2586 910 272 53 57 chrX 80909425 80909687 -96064453 - L1M4c LINE L1 -4452 2686 2425 2232 98 0 23 chrX 80909687 80909993 -96064147 - AluSp SINE Alu -14 299 1 910 272 53 57 chrX 80909993 80910360 -96063780 - L1M4c LINE L1 -4713 2425 1907 * 3538 289 24 14 chrX 80910358 80911376 -96062764 - L1M4c LINE L1 -5782 1077 50 4301 171 37 29 chrX 80911661 80911942 -96062198 + L1MA5 LINE L1 4728 5005 -1295 778 247 0 25 chrX 80911942 80912104 -96062036 + FAM SINE Alu 1 158 -17 4301 171 37 29 chrX 80912104 80913218 -96060922 + L1MA5 LINE L1 5005 6119 -181 1049 195 106 50 chrX 80913220 80913639 -96060501 + LTR22 LTR ERVK 1 509 0 2038 131 0 0 chrX 80913639 80913954 -96060186 - AluY SINE Alu 0 315 1 1019 133 39 0 chrX 80913954 80914134 -96060006 + L1MA5 LINE L1 6108 6294 -6 4654 198 33 25 chrX 80914379 80915656 -96058484 - L1MA10 LINE L1 -14 6320 5038 235 303 104 36 chrX 80915803 80916216 -96057924 + L1 LINE L1 3718 4158 -1988 400 313 91 26 chrX 80916359 80916589 -96057551 + L1 LINE L1 4311 4555 -1591 6251 68 2 0 chrX 80916682 80917482 -96056658 - L1PA8 LINE L1 -5 6167 5366 1761 102 0 4 chrX 80917479 80917744 -96056396 + L1PA8 LINE L1 5076 5339 -807 * 992 268 118 39 chrX 80917934 80918401 -96055739 - MLT1J LTR MaLR -7 504 1 205 194 0 0 chrX 80918441 80918477 -96055663 - MER5A DNA MER1_type 0 189 154 1639 229 66 8 chrX 80918480 80918843 -96055297 + MLT1E LTR MaLR 206 589 -4 225 296 0 0 chrX 80919118 80919129 -96055011 + MER3 DNA MER1_type 37 47 -162 425 267 5 121 chrX 80919129 80919335 -96054805 - MER3 DNA MER1_type 0 209 28 971 262 118 58 chrX 80919655 80920120 -96054020 + HsTC2a DNA Tc2 3 495 -249 849 206 0 0 chrX 80920129 80920270 -96053870 - FRAM SINE Alu -23 153 13 627 204 93 14 chrX 80920278 80920494 -96053646 + HsTC2a DNA Tc2 497 729 -13 280 247 0 22 chrX 80920506 80920595 -96053545 + (TAA)n Simple_repeat Simple_repeat 3 89 0 21 0 0 0 chrX 80921170 80921191 -96052949 + AT_rich Low_complexity Low_complexity 1 21 0 578 307 79 41 chrX 80921211 80921605 -96052535 + MLT1H1 LTR MaLR 1 409 -146 2528 164 14 23 chrX 80921720 80922240 -96051900 + L1MA4 LINE L1 5786 6300 0 494 277 84 19 chrX 80922442 80922615 -96051525 + L1MC4 LINE L1 7446 7637 -405 1753 196 28 6 chrX 80922615 80922972 -96051168 - MLT1A1 LTR MaLR 0 365 1 494 277 84 19 chrX 80922972 80923011 -96051129 + L1MC4 LINE L1 7637 7672 -370 676 211 66 13 chrX 80923026 80923178 -96050962 + MER31B LTR ERV1 1 160 -306 3685 176 73 73 chrX 80923222 80924136 -96050004 + MER21A LTR ERV1 1 914 -17 629 232 58 48 chrX 80924168 80924375 -96049765 + MER31B LTR ERV1 254 462 -4 25 0 0 0 chrX 80924521 80924546 -96049594 + AT_rich Low_complexity Low_complexity 1 25 0 261 98 0 0 chrX 80924590 80924631 -96049509 + (TG)n Simple_repeat Simple_repeat 2 42 0 840 259 29 86 chrX 80924869 80925243 -96048897 - HsTC2c DNA Tc2 -3 726 374 385 234 0 27 chrX 80925385 80925479 -96048661 + L1 LINE L1 5203 5298 -848 189 0 0 0 chrX 80925479 80925500 -96048640 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 4089 146 18 84 chrX 80925503 80926408 -96047732 + L1PA6 LINE L1 5309 6153 -1 385 234 0 27 chrX 80926408 80926420 -96047720 + L1 LINE L1 5300 5310 -836 421 280 95 74 chrX 80926590 80926833 -96047307 - MLT1G1 LTR MaLR -185 410 163 346 296 76 41 chrX 80927049 80927512 -96046628 + L1 LINE L1 4759 5237 -909 321 325 17 0 chrX 80927778 80927898 -96046242 + CT-rich Low_complexity Low_complexity 1 122 0 4473 270 35 22 chrX 80928013 80928999 -96045141 + L1PBa LINE L1 7 1065 -5798 333 47 0 0 chrX 80928999 80929042 -96045098 + (CA)n Simple_repeat Simple_repeat 2 44 0 4473 270 35 22 chrX 80929042 80929614 -96044526 + L1PBa LINE L1 1065 1628 -5235 * 4645 192 64 10 chrX 80929590 80930529 -96043611 + L1PA15 LINE L1 660 1649 -5214 33 25 0 0 chrX 80930530 80930570 -96043570 + AT_rich Low_complexity Low_complexity 1 40 0 7137 215 25 81 chrX 80930570 80932186 -96041954 + L1PA15 LINE L1 1952 3657 -3205 839 191 34 0 chrX 80932186 80932333 -96041807 + AluSp SINE Alu 132 283 -30 180 0 0 0 chrX 80932336 80932356 -96041784 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7137 215 25 81 chrX 80932356 80933709 -96040431 + L1PA15 LINE L1 3659 4982 -1880 2892 280 58 10 chrX 80933697 80935053 -96039087 + L1M4 LINE L1 2367 3788 -2358 * 4963 186 7 10 chrX 80935146 80936601 -96037539 + L1PA15 LINE L1 5068 6519 -362 566 100 0 0 chrX 80936601 80936681 -96037459 - MADE1 DNA Mariner 0 80 1 4963 186 7 10 chrX 80936681 80937021 -96037119 + L1PA15 LINE L1 6519 6858 -23 243 0 0 0 chrX 80937028 80937055 -96037085 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 468 252 84 10 chrX 80937055 80937360 -96036780 + MSTD LTR MaLR 37 396 0 1365 221 64 8 chrX 80937429 80937787 -96036353 + MSTB1 LTR MaLR 3 380 -52 1712 276 36 3 chrX 80937795 80938103 -96036037 - L1 LINE L1 -3380 2766 2470 357 24 0 0 chrX 80938103 80938145 -96035995 + (TA)n Simple_repeat Simple_repeat 2 43 0 1712 276 36 3 chrX 80938145 80938412 -96035728 - L1 LINE L1 -3676 2470 2172 5926 146 17 5 chrX 80938422 80939662 -96034478 - L1MA1 LINE L1 -7 7714 6461 6648 200 27 19 chrX 80940209 80940288 -96033852 - L1MA1 LINE L1 -1097 6468 6391 1661 145 48 58 chrX 80940288 80940667 -96033473 - THE1C LTR MaLR 0 375 1 6648 200 27 19 chrX 80940667 80942249 -96031891 - L1MA1 LINE L1 -1174 6391 4793 17291 195 24 20 chrX 80942257 80944827 -96029313 - L1MA1 LINE L1 -3207 4358 1755 201 39 0 0 chrX 80944827 80944853 -96029287 + (TC)n Simple_repeat Simple_repeat 1 26 0 17291 195 24 20 chrX 80944853 80946605 -96027535 - L1MA1 LINE L1 -5810 1755 13 384 155 0 14 chrX 80946606 80946677 -96027463 + MSTB1 LTR MaLR 363 432 0 183 255 78 98 chrX 80948212 80948314 -96025826 + MIR SINE MIR 137 236 -26 273 275 12 12 chrX 80948996 80949076 -96025064 + HAL1 LINE L1 757 836 -1671 290 271 42 10 chrX 80949150 80949246 -96024894 + L1MEc LINE L1 380 478 -5918 1238 294 38 30 chrX 80949274 80949775 -96024365 + L1MEc LINE L1 46 598 -5798 2394 88 0 7 chrX 80949775 80950082 -96024058 - AluSq SINE Alu -8 305 1 1238 294 38 30 chrX 80950082 80950259 -96023881 + L1MEc LINE L1 598 772 -5624 345 258 79 11 chrX 80950278 80950468 -96023672 + L1MEc LINE L1 980 1182 -5214 1138 244 94 37 chrX 80950593 80951069 -96023071 - LTR40b LTR ERVL 0 462 3 564 221 7 20 chrX 80951069 80951217 -96022923 - MER3 DNA MER1_type -51 158 13 345 325 40 8 chrX 80951260 80951386 -96022754 - MIR SINE MIR -76 186 57 637 265 113 81 chrX 80951424 80951524 -96022616 + MLT1G1 LTR MaLR 1 96 -499 1674 91 27 5 chrX 80951524 80951744 -96022396 + AluSg SINE Alu 1 225 -85 637 265 113 81 chrX 80951744 80952050 -96022090 + MLT1G1 LTR MaLR 96 420 -175 255 219 27 14 chrX 80952134 80952207 -96021933 + MLT1G1 LTR MaLR 517 590 0 2287 171 56 9 chrX 80953444 80953872 -96020268 + MER83 LTR ERV1 1 448 0 1241 188 27 12 chrX 80953872 80954128 -96020012 + MER83-int LTR ERV1 12 271 -4014 509 105 0 0 chrX 80954128 80954204 -96019936 + MSTA LTR MaLR 353 428 0 3893 116 64 11 chrX 80954204 80954849 -96019291 + MSTA-int LTR MaLR 1 679 -901 846 103 76 19 chrX 80954853 80955035 -96019105 + THE1C LTR MaLR 221 375 0 737 313 54 33 chrX 80955373 80955899 -96018241 - HUERS-P3 LTR ERV1 -2070 6556 4611 428 325 10 20 chrX 80956396 80956649 -96017491 - HUERS-P3 LTR ERV1 -2976 4146 3971 252 341 0 7 chrX 80956892 80957027 -96017113 - HUERS-P3 LTR ERV1 -4280 4639 4506 4793 127 7 0 chrX 80957077 80958195 -96015945 - THE1C-int LTR MaLR -413 1167 3 1695 144 92 18 chrX 80958197 80958524 -96015616 - THE1C LTR MaLR 0 375 25 313 109 0 0 chrX 80958524 80958570 -96015570 - THE1C LTR MaLR -324 51 6 2008 184 26 3 chrX 80959361 80959752 -96014388 + HERVR LTR ERV1 1927 2326 -1959 391 315 0 0 chrX 80961005 80961151 -96012989 + HERVR LTR ERV1 6956 7101 -291 216 0 0 0 chrX 80961164 80961188 -96012952 + (A)n Simple_repeat Simple_repeat 1 24 0 2110 146 39 5 chrX 80961356 80961789 -96012351 - L1M1 LINE L1 -5073 2492 2045 4779 105 58 69 chrX 80961789 80963224 -96010916 - pTR5 LTR ERV1 0 2606 1524 10343 194 19 9 chrX 80963224 80965237 -96008903 - L1M1 LINE L1 -5516 2049 17 198 91 0 0 chrX 80966303 80966336 -96007804 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 228 238 0 0 chrX 80966353 80966416 -96007724 + MLT2B1 LTR ERVL 458 520 0 618 375 98 18 chrX 80967231 80967668 -96006472 - L2 LINE L2 -653 2661 2190 594 256 26 67 chrX 80968013 80968139 -96006001 + MIR SINE MIR 4 116 -146 1779 157 4 0 chrX 80968139 80968462 -96005678 - AluJb SINE Alu 0 324 1 594 256 26 67 chrX 80968462 80968604 -96005536 + MIR SINE MIR 116 262 0 501 364 68 14 chrX 80969120 80969549 -96004591 - L2 LINE L2 -1195 2119 1668 2260 106 0 6 chrX 80969601 80969912 -96004228 + AluSg SINE Alu 1 309 -1 258 387 9 0 chrX 80971241 80971347 -96002793 - MIR SINE MIR -105 157 51 499 278 8 0 chrX 80971779 80971912 -96002228 + MLT1E3 LTR MaLR 64 197 -427 429 243 0 0 chrX 80971940 80972047 -96002093 - L1MA9 LINE L1 -34 6278 6172 892 206 30 0 chrX 80972051 80972250 -96001890 - L1MA9 LINE L1 -241 6071 5867 1272 237 68 24 chrX 80972285 80972665 -96001475 + MLT1E3 LTR MaLR 223 619 -5 1106 225 35 25 chrX 80972947 80973263 -96000877 - PABL_B LTR ERV1 0 667 349 865 227 22 85 chrX 80974155 80974604 -95999536 + L1MB4 LINE L1 609 1029 -5251 451 261 0 67 chrX 80974604 80974648 -95999492 + MER21B LTR ERV1 328 373 -490 2358 116 78 10 chrX 80974648 80975045 -95999095 - MSTA LTR MaLR 0 428 5 451 261 0 67 chrX 80975045 80975119 -95999021 + MER21B LTR ERV1 373 438 -425 2002 193 5 12 chrX 80975256 80975661 -95998479 + MER21B LTR ERV1 455 856 -7 1214 167 9 0 chrX 80975686 80975901 -95998239 + MER21B-int LTR ERV1 7 223 -3968 2894 147 36 9 chrX 80975901 80976498 -95997642 + MER4B LTR ERV1 1 779 0 1994 166 8 26 chrX 80976498 80976884 -95997256 + MER21B-int LTR ERV1 220 598 -3593 3499 153 9 74 chrX 80976884 80977623 -95996517 - LTR8 LTR ERV1 0 691 1 1274 203 13 0 chrX 80977623 80977860 -95996280 + MER21B-int LTR ERV1 1561 1800 -2391 3342 206 22 44 chrX 80977889 80978195 -95995945 + MER21B-int LTR ERV1 1644 1955 -2236 2110 147 47 28 chrX 80978195 80978623 -95995517 + LTR23 LTR ERV1 2 437 0 3342 206 22 44 chrX 80978623 80979132 -95995008 + MER21B-int LTR ERV1 1955 2441 -1750 18279 83 10 12 chrX 80979138 80984866 -95989274 + L1PA6 LINE L1 378 6153 -1 6883 174 48 26 chrX 80984965 80986649 -95987491 + MER21B-int LTR ERV1 2431 4146 -45 2378 227 59 0 chrX 80986723 80987195 -95986945 + MER21B LTR ERV1 1 500 -363 4942 260 101 8 chrX 80987195 80990561 -95983579 + L1MB4 LINE L1 1030 4721 -1661 3309 106 2 0 chrX 80990567 80991019 -95983121 + MLT2A2 LTR ERVL 1 453 0 41512 97 9 2 chrX 80991020 80996631 -95977509 + HERVL-A2-A2 LTR ERVL 2 5654 0 3353 100 4 0 chrX 80996631 80997082 -95977058 + MLT2A2 LTR ERVL 1 453 0 248 213 0 16 chrX 80997097 80997158 -95976982 + L1MB4 LINE L1 4769 4828 -1554 653 192 42 0 chrX 80997182 80997302 -95976838 - FLAM_C SINE Alu -18 125 1 3216 209 99 11 chrX 80997359 80998786 -95975354 + L1MB4 LINE L1 4875 6416 0 388 256 91 57 chrX 80998891 80999242 -95974898 + L1ME3A LINE L1 1210 1572 -4958 24 120 0 0 chrX 80999317 80999467 -95974673 + AT_rich Low_complexity Low_complexity 1 150 0 269 316 27 0 chrX 80999504 80999682 -95974458 + L1ME3A LINE L1 1675 1911 -990 331 331 99 11 chrX 81000126 81000457 -95973683 + L1ME3A LINE L1 2334 2684 -3856 564 258 111 29 chrX 81000595 81001010 -95973130 + L1MC5 LINE L1 7331 7779 -182 1815 111 37 65 chrX 81001143 81001495 -95972645 + L1MA9 LINE L1 5971 6312 0 21 0 0 0 chrX 81001498 81001519 -95972621 + AT_rich Low_complexity Low_complexity 1 21 0 451 321 16 27 chrX 81001669 81001856 -95972284 - MLT1K LTR MaLR -12 576 392 581 256 126 28 chrX 81004291 81004647 -95969493 + L1ME3A LINE L1 4955 5345 -1195 365 282 37 37 chrX 81004709 81004872 -95969268 + LTR65 LTR ERV1 2 164 -505 339 241 14 47 chrX 81005057 81005177 -95968963 + LTR65 LTR ERV1 534 604 -10 522 249 15 85 chrX 81005187 81005528 -95968612 + L1ME3A LINE L1 5402 5718 -822 1188 258 23 37 chrX 81005576 81006011 -95968129 + L1ME3A LINE L1 5945 6373 -191 1776 207 24 11 chrX 81006672 81007054 -95967086 - MLT1B LTR MaLR -3 387 1 27 0 0 0 chrX 81007096 81007123 -95967017 + AT_rich Low_complexity Low_complexity 1 27 0 1131 185 129 40 chrX 81007233 81007405 -95966735 + MLT1B LTR MaLR 1 156 -234 315 0 0 0 chrX 81007405 81007440 -95966700 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 39 0 0 chrX 81007439 81007465 -95966675 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1131 185 129 40 chrX 81007440 81007593 -95966547 + MLT1B LTR MaLR 156 328 -62 716 259 26 11 chrX 81007593 81007782 -95966358 - MLT1A1 LTR MaLR 0 365 174 437 198 102 114 chrX 81007850 81008017 -95966123 - MLT1A1 LTR MaLR -171 194 30 286 203 17 0 chrX 81008030 81008089 -95966051 + MLT1B LTR MaLR 331 390 0 5058 149 4 0 chrX 81008233 81009753 -95964387 - L1PA13 LINE L1 0 6814 5282 1136 124 0 0 chrX 81009753 81009906 -95964234 - AluSp SINE Alu -27 286 134 13171 221 24 16 chrX 81009911 81015133 -95959007 - L1PA13 LINE L1 -1510 5287 1 557 188 9 13 chrX 81015172 81015303 -95958837 + L1ME LINE L1 5607 5727 -439 264 212 0 0 chrX 81015431 81015497 -95958643 + (TA)n Simple_repeat Simple_repeat 2 67 0 384 349 90 18 chrX 81015682 81016126 -95958014 + L1MEc LINE L1 55 530 -5866 303 259 22 49 chrX 81016234 81016419 -95957721 + L1MEc LINE L1 688 867 -5529 * 2242 254 30 27 chrX 81016400 81017292 -95956848 + L1MEc LINE L1 2345 3239 -2976 231 163 0 0 chrX 81017313 81017356 -95956784 - L1PA15-16 LINE L1 -4015 2834 2792 3083 114 29 44 chrX 81017401 81017927 -95956213 + L1PA13 LINE L1 5645 6162 -1 3068 253 41 23 chrX 81017937 81019050 -95955090 + L1 LINE L1 2148 3280 -2866 2387 131 24 5 chrX 81019049 81019424 -95954716 + MSTA-int LTR MaLR 1270 1651 0 * 2205 133 84 30 chrX 81019424 81019484 -95954656 + MSTA LTR MaLR 1 56 -372 2107 135 0 0 chrX 81019484 81019780 -95954360 + AluSx SINE Alu 1 296 -16 2205 133 84 30 chrX 81019780 81020125 -95954015 + MSTA LTR MaLR 56 428 0 433 128 26 0 chrX 81020792 81020870 -95953270 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chrX 81021281 81021310 -95952830 + (TC)n Simple_repeat Simple_repeat 2 30 0 252 234 28 28 chrX 81021310 81021451 -95952689 + (TATAA)n Simple_repeat Simple_repeat 5 145 0 21 57 0 0 chrX 81021905 81021940 -95952200 + AT_rich Low_complexity Low_complexity 1 35 0 381 285 71 38 chrX 81021964 81022231 -95951909 - L1MC5 LINE L1 -192 7769 7494 622 204 184 14 chrX 81022257 81022404 -95951736 + MER5A DNA MER1_type 17 188 -1 252 337 0 0 chrX 81022406 81022495 -95951645 - L1MC5 LINE L1 -527 7434 7346 1226 286 90 48 chrX 81022673 81024220 -95949920 - L1MC4 LINE L1 -735 7226 5612 1456 251 72 88 chrX 81024241 81024796 -95949344 + MLT2B3 LTR ERVL 1 546 -8 1601 227 37 27 chrX 81024800 81025201 -95948939 - LTR52 LTR ERVL -10 411 7 553 248 100 38 chrX 81025201 81025295 -95948845 - L1MC4 LINE L1 -2215 5593 5506 243 0 0 0 chrX 81025295 81025322 -95948818 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 553 248 100 38 chrX 81025322 81025437 -95948703 - L1MC4 LINE L1 -2302 5506 5371 23 0 0 0 chrX 81025555 81025578 -95948562 + AT_rich Low_complexity Low_complexity 1 23 0 396 222 65 0 chrX 81027559 81027667 -95946473 - L1MC/D LINE L1 -2323 5554 5440 272 336 80 28 chrX 81028012 81028437 -95945703 - L1MC/D LINE L1 -1167 5048 4602 3715 138 44 64 chrX 81028497 81029201 -95944939 + LTR8 LTR ERV1 2 691 0 688 196 161 12 chrX 81029209 81029377 -95944763 - MER6B DNA MER2_type -3 207 15 245 326 0 11 chrX 81031629 81031718 -95942422 - Charlie8 DNA MER1_type -2199 218 131 698 258 7 40 chrX 81032997 81033381 -95940759 - L1MEc LINE L1 -3660 2555 688 396 358 36 45 chrX 81033407 81033739 -95940401 - L1MEc LINE L1 -5830 566 238 327 219 94 42 chrX 81035341 81035437 -95938703 + L1MC4 LINE L1 6602 6702 -1340 2246 107 7 7 chrX 81035534 81035842 -95938298 + AluSg1 SINE Alu 1 308 -1 493 184 50 1 chrX 81035898 81036013 -95938127 - L1MC/D LINE L1 -439 5727 5620 17360 207 28 10 chrX 81036075 81042695 -95931445 + L1PA13 LINE L1 1 6812 -2 5781 204 24 29 chrX 81043782 81045282 -95928858 + L1PB1 LINE L1 3871 5363 -783 895 124 0 7 chrX 81045270 81045407 -95928733 + L1PA11 LINE L1 5720 5855 -319 * 5131 102 26 5 chrX 81045406 81046169 -95927971 + L1PB1 LINE L1 5367 6145 -6 262 363 74 32 chrX 81046204 81046394 -95927746 - MLT1K LTR MaLR -186 402 205 2914 155 8 10 chrX 81046644 81047141 -95926999 + L1PA13 LINE L1 5668 6163 0 252 277 24 0 chrX 81047143 81047226 -95926914 - L1M4 LINE L1 -1587 4559 4475 1982 243 33 19 chrX 81047250 81047696 -95926444 - L1M3 LINE L1 -393 5790 5333 2102 126 3 3 chrX 81047696 81047997 -95926143 - AluSx SINE Alu -11 301 1 1982 243 33 19 chrX 81047997 81048157 -95925983 - L1M3 LINE L1 -850 5333 5177 5106 201 9 38 chrX 81048158 81048859 -95925281 - MSTA-int LTR MaLR -610 1041 321 2158 117 0 10 chrX 81048859 81049158 -95924982 - AluSx SINE Alu -13 299 4 5106 201 9 38 chrX 81049158 81049174 -95924966 - MSTA-int LTR MaLR -1330 321 306 2056 104 0 60 chrX 81049174 81049490 -95924650 - AluSg SINE Alu -13 297 1 5106 201 9 38 chrX 81049490 81049655 -95924485 - MSTA-int LTR MaLR -1345 306 192 3123 178 22 2 chrX 81049655 81050201 -95923939 - MER41D LTR ERV1 0 557 1 5106 201 9 38 chrX 81050201 81050388 -95923752 - MSTA-int LTR MaLR -1459 192 1 2202 167 54 2 chrX 81050388 81050795 -95923345 - MSTA LTR MaLR 0 428 1 2057 130 10 0 chrX 81051070 81051370 -95922770 - AluSg SINE Alu -7 303 1 21 0 0 0 chrX 81051414 81051435 -95922705 + AT_rich Low_complexity Low_complexity 1 21 0 610 256 69 13 chrX 81051472 81051777 -95922363 - L1M3 LINE L1 -1446 4700 4379 675 215 27 16 chrX 81052075 81052261 -95921879 - MER53 DNA DNA 0 189 2 421 282 109 46 chrX 81052651 81053703 -95920437 - L1M3 LINE L1 -2576 3570 2452 1327 232 73 59 chrX 81053790 81054224 -95919916 - MLT2C2 LTR ERVL -20 534 1 328 242 171 40 chrX 81054230 81054528 -95919612 - L1M3 LINE L1 -3700 2446 2110 25 0 0 0 chrX 81054918 81054943 -95919197 + AT_rich Low_complexity Low_complexity 1 25 0 995 102 0 0 chrX 81054956 81055084 -95919056 + AluSq/x SINE Alu 6 133 -180 255 61 0 0 chrX 81055084 81055117 -95919023 + (A)n Simple_repeat Simple_repeat 1 33 0 645 275 45 6 chrX 81055534 81055712 -95918428 - MER20 DNA MER1_type -1 218 34 252 93 93 0 chrX 81055745 81055788 -95918352 - MLT1D LTR MaLR -9 496 450 17382 179 35 38 chrX 81055792 81059304 -95914836 + L1MA2 LINE L1 12 3533 -4190 195 42 0 0 chrX 81059304 81059328 -95914812 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 17382 179 35 38 chrX 81059328 81059434 -95914706 + L1MA2 LINE L1 3533 3638 -4085 2321 69 0 0 chrX 81059434 81059783 -95914357 + AluY SINE Alu 1 311 0 17382 179 35 38 chrX 81059783 81062344 -95911796 + L1MA2 LINE L1 3638 6205 -1518 1921 80 0 0 chrX 81062344 81062583 -95911557 + AluY SINE Alu 1 239 -72 17382 179 35 38 chrX 81062583 81063136 -95911004 + L1MA2 LINE L1 6205 6758 -965 333 47 0 0 chrX 81063136 81063179 -95910961 + (TA)n Simple_repeat Simple_repeat 2 44 0 17382 179 35 38 chrX 81063179 81064152 -95909988 + L1MA2 LINE L1 6758 7723 0 279 79 0 0 chrX 81064209 81064247 -95909893 + (A)n Simple_repeat Simple_repeat 1 38 0 4918 174 71 20 chrX 81064262 81064696 -95909444 + L1MA4 LINE L1 4681 5091 -1209 219 114 0 0 chrX 81064696 81064731 -95909409 + (CA)n Simple_repeat Simple_repeat 2 36 0 4918 174 71 20 chrX 81064731 81064884 -95909256 + L1MA4 LINE L1 5091 5235 -1065 2217 114 0 0 chrX 81064884 81065190 -95908950 + AluSc SINE Alu 1 306 -3 4918 174 71 20 chrX 81065190 81066122 -95908018 + L1MA4 LINE L1 5235 6284 -16 2301 75 3 0 chrX 81066125 81066420 -95907720 - AluY SINE Alu -15 296 1 1577 263 49 29 chrX 81066499 81066944 -95907196 - MLT1D LTR MaLR -51 454 1 366 333 13 47 chrX 81066945 81067095 -95907045 - MLT1H LTR MaLR -210 339 195 388 191 53 11 chrX 81067365 81067459 -95906681 - L1MEd LINE L1 -4867 1252 1155 282 234 55 21 chrX 81067497 81067642 -95906498 - HAL1 LINE L1 -335 2172 2023 1414 86 10 0 chrX 81068030 81068228 -95905912 + L1PB1 LINE L1 5950 6149 -2 22 0 0 0 chrX 81068229 81068251 -95905889 + AT_rich Low_complexity Low_complexity 1 22 0 1480 257 126 31 chrX 81068279 81068980 -95905160 + HAL1 LINE L1 1010 1776 -731 4690 227 15 10 chrX 81069058 81070694 -95903446 - L1PA15-16 LINE L1 -3154 3695 2049 327 130 0 0 chrX 81071042 81071096 -95903044 + (TA)n Simple_repeat Simple_repeat 2 55 0 2258 95 0 3 chrX 81071097 81071393 -95902747 - AluSc SINE Alu -13 296 2 26 0 0 0 chrX 81071396 81071422 -95902718 + AT_rich Low_complexity Low_complexity 1 26 0 325 203 26 7 chrX 81072762 81072915 -95901225 + (TA)n Simple_repeat Simple_repeat 1 156 0 238 306 41 20 chrX 81072932 81073030 -95901110 + L2 LINE L2 3170 3269 -3 806 181 13 13 chrX 81074016 81074171 -95899969 - FRAM SINE Alu -16 160 6 21 0 0 0 chrX 81075121 81075142 -95898998 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chrX 81075628 81075668 -95898472 + AT_rich Low_complexity Low_complexity 1 40 0 28 71 0 0 chrX 81076194 81076250 -95897890 + AT_rich Low_complexity Low_complexity 1 56 0 4870 160 9 9 chrX 81076825 81077717 -95896423 - L1MA3 LINE L1 0 7724 6833 2128 199 37 25 chrX 81077720 81078207 -95895933 + L1 LINE L1 3964 4456 -1690 4810 170 23 3 chrX 81079616 81080534 -95893606 + L1 LINE L1 4441 5376 -770 397 297 42 36 chrX 81082098 81082263 -95891877 + MIR3 SINE MIR 43 208 0 2604 121 3 0 chrX 81082842 81083214 -95890926 + THE1C LTR MaLR 3 375 0 647 197 84 14 chrX 81083619 81083761 -95890379 + FRAM SINE Alu 10 161 -15 23 33 0 0 chrX 81084606 81084636 -95889504 + AT_rich Low_complexity Low_complexity 1 30 0 14678 182 25 38 chrX 81087998 81089705 -95884435 - L1MA3 LINE L1 -996 6569 4841 5869 111 16 34 chrX 81089705 81091698 -95882442 - L1PA13 LINE L1 0 6814 4836 14678 182 25 38 chrX 81091698 81093481 -95880659 - L1MA3 LINE L1 -2724 4841 3036 2798 10 0 0 chrX 81093481 81093791 -95880349 + AluYa5 SINE Alu 1 310 -1 14678 182 25 38 chrX 81093791 81094564 -95879576 - L1MA3 LINE L1 -4529 3036 2254 2368 125 17 8 chrX 81094564 81094925 -95879215 + THE1B LTR MaLR 1 364 0 14678 182 25 38 chrX 81094925 81096377 -95877763 - L1MA3 LINE L1 -5311 2254 931 12458 211 28 8 chrX 81096376 81096497 -95877643 - L1PA13 LINE L1 -2793 4004 3887 * 1618 162 49 85 chrX 81096497 81096886 -95877254 + THE1C LTR MaLR 1 375 0 12458 211 28 8 chrX 81096886 81099882 -95874258 - L1PA13 LINE L1 -2910 3887 772 295 41 41 0 chrX 81099882 81099931 -95874209 + (CA)n Simple_repeat Simple_repeat 1 51 0 12458 211 28 8 chrX 81099931 81100719 -95873421 - L1PA13 LINE L1 -6025 772 1 202 299 30 0 chrX 81100728 81100795 -95873345 + MIR SINE MIR 98 166 -96 23 54 0 0 chrX 81102321 81102358 -95871782 + AT_rich Low_complexity Low_complexity 1 37 0 1250 74 0 0 chrX 81102518 81102681 -95871459 + L1PB1 LINE L1 5615 5777 -374 1106 122 0 6 chrX 81102684 81102706 -95871434 + (TA)n Simple_repeat Simple_repeat 1 201 0 1106 122 0 6 chrX 81102706 81102887 -95871253 + (TA)n Simple_repeat Simple_repeat 1 180 0 1238 141 0 0 chrX 81102921 81103113 -95871027 - L1P5 LINE L1 -523 5628 5437 2503 83 0 0 chrX 81103118 81103445 -95870695 + L1PB1 LINE L1 5782 6108 -43 1532 138 0 0 chrX 81105646 81105870 -95868270 - AluSg/x SINE Alu -8 302 79 827 164 29 0 chrX 81106556 81106696 -95867444 - FRAM SINE Alu -31 145 2 519 281 0 0 chrX 81106897 81107018 -95867122 + L2 LINE L2 3189 3309 -4 25 0 0 0 chrX 81107160 81107185 -95866955 + AT_rich Low_complexity Low_complexity 1 25 0 303 169 0 0 chrX 81108349 81108420 -95865720 + (TA)n Simple_repeat Simple_repeat 2 72 0 215 211 35 0 chrX 81108522 81108579 -95865561 + (TAA)n Simple_repeat Simple_repeat 3 61 0 681 122 14 14 chrX 81109299 81109438 -95864702 + GA-rich Low_complexity Low_complexity 3 141 0 2158 200 15 19 chrX 81110053 81110406 -95863734 - L1MA9 LINE L1 -38 6274 5922 256 312 38 19 chrX 81110406 81110563 -95863577 - L1ME3A LINE L1 -244 5926 5767 711 119 59 0 chrX 81111873 81111991 -95862149 + L1MB1 LINE L1 6042 6166 -2 2200 107 3 3 chrX 81112244 81112544 -95861596 - AluSx SINE Alu -12 300 1 254 321 22 35 chrX 81113547 81113660 -95860480 - MIR SINE MIR -74 134 20 283 278 83 56 chrX 81114116 81114215 -95859925 - L1MA10 LINE L1 -4 6330 6224 2329 118 8 8 chrX 81114215 81114570 -95859570 - THE1A LTR MaLR 0 355 1 283 278 83 56 chrX 81114570 81114614 -95859526 - L1MA10 LINE L1 -110 6224 6183 779 210 54 34 chrX 81115583 81115968 -95858172 - MER31B LTR ERV1 0 466 3 381 273 111 29 chrX 81115968 81116140 -95858000 + L2 LINE L2 3120 3305 -8 31 26 0 0 chrX 81117498 81117536 -95856604 + AT_rich Low_complexity Low_complexity 1 38 0 1458 182 0 97 chrX 81118115 81118487 -95855653 + AluJb SINE Alu 1 340 0 13720 157 31 6 chrX 81119168 81121488 -95852652 + L1PA11 LINE L1 2820 5230 -944 243 0 0 0 chrX 81121488 81121515 -95852625 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 13720 157 31 6 chrX 81121515 81122480 -95851660 + L1PA11 LINE L1 5230 6169 -5 8471 187 30 68 chrX 81122717 81126046 -95848094 - L1PA15 LINE L1 -13 6152 2928 2043 113 7 10 chrX 81126419 81126710 -95847430 - AluSx SINE Alu -20 292 3 402 182 0 0 chrX 81126714 81126791 -95847349 + Tigger7 DNA MER2_type 2454 2530 -57 2075 130 3 3 chrX 81126811 81127118 -95847022 - AluSg SINE Alu -3 307 1 23 78 0 0 chrX 81127223 81127274 -95846866 + AT_rich Low_complexity Low_complexity 1 51 0 27 49 0 0 chrX 81127320 81127361 -95846779 + AT_rich Low_complexity Low_complexity 1 41 0 23 54 0 0 chrX 81127390 81127427 -95846713 + AT_rich Low_complexity Low_complexity 1 37 0 800 284 66 8 chrX 81131372 81131615 -95842525 + MIR SINE MIR 2 258 -4 2577 187 111 15 chrX 81132336 81132929 -95841211 - L1MB8 LINE L1 -1 6177 5528 2153 90 0 3 chrX 81133055 81133344 -95840796 + AluSx SINE Alu 11 298 -14 2527 64 0 0 chrX 81133363 81133674 -95840466 + AluY SINE Alu 1 311 0 2252 68 0 4 chrX 81137346 81137626 -95836514 - AluY SINE Alu -4 307 29 352 281 150 31 chrX 81137634 81137794 -95836346 + MIR SINE MIR 53 231 -31 240 301 41 0 chrX 81137789 81137862 -95836278 - MIR SINE MIR -127 135 60 * 13365 136 22 60 chrX 81138743 81141257 -95832883 - Tigger1 DNA MER2_type -1 2417 1 239 305 75 70 chrX 81141268 81141481 -95832659 - MIR SINE MIR -15 247 34 196 342 75 25 chrX 81142283 81142444 -95831696 - L3b LINE CR1 -104 1479 1311 2328 95 0 0 chrX 81143946 81144250 -95829890 + AluSq SINE Alu 1 304 -9 6600 121 21 1 chrX 81144953 81146018 -95828122 + L1MA1 LINE L1 5216 6301 -1 21 36 0 0 chrX 81146018 81146046 -95828094 + AT_rich Low_complexity Low_complexity 1 28 0 2251 92 3 7 chrX 81146881 81147187 -95826953 - AluSp SINE Alu -4 309 5 1999 153 22 27 chrX 81151319 81151685 -95822455 - THE1B LTR MaLR 0 364 1 422 339 49 27 chrX 81151947 81152171 -95821969 - L2 LINE L2 -231 3082 2854 185 304 0 0 chrX 81152254 81152310 -95821830 - L2 LINE L2 -152 3161 3106 8745 70 2 28 chrX 81152310 81153550 -95820590 + L1P LINE L1 830 2036 -4110 4533 126 21 0 chrX 81153550 81154258 -95819882 + L1PA13 LINE L1 5422 6144 -19 2190 160 5 36 chrX 81154620 81155039 -95819101 - L1PA13 LINE L1 -4641 2146 1741 1122 160 0 24 chrX 81155038 81155251 -95818889 - L1M1 LINE L1 -632 7092 6885 * 1440 142 5 0 chrX 81155251 81155470 -95818670 - AluJb SINE Alu -8 304 85 1281 203 5 12 chrX 81155470 81155900 -95818240 - L1M1 LINE L1 -745 6820 6472 2240 172 17 27 chrX 81155901 81156378 -95817762 + L1 LINE L1 4430 4901 -1245 1076 181 5 9 chrX 81156377 81156592 -95817548 - L1M1 LINE L1 -1777 5788 5575 * 3920 189 35 5 chrX 81156604 81160238 -95813902 - L1M1 LINE L1 -3641 3924 11 1674 86 32 0 chrX 81160343 81160563 -95813577 + AluSg/x SINE Alu 71 297 -13 21 0 0 0 chrX 81160676 81160697 -95813443 + AT_rich Low_complexity Low_complexity 1 21 0 1140 93 25 0 chrX 81162226 81162388 -95811752 + AluSg/x SINE Alu 130 295 -15 2015 135 3 0 chrX 81163987 81164298 -95809842 - AluSx SINE Alu 0 312 1 347 355 32 8 chrX 81164738 81164862 -95809278 - MIR3 SINE MIR -30 178 52 234 208 0 0 chrX 81166091 81166144 -95807996 + CT-rich Low_complexity Low_complexity 2 54 0 914 176 0 0 chrX 81166316 81166486 -95807654 - AluSg/x SINE Alu 0 312 143 1682 177 13 3 chrX 81166768 81167068 -95807072 - AluJb SINE Alu -9 303 1 29 28 0 0 chrX 81167432 81167468 -95806672 + AT_rich Low_complexity Low_complexity 1 36 0 219 175 25 0 chrX 81167781 81167821 -95806319 + (CATATA)n Simple_repeat Simple_repeat 5 45 0 2439 159 20 0 chrX 81168412 81168853 -95805287 - L1MA5 LINE L1 -6 6294 5845 10402 173 30 8 chrX 81169039 81171592 -95802548 - L1MA2 LINE L1 0 7723 5079 360 0 0 0 chrX 81171592 81171632 -95802508 + (TG)n Simple_repeat Simple_repeat 2 41 0 10402 173 30 8 chrX 81171632 81172373 -95801767 - L1MA2 LINE L1 -2644 5079 4356 233 182 0 0 chrX 81172372 81172416 -95801724 - L1MA2 LINE L1 -7508 57 14 * 34 24 0 0 chrX 81172981 81173022 -95801118 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chrX 81173204 81173236 -95800904 + AT_rich Low_complexity Low_complexity 1 32 0 347 324 9 9 chrX 81173724 81173832 -95800308 - MIR3 SINE MIR -16 192 85 2190 159 22 3 chrX 81174426 81174791 -95799349 - THE1C LTR MaLR 0 375 4 8855 143 34 46 chrX 81174794 81176393 -95797747 - THE1C-int LTR MaLR 0 1580 1 2196 160 19 3 chrX 81176393 81176762 -95797378 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 81177597 81177620 -95796520 + AT_rich Low_complexity Low_complexity 1 23 0 12484 200 85 6 chrX 81177952 81178038 -95796102 + L1MA2 LINE L1 11 89 -7476 270 0 0 0 chrX 81178038 81178068 -95796072 + (CA)n Simple_repeat Simple_repeat 2 31 0 12484 200 85 6 chrX 81178068 81180540 -95793600 + L1MA2 LINE L1 89 2772 -4793 2520 181 5 0 chrX 81180540 81180948 -95793192 - MSTA LTR MaLR 0 428 19 785 157 0 8 chrX 81180957 81181091 -95793049 - MSTA-int LTR MaLR 0 1651 1519 * 3264 166 2 2 chrX 81181088 81181644 -95792496 - MSTA-int LTR MaLR -1088 563 8 306 0 0 0 chrX 81181645 81181679 -95792461 + (T)n Simple_repeat Simple_repeat 1 34 0 2217 188 5 5 chrX 81181681 81182079 -95792061 - MSTA LTR MaLR -30 398 1 2443 130 22 0 chrX 81182079 81182487 -95791653 + L1MA2 LINE L1 2768 3184 -4381 6256 166 8 11 chrX 81182489 81184540 -95789600 + L1MA2 LINE L1 5677 7723 0 22 35 0 0 chrX 81184849 81184878 -95789262 + AT_rich Low_complexity Low_complexity 1 29 0 5056 135 5 7 chrX 81185550 81186364 -95787776 - L1P LINE L1 -1322 4824 4013 1923 84 4 0 chrX 81186364 81186622 -95787518 + L1PA11 LINE L1 5912 6173 -1 2272 71 3 7 chrX 81186737 81187034 -95787106 + AluY SINE Alu 1 296 -15 21 0 0 0 chrX 81187685 81187706 -95786434 + AT_rich Low_complexity Low_complexity 1 21 0 423 257 48 91 chrX 81187736 81187923 -95786217 + MIR SINE MIR 13 191 -71 397 156 78 0 chrX 81188185 81188275 -95785865 - L1ME4a LINE L1 -237 5884 5788 2404 82 0 0 chrX 81188333 81188636 -95785504 + AluSg SINE Alu 1 303 -7 43 76 0 0 chrX 81189937 81190029 -95784111 + AT_rich Low_complexity Low_complexity 1 92 0 2030 130 0 0 chrX 81191199 81191504 -95782636 + AluSx SINE Alu 1 305 0 303 280 152 0 chrX 81191730 81191862 -95782278 + MIR3 SINE MIR 34 185 -23 50 75 0 0 chrX 81193946 81194052 -95780088 + AT_rich Low_complexity Low_complexity 1 106 0 254 83 0 0 chrX 81194495 81194543 -95779597 + LTR66 LTR ERVL 391 438 -172 225 0 0 0 chrX 81194543 81194568 -95779572 + (CA)n Simple_repeat Simple_repeat 1 25 0 251 128 0 0 chrX 81194572 81194619 -95779521 - LTR66 LTR ERVL -170 440 394 3431 184 20 27 chrX 81194650 81195628 -95778512 - L1 LINE L1 -3663 3902 2934 12600 218 26 39 chrX 81195638 81196746 -95777394 - L1PA12 LINE L1 -2491 5093 3973 1720 67 0 0 chrX 81196746 81196970 -95777170 + L1PA7 LINE L1 5931 6154 0 12600 218 26 39 chrX 81196970 81199675 -95774465 - L1M4 LINE L1 -3611 3973 1 2396 268 43 29 chrX 81199675 81199879 -95774261 + L1M4 LINE L1 3971 4171 -3413 2171 133 33 25 chrX 81199879 81200240 -95773900 + THE1B LTR MaLR 1 364 0 10801 115 12 12 chrX 81200240 81201701 -95772439 + THE1B-int LTR MaLR 1 1464 -116 2229 101 0 3 chrX 81201701 81201998 -95772142 - AluSx SINE Alu -16 296 1 10801 115 12 12 chrX 81201998 81202116 -95772024 + THE1B-int LTR MaLR 1463 1580 0 1917 147 42 33 chrX 81202117 81202477 -95771663 + THE1B LTR MaLR 2 364 0 2396 268 43 29 chrX 81202477 81203373 -95770767 + L1M4 LINE L1 4170 5090 -2494 1511 122 9 0 chrX 81203378 81203599 -95770541 - AluSp SINE Alu 0 313 91 1666 168 90 6 chrX 81203600 81203921 -95770219 - MSTA LTR MaLR -80 348 1 2489 59 3 0 chrX 81203961 81204267 -95769873 - AluY SINE Alu -4 307 1 180 0 0 0 chrX 81205575 81205595 -95768545 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chrX 81206822 81206852 -95767288 + AT_rich Low_complexity Low_complexity 1 30 0 253 148 0 33 chrX 81206979 81207040 -95767100 + L1MC4 LINE L1 6640 6698 -1344 * 6333 135 27 38 chrX 81207039 81208257 -95765883 + L1MA2 LINE L1 2263 3467 -4098 2927 181 78 26 chrX 81208257 81208948 -95765192 + LTR8A LTR ERV1 1 727 0 553 269 99 16 chrX 81208948 81209130 -95765010 + HUERS-P1 LTR ERV1 1 197 -6066 4147 181 97 60 chrX 81209281 81210423 -95763717 + HUERS-P1 LTR ERV1 3 1624 -4639 * 11264 150 39 33 chrX 81210420 81211047 -95763093 + HUERS-P1 LTR ERV1 768 1390 -4934 2108 113 0 0 chrX 81211047 81211348 -95762792 + AluY SINE Alu 1 301 -10 11264 150 39 33 chrX 81211348 81214385 -95759755 + HUERS-P1 LTR ERV1 1390 5790 -534 1078 176 63 82 chrX 81214407 81214726 -95759414 + HUERS-P1 LTR ERV1 5914 6226 -105 843 247 111 16 chrX 81214731 81214974 -95759166 + HUERS-P1 LTR ERV1 5994 6259 -4 268 143 0 0 chrX 81214976 81215025 -95759115 + LTR8A LTR ERV1 1 49 -678 8678 178 23 17 chrX 81215027 81217902 -95756238 + L1MA2 LINE L1 4778 7682 -41 2288 128 34 3 chrX 81217902 81218255 -95755885 + THE1B LTR MaLR 1 364 0 9750 120 32 31 chrX 81218255 81219834 -95754306 + THE1B-int LTR MaLR 1 1580 0 1090 134 0 0 chrX 81219834 81219991 -95754149 + THE1B LTR MaLR 1 157 -207 1153 186 16 36 chrX 81220010 81220258 -95753882 + L1M3 LINE L1 5503 5745 -435 * 5251 259 81 43 chrX 81220257 81222479 -95751661 + L1MB7 LINE L1 115 2420 -4539 234 285 24 8 chrX 81222540 81222663 -95751477 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 25 0 0 0 chrX 81222782 81222807 -95751333 + AT_rich Low_complexity Low_complexity 1 25 0 233 195 0 0 chrX 81223022 81223063 -95751077 + (CA)n Simple_repeat Simple_repeat 2 42 0 2241 250 72 4 chrX 81223186 81223955 -95750185 + L1MB7 LINE L1 2921 3741 -3216 * 3228 248 102 25 chrX 81223949 81224547 -95749593 + L1MB7 LINE L1 4844 5395 -1600 2380 81 3 3 chrX 81224547 81224855 -95749285 + AluSp SINE Alu 1 308 -5 3228 248 102 25 chrX 81224855 81226234 -95747906 + L1MB7 LINE L1 5395 6986 -9 2515 278 35 19 chrX 81227358 81228203 -95745937 - L1ME1 LINE L1 -19 6147 5289 12027 204 80 16 chrX 81228214 81232143 -95741997 - L1PA16 LINE L1 -3 6866 2354 351 0 0 0 chrX 81232143 81232182 -95741958 + (TG)n Simple_repeat Simple_repeat 2 40 0 12027 204 80 16 chrX 81232182 81234698 -95739442 - L1PA16 LINE L1 -4515 2354 2 2369 258 27 25 chrX 81234728 81235577 -95738563 - L1ME1 LINE L1 -886 5260 4410 671 276 70 8 chrX 81235578 81235821 -95738319 - L1ME1 LINE L1 -1932 4214 3957 862 273 58 6 chrX 81235828 81236173 -95737967 - L1ME1 LINE L1 -3489 2657 2295 24 0 0 0 chrX 81236823 81236847 -95737293 + AT_rich Low_complexity Low_complexity 1 24 0 288 77 0 0 chrX 81239727 81239766 -95734374 + (CA)n Simple_repeat Simple_repeat 2 40 0 203 151 27 68 chrX 81241080 81241153 -95732987 + T-rich Low_complexity Low_complexity 2 71 0 22 0 0 0 chrX 81241791 81241813 -95732327 + AT_rich Low_complexity Low_complexity 1 22 0 1982 176 19 3 chrX 81243581 81243940 -95730200 + MLT1A1 LTR MaLR 1 365 0 326 277 119 64 chrX 81244248 81244450 -95729690 - L2 LINE L2 -903 2411 2199 190 245 20 0 chrX 81244486 81244535 -95729605 - L2 LINE L2 0 3313 3264 211 233 33 17 chrX 81246886 81246946 -95727194 - L2 LINE L2 -3 3310 3250 5954 215 34 27 chrX 81247836 81250350 -95723790 - L1MB3 LINE L1 -9 7593 5052 3485 135 31 3 chrX 81250350 81250926 -95723214 - Tigger3b DNA MER2_type -1 1230 639 811 155 72 61 chrX 81250943 81251124 -95723016 + FAM SINE Alu 1 47 -2 2636 129 27 18 chrX 81251124 81251574 -95722566 - Tigger3b DNA MER2_type -605 626 173 729 176 0 0 chrX 81251609 81251728 -95722412 - FLAM_C SINE Alu -24 119 1 592 153 0 0 chrX 81251728 81251813 -95722327 - Tigger3b DNA MER2_type -1050 181 97 19967 146 10 86 chrX 81251816 81256149 -95717991 - L1P LINE L1 -2140 4006 2 1990 252 49 56 chrX 81256143 81256637 -95717503 - L1MB3 LINE L1 -3053 4512 4016 * 2411 94 0 0 chrX 81256637 81256944 -95717196 - AluSg SINE Alu -3 307 1 1990 252 49 56 chrX 81256944 81257454 -95716686 - L1MB3 LINE L1 -3549 4016 3514 531 277 87 31 chrX 81257759 81257954 -95716186 - L2 LINE L2 -5 3308 3103 205 250 0 0 chrX 81258751 81258803 -95715337 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2879 173 23 8 chrX 81259234 81259765 -95714375 - MER34 LTR ERV1 -3 539 1 24 0 0 0 chrX 81260265 81260289 -95713851 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chrX 81261255 81261276 -95712864 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 81261329 81261354 -95712786 + (TA)n Simple_repeat Simple_repeat 1 25 0 2358 90 0 10 chrX 81261354 81261664 -95712476 - AluY SINE Alu -4 307 1 2338 88 0 0 chrX 81261800 81262108 -95712032 - AluSg1 SINE Alu -1 308 1 180 0 0 0 chrX 81262926 81262946 -95711194 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 27 0 0 0 chrX 81264059 81264086 -95710054 + AT_rich Low_complexity Low_complexity 1 27 0 2198 164 8 14 chrX 81264725 81265092 -95709048 - MLT1A1 LTR MaLR 0 365 1 5309 183 155 49 chrX 81265177 81266679 -95707461 + MER52A LTR ERV1 1 1755 0 206 136 23 0 chrX 81267096 81267140 -95707000 + (TG)n Simple_repeat Simple_repeat 1 45 0 1148 211 4 21 chrX 81269197 81269439 -95704701 + MER58B DNA MER1_type 103 340 -1 7100 54 9 0 chrX 81269515 81270489 -95703651 - L1PA7 LINE L1 0 6154 5176 5099 79 13 1 chrX 81270582 81271265 -95702875 - LTR8 LTR ERV1 0 691 1 1594 164 52 4 chrX 81271739 81272030 -95702110 + AluJb SINE Alu 1 304 0 780 291 44 63 chrX 81272616 81273045 -95701095 - MLT1G LTR MaLR 0 590 170 21 36 0 0 chrX 81273251 81273279 -95700861 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chrX 81274445 81274500 -95699640 + AT_rich Low_complexity Low_complexity 1 55 0 288 0 0 0 chrX 81276557 81276589 -95697551 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chrX 81277225 81277246 -95696894 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chrX 81278448 81278498 -95695642 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chrX 81279752 81279792 -95694348 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrX 81280959 81280988 -95693152 + AT_rich Low_complexity Low_complexity 1 29 0 403 248 58 29 chrX 81281642 81281787 -95692353 + MIR3 SINE MIR 55 188 -27 331 264 0 0 chrX 81281833 81281905 -95692235 - MIR3 SINE MIR -17 191 120 2120 103 10 13 chrX 81282748 81283049 -95691091 + AluSx SINE Alu 1 300 -12 471 84 24 84 chrX 81283655 81283738 -95690402 - AluSg/x SINE Alu -18 294 217 609 289 36 6 chrX 81284886 81285052 -95689088 + MIR SINE MIR 34 204 -58 2441 54 0 3 chrX 81285097 81285395 -95688745 + AluY SINE Alu 1 297 -14 363 215 21 21 chrX 81285476 81285569 -95688571 - MER5A DNA MER1_type -88 101 9 2297 51 0 34 chrX 81285924 81286237 -95687903 - AluY SINE Alu 0 303 1 3495 184 26 4 chrX 81288324 81289027 -95685113 + L1P LINE L1 4492 5209 -937 246 32 0 0 chrX 81289516 81289547 -95684593 + (T)n Simple_repeat Simple_repeat 1 31 0 330 316 33 13 chrX 81291258 81291410 -95682730 + MIR SINE MIR 84 238 -24 2511 39 0 16 chrX 81291999 81292304 -95681836 + AluY SINE Alu 1 300 -11 433 264 90 68 chrX 81292351 81292689 -95681451 - L1MC4a LINE L1 -171 5950 5603 2038 114 13 19 chrX 81292828 81293143 -95680997 + AluSq SINE Alu 1 313 0 333 303 105 24 chrX 81293279 81293576 -95680564 - L1ME3A LINE L1 -245 5925 5605 358 278 118 38 chrX 81293588 81293911 -95680229 - L1ME3A LINE L1 -747 5399 5189 350 331 12 0 chrX 81293928 81294046 -95680094 - L1MC4a LINE L1 -532 5589 5483 2221 106 3 0 chrX 81294063 81294364 -95679776 - AluSg SINE Alu -3 307 6 2396 73 0 13 chrX 81294753 81295068 -95679072 - AluY SINE Alu 0 311 1 25 0 0 0 chrX 81296875 81296900 -95677240 + AT_rich Low_complexity Low_complexity 1 25 0 3283 72 13 17 chrX 81297459 81297918 -95676222 - L1PA8 LINE L1 -13 6159 5703 261 139 0 0 chrX 81298041 81298084 -95676056 + (GAA)n Simple_repeat Simple_repeat 2 44 0 930 137 0 16 chrX 81298089 81298271 -95675869 + (GGA)n Simple_repeat Simple_repeat 2 180 0 261 98 0 0 chrX 81298289 81298330 -95675810 + (CAG)n Simple_repeat Simple_repeat 2 42 0 231 114 0 0 chrX 81298330 81298365 -95675775 + (GGA)n Simple_repeat Simple_repeat 3 37 0 417 20 0 0 chrX 81298696 81298746 -95675394 + (TA)n Simple_repeat Simple_repeat 1 50 0 979 88 7 0 chrX 81299246 81299394 -95674746 - L1PBa LINE L1 -6692 171 23 432 159 11 119 chrX 81299409 81299585 -95674555 - L1MCa LINE L1 -5226 1200 1044 3920 174 21 21 chrX 81299775 81300497 -95673643 - MER72 LTR ERV1 0 722 1 350 320 40 0 chrX 81300628 81300753 -95673387 - MIR SINE MIR -72 190 61 186 143 0 0 chrX 81302243 81302278 -95671862 + (TG)n Simple_repeat Simple_repeat 2 36 0 2129 102 29 9 chrX 81302316 81302659 -95671481 + L1MA1 LINE L1 5953 6302 0 804 203 6 0 chrX 81302767 81302944 -95671196 + L1MA4 LINE L1 6121 6298 -2 189 175 0 0 chrX 81303984 81304024 -95670116 + T-rich Low_complexity Low_complexity 1 40 0 225 222 28 0 chrX 81304711 81304783 -95669357 - L1MDa LINE L1 -2930 3610 3537 884 209 0 12 chrX 81304783 81304946 -95669194 - FRAM SINE Alu -19 157 1 484 232 149 8 chrX 81304949 81305190 -95668950 - L1MDa LINE L1 -3007 3533 3259 * 808 220 23 27 chrX 81305173 81305432 -95668708 - L1MDa LINE L1 -3617 2923 2666 716 205 8 0 chrX 81305477 81305604 -95668536 - FLAM_A SINE Alu -5 128 1 1547 248 71 101 chrX 81305652 81305856 -95668284 - L1MDa LINE L1 -3905 2635 2426 2294 93 3 3 chrX 81305856 81306166 -95667974 - AluY SINE Alu -1 310 1 1547 248 71 101 chrX 81306166 81307264 -95666876 - L1MDa LINE L1 -4114 2426 1372 3857 132 26 5 chrX 81307308 81308146 -95665994 - L1PA15 LINE L1 -2 6163 5254 233 213 40 0 chrX 81308153 81308228 -95665912 - L1MDa LINE L1 -5185 1355 1278 201 74 0 0 chrX 81308312 81308339 -95665801 + (T)n Simple_repeat Simple_repeat 1 27 0 5925 149 35 3 chrX 81308354 81309007 -95665133 - L1PB1 LINE L1 -3 6148 5517 199 70 23 23 chrX 81309007 81309050 -95665090 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2283 70 0 7 chrX 81309050 81309336 -95664804 - AluY SINE Alu -27 284 1 5925 149 35 3 chrX 81309336 81309513 -95664627 - L1PB1 LINE L1 -634 5517 5347 189 74 0 0 chrX 81309513 81309540 -95664600 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 5925 149 35 3 chrX 81309540 81310344 -95663796 - L1PB1 LINE L1 -804 5347 4472 254 297 39 47 chrX 81310901 81311029 -95663111 - L1MDa LINE L1 -5882 648 522 546 270 159 0 chrX 81311099 81311288 -95662852 - LTR50 LTR ERVL -291 504 286 2330 283 48 49 chrX 81311330 81312268 -95661872 - L2 LINE L2 -569 2745 1809 297 385 17 0 chrX 81312986 81313103 -95661037 - MIR3 SINE MIR -29 179 61 293 274 0 14 chrX 81313193 81313266 -95660874 + CT-rich Low_complexity Low_complexity 2 73 0 305 377 7 7 chrX 81313645 81313783 -95660357 + MIR SINE MIR 40 177 -85 21 36 0 0 chrX 81318529 81318557 -95655583 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chrX 81319050 81319092 -95655048 + AT_rich Low_complexity Low_complexity 1 42 0 216 205 205 13 chrX 81319874 81319952 -95654188 + MIR SINE MIR 133 225 -37 341 75 19 0 chrX 81320299 81320352 -95653788 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 655 212 0 15 chrX 81320729 81320861 -95653279 - FRAM SINE Alu -15 161 32 893 110 0 8 chrX 81320900 81321027 -95653113 - THE1B LTR MaLR 0 364 239 3413 174 77 7 chrX 81321027 81322181 -95651959 + L1PA12 LINE L1 2393 3631 -3953 5925 109 14 2 chrX 81322181 81323169 -95650971 + L1PA14 LINE L1 5161 6161 0 1111 86 0 25 chrX 81323174 81323336 -95650804 + L1MA2 LINE L1 6143 6300 -4 1061 233 59 79 chrX 81324594 81325149 -95648991 + MER39 LTR ERV1 1 707 0 215 277 0 31 chrX 81325895 81325960 -95648180 + CT-rich Low_complexity Low_complexity 4 66 0 7993 192 10 60 chrX 81326349 81326594 -95647546 - L1PA16 LINE L1 -4 6162 5906 2113 119 51 17 chrX 81326594 81326946 -95647194 + THE1B LTR MaLR 1 364 0 11235 104 11 0 chrX 81326946 81328508 -95645632 + THE1B-int LTR MaLR 1 1580 0 1875 148 98 21 chrX 81328508 81328846 -95645294 + THE1B LTR MaLR 1 364 0 7993 192 10 60 chrX 81328846 81331596 -95642544 - L1PA16 LINE L1 -257 5909 3319 240 328 132 35 chrX 81331738 81332049 -95642091 + L3b LINE CR1 1129 1469 -114 2219 130 14 27 chrX 81332525 81332894 -95641246 + THE1B LTR MaLR 1 364 0 10763 116 12 0 chrX 81332894 81334455 -95639685 + THE1B-int LTR MaLR 1 1580 0 2123 149 5 35 chrX 81334455 81334830 -95639310 + THE1B LTR MaLR 1 364 0 265 383 13 7 chrX 81335681 81335830 -95638310 - MIR3 SINE MIR -21 187 38 397 294 204 27 chrX 81335902 81336123 -95638017 + MIR SINE MIR 2 261 -1 204 289 99 25 chrX 81337552 81337673 -95636467 - MER5B DNA MER1_type -48 130 1 5696 138 43 27 chrX 81338261 81339201 -95634939 + L1MA5 LINE L1 5039 5997 -303 2394 69 7 0 chrX 81339201 81339506 -95634634 + AluSp SINE Alu 1 307 -6 5696 138 43 27 chrX 81339506 81339810 -95634330 + L1MA5 LINE L1 5997 6294 -6 1791 206 98 17 chrX 81339898 81340365 -95633775 - MLT1D LTR MaLR 0 505 1 27 29 0 0 chrX 81341883 81341917 -95632223 + AT_rich Low_complexity Low_complexity 1 34 0 6285 95 7 5 chrX 81341921 81343287 -95630853 - L1PA10 LINE L1 -16 6152 4785 2332 81 0 19 chrX 81345190 81345500 -95628640 - AluSc SINE Alu -5 304 1 2154 127 0 0 chrX 81345601 81345892 -95628248 - AluSx SINE Alu -21 291 1 26 30 0 0 chrX 81346451 81346484 -95627656 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chrX 81346609 81346630 -95627510 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 81347509 81347537 -95626603 + AT_rich Low_complexity Low_complexity 1 28 0 198 239 0 0 chrX 81349666 81349737 -95624403 + GA-rich Low_complexity Low_complexity 2 72 0 374 300 73 1 chrX 81349825 81349987 -95624153 - MIR SINE MIR -48 214 44 1983 149 0 46 chrX 81350967 81351290 -95622850 + AluJb SINE Alu 1 308 -4 628 107 57 0 chrX 81352894 81353016 -95621124 - L1M LINE L1 -916 5384 5256 1988 139 3 26 chrX 81353030 81353375 -95620765 + L1M1 LINE L1 5395 5731 -569 388 250 0 30 chrX 81353375 81353475 -95620665 - Cheshire DNA MER1_type -1376 1044 948 439 0 48 16 chrX 81353721 81353783 -95620357 + (TTTTA)n Simple_repeat Simple_repeat 4 67 0 747 188 0 8 chrX 81353783 81353911 -95620229 - FRAM SINE Alu -30 146 20 323 322 8 17 chrX 81353976 81354094 -95620046 + L2 LINE L2 3196 3312 -1 4357 147 26 3 chrX 81354736 81355431 -95618709 - MER50 LTR ERV1 -23 711 1 2265 88 0 7 chrX 81355593 81355887 -95618253 + AluY SINE Alu 1 292 -19 2177 131 48 32 chrX 81356387 81356762 -95617378 - LTR8 LTR ERV1 -1 690 310 5010 132 54 8 chrX 81356782 81357580 -95616560 - THE1C-int LTR MaLR -745 835 1 1794 130 104 26 chrX 81357581 81357928 -95616212 - THE1C LTR MaLR -1 374 1 944 129 28 62 chrX 81357928 81358106 -95616034 - LTR8 LTR ERV1 -519 172 1 2249 114 0 0 chrX 81358451 81358749 -95615391 - AluSq SINE Alu -10 303 6 23 0 0 0 chrX 81359360 81359383 -95614757 + AT_rich Low_complexity Low_complexity 1 23 0 2075 139 0 0 chrX 81359383 81359678 -95614462 - AluSq SINE Alu -16 297 3 186 43 0 0 chrX 81359680 81359703 -95614437 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 2237 118 0 0 chrX 81360768 81361072 -95613068 + AluSg SINE Alu 1 304 -6 614 257 131 47 chrX 81361098 81361312 -95612828 - MIR SINE MIR -26 236 5 261 0 0 0 chrX 81361362 81361391 -95612749 + (TA)n Simple_repeat Simple_repeat 1 29 0 2022 176 114 5 chrX 81361600 81361986 -95612154 - MSTA LTR MaLR 0 428 1 8755 159 6 47 chrX 81361987 81363084 -95611056 - MSTA-int LTR MaLR -1 1579 571 2402 97 0 3 chrX 81363084 81363392 -95610748 - AluY SINE Alu -4 307 1 8755 159 6 47 chrX 81363392 81363939 -95610201 - MSTA-int LTR MaLR -1009 571 3 1956 158 124 16 chrX 81363941 81364327 -95609813 - MSTA LTR MaLR 0 428 1 1961 177 0 0 chrX 81364860 81365165 -95608975 - AluSx SINE Alu -7 305 1 219 88 0 0 chrX 81365179 81365213 -95608927 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2194 94 3 0 chrX 81365215 81365503 -95608637 - AluSp SINE Alu -24 289 1 627 268 59 45 chrX 81366164 81366384 -95607756 - MIR SINE MIR -39 223 1 233 320 147 26 chrX 81367276 81367432 -95606708 + MIR SINE MIR 73 247 -15 1415 223 3 3 chrX 81367620 81367911 -95606229 + AluJo SINE Alu 1 291 -21 44638 35 2 1 chrX 81367915 81374066 -95600074 + L1PA3 LINE L1 1 6155 0 22 35 0 0 chrX 81374066 81374095 -95600045 + AT_rich Low_complexity Low_complexity 1 29 0 441 0 0 0 chrX 81374132 81374181 -95599959 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 0 0 0 chrX 81374567 81374590 -95599550 + AT_rich Low_complexity Low_complexity 1 23 0 2150 113 10 0 chrX 81374695 81374987 -95599153 - AluSq SINE Alu -18 295 1 924 196 6 0 chrX 81375831 81376010 -95598130 - FRAM SINE Alu -4 172 1 212 330 134 10 chrX 81376261 81376358 -95597782 + L2 LINE L2 3125 3233 -39 692 332 17 13 chrX 81376452 81376684 -95597456 + MIR SINE MIR 19 251 -11 1299 231 104 3 chrX 81377265 81377629 -95596511 + MER57A LTR ERV1 3 403 0 259 189 113 0 chrX 81378592 81378645 -95595495 - MIR SINE MIR -109 99 41 2682 174 14 124 chrX 81378940 81379652 -95594488 - MER39 LTR ERV1 0 707 74 626 315 8 43 chrX 81381332 81381567 -95592573 + MIR SINE MIR 2 228 -34 549 60 84 0 chrX 81383263 81383474 -95590666 + (TA)n Simple_repeat Simple_repeat 1 228 0 28 0 0 0 chrX 81385558 81385586 -95588554 + AT_rich Low_complexity Low_complexity 1 28 0 2253 67 3 0 chrX 81385586 81385868 -95588272 - AluY SINE Alu -28 283 1 186 43 0 0 chrX 81387419 81387442 -95586698 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chrX 81388021 81388044 -95586096 + AT_rich Low_complexity Low_complexity 1 23 0 31 82 0 0 chrX 81390009 81390082 -95584058 + AT_rich Low_complexity Low_complexity 1 73 0 584 273 20 87 chrX 81390156 81390409 -95583731 + MIR SINE MIR 27 262 0 253 317 14 63 chrX 81391324 81391466 -95582674 + MIR SINE MIR 125 259 -3 253 252 96 61 chrX 81391540 81391655 -95582485 + MIR SINE MIR 143 261 -1 1067 230 197 111 chrX 81392853 81393441 -95580699 - MLT1E2 LTR MaLR -9 617 7 24 53 0 0 chrX 81393550 81393588 -95580552 + AT_rich Low_complexity Low_complexity 1 38 0 328 248 96 0 chrX 81394616 81394741 -95579399 - L1MD1 LINE L1 -2 6240 6104 * 589 153 0 20 chrX 81394740 81394838 -95579302 - L1MD2 LINE L1 -197 6162 6067 965 88 0 8 chrX 81394838 81394963 -95579177 + AluSg/x SINE Alu 171 294 -18 3409 236 67 17 chrX 81394963 81395118 -95579022 - L1MD2 LINE L1 -282 6077 5931 703 203 0 0 chrX 81395118 81395236 -95578904 + FLAM_A SINE Alu 1 118 -15 3409 236 67 17 chrX 81395236 81395625 -95578515 - L1MD2 LINE L1 -428 5931 5563 180 0 0 0 chrX 81395625 81395645 -95578495 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3409 236 67 17 chrX 81395645 81396488 -95577652 - L1MD2 LINE L1 -796 5563 4617 782 253 43 40 chrX 81397418 81397671 -95576469 - MIR SINE MIR 0 262 9 256 167 21 0 chrX 81397668 81397716 -95576424 + L2 LINE L2 3265 3313 0 * 231 385 37 30 chrX 81398356 81398491 -95575649 + L2 LINE L2 3137 3272 0 2175 109 6 6 chrX 81399192 81399504 -95574636 - AluSx SINE Alu 0 312 1 28 48 0 0 chrX 81399608 81399650 -95574490 + AT_rich Low_complexity Low_complexity 1 42 0 252 275 125 0 chrX 81399781 81399861 -95574279 - MIR SINE MIR -94 168 79 1519 203 97 32 chrX 81400296 81400729 -95573411 - MLT1C LTR MaLR 0 467 7 1358 117 26 9 chrX 81401289 81401519 -95572621 - L1MA4 LINE L1 0 6300 6067 2012 95 6 44 chrX 81401541 81401857 -95572283 - AluSx SINE Alu -8 304 1 267 103 0 0 chrX 81401938 81401977 -95572163 + (TA)n Simple_repeat Simple_repeat 1 39 0 2634 185 14 84 chrX 81403153 81403881 -95570259 + L1MB7 LINE L1 5499 6175 -9 453 290 173 14 chrX 81403896 81404110 -95570030 - MIR SINE MIR 0 262 15 363 239 0 104 chrX 81404191 81404325 -95569815 - L2 LINE L2 -1 3312 3193 587 294 36 26 chrX 81404332 81404526 -95569614 + MIR SINE MIR 18 213 -49 186 133 0 0 chrX 81404607 81404637 -95569503 + (CAT)n Simple_repeat Simple_repeat 3 32 0 224 367 13 25 chrX 81404688 81404767 -95569373 - MIR SINE MIR -115 93 16 222 37 0 0 chrX 81405228 81405255 -95568885 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 238 0 0 chrX 81405297 81405339 -95568801 - L2 LINE L2 0 3313 3272 6108 160 20 3 chrX 81405997 81407101 -95567039 - L1 LINE L1 -1195 4951 3829 * 17326 48 58 4 chrX 81407095 81409323 -95564817 - L1P LINE L1 -3797 2349 1 447 145 0 0 chrX 81409324 81409393 -95564747 - L1 LINE L1 -2301 3845 3777 2497 115 6 0 chrX 81409399 81409756 -95564384 - L1PA11 LINE L1 -2 6172 5814 2426 142 49 2 chrX 81409802 81410211 -95563929 - MSTA LTR MaLR 0 428 1 8615 178 42 6 chrX 81410211 81411217 -95562923 - MSTA-int LTR MaLR 0 1651 566 2352 89 0 0 chrX 81411217 81411520 -95562620 - AluY SINE Alu -8 303 1 8615 178 42 6 chrX 81411520 81412107 -95562033 - MSTA-int LTR MaLR -1085 566 1 2580 134 34 2 chrX 81412113 81412522 -95561618 - MSTA LTR MaLR -6 422 1 4709 216 25 15 chrX 81412534 81413553 -95560587 - L1M1 LINE L1 -6535 1030 1 514 114 0 0 chrX 81416514 81416593 -95557547 - MADE1 DNA Mariner -1 79 1 180 152 0 0 chrX 81417384 81417417 -95556723 + GA-rich Low_complexity Low_complexity 2 34 0 606 169 19 52 chrX 81417750 81417904 -95556236 - MER92A LTR ERV1 0 412 264 769 200 0 27 chrX 81417937 81418087 -95556053 - FRAM SINE Alu -30 146 1 598 284 6 12 chrX 81418146 81418315 -95555825 - MER92A LTR ERV1 -234 178 11 204 231 0 0 chrX 81418421 81418473 -95555667 + (TA)n Simple_repeat Simple_repeat 1 52 0 655 217 132 0 chrX 81418486 81418638 -95555502 - MIR SINE MIR -59 203 32 2224 114 3 0 chrX 81419592 81419898 -95554242 - AluSq SINE Alu -6 307 1 1123 223 109 30 chrX 81420549 81420916 -95553224 - MSTA LTR MaLR 0 396 1 1519 122 5 5 chrX 81421149 81421362 -95552778 - AluSg/x SINE Alu -15 297 85 25 0 0 0 chrX 81422558 81422583 -95551557 + AT_rich Low_complexity Low_complexity 1 25 0 1843 117 22 50 chrX 81422961 81423278 -95550862 - AluSx SINE Alu -4 308 1 2929 103 64 0 chrX 81423343 81423780 -95550360 - MER4C LTR ERV1 0 465 1 2167 161 35 54 chrX 81423780 81424185 -95549955 - MER34C LTR ERV1 -134 451 55 2151 145 53 3 chrX 81424185 81424544 -95549596 - MER51B LTR ERV1 0 377 1 2167 161 35 54 chrX 81424544 81424598 -95549542 - MER34C LTR ERV1 -530 55 1 205 368 0 0 chrX 81425569 81425637 -95548503 - L2 LINE L2 -2 3270 3203 2555 99 58 21 chrX 81425938 81426370 -95547770 - LTR7 LTR ERV1 -2 448 1 2396 78 65 5 chrX 81426370 81426740 -95547400 - HERVH LTR ERV1 0 7713 7322 1351 131 18 9 chrX 81426738 81426959 -95547181 - HERVH LTR ERV1 -1894 5819 5597 * 4235 147 3 1 chrX 81426956 81427617 -95546523 - HERVH LTR ERV1 -2564 5149 4488 3259 122 6 2 chrX 81427619 81428119 -95546021 - HERVH LTR ERV1 -3720 3993 3492 788 170 27 0 chrX 81428109 81428256 -95545884 - HERVH LTR ERV1 -4423 3290 3140 * 20262 100 15 7 chrX 81428253 81431214 -95542926 - HERVH LTR ERV1 -4729 2984 1 2545 99 58 21 chrX 81431216 81431648 -95542492 - LTR7 LTR ERV1 -2 448 1 2417 82 3 0 chrX 81431660 81431964 -95542176 - AluSp SINE Alu -8 305 1 1821 123 3 134 chrX 81432740 81433121 -95541019 + MER7A DNA MER2_type 1 329 -17 1619 138 107 0 chrX 81433122 81433417 -95540723 + AluSg SINE Alu 1 322 0 28 29 0 0 chrX 81433621 81433656 -95540484 + AT_rich Low_complexity Low_complexity 1 35 0 252 211 0 0 chrX 81434706 81434758 -95539382 - L2 LINE L2 0 3313 3262 197 255 0 21 chrX 81434864 81434958 -95539182 + GA-rich Low_complexity Low_complexity 1 92 0 23 33 0 0 chrX 81435255 81435285 -95538855 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 81437261 81437282 -95536858 + AT_rich Low_complexity Low_complexity 1 21 0 2439 72 3 0 chrX 81438100 81438406 -95535734 - AluSp SINE Alu -6 307 1 3005 107 77 8 chrX 81438569 81439047 -95535093 - MER9 LTR ERVK 0 511 1 277 218 36 18 chrX 81439290 81439400 -95534740 + A-rich Low_complexity Low_complexity 3 114 0 396 191 0 135 chrX 81439720 81439846 -95534294 + MIR SINE MIR 124 232 -30 1967 119 3 0 chrX 81440024 81440318 -95533822 - L1PA8 LINE L1 0 6172 5878 2110 145 119 10 chrX 81440605 81440991 -95533149 + MSTA LTR MaLR 1 428 0 1107 79 118 0 chrX 81441241 81441393 -95532747 - AluJb SINE Alu -10 302 133 23 0 0 0 chrX 81442038 81442061 -95532079 + AT_rich Low_complexity Low_complexity 1 23 0 1788 166 0 25 chrX 81443743 81444063 -95530077 - AluJb SINE Alu 0 312 1 216 135 0 0 chrX 81444721 81444758 -95529382 + (A)n Simple_repeat Simple_repeat 1 37 0 2383 57 3 0 chrX 81446196 81446495 -95527645 + AluY SINE Alu 1 300 -11 1631 168 63 20 chrX 81446602 81446953 -95527187 + L1MC3 LINE L1 7400 7765 -20 1891 136 0 7 chrX 81446976 81447297 -95526843 - AluSq SINE Alu 0 319 1 1941 231 49 49 chrX 81448165 81448586 -95525554 - L1M4 LINE L1 -1815 5142 4722 381 22 0 0 chrX 81448586 81448632 -95525508 + (TG)n Simple_repeat Simple_repeat 2 47 0 1941 231 49 49 chrX 81448632 81448651 -95525489 - L1M4 LINE L1 -2235 4722 4704 2173 97 3 10 chrX 81448651 81448950 -95525190 + AluSq SINE Alu 1 297 -16 1941 231 49 49 chrX 81448950 81449101 -95525039 - L1M4 LINE L1 -2252 4705 4550 * 5139 130 5 0 chrX 81449093 81449872 -95524268 - L1PA15 LINE L1 -2 6814 6032 11601 208 13 8 chrX 81449877 81451570 -95522570 - L1PA15 LINE L1 -869 5928 4216 4671 79 23 24 chrX 81451570 81452231 -95521909 - PABL_A LTR ERV1 0 660 1 11601 208 13 8 chrX 81452231 81453103 -95521037 - L1PA15 LINE L1 -2581 4216 3350 286 24 0 0 chrX 81453108 81453149 -95520991 + L1MA3 LINE L1 6265 6305 0 1172 206 0 72 chrX 81453157 81453303 -95520837 - L1PA15 LINE L1 -5026 1761 1606 2023 119 14 3 chrX 81453303 81453629 -95520511 - AluSg SINE Alu 0 330 2 1172 206 0 72 chrX 81453629 81453815 -95520325 - L1PA15 LINE L1 -5181 1606 1451 * 2791 247 9 28 chrX 81453807 81454486 -95519654 - L1PA15 LINE L1 -5920 867 202 360 0 0 0 chrX 81454500 81454540 -95519600 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 986 208 22 18 chrX 81454540 81454758 -95519382 - L1M4 LINE L1 -2406 4551 4330 1683 310 49 19 chrX 81454759 81455375 -95518765 - L1M4 LINE L1 -6215 644 11 195 359 28 21 chrX 81455479 81455621 -95518519 - L2 LINE L2 -498 2816 2674 380 370 57 30 chrX 81455848 81456251 -95517889 - L2 LINE L2 -924 2390 1977 25 0 0 0 chrX 81457060 81457085 -95517055 + AT_rich Low_complexity Low_complexity 1 25 0 320 333 0 39 chrX 81457417 81457570 -95516570 - MIR3 SINE MIR -1 207 61 1248 193 43 114 chrX 81458114 81458508 -95515632 - MLT1B LTR MaLR -24 366 1 7535 224 49 29 chrX 81458805 81459515 -95514625 + L1MB3 LINE L1 2667 3362 -2821 2006 102 0 35 chrX 81459515 81459800 -95514340 + AluSg SINE Alu 3 277 -33 7535 224 49 29 chrX 81459800 81462538 -95511602 + L1MB3 LINE L1 3362 6183 0 1795 118 78 0 chrX 81463265 81463536 -95510604 - AluSq SINE Alu -15 298 7 183 269 0 77 chrX 81465988 81466066 -95508074 - L3 LINE CR1 -1328 249 178 330 287 80 40 chrX 81466124 81466274 -95507866 - MIR SINE MIR -98 164 9 6728 145 49 8 chrX 81466436 81467618 -95506522 - Tigger3b DNA MER2_type 0 1231 1 1660 197 3 0 chrX 81468394 81468689 -95505451 - AluJb SINE Alu -16 296 1 255 276 89 49 chrX 81468933 81469056 -95505084 - L2 LINE L2 -9 3263 3136 21 57 0 0 chrX 81469056 81469091 -95505049 + AT_rich Low_complexity Low_complexity 1 35 0 333 322 73 8 chrX 81470551 81470796 -95503344 + MIR SINE MIR 2 262 0 231 170 0 0 chrX 81470798 81470845 -95503295 + (TAG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chrX 81472171 81472192 -95501948 + AT_rich Low_complexity Low_complexity 1 21 0 828 152 8 0 chrX 81472387 81472512 -95501628 - FLAM_C SINE Alu -17 126 1 341 309 27 40 chrX 81472512 81472661 -95501479 + MIR SINE MIR 116 262 0 24 32 0 0 chrX 81472671 81472702 -95501438 + AT_rich Low_complexity Low_complexity 1 31 0 291 54 0 0 chrX 81473248 81473285 -95500855 + (TC)n Simple_repeat Simple_repeat 2 38 0 5208 141 18 21 chrX 81473507 81474038 -95500102 - MER49 LTR ERV1 -1 922 392 2528 51 0 13 chrX 81474038 81474349 -95499791 - AluY SINE Alu -4 307 1 5208 141 18 21 chrX 81474349 81474741 -95499399 - MER49 LTR ERV1 -531 392 1 232 326 72 36 chrX 81475207 81475400 -95498740 - MIR SINE MIR -52 210 11 21 0 0 0 chrX 81476408 81476429 -95497711 + AT_rich Low_complexity Low_complexity 1 21 0 835 20 0 0 chrX 81476429 81476527 -95497613 - L1PA3 LINE L1 -3 6152 6055 2703 137 50 0 chrX 81477539 81477977 -95496163 - L1PA15 LINE L1 -13 6152 5693 796 228 106 129 chrX 81478868 81479399 -95494741 - MLT1H1 LTR MaLR -3 552 3 31 44 0 0 chrX 81479448 81479493 -95494647 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chrX 81479493 81479524 -95494616 + (GA)n Simple_repeat Simple_repeat 2 32 0 743 332 19 25 chrX 81480842 81481161 -95492979 + L1ME1 LINE L1 35 351 -6045 * 3380 257 37 13 chrX 81481158 81482246 -95491894 + L1ME1 LINE L1 3056 4169 -2046 4877 115 8 1 chrX 81482246 81482988 -95491152 + L1MA3 LINE L1 5559 6305 0 2779 245 57 26 chrX 81483003 81483944 -95490196 + L1ME1 LINE L1 5260 6230 -5 655 189 7 7 chrX 81484117 81484270 -95489870 + CT-rich Low_complexity Low_complexity 2 154 0 215 200 44 0 chrX 81485236 81485281 -95488859 + (CATG)n Simple_repeat Simple_repeat 4 50 0 363 44 0 0 chrX 81485574 81485619 -95488521 + (CAG)n Simple_repeat Simple_repeat 1 45 0 545 275 23 0 chrX 81485623 81485754 -95488386 + MER5A DNA MER1_type 50 183 -6 389 353 5 33 chrX 81485950 81486134 -95488006 + MIR SINE MIR 41 219 -43 4330 150 23 1 chrX 81486832 81487558 -95486582 + Tigger2 DNA MER2_type 3 744 -1974 1625 123 20 4 chrX 81487625 81487878 -95486262 + Tigger2 DNA MER2_type 2462 2718 0 345 281 141 8 chrX 81490318 81490439 -95483701 - L2 LINE L2 -2 3270 3134 1993 228 0 0 chrX 81491783 81492252 -95481888 + L1 LINE L1 4652 5120 -1026 2628 137 31 0 chrX 81492253 81492668 -95481472 - MSTA LTR MaLR 0 428 1 8029 189 45 2 chrX 81492668 81494247 -95479893 - MSTA-int LTR MaLR 0 1651 6 2552 143 34 0 chrX 81494252 81494666 -95479474 - MSTA LTR MaLR 0 428 1 5000 163 13 18 chrX 81494666 81495721 -95478419 + L1PA16 LINE L1 5117 6165 -1 23 33 0 0 chrX 81497128 81497158 -95476982 + AT_rich Low_complexity Low_complexity 1 30 0 185 370 41 0 chrX 81497233 81497306 -95476834 - MIR SINE MIR -114 94 19 28 0 0 0 chrX 81499979 81500007 -95474133 + AT_rich Low_complexity Low_complexity 1 28 0 267 247 13 26 chrX 81501189 81501266 -95472874 - MIR SINE MIR -183 79 4 2031 122 3 3 chrX 81501359 81501690 -95472450 - AluSq SINE Alu 0 331 1 711 255 35 53 chrX 81502258 81502479 -95471661 + L2 LINE L2 2633 2849 -465 2040 151 5 45 chrX 81502479 81502857 -95471283 + MER47A DNA MER2_type 4 366 0 711 255 35 53 chrX 81502857 81502917 -95471223 + L2 LINE L2 2849 2909 -405 2917 145 58 2 chrX 81502925 81503456 -95470684 - L1PBa LINE L1 -4921 1942 1382 978 223 0 0 chrX 81503442 81503639 -95470501 - L1PBa LINE L1 -6666 197 1 * 245 286 11 44 chrX 81505059 81505150 -95468990 - MIR3 SINE MIR -4 204 117 3032 153 46 9 chrX 81505182 81505899 -95468241 - L1PBa LINE L1 -4921 1942 1 375 346 73 28 chrX 81507300 81507479 -95466661 - MIR3 SINE MIR -7 201 15 329 259 56 19 chrX 81507735 81507843 -95466297 - MARNA DNA Mariner -355 231 120 2632 17 30 0 chrX 81507999 81508301 -95465839 + AluYa5 SINE Alu 1 311 0 6257 45 7 0 chrX 81609054 81609829 -95364311 - L1PA4 LINE L1 -15 6140 5361 * 7630 31 0 0 chrX 81609828 81610752 -95363388 + L1P LINE L1 4357 5280 -866 5270 106 31 0 chrX 81610744 81611592 -95362548 + L1PBa LINE L1 1116 2132 -4731 * 5550 246 17 19 chrX 81611770 81613808 -95360332 + L1M3de LINE L1 2004 4124 -2608 3663 120 16 17 chrX 81613954 81614708 -95359432 + L1P5 LINE L1 5037 5795 -356 2789 95 5 17 chrX 81614708 81615111 -95359029 + L1PB1 LINE L1 5745 6150 -1 265 174 0 0 chrX 81615126 81615172 -95358968 + MER63 DNA MER1_type 949 994 -68 1006 313 27 12 chrX 81615451 81615786 -95358354 - MLT1J LTR MaLR -171 340 1 434 317 73 8 chrX 81615787 81616046 -95358094 - L1 LINE L1 -2451 3695 3420 500 300 110 28 chrX 81616058 81616352 -95357788 - L1 LINE L1 -2754 3392 3074 570 184 9 0 chrX 81616461 81616570 -95357570 - L1PA10 LINE L1 -17 6151 6042 357 257 115 9 chrX 81618381 81618494 -95355646 - MIR SINE MIR -91 171 47 250 348 20 100 chrX 81618737 81618987 -95355153 - L2 LINE L2 -90 3182 2953 773 171 160 6 chrX 81619364 81619539 -95354601 - AluSg SINE Alu -108 202 1 255 364 27 9 chrX 81619734 81619844 -95354296 - MIR SINE MIR -44 218 107 648 224 0 0 chrX 81620182 81620307 -95353833 + FLAM_A SINE Alu 1 125 -8 556 289 58 14 chrX 81620492 81620838 -95353302 - L1ME LINE L1 -299 5891 5397 1743 243 96 48 chrX 81621713 81622543 -95351597 - L1ME LINE L1 -4924 1472 603 270 29 0 0 chrX 81622543 81622577 -95351563 - L1P LINE L1 -811 5352 5319 4584 105 41 3 chrX 81622579 81623263 -95350877 + L1PA14 LINE L1 5450 6159 -2 9287 189 43 11 chrX 81623263 81625924 -95348216 + L1MA8 LINE L1 3263 6008 -283 247 271 0 2 chrX 81626038 81626142 -95347998 + L1P LINE L1 4944 5046 -1100 540 295 40 77 chrX 81626429 81626741 -95347399 + L1ME4a LINE L1 5415 5708 -413 2156 86 0 0 chrX 81626741 81627020 -95347120 + AluSx SINE Alu 2 280 -32 540 295 40 77 chrX 81627020 81627137 -95347003 + L1ME4a LINE L1 5708 5828 -293 189 107 0 0 chrX 81629453 81629481 -95344659 + (CAT)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chrX 81629897 81629928 -95344212 + AT_rich Low_complexity Low_complexity 1 31 0 809 230 0 72 chrX 81630081 81630316 -95343824 - MER20 DNA MER1_type 0 219 2 363 270 214 0 chrX 81630366 81630486 -95343654 + MIR SINE MIR 2 148 -114 890 291 44 0 chrX 81630486 81630737 -95343403 + MIR SINE MIR 1 262 0 320 332 48 37 chrX 81631024 81631211 -95342929 + MIR SINE MIR 32 220 -42 2224 111 0 3 chrX 81631238 81631544 -95342596 + AluSc SINE Alu 1 305 -4 32 57 0 0 chrX 81631878 81631931 -95342209 + AT_rich Low_complexity Low_complexity 1 53 0 1953 233 99 6 chrX 81633666 81634182 -95339958 + MLT1F1 LTR MaLR 1 564 -3 377 205 62 18 chrX 81634418 81634530 -95339610 + L1ME4a LINE L1 5983 6099 -22 207 227 0 0 chrX 81634531 81634575 -95339565 - L2 LINE L2 -8 3305 3262 757 306 123 19 chrX 81634601 81635049 -95339091 - L2 LINE L2 -44 3269 2768 3757 159 22 0 chrX 81635828 81636521 -95337619 + L1MA4 LINE L1 5589 6296 -4 191 394 19 19 chrX 81636701 81636856 -95337284 + L2 LINE L2 1153 1307 -2007 256 305 110 24 chrX 81636925 81637007 -95337133 - L2 LINE L2 -16 3256 3168 1511 216 36 36 chrX 81637022 81637498 -95336642 - Charlie1 DNA MER1_type -1 2760 2285 232 231 19 0 chrX 81637672 81637724 -95336416 + C-rich Low_complexity Low_complexity 5 57 0 5751 155 14 25 chrX 81641076 81641215 -95332925 - L1MA7 LINE L1 -1 6290 6151 1381 206 6 60 chrX 81641215 81641531 -95332609 - AluJo SINE Alu -3 299 1 5751 155 14 25 chrX 81641531 81642725 -95331415 - L1MA7 LINE L1 -140 6151 4970 1873 145 3 3 chrX 81642761 81643051 -95331089 + AluSx SINE Alu 1 290 -22 475 187 110 35 chrX 81643489 81643635 -95330505 - L1MB7 LINE L1 0 6184 6027 597 315 116 40 chrX 81643697 81644170 -95329970 + LTR33 LTR ERVL 2 510 -11 679 333 44 27 chrX 81645730 81646027 -95328113 + MLT1J2 LTR MaLR 1 302 -148 2024 113 7 0 chrX 81646475 81646786 -95327354 - AluSq SINE Alu 0 313 1 330 75 19 0 chrX 81647426 81647479 -95326661 + L1PA2 LINE L1 6102 6155 0 2817 153 8 20 chrX 81647480 81647978 -95326162 - L1PBa LINE L1 -5738 1125 634 599 168 8 16 chrX 81647971 81648096 -95326044 - L1PBa LINE L1 -6658 205 82 * 887 310 89 29 chrX 81648084 81649248 -95324892 + L1M4 LINE L1 3815 5048 -1098 719 193 153 0 chrX 81649222 81649424 -95324716 + L1MC4 LINE L1 7558 7790 -252 * 32 26 0 0 chrX 81649424 81649463 -95324677 + AT_rich Low_complexity Low_complexity 1 39 0 1847 113 0 0 chrX 81649666 81649949 -95324191 - L1P LINE L1 -1277 4869 4587 2159 38 4 0 chrX 81649949 81650211 -95323929 + L1PA7 LINE L1 5743 6005 -149 1496 145 0 13 chrX 81650224 81650451 -95323689 + AluSg/x SINE Alu 69 292 -18 354 252 59 0 chrX 81650624 81650743 -95323397 + L1M4 LINE L1 5614 5739 -445 458 284 70 76 chrX 81650744 81651258 -95322882 + L1M4 LINE L1 2670 3180 -2966 641 286 15 5 chrX 81651699 81651902 -95322238 - L1ME2 LINE L1 -9 6155 5951 275 143 63 16 chrX 81651904 81651967 -95322173 - L1M4 LINE L1 -1967 4179 4114 1093 245 59 40 chrX 81651969 81652439 -95321701 + MLT1F1 LTR MaLR 3 560 -7 2554 272 74 32 chrX 81652443 81652771 -95321369 - L1M4 LINE L1 -2038 4108 3795 2115 247 87 18 chrX 81652771 81653326 -95320814 + MLT1E LTR MaLR 1 593 0 2554 272 74 32 chrX 81653326 81654381 -95319759 - L1M4 LINE L1 -2351 3795 2667 228 135 0 0 chrX 81654396 81654433 -95319707 + (TA)n Simple_repeat Simple_repeat 1 37 0 256 250 34 11 chrX 81654478 81654566 -95319574 - L1M4 LINE L1 -3642 2504 2415 264 235 44 52 chrX 81654587 81654723 -95319417 - L1M4 LINE L1 -3830 2316 2182 405 238 50 0 chrX 81655376 81655477 -95318663 + FRAM SINE Alu 63 168 -8 2086 114 39 0 chrX 81655603 81655884 -95318256 - AluSc SINE Alu -17 292 1 6395 166 24 56 chrX 81656123 81657444 -95316696 - MER52C LTR ERV1 0 1278 1 792 145 16 91 chrX 81657631 81657817 -95316323 - MER52C-int LTR ERV1 -4097 2166 1995 780 171 6 43 chrX 81657819 81657983 -95316157 - MER52C-int LTR ERV1 -4799 1147 990 * 3747 172 28 18 chrX 81657982 81658667 -95315473 - MER52C-int LTR ERV1 -5593 1498 807 6639 169 18 3 chrX 81658683 81660035 -95314105 - MER52C-int LTR ERV1 -3885 3206 1757 3378 150 32 14 chrX 81660184 81660744 -95313396 - MER52C-int LTR ERV1 -6520 571 2 6765 147 22 62 chrX 81660744 81662075 -95312065 - MER52C LTR ERV1 0 1278 1 6431 170 10 1 chrX 81662926 81664758 -95309382 - L1MA1 LINE L1 0 6302 4456 810 98 21 91 chrX 81664866 81665009 -95309131 - MER57-int LTR ERV1 -67 7024 6892 4494 152 52 29 chrX 81665011 81666611 -95307529 - MER57-int LTR ERV1 -3023 4514 592 1424 170 87 21 chrX 81666589 81666877 -95307263 - MER57-int LTR ERV1 -3926 3611 3305 * 46 33 0 0 chrX 81667075 81667135 -95307005 + AT_rich Low_complexity Low_complexity 1 60 0 208 102 41 0 chrX 81667135 81667184 -95306956 + A-rich Low_complexity Low_complexity 1 51 0 51 58 0 0 chrX 81667184 81667270 -95306870 + AT_rich Low_complexity Low_complexity 1 86 0 2099 128 0 3 chrX 81667678 81667974 -95306166 - AluSg SINE Alu -15 295 1 25 51 0 0 chrX 81667977 81668016 -95306124 + AT_rich Low_complexity Low_complexity 1 39 0 327 269 174 0 chrX 81668033 81668245 -95305895 - L1M4 LINE L1 -748 6817 6569 389 306 80 48 chrX 81668483 81669255 -95304885 - L1M4 LINE L1 -1300 6265 5469 342 211 28 0 chrX 81669268 81669339 -95304801 + MIR SINE MIR 188 260 -2 287 269 54 0 chrX 81669652 81669745 -95304395 + L2 LINE L2 2014 2111 -1203 3569 206 35 9 chrX 81670105 81671276 -95302864 - L1M4 LINE L1 -3021 4544 3338 6201 134 20 30 chrX 81671279 81672355 -95301785 - MER11C LTR ERVK -5 1066 1 4299 142 21 24 chrX 81672355 81673158 -95300982 - L1M4 LINE L1 -4219 3346 2546 * 11810 218 16 7 chrX 81673155 81675465 -95298675 - L1M4 LINE L1 -5222 2343 12 22 0 0 0 chrX 81675584 81675606 -95298534 + AT_rich Low_complexity Low_complexity 1 22 0 201 196 0 0 chrX 81675609 81675655 -95298485 + (TA)n Simple_repeat Simple_repeat 2 47 0 390 43 0 0 chrX 81675773 81675819 -95298321 + L1MA1 LINE L1 6173 6218 -84 293 262 57 97 chrX 81675818 81676116 -95298024 - L1MC4 LINE L1 -277 7765 7480 * 572 255 154 69 chrX 81676254 81676522 -95297618 - MLT1J LTR MaLR -173 338 39 2549 47 0 0 chrX 81676522 81676822 -95297318 + AluY SINE Alu 1 300 -11 572 255 154 69 chrX 81676822 81676859 -95297281 - MLT1J LTR MaLR -472 39 7 983 284 172 11 chrX 81677742 81678179 -95295961 - MLT1J LTR MaLR -4 507 1 543 182 10 0 chrX 81679198 81679297 -95294843 + AluJ/FLAM SINE Alu 1 100 -212 2049 171 43 7 chrX 81679327 81679743 -95294397 - L1MA4A LINE L1 -340 5963 5533 * 2196 204 12 14 chrX 81679741 81680185 -95293955 - L1MA4A LINE L1 -955 5191 4747 2092 136 0 0 chrX 81680185 81680480 -95293660 - AluSg SINE Alu -15 295 1 2196 204 12 14 chrX 81680480 81680521 -95293619 - L1MA4A LINE L1 -1399 4747 4707 3752 141 48 12 chrX 81680521 81680781 -95293359 - L1PA16 LINE L1 0 6166 5917 198 118 0 0 chrX 81680781 81680815 -95293325 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3752 141 48 12 chrX 81680815 81681200 -95292940 - L1PA16 LINE L1 -249 5917 5498 2761 224 41 2 chrX 81681200 81682015 -95292125 + L1PA16 LINE L1 4643 5484 -682 * 10606 232 46 35 chrX 81682013 81687233 -95286907 - L1 LINE L1 -1435 5413 11 2611 84 0 17 chrX 81687543 81687898 -95286242 + THE1A LTR MaLR 3 351 -4 10739 112 27 1 chrX 81687903 81689443 -95284697 + THE1A-int LTR MaLR 1 1580 0 2704 89 0 0 chrX 81689443 81689793 -95284347 + THE1A LTR MaLR 1 350 -5 234 313 60 12 chrX 81689860 81689943 -95284197 - MIR SINE MIR -169 93 7 522 305 65 65 chrX 81690123 81690572 -95283568 - MLT1J LTR MaLR -62 449 1 2652 152 96 50 chrX 81690867 81691525 -95282615 - LTR12 LTR ERV1 0 688 1 215 382 20 10 chrX 81691611 81691713 -95282427 - L2 LINE L2 -212 3060 2958 2112 125 0 0 chrX 81692119 81692416 -95281724 - AluSg SINE Alu -13 297 1 23 0 0 0 chrX 81692499 81692522 -95281618 + AT_rich Low_complexity Low_complexity 1 23 0 311 298 19 30 chrX 81692948 81693115 -95281025 + MIR SINE MIR 21 260 -2 289 265 0 29 chrX 81693998 81694066 -95280074 + MIR SINE MIR 48 113 -149 576 308 32 39 chrX 81695180 81695488 -95278652 + L1ME4a LINE L1 177 482 -6081 1800 287 41 11 chrX 81695552 81696429 -95277711 - L1M4b LINE L1 -3355 3602 2742 1940 258 43 30 chrX 81696825 81697566 -95276574 - L1M4b LINE L1 -4491 2468 1719 2434 152 52 2 chrX 81697566 81697974 -95276166 - MSTA LTR MaLR 0 428 1 1940 258 43 30 chrX 81697974 81698169 -95275971 - L1M4b LINE L1 -5240 1719 1528 1375 240 5 56 chrX 81698172 81698585 -95275555 - L1M4b LINE L1 -5479 1380 989 4058 269 45 22 chrX 81698645 81700656 -95273484 + L1ME4a LINE L1 1046 3247 -3135 1486 217 59 48 chrX 81700656 81701117 -95273023 - MLT1C LTR MaLR 0 467 2 4058 269 45 22 chrX 81701117 81701792 -95272348 + L1ME4a LINE L1 3247 3905 -2477 1038 227 28 49 chrX 81701796 81702082 -95272058 - MLT1A1 LTR MaLR 0 365 86 * 1258 242 61 15 chrX 81702081 81702424 -95271716 - MLT1A1 LTR MaLR -6 359 1 4231 255 45 18 chrX 81702424 81703456 -95270684 - MLT1A1-int LTR MaLR 0 1735 677 1511 167 27 20 chrX 81703461 81703755 -95270385 - MLT1A1-int LTR MaLR -1439 296 1 1019 231 9 13 chrX 81703755 81703980 -95270160 - MLT1A1 LTR MaLR 0 365 142 21137 104 7 0 chrX 81703985 81707882 -95266258 - L1PA8A LINE L1 -13 6118 2195 2123 122 0 0 chrX 81707891 81708187 -95265953 - AluSc SINE Alu -13 296 1 624 216 26 26 chrX 81708190 81708343 -95265797 - MLT1A1 LTR MaLR -212 153 1 499 186 0 59 chrX 81708343 81708443 -95265697 - MLT1A1 LTR MaLR -280 94 1 1150 231 29 29 chrX 81708462 81708804 -95265336 + L1ME4a LINE L1 3928 4269 -2113 2406 253 41 22 chrX 81708804 81709706 -95264434 + L1ME4a LINE L1 4594 5512 -870 * 4115 225 30 14 chrX 81709682 81711446 -95262694 + L1MB7 LINE L1 4625 6417 -3 304 357 55 42 chrX 81711885 81712143 -95261997 - L2 LINE L2 -121 3192 2926 2224 169 45 24 chrX 81712143 81712562 -95261578 - MSTC LTR MaLR 0 428 1 304 357 55 42 chrX 81712562 81712687 -95261453 - L2 LINE L2 -387 2926 2804 1232 268 133 55 chrX 81714246 81714758 -95259382 + MLT1G1 LTR MaLR 44 595 0 842 294 106 31 chrX 81714758 81715118 -95259022 + L2 LINE L2 2270 2656 -658 1339 223 140 28 chrX 81715118 81715517 -95258623 - MSTB2 LTR MaLR -13 444 1 334 343 14 7 chrX 81715591 81715734 -95258406 + L2 LINE L2 2782 2925 -389 300 216 0 0 chrX 81715718 81715769 -95258371 + L2 LINE L2 3253 3303 -10 * 187 303 119 94 chrX 81716058 81716335 -95257805 - L2 LINE L2 -173 3099 2816 390 284 84 26 chrX 81716691 81716881 -95257259 + L1ME4a LINE L1 5954 6154 -203 397 58 0 0 chrX 81716941 81716993 -95257147 - MLT2A1 LTR ERVL -2 451 400 474 50 76 35 chrX 81717002 81717347 -95256793 + (TA)n Simple_repeat Simple_repeat 1 359 0 2608 101 43 13 chrX 81717347 81717744 -95256396 - MLT2A1 LTR ERVL -35 409 1 1270 310 17 8 chrX 81717753 81718105 -95256035 + MLT1F LTR MaLR 39 393 -149 237 121 136 45 chrX 81718181 81718247 -95255893 - LTR48 LTR ERV1 -46 741 670 550 229 20 39 chrX 81718611 81718764 -95255376 + MLT1F LTR MaLR 390 539 -3 24 0 0 0 chrX 81718807 81718831 -95255309 + AT_rich Low_complexity Low_complexity 1 24 0 642 187 0 8 chrX 81718864 81718987 -95255153 + FLAM_C SINE Alu 1 122 -21 357 181 4 40 chrX 81719101 81719205 -95254935 + LTR24B LTR ERV1 1 99 -366 513 247 138 28 chrX 81719280 81719577 -95254563 + LTR24B LTR ERV1 145 569 0 578 227 24 81 chrX 81719591 81719901 -95254239 + LTR24B-int LTR ERV1 16 451 -4672 216 58 39 39 chrX 81719904 81719956 -95254184 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 23 0 0 0 chrX 81720850 81720873 -95253267 + AT_rich Low_complexity Low_complexity 1 23 0 5235 157 29 33 chrX 81721492 81722335 -95251805 - L1PA16 LINE L1 -9 6157 5312 1918 165 17 25 chrX 81722335 81722693 -95251447 - L1PA15 LINE L1 0 6165 5811 5235 157 29 33 chrX 81722693 81723427 -95250713 - L1PA16 LINE L1 -854 5312 4576 578 116 0 0 chrX 81723477 81723563 -95250577 - L1PA15 LINE L1 -568 5598 5513 451 329 41 0 chrX 81723707 81723853 -95250287 + LTR24B-int LTR ERV1 351 502 -4145 270 327 47 54 chrX 81724110 81724388 -95249752 + PABL_B-int LTR ERV1 3207 3482 -3640 326 343 20 36 chrX 81724877 81725128 -95249012 + PABL_B-int LTR ERV1 4718 4964 -3771 200 118 29 0 chrX 81725219 81725253 -95248887 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 285 334 37 40 chrX 81725607 81725896 -95248244 + PABL_B-int LTR ERV1 2142 2373 -2274 192 40 0 0 chrX 81726271 81726296 -95247844 + (A)n Simple_repeat Simple_repeat 1 25 0 349 362 49 41 chrX 81726672 81727180 -95246960 + PABL_B-int LTR ERV1 5633 6144 -978 328 330 9 9 chrX 81727397 81727506 -95246634 + PABL_B-int LTR ERV1 6231 6339 -783 1069 256 65 41 chrX 81728175 81728209 -95245931 + L1PA16 LINE L1 2266 2298 -5276 243 0 0 0 chrX 81728209 81728236 -95245904 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1069 256 65 41 chrX 81728236 81728630 -95245510 + L1PA16 LINE L1 2298 2639 -4935 1900 181 20 88 chrX 81728630 81728822 -95245318 + MSTB LTR MaLR 1 204 -222 2628 108 7 12 chrX 81728822 81729228 -95244912 + L1MA1 LINE L1 5890 6293 -9 1900 181 20 88 chrX 81729228 81729476 -95244664 + MSTB LTR MaLR 204 411 -15 7470 230 11 22 chrX 81729497 81731160 -95242980 + MSTB-int LTR MaLR 7 1651 0 1726 229 57 7 chrX 81731160 81731566 -95242574 + MSTB LTR MaLR 1 426 0 11316 235 32 33 chrX 81731566 81732436 -95241704 + L1PA16 LINE L1 2654 3523 -4081 1922 110 4 0 chrX 81732436 81732691 -95241449 - AluSq SINE Alu -24 289 34 11316 235 32 33 chrX 81732691 81733640 -95240500 + L1PA16 LINE L1 3523 4471 -3133 913 100 0 0 chrX 81733640 81733770 -95240370 + L1PB1 LINE L1 6016 6145 -6 11316 235 32 33 chrX 81733770 81736870 -95237270 + L1PA16 LINE L1 4471 7596 -8 517 231 86 110 chrX 81737103 81737475 -95236665 + LTR24B LTR ERV1 207 569 -7 535 277 48 12 chrX 81738335 81738501 -95235639 - MIR SINE MIR 0 262 91 674 310 41 20 chrX 81739139 81739384 -95234756 - MIR SINE MIR -10 252 3 1927 158 134 11 chrX 81741188 81741569 -95232571 - MSTA LTR MaLR 0 428 1 1799 83 4 19 chrX 81741575 81741839 -95232301 - MSTA-int LTR MaLR -6 1574 1315 1817 175 116 13 chrX 81741866 81742254 -95231886 - MSTA LTR MaLR 0 428 1 658 263 43 11 chrX 81742566 81742752 -95231388 - L1ME3A LINE L1 0 6170 5979 260 295 22 58 chrX 81742764 81742903 -95231237 - L1ME3A LINE L1 -70 6100 5967 1945 256 49 45 chrX 81742996 81743891 -95230249 - L1MC5 LINE L1 -431 7530 6632 2097 190 26 14 chrX 81744189 81744605 -95229535 + MSTA LTR MaLR 1 421 -7 3021 161 45 23 chrX 81744609 81745182 -95228958 - LTR49 LTR ERV1 -7 588 3 9808 171 46 34 chrX 81745189 81747932 -95226208 - LTR49-int LTR ERV1 -4 6327 3620 260 53 0 0 chrX 81747932 81747970 -95226170 + L1PB3 LINE L1 6083 6120 -34 384 40 0 0 chrX 81747970 81748020 -95226120 + (CA)n Simple_repeat Simple_repeat 1 50 0 9808 171 46 34 chrX 81748020 81748287 -95225853 - LTR49-int LTR ERV1 -2710 3621 3259 17015 198 52 10 chrX 81748303 81751759 -95222381 + L1PB3 LINE L1 12 3611 -3954 326 155 0 0 chrX 81751759 81751817 -95222323 - MSTA LTR MaLR 0 428 371 1405 200 12 25 chrX 81751846 81752201 -95221939 - MSTA-int LTR MaLR -14 1637 631 * 1629 158 20 10 chrX 81752194 81752486 -95221654 - MSTA-int LTR MaLR -1282 298 4 1925 150 137 8 chrX 81752489 81752868 -95221272 - MSTA LTR MaLR 0 428 1 12800 200 43 12 chrX 81752869 81753510 -95220630 + L1PB3 LINE L1 3608 4227 -3357 2525 127 3 0 chrX 81753510 81753873 -95220267 + THE1B LTR MaLR 1 364 0 12800 200 43 12 chrX 81753873 81756365 -95217775 + L1PB3 LINE L1 4227 6841 -743 997 172 47 23 chrX 81756370 81756677 -95217463 - LTR49-int LTR ERV1 -5980 351 1 2579 168 53 74 chrX 81756684 81756884 -95217256 - LTR29 LTR ERV1 -5 648 445 2223 124 3 14 chrX 81756884 81757231 -95216909 + L1PB3 LINE L1 7230 7572 -1 2579 168 53 74 chrX 81757231 81757244 -95216896 - LTR29 LTR ERV1 -208 445 433 1608 173 3 14 chrX 81757244 81757605 -95216535 + AluSx SINE Alu 3 360 0 2579 168 53 74 chrX 81757605 81758028 -95216112 - LTR29 LTR ERV1 -220 433 1 2065 179 59 2 chrX 81758038 81758462 -95215678 - LTR49 LTR ERV1 -147 448 1 236 167 0 24 chrX 81758741 81758783 -95215357 + MSTA LTR MaLR 388 428 0 876 243 64 74 chrX 81759416 81759712 -95214428 - L2 LINE L2 -2 3311 3019 708 215 31 0 chrX 81759868 81760031 -95214109 - MER5B DNA MER1_type 0 178 11 2181 102 28 0 chrX 81761002 81761287 -95212853 - AluSq SINE Alu -20 293 1 1970 135 14 0 chrX 81761440 81761736 -95212404 - AluSq SINE Alu -13 300 1 238 330 78 43 chrX 81762149 81762264 -95211876 - MIR3 SINE MIR -44 164 46 250 67 4 0 chrX 81762268 81762310 -95211830 - L1M1 LINE L1 -490 5801 5767 13457 182 22 12 chrX 81762588 81767086 -95207054 - L1MA2 LINE L1 0 7723 3177 5261 29 0 0 chrX 81767086 81767701 -95206439 + L1PA4 LINE L1 5540 6154 -1 277 193 0 18 chrX 81767709 81767766 -95206374 - MLT1G1 LTR MaLR -533 62 7 409 240 193 7 chrX 81767818 81767968 -95206172 + MER2 DNA MER2_type 168 345 0 7054 174 33 15 chrX 81768046 81769483 -95204657 - L1MA2 LINE L1 -4376 3189 1728 5508 124 6 1 chrX 81769529 81770381 -95203759 - L1PA13 LINE L1 -1 6162 5307 2804 248 17 7 chrX 81770374 81771983 -95202157 - L1MA2 LINE L1 -5835 1730 1 * 222 37 0 0 chrX 81772163 81772190 -95201950 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chrX 81772408 81772430 -95201710 + AT_rich Low_complexity Low_complexity 1 22 0 2361 260 35 14 chrX 81772849 81773756 -95200384 - L1PA15-16 LINE L1 -3597 3252 2334 1362 206 31 9 chrX 81773940 81774265 -95199875 - L1PA15-16 LINE L1 -4523 2326 1995 24148 32 0 0 chrX 81774294 81777986 -95196154 - L1PA4 LINE L1 -3 6152 2460 7477 102 40 8 chrX 81778086 81779202 -95194938 - HERVH LTR ERV1 -6561 1152 1 2652 88 98 5 chrX 81779204 81779614 -95194526 - LTR7 LTR ERV1 -2 448 1 2756 216 29 21 chrX 81779614 81780340 -95193800 - L1 LINE L1 -1369 4777 4046 * 4598 269 35 73 chrX 81780336 81784361 -95189779 - L1PA12 LINE L1 -3180 4404 9 180 0 0 0 chrX 81784785 81784805 -95189335 + (TAA)n Simple_repeat Simple_repeat 1 20 0 695 331 29 16 chrX 81784805 81785050 -95189090 - MIR SINE MIR -12 250 3 236 297 75 51 chrX 81786886 81787055 -95187085 + MIR SINE MIR 19 192 -66 213 39 0 0 chrX 81787496 81787522 -95186618 + (T)n Simple_repeat Simple_repeat 1 26 0 2460 171 54 51 chrX 81787635 81788244 -95185896 - LTR36 LTR ERV1 0 611 1 778 253 6 0 chrX 81788912 81789094 -95185046 - MER3 DNA MER1_type -26 183 1 207 0 0 0 chrX 81789240 81789263 -95184877 + (TG)n Simple_repeat Simple_repeat 2 24 0 573 344 103 48 chrX 81789293 81789958 -95184182 - L2 LINE L2 0 3313 2584 2487 69 0 0 chrX 81789958 81790264 -95183876 + AluY SINE Alu 1 306 -5 573 344 103 48 chrX 81790264 81790467 -95183673 - L2 LINE L2 -729 2584 2394 2152 157 46 3 chrX 81790506 81790894 -95183246 - Tigger1 DNA MER2_type -63 2355 1951 1482 208 12 0 chrX 81790905 81791160 -95182980 + L1PA13 LINE L1 2 259 -6528 6504 226 30 5 chrX 81791275 81793752 -95180388 + L1PA13 LINE L1 1174 3727 -3070 1976 189 60 36 chrX 81793770 81794219 -95179921 + LTR2B LTR ERV1 31 490 0 8501 197 14 15 chrX 81794219 81794605 -95179535 + L1PA13 LINE L1 3724 4109 -2688 1916 140 88 20 chrX 81794605 81794956 -95179184 + THE1C LTR MaLR 1 375 0 9300 123 40 43 chrX 81794956 81796540 -95177600 + THE1C-int LTR MaLR 1 1580 0 1917 144 61 19 chrX 81796540 81796900 -95177240 + THE1C LTR MaLR 1 375 0 8501 197 14 15 chrX 81796900 81797553 -95176587 + L1PA13 LINE L1 4107 4759 -2038 1940 190 51 10 chrX 81797553 81797964 -95176176 - MSTA LTR MaLR 0 428 1 8501 197 14 15 chrX 81797964 81798581 -95175559 + L1PA13 LINE L1 4759 5375 -1422 1943 203 124 70 chrX 81798581 81799365 -95174775 - LTR1B LTR ERV1 0 826 1 8501 197 14 15 chrX 81799365 81800026 -95174114 + L1PA13 LINE L1 5375 6035 -762 11218 164 13 9 chrX 81800059 81802014 -95172126 - Tigger1 DNA MER2_type -454 1964 1 199 279 59 0 chrX 81802046 81802114 -95172026 - L2 LINE L2 -955 2359 2288 1816 182 5 32 chrX 81802640 81803013 -95171127 - MLT1A1 LTR MaLR 0 365 3 2338 207 29 53 chrX 81803932 81804027 -95170113 - L1MB7 LINE L1 -8 6176 6080 568 76 13 0 chrX 81804027 81804106 -95170034 + MADE1 DNA Mariner 1 80 0 2338 207 29 53 chrX 81804106 81804634 -95169506 - L1MB7 LINE L1 -104 6080 5568 718 252 108 25 chrX 81804632 81804946 -95169194 + L1M4c LINE L1 1406 1745 -4639 * 2107 162 19 19 chrX 81804948 81805312 -95168828 - THE1B LTR MaLR 0 364 1 10745 98 52 1 chrX 81805312 81806815 -95167325 - THE1B-int LTR MaLR 0 1580 1 2170 156 14 19 chrX 81806815 81807181 -95166959 - THE1B LTR MaLR 0 364 1 291 250 22 0 chrX 81807186 81807278 -95166862 + L1M4c LINE L1 1748 1841 -4543 832 191 6 6 chrX 81807452 81807614 -95166526 - AluJb SINE Alu -150 162 1 4625 167 15 6 chrX 81807648 81808942 -95165198 - L1PA16 LINE L1 -1 6165 4870 239 217 0 0 chrX 81808959 81809035 -95165105 - L1M4c LINE L1 -3939 2445 2370 * 934 278 63 4 chrX 81809029 81809519 -95164621 + L1M4c LINE L1 3179 3697 -2685 21 36 0 0 chrX 81809562 81809590 -95164550 + AT_rich Low_complexity Low_complexity 1 28 0 433 225 75 43 chrX 81809596 81809826 -95164314 + L1M4c LINE L1 3989 4221 -2161 183 129 0 0 chrX 81809867 81809898 -95164242 + (TA)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chrX 81809949 81809975 -95164165 + (GA)n Simple_repeat Simple_repeat 2 27 0 373 252 0 36 chrX 81809988 81810099 -95164041 + L1M4c LINE L1 4255 4361 -2021 18498 69 3 16 chrX 81810199 81812802 -95161338 - L1P LINE L1 -3524 2622 55 507 240 37 89 chrX 81812803 81813011 -95161129 - L1PA15-16 LINE L1 -4839 1364 1172 2134 113 16 26 chrX 81813011 81813320 -95160820 + AluSp SINE Alu 1 306 -7 507 240 37 89 chrX 81813320 81813382 -95160758 - L1PA15-16 LINE L1 -5031 1172 1108 328 216 67 52 chrX 81813518 81813652 -95160488 - L1PA15-16 LINE L1 -5243 961 826 316 232 36 27 chrX 81814662 81814774 -95159366 + L2 LINE L2 2684 2796 -518 2248 117 0 0 chrX 81815364 81815662 -95158478 - AluSq SINE Alu -15 298 1 23 33 0 0 chrX 81815889 81815919 -95158221 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chrX 81816577 81816600 -95157540 + (T)n Simple_repeat Simple_repeat 1 23 0 9143 197 82 42 chrX 81817108 81818882 -95155258 + L1MC1 LINE L1 27 1943 -4483 1843 237 21 7 chrX 81818882 81819300 -95154840 + MSTB LTR MaLR 3 426 0 9143 197 82 42 chrX 81819300 81820108 -95154032 + L1MC1 LINE L1 1943 2717 -3709 5391 227 15 19 chrX 81820117 81821522 -95152618 + L1MC1 LINE L1 4143 5551 -1062 4730 49 5 2 chrX 81821522 81822111 -95152029 + LTR10C LTR ERV1 1 591 0 5391 227 15 19 chrX 81822111 81823165 -95150975 + L1MC1 LINE L1 5551 6607 -6 375 335 60 0 chrX 81823925 81824107 -95150033 - LTR67 LTR ERVL -2 555 363 2196 274 98 29 chrX 81824175 81825012 -95149128 + L1M4b LINE L1 -244 650 -5896 1599 112 0 0 chrX 81825032 81825265 -95148875 - L1PA13 LINE L1 -16 6147 5915 715 152 32 0 chrX 81825265 81825390 -95148750 + MSTA-int LTR MaLR 1523 1651 0 1855 149 23 3 chrX 81825392 81825693 -95148447 + MSTA LTR MaLR 3 309 -119 5701 217 19 11 chrX 81825693 81826845 -95147295 - MSTA-int LTR MaLR -490 1161 1 2526 160 24 2 chrX 81826845 81827264 -95146876 - MSTA LTR MaLR 0 428 1 316 179 183 17 chrX 81827274 81827429 -95146711 + L1M4b LINE L1 1250 1435 -5107 593 29 0 0 chrX 81827458 81827528 -95146612 - L1P1 LINE L1 -385 5770 5701 1222 35 0 0 chrX 81827528 81827672 -95146468 + L1PA3 LINE L1 6009 6152 -3 1017 308 49 13 chrX 81827682 81828309 -95145831 + L1M4b LINE L1 1446 2095 -4551 1147 229 37 160 chrX 81828538 81829788 -95144352 + L1M4b LINE L1 3250 4345 -2299 1259 220 65 7 chrX 81830021 81830298 -95143842 + AluJo SINE Alu 1 293 -9 2916 253 46 6 chrX 81830872 81832324 -95141816 + L1M2 LINE L1 2077 3590 -3258 1988 135 33 3 chrX 81832327 81832631 -95141509 + MER41C LTR ERV1 1 313 -241 340 255 0 43 chrX 81832649 81832743 -95141397 + L1MC4 LINE L1 6614 6703 -1339 356 235 47 0 chrX 81832749 81832834 -95141306 - L1MC4 LINE L1 -1339 6703 6615 310 287 0 11 chrX 81832835 81832922 -95141218 - L1MC4 LINE L1 -1341 6701 6616 309 308 0 11 chrX 81832843 81832934 -95141206 + L1MC4 LINE L1 6614 6703 -1339 * 243 279 47 0 chrX 81832940 81833026 -95141114 - L1MC4 LINE L1 -1339 6703 6614 1161 182 29 0 chrX 81833035 81833046 -95141094 + MER41C LTR ERV1 340 349 -205 288 77 0 0 chrX 81833046 81833085 -95141055 + (CA)n Simple_repeat Simple_repeat 2 40 0 1161 182 29 0 chrX 81833085 81833282 -95140858 + MER41C LTR ERV1 349 554 0 3186 193 40 21 chrX 81833284 81834091 -95140049 + L1M2 LINE L1 3592 4417 -2431 2100 108 20 0 chrX 81834091 81834386 -95139754 + AluSg SINE Alu 1 301 -9 3186 193 40 21 chrX 81834386 81834427 -95139713 + L1M2 LINE L1 4417 4456 -2392 1654 101 0 16 chrX 81834442 81834689 -95139451 + L1MA1 LINE L1 6060 6302 0 26 30 0 0 chrX 81834689 81834722 -95139418 + AT_rich Low_complexity Low_complexity 1 33 0 441 356 14 0 chrX 81834850 81834996 -95139144 + LTR16B LTR ERVL 4 151 -313 301 337 0 0 chrX 81835029 81835121 -95139019 + LTR16B LTR ERVL 233 324 -140 504 211 57 86 chrX 81835493 81835668 -95138472 + MER58C DNA MER1_type 44 213 -2 279 152 0 0 chrX 81835741 81835787 -95138353 + MER4A LTR ERV1 46 91 -573 1635 143 168 76 chrX 81835794 81836164 -95137976 + MER4A LTR ERV1 261 664 0 25 51 0 0 chrX 81836929 81836968 -95137172 + AT_rich Low_complexity Low_complexity 1 39 0 560 257 47 18 chrX 81837599 81837770 -95136370 - MER69A DNA AcHobo 0 177 2 265 315 22 11 chrX 81837777 81837869 -95136271 + MER20B DNA MER1_type 60 152 -631 3360 171 65 24 chrX 81838060 81838734 -95135406 - L1PA16 LINE L1 -1 6165 5464 * 10510 58 10 5 chrX 81838730 81840086 -95134054 - L1P LINE L1 -4110 2036 675 25751 31 3 19 chrX 81840086 81843987 -95130153 + L1PA3 LINE L1 2268 6155 0 2067 216 60 14 chrX 81844013 81844689 -95129451 - L1PA16 LINE L1 -691 5475 4774 2624 86 100 5 chrX 81844692 81845101 -95129039 - LTR7 LTR ERV1 -2 448 1 2334 101 53 13 chrX 81845101 81845478 -95128662 - HERVH LTR ERV1 0 7713 7322 1318 113 25 5 chrX 81845476 81845680 -95128460 - HERVH LTR ERV1 -1894 5819 5612 * 4337 143 0 3 chrX 81845695 81846359 -95127781 - HERVH LTR ERV1 -2564 5149 4488 3463 102 4 6 chrX 81846361 81846863 -95127277 - HERVH LTR ERV1 -3720 3993 3493 808 157 27 0 chrX 81846854 81847001 -95127139 - HERVH LTR ERV1 -4423 3290 3140 * 2471 157 5 11 chrX 81846995 81847434 -95126706 - HERVH LTR ERV1 -4726 2987 2552 609 132 0 0 chrX 82047439 82047530 -94926610 - MER4A LTR ERV1 -269 395 305 2085 195 76 11 chrX 82047535 82048007 -94926133 - LTR22 LTR ERVK -4 505 3 10557 90 5 29 chrX 82048009 82049481 -94924659 - HERVK22 LTR ERVK 0 6837 5401 2394 86 3 0 chrX 82049566 82049868 -94924272 + AluSp SINE Alu 1 303 -10 1977 67 0 20 chrX 82049869 82050123 -94924017 + AluY SINE Alu 1 249 -62 20164 100 4 0 chrX 82050123 82052867 -94921273 - HERVK22 LTR ERVK -1460 5377 2623 671 212 0 0 chrX 82052870 82052988 -94921152 - HERVK22 LTR ERVK -4391 2446 2329 4694 140 1 1 chrX 82053349 82054042 -94920098 - HERVK22 LTR ERVK -6142 695 3 1115 203 27 31 chrX 82054046 82054302 -94919838 - LTR22 LTR ERVK -3 506 252 7481 59 0 24 chrX 82054331 82055335 -94918805 + L1P LINE L1 3821 4800 -1346 1362 61 0 17 chrX 82055335 82055515 -94918625 + L1PA5 LINE L1 5973 6150 -4 627 130 174 21 chrX 82055515 82055651 -94918489 - LTR22 LTR ERVK -373 136 1 333 73 18 55 chrX 82055651 82055704 -94918436 - MER4A LTR ERV1 -353 311 261 677 111 0 10 chrX 82055704 82055803 -94918337 - MER4A LTR ERV1 -566 98 1 13090 149 54 27 chrX 82055804 82058494 -94915646 - MER4A-int LTR ERV1 0 6598 3837 2128 171 78 69 chrX 82058488 82059495 -94914645 - MER4A-int LTR ERV1 -2912 3686 1611 * 2850 136 21 19 chrX 82059495 82060087 -94914053 + MER4E LTR ERV1 1 766 0 2492 154 136 16 chrX 82060087 82060356 -94913784 - MER4A-int LTR ERV1 -4143 2455 2220 1798 167 0 14 chrX 82060356 82060650 -94913490 - AluSx SINE Alu -22 290 1 2492 154 136 16 chrX 82060650 82060952 -94913188 - MER4A-int LTR ERV1 -4378 2220 1815 394 206 33 0 chrX 82060957 82061049 -94913091 + L1P3 LINE L1 3 97 -5778 * 21679 131 13 19 chrX 82061032 82064809 -94909331 + L1ME LINE L1 1784 5532 -638 3474 162 131 32 chrX 82064824 82065674 -94908466 - MER4A-int LTR ERV1 -5662 936 3 2657 125 5 12 chrX 82065678 82066085 -94908055 - MER4A LTR ERV1 0 664 261 658 101 0 10 chrX 82066085 82066184 -94907956 - MER4A LTR ERV1 -566 98 1 12580 102 21 1 chrX 82066714 82068434 -94905706 - HERVL LTR ERVL -412 5242 3488 229 216 54 54 chrX 82069136 82069210 -94904930 - Zaphod DNA AcHobo -12 4019 3946 25 31 0 0 chrX 82069865 82069897 -94904243 + AT_rich Low_complexity Low_complexity 1 32 0 413 265 52 97 chrX 82070911 82071220 -94902920 - L1MEc LINE L1 -2824 3391 3097 572 198 16 0 chrX 82071228 82071354 -94902786 - L1MA8 LINE L1 -25 6266 6139 1963 177 8 13 chrX 82071358 82071731 -94902409 - THE1C LTR MaLR -4 371 1 9611 134 43 7 chrX 82071731 82073255 -94900885 - THE1C-int LTR MaLR 0 1580 1 2131 138 32 22 chrX 82073255 82073626 -94900514 - THE1C LTR MaLR 0 375 1 1857 147 83 37 chrX 82073631 82073979 -94900161 - THE1B LTR MaLR 0 364 1 10893 111 13 18 chrX 82073984 82075567 -94898573 - THE1B-int LTR MaLR -6 1574 1 1865 161 98 15 chrX 82075567 82075903 -94898237 - THE1B LTR MaLR 0 364 1 1799 252 66 32 chrX 82075912 82076887 -94897253 - L1MEc LINE L1 -3124 3091 2135 1080 266 46 84 chrX 82076960 82077482 -94896658 + MER68 LTR ERV1 46 547 -15 466 246 24 24 chrX 82077491 82077658 -94896482 - L1MEc LINE L1 -4265 2131 1965 6666 168 14 18 chrX 82078473 82080757 -94893383 - L1PA14 LINE L1 0 6333 4100 298 340 30 10 chrX 82082155 82082255 -94891885 + L2 LINE L2 3154 3255 -17 1880 218 55 84 chrX 82082373 82082896 -94891244 - LTR53 LTR ERVL -2 517 10 23 33 0 0 chrX 82083403 82083433 -94890707 + AT_rich Low_complexity Low_complexity 1 30 0 2112 93 0 27 chrX 82083552 82083853 -94890287 + AluSc SINE Alu 1 293 -16 27 0 0 0 chrX 82083853 82083880 -94890260 + AT_rich Low_complexity Low_complexity 1 27 0 2084 113 14 0 chrX 82084137 82084430 -94889710 - AluSx SINE Alu -15 297 1 23 33 0 0 chrX 82084825 82084855 -94889285 + AT_rich Low_complexity Low_complexity 1 30 0 1012 172 17 4 chrX 82084879 82085117 -94889023 + L1MA8 LINE L1 6050 6290 -1 345 304 43 0 chrX 82086712 82086827 -94887313 - Charlie8 DNA MER1_type -2184 233 114 294 173 86 12 chrX 82086943 82087024 -94887116 + MLT1J LTR MaLR 422 508 -3 260 275 0 0 chrX 82087027 82087096 -94887044 - L1ME LINE L1 -530 5591 5523 672 259 24 6 chrX 82087816 82087982 -94886158 + MIR SINE MIR 18 186 -76 219 167 56 37 chrX 82087982 82088036 -94886104 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 4957 147 14 43 chrX 82088076 82089004 -94885136 + MER4D LTR ERV1 1 901 -2 23 0 0 0 chrX 82089021 82089044 -94885096 + AT_rich Low_complexity Low_complexity 1 23 0 3477 146 12 8 chrX 82089648 82090239 -94883901 + LTR49 LTR ERV1 3 595 0 29 0 0 0 chrX 82090568 82090597 -94883543 + AT_rich Low_complexity Low_complexity 1 29 0 3314 121 42 73 chrX 82090784 82091403 -94882737 - MER4A LTR ERV1 0 600 1 3100 160 35 30 chrX 82091405 82092012 -94882128 + MER4B LTR ERV1 1 610 0 702 249 12 23 chrX 82092119 82092292 -94881848 - MIR SINE MIR -33 229 59 203 152 0 0 chrX 82092951 82092984 -94881156 + T-rich Low_complexity Low_complexity 4 36 0 21 71 0 0 chrX 82093202 82093244 -94880896 + AT_rich Low_complexity Low_complexity 1 42 0 183 132 40 40 chrX 82093287 82093363 -94880777 + (TA)n Simple_repeat Simple_repeat 1 76 0 206 157 0 96 chrX 82093490 82093573 -94880567 + T-rich Low_complexity Low_complexity 1 75 0 25 31 0 0 chrX 82093884 82093916 -94880224 + AT_rich Low_complexity Low_complexity 1 32 0 433 327 32 48 chrX 82094342 82094593 -94879547 - MLT1I LTR MaLR -2 407 161 4188 118 12 20 chrX 82094737 82095396 -94878744 + MER4D LTR ERV1 1 654 -218 1410 128 44 0 chrX 82095834 82096060 -94878080 - L1MA3 LINE L1 -477 5828 5593 1245 150 9 0 chrX 82096080 82096293 -94877847 - L1PB1 LINE L1 -3 6148 5934 827 169 37 16 chrX 82096310 82096499 -94877641 + L1MB3 LINE L1 5983 6175 -8 1635 273 21 62 chrX 82096898 82097474 -94876666 - MLT2B3 LTR ERVL -2 552 1 7045 197 63 12 chrX 82097474 82098924 -94875216 - ERVL LTR ERVL -7 5757 4234 1112 182 18 52 chrX 82098920 82099149 -94874991 - ERVL LTR ERVL -1552 4138 3921 * 7629 188 34 5 chrX 82099169 82100569 -94873571 - ERVL LTR ERVL -2196 3568 2129 936 270 8 38 chrX 82100598 82100865 -94873275 - MLT2B1 LTR ERVL -253 267 9 266 236 0 0 chrX 82101090 82101145 -94872995 - L3 LINE CR1 -18 1559 1505 183 375 42 0 chrX 82102249 82102345 -94871795 + L2 LINE L2 3210 3309 -4 30 0 0 0 chrX 82102614 82102644 -94871496 + AT_rich Low_complexity Low_complexity 1 30 0 615 190 7 15 chrX 82102966 82103103 -94871037 - L1MB8 LINE L1 -3 6175 6040 3171 150 64 35 chrX 82103105 82103700 -94870440 + LTR9 LTR ERV1 1 612 0 2738 166 18 4 chrX 82103702 82104160 -94869980 + HUERS-P3 LTR ERV1 3 466 -8453 * 8158 130 12 4 chrX 82104154 82105372 -94868768 + LTR9-int LTR ERV1 5718 6945 -473 751 189 11 11 chrX 82105380 82105565 -94868575 + LTR9-int LTR ERV1 2388 2572 -2443 418 222 18 0 chrX 82105558 82105677 -94868463 + LTR9-int LTR ERV1 2446 4309 -571 * 1295 134 26 5 chrX 82105832 82106026 -94868114 + LTR9-int LTR ERV1 8721 8918 -1 2969 150 89 46 chrX 82106026 82106273 -94867867 + LTR9 LTR ERV1 1 236 -376 5965 13 3 0 chrX 82106273 82106957 -94867183 + L1PA3 LINE L1 5469 6154 -1 2969 150 89 46 chrX 82106957 82107296 -94866844 + LTR9 LTR ERV1 236 612 0 1569 216 18 36 chrX 82107296 82107490 -94866650 - L1MB7 LINE L1 -162 6022 5837 2302 75 3 25 chrX 82107490 82107808 -94866332 - AluY SINE Alu 0 311 1 1569 216 18 36 chrX 82107808 82108001 -94866139 - L1MB7 LINE L1 -347 5837 5642 27 29 0 0 chrX 82108007 82108041 -94866099 + AT_rich Low_complexity Low_complexity 1 34 0 269 220 17 0 chrX 82108276 82108335 -94865805 - L2 LINE L2 -3 3310 3251 1454 197 15 0 chrX 82108914 82109188 -94864952 - AluJo SINE Alu -18 294 17 4917 164 22 12 chrX 82109869 82110763 -94863377 + MER4D LTR ERV1 1 903 0 2120 108 0 23 chrX 82112126 82112431 -94861709 + AluY SINE Alu 1 298 -13 22 70 0 0 chrX 82112625 82112668 -94861472 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chrX 82112778 82112802 -94861338 + AT_rich Low_complexity Low_complexity 1 24 0 725 169 47 14 chrX 82112828 82112976 -94861164 - L1MA6 LINE L1 -200 6100 5948 1152 126 30 0 chrX 82112976 82113174 -94860966 + L1MA6 LINE L1 6097 6300 0 561 361 5 0 chrX 82114424 82114615 -94859525 - MIR SINE MIR -8 254 63 1356 127 238 0 chrX 82114964 82115208 -94858932 + AluSq SINE Alu 2 303 0 1175 183 56 3 chrX 82116285 82116569 -94857571 + L1MA7 LINE L1 5992 6290 -1 404 301 36 16 chrX 82117848 82118041 -94856099 + MER117 DNA MER1_type 1 197 0 586 110 25 43 chrX 82118526 82118689 -94855451 + (TA)n Simple_repeat Simple_repeat 2 161 0 738 264 25 21 chrX 82118689 82118931 -94855209 + L1MC4 LINE L1 6844 7086 -956 1882 258 57 16 chrX 82118951 82119568 -94854572 + L1MC4 LINE L1 7260 7901 -141 864 222 61 22 chrX 82120108 82120419 -94853721 + L1 LINE L1 4163 4485 -1661 2266 106 3 0 chrX 82120470 82120782 -94853358 + AluSp SINE Alu 1 313 0 11691 185 58 10 chrX 82121053 82122809 -94851331 + L1M1 LINE L1 1274 2943 -4622 276 36 36 36 chrX 82122809 82122864 -94851276 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 11691 185 58 10 chrX 82122864 82125313 -94848827 + L1M1 LINE L1 2943 5705 -1860 2273 88 0 10 chrX 82125313 82125619 -94848521 + AluY SINE Alu 4 306 -5 11691 185 58 10 chrX 82125619 82125783 -94848357 + L1M1 LINE L1 5705 5860 -1705 4897 253 54 13 chrX 82125799 82128160 -94845980 + L1MB3 LINE L1 2125 5102 -1280 2581 186 30 29 chrX 82128166 82128757 -94845383 + L1MB3 LINE L1 5826 6417 -2 201 74 0 0 chrX 82128786 82128813 -94845327 + (TATG)n Simple_repeat Simple_repeat 2 28 0 30 45 0 0 chrX 82129460 82129504 -94844636 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chrX 82129570 82129598 -94844542 + AT_rich Low_complexity Low_complexity 1 28 0 2562 204 49 4 chrX 82129842 82130351 -94843789 + ERVL LTR ERVL 1802 2333 -3431 1545 231 26 0 chrX 82130348 82130656 -94843484 + ERVL LTR ERVL 3023 3338 -2426 * 1751 162 34 0 chrX 82130681 82130978 -94843162 + AluJb SINE Alu 5 311 -1 274 77 90 39 chrX 82130981 82131059 -94843081 + GA-rich Low_complexity Low_complexity 2 83 0 2490 200 11 33 chrX 82131059 82131171 -94842969 + ERVL LTR ERVL 3333 3446 -2318 2311 87 13 7 chrX 82131171 82131481 -94842659 + AluSx SINE Alu 1 312 0 2490 200 11 33 chrX 82131481 82132076 -94842064 + ERVL LTR ERVL 3446 4074 -1690 2402 69 0 0 chrX 82133411 82133716 -94840424 + AluY SINE Alu 1 305 -6 2770 159 26 0 chrX 82133896 82134354 -94839786 + Tigger3b DNA MER2_type 1 470 -761 5304 74 34 5 chrX 82134354 82135098 -94839042 - MER4E LTR ERV1 -1 765 1 2448 283 55 19 chrX 82135243 82136127 -94838013 - L1MEc LINE L1 -5459 937 22 213 121 0 0 chrX 82136319 82136352 -94837788 + (A)n Simple_repeat Simple_repeat 1 33 0 26 93 0 0 chrX 82137202 82137277 -94836863 + AT_rich Low_complexity Low_complexity 1 75 0 321 293 110 21 chrX 82137404 82137595 -94836545 - L1MEd LINE L1 -5391 728 521 234 62 0 0 chrX 82138752 82138784 -94835356 + (CAA)n Simple_repeat Simple_repeat 2 33 0 305 260 39 39 chrX 82138934 82139038 -94835102 + MER41E LTR ERV1 347 450 -62 2517 108 17 8 chrX 82139414 82139775 -94834365 - THE1B LTR MaLR 0 364 1 275 352 48 0 chrX 82139920 82140045 -94834095 + L2 LINE L2 2586 2716 -598 1723 180 106 11 chrX 82140465 82140842 -94833298 - LOR1b LTR ERV1 0 461 49 1251 181 31 12 chrX 82140852 82141106 -94833034 + AluJo SINE Alu 21 279 -33 183 259 35 82 chrX 82141245 82141330 -94832810 + MIR3 SINE MIR 82 162 -46 300 271 121 29 chrX 82141364 82141571 -94832569 + L1MCa LINE L1 1327 1552 -4874 21 36 0 0 chrX 82142162 82142190 -94831950 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 82143456 82143478 -94830662 + AT_rich Low_complexity Low_complexity 1 22 0 9962 196 47 59 chrX 82143739 82146791 -94827349 + L1MA2 LINE L1 14 3300 -4265 306 67 0 0 chrX 82146791 82146836 -94827304 + (TG)n Simple_repeat Simple_repeat 2 46 0 9962 196 47 59 chrX 82146836 82148248 -94825892 + L1MA2 LINE L1 3300 4728 -2837 1369 205 4 4 chrX 82148249 82148512 -94825628 + AluJb SINE Alu 49 311 -1 294 29 0 0 chrX 82148517 82148552 -94825588 + (GGAA)n Simple_repeat Simple_repeat 2 36 0 8062 176 18 58 chrX 82148552 82148599 -94825541 + L1MA2 LINE L1 4714 4761 -2962 2576 71 0 0 chrX 82148599 82148907 -94825233 + AluSg SINE Alu 3 310 0 8062 176 18 58 chrX 82148907 82150915 -94823225 + L1MA2 LINE L1 4761 6628 -1095 1846 204 59 5 chrX 82150915 82151321 -94822819 - MSTA LTR MaLR 0 428 1 8062 176 18 58 chrX 82151321 82152372 -94821768 + L1MA2 LINE L1 6628 7719 -4 540 179 0 0 chrX 82152445 82152540 -94821600 + L1 LINE L1 4857 4951 -1195 1660 251 63 23 chrX 82152548 82153170 -94820970 + L1ME1 LINE L1 5538 6116 -50 802 171 0 0 chrX 82153170 82153293 -94820847 + FLAM_C SINE Alu 1 123 -20 667 235 39 0 chrX 82153351 82153530 -94820610 + L1MA8 LINE L1 6070 6255 -36 429 36 0 0 chrX 82153600 82153655 -94820485 + (TG)n Simple_repeat Simple_repeat 2 56 0 700 215 0 0 chrX 82153665 82153800 -94820340 - AluJb SINE Alu -44 268 134 2284 164 78 25 chrX 82153803 82154218 -94819922 - L1MA6 LINE L1 -247 6053 5607 2246 123 0 0 chrX 82154218 82154527 -94819613 + AluSq SINE Alu 1 309 -4 2284 164 78 25 chrX 82154527 82154598 -94819542 - L1MA6 LINE L1 -693 5607 5541 4307 174 66 9 chrX 82154609 82155477 -94818663 + L1 LINE L1 3997 4919 -1227 5996 78 42 1 chrX 82155477 82156271 -94817869 + LTR12 LTR ERV1 1 826 0 4307 174 66 9 chrX 82156271 82156300 -94817840 + L1 LINE L1 4919 4945 -1201 463 169 11 0 chrX 82156310 82156399 -94817741 - L1MA6 LINE L1 -1117 5029 4940 279 234 10 67 chrX 82156403 82156554 -94817586 - L1ME1 LINE L1 -5 6161 6039 2310 133 43 3 chrX 82156587 82156962 -94817178 + LTR49 LTR ERV1 1 390 -205 443 240 79 97 chrX 82157000 82157279 -94816861 - TAR1 Satellite telomeric -1832 279 6 * 2597 200 24 26 chrX 82157080 82157655 -94816485 - LTR60 LTR ERV1 -6 580 7 797 208 94 10 chrX 82157658 82157850 -94816290 + LTR49 LTR ERV1 388 595 0 1098 233 84 21 chrX 82157851 82158233 -94815907 - L1ME1 LINE L1 -165 6796 6416 4683 170 18 18 chrX 82158447 82159410 -94814730 + L1 LINE L1 3958 4920 -1226 1609 266 75 25 chrX 82159416 82160174 -94813966 - L1ME1 LINE L1 -1152 5789 4925 345 82 0 0 chrX 82160174 82160223 -94813917 + (TATG)n Simple_repeat Simple_repeat 2 50 0 1609 266 75 25 chrX 82160223 82160529 -94813611 - L1ME1 LINE L1 -2016 4925 4636 * 3264 225 79 16 chrX 82160526 82161802 -94812338 - L1MB8 LINE L1 0 6676 5321 610 251 116 35 chrX 82161899 82162218 -94811922 - L1MB8 LINE L1 -4457 2189 1845 4416 242 56 56 chrX 82162238 82162706 -94811434 - L1MB8 LINE L1 -4841 1701 1234 2304 101 3 0 chrX 82162706 82163012 -94811128 - AluSc SINE Alu -2 307 1 4416 242 56 56 chrX 82163012 82164212 -94809928 - L1MB8 LINE L1 -5307 1235 33 633 282 51 15 chrX 82164241 82164514 -94809626 - L1ME1 LINE L1 -2294 4647 4365 693 168 30 0 chrX 82164544 82164675 -94809465 + MER73 LTR ERVL 510 644 0 913 266 5 5 chrX 82164748 82164966 -94809174 - MER58A DNA MER1_type -6 218 1 789 261 43 28 chrX 82164967 82165362 -94808778 - L1ME1 LINE L1 -4122 3000 2600 311 307 40 30 chrX 82165379 82165581 -94808559 - L1ME1 LINE L1 -5036 1905 1702 1790 164 57 37 chrX 82165603 82166142 -94807998 + MLT2A1 LTR ERVL 1 554 0 305 262 30 73 chrX 82166149 82166385 -94807755 - L1ME1 LINE L1 -4896 1527 1436 970 191 37 131 chrX 82166429 82166812 -94807328 + MLT1A1 LTR MaLR 19 365 0 1125 262 97 78 chrX 82166813 82167158 -94806982 - L1ME1 LINE L1 -4968 1455 1118 2581 116 3 0 chrX 82167158 82167521 -94806619 + THE1B LTR MaLR 1 364 0 1125 262 97 78 chrX 82167521 82167878 -94806262 - L1ME1 LINE L1 -5305 1118 740 471 320 43 20 chrX 82168368 82168668 -94805472 - L1ME1 LINE L1 -6100 323 17 673 252 0 0 chrX 82168813 82168940 -94805200 - FLAM_A SINE Alu -6 127 1 203 274 206 0 chrX 82169023 82169125 -94805015 - L2 LINE L2 -4 3309 3187 5189 160 44 8 chrX 82169475 82170646 -94803494 - L1MA7 LINE L1 -5 6286 5070 460 361 6 0 chrX 82170647 82170813 -94803327 - L2 LINE L2 -1327 1987 1821 23 68 0 0 chrX 82171939 82171983 -94802157 + AT_rich Low_complexity Low_complexity 1 44 0 5865 162 5 3 chrX 82172009 82173448 -94800692 - L1MA1 LINE L1 -97 7624 6185 * 19536 175 27 19 chrX 82173443 82173546 -94800594 - L1MA1 LINE L1 -3720 3845 3744 1641 203 0 7 chrX 82173546 82173847 -94800293 - AluSx SINE Alu -12 300 2 19536 175 27 19 chrX 82173847 82177546 -94796594 - L1MA1 LINE L1 -3821 3744 17 23 54 0 0 chrX 82177863 82177900 -94796240 + AT_rich Low_complexity Low_complexity 1 37 0 3171 134 87 33 chrX 82178801 82179412 -94794728 - LTR9B LTR ERV1 0 644 1 3225 118 36 84 chrX 82179688 82180318 -94793822 - MER4A LTR ERV1 0 600 1 1242 206 101 125 chrX 82180366 82180897 -94793243 - LTR36 LTR ERV1 0 611 96 4710 124 19 30 chrX 82180897 82181685 -94792455 - MER4E LTR ERV1 0 779 1 1242 206 101 125 chrX 82181685 82181779 -94792361 - LTR36 LTR ERV1 -515 96 1 1143 171 0 61 chrX 82181823 82182051 -94792089 + AluJo SINE Alu 85 298 -14 1786 191 42 12 chrX 82182764 82183188 -94790952 + LTR23 LTR ERV1 1 437 0 1200 309 55 30 chrX 82183506 82183978 -94790162 - L1M4b LINE L1 -6035 824 341 23 33 0 0 chrX 82184019 82184049 -94790091 + AT_rich Low_complexity Low_complexity 1 30 0 2364 133 4 133 chrX 82184234 82184774 -94789366 - LTR8 LTR ERV1 -1 690 222 1134 166 55 35 chrX 82184774 82185209 -94788931 + MER61D LTR ERV1 1 501 0 1465 126 9 9 chrX 82185209 82185432 -94788708 - LTR8 LTR ERV1 -468 223 1 1242 287 5 31 chrX 82185773 82186345 -94787795 + MER76 LTR ERV 6 654 -34 888 213 71 24 chrX 82186356 82186567 -94787573 - L1M4b LINE L1 -6627 232 12 2416 63 0 35 chrX 82187532 82187851 -94786289 - AluY SINE Alu -3 308 1 198 0 0 0 chrX 82188219 82188241 -94785899 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2608 26 3 0 chrX 82188241 82188547 -94785593 - L1PA4 LINE L1 -18 6137 5831 25 51 0 0 chrX 82188849 82188888 -94785252 + AT_rich Low_complexity Low_complexity 1 39 0 4934 163 33 16 chrX 82188955 82189922 -94784218 - L1MC1 LINE L1 -1 6332 5350 3333 134 2 4 chrX 82189994 82190507 -94783633 + MER75 DNA T2_type 1 512 -2 252 86 0 0 chrX 82191373 82191408 -94782732 + (CA)n Simple_repeat Simple_repeat 1 35 0 458 256 38 0 chrX 82191410 82191543 -94782597 + MER112 DNA MER1_type 89 226 -34 935 120 0 0 chrX 82191543 82191698 -94782442 - AluSg/x SINE Alu 0 311 157 305 101 43 29 chrX 82191701 82191770 -94782370 + L1MC3 LINE L1 7699 7768 -17 1004 107 0 0 chrX 82191775 82191906 -94782234 - AluSg SINE Alu -179 131 1 227 319 44 35 chrX 82191934 82192047 -94782093 + MER5A DNA MER1_type 2 115 -74 * 308 333 11 0 chrX 82191964 82192054 -94782086 - MER5A DNA MER1_type -21 168 78 2967 204 34 33 chrX 82192235 82193000 -94781140 - L1MD1 LINE L1 -2 6240 5475 3128 200 34 22 chrX 82193007 82193737 -94780403 - L1MC3 LINE L1 -8 7777 7039 660 181 0 4 chrX 82193738 82193884 -94780256 - L1MD1 LINE L1 -770 5472 5342 859 253 119 67 chrX 82193912 82194625 -94779515 - L1MD1 LINE L1 -1031 5115 4366 3325 279 40 21 chrX 82194628 82196083 -94778057 - L1MD1 LINE L1 -2434 3712 2230 404 255 250 21 chrX 82196219 82196411 -94777729 - LTR16C LTR ERVL -159 332 97 1443 356 46 23 chrX 82196867 82197270 -94776870 - ERVL LTR ERVL -670 5094 4702 2108 181 31 17 chrX 82197270 82197690 -94776450 + MSTB LTR MaLR 1 426 0 1443 356 46 23 chrX 82197690 82198193 -94775947 - ERVL LTR ERVL -1062 4702 4167 1166 256 52 58 chrX 82198198 82198663 -94775477 + MLT1C LTR MaLR 6 467 0 2047 167 44 113 chrX 82199197 82199755 -94774385 - MLT2B3 LTR ERVL -2 552 36 2079 131 33 41 chrX 82199755 82200122 -94774018 + THE1B LTR MaLR 1 364 0 2047 167 44 113 chrX 82200122 82200156 -94773984 - MLT2B3 LTR ERVL -518 36 1 301 360 26 13 chrX 82200272 82200425 -94773715 + MIR SINE MIR 34 188 -74 184 262 97 97 chrX 82200461 82200564 -94773576 - MIR3 SINE MIR -104 104 2 240 318 39 39 chrX 82202007 82202136 -94772004 + MIR SINE MIR 88 216 -46 2559 30 0 0 chrX 82202283 82202581 -94771559 + AluY SINE Alu 1 298 -13 3331 147 86 16 chrX 82203780 82204386 -94769754 - MER51A LTR ERV1 0 640 1 298 331 21 70 chrX 82204441 82204583 -94769557 - L2 LINE L2 -1 3271 3137 180 111 0 0 chrX 82204583 82204610 -94769530 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 406 371 78 12 chrX 82204801 82205057 -94769083 - L2 LINE L2 -402 2912 2640 319 316 68 0 chrX 82205167 82205284 -94768856 + L2 LINE L2 3188 3312 -1 428 100 129 0 chrX 82205619 82205689 -94768451 - MADE1 DNA Mariner 0 80 2 2206 89 24 0 chrX 82207634 82207927 -94766213 + AluSp SINE Alu 14 313 0 312 287 40 20 chrX 82208410 82208511 -94765629 + MER5A DNA MER1_type 87 189 0 512 281 144 0 chrX 82208554 82208700 -94765440 - L2 LINE L2 -565 2749 2583 2285 121 8 11 chrX 82209241 82209597 -94764543 - THE1A LTR MaLR 0 355 1 11079 110 4 2 chrX 82209597 82211174 -94762966 - THE1A-int LTR MaLR 0 1580 1 2179 138 8 8 chrX 82211174 82211529 -94762611 - THE1A LTR MaLR 0 355 1 1633 253 93 39 chrX 82212425 82213019 -94761121 + MLT1E2 LTR MaLR 1 626 0 2967 159 55 7 chrX 82213629 82214173 -94759967 - Tigger3b DNA MER2_type -3 1228 659 943 78 78 0 chrX 82214173 82214302 -94759838 + MER85 DNA T2_type 1 139 0 2577 135 9 2 chrX 82214306 82214736 -94759404 - Tigger3b DNA MER2_type -574 657 225 697 152 17 232 chrX 82214952 82215254 -94758886 + Tigger3(Golem) DNA MER2_type 20 256 -2773 717 135 56 218 chrX 82215275 82215615 -94758525 - Tigger3(Golem) DNA MER2_type -2725 304 20 368 338 119 37 chrX 82215725 82215994 -94758146 + L2 LINE L2 2952 3242 -71 32 0 0 0 chrX 82216107 82216139 -94758001 + AT_rich Low_complexity Low_complexity 1 32 0 609 279 23 6 chrX 82216501 82216673 -94757467 + MIR3 SINE MIR 20 194 -14 1245 169 16 4 chrX 82216795 82217043 -94757097 - L1MA4 LINE L1 -9 6291 6041 273 342 54 40 chrX 82217322 82217471 -94756669 + L2 LINE L2 3122 3272 0 310 324 47 27 chrX 82218745 82218893 -94755247 - MIR SINE MIR -46 216 66 372 22 0 0 chrX 82219143 82219188 -94754952 + (CA)n Simple_repeat Simple_repeat 2 46 0 429 332 10 40 chrX 82219581 82219780 -94754360 + L1MEd LINE L1 736 928 -5488 389 252 108 41 chrX 82219782 82220001 -94754139 + L1MEd LINE L1 1259 1549 -4867 819 233 38 74 chrX 82220006 82220116 -94754024 + L1MC5 LINE L1 7465 7577 -384 2603 148 24 5 chrX 82220116 82220534 -94753606 + MSTB LTR MaLR 1 426 0 819 233 38 74 chrX 82220534 82220869 -94753271 + L1MC5 LINE L1 7577 7894 -67 28 29 0 0 chrX 82220872 82220907 -94753233 + AT_rich Low_complexity Low_complexity 1 35 0 311 313 122 14 chrX 82220959 82221237 -94752903 + L1MEd LINE L1 1652 1959 -4648 22 56 0 0 chrX 82221339 82221375 -94752765 + AT_rich Low_complexity Low_complexity 1 36 0 39 22 0 0 chrX 82221434 82221480 -94752660 + AT_rich Low_complexity Low_complexity 1 46 0 1814 198 18 3 chrX 82221640 82221974 -94752166 + MER7A DNA MER2_type 1 337 -9 372 291 31 24 chrX 82222076 82222368 -94751772 + L1MEd LINE L1 2529 2822 -3604 738 289 48 14 chrX 82222397 82222605 -94751535 + MER58A DNA MER1_type 7 221 -3 334 276 90 19 chrX 82222640 82222796 -94751344 + L1MEd LINE L1 2865 3031 -3395 266 218 0 0 chrX 82222796 82222851 -94751289 + L1PA16 LINE L1 5936 5990 -176 2136 211 55 98 chrX 82222853 82223578 -94750562 - LTR8A LTR ERV1 0 727 34 817 176 57 0 chrX 82223594 82223753 -94750387 + L1PA16 LINE L1 5990 6157 -9 426 268 135 22 chrX 82223766 82224390 -94749750 + L1MEd LINE L1 3035 3728 -2698 3221 244 34 63 chrX 82224415 82225007 -94749133 + L1M4 LINE L1 14 565 -5977 1989 155 0 13 chrX 82225007 82225323 -94748817 - AluSx SINE Alu 0 312 1 3221 244 34 63 chrX 82225323 82225777 -94748363 + L1M4 LINE L1 565 1030 -5512 1217 210 77 32 chrX 82226925 82227368 -94746772 + L1M4 LINE L1 1035 1497 -5045 800 297 31 6 chrX 82227371 82227691 -94746449 + L1M4 LINE L1 1839 2166 -4480 1809 192 3 30 chrX 82227792 82228161 -94745979 + MLT1A1 LTR MaLR 3 361 -4 3400 234 6 26 chrX 82228166 82228960 -94745180 + MLT1A1-int LTR MaLR 2 779 -956 440 376 35 12 chrX 82228960 82229133 -94745007 + MLT1A1-int LTR MaLR 1096 1272 -463 1975 203 7 33 chrX 82229273 82229697 -94744443 + MLT1A1-int LTR MaLR 1318 1730 -5 228 275 37 28 chrX 82229684 82229702 -94744438 + L1M4 LINE L1 2331 2347 -4299 * 1651 220 5 14 chrX 82229702 82230070 -94744070 + MLT1A1 LTR MaLR 1 365 0 228 275 37 28 chrX 82230070 82230160 -94743980 + L1M4 LINE L1 2347 2440 -4206 * 1576 209 11 14 chrX 82230156 82230525 -94743615 + L1MA5 LINE L1 4499 4866 -1280 1672 180 33 35 chrX 82230533 82231004 -94743136 - LTR49 LTR ERV1 -3 592 35 1936 105 58 0 chrX 82231004 82231280 -94742860 + AluSc SINE Alu 1 292 -17 1672 180 33 35 chrX 82231280 82231315 -94742825 - LTR49 LTR ERV1 -560 35 1 5488 168 35 4 chrX 82231315 82232701 -94741439 + L1MA5 LINE L1 4867 6294 -6 2279 89 0 0 chrX 82233002 82233295 -94740845 + AluSc SINE Alu 1 293 -16 925 305 4 86 chrX 82233681 82234133 -94740007 - L2 LINE L2 -31 3282 2868 611 319 4 33 chrX 82234353 82234626 -94739514 + L1M4 LINE L1 4388 4652 -1992 468 346 122 55 chrX 82234634 82235494 -94738646 + L2 LINE L2 2352 3272 0 2736 13 0 13 chrX 82235666 82235981 -94738159 + AluYb8 SINE Alu 1 311 -7 1373 304 44 16 chrX 82236329 82236780 -94737360 + LTR16C LTR ERVL 28 491 0 7469 30 0 10 chrX 82237082 82238746 -94735394 - L1PA4 LINE L1 0 6155 4530 28 0 0 0 chrX 82238788 82238816 -94735324 + AT_rich Low_complexity Low_complexity 1 28 0 4784 98 15 10 chrX 82239477 82240204 -94733936 - L1MA1 LINE L1 0 6302 5572 8564 197 28 2 chrX 82240205 82241787 -94732353 + MLT1A1-int LTR MaLR 27 1649 -2 2027 167 77 15 chrX 82241789 82242190 -94731950 + MSTB LTR MaLR 1 426 0 189 107 0 0 chrX 82242239 82242267 -94731873 + (T)n Simple_repeat Simple_repeat 1 28 0 434 306 7 21 chrX 82242540 82242684 -94731456 - L2 LINE L2 -4 3309 3168 13450 198 28 21 chrX 82242736 82249302 -94724838 + L1PB1 LINE L1 1 6866 -1 26 64 0 0 chrX 82249403 82249450 -94724690 + AT_rich Low_complexity Low_complexity 1 47 0 1398 233 11 0 chrX 82249479 82249762 -94724378 - AluJb SINE Alu -16 286 1 337 233 14 55 chrX 82249699 82249772 -94724368 - AluJ/FLAM SINE Alu -239 63 1 221 385 49 16 chrX 82250166 82250288 -94723852 - L2 LINE L2 -242 3030 2905 21 57 0 0 chrX 82251959 82251994 -94722146 + AT_rich Low_complexity Low_complexity 1 35 0 381 215 97 11 chrX 82253444 82253537 -94720603 + MER2 DNA MER2_type 245 345 0 206 315 31 47 chrX 82254806 82254933 -94719207 - L2 LINE L2 -819 2495 2371 1157 171 104 106 chrX 82255100 82255551 -94718589 - LTR7 LTR ERV1 0 450 1 773 261 15 15 chrX 82255857 82256052 -94718088 + MIR SINE MIR 13 207 -55 592 258 157 22 chrX 82256148 82256377 -94717763 - MIR SINE MIR -1 261 2 761 301 23 19 chrX 82258029 82258285 -94715855 + MIR SINE MIR 6 262 0 27 29 0 0 chrX 82258466 82258500 -94715640 + AT_rich Low_complexity Low_complexity 1 34 0 2667 141 35 5 chrX 82259690 82259868 -94714272 + L1PB3 LINE L1 5306 5477 -677 399 41 0 0 chrX 82259868 82259917 -94714223 + (TA)n Simple_repeat Simple_repeat 1 49 0 2667 141 35 5 chrX 82259917 82260198 -94713942 + L1PB3 LINE L1 5477 5781 -373 964 176 16 0 chrX 82260206 82260393 -94713747 + L1PB1 LINE L1 6 195 -6668 12484 163 78 13 chrX 82260396 82265897 -94708243 + L1PB1 LINE L1 634 6507 -360 245 167 19 0 chrX 82265910 82265964 -94708176 + (CA)n Simple_repeat Simple_repeat 2 56 0 254 150 0 17 chrX 82265970 82266030 -94708110 - LTR66 LTR ERVL -176 434 376 207 197 14 28 chrX 82266030 82266101 -94708039 + (TA)n Simple_repeat Simple_repeat 1 70 0 339 25 0 0 chrX 82266117 82266157 -94707983 + (CA)n Simple_repeat Simple_repeat 1 40 0 2417 99 11 0 chrX 82266157 82266510 -94707630 + L1PB1 LINE L1 6510 6866 -1 2089 153 49 0 chrX 82266519 82266886 -94707254 + L1PB3 LINE L1 5770 6154 0 270 116 0 0 chrX 82266993 82267036 -94707104 + (TG)n Simple_repeat Simple_repeat 2 44 0 388 318 0 0 chrX 82267377 82267506 -94706634 + MER94 DNA DNA 2 130 -4 566 260 58 0 chrX 82267714 82267887 -94706253 - MIR SINE MIR 0 262 80 346 260 13 40 chrX 82267901 82268051 -94706089 + CT-rich Low_complexity Low_complexity 4 149 0 322 308 0 0 chrX 82268934 82269025 -94705115 + MIR SINE MIR 162 252 -10 1018 172 97 0 chrX 82269098 82269284 -94704856 - MER20 DNA MER1_type 0 219 16 186 71 0 0 chrX 82269627 82269655 -94704485 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 21 82 0 0 chrX 82270544 82270593 -94703547 + AT_rich Low_complexity Low_complexity 1 49 0 234 150 0 0 chrX 82270627 82270667 -94703473 + (TA)n Simple_repeat Simple_repeat 2 41 0 411 278 9 9 chrX 82271224 82271339 -94702801 - MIR3 SINE MIR -1 207 93 346 141 0 0 chrX 82272088 82272144 -94701996 - MLT2D LTR ERVL 0 414 366 2276 171 16 35 chrX 82272144 82272578 -94701562 - MSTC LTR MaLR -2 426 1 3512 271 107 71 chrX 82272578 82273854 -94700286 - THE1B-int LTR MaLR 0 1735 300 2712 107 0 3 chrX 82273854 82274219 -94699921 - THE1B LTR MaLR 0 364 1 3512 271 107 71 chrX 82274219 82274530 -94699610 - THE1B-int LTR MaLR -1435 300 2 2339 159 33 21 chrX 82274532 82274953 -94699187 - MSTC LTR MaLR 0 428 3 705 282 28 37 chrX 82274966 82275355 -94698785 - MLT2D LTR ERVL -57 407 21 703 255 19 39 chrX 82276712 82276920 -94697220 - MSTC LTR MaLR 0 396 193 1623 224 39 23 chrX 82276935 82277146 -94696994 - MSTB LTR MaLR -27 399 178 2299 104 0 0 chrX 82277146 82277455 -94696685 - AluSc SINE Alu 0 309 1 1623 224 39 23 chrX 82277455 82277632 -94696508 - MSTB LTR MaLR -248 178 5 2138 138 0 0 chrX 82277647 82277959 -94696181 - AluSx SINE Alu 0 312 1 13232 233 45 25 chrX 82277963 82282046 -94692094 - L1PA15-16 LINE L1 -754 6830 2664 * 18384 185 29 32 chrX 82282029 82282857 -94691283 - L1PB1 LINE L1 -8 6859 6030 210 71 0 0 chrX 82282857 82282885 -94691255 + (TTA)n Simple_repeat Simple_repeat 1 28 0 18384 185 29 32 chrX 82282885 82288904 -94685236 - L1PB1 LINE L1 -837 6030 5 4494 287 103 55 chrX 82288910 82291482 -94682658 - L1PA15-16 LINE L1 -4886 2695 2 279 343 10 0 chrX 82291492 82291591 -94682549 + L3 LINE CR1 1247 1346 -231 * 767 297 5 1 chrX 82291589 82291810 -94682330 + MIR SINE MIR 38 257 -5 1683 202 174 9 chrX 82291891 82292321 -94681819 + MLT1D LTR MaLR 1 501 -4 603 319 90 31 chrX 82292335 82292790 -94681350 - LTR33 LTR ERVL -3 518 37 598 336 69 48 chrX 82292806 82293332 -94680808 - L2 LINE L2 -26 3287 2751 422 256 72 8 chrX 82293531 82293656 -94680484 - MIR SINE MIR -101 161 29 432 277 87 41 chrX 82293836 82294031 -94680109 - MIR SINE MIR -55 207 4 227 164 0 36 chrX 82297538 82297593 -94676547 + T-rich Low_complexity Low_complexity 6 58 0 925 250 0 0 chrX 82297636 82297844 -94676296 - L1PA16 LINE L1 -5 6161 5954 1944 138 63 29 chrX 82298716 82299065 -94675075 - THE1B LTR MaLR 0 364 4 10405 115 21 15 chrX 82299068 82300637 -94673503 - THE1B-int LTR MaLR -1 1579 2 2142 120 48 28 chrX 82300638 82300995 -94673145 - THE1B LTR MaLR 0 364 1 227 277 109 17 chrX 82301107 82301226 -94672914 + HAL1b LINE L1 784 913 -435 280 307 162 9 chrX 82301352 82301580 -94672560 + HAL1 LINE L1 2245 2507 0 340 276 226 28 chrX 82301610 82301827 -94672313 - MIR SINE MIR -1 261 2 893 213 60 58 chrX 82301879 82302017 -94672123 + MLT1E3 LTR MaLR 1 137 -487 2539 57 0 13 chrX 82302017 82302332 -94671808 + AluY SINE Alu 1 311 0 893 213 60 58 chrX 82302332 82302735 -94671405 + MLT1E3 LTR MaLR 137 624 0 268 230 207 0 chrX 82303474 82303561 -94670579 + MER70B LTR ERVL 456 560 -18 1689 170 43 0 chrX 82303832 82304161 -94669979 - L1MA8 LINE L1 -3 6288 5946 1177 177 25 53 chrX 82304212 82304495 -94669645 + LTR8A LTR ERV1 409 683 -44 198 0 0 0 chrX 82304500 82304522 -94669618 + (TG)n Simple_repeat Simple_repeat 1 22 0 391 298 70 45 chrX 82304544 82304808 -94669332 - L1ME LINE L1 -4986 1084 904 601 173 13 33 chrX 82304814 82304964 -94669176 - L1MB8 LINE L1 0 6178 6032 4378 243 37 9 chrX 82305011 82306578 -94667562 + L1M1 LINE L1 16 2304 -5261 4833 203 8 1 chrX 82306580 82307605 -94666535 - L1ME LINE L1 -2964 3116 2085 * 9108 157 131 70 chrX 82307598 82309253 -94664887 + L1PBa LINE L1 29 1993 -4870 2091 114 3 20 chrX 82309253 82309552 -94664588 + AluSx SINE Alu 1 294 -18 9108 157 131 70 chrX 82309552 82310509 -94663631 + L1PBa LINE L1 1993 2891 -3972 664 208 58 49 chrX 82310521 82310804 -94663336 - L1ME LINE L1 -5175 895 648 3554 204 40 0 chrX 82310817 82311443 -94662697 - L1PA13 LINE L1 -6135 652 2 17842 206 25 4 chrX 82311578 82315496 -94658644 + L1M1 LINE L1 2724 6726 -839 4749 120 17 25 chrX 82315494 82315755 -94658385 + L1PA13 LINE L1 5403 5665 -498 * 2295 100 3 0 chrX 82315755 82316054 -94658086 + AluSx SINE Alu 1 300 -12 4749 120 17 25 chrX 82316054 82316559 -94657581 + L1PA13 LINE L1 5665 6163 0 23 33 0 0 chrX 82316676 82316706 -94657434 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 82316750 82316772 -94657368 + AT_rich Low_complexity Low_complexity 1 22 0 1907 194 25 39 chrX 82317411 82317848 -94656292 + MSTB1 LTR MaLR 2 432 0 23 0 0 0 chrX 82318030 82318053 -94656087 + AT_rich Low_complexity Low_complexity 1 23 0 267 264 64 18 chrX 82318181 82318291 -94655849 - MER103 DNA DNA -49 117 3 180 111 0 0 chrX 82318804 82318831 -94655309 + (TTCTCC)n Simple_repeat Simple_repeat 2 28 0 35 41 0 0 chrX 82319284 82319333 -94654807 + AT_rich Low_complexity Low_complexity 1 49 0 2176 153 53 13 chrX 82320055 82320434 -94653706 - MSTD LTR MaLR -2 394 1 198 0 0 0 chrX 82320481 82320503 -94653637 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1960 161 6 0 chrX 82320503 82320832 -94653308 - L1PB3 LINE L1 -11 6143 5813 222 176 0 0 chrX 82321176 82321227 -94652913 + (TG)n Simple_repeat Simple_repeat 2 52 0 291 325 38 50 chrX 82321416 82321576 -94652564 - MER5A DNA MER1_type -22 167 10 410 128 52 23 chrX 82322199 82322371 -94651769 + (TA)n Simple_repeat Simple_repeat 2 178 0 220 185 37 0 chrX 82322372 82322426 -94651714 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 200 261 0 0 chrX 82322807 82322853 -94651287 - L2 LINE L2 -1106 2208 2163 671 310 12 16 chrX 82323011 82323269 -94650871 - MIR SINE MIR -2 260 4 232 338 0 13 chrX 82323281 82323358 -94650782 + L2 LINE L2 3232 3307 -6 2192 91 31 6 chrX 82323915 82324305 -94649835 - LTR7 LTR ERV1 0 450 1 200 366 46 23 chrX 82324634 82324765 -94649375 + L2 LINE L2 2771 2904 -410 650 266 269 25 chrX 82324778 82325135 -94649005 - L2 LINE L2 -19 3294 2851 2483 269 62 66 chrX 82325154 82326255 -94647885 - L2 LINE L2 -833 2481 1386 309 93 0 0 chrX 82326256 82326299 -94647841 + LTR32 LTR ERVL 15 57 -414 1501 165 13 0 chrX 82326338 82326575 -94647565 + LTR32 LTR ERVL 232 471 0 683 307 16 67 chrX 82326594 82326910 -94647230 - L2 LINE L2 -1973 1341 1042 366 256 12 0 chrX 82326915 82327001 -94647139 - MLT1J1 LTR MaLR -13 433 347 280 360 18 0 chrX 82327030 82327144 -94646996 + L2 LINE L2 3184 3299 -14 2092 147 0 27 chrX 82327644 82327786 -94646354 - MER46B DNA MER2_type -2497 234 232 2503 60 13 0 chrX 82327786 82328088 -94646052 - AluSp SINE Alu -7 306 1 2092 147 0 27 chrX 82328088 82328313 -94645827 - MER46B DNA MER2_type -2499 232 2 24 0 0 0 chrX 82330363 82330387 -94643753 + AT_rich Low_complexity Low_complexity 1 24 0 364 195 11 0 chrX 82330595 82330682 -94643458 - L1PB4 LINE L1 -4 6152 6065 676 235 33 52 chrX 82331352 82331565 -94642575 + MER63A DNA MER1_type 2 210 0 219 270 0 27 chrX 82332069 82332143 -94641997 + T-rich Low_complexity Low_complexity 3 74 0 2392 83 3 0 chrX 82332244 82332545 -94641595 + AluSp SINE Alu 1 302 -11 343 286 152 23 chrX 82332563 82332734 -94641406 + MIR SINE MIR 1 193 -69 597 39 39 0 chrX 82332856 82332933 -94641207 + MADE1 DNA Mariner 1 80 0 21 0 0 0 chrX 82333468 82333489 -94640651 + AT_rich Low_complexity Low_complexity 1 21 0 833 142 51 25 chrX 82333501 82333646 -94640494 - L1MA8 LINE L1 -22 6269 6141 4196 143 29 12 chrX 82333646 82334375 -94639765 + L1PA16 LINE L1 5420 6165 -1 833 142 51 25 chrX 82334375 82334418 -94639722 - L1MA8 LINE L1 -150 6141 6101 1009 261 29 0 chrX 82335289 82335595 -94638545 - L1MEc LINE L1 -3283 2932 2618 6279 219 48 17 chrX 82335598 82335951 -94638189 + L1 LINE L1 3503 3843 -2303 2275 97 0 0 chrX 82335951 82336239 -94637901 + AluSx SINE Alu 1 288 -24 6279 219 48 17 chrX 82336239 82337498 -94636642 + L1 LINE L1 3843 5166 -980 955 124 174 18 chrX 82337575 82337793 -94636347 - LTR1 LTR ERV1 -533 252 1 28 29 0 0 chrX 82337861 82337896 -94636244 + AT_rich Low_complexity Low_complexity 1 35 0 346 300 0 0 chrX 82337910 82338000 -94636140 - L1MEc LINE L1 -4659 1737 1648 366 299 65 0 chrX 82338357 82338511 -94635629 + L1ME4a LINE L1 5745 5908 -213 204 40 0 0 chrX 82338780 82338805 -94635335 + (TC)n Simple_repeat Simple_repeat 2 26 0 2600 98 17 6 chrX 82338805 82339163 -94634977 - THE1B LTR MaLR -1 363 2 352 284 7 142 chrX 82339561 82339836 -94634304 + MIR SINE MIR 20 257 -5 986 278 66 42 chrX 82339998 82340423 -94633717 + L2 LINE L2 2879 3313 0 294 289 30 89 chrX 82340459 82340594 -94633546 - L2 LINE L2 -213 3059 2933 2432 196 14 34 chrX 82341100 82341660 -94632480 + LTR60 LTR ERV1 1 549 -37 349 187 67 80 chrX 82341533 82341683 -94632457 + TAR1 Satellite telomeric 34 181 -1930 * 1118 205 223 12 chrX 82342829 82343156 -94630984 + MSTD LTR MaLR 1 396 0 452 315 39 0 chrX 82343703 82343830 -94630310 - L2 LINE L2 -4 3268 3137 403 218 45 30 chrX 82344400 82344579 -94629561 - MER20 DNA MER1_type -3 216 1 941 220 5 14 chrX 82344628 82344851 -94629289 + L1M4 LINE L1 4050 4270 -1876 366 206 41 0 chrX 82344862 82344935 -94629205 - MER2 DNA MER2_type -1 344 269 943 229 5 5 chrX 82344971 82345176 -94628964 - MER2 DNA MER2_type -140 205 1 948 192 29 37 chrX 82345177 82345422 -94628718 + HERVL-B1 LTR ERVL 5412 5654 0 1713 218 95 24 chrX 82345422 82345876 -94628264 + MLT2B1 LTR ERVL 1 486 -34 819 258 71 4 chrX 82345876 82346116 -94628024 - L1M4 LINE L1 -1340 4806 4551 297 79 0 0 chrX 82346116 82346154 -94627986 - MLT2B1 LTR ERVL 0 520 483 369 0 0 0 chrX 82346154 82346195 -94627945 + (CA)n Simple_repeat Simple_repeat 2 42 0 1398 81 0 0 chrX 82346421 82346594 -94627546 + AluSp SINE Alu 132 304 -9 644 280 50 0 chrX 82347395 82347577 -94626563 - MIR SINE MIR -21 241 51 207 157 39 39 chrX 82347607 82347658 -94626482 + (TATG)n Simple_repeat Simple_repeat 4 54 0 779 340 73 45 chrX 82347687 82348110 -94626030 + LTR67 LTR ERVL 11 421 -136 2357 146 3 0 chrX 82348110 82348473 -94625667 - THE1B LTR MaLR 0 364 1 10614 103 23 27 chrX 82348473 82350060 -94624080 - THE1B-int LTR MaLR 0 1580 1 2625 113 0 0 chrX 82350062 82350424 -94623716 - THE1B LTR MaLR -2 362 1 779 340 73 45 chrX 82350424 82350528 -94623612 + LTR67 LTR ERVL 421 557 0 2448 82 0 0 chrX 82350972 82351276 -94622864 + AluY SINE Alu 2 305 -6 21 0 0 0 chrX 82351733 82351754 -94622386 + AT_rich Low_complexity Low_complexity 1 21 0 492 270 57 26 chrX 82351886 82352116 -94622024 + L1MC4 LINE L1 7116 7352 -690 335 278 184 33 chrX 82353137 82353184 -94620956 - MIR SINE MIR -16 246 207 2695 177 23 16 chrX 82353184 82353742 -94620398 - MER34B LTR ERV1 -3 562 1 335 278 184 33 chrX 82353742 82353906 -94620234 - MIR SINE MIR -55 207 3 344 202 106 11 chrX 82354377 82354471 -94619669 + MER103 DNA DNA 1 103 -63 24 0 0 0 chrX 82354526 82354550 -94619590 + AT_rich Low_complexity Low_complexity 1 24 0 1454 137 20 31 chrX 82354553 82354596 -94619544 - L1MA9 LINE L1 -5 6307 6265 1938 158 3 0 chrX 82354596 82354893 -94619247 + AluJb SINE Alu 1 298 -14 1454 137 20 31 chrX 82354893 82355141 -94618999 - L1MA9 LINE L1 -47 6265 6019 1058 315 163 16 chrX 82355366 82355979 -94618161 + HAL1 LINE L1 1 703 -1804 3495 125 22 12 chrX 82355979 82356557 -94617583 - Tigger4(Zombi) DNA MER2_type 0 2731 2148 1224 198 4 21 chrX 82356552 82356790 -94617350 - Tigger4(Zombi) DNA MER2_type -2496 235 2 * 466 287 83 6 chrX 82356838 82356995 -94617145 + HAL1 LINE L1 784 952 -1555 1684 274 114 28 chrX 82357042 82357490 -94616650 + HAL1 LINE L1 1062 1470 -1037 1368 197 13 52 chrX 82357490 82357799 -94616341 + AluJo SINE Alu 1 297 -15 1684 274 114 28 chrX 82357799 82358204 -94615936 + HAL1 LINE L1 1470 1988 -519 828 261 59 20 chrX 82358205 82358508 -94615632 + HAL1 LINE L1 2068 2382 -125 2125 178 3 0 chrX 82358614 82358979 -94615161 - MER47A DNA MER2_type 0 366 1 566 319 111 32 chrX 82359071 82359193 -94614947 + L1 LINE L1 2804 2915 -3231 6369 83 27 0 chrX 82359193 82360881 -94613259 + L1PA10 LINE L1 4441 6166 -2 566 319 111 32 chrX 82360881 82361618 -94612522 + L1 LINE L1 2915 3736 -2410 356 245 61 20 chrX 82361753 82361851 -94612289 + MER5A DNA MER1_type 87 188 -1 617 295 136 50 chrX 82362023 82362684 -94611456 + L1 LINE L1 4104 4821 -1325 335 281 119 42 chrX 82362995 82363255 -94610885 + MLT1L LTR MaLR 332 611 -4 6564 140 38 25 chrX 82363866 82365081 -94609059 + Tigger3b DNA MER2_type 1 1231 0 1785 202 29 0 chrX 82365409 82365760 -94608380 - MLT1A1 LTR MaLR -4 361 1 457 304 76 11 chrX 82366104 82366288 -94607852 - MIR3 SINE MIR -9 199 4 948 135 35 0 chrX 82366837 82367007 -94607133 + L1MA8 LINE L1 6112 6287 -4 23 0 0 0 chrX 82367014 82367037 -94607103 + AT_rich Low_complexity Low_complexity 1 23 0 29 59 0 15 chrX 82367880 82367920 -94606220 + AT_rich Low_complexity Low_complexity 1 41 -26 571 165 0 0 chrX 82367920 82368017 -94606123 - HY3 scRNA scRNA -2 99 3 29 59 0 15 chrX 82368017 82368044 -94606096 + AT_rich Low_complexity Low_complexity 41 67 0 264 296 14 0 chrX 82368046 82368117 -94606023 - MIR SINE MIR -3 259 188 * 574 286 109 5 chrX 82368112 82368304 -94605836 + L2 LINE L2 433 644 -2670 250 296 0 0 chrX 82368305 82368359 -94605781 - MER8 DNA MER2_type 0 239 186 267 169 13 143 chrX 82368373 82368450 -94605690 - MER8 DNA MER2_type -172 67 1 2127 294 124 22 chrX 82368459 82368855 -94605285 + L2 LINE L2 653 1007 -2307 1976 196 53 66 chrX 82368855 82369473 -94604667 - LTR38B LTR ERV1 0 610 1 2127 294 124 22 chrX 82369473 82369977 -94604163 + L2 LINE L2 1007 1645 -1669 1501 299 73 27 chrX 82369977 82370610 -94603530 + L2 LINE L2 2075 2736 -578 244 303 91 0 chrX 82370656 82370722 -94603418 + L2 LINE L2 2879 2950 -364 1232 152 14 9 chrX 82370836 82371053 -94603087 - L1PB4 LINE L1 -1 6155 5938 561 367 62 29 chrX 82371415 82371849 -94602291 + L2 LINE L2 2638 3077 -195 1298 147 22 22 chrX 82372472 82372704 -94601436 + MSTB1 LTR MaLR 201 432 0 567 215 23 0 chrX 82372704 82372834 -94601306 + MSTB1-int LTR MaLR 1 133 -1518 1261 144 31 16 chrX 82372834 82373091 -94601049 + L1MA8 LINE L1 6025 6285 -6 25 0 0 0 chrX 82373091 82373116 -94601024 + AT_rich Low_complexity Low_complexity 1 25 0 305 234 0 0 chrX 82373917 82373981 -94600159 - L1MC4 LINE L1 -1339 6703 6640 228 333 48 0 chrX 82374701 82374806 -94599334 - MIR SINE MIR -15 247 138 324 0 0 0 chrX 82376919 82376955 -94597185 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 234 344 36 0 chrX 82376994 82377169 -94596971 + L1ME LINE L1 5481 5661 -460 2313 135 10 0 chrX 82377172 82377595 -94596545 - MSTA-int LTR MaLR -5 423 1 2462 176 7 2 chrX 82377595 82378021 -94596119 - MSTA LTR MaLR 0 428 1 25 102 0 0 chrX 82378810 82378898 -94595242 + AT_rich Low_complexity Low_complexity 1 88 0 180 0 0 0 chrX 82379086 82379106 -94595034 + (TA)n Simple_repeat Simple_repeat 2 21 0 1459 303 77 42 chrX 82379470 82379887 -94594253 + L1MB1 LINE L1 1 402 -5489 2248 100 0 0 chrX 82379887 82380186 -94593954 + AluSq SINE Alu 1 299 -14 1459 303 77 42 chrX 82380186 82380882 -94593258 + L1MB1 LINE L1 402 905 -4986 3525 206 20 4 chrX 82380883 82381637 -94592503 + L1MB1 LINE L1 4156 4921 -1049 3452 176 32 24 chrX 82381637 82382342 -94591798 + L1MB1 LINE L1 5274 5990 -2 26 0 0 0 chrX 82383083 82383109 -94591031 + AT_rich Low_complexity Low_complexity 1 26 0 2056 161 114 5 chrX 82383497 82383883 -94590257 - MSTA LTR MaLR 0 428 1 364 234 54 9 chrX 82383929 82384040 -94590100 - LTR33A LTR ERVL -2 521 406 849 137 6 11 chrX 82384557 82384713 -94589427 - L1PA15 LINE L1 -290 5831 5679 2081 175 0 3 chrX 82384713 82385078 -94589062 + L1PA15 LINE L1 5800 6164 -1 319 273 36 9 chrX 82385480 82385590 -94588550 - Charlie8 DNA MER1_type -2273 144 32 550 309 81 9 chrX 82385743 82385966 -94588174 - MIR SINE MIR -21 241 3 1475 340 87 31 chrX 82386141 82387169 -94586971 + L2 LINE L2 1569 2653 -661 319 223 20 128 chrX 82387691 82387802 -94586338 - L1ME LINE L1 -462 5659 5566 2119 83 55 0 chrX 82387802 82388092 -94586048 + AluSp SINE Alu 1 306 -7 319 223 20 128 chrX 82388092 82388128 -94586012 - L1ME LINE L1 -555 5566 5528 308 250 0 12 chrX 82388330 82388414 -94585726 - MIR SINE MIR -12 250 168 5989 191 11 10 chrX 82388943 82390243 -94583897 + L1 LINE L1 4077 5378 -768 221 194 0 0 chrX 82390282 82390318 -94583822 - L3b LINE CR1 -13 1570 1535 33 0 0 0 chrX 82390520 82390553 -94583587 + AT_rich Low_complexity Low_complexity 1 33 0 621 242 77 77 chrX 82391017 82391265 -94582875 + MLT1L LTR MaLR 28 275 -340 383 119 15 0 chrX 82391393 82391460 -94582680 + (GA)n Simple_repeat Simple_repeat 1 68 0 36 19 0 19 chrX 82391500 82391517 -94582623 + AT_rich Low_complexity Low_complexity 1 17 -36 1624 72 4 91 chrX 82391517 82391780 -94582360 + AluY SINE Alu 1 240 -71 36 19 0 19 chrX 82391780 82391816 -94582324 + AT_rich Low_complexity Low_complexity 17 53 0 21 0 0 0 chrX 82392554 82392575 -94581565 + AT_rich Low_complexity Low_complexity 1 21 0 1214 254 3 3 chrX 82392630 82392929 -94581211 + AluJo SINE Alu 3 301 -11 378 85 0 0 chrX 82393469 82393528 -94580612 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 3582 87 0 0 chrX 82393715 82394197 -94579943 - L1PA6 LINE L1 0 6154 5673 923 115 0 0 chrX 82394197 82394327 -94579813 + L1PA6 LINE L1 5914 6043 -111 18844 49 0 6 chrX 82394343 82397055 -94577085 - L1P2 LINE L1 -487 5667 2974 5251 89 15 28 chrX 82397457 82398251 -94575889 + L1PA10 LINE L1 5271 6054 -114 3225 201 78 107 chrX 82398247 82399096 -94575044 + L1MCa LINE L1 75 947 -5479 * 2436 85 0 0 chrX 82399096 82399402 -94574738 + AluSg SINE Alu 1 306 -4 3225 201 78 107 chrX 82399402 82400547 -94573593 + L1MCa LINE L1 947 1881 -4545 547 215 33 0 chrX 82400547 82400668 -94573472 + MER92B LTR ERV1 483 607 -29 3225 201 78 107 chrX 82400668 82401271 -94572869 + L1MCa LINE L1 1881 2500 -3926 1769 208 17 9 chrX 82401272 82401734 -94572406 - MLT2B2 LTR ERVL -2 513 1 297 179 0 15 chrX 82401734 82401801 -94572339 + L1MCa LINE L1 2534 2599 -4008 * 313 173 12 25 chrX 82401796 82401877 -94572263 + L1MA7 LINE L1 6188 6267 -24 1573 234 73 11 chrX 82401938 82402433 -94571707 + L1MCa LINE L1 2744 3312 -3114 286 22 0 44 chrX 82402433 82402478 -94571662 + (TA)n Simple_repeat Simple_repeat 2 44 0 1573 234 73 11 chrX 82402478 82402528 -94571612 + L1MCa LINE L1 3312 3357 -3069 1586 135 32 21 chrX 82402535 82402817 -94571323 + MST-int LTR MaLR 319 603 -1048 824 332 40 50 chrX 82403030 82403653 -94570487 - L1PA15-16 LINE L1 -6228 621 5 3947 235 35 24 chrX 82403653 82404931 -94569209 - L1M LINE L1 -846 5300 4015 410 274 97 24 chrX 82405049 82405297 -94568843 - L1M4 LINE L1 -6275 267 2 433 0 35 0 chrX 82405384 82405441 -94568699 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2277 93 7 3 chrX 82405455 82405755 -94568385 - AluSp SINE Alu -12 301 1 22 80 0 0 chrX 82406002 82406052 -94568088 + AT_rich Low_complexity Low_complexity 1 50 0 411 302 119 13 chrX 82406094 82406329 -94567811 + L1MC/D LINE L1 5496 5755 -2053 189 0 0 0 chrX 82406502 82406523 -94567617 + (T)n Simple_repeat Simple_repeat 1 21 0 2305 172 13 3 chrX 82406546 82406936 -94567204 - MER57A LTR ERV1 -2 401 8 36 0 0 0 chrX 82407666 82407702 -94566438 + AT_rich Low_complexity Low_complexity 1 36 0 412 229 64 0 chrX 82409426 82409535 -94564605 + MIR SINE MIR 34 149 -113 372 43 0 0 chrX 82409555 82409601 -94564539 + (TA)n Simple_repeat Simple_repeat 2 47 0 2488 65 0 31 chrX 82409607 82409928 -94564212 - AluY SINE Alu 0 311 1 1042 186 51 21 chrX 82410308 82410544 -94563596 + L1MA10 LINE L1 6081 6323 -11 216 97 0 0 chrX 82410754 82410785 -94563355 + (TA)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chrX 82410794 82410822 -94563318 + AT_rich Low_complexity Low_complexity 1 28 0 1975 199 5 15 chrX 82410882 82411275 -94562865 - MLT1B LTR MaLR 0 390 2 1830 253 39 25 chrX 82411277 82411759 -94562381 - MLT1B-int LTR MaLR -1 1370 882 1577 233 35 3 chrX 82411865 82412208 -94561932 - MLT1B-int LTR MaLR -484 887 534 387 0 0 0 chrX 82412208 82412251 -94561889 + (TA)n Simple_repeat Simple_repeat 2 44 0 1587 233 34 29 chrX 82412253 82412729 -94561411 + L1MA9 LINE L1 5797 6274 -38 2942 166 19 0 chrX 82412775 82413294 -94560846 - MLT1B-int LTR MaLR -841 530 2 2097 166 13 20 chrX 82413295 82413687 -94560453 - MLT1B LTR MaLR 0 390 2 542 296 65 0 chrX 82413781 82413984 -94560156 + MIR SINE MIR 38 251 -11 411 250 40 16 chrX 82414172 82414296 -94559844 + MIR SINE MIR 53 179 -83 192 191 21 43 chrX 82414293 82414340 -94559800 + L2 LINE L2 3223 3268 -4 * 370 271 0 0 chrX 82414347 82414443 -94559697 - MIR SINE MIR -1 261 166 245 233 23 35 chrX 82414446 82414532 -94559608 + MLT1K LTR MaLR 504 588 0 578 175 10 0 chrX 82414959 82415056 -94559084 + MLT1B LTR MaLR 2 99 -291 330 26 0 0 chrX 82415058 82415097 -94559043 + (CA)n Simple_repeat Simple_repeat 1 39 0 2326 48 3 20 chrX 82415184 82415478 -94558662 + AluY SINE Alu 1 289 -22 1010 262 109 28 chrX 82416090 82416225 -94557915 + L2 LINE L2 2889 3012 -301 668 268 61 0 chrX 82416225 82416389 -94557751 + MER96 DNA MER1_type 1 174 -1 1010 262 109 28 chrX 82416389 82416646 -94557494 + L2 LINE L2 3012 3313 0 330 388 82 11 chrX 82416654 82416922 -94557218 + L2 LINE L2 2887 3173 -99 464 313 83 14 chrX 82416963 82417180 -94556960 + MIR SINE MIR 31 262 0 677 301 57 5 chrX 82417326 82417519 -94556621 - MER63A DNA MER1_type -6 204 2 24 0 0 0 chrX 82417696 82417720 -94556420 + AT_rich Low_complexity Low_complexity 1 24 0 2252 99 16 0 chrX 82418565 82418869 -94555271 - AluSc SINE Alu 0 309 1 248 280 32 32 chrX 82419166 82419259 -94554881 + MIR SINE MIR 35 127 -135 487 329 93 29 chrX 82419733 82419979 -94554161 - MIR SINE MIR 0 262 1 473 375 40 0 chrX 82420380 82420532 -94553608 + MER91A DNA MER1_type 12 169 -27 255 333 40 0 chrX 82420765 82420864 -94553276 - MIR SINE MIR -158 104 2 19214 190 30 13 chrX 82421172 82423205 -94550935 + L1M1 LINE L1 12 2009 -5556 1889 151 3 7 chrX 82423205 82423496 -94550644 + AluSx SINE Alu 2 291 -21 19214 190 30 13 chrX 82423496 82424823 -94549317 + L1M1 LINE L1 2009 3312 -4253 1855 144 49 0 chrX 82424823 82425107 -94549033 + AluSx SINE Alu 1 298 -14 19214 190 30 13 chrX 82425107 82426584 -94547556 + L1M1 LINE L1 3312 4934 -2631 7568 77 17 5 chrX 82426608 82427594 -94546546 - HERVL LTR ERVL -419 5235 4238 3248 198 27 4 chrX 82427594 82428337 -94545803 - L1 LINE L1 -1387 4759 4000 344 242 54 26 chrX 82428389 82428570 -94545570 - L1MC4 LINE L1 -1339 6983 1880 389 266 22 71 chrX 82428887 82429071 -94545069 - MLT1J LTR MaLR -333 178 4 4711 158 57 8 chrX 82429336 82430189 -94543951 + MER4D LTR ERV1 1 895 -8 2521 59 0 0 chrX 82430769 82431073 -94543067 + AluY SINE Alu 1 304 -7 15836 40 29 13 chrX 82431375 82433422 -94540718 - L1P LINE L1 -1094 5052 2974 1359 68 34 0 chrX 82433824 82434029 -94540111 + L1P4 LINE L1 5271 5482 -686 224 284 40 20 chrX 82434208 82434356 -94539784 + (TATATG)n Simple_repeat Simple_repeat 6 156 0 32 75 0 0 chrX 82434478 82434545 -94539595 + AT_rich Low_complexity Low_complexity 1 67 0 30241 60 1 6 chrX 82434582 82439373 -94534767 - L1PA4 LINE L1 -1 6154 1393 276 208 57 0 chrX 82440334 82440387 -94533753 - L2 LINE L2 0 3272 3217 389 280 39 28 chrX 82441307 82441489 -94532651 + L1MC/D LINE L1 5586 5769 -2039 * 2490 172 39 62 chrX 82441487 82442080 -94532060 + L1MA7 LINE L1 5652 6230 -61 394 107 0 0 chrX 82442129 82442185 -94531955 + L1MA7 LINE L1 5813 5868 -423 189 0 0 0 chrX 82442193 82442214 -94531926 + (TG)n Simple_repeat Simple_repeat 2 22 0 198 103 0 0 chrX 82442419 82442448 -94531692 + (TC)n Simple_repeat Simple_repeat 1 29 0 24 67 0 0 chrX 82442647 82442692 -94531448 + AT_rich Low_complexity Low_complexity 1 45 0 2383 121 25 0 chrX 82444625 82444980 -94529160 + THE1B LTR MaLR 1 364 0 1675 117 87 15 chrX 82444983 82445275 -94528865 - AluSx SINE Alu 0 311 1 1677 162 0 4 chrX 82445520 82445791 -94528349 + AluSx SINE Alu 38 307 -5 21 0 0 0 chrX 82446155 82446176 -94527964 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chrX 82446533 82446581 -94527559 + AT_rich Low_complexity Low_complexity 1 48 0 5269 64 22 1 chrX 82447094 82447786 -94526354 - L1PA8 LINE L1 -4 6168 5463 3901 104 14 3 chrX 82448335 82448909 -94525231 + L1PA13 LINE L1 5574 6153 -10 1658 111 4 4 chrX 82449371 82449615 -94524525 + THE1C-int LTR MaLR 1335 1578 -2 2495 122 22 8 chrX 82449617 82449987 -94524153 + THE1C LTR MaLR 1 375 0 737 325 156 45 chrX 82451080 82451966 -94522174 + L2 LINE L2 1495 2478 -836 187 139 0 28 chrX 82452028 82452064 -94522076 + L2 LINE L2 3234 3268 -4 243 0 0 0 chrX 82452374 82452401 -94521739 + (TG)n Simple_repeat Simple_repeat 1 27 0 5701 100 4 0 chrX 82453289 82454091 -94520049 - L1PA13 LINE L1 -11 6152 5348 376 327 27 0 chrX 82454278 82454388 -94519752 - L2 LINE L2 -4 3309 3197 2063 101 3 36 chrX 82454736 82455042 -94519098 + AluSg SINE Alu 11 306 -4 369 299 45 30 chrX 82456565 82456699 -94517441 - MIR SINE MIR -109 153 18 676 264 50 38 chrX 82457016 82457255 -94516885 - MIR SINE MIR 0 262 21 434 266 71 39 chrX 82457253 82457407 -94516733 - MIR SINE MIR -29 233 75 * 268 309 40 20 chrX 82458079 82458231 -94515909 + HERV16 LTR ERVL 3634 3788 -1208 * 628 287 77 16 chrX 82458219 82458519 -94515621 + HERV16 LTR ERVL 4077 4408 -1077 333 276 16 100 chrX 82458598 82458848 -94515292 + HERV16 LTR ERVL 4246 4474 -522 2254 82 0 0 chrX 82460025 82460341 -94513799 + AluSg1 SINE Alu 1 316 0 1008 154 34 99 chrX 82461003 82461236 -94512904 + MER20 DNA MER1_type 1 218 -1 1651 218 61 46 chrX 82461497 82461975 -94512165 - MLT1D LTR MaLR -20 485 1 24 53 0 0 chrX 82464065 82464103 -94510037 + AT_rich Low_complexity Low_complexity 1 38 0 244 232 24 49 chrX 82464273 82464355 -94509785 + MIR SINE MIR 183 262 0 349 290 71 24 chrX 82464527 82464578 -94509562 - MIR SINE MIR -7 255 208 1494 220 30 30 chrX 82464578 82464941 -94509199 + MLT1A1 LTR MaLR 1 363 -2 349 290 71 24 chrX 82464941 82465058 -94509082 - MIR SINE MIR -54 208 79 2347 143 14 2 chrX 82465724 82466143 -94507997 - L1MA5 LINE L1 -3 6297 5874 406 306 52 8 chrX 82466399 82466533 -94507607 - MER5A DNA MER1_type 0 189 50 31 76 0 0 chrX 82466614 82466680 -94507460 + AT_rich Low_complexity Low_complexity 1 66 0 7405 30 7 0 chrX 82467318 82468656 -94505484 + L1PA5 LINE L1 4806 6149 -5 3387 154 11 2 chrX 82469442 82469994 -94504146 - MER41D LTR ERV1 0 557 1 869 115 6 1 chrX 82470157 82470296 -94503844 - L1MA5 LINE L1 -236 5938 5855 1343 209 32 0 chrX 82470465 82470718 -94503422 + AluJo SINE Alu 31 291 -21 244 305 11 32 chrX 82471002 82471097 -94503043 - MIR SINE MIR -8 254 162 1989 165 0 9 chrX 82471097 82471413 -94502727 + MER1A DNA MER1_type 1 313 -216 6069 107 8 0 chrX 82471427 82472317 -94501823 - L1PB1 LINE L1 -1 6150 5254 2475 226 11 8 chrX 82472332 82472946 -94501194 + L1PB1 LINE L1 4627 5242 -904 1436 122 8 42 chrX 82472946 82473184 -94500956 + MER1A DNA MER1_type 293 522 -7 1087 203 239 23 chrX 82473317 82473627 -94500513 - MSTB LTR MaLR 0 426 50 283 140 193 0 chrX 82473627 82473684 -94500456 + L1PB3 LINE L1 5853 5920 -234 6056 103 64 1 chrX 82473694 82474565 -94499575 + HERVL LTR ERVL 3644 4569 -1085 1569 134 0 4 chrX 82474565 82474804 -94499336 + L1PB3 LINE L1 5916 6153 -1 4969 172 26 5 chrX 82474893 82476271 -94497869 - L1MA4 LINE L1 -100 6200 4801 3180 199 51 6 chrX 82476270 82476934 -94497206 - MSTA-int LTR MaLR -957 694 1 * 1723 170 141 24 chrX 82476934 82477146 -94496994 - MSTA LTR MaLR 0 428 242 2404 85 0 0 chrX 82477146 82477439 -94496701 - AluSc SINE Alu -16 293 1 1723 170 141 24 chrX 82477439 82477609 -94496531 - MSTA LTR MaLR -186 242 1 460 257 37 0 chrX 82478181 82478290 -94495850 + MIR SINE MIR 81 193 -69 491 266 55 15 chrX 82478705 82478869 -94495271 + MER5A DNA MER1_type 10 189 0 2125 125 3 3 chrX 82479127 82479431 -94494709 + AluSg SINE Alu 1 304 -6 368 364 112 16 chrX 82480038 82480288 -94493852 + MLT1K LTR MaLR 123 396 -192 216 219 0 0 chrX 82480506 82480547 -94493593 - L2 LINE L2 -4 3268 3228 541 357 16 36 chrX 82481104 82481356 -94492784 - MIR SINE MIR -13 249 3 2450 148 21 30 chrX 82481699 82482131 -94492009 - MSTA LTR MaLR 0 428 1 2312 51 0 44 chrX 82482944 82483282 -94490858 - AluY SINE Alu 0 325 1 499 114 13 0 chrX 82483664 82483743 -94490397 + MADE1 DNA Mariner 1 80 0 596 237 13 20 chrX 82484265 82484420 -94489720 - MLT1J2 LTR MaLR -243 166 15 2291 110 0 0 chrX 82484629 82484939 -94489201 + AluSg SINE Alu 1 310 0 2318 77 17 7 chrX 82485030 82485328 -94488812 + AluSp SINE Alu 1 301 -12 750 321 128 13 chrX 82485742 82486218 -94487922 - L2 LINE L2 -929 2385 1855 1756 222 72 53 chrX 82486679 82487210 -94486930 - LTR38 LTR ERV1 -14 542 2 40 49 0 0 chrX 82487587 82487648 -94486492 + AT_rich Low_complexity Low_complexity 1 61 0 205 319 84 17 chrX 82488054 82488173 -94485967 - MER5A DNA MER1_type -27 162 36 234 91 0 0 chrX 82488341 82488374 -94485766 + (A)n Simple_repeat Simple_repeat 1 33 0 349 309 34 34 chrX 82488502 82488603 -94485537 - MIR SINE MIR -7 255 155 1663 131 37 113 chrX 82488603 82489009 -94485131 - THE1C LTR MaLR 0 375 1 349 309 34 34 chrX 82489009 82489111 -94485029 - MIR SINE MIR -106 156 52 242 346 26 32 chrX 82489233 82489389 -94484751 + MIR3 SINE MIR 23 177 -31 396 336 14 14 chrX 82489894 82490034 -94484106 + MIR3 SINE MIR 5 144 -64 337 315 172 43 chrX 82490088 82490253 -94483887 + L2 LINE L2 1300 1505 -1809 2347 82 0 10 chrX 82490253 82490558 -94483582 - AluSc SINE Alu -7 302 1 337 315 172 43 chrX 82490558 82490624 -94483516 + L2 LINE L2 1505 1561 -1753 665 222 8 0 chrX 82490657 82490783 -94483357 - AluJb SINE Alu -185 127 1 245 269 13 13 chrX 82490788 82490866 -94483274 + L2 LINE L2 1602 1679 -1635 4202 193 33 28 chrX 82490906 82491990 -94482150 - L1MA9 LINE L1 -38 6274 5189 273 240 62 93 chrX 82492032 82492053 -94482087 + L2 LINE L2 1695 1715 -1599 1499 177 0 0 chrX 82492053 82492296 -94481844 + AluSx SINE Alu 1 243 -69 228 35 0 0 chrX 82492301 82492330 -94481810 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 273 240 62 93 chrX 82492330 82492431 -94481709 + L2 LINE L2 1719 1819 -1495 452 278 85 11 chrX 82492471 82492722 -94481418 + L2 LINE L2 1954 2307 -1007 303 355 26 20 chrX 82492772 82492924 -94481216 + LTR16B LTR ERVL 131 283 -181 735 240 98 56 chrX 82492978 82493336 -94480804 + LTR50 LTR ERVL 423 795 0 724 281 62 72 chrX 82493340 82493871 -94480269 - HAL1 LINE L1 -221 2286 1761 1260 216 52 21 chrX 82494697 82495026 -94479114 - MER2 DNA MER2_type -6 339 1 189 259 296 28 chrX 82495410 82495518 -94478622 - MER5B DNA MER1_type -2 176 40 357 307 80 20 chrX 82496254 82496404 -94477736 + MIR SINE MIR 49 207 -55 364 174 87 11 chrX 82497122 82497214 -94476926 + L1ME LINE L1 5558 5656 -465 25 0 0 0 chrX 82497266 82497291 -94476849 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chrX 82497923 82497943 -94476197 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 358 263 10 10 chrX 82498684 82498783 -94475357 - MIR SINE MIR -118 144 46 195 69 0 0 chrX 82499060 82499089 -94475051 + (TG)n Simple_repeat Simple_repeat 2 30 0 825 317 59 48 chrX 82499419 82499962 -94474178 - LTR38 LTR ERV1 -7 549 1 432 37 0 0 chrX 82500580 82500634 -94473506 + (TA)n Simple_repeat Simple_repeat 2 55 0 277 157 0 29 chrX 82501328 82501398 -94472742 + GA-rich Low_complexity Low_complexity 1 68 0 1984 100 64 8 chrX 82501751 82502124 -94472016 - LTR7 LTR ERV1 0 450 1 2299 87 0 23 chrX 82502869 82503179 -94470961 - AluY SINE Alu -4 307 5 604 113 21 10 chrX 82503239 82503336 -94470804 + MER4A LTR ERV1 1 98 -566 1644 144 6 51 chrX 82503336 82503698 -94470442 + MER4A LTR ERV1 261 664 0 5458 135 183 83 chrX 82503701 82504031 -94470109 + MER4A-int LTR ERV1 1 296 -6302 183 42 0 0 chrX 82504031 82504055 -94470085 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5458 135 183 83 chrX 82504055 82505371 -94468769 + MER4A-int LTR ERV1 296 1813 -4785 1132 130 108 71 chrX 82505350 82505534 -94468606 - MER4-int LTR ERV1 -3439 3159 2983 * 2088 135 0 0 chrX 82505534 82505838 -94468302 + AluSg SINE Alu 1 304 -6 1132 130 108 71 chrX 82505838 82506009 -94468131 - MER4-int LTR ERV1 -3615 2983 2785 2196 128 0 0 chrX 82506009 82506313 -94467827 - AluSx SINE Alu -8 304 1 1132 130 108 71 chrX 82506313 82506364 -94467776 - MER4-int LTR ERV1 -3813 2785 2737 1098 133 97 60 chrX 82506364 82506455 -94467685 + LTR8 LTR ERV1 1 87 -604 2120 110 3 0 chrX 82506455 82506747 -94467393 - AluSg SINE Alu -14 296 4 1098 133 97 60 chrX 82506747 82506903 -94467237 + LTR8 LTR ERV1 87 257 -434 2413 89 89 0 chrX 82506903 82507332 -94466808 - MER4-int LTR ERV1 -4103 2495 2029 4787 93 91 49 chrX 82507333 82508126 -94466014 - LTR12 LTR ERV1 0 826 1 700 199 88 59 chrX 82508181 82508487 -94465653 - pTR5 LTR ERV1 -1383 1055 741 * 1497 107 12 0 chrX 82508486 82508729 -94465411 - MER4-int LTR ERV1 -4568 2030 1785 577 165 8 16 chrX 82508731 82508858 -94465282 + MER4A-int LTR ERV1 3152 3277 -3321 1443 76 0 0 chrX 82508888 82509059 -94465081 - AluSq SINE Alu -142 171 1 1141 187 34 45 chrX 82509071 82509450 -94464690 + MER4A-int LTR ERV1 3304 3678 -2920 2343 108 14 36 chrX 82509450 82509865 -94464275 + MER4A-int LTR ERV1 3835 4240 -2358 625 120 10 0 chrX 82509862 82509962 -94464178 + MER4A-int LTR ERV1 6492 6592 -6 * 524 135 21 10 chrX 82509975 82510071 -94464069 + MER4A LTR ERV1 2 98 -566 1393 170 29 22 chrX 82510071 82510412 -94463728 + MER4A LTR ERV1 263 664 0 1239 215 31 62 chrX 82510898 82511317 -94462823 + L1MC1 LINE L1 5505 5910 -423 1469 174 234 11 chrX 82511318 82511503 -94462637 - MSTA LTR MaLR 0 428 286 180 0 0 0 chrX 82511503 82511523 -94462617 + (GA)n Simple_repeat Simple_repeat 1 20 0 1469 174 234 11 chrX 82511523 82511687 -94462453 - MSTA LTR MaLR -142 286 1 9158 143 9 39 chrX 82511687 82513314 -94460826 - MSTA-int LTR MaLR 0 1580 3 1330 188 129 26 chrX 82513316 82513656 -94460484 - THE1C LTR MaLR 0 375 1 863 130 28 51 chrX 82513656 82513833 -94460307 + L1MC1 LINE L1 6159 6331 -2 2541 60 0 0 chrX 82513840 82514141 -94459999 - AluY SINE Alu -10 301 1 1279 241 30 48 chrX 82514146 82514540 -94459600 + L1ME3 LINE L1 5691 6076 -86 2071 196 13 0 chrX 82514540 82514938 -94459202 - MER57A LTR ERV1 0 403 1 1279 241 30 48 chrX 82514938 82515017 -94459123 + L1ME3 LINE L1 6076 6155 -7 2224 56 0 4 chrX 82515665 82515933 -94458207 - AluY SINE Alu -7 304 38 21 0 0 0 chrX 82515933 82515954 -94458186 + AT_rich Low_complexity Low_complexity 1 21 0 1362 189 129 9 chrX 82515968 82516301 -94457839 + LOR1b LTR ERV1 1 373 -88 22 0 0 0 chrX 82516303 82516325 -94457815 + AT_rich Low_complexity Low_complexity 1 22 0 328 304 20 31 chrX 82516332 82516540 -94457600 + L1M4 LINE L1 5193 5399 -747 413 304 7 15 chrX 82516544 82516679 -94457461 + L1M3c LINE L1 3 136 -6005 4409 184 35 19 chrX 82516688 82518240 -94455900 + L1MB1 LINE L1 4598 6162 -6 1341 182 105 33 chrX 82518781 82519143 -94454997 + MLT1B LTR MaLR 1 388 -2 534 187 0 9 chrX 82519998 82520105 -94454035 + FRAM SINE Alu 69 174 -2 241 306 0 47 chrX 82520588 82520673 -94453467 - L2 LINE L2 0 3272 3192 356 280 72 113 chrX 82521037 82521355 -94452785 + MLT1I LTR MaLR 99 403 -6 2288 102 0 13 chrX 82521610 82521925 -94452215 - AluY SINE Alu 0 311 1 259 114 0 0 chrX 82521949 82521993 -94452147 + L1MA9 LINE L1 6229 6272 -40 30 45 0 0 chrX 82522069 82522113 -94452027 + AT_rich Low_complexity Low_complexity 1 44 0 258 272 33 128 chrX 82522146 82522263 -94451877 + MER5A DNA MER1_type 26 122 -67 2273 76 0 0 chrX 82522263 82522540 -94451600 - AluY SINE Alu -19 292 16 258 272 33 128 chrX 82522540 82522602 -94451538 + MER5A DNA MER1_type 122 188 -1 334 344 0 0 chrX 82523095 82523185 -94450955 - MIR3 SINE MIR -17 191 102 328 318 37 0 chrX 82523344 82523451 -94450689 - L2 LINE L2 -4 3268 3158 894 292 8 23 chrX 82523464 82523656 -94450484 - MIR SINE MIR 0 262 74 2418 189 31 4 chrX 82523656 82524111 -94450029 - MLT1C LTR MaLR 0 467 1 894 292 8 23 chrX 82524111 82524178 -94449962 - MIR SINE MIR -188 74 7 211 273 0 0 chrX 82524330 82524385 -94449755 - L2 LINE L2 -311 2961 2907 759 317 26 15 chrX 82524385 82524656 -94449484 + L2 LINE L2 2592 2865 -449 338 22 43 0 chrX 82524657 82524703 -94449437 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 1465 169 20 66 chrX 82524705 82525006 -94449134 - AluJo SINE Alu -2 310 24 678 294 127 3 chrX 82525036 82525335 -94448805 + L2 LINE L2 2934 3269 -44 488 257 0 0 chrX 82526386 82526529 -94447611 + L1ME1 LINE L1 6033 6334 0 2178 107 0 0 chrX 82526532 82526823 -94447317 - AluSg SINE Alu -19 291 1 1120 189 43 30 chrX 82527086 82527319 -94446821 + MER46A DNA MER2_type 1 236 0 215 61 30 0 chrX 82527321 82527354 -94446786 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2182 90 4 0 chrX 82527666 82527945 -94446195 + AluSc SINE Alu 1 280 -29 243 0 0 0 chrX 82527946 82527973 -94446167 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chrX 82527973 82527997 -94446143 + AT_rich Low_complexity Low_complexity 1 24 0 243 264 14 0 chrX 82529144 82529216 -94444924 - L1ME4a LINE L1 -81 6040 5968 332 255 53 0 chrX 82529224 82529318 -94444822 + Tigger7 DNA MER2_type 1 99 -606 378 75 0 0 chrX 82529356 82529409 -94444731 + MADE1 DNA Mariner 1 53 -27 * 474 179 0 0 chrX 82529406 82529484 -94444656 + Tigger7 DNA MER2_type 108 185 -520 * 630 102 31 47 chrX 82529477 82529605 -94444535 + Tigger7 DNA MER2_type 2214 2339 -148 240 231 39 0 chrX 82530376 82530454 -94443686 + L1ME3A LINE L1 5858 5938 -232 213 228 10 40 chrX 82530635 82530736 -94443404 + (TTA)n Simple_repeat Simple_repeat 2 99 0 280 210 23 29 chrX 82531222 82531351 -94442789 - L1MB3 LINE L1 -1 6179 6053 * 2461 158 19 6 chrX 82531319 82531799 -94442341 - L1MA4 LINE L1 -288 6012 5527 342 268 45 9 chrX 82531902 82532014 -94442126 - MIR SINE MIR -22 240 125 358 284 18 18 chrX 82532021 82532130 -94442010 - MER81 DNA DNA -5 109 1 1080 161 19 9 chrX 82532562 82532773 -94441367 + L1MA4 LINE L1 5873 6085 -215 275 177 0 0 chrX 82532775 82532837 -94441303 + L1MA4A LINE L1 6237 6298 -5 439 163 28 17 chrX 82532866 82533016 -94441124 - L1ME4a LINE L1 -331 5831 5685 * 580 262 69 61 chrX 82533012 82533483 -94440657 + L1ME LINE L1 5349 5823 -298 379 281 82 27 chrX 82533492 82533638 -94440502 - L2 LINE L2 -2 3311 3158 300 244 0 0 chrX 82534077 82534155 -94439985 + MER116 DNA Mariner 1 78 -2 506 259 22 22 chrX 82534691 82534830 -94439310 + MIR SINE MIR 110 248 -14 296 291 94 8 chrX 82535925 82536042 -94438098 + MIR SINE MIR 119 245 -17 817 142 7 0 chrX 82536071 82536219 -94437921 + Tigger5 DNA MER2_type 2062 2210 -113 1931 148 8 40 chrX 82536220 82536591 -94437549 - THE1C LTR MaLR -2 373 15 4651 104 5 10 chrX 82536600 82537271 -94436869 + PABL_B LTR ERV1 1 667 0 44096 136 16 20 chrX 82537272 82544424 -94429716 + PABL_B-int LTR ERV1 2 7122 0 2008 77 37 101 chrX 82544424 82544517 -94429623 + PABL_B LTR ERV1 1 98 -569 2143 121 3 9 chrX 82544517 82544832 -94429308 + AluSp SINE Alu 1 313 0 2008 77 37 101 chrX 82544832 82544969 -94429171 + PABL_B LTR ERV1 98 242 -425 270 0 0 0 chrX 82544969 82544999 -94429141 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2112 103 4 7 chrX 82545004 82545285 -94428855 - AluSp SINE Alu -27 286 7 2008 77 37 101 chrX 82545285 82545422 -94428718 + PABL_B LTR ERV1 246 351 -316 2144 135 0 0 chrX 82545455 82545751 -94428389 + AluSx SINE Alu 4 299 -13 3456 123 0 18 chrX 82545760 82546303 -94427837 + LTR8 LTR ERV1 159 691 0 14164 108 10 78 chrX 82546303 82548895 -94425245 + HUERS-P1 LTR ERV1 1 2416 -3847 304 299 94 8 chrX 82548921 82549038 -94425102 + MIR SINE MIR 119 245 -17 1315 168 0 50 chrX 82549063 82549214 -94424926 + Tigger5 DNA MER2_type 2058 2190 -133 2069 139 24 32 chrX 82549214 82549588 -94424552 - THE1C LTR MaLR 0 375 5 1315 168 0 50 chrX 82549588 82549716 -94424424 + Tigger5 DNA MER2_type 2190 2323 0 180 0 0 0 chrX 82549794 82549814 -94424326 + (TTA)n Simple_repeat Simple_repeat 2 21 0 537 178 0 0 chrX 82550258 82550348 -94423792 + U6 snRNA snRNA 1 90 -17 854 291 38 9 chrX 82550366 82550710 -94423430 + L1MC4a LINE L1 5512 5865 -1943 1413 208 51 25 chrX 82550824 82551180 -94422960 + MLT1A1 LTR MaLR 1 365 0 806 207 35 0 chrX 82551281 82551455 -94422685 + MER58A DNA MER1_type 45 224 0 418 184 48 32 chrX 82551721 82551846 -94422294 + L1M1 LINE L1 11 137 -7428 * 16519 192 52 20 chrX 82551840 82557606 -94416534 + L1PA13 LINE L1 1105 7489 -93 4559 133 8 13 chrX 82557606 82558378 -94415762 + L1MA2 LINE L1 5536 6304 0 25 0 0 0 chrX 82558378 82558403 -94415737 + AT_rich Low_complexity Low_complexity 1 25 0 299 326 0 0 chrX 82558613 82558699 -94415441 - MIR SINE MIR -8 254 169 * 1320 277 92 50 chrX 82558677 82559411 -94414729 + L2 LINE L2 2214 3271 -1 335 356 7 14 chrX 82559422 82559568 -94414572 - MIR SINE MIR -97 165 21 433 325 162 0 chrX 82560548 82560739 -94413401 + MIR SINE MIR 14 235 -27 437 341 46 29 chrX 82560811 82560984 -94413156 + MIR3 SINE MIR 31 206 -2 344 291 43 103 chrX 82561377 82561659 -94412481 - MLT1I LTR MaLR -77 332 68 228 317 114 24 chrX 82561773 82561896 -94412244 + L2 LINE L2 3139 3272 0 6702 128 9 1 chrX 82562533 82564408 -94409732 - L1PA8 LINE L1 -1 6486 4605 10525 190 7 22 chrX 82564412 82566488 -94407652 - L1PA8 LINE L1 -3154 3307 1202 2209 96 0 0 chrX 82566488 82566818 -94407322 - AluY SINE Alu 0 330 1 369 0 0 0 chrX 82566818 82566859 -94407281 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 10525 190 7 22 chrX 82566859 82568068 -94406072 - L1PA8 LINE L1 -5257 1204 3 206 32 32 0 chrX 82568167 82568198 -94405942 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 181 294 165 0 chrX 82568306 82568391 -94405749 - MIR SINE MIR -75 133 35 327 295 83 26 chrX 82568927 82569083 -94405057 + L2 LINE L2 1618 1782 -1532 330 302 38 25 chrX 82569098 82569257 -94404883 + L2 LINE L2 3126 3286 -27 599 225 14 14 chrX 82569332 82569470 -94404670 - MLT1H LTR MaLR 0 549 412 928 262 53 25 chrX 82569552 82569834 -94404306 - MLT1H LTR MaLR -258 291 2 21 0 0 0 chrX 82569926 82569947 -94404193 + AT_rich Low_complexity Low_complexity 1 21 0 229 303 52 59 chrX 82570139 82570410 -94403730 + L1 LINE L1 3899 4167 -1979 2246 126 6 0 chrX 82570448 82570781 -94403359 - L1PBa LINE L1 -5129 1734 1400 1876 127 28 0 chrX 82570812 82571103 -94403037 - L1PBa LINE L1 -5700 1163 865 * 6493 112 93 3 chrX 82571095 82572301 -94401839 + L1PBa LINE L1 1745 3060 -3802 6128 53 16 3 chrX 82572301 82573071 -94401069 + LTR17 LTR ERV1 1 780 0 441 73 0 0 chrX 82573071 82573126 -94401014 + HERV17 LTR ERV1 1 55 -8571 1163 240 8 0 chrX 82573126 82573372 -94400768 + MLT1A1 LTR MaLR 118 365 0 222 300 0 17 chrX 82573765 82573825 -94400315 + L2 LINE L2 3205 3263 -9 23 97 0 0 chrX 82574149 82574221 -94399919 + AT_rich Low_complexity Low_complexity 1 72 0 207 0 0 0 chrX 82575951 82575974 -94398166 + (GA)n Simple_repeat Simple_repeat 2 24 0 186 71 0 0 chrX 82576524 82576552 -94397588 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 756 184 41 41 chrX 82576573 82576720 -94397420 + MER20 DNA MER1_type 29 175 -44 572 293 44 24 chrX 82576912 82577117 -94397023 - MER63A DNA MER1_type 0 210 2 319 198 0 0 chrX 82577487 82577566 -94396574 + L1P3 LINE L1 10 367 -6094 899 292 8 23 chrX 82627569 82627761 -94346379 - MIR SINE MIR 0 262 74 2433 189 31 4 chrX 82627761 82628216 -94345924 - MLT1C LTR MaLR 0 467 1 899 292 8 23 chrX 82628216 82628283 -94345857 - MIR SINE MIR -188 74 7 209 273 0 0 chrX 82628435 82628490 -94345650 - L2 LINE L2 -311 2961 2907 756 317 26 15 chrX 82628490 82628761 -94345379 + L2 LINE L2 2592 2865 -449 338 22 43 0 chrX 82628762 82628808 -94345332 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 1404 166 20 70 chrX 82628810 82629112 -94345028 - AluJo SINE Alu -2 310 24 679 297 123 3 chrX 82629142 82629442 -94344698 + L2 LINE L2 2934 3269 -44 521 256 1 4 chrX 82630489 82630636 -94343504 + L1ME1 LINE L1 6033 6334 0 2172 107 0 0 chrX 82630639 82630930 -94343210 - AluSg SINE Alu -19 291 1 1134 189 43 30 chrX 82631193 82631426 -94342714 + MER46A DNA MER2_type 1 236 0 215 61 30 0 chrX 82631428 82631461 -94342679 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2180 90 4 0 chrX 82631773 82632052 -94342088 + AluSc SINE Alu 1 280 -29 243 0 0 0 chrX 82632053 82632080 -94342060 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chrX 82632080 82632104 -94342036 + AT_rich Low_complexity Low_complexity 1 24 0 267 273 35 0 chrX 82633229 82633330 -94340810 - L1ME4a LINE L1 -41 6040 1198 366 255 53 0 chrX 82633331 82633425 -94340715 + Tigger7 DNA MER2_type 1 99 -634 396 75 0 0 chrX 82633463 82633516 -94340624 + MADE1 DNA Mariner 1 53 -27 * 503 179 0 0 chrX 82633513 82633591 -94340549 + Tigger7 DNA MER2_type 108 185 -548 * 670 104 30 52 chrX 82633584 82633719 -94340421 + Tigger7 DNA MER2_type 2214 2345 -142 260 231 39 0 chrX 82634483 82634561 -94339579 + L1ME3A LINE L1 5858 5938 -232 213 228 10 40 chrX 82634742 82634843 -94339297 + (TTA)n Simple_repeat Simple_repeat 2 99 0 21 0 0 0 chrX 82635316 82635337 -94338803 + AT_rich Low_complexity Low_complexity 1 21 0 2274 152 11 19 chrX 82635448 82635822 -94338318 - MLT2A2 LTR ERVL -81 372 2 3204 225 26 62 chrX 82635824 82636358 -94337782 + L1 LINE L1 2338 2813 -3333 760 169 0 0 chrX 82636358 82636494 -94337646 + L1MA2 LINE L1 6169 6304 0 3204 225 26 62 chrX 82636494 82637069 -94337071 + L1 LINE L1 2813 3407 -2739 2480 130 6 0 chrX 82637071 82637433 -94336707 - THE1B LTR MaLR 0 364 1 9275 109 12 133 chrX 82637435 82638548 -94335592 - THE1B-int LTR MaLR -2 1578 560 1434 77 0 0 chrX 82638548 82638730 -94335410 - AluY SINE Alu -6 305 124 9275 109 12 133 chrX 82638730 82639229 -94334911 - THE1B-int LTR MaLR -1020 560 2 2303 155 3 11 chrX 82639230 82639597 -94334543 - THE1B LTR MaLR 0 364 1 6758 208 35 26 chrX 82639597 82641171 -94332969 + L1PA16 LINE L1 3405 4995 -1171 2028 147 0 3 chrX 82641171 82641478 -94332662 + AluSx SINE Alu 4 309 -3 6758 208 35 26 chrX 82641478 82642217 -94331923 + L1PA16 LINE L1 4995 5726 -440 493 154 0 11 chrX 82642236 82642327 -94331813 + L1 LINE L1 4638 4727 -1419 1606 182 20 0 chrX 82642342 82642638 -94331502 + L1PA16 LINE L1 5746 6047 -119 527 93 12 35 chrX 82642644 82642730 -94331410 + MER4A LTR ERV1 15 98 -566 1607 145 17 41 chrX 82642730 82643082 -94331058 + MER4A LTR ERV1 263 664 0 1414 103 125 0 chrX 82643084 82643308 -94330832 + MER4A-int LTR ERV1 1 252 -6346 182 360 12 0 chrX 82643321 82643407 -94330733 - L2 LINE L2 -769 2545 2459 24 0 0 0 chrX 82644171 82644195 -94329945 + AT_rich Low_complexity Low_complexity 1 24 0 217 297 72 0 chrX 82644297 82644368 -94329772 - MIR SINE MIR -65 143 75 2088 112 0 7 chrX 82644466 82644783 -94329357 - AluSp SINE Alu 0 315 1 2382 144 2 10 chrX 82644784 82645181 -94328959 - L1PA11 LINE L1 -8 6166 5773 463 357 31 34 chrX 82645357 82645648 -94328492 - L2 LINE L2 -1228 2086 1797 3690 159 38 8 chrX 82645665 82646370 -94327770 - L1PA16 LINE L1 -9 6157 5432 2293 80 10 3 chrX 82646372 82646673 -94327467 - AluSq SINE Alu -10 303 1 966 35 0 0 chrX 82646686 82646801 -94327339 - L1PA3 LINE L1 0 6155 6041 1831 176 40 3 chrX 82646809 82646938 -94327202 - L1PA13 LINE L1 -5 6158 6035 180 0 0 0 chrX 82646938 82646958 -94327182 + (TG)n Simple_repeat Simple_repeat 1 20 0 1831 176 40 3 chrX 82646958 82647204 -94326936 - L1PA13 LINE L1 -128 6035 5769 7643 26 0 0 chrX 82647236 82648187 -94325953 - L1PA2 LINE L1 -3 6152 5202 43471 40 1 1 chrX 82648287 82653597 -94320543 - L1P LINE L1 -841 5305 1 3157 139 3 28 chrX 82653598 82654069 -94320071 - L1PA13 LINE L1 -379 5782 5327 2420 93 3 0 chrX 82654069 82654371 -94319769 - AluSp SINE Alu -10 303 1 3157 139 3 28 chrX 82654371 82654504 -94319636 - L1PA13 LINE L1 -834 5327 5192 708 206 7 0 chrX 82654513 82654668 -94319472 - L1P LINE L1 -2599 3547 3392 585 86 11 0 chrX 82654665 82654758 -94319382 - L1P4 LINE L1 -736 5430 5337 * 225 65 0 0 chrX 82654971 82655002 -94319138 + (CA)n Simple_repeat Simple_repeat 2 32 0 2114 166 36 11 chrX 82657524 82657969 -94316171 - L1MA4 LINE L1 -5 6295 5840 3313 171 10 6 chrX 82658090 82659028 -94315112 + L1MA4 LINE L1 4777 5720 -580 225 0 0 0 chrX 82660273 82660298 -94313842 + (CA)n Simple_repeat Simple_repeat 2 26 0 187 245 43 128 chrX 82660883 82661071 -94313069 - L2 LINE L2 -1504 1810 1639 * 269 220 34 17 chrX 82661066 82661125 -94313015 + MER5A DNA MER1_type 61 120 -69 202 215 25 0 chrX 82661136 82661215 -94312925 + (TA)n Simple_repeat Simple_repeat 1 81 0 615 247 118 57 chrX 82661234 82661497 -94312643 + L2 LINE L2 3035 3313 0 1148 161 19 9 chrX 82662144 82662355 -94311785 + L1MA4 LINE L1 5873 6085 -215 286 177 0 0 chrX 82662357 82662419 -94311721 + L1MA4A LINE L1 6237 6298 -5 458 174 31 31 chrX 82662448 82662597 -94311543 - L1ME2 LINE L1 -333 5831 5683 * 680 253 73 65 chrX 82662594 82663065 -94311075 + L1ME LINE L1 5349 5823 -298 386 281 82 27 chrX 82663074 82663220 -94310920 - L2 LINE L2 -2 3311 3158 306 244 0 0 chrX 82663659 82663737 -94310403 + MER116 DNA Mariner 1 78 -2 509 259 22 22 chrX 82664273 82664412 -94309728 + MIR SINE MIR 110 248 -14 304 291 94 8 chrX 82665507 82665624 -94308516 + MIR SINE MIR 119 245 -17 863 142 7 0 chrX 82665653 82665801 -94308339 + Tigger5 DNA MER2_type 2062 2210 -113 2062 148 8 40 chrX 82665802 82666173 -94307967 - THE1C LTR MaLR -2 373 15 4657 104 5 10 chrX 82666182 82666853 -94307287 + PABL_B LTR ERV1 1 667 0 46656 136 16 20 chrX 82666854 82668174 -94305966 + PABL_B-int LTR ERV1 2 1326 -5796 229 111 0 0 chrX 82668174 82668210 -94305930 - U2 snRNA snRNA -152 36 1 46656 136 16 20 chrX 82668210 82674006 -94300134 + PABL_B-int LTR ERV1 1326 7122 0 1518 68 55 59 chrX 82674006 82674101 -94300039 + PABL_B LTR ERV1 1 95 -572 2122 118 3 10 chrX 82674101 82674414 -94299726 + AluSp SINE Alu 3 313 0 1518 68 55 59 chrX 82674414 82674555 -94299585 + PABL_B LTR ERV1 95 236 -431 2053 108 4 7 chrX 82674588 82674867 -94299273 - AluSp SINE Alu -29 284 7 891 102 44 7 chrX 82674867 82675004 -94299136 + PABL_B LTR ERV1 210 351 -316 2108 138 0 0 chrX 82675037 82675333 -94298807 + AluSx SINE Alu 4 299 -13 3649 123 0 18 chrX 82675342 82675885 -94298255 + LTR8 LTR ERV1 159 691 0 15038 108 10 78 chrX 82675885 82678476 -94295664 + HUERS-P1 LTR ERV1 1 2416 -3847 308 299 94 8 chrX 82678502 82678619 -94295521 + MIR SINE MIR 119 245 -17 1397 168 0 50 chrX 82678644 82678795 -94295345 + Tigger5 DNA MER2_type 2058 2190 -133 2066 139 24 32 chrX 82678795 82679169 -94294971 - THE1C LTR MaLR 0 375 5 1397 168 0 50 chrX 82679169 82679297 -94294843 + Tigger5 DNA MER2_type 2190 2323 0 180 0 0 0 chrX 82679375 82679395 -94294745 + (TTA)n Simple_repeat Simple_repeat 2 21 0 569 178 0 0 chrX 82679839 82679929 -94294211 + U6 snRNA snRNA 1 90 -17 951 291 38 9 chrX 82679947 82680291 -94293849 + L1MC4a LINE L1 5512 5865 -1943 1425 208 51 25 chrX 82680405 82680761 -94293379 + MLT1A1 LTR MaLR 1 365 0 867 207 35 0 chrX 82680862 82681036 -94293104 + MER58A DNA MER1_type 45 224 0 454 189 47 31 chrX 82681300 82681427 -94292713 + L1M1 LINE L1 9 137 -7428 * 16435 193 53 20 chrX 82681419 82687188 -94286952 + L1PA13 LINE L1 1103 7489 -93 4559 133 8 13 chrX 82687188 82687960 -94286180 + L1MA2 LINE L1 5536 6304 0 25 0 0 0 chrX 82687960 82687985 -94286155 + AT_rich Low_complexity Low_complexity 1 25 0 299 326 0 0 chrX 82688195 82688281 -94285859 - MIR SINE MIR -8 254 169 * 1320 277 92 50 chrX 82688259 82688993 -94285147 + L2 LINE L2 2214 3271 -1 335 356 7 14 chrX 82689004 82689150 -94284990 - MIR SINE MIR -97 165 21 433 325 162 0 chrX 82690113 82690304 -94283836 + MIR SINE MIR 14 235 -27 437 341 46 29 chrX 82690376 82690549 -94283591 + MIR3 SINE MIR 31 206 -2 344 291 43 103 chrX 82690942 82691224 -94282916 - MLT1I LTR MaLR -77 332 68 228 317 114 24 chrX 82691338 82691461 -94282679 + L2 LINE L2 3139 3272 0 6702 128 9 1 chrX 82692098 82693973 -94280167 - L1PA8 LINE L1 -1 6486 4605 10525 190 7 22 chrX 82693977 82696053 -94278087 - L1PA8 LINE L1 -3154 3307 1202 2209 96 0 0 chrX 82696053 82696383 -94277757 - AluY SINE Alu 0 330 1 369 0 0 0 chrX 82696383 82696424 -94277716 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 10525 190 7 22 chrX 82696424 82697633 -94276507 - L1PA8 LINE L1 -5257 1204 3 206 32 32 0 chrX 82697732 82697763 -94276377 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 181 294 165 0 chrX 82697871 82697956 -94276184 - MIR SINE MIR -75 133 35 327 295 83 26 chrX 82698492 82698648 -94275492 + L2 LINE L2 1618 1782 -1532 330 302 38 25 chrX 82698663 82698822 -94275318 + L2 LINE L2 3126 3286 -27 599 225 14 14 chrX 82698897 82699035 -94275105 - MLT1H LTR MaLR 0 549 412 928 262 53 25 chrX 82699117 82699399 -94274741 - MLT1H LTR MaLR -258 291 2 21 0 0 0 chrX 82699491 82699512 -94274628 + AT_rich Low_complexity Low_complexity 1 21 0 229 303 52 59 chrX 82699704 82699975 -94274165 + L1 LINE L1 3899 4167 -1979 2246 126 6 0 chrX 82700013 82700346 -94273794 - L1PBa LINE L1 -5129 1734 1400 1876 127 28 0 chrX 82700377 82700668 -94273472 - L1PBa LINE L1 -5700 1163 865 * 6480 111 93 3 chrX 82700660 82701865 -94272275 + L1PBa LINE L1 1745 3060 -3802 6128 53 16 3 chrX 82701865 82702635 -94271505 + LTR17 LTR ERV1 1 780 0 441 73 0 0 chrX 82702635 82702690 -94271450 + HERV17 LTR ERV1 1 55 -8571 1163 240 8 0 chrX 82702690 82702936 -94271204 + MLT1A1 LTR MaLR 118 365 0 222 300 0 17 chrX 82703329 82703389 -94270751 + L2 LINE L2 3205 3263 -9 23 97 0 0 chrX 82703713 82703785 -94270355 + AT_rich Low_complexity Low_complexity 1 72 0 207 0 0 0 chrX 82705515 82705538 -94268602 + (GA)n Simple_repeat Simple_repeat 2 24 0 186 71 0 0 chrX 82706088 82706116 -94268024 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 756 184 41 41 chrX 82706137 82706284 -94267856 + MER20 DNA MER1_type 29 175 -44 572 293 44 24 chrX 82706476 82706681 -94267459 - MER63A DNA MER1_type 0 210 2 6623 228 25 54 chrX 82707059 82709907 -94264233 + L1P3 LINE L1 10 2794 -3667 843 199 46 51 chrX 82709908 82710104 -94264036 - pTR5 LTR ERV1 -1500 938 744 9288 154 30 27 chrX 82710104 82711322 -94262818 + L1P LINE L1 3622 4848 -1613 2311 110 0 3 chrX 82711322 82711632 -94262508 + AluSq SINE Alu 5 313 0 9288 154 30 27 chrX 82711632 82712143 -94261997 + L1P LINE L1 4848 5356 -1105 385 220 13 53 chrX 82712377 82712527 -94261613 - MER104 DNA Tc2 -1 179 36 470 208 153 14 chrX 82712570 82712714 -94261426 + MIR SINE MIR 80 243 -19 516 239 170 11 chrX 82712929 82713117 -94261023 + MIR SINE MIR 45 262 0 * 789 326 84 26 chrX 82713105 82713534 -94260606 - L2 LINE L2 -13 3300 2847 23 0 0 0 chrX 82713842 82713865 -94260275 + AT_rich Low_complexity Low_complexity 1 23 0 1110 182 100 62 chrX 82714419 82714710 -94259430 - AluJo SINE Alu 0 302 1 495 194 10 0 chrX 82714722 82714820 -94259320 - L1MA4A LINE L1 -24 6279 6181 2373 188 76 8 chrX 82714826 82715327 -94258813 - L1MA4A LINE L1 -193 6110 5576 483 303 11 22 chrX 82716127 82716312 -94257828 + L1MC4a LINE L1 5689 5871 -1937 25 0 0 0 chrX 82716313 82716338 -94257802 + AT_rich Low_complexity Low_complexity 1 25 0 2990 231 38 50 chrX 82716692 82716779 -94257361 + L1PA15-16 LINE L1 2 89 -6760 2167 88 14 10 chrX 82716779 82717076 -94257064 + AluY SINE Alu 1 298 -13 2990 231 38 50 chrX 82717076 82717697 -94256443 + L1PA15-16 LINE L1 89 703 -6146 2650 78 0 0 chrX 82717697 82718041 -94256099 - LTR14A LTR ERVK 0 344 1 2990 231 38 50 chrX 82718041 82718072 -94256068 + L1PA15-16 LINE L1 703 733 -6116 3959 229 130 7 chrX 82718570 82719939 -94254201 + L1PA15-16 LINE L1 1427 3033 -3816 2936 117 44 2 chrX 82719950 82720385 -94253755 - MLT2A2 LTR ERVL 0 453 1 41938 95 6 3 chrX 82720385 82726024 -94248116 - HERVL-A2 LTR ERVL 0 5654 1 295 119 0 0 chrX 82726024 82726066 -94248074 - MLT2A2 LTR ERVL 0 453 412 288 0 0 0 chrX 82726066 82726098 -94248042 + (CA)n Simple_repeat Simple_repeat 2 33 0 1966 161 103 3 chrX 82726786 82727164 -94246976 + MLT2C2 LTR ERVL 1 416 -48 669 49 29 0 chrX 82727166 82727268 -94246872 + (TAGA)n Simple_repeat Simple_repeat 4 108 0 249 33 0 0 chrX 82727290 82727320 -94246820 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 264 295 39 13 chrX 82727385 82727463 -94246677 - L2 LINE L2 -5 3267 3188 * 306 261 126 36 chrX 82727460 82727571 -94246569 + L2 LINE L2 3193 3313 0 4663 95 55 56 chrX 82727842 82728890 -94245250 + MER11A LTR ERVK 1 1266 0 22 0 0 0 chrX 82728905 82728927 -94245213 + AT_rich Low_complexity Low_complexity 1 22 0 347 236 81 32 chrX 82730307 82730430 -94243710 + L1ME LINE L1 5497 5625 -496 1170 216 52 4 chrX 82731874 82732105 -94242035 + MLT1H1 LTR MaLR 254 495 -60 232 239 0 0 chrX 82732226 82732272 -94241868 + CT-rich Low_complexity Low_complexity 2 47 0 23 33 0 0 chrX 82732316 82732346 -94241794 + AT_rich Low_complexity Low_complexity 1 30 0 359 244 16 63 chrX 82732493 82732620 -94241520 - MER103 DNA DNA -45 121 1 2558 51 0 22 chrX 82732817 82733130 -94241010 - AluY SINE Alu -3 308 3 21 0 0 0 chrX 82733141 82733162 -94240978 + AT_rich Low_complexity Low_complexity 1 21 0 6011 149 40 48 chrX 82733177 82734418 -94239722 + Tigger3b DNA MER2_type 1 1231 0 669 215 45 25 chrX 82735233 82735371 -94238769 + MER3 DNA MER1_type 1 146 -63 1513 214 7 3 chrX 82735371 82735674 -94238466 - AluJb SINE Alu -8 304 1 669 215 45 25 chrX 82735674 82735735 -94238405 + MER3 DNA MER1_type 146 204 -5 230 330 43 11 chrX 82736273 82736367 -94237773 + L2 LINE L2 1933 2029 -1285 2076 117 11 0 chrX 82736382 82736726 -94237414 - AluSq SINE Alu 0 347 1 1281 155 5 0 chrX 82736731 82736950 -94237190 - L1MC1 LINE L1 -11 6322 6103 4193 179 56 20 chrX 82737479 82737887 -94236253 - L1MC1 LINE L1 -228 6105 5713 858 150 39 6 chrX 82737887 82738067 -94236073 - L1MA4A LINE L1 0 6303 6118 4193 179 56 20 chrX 82738067 82738766 -94235374 - L1MC1 LINE L1 -620 5713 4935 2180 66 44 4 chrX 82738766 82739074 -94235066 - AluY SINE Alu 0 319 1 4193 179 56 20 chrX 82739074 82739383 -94234757 - L1MC1 LINE L1 -1398 4935 4639 1176 180 26 0 chrX 82739406 82739634 -94234506 + L1PA16 LINE L1 5933 6166 0 426 288 86 15 chrX 82739635 82739994 -94234146 + L1P3 LINE L1 5386 5785 -387 195 42 0 0 chrX 82740403 82740427 -94233713 + (TC)n Simple_repeat Simple_repeat 1 24 0 234 0 0 0 chrX 82740427 82740453 -94233687 + (TG)n Simple_repeat Simple_repeat 2 27 0 344 276 88 93 chrX 82740547 82740978 -94233162 - MLT1H LTR MaLR -17 532 104 5418 183 21 17 chrX 82741056 82743055 -94231085 - L1PA16 LINE L1 -1 6165 4125 216 245 0 20 chrX 82743450 82743499 -94230641 - MER5A DNA MER1_type -3 186 139 548 209 0 0 chrX 82743526 82743617 -94230523 - FLAM_A SINE Alu -46 96 6 228 318 112 19 chrX 82743634 82743741 -94230399 + MER5A DNA MER1_type 45 167 -17 612 253 75 11 chrX 82744141 82744327 -94229813 - MIR SINE MIR -50 212 15 1231 135 47 9 chrX 82746101 82746316 -94227824 - L1PA11 LINE L1 -4 6170 5948 228 86 0 0 chrX 82746584 82746619 -94227521 + L1M4 LINE L1 5406 5440 -734 * 3651 191 76 64 chrX 82746612 82747620 -94226520 + L1MC2 LINE L1 5246 6268 -76 2322 67 0 54 chrX 82747620 82747935 -94226205 - AluY SINE Alu -13 298 1 3651 191 76 64 chrX 82747935 82747991 -94226149 + L1MC2 LINE L1 6268 6322 -22 246 348 67 22 chrX 82748011 82748146 -94225994 + MIR3 SINE MIR 11 151 -57 8543 170 29 17 chrX 82748150 82751072 -94223068 + L1M1 LINE L1 2645 5610 -1955 11387 186 42 6 chrX 82751087 82755421 -94218719 + L1PBa LINE L1 1119 5605 -1257 1706 170 50 19 chrX 82755421 82755785 -94218355 - THE1C LTR MaLR 0 375 1 2680 162 8 23 chrX 82755785 82756266 -94217874 - THE1C-int LTR MaLR 0 1580 1107 371 317 70 21 chrX 82756288 82756474 -94217666 + L2 LINE L2 3119 3313 0 * 476 308 6 24 chrX 82756450 82756619 -94217521 - MIR SINE MIR -49 213 48 272 175 1 53 chrX 82756895 82757232 -94216908 + AluJo SINE Alu 23 318 0 415 259 54 0 chrX 82757232 82757344 -94216796 - MIR SINE MIR -94 168 51 203 290 67 101 chrX 82757371 82757609 -94216531 - L2 LINE L2 -1409 1905 1676 21 0 0 0 chrX 82758708 82758729 -94215411 + AT_rich Low_complexity Low_complexity 1 21 0 378 234 95 51 chrX 82760141 82760278 -94213862 - MIR SINE MIR -16 246 104 22 35 0 0 chrX 82761330 82761359 -94212781 + AT_rich Low_complexity Low_complexity 1 29 0 484 283 7 0 chrX 82761561 82761699 -94212441 + MIR SINE MIR 124 262 0 25 31 0 0 chrX 82761826 82761858 -94212282 + AT_rich Low_complexity Low_complexity 1 32 0 18288 195 36 13 chrX 82762278 82767046 -94207094 + L1M1 LINE L1 15 4898 -2667 3772 133 18 5 chrX 82767047 82767670 -94206470 + L1MA1 LINE L1 5672 6302 0 2108 134 36 25 chrX 82768753 82769111 -94205029 + THE1B LTR MaLR 3 364 0 25652 34 14 6 chrX 82770507 82774478 -94199662 + L1PA4 LINE L1 2150 6154 -1 32 75 0 0 chrX 82774515 82774582 -94199558 + AT_rich Low_complexity Low_complexity 1 67 0 224 284 40 20 chrX 82774704 82774852 -94199288 + (CATATA)n Simple_repeat Simple_repeat 6 156 0 388 330 97 4 chrX 82774964 82775243 -94198897 - L1ME LINE L1 -321 5800 5496 25 51 0 0 chrX 82775284 82775323 -94198817 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chrX 82775539 82775570 -94198570 + AT_rich Low_complexity Low_complexity 1 31 0 1570 232 119 44 chrX 82775747 82776983 -94197157 - L1ME3 LINE L1 -32 6203 4947 2091 258 45 11 chrX 82776995 82777688 -94196452 - L1ME3 LINE L1 -4162 2234 1519 15554 166 7 4 chrX 82777795 82781418 -94192722 - L1PA11 LINE L1 -2 6172 2537 2913 146 11 7 chrX 82781419 82782140 -94192000 + LTR25 LTR ERV1 5 794 0 355 179 12 71 chrX 82782140 82782224 -94191916 + HUERS-P3b LTR ERV1 13 91 -6905 13977 197 28 25 chrX 82782228 82785818 -94188322 + HUERS-P3b LTR ERV1 259 3959 -3037 5907 143 55 93 chrX 82785818 82786077 -94188063 + HUERS-P3b LTR ERV1 4503 4770 -2234 2399 83 3 0 chrX 82786077 82786379 -94187761 - AluSp SINE Alu -10 303 1 5907 143 55 93 chrX 82786379 82787704 -94186436 + HUERS-P3b LTR ERV1 4770 6034 -970 2410 81 7 3 chrX 82787721 82788031 -94186109 - AluY SINE Alu 0 311 1 2790 207 15 27 chrX 82788032 82788708 -94185432 + HUERS-P3b LTR ERV1 6327 6994 -2 3691 123 8 55 chrX 82788714 82789338 -94184802 + LTR25 LTR ERV1 1 595 -199 3381 253 57 19 chrX 82789340 82790283 -94183857 - L1PA12 LINE L1 -6597 984 6 1842 272 49 35 chrX 82790299 82791166 -94182974 - L1ME3 LINE L1 -4993 1277 485 781 301 96 16 chrX 82791169 82791491 -94182649 - L1ME3 LINE L1 -6026 370 23 534 279 0 36 chrX 82791526 82791691 -94182449 - MIR SINE MIR -72 190 32 1044 259 127 23 chrX 82792287 82792719 -94181421 + MLT1J LTR MaLR 1 477 -34 5162 101 7 55 chrX 82792774 82793818 -94180322 - L1PB1 LINE L1 0 6151 5144 2775 169 24 0 chrX 82794413 82794947 -94179193 - L1MA4 LINE L1 -7 6293 5747 356 293 113 0 chrX 82795303 82795409 -94178731 - MIR SINE MIR -73 189 72 378 351 11 48 chrX 82795469 82795657 -94178483 - MER5A DNA MER1_type -7 182 2 22 0 0 89 chrX 82795670 82795715 -94178425 + AT_rich Low_complexity Low_complexity 1 41 0 4027 150 28 3 chrX 82795754 82796440 -94177700 - L1PA15 LINE L1 0 6165 5463 310 119 4 13 chrX 82796448 82796507 -94177633 + THE1C LTR MaLR 246 313 -53 305 104 0 0 chrX 82796522 82796570 -94177570 - L1PA15 LINE L1 -728 5446 5399 1627 170 58 30 chrX 82796575 82796939 -94177201 - THE1C LTR MaLR 0 375 2 8425 150 20 41 chrX 82796940 82798423 -94175717 - THE1C-int LTR MaLR 0 1580 129 2462 230 26 1 chrX 82798436 82799097 -94175043 + L1P LINE L1 2718 3394 -2752 362 335 37 25 chrX 82799167 82799328 -94174812 - L2 LINE L2 -584 2730 2568 292 316 124 42 chrX 82799426 82799619 -94174521 - MER63A DNA MER1_type -1 209 1 25 31 0 0 chrX 82799759 82799791 -94174349 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chrX 82799850 82799875 -94174265 + AT_rich Low_complexity Low_complexity 1 25 0 956 350 34 37 chrX 82800888 82801556 -94172584 + L1PA13 LINE L1 788 1453 -6121 355 293 0 0 chrX 82801613 82801712 -94172428 + L1PA13 LINE L1 2085 2183 -5398 4463 262 14 23 chrX 82801952 82804037 -94170103 + L1PA13 LINE L1 2182 4259 -3325 2204 174 31 15 chrX 82804036 82804521 -94169619 + L1PA16 LINE L1 5644 6159 -6 * 511 340 53 0 chrX 82804996 82805202 -94168938 + MIR SINE MIR 46 262 0 496 319 179 5 chrX 82805340 82805547 -94168593 + MIR SINE MIR 4 246 -16 3212 136 0 4 chrX 82807221 82807720 -94166420 - L1PA15 LINE L1 -5 6160 5664 673 220 0 0 chrX 82807744 82807862 -94166278 + FLAM_A SINE Alu 4 121 -12 2177 238 47 2 chrX 82807882 82808348 -94165792 + L1M2 LINE L1 1 487 -6362 6777 211 13 36 chrX 82808419 82809656 -94164484 + L1M2 LINE L1 680 1880 -4969 870 149 0 26 chrX 82809656 82809810 -94164330 + L1PB4 LINE L1 6004 6153 -3 6777 211 13 36 chrX 82809810 82810001 -94164139 + L1M2 LINE L1 1880 2074 -4775 4025 142 14 13 chrX 82810002 82810698 -94163442 + L1MA4A LINE L1 5592 6288 -15 707 251 62 14 chrX 82810744 82811019 -94163121 + L1MEc LINE L1 1042 1329 -5067 1415 221 20 57 chrX 82811030 82811433 -94162707 - MLT1B LTR MaLR -2 388 1 2360 283 29 21 chrX 82811452 82812560 -94161580 + L1MEc LINE L1 1353 2469 -3927 348 160 0 53 chrX 82812583 82812658 -94161482 - AluJ/FRAM SINE Alu -1 301 231 336 208 75 0 chrX 82812665 82812771 -94161369 - L1M4 LINE L1 -1410 4736 4623 * 889 197 70 66 chrX 82812765 82813009 -94161131 - L1PA16 LINE L1 0 6166 5922 23 0 0 0 chrX 82813010 82813033 -94161107 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 82814169 82814204 -94159936 + AT_rich Low_complexity Low_complexity 1 35 0 2907 230 10 15 chrX 82814326 82815057 -94159083 - L1PA15 LINE L1 -2078 4068 3342 * 4068 204 4 40 chrX 82815056 82816892 -94157248 + L1PA15 LINE L1 4075 5736 -430 3736 210 11 0 chrX 82816889 82817718 -94156422 + L1PB3 LINE L1 3850 4687 -1459 * 383 93 0 0 chrX 82817721 82817775 -94156365 - MLT2A2 LTR ERVL -1 452 399 455 116 0 0 chrX 82817785 82817854 -94156286 - L1 LINE L1 -1963 4183 4115 243 152 0 0 chrX 82817873 82817919 -94156221 - LTR66 LTR ERVL -171 439 394 228 86 0 0 chrX 82817919 82817954 -94156186 + (CA)n Simple_repeat Simple_repeat 2 36 0 2285 146 32 24 chrX 82817975 82818483 -94155657 - MLT2A2 LTR ERVL -40 514 2 5222 163 25 21 chrX 82818485 82819118 -94155022 + L1PB3 LINE L1 4685 5314 -840 2330 75 14 0 chrX 82819118 82819413 -94154727 + AluY SINE Alu 1 299 -12 5222 163 25 21 chrX 82819413 82820232 -94153908 + L1PB3 LINE L1 5314 6152 -2 34 42 0 0 chrX 82820233 82820281 -94153859 + AT_rich Low_complexity Low_complexity 1 48 0 2163 131 34 26 chrX 82820282 82820663 -94153477 + L1PA15 LINE L1 5776 6159 -6 2232 244 51 39 chrX 82820663 82820759 -94153381 + L1ME1 LINE L1 5389 5482 -684 1782 210 66 52 chrX 82820759 82821303 -94152837 + MLT2B3 LTR ERVL 3 554 0 2232 244 51 39 chrX 82821303 82821927 -94152213 + L1ME1 LINE L1 5482 6118 -48 414 224 27 27 chrX 82821824 82821971 -94152169 + L1MA10 LINE L1 6174 6320 -14 * 1009 194 16 41 chrX 82823352 82823594 -94150546 + MER106A DNA MER1_type 1 236 0 1327 209 32 44 chrX 82825095 82825411 -94148729 + AluJo SINE Alu 1 312 0 184 339 116 27 chrX 82825805 82825856 -94148284 + MIR SINE MIR 98 143 -119 2985 222 17 5 chrX 82825856 82826501 -94147639 - MER82 DNA MER2_type 0 653 1 184 339 116 27 chrX 82826501 82826561 -94147579 + MIR SINE MIR 143 219 -43 276 146 0 0 chrX 82828269 82828317 -94145823 + MADE1 DNA Mariner 1 48 -32 * 680 174 67 34 chrX 82828302 82828364 -94145776 - MLT1B LTR MaLR -234 156 98 1479 216 27 3 chrX 82828364 82828665 -94145475 - AluJo SINE Alu -4 308 1 680 174 67 34 chrX 82828665 82828751 -94145389 - MLT1B LTR MaLR -292 98 3 2599 249 37 23 chrX 82828774 82829642 -94144498 + L1ME2 LINE L1 2305 3184 -2962 1620 159 3 10 chrX 82829672 82829967 -94144173 + L1MA4A LINE L1 5823 6115 -188 472 200 11 0 chrX 82829972 82830067 -94144073 + L1MA4A LINE L1 6183 6278 -25 266 273 0 0 chrX 82830161 82830227 -94143913 + L1ME2 LINE L1 4487 4552 -1594 1333 229 74 3 chrX 82830254 82830634 -94143506 + L1ME2 LINE L1 4533 4939 -1207 1526 171 3 38 chrX 82830656 82830948 -94143192 + AluJo SINE Alu 12 293 -19 1348 231 39 60 chrX 82830970 82831490 -94142650 + L1ME2 LINE L1 5625 6133 -31 482 203 25 17 chrX 82832103 82832221 -94141919 - L1MC/D LINE L1 -616 5743 5625 947 188 0 0 chrX 82832243 82832392 -94141748 - AluJb SINE Alu -19 293 145 4976 129 66 47 chrX 82832393 82833365 -94140775 - Tigger3b DNA MER2_type -232 999 10 242 218 0 0 chrX 82833376 82833431 -94140709 - L1MC4 LINE L1 -1340 6702 6648 2831 6 0 0 chrX 82833905 82834216 -94139924 + AluYa5 SINE Alu 1 311 0 263 167 141 51 chrX 82835502 82835580 -94138560 - L2 LINE L2 -1 3312 3228 9082 199 19 34 chrX 82837842 82840739 -94133401 - L1MA2 LINE L1 0 7723 4785 1816 152 0 4 chrX 82840739 82841008 -94133132 + MER1B DNA MER1_type 1 268 -71 9082 199 19 34 chrX 82841008 82841965 -94132175 - L1MA2 LINE L1 -2938 4785 3816 222 116 0 0 chrX 82841965 82842008 -94132132 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 9082 199 19 34 chrX 82842008 82843651 -94130489 - L1MA2 LINE L1 -3907 3816 2293 195 69 0 0 chrX 82844327 82844356 -94129784 + (TC)n Simple_repeat Simple_repeat 1 29 0 289 280 21 105 chrX 82844867 82845010 -94129130 + MIR3 SINE MIR 14 144 -64 659 234 143 0 chrX 82845055 82845230 -94128910 + MIR SINE MIR 61 260 -2 221 155 17 35 chrX 82845387 82845445 -94128695 + (CA)n Simple_repeat Simple_repeat 1 57 0 230 177 97 16 chrX 82846639 82846701 -94127439 + MIR SINE MIR 85 151 -111 451 196 31 0 chrX 82846706 82846803 -94127337 + MER113 DNA MER1_type? 1 100 -421 23 0 0 0 chrX 82846908 82846931 -94127209 + AT_rich Low_complexity Low_complexity 1 23 0 327 265 60 26 chrX 82847254 82847371 -94126769 + MIR SINE MIR 98 218 -44 312 212 50 30 chrX 82848716 82848815 -94125325 - L1M4 LINE L1 -2962 3184 3084 30 0 0 0 chrX 82849439 82849469 -94124671 + AT_rich Low_complexity Low_complexity 1 30 0 2801 176 19 54 chrX 82849937 82850562 -94123578 - MER6A DNA MER2_type 0 605 3 263 306 25 66 chrX 82850697 82850818 -94123322 - MIR SINE MIR -89 173 58 766 324 118 23 chrX 82851152 82851930 -94122210 + L1ME4a LINE L1 4473 5324 -822 610 285 95 16 chrX 82851956 82852198 -94121942 - MIR SINE MIR 0 262 2 510 275 81 33 chrX 82852222 82852433 -94121707 + L1ME4a LINE L1 5388 5608 -513 250 278 43 64 chrX 82852577 82852764 -94121376 + HAL1 LINE L1 2225 2407 -100 671 246 171 26 chrX 82852996 82853224 -94120916 - MIR SINE MIR 0 262 2 2249 195 120 20 chrX 82853633 82854193 -94119947 + L1MC3 LINE L1 7128 7743 -42 525 279 82 53 chrX 82854225 82854638 -94119502 + L1ME4a LINE L1 5697 6121 0 493 259 107 20 chrX 82854747 82855143 -94118997 + L1P4 LINE L1 5039 5458 -707 3451 130 5 27 chrX 82855144 82855705 -94118435 + MER101B LTR ERV1 22 570 0 3263 223 59 15 chrX 82855707 82856680 -94117460 + L1ME2 LINE L1 5165 6330 -4 423 0 0 0 chrX 82856990 82857037 -94117103 + (CAAAA)n Simple_repeat Simple_repeat 4 50 0 200 304 14 14 chrX 82858627 82858696 -94115444 - MER5B DNA MER1_type -98 80 12 627 264 0 57 chrX 82858899 82859092 -94115048 + MER5A DNA MER1_type 7 188 -1 231 265 276 0 chrX 82859140 82859238 -94114902 + MIR SINE MIR 46 170 -92 695 304 64 46 chrX 82859381 82859772 -94114368 + L2 LINE L2 2820 3217 -96 1034 71 0 7 chrX 82859783 82859923 -94114217 - AluSp/q SINE Alu -3 310 172 358 290 11 0 chrX 82859924 82860017 -94114123 + L2 LINE L2 3214 3307 -6 329 281 43 14 chrX 82860084 82860223 -94113917 + L1ME4a LINE L1 5148 5290 -856 1149 300 48 33 chrX 82860247 82860851 -94113289 + L1ME4a LINE L1 5336 5948 -222 1293 177 8 36 chrX 82861058 82861306 -94112834 - AluJo SINE Alu -37 275 35 332 201 84 71 chrX 82861439 82861593 -94112547 + L1ME4a LINE L1 5964 6119 -2 2034 118 7 26 chrX 82862714 82863018 -94111122 + AluSg SINE Alu 1 298 -12 520 249 40 40 chrX 82863980 82864181 -94109959 + L1MC5 LINE L1 7711 7911 -50 1227 238 58 58 chrX 82864200 82864666 -94109474 + L1MC4 LINE L1 7097 7562 -480 392 291 28 58 chrX 82864707 82865071 -94109069 + L1MC4 LINE L1 7690 8042 0 470 259 9 35 chrX 82865410 82865526 -94108614 - MIR3 SINE MIR -14 194 82 1902 161 25 0 chrX 82867314 82867630 -94106510 - MER44D DNA MER2_type -11 598 5 314 351 42 7 chrX 82868501 82868686 -94105454 - MIR SINE MIR -32 230 43 271 236 48 109 chrX 82868950 82869115 -94105025 + MIR SINE MIR 30 184 -78 2431 172 129 2 chrX 82869137 82869673 -94104467 + L1MB7 LINE L1 5568 6171 -13 857 265 98 8 chrX 82871151 82871385 -94102755 - MIR SINE MIR -3 259 5 1161 128 10 5 chrX 82871474 82871669 -94102471 + L1MA1 LINE L1 5969 6164 -138 243 61 0 0 chrX 82871744 82871777 -94102363 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 2321 86 0 22 chrX 82871939 82872253 -94101887 - AluSx SINE Alu -5 307 1 487 323 96 50 chrX 82872627 82873065 -94101075 + L2 LINE L2 2742 3267 -46 198 0 0 0 chrX 82873073 82873095 -94101045 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 466 333 130 0 chrX 82873357 82873549 -94100591 + MIR SINE MIR 36 252 -10 189 0 0 0 chrX 82873995 82874016 -94100124 + (A)n Simple_repeat Simple_repeat 1 21 0 399 113 0 0 chrX 82874201 82874263 -94099877 + (TG)n Simple_repeat Simple_repeat 2 63 0 228 197 0 16 chrX 82874611 82874672 -94099468 + L1MC4 LINE L1 6644 6703 -1339 * 229 238 0 57 chrX 82874630 82874735 -94099405 - L1MC4 LINE L1 -1339 6703 6605 598 298 113 11 chrX 82875115 82875470 -94098670 + L2 LINE L2 2723 3123 -190 22 35 0 0 chrX 82877611 82877640 -94096500 + AT_rich Low_complexity Low_complexity 1 29 0 1824 138 3 18 chrX 82877645 82877927 -94096213 + AluJb SINE Alu 3 280 -32 537 322 25 4 chrX 82877975 82878220 -94095920 + L1ME4a LINE L1 5640 5889 -232 256 207 138 23 chrX 82878362 82878410 -94095730 + L1MC5 LINE L1 5715 5756 -2052 2482 111 5 19 chrX 82878410 82878779 -94095361 + THE1B LTR MaLR 1 364 0 256 207 138 23 chrX 82878779 82878817 -94095323 + L1MC5 LINE L1 5756 5811 -1997 2677 237 63 28 chrX 82878828 82879631 -94094509 + L1ME1 LINE L1 5291 6125 -41 1432 197 0 46 chrX 82879631 82879956 -94094184 - AluJo SINE Alu -1 311 2 2677 237 63 28 chrX 82879956 82879980 -94094160 + L1ME1 LINE L1 6125 6147 -19 21 36 0 0 chrX 82881019 82881047 -94093093 + AT_rich Low_complexity Low_complexity 1 28 0 2178 113 3 0 chrX 82881315 82881617 -94092523 + AluSg SINE Alu 2 304 -6 511 246 90 19 chrX 82881679 82881890 -94092250 - L1MC5 LINE L1 -7 7954 7729 180 111 0 0 chrX 82883742 82883769 -94090371 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chrX 82884223 82884249 -94089891 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chrX 82884328 82884363 -94089777 + AT_rich Low_complexity Low_complexity 1 35 0 2165 119 50 19 chrX 82885750 82886112 -94088028 + THE1C LTR MaLR 1 373 -2 207 167 0 0 chrX 82886171 82886213 -94087927 + (TG)n Simple_repeat Simple_repeat 2 43 0 450 227 77 68 chrX 82886400 82886474 -94087666 + L1MC5 LINE L1 6736 6808 -1153 4190 58 51 9 chrX 82886474 82887041 -94087099 + LTR10C LTR ERV1 1 591 0 450 227 77 68 chrX 82887041 82887186 -94086954 + L1MC5 LINE L1 6808 6957 -1004 4651 263 82 23 chrX 82887210 82888939 -94085201 + L1MEc LINE L1 25 1855 -4541 463 229 45 32 chrX 82888932 82889089 -94085051 + L1MC5 LINE L1 6959 7117 -844 * 1575 249 34 54 chrX 82889286 82889957 -94084183 + L1MC5 LINE L1 7270 7927 -34 332 352 19 25 chrX 82891170 82891329 -94082811 + MIR3 SINE MIR 15 172 -36 201 321 19 0 chrX 82891394 82891447 -94082693 + MIR SINE MIR 1 54 -208 242 324 10 39 chrX 82891495 82891546 -94082594 - L2 LINE L2 0 3272 3224 721 255 65 20 chrX 82891546 82891793 -94082347 + MIR SINE MIR 5 262 0 242 324 10 39 chrX 82891793 82891843 -94082297 - L2 LINE L2 -48 3224 3174 1749 266 100 38 chrX 82892127 82892317 -94081823 + L1ME3A LINE L1 5163 5340 -830 2356 72 0 3 chrX 82892317 82892608 -94081532 + AluSp SINE Alu 4 293 -20 1749 266 100 38 chrX 82892608 82893234 -94080906 + L1ME3A LINE L1 5340 6050 -120 186 43 0 0 chrX 82893352 82893375 -94080765 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2028 130 0 20 chrX 82893377 82893669 -94080471 - AluSc SINE Alu -21 288 3 1354 203 130 27 chrX 82894004 82894418 -94079722 + MSTB2 LTR MaLR 1 457 0 1145 259 31 62 chrX 82894646 82895163 -94078977 + MLT1D LTR MaLR 1 501 -4 535 128 256 8 chrX 82895164 82895289 -94078851 - MER4C LTR ERV1 -19 446 291 253 82 0 197 chrX 82895349 82895410 -94078730 - MER4A LTR ERV1 -310 354 306 1004 157 176 70 chrX 82895414 82895726 -94078414 - MER4A LTR ERV1 -318 346 2 255 21 85 0 chrX 82896077 82896124 -94078016 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 599 261 157 0 chrX 82896138 82896291 -94077849 + MER5A DNA MER1_type 13 189 0 662 222 34 34 chrX 82896367 82896574 -94077566 + L1MC5 LINE L1 7711 7917 -44 358 250 0 0 chrX 82898176 82898252 -94075888 - MIR SINE MIR -77 185 110 586 249 138 58 chrX 82898330 82898591 -94075549 + Charlie2 DNA MER1_type 7 288 -2494 995 275 12 9 chrX 82898592 82898919 -94075221 + L1ME1 LINE L1 5834 6161 -5 244 188 0 0 chrX 82898933 82898981 -94075159 + Charlie2 DNA MER1_type 275 322 -2540 1926 216 111 31 chrX 82898988 82899733 -94074407 + Charlie2 DNA MER1_type 1870 2674 -188 635 235 64 39 chrX 82899843 82900047 -94074093 + L1ME3 LINE L1 5922 6130 -32 490 46 0 0 chrX 82900047 82900112 -94074028 + AluS SINE Alu 1 65 -248 1939 45 0 24 chrX 82900294 82900540 -94073600 + AluY SINE Alu 69 308 -3 516 245 13 45 chrX 82900602 82900757 -94073383 + Charlie2 DNA MER1_type 2713 2862 0 198 0 0 0 chrX 82901012 82901034 -94073106 + (A)n Simple_repeat Simple_repeat 1 22 0 231 304 0 27 chrX 82901509 82901621 -94072519 + L1M4 LINE L1 4206 4314 -1832 622 333 28 10 chrX 82902023 82902257 -94071883 - MIR SINE MIR -6 256 17 434 295 83 26 chrX 82902261 82902454 -94071686 + MIR SINE MIR 59 262 0 218 286 52 39 chrX 82902559 82902636 -94071504 - L2 LINE L2 -9 3304 3227 180 0 0 0 chrX 82903457 82903477 -94070663 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 349 207 11 46 chrX 82903532 82903619 -94070521 + L2 LINE L2 3225 3308 -5 317 316 60 47 chrX 82903838 82904058 -94070082 + MIR SINE MIR 32 244 -18 2211 95 3 3 chrX 82904079 82904374 -94069766 - AluSx SINE Alu -17 295 1 408 319 73 34 chrX 82904660 82904864 -94069276 + MIR SINE MIR 2 213 -49 27 81 0 0 chrX 82905133 82905195 -94068945 + AT_rich Low_complexity Low_complexity 1 62 0 2189 121 3 0 chrX 82905202 82905507 -94068633 - AluSg SINE Alu -4 306 1 21 36 0 0 chrX 82905508 82905536 -94068604 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 82905559 82905580 -94068560 + AT_rich Low_complexity Low_complexity 1 21 0 500 141 22 0 chrX 82906564 82906656 -94067484 - MER5A DNA MER1_type -83 106 13 363 276 60 0 chrX 82906951 82907067 -94067073 + MIR SINE MIR 48 170 -92 889 273 29 0 chrX 82907067 82907305 -94066835 - MIR SINE MIR -12 250 6 24 0 0 0 chrX 82907922 82907946 -94066194 + AT_rich Low_complexity Low_complexity 1 24 0 2267 99 3 26 chrX 82908233 82908546 -94065594 - AluSg SINE Alu -4 306 1 374 369 45 34 chrX 82909217 82909569 -94064571 + L2 LINE L2 1533 1888 -1426 485 318 97 19 chrX 82909632 82909940 -94064200 - LTR33 LTR ERVL -73 448 117 318 191 0 0 chrX 82909972 82910035 -94064105 - LTR33 LTR ERVL -458 63 1 612 315 72 76 chrX 82910035 82910771 -94063369 + L2 LINE L2 1906 2638 -676 468 352 48 13 chrX 82910995 82911225 -94062915 - MIR SINE MIR 0 262 25 194 297 22 44 chrX 82911310 82911401 -94062739 + MIR SINE MIR 174 262 0 29168 31 0 0 chrX 82911703 82915915 -94058225 - L1PA4 LINE L1 -248 5907 1696 1271 276 35 0 chrX 82965926 82966332 -94007808 - MLT1E2-int LTR MaLR -950 421 2 1369 250 33 46 chrX 82966336 82966879 -94007261 - MLT1E2 LTR MaLR -3 623 1 308 231 29 39 chrX 82966936 82967040 -94007100 - L1MDa LINE L1 -6420 120 18 982 248 48 24 chrX 82967840 82968090 -94006050 + MIR SINE MIR 7 262 0 186 167 0 0 chrX 82968358 82968394 -94005746 + GA-rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chrX 82968446 82968466 -94005674 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 286 241 12 60 chrX 82968467 82968550 -94005590 + L2 LINE L2 3235 3313 0 694 245 31 0 chrX 82968907 82969070 -94005070 - MER5A DNA MER1_type -1 188 21 669 260 139 0 chrX 82969069 82969292 -94004848 - L2 LINE L2 -37 3276 3023 * 23 33 0 0 chrX 82969365 82969395 -94004745 + AT_rich Low_complexity Low_complexity 1 30 0 1988 136 3 23 chrX 82969542 82969844 -94004296 + AluJb SINE Alu 1 296 -16 190 364 0 13 chrX 82970412 82970489 -94003651 + MIR3 SINE MIR 98 173 -35 14738 220 22 18 chrX 82971206 82971921 -94002219 - L1PA15 LINE L1 -6 6810 6100 1548 179 32 11 chrX 82971921 82972206 -94001934 - AluJb SINE Alu -21 291 1 14738 220 22 18 chrX 82972206 82976927 -93997213 - L1PA15 LINE L1 -716 6100 1330 976 292 67 54 chrX 82976953 82977340 -93996800 - L1PA15 LINE L1 -6118 669 278 737 152 0 30 chrX 82977373 82977505 -93996635 - FLAM_C SINE Alu 0 143 16 332 326 17 136 chrX 82978440 82978734 -93995406 - L2 LINE L2 0 3272 3014 1864 151 3 14 chrX 82979233 82979551 -93994589 + AluSx SINE Alu 1 315 0 2233 248 64 34 chrX 82979794 82980168 -93993972 + L1ME1 LINE L1 5401 5762 -404 2052 113 0 55 chrX 82980168 82980479 -93993661 + AluSg SINE Alu 1 294 -16 2233 248 64 34 chrX 82980479 82980841 -93993299 + L1ME1 LINE L1 5762 6157 -9 611 247 21 11 chrX 82981158 82981344 -93992796 - MER112 DNA MER1_type -7 253 66 470 81 0 0 chrX 82982644 82982718 -93991422 + L1PA10 LINE L1 6095 6168 0 199 354 53 0 chrX 82982865 82982978 -93991162 + L2 LINE L2 3150 3268 -4 369 43 0 0 chrX 82983457 82983504 -93990636 + (TG)n Simple_repeat Simple_repeat 2 48 0 199 297 22 44 chrX 82983974 82984065 -93990075 - MIR SINE MIR 0 262 174 472 352 48 13 chrX 82984150 82984380 -93989760 + MIR SINE MIR 25 262 0 617 315 72 76 chrX 82984604 82985340 -93988800 - L2 LINE L2 -676 2638 1906 339 191 0 0 chrX 82985340 82985403 -93988737 + LTR33 LTR ERVL 1 63 -458 582 318 97 19 chrX 82985435 82985743 -93988397 + LTR33 LTR ERVL 117 448 -73 372 369 45 34 chrX 82985806 82986158 -93987982 - L2 LINE L2 -1426 1888 1533 2242 99 3 26 chrX 82986829 82987142 -93986998 + AluSg SINE Alu 1 306 -4 24 0 0 0 chrX 82987429 82987453 -93986687 + AT_rich Low_complexity Low_complexity 1 24 0 862 277 29 0 chrX 82988070 82988308 -93985832 + MIR SINE MIR 6 250 -12 360 276 60 0 chrX 82988308 82988424 -93985716 - MIR SINE MIR -92 170 48 507 141 22 0 chrX 82988719 82988811 -93985329 + MER5A DNA MER1_type 13 106 -83 21 0 0 0 chrX 82989795 82989816 -93984324 + AT_rich Low_complexity Low_complexity 1 21 0 2217 121 3 0 chrX 82989868 82990173 -93983967 + AluSg SINE Alu 1 306 -4 27 81 0 0 chrX 82990180 82990242 -93983898 + AT_rich Low_complexity Low_complexity 1 62 0 408 319 73 34 chrX 82990511 82990715 -93983425 - MIR SINE MIR -49 213 2 2245 95 3 3 chrX 82991001 82991296 -93982844 + AluSx SINE Alu 1 295 -17 316 291 74 61 chrX 82991317 82991537 -93982603 - MIR SINE MIR -18 244 32 353 207 11 46 chrX 82991756 82991843 -93982297 - L2 LINE L2 -5 3308 3225 180 0 0 0 chrX 82991898 82991918 -93982222 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 215 250 67 17 chrX 82992754 82992814 -93981326 + MIR SINE MIR 198 260 -2 434 295 83 26 chrX 82992921 82993114 -93981026 - MIR SINE MIR 0 262 59 613 333 28 10 chrX 82993118 82993352 -93980788 + MIR SINE MIR 17 256 -6 198 0 0 0 chrX 82994342 82994364 -93979776 + (T)n Simple_repeat Simple_repeat 1 22 0 507 245 13 45 chrX 82994619 82994774 -93979366 - Charlie2 DNA MER1_type 0 2862 2713 1963 45 0 24 chrX 82994836 82995082 -93979058 - AluY SINE Alu -3 308 69 504 46 0 0 chrX 82995264 82995329 -93978811 - AluS SINE Alu -248 65 1 626 235 64 39 chrX 82995329 82995533 -93978607 - L1ME3 LINE L1 -32 6130 5922 1854 216 111 31 chrX 82995643 82996388 -93977752 - Charlie2 DNA MER1_type -188 2674 1870 243 188 0 0 chrX 82996395 82996443 -93977697 - Charlie2 DNA MER1_type -2540 322 275 974 275 12 9 chrX 82996457 82996784 -93977356 - L1ME1 LINE L1 -5 6161 5834 574 249 138 58 chrX 82996785 82997046 -93977094 - Charlie2 DNA MER1_type -2574 288 7 351 250 0 0 chrX 82997124 82997200 -93976940 + MIR SINE MIR 110 185 -77 645 193 53 53 chrX 82998802 82999009 -93975131 - L1MC5 LINE L1 -44 7917 7711 600 261 157 0 chrX 82999085 82999238 -93974902 - MER5A DNA MER1_type 0 189 13 255 21 85 0 chrX 82999252 82999299 -93974841 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 181 219 0 0 chrX 82999425 82999457 -93974683 - L2 LINE L2 -36 3236 3205 1014 157 176 70 chrX 82999650 82999962 -93974178 + MER4A LTR ERV1 2 346 -318 253 82 0 197 chrX 82999966 83000027 -93974113 + MER4A LTR ERV1 306 354 -310 538 128 256 8 chrX 83000087 83000212 -93973928 + MER4C LTR ERV1 291 446 -19 1153 259 31 62 chrX 83000213 83000730 -93973410 - MLT1D LTR MaLR -4 501 1 1369 203 130 27 chrX 83000958 83001372 -93972768 - MSTB2 LTR MaLR 0 457 1 2058 130 0 20 chrX 83001707 83002024 -93972116 + AluSc SINE Alu 3 313 0 1710 266 100 38 chrX 83002142 83002768 -93971372 - L1ME3A LINE L1 -120 6050 5340 2349 72 3 3 chrX 83002768 83003058 -93971082 - AluSp SINE Alu -20 293 4 1710 266 100 38 chrX 83003058 83003248 -93970892 - L1ME3A LINE L1 -830 5340 5163 239 324 10 39 chrX 83003532 83003582 -93970558 + L2 LINE L2 3174 3221 -51 711 255 65 20 chrX 83003582 83003829 -93970311 - MIR SINE MIR 0 262 5 239 324 10 39 chrX 83003829 83003880 -93970260 + L2 LINE L2 3221 3272 0 199 321 19 0 chrX 83003928 83003981 -93970159 - MIR SINE MIR -208 54 1 323 352 19 25 chrX 83004046 83004205 -93969935 - MIR3 SINE MIR -36 172 15 1542 247 34 54 chrX 83005418 83006089 -93968051 - L1MC5 LINE L1 -34 7927 7270 450 229 45 32 chrX 83006286 83006443 -93967697 - L1MC5 LINE L1 -844 7117 6959 * 4551 261 82 23 chrX 83006436 83008166 -93965974 - L1MEc LINE L1 -4541 1855 25 450 227 77 68 chrX 83008190 83008335 -93965805 - L1MC5 LINE L1 -1004 6957 6808 4197 58 51 9 chrX 83008335 83008902 -93965238 - LTR10C LTR ERV1 0 591 1 450 227 77 68 chrX 83008902 83008976 -93965164 - L1MC5 LINE L1 -1153 6808 6736 207 167 0 0 chrX 83009163 83009205 -93964935 + (CA)n Simple_repeat Simple_repeat 2 43 0 2165 119 50 19 chrX 83009264 83009626 -93964514 - THE1C LTR MaLR -2 373 1 21 57 0 0 chrX 83011013 83011048 -93963092 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chrX 83011127 83011153 -93962987 + AT_rich Low_complexity Low_complexity 1 26 0 180 111 0 0 chrX 83011607 83011634 -93962506 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 511 246 90 19 chrX 83013486 83013697 -93960443 + L1MC5 LINE L1 7729 7954 -7 2158 116 3 0 chrX 83013759 83014062 -93960078 - AluSg SINE Alu -5 305 2 21 36 0 0 chrX 83014330 83014358 -93959782 + AT_rich Low_complexity Low_complexity 1 28 0 2657 238 63 28 chrX 83015397 83015421 -93958719 - L1ME1 LINE L1 -19 6147 6125 1472 194 0 46 chrX 83015421 83015746 -93958394 + AluJo SINE Alu 2 311 -1 2657 238 63 28 chrX 83015746 83016549 -93957591 - L1ME1 LINE L1 -41 6125 5291 256 207 138 23 chrX 83016560 83016598 -93957542 - L1MC5 LINE L1 -1997 5811 5779 2482 111 5 19 chrX 83016598 83016967 -93957173 - THE1B LTR MaLR 0 364 1 256 207 138 23 chrX 83016967 83017015 -93957125 - L1MC5 LINE L1 -2029 5779 5715 537 322 25 4 chrX 83017157 83017402 -93956738 - L1ME4a LINE L1 -232 5889 5640 1824 138 3 18 chrX 83017450 83017732 -93956408 - AluJb SINE Alu -32 280 3 22 35 0 0 chrX 83017737 83017766 -93956374 + AT_rich Low_complexity Low_complexity 1 29 0 598 298 113 11 chrX 83019907 83020262 -93953878 - L2 LINE L2 -190 3123 2723 229 238 0 57 chrX 83020642 83020747 -93953393 + L1MC4 LINE L1 6605 6703 -1339 228 197 0 16 chrX 83020705 83020766 -93953374 - L1MC4 LINE L1 -1339 6703 6644 * 399 113 0 0 chrX 83021114 83021176 -93952964 + (CA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chrX 83021361 83021381 -93952759 + (T)n Simple_repeat Simple_repeat 1 20 0 466 333 130 0 chrX 83021827 83022019 -93952121 - MIR SINE MIR -10 252 36 198 0 0 0 chrX 83022281 83022303 -93951837 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 487 323 96 50 chrX 83022311 83022749 -93951391 - L2 LINE L2 -46 3267 2742 2347 83 0 22 chrX 83023123 83023437 -93950703 + AluSx SINE Alu 1 307 -5 243 61 0 0 chrX 83023599 83023632 -93950508 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 1161 128 10 5 chrX 83023707 83023902 -93950238 - L1MA1 LINE L1 -138 6164 5969 857 265 98 8 chrX 83023991 83024225 -93949915 + MIR SINE MIR 5 259 -3 2431 172 129 2 chrX 83025703 83026239 -93947901 - L1MB7 LINE L1 -13 6171 5568 271 236 48 109 chrX 83026261 83026426 -93947714 - MIR SINE MIR -78 184 30 314 351 42 7 chrX 83026690 83026875 -93947265 + MIR SINE MIR 43 230 -32 1902 161 25 0 chrX 83027746 83028062 -93946078 + MER44D DNA MER2_type 5 598 -11 470 259 9 35 chrX 83029850 83029966 -93944174 + MIR3 SINE MIR 82 194 -14 423 296 28 42 chrX 83030305 83030663 -93943477 - L1MC4 LINE L1 0 8042 7690 1298 232 58 58 chrX 83030704 83031170 -93942970 - L1MC4 LINE L1 -480 7562 7097 520 249 40 40 chrX 83031189 83031390 -93942750 - L1MC5 LINE L1 -50 7911 7711 2034 118 7 26 chrX 83032352 83032656 -93941484 - AluSg SINE Alu -12 298 1 332 201 84 71 chrX 83033777 83033931 -93940209 - L1ME4a LINE L1 -2 6119 5964 1293 177 8 36 chrX 83034064 83034312 -93939828 + AluJo SINE Alu 35 275 -37 1149 300 48 33 chrX 83034519 83035123 -93939017 - L1ME4a LINE L1 -222 5948 5336 329 281 43 14 chrX 83035147 83035286 -93938854 - L1ME4a LINE L1 -856 5290 5148 358 290 11 0 chrX 83035353 83035446 -93938694 - L2 LINE L2 -6 3307 3214 1034 71 0 7 chrX 83035447 83035587 -93938553 + AluSp/q SINE Alu 172 310 -3 695 304 64 46 chrX 83035598 83035989 -93938151 - L2 LINE L2 -96 3217 2820 231 265 276 0 chrX 83036132 83036230 -93937910 - MIR SINE MIR -92 170 46 627 264 0 57 chrX 83036278 83036471 -93937669 - MER5A DNA MER1_type -1 188 7 200 304 14 14 chrX 83036674 83036743 -93937397 + MER5B DNA MER1_type 12 80 -98 378 0 0 0 chrX 83038333 83038375 -93935765 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 367 229 33 46 chrX 83038685 83038703 -93935437 - L1MA10 LINE L1 -4 6330 6313 3263 223 60 14 chrX 83038703 83039658 -93934482 - L1ME2 LINE L1 -12 6152 5165 3451 130 5 27 chrX 83039660 83040221 -93933919 - MER101B LTR ERV1 0 570 22 493 259 107 20 chrX 83040222 83040618 -93933522 - L1P4 LINE L1 -707 5458 5039 519 279 82 53 chrX 83040727 83041139 -93933001 - L1ME4a LINE L1 -1 6120 5697 2276 191 122 20 chrX 83041171 83041730 -93932410 - L1MC3 LINE L1 -42 7743 7128 671 246 171 26 chrX 83042139 83042367 -93931773 + MIR SINE MIR 2 262 0 253 278 43 64 chrX 83042599 83042786 -93931354 - HAL1 LINE L1 -100 2407 2225 510 275 81 33 chrX 83042930 83043141 -93930999 - L1ME4a LINE L1 -513 5608 5388 610 285 95 16 chrX 83043165 83043407 -93930733 + MIR SINE MIR 2 262 0 752 325 118 23 chrX 83043433 83044211 -93929929 - L1ME4a LINE L1 -822 5324 4473 263 306 25 66 chrX 83044545 83044666 -93929474 + MIR SINE MIR 58 173 -89 2814 174 19 54 chrX 83044801 83045426 -93928714 + MER6A DNA MER2_type 3 605 0 30 0 0 0 chrX 83045894 83045924 -93928216 + AT_rich Low_complexity Low_complexity 1 30 0 312 212 50 30 chrX 83046548 83046647 -93927493 + L1M4 LINE L1 3084 3184 -2962 327 265 60 26 chrX 83047992 83048109 -93926031 - MIR SINE MIR -44 218 98 23 0 0 0 chrX 83048432 83048455 -93925685 + AT_rich Low_complexity Low_complexity 1 23 0 451 196 31 0 chrX 83048560 83048657 -93925483 - MER113 DNA MER1_type? -421 100 1 230 177 97 16 chrX 83048662 83048724 -93925416 - MIR SINE MIR -111 151 85 438 53 0 0 chrX 83049918 83049975 -93924165 + (TG)n Simple_repeat Simple_repeat 1 57 0 659 234 143 0 chrX 83050132 83050307 -93923833 - MIR SINE MIR -2 260 61 289 280 21 105 chrX 83050352 83050495 -93923645 - MIR3 SINE MIR -64 144 14 195 69 0 0 chrX 83051006 83051035 -93923105 + (GA)n Simple_repeat Simple_repeat 1 29 0 9082 205 20 36 chrX 83051711 83053354 -93920786 + L1MA2 LINE L1 2293 3960 -3763 222 116 0 0 chrX 83053354 83053397 -93920743 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 9082 205 20 36 chrX 83053397 83054354 -93919786 + L1MA2 LINE L1 3960 4930 -2793 1816 152 0 4 chrX 83054354 83054623 -93919517 - MER1B DNA MER1_type -71 268 1 9082 205 20 36 chrX 83054623 83057520 -93916620 + L1MA2 LINE L1 4930 7723 0 263 167 141 51 chrX 83059782 83059860 -93914280 + L2 LINE L2 3228 3312 -1 2831 6 0 0 chrX 83061146 83061457 -93912683 - AluYa5 SINE Alu 0 311 1 242 218 0 0 chrX 83061931 83061986 -93912154 + L1MC4 LINE L1 6648 6702 -1340 4976 129 66 47 chrX 83061997 83062969 -93911171 + Tigger3b DNA MER2_type 10 999 -232 947 188 0 0 chrX 83062970 83063119 -93911021 + AluJb SINE Alu 145 293 -19 482 203 25 17 chrX 83063141 83063259 -93910881 + L1MC/D LINE L1 5625 5743 -616 1348 231 39 60 chrX 83063872 83064392 -93909748 - L1ME2 LINE L1 -31 6133 5625 1526 171 3 38 chrX 83064414 83064706 -93909434 - AluJo SINE Alu -19 293 12 1333 229 74 3 chrX 83064728 83065108 -93909032 - L1ME2 LINE L1 -1207 4939 4533 266 273 0 0 chrX 83065135 83065201 -93908939 - L1ME2 LINE L1 -1594 4552 4487 472 200 11 0 chrX 83065295 83065390 -93908750 - L1MA4A LINE L1 -25 6278 6183 1620 159 3 10 chrX 83065395 83065690 -93908450 - L1MA4A LINE L1 -188 6115 5823 2599 249 37 23 chrX 83065720 83066588 -93907552 - L1ME2 LINE L1 -2962 3184 2305 680 174 67 34 chrX 83066611 83066697 -93907443 + MLT1B LTR MaLR 3 98 -292 1479 216 27 3 chrX 83066697 83066998 -93907142 + AluJo SINE Alu 1 308 -4 680 174 67 34 chrX 83066998 83067060 -93907080 + MLT1B LTR MaLR 98 156 -234 276 146 0 0 chrX 83067045 83067093 -93907047 - MADE1 DNA Mariner -32 48 1 * 184 339 116 27 chrX 83068801 83068861 -93905279 - MIR SINE MIR -43 219 166 2985 222 17 5 chrX 83068861 83069506 -93904634 + MER82 DNA MER2_type 1 653 0 184 339 116 27 chrX 83069506 83069557 -93904583 - MIR SINE MIR -96 166 98 1327 209 32 44 chrX 83069951 83070267 -93903873 - AluJo SINE Alu 0 312 1 1009 194 16 41 chrX 83071768 83072010 -93902130 - MER106A DNA MER1_type 0 236 1 1637 257 30 132 chrX 83072697 83073807 -93900333 + MLT1E2-int LTR MaLR 375 1370 -1 1176 262 20 33 chrX 83073808 83074201 -93899939 + MLT1E2 LTR MaLR 1 388 -238 229 229 67 140 chrX 83074800 83074979 -93899161 - MIR SINE MIR 0 262 97 301 301 27 41 chrX 83075064 83075210 -93898930 - L2 LINE L2 -946 2368 2225 186 356 107 23 chrX 83075475 83075784 -93898356 - L2 LINE L2 -2304 1010 676 334 344 126 41 chrX 83076001 83076295 -93897845 + L2 LINE L2 2951 3269 -3 344 310 28 42 chrX 83076439 83076581 -93897559 + MER5A DNA MER1_type 47 186 -3 310 296 24 72 chrX 83076472 83076597 -93897543 - MER5A DNA MER1_type -69 120 2 * 780 242 5 21 chrX 83078599 83078785 -93895355 + MER5A DNA MER1_type 7 189 0 2288 336 58 35 chrX 83078859 83080214 -93893926 + ERVL LTR ERVL 1312 2812 -2952 22 35 0 0 chrX 83080261 83080290 -93893850 + AT_rich Low_complexity Low_complexity 1 29 0 205 156 141 0 chrX 83080290 83080319 -93893821 - MER5C DNA MER1_type -42 282 258 1424 190 0 19 chrX 83080319 83080588 -93893552 - L1PA16 LINE L1 -6 6160 5897 205 156 141 0 chrX 83080588 83080622 -93893518 - MER5C DNA MER1_type -66 258 210 295 301 140 0 chrX 83080669 83080762 -93893378 - MER5C DNA MER1_type -218 106 1 906 338 59 9 chrX 83080773 83080922 -93893218 + ERVL LTR ERVL 2826 2966 -2798 369 0 0 0 chrX 83080922 83080963 -93893177 + (CA)n Simple_repeat Simple_repeat 1 41 0 906 338 59 9 chrX 83080963 83081269 -93892871 + ERVL LTR ERVL 2966 3304 -2460 3286 164 11 5 chrX 83081460 83082028 -93892112 + L1MC1 LINE L1 5615 6185 -148 3551 26 0 5 chrX 83082083 83082506 -93891634 - L1PA3 LINE L1 -4 6151 5731 750 217 25 0 chrX 83082508 83082665 -93891475 + L1MC1 LINE L1 6171 6331 -2 1701 294 42 16 chrX 83082721 83083597 -93890543 + ERVL LTR ERVL 3569 4552 -1102 1434 288 56 37 chrX 83083700 83084329 -93889811 + ERVL LTR ERVL 4740 5380 -384 783 242 31 21 chrX 83084555 83084749 -93889391 + LTR33 LTR ERVL 2 197 -324 524 239 49 54 chrX 83084829 83085013 -93889127 + LTR33 LTR ERVL 339 521 0 863 222 34 8 chrX 83086214 83086453 -93887687 + L1MB8 LINE L1 5831 6075 -103 520 151 0 0 chrX 83086559 83086645 -93887495 + L1MB7 LINE L1 6089 6174 -10 669 284 29 29 chrX 83086931 83087023 -93887117 - MIR SINE MIR -11 251 160 2542 153 21 5 chrX 83087023 83087442 -93886698 + MSTB LTR MaLR 1 426 0 669 284 29 29 chrX 83087442 83087553 -93886587 - MIR SINE MIR -101 161 48 615 279 43 75 chrX 83088646 83088994 -93885146 - MLT1I LTR MaLR -2 407 71 204 185 0 0 chrX 83090831 83090885 -93883255 + CT-rich Low_complexity Low_complexity 2 55 0 186 133 0 0 chrX 83091255 83091285 -93882855 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 467 346 12 8 chrX 83091993 83092236 -93881904 + L2 LINE L2 2373 2616 -698 * 683 305 8 47 chrX 83092235 83092471 -93881669 - MIR SINE MIR -2 260 34 325 289 235 5 chrX 83092506 83092816 -93881324 + L2 LINE L2 2616 3045 -227 459 299 26 81 chrX 83092892 83093163 -93880977 + L2 LINE L2 3057 3312 -1 309 406 10 8 chrX 83093211 83093527 -93880613 - L2 LINE L2 -213 3059 2707 442 349 83 93 chrX 83093900 83095461 -93878679 - L2 LINE L2 -477 2837 1293 200 304 0 0 chrX 83096085 83096131 -93878009 - L2 LINE L2 -344 2970 2925 3546 180 112 117 chrX 83097392 83097757 -93876383 - L1MC3 LINE L1 0 7785 7420 1955 156 0 3 chrX 83097757 83098065 -93876075 - AluJb SINE Alu -5 307 1 3546 180 112 117 chrX 83098065 83098310 -93875830 - L1MC3 LINE L1 -365 7420 7175 277 273 34 23 chrX 83098310 83098398 -93875742 - MLT1F1 LTR MaLR -434 133 45 3546 180 112 117 chrX 83098398 83098849 -93875291 - L1MC3 LINE L1 -610 7175 6641 278 173 0 0 chrX 83100560 83100612 -93873528 - L2 LINE L2 0 3313 3262 347 258 73 53 chrX 83100748 83100899 -93873241 + L1MC5 LINE L1 7366 7519 -442 363 292 95 7 chrX 83100942 83101079 -93873061 + L1MB7 LINE L1 6027 6175 -9 392 264 28 0 chrX 83101164 83101270 -93872870 + L1MC4 LINE L1 7790 7898 -144 277 355 88 38 chrX 83101753 83102124 -93872016 + L2 LINE L2 2770 3202 -70 1484 270 18 16 chrX 83102138 83102582 -93871558 + L2 LINE L2 1661 2105 -1209 21 0 0 0 chrX 83103046 83103067 -93871073 + AT_rich Low_complexity Low_complexity 1 21 0 294 246 16 0 chrX 83103198 83103259 -93870881 + Charlie1 DNA MER1_type 9 70 -2691 * 1611 188 48 51 chrX 83103258 83103672 -93870468 + Charlie1 DNA MER1_type 2343 2755 -6 34 24 0 0 chrX 83103722 83103763 -93870377 + AT_rich Low_complexity Low_complexity 1 41 0 230 0 33 0 chrX 83103773 83103803 -93870337 + (TA)n Simple_repeat Simple_repeat 2 32 0 306 333 39 31 chrX 83103813 83103942 -93870198 + MER5A DNA MER1_type 54 183 -6 2472 53 0 0 chrX 83104032 83104332 -93869808 - AluY SINE Alu -11 300 1 2575 45 0 10 chrX 83105027 83105336 -93868804 + AluY SINE Alu 1 306 -5 419 289 16 55 chrX 83105336 83105418 -93868722 + MER5A DNA MER1_type 67 144 -45 2271 85 3 3 chrX 83105418 83105723 -93868417 + AluSx SINE Alu 1 305 -7 419 289 16 55 chrX 83105723 83105768 -93868372 + MER5A DNA MER1_type 144 189 0 232 324 40 34 chrX 83107275 83107423 -93866717 + MIR SINE MIR 50 198 -64 495 263 0 25 chrX 83108082 83108200 -93865940 - L2 LINE L2 0 3313 3199 349 289 73 28 chrX 83108634 83108680 -93865460 + L1MB7 LINE L1 20 62 -6797 1325 187 4 0 chrX 83108680 83108915 -93865225 + MER46A DNA MER2_type 1 236 0 349 289 73 28 chrX 83108915 83109086 -93865054 + L1MB7 LINE L1 62 247 -6612 2906 220 56 30 chrX 83109105 83110760 -93863380 + L1MB7 LINE L1 5252 6995 0 368 238 88 27 chrX 83111440 83111587 -93862553 - L1ME4a LINE L1 -215 5906 5751 27 0 0 0 chrX 83111593 83111620 -93862520 + AT_rich Low_complexity Low_complexity 1 27 0 2217 82 34 0 chrX 83111629 83111920 -93862220 + AluSx SINE Alu 1 301 -11 24 67 0 0 chrX 83112087 83112132 -93862008 + AT_rich Low_complexity Low_complexity 1 45 0 191 275 84 70 chrX 83112152 83112294 -93861846 + L2 LINE L2 3168 3311 -2 217 315 82 55 chrX 83112369 83112515 -93861625 - L2 LINE L2 -3 3310 3161 4145 148 23 29 chrX 83112656 83113444 -93860696 + L1MA6 LINE L1 5507 6289 -11 26 0 0 0 chrX 83113452 83113478 -93860662 + AT_rich Low_complexity Low_complexity 1 26 0 2969 99 45 2 chrX 83113478 83113922 -93860218 - L1PB2 LINE L1 -3 6148 5686 361 270 88 19 chrX 83114384 83114543 -93859597 + LTR67 LTR ERVL 388 557 0 321 287 11 0 chrX 83114549 83114643 -93859497 - MIR SINE MIR -108 154 60 2266 105 3 0 chrX 83114837 83115143 -93858997 - AluSx SINE Alu -4 308 2 26 0 0 0 chrX 83116194 83116220 -93857920 + AT_rich Low_complexity Low_complexity 1 26 0 225 325 0 0 chrX 83116377 83116457 -93857683 - L1MC/D LINE L1 -1877 5931 5852 2894 145 40 4 chrX 83116591 83117396 -93856744 + L1M2 LINE L1 4776 5599 -698 2228 108 3 0 chrX 83118056 83118352 -93855788 + AluSq SINE Alu 1 297 -16 746 246 26 11 chrX 83118697 83118888 -93855252 - MIR SINE MIR -37 225 32 22 0 0 0 chrX 83119220 83119242 -93854898 + AT_rich Low_complexity Low_complexity 1 22 0 258 32 0 0 chrX 83119656 83119687 -93854453 + (TAGA)n Simple_repeat Simple_repeat 2 32 0 239 130 43 29 chrX 83119687 83119756 -93854384 + (TA)n Simple_repeat Simple_repeat 2 71 0 4132 168 38 14 chrX 83119972 83120894 -93853246 + L1MA8 LINE L1 5091 5989 -302 1818 113 3 94 chrX 83120894 83121223 -93852917 + AluSc SINE Alu 1 299 -10 4132 168 38 14 chrX 83121223 83121258 -93852882 + L1MA8 LINE L1 5989 6022 -269 711 161 45 0 chrX 83121258 83121406 -93852734 + L1MA8 LINE L1 6124 6285 -6 4132 168 38 14 chrX 83121406 83121433 -93852707 + L1MA8 LINE L1 6022 6285 -6 2867 215 75 27 chrX 83122157 83122505 -93851635 + L1ME1 LINE L1 4801 5131 -1035 539 78 133 0 chrX 83122505 83122595 -93851545 + L1MA4 LINE L1 6195 6296 -4 2867 215 75 27 chrX 83122595 83123471 -93850669 + L1ME1 LINE L1 5131 6094 -72 307 230 195 0 chrX 83124506 83124593 -93849547 + L1M LINE L1 5320 5423 -2385 364 230 62 9 chrX 83124630 83124743 -93849397 + HAL1b LINE L1 1230 1348 0 300 308 59 54 chrX 83124792 83125013 -93849127 + L1ME4a LINE L1 4798 5019 -1127 212 353 20 20 chrX 83125140 83125242 -93848898 + L2 LINE L2 3165 3266 -6 406 271 83 79 chrX 83125256 83125773 -93848367 + L1ME4a LINE L1 5525 6043 -78 243 0 0 0 chrX 83126955 83126982 -93847158 + (T)n Simple_repeat Simple_repeat 1 27 0 22 56 0 0 chrX 83127110 83127146 -93846994 + AT_rich Low_complexity Low_complexity 1 36 0 343 293 7 7 chrX 83127452 83127592 -93846548 + (CCG)n Simple_repeat Simple_repeat 3 142 0 564 165 0 0 chrX 83127767 83127882 -93846258 + (CAG)n Simple_repeat Simple_repeat 1 115 0 437 375 0 6 chrX 83130239 83130415 -93843725 + G-rich Low_complexity Low_complexity 2 176 0 375 41 0 0 chrX 83131016 83131065 -93843075 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 1818 96 100 0 chrX 83131069 83131320 -93842820 - AluSp SINE Alu -37 276 1 328 231 92 31 chrX 83131602 83131732 -93842408 - L1ME4a LINE L1 -13 6108 5971 21 71 0 0 chrX 83132790 83132832 -93841308 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chrX 83133875 83133906 -93840234 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chrX 83133981 83134010 -93840130 + AT_rich Low_complexity Low_complexity 1 29 0 256 115 98 49 chrX 83134091 83134152 -93839988 - L1ME4a LINE L1 -4 6117 6054 21648 89 8 6 chrX 83134359 83138321 -93835819 - L1PA7 LINE L1 -1 6468 2504 12096 107 31 24 chrX 83138316 83140527 -93833613 - L1PA7 LINE L1 -4195 2266 11 * 390 160 0 40 chrX 83140535 83140610 -93833530 - L1MA6 LINE L1 -19 6281 6210 234 289 89 33 chrX 83140829 83141009 -93833131 - L1 LINE L1 -1054 5092 4903 384 276 26 6 chrX 83141293 83141449 -93832691 - L1 LINE L1 -1530 4616 4458 230 213 128 0 chrX 83142230 83142277 -93831863 + MER5B DNA MER1_type 123 175 -3 2034 213 72 37 chrX 83142494 83143061 -93831079 - L1MD2 LINE L1 -13 6346 5760 234 0 0 0 chrX 83143128 83143154 -93830986 + (A)n Simple_repeat Simple_repeat 1 26 0 582 228 26 0 chrX 83143236 83143350 -93830790 - MIR SINE MIR -142 120 4 701 294 25 10 chrX 83143899 83144100 -93830040 + MIR SINE MIR 59 262 0 4625 129 32 8 chrX 83144743 83145515 -93828625 - L1MA3 LINE L1 0 6305 5515 21 0 0 0 chrX 83146902 83146923 -93827217 + AT_rich Low_complexity Low_complexity 1 21 0 842 285 50 18 chrX 83146929 83147311 -93826829 + L1ME4a LINE L1 5519 5912 -209 6678 142 48 9 chrX 83147311 83148485 -93825655 - Tigger3b DNA MER2_type -12 1219 1 194 345 23 35 chrX 83148888 83148975 -93825165 - MIR SINE MIR -55 153 68 5424 117 72 2 chrX 83149250 83150134 -93824006 - L1MA3 LINE L1 0 6305 5360 2482 146 39 5 chrX 83150136 83150546 -93823594 - MSTA LTR MaLR -2 426 3 7618 194 70 7 chrX 83150549 83152083 -93822057 - MSTA-int LTR MaLR 0 1651 22 2134 156 78 2 chrX 83152094 83152492 -93821648 - MSTA LTR MaLR 0 428 1 6588 193 21 10 chrX 83152492 83153934 -93820206 - L1MA3 LINE L1 -782 5364 3907 11184 131 9 2 chrX 83153935 83156553 -93817587 + L1PA10 LINE L1 3540 6168 0 21 36 0 0 chrX 83157039 83157067 -93817073 + AT_rich Low_complexity Low_complexity 1 28 0 2988 197 47 28 chrX 83157511 83157607 -93816533 - L1MB8 LINE L1 -11 6167 6072 1697 195 48 155 chrX 83157607 83158201 -93815939 - L1MD3 LINE L1 -743 5403 5608 486 98 37 0 chrX 83158201 83158283 -93815857 - L1MA5 LINE L1 0 6300 6216 1697 195 48 155 chrX 83158283 83158665 -93815475 - L1MD3 LINE L1 -537 5609 5188 244 170 19 0 chrX 83158677 83158730 -93815410 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 6055 160 22 35 chrX 83158730 83160736 -93813404 - L1MA1 LINE L1 0 6302 4321 473 239 0 0 chrX 83160746 83160838 -93813302 - L1PA12 LINE L1 -6372 1209 1118 365 169 0 14 chrX 83160845 83160916 -93813224 - L1P LINE L1 -4379 1767 1698 * 1309 216 38 65 chrX 83160904 83161399 -93812741 - L1MD3 LINE L1 -1314 4832 4351 2138 164 42 17 chrX 83161834 83162243 -93811897 - MSTA LTR MaLR 0 428 10 8640 178 41 10 chrX 83162246 83163675 -93810465 - MSTA-int LTR MaLR 0 1651 166 2153 112 0 30 chrX 83163675 83163978 -93810162 - AluSx SINE Alu -18 294 1 8640 178 41 10 chrX 83163978 83164150 -93809990 - MSTA-int LTR MaLR -1485 166 1 2576 147 16 5 chrX 83164150 83164573 -93809567 - MSTA LTR MaLR 0 428 1 1417 238 77 42 chrX 83165195 83165691 -93808449 + MLT2B1 LTR ERVL 1 513 -7 531 82 0 0 chrX 83165894 83165967 -93808173 + (CA)n Simple_repeat Simple_repeat 2 74 0 438 79 40 0 chrX 83165969 83166045 -93808095 + (TG)n Simple_repeat Simple_repeat 2 80 0 358 278 68 19 chrX 83166327 83166489 -93807651 + MIR SINE MIR 93 262 0 42268 38 1 1 chrX 83167489 83173640 -93800500 - L1PA3 LINE L1 -3 6152 7 219 325 26 13 chrX 83173702 83173779 -93800361 + MIR SINE MIR 25 102 -160 648 288 14 0 chrX 83175444 83175590 -93798550 + MIR SINE MIR 32 179 -83 218 353 52 52 chrX 83175855 83175971 -93798169 - L2 LINE L2 -20 3252 3137 22 56 0 0 chrX 83177936 83177972 -93796168 + AT_rich Low_complexity Low_complexity 1 36 0 1401 188 21 7 chrX 83178452 83178734 -93795406 + MER50 LTR ERV1 449 734 0 5402 160 52 20 chrX 83178776 83180116 -93794024 + MER50-int LTR ERV1 4 1466 -5739 6228 205 139 16 chrX 83180116 83181631 -93792509 - MER52A LTR ERV1 0 1755 56 305 190 0 0 chrX 83182445 83182503 -93791637 - MER52A LTR ERV1 -1697 58 1 525 141 48 26 chrX 83182713 83182822 -93791318 + MLT1B LTR MaLR 1 105 -260 295 257 8 165 chrX 83183366 83183587 -93790553 + MIR SINE MIR 10 193 -69 935 213 62 86 chrX 83183587 83183958 -93790182 - MLT1A1 LTR MaLR 0 365 4 295 257 8 165 chrX 83183958 83183973 -93790167 + MIR SINE MIR 193 209 -53 244 186 39 47 chrX 83184019 83184148 -93789992 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 1539 205 14 0 chrX 83184148 83184426 -93789714 - AluJo SINE Alu -30 282 1 383 283 11 0 chrX 83185011 83185103 -93789037 + MIR SINE MIR 3 95 -167 858 236 212 33 chrX 83185113 83185448 -93788692 - MLT1D LTR MaLR 0 505 111 253 231 121 33 chrX 83186308 83186399 -93787741 - MLT1D LTR MaLR -386 119 21 223 279 0 29 chrX 83186449 83186517 -93787623 + MIR SINE MIR 106 171 -91 413 260 0 0 chrX 83186935 83187031 -93787109 - L1MD3 LINE L1 -27 7968 7873 573 124 0 10 chrX 83187032 83187129 -93787011 + MER4A LTR ERV1 1 96 -568 1746 123 158 75 chrX 83187131 83187504 -93786636 + MER4A LTR ERV1 261 664 0 1971 161 26 76 chrX 83187507 83187821 -93786319 + MER4A-int LTR ERV1 1 329 -6269 234 0 0 0 chrX 83187821 83187847 -93786293 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1971 161 26 76 chrX 83187847 83188151 -93785989 + MER4A-int LTR ERV1 329 836 -5762 1146 253 72 12 chrX 83188203 83188535 -93785605 + MER4A-int LTR ERV1 1852 2203 -4128 4112 124 22 10 chrX 83188575 83189461 -93784679 + MER4-int LTR ERV1 198 1149 -5609 291 54 0 0 chrX 83189461 83189498 -93784642 + (TG)n Simple_repeat Simple_repeat 2 38 0 1100 97 28 23 chrX 83189501 83189718 -93784422 + MER4-int LTR ERV1 1748 1965 -4633 1120 53 0 0 chrX 83189722 83189855 -93784285 + AluY SINE Alu 1 133 -178 1902 88 41 16 chrX 83189861 83190181 -93783959 + MER4-int LTR ERV1 4552 4879 -1719 3314 174 24 1 chrX 83190182 83191341 -93782799 + L1PB1 LINE L1 4603 5789 -362 517 111 16 24 chrX 83191342 83191468 -93782672 + (TA)n Simple_repeat Simple_repeat 1 125 0 691 129 23 94 chrX 83191469 83191556 -93782584 + L1PB1 LINE L1 5783 5854 -297 2385 95 3 0 chrX 83191556 83191860 -93782280 - AluSp SINE Alu -8 305 1 691 129 23 94 chrX 83191860 83191943 -93782197 + L1PB1 LINE L1 5854 5941 -210 22 56 0 0 chrX 83192329 83192365 -93781775 + AT_rich Low_complexity Low_complexity 1 36 0 336 238 16 23 chrX 83192881 83193010 -93781130 - L1MCa LINE L1 -1339 6983 1995 25 0 0 0 chrX 83193271 83193296 -93780844 + AT_rich Low_complexity Low_complexity 1 25 0 303 233 0 0 chrX 83193385 83193445 -93780695 - L2 LINE L2 -4 3268 3209 539 352 53 8 chrX 83194056 83194303 -93779837 + MIR SINE MIR 2 259 -3 24 32 0 0 chrX 83195157 83195188 -93778952 + AT_rich Low_complexity Low_complexity 1 31 0 202 282 12 0 chrX 83195441 83195526 -93778614 + (TA)n Simple_repeat Simple_repeat 2 87 0 252 377 132 6 chrX 83195892 83196051 -93778089 + L2 LINE L2 3076 3254 -18 21 0 0 31 chrX 83196208 83196226 -93777914 + AT_rich Low_complexity Low_complexity 1 19 -12 10452 26 0 0 chrX 83196226 83198227 -93775913 + L1PA3 LINE L1 4152 6152 -3 21 0 0 31 chrX 83198227 83198240 -93775900 + AT_rich Low_complexity Low_complexity 19 31 0 22982 36 0 3 chrX 83198596 83202214 -93771926 + L1PA4 LINE L1 2531 6154 -1 369 290 28 0 chrX 83202233 83202340 -93771800 - MIR SINE MIR -50 212 103 1625 215 29 39 chrX 83202559 83203047 -93771093 + L1ME2 LINE L1 5673 6155 -9 369 257 73 83 chrX 83203085 83203303 -93770837 + L1MC4 LINE L1 7826 8041 -1 483 290 97 43 chrX 83203357 83203564 -93770576 + MIR SINE MIR 13 230 -32 2348 106 0 0 chrX 83203742 83204043 -93770097 - AluSx SINE Alu -11 301 1 243 0 0 0 chrX 83204720 83204747 -93769393 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 451 339 42 53 chrX 83204748 83205203 -93768937 + L2 LINE L2 1797 2246 -1068 215 266 0 31 chrX 83205565 83205629 -93768511 + (TGAA)n Simple_repeat Simple_repeat 3 64 0 254 277 212 36 chrX 83205660 83205792 -93768348 + MIR SINE MIR 41 184 -27 5887 113 4 6 chrX 83206443 83207719 -93766421 + L1PA13 LINE L1 4896 6161 -2 709 298 78 28 chrX 83207724 83208157 -93765983 - L1MC/D LINE L1 -2099 5709 5255 462 208 27 13 chrX 83208212 83208361 -93765779 - L1MCa LINE L1 -4818 1608 1458 3843 149 3 0 chrX 83208547 83209178 -93764962 - L1PA13 LINE L1 -3 6160 5528 351 307 65 52 chrX 83209453 83209606 -93764534 - L1ME3A LINE L1 -92 6078 5924 367 255 85 39 chrX 83209649 83209695 -93764445 - L1ME3A LINE L1 -217 5947 5905 1382 243 45 63 chrX 83209695 83210222 -93763918 - MLT2B1 LTR ERVL -2 518 1 367 255 85 39 chrX 83210222 83210423 -93763717 - L1ME3A LINE L1 -259 5905 5686 17960 168 75 13 chrX 83210438 83213887 -93760253 - L1M1 LINE L1 -3895 3670 9 22 35 0 0 chrX 83213938 83213967 -93760173 + AT_rich Low_complexity Low_complexity 1 29 0 617 231 45 0 chrX 83214019 83214153 -93759987 - MIR SINE MIR -36 226 87 23 0 0 0 chrX 83214481 83214504 -93759636 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chrX 83214670 83214715 -93759425 + AT_rich Low_complexity Low_complexity 1 45 0 905 268 77 65 chrX 83214911 83215110 -93759030 - L1MC/D LINE L1 -1079 5067 4872 1334 200 79 45 chrX 83215110 83215465 -93758675 + MER93b LTR ERV1 3 369 -4 2240 117 0 0 chrX 83215467 83215774 -93758366 - AluSc SINE Alu -2 307 1 905 268 77 65 chrX 83215774 83216325 -93757815 - L1MC/D LINE L1 -1274 4872 4305 1563 238 142 12 chrX 83216341 83216842 -93757298 - L1ME1 LINE L1 -6 6160 5595 957 205 0 0 chrX 83216842 83216998 -93757142 - AluJb SINE Alu -23 289 134 282 141 47 47 chrX 83216999 83217063 -93757077 - L1ME1 LINE L1 -558 5608 5545 2921 189 54 5 chrX 83217065 83217658 -93756482 + MER67B LTR ERV1 13 634 -27 2472 57 0 3 chrX 83217700 83217999 -93756141 - AluY SINE Alu -13 298 1 1967 229 73 81 chrX 83217999 83218051 -93756089 - L1ME1 LINE L1 -741 5425 5374 2053 188 36 9 chrX 83218051 83218472 -93755668 - MSTB1 LTR MaLR 0 432 1 1967 229 73 81 chrX 83218472 83219478 -93754662 - L1ME1 LINE L1 -792 5374 4384 787 271 107 29 chrX 83219520 83220070 -93754070 - L1ME1 LINE L1 -2341 3805 3213 695 213 0 0 chrX 83220807 83220929 -93753211 - FLAM_A SINE Alu -10 123 2 701 316 78 0 chrX 83220999 83221217 -93752923 + MIR SINE MIR 2 236 -26 21 0 0 0 chrX 83221472 83221493 -93752647 + AT_rich Low_complexity Low_complexity 1 21 0 1562 130 77 69 chrX 83221493 83221656 -93752484 - L1MA7 LINE L1 -4 6287 6127 2095 112 27 0 chrX 83221656 83221952 -93752188 - AluSx SINE Alu -8 304 1 1562 130 77 69 chrX 83221952 83222150 -93751990 - L1MA7 LINE L1 -164 6127 5923 1271 81 0 0 chrX 83222169 83222330 -93751810 + AluSp SINE Alu 135 295 -18 544 234 28 21 chrX 83223484 83223625 -93750515 - MIR SINE MIR -9 253 112 1024 163 12 17 chrX 83223697 83223869 -93750271 + MER2 DNA MER2_type 2 172 -173 350 178 0 41 chrX 83223955 83224028 -93750112 + MER2 DNA MER2_type 268 337 -8 242 246 18 0 chrX 83224078 83224135 -93750005 - MLT1I LTR MaLR -58 351 294 22 0 0 0 chrX 83224902 83224924 -93749216 + AT_rich Low_complexity Low_complexity 1 22 0 1063 246 82 33 chrX 83225971 83226479 -93747661 - MLT1F1 LTR MaLR -2 565 1 332 338 101 49 chrX 83226646 83227249 -93746891 - L2 LINE L2 -30 3242 2616 510 303 0 0 chrX 83227329 83227474 -93746666 + MIR SINE MIR 118 262 0 298 328 30 30 chrX 83227489 83227620 -93746520 - L2 LINE L2 -672 2642 2512 21 36 0 0 chrX 83227847 83227875 -93746265 + AT_rich Low_complexity Low_complexity 1 28 0 2012 195 19 48 chrX 83228188 83228664 -93745476 + MLT1D LTR MaLR 44 505 0 23 0 0 0 chrX 83228689 83228712 -93745428 + AT_rich Low_complexity Low_complexity 1 23 0 705 170 13 25 chrX 83228714 83228873 -93745267 - L1MB8 LINE L1 -1 6177 6021 231 244 0 0 chrX 83228991 83229032 -93745108 + MSTB1 LTR MaLR 137 177 -255 490 239 46 54 chrX 83229076 83229249 -93744891 + MSTB1 LTR MaLR 175 332 -94 2438 256 79 70 chrX 83229294 83229774 -93744366 - L1M4c LINE L1 -4599 2045 1571 2623 24 7 0 chrX 83229774 83230071 -93744069 - AluY SINE Alu -12 299 1 2438 256 79 70 chrX 83230071 83231449 -93742691 - L1M4c LINE L1 -5073 1571 108 3726 147 59 29 chrX 83231495 83232022 -93742118 + Tigger3(Golem) DNA MER2_type 1 556 -2473 2120 124 3 0 chrX 83232022 83232321 -93741819 + AluSq SINE Alu 1 300 -13 3726 147 59 29 chrX 83232321 83232488 -93741652 + Tigger3(Golem) DNA MER2_type 556 716 -2313 * 4223 121 37 24 chrX 83232480 83232942 -93741198 + Tigger3(Golem) DNA MER2_type 1918 2398 -631 718 198 0 0 chrX 83232942 83233087 -93741053 + FLAM_A SINE Alu 1 145 0 4223 121 37 24 chrX 83233087 83233376 -93740764 + Tigger3(Golem) DNA MER2_type 2398 2682 -347 2755 85 39 8 chrX 83233376 83233765 -93740375 + MLT2A1 LTR ERVL 1 401 -43 267 113 25 50 chrX 83233765 83233845 -93740295 + (TA)n Simple_repeat Simple_repeat 2 79 0 346 54 0 26 chrX 83233848 83233920 -93740220 + MLT2A2 LTR ERVL 390 453 0 * 1743 130 3 7 chrX 83233920 83234201 -93739939 + Tigger3(Golem) DNA MER2_type 2677 2956 -73 559 206 23 15 chrX 83234316 83234447 -93739693 - MLT1D LTR MaLR -322 183 52 406 259 65 0 chrX 83234490 83234629 -93739511 - L1MDa LINE L1 -4105 2435 2288 * 1833 241 71 18 chrX 83234627 83235245 -93738895 - L1MDa LINE L1 -4993 1550 900 301 330 11 85 chrX 83235439 83235615 -93738525 - L1MDa LINE L1 -5969 571 409 21 57 0 0 chrX 83235750 83235785 -93738355 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chrX 83235831 83235866 -93738274 + AT_rich Low_complexity Low_complexity 1 35 0 2219 214 41 20 chrX 83236145 83236635 -93737505 + MLT1D LTR MaLR 1 500 -5 22 0 0 0 chrX 83236810 83236832 -93737308 + AT_rich Low_complexity Low_complexity 1 22 0 199 237 0 0 chrX 83237000 83237038 -93737102 + MIR SINE MIR 13 50 -212 1693 164 84 9 chrX 83237075 83237410 -93736730 + MER50 LTR ERV1 1 360 -374 259 203 17 17 chrX 83237413 83237472 -93736668 - MER50 LTR ERV1 -207 527 469 1332 143 0 103 chrX 83237611 83237708 -93736432 + L1PB1 LINE L1 5880 5985 -166 2254 121 0 6 chrX 83237708 83238023 -93736117 + AluSq SINE Alu 1 313 0 1332 143 0 103 chrX 83238023 83238226 -93735914 + L1PB1 LINE L1 5985 6149 -2 8783 112 20 10 chrX 83238241 83239634 -93734506 + MER4-int LTR ERV1 3372 4778 -237 474 217 62 15 chrX 83239763 83239929 -93734211 + LTR1B LTR ERV1 34 217 -568 640 193 42 42 chrX 83240119 83240285 -93733855 + LTR1B LTR ERV1 343 508 -318 1639 115 12 4 chrX 83240364 83240608 -93733532 + MER4-int LTR ERV1 6327 6572 -26 447 220 11 0 chrX 83240608 83240699 -93733441 - L1MC3 LINE L1 -431 7354 7263 2803 144 7 42 chrX 83240699 83241360 -93732780 - LTR8A LTR ERV1 0 727 1 445 211 8 62 chrX 83241362 83241375 -93732765 - L1MC3 LINE L1 -522 7263 7251 4076 128 21 51 chrX 83241375 83242087 -93732053 - LTR8 LTR ERV1 0 691 1 445 211 8 62 chrX 83242087 83242201 -93731939 - L1MC3 LINE L1 -534 7251 7143 * 1353 140 4 20 chrX 83242190 83242442 -93731698 - L1MB3 LINE L1 -271 5912 5691 1030 244 62 15 chrX 83242452 83242776 -93731364 - L1MC3 LINE L1 -639 7146 6808 1469 104 189 31 chrX 83242776 83243057 -93731083 - AluSg SINE Alu 0 322 1 2072 136 23 6 chrX 83243112 83243466 -93730674 - L1MA1 LINE L1 0 6302 5943 564 81 0 0 chrX 83243467 83243541 -93730599 - L1MA1 LINE L1 -708 5594 5521 191 162 68 0 chrX 83244057 83244131 -93730009 + GA-rich Low_complexity Low_complexity 6 84 0 419 356 66 61 chrX 83244496 83244923 -93729217 + L2 LINE L2 2843 3271 -1 218 339 37 55 chrX 83246164 83246273 -93727867 - MIR3 SINE MIR -21 187 81 5496 223 34 20 chrX 83246317 83248975 -93725165 - L1PB4 LINE L1 -1 6212 3594 180 111 0 0 chrX 83248975 83249002 -93725138 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5496 223 34 20 chrX 83249002 83249558 -93724582 - L1PB4 LINE L1 -2619 3594 691 301 349 28 42 chrX 83249648 83249863 -93724277 - L1PB4 LINE L1 -5644 560 349 1960 89 76 32 chrX 83250447 83250762 -93723378 + MER4C LTR ERV1 137 465 0 22 0 0 0 chrX 83252331 83252353 -93721787 + AT_rich Low_complexity Low_complexity 1 22 0 3628 123 34 21 chrX 83252472 83253138 -93721002 + MER4E LTR ERV1 1 766 0 520 173 32 8 chrX 83253392 83253505 -93720635 + MLT1B LTR MaLR 263 390 0 186 319 0 64 chrX 83254330 83254424 -93719716 + L2 LINE L2 3221 3308 -5 2047 116 31 7 chrX 83255160 83255453 -93718687 - AluSx SINE Alu -12 300 1 2530 53 3 0 chrX 83256222 83256526 -93717614 - AluY SINE Alu -6 305 1 333 125 0 0 chrX 83257487 83257543 -93716597 + (TG)n Simple_repeat Simple_repeat 2 57 0 1321 183 6 78 chrX 83257563 83257581 -93716559 - L1P LINE L1 -1111 5035 5017 5419 148 22 4 chrX 83257581 83258786 -93715354 - L1PA15 LINE L1 -1 6164 4946 2173 203 19 64 chrX 83258786 83259366 -93714774 + MLT2B3 LTR ERVL 1 554 0 1321 183 6 78 chrX 83259366 83259668 -93714472 - L1P LINE L1 -1127 5019 4737 234 313 73 53 chrX 83259799 83259949 -93714191 + MLT1K LTR MaLR 12 164 -424 260 140 40 0 chrX 83260345 83260395 -93713745 + L2 LINE L2 3256 3307 -6 2063 122 152 8 chrX 83260646 83261014 -93713126 + MSTA LTR MaLR 8 428 0 8397 172 26 16 chrX 83261016 83262578 -93711562 + MSTA-int LTR MaLR 3 1580 0 1892 141 152 11 chrX 83262578 83262953 -93711187 + MSTA LTR MaLR 1 428 0 730 308 31 9 chrX 83263108 83263335 -93710805 + MIR SINE MIR 4 235 -27 1923 163 34 3 chrX 83263643 83263993 -93710147 - MER46B DNA MER2_type 0 236 1 208 293 154 0 chrX 83264093 83264216 -93709924 + L2 LINE L2 3166 3307 -6 718 364 57 22 chrX 83264368 83265006 -93709134 + L2 LINE L2 2430 3104 -168 316 264 141 9 chrX 83265037 83265201 -93708939 + MIR SINE MIR 38 262 0 22 35 0 0 chrX 83265444 83265473 -93708667 + AT_rich Low_complexity Low_complexity 1 29 0 252 143 0 0 chrX 83267424 83267466 -93706674 + (CA)n Simple_repeat Simple_repeat 1 42 0 259 130 0 0 chrX 83267633 83267679 -93706461 + MADE1 DNA Mariner 1 46 -34 2092 93 7 0 chrX 83268323 83268601 -93705539 - AluSg SINE Alu -1 309 30 207 277 0 0 chrX 83268848 83268913 -93705227 + T-rich Low_complexity Low_complexity 1 65 0 353 243 0 0 chrX 83268919 83268989 -93705151 + L2 LINE L2 3200 3269 -3 507 308 111 30 chrX 83269238 83269472 -93704668 + MIR SINE MIR 7 259 -3 479 320 58 6 chrX 83269492 83269664 -93704476 - MIR SINE MIR -79 183 3 189 304 152 11 chrX 83269823 83269915 -93704225 + MIR SINE MIR 48 152 -110 265 288 186 28 chrX 83269931 83270108 -93704032 + MIR SINE MIR 48 252 -10 224 30 30 0 chrX 83271415 83271448 -93702692 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 633 242 0 0 chrX 83272027 83272159 -93701981 + FLAM_A SINE Alu 1 132 -1 22 56 0 0 chrX 83272210 83272246 -93701894 + AT_rich Low_complexity Low_complexity 1 36 0 690 130 0 0 chrX 83272435 83272535 -93701605 - LTR12 LTR ERV1 0 714 615 359 253 10 0 chrX 83272537 83272636 -93701504 - LTR30 LTR ERV1 -79 643 544 1585 88 3 166 chrX 83272636 83272967 -93701173 - LTR12 LTR ERV1 -437 277 1 2516 99 8 0 chrX 83273257 83273609 -93700531 - THE1A LTR MaLR 0 355 1 736 164 35 7 chrX 83274201 83274382 -93699758 + L1MA6 LINE L1 6055 6246 -54 841 263 0 5 chrX 83274383 83274588 -93699552 + L1ME2 LINE L1 5509 5712 -454 439 272 13 38 chrX 83274599 83274757 -93699383 + L1ME2 LINE L1 6002 6155 -9 2543 47 0 3 chrX 83274815 83275116 -93699024 + AluY SINE Alu 1 300 -11 735 143 0 0 chrX 83275117 83275243 -93698897 + L1PB3 LINE L1 6029 6154 0 375 343 112 12 chrX 83276274 83276381 -93697759 + MIR3 SINE MIR 22 154 -54 441 0 0 0 chrX 83276381 83276430 -93697710 + (TA)n Simple_repeat Simple_repeat 2 50 0 375 343 112 12 chrX 83276430 83276491 -93697649 + MIR3 SINE MIR 154 207 -1 446 252 212 13 chrX 83277700 83277851 -93696289 + MER5A DNA MER1_type 9 189 0 432 301 60 6 chrX 83277878 83278044 -93696096 + MER5B DNA MER1_type 4 178 0 1567 230 80 41 chrX 83278912 83279351 -93694789 - MLT1D LTR MaLR -6 499 44 255 333 11 0 chrX 83280066 83280153 -93693987 + L2 LINE L2 3225 3312 -1 6575 124 22 28 chrX 83280485 83281782 -93692358 + L1MA2 LINE L1 5017 6304 0 254 350 124 7 chrX 83283040 83283177 -93690963 + MER5A DNA MER1_type 12 164 -25 * 469 301 84 7 chrX 83283070 83283213 -93690927 - MER5A DNA MER1_type -35 154 1 609 269 81 0 chrX 83283222 83283382 -93690758 + MER5B DNA MER1_type 3 175 -3 387 196 100 45 chrX 83284069 83284179 -93689961 - L1MC4 LINE L1 -1 8041 7900 315 0 0 0 chrX 83284197 83284232 -93689908 + (CA)n Simple_repeat Simple_repeat 2 36 0 1886 136 56 6 chrX 83284233 83284557 -93689583 - MER2 DNA MER2_type -1 343 4 3333 139 28 2 chrX 83284560 83285100 -93689040 + MER41C LTR ERV1 1 554 0 441 0 0 0 chrX 83285103 83285152 -93688988 + (CA)n Simple_repeat Simple_repeat 2 50 0 810 249 20 10 chrX 83285184 83285381 -93688759 - L1MC4a LINE L1 -1220 6588 6390 267 54 0 0 chrX 83285763 83285800 -93688340 + (TG)n Simple_repeat Simple_repeat 2 38 0 338 287 58 46 chrX 83286311 83286485 -93687655 + MIR SINE MIR 87 262 0 188 184 132 0 chrX 83287483 83287521 -93686619 + MIR SINE MIR 2 44 -218 254 325 77 26 chrX 83287966 83288083 -93686057 - MIR SINE MIR -63 145 23 601 324 36 5 chrX 83289228 83289447 -93684693 - MIR SINE MIR -32 230 5 195 328 94 0 chrX 83289571 83289635 -93684505 - L2 LINE L2 -52 3220 3151 595 298 75 48 chrX 83291208 83291460 -93682680 + MIR SINE MIR 4 262 0 621 221 62 7 chrX 83292279 83292424 -93681716 + MIR3 SINE MIR 47 199 -9 261 0 0 0 chrX 83292615 83292644 -93681496 + (TG)n Simple_repeat Simple_repeat 2 30 0 230 279 13 0 chrX 83292646 83292725 -93681415 + GA-rich Low_complexity Low_complexity 2 81 0 229 203 80 109 chrX 83293667 83293805 -93680335 + MIR SINE MIR 129 262 0 5328 120 0 4 chrX 83293939 83294716 -93679424 + L1PA15 LINE L1 5389 6162 -3 5028 217 39 66 chrX 83294740 83295478 -93678662 - L1MD2 LINE L1 -1 6358 5602 2264 101 3 0 chrX 83295478 83295774 -93678366 - AluSp SINE Alu -16 297 1 5028 217 39 66 chrX 83295774 83297233 -93676907 - L1MD2 LINE L1 -757 5602 4105 414 57 0 0 chrX 83297233 83297286 -93676854 + (TG)n Simple_repeat Simple_repeat 2 54 0 5028 217 39 66 chrX 83297286 83297357 -93676783 - L1MD2 LINE L1 -2254 4105 4034 535 224 8 32 chrX 83297357 83297482 -93676658 - FLAM_A SINE Alu -11 122 1 5028 217 39 66 chrX 83297482 83298294 -93675846 - L1MD2 LINE L1 -2325 4034 3370 714 227 39 0 chrX 83298611 83298765 -93675375 + MIR SINE MIR 47 206 -56 2061 187 15 36 chrX 83299366 83299847 -93674293 - L1ME1 LINE L1 -29 6137 5672 383 323 39 112 chrX 83300070 83300330 -93673810 + L2 LINE L2 3020 3260 -12 397 308 137 22 chrX 83300929 83301156 -93672984 + MIR SINE MIR 3 255 -7 661 138 0 0 chrX 83301266 83301375 -93672765 + L1PA11 LINE L1 6065 6173 -1 332 286 183 0 chrX 83302141 83302267 -93671873 - L2 LINE L2 0 3272 3124 1448 249 20 18 chrX 83302290 83302683 -93671457 + MSTD LTR MaLR 3 396 0 973 153 0 0 chrX 83302756 83302919 -93671221 + L1MA9 LINE L1 5862 6024 -288 2755 133 18 37 chrX 83302937 83303449 -93670691 - L1PA14 LINE L1 -9 6152 5651 9934 194 16 11 chrX 83303460 83305514 -93668626 - L1PA14 LINE L1 -759 5387 3324 24289 165 10 22 chrX 83305522 83307992 -93666148 - L1PA10 LINE L1 -4 6479 3980 200 35 35 0 chrX 83307992 83308021 -93666119 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 24289 165 10 22 chrX 83308021 83308883 -93665257 - L1PA10 LINE L1 -2503 3980 3109 2145 108 0 10 chrX 83308883 83309201 -93664939 + AluSq SINE Alu 1 315 0 24289 165 10 22 chrX 83309201 83309638 -93664502 - L1PA10 LINE L1 -3374 3109 2668 2611 61 0 0 chrX 83309638 83309949 -93664191 - AluY SINE Alu 0 311 1 24289 165 10 22 chrX 83309949 83312057 -93662083 - L1PA10 LINE L1 -3815 2668 585 1862 246 6 2 chrX 83312476 83312983 -93661157 - L1PA14 LINE L1 -2804 3342 2834 250 172 31 16 chrX 83312986 83313050 -93661090 + L1MA9 LINE L1 6019 6083 -229 1782 191 32 57 chrX 83313051 83313490 -93660650 + MSTC LTR MaLR 1 428 0 306 235 78 0 chrX 83313493 83313595 -93660545 + L1MA9 LINE L1 6180 6289 -23 861 310 34 4 chrX 83314225 83314493 -93659647 + Charlie8 DNA MER1_type 1 276 -2141 284 383 70 0 chrX 83314645 83314760 -93659380 - MIR3 SINE MIR -49 159 37 2024 174 68 32 chrX 83315317 83315760 -93658380 - LTR2B LTR ERV1 0 490 32 2659 60 6 6 chrX 83317200 83317551 -93656589 + L1PA8 LINE L1 5817 6167 -5 918 255 86 53 chrX 83317560 83317850 -93656290 - L1ME4a LINE L1 -69 6052 5736 2395 83 0 0 chrX 83317850 83318152 -93655988 - AluSc SINE Alu -7 302 1 918 255 86 53 chrX 83318152 83318370 -93655770 - L1ME4a LINE L1 -385 5736 5527 255 61 0 0 chrX 83318401 83318434 -93655706 + (TG)n Simple_repeat Simple_repeat 1 33 0 193 222 0 0 chrX 83318770 83318806 -93655334 - MIR SINE MIR -62 146 111 285 338 185 9 chrX 83318813 83319029 -93655111 + MIR SINE MIR 3 256 -6 * 345 312 104 8 chrX 83319016 83319141 -93654999 - MIR SINE MIR -106 156 20 529 304 95 81 chrX 83319378 83320042 -93654098 - L3 LINE CR1 -3 1574 902 1445 169 60 70 chrX 83320042 83320373 -93653767 - MLT1A2 LTR MaLR -46 328 1 189 0 0 0 chrX 83320791 83320812 -93653328 + (T)n Simple_repeat Simple_repeat 1 21 0 274 269 0 0 chrX 83321124 83321191 -93652949 + (CATA)n Simple_repeat Simple_repeat 1 67 0 219 106 21 21 chrX 83321715 83321762 -93652378 + (CAAAAA)n Simple_repeat Simple_repeat 3 49 0 276 238 0 0 chrX 83322605 83322668 -93651472 + GA-rich Low_complexity Low_complexity 1 63 0 22 80 0 0 chrX 83322832 83322882 -93651258 + AT_rich Low_complexity Low_complexity 1 50 0 3534 189 87 27 chrX 83323805 83324956 -93649184 - L1MB7 LINE L1 -17 6167 4945 2625 244 36 17 chrX 83324952 83325784 -93648356 - L1MB7 LINE L1 -1408 4738 3891 * 3999 174 32 14 chrX 83325789 83326656 -93647484 - L1MC2 LINE L1 -11 6333 5451 1158 225 37 48 chrX 83326667 83327041 -93647099 - L1MC2 LINE L1 -897 5249 4880 2224 243 85 13 chrX 83327087 83327839 -93646301 - L1MB7 LINE L1 -2292 3854 3035 2188 102 14 0 chrX 83327839 83328134 -93646006 - AluSq SINE Alu -14 299 1 2224 243 85 13 chrX 83328134 83328214 -93645926 - L1MB7 LINE L1 -3111 3035 2962 7814 121 2 8 chrX 83328219 83330215 -93643925 - L1PA8A LINE L1 -1 6130 4145 1711 85 0 0 chrX 83330215 83330438 -93643702 + L1PA8A LINE L1 3954 4176 -1970 880 232 70 81 chrX 83330444 83330913 -93643227 - L1MB7 LINE L1 -3196 2950 2487 216 158 0 0 chrX 83330975 83331013 -93643127 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 12106 254 30 48 chrX 83331146 83338370 -93635770 - L1PA16 LINE L1 -10 7594 9 1267 240 0 30 chrX 83338640 83338944 -93635196 - AluJo SINE Alu -17 295 1 216 0 0 0 chrX 83339063 83339087 -93635053 + (TA)n Simple_repeat Simple_repeat 2 25 0 1599 197 54 3 chrX 83339281 83339596 -93634544 + MER2 DNA MER2_type 15 345 0 201 310 17 0 chrX 83339810 83339868 -93634272 - L3 LINE CR1 -979 598 540 511 204 14 14 chrX 83341042 83341189 -93632951 - L1MB8 LINE L1 -1 6177 6031 236 186 29 86 chrX 83342969 83343039 -93631101 - MIR SINE MIR -12 250 185 1399 161 172 7 chrX 83343040 83343331 -93630809 + MSTA LTR MaLR 1 339 -89 1758 129 69 45 chrX 83343340 83343591 -93630549 + MER61A LTR ERV1 2 264 -79 2726 32 0 0 chrX 83343591 83343899 -93630241 - AluY SINE Alu -3 308 1 1758 129 69 45 chrX 83343899 83343981 -93630159 + MER61A LTR ERV1 264 343 0 2266 190 35 46 chrX 83343981 83344614 -93629526 + MER61A-int LTR ERV1 1 707 -4510 272 72 0 130 chrX 83344583 83344652 -93629488 + MER61-int LTR ERV1 2234 2293 -5244 * 456 66 132 13 chrX 83344689 83344765 -93629375 + MER61-int LTR ERV1 1411 1495 -3722 * 2095 83 23 60 chrX 83344759 83345110 -93629030 + MER61-int LTR ERV1 1718 2055 -3162 * 19866 100 29 11 chrX 83345104 83347957 -93626183 + MER61-int LTR ERV1 2313 5217 0 268 349 47 0 chrX 83347991 83348077 -93626063 - MIR SINE MIR -170 92 3 603 325 30 30 chrX 83349083 83349314 -93624826 + MIR SINE MIR 17 247 -15 1545 139 0 4 chrX 83349468 83349705 -93624435 - AluJo SINE Alu -9 303 68 3617 70 26 22 chrX 83349730 83350228 -93623912 - LTR3b LTR ERVK 0 500 1 372 247 0 0 chrX 83350228 83350301 -93623839 - AluJo SINE Alu -228 74 2 893 293 4 16 chrX 83351662 83351915 -93622225 + MIR SINE MIR 12 261 -1 21 0 0 0 chrX 83352255 83352276 -93621864 + AT_rich Low_complexity Low_complexity 1 21 0 2388 161 26 9 chrX 83352837 83353258 -93620882 - MSTA LTR MaLR 0 428 1 10689 226 19 7 chrX 83353536 83353630 -93620510 + L1PA16 LINE L1 2354 2445 -3721 315 0 0 0 chrX 83353630 83353665 -93620475 + (TA)n Simple_repeat Simple_repeat 2 36 0 10689 226 19 7 chrX 83353665 83357332 -93616808 + L1PA16 LINE L1 2445 6157 -9 454 345 69 14 chrX 83358272 83358547 -93615593 - L2 LINE L2 -340 2974 2685 201 308 159 28 chrX 83359643 83359825 -93614315 - L2 LINE L2 -778 2536 2331 183 42 0 0 chrX 83359883 83359907 -93614233 + (A)n Simple_repeat Simple_repeat 1 24 0 520 286 49 5 chrX 83360661 83360846 -93613294 - MIR SINE MIR -3 259 67 464 268 76 78 chrX 83360859 83361309 -93612831 + MLT1I LTR MaLR 1 407 -2 9856 196 19 10 chrX 83361598 83362677 -93611463 - L1MA4A LINE L1 -24 6981 5913 180 0 0 0 chrX 83362677 83362697 -93611443 + (TG)n Simple_repeat Simple_repeat 1 20 0 9856 196 19 10 chrX 83362697 83363798 -93610342 - L1MA4A LINE L1 -1092 5913 4823 1814 224 33 14 chrX 83363798 83364222 -93609918 - MSTB1 LTR MaLR 0 432 1 9856 196 19 10 chrX 83364222 83365260 -93608880 - L1MA4A LINE L1 -2182 4823 3670 2505 260 56 3 chrX 83365261 83365900 -93608240 - L1MA4A LINE L1 -5567 1282 610 2031 257 159 3 chrX 83365982 83366655 -93607485 - L1MA4A LINE L1 -6059 790 13 1587 213 50 37 chrX 83367338 83367742 -93606398 - LTR2 LTR ERV1 0 449 41 61349 48 3 6 chrX 83367831 83375665 -93598475 - HERVE LTR ERV1 -1 7812 1 1738 184 44 42 chrX 83375665 83376073 -93598067 - LTR2 LTR ERV1 0 449 41 2293 122 3 0 chrX 83376370 83376682 -93597458 - AluSq SINE Alu 0 313 1 210 71 0 0 chrX 83377747 83377775 -93596365 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 359 267 79 20 chrX 83377778 83377879 -93596261 - L2 LINE L2 -16 3297 3191 24 32 0 0 chrX 83378642 83378673 -93595467 + AT_rich Low_complexity Low_complexity 1 31 0 661 254 92 0 chrX 83378877 83379050 -93595090 - MIR SINE MIR -29 233 45 380 302 97 65 chrX 83379061 83379268 -93594872 + HAL1b LINE L1 100 299 -1049 1468 66 33 14 chrX 83379268 83379479 -93594661 - L1PA7 LINE L1 0 6154 5940 380 302 97 65 chrX 83379479 83379767 -93594373 + HAL1b LINE L1 299 611 -737 1053 252 8 13 chrX 83381060 83381298 -93592842 + MIR SINE MIR 5 241 -21 615 266 11 11 chrX 83383612 83383789 -93590351 - MER5B DNA MER1_type 0 178 2 189 229 29 71 chrX 83384044 83384114 -93590026 - MIR SINE MIR -178 84 18 190 297 16 31 chrX 83384134 83384198 -93589942 - MER5A DNA MER1_type -15 174 112 1491 227 105 65 chrX 83384298 83384995 -93589145 + MER50 LTR ERV1 10 734 0 471 169 68 8 chrX 83384997 83385115 -93589025 + MER50-int LTR ERV1 4 128 -7077 * 2722 174 58 53 chrX 83385102 83386329 -93587811 + MER50-int LTR ERV1 389 4781 -436 524 199 27 0 chrX 83386322 83386435 -93587705 + MER50-int LTR ERV1 992 1080 -3800 * 340 78 78 0 chrX 83386432 83386483 -93587657 + MER50-int LTR ERV1 3336 3390 -3815 * 1752 158 97 27 chrX 83386487 83386923 -93587217 + MER50-int LTR ERV1 4866 7202 -3 1784 216 107 62 chrX 83386924 83387618 -93586522 + MER50 LTR ERV1 10 734 0 383 293 0 0 chrX 83387946 83388045 -93586095 - MIR SINE MIR -5 257 159 567 218 146 15 chrX 83388045 83388251 -93585889 - MER67D LTR ERV1 0 514 282 267 182 0 0 chrX 83388229 83388284 -93585856 - MER67C LTR ERV1 -307 403 349 * 1218 188 29 25 chrX 83388289 83388444 -93585696 - AluJo SINE Alu -24 288 130 603 74 0 0 chrX 83388444 83388525 -93585615 + (TA)n Simple_repeat Simple_repeat 1 81 0 1218 188 29 25 chrX 83388525 83388614 -93585526 - AluJo SINE Alu -182 130 43 14918 184 35 9 chrX 83388615 83391884 -93582256 - L1 LINE L1 -3680 3885 532 * 15426 172 10 7 chrX 83391877 83394656 -93579484 - L1M1 LINE L1 -4766 2799 13 933 113 0 35 chrX 83394917 83395059 -93579081 + AluSp/q SINE Alu 176 312 -1 1418 165 35 9 chrX 83395431 83395746 -93578394 - MER33 DNA MER1_type -1 323 1 28 29 0 0 chrX 83396759 83396794 -93577346 + AT_rich Low_complexity Low_complexity 1 35 0 490 130 56 19 chrX 83396844 83396952 -93577188 - L1MA4A LINE L1 -2 6301 6190 844 122 144 6 chrX 83396952 83397133 -93577007 + L1MA4A LINE L1 5981 6186 -117 340 275 96 56 chrX 83397135 83397386 -93576754 - MLT1L LTR MaLR -7 608 348 288 0 0 0 chrX 83398762 83398794 -93575346 + (TG)n Simple_repeat Simple_repeat 2 33 0 752 202 85 38 chrX 83398804 83399121 -93575019 - MER33 DNA MER1_type 0 324 1 522 278 141 34 chrX 83399960 83400194 -93573946 + MIR SINE MIR 2 260 -2 2442 135 3 0 chrX 83400538 83400901 -93573239 + THE1B LTR MaLR 1 364 0 10125 123 30 5 chrX 83400901 83402443 -93571697 + THE1B-int LTR MaLR 1 1580 0 2456 131 14 0 chrX 83402443 83402802 -93571338 + THE1B LTR MaLR 1 364 0 24 91 0 0 chrX 83402890 83402956 -93571184 + AT_rich Low_complexity Low_complexity 1 66 0 2288 184 19 7 chrX 83403185 83403604 -93570536 - MSTB LTR MaLR 0 426 3 6461 224 63 8 chrX 83403606 83405167 -93568973 - MSTB-int LTR MaLR 0 1651 5 2394 170 5 37 chrX 83405171 83405606 -93568534 - MSTB LTR MaLR 0 426 6 414 317 80 41 chrX 83405717 83406080 -93568060 + L1M4 LINE L1 4536 4912 -1234 226 191 15 15 chrX 83406333 83406401 -93567739 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 33 0 0 chrX 83407622 83407652 -93566488 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 83407977 83408000 -93566140 + AT_rich Low_complexity Low_complexity 1 23 0 2339 107 0 3 chrX 83408077 83408387 -93565753 - AluSg SINE Alu -1 309 1 24 85 0 0 chrX 83409327 83409386 -93564754 + AT_rich Low_complexity Low_complexity 1 59 0 317 250 0 13 chrX 83409428 83409504 -93564636 - MER45 DNA AcHobo 0 1581 1507 11433 184 33 18 chrX 83409505 83411811 -93562329 + L1M1 LINE L1 13 2382 -5183 6993 63 3 3 chrX 83411811 83412489 -93561651 - L1PA8 LINE L1 -14 6158 5487 2295 76 13 23 chrX 83412489 83412790 -93561350 - AluSc SINE Alu -11 298 1 6993 63 3 3 chrX 83412790 83413459 -93560681 - L1PA8 LINE L1 -684 5488 4820 11433 184 33 18 chrX 83413459 83414562 -93559578 + L1M1 LINE L1 2382 3467 -4098 6627 217 43 8 chrX 83414571 83415882 -93558258 + L1M1 LINE L1 3600 4983 -2582 243 0 0 0 chrX 83415882 83415909 -93558231 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6627 217 43 8 chrX 83415909 83416255 -93557885 + L1M1 LINE L1 4983 5315 -2250 204 40 0 0 chrX 83416933 83416958 -93557182 + (A)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chrX 83418018 83418032 -93556108 + (GA)n Simple_repeat Simple_repeat 1 42 0 252 0 0 0 chrX 83418032 83418060 -93556080 + (GA)n Simple_repeat Simple_repeat 1 28 0 1118 149 21 16 chrX 83418093 83418281 -93555859 + MER5A DNA MER1_type 1 189 0 196 281 125 42 chrX 83418293 83418389 -93555751 - MER5B DNA MER1_type -73 105 2 * 213 338 14 0 chrX 83418389 83418459 -93555681 - MIR3 SINE MIR -47 161 91 1014 221 4 12 chrX 83419062 83419306 -93554834 + L1M1 LINE L1 5302 5543 -2022 2486 111 11 6 chrX 83419306 83419668 -93554472 + THE1B LTR MaLR 1 364 0 3268 112 112 30 chrX 83419668 83420238 -93553902 + THE1B-int LTR MaLR 1 617 -963 1344 84 0 0 chrX 83420235 83420413 -93553727 + L1M1 LINE L1 5379 5556 -746 * 258 240 13 13 chrX 83421027 83421102 -93553038 - HAL1b LINE L1 -44 1304 1230 8786 178 21 16 chrX 83421134 83421511 -93552629 - L1PB4 LINE L1 -2 6154 5780 381 22 0 0 chrX 83421511 83421557 -93552583 + (CA)n Simple_repeat Simple_repeat 2 47 0 8786 178 21 16 chrX 83421557 83423895 -93550245 - L1PB4 LINE L1 -376 5780 3440 300 324 28 21 chrX 83424910 83425052 -93549088 + MIR SINE MIR 120 262 0 646 233 0 0 chrX 83425081 83425214 -93548926 - L1PB4 LINE L1 -2 6154 6022 1529 261 14 0 chrX 83425658 83426018 -93548122 - MLT1A1 LTR MaLR 0 365 1 1738 151 14 11 chrX 83426768 83427067 -93547073 - AluSx SINE Alu 0 302 3 394 333 9 18 chrX 83427653 83427767 -93546373 - MIR SINE MIR -80 128 16 245 345 12 0 chrX 83427936 83428020 -93546120 - L3 LINE CR1 -410 1167 1083 354 320 10 0 chrX 83428082 83428179 -93545961 - MIR SINE MIR -79 183 86 322 234 0 6 chrX 83429472 83429610 -93544530 - MER3 DNA MER1_type 0 209 1 464 84 70 0 chrX 83429857 83429928 -93544212 - Tigger5 DNA MER2_type -79 2244 2169 399 229 0 83 chrX 83429927 83430023 -93544117 - Tigger5 DNA MER2_type -2129 194 107 * 2379 76 3 0 chrX 83480023 83480339 -93493801 + L1PA7 LINE L1 5833 6149 -5 1023 194 97 24 chrX 83480343 83480632 -93493508 + L1MA7 LINE L1 5953 6262 -29 224 98 0 24 chrX 83480660 83480701 -93493439 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chrX 83481278 83481300 -93492840 + AT_rich Low_complexity Low_complexity 1 22 0 2243 61 4 0 chrX 83482024 83482326 -93491814 + AluY SINE Alu 1 303 0 537 168 25 17 chrX 83482523 83482642 -93491498 - L1MA9 LINE L1 -13 6299 6180 1092 229 29 0 chrX 83482644 83482888 -93491252 - L1MA9 LINE L1 -231 6081 5831 555 99 42 0 chrX 83482951 83483066 -93491074 - L1MA9 LINE L1 -796 5350 5232 1627 172 26 19 chrX 83483181 83483489 -93490651 + MER52C-int LTR ERV1 1189 1498 -5593 780 171 6 43 chrX 83483488 83483652 -93490488 + MER52C-int LTR ERV1 990 1147 -4799 * 2272 183 56 31 chrX 83483654 83484307 -93489833 + MER52C-int LTR ERV1 1431 1992 -3594 * 4494 152 52 30 chrX 83484299 83485900 -93488240 + MER52C-int LTR ERV1 592 4514 -3023 1310 118 9 62 chrX 83485902 83486113 -93488027 + MER52C-int LTR ERV1 6892 7091 0 3496 206 30 15 chrX 83486113 83486847 -93487293 + MER52C LTR ERV1 1 745 -533 32 57 0 0 chrX 83487047 83487100 -93487040 + AT_rich Low_complexity Low_complexity 1 53 0 2071 113 3 0 chrX 83488102 83488414 -93485726 + AluSq SINE Alu 1 313 0 680 333 44 27 chrX 83488863 83489160 -93484980 - MLT1J2 LTR MaLR -148 302 1 637 321 112 36 chrX 83490719 83491192 -93482948 - LTR33 LTR ERVL -11 510 2 469 187 110 35 chrX 83491254 83491400 -93482740 + L1MB8 LINE L1 6027 6184 0 2045 139 3 3 chrX 83491512 83491821 -93482319 - AluSx SINE Alu -3 309 1 5725 153 14 25 chrX 83491857 83493051 -93481089 + L1MA7 LINE L1 4970 6151 -140 1404 205 6 60 chrX 83493051 83493368 -93480772 + AluJo SINE Alu 1 300 -2 5725 153 14 25 chrX 83493368 83493507 -93480633 + L1MA7 LINE L1 6151 6290 -1 1986 123 0 4 chrX 83495019 83495295 -93478845 - AluSc SINE Alu -34 275 1 315 324 50 39 chrX 83495322 83495504 -93478636 - MIR SINE MIR -42 220 37 910 265 49 0 chrX 83495824 83496047 -93478093 - MIR SINE MIR -28 234 1 363 278 214 0 chrX 83496047 83496167 -93477973 - MIR SINE MIR -114 148 2 817 230 0 72 chrX 83496217 83496452 -93477688 + MER20 DNA MER1_type 2 219 0 24 32 0 0 chrX 83496605 83496636 -93477504 + AT_rich Low_complexity Low_complexity 1 31 0 189 107 0 0 chrX 83497052 83497080 -93477060 + (ATG)n Simple_repeat Simple_repeat 1 28 0 524 293 40 77 chrX 83499373 83499490 -93474650 - L1ME4a LINE L1 -293 5828 5708 2249 79 0 0 chrX 83499490 83499769 -93474371 - AluSx SINE Alu -32 280 2 524 293 40 77 chrX 83499769 83500081 -93474059 - L1ME4a LINE L1 -413 5708 5415 255 271 0 0 chrX 83500368 83500453 -93473687 - L1ME4a LINE L1 -1100 5046 4962 3176 191 54 21 chrX 83500580 83501850 -93472290 - L1MA6 LINE L1 -291 6009 4693 8390 153 10 133 chrX 83501950 83503769 -93470371 - L1P1 LINE L1 -374 5781 4484 1994 129 27 7 chrX 83503769 83504064 -93470076 - AluSg SINE Alu -9 301 1 8390 153 10 133 chrX 83504064 83505192 -93468948 - L1P1 LINE L1 -1671 4484 3219 812 215 14 5 chrX 83505189 83505398 -93468742 + L1 LINE L1 2968 3178 -2968 * 340 378 25 25 chrX 83505398 83505594 -93468546 - L3 LINE CR1 -1021 556 361 21 36 0 0 chrX 83506465 83506493 -93467647 + AT_rich Low_complexity Low_complexity 1 28 0 395 333 112 61 chrX 83506833 83507732 -93466408 - L2 LINE L2 -181 3091 2147 2977 145 21 100 chrX 83508651 83509319 -93464821 + MER52C LTR ERV1 664 1278 0 2072 117 39 0 chrX 83509558 83509840 -93464300 + AluSc SINE Alu 1 293 -16 405 238 50 0 chrX 83509966 83510067 -93464073 - FRAM SINE Alu -8 168 63 264 235 44 52 chrX 83510720 83510856 -93463284 + L1M4 LINE L1 2182 2316 -3830 256 250 34 11 chrX 83510877 83510965 -93463175 + L1M4 LINE L1 2415 2504 -3642 228 135 0 0 chrX 83511010 83511047 -93463093 + (TA)n Simple_repeat Simple_repeat 2 38 0 2613 276 72 28 chrX 83511062 83512114 -93462026 + L1M4 LINE L1 2667 3796 -2350 2115 247 87 18 chrX 83512114 83512669 -93461471 - MLT1E LTR MaLR 0 593 1 2613 276 72 28 chrX 83512669 83512997 -93461143 + L1M4 LINE L1 3796 4108 -2038 1078 244 60 39 chrX 83513021 83513471 -93460669 - MLT1F1 LTR MaLR -27 540 3 275 143 63 16 chrX 83513473 83513536 -93460604 + L1M4 LINE L1 4114 4179 -1967 641 286 15 5 chrX 83513538 83513741 -93460399 + L1ME2 LINE L1 5951 6155 -9 472 284 70 76 chrX 83514182 83514696 -93459444 - L1M4 LINE L1 -2966 3180 2670 363 259 61 3 chrX 83514697 83514834 -93459306 - L1ME LINE L1 -431 5739 5596 1462 150 0 13 chrX 83514989 83515216 -93458924 - AluSg/x SINE Alu -18 292 69 2182 38 0 0 chrX 83515229 83515492 -93458648 - L1PA7 LINE L1 -149 6005 5743 1821 117 0 0 chrX 83515492 83515775 -93458365 + L1P LINE L1 4587 4869 -1277 33 25 0 0 chrX 83515979 83516019 -93458121 + AT_rich Low_complexity Low_complexity 1 40 0 396 223 85 23 chrX 83516134 83516264 -93457876 + MIR SINE MIR 125 262 0 681 319 23 5 chrX 83517085 83517301 -93456839 + MIR SINE MIR 30 249 -13 217 427 10 0 chrX 83517333 83517436 -93456704 - L2 LINE L2 -6 3266 3163 180 111 0 0 chrX 83517441 83517468 -93456672 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1242 246 58 12 chrX 83517699 83518045 -93456095 + MLT1A1 LTR MaLR 4 365 0 25 51 0 0 chrX 83518240 83518279 -93455861 + AT_rich Low_complexity Low_complexity 1 39 0 223 297 31 47 chrX 83518417 83518545 -93455595 - MIR SINE MIR 0 262 137 10707 204 28 8 chrX 83519321 83519701 -93454439 - L1M1 LINE L1 -743 6822 6451 2006 139 45 31 chrX 83519701 83520060 -93454080 - THE1B LTR MaLR 0 364 1 10668 119 16 2 chrX 83520060 83521618 -93452522 - THE1B-int LTR MaLR 0 1580 1 1958 123 71 31 chrX 83521618 83521968 -93452172 - THE1B LTR MaLR 0 364 1 10707 204 28 8 chrX 83521968 83524206 -93449934 - L1M1 LINE L1 -1113 6452 4245 4445 255 130 5 chrX 83524200 83526456 -93447684 - L1M1 LINE L1 -4584 2981 13 * 740 301 122 20 chrX 83526457 83526931 -93447209 + L2 LINE L2 2656 3171 -142 21 0 0 0 chrX 83526932 83526953 -93447187 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 83526986 83527016 -93447124 + AT_rich Low_complexity Low_complexity 1 30 0 927 41 74 0 chrX 83527086 83527208 -93446932 + L1PA8 LINE L1 5723 5853 -319 672 213 0 73 chrX 83527207 83527357 -93446783 - L1M1 LINE L1 -5663 1902 1764 * 6390 198 28 16 chrX 83527367 83528631 -93445509 - L1M1 LINE L1 -6286 1279 1 1699 116 72 7 chrX 83530275 83530567 -93443573 - L1PA13 LINE L1 -2 6161 5851 1606 126 12 8 chrX 83530567 83530821 -93443319 + L1P4 LINE L1 5337 5591 -570 193 400 0 19 chrX 83530821 83530926 -93443214 + L2 LINE L2 2999 3101 -171 249 57 0 0 chrX 83531025 83531060 -93443080 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chrX 83531090 83531114 -93443026 + (GA)n Simple_repeat Simple_repeat 1 24 0 296 119 17 0 chrX 83532750 83532809 -93441331 - L1MA8 LINE L1 0 6291 6232 1440 168 56 16 chrX 83532828 83533131 -93441009 - L1MA8 LINE L1 -39 6252 5938 5266 193 20 12 chrX 83533278 83535302 -93438838 - L1PA16 LINE L1 0 6166 4127 1820 148 36 7 chrX 83535937 83536240 -93437900 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 83536240 83536261 -93437879 + AT_rich Low_complexity Low_complexity 1 21 0 820 201 0 3 chrX 83536261 83536443 -93437697 - L1MA5A LINE L1 -10 6287 6101 3562 103 4 26 chrX 83536445 83537063 -93437077 + L1PB1 LINE L1 5187 5791 -360 323 92 0 83 chrX 83537063 83537183 -93436957 + (TA)n Simple_repeat Simple_repeat 1 110 0 2031 123 18 60 chrX 83537183 83537566 -93436574 + L1PB1 LINE L1 5782 6148 -3 2740 180 37 23 chrX 83537581 83538152 -93435988 - L1MA7 LINE L1 -177 6114 5536 2588 181 45 81 chrX 83538631 83539348 -93434792 - LTR8 LTR ERV1 0 691 1 21 36 0 0 chrX 83539973 83540001 -93434139 + AT_rich Low_complexity Low_complexity 1 28 0 332 276 122 50 chrX 83540104 83540525 -93433615 - L1MEc LINE L1 -3659 2556 2152 6423 191 28 3 chrX 83540658 83542028 -93432112 - L1MA7 LINE L1 -1480 4666 3263 4550 108 41 3 chrX 83542028 83542712 -93431428 - L1PA14 LINE L1 -2 6159 5450 270 29 0 0 chrX 83542714 83542748 -93431392 + L1P LINE L1 5319 5352 -816 1743 243 96 48 chrX 83542748 83543578 -93430562 + L1ME LINE L1 603 1472 -4924 556 289 58 14 chrX 83544456 83544802 -93429338 + L1ME LINE L1 5397 5891 -299 648 224 0 0 chrX 83544987 83545112 -93429028 - FLAM_A SINE Alu -8 125 1 1602 142 100 0 chrX 83545755 83546015 -93428125 + AluSg SINE Alu 1 286 -24 250 348 20 100 chrX 83546270 83546520 -93427620 + L2 LINE L2 2953 3182 -90 357 257 115 9 chrX 83546763 83546876 -93427264 + MIR SINE MIR 47 171 -91 728 149 8 0 chrX 83548686 83548807 -93425333 + L1PA10 LINE L1 6042 6163 -5 837 204 6 0 chrX 83548870 83549032 -93425108 + MER34B LTR ERV1 374 536 -29 326 330 116 14 chrX 83549112 83549543 -93424597 + L1M4 LINE L1 3082 3556 -2590 1654 102 12 8 chrX 83549645 83549891 -93424249 - AluSq SINE Alu -66 247 1 2188 284 103 30 chrX 83549891 83550873 -93423267 - L2 LINE L2 -234 3079 2014 21 57 0 0 chrX 83551008 83551043 -93423097 + AT_rich Low_complexity Low_complexity 1 35 0 346 211 28 0 chrX 83551186 83551257 -93422883 - MIR SINE MIR -2 260 188 457 308 80 48 chrX 83551270 83552042 -93422098 + L1M4 LINE L1 4050 4846 -1300 314 274 174 0 chrX 83552280 83552492 -93421648 + L1M4 LINE L1 5150 5398 -748 25 51 0 0 chrX 83552509 83552548 -93421592 + AT_rich Low_complexity Low_complexity 1 39 0 673 204 38 48 chrX 83552551 83552737 -93421403 + AluSg SINE Alu 1 184 -126 21 0 0 0 chrX 83553146 83553167 -93420973 + AT_rich Low_complexity Low_complexity 1 21 0 2666 246 86 32 chrX 83553946 83554846 -93419294 + L1MCb LINE L1 2 949 -5096 236 190 69 0 chrX 83554849 83554907 -93419233 + L1PA14 LINE L1 6095 6156 -5 2000 206 116 13 chrX 83555011 83555719 -93418421 + L1MCb LINE L1 946 1770 -4794 563 273 61 10 chrX 83555711 83555909 -93418231 - L1M4 LINE L1 -1745 4401 4194 * 3497 215 74 2 chrX 83555921 83556741 -93417399 - L1MB2 LINE L1 -8 6163 5285 284 241 23 0 chrX 83556742 83556829 -93417311 + L1MB2 LINE L1 5194 5282 -864 2135 174 69 42 chrX 83556923 83557429 -93416711 + MLT2B1 LTR ERVL 1 520 0 1463 204 28 11 chrX 83557800 83558085 -93416055 + AluJo SINE Alu 1 290 -22 13307 196 42 28 chrX 83558087 83560920 -93413220 + L1MA2 LINE L1 22 2894 -4671 233 196 0 0 chrX 83560915 83560966 -93413174 + L1MA2 LINE L1 4190 4240 -3325 * 1843 117 0 4 chrX 83560966 83561222 -93412918 + AluSq SINE Alu 39 293 -20 315 0 0 0 chrX 83561227 83561262 -93412878 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 5200 146 14 6 chrX 83561263 83562922 -93411218 + L1MA2 LINE L1 5774 7452 -271 594 136 10 0 chrX 83563022 83563125 -93411015 + L1MA2 LINE L1 7620 7723 0 278 371 20 0 chrX 83563194 83563345 -93410795 + MIR SINE MIR 79 232 -30 1964 277 41 19 chrX 83563371 83563686 -93410454 + L1M4b LINE L1 2 334 -6525 1149 250 53 37 chrX 83563686 83564142 -93409998 + MLT1C LTR MaLR 5 467 0 1964 277 41 19 chrX 83564142 83564342 -93409798 + L1M4b LINE L1 334 528 -6331 4325 184 29 1 chrX 83564348 83565215 -93408925 + L1MB8 LINE L1 5285 6175 -3 1139 176 59 8 chrX 83565302 83565541 -93408599 - Tigger2 DNA MER2_type -7 2711 2461 4363 154 19 3 chrX 83565590 83566335 -93407805 - Tigger2 DNA MER2_type -1961 757 1 22 0 0 0 chrX 83566356 83566378 -93407762 + AT_rich Low_complexity Low_complexity 1 22 0 1906 242 82 34 chrX 83566386 83567098 -93407042 - L1ME2 LINE L1 -1 6163 5418 2108 113 0 3 chrX 83567427 83567710 -93406430 - AluSx SINE Alu -30 282 1 21 0 0 0 chrX 83569392 83569413 -93404727 + AT_rich Low_complexity Low_complexity 1 21 0 358 255 28 9 chrX 83570717 83570823 -93403317 + L1M4 LINE L1 5007 5114 -2451 1004 313 27 12 chrX 83570824 83571159 -93402981 + MLT1J LTR MaLR 1 340 -171 259 174 0 0 chrX 83571438 83571484 -93402656 - MER63 DNA MER1_type -68 993 948 13284 187 35 11 chrX 83571499 83575214 -93398926 - L1PB1 LINE L1 -1 6866 2868 189 0 0 0 chrX 83575214 83575235 -93398905 + (TA)n Simple_repeat Simple_repeat 2 22 0 13284 187 35 11 chrX 83575235 83577032 -93397108 - L1PB1 LINE L1 -3999 2868 1116 7634 32 0 0 chrX 83577024 83577948 -93396192 - L1P LINE L1 -866 5280 4357 * 6591 40 0 0 chrX 83577948 83578742 -93395398 + L1PA4 LINE L1 5361 6155 0 2852 163 8 19 chrX 83578742 83579241 -93394899 - L1PB1 LINE L1 -5735 1128 634 599 168 8 16 chrX 83579234 83579359 -93394781 - L1PB1 LINE L1 -6658 205 82 * 848 310 90 29 chrX 83579347 83580510 -93393630 + L1M4 LINE L1 5234 6467 -1098 665 193 166 0 chrX 83580484 83580671 -93393469 + L1MC4 LINE L1 8977 9194 -267 * 22 0 0 0 chrX 83581103 83581125 -93393015 + AT_rich Low_complexity Low_complexity 1 22 0 745 301 28 19 chrX 83581951 83582237 -93391903 + MLT1H1 LTR MaLR 11 296 -294 317 225 29 11 chrX 83582455 83582558 -93391582 + MLT1G LTR MaLR 428 576 -14 21 57 0 0 chrX 83583369 83583404 -93390736 + AT_rich Low_complexity Low_complexity 1 35 0 216 300 50 75 chrX 83583755 83583875 -93390265 - L2 LINE L2 -1 3312 3196 989 348 94 52 chrX 83584470 83585226 -93388914 - L2 LINE L2 -360 2954 2111 2223 104 13 3 chrX 83585226 83585533 -93388607 + AluSp SINE Alu 1 310 -3 989 348 94 52 chrX 83585533 83586153 -93387987 - L2 LINE L2 -1203 2111 1519 207 250 138 12 chrX 83586576 83586656 -93387484 + MER91C DNA MER1_type 17 106 -34 443 284 34 72 chrX 83586700 83586964 -93387176 + MLT1K LTR MaLR 315 568 -20 711 283 155 27 chrX 83587389 83587764 -93386376 + L2 LINE L2 2884 3306 -7 243 0 0 0 chrX 83587795 83587822 -93386318 + (CA)n Simple_repeat Simple_repeat 2 28 0 243 220 80 0 chrX 83589491 83589541 -93384599 - L2 LINE L2 0 3272 3219 186 118 0 0 chrX 83589630 83589664 -93384476 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1622 239 94 42 chrX 83589729 83590322 -93383818 + MLT1E2 LTR MaLR 1 624 -2 3993 223 25 12 chrX 83590805 83592881 -93381259 - L1MB4 LINE L1 0 6180 3913 * 5998 238 31 16 chrX 83592879 83594238 -93379902 + L1M1 LINE L1 10 1388 -6177 971 131 131 25 chrX 83594238 83594437 -93379703 - MSTA LTR MaLR 0 428 209 4421 135 24 0 chrX 83594442 83595161 -93378979 + L1MA1 LINE L1 5558 6293 -9 255 292 88 18 chrX 83595208 83595321 -93378819 - L1MB4 LINE L1 -2222 3924 3804 * 1210 257 32 5 chrX 83595314 83595715 -93378425 + L1MB4 LINE L1 3370 3781 -2365 6235 119 1 5 chrX 83595751 83596644 -93377496 - L1P3 LINE L1 -5567 894 5 3565 92 0 17 chrX 83596649 83597192 -93376948 + L1P LINE L1 2860 3393 -2753 364 284 83 43 chrX 83597191 83597660 -93376480 + L1M4 LINE L1 2995 3482 -2664 * 330 259 76 57 chrX 83597685 83597843 -93376297 + MLT1J LTR MaLR 234 394 -117 767 234 33 44 chrX 83598151 83598425 -93375715 + Charlie7 DNA MER1_type 940 1210 -1402 14645 74 5 2 chrX 83598442 83600905 -93373235 + L1PA7 LINE L1 3378 5844 -310 1692 212 3 3 chrX 83601005 83601345 -93372795 + HSMAR1 DNA Mariner 221 560 -727 24 0 0 0 chrX 83601358 83601382 -93372758 + AT_rich Low_complexity Low_complexity 1 24 0 4378 128 3 3 chrX 83601400 83602032 -93372108 + HSMAR1 DNA Mariner 560 1191 -96 1955 164 75 43 chrX 83602048 83602463 -93371677 + MSTC LTR MaLR 1 428 0 26 0 0 0 chrX 83604042 83604068 -93370072 + AT_rich Low_complexity Low_complexity 1 26 0 2434 147 49 2 chrX 83604366 83604775 -93369365 + MSTA LTR MaLR 1 428 0 22 0 0 0 chrX 83605546 83605568 -93368572 + AT_rich Low_complexity Low_complexity 1 22 0 269 26 26 0 chrX 83605751 83605789 -93368351 + (CA)n Simple_repeat Simple_repeat 2 40 0 1908 180 9 3 chrX 83607092 83607437 -93366703 + MER7A DNA MER2_type 2 346 0 957 309 9 0 chrX 83607621 83607854 -93366286 + MIR SINE MIR 7 241 -21 1696 181 13 13 chrX 83608296 83608325 -93365815 - MLT2B3 LTR ERVL -10 544 516 586 0 13 13 chrX 83608325 83608400 -93365740 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 2106 93 0 24 chrX 83608405 83608718 -93365422 - AluY SINE Alu 0 306 1 1696 181 13 13 chrX 83608718 83608990 -93365150 - MLT2B3 LTR ERVL -41 513 236 461 223 0 0 chrX 83608990 83609084 -93365056 - MLT2B3 LTR ERVL -442 112 19 * 668 214 42 9 chrX 83609081 83609210 -93364930 - MSTB LTR MaLR -79 347 195 23 0 0 0 chrX 83609562 83609585 -93364555 + AT_rich Low_complexity Low_complexity 1 23 0 18075 169 40 14 chrX 83609585 83614061 -93360079 - L1MA3 LINE L1 0 7724 18 1257 226 69 17 chrX 83614183 83614532 -93359608 - L1MC1 LINE L1 0 6333 5967 25 65 0 0 chrX 83615320 83615366 -93358774 + AT_rich Low_complexity Low_complexity 1 46 0 26 55 0 41 chrX 83615774 83615847 -93358293 + AT_rich Low_complexity Low_complexity 1 70 0 25 0 0 0 chrX 83616141 83616166 -93357974 + AT_rich Low_complexity Low_complexity 1 25 0 335 261 46 54 chrX 83616221 83616351 -93357789 + HAL1b LINE L1 417 545 -803 385 263 86 57 chrX 83616943 83617152 -93356988 + L1ME LINE L1 2143 2357 -3789 1596 171 18 25 chrX 83617479 83617597 -93356543 - AluJb SINE Alu -26 286 169 4562 67 5 0 chrX 83617597 83618181 -93355959 + LTR14C LTR ERVK 1 587 0 1596 171 18 25 chrX 83618181 83618348 -93355792 - AluJb SINE Alu -143 169 3 234 337 12 0 chrX 83618897 83618983 -93355157 - L1ME LINE L1 -519 5602 5516 33 43 0 0 chrX 83619211 83619258 -93354882 + AT_rich Low_complexity Low_complexity 1 47 0 301 340 78 5 chrX 83619259 83619450 -93354690 + L1ME LINE L1 3877 4081 -2065 911 247 107 33 chrX 83619460 83619825 -93354315 - L1MC4 LINE L1 -168 7874 7483 24 0 0 0 chrX 83620384 83620408 -93353732 + AT_rich Low_complexity Low_complexity 1 24 0 413 259 83 0 chrX 83620441 83620549 -93353591 + L2 LINE L2 3187 3303 -10 309 335 82 54 chrX 83620557 83620873 -93353267 + L1ME LINE L1 4693 5017 -1129 342 330 52 47 chrX 83621213 83621582 -93352558 + L1ME LINE L1 5453 5824 -297 201 239 0 0 chrX 83621659 83621705 -93352435 + (TG)n Simple_repeat Simple_repeat 1 46 0 771 218 150 96 chrX 83622830 83623171 -93350969 - MER65B LTR ERV1 -11 520 80 2110 153 22 8 chrX 83623171 83623530 -93350610 + THE1B LTR MaLR 1 364 0 771 218 150 96 chrX 83623530 83623614 -93350526 - MER65B LTR ERV1 -451 80 2 869 328 34 18 chrX 83623748 83624353 -93349787 - MER65B-int LTR ERV1 -147 6685 4212 288 291 87 0 chrX 83625594 83625697 -93348443 - MER110-int LTR ERV1 -2089 2558 2447 378 0 0 0 chrX 83625727 83625769 -93348371 + (TG)n Simple_repeat Simple_repeat 1 42 0 300 103 0 0 chrX 83625769 83625808 -93348332 - Alu SINE Alu -23 279 241 778 78 0 0 chrX 83627088 83627190 -93346950 - THE1B LTR MaLR 0 364 263 430 363 0 12 chrX 83627447 83627618 -93346522 + HERV16 LTR ERVL 1284 1452 -3544 * 1457 349 63 11 chrX 83627608 83628402 -93345738 + HERV16 LTR ERVL 4075 4894 -760 1333 122 50 14 chrX 83628408 83628630 -93345510 + MER30 DNA MER1_type 1 230 0 269 281 16 31 chrX 83629379 83629507 -93344633 + LTR16C LTR ERVL 355 480 -11 1226 287 24 88 chrX 83629510 83630272 -93343868 + L1ME3A LINE L1 5345 6057 -113 1749 153 7 3 chrX 83630722 83631004 -93343136 + AluJb SINE Alu 3 286 -21 198 0 0 0 chrX 83631004 83631026 -93343114 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2158 180 13 3 chrX 83631495 83631879 -93342261 + MLT1B LTR MaLR 1 388 -2 21 0 0 0 chrX 83632334 83632355 -93341785 + AT_rich Low_complexity Low_complexity 1 21 0 1647 205 46 3 chrX 83632944 83633334 -93340806 - L1MA9 LINE L1 -38 6274 5868 408 311 44 0 chrX 83633333 83633603 -93340537 - L1M4c LINE L1 -4024 2360 2079 * 22 0 0 0 chrX 83633627 83633649 -93340491 + AT_rich Low_complexity Low_complexity 1 22 0 414 151 0 14 chrX 83633649 83633722 -93340418 + MLT2B3 LTR ERVL 1 72 -482 1678 185 27 84 chrX 83633735 83634141 -93339999 + MSTD LTR MaLR 1 383 -13 259 105 0 0 chrX 83634151 83634189 -93339951 + MSTD LTR MaLR 340 377 -19 385 95 79 0 chrX 83634191 83634254 -93339886 + MSTD LTR MaLR 327 394 -2 2087 223 45 36 chrX 83634256 83634633 -93339507 + MLT2B3 LTR ERVL 80 452 -102 1568 219 50 88 chrX 83634633 83635269 -93338871 - LTR9 LTR ERV1 0 612 1 2087 223 45 36 chrX 83635269 83635310 -93338830 + MLT2B3 LTR ERVL 452 491 -63 404 77 15 0 chrX 83635310 83635375 -93338765 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 2087 223 45 36 chrX 83635375 83635426 -93338714 + MLT2B3 LTR ERVL 491 554 0 10276 194 53 6 chrX 83635427 83637360 -93336780 + ERVL-B3 LTR ERVL 2 2025 -3739 276 379 0 7 chrX 83637367 83637520 -93336620 - L1M4c LINE L1 -5731 572 421 532 281 35 26 chrX 83637807 83638038 -93336102 + L1M4 LINE L1 3625 3857 -2289 309 333 83 0 chrX 83638049 83638193 -93335947 + L1M4 LINE L1 3983 4138 -2008 3402 196 74 42 chrX 83638206 83639284 -93334856 + L1MA1 LINE L1 5181 6298 -4 2516 161 17 27 chrX 83639294 83639821 -93334319 + L1MA7 LINE L1 5770 6291 0 320 306 14 14 chrX 83639902 83640046 -93334094 - L1ME LINE L1 -280 5841 5698 284 301 60 42 chrX 83640053 83640435 -93333705 + L1M4 LINE L1 4156 4544 -1602 30 27 0 0 chrX 83640671 83640708 -93333432 + AT_rich Low_complexity Low_complexity 1 37 0 460 259 18 0 chrX 83640968 83641080 -93333060 - MER94 DNA DNA -15 119 6 225 0 0 0 chrX 83641880 83641905 -93332235 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chrX 83641904 83641936 -93332204 + (TG)n Simple_repeat Simple_repeat 2 33 0 213 196 22 0 chrX 83642847 83642893 -93331247 - MIR SINE MIR -120 142 96 379 309 83 37 chrX 83643009 83643358 -93330782 + L1M4 LINE L1 3086 3450 -2696 30 0 0 0 chrX 83644171 83644201 -93329939 + AT_rich Low_complexity Low_complexity 1 30 0 612 301 137 41 chrX 83644260 83644864 -93329276 + L1M4 LINE L1 2791 3452 -2694 3401 42 12 0 chrX 83644896 83645320 -93328820 + L1PA3 LINE L1 5724 6152 -3 272 350 38 12 chrX 83645507 83645667 -93328473 + MLT1I LTR MaLR 114 277 -132 2151 104 0 7 chrX 83645762 83646070 -93328070 + AluSc SINE Alu 1 306 -3 485 282 94 60 chrX 83646075 83646607 -93327533 - L1M4 LINE L1 -3151 2995 2446 12705 215 32 21 chrX 83646658 83646962 -93327178 - L1PB2 LINE L1 -1 6852 6553 1772 132 29 65 chrX 83646962 83647272 -93326868 - AluSx SINE Alu -13 299 1 12705 215 32 21 chrX 83647272 83648301 -93325839 - L1PB2 LINE L1 -300 6553 5537 4973 126 42 0 chrX 83648301 83649063 -93325077 - LTR25 LTR ERV1 0 794 1 12705 215 32 21 chrX 83649063 83652029 -93322111 - L1PB2 LINE L1 -1316 5537 2411 1775 200 91 28 chrX 83652029 83652490 -93321650 - LTR2B LTR ERV1 0 490 1 12705 215 32 21 chrX 83652490 83652531 -93321609 - L1PB2 LINE L1 -4442 2411 2372 15429 103 12 3 chrX 83652531 83654787 -93319353 - Harlequin LTR ERV1 -41 6855 4713 2119 205 8 28 chrX 83654806 83655301 -93318839 - L1PB2 LINE L1 -5219 1630 646 4169 137 10 39 chrX 83655301 83656125 -93318015 - pTR5 LTR ERV1 -896 1542 743 763 161 7 0 chrX 83656125 83656262 -93317878 - L1MA4 LINE L1 -139 6161 6024 1210 208 12 8 chrX 83656262 83656502 -93317638 + MLT1B LTR MaLR 150 390 0 21 0 0 0 chrX 83656564 83656585 -93317555 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 83656670 83656700 -93317440 + AT_rich Low_complexity Low_complexity 1 30 0 276 123 39 45 chrX 83656700 83656854 -93317286 + A-rich Low_complexity Low_complexity 4 156 0 31 58 0 0 chrX 83656854 83656906 -93317234 + AT_rich Low_complexity Low_complexity 1 52 0 1395 129 5 5 chrX 83657314 83657523 -93316617 - AluSq SINE Alu -15 298 90 293 333 29 43 chrX 83657655 83657793 -93316347 + L2 LINE L2 3177 3312 -1 1953 233 99 6 chrX 83659530 83660046 -93314094 + MLT1F1 LTR MaLR 1 564 -3 377 205 62 18 chrX 83660282 83660394 -93313746 + L1ME4a LINE L1 5983 6099 -22 207 227 0 0 chrX 83660395 83660439 -93313701 - L2 LINE L2 -8 3305 3262 750 304 123 19 chrX 83660465 83660913 -93313227 - L2 LINE L2 -44 3269 2768 3740 160 22 0 chrX 83661692 83662385 -93311755 + L1MA4 LINE L1 5589 6296 -4 191 394 19 19 chrX 83662565 83662720 -93311420 + L2 LINE L2 1153 1307 -2007 256 305 110 24 chrX 83662789 83662871 -93311269 - L2 LINE L2 -16 3256 3168 1535 214 36 36 chrX 83662886 83663362 -93310778 - Charlie1 DNA MER1_type -1 2760 2285 232 231 19 0 chrX 83663536 83663588 -93310552 + C-rich Low_complexity Low_complexity 5 57 0 3158 232 46 6 chrX 83865519 83866202 -93107938 + L1M4 LINE L1 3508 4162 -1984 2380 135 8 19 chrX 83866202 83866581 -93107559 - THE1C LTR MaLR 0 375 1 9241 126 35 53 chrX 83866581 83868190 -93105950 - THE1C-int LTR MaLR 0 1580 1 2297 127 16 21 chrX 83868190 83868567 -93105573 - THE1C LTR MaLR 0 375 1 3158 232 46 6 chrX 83868567 83868723 -93105417 + L1M4 LINE L1 4161 4383 -1763 259 229 0 0 chrX 83868723 83868771 -93105369 + AluJ/monomer SINE Alu 1 48 -253 312 261 63 28 chrX 83868791 83868933 -93105207 + L1M4 LINE L1 4848 4994 -1152 17720 202 28 27 chrX 83868933 83872530 -93101610 + L1M1 LINE L1 17 3617 -3948 258 32 0 0 chrX 83872530 83872561 -93101579 + (CA)n Simple_repeat Simple_repeat 2 32 0 17720 202 28 27 chrX 83872561 83873552 -93100588 + L1M1 LINE L1 3617 4605 -2960 10311 223 40 42 chrX 83873561 83877448 -93096692 + L1PA12 LINE L1 1 4973 -2606 1452 201 6 31 chrX 83877448 83877642 -93096498 + L1PA16 LINE L1 5845 6038 -128 2260 133 8 22 chrX 83877642 83878011 -93096129 + THE1B LTR MaLR 1 364 0 1452 201 6 31 chrX 83878011 83878132 -93096008 + L1PA16 LINE L1 6038 6160 -6 1324 249 43 15 chrX 83878153 83879015 -93095125 + L1M4c LINE L1 1792 2781 -3601 1680 237 3 8 chrX 83879026 83879393 -93094747 - MLT1A1 LTR MaLR 0 365 1 2684 261 99 53 chrX 83879416 83881010 -93093130 - MLT1A1-int LTR MaLR -28 1707 2 1311 201 136 6 chrX 83881010 83881333 -93092807 - MLT1A1 LTR MaLR 0 365 1 578 224 61 0 chrX 83881333 83881480 -93092660 + L1M4c LINE L1 2788 2943 -3439 * 958 257 45 16 chrX 83881477 83881858 -93092282 + L1M4c LINE L1 3627 4018 -2364 1491 157 40 105 chrX 83881859 83882260 -93091880 + THE1C LTR MaLR 1 375 0 9047 145 25 47 chrX 83882262 83883869 -93090271 + THE1B-int LTR MaLR 3 1574 -6 1580 184 34 79 chrX 83883875 83884214 -93089926 + THE1B LTR MaLR 1 323 -41 2049 129 0 7 chrX 83884214 83884516 -93089624 - AluSx SINE Alu -12 300 1 1580 184 34 79 chrX 83884516 83884557 -93089583 + THE1B LTR MaLR 323 364 0 660 248 78 9 chrX 83884559 83884777 -93089363 + L1M4c LINE L1 4017 4249 -2133 278 247 140 40 chrX 83884842 83884992 -93089148 + MIR SINE MIR 98 262 0 320 299 0 0 chrX 83885941 83886028 -93088112 - MLT1F1-int LTR MaLR -761 610 524 335 283 0 40 chrX 83886036 83886117 -93088023 + MER81 DNA DNA 4 82 -32 2369 86 0 0 chrX 83886117 83886419 -93087721 + AluY SINE Alu 1 302 -9 335 283 0 40 chrX 83886419 83886436 -93087704 + MER81 DNA DNA 82 98 -16 365 319 29 15 chrX 83886467 83886671 -93087469 - MLT1F1-int LTR MaLR -854 517 311 457 262 201 23 chrX 83886859 83887073 -93087067 + MIR SINE MIR 11 262 0 2090 151 0 19 chrX 83887084 83887448 -93086692 - L1PB1 LINE L1 -4 6147 5791 307 119 24 36 chrX 83887596 83887680 -93086460 + (TA)n Simple_repeat Simple_repeat 2 84 0 2797 109 23 5 chrX 83887680 83888112 -93086028 - L1PB1 LINE L1 -360 5791 5352 * 3356 253 3 5 chrX 83888106 83889026 -93085114 - L1 LINE L1 -2365 3781 2864 1057 184 0 5 chrX 83889025 83889221 -93084919 + L1PBa LINE L1 6 200 -6663 * 2576 114 65 37 chrX 83889222 83889687 -93084453 + L1PBa LINE L1 635 1112 -5751 * 2582 210 5 10 chrX 83889683 83890263 -93083877 + L1 LINE L1 2289 2865 -3281 261 316 0 0 chrX 83890261 83890337 -93083803 - MLT1F1-int LTR MaLR -1294 77 2 * 1359 200 3 52 chrX 83890338 83890643 -93083497 - MLT1F1 LTR MaLR 0 567 278 1017 283 104 27 chrX 83890684 83891200 -93082940 - MLT1E2 LTR MaLR -15 611 21 218 301 97 11 chrX 83891223 83891316 -93082824 - L2 LINE L2 -224 3048 2948 2081 100 4 4 chrX 83892071 83892380 -93081760 - AluSg SINE Alu 0 309 1 398 321 24 0 chrX 83892647 83892812 -93081328 + L1MEc LINE L1 1440 1608 -4788 21 36 0 0 chrX 83892819 83892847 -93081293 + AT_rich Low_complexity Low_complexity 1 28 0 330 266 99 47 chrX 83893213 83893596 -93080544 + L1MEc LINE L1 2112 2514 -3882 1197 101 27 5 chrX 83893658 83893846 -93080294 + L1PA14 LINE L1 5970 6161 0 1710 243 28 10 chrX 83893871 83894262 -93079878 - MLT1C LTR MaLR 0 467 70 2070 269 66 22 chrX 83894404 83895852 -93078288 + L1MCb LINE L1 695 2409 -4336 * 4386 216 50 12 chrX 83895850 83896902 -93077238 - L1 LINE L1 -2011 4135 3033 1902 130 3 29 chrX 83896902 83897210 -93076930 + AluJb SINE Alu 1 300 -12 4386 216 50 12 chrX 83897210 83897322 -93076818 - L1 LINE L1 -3113 3033 2927 2480 179 37 0 chrX 83897325 83897788 -93076352 - L1PA15 LINE L1 -9 6156 5677 991 58 22 0 chrX 83897788 83897926 -93076214 - AluY SINE Alu -19 292 152 1587 45 0 15 chrX 83897926 83898128 -93076012 - AluY SINE Alu -112 199 1 693 183 0 0 chrX 83898132 83898252 -93075888 - L1PA15 LINE L1 -484 5681 5562 275 51 0 0 chrX 83898255 83898294 -93075846 - MADE1 DNA Mariner 0 80 42 1554 102 0 0 chrX 83898294 83898500 -93075640 - AluSc SINE Alu -16 293 88 5191 167 10 45 chrX 83899265 83900427 -93073713 - L1PA13 LINE L1 -2 6161 5085 2168 99 0 3 chrX 83900427 83900710 -93073430 - AluSx SINE Alu -30 282 1 5191 167 10 45 chrX 83900710 83901183 -93072957 - L1PA13 LINE L1 -1078 5085 4597 816 232 11 5 chrX 83901527 83901717 -93072423 - MLT1B LTR MaLR -3 387 197 204 339 0 0 chrX 83901729 83901785 -93072355 + polypurine Low_complexity Low_complexity 2 57 0 1259 198 63 95 chrX 83901836 83902243 -93071897 + L1MC1 LINE L1 1749 2168 -4214 2353 45 0 52 chrX 83902243 83902552 -93071588 - AluY SINE Alu -18 293 1 1259 198 63 95 chrX 83902552 83902934 -93071206 + L1MC1 LINE L1 2168 2607 -3775 3304 214 23 0 chrX 83902934 83903662 -93070478 + L1MC1 LINE L1 5819 6563 -6 1259 198 63 95 chrX 83903662 83903675 -93070465 + L1MC1 LINE L1 2607 2619 -3763 231 170 0 0 chrX 83904298 83904345 -93069795 + (TA)n Simple_repeat Simple_repeat 2 48 0 2267 95 3 0 chrX 83905823 83906129 -93068011 - AluSq SINE Alu -6 307 1 740 255 161 56 chrX 83906310 83906387 -93067753 - L1MEc LINE L1 -3248 2967 2899 3412 102 35 96 chrX 83906387 83907034 -93067106 + LTR66 LTR ERVL 3 610 0 740 255 161 56 chrX 83907034 83907887 -93066253 - L1MEc LINE L1 -3316 2899 1968 320 290 30 6 chrX 83907945 83908114 -93066026 + (TA)n Simple_repeat Simple_repeat 1 173 0 184 111 44 0 chrX 83908160 83908205 -93065935 + (TA)n Simple_repeat Simple_repeat 1 47 0 2713 306 59 36 chrX 83908295 83909390 -93064750 - L1M4 LINE L1 -1408 4738 3618 293 171 0 14 chrX 83909547 83909617 -93064523 + (TA)n Simple_repeat Simple_repeat 2 70 0 218 297 0 0 chrX 83910704 83910768 -93063372 + (TA)n Simple_repeat Simple_repeat 1 64 0 3481 238 60 24 chrX 83910807 83912443 -93061697 - L1MD2 LINE L1 -13 6346 4651 1052 172 6 0 chrX 83912443 83912612 -93061528 - L1PA12 LINE L1 -6521 1060 891 * 1332 133 0 0 chrX 83912603 83912798 -93061342 - L1PA12 LINE L1 -7367 214 20 1782 249 28 36 chrX 83912807 83913302 -93060838 + L1MD2 LINE L1 5856 6346 -13 402 294 117 44 chrX 83913672 83913920 -93060220 + L1MC4a LINE L1 6385 6650 -1158 717 232 66 11 chrX 83913928 83914109 -93060031 - MLT1D LTR MaLR -1 504 314 21 71 0 0 chrX 83915364 83915406 -93058734 + AT_rich Low_complexity Low_complexity 1 42 0 2142 112 3 0 chrX 83915472 83915768 -93058372 + AluSx SINE Alu 1 297 -15 265 273 130 25 chrX 83916989 83917150 -93056990 + MER112 DNA MER1_type 76 253 -7 493 115 0 0 chrX 83917162 83917240 -93056900 + L1MA6 LINE L1 6223 6300 0 24 53 0 0 chrX 83917974 83918012 -93056128 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chrX 83918185 83918214 -93055926 + AT_rich Low_complexity Low_complexity 1 29 0 3960 103 0 0 chrX 83919102 83919656 -93054484 + MER41A LTR ERV1 1 554 0 399 301 175 11 chrX 83920290 83920765 -93053375 - HAL1 LINE L1 -722 1785 1233 759 305 9 5 chrX 83921903 83922126 -93052014 + MER58A DNA MER1_type 1 224 0 10344 189 56 21 chrX 83922276 83924807 -93049333 - L1M1 LINE L1 -743 6822 4380 2831 16 0 0 chrX 83924807 83925121 -93049019 + AluYb8 SINE Alu 1 314 -4 10344 189 56 21 chrX 83925121 83925840 -93048300 - L1M1 LINE L1 -3185 4380 3687 2128 141 3 0 chrX 83925840 83926152 -93047988 - AluSq SINE Alu 0 313 1 10344 189 56 21 chrX 83926152 83926616 -93047524 - L1M1 LINE L1 -3878 3687 3241 2118 65 8 0 chrX 83926616 83926879 -93047261 - AluY SINE Alu -8 303 39 10344 189 56 21 chrX 83926879 83927740 -93046400 - L1M1 LINE L1 -4324 3241 2190 253 295 0 0 chrX 83928008 83928069 -93046071 - MLT1A1-int LTR MaLR -639 732 672 761 104 30 0 chrX 83928069 83928204 -93045936 + (TA)n Simple_repeat Simple_repeat 1 139 0 3007 208 12 30 chrX 83928205 83928860 -93045280 - MLT1A1-int LTR MaLR -1092 643 1 1323 268 6 23 chrX 83928873 83929227 -93044913 - MLT1A1 LTR MaLR -17 348 1 3692 239 42 16 chrX 83929233 83930787 -93043353 - L1M3 LINE L1 -407 5776 4147 1653 189 21 40 chrX 83931531 83931954 -93042186 - L1MB4 LINE L1 -2 6178 5764 322 283 19 0 chrX 83931950 83932056 -93042084 + L1M4 LINE L1 4513 4620 -1526 * 1582 161 73 3 chrX 83932165 83932481 -93041659 - L1MA10 LINE L1 -8 6326 5989 2930 182 22 40 chrX 83932498 83932750 -93041390 - L1ME1 LINE L1 -325 5841 5586 3544 121 19 9 chrX 83932750 83933320 -93040820 - L1MA1 LINE L1 -8 6294 5719 2930 182 22 40 chrX 83933320 83934193 -93039947 - L1ME1 LINE L1 -580 5586 4779 6004 148 37 6 chrX 83934193 83935208 -93038932 + MER50-int LTR ERV1 4981 6027 -1178 1950 174 0 3 chrX 83935207 83935524 -93038616 + MER50-int LTR ERV1 6882 7197 -8 * 2335 163 17 4 chrX 83935524 83936175 -93037965 + MER50 LTR ERV1 1 711 -23 836 186 9 91 chrX 83936226 83936447 -93037693 - LTR29 LTR ERV1 -236 386 184 1554 183 48 0 chrX 83937837 83938110 -93036030 - AluJo SINE Alu -26 286 1 1881 144 77 14 chrX 83938152 83938505 -93035635 + THE1C LTR MaLR 1 375 0 9067 143 58 9 chrX 83938505 83940011 -93034129 + THE1C-int LTR MaLR 1 1580 0 1730 160 83 11 chrX 83940011 83940361 -93033779 + THE1C LTR MaLR 1 375 0 330 383 16 21 chrX 83940363 83940551 -93033589 - MIR SINE MIR -70 192 6 1122 231 131 27 chrX 83940799 83940925 -93033215 + MER31B LTR ERV1 1 113 -548 1757 186 24 37 chrX 83940925 83941301 -93032839 - MER93b LTR ERV1 0 373 3 1122 231 131 27 chrX 83941301 83941594 -93032546 + MER31B LTR ERV1 113 661 0 231 186 0 0 chrX 83942190 83942233 -93031907 + L2 LINE L2 3255 3297 -16 883 265 70 59 chrX 83943078 83943534 -93030606 - LTR38 LTR ERV1 0 556 96 216 0 0 0 chrX 83943572 83943596 -93030544 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 27 81 0 0 chrX 83943791 83943853 -93030287 + AT_rich Low_complexity Low_complexity 1 62 0 195 129 0 0 chrX 83943922 83943953 -93030187 + (TATG)n Simple_repeat Simple_repeat 2 32 0 346 113 0 0 chrX 83944036 83944049 -93030091 - L1P5 LINE L1 -662 5489 5477 2377 97 0 67 chrX 83944049 83944451 -93029689 - L1PB1 LINE L1 0 6151 5777 346 113 0 0 chrX 83944451 83944490 -93029650 - L1P5 LINE L1 -673 5478 5437 * 1512 225 23 27 chrX 83944481 83945113 -93029027 - L1 LINE L1 -3618 3947 3316 395 327 25 13 chrX 83945324 83945483 -93028657 - L1 LINE L1 -7007 559 399 307 305 85 8 chrX 83945481 83945717 -93028423 - L1M4 LINE L1 -944 5202 4949 * 30 0 0 0 chrX 83945755 83945785 -93028355 + AT_rich Low_complexity Low_complexity 1 30 0 1878 262 43 11 chrX 83945785 83946452 -93027688 - L1M4 LINE L1 -1358 4788 4100 589 298 67 30 chrX 83946446 83947016 -93027124 - L1M4 LINE L1 -2375 3771 3181 * 1141 240 47 6 chrX 83947086 83947407 -93026733 - L1MC3 LINE L1 -44 7741 7408 2027 217 48 32 chrX 83947410 83948000 -93026140 + MLT2B3 LTR ERVL 5 515 0 4385 209 113 56 chrX 83948000 83949332 -93024808 - L1MC3 LINE L1 -372 7413 6006 432 267 59 0 chrX 83949337 83949475 -93024665 + AluJb SINE Alu 179 322 0 543 256 62 22 chrX 83949493 83949767 -93024373 - L1M4 LINE L1 -743 5403 5119 * 6269 177 28 14 chrX 83949763 83952220 -93021920 - L1MA2 LINE L1 0 7723 5234 1390 170 112 32 chrX 83952220 83952567 -93021573 - THE1C LTR MaLR 0 375 1 8471 158 14 71 chrX 83952568 83952805 -93021335 - THE1C-int LTR MaLR -1 1579 1330 1318 102 76 4 chrX 83952805 83953028 -93021112 + L1PA10 LINE L1 5928 6168 0 8471 158 14 71 chrX 83953028 83954463 -93019677 - THE1C-int LTR MaLR -250 1330 3 1557 150 74 49 chrX 83954465 83954831 -93019309 - THE1C LTR MaLR 0 375 1 1207 241 10 3 chrX 83954831 83955126 -93019014 - L1MA2 LINE L1 -2327 5238 4942 24 0 0 0 chrX 83955140 83955164 -93018976 + AT_rich Low_complexity Low_complexity 1 24 0 1186 115 0 0 chrX 83955164 83955321 -93018819 - AluSg/x SINE Alu -23 289 133 4270 132 24 13 chrX 83955340 83956103 -93018037 - L1MA2 LINE L1 -4102 3463 2693 1496 182 7 7 chrX 83956108 83956377 -93017763 - THE1C LTR MaLR 0 375 107 8022 149 51 51 chrX 83956395 83957974 -93016166 - THE1C-int LTR MaLR 0 1580 1 1817 160 52 19 chrX 83957974 83958337 -93015803 - THE1C LTR MaLR 0 375 1 3746 179 5 14 chrX 83958337 83959075 -93015065 - L1MA2 LINE L1 -4873 2692 1961 4268 217 30 17 chrX 83959078 83960296 -93013844 - L1MA2 LINE L1 -5659 1906 575 4538 246 34 14 chrX 83960401 83961822 -93012318 - L1M1 LINE L1 -5411 2154 16 2743 210 39 21 chrX 83961824 83962658 -93011482 - LTR48B-int LTR ERV1 -918 4205 3361 458 141 0 0 chrX 83962663 83962741 -93011399 - LTR48B-int LTR ERV1 -1945 4386 4309 1684 249 63 5 chrX 83962745 83963139 -93011001 - MSTB LTR MaLR -9 417 1 1332 195 15 8 chrX 83963139 83963406 -93010734 - MSTB-int LTR MaLR 0 1651 1383 3625 229 70 29 chrX 83963429 83964151 -93009989 - MSTB-int LTR MaLR -535 1045 281 453 19 0 0 chrX 83964151 83964205 -93009935 + (TG)n Simple_repeat Simple_repeat 1 54 0 3625 229 70 29 chrX 83964205 83964498 -93009642 - MSTB-int LTR MaLR -1299 281 1 523 148 102 31 chrX 83964498 83964564 -93009576 - MSTB LTR MaLR 0 432 372 2025 150 3 0 chrX 83964564 83964857 -93009283 + AluSx SINE Alu 1 294 -18 523 148 102 31 chrX 83964857 83964918 -93009222 - MSTB LTR MaLR -60 372 296 798 181 22 53 chrX 83964927 83965154 -93008986 - LTR48B-int LTR ERV1 -2016 4315 4096 * 12113 190 77 126 chrX 83965146 83967878 -93006262 - LTR48B-int LTR ERV1 -2199 4132 1268 634 156 0 0 chrX 83967878 83967987 -93006153 + L1P LINE L1 3874 3982 -2164 12113 190 77 126 chrX 83967987 83968243 -93005897 - LTR48B-int LTR ERV1 -5063 1268 1001 1999 136 3 3 chrX 83968243 83968537 -93005603 - AluSx SINE Alu -18 294 1 12113 190 77 126 chrX 83968537 83969783 -93004357 - LTR48B-int LTR ERV1 -5330 1001 1 1509 251 108 10 chrX 83969785 83970371 -93003769 - LTR48B LTR ERV1 0 644 2 1741 102 4 0 chrX 83970487 83970713 -93003427 - AluSq SINE Alu -56 257 31 30 0 0 0 chrX 83970868 83970898 -93003242 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 83970929 83970966 -93003174 + AT_rich Low_complexity Low_complexity 1 37 0 221 282 128 13 chrX 83971346 83971424 -93002716 - MER5A DNA MER1_type 0 189 103 180 0 0 0 chrX 83972374 83972394 -93001746 + (TA)n Simple_repeat Simple_repeat 2 21 0 10740 60 5 9 chrX 83972456 83974671 -92999469 - L1PA6 LINE L1 -1 6153 3945 21 36 0 0 chrX 83974838 83974866 -92999274 + AT_rich Low_complexity Low_complexity 1 28 0 929 231 68 20 chrX 83975223 83975665 -92998475 + L1M4 LINE L1 3031 3493 -2653 17630 206 32 14 chrX 83975688 83982843 -92991297 - L1MA1 LINE L1 -423 7298 16 823 254 37 28 chrX 83982846 83983378 -92990762 - L1M4 LINE L1 -3820 2562 2029 1792 173 32 22 chrX 83983484 83983855 -92990285 - THE1C LTR MaLR 0 375 1 6855 153 19 16 chrX 83983855 83985368 -92988772 - THE1C-int LTR MaLR 0 1580 3 1656 172 77 15 chrX 83985370 83985708 -92988432 - THE1C LTR MaLR 0 375 17 1161 269 40 20 chrX 83985768 83986118 -92988022 + MLT1E3 LTR MaLR 260 616 -8 33 80 0 0 chrX 83986146 83986221 -92987919 + AT_rich Low_complexity Low_complexity 1 75 0 32 0 0 0 chrX 83986357 83986389 -92987751 + AT_rich Low_complexity Low_complexity 1 32 0 21 89 0 0 chrX 83986593 83986649 -92987491 + AT_rich Low_complexity Low_complexity 1 56 0 2626 171 38 0 chrX 83986970 83987501 -92986639 - Tigger3(Golem) DNA MER2_type -1 3028 2478 270 263 13 26 chrX 83987509 83987585 -92986555 + Tigger3b DNA MER2_type 1 75 -1156 24 32 0 0 chrX 83987822 83987853 -92986287 + AT_rich Low_complexity Low_complexity 1 31 0 2377 122 3 17 chrX 83988483 83988659 -92985481 - THE1A LTR MaLR 0 355 178 2776 10 0 0 chrX 83988659 83988962 -92985178 + AluYa5 SINE Alu 1 303 -8 2377 122 3 17 chrX 83988962 83989145 -92984995 - THE1A LTR MaLR -177 178 1 11200 106 5 1 chrX 83989145 83990719 -92983421 - THE1A-int LTR MaLR 0 1580 1 2465 96 6 30 chrX 83990719 83991083 -92983057 - THE1A LTR MaLR 0 355 1 2838 122 16 0 chrX 83991152 83991624 -92982516 + L1PA10 LINE L1 5709 6187 0 2356 183 31 76 chrX 83992157 83992764 -92981376 - LTR25 LTR ERV1 0 794 215 328 258 0 113 chrX 83992745 83992869 -92981271 - MER61E LTR ERV1 -459 110 1 * 180 91 68 0 chrX 83992991 83993035 -92981105 + (TA)n Simple_repeat Simple_repeat 2 48 0 5460 162 52 37 chrX 83993055 83993541 -92980599 - Tigger3b DNA MER2_type -1817 1211 733 2156 133 0 0 chrX 83993541 83993841 -92980299 - AluSq SINE Alu -12 301 2 5460 162 52 37 chrX 83993841 83994256 -92979884 - Tigger3b DNA MER2_type -2295 733 287 2266 110 3 3 chrX 83994256 83994565 -92979575 + AluSq SINE Alu 1 309 -4 5460 162 52 37 chrX 83994565 83994839 -92979301 - Tigger3b DNA MER2_type -2741 287 18 183 162 0 0 chrX 83994852 83994889 -92979251 + (TG)n Simple_repeat Simple_repeat 2 38 0 387 237 183 32 chrX 83995716 83995902 -92978238 + MER67C LTR ERV1 1 214 -496 2323 194 89 0 chrX 83995930 83996426 -92977714 + MER67C LTR ERV1 171 710 0 1023 254 173 18 chrX 83996650 83996992 -92977148 - MSTD LTR MaLR 0 396 2 375 313 37 0 chrX 83996992 83997126 -92977014 + MIR SINE MIR 52 190 -72 48 72 0 0 chrX 83997158 83997255 -92976885 + AT_rich Low_complexity Low_complexity 1 97 0 21 0 0 0 chrX 83997293 83997314 -92976826 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 83997996 83998021 -92976119 + AT_rich Low_complexity Low_complexity 1 25 0 712 158 0 0 chrX 83998313 83998433 -92975707 - L1MC/D LINE L1 -838 5495 5376 3846 205 24 31 chrX 83999075 83999984 -92974156 + MER4D LTR ERV1 1 903 0 207 0 0 0 chrX 84000623 84000646 -92973494 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 182 301 130 41 chrX 84001069 84001192 -92972948 + L2 LINE L2 2594 2727 -587 21 36 0 0 chrX 84001288 84001316 -92972824 + AT_rich Low_complexity Low_complexity 1 28 0 194 0 39 0 chrX 84002249 84002275 -92971865 + (TA)n Simple_repeat Simple_repeat 2 28 0 351 0 0 0 chrX 84002278 84002317 -92971823 + (GA)n Simple_repeat Simple_repeat 2 40 0 27 49 0 0 chrX 84002595 84002636 -92971504 + AT_rich Low_complexity Low_complexity 1 41 0 2129 163 22 5 chrX 84002782 84003151 -92970989 + THE1C LTR MaLR 1 375 0 9550 121 38 36 chrX 84003152 84004728 -92969412 + THE1C-int LTR MaLR 2 1580 0 2275 153 8 3 chrX 84004728 84005101 -92969039 + THE1C LTR MaLR 1 375 0 13187 97 3 0 chrX 84006169 84008048 -92966092 + L1P LINE L1 3268 5151 -995 21 0 0 0 chrX 84008431 84008452 -92965688 + AT_rich Low_complexity Low_complexity 1 21 0 629 246 75 32 chrX 84008958 84009145 -92964995 + MIR SINE MIR 32 226 -36 193 293 0 0 chrX 84009182 84009223 -92964917 - MIR SINE MIR -164 98 58 205 288 38 0 chrX 84009399 84009479 -92964661 + MIR SINE MIR 123 205 -57 261 280 100 0 chrX 84009725 84009825 -92964315 - MARNA DNA Mariner -308 278 169 935 291 37 12 chrX 84010405 84010891 -92963249 - MLT1E LTR MaLR -1 592 1 1922 102 0 92 chrX 84011845 84012170 -92961970 + AluY SINE Alu 13 307 -4 255 278 122 71 chrX 84012803 84013310 -92960830 + L1ME LINE L1 5348 5880 -241 22 70 0 0 chrX 84013885 84013928 -92960212 + AT_rich Low_complexity Low_complexity 1 43 0 1627 134 12 8 chrX 84014644 84014898 -92959242 - AluSx SINE Alu -57 255 1 7005 205 35 60 chrX 84014902 84015148 -92958992 - L1 LINE L1 -860 5286 5035 2312 103 3 0 chrX 84015148 84015459 -92958681 - AluSp SINE Alu -1 312 1 7005 205 35 60 chrX 84015459 84016078 -92958062 - L1 LINE L1 -1111 5035 4402 387 41 0 0 chrX 84016078 84016127 -92958013 + (TG)n Simple_repeat Simple_repeat 1 49 0 7005 205 35 60 chrX 84016127 84017393 -92956747 - L1 LINE L1 -1744 4402 3209 722 221 0 0 chrX 84017414 84017568 -92956572 - L1P LINE L1 -3597 2549 2396 522 264 21 14 chrX 84017576 84017720 -92956420 - MSTA LTR MaLR -153 275 131 410 167 0 14 chrX 84017704 84017776 -92956364 - MER51A LTR ERV1 -148 486 416 * 627 82 26 171 chrX 84017776 84018028 -92956112 + MER4B-int LTR ERV1 1780 4079 -801 * 642 174 16 37 chrX 84018025 84018215 -92955925 - MER4B-int LTR ERV1 -4598 2160 1975 * 2299 187 35 33 chrX 84018207 84018688 -92955452 + MER4B-int LTR ERV1 421 902 -6914 1578 174 20 64 chrX 84018698 84019105 -92955035 - MER41-int LTR ERV1 -6948 1172 784 297 244 44 69 chrX 84019157 84019235 -92954905 - MER41-int LTR ERV1 -3736 3022 2944 2331 122 6 25 chrX 84019235 84019595 -92954545 + THE1A LTR MaLR 3 355 0 11417 101 10 3 chrX 84019595 84021164 -92952976 + THE1A-int LTR MaLR 1 1580 0 2369 102 11 33 chrX 84021166 84021527 -92952613 + THE1A LTR MaLR 3 355 0 297 244 44 69 chrX 84021527 84021604 -92952536 - MER41-int LTR ERV1 -3814 2944 2867 549 182 0 10 chrX 84021604 84021703 -92952437 + MER4A LTR ERV1 1 98 -566 1759 124 146 77 chrX 84021703 84021751 -92952389 + MER4A LTR ERV1 261 304 -360 1978 162 30 30 chrX 84021751 84022115 -92952025 + THE1B LTR MaLR 1 364 0 1759 124 146 77 chrX 84022115 84022444 -92951696 + MER4A LTR ERV1 304 664 0 1273 190 33 56 chrX 84022444 84022886 -92951254 - MER41-int LTR ERV1 -3825 1298 1190 198 0 0 0 chrX 84022977 84022999 -92951141 + (A)n Simple_repeat Simple_repeat 1 22 0 466 201 23 0 chrX 84023059 84023156 -92950984 - MER41-int LTR ERV1 -3224 2722 857 1013 236 64 27 chrX 84023167 84023208 -92950932 - MER41-int LTR ERV1 -3751 2512 2474 3859 64 14 0 chrX 84023208 84023691 -92950449 - LTR2B LTR ERV1 0 490 1 1013 236 64 27 chrX 84023691 84023934 -92950206 - MER41-int LTR ERV1 -3789 2474 1998 3549 42 0 7 chrX 84023948 84024399 -92949741 + LTR7 LTR ERV1 1 448 -2 3487 54 0 7 chrX 84024411 84024859 -92949281 + LTR7 LTR ERV1 2 446 -4 3944 82 20 2 chrX 84024863 84025423 -92948717 + HERVH LTR ERV1 1 570 -7143 1273 186 0 90 chrX 84025569 84025848 -92948292 - AluJb SINE Alu -54 258 5 6306 228 26 30 chrX 84025853 84026442 -92947698 - L1PA16 LINE L1 -128 6038 5448 1813 179 147 5 chrX 84026442 84026817 -92947323 + MSTA LTR MaLR 1 428 0 6306 228 26 30 chrX 84026817 84029158 -92944982 - L1PA16 LINE L1 -718 5448 3124 3874 139 13 2 chrX 84029158 84029761 -92944379 - MER4B LTR ERV1 0 610 1 3879 162 18 25 chrX 84029761 84030821 -92943319 - MER4B-int LTR ERV1 0 6758 5658 2605 96 3 3 chrX 84030821 84031176 -92942964 + THE1A LTR MaLR 1 355 0 2449 114 16 3 chrX 84031177 84031546 -92942594 + THE1A-int LTR MaLR 2 375 -1205 2719 136 74 58 chrX 84031548 84032086 -92942054 - MER4B-int LTR ERV1 -1202 5556 5010 * 5072 143 20 8 chrX 84032083 84033118 -92941022 - MER4B-int LTR ERV1 -2276 4482 3021 1014 168 0 12 chrX 84033118 84033291 -92940849 - MER4B-int LTR ERV1 -2871 3887 3717 6973 142 39 33 chrX 84033293 84035005 -92939135 - MER4B-int LTR ERV1 -3745 3013 924 246 118 0 0 chrX 84035013 84035047 -92939093 + THE1B LTR MaLR 1 34 -330 * 1072 145 16 47 chrX 84035041 84035234 -92938906 + THE1B LTR MaLR 178 364 0 10563 122 13 5 chrX 84035234 84036801 -92937339 + THE1B-int LTR MaLR 1 1580 0 2027 129 66 26 chrX 84036801 84037151 -92936989 + THE1B LTR MaLR 1 364 0 2044 175 54 37 chrX 84037152 84037614 -92936526 - MER4B-int LTR ERV1 -5569 1189 720 1087 133 118 28 chrX 84037605 84037816 -92936324 - MER4B-int LTR ERV1 -6368 230 1 * 1654 176 7 4 chrX 84037843 84038115 -92936025 + AluJb SINE Alu 1 273 -39 3700 141 15 5 chrX 84038145 84038739 -92935401 - MER4B LTR ERV1 -10 600 1 4167 255 31 17 chrX 84038739 84040778 -92933362 - L1PA13 LINE L1 -3019 3778 1696 476 356 10 26 chrX 84040779 84040973 -92933167 - L1PA13 LINE L1 -6576 211 21 516 196 18 0 chrX 84041092 84041204 -92932936 - L1M4 LINE L1 -1194 4952 4839 502 275 39 29 chrX 84041241 84041448 -92932692 - L1M4 LINE L1 -3401 2745 2537 640 253 0 19 chrX 84041449 84041607 -92932533 + MLT1B LTR MaLR 1 155 -235 706 221 7 7 chrX 84041608 84041762 -92932378 + MLT2B1 LTR ERVL 3 156 -364 2636 138 31 13 chrX 84041895 84042350 -92931790 + MER4C LTR ERV1 3 465 0 2133 165 87 27 chrX 84042353 84042836 -92931304 + MER4C-int LTR ERV1 1 562 -6036 2463 142 22 10 chrX 84042867 84043275 -92930865 - MER4A LTR ERV1 0 664 252 767 263 35 28 chrX 84043805 84044060 -92930080 + PABL_B LTR ERV1 411 667 0 231 94 0 0 chrX 84044060 84044089 -92930051 + MER4A LTR ERV1 147 175 -489 1182 120 6 6 chrX 84044064 84044239 -92929901 - MER4A LTR ERV1 -489 175 1 314 139 0 101 chrX 84044283 84044362 -92929778 + MER4C-int LTR ERV1 751 821 -5777 295 196 31 52 chrX 84044393 84044490 -92929650 + MER4C-int LTR ERV1 1255 1349 -5249 3578 40 0 7 chrX 84044490 84044941 -92929199 - LTR7 LTR ERV1 -2 448 1 2412 80 74 0 chrX 84044941 84045306 -92928834 - HERVH LTR ERV1 0 7713 7322 1362 122 23 14 chrX 84045304 84045525 -92928615 - HERVH LTR ERV1 -1894 5819 5597 * 4288 149 1 3 chrX 84045522 84046195 -92927945 - HERVH LTR ERV1 -2564 5149 4478 3294 110 4 4 chrX 84046185 84046677 -92927463 - HERVH LTR ERV1 -3719 3994 3503 * 914 140 7 0 chrX 84046679 84046829 -92927311 - HERVH LTR ERV1 -4423 3290 3140 * 16128 89 10 19 chrX 84046808 84049219 -92924921 - HERVH LTR ERV1 -4718 2995 607 21876 83 32 6 chrX 84049334 84052548 -92921592 - L1P LINE L1 -2303 3843 210 304 361 0 8 chrX 84053123 84053256 -92920884 - MIR SINE MIR -130 132 1 340 259 117 95 chrX 84053300 84053508 -92920632 - MIR SINE MIR 0 262 28 2136 117 3 16 chrX 84053514 84053823 -92920317 + AluSg SINE Alu 1 305 -5 632 403 51 11 chrX 84053941 84054551 -92919589 + L2 LINE L2 2039 2672 -642 1176 245 48 54 chrX 84054627 84055019 -92919121 + MLT1B LTR MaLR 1 390 0 3046 227 51 14 chrX 84055019 84055783 -92918357 + MLT1B-int LTR MaLR 1 883 -488 1625 175 87 2 chrX 84056183 84056613 -92917527 + Ricksha DNA DNA 1 558 -1488 741 178 30 89 chrX 84056624 84056826 -92917314 + MLT2B3 LTR ERVL 358 547 -7 2246 186 28 0 chrX 84056826 84057250 -92916890 + Ricksha DNA DNA 902 1337 -1909 21 36 0 0 chrX 84107328 84107356 -92866784 + AT_rich Low_complexity Low_complexity 1 28 0 774 295 90 17 chrX 84107416 84107959 -92866181 + L1ME LINE L1 4409 4991 -1155 1051 183 147 65 chrX 84108168 84108314 -92865826 + AluJb SINE Alu 1 134 -168 279 0 0 0 chrX 84108314 84108345 -92865795 + (CA)n Simple_repeat Simple_repeat 2 32 0 1051 183 147 65 chrX 84108345 84108477 -92865663 + AluJb SINE Alu 134 302 0 254 227 31 0 chrX 84108523 84108620 -92865520 + (TA)n Simple_repeat Simple_repeat 1 100 0 3755 86 2 6 chrX 84108775 84109301 -92864839 + L1PA7 LINE L1 5624 6147 -7 256 359 33 14 chrX 84109361 84109573 -92864567 + L1ME LINE L1 5473 5688 -476 323 341 36 18 chrX 84109843 84110010 -92864130 + MLT1I LTR MaLR 221 390 -19 332 22 22 0 chrX 84110057 84110102 -92864038 + (TG)n Simple_repeat Simple_repeat 2 47 0 232 314 58 12 chrX 84111189 84111275 -92862865 + L1M3de LINE L1 1316 1405 -5248 2503 212 30 20 chrX 84111324 84111590 -92862550 + L1MB1 LINE L1 4681 4943 -1225 189 0 0 0 chrX 84111590 84111611 -92862529 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2503 212 30 20 chrX 84111611 84112123 -92862017 + L1MB1 LINE L1 4943 5448 -720 2503 177 44 15 chrX 84112123 84112307 -92861833 + L1MB1 LINE L1 5605 5782 -386 276 91 0 0 chrX 84112307 84112351 -92861789 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 2503 177 44 15 chrX 84112351 84112711 -92861429 + L1MB1 LINE L1 5782 6168 0 2503 212 30 20 chrX 84112711 84112738 -92861402 + L1MB1 LINE L1 5448 6168 0 5583 203 61 21 chrX 84112740 84113011 -92861129 + L1M3f LINE L1 4 263 -5234 1709 129 3 71 chrX 84113011 84113306 -92860834 - AluSx SINE Alu -37 275 1 5583 203 61 21 chrX 84113306 84114413 -92859727 + L1M3f LINE L1 263 1432 -4065 2062 219 23 7 chrX 84114558 84114987 -92859153 + HUERS-P3 LTR ERV1 6475 6910 -2009 448 248 0 16 chrX 84114985 84115110 -92859030 + HUERS-P3 LTR ERV1 6860 6982 -1937 * 582 166 28 14 chrX 84115120 84115265 -92858875 + HUERS-P3 LTR ERV1 3977 4123 -3693 1247 162 2 15 chrX 84115578 84115814 -92858326 + HUERS-P3 LTR ERV1 7163 8893 -26 2508 208 69 18 chrX 84115827 84116437 -92857703 + LTR9B LTR ERV1 4 644 0 9859 136 58 12 chrX 84116437 84118786 -92855354 - L1PBa LINE L1 -3621 3241 636 1183 126 37 0 chrX 84118788 84118979 -92855161 - L1PBa LINE L1 -6663 200 3 214 270 0 0 chrX 84118979 84119042 -92855098 + T-rich Low_complexity Low_complexity 1 63 0 26 30 0 0 chrX 84119374 84119407 -92854733 + AT_rich Low_complexity Low_complexity 1 33 0 1738 71 17 0 chrX 84119407 84119645 -92854495 - L1PA8 LINE L1 -6 6166 5925 12635 204 26 16 chrX 84119647 84122589 -92851551 - L1M1 LINE L1 -1751 5814 17 417 251 38 6 chrX 84122601 84122784 -92851356 - L1 LINE L1 -2884 3262 3074 1718 271 72 31 chrX 84122901 84124231 -92849909 - L1 LINE L1 -1279 4867 3416 902 223 82 53 chrX 84124236 84124411 -92849729 - MLT1D LTR MaLR -2 503 316 243 79 0 0 chrX 84124411 84124449 -92849691 + (TTG)n Simple_repeat Simple_repeat 1 38 0 902 223 82 53 chrX 84124449 84124555 -92849585 - MLT1D LTR MaLR -189 316 214 1639 243 119 11 chrX 84124555 84125007 -92849133 - MLT1D LTR MaLR 0 505 5 592 301 5 12 chrX 84125019 84125230 -92848910 - MLT1D LTR MaLR -327 178 1 2109 244 57 48 chrX 84125235 84126282 -92847858 - L1 LINE L1 -2734 3412 2356 285 327 88 24 chrX 84126428 84126725 -92847415 - L1MCc LINE L1 -5998 425 110 978 232 10 27 chrX 84126921 84127214 -92846926 + L1 LINE L1 4542 4829 -1317 2264 114 0 16 chrX 84127235 84127550 -92846590 - AluSx SINE Alu -2 310 1 415 223 80 0 chrX 84127550 84127662 -92846478 + Ricksha DNA DNA 6 126 -1920 * 823 113 0 35 chrX 84127659 84127800 -92846340 + Ricksha DNA DNA 232 367 -1679 13934 194 60 19 chrX 84127804 84130730 -92843410 + L1M1 LINE L1 13 3057 -4508 583 158 0 33 chrX 84130731 84130851 -92843289 + AluSq/x SINE Alu 2 117 -196 1888 274 47 28 chrX 84131026 84131897 -92842243 - L1MC4a LINE L1 -1655 6153 5266 23 0 0 0 chrX 84132027 84132050 -92842090 + AT_rich Low_complexity Low_complexity 1 23 0 537 104 0 0 chrX 84132972 84133049 -92841091 + MADE1 DNA Mariner 4 80 0 587 260 88 15 chrX 84133257 84133461 -92840679 - L1ME2 LINE L1 -11 6153 5935 415 273 236 6 chrX 84134146 84134311 -92839829 + MIR SINE MIR 53 255 -7 255 371 62 51 chrX 84136931 84137109 -92837031 + MIR3 SINE MIR 10 189 -19 294 275 92 109 chrX 84137141 84137370 -92836770 + MLT1I LTR MaLR 1 225 -184 1108 196 11 0 chrX 84137470 84137654 -92836486 - HUERS-P3 LTR ERV1 -2520 6399 6214 * 2646 144 39 5 chrX 84137638 84138047 -92836093 - HUERS-P3 LTR ERV1 -3596 5323 4901 891 166 22 0 chrX 84138046 84138185 -92835955 - HUERS-P3 LTR ERV1 -4239 4680 4539 * 7710 210 34 23 chrX 84138178 84140460 -92833680 - HUERS-P3 LTR ERV1 -5314 2104 742 1470 198 44 25 chrX 84140472 84140796 -92833344 - HUERS-P3 LTR ERV1 -6610 481 239 294 200 129 0 chrX 84140795 84140865 -92833275 - HUERS-P3 LTR ERV1 -8840 79 1 * 2241 217 79 43 chrX 84140865 84141381 -92832759 - LTR9B LTR ERV1 0 644 148 2141 123 13 0 chrX 84141381 84141690 -92832450 + AluSq SINE Alu 1 313 0 354 45 0 0 chrX 84141692 84141736 -92832404 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 2241 217 79 43 chrX 84141736 84141838 -92832302 - LTR9B LTR ERV1 -496 148 1 10822 229 34 3 chrX 84141839 84144123 -92830017 + L1PB1 LINE L1 2523 4912 -1234 180 0 0 0 chrX 84144123 84144143 -92829997 + (CAA)n Simple_repeat Simple_repeat 2 21 0 10822 229 34 3 chrX 84144143 84144651 -92829489 + L1PB1 LINE L1 4912 5403 -743 1758 108 16 42 chrX 84144659 84144966 -92829174 - MER4A-int LTR ERV1 -4496 2102 1804 1412 94 56 82 chrX 84144964 84145345 -92828795 - MER4A-int LTR ERV1 -4210 1268 503 * 2747 102 128 85 chrX 84145331 84145907 -92828233 - MER4A-int LTR ERV1 -5997 601 1 1572 148 37 50 chrX 84145910 84146207 -92827933 - MER4A LTR ERV1 0 664 372 1764 120 0 41 chrX 84146336 84146628 -92827512 + L1PB1 LINE L1 5504 5783 -368 1605 147 24 0 chrX 84146627 84146879 -92827261 - THE1C LTR MaLR -111 264 7 * 8817 133 46 52 chrX 84146885 84148475 -92825665 - THE1C-int LTR MaLR 0 1580 1 2368 121 34 0 chrX 84148483 84148838 -92825302 - THE1C LTR MaLR -8 367 1 2065 105 6 6 chrX 84148838 84149153 -92824987 + L1PB1 LINE L1 5794 6108 -43 447 186 0 0 chrX 84149153 84149255 -92824885 + (TA)n Simple_repeat Simple_repeat 2 103 0 11604 197 22 41 chrX 84149260 84152555 -92821585 + L1PB4 LINE L1 2754 6054 -1511 526 196 0 0 chrX 84152555 84152647 -92821493 + AluJ/FLAM SINE Alu 10 101 -211 11604 197 22 41 chrX 84152647 84153178 -92820962 + L1PB4 LINE L1 6054 6593 -972 1247 175 24 17 chrX 84153178 84153475 -92820665 + L1MA2 LINE L1 5998 6296 -8 1015 234 39 6 chrX 84153653 84153965 -92820175 + L1MB3 LINE L1 2317 2638 -4848 2403 157 4 82 chrX 84154050 84154547 -92819593 + THE1C-int LTR MaLR 174 631 -949 1933 142 17 2 chrX 84154544 84154960 -92819180 + THE1C-int LTR MaLR 1090 1580 0 * 679 196 55 40 chrX 84154933 84154960 -92819180 + L1MA1 LINE L1 6009 6034 -268 * 1716 180 55 17 chrX 84154960 84155321 -92818819 + THE1C LTR MaLR 1 375 0 679 196 55 40 chrX 84155321 84155492 -92818648 + L1MA1 LINE L1 6034 6210 -92 1442 226 48 3 chrX 84155492 84155649 -92818491 + L1PB4 LINE L1 7028 7177 -398 222 37 0 0 chrX 84155649 84155676 -92818464 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 270 0 0 0 chrX 84155675 84155705 -92818435 + (CA)n Simple_repeat Simple_repeat 2 31 0 1442 226 48 3 chrX 84155676 84155905 -92818235 + L1PB4 LINE L1 7177 7401 -174 607 162 43 8 chrX 84156010 84156127 -92818013 + AluSc SINE Alu 186 306 -3 5199 212 40 27 chrX 84156130 84157092 -92817048 + L1MB3 LINE L1 3056 4004 -3561 339 25 0 0 chrX 84157092 84157132 -92817008 + (CAA)n Simple_repeat Simple_repeat 3 42 0 5199 212 40 27 chrX 84157132 84158215 -92815925 + L1MB3 LINE L1 4004 5127 -2438 2296 255 21 38 chrX 84160474 84161183 -92812957 + MER70-int LTR ERVL 457 1153 -3870 567 186 12 124 chrX 84161292 84161453 -92812687 - MER44D DNA MER2_type -196 413 1 923 272 52 16 chrX 84161464 84161832 -92812308 + L1MB3 LINE L1 6271 6651 -914 195 204 0 0 chrX 84161836 84161880 -92812260 + (TA)n Simple_repeat Simple_repeat 1 44 0 1051 189 119 0 chrX 84161884 84162128 -92812012 + L1MA9 LINE L1 5796 6068 -244 362 235 40 7 chrX 84162138 84162281 -92811859 + L1MA9 LINE L1 6183 6333 -1 3374 211 22 28 chrX 84162282 84163098 -92811042 + L1MB3 LINE L1 6784 7594 -8 3027 278 62 45 chrX 84163199 84164802 -92809338 + L1MD3 LINE L1 5648 7278 -717 516 204 106 0 chrX 84164802 84164915 -92809225 + MLT1F1 LTR MaLR 1 125 -442 967 229 49 4 chrX 84164921 84165165 -92808975 + L1MD3 LINE L1 7411 7665 -330 4714 142 12 27 chrX 84165181 84165983 -92808157 - LTR25 LTR ERV1 0 794 5 1087 250 31 9 chrX 84165991 84166315 -92807825 + L1MD3 LINE L1 7645 7975 -20 427 273 14 14 chrX 84166525 84166664 -92807476 + L1ME LINE L1 5548 5686 -476 2933 146 63 2 chrX 84166664 84167140 -92807000 - LTR1 LTR ERV1 0 785 280 1054 118 12 6 chrX 84167140 84167310 -92806830 - MER9 LTR ERVK 0 511 341 7318 67 0 0 chrX 84167311 84168227 -92805913 - HERVK9 LTR ERVK -1373 4543 3628 3591 104 0 2 chrX 84168227 84168729 -92805411 - HERVK9 LTR ERVK -3019 2897 2397 7577 68 139 3 chrX 84168729 84169804 -92804336 + MER11B LTR ERVK 1 1222 -14 15557 100 25 25 chrX 84169843 84171418 -92802722 - HERVK9 LTR ERVK -3514 2402 757 201 246 0 87 chrX 84171418 84171487 -92802653 - MER5B DNA MER1_type -61 117 55 15557 100 25 25 chrX 84171487 84172245 -92801895 - HERVK9 LTR ERVK -5158 758 1 3305 120 14 6 chrX 84172245 84172752 -92801388 - MER9 LTR ERVK 0 511 1 752 166 14 7 chrX 84172849 84172988 -92801152 - LTR1 LTR ERV1 -534 251 112 326 387 28 11 chrX 84173124 84173305 -92800835 + MIR3 SINE MIR 20 203 -5 23 0 0 0 chrX 84173553 84173576 -92800564 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 84173597 84173625 -92800515 + AT_rich Low_complexity Low_complexity 1 28 0 186 412 15 30 chrX 84173744 84173875 -92800265 - L2 LINE L2 -248 3024 2896 20247 207 23 26 chrX 84173885 84176641 -92797499 - L1PA11 LINE L1 -2 7610 4847 1975 143 10 0 chrX 84176641 84176934 -92797206 - AluSx SINE Alu -6 306 11 20247 207 23 26 chrX 84176934 84181224 -92792916 - L1PA11 LINE L1 -2765 4847 39 22 0 0 0 chrX 84182465 84182487 -92791653 + AT_rich Low_complexity Low_complexity 1 22 0 5749 170 22 3 chrX 84182500 84184345 -92789795 + L1MA2 LINE L1 4355 6235 -69 229 175 0 0 chrX 84184999 84185039 -92789101 + Tigger6b DNA MER2_type 789 828 -769 203 303 15 0 chrX 84186146 84186212 -92787928 + GA-rich Low_complexity Low_complexity 3 69 0 896 225 41 4 chrX 84186804 84187048 -92787092 - L1 LINE L1 -1828 4318 4066 1157 140 57 0 chrX 84187052 84187245 -92786895 + MLT2A2 LTR ERVL 1 204 -249 5124 167 20 4 chrX 84187245 84188700 -92785440 + L1MA3 LINE L1 4676 6153 -152 2812 194 15 67 chrX 84188800 84189522 -92784618 + L1MB1 LINE L1 5483 6167 -1 331 317 24 16 chrX 84189656 84189779 -92784361 + MIR SINE MIR 20 143 -119 9965 129 11 3 chrX 84189842 84191435 -92782705 + L1P LINE L1 3743 5348 -798 22 0 0 0 chrX 84192450 84192472 -92781668 + AT_rich Low_complexity Low_complexity 1 22 0 2210 193 44 24 chrX 84192478 84193254 -92780886 - L1M2 LINE L1 -541 5771 4978 1817 239 27 10 chrX 84193249 84193735 -92780405 - L1M2 LINE L1 -3129 3017 2524 * 7909 122 65 1 chrX 84193743 84194948 -92779192 + HSMAR1 DNA Mariner 1 1282 -5 519 326 28 14 chrX 84194948 84195239 -92778901 - L1M2 LINE L1 -3631 2515 2221 2460 227 53 26 chrX 84195458 84196665 -92777475 + L1MA9 LINE L1 2974 4190 -3375 1441 224 34 118 chrX 84196665 84197130 -92777010 + MSTB1 LTR MaLR 1 426 -6 3741 194 77 10 chrX 84197140 84198107 -92776033 + L1MA9 LINE L1 4190 5220 -2345 1912 211 45 5 chrX 84198108 84198510 -92775630 - MSTB1 LTR MaLR 0 432 15 4567 213 28 3 chrX 84198518 84199599 -92774541 + L1MA9 LINE L1 5204 6311 -1254 34 55 0 0 chrX 84199612 84199667 -92774473 + AT_rich Low_complexity Low_complexity 1 55 0 32 0 0 0 chrX 84199745 84199777 -92774363 + AT_rich Low_complexity Low_complexity 1 32 0 5356 129 2 1 chrX 84199777 84200589 -92773551 - L1PA14 LINE L1 -3 6158 5346 854 137 7 0 chrX 84200583 84200729 -92773411 + L1PA14 LINE L1 5215 5361 -785 * 552 104 0 0 chrX 84200726 84200803 -92773337 + L1P4 LINE L1 5620 5696 -465 * 6953 215 22 17 chrX 84200800 84202509 -92771631 - L1P LINE L1 -1922 4224 2507 1941 194 96 39 chrX 84202990 84203380 -92770760 + MER39 LTR ERV1 1 491 -216 2269 169 43 12 chrX 84203380 84203795 -92770345 - MSTA LTR MaLR 0 428 1 1941 194 96 39 chrX 84203795 84204026 -92770114 + MER39 LTR ERV1 491 707 0 2355 68 19 7 chrX 84204057 84204366 -92769774 + AluSp SINE Alu 1 313 0 23 0 0 0 chrX 84204903 84204926 -92769214 + AT_rich Low_complexity Low_complexity 1 23 0 199 187 22 132 chrX 84205150 84205241 -92768899 + MIR SINE MIR 114 194 -68 3997 171 30 12 chrX 84205297 84206096 -92768044 + L1MA9 LINE L1 6881 7693 -38 676 308 21 13 chrX 84206248 84206485 -92767655 - LTR16A LTR ERVL -6 444 206 753 131 97 19 chrX 84207640 84207846 -92766294 - L1MA9 LINE L1 -6 6306 6085 813 309 60 29 chrX 84207961 84209127 -92765013 - L1MEc LINE L1 -3145 3070 1914 2071 112 3 9 chrX 84209143 84209464 -92764676 - L1PB1 LINE L1 0 6151 5833 3988 167 2 7 chrX 84209464 84210588 -92763552 + L1P5 LINE L1 4522 5640 -511 317 263 145 55 chrX 84210760 84211015 -92763125 + L1MB2 LINE L1 3493 3770 -2376 25 51 0 0 chrX 84211075 84211114 -92763026 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chrX 84211148 84211173 -92762967 + AT_rich Low_complexity Low_complexity 1 25 0 1246 303 70 28 chrX 84211202 84212278 -92761862 + L1ME3A LINE L1 4080 5200 -946 1029 183 147 65 chrX 84212286 84212432 -92761708 + AluJb SINE Alu 1 134 -168 243 0 0 0 chrX 84212432 84212459 -92761681 + (CA)n Simple_repeat Simple_repeat 2 28 0 1029 183 147 65 chrX 84212459 84212591 -92761549 + AluJb SINE Alu 134 302 0 254 227 31 0 chrX 84212637 84212734 -92761406 + (TA)n Simple_repeat Simple_repeat 1 100 0 1475 273 82 30 chrX 84212812 84212888 -92761252 + L1ME3A LINE L1 5320 5391 -779 3971 68 2 6 chrX 84212888 84213419 -92760721 + L1PA7 LINE L1 5624 6152 -2 1475 273 82 30 chrX 84213419 84214095 -92760045 + L1ME3A LINE L1 5391 6119 -51 23 0 0 0 chrX 84214625 84214648 -92759492 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 84214846 84214883 -92759257 + AT_rich Low_complexity Low_complexity 1 37 0 4154 231 81 12 chrX 84215099 84215337 -92758803 + L1MB2 LINE L1 3933 4153 -2018 4378 162 64 57 chrX 84215337 84216401 -92757739 + MER11C LTR ERVK 1 1071 0 4154 231 81 12 chrX 84216401 84218264 -92755876 + L1MB2 LINE L1 4153 6167 -4 1216 217 65 50 chrX 84218297 84218757 -92755383 + L1M4 LINE L1 4627 5093 -1053 * 6009 162 30 21 chrX 84218756 84219688 -92754452 - L1MA2 LINE L1 0 7723 6801 1938 159 10 3 chrX 84219688 84219996 -92754144 - AluSx SINE Alu 0 312 3 6009 162 30 21 chrX 84219996 84220419 -92753721 - L1MA2 LINE L1 -922 6801 6383 1935 146 50 31 chrX 84220419 84220776 -92753364 + THE1B LTR MaLR 1 364 0 10853 116 15 1 chrX 84220776 84222333 -92751807 + THE1B-int LTR MaLR 1 1580 0 1751 170 45 31 chrX 84222333 84222692 -92751448 + THE1B LTR MaLR 1 364 0 6009 162 30 21 chrX 84222692 84223368 -92750772 - L1MA2 LINE L1 -1339 6384 3255 3930 136 40 24 chrX 84223472 84224222 -92749918 - L1MA2 LINE L1 -4533 3032 2271 * 4503 212 45 23 chrX 84224203 84224236 -92749904 - L1PB3 LINE L1 -2 6152 6121 240 86 0 0 chrX 84224236 84224271 -92749869 + (TTG)n Simple_repeat Simple_repeat 2 36 0 4503 212 45 23 chrX 84224271 84225937 -92748203 - L1PB3 LINE L1 -33 6121 4391 217 0 61 0 chrX 84225937 84225970 -92748170 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 4503 212 45 23 chrX 84225970 84226294 -92747846 - L1PB3 LINE L1 -1763 4391 4076 10980 198 40 18 chrX 84226296 84228474 -92745666 - L1MA2 LINE L1 -5326 2239 16 21 57 0 0 chrX 84230231 84230266 -92743874 + AT_rich Low_complexity Low_complexity 1 35 0 326 308 145 13 chrX 84230409 84230568 -92743572 + MIR3 SINE MIR 21 200 -8 581 230 152 5 chrX 84231834 84232038 -92742102 + L1MD3 LINE L1 7762 7995 0 21 0 0 0 chrX 84232104 84232125 -92742015 + AT_rich Low_complexity Low_complexity 1 21 0 396 250 154 0 chrX 84232127 84232231 -92741909 - Tigger6a DNA MER2_type -1 1082 963 9252 223 32 16 chrX 84232254 84234106 -92740034 + L1PA13 LINE L1 3 1884 -4903 * 16193 200 24 29 chrX 84234101 84237779 -92736361 + L1PA13 LINE L1 2142 5783 -1031 1904 59 8 23 chrX 84237779 84238058 -92736082 + AluY SINE Alu 30 304 0 16193 200 24 29 chrX 84238058 84238866 -92735274 + L1PA13 LINE L1 5783 6593 -221 3240 214 31 10 chrX 84238966 84239686 -92734454 - Tigger6a DNA MER2_type -248 835 101 1963 194 19 75 chrX 84239689 84239881 -92734259 + L1MB7 LINE L1 5679 5880 -304 2298 86 0 10 chrX 84239881 84240182 -92733958 + AluY SINE Alu 1 298 -13 1963 194 19 75 chrX 84240182 84240511 -92733629 + L1MB7 LINE L1 5880 6171 -13 9845 120 10 40 chrX 84240552 84242068 -92732072 - THE1B-int LTR MaLR -109 1471 1 2247 134 37 0 chrX 84242068 84242419 -92731721 - THE1B LTR MaLR 0 364 1 357 353 55 31 chrX 84242422 84242807 -92731333 - MER52-int LTR ERV1 -3308 3783 3390 5034 225 32 22 chrX 84243071 84243695 -92730445 - MER52-int LTR ERV1 -3842 3363 2724 2613 52 3 0 chrX 84243695 84244005 -92730135 - AluY SINE Alu 0 311 1 5034 225 32 22 chrX 84244005 84244417 -92729723 - MER52-int LTR ERV1 -4481 2724 2317 4334 207 20 81 chrX 84244520 84245636 -92728504 - MER52-int LTR ERV1 -4924 2281 1234 1869 204 17 2 chrX 84245739 84246151 -92727989 + L1MB7 LINE L1 5505 5922 -262 25 105 0 0 chrX 84246524 84246619 -92727521 + AT_rich Low_complexity Low_complexity 1 95 0 662 202 49 66 chrX 84246661 84246904 -92727236 + L1MB7 LINE L1 5927 6165 -19 898 92 43 6 chrX 84247027 84247373 -92726767 + (TA)n Simple_repeat Simple_repeat 1 359 0 357 162 0 0 chrX 84247437 84247505 -92726635 + L1PB1 LINE L1 5769 5836 -315 195 42 0 0 chrX 84247529 84247553 -92726587 + (CACCAT)n Simple_repeat Simple_repeat 1 24 0 1598 253 10 0 chrX 84247593 84247977 -92726163 - MLT1B LTR MaLR 0 390 3 1615 191 0 14 chrX 84247997 84248285 -92725855 + AluJo SINE Alu 7 290 -22 314 335 17 0 chrX 84248295 84248468 -92725672 - L1MEc LINE L1 -4598 1798 1623 * 3063 218 23 43 chrX 84248460 84248887 -92725253 - L1MC1 LINE L1 0 6333 5926 2637 45 0 3 chrX 84248887 84249199 -92724941 + AluY SINE Alu 1 311 0 3063 218 23 43 chrX 84249199 84249542 -92724598 - L1MC1 LINE L1 -407 5926 5578 576 263 8 0 chrX 84249544 84249677 -92724463 + AluJo SINE Alu 1 134 -178 1078 215 43 0 chrX 84249680 84249936 -92724204 - L1MC1 LINE L1 -749 5595 5329 204 286 92 41 chrX 84250037 84250135 -92724005 + MIR SINE MIR 90 192 -70 1128 218 16 126 chrX 84250327 84250813 -92723327 - L1MD3 LINE L1 -16 7979 7547 24 32 0 0 chrX 84251786 84251817 -92722323 + AT_rich Low_complexity Low_complexity 1 31 0 902 115 36 0 chrX 84253670 84253809 -92720331 - AluSq SINE Alu -25 288 145 759 127 0 0 chrX 84253949 84254059 -92720081 - AluSq/x SINE Alu -203 110 1 472 333 35 0 chrX 84254416 84254587 -92719553 - MIR SINE MIR -23 239 63 408 268 57 8 chrX 84254721 84254844 -92719296 + MIR SINE MIR 69 197 -65 1461 152 14 95 chrX 84255045 84255393 -92718747 - L1MA4A LINE L1 -12 6291 5972 21 57 0 0 chrX 84255459 84255494 -92718646 + AT_rich Low_complexity Low_complexity 1 35 0 379 169 13 0 chrX 84255682 84255759 -92718381 - MADE1 DNA Mariner -2 78 1 21 82 0 0 chrX 84255759 84255808 -92718332 + AT_rich Low_complexity Low_complexity 1 49 0 23 33 0 0 chrX 84255963 84255993 -92718147 + AT_rich Low_complexity Low_complexity 1 30 0 358 310 47 78 chrX 84256312 84256763 -92717377 - HAL1 LINE L1 -949 1558 1122 1369 113 28 5 chrX 84257003 84257216 -92716924 + MER4C LTR ERV1 1 218 -247 255 283 141 0 chrX 84257875 84257967 -92716173 - MIR SINE MIR -13 249 145 200 169 17 51 chrX 84258045 84258104 -92716036 + (TA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chrX 84258256 84258277 -92715863 + AT_rich Low_complexity Low_complexity 1 21 0 404 289 37 7 chrX 84258292 84258427 -92715713 - MIR SINE MIR -38 224 86 566 263 48 53 chrX 84258662 84258890 -92715250 + MIR SINE MIR 12 238 -24 3748 116 85 12 chrX 84259270 84259954 -92714186 - L1MA1 LINE L1 0 6302 5569 982 188 70 39 chrX 84260021 84260277 -92713863 + HUERS-P1 LTR ERV1 5936 6199 -132 790 258 104 12 chrX 84260296 84260536 -92713604 + HUERS-P1 LTR ERV1 5994 6255 -8 2841 196 72 23 chrX 84260544 84261237 -92712903 + LTR8A LTR ERV1 1 727 0 373 282 36 47 chrX 84261549 84261914 -92712226 - L1MEc LINE L1 -4780 1616 1256 355 303 149 36 chrX 84262055 84262336 -92711804 + L2 LINE L2 2995 3307 -6 25284 149 10 16 chrX 84262758 84265180 -92708960 - L1PA8A LINE L1 0 6446 4010 459 0 0 0 chrX 84265180 84265231 -92708909 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 25284 149 10 16 chrX 84265231 84269230 -92704910 - L1PA8A LINE L1 -2436 4010 3 4169 189 34 24 chrX 84269230 84269760 -92704380 + MER4D LTR ERV1 7 551 -352 1487 209 0 27 chrX 84269760 84270078 -92704062 + AluJb SINE Alu 1 310 0 4169 189 34 24 chrX 84270078 84270405 -92703735 + MER4D LTR ERV1 551 873 -30 518 128 22 34 chrX 84270781 84270892 -92703248 - MLT1A2 LTR MaLR -9 381 260 * 2653 195 21 75 chrX 84270889 84271514 -92702626 - LTR59 LTR ERV1 -6 591 1 542 220 37 103 chrX 84271519 84271690 -92702450 - MLT1A2 LTR MaLR -116 258 102 2072 132 59 8 chrX 84271690 84272046 -92702094 - THE1C LTR MaLR -1 374 1 542 220 37 103 chrX 84272046 84272088 -92702052 - MLT1A2 LTR MaLR -272 102 59 7233 131 134 57 chrX 84272089 84273518 -92700622 - THE1C-int LTR MaLR -41 1539 1 2134 137 53 8 chrX 84273518 84273877 -92700263 - THE1C LTR MaLR 0 375 1 314 276 0 0 chrX 84273879 84273966 -92700174 - MLT1A2 LTR MaLR -283 91 5 1107 134 0 0 chrX 84274110 84274289 -92699851 + (TA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrX 84275427 84275448 -92698692 + AT_rich Low_complexity Low_complexity 1 21 0 208 245 35 133 chrX 84275731 84275874 -92698266 - L2 LINE L2 -235 3037 2909 8986 223 36 28 chrX 84275922 84277393 -92696747 + L1MA1 LINE L1 15 1507 -6058 2491 52 0 0 chrX 84277393 84277684 -92696456 - AluY SINE Alu -18 293 3 8986 223 36 28 chrX 84277684 84278234 -92695906 + L1MA1 LINE L1 1507 2051 -5514 8962 181 18 9 chrX 84278232 84281197 -92692943 + L1MA1 LINE L1 4733 7721 0 * 5127 153 21 17 chrX 84281594 84282558 -92691582 - L1MA3 LINE L1 0 7724 6757 7286 213 27 49 chrX 84282658 84282956 -92691184 - L1MA3 LINE L1 -805 6760 6457 916 72 20 13 chrX 84282956 84283109 -92691031 + (TTTC)n Simple_repeat Simple_repeat 2 155 0 1361 188 65 43 chrX 84283112 84283389 -92690751 - AluJb SINE Alu -19 283 1 7286 213 27 49 chrX 84283389 84284650 -92689490 - L1MA3 LINE L1 -1110 6455 5253 2592 164 17 0 chrX 84284650 84285119 -92689021 - L1MA2 LINE L1 -1 6303 5827 7286 213 27 49 chrX 84285119 84285637 -92688503 - L1MA3 LINE L1 -2312 5253 4725 2187 208 18 95 chrX 84285637 84286237 -92687903 - MLT2B3 LTR ERVL 0 554 1 34758 160 5 8 chrX 84286239 84286474 -92687666 - HERVL-B3 LTR ERVL -13 5641 5407 1587 123 0 13 chrX 84286474 84286709 -92687431 - L1PA8A LINE L1 0 6131 5900 4676 80 0 9 chrX 84286477 84287115 -92687025 - L1PA8A LINE L1 -3 6128 5497 34758 160 5 8 chrX 84286709 84292535 -92681605 - HERVL-B3 LTR ERVL -247 5407 1 1841 224 22 74 chrX 84292535 84293119 -92681021 - MLT2B3 LTR ERVL 0 554 1 2600 256 20 29 chrX 84293120 84294057 -92680083 - L1MA3 LINE L1 -2837 4728 3800 2341 237 6 8 chrX 84294054 84294526 -92679614 - L1MA3 LINE L1 -6772 793 323 * 498 151 46 118 chrX 84294536 84294688 -92679452 - L1MA3 LINE L1 -7406 159 19 638 276 25 78 chrX 84295290 84295573 -92678567 + MLT1A1 LTR MaLR 3 270 -95 242 222 33 11 chrX 84296701 84296791 -92677349 + (TA)n Simple_repeat Simple_repeat 1 92 0 337 323 30 50 chrX 84297097 84297298 -92676842 + MIR SINE MIR 21 217 -45 5176 224 68 4 chrX 84297489 84298719 -92675421 - L1P LINE L1 -1489 4657 3350 1990 114 14 0 chrX 84298719 84298999 -92675141 + AluSx SINE Alu 2 285 -27 4600 292 37 40 chrX 84299007 84300743 -92673397 - L1PA12 LINE L1 -5851 1730 1 328 329 63 27 chrX 84300784 84301215 -92672925 + L1M4 LINE L1 4378 4852 -1294 28 29 0 0 chrX 84302041 84302076 -92672064 + AT_rich Low_complexity Low_complexity 1 35 0 4244 258 28 7 chrX 84302108 84303233 -92670907 + L1MC1 LINE L1 28 1176 -5250 1715 285 79 43 chrX 84303241 84304685 -92669455 + L1MC1 LINE L1 1504 3124 -3302 1789 228 103 25 chrX 84304729 84305382 -92668758 + L1MC1 LINE L1 4686 5389 -1037 396 169 13 13 chrX 84305413 84305490 -92668650 + Tigger2 DNA MER2_type 1 77 -2641 552 296 20 7 chrX 84305519 84305671 -92668469 - MER8 DNA MER2_type -63 176 23 632 225 13 0 chrX 84305677 84305852 -92668288 + L1MC1 LINE L1 5437 5614 -825 11504 246 21 22 chrX 84305899 84311008 -92663132 + L1PA5 LINE L1 1 5118 -1679 7101 52 9 0 chrX 84311011 84312576 -92661564 + L1PA5 LINE L1 5233 6805 0 1789 183 31 103 chrX 84312582 84312619 -92661521 + L1MC1 LINE L1 5571 5609 -1004 5095 161 9 9 chrX 84312619 84313496 -92660644 + L1PA15 LINE L1 4453 5329 -836 2276 118 22 19 chrX 84313496 84313859 -92660281 - THE1B LTR MaLR 0 364 1 5095 161 9 9 chrX 84313859 84314689 -92659451 + L1PA15 LINE L1 5328 6157 -8 1789 183 31 103 chrX 84314689 84314976 -92659164 + L1MC1 LINE L1 5609 5915 -698 555 89 13 0 chrX 84314976 84315055 -92659085 + MADE1 DNA Mariner 1 80 0 1789 183 31 103 chrX 84315055 84315135 -92659005 + L1MC1 LINE L1 5915 5999 -614 2115 162 12 26 chrX 84315135 84315562 -92658578 + L1MA7 LINE L1 5865 6285 -6 1789 183 31 103 chrX 84315562 84315759 -92658381 + L1MC1 LINE L1 5999 6125 -488 1031 273 0 32 chrX 84315760 84315855 -92658285 + MLT2B3 LTR ERVL 190 287 -267 2301 68 3 19 chrX 84315855 84316162 -92657978 - AluY SINE Alu -9 302 1 1031 273 0 32 chrX 84316162 84316315 -92657825 + MLT2B3 LTR ERVL 287 430 -124 872 263 94 28 chrX 84316324 84316579 -92657561 + ERVL LTR ERVL 546 817 -4947 1472 213 147 17 chrX 84316681 84317089 -92657051 - LTR48 LTR ERV1 -326 461 1 2453 202 38 90 chrX 84317101 84318245 -92655895 - L1MB3 LINE L1 -119 6128 5042 1817 239 27 10 chrX 84318240 84318726 -92655414 - L1MB3 LINE L1 -3129 3081 2588 * 8146 114 64 1 chrX 84318734 84319940 -92654200 + HSMAR1 DNA Mariner 1 1282 -5 1095 232 39 73 chrX 84319940 84320464 -92653676 - L1MB3 LINE L1 -3631 2579 2087 1246 179 46 0 chrX 84320464 84320727 -92653413 - L1MA8 LINE L1 0 6291 6017 1095 232 39 73 chrX 84320727 84320945 -92653195 - L1MB3 LINE L1 -4123 2087 1863 2372 270 97 14 chrX 84321103 84322753 -92651387 - L1MB3 LINE L1 -4398 1813 1 473 309 52 44 chrX 84322849 84323098 -92651042 - MIR SINE MIR -11 251 1 233 247 12 0 chrX 84323598 84323679 -92650461 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 57 0 0 chrX 84324501 84324536 -92649604 + AT_rich Low_complexity Low_complexity 1 35 0 49 32 0 0 chrX 84325220 84325283 -92648857 + AT_rich Low_complexity Low_complexity 1 63 0 3791 297 65 27 chrX 84325610 84327088 -92647052 + L1M3c LINE L1 6 1520 -4691 2046 136 0 19 chrX 84327088 84327404 -92646736 + AluSx SINE Alu 1 310 -2 3791 297 65 27 chrX 84327404 84327754 -92646386 + L1M3c LINE L1 1520 1855 -4356 2011 199 42 10 chrX 84327782 84328188 -92645952 - MSTB1 LTR MaLR -13 419 1 2227 219 73 20 chrX 84328215 84328692 -92645448 + L1MA10 LINE L1 5696 6213 -121 353 39 20 0 chrX 84328692 84328743 -92645397 + (TA)n Simple_repeat Simple_repeat 1 52 0 2227 219 73 20 chrX 84328743 84328871 -92645269 + L1MA10 LINE L1 6213 6333 -1 8330 259 42 23 chrX 84328872 84329546 -92644594 + L1M3c LINE L1 2248 2908 -3485 436 129 9 103 chrX 84329546 84329662 -92644478 - L1MA10 LINE L1 0 6334 6230 8330 259 42 23 chrX 84329662 84332327 -92641813 + L1M3c LINE L1 2908 5650 -743 227 333 67 0 chrX 84532392 84532452 -92441688 - L2 LINE L2 -35 3237 3174 295 283 9 26 chrX 84533376 84533489 -92440651 - L1ME LINE L1 -543 5578 5468 22 0 0 0 chrX 84536641 84536663 -92437477 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 84536739 84536764 -92437376 + (T)n Simple_repeat Simple_repeat 1 25 0 280 311 46 57 chrX 84536825 84537006 -92437134 + MIR SINE MIR 38 212 -50 275 353 71 24 chrX 84538064 84538234 -92435906 - L2 LINE L2 -182 3090 2913 808 199 37 12 chrX 84538481 84538642 -92435498 + FRAM SINE Alu 4 168 -8 2345 89 3 10 chrX 84538704 84539017 -92435123 + AluSp SINE Alu 1 311 -2 1924 163 0 3 chrX 84540448 84540761 -92433379 - AluJo SINE Alu 0 312 1 181 211 0 105 chrX 84541117 84541174 -92432966 + L2 LINE L2 3214 3264 -8 2253 107 0 0 chrX 84541821 84542120 -92432020 + AluSg SINE Alu 1 299 -11 300 82 20 20 chrX 84542242 84542291 -92431849 - Alu SINE Alu -5 297 249 28 0 0 0 chrX 84544387 84544415 -92429725 + AT_rich Low_complexity Low_complexity 1 28 0 432 0 0 0 chrX 84545203 84545251 -92428889 + (ATG)n Simple_repeat Simple_repeat 2 49 0 2158 96 7 0 chrX 84545251 84545533 -92428607 - AluSq SINE Alu -29 284 1 1404 205 0 25 chrX 84545842 84546159 -92427981 - AluJo SINE Alu -3 309 1 2133 89 7 3 chrX 84549371 84549705 -92424435 - AluSq SINE Alu 0 335 1 249 196 0 0 chrX 84549793 84549849 -92424291 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 2120 105 3 14 chrX 84550019 84550313 -92423827 + AluSx SINE Alu 1 291 -21 187 255 170 11 chrX 84550460 84550554 -92423586 - L2 LINE L2 -1 3312 3204 1716 178 3 3 chrX 84550943 84551230 -92422910 - AluJo SINE Alu -25 287 1 210 341 93 59 chrX 84552408 84552783 -92421357 - L2 LINE L2 -694 2620 2233 334 239 19 19 chrX 84552788 84552947 -92421193 + (TATAA)n Simple_repeat Simple_repeat 5 163 0 193 304 81 37 chrX 84552948 84553109 -92421031 - L2 LINE L2 -1087 2227 2060 1875 128 31 3 chrX 84553587 84553876 -92420264 - AluSq SINE Alu -16 297 1 331 285 131 30 chrX 84553883 84554056 -92420084 - MIR SINE MIR -67 141 4 203 298 70 70 chrX 84554989 84555160 -92418980 + L2 LINE L2 679 849 -2465 2105 112 28 0 chrX 84555269 84555556 -92418584 - AluSx SINE Alu -17 295 1 257 212 26 88 chrX 84556041 84556154 -92417986 + L2 LINE L2 3134 3239 -74 642 247 110 0 chrX 84556300 84556482 -92417658 + MIR SINE MIR 2 203 -59 24 0 0 0 chrX 84556798 84556822 -92417318 + AT_rich Low_complexity Low_complexity 1 24 0 2418 76 0 22 chrX 84557076 84557390 -92416750 + AluSp SINE Alu 6 312 -1 186 358 74 0 chrX 84557399 84557494 -92416646 + MIR3 SINE MIR 78 179 -29 1914 185 3 6 chrX 84557521 84557862 -92416278 - MER58B DNA MER1_type 0 341 2 2202 114 7 0 chrX 84558353 84558661 -92415479 + AluSg SINE Alu 1 310 0 355 260 160 0 chrX 84558676 84558776 -92415364 + L2 LINE L2 2730 2845 -469 2654 38 0 13 chrX 84559558 84559872 -92414268 - AluY SINE Alu 0 311 2 2381 67 0 16 chrX 84560594 84560910 -92413230 - AluY SINE Alu 0 311 1 354 45 0 0 chrX 84562864 84562908 -92411232 + (TC)n Simple_repeat Simple_repeat 1 44 0 23 33 0 0 chrX 84562980 84563010 -92411130 + AT_rich Low_complexity Low_complexity 1 30 0 2472 68 0 0 chrX 84563354 84563650 -92410490 + AluY SINE Alu 1 296 -15 572 309 56 6 chrX 84563912 84564115 -92410025 - MIR SINE MIR -49 213 2 554 198 45 0 chrX 84564258 84564369 -92409771 + MIR SINE MIR 147 262 0 2321 80 0 7 chrX 84564391 84564691 -92409449 - AluSc SINE Alu -11 298 1 305 287 128 52 chrX 84564712 84564865 -92409275 + L3 LINE CR1 1174 1355 -222 2465 73 0 0 chrX 84564865 84565167 -92408973 - AluSc SINE Alu -7 302 1 305 287 128 52 chrX 84565167 84565264 -92408876 + L3 LINE CR1 1355 1443 -134 2275 104 0 7 chrX 84565460 84565759 -92408381 - AluSx SINE Alu -15 297 1 767 217 22 54 chrX 84565801 84565869 -92408271 - MER45A DNA AcHobo -1403 178 109 2438 84 0 0 chrX 84565869 84566179 -92407961 - AluY SINE Alu -1 310 1 767 217 22 54 chrX 84566179 84566294 -92407846 - MER45A DNA AcHobo -1472 109 1 267 342 75 0 chrX 84566994 84567114 -92407026 - L2 LINE L2 -4 3309 3181 692 234 67 54 chrX 84567538 84567873 -92406267 - MER39 LTR ERV1 -5 684 174 2334 85 0 7 chrX 84567902 84568196 -92405944 + AluSc SINE Alu 1 292 -17 1134 177 5 25 chrX 84568353 84568556 -92405584 - AluJo SINE Alu -103 209 11 372 318 0 0 chrX 84568595 84568702 -92405438 - MER34 LTR ERV1 -431 111 5 2308 87 0 35 chrX 84568757 84569067 -92405073 - AluSq SINE Alu -14 299 1 204 274 0 0 chrX 84571150 84571201 -92402939 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 2483 62 13 0 chrX 84572672 84572977 -92401163 + AluSp SINE Alu 1 309 -4 229 354 53 0 chrX 84573326 84573439 -92400701 - L2 LINE L2 -2 3311 3193 382 219 146 0 chrX 84573473 84573555 -92400585 + L2 LINE L2 3171 3264 -8 232 258 48 0 chrX 84573551 84573613 -92400527 - MIR3 SINE MIR -8 200 136 * 221 56 0 28 chrX 84573780 84573816 -92400324 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1230 193 167 31 chrX 84573977 84574289 -92399851 - MER39 LTR ERV1 -26 681 413 2167 84 35 0 chrX 84574289 84574576 -92399564 - AluSx SINE Alu -15 297 1 1230 193 167 31 chrX 84574576 84574825 -92399315 - MER39 LTR ERV1 -294 413 1 201 39 0 0 chrX 84575565 84575591 -92398549 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2069 107 4 14 chrX 84575860 84576141 -92397999 + AluSx SINE Alu 1 278 -34 237 33 0 0 chrX 84576141 84576171 -92397969 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2249 105 0 13 chrX 84576319 84576633 -92397507 + AluSg SINE Alu 1 310 0 2002 191 45 24 chrX 84576661 84577063 -92397077 - MER31B LTR ERV1 -4 657 48 2424 95 0 0 chrX 84577063 84577368 -92396772 + AluSq SINE Alu 1 305 -8 2002 191 45 24 chrX 84577368 84577418 -92396722 - MER31B LTR ERV1 -613 48 1 355 330 11 78 chrX 84577503 84577538 -92396602 - MIR SINE MIR -83 179 143 1748 107 91 23 chrX 84577538 84577857 -92396283 - AluSg SINE Alu 0 337 1 355 330 11 78 chrX 84577857 84578011 -92396129 - MIR SINE MIR -119 143 2 23 0 0 0 chrX 84578443 84578466 -92395674 + AT_rich Low_complexity Low_complexity 1 23 0 2114 127 0 0 chrX 84579495 84579814 -92394326 - AluSg SINE Alu 0 310 1 207 0 0 0 chrX 84580809 84580832 -92393308 + (A)n Simple_repeat Simple_repeat 1 23 0 2313 80 3 0 chrX 84581143 84581432 -92392708 + AluSx SINE Alu 1 290 -22 2584 43 0 7 chrX 84581439 84581743 -92392397 + AluY SINE Alu 1 302 -9 1357 92 0 223 chrX 84581869 84582196 -92391944 + AluSx SINE Alu 47 300 -12 2124 113 3 3 chrX 84582681 84582981 -92391159 - AluSx SINE Alu -12 300 1 640 362 33 33 chrX 84583018 84583322 -92390818 - L2 LINE L2 0 3272 2969 192 152 0 0 chrX 84584046 84584079 -92390061 + (TG)n Simple_repeat Simple_repeat 1 33 0 929 152 0 0 chrX 84584426 84584558 -92389582 - FLAM_C SINE Alu -1 132 1 193 296 0 0 chrX 84584648 84584692 -92389448 + MIR3 SINE MIR 144 187 -21 828 279 46 100 chrX 84584844 84585343 -92388797 - L2 LINE L2 0 3313 2842 1264 252 40 40 chrX 84585421 84585842 -92388298 - L2 LINE L2 -904 2410 1990 215 268 0 0 chrX 84586313 84586354 -92387786 - L2 LINE L2 -22 3250 3210 2302 84 0 0 chrX 84586408 84586738 -92387402 - AluSx SINE Alu 0 330 1 1282 166 0 5 chrX 84586752 84586990 -92387150 - AluJb SINE Alu 0 321 85 210 37 0 0 chrX 84587278 84587305 -92386835 + (CA)n Simple_repeat Simple_repeat 2 28 0 2257 103 7 0 chrX 84587555 84587856 -92386284 + AluSg1 SINE Alu 1 303 -6 767 324 96 22 chrX 84588184 84588653 -92385487 - L2 LINE L2 -35 3278 2776 251 311 95 0 chrX 84589028 84589102 -92385038 - L2 LINE L2 -38 3234 3154 201 250 139 28 chrX 84591444 84591516 -92382624 + MIR SINE MIR 61 140 -68 2417 90 0 0 chrX 84591696 84592006 -92382134 - AluSg SINE Alu 0 310 1 241 278 74 19 chrX 84592007 84592115 -92382025 - L2 LINE L2 -43 3229 3116 232 263 26 0 chrX 84592308 84592384 -92381756 - MIR SINE MIR -5 257 180 2359 92 0 31 chrX 84592597 84592777 -92381363 - AluSp SINE Alu -6 307 123 180 0 0 0 chrX 84592777 84592797 -92381343 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2144 109 7 0 chrX 84592797 84593080 -92381060 - AluSp SINE Alu -28 285 1 2359 92 0 31 chrX 84593080 84593215 -92380925 - AluSp SINE Alu -188 125 1 686 209 51 6 chrX 84593216 84593374 -92380766 - MIR SINE MIR -96 166 2 796 269 115 19 chrX 84593422 84593682 -92380458 - L3 LINE CR1 -61 1516 1232 278 304 94 43 chrX 84593985 84594123 -92380017 + L2 LINE L2 3126 3270 -2 348 200 0 0 chrX 84594665 84594740 -92379400 + (CA)n Simple_repeat Simple_repeat 1 75 0 2399 78 7 0 chrX 84594853 84595148 -92378992 - AluSq SINE Alu -16 297 1 2323 106 3 0 chrX 84595725 84596037 -92378103 + AluSp SINE Alu 1 313 0 432 0 0 0 chrX 84596858 84596906 -92377234 + (TG)n Simple_repeat Simple_repeat 2 49 0 2425 83 0 0 chrX 84597079 84597380 -92376760 + AluSg SINE Alu 1 301 -9 953 52 0 0 chrX 84597496 84597612 -92376528 - SVA Other Other -3 1383 1268 2616 76 3 0 chrX 84597612 84597941 -92376199 - LTR5 LTR ERVK -639 330 1 6236 140 19 21 chrX 84597941 84599232 -92374908 - SVA Other Other -518 936 14 30 27 0 0 chrX 84599237 84599274 -92374866 + AT_rich Low_complexity Low_complexity 1 37 0 358 294 0 0 chrX 84599522 84599614 -92374526 - MER117 DNA MER1_type -98 99 8 2205 112 0 10 chrX 84599978 84600292 -92373848 + AluSx SINE Alu 1 311 -1 209 264 70 85 chrX 84600346 84600475 -92373665 - L2 LINE L2 -188 3084 2958 2109 87 0 0 chrX 84600797 84601063 -92373077 - AluSc SINE Alu -39 270 5 2938 142 66 4 chrX 84601090 84601617 -92372523 - L1MC2 LINE L1 -1 6343 5784 403 331 16 0 chrX 84601845 84601966 -92372174 + MIR3 SINE MIR 76 198 -10 304 373 8 0 chrX 84601960 84602086 -92372054 - MIR3 SINE MIR -44 164 38 * 1863 104 22 22 chrX 84602220 84602490 -92371650 - AluSx SINE Alu -5 307 38 2099 71 25 14 chrX 84603116 84603423 -92370717 + AluY SINE Alu 1 310 0 2453 68 0 0 chrX 84604385 84604680 -92369460 + AluY SINE Alu 1 295 -16 2066 84 0 57 chrX 84605206 84605531 -92368609 - AluSg SINE Alu 0 308 1 196 304 0 24 chrX 84605991 84606067 -92368073 - MIR SINE MIR -83 125 53 204 125 0 0 chrX 84606206 84606238 -92367902 + (ATG)n Simple_repeat Simple_repeat 1 32 0 258 264 14 14 chrX 84606273 84606345 -92367795 - MIR SINE MIR -135 127 56 2425 88 3 0 chrX 84606584 84606891 -92367249 + AluSp SINE Alu 2 309 -4 2349 103 3 0 chrX 84607251 84607553 -92366587 + AluSp SINE Alu 1 303 -10 290 316 154 0 chrX 84607731 84607848 -92366292 + L2 LINE L2 3137 3271 -1 1146 53 0 0 chrX 84608180 84608311 -92365829 + AluSg SINE Alu 1 131 -179 2314 99 0 3 chrX 84608525 84608819 -92365321 - AluSx SINE Alu -19 293 1 2292 85 0 33 chrX 84608964 84609271 -92364869 - AluSg SINE Alu -13 297 1 1223 165 19 0 chrX 84610035 84610241 -92363899 + AluSg/x SINE Alu 85 294 -16 183 129 0 0 chrX 84610646 84610677 -92363463 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1666 97 18 0 chrX 84610677 84610903 -92363237 + AluSg/x SINE Alu 81 310 -2 186 392 39 35 chrX 84611091 84611346 -92362794 - L2 LINE L2 -2063 1251 996 2326 98 3 0 chrX 84611384 84611680 -92362460 + AluSg SINE Alu 1 297 -13 493 211 38 53 chrX 84612437 84612570 -92361570 - MER5B DNA MER1_type 0 178 48 1832 145 47 3 chrX 84612638 84612934 -92361206 - AluSx SINE Alu -3 309 1 207 0 0 0 chrX 84612997 84613020 -92361120 + (TA)n Simple_repeat Simple_repeat 2 24 0 851 198 10 83 chrX 84613370 84613562 -92360578 - MER45A DNA AcHobo 0 178 1 1746 114 29 58 chrX 84613720 84614028 -92360112 + AluSx SINE Alu 1 299 -13 2119 93 3 42 chrX 84614028 84614339 -92359801 + AluSq SINE Alu 1 300 -13 2124 98 3 17 chrX 84614462 84614759 -92359381 - AluSx SINE Alu -18 294 2 403 273 98 43 chrX 84614762 84614970 -92359170 - MIR SINE MIR -49 213 1 489 51 0 0 chrX 84614995 84615054 -92359086 - AluJo SINE Alu -12 298 240 984 152 0 30 chrX 84615054 84615218 -92358922 - AluJo SINE Alu -115 197 39 1424 65 0 0 chrX 84615471 84615641 -92358499 - AluSc SINE Alu -13 296 127 2396 87 0 6 chrX 84616162 84616473 -92357667 - AluSc SINE Alu 0 309 1 359 319 0 0 chrX 84617233 84617327 -92356813 - MIR3 SINE MIR -19 189 96 725 294 6 4 chrX 84618437 84618632 -92355508 - MIR SINE MIR -62 146 2 2177 134 0 0 chrX 84618649 84618954 -92355186 - AluSq SINE Alu -8 305 1 268 365 109 0 chrX 84618960 84619097 -92355043 + L2 LINE L2 2521 2672 -642 21 36 0 0 chrX 84619329 84619357 -92354783 + AT_rich Low_complexity Low_complexity 1 28 0 2486 70 3 0 chrX 84619699 84619999 -92354141 - AluSp SINE Alu -12 301 1 315 0 0 0 chrX 84619999 84620034 -92354106 + (T)n Simple_repeat Simple_repeat 1 35 0 289 246 0 31 chrX 84620047 84620112 -92354028 - tRNA-Ile-ATT tRNA tRNA -3 74 12 188 320 124 0 chrX 84620772 84620869 -92353271 + MIR SINE MIR 86 194 -68 2325 81 0 13 chrX 84621533 84621840 -92352300 - AluY SINE Alu -8 303 1 258 236 47 78 chrX 84622447 84622565 -92351575 - MIR SINE MIR -61 147 20 26 50 0 0 chrX 84623517 84623557 -92350583 + AT_rich Low_complexity Low_complexity 1 40 0 2772 32 0 0 chrX 84623573 84623884 -92350256 + AluY SINE Alu 1 311 0 862 176 106 6 chrX 84623929 84624099 -92350041 + AluSg/x SINE Alu 120 306 -4 2495 83 0 0 chrX 84624855 84625156 -92348984 + AluSc SINE Alu 1 301 -8 2162 117 0 7 chrX 84625169 84625467 -92348673 + AluSq SINE Alu 1 296 -17 189 0 0 0 chrX 84625471 84625492 -92348648 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2120 105 3 14 chrX 84625621 84625916 -92348224 + AluSx SINE Alu 1 292 -20 193 49 0 73 chrX 84626041 84626082 -92348058 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 616 235 39 0 chrX 84626590 84626743 -92347397 + MER103 DNA DNA 4 162 -4 2151 119 0 0 chrX 84628133 84628419 -92345721 + AluSq SINE Alu 1 311 0 186 0 40 0 chrX 84628419 84628444 -92345696 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2370 98 0 13 chrX 84628460 84628776 -92345364 + AluSx SINE Alu 1 312 0 2509 87 3 0 chrX 84630549 84630861 -92343279 + AluSp SINE Alu 1 313 0 1342 103 13 67 chrX 84631422 84631537 -92342603 + AluSx SINE Alu 1 100 -212 1840 58 0 5 chrX 84631537 84631761 -92342379 - AluY SINE Alu -6 305 83 1342 103 13 67 chrX 84631761 84631869 -92342271 + AluSx SINE Alu 100 212 -100 332 88 0 0 chrX 84631969 84632026 -92342114 + AluSp/q SINE Alu 247 303 0 2320 92 7 7 chrX 84632083 84632388 -92341752 - AluSx SINE Alu -7 305 1 1220 245 80 80 chrX 84633208 84633719 -92340421 - L2 LINE L2 0 3313 2795 2240 97 3 10 chrX 84633719 84634027 -92340113 + AluSx SINE Alu 6 311 -1 1220 245 80 80 chrX 84634027 84634289 -92339851 - L2 LINE L2 -518 2795 2535 4517 102 31 22 chrX 84634291 84634815 -92339325 - LTR8 LTR ERV1 0 691 158 2109 84 7 33 chrX 84634815 84635114 -92339026 - AluY SINE Alu -20 291 1 4517 102 31 22 chrX 84635114 84635274 -92338866 - LTR8 LTR ERV1 -533 158 1 251 196 0 0 chrX 84635279 84635330 -92338810 + MER116 DNA Mariner 3 53 -27 2160 106 23 0 chrX 84635333 84635635 -92338505 - AluSq SINE Alu -3 310 2 424 277 14 28 chrX 84635669 84635810 -92338330 - L2 LINE L2 -781 2533 2395 2349 78 0 23 chrX 84635884 84636193 -92337947 + AluY SINE Alu 1 302 -9 2192 99 0 7 chrX 84636635 84636928 -92337212 - AluSx SINE Alu -21 291 1 1867 158 0 14 chrX 84637115 84637407 -92336733 + AluJb SINE Alu 1 288 -24 671 265 29 0 chrX 84638146 84638316 -92335824 + FAM SINE Alu 1 175 0 2120 87 0 52 chrX 84639448 84639757 -92334383 + AluSg SINE Alu 1 293 -17 1218 168 131 7 chrX 84640924 84641221 -92332919 - L1MA6 LINE L1 -2 6298 5965 2361 86 0 0 chrX 84641224 84641525 -92332615 - AluSg SINE Alu -9 301 1 2337 93 26 0 chrX 84641571 84641873 -92332267 - AluSq SINE Alu -3 310 1 2381 68 7 0 chrX 84642480 84642774 -92331366 - AluY SINE Alu -15 296 1 230 306 16 0 chrX 84642807 84642869 -92331271 + L2 LINE L2 3210 3272 0 56 34 0 11 chrX 84642881 84642906 -92331234 + AT_rich Low_complexity Low_complexity 1 25 -62 2213 113 0 0 chrX 84642906 84643198 -92330942 + AluSx SINE Alu 1 292 -20 56 34 0 11 chrX 84643198 84643260 -92330880 + AT_rich Low_complexity Low_complexity 25 87 0 343 273 0 34 chrX 84643413 84643501 -92330639 + MER81 DNA DNA 29 113 -1 2177 114 0 3 chrX 84643520 84643827 -92330313 + AluSx SINE Alu 1 306 -6 21 71 0 0 chrX 84644494 84644536 -92329604 + AT_rich Low_complexity Low_complexity 1 42 0 1187 217 81 12 chrX 84645215 84645537 -92328603 - MER2 DNA MER2_type 0 344 1 2273 112 3 0 chrX 84645772 84646077 -92328063 + AluSq SINE Alu 1 306 -7 2655 39 0 0 chrX 84647129 84647434 -92326706 + AluY SINE Alu 1 305 -6 2486 69 3 0 chrX 84647441 84647745 -92326395 + AluSp SINE Alu 1 305 -8 2288 92 3 13 chrX 84648613 84648919 -92325221 - AluSx SINE Alu -9 303 1 2351 57 0 0 chrX 84649363 84649696 -92324444 - AluY SINE Alu 0 333 1 2362 91 0 3 chrX 84650910 84651218 -92322922 - AluSx SINE Alu -5 307 1 2170 109 6 22 chrX 84651246 84651559 -92322581 - AluSx SINE Alu -4 308 1 1163 73 0 0 chrX 84651559 84651695 -92322445 - AluSq/x SINE Alu -177 136 1 1998 131 7 0 chrX 84651972 84652284 -92321856 + AluSx SINE Alu 1 314 0 28 0 0 0 chrX 84652542 84652570 -92321570 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chrX 84653711 84653757 -92320383 + (CA)n Simple_repeat Simple_repeat 2 47 0 393 58 0 0 chrX 84653900 84653952 -92320188 + (TG)n Simple_repeat Simple_repeat 2 53 0 2802 132 40 22 chrX 84653991 84654324 -92319816 - L1MB1 LINE L1 -2 6166 5819 2379 114 0 0 chrX 84654324 84654632 -92319508 - AluSx SINE Alu -4 308 1 2802 132 40 22 chrX 84654632 84654804 -92319336 - L1MB1 LINE L1 -349 5819 5652 227 284 15 0 chrX 84656025 84656092 -92318048 - MIR3 SINE MIR -3 205 138 304 358 94 44 chrX 84657118 84657388 -92316752 + L2 LINE L2 2282 2584 -730 2390 81 0 0 chrX 84657388 84657684 -92316456 - AluSx SINE Alu -16 296 1 304 358 94 44 chrX 84657684 84657849 -92316291 + L2 LINE L2 2584 2739 -575 2640 33 0 3 chrX 84658000 84658305 -92315835 + AluY SINE Alu 1 304 -7 223 367 86 16 chrX 84658323 84658451 -92315689 + L2 LINE L2 2931 3067 -205 183 42 0 0 chrX 84658492 84658516 -92315624 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2266 108 0 0 chrX 84658523 84658830 -92315310 + AluSg SINE Alu 4 310 0 569 298 42 46 chrX 84658834 84659072 -92315068 + MIR SINE MIR 20 256 -6 200 259 0 35 chrX 84659093 84659151 -92314989 + L2 LINE L2 3172 3227 -86 249 326 98 27 chrX 84659661 84659845 -92314295 + L2 LINE L2 2709 2905 -409 2525 54 0 16 chrX 84660053 84660368 -92313772 - AluY SINE Alu -1 310 1 474 252 33 33 chrX 84660405 84660556 -92313584 + L2 LINE L2 3163 3313 0 207 139 0 0 chrX 84660932 84660968 -92313172 + (T)n Simple_repeat Simple_repeat 1 36 0 2103 108 64 22 chrX 84661115 84661475 -92312665 + THE1C LTR MaLR 1 375 0 2221 114 7 0 chrX 84661693 84661991 -92312149 - AluSx SINE Alu -12 300 1 22 0 0 0 chrX 84662168 84662190 -92311950 + AT_rich Low_complexity Low_complexity 1 22 0 1925 159 7 13 chrX 84663050 84663359 -92310781 + AluSx SINE Alu 1 307 -5 2121 120 10 0 chrX 84664469 84664768 -92309372 - AluSx SINE Alu -6 306 5 189 0 0 0 chrX 84664806 84664827 -92309313 + (T)n Simple_repeat Simple_repeat 1 21 0 1931 201 0 0 chrX 84664866 84665180 -92308960 + 7SLRNA srpRNA srpRNA 2 315 -5 2235 166 49 66 chrX 84665265 84665794 -92308346 - MLT2B1 LTR ERVL 0 520 1 378 250 48 3 chrX 84666178 84666349 -92307791 + MIR SINE MIR 1 230 -32 931 258 114 58 chrX 84666428 84666950 -92307190 - L2 LINE L2 -32 3281 2733 800 238 150 48 chrX 84666952 84667208 -92306932 - L2 LINE L2 -952 2362 2134 2436 82 0 22 chrX 84667208 84667525 -92306615 + AluSx SINE Alu 3 312 0 800 238 150 48 chrX 84667525 84667689 -92306451 - L2 LINE L2 -1180 2134 1899 1094 156 0 0 chrX 84668082 84668236 -92305904 + FRAM SINE Alu 1 153 -23 27 49 0 0 chrX 84668236 84668277 -92305863 + AT_rich Low_complexity Low_complexity 1 41 0 318 248 161 0 chrX 84669647 84669784 -92304356 + L1ME4a LINE L1 5961 6119 -2 549 171 152 13 chrX 84669973 84670108 -92304032 + MER5A DNA MER1_type 4 159 -30 281 162 61 20 chrX 84670162 84670261 -92303879 + CT-rich Low_complexity Low_complexity 5 107 0 1406 228 57 47 chrX 84670293 84670807 -92303333 - MER39 LTR ERV1 -7 681 1 2249 116 0 7 chrX 84670905 84671208 -92302932 - AluSg SINE Alu -9 301 1 1134 140 37 7 chrX 84671477 84671816 -92302324 + MLT1B LTR MaLR 1 390 0 309 307 23 0 chrX 84672813 84672901 -92301239 - L1MC4 LINE L1 -1339 6703 6614 2399 76 0 7 chrX 84672902 84673193 -92300947 - AluSx SINE Alu -8 304 16 1984 56 0 0 chrX 84673847 84674079 -92300061 + AluSq SINE Alu 1 232 -81 211 139 0 23 chrX 84674106 84674149 -92299991 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 475 268 14 56 chrX 84674416 84674558 -92299582 + MIR3 SINE MIR 44 179 -29 294 287 0 11 chrX 84674945 84675032 -92299108 + MIR SINE MIR 68 153 -109 223 263 0 132 chrX 84675287 84675353 -92298787 - L2 LINE L2 -189 3083 3010 2242 37 45 0 chrX 84675353 84675621 -92298519 + AluY SINE Alu 1 280 -31 1432 37 0 0 chrX 84675458 84675621 -92298519 + AluY SINE Alu 118 304 0 184 42 0 0 chrX 84675621 84675645 -92298495 + (CAAAA)n Simple_repeat Simple_repeat 1 70 0 223 263 0 132 chrX 84675645 84675691 -92298449 - L2 LINE L2 -260 3012 2985 2456 78 0 3 chrX 84676407 84676716 -92297424 + AluY SINE Alu 1 308 -3 781 231 0 11 chrX 84676789 84676975 -92297165 + L1PB4 LINE L1 5969 6152 -4 1753 177 7 3 chrX 84677652 84677935 -92296205 - AluJo SINE Alu -28 284 1 372 316 16 77 chrX 84677948 84678195 -92295945 + L2 LINE L2 2542 2773 -541 2325 86 0 3 chrX 84678202 84678493 -92295647 - AluSx SINE Alu -22 290 1 295 189 0 19 chrX 84679704 84679757 -92294383 - L2 LINE L2 -50 3263 3212 23 78 0 0 chrX 84680667 84680718 -92293422 + AT_rich Low_complexity Low_complexity 1 51 0 194 363 99 6 chrX 84681261 84681432 -92292708 + L2 LINE L2 2959 3145 -127 262 227 31 93 chrX 84681533 84681630 -92292510 - L2 LINE L2 -74 3239 3149 1204 190 14 0 chrX 84682073 84682289 -92291851 + MER20 DNA MER1_type 1 219 0 26 0 0 0 chrX 84682310 84682336 -92291804 + AT_rich Low_complexity Low_complexity 1 26 0 428 274 50 6 chrX 84682519 84682698 -92291442 - L1ME4a LINE L1 -4 6117 5931 186 43 0 0 chrX 84683264 84683287 -92290853 + (TG)n Simple_repeat Simple_repeat 2 24 0 2401 85 3 0 chrX 84683390 84683695 -92290445 - AluSg SINE Alu -4 306 1 23 33 0 0 chrX 84683970 84684000 -92290140 + AT_rich Low_complexity Low_complexity 1 30 0 2143 101 0 39 chrX 84684153 84684460 -92289680 + AluSg SINE Alu 3 297 -13 1693 155 7 71 chrX 84684701 84685011 -92289129 - AluJo SINE Alu -22 290 1 1305 230 92 40 chrX 84685322 84685748 -92288392 - MLT1L LTR MaLR -8 607 160 2385 82 0 7 chrX 84685778 84686083 -92288057 + AluSx SINE Alu 1 303 -9 488 177 42 126 chrX 84686415 84686630 -92287510 - L2 LINE L2 0 3313 3117 2258 110 0 28 chrX 84687194 84687512 -92286628 + AluSx SINE Alu 1 309 -3 208 319 66 105 chrX 84688685 84689246 -92284894 + L2 LINE L2 2220 2758 -556 186 133 0 0 chrX 84689482 84689512 -92284628 + (T)n Simple_repeat Simple_repeat 1 30 0 1881 139 51 0 chrX 84689514 84689808 -92284332 - AluSx SINE Alu -1 311 3 240 434 81 0 chrX 84689850 84689986 -92284154 + L2 LINE L2 3119 3265 -7 2375 75 0 26 chrX 84691522 84691830 -92282310 - AluSq SINE Alu -13 300 1 225 232 29 0 chrX 84692239 84692308 -92281832 - MER69 DNA AcHobo 0 2526 2456 475 176 185 0 chrX 84692328 84692447 -92281693 - MER69 DNA AcHobo -2385 141 1 181 293 17 0 chrX 84692588 84692646 -92281494 - L2 LINE L2 -1 3312 3254 1412 165 19 15 chrX 84693987 84694254 -92279886 - L1PA12 LINE L1 -7307 274 7 292 114 0 0 chrX 84694266 84694310 -92279830 - Alu SINE Alu -13 289 246 278 226 40 73 chrX 84694323 84694500 -92279640 - L1 LINE L1 -2123 4023 3853 1493 152 62 70 chrX 84694515 84694884 -92279256 - LTR10A LTR ERV1 -63 546 181 241 251 145 63 chrX 84694886 84695093 -92279047 - LTR10A LTR ERV1 -374 235 12 4687 173 35 5 chrX 84695124 84696101 -92278039 - Tigger3b DNA MER2_type 0 1231 226 403 220 9 28 chrX 84697342 84697451 -92276689 - MIR SINE MIR 0 262 156 1852 141 32 18 chrX 84697451 84697791 -92276349 - Tigger3b DNA MER2_type 0 1231 887 2900 154 32 9 chrX 84697794 84698321 -92275819 - Tigger3b DNA MER2_type -691 540 2 229 315 35 49 chrX 84698323 84698466 -92275674 - MIR SINE MIR -121 141 1 23 54 0 0 chrX 84698655 84698692 -92275448 + AT_rich Low_complexity Low_complexity 1 37 0 2309 101 0 0 chrX 84699017 84699314 -92274826 + AluSx SINE Alu 1 297 -15 1340 166 25 116 chrX 84699316 84699636 -92274504 + AluJo SINE Alu 1 291 -21 787 289 25 33 chrX 84700311 84700553 -92273587 - MIR SINE MIR 0 262 23 204 40 0 0 chrX 84700696 84700721 -92273419 + (TGG)n Simple_repeat Simple_repeat 1 25 0 205 290 58 0 chrX 84701728 84701797 -92272343 - MIR SINE MIR -133 129 57 22 56 0 0 chrX 84702989 84703025 -92271115 + AT_rich Low_complexity Low_complexity 1 36 0 361 111 14 14 chrX 84703148 84703220 -92270920 + LTR26 LTR ERV1 1 72 -531 1026 151 0 0 chrX 84703220 84703399 -92270741 + AluSg/x SINE Alu 135 313 0 2037 150 13 0 chrX 84703401 84703708 -92270432 + AluJb SINE Alu 1 311 -1 1060 91 15 86 chrX 84703711 84703909 -92270231 + LTR26 LTR ERV1 43 226 -377 475 62 49 0 chrX 84704011 84704092 -92270048 + L1PA4 LINE L1 6066 6150 -5 6193 92 15 31 chrX 84704113 84705182 -92268958 + L1PA11 LINE L1 5120 6174 0 588 96 0 12 chrX 84705429 84705512 -92268628 - AluSg SINE Alu -227 83 2 837 215 56 0 chrX 84705515 84705710 -92268430 - MIR SINE MIR -56 206 1 1066 197 45 0 chrX 84705727 84705950 -92268190 - MIR SINE MIR 0 262 30 2449 90 0 0 chrX 84706370 84706671 -92267469 + AluSg SINE Alu 1 301 -9 872 90 82 0 chrX 84706779 84706913 -92267227 - L1PA7 LINE L1 0 6154 6010 553 156 0 0 chrX 84707037 84707133 -92267007 - AluSg/x SINE Alu -2 308 213 309 366 30 0 chrX 84707138 84707269 -92266871 - L2 LINE L2 -613 2701 2567 1261 278 23 43 chrX 84707291 84707828 -92266312 - MLT2D LTR ERVL 0 520 3 278 358 75 0 chrX 84707985 84708105 -92266035 - L2 LINE L2 -962 2352 2224 1108 223 120 29 chrX 84708131 84708440 -92265700 - MLT1C LTR MaLR 0 467 131 961 201 0 0 chrX 84708440 84708604 -92265536 - FRAM SINE Alu -13 163 1 1905 184 44 16 chrX 84708722 84709218 -92264922 - Charlie1b DNA MER1_type 0 523 14 2463 73 0 0 chrX 84709274 84709574 -92264566 + AluSg1 SINE Alu 1 300 -9 472 62 15 0 chrX 84709682 84709747 -92264393 - MSTA LTR MaLR -362 66 1 235 369 0 0 chrX 84709832 84709916 -92264224 - L2 LINE L2 -50 3263 3180 214 190 38 63 chrX 84710107 84710265 -92263875 + (TTATA)n Simple_repeat Simple_repeat 1 154 0 524 42 14 0 chrX 84710269 84710340 -92263800 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 347 74 0 chrX 84710910 84711005 -92263135 - MIR SINE MIR -9 253 152 751 121 18 174 chrX 84711566 84711790 -92262350 + MER53 DNA DNA 1 189 0 496 298 78 45 chrX 84711804 84712049 -92262091 + MIR SINE MIR 10 262 0 255 194 32 0 chrX 84712428 84712490 -92261650 - L1MB7 LINE L1 -16 6168 6105 834 90 0 0 chrX 84712490 84712601 -92261539 + AluSq/x SINE Alu 1 111 -202 786 152 41 0 chrX 84712602 84712747 -92261393 + MER20 DNA MER1_type 69 219 0 211 200 0 0 chrX 84713470 84713510 -92260630 + (CACCAT)n Simple_repeat Simple_repeat 5 44 0 347 281 67 18 chrX 84713513 84713677 -92260463 - MIR SINE MIR -7 255 84 1915 144 3 0 chrX 84714766 84715085 -92259055 + AluSx SINE Alu 1 320 0 2341 87 3 0 chrX 84715413 84715713 -92258427 - AluSx SINE Alu -11 301 1 255 331 24 16 chrX 84715722 84715846 -92258294 + L2 LINE L2 1838 1962 -1352 1259 137 0 5 chrX 84715860 84716057 -92258083 - L1PB4 LINE L1 -7 6149 5954 244 139 0 0 chrX 84716058 84716101 -92258039 - L1PB4 LINE L1 -165 5991 5949 186 306 62 104 chrX 84716105 84716227 -92257913 + L2 LINE L2 1959 2085 -1229 2458 85 0 3 chrX 84716227 84716534 -92257606 - AluSq SINE Alu -7 306 1 186 306 62 104 chrX 84716534 84716582 -92257558 + L2 LINE L2 2085 2133 -1181 396 356 6 11 chrX 84716582 84716759 -92257381 - MER5B DNA MER1_type -2 176 1 186 306 62 104 chrX 84716759 84716875 -92257265 + L2 LINE L2 2133 2234 -1080 1737 155 0 61 chrX 84717088 84717246 -92256894 - AluJo SINE Alu -21 291 160 2460 70 10 0 chrX 84717246 84717547 -92256593 - AluSg SINE Alu -2 308 5 1737 155 0 61 chrX 84717547 84717698 -92256442 - AluJo SINE Alu -152 160 1 1836 161 0 35 chrX 84718172 84718488 -92255652 + AluJb SINE Alu 6 310 -2 491 319 67 69 chrX 84718519 84718707 -92255433 + L2 LINE L2 1855 2042 -1272 661 171 120 0 chrX 84718707 84718824 -92255316 - FLAM_A SINE Alu -2 131 1 491 319 67 69 chrX 84718824 84719040 -92255100 + L2 LINE L2 2042 2258 -1056 306 0 0 0 chrX 84719048 84719082 -92255058 + (TG)n Simple_repeat Simple_repeat 2 35 0 452 331 148 32 chrX 84719108 84719480 -92254660 + L2 LINE L2 2855 3269 -3 2456 71 7 0 chrX 84720739 84721048 -92253092 + AluY SINE Alu 1 311 0 254 240 0 80 chrX 84721510 84721585 -92252555 + L2 LINE L2 3200 3268 -4 390 169 0 0 chrX 84722061 84722138 -92252002 + L1 LINE L1 4780 4856 -1290 2269 128 12 2 chrX 84722144 84722547 -92251593 + L1P4 LINE L1 5221 5627 -541 602 277 23 17 chrX 84722835 84723012 -92251128 + MER5B DNA MER1_type 1 178 0 8393 68 8 1 chrX 84723202 84724374 -92249766 - L1P LINE L1 -768 5378 4198 4578 158 6 12 chrX 84724474 84725369 -92248771 - Harlequin LTR ERV1 -618 6031 3375 930 213 31 1 chrX 84725412 84725658 -92248482 - Harlequin LTR ERV1 -1924 4725 2767 653 313 79 0 chrX 84727756 84727970 -92246170 + MIR SINE MIR 31 261 -1 1775 67 0 0 chrX 84729248 84729458 -92244682 + AluSq SINE Alu 1 210 -103 317 130 0 0 chrX 84729459 84729513 -92244627 + AluSq SINE Alu 247 300 -1 198 184 0 0 chrX 84729575 84729613 -92244527 - L2 LINE L2 -5 3308 3271 2263 83 3 20 chrX 84731600 84731902 -92242238 - AluSg1 SINE Alu -12 297 1 2273 128 58 0 chrX 84733242 84733640 -92240500 - L1MA9 LINE L1 0 6312 5892 737 173 8 8 chrX 84733755 84733888 -92240252 - FLAM_A SINE Alu 0 133 1 849 191 0 19 chrX 84734459 84734616 -92239524 + MER5A DNA MER1_type 32 185 -4 270 0 0 0 chrX 84735066 84735096 -92239044 + (TG)n Simple_repeat Simple_repeat 2 31 0 1065 162 0 0 chrX 84735812 84735979 -92238161 - MER45A DNA AcHobo -4 174 8 2346 87 3 3 chrX 84736712 84737010 -92237130 - AluSp SINE Alu -15 298 1 356 203 13 0 chrX 84738591 84738670 -92235470 + MER116 DNA Mariner 1 80 0 25 75 0 0 chrX 84739822 84739875 -92234265 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chrX 84741431 84741460 -92232680 + AT_rich Low_complexity Low_complexity 1 29 0 36100 82 9 11 chrX 84742270 84747236 -92226904 + L1PA6 LINE L1 11 4959 -1195 2341 86 0 13 chrX 84747236 84747537 -92226603 + AluY SINE Alu 3 299 -12 36100 82 9 11 chrX 84747537 84748731 -92225409 + L1PA6 LINE L1 4959 6154 0 381 43 0 0 chrX 84750234 84750281 -92223859 + (CA)n Simple_repeat Simple_repeat 1 47 0 1784 122 0 4 chrX 84750313 84750567 -92223573 + AluSx SINE Alu 57 309 -3 714 196 32 32 chrX 84750606 84750795 -92223345 - Tigger7 DNA MER2_type 0 2491 2303 * 998 225 177 4 chrX 84750792 84751063 -92223077 - Tigger7 DNA MER2_type -2169 318 1 659 215 0 23 chrX 84751959 84752089 -92222051 - FLAM_A SINE Alu -6 127 1 1034 211 67 7 chrX 84752129 84752430 -92221710 - MER58B DNA MER1_type 0 341 11 520 256 183 0 chrX 84752454 84752634 -92221506 + MIR SINE MIR 50 262 0 22 0 0 0 chrX 84752837 84752859 -92221281 + AT_rich Low_complexity Low_complexity 1 22 0 222 360 24 8 chrX 84754258 84754383 -92219757 - L3 LINE CR1 -864 713 587 182 396 25 25 chrX 84754619 84754778 -92219362 + L2 LINE L2 2717 2875 -439 689 226 100 0 chrX 84754877 84755067 -92219073 + L1ME2 LINE L1 5937 6145 -19 2193 195 25 57 chrX 84755698 84756225 -92217915 - LTR40a LTR ERVL -2 517 8 959 186 25 51 chrX 84757168 84757404 -92216736 + MER106A DNA MER1_type 7 236 0 2003 132 0 33 chrX 84757486 84757790 -92216350 - AluJb SINE Alu -18 294 1 1295 124 120 22 chrX 84758126 84758362 -92215778 + L1MA8 LINE L1 5986 6197 -94 2115 117 0 20 chrX 84758362 84758662 -92215478 + AluSx SINE Alu 5 298 -14 1295 124 120 22 chrX 84758662 84758673 -92215467 + L1MA8 LINE L1 6197 6206 -85 279 79 0 0 chrX 84758673 84758711 -92215429 + (TG)n Simple_repeat Simple_repeat 2 39 0 1295 124 120 22 chrX 84758711 84758736 -92215404 + L1MA8 LINE L1 6206 6286 -5 307 336 8 8 chrX 84758823 84758951 -92215189 + L2 LINE L2 2209 2336 -978 2232 97 0 17 chrX 84759155 84759455 -92214685 - AluSx SINE Alu -17 295 1 622 214 168 30 chrX 84759558 84759760 -92214380 + MER33 DNA MER1_type 1 167 -2457 2349 81 0 3 chrX 84759760 84760056 -92214084 + AluSx SINE Alu 1 295 -17 622 214 168 30 chrX 84760056 84760126 -92214014 + MER33 DNA MER1_type 167 341 -22 191 200 73 18 chrX 84760333 84760388 -92213752 + MIR SINE MIR 152 209 -53 2090 125 0 25 chrX 84760534 84760853 -92213287 - AluSx SINE Alu -1 311 1 21 36 0 0 chrX 84761003 84761031 -92213109 + AT_rich Low_complexity Low_complexity 1 28 0 2373 72 3 20 chrX 84761114 84761418 -92212722 + AluSp SINE Alu 1 299 -14 25 31 0 0 chrX 84762857 84762889 -92211251 + AT_rich Low_complexity Low_complexity 1 32 0 1898 137 0 55 chrX 84765151 84765342 -92208798 - AluSx SINE Alu -2 310 143 2236 122 0 0 chrX 84765342 84765653 -92208487 - AluSx SINE Alu -1 311 1 1898 137 0 55 chrX 84765653 84765789 -92208351 - AluSx SINE Alu -169 143 1 24 0 0 0 chrX 84766065 84766089 -92208051 + AT_rich Low_complexity Low_complexity 1 24 0 1951 153 0 16 chrX 84766095 84766402 -92207738 + AluJb SINE Alu 1 302 -10 204 331 29 66 chrX 84766818 84766954 -92207186 - L2 LINE L2 -261 3011 2881 255 319 150 59 chrX 84767194 84767276 -92206864 - L2 LINE L2 -827 2487 2414 2305 97 0 10 chrX 84767276 84767576 -92206564 - AluSc SINE Alu -12 297 1 255 319 150 59 chrX 84767576 84768067 -92206073 - L2 LINE L2 -900 2414 1862 261 281 124 50 chrX 84768127 84768248 -92205892 - L2 LINE L2 -4 3268 3139 2456 71 7 0 chrX 84768662 84768971 -92205169 - AluY SINE Alu 0 311 1 452 331 148 32 chrX 84770230 84770602 -92203538 - L2 LINE L2 -3 3269 2855 306 0 0 0 chrX 84770628 84770662 -92203478 + (CA)n Simple_repeat Simple_repeat 2 35 0 491 319 67 69 chrX 84770670 84770886 -92203254 - L2 LINE L2 -1056 2258 2042 661 171 120 0 chrX 84770886 84771003 -92203137 + FLAM_A SINE Alu 1 131 -2 491 319 67 69 chrX 84771003 84771191 -92202949 - L2 LINE L2 -1272 2042 1855 1836 161 0 35 chrX 84771222 84771538 -92202602 - AluJb SINE Alu -2 310 6 1707 160 0 52 chrX 84772012 84772160 -92201980 + AluJo SINE Alu 1 126 -186 2235 71 27 0 chrX 84772160 84772456 -92201684 + AluSg SINE Alu 5 308 -2 1707 160 0 52 chrX 84772456 84772614 -92201526 + AluJo SINE Alu 126 291 -21 413 356 6 11 chrX 84772943 84773120 -92201020 + MER5B DNA MER1_type 1 176 -2 2475 87 0 0 chrX 84773168 84773478 -92200662 + AluSq SINE Alu 1 310 -3 257 139 0 0 chrX 84773604 84773647 -92200493 + L1PB4 LINE L1 5949 5991 -165 1240 142 0 5 chrX 84773648 84773845 -92200295 + L1PB4 LINE L1 5954 6149 -7 252 331 24 16 chrX 84773859 84773983 -92200157 - L2 LINE L2 -1352 1962 1838 1734 58 5 0 chrX 84773992 84774197 -92199943 + AluSp SINE Alu 1 206 -107 23 33 0 0 chrX 84774357 84774387 -92199753 + AT_rich Low_complexity Low_complexity 1 30 0 2397 78 7 0 chrX 84774394 84774701 -92199439 + AluSc SINE Alu 1 309 0 1424 188 7 65 chrX 84775751 84776059 -92198081 - AluJo SINE Alu -22 290 1 1878 116 0 98 chrX 84778269 84778606 -92195534 - AluY SINE Alu -7 304 1 314 301 98 30 chrX 84784077 84784210 -92189930 + L2 LINE L2 2708 2849 -465 232 220 0 0 chrX 84785654 84785704 -92188436 + L2 LINE L2 3264 3313 0 826 252 128 8 chrX 84785820 84786231 -92187909 - L1ME4a LINE L1 -4 6117 5658 22 0 0 0 chrX 84786384 84786406 -92187734 + AT_rich Low_complexity Low_complexity 1 22 0 229 224 194 0 chrX 84786492 84786559 -92187581 + MER116 DNA Mariner 1 80 0 393 273 50 0 chrX 84787202 84787363 -92186777 + L1ME4a LINE L1 5880 6048 -73 23 0 0 29 chrX 84787413 84787432 -92186708 + AT_rich Low_complexity Low_complexity 1 20 -13 2377 81 0 3 chrX 84787432 84787727 -92186413 + AluSc SINE Alu 1 294 -15 23 0 0 29 chrX 84787727 84787741 -92186399 + AT_rich Low_complexity Low_complexity 20 33 0 2559 24 3 3 chrX 84788964 84789260 -92184880 + AluY SINE Alu 1 296 -15 747 222 102 44 chrX 84789566 84789867 -92184273 - L1MC5 LINE L1 -50 7911 7582 2197 101 20 0 chrX 84789867 84790173 -92183967 - AluSx SINE Alu 0 312 1 747 222 102 44 chrX 84790173 84790254 -92183886 - L1MC5 LINE L1 -379 7582 7507 1985 230 116 29 chrX 84790286 84790541 -92183599 - MLT1F LTR MaLR -3 539 308 1370 166 213 0 chrX 84790541 84790842 -92183298 + MLT1A1 LTR MaLR 1 365 0 1985 230 116 29 chrX 84790842 84791078 -92183062 - MLT1F LTR MaLR -234 308 5 243 189 0 0 chrX 84791125 84791178 -92182962 + T-rich Low_complexity Low_complexity 1 53 0 537 191 0 0 chrX 84791178 84791262 -92182878 - AluJ/FLAM SINE Alu -228 84 1 828 206 127 79 chrX 84791267 84791738 -92182402 - L1MC5 LINE L1 -493 7468 6975 197 319 0 14 chrX 84791769 84791841 -92182299 + MER5B DNA MER1_type 86 156 -22 189 241 93 0 chrX 84791864 84791918 -92182222 - MER5A DNA MER1_type -68 121 63 819 224 55 23 chrX 84792120 84792339 -92181801 + MIR SINE MIR 3 228 -34 461 274 95 24 chrX 84792451 84792619 -92181521 - MIR SINE MIR -12 250 71 1263 194 23 35 chrX 84792650 84792870 -92181270 + MIR SINE MIR 8 226 -36 1359 140 214 11 chrX 84792870 84793155 -92180985 - MER61A LTR ERV1 0 343 1 1263 194 23 35 chrX 84793155 84793192 -92180948 + MIR SINE MIR 226 262 0 510 342 16 22 chrX 84793706 84793890 -92180250 + MIR3 SINE MIR 20 202 -6 2085 106 7 0 chrX 84796241 84796523 -92177617 - AluSx SINE Alu -3 309 26 588 221 2 21 chrX 84796549 84796697 -92177443 - MIR SINE MIR -61 201 60 256 318 47 12 chrX 84796688 84796773 -92177367 + MIR SINE MIR 37 124 -84 * 1766 74 12 62 chrX 84797041 84797299 -92176841 + AluY SINE Alu 1 245 -66 2311 97 6 0 chrX 84797694 84798005 -92176135 - AluSp SINE Alu 0 313 1 207 234 0 21 chrX 84798013 84798060 -92176080 - L2 LINE L2 -13 3300 3255 192 40 0 0 chrX 84798128 84798153 -92175987 + (CA)n Simple_repeat Simple_repeat 1 25 0 1633 175 55 6 chrX 84798184 84798509 -92175631 - MER2 DNA MER2_type 0 344 4 2226 120 3 0 chrX 84798543 84798844 -92175296 - AluSq SINE Alu -9 304 3 559 300 121 6 chrX 84798895 84799218 -92174922 + MARNA DNA Mariner 197 556 -30 205 259 52 17 chrX 84801212 84801270 -92172870 + L2 LINE L2 3203 3262 -10 225 232 18 18 chrX 84803052 84803108 -92171032 + (CATA)n Simple_repeat Simple_repeat 1 56 0 2487 70 6 3 chrX 84804268 84804580 -92169560 + AluSq SINE Alu 1 313 0 644 320 26 4 chrX 84804605 84804833 -92169307 - MIR SINE MIR -10 252 20 201 405 43 17 chrX 84805026 84805142 -92168998 - L3b LINE CR1 -27 1556 1438 510 333 59 0 chrX 84805554 84805707 -92168433 + L2 LINE L2 3111 3272 0 1426 187 79 29 chrX 84806126 84806171 -92167969 + MER58B DNA MER1_type 11 52 -2368 2130 97 0 23 chrX 84806171 84806185 -92167955 - AluSg SINE Alu -17 293 280 183 42 0 0 chrX 84806185 84806209 -92167931 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2130 97 0 23 chrX 84806209 84806493 -92167647 - AluSg SINE Alu -30 280 2 1426 187 79 29 chrX 84806493 84806538 -92167602 + MER58B DNA MER1_type 52 93 -2327 1983 124 14 0 chrX 84806538 84806821 -92167319 + AluSx SINE Alu 1 287 -25 1426 187 79 29 chrX 84806821 84807044 -92167096 + MER58B DNA MER1_type 93 341 0 2285 98 0 3 chrX 84807341 84807638 -92166502 + AluSx SINE Alu 1 296 -16 23 33 0 0 chrX 84809340 84809370 -92164770 + AT_rich Low_complexity Low_complexity 1 30 0 2230 62 65 10 chrX 84809536 84809828 -92164312 + AluSp SINE Alu 1 308 -5 456 19 0 0 chrX 84809843 84809896 -92164244 + (CA)n Simple_repeat Simple_repeat 2 54 0 2042 115 7 3 chrX 84809906 84810193 -92163947 + AluSx SINE Alu 1 288 -24 1932 96 74 0 chrX 84810201 84810471 -92163669 + AluSx SINE Alu 1 290 -22 239 196 0 0 chrX 84810485 84810536 -92163604 + L1MC4 LINE L1 6649 6699 -1343 543 234 39 8 chrX 84812438 84812566 -92161574 + MIR3 SINE MIR 74 205 -3 1895 214 33 7 chrX 84812889 84813343 -92160797 + MLT1C LTR MaLR 2 467 0 2035 194 44 16 chrX 84814061 84814514 -92159626 - MER31B LTR ERV1 0 466 1 22 35 0 0 chrX 84814854 84814883 -92159257 + AT_rich Low_complexity Low_complexity 1 29 0 244 362 0 0 chrX 84815442 84815536 -92158604 + GA-rich Low_complexity Low_complexity 1 94 0 373 255 57 96 chrX 84816844 84816875 -92157265 + MER5A DNA MER1_type 36 67 -122 439 136 0 0 chrX 84816875 84816956 -92157184 + L1MA7 LINE L1 6207 6287 -4 373 255 57 96 chrX 84816956 84817081 -92157059 + MER5A DNA MER1_type 67 186 -3 694 298 48 5 chrX 84817085 84817293 -92156847 + MIR SINE MIR 10 226 -36 2242 76 35 0 chrX 84817475 84817763 -92156377 + AluSc SINE Alu 1 298 -11 359 266 135 14 chrX 84818148 84818299 -92155841 + MIR SINE MIR 55 216 -46 13287 188 24 32 chrX 84819614 84820126 -92154014 - L1MB1 LINE L1 0 7587 7073 2217 97 0 10 chrX 84820126 84820434 -92153706 - AluSg SINE Alu -5 305 1 13287 188 24 32 chrX 84820434 84820832 -92153308 - L1MB1 LINE L1 -514 7073 6673 2201 113 3 0 chrX 84820832 84821153 -92152987 - AluSp SINE Alu 0 313 1 13287 188 24 32 chrX 84821153 84824266 -92149874 - L1MB1 LINE L1 -914 6673 3561 2135 92 45 3 chrX 84824266 84824558 -92149582 - AluSc SINE Alu -5 304 1 13287 188 24 32 chrX 84824558 84825017 -92149123 - L1MB1 LINE L1 -4026 3561 3100 1072 197 92 5 chrX 84825020 84825238 -92148902 + AluJb SINE Alu 1 237 -75 2314 101 0 0 chrX 84825892 84826188 -92147952 - AluSc SINE Alu -13 296 1 414 145 0 0 chrX 84826322 84826384 -92147756 - Tigger5 DNA MER2_type 0 2323 2262 420 195 31 12 chrX 84826384 84826510 -92147630 - Tigger5 DNA MER2_type -2130 193 13 332 320 88 67 chrX 84826769 84827345 -92146795 + L2 LINE L2 2686 3271 -1 2287 65 0 4 chrX 84827867 84828142 -92145998 - AluSq SINE Alu -39 274 1 358 380 32 63 chrX 84828194 84828636 -92145504 + L2 LINE L2 2817 3244 -28 1408 190 58 48 chrX 84828637 84829042 -92145098 + MLT1C LTR MaLR 1 467 0 800 263 67 5 chrX 84830559 84830783 -92143357 - MIR SINE MIR -23 239 2 247 237 21 0 chrX 84831347 84831440 -92142700 + (TA)n Simple_repeat Simple_repeat 1 95 0 259 233 60 13 chrX 84831463 84831603 -92142537 - MIR SINE MIR -4 258 34 210 143 0 0 chrX 84831695 84831730 -92142410 + (T)n Simple_repeat Simple_repeat 1 35 0 1477 168 180 9 chrX 84832286 84832619 -92141521 + MLT1B LTR MaLR 1 390 0 320 329 114 24 chrX 84833240 84833407 -92140733 - MIR3 SINE MIR -7 201 20 38 0 0 0 chrX 84833749 84833787 -92140353 + AT_rich Low_complexity Low_complexity 1 38 0 2151 107 0 17 chrX 84833787 84834087 -92140053 - AluSq SINE Alu -15 298 4 2311 102 0 0 chrX 84835016 84835321 -92138819 - AluSq SINE Alu -8 305 1 571 125 104 0 chrX 84835533 84835629 -92138511 - L1MC4 LINE L1 -473 7569 7464 * 1782 203 58 19 chrX 84835627 84836055 -92138085 + L1MC4 LINE L1 7595 8039 -3 617 316 24 6 chrX 84837497 84837665 -92136475 + MIR SINE MIR 28 198 -64 2206 116 0 0 chrX 84838549 84838842 -92135298 - AluSx SINE Alu -18 294 2 252 0 0 0 chrX 84839835 84839863 -92134277 + (TA)n Simple_repeat Simple_repeat 2 29 0 389 94 0 0 chrX 84840366 84840419 -92133721 + Alu SINE Alu 1 53 -247 2279 111 0 10 chrX 84841594 84841900 -92132240 + AluSx SINE Alu 4 306 -6 1088 248 111 13 chrX 84841956 84842414 -92131726 + MLT1H LTR MaLR 1 590 0 1340 229 114 54 chrX 84847119 84847212 -92126928 - MLT1F LTR MaLR -13 529 443 2580 40 7 0 chrX 84847212 84847512 -92126628 + AluY SINE Alu 1 302 -9 1340 229 114 54 chrX 84847512 84847917 -92126223 - MLT1F LTR MaLR -99 443 1 225 303 104 132 chrX 84848143 84848536 -92125604 + L2 LINE L2 2871 3252 -20 21 36 0 0 chrX 84848977 84849005 -92125135 + AT_rich Low_complexity Low_complexity 1 28 0 2332 96 6 6 chrX 84849646 84849958 -92124182 + AluSx SINE Alu 1 312 0 2797 174 26 11 chrX 84850047 84850586 -92123554 - L1MC3 LINE L1 -2 7783 7237 24 32 0 0 chrX 84850793 84850824 -92123316 + AT_rich Low_complexity Low_complexity 1 31 0 29 47 0 0 chrX 84850905 84850948 -92123192 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chrX 84851119 84851142 -92122998 + AT_rich Low_complexity Low_complexity 1 23 0 2074 253 132 14 chrX 84851592 84852364 -92121776 + L1MC4 LINE L1 7176 8038 -4 314 300 50 0 chrX 84854061 84854201 -92119939 + GA-rich Low_complexity Low_complexity 4 150 0 181 234 92 119 chrX 84854333 84854551 -92119589 + L2 LINE L2 1803 2014 -1300 269 344 50 0 chrX 84855391 84855551 -92118589 - L1ME LINE L1 -5901 169 2 309 281 36 114 chrX 84855809 84855976 -92118164 + L2 LINE L2 3116 3269 -3 1651 114 29 8 chrX 84856308 84856553 -92117587 - AluSg SINE Alu -17 293 44 2504 153 33 24 chrX 84856652 84857078 -92117062 + MSTB1 LTR MaLR 3 432 0 419 357 91 31 chrX 84859765 84860084 -92114056 - L2 LINE L2 0 3272 2935 982 353 80 15 chrX 84860106 84860707 -92113433 - L2 LINE L2 -649 2665 2026 245 235 0 0 chrX 84860855 84860906 -92113234 + L2 LINE L2 3263 3313 0 545 222 83 74 chrX 84861127 84861343 -92112797 - L2 LINE L2 -2 3311 3094 752 157 8 15 chrX 84862945 84863079 -92111061 + AluJ SINE Alu 1 133 -169 310 308 224 6 chrX 84863218 84863374 -92110766 + MIR3 SINE MIR 16 205 -3 1939 123 83 9 chrX 84863551 84863900 -92110240 - THE1C LTR MaLR 0 375 1 2018 153 42 8 chrX 84864080 84864433 -92109707 - MLT1A1 LTR MaLR 0 365 1 2110 73 66 0 chrX 84865382 84865670 -92108470 + AluSg SINE Alu 1 307 -3 378 237 0 0 chrX 84866810 84866907 -92107233 + (TA)n Simple_repeat Simple_repeat 1 97 0 697 130 81 0 chrX 84868311 84868434 -92105706 + L1MA9 LINE L1 6171 6303 -9 879 204 51 0 chrX 84868497 84868673 -92105467 + AluJ SINE Alu 122 306 -6 2245 101 0 10 chrX 84869109 84869417 -92104723 - AluSg SINE Alu -5 305 1 650 238 23 61 chrX 84869520 84869841 -92104299 + MER39 LTR ERV1 1 535 -172 41141 32 21 1 chrX 84869858 84875878 -92098262 + L1PA3 LINE L1 8 6152 -3 225 0 0 0 chrX 84875890 84875915 -92098225 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrX 84875929 84875950 -92098190 + AT_rich Low_complexity Low_complexity 1 21 0 348 193 37 123 chrX 84875958 84876040 -92098100 + MER39 LTR ERV1 537 624 -83 2324 94 0 0 chrX 84876040 84876374 -92097766 + AluSx SINE Alu 1 334 0 348 193 37 123 chrX 84876374 84876418 -92097722 + MER39 LTR ERV1 624 647 -60 213 39 0 0 chrX 84876418 84876444 -92097696 + (TTG)n Simple_repeat Simple_repeat 2 27 0 348 193 37 123 chrX 84876444 84876501 -92097639 + MER39 LTR ERV1 647 707 0 271 185 7 233 chrX 84878192 84878287 -92095853 + L2 LINE L2 3192 3244 -69 735 190 184 6 chrX 84878287 84878466 -92095674 - MER58C DNA MER1_type -4 211 1 271 185 7 233 chrX 84878466 84878516 -92095624 + L2 LINE L2 3244 3304 -9 180 0 0 0 chrX 84878915 84878935 -92095205 + (A)n Simple_repeat Simple_repeat 1 20 0 2352 103 0 3 chrX 84878936 84879248 -92094892 + AluSx SINE Alu 1 311 -1 685 286 12 6 chrX 84881812 84881980 -92092160 + MIR3 SINE MIR 22 190 -18 360 300 73 0 chrX 84882132 84882242 -92091898 + L2 LINE L2 3139 3256 -16 22 0 0 0 chrX 84883262 84883284 -92090856 + AT_rich Low_complexity Low_complexity 1 22 0 2197 123 0 0 chrX 84883284 84883586 -92090554 + AluSx SINE Alu 1 302 -10 384 232 288 24 chrX 84884687 84884869 -92089271 + L2 LINE L2 2758 2891 -422 2450 60 20 0 chrX 84884869 84885167 -92088973 + AluSp SINE Alu 1 304 -9 384 232 288 24 chrX 84885167 84885286 -92088854 + L2 LINE L2 2891 3131 -182 2348 81 0 19 chrX 84885772 84886082 -92088058 - AluSp SINE Alu -9 304 1 353 231 109 27 chrX 84887205 84887352 -92086788 - L3b LINE CR1 -147 1436 1278 667 323 72 6 chrX 84887839 84888201 -92085939 + MARNA DNA Mariner 79 464 -122 242 320 117 0 chrX 84888633 84888736 -92085404 - L2 LINE L2 0 3313 3199 257 392 42 0 chrX 84888938 84889104 -92085036 - L3 LINE CR1 -1189 388 216 1497 88 0 0 chrX 84889563 84889755 -92084385 + AluSp SINE Alu 1 192 -121 2141 113 0 0 chrX 84889865 84890176 -92083964 + AluSx SINE Alu 1 311 0 360 0 0 0 chrX 84891164 84891204 -92082936 + (TA)n Simple_repeat Simple_repeat 2 41 0 1448 151 4 3 chrX 84892191 84892460 -92081680 - L1M4 LINE L1 -342 5814 5552 526 195 57 0 chrX 84892433 84892556 -92081584 + L1PA16 LINE L1 6031 6160 -6 * 671 224 17 11 chrX 84893126 84893305 -92080835 + MER104 DNA MER2_type 1 180 0 1697 154 0 0 chrX 84894198 84894444 -92079696 - AluSx SINE Alu -66 246 1 825 84 9 0 chrX 84895130 84895237 -92078903 + AluSq/x SINE Alu 1 108 -205 350 167 0 0 chrX 84895244 84895310 -92078830 + AluSp/q SINE Alu 238 303 0 2512 75 3 0 chrX 84895493 84895798 -92078342 + AluSp SINE Alu 2 307 -6 678 311 52 52 chrX 84896617 84897041 -92077099 + L1M3b LINE L1 4 513 -5768 1331 223 30 3 chrX 84897260 84897624 -92076516 + L1M3b LINE L1 1039 1412 -4869 1179 131 0 0 chrX 84897634 84897802 -92076338 - AluSx SINE Alu -16 294 127 297 207 0 0 chrX 84897817 84897899 -92076241 + (TA)n Simple_repeat Simple_repeat 1 82 0 899 137 0 15 chrX 84897901 84898032 -92076108 - AluSx SINE Alu -184 129 1 1935 139 7 26 chrX 84898065 84898368 -92075772 - AluSx SINE Alu -15 297 1 21 0 0 0 chrX 84898381 84898402 -92075738 + AT_rich Low_complexity Low_complexity 1 21 0 2314 68 7 0 chrX 84898405 84898736 -92075404 + AluSp SINE Alu 1 333 0 2322 234 60 6 chrX 84898739 84899458 -92074682 + L1M4c LINE L1 1037 1794 -4590 204 356 106 10 chrX 84899731 84899835 -92074305 - L2 LINE L2 -5 3267 3154 2258 102 0 0 chrX 84899974 84900269 -92073871 - AluSq SINE Alu -18 295 1 374 277 42 122 chrX 84901570 84901690 -92072450 - MIR SINE MIR -42 220 127 2090 60 3 121 chrX 84901690 84902022 -92072118 + AluSq SINE Alu 1 293 -20 374 277 42 122 chrX 84902022 84902139 -92072001 - MIR SINE MIR -135 127 2 1573 179 26 100 chrX 84903789 84904180 -92069960 - MLT1A1 LTR MaLR -3 362 1 21 36 0 0 chrX 84904455 84904483 -92069657 + AT_rich Low_complexity Low_complexity 1 28 0 520 343 28 0 chrX 84904674 84904852 -92069288 + MIR SINE MIR 66 248 -14 201 387 32 8 chrX 84906977 84907101 -92067039 - MIR SINE MIR -17 245 119 2107 82 0 4 chrX 84907349 84907616 -92066524 + AluSx SINE Alu 41 306 -6 348 234 15 88 chrX 84909378 84909515 -92064625 + MIR3 SINE MIR 81 207 -1 414 0 0 0 chrX 84909552 84909598 -92064542 + (TA)n Simple_repeat Simple_repeat 2 47 0 333 0 0 0 chrX 84909602 84909639 -92064501 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 305 250 98 27 chrX 84909646 84909758 -92064382 - L1MC4 LINE L1 -1311 6731 6612 267 261 155 43 chrX 84909832 84909993 -92064147 + L3b LINE CR1 1172 1350 -233 2439 93 0 0 chrX 84913123 84913435 -92060705 - AluSq SINE Alu -1 312 1 381 351 107 38 chrX 84913947 84914549 -92059591 - L2 LINE L2 -91 3181 2456 2075 191 21 26 chrX 84914582 84915049 -92059091 - MLT1C LTR MaLR 0 467 3 416 228 115 44 chrX 84915385 84915709 -92058431 - MER72 LTR ERV1 -19 600 263 226 333 37 12 chrX 84915888 84916050 -92058090 - L2 LINE L2 -1216 2098 1933 37 39 0 0 chrX 84916183 84916234 -92057906 + AT_rich Low_complexity Low_complexity 1 51 0 200 349 102 28 chrX 84916994 84917209 -92056931 - L2 LINE L2 -214 3058 2828 192 77 0 0 chrX 84917559 84917585 -92056555 + (T)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chrX 84917620 84917645 -92056495 + AT_rich Low_complexity Low_complexity 1 25 0 22452 28 1 0 chrX 84917645 84921118 -92053022 - L1PA3 LINE L1 -1 6154 2679 2352 103 0 3 chrX 84922433 84922745 -92051395 - AluSx SINE Alu -1 311 1 180 0 0 0 chrX 84922746 84922766 -92051374 + (T)n Simple_repeat Simple_repeat 1 20 0 271 185 7 233 chrX 84923165 84923215 -92050925 - L2 LINE L2 -9 3304 3306 735 190 184 6 chrX 84923215 84923394 -92050746 + MER58C DNA MER1_type 1 211 -4 271 185 7 233 chrX 84923394 84923489 -92050651 - L2 LINE L2 -6 3307 3192 348 193 37 123 chrX 84925180 84925237 -92048903 - MER39 LTR ERV1 0 707 647 213 39 0 0 chrX 84925237 84925263 -92048877 + (CAA)n Simple_repeat Simple_repeat 2 27 0 348 193 37 123 chrX 84925263 84925307 -92048833 - MER39 LTR ERV1 -60 647 601 2323 94 0 0 chrX 84925307 84925641 -92048499 - AluSx SINE Alu 0 334 1 348 193 37 123 chrX 84925641 84925723 -92048417 - MER39 LTR ERV1 -106 601 537 21 0 0 0 chrX 84925731 84925752 -92048388 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chrX 84925766 84925791 -92048349 + (T)n Simple_repeat Simple_repeat 1 25 0 40943 33 22 2 chrX 84925803 84931819 -92042321 - L1PA3 LINE L1 -3 6152 13 1107 331 76 17 chrX 84933357 84933988 -92040152 + L2 LINE L2 1811 2478 -836 289 263 62 12 chrX 84934677 84934757 -92039383 + L2 LINE L2 3185 3268 -4 333 335 110 45 chrX 84935391 84935636 -92038504 - MIR SINE MIR -1 261 1 385 252 158 8 chrX 84935705 84935832 -92038308 - MIR SINE MIR -11 251 106 279 0 0 0 chrX 84936627 84936658 -92037482 + (TA)n Simple_repeat Simple_repeat 1 31 0 2239 105 3 0 chrX 84936674 84936969 -92037171 + AluSx SINE Alu 9 304 -8 265 259 133 29 chrX 84936974 84937283 -92036857 - L1MC4a LINE L1 -95 6026 5686 27 29 0 0 chrX 84938515 84938549 -92035591 + AT_rich Low_complexity Low_complexity 1 34 0 595 309 109 56 chrX 84940809 84941692 -92032448 + L1ME4a LINE L1 4710 5637 -752 322 214 183 0 chrX 84941719 84941850 -92032290 + L1ME4a LINE L1 5820 5974 -147 360 48 65 0 chrX 84943190 84943252 -92030888 + CT-rich Low_complexity Low_complexity 3 68 0 2454 78 16 0 chrX 84943254 84943562 -92030578 - AluSp SINE Alu 0 313 1 212 250 0 0 chrX 84944809 84944853 -92029287 + GA-rich Low_complexity Low_complexity 1 44 0 189 258 21 113 chrX 84945912 84946009 -92028131 + MIR SINE MIR 127 214 -48 195 162 0 0 chrX 84948655 84948692 -92025448 + (CA)n Simple_repeat Simple_repeat 2 38 0 959 220 131 61 chrX 84949387 84949807 -92024333 - MLT1D LTR MaLR -16 451 3 1354 204 34 108 chrX 84949809 84950254 -92023886 - MLT1D-int LTR MaLR 0 1371 960 1125 335 64 50 chrX 84950467 84950925 -92023215 - MLT1D-int LTR MaLR -488 883 406 1715 163 4 7 chrX 84950925 84951202 -92022938 - AluJo SINE Alu -36 276 1 1125 335 64 50 chrX 84951202 84951614 -92022526 - MLT1D-int LTR MaLR -965 406 1 1375 206 149 44 chrX 84951614 84952071 -92022069 - MLT1D LTR MaLR 0 505 1 201 62 94 0 chrX 84952918 84952950 -92021190 + T-rich Low_complexity Low_complexity 1 35 0 253 274 95 11 chrX 84953000 84953095 -92021045 + L3b LINE CR1 1401 1503 -80 21 0 0 0 chrX 84953721 84953742 -92020398 + AT_rich Low_complexity Low_complexity 1 21 0 299 330 70 10 chrX 84953843 84953943 -92020197 - L2 LINE L2 -65 3207 3102 429 331 8 0 chrX 84954121 84954245 -92019895 - L2 LINE L2 -6 3307 3183 221 349 66 38 chrX 84954363 84954575 -92019565 - L2 LINE L2 -531 2783 2566 2209 83 6 45 chrX 84954620 84954932 -92019208 - AluSx SINE Alu -12 300 1 315 159 0 45 chrX 84955101 84955189 -92018951 + CT-rich Low_complexity Low_complexity 3 86 0 191 284 27 14 chrX 84956180 84956254 -92017886 + L2 LINE L2 1878 1952 -1362 1346 114 0 0 chrX 84956374 84956567 -92017573 - L1PB1 LINE L1 -3 6148 5956 215 312 78 97 chrX 84957189 84957458 -92016682 + L2 LINE L2 2939 3202 -70 749 271 72 62 chrX 84958923 84959141 -92014999 - L2 LINE L2 -2 3311 3088 504 45 0 0 chrX 84959141 84959208 -92014932 + (TG)n Simple_repeat Simple_repeat 1 67 0 749 271 72 62 chrX 84959208 84959310 -92014830 - L2 LINE L2 -225 3088 2988 522 300 92 27 chrX 84959373 84959666 -92014474 - MLT1I LTR MaLR 0 409 98 196 274 55 22 chrX 84959733 84959844 -92014296 + MIR SINE MIR 26 144 -64 297 263 0 26 chrX 84960009 84960085 -92014055 + MIR SINE MIR 51 124 -84 663 113 0 10 chrX 84960222 84960319 -92013821 + AluS SINE Alu 1 96 -216 493 307 169 45 chrX 84960477 84961004 -92013136 + L2 LINE L2 2325 2916 -398 1028 187 96 16 chrX 84961013 84961317 -92012823 - MER33 DNA MER1_type -1 323 1 366 310 47 51 chrX 84961570 84961825 -92012315 - L1MC4a LINE L1 -1736 6072 5819 181 331 84 49 chrX 84961848 84961990 -92012150 + L2 LINE L2 3118 3264 -8 1833 91 0 12 chrX 84962101 84962343 -92011797 - AluSg/x SINE Alu -4 306 68 781 278 57 0 chrX 84963061 84963306 -92010834 - MIR SINE MIR -1 261 3 686 199 160 0 chrX 84963544 84963700 -92010440 + MER5A DNA MER1_type 4 184 -5 321 289 77 10 chrX 84966304 84966408 -92007732 + L2 LINE L2 3126 3236 -36 249 108 0 0 chrX 84966414 84966451 -92007689 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 771 212 78 26 chrX 84966956 84967187 -92006953 - MER5C DNA MER1_type -16 308 66 1052 266 16 8 chrX 84967433 84967685 -92006455 + MIR SINE MIR 8 261 -1 1801 189 67 3 chrX 84967696 84968039 -92006101 - MLT1A1 LTR MaLR 0 365 1 530 266 31 8 chrX 84968395 84968523 -92005617 - MER5A DNA MER1_type 0 189 59 467 331 86 60 chrX 84968883 84969621 -92004519 + L2 LINE L2 2575 3312 -1 2386 46 0 0 chrX 84970734 84971059 -92003081 - AluY SINE Alu 0 325 1 198 283 0 0 chrX 84971968 84972014 -92002126 - MIR SINE MIR -132 76 31 199 294 0 0 chrX 84972705 84972756 -92001384 + MIR SINE MIR 102 152 -110 215 288 0 17 chrX 84973280 84973339 -92000801 + MER5A DNA MER1_type 20 77 -112 258 257 38 0 chrX 84973551 84973625 -92000515 - MER5A DNA MER1_type -75 114 21 234 0 0 0 chrX 84973777 84973803 -92000337 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 2413 55 3 0 chrX 84974030 84974323 -91999817 - AluY SINE Alu -17 294 1 183 202 36 95 chrX 84974348 84974432 -91999708 + L2 LINE L2 3183 3261 -52 516 251 30 78 chrX 84974924 84975091 -91999049 + MIR SINE MIR 9 167 -95 478 202 70 9 chrX 84975086 84975200 -91998940 - L2 LINE L2 -1 3312 3192 * 2505 118 3 6 chrX 84975618 84975983 -91998157 + THE1B LTR MaLR 1 364 0 185 244 0 0 chrX 84976962 84977003 -91997137 - L3b LINE CR1 -83 1500 1460 232 246 87 0 chrX 84977418 84977487 -91996653 + MIR SINE MIR 124 198 -64 969 169 5 5 chrX 84977809 84977998 -91996142 + MER53 DNA DNA 1 189 0 467 264 75 31 chrX 84978321 84978480 -91995660 - MER5B DNA MER1_type -3 175 10 21 0 0 0 chrX 84979489 84979510 -91994630 + AT_rich Low_complexity Low_complexity 1 21 0 213 114 0 68 chrX 84979831 84979875 -91994265 + (TTTTC)n Simple_repeat Simple_repeat 2 42 0 451 308 57 6 chrX 84981012 84981171 -91992969 - L2 LINE L2 -2 3311 3145 198 0 0 0 chrX 84981356 84981378 -91992762 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 1567 315 74 58 chrX 84981387 84982551 -91991589 - L2 LINE L2 -433 2881 1699 417 39 0 0 chrX 84982893 84982944 -91991196 + (CA)n Simple_repeat Simple_repeat 1 51 0 2127 139 0 0 chrX 84983525 84983826 -91990314 + AluSx SINE Alu 2 302 -10 1132 38 0 15 chrX 84985257 84985390 -91988750 + AluSg/x SINE Alu 79 209 -103 234 156 0 0 chrX 84985841 84985886 -91988254 + A-rich Low_complexity Low_complexity 1 45 0 507 249 151 44 chrX 84987672 84987897 -91986243 + MIR SINE MIR 14 262 0 2219 91 0 38 chrX 84988128 84988447 -91985693 - AluSx SINE Alu -5 307 1 208 358 82 15 chrX 84988447 84988581 -91985559 - MER5A DNA MER1_type -38 151 9 506 302 29 119 chrX 84989696 84990149 -91983991 + L2 LINE L2 2550 2961 -353 473 301 130 0 chrX 84990207 84990330 -91983810 + L2 LINE L2 3134 3272 0 2119 187 2 2 chrX 84990587 84991041 -91983099 + L1P LINE L1 4685 5138 -1008 248 281 180 0 chrX 84991071 84991160 -91982980 + L2 LINE L2 3207 3311 -2 5248 150 41 18 chrX 84991235 84991383 -91982757 - L1MA9 LINE L1 -3 6309 6166 189 0 0 0 chrX 84991383 84991404 -91982736 + (TG)n Simple_repeat Simple_repeat 2 22 0 5248 150 41 18 chrX 84991404 84992196 -91981944 - L1MA9 LINE L1 -146 6166 5324 2186 106 0 3 chrX 84992196 84992534 -91981606 - AluSg SINE Alu 0 310 1 5248 150 41 18 chrX 84992534 84992871 -91981269 - L1MA9 LINE L1 -988 5324 4996 261 0 0 0 chrX 84992877 84992906 -91981234 + (TA)n Simple_repeat Simple_repeat 1 29 0 3467 219 29 68 chrX 84992928 84993689 -91980451 - L1M4c LINE L1 -2493 4151 3463 1739 177 3 17 chrX 84993689 84994014 -91980126 - AluJo SINE Alu 0 312 1 3467 219 29 68 chrX 84994014 84994588 -91979552 - L1M4c LINE L1 -3181 3463 2868 2371 103 0 0 chrX 84994600 84994912 -91979228 - AluSq SINE Alu -1 312 1 743 143 79 16 chrX 84994912 84995031 -91979109 - FLAM_C SINE Alu -182 130 1 2538 228 35 56 chrX 84995035 84996175 -91977965 - L1M4c LINE L1 -3762 2890 1718 7592 25 0 7 chrX 84996175 84997356 -91976784 + L1PA3 LINE L1 4979 6153 -2 2538 228 35 56 chrX 84997356 84998176 -91975964 - L1M4c LINE L1 -4934 1718 882 1970 257 59 69 chrX 84998174 84998671 -91975469 - L1ME LINE L1 -2831 3551 3050 * 2001 173 34 18 chrX 84998671 84999117 -91975023 - L1MA9 LINE L1 0 6312 5860 1970 257 59 69 chrX 84999117 84999155 -91974985 - L1ME LINE L1 -3332 3050 3013 3737 60 0 0 chrX 84999155 84999621 -91974519 - L1PA5 LINE L1 -7 6147 5682 1970 257 59 69 chrX 84999621 85000411 -91973729 - L1ME LINE L1 -3369 3013 2286 1637 164 15 7 chrX 85000427 85000696 -91973444 - AluJo SINE Alu -41 271 1 2373 87 0 3 chrX 85000703 85001002 -91973138 - AluSq SINE Alu -15 298 1 328 276 39 24 chrX 85001007 85001134 -91973006 - L1ME LINE L1 -4248 2315 2187 440 220 35 51 chrX 85001167 85001383 -91972757 - L1ME LINE L1 -4826 1556 1251 949 224 34 0 chrX 85001413 85001618 -91972522 + MER58C DNA MER1_type 3 214 -1 492 261 0 24 chrX 85001766 85001931 -91972209 - L1ME LINE L1 -5860 512 352 357 315 142 8 chrX 85002213 85002340 -91971800 - L3 LINE CR1 -3 1574 1431 222 105 0 0 chrX 85003604 85003642 -91970498 + (GA)n Simple_repeat Simple_repeat 2 39 0 365 81 16 0 chrX 85003772 85003834 -91970306 + (TG)n Simple_repeat Simple_repeat 1 63 0 275 305 17 17 chrX 85005483 85005657 -91968483 + L1ME LINE L1 5632 5805 -316 189 74 0 0 chrX 85005747 85005774 -91968366 + (TG)n Simple_repeat Simple_repeat 1 27 0 370 193 13 127 chrX 85005896 85006046 -91968094 - MLT1H LTR MaLR -53 496 364 4657 134 13 28 chrX 85006195 85007050 -91967090 - L1MB2 LINE L1 -3 6168 5327 333 47 0 0 chrX 85007054 85007097 -91967043 + (TG)n Simple_repeat Simple_repeat 2 44 0 310 298 44 9 chrX 85010242 85010356 -91963784 - MIR SINE MIR -113 149 32 332 243 39 0 chrX 85010919 85011022 -91963118 + L1ME3A LINE L1 5158 5264 -882 333 47 0 0 chrX 85011035 85011078 -91963062 + (CA)n Simple_repeat Simple_repeat 2 44 0 404 129 14 0 chrX 85011190 85011260 -91962880 + MSTB1 LTR MaLR 362 432 0 330 269 137 11 chrX 85011426 85011601 -91962539 + L1ME3A LINE L1 5755 5951 -219 207 0 0 0 chrX 85011877 85011900 -91962240 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2191 89 0 7 chrX 85011902 85012184 -91961956 - AluSg SINE Alu -30 280 1 2721 119 23 14 chrX 85013647 85014075 -91960065 + MSTB1 LTR MaLR 1 432 0 198 280 296 0 chrX 85014985 85015117 -91959023 - MIR SINE MIR -90 172 2 1197 270 125 4 chrX 85016756 85017212 -91956928 + MLT1J LTR MaLR 1 511 0 2284 89 17 0 chrX 85018561 85018853 -91955287 + AluSx SINE Alu 6 302 -10 400 273 25 56 chrX 85019081 85019242 -91954898 - MIR SINE MIR -7 255 100 378 296 37 9 chrX 85019259 85019367 -91954773 + L2 LINE L2 3187 3297 -16 742 193 122 70 chrX 85019982 85020195 -91953945 - MER58A DNA MER1_type 0 224 1 266 118 20 0 chrX 85021659 85021710 -91952430 - L1MC4 LINE L1 -2 8040 7989 1581 244 68 44 chrX 85021724 85022297 -91951843 - L1MC4 LINE L1 -149 7893 7307 333 217 75 0 chrX 85022307 85022413 -91951727 - L1MD3 LINE L1 -10 7985 7872 2821 181 12 0 chrX 85022575 85023088 -91951052 - L1MB5 LINE L1 -8 6166 5648 4007 188 26 66 chrX 85023197 85024665 -91949475 - L1MB5 LINE L1 -536 5644 4215 1581 221 18 63 chrX 85024674 85025121 -91949019 - L1MC4 LINE L1 -1030 7012 6586 2414 81 3 0 chrX 85025259 85025557 -91948583 + AluSq SINE Alu 1 299 -14 352 261 45 27 chrX 85026013 85026124 -91948016 + MER5B DNA MER1_type 62 174 -4 556 271 152 0 chrX 85026136 85026287 -91947853 - MER5A DNA MER1_type 0 189 16 228 263 202 26 chrX 85027130 85027244 -91946896 + MIR SINE MIR 1 134 -128 235 211 100 67 chrX 85027479 85027569 -91946571 + L2 LINE L2 3162 3254 -18 560 112 0 11 chrX 85027728 85027817 -91946323 - AluS SINE Alu -225 88 1 307 227 52 52 chrX 85028070 85028167 -91945973 - MIR3 SINE MIR -2 206 110 247 222 56 0 chrX 85029807 85029861 -91944279 + L2 LINE L2 3250 3306 -7 239 0 32 0 chrX 85029871 85029902 -91944238 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2084 64 3 39 chrX 85031072 85031354 -91942786 - AluY SINE Alu 0 311 40 2121 151 0 0 chrX 85032032 85032343 -91941797 + AluSq SINE Alu 1 311 -2 201 171 0 0 chrX 85032345 85032380 -91941760 - MER5A DNA MER1_type -52 137 103 21 0 0 0 chrX 85032380 85032401 -91941739 + AT_rich Low_complexity Low_complexity 1 21 0 4812 124 44 7 chrX 85032424 85033262 -91940878 - L1MA8 LINE L1 -6 6285 5417 2328 86 0 46 chrX 85033444 85033770 -91940370 - AluY SINE Alu 0 311 1 524 259 79 80 chrX 85033863 85034300 -91939840 - MLT1F LTR MaLR -5 537 125 185 32 0 65 chrX 85034300 85034331 -91939809 + (GGGTG)n Simple_repeat Simple_repeat 1 29 0 524 259 79 80 chrX 85034331 85034456 -91939684 - MLT1F LTR MaLR -417 125 1 203 363 65 16 chrX 85034558 85034682 -91939458 - L2 LINE L2 -20 3293 3164 1941 120 0 15 chrX 85035273 85035547 -91938593 + AluSx SINE Alu 24 293 -19 420 288 36 0 chrX 85036487 85036598 -91937542 + L2 LINE L2 3199 3313 0 285 342 65 35 chrX 85036617 85036848 -91937292 - L3b LINE CR1 -24 1559 1322 253 97 32 16 chrX 85037759 85037821 -91936319 - L1M4 LINE L1 -799 5347 5285 495 65 0 0 chrX 85037826 85037888 -91936252 - MER5A DNA MER1_type -126 63 2 1018 234 55 51 chrX 85038258 85038514 -91935626 - MIR SINE MIR -3 259 3 324 70 0 0 chrX 85038548 85038591 -91935549 + (GA)n Simple_repeat Simple_repeat 1 43 0 714 301 36 5 chrX 85038918 85039137 -91935003 + MIR SINE MIR 24 249 -13 744 197 37 48 chrX 85039205 85039393 -91934747 + MER5A DNA MER1_type 3 188 -1 711 182 104 19 chrX 85039394 85039548 -91934592 - MIR SINE MIR -46 216 50 22 0 0 0 chrX 85039549 85039571 -91934569 + AT_rich Low_complexity Low_complexity 1 22 0 2429 56 0 0 chrX 85040243 85040545 -91933595 + AluY SINE Alu 1 302 -9 687 121 61 15 chrX 85041035 85041167 -91932973 - L1MB5 LINE L1 0 6174 6037 484 88 12 0 chrX 85041276 85041356 -91932784 + L1M LINE L1 5345 5425 -866 6336 94 15 7 chrX 85041356 85042873 -91931267 - L1PA16 LINE L1 -5 6161 4642 306 0 0 0 chrX 85042873 85042907 -91931233 + (T)n Simple_repeat Simple_repeat 1 34 0 1183 174 17 22 chrX 85042907 85043137 -91931003 + AluSq SINE Alu 1 229 -84 369 247 89 68 chrX 85044278 85044313 -91929827 + MIR3 SINE MIR 44 77 -131 2058 124 14 0 chrX 85044313 85044603 -91929537 + AluSx SINE Alu 1 294 -18 369 247 89 68 chrX 85044603 85044713 -91929427 + MIR3 SINE MIR 77 192 -16 273 163 0 0 chrX 85045128 85045177 -91928963 + (TA)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chrX 85045279 85045317 -91928823 + AT_rich Low_complexity Low_complexity 1 38 0 306 164 0 0 chrX 85045321 85045376 -91928764 + (TA)n Simple_repeat Simple_repeat 2 56 0 3501 161 15 26 chrX 85046604 85046942 -91927198 - L1MB5 LINE L1 -8 6166 5839 2529 63 0 0 chrX 85046942 85047242 -91926898 - AluY SINE Alu -11 300 1 3501 161 15 26 chrX 85047242 85047586 -91926554 - L1MB5 LINE L1 -335 5839 5492 454 305 42 39 chrX 85048442 85048701 -91925439 + HAL1 LINE L1 1 260 -2247 1442 123 0 25 chrX 85048728 85048932 -91925208 + AluJb SINE Alu 86 284 -28 2788 251 109 45 chrX 85049001 85050309 -91923831 + HAL1 LINE L1 420 1810 -697 24 0 0 0 chrX 85050393 85050417 -91923723 + AT_rich Low_complexity Low_complexity 1 24 0 522 213 31 0 chrX 85050566 85050693 -91923447 + MER3 DNA MER1_type 38 168 -41 * 1467 183 78 3 chrX 85050680 85051062 -91923078 + MER3 DNA MER1_type 2214 2624 0 312 40 40 0 chrX 85051218 85051268 -91922872 - L1MA4A LINE L1 -6 6297 6246 1038 237 114 13 chrX 85051372 85051689 -91922451 + LTR16A LTR ERVL 102 450 0 180 0 0 0 chrX 85051732 85051752 -91922388 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 6468 80 0 3 chrX 85051752 85052848 -91921292 - L1PA10 LINE L1 -19 6149 5060 457 306 61 61 chrX 85052870 85053160 -91920980 + L1MC/D LINE L1 5067 5359 -787 1723 103 18 129 chrX 85053160 85053500 -91920640 + AluSx SINE Alu 1 302 0 457 306 61 61 chrX 85053500 85053539 -91920601 + L1MC/D LINE L1 5358 5396 -750 382 302 68 16 chrX 85053596 85053848 -91920292 + L1MC/D LINE L1 5467 5731 -2077 246 231 29 58 chrX 85053837 85053941 -91920199 + L1 LINE L1 4919 5019 -1127 * 36 0 0 0 chrX 85054275 85054311 -91919829 + AT_rich Low_complexity Low_complexity 1 36 0 482 333 24 12 chrX 85054388 85054553 -91919587 + MIR3 SINE MIR 21 187 -21 1701 183 0 20 chrX 85055203 85055504 -91918636 + AluJo SINE Alu 1 295 -17 2301 103 0 0 chrX 85055571 85055871 -91918269 - AluSc SINE Alu -9 300 1 787 312 8 20 chrX 85056684 85056934 -91917206 - MIR SINE MIR 0 262 16 24891 26 1 0 chrX 85057999 85061873 -91912267 + L1PA3 LINE L1 2246 6122 -33 459 266 0 0 chrX 85062081 85062190 -91911950 - MLT1A1 LTR MaLR -72 293 185 740 226 133 18 chrX 85062277 85062503 -91911637 - L2 LINE L2 -4 3309 3058 832 209 125 79 chrX 85062505 85062912 -91911228 + MLT1A1 LTR MaLR 1 363 -2 217 313 0 0 chrX 85062915 85062963 -91911177 - L2 LINE L2 -258 3055 3008 * 555 245 43 105 chrX 85062931 85063188 -91910952 + MIR SINE MIR 18 258 -4 845 149 7 7 chrX 85063199 85063342 -91910798 + Tigger2 DNA MER2_type 1 143 -2575 2686 181 64 27 chrX 85063342 85064101 -91910039 - LTR1B LTR ERV1 0 826 1 * 3324 118 55 15 chrX 85064101 85064683 -91909457 + Tigger2 DNA MER2_type 140 744 -1974 1454 156 8 4 chrX 85064749 85065006 -91909134 + Tigger2 DNA MER2_type 2451 2708 -10 182 364 87 47 chrX 85066608 85066861 -91907279 + L2 LINE L2 453 715 -2599 203 355 76 47 chrX 85066864 85067036 -91907104 + MER5B DNA MER1_type 1 177 -1 3070 133 113 44 chrX 85067116 85067795 -91906345 - LTR8A LTR ERV1 -1 726 1 210 341 47 8 chrX 85067803 85067932 -91906208 + L2 LINE L2 825 958 -2356 324 323 69 64 chrX 85068046 85068459 -91905681 + L2 LINE L2 2638 3037 -235 241 283 170 28 chrX 85069084 85069190 -91904950 + L2 LINE L2 3193 3313 0 2273 125 36 26 chrX 85069494 85069966 -91904174 - L1M4 LINE L1 -499 5675 5197 851 247 65 50 chrX 85070062 85070341 -91903799 + MLT1I LTR MaLR 127 409 0 417 330 57 96 chrX 85070447 85070544 -91903596 + L2 LINE L2 2628 2727 -586 1880 125 98 0 chrX 85070544 85070871 -91903269 - MER46B DNA MER2_type -2 234 1 417 330 57 96 chrX 85070871 85071463 -91902677 + L2 LINE L2 2727 3282 -31 188 367 102 0 chrX 85072015 85072113 -91902027 - L2 LINE L2 -7 3265 3158 300 352 0 0 chrX 85072737 85072845 -91901295 - MER58A DNA MER1_type 0 108 1 275 353 8 8 chrX 85073044 85073163 -91900977 - L2 LINE L2 -237 3035 2917 562 281 18 55 chrX 85074831 85075048 -91899092 - MIR SINE MIR -28 234 26 315 253 191 25 chrX 85075060 85075222 -91898918 - MER5A DNA MER1_type 0 189 1 344 316 41 47 chrX 85075356 85075527 -91898613 + L1ME LINE L1 2667 2836 -3310 482 260 26 13 chrX 85077151 85077305 -91896835 + L1ME LINE L1 5537 5692 -429 788 240 61 49 chrX 85077393 85077473 -91896667 - L1ME4a LINE L1 -80 6041 5963 2051 188 59 45 chrX 85077473 85077967 -91896173 - MLT1D LTR MaLR -4 501 1 788 240 61 49 chrX 85077967 85078295 -91895845 - L1ME4a LINE L1 -158 5963 5628 444 324 50 65 chrX 85078395 85078897 -91895243 + L2 LINE L2 2554 3046 -226 284 279 10 0 chrX 85079008 85079112 -91895028 + L1M4 LINE L1 2395 2499 -3647 28 0 0 0 chrX 85079190 85079218 -91894922 + AT_rich Low_complexity Low_complexity 1 28 0 467 287 73 52 chrX 85079296 85079773 -91894367 - L1MEc LINE L1 -4644 1752 1266 1700 225 35 7 chrX 85080042 85080477 -91893663 - L1ME3A LINE L1 -3 6167 5721 517 256 7 0 chrX 85080488 85080625 -91893515 - L1ME3A LINE L1 -548 5622 5485 3858 93 3 71 chrX 85080626 85081039 -91893101 + L1MA2 LINE L1 5392 5741 -563 7073 55 3 1 chrX 85081039 85082083 -91892057 + L1PA7 LINE L1 5104 6149 -5 3858 93 3 71 chrX 85082083 85082357 -91891783 + L1MA2 LINE L1 5741 6032 -272 859 238 40 40 chrX 85083065 85083313 -91890827 - MIR SINE MIR -13 249 2 186 189 0 0 chrX 85083329 85083366 -91890774 + CT-rich Low_complexity Low_complexity 2 38 0 589 257 28 35 chrX 85083709 85083853 -91890287 - L2 LINE L2 0 3313 3171 2091 132 36 33 chrX 85083867 85084230 -91889910 - THE1B LTR MaLR 0 364 1 1407 272 98 24 chrX 85084262 85084595 -91889545 - L2 LINE L2 -341 2973 2589 2381 74 0 7 chrX 85084595 85084893 -91889247 + AluSq SINE Alu 1 296 -17 1407 272 98 24 chrX 85084893 85085059 -91889081 - L2 LINE L2 -725 2589 2437 251 183 226 0 chrX 85085068 85085161 -91888979 - MER69 DNA AcHobo -9 2517 2404 645 160 67 33 chrX 85085172 85085322 -91888818 + MLT1F LTR MaLR 355 509 -33 1057 244 25 17 chrX 85085363 85085839 -91888301 + MLT1F-int LTR MaLR 3 599 -772 254 320 105 17 chrX 85086038 85086210 -91887930 + MLT1F-int LTR MaLR 699 885 -486 2228 24 0 0 chrX 85086226 85086476 -91887664 - AluY SINE Alu -6 305 56 1720 109 49 86 chrX 85086776 85087161 -91886979 + THE1C LTR MaLR 3 373 -2 308 289 59 20 chrX 85087250 85087402 -91886738 + MLT1F-int LTR MaLR 1214 1371 0 2304 251 21 4 chrX 85087402 85087919 -91886221 + MLT1F LTR MaLR 1 526 -16 3213 159 123 14 chrX 85087969 85088795 -91885345 - MER69 DNA AcHobo -117 2409 1489 2648 155 42 76 chrX 85088795 85089324 -91884816 + MLT2B2 LTR ERVL 1 511 -4 3213 159 123 14 chrX 85089324 85089337 -91884803 - MER69 DNA AcHobo -1037 1489 1479 431 258 48 8 chrX 85089386 85089510 -91884630 - MER69 DNA AcHobo -1097 129 1 2822 274 70 46 chrX 85089513 85089629 -91884511 - L2 LINE L2 -873 2441 2329 434 246 79 16 chrX 85089629 85089755 -91884385 + MER94 DNA DNA 1 134 0 2822 274 70 46 chrX 85089755 85090139 -91884001 - L2 LINE L2 -985 2329 1956 916 221 0 22 chrX 85090139 85090320 -91883820 - MER45A DNA AcHobo -1 177 1 2822 274 70 46 chrX 85090320 85090411 -91883729 - L2 LINE L2 -1358 1956 1869 2395 166 0 0 chrX 85090411 85090814 -91883326 + MER57A LTR ERV1 1 403 0 2822 274 70 46 chrX 85090814 85091314 -91882826 - L2 LINE L2 -1445 1869 1321 200 250 139 42 chrX 85091299 85091371 -91882769 + L2 LINE L2 3207 3285 -28 * 225 0 0 0 chrX 85091648 85091673 -91882467 + (T)n Simple_repeat Simple_repeat 1 25 0 185 94 31 0 chrX 85091767 85091799 -91882341 + GA-rich Low_complexity Low_complexity 2 34 0 427 246 88 0 chrX 85092086 85092257 -91881883 - L1ME4a LINE L1 -198 5923 5738 22 0 0 0 chrX 85092523 85092545 -91881595 + AT_rich Low_complexity Low_complexity 1 22 0 2597 209 91 55 chrX 85093195 85094021 -91880119 - MER21B LTR ERV1 0 863 8 196 235 15 88 chrX 85094127 85094195 -91879945 - MIR SINE MIR -116 146 84 406 269 113 0 chrX 85094497 85094638 -91879502 + MIR SINE MIR 90 246 -16 2233 93 3 3 chrX 85094813 85095134 -91879006 + THE1C LTR MaLR 1 321 -54 10865 101 30 12 chrX 85095158 85096710 -91877430 + THE1C-int LTR MaLR 1 1580 0 2690 111 0 13 chrX 85096710 85097090 -91877050 + THE1C LTR MaLR 1 375 0 1997 193 97 63 chrX 85099564 85100265 -91873875 - MER50 LTR ERV1 0 734 10 199 178 0 67 chrX 85100479 85100524 -91873616 - MIR3 SINE MIR -54 154 113 2147 118 0 38 chrX 85100536 85100851 -91873289 - AluSx SINE Alu -9 303 1 247 88 0 0 chrX 85100918 85100952 -91873188 + L2 LINE L2 3270 3303 -10 1363 183 8 16 chrX 85101987 85102238 -91871902 - AluJb SINE Alu -22 290 42 243 294 105 21 chrX 85102471 85102614 -91871526 + MLT1J1 LTR MaLR 286 440 -6 2032 119 90 0 chrX 85102921 85103256 -91870884 + MER47A DNA MER2_type 2 366 0 643 260 101 35 chrX 85104268 85104495 -91869645 + MIR SINE MIR 19 260 -2 768 99 0 0 chrX 85304654 85304765 -91669375 + (TA)n Simple_repeat Simple_repeat 1 111 0 1699 145 16 68 chrX 85304765 85305075 -91669065 - AluSx SINE Alu -18 294 1 319 330 0 27 chrX 85305138 85305250 -91668890 + L3 LINE CR1 1468 1576 -1 292 287 11 11 chrX 85305611 85305705 -91668435 + (TATG)n Simple_repeat Simple_repeat 1 94 0 335 341 133 61 chrX 85307186 85307793 -91666347 + L2 LINE L2 2257 2907 -407 2333 63 7 0 chrX 85308351 85308664 -91665476 + AluSp SINE Alu 1 315 0 1689 157 11 15 chrX 85308696 85308964 -91665176 + AluSx SINE Alu 7 273 -39 264 30 0 0 chrX 85308970 85309003 -91665137 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5401 96 4 2 chrX 85309003 85309987 -91664153 + L1PA8A LINE L1 4600 5649 -482 2115 124 38 12 chrX 85309987 85310333 -91663807 + THE1A LTR MaLR 1 355 0 5401 96 4 2 chrX 85310333 85310818 -91663322 + L1PA8A LINE L1 5649 6131 0 1406 183 34 93 chrX 85310968 85311356 -91662784 - MLT1A1 LTR MaLR 0 365 1 1807 84 0 0 chrX 85311392 85311617 -91662523 + AluSg/x SINE Alu 83 307 -3 1574 147 3 97 chrX 85311814 85312134 -91662006 - AluJb SINE Alu -22 290 1 344 326 43 38 chrX 85312654 85312838 -91661302 + MIR3 SINE MIR 18 202 -6 2056 140 10 3 chrX 85312915 85313229 -91660911 - MER2 DNA MER2_type -3 342 27 2382 53 0 0 chrX 85313234 85313560 -91660580 + AluY SINE Alu 1 326 0 334 320 31 8 chrX 85315782 85315910 -91658230 + MIR SINE MIR 76 206 -56 214 125 77 39 chrX 85315932 85316036 -91658104 + (TTATA)n Simple_repeat Simple_repeat 5 112 0 1766 172 7 14 chrX 85316130 85316426 -91657714 - AluJb SINE Alu -18 294 1 21 57 0 0 chrX 85316610 85316645 -91657495 + AT_rich Low_complexity Low_complexity 1 35 0 1382 200 32 28 chrX 85316645 85316930 -91657210 - AluJb SINE Alu -26 286 1 2511 44 0 0 chrX 85318096 85318390 -91655750 - AluY SINE Alu -17 294 1 210 300 22 78 chrX 85318594 85318684 -91655456 - L3 LINE CR1 -400 1177 1093 477 294 156 36 chrX 85318701 85318875 -91655265 + L1ME4a LINE L1 5683 5835 -286 2025 122 11 0 chrX 85318875 85319180 -91654960 + AluSx SINE Alu 1 308 0 477 294 156 36 chrX 85319180 85319395 -91654745 + L1ME4a LINE L1 5835 6120 -1 3095 278 64 43 chrX 85319443 85320163 -91653977 + L2 LINE L2 1795 2556 -757 1669 195 3 13 chrX 85320163 85320466 -91653674 - AluJb SINE Alu -12 300 1 3095 278 64 43 chrX 85320466 85320931 -91653209 + L2 LINE L2 2556 3009 -304 967 244 20 49 chrX 85320974 85321393 -91652747 + MLT1A2 LTR MaLR 1 372 -2 465 239 6 75 chrX 85321395 85321554 -91652586 + L2 LINE L2 3161 3308 -5 626 277 87 60 chrX 85321554 85321662 -91652478 + L1ME3A LINE L1 5039 5143 -1027 2095 108 10 10 chrX 85321662 85321959 -91652181 + AluSx SINE Alu 1 297 -15 626 277 87 60 chrX 85321959 85322441 -91651699 + L1ME3A LINE L1 5143 5643 -527 785 208 29 102 chrX 85322452 85322697 -91651443 + Charlie1 DNA MER1_type 1 227 -2534 382 240 32 32 chrX 85322704 85322829 -91651311 + Charlie1 DNA MER1_type 2635 2759 -2 534 283 32 58 chrX 85322830 85323127 -91651013 + L1ME3A LINE L1 5649 5937 -225 308 308 8 33 chrX 85323210 85323330 -91650810 + L1ME3A LINE L1 5963 6079 -91 21 95 0 0 chrX 85323919 85323982 -91650158 + AT_rich Low_complexity Low_complexity 1 63 0 185 208 0 19 chrX 85324102 85324155 -91649985 + GA-rich Low_complexity Low_complexity 1 52 0 761 139 90 0 chrX 85324257 85324379 -91649761 + AluSq/x SINE Alu 1 133 -180 2345 89 3 10 chrX 85324981 85325294 -91648846 - AluSp SINE Alu -2 311 1 808 199 37 12 chrX 85325356 85325517 -91648623 - FRAM SINE Alu -8 168 4 275 353 71 24 chrX 85325764 85325934 -91648206 + L2 LINE L2 2913 3090 -182 280 311 46 57 chrX 85326992 85327173 -91646967 - MIR SINE MIR -50 212 38 192 40 0 0 chrX 85327234 85327259 -91646881 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chrX 85327335 85327357 -91646783 + AT_rich Low_complexity Low_complexity 1 22 0 295 283 9 26 chrX 85330509 85330622 -91643518 + L1ME LINE L1 5468 5578 -543 227 333 67 0 chrX 85331546 85331606 -91642534 + L2 LINE L2 3174 3237 -35 1730 151 57 0 chrX 85331706 85331971 -91642169 - AluSg SINE Alu -30 280 1 863 246 36 0 chrX 85332206 85332401 -91641739 + MIR SINE MIR 50 251 -11 28646 131 19 53 chrX 85333507 85339915 -91634225 - L1PA8 LINE L1 0 6172 4 223 161 16 32 chrX 85340443 85340505 -91633635 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 213 121 0 0 chrX 85340588 85340621 -91633519 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 204 0 0 chrX 85341489 85341538 -91632602 + (TA)n Simple_repeat Simple_repeat 2 50 0 351 0 0 0 chrX 85341538 85341577 -91632563 + (TG)n Simple_repeat Simple_repeat 2 40 0 2160 113 3 10 chrX 85342770 85343070 -91631070 + AluSq SINE Alu 16 313 0 378 107 0 0 chrX 85343587 85343643 -91630497 + (TG)n Simple_repeat Simple_repeat 2 57 0 2490 83 0 0 chrX 85344161 85344462 -91629678 - AluSx SINE Alu -11 301 1 21 0 0 0 chrX 85344557 85344578 -91629562 + AT_rich Low_complexity Low_complexity 1 21 0 2447 50 7 10 chrX 85345257 85345556 -91628584 + AluY SINE Alu 1 298 -13 395 273 14 81 chrX 85345669 85345874 -91628266 + MIR SINE MIR 15 206 -56 24 53 0 0 chrX 85345909 85345947 -91628193 + AT_rich Low_complexity Low_complexity 1 38 0 1907 131 3 3 chrX 85346527 85346809 -91627331 + AluJb SINE Alu 1 282 -30 366 360 7 22 chrX 85346906 85347045 -91627095 + MIR3 SINE MIR 23 159 -49 193 288 0 55 chrX 85347260 85347333 -91626807 - MER5C DNA MER1_type -238 86 18 2290 109 0 13 chrX 85347526 85347839 -91626301 - AluSg SINE Alu 0 310 2 296 56 0 0 chrX 85348456 85348492 -91625648 - U2 snRNA snRNA -152 36 1 2267 101 10 0 chrX 85348495 85348803 -91625337 - AluSp SINE Alu -2 311 1 2138 101 45 0 chrX 85348995 85349283 -91624857 - AluSg SINE Alu -9 301 1 22 0 0 0 chrX 85351048 85351070 -91623070 + AT_rich Low_complexity Low_complexity 1 22 0 2053 119 37 0 chrX 85352273 85352567 -91621573 + AluSx SINE Alu 1 305 -7 1573 321 50 61 chrX 85353387 85354324 -91619816 + L3 LINE CR1 450 1376 -201 633 90 0 0 chrX 85354328 85354417 -91619723 + (TA)n Simple_repeat Simple_repeat 2 90 0 672 101 0 10 chrX 85354519 85354618 -91619522 + AluSg/x SINE Alu 185 305 0 208 0 0 0 chrX 85354618 85354641 -91619499 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 484 284 90 63 chrX 85354832 85355131 -91619009 + L2 LINE L2 3006 3312 -1 246 316 76 55 chrX 85356254 85356491 -91617649 + L1MEd LINE L1 110 351 -5768 1563 170 0 61 chrX 85356639 85356968 -91617172 + AluJo SINE Alu 1 309 -3 339 325 25 25 chrX 85357049 85357209 -91616931 + L1MEd LINE L1 640 799 -5320 1798 138 0 35 chrX 85357321 85357603 -91616537 + AluJb SINE Alu 8 279 -33 1070 224 34 4 chrX 85357679 85357916 -91616224 - MIR SINE MIR -17 245 2 247 252 36 27 chrX 85358100 85358211 -91615929 + L1MEd LINE L1 1044 1155 -4964 184 397 0 0 chrX 85358404 85358477 -91615663 + L2 LINE L2 2685 2757 -557 1143 170 38 14 chrX 85358514 85358726 -91615414 + AluSg/x SINE Alu 85 301 -11 298 340 0 10 chrX 85358872 85358972 -91615168 - MIR SINE MIR -65 143 45 234 81 0 0 chrX 85359061 85359098 -91615042 + (A)n Simple_repeat Simple_repeat 1 37 0 266 26 53 0 chrX 85359644 85359682 -91614458 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1649 238 58 49 chrX 85359684 85360217 -91613923 + LTR26 LTR ERV1 66 603 0 2906 107 159 16 chrX 85362385 85362759 -91611381 - MER41C LTR ERV1 0 554 93 2238 88 7 0 chrX 85362759 85363093 -91611047 - AluSp SINE Alu 0 336 1 2906 107 159 16 chrX 85363093 85363202 -91610938 - MER41C LTR ERV1 -461 93 1 2391 80 3 0 chrX 85364604 85364904 -91609236 - AluSg SINE Alu -9 301 1 26 50 0 0 chrX 85365719 85365759 -91608381 + AT_rich Low_complexity Low_complexity 1 40 0 310 250 0 0 chrX 85365841 85365909 -91608231 + MIR SINE MIR 74 141 -67 2422 80 0 6 chrX 85366512 85366823 -91607317 - AluSq SINE Alu -2 311 3 297 348 27 0 chrX 85367040 85367152 -91606988 - MIR SINE MIR -67 141 27 2070 175 15 35 chrX 85367287 85367686 -91606454 + MSTD LTR MaLR 1 391 -5 853 220 34 0 chrX 85368857 85369066 -91605074 - L1ME3A LINE L1 -14 6156 5941 773 91 25 8 chrX 85369986 85370107 -91604033 + L1MB1 LINE L1 6046 6168 0 2484 60 0 0 chrX 85370375 85370676 -91603464 - AluY SINE Alu -10 301 1 425 154 128 0 chrX 85371451 85371529 -91602611 - 5S rRNA rRNA -32 89 2 425 278 37 0 chrX 85371940 85372048 -91602092 + MIR3 SINE MIR 71 182 -26 189 265 0 20 chrX 85372050 85372099 -91602041 + L3 LINE CR1 1525 1572 -5 28 29 0 0 chrX 85372336 85372371 -91601769 + AT_rich Low_complexity Low_complexity 1 35 0 188 185 19 0 chrX 85372695 85372749 -91601391 + (TA)n Simple_repeat Simple_repeat 1 55 0 270 136 0 0 chrX 85374092 85374136 -91600004 + (A)n Simple_repeat Simple_repeat 1 44 0 25 65 0 0 chrX 85374587 85374633 -91599507 + AT_rich Low_complexity Low_complexity 1 46 0 609 14 0 0 chrX 85374785 85374855 -91599285 + (CTA)n Simple_repeat Simple_repeat 2 71 0 393 330 45 11 chrX 85374881 85375060 -91599080 - MIR SINE MIR -25 237 53 2178 92 0 7 chrX 85375073 85375389 -91598751 + AluSg SINE Alu 1 314 0 239 137 0 20 chrX 85375498 85375549 -91598591 + (TA)n Simple_repeat Simple_repeat 2 51 0 4029 136 19 18 chrX 85375556 85375791 -91598349 - L1MA4A LINE L1 -5 6298 6065 1303 154 108 29 chrX 85375791 85376070 -91598070 - AluJo SINE Alu -11 301 1 4029 136 19 18 chrX 85376070 85376517 -91597623 - L1MA4A LINE L1 -238 6065 5615 285 293 13 13 chrX 85376531 85376688 -91597452 + (TA)n Simple_repeat Simple_repeat 1 157 0 25 51 0 0 chrX 85380355 85380394 -91593746 + AT_rich Low_complexity Low_complexity 1 39 0 42 36 0 0 chrX 85380788 85380844 -91593296 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chrX 85381471 85381499 -91592641 + AT_rich Low_complexity Low_complexity 1 28 0 602 308 84 24 chrX 85382013 85382263 -91591877 - L3b LINE CR1 -167 1416 1152 471 315 139 34 chrX 85382325 85382769 -91591371 + L2 LINE L2 2771 3265 -7 336 48 0 0 chrX 85382830 85382872 -91591268 + (TA)n Simple_repeat Simple_repeat 1 42 0 644 289 26 16 chrX 85383671 85383865 -91590275 + MIR SINE MIR 8 203 -59 391 300 0 18 chrX 85384025 85384135 -91590005 + L2 LINE L2 3206 3313 0 300 311 143 41 chrX 85384287 85384483 -91589657 - MIR SINE MIR -6 256 41 2064 95 0 44 chrX 85384626 85384951 -91589189 + AluSx SINE Alu 1 312 0 207 317 129 0 chrX 85384999 85385100 -91589040 + L2 LINE L2 3124 3237 -76 877 148 0 116 chrX 85385463 85385652 -91588488 + MER5A DNA MER1_type 4 170 -19 2255 116 3 0 chrX 85386551 85386861 -91587279 + AluSq SINE Alu 1 311 -2 21 36 0 0 chrX 85388390 85388418 -91585722 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 85388885 85388906 -91585234 + AT_rich Low_complexity Low_complexity 1 21 0 1845 150 7 3 chrX 85389008 85389295 -91584845 - AluJb SINE Alu -4 308 21 455 253 32 0 chrX 85389295 85389390 -91584750 - AluJ/FLAM SINE Alu -211 101 4 4804 174 20 6 chrX 85389392 85390349 -91583791 - L1MB3 LINE L1 -44 6139 5173 275 312 127 13 chrX 85390352 85390589 -91583551 - L1ME LINE L1 -467 5703 5440 1918 131 0 0 chrX 85390673 85390940 -91583200 + AluSg SINE Alu 1 267 -43 789 19 19 9 chrX 85390940 85391048 -91583092 + (GAAAA)n Simple_repeat Simple_repeat 4 112 0 1695 207 149 33 chrX 85391048 85391570 -91582570 + L1ME1 LINE L1 5552 6134 -32 4209 78 4 0 chrX 85391587 85392127 -91582013 + MER41A LTR ERV1 1 542 -12 1748 157 11 3 chrX 85392127 85392413 -91581727 - AluJb SINE Alu -24 288 1 259 350 33 42 chrX 85393543 85393663 -91580477 + L2 LINE L2 3137 3255 -17 2597 55 0 0 chrX 85394638 85394945 -91579195 - AluSg1 SINE Alu -2 307 1 291 244 0 0 chrX 85395054 85395132 -91579008 + CT-rich Low_complexity Low_complexity 1 78 0 202 229 66 16 chrX 85396353 85396414 -91577726 + L3 LINE CR1 1232 1295 -282 273 248 112 29 chrX 85397611 85397729 -91576411 + MIR SINE MIR 37 160 -66 433 307 7 22 chrX 85398088 85398225 -91575915 + MIR SINE MIR 30 164 -98 878 217 11 5 chrX 85398761 85398945 -91575195 + MLT1B LTR MaLR 206 390 0 260 302 16 0 chrX 85398952 85399015 -91575125 + MIR3 SINE MIR 98 161 -47 1134 92 0 46 chrX 85399397 85399570 -91574570 + MER30 DNA MER1_type 1 165 -65 3785 190 87 12 chrX 85399578 85401211 -91572929 + L1PBa LINE L1 6 1906 -4957 2243 108 0 0 chrX 85404579 85404884 -91569256 - AluSx SINE Alu -7 305 1 21 0 0 0 chrX 85405001 85405022 -91569118 + AT_rich Low_complexity Low_complexity 1 21 0 375 131 0 0 chrX 85405028 85405089 -91569051 - L1MB7 LINE L1 -19 6165 6105 21 89 0 0 chrX 85405894 85405950 -91568190 + AT_rich Low_complexity Low_complexity 1 56 0 2356 86 0 6 chrX 85407058 85407372 -91566768 + AluSx SINE Alu 1 312 0 237 284 0 27 chrX 85407372 85407446 -91566694 + GA-rich Low_complexity Low_complexity 1 72 0 723 291 69 12 chrX 85408135 85408382 -91565758 - MIR SINE MIR 0 262 2 203 284 104 0 chrX 85408842 85408909 -91565231 + MIR SINE MIR 77 150 -112 2420 86 0 0 chrX 85409131 85409435 -91564705 - AluY SINE Alu -6 305 2 230 298 42 85 chrX 85410639 85410710 -91563430 + MIR SINE MIR 12 84 -178 1764 161 0 10 chrX 85410710 85411001 -91563139 - AluJb SINE Alu -24 288 1 230 298 42 85 chrX 85411001 85411185 -91562955 + MIR SINE MIR 84 262 0 405 91 0 0 chrX 85412870 85412925 -91561215 + Alu SINE Alu 1 55 -255 213 121 0 0 chrX 85412943 85412976 -91561164 + (A)n Simple_repeat Simple_repeat 1 33 0 2236 113 0 0 chrX 85413193 85413484 -91560656 - AluSg SINE Alu -17 293 3 1790 157 23 0 chrX 85414982 85415282 -91558858 - AluJb SINE Alu -5 307 1 1398 174 49 19 chrX 85415457 85415722 -91558418 + AluJo SINE Alu 1 273 -39 758 334 70 74 chrX 85415935 85416631 -91557509 - L2 LINE L2 -75 3197 2508 201 394 59 0 chrX 85416648 85416818 -91557322 - L2 LINE L2 -1433 1881 1702 649 286 29 53 chrX 85417064 85417186 -91556954 + MIR SINE MIR 8 123 -139 2322 82 0 0 chrX 85417186 85417479 -91556661 - AluSx SINE Alu -18 294 2 649 286 29 53 chrX 85417479 85417601 -91556539 + MIR SINE MIR 123 246 -16 1664 49 5 0 chrX 85420757 85420960 -91553180 - AluY SINE Alu -14 297 94 774 225 0 7 chrX 85421259 85421410 -91552730 + MLT1A1 LTR MaLR 4 153 -212 1506 63 0 0 chrX 85421413 85421587 -91552553 + AluSp SINE Alu 1 174 -139 1551 198 25 8 chrX 85421593 85421952 -91552188 + L1MB4 LINE L1 5815 6179 -1 34 42 0 0 chrX 85424604 85424652 -91549488 + AT_rich Low_complexity Low_complexity 1 48 0 2677 42 0 0 chrX 85424722 85425033 -91549107 + AluY SINE Alu 1 311 0 192 377 0 0 chrX 85425283 85425352 -91548788 - L2 LINE L2 0 3272 3204 275 314 126 36 chrX 85425839 85426228 -91547912 + L2 LINE L2 2166 2589 -725 1402 128 26 35 chrX 85426656 85426883 -91547257 + LTR28 LTR ERV1 1 225 -795 213 121 0 0 chrX 85426897 85426930 -91547210 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 1688 189 13 10 chrX 85426934 85427235 -91546905 - AluJb SINE Alu -10 302 1 308 252 32 32 chrX 85427799 85427922 -91546218 + L1MEd LINE L1 414 536 -5994 361 303 48 3 chrX 85428359 85428568 -91545572 + L1MEd LINE L1 1763 1994 -4551 923 227 60 24 chrX 85428591 85428842 -91545298 + AluJo SINE Alu 29 288 -24 32 0 0 0 chrX 85428842 85428874 -91545266 + AT_rich Low_complexity Low_complexity 1 32 0 834 128 0 8 chrX 85429011 85429136 -91545004 + AluJb SINE Alu 181 304 -8 186 171 0 0 chrX 85429517 85429552 -91544588 - L3b LINE CR1 -288 1295 1261 324 0 0 0 chrX 85429803 85429839 -91544301 + (A)n Simple_repeat Simple_repeat 1 36 0 2337 82 0 3 chrX 85430110 85430413 -91543727 + AluY SINE Alu 1 302 -9 221 258 152 66 chrX 85432464 85432615 -91541525 - MIR SINE MIR -50 212 49 216 337 53 63 chrX 85433349 85433444 -91540696 + MIR3 SINE MIR 108 201 -7 2370 138 83 19 chrX 85433467 85433939 -91540201 - L1MA8 LINE L1 -5 6286 5785 1969 110 29 0 chrX 85434421 85434722 -91539418 + AluSx SINE Alu 1 309 0 565 299 98 15 chrX 85435770 85435974 -91538166 - MIR SINE MIR -11 251 31 871 194 26 62 chrX 85436455 85436682 -91537458 + MER20 DNA MER1_type 1 219 0 236 234 47 0 chrX 85436895 85436959 -91537181 + (TTATA)n Simple_repeat Simple_repeat 1 67 0 2022 112 0 40 chrX 85437477 85437800 -91536340 - AluSx SINE Alu 0 311 1 2267 46 64 0 chrX 85438014 85438296 -91535844 - AluY SINE Alu -11 300 1 2365 80 3 3 chrX 85438298 85438600 -91535540 - AluSq SINE Alu -11 302 1 403 354 101 13 chrX 85439304 85439462 -91534678 + L3b LINE CR1 1376 1547 -36 515 192 6 26 chrX 85439837 85439993 -91534147 + GA-rich Low_complexity Low_complexity 4 156 0 185 0 40 0 chrX 85440005 85440030 -91534110 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 85440692 85440715 -91533425 + AT_rich Low_complexity Low_complexity 1 23 0 1636 192 44 0 chrX 85441399 85441784 -91532356 - Charlie4a DNA MER1_type -90 418 17 21 82 0 0 chrX 85442343 85442392 -91531748 + AT_rich Low_complexity Low_complexity 1 49 0 1996 121 0 7 chrX 85443573 85443888 -91530252 - AluSc SINE Alu 0 313 1 181 356 34 0 chrX 85444124 85444183 -91529957 - MIR SINE MIR -58 150 90 607 179 137 90 chrX 85444203 85444415 -91529725 + MIR SINE MIR 31 252 -10 299 336 22 29 chrX 85444482 85444619 -91529521 + MIR SINE MIR 86 221 -41 212 311 33 0 chrX 85444653 85444714 -91529426 - MIR SINE MIR -172 90 28 2308 92 10 0 chrX 85445706 85446012 -91528128 - AluSq SINE Alu -3 310 2 22 35 0 0 chrX 85448746 85448775 -91525365 + AT_rich Low_complexity Low_complexity 1 29 0 247 282 115 0 chrX 85450485 85450563 -91523577 - L2 LINE L2 0 3272 3186 2175 82 3 3 chrX 85450898 85451180 -91522960 + AluSq SINE Alu 24 305 -8 258 294 87 0 chrX 85451837 85451929 -91522211 - MIR SINE MIR -75 187 88 715 293 104 29 chrX 85451929 85452478 -91521662 + L1ME3A LINE L1 5365 5954 -216 7006 127 56 4 chrX 85453615 85454775 -91519365 - Tigger3b DNA MER2_type -10 1221 2 255 241 56 65 chrX 85456015 85456091 -91518049 + MIR SINE MIR 150 226 -36 1066 239 9 0 chrX 85456091 85456309 -91517831 - MER58A DNA MER1_type -4 220 1 255 241 56 65 chrX 85456309 85456340 -91517800 + MIR SINE MIR 226 256 -6 21 0 0 0 chrX 85456643 85456664 -91517476 + AT_rich Low_complexity Low_complexity 1 21 0 2240 103 3 3 chrX 85457077 85457387 -91516753 - AluSq SINE Alu -3 310 1 294 182 27 109 chrX 85457662 85457772 -91516368 + MER5B DNA MER1_type 72 172 -6 2286 94 0 23 chrX 85458302 85458611 -91515529 - AluSg SINE Alu -8 302 1 224 233 0 0 chrX 85459123 85459166 -91514974 + (TG)n Simple_repeat Simple_repeat 2 44 0 2245 150 20 54 chrX 85460238 85460686 -91513454 + Tigger2a DNA MER2_type 1 433 -1 220 393 0 0 chrX 85461077 85461166 -91512974 + L2 LINE L2 2970 3058 -214 231 326 92 43 chrX 85461496 85461821 -91512319 - L2 LINE L2 -1211 2103 1763 255 306 152 12 chrX 85463124 85463282 -91510858 - MIR SINE MIR -67 141 16 318 343 126 21 chrX 85464310 85464698 -91509442 + L2 LINE L2 1990 2418 -896 571 147 164 26 chrX 85464922 85465038 -91509102 + FLAM_C SINE Alu 2 133 0 294 29 0 0 chrX 85465093 85465128 -91509012 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 463 330 91 86 chrX 85465456 85465850 -91508290 + L2 LINE L2 2869 3264 -8 808 300 85 55 chrX 85466708 85467358 -91506782 + L1MEd LINE L1 4 672 -5447 203 330 43 43 chrX 85468060 85468175 -91505965 + L2 LINE L2 3199 3313 0 195 191 21 43 chrX 85470222 85470269 -91503871 + L2 LINE L2 3251 3296 -17 32 26 0 0 chrX 85470903 85470942 -91503198 + AT_rich Low_complexity Low_complexity 1 39 0 1544 259 177 32 chrX 85471098 85471871 -91502269 + L1MC4 LINE L1 6743 7627 -415 269 312 11 11 chrX 85471872 85471965 -91502175 + GA-rich Low_complexity Low_complexity 3 95 0 265 158 24 98 chrX 85471986 85472068 -91502072 + L1MC4 LINE L1 7966 8041 -1 251 317 49 0 chrX 85472346 85472428 -91501712 - MIR3 SINE MIR -6 202 117 243 0 0 0 chrX 85472568 85472595 -91501545 + (A)n Simple_repeat Simple_repeat 1 27 0 34 0 0 0 chrX 85472650 85472684 -91501456 + AT_rich Low_complexity Low_complexity 1 34 0 2243 299 162 36 chrX 85472951 85473981 -91500159 + L2 LINE L2 546 1445 -1869 1950 120 16 26 chrX 85473981 85474289 -91499851 + AluSx SINE Alu 1 305 -7 2243 299 162 36 chrX 85474289 85475040 -91499100 + L2 LINE L2 1445 2552 -762 1338 288 111 30 chrX 85475048 85475704 -91498436 - L2 LINE L2 -1227 2087 1379 423 308 151 0 chrX 85477992 85478164 -91495976 - MIR SINE MIR -50 212 15 1053 173 42 8 chrX 85479094 85479331 -91494809 + L1MC2 LINE L1 6087 6331 -13 189 74 0 0 chrX 85479393 85479420 -91494720 + (TTA)n Simple_repeat Simple_repeat 1 27 0 201 315 96 0 chrX 85480229 85480302 -91493838 + MIR3 SINE MIR 111 190 -18 21 36 0 0 chrX 85480829 85480857 -91493283 + AT_rich Low_complexity Low_complexity 1 28 0 404 286 95 41 chrX 85480887 85481287 -91492853 + L1ME4a LINE L1 5317 5634 -487 1306 122 10 7 chrX 85481290 85481516 -91492624 + L1PB3 LINE L1 5270 5491 -663 581 95 0 0 chrX 85481516 85481600 -91492540 + AluSg/x SINE Alu 211 294 -15 4065 144 10 10 chrX 85481600 85482278 -91491862 + L1PB3 LINE L1 5476 6153 -1 265 236 138 16 chrX 85482285 85482408 -91491732 + L1ME4a LINE L1 5770 5907 -214 483 330 5 39 chrX 85483039 85483242 -91490898 + MIR SINE MIR 51 246 -16 25 0 0 0 chrX 85483847 85483872 -91490268 + AT_rich Low_complexity Low_complexity 1 25 0 1287 171 0 0 chrX 85484204 85484409 -91489731 - AluJo SINE Alu -105 207 3 531 318 42 95 chrX 85487843 85488550 -91485590 + L2 LINE L2 2598 3262 -10 880 188 90 16 chrX 85490239 85490484 -91483656 + L1MB7 LINE L1 4695 4957 -1189 3843 169 61 26 chrX 85490485 85490730 -91483410 + L1MB7 LINE L1 5022 5257 -927 1833 139 0 7 chrX 85490730 85491004 -91483136 + AluJb SINE Alu 41 312 0 3843 169 61 26 chrX 85491004 85491715 -91482425 + L1MB7 LINE L1 5257 6036 -148 249 57 0 0 chrX 85494444 85494479 -91479661 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2363 45 0 3 chrX 85494481 85494768 -91479372 - AluY SINE Alu -25 286 1 2122 116 3 0 chrX 85494775 85495069 -91479071 - AluSx SINE Alu -17 295 1 946 248 43 13 chrX 85496542 85496776 -91477364 + MIR SINE MIR 22 262 0 1779 167 18 0 chrX 85497089 85497365 -91476775 - AluJo SINE Alu -30 282 2 22 35 0 0 chrX 85497418 85497447 -91476693 + AT_rich Low_complexity Low_complexity 1 29 0 427 263 56 12 chrX 85497887 85498049 -91476091 - MIR SINE MIR -62 146 28 213 386 53 9 chrX 85498207 85498321 -91475819 + L2 LINE L2 3147 3265 -7 30 69 0 0 chrX 85498464 85498522 -91475618 + AT_rich Low_complexity Low_complexity 1 58 0 1750 156 3 3 chrX 85498650 85498939 -91475201 + AluJb SINE Alu 11 299 -13 2773 181 49 6 chrX 85499218 85499744 -91474396 + MER44D DNA MER2_type 2 605 0 210 231 0 0 chrX 85499804 85499843 -91474297 + (CA)n Simple_repeat Simple_repeat 2 40 0 2860 161 139 27 chrX 85500857 85501526 -91472614 + L1MC2 LINE L1 5592 6335 -9 616 81 0 0 chrX 85504331 85504418 -91469722 - AluSg/x SINE Alu -11 298 212 21 36 0 0 chrX 85505063 85505091 -91469049 + AT_rich Low_complexity Low_complexity 1 28 0 666 269 74 16 chrX 85505228 85505470 -91468670 - MIR SINE MIR 0 262 7 705 277 51 30 chrX 85507656 85507891 -91466249 + MIR SINE MIR 22 261 -1 261 310 60 99 chrX 85508147 85508218 -91465922 + L2 LINE L2 2932 3004 -268 2102 124 0 13 chrX 85508218 85508532 -91465608 - AluSx SINE Alu -2 310 1 261 310 60 99 chrX 85508532 85508812 -91465328 + L2 LINE L2 3004 3269 -3 21011 187 67 20 chrX 85509570 85512076 -91462064 + L1MA3 LINE L1 13 2398 -5326 2505 84 0 0 chrX 85512076 85512387 -91461753 + AluY SINE Alu 1 311 0 21011 187 67 20 chrX 85512387 85514303 -91459837 + L1MA3 LINE L1 2398 4221 -3503 2370 74 0 3 chrX 85514303 85514599 -91459541 + AluY SINE Alu 5 299 -12 21011 187 67 20 chrX 85514599 85517489 -91456651 + L1MA3 LINE L1 4221 7723 -1 195 42 0 0 chrX 85517826 85517850 -91456290 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 85518374 85518397 -91455743 + AT_rich Low_complexity Low_complexity 1 23 0 2134 96 0 11 chrX 85518464 85518773 -91455367 - AluSg SINE Alu 0 308 3 288 0 0 0 chrX 85519485 85519517 -91454623 + (TG)n Simple_repeat Simple_repeat 2 33 0 567 218 0 0 chrX 85519532 85519633 -91454507 - FLAM_A SINE Alu -27 115 15 2527 121 3 6 chrX 85520046 85520411 -91453729 - THE1B LTR MaLR 0 364 1 2198 69 52 0 chrX 85520617 85520905 -91453235 - AluY SINE Alu -8 303 1 210 314 93 0 chrX 85520907 85521005 -91453135 + MIR SINE MIR 54 160 -48 742 283 78 5 chrX 85521199 85521404 -91452736 - MIR SINE MIR -27 235 16 21 0 0 0 chrX 85524541 85524562 -91449578 + AT_rich Low_complexity Low_complexity 1 21 0 889 335 94 55 chrX 85524835 85525183 -91448957 + L2 LINE L2 1831 2164 -1150 2340 113 13 26 chrX 85525183 85525563 -91448577 + THE1C LTR MaLR 1 375 0 889 335 94 55 chrX 85525563 85526204 -91447936 + L2 LINE L2 2164 2859 -455 1968 142 152 8 chrX 85526433 85526807 -91447333 + MSTA LTR MaLR 1 428 0 21 57 0 0 chrX 85528563 85528598 -91445542 + AT_rich Low_complexity Low_complexity 1 35 0 812 249 0 52 chrX 85528608 85528720 -91445420 + MIR SINE MIR 40 137 -125 2271 100 0 10 chrX 85528720 85529019 -91445121 + AluSp SINE Alu 1 296 -17 812 249 0 52 chrX 85529019 85529119 -91445021 + MIR SINE MIR 137 241 -21 564 152 0 9 chrX 85529451 85529556 -91444584 + L1MA4 LINE L1 6196 6299 -1 477 358 67 0 chrX 85529690 85529855 -91444285 - MER91A DNA MER1_type -2 194 19 206 313 10 52 chrX 85531658 85531754 -91442386 + L2 LINE L2 2436 2527 -787 335 335 89 37 chrX 85531776 85532045 -91442095 + L2 LINE L2 3014 3296 -17 240 250 36 0 chrX 85532745 85532801 -91441339 + L2 LINE L2 3256 3313 0 468 331 29 47 chrX 85535088 85535305 -91438835 + MIR SINE MIR 38 249 -13 278 300 0 0 chrX 85536741 85536801 -91437339 + tRNA-Ile-ATT tRNA tRNA 1 60 -17 418 311 7 0 chrX 85538481 85538616 -91435524 + MIR SINE MIR 117 252 -10 1715 166 3 42 chrX 85538951 85539259 -91434881 - AluJb SINE Alu -16 296 1 204 154 26 0 chrX 85539420 85539459 -91434681 + (CATATA)n Simple_repeat Simple_repeat 1 40 0 2016 226 87 68 chrX 85539492 85540243 -91433897 + LTR1B LTR ERV1 1 765 -61 227 363 80 9 chrX 85540445 85540558 -91433582 - L2 LINE L2 -36 3236 3116 203 293 0 0 chrX 85540821 85540879 -91433261 - L2 LINE L2 -659 2655 2598 1115 228 95 120 chrX 85540916 85541464 -91432676 + MLT1E LTR MaLR 1 580 -8 37 0 0 0 chrX 85541464 85541501 -91432639 + AT_rich Low_complexity Low_complexity 1 37 0 213 39 0 0 chrX 85541763 85541789 -91432351 + (TAA)n Simple_repeat Simple_repeat 1 26 0 2232 123 0 0 chrX 85542154 85542456 -91431684 + AluSx SINE Alu 1 302 -10 463 307 164 0 chrX 85543078 85543303 -91430837 + MIR SINE MIR 1 262 0 758 171 0 0 chrX 85543716 85543833 -91430307 + AluJb SINE Alu 1 117 -195 701 73 0 0 chrX 85543828 85543924 -91430216 - AluY SINE Alu -8 303 208 * 1070 174 0 6 chrX 85543924 85544096 -91430044 + AluJb SINE Alu 100 270 -42 393 75 0 0 chrX 85544103 85544156 -91429984 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1878 199 8 0 chrX 85544181 85544543 -91429597 + MLT1A1 LTR MaLR 1 365 0 902 229 52 58 chrX 85546073 85546143 -91427997 + MER2 DNA MER2_type 2 71 -273 2517 65 3 0 chrX 85546143 85546449 -91427691 + AluSp SINE Alu 1 307 -6 902 229 52 58 chrX 85546449 85546629 -91427511 + MER2 DNA MER2_type 71 252 -92 1711 181 34 10 chrX 85546629 85546921 -91427219 - AluJb SINE Alu -12 300 2 902 229 52 58 chrX 85546921 85547014 -91427126 + MER2 DNA MER2_type 252 344 0 21 36 0 0 chrX 85548298 85548326 -91425814 + AT_rich Low_complexity Low_complexity 1 28 0 280 277 0 0 chrX 85548852 85548917 -91425223 + L2 LINE L2 2992 3056 -216 185 362 184 7 chrX 85549172 85549476 -91424664 - L2 LINE L2 -597 2717 2360 820 285 36 0 chrX 85549519 85549768 -91424372 + MIR SINE MIR 5 262 0 248 273 30 0 chrX 85549890 85549956 -91424184 + (TATG)n Simple_repeat Simple_repeat 3 70 0 359 313 80 20 chrX 85551142 85551292 -91422848 + MIR SINE MIR 27 185 -77 1754 129 20 8 chrX 85551599 85551892 -91422248 + AluSx SINE Alu 24 319 0 229 380 65 0 chrX 85552284 85552392 -91421748 + L2 LINE L2 3138 3252 -20 22 35 0 0 chrX 85552445 85552474 -91421666 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chrX 85552521 85552552 -91421588 + AT_rich Low_complexity Low_complexity 1 31 0 369 75 0 0 chrX 85553415 85553468 -91420672 + (CA)n Simple_repeat Simple_repeat 2 54 0 327 244 87 35 chrX 85553495 85553610 -91420530 - MIR SINE MIR -41 221 101 312 321 9 18 chrX 85553693 85553802 -91420338 + MIR3 SINE MIR 101 208 0 9477 191 19 21 chrX 85553915 85554508 -91419632 + L1PA16 LINE L1 2915 3508 -2658 234 0 0 0 chrX 85554508 85554534 -91419606 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 9477 191 19 21 chrX 85554534 85556366 -91417774 + L1PA16 LINE L1 3508 5342 -824 2237 104 0 0 chrX 85556366 85556686 -91417454 + AluSq SINE Alu 1 313 0 9477 191 19 21 chrX 85556686 85557168 -91416972 + L1PA16 LINE L1 5342 5828 -338 2211 98 10 0 chrX 85557168 85557450 -91416690 + AluSq SINE Alu 1 288 -25 375 78 0 0 chrX 85557450 85557501 -91416639 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 2211 98 10 0 chrX 85557501 85557515 -91416625 + AluSq SINE Alu 288 300 -13 9477 191 19 21 chrX 85557515 85557845 -91416295 + L1PA16 LINE L1 5828 6157 -9 536 338 103 14 chrX 85557967 85558337 -91415803 + L1MC4 LINE L1 5495 5897 -1911 21 0 0 0 chrX 85559652 85559673 -91414467 + AT_rich Low_complexity Low_complexity 1 21 0 750 228 93 33 chrX 85560198 85560413 -91413727 - MIR SINE MIR -23 239 12 2645 218 37 14 chrX 85561078 85561703 -91412437 + L1MA4A LINE L1 1 639 -6570 2586 164 30 13 chrX 85561700 85562371 -91411769 + L1MA4A LINE L1 2776 3465 -3743 * 241 156 0 0 chrX 85562362 85562426 -91411714 + L1MC4 LINE L1 6640 6703 -1339 * 317 314 0 0 chrX 85562426 85562512 -91411628 - L1MC4 LINE L1 -1343 6699 6614 * 345 192 128 0 chrX 85562435 85562513 -91411627 + L1MC4 LINE L1 6615 6702 -1340 966 116 0 0 chrX 85562613 85562760 -91411380 + (TA)n Simple_repeat Simple_repeat 2 148 0 9226 192 33 22 chrX 85562761 85566312 -91407828 + L1MA4A LINE L1 3471 7086 -279 7881 123 9 4 chrX 85566413 85567543 -91406597 + THE1C-int LTR MaLR 446 1580 0 2086 124 68 8 chrX 85567543 85567897 -91406243 + THE1C LTR MaLR 1 375 0 357 238 0 119 chrX 85568181 85568324 -91405816 - MIR SINE MIR -56 206 81 1448 197 29 0 chrX 85569846 85570120 -91404020 - AluJo SINE Alu -30 282 1 2199 74 7 3 chrX 85570196 85570507 -91403633 - AluSq SINE Alu 0 312 1 23 33 0 0 chrX 85570777 85570807 -91403333 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chrX 85571092 85571135 -91403005 + AT_rich Low_complexity Low_complexity 1 43 0 392 145 13 40 chrX 85571344 85571420 -91402720 + FRAM/FAM SINE Alu 14 87 -79 195 231 194 56 chrX 85571485 85571593 -91402547 - L2 LINE L2 -44 3228 3106 474 229 65 0 chrX 85571818 85571971 -91402169 + MER103 DNA DNA 2 164 -2 206 143 0 0 chrX 85573022 85573057 -91401083 - L2 LINE L2 -6 3307 3273 2215 80 0 52 chrX 85573075 85573399 -91400741 - AluY SINE Alu -4 307 1 22 0 0 0 chrX 85574225 85574247 -91399893 + AT_rich Low_complexity Low_complexity 1 22 0 2155 102 3 3 chrX 85574259 85574544 -91399596 - AluSx SINE Alu -27 285 1 490 278 98 39 chrX 85575007 85575262 -91398878 - MARNA DNA Mariner -80 506 237 200 208 104 21 chrX 85575378 85575426 -91398714 + L2 LINE L2 1363 1414 -1900 631 312 11 21 chrX 85575668 85575854 -91398286 - MIR3 SINE MIR 0 208 25 23 33 0 0 chrX 85577436 85577466 -91396674 + AT_rich Low_complexity Low_complexity 1 30 0 1655 220 39 68 chrX 85577823 85578383 -91395757 + L1ME1 LINE L1 5618 6161 -5 180 0 0 0 chrX 85578387 85578407 -91395733 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 305 311 113 26 chrX 85578409 85578560 -91395580 - L2 LINE L2 -445 2869 2706 292 272 3 0 chrX 85578784 85578863 -91395277 - MIR SINE MIR -66 142 70 787 221 153 13 chrX 85579305 85579612 -91394528 + L1ME4a LINE L1 5547 5896 -225 235 376 98 26 chrX 85579848 85580114 -91394026 + L3b LINE CR1 1291 1575 -8 2563 20 3 0 chrX 85582776 85583070 -91391070 + AluY SINE Alu 1 295 -16 347 300 0 0 chrX 85583227 85583317 -91390823 - L1MC4 LINE L1 -1339 6703 6614 200 350 153 30 chrX 85584508 85584711 -91389429 - L2 LINE L2 -2 3270 3043 21 36 0 0 chrX 85587175 85587203 -91386937 + AT_rich Low_complexity Low_complexity 1 28 0 855 190 87 15 chrX 85587219 85587414 -91386726 - MER6B DNA MER2_type -1 209 1 218 213 0 0 chrX 85587414 85587461 -91386679 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 29 0 0 chrX 85588177 85588211 -91385929 + AT_rich Low_complexity Low_complexity 1 34 0 2054 90 0 47 chrX 85588823 85589123 -91385017 + AluSc SINE Alu 19 304 -5 308 253 44 33 chrX 85589126 85589217 -91384923 - L1MC4 LINE L1 -1337 6705 6614 1151 164 11 0 chrX 85589219 85589472 -91384668 + AluJb SINE Alu 127 381 0 1580 158 22 9 chrX 85589764 85590080 -91384060 + L1MA4 LINE L1 5977 6296 -4 28 29 0 0 chrX 85590080 85590115 -91384025 + AT_rich Low_complexity Low_complexity 1 35 0 189 107 0 0 chrX 85591054 85591082 -91383058 + (CA)n Simple_repeat Simple_repeat 1 28 0 557 291 31 53 chrX 85592307 85592544 -91381596 + MIR SINE MIR 19 251 -11 1148 125 14 19 chrX 85593402 85593610 -91380530 - L1MA8 LINE L1 -53 6238 6032 496 285 12 42 chrX 85596985 85597150 -91376990 - MIR SINE MIR -26 236 77 840 199 118 0 chrX 85597621 85597807 -91376333 - MER3 DNA MER1_type 0 209 2 180 0 0 0 chrX 85597996 85598016 -91376124 + (A)n Simple_repeat Simple_repeat 1 20 0 513 331 28 17 chrX 85598038 85598219 -91375921 - MIR3 SINE MIR -9 199 17 21 0 0 0 chrX 85598892 85598913 -91375227 + AT_rich Low_complexity Low_complexity 1 21 0 2033 122 189 0 chrX 85600350 85600710 -91373430 + MSTA LTR MaLR 1 428 0 477 282 69 8 chrX 85602291 85602422 -91371718 - MIR3 SINE MIR -68 140 2 613 204 132 7 chrX 85604040 85604192 -91369948 + L1PA10 LINE L1 5997 6167 -1 21 71 0 0 chrX 85604537 85604579 -91369561 + AT_rich Low_complexity Low_complexity 1 42 0 292 346 67 54 chrX 85604616 85604931 -91369209 + L2 LINE L2 2185 2503 -811 * 977 275 119 38 chrX 85604929 85605373 -91368767 - L2 LINE L2 0 3313 2834 23 0 0 0 chrX 85606141 85606164 -91367976 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 85606644 85606681 -91367459 + AT_rich Low_complexity Low_complexity 1 37 0 918 210 22 0 chrX 85607595 85607776 -91366364 + MER5A DNA MER1_type 5 189 0 2404 59 0 3 chrX 85607920 85608227 -91365913 + AluY SINE Alu 1 306 -5 2640 203 127 6 chrX 85608561 85609193 -91364947 - L1ME1 LINE L1 -3 6163 5456 401 302 24 24 chrX 85609199 85609325 -91364815 - MIR SINE MIR -123 139 14 591 332 18 14 chrX 85610116 85610333 -91363807 + MIR SINE MIR 6 223 -39 24 0 0 0 chrX 85610474 85610498 -91363642 + AT_rich Low_complexity Low_complexity 1 24 0 412 217 22 22 chrX 85610545 85610637 -91363503 + FRAM/FAM SINE Alu 1 84 -92 2323 61 7 0 chrX 85610677 85610971 -91363169 - AluY SINE Alu -15 296 1 22 0 0 0 chrX 85614012 85614034 -91360106 + AT_rich Low_complexity Low_complexity 1 22 0 868 132 24 12 chrX 85614141 85614308 -91359832 - L1MA8 LINE L1 0 6291 6123 9171 200 25 26 chrX 85614310 85614985 -91359155 + L1 LINE L1 2421 3095 -3051 2150 96 33 10 chrX 85614985 85615286 -91358854 + AluSx SINE Alu 1 308 -4 9171 200 25 26 chrX 85615286 85616761 -91357379 + L1 LINE L1 3095 4568 -1578 13203 25 0 1 chrX 85616762 85619093 -91355047 + L1PA3 LINE L1 3822 6152 -3 31 26 0 0 chrX 85619093 85619131 -91355009 + AT_rich Low_complexity Low_complexity 1 38 0 1009 101 6 25 chrX 85619477 85619636 -91354504 + L1PB2 LINE L1 5989 6144 -7 853 123 0 0 chrX 85619654 85619784 -91354356 - L1MA8 LINE L1 -152 6139 6010 264 348 116 0 chrX 85620329 85620441 -91353699 - MIR SINE MIR -62 146 22 2119 108 0 46 chrX 85621518 85621843 -91352297 + AluSx SINE Alu 3 312 0 26 0 0 0 chrX 85626178 85626204 -91347936 + AT_rich Low_complexity Low_complexity 1 26 0 268 207 215 25 chrX 85626535 85626656 -91347484 - MIR3 SINE MIR -5 203 60 432 113 14 14 chrX 85626669 85626740 -91347400 - MER52A LTR ERV1 0 1755 1685 671 285 172 7 chrX 85626766 85627124 -91347016 + L2 LINE L2 2683 3101 -212 480 269 135 39 chrX 85627905 85628113 -91346027 + MIR SINE MIR 13 240 -22 199 137 20 20 chrX 85628126 85628177 -91345963 + (TA)n Simple_repeat Simple_repeat 1 51 0 348 290 0 0 chrX 85628177 85628270 -91345870 - L1MC4 LINE L1 -1336 6706 6614 293 188 12 0 chrX 85628270 85628350 -91345790 + (TA)n Simple_repeat Simple_repeat 2 82 0 198 240 160 96 chrX 85628378 85628461 -91345679 - L2 LINE L2 -958 2356 2261 2208 102 10 0 chrX 85628461 85628764 -91345376 + AluSq SINE Alu 1 306 -7 198 240 160 96 chrX 85628764 85628805 -91345335 - L2 LINE L2 -1053 2261 2224 416 104 15 0 chrX 85628809 85628876 -91345264 + (CA)n Simple_repeat Simple_repeat 1 68 0 229 209 0 0 chrX 85628885 85628928 -91345212 + MIR SINE MIR 210 252 -10 27 87 0 0 chrX 85630475 85630544 -91343596 + AT_rich Low_complexity Low_complexity 1 69 0 234 62 0 0 chrX 85631344 85631376 -91342764 + (T)n Simple_repeat Simple_repeat 1 32 0 252 154 0 0 chrX 85632809 85632848 -91341292 + tRNA-Thr-ACT tRNA tRNA 2 40 -37 2293 103 3 0 chrX 85633139 85633451 -91340689 + AluSq SINE Alu 1 313 0 1917 136 0 7 chrX 85633821 85634123 -91340017 - AluJb SINE Alu -12 300 1 24 67 0 0 chrX 85634135 85634180 -91339960 + AT_rich Low_complexity Low_complexity 1 45 0 2247 113 0 0 chrX 85634449 85634750 -91339390 + AluSg SINE Alu 1 301 -9 26 0 0 0 chrX 85634776 85634802 -91339338 + AT_rich Low_complexity Low_complexity 1 26 0 1948 121 4 0 chrX 85636768 85637049 -91337091 + AluSx SINE Alu 1 282 -30 25 0 0 0 chrX 85637384 85637409 -91336731 + AT_rich Low_complexity Low_complexity 1 25 0 626 269 209 24 chrX 85637453 85637784 -91336356 + L2 LINE L2 2922 3313 0 204 97 0 0 chrX 85637784 85637815 -91336325 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 323 325 150 6 chrX 85638341 85638501 -91335639 - MIR3 SINE MIR -10 198 16 45 34 0 0 chrX 85639800 85639859 -91334281 + AT_rich Low_complexity Low_complexity 1 59 0 7350 40 13 0 chrX 85639877 85641022 -91333118 - L1PA5 LINE L1 -3 6151 5002 2087 139 25 3 chrX 85641527 85641880 -91332260 - MER46B DNA MER2_type 0 236 1 1207 190 102 30 chrX 85642553 85642885 -91331255 + Charlie4a DNA MER1_type 1 356 -152 1348 139 71 177 chrX 85642890 85643371 -91330769 - L1MD2 LINE L1 -20 6339 5910 * 6183 99 73 20 chrX 85643356 85644003 -91330137 + L1MA3 LINE L1 5135 5872 -433 2318 100 0 6 chrX 85644003 85644314 -91329826 + AluSx SINE Alu 1 309 -3 6183 99 73 20 chrX 85644314 85644765 -91329375 + L1MA3 LINE L1 5872 6298 -7 1397 207 18 7 chrX 85644766 85645051 -91329089 - L1MD2 LINE L1 -424 5935 5648 697 199 20 0 chrX 85645073 85645219 -91328921 + Charlie4a DNA MER1_type 359 507 -1 2538 49 0 7 chrX 85645302 85645608 -91328532 - AluY SINE Alu -5 306 3 2163 74 0 50 chrX 85646242 85646541 -91327599 + AluY SINE Alu 21 304 -7 245 302 66 38 chrX 85646624 85646730 -91327410 - MIR SINE MIR -108 154 46 558 242 59 43 chrX 85646849 85647035 -91327105 + MIR SINE MIR 73 261 -1 259 330 52 10 chrX 85647098 85647195 -91326945 + L3 LINE CR1 1421 1521 -56 456 51 0 0 chrX 85647197 85647256 -91326884 + (TAG)n Simple_repeat Simple_repeat 1 59 0 1981 80 0 0 chrX 85647265 85647516 -91326624 - AluSg SINE Alu -59 251 1 22 56 0 0 chrX 85648793 85648829 -91325311 + AT_rich Low_complexity Low_complexity 1 36 0 2183 89 0 3 chrX 85649278 85649588 -91324552 + AluSx SINE Alu 1 309 0 322 317 186 32 chrX 85650722 85650943 -91323197 + MIR SINE MIR 2 256 -6 460 269 115 19 chrX 85650964 85651172 -91322968 - MIR SINE MIR 0 262 35 455 327 56 29 chrX 85651169 85651451 -91322689 + L2 LINE L2 2782 3077 -236 * 786 71 102 8 chrX 85651458 85651585 -91322555 - MER85 DNA T2_type 0 139 1 243 310 142 19 chrX 85651854 85652009 -91322131 - MIR SINE MIR -76 186 13 590 298 45 48 chrX 85652406 85652732 -91321408 + L1ME4a LINE L1 5505 5831 -290 1848 150 0 3 chrX 85652732 85653019 -91321121 - AluJb SINE Alu -26 286 1 590 298 45 48 chrX 85653019 85653111 -91321029 + L1ME4a LINE L1 5831 5922 -199 23 54 0 0 chrX 85653347 85653384 -91320756 + AT_rich Low_complexity Low_complexity 1 37 0 227 312 7 21 chrX 85653442 85653583 -91320557 + A-rich Low_complexity Low_complexity 4 142 0 222 293 219 0 chrX 85654265 85654347 -91319793 - L2 LINE L2 -15 3298 3199 201 357 48 0 chrX 85654424 85654508 -91319632 - L2 LINE L2 0 3272 3185 457 360 94 58 chrX 85654573 85654968 -91319172 - L2 LINE L2 -4 3268 2860 850 322 88 12 chrX 85655092 85655499 -91318641 - L2 LINE L2 -502 2812 2375 241 320 23 76 chrX 85655504 85655676 -91318464 - L3 LINE CR1 -198 1379 1217 312 294 149 38 chrX 85656044 85656279 -91317861 - L1ME LINE L1 -303 5818 5558 2241 82 0 0 chrX 85656861 85657184 -91316956 + AluY SINE Alu 4 326 0 32 0 0 0 chrX 85657693 85657725 -91316415 + AT_rich Low_complexity Low_complexity 1 32 0 215 224 0 20 chrX 85658921 85658970 -91315170 - MIR SINE MIR -50 212 165 2196 104 0 7 chrX 85659742 85660040 -91314100 - AluSx SINE Alu -16 296 1 23 0 0 0 chrX 85660199 85660222 -91313918 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 85660976 85661000 -91313140 + AT_rich Low_complexity Low_complexity 1 24 0 352 314 57 0 chrX 85661027 85661132 -91313008 + L2 LINE L2 2969 3079 -193 213 151 0 0 chrX 85661188 85661241 -91312899 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 57 0 0 chrX 85661318 85661353 -91312787 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chrX 85661692 85661716 -91312424 + AT_rich Low_complexity Low_complexity 1 24 0 1433 219 0 22 chrX 85661880 85662150 -91311990 + Tigger7 DNA MER2_type 1 264 -469 414 0 0 0 chrX 85662152 85662198 -91311942 + (TA)n Simple_repeat Simple_repeat 2 47 0 195 42 0 0 chrX 85662240 85662264 -91311876 + (GA)n Simple_repeat Simple_repeat 2 25 0 586 136 0 11 chrX 85662264 85662352 -91311788 + Tigger7 DNA MER2_type 2405 2491 0 410 283 50 56 chrX 85663670 85663868 -91310272 + MIR SINE MIR 2 198 -64 1814 163 58 0 chrX 85665047 85665372 -91308768 - MER2 DNA MER2_type 0 344 1 1896 152 0 3 chrX 85665394 85665691 -91308449 + AluSx SINE Alu 1 296 -16 899 232 69 8 chrX 85666248 85666494 -91307646 + MIR SINE MIR 2 262 0 2096 126 0 0 chrX 85667331 85667617 -91306523 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrX 85667670 85667691 -91306449 + AT_rich Low_complexity Low_complexity 1 21 0 1601 195 3 7 chrX 85668456 85668748 -91305392 + AluJo SINE Alu 1 291 -21 28 29 0 0 chrX 85668748 85668783 -91305357 + AT_rich Low_complexity Low_complexity 1 35 0 1263 118 11 0 chrX 85668963 85669149 -91304991 + L1PA15 LINE L1 5954 6141 -24 486 309 45 32 chrX 85669201 85669421 -91304719 - MIR SINE MIR -6 256 34 201 361 160 0 chrX 85669464 85669633 -91304507 - L3 LINE CR1 -140 1437 1242 21 0 0 0 chrX 85670011 85670032 -91304108 + AT_rich Low_complexity Low_complexity 1 21 0 2268 99 3 3 chrX 85670350 85670654 -91303486 + AluSq SINE Alu 1 304 -9 2004 110 3 72 chrX 85670694 85671013 -91303127 + AluSx SINE Alu 1 297 -15 23 33 0 0 chrX 85671835 85671865 -91302275 + AT_rich Low_complexity Low_complexity 1 30 0 289 276 161 40 chrX 85672644 85672818 -91301322 + MIR SINE MIR 1 195 -67 909 224 99 23 chrX 85672958 85673247 -91300893 + MER61B LTR ERV1 1 396 -28 2241 139 72 8 chrX 85673398 85673800 -91300340 - MSTA LTR MaLR 0 428 1 462 274 111 26 chrX 85674047 85674237 -91299903 + MIR SINE MIR 30 235 -27 2262 83 206 3 chrX 85674674 85675048 -91299092 + LTR7 LTR ERV1 1 450 0 2460 59 0 16 chrX 85675885 85676192 -91297948 + AluY SINE Alu 1 302 -9 1582 153 52 0 chrX 85676566 85676874 -91297266 + MER33 DNA MER1_type 1 324 0 774 277 78 45 chrX 85678372 85678729 -91295411 + MARNA DNA Mariner 18 386 -200 208 345 68 58 chrX 85678731 85678937 -91295203 + MIR SINE MIR 43 250 -12 297 0 0 0 chrX 85679331 85679364 -91294776 + (CA)n Simple_repeat Simple_repeat 2 34 0 486 161 0 0 chrX 85679364 85679457 -91294683 + GA-rich Low_complexity Low_complexity 1 93 0 2860 7 0 0 chrX 85679774 85680081 -91294059 + AluY SINE Alu 2 308 -3 315 0 0 0 chrX 85680081 85680116 -91294024 + (TA)n Simple_repeat Simple_repeat 2 36 0 409 77 0 39 chrX 85680617 85680695 -91293445 + L1PB1 LINE L1 6077 6151 0 1620 145 0 23 chrX 85680728 85680990 -91293150 + AluJb SINE Alu 43 298 -14 263 299 0 13 chrX 85681454 85681531 -91292609 + MIR SINE MIR 176 251 -11 855 186 5 1 chrX 85682445 85682650 -91291490 - MER46A DNA MER2_type 0 236 2 1976 130 7 11 chrX 85682840 85683148 -91290992 + AluSx SINE Alu 1 307 0 36 23 0 0 chrX 85683431 85683474 -91290666 + AT_rich Low_complexity Low_complexity 1 43 0 641 247 56 15 chrX 85684741 85685050 -91289090 + MLT1I LTR MaLR 16 367 -42 269 304 16 8 chrX 85685061 85685186 -91288954 - L1MC/D LINE L1 -1925 5883 5758 635 277 51 47 chrX 85685186 85685439 -91288701 - MIR SINE MIR -7 255 2 840 345 74 3 chrX 85685446 85685782 -91288358 - L2 LINE L2 -114 3199 2840 242 289 73 67 chrX 85685862 85686204 -91287936 - L1MC/D LINE L1 -743 5403 5294 2720 39 0 0 chrX 85686204 85686512 -91287628 - AluY SINE Alu -3 308 1 242 289 73 67 chrX 85686512 85686599 -91287541 - L1MC/D LINE L1 -852 5294 5209 2010 141 0 3 chrX 85687007 85687311 -91286829 + AluSx SINE Alu 1 303 -9 264 59 0 0 chrX 85687340 85687374 -91286766 + (TA)n Simple_repeat Simple_repeat 1 34 0 322 340 29 0 chrX 85687658 85687761 -91286379 - L2 LINE L2 -228 3085 2980 535 213 7 47 chrX 85688187 85688337 -91285803 + MER103 DNA DNA 16 159 -7 439 271 9 9 chrX 85688624 85688731 -91285409 + Charlie1 DNA MER1_type 1 107 -2654 1270 109 0 6 chrX 85688732 85688906 -91285234 + AluSq SINE Alu 1 173 -140 377 119 15 0 chrX 85688907 85688974 -91285166 + AluS SINE Alu 227 294 -7 * 653 176 103 0 chrX 85688969 85689105 -91285035 + Charlie1 DNA MER1_type 95 244 -2517 553 176 38 0 chrX 85689083 85689214 -91284926 + Charlie1 DNA MER1_type 2619 2754 -7 * 214 216 101 144 chrX 85689855 85689916 -91284224 + MIR3 SINE MIR 76 138 -70 769 211 0 0 chrX 85689916 85690049 -91284091 + FLAM_A SINE Alu 1 133 0 214 216 101 144 chrX 85690049 85690126 -91284014 + MIR3 SINE MIR 138 208 0 2217 117 0 0 chrX 85690369 85690667 -91283473 - AluSx SINE Alu -14 298 1 21 36 0 0 chrX 85690812 85690840 -91283300 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chrX 85691427 85691454 -91282686 + (A)n Simple_repeat Simple_repeat 1 27 0 2129 121 0 31 chrX 85691548 85691870 -91282270 + AluSx SINE Alu 1 312 0 299 228 20 10 chrX 85692778 85692879 -91281261 + (TTTA)n Simple_repeat Simple_repeat 1 102 0 362 236 45 25 chrX 85693156 85693313 -91280827 - L1ME4a LINE L1 -2 6119 5960 746 294 100 3 chrX 85693432 85693793 -91280347 - L1ME4a LINE L1 -338 5783 5388 1021 322 57 23 chrX 85695677 85696152 -91277988 + L2 LINE L2 2804 3294 -19 1982 170 0 0 chrX 85696310 85696616 -91277524 - AluSx SINE Alu -6 306 1 448 281 0 35 chrX 85696882 85696996 -91277144 + L2 LINE L2 3189 3298 -15 237 108 0 0 chrX 85696998 85697035 -91277105 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 1932 132 32 47 chrX 85697642 85697984 -91276156 + MER1B DNA MER1_type 1 337 0 643 184 66 7 chrX 85698155 85698291 -91275849 + MER3 DNA MER1_type 54 197 -12 309 79 222 0 chrX 85698424 85698487 -91275653 - MADE1 DNA Mariner -2 78 2 278 250 67 33 chrX 85698491 85698527 -91275613 + MER103 DNA DNA 20 53 -113 2524 55 0 3 chrX 85698527 85698837 -91275303 + AluY SINE Alu 3 311 0 278 250 67 33 chrX 85698837 85698920 -91275220 + MER103 DNA DNA 53 143 -23 1266 171 72 78 chrX 85698935 85699281 -91274859 + MLT1A1 LTR MaLR 10 353 -12 6265 92 19 11 chrX 85699428 85700347 -91273793 - L1MA2 LINE L1 0 6304 5379 1772 204 24 8 chrX 85700453 85700836 -91273304 + L1MB1 LINE L1 5631 6019 -149 1831 123 13 23 chrX 85700836 85701137 -91273003 + AluSx SINE Alu 1 298 -14 30665 69 5 5 chrX 85701148 85707288 -91266852 + L1PA6 LINE L1 11 6153 -1 766 215 0 0 chrX 85707296 85707459 -91266681 + L1MB1 LINE L1 5993 6155 -13 414 0 0 0 chrX 85708823 85708869 -91265271 + (T)n Simple_repeat Simple_repeat 1 46 0 1870 166 30 35 chrX 85709145 85709513 -91264627 + MER93b LTR ERV1 1 366 -7 2328 71 0 7 chrX 85709773 85710070 -91264070 + AluY SINE Alu 1 295 -16 2373 103 3 0 chrX 85710138 85710450 -91263690 - AluSp SINE Alu 0 313 1 539 239 55 55 chrX 85711395 85711596 -91262544 + L2 LINE L2 2975 3175 -138 267 274 0 0 chrX 85711596 85711658 -91262482 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 32 43 0 0 chrX 85712042 85712088 -91262052 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chrX 85712222 85712244 -91261896 + AT_rich Low_complexity Low_complexity 1 22 0 204 341 118 44 chrX 85712438 85712795 -91261345 - L2 LINE L2 -909 2405 1999 2148 71 0 4 chrX 85712795 85713061 -91261079 - AluSg SINE Alu -45 265 1 204 341 118 44 chrX 85713061 85713205 -91260935 - L2 LINE L2 -1315 1999 1867 26 30 0 0 chrX 85713474 85713507 -91260633 + AT_rich Low_complexity Low_complexity 1 33 0 2049 167 38 33 chrX 85713607 85714157 -91259983 + MLT2A2 LTR ERVL 1 554 0 484 249 200 10 chrX 85714157 85714362 -91259778 + L1ME3A LINE L1 5562 5805 -365 724 253 126 0 chrX 85714399 85714589 -91259551 + MER58A DNA MER1_type 9 222 -2 915 276 63 9 chrX 85714612 85714931 -91259209 + L1ME3A LINE L1 5825 6160 -10 24 53 0 0 chrX 85715057 85715095 -91259045 + AT_rich Low_complexity Low_complexity 1 38 0 39 38 0 0 chrX 85716918 85716971 -91257169 + AT_rich Low_complexity Low_complexity 1 53 0 2235 92 0 0 chrX 85716987 85717291 -91256849 - AluSg SINE Alu 0 304 1 2349 287 71 35 chrX 85717409 85718709 -91255431 + L1MEc LINE L1 35 1381 -5015 305 279 0 0 chrX 85718709 85718770 -91255370 - MER2 DNA MER2_type 0 345 285 * 488 217 46 23 chrX 85718765 85718896 -91255244 - MER2 DNA MER2_type -101 138 2 352 319 25 6 chrX 85718915 85719062 -91255078 + L1MEc LINE L1 1393 1545 -4851 406 123 68 0 chrX 85719062 85719135 -91255005 + L1PA11 LINE L1 6097 6174 0 838 147 112 18 chrX 85719150 85719320 -91254820 + MSTA LTR MaLR 179 364 -64 2269 110 0 0 chrX 85719320 85719620 -91254520 - AluSx SINE Alu -12 300 1 1508 217 50 76 chrX 85719647 85720345 -91253795 + L1MEc LINE L1 1533 2213 -4183 2115 109 0 0 chrX 85720345 85720672 -91253468 + AluSx SINE Alu 7 333 0 1508 217 50 76 chrX 85720672 85720713 -91253427 + L1MEc LINE L1 2213 2254 -4142 534 149 0 4 chrX 85720713 85720805 -91253335 + MER2 DNA MER2_type 1 89 -150 1478 246 52 38 chrX 85720884 85721494 -91252646 + L1MEc LINE L1 2209 2827 -3388 1139 259 71 40 chrX 85721664 85722112 -91252028 + MLT1C LTR MaLR 6 467 0 248 368 0 9 chrX 85722153 85722267 -91251873 - L1MC/D LINE L1 -2174 5634 5522 188 214 54 18 chrX 85722370 85722426 -91251714 + MIR3 SINE MIR 150 207 -1 298 258 0 65 chrX 85722430 85722501 -91251639 - L2 LINE L2 0 3313 3248 1800 211 17 6 chrX 85722501 85722862 -91251278 + MLT1A1 LTR MaLR 1 365 0 298 258 0 65 chrX 85722862 85722883 -91251257 - L2 LINE L2 -65 3248 3227 1336 179 31 74 chrX 85723011 85723341 -91250799 + MLT1A2 LTR MaLR 4 346 -50 2005 119 0 32 chrX 85723350 85723661 -91250479 + AluSx SINE Alu 1 301 -11 27 29 0 0 chrX 85723931 85723965 -91250175 + AT_rich Low_complexity Low_complexity 1 34 0 550 266 72 19 chrX 85724844 85725066 -91249074 + MIR SINE MIR 14 252 -10 654 157 19 0 chrX 85725289 85725397 -91248743 - FRAM SINE Alu -36 140 31 2504 80 0 3 chrX 85726448 85726762 -91247378 + AluSp SINE Alu 1 313 0 2222 228 32 30 chrX 85727289 85727850 -91246290 + MER68 LTR ERV1 1 562 0 194 331 115 43 chrX 85727991 85728130 -91246010 - L2 LINE L2 -2 3270 3122 2178 103 3 61 chrX 85728809 85729139 -91245001 + AluSx SINE Alu 1 311 -1 861 214 38 81 chrX 85730887 85731042 -91243098 + MLT1A1 LTR MaLR 1 161 -265 2127 76 46 33 chrX 85731042 85731344 -91242796 + AluSq SINE Alu 1 306 -7 861 214 38 81 chrX 85731344 85731580 -91242560 + MLT1A1 LTR MaLR 161 424 -2 375 221 290 28 chrX 85731751 85731896 -91242244 - MIR SINE MIR -72 190 8 189 245 0 41 chrX 85734013 85734062 -91240078 + MIR SINE MIR 206 252 -10 1634 170 3 28 chrX 85734086 85734221 -91239919 + AluJb SINE Alu 1 138 -174 2367 31 0 28 chrX 85734221 85734550 -91239590 + AluY SINE Alu 1 321 0 1634 170 3 28 chrX 85734550 85734702 -91239438 + AluJb SINE Alu 138 282 -30 216 0 0 0 chrX 85734705 85734729 -91239411 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 26 74 0 0 chrX 85735087 85735141 -91238999 + AT_rich Low_complexity Low_complexity 1 54 0 2005 119 3 7 chrX 85735712 85736005 -91238135 + AluSx SINE Alu 1 292 -20 2332 87 0 16 chrX 85736042 85736352 -91237788 + AluSc SINE Alu 5 309 0 2879 232 70 29 chrX 85737568 85738539 -91235601 + L1MC4 LINE L1 7032 8042 0 2834 36 0 0 chrX 85738598 85738935 -91235205 + L1PA4 LINE L1 5816 6152 -3 42 48 0 0 chrX 85740211 85740274 -91233866 + AT_rich Low_complexity Low_complexity 1 63 0 2273 116 0 0 chrX 85740309 85740619 -91233521 + AluSx SINE Alu 1 310 -2 272 277 0 50 chrX 85741021 85741122 -91233018 - MIR SINE MIR -70 138 43 468 35 0 0 chrX 85741427 85741485 -91232655 + (CA)n Simple_repeat Simple_repeat 2 59 0 329 323 148 19 chrX 85741597 85741854 -91232286 + L3b LINE CR1 1176 1465 -118 813 234 114 9 chrX 85742582 85742809 -91231331 + MIR SINE MIR 12 262 0 1296 180 64 113 chrX 85742843 85742955 -91231185 - MLT1B LTR MaLR 0 467 351 1950 148 10 3 chrX 85742955 85743265 -91230875 - AluSx SINE Alu 0 312 1 1296 180 64 113 chrX 85743265 85743614 -91230526 - MLT1B LTR MaLR -116 351 1 235 222 0 0 chrX 85743758 85743812 -91230328 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1861 131 3 7 chrX 85744783 85745065 -91229075 - AluJb SINE Alu -19 293 13 2291 94 0 0 chrX 85746619 85746916 -91227224 - AluSx SINE Alu -15 297 1 1068 274 139 58 chrX 85747519 85748429 -91225711 + L2 LINE L2 2338 3313 0 192 236 167 28 chrX 85748429 85748501 -91225639 - MIR SINE MIR -135 127 46 479 225 43 80 chrX 85749377 85749515 -91224625 - MIR SINE MIR -105 157 25 245 95 0 24 chrX 85750587 85750629 -91223511 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chrX 85750767 85750795 -91223345 + AT_rich Low_complexity Low_complexity 1 28 0 239 332 101 42 chrX 85750841 85751124 -91223016 - L2 LINE L2 -223 3049 2690 1476 142 123 29 chrX 85751124 85751335 -91222805 - MER44D DNA MER2_type -1883 608 418 2132 125 0 3 chrX 85751335 85751631 -91222509 + AluJb SINE Alu 3 297 -15 1476 142 123 29 chrX 85751631 85751728 -91222412 - MER44D DNA MER2_type -2073 418 1 239 332 101 42 chrX 85751728 85751872 -91222268 - L2 LINE L2 -582 2690 2556 327 316 32 63 chrX 85752063 85752221 -91221919 + MER5A DNA MER1_type 1 153 -36 256 250 0 0 chrX 85752734 85752782 -91221358 + L2 LINE L2 3252 3299 -14 453 316 6 23 chrX 85753100 85753274 -91220866 - MIR3 SINE MIR 0 208 38 246 329 12 0 chrX 85757687 85757772 -91216368 + (TA)n Simple_repeat Simple_repeat 1 86 0 4601 146 31 41 chrX 85759415 85759608 -91214532 + L1MB8 LINE L1 5166 5359 -819 2540 69 0 0 chrX 85759608 85759913 -91214227 + AluY SINE Alu 1 305 -6 4601 146 31 41 chrX 85759913 85760660 -91213480 + L1MB8 LINE L1 5359 6103 -75 1757 179 3 6 chrX 85760660 85760973 -91213167 + AluJo SINE Alu 1 312 0 4601 146 31 41 chrX 85760973 85761034 -91213106 + L1MB8 LINE L1 6103 6163 -15 2348 93 0 0 chrX 85761151 85761452 -91212688 - AluY SINE Alu -9 302 2 2270 107 10 7 chrX 85761872 85762181 -91211959 - AluSx SINE Alu -1 311 2 257 293 9 38 chrX 85762190 85762296 -91211844 - L3 LINE CR1 -123 1454 1352 200 268 0 0 chrX 85762368 85762409 -91211731 - L2 LINE L2 -19 3253 3213 288 237 34 0 chrX 85762459 85762518 -91211622 + L2 LINE L2 3251 3311 -2 714 313 15 34 chrX 85762679 85762944 -91211196 + LTR67 LTR ERVL 2 261 -296 227 233 100 11 chrX 85763089 85763179 -91210961 + LTR67 LTR ERVL 431 528 -29 403 306 49 22 chrX 85763379 85763562 -91210578 - L3 LINE CR1 -503 1074 887 351 354 102 60 chrX 85764145 85764459 -91209681 + L2 LINE L2 2943 3269 -3 2648 20 7 0 chrX 85764872 85765175 -91208965 + AluYa5 SINE Alu 1 305 -6 2488 71 0 0 chrX 85765217 85765528 -91208612 - AluY SINE Alu 0 311 1 207 196 54 0 chrX 85765714 85765770 -91208370 + (TTCA)n Simple_repeat Simple_repeat 3 61 0 1449 226 102 27 chrX 85765770 85766497 -91207643 + Charlie7 DNA MER1_type 759 1705 -907 1834 91 117 7 chrX 85766497 85766771 -91207369 + AluSg SINE Alu 1 304 -6 1449 226 102 27 chrX 85766771 85766868 -91207272 + Charlie7 DNA MER1_type 1705 1793 -819 1529 213 113 23 chrX 85767124 85767654 -91206486 + Charlie7 DNA MER1_type 1987 2564 -48 198 0 0 0 chrX 85767672 85767694 -91206446 + (T)n Simple_repeat Simple_repeat 1 22 0 1315 180 90 0 chrX 85767739 85768006 -91206134 - MER58B DNA MER1_type 0 341 51 180 349 61 0 chrX 85768018 85768084 -91206056 + L2 LINE L2 3171 3240 -32 404 317 0 0 chrX 85768164 85768268 -91205872 + L2 LINE L2 3180 3283 -30 292 361 49 49 chrX 85768410 85768593 -91205547 + L2 LINE L2 3082 3264 -8 1403 196 25 0 chrX 85770005 85770280 -91203860 + AluJo SINE Alu 30 311 -1 1399 188 59 10 chrX 85770623 85770911 -91203229 + AluJo SINE Alu 1 302 -10 2322 91 3 0 chrX 85771517 85771815 -91202325 + AluSp SINE Alu 1 299 -14 542 293 29 39 chrX 85772403 85772611 -91201529 + MIR SINE MIR 45 250 -12 2177 124 55 41 chrX 85772844 85773262 -91200878 - L1MA8 LINE L1 -3 6288 5865 1323 161 9 0 chrX 85773262 85773485 -91200655 + L1M2 LINE L1 5422 5646 -654 2286 106 10 0 chrX 85773859 85774162 -91199978 + AluSx SINE Alu 1 306 -6 4130 248 146 36 chrX 85774210 85775041 -91199099 - L2 LINE L2 -429 2885 2146 1946 147 0 26 chrX 85775041 85775347 -91198793 + AluJo SINE Alu 3 300 -12 4130 248 146 36 chrX 85775347 85776005 -91198135 - L2 LINE L2 -1168 2146 1233 203 193 246 0 chrX 85777163 85777220 -91196920 - L2 LINE L2 -11 3302 3232 976 201 38 19 chrX 85778702 85778911 -91195229 + MIR SINE MIR 2 214 -48 349 222 0 25 chrX 85779595 85779676 -91194464 - MIR3 SINE MIR -2 206 128 1977 109 7 53 chrX 85780119 85780423 -91193717 + AluSg SINE Alu 1 290 -20 27 29 0 0 chrX 85781129 85781163 -91192977 + AT_rich Low_complexity Low_complexity 1 34 0 31 44 0 0 chrX 85781591 85781636 -91192504 + AT_rich Low_complexity Low_complexity 1 45 0 234 315 27 0 chrX 85782853 85782926 -91191214 - MIR3 SINE MIR -5 203 129 1448 252 84 18 chrX 85783071 85783755 -91190385 + L2 LINE L2 2581 3307 -6 245 361 31 8 chrX 85783757 85783887 -91190253 + L2 LINE L2 2716 2848 -466 387 224 17 132 chrX 85785539 85785585 -91188555 - L2 LINE L2 -1 3312 3262 3225 78 9 9 chrX 85785585 85786035 -91188105 + LTR7 LTR ERV1 1 450 0 387 224 17 132 chrX 85786035 85786162 -91187978 - L2 LINE L2 -51 3262 3159 1724 124 20 47 chrX 85787599 85787954 -91186186 + MER4A LTR ERV1 261 664 0 2123 114 0 13 chrX 85788311 85788609 -91185531 + AluSx SINE Alu 1 294 -18 533 308 56 20 chrX 85788688 85788753 -91185387 + L2 LINE L2 3108 3169 -144 2221 82 4 0 chrX 85788753 85789034 -91185106 - AluSg1 SINE Alu -6 303 22 533 308 56 20 chrX 85789034 85789163 -91184977 + L2 LINE L2 3169 3309 -4 594 281 125 10 chrX 85789536 85789839 -91184301 - MER46C DNA MER2_type 0 338 1 545 274 91 21 chrX 85789924 85790165 -91183975 - MIR SINE MIR -2 260 3 277 380 9 0 chrX 85790429 85790537 -91183603 + L2 LINE L2 3181 3289 -24 201 147 0 0 chrX 85790572 85790606 -91183534 + (GA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chrX 85791412 85791434 -91182706 + AT_rich Low_complexity Low_complexity 1 22 0 235 232 80 45 chrX 85791486 85791598 -91182542 - Zaphod DNA AcHobo -430 3601 3486 2320 97 0 7 chrX 85792596 85792905 -91181235 + AluSx SINE Alu 1 307 -5 966 153 77 0 chrX 85794153 85794336 -91179804 + LTR55 LTR ERV 1 197 -351 225 286 29 0 chrX 85794373 85794443 -91179697 + GA-rich Low_complexity Low_complexity 4 75 0 2289 95 0 3 chrX 85794452 85794748 -91179392 - AluSx SINE Alu -17 295 1 533 263 66 0 chrX 85794886 85795023 -91179117 - MIR SINE MIR -13 249 104 1624 154 31 31 chrX 85796966 85797291 -91176849 + L1 LINE L1 4582 4906 -1240 960 270 64 18 chrX 85798532 85799401 -91174739 + L1M4 LINE L1 2289 3235 -2911 591 263 0 0 chrX 85799908 85800041 -91174099 + FLAM_A SINE Alu 1 133 0 239 181 125 69 chrX 85800046 85800118 -91174022 + MIR3 SINE MIR 133 208 0 1743 181 0 0 chrX 85800361 85800659 -91173481 - AluSx SINE Alu -14 298 1 2177 115 13 35 chrX 85802038 85802352 -91171788 - AluSx SINE Alu -7 305 1 3548 129 6 11 chrX 85802352 85803245 -91170895 - L1M1 LINE L1 -523 5782 4892 795 304 112 30 chrX 85803354 85803995 -91170145 + L2 LINE L2 2624 3307 -6 27 29 0 0 chrX 85805293 85805327 -91168813 + AT_rich Low_complexity Low_complexity 1 34 0 1461 178 3 33 chrX 85805605 85805909 -91168231 - AluSx SINE Alu -17 295 1 2319 87 10 0 chrX 85806144 85806442 -91167698 - AluSp SINE Alu -12 301 1 486 329 0 28 chrX 85806458 85806601 -91167539 + L2 LINE L2 3134 3272 0 213 265 0 0 chrX 85806798 85806847 -91167293 + (TG)n Simple_repeat Simple_repeat 2 50 0 967 186 17 0 chrX 85807365 85807537 -91166603 - FRAM SINE Alu -9 167 1 1610 176 27 41 chrX 85808507 85808876 -91165264 - MER93b LTR ERV1 -9 364 1 279 0 0 0 chrX 85809153 85809184 -91164956 + (A)n Simple_repeat Simple_repeat 1 31 0 183 80 0 0 chrX 85809666 85809691 -91164449 + (TA)n Simple_repeat Simple_repeat 1 25 0 1942 148 0 7 chrX 85809718 85810023 -91164117 - AluSx SINE Alu -9 303 1 2249 88 0 10 chrX 85810520 85810828 -91163312 + AluY SINE Alu 1 305 -6 210 118 0 0 chrX 85811587 85811621 -91162519 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 411 289 0 35 chrX 85811623 85811737 -91162403 - L2 LINE L2 -15 3298 3189 1470 214 0 13 chrX 85812004 85812307 -91161833 + AluSx SINE Alu 2 300 -12 181 340 0 0 chrX 85812482 85812535 -91161605 - L2 LINE L2 -34 3279 3227 314 68 0 0 chrX 85814100 85814144 -91159996 + Alu SINE Alu 238 281 -20 327 65 0 0 chrX 85814146 85814192 -91159948 + (CAAT)n Simple_repeat Simple_repeat 2 47 0 875 112 0 0 chrX 85814194 85814310 -91159830 - AluSq/x SINE Alu -193 120 5 236 311 0 0 chrX 85814984 85815058 -91159082 - Charlie8 DNA MER1_type -3 2414 2341 833 258 20 63 chrX 85815085 85815387 -91158753 - Charlie8 DNA MER1_type -2128 289 1 410 220 54 113 chrX 85815396 85815564 -91158576 - MER5A DNA MER1_type -1 188 31 26 82 0 0 chrX 85815736 85815797 -91158343 + AT_rich Low_complexity Low_complexity 1 61 0 562 136 0 29 chrX 85815953 85816056 -91158084 - FRAM SINE Alu -3 173 74 1363 77 18 0 chrX 85816062 85816230 -91157910 + AluSg SINE Alu 1 171 -139 5320 118 19 11 chrX 85816331 85817213 -91156927 - L1MA2 LINE L1 -37 6267 5379 1655 204 24 8 chrX 85817319 85817702 -91156438 + L1MB1 LINE L1 5631 6019 -149 1837 123 13 23 chrX 85817702 85818003 -91156137 + AluSx SINE Alu 1 298 -14 3946 188 43 31 chrX 85818014 85818986 -91155154 + L1P LINE L1 11 994 -5152 2181 114 0 0 chrX 85819230 85819510 -91154630 - AluSq SINE Alu -31 282 3 358 304 152 0 chrX 85819571 85819696 -91154444 - MER91A DNA MER1_type -10 186 43 276 250 128 47 chrX 85820955 85821127 -91153013 + L1MC4 LINE L1 7840 8025 -17 5715 79 42 5 chrX 85822635 85823514 -91150626 + L1PB1 LINE L1 5235 6149 -2 2288 82 7 0 chrX 85825685 85825978 -91148162 + AluSg1 SINE Alu 1 295 -14 563 261 47 27 chrX 85826633 85826890 -91147250 - HAL1 LINE L1 -1 2506 2245 4270 141 38 12 chrX 85827593 85828360 -91145780 - L1MC1 LINE L1 0 6333 5547 2185 104 10 0 chrX 85828533 85828831 -91145309 - AluSp SINE Alu -12 301 1 494 329 0 28 chrX 85828847 85828990 -91145150 + L2 LINE L2 3134 3272 0 465 225 78 28 chrX 85830733 85830747 -91143393 - L1MA10 LINE L1 0 6334 6321 363 269 105 12 chrX 85830747 85830918 -91143222 - L1ME1 LINE L1 -2 6164 5978 2350 218 109 18 chrX 85831026 85831906 -91142234 - L1M4 LINE L1 -2911 3235 2276 401 0 0 20 chrX 85832078 85832128 -91142012 + (TA)n Simple_repeat Simple_repeat 1 49 0 2737 123 42 63 chrX 85832128 85832612 -91141528 - L1MA3 LINE L1 -43 6262 5788 1292 242 10 3 chrX 85832612 85832918 -91141222 - AluSx SINE Alu 0 312 5 2737 123 42 63 chrX 85832918 85832999 -91141141 - L1MA3 LINE L1 -517 5788 5707 404 273 87 27 chrX 85833160 85833310 -91140830 + MIR SINE MIR 98 256 -6 869 63 0 0 chrX 85833510 85833621 -91140519 + HY1 scRNA scRNA 1 111 -1 310 380 100 30 chrX 85833637 85833908 -91140232 + L2 LINE L2 2978 3267 -5 243 152 0 0 chrX 85834408 85834454 -91139686 + (TG)n Simple_repeat Simple_repeat 2 47 0 1939 129 21 0 chrX 85834827 85835107 -91139033 + AluJb SINE Alu 1 286 -26 1097 182 53 5 chrX 85835538 85835747 -91138393 - MER20 DNA MER1_type 0 219 1 1714 157 16 33 chrX 85836099 85836404 -91137736 + AluJo SINE Alu 1 300 -12 2259 99 3 0 chrX 85837473 85837766 -91136374 - AluSx SINE Alu -18 294 1 946 207 129 43 chrX 85837892 85838312 -91135828 + LTR40c LTR ERVL 6 461 -4 435 245 26 54 chrX 85838702 85838835 -91135305 - MIR3 SINE MIR -8 200 70 1014 173 0 23 chrX 85838856 85839029 -91135111 - AluJb SINE Alu -7 305 137 2076 142 0 10 chrX 85839880 85840182 -91133958 + AluSx SINE Alu 2 300 -12 2273 98 0 0 chrX 85840489 85840784 -91133356 + AluSx SINE Alu 1 295 -17 203 255 0 0 chrX 85841706 85841753 -91132387 + MIR SINE MIR 103 149 -113 280 263 42 53 chrX 85842260 85842355 -91131785 - MIR SINE MIR -98 110 17 491 319 141 41 chrX 85843147 85843579 -91130561 + L2 LINE L2 2624 3093 -179 850 210 19 6 chrX 85843615 85843777 -91130363 - FRAM SINE Alu -13 163 1 334 268 0 0 chrX 85843838 85843909 -91130231 + L2 LINE L2 3242 3312 -1 2213 108 3 10 chrX 85843944 85844250 -91129890 + AluSx SINE Alu 1 304 -8 31175 60 1 1 chrX 85944786 85948794 -91025346 - L1P LINE L1 -1512 4634 623 750 83 0 0 chrX 85948792 85948888 -91025252 - L1P LINE L1 -6048 98 3 * 1473 97 14 0 chrX 85948887 85949104 -91025036 - L1PA12 LINE L1 -259 5909 5690 342 300 8 17 chrX 85949151 85949271 -91024869 - L1M4 LINE L1 -2439 3707 3589 232 269 0 0 chrX 85949698 85949750 -91024390 + L1M3d LINE L1 1 52 -5839 6420 240 60 19 chrX 85949973 85953598 -91020542 + L1MB4 LINE L1 350 4361 -2283 4562 168 29 11 chrX 85953607 85954765 -91019375 + L1MB4 LINE L1 5504 6678 0 256 287 43 21 chrX 85955378 85955472 -91018668 + MIR SINE MIR 141 236 -26 431 31 31 61 chrX 85955487 85955585 -91018555 + (TTATA)n Simple_repeat Simple_repeat 1 95 0 429 237 222 12 chrX 85955810 85955998 -91018142 - MIR SINE MIR -18 244 20 193 293 134 0 chrX 85956144 85956226 -91017914 + MIR SINE MIR 115 207 -55 2166 118 3 0 chrX 85956936 85957233 -91016907 + AluSx SINE Alu 1 298 -14 226 170 0 0 chrX 85957399 85957446 -91016694 - U5 snRNA snRNA -69 47 1 847 114 0 0 chrX 85957446 85957569 -91016571 + L1MA3 LINE L1 6183 6305 0 2477 74 0 3 chrX 85958335 85958634 -91015506 + AluY SINE Alu 1 298 -13 5650 74 13 8 chrX 85958645 85959416 -91014724 + L1PA8 LINE L1 5398 6172 0 198 279 16 16 chrX 85959847 85959908 -91014232 + MIR SINE MIR 199 259 -3 259 108 0 0 chrX 85961123 85961160 -91012980 - MLT1L LTR MaLR -6 609 573 5093 27 0 0 chrX 85961209 85961800 -91012340 + L1PA4 LINE L1 5557 6147 -8 26 0 0 0 chrX 85961807 85961833 -91012307 + AT_rich Low_complexity Low_complexity 1 26 0 439 251 56 60 chrX 85962032 85962247 -91011893 - MLT1L LTR MaLR -396 219 6 2079 175 27 2 chrX 85962257 85962658 -91011482 + MSTB LTR MaLR 1 411 -15 293 309 75 0 chrX 85962928 85963022 -91011118 - L2 LINE L2 -6 3307 3207 512 274 32 37 chrX 85963207 85963397 -91010743 - MARNA DNA Mariner -348 238 50 351 288 59 13 chrX 85963264 85963417 -91010723 + MARNA DNA Mariner 398 557 -29 * 6098 141 5 2 chrX 85964062 85965575 -91008565 - L1PB1 LINE L1 0 6151 4635 5585 126 46 93 chrX 85965850 85966517 -91007623 + Tigger3b DNA MER2_type 2 699 -2329 2283 114 0 6 chrX 85966517 85966832 -91007308 + AluSp SINE Alu 1 313 0 5585 126 46 93 chrX 85966832 85967075 -91007065 + Tigger3b DNA MER2_type 699 952 -2076 203 61 30 0 chrX 85967075 85967108 -91007032 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5585 126 46 93 chrX 85967108 85967483 -91006657 + Tigger3b DNA MER2_type 952 1227 -4 1063 270 24 37 chrX 85967940 85968165 -91005975 - L2 LINE L2 0 3313 3093 339 44 0 0 chrX 85968165 85968210 -91005930 + (TG)n Simple_repeat Simple_repeat 1 45 0 1063 270 24 37 chrX 85968210 85968362 -91005778 - L2 LINE L2 -220 3093 2941 22 0 0 0 chrX 85969149 85969171 -91004969 + AT_rich Low_complexity Low_complexity 1 22 0 292 336 24 16 chrX 85971019 85971144 -91002996 - L2 LINE L2 -9 3263 3138 771 240 74 66 chrX 85971604 85972029 -91002111 + MLT2C2 LTR ERVL 83 520 0 293 283 10 10 chrX 85972535 85972658 -91001482 + L1P LINE L1 3555 3677 -2469 5174 138 27 2 chrX 85972658 85973970 -91000170 + L1PA16 LINE L1 4824 6157 -9 456 320 67 0 chrX 85973982 85974176 -90999964 + L1M4 LINE L1 3344 3550 -2596 293 118 20 0 chrX 85974230 85974281 -90999859 + MLT1E2 LTR MaLR 58 109 -517 865 270 26 8 chrX 85974294 85974561 -90999579 + MLT1E2 LTR MaLR 355 626 0 1162 127 6 0 chrX 85974664 85974837 -90999303 + AluSg/x SINE Alu 135 308 -2 6787 125 11 12 chrX 85974854 85976744 -90997396 + L1MA1 LINE L1 4408 6297 -5 25 0 0 0 chrX 85976745 85976770 -90997370 + AT_rich Low_complexity Low_complexity 1 25 0 523 259 60 7 chrX 85977317 85977558 -90996582 + L1ME3A LINE L1 5705 5951 -213 259 307 35 26 chrX 85977616 85977730 -90996410 + L1ME3A LINE L1 5966 6080 -90 1370 206 10 37 chrX 85978546 85978842 -90995298 + AluJb SINE Alu 1 288 -24 723 320 9 4 chrX 85978972 85979203 -90994937 - MIR SINE MIR -7 255 24 1702 128 125 6 chrX 85979935 85980263 -90993877 - THE1C LTR MaLR -8 367 1 9737 128 38 15 chrX 85980263 85981808 -90992332 - THE1C-int LTR MaLR 0 1580 1 274 128 0 21 chrX 85981809 85981856 -90992284 - THE1C LTR MaLR -1 427 382 28786 116 14 57 chrX 85981856 85982262 -90991878 + L1PA7 LINE L1 12 434 -5720 189 0 0 0 chrX 85982262 85982283 -90991857 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 28786 116 14 57 chrX 85982283 85988309 -90985831 + L1PA7 LINE L1 434 6151 -3 1833 121 81 6 chrX 85988309 85988632 -90985508 - THE1C LTR MaLR -28 347 1 2007 157 0 0 chrX 85989860 85990147 -90983993 + AluSx SINE Alu 3 289 -23 22 35 0 0 chrX 85990565 85990594 -90983546 + AT_rich Low_complexity Low_complexity 1 29 0 273 370 74 19 chrX 85991195 85991364 -90982776 - MIR SINE MIR -58 150 31 302 288 186 7 chrX 85992314 85992459 -90981681 - MIR SINE MIR -68 140 21 420 249 77 47 chrX 85992694 85992863 -90981277 - MER69A DNA AcHobo -3 174 1 1173 269 62 0 chrX 85993605 85993995 -90980145 - MARNA DNA Mariner -7 579 166 2701 65 11 6 chrX 85993996 85994349 -90979791 - THE1A LTR MaLR 0 355 1 9479 92 2 0 chrX 85994349 85995655 -90978485 - THE1A-int LTR MaLR 0 1580 272 2622 89 0 11 chrX 85995691 85996050 -90978090 - THE1A LTR MaLR 0 355 1 291 284 37 0 chrX 85996566 85996647 -90977493 - MIR SINE MIR -142 120 37 644 235 36 30 chrX 85996727 85996893 -90977247 - L2 LINE L2 0 3313 3147 6027 197 28 4 chrX 85996893 85998070 -90976070 + L1 LINE L1 10 1214 -6351 587 211 7 0 chrX 85998068 85998210 -90975930 + L1 LINE L1 4165 4307 -3258 * 729 98 43 110 chrX 85998212 85998376 -90975764 + L1MA3 LINE L1 6152 6304 -1 1189 147 6 0 chrX 85998598 85998768 -90975372 - AluSq SINE Alu -142 171 1 306 202 48 48 chrX 85998769 85998853 -90975287 - L2 LINE L2 -778 2536 2453 207 182 0 0 chrX 85999038 85999071 -90975069 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 1107 186 0 0 chrX 85999071 85999259 -90974881 + MLT2B2 LTR ERVL 3 190 -325 4223 187 17 20 chrX 85999259 86000089 -90974051 + ERVL-B2 LTR ERVL 729 1555 -4209 6643 140 28 5 chrX 86000089 86001191 -90972949 + ERVL-B2 LTR ERVL 2607 3733 -2031 10964 152 31 5 chrX 86001197 86003020 -90971120 + ERVL-B2 LTR ERVL 3887 5757 -7 2444 180 16 68 chrX 86003020 86003519 -90970621 + MLT2B2 LTR ERVL 1 473 -42 195 204 0 0 chrX 86003530 86003579 -90970561 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 340 127 0 0 chrX 86003582 86003637 -90970503 + MLT2B2 LTR ERVL 464 518 -2 608 312 86 40 chrX 86004184 86004474 -90969666 - L3 LINE CR1 -2 1575 1300 1418 112 28 16 chrX 86004474 86004725 -90969415 + L1MA8 LINE L1 6028 6281 -10 9613 88 16 1 chrX 86004733 86006873 -90967267 - L1PA7 LINE L1 -8 6146 3985 608 312 86 40 chrX 86006873 86006900 -90967240 - L3 LINE CR1 -283 1294 1234 1911 211 54 77 chrX 86007031 86007603 -90966537 + L1MC5 LINE L1 7087 7670 -291 2237 103 0 0 chrX 86007603 86007894 -90966246 - AluSg SINE Alu -19 291 1 1911 211 54 77 chrX 86007894 86008036 -90966104 + L1MC5 LINE L1 7670 7782 -179 2085 108 27 7 chrX 86008036 86008331 -90965809 + AluSp SINE Alu 2 302 -11 1911 211 54 77 chrX 86008331 86008465 -90965675 + L1MC5 LINE L1 7782 7917 -44 1030 258 136 143 chrX 86008526 86009733 -90964407 - L3 LINE CR1 -342 1235 38 2969 179 36 64 chrX 86009944 86010692 -90963448 + LTR8A LTR ERV1 1 727 0 4206 132 27 24 chrX 86011240 86011938 -90962202 - MER50 LTR ERV1 -23 711 12 684 313 21 21 chrX 86013726 86013969 -90960171 - MIR SINE MIR 0 262 20 527 311 60 13 chrX 86014214 86014449 -90959691 - L2 LINE L2 -949 2365 2120 363 335 56 35 chrX 86014520 86014797 -90959343 - L2 LINE L2 -219 3053 2771 1610 176 30 37 chrX 86015877 86016172 -90957968 + AluJo SINE Alu 1 293 -19 251 288 32 8 chrX 86016179 86016304 -90957836 - L1ME4a LINE L1 -43 6078 5951 338 308 96 8 chrX 86016316 86016566 -90957574 - L1ME4a LINE L1 -238 5883 5612 7511 30 2 1 chrX 86016648 86017934 -90956206 + L1PA4 LINE L1 4865 6152 -3 2374 82 3 0 chrX 86018089 86018381 -90955759 - AluSp SINE Alu -20 293 1 372 244 14 68 chrX 86018675 86018896 -90955244 + L1M4 LINE L1 2210 2418 -3728 1178 172 0 60 chrX 86019108 86019340 -90954800 - MER20 DNA MER1_type -1 218 1 331 302 9 9 chrX 86019392 86019498 -90954642 + MLT1L LTR MaLR 497 602 -13 247 313 81 55 chrX 86019648 86019905 -90954235 - L1ME4a LINE L1 -1578 4568 4319 799 153 15 0 chrX 86019905 86020036 -90954104 - FLAM_C SINE Alu 0 133 1 247 313 81 55 chrX 86020036 86020058 -90954082 - L1ME4a LINE L1 -1827 4319 4299 1076 229 9 5 chrX 86020058 86020281 -90953859 + MER58A DNA MER1_type 1 224 0 247 313 81 55 chrX 86020281 86020444 -90953696 - L1ME4a LINE L1 -1847 4299 4142 1985 175 19 22 chrX 86020444 86020810 -90953330 + MLT1A1 LTR MaLR 1 365 0 247 313 81 55 chrX 86020810 86021320 -90952820 - L1ME4a LINE L1 -2004 4142 3589 21 0 0 0 chrX 86021720 86021741 -90952399 + AT_rich Low_complexity Low_complexity 1 21 0 25100 55 9 8 chrX 86021855 86026016 -90948124 - L1PA5 LINE L1 -2 6152 1988 4074 114 41 5 chrX 86026098 86026728 -90947412 - MER39B LTR ERV1 0 653 1 330 98 20 0 chrX 86027045 86027096 -90947044 - tRNA-Arg-AGG tRNA tRNA -23 53 2 180 179 0 0 chrX 86027457 86027496 -90946644 + (TA)n Simple_repeat Simple_repeat 1 39 0 2843 178 59 28 chrX 86027591 86028231 -90945909 - L1MB7 LINE L1 -16 6168 5509 669 255 26 56 chrX 86028230 86028461 -90945679 + L1M4 LINE L1 3916 4139 -2007 * 2947 245 57 31 chrX 86028468 86029006 -90945134 - L1M4 LINE L1 -5672 870 301 4228 37 10 0 chrX 86029006 86029518 -90944622 + L1PA5 LINE L1 5638 6154 0 2947 245 57 31 chrX 86029518 86029823 -90944317 - L1M4 LINE L1 -6241 301 5 25 65 0 0 chrX 86030225 86030271 -90943869 + AT_rich Low_complexity Low_complexity 1 46 0 2123 122 20 18 chrX 86030373 86030963 -90943177 + LTR8 LTR ERV1 1 691 0 1817 165 108 0 chrX 86031562 86031914 -90942226 - MLT1B LTR MaLR 0 390 1 982 217 13 41 chrX 86031987 86032232 -90941908 - MLT1A2 LTR MaLR 0 505 137 2937 210 123 59 chrX 86032239 86033238 -90940902 - MLT1A2-int LTR MaLR -121 1250 151 2081 109 0 0 chrX 86033238 86033513 -90940627 - AluSq SINE Alu -2 311 37 2937 210 123 59 chrX 86033513 86033671 -90940469 - MLT1A2-int LTR MaLR -1220 151 5 1137 222 15 110 chrX 86033686 86034087 -90940053 - MLT1A2 LTR MaLR -11 363 1 216 364 0 15 chrX 86036109 86036175 -90937965 + L2 LINE L2 3204 3268 -4 1371 220 0 0 chrX 86036272 86036527 -90937613 + AluJb SINE Alu 42 296 -16 2226 194 39 0 chrX 86036543 86037028 -90937112 + L1PB3 LINE L1 4015 4518 -1628 43669 41 5 1 chrX 86037033 86043177 -90930963 + L1PA3 LINE L1 7 6167 0 731 241 0 0 chrX 86043181 86043368 -90930772 + L1PB3 LINE L1 4497 4683 -1463 14018 195 13 8 chrX 86043420 86047925 -90926215 + L1PB1 LINE L1 1630 6146 -5 2428 86 0 6 chrX 86047941 86048254 -90925886 + AluY SINE Alu 1 311 0 2624 222 14 3 chrX 86048257 86048923 -90925217 + L1PB3 LINE L1 4698 5370 -776 1160 170 14 5 chrX 86048923 86049135 -90925005 + L1PB3 LINE L1 5940 6153 -1 23 33 0 0 chrX 86049135 86049165 -90924975 + AT_rich Low_complexity Low_complexity 1 30 0 182 302 16 16 chrX 86049980 86050043 -90924097 - MIR SINE MIR -108 154 92 709 180 6 9 chrX 86050152 86050391 -90923749 + L1P LINE L1 3693 4901 -1245 * 6054 186 16 11 chrX 86050386 86052803 -90921337 + L1MA9 LINE L1 3809 6247 -65 2242 101 0 7 chrX 86052803 86053100 -90921040 + AluSq SINE Alu 1 295 -18 6054 186 16 11 chrX 86053100 86053121 -90921019 + L1MA9 LINE L1 6247 6266 -46 21 89 0 0 chrX 86054879 86054935 -90919205 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chrX 86055421 86055457 -90918683 + AT_rich Low_complexity Low_complexity 1 36 0 531 334 157 33 chrX 86055794 86056431 -90917709 + L2 LINE L2 709 1424 -1890 1310 181 8 0 chrX 86056998 86057236 -90916904 - L1MB1 LINE L1 -59 6109 5870 311 133 67 0 chrX 86057237 86057297 -90916843 + L1MB1 LINE L1 6104 6167 -1 396 311 7 0 chrX 86057338 86057489 -90916651 + L1ME LINE L1 5668 5819 -302 276 283 48 40 chrX 86057543 86057815 -90916325 + L1ME LINE L1 2045 2318 -4078 262 267 0 0 chrX 86057821 86057881 -90916259 + L1ME LINE L1 5602 5661 -572 1057 260 4 30 chrX 86057927 86058196 -90915944 - LTR53 LTR ERVL 0 519 258 2264 236 47 25 chrX 86058317 86059031 -90915109 + L1M3de LINE L1 1047 1783 -4520 2605 132 42 38 chrX 86059044 86059491 -90914649 + L1PA7 LINE L1 2 450 -6011 15268 108 0 3 chrX 86059491 86062576 -90911564 + L1PA7 LINE L1 3376 6466 -3 4081 223 10 14 chrX 86062578 86062701 -90911439 + L1M3de LINE L1 2441 2563 -3819 1902 148 0 0 chrX 86062701 86063018 -90911122 - AluSx SINE Alu 0 317 1 4081 223 10 14 chrX 86063018 86063899 -90910241 + L1M3de LINE L1 2563 3442 -2940 1929 243 9 20 chrX 86063931 86064550 -90909590 + L1PA16 LINE L1 1073 1710 -5871 5785 238 31 5 chrX 86064573 86066202 -90907938 + L1PA16 LINE L1 2471 4132 -3452 12034 173 28 1 chrX 86066217 86066587 -90907553 + L1PA16 LINE L1 4230 4588 -3016 315 0 0 0 chrX 86066587 86066622 -90907518 + (CA)n Simple_repeat Simple_repeat 2 36 0 12034 173 28 1 chrX 86066622 86069488 -90904652 + L1PA16 LINE L1 4588 7595 -9 268 309 72 5 chrX 86069500 86069694 -90904446 + L1M3de LINE L1 3580 3786 -2596 320 162 95 76 chrX 86069694 86069799 -90904341 + MLT1E2 LTR MaLR 3 109 -517 935 273 26 8 chrX 86069812 86070079 -90904061 + MLT1E2 LTR MaLR 355 626 0 316 258 56 17 chrX 86070091 86070214 -90903926 + L1M3de LINE L1 3791 3923 -2459 7333 39 2 1 chrX 86070214 86071542 -90902598 + L1PA5 LINE L1 4824 6152 -2 316 258 56 17 chrX 86071542 86071563 -90902577 + L1M3de LINE L1 3923 3942 -2440 32 0 0 0 chrX 86071563 86071595 -90902545 + AT_rich Low_complexity Low_complexity 1 32 0 491 270 33 19 chrX 86071646 86071861 -90902279 + L1M3de LINE L1 3959 4176 -2206 7199 181 22 3 chrX 86071868 86073471 -90900669 - L1 LINE L1 -2571 4994 3357 601 213 12 6 chrX 86073467 86073627 -90900513 + L1MC2 LINE L1 2743 2903 -3243 * 770 123 16 0 chrX 86073635 86073757 -90900383 + AluSg/x SINE Alu 188 311 -1 375 243 9 9 chrX 86073764 86073875 -90900265 + L1MC2 LINE L1 2909 3019 -3127 1254 177 88 8 chrX 86073875 86074124 -90900016 + LTR48B LTR ERV1 1 269 -375 7508 189 26 58 chrX 86074196 86075612 -90898528 + L1MC2 LINE L1 3120 4580 -1764 2359 59 0 0 chrX 86075612 86075899 -90898241 + AluY SINE Alu 17 303 -8 7508 189 26 58 chrX 86075899 86077810 -90896330 + L1MC2 LINE L1 4580 6333 -11 1080 285 101 41 chrX 86077831 86078364 -90895776 + HAL1 LINE L1 78 642 -1865 339 156 0 65 chrX 86078675 86078752 -90895388 - MER94 DNA DNA -62 72 1 1900 109 112 40 chrX 86079004 86079352 -90894788 - THE1C LTR MaLR -2 373 1 1670 183 118 11 chrX 86079895 86080251 -90893889 - MSTD LTR MaLR -2 394 1 259 266 0 53 chrX 86080333 86080427 -90893713 - L1MC4 LINE L1 -1340 6702 6614 257 310 0 0 chrX 86080366 86080453 -90893687 + L1MC4 LINE L1 6617 6703 -1339 * 365 308 42 0 chrX 86081874 86082017 -90892123 + L1MC/D LINE L1 3723 3871 -2275 405 0 0 0 chrX 86082081 86082126 -90892014 + (TA)n Simple_repeat Simple_repeat 1 45 0 373 241 0 0 chrX 86082126 86082213 -90891927 + L1MC/D LINE L1 5445 5531 -2511 232 250 9 111 chrX 86082295 86082403 -90891737 + MLT1K LTR MaLR 334 430 -158 242 203 31 0 chrX 86082406 86082534 -90891606 + (TA)n Simple_repeat Simple_repeat 2 133 0 183 42 0 0 chrX 86082540 86082564 -90891576 + (CAGAGA)n Simple_repeat Simple_repeat 5 28 0 1580 171 67 76 chrX 86082572 86082907 -90891233 - MSTC LTR MaLR 0 428 96 2060 128 7 0 chrX 86082907 86083203 -90890937 - AluSx SINE Alu -14 298 1 1580 171 67 76 chrX 86083203 86083299 -90890841 - MSTC LTR MaLR -332 96 1 4899 118 14 16 chrX 86083429 86084182 -90889958 - L1PB1 LINE L1 -216 5935 5174 189 0 0 0 chrX 86084182 86084203 -90889937 + (TTA)n Simple_repeat Simple_repeat 2 22 0 4899 118 14 16 chrX 86084203 86084524 -90889616 - L1PB1 LINE L1 -977 5174 4854 12139 182 8 17 chrX 86085493 86087403 -90886737 - L1PB2 LINE L1 0 6151 4226 2373 53 10 10 chrX 86087403 86087705 -90886435 - AluY SINE Alu -9 302 1 12139 182 8 17 chrX 86087705 86088477 -90885663 - L1PB2 LINE L1 -1925 4226 3449 5861 56 0 0 chrX 86088477 86089210 -90884930 - L1PA7 LINE L1 -5 6149 5417 12139 182 8 17 chrX 86089210 86089592 -90884548 - L1PB2 LINE L1 -2702 3449 3065 2122 42 0 0 chrX 86089592 86089853 -90884287 - L1PA5 LINE L1 0 6154 5894 12139 182 8 17 chrX 86089853 86090357 -90883783 - L1PB2 LINE L1 -3086 3065 2616 24 0 0 0 chrX 86090864 86090888 -90883252 + AT_rich Low_complexity Low_complexity 1 24 0 2314 100 0 0 chrX 86091023 86091322 -90882818 - AluSg SINE Alu -11 299 1 25 31 0 0 chrX 86091653 86091685 -90882455 + AT_rich Low_complexity Low_complexity 1 32 0 1635 157 22 0 chrX 86092005 86092272 -90881868 + AluJb SINE Alu 14 286 -26 23 33 0 0 chrX 86092272 86092302 -90881838 + AT_rich Low_complexity Low_complexity 1 30 0 4734 188 18 36 chrX 86092486 86093451 -90880689 + L1MA4 LINE L1 1253 2199 -4366 3856 68 2 4 chrX 86093456 86093959 -90880181 - L1PA7 LINE L1 -6 6148 5647 1113 52 0 0 chrX 86093959 86094094 -90880046 + L1PA7 LINE L1 5520 5654 -500 1538 120 29 4 chrX 86094094 86094368 -90879772 + L1MA4 LINE L1 2190 2470 -4095 1592 203 0 7 chrX 86094398 86094694 -90879446 - AluJo SINE Alu -17 295 2 8764 225 28 42 chrX 86094713 86096398 -90877742 + L1MA4 LINE L1 3345 5053 -2666 10123 24 0 0 chrX 86096398 86098365 -90875775 + L1PA2 LINE L1 4185 6155 0 8764 225 28 42 chrX 86098365 86098516 -90875624 + L1MA4 LINE L1 5053 5205 -2514 279 0 0 0 chrX 86098516 86098547 -90875593 + (CA)n Simple_repeat Simple_repeat 2 32 0 8764 225 28 42 chrX 86098547 86098854 -90875286 + L1MA4 LINE L1 5205 5515 -2204 297 0 0 0 chrX 86098854 86098887 -90875253 + (TA)n Simple_repeat Simple_repeat 2 34 0 8764 225 28 42 chrX 86098887 86100174 -90873966 + L1MA4 LINE L1 5515 6819 -900 207 0 0 0 chrX 86100174 86100197 -90873943 + (CAA)n Simple_repeat Simple_repeat 2 24 0 8764 225 28 42 chrX 86100197 86100391 -90873749 + L1MA4 LINE L1 6819 7014 -705 1556 213 7 0 chrX 86100391 86100673 -90873467 + AluJo SINE Alu 1 284 -28 479 0 0 53 chrX 86100679 86100754 -90873386 + (TA)n Simple_repeat Simple_repeat 2 72 0 8764 225 28 42 chrX 86100754 86100818 -90873322 + L1MA4 LINE L1 7019 7082 -637 699 224 0 0 chrX 86100818 86100943 -90873197 + FLAM_A SINE Alu 1 125 -8 8764 225 28 42 chrX 86100943 86101460 -90872680 + L1MA4 LINE L1 7082 7447 -272 2748 181 18 74 chrX 86101454 86102118 -90872022 + LTR8 LTR ERV1 65 691 0 * 296 266 65 81 chrX 86102162 86102546 -90871594 - HAL1 LINE L1 -1155 1352 975 4220 86 7 5 chrX 86103404 86103995 -90870145 - L1PA12 LINE L1 0 6168 5577 4294 284 31 23 chrX 86104256 86105883 -90868257 + L1PBa LINE L1 3 1643 -5220 * 5739 179 8 20 chrX 86105856 86106915 -90867225 + L1PB3 LINE L1 13 1058 -5146 14752 195 18 10 chrX 86106938 86111964 -90862176 + L1PB3 LINE L1 1168 6205 -6 251 214 76 76 chrX 86112102 86112233 -90861907 - L2 LINE L2 -65 3248 3118 212 163 47 0 chrX 86113742 86113785 -90860355 + A-rich Low_complexity Low_complexity 3 47 0 504 269 35 98 chrX 86114522 86114778 -90859362 + MIR SINE MIR 13 252 -10 809 265 0 5 chrX 86114858 86115043 -90859097 + MIR SINE MIR 64 247 -15 195 42 0 0 chrX 86115050 86115074 -90859066 + (TG)n Simple_repeat Simple_repeat 2 25 0 1700 304 92 17 chrX 86116243 86117390 -90856750 + L1ME1 LINE L1 18 1251 -5145 1635 264 75 12 chrX 86117421 86118651 -90855489 + L1ME1 LINE L1 1485 2906 -3309 333 372 77 16 chrX 86118681 86118864 -90855276 + L1ME LINE L1 270 463 -5607 393 223 209 20 chrX 86118919 86119067 -90855073 - L1M4 LINE L1 -2045 4101 3926 3792 147 149 14 chrX 86119167 86119961 -90854179 + Tigger3b DNA MER2_type 326 1226 -5 1215 263 42 27 chrX 86119976 86120078 -90854062 + L1ME1 LINE L1 5011 5110 -1125 588 241 103 20 chrX 86120078 86120273 -90853867 + MER58C DNA MER1_type 1 211 -4 1215 263 42 27 chrX 86120273 86120808 -90853332 + L1ME1 LINE L1 5110 5649 -586 648 214 48 21 chrX 86120805 86120992 -90853148 + L1ME1 LINE L1 6038 6229 -6 * 1813 214 100 120 chrX 86121085 86121927 -90852213 - LTR28 LTR ERV1 -1 1019 1 1100 281 85 18 chrX 86122126 86122574 -90851566 + MLT1L LTR MaLR 105 582 -33 2362 67 3 10 chrX 86123838 86124151 -90849989 + AluY SINE Alu 1 311 0 228 287 110 29 chrX 86124824 86124960 -90849180 + MIR SINE MIR 46 192 -70 233 184 135 99 chrX 86125640 86125691 -90848449 - L1MA10 LINE L1 -2 6332 6282 2286 205 29 80 chrX 86125691 86125752 -90848388 - L1MD3 LINE L1 -746 5400 5337 1819 176 10 0 chrX 86125752 86126053 -90848087 - AluJb SINE Alu -6 306 3 2286 205 29 80 chrX 86126053 86126489 -90847651 - L1MD3 LINE L1 -809 5337 5682 371 22 0 0 chrX 86126489 86126534 -90847606 - MADE1 DNA Mariner -35 45 1 2286 205 29 80 chrX 86126534 86127109 -90847031 - L1MD3 LINE L1 -463 5683 5080 492 68 0 14 chrX 86127109 86127182 -90846958 + L1PA11 LINE L1 6103 6174 0 423 97 32 43 chrX 86127379 86127472 -90846668 - L1MB7 LINE L1 0 6184 6093 593 210 99 6 chrX 86127476 86127657 -90846483 - L1M4 LINE L1 -816 5330 5133 * 4096 219 90 13 chrX 86127642 86128276 -90845864 - MLT1C-int LTR MaLR -107 1264 680 1591 230 41 79 chrX 86128276 86128912 -90845228 - LTR9 LTR ERV1 0 612 1 4096 219 90 13 chrX 86128912 86129340 -90844800 - MLT1C-int LTR MaLR -691 680 2 1536 235 34 22 chrX 86129341 86129753 -90844387 - MLT1C LTR MaLR 0 467 51 4156 250 29 21 chrX 86129827 86131125 -90843015 - L1M4 LINE L1 -1913 4233 2926 * 7774 187 22 22 chrX 86131114 86133202 -90840938 + L1MA9 LINE L1 3734 5828 -484 1610 208 10 0 chrX 86133202 86133500 -90840640 + AluJo SINE Alu 1 301 -11 7774 187 22 22 chrX 86133500 86133975 -90840165 + L1MA9 LINE L1 5828 6302 -10 254 220 20 0 chrX 86134008 86134058 -90840082 + L2 LINE L2 3258 3308 -5 22 0 0 0 chrX 86134519 86134541 -90839599 + AT_rich Low_complexity Low_complexity 1 22 0 6661 126 8 16 chrX 86134541 86135934 -90838206 - L1MA2 LINE L1 0 6304 4922 7790 184 53 29 chrX 86136322 86138334 -90835806 + L1PB2 LINE L1 2671 4727 -2135 5179 50 3 0 chrX 86138329 86139167 -90834973 - L1PA7 LINE L1 -266 5888 5046 * 2244 59 3 0 chrX 86139167 86139452 -90834688 + L1PA7 LINE L1 5859 6146 -8 6266 157 15 6 chrX 86139457 86141585 -90832555 + L1PB2 LINE L1 4714 6860 -7 674 174 58 17 chrX 86145310 86145482 -90828658 - MER53 DNA DNA -10 179 1 423 298 16 3 chrX 86146112 86146295 -90827845 + MIR SINE MIR 13 255 -7 2031 119 3 0 chrX 86146394 86146732 -90827408 - AluSq SINE Alu 0 339 1 198 276 67 57 chrX 86147996 86148101 -90826039 + MIR SINE MIR 82 187 -75 381 299 56 90 chrX 86148913 86149291 -90824849 - HAL1 LINE L1 -2118 389 25 254 384 114 17 chrX 86149301 86149538 -90824602 - L2 LINE L2 -564 2750 2491 375 299 19 0 chrX 86149586 86149693 -90824447 - L2 LINE L2 -991 2323 2215 369 43 0 0 chrX 86149804 86149851 -90824289 + (CA)n Simple_repeat Simple_repeat 2 48 0 1506 163 37 19 chrX 86150485 86150755 -90823385 + AluJb SINE Alu 1 275 -37 181 283 19 0 chrX 86152049 86152102 -90822038 - MIR SINE MIR -71 137 84 212 0 36 0 chrX 86152872 86152900 -90821240 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1949 140 104 3 chrX 86153331 86153659 -90820481 - MER46B DNA MER2_type 0 236 1 458 256 113 6 chrX 86154373 86154533 -90819607 - MIR SINE MIR -60 202 26 2218 145 57 8 chrX 86155444 86155816 -90818324 + MSTA LTR MaLR 1 390 -38 186 250 0 23 chrX 86156922 86156966 -90817174 - MIR SINE MIR -4 258 216 2370 84 0 0 chrX 86157486 86157785 -90816355 - AluSc SINE Alu -10 299 1 560 306 126 68 chrX 86159027 86159439 -90814701 - MLT1H LTR MaLR 0 549 114 394 303 94 56 chrX 86159545 86159905 -90814235 + L1 LINE L1 4762 5135 -1011 1401 232 3 10 chrX 86159919 86160216 -90813924 + AluJo SINE Alu 5 299 -13 5880 193 34 23 chrX 86160279 86162552 -90811588 + L1MB4 LINE L1 3865 6174 -6 376 160 0 43 chrX 86162566 86162660 -90811480 + L1MB8 LINE L1 6089 6178 0 5367 156 24 85 chrX 86163062 86165037 -90809103 + L1PA15 LINE L1 4295 6165 0 243 135 0 0 chrX 86165415 86165452 -90808688 - MLT2B1 LTR ERVL -4 393 357 333 47 0 0 chrX 86165455 86165498 -90808642 + (TG)n Simple_repeat Simple_repeat 1 43 0 1022 215 5 0 chrX 86165506 86165711 -90808429 - MLT2B1 LTR ERVL -314 206 1 700 246 107 57 chrX 86166998 86167182 -90806958 + L1ME2 LINE L1 2912 3085 -3061 2044 149 7 0 chrX 86167182 86167491 -90806649 + AluSx SINE Alu 1 311 -1 700 246 107 57 chrX 86167491 86167935 -90806205 + L1ME2 LINE L1 3085 3571 -2575 598 288 45 61 chrX 86167992 86168265 -90805875 + L1ME2 LINE L1 5491 5754 -410 2620 136 34 10 chrX 86168265 86168683 -90805457 - MSTA LTR MaLR 0 428 1 598 288 45 61 chrX 86168683 86168881 -90805259 + L1ME2 LINE L1 5754 5954 -210 950 49 33 0 chrX 86169390 86169512 -90804628 - L1PA2 LINE L1 -234 5921 5796 2293 33 0 0 chrX 86169512 86169786 -90804354 + L1PA2 LINE L1 5881 6155 0 331 368 15 23 chrX 86170353 86170486 -90803654 - MIR3 SINE MIR -54 154 23 1766 148 3 0 chrX 86170538 86170841 -90803299 + L1MA5 LINE L1 5997 6300 0 264 59 0 0 chrX 86171249 86171283 -90802857 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 327 49 0 0 chrX 86171282 86171323 -90802817 + (GA)n Simple_repeat Simple_repeat 2 42 0 378 0 0 0 chrX 86173456 86173498 -90800642 + (TG)n Simple_repeat Simple_repeat 2 43 0 635 304 68 5 chrX 86173661 86173881 -90800259 + MIR SINE MIR 22 255 -7 16923 142 12 10 chrX 86174384 86176742 -90797398 + Tigger2 DNA MER2_type 1 2367 -351 2514 109 0 11 chrX 86176742 86177110 -90797030 + THE1B LTR MaLR 1 364 0 16923 142 12 10 chrX 86177110 86177463 -90796677 + Tigger2 DNA MER2_type 2367 2718 0 296 252 56 71 chrX 86177711 86177977 -90796163 - L1M4 LINE L1 -1099 5047 4786 2416 191 55 102 chrX 86178171 86178899 -90795241 - LTR8A LTR ERV1 0 727 34 230 307 44 36 chrX 86178966 86179191 -90794949 - L1M4 LINE L1 -1680 4466 4240 592 316 52 4 chrX 86179378 86179650 -90794490 - L1M4 LINE L1 -2167 3979 3695 553 282 8 8 chrX 86179653 86179784 -90794356 + MER5B DNA MER1_type 48 178 0 1736 165 0 7 chrX 86179970 86180249 -90793891 - HUERS-P1 LTR ERV1 -5986 277 1 3006 152 24 117 chrX 86180249 86180819 -90793321 - LTR8 LTR ERV1 0 691 208 339 33 67 0 chrX 86180819 86180879 -90793261 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 3006 152 24 117 chrX 86180879 86181070 -90793070 - LTR8 LTR ERV1 -483 208 1 834 164 25 6 chrX 86181100 86181259 -90792881 - PABL_B LTR ERV1 0 667 506 734 206 21 0 chrX 86181251 86181392 -90792748 + LTR1B LTR ERV1 683 826 0 * 1008 126 21 46 chrX 86182614 86182628 -90791512 + MER39B LTR ERV1 452 465 -157 2801 116 162 24 chrX 86182628 86183164 -90790976 + MER4B LTR ERV1 1 610 0 1008 126 21 46 chrX 86183164 86183346 -90790794 + MER39B LTR ERV1 465 622 0 379 309 43 33 chrX 86184422 86184585 -90789555 + MIR SINE MIR 1 163 -45 279 307 102 11 chrX 86185291 86185379 -90788761 + L2 LINE L2 3141 3236 -36 410 340 20 15 chrX 86186175 86186375 -90787765 + L2 LINE L2 2327 2527 -787 237 282 12 71 chrX 86186426 86186511 -90787629 - L2 LINE L2 0 3272 3193 232 352 58 55 chrX 86186797 86187124 -90787016 - L2 LINE L2 -469 2845 2518 186 329 151 26 chrX 86187209 86187361 -90786779 - L2 LINE L2 -963 2351 2181 1108 317 53 0 chrX 86187364 86187702 -90786438 - MLT1J LTR MaLR 0 511 156 247 268 78 67 chrX 86187702 86187881 -90786259 - L2 LINE L2 -1431 1883 1703 24 32 0 0 chrX 86189572 86189603 -90784537 + AT_rich Low_complexity Low_complexity 1 31 0 188 250 19 19 chrX 86189753 86189805 -90784335 + L2 LINE L2 3221 3272 0 261 293 0 103 chrX 86189847 86189963 -90784177 - MIR SINE MIR -65 143 40 615 260 0 0 chrX 86190187 86190310 -90783830 - L2 LINE L2 -2 3311 3189 424 270 9 27 chrX 86190324 86190435 -90783705 - MIR SINE MIR -57 151 43 258 32 0 0 chrX 86190539 86190570 -90783570 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 210 306 0 0 chrX 86190570 86190632 -90783508 + CT-rich Low_complexity Low_complexity 1 62 0 758 78 0 0 chrX 86190758 86190861 -90783279 - L1PA10 LINE L1 -4 6164 6062 234 191 0 0 chrX 86190913 86190960 -90783180 + GA-rich Low_complexity Low_complexity 3 49 0 311 334 42 13 chrX 86192190 86192392 -90781748 + L1ME LINE L1 4085 4292 -1854 233 279 54 0 chrX 86192599 86192728 -90781412 + L1P LINE L1 5254 5389 -767 7769 20 0 0 chrX 86192730 86193828 -90780312 + L1PA3 LINE L1 5058 6155 0 23 0 0 0 chrX 86193832 86193855 -90780285 + AT_rich Low_complexity Low_complexity 1 23 0 1704 139 49 40 chrX 86193947 86194271 -90779869 - LTR8A LTR ERV1 0 727 401 1126 172 5 5 chrX 86194282 86194474 -90779666 - LTR8A LTR ERV1 -535 192 1 365 293 109 8 chrX 86194492 86194731 -90779409 + L1ME LINE L1 5561 5823 -298 1146 244 92 15 chrX 86195628 86196308 -90777832 + L1MD3 LINE L1 7147 7980 -15 1508 128 25 12 chrX 86196331 86196574 -90777566 + L1PA16 LINE L1 5919 6164 -2 2331 88 0 3 chrX 86196626 86196920 -90777220 + AluSg SINE Alu 1 293 -17 1481 200 3 39 chrX 86197087 86197205 -90776935 - L1PB4 LINE L1 -3 6153 6032 2092 208 65 25 chrX 86197205 86197772 -90776368 - LTR49 LTR ERV1 -3 592 3 1481 200 3 39 chrX 86197772 86197988 -90776152 - L1PB4 LINE L1 -124 6032 5831 258 206 22 22 chrX 86198836 86198928 -90775212 + (TAA)n Simple_repeat Simple_repeat 3 94 0 709 264 165 0 chrX 86198948 86199160 -90774980 - MIR SINE MIR -2 260 14 247 300 75 25 chrX 86199239 86199359 -90774781 - MLT1L LTR MaLR -8 607 482 624 58 5 271 chrX 86199392 86199580 -90774560 + MER61B LTR ERV1 1 138 -287 1551 174 33 4 chrX 86199635 86199911 -90774229 + MER61D LTR ERV1 216 499 -2 * 2122 161 3 9 chrX 86199911 86200259 -90773881 + MLT1A1 LTR MaLR 20 365 0 420 302 20 7 chrX 86200396 86200545 -90773595 - LTR16B LTR ERVL 0 464 314 692 228 94 17 chrX 86200548 86200728 -90773412 - MLT1A1 LTR MaLR 0 365 172 1965 226 153 43 chrX 86200924 86201591 -90772549 + LTR68 LTR ERV1 1 740 0 263 336 9 18 chrX 86205056 86205169 -90768971 + L2 LINE L2 2549 2660 -654 23535 32 0 3 chrX 86205184 86208815 -90765325 + L1PA3 LINE L1 2519 6154 -1 489 250 25 103 chrX 86208919 86208953 -90765187 - MER5A DNA MER1_type 0 189 154 778 188 5 127 chrX 86208953 86209150 -90764990 - MER45A DNA AcHobo -1 177 5 489 250 25 103 chrX 86209150 86209319 -90764821 - MER5A DNA MER1_type -35 154 2 418 314 49 43 chrX 86209749 86209934 -90764206 - MIR3 SINE MIR -11 197 12 312 250 134 18 chrX 86209995 86210107 -90764033 - L2 LINE L2 0 3313 3189 458 261 76 59 chrX 86210263 86210434 -90763706 - MER20B DNA MER1_type -44 175 4 379 330 10 67 chrX 86211008 86211217 -90762923 - MIR SINE MIR -46 216 20 592 361 47 27 chrX 86211462 86211866 -90762274 + L2 LINE L2 1819 2230 -1084 29 0 0 0 chrX 86212275 86212304 -90761836 + AT_rich Low_complexity Low_complexity 1 29 0 3076 88 35 7 chrX 86212544 86212584 -90761556 - MLT2A1 LTR ERVL 0 444 407 506 104 10 0 chrX 86212584 86212680 -90761460 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 3076 88 35 7 chrX 86212680 86213071 -90761069 - MLT2A1 LTR ERVL -37 407 1 449 242 48 11 chrX 86213079 86213265 -90760875 + L1ME LINE L1 2857 3049 -3097 309 271 119 19 chrX 86213257 86213575 -90760565 + L1ME LINE L1 5378 5701 -469 * 21 0 0 0 chrX 86213855 86213876 -90760264 + AT_rich Low_complexity Low_complexity 1 21 0 4387 258 56 82 chrX 86214096 86215575 -90758565 + L1PA12 LINE L1 9 2571 -5013 307 206 0 16 chrX 86215570 86215633 -90758507 - L1PBa LINE L1 -6658 205 144 * 2026 88 4 0 chrX 86215633 86215896 -90758244 + AluSp SINE Alu 50 313 0 1420 165 4 0 chrX 86215906 86216149 -90757991 - Tigger1 DNA MER2_type -352 2066 1823 495 171 0 57 chrX 86216142 86216247 -90757893 - Tigger1 DNA MER2_type -2319 99 1 * 753 218 0 0 chrX 86216247 86216394 -90757746 + L1M4c LINE L1 1620 1766 -4618 1921 120 7 17 chrX 86216394 86216694 -90757446 + L1PA8 LINE L1 5874 6170 -2 1692 158 8 0 chrX 86216715 86216980 -90757160 + L1MA9 LINE L1 228 494 -5710 * 6269 167 21 43 chrX 86216974 86218916 -90755224 + L1MA9 LINE L1 4043 5953 -416 612 114 0 0 chrX 86218919 86219007 -90755133 + AluSg/x SINE Alu 210 297 -15 465 237 116 21 chrX 86219008 86219198 -90754942 + L1ME3A LINE L1 5493 5676 -494 18463 168 30 12 chrX 86219372 86225033 -90749107 + L1MA1 LINE L1 6 5846 -1875 2192 119 3 3 chrX 86225033 86225343 -90748797 + AluSx SINE Alu 1 310 -2 18463 168 30 12 chrX 86225343 86227249 -90746891 + L1MA1 LINE L1 5846 7716 -5 25 0 0 0 chrX 86227250 86227275 -90746865 + AT_rich Low_complexity Low_complexity 1 25 0 574 259 60 7 chrX 86227822 86228063 -90746077 + L1ME3A LINE L1 5705 5951 -213 2914 187 30 0 chrX 86228211 86228714 -90745426 + L1PA12 LINE L1 1068 1585 -5996 1189 185 37 116 chrX 86229245 86229624 -90744516 - L1MA10 LINE L1 0 6334 5986 312 319 0 22 chrX 86229688 86229803 -90744337 + MER5A DNA MER1_type 50 171 -18 560 194 69 57 chrX 86229836 86229932 -90744208 + MER69A DNA AcHobo 1 101 -2425 2398 78 0 0 chrX 86229932 86230240 -90743900 - AluY SINE Alu -3 308 1 560 194 69 57 chrX 86230240 86230318 -90743822 + MER69A DNA AcHobo 101 177 0 1558 163 27 40 chrX 86231588 86231889 -90742251 - AluJo SINE Alu -15 297 1 465 258 8 0 chrX 86231947 86232079 -90742061 - MER103 DNA DNA -3 163 31 218 81 27 0 chrX 86234286 86234323 -90739817 + (CA)n Simple_repeat Simple_repeat 1 38 0 501 319 25 12 chrX 86235144 86235307 -90738833 - MIR3 SINE MIR -5 203 39 1969 255 108 16 chrX 86235561 86235810 -90738330 - MER90 LTR ERV1 0 614 389 2292 101 48 28 chrX 86235810 86236167 -90737973 - THE1B LTR MaLR 0 364 1 1969 255 108 16 chrX 86236167 86236470 -90737670 - MER90 LTR ERV1 -225 389 11 194 281 0 73 chrX 86236695 86236777 -90737363 + MIR SINE MIR 47 122 -140 2181 112 17 0 chrX 86237284 86237579 -90736561 - AluSq SINE Alu -13 300 1 230 278 42 0 chrX 86238171 86238243 -90735897 + MIR3 SINE MIR 133 207 -1 1957 175 62 3 chrX 86239068 86239457 -90734683 - MER63B DNA MER1_type -23 413 2 737 262 52 14 chrX 86239683 86240027 -90734113 + L1ME4a LINE L1 5543 6027 -94 227 308 15 8 chrX 86240050 86240183 -90733957 - HAL1b LINE L1 -8 1340 1207 264 59 0 0 chrX 86240195 86240229 -90733911 + (CA)n Simple_repeat Simple_repeat 1 34 0 763 253 118 0 chrX 86240506 86240743 -90733397 + MLT1H1 LTR MaLR 291 555 0 201 265 0 0 chrX 86240799 86240848 -90733292 + (CATATA)n Simple_repeat Simple_repeat 6 54 0 391 262 28 62 chrX 86241034 86241179 -90732961 - MIR SINE MIR -122 140 1 1689 127 92 13 chrX 86243148 86243462 -90730678 + MER44D DNA MER2_type 1 609 0 439 321 36 30 chrX 86244286 86244451 -90729689 - L2 LINE L2 0 3272 3107 2244 143 23 3 chrX 86244724 86245110 -90729030 - L1MA4 LINE L1 -6 6294 5901 3337 226 15 12 chrX 86245304 86245535 -90728605 - L1 LINE L1 -2787 3359 3130 2135 42 0 0 chrX 86245535 86245796 -90728344 - L1PA5 LINE L1 0 6154 5894 3337 226 15 12 chrX 86245796 86246428 -90727712 - L1 LINE L1 -3016 3130 2493 3240 168 0 4 chrX 86246427 86246939 -90727201 - L1PBb LINE L1 -5535 669 160 * 5435 107 11 66 chrX 86246939 86247974 -90726166 + L1PB2 LINE L1 5169 6150 -1 26 0 0 0 chrX 86248803 86248829 -90725311 + AT_rich Low_complexity Low_complexity 1 26 0 657 267 196 17 chrX 86249742 86249951 -90724189 - L1ME4a LINE L1 0 6121 5951 358 69 35 0 chrX 86249951 86250009 -90724131 + (TA)n Simple_repeat Simple_repeat 1 60 0 657 267 196 17 chrX 86250009 86250334 -90723806 - L1ME4a LINE L1 -170 5951 5491 186 103 0 0 chrX 86250337 86250366 -90723774 + (TGGA)n Simple_repeat Simple_repeat 1 29 0 273 197 0 0 chrX 86250401 86250467 -90723673 + (CATA)n Simple_repeat Simple_repeat 3 68 0 2186 96 21 0 chrX 86250725 86251007 -90723133 + AluSc SINE Alu 1 288 -21 21 0 0 0 chrX 86251118 86251139 -90723001 + AT_rich Low_complexity Low_complexity 1 21 0 2233 145 22 25 chrX 86251301 86251709 -90722431 + L1PB4 LINE L1 5742 6148 -8 349 285 80 68 chrX 86251810 86252393 -90721747 - L1ME LINE L1 -314 5856 3440 478 299 15 34 chrX 86252475 86252679 -90721461 - LTR16C LTR ERVL -31 460 261 421 261 261 0 chrX 86252982 86253216 -90720924 - L1ME LINE L1 -2746 3400 3106 278 348 29 51 chrX 86253340 86253478 -90720662 + MLT1K LTR MaLR 106 240 -348 4986 139 8 2 chrX 86254776 86255581 -90718559 - L1MB1 LINE L1 0 6168 5360 2328 173 7 67 chrX 86255582 86256060 -90718080 + L1 LINE L1 4852 5296 -850 210 37 0 0 chrX 86256060 86256087 -90718053 + (GA)n Simple_repeat Simple_repeat 2 28 0 2328 173 7 67 chrX 86256087 86256147 -90717993 + L1 LINE L1 5296 5358 -788 402 292 56 39 chrX 86256456 86256634 -90717506 + MIR SINE MIR 5 185 -77 2116 199 24 65 chrX 86256709 86257251 -90716889 - MLT2B1 LTR ERVL 0 520 1 530 325 48 15 chrX 86258843 86259049 -90715091 + LTR16A LTR ERVL 16 228 -222 575 264 14 0 chrX 86259167 86259307 -90714833 + LTR16A LTR ERVL 309 450 0 440 209 110 28 chrX 86259348 86259530 -90714610 - L1ME4a LINE L1 -202 5919 5723 2138 236 71 20 chrX 86259536 86260173 -90713967 + L1MC4 LINE L1 7254 7922 -120 1877 149 33 0 chrX 86260170 86260648 -90713492 - L1P4 LINE L1 -699 6907 6415 * 20448 178 24 16 chrX 86261416 86267070 -90707070 - L1P4 LINE L1 -1343 6241 2 2243 96 7 0 chrX 86267769 86268061 -90706079 - AluSc SINE Alu -15 294 1 554 138 0 0 chrX 86268317 86268404 -90705736 + L1MC/D LINE L1 5701 5787 -546 1942 61 30 0 chrX 86268404 86268667 -90705473 - L1PA13 LINE L1 -2 6161 5891 32897 53 5 5 chrX 86268667 86273681 -90700459 - L1PA5 LINE L1 -4 6150 1141 462 263 83 0 chrX 86324037 86324193 -90649947 + MIR SINE MIR 94 262 0 319 307 88 29 chrX 86324210 86324347 -90649793 + MIR3 SINE MIR 64 208 0 405 285 104 7 chrX 86324776 86324920 -90649220 - MIR SINE MIR -56 206 49 429 320 88 13 chrX 86327218 86327446 -90646694 - MIR SINE MIR -8 254 10 417 39 0 0 chrX 86328013 86328064 -90646076 + (CA)n Simple_repeat Simple_repeat 1 51 0 504 249 122 27 chrX 86330531 86330752 -90643388 - MIR SINE MIR 0 262 21 190 73 49 0 chrX 86331016 86331057 -90643083 + (CAA)n Simple_repeat Simple_repeat 1 43 0 2402 80 0 7 chrX 86332459 86332759 -90641381 + AluSc SINE Alu 1 298 -11 2391 95 3 0 chrX 86334009 86334315 -90639825 - AluSp SINE Alu -6 307 1 406 233 17 52 chrX 86335660 86335832 -90638308 - HAL1b LINE L1 0 1348 1183 249 245 0 0 chrX 86335855 86335904 -90638236 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 233 236 14 0 chrX 86335891 86335963 -90638177 + (TA)n Simple_repeat Simple_repeat 2 74 0 * 299 225 165 46 chrX 86336026 86336189 -90637951 - HAL1b LINE L1 -238 1110 968 2377 197 32 81 chrX 86336189 86336916 -90637224 - LTR8 LTR ERV1 0 691 1 299 225 165 46 chrX 86336916 86336930 -90637210 - HAL1b LINE L1 -380 968 957 3429 154 54 11 chrX 86336930 86337598 -90636542 - LTR34 LTR ERV1 0 699 3 299 225 165 46 chrX 86337598 86337765 -90636375 - HAL1b LINE L1 -391 957 724 * 6567 206 19 12 chrX 86337762 86339358 -90634782 + L1MA1 LINE L1 2328 3934 -2212 6342 24 5 0 chrX 86339358 86340167 -90633973 + L1PA3 LINE L1 2330 3142 -3004 41230 30 21 1 chrX 86340168 86346199 -90627941 + L1HS LINE L1 2 6155 0 207 69 0 0 chrX 86346201 86346230 -90627910 + (A)n Simple_repeat Simple_repeat 1 29 0 18667 31 1 8 chrX 86346230 86349267 -90624873 + L1PA3 LINE L1 3122 6155 0 7339 164 14 7 chrX 86349267 86351049 -90623091 + L1MA1 LINE L1 3912 5700 -602 3167 117 46 8 chrX 86351050 86351570 -90622570 + L1MA1 LINE L1 5763 6302 0 3009 211 199 66 chrX 86352205 86352742 -90621398 - L1MC4 LINE L1 -5 8037 7573 6808 63 5 52 chrX 86352742 86353704 -90620436 + SVA Other Other 433 1324 -62 330 26 0 0 chrX 86353704 86353743 -90620397 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 6808 63 5 52 chrX 86353743 86353804 -90620336 + SVA Other Other 1324 1386 0 3009 211 199 66 chrX 86353804 86354438 -90619702 - L1MC4 LINE L1 -469 7573 7025 225 0 0 0 chrX 86354438 86354463 -90619677 + (TG)n Simple_repeat Simple_repeat 1 25 0 3009 211 199 66 chrX 86354463 86354667 -90619473 - L1MC4 LINE L1 -1017 7025 6850 302 45 23 0 chrX 86354667 86354711 -90619429 + (CA)n Simple_repeat Simple_repeat 2 46 0 3009 211 199 66 chrX 86354711 86354772 -90619368 - L1MC4 LINE L1 -1192 6850 6798 450 0 0 0 chrX 86354772 86354822 -90619318 + (TG)n Simple_repeat Simple_repeat 2 51 0 3009 211 199 66 chrX 86354822 86355239 -90618901 - L1MC4 LINE L1 -1244 6798 5907 1687 292 72 36 chrX 86355249 86355673 -90618467 - L1MC4 LINE L1 -801 5345 4938 198 103 0 0 chrX 86355673 86355702 -90618438 + (TA)n Simple_repeat Simple_repeat 1 29 0 1687 292 72 36 chrX 86355702 86356926 -90617214 - L1MC4 LINE L1 -1208 4938 4089 2494 114 8 13 chrX 86356926 86357303 -90616837 - THE1C LTR MaLR 0 375 1 1687 292 72 36 chrX 86357303 86357373 -90616767 - L1MC4 LINE L1 -2057 4089 4023 333 337 99 0 chrX 86357386 86357558 -90616582 - L2 LINE L2 -657 2657 2469 218 340 62 21 chrX 86357633 86357730 -90616410 + MIR SINE MIR 5 105 -157 207 69 0 0 chrX 86357901 86357930 -90616210 + (ATG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chrX 86358497 86358518 -90615622 + AT_rich Low_complexity Low_complexity 1 21 0 383 280 106 53 chrX 86360198 86360563 -90613577 + MLT1K LTR MaLR 168 588 0 31 0 0 0 chrX 86360805 86360836 -90613304 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chrX 86361501 86361533 -90612607 + AT_rich Low_complexity Low_complexity 1 32 0 966 291 114 12 chrX 86363246 86363676 -90610464 - ERVL LTR ERVL -259 5505 5032 2233 192 99 14 chrX 86363676 86364303 -90609837 + L1M3f LINE L1 679 1368 -4069 2293 168 11 5 chrX 86364303 86364738 -90609402 + L1MA4 LINE L1 5861 6298 -2 234 256 67 33 chrX 86365160 86365250 -90608890 + MER5A DNA MER1_type 94 186 -3 31 88 0 0 chrX 86365818 86365898 -90608242 + AT_rich Low_complexity Low_complexity 1 80 0 299 287 36 65 chrX 86366327 86366479 -90607661 - L1M4 LINE L1 -1029 5117 4973 761 256 67 0 chrX 86366479 86366674 -90607466 - MER63A DNA MER1_type -1 209 2 299 287 36 65 chrX 86366674 86366768 -90607372 - L1M4 LINE L1 -1173 4973 4878 1411 184 127 46 chrX 86366822 86367406 -90606734 - MER76 LTR ERV 0 688 1 810 300 52 32 chrX 86367581 86367928 -90606212 - L1MEd LINE L1 -5491 628 275 618 326 68 29 chrX 86367964 86368342 -90605798 - LTR16A LTR ERVL -51 399 4 1567 75 0 5 chrX 86368442 86368656 -90605484 - L1PA7 LINE L1 -1 6153 5941 710 258 29 42 chrX 86368738 86369192 -90604948 - LTR16A1 LTR ERVL 0 457 44 2273 93 0 10 chrX 86369281 86369592 -90604548 - AluSg SINE Alu -2 308 1 1982 150 3 89 chrX 86369733 86370114 -90604026 + MER7A DNA MER2_type 1 346 0 799 267 9 9 chrX 86370494 86370711 -90603429 - MER20 DNA MER1_type -2 217 1 29 0 0 0 chrX 86371650 86371679 -90602461 + AT_rich Low_complexity Low_complexity 1 29 0 248 0 0 0 chrX 86371798 86371829 -90602311 + HY3 scRNA scRNA 66 96 -5 302 344 15 38 chrX 86372055 86372186 -90601954 + MIR SINE MIR 17 144 -64 310 292 17 101 chrX 86372334 86372512 -90601628 - MER5A DNA MER1_type -6 183 21 475 275 34 24 chrX 86373260 86373467 -90600673 - L1ME3A LINE L1 -2 6160 5963 975 211 19 46 chrX 86373531 86373565 -90600575 - L1ME3A LINE L1 -214 5956 5923 1565 166 0 80 chrX 86373565 86373879 -90600261 + AluJb SINE Alu 1 289 -23 975 211 19 46 chrX 86373879 86374105 -90600035 - L1ME3A LINE L1 -247 5923 5703 303 164 55 0 chrX 86374115 86374170 -90599970 - MADE1 DNA Mariner 0 80 23 249 105 0 0 chrX 86374203 86374241 -90599899 - MADE1 DNA Mariner -42 38 1 920 257 82 14 chrX 86374259 86374860 -90599280 - L1ME3A LINE L1 -525 5637 4999 214 175 16 32 chrX 86377814 86377877 -90596263 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chrX 86377897 86377923 -90596217 + AT_rich Low_complexity Low_complexity 1 26 0 314 202 0 24 chrX 86377997 86378081 -90596059 + (CATA)n Simple_repeat Simple_repeat 3 84 0 5029 177 16 33 chrX 86379352 86380340 -90593800 - L1MB2 LINE L1 0 6171 5220 1527 225 19 0 chrX 86380340 86380651 -90593489 - 7SLRNA srpRNA srpRNA -3 317 1 5029 177 16 33 chrX 86380651 86381018 -90593122 - L1MB2 LINE L1 -951 5220 4848 715 222 0 0 chrX 86381032 86381167 -90592973 + FLAM_A SINE Alu 8 142 0 4895 216 33 21 chrX 86381222 86382494 -90591646 - L1MB2 LINE L1 -1298 4848 3562 5124 25 3 2 chrX 86382501 86383106 -90591034 - L1PA3 LINE L1 -3 6152 5547 3472 27 0 0 chrX 86383106 86383519 -90590621 + L1P LINE L1 1579 1991 -4155 278 232 0 0 chrX 86383518 86383574 -90590566 - L1MB2 LINE L1 -2576 3570 3515 * 396 0 0 0 chrX 86383580 86383624 -90590516 + (TG)n Simple_repeat Simple_repeat 2 45 0 3986 185 67 14 chrX 86383659 86384259 -90589881 - L1MB1 LINE L1 -38 5954 5387 1875 141 43 35 chrX 86384259 86384629 -90589511 - THE1C LTR MaLR -2 373 1 3986 185 67 14 chrX 86384629 86385230 -90588910 - L1MB1 LINE L1 -605 5387 4689 558 227 40 20 chrX 86385234 86385548 -90588592 - L1MB1 LINE L1 -3851 2119 1686 * 1891 235 54 27 chrX 86385547 86386367 -90587773 - L1MB1 LINE L1 -4522 1369 388 608 281 54 72 chrX 86386439 86386830 -90587310 - L1MB1 LINE L1 -5503 388 5 2073 141 26 61 chrX 86386846 86387273 -90586867 - L1MA8 LINE L1 -4 6287 5876 645 110 12 147 chrX 86387313 86387476 -90586664 - L1MA8 LINE L1 -424 5888 5748 597 311 121 17 chrX 86387588 86388061 -90586079 - L1ME3 LINE L1 -287 5875 5354 1514 183 82 92 chrX 86388636 86388977 -90585163 + MSTD LTR MaLR 1 339 -57 206 93 0 23 chrX 86388977 86389020 -90585120 + (TA)n Simple_repeat Simple_repeat 2 43 0 1514 183 82 92 chrX 86389020 86389078 -90585062 + MSTD LTR MaLR 339 396 0 308 280 85 8 chrX 86389349 86389467 -90584673 + L1M4 LINE L1 4117 4243 -1903 365 212 40 32 chrX 86389468 86389663 -90584477 - LTR37B LTR ERV1 -3 464 222 684 180 31 12 chrX 86389663 86389824 -90584316 + L1 LINE L1 2256 2419 -3727 20501 91 8 5 chrX 86389824 86392276 -90581864 - L1PA7 LINE L1 -6 6148 3682 405 0 0 0 chrX 86392276 86392321 -90581819 + (TG)n Simple_repeat Simple_repeat 2 46 0 20501 91 8 5 chrX 86392321 86393611 -90580529 - L1PA7 LINE L1 -2472 3682 2397 13937 171 123 5 chrX 86393611 86393995 -90580145 - L1P LINE L1 -868 5278 4940 2459 128 3 11 chrX 86393995 86394362 -90579778 - THE1B LTR MaLR 0 364 1 13937 171 123 5 chrX 86394362 86396913 -90577227 - L1P LINE L1 -1206 4940 1999 5118 258 34 30 chrX 86396952 86398685 -90575455 - L1PA12 LINE L1 -4782 2802 2 270 246 18 88 chrX 86398689 86398803 -90575337 + L1MC4 LINE L1 7811 7916 -126 232 238 40 0 chrX 86398808 86398909 -90575231 + (TA)n Simple_repeat Simple_repeat 2 106 0 27 29 0 0 chrX 86398986 86399020 -90575120 + AT_rich Low_complexity Low_complexity 1 34 0 1541 265 31 134 chrX 86399370 86400019 -90574121 - MLT1G LTR MaLR -13 577 1 209 254 16 48 chrX 86400225 86400288 -90573852 + MER5A DNA MER1_type 93 153 -36 * 417 268 32 96 chrX 86400286 86400443 -90573697 + MER5A DNA MER1_type 40 186 -3 229 148 37 0 chrX 86400449 86400503 -90573637 + HSMAR1 DNA Mariner 1232 1287 0 190 294 12 82 chrX 86400566 86400651 -90573489 + MER5A DNA MER1_type 110 188 -1 844 201 19 6 chrX 86400700 86400859 -90573281 + MER5A DNA MER1_type 29 189 0 371 224 103 45 chrX 86401905 86402061 -90572079 + L1ME4a LINE L1 5943 6107 -14 366 122 257 0 chrX 86402158 86402232 -90571908 + MER5A DNA MER1_type 14 106 -83 207 152 0 0 chrX 86403095 86403141 -90570999 + (TG)n Simple_repeat Simple_repeat 1 46 0 229 242 65 0 chrX 86403178 86403240 -90570900 - MER5A DNA MER1_type 0 189 124 617 354 16 48 chrX 86405079 86405390 -90568750 - L3 LINE CR1 -112 1465 1165 457 243 50 57 chrX 86406492 86406632 -90567508 - L2 LINE L2 0 3272 3134 390 367 58 0 chrX 86406881 86407020 -90567120 + L2 LINE L2 3126 3272 0 22 35 0 0 chrX 86407255 86407284 -90566856 + AT_rich Low_complexity Low_complexity 1 29 0 279 79 0 0 chrX 86408779 86408817 -90565323 + (TG)n Simple_repeat Simple_repeat 1 38 0 218 374 61 0 chrX 86410166 86410265 -90563875 + L2 LINE L2 2943 3047 -225 223 306 129 0 chrX 86410926 86411011 -90563129 + L2 LINE L2 2927 3022 -250 1409 187 44 54 chrX 86411023 86411338 -90562802 - AluJo SINE Alu 0 312 1 231 377 164 0 chrX 86411619 86411741 -90562399 + L2 LINE L2 3122 3263 -9 211 349 64 46 chrX 86411786 86411895 -90562245 + L2 LINE L2 3182 3292 -21 1927 119 0 11 chrX 86411917 86412210 -90561930 - AluSg SINE Alu 0 306 17 24 77 0 0 chrX 86413851 86413903 -90560237 + AT_rich Low_complexity Low_complexity 1 52 0 185 326 84 21 chrX 86413938 86414033 -90560107 + MIR SINE MIR 39 139 -69 324 0 0 0 chrX 86414490 86414526 -90559614 + (CA)n Simple_repeat Simple_repeat 1 36 0 1697 209 29 54 chrX 86416457 86416935 -90557205 - MLT1C LTR MaLR -1 466 1 1649 198 99 8 chrX 86417224 86417587 -90556553 - MSTD LTR MaLR 0 396 1 47 44 0 0 chrX 86417926 86417994 -90556146 + AT_rich Low_complexity Low_complexity 1 68 0 3777 223 33 9 chrX 86418184 86419031 -90555109 + L1PB1 LINE L1 22 888 -6677 13971 181 24 19 chrX 86419034 86423254 -90550886 + L1PB1 LINE L1 3327 7570 0 21 0 0 0 chrX 86423259 86423280 -90550860 + AT_rich Low_complexity Low_complexity 1 21 0 789 263 0 5 chrX 86423298 86423522 -90550618 + L1 LINE L1 2376 2598 -3548 * 12924 182 49 9 chrX 86423520 86426866 -90547274 - L1 LINE L1 -990 6575 3092 6036 199 19 31 chrX 86426867 86428044 -90546096 - L1 LINE L1 -6295 1270 108 207 0 0 0 chrX 86428044 86428067 -90546073 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 6036 199 19 31 chrX 86428067 86428160 -90545980 - L1 LINE L1 -7457 108 15 222 389 87 19 chrX 86428249 86428514 -90545626 - L2 LINE L2 -469 2845 2563 1765 230 108 17 chrX 86428827 86429336 -90544804 - L1PBa LINE L1 -6052 811 231 288 0 0 0 chrX 86429336 86429368 -90544772 + (TG)n Simple_repeat Simple_repeat 2 33 0 1765 230 108 17 chrX 86429368 86429498 -90544642 - L1PBa LINE L1 -6632 231 114 550 208 84 19 chrX 86429505 86429659 -90544481 + L1MA8 LINE L1 4849 5012 -1134 225 0 0 0 chrX 86432271 86432296 -90541844 + (A)n Simple_repeat Simple_repeat 1 25 0 3484 217 54 14 chrX 86432296 86433477 -90540663 + L1MA8 LINE L1 5016 6251 -40 255 209 39 71 chrX 86433910 86434092 -90540048 + (TTAA)n Simple_repeat Simple_repeat 4 179 0 36 53 0 0 chrX 86434234 86434291 -90539849 + AT_rich Low_complexity Low_complexity 1 57 0 228 250 0 0 chrX 86434378 86434438 -90539702 + A-rich Low_complexity Low_complexity 1 60 0 22 35 0 0 chrX 86434582 86434611 -90539529 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 86435433 86435465 -90538675 + AT_rich Low_complexity Low_complexity 1 32 0 5673 290 80 21 chrX 86435702 86435765 -90538375 - L2 LINE L2 -5 3308 3250 285 29 0 0 chrX 86435765 86435799 -90538341 + (TA)n Simple_repeat Simple_repeat 1 34 0 5673 290 80 21 chrX 86435799 86438097 -90536043 - L2 LINE L2 -63 3250 792 3017 96 0 17 chrX 86438097 86438515 -90535625 + MLT2A1 LTR ERVL 1 411 -33 216 148 49 0 chrX 86438532 86438593 -90535547 + (TA)n Simple_repeat Simple_repeat 1 64 0 327 148 0 0 chrX 86438600 86438654 -90535486 + MLT2A1 LTR ERVL 391 444 0 1160 94 0 44 chrX 86438656 86438836 -90535304 + HERVL-A1-A1 LTR ERVL 4 175 -5479 * 25736 78 5 5 chrX 86438832 86442166 -90531974 + HERVL-A1-A1 LTR ERVL 104 3436 -2218 953 73 0 8 chrX 86442173 86442296 -90531844 - HERVL LTR ERVL -1240 4414 4293 * 16907 76 6 19 chrX 86442282 86444528 -90529612 + HERVL-A1-A1 LTR ERVL 3437 5654 0 3238 62 55 0 chrX 86444528 86444912 -90529228 + MLT2A1 LTR ERVL 1 411 -33 255 31 0 0 chrX 86444912 86444944 -90529196 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 3238 62 55 0 chrX 86444944 86444980 -90529160 + MLT2A1 LTR ERVL 411 444 0 699 268 63 29 chrX 86444980 86445288 -90528852 - L2 LINE L2 -2518 796 408 2048 159 122 8 chrX 86445297 86445674 -90528466 - MSTA LTR MaLR -1 427 8 1837 165 49 32 chrX 86445674 86446043 -90528097 + THE1C LTR MaLR 1 375 0 7920 139 21 66 chrX 86446061 86447606 -90526534 - MSTA-int LTR MaLR -6 1574 3 21 0 0 0 chrX 86448256 86448277 -90525863 + AT_rich Low_complexity Low_complexity 1 21 0 472 313 112 21 chrX 86449317 86449550 -90524590 - MIR SINE MIR -8 254 1 309 235 265 22 chrX 86450674 86450810 -90523330 + MIR SINE MIR 13 181 -81 211 249 112 112 chrX 86451889 86452342 -90521798 - L2 LINE L2 -98 3174 2708 227 330 0 40 chrX 86453240 86453340 -90520800 - MER20B DNA MER1_type -604 179 84 470 233 38 38 chrX 86453921 86454080 -90520060 + MIR SINE MIR 34 192 -70 388 206 0 79 chrX 86454412 86454538 -90519602 - MIR SINE MIR -87 175 60 643 235 54 54 chrX 86454575 86454796 -90519344 - L1MC4 LINE L1 -1 8041 7821 3073 220 75 57 chrX 86454806 86455498 -90518642 - L1MC4 LINE L1 -274 7768 7053 642 104 0 0 chrX 86455498 86455594 -90518546 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 3073 220 75 57 chrX 86455594 86455852 -90518288 - L1MC4 LINE L1 -989 7053 6801 223 323 126 24 chrX 86456306 86456433 -90517707 - MIR SINE MIR -74 188 49 623 236 93 0 chrX 86456682 86456843 -90517297 - MER5B DNA MER1_type -2 176 1 1594 188 13 19 chrX 86457018 86457326 -90516814 - AluJb SINE Alu -4 308 3 22 35 0 0 chrX 86457336 86457365 -90516775 + AT_rich Low_complexity Low_complexity 1 29 0 1944 145 36 3 chrX 86457630 86457962 -90516178 + MER2 DNA MER2_type 1 343 -1 247 266 0 0 chrX 86457981 86458045 -90516095 - L2 LINE L2 -259 3054 2991 230 238 50 89 chrX 86458820 86458921 -90515219 - L2 LINE L2 -39 3233 3137 191 307 13 13 chrX 86459122 86459197 -90514943 - L2 LINE L2 -45 3268 3194 606 301 12 24 chrX 86460732 86460978 -90513162 - MIR SINE MIR -1 261 19 285 331 55 24 chrX 86461435 86461562 -90512578 + MIR SINE MIR 22 152 -110 298 163 0 0 chrX 86461720 86461769 -90512371 - L2 LINE L2 -2 3311 3263 1003 316 147 22 chrX 86462288 86463177 -90510963 + L3 LINE CR1 576 1575 -2 616 242 28 51 chrX 86464363 86464541 -90509599 - MIR3 SINE MIR -15 193 20 183 261 62 0 chrX 86464995 86465060 -90509080 + L2 LINE L2 3031 3099 -173 454 195 121 40 chrX 86465600 86465749 -90508391 + MIR SINE MIR 31 191 -71 1790 149 74 31 chrX 86465766 86466089 -90508051 + MER1B DNA MER1_type 1 337 0 1668 191 0 35 chrX 86466433 86466748 -90507392 + AluJo SINE Alu 1 304 -8 2893 142 73 10 chrX 86516997 86518544 -90455596 - L1PBa LINE L1 -5075 1788 4 1836 184 25 6 chrX 86518732 86519090 -90455050 + MLT1A1 LTR MaLR 1 365 0 2006 154 30 9 chrX 86519090 86519418 -90454722 + MER1B DNA MER1_type 1 337 0 26 82 0 0 chrX 86519442 86519503 -90454637 + AT_rich Low_complexity Low_complexity 1 61 0 540 308 72 21 chrX 86519743 86519980 -90454160 + MIR SINE MIR 1 249 -13 22 56 0 0 chrX 86520455 86520491 -90453649 + AT_rich Low_complexity Low_complexity 1 36 0 1077 104 6 22 chrX 86521534 86521717 -90452423 + L1MA3 LINE L1 6125 6304 -1 604 290 108 49 chrX 86522053 86522440 -90451700 - LTR33 LTR ERVL 0 521 58 2112 117 3 25 chrX 86522440 86522757 -90451383 + AluSx SINE Alu 1 310 -2 604 290 108 49 chrX 86522757 86522819 -90451321 - LTR33 LTR ERVL -463 58 1 323 280 175 6 chrX 86524420 86524583 -90449557 - MIR3 SINE MIR -13 195 5 2144 124 3 0 chrX 86526881 86527187 -90446953 + AluSq SINE Alu 1 307 -6 792 226 110 138 chrX 86527350 86527941 -90446199 - MLT1H1 LTR MaLR 0 555 1 275 278 56 0 chrX 86527949 86528039 -90446101 + L2 LINE L2 3160 3254 -18 5269 129 5 21 chrX 86528589 86529393 -90444747 + MER54B LTR ERVL 1 791 -2 487 277 133 21 chrX 86529573 86529761 -90444379 + MIR SINE MIR 48 256 -6 397 270 270 0 chrX 86529794 86529946 -90444194 + MIR SINE MIR 61 253 -9 1902 96 0 60 chrX 86530292 86530574 -90443566 + AluSx SINE Alu 39 303 -9 664 315 83 48 chrX 86531151 86531526 -90442614 + L2 LINE L2 2926 3313 0 21 0 0 0 chrX 86531727 86531748 -90442392 + AT_rich Low_complexity Low_complexity 1 21 0 442 300 62 8 chrX 86532033 86532163 -90441977 + MIR SINE MIR 8 144 -118 207 0 0 0 chrX 86532167 86532190 -90441950 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2191 111 3 0 chrX 86532190 86532483 -90441657 - AluSx SINE Alu -18 294 1 2435 128 15 5 chrX 86532758 86533157 -90440983 + MER57A LTR ERV1 1 403 0 2084 179 13 3 chrX 86533197 86533583 -90440557 + MLT1B LTR MaLR 1 390 0 331 338 117 21 chrX 86533715 86533860 -90440280 + MIR3 SINE MIR 22 180 -28 185 304 0 0 chrX 86533907 86533953 -90440187 - MIR SINE MIR -130 78 33 612 161 0 0 chrX 86534003 86534096 -90440044 - FRAM SINE Alu -25 151 59 748 292 11 82 chrX 86534845 86535126 -90439014 - MIR SINE MIR 0 262 2 23 54 0 0 chrX 86535854 86535891 -90438249 + AT_rich Low_complexity Low_complexity 1 37 0 2038 115 29 23 chrX 86536380 86536759 -90437381 + Tigger3(Golem) DNA MER2_type 1 3028 -1 1758 268 118 6 chrX 86536942 86537621 -90436519 + L1ME3A LINE L1 5409 6163 -7 31 0 0 0 chrX 86537844 86537875 -90436265 + AT_rich Low_complexity Low_complexity 1 31 0 242 194 14 28 chrX 86538425 86538497 -90435643 - L1PA13 LINE L1 -2 6161 6091 399 21 0 0 chrX 86540026 86540074 -90434066 + (CA)n Simple_repeat Simple_repeat 1 48 0 833 254 53 20 chrX 86540951 86541254 -90432886 - MER46C DNA MER2_type -25 313 1 523 165 65 51 chrX 86541302 86541526 -90432614 - LTR48 LTR ERV1 0 722 566 290 209 75 0 chrX 86541546 86541613 -90432527 - LTR48 LTR ERV1 -363 424 353 213 296 11 23 chrX 86541998 86542086 -90432054 + GA-rich Low_complexity Low_complexity 1 87 0 279 198 11 110 chrX 86542127 86542218 -90431922 - MER39 LTR ERV1 -562 82 1 2177 82 0 21 chrX 86542775 86543066 -90431074 + AluSc SINE Alu 1 285 -24 2106 121 3 3 chrX 86543781 86544079 -90430061 - AluSq SINE Alu -15 298 1 1021 149 0 11 chrX 86545782 86545957 -90428183 - MER31A LTR ERV1 -4 481 309 199 358 0 32 chrX 86546148 86546243 -90427897 + MIR SINE MIR 45 136 -126 470 243 69 28 chrX 86546304 86546448 -90427692 - MIR SINE MIR -32 230 81 232 288 30 0 chrX 86546828 86546894 -90427246 + L2 LINE L2 3241 3308 -5 798 224 55 51 chrX 86548110 86548364 -90425776 - MER112 DNA MER1_type -1 255 1 333 47 0 0 chrX 86548764 86548807 -90425333 + (CA)n Simple_repeat Simple_repeat 2 44 0 294 273 0 0 chrX 86550076 86550142 -90423998 + GA-rich Low_complexity Low_complexity 1 66 0 2358 64 0 10 chrX 86552682 86552978 -90421162 + AluY SINE Alu 1 293 -18 759 286 19 23 chrX 86553125 86553387 -90420753 + MIR SINE MIR 2 262 0 371 357 14 7 chrX 86554147 86554290 -90419850 + MIR SINE MIR 52 195 -67 1024 267 129 19 chrX 86554318 86554619 -90419521 - MLT1G1 LTR MaLR 0 595 329 510 61 0 0 chrX 86554619 86554685 -90419455 + (GA)n Simple_repeat Simple_repeat 2 67 0 1024 267 129 19 chrX 86554685 86554835 -90419305 - MLT1G1 LTR MaLR -266 329 1 282 298 78 50 chrX 86555281 86555422 -90418718 - MIR SINE MIR -112 150 6 206 431 52 0 chrX 86557997 86558150 -90415990 + L2 LINE L2 3112 3272 0 214 321 101 9 chrX 86558318 86558427 -90415713 - L2 LINE L2 -1365 1949 1831 451 309 120 5 chrX 86558496 86558687 -90415453 + MIR SINE MIR 32 244 -18 2105 133 3 0 chrX 86559434 86559736 -90414404 + AluSx SINE Alu 1 303 -9 2223 238 52 7 chrX 86559775 86560335 -90413805 - L1ME1 LINE L1 -6 6160 5576 * 4983 156 34 59 chrX 86560333 86561275 -90412865 + L1MA9 LINE L1 5256 6170 -142 207 100 0 0 chrX 86561275 86561305 -90412835 + (CA)n Simple_repeat Simple_repeat 1 30 0 4983 156 34 59 chrX 86561305 86561424 -90412716 + L1MA9 LINE L1 6170 6290 -22 670 286 25 37 chrX 86561465 86561706 -90412434 - L1ME LINE L1 -5589 481 244 1384 231 31 96 chrX 86561960 86562500 -90411640 - MLT1D LTR MaLR 0 505 1 351 307 146 25 chrX 86562722 86562996 -90411144 - L3 LINE CR1 -749 828 522 384 147 0 0 chrX 86563072 86563140 -90411000 - L1PB4 LINE L1 0 6156 6089 482 222 20 0 chrX 86563140 86563239 -90410901 - L1MC2 LINE L1 -38 6306 6206 1453 210 0 0 chrX 86563244 86563515 -90410625 + MLT1B LTR MaLR 1 271 -119 1897 128 54 3 chrX 86563520 86563943 -90410197 + AluSq SINE Alu 1 438 0 1691 210 18 6 chrX 86563985 86564319 -90409821 + MLT1A2 LTR MaLR 26 363 -11 746 142 0 17 chrX 86564318 86564438 -90409702 + MLT1B LTR MaLR 273 390 0 * 4285 188 39 29 chrX 86564469 86565119 -90409021 - L1MC2 LINE L1 -148 6196 5554 2385 140 89 2 chrX 86565119 86565534 -90408606 - LTR47A LTR ERVL -1 451 1 4285 188 39 29 chrX 86565534 86565872 -90408268 - L1MC2 LINE L1 -790 5554 5221 237 33 0 0 chrX 86565872 86565902 -90408238 + (TC)n Simple_repeat Simple_repeat 1 30 0 1733 151 11 7 chrX 86565903 86566187 -90407953 - AluJb SINE Alu -12 300 16 4285 188 39 29 chrX 86566187 86566482 -90407658 - L1MC2 LINE L1 -1122 5222 4906 5196 142 28 8 chrX 86566512 86567603 -90406537 - L1PB3 LINE L1 -8 6146 5031 * 26086 138 13 14 chrX 86567599 86572737 -90401403 - L1PA8A LINE L1 -4 6843 1634 204 111 0 0 chrX 86572737 86572773 -90401367 + (TTG)n Simple_repeat Simple_repeat 1 36 0 26086 138 13 14 chrX 86572773 86573554 -90400586 - L1PA8A LINE L1 -5213 1634 854 1727 135 8 15 chrX 86573598 86573864 -90400276 - L1PA8A LINE L1 -5423 853 590 * 4244 212 35 19 chrX 86573861 86576260 -90397880 - L1PBa LINE L1 -2684 4178 1687 1023 300 42 45 chrX 86576254 86576850 -90397290 - L1PA8A LINE L1 -6267 596 3 * 212 86 29 0 chrX 86576859 86576894 -90397246 + (CAA)n Simple_repeat Simple_repeat 2 37 0 885 142 0 15 chrX 86576930 86577064 -90397076 + FLAM_C SINE Alu 1 132 -1 4868 241 41 11 chrX 86577070 86578472 -90395668 - L1M4 LINE L1 -1241 4905 3463 960 71 0 0 chrX 86578592 86578718 -90395422 - L1MA1 LINE L1 0 6302 6177 348 243 154 36 chrX 86578807 86578970 -90395170 + MLT1H LTR MaLR 415 548 -1 557 352 65 47 chrX 86578994 86579483 -90394657 + L2 LINE L2 317 814 -2500 1620 342 97 18 chrX 86579485 86580631 -90393509 + L2 LINE L2 2073 3312 -1 395 306 141 67 chrX 86581601 86582457 -90391683 + L1ME4a LINE L1 4300 5219 -927 303 293 48 39 chrX 86582481 86582689 -90391451 + L1ME4a LINE L1 5255 5464 -2344 697 270 64 26 chrX 86582750 86583017 -90391123 + L1ME4a LINE L1 5584 5860 -261 262 237 26 13 chrX 86583076 86583152 -90390988 + L1ME4a LINE L1 5963 6039 -82 293 314 16 48 chrX 86583205 86583329 -90390811 - MIR SINE MIR -56 206 87 249 204 0 20 chrX 86583330 86583379 -90390761 + L2 LINE L2 3264 3311 -2 202 167 83 21 chrX 86583863 86583911 -90390229 + MIR SINE MIR 201 251 -11 19258 199 28 32 chrX 86584341 86586193 -90387947 - L1MA1 LINE L1 0 7721 5863 5376 27 3 0 chrX 86586193 86586820 -90387320 - L1PA4 LINE L1 -2 6153 5525 19258 199 28 32 chrX 86586820 86588513 -90385627 - L1MA1 LINE L1 -1858 5863 4165 7827 16 0 0 chrX 86588513 86589884 -90384256 - L1PA3 LINE L1 -3 6152 4784 19258 199 28 32 chrX 86589884 86594094 -90380046 - L1MA1 LINE L1 -3556 4165 37 1321 182 71 83 chrX 86594216 86594611 -90379529 + MLT1B LTR MaLR 1 390 0 270 270 153 18 chrX 86595574 86595685 -90378455 - L2 LINE L2 -2 3311 3186 1168 191 28 32 chrX 86595877 86596197 -90377943 - MER33 DNA MER1_type -22 302 1 273 264 217 9 chrX 86596519 86596625 -90377515 + MIR SINE MIR 24 151 -111 1013 140 17 2 chrX 86596625 86596867 -90377273 + AluSx SINE Alu 1 294 -18 238 177 65 0 chrX 86596903 86596965 -90377175 + L1MC4 LINE L1 6638 6703 -1339 34 24 0 0 chrX 86597033 86597074 -90377066 + AT_rich Low_complexity Low_complexity 1 41 0 216 319 11 0 chrX 86597596 86597687 -90376453 + (CA)n Simple_repeat Simple_repeat 2 93 0 253 311 87 29 chrX 86598282 86598385 -90375755 + MIR SINE MIR 2 110 -152 227 222 0 0 chrX 86598436 86598481 -90375659 + (TTA)n Simple_repeat Simple_repeat 2 46 0 432 217 70 0 chrX 86598582 86598697 -90375443 + L1MC4 LINE L1 7920 8042 0 28 29 0 0 chrX 86601085 86601120 -90373020 + AT_rich Low_complexity Low_complexity 1 35 0 239 297 148 8 chrX 86601220 86601348 -90372792 - L2 LINE L2 -534 2780 2635 2039 244 162 11 chrX 86601365 86602200 -90371940 + Zaphod DNA AcHobo 7 967 -3064 4309 119 6 11 chrX 86602239 86602896 -90371244 - L1PA16 LINE L1 -9 6157 5504 423 103 0 0 chrX 86602899 86602967 -90371173 - L1PA16 LINE L1 -740 5426 5359 474 214 0 10 chrX 86602967 86603065 -90371075 + MER4A LTR ERV1 2 98 -566 * 1492 163 8 76 chrX 86603061 86603436 -90370704 + MER4A LTR ERV1 257 664 0 982 181 20 0 chrX 86603436 86603640 -90370500 - L1P LINE L1 -783 5363 5156 16509 178 56 12 chrX 86603643 86606241 -90367899 + L1PA14 LINE L1 3 2485 -5114 2082 117 0 30 chrX 86606241 86606583 -90367557 + AluSx SINE Alu 2 312 0 16509 178 56 12 chrX 86606583 86611469 -90362671 + L1PA14 LINE L1 2485 7590 -9 4053 239 16 2 chrX 86611482 86612509 -90361631 - L1P LINE L1 -981 5165 4125 1741 204 45 9 chrX 86612534 86612956 -90361184 + Zaphod DNA AcHobo 3595 4031 0 3187 207 48 46 chrX 86613038 86614110 -90360030 - L1ME2 LINE L1 -13 6151 5083 2337 93 3 0 chrX 86614110 86614411 -90359729 + AluSp SINE Alu 1 302 -11 3187 207 48 46 chrX 86614411 86614454 -90359686 - L1ME2 LINE L1 -1081 5083 5042 1855 141 9 30 chrX 86614456 86614789 -90359351 - L1MC1 LINE L1 0 6333 6008 231 284 42 32 chrX 86614867 86614962 -90359178 - MIR SINE MIR -123 139 44 234 261 15 0 chrX 86615218 86615283 -90358857 + CT-rich Low_complexity Low_complexity 3 68 0 4146 142 25 3 chrX 86615307 86616002 -90358138 - L1MC1 LINE L1 -304 6029 5320 242 90 15 45 chrX 86616039 86616106 -90358034 + (TATAA)n Simple_repeat Simple_repeat 5 69 0 2962 212 30 57 chrX 86616618 86617817 -90356323 - L1MB4 LINE L1 -27 6153 4992 203 171 66 26 chrX 86617862 86617938 -90356202 + (TATATG)n Simple_repeat Simple_repeat 5 83 0 1279 184 82 121 chrX 86619107 86619147 -90354993 + MSTD LTR MaLR 1 41 -355 2639 151 9 2 chrX 86619147 86619585 -90354555 + L1PA16 LINE L1 5717 6157 -9 1279 184 82 121 chrX 86619585 86619956 -90354184 + MSTD LTR MaLR 41 396 0 339 208 250 0 chrX 86620044 86620164 -90353976 + MER103 DNA DNA 12 161 -5 187 365 29 19 chrX 86620653 86620757 -90353383 + L2 LINE L2 2398 2502 -812 288 0 0 0 chrX 86622096 86622128 -90352012 + (TG)n Simple_repeat Simple_repeat 2 33 0 301 351 45 98 chrX 86623094 86623470 -90350670 - L2 LINE L2 -1 3271 2916 258 298 69 38 chrX 86623540 86623671 -90350469 - MER5B DNA MER1_type -37 141 7 491 267 147 7 chrX 86623684 86623834 -90350306 - MER5A DNA MER1_type -1 188 18 433 327 93 70 chrX 86623872 86623935 -90350205 - L2 LINE L2 -568 2746 2686 2008 125 7 0 chrX 86623935 86624256 -90349884 + AluSx SINE Alu 4 326 0 433 327 93 70 chrX 86624256 86624592 -90349548 - L2 LINE L2 -628 2686 2321 2035 183 24 40 chrX 86624592 86625013 -90349127 - MLT2D LTR ERVL 0 414 1 433 327 93 70 chrX 86625013 86625308 -90348832 - L2 LINE L2 -993 2321 2034 195 270 23 132 chrX 86625306 86625389 -90348751 + L2 LINE L2 2440 2496 -818 * 2115 128 18 15 chrX 86625389 86625725 -90348415 + MER1B DNA MER1_type 1 337 0 195 270 23 132 chrX 86625725 86625815 -90348325 + L2 LINE L2 2496 2594 -720 637 204 23 0 chrX 86625864 86625996 -90348144 + MLT1C-int LTR MaLR 1237 1371 0 1169 229 36 24 chrX 86626002 86626407 -90347733 + MLT1C LTR MaLR 7 390 0 195 382 40 7 chrX 86626413 86626565 -90347575 + L2 LINE L2 2716 2872 -442 547 250 9 66 chrX 86626635 86626847 -90347293 + L2 LINE L2 3114 3313 0 885 118 7 0 chrX 86627539 86627675 -90346465 - L1PB2 LINE L1 -3 6148 6012 2717 261 46 17 chrX 86627675 86628737 -90345403 - L1MEc LINE L1 -4109 2287 1192 10648 19 0 0 chrX 86628746 86629982 -90344158 - L1HS LINE L1 -1481 4665 3430 7902 18 1 0 chrX 86629977 86631489 -90342651 + L1HS LINE L1 4641 6153 -2 * 1256 206 127 16 chrX 86631505 86631947 -90342193 - L1MEc LINE L1 -5222 1174 684 1560 226 45 8 chrX 86631988 86632364 -90341776 + MLT1C LTR MaLR 54 443 -24 2167 165 3 3 chrX 86632552 86632915 -90341225 - Tigger1 DNA MER2_type 0 2418 2056 18016 179 24 14 chrX 86633314 86634386 -90339754 - L1M1 LINE L1 -4200 3365 2306 2066 119 4 0 chrX 86634386 86634663 -90339477 - AluSp SINE Alu -17 296 19 18016 179 24 14 chrX 86634663 86636906 -90337234 - L1M1 LINE L1 -5259 2306 15 12445 155 12 10 chrX 86636909 86637691 -90336449 - Tigger1 DNA MER2_type -329 2089 1310 2454 76 0 10 chrX 86637691 86638005 -90336135 + AluY SINE Alu 1 311 0 12445 155 12 10 chrX 86638005 86639305 -90334835 - Tigger1 DNA MER2_type -1108 1310 2 242 263 0 0 chrX 86639488 86639545 -90334595 + MIR SINE MIR 169 225 -37 1835 297 64 28 chrX 86639701 86640392 -90333748 - L2 LINE L2 -338 2976 2261 543 269 93 19 chrX 86640412 86640628 -90333512 - L2 LINE L2 -1262 2052 1821 2141 192 35 66 chrX 86640644 86641216 -90332924 - MLT2B3 LTR ERVL 0 554 1 260 167 15 45 chrX 86641343 86641409 -90332731 + L1MC4a LINE L1 7223 7286 -522 2010 213 18 56 chrX 86641410 86642020 -90332120 + L1MC4 LINE L1 7456 8042 0 395 257 107 0 chrX 86642020 86642160 -90331980 - L2 LINE L2 -1482 1832 1678 438 266 14 103 chrX 86642186 86642400 -90331740 - MIR SINE MIR -2 260 66 197 241 19 0 chrX 86642397 86642451 -90331689 - L2 LINE L2 -1618 1696 1642 * 2289 140 75 8 chrX 86642453 86642854 -90331286 - MSTA LTR MaLR 0 428 1 9058 170 51 1 chrX 86642858 86644425 -90329715 - MSTA-int LTR MaLR -5 1646 1 2795 120 26 2 chrX 86644425 86644843 -90329297 - MSTA LTR MaLR 0 428 1 2314 278 43 14 chrX 86644845 86645568 -90328572 - L2 LINE L2 -1911 1403 660 615 289 226 44 chrX 86645597 86646215 -90327925 - L2 LINE L2 0 3313 2586 792 216 0 0 chrX 86646545 86646693 -90327447 - FRAM SINE Alu -12 164 17 649 227 0 31 chrX 86646997 86647160 -90326980 + L1PB4 LINE L1 5999 6156 0 335 345 54 7 chrX 86648195 86648343 -90325797 + MIR3 SINE MIR 16 170 -38 1729 130 76 0 chrX 86648721 86648998 -90325142 - AluSx SINE Alu -14 298 1 592 215 12 6 chrX 86649738 86649901 -90324239 + CT-rich Low_complexity Low_complexity 3 166 0 234 111 0 0 chrX 86650344 86650389 -90323751 - LTR66 LTR ERVL -172 438 394 1684 218 22 76 chrX 86650395 86650896 -90323244 - MLT2B1 LTR ERVL -40 480 7 185 294 59 15 chrX 86650922 86650990 -90323150 - MIR SINE MIR -73 189 119 712 291 64 10 chrX 86650995 86651198 -90322942 - MIR SINE MIR -34 228 15 183 74 0 0 chrX 86651412 86651422 -90322718 + (TAAAAA)n Simple_repeat Simple_repeat 2 11 -17 2383 72 0 31 chrX 86651422 86651742 -90322398 + AluY SINE Alu 1 310 -1 183 74 0 0 chrX 86651742 86651758 -90322382 + (TAAAAA)n Simple_repeat Simple_repeat 10 28 0 271 282 73 27 chrX 86652471 86652581 -90321559 + L1M4c LINE L1 550 664 -5720 384 287 26 5 chrX 86652600 86652770 -90321370 + L1M4c LINE L1 777 1280 -5023 623 150 9 0 chrX 86652848 86652961 -90321179 + L1MB3 LINE L1 6062 6175 -8 2145 113 0 0 chrX 86653569 86653884 -90320256 + AluSx SINE Alu 1 315 0 2178 148 37 5 chrX 86654326 86654731 -90319409 + L1MC3 LINE L1 7368 7785 0 1953 136 35 35 chrX 86654830 86655205 -90318935 - THE1C LTR MaLR 0 375 1 22 56 0 0 chrX 86655801 86655837 -90318303 + AT_rich Low_complexity Low_complexity 1 36 0 2758 104 0 5 chrX 86655837 86656241 -90317899 - L1MA3 LINE L1 -1 6304 5903 249 281 34 11 chrX 86656358 86656447 -90317693 + MIR SINE MIR 172 262 0 184 241 37 37 chrX 86656788 86656842 -90317298 - MIR SINE MIR -51 211 158 599 325 68 30 chrX 86657735 86658030 -90316110 + L2 LINE L2 3008 3313 0 23 33 0 0 chrX 86658265 86658295 -90315845 + AT_rich Low_complexity Low_complexity 1 30 0 306 259 70 65 chrX 86658527 86658712 -90315428 + L1M4 LINE L1 4335 4520 -1626 1476 244 67 31 chrX 86658716 86659305 -90314835 - L1MEc LINE L1 -3641 2574 2008 3014 162 24 13 chrX 86659305 86659849 -90314291 - MER44D DNA MER2_type 0 605 1 1476 244 67 31 chrX 86659849 86661235 -90312905 - L1MEc LINE L1 -4207 2008 512 200 33 0 33 chrX 86661839 86661869 -90312271 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 1091 178 42 13 chrX 86662993 86663098 -90311042 - MLT2C1 LTR ERVL 0 464 364 360 0 0 0 chrX 86663098 86663138 -90311002 + (CA)n Simple_repeat Simple_repeat 1 40 0 1091 178 42 13 chrX 86663138 86663316 -90310824 - MLT2C1 LTR ERVL -100 364 161 870 19 0 0 chrX 86664886 86664989 -90309151 + L1PA3 LINE L1 6053 6155 0 1179 111 0 18 chrX 86666157 86666328 -90307812 + AluSg/x SINE Alu 137 304 -8 21 0 0 0 chrX 86667706 86667727 -90306413 + AT_rich Low_complexity Low_complexity 1 21 0 725 153 42 0 chrX 86667798 86667916 -90306224 + FLAM_C SINE Alu 2 124 -9 8565 172 80 89 chrX 86668034 86668373 -90305767 - Tigger1 DNA MER2_type -1 2417 2076 2369 57 0 14 chrX 86668373 86668670 -90305470 - AluY SINE Alu 0 311 19 8565 172 80 89 chrX 86668670 86668794 -90305346 - Tigger1 DNA MER2_type -342 2076 1952 2019 147 0 0 chrX 86668794 86669094 -90305046 + AluSx SINE Alu 1 300 -12 8565 172 80 89 chrX 86669094 86669688 -90304452 - Tigger1 DNA MER2_type -466 1952 1354 7142 49 18 5 chrX 86669688 86671037 -90303103 - L1PA6 LINE L1 -11 6143 4786 8565 172 80 89 chrX 86671037 86671930 -90302210 - Tigger1 DNA MER2_type -1064 1354 490 2349 51 14 0 chrX 86671930 86672225 -90301915 - AluY SINE Alu -12 299 1 8565 172 80 89 chrX 86672225 86672711 -90301429 - Tigger1 DNA MER2_type -1928 490 1 210 37 0 0 chrX 86674563 86674590 -90299550 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chrX 86676790 86676813 -90297327 + AT_rich Low_complexity Low_complexity 1 23 0 1457 172 21 21 chrX 86676930 86677215 -90296925 - L1MC1 LINE L1 0 6333 6049 21 36 0 0 chrX 86677529 86677557 -90296583 + AT_rich Low_complexity Low_complexity 1 28 0 917 154 124 97 chrX 86678227 86678616 -90295524 - MLT1A2 LTR MaLR -1 389 12 6555 143 50 10 chrX 86678794 86679079 -90295061 + Tigger3b DNA MER2_type 1 273 -2755 216 0 0 0 chrX 86679079 86679103 -90295037 + (CTATA)n Simple_repeat Simple_repeat 3 26 0 6555 143 50 10 chrX 86679103 86680001 -90294139 + Tigger3b DNA MER2_type 273 1231 0 24 53 0 0 chrX 86680136 86680174 -90293966 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chrX 86680404 86680428 -90293712 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 86681253 86681276 -90292864 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chrX 86681390 86681412 -90292728 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrX 86681959 86681982 -90292158 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5555 101 12 5 chrX 86681984 86682808 -90291332 - L1PB1 LINE L1 -7 6144 5315 4611 215 12 3 chrX 86682799 86683858 -90290282 + L1PB1 LINE L1 4260 5328 -818 * 887 284 37 21 chrX 86684027 86684458 -90289682 - L1MC4a LINE L1 -104 6017 5583 6198 105 19 4 chrX 86684567 86686065 -90288075 + L1PA10 LINE L1 4626 6144 -24 272 368 0 0 chrX 86686108 86686184 -90287956 - L2 LINE L2 0 3313 3238 8742 157 18 3 chrX 86687120 86689846 -90284294 + L1PA11 LINE L1 3239 6170 -4 2060 179 16 41 chrX 86689850 86690063 -90284077 + L1MA8 LINE L1 5584 5782 -509 321 26 0 0 chrX 86690063 86690101 -90284039 + (CA)n Simple_repeat Simple_repeat 1 38 0 2060 179 16 41 chrX 86690101 86690324 -90283816 + L1MA8 LINE L1 5782 6009 -282 264 98 0 4 chrX 86691378 86691419 -90282721 + MADE1 DNA Mariner 4 37 -43 270 56 0 0 chrX 86691734 86691770 -90282370 + (TG)n Simple_repeat Simple_repeat 1 36 0 1082 111 0 0 chrX 86692392 86692545 -90281595 - AluSg/x SINE Alu -1 309 157 2136 102 27 0 chrX 86692693 86692987 -90281153 + AluSq SINE Alu 1 302 -11 3623 139 98 1 chrX 86693566 86694228 -90279912 - Tigger3b DNA MER2_type -504 727 2 829 192 45 20 chrX 86694285 86694483 -90279657 - MLT1G LTR MaLR 0 590 388 201 121 0 0 chrX 86694497 86694530 -90279610 + (TC)n Simple_repeat Simple_repeat 1 33 0 1559 102 4 4 chrX 86694578 86694813 -90279327 - L1PA11 LINE L1 -2 6172 5938 9965 199 14 7 chrX 86694815 86696953 -90277187 - L1M1 LINE L1 -2139 5426 2865 467 288 83 18 chrX 86697178 86697381 -90276759 - L1MEc LINE L1 -3604 2611 2423 21 82 0 0 chrX 86697381 86697430 -90276710 + AT_rich Low_complexity Low_complexity 1 49 0 467 288 83 18 chrX 86697430 86697661 -90276479 - L1MEc LINE L1 -3792 2423 2134 583 275 57 76 chrX 86697885 86698052 -90276088 - L1MEc LINE L1 -4594 1802 1633 1689 157 17 37 chrX 86698052 86698352 -90275788 - AluJb SINE Alu -18 294 1 583 275 57 76 chrX 86698352 86698885 -90275255 - L1MEc LINE L1 -4763 1633 1115 2391 103 0 0 chrX 86699141 86699443 -90274697 + AluSx SINE Alu 1 302 -10 1499 150 0 105 chrX 86700910 86701224 -90272916 + AluJb SINE Alu 1 281 -31 28 0 0 0 chrX 86701732 86701760 -90272380 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 86701874 86701897 -90272243 + AT_rich Low_complexity Low_complexity 1 23 0 3911 92 47 18 chrX 86701897 86702747 -90271393 - L1MA1 LINE L1 -4 6298 5353 * 12678 155 76 6 chrX 86702746 86705060 -90269080 - L1M1 LINE L1 -3986 3579 1103 475 211 30 38 chrX 86705037 86705170 -90268970 - L1M1 LINE L1 -7417 148 17 * 442 381 46 0 chrX 86705492 86705686 -90268454 + L3 LINE CR1 1373 1575 -2 274 264 44 22 chrX 86706044 86706135 -90268005 - MIR3 SINE MIR 0 208 116 6861 21 1 0 chrX 86706143 86706938 -90267202 - L1PA2 LINE L1 0 6155 5360 202 318 32 48 chrX 86707063 86707189 -90266951 - L2 LINE L2 -497 2817 2694 1088 178 14 46 chrX 86708812 86709031 -90265109 + MER20 DNA MER1_type 8 219 0 535 256 158 23 chrX 86709209 86709424 -90264716 - MIR SINE MIR -11 251 8 2050 132 3 3 chrX 86710397 86710692 -90263448 - AluSq SINE Alu -14 299 5 313 310 11 0 chrX 86714099 86714186 -90259954 - L2 LINE L2 -7 3265 3178 605 315 167 21 chrX 86714911 86715438 -90258702 + L2 LINE L2 2715 3313 0 223 289 113 21 chrX 86715788 86715885 -90258255 - L2 LINE L2 -19 3253 3148 885 262 17 21 chrX 86716026 86716259 -90257881 + MIR SINE MIR 31 262 0 532 249 139 0 chrX 86717459 86717632 -90256508 - MIR SINE MIR -57 205 9 1222 209 93 8 chrX 86717939 86718197 -90255943 + AluJo SINE Alu 2 281 -31 441 173 0 12 chrX 86721364 86721445 -90252695 - LTR52-int LTR ERVL -261 3295 3216 1872 203 58 11 chrX 86721469 86721902 -90252238 - MLT1C LTR MaLR -8 459 7 3838 216 88 6 chrX 86721908 86722726 -90251414 - LTR52-int LTR ERVL -2710 2975 2091 1299 175 88 21 chrX 86722821 86723106 -90251034 - LTR52-int LTR ERVL -3875 1810 1507 1017 168 130 112 chrX 86723106 86723676 -90250464 + MER4C LTR ERV1 1 465 0 1563 239 53 28 chrX 86723677 86724107 -90250033 - LTR52-int LTR ERVL -4176 1509 1069 645 128 0 0 chrX 86724141 86724243 -90249897 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 511 254 8 0 chrX 86724344 86724466 -90249674 - LTR52-int LTR ERVL -2641 915 793 280 284 0 14 chrX 86724545 86724619 -90249521 + tRNA-Met-i tRNA tRNA 1 73 -2 2939 81 15 76 chrX 86725467 86725505 -90248635 - MLT2A1 LTR ERVL -2 442 403 487 40 13 13 chrX 86725505 86725580 -90248560 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 2939 81 15 76 chrX 86725580 86726012 -90248128 - MLT2A1 LTR ERVL -41 403 1 11599 69 12 0 chrX 86726012 86727468 -90246672 - HERVL-A1 LTR ERVL 0 5654 4182 2083 71 7 0 chrX 86727461 86727741 -90246399 - HERVL-A2 LTR ERVL -5372 282 1 * 1055 96 17 6 chrX 86727780 86727957 -90246183 + (TA)n Simple_repeat Simple_repeat 2 180 0 2788 80 32 5 chrX 86727957 86728328 -90245812 - MLT2A2 LTR ERVL -72 381 1 950 239 0 0 chrX 86728614 86728798 -90245342 - LTR53 LTR ERVL 0 519 336 4281 227 29 12 chrX 86728810 86730029 -90244111 + L1MB7 LINE L1 3862 5100 -1046 1575 199 56 35 chrX 86730043 86730471 -90243669 + L1MB7 LINE L1 5584 6020 -164 2516 38 6 16 chrX 86730498 86730812 -90243328 - AluY SINE Alu 0 311 1 852 177 20 64 chrX 86730820 86730861 -90243279 - L1MB3 LINE L1 -9 6174 6133 2461 151 18 22 chrX 86730861 86731311 -90242829 - L1PA16 LINE L1 -2 6164 5717 852 177 20 64 chrX 86731311 86731472 -90242668 - L1MB3 LINE L1 -50 6133 5981 525 276 102 9 chrX 86731473 86731698 -90242442 + L1M4 LINE L1 4741 4986 -1160 1620 216 22 11 chrX 86731729 86732090 -90242050 - MLT1A1 LTR MaLR 0 365 1 319 362 92 13 chrX 86732121 86732350 -90241790 - L2 LINE L2 -1216 2098 1852 1805 291 48 24 chrX 86732357 86732942 -90241198 + MLT2F LTR ERVL 17 620 -43 333 118 0 0 chrX 86732942 86732993 -90241147 + (TG)n Simple_repeat Simple_repeat 2 52 0 1805 291 48 24 chrX 86732993 86733039 -90241101 + MLT2F LTR ERVL 620 663 0 192 361 0 0 chrX 86733332 86733404 -90240736 - L2 LINE L2 -15 3257 3186 205 405 0 0 chrX 86733545 86733629 -90240511 - L2 LINE L2 -184 3088 3005 544 294 125 57 chrX 86733798 86734223 -90239917 + HAL1 LINE L1 5 458 -2049 1382 271 45 32 chrX 86734305 86734990 -90239150 + HAL1 LINE L1 769 1462 -1045 2417 195 15 6 chrX 86734993 86735542 -90238598 - L1 LINE L1 -2946 4619 4066 3943 198 72 50 chrX 86735549 86735704 -90238436 - L1 LINE L1 -6528 1037 887 2451 58 0 0 chrX 86735704 86735997 -90238143 - AluY SINE Alu -18 293 1 3943 198 72 50 chrX 86735997 86736841 -90237299 - L1 LINE L1 -6678 887 16 957 225 130 31 chrX 86737324 86737715 -90236425 - MER57B LTR ERV1 -4 430 1 34 65 0 0 chrX 86737796 86737858 -90236282 + AT_rich Low_complexity Low_complexity 1 62 0 287 317 55 6 chrX 86737868 86738051 -90236089 - L1M4 LINE L1 -1908 4238 4047 7012 197 28 27 chrX 86738081 86739592 -90234548 + L1PB1 LINE L1 3047 4561 -1585 2492 72 3 0 chrX 86739592 86739897 -90234243 + AluSp SINE Alu 1 306 -7 7012 197 28 27 chrX 86739897 86740109 -90234031 + L1PB1 LINE L1 4561 4771 -1375 497 172 11 0 chrX 86740117 86740210 -90233930 - L1 LINE L1 -1279 4867 4774 2457 163 8 3 chrX 86740213 86741511 -90232629 + L1PB1 LINE L1 4802 6151 0 24 0 0 0 chrX 86741612 86741636 -90232504 + AT_rich Low_complexity Low_complexity 1 24 0 1729 163 58 25 chrX 86742763 86743126 -90231014 - THE1C LTR MaLR 0 375 1 7890 130 25 16 chrX 86743126 86744640 -90229500 - THE1C-int LTR MaLR 0 1580 5 1702 134 52 68 chrX 86744645 86745026 -90229114 - THE1C LTR MaLR 0 375 1 930 270 15 8 chrX 86745145 86745404 -90228736 - MIR SINE MIR -1 261 1 342 147 0 0 chrX 86746032 86746100 -90228040 + (TA)n Simple_repeat Simple_repeat 2 69 0 344 281 83 16 chrX 86746102 86746223 -90227917 - MIR SINE MIR -88 174 46 187 361 37 65 chrX 86746545 86746653 -90227487 + L2 LINE L2 3150 3254 -18 470 292 73 15 chrX 86746917 86747054 -90227086 - L2 LINE L2 -7 3265 3121 329 328 139 8 chrX 86749346 86749468 -90224672 + MER5A DNA MER1_type 4 141 -48 235 190 0 35 chrX 86749489 86749547 -90224593 + L2 LINE L2 3258 3313 0 375 331 144 7 chrX 86750857 86750996 -90223144 - MER5A DNA MER1_type 0 189 32 315 0 0 0 chrX 86752188 86752223 -90221917 + (TG)n Simple_repeat Simple_repeat 1 35 0 231 36 0 0 chrX 86752222 86752250 -90221890 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 21 0 0 0 chrX 86752582 86752603 -90221537 + AT_rich Low_complexity Low_complexity 1 21 0 273 341 102 24 chrX 86754162 86754329 -90219811 + MIR3 SINE MIR 16 195 -13 23 33 0 0 chrX 86756397 86756427 -90217713 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chrX 86756561 86756592 -90217548 + AT_rich Low_complexity Low_complexity 1 31 0 1166 174 99 7 chrX 86756677 86756933 -90217207 - MLT1D LTR MaLR -2 503 240 1574 189 9 0 chrX 86756933 86757251 -90216889 - L1P LINE L1 -851 5295 4975 309 180 0 112 chrX 86757253 86757342 -90216798 - MLT1D LTR MaLR -25 480 402 818 218 63 62 chrX 86757347 86757643 -90216497 - MLT1D LTR MaLR -170 297 1 21 36 0 0 chrX 86757791 86757819 -90216321 + AT_rich Low_complexity Low_complexity 1 28 0 1142 6 49 0 chrX 86758061 86758223 -90215917 + (TCTA)n Simple_repeat Simple_repeat 2 171 0 22 0 0 0 chrX 86759156 86759178 -90214962 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 86760189 86760210 -90213930 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 86760244 86760273 -90213867 + AT_rich Low_complexity Low_complexity 1 29 0 1292 222 10 36 chrX 86760331 86760637 -90213503 + AluJo SINE Alu 1 298 -14 225 0 0 0 chrX 86761512 86761537 -90212603 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 86761904 86761925 -90212215 + AT_rich Low_complexity Low_complexity 1 21 0 836 100 0 0 chrX 86762893 86763003 -90211137 - MSTA LTR MaLR 0 428 319 590 117 0 11 chrX 86763086 86763180 -90210960 - MSTA LTR MaLR -335 93 1 396 355 7 67 chrX 86763352 86763651 -90210489 - L2 LINE L2 -243 3070 2791 182 300 0 50 chrX 86764283 86764363 -90209777 + L2 LINE L2 3176 3251 -62 364 329 158 29 chrX 86765168 86765515 -90208625 + MLT1H LTR MaLR 107 498 -51 509 114 0 57 chrX 86765838 86765926 -90208214 + LTR23 LTR ERV1 320 402 -35 23 0 0 0 chrX 86767494 86767517 -90206623 + AT_rich Low_complexity Low_complexity 1 23 0 39 22 0 0 chrX 86767913 86767959 -90206181 + AT_rich Low_complexity Low_complexity 1 46 0 234 305 63 0 chrX 86768062 86768157 -90205983 - L2 LINE L2 -51 3221 3121 6252 127 10 1 chrX 86769542 86770477 -90203663 + Tigger1 DNA MER2_type 1476 2418 0 19024 203 23 26 chrX 86770794 86775423 -90198717 - L1P3 LINE L1 -1444 5017 404 2378 63 7 0 chrX 86775423 86775723 -90198417 - AluY SINE Alu -9 302 1 19024 203 23 26 chrX 86775723 86776117 -90198023 - L1P3 LINE L1 -6057 404 10 4375 160 24 13 chrX 86776140 86776922 -90197218 - Tigger1 DNA MER2_type -1627 791 1 1775 53 0 0 chrX 86777569 86777796 -90196344 - L1PA7 LINE L1 0 6154 5928 225 65 0 0 chrX 86779692 86779723 -90194417 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 300 342 158 0 chrX 86779811 86779963 -90194177 - L2 LINE L2 -218 3054 2879 262 302 156 10 chrX 86780201 86780297 -90193843 - MIR3 SINE MIR -17 191 82 1874 188 103 33 chrX 86780326 86780784 -90193356 - LTR2B LTR ERV1 0 490 1 312 283 42 63 chrX 86781270 86781461 -90192679 - L1M4 LINE L1 -3669 2477 2291 2137 241 23 6 chrX 86781564 86782046 -90192094 - MLT1E2 LTR MaLR 0 626 137 21 0 0 0 chrX 86782277 86782298 -90191842 + AT_rich Low_complexity Low_complexity 1 21 0 2189 110 0 13 chrX 86782784 86783085 -90191055 - AluSc SINE Alu -12 297 1 1836 203 25 3 chrX 86784898 86785253 -90188887 - MLT1A1 LTR MaLR -2 363 1 712 148 52 30 chrX 86785721 86785856 -90188284 + THE1C LTR MaLR 1 138 -237 646 122 73 8 chrX 86785857 86785980 -90188160 + THE1C-int LTR MaLR 1446 1576 -4 1898 157 47 14 chrX 86785984 86786347 -90187793 + THE1C LTR MaLR 1 375 0 407 241 96 24 chrX 86787769 86787935 -90186205 - MER5B DNA MER1_type 0 178 1 469 313 55 16 chrX 86787941 86788123 -90186017 - MER5A DNA MER1_type 0 189 1 1372 254 73 65 chrX 86788407 86788993 -90185147 - MLT1E LTR MaLR -2 591 1 907 113 0 0 chrX 86790084 86790208 -90183932 - FLAM_C SINE Alu -19 124 1 1017 181 30 20 chrX 86790228 86790427 -90183713 + MER1B DNA MER1_type 1 201 -96 54 40 0 0 chrX 86790436 86790511 -90183629 + AT_rich Low_complexity Low_complexity 1 75 0 416 349 42 5 chrX 86790672 86790887 -90183253 - L1M4 LINE L1 -1310 4836 4614 360 0 0 0 chrX 86791143 86791183 -90182957 + (TG)n Simple_repeat Simple_repeat 2 41 0 522 257 99 31 chrX 86791229 86791451 -90182689 - L1MC4 LINE L1 -2 8040 7804 1153 263 75 28 chrX 86791502 86791798 -90182342 - L1MC4 LINE L1 -427 7615 7282 765 257 44 68 chrX 86791798 86792210 -90181930 - MER93a LTR ERV1 0 402 1 1153 263 75 28 chrX 86792210 86792445 -90181695 - L1MC4 LINE L1 -760 7282 7059 201 171 24 0 chrX 86794059 86794100 -90180040 + CT-rich Low_complexity Low_complexity 1 42 0 2198 94 11 0 chrX 86794414 86794700 -90179440 - AluSx SINE Alu -21 291 3 338 336 62 34 chrX 86794931 86795124 -90179016 + MIR SINE MIR 16 210 -52 24 67 0 0 chrX 86795153 86795198 -90178942 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 86796307 86796328 -90177812 + AT_rich Low_complexity Low_complexity 1 21 0 343 264 75 63 chrX 86796937 86797111 -90177029 + MER5B DNA MER1_type 3 178 0 198 103 0 0 chrX 86797671 86797700 -90176440 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 4592 32 0 5 chrX 86797930 86798488 -90175652 - L1P LINE L1 -1366 4780 4226 11260 102 8 1 chrX 86798497 86800051 -90174089 + THE1B-int LTR MaLR 17 1580 0 2185 131 33 19 chrX 86800051 86800410 -90173730 + THE1B LTR MaLR 1 364 0 681 223 31 13 chrX 86800410 86800634 -90173506 + Charlie5 DNA MER1_type 2336 2563 -49 186 43 0 0 chrX 86801209 86801232 -90172908 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 493 111 0 0 chrX 86801544 86801625 -90172515 + AluS SINE Alu 224 304 -8 1907 94 4 22 chrX 86801736 86802011 -90172129 + AluSq SINE Alu 3 272 -41 441 0 0 0 chrX 86802023 86802072 -90172068 + (TAA)n Simple_repeat Simple_repeat 2 50 0 309 298 24 0 chrX 86808266 86808350 -90165790 - L2 LINE L2 -1 3271 3186 3785 228 65 74 chrX 86808799 86810371 -90163769 - LTR8-int LTR ERV1 -2476 5644 4087 276 30 0 0 chrX 86810376 86810409 -90163731 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1415 140 0 14 chrX 86810409 86810617 -90163523 - AluJb SINE Alu -32 280 76 2624 132 50 11 chrX 86810618 86811345 -90162795 - LTR8-int LTR ERV1 -1798 3565 2705 899 181 69 0 chrX 86811355 86811543 -90162597 - LTR8-int LTR ERV1 -569 4311 4111 8584 171 44 79 chrX 86811551 86812859 -90161281 - LTR8-int LTR ERV1 -3813 2450 1240 348 43 0 0 chrX 86812859 86812905 -90161235 + (CA)n Simple_repeat Simple_repeat 1 46 0 8584 171 44 79 chrX 86812905 86813695 -90160445 - LTR8-int LTR ERV1 -5023 1240 424 1257 209 0 5 chrX 86813743 86813963 -90160177 - LTR8-int LTR ERV1 -6044 219 1 3490 146 47 65 chrX 86813963 86814667 -90159473 - LTR8 LTR ERV1 0 691 1 1776 192 86 22 chrX 86814671 86815134 -90159006 - L1MC3 LINE L1 -120 7665 7173 3626 142 53 3 chrX 86815724 86816346 -90157794 - MER39B LTR ERV1 0 653 1 1966 143 3 29 chrX 86818192 86818506 -90155634 - AluJb SINE Alu -4 308 3 2662 114 37 2 chrX 86819418 86819848 -90154292 + LTR56 LTR ERV1 1 445 0 370 238 0 0 chrX 86820688 86820768 -90153372 + MER57A LTR ERV1 284 363 -40 1426 133 22 13 chrX 86820792 86821017 -90153123 + AluJb SINE Alu 3 229 -83 268 253 13 13 chrX 86821233 86821308 -90152832 + LTR49-int LTR ERV1 1116 1190 -5141 353 282 0 0 chrX 86821340 86821411 -90152729 + tRNA-Glu-GAG tRNA tRNA 3 73 -2 791 172 37 12 chrX 86821464 86821627 -90152513 + LTR49-int LTR ERV1 1501 1667 -4664 30768 115 15 58 chrX 86821898 86828330 -90145810 + L1PA7 LINE L1 14 6154 0 485 116 0 0 chrX 86828418 86828487 -90145653 + L1P LINE L1 4948 5016 -1130 * 1153 107 0 0 chrX 86828483 86828660 -90145480 - L1P LINE L1 -805 5341 5165 6659 180 80 68 chrX 86828674 86830335 -90143805 + LTR49-int LTR ERV1 1943 3622 -2709 231 361 28 56 chrX 86832402 86832479 -90141661 - MER91C DNA MER1_type 0 140 65 1511 212 51 29 chrX 86832479 86832565 -90141575 - LTR52 LTR ERVL -2 419 336 243 61 0 0 chrX 86832565 86832598 -90141542 + (CA)n Simple_repeat Simple_repeat 1 33 0 1511 212 51 29 chrX 86832598 86832921 -90141219 - LTR52 LTR ERVL -85 336 1 231 361 28 56 chrX 86832921 86832951 -90141189 - MER91C DNA MER1_type -75 65 36 22 35 0 0 chrX 86832965 86832994 -90141146 + AT_rich Low_complexity Low_complexity 1 29 0 815 144 43 21 chrX 86832998 86833186 -90140954 - L1MA4 LINE L1 -6 6294 6103 214 364 45 9 chrX 86833462 86833572 -90140568 - L2 LINE L2 -5 3267 3154 609 170 126 13 chrX 86834495 86834654 -90139486 - MER104 DNA MER2_type -3 177 1 180 97 0 0 chrX 86836463 86836494 -90137646 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 348 64 0 0 chrX 86836556 86836603 -90137537 + (TG)n Simple_repeat Simple_repeat 2 48 0 7323 156 18 8 chrX 86836745 86839053 -90135087 - L1MA1 LINE L1 -105 7616 5287 207 0 0 0 chrX 86839053 86839076 -90135064 + (T)n Simple_repeat Simple_repeat 1 23 0 32 26 0 0 chrX 86839128 86839167 -90134973 + AT_rich Low_complexity Low_complexity 1 39 0 5901 6 0 0 chrX 86839167 86839823 -90134317 - L1HS LINE L1 0 6155 5500 * 7007 22 0 0 chrX 86839812 86840731 -90133409 + L1P1 LINE L1 4557 5475 -680 * 14046 174 23 12 chrX 86840729 86844886 -90129254 - L1MA1 LINE L1 -2260 5305 1109 436 192 58 19 chrX 86844932 86845036 -90129104 - L1MA1 LINE L1 -7442 123 16 4565 202 10 11 chrX 86845863 86846906 -90127234 - L1MB3 LINE L1 0 6183 5142 1712 174 10 20 chrX 86846906 86847068 -90127072 - AluJb SINE Alu -17 295 136 2414 58 0 32 chrX 86847068 86847376 -90126764 - AluY SINE Alu -13 298 1 1712 174 10 20 chrX 86847376 86847511 -90126629 - AluJb SINE Alu -176 136 1 4565 202 10 11 chrX 86847511 86847683 -90126457 - L1MB3 LINE L1 -1041 5142 4971 512 335 39 26 chrX 86847740 86847970 -90126170 - MIR SINE MIR -28 234 2 2035 221 92 13 chrX 86848353 86848950 -90125190 + LTR48B LTR ERV1 1 644 0 315 281 111 30 chrX 86849184 86849319 -90124821 + MIR SINE MIR 102 247 -15 638 147 39 23 chrX 86849562 86849691 -90124449 + MER46C DNA MER2_type 207 337 -1 21 0 0 0 chrX 86850156 86850177 -90123963 + AT_rich Low_complexity Low_complexity 1 21 0 331 328 26 9 chrX 86850455 86850571 -90123569 - MIR3 SINE MIR -43 165 48 601 321 170 0 chrX 86850986 86851210 -90122930 - MIR SINE MIR 0 262 1 788 336 38 50 chrX 86851465 86851941 -90122199 - LTR33 LTR ERVL -8 513 44 1336 97 5 48 chrX 86853199 86853406 -90120734 + Tigger2a DNA MER2_type 11 208 -226 349 141 0 47 chrX 86853594 86853658 -90120482 - MLT1J LTR MaLR -52 459 399 308 226 12 24 chrX 86854257 86854341 -90119799 - L1MB1 LINE L1 -55 6134 6052 * 820 122 26 131 chrX 86854336 86854565 -90119575 + L1MA10 LINE L1 6111 6315 -19 699 269 185 23 chrX 86854585 86854931 -90119209 - MLT1J LTR MaLR -108 403 2 277 247 82 0 chrX 86855187 86855260 -90118880 - MER116 DNA Mariner -1 79 1 1858 215 85 58 chrX 86855475 86856084 -90118056 + MLT1E2 LTR MaLR 1 626 0 1137 148 25 5 chrX 86857065 86857261 -90116879 + Tigger2a DNA MER2_type 205 404 -40 25 51 0 0 chrX 86857749 86857788 -90116352 + AT_rich Low_complexity Low_complexity 1 39 0 1106 243 37 52 chrX 86858084 86858566 -90115574 + L1M4 LINE L1 4074 4548 -1598 319 329 68 84 chrX 86858577 86859003 -90115137 - L2 LINE L2 -42 3230 2812 5464 42 7 3 chrX 86859195 86859883 -90114257 - L1P LINE L1 -2184 3962 3272 7880 16 0 0 chrX 86859884 86860931 -90113209 + L1HS LINE L1 5107 6153 -2 1290 206 127 16 chrX 86860947 86861389 -90112751 - L1MEc LINE L1 -5222 1174 684 844 208 63 10 chrX 86861430 86861637 -90112503 + MLT1C LTR MaLR 54 271 -196 1568 154 53 113 chrX 86911638 86912053 -90062087 + L1MC1 LINE L1 339 728 -5698 2119 200 65 0 chrX 86912053 86912453 -90061687 - MSTB LTR MaLR 0 426 1 8202 191 7 16 chrX 86912458 86913191 -90060949 - MSTB-int LTR MaLR -5 1646 908 2707 27 0 0 chrX 86913191 86913490 -90060650 - AluYa5 SINE Alu -12 299 1 8202 191 7 16 chrX 86913490 86914417 -90059723 - MSTB-int LTR MaLR -743 908 1 2150 196 44 2 chrX 86914417 86914826 -90059314 - MSTB LTR MaLR 0 426 1 524 200 8 8 chrX 86914833 86914953 -90059187 + L1MC1 LINE L1 732 851 -5575 562 194 83 0 chrX 86914956 86915136 -90059004 + L1MC1 LINE L1 1988 2182 -4244 817 154 8 0 chrX 86915136 86915259 -90058881 + FLAM_C SINE Alu 1 124 -19 348 24 0 0 chrX 86915260 86915301 -90058839 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 4797 252 46 13 chrX 86915301 86917441 -90056699 + L1MC1 LINE L1 2175 4385 -2041 319 154 0 0 chrX 86917451 86917516 -90056624 - L1MA3 LINE L1 0 6305 6241 282 193 0 0 chrX 86917521 86917578 -90056562 - L1 LINE L1 -988 5158 5102 11818 176 25 33 chrX 86917581 86917644 -90056496 - L1MA2 LINE L1 -48 6256 6194 1215 147 89 0 chrX 86917644 86917869 -90056271 + L1PA11 LINE L1 5930 6174 0 11818 176 25 33 chrX 86917869 86919889 -90054251 - L1MA2 LINE L1 -110 6194 4160 2011 114 13 57 chrX 86919889 86920205 -90053935 - AluSx SINE Alu -10 302 1 11818 176 25 33 chrX 86920205 86920423 -90053717 - L1MA2 LINE L1 -2144 4160 3942 2145 114 10 3 chrX 86920423 86920729 -90053411 - AluSc SINE Alu -1 308 1 11818 176 25 33 chrX 86920729 86922238 -90051902 - L1MA2 LINE L1 -2362 3942 2423 324 0 0 0 chrX 86922238 86922274 -90051866 + (TG)n Simple_repeat Simple_repeat 2 37 0 11818 176 25 33 chrX 86922274 86922332 -90051808 - L1MA2 LINE L1 -3881 2423 2414 2100 113 0 3 chrX 86922332 86922651 -90051489 - AluY SINE Alu 0 318 1 11818 176 25 33 chrX 86922651 86922702 -90051438 - L1MA2 LINE L1 -3890 2414 2364 3522 229 32 9 chrX 86922708 86924415 -90049725 + L1MC1 LINE L1 4391 6141 -472 3001 171 19 19 chrX 86924425 86924475 -90049665 - MER1A DNA MER1_type -2173 527 478 2198 139 0 0 chrX 86924475 86924778 -90049362 - AluSx SINE Alu -9 303 1 3001 171 19 19 chrX 86924778 86925254 -90048886 - MER1A DNA MER1_type -2221 479 1 2772 174 10 4 chrX 86925467 86925950 -90048190 + MER66B LTR ERV1 1 486 0 10484 221 75 88 chrX 86925950 86928568 -90045572 + MER66B-int LTR ERV1 1 2536 -4140 6266 58 5 0 chrX 86928568 86929359 -90044781 + L1PA7 LINE L1 5360 6154 0 10484 221 75 88 chrX 86929359 86931201 -90042939 + MER66B-int LTR ERV1 2536 4401 -2275 229 147 0 73 chrX 86931201 86931269 -90042871 - MER4D LTR ERV1 -805 67 5 353 327 7 7 chrX 86931372 86931522 -90042618 - LOR1-int LTR ERV1 -1142 6978 6829 6800 134 11 34 chrX 86931602 86932760 -90041380 + MER66B-int LTR ERV1 4539 5670 -1006 1129 82 48 0 chrX 86932761 86932932 -90041208 + AluSq SINE Alu 131 308 0 5746 143 31 7 chrX 86932932 86933895 -90040245 + MER66B-int LTR ERV1 5684 6669 -7 2686 161 38 19 chrX 86933902 86934379 -90039761 + MER66B LTR ERV1 1 486 0 948 278 94 0 chrX 86934379 86934667 -90039473 + MER45B DNA AcHobo 9 323 -717 1517 148 74 89 chrX 86934682 86934993 -90039147 + MLT2C1 LTR ERVL 12 317 -80 213 65 0 0 chrX 86934993 86935024 -90039116 + (TG)n Simple_repeat Simple_repeat 2 32 0 1517 148 74 89 chrX 86935024 86935104 -90039036 + MLT2C1 LTR ERVL 317 397 0 3102 302 61 41 chrX 86935105 86935869 -90038271 + ERVL-C1 LTR ERVL 2 749 -5015 2504 84 0 0 chrX 86935869 86936178 -90037962 - AluSc SINE Alu 0 309 1 3102 302 61 41 chrX 86936178 86937213 -90036927 + ERVL-C1 LTR ERVL 749 1837 -3927 974 214 0 12 chrX 86937228 86937471 -90036669 + ERVL-C1 LTR ERVL 5518 5757 -7 1310 171 0 0 chrX 86937471 86937705 -90036435 + MLT2C1 LTR ERVL 3 236 -161 40534 34 25 2 chrX 86937705 86943718 -90030422 + L1PA3 LINE L1 5 6155 0 26 30 0 0 chrX 86943720 86943753 -90030387 + AT_rich Low_complexity Low_complexity 1 33 0 252 141 0 10 chrX 86943753 86943846 -90030294 + MLT2C1 LTR ERVL 216 393 -4 238 296 0 14 chrX 86943853 86943924 -90030216 + MER45B DNA AcHobo 313 382 -658 681 217 0 0 chrX 86943955 86944075 -90030065 - FLAM_C SINE Alu -23 120 1 1917 209 18 5 chrX 86944075 86944520 -90029620 + MER45B DNA AcHobo 390 840 -200 3535 200 35 23 chrX 86944527 86945261 -90028879 - L1MB7 LINE L1 -129 6055 5298 1852 128 54 8 chrX 86945261 86945613 -90028527 - L1MA1 LINE L1 0 6302 5935 3535 200 35 23 chrX 86945613 86946207 -90027933 - L1MB7 LINE L1 -886 5298 4712 1576 235 50 31 chrX 86946208 86946791 -90027349 - L1MB7 LINE L1 -2347 3799 3206 1359 208 80 10 chrX 86946780 86947093 -90027047 - L1MB5 LINE L1 0 6174 5840 * 2962 221 114 21 chrX 86947090 86948067 -90026073 - L1MB7 LINE L1 -2906 3240 2174 1797 194 24 64 chrX 86948076 86948529 -90025611 + LTR55 LTR ERV 1 435 -113 343 235 97 51 chrX 86948627 86948844 -90025296 - L1MDa LINE L1 -4295 2426 2200 24 32 0 0 chrX 86948895 86948926 -90025214 + AT_rich Low_complexity Low_complexity 1 31 0 582 265 71 27 chrX 86949087 86949423 -90024717 - L1MDa LINE L1 -4459 2132 1792 2297 169 5 5 chrX 86949443 86949846 -90024294 + MER57A LTR ERV1 1 403 0 4068 206 11 30 chrX 86949846 86950704 -90023436 + MER57A-int LTR ERV1 1 841 -6696 291 233 0 41 chrX 86950811 86950884 -90023256 + MER57-int LTR ERV1 2836 2905 -3358 375 127 0 0 chrX 86950947 86951002 -90023138 + MER34C LTR ERV1 156 210 -375 245 88 0 0 chrX 86951005 86951039 -90023101 - MER34C LTR ERV1 -383 202 169 290 302 6 63 chrX 86951114 86951273 -90022867 + MER34C LTR ERV1 278 427 -158 404 212 9 0 chrX 86951274 86951384 -90022756 + MER57-int LTR ERV1 1096 1172 -3699 425 230 60 0 chrX 86951565 86951665 -90022475 + MER57-int LTR ERV1 3236 3341 -2990 375 261 0 0 chrX 86951721 86951813 -90022327 + MER57-int LTR ERV1 3354 3445 -2886 3781 157 108 126 chrX 86951940 86953045 -90021095 + MER57-int LTR ERV1 1721 2844 -4205 230 203 130 0 chrX 86953045 86953114 -90021026 - MER109 Unknown Unknown -1845 587 510 3781 157 108 126 chrX 86953114 86953657 -90020483 + MER57-int LTR ERV1 2844 5437 -1612 306 114 0 0 chrX 86953650 86953694 -90020446 - MER57-int LTR ERV1 -222 7315 7272 * 719 136 24 8 chrX 86953694 86953819 -90020321 - LTR54B LTR ERV1 -371 127 1 2512 148 36 7 chrX 86953819 86954257 -90019883 - MER57-int LTR ERV1 -393 7144 6694 2221 182 10 0 chrX 86954265 86954661 -90019479 - MER57A LTR ERV1 0 403 4 1196 174 40 43 chrX 86954669 86954922 -90019218 - MER57A-int LTR ERV1 -5 7532 7281 724 135 23 30 chrX 86954923 86955056 -90019084 - LTR54B LTR ERV1 -366 132 1 1171 156 13 22 chrX 86955162 86955386 -90018754 - AluJb SINE Alu -5 307 86 1340 215 98 29 chrX 86955414 86955902 -90018238 - L1M4 LINE L1 -5131 1724 1203 2431 294 63 23 chrX 86956433 86957306 -90016834 - L1M4 LINE L1 -5923 936 29 1569 230 36 48 chrX 86957348 86957869 -90016271 - L1M4 LINE L1 -1850 4296 3782 490 206 7 14 chrX 86957922 86958068 -90016072 - L1M4 LINE L1 -2974 3172 3028 13484 185 17 9 chrX 86958089 86962066 -90012074 - L1MA1 LINE L1 0 7721 3712 19597 175 30 7 chrX 86962173 86963399 -90010741 - L1MA1 LINE L1 -3853 3712 2516 1993 112 0 7 chrX 86963399 86963715 -90010425 - AluSg SINE Alu 0 322 9 19597 175 30 7 chrX 86963715 86966099 -90008041 - L1MA1 LINE L1 -5049 2516 18 23 33 0 0 chrX 86966358 86966388 -90007752 + AT_rich Low_complexity Low_complexity 1 30 0 1790 159 55 25 chrX 86966524 86966888 -90007252 + THE1C LTR MaLR 1 375 0 1865 98 0 0 chrX 86967061 86967306 -90006834 + AluSg SINE Alu 40 284 -26 189 0 0 0 chrX 86967309 86967330 -90006810 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 219 303 152 38 chrX 86967583 86967715 -90006425 - MIR SINE MIR -6 256 110 235 95 119 0 chrX 86967781 86967823 -90006317 - L1PA15 LINE L1 -7 6158 6112 * 655 47 0 12 chrX 86967819 86967904 -90006236 - L1PA3 LINE L1 -205 5949 5866 1847 40 0 0 chrX 86967904 86968125 -90006015 + L1PA3 LINE L1 5933 6155 0 4212 105 16 0 chrX 86968132 86968750 -90005390 - L1PA13 LINE L1 -43 6120 5493 24 0 0 0 chrX 86968888 86968912 -90005228 + AT_rich Low_complexity Low_complexity 1 24 0 327 293 101 30 chrX 86969071 86969269 -90004871 - MIR SINE MIR -49 213 2 25 0 0 0 chrX 86971382 86971407 -90002733 + AT_rich Low_complexity Low_complexity 1 25 0 1276 237 25 0 chrX 86971407 86971686 -90002454 - AluJo SINE Alu -22 290 5 24 53 0 0 chrX 86972666 86972704 -90001436 + AT_rich Low_complexity Low_complexity 1 38 0 654 279 5 11 chrX 86972820 86973010 -90001130 - MER5A DNA MER1_type 0 189 1 186 374 55 0 chrX 86973014 86973105 -90001035 + MIR SINE MIR 16 111 -97 523 284 84 38 chrX 86973176 86973415 -90000725 - L2 LINE L2 0 3313 3064 539 321 32 21 chrX 86973416 86973603 -90000537 - MIR SINE MIR -69 193 5 249 325 35 11 chrX 86973704 86973838 -90000302 - MIR SINE MIR -67 141 3 263 296 0 28 chrX 86976833 86976904 -89997236 + L2 LINE L2 3244 3312 -1 2350 74 3 3 chrX 86978356 86978654 -89995486 - AluY SINE Alu -10 301 4 496 329 154 37 chrX 86978667 86979027 -89995113 - L1MC/D LINE L1 -2011 5797 5364 240 35 0 0 chrX 86979027 86979056 -89995084 + (CA)n Simple_repeat Simple_repeat 1 29 0 496 329 154 37 chrX 86979056 86979181 -89994959 - L1MC/D LINE L1 -2444 5364 5255 22 0 0 0 chrX 86979357 86979379 -89994761 + AT_rich Low_complexity Low_complexity 1 22 0 1189 121 16 0 chrX 86979427 86979617 -89994523 + L1MA4 LINE L1 5736 5928 -372 346 240 16 23 chrX 86979650 86979779 -89994361 + (TA)n Simple_repeat Simple_repeat 1 128 0 272 180 108 58 chrX 86979863 86980002 -89994138 - L1MC/D LINE L1 -1526 4620 4475 365 98 0 0 chrX 86980296 86980347 -89993793 - MADE1 DNA Mariner 0 80 30 245 290 0 0 chrX 86980422 86980491 -89993649 - L1MC/D LINE L1 -2061 4085 4017 381 258 23 15 chrX 86980555 86980687 -89993453 - L1MEc LINE L1 -1446 4769 4637 1070 172 84 5 chrX 86980713 86980928 -89993212 + MER46A DNA MER2_type 5 236 0 608 281 0 0 chrX 86980950 86981096 -89993044 - L1MEc LINE L1 -2006 4209 4064 1790 254 38 38 chrX 86981214 86982296 -89991844 + L1MA6 LINE L1 11 2458 -5107 301 200 0 0 chrX 86982296 86982351 -89991789 + AluJ/FLAM SINE Alu 25 79 -223 3559 212 20 16 chrX 86982365 86984236 -89989904 + L1MA6 LINE L1 3140 5502 -2063 1808 227 58 58 chrX 86984248 86985001 -89989139 + L1MA6 LINE L1 6967 7719 0 1349 247 56 49 chrX 86985015 86985700 -89988440 - L1MEc LINE L1 -2317 3898 3205 2693 83 88 5 chrX 86985700 86986068 -89988072 + MLT2A1 LTR ERVL 2 409 -35 195 42 0 0 chrX 86986068 86986092 -89988048 + (TA)n Simple_repeat Simple_repeat 2 25 0 2693 83 88 5 chrX 86986092 86986132 -89988008 + MLT2A1 LTR ERVL 409 444 0 1349 247 56 49 chrX 86986132 86986248 -89987892 - L1MEc LINE L1 -3010 3205 3091 826 217 49 12 chrX 86986228 86986447 -89987693 - L1PA16 LINE L1 -10 6156 5936 * 320 290 62 13 chrX 86986467 86986691 -89987449 - L1MEc LINE L1 -3149 3066 2832 215 31 31 0 chrX 86988187 86988219 -89985921 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 1254 51 0 0 chrX 86988219 86988377 -89985763 - L1PA5 LINE L1 -16 6138 5981 6005 28 12 0 chrX 86988377 86989158 -89984982 + L1PA5 LINE L1 5184 5972 -182 772 278 39 39 chrX 86989156 86989616 -89984524 - L1MEc LINE L1 -3372 2843 2384 * 642 277 24 10 chrX 86989725 86989931 -89984209 - L1ME3A LINE L1 -1 6169 5961 1181 278 38 5 chrX 86989965 86990336 -89983804 + L1ME3A LINE L1 5514 5896 -274 237 244 104 7 chrX 86990378 86990513 -89983627 - L1MEc LINE L1 -4110 2286 2139 249 242 61 45 chrX 86990931 86991063 -89983077 - L1M4 LINE L1 -3789 2357 2224 209 56 0 28 chrX 86991324 86991360 -89982780 + (CA)n Simple_repeat Simple_repeat 2 36 0 589 339 46 56 chrX 86991682 86992112 -89982028 - HAL1b LINE L1 -674 1655 1222 2443 113 3 3 chrX 86992112 86992465 -89981675 - THE1A LTR MaLR 0 355 3 11287 99 6 2 chrX 86992467 86994040 -89980100 - THE1A-int LTR MaLR 0 1580 1 2656 70 6 6 chrX 86994040 86994395 -89979745 - THE1A LTR MaLR 0 355 1 589 339 46 56 chrX 86994395 86994550 -89979590 - HAL1b LINE L1 -1106 1223 278 266 306 148 0 chrX 86996380 86996488 -89977652 - L2 LINE L2 -7 3306 3183 283 335 55 88 chrX 86996566 86996873 -89977267 - L2 LINE L2 -10 3262 2966 204 176 0 39 chrX 86997090 86997141 -89976999 + (TAAG)n Simple_repeat Simple_repeat 3 51 0 518 328 10 10 chrX 86997148 86997340 -89976800 + MIR SINE MIR 71 262 0 399 348 23 7 chrX 86997400 86997549 -89976591 + MIR3 SINE MIR 4 154 -68 312 310 55 50 chrX 86998426 86998626 -89975514 + L2 LINE L2 3113 3313 0 24 0 0 0 chrX 86998713 86998737 -89975403 + AT_rich Low_complexity Low_complexity 1 24 0 675 262 0 7 chrX 86998935 86999080 -89975060 - LTR16A LTR ERVL -148 302 159 697 361 25 28 chrX 86999464 86999896 -89974244 - ERVL LTR ERVL -507 5257 4827 431 70 35 12 chrX 86999920 87000006 -89974134 + (TCTA)n Simple_repeat Simple_repeat 2 89 0 3934 303 58 61 chrX 87000572 87002330 -89971810 - ERVL LTR ERVL -1212 3784 2022 2742 142 7 2 chrX 87002330 87002754 -89971386 + MSTA LTR MaLR 2 427 -1 3934 303 58 61 chrX 87002754 87002902 -89971238 - ERVL LTR ERVL -2974 2022 1875 2574 123 12 7 chrX 87002902 87003316 -89970824 - L1MA3 LINE L1 0 6305 5890 3934 303 58 61 chrX 87003316 87003699 -89970441 - ERVL LTR ERVL -3121 1875 1433 414 129 0 29 chrX 87003877 87003947 -89970193 + (TG)n Simple_repeat Simple_repeat 1 68 0 634 163 0 43 chrX 87003947 87004131 -89970009 + (TA)n Simple_repeat Simple_repeat 1 176 0 314 268 10 21 chrX 87004162 87004259 -89969881 + L1MC4 LINE L1 6614 6709 -1333 253 239 56 14 chrX 87004421 87004492 -89969648 - MER58 DNA MER1_type 0 2420 2347 664 325 116 51 chrX 87005293 87006006 -89968134 - L2 LINE L2 0 3313 2544 447 307 15 15 chrX 87006979 87007116 -89967024 + MIR SINE MIR 11 147 -115 280 314 59 10 chrX 87007134 87007236 -89966904 - L2 LINE L2 -4 3268 3162 298 274 19 57 chrX 87007244 87007350 -89966790 + MIR SINE MIR 150 251 -11 22 0 0 0 chrX 87007469 87007491 -89966649 + AT_rich Low_complexity Low_complexity 1 22 0 617 204 9 0 chrX 87007786 87007899 -89966241 + Tigger3(Golem) DNA MER2_type 4 117 -2912 * 3616 139 61 33 chrX 87007881 87008176 -89965964 + Tigger3(Golem) DNA MER2_type 2277 2562 -466 2212 93 0 13 chrX 87008176 87008488 -89965652 + AluSx SINE Alu 3 310 -2 3616 139 61 33 chrX 87008488 87008911 -89965229 + Tigger3(Golem) DNA MER2_type 2562 3015 -13 4700 180 45 7 chrX 87008922 87010199 -89963941 - L1M2 LINE L1 -664 5648 4329 3282 185 88 9 chrX 87010220 87010901 -89963239 - L1PA8 LINE L1 -20 6152 5418 460 157 0 0 chrX 87010900 87010983 -89963157 - L1M2 LINE L1 -1811 4335 4253 * 450 330 145 15 chrX 87011107 87011485 -89962655 + L2 LINE L2 2721 3150 -163 1052 57 17 16 chrX 87011506 87011751 -89962389 + (TCTA)n Simple_repeat Simple_repeat 1 245 0 241 372 45 26 chrX 87012807 87012963 -89961177 + MIR SINE MIR 48 206 -56 408 40 0 0 chrX 87013256 87013306 -89960834 + (TA)n Simple_repeat Simple_repeat 2 51 0 312 357 53 58 chrX 87013313 87013725 -89960415 - L2 LINE L2 -1192 2122 1713 620 241 138 6 chrX 87014102 87014276 -89959864 + MIR SINE MIR 54 250 -12 184 360 84 36 chrX 87014358 87014633 -89959507 - L2 LINE L2 -2422 892 605 24 0 0 0 chrX 87014784 87014808 -89959332 + AT_rich Low_complexity Low_complexity 1 24 0 1794 164 24 46 chrX 87014815 87015186 -89958954 + MLT1A1 LTR MaLR 1 363 -2 25 0 0 0 chrX 87016549 87016574 -89957566 + AT_rich Low_complexity Low_complexity 1 25 0 2513 226 9 51 chrX 87016899 87017164 -89956976 + MER90 LTR ERV1 7 281 -333 1425 192 86 150 chrX 87017164 87017830 -89956310 - MLT1E2 LTR MaLR -2 624 2 2513 226 9 51 chrX 87017830 87017864 -89956276 + MER90 LTR ERV1 281 315 -299 3070 63 78 0 chrX 87017864 87018239 -89955901 + MLT2A1 LTR ERVL 1 412 -32 294 29 0 0 chrX 87018239 87018274 -89955866 + (TA)n Simple_repeat Simple_repeat 2 36 0 3070 63 78 0 chrX 87018274 87018310 -89955830 + MLT2A1 LTR ERVL 412 444 0 2513 226 9 51 chrX 87018310 87018524 -89955616 + MER90 LTR ERV1 315 493 -121 540 203 55 16 chrX 87018524 87018706 -89955434 - MER53 DNA DNA 0 189 1 2513 226 9 51 chrX 87018706 87018822 -89955318 + MER90 LTR ERV1 493 612 -2 1828 164 24 32 chrX 87018828 87019205 -89954935 - THE1C LTR MaLR -1 374 1 189 147 0 0 chrX 87019380 87019414 -89954726 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 200 0 0 chrX 87019460 87019520 -89954620 + (TATG)n Simple_repeat Simple_repeat 4 63 0 3130 283 60 14 chrX 87019521 87020764 -89953376 + L1ME LINE L1 123 1423 -4973 1435 261 109 14 chrX 87020890 87021729 -89952411 + L1ME LINE L1 4697 5603 -632 2124 255 31 26 chrX 87021731 87022467 -89951673 - L1M4c LINE L1 -2295 4087 3348 22 80 0 0 chrX 87022994 87023044 -89951096 + AT_rich Low_complexity Low_complexity 1 50 0 832 195 35 6 chrX 87023172 87023341 -89950799 - MER45A DNA AcHobo -4 174 1 2772 211 46 21 chrX 87023558 87024357 -89949783 - L1M4c LINE L1 -3038 3344 2526 505 228 94 6 chrX 87024329 87024509 -89949631 - L1M4c LINE L1 -4183 2201 2006 * 760 256 223 9 chrX 87024516 87024725 -89949415 - L1M4c LINE L1 -4606 1778 1615 1066 39 0 0 chrX 87024725 87024855 -89949285 - L1PA5 LINE L1 -2 6152 6023 760 256 223 9 chrX 87024855 87024981 -89949159 - L1M4c LINE L1 -4769 1615 1371 1207 276 29 9 chrX 87025025 87025366 -89948774 - MER41E LTR ERV1 -152 360 13 27 29 0 0 chrX 87025615 87025649 -89948491 + AT_rich Low_complexity Low_complexity 1 34 0 413 209 0 0 chrX 87025771 87025857 -89948283 - L1M4c LINE L1 -5031 1353 1268 261 174 0 0 chrX 87025964 87026010 -89948130 - L1MC4 LINE L1 -1340 6702 6657 180 0 0 0 chrX 87027092 87027112 -89947028 + (A)n Simple_repeat Simple_repeat 1 20 0 292 152 62 27 chrX 87027792 87027904 -89946236 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 21 0 0 0 chrX 87027992 87028013 -89946127 + AT_rich Low_complexity Low_complexity 1 21 0 384 316 5 77 chrX 87030310 87030506 -89943634 + MIR3 SINE MIR 17 198 -10 307 317 40 0 chrX 87030881 87030982 -89943158 - L1ME3A LINE L1 -24 6146 6042 279 0 0 0 chrX 87031019 87031050 -89943090 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1461 183 45 11 chrX 87031055 87031323 -89942817 - AluJo SINE Alu -35 277 1 198 0 0 0 chrX 87031532 87031554 -89942586 + (T)n Simple_repeat Simple_repeat 1 22 0 351 0 0 0 chrX 87032156 87032195 -89941945 + (TTG)n Simple_repeat Simple_repeat 1 39 0 771 187 0 60 chrX 87032195 87032361 -89941779 - FAM SINE Alu -19 156 1 3799 114 2 5 chrX 87033129 87033699 -89940441 + L1PA13 LINE L1 5593 6160 -3 222 267 27 0 chrX 87034993 87035068 -89939072 + (TA)n Simple_repeat Simple_repeat 2 78 0 6015 162 10 17 chrX 87035646 87037169 -89936971 + L1MA2 LINE L1 4127 5639 -665 5620 92 8 39 chrX 87037169 87038733 -89935407 - L1PA8 LINE L1 -13 6159 4702 6015 162 10 17 chrX 87038733 87039121 -89935019 + L1MA2 LINE L1 5639 6028 -276 1251 179 89 53 chrX 87039122 87039480 -89934660 + THE1C LTR MaLR 5 375 0 8048 162 89 13 chrX 87039482 87040948 -89933192 + THE1C-int LTR MaLR 3 1580 0 1628 171 52 30 chrX 87040948 87041310 -89932830 + THE1C LTR MaLR 1 370 -5 4167 139 26 16 chrX 87041314 87041551 -89932589 + L1MA2 LINE L1 5541 5774 -530 1862 164 0 20 chrX 87041551 87041855 -89932285 + AluSx SINE Alu 1 298 -14 4167 139 26 16 chrX 87041855 87042373 -89931767 + L1MA2 LINE L1 5774 6304 0 1706 224 46 50 chrX 87042396 87043306 -89930834 + L1M3 LINE L1 1415 2419 -3965 729 218 5 48 chrX 87043310 87043516 -89930624 + L1M3 LINE L1 4718 4914 -1468 628 234 21 0 chrX 87043514 87043655 -89930485 + L1MB3 LINE L1 5963 6106 -77 * 1601 231 30 14 chrX 87043653 87044231 -89929909 + L1M3 LINE L1 5281 5869 -547 254 325 12 0 chrX 87044239 87044319 -89929821 - L2 LINE L2 -8 3305 3225 21 0 0 0 chrX 87045891 87045912 -89928228 + AT_rich Low_complexity Low_complexity 1 21 0 7639 26 3 0 chrX 87047578 87048664 -89925476 - L1PA3 LINE L1 -3 6152 5066 1624 245 27 19 chrX 87048998 87049410 -89924730 - MLT1C LTR MaLR 0 467 53 1527 226 48 64 chrX 87049436 87049857 -89924283 + MLT2D LTR ERVL 1 414 0 2033 201 84 9 chrX 87049860 87050426 -89923714 + MLT1-int LTR MaLR 4 732 -639 248 314 35 0 chrX 87050546 87050632 -89923508 + MLT1-int LTR MaLR 676 764 -971 523 323 43 47 chrX 87102083 87102383 -89871757 - LTR16A LTR ERVL -8 442 144 550 287 38 0 chrX 87102816 87102973 -89871167 + MIR SINE MIR 80 242 -20 451 305 35 5 chrX 87103431 87103631 -89870509 + L1ME LINE L1 5534 5739 -382 1058 40 0 0 chrX 87103728 87103852 -89870288 + L1P2 LINE L1 5522 5645 -509 1905 139 0 30 chrX 87105024 87105325 -89868815 + AluSx SINE Alu 3 294 -18 24 0 0 0 chrX 87105838 87105862 -89868278 + AT_rich Low_complexity Low_complexity 1 24 0 295 297 158 0 chrX 87107303 87107404 -89866736 + L2 LINE L2 3155 3271 -1 1923 127 0 7 chrX 87107573 87107856 -89866284 + AluSx SINE Alu 1 281 -31 10986 92 15 1 chrX 87108328 87110667 -89863473 - L1PA7 LINE L1 -2 6152 3786 293 164 75 25 chrX 87111367 87111526 -89862614 + (TA)n Simple_repeat Simple_repeat 2 168 0 203 132 77 0 chrX 87111583 87111674 -89862466 + (TA)n Simple_repeat Simple_repeat 2 99 0 1513 163 163 29 chrX 87111680 87112055 -89862085 + MSTB1 LTR MaLR 4 428 -4 216 184 0 0 chrX 87112065 87112103 -89862037 + GA-rich Low_complexity Low_complexity 2 39 0 290 65 0 22 chrX 87112114 87112160 -89861980 + (TG)n Simple_repeat Simple_repeat 2 46 0 301 242 72 65 chrX 87112406 87112559 -89861581 - L1MEd LINE L1 -5017 1102 949 2858 151 71 20 chrX 87112639 87113176 -89860964 + L1PB3 LINE L1 5584 6147 -7 927 245 121 57 chrX 87113624 87113996 -89860144 + MSTD LTR MaLR 1 396 0 4462 181 26 8 chrX 87114067 87115091 -89859049 + L1PBa LINE L1 972 2198 -4665 6137 222 19 13 chrX 87115091 87116822 -89857318 + L1PBa LINE L1 2563 4297 -2565 351 0 0 0 chrX 87117214 87117253 -89856887 + (TG)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chrX 87118401 87118429 -89855711 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 87118546 87118572 -89855568 + (TG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 87119479 87119502 -89854638 + AT_rich Low_complexity Low_complexity 1 23 0 4882 204 22 15 chrX 87120211 87121315 -89852825 - L1MC2 LINE L1 -9 6335 5225 13492 226 26 71 chrX 87121367 87122936 -89851204 - L1PA13 LINE L1 -1 7600 5962 1909 120 33 0 chrX 87122936 87123210 -89850930 + AluSx SINE Alu 22 304 -8 13492 226 26 71 chrX 87123210 87125116 -89849024 - L1PA13 LINE L1 -1639 5962 3972 1942 133 23 72 chrX 87125116 87125507 -89848633 - THE1C LTR MaLR 0 375 4 13492 226 26 71 chrX 87125507 87129599 -89844541 - L1PA13 LINE L1 -3629 3972 7 2253 276 16 3 chrX 87129597 87130303 -89843837 - L1MC2 LINE L1 -926 5220 4506 * 736 199 20 152 chrX 87130469 87130771 -89843369 + MLT1A1 LTR MaLR 104 365 0 5927 227 67 43 chrX 87130772 87132466 -89841674 + MLT1A1-int LTR MaLR 2 1735 0 1093 206 27 124 chrX 87132468 87132870 -89841270 + MLT1A1 LTR MaLR 3 365 0 2130 269 64 33 chrX 87132878 87133552 -89840588 - L1MC4a LINE L1 -329 7666 6963 252 0 0 0 chrX 87133552 87133580 -89840560 + (TG)n Simple_repeat Simple_repeat 2 29 0 2130 269 64 33 chrX 87133580 87133932 -89840208 - L1MC4a LINE L1 -1032 6963 6623 369 0 0 0 chrX 87133978 87134019 -89840121 + (TA)n Simple_repeat Simple_repeat 2 42 0 1846 273 81 19 chrX 87134136 87134802 -89839338 + L1ME4a LINE L1 962 1585 -4799 183 42 0 0 chrX 87134802 87134826 -89839314 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1846 273 81 19 chrX 87134826 87134982 -89839158 + L1ME4a LINE L1 1585 1730 -4654 2394 65 3 3 chrX 87134982 87135291 -89838849 + AluY SINE Alu 1 309 -2 1846 273 81 19 chrX 87135291 87135355 -89838785 + L1ME4a LINE L1 1730 1904 -4480 2897 258 39 65 chrX 87135384 87136486 -89837654 + L1ME4a LINE L1 3034 4094 -2288 2214 116 0 0 chrX 87136486 87136797 -89837343 + AluSx SINE Alu 1 311 -1 2897 258 39 65 chrX 87136797 87137089 -89837051 + L1ME4a LINE L1 4094 4392 -1990 2265 209 27 1 chrX 87137082 87137819 -89836321 + L1ME4a LINE L1 5141 5902 -576 * 1059 196 24 125 chrX 87137825 87138113 -89836027 + MLT1B LTR MaLR 87 338 -52 1943 129 0 45 chrX 87138113 87138424 -89835716 + AluSx SINE Alu 1 297 -15 1059 196 24 125 chrX 87138424 87138472 -89835668 + MLT1B LTR MaLR 338 389 -1 530 199 168 3 chrX 87138477 87138609 -89835531 + MLT2D LTR ERVL 1 138 -276 2336 288 37 18 chrX 87138887 87139674 -89834466 + L1M3b LINE L1 859 1660 -4621 2779 78 0 0 chrX 87139774 87140144 -89833996 + L1PA6 LINE L1 5785 6154 0 1259 227 92 6 chrX 87140163 87140480 -89833660 + MER2 DNA MER2_type 1 344 0 307 227 86 74 chrX 87140571 87140707 -89833433 + L1ME4a LINE L1 6189 6329 -28 2085 126 26 9 chrX 87140707 87141056 -89833084 + THE1A LTR MaLR 1 355 0 307 227 86 74 chrX 87141056 87141082 -89833058 + L1ME4a LINE L1 6329 6353 -4 22 0 0 0 chrX 87141516 87141538 -89832602 + AT_rich Low_complexity Low_complexity 1 22 0 234 136 0 0 chrX 87142693 87142737 -89831403 + (GA)n Simple_repeat Simple_repeat 1 44 0 220 276 60 75 chrX 87143152 87143286 -89830854 - MIR SINE MIR -50 212 81 249 337 111 23 chrX 87143481 87143653 -89830487 + MIR SINE MIR 70 256 -6 22 35 0 0 chrX 87144525 87144554 -89829586 + AT_rich Low_complexity Low_complexity 1 29 0 17572 215 36 8 chrX 87145262 87151761 -89822379 - L1PA13 LINE L1 -3 6811 2 1507 180 56 51 chrX 87151815 87152188 -89821952 + THE1C LTR MaLR 1 375 0 8965 146 52 10 chrX 87152190 87153697 -89820443 + THE1C-int LTR MaLR 3 1572 -8 1660 146 54 43 chrX 87153704 87154073 -89820067 + THE1C LTR MaLR 3 375 0 257 140 40 0 chrX 87154543 87154593 -89819547 + L1MC4 LINE L1 6652 6703 -1339 246 229 0 62 chrX 87154619 87154715 -89819425 + L1MC4 LINE L1 6614 6703 -1339 203 133 0 0 chrX 87154802 87154832 -89819308 + (GAA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chrX 87155284 87155306 -89818834 + AT_rich Low_complexity Low_complexity 1 22 0 2642 96 3 6 chrX 87155355 87155720 -89818420 + THE1B LTR MaLR 1 364 0 1481 107 21 160 chrX 87155720 87156057 -89818083 + THE1B-int LTR MaLR 1 290 -1290 315 116 0 0 chrX 87156063 87156106 -89818034 - THE1-int LTR MaLR -1235 345 303 * 5328 118 32 4 chrX 87156100 87156880 -89817260 + THE1B-int LTR MaLR 779 1580 0 2413 130 6 6 chrX 87156882 87157244 -89816896 + THE1B LTR MaLR 3 364 0 184 289 0 0 chrX 87157877 87157922 -89816218 + MIR SINE MIR 216 260 -2 267 103 0 0 chrX 87158100 87158139 -89816001 + (CA)n Simple_repeat Simple_repeat 2 40 0 6511 170 28 16 chrX 87158146 87159431 -89814709 - HSMAR2 DNA Mariner -1 1301 1 1603 201 46 0 chrX 87159463 87159812 -89814328 + MER47A DNA MER2_type 2 366 0 746 219 0 66 chrX 87160058 87160241 -89813899 - MER5B DNA MER1_type -7 171 1 767 344 188 16 chrX 87160241 87160979 -89813161 + L3 LINE CR1 551 1415 -162 565 217 127 53 chrX 87161359 87161548 -89812592 - MSTD LTR MaLR 0 396 194 2303 87 0 3 chrX 87161583 87161932 -89812208 + AluSg SINE Alu 1 348 0 329 243 0 0 chrX 87161942 87162012 -89812128 - MSTD LTR MaLR -219 177 108 7301 171 31 39 chrX 87162118 87164629 -89809511 + L1PB2 LINE L1 3663 6150 -1 507 73 0 0 chrX 87164632 87164917 -89809223 + (CA)n Simple_repeat Simple_repeat 1 285 0 3600 104 39 0 chrX 87164669 87164849 -89809291 + L1PB1 LINE L1 5593 5765 -386 507 73 0 0 chrX 87164849 87164917 -89809223 + (CA)n Simple_repeat Simple_repeat 2 69 0 3600 104 39 0 chrX 87164917 87165274 -89808866 + L1PB1 LINE L1 5765 6151 0 258 257 71 107 chrX 87165774 87165914 -89808226 - MIR SINE MIR -47 215 81 279 0 0 0 chrX 87166723 87166754 -89807386 + (TG)n Simple_repeat Simple_repeat 2 32 0 27 29 0 0 chrX 87166837 87166871 -89807269 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chrX 87167049 87167080 -89807060 + AT_rich Low_complexity Low_complexity 1 31 0 1638 285 63 61 chrX 87167779 87168832 -89805308 + L1MDa LINE L1 19 1216 -5324 2793 189 42 71 chrX 87168841 87169668 -89804472 + L1MDa LINE L1 1516 2318 -4222 461 186 124 0 chrX 87169672 87169785 -89804355 - L1M1 LINE L1 -3988 3577 3451 * 478 208 30 18 chrX 87169784 87169952 -89804188 + L1MDa LINE L1 2326 2495 -4045 801 188 0 7 chrX 87170006 87170150 -89803990 - Tigger4(Zombi) DNA MER2_type -1 2730 2588 18796 193 24 8 chrX 87170166 87177744 -89796396 - L1MA1 LINE L1 -4 7717 16 12955 161 26 41 chrX 87177744 87179824 -89794316 - Tigger4(Zombi) DNA MER2_type -130 2601 484 2125 133 0 0 chrX 87179824 87180126 -89794014 - AluSx SINE Alu -10 302 1 12955 161 26 41 chrX 87180126 87180603 -89793537 - Tigger4(Zombi) DNA MER2_type -2247 484 1 1961 262 59 29 chrX 87180603 87181314 -89792826 + L1MDa LINE L1 2524 3212 -3328 2227 114 0 7 chrX 87181314 87181621 -89792519 + AluSq SINE Alu 1 305 -8 180 0 0 0 chrX 87181621 87181641 -89792499 + (TA)n Simple_repeat Simple_repeat 2 21 0 1961 262 59 29 chrX 87181641 87181927 -89792213 + L1MDa LINE L1 3211 3552 -2988 407 345 90 43 chrX 87182014 87182590 -89791550 + L2 LINE L2 2214 2816 -498 234 337 111 6 chrX 87182922 87183094 -89791046 + MIR SINE MIR 73 262 0 4273 109 2 5 chrX 87183261 87183884 -89790256 - L1PA14 LINE L1 -3 6158 5538 378 304 107 0 chrX 87183976 87184088 -89790052 - L2 LINE L2 -8 3305 3182 862 198 0 0 chrX 87185050 87185217 -89788923 - L1MB1 LINE L1 -1 6167 6001 1594 170 50 29 chrX 87185218 87185638 -89788502 + MLT2B1 LTR ERVL 2 480 -40 189 0 0 0 chrX 87185743 87185764 -89788376 + (TG)n Simple_repeat Simple_repeat 2 22 0 24552 128 51 33 chrX 87185764 87191608 -89782532 - L1PA8 LINE L1 -11 6161 12 204 40 0 0 chrX 87192364 87192389 -89781751 + (TG)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chrX 87193736 87193764 -89780376 + AT_rich Low_complexity Low_complexity 1 28 0 876 165 6 12 chrX 87194150 87194314 -89779826 - L1MA4A LINE L1 -33 6270 6108 3435 129 52 16 chrX 87194838 87195417 -89778723 + MER4A LTR ERV1 1 600 0 5452 127 14 9 chrX 87196549 87197682 -89776458 + L1PA13 LINE L1 5021 6155 -8 1430 279 68 59 chrX 87197723 87198711 -89775429 - HAL1 LINE L1 -111 2396 1400 1839 142 156 13 chrX 87198727 87199100 -89775040 + MSTA LTR MaLR 1 426 -2 8045 188 19 31 chrX 87199102 87200773 -89773367 + MSTA-int LTR MaLR 1 1651 0 1730 174 148 11 chrX 87200776 87201149 -89772991 + MSTA LTR MaLR 5 428 0 552 247 0 70 chrX 87201172 87201358 -89772782 + MIR SINE MIR 81 253 -9 1770 280 147 46 chrX 87201368 87201732 -89772408 - HAL1 LINE L1 -1120 1387 1061 231 36 0 0 chrX 87201732 87201760 -89772380 + (TA)n Simple_repeat Simple_repeat 2 29 0 1770 280 147 46 chrX 87201760 87202014 -89772126 - HAL1 LINE L1 -1446 1061 834 490 180 10 0 chrX 87202014 87202114 -89772026 - L1MA6 LINE L1 -5 6295 6195 1770 280 147 46 chrX 87202114 87202426 -89771714 - HAL1 LINE L1 -1673 834 555 218 31 0 31 chrX 87202426 87202458 -89771682 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1770 280 147 46 chrX 87202458 87202785 -89771355 - HAL1 LINE L1 -1952 555 1 22 70 0 0 chrX 87203386 87203429 -89770711 + AT_rich Low_complexity Low_complexity 1 43 0 2156 96 6 6 chrX 87204828 87205141 -89768999 - AluSq SINE Alu 0 313 1 445 331 107 29 chrX 87205530 87205772 -89768368 - MIR SINE MIR -1 261 1 5392 171 20 19 chrX 87206405 87207846 -89766294 - L1MA8 LINE L1 -3 6288 4844 1144 128 25 10 chrX 87207843 87208039 -89766101 - L1MC2 LINE L1 -140 6204 6006 * 7565 206 8 8 chrX 87208036 87209690 -89764450 - L1 LINE L1 -776 5370 3716 2379 250 44 12 chrX 87209710 87211041 -89763099 - L1MC2 LINE L1 -525 5819 4442 2834 137 23 2 chrX 87211180 87211653 -89762487 - L1PA13 LINE L1 -15 6799 6317 1430 137 7 3 chrX 87211653 87211938 -89762202 - THE1B LTR MaLR 0 364 1 9967 123 40 3 chrX 87211938 87213461 -89760679 - THE1B-int LTR MaLR 0 1580 1 2201 157 6 3 chrX 87213461 87213824 -89760316 - THE1B LTR MaLR 0 364 1 17279 222 20 12 chrX 87213824 87219015 -89755125 - L1PA13 LINE L1 -491 6321 1080 2721 278 30 6 chrX 87219045 87220032 -89754108 - L1MC2 LINE L1 -1696 4450 3440 * 13863 199 50 9 chrX 87220026 87225884 -89748256 - L1PB1 LINE L1 -1 6866 775 1742 292 43 17 chrX 87225890 87226763 -89747377 - L1MC2 LINE L1 -2994 3152 2257 3346 119 10 6 chrX 87226763 87227267 -89746873 + MER9 LTR ERVK 1 506 -5 8634 214 16 100 chrX 87227290 87229690 -89744450 + L1M2 LINE L1 2 2199 -4650 723 245 7 7 chrX 87229691 87229846 -89744294 - L1PB1 LINE L1 -6632 220 66 2461 161 19 23 chrX 87229968 87230398 -89743742 - MSTA LTR MaLR 0 428 1 260 222 16 32 chrX 87230544 87230607 -89743533 + L1M4c LINE L1 2 63 -7105 271 295 29 36 chrX 87231066 87231205 -89742935 + L1M4c LINE L1 1323 1460 -5709 2179 215 54 14 chrX 87231342 87232090 -89742050 + L1MB3 LINE L1 5064 5848 -335 1054 167 14 5 chrX 87232099 87232314 -89741826 + L1MB3 LINE L1 5952 6168 -15 1197 102 0 0 chrX 87232410 87232567 -89741573 + AluSg/x SINE Alu 145 301 -9 473 261 73 14 chrX 87232710 87232928 -89741212 + L1MD3 LINE L1 7765 7995 0 27 0 0 0 chrX 87233105 87233132 -89741008 + AT_rich Low_complexity Low_complexity 1 27 0 617 206 27 73 chrX 87233260 87233479 -89740661 - L1MC5 LINE L1 -52 7909 7701 1150 246 65 43 chrX 87233484 87234037 -89740103 - L1MC5 LINE L1 -123 7838 7274 954 216 0 0 chrX 87234264 87234454 -89739686 - AluSx SINE Alu -2 308 119 225 213 0 0 chrX 87234470 87234517 -89739623 - AluSq/x SINE Alu -135 165 119 802 149 0 0 chrX 87234549 87234670 -89739470 - AluSq/x SINE Alu -190 123 3 1710 63 5 0 chrX 87234741 87234963 -89739177 + AluY SINE Alu 87 309 -2 378 218 142 76 chrX 87234975 87235172 -89738968 - L1MC5 LINE L1 -843 7118 6909 1848 220 23 10 chrX 87235291 87235682 -89738458 + MSTD LTR MaLR 1 396 0 21 82 0 0 chrX 87235959 87236008 -89738132 + AT_rich Low_complexity Low_complexity 1 49 0 4002 60 4 0 chrX 87236030 87236551 -89737589 - L1PA5 LINE L1 -930 5216 4694 7024 57 5 1 chrX 87236551 87237472 -89736668 + L1PA5 LINE L1 5228 6151 -3 538 226 28 40 chrX 87237611 87237788 -89736352 - L1MC5 LINE L1 -1872 5936 5762 432 200 18 10 chrX 87237983 87238102 -89736038 - L1MA4A LINE L1 0 6269 6044 294 143 0 0 chrX 87238084 87238133 -89736007 - L1MA4A LINE L1 -180 6123 6075 * 3626 208 22 41 chrX 87238300 87239246 -89734894 - L1MB3 LINE L1 -2 6181 5254 1380 115 0 0 chrX 87239268 87239459 -89734681 + AluSg/x SINE Alu 122 312 0 5918 107 55 23 chrX 87239466 87240434 -89733706 + L1MA2 LINE L1 5297 6295 -9 566 313 64 12 chrX 87240445 87240790 -89733350 - L1MB3 LINE L1 -1240 4906 4544 391 279 153 11 chrX 87240790 87240973 -89733167 + MIR SINE MIR 42 250 -12 2426 271 204 3 chrX 87241047 87241800 -89732340 + L1M2 LINE L1 2 906 -5943 4195 237 75 9 chrX 87241800 87242955 -89731185 - L1MB3 LINE L1 -2214 3932 2703 * 6101 120 14 6 chrX 87242954 87243011 -89731129 + L1PB1 LINE L1 5109 5164 -987 192 97 0 0 chrX 87243011 87243042 -89731098 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 6101 120 14 6 chrX 87243042 87244018 -89730122 + L1PB1 LINE L1 5164 6151 0 2000 190 20 0 chrX 87244028 87244210 -89729930 + L1MA4A LINE L1 5593 5770 -533 207 0 0 0 chrX 87244210 87244233 -89729907 + (TA)n Simple_repeat Simple_repeat 2 24 0 2000 190 20 0 chrX 87244233 87244445 -89729695 + L1MA4A LINE L1 5770 5995 -308 1445 36 27 22 chrX 87444452 87444677 -89529463 + HERVH LTR ERV1 7488 7713 0 1326 154 85 111 chrX 87444677 87445137 -89529003 + LTR7 LTR ERV1 1 448 -2 1217 69 0 38 chrX 87445139 87445298 -89528842 - AluY SINE Alu -158 153 1 3012 133 6 8 chrX 87445478 87445965 -89528175 - LTR29 LTR ERV1 0 622 137 1357 229 89 38 chrX 87446550 87447021 -89527119 - MER50 LTR ERV1 0 734 240 214 174 0 0 chrX 87447314 87447360 -89526780 + (TA)n Simple_repeat Simple_repeat 2 47 0 1734 194 145 37 chrX 87447426 87448135 -89526005 - LTR1B LTR ERV1 -13 772 2 455 391 13 13 chrX 87449050 87449275 -89524865 - MIR SINE MIR -35 227 3 3177 128 61 50 chrX 87449372 87449975 -89524165 - MER4B LTR ERV1 0 610 1 2796 152 48 29 chrX 87449991 87450571 -89523569 - LTR49 LTR ERV1 -4 591 1 251 241 0 0 chrX 87451026 87451080 -89523060 + (TAA)n Simple_repeat Simple_repeat 3 56 0 682 277 98 18 chrX 87451088 87451217 -89522923 - MIR SINE MIR -6 256 139 4008 139 10 2 chrX 87451217 87451844 -89522296 + MER41B LTR ERV1 4 635 0 682 277 98 18 chrX 87451844 87451938 -89522202 - MIR SINE MIR -123 139 15 222 118 0 0 chrX 87452571 87452605 -89521535 + (CA)n Simple_repeat Simple_repeat 1 34 0 520 223 185 32 chrX 87453043 87453200 -89520940 - MER5A DNA MER1_type 0 189 9 283 238 107 12 chrX 87453303 87453387 -89520753 + MER5A DNA MER1_type 98 189 0 815 223 18 6 chrX 87453469 87453635 -89520505 + MER5B DNA MER1_type 11 178 0 33 0 0 0 chrX 87453896 87453929 -89520211 + AT_rich Low_complexity Low_complexity 1 33 0 205 271 0 0 chrX 87454474 87454522 -89519618 - L2 LINE L2 -10 3303 3256 256 333 0 0 chrX 87456109 87456211 -89517929 + LTR40a LTR ERVL 6 107 -412 30234 43 35 2 chrX 87456212 87460210 -89513930 + L1P LINE L1 4 4130 -2016 604 123 66 0 chrX 87460368 87460474 -89513666 - L1PA14 LINE L1 -280 5881 5769 8398 137 2 2 chrX 87460535 87462626 -89511514 - L1PA10 LINE L1 -16 6152 4038 1213 83 52 0 chrX 87462626 87462818 -89511322 + L1MA1 LINE L1 6100 6302 0 8014 199 16 4 chrX 87462818 87465674 -89508466 + L1PA16 LINE L1 3279 6165 -1 234 0 0 0 chrX 87466049 87466075 -89508065 + (CA)n Simple_repeat Simple_repeat 1 26 0 468 312 29 0 chrX 87466585 87466723 -89507417 - L2 LINE L2 0 3313 3172 3580 114 66 4 chrX 87466911 87467508 -89506632 - MER39B LTR ERV1 0 625 8 219 88 0 0 chrX 87467739 87467773 -89506367 + (CA)n Simple_repeat Simple_repeat 2 35 0 218 302 19 0 chrX 87468116 87468169 -89505971 + L2 LINE L2 3154 3207 -65 * 418 235 59 10 chrX 87468165 87468267 -89505873 - L2 LINE L2 0 3313 3207 208 304 25 13 chrX 87468586 87468665 -89505475 - MIR SINE MIR -4 258 179 3532 101 15 5 chrX 87469446 87470062 -89504078 + L1PB1 LINE L1 5163 5782 -369 2598 99 0 3 chrX 87470173 87470185 -89503955 + L1PB1 LINE L1 5781 5792 -359 285 29 0 0 chrX 87470185 87470219 -89503921 + (CA)n Simple_repeat Simple_repeat 2 35 0 2598 99 0 3 chrX 87470219 87470578 -89503562 + L1PB1 LINE L1 5792 6151 0 406 243 29 0 chrX 87470612 87470715 -89503425 - Charlie8 DNA MER1_type -2231 186 81 569 257 74 11 chrX 87471293 87471468 -89502672 - MLT1B LTR MaLR 0 390 205 225 263 18 0 chrX 87471521 87471578 -89502562 + (TG)n Simple_repeat Simple_repeat 2 59 0 243 133 0 0 chrX 87471578 87471623 -89502517 + (GA)n Simple_repeat Simple_repeat 1 45 0 546 188 8 8 chrX 87471650 87471767 -89502373 - MLT1B LTR MaLR -218 156 40 738 177 14 7 chrX 87472545 87472692 -89501448 + L1ME LINE L1 5459 5606 -558 1772 134 27 30 chrX 87472693 87473022 -89501118 + L1MB4 LINE L1 5846 6173 -7 284 186 34 0 chrX 87473114 87473173 -89500967 + L1ME LINE L1 5615 5675 -489 257 0 30 0 chrX 87473980 87474013 -89500127 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 87475119 87475148 -89498992 + AT_rich Low_complexity Low_complexity 1 29 0 510 206 79 32 chrX 87477172 87477298 -89496842 + MIR SINE MIR 28 159 -103 1777 197 105 13 chrX 87477526 87477982 -89496158 - MLT1D LTR MaLR 0 505 8 384 225 79 0 chrX 87477989 87478078 -89496062 - MIR SINE MIR -71 137 42 880 103 75 0 chrX 87478085 87478259 -89495881 - L1MA4A LINE L1 -4 6299 6113 2147 100 4 0 chrX 87478412 87478737 -89495403 - AluSg SINE Alu 0 326 1 404 306 67 40 chrX 87478869 87479274 -89494866 - MLT1J2 LTR MaLR 0 450 56 2320 173 56 42 chrX 87479290 87479788 -89494352 - MLT1D LTR MaLR 0 505 1 210 356 122 9 chrX 87480029 87480144 -89493996 + L2 LINE L2 2383 2510 -804 245 300 36 36 chrX 87480800 87480910 -89493230 + L2 LINE L2 3198 3307 -6 1197 87 12 0 chrX 87481488 87481660 -89492480 + L1PA14 LINE L1 5985 6158 -3 682 287 34 34 chrX 87481660 87481928 -89492212 + MLT1A1 LTR MaLR 43 310 -55 2466 74 0 7 chrX 87482047 87482357 -89491783 - AluY SINE Alu -3 308 1 1622 162 61 4 chrX 87482358 87482517 -89491623 - AluJb SINE Alu -18 294 111 281 47 23 0 chrX 87482517 87482560 -89491580 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1622 162 61 4 chrX 87482560 87482678 -89491462 - AluJb SINE Alu -201 111 1 21 36 0 0 chrX 87483114 87483142 -89490998 + AT_rich Low_complexity Low_complexity 1 28 0 2188 108 7 0 chrX 87483792 87484099 -89490041 - AluSx SINE Alu -3 309 1 1607 184 24 40 chrX 87484689 87485059 -89489081 - MLT1A1 LTR MaLR 0 365 2 2432 54 0 17 chrX 87485481 87485777 -89488363 - AluY SINE Alu -19 292 2 619 312 139 72 chrX 87486690 87487743 -89486397 - L2 LINE L2 -14 3299 2170 258 185 111 62 chrX 87487875 87487956 -89486184 + MIR SINE MIR 86 170 -92 237 323 10 0 chrX 87488048 87488144 -89485996 + MER103 DNA DNA 3 99 -67 236 156 22 0 chrX 87488144 87488189 -89485951 + MIR3 SINE MIR 150 195 -13 961 247 90 17 chrX 87488195 87488544 -89485596 - LTR40b LTR ERVL -2 460 124 40748 35 21 1 chrX 87488580 87494612 -89479528 - L1PA3 LINE L1 0 6155 1 22 0 0 0 chrX 87494750 87494772 -89479368 + AT_rich Low_complexity Low_complexity 1 22 0 669 266 143 52 chrX 87494881 87495363 -89478777 + MLT1K LTR MaLR 45 570 -18 * 1501 195 7 24 chrX 87495359 87495657 -89478483 + MER58B DNA MER1_type 11 303 -38 2601 51 0 19 chrX 87495683 87495999 -89478141 - AluY SINE Alu -1 310 1 443 289 151 6 chrX 87496365 87496524 -89477616 - MIR SINE MIR -61 201 20 438 273 0 0 chrX 87496685 87496784 -89477356 + MER94 DNA DNA 36 134 0 188 271 42 0 chrX 87500077 87500125 -89474015 - MIR3 SINE MIR -51 157 108 2081 92 0 4 chrX 87500493 87500791 -89473349 - AluSg SINE Alu 0 320 24 4344 91 17 11 chrX 87501181 87501821 -89472319 - L1MA1 LINE L1 -2 6300 5657 1451 129 7 0 chrX 87501841 87502176 -89471964 - L1MA1 LINE L1 -743 5403 5103 327 256 0 0 chrX 87502231 87502309 -89471831 + L1MC4 LINE L1 6615 6692 -1350 310 227 0 52 chrX 87502310 87502366 -89471774 - L1MA1 LINE L1 -1047 5099 5049 183 42 0 0 chrX 87502366 87502390 -89471750 + (TTG)n Simple_repeat Simple_repeat 1 24 0 310 227 0 52 chrX 87502390 87502430 -89471710 - L1MA1 LINE L1 -1097 5049 5008 * 1055 92 0 11 chrX 87502427 87502601 -89471539 - L1M1 LINE L1 -4287 3278 3107 * 1297 226 24 66 chrX 87502598 87502975 -89471165 - L1M1 LINE L1 -7124 441 81 823 332 16 8 chrX 87503403 87503659 -89470481 + MLT1I LTR MaLR 152 409 0 14633 174 25 5 chrX 87504007 87510022 -89464118 + L1PB1 LINE L1 726 6861 -6 625 320 22 9 chrX 87510103 87510325 -89463815 - MIR SINE MIR -35 227 3 2370 93 0 6 chrX 87511303 87511615 -89462525 - AluSx SINE Alu 0 312 3 203 139 83 0 chrX 87511769 87511805 -89462335 + L2 LINE L2 3272 3310 -3 1528 144 32 129 chrX 87511832 87512234 -89461906 - MLT1A1 LTR MaLR 0 365 3 1261 148 0 0 chrX 87513446 87513635 -89460505 - MER5A DNA MER1_type 0 189 1 2292 180 50 5 chrX 87514941 87515385 -89458755 + MLT1C LTR MaLR 1 464 -3 1291 230 18 43 chrX 87515598 87515989 -89458151 - Charlie7 DNA MER1_type -144 2468 2088 705 286 72 102 chrX 87515997 87516852 -89457288 - L1MC4 LINE L1 -133 7909 7080 458 223 50 50 chrX 87516847 87516986 -89457154 + L1MC4 LINE L1 6841 6979 -1063 * 258 202 160 43 chrX 87517010 87517104 -89457036 - L1MC4a LINE L1 -1133 6675 6571 3217 139 57 5 chrX 87517117 87517694 -89456446 - L1MB2 LINE L1 -2 6169 5563 2969 129 0 10 chrX 87518102 87518582 -89455558 - L1MA5 LINE L1 -2 6298 5824 319 289 78 49 chrX 87518630 87518834 -89455306 - L1MC4a LINE L1 -1322 6486 6277 2225 83 7 0 chrX 87518922 87519211 -89454929 - AluSx SINE Alu -21 291 1 259 389 135 11 chrX 87519853 87520378 -89453762 - L2 LINE L2 -568 2746 2157 327 313 75 66 chrX 87520384 87520822 -89453318 - L2 LINE L2 -1 3312 2871 388 252 17 0 chrX 87520842 87520957 -89453183 + L1MEd LINE L1 11 127 -5992 437 267 20 0 chrX 87520969 87521119 -89453021 - LTR37B LTR ERV1 0 468 316 479 257 53 0 chrX 87521203 87521316 -89452824 + L2 LINE L2 3195 3313 0 1212 328 69 23 chrX 87521338 87521857 -89452283 + L1MEd LINE L1 216 758 -5361 464 240 13 39 chrX 87521932 87522086 -89452054 + L1MEd LINE L1 1094 1243 -4876 924 358 68 29 chrX 87522185 87522668 -89451472 - L2 LINE L2 -497 2817 2316 1638 147 71 108 chrX 87524279 87524728 -89449412 + L1MA9 LINE L1 5840 6276 -36 1156 177 123 58 chrX 87524742 87525019 -89449121 + AluJo SINE Alu 3 297 -5 220 299 79 95 chrX 87525103 87525344 -89448796 + L2 LINE L2 2942 3178 -94 899 159 87 31 chrX 87525430 87525625 -89448515 + MER3 DNA MER1_type 2 207 -2 415 306 74 0 chrX 87526940 87527048 -89447092 + L2 LINE L2 3138 3253 -19 208 306 185 23 chrX 87528178 87528351 -89445789 + L2 LINE L2 2190 2390 -924 204 293 211 16 chrX 87528418 87528541 -89445599 + L2 LINE L2 2692 2838 -476 937 210 40 33 chrX 87528543 87528819 -89445321 - MER92B LTR ERV1 0 636 359 2057 166 15 49 chrX 87528839 87529249 -89444891 - MER61B LTR ERV1 -29 396 1 26918 104 29 39 chrX 87529253 87529281 -89444859 - MER61B-int LTR ERV1 -4 5213 5186 2357 103 3 0 chrX 87529281 87529593 -89444547 + AluSp SINE Alu 1 313 0 26918 104 29 39 chrX 87529593 87534352 -89439788 - MER61B-int LTR ERV1 -31 5186 181 2343 135 12 39 chrX 87534514 87534921 -89439219 - MER61B LTR ERV1 -29 396 1 1491 185 86 10 chrX 87534927 87535241 -89438899 - MER92B LTR ERV1 -298 338 1 1498 227 12 9 chrX 87535460 87535641 -89438499 + MER92B LTR ERV1 1 185 -451 2589 161 28 85 chrX 87535641 87535676 -89438464 - MLT2B2 LTR ERVL -4 511 476 300 91 0 0 chrX 87535676 87535720 -89438420 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 2589 161 28 85 chrX 87535720 87536226 -89437914 - MLT2B2 LTR ERVL -39 476 1 1498 227 12 9 chrX 87536226 87536365 -89437775 + MER92B LTR ERV1 185 322 -314 3422 140 114 19 chrX 87536392 87537040 -89437100 + MER50 LTR ERV1 2 711 -23 429 141 30 50 chrX 87537106 87537205 -89436935 - MER92B LTR ERV1 -229 407 311 2196 215 36 36 chrX 87537238 87537792 -89436348 - MER67B LTR ERV1 -107 554 1 366 181 42 0 chrX 87537797 87537869 -89436271 - MER31B LTR ERV1 -391 75 1 759 157 44 105 chrX 87537895 87538124 -89436016 + MER92B LTR ERV1 422 636 0 399 348 188 0 chrX 87538141 87538279 -89435861 + L2 LINE L2 3104 3267 -5 278 248 30 40 chrX 87538530 87538631 -89435509 - MER34 LTR ERV1 0 542 443 1898 130 167 23 chrX 87538633 87538986 -89435154 - MER4A LTR ERV1 0 664 261 663 80 10 30 chrX 87538986 87539086 -89435054 - MER4A LTR ERV1 -566 98 1 1035 250 45 88 chrX 87539106 87539550 -89434590 - MER34 LTR ERV1 -117 425 1 1764 209 34 82 chrX 87541039 87541622 -89432518 - MER34B LTR ERV1 0 565 11 1326 296 114 11 chrX 87541993 87542553 -89431587 + L2 LINE L2 1537 2154 -1160 1141 305 36 25 chrX 87542561 87542918 -89431222 + LTR16C LTR ERVL 74 434 -57 972 305 58 17 chrX 87542940 87543301 -89430839 - LTR16A LTR ERVL -23 427 52 180 0 0 0 chrX 87545094 87545114 -89429026 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 6751 163 31 14 chrX 87545163 87547431 -89426709 - L1PA15 LINE L1 0 6165 3863 323 178 41 0 chrX 87547516 87547685 -89426455 + (TA)n Simple_repeat Simple_repeat 2 177 0 296 183 24 32 chrX 87547704 87547830 -89426310 + (TA)n Simple_repeat Simple_repeat 2 126 0 28 79 0 0 chrX 87547836 87547899 -89426241 + AT_rich Low_complexity Low_complexity 1 63 0 14991 92 5 0 chrX 87547902 87550826 -89423314 + L1PA7 LINE L1 3213 6135 -19 297 68 0 0 chrX 87550826 87550870 -89423270 + (TA)n Simple_repeat Simple_repeat 1 44 0 212 192 51 64 chrX 87550893 87550971 -89423169 + L3 LINE CR1 1187 1263 -314 197 189 27 9 chrX 87551303 87551414 -89422726 + (TA)n Simple_repeat Simple_repeat 2 114 0 2123 245 117 68 chrX 87551435 87552185 -89421955 + MER21B LTR ERV1 17 803 -60 1447 200 38 61 chrX 87552401 87552528 -89421612 + MLT1B LTR MaLR 5 133 -257 1692 164 161 11 chrX 87552528 87552900 -89421240 + MSTA LTR MaLR 1 428 0 1447 200 38 61 chrX 87552900 87553167 -89420973 + MLT1B LTR MaLR 133 390 0 1174 214 55 58 chrX 87553201 87553598 -89420542 - MSTD LTR MaLR 0 396 1 854 185 11 49 chrX 87553914 87554098 -89420042 + MLT1E2 LTR MaLR 15 191 -435 1128 58 0 0 chrX 87554098 87554237 -89419903 + AluYa5/8 SINE Alu 171 309 -1 1849 233 35 0 chrX 87554247 87554642 -89419498 + MLT1E2 LTR MaLR 218 626 0 1245 371 36 16 chrX 87554646 87555374 -89418766 - ERVL LTR ERVL -880 4884 4143 1224 371 9 5 chrX 87555440 87556078 -89418062 - ERVL LTR ERVL -1719 4045 3405 1494 275 18 57 chrX 87556155 87556195 -89417945 + L2 LINE L2 2665 2705 -608 1508 180 79 53 chrX 87556195 87556253 -89417887 + MLT1A1 LTR MaLR 1 56 -309 1980 43 0 9 chrX 87556253 87556486 -89417654 + AluY SINE Alu 74 304 -7 1508 180 79 53 chrX 87556486 87556783 -89417357 + MLT1A1 LTR MaLR 56 365 0 1494 275 18 57 chrX 87556783 87556938 -89417202 + L2 LINE L2 2705 2864 -449 1918 133 0 0 chrX 87556938 87557202 -89416938 + AluSx SINE Alu 1 264 -48 345 47 0 0 chrX 87557212 87557255 -89416885 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1494 275 18 57 chrX 87557255 87557720 -89416420 + L2 LINE L2 2873 3313 0 1247 282 96 12 chrX 87557750 87558340 -89415800 + L2 LINE L2 2677 3313 0 1871 188 43 6 chrX 87558401 87558753 -89415387 - MLT1A1 LTR MaLR 0 365 1 460 269 10 81 chrX 87558817 87559014 -89415126 + LTR67 LTR ERVL 375 557 0 2799 331 58 25 chrX 87559250 87560461 -89413679 + HERVL LTR ERVL 3086 4255 -1358 1917 112 30 0 chrX 87560461 87560728 -89413412 - AluSx SINE Alu -3 309 35 437 0 19 0 chrX 87560733 87560786 -89413354 + (TTA)n Simple_repeat Simple_repeat 2 55 0 2799 331 58 25 chrX 87560786 87561422 -89412718 + HERVL LTR ERVL 4258 5049 -564 1224 213 169 53 chrX 87561531 87562080 -89412060 + MER39 LTR ERV1 12 707 0 689 261 17 0 chrX 87562080 87562260 -89411880 + HERVL LTR ERVL 5198 5380 -384 22 70 0 0 chrX 87562613 87562656 -89411484 + AT_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chrX 87563310 87563350 -89410790 + AT_rich Low_complexity Low_complexity 1 40 0 281 280 11 32 chrX 87565200 87565293 -89408847 - MER5A DNA MER1_type -3 186 96 450 141 0 0 chrX 87566553 87566631 -89407509 + MADE1 DNA Mariner 1 78 -2 702 19 94 10 chrX 87567626 87567829 -89406311 + (TA)n Simple_repeat Simple_repeat 1 220 0 346 319 9 0 chrX 87568023 87568136 -89406004 + MER81 DNA DNA 1 114 0 21 0 0 0 chrX 87568584 87568605 -89405535 + AT_rich Low_complexity Low_complexity 1 21 0 301 301 0 0 chrX 87568746 87568819 -89405321 + L2 LINE L2 3241 3313 0 184 275 0 0 chrX 87568859 87568899 -89405241 - L2 LINE L2 -10 3262 3223 14778 53 10 2 chrX 87569004 87570857 -89403283 + L1P LINE L1 1 1867 -4279 6413 21 6 5 chrX 87570829 87571843 -89402297 + L1PA3 LINE L1 4999 6013 -142 * 1166 42 0 0 chrX 87571963 87572105 -89402035 + L1PA3 LINE L1 6011 6152 -3 364 278 106 45 chrX 87572161 87572406 -89401734 - L1ME4a LINE L1 -95 6026 5767 1866 171 0 7 chrX 87572581 87572890 -89401250 - AluJo SINE Alu -2 310 4 183 367 111 33 chrX 87573044 87573224 -89400916 - L3 LINE CR1 -1192 385 192 1214 183 95 12 chrX 87573474 87573715 -89400425 - MSTA LTR MaLR 0 428 168 208 293 106 72 chrX 87575881 87576089 -89398051 - L2 LINE L2 -419 2895 2681 462 125 10 67 chrX 87576381 87576485 -89397655 - AluSc SINE Alu 0 309 212 270 154 39 0 chrX 87577237 87577289 -89396851 + MSTA LTR MaLR 1 54 -374 2009 118 3 14 chrX 87577442 87577738 -89396402 + AluSx SINE Alu 1 293 -19 1035 276 114 5 chrX 87577909 87578333 -89395807 - L1ME4a LINE L1 -362 5802 5339 1578 236 52 24 chrX 87578354 87578850 -89395290 - Charlie7 DNA MER1_type -672 1940 1431 603 345 41 30 chrX 87579286 87579625 -89394515 + MLT1K LTR MaLR 146 488 -100 1487 127 45 0 chrX 87579651 87579918 -89394222 - L1MA7 LINE L1 -2 6289 6011 3750 146 27 9 chrX 87579920 87580612 -89393528 - L1MA7 LINE L1 -366 5925 5222 1392 194 59 0 chrX 87580615 87580888 -89393252 + L1 LINE L1 4868 5156 -990 235 254 70 0 chrX 87580894 87580965 -89393175 + MLT1K LTR MaLR 494 569 -19 345 229 115 0 chrX 87581190 87581286 -89392854 + MLT1J2 LTR MaLR 344 450 0 4272 196 41 29 chrX 87581525 87582048 -89392092 - L1MB8 LINE L1 -5 6173 5658 888 133 0 15 chrX 87582048 87582183 -89391957 - FLAM_C SINE Alu 0 133 1 4272 196 41 29 chrX 87582183 87583614 -89390526 - L1MB8 LINE L1 -520 5658 4196 211 260 302 31 chrX 87584409 87584505 -89389635 + MIR SINE MIR 49 170 -92 759 324 49 54 chrX 87584933 87585381 -89388759 + MLT1K LTR MaLR 143 588 0 1287 220 26 0 chrX 87586171 87586444 -89387696 + MER58 DNA MER1_type 2 281 -60 489 311 182 0 chrX 87586520 87586729 -89387411 + MIR SINE MIR 14 260 -2 2147 62 33 4 chrX 87586921 87587238 -89386902 - AluY SINE Alu 0 325 1 25 0 0 0 chrX 87589627 87589652 -89384488 + AT_rich Low_complexity Low_complexity 1 25 0 6179 88 17 2 chrX 87589660 87590593 -89383547 + L1PA13 LINE L1 5203 6148 -15 189 256 116 0 chrX 87591042 87591128 -89383012 + MIR SINE MIR 117 212 -50 1904 147 109 3 chrX 87591287 87591607 -89382533 - MLT1A1 LTR MaLR -11 354 1 2350 98 3 0 chrX 87592061 87592368 -89381772 - AluSq SINE Alu -5 308 1 675 351 12 4 chrX 87593579 87593821 -89380319 + MIR SINE MIR 19 262 0 887 339 42 31 chrX 87593978 87594403 -89379737 - LTR16B LTR ERVL 0 464 35 1475 253 52 38 chrX 87594661 87595340 -89378800 - L1MB8 LINE L1 -2902 3244 2557 1226 194 43 18 chrX 87595344 87595623 -89378517 - MLT1A1 LTR MaLR 0 365 80 294 323 15 23 chrX 87595623 87595753 -89378387 + MIR SINE MIR 134 262 0 417 200 0 0 chrX 87595797 87595867 -89378273 - MLT1A1 LTR MaLR -304 70 1 1410 220 12 3 chrX 87596032 87596377 -89377763 - L1MB8 LINE L1 -3642 2504 2157 2027 156 0 7 chrX 87596390 87596697 -89377443 + MER1B DNA MER1_type 35 339 0 5688 255 49 36 chrX 87596697 87597370 -89376770 - L1MEc LINE L1 -4121 2275 1612 562 254 23 0 chrX 87597370 87597500 -89376640 + FLAM_A SINE Alu 1 133 0 5688 255 49 36 chrX 87597500 87598572 -89375568 - L1MEc LINE L1 -4784 1612 494 441 54 0 0 chrX 87598572 87598628 -89375512 + (TA)n Simple_repeat Simple_repeat 2 57 0 5688 255 49 36 chrX 87598628 87599079 -89375061 - L1MEc LINE L1 -5902 494 50 435 235 20 0 chrX 87601160 87601258 -89372882 + MER5A DNA MER1_type 10 109 -80 225 235 265 10 chrX 87601179 87601281 -89372859 - MER5A DNA MER1_type -16 173 46 * 2088 134 7 0 chrX 87601398 87601705 -89372435 + AluSx SINE Alu 1 309 -3 1826 150 6 20 chrX 87601844 87602197 -89371943 - L1MA5 LINE L1 0 6300 5953 258 262 0 16 chrX 87602281 87602342 -89371798 + L2 LINE L2 3254 3313 0 949 279 16 12 chrX 87602634 87602881 -89371259 + MIR SINE MIR 7 254 -8 429 297 57 23 chrX 87605042 87605217 -89368923 + MIR3 SINE MIR 21 201 -7 1589 149 217 11 chrX 87606779 87606946 -89367194 + MSTA LTR MaLR 1 132 -296 468 0 0 0 chrX 87606946 87606998 -89367142 + (TC)n Simple_repeat Simple_repeat 1 52 0 1589 149 217 11 chrX 87606998 87607185 -89366955 + MSTA LTR MaLR 132 428 0 6240 279 66 31 chrX 87607489 87608784 -89365356 - L2 LINE L2 0 3313 2064 752 181 0 158 chrX 87608784 87609043 -89365097 - MER20 DNA MER1_type -1 218 1 6240 279 66 31 chrX 87609043 87609840 -89364300 - L2 LINE L2 -1249 2064 1117 1750 162 61 29 chrX 87609840 87610217 -89363923 - MLT1B LTR MaLR -1 389 1 6240 279 66 31 chrX 87610217 87610552 -89363588 - L2 LINE L2 -2196 1117 795 696 291 27 19 chrX 87610553 87610962 -89363178 + LTR16A LTR ERVL 1 450 0 532 303 56 0 chrX 87610963 87611141 -89362999 + HERV16 LTR ERVL 2 189 -4807 353 125 12 62 chrX 87611512 87611592 -89362548 + L1MB8 LINE L1 5837 5912 -272 595 194 34 40 chrX 87611611 87611786 -89362354 + L1MB8 LINE L1 5999 6172 -6 3125 280 27 39 chrX 87611788 87612794 -89361346 + HERV16 LTR ERVL 587 1580 -3416 290 173 160 27 chrX 87612818 87612893 -89361247 - LTR16A1 LTR ERVL 0 457 373 538 240 23 31 chrX 87612946 87613075 -89361065 - LTR16A1 LTR ERVL -74 383 256 407 336 0 0 chrX 87613089 87613211 -89360929 - MER63A DNA MER1_type -25 185 64 299 157 0 176 chrX 87613211 87613319 -89360821 + MER21B LTR ERV1 1 89 -774 3958 217 32 5 chrX 87613322 87614100 -89360040 + MER21B LTR ERV1 43 841 -22 587 221 124 60 chrX 87614157 87614406 -89359734 - LTR16A1 LTR ERVL -192 265 1 187 220 160 0 chrX 87616533 87616583 -89357557 + L2 LINE L2 3171 3228 -44 * 425 296 102 29 chrX 87616571 87616777 -89357363 + MIR SINE MIR 23 243 -19 32 86 0 0 chrX 87617003 87617084 -89357056 + AT_rich Low_complexity Low_complexity 1 81 0 230 250 0 0 chrX 87617189 87617233 -89356907 + (CATA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chrX 87617341 87617364 -89356776 + AT_rich Low_complexity Low_complexity 1 23 0 1301 199 107 15 chrX 87617374 87617646 -89356494 + AluJo SINE Alu 1 297 -15 314 181 0 14 chrX 87617656 87617728 -89356412 + (TATG)n Simple_repeat Simple_repeat 2 72 0 300 346 8 8 chrX 87617790 87617920 -89356220 - L1ME LINE L1 -298 5823 5694 280 303 46 44 chrX 87617957 87618243 -89355897 + L2 LINE L2 1400 1736 -1578 1296 215 133 14 chrX 87618254 87618608 -89355532 + MSTD LTR MaLR 1 396 0 520 325 51 93 chrX 87618661 87619544 -89354596 + L2 LINE L2 2435 3272 0 1718 343 53 43 chrX 87619550 87620966 -89353174 + L2 LINE L2 1841 3271 -1 193 345 58 0 chrX 87621152 87621239 -89352901 + MIR3 SINE MIR 81 172 -36 195 162 0 0 chrX 87622227 87622264 -89351876 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 991 263 125 28 chrX 87622268 87622701 -89351439 - L2 LINE L2 -1 3312 2838 2126 84 3 14 chrX 87624652 87624980 -89349160 + AluSq SINE Alu 1 325 0 638 373 161 7 chrX 87625006 87625620 -89348520 + L2 LINE L2 2269 2977 -337 2081 144 0 25 chrX 87626634 87626954 -89347186 + AluSx SINE Alu 1 312 0 2329 91 0 3 chrX 87627272 87627570 -89346570 - AluSx SINE Alu -15 297 1 243 61 0 0 chrX 87627768 87627801 -89346339 + (TA)n Simple_repeat Simple_repeat 2 34 0 365 291 45 82 chrX 87627801 87628045 -89346095 + L1MEd LINE L1 935 1169 -4950 2117 124 7 3 chrX 87628107 87628405 -89345735 + AluSx SINE Alu 1 299 -13 775 158 113 45 chrX 87628506 87628728 -89345412 - L1MDa LINE L1 -3563 2977 2741 355 299 0 0 chrX 87628733 87628820 -89345320 + Tigger3b DNA MER2_type 16 102 -1129 * 5771 108 38 12 chrX 87628818 87629752 -89344388 + Tigger3b DNA MER2_type 274 1231 0 2201 235 42 14 chrX 87629755 87630414 -89343726 - L1MDa LINE L1 -4322 2218 1541 1962 66 52 36 chrX 87630420 87630725 -89343415 - MER11A LTR ERVK 0 1266 957 1648 46 40 25 chrX 87630722 87630996 -89343144 - MER11A LTR ERVK -892 374 1 * 1527 232 55 17 chrX 87630997 87631261 -89342879 - L1MDa LINE L1 -5001 1542 1289 2286 82 48 0 chrX 87631261 87631554 -89342586 - AluSc SINE Alu 0 309 3 1527 232 55 17 chrX 87631554 87631819 -89342321 - L1MDa LINE L1 -5254 1289 993 301 343 35 47 chrX 87631894 87632063 -89342077 - L1MDa LINE L1 -5814 726 560 824 278 57 47 chrX 87632732 87633221 -89340919 - L1MDa LINE L1 -6013 527 34 308 276 43 0 chrX 87633536 87633652 -89340488 + L1ME4a LINE L1 5991 6111 -10 1483 131 9 9 chrX 87633957 87634186 -89339954 + AluSq SINE Alu 85 313 0 235 259 37 0 chrX 87634897 87634951 -89339189 + MIR SINE MIR 195 250 -12 218 29 59 0 chrX 87635016 87635050 -89339090 - L2 LINE L2 -8 3305 3270 332 299 51 57 chrX 87635165 87635342 -89338798 + MIR SINE MIR 1 176 -86 185 318 16 0 chrX 87637429 87637492 -89336648 + MIR SINE MIR 85 148 -114 186 209 0 0 chrX 87637603 87637646 -89336494 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chrX 87638369 87638390 -89335750 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 87638557 87638588 -89335552 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chrX 87640374 87640404 -89333736 + AT_rich Low_complexity Low_complexity 1 30 0 890 217 0 30 chrX 87640883 87641027 -89333113 + MER58A DNA MER1_type 1 141 -200 2054 181 3 3 chrX 87641027 87641391 -89332749 - MER47A DNA MER2_type -1 365 2 890 217 0 30 chrX 87641391 87641412 -89332728 + MER58A DNA MER1_type 141 161 -63 2211 116 0 0 chrX 87641427 87641729 -89332411 + AluSg SINE Alu 1 302 -8 462 273 61 49 chrX 87641799 87642228 -89331912 + L1M4 LINE L1 2392 2825 -3321 210 347 60 73 chrX 87643308 87643458 -89330682 + L2 LINE L2 3125 3272 0 1554 155 35 21 chrX 87644774 87644818 -89329322 + MER49 LTR ERV1 1 43 -880 4960 82 3 8 chrX 87644818 87645488 -89328652 - PABL_B LTR ERV1 0 667 1 1554 155 35 21 chrX 87645488 87645733 -89328407 + MER49 LTR ERV1 43 294 -629 3585 157 22 34 chrX 87645786 87646460 -89327680 + MER4D LTR ERV1 238 903 0 3410 60 0 9 chrX 87646556 87647008 -89327132 - LTR7 LTR ERV1 -2 448 1 2557 74 45 13 chrX 87647008 87647388 -89326752 - HERVH LTR ERV1 0 7713 7322 1379 114 18 14 chrX 87647386 87647605 -89326535 - HERVH LTR ERV1 -1894 5819 5600 * 4405 136 1 1 chrX 87647606 87648268 -89325872 - HERVH LTR ERV1 -2564 5149 4488 3399 111 0 6 chrX 87648270 87648775 -89325365 - HERVH LTR ERV1 -3720 3993 3492 1023 107 7 0 chrX 87648765 87648915 -89325225 - HERVH LTR ERV1 -4423 3290 3140 * 20164 96 10 23 chrX 87648894 87651929 -89322211 - HERVH LTR ERV1 -4718 2995 1 3425 60 0 7 chrX 87651931 87652382 -89321758 - LTR7 LTR ERV1 -2 448 1 189 0 0 0 chrX 87653258 87653279 -89320861 + (T)n Simple_repeat Simple_repeat 1 21 0 707 174 109 38 chrX 87653401 87653585 -89320555 - MER21B LTR ERV1 -22 841 645 14062 190 55 24 chrX 87653596 87655629 -89318511 + L1MA1 LINE L1 16 1985 -5736 2303 97 0 7 chrX 87655629 87655928 -89318212 - AluSg SINE Alu -13 297 1 14062 190 55 24 chrX 87655928 87656352 -89317788 + L1MA1 LINE L1 1985 2394 -5327 234 0 0 0 chrX 87656352 87656378 -89317762 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 336 48 0 0 chrX 87656377 87656419 -89317721 + (GA)n Simple_repeat Simple_repeat 2 43 0 14062 190 55 24 chrX 87656378 87656544 -89317596 + L1MA1 LINE L1 2394 2553 -5168 288 0 0 0 chrX 87656544 87656576 -89317564 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 318 50 0 0 chrX 87656575 87656615 -89317525 + (GA)n Simple_repeat Simple_repeat 2 41 0 14062 190 55 24 chrX 87656576 87656834 -89317306 + L1MA1 LINE L1 2553 2802 -4919 2488 67 0 3 chrX 87656834 87657146 -89316994 + AluY SINE Alu 1 311 0 14062 190 55 24 chrX 87657146 87659717 -89314423 + L1MA1 LINE L1 2802 5692 -2029 3363 83 11 0 chrX 87659717 87660165 -89313975 + MLT2A2 LTR ERVL 1 453 0 14062 190 55 24 chrX 87660165 87662260 -89311880 + L1MA1 LINE L1 5692 7721 0 814 171 88 60 chrX 87662276 87662299 -89311841 - MER21B LTR ERV1 -225 638 617 2191 127 7 0 chrX 87662299 87662607 -89311533 + AluSq SINE Alu 1 310 -3 814 171 88 60 chrX 87662607 87662799 -89311341 - MER21B LTR ERV1 -246 617 417 3175 143 8 53 chrX 87662828 87663429 -89310711 - MER4B LTR ERV1 -36 574 1 1875 235 16 30 chrX 87663429 87663855 -89310285 - MER21B LTR ERV1 -443 420 1 12155 197 88 36 chrX 87664145 87670335 -89303805 - L1MA4A LINE L1 -272 6733 1 440 259 163 11 chrX 87671067 87671337 -89302803 + L1ME4a LINE L1 5594 5904 -217 2096 218 21 34 chrX 87671903 87672464 -89301676 + L1MB7 LINE L1 5620 6173 -11 707 254 20 55 chrX 87672933 87673134 -89301006 - MER63A DNA MER1_type 0 210 17 1642 180 120 16 chrX 87673838 87674288 -89299852 - LTR54B LTR ERV1 -1 497 1 1133 218 95 30 chrX 87674576 87674976 -89299164 + LTR37A LTR ERV1 1 426 0 199 209 105 95 chrX 87675481 87675586 -89298554 - MER5B DNA MER1_type 0 178 73 25 31 0 0 chrX 87676718 87676750 -89297390 + AT_rich Low_complexity Low_complexity 1 32 0 480 297 40 0 chrX 87677173 87677321 -89296819 - MIR SINE MIR -4 258 105 233 163 0 0 chrX 87677597 87677640 -89296500 - MARNA DNA Mariner -343 243 201 957 178 61 20 chrX 87677919 87678116 -89296024 + MER3 DNA MER1_type 5 209 0 2020 167 5 38 chrX 87678914 87679286 -89294854 + L1MC1 LINE L1 5 364 -6062 945 228 14 24 chrX 87679283 87679577 -89294563 + L1MC1 LINE L1 3077 3367 -3059 * 6031 158 34 8 chrX 87679580 87680728 -89293412 + L1MC1 LINE L1 5433 6613 0 316 340 19 0 chrX 87680952 87681055 -89293085 - MER5B DNA MER1_type -43 135 31 284 105 0 0 chrX 87681579 87681617 -89292523 + L1MC/D LINE L1 5524 5561 -772 22 56 0 0 chrX 87682900 87682936 -89291204 + AT_rich Low_complexity Low_complexity 1 36 0 13795 25 0 0 chrX 87683217 87685277 -89288863 + L1P1 LINE L1 3736 5794 -361 763 246 26 30 chrX 87685867 87686099 -89288041 - L1MB8 LINE L1 0 6178 5948 253 185 0 37 chrX 87686189 87686243 -89287897 - L2 LINE L2 0 3313 3262 21 36 0 0 chrX 87686549 87686577 -89287563 + AT_rich Low_complexity Low_complexity 1 28 0 720 187 8 0 chrX 87686578 87686701 -89287439 - FLAM_C SINE Alu -18 125 2 22 35 0 0 chrX 87686701 87686730 -89287410 + AT_rich Low_complexity Low_complexity 1 29 0 1600 247 78 37 chrX 87686863 87687643 -89286497 - L2 LINE L2 0 3313 2494 472 354 0 0 chrX 87688776 87688934 -89285206 + MIR SINE MIR 49 206 -56 283 339 44 48 chrX 87688953 87689204 -89284936 - MLT1K LTR MaLR -10 578 329 220 239 28 84 chrX 87689416 87689487 -89284653 - MER5B DNA MER1_type 0 178 112 28 48 0 0 chrX 87689701 87689743 -89284397 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 87689905 87689933 -89284207 + AT_rich Low_complexity Low_complexity 1 28 0 1077 298 120 29 chrX 87689941 87690417 -89283723 - L2 LINE L2 -3 3310 2793 565 191 22 15 chrX 87690427 87690563 -89283577 - Cheshire DNA MER1_type -11 2409 2273 2132 119 0 0 chrX 87690608 87690894 -89283246 - AluSx SINE Alu -22 290 5 1065 97 0 0 chrX 87690918 87691052 -89283088 + AluSp/q SINE Alu 160 293 -20 5581 220 103 26 chrX 87691061 87692406 -89281734 - Cheshire DNA MER1_type -794 1626 152 1950 135 7 3 chrX 87692406 87692702 -89281438 - AluJb SINE Alu -15 297 1 5581 220 103 26 chrX 87692702 87692867 -89281273 - Cheshire DNA MER1_type -2268 152 1 458 240 25 180 chrX 87692867 87693184 -89280956 - L2 LINE L2 -514 2800 2533 21 0 0 0 chrX 87693868 87693889 -89280251 + AT_rich Low_complexity Low_complexity 1 21 0 520 219 65 7 chrX 87693891 87693914 -89280226 - L1MA10 LINE L1 -2 6332 6310 1440 209 119 59 chrX 87693914 87694436 -89279704 - L1ME2 LINE L1 -31 6133 5581 320 244 23 47 chrX 87694443 87694529 -89279611 + MLT1C LTR MaLR 1 84 -421 545 294 89 85 chrX 87694538 87695090 -89279050 + MER34B LTR ERV1 12 565 0 957 257 64 44 chrX 87695090 87695433 -89278707 + MLT1C LTR MaLR 118 467 0 302 203 0 0 chrX 87695436 87695495 -89278645 - L1ME2 LINE L1 -592 5574 5516 * 5713 169 1 11 chrX 87695491 87696526 -89277614 - L1P LINE L1 -1105 5041 4017 1918 197 34 25 chrX 87696531 87697075 -89277065 - MLT2A2 LTR ERVL -4 550 1 1681 148 40 3 chrX 87697075 87697372 -89276768 + MSTB1 LTR MaLR 125 432 0 321 281 16 70 chrX 87697503 87697631 -89276509 + MIR3 SINE MIR 82 202 -6 21 0 0 0 chrX 87697923 87697944 -89276196 + AT_rich Low_complexity Low_complexity 1 21 0 222 355 0 35 chrX 87698034 87698160 -89275980 - MIR SINE MIR -72 136 16 683 156 14 35 chrX 87698286 87698427 -89275713 + Cheshire DNA MER1_type 2084 2221 -199 1476 225 87 6 chrX 87698730 87699076 -89275064 + Cheshire DNA MER1_type 3 376 -2044 * 1670 157 77 26 chrX 87699073 87699424 -89274716 + Cheshire DNA MER1_type 2052 2420 0 27 29 0 0 chrX 87699824 87699858 -89274282 + AT_rich Low_complexity Low_complexity 1 34 0 2080 118 7 10 chrX 87700071 87700376 -89273764 - AluSx SINE Alu -8 304 1 283 408 34 0 chrX 87700599 87700746 -89273394 - L2 LINE L2 -218 3054 2903 224 224 0 35 chrX 87701153 87701211 -89272929 - MIR SINE MIR -63 145 90 318 243 43 0 chrX 87702145 87702215 -89271925 + L2 LINE L2 3225 3297 -16 2257 118 87 6 chrX 87702316 87702663 -89271477 - THE1C LTR MaLR 0 375 1 4114 220 33 1 chrX 87702672 87703587 -89270553 + Charlie1a DNA MER1_type 43 986 -469 2051 122 33 3 chrX 87703624 87703961 -89270179 + L1PB3 LINE L1 5808 6154 0 216 333 40 16 chrX 87703961 87704087 -89270053 - L2 LINE L2 -313 2959 2831 393 339 37 41 chrX 87704205 87704423 -89269717 - L2 LINE L2 -674 2640 2424 466 281 36 48 chrX 87704456 87704621 -89269519 - L1MEc LINE L1 -2641 3574 3411 1504 195 18 0 chrX 87704621 87704903 -89269237 - AluJo SINE Alu -25 287 1 466 281 36 48 chrX 87704903 87704986 -89269154 - L1MEc LINE L1 -2804 3411 3329 284 247 0 35 chrX 87704980 87705065 -89269075 - L1MEc LINE L1 -5117 1279 1198 * 204 135 0 0 chrX 87705074 87705111 -89269029 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 969 245 57 8 chrX 87705114 87705359 -89268781 - MIR SINE MIR 0 262 6 215 266 133 18 chrX 87705541 87705654 -89268486 + L2 LINE L2 1943 2068 -1246 * 347 263 113 32 chrX 87705650 87705836 -89268304 - L2 LINE L2 0 3313 3113 21 36 0 0 chrX 87706104 87706132 -89268008 + AT_rich Low_complexity Low_complexity 1 28 0 37701 47 2 1 chrX 87706132 87711648 -89262492 - L1PA4 LINE L1 -11 6144 623 716 112 0 0 chrX 87711646 87711744 -89262396 - L1PA4 LINE L1 -6048 98 1 * 418 208 84 104 chrX 87711749 87711903 -89262237 - L1P3 LINE L1 -350 5771 5630 204 135 0 0 chrX 87712347 87712384 -89261756 + (TG)n Simple_repeat Simple_repeat 1 37 0 485 283 90 62 chrX 87712820 87713367 -89260773 - L1ME LINE L1 -526 5595 5065 1199 141 12 35 chrX 87713367 87713496 -89260644 - L1MA8 LINE L1 0 6291 6169 1691 188 7 0 chrX 87713496 87713788 -89260352 - AluJb SINE Alu -18 294 1 1199 141 12 35 chrX 87713788 87713913 -89260227 - L1MA8 LINE L1 -122 6169 6043 485 283 90 62 chrX 87713913 87714884 -89259256 - L1ME LINE L1 -1056 5065 4027 336 306 137 20 chrX 87715019 87715267 -89258873 - L1ME LINE L1 -2214 3932 3656 184 310 14 0 chrX 87715314 87715385 -89258755 + MIR SINE MIR 63 134 -128 378 285 84 75 chrX 87715691 87716157 -89257983 - L1ME LINE L1 -2954 3192 2723 246 271 57 21 chrX 87717174 87717366 -89256774 + L1ME3A LINE L1 1315 1513 -4883 1181 268 74 54 chrX 87717367 87718161 -89255979 + L1ME3A LINE L1 4525 5334 -881 1757 271 67 23 chrX 87718195 87718900 -89255240 + L1ME3A LINE L1 5385 6120 -119 22 35 0 0 chrX 87719169 87719198 -89254942 + AT_rich Low_complexity Low_complexity 1 29 0 1256 183 110 14 chrX 87719468 87719758 -89254382 + LTR49 LTR ERV1 1 318 -277 765 81 32 0 chrX 87719759 87719882 -89254258 - AluY SINE Alu 0 311 185 897 240 9 18 chrX 87719901 87720122 -89254018 + LTR29 LTR ERV1 404 622 0 554 245 80 0 chrX 87720208 87720371 -89253769 + MIR SINE MIR 3 178 -84 333 250 12 71 chrX 87720487 87720655 -89253485 - TAR1 Satellite telomeric -1926 185 28 * 2495 184 10 68 chrX 87720508 87720845 -89253295 - LTR60 LTR ERV1 -31 555 265 1276 13 0 0 chrX 87720845 87720994 -89253146 - L1PA4 LINE L1 0 6155 6007 2495 184 10 68 chrX 87720994 87721243 -89252897 - LTR60 LTR ERV1 -321 265 3 298 212 59 59 chrX 87721245 87721330 -89252810 - LTR60-int LTR ERV1 -9 7196 7112 894 160 7 0 chrX 87722098 87722242 -89251898 - MER52-int LTR ERV1 -3681 3856 3712 301 287 55 39 chrX 87722315 87722496 -89251644 - MER52-int LTR ERV1 -1720 6906 6723 2450 243 41 22 chrX 87722677 87723839 -89250301 - MER52-int LTR ERV1 -843 4037 2257 414 246 8 0 chrX 87723847 87723969 -89250171 - MER52-int LTR ERV1 -5035 1961 1734 198 0 0 0 chrX 87725158 87725180 -89248960 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5821 169 10 5 chrX 87725180 87727231 -89246909 - L1PB1 LINE L1 -5 6146 4090 888 220 42 37 chrX 87727259 87727500 -89246640 - MER52-int LTR ERV1 -3476 1322 1081 491 248 68 82 chrX 87727691 87727985 -89246155 - TAR1 Satellite telomeric -1820 291 2 * 2310 189 41 60 chrX 87727806 87728137 -89246003 - LTR60 LTR ERV1 -31 555 238 2333 96 0 3 chrX 87728137 87728440 -89245700 - AluSc SINE Alu -7 302 1 2310 189 41 60 chrX 87728440 87728674 -89245466 - LTR60 LTR ERV1 -348 238 1 263 273 15 0 chrX 87728723 87728789 -89245351 + MIR SINE MIR 196 262 0 447 388 42 48 chrX 87728926 87729261 -89244879 - L2 LINE L2 -8 3264 2932 1266 192 4 2 chrX 87729262 87729568 -89244572 + MLT1A1 LTR MaLR 1 365 0 319 319 22 60 chrX 87729597 87729782 -89244358 + HAL1b LINE L1 552 729 -619 2040 216 81 34 chrX 87729868 87730396 -89243744 - MLT2B3 LTR ERVL -1 553 1 250 239 154 8 chrX 87730653 87730770 -89243370 - MER103 DNA DNA -21 145 12 2198 103 0 0 chrX 87731270 87731560 -89242580 + AluSx SINE Alu 1 290 -22 198 413 22 0 chrX 87731695 87731787 -89242353 + MIR3 SINE MIR 8 101 -107 4410 230 41 15 chrX 87732232 87733943 -89240197 - L1MEc LINE L1 -2340 3875 2042 20443 91 16 19 chrX 87733943 87736976 -89237164 - MER57A-int LTR ERV1 -1735 5802 2777 3870 130 42 29 chrX 87737008 87737828 -89236312 - MER57A-int LTR ERV1 -3929 2017 1083 * 4199 143 8 11 chrX 87737818 87738487 -89235653 - MER57A-int LTR ERV1 -6262 1275 609 2462 174 7 2 chrX 87738596 87739009 -89235131 - MER57A-int LTR ERV1 -7120 417 3 2126 153 47 3 chrX 87739011 87739397 -89234743 - MER57A LTR ERV1 0 403 1 3366 240 30 47 chrX 87739429 87739859 -89234281 + L1MCb LINE L1 77 513 -5578 7898 26 0 0 chrX 87739859 87741560 -89232580 - L1PA3 LINE L1 -5 6150 4450 3366 240 30 47 chrX 87741560 87741848 -89232292 + L1MCb LINE L1 513 804 -5287 2544 99 8 0 chrX 87741848 87742200 -89231940 - THE1A LTR MaLR 0 355 1 10848 103 24 4 chrX 87742200 87743749 -89230391 - THE1A-int LTR MaLR 0 1580 1 2400 109 17 3 chrX 87743750 87744099 -89230041 - THE1A LTR MaLR -1 354 1 3366 240 30 47 chrX 87744099 87744559 -89229581 + L1MCb LINE L1 802 1239 -4852 248 33 0 0 chrX 87744559 87744589 -89229551 - MSTB LTR MaLR -396 30 1 4609 180 63 8 chrX 87744604 87744645 -89229495 + L1MA4 LINE L1 5254 5291 -1009 180 0 0 0 chrX 87744645 87744665 -89229475 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 4609 180 63 8 chrX 87744665 87745615 -89228525 + L1MA4 LINE L1 5291 6300 0 2602 183 28 0 chrX 87745623 87746127 -89228013 + L1MC3 LINE L1 7268 7785 0 24 32 0 0 chrX 87746594 87746625 -89227515 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 87747033 87747055 -89227085 + AT_rich Low_complexity Low_complexity 1 22 0 361 143 0 16 chrX 87747084 87747147 -89226993 + MSTD LTR MaLR 1 62 -334 1215 288 16 22 chrX 87747251 87747619 -89226521 + MSTD LTR MaLR 31 396 0 22 0 0 0 chrX 87747626 87747648 -89226492 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 87747676 87747707 -89226433 + AT_rich Low_complexity Low_complexity 1 31 0 3194 146 6 8 chrX 87747707 87748068 -89226072 - L1PB4 LINE L1 -12 6144 5783 1042 97 0 27 chrX 87748068 87748253 -89225887 + (TA)n Simple_repeat Simple_repeat 1 180 0 3194 146 6 8 chrX 87748253 87748420 -89225720 - L1PB4 LINE L1 -373 5783 5617 311 259 245 7 chrX 87748427 87748574 -89225566 + MIR SINE MIR 79 260 -2 210 91 0 0 chrX 87748833 87748866 -89225274 + (TC)n Simple_repeat Simple_repeat 1 33 0 280 286 0 22 chrX 87748934 87749025 -89225115 + MLT1K LTR MaLR 492 580 -8 220 302 198 0 chrX 87751707 87751823 -89222317 + L2 LINE L2 3175 3313 0 201 375 77 0 chrX 87751999 87752103 -89222037 - L2 LINE L2 -5 3267 3156 575 313 83 23 chrX 87755496 87755796 -89218344 - L3 LINE CR1 -151 1426 1109 295 257 0 14 chrX 87755814 87755888 -89218252 - Tigger5 DNA MER2_type 0 2323 2251 449 215 0 0 chrX 87755910 87755989 -89218151 - Tigger5 DNA MER2_type -2244 79 1 831 134 99 1 chrX 87755991 87756068 -89218072 + Tigger7 DNA MER2_type 1 69 -2418 198 0 0 0 chrX 87756068 87756090 -89218050 + (GA)n Simple_repeat Simple_repeat 1 22 0 831 134 99 1 chrX 87756090 87756233 -89217907 + Tigger7 DNA MER2_type 69 2408 -79 245 138 0 17 chrX 87756242 87756300 -89217840 + (TA)n Simple_repeat Simple_repeat 1 57 0 469 230 0 0 chrX 87756300 87756387 -89217753 + Tigger7 DNA MER2_type 2401 2487 0 593 100 24 56 chrX 87756713 87757048 -89217092 + (TATAA)n Simple_repeat Simple_repeat 1 324 0 194 324 27 45 chrX 87757181 87757292 -89216848 - L3 LINE CR1 -538 1039 931 185 226 0 57 chrX 87757512 87757565 -89216575 - L2 LINE L2 -2 3311 3262 661 313 96 13 chrX 87757613 87757843 -89216297 - L3 LINE CR1 -929 648 400 264 297 69 10 chrX 87758670 87758771 -89215369 + MIR3 SINE MIR 85 191 -17 6321 89 8 1 chrX 87759271 87760920 -89213220 - L1PA13 LINE L1 0 7601 5941 13964 210 32 19 chrX 87761028 87764701 -89209439 - L1PA13 LINE L1 -2029 5555 1933 2500 109 14 0 chrX 87764701 87765060 -89209080 - THE1B LTR MaLR 0 364 1 9469 112 54 42 chrX 87765060 87766622 -89207518 - THE1B-int LTR MaLR 0 1580 1 2487 119 11 0 chrX 87766622 87766982 -89207158 - THE1B LTR MaLR 0 364 1 13964 210 32 19 chrX 87766982 87767448 -89206692 - L1PA13 LINE L1 -5650 1934 6 306 336 39 16 chrX 87767512 87767640 -89206500 + MIR SINE MIR 20 150 -58 1973 202 74 7 chrX 87767817 87768252 -89205888 - MLT2C2 LTR ERVL 0 464 1 365 205 13 13 chrX 87770354 87770432 -89203708 + MER94 DNA DNA 1 78 -56 476 102 41 10 chrX 87770852 87770950 -89203190 + CT-rich Low_complexity Low_complexity 3 103 0 200 119 0 48 chrX 87771054 87771096 -89203044 + (TTCCC)n Simple_repeat Simple_repeat 2 41 0 856 208 0 0 chrX 87771096 87771255 -89202885 - AluJb SINE Alu -6 306 148 1296 49 0 22 chrX 87771263 87771447 -89202693 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 308 156 0 0 chrX 87772345 87772390 -89201750 + MLT1C LTR MaLR 423 467 0 304 336 82 0 chrX 87772423 87772545 -89201595 + L1ME LINE L1 485 616 -5503 735 235 0 0 chrX 87772550 87772686 -89201454 - FLAM_A SINE Alu -6 136 1 282 275 47 34 chrX 87772726 87772875 -89201265 + L1ME LINE L1 657 807 -5312 348 319 24 12 chrX 87773609 87773775 -89200365 + L1ME LINE L1 2295 2462 -3667 772 284 131 36 chrX 87773794 87774664 -89199476 + L1ME LINE L1 2522 3474 -2655 22 0 0 0 chrX 87824900 87824922 -89149218 + AT_rich Low_complexity Low_complexity 1 22 0 1159 282 107 15 chrX 87825084 87825478 -89148662 + L1MCb LINE L1 83 512 -5613 1901 201 18 23 chrX 87825707 87826096 -89148044 - MSTD LTR MaLR 0 396 10 677 347 14 18 chrX 87826142 87826644 -89147496 + L1ME LINE L1 4676 5175 -954 6843 213 25 19 chrX 87826774 87828224 -89145916 + L1MA2 LINE L1 15 1474 -6091 10538 168 19 17 chrX 87828227 87831468 -89142672 + L1MA2 LINE L1 4476 7723 0 255 290 0 0 chrX 87831521 87831583 -89142557 + L1ME LINE L1 5562 5623 -530 334 274 0 0 chrX 87831780 87831853 -89142287 - MER5C DNA MER1_type -248 76 4 260 238 0 0 chrX 87831896 87831959 -89142181 + L1M1 LINE L1 5713 5775 -527 1815 204 17 27 chrX 87832014 87832425 -89141715 + LTR52 LTR ERVL 14 420 -1 208 341 0 66 chrX 87832539 87832630 -89141510 + L2 LINE L2 2978 3062 -251 23 68 0 0 chrX 87832779 87832823 -89141317 + AT_rich Low_complexity Low_complexity 1 44 0 1378 247 62 33 chrX 87833074 87833528 -89140612 + MLT1C LTR MaLR 1 467 0 884 383 31 18 chrX 87833709 87834429 -89139711 + HERVL LTR ERVL 3637 4365 -1289 1643 216 31 7 chrX 87834525 87834969 -89139171 + L1MCb LINE L1 1095 1549 -4993 548 228 35 32 chrX 87834953 87835163 -89138977 + L1MCb LINE L1 3391 3600 -3044 * 4998 193 23 38 chrX 87835171 87836226 -89137914 + L1MB4 LINE L1 4114 5145 -1038 3436 44 2 2 chrX 87836226 87836683 -89137457 + L1PA7 LINE L1 5705 6161 0 4998 193 23 38 chrX 87836683 87836987 -89137153 + L1MB4 LINE L1 5145 5452 -731 246 143 48 0 chrX 87836990 87837032 -89137108 + MLT1A2 LTR MaLR 331 374 0 1953 174 15 10 chrX 87837033 87837423 -89136717 + L1MB4 LINE L1 5787 6178 -2 308 382 27 21 chrX 87837584 87837770 -89136370 - MER5A DNA MER1_type -2 187 1 384 148 0 0 chrX 87838095 87838156 -89135984 - L1PA16 LINE L1 -11 6155 6095 * 1087 173 23 1 chrX 87838131 87838344 -89135796 - L1PA16 LINE L1 -74 6087 5868 243 326 51 41 chrX 87838481 87838579 -89135561 + L2 LINE L2 3122 3220 -52 309 282 68 8 chrX 87839509 87839626 -89134514 + MIR SINE MIR 80 203 -59 1278 277 44 73 chrX 87839803 87840326 -89133814 + L2 LINE L2 2806 3313 0 758 275 96 4 chrX 87840327 87840556 -89133584 - MIR SINE MIR -11 251 2 399 275 215 0 chrX 87840568 87840717 -89133423 - MIR SINE MIR -13 249 69 240 306 35 12 chrX 87840958 87841043 -89133097 - MIR SINE MIR -85 123 37 1661 150 80 3 chrX 87841201 87841514 -89132626 + MER1B DNA MER1_type 1 337 0 883 294 24 0 chrX 87843045 87843293 -89130847 + MIR SINE MIR 3 256 -6 762 284 22 39 chrX 87843846 87843974 -89130166 + MIR SINE MIR 35 159 -103 2108 143 83 10 chrX 87843974 87844373 -89129767 + MSTA LTR MaLR 1 428 0 762 284 22 39 chrX 87844373 87844476 -89129664 + MIR SINE MIR 159 262 0 238 308 64 0 chrX 87844511 87844589 -89129551 - MIR SINE MIR -111 151 69 273 196 98 49 chrX 87845150 87845211 -89128929 - MER103 DNA DNA -7 159 94 385 179 26 0 chrX 87845211 87845289 -89128851 - MLT1K LTR MaLR 0 588 509 362 243 0 39 chrX 87845289 87845314 -89128826 - LTR67 LTR ERVL 0 557 459 283 256 14 14 chrX 87845544 87845641 -89128499 - MER5A DNA MER1_type -78 106 4 1912 172 49 6 chrX 87845839 87846188 -89127952 + MLT1A1 LTR MaLR 1 364 -1 268 205 39 39 chrX 87846257 87846335 -89127805 - MER103 DNA DNA -81 85 8 504 248 50 0 chrX 87846618 87846759 -89127381 - MER103 DNA DNA -6 160 13 336 143 0 0 chrX 87848258 87848314 -89125826 + (CA)n Simple_repeat Simple_repeat 1 56 0 615 52 104 5 chrX 87849638 87850030 -89124110 + (TA)n Simple_repeat Simple_repeat 1 430 0 213 104 78 0 chrX 87850060 87850137 -89124003 + (TA)n Simple_repeat Simple_repeat 1 83 0 195 42 0 0 chrX 87850137 87850161 -89123979 + (GA)n Simple_repeat Simple_repeat 2 25 0 428 343 60 12 chrX 87850301 87850552 -89123588 + L1ME4a LINE L1 5381 5643 -478 3315 69 2 39 chrX 87850569 87851030 -89123110 + MLT2A1 LTR ERVL 1 444 0 43412 78 7 1 chrX 87851030 87856652 -89117488 + HERVL-A1-A1 LTR ERVL 1 5654 0 3440 81 0 2 chrX 87856652 87857097 -89117043 + MLT2A1 LTR ERVL 1 444 0 310 248 183 30 chrX 87857122 87857324 -89116816 + L1ME4a LINE L1 5683 5915 -206 197 340 90 50 chrX 87857397 87857597 -89116543 - L2 LINE L2 -168 3104 2897 282 354 88 0 chrX 87857614 87857727 -89116413 - L2 LINE L2 -561 2753 2631 198 259 0 17 chrX 87857858 87857916 -89116224 + L2 LINE L2 3244 3300 -13 1477 173 83 20 chrX 87858391 87858743 -89115397 - MER47B DNA MER2_type 0 418 1 21 82 0 0 chrX 87858955 87859004 -89115136 + AT_rich Low_complexity Low_complexity 1 49 0 3423 121 39 3 chrX 87860297 87860893 -89113247 - L1PBa LINE L1 -4548 2315 1699 1516 116 62 0 chrX 87860910 87861151 -89112989 + L1PBa LINE L1 1 256 -6607 * 11741 183 18 36 chrX 87861145 87861661 -89112479 - L1 LINE L1 -1256 6309 5785 438 86 0 0 chrX 87861661 87861748 -89112392 - Alu SINE Alu 0 310 224 11741 183 18 36 chrX 87861748 87863805 -89110335 - L1 LINE L1 -1780 5785 3761 13617 24 5 0 chrX 87863805 87866174 -89107966 + L1PA3 LINE L1 3777 6150 -5 11741 183 18 36 chrX 87866174 87867089 -89107051 - L1 LINE L1 -3804 3761 2831 6128 217 94 15 chrX 87867102 87867410 -89106730 - L1 LINE L1 -6076 1489 1207 2117 141 125 8 chrX 87867410 87867793 -89106347 - MSTA LTR MaLR 0 428 1 6128 217 94 15 chrX 87867793 87868850 -89105290 - L1 LINE L1 -6358 1207 16 729 244 42 6 chrX 87868850 87869018 -89105122 - MSTD LTR MaLR -220 176 3 236 91 0 0 chrX 87869290 87869323 -89104817 + MER11A LTR ERVK 1 33 -1233 279 349 18 9 chrX 87871210 87871319 -89102821 - L2 LINE L2 0 3313 3204 673 282 110 4 chrX 87871331 87871558 -89102582 + MIR SINE MIR 12 262 0 184 323 30 120 chrX 87871570 87871737 -89102403 - L2 LINE L2 -107 3165 3014 1911 117 0 69 chrX 87871897 87872214 -89101926 + AluSx SINE Alu 1 295 -17 545 251 90 18 chrX 87874250 87874417 -89099723 - MIR SINE MIR 0 262 84 252 366 40 0 chrX 87875291 87875392 -89098748 + L2 LINE L2 3163 3267 -5 459 300 125 42 chrX 87875562 87875802 -89098338 - MIR SINE MIR -2 260 1 261 0 0 0 chrX 87876257 87876286 -89097854 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 87876738 87876761 -89097379 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 87877095 87877116 -89097024 + AT_rich Low_complexity Low_complexity 1 21 0 2242 117 0 0 chrX 87877931 87878240 -89095900 + AluSg SINE Alu 1 309 -1 351 0 0 0 chrX 87878883 87878922 -89095218 + (TG)n Simple_repeat Simple_repeat 2 40 0 5767 147 25 29 chrX 87878922 87880623 -89093517 - L1PA15 LINE L1 -11 6154 4470 2548 153 50 7 chrX 87881345 87881782 -89092358 + MER74C LTR ERVL 1 456 -4 810 277 44 17 chrX 87881864 87882110 -89092030 + MIR SINE MIR 9 262 0 2910 72 0 0 chrX 87882580 87882955 -89091185 - L1PA7 LINE L1 -11 6143 5769 225 146 0 0 chrX 87882955 87883003 -89091137 + (T)n Simple_repeat Simple_repeat 1 48 0 43117 31 21 1 chrX 87883003 87889023 -89085117 - L1PA2 LINE L1 0 6155 13 30964 112 15 60 chrX 87889024 87895077 -89079063 - L1PA7 LINE L1 -369 5785 12 243 349 24 24 chrX 87895595 87895678 -89078462 - L3 LINE CR1 -15 1562 1480 199 329 103 27 chrX 87895981 87896127 -89078013 - L2 LINE L2 -435 2879 2723 569 332 102 15 chrX 87896127 87896461 -89077679 - L3 LINE CR1 -251 1326 964 432 309 126 22 chrX 87896480 87896703 -89077437 - MLT1I LTR MaLR -2 407 162 994 316 138 45 chrX 87896845 87897512 -89076628 - L3 LINE CR1 -669 908 180 3979 171 126 12 chrX 87897881 87898789 -89075351 - L1MA4A LINE L1 -23 6280 5270 * 7635 221 31 33 chrX 87898779 87899693 -89074447 - L1M4 LINE L1 -891 6317 5403 1247 172 4 22 chrX 87899693 87899920 -89074220 + AluJo SINE Alu 87 309 -3 7635 221 31 33 chrX 87899920 87903831 -89070309 - L1M4 LINE L1 -1805 5403 1423 756 313 16 8 chrX 87904216 87904459 -89069681 - L1M4 LINE L1 -6566 643 399 * 12046 205 20 30 chrX 87904453 87908139 -89066001 - L1PA12 LINE L1 -1720 5864 2225 373 107 29 136 chrX 87908139 87908242 -89065898 + THE1A LTR MaLR 1 92 -263 9877 109 7 1 chrX 87908242 87909599 -89064541 + THE1B-int LTR MaLR 216 1580 0 2017 124 75 23 chrX 87909599 87909945 -89064195 + THE1B LTR MaLR 1 364 0 2920 274 34 65 chrX 87909945 87911256 -89062884 - L1PA12 LINE L1 -5352 2229 959 1321 150 8 26 chrX 87911254 87911430 -89062710 - L1PA12 LINE L1 -7351 230 57 * 2108 165 62 7 chrX 87911430 87911836 -89062304 + MSTA LTR MaLR 1 428 0 1321 150 8 26 chrX 87911836 87911893 -89062247 - L1PA12 LINE L1 -7524 57 1 1162 312 60 31 chrX 87912590 87913177 -89060963 + L1MC/D LINE L1 242 845 -5274 483 242 0 0 chrX 87913354 87913445 -89060695 + MER58A DNA MER1_type 1 91 -16 1279 251 71 51 chrX 87913503 87914009 -89060131 + MLT2B1 LTR ERVL 5 520 0 608 259 22 0 chrX 87914009 87914144 -89059996 + MER58A DNA MER1_type 86 223 -1 28 71 0 0 chrX 87914436 87914492 -89059648 + AT_rich Low_complexity Low_complexity 1 56 0 1645 285 70 37 chrX 87914520 87915810 -89058330 + L1MC/D LINE L1 3306 4637 -1492 239 171 0 0 chrX 87915812 87915853 -89058287 - MLT2B1 LTR ERVL 0 515 475 307 344 0 0 chrX 87915860 87915950 -89058190 + (CA)n Simple_repeat Simple_repeat 2 91 0 1567 195 148 75 chrX 87915950 87916375 -89057765 - MLT2B1 LTR ERVL -62 458 3 383 256 143 55 chrX 87916376 87916942 -89057198 + L1MC/D LINE L1 4635 5250 -879 303 252 66 26 chrX 87916963 87917114 -89057026 + L1MC/D LINE L1 5311 5467 -2324 28 0 0 0 chrX 87917185 87917213 -89056927 + AT_rich Low_complexity Low_complexity 1 28 0 361 101 14 14 chrX 87917228 87917297 -89056843 - L1MA2 LINE L1 0 6304 6236 7080 184 25 9 chrX 87917297 87920183 -89053957 + L1M1 LINE L1 2382 5316 -2249 * 11036 203 25 45 chrX 87920172 87921312 -89052828 - L1M1 LINE L1 -5182 2383 1222 2259 123 0 0 chrX 87921312 87921622 -89052518 - AluSx SINE Alu -2 310 1 11036 203 25 45 chrX 87921622 87922719 -89051421 - L1M1 LINE L1 -6343 1222 195 183 42 0 0 chrX 87922719 87922743 -89051397 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 11036 203 25 45 chrX 87922743 87922924 -89051216 - L1M1 LINE L1 -7370 195 12 257 266 114 52 chrX 87922924 87923213 -89050927 - L1ME3A LINE L1 -222 5948 5642 993 213 32 5 chrX 87923234 87923455 -89050685 + L1M1 LINE L1 16 242 -7323 * 3526 107 6 0 chrX 87923453 87923950 -89050190 - THE1B-int LTR MaLR -1080 500 1 2176 131 48 14 chrX 87923950 87924302 -89049838 - THE1B LTR MaLR 0 364 1 2146 140 31 8 chrX 87924460 87924816 -89049324 + THE1B LTR MaLR 1 364 0 21 36 0 0 chrX 87924896 87924924 -89049216 + AT_rich Low_complexity Low_complexity 1 28 0 1548 218 57 11 chrX 87925949 87926298 -89047842 - MLT1A1 LTR MaLR 0 365 1 384 40 0 0 chrX 87926686 87926736 -89047404 + (CA)n Simple_repeat Simple_repeat 2 51 0 192 77 0 0 chrX 87926737 87926763 -89047377 + (GA)n Simple_repeat Simple_repeat 1 26 0 23 33 0 0 chrX 87927726 87927756 -89046384 + AT_rich Low_complexity Low_complexity 1 30 0 2277 99 3 3 chrX 87927864 87928168 -89045972 - AluSq SINE Alu -9 304 1 25 65 0 0 chrX 87928533 87928579 -89045561 + AT_rich Low_complexity Low_complexity 1 46 0 2546 194 89 19 chrX 87928768 87929098 -89045042 - L1MB7 LINE L1 0 6184 5879 2446 75 0 3 chrX 87929098 87929405 -89044735 - AluY SINE Alu -5 306 1 2546 194 89 19 chrX 87929405 87929668 -89044472 - L1MB7 LINE L1 -305 5879 5549 30 0 0 0 chrX 87930117 87930147 -89043993 + AT_rich Low_complexity Low_complexity 1 30 0 1898 239 68 78 chrX 87931154 87931745 -89042395 - MLT1E LTR MaLR -1 592 8 181 277 15 31 chrX 87933034 87933099 -89041041 + L3 LINE CR1 638 701 -876 1500 196 13 42 chrX 87933244 87933555 -89040585 - AluSx SINE Alu -10 302 1 225 0 0 0 chrX 87934086 87934111 -89040029 + (CA)n Simple_repeat Simple_repeat 1 25 0 300 264 104 56 chrX 87934207 87934351 -89039789 - MIR3 SINE MIR -6 202 52 1411 132 128 12 chrX 87934351 87934594 -89039546 - AluSg SINE Alu -17 293 23 479 352 106 0 chrX 87934849 87935048 -89039092 - MIR SINE MIR -21 241 22 25 0 0 0 chrX 87935533 87935558 -89038582 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chrX 87935968 87935994 -89038146 + AT_rich Low_complexity Low_complexity 1 26 0 539 307 70 33 chrX 87936109 87936568 -89037572 - L1MC/D LINE L1 -2078 5730 5255 1264 147 9 39 chrX 87936894 87937008 -89037132 - MER96B DNA MER1_type? -180 237 132 2198 78 46 0 chrX 87937008 87937289 -89036851 - AluSg SINE Alu -14 296 3 1264 147 9 39 chrX 87937289 87937405 -89036735 - MER96B DNA MER1_type? -285 132 14 2287 283 45 52 chrX 87937417 87938465 -89035675 + L2 LINE L2 2109 3131 -182 405 0 0 0 chrX 87938465 87938510 -89035630 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 283 45 52 chrX 87938510 87938692 -89035448 + L2 LINE L2 3131 3313 0 542 236 50 34 chrX 87938985 87939142 -89034998 + MIR SINE MIR 52 205 -57 212 371 9 0 chrX 87939170 87939275 -89034865 - MIR SINE MIR -10 252 147 24 0 0 0 chrX 87940069 87940093 -89034047 + AT_rich Low_complexity Low_complexity 1 24 0 14331 176 28 7 chrX 87940099 87940647 -89033493 - L1MA2 LINE L1 0 7723 7188 2081 138 26 32 chrX 87940647 87941024 -89033116 + THE1C LTR MaLR 1 375 0 14331 176 28 7 chrX 87941024 87944453 -89029687 - L1MA2 LINE L1 -535 7188 3575 2274 97 10 0 chrX 87944453 87944751 -89029389 - AluSq SINE Alu -10 303 3 14331 176 28 7 chrX 87944751 87946610 -89027530 - L1MA2 LINE L1 -4148 3575 1756 1799 154 41 35 chrX 87946615 87946984 -89027156 - THE1C LTR MaLR -4 371 1 9732 138 10 32 chrX 87946984 87948597 -89025543 - THE1C-int LTR MaLR 0 1580 3 2141 144 36 17 chrX 87948599 87948960 -89025180 - THE1C LTR MaLR 0 375 8 8164 214 63 6 chrX 87948963 87950623 -89023517 - L1MA2 LINE L1 -5798 1767 14 220 278 83 83 chrX 87952016 87952124 -89022016 + L2 LINE L2 3122 3229 -43 373 332 164 30 chrX 87952129 87952433 -89021707 + MLT1H LTR MaLR 10 354 -195 21 36 0 0 chrX 87952755 87952783 -89021357 + AT_rich Low_complexity Low_complexity 1 28 0 365 307 141 0 chrX 87952849 87953012 -89021128 - MIR SINE MIR -11 251 66 221 328 16 0 chrX 87953248 87953309 -89020831 - L2 LINE L2 -13 3300 3239 387 269 70 19 chrX 87953320 87953476 -89020664 + L1MC4a LINE L1 2006 2169 -4227 1190 272 55 2 chrX 87953519 87953920 -89020220 + L1MC4a LINE L1 2218 2639 -3576 546 67 0 0 chrX 87953963 87954038 -89020102 + (TA)n Simple_repeat Simple_repeat 1 75 0 28 29 0 0 chrX 87954185 87954220 -89019920 + AT_rich Low_complexity Low_complexity 1 35 0 267 268 15 25 chrX 87954549 87954652 -89019488 + MER58 DNA MER1_type 1 283 -58 208 210 16 16 chrX 87955007 87955069 -89019071 + (TA)n Simple_repeat Simple_repeat 1 62 0 458 279 72 94 chrX 87955770 87955913 -89018227 + L1MC4a LINE L1 3873 4018 -2197 3696 151 14 11 chrX 87955913 87956551 -89017589 - L1PA15 LINE L1 -4 6161 5522 458 279 72 94 chrX 87956551 87956769 -89017371 + L1MC4a LINE L1 4018 4226 -1989 323 298 89 24 chrX 87957271 87957519 -89016621 + L1MC4a LINE L1 4252 4515 -1700 3498 167 17 65 chrX 87957549 87957938 -89016202 + L1PA16 LINE L1 4697 5103 -1063 2676 17 0 0 chrX 87957938 87958238 -89015902 + AluYa5 SINE Alu 1 300 -11 3498 167 17 65 chrX 87958238 87959063 -89015077 + L1PA16 LINE L1 5103 5838 -328 2356 81 64 3 chrX 87959068 87959412 -89014728 - L1PA7 LINE L1 -13 6141 5777 626 62 0 0 chrX 87959412 87959490 -89014650 + L1M3 LINE L1 5649 5727 -428 1681 146 48 30 chrX 87959490 87959824 -89014316 + L1PA16 LINE L1 5825 6166 0 554 347 84 34 chrX 87959913 87960535 -89013605 + L1MC4a LINE L1 4646 5298 -917 1107 271 24 87 chrX 87960618 87961363 -89012777 + L1MC4a LINE L1 5368 6101 -89 220 350 17 26 chrX 87961587 87961704 -89012436 - MIR SINE MIR -1 261 146 * 581 292 34 30 chrX 87961697 87961930 -89012210 - MIR SINE MIR -26 236 3 1515 257 32 64 chrX 87964086 87964646 -89009494 + MLT1F1 LTR MaLR 1 567 0 1439 231 62 33 chrX 87965514 87965964 -89008176 - MLT1C LTR MaLR 0 467 5 1692 95 0 4 chrX 87966348 87966579 -89007561 + MER30 DNA MER1_type 1 230 0 772 296 57 33 chrX 87966731 87967120 -89007020 + L1ME4a LINE L1 5490 5887 -234 27 0 0 0 chrX 87967256 87967283 -89006857 + AT_rich Low_complexity Low_complexity 1 27 0 1353 187 76 0 chrX 87967647 87967774 -89006366 + AluJb SINE Alu 3 119 -193 248 0 31 0 chrX 87967774 87967806 -89006334 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1353 187 76 0 chrX 87967806 87967940 -89006200 + AluJb SINE Alu 119 284 -28 26 0 0 0 chrX 87968556 87968582 -89005558 + AT_rich Low_complexity Low_complexity 1 26 0 295 288 51 17 chrX 87968870 87968988 -89005152 + MIR SINE MIR 81 202 -60 23 0 0 0 chrX 87969626 87969649 -89004491 + AT_rich Low_complexity Low_complexity 1 23 0 2460 117 13 16 chrX 87970497 87970872 -89003268 + THE1C LTR MaLR 1 374 -1 9855 115 28 38 chrX 87970874 87972469 -89001671 + THE1C-int LTR MaLR 2 1580 0 2466 91 19 19 chrX 87972469 87972844 -89001296 + THE1C LTR MaLR 1 375 0 224 193 123 0 chrX 87973411 87973468 -89000672 + L2 LINE L2 3206 3269 -3 288 307 0 45 chrX 87975254 87975342 -88998798 + MIR SINE MIR 45 128 -80 2998 198 7 31 chrX 87975342 87975948 -88998192 - LTR39 LTR ERV1 0 783 193 425 298 175 73 chrX 87975975 87976374 -88997766 + MLT1K LTR MaLR 80 519 -69 204 158 0 0 chrX 87976384 87976422 -88997718 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2404 73 3 19 chrX 87978670 87978986 -88995154 + AluY SINE Alu 1 311 0 595 306 73 20 chrX 87979182 87979973 -88994167 - L1ME3A LINE L1 -213 5940 4988 589 273 128 34 chrX 87980142 87980492 -88993648 + MLT1G LTR MaLR 21 358 -232 234 227 11 91 chrX 87980547 87980635 -88993505 + MLT1G LTR MaLR 475 555 0 352 241 45 27 chrX 87980668 87980780 -88993360 + MIR SINE MIR 91 204 -58 338 301 16 43 chrX 87980835 87981091 -88993049 - L1ME3A LINE L1 -1367 4762 4514 843 196 0 0 chrX 87981128 87981271 -88992869 - MER58B DNA MER1_type -1 340 198 2131 65 0 29 chrX 87981494 87981770 -88992370 - AluY SINE Alu -8 303 36 274 253 14 103 chrX 87981883 87982029 -88992111 - L1ME3A LINE L1 -5301 818 686 23 54 0 0 chrX 87982412 87982449 -88991691 + AT_rich Low_complexity Low_complexity 1 37 0 293 297 41 40 chrX 87982450 87982610 -88991530 - L1ME LINE L1 -503 5618 5453 198 0 0 0 chrX 87983451 87983473 -88990667 + (A)n Simple_repeat Simple_repeat 1 22 0 23 68 0 0 chrX 87983888 87983932 -88990208 + AT_rich Low_complexity Low_complexity 1 44 0 5428 162 17 17 chrX 87984594 87986161 -88987979 + L1PA16 LINE L1 4569 6145 -21 228 35 0 0 chrX 87986167 87986196 -88987944 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 725 258 32 5 chrX 87986209 87986395 -88987745 + MIR SINE MIR 72 262 0 241 245 0 0 chrX 87987172 87987225 -88986915 - L2 LINE L2 0 3313 3261 309 217 0 29 chrX 87987608 87987677 -88986463 + 7SK RNA RNA 126 192 -1 1548 204 6 16 chrX 87987845 87988158 -88985982 - AluJo SINE Alu -2 310 1 600 271 30 12 chrX 87992340 87992506 -88981634 - MIR SINE MIR -73 189 21 32 26 0 0 chrX 87992771 87992810 -88981330 + AT_rich Low_complexity Low_complexity 1 39 0 229 284 75 15 chrX 87993088 87993222 -88980918 + MLT1K LTR MaLR 375 516 -72 311 289 48 19 chrX 87993964 87994068 -88980072 - MIR SINE MIR -128 134 28 196 153 12 59 chrX 87994127 87994212 -88979928 + GA-rich Low_complexity Low_complexity 1 81 0 191 345 92 8 chrX 87995157 87995276 -88978864 - L2 LINE L2 -212 3060 2932 463 335 115 33 chrX 87995372 87995886 -88978254 - L2 LINE L2 -493 2821 2266 354 194 0 15 chrX 87997280 87997347 -88976793 + MIR SINE MIR 88 153 -55 661 252 116 76 chrX 87999452 88000056 -88974084 + L1ME4a LINE L1 5460 6087 -34 429 317 95 39 chrX 88000480 88001038 -88973102 - L1ME4a LINE L1 -278 5843 5255 264 256 158 0 chrX 88001970 88002052 -88972088 - MIR3 SINE MIR -42 166 72 195 42 0 0 chrX 88002635 88002659 -88971481 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2292 83 3 0 chrX 88002663 88002953 -88971187 - AluSp SINE Alu -22 291 1 564 288 65 22 chrX 88002981 88003165 -88970975 - MIR3 SINE MIR -14 194 3 239 296 11 11 chrX 88003269 88003357 -88970783 + CT-rich Low_complexity Low_complexity 2 89 0 2726 134 12 0 chrX 88004825 88005244 -88968896 - MSTA LTR MaLR 0 428 5 3854 106 10 5 chrX 88005246 88005832 -88968308 - L1PB2 LINE L1 -6 6145 5557 1686 207 16 45 chrX 88005879 88006255 -88967885 + MLT1A1 LTR MaLR 1 365 0 234 62 0 0 chrX 88006361 88006393 -88967747 + (GGGAGA)n Simple_repeat Simple_repeat 4 35 0 346 347 21 7 chrX 88006942 88007086 -88967054 + L2 LINE L2 3167 3312 -1 231 267 12 23 chrX 88007089 88007175 -88966965 + GA-rich Low_complexity Low_complexity 4 88 0 301 167 0 0 chrX 88007275 88007329 -88966811 + L1ME3A LINE L1 6116 6169 -1 12353 132 20 19 chrX 88007446 88008129 -88966011 - Tigger1 DNA MER2_type 0 2418 1737 1902 163 3 7 chrX 88008129 88008435 -88965705 - AluJb SINE Alu -7 305 1 12353 132 20 19 chrX 88008435 88009767 -88964373 - Tigger1 DNA MER2_type -681 1737 401 181 322 81 0 chrX 88009772 88009859 -88964281 - MIR SINE MIR -92 170 77 1891 164 81 8 chrX 88010202 88010599 -88963541 - MSTB LTR MaLR 0 426 1 227 200 0 0 chrX 88011415 88011465 -88962675 + T-rich Low_complexity Low_complexity 1 50 0 3475 31 7 2 chrX 88011465 88011885 -88962255 - L1PA3 LINE L1 0 6155 5734 8773 25 0 0 chrX 88011985 88013146 -88960994 - L1PA3 LINE L1 -644 5511 4351 * 11178 26 0 0 chrX 88013139 88014502 -88959638 + L1P LINE L1 2070 3432 -2714 318 280 76 17 chrX 88014627 88014745 -88959395 + L2 LINE L2 3148 3272 0 346 336 73 36 chrX 88014894 88015031 -88959109 + L2 LINE L2 3127 3268 -4 204 67 0 0 chrX 88015278 88015308 -88958832 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 186 273 80 57 chrX 88015444 88015532 -88958608 + L3 LINE CR1 920 1009 -568 350 262 29 0 chrX 88015585 88015688 -88958452 - MIR SINE MIR -85 177 72 229 381 8 24 chrX 88016386 88016512 -88957628 + L2 LINE L2 2926 3049 -223 879 236 104 64 chrX 88016546 88016872 -88957268 + MLT1E3 LTR MaLR 3 341 -283 236 192 15 58 chrX 88016868 88016937 -88957203 + MLT1E3 LTR MaLR 431 495 -10 * 201 105 0 53 chrX 88018142 88018180 -88955960 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 187 152 196 0 chrX 88018462 88018508 -88955632 - L2 LINE L2 -1262 2052 1998 393 367 53 50 chrX 88018952 88019608 -88954532 + L2 LINE L2 2275 2932 -382 452 64 81 36 chrX 88022648 88023068 -88951072 + (TA)n Simple_repeat Simple_repeat 1 438 0 325 116 85 0 chrX 88023087 88023251 -88950889 + (TA)n Simple_repeat Simple_repeat 1 178 0 26 50 0 0 chrX 88023252 88023292 -88950848 + AT_rich Low_complexity Low_complexity 1 40 0 270 81 0 0 chrX 88023292 88023329 -88950811 + (CA)n Simple_repeat Simple_repeat 2 38 0 453 76 0 0 chrX 88024006 88024072 -88950068 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 186 209 0 0 chrX 88024096 88024139 -88950001 + CT-rich Low_complexity Low_complexity 3 45 0 933 232 79 70 chrX 88024413 88024728 -88949412 + MLT1E LTR MaLR 1 318 -275 552 309 0 6 chrX 88024726 88024891 -88949249 + MER58B DNA MER1_type 178 341 0 * 236 162 0 81 chrX 88024897 88024971 -88949169 + Zaphod DNA AcHobo 3595 3662 -369 8911 208 19 7 chrX 88024971 88027825 -88946315 - L1PA15 LINE L1 0 6816 3938 5343 242 25 42 chrX 88027827 88030458 -88943682 - L1PA15 LINE L1 -2983 3814 1244 2566 271 56 30 chrX 88030425 88031216 -88942924 - L1PA15 LINE L1 -5936 851 41 * 1274 236 47 0 chrX 88031421 88031619 -88942521 + Zaphod DNA AcHobo 3655 3842 -189 387 0 0 0 chrX 88031619 88031662 -88942478 + (TA)n Simple_repeat Simple_repeat 2 44 0 1274 236 47 0 chrX 88031662 88031823 -88942317 + Zaphod DNA AcHobo 3842 4031 0 2295 187 29 19 chrX 88032747 88033260 -88940880 - L1MC2 LINE L1 -11 6333 5816 13992 201 35 23 chrX 88033319 88033929 -88940211 - L1MA4 LINE L1 -35 6447 5846 477 0 0 0 chrX 88033929 88033982 -88940158 + (TA)n Simple_repeat Simple_repeat 1 53 0 13992 201 35 23 chrX 88033982 88039064 -88935076 - L1MA4 LINE L1 -636 5846 693 2132 118 3 23 chrX 88039064 88039369 -88934771 - AluSq SINE Alu -13 300 2 13992 201 35 23 chrX 88039369 88039527 -88934613 - L1MA4 LINE L1 -5789 693 538 385 122 0 0 chrX 88039527 88039608 -88934532 - MLT2A2 LTR ERVL 0 458 399 500 156 22 17 chrX 88039617 88039796 -88934344 + (TA)n Simple_repeat Simple_repeat 1 180 0 729 138 0 30 chrX 88039810 88040189 -88933951 + (TA)n Simple_repeat Simple_repeat 1 367 0 304 287 35 35 chrX 88040189 88040304 -88933836 + L1MC4 LINE L1 6589 6703 -1339 304 287 35 35 chrX 88040329 88040444 -88933696 + L1MC4 LINE L1 6589 6703 -1339 22 56 0 0 chrX 88040445 88040481 -88933659 + AT_rich Low_complexity Low_complexity 1 36 0 636 108 41 14 chrX 88040486 88040840 -88933300 + (TA)n Simple_repeat Simple_repeat 1 363 0 2643 93 44 13 chrX 88040854 88041241 -88932899 - MLT2A1 LTR ERVL -45 399 1 35473 77 7 4 chrX 88041241 88045804 -88928336 - HERVL-A1-A1 LTR ERVL 0 5654 1079 3039 74 0 0 chrX 88045788 88046178 -88927962 - HERVL-A1-A1 LTR ERVL -5264 390 1 * 2711 100 47 14 chrX 88046178 88046608 -88927532 - MLT2A1 LTR ERVL 0 444 1 1937 176 13 0 chrX 88046608 88046915 -88927225 - L1MA4 LINE L1 -4786 542 232 3978 156 21 24 chrX 88046915 88047628 -88926512 + MER50 LTR ERV1 1 711 -23 6202 139 55 12 chrX 88047671 88049317 -88924823 + MER50-int LTR ERV1 1 1804 -5401 207 0 0 0 chrX 88049317 88049340 -88924800 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6202 139 55 12 chrX 88049340 88049390 -88924750 + MER50-int LTR ERV1 1804 1850 -5355 2932 174 5 4 chrX 88049386 88050095 -88924045 + MER50-int LTR ERV1 1004 3744 -1136 * 2552 129 0 0 chrX 88050095 88050459 -88923681 + THE1B LTR MaLR 1 364 0 6266 101 43 146 chrX 88050459 88051735 -88922405 + THE1B-int LTR MaLR 1 1145 -435 12035 135 23 15 chrX 88051806 88052069 -88922071 + MER50-int LTR ERV1 1502 1762 -5443 191 284 63 21 chrX 88052069 88052164 -88921976 + MIR SINE MIR 23 121 -141 12035 135 23 15 chrX 88052164 88055666 -88918474 + MER50-int LTR ERV1 1762 6205 -1000 1665 208 10 3 chrX 88055668 88055962 -88918178 - AluSx SINE Alu -16 296 1 2594 108 0 8 chrX 88055974 88056335 -88917805 + MER50-int LTR ERV1 6840 7197 -8 3202 158 36 7 chrX 88056335 88056383 -88917757 + MER50 LTR ERV1 1 46 -688 305 24 24 0 chrX 88056383 88056425 -88917715 + (CA)n Simple_repeat Simple_repeat 2 44 0 3202 158 36 7 chrX 88056425 88056951 -88917189 + MER50 LTR ERV1 46 592 -142 890 107 15 0 chrX 88056951 88057082 -88917058 + MER50-int LTR ERV1 5932 6064 -1141 771 134 25 0 chrX 88057090 88057209 -88916931 + MER50 LTR ERV1 598 719 -15 1060 178 13 78 chrX 88057214 88057445 -88916695 - L1M3f LINE L1 -5103 225 10 2459 216 31 14 chrX 88057455 88057669 -88916471 - L1MC2 LINE L1 -519 5825 5616 1974 149 42 25 chrX 88057669 88058024 -88916116 - THE1B LTR MaLR -3 361 1 2459 216 31 14 chrX 88058024 88058792 -88915348 - L1MC2 LINE L1 -728 5616 4829 25 31 0 0 chrX 88059451 88059483 -88914657 + AT_rich Low_complexity Low_complexity 1 32 0 226 115 39 0 chrX 88060315 88060367 -88913773 + (TA)n Simple_repeat Simple_repeat 1 54 0 14836 215 28 30 chrX 88061082 88061419 -88912721 - L1PA15 LINE L1 -6 6810 6474 180 0 0 0 chrX 88061419 88061439 -88912701 + (TTG)n Simple_repeat Simple_repeat 2 21 0 14836 215 28 30 chrX 88061439 88061749 -88912391 - L1PA15 LINE L1 -342 6474 6165 2163 115 3 3 chrX 88061749 88062054 -88912086 - AluSg SINE Alu -5 305 1 14836 215 28 30 chrX 88062054 88064357 -88909783 - L1PA15 LINE L1 -651 6165 3860 1905 140 73 25 chrX 88064357 88064715 -88909425 + THE1C LTR MaLR 1 375 0 14836 215 28 30 chrX 88064715 88067411 -88906729 - L1PA15 LINE L1 -2956 3860 1158 216 0 0 0 chrX 88067898 88067922 -88906218 + (T)n Simple_repeat Simple_repeat 1 24 0 356 301 94 24 chrX 88068409 88068622 -88905518 + MIR SINE MIR 29 256 -6 188 318 32 0 chrX 88069563 88069626 -88904514 - MIR SINE MIR -121 141 77 1194 288 62 22 chrX 88069869 88070317 -88903823 + MLT1J LTR MaLR 4 469 -42 285 333 17 8 chrX 88070703 88070820 -88903320 + MER117 DNA MER1_type 1 118 -79 26 64 0 0 chrX 88071525 88071572 -88902568 + AT_rich Low_complexity Low_complexity 1 47 0 348 281 89 7 chrX 88071575 88071710 -88902430 + L1ME4a LINE L1 5959 6104 -17 470 129 0 0 chrX 88071871 88071941 -88902199 - THE1C LTR MaLR -2 373 304 25882 141 14 14 chrX 88071941 88078315 -88895825 + L1PA8A LINE L1 3 6471 -9 504 132 0 0 chrX 88078315 88078391 -88895749 - THE1C LTR MaLR -57 318 243 569 209 108 48 chrX 88078787 88079059 -88895081 - MER39 LTR ERV1 -195 481 9 2299 73 0 32 chrX 88079678 88079993 -88894147 - AluY SINE Alu -6 305 1 1110 277 89 41 chrX 88130108 88130570 -88843570 + MLT1H LTR MaLR 50 533 -16 240 35 0 0 chrX 88130709 88130738 -88843402 + (TG)n Simple_repeat Simple_repeat 2 30 0 2356 42 0 3 chrX 88132221 88132537 -88841603 - AluY SINE Alu 0 315 1 1083 88 0 22 chrX 88133310 88133492 -88840648 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 249 33 0 0 chrX 88133496 88133526 -88840614 + (TTCC)n Simple_repeat Simple_repeat 2 31 0 1162 113 6 0 chrX 88133528 88133688 -88840452 - FRAM SINE Alu -23 153 1 599 189 0 27 chrX 88133779 88133890 -88840250 - FLAM_C SINE Alu -32 111 4 282 335 20 33 chrX 88134076 88134228 -88839912 + MIR SINE MIR 57 206 -56 237 243 47 75 chrX 88135836 88135943 -88838197 - MIR SINE MIR -47 215 112 445 198 16 0 chrX 88136754 88136880 -88837260 + (TAG)n Simple_repeat Simple_repeat 3 130 0 523 267 60 69 chrX 88136902 88136955 -88837185 - MIR SINE MIR -3 259 207 1389 12 0 0 chrX 88136955 88137115 -88837025 - L1PA2 LINE L1 0 6155 5996 523 267 60 69 chrX 88137115 88137293 -88836847 - MIR SINE MIR -55 207 30 198 103 0 0 chrX 88141583 88141612 -88832528 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 8405 246 52 29 chrX 88142699 88143321 -88830819 + L1MD2 LINE L1 2408 3014 -3345 1775 173 10 19 chrX 88143321 88143634 -88830506 + AluJb SINE Alu 2 311 -1 8405 246 52 29 chrX 88143634 88146861 -88827279 + L1MD2 LINE L1 3014 6356 -3 366 194 19 9 chrX 88147054 88147162 -88826978 + GA-rich Low_complexity Low_complexity 5 113 0 21 36 0 0 chrX 88147618 88147646 -88826494 + AT_rich Low_complexity Low_complexity 1 28 0 3121 175 87 49 chrX 88147943 88148699 -88825441 + LTR1 LTR ERV1 1 785 0 266 217 0 0 chrX 88148916 88148976 -88825164 - L1ME3A LINE L1 -5 6165 6106 1692 268 60 13 chrX 88149005 88149543 -88824597 - L1ME1 LINE L1 -6 6143 5581 911 300 87 39 chrX 88149841 88150587 -88823553 - L1ME1 LINE L1 -1820 4309 3528 436 246 91 27 chrX 88150658 88150955 -88823185 - L1ME1 LINE L1 -2734 3395 3080 247 294 96 7 chrX 88150964 88151100 -88823040 - L1M2 LINE L1 -4319 2530 2383 529 303 75 44 chrX 88151326 88151739 -88822401 - L1ME1 LINE L1 -5233 886 461 24 32 0 0 chrX 88152017 88152048 -88822092 + AT_rich Low_complexity Low_complexity 1 31 0 4286 126 5 1 chrX 88152097 88152757 -88821383 + L1MA4A LINE L1 5630 6291 -12 360 223 43 32 chrX 88152820 88152914 -88821226 - L1MD2 LINE L1 -69 6290 6196 1055 209 117 15 chrX 88152929 88153202 -88820938 - MER2 DNA MER2_type -1 344 44 1566 151 195 19 chrX 88153676 88154040 -88820100 - MSTA LTR MaLR 0 428 1 214 348 149 62 chrX 88154479 88154867 -88819273 + L2 LINE L2 2851 3272 0 23 0 0 0 chrX 88155056 88155079 -88819061 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 88155224 88155246 -88818894 + AT_rich Low_complexity Low_complexity 1 22 0 321 89 0 0 chrX 88155745 88155790 -88818350 + (CA)n Simple_repeat Simple_repeat 2 46 0 703 325 24 8 chrX 88157682 88157928 -88816212 - MIR SINE MIR -1 261 12 2474 119 6 0 chrX 88158453 88158813 -88815327 - THE1B LTR MaLR -2 362 1 9707 135 35 3 chrX 88158813 88160345 -88813795 - THE1B-int LTR MaLR 0 1580 1 2521 95 11 6 chrX 88160349 88160708 -88813432 - THE1B LTR MaLR -3 361 1 373 291 78 28 chrX 88160906 88161085 -88813055 + L2 LINE L2 3015 3202 -111 666 118 0 0 chrX 88161102 88161204 -88812936 + (TA)n Simple_repeat Simple_repeat 2 103 0 2237 78 0 20 chrX 88161261 88161556 -88812584 + AluY SINE Alu 1 289 -22 704 259 190 20 chrX 88161720 88162056 -88812084 - L1ME2 LINE L1 -3 6097 5705 1380 234 77 14 chrX 88162059 88162473 -88811667 - L1ME2 LINE L1 -426 5672 5233 1490 208 93 44 chrX 88162473 88162925 -88811215 + MLT1D LTR MaLR 1 474 -31 2334 71 3 3 chrX 88162925 88163221 -88810919 - AluY SINE Alu -15 296 1 756 223 78 72 chrX 88163258 88163540 -88810600 - L1ME2 LINE L1 -847 5233 4947 659 127 0 0 chrX 88163540 88163650 -88810490 - L1PA13 LINE L1 -3 6160 6051 756 223 78 72 chrX 88163650 88163699 -88810441 - L1ME2 LINE L1 -1133 4947 4900 1099 184 73 21 chrX 88163699 88163932 -88810208 - MER58 DNA MER1_type -95 246 2 1194 295 73 32 chrX 88163949 88165200 -88808940 - L1ME2 LINE L1 -4377 1703 142 2390 119 8 22 chrX 88166195 88166564 -88807576 + THE1B LTR MaLR 1 364 0 2406 110 302 0 chrX 88166564 88167008 -88807132 + THE1B-int LTR MaLR 1 578 -1002 * 6360 107 1 0 chrX 88167005 88167871 -88806269 + THE1B-int LTR MaLR 710 1576 -4 409 41 0 0 chrX 88167875 88167924 -88806216 + THE1B LTR MaLR 1 49 -315 * 1298 138 48 24 chrX 88167923 88168133 -88806007 + THE1B LTR MaLR 150 364 0 355 314 20 0 chrX 88168422 88168524 -88805616 - L2 LINE L2 -5 3308 3205 290 277 28 124 chrX 88168653 88168830 -88805310 - MER5A DNA MER1_type 0 189 30 * 341 231 24 142 chrX 88168676 88168845 -88805295 + MER5A DNA MER1_type 35 183 -6 1926 148 0 23 chrX 88168911 88169215 -88804925 - AluJb SINE Alu -15 297 1 352 323 100 54 chrX 88169313 88169644 -88804496 + L1MCb LINE L1 58 403 -5642 314 269 46 39 chrX 88169879 88170009 -88804131 + L1MCb LINE L1 443 573 -5473 1202 146 31 1 chrX 88170071 88170348 -88803792 + MER2 DNA MER2_type 23 345 0 1548 240 74 6 chrX 88170349 88170925 -88803215 + L1MCb LINE L1 679 1293 -4889 1176 190 112 34 chrX 88170948 88171216 -88802924 + MLT1D LTR MaLR 114 402 -103 1499 204 90 57 chrX 88171403 88171892 -88802248 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chrX 88172089 88172118 -88802022 + AT_rich Low_complexity Low_complexity 1 29 0 368 297 80 14 chrX 88173184 88173322 -88800818 + MER20B DNA MER1_type 1 147 -636 2271 122 30 22 chrX 88173373 88173734 -88800406 - THE1B LTR MaLR 0 364 1 1814 181 14 24 chrX 88174118 88174488 -88799652 + MER47A DNA MER2_type 1 366 0 365 270 35 63 chrX 88175010 88175184 -88798956 - MIR SINE MIR -5 257 89 217 326 0 21 chrX 88177161 88177256 -88796884 + L3b LINE CR1 1177 1269 -314 471 298 159 5 chrX 88177637 88177845 -88796295 + MIR SINE MIR 2 241 -21 207 0 0 0 chrX 88178105 88178128 -88796012 + (TG)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chrX 88178134 88178155 -88795985 + (CA)n Simple_repeat Simple_repeat 2 22 0 2254 128 34 11 chrX 88178207 88178560 -88795580 + THE1B LTR MaLR 3 363 -1 722 171 23 11 chrX 88178894 88179070 -88795070 + GA-rich Low_complexity Low_complexity 3 180 0 2289 83 6 13 chrX 88181384 88181696 -88792444 - AluSq SINE Alu -3 310 1 25 31 0 0 chrX 88182320 88182352 -88791788 + AT_rich Low_complexity Low_complexity 1 32 0 396 86 0 0 chrX 88182358 88182416 -88791724 - Alu SINE Alu -1 299 242 12600 152 58 11 chrX 88182807 88185116 -88789024 + Tigger1 DNA MER2_type 1 2418 0 2217 249 42 17 chrX 88185148 88185918 -88788222 + L1M4 LINE L1 2235 3023 -3123 746 269 84 24 chrX 88185955 88186290 -88787850 + L1ME1 LINE L1 5794 6148 -18 1048 228 55 14 chrX 88186977 88187324 -88786816 - LTR37B LTR ERV1 -6 462 102 255 316 95 32 chrX 88188907 88189065 -88785075 - MIR SINE MIR -28 234 67 315 0 0 0 chrX 88189467 88189502 -88784638 + (CA)n Simple_repeat Simple_repeat 2 36 0 228 330 44 0 chrX 88189905 88189996 -88784144 - MIR3 SINE MIR -24 184 90 267 281 0 0 chrX 88190450 88190514 -88783626 + L2 LINE L2 3250 3313 0 21 36 0 0 chrX 88191138 88191166 -88782974 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chrX 88191612 88191640 -88782500 + (TG)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chrX 88192271 88192293 -88781847 + AT_rich Low_complexity Low_complexity 1 22 0 1145 126 20 118 chrX 88192731 88192985 -88781155 - L1MA9 LINE L1 -84 6228 6000 813 236 101 19 chrX 88193073 88193331 -88780809 - L1ME3 LINE L1 -9 6153 5875 4486 186 76 9 chrX 88193340 88195182 -88778958 - L1MB1 LINE L1 0 6168 4195 2837 139 41 40 chrX 88195195 88195726 -88778414 + Tigger1 DNA MER2_type 1322 1853 -565 2366 84 0 0 chrX 88195729 88196027 -88778113 + AluSg SINE Alu 2 299 -11 657 148 0 0 chrX 88196027 88196128 -88778012 - L1MA4 LINE L1 -533 5767 5667 2772 143 29 4 chrX 88196128 88196613 -88777527 + L1MA4 LINE L1 5799 6300 0 3648 155 7 2 chrX 88196625 88197219 -88776921 + Tigger1 DNA MER2_type 1822 2418 0 1692 167 27 10 chrX 88197267 88197567 -88776573 - AluSx SINE Alu -7 305 1 22 0 0 0 chrX 88198825 88198847 -88775293 + AT_rich Low_complexity Low_complexity 1 22 0 816 323 90 29 chrX 88199583 88200004 -88774136 - MLT1K LTR MaLR -6 582 136 350 295 115 6 chrX 88200105 88200261 -88773879 + MIR SINE MIR 83 255 -7 340 239 84 42 chrX 88201282 88201495 -88772645 + L1M4 LINE L1 2131 2352 -3794 1566 231 98 91 chrX 88201551 88202313 -88771827 + L1MC4 LINE L1 7042 7809 -233 24 32 0 0 chrX 88202518 88202549 -88771591 + AT_rich Low_complexity Low_complexity 1 31 0 202 128 0 26 chrX 88202862 88202901 -88771239 + (TCTCTG)n Simple_repeat Simple_repeat 6 43 0 2488 57 0 10 chrX 88204015 88204329 -88769811 + AluY SINE Alu 1 311 0 336 300 16 21 chrX 88204398 88204588 -88769552 + L1M4 LINE L1 3846 4034 -2112 305 390 0 0 chrX 88204718 88204859 -88769281 + L1M4 LINE L1 2969 3109 -3037 606 203 65 124 chrX 88204861 88205078 -88769062 + MIR SINE MIR 1 204 -58 727 313 49 40 chrX 88205124 88205876 -88768264 + L1M4 LINE L1 3115 3873 -2273 254 315 256 30 chrX 88206355 88206558 -88767582 + MIR SINE MIR 3 251 -11 564 298 50 28 chrX 88207810 88208028 -88766112 - MIR SINE MIR -28 234 12 21 36 0 0 chrX 88208604 88208632 -88765508 + AT_rich Low_complexity Low_complexity 1 28 0 6216 161 21 2 chrX 88208632 88210757 -88763383 - L1PB2 LINE L1 -1 6150 3995 * 10671 233 29 17 chrX 88210740 88215776 -88758364 - L1MC1 LINE L1 -7 6395 1334 1847 159 130 16 chrX 88215776 88216160 -88757980 - MSTA LTR MaLR 0 428 1 7827 137 11 30 chrX 88216161 88217468 -88756672 - MSTA-int LTR MaLR -16 1564 282 5371 242 34 19 chrX 88217449 88217585 -88756555 - L1 LINE L1 -1814 4332 4200 * 2924 133 2 0 chrX 88217585 88218012 -88756128 - MSTA LTR MaLR 0 428 1 5371 242 34 19 chrX 88218012 88219595 -88754545 - L1 LINE L1 -1946 4200 2587 30 45 0 0 chrX 88220530 88220574 -88753566 + AT_rich Low_complexity Low_complexity 1 44 0 2693 74 11 3 chrX 88220996 88221348 -88752792 + THE1A LTR MaLR 1 355 0 10918 106 24 1 chrX 88221348 88222869 -88751271 + THE1A-int LTR MaLR 1 1557 -23 786 182 25 13 chrX 88222947 88223106 -88751034 - MLT1A2 LTR MaLR -213 161 1 1655 179 31 31 chrX 88223319 88223672 -88750468 + MLT1A1 LTR MaLR 13 365 0 1052 298 14 11 chrX 88223821 88224100 -88750040 + ERVL LTR ERVL 4510 4789 -975 4595 128 16 13 chrX 88224169 88224375 -88749765 - Tigger1 DNA MER2_type -127 2291 2087 2773 20 0 0 chrX 88224375 88224680 -88749460 - AluYa5 SINE Alu -6 305 1 4595 128 16 13 chrX 88224680 88225220 -88748920 - Tigger1 DNA MER2_type -331 2087 1543 2360 81 7 0 chrX 88225276 88225572 -88748568 - AluSc SINE Alu -11 298 1 280 258 0 0 chrX 88225572 88225638 -88748502 + Ricksha DNA DNA 275 340 -2906 1353 320 53 29 chrX 88225646 88226292 -88747848 + MLT2F LTR ERVL 3 663 0 340 273 173 20 chrX 88226921 88227071 -88747069 + L2 LINE L2 3097 3269 -3 219 69 0 0 chrX 88229648 88229677 -88744463 + (CA)n Simple_repeat Simple_repeat 2 30 0 290 85 0 21 chrX 88230174 88230221 -88743919 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 245 212 76 15 chrX 88230476 88230542 -88743598 + MIR3 SINE MIR 10 79 -129 357 367 75 50 chrX 88230692 88231396 -88742744 - L2 LINE L2 -3 3269 2545 294 194 0 0 chrX 88231407 88231474 -88742666 + GA-rich Low_complexity Low_complexity 2 68 0 977 368 92 36 chrX 88231474 88232919 -88741221 - L2 LINE L2 -775 2539 1014 310 228 65 0 chrX 88233262 88233354 -88740786 - L1MC4 LINE L1 -1331 6711 6614 213 39 0 0 chrX 88233676 88233702 -88740438 + (TA)n Simple_repeat Simple_repeat 2 27 0 4632 163 41 69 chrX 88233821 88235373 -88738767 + L1MA10 LINE L1 4673 6324 -10 23 0 0 0 chrX 88235389 88235412 -88738728 + AT_rich Low_complexity Low_complexity 1 23 0 203 242 65 16 chrX 88235412 88235474 -88738666 - MIR SINE MIR -151 111 47 197 132 26 0 chrX 88236160 88236198 -88737942 + (TA)n Simple_repeat Simple_repeat 2 40 0 532 220 0 0 chrX 88237416 88237525 -88736615 - MER3 DNA MER1_type 0 209 101 356 345 48 67 chrX 88237954 88238328 -88735812 - L2 LINE L2 -29 3284 2918 302 304 87 29 chrX 88239916 88240054 -88734086 - MIR SINE MIR -114 148 3 356 203 13 0 chrX 88240810 88240889 -88733251 - MER116 DNA Mariner 0 80 1 735 259 127 0 chrX 88241254 88241443 -88732697 - MER58C DNA MER1_type -2 213 1 340 293 79 7 chrX 88241563 88241703 -88732437 + MIR3 SINE MIR 54 203 -5 322 358 51 7 chrX 88242442 88242590 -88731550 - MIR3 SINE MIR -48 160 4 308 151 0 0 chrX 88242790 88242843 -88731297 - L1PB1 LINE L1 -662 5489 5437 4612 79 21 3 chrX 88242843 88243470 -88730670 + L1PB1 LINE L1 5505 6147 -4 212 330 85 11 chrX 88243733 88243827 -88730313 + L2 LINE L2 3196 3296 -17 22 0 0 0 chrX 88245961 88245983 -88728157 + AT_rich Low_complexity Low_complexity 1 22 0 3597 49 4 0 chrX 88245993 88246443 -88727697 - L1PA6 LINE L1 -2 6152 5701 2331 102 68 23 chrX 88246625 88247045 -88727095 + LTR25 LTR ERV1 408 794 0 1729 117 4 0 chrX 88249301 88249550 -88724590 + AluSg SINE Alu 56 305 -5 425 333 21 21 chrX 88250369 88250555 -88723585 - MER5A DNA MER1_type -2 187 2 248 327 12 130 chrX 88251488 88251742 -88722398 - L2 LINE L2 -15 3257 3034 405 0 0 0 chrX 88252074 88252119 -88722021 + (TG)n Simple_repeat Simple_repeat 2 46 0 244 312 65 11 chrX 88253183 88253276 -88720864 + MIR SINE MIR 44 141 -67 18359 182 27 15 chrX 88253472 88260217 -88713923 + L1PA13 LINE L1 1 7600 -1 23 54 0 0 chrX 88260219 88260256 -88713884 + AT_rich Low_complexity Low_complexity 1 37 0 373 292 91 13 chrX 88260565 88260719 -88713421 + L1ME LINE L1 5266 5431 -690 9404 168 63 34 chrX 88260895 88263892 -88710248 - L1PBa LINE L1 -2052 4810 1685 2127 117 0 0 chrX 88263892 88264175 -88709965 + AluY SINE Alu 7 289 -22 9404 168 63 34 chrX 88264175 88264765 -88709375 - L1PBa LINE L1 -5177 1685 1113 861 220 20 0 chrX 88264756 88264956 -88709184 - L1PBa LINE L1 -6659 204 1 * 739 249 18 0 chrX 88265084 88265249 -88708891 - HERVL40 LTR ERVL 0 5530 5363 558 179 57 29 chrX 88265299 88265544 -88708596 - MLT1B LTR MaLR 0 374 22 180 77 0 0 chrX 88265596 88265622 -88708518 + (T)n Simple_repeat Simple_repeat 1 26 0 574 162 0 9 chrX 88265636 88265747 -88708393 + L1PA15 LINE L1 6044 6153 -12 2062 125 0 13 chrX 88265748 88266059 -88708081 + AluY SINE Alu 1 307 -4 675 137 60 71 chrX 88266062 88266245 -88707895 - L1MA8 LINE L1 -22 6269 6089 273 316 20 53 chrX 88266264 88266416 -88707724 - HERVL40 LTR ERVL -353 4670 4524 563 263 36 103 chrX 88266507 88266865 -88707275 - HERVL40 LTR ERVL -327 2710 2377 327 274 0 21 chrX 88267118 88267213 -88706927 - HERVL40 LTR ERVL -909 2128 2036 5934 266 31 12 chrX 88267213 88268778 -88705362 - HERVL40 LTR ERVL -1237 4293 2699 5312 101 21 5 chrX 88268782 88269547 -88704593 + L1PA10 LINE L1 5382 6158 -10 585 226 15 15 chrX 88269556 88269689 -88704451 - HERVL40 LTR ERVL -2876 2654 2522 * 1675 306 70 20 chrX 88269688 88270041 -88704099 - HERVL40 LTR ERVL -3919 1611 1277 2625 70 8 17 chrX 88270041 88270399 -88703741 - THE1A LTR MaLR 0 355 1 1675 306 70 20 chrX 88270399 88270704 -88703436 - HERVL40 LTR ERVL -4253 1277 920 362 307 51 6 chrX 88270816 88270992 -88703148 - HERVL40 LTR ERVL -5344 186 3 1847 253 35 16 chrX 88270996 88271505 -88702635 - LTR40a LTR ERVL 0 519 1 242 279 0 0 chrX 88272035 88272121 -88702019 + L1MC4 LINE L1 6618 6703 -1339 336 133 0 0 chrX 88272125 88272185 -88701955 + (TA)n Simple_repeat Simple_repeat 2 61 0 504 337 176 0 chrX 88272349 88272628 -88701512 - L2 LINE L2 0 3313 2986 383 376 44 25 chrX 88273375 88273694 -88700446 + LTR16C LTR ERVL 159 483 -8 300 252 58 45 chrX 88273694 88273849 -88700291 - L1M4 LINE L1 -964 5182 5026 1224 229 6 6 chrX 88273993 88274325 -88699815 + MLT1A1 LTR MaLR 1 365 0 434 242 48 32 chrX 88274462 88274648 -88699492 - L1MC5 LINE L1 -450 7511 7323 411 319 30 12 chrX 88274654 88274823 -88699317 - L1MC4 LINE L1 -557 7485 7314 3559 75 4 6 chrX 88275127 88275605 -88698535 + L1PA6 LINE L1 5667 6143 -11 186 133 0 0 chrX 88275628 88275658 -88698482 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 1555 189 0 11 chrX 88275684 88275970 -88698170 + AluJb SINE Alu 1 283 -29 1973 74 3 81 chrX 88276296 88276605 -88697535 + AluY SINE Alu 27 311 0 4580 161 9 26 chrX 88276621 88278512 -88695628 + L1PA16 LINE L1 4446 6285 -6 1428 304 45 27 chrX 88278687 88279270 -88694870 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chrX 88279357 88279384 -88694756 + AT_rich Low_complexity Low_complexity 1 27 0 592 271 100 9 chrX 88279385 88279735 -88694405 - L1ME4a LINE L1 -28 6093 5712 1656 157 39 11 chrX 88279946 88280232 -88693908 + AluJo SINE Alu 16 309 -3 25 0 0 0 chrX 88280628 88280653 -88693487 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chrX 88280840 88280870 -88693270 + AT_rich Low_complexity Low_complexity 1 30 0 223 235 153 10 chrX 88281514 88281612 -88692528 + L2 LINE L2 3128 3239 -74 252 324 0 0 chrX 88281612 88281686 -88692454 + CT-rich Low_complexity Low_complexity 2 75 0 269 132 94 19 chrX 88281697 88281750 -88692390 + L2 LINE L2 3216 3272 0 183 129 0 0 chrX 88282738 88282769 -88691371 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 24 0 0 0 chrX 88283034 88283058 -88691082 + AT_rich Low_complexity Low_complexity 1 24 0 279 319 59 0 chrX 88284143 88284262 -88689878 - MIR SINE MIR -90 172 47 1965 127 0 22 chrX 88284980 88285296 -88688844 + AluSq SINE Alu 1 309 -4 185 311 50 81 chrX 88285730 88285891 -88688249 - MER5A DNA MER1_type 0 189 34 253 264 27 108 chrX 88287191 88287339 -88686801 + L3 LINE CR1 547 682 -895 665 257 16 11 chrX 88287471 88287658 -88686482 + L1M4 LINE L1 14 201 -6341 968 83 145 0 chrX 88287665 88287810 -88686330 - L1PA7 LINE L1 -13 6141 5976 2418 264 98 24 chrX 88287816 88289373 -88684767 + L1M4 LINE L1 1476 3146 -3498 479 268 64 13 chrX 88289385 88289542 -88684598 - L1M4c LINE L1 -4047 2337 2173 2393 241 60 10 chrX 88289546 88290373 -88683767 + L1M4 LINE L1 3167 4035 -2609 12444 228 31 17 chrX 88290480 88292228 -88681912 - L1 LINE L1 -2624 4224 2503 207 0 0 0 chrX 88292228 88292251 -88681889 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12444 228 31 17 chrX 88292251 88292825 -88681315 - L1 LINE L1 -4345 2503 1939 225 0 0 0 chrX 88292825 88292850 -88681290 + (TG)n Simple_repeat Simple_repeat 2 26 0 12444 228 31 17 chrX 88292850 88294680 -88679460 - L1 LINE L1 -4909 1939 10 1274 305 56 23 chrX 88294830 88295720 -88678420 - L1ME3A LINE L1 -224 5946 5087 2138 106 3 13 chrX 88295720 88296031 -88678109 - AluSq SINE Alu -5 308 1 600 297 0 21 chrX 88296035 88296227 -88677913 + MER5A DNA MER1_type 1 188 -1 1274 305 56 23 chrX 88296227 88296250 -88677890 - L1ME3A LINE L1 -1085 5085 5064 2178 113 3 3 chrX 88296250 88296550 -88677590 - AluSq SINE Alu -13 300 1 1274 305 56 23 chrX 88296550 88296654 -88677486 - L1ME3A LINE L1 -1106 5064 4885 397 212 35 9 chrX 88296756 88296869 -88677271 - L1ME3A LINE L1 -3152 2994 2879 7586 223 26 10 chrX 88297015 88298922 -88675218 + L1 LINE L1 3290 5227 -919 327 191 36 0 chrX 88298972 88299056 -88675084 - L1MA10 LINE L1 -7 6327 6241 458 197 74 39 chrX 88299072 88299229 -88674911 + L1M4c LINE L1 2237 2404 -3980 2750 91 3 0 chrX 88299229 88299590 -88674550 + THE1B LTR MaLR 1 362 -2 458 197 74 39 chrX 88299590 88299635 -88674505 + L1M4c LINE L1 2404 2446 -3938 2016 131 0 0 chrX 88299647 88299929 -88674211 + AluSx SINE Alu 1 282 -30 189 0 0 0 chrX 88299936 88299957 -88674183 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 923 200 4 92 chrX 88299992 88300139 -88674001 + MLT2B1 LTR ERVL 302 422 -98 183 42 0 0 chrX 88300139 88300163 -88673977 + (TG)n Simple_repeat Simple_repeat 1 24 0 923 200 4 92 chrX 88300163 88300255 -88673885 + MLT2B1 LTR ERVL 422 520 0 3335 231 48 15 chrX 88300256 88301004 -88673136 + ERVL-B1-B1 LTR ERVL 2 774 -4990 1548 184 8 4 chrX 88300987 88301242 -88672898 + ERVL-B1-B1 LTR ERVL 686 941 -4823 * 22919 183 26 16 chrX 88301209 88305403 -88668737 + ERVL-B1-B1 LTR ERVL 1522 5757 -7 2388 196 67 18 chrX 88305403 88305899 -88668241 + MLT2B1 LTR ERVL 1 520 0 315 85 0 0 chrX 88305956 88306003 -88668137 + (CA)n Simple_repeat Simple_repeat 1 47 0 188 348 120 0 chrX 88306215 88306307 -88667833 - L2 LINE L2 -8 3264 3162 221 303 45 15 chrX 88306761 88306827 -88667313 - L3b LINE CR1 -2 1581 1514 258 369 30 42 chrX 88306834 88307002 -88667138 + MER5A DNA MER1_type 24 189 0 200 154 49 57 chrX 88307061 88307184 -88666956 + (TTTAA)n Simple_repeat Simple_repeat 1 122 0 335 289 57 22 chrX 88307940 88308282 -88665858 + L1M4b LINE L1 1371 1848 -5099 240 376 15 38 chrX 88309206 88309339 -88664801 + MIR SINE MIR 14 143 -119 197 206 0 16 chrX 88311006 88311069 -88663071 + (TA)n Simple_repeat Simple_repeat 2 63 0 599 284 104 0 chrX 88311071 88311254 -88662886 - MIR SINE MIR -13 249 48 210 255 64 0 chrX 88311472 88311519 -88662621 + MIR SINE MIR 70 119 -89 1099 280 103 23 chrX 88311596 88312024 -88662116 + MLT1H LTR MaLR 61 522 -27 437 291 70 0 chrX 88312852 88312967 -88661173 + MIR SINE MIR 81 211 -51 288 77 0 0 chrX 88312967 88313006 -88661134 + (CA)n Simple_repeat Simple_repeat 1 39 0 437 291 70 0 chrX 88313006 88313048 -88661092 + MIR SINE MIR 211 249 -13 557 345 57 4 chrX 88314587 88314816 -88659324 - MIR SINE MIR 0 262 22 1436 232 62 57 chrX 88315151 88315569 -88658571 - MLT2B1 LTR ERVL -10 510 91 500 309 117 16 chrX 88315783 88315971 -88658169 - L3 LINE CR1 -10 1567 1361 181 304 0 18 chrX 88316078 88316134 -88658006 - MIR SINE MIR -138 70 16 3471 192 111 24 chrX 88316158 88316951 -88657189 - MER21B LTR ERV1 -1 862 1 314 277 155 79 chrX 88316977 88317280 -88656860 - L3 LINE CR1 -296 1281 956 276 363 49 29 chrX 88318871 88319221 -88654919 + L1MEd LINE L1 264 620 -5499 3400 74 0 0 chrX 88319511 88319959 -88654181 - THE1B-int LTR MaLR -1132 448 1 2127 138 39 33 chrX 88319959 88320321 -88653819 - THE1B LTR MaLR 0 364 1 6100 131 25 6 chrX 88320321 88321319 -88652821 - THE1B-int LTR MaLR 0 1580 564 730 249 18 0 chrX 88321626 88321791 -88652349 - HERVL40-B1 LTR ERVL 0 5530 5363 555 184 57 29 chrX 88321841 88322086 -88652054 - MLT1B LTR MaLR 0 374 22 180 77 0 0 chrX 88322138 88322164 -88651976 + (T)n Simple_repeat Simple_repeat 1 26 0 575 162 0 9 chrX 88322178 88322289 -88651851 + L1PA15 LINE L1 6044 6153 -12 2273 66 3 75 chrX 88322290 88322623 -88651517 + AluY SINE Alu 1 309 -2 2748 185 11 0 chrX 88322638 88323190 -88650950 + L1MB1 LINE L1 4446 5003 -1143 2634 276 87 53 chrX 88323307 88324485 -88649655 + MLT-int LTR MaLR 327 1185 -186 3435 168 41 26 chrX 88324676 88325648 -88648492 + L1MB1 LINE L1 5046 6031 -137 2830 241 50 34 chrX 88325923 88326837 -88647303 - L1PA13 LINE L1 -4923 1864 423 7093 120 10 8 chrX 88327180 88328311 -88645829 - HERVH LTR ERV1 -5973 1740 608 7073 206 50 9 chrX 88328598 88330067 -88644073 - L1M1 LINE L1 -5936 1629 101 380 375 44 25 chrX 88330362 88330679 -88643461 + LTR16C LTR ERVL 159 481 -10 359 200 94 2 chrX 88330981 88331215 -88642925 + MLT1A2 LTR MaLR 1 302 -72 22 35 0 0 chrX 88331688 88331717 -88642423 + AT_rich Low_complexity Low_complexity 1 29 0 261 352 57 34 chrX 88332213 88332562 -88641578 + L1MEd LINE L1 264 620 -5499 654 225 39 11 chrX 88332824 88333002 -88641138 + L1MA9 LINE L1 6070 6252 -60 1776 168 9 6 chrX 88333003 88333318 -88640822 + L1PA16 LINE L1 5848 6163 -3 339 358 61 19 chrX 88333353 88333815 -88640325 + L1 LINE L1 3263 3744 -2402 3771 234 19 23 chrX 88334022 88335185 -88638955 - L1 LINE L1 -1693 4453 3296 1306 285 74 30 chrX 88335959 88336758 -88637382 + L1MEd LINE L1 741 1574 -4555 3269 200 37 22 chrX 88338252 88339146 -88634994 + L1 LINE L1 4328 5234 -912 1765 235 49 40 chrX 88339529 88340187 -88633953 + L1PB4 LINE L1 1378 2028 -4691 2243 152 72 5 chrX 88340187 88340588 -88633552 + MSTA LTR MaLR 1 428 0 8667 181 26 4 chrX 88340588 88342204 -88631936 + MSTA-int LTR MaLR 1 1651 0 2013 159 117 3 chrX 88342204 88342588 -88631552 + MSTA LTR MaLR 1 428 0 1765 235 49 40 chrX 88342588 88342668 -88631472 + L1PB4 LINE L1 2027 2124 -4595 1738 168 136 34 chrX 88342671 88343053 -88631087 - MSTA LTR MaLR -7 421 1 1244 286 60 26 chrX 88343056 88343751 -88630389 + L1M1 LINE L1 2558 3276 -4289 860 229 35 41 chrX 88343768 88344083 -88630057 + L1M1 LINE L1 3344 3656 -3909 7140 199 69 11 chrX 88344083 88345539 -88628601 - ERVL LTR ERVL -875 4889 3350 4617 145 17 20 chrX 88345547 88346381 -88627759 - L1PA16 LINE L1 0 6166 5334 * 7050 226 38 23 chrX 88346367 88346522 -88627618 + L1PB4 LINE L1 2327 2478 -4310 180 0 0 0 chrX 88346522 88346542 -88627598 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 7050 226 38 23 chrX 88346542 88346933 -88627207 + L1PB4 LINE L1 2478 2861 -3927 2178 107 7 13 chrX 88346933 88347231 -88626909 + AluY SINE Alu 1 296 -15 7050 226 38 23 chrX 88347231 88347281 -88626859 + L1PB4 LINE L1 2861 2909 -3879 1281 243 10 33 chrX 88347281 88347582 -88626558 + AluJo SINE Alu 1 294 -8 7050 226 38 23 chrX 88347582 88349351 -88624789 + L1PB4 LINE L1 2909 4680 -2108 2568 172 37 14 chrX 88349364 88350026 -88624114 + L1PB4 LINE L1 5771 6446 -352 301 262 0 19 chrX 88350097 88350200 -88623940 + L1MC1 LINE L1 4755 4855 -1291 1256 244 20 17 chrX 88350200 88350545 -88623595 + L1PB4 LINE L1 6450 6795 -3 477 279 25 20 chrX 88350546 88350750 -88623390 + L1MD1 LINE L1 3386 3590 -2556 960 294 18 21 chrX 88350751 88351077 -88623063 - LTR53 LTR ERVL 0 519 195 3824 238 67 25 chrX 88351265 88353799 -88620341 + L1MD1 LINE L1 3587 6242 0 458 176 0 0 chrX 88355288 88355373 -88618767 - L1MC1 LINE L1 -866 5778 5694 4789 189 62 20 chrX 88355382 88355491 -88618649 + L1MC1 LINE L1 5768 5871 -969 1363 206 21 63 chrX 88355491 88355870 -88618270 - MLT1A1 LTR MaLR 0 365 3 4789 189 62 20 chrX 88355870 88356281 -88617859 + L1MC1 LINE L1 5871 6263 -577 4191 105 46 0 chrX 88356281 88356888 -88617252 + MER41B LTR ERV1 1 635 0 4789 189 62 20 chrX 88356888 88357386 -88616754 + L1MC1 LINE L1 6263 6834 -6 195 69 0 0 chrX 88357385 88357414 -88616726 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 * 2726 193 9 6 chrX 88357511 88358039 -88616101 + L1PB4 LINE L1 5615 6144 -12 551 208 26 0 chrX 88358154 88358268 -88615872 - FLAM_A SINE Alu -21 121 10 563 257 94 21 chrX 88358323 88358611 -88615529 - L1M4 LINE L1 -1340 5304 4996 * 4471 229 108 41 chrX 88358610 88360435 -88613705 - L1M4 LINE L1 -3898 2748 802 330 321 46 32 chrX 88360715 88360933 -88613207 - L1M4 LINE L1 -6318 224 4 330 342 115 58 chrX 88363360 88363616 -88610524 + MLT1K LTR MaLR 8 248 -340 2056 108 0 33 chrX 88363616 88363923 -88610217 - AluSx SINE Alu -15 297 1 330 342 115 58 chrX 88363923 88364145 -88609995 + MLT1K LTR MaLR 248 513 -75 22 0 0 0 chrX 88364149 88364171 -88609969 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 88364724 88364757 -88609383 + AT_rich Low_complexity Low_complexity 1 33 0 500 356 45 8 chrX 88364933 88365180 -88608960 - MIR SINE MIR 0 262 7 24 0 0 0 chrX 88365719 88365743 -88608397 + AT_rich Low_complexity Low_complexity 1 24 0 398 279 173 46 chrX 88366601 88366884 -88607256 - L2 LINE L2 -1215 2099 1781 222 286 131 0 chrX 88366826 88366910 -88607230 - MIR SINE MIR -109 153 59 * 1536 57 0 52 chrX 88366911 88367121 -88607019 - AluY SINE Alu -14 297 99 191 284 211 11 chrX 88369047 88369142 -88604998 + MIR3 SINE MIR 95 208 0 246 32 0 0 chrX 88371030 88371061 -88603079 + (GA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chrX 88371644 88371669 -88602471 + (TG)n Simple_repeat Simple_repeat 2 26 0 3722 194 38 50 chrX 88373392 88374661 -88599479 - L1MB1 LINE L1 -691 5621 4343 1625 237 92 7 chrX 88374657 88375104 -88599036 + L1MB1 LINE L1 5616 6100 -89 * 1805 200 190 106 chrX 88375537 88376088 -88598052 - L1MD3 LINE L1 0 7995 7492 242 194 11 161 chrX 88376088 88376181 -88597959 - MLT1F1 LTR MaLR -448 119 41 1805 200 190 106 chrX 88376181 88376551 -88597589 - L1MD3 LINE L1 -503 7492 6685 9240 197 135 96 chrX 88377067 88378910 -88595230 + L1PA15-16 LINE L1 3 1772 -5077 189 0 0 0 chrX 88378910 88378931 -88595209 + (TAA)n Simple_repeat Simple_repeat 3 23 0 9240 197 135 96 chrX 88378931 88378975 -88595165 + L1PA15-16 LINE L1 1772 1813 -5036 856 162 0 7 chrX 88378975 88379117 -88595023 + AluSg/x SINE Alu 169 309 -1 9240 197 135 96 chrX 88379117 88381520 -88592620 + L1PA15-16 LINE L1 1813 4541 -2308 411 211 56 11 chrX 88381872 88381962 -88592178 + MLT1A2 LTR MaLR 1 94 -280 * 465 148 74 0 chrX 88381961 88382042 -88592098 + MLT1B LTR MaLR 302 388 -2 290 398 76 12 chrX 88382657 88382828 -88591312 + L2 LINE L2 2707 2888 -426 1859 178 116 10 chrX 88382828 88383215 -88590925 + MSTA LTR MaLR 1 428 0 4086 137 11 40 chrX 88383217 88383934 -88590206 + MSTA-int LTR MaLR 3 698 -882 791 161 141 0 chrX 88383934 88384083 -88590057 + MSTA LTR MaLR 259 428 0 360 432 62 25 chrX 88384083 88384451 -88589689 + L2 LINE L2 2882 3263 -9 377 171 12 0 chrX 88386104 88386186 -88587954 - L1MA9 LINE L1 -2 6310 6228 586 183 32 0 chrX 88386187 88386313 -88587827 + L1MA9 LINE L1 5936 6065 -247 21 57 0 0 chrX 88386605 88386640 -88587500 + AT_rich Low_complexity Low_complexity 1 35 0 2766 152 15 27 chrX 88386687 88387212 -88586928 - L1MA6 LINE L1 0 6300 5782 288 31 115 10 chrX 88387214 88387310 -88586830 + (TA)n Simple_repeat Simple_repeat 2 107 0 420 113 69 6 chrX 88387337 88387496 -88586644 + (TA)n Simple_repeat Simple_repeat 1 169 0 * 500 71 38 82 chrX 88387459 88387642 -88586498 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 40 0 0 0 chrX 88387642 88387682 -88586458 + AT_rich Low_complexity Low_complexity 1 40 0 432 34 116 7 chrX 88387682 88387828 -88586312 + (TA)n Simple_repeat Simple_repeat 2 163 0 932 141 32 0 chrX 88387835 88387991 -88586149 - L1MA6 LINE L1 -494 5806 5646 5641 194 44 8 chrX 88387997 88389440 -88584700 + L1MA6 LINE L1 4134 5621 -679 * 6546 263 99 39 chrX 88389435 88394313 -88579827 - L1MD3 LINE L1 -20 8255 3095 4470 17 0 2 chrX 88394392 88394910 -88579230 - L1PA3 LINE L1 0 6155 5639 8449 23 0 2 chrX 88394910 88396185 -88577955 + L1PA3 LINE L1 4365 5636 -519 462 249 11 22 chrX 88396268 88396453 -88577687 + L1M4 LINE L1 2783 2965 -3181 24 53 0 0 chrX 88396453 88396491 -88577649 + AT_rich Low_complexity Low_complexity 1 38 0 1186 280 87 12 chrX 88396493 88397359 -88576781 - L1MD3 LINE L1 -3423 3003 2064 363 23 0 0 chrX 88397359 88397403 -88576737 + (CA)n Simple_repeat Simple_repeat 1 44 0 1186 280 87 12 chrX 88397403 88397632 -88576508 - L1MD3 LINE L1 -4362 2064 1853 714 259 89 58 chrX 88397638 88397743 -88576397 - L1MD3 LINE L1 -4891 1535 1435 300 27 0 0 chrX 88397743 88397780 -88576360 + (TG)n Simple_repeat Simple_repeat 2 38 0 714 259 89 58 chrX 88397780 88398102 -88576038 - L1MD3 LINE L1 -4991 1435 1095 183 42 0 0 chrX 88398139 88398163 -88575977 + (TTTTTA)n Simple_repeat Simple_repeat 1 24 0 4877 177 21 7 chrX 88398198 88399250 -88574890 - L1MA4 LINE L1 -94 6206 5148 185 333 0 0 chrX 88400681 88400741 -88573399 + MIR SINE MIR 66 125 -137 432 255 133 43 chrX 88400896 88401084 -88573056 - MER63A DNA MER1_type -5 205 1 337 246 87 8 chrX 88401590 88401716 -88572424 - L1ME4a LINE L1 -26 6095 5960 5808 172 23 6 chrX 88402231 88403747 -88570393 - L1MA4A LINE L1 -5 6298 4759 23 0 0 0 chrX 88403792 88403815 -88570325 + AT_rich Low_complexity Low_complexity 1 23 0 2105 209 44 61 chrX 88404105 88404740 -88569400 + MLT1E3 LTR MaLR 1 624 0 192 413 36 32 chrX 88404774 88405021 -88569119 + L2 LINE L2 201 448 -2866 404 288 36 7 chrX 88405181 88405320 -88568820 + MLT1J LTR MaLR 37 179 -332 645 185 25 64 chrX 88405549 88405603 -88568537 - MSTA LTR MaLR -277 151 96 1624 193 10 7 chrX 88405603 88405908 -88568232 + AluJb SINE Alu 1 306 -6 645 185 25 64 chrX 88405908 88406010 -88568130 - MSTA LTR MaLR -332 96 1 608 209 27 0 chrX 88406065 88406175 -88567965 - AluJo SINE Alu -128 184 72 5540 251 50 28 chrX 88406182 88408384 -88565756 + L1PA15 LINE L1 999 3313 -4271 1681 135 113 11 chrX 88408384 88408666 -88565474 - AluSx SINE Alu -1 311 1 5540 251 50 28 chrX 88408666 88409536 -88564604 + L1PA15 LINE L1 3313 4163 -3421 4520 185 17 2 chrX 88409541 88410838 -88563302 + L1PA15 LINE L1 6170 7489 -114 665 60 60 0 chrX 88410821 88410921 -88563219 + L1MA1 LINE L1 6092 6197 -105 * 783 145 8 0 chrX 88410935 88411066 -88563074 + L1PA15 LINE L1 7467 7598 -5 682 267 62 0 chrX 88411161 88411356 -88562784 - MIR SINE MIR -55 207 1 2473 87 0 0 chrX 88411523 88411835 -88562305 - AluSx SINE Alu 0 312 1 199 389 9 9 chrX 88412167 88412280 -88561860 + L2 LINE L2 1125 1237 -2077 389 259 48 48 chrX 88414685 88414832 -88559308 + MIR SINE MIR 60 206 -56 329 176 121 22 chrX 88415010 88415101 -88559039 + MER53 DNA DNA 1 100 -89 191 314 29 0 chrX 88416284 88416354 -88557786 + MIR SINE MIR 73 144 -118 4294 156 13 7 chrX 88418138 88418497 -88555643 - L1PB4 LINE L1 -3 6153 5798 198 0 0 0 chrX 88418497 88418519 -88555621 + (TG)n Simple_repeat Simple_repeat 2 23 0 4294 156 13 7 chrX 88418519 88418922 -88555218 - L1PB4 LINE L1 -358 5798 5386 * 21986 109 10 2 chrX 88418917 88423083 -88551057 - L1PA8 LINE L1 -4 6168 1970 10109 225 106 93 chrX 88423074 88425981 -88548159 + L1PB3 LINE L1 373 3496 -2650 * 497 268 8 0 chrX 88425981 88426108 -88548032 + MLT1A1 LTR MaLR 6 133 -232 10109 225 106 93 chrX 88426108 88428041 -88546099 + L1PB3 LINE L1 3496 5403 -743 1911 126 3 3 chrX 88428041 88428342 -88545798 + L1P4 LINE L1 5470 5770 -396 12199 235 35 18 chrX 88428375 88434316 -88539824 + L1PA16 LINE L1 3 5215 -1655 3569 94 14 20 chrX 88434316 88434869 -88539271 + L1MA1 LINE L1 5753 6302 0 12199 235 35 18 chrX 88434869 88436182 -88537958 + L1PA16 LINE L1 5215 6504 -366 2057 143 82 31 chrX 88436210 88436262 -88537878 + L1PB3 LINE L1 5658 5706 -448 2057 179 0 0 chrX 88436262 88436619 -88537521 + L1PB3 LINE L1 5792 6148 -6 2057 143 82 31 chrX 88436619 88436741 -88537399 + L1PB3 LINE L1 5706 6148 -6 1199 129 29 5 chrX 88436760 88436969 -88537171 + L1PA16 LINE L1 6660 6873 -9 27 49 0 0 chrX 88436969 88437010 -88537130 + AT_rich Low_complexity Low_complexity 1 41 0 240 282 24 16 chrX 88437123 88437247 -88536893 + L1P5 LINE L1 5328 5452 -702 1291 125 0 15 chrX 88437309 88437509 -88536631 - L1P LINE L1 -2007 4139 3943 * 7988 141 46 3 chrX 88437502 88439746 -88534394 + L1PA10 LINE L1 3837 6177 0 1678 303 74 46 chrX 88439746 88442884 -88531256 - L1MEc LINE L1 -3524 3417 37 1937 312 47 22 chrX 88442904 88443679 -88530461 - L2 LINE L2 -599 2715 1922 638 311 145 16 chrX 88443679 88443829 -88530311 - L2 LINE L2 -1723 1591 1462 198 71 0 0 chrX 88443829 88443857 -88530283 + (TG)n Simple_repeat Simple_repeat 1 28 0 638 311 145 16 chrX 88443857 88444024 -88530116 - L2 LINE L2 -1852 1462 1233 928 284 85 39 chrX 88444133 88444570 -88529570 + MLT1H LTR MaLR 73 625 -1 295 347 45 63 chrX 88444669 88444891 -88529249 + L2 LINE L2 3015 3232 -40 13173 187 26 11 chrX 88444962 88445184 -88528956 + L1M1 LINE L1 15 232 -7333 396 0 0 0 chrX 88445184 88445228 -88528912 + (CA)n Simple_repeat Simple_repeat 1 44 0 13173 187 26 11 chrX 88445228 88448131 -88526009 + L1M1 LINE L1 232 4922 -2643 22 0 0 0 chrX 88448847 88448869 -88525271 + AT_rich Low_complexity Low_complexity 1 22 0 339 25 0 0 chrX 88448924 88448964 -88525176 + (TG)n Simple_repeat Simple_repeat 1 40 0 337 234 71 7 chrX 88448994 88449135 -88525005 + L1ME4a LINE L1 5971 6120 -1 1013 212 27 117 chrX 88449443 88449844 -88524296 + MLT1A1 LTR MaLR 1 365 0 662 211 92 133 chrX 88449930 88450267 -88523873 - MER5C DNA MER1_type -1 323 1 237 309 34 63 chrX 88450528 88450735 -88523405 - L1ME3A LINE L1 -8 6162 5962 589 248 203 32 chrX 88450776 88451248 -88522892 - L1MC5 LINE L1 -462 7499 6947 260 297 117 62 chrX 88451924 88452069 -88522071 + L3b LINE CR1 1421 1573 -10 2051 210 26 5 chrX 88452153 88452568 -88521572 + MSTB LTR MaLR 3 426 0 4917 103 54 37 chrX 88452596 88453937 -88520203 - pTR5 LTR ERV1 0 2438 743 742 319 87 35 chrX 88454450 88454885 -88519255 + L3 LINE CR1 1041 1498 -79 22 35 0 0 chrX 88455237 88455266 -88518874 + AT_rich Low_complexity Low_complexity 1 29 0 378 303 27 27 chrX 88455331 88455519 -88518621 + L1MD1 LINE L1 6043 6230 -12 415 243 9 9 chrX 88455520 88455627 -88518513 + L1MD1 LINE L1 6128 6234 -8 539 203 8 8 chrX 88455707 88455830 -88518310 - Charlie1 DNA MER1_type -22 2739 2617 638 141 102 0 chrX 88456175 88456303 -88517837 + L1MB1 LINE L1 6028 6168 0 1310 237 128 5 chrX 88456629 88457060 -88517080 - Charlie1 DNA MER1_type -164 2597 2114 25 31 0 0 chrX 88457169 88457201 -88516939 + AT_rich Low_complexity Low_complexity 1 32 0 1499 213 65 14 chrX 88457323 88457676 -88516464 - MLT1C LTR MaLR -33 434 64 1584 213 87 8 chrX 88457731 88458098 -88516042 - MLT1C-int LTR MaLR -6 1365 970 3027 214 47 3 chrX 88458119 88458798 -88515342 - MLT1C-int LTR MaLR -660 711 3 912 241 25 25 chrX 88458805 88459016 -88515124 - L1ME3A LINE L1 -339 5827 5614 2206 243 21 32 chrX 88459016 88459229 -88514911 + MLT2B3 LTR ERVL 1 215 -339 294 29 0 0 chrX 88459229 88459264 -88514876 + (TC)n Simple_repeat Simple_repeat 1 35 0 2206 243 21 32 chrX 88459264 88459610 -88514530 + MLT2B3 LTR ERVL 215 554 0 912 241 25 25 chrX 88459610 88459634 -88514506 - L1ME3A LINE L1 -551 5615 5592 * 5884 194 19 2 chrX 88459630 88461094 -88513046 - L1MC1 LINE L1 0 6333 4843 1558 193 39 75 chrX 88461106 88461196 -88512944 + L1M4 LINE L1 4365 4457 -1689 411 92 0 0 chrX 88461196 88461261 -88512879 + (TA)n Simple_repeat Simple_repeat 2 66 0 264 100 0 0 chrX 88461268 88461308 -88512832 + (TG)n Simple_repeat Simple_repeat 2 41 0 1558 193 39 75 chrX 88461308 88461717 -88512423 + L1M4 LINE L1 4463 4854 -1292 472 226 89 7 chrX 88461698 88461844 -88512296 - L1ME3A LINE L1 -550 5614 5457 * 186 43 0 0 chrX 88464187 88464210 -88509930 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 254 86 0 0 chrX 88464587 88464622 -88509518 + L1P4 LINE L1 5702 5736 -432 967 219 8 68 chrX 88464630 88464867 -88509273 - MER52A LTR ERV1 -158 1597 1375 2774 86 39 12 chrX 88464867 88465159 -88508981 + L1PA13 LINE L1 5740 6048 -115 5886 196 194 29 chrX 88465159 88466665 -88507475 - MER52A LTR ERV1 0 1755 1 2774 86 39 12 chrX 88466665 88466781 -88507359 + L1PA13 LINE L1 6048 6159 -4 182 322 0 17 chrX 88467488 88467547 -88506593 + L3b LINE CR1 1421 1478 -105 1721 195 32 0 chrX 88467720 88468063 -88506077 - L1MB7 LINE L1 -171 6013 5660 236 170 19 0 chrX 88468071 88468124 -88506016 - LTR66 LTR ERVL -163 447 394 270 248 7 13 chrX 88468125 88468274 -88505866 + (TA)n Simple_repeat Simple_repeat 1 148 0 822 197 6 18 chrX 88468285 88468459 -88505681 - L1MB7 LINE L1 -530 5639 5471 237 33 0 0 chrX 88468459 88468489 -88505651 + (TG)n Simple_repeat Simple_repeat 1 30 0 822 197 6 18 chrX 88468489 88468503 -88505637 - L1MB7 LINE L1 -698 5471 5458 * 1815 278 45 12 chrX 88468502 88468650 -88505490 - L1M4 LINE L1 -2727 3419 3277 201 39 0 0 chrX 88468650 88468676 -88505464 + (TC)n Simple_repeat Simple_repeat 1 26 0 1815 278 45 12 chrX 88468676 88468928 -88505212 - L1M4 LINE L1 -2869 3277 3035 2272 96 0 10 chrX 88468928 88469230 -88504910 + AluSc SINE Alu 1 299 -10 252 0 0 0 chrX 88469230 88469258 -88504882 + (TA)n Simple_repeat Simple_repeat 2 29 0 1815 278 45 12 chrX 88469258 88469712 -88504428 - L1M4 LINE L1 -3110 3036 2534 13371 186 41 7 chrX 88469724 88476298 -88497842 - L1MA3 LINE L1 0 7724 925 * 18427 186 35 8 chrX 88476294 88480583 -88493557 - L1 LINE L1 -3124 4441 36 1188 286 60 65 chrX 88480552 88481153 -88492987 - L1MDa LINE L1 -5912 628 31 * 336 143 0 0 chrX 88482043 88482099 -88492041 + (CATA)n Simple_repeat Simple_repeat 3 58 0 798 350 0 12 chrX 88482678 88482921 -88491219 - MIR SINE MIR 0 262 23 6819 24 0 0 chrX 88483104 88483894 -88490246 - L1PA3 LINE L1 -3 6152 5363 11386 25 0 0 chrX 88483894 88485239 -88488901 + L1PA3 LINE L1 4012 5356 -790 323 365 94 10 chrX 88485260 88485463 -88488677 + L3 LINE CR1 542 761 -816 24 32 0 0 chrX 88485468 88485499 -88488641 + AT_rich Low_complexity Low_complexity 1 31 0 929 141 38 38 chrX 88485663 88485847 -88488293 - THE1C LTR MaLR 0 375 192 376 343 96 6 chrX 88486123 88486289 -88487851 + L3 LINE CR1 1318 1498 -79 2077 167 8 3 chrX 88486350 88486710 -88487430 - L1PB4 LINE L1 -12 6144 5783 187 79 53 0 chrX 88486770 88486808 -88487332 + (CTATA)n Simple_repeat Simple_repeat 2 41 0 * 188 159 48 16 chrX 88486803 88486866 -88487274 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 2133 152 13 16 chrX 88486883 88487258 -88486882 + THE1C LTR MaLR 1 374 -1 9531 120 37 38 chrX 88487259 88488832 -88485308 + THE1C-int LTR MaLR 1 1571 -9 2340 134 11 8 chrX 88488842 88489214 -88484926 + THE1C LTR MaLR 3 375 0 249 91 23 0 chrX 88489226 88489270 -88484870 - MADE1 DNA Mariner 0 80 36 234 59 35 71 chrX 88489271 88489356 -88484784 + (TA)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chrX 88489615 88489638 -88484502 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chrX 88490438 88490461 -88483679 + (CA)n Simple_repeat Simple_repeat 2 24 0 2288 166 5 12 chrX 88490941 88491352 -88482788 + L1MB2 LINE L1 5734 6141 -30 27 0 0 0 chrX 88491390 88491417 -88482723 + AT_rich Low_complexity Low_complexity 1 27 0 399 355 150 22 chrX 88491424 88491976 -88482164 + L2 LINE L2 2349 2971 -343 1629 261 105 40 chrX 88492070 88492906 -88481234 - L1ME3A LINE L1 -16 6957 6067 375 168 18 11 chrX 88492903 88492994 -88481146 + L1MB2 LINE L1 6079 6183 0 * 26 0 0 0 chrX 88492998 88493024 -88481116 + AT_rich Low_complexity Low_complexity 1 26 0 183 375 99 0 chrX 88493024 88493176 -88480964 + L2 LINE L2 2349 2515 -799 2288 91 0 23 chrX 88493269 88493576 -88480564 - AluSx SINE Alu -12 300 1 592 299 66 44 chrX 88493576 88494094 -88480046 - L1ME3A LINE L1 -955 6002 5474 229 276 11 11 chrX 88494166 88494253 -88479887 - L1ME3A LINE L1 -2099 4858 4772 5985 261 45 26 chrX 88494293 88497808 -88476332 - L1PA16 LINE L1 -2812 3985 4 4539 197 15 4 chrX 88497803 88499263 -88474877 + L1PA16 LINE L1 3989 6809 -8 * 290 288 103 0 chrX 88499271 88499417 -88474723 - L1ME3A LINE L1 -2228 4729 4569 491 281 115 22 chrX 88499469 88499885 -88474255 - L1ME3A LINE L1 -2471 4486 4032 515 301 7 62 chrX 88500042 88500314 -88473826 - MLT1H LTR MaLR -240 309 53 405 260 62 31 chrX 88500371 88500694 -88473446 - L1ME3A LINE L1 -2925 4032 3700 4323 211 30 1 chrX 88500755 88501598 -88472542 - ERVL LTR ERVL -3553 2211 1345 1988 288 31 6 chrX 88501598 88502451 -88471689 - L1ME3A LINE L1 -4555 2404 1537 1051 241 37 64 chrX 88502430 88502804 -88471336 - L1ME3A LINE L1 -5567 1292 929 * 195 42 0 0 chrX 88503393 88503417 -88470723 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 315 316 71 31 chrX 88503452 88503648 -88470492 - L1ME3A LINE L1 -6643 216 13 275 335 122 0 chrX 88503723 88503920 -88470220 - L1MEc LINE L1 -4586 1810 1590 395 327 60 23 chrX 88503989 88504206 -88469934 - L1MEc LINE L1 -4924 1472 1248 226 244 47 23 chrX 88504382 88504468 -88469672 - L1MEc LINE L1 -5147 1071 984 21 0 0 0 chrX 88504517 88504538 -88469602 + AT_rich Low_complexity Low_complexity 1 21 0 348 328 74 18 chrX 88504538 88504767 -88469373 - L1MEc LINE L1 -5407 989 748 241 277 223 27 chrX 88505477 88505589 -88468551 + L2 LINE L2 3137 3270 -2 30 0 0 0 chrX 88505648 88505678 -88468462 + AT_rich Low_complexity Low_complexity 1 30 0 1343 189 96 7 chrX 88506697 88506978 -88467162 + AluJb SINE Alu 1 306 -6 24 0 0 0 chrX 88507004 88507028 -88467112 + AT_rich Low_complexity Low_complexity 1 24 0 866 289 28 55 chrX 88507529 88507927 -88466213 + L1MDa LINE L1 57 443 -6097 305 361 103 68 chrX 88507997 88508543 -88465597 + L1MDa LINE L1 387 951 -5589 497 176 20 33 chrX 88508777 88508930 -88465210 + (TA)n Simple_repeat Simple_repeat 1 151 0 262 289 0 0 chrX 88508935 88509025 -88465115 - L1MC4 LINE L1 -1339 6703 6614 315 213 0 0 chrX 88509025 88509100 -88465040 + (TA)n Simple_repeat Simple_repeat 2 76 0 270 231 0 44 chrX 88509108 88509199 -88464941 - L1MC4 LINE L1 -1342 6700 6614 * 325 217 0 22 chrX 88509119 88509211 -88464929 + L1MC4 LINE L1 6614 6703 -1339 285 98 0 0 chrX 88509442 88509483 -88464657 + (CA)n Simple_repeat Simple_repeat 2 42 0 903 215 57 27 chrX 88509505 88509803 -88464337 + L1MDa LINE L1 1002 1308 -5235 237 160 0 20 chrX 88510503 88510553 -88463587 + L1MDa LINE L1 1462 1510 -5032 417 212 26 18 chrX 88510678 88510791 -88463349 + L1MDb LINE L1 845 958 -5451 256 335 35 58 chrX 88511809 88511982 -88462158 + L1M2a LINE L1 1545 1713 -5455 5269 166 76 4 chrX 88512015 88513250 -88460890 - L1PBa LINE L1 -4524 2339 872 684 266 5 0 chrX 88513226 88513414 -88460726 - L1PBa LINE L1 -6669 194 6 * 38 85 0 0 chrX 88513742 88513836 -88460304 + AT_rich Low_complexity Low_complexity 1 94 0 18611 184 37 16 chrX 88514399 88521942 -88452198 + L1MA2 LINE L1 13 7723 0 1593 201 7 24 chrX 88523487 88523785 -88450355 + AluJb SINE Alu 3 295 -17 2386 71 10 0 chrX 88523922 88524219 -88449921 + AluSg SINE Alu 1 300 -10 402 322 14 28 chrX 88524558 88524701 -88449439 - MIR SINE MIR -108 154 14 1751 230 81 81 chrX 88526474 88527375 -88446765 + L1MC5 LINE L1 6625 7470 -491 251 28 28 0 chrX 88527386 88527422 -88446718 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 9802 24 0 14 chrX 88527454 88529404 -88444736 - L1PA3 LINE L1 -3 6152 4222 412 311 39 39 chrX 88529562 88529742 -88444398 + L1ME3A LINE L1 5976 6155 -15 878 301 101 14 chrX 88529912 88530268 -88443872 - LTR16A LTR ERVL -7 443 57 182 229 0 42 chrX 88530424 88530472 -88443668 - MIR SINE MIR -113 149 104 457 352 77 0 chrX 88530509 88530705 -88443435 - MIR SINE MIR -48 214 4 309 232 110 97 chrX 88531695 88531932 -88442208 + L2 LINE L2 3074 3313 0 2427 70 0 3 chrX 88533540 88533840 -88440300 - AluSq SINE Alu -14 299 1 315 122 0 0 chrX 88534976 88535025 -88439115 + (CA)n Simple_repeat Simple_repeat 2 50 0 200 268 14 0 chrX 88535370 88535441 -88438699 + (ATG)n Simple_repeat Simple_repeat 3 74 0 29 47 0 0 chrX 88536987 88537030 -88437110 + AT_rich Low_complexity Low_complexity 1 43 0 273 289 0 0 chrX 88539367 88539443 -88434697 + MIR SINE MIR 187 262 0 28 0 0 0 chrX 88539842 88539870 -88434270 + AT_rich Low_complexity Low_complexity 1 28 0 451 286 9 0 chrX 88540897 88541002 -88433138 - L2 LINE L2 -9 3304 3199 24 0 0 0 chrX 88541062 88541086 -88433054 + AT_rich Low_complexity Low_complexity 1 24 0 268 298 24 0 chrX 88544903 88544987 -88429153 + MIR SINE MIR 61 146 -62 194 272 61 35 chrX 88546545 88546659 -88427481 + MIR SINE MIR 109 225 -37 277 307 139 15 chrX 88546724 88546861 -88427279 - MIR SINE MIR -78 184 31 216 171 0 0 chrX 88547223 88547258 -88426882 + (CA)n Simple_repeat Simple_repeat 2 36 0 674 97 0 0 chrX 88547588 88547691 -88426449 + L1MA5 LINE L1 6196 6298 -2 221 234 21 0 chrX 88549820 88549867 -88424273 + GA-rich Low_complexity Low_complexity 3 50 0 195 162 0 0 chrX 88550034 88550071 -88424069 + CT-rich Low_complexity Low_complexity 6 42 0 1939 68 32 0 chrX 88550776 88550969 -88423171 - AluY SINE Alu 0 311 117 489 34 0 0 chrX 88550969 88551028 -88423112 + (TG)n Simple_repeat Simple_repeat 2 60 0 1939 68 32 0 chrX 88551028 88551114 -88423026 - AluY SINE Alu -194 117 35 22 0 0 0 chrX 88551274 88551296 -88422844 + AT_rich Low_complexity Low_complexity 1 22 0 2143 148 62 30 chrX 88551638 88552154 -88421986 - MLT2A2 LTR ERVL 0 554 1 221 245 0 0 chrX 88552839 88552892 -88421248 + (ATG)n Simple_repeat Simple_repeat 1 53 0 2023 266 63 20 chrX 88554192 88554877 -88419263 + L1MEc LINE L1 63 776 -5620 1263 182 50 17 chrX 88554879 88554936 -88419204 - MER45B DNA AcHobo -546 1035 981 1497 24 9 76 chrX 88554936 88555147 -88418993 + L1PA4 LINE L1 5959 6155 0 1263 182 50 17 chrX 88555147 88555386 -88418754 - MER45B DNA AcHobo -600 981 729 775 334 63 34 chrX 88555502 88555882 -88418258 - MER45C DNA AcHobo -177 776 386 378 330 96 62 chrX 88557261 88557679 -88416461 + L2 LINE L2 2839 3270 -43 538 281 75 19 chrX 88558493 88558653 -88415487 + MIR SINE MIR 6 174 -88 2409 135 6 3 chrX 88558663 88559026 -88415114 + THE1B LTR MaLR 1 364 0 956 100 20 0 chrX 88559028 88559178 -88414962 + THE1B-int LTR MaLR 3 155 -1496 * 7074 140 10 0 chrX 88559164 88560208 -88413932 + THE1B-int LTR MaLR 523 1576 -4 2291 160 6 3 chrX 88560212 88560575 -88413565 + THE1B LTR MaLR 1 364 0 319 253 0 12 chrX 88560575 88560658 -88413482 + MIR SINE MIR 177 258 -4 592 225 23 8 chrX 88561177 88561306 -88412834 + MIR3 SINE MIR 68 198 -10 457 189 21 11 chrX 88562898 88562993 -88411147 + MER4A LTR ERV1 1 96 -568 1662 143 159 73 chrX 88562995 88563367 -88410773 + MER4A LTR ERV1 261 664 0 6962 118 68 53 chrX 88563369 88563818 -88410322 + MER4A-int LTR ERV1 1 442 -4573 7727 110 14 0 chrX 88563818 88565772 -88408368 + L1PA8 LINE L1 4200 6172 0 6962 118 68 53 chrX 88565772 88567465 -88406675 + MER4A-int LTR ERV1 442 1638 -3377 1169 197 75 0 chrX 88567473 88567712 -88406428 - LTR8 LTR ERV1 -434 257 1 3863 140 82 20 chrX 88567712 88568598 -88405542 + MER4A-int LTR ERV1 2737 3677 -2921 15041 109 51 26 chrX 88568601 88571138 -88403002 + MER4A-int LTR ERV1 3837 6437 -161 524 212 38 33 chrX 88571912 88572096 -88402044 - MER41B LTR ERV1 -205 430 112 369 301 46 80 chrX 88572530 88572792 -88401348 + L2 LINE L2 2552 2804 -510 948 289 71 58 chrX 88572869 88573459 -88400681 - L2 LINE L2 -4 3309 2709 1588 241 52 8 chrX 88573483 88573864 -88400276 + L1M1 LINE L1 14 411 -7154 1273 255 57 17 chrX 88573874 88574509 -88399631 - L1M4 LINE L1 -2607 3539 2880 3067 185 25 35 chrX 88574585 88574764 -88399376 - L1PB4 LINE L1 -7 6149 5970 2664 28 6 25 chrX 88574764 88575081 -88399059 - AluY SINE Alu 0 311 1 3067 185 25 35 chrX 88575081 88575583 -88398557 - L1PB4 LINE L1 -186 5970 5475 25 31 0 0 chrX 88575583 88575615 -88398525 + AT_rich Low_complexity Low_complexity 1 32 0 8126 202 25 3 chrX 88576272 88579047 -88395093 - L1PA13 LINE L1 -13 6150 3326 347 313 7 20 chrX 88579049 88579199 -88394941 - L1 LINE L1 -2884 3262 3115 31 26 0 0 chrX 88579203 88579241 -88394899 + AT_rich Low_complexity Low_complexity 1 38 0 1302 39 0 0 chrX 88579286 88579440 -88394700 - L1PA3 LINE L1 -3 6152 5999 5788 103 24 34 chrX 88579440 88580208 -88393932 + L1P LINE L1 2776 3533 -2613 1077 117 0 0 chrX 88580208 88580371 -88393769 - L1MA1 LINE L1 -1 6301 6139 5788 103 24 34 chrX 88580371 88580601 -88393539 + L1P LINE L1 3533 3764 -2382 1782 90 8 4 chrX 88580628 88580884 -88393256 + L1PB1 LINE L1 5895 6151 0 4387 116 24 6 chrX 88581091 88581791 -88392349 - L1MA1 LINE L1 -162 6140 5428 13391 181 34 11 chrX 88581805 88586083 -88388057 - L1MA1 LINE L1 0 7721 3361 3652 285 22 7 chrX 88586101 88587391 -88386749 - L1PA12 LINE L1 -3114 4470 3161 1989 28 36 0 chrX 88587391 88587638 -88386502 - L1PA5 LINE L1 0 6154 5899 3177 35 3 0 chrX 88587638 88588013 -88386127 + L1PA5 LINE L1 5543 5918 -236 2535 252 29 17 chrX 88588008 88588986 -88385154 - L1PA12 LINE L1 -4407 3177 2179 * 322 110 19 15 chrX 88589410 88589488 -88384652 + L1M1 LINE L1 2345 2809 -4740 520 372 48 10 chrX 88589917 88590315 -88383825 - L1PA12 LINE L1 -7168 413 1 1066 201 39 0 chrX 88590315 88590686 -88383454 - L1P5 LINE L1 -672 5484 5100 6210 239 27 11 chrX 88590708 88591571 -88382569 - L1 LINE L1 -1412 4734 3886 2085 150 126 5 chrX 88591571 88591951 -88382189 - MSTA LTR MaLR 0 428 3 6210 239 27 11 chrX 88591951 88592893 -88381247 - L1 LINE L1 -2260 3886 2901 4464 243 72 11 chrX 88592898 88594566 -88379574 - L1PBb LINE L1 -3699 2504 690 270 0 0 0 chrX 88595083 88595113 -88379027 + (CA)n Simple_repeat Simple_repeat 1 30 0 817 240 36 14 chrX 88595748 88596027 -88378113 - L1 LINE L1 -3250 2896 2612 1371 175 19 0 chrX 88596028 88596297 -88377843 + L1P LINE L1 3094 3367 -2779 3788 111 29 6 chrX 88596312 88596860 -88377280 + LTR9B LTR ERV1 1 561 -83 3036 133 0 12 chrX 88596876 88597356 -88376784 + L1P LINE L1 3369 3842 -2304 12328 213 19 9 chrX 88597357 88601047 -88373093 + L1PA15 LINE L1 2310 6019 -146 2703 72 120 0 chrX 88601053 88601453 -88372687 - LTR7 LTR ERV1 -2 448 1 2374 108 45 13 chrX 88601453 88601833 -88372307 - HERVH LTR ERV1 0 7713 7322 1376 139 19 0 chrX 88601831 88602047 -88372093 - HERVH LTR ERV1 -1894 5819 5600 * 32618 104 39 22 chrX 88602048 88607116 -88367024 - HERVH LTR ERV1 -2564 5149 1 2744 68 120 0 chrX 88607118 88607518 -88366622 - LTR7 LTR ERV1 -2 448 1 721 148 0 8 chrX 88607522 88607650 -88366490 + L1PA15 LINE L1 6023 6149 -16 263 135 27 81 chrX 88607661 88607735 -88366405 - L1MA9 LINE L1 -28 6284 6215 2244 232 19 2 chrX 88609005 88609570 -88364570 + L1PB3 LINE L1 2413 2987 -3159 * 8326 175 14 11 chrX 88609568 88612174 -88361966 + L1PB3 LINE L1 3541 6152 -2 198 71 0 0 chrX 88612178 88612206 -88361934 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 24 32 0 0 chrX 88612634 88612665 -88361475 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chrX 88612689 88612714 -88361426 + AT_rich Low_complexity Low_complexity 1 25 0 339 221 156 16 chrX 88614651 88614773 -88359367 + MIR SINE MIR 91 229 -33 2023 145 34 29 chrX 88615111 88615462 -88358678 - Tigger1 DNA MER2_type 0 2418 2066 4801 198 30 16 chrX 88615462 88616875 -88357265 + L1PA13 LINE L1 1186 2749 -4048 1689 88 4 0 chrX 88616875 88617103 -88357037 - THE1A LTR MaLR 0 355 127 303 93 0 0 chrX 88617103 88617146 -88356994 - THE1A-int LTR MaLR -103 1477 1435 1802 87 0 0 chrX 88617153 88617384 -88356756 + THE1-int LTR MaLR 848 1078 -502 9077 190 51 3 chrX 88617384 88619958 -88354182 + L1PA13 LINE L1 4171 6809 -5 9811 140 40 10 chrX 88619959 88620481 -88353659 - Tigger1 DNA MER2_type -345 2073 1568 2938 6 0 0 chrX 88620481 88620799 -88353341 - AluYb8 SINE Alu 0 318 1 9811 140 40 10 chrX 88620799 88622220 -88351920 - Tigger1 DNA MER2_type -850 1568 1 1137 316 104 39 chrX 88622255 88622891 -88351249 + L2 LINE L2 2456 3167 -146 1604 111 141 0 chrX 88622891 88623153 -88350987 - AluSx SINE Alu -3 299 1 1137 316 104 39 chrX 88623153 88623311 -88350829 + L2 LINE L2 3167 3313 0 402 330 34 50 chrX 88623324 88623563 -88350577 - MIR SINE MIR -24 238 4 1168 332 93 34 chrX 88623589 88624393 -88349747 + L3 LINE CR1 681 1532 -45 242 319 11 33 chrX 88624618 88624709 -88349431 + L2 LINE L2 3176 3264 -8 1039 230 71 66 chrX 88624984 88625392 -88348748 - MLT1C LTR MaLR -53 414 5 545 282 196 9 chrX 88625426 88625646 -88348494 - MIR SINE MIR 0 262 2 663 287 114 17 chrX 88625678 88625915 -88348225 - MIR SINE MIR 0 262 3 203 405 45 0 chrX 88625915 88626017 -88348123 + L2 LINE L2 3165 3271 -1 398 269 39 10 chrX 88626662 88626766 -88347374 - MER91C DNA MER1_type -33 107 1 1734 91 0 0 chrX 88627601 88627831 -88346309 - AluY SINE Alu -8 303 74 244 238 88 0 chrX 88628902 88628982 -88345158 - MIR SINE MIR -76 186 100 200 347 28 0 chrX 88629045 88629117 -88345023 - L3b LINE CR1 -214 1369 1296 395 228 6 32 chrX 88629716 88629874 -88344266 + CT-rich Low_complexity Low_complexity 4 157 0 2145 122 18 42 chrX 88629940 88630324 -88343816 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 88635820 88635844 -88338296 + AT_rich Low_complexity Low_complexity 1 24 0 11403 218 45 22 chrX 88636607 88638443 -88335697 - L1MB1 LINE L1 -1 7586 5793 1315 237 10 19 chrX 88638443 88638755 -88335385 - AluJo SINE Alu -3 309 1 11403 218 45 22 chrX 88638755 88641154 -88332986 - L1MB1 LINE L1 -1794 5793 3450 2385 91 0 3 chrX 88641154 88641462 -88332678 - AluSg SINE Alu -3 307 1 11403 218 45 22 chrX 88641462 88641672 -88332468 - L1MB1 LINE L1 -4137 3450 3246 543 113 0 0 chrX 88641672 88641752 -88332388 + MADE1 DNA Mariner 1 80 0 11403 218 45 22 chrX 88641752 88641878 -88332262 - L1MB1 LINE L1 -4341 3246 2901 * 19162 176 50 13 chrX 88641876 88642387 -88331753 - L1MA3 LINE L1 0 7724 7233 2006 153 42 31 chrX 88642387 88642747 -88331393 + THE1B LTR MaLR 1 364 0 11634 85 10 1 chrX 88642747 88644312 -88329828 + THE1B-int LTR MaLR 1 1580 0 2064 129 41 39 chrX 88644312 88644675 -88329465 + THE1B LTR MaLR 1 364 0 19162 176 50 13 chrX 88644675 88647214 -88326926 - L1MA3 LINE L1 -491 7233 4787 201 94 0 0 chrX 88647214 88647246 -88326894 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 19162 176 50 13 chrX 88647246 88651606 -88322534 - L1MA3 LINE L1 -2937 4787 14 916 299 60 13 chrX 88651606 88652058 -88322082 - L1M2 LINE L1 -4327 2406 1934 242 96 0 39 chrX 88652799 88652851 -88321289 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 239 306 14 7 chrX 88652917 88653061 -88321079 - L1M2 LINE L1 -4910 1743 1599 307 299 21 10 chrX 88653156 88653253 -88320887 - L1M2 LINE L1 -5103 1550 1453 541 228 36 46 chrX 88653376 88653595 -88320545 - HAL1 LINE L1 -295 2212 1996 22 0 0 0 chrX 88653626 88653648 -88320492 + AT_rich Low_complexity Low_complexity 1 22 0 946 218 0 0 chrX 88653658 88653846 -88320294 + MER2 DNA MER2_type 22 209 -136 446 0 0 18 chrX 88654076 88654131 -88320009 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 2182 86 4 4 chrX 88654133 88654413 -88319727 - AluY SINE Alu -31 280 1 803 313 55 8 chrX 88654449 88654849 -88319291 - L1ME3A LINE L1 -264 5906 5488 25 0 0 0 chrX 88654887 88654912 -88319228 + AT_rich Low_complexity Low_complexity 1 25 0 626 326 66 50 chrX 88654993 88655450 -88318690 - HAL1 LINE L1 -1572 935 472 337 303 71 74 chrX 88655458 88655824 -88318316 - HAL1 LINE L1 -2100 407 43 1780 188 78 42 chrX 88656299 88656708 -88317432 + MSTB1 LTR MaLR 9 432 0 1310 328 84 22 chrX 88657082 88657728 -88316412 + MER115 DNA AcHobo 8 693 0 29 90 0 0 chrX 88658448 88658526 -88315614 + AT_rich Low_complexity Low_complexity 1 78 0 3823 230 88 34 chrX 88659075 88660581 -88313559 + L1MD2 LINE L1 1152 2732 -3808 1215 213 152 20 chrX 88660584 88660927 -88313213 - MSTD LTR MaLR -8 388 1 5709 242 66 39 chrX 88660927 88662504 -88311636 - MSTD-int LTR MaLR 0 1735 117 641 279 106 3 chrX 88662535 88662818 -88311322 + MER50 LTR ERV1 10 321 -413 3370 145 13 27 chrX 88662820 88663594 -88310546 + L1MA6 LINE L1 5280 6020 -280 2467 123 6 0 chrX 88663362 88663727 -88310413 + L1PB1 LINE L1 5783 6149 -2 * 1181 277 45 62 chrX 88663747 88663898 -88310242 + LTR40a LTR ERVL 105 257 -262 2065 104 10 0 chrX 88663898 88664187 -88309953 + AluSc SINE Alu 1 292 -17 354 80 0 0 chrX 88664195 88664245 -88309895 + (TA)n Simple_repeat Simple_repeat 1 50 0 1181 277 45 62 chrX 88664245 88664506 -88309634 + LTR40a LTR ERVL 264 519 0 393 282 88 8 chrX 88664516 88664709 -88309431 - L1MC/D LINE L1 -297 5824 5625 229 96 19 39 chrX 88664958 88665010 -88309130 + (TA)n Simple_repeat Simple_repeat 2 52 0 1103 109 71 0 chrX 88665356 88665539 -88308601 - L1PA13 LINE L1 0 6163 5968 852 255 36 0 chrX 88665539 88665841 -88308299 + L1MD2 LINE L1 3377 3689 -2851 902 211 33 9 chrX 88665841 88666054 -88308086 + L1MA9 LINE L1 6035 6252 -60 1777 168 9 6 chrX 88666055 88666370 -88307770 + L1PA16 LINE L1 5848 6163 -3 2120 261 33 62 chrX 88666542 88667485 -88306655 + L1MD2 LINE L1 3795 4710 -1830 30 0 0 0 chrX 88667486 88667516 -88306624 + AT_rich Low_complexity Low_complexity 1 30 0 2759 130 2 2 chrX 88667522 88667945 -88306195 - L1PA15 LINE L1 -10 6155 5733 1980 186 84 114 chrX 88667945 88668705 -88305435 + LTR1B LTR ERV1 1 737 -89 2608 269 69 6 chrX 88668877 88669889 -88304251 + L1MD2 LINE L1 4719 5794 -746 297 0 0 0 chrX 88669923 88669946 -88304194 + (TG)n Simple_repeat Simple_repeat 1 56 0 297 0 0 0 chrX 88669946 88669979 -88304161 + (TG)n Simple_repeat Simple_repeat 2 34 0 1507 216 31 50 chrX 88670025 88670409 -88303731 - MLT2D LTR ERVL -37 377 1 3628 220 36 27 chrX 88670411 88671343 -88302797 + L1MD2 LINE L1 5810 6750 -3 242 160 20 0 chrX 88671376 88671426 -88302714 + L1MB7 LINE L1 6132 6182 -2 1415 72 5 10 chrX 88671644 88671851 -88302289 + L1MA2 LINE L1 6099 6304 0 25 31 0 0 chrX 88672915 88672947 -88301193 + AT_rich Low_complexity Low_complexity 1 32 0 1477 218 48 14 chrX 88672975 88673328 -88300812 + MLT1A1 LTR MaLR 1 365 0 323 289 80 80 chrX 88673389 88673738 -88300402 - L1ME4a LINE L1 -78 6043 5695 25 0 0 0 chrX 88673757 88673782 -88300358 + AT_rich Low_complexity Low_complexity 1 25 0 1211 287 80 44 chrX 88673782 88674411 -88299729 - MLT1E3 LTR MaLR -2 622 1 387 268 193 33 chrX 88674620 88674833 -88299307 + MIR SINE MIR 13 259 -3 279 111 0 0 chrX 88675477 88675522 -88298618 + L1PB1 LINE L1 6106 6150 -1 266 293 72 23 chrX 88675804 88676067 -88298073 - HAL1b LINE L1 -22 1326 1051 21 36 0 0 chrX 88676100 88676128 -88298012 + AT_rich Low_complexity Low_complexity 1 28 0 248 258 204 0 chrX 88676187 88676319 -88297821 - HAL1b LINE L1 -452 896 738 301 275 65 29 chrX 88676329 88676467 -88297673 + L1M4 LINE L1 4514 4656 -1490 816 97 14 62 chrX 88676819 88676963 -88297177 - L1MB7 LINE L1 -20 6164 6028 43806 40 2 1 chrX 88676965 88683106 -88291034 + L1PA4 LINE L1 21 6166 0 2665 172 54 11 chrX 88683061 88683631 -88290509 - L1MB7 LINE L1 -141 6043 5485 * 1238 241 92 34 chrX 88683626 88684062 -88290078 - L1MB7 LINE L1 -897 5249 4789 * 824 335 53 43 chrX 88684298 88684829 -88289311 + L1PB4 LINE L1 727 1262 -5587 * 910 268 12 27 chrX 88684822 88685150 -88288990 + L1PB4 LINE L1 1464 1786 -5063 7461 184 19 9 chrX 88685150 88687534 -88286606 - L1PB3 LINE L1 0 6154 3746 3345 243 21 29 chrX 88687530 88689023 -88285117 + L1PB4 LINE L1 1771 3251 -3597 * 7618 185 38 5 chrX 88689021 88691470 -88282670 + L1PB4 LINE L1 4342 6856 -2 3806 241 34 47 chrX 88691481 88692681 -88281459 - L1M4 LINE L1 -5350 1192 8 287 254 28 39 chrX 88692823 88693004 -88281136 + L1MC/D LINE L1 5182 5360 -786 368 297 57 9 chrX 88693512 88693679 -88280461 + L1MC/D LINE L1 5378 5553 -569 3792 128 27 17 chrX 88693697 88694104 -88280036 - L1MA1 LINE L1 0 6302 5900 213 39 0 0 chrX 88694104 88694130 -88280010 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1778 133 0 60 chrX 88694130 88694303 -88279837 - AluSx SINE Alu -30 282 133 279 54 0 0 chrX 88694303 88694340 -88279800 + (TG)n Simple_repeat Simple_repeat 2 38 0 1778 133 0 60 chrX 88694340 88694466 -88279674 - AluSx SINE Alu -179 133 1 3792 128 27 17 chrX 88694466 88694689 -88279451 - L1MA1 LINE L1 -401 5901 5665 6544 187 9 9 chrX 88694689 88694931 -88279209 - L1 LINE L1 -1564 4582 4341 1994 170 89 5 chrX 88694931 88695326 -88278814 - MSTA LTR MaLR 0 428 1 8535 182 24 15 chrX 88695326 88696962 -88277178 - MSTA-int LTR MaLR 0 1651 1 2040 143 97 8 chrX 88696962 88697355 -88276785 - MSTA LTR MaLR 0 428 1 6544 187 9 9 chrX 88697355 88698441 -88275699 - L1 LINE L1 -1802 4344 3252 * 7472 170 19 4 chrX 88698430 88700902 -88273238 - L1PB1 LINE L1 0 6867 4355 9527 150 52 4 chrX 88700907 88703513 -88270627 - L1PB1 LINE L1 -2819 4043 1311 586 131 353 0 chrX 88703515 88703637 -88270503 - L1PB1 LINE L1 -5704 1159 995 * 1246 131 0 0 chrX 88703633 88703831 -88270309 - L1PB1 LINE L1 -6665 198 1 2906 204 37 10 chrX 88703837 88704537 -88269603 - L1 LINE L1 -2871 3991 3273 226 344 0 0 chrX 88704536 88704626 -88269514 + L1ME LINE L1 5537 5626 -544 * 774 252 5 36 chrX 88704904 88705126 -88269014 + AluJo SINE Alu 1 215 -97 291 277 12 36 chrX 88705127 88705210 -88268930 + MLT2D LTR ERVL 273 353 -61 216 97 0 0 chrX 88705223 88705254 -88268886 + (TC)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chrX 88705345 88705370 -88268770 + (TC)n Simple_repeat Simple_repeat 2 26 0 294 148 0 0 chrX 88705375 88705429 -88268711 - MLT2A1 LTR ERVL 0 444 391 189 195 0 0 chrX 88705429 88705470 -88268670 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 331 220 25 10 chrX 88705470 88705569 -88268571 + L1MC4 LINE L1 2006 6983 -1339 2914 82 5 20 chrX 88705578 88705613 -88268527 - MLT2A1 LTR ERVL -45 399 365 315 0 0 0 chrX 88705613 88705648 -88268492 + (CA)n Simple_repeat Simple_repeat 2 36 0 2914 82 5 20 chrX 88705648 88706016 -88268124 - MLT2A1 LTR ERVL -79 365 2 330 75 0 188 chrX 88706020 88706039 -88268101 + MLT2B3 LTR ERVL 456 477 -77 207 0 0 0 chrX 88706039 88706062 -88268078 + (GA)n Simple_repeat Simple_repeat 2 24 0 330 75 0 188 chrX 88706062 88706122 -88268018 + MLT2B3 LTR ERVL 477 554 0 273 89 0 0 chrX 88706719 88706764 -88267376 + (TG)n Simple_repeat Simple_repeat 2 46 0 626 335 27 15 chrX 88706860 88707120 -88267020 - MLT1J LTR MaLR -248 263 1 252 0 0 0 chrX 88708130 88708158 -88265982 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 405 0 0 0 chrX 88708157 88708202 -88265938 + (TG)n Simple_repeat Simple_repeat 2 46 0 14634 216 17 9 chrX 88708684 88709028 -88265112 - L1PB1 LINE L1 -17 6134 5794 198 0 0 0 chrX 88709028 88709050 -88265090 + (TA)n Simple_repeat Simple_repeat 1 22 0 14634 216 17 9 chrX 88709050 88713126 -88261014 - L1PB1 LINE L1 -357 5794 1681 2393 261 52 87 chrX 88763216 88764479 -88209661 - L1MCc LINE L1 -4966 1456 237 1439 231 19 27 chrX 88764779 88765147 -88208993 + MLT1A1 LTR MaLR 1 365 0 1256 158 120 8 chrX 88765576 88765810 -88208330 + MSTA LTR MaLR 1 260 -168 244 304 11 28 chrX 88765970 88766170 -88207970 + GA-rich Low_complexity Low_complexity 1 196 0 760 220 98 19 chrX 88766936 88767150 -88206990 - L1ME1 LINE L1 -18 6148 5918 * 1447 195 49 0 chrX 88767130 88767437 -88206703 - L1ME1 LINE L1 -784 5575 5254 818 172 62 29 chrX 88767642 88767851 -88206289 - MER33 DNA MER1_type -107 217 2 258 297 25 39 chrX 88768635 88768719 -88205421 + MIR SINE MIR 6 88 -120 260 233 167 33 chrX 88769816 88769906 -88204234 - MER5A DNA MER1_type -38 151 50 22 35 0 0 chrX 88770340 88770369 -88203771 + AT_rich Low_complexity Low_complexity 1 29 0 217 338 103 24 chrX 88770420 88770592 -88203548 + MIR3 SINE MIR 3 181 -69 1686 163 6 31 chrX 88771579 88771898 -88202242 + AluJo SINE Alu 1 311 -1 308 320 123 35 chrX 88772526 88772729 -88201411 - MIR SINE MIR -40 222 2 23 0 0 0 chrX 88772739 88772762 -88201378 + AT_rich Low_complexity Low_complexity 1 23 0 398 299 184 16 chrX 88773420 88773664 -88200476 - L2 LINE L2 -1311 2003 1719 406 0 0 36 chrX 88774595 88774651 -88199489 + (TA)n Simple_repeat Simple_repeat 1 54 0 299 283 87 11 chrX 88775170 88775262 -88198878 - MIR SINE MIR -133 129 31 394 0 0 125 chrX 88775333 88775397 -88198743 + L1PA4 LINE L1 6099 6154 -1 391 306 7 7 chrX 88775997 88776144 -88197996 + T-rich Low_complexity Low_complexity 1 147 0 4940 64 0 3 chrX 88777051 88777704 -88196436 + L1P LINE L1 1396 2046 -4100 875 286 26 26 chrX 88777849 88778240 -88195900 + L1ME3A LINE L1 5780 6170 0 317 273 62 62 chrX 88778247 88778423 -88195717 - L2 LINE L2 -24 3289 3114 224 420 132 14 chrX 88778411 88778623 -88195517 - L2 LINE L2 -73 3199 2963 * 413 306 151 12 chrX 88778698 88778956 -88195184 - L2 LINE L2 -453 2861 2568 1817 155 18 3 chrX 88778958 88779287 -88194853 + L1MA1 LINE L1 5969 6302 0 243 0 0 0 chrX 88780063 88780090 -88194050 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 341 136 0 12 chrX 88780619 88780700 -88193440 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 1017 241 46 28 chrX 88783435 88783769 -88190371 + MLT1I LTR MaLR 6 409 0 6748 81 1 2 chrX 88783861 88784776 -88189364 - L1P LINE L1 -1258 4888 3975 1680 231 63 109 chrX 88784878 88785494 -88188646 - MLT1E2 LTR MaLR -66 588 1 1794 174 0 10 chrX 88786691 88786979 -88187161 + AluSx SINE Alu 1 285 -27 2624 129 2 10 chrX 88787004 88787408 -88186732 - MSTA LTR MaLR -27 401 1 820 109 0 0 chrX 88787876 88787986 -88186154 + MSTA LTR MaLR 319 428 0 750 313 100 70 chrX 88788228 88788810 -88185330 + L2 LINE L2 2721 3313 0 6491 79 5 0 chrX 88789432 88790420 -88183720 - L1PA8 LINE L1 -2 6170 5178 5074 99 0 9 chrX 88790420 88791169 -88182971 + L1PA8 LINE L1 4444 5185 -961 1388 226 35 24 chrX 88791196 88791617 -88182523 + L1ME LINE L1 5307 5731 -439 25 0 0 0 chrX 88791830 88791855 -88182285 + AT_rich Low_complexity Low_complexity 1 25 0 703 299 97 19 chrX 88791992 88792313 -88181827 + L2 LINE L2 2968 3313 0 482 232 79 30 chrX 88792337 88792501 -88181639 - L2 LINE L2 -938 2376 2205 389 206 211 86 chrX 88792535 88792687 -88181453 + MLT1H LTR MaLR 132 328 -221 246 311 22 0 chrX 88792763 88792853 -88181287 + MLT1H LTR MaLR 464 555 0 342 314 85 27 chrX 88792990 88793213 -88180927 - L2 LINE L2 -1178 2136 1901 224 206 0 41 chrX 88794297 88794370 -88179770 + (CAA)n Simple_repeat Simple_repeat 3 72 0 5016 124 42 40 chrX 88795041 88795976 -88178164 + L1PA15 LINE L1 5229 6165 0 390 298 18 36 chrX 88796248 88796416 -88177724 - MIR SINE MIR 0 262 98 209 308 0 0 chrX 88796538 88796590 -88177550 + GA-rich Low_complexity Low_complexity 4 55 0 3291 256 58 29 chrX 88798190 88800768 -88173372 - L1 LINE L1 -2975 4590 2078 660 254 61 33 chrX 88801799 88802012 -88172128 - MER20 DNA MER1_type 0 219 1 5803 243 78 9 chrX 88802028 88803497 -88170643 + L1P LINE L1 2788 4393 -1753 2211 123 3 7 chrX 88803497 88803807 -88170333 + AluSq SINE Alu 1 309 -4 5803 243 78 9 chrX 88803807 88804044 -88170096 + L1P LINE L1 4393 4612 -1534 540 57 49 25 chrX 88804355 88804477 -88169663 + (TA)n Simple_repeat Simple_repeat 1 125 0 1707 276 135 45 chrX 88804713 88805882 -88168258 - L1MC4a LINE L1 -543 7265 5991 734 97 73 16 chrX 88806265 88806384 -88167756 + AluSg/x SINE Alu 158 284 -24 183 42 0 0 chrX 88806384 88806408 -88167732 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 1005 271 4 12 chrX 88806752 88807010 -88167130 - L1MC4a LINE L1 -841 6967 6712 475 160 9 9 chrX 88807012 88807118 -88167022 + L1MA4A LINE L1 6002 6107 -196 492 201 19 0 chrX 88807121 88807230 -88166910 + L1MA4A LINE L1 6046 6279 -1 204 125 21 42 chrX 88807726 88807774 -88166366 + A-rich Low_complexity Low_complexity 4 50 0 22778 31 14 0 chrX 88808334 88811852 -88162288 + L1PA3 LINE L1 2623 6152 -3 2545 148 7 2 chrX 88812118 88812531 -88161609 + L1PA15 LINE L1 5640 6054 -111 489 196 0 0 chrX 88812657 88812749 -88161391 + L1PA15 LINE L1 6061 6152 -13 5360 133 36 8 chrX 88813185 88814116 -88160024 - Tigger3b DNA MER2_type 0 1231 274 579 186 10 10 chrX 88814114 88814216 -88159924 - Tigger3b DNA MER2_type -1129 102 1 * 344 238 26 20 chrX 88814300 88814451 -88159689 - L1M LINE L1 -752 5410 5259 1526 292 79 55 chrX 88815139 88816253 -88157887 + L1M4 LINE L1 14 1172 -5424 338 195 25 50 chrX 88816851 88817010 -88157130 + (TTTG)n Simple_repeat Simple_repeat 3 157 0 278 208 111 28 chrX 88818305 88818377 -88155763 + MER81 DNA DNA 1 78 -36 359 232 54 18 chrX 88818488 88818671 -88155469 + MLT1E1 LTR MaLR 49 234 -390 4526 179 27 19 chrX 88818728 88819641 -88154499 - MER49 LTR ERV1 -2 921 1 1254 159 86 0 chrX 88819641 88819861 -88154279 + MLT1E1 LTR MaLR 411 649 -5 1549 174 37 27 chrX 88820228 88820527 -88153613 - AluJb SINE Alu -10 302 1 735 229 57 12 chrX 88820532 88820777 -88153363 - MER112 DNA MER1_type 0 256 1 365 273 85 42 chrX 88820804 88820969 -88153171 + MER5B DNA MER1_type 7 178 0 201 74 0 0 chrX 88820983 88821010 -88153130 + (T)n Simple_repeat Simple_repeat 1 27 0 224 319 0 0 chrX 88821069 88821141 -88152999 + MIR SINE MIR 117 188 -74 593 269 26 26 chrX 88821671 88821864 -88152276 - MIR SINE MIR -12 250 58 1007 182 50 146 chrX 88821870 88822233 -88151907 - MLT2D LTR ERVL -5 409 82 673 267 89 25 chrX 88822293 88822529 -88151611 - MIR SINE MIR -10 252 2 22 35 0 0 chrX 88822630 88822659 -88151481 + AT_rich Low_complexity Low_complexity 1 29 0 249 328 0 0 chrX 88822839 88822897 -88151243 - MIR SINE MIR -185 77 20 380 240 0 83 chrX 88823506 88823698 -88150442 + CT-rich Low_complexity Low_complexity 1 176 0 1058 36 0 7 chrX 88823897 88824036 -88150104 - L1P LINE L1 -3225 2921 2784 4385 125 11 0 chrX 88824036 88824747 -88149393 - L1P LINE L1 -2921 3225 2507 9776 139 59 33 chrX 88824750 88826654 -88147486 - MER4A-int LTR ERV1 -829 5769 3817 3101 139 175 23 chrX 88826683 88827481 -88146659 - MER4A-int LTR ERV1 -2942 3656 2737 1297 180 0 0 chrX 88827481 88827698 -88146442 + LTR8 LTR ERV1 1 217 -474 2342 144 40 42 chrX 88827736 88828350 -88145790 - MER4A-int LTR ERV1 -134 1652 732 * 3135 191 8 12 chrX 88828333 88828374 -88145766 - MER4A-int LTR ERV1 -5975 783 743 1214 47 0 0 chrX 88828374 88828522 -88145618 - L1PA3 LINE L1 0 6155 6008 3135 191 8 12 chrX 88828522 88829067 -88145073 - MER4A-int LTR ERV1 -6015 743 199 1328 227 67 36 chrX 88829104 88829415 -88144725 - MER4A-int LTR ERV1 -4119 2212 1912 1893 130 76 20 chrX 88829415 88829770 -88144370 + THE1C LTR MaLR 1 375 0 9542 138 35 5 chrX 88829770 88831304 -88142836 + THE1C-int LTR MaLR 1 1580 0 2146 123 49 22 chrX 88831304 88831669 -88142471 + THE1C LTR MaLR 1 375 0 1328 227 67 36 chrX 88831669 88831712 -88142428 - MER4A-int LTR ERV1 -4418 1913 1845 275 48 0 24 chrX 88831751 88831793 -88142347 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1215 176 9 9 chrX 88831844 88832065 -88142075 + MER4B LTR ERV1 389 609 -1 2300 133 187 17 chrX 88832179 88832660 -88141480 - MER4A-int LTR ERV1 -6035 563 1 1904 133 3 24 chrX 88832662 88833015 -88141125 - MER4A LTR ERV1 0 664 261 462 180 10 40 chrX 88833015 88833115 -88141025 - MER4A LTR ERV1 -566 98 2 1760 254 27 20 chrX 88833197 88833787 -88140353 + L1 LINE L1 3841 4434 -1712 2289 188 50 18 chrX 88834003 88834568 -88139572 - L1MA4 LINE L1 -78 6222 5640 2178 214 24 52 chrX 88834579 88835426 -88138714 - L1MA4 LINE L1 -743 5403 4734 6639 166 8 11 chrX 88835433 88835790 -88138350 - L1PB1 LINE L1 -3 6148 5791 387 0 0 0 chrX 88835790 88835833 -88138307 + (TA)n Simple_repeat Simple_repeat 2 44 0 6639 166 8 11 chrX 88835833 88837814 -88136326 - L1PB1 LINE L1 -360 5791 3820 4005 234 9 4 chrX 88838022 88838990 -88135150 + L1MB5 LINE L1 3191 4163 -1983 1131 173 5 0 chrX 88838991 88839211 -88134929 - L1MA4 LINE L1 -1401 4745 4525 2284 155 6 6 chrX 88839308 88839669 -88134471 + THE1B LTR MaLR 4 364 0 2133 234 70 0 chrX 88839679 88840191 -88133949 + L1MB5 LINE L1 5581 6128 -46 231 160 40 0 chrX 88840217 88840267 -88133873 + L1MB5 LINE L1 6115 6166 -8 351 0 0 0 chrX 88842792 88842831 -88131309 + (CA)n Simple_repeat Simple_repeat 2 40 0 287 240 104 10 chrX 88843519 88843615 -88130525 + L1MCa LINE L1 3 107 -6319 3771 230 108 28 chrX 88843617 88843831 -88130309 + L1MCa LINE L1 84 279 -6147 488 45 15 0 chrX 88843831 88843897 -88130243 - L1PA7 LINE L1 -3 6151 6085 3771 230 108 28 chrX 88843897 88844778 -88129362 + L1MCa LINE L1 279 1088 -5338 2456 75 0 0 chrX 88844778 88845086 -88129054 + AluY SINE Alu 1 308 -3 3771 230 108 28 chrX 88845086 88845327 -88128813 + L1MCa LINE L1 1088 1308 -5118 183 42 0 0 chrX 88845327 88845351 -88128789 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3771 230 108 28 chrX 88845351 88847072 -88127068 + L1MCa LINE L1 1308 3380 -3046 * 6168 159 13 14 chrX 88847055 88848498 -88125642 + L1P4 LINE L1 4184 5619 -544 1109 189 12 150 chrX 88848533 88848940 -88125200 + L1MCa LINE L1 3873 4223 -2203 451 241 60 18 chrX 88848951 88849117 -88125023 + L1MCa LINE L1 4752 4924 -1502 1573 184 130 20 chrX 88849133 88849487 -88124653 - MSTA LTR MaLR -35 393 1 8761 128 20 83 chrX 88849487 88851172 -88122968 - MSTA-int LTR MaLR 0 1580 3 1189 179 132 32 chrX 88851174 88851515 -88122625 - THE1C LTR MaLR 0 375 1 5229 203 29 36 chrX 88851515 88852759 -88121381 - L1P LINE L1 -1248 4898 3664 9487 240 41 5 chrX 88852773 88856459 -88117681 + L1MB3 LINE L1 2245 6071 -112 1413 200 116 37 chrX 88856459 88856986 -88117154 + MLT2A2 LTR ERVL 1 554 0 528 124 9 38 chrX 88856986 88857091 -88117049 + L1MB3 LINE L1 6067 6168 -15 1456 270 83 24 chrX 88857146 88859661 -88114479 + L1ME3A LINE L1 2806 5482 -680 521 258 63 0 chrX 88859663 88859853 -88114287 - L1ME LINE L1 -448 5714 5513 878 206 52 52 chrX 88859890 88860138 -88114002 + L1ME3A LINE L1 5762 6009 -161 340 329 49 49 chrX 88860235 88860478 -88113662 + MIR SINE MIR 20 262 0 214 361 59 59 chrX 88860635 88860890 -88113250 - L2 LINE L2 -557 2757 2503 372 271 107 0 chrX 88863061 88863183 -88110957 - MER58B DNA MER1_type 0 341 207 13118 120 14 12 chrX 88863197 88866304 -88107836 - L1PA8 LINE L1 -2 6170 3047 2522 82 0 6 chrX 88866304 88866645 -88107495 - L1PA7 LINE L1 0 6154 5816 13118 120 14 12 chrX 88866645 88866931 -88107209 - L1PA8 LINE L1 -3125 3047 2763 282 255 0 0 chrX 88866939 88866990 -88107150 - MER58B DNA MER1_type -287 54 4 1994 176 36 28 chrX 88868645 88869193 -88104947 - MLT2A2 LTR ERVL 0 554 1 1268 122 5 0 chrX 88869271 88869460 -88104680 - HERVL LTR ERVL -4553 1101 912 1735 235 130 92 chrX 88869769 88870023 -88104117 - MLT1E2 LTR MaLR 0 626 383 3039 72 5 0 chrX 88870023 88870428 -88103712 - L1PA7 LINE L1 0 6154 5748 1735 235 130 92 chrX 88870428 88870803 -88103337 - MLT1E2 LTR MaLR -243 383 1 238 263 0 0 chrX 88870827 88870884 -88103256 - L2 LINE L2 0 3313 3257 580 343 57 16 chrX 88870943 88871188 -88102952 + MIR SINE MIR 1 255 -7 183 80 0 0 chrX 88871540 88871565 -88102575 + (CA)n Simple_repeat Simple_repeat 1 25 0 1018 241 46 28 chrX 88872918 88873252 -88100888 + MLT1I LTR MaLR 6 409 0 21 57 0 0 chrX 88874092 88874127 -88100013 + AT_rich Low_complexity Low_complexity 1 35 0 1736 15 0 0 chrX 88874629 88874825 -88099315 - L1P2 LINE L1 -381 5774 5579 1447 22 38 5 chrX 88874825 88874996 -88099144 + L1PA4 LINE L1 5964 6154 -1 410 0 0 20 chrX 88877145 88877196 -88096944 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chrX 88877211 88877234 -88096906 + AT_rich Low_complexity Low_complexity 1 23 0 296 283 87 11 chrX 88877714 88877806 -88096334 - MIR SINE MIR -133 129 31 411 56 0 0 chrX 88877877 88877931 -88096209 + L1PA3 LINE L1 6099 6152 -3 698 303 75 4 chrX 88878533 88878774 -88095366 - MIR SINE MIR -1 261 4 187 283 98 11 chrX 88879420 88879512 -88094628 - MIR SINE MIR -93 169 70 219 273 61 0 chrX 88879542 88879608 -88094532 - MIR SINE MIR -8 254 185 620 216 170 0 chrX 88880717 88880870 -88093270 + MER5A DNA MER1_type 9 187 -2 279 244 0 26 chrX 88880881 88880959 -88093181 - MER5B DNA MER1_type -1 177 102 396 0 0 0 chrX 88881017 88881061 -88093079 + (TA)n Simple_repeat Simple_repeat 2 45 0 309 26 0 0 chrX 88881928 88881966 -88092174 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 60 0 0 chrX 88882056 88882106 -88092034 + AT_rich Low_complexity Low_complexity 1 50 0 209 308 0 0 chrX 88883349 88883401 -88090739 + CT-rich Low_complexity Low_complexity 4 55 0 403 298 18 36 chrX 88883523 88883691 -88090449 + MIR SINE MIR 98 262 0 5519 195 10 39 chrX 88883963 88886117 -88088023 - L1PA15 LINE L1 0 6165 4058 23 33 0 0 chrX 88887084 88887114 -88087026 + AT_rich Low_complexity Low_complexity 1 30 0 1874 121 0 0 chrX 88888927 88889199 -88084941 - L1PA8 LINE L1 -1355 4791 4520 6730 57 23 10 chrX 88889199 88890577 -88083563 + L1PA8 LINE L1 4787 6172 0 2268 168 10 0 chrX 88891264 88891682 -88082458 - L1PA14 LINE L1 -909 5237 4816 5977 106 12 10 chrX 88891692 88892314 -88081826 + L1PA14 LINE L1 5254 5880 -281 3782 82 0 23 chrX 88892314 88892837 -88081303 - MER9 LTR ERVK 0 511 1 5977 106 12 10 chrX 88892837 88893120 -88081020 + L1PA14 LINE L1 5880 6161 0 305 134 134 0 chrX 88893126 88893193 -88080947 + MER34B LTR ERV1 407 482 -83 6239 126 25 5 chrX 88894178 88895075 -88079065 - L1PA8A LINE L1 -584 5547 4620 185 0 40 0 chrX 88895075 88895100 -88079040 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 6239 126 25 5 chrX 88895100 88895404 -88078736 - L1PA8A LINE L1 -1511 4620 4324 4001 70 47 14 chrX 88895404 88895957 -88078183 + L1PA8A LINE L1 5558 6131 0 22 70 0 0 chrX 88896199 88896242 -88077898 + AT_rich Low_complexity Low_complexity 1 43 0 222 208 0 0 chrX 88897975 88898028 -88076112 + (TG)n Simple_repeat Simple_repeat 2 54 0 242 320 123 16 chrX 88898209 88898331 -88075809 - MIR3 SINE MIR -12 196 62 956 291 43 46 chrX 88898455 88898826 -88075314 + L2 LINE L2 1484 1853 -1461 1132 157 12 13 chrX 88898835 88899040 -88075100 - MSTB LTR MaLR -5 421 243 1190 109 29 0 chrX 88899681 88899856 -88074284 + L1PA7 LINE L1 5974 6153 -1 191 301 0 55 chrX 88900136 88900209 -88073931 - L3 LINE CR1 -13 1564 1496 374 261 127 100 chrX 88900209 88900500 -88073640 - L3 LINE CR1 -214 1363 1065 24 0 0 0 chrX 88900832 88900856 -88073284 + AT_rich Low_complexity Low_complexity 1 24 0 1944 56 28 0 chrX 88901219 88901470 -88072670 + L1PA7 LINE L1 5893 6150 -4 25 31 0 0 chrX 88901519 88901551 -88072589 + AT_rich Low_complexity Low_complexity 1 32 0 2511 192 4 11 chrX 88904287 88904750 -88069390 + L1PA12 LINE L1 258 717 -6864 5921 115 6 1 chrX 88904751 88906329 -88067811 + L1PA12 LINE L1 4585 6168 0 21 71 0 0 chrX 88906369 88906411 -88067729 + AT_rich Low_complexity Low_complexity 1 42 0 234 310 0 0 chrX 88906465 88906536 -88067604 + (CATATA)n Simple_repeat Simple_repeat 6 76 0 29 0 0 0 chrX 88906721 88906750 -88067390 + AT_rich Low_complexity Low_complexity 1 29 0 659 187 0 9 chrX 88907202 88907309 -88066831 + Tigger3(Golem) DNA MER2_type 2 107 -2922 * 2888 131 81 6 chrX 88907301 88907924 -88066216 + Tigger3(Golem) DNA MER2_type 2278 3028 -1 2131 279 63 40 chrX 88908707 88909538 -88064602 - L2 LINE L2 -272 3041 2189 285 241 43 103 chrX 88910559 88910675 -88063465 - MIR3 SINE MIR -3 205 97 387 41 0 0 chrX 88911393 88911442 -88062698 + (TG)n Simple_repeat Simple_repeat 1 49 0 654 192 45 68 chrX 88913558 88913735 -88060405 + MIR SINE MIR 80 252 -10 357 276 168 65 chrX 88913743 88913975 -88060165 - MIR SINE MIR -1 261 6 180 111 0 0 chrX 88914374 88914401 -88059739 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 308 341 47 42 chrX 88914540 88914754 -88059386 - LTR67 LTR ERVL -341 216 2 276 30 0 0 chrX 88915007 88915040 -88059100 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 298 127 25 chrX 88917117 88917275 -88056865 - L2 LINE L2 0 3272 3099 249 183 33 0 chrX 88917608 88917668 -88056472 + (TA)n Simple_repeat Simple_repeat 2 63 0 231 36 0 0 chrX 88917669 88917697 -88056443 + (TG)n Simple_repeat Simple_repeat 2 29 0 1810 154 25 0 chrX 88919697 88920021 -88054119 + L1MA4A LINE L1 5966 6297 -6 339 275 42 52 chrX 88920126 88920319 -88053821 - LTR33 LTR ERVL 0 521 331 609 325 15 19 chrX 88920396 88920602 -88053538 - LTR33 LTR ERVL -306 215 11 293 278 135 38 chrX 88920638 88920771 -88053369 - MIR3 SINE MIR -29 179 34 510 350 6 6 chrX 88921105 88921268 -88052872 + MIR SINE MIR 13 175 -87 193 167 17 17 chrX 88922034 88922094 -88052046 + (TATG)n Simple_repeat Simple_repeat 4 63 0 386 267 70 116 chrX 88922362 88922707 -88051433 - L1MC4a LINE L1 -1959 5849 5521 255 173 0 0 chrX 88922795 88922847 -88051293 + (TG)n Simple_repeat Simple_repeat 2 53 0 330 292 20 55 chrX 88923592 88923794 -88050346 + L1ME4a LINE L1 5723 5917 -204 402 284 50 78 chrX 88924110 88924328 -88049812 + MIR SINE MIR 26 237 -25 802 276 42 6 chrX 88924328 88924575 -88049565 + MLT1J2 LTR MaLR 1 255 -191 591 269 86 0 chrX 88924554 88924729 -88049411 + MLT1J1 LTR MaLR 255 444 -2 * 473 337 23 0 chrX 88927327 88927502 -88046638 - LTR33 LTR ERVL 0 521 343 289 242 32 0 chrX 88927518 88927580 -88046560 + LTR33 LTR ERVL 153 216 -305 * 500 355 33 0 chrX 88927577 88927760 -88046380 - LTR33 LTR ERVL -330 191 3 1987 232 57 98 chrX 88928101 88928783 -88045357 - MLT1E3 LTR MaLR 0 624 1 1824 165 3 19 chrX 88929980 88930289 -88043851 + AluJo SINE Alu 1 304 -8 405 0 0 0 chrX 88930340 88930385 -88043755 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 522 279 72 68 chrX 88931644 88931686 -88042454 + MIR SINE MIR 40 80 -182 2451 161 14 18 chrX 88931686 88932120 -88042020 + MSTB1 LTR MaLR 1 432 0 522 279 72 68 chrX 88932120 88932299 -88041841 + MIR SINE MIR 80 262 0 1159 259 62 20 chrX 88933056 88933411 -88040729 - MLT1I LTR MaLR -39 370 1 2002 138 75 26 chrX 88933682 88934029 -88040111 - THE1B LTR MaLR 0 364 1 4703 97 18 5 chrX 88934029 88934687 -88039453 - THE1B-int LTR MaLR 0 1580 914 6538 234 73 45 chrX 88935807 88938384 -88035756 + L1M3e LINE L1 460 2976 -4520 28 0 0 0 chrX 88938395 88938423 -88035717 + AT_rich Low_complexity Low_complexity 1 28 0 1159 182 20 170 chrX 88940489 88940983 -88033157 + L1M3e LINE L1 2785 3527 -4039 12778 213 56 33 chrX 88940985 88945881 -88028259 + L1PA13 LINE L1 2 4267 -3317 3803 207 7 1 chrX 88945877 88946700 -88027440 - L1P5 LINE L1 -749 5397 4570 * 2948 87 7 5 chrX 88946695 88947119 -88027021 + L1P5 LINE L1 5368 5792 -359 * 338 266 0 32 chrX 88947120 88947214 -88026926 - L1MC4 LINE L1 -1340 6702 6612 2291 122 3 21 chrX 88947216 88947592 -88026548 + L1PB1 LINE L1 5782 6150 -1 13021 173 6 0 chrX 88947621 88948588 -88025552 + L1PA13 LINE L1 4252 5212 -2389 2094 112 21 0 chrX 88948588 88948875 -88025265 + AluSq SINE Alu 1 293 -20 13021 173 6 0 chrX 88948875 88951246 -88022894 + L1PA13 LINE L1 5212 7596 -5 446 250 128 13 chrX 88951556 88951712 -88022428 + MIR SINE MIR 59 232 -30 526 295 101 30 chrX 88951834 88952071 -88022069 + MIR SINE MIR 6 259 -3 5188 151 20 4 chrX 88952175 88953475 -88020665 - L1PA16 LINE L1 -6 6160 4848 542 259 0 9 chrX 88953772 88953888 -88020252 - LTR67 LTR ERVL -112 445 331 1955 134 10 7 chrX 88953912 88954202 -88019938 + AluSx SINE Alu 5 295 -17 7076 131 36 21 chrX 88955234 88956438 -88017702 + Tigger3b DNA MER2_type 1 1222 -9 22 35 0 0 chrX 88957604 88957633 -88016507 + AT_rich Low_complexity Low_complexity 1 29 0 666 289 67 10 chrX 88958931 88959139 -88015001 - MIR SINE MIR -33 229 10 262 289 0 13 chrX 88960283 88960359 -88013781 + MIR SINE MIR 175 249 -13 1142 208 0 0 chrX 88961733 88961949 -88012191 - AluSg/x SINE Alu -1 311 96 269 278 0 0 chrX 88961986 88962040 -88012100 - L2 LINE L2 -19 3253 3200 330 221 39 0 chrX 88962676 88962753 -88011387 - MER116 DNA Mariner 0 80 1 2393 82 3 16 chrX 88963407 88963722 -88010418 - AluSp SINE Alu 0 313 3 982 323 82 11 chrX 88964088 88964525 -88009615 - L3 LINE CR1 0 1577 1110 1573 230 25 15 chrX 88964637 88965041 -88009099 + L1ME2 LINE L1 5689 6096 -68 5053 138 1 12 chrX 88965220 88966043 -88008097 - L1PA16 LINE L1 -9 6157 5344 3804 217 11 13 chrX 88966035 88966938 -88007202 + L1PA16 LINE L1 4433 5333 -813 * 629 165 0 60 chrX 88968253 88968386 -88005754 + FLAM_C SINE Alu 2 126 -7 2362 184 8 2 chrX 88968407 88968804 -88005336 + MSTB LTR MaLR 1 399 -27 1895 101 0 4 chrX 88968804 88969062 -88005078 + THE1A LTR MaLR 1 257 -98 2162 94 103 8 chrX 88969062 88969429 -88004711 - LTR7 LTR ERV1 0 450 1 818 73 18 0 chrX 88969429 88969531 -88004609 + THE1A LTR MaLR 252 355 0 4480 170 44 6 chrX 88969563 88970364 -88003776 + MSTB-int LTR MaLR 1 831 -820 203 189 0 0 chrX 88971461 88971498 -88002642 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 421 360 75 21 chrX 88972864 88973234 -88000906 + L2 LINE L2 2695 3083 -189 565 333 38 6 chrX 88973688 88973871 -88000269 + MIR SINE MIR 4 192 -70 270 0 0 0 chrX 88974570 88974600 -87999540 + (CA)n Simple_repeat Simple_repeat 1 30 0 7634 26 0 2 chrX 88977085 88978555 -87995585 + L1PA3 LINE L1 4685 6155 0 292 69 0 86 chrX 88978563 88978621 -87995519 + L1P5 LINE L1 5385 5437 -717 9383 161 32 13 chrX 88978633 88980317 -87993823 + L1MB1 LINE L1 1274 2989 -4576 6486 171 22 23 chrX 88980737 88981742 -87992398 - L1P LINE L1 -1464 4682 3677 338 0 0 23 chrX 88981742 88981785 -87992355 + (TTG)n Simple_repeat Simple_repeat 3 44 0 6486 171 22 23 chrX 88981785 88982076 -87992064 - L1P LINE L1 -2469 3677 3387 4424 245 15 19 chrX 88982109 88983131 -87991009 + L1MA1 LINE L1 168 1185 -6380 2375 121 22 11 chrX 88983131 88983502 -87990638 + THE1C LTR MaLR 1 375 0 9564 120 26 37 chrX 88983502 88985042 -87989098 + THE1C-int LTR MaLR 1 1523 -57 14577 83 8 1 chrX 88985193 88987471 -87986669 + L1P3 LINE L1 3352 5644 -528 1011 158 171 74 chrX 88987584 88987882 -87986258 + THE1C LTR MaLR 1 327 -48 529 133 0 11 chrX 88987885 88987975 -87986165 + THE1C-int LTR MaLR 1492 1580 0 2122 154 19 8 chrX 88987975 88988346 -87985794 + THE1C LTR MaLR 1 375 0 14077 174 21 12 chrX 88988346 88994724 -87979416 + L1MA1 LINE L1 1181 7615 -106 7441 202 26 39 chrX 88994728 88997578 -87976562 + L1MB1 LINE L1 4772 7587 0 508 313 82 53 chrX 88997690 88998176 -87975964 + L1 LINE L1 2721 3220 -2926 381 208 8 24 chrX 88998191 88998316 -87975824 + GA-rich Low_complexity Low_complexity 3 125 0 19744 176 24 10 chrX 88998649 89004494 -87969646 - L1MA1 LINE L1 0 7721 1729 279 0 0 0 chrX 89004494 89004525 -87969615 + (TC)n Simple_repeat Simple_repeat 2 32 0 19744 176 24 10 chrX 89004525 89006268 -87967872 - L1MA1 LINE L1 -5992 1729 13 2090 179 60 5 chrX 89006311 89006713 -87967427 - MSTA LTR MaLR -4 424 1 8786 197 12 2 chrX 89006727 89008348 -87965792 - MSTA-int LTR MaLR -15 1636 1 1773 206 103 0 chrX 89008348 89008736 -87965404 - MSTA LTR MaLR 0 428 1 208 200 0 0 chrX 89011463 89011503 -87962637 - L2 LINE L2 0 3313 3274 4514 196 29 11 chrX 89012035 89013506 -87960634 - L1MB2 LINE L1 -13 6158 4655 28 0 0 0 chrX 89013543 89013571 -87960569 + AT_rich Low_complexity Low_complexity 1 28 0 419 260 29 46 chrX 89013944 89014117 -87960023 - HAL1 LINE L1 -4 2503 2334 21 0 0 0 chrX 89014193 89014214 -87959926 + AT_rich Low_complexity Low_complexity 1 21 0 8677 211 26 13 chrX 89014214 89016628 -87957512 - L1PA16 LINE L1 -12 6857 4474 209 32 0 32 chrX 89016628 89016659 -87957481 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 8677 211 26 13 chrX 89016659 89018636 -87955504 - L1PA16 LINE L1 -2395 4474 2393 2435 143 0 3 chrX 89018636 89019001 -87955139 - THE1B LTR MaLR 0 364 1 8677 211 26 13 chrX 89019001 89019538 -87954602 - L1PA16 LINE L1 -4476 2393 1864 5341 138 38 28 chrX 89019546 89019670 -87954470 - L1PB2 LINE L1 -1 6150 6029 2275 88 0 39 chrX 89019670 89019978 -87954162 - AluSg SINE Alu -13 297 2 5341 138 38 28 chrX 89019978 89020161 -87953979 - L1PB2 LINE L1 -122 6029 5849 7266 101 8 23 chrX 89020161 89021248 -87952892 + MER11C LTR ERVK 1 1071 0 5341 138 38 28 chrX 89021248 89021955 -87952185 - L1PB2 LINE L1 -302 5849 5120 183 42 0 0 chrX 89021955 89021979 -87952161 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 5341 138 38 28 chrX 89021979 89022213 -87951927 - L1PB2 LINE L1 -1031 5120 4890 * 6783 204 14 13 chrX 89022188 89024364 -87949776 - L1PA16 LINE L1 -5001 1848 1 266 302 52 0 chrX 89024367 89024483 -87949657 - HAL1 LINE L1 -166 2341 2220 22 0 0 0 chrX 89024575 89024597 -87949543 + AT_rich Low_complexity Low_complexity 1 22 0 1204 274 56 29 chrX 89024655 89025205 -87948935 - HAL1 LINE L1 -441 2066 1502 * 1486 292 129 41 chrX 89025204 89026207 -87947933 - HAL1 LINE L1 -1378 1129 39 21 0 0 0 chrX 89026894 89026915 -87947225 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chrX 89028125 89028190 -87945950 + AT_rich Low_complexity Low_complexity 1 65 0 27 62 0 0 chrX 89028277 89028325 -87945815 + AT_rich Low_complexity Low_complexity 1 48 0 673 297 65 45 chrX 89028375 89029002 -87945138 + L1ME4a LINE L1 5480 6119 -2 322 190 190 0 chrX 89029420 89029520 -87944620 - MER112 DNA MER1_type -83 177 59 1281 129 5 0 chrX 89029580 89029797 -87944343 + L1MA5 LINE L1 6083 6300 0 2346 97 0 3 chrX 89030624 89030934 -87943206 + AluSp SINE Alu 3 311 -2 308 331 0 53 chrX 89031011 89031144 -87942996 + MIR SINE MIR 76 201 -61 21 36 0 0 chrX 89031157 89031185 -87942955 + AT_rich Low_complexity Low_complexity 1 28 0 1482 288 24 46 chrX 89031650 89032109 -87942031 - MLT1H1 LTR MaLR 0 555 107 40605 45 1 1 chrX 89032384 89038172 -87935968 + L1PA5 LINE L1 361 6147 -7 22 35 0 0 chrX 89038178 89038207 -87935933 + AT_rich Low_complexity Low_complexity 1 29 0 376 340 58 21 chrX 89038304 89038495 -87935645 - MIR SINE MIR -54 208 11 214 319 52 52 chrX 89040279 89040395 -87933745 + L2 LINE L2 3149 3264 -8 23 86 0 0 chrX 89040395 89040453 -87933687 + AT_rich Low_complexity Low_complexity 1 58 0 232 146 0 0 chrX 89041050 89041098 -87933042 + L1PBa LINE L1 2695 2742 -4121 3753 55 2 2 chrX 89041157 89041628 -87932512 - L1PA7 LINE L1 -8 6146 5676 15282 168 54 54 chrX 89041837 89042926 -87931214 + L1M1 LINE L1 13 1101 -6464 2441 74 3 0 chrX 89042926 89043223 -87930917 - AluY SINE Alu -13 298 1 15282 168 54 54 chrX 89043223 89043343 -87930797 + L1M1 LINE L1 1101 1220 -6345 6626 25 0 4 chrX 89043343 89044126 -87930014 + L1PA3 LINE L1 5376 6155 0 15282 168 54 54 chrX 89044126 89046133 -87928007 + L1M1 LINE L1 1219 3230 -4335 5024 235 64 3 chrX 89046147 89047849 -87926291 + L1PA13 LINE L1 1 1934 -4853 386 264 0 0 chrX 89047843 89047949 -87926191 + L1M1 LINE L1 3863 3968 -3597 * 6159 142 24 12 chrX 89047945 89049232 -87924908 + L1MA2 LINE L1 4985 6286 -18 957 232 80 10 chrX 89049485 89049787 -87924353 - MER5C DNA MER1_type 0 324 2 314 258 0 0 chrX 89050123 89050189 -87923951 - L2 LINE L2 -1 3271 3206 2025 126 0 7 chrX 89050320 89050638 -87923502 + AluSx SINE Alu 1 316 0 665 317 89 19 chrX 89050695 89051023 -87923117 + L1MC4a LINE L1 5419 5723 -2085 234 0 0 0 chrX 89051023 89051049 -87923091 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 246 32 0 0 chrX 89051048 89051079 -87923061 + (GA)n Simple_repeat Simple_repeat 2 32 0 665 317 89 19 chrX 89051049 89051211 -87922929 + L1MC4a LINE L1 5723 5911 -1897 1086 8 0 0 chrX 89052842 89052965 -87921175 + AluYa5/8 SINE Alu 187 309 -2 366 61 0 0 chrX 89053104 89053153 -87920987 + (CA)n Simple_repeat Simple_repeat 2 50 0 26 0 0 0 chrX 89053964 89053990 -87920150 + AT_rich Low_complexity Low_complexity 1 26 0 214 25 125 0 chrX 89054187 89054227 -87919913 + T-rich Low_complexity Low_complexity 1 45 0 11661 187 11 5 chrX 89054227 89055973 -87918167 - L1PB1 LINE L1 -1 6866 5090 261 0 0 0 chrX 89055973 89056002 -87918138 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 11661 187 11 5 chrX 89056002 89057696 -87916444 - L1PB1 LINE L1 -1777 5090 3408 7260 186 24 7 chrX 89057696 89059928 -87914212 + L1PA13 LINE L1 3895 6159 -4 3330 196 13 14 chrX 89059938 89061079 -87913061 + L1M1 LINE L1 3217 4360 -3205 * 8694 186 63 5 chrX 89061060 89064204 -87909936 - L1PB1 LINE L1 -3386 3476 6 2714 288 51 25 chrX 89064638 89064813 -87909327 + L1MEc LINE L1 70 239 -5976 2137 122 54 23 chrX 89064813 89065166 -87908974 + THE1B LTR MaLR 1 364 0 2714 288 51 25 chrX 89065166 89065285 -87908855 + L1MEc LINE L1 239 353 -5862 216 0 0 0 chrX 89065285 89065309 -87908831 + (GA)n Simple_repeat Simple_repeat 2 25 0 2714 288 51 25 chrX 89065309 89066310 -87907830 + L1MEc LINE L1 353 1362 -4853 2182 249 126 31 chrX 89066311 89066626 -87907514 + L1M1 LINE L1 2859 3143 -4422 1540 201 16 43 chrX 89066626 89066999 -87907141 + MLT1A1 LTR MaLR 3 365 0 2182 249 126 31 chrX 89066999 89067420 -87906720 + L1M1 LINE L1 3143 3523 -4042 13304 49 6 2 chrX 89067420 89069863 -87904277 + L1PA5 LINE L1 3693 6148 -6 2182 249 126 31 chrX 89069863 89070572 -87903568 + L1M1 LINE L1 3523 4451 -3114 758 305 26 4 chrX 89070570 89070893 -87903247 + L1ME1 LINE L1 5766 6099 -79 * 307 393 40 24 chrX 89070986 89071238 -87902902 - MIR SINE MIR 0 262 7 2333 31 42 10 chrX 89072480 89072769 -87901371 + AluY SINE Alu 2 299 -12 3613 136 11 14 chrX 89072839 89073406 -87900734 - MER7C DNA MER2_type 0 602 38 21 57 0 0 chrX 89074300 89074335 -87899805 + AT_rich Low_complexity Low_complexity 1 35 0 967 86 29 0 chrX 89074383 89074523 -87899617 + L1MA3 LINE L1 6162 6305 0 279 0 0 0 chrX 89075369 89075400 -87898740 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chrX 89076282 89076312 -87897828 + AT_rich Low_complexity Low_complexity 1 30 0 351 252 106 19 chrX 89076633 89076759 -87897381 + L1ME LINE L1 5654 5792 -378 973 134 13 0 chrX 89076761 89076910 -87897230 + MSTA LTR MaLR 1 151 -277 183 129 0 0 chrX 89076947 89076978 -87897162 + (TA)n Simple_repeat Simple_repeat 2 32 0 5370 141 30 19 chrX 89077132 89078088 -87896052 + L1MA5 LINE L1 5333 6299 -1 21 0 0 0 chrX 89078450 89078471 -87895669 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chrX 89078968 89079013 -87895127 + AT_rich Low_complexity Low_complexity 1 45 0 430 284 96 36 chrX 89079055 89079358 -87894782 + MLT1I LTR MaLR 70 390 -19 702 262 56 75 chrX 89079437 89080313 -87893827 - L1MEd LINE L1 -741 1749 783 1455 174 0 0 chrX 89080368 89080615 -87893525 - L1PB4 LINE L1 -1 6155 5909 318 380 17 6 chrX 89080682 89080861 -87893279 - L1MEd LINE L1 -5934 185 5 1341 301 108 35 chrX 89080875 89082598 -87891542 - L1MEc LINE L1 -2306 3909 2102 664 299 106 53 chrX 89082774 89083636 -87890504 - L1MEc LINE L1 -4971 1234 328 1725 300 49 19 chrX 89085780 89086314 -87887826 - MLT1E LTR MaLR -14 579 30 849 287 74 45 chrX 89087356 89088046 -87886094 + L1M4 LINE L1 3438 4147 -1999 226 242 32 16 chrX 89088060 89088122 -87886018 + L1MA2 LINE L1 9 71 -7494 10666 213 48 6 chrX 89088137 89090231 -87883909 + L1MA2 LINE L1 157 2338 -5227 7773 31 3 1 chrX 89090223 89091186 -87882954 - L1P LINE L1 -2341 3805 2841 * 8444 24 0 0 chrX 89091186 89092951 -87881189 + L1PA3 LINE L1 4391 6155 0 13268 161 50 23 chrX 89092994 89093526 -87880614 + L1MA2 LINE L1 2319 2835 -4888 2725 103 0 5 chrX 89093526 89093903 -87880237 + THE1C LTR MaLR 1 375 0 9650 120 32 46 chrX 89093903 89095505 -87878635 + THE1C-int LTR MaLR 1 1580 0 2770 98 0 3 chrX 89095505 89095881 -87878259 + THE1C LTR MaLR 1 375 0 13268 161 50 23 chrX 89095881 89100607 -87873533 + L1MA2 LINE L1 2834 7719 -4 28 48 0 0 chrX 89100627 89100669 -87873471 + AT_rich Low_complexity Low_complexity 1 42 0 419 269 149 33 chrX 89100677 89101219 -87872921 + L1M4 LINE L1 4165 4769 -1377 499 192 10 0 chrX 89101395 89101499 -87872641 + L1MD1 LINE L1 6125 6229 -13 361 250 14 21 chrX 89101690 89101834 -87872306 + L1M4 LINE L1 4917 5059 -1087 24 32 0 0 chrX 89101863 89101894 -87872246 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chrX 89101939 89101980 -87872160 + AT_rich Low_complexity Low_complexity 1 41 0 4466 111 0 5 chrX 89102120 89102770 -87871370 - L1PA11 LINE L1 0 6174 5528 29 28 0 0 chrX 89103011 89103047 -87871093 + AT_rich Low_complexity Low_complexity 1 36 0 7025 105 5 0 chrX 89104101 89105913 -87868227 + L1PA7 LINE L1 4342 6154 0 31 0 0 0 chrX 89106099 89106130 -87868010 + AT_rich Low_complexity Low_complexity 1 31 0 22991 185 26 19 chrX 89107127 89113465 -87860675 + L1PA10 LINE L1 10 6477 -6 315 0 0 0 chrX 89114642 89114677 -87859463 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2741 253 34 34 chrX 89115222 89115510 -87858630 + L1M4 LINE L1 3035 3322 -2824 2057 139 10 0 chrX 89115510 89115819 -87858321 + AluSx SINE Alu 1 312 0 2741 253 34 34 chrX 89115819 89116350 -87857790 + L1M4 LINE L1 3322 3857 -2289 930 189 59 145 chrX 89116350 89116757 -87857383 - MLT1A2 LTR MaLR 0 374 3 2741 253 34 34 chrX 89116757 89116990 -87857150 + L1M4 LINE L1 3856 4088 -2058 2008 175 16 44 chrX 89116990 89117565 -87856575 + L1MA8 LINE L1 5749 6290 -22 1441 232 34 3 chrX 89117579 89117963 -87856177 + L1M4 LINE L1 4076 4471 -1675 1299 296 51 65 chrX 89118155 89118976 -87855164 - L2 LINE L2 -1 3312 2484 2241 169 23 29 chrX 89118976 89119454 -87854686 + L1PB1 LINE L1 3613 4087 -2059 1076 101 42 65 chrX 89119454 89119671 -87854469 + L1MB8 LINE L1 5934 6145 -33 4576 171 16 10 chrX 89119671 89119716 -87854424 + L1MA10 LINE L1 5444 5487 -847 462 36 0 0 chrX 89119716 89119772 -87854368 + (GA)n Simple_repeat Simple_repeat 2 57 0 4576 171 16 10 chrX 89119772 89120611 -87853529 + L1MA10 LINE L1 5487 6333 -1 203 269 19 0 chrX 89120612 89120664 -87853476 - L2 LINE L2 -841 2473 2421 247 320 10 48 chrX 89121558 89121661 -87852479 - MIR SINE MIR -64 144 46 8020 128 7 27 chrX 89122410 89123121 -87851019 - HSMAR2 DNA Mariner -3 1299 626 2576 44 0 25 chrX 89123121 89123437 -87850703 - AluY SINE Alu -3 308 1 8020 128 7 27 chrX 89123437 89124049 -87850091 - HSMAR2 DNA Mariner -676 626 3 2661 137 76 8 chrX 89126559 89127033 -87847107 + MER84 LTR ERV1 2 507 0 1926 122 36 4 chrX 89127264 89127542 -87846598 - AluSx SINE Alu -25 287 1 256 297 11 33 chrX 89127557 89127648 -87846492 + L2 LINE L2 3184 3272 0 741 127 0 0 chrX 89127814 89127924 -87846216 - LTR8 LTR ERV1 0 691 582 4198 195 61 23 chrX 89127975 89129050 -87845090 - L1PBa LINE L1 -5700 1163 6 5174 167 7 4 chrX 89129059 89130638 -87843502 + L1PB1 LINE L1 4201 5784 -367 238 130 0 0 chrX 89130638 89130684 -87843456 + LTR66 LTR ERVL 394 439 -171 468 208 0 0 chrX 89130686 89130787 -87843353 + (CATA)n Simple_repeat Simple_repeat 2 102 0 2294 123 0 39 chrX 89130787 89131168 -87842972 + L1PB1 LINE L1 5782 6147 -4 4367 79 31 12 chrX 89131193 89131798 -87842342 - LTR8 LTR ERV1 -74 617 1 251 341 39 50 chrX 89132634 89132892 -87841248 + MIR SINE MIR 8 262 0 216 182 0 0 chrX 89132892 89132936 -87841204 + (CTA)n Simple_repeat Simple_repeat 3 46 0 2175 176 45 33 chrX 89133140 89133565 -87840575 - MSTB1 LTR MaLR 0 432 3 317 295 128 60 chrX 89134543 89134777 -87839363 - MIR SINE MIR -10 252 3 213 274 0 0 chrX 89135397 89135448 -87838692 + L2 LINE L2 3251 3301 -12 380 303 34 45 chrX 89140722 89140900 -87833240 + MIR SINE MIR 46 221 -41 24 0 0 0 chrX 89142150 89142174 -87831966 + AT_rich Low_complexity Low_complexity 1 24 0 210 37 0 0 chrX 89142250 89142277 -87831863 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2292 96 0 0 chrX 89142280 89142571 -87831569 - AluSq SINE Alu -22 291 1 2268 87 3 0 chrX 89143098 89143384 -87830756 - AluSg SINE Alu -23 287 1 439 305 38 8 chrX 89144344 89144475 -87829665 - MIR SINE MIR -57 151 17 2147 173 19 131 chrX 89144619 89145161 -87828979 + MLT2B3 LTR ERVL 1 466 -88 396 0 0 0 chrX 89145161 89145205 -87828935 + (CA)n Simple_repeat Simple_repeat 1 44 0 2147 173 19 131 chrX 89145205 89145286 -87828854 + MLT2B3 LTR ERVL 466 554 0 434 287 66 17 chrX 89145313 89145471 -87828669 + MIR3 SINE MIR 2 167 -41 409 298 77 82 chrX 89145808 89146248 -87827892 - MLT1K LTR MaLR 0 588 151 379 311 60 30 chrX 89146507 89147037 -87827103 - L1M4 LINE L1 -743 5403 4858 744 278 71 23 chrX 89147826 89148213 -87825927 + L1ME4a LINE L1 5224 5634 -487 1820 230 59 36 chrX 89148213 89148555 -87825585 + LTR40a LTR ERVL 3 361 -158 234 91 0 0 chrX 89148555 89148588 -87825552 + (CA)n Simple_repeat Simple_repeat 2 34 0 1820 230 59 36 chrX 89148588 89148740 -87825400 + LTR40a LTR ERVL 361 508 -11 357 294 62 30 chrX 89148799 89149075 -87825065 + L1ME4a LINE L1 5676 5972 -149 336 24 0 0 chrX 89149075 89149116 -87825024 + (CA)n Simple_repeat Simple_repeat 1 41 0 357 294 62 30 chrX 89149116 89149271 -87824869 + L1ME4a LINE L1 5972 6121 0 21 0 0 0 chrX 89149690 89149711 -87824429 + AT_rich Low_complexity Low_complexity 1 21 0 223 401 37 16 chrX 89149883 89150070 -87824070 + L2 LINE L2 2892 3082 -190 192 377 151 9 chrX 89150102 89150208 -87823932 - L2 LINE L2 -1 3271 3151 271 361 49 8 chrX 89150248 89150370 -87823770 + L2 LINE L2 3137 3263 -9 252 0 0 0 chrX 89150683 89150711 -87823429 + (TG)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chrX 89150710 89150734 -87823406 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 225 171 0 0 chrX 89151283 89151324 -87822816 + CT-rich Low_complexity Low_complexity 1 41 0 225 0 0 0 chrX 89151325 89151350 -87822790 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chrX 89151436 89151472 -87822668 + AT_rich Low_complexity Low_complexity 1 36 0 1979 122 3 3 chrX 89152788 89153075 -87821065 - AluSx SINE Alu -25 287 1 1221 244 72 28 chrX 89153099 89153600 -87820540 - L1ME4a LINE L1 -16 6105 5583 10207 92 0 1 chrX 89153601 89155797 -87818343 + L1PA7 LINE L1 3948 6143 -11 272 27 27 0 chrX 89155799 89155836 -87818304 + (TAGA)n Simple_repeat Simple_repeat 2 39 0 488 267 17 9 chrX 89157825 89157941 -87816199 - L2 LINE L2 -4 3309 3193 553 331 147 29 chrX 89158263 89158604 -87815536 - L2 LINE L2 -21 3251 2871 188 309 41 89 chrX 89158660 89158783 -87815357 - L2 LINE L2 -564 2750 2634 372 302 124 0 chrX 89159094 89159223 -87814917 - L2 LINE L2 -44 3269 3125 882 277 22 38 chrX 89159288 89159606 -87814534 + MER83C LTR ERV1 49 361 -12 482 343 61 39 chrX 89159637 89160017 -87814123 - L2 LINE L2 -185 3128 2749 280 356 43 0 chrX 89161160 89161275 -87812865 - MIR SINE MIR -131 131 12 5438 179 36 48 chrX 89161552 89163141 -87810999 - L1PBa LINE L1 -2694 4168 2607 2060 114 13 0 chrX 89163144 89163451 -87810689 + L1PB2 LINE L1 5836 6146 -5 2162 181 42 43 chrX 89163762 89164291 -87809849 - LTR55 LTR ERV -11 537 10 2275 143 37 30 chrX 89164615 89165020 -87809120 + Tigger2a DNA MER2_type 1 408 -26 22 0 0 0 chrX 89165076 89165098 -87809042 + AT_rich Low_complexity Low_complexity 1 22 0 1347 54 0 0 chrX 89167140 89167307 -87806833 - L1P2 LINE L1 -426 5729 5563 1174 53 0 0 chrX 89167307 89167454 -87806686 + L1PA4 LINE L1 6004 6154 -1 752 231 151 68 chrX 89167471 89167808 -87806332 + MLT1A1 LTR MaLR 1 365 0 1840 91 0 0 chrX 89168291 89168532 -87805608 + AluSx SINE Alu 62 302 -10 300 302 23 0 chrX 89168774 89168903 -87805237 + L1ME LINE L1 5731 5862 -259 23 33 0 0 chrX 89169089 89169119 -87805021 + AT_rich Low_complexity Low_complexity 1 30 0 398 173 0 12 chrX 89169425 89169506 -87804634 - L1P LINE L1 -1516 4630 4551 * 4768 48 0 13 chrX 89169454 89170069 -87804071 + L1PA7 LINE L1 5538 6143 -11 217 357 31 31 chrX 89170389 89170585 -87803555 + L2 LINE L2 1053 1248 -2066 513 263 136 18 chrX 89172066 89172294 -87801846 - L2 LINE L2 0 3313 3059 243 0 0 0 chrX 89174243 89174270 -87799870 + (A)n Simple_repeat Simple_repeat 1 27 0 3782 59 6 8 chrX 89175956 89176026 -87798114 - L1PA7 LINE L1 -2 6152 6083 1519 112 0 0 chrX 89176026 89176241 -87797899 - AluSc SINE Alu 0 309 95 3782 59 6 8 chrX 89176241 89176675 -87797465 - L1PA7 LINE L1 -71 6083 5649 253 316 38 15 chrX 89177276 89177409 -87796731 + L2 LINE L2 2211 2346 -968 203 353 79 14 chrX 89177966 89178105 -87796035 + L2 LINE L2 2457 2604 -710 516 238 37 24 chrX 89178141 89178305 -87795835 - L1ME4a LINE L1 0 6121 5956 519 143 18 9 chrX 89178327 89178439 -87795701 + CT-rich Low_complexity Low_complexity 1 113 0 698 291 113 41 chrX 89178450 89178770 -87795370 - L2 LINE L2 -14 3299 2957 460 266 19 38 chrX 89179147 89179305 -87794835 + MLT1I LTR MaLR 240 394 -15 828 231 11 11 chrX 89179305 89179491 -87794649 - MER5A DNA MER1_type -1 188 3 369 292 62 96 chrX 89179525 89179912 -87794228 - L1M4 LINE L1 -1216 4930 4557 209 330 55 46 chrX 89179927 89180036 -87794104 + L2 LINE L2 2535 2644 -670 555 269 44 51 chrX 89180693 89181042 -87793098 - MLT1J2 LTR MaLR 0 450 69 495 244 16 8 chrX 89181924 89182047 -87792093 - MER94 DNA DNA -10 124 1 26 30 0 0 chrX 89182778 89182811 -87791329 + AT_rich Low_complexity Low_complexity 1 33 0 191 35 0 35 chrX 89182871 89182900 -87791240 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 231 36 0 0 chrX 89183779 89183807 -87790333 + (CA)n Simple_repeat Simple_repeat 1 28 0 357 256 215 7 chrX 89184358 89184501 -87789639 + MIR SINE MIR 38 204 -58 282 286 133 46 chrX 89184921 89185117 -87789023 - MLT1I LTR MaLR -244 165 43 1136 218 0 0 chrX 89186126 89186323 -87787817 - MER8 DNA MER2_type 0 239 43 3246 176 16 5 chrX 89186549 89187178 -87786962 - L1MB3 LINE L1 -3 6180 5545 195 42 0 0 chrX 89187557 89187581 -87786559 + (CA)n Simple_repeat Simple_repeat 2 25 0 2018 98 25 4 chrX 89187771 89188045 -87786095 - AluSq SINE Alu -13 300 21 320 206 0 0 chrX 89188648 89188716 -87785424 + LTR67 LTR ERVL 488 555 -2 26 30 0 0 chrX 89189379 89189412 -87784728 + AT_rich Low_complexity Low_complexity 1 33 0 725 284 82 10 chrX 89189570 89189778 -87784362 + MIR SINE MIR 27 249 -13 3519 49 2 7 chrX 89191254 89191705 -87782435 + L1PA4 LINE L1 5706 6154 -1 248 341 121 23 chrX 89191720 89191893 -87782247 + MIR SINE MIR 46 235 -27 216 330 33 22 chrX 89191879 89191970 -87782170 - MIR SINE MIR -169 93 2 * 323 286 143 0 chrX 89192105 89192238 -87781902 - MIR SINE MIR -21 241 90 235 158 0 0 chrX 89192242 89192280 -87781860 - U2 snRNA snRNA -150 38 1 2295 89 3 19 chrX 89192434 89192749 -87781391 - AluSp SINE Alu -1 312 3 242 106 0 0 chrX 89193022 89193069 -87781071 - L1MA1 LINE L1 -3 6299 6253 * 21874 155 25 21 chrX 89193050 89196475 -87777665 - L1 LINE L1 -2423 5142 1686 453 19 0 0 chrX 89196475 89196529 -87777611 + (TG)n Simple_repeat Simple_repeat 1 54 0 21874 155 25 21 chrX 89196529 89198198 -87775942 - L1 LINE L1 -5879 1686 25 669 259 124 25 chrX 89198254 89198536 -87775604 + L2 LINE L2 3004 3313 0 787 323 60 30 chrX 89199201 89199600 -87774540 + MLT1J LTR MaLR 99 509 -2 2061 152 22 50 chrX 89199628 89200029 -87774111 - MLT1B LTR MaLR 0 390 1 693 233 69 35 chrX 89200554 89200756 -87773384 - MER63A DNA MER1_type -1 209 1 406 269 195 0 chrX 89201551 89201700 -87772440 - MIR SINE MIR -26 236 59 387 319 53 48 chrX 89201786 89201977 -87772163 - MIR SINE MIR -59 203 8 607 283 55 40 chrX 89202301 89202573 -87771567 - L2 LINE L2 -19 3294 3019 208 200 73 0 chrX 89202739 89202794 -87771346 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 2167 146 73 10 chrX 89203296 89203708 -87770432 + L1PA16 LINE L1 5727 6164 -2 216 0 0 0 chrX 89204768 89204792 -87769348 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 248 196 143 0 chrX 89204821 89204877 -87769263 + MER5C DNA MER1_type 52 115 -209 22 56 0 0 chrX 89205171 89205207 -87768933 + AT_rich Low_complexity Low_complexity 1 36 0 253 215 13 38 chrX 89205901 89205980 -87768160 + GA-rich Low_complexity Low_complexity 5 81 0 2351 80 0 0 chrX 89206314 89206615 -87767525 + AluSg SINE Alu 1 301 -9 1062 140 0 0 chrX 89206615 89206804 -87767336 + AluSc SINE Alu 132 320 0 251 242 75 0 chrX 89207259 89207338 -87766802 + MIR SINE MIR 34 116 -92 499 368 65 23 chrX 89207498 89207884 -87766256 + L2 LINE L2 2460 2861 -453 412 330 76 49 chrX 89207933 89208197 -87765943 + L2 LINE L2 3016 3286 -27 349 285 53 53 chrX 89208188 89208339 -87765801 + MIR SINE MIR 26 176 -86 * 276 309 12 48 chrX 89209023 89209107 -87765033 + L2 LINE L2 3190 3270 -2 232 273 23 11 chrX 89209795 89209883 -87764257 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 2246 154 18 3 chrX 89211241 89211625 -87762515 - MLT1B LTR MaLR 0 390 1 210 71 0 0 chrX 89213670 89213698 -87760442 + (A)n Simple_repeat Simple_repeat 1 28 0 803 333 19 8 chrX 89214354 89214612 -87759528 - MIR SINE MIR -1 261 1 2185 107 7 3 chrX 89215224 89215534 -87758606 + AluSq SINE Alu 1 311 -2 512 147 0 11 chrX 89215534 89215629 -87758511 + (GGAAA)n Simple_repeat Simple_repeat 2 95 0 344 335 27 21 chrX 89216026 89216214 -87757926 + L2 LINE L2 2719 2907 -407 271 345 26 0 chrX 89216271 89216387 -87757753 + L2 LINE L2 2577 2695 -619 197 309 12 103 chrX 89216434 89216599 -87757541 + L2 LINE L2 2702 2851 -463 23 0 0 0 chrX 89216958 89216981 -87757159 + AT_rich Low_complexity Low_complexity 1 23 0 246 365 43 26 chrX 89218128 89218243 -87755897 - L2 LINE L2 0 3313 3197 358 312 39 28 chrX 89219259 89219439 -87754701 + MIR SINE MIR 36 216 -46 201 233 0 0 chrX 89219587 89219630 -87754510 + (CA)n Simple_repeat Simple_repeat 2 44 0 730 272 50 20 chrX 89221392 89221593 -87752547 + LTR16B LTR ERVL 17 223 -241 2731 189 36 4 chrX 89221593 89222090 -87752050 + MER54B LTR ERVL 1 513 -280 1960 150 3 3 chrX 89222090 89222417 -87751723 - L1M2 LINE L1 -520 5780 5454 450 137 0 7 chrX 89222932 89223023 -87751117 - L1M2 LINE L1 -727 5439 5355 297 284 91 40 chrX 89223074 89223370 -87750770 - L1MEc LINE L1 -4852 1544 1234 647 270 36 36 chrX 89224047 89224243 -87749897 - MLT1H LTR MaLR -282 267 72 528 248 37 50 chrX 89224317 89224535 -87749605 - LTR16B LTR ERVL -3 461 247 3340 307 37 28 chrX 89224538 89226085 -87748055 - HERV16 LTR ERVL -3251 1745 125 691 241 79 19 chrX 89226178 89226394 -87747746 - LTR16B LTR ERVL -2 462 234 1827 127 22 4 chrX 89226408 89226676 -87747464 - MER54B LTR ERVL 0 793 521 14471 136 35 8 chrX 89226682 89228222 -87745918 + Tigger1 DNA MER2_type 7 1636 -782 2120 83 69 0 chrX 89228222 89228499 -87745641 + AluSq SINE Alu 1 296 -17 14471 136 35 8 chrX 89228499 89229302 -87744838 + Tigger1 DNA MER2_type 1636 2415 -3 2730 130 14 62 chrX 89229303 89229863 -87744277 + L1MA9 LINE L1 5779 6311 -1 208 353 30 42 chrX 89230029 89230196 -87743944 - L2 LINE L2 -410 2904 2740 663 346 4 13 chrX 89230380 89230614 -87743526 - L3 LINE CR1 -387 1190 959 241 281 0 90 chrX 89231262 89231351 -87742789 - L2 LINE L2 -33 3239 3159 244 317 48 29 chrX 89232314 89232418 -87741722 - MIR SINE MIR -1 261 156 542 271 92 82 chrX 89233913 89234120 -87740020 - MIR SINE MIR -5 257 49 239 318 0 0 chrX 89234301 89234364 -87739776 + L2 LINE L2 3201 3263 -9 490 287 60 18 chrX 89236672 89236839 -87737301 - MIR SINE MIR -6 256 83 1843 158 3 3 chrX 89237199 89237503 -87736637 - AluJb SINE Alu -8 304 1 180 342 0 40 chrX 89237748 89237824 -87736316 + L2 LINE L2 3198 3270 -2 180 77 0 0 chrX 89237852 89237878 -87736262 + (CA)n Simple_repeat Simple_repeat 1 26 0 317 325 191 6 chrX 89238326 89238483 -87735657 + MIR3 SINE MIR 16 201 -7 642 301 140 28 chrX 89239108 89239813 -87734327 + L1ME4a LINE L1 5337 6120 -1 338 320 62 8 chrX 89239815 89239943 -87734197 + MIR SINE MIR 25 159 -103 431 307 107 28 chrX 89240247 89240462 -87733678 + Charlie8 DNA MER1_type 70 275 -2142 1041 199 19 4 chrX 89240782 89241038 -87733102 + L1MA4 LINE L1 6037 6296 -4 279 54 0 0 chrX 89241238 89241275 -87732865 + (CATA)n Simple_repeat Simple_repeat 2 38 0 2466 113 5 24 chrX 89241992 89242363 -87731777 + THE1B LTR MaLR 1 364 0 9948 95 58 55 chrX 89242363 89243939 -87730201 + THE1B-int LTR MaLR 1 1580 0 2403 119 8 27 chrX 89243939 89244310 -87729830 + THE1B LTR MaLR 1 364 0 22 35 0 0 chrX 89245274 89245303 -87728837 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chrX 89245636 89245672 -87728468 + (TG)n Simple_repeat Simple_repeat 2 37 0 22 56 0 0 chrX 89246510 89246546 -87727594 + AT_rich Low_complexity Low_complexity 1 36 0 232 363 0 18 chrX 89246576 89246689 -87727451 + L3 LINE CR1 899 1009 -568 669 315 17 39 chrX 89246905 89247137 -87727003 - MIR SINE MIR -26 236 10 4174 249 69 24 chrX 89247206 89248508 -87725632 + L1M4 LINE L1 24 1384 -5158 428 182 0 0 chrX 89248513 89248590 -87725550 + L1M4 LINE L1 3149 3225 -3419 * 8234 191 33 10 chrX 89248580 89250002 -87724138 + L1MA2 LINE L1 3153 4645 -2920 2382 53 3 0 chrX 89250002 89250315 -87723825 - AluY SINE Alu 0 314 1 8234 191 33 10 chrX 89250315 89251229 -87722911 + L1MA2 LINE L1 4645 5537 -2028 6655 122 16 6 chrX 89251240 89252360 -87721780 + L1MA2 LINE L1 6593 7723 0 2447 182 10 12 chrX 89252371 89252870 -87721270 + L1MB7 LINE L1 5679 6176 -8 738 167 0 0 chrX 89253438 89253552 -87720588 + FLAM_C SINE Alu 10 123 -20 315 239 0 0 chrX 89253583 89253631 -87720509 - L1MC4 LINE L1 -1337 6705 6655 261 0 0 0 chrX 89253631 89253660 -87720480 + (GA)n Simple_repeat Simple_repeat 2 30 0 315 239 0 0 chrX 89253660 89253682 -87720458 - L1MC4 LINE L1 -1386 6656 6635 687 236 0 0 chrX 89253683 89253827 -87720313 + FRAM SINE Alu 1 144 -32 596 167 13 26 chrX 89253829 89253985 -87720155 + GA-rich Low_complexity Low_complexity 4 157 0 230 196 65 0 chrX 89253998 89254105 -87720035 + GA-rich Low_complexity Low_complexity 2 115 0 323 77 0 0 chrX 89254241 89254280 -87719860 - tRNA-Thr-ACA tRNA tRNA -37 39 1 198 71 0 0 chrX 89254309 89254337 -87719803 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 316 272 7 88 chrX 89254742 89254889 -87719251 - MIR SINE MIR -50 212 78 423 0 0 0 chrX 89255223 89255270 -87718870 + (T)n Simple_repeat Simple_repeat 1 47 0 441 296 52 7 chrX 89255459 89255594 -87718546 + L3 LINE CR1 219 359 -1218 300 316 0 0 chrX 89255739 89255815 -87718325 - L2 LINE L2 -4 3268 3193 22 70 0 0 chrX 89255834 89255877 -87718263 + AT_rich Low_complexity Low_complexity 1 43 0 629 320 87 21 chrX 89255881 89256350 -87717790 - L1ME LINE L1 -304 5817 5318 289 375 0 0 chrX 89256633 89256737 -87717403 + L3 LINE CR1 364 467 -1110 22 0 0 0 chrX 89256804 89256826 -87717314 + AT_rich Low_complexity Low_complexity 1 22 0 484 316 139 17 chrX 89256826 89257120 -87717020 + L2 LINE L2 1991 2320 -994 290 402 73 39 chrX 89257264 89257620 -87716520 + L2 LINE L2 2903 3270 -2 248 229 0 0 chrX 89257613 89257661 -87716479 + L3 LINE CR1 463 510 -1067 * 365 322 53 35 chrX 89257677 89257848 -87716292 - MER5B DNA MER1_type -3 175 2 404 293 84 11 chrX 89258108 89258299 -87715841 + L1ME LINE L1 5599 5803 -318 22 0 0 0 chrX 89258371 89258393 -87715747 + AT_rich Low_complexity Low_complexity 1 22 0 784 269 69 5 chrX 89258458 89258674 -87715466 + MIR SINE MIR 3 232 -30 263 300 12 0 chrX 89258691 89258771 -87715369 - MIR SINE MIR -22 240 160 3126 114 28 14 chrX 89258954 89259447 -87714693 + L1PA13 LINE L1 5662 6161 -2 471 322 97 31 chrX 89259848 89260137 -87714003 + L2 LINE L2 3003 3310 -3 588 322 79 77 chrX 89260713 89261167 -87712973 + L3b LINE CR1 1111 1565 -18 2763 111 2 0 chrX 89262296 89262710 -87711430 - L1PA13 LINE L1 0 6163 5749 963 88 0 0 chrX 89264332 89264468 -87709672 + L1PB1 LINE L1 6016 6151 0 186 103 0 0 chrX 89265479 89265508 -87708632 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1337 197 194 47 chrX 89266674 89266857 -87707283 - L1MC3 LINE L1 -10 7775 7620 1497 206 13 27 chrX 89266857 89267158 -87706982 + AluJb SINE Alu 1 297 -15 1337 197 194 47 chrX 89267158 89267501 -87706639 - L1MC3 LINE L1 -165 7620 7172 1941 175 113 13 chrX 89267509 89267898 -87706242 - MSTA LTR MaLR 0 428 1 4919 187 186 27 chrX 89267898 89269260 -87704880 - MSTA-int LTR MaLR 0 1580 3 279 215 46 0 chrX 89269261 89269326 -87704814 - MLT1F1 LTR MaLR -462 105 38 1313 188 68 46 chrX 89269326 89269693 -87704447 - L1MD3 LINE L1 -684 7101 6727 2386 81 0 0 chrX 89270146 89270443 -87703697 + AluY SINE Alu 1 297 -14 4096 37 0 0 chrX 89270515 89271005 -87703135 - L1PA5 LINE L1 -1 6153 5664 7627 26 0 0 chrX 89270526 89271544 -87702596 - L1PA5 LINE L1 -12 6142 5125 477 34 0 0 chrX 89273478 89273537 -87700603 + (CA)n Simple_repeat Simple_repeat 2 60 0 468 153 0 0 chrX 89273582 89273667 -87700473 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 2209 175 19 48 chrX 89273667 89274148 -87699992 - MLT2B1 LTR ERVL -42 478 12 1899 164 133 18 chrX 89274199 89274582 -87699558 + MSTA LTR MaLR 1 427 -1 7859 140 45 46 chrX 89274585 89276095 -87698045 + MSTA-int LTR MaLR 3 1510 -70 1281 186 180 9 chrX 89276099 89276416 -87697724 + MSTA LTR MaLR 58 428 0 2232 141 0 0 chrX 89276854 89277166 -87696974 + AluSx SINE Alu 1 312 0 476 270 0 24 chrX 89277368 89277494 -87696646 + MIR3 SINE MIR 85 207 -1 42256 38 1 0 chrX 89277600 89283743 -87690397 + L1PA4 LINE L1 7 6155 0 198 0 0 0 chrX 89283752 89283774 -87690366 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 264 336 94 22 chrX 89284594 89284940 -87689200 + MLT1I LTR MaLR 72 450 0 445 310 12 58 chrX 89285164 89285406 -87688734 - LTR33 LTR ERVL 0 521 291 584 301 27 0 chrX 89285440 89285623 -87688517 - LTR33 LTR ERVL -330 191 4 349 337 97 40 chrX 89286921 89287250 -87686890 + L2 LINE L2 2366 2713 -601 213 121 0 0 chrX 89288012 89288045 -87686095 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 31 0 0 0 chrX 89289304 89289335 -87684805 + AT_rich Low_complexity Low_complexity 1 31 0 286 304 134 0 chrX 89289594 89289706 -87684434 - L2 LINE L2 -19 3253 3127 3893 114 6 0 chrX 89290057 89290581 -87683559 + MER1A DNA MER1_type 1 527 0 631 301 33 6 chrX 89290622 89290805 -87683335 + MIR3 SINE MIR 18 205 -3 2022 137 7 0 chrX 89292319 89292604 -87681536 - AluSx SINE Alu -25 287 1 494 302 80 17 chrX 89292604 89292782 -87681358 - MIR SINE MIR -62 146 5 1225 103 15 39 chrX 89292804 89293007 -87681133 + L1PA15 LINE L1 5960 6157 -8 2409 61 7 29 chrX 89295232 89295542 -87678598 - AluSg SINE Alu -7 303 1 247 325 41 77 chrX 89295571 89295817 -87678323 + L3 LINE CR1 733 969 -608 267 290 37 28 chrX 89295854 89295961 -87678179 - MIR SINE MIR -3 259 152 192 158 26 0 chrX 89297038 89297076 -87677064 + MIR SINE MIR 224 262 0 427 280 128 62 chrX 89297824 89298113 -87676027 - L3 LINE CR1 -7 1570 1263 414 57 0 0 chrX 89298737 89298790 -87675350 + (ATG)n Simple_repeat Simple_repeat 2 54 0 549 231 160 22 chrX 89298793 89298999 -87675141 - MIR SINE MIR -6 256 25 216 224 129 95 chrX 89299782 89299898 -87674242 + MIR SINE MIR 23 142 -120 195 221 35 0 chrX 89299898 89299984 -87674156 + (TA)n Simple_repeat Simple_repeat 2 90 0 23 33 0 0 chrX 89299993 89300023 -87674117 + AT_rich Low_complexity Low_complexity 1 30 0 387 0 0 0 chrX 89300390 89300433 -87673707 + (CA)n Simple_repeat Simple_repeat 2 44 0 484 202 81 0 chrX 89300948 89301047 -87673093 - MER81 DNA DNA -7 107 1 1223 157 89 6 chrX 89301381 89301639 -87672501 + L1PB4 LINE L1 5871 6141 -15 537 183 8 114 chrX 89301645 89301776 -87672364 + MER5B DNA MER1_type 61 177 -1 236 154 0 77 chrX 89302770 89302835 -87671305 + L1 LINE L1 4916 4975 -1171 370 78 0 0 chrX 89303529 89303586 -87670554 - MLT2C1 LTR ERVL 0 397 350 331 208 40 0 chrX 89303592 89303717 -87670423 + (TA)n Simple_repeat Simple_repeat 1 130 0 261 188 69 0 chrX 89303732 89303833 -87670307 + (TA)n Simple_repeat Simple_repeat 2 109 0 55 40 0 0 chrX 89303881 89303957 -87670183 + AT_rich Low_complexity Low_complexity 1 76 0 1412 228 95 31 chrX 89303957 89304408 -87669732 - MLT2B1 LTR ERVL -40 480 1 21 36 0 0 chrX 89304482 89304510 -87669630 + AT_rich Low_complexity Low_complexity 1 28 0 523 284 110 35 chrX 89305866 89306321 -87667819 + L1ME4a LINE L1 5452 5940 -181 833 219 20 133 chrX 89307273 89307730 -87666410 - MLT1I LTR MaLR -1 408 4 2363 138 40 30 chrX 89307730 89308158 -87665982 + MSTB1 LTR MaLR 1 432 0 505 300 143 14 chrX 89311119 89311329 -87662811 + MIR SINE MIR 20 256 -6 415 260 12 58 chrX 89312397 89312490 -87661650 + MLT1K LTR MaLR 420 503 -85 1839 184 28 8 chrX 89312490 89312848 -87661292 + MLT1A1 LTR MaLR 1 365 0 415 260 12 58 chrX 89312848 89312927 -87661213 + MLT1K LTR MaLR 503 584 -4 27 29 0 0 chrX 89313097 89313131 -87661009 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chrX 89313294 89313324 -87660816 + AT_rich Low_complexity Low_complexity 1 30 0 242 93 47 0 chrX 89314064 89314107 -87660033 + L1ME3A LINE L1 1282 1326 -5097 331 300 47 40 chrX 89314120 89314270 -87659870 + L1ME3A LINE L1 1787 1937 -4994 606 280 80 74 chrX 89314286 89314501 -87659639 + L1ME3A LINE L1 1987 2199 -4923 2335 82 0 25 chrX 89314501 89314816 -87659324 + AluSc SINE Alu 1 307 -2 606 280 80 74 chrX 89314816 89315627 -87658513 + L1ME3A LINE L1 2199 3019 -4103 1287 235 60 50 chrX 89315753 89316289 -87657851 + L1ME3A LINE L1 6418 6958 -7 206 282 56 42 chrX 89316353 89316424 -87657716 - L2 LINE L2 0 3313 3242 1820 170 0 0 chrX 89316430 89316755 -87657385 + AluJo SINE Alu 1 325 0 14859 171 22 6 chrX 89317315 89322361 -87651779 + L1PA14 LINE L1 1 5448 -2151 1606 213 0 7 chrX 89322361 89322671 -87651469 + AluJb SINE Alu 1 308 -4 14859 171 22 6 chrX 89322671 89324859 -87649281 + L1PA14 LINE L1 5448 7598 -1 2244 130 19 3 chrX 89324859 89325217 -87648923 + L1MB3 LINE L1 5814 6181 -2 1719 212 61 20 chrX 89325950 89326394 -87647746 + LTR40b LTR ERVL 1 462 0 209 128 26 0 chrX 89326453 89326492 -87647648 + (TAA)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chrX 89327045 89327068 -87647072 + AT_rich Low_complexity Low_complexity 1 23 0 2618 176 13 34 chrX 89327075 89327610 -87646530 + L1MD3 LINE L1 7462 7985 -10 2256 102 0 3 chrX 89329387 89329682 -87644458 + AluY SINE Alu 1 294 -17 300 161 0 0 chrX 89329832 89329894 -87644246 + (TTA)n Simple_repeat Simple_repeat 2 63 0 595 306 63 0 chrX 89330052 89330259 -87643881 + MIR SINE MIR 38 256 -6 261 182 45 0 chrX 89330413 89330479 -87643661 + (TA)n Simple_repeat Simple_repeat 2 70 0 1040 224 40 9 chrX 89331186 89331414 -87642726 + MIR SINE MIR 11 245 -17 2815 3 0 0 chrX 89331913 89332216 -87641924 + AluYa5 SINE Alu 1 303 -8 344 268 98 12 chrX 89332606 89332751 -87641389 - MIR SINE MIR -47 215 52 1057 277 46 35 chrX 89333580 89333948 -87640192 - L1MC4a LINE L1 -1929 5879 5508 1918 166 84 55 chrX 89333948 89334351 -87639789 + MSTA LTR MaLR 1 415 -13 637 247 130 14 chrX 89334363 89334759 -87639381 - L1MC4a LINE L1 -749 5397 5073 197 263 0 70 chrX 89335259 89335316 -87638824 + L3 LINE CR1 324 376 -1201 22 0 0 0 chrX 89335333 89335355 -87638785 + AT_rich Low_complexity Low_complexity 1 22 0 384 293 125 50 chrX 89335463 89335760 -87638380 + L3 LINE CR1 553 871 -706 306 277 0 32 chrX 89336107 89336201 -87637939 + GA-rich Low_complexity Low_complexity 1 91 0 14139 86 5 8 chrX 89336218 89337968 -87636172 - L1PA7 LINE L1 -3 6151 4404 2320 76 0 23 chrX 89337968 89338270 -87635870 - AluY SINE Alu -16 295 1 14139 86 5 8 chrX 89338270 89339277 -87634863 - L1PA7 LINE L1 -1750 4404 3396 25 0 0 0 chrX 89339552 89339577 -87634563 + AT_rich Low_complexity Low_complexity 1 25 0 354 263 121 5 chrX 89339822 89340012 -87634128 - L1ME4a LINE L1 -206 5915 5704 250 262 98 0 chrX 89340147 89340208 -87633932 - L1ME4a LINE L1 -543 5578 5512 230 308 120 0 chrX 89340553 89340686 -87633454 - L1MC4a LINE L1 -1083 5063 4915 209 260 0 50 chrX 89341166 89341266 -87632874 + GA-rich Low_complexity Low_complexity 3 97 0 244 307 0 0 chrX 89341652 89341727 -87632413 - L1PA13 LINE L1 -5088 1699 1625 1525 72 14 0 chrX 89341768 89341975 -87632165 + L1PA6 LINE L1 5943 6152 -2 1989 156 0 0 chrX 89342037 89342326 -87631814 - AluSx SINE Alu -22 290 2 1568 176 94 80 chrX 89342326 89342793 -87631347 + LTR54 LTR ERV1 18 478 -20 629 369 157 10 chrX 89343190 89343564 -87630576 - L2 LINE L2 -194 3078 2761 2473 73 84 0 chrX 89343564 89343919 -87630221 + L1PA13 LINE L1 5779 6163 0 629 369 157 10 chrX 89343919 89344269 -87629871 - L2 LINE L2 -511 2761 2233 211 250 0 0 chrX 89344871 89344915 -87629225 + T-rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chrX 89345238 89345272 -87628868 + AT_rich Low_complexity Low_complexity 1 34 0 1858 172 0 3 chrX 89345592 89345895 -87628245 + AluJb SINE Alu 11 312 0 307 343 0 34 chrX 89345904 89346050 -87628090 + L1ME4a LINE L1 5309 5449 -2359 846 259 79 25 chrX 89346094 89346461 -87627679 + L1ME4a LINE L1 5537 5923 -198 184 365 0 14 chrX 89348100 89348174 -87625966 + MIR SINE MIR 13 85 -177 240 35 0 0 chrX 89348500 89348529 -87625611 + (TG)n Simple_repeat Simple_repeat 2 30 0 2222 95 0 0 chrX 89348531 89348814 -87625326 - AluSx SINE Alu -29 283 1 1514 235 49 86 chrX 89349061 89349628 -87624512 + MLT1E LTR MaLR 48 593 0 235 241 205 0 chrX 89349735 89349818 -87624322 + MIR SINE MIR 51 150 -112 887 253 33 46 chrX 89349889 89350130 -87624010 - MIR SINE MIR -23 239 2 189 0 0 0 chrX 89350640 89350661 -87623479 + (A)n Simple_repeat Simple_repeat 1 21 0 243 326 70 23 chrX 89350735 89350864 -87623276 - L3b LINE CR1 -115 1468 1334 26 0 0 0 chrX 89350983 89351009 -87623131 + AT_rich Low_complexity Low_complexity 1 26 0 183 333 0 39 chrX 89351038 89351103 -87623037 + L2 LINE L2 3193 3256 -16 2287 116 3 0 chrX 89351103 89351414 -87622726 - AluSx SINE Alu 0 312 1 183 333 0 39 chrX 89351414 89351426 -87622714 + L2 LINE L2 3256 3267 -5 465 291 101 21 chrX 89351882 89352071 -87622069 + MIR SINE MIR 2 205 -57 235 282 36 36 chrX 89352223 89352333 -87621807 - L3 LINE CR1 -625 952 843 384 310 148 29 chrX 89353668 89354181 -87619959 + L1MC4a LINE L1 4742 5315 -831 1008 283 59 10 chrX 89354421 89354728 -87619412 + MER102a DNA MER1_type 8 329 -1 263 338 0 0 chrX 89355283 89355360 -87618780 + L2 LINE L2 3186 3262 -10 237 372 113 16 chrX 89355369 89355689 -87618451 - L2 LINE L2 -976 2338 1988 571 289 49 58 chrX 89355899 89356207 -87617933 + L1MC4a LINE L1 5622 5926 -1882 224 315 77 94 chrX 89356402 89356742 -87617398 - L2 LINE L2 -1366 1948 1615 23 0 0 0 chrX 89357189 89357212 -87616928 + AT_rich Low_complexity Low_complexity 1 23 0 2711 243 20 26 chrX 89358395 89359042 -87615098 - MER82 DNA MER2_type -10 643 1 2612 291 83 21 chrX 89359287 89360918 -87613222 + L1MEc LINE L1 473 2205 -4191 634 234 35 12 chrX 89360910 89361166 -87612974 + L1MEc LINE L1 3152 3413 -2802 * 42782 34 22 1 chrX 89361873 89367900 -87606240 + L1PA2 LINE L1 1 6155 0 900 197 27 5 chrX 89367900 89368088 -87606052 + L1MB8 LINE L1 5936 6127 -51 3205 241 73 46 chrX 89368128 89368872 -87605268 + L1ME LINE L1 384 1106 -4974 1627 225 84 76 chrX 89368872 89369493 -87604647 - MLT1E2 LTR MaLR 0 626 1 3205 241 73 46 chrX 89369493 89370972 -87603168 + L1ME LINE L1 1106 2651 -3429 2769 82 19 0 chrX 89370973 89371338 -87602802 + THE1C LTR MaLR 1 372 -3 6396 134 101 8 chrX 89371341 89372790 -87601350 + THE1C-int LTR MaLR 1 1580 0 2595 111 3 13 chrX 89372790 89373169 -87600971 + THE1C LTR MaLR 1 375 0 3803 248 31 14 chrX 89373169 89374513 -87599627 + L1ME LINE L1 2648 4014 -2066 1226 244 65 24 chrX 89374510 89375048 -87599092 + L1ME LINE L1 4385 4944 -1136 * 5241 106 23 6 chrX 89375081 89375893 -87598247 - L1MA1 LINE L1 -12 6290 5465 1495 104 0 5 chrX 89375920 89376132 -87598008 + L1PA8 LINE L1 5956 6166 -6 240 35 0 0 chrX 89377488 89377517 -87596623 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1894 75 0 0 chrX 89377529 89377770 -87596370 - L1PA7 LINE L1 -13 6141 5901 5688 227 37 30 chrX 89378463 89381279 -87592861 - L1PA12 LINE L1 -4215 3369 6 5431 179 21 10 chrX 89381285 89382468 -87591672 - L1 LINE L1 -1818 5747 4552 2073 89 0 0 chrX 89382468 89382750 -87591390 - L1PA8 LINE L1 0 6172 5891 27349 128 16 57 chrX 89383786 89389951 -87584189 - L1PA8 LINE L1 -244 5910 12 6129 157 10 6 chrX 89389961 89391909 -87582231 - L1 LINE L1 -3001 4564 2570 837 226 5 0 chrX 89391925 89392115 -87582025 + L1M1 LINE L1 398 588 -6977 7715 16 6 2 chrX 89392115 89393560 -87580580 + L1PA2 LINE L1 4708 6155 0 1620 200 29 18 chrX 89393567 89393947 -87580193 - L1 LINE L1 -7170 395 12 2482 211 76 43 chrX 89393947 89394069 -87580071 + L1ME1 LINE L1 4996 5112 -1054 11328 25 0 0 chrX 89394069 89396173 -87577967 + L1PA2 LINE L1 4045 6151 -4 2482 211 76 43 chrX 89396173 89397175 -87576965 + L1ME1 LINE L1 5112 6161 -5 246 81 0 0 chrX 89397492 89397529 -87576611 + (CA)n Simple_repeat Simple_repeat 2 38 0 430 250 2 1 chrX 89398125 89398227 -87575913 + MIR SINE MIR 62 165 -43 192 77 0 0 chrX 89398229 89398255 -87575885 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 89400218 89400241 -87573899 + AT_rich Low_complexity Low_complexity 1 23 0 452 280 76 38 chrX 89400427 89400559 -87573581 - L2 LINE L2 0 3272 3136 540 272 95 0 chrX 89400868 89401015 -87573125 - L2 LINE L2 -1 3271 3111 1590 54 0 0 chrX 89403414 89403598 -87570542 - AluSc SINE Alu -100 209 26 537 211 60 54 chrX 89404209 89404375 -87569765 - MIR SINE MIR -10 252 86 2351 93 7 0 chrX 89404395 89404705 -87569435 - AluSx SINE Alu 0 312 1 1476 118 45 0 chrX 89405066 89405286 -87568854 - MER30 DNA MER1_type 0 230 1 779 188 81 92 chrX 89405296 89405394 -87568746 + MLT1B LTR MaLR 1 99 -291 1672 169 107 13 chrX 89405394 89405702 -87568438 - MER1B DNA MER1_type 0 337 1 779 188 81 92 chrX 89405702 89405771 -87568369 + MLT1B LTR MaLR 99 167 -223 2266 105 7 0 chrX 89405771 89406077 -87568063 + AluSx SINE Alu 1 308 -4 779 188 81 92 chrX 89406077 89406169 -87567971 + MLT1B LTR MaLR 167 258 -132 234 263 23 103 chrX 89406284 89406459 -87567681 - L2 LINE L2 -214 3058 2898 1222 176 35 27 chrX 89406972 89407228 -87566912 - THE1-int LTR MaLR -532 1048 791 1276 245 82 24 chrX 89407810 89408189 -87565951 - MLT1D LTR MaLR -18 487 87 558 160 8 42 chrX 89408466 89408585 -87565555 + MLT1C LTR MaLR 1 115 -352 2183 154 22 3 chrX 89408703 89409060 -87565080 - THE1B LTR MaLR 0 364 1 5047 119 1 1 chrX 89409060 89409810 -87564330 - THE1B-int LTR MaLR 0 1580 831 712 294 123 41 chrX 89411323 89411815 -87562325 + MLT1H1 LTR MaLR 23 578 -17 12335 178 4 26 chrX 89411919 89414137 -87560003 + L1PB1 LINE L1 2330 4427 -1724 2842 75 23 102 chrX 89414137 89414576 -87559564 + MLT2A1 LTR ERVL 1 400 -44 267 31 0 0 chrX 89414576 89414608 -87559532 + (TA)n Simple_repeat Simple_repeat 2 33 0 2842 75 23 102 chrX 89414608 89414650 -87559490 + MLT2A1 LTR ERVL 400 444 0 12335 178 4 26 chrX 89414650 89416338 -87557802 + L1PB1 LINE L1 4427 6150 -1 22 0 0 0 chrX 89416338 89416360 -87557780 + AT_rich Low_complexity Low_complexity 1 22 0 986 324 75 23 chrX 89416727 89417435 -87556705 + L2 LINE L2 2563 3312 -1 198 118 0 0 chrX 89418098 89418132 -87556008 + (CAT)n Simple_repeat Simple_repeat 1 34 0 193 306 30 97 chrX 89418817 89418951 -87555189 + L2 LINE L2 3179 3303 -10 280 317 8 89 chrX 89419309 89419432 -87554708 - L2 LINE L2 -3 3269 3157 234 133 108 0 chrX 89419448 89419531 -87554609 + (CTAAA)n Simple_repeat Simple_repeat 2 93 0 265 284 45 45 chrX 89419619 89419707 -87554433 - L2 LINE L2 -225 3047 2960 1178 172 14 46 chrX 89419761 89420179 -87553961 - MLT1D LTR MaLR -3 502 47 844 271 74 7 chrX 89420215 89420484 -87553656 - LTR33 LTR ERVL -234 287 1 249 274 44 35 chrX 89420484 89420597 -87553543 - L2 LINE L2 -517 2797 2684 509 250 51 61 chrX 89421095 89421291 -87552849 - L2 LINE L2 -2 3311 3118 1820 165 3 17 chrX 89422309 89422602 -87551538 + AluSx SINE Alu 1 311 0 199 0 0 0 chrX 89422602 89422624 -87551516 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 865 271 65 1 chrX 89423507 89423740 -87550400 - MIR SINE MIR -15 247 2 1470 160 2 15 chrX 89423783 89424304 -87549836 + LTR60 LTR ERV1 1 586 0 446 207 24 138 chrX 89424136 89424426 -87549714 + TAR1 Satellite telomeric 35 291 -1820 * 242 28 0 28 chrX 89424619 89424655 -87549485 + (CAAAAA)n Simple_repeat Simple_repeat 6 40 0 735 314 31 27 chrX 89425295 89425553 -87548587 + MIR SINE MIR 2 260 -2 1890 92 88 0 chrX 89425888 89426161 -87547979 + AluSq SINE Alu 1 297 -16 345 307 132 28 chrX 89426940 89427152 -87546988 - L2 LINE L2 0 3313 3080 1676 170 23 85 chrX 89429994 89430383 -87543757 + MLT1A1 LTR MaLR 1 365 0 5164 227 85 43 chrX 89430384 89432015 -87542125 + MLT1A1-int LTR MaLR 1 1700 -35 374 176 0 0 chrX 89432015 89432083 -87542057 + MLT1A1-int LTR MaLR 1668 1735 0 2151 154 3 14 chrX 89432083 89432452 -87541688 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chrX 89432482 89432511 -87541629 + AT_rich Low_complexity Low_complexity 1 29 0 957 239 177 3 chrX 89433435 89433757 -87540383 - LTR16C LTR ERVL -2 489 112 299 197 0 16 chrX 89433879 89433940 -87540200 + MER5A DNA MER1_type 30 89 -100 418 68 0 27 chrX 89433979 89434052 -87540088 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 578 268 56 52 chrX 89434920 89435133 -87539007 - MIR SINE MIR -30 232 19 679 390 39 17 chrX 89438666 89439310 -87534830 + L2 LINE L2 546 1203 -2111 2121 140 3 0 chrX 89439524 89439831 -87534309 - AluSx SINE Alu -4 308 1 188 294 0 0 chrX 89439930 89439981 -87534159 - MIR SINE MIR -65 143 93 621 316 16 16 chrX 89442046 89442236 -87531904 + MIR SINE MIR 2 191 -71 198 269 75 0 chrX 89442246 89442313 -87531827 - MIR SINE MIR -6 256 185 29911 104 13 57 chrX 89442317 89448741 -87525399 - L1PA7 LINE L1 -7 6147 13 452 212 51 34 chrX 89448768 89448886 -87525254 - MIR SINE MIR -141 121 2 544 257 86 7 chrX 89449011 89449163 -87524977 + MIR SINE MIR 20 183 -79 701 329 28 4 chrX 89450695 89450947 -87523193 - MIR SINE MIR -3 259 2 762 313 31 27 chrX 89451070 89451326 -87522814 + MIR SINE MIR 6 262 0 718 290 20 98 chrX 89452339 89452746 -87521394 + L2 LINE L2 2862 3236 -36 498 331 0 0 chrX 89452884 89453011 -87521129 + L2 LINE L2 3146 3272 0 1880 285 33 90 chrX 89453120 89454146 -87519994 + L3 LINE CR1 609 1576 -1 1232 93 49 0 chrX 89454174 89454357 -87519783 + MER30 DNA MER1_type 1 192 -38 5582 121 34 30 chrX 89454544 89455163 -87518977 + L1MA5 LINE L1 5163 5793 -507 2154 95 0 3 chrX 89455163 89455480 -87518660 + AluSg SINE Alu 1 316 0 5582 121 34 30 chrX 89455480 89455990 -87518150 + L1MA5 LINE L1 5793 6300 0 2234 112 0 7 chrX 89456014 89456317 -87517823 + AluSx SINE Alu 1 301 -11 316 326 23 8 chrX 89456357 89456489 -87517651 + MIR SINE MIR 20 153 -109 248 98 137 0 chrX 89456815 89456866 -87517274 - L1PA16 LINE L1 -8 6158 6101 1668 84 0 12 chrX 89456887 89457136 -87517004 - L1P4 LINE L1 -560 5601 5356 427 162 8 0 chrX 89457136 89457236 -87516904 + L1P4 LINE L1 5248 5353 -793 5491 65 1 0 chrX 89457704 89458393 -87515747 + LTR8 LTR ERV1 1 690 -1 422 333 28 7 chrX 89459163 89459304 -87514836 + MIR3 SINE MIR 17 160 -48 201 234 0 21 chrX 89459626 89459673 -87514467 + MIR3 SINE MIR 154 199 -9 198 0 0 0 chrX 89459843 89459865 -87514275 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 360 77 0 0 chrX 89460078 89460130 -87514010 + (GA)n Simple_repeat Simple_repeat 2 53 0 433 248 7 36 chrX 89461161 89461298 -87512842 + MER94 DNA DNA 2 134 0 4816 120 17 30 chrX 89462756 89463596 -87510544 - L1MA4 LINE L1 -7 6293 5465 206 388 62 0 chrX 89463684 89463813 -87510327 + MIR3 SINE MIR 58 194 -14 376 284 97 3 chrX 89463906 89464024 -87510116 + MIR SINE MIR 24 150 -58 1848 173 3 23 chrX 89464359 89464706 -87509434 - MER58B DNA MER1_type 0 341 2 397 315 23 8 chrX 89464840 89464970 -87509170 + MIR SINE MIR 5 136 -126 944 280 47 6 chrX 89464972 89465290 -87508850 + L1MC4a LINE L1 5506 5836 -1972 281 213 107 0 chrX 89465388 89465463 -87508677 + MIR SINE MIR 139 221 -41 273 217 109 43 chrX 89465463 89465555 -87508585 + L2 LINE L2 3196 3293 -20 723 283 0 35 chrX 89465578 89465776 -87508364 + MIR SINE MIR 16 206 -56 826 274 55 5 chrX 89465798 89466017 -87508123 + LTR33 LTR ERVL 6 235 -286 448 254 109 0 chrX 89466098 89466236 -87507904 + LTR33 LTR ERVL 368 520 -1 205 182 0 0 chrX 89466720 89466753 -87507387 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 294 287 23 60 chrX 89467005 89467113 -87507027 + L1ME4a LINE L1 5757 5855 -266 1314 93 51 14 chrX 89467113 89467329 -87506811 + L1PA11 LINE L1 5947 6170 -4 294 287 23 60 chrX 89467329 89467436 -87506704 + L1ME4a LINE L1 5855 5964 -157 432 55 0 0 chrX 89467436 89467480 -87506660 + (TG)n Simple_repeat Simple_repeat 1 99 0 432 55 0 0 chrX 89467480 89467535 -87506605 + (TG)n Simple_repeat Simple_repeat 2 56 0 1527 215 64 26 chrX 89467555 89467946 -87506194 + MLT1D LTR MaLR 5 410 -95 234 213 0 16 chrX 89468077 89468138 -87506002 + (TA)n Simple_repeat Simple_repeat 2 61 0 189 0 0 0 chrX 89468138 89468159 -87505981 + (CA)n Simple_repeat Simple_repeat 2 22 0 311 264 11 0 chrX 89468499 89468590 -87505550 - L1MC/D LINE L1 -2013 5795 5704 6593 71 0 8 chrX 89468592 89469603 -87504537 + L1PA8A LINE L1 5127 6130 -1 4778 100 0 18 chrX 89469726 89470445 -87503695 - L1P3 LINE L1 -5755 706 1 925 277 100 79 chrX 89470518 89470894 -87503246 - L1MEd LINE L1 -952 1538 1171 237 33 0 0 chrX 89470894 89470924 -87503216 + (CA)n Simple_repeat Simple_repeat 2 31 0 925 277 100 79 chrX 89470924 89471744 -87502396 - L1MEd LINE L1 -1319 1171 214 2210 145 53 51 chrX 89471744 89472198 -87501942 - MSTB2 LTR MaLR -2 455 1 925 277 100 79 chrX 89472198 89472352 -87501788 - L1MEd LINE L1 -2276 214 65 259 266 128 17 chrX 89472665 89472873 -87501267 + L1ME LINE L1 5254 5486 -635 192 125 0 0 chrX 89473086 89473118 -87501022 + (TAA)n Simple_repeat Simple_repeat 2 33 0 856 228 25 39 chrX 89473689 89473930 -87500210 + MIR SINE MIR 11 251 -11 202 205 0 0 chrX 89474491 89474530 -87499610 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 278 260 240 58 chrX 89474643 89474797 -87499343 + MER5A DNA MER1_type 5 186 -3 4460 184 17 25 chrX 89474969 89475244 -87498896 + L1MA9 LINE L1 4826 5102 -1210 204 40 0 0 chrX 89475244 89475269 -87498871 + (CA)n Simple_repeat Simple_repeat 2 26 0 4460 184 17 25 chrX 89475269 89476386 -87497754 + L1MA9 LINE L1 5102 6205 -107 2525 134 35 28 chrX 89476386 89476431 -87497709 - MSTA LTR MaLR 0 428 385 2520 47 0 10 chrX 89476431 89476732 -87497408 + AluY SINE Alu 1 298 -13 2525 134 35 28 chrX 89476732 89477111 -87497029 - MSTA LTR MaLR -43 385 1 4460 184 17 25 chrX 89477111 89477181 -87496959 + L1MA9 LINE L1 6205 6274 -38 485 260 112 18 chrX 89477218 89477387 -87496753 + MIR SINE MIR 75 259 -3 352 224 9 86 chrX 89477476 89477592 -87496548 + L2 LINE L2 3196 3302 -11 685 255 0 12 chrX 89479041 89479202 -87494938 - MIR SINE MIR -15 247 89 447 19 0 0 chrX 89479364 89479416 -87494724 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 210 380 79 0 chrX 89479457 89479569 -87494571 - MIR SINE MIR -82 126 32 2425 57 3 7 chrX 89479608 89479909 -87494231 - AluY SINE Alu -11 300 1 1266 162 8 4 chrX 89480016 89480251 -87493889 - L1MA6 LINE L1 0 6300 6065 2353 68 0 3 chrX 89480809 89481102 -87493038 - AluY SINE Alu -19 292 1 34 0 0 0 chrX 89481219 89481253 -87492887 + AT_rich Low_complexity Low_complexity 1 34 0 11912 150 25 5 chrX 89481253 89484639 -87489501 - L1MA2 LINE L1 0 7723 4268 773 230 10 0 chrX 89484777 89484981 -87489159 + L1 LINE L1 4189 4394 -1752 * 1182 208 27 17 chrX 89484978 89485272 -87488868 - L1MA2 LINE L1 -7254 311 15 324 215 15 133 chrX 89485282 89485417 -87488723 - L2 LINE L2 -6 3307 3189 282 268 70 0 chrX 89485417 89485488 -87488652 + MIR3 SINE MIR 108 183 -25 618 304 19 0 chrX 89485497 89485658 -87488482 + MIR SINE MIR 3 166 -96 22 0 0 0 chrX 89488326 89488348 -87485792 + AT_rich Low_complexity Low_complexity 1 22 0 6970 206 31 27 chrX 89489108 89490671 -87483469 - L1P LINE L1 -3242 2904 1331 2573 63 0 0 chrX 89490671 89490973 -87483167 - AluY SINE Alu -9 302 1 6970 206 31 27 chrX 89490973 89491282 -87482858 - L1P LINE L1 -4815 1331 1025 409 258 32 32 chrX 89491391 89491577 -87482563 + L1ME4a LINE L1 5932 6117 -4 588 321 27 14 chrX 89491823 89492044 -87482096 - MIR SINE MIR -2 260 37 26 0 0 0 chrX 89492429 89492455 -87481685 + AT_rich Low_complexity Low_complexity 1 26 0 4937 110 4 5 chrX 89492456 89493227 -87480913 - L1PA13 LINE L1 -1 6162 5393 13546 29 6 0 chrX 89493227 89495645 -87478495 - L1PA3 LINE L1 0 6155 3751 276 100 0 0 chrX 89495745 89495785 -87478355 + (A)n Simple_repeat Simple_repeat 1 40 0 310 256 13 0 chrX 89496227 89496305 -87477835 + MIR SINE MIR 172 250 -12 269 280 90 30 chrX 89496967 89497067 -87477073 + L2 LINE L2 3186 3291 -22 420 20 0 0 chrX 89498810 89498859 -87475281 + (CA)n Simple_repeat Simple_repeat 2 50 0 314 332 140 47 chrX 89499662 89499897 -87474243 + L2 LINE L2 2966 3222 -50 325 275 0 12 chrX 89501470 89501550 -87472590 - L2 LINE L2 0 3272 3194 452 304 9 0 chrX 89501611 89501723 -87472417 - L2 LINE L2 -8 3305 3193 489 303 109 0 chrX 89501724 89501889 -87472251 - MIR SINE MIR -78 184 2 479 292 7 14 chrX 89501988 89502132 -87472008 - MIR SINE MIR -3 259 117 2182 106 3 0 chrX 89502442 89502734 -87471406 - AluSx SINE Alu -19 293 1 364 339 0 15 chrX 89502792 89502922 -87471218 + MIR SINE MIR 2 129 -133 1938 120 0 31 chrX 89504916 89505207 -87468933 - AluSg SINE Alu -14 296 15 202 353 0 39 chrX 89505301 89505403 -87468737 - L2 LINE L2 -168 3104 3007 530 274 79 24 chrX 89506748 89507076 -87467064 + L1ME4a LINE L1 4491 4836 -1310 1108 253 150 33 chrX 89507556 89508036 -87466104 - L1MC4a LINE L1 -696 5648 5541 2174 125 0 0 chrX 89508036 89508339 -87465801 + AluSx SINE Alu 1 303 -9 1108 253 150 33 chrX 89508339 89508412 -87465728 - L1MC4a LINE L1 -803 5541 5478 641 280 64 28 chrX 89508442 89508772 -87465368 + L1ME4a LINE L1 5512 5858 -263 2221 108 3 0 chrX 89508772 89509069 -87465071 + AluSx SINE Alu 1 298 -14 641 280 64 28 chrX 89509069 89509099 -87465041 + L1ME4a LINE L1 5858 5885 -236 184 200 0 0 chrX 89509155 89509190 -87464950 - L2 LINE L2 -2 3311 3277 28 29 0 0 chrX 89510754 89510789 -87463351 + AT_rich Low_complexity Low_complexity 1 35 0 890 257 102 29 chrX 89510841 89511253 -87462887 - L1ME4a LINE L1 -223 5898 5457 305 255 35 7 chrX 89511438 89511579 -87462561 - L1ME4a LINE L1 -758 5410 5266 499 233 292 42 chrX 89511588 89511824 -87462316 + L2 LINE L2 3019 3313 0 2157 127 25 3 chrX 89511841 89512196 -87461944 + L1MA9 LINE L1 5949 6311 -1 580 346 60 16 chrX 89512204 89512574 -87461566 - L1ME4a LINE L1 -883 5263 4878 261 268 79 16 chrX 89512599 89512726 -87461414 + L2 LINE L2 3179 3313 0 195 289 0 0 chrX 89514122 89514167 -87459973 - MIR3 SINE MIR -22 186 142 2771 10 0 0 chrX 89515540 89515843 -87458297 - AluYa5 SINE Alu -8 303 1 322 325 42 33 chrX 89519173 89519293 -87454847 + L2 LINE L2 3142 3262 -10 268 404 83 0 chrX 89519526 89519682 -87454458 + L2 LINE L2 3104 3272 0 385 244 199 0 chrX 89519930 89520086 -87454054 + L2 LINE L2 3127 3313 0 303 282 96 29 chrX 89521494 89521667 -87452473 + MIR SINE MIR 35 216 -46 224 280 13 0 chrX 89523166 89523241 -87450899 + (AATTG)n Simple_repeat Simple_repeat 3 78 0 12215 113 14 51 chrX 89524032 89527067 -87447073 + L1P3 LINE L1 2 3055 -3406 1243 89 0 0 chrX 89527067 89527247 -87446893 + L1P3 LINE L1 3623 3802 -2659 307 310 85 16 chrX 89527446 89527575 -87446565 - MIR3 SINE MIR -60 148 11 28 48 0 0 chrX 89527665 89527707 -87446433 + AT_rich Low_complexity Low_complexity 1 42 0 266 252 92 61 chrX 89527971 89528102 -87446038 - MIR3 SINE MIR -66 142 8 446 321 62 12 chrX 89529428 89529590 -87444550 - L2 LINE L2 -1 3271 3102 1451 191 5 110 chrX 89529604 89530012 -87444128 - MLT1A1 LTR MaLR 0 365 1 198 103 0 0 chrX 89531307 89531336 -87442804 + (TTA)n Simple_repeat Simple_repeat 1 29 0 744 315 9 5 chrX 89531932 89532151 -87441989 - L3 LINE CR1 -389 1188 969 438 94 0 0 chrX 89533211 89533275 -87440865 + (TG)n Simple_repeat Simple_repeat 2 65 0 200 388 61 0 chrX 89533585 89533683 -87440457 + L2 LINE L2 3117 3220 -52 777 250 28 36 chrX 89533783 89534031 -87440109 + L2 LINE L2 3034 3279 -34 336 24 0 0 chrX 89534078 89534119 -87440021 + (CA)n Simple_repeat Simple_repeat 2 42 0 2084 139 3 0 chrX 89534183 89534484 -87439656 + AluSx SINE Alu 1 302 -10 526 302 114 7 chrX 89534981 89535201 -87438939 + MIR SINE MIR 10 248 -14 2141 94 27 3 chrX 89535232 89535530 -87438610 - AluSc SINE Alu -4 305 1 2387 83 0 0 chrX 89536887 89537187 -87436953 + AluY SINE Alu 1 300 -11 4570 43 48 3 chrX 89537351 89537938 -87436202 - L1PA5 LINE L1 0 6154 5542 806 127 0 0 chrX 89538187 89538297 -87435843 + AluSp SINE Alu 1 110 -203 923 258 39 16 chrX 89539442 89539698 -87434442 - MIR SINE MIR 0 262 1 284 283 28 47 chrX 89539698 89539802 -87434338 - MER5B DNA MER1_type -69 109 8 2728 204 117 23 chrX 89540902 89542349 -87431791 - L1MD2 LINE L1 -16 6343 4739 6607 48 2 0 chrX 89542663 89543519 -87430621 - L1PA7 LINE L1 -1 6153 5296 725 95 38 0 chrX 89543619 89543724 -87430416 - AluSq/x SINE Alu -203 109 1 351 266 0 0 chrX 89543726 89543805 -87430335 - MIR SINE MIR -111 151 73 2319 70 3 17 chrX 89543936 89544236 -87429904 - AluY SINE Alu -15 296 1 259 315 102 25 chrX 89544943 89545140 -87429000 + MIR SINE MIR 4 215 -47 324 48 0 0 chrX 89546908 89546950 -87427190 + (CA)n Simple_repeat Simple_repeat 2 43 0 248 170 19 0 chrX 89546953 89547006 -87427134 + (TA)n Simple_repeat Simple_repeat 1 54 0 792 183 0 0 chrX 89547006 89547137 -87427003 - FLAM_C SINE Alu -2 131 1 11175 178 17 21 chrX 89548227 89550639 -87423501 + L1P LINE L1 3001 5402 -744 28076 43 1 2 chrX 89550639 89554258 -87419882 + L1P LINE L1 8 3623 -2523 4788 155 23 15 chrX 89554358 89555183 -87418957 - L1PB1 LINE L1 -165 5986 5169 2688 45 0 0 chrX 89555183 89555493 -87418647 - AluY SINE Alu -1 310 1 4788 155 23 15 chrX 89555493 89556238 -87417902 - L1PB1 LINE L1 -982 5169 4400 297 0 0 0 chrX 89556238 89556271 -87417869 + (TA)n Simple_repeat Simple_repeat 2 34 0 4788 155 23 15 chrX 89556271 89556393 -87417747 - L1PB1 LINE L1 -1751 4400 4280 1174 227 29 9 chrX 89557283 89557626 -87416514 + L1 LINE L1 4763 5112 -1034 486 305 99 22 chrX 89558320 89558543 -87415597 - MIR SINE MIR -21 241 2 2044 94 3 23 chrX 89560751 89561059 -87413081 + AluSg SINE Alu 1 302 -8 1893 146 36 60 chrX 89562668 89563052 -87411088 + THE1C LTR MaLR 1 375 0 2272 86 24 0 chrX 89563365 89563656 -87410484 + AluSx SINE Alu 1 298 -14 1753 159 47 10 chrX 89563855 89564156 -87409984 + AluJo SINE Alu 1 312 0 251 290 16 0 chrX 89564157 89564219 -87409921 + GA-rich Low_complexity Low_complexity 2 64 0 713 93 9 0 chrX 89564319 89564426 -87409714 + (GAAA)n Simple_repeat Simple_repeat 2 109 0 2218 140 0 6 chrX 89564952 89565266 -87408874 - AluSx SINE Alu 0 312 1 24 32 0 0 chrX 89565275 89565306 -87408834 + AT_rich Low_complexity Low_complexity 1 31 0 524 129 21 0 chrX 89565420 89565513 -87408627 + L1MA6 LINE L1 6105 6199 -101 275 70 0 23 chrX 89565932 89565975 -87408165 + (TG)n Simple_repeat Simple_repeat 2 43 0 318 217 193 0 chrX 89565982 89566065 -87408075 - L1MC4 LINE L1 -1339 6703 6605 211 163 61 0 chrX 89566921 89566970 -87407170 + L2 LINE L2 3262 3313 0 266 185 22 33 chrX 89568765 89568857 -87405283 + L1MC5 LINE L1 7827 7917 -44 506 206 0 0 chrX 89569525 89569622 -87404518 + L2 LINE L2 2548 2644 -670 1464 208 31 3 chrX 89569628 89570018 -87404122 - L1 LINE L1 -1557 4589 4189 537 226 0 0 chrX 89570239 89570341 -87403799 + MER58B DNA MER1_type 240 341 0 471 233 67 0 chrX 89570347 89570497 -87403643 - MER112 DNA MER1_type -99 161 2 618 291 63 5 chrX 89570497 89570720 -87403420 - L2 LINE L2 -513 2801 2566 635 263 82 16 chrX 89571936 89572130 -87402010 + MIR SINE MIR 49 255 -7 959 235 19 45 chrX 89577241 89577509 -87396631 - MIR SINE MIR 0 262 2 2891 175 39 25 chrX 89577687 89578200 -87395940 + MLT2B1 LTR ERVL 1 520 0 928 185 120 25 chrX 89579565 89579765 -87394375 - MER20 DNA MER1_type 0 219 1 403 290 118 34 chrX 89579783 89580021 -87394119 + MIR SINE MIR 5 262 0 441 239 254 14 chrX 89581234 89581376 -87392764 + MER5A DNA MER1_type 14 189 0 302 310 0 0 chrX 89581441 89581512 -87392628 - L2 LINE L2 0 3272 3202 534 318 17 23 chrX 89582022 89582198 -87391942 + LTR33 LTR ERVL 100 274 -247 476 200 23 46 chrX 89582266 89582396 -87391744 + LTR33 LTR ERVL 392 518 -3 2323 103 0 10 chrX 89582607 89582909 -87391231 + AluSx SINE Alu 1 299 -13 21 0 0 0 chrX 89584026 89584047 -87390093 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 89584674 89584695 -87389445 + AT_rich Low_complexity Low_complexity 1 21 0 768 249 91 87 chrX 89585565 89586026 -87388114 + MLT1J LTR MaLR 5 467 -44 205 308 0 0 chrX 89586089 89586141 -87387999 + L2 LINE L2 3005 3056 -257 765 241 0 64 chrX 89586355 89586542 -87387598 - MER8 DNA MER2_type -64 175 1 479 93 0 13 chrX 89587070 89587145 -87386995 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 11602 180 63 13 chrX 89587844 89592786 -87381354 + L1PB1 LINE L1 1090 6527 -340 243 0 0 0 chrX 89592786 89592813 -87381327 + (CA)n Simple_repeat Simple_repeat 1 27 0 11602 180 63 13 chrX 89592813 89593171 -87380969 + L1PB1 LINE L1 6527 6866 -1 26 0 0 0 chrX 89594318 89594344 -87379796 + AT_rich Low_complexity Low_complexity 1 26 0 271 44 44 0 chrX 89594671 89594716 -87379424 + (GA)n Simple_repeat Simple_repeat 1 47 0 360 0 0 0 chrX 89596507 89596547 -87377593 + (CA)n Simple_repeat Simple_repeat 1 40 0 540 187 0 0 chrX 89598976 89599067 -87375073 - AluJ/FLAM SINE Alu -220 92 2 381 226 191 24 chrX 89600348 89600516 -87373624 + L1ME4a LINE L1 5892 6087 -34 227 329 55 14 chrX 89601804 89601877 -87372263 - L2 LINE L2 -86 3186 3111 3065 119 9 14 chrX 89602471 89602901 -87371239 + MSTA LTR MaLR 1 428 0 416 242 6 0 chrX 89602951 89603054 -87371086 + MIR SINE MIR 79 183 -25 274 290 0 0 chrX 89604036 89604098 -87370042 - tRNA-Ile-ATT tRNA tRNA -15 62 1 881 100 17 0 chrX 89604396 89604516 -87369624 + AluSp/q SINE Alu 178 299 -14 852 127 7 70 chrX 89604603 89604745 -87369395 - FLAM_C SINE Alu 0 133 1 182 133 0 67 chrX 89608371 89608416 -87365724 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 206 277 0 15 chrX 89608769 89608834 -87365306 + CT-rich Low_complexity Low_complexity 2 65 0 252 86 0 0 chrX 89608962 89608997 -87365143 + (TC)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chrX 89611588 89611610 -87362530 + GC_rich Low_complexity Low_complexity 1 22 0 444 328 21 21 chrX 89613379 89613568 -87360572 - MIR3 SINE MIR -6 202 14 273 75 0 0 chrX 89613571 89613611 -87360529 + (TG)n Simple_repeat Simple_repeat 1 40 0 247 235 15 15 chrX 89715803 89715871 -87258269 - MLT1J LTR MaLR -7 504 437 730 259 101 58 chrX 89715897 89716244 -87257896 - MLT1J LTR MaLR -149 362 1 431 284 15 56 chrX 89718574 89718771 -87255369 - MER5A DNA MER1_type 0 189 1 3504 107 13 11 chrX 89718808 89719283 -87254857 + MER41A LTR ERV1 1 479 -75 4159 80 6 0 chrX 89719283 89719833 -87254307 - MER41A LTR ERV1 -1 553 1 3504 107 13 11 chrX 89719833 89719910 -87254230 + MER41A LTR ERV1 479 554 0 800 183 120 42 chrX 89720103 89720344 -87253796 - MIR SINE MIR 0 262 3 3916 129 24 2 chrX 89720530 89721149 -87252991 + MER41B LTR ERV1 3 635 0 366 302 0 0 chrX 89721266 89721362 -87252778 + MER34 LTR ERV1 1 96 -446 1360 221 92 23 chrX 89721369 89721804 -87252336 + LTR48B LTR ERV1 151 615 -29 556 249 49 92 chrX 89722765 89723150 -87250990 + L1ME LINE L1 5435 5804 -317 1527 205 27 127 chrX 89723269 89723907 -87250233 + L1MB7 LINE L1 -246 327 -5953 1675 128 0 0 chrX 89723908 89724134 -87250006 + AluSg/x SINE Alu 73 298 -14 2530 252 64 44 chrX 89724142 89725157 -87248983 + L1MB7 LINE L1 1030 2197 -4366 2201 61 11 4 chrX 89725157 89725472 -87248668 - AluSx SINE Alu 0 317 1 2530 252 64 44 chrX 89725472 89725810 -87248330 + L1MB7 LINE L1 2197 2527 -4036 * 5550 114 34 18 chrX 89725792 89726847 -87247293 + L1PA11 LINE L1 4630 5833 -341 2082 118 4 0 chrX 89726847 89727127 -87247013 + AluSc SINE Alu 1 335 0 403 74 0 0 chrX 89727127 89727181 -87246959 + (TAA)n Simple_repeat Simple_repeat 2 180 0 5550 114 34 18 chrX 89727181 89727528 -87246612 + L1PA11 LINE L1 5833 6173 -1 21 36 0 0 chrX 89727557 89727585 -87246555 + AT_rich Low_complexity Low_complexity 1 28 0 4087 233 28 25 chrX 89727706 89728546 -87245594 + L1MB7 LINE L1 3394 4241 -2141 2739 26 0 0 chrX 89728546 89728850 -87245290 + AluY SINE Alu 8 311 0 4087 233 28 25 chrX 89728850 89729179 -87244961 + L1MB7 LINE L1 4241 4567 -1815 3669 210 39 29 chrX 89729165 89730328 -87243812 + L1MB7 LINE L1 5178 6328 -92 * 1808 41 0 5 chrX 89730328 89730547 -87243593 + AluY SINE Alu 77 294 -17 3669 210 39 29 chrX 89730547 89730563 -87243577 + L1MB7 LINE L1 6328 6342 -78 2205 117 3 3 chrX 89730563 89730871 -87243269 + AluJb SINE Alu 1 308 -4 3669 210 39 29 chrX 89730871 89730911 -87243229 + L1MB7 LINE L1 6342 6405 -15 1036 214 15 10 chrX 89730939 89731145 -87242995 - MIR SINE MIR -41 221 15 5433 52 3 0 chrX 89732207 89732840 -87241300 - L1PA5 LINE L1 0 6154 5520 369 135 0 0 chrX 89732921 89732973 -87241167 + Alu SINE Alu 1 52 -247 752 97 0 0 chrX 89732973 89733066 -87241074 - AluS SINE Alu -217 96 4 2464 46 0 3 chrX 89734616 89734925 -87239215 - AluY SINE Alu 0 308 1 2251 114 0 0 chrX 89735756 89736054 -87238086 - AluSq SINE Alu -15 298 1 791 32 11 0 chrX 89736702 89736796 -87237344 - L1PA8 LINE L1 -6 6166 6072 527 217 153 19 chrX 89739192 89739349 -87234791 + MER3 DNA MER1_type 23 200 -9 1127 8 48 0 chrX 89739817 89739943 -87234197 - L1PA7 LINE L1 -2 6152 6021 2145 101 3 7 chrX 89740073 89740360 -87233780 + AluSx SINE Alu 9 294 -18 665 157 0 33 chrX 89740781 89740902 -87233238 + FRAM SINE Alu 60 176 0 2420 70 0 10 chrX 89740980 89741279 -87232861 + AluY SINE Alu 1 296 -15 2327 57 7 33 chrX 89742442 89742742 -87231398 - AluY SINE Alu -19 292 1 190 286 0 0 chrX 89745694 89745736 -87228404 + L2 LINE L2 3180 3221 -92 434 304 12 36 chrX 89746825 89746993 -87227147 - MIR SINE MIR -16 246 83 21 0 0 0 chrX 89748109 89748130 -87226010 + AT_rich Low_complexity Low_complexity 1 21 0 225 94 0 0 chrX 89748232 89748264 -87225876 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2520 54 0 0 chrX 89748706 89749000 -87225140 - AluY SINE Alu -17 294 1 268 304 83 89 chrX 89749596 89749991 -87224149 - L2 LINE L2 -31 3241 2849 269 87 0 22 chrX 89750144 89750190 -87223950 + (TC)n Simple_repeat Simple_repeat 2 46 0 336 103 0 0 chrX 89750190 89750248 -87223892 + (CA)n Simple_repeat Simple_repeat 1 58 0 277 347 126 0 chrX 89750597 89750692 -87223448 + L2 LINE L2 3150 3256 -16 589 216 67 15 chrX 89750723 89750857 -87223283 + L2 LINE L2 3169 3309 -4 283 200 213 12 chrX 89750874 89750954 -87223186 + L2 LINE L2 3175 3270 -2 2272 98 7 13 chrX 89750972 89751279 -87222861 - AluSg SINE Alu -5 305 1 186 267 0 0 chrX 89751296 89751341 -87222799 + L2 LINE L2 3256 3300 -13 205 204 41 0 chrX 89752388 89752437 -87221703 + GA-rich Low_complexity Low_complexity 4 54 0 210 304 0 25 chrX 89752933 89753012 -87221128 + CT-rich Low_complexity Low_complexity 4 80 0 754 243 6 34 chrX 89753612 89753789 -87220351 - MIR SINE MIR -84 178 7 231 188 0 21 chrX 89755945 89755993 -87218147 - L2 LINE L2 0 3313 3267 476 272 67 39 chrX 89756841 89757021 -87217119 + MIR SINE MIR 35 219 -43 197 333 151 11 chrX 89758917 89759010 -87215130 + MIR SINE MIR 32 137 -71 312 318 83 37 chrX 89759219 89759436 -87214704 - L2 LINE L2 -215 3057 2831 2088 126 0 26 chrX 89759440 89759749 -87214391 + AluSx SINE Alu 1 301 -11 348 298 18 26 chrX 89759811 89759925 -87214215 + L3 LINE CR1 1462 1574 -3 316 363 92 34 chrX 89759927 89760285 -87213855 - L2 LINE L2 -511 2803 2425 422 317 41 45 chrX 89760406 89760696 -87213444 - L2 LINE L2 -1158 2156 1868 202 331 183 25 chrX 89761096 89761495 -87212645 + L2 LINE L2 2249 2710 -604 182 250 0 0 chrX 89761628 89761672 -87212468 - L2 LINE L2 0 3313 3270 396 258 184 12 chrX 89762510 89762673 -87211467 - MIR SINE MIR -49 213 23 236 276 0 0 chrX 89763082 89763140 -87211000 - MIR SINE MIR -21 241 184 459 255 13 33 chrX 89763156 89763309 -87210831 + L1MC4a LINE L1 5833 5982 -1826 631 252 112 47 chrX 89763510 89763724 -87210416 + MIR SINE MIR 21 248 -14 2288 98 10 0 chrX 89763796 89764101 -87210039 - AluSq SINE Alu -5 308 1 4434 133 26 1 chrX 89764126 89764810 -87209330 - L1MA4A LINE L1 0 6303 5603 417 42 56 14 chrX 89764811 89764882 -87209258 + CT-rich Low_complexity Low_complexity 1 74 0 2341 80 0 0 chrX 89764882 89765168 -87208972 - AluSq SINE Alu -27 286 1 1924 89 32 10 chrX 89765170 89765290 -87208850 - L1MA4A LINE L1 -699 5604 5488 2214 123 0 0 chrX 89765290 89765591 -87208549 - AluSx SINE Alu -11 301 1 1924 89 32 10 chrX 89765591 89765783 -87208357 - L1MA4A LINE L1 -815 5488 5292 628 67 0 0 chrX 89765792 89765867 -87208273 - Alu SINE Alu -235 76 2 5266 164 20 6 chrX 89765868 89766829 -87207311 - L1 LINE L1 -814 5332 4359 610 331 108 19 chrX 89766859 89767228 -87206912 - L3 LINE CR1 -1017 560 159 3558 220 66 54 chrX 89768103 89768488 -87205652 - L1ME1 LINE L1 -22 6144 5765 2274 86 0 46 chrX 89768488 89768812 -87205328 + AluSc SINE Alu 1 309 0 3558 220 66 54 chrX 89768812 89769430 -87204710 - L1ME1 LINE L1 -401 5765 5112 2295 76 10 0 chrX 89769430 89769719 -87204421 + AluY SINE Alu 1 292 -19 3558 220 66 54 chrX 89769719 89770085 -87204055 - L1ME1 LINE L1 -1054 5112 4752 555 265 113 0 chrX 89772007 89772158 -87201982 - MIR SINE MIR -58 204 37 1534 161 16 4 chrX 89772204 89772453 -87201687 - L1MC1 LINE L1 -5 6328 6077 1114 220 111 20 chrX 89773998 89774393 -87199747 - L1ME4a LINE L1 -4 6117 5687 1166 181 33 21 chrX 89775689 89775932 -87198208 - MIR SINE MIR -5 257 12 267 31 0 0 chrX 89776268 89776300 -87197840 + (A)n Simple_repeat Simple_repeat 1 32 0 308 269 220 14 chrX 89777478 89777619 -87196521 + MER5B DNA MER1_type 2 171 -7 2303 106 3 0 chrX 89777710 89778012 -87196128 - AluSq SINE Alu -10 303 1 2386 71 3 0 chrX 89779382 89779678 -87194462 - AluY SINE Alu -14 297 1 1224 176 17 17 chrX 89780348 89780581 -87193559 - MIR SINE MIR -28 234 2 273 323 10 0 chrX 89781431 89781530 -87192610 + CT-rich Low_complexity Low_complexity 5 104 0 325 251 362 0 chrX 89781720 89781883 -87192257 + MIR SINE MIR 34 255 -7 393 75 0 0 chrX 89783830 89783883 -87190257 + (CA)n Simple_repeat Simple_repeat 2 54 0 2351 81 0 13 chrX 89784417 89784725 -87189415 - AluSc SINE Alu -5 304 1 1561 279 81 8 chrX 89784825 89785425 -87188715 - L2 LINE L2 0 3313 2674 902 274 212 30 chrX 89785465 89786103 -87188037 - L2 LINE L2 -1133 2181 1428 289 100 0 0 chrX 89786166 89786206 -87187934 + L2 LINE L2 3267 3306 -7 256 218 179 39 chrX 89787452 89787530 -87186610 + L2 LINE L2 3157 3245 -27 466 291 128 0 chrX 89787547 89787695 -87186445 - MIR SINE MIR 0 262 96 317 295 181 50 chrX 89787724 89788348 -87185792 + L2 LINE L2 1542 2247 -1067 199 265 99 74 chrX 89788540 89788661 -87185479 + L2 LINE L2 2929 3050 -222 643 235 26 35 chrX 89789613 89789841 -87184299 + L1MC4a LINE L1 5694 5930 -254 1234 198 33 4 chrX 89789898 89790140 -87184000 - MIR SINE MIR -12 250 2 1781 156 7 23 chrX 89790367 89790668 -87183472 + AluSx SINE Alu 1 296 -16 488 306 14 20 chrX 89790752 89790899 -87183241 + L2 LINE L2 3122 3267 -5 1864 135 40 26 chrX 89791074 89791378 -87182762 - AluJb SINE Alu -4 308 1 194 61 0 30 chrX 89791568 89791601 -87182539 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 787 131 278 0 chrX 89792005 89792181 -87181959 - L1MA4 LINE L1 -4 6296 6072 592 256 94 90 chrX 89792245 89792627 -87181513 + L1MC4a LINE L1 5579 5965 -156 2375 100 0 0 chrX 89792627 89792937 -87181203 - AluSx SINE Alu -2 310 1 592 256 94 90 chrX 89792937 89792999 -87181141 + L1MC4a LINE L1 5965 6025 -96 256 291 101 0 chrX 89793378 89793457 -87180683 - MIR SINE MIR -174 88 2 186 43 0 0 chrX 89796361 89796384 -87177756 + (TTC)n Simple_repeat Simple_repeat 1 23 0 2471 86 0 0 chrX 89796501 89796805 -87177335 - AluSp SINE Alu -9 304 1 1825 165 0 13 chrX 89797031 89797334 -87176806 + AluJo SINE Alu 1 299 -13 2145 78 0 4 chrX 89797334 89797604 -87176536 + AluSq SINE Alu 39 307 -6 288 225 9 18 chrX 89798369 89798480 -87175660 + GA-rich Low_complexity Low_complexity 2 111 0 327 296 57 116 chrX 89799188 89799298 -87174842 + L2 LINE L2 2634 2749 -564 885 169 0 96 chrX 89799298 89799476 -87174664 - FAM SINE Alu -14 161 1 2485 55 0 3 chrX 89799485 89799778 -87174362 - AluY SINE Alu -19 292 1 327 296 57 116 chrX 89799778 89800378 -87173762 + L2 LINE L2 2757 3309 -4 2656 271 96 14 chrX 89800634 89800868 -87173272 + L2 LINE L2 2008 2221 -1092 2232 106 17 0 chrX 89800868 89801170 -87172970 - AluSx SINE Alu -5 307 1 2656 271 96 14 chrX 89801170 89801588 -87172552 + L2 LINE L2 2221 2603 -710 2958 172 40 16 chrX 89801588 89802145 -87171995 + L1MB5 LINE L1 5605 6174 0 2656 271 96 14 chrX 89802145 89802708 -87171432 + L2 LINE L2 2603 3312 -1 212 264 0 19 chrX 89803206 89803259 -87170881 + MIR3 SINE MIR 124 175 -33 247 326 21 0 chrX 89803521 89803616 -87170524 + L1ME4a LINE L1 5771 5867 -1941 2876 207 25 73 chrX 89803630 89804560 -87169580 - L1ME1 LINE L1 0 6166 5272 2866 207 58 127 chrX 89805851 89806038 -87168102 + HAL1b LINE L1 143 341 -1007 2493 62 0 3 chrX 89806038 89806343 -87167797 - AluY SINE Alu -7 304 1 2866 207 58 127 chrX 89806343 89807025 -87167115 + HAL1b LINE L1 341 1069 -279 2354 118 0 0 chrX 89807025 89807338 -87166802 + AluSq SINE Alu 1 313 0 2866 207 58 127 chrX 89807338 89807361 -87166779 + HAL1b LINE L1 1069 1092 -256 2724 140 36 40 chrX 89807361 89807423 -87166717 + L1MB8 LINE L1 5652 5713 -465 2392 80 0 22 chrX 89807423 89807734 -87166406 - AluSc SINE Alu -5 304 1 2724 140 36 40 chrX 89807734 89808200 -87165940 + L1MB8 LINE L1 5713 6178 0 2866 207 58 127 chrX 89808200 89808532 -87165608 + HAL1b LINE L1 1092 1284 -64 529 167 80 33 chrX 89808618 89808768 -87165372 + L1ME4a LINE L1 5962 6118 -3 477 285 66 20 chrX 89810621 89810772 -87163368 - L2 LINE L2 -8 3264 3107 29 37 0 19 chrX 89810980 89811011 -87163129 + AT_rich Low_complexity Low_complexity 1 32 -21 1568 179 0 43 chrX 89811011 89811313 -87162827 + AluJb SINE Alu 1 289 -23 29 37 0 19 chrX 89811313 89811335 -87162805 + AT_rich Low_complexity Low_complexity 32 53 0 518 272 133 25 chrX 89811481 89811852 -87162288 + L1MC4a LINE L1 5568 5991 -130 886 167 8 0 chrX 89812073 89812205 -87161935 - FLAM_A SINE Alu 0 133 1 376 381 32 26 chrX 89812380 89812692 -87161448 - L2 LINE L2 -774 2540 2227 242 337 10 31 chrX 89812995 89813093 -87161047 + L2 LINE L2 3184 3279 -34 829 243 70 5 chrX 89813147 89813361 -87160779 - MIR SINE MIR -14 248 21 221 328 179 31 chrX 89813761 89814346 -87159794 + L2 LINE L2 805 1476 -1838 1047 257 100 52 chrX 89814502 89815330 -87158810 + L1MEc LINE L1 2156 2983 -3232 2381 28 28 7 chrX 89815891 89816174 -87157966 + L1PA7 LINE L1 5866 6154 0 370 284 60 6 chrX 89816230 89816413 -87157727 + L1M4 LINE L1 2477 2669 -3477 336 158 70 0 chrX 89816613 89816670 -87157470 + MIR SINE MIR 37 97 -165 320 306 81 9 chrX 89816902 89817013 -87157127 + L2 LINE L2 3147 3265 -7 1023 215 27 69 chrX 89817130 89817152 -87156988 + MIR SINE MIR 14 35 -227 1960 122 6 32 chrX 89817152 89817463 -87156677 + AluSx SINE Alu 1 303 -9 1023 215 27 69 chrX 89817463 89817700 -87156440 + MIR SINE MIR 35 262 0 496 103 103 0 chrX 89817848 89817935 -87156205 - L1PB3 LINE L1 0 6154 6059 6236 228 68 39 chrX 89818482 89820282 -87153858 + L1ME1 LINE L1 68 1920 -4476 2027 185 149 42 chrX 89820274 89821101 -87153039 + L1ME1 LINE L1 4769 5738 -497 * 2196 112 3 3 chrX 89821102 89821405 -87152735 + AluSq SINE Alu 1 303 -10 1206 137 0 0 chrX 89821406 89821574 -87152566 + AluSg/x SINE Alu 134 301 -11 1988 191 36 54 chrX 89821575 89822041 -87152099 + L1ME1 LINE L1 5732 6189 -46 594 187 101 0 chrX 89821938 89822077 -87152063 + L1MA10 LINE L1 6244 6396 -7 * 2523 54 7 0 chrX 89822203 89822498 -87151642 - AluY SINE Alu -14 297 1 1078 209 205 32 chrX 89822643 89822960 -87151180 + Charlie7 DNA MER1_type 2095 2508 -104 2037 146 0 7 chrX 89822960 89823262 -87150878 - AluJb SINE Alu -12 300 1 1078 209 205 32 chrX 89823262 89823379 -87150761 + Charlie7 DNA MER1_type 2508 2604 -8 1678 151 68 27 chrX 89823587 89823697 -87150443 + AluJb SINE Alu 1 105 -207 195 69 0 0 chrX 89823697 89823726 -87150414 + (CA)n Simple_repeat Simple_repeat 2 30 0 1678 151 68 27 chrX 89823726 89823907 -87150233 + AluJb SINE Alu 105 304 -8 2470 80 3 3 chrX 89824107 89824420 -87149720 + AluSp SINE Alu 1 313 0 231 36 0 0 chrX 89824486 89824514 -87149626 + (A)n Simple_repeat Simple_repeat 1 28 0 353 332 116 71 chrX 89825083 89825505 -87148635 - L2 LINE L2 -26 3246 2806 787 216 82 41 chrX 89825836 89826081 -87148059 + MIR SINE MIR 1 255 -7 2120 118 3 0 chrX 89826739 89827035 -87147105 - AluSg SINE Alu -13 297 1 1104 188 84 36 chrX 89827082 89827332 -87146808 - MIR SINE MIR 0 262 1 24 0 0 0 chrX 89828790 89828814 -87145326 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chrX 89828842 89828896 -87145244 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chrX 89829023 89829059 -87145081 + AT_rich Low_complexity Low_complexity 1 36 0 606 198 32 0 chrX 89829343 89829469 -87144671 + L2 LINE L2 3182 3311 -2 631 290 185 55 chrX 89829501 89829733 -87144407 + L2 LINE L2 796 996 -2318 2285 110 13 0 chrX 89829733 89830041 -87144099 - AluSx SINE Alu 0 312 1 631 290 185 55 chrX 89830041 89830602 -87143538 + L2 LINE L2 996 1752 -1562 243 0 0 0 chrX 89830602 89830629 -87143511 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 631 290 185 55 chrX 89830629 89830850 -87143290 + L2 LINE L2 1752 1943 -1371 250 317 91 25 chrX 89830888 89831087 -87143053 + L1ME4a LINE L1 5614 5825 -1983 3269 91 33 17 chrX 89831088 89831807 -87142333 + SVA Other Other 58 866 -520 6595 66 5 57 chrX 89831818 89832828 -87141312 + SVA Other Other 430 1386 0 338 136 68 0 chrX 89834201 89834260 -87139880 - L1MA8 LINE L1 -12 6279 6217 973 191 50 0 chrX 89834727 89834926 -87139214 - L1PB4 LINE L1 -2 6154 5946 730 282 113 23 chrX 89835171 89835589 -87138551 + L1ME LINE L1 5256 5707 -463 1459 268 22 30 chrX 89835594 89836094 -87138046 - L2 LINE L2 -719 2595 2100 2456 71 0 0 chrX 89836695 89836990 -87137150 + AluY SINE Alu 1 295 -16 349 305 146 9 chrX 89837188 89837421 -87136719 - L2 LINE L2 0 3313 3049 294 267 0 100 chrX 89837726 89837876 -87136264 - L2 LINE L2 -219 3053 2919 379 246 95 0 chrX 89838402 89838528 -87135612 + MIR SINE MIR 93 230 -32 539 229 143 61 chrX 89840549 89840780 -87133360 + L1ME LINE L1 5385 5634 -487 1105 296 124 29 chrX 89840785 89841521 -87132619 + L2 LINE L2 1615 2420 -894 5914 93 29 34 chrX 89841535 89841736 -87132404 + Tigger1 DNA MER2_type 1550 1751 -667 2505 65 0 0 chrX 89841736 89842030 -87132110 + AluY SINE Alu 1 294 -17 5914 93 29 34 chrX 89842030 89842192 -87131948 + Tigger1 DNA MER2_type 1751 1912 -506 2452 57 3 7 chrX 89842192 89842490 -87131650 + AluY SINE Alu 1 297 -14 5914 93 29 34 chrX 89842490 89842821 -87131319 + Tigger1 DNA MER2_type 1912 2241 -177 1734 141 13 27 chrX 89842821 89843120 -87131020 - AluJo SINE Alu -17 295 1 5914 93 29 34 chrX 89843120 89843297 -87130843 + Tigger1 DNA MER2_type 2241 2418 0 239 262 57 49 chrX 89843312 89843331 -87130809 + L1ME4a LINE L1 5988 6005 -116 2413 64 0 0 chrX 89843331 89843613 -87130527 + AluY SINE Alu 9 290 -21 273 75 0 0 chrX 89843613 89843653 -87130487 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 239 262 57 49 chrX 89843653 89843754 -87130386 + L1ME4a LINE L1 6004 6110 -11 22 0 0 0 chrX 89843788 89843810 -87130330 + AT_rich Low_complexity Low_complexity 1 22 0 684 65 140 0 chrX 89843949 89844070 -87130070 + L1PA8 LINE L1 6054 6187 0 381 322 58 0 chrX 89845130 89845301 -87128839 - L1ME3A LINE L1 -239 5931 5751 806 171 117 63 chrX 89845498 89845703 -87128437 - MER20 DNA MER1_type -3 216 1 396 306 32 99 chrX 89845850 89846223 -87127917 - L2 LINE L2 -101 3171 2824 2632 154 49 5 chrX 89846223 89846670 -87127470 - MLT1C LTR MaLR 0 467 1 3018 179 18 5 chrX 89846809 89847362 -87126778 - L1MB7 LINE L1 -358 5826 5267 207 345 62 10 chrX 89847729 89847923 -87126217 + L2 LINE L2 1918 2121 -1193 191 262 196 28 chrX 89847969 89848076 -87126064 - L2 LINE L2 -13 3300 3176 225 159 0 0 chrX 89848137 89848181 -87125959 + (CA)n Simple_repeat Simple_repeat 2 45 0 624 227 184 0 chrX 89848181 89848344 -87125796 - MIR SINE MIR -69 193 1 252 280 19 9 chrX 89848353 89848460 -87125680 + (TA)n Simple_repeat Simple_repeat 2 109 0 231 275 175 0 chrX 89849670 89849750 -87124390 - L2 LINE L2 -243 3070 2977 191 362 118 7 chrX 89849822 89849974 -87124166 - L2 LINE L2 -493 2821 2653 728 331 155 14 chrX 89849999 89850619 -87123521 + L2 LINE L2 2224 2930 -384 977 222 76 0 chrX 89851064 89851262 -87122878 + MER20 DNA MER1_type 7 219 0 501 194 0 0 chrX 89851631 89851734 -87122406 - MIR SINE MIR -61 201 99 2395 79 0 0 chrX 89852163 89852454 -87121686 - AluSg SINE Alu -19 291 1 380 207 156 22 chrX 89854667 89854802 -87119338 + L1ME4a LINE L1 5956 6108 -13 766 265 100 47 chrX 89855000 89855491 -87118649 - LTR33 LTR ERVL -2 519 3 2781 176 20 7 chrX 89855511 89856051 -87118089 - L1MA10 LINE L1 -7 6327 5781 5549 128 14 30 chrX 89856051 89856688 -87117452 + Tigger7 DNA MER2_type 2 623 -1864 2201 119 3 0 chrX 89856688 89856998 -87117142 + AluSx SINE Alu 1 311 -1 5549 128 14 30 chrX 89856998 89857212 -87116928 + Tigger7 DNA MER2_type 623 839 -1648 1754 89 16 8 chrX 89857211 89857469 -87116671 + Tigger7 DNA MER2_type 2227 2486 -1 * 3279 143 20 18 chrX 89857469 89857764 -87116376 - L1MA10 LINE L1 -528 5784 5491 2160 111 4 0 chrX 89857764 89858082 -87116058 - AluSx SINE Alu 0 320 2 3279 143 20 18 chrX 89858082 89858676 -87115464 - L1MA10 LINE L1 -821 5491 4895 352 353 57 60 chrX 89859021 89859585 -87114555 + HERVL LTR ERVL 784 1345 -4309 1542 53 0 0 chrX 89860107 89860297 -87113843 - L1PA6 LINE L1 -5 6149 5960 2402 226 44 9 chrX 89861209 89861359 -87112781 + L1MC4 LINE L1 6482 6625 -1417 2448 69 0 0 chrX 89861359 89861649 -87112491 + AluY SINE Alu 1 290 -21 198 0 0 0 chrX 89861649 89861671 -87112469 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 2402 226 44 9 chrX 89861671 89861717 -87112423 + L1MC4 LINE L1 6625 6668 -1374 279 0 0 0 chrX 89861717 89861748 -87112392 + (CA)n Simple_repeat Simple_repeat 2 32 0 2402 226 44 9 chrX 89861748 89862116 -87112024 + L1MC4 LINE L1 6668 7068 -974 1391 157 5 0 chrX 89862116 89862339 -87111801 - Tigger5 DNA MER2_type 0 2323 2100 1293 224 123 0 chrX 89862338 89862606 -87111534 - Tigger5 DNA MER2_type -2022 301 1 * 5297 145 6 5 chrX 89862607 89863412 -87110728 - ERVL-B3 LTR ERVL -323 5441 4636 407 166 0 4 chrX 89863412 89863491 -87110649 + L1PA16 LINE L1 5799 5875 -256 2218 151 11 0 chrX 89863494 89863845 -87110295 - ERVL-B3 LTR ERVL -1761 4003 3649 * 7303 128 14 3 chrX 89863841 89864882 -87109258 - ERVL-B3 LTR ERVL -3037 2727 1675 6727 169 19 41 chrX 89864882 89865627 -87108513 + L1PB1 LINE L1 3644 4404 -1747 306 0 0 0 chrX 89865627 89865661 -87108479 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6727 169 19 41 chrX 89865661 89865722 -87108418 + L1PB1 LINE L1 4404 4465 -1686 2562 84 0 0 chrX 89865722 89866033 -87108107 + AluY SINE Alu 1 311 0 6727 169 19 41 chrX 89866033 89866191 -87107949 + L1PB1 LINE L1 4465 4625 -1526 7778 28 0 0 chrX 89866191 89867464 -87106676 - L1PA4 LINE L1 -3 6152 4881 6727 169 19 41 chrX 89867464 89868878 -87105262 + L1PB1 LINE L1 4625 5965 -186 2117 123 0 0 chrX 89868878 89869189 -87104951 + AluSx SINE Alu 1 311 0 6727 169 19 41 chrX 89869189 89869367 -87104773 + L1PB1 LINE L1 5965 6145 -6 9058 186 42 17 chrX 89869388 89871045 -87103095 - ERVL-B3 LTR ERVL -4065 1699 2 3348 161 9 28 chrX 89871046 89871089 -87103051 - MLT2B3 LTR ERVL 0 554 512 413 65 0 16 chrX 89871089 89871151 -87102989 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 3348 161 9 28 chrX 89871151 89871671 -87102469 - MLT2B3 LTR ERVL -42 512 2 412 347 92 26 chrX 89871691 89871962 -87102178 - HERVL LTR ERVL -4008 1646 1358 26 0 0 0 chrX 89871976 89872002 -87102138 + AT_rich Low_complexity Low_complexity 1 26 0 1631 185 74 59 chrX 89872057 89872478 -87101662 - L1MC4 LINE L1 -142 7900 7474 1093 198 26 1 chrX 89872479 89872823 -87101317 + MLT2F LTR ERVL 1 398 -265 641 137 0 0 chrX 89872843 89872938 -87101202 + AluSg/x SINE Alu 213 307 -5 2530 53 0 16 chrX 89872947 89873250 -87100890 + AluY SINE Alu 1 298 -13 466 131 0 101 chrX 89873250 89873349 -87100791 - L1M1 LINE L1 -4437 3128 3040 * 12389 153 30 16 chrX 89873347 89875372 -87098768 - L1M1 LINE L1 -5501 2064 13 505 180 9 0 chrX 89875380 89875491 -87098649 - L1M4c LINE L1 -4172 2562 2451 3578 225 35 32 chrX 89875588 89876747 -87097393 - L1M4c LINE L1 -4516 2137 1150 254 250 57 107 chrX 89877035 89877175 -87096965 - L1M4c LINE L1 -5315 1338 1206 189 0 0 0 chrX 89877232 89877253 -87096887 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 9956 89 14 0 chrX 89877253 89879398 -87094742 - L1PA8 LINE L1 -18 6154 3985 9978 184 14 9 chrX 89879398 89881619 -87092521 - L1 LINE L1 -1827 4555 2320 5262 126 28 6 chrX 89881615 89882504 -87091636 - L1PA16 LINE L1 -2 6164 5256 * 308 234 13 13 chrX 89882502 89882675 -87091465 - L1 LINE L1 -4049 2333 2161 * 1135 158 0 0 chrX 89882677 89882841 -87091299 + FAM SINE Alu 1 164 -11 2336 98 2 117 chrX 89882865 89883326 -87090814 + L1PB2 LINE L1 5743 6150 -1 1097 176 0 0 chrX 89883352 89883522 -87090618 + AluJo SINE Alu 118 287 -25 31 0 0 0 chrX 89883522 89883553 -87090587 + AT_rich Low_complexity Low_complexity 1 31 0 3804 219 37 16 chrX 89883618 89885045 -87089095 - L1 LINE L1 -4298 2084 797 13600 205 7 27 chrX 89885046 89888216 -87085924 - L1P5 LINE L1 -510 6283 3252 2238 91 3 0 chrX 89888216 89888531 -87085609 - AluSp SINE Alu 0 316 1 13600 205 7 27 chrX 89888531 89889553 -87084587 - L1P5 LINE L1 -3541 3252 2212 1978 91 0 26 chrX 89889561 89889826 -87084314 - AluSq SINE Alu -52 261 4 5173 149 52 15 chrX 89889845 89891127 -87083013 - L1MC2 LINE L1 -8 6336 5009 1181 235 27 24 chrX 89891129 89891423 -87082717 + MLT1A2 LTR MaLR 80 374 0 1092 172 9 27 chrX 89891423 89891644 -87082496 - L1MCb LINE L1 -4951 1094 878 647 118 0 9 chrX 89891654 89891764 -87082376 + L1MD3 LINE L1 6866 6974 -1021 340 179 32 74 chrX 89891804 89891899 -87082241 + MLT1F1 LTR MaLR 35 125 -442 2404 156 109 38 chrX 89891900 89892452 -87081688 + L1MC3 LINE L1 7189 7779 -6 30 27 0 0 chrX 89892476 89892513 -87081627 + AT_rich Low_complexity Low_complexity 1 37 0 240 338 88 0 chrX 89892516 89892596 -87081544 + MIR SINE MIR 54 140 -122 227 240 0 0 chrX 89892614 89892664 -87081476 + L1M3d LINE L1 1 50 -5841 1146 148 129 50 chrX 89892674 89892991 -87081149 + MER4A LTR ERV1 1 342 -322 478 187 284 13 chrX 89893013 89893238 -87080902 + MER4C LTR ERV1 159 444 -21 590 184 77 83 chrX 89893257 89893744 -87080396 + MER4C-int LTR ERV1 1 606 -5992 540 89 0 0 chrX 89893748 89893827 -87080313 + (TG)n Simple_repeat Simple_repeat 2 80 0 280 312 29 73 chrX 89893895 89894100 -87080040 + MER4B-int LTR ERV1 381 576 -6182 250 182 0 0 chrX 89894224 89894268 -87079872 + MER4B-int LTR ERV1 751 794 -5804 920 112 0 13 chrX 89894548 89894700 -87079440 - LTR7 LTR ERV1 0 450 301 3376 112 14 11 chrX 89894719 89895273 -87078867 - HERVH LTR ERV1 -1 7712 7157 2182 154 19 5 chrX 89895266 89895687 -87078453 - HERVH LTR ERV1 -1697 6016 5590 * 9345 112 15 43 chrX 89895678 89897264 -87076876 - HERVH LTR ERV1 -2564 5149 3608 * 9455 134 5 28 chrX 89897256 89898917 -87075223 - HERVH LTR ERV1 -5290 2423 801 1898 167 44 35 chrX 89898983 89899438 -87074702 - HERVH LTR ERV1 -7254 459 1 1974 94 245 6 chrX 89899438 89899801 -87074339 - LTR7 LTR ERV1 0 450 1 463 254 109 55 chrX 89950217 89950382 -87023758 - MIR SINE MIR -78 184 11 1895 172 3 10 chrX 89950455 89950622 -87023518 - AluJo SINE Alu -12 300 134 2391 101 0 0 chrX 89950622 89950929 -87023211 - AluSx SINE Alu -3 309 3 1895 172 3 10 chrX 89950929 89951063 -87023077 - AluJo SINE Alu -178 134 1 2400 106 0 0 chrX 89951611 89951923 -87022217 - AluSx SINE Alu 0 312 1 1840 164 4 0 chrX 89952301 89952628 -87021512 + AluJb SINE Alu 1 328 0 2300 95 3 0 chrX 89953340 89953634 -87020506 + AluSg1 SINE Alu 1 295 -14 392 215 0 65 chrX 89954452 89954517 -87019623 + MER96B DNA MER1_type? 1 60 -357 2182 93 0 32 chrX 89954517 89954827 -87019313 + AluSx SINE Alu 1 300 -12 392 215 0 65 chrX 89954827 89954854 -87019286 + MER96B DNA MER1_type? 60 87 -330 1750 140 4 8 chrX 89954914 89955178 -87018962 - AluJb SINE Alu -16 296 34 1001 133 0 14 chrX 89955178 89955321 -87018819 - AluJo SINE Alu -171 141 1 617 228 99 90 chrX 89955321 89955633 -87018507 + MER96B DNA MER1_type? 103 417 0 367 269 87 32 chrX 89955823 89956076 -87018064 + L1M4 LINE L1 3052 3318 -2828 2340 96 3 0 chrX 89956085 89956377 -87017763 - AluSg SINE Alu -17 293 1 22 35 0 0 chrX 89956387 89956416 -87017724 + AT_rich Low_complexity Low_complexity 1 29 0 1207 90 0 38 chrX 89956416 89956627 -87017513 + AluSq SINE Alu 3 304 -9 939 168 67 0 chrX 89956639 89956788 -87017352 + FRAM SINE Alu 1 159 -17 399 177 71 35 chrX 89956788 89956901 -87017239 + L1MC4a LINE L1 5150 5266 -880 * 1383 161 19 76 chrX 89956897 89957175 -87016965 + L1MB8 LINE L1 5881 6140 -38 2268 112 3 0 chrX 89957175 89957480 -87016660 - AluSx SINE Alu -5 307 2 1383 161 19 76 chrX 89957480 89957517 -87016623 + L1MB8 LINE L1 6140 6178 0 1475 280 59 35 chrX 89957680 89958220 -87015920 + L1MC4a LINE L1 5313 5865 -1943 321 138 0 0 chrX 89958221 89958279 -87015861 - L1MB7 LINE L1 0 6184 6127 557 235 9 17 chrX 89958279 89958394 -87015746 - FLAM_A SINE Alu -18 124 11 1915 137 7 23 chrX 89958432 89958732 -87015408 + AluJb SINE Alu 1 295 -17 964 207 0 0 chrX 89958769 89958933 -87015207 + FRAM SINE Alu 2 165 -1 1746 181 3 14 chrX 89959171 89959464 -87014676 - AluJo SINE Alu -22 290 1 2272 109 30 0 chrX 89959498 89959800 -87014340 - AluSx SINE Alu -1 311 1 506 185 0 0 chrX 89960068 89960149 -87013991 + Tigger3b DNA MER2_type 1 81 -1150 2274 105 3 10 chrX 89960149 89960453 -87013687 + AluSx SINE Alu 1 302 -10 1882 14 0 0 chrX 89960453 89960664 -87013476 - L1PA2 LINE L1 -292 5863 5653 * 2612 52 38 3 chrX 89960601 89960944 -87013196 + L1PA3 LINE L1 5797 6151 -4 2629 106 37 68 chrX 89960951 89961398 -87012742 + Tigger3b DNA MER2_type 65 499 -2529 1763 147 0 0 chrX 89961398 89961656 -87012484 - AluJo SINE Alu -52 260 3 692 225 0 0 chrX 89961671 89961800 -87012340 - FLAM_A SINE Alu -1 132 4 268 132 0 0 chrX 89961837 89961875 -87012265 - FLAM SINE Alu -10 123 86 1667 153 41 0 chrX 89961881 89962149 -87011991 + Tigger3b DNA MER2_type 953 1231 0 363 237 85 25 chrX 89962168 89962286 -87011854 + L1ME LINE L1 5513 5637 -484 2299 93 7 0 chrX 89962850 89963140 -87011000 - AluSx SINE Alu -20 292 1 1251 100 0 0 chrX 89963573 89963733 -87010407 + AluSg/x SINE Alu 145 304 -8 1276 237 94 23 chrX 89964225 89964618 -87009522 - MER74B LTR ERVL -74 548 128 2093 91 4 7 chrX 89964625 89964900 -87009240 - AluSx SINE Alu -8 304 31 348 289 202 30 chrX 89965077 89965413 -87008727 + L2 LINE L2 2277 2670 -644 667 162 26 0 chrX 89965413 89965530 -87008610 + FLAM_A SINE Alu 6 125 -17 2064 122 0 30 chrX 89965610 89965905 -87008235 - AluSx SINE Alu -26 286 1 191 350 72 0 chrX 89965986 89966083 -87008057 + L2 LINE L2 2871 2974 -298 1329 151 30 9 chrX 89966224 89966456 -87007684 - Tigger1 DNA MER2_type -8 2410 2174 1886 171 0 0 chrX 89966456 89966749 -87007391 - AluJo SINE Alu -19 293 1 2285 98 0 28 chrX 89967014 89967331 -87006809 - AluSx SINE Alu -4 308 1 2026 110 0 14 chrX 89967361 89967642 -87006498 - AluSx SINE Alu -2 310 34 244 264 168 20 chrX 89967775 89967866 -87006274 - L1MC4 LINE L1 -312 7730 7654 2153 119 0 10 chrX 89967866 89968159 -87005981 - AluSx SINE Alu -22 290 1 244 264 168 20 chrX 89968159 89968264 -87005876 - L1MC4 LINE L1 -388 7654 7505 612 184 39 0 chrX 89968266 89968369 -87005771 - MER81 DNA DNA 0 114 8 2402 106 3 0 chrX 89968469 89968781 -87005359 + AluSp SINE Alu 1 313 0 322 155 3 87 chrX 89968827 89968918 -87005222 + AluJb SINE Alu 44 106 -196 261 0 0 0 chrX 89968977 89969006 -87005134 + (TTG)n Simple_repeat Simple_repeat 2 30 0 299 173 0 0 chrX 89969051 89969103 -87005037 + AluJb SINE Alu 85 136 -166 1364 154 6 122 chrX 89969104 89969453 -87004687 + AluJo SINE Alu 3 314 0 515 273 86 55 chrX 89969469 89969620 -87004520 - L1MC4 LINE L1 -589 7453 7289 2400 96 0 3 chrX 89969620 89969921 -87004219 + AluSq SINE Alu 1 300 -13 515 273 86 55 chrX 89969921 89970025 -87004115 - L1MC4 LINE L1 -753 7289 7190 29 0 0 0 chrX 89970025 89970054 -87004086 + AT_rich Low_complexity Low_complexity 1 29 0 1588 192 0 20 chrX 89970054 89970351 -87003789 + AluJb SINE Alu 1 291 -21 2361 97 3 0 chrX 89970473 89970772 -87003368 - AluSq SINE Alu -13 300 1 2403 139 47 68 chrX 89970935 89971402 -87002738 + LTR32 LTR ERVL 15 471 0 1169 188 56 22 chrX 89971414 89971734 -87002406 - L1MC4 LINE L1 -938 7104 6774 1724 181 3 3 chrX 89971734 89972033 -87002107 + AluJo SINE Alu 1 299 -13 491 168 48 80 chrX 89972033 89972158 -87001982 - MER5B DNA MER1_type -54 124 4 837 196 71 0 chrX 89972176 89972344 -87001796 + MER5A DNA MER1_type 10 189 0 560 247 76 0 chrX 89972358 89972516 -87001624 - MER5B DNA MER1_type -6 172 3 2356 97 0 3 chrX 89972848 89973148 -87000992 + AluSq SINE Alu 1 299 -14 788 134 0 64 chrX 89973335 89973506 -87000634 - MER5B DNA MER1_type -2 176 17 610 264 17 17 chrX 89973535 89973709 -87000431 + MER5B DNA MER1_type 3 176 -2 457 323 30 8 chrX 89974292 89974425 -86999715 + L2 LINE L2 3113 3248 -24 736 278 4 56 chrX 89974430 89974696 -86999444 + MIR SINE MIR 2 253 -9 1323 105 0 0 chrX 89974696 89974868 -86999272 - AluSg/x SINE Alu -11 299 128 2453 90 0 16 chrX 89974985 89975297 -86998843 - AluSx SINE Alu -5 307 1 1057 204 24 24 chrX 89975760 89976015 -86998125 + L1MD3 LINE L1 7731 7985 -10 1274 162 14 0 chrX 89976339 89976555 -86997585 - AluJo SINE Alu -9 303 85 2853 116 40 2 chrX 89976715 89977164 -86996976 - L1MA4 LINE L1 -6 6294 5829 302 234 104 65 chrX 89977393 89977547 -86996593 - L1ME4a LINE L1 -176 5945 5786 863 227 0 0 chrX 89978335 89978498 -86995642 + FRAM SINE Alu 1 163 -3 399 286 29 14 chrX 89979271 89979411 -86994729 - MIR SINE MIR 0 262 121 683 255 0 16 chrX 89979991 89980175 -86993965 + MIR3 SINE MIR 14 194 -14 539 288 56 13 chrX 89980368 89980601 -86993539 + MIR SINE MIR 6 248 -14 2115 113 28 0 chrX 89980679 89980963 -86993177 - AluSx SINE Alu -20 292 1 1383 154 145 44 chrX 89981101 89981445 -86992695 - L1MA4 LINE L1 -11 6289 5911 557 256 25 49 chrX 89981445 89981596 -86992544 + MIR SINE MIR 61 208 -54 2284 51 22 0 chrX 89981596 89981895 -86992245 + AluY SINE Alu 1 305 0 557 256 25 49 chrX 89981895 89981945 -86992195 + MIR SINE MIR 208 258 -4 1331 122 43 26 chrX 89981968 89982198 -86991942 + MER46A DNA MER2_type 2 235 -1 2472 68 0 0 chrX 89983645 89983940 -86990200 - AluSc SINE Alu -14 295 1 724 282 28 35 chrX 89984062 89984381 -86989759 - L1ME4a LINE L1 -206 5915 5599 300 36 18 36 chrX 89984388 89984444 -86989696 + (TA)n Simple_repeat Simple_repeat 2 56 0 375 290 10 0 chrX 89986100 89986200 -86987940 + MIR SINE MIR 82 182 -80 212 365 83 57 chrX 89988084 89988385 -86985755 + L2 LINE L2 2914 3222 -50 208 214 408 0 chrX 89988557 89988655 -86985485 + L2 LINE L2 3163 3300 -13 2204 101 0 74 chrX 89988831 89989169 -86984971 + AluSq SINE Alu 1 313 0 2374 85 0 3 chrX 89989613 89989906 -86984234 + AluSx SINE Alu 1 292 -20 214 315 41 0 chrX 89990119 89990192 -86983948 + L2 LINE L2 3179 3254 -59 287 271 78 104 chrX 89990193 89990385 -86983755 + MER5A DNA MER1_type 2 188 -1 206 271 0 0 chrX 89990410 89990458 -86983682 - MER5A DNA MER1_type -14 175 128 933 151 0 50 chrX 89990466 89990625 -86983515 + AluJb SINE Alu 153 303 -9 214 203 165 13 chrX 89990630 89990709 -86983431 + MER5B DNA MER1_type 59 149 -29 348 277 24 33 chrX 89990716 89990760 -86983380 - MER5B DNA MER1_type -3 186 143 351 0 0 0 chrX 89990760 89990799 -86983341 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1954 101 0 4 chrX 89990803 89991061 -86983079 - AluSq SINE Alu -56 257 1 348 277 24 33 chrX 89991061 89991182 -86982958 - MER5B DNA MER1_type -49 140 2 13048 171 38 13 chrX 89991285 89991446 -86982694 + L1MA3 LINE L1 2 157 -7408 1853 144 13 30 chrX 89991446 89991744 -86982396 - AluJb SINE Alu -15 297 5 13048 171 38 13 chrX 89991744 89993811 -86980329 + L1MA3 LINE L1 157 2286 -5279 5080 125 37 41 chrX 89993810 89995115 -86979025 + L1MA3 LINE L1 2820 4125 -3440 * 4886 114 34 29 chrX 89995117 89995589 -86978551 + L1MA3 LINE L1 6915 7394 -330 2542 84 0 0 chrX 89995589 89995900 -86978240 + AluSx SINE Alu 1 311 -1 4886 114 34 29 chrX 89995900 89996228 -86977912 + L1MA3 LINE L1 7394 7719 -5 1949 107 57 4 chrX 89996372 89996653 -86977487 + AluSq SINE Alu 1 296 -17 219 247 27 14 chrX 89996990 89997063 -86977077 - MER5B DNA MER1_type -1 177 104 2236 119 0 3 chrX 89997337 89997648 -86976492 + AluSx SINE Alu 2 311 -1 627 320 66 10 chrX 89998035 89998338 -86975802 - L2 LINE L2 -431 2883 2564 248 137 20 0 chrX 89998867 89998918 -86975222 + GA-rich Low_complexity Low_complexity 2 53 0 21 36 0 0 chrX 89999823 89999851 -86974289 + GC_rich Low_complexity Low_complexity 1 28 0 2824 96 29 79 chrX 89999902 90000670 -86973470 + SVA Other Other 393 868 -592 1844 90 8 81 chrX 90000683 90001151 -86972989 + SVA Other Other 433 866 -520 6755 60 14 52 chrX 90001168 90002160 -86971980 + SVA Other Other 433 1386 0 23 68 0 0 chrX 90002261 90002305 -86971835 + AT_rich Low_complexity Low_complexity 1 44 0 187 217 0 22 chrX 90002613 90002659 -86971481 - MIR3 SINE MIR -11 197 153 * 207 233 17 33 chrX 90002635 90002695 -86971445 - L3 LINE CR1 -28 1549 1491 185 138 0 0 chrX 90002715 90002744 -86971396 + MER5B DNA MER1_type 132 160 -18 1413 154 65 2 chrX 90002800 90003112 -86971028 - L1MC/D LINE L1 -441 5743 5399 1238 165 57 26 chrX 90003112 90003342 -86970798 - MER8 DNA MER2_type -2 237 1 855 268 27 0 chrX 90004368 90004592 -86969548 - MIR SINE MIR -10 252 23 1871 167 116 9 chrX 90004688 90004908 -86969232 - L1MC3 LINE L1 0 7995 7800 1812 167 7 10 chrX 90004908 90005213 -86968927 - AluJo SINE Alu -8 304 1 1871 167 116 9 chrX 90005213 90005494 -86968646 - L1MC3 LINE L1 -195 7800 7181 228 309 11 11 chrX 90005494 90005588 -86968552 - MLT1F1 LTR MaLR -450 117 24 1030 139 74 19 chrX 90005588 90005804 -86968336 - L1MC3 LINE L1 -700 7085 6858 2137 127 7 0 chrX 90005809 90006108 -86968032 - AluSx SINE Alu -11 301 1 2284 108 3 6 chrX 90006251 90006565 -86967575 - AluSq SINE Alu 0 313 1 749 192 126 0 chrX 90006569 90006720 -86967420 + MER58C DNA MER1_type 44 213 -2 344 250 0 0 chrX 90006722 90006798 -86967342 - MER94 DNA DNA -54 80 5 2014 133 111 40 chrX 90007224 90007570 -86966570 - MSTA LTR MaLR 0 428 49 2320 99 3 0 chrX 90007570 90007863 -86966277 - AluSq SINE Alu -19 294 1 2014 133 111 40 chrX 90007863 90007914 -86966226 - MSTA LTR MaLR -379 49 3 9763 157 16 12 chrX 90007916 90009558 -86964582 - MSTB-int LTR MaLR 0 1651 2 2154 182 92 0 chrX 90009559 90009949 -86964191 - MSTB LTR MaLR 0 426 1 2456 73 0 25 chrX 90010355 90010669 -86963471 - AluY SINE Alu -5 306 1 718 185 0 22 chrX 90010844 90011024 -86963116 - FLAM_A SINE Alu 0 133 1 381 320 72 7 chrX 90011336 90011489 -86962651 + L2 LINE L2 2586 2748 -566 633 121 0 2 chrX 90011489 90011738 -86962402 + AluSx SINE Alu 1 295 -15 2238 103 3 0 chrX 90012015 90012306 -86961834 - AluSq SINE Alu -21 292 1 306 286 13 0 chrX 90012310 90012387 -86961753 + L2 LINE L2 2978 3055 -217 445 205 80 75 chrX 90012422 90012622 -86961518 - L1ME3A LINE L1 0 6170 5970 1884 161 226 38 chrX 90012719 90012759 -86961381 - L1M4c LINE L1 -4180 2466 2435 2870 3 0 7 chrX 90012759 90013066 -86961074 - AluYa5 SINE Alu -6 305 1 1884 161 226 38 chrX 90013066 90013546 -86960594 - L1M4c LINE L1 -4211 2435 1848 641 184 88 16 chrX 90013546 90013671 -86960469 - FLAM_A SINE Alu -8 134 1 2200 127 0 9 chrX 90013695 90014010 -86960130 - AluSx SINE Alu 0 312 1 474 90 0 77 chrX 90014010 90014088 -86960052 + MSTA LTR MaLR 357 428 0 446 318 112 12 chrX 90014163 90014405 -86959735 - L1M4c LINE L1 -6275 267 2 21 0 0 0 chrX 90014552 90014573 -86959567 + AT_rich Low_complexity Low_complexity 1 21 0 456 206 24 13 chrX 90017300 90017428 -86956712 - L1MD1 LINE L1 -164 6002 5880 385 161 0 0 chrX 90017430 90017492 -86956648 - AluJ/FRAM SINE Alu -9 293 232 3078 101 21 2 chrX 90017507 90017944 -86956196 - L1PA11 LINE L1 -5 6169 5725 940 187 56 9 chrX 90017954 90018168 -86955972 - L1ME3A LINE L1 -266 5898 5675 2217 120 0 0 chrX 90018193 90018492 -86955648 - AluSx SINE Alu -13 299 1 1039 221 31 0 chrX 90018492 90018718 -86955422 - L1MD2 LINE L1 -14 6739 6507 4317 172 35 38 chrX 90018792 90019450 -86954690 - L1MB8 LINE L1 -5 6173 5514 2415 88 0 0 chrX 90019450 90019746 -86954394 - AluSx SINE Alu -16 296 1 4317 172 35 38 chrX 90019746 90019954 -86954186 - L1MB8 LINE L1 -664 5514 5307 2367 93 17 0 chrX 90019954 90020256 -86953884 - AluSx SINE Alu -5 307 1 4317 172 35 38 chrX 90020256 90020553 -86953587 - L1MB8 LINE L1 -871 5307 5011 212 0 36 0 chrX 90020553 90020581 -86953559 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1737 132 64 14 chrX 90020583 90020863 -86953277 - AluJo SINE Alu -18 294 1 4317 172 35 38 chrX 90020863 90020951 -86953189 - L1MB8 LINE L1 -1168 5010 4918 1300 185 122 0 chrX 90020952 90021239 -86952901 - L1MD2 LINE L1 -227 6526 6205 4792 186 106 91 chrX 90021258 90021778 -86952362 - L1MD2 LINE L1 -1892 4648 4137 192 40 0 0 chrX 90021778 90021803 -86952337 + (TTA)n Simple_repeat Simple_repeat 2 26 0 4792 186 106 91 chrX 90021803 90022462 -86951678 - L1MD2 LINE L1 -2403 4137 3489 1020 152 6 6 chrX 90022462 90022627 -86951513 - L1PA16 LINE L1 -10 6156 5992 2294 102 0 3 chrX 90022628 90022932 -86951208 - AluSq SINE Alu -10 303 1 4792 186 106 91 chrX 90022932 90023541 -86950599 - L1MD2 LINE L1 -3050 3490 2830 442 221 8 0 chrX 90023519 90023646 -86950494 - L1MD2 LINE L1 -4123 2417 2290 * 3148 223 86 107 chrX 90023649 90024215 -86949925 - L1MD2 LINE L1 -4943 1597 1020 2248 99 3 22 chrX 90024215 90024528 -86949612 + AluSx SINE Alu 1 307 -5 3148 223 86 107 chrX 90024528 90025548 -86948592 - L1MD2 LINE L1 -5520 1020 45 1928 143 3 13 chrX 90025677 90025978 -86948162 + AluJb SINE Alu 1 298 -14 352 290 25 6 chrX 90026030 90026192 -86947948 - L1M4 LINE L1 -3128 3018 2854 214 355 7 43 chrX 90026577 90026715 -86947425 - L2 LINE L2 -222 3050 2918 1380 242 92 30 chrX 90026953 90027444 -86946696 + LTR33 LTR ERVL 1 521 0 273 241 17 95 chrX 90027626 90027679 -86946461 - MIR SINE MIR 0 262 221 2321 83 7 3 chrX 90027679 90027979 -86946161 - AluSx SINE Alu -11 301 1 273 241 17 95 chrX 90027979 90028041 -86946099 - MIR SINE MIR -41 221 156 1073 68 0 0 chrX 90028051 90028183 -86945957 - AluSc SINE Alu -4 305 174 446 326 8 8 chrX 90028186 90028318 -86945822 - MIR SINE MIR -113 149 18 451 268 232 0 chrX 90028321 90028463 -86945677 + MER5A DNA MER1_type 12 186 -3 1820 175 13 10 chrX 90028464 90028592 -86945548 + AluJb SINE Alu 1 127 -185 387 0 0 0 chrX 90028592 90028635 -86945505 + (TG)n Simple_repeat Simple_repeat 2 44 0 1820 175 13 10 chrX 90028635 90028814 -86945326 + AluJb SINE Alu 127 309 -3 2386 95 0 0 chrX 90029220 90029525 -86944615 + AluSq SINE Alu 1 305 -8 1739 263 18 20 chrX 90029648 90030147 -86943993 + L1ME3A LINE L1 5354 5851 -319 2442 64 0 0 chrX 90030179 90030490 -86943650 + AluSq SINE Alu 1 311 0 240 35 0 0 chrX 90030745 90030774 -86943366 + (CA)n Simple_repeat Simple_repeat 2 30 0 193 256 0 0 chrX 90030777 90030820 -86943320 - MIR SINE MIR -129 79 37 427 260 59 33 chrX 90031602 90031723 -86942417 + MIR SINE MIR 35 157 -62 2019 60 0 0 chrX 90031735 90031970 -86942170 + AluSx SINE Alu 1 235 -77 912 109 79 94 chrX 90032201 90032322 -86941818 + MER3 DNA MER1_type 7 125 -84 2287 108 0 7 chrX 90032322 90032618 -86941522 - AluSx SINE Alu -18 294 1 912 109 79 94 chrX 90032618 90032698 -86941442 + MER3 DNA MER1_type 125 205 -4 547 254 15 15 chrX 90033120 90033254 -86940886 + MER5A DNA MER1_type 55 188 -1 190 256 0 0 chrX 90033363 90033402 -86940738 - L2 LINE L2 -669 2645 2607 832 272 39 4 chrX 90033530 90033762 -86940378 + MIR SINE MIR 21 260 -2 702 241 111 65 chrX 90034635 90035050 -86939090 - L1MC4a LINE L1 -1735 6073 5640 243 211 39 0 chrX 90035137 90035189 -86938951 - MIR3 SINE MIR -8 200 147 2387 88 0 0 chrX 90035239 90035536 -86938604 - AluSx SINE Alu -15 297 1 2271 104 3 0 chrX 90036592 90036889 -86937251 + AluSx SINE Alu 1 298 -14 1598 132 109 22 chrX 90036943 90037254 -86936886 + THE1C LTR MaLR 1 338 -37 180 125 0 0 chrX 90037262 90037294 -86936846 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 300 104 18 18 chrX 90037295 90037312 -86936828 + MSTA LTR MaLR 297 313 -115 2324 112 0 0 chrX 90037312 90037624 -86936516 - AluSx SINE Alu 0 312 1 300 104 18 18 chrX 90037624 90037665 -86936475 + MSTA LTR MaLR 312 428 0 632 214 23 8 chrX 90037724 90037855 -86936285 - LTR67 LTR ERVL -10 547 415 1307 283 49 27 chrX 90038037 90038483 -86935657 - LTR16B LTR ERVL -1 463 8 246 283 225 32 chrX 90038499 90038686 -86935454 - LTR67 LTR ERVL -333 224 2 300 119 0 0 chrX 90038871 90038930 -86935210 + (TC)n Simple_repeat Simple_repeat 1 59 0 1120 148 224 41 chrX 90038935 90039225 -86934915 + L1MB7 LINE L1 5400 5742 -442 2203 143 108 17 chrX 90039225 90039631 -86934509 + MLT2C2 LTR ERVL 1 443 -21 1986 167 56 10 chrX 90039631 90040021 -86934119 + L1MB7 LINE L1 5777 6184 0 2116 133 7 3 chrX 90040382 90040684 -86933456 - AluSx SINE Alu -9 303 1 2096 133 6 16 chrX 90040685 90041000 -86933140 - AluJb SINE Alu 0 312 1 2316 111 0 6 chrX 90042718 90043033 -86931107 - AluSq SINE Alu 0 313 1 2166 107 0 0 chrX 90043549 90043876 -86930264 - AluSx SINE Alu 0 327 1 1376 133 137 52 chrX 90046232 90046411 -86927729 - AluJo SINE Alu -18 294 83 2196 83 31 7 chrX 90046411 90046699 -86927441 + AluSx SINE Alu 1 295 -17 1376 133 137 52 chrX 90046699 90046790 -86927350 - AluJo SINE Alu -229 83 1 288 164 104 15 chrX 90047394 90047461 -86926679 + L1MA9 LINE L1 6240 6312 0 322 273 0 133 chrX 90047509 90047674 -86926466 + MIR3 SINE MIR 18 160 -48 462 182 0 0 chrX 90047674 90047751 -86926389 - Charlie8 DNA MER1_type 0 2417 2341 675 311 19 19 chrX 90047812 90048069 -86926071 - Charlie8 DNA MER1_type -2142 275 19 213 289 0 0 chrX 90049134 90049186 -86924954 - L2 LINE L2 -1 3312 3261 2431 80 0 46 chrX 90049731 90050058 -86924082 + AluSx SINE Alu 1 312 0 1625 177 13 43 chrX 90050422 90050727 -86923413 + AluJo SINE Alu 1 296 -16 1064 174 79 0 chrX 90051154 90051344 -86922796 - MER3 DNA MER1_type -4 205 1 228 272 224 20 chrX 90051555 90051702 -86922438 + MER5B DNA MER1_type 2 178 0 2638 58 0 0 chrX 90051750 90052058 -86922082 + AluY SINE Alu 1 308 -3 1992 115 0 47 chrX 90052545 90052689 -86921451 + AluSx SINE Alu 1 150 -152 1847 120 79 0 chrX 90052689 90052955 -86921185 + AluSx SINE Alu 5 291 -21 1992 115 0 47 chrX 90052955 90053126 -86921014 + AluSx SINE Alu 150 302 0 395 230 84 45 chrX 90053310 90053488 -86920652 - L1ME4a LINE L1 -1 6120 5936 22 70 0 0 chrX 90053582 90053625 -86920515 + AT_rich Low_complexity Low_complexity 1 43 0 683 265 113 39 chrX 90053903 90054392 -86919748 - L1ME4a LINE L1 -379 5742 5222 285 266 24 53 chrX 90054695 90054864 -86919276 - L1ME4a LINE L1 -1527 4619 4456 246 209 11 22 chrX 90055026 90055117 -86919023 + GA-rich Low_complexity Low_complexity 1 90 0 832 218 89 15 chrX 90055127 90055329 -86918811 - MIR SINE MIR -21 241 25 194 170 57 57 chrX 90056094 90056147 -86917993 - MIR SINE MIR -131 131 79 1078 48 30 12 chrX 90056157 90056323 -86917817 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 249 211 0 0 chrX 90056323 90056380 -86917760 + CT-rich Low_complexity Low_complexity 1 57 0 1225 96 0 6 chrX 90056384 90056541 -86917599 - AluSx SINE Alu -149 163 8 1201 127 12 0 chrX 90056572 90056745 -86917395 - AluSg/x SINE Alu -4 308 134 2185 126 0 0 chrX 90056745 90057046 -86917094 - AluSx SINE Alu -11 301 1 566 183 35 26 chrX 90057085 90057200 -86916940 - L2 LINE L2 -1 3312 3197 306 278 83 35 chrX 90057492 90057636 -86916504 - L1ME4a LINE L1 -3 6118 5968 5230 147 57 2 chrX 90057654 90057767 -86916373 - L1MA9 LINE L1 -38 6274 6169 300 53 0 0 chrX 90057767 90057805 -86916335 + (TG)n Simple_repeat Simple_repeat 1 38 0 5230 147 57 2 chrX 90057805 90058152 -86915988 - L1MA9 LINE L1 -143 6169 5842 369 75 0 0 chrX 90058152 90058205 -86915935 + (CA)n Simple_repeat Simple_repeat 1 53 0 5230 147 57 2 chrX 90058205 90058636 -86915504 - L1MA9 LINE L1 -470 5842 5333 225 0 0 0 chrX 90058769 90058794 -86915346 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 399 41 0 0 chrX 90060464 90060513 -86913627 + (TG)n Simple_repeat Simple_repeat 2 50 0 2371 96 0 0 chrX 90060665 90060967 -86913173 - AluSx SINE Alu -10 302 1 2412 90 3 0 chrX 90063280 90063579 -86910561 - AluSp SINE Alu -13 300 1 993 215 49 41 chrX 90063885 90063950 -86910190 - MIR SINE MIR 0 262 199 2428 93 3 0 chrX 90063950 90064261 -86909879 - AluSx SINE Alu 0 312 1 993 215 49 41 chrX 90064261 90064441 -86909699 - MIR SINE MIR -63 199 15 2035 97 25 4 chrX 90065466 90065744 -86908396 + AluSx SINE Alu 1 284 -28 288 0 0 0 chrX 90065744 90065776 -86908364 + (CA)n Simple_repeat Simple_repeat 2 33 0 655 289 85 68 chrX 90065990 90066383 -86907757 + L1MC1 LINE L1 5470 5867 -1941 1864 165 0 13 chrX 90066383 90066686 -86907454 + AluJo SINE Alu 1 299 -13 655 289 85 68 chrX 90066686 90066718 -86907422 + L1MC1 LINE L1 5867 5897 -1911 2095 181 79 44 chrX 90066776 90067257 -86906883 + MLT1D LTR MaLR 8 505 0 2417 130 6 3 chrX 90067456 90067802 -86906338 + L1MC1 LINE L1 5987 6333 0 853 163 24 81 chrX 90067983 90068229 -86905911 + LTR37B LTR ERV1 237 468 0 664 304 96 0 chrX 90068565 90068795 -86905345 - MIR SINE MIR -8 254 3 3298 216 30 0 chrX 90069364 90069566 -86904574 - L1M4 LINE L1 -984 5162 4968 233 29 29 0 chrX 90069566 90069600 -86904540 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3298 216 30 0 chrX 90069600 90070155 -86903985 - L1M4 LINE L1 -1178 4968 4382 1740 126 38 0 chrX 90070148 90070411 -86903729 + L1MC/D LINE L1 5371 5643 -690 * 1161 218 27 110 chrX 90070419 90070805 -86903335 - L1M4 LINE L1 -1778 4368 4015 25 0 0 0 chrX 90072173 90072198 -86901942 + AT_rich Low_complexity Low_complexity 1 25 0 240 270 40 61 chrX 90072700 90072848 -86901292 - L1ME4a LINE L1 -2 6119 5975 1770 183 7 10 chrX 90073099 90073400 -86900740 + AluJb SINE Alu 1 300 -12 531 188 221 70 chrX 90074079 90074292 -86899848 - L1MD3 LINE L1 0 7984 6115 1219 136 31 75 chrX 90074435 90074663 -86899477 + MER20 DNA MER1_type 2 219 0 36 70 0 0 chrX 90077593 90077664 -86896476 + AT_rich Low_complexity Low_complexity 1 71 0 1052 175 20 87 chrX 90078450 90078555 -86895585 + MIR SINE MIR 6 117 -145 2326 110 3 0 chrX 90078555 90078865 -86895275 - AluSx SINE Alu 0 312 2 1052 175 20 87 chrX 90078865 90079011 -86895129 + MIR SINE MIR 117 240 -22 3677 168 37 30 chrX 90079174 90079745 -86894395 - L1MB7 LINE L1 0 6184 5605 2249 94 0 50 chrX 90079745 90079927 -86894213 - AluSg SINE Alu -8 302 141 2305 68 14 10 chrX 90079927 90080219 -86893921 - AluY SINE Alu -18 293 1 2249 94 0 50 chrX 90080219 90080354 -86893786 - AluSg SINE Alu -169 141 1 3677 168 37 30 chrX 90080354 90080504 -86893636 - L1MB7 LINE L1 -579 5605 5458 246 62 0 0 chrX 90080755 90080787 -86893353 + (TC)n Simple_repeat Simple_repeat 1 32 0 495 214 49 116 chrX 90080829 90081040 -86893100 - MIR SINE MIR -1 261 70 2194 114 3 3 chrX 90081040 90081339 -86892801 + AluSx SINE Alu 1 299 -13 495 214 49 116 chrX 90081339 90081394 -86892746 - MIR SINE MIR -192 70 13 2260 106 0 3 chrX 90081616 90081919 -86892221 + AluSq SINE Alu 1 302 -11 2293 96 0 7 chrX 90082425 90082726 -86891414 - AluSq SINE Alu -14 299 1 2319 106 6 3 chrX 90082928 90083240 -86890900 + AluSp SINE Alu 1 313 0 1275 226 33 42 chrX 90084549 90084885 -86889255 - MER102b DNA MER1_type -8 333 1 1975 130 20 0 chrX 90084972 90085265 -86888875 - AluSx SINE Alu -11 301 3 22 70 0 0 chrX 90085729 90085772 -86888368 + AT_rich Low_complexity Low_complexity 1 43 0 1783 138 31 17 chrX 90085772 90086063 -86888077 + AluSx SINE Alu 1 295 -17 2070 105 22 0 chrX 90086320 90086625 -86887515 + AluSx SINE Alu 1 311 0 473 280 64 84 chrX 90086932 90087275 -86886865 + L1ME LINE L1 5357 5692 -429 1477 202 50 7 chrX 90087357 90087833 -86886307 - AluSx SINE Alu 0 312 2 939 141 0 0 chrX 90087834 90087969 -86886171 - AluSq/x SINE Alu -177 135 1 2252 102 7 0 chrX 90087994 90088288 -86885852 + AluSx SINE Alu 1 296 -16 356 208 52 10 chrX 90088338 90088434 -86885706 + L1ME4a LINE L1 6011 6110 -11 292 363 0 0 chrX 90089783 90089929 -86884211 + (CCA)n Simple_repeat Simple_repeat 3 148 0 1942 152 0 0 chrX 90090713 90091002 -86883138 - AluJo SINE Alu -19 293 5 11953 162 4 34 chrX 90091015 90094005 -86880135 - L1PA15 LINE L1 -3 6162 3230 1534 274 108 13 chrX 90094198 90094818 -86879322 - L1MC4a LINE L1 -1876 5932 5254 1789 134 88 0 chrX 90094889 90095172 -86878968 - AluJb SINE Alu -4 308 1 479 285 81 37 chrX 90095809 90096055 -86878085 + MIR SINE MIR 6 262 0 294 148 0 0 chrX 90096208 90096262 -86877878 + (TAA)n Simple_repeat Simple_repeat 1 54 0 284 153 17 51 chrX 90097159 90097218 -86876922 + L2 LINE L2 3250 3306 -7 2033 137 0 0 chrX 90098130 90098423 -86875717 - AluJb SINE Alu -19 293 1 1020 199 14 63 chrX 90099822 90100043 -86874097 + MER63A DNA MER1_type 1 210 0 2201 121 0 3 chrX 90100072 90100377 -86873763 + AluSx SINE Alu 1 304 -8 256 279 0 0 chrX 90100466 90100534 -86873606 + L1ME1 LINE L1 6080 6147 -19 327 65 0 0 chrX 90100609 90100655 -86873485 + (TG)n Simple_repeat Simple_repeat 2 47 0 356 106 136 0 chrX 90100715 90100781 -86873359 + MADE1 DNA Mariner 6 80 0 1111 141 6 0 chrX 90100859 90101029 -86873111 + L1PB4 LINE L1 5958 6128 -28 754 148 22 37 chrX 90101031 90101157 -86872983 + FLAM_C SINE Alu 3 129 -183 2283 41 44 0 chrX 90101157 90101452 -86872688 - AluY SINE Alu 0 308 2 227 196 0 0 chrX 90101577 90101623 -86872517 + L1ME LINE L1 5760 5805 -316 1059 170 0 6 chrX 90101713 90102057 -86872083 + AluJb SINE Alu 132 474 0 21 36 0 0 chrX 90102089 90102117 -86872023 + AT_rich Low_complexity Low_complexity 1 28 0 12606 24 1 0 chrX 90102944 90104388 -86869752 - L1P LINE L1 -1143 5003 3559 806 206 26 26 chrX 90104565 90104754 -86869386 + MER53 DNA DNA 1 189 0 1578 156 58 52 chrX 90105152 90105480 -86868660 + MER58B DNA MER1_type 4 333 -8 713 307 66 17 chrX 90105996 90106237 -86867903 + MIR SINE MIR 5 257 -5 27 49 0 0 chrX 90106609 90106650 -86867490 + AT_rich Low_complexity Low_complexity 1 41 0 288 319 52 44 chrX 90106890 90107025 -86867115 - MIR3 SINE MIR -53 155 20 321 251 166 86 chrX 90107420 90107529 -86866611 + MIR3 SINE MIR 30 158 -50 1500 191 25 9 chrX 90107529 90107848 -86866292 + MER33 DNA MER1_type 1 324 0 321 251 166 86 chrX 90107848 90107901 -86866239 + MIR3 SINE MIR 158 205 -3 199 217 96 52 chrX 90108891 90109006 -86865134 + L3 LINE CR1 765 884 -693 901 275 133 58 chrX 90109362 90110331 -86863809 - L1MB8 LINE L1 -231 5947 4857 2055 150 0 0 chrX 90110331 90110638 -86863502 - AluSx SINE Alu -5 307 1 901 275 133 58 chrX 90110638 90110851 -86863289 - L1MB8 LINE L1 -1321 4857 4661 2520 59 0 3 chrX 90110970 90111277 -86862863 - AluY SINE Alu -5 306 1 951 270 61 15 chrX 90111277 90111504 -86862636 - L1MB8 LINE L1 -1715 4431 4175 2260 82 36 7 chrX 90111504 90111807 -86862333 - AluSq SINE Alu -1 312 1 951 270 61 15 chrX 90111807 90111986 -86862154 - L1MB8 LINE L1 -1971 4175 4006 273 143 16 32 chrX 90112017 90112080 -86862060 - MER69 DNA AcHobo -91 2435 2374 270 196 93 41 chrX 90112138 90112235 -86861905 - MER69 DNA AcHobo -134 2392 2291 * 1700 216 18 6 chrX 90112232 90112566 -86861574 - MER69 DNA AcHobo -785 441 104 755 315 120 25 chrX 90112572 90112805 -86861335 + L3 LINE CR1 1091 1300 -277 2031 144 0 13 chrX 90112805 90113117 -86861023 + AluSx SINE Alu 1 308 -4 755 315 120 25 chrX 90113117 90113324 -86860816 + L3 LINE CR1 1300 1573 -4 7200 44 0 1 chrX 90113645 90114466 -86859674 + L1PA8 LINE L1 5345 6164 -8 225 94 0 0 chrX 90115137 90115169 -86858971 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2239 53 42 7 chrX 90115172 90115456 -86858684 - AluY SINE Alu -17 294 1 295 276 46 0 chrX 90115655 90115742 -86858398 + MIR SINE MIR 48 138 -124 272 266 31 0 chrX 90115836 90115900 -86858240 + MIR SINE MIR 2 67 -195 404 247 0 0 chrX 90115914 90116007 -86858133 + MIR SINE MIR 169 261 -1 213 261 0 58 chrX 90116426 90116495 -86857645 + MIR SINE MIR 156 220 -42 189 210 97 65 chrX 90116612 90116674 -86857466 + L2 LINE L2 2991 3054 -218 2131 154 126 32 chrX 90116887 90117349 -86856791 + MLT1D LTR MaLR 1 505 0 2272 104 0 16 chrX 90117424 90117741 -86856399 + AluSx SINE Alu 1 312 0 231 88 0 0 chrX 90118123 90118157 -86855983 + (A)n Simple_repeat Simple_repeat 1 34 0 206 219 246 79 chrX 90118808 90118922 -86855218 + MER5A DNA MER1_type 50 182 -7 2341 107 0 3 chrX 90119486 90119796 -86854344 + AluSg SINE Alu 1 309 -1 2079 131 0 22 chrX 90119804 90120117 -86854023 + AluSx SINE Alu 1 306 -6 722 237 65 49 chrX 90120565 90120810 -86853330 - L2 LINE L2 0 3313 3065 320 359 6 0 chrX 90121957 90122124 -86852016 + (CCA)n Simple_repeat Simple_repeat 1 168 0 546 303 80 5 chrX 90122807 90122995 -86851145 - L2 LINE L2 -229 3084 2883 2491 131 20 95 chrX 90122996 90123090 -86851050 + MLT1C LTR MaLR 2 102 -365 2259 119 0 3 chrX 90123090 90123401 -86850739 + AluSx SINE Alu 1 310 -2 2491 131 20 95 chrX 90123401 90123512 -86850628 + MLT1C LTR MaLR 102 220 -247 201 94 0 0 chrX 90123512 90123544 -86850596 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 674 244 0 0 chrX 90123546 90123669 -86850471 - FLAM_A SINE Alu -10 123 1 2491 131 20 95 chrX 90123669 90123858 -86850282 + MLT1C LTR MaLR 221 357 -110 1913 146 0 0 chrX 90123858 90124133 -86850007 + AluJb SINE Alu 4 278 -34 2491 131 20 95 chrX 90124133 90124237 -86849903 + MLT1C LTR MaLR 357 467 0 221 302 70 0 chrX 90124238 90124324 -86849816 - L2 LINE L2 -427 2887 2796 673 63 0 0 chrX 90124537 90124616 -86849524 - MADE1 DNA Mariner -1 79 1 334 134 60 15 chrX 90124763 90124830 -86849310 - MLT1F LTR MaLR -4 538 469 959 227 31 10 chrX 90125073 90125380 -86848760 + Charlie4a DNA MER1_type 1 334 -174 1957 165 33 3 chrX 90125380 90125743 -86848397 + L1MA8 LINE L1 4548 4921 -1225 857 128 7 54 chrX 90125743 90125937 -86848203 + FLAM_C SINE Alu 1 187 0 5384 142 19 38 chrX 90125944 90126345 -86847795 + L1MA8 LINE L1 4906 5313 -978 1900 90 0 0 chrX 90126345 90126597 -86847543 + L1MA2 LINE L1 6048 6303 -1 5384 142 19 38 chrX 90126597 90127510 -86846630 + L1MA8 LINE L1 5313 6196 -95 3543 177 12 14 chrX 90127480 90128120 -86846020 + L1PB4 LINE L1 5529 6036 -120 * 2272 92 0 0 chrX 90128120 90128404 -86845736 + AluSg SINE Alu 1 284 -26 3543 177 12 14 chrX 90128404 90128523 -86845617 + L1PB4 LINE L1 6036 6154 -2 229 205 64 13 chrX 90128545 90128623 -86845517 + Charlie4a DNA MER1_type 312 393 -115 810 172 27 152 chrX 90128629 90128885 -86845255 - AluJo SINE Alu -68 244 21 533 189 90 8 chrX 90128887 90129009 -86845131 + Charlie4a DNA MER1_type 377 508 0 205 210 32 0 chrX 90129239 90129301 -86844839 + L2 LINE L2 2520 2583 -731 769 190 29 11 chrX 90129355 90129529 -86844611 - MER104 DNA Tc2 -3 177 1 963 252 213 31 chrX 90130259 90130799 -86843341 + L1MC4a LINE L1 5505 5743 -499 904 178 18 24 chrX 90130800 90130969 -86843171 + AluJb SINE Alu 121 288 -24 22 0 0 0 chrX 90130976 90130998 -86843142 + AT_rich Low_complexity Low_complexity 1 22 0 1378 246 67 96 chrX 90131022 90131436 -86842704 + L1MC4a LINE L1 6195 6620 -1188 1842 146 4 4 chrX 90131436 90131704 -86842436 + AluSq SINE Alu 1 268 -45 1378 246 67 96 chrX 90131704 90131727 -86842413 + L1MC4a LINE L1 6620 6642 -1166 423 0 0 0 chrX 90131727 90131774 -86842366 + (TG)n Simple_repeat Simple_repeat 2 48 0 1378 246 67 96 chrX 90131774 90132083 -86842057 + L1MC4a LINE L1 6642 6920 -888 2494 261 65 69 chrX 90132141 90133350 -86840790 + L1M4 LINE L1 7 1193 -5349 1908 163 0 0 chrX 90133366 90133666 -86840474 + AluSx SINE Alu 1 300 -12 2136 203 45 10 chrX 90133677 90134194 -86839946 + L1M4 LINE L1 4668 5202 -1442 340 132 0 0 chrX 90134194 90134253 -86839887 + Alu SINE Alu 1 44 -264 1607 141 8 4 chrX 90134253 90134494 -86839646 - AluJb SINE Alu -70 242 1 816 153 0 29 chrX 90134653 90134790 -86839350 + FLAM_C SINE Alu 1 133 0 212 248 141 50 chrX 90134866 90134922 -86839218 + MER5A DNA MER1_type 58 108 -81 2584 50 0 3 chrX 90134922 90135223 -86838917 - AluY SINE Alu -11 300 1 212 248 141 50 chrX 90135223 90135287 -86838853 + MER5A DNA MER1_type 108 189 0 231 204 0 0 chrX 90135287 90135331 -86838809 + (TATG)n Simple_repeat Simple_repeat 2 45 0 2823 205 74 16 chrX 90135365 90135851 -86838289 + L1M4c LINE L1 2713 3245 -3399 2199 122 3 0 chrX 90135851 90136146 -86837994 + AluSq SINE Alu 1 296 -17 2823 205 74 16 chrX 90136146 90136469 -86837671 + L1M4c LINE L1 3245 3548 -3096 1806 225 38 0 chrX 90136465 90136891 -86837249 + L1M4c LINE L1 4067 4508 -2136 * 2261 75 3 0 chrX 90136891 90137173 -86836967 - AluY SINE Alu -19 292 10 1175 166 28 67 chrX 90137173 90137209 -86836931 - L1MCb LINE L1 -3627 2937 2901 2256 91 3 0 chrX 90137209 90137523 -86836617 - AluSp SINE Alu 0 315 1 1175 166 28 67 chrX 90137523 90137768 -86836372 - L1MCb LINE L1 -3663 2901 2666 931 200 5 0 chrX 90137767 90137952 -86836188 + L1 LINE L1 3636 3821 -2325 * 3578 116 89 0 chrX 90137954 90138547 -86835593 - L1PBa LINE L1 -3915 2948 2303 2013 83 0 26 chrX 90138554 90138819 -86835321 - AluSq SINE Alu -52 261 4 5680 149 54 15 chrX 90138833 90140120 -86834020 - L1MC2 LINE L1 0 6344 5009 1298 235 27 24 chrX 90140122 90140416 -86833724 + MLT1A2 LTR MaLR 80 374 0 1165 171 9 31 chrX 90140416 90140638 -86833502 - L1MCb LINE L1 -4951 1094 878 693 139 0 9 chrX 90140648 90140763 -86833377 + L1MD3 LINE L1 6866 6979 -1016 397 200 52 61 chrX 90140798 90140913 -86833227 + MLT1F1 LTR MaLR 35 148 -419 2603 156 100 39 chrX 90140913 90141452 -86832688 + L1MC3 LINE L1 7214 7785 0 30 27 0 0 chrX 90141468 90141505 -86832635 + AT_rich Low_complexity Low_complexity 1 37 0 233 338 88 0 chrX 90141508 90141588 -86832552 + MIR SINE MIR 54 140 -122 247 240 0 0 chrX 90141606 90141656 -86832484 + L1M3d LINE L1 1 50 -5841 1301 142 129 50 chrX 90141666 90141983 -86832157 + MER4A LTR ERV1 1 342 -322 583 178 284 13 chrX 90142005 90142230 -86831910 + MER4C LTR ERV1 159 444 -21 649 184 122 79 chrX 90142249 90142740 -86831400 + MER4C-int LTR ERV1 1 640 -5958 645 69 0 0 chrX 90142740 90142827 -86831313 + (TG)n Simple_repeat Simple_repeat 2 88 0 649 184 122 79 chrX 90142827 90142862 -86831278 + MER4C-int LTR ERV1 640 672 -5926 347 313 40 67 chrX 90142876 90143100 -86831040 + MER4B-int LTR ERV1 359 576 -6182 270 182 0 0 chrX 90143224 90143268 -86830872 + MER4B-int LTR ERV1 751 794 -5804 960 92 7 20 chrX 90143548 90143700 -86830440 - LTR7 LTR ERV1 0 450 301 3669 110 14 11 chrX 90143719 90144273 -86829867 - HERVH LTR ERV1 -1 7712 7157 2317 159 19 5 chrX 90144266 90144687 -86829453 - HERVH LTR ERV1 -1697 6016 5590 * 10034 114 15 42 chrX 90144678 90146262 -86827878 - HERVH LTR ERV1 -2564 5149 3609 * 10240 134 5 28 chrX 90146255 90147916 -86826224 - HERVH LTR ERV1 -5290 2423 801 2136 179 42 26 chrX 90147982 90148434 -86825706 - HERVH LTR ERV1 -7254 459 1 2124 96 245 6 chrX 90148434 90148797 -86825343 - LTR7 LTR ERV1 0 450 1 295 222 0 0 chrX 90151020 90151083 -86823057 + MER4A-int LTR ERV1 3104 3166 -1788 548 315 61 59 chrX 90151387 90152433 -86821707 + MER4A-int LTR ERV1 3222 4930 -2826 2362 54 0 78 chrX 90152433 90152767 -86821373 + AluY SINE Alu 1 308 -3 548 315 61 59 chrX 90152767 90152850 -86821290 + MER4A-int LTR ERV1 4930 5011 -2745 2194 117 3 0 chrX 90153165 90153465 -86820675 + AluSq SINE Alu 1 301 -12 269 324 42 37 chrX 90153572 90153769 -86820371 + MER4A-int LTR ERV1 2142 2306 -2341 183 243 0 86 chrX 90153778 90153848 -86820292 + L2 LINE L2 2528 2591 -723 585 326 51 53 chrX 90153853 90154362 -86819778 + MER4A-int LTR ERV1 2390 2897 -1750 1931 319 35 21 chrX 90154672 90155690 -86818450 + MER4A-int LTR ERV1 5633 6665 -457 450 250 56 50 chrX 90155531 90155711 -86818429 + HERVL18 LTR ERVL 5621 5801 -246 * 228 241 0 0 chrX 90156049 90156107 -86818033 + T-rich Low_complexity Low_complexity 1 58 0 504 208 0 139 chrX 90156164 90156337 -86817803 + MER4A-int LTR ERV1 6450 6598 0 1204 158 126 54 chrX 90156340 90156657 -86817483 + MER4A LTR ERV1 3 342 -322 2433 60 0 0 chrX 90156691 90157018 -86817122 - AluSp SINE Alu 0 327 1 719 191 266 0 chrX 90157757 90157998 -86816142 + MER4C LTR ERV1 143 447 -18 284 301 68 38 chrX 90161567 90161700 -86812440 + L1M4 LINE L1 -170 4294967262 -6314 225 0 0 0 chrX 90162077 90162102 -86812038 + (CAA)n Simple_repeat Simple_repeat 2 26 0 2801 179 28 113 chrX 90162192 90163152 -86810988 + L1M4 LINE L1 777 1782 -4521 10532 192 28 83 chrX 90163172 90165078 -86809062 - L1PB1 LINE L1 -8 6859 4849 1618 186 174 41 chrX 90165078 90165562 -86808578 - LTR10A LTR ERV1 -61 548 1 10532 192 28 83 chrX 90165562 90166489 -86807651 - L1PB1 LINE L1 -2018 4849 3872 2328 85 3 7 chrX 90166489 90166794 -86807346 - AluY SINE Alu -7 304 1 10532 192 28 83 chrX 90166794 90169225 -86804915 - L1PB1 LINE L1 -2995 3872 1094 2796 223 94 11 chrX 90169229 90170023 -86804117 - L1PB1 LINE L1 -5817 1046 187 439 185 0 0 chrX 90170031 90170112 -86804028 + L1MB3 LINE L1 1604 1684 -4700 * 5926 170 28 16 chrX 90170109 90171605 -86802535 + L1MB3 LINE L1 4345 5866 -553 2562 144 150 40 chrX 90171605 90172104 -86802036 - MLT2B3 LTR ERVL 0 554 1 5926 170 28 16 chrX 90172104 90172664 -86801476 + L1MB3 LINE L1 5866 6418 -1 193 119 119 0 chrX 90172681 90172723 -86801417 + MIR SINE MIR 161 207 -55 331 268 106 16 chrX 90174512 90174635 -86799505 + MIR SINE MIR 11 144 -118 2219 188 97 37 chrX 90174648 90175239 -86798901 + MLT1E2 LTR MaLR 27 626 0 190 200 0 0 chrX 90175245 90175280 -86798860 + MIR SINE MIR 228 262 0 300 263 144 25 chrX 90175456 90175574 -86798566 - MER20B DNA MER1_type -616 167 36 334 307 32 45 chrX 90175671 90175851 -86798289 - MER5A DNA MER1_type 0 189 1 2205 79 10 0 chrX 90176155 90176445 -86797695 - AluSp SINE Alu -20 293 1 22 0 0 0 chrX 90178117 90178139 -86796001 + AT_rich Low_complexity Low_complexity 1 22 0 276 151 38 0 chrX 90178649 90178702 -86795438 - L1MB8 LINE L1 0 6178 6124 2253 107 3 0 chrX 90178744 90179043 -86795097 + AluSx SINE Alu 1 300 -12 28 48 0 0 chrX 90179505 90179547 -86794593 + AT_rich Low_complexity Low_complexity 1 42 0 452 53 0 0 chrX 90179740 90179797 -86794343 + Alu SINE Alu 247 303 -7 457 207 0 74 chrX 90181438 90181559 -86792581 - MIR SINE MIR -34 228 117 474 251 144 6 chrX 90181723 90181890 -86792250 + L1ME3 LINE L1 5681 5870 -292 232 243 129 7 chrX 90182253 90182393 -86791747 + L1M LINE L1 5265 5421 -2387 1191 211 32 5 chrX 90182490 90182708 -86791432 - MER58A DNA MER1_type 0 224 1 324 222 56 90 chrX 90182725 90182869 -86791271 - MIR SINE MIR -120 142 4 32 0 0 0 chrX 90183124 90183156 -86790984 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chrX 90183224 90183244 -86790896 + (T)n Simple_repeat Simple_repeat 1 20 0 309 250 0 0 chrX 90185073 90185133 -86789007 + MER3 DNA MER1_type 31 90 -119 * 1296 157 0 5 chrX 90185096 90185300 -86788840 - MER3 DNA MER1_type -6 203 1 268 283 275 14 chrX 90185715 90185853 -86788287 - MIR SINE MIR -17 245 72 303 179 90 39 chrX 90185903 90185981 -86788159 - MIR SINE MIR -124 84 3 1930 158 0 10 chrX 90186140 90186431 -86787709 + AluJb SINE Alu 1 288 -24 240 200 0 0 chrX 90186431 90186481 -86787659 + (CATA)n Simple_repeat Simple_repeat 3 52 0 2331 102 0 0 chrX 90188867 90189172 -86784968 + AluSq SINE Alu 1 305 -8 951 279 45 0 chrX 90189182 90189426 -86784714 - MIR SINE MIR 0 262 8 364 299 34 26 chrX 90190729 90190846 -86783294 + MER5B DNA MER1_type 61 178 0 495 265 44 0 chrX 90191235 90191371 -86782769 - MIR3 SINE MIR -17 191 50 741 192 32 13 chrX 90191602 90191758 -86782382 - L2 LINE L2 0 3313 3155 40 21 0 0 chrX 90191967 90192014 -86782126 + AT_rich Low_complexity Low_complexity 1 47 0 976 198 17 6 chrX 90192052 90192224 -86781916 + FAM SINE Alu 1 174 -1 594 154 0 39 chrX 90192237 90192341 -86781799 + FLAM_A SINE Alu 21 120 -22 408 282 111 0 chrX 90192592 90192709 -86781431 + MER94 DNA DNA 1 130 -4 378 60 0 0 chrX 90192851 90192901 -86781239 + L1PB1 LINE L1 6101 6150 -1 26 30 0 0 chrX 90193134 90193167 -86780973 + AT_rich Low_complexity Low_complexity 1 33 0 820 85 0 9 chrX 90193652 90193758 -86780382 - AluJb SINE Alu -207 105 1 1124 96 130 6 chrX 90193758 90193935 -86780205 + Tigger1 DNA MER2_type 2220 2418 0 252 262 57 49 chrX 90193950 90193969 -86780171 + L1ME4a LINE L1 5988 6005 -116 2388 64 0 0 chrX 90193969 90194251 -86779889 + AluY SINE Alu 9 290 -21 273 75 0 0 chrX 90194251 90194291 -86779849 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 252 262 57 49 chrX 90194291 90194392 -86779748 + L1ME4a LINE L1 6004 6110 -11 22 0 0 0 chrX 90194426 90194448 -86779692 + AT_rich Low_complexity Low_complexity 1 22 0 719 55 143 0 chrX 90194589 90194708 -86779432 + L1PA8 LINE L1 6056 6187 0 395 322 58 0 chrX 90195768 90195939 -86778201 - L1ME3A LINE L1 -239 5931 5751 877 171 117 63 chrX 90196136 90196341 -86777799 - MER20 DNA MER1_type -3 216 1 186 313 30 30 chrX 90196344 90196411 -86777729 - L2 LINE L2 -16 3256 3190 496 314 38 90 chrX 90196488 90196861 -86777279 - L2 LINE L2 -101 3171 2833 2793 154 49 5 chrX 90196861 90197308 -86776832 - MLT1C LTR MaLR 0 467 1 496 314 38 90 chrX 90197308 90197405 -86776735 - L2 LINE L2 -439 2833 2733 3045 179 18 5 chrX 90197447 90198000 -86776140 - L1MB7 LINE L1 -358 5826 5267 255 335 59 25 chrX 90198358 90198561 -86775579 + L2 LINE L2 1912 2121 -1193 222 262 196 28 chrX 90198607 90198714 -86775426 - L2 LINE L2 -13 3300 3176 225 159 0 0 chrX 90198775 90198819 -86775321 + (CA)n Simple_repeat Simple_repeat 2 45 0 676 227 184 0 chrX 90198819 90198982 -86775158 - MIR SINE MIR -69 193 1 252 280 19 9 chrX 90198991 90199098 -86775042 + (TA)n Simple_repeat Simple_repeat 2 109 0 256 275 175 0 chrX 90200308 90200388 -86773752 - L2 LINE L2 -243 3070 2977 231 355 118 7 chrX 90200460 90200612 -86773528 - L2 LINE L2 -493 2821 2653 901 327 145 49 chrX 90200637 90201534 -86772606 + L2 LINE L2 2224 3222 -50 972 222 76 0 chrX 90201702 90201900 -86772240 + MER20 DNA MER1_type 7 219 0 534 194 0 0 chrX 90202269 90202372 -86771768 - MIR SINE MIR -61 201 99 2373 79 0 0 chrX 90202801 90203092 -86771048 - AluSg SINE Alu -19 291 1 390 207 156 22 chrX 90205305 90205440 -86768700 + L1ME4a LINE L1 5956 6108 -13 920 267 98 45 chrX 90205638 90206129 -86768011 - LTR33 LTR ERVL -2 519 3 2932 176 20 7 chrX 90206149 90206689 -86767451 - L1MA10 LINE L1 -7 6327 5781 5571 128 14 30 chrX 90206689 90207326 -86766814 + Tigger7 DNA MER2_type 2 623 -1864 2189 119 3 0 chrX 90207326 90207636 -86766504 + AluSx SINE Alu 1 311 -1 5571 128 14 30 chrX 90207636 90207850 -86766290 + Tigger7 DNA MER2_type 623 839 -1648 1771 89 16 8 chrX 90207849 90208107 -86766033 + Tigger7 DNA MER2_type 2227 2486 -1 * 3304 143 20 18 chrX 90208107 90208402 -86765738 - L1MA10 LINE L1 -528 5784 5491 2139 111 4 0 chrX 90208402 90208720 -86765420 - AluSx SINE Alu 0 320 2 3304 143 20 18 chrX 90208720 90209314 -86764826 - L1MA10 LINE L1 -821 5491 4895 362 353 57 60 chrX 90209659 90210223 -86763917 + HERVL LTR ERVL 784 1345 -4309 1615 53 0 0 chrX 90210745 90210935 -86763205 - L1PA6 LINE L1 -5 6149 5960 2437 226 44 9 chrX 90211847 90211997 -86762143 + L1MC4 LINE L1 6482 6625 -1417 2425 69 0 0 chrX 90211997 90212287 -86761853 + AluY SINE Alu 1 290 -21 198 0 0 0 chrX 90212287 90212309 -86761831 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 2437 226 44 9 chrX 90212309 90212355 -86761785 + L1MC4 LINE L1 6625 6668 -1374 279 0 0 0 chrX 90212355 90212386 -86761754 + (CA)n Simple_repeat Simple_repeat 2 32 0 2437 226 44 9 chrX 90212386 90212754 -86761386 + L1MC4 LINE L1 6668 7068 -974 1405 157 5 0 chrX 90212754 90212977 -86761163 - Tigger5 DNA MER2_type 0 2323 2100 1301 224 123 0 chrX 90212976 90213244 -86760896 - Tigger5 DNA MER2_type -2022 301 1 * 5305 145 6 5 chrX 90213245 90214050 -86760090 - ERVL-B3 LTR ERVL -323 5441 4636 411 166 0 4 chrX 90214050 90214129 -86760011 + L1PA16 LINE L1 5799 5875 -256 2217 151 11 0 chrX 90214132 90214483 -86759657 - ERVL-B3 LTR ERVL -1761 4003 3649 * 7299 128 14 3 chrX 90214479 90215520 -86758620 - ERVL-B3 LTR ERVL -3037 2727 1675 6821 169 19 41 chrX 90215520 90216265 -86757875 + L1PB1 LINE L1 3644 4404 -1747 306 0 0 0 chrX 90216265 90216299 -86757841 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 6821 169 19 41 chrX 90216299 90216360 -86757780 + L1PB1 LINE L1 4404 4465 -1686 2541 84 0 0 chrX 90216360 90216671 -86757469 + AluY SINE Alu 1 311 0 6821 169 19 41 chrX 90216671 90216829 -86757311 + L1PB1 LINE L1 4465 4625 -1526 8126 28 0 0 chrX 90216829 90218102 -86756038 - L1PA4 LINE L1 -3 6152 4881 6821 169 19 41 chrX 90218102 90219516 -86754624 + L1PB1 LINE L1 4625 5965 -186 2101 123 0 0 chrX 90219516 90219827 -86754313 + AluSx SINE Alu 1 311 0 6821 169 19 41 chrX 90219827 90220005 -86754135 + L1PB1 LINE L1 5965 6145 -6 9082 186 42 17 chrX 90220026 90221683 -86752457 - ERVL-B3 LTR ERVL -4065 1699 2 3567 160 9 28 chrX 90221684 90221727 -86752413 - MLT2B3 LTR ERVL 0 554 512 413 65 0 16 chrX 90221727 90221789 -86752351 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 3567 160 9 28 chrX 90221789 90222309 -86751831 - MLT2B3 LTR ERVL -42 512 2 417 347 92 26 chrX 90222329 90222600 -86751540 - HERVL LTR ERVL -4008 1646 1358 26 0 0 0 chrX 90222614 90222640 -86751500 + AT_rich Low_complexity Low_complexity 1 26 0 1655 185 74 59 chrX 90222695 90223116 -86751024 - L1MC4 LINE L1 -142 7900 7474 1079 198 26 1 chrX 90223117 90223461 -86750679 + MLT2F LTR ERVL 1 398 -265 680 114 0 0 chrX 90223481 90223569 -86750571 + AluSg/x SINE Alu 211 298 -12 2502 53 0 16 chrX 90223585 90223888 -86750252 + AluY SINE Alu 1 298 -13 471 131 0 101 chrX 90223888 90223987 -86750153 - L1M1 LINE L1 -4437 3128 3040 * 12298 153 30 16 chrX 90223985 90226010 -86748130 - L1M1 LINE L1 -5501 2064 13 518 180 9 0 chrX 90226018 90226129 -86748011 - L1M4c LINE L1 -4172 2562 2451 3645 225 35 32 chrX 90226226 90227385 -86746755 - L1M4c LINE L1 -4516 2137 1150 260 271 43 93 chrX 90227673 90227813 -86746327 - L1M4c LINE L1 -5315 1338 1206 189 0 0 0 chrX 90227870 90227891 -86746249 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 10427 89 14 0 chrX 90227891 90230036 -86744104 - L1PA8 LINE L1 -18 6154 3985 10979 183 15 9 chrX 90230036 90232257 -86741883 - L1 LINE L1 -1827 4555 2320 5707 128 29 6 chrX 90232253 90233167 -86740973 - L1PA16 LINE L1 -2 6164 5230 * 354 254 23 23 chrX 90233140 90233313 -86740827 - L1 LINE L1 -4049 2333 2161 * 1203 158 0 0 chrX 90233315 90233479 -86740661 + FAM SINE Alu 1 164 -11 2720 69 2 117 chrX 90233502 90233964 -86740176 + L1PB1 LINE L1 5742 6150 -1 2547 98 2 117 chrX 90233503 90233964 -86740176 + L1PB2 LINE L1 5743 6150 -1 1083 176 0 0 chrX 90233990 90234160 -86739980 + AluJo SINE Alu 118 287 -25 31 0 0 0 chrX 90234160 90234191 -86739949 + AT_rich Low_complexity Low_complexity 1 31 0 4146 222 39 16 chrX 90234200 90235683 -86738457 - L1 LINE L1 -4216 2166 797 13857 184 5 9 chrX 90235684 90238810 -86735330 - L1P5 LINE L1 -510 5641 2528 2355 71 0 3 chrX 90238810 90239104 -86735036 - AluY SINE Alu -18 293 1 240 111 0 0 chrX 90239157 90239193 -86734947 + (TC)n Simple_repeat Simple_repeat 1 36 0 2128 217 31 40 chrX 90239193 90239742 -86734398 + HAL1b LINE L1 384 927 -421 2379 115 0 0 chrX 90239785 90240098 -86734042 + AluSq SINE Alu 1 313 0 2724 140 36 40 chrX 90240121 90240183 -86733957 + L1MB8 LINE L1 5652 5713 -465 2380 84 0 22 chrX 90240183 90240494 -86733646 - AluSc SINE Alu -5 304 1 2724 140 36 40 chrX 90240494 90240960 -86733180 + L1MB8 LINE L1 5713 6178 0 985 233 109 0 chrX 90240979 90241292 -86732848 + HAL1b LINE L1 938 1284 -64 529 167 80 33 chrX 90241378 90241528 -86732612 + L1ME4a LINE L1 5962 6118 -3 477 285 66 20 chrX 90243381 90243532 -86730608 - L2 LINE L2 -8 3264 3107 29 37 0 19 chrX 90243740 90243771 -86730369 + AT_rich Low_complexity Low_complexity 1 32 -21 1568 179 0 43 chrX 90243771 90244073 -86730067 + AluJb SINE Alu 1 289 -23 29 37 0 19 chrX 90244073 90244095 -86730045 + AT_rich Low_complexity Low_complexity 32 53 0 518 272 133 25 chrX 90244241 90244612 -86729528 + L1MC4a LINE L1 5568 5991 -130 886 167 8 0 chrX 90244833 90244965 -86729175 - FLAM_A SINE Alu 0 133 1 376 381 32 26 chrX 90245140 90245452 -86728688 - L2 LINE L2 -774 2540 2227 231 326 11 33 chrX 90245755 90245847 -86728293 + L2 LINE L2 3184 3273 -40 841 238 70 5 chrX 90245907 90246121 -86728019 - MIR SINE MIR -14 248 21 221 328 179 31 chrX 90246521 90247106 -86727034 + L2 LINE L2 805 1476 -1838 1046 257 100 52 chrX 90247262 90248090 -86726050 + L1MEc LINE L1 2156 2983 -3232 2381 28 28 7 chrX 90248651 90248934 -86725206 + L1PA7 LINE L1 5866 6154 0 370 284 60 6 chrX 90248990 90249173 -86724967 + L1M4 LINE L1 2477 2669 -3477 336 158 70 0 chrX 90249373 90249430 -86724710 + MIR SINE MIR 37 97 -165 320 306 81 9 chrX 90249662 90249773 -86724367 + L2 LINE L2 3147 3265 -7 1023 215 27 69 chrX 90249890 90249912 -86724228 + MIR SINE MIR 14 35 -227 1960 122 6 32 chrX 90249912 90250223 -86723917 + AluSx SINE Alu 1 303 -9 1023 215 27 69 chrX 90250223 90250460 -86723680 + MIR SINE MIR 35 262 0 496 103 103 0 chrX 90250608 90250695 -86723445 - L1PB3 LINE L1 0 6154 6059 6236 228 68 39 chrX 90251242 90253042 -86721098 + L1ME1 LINE L1 68 1920 -4476 2039 185 147 42 chrX 90253034 90253862 -86720278 + L1ME1 LINE L1 4769 5738 -497 * 2196 112 3 3 chrX 90253863 90254166 -86719974 + AluSq SINE Alu 1 303 -10 1216 136 0 0 chrX 90254167 90254336 -86719804 + AluSg/x SINE Alu 134 302 -10 1988 191 36 54 chrX 90254337 90254803 -86719337 + L1ME1 LINE L1 5732 6189 -46 594 187 101 0 chrX 90254700 90254839 -86719301 + L1MA10 LINE L1 6244 6396 -7 * 2513 54 7 0 chrX 90254965 90255259 -86718881 - AluY SINE Alu -15 296 1 1078 209 205 32 chrX 90255404 90255721 -86718419 + Charlie7 DNA MER1_type 2095 2508 -104 2009 149 0 7 chrX 90255721 90256023 -86718117 - AluJb SINE Alu -12 300 1 1078 209 205 32 chrX 90256023 90256140 -86718000 + Charlie7 DNA MER1_type 2508 2604 -8 1699 144 69 28 chrX 90256348 90256458 -86717682 + AluJb SINE Alu 1 105 -207 195 69 0 0 chrX 90256458 90256487 -86717653 + (CA)n Simple_repeat Simple_repeat 2 30 0 1699 144 69 28 chrX 90256487 90256667 -86717473 + AluJb SINE Alu 105 303 -9 2370 83 3 3 chrX 90256867 90257168 -86716972 + AluSp SINE Alu 1 301 -12 231 36 0 0 chrX 90257230 90257258 -86716882 + (A)n Simple_repeat Simple_repeat 1 28 0 353 332 116 71 chrX 90257827 90258249 -86715891 - L2 LINE L2 -26 3246 2806 787 216 82 41 chrX 90258580 90258825 -86715315 + MIR SINE MIR 1 255 -7 2157 114 3 0 chrX 90259483 90259780 -86714360 - AluSg SINE Alu -12 298 1 1104 188 84 36 chrX 90259827 90260077 -86714063 - MIR SINE MIR 0 262 1 24 0 0 0 chrX 90261535 90261559 -86712581 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chrX 90261587 90261641 -86712499 + AT_rich Low_complexity Low_complexity 1 54 0 22 56 0 0 chrX 90261768 90261804 -86712336 + AT_rich Low_complexity Low_complexity 1 36 0 650 198 32 0 chrX 90262088 90262214 -86711926 + L2 LINE L2 3182 3311 -2 913 289 181 58 chrX 90262246 90262478 -86711662 + L2 LINE L2 796 998 -2316 2266 110 13 0 chrX 90262478 90262786 -86711354 - AluSx SINE Alu 0 312 1 913 289 181 58 chrX 90262786 90263348 -86710792 + L2 LINE L2 998 1752 -1562 243 0 0 0 chrX 90263348 90263375 -86710765 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 913 289 181 58 chrX 90263375 90263628 -86710512 + L2 LINE L2 1752 1973 -1341 268 317 91 25 chrX 90263634 90263833 -86710307 + L1ME4a LINE L1 5614 5825 -1983 5103 67 77 1 chrX 90263834 90264538 -86709602 + SVA Other Other 58 814 -572 6490 65 5 58 chrX 90264564 90265573 -86708567 + SVA Other Other 430 1385 -1 228 248 124 35 chrX 90265628 90265773 -86708367 + L1ME4a LINE L1 5869 6026 -95 349 136 68 0 chrX 90266954 90267013 -86707127 - L1MA8 LINE L1 -12 6279 6217 1038 191 50 0 chrX 90267480 90267679 -86706461 - L1PB4 LINE L1 -2 6154 5946 752 280 113 23 chrX 90267924 90268342 -86705798 + L1ME LINE L1 5256 5707 -463 1602 268 22 30 chrX 90268347 90268847 -86705293 - L2 LINE L2 -719 2595 2100 2423 75 0 0 chrX 90269448 90269743 -86704397 + AluY SINE Alu 1 295 -16 413 329 150 7 chrX 90269941 90270215 -86703925 - L2 LINE L2 0 3313 3001 335 267 0 100 chrX 90270479 90270629 -86703511 - L2 LINE L2 -219 3053 2919 420 246 95 0 chrX 90271155 90271281 -86702859 + MIR SINE MIR 93 230 -32 558 229 143 61 chrX 90273301 90273532 -86700608 + L1MC4a LINE L1 5385 5634 -487 1315 292 122 24 chrX 90273536 90274273 -86699867 + L2 LINE L2 1612 2420 -894 4855 93 3 33 chrX 90274287 90274488 -86699652 + Tigger1 DNA MER2_type 1550 1756 -662 2506 61 0 0 chrX 90274488 90274782 -86699358 + AluY SINE Alu 1 294 -17 4855 93 3 33 chrX 90274782 90274944 -86699196 + Tigger1 DNA MER2_type 1756 1921 -497 2445 57 3 7 chrX 90274944 90275244 -86698896 + AluY SINE Alu 1 299 -12 4855 93 3 33 chrX 90275244 90275575 -86698565 + Tigger1 DNA MER2_type 1921 2224 -194 934 163 16 37 chrX 90275575 90275765 -86698375 - AluJo SINE Alu -17 295 110 316 363 92 34 chrX 90275771 90276129 -86698011 - L2 LINE L2 -511 2803 2425 422 317 41 45 chrX 90276250 90276540 -86697600 - L2 LINE L2 -1158 2156 1868 202 331 183 25 chrX 90276940 90277339 -86696801 + L2 LINE L2 2249 2710 -604 182 250 0 0 chrX 90277472 90277516 -86696624 - L2 LINE L2 0 3313 3270 396 258 184 12 chrX 90278354 90278517 -86695623 - MIR SINE MIR -49 213 23 236 276 0 0 chrX 90278926 90278984 -86695156 - MIR SINE MIR -21 241 184 459 255 13 33 chrX 90279000 90279153 -86694987 + L1MC4a LINE L1 5833 5982 -1826 631 252 112 47 chrX 90279354 90279568 -86694572 + MIR SINE MIR 21 248 -14 2288 98 10 0 chrX 90279640 90279945 -86694195 - AluSq SINE Alu -5 308 1 4434 133 26 1 chrX 90279970 90280654 -86693486 - L1MA4A LINE L1 0 6303 5603 417 42 56 14 chrX 90280655 90280726 -86693414 + CT-rich Low_complexity Low_complexity 1 74 0 2341 80 0 0 chrX 90280726 90281012 -86693128 - AluSq SINE Alu -27 286 1 1924 89 32 10 chrX 90281014 90281134 -86693006 - L1MA4A LINE L1 -699 5604 5488 2214 123 0 0 chrX 90281134 90281435 -86692705 - AluSx SINE Alu -11 301 1 1924 89 32 10 chrX 90281435 90281627 -86692513 - L1MA4A LINE L1 -815 5488 5292 628 67 0 0 chrX 90281636 90281711 -86692429 - Alu SINE Alu -234 76 2 5266 164 20 6 chrX 90281712 90282673 -86691467 - L1 LINE L1 -814 5332 4359 610 331 108 19 chrX 90282703 90283072 -86691068 - L3 LINE CR1 -1017 560 159 3558 220 66 54 chrX 90283947 90284332 -86689808 - L1ME1 LINE L1 -22 6144 5765 2274 86 0 46 chrX 90284332 90284656 -86689484 + AluSc SINE Alu 1 309 0 3558 220 66 54 chrX 90284656 90285274 -86688866 - L1ME1 LINE L1 -401 5765 5112 2295 76 10 0 chrX 90285274 90285563 -86688577 + AluY SINE Alu 1 292 -19 3558 220 66 54 chrX 90285563 90285929 -86688211 - L1ME1 LINE L1 -1054 5112 4752 555 265 113 0 chrX 90287851 90288002 -86686138 - MIR SINE MIR -58 204 37 1534 161 16 4 chrX 90288048 90288297 -86685843 - L1MC1 LINE L1 -5 6328 6077 1114 220 111 20 chrX 90289842 90290237 -86683903 - L1ME4a LINE L1 -4 6117 5687 1166 181 33 21 chrX 90291533 90291776 -86682364 - MIR SINE MIR -5 257 12 267 31 0 0 chrX 90292112 90292144 -86681996 + (A)n Simple_repeat Simple_repeat 1 32 0 308 269 220 14 chrX 90293322 90293463 -86680677 + MER5B DNA MER1_type 2 171 -7 2303 106 3 0 chrX 90293554 90293856 -86680284 - AluSq SINE Alu -10 303 1 2386 71 3 0 chrX 90295226 90295522 -86678618 - AluY SINE Alu -14 297 1 1224 176 17 17 chrX 90296192 90296425 -86677715 - MIR SINE MIR -28 234 2 273 323 10 0 chrX 90297275 90297374 -86676766 + CT-rich Low_complexity Low_complexity 5 104 0 325 251 362 0 chrX 90297564 90297727 -86676413 + MIR SINE MIR 34 255 -7 393 75 0 0 chrX 90299674 90299727 -86674413 + (CA)n Simple_repeat Simple_repeat 2 54 0 2351 81 0 13 chrX 90300261 90300569 -86673571 - AluSc SINE Alu -5 304 1 1561 279 81 8 chrX 90300669 90301269 -86672871 - L2 LINE L2 0 3313 2674 902 274 212 30 chrX 90301309 90301947 -86672193 - L2 LINE L2 -1133 2181 1428 289 100 0 0 chrX 90302010 90302050 -86672090 + L2 LINE L2 3267 3306 -7 256 218 179 39 chrX 90303296 90303374 -86670766 + L2 LINE L2 3157 3245 -27 466 291 128 0 chrX 90303391 90303539 -86670601 - MIR SINE MIR 0 262 96 317 295 181 50 chrX 90303568 90304192 -86669948 + L2 LINE L2 1542 2247 -1067 199 265 99 74 chrX 90304384 90304505 -86669635 + L2 LINE L2 2929 3050 -222 643 235 26 35 chrX 90305457 90305685 -86668455 + L1MC4a LINE L1 5694 5930 -254 1234 198 33 4 chrX 90305742 90305984 -86668156 - MIR SINE MIR -12 250 2 1781 156 7 23 chrX 90306211 90306512 -86667628 + AluSx SINE Alu 1 296 -16 488 306 14 20 chrX 90306596 90306743 -86667397 + L2 LINE L2 3122 3267 -5 1864 135 40 26 chrX 90306918 90307222 -86666918 - AluJb SINE Alu -4 308 1 194 61 0 30 chrX 90307412 90307445 -86666695 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 787 131 278 0 chrX 90307849 90308025 -86666115 - L1MA4 LINE L1 -4 6296 6072 592 256 94 90 chrX 90308089 90308471 -86665669 + L1MC4a LINE L1 5579 5965 -156 2375 100 0 0 chrX 90308471 90308781 -86665359 - AluSx SINE Alu -2 310 1 592 256 94 90 chrX 90308781 90308843 -86665297 + L1MC4a LINE L1 5965 6025 -96 256 291 101 0 chrX 90309222 90309301 -86664839 - MIR SINE MIR -174 88 2 186 43 0 0 chrX 90312205 90312228 -86661912 + (TTC)n Simple_repeat Simple_repeat 1 23 0 2471 86 0 0 chrX 90312345 90312649 -86661491 - AluSp SINE Alu -9 304 1 1825 165 0 13 chrX 90312875 90313178 -86660962 + AluJo SINE Alu 1 299 -13 2145 78 0 4 chrX 90313178 90313448 -86660692 + AluSq SINE Alu 39 307 -6 288 225 9 18 chrX 90314213 90314324 -86659816 + GA-rich Low_complexity Low_complexity 2 111 0 327 296 57 116 chrX 90315032 90315142 -86658998 + L2 LINE L2 2634 2749 -564 885 169 0 96 chrX 90315142 90315320 -86658820 - FAM SINE Alu -14 161 1 2485 55 0 3 chrX 90315329 90315622 -86658518 - AluY SINE Alu -19 292 1 327 296 57 116 chrX 90315622 90316222 -86657918 + L2 LINE L2 2757 3309 -4 2656 271 96 14 chrX 90316478 90316712 -86657428 + L2 LINE L2 2008 2221 -1092 2232 106 17 0 chrX 90316712 90317014 -86657126 - AluSx SINE Alu -5 307 1 2656 271 96 14 chrX 90317014 90317432 -86656708 + L2 LINE L2 2221 2603 -710 2958 172 40 16 chrX 90317432 90317989 -86656151 + L1MB5 LINE L1 5605 6174 0 2656 271 96 14 chrX 90317989 90318552 -86655588 + L2 LINE L2 2603 3312 -1 212 264 0 19 chrX 90319050 90319103 -86655037 + MIR3 SINE MIR 124 175 -33 247 326 21 0 chrX 90319365 90319460 -86654680 + L1MC/D LINE L1 5771 5867 -1941 2876 207 25 73 chrX 90319474 90320404 -86653736 - L1ME1 LINE L1 0 6166 5272 423 275 58 26 chrX 90321695 90321884 -86652256 + HAL1b LINE L1 143 337 -1011 4759 23 0 2 chrX 90321894 90322455 -86651685 + L1P LINE L1 4752 5311 -835 6516 67 16 35 chrX 90322499 90323692 -86650448 + SVA Other Other 433 1398 0 8002 12 0 0 chrX 90323692 90324544 -86649596 + L1PA2 LINE L1 5304 6155 0 7447 113 10 1 chrX 90324546 90325797 -86648343 + L1MA2 LINE L1 5042 6303 -1 5619 158 3 13 chrX 90325838 90326750 -86647390 + L1MC1 LINE L1 5428 6330 -3 777 223 69 9 chrX 90326752 90326985 -86647155 + HAL1 LINE L1 1140 1386 -1121 694 296 5 11 chrX 90328616 90328802 -86645338 + MIR3 SINE MIR 14 198 -10 2171 152 58 9 chrX 90329111 90329459 -86644681 - MLT1A1 LTR MaLR 0 365 1 480 267 20 20 chrX 90329774 90329924 -86644216 - MER5A DNA MER1_type -3 186 37 2368 107 0 0 chrX 90330284 90330593 -86643547 - AluSx SINE Alu -3 309 1 683 306 80 30 chrX 90330625 90330988 -86643152 + L2 LINE L2 1979 2359 -955 343 218 7 28 chrX 90331050 90331192 -86642948 + G-rich Low_complexity Low_complexity 1 139 0 4034 166 95 41 chrX 90331244 90332405 -86641735 + L1MB7 LINE L1 4151 5248 -936 483 18 0 0 chrX 90332405 90332461 -86641679 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 4034 166 95 41 chrX 90332461 90332498 -86641642 + L1MB7 LINE L1 5248 5282 -902 2095 115 0 17 chrX 90332498 90332793 -86641347 + AluSx SINE Alu 1 290 -22 4034 166 95 41 chrX 90332793 90333333 -86640807 + L1MB7 LINE L1 5282 5997 -187 302 169 0 0 chrX 90333336 90333395 -86640745 + L1MB7 LINE L1 6110 6168 -16 2022 128 0 26 chrX 90333422 90333726 -86640414 + AluSx SINE Alu 1 296 -16 304 294 21 88 chrX 90333787 90333981 -86640159 + L1ME4a LINE L1 5427 5607 -2201 1831 188 38 28 chrX 90334014 90334440 -86639700 + MLT1C LTR MaLR 10 439 -28 628 269 42 62 chrX 90334470 90334730 -86639410 + L1ME4a LINE L1 5635 5889 -232 565 115 0 0 chrX 90334751 90334829 -86639311 - MLT1A1 LTR MaLR 0 365 288 1361 300 69 58 chrX 90335451 90336660 -86637480 - HERVI LTR ERV1 -138 6511 5290 342 269 0 28 chrX 90337063 90337171 -86636969 - HERVI LTR ERV1 -3768 3128 3024 395 283 0 0 chrX 90337393 90337506 -86636634 - HERVI LTR ERV1 -2029 5756 5644 193 259 111 37 chrX 90337511 90337592 -86636548 - MIR SINE MIR -160 102 16 2407 89 0 13 chrX 90337655 90337968 -86636172 + AluY SINE Alu 1 309 -2 1782 325 30 28 chrX 90338023 90339345 -86634795 - HERVI LTR ERV1 -2320 5465 4142 2063 313 36 29 chrX 90339448 90339596 -86634544 - HERVI LTR ERV1 -3673 4112 3966 2000 73 0 0 chrX 90339596 90339855 -86634285 - L1PA7 LINE L1 -2 6152 5894 2063 313 36 29 chrX 90339855 90340940 -86633200 - HERVI LTR ERV1 -3819 3966 2871 719 316 38 36 chrX 90341570 90342135 -86632005 - HERVI LTR ERV1 -5702 2083 1515 2050 145 0 23 chrX 90342135 90342445 -86631695 + AluSx SINE Alu 1 303 -9 719 316 38 36 chrX 90342445 90342459 -86631681 - HERVI LTR ERV1 -6270 1515 1503 207 100 0 0 chrX 90342565 90342595 -86631545 + (T)n Simple_repeat Simple_repeat 1 30 0 1495 71 0 0 chrX 90342765 90342949 -86631191 - AluY SINE Alu -20 291 108 491 333 9 4 chrX 90342982 90343207 -86630933 - HERVI LTR ERV1 -6782 1003 778 372 256 64 13 chrX 90343445 90343601 -86630539 - HERVI LTR ERV1 -6279 370 207 1287 174 59 37 chrX 90344239 90344533 -86629607 - MLT1A1 LTR MaLR -68 322 1 22 0 0 0 chrX 90344544 90344566 -86629574 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 90344585 90344609 -86629531 + (CA)n Simple_repeat Simple_repeat 2 25 0 467 270 48 137 chrX 90344791 90345106 -86629034 + L2 LINE L2 2872 3158 -114 235 311 76 38 chrX 90345396 90345528 -86628612 + L2 LINE L2 2869 3005 -267 1237 240 54 15 chrX 90345727 90346118 -86628022 + HAL1b LINE L1 440 845 -503 964 203 16 72 chrX 90346131 90346382 -86627758 - MIR SINE MIR -11 251 15 500 245 80 5 chrX 90346384 90346572 -86627568 + HAL1b LINE L1 884 1085 -263 1549 199 7 4 chrX 90346713 90347047 -86627093 - AluJo SINE Alu 0 336 2 416 198 62 21 chrX 90347051 90347147 -86626993 - MIR SINE MIR -49 213 114 371 215 47 28 chrX 90347147 90347254 -86626886 + HAL1b LINE L1 1239 1347 -1 1617 301 65 11 chrX 90347289 90347900 -86626240 + L2 LINE L2 2115 2758 -556 529 233 29 0 chrX 90347931 90348034 -86626106 + FLAM_A SINE Alu 13 118 -24 557 235 126 91 chrX 90348072 90348566 -86625574 + MLT1J LTR MaLR 1 511 0 1033 301 18 86 chrX 90348577 90349066 -86625074 + L2 LINE L2 2816 3271 -1 369 356 26 21 chrX 90349351 90349542 -86624598 - L2 LINE L2 -215 3057 2866 816 360 101 16 chrX 90349856 90350423 -86623717 - L2 LINE L2 -475 2839 2225 190 261 145 0 chrX 90350534 90350603 -86623537 - L2 LINE L2 -798 2516 2438 582 326 75 47 chrX 90350645 90350681 -86623459 - L2 LINE L2 -866 2448 2414 2254 169 18 5 chrX 90350681 90351066 -86623074 + MLT1B LTR MaLR 1 390 0 582 326 75 47 chrX 90351066 90351391 -86622749 - L2 LINE L2 -900 2414 2077 336 276 0 11 chrX 90351520 90351607 -86622533 + L2 LINE L2 3227 3312 -1 21 0 0 0 chrX 90353112 90353133 -86621007 + AT_rich Low_complexity Low_complexity 1 21 0 312 83 0 0 chrX 90355281 90355329 -86618811 + (CA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chrX 90356365 90356385 -86617755 + (A)n Simple_repeat Simple_repeat 1 20 0 336 253 0 33 chrX 90356800 90356891 -86617249 - MIR SINE MIR -135 127 40 361 77 0 0 chrX 90357833 90357885 -86616255 - MADE1 DNA Mariner 0 80 29 894 256 54 16 chrX 90361398 90361640 -86612500 - MIR SINE MIR -9 253 3 207 0 0 0 chrX 90362270 90362293 -86611847 + (TTC)n Simple_repeat Simple_repeat 2 24 0 1003 65 24 0 chrX 90362293 90362417 -86611723 - AluY SINE Alu -184 127 1 226 70 0 47 chrX 90362452 90362495 -86611645 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 1899 128 44 0 chrX 90363044 90363163 -86610977 + AluSx SINE Alu 1 113 -199 216 0 0 0 chrX 90363163 90363187 -86610953 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1899 128 44 0 chrX 90363187 90363365 -86610775 + AluSx SINE Alu 113 311 -1 1397 139 32 0 chrX 90365358 90365609 -86608531 + L1MD3 LINE L1 7729 7987 -8 191 268 99 14 chrX 90365666 90365737 -86608403 - L2 LINE L2 0 3313 3237 2095 92 42 0 chrX 90366981 90367287 -86606853 + MER39B LTR ERV1 1 319 -334 26 0 0 0 chrX 90368504 90368530 -86605610 + AT_rich Low_complexity Low_complexity 1 26 0 2222 104 0 66 chrX 90368536 90368727 -86605413 - L1PB1 LINE L1 0 6151 5949 2327 55 0 45 chrX 90368727 90369037 -86605103 - AluY SINE Alu -15 296 1 2222 104 0 66 chrX 90369037 90369152 -86604988 - L1PB1 LINE L1 -202 5949 5874 2323 66 3 7 chrX 90369152 90369453 -86604687 + AluY SINE Alu 1 300 -11 2222 104 0 66 chrX 90369453 90369538 -86604602 - L1PB1 LINE L1 -277 5874 5785 665 233 0 6 chrX 90369559 90369739 -86604401 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 2670 84 0 0 chrX 90369740 90370120 -86604020 - L1PB1 LINE L1 -360 5791 5412 2212 87 43 10 chrX 90370562 90370862 -86603278 + AluSg SINE Alu 1 310 0 1287 129 5 14 chrX 90371733 90371943 -86602197 + MER2 DNA MER2_type 3 210 -135 209 216 0 20 chrX 90372200 90372251 -86601889 + GA-rich Low_complexity Low_complexity 1 50 0 247 235 15 15 chrX 90374335 90374403 -86599737 - MLT1J LTR MaLR -7 504 437 730 259 101 58 chrX 90374429 90374776 -86599364 - MLT1J LTR MaLR -149 362 1 431 284 15 56 chrX 90377107 90377304 -86596836 - MER5A DNA MER1_type 0 189 1 3526 105 13 11 chrX 90377341 90377816 -86596324 + MER41A LTR ERV1 1 479 -75 4223 78 4 0 chrX 90377816 90378367 -86595773 - MER41A LTR ERV1 -1 553 1 3526 105 13 11 chrX 90378367 90378444 -86595696 + MER41A LTR ERV1 479 554 0 800 183 120 42 chrX 90378637 90378878 -86595262 - MIR SINE MIR 0 262 3 3916 129 24 2 chrX 90379064 90379683 -86594457 + MER41B LTR ERV1 3 635 0 366 302 0 0 chrX 90379800 90379896 -86594244 + MER34 LTR ERV1 1 96 -446 1374 218 92 23 chrX 90379903 90380338 -86593802 + LTR48B LTR ERV1 151 615 -29 556 249 49 92 chrX 90381299 90381684 -86592456 + L1ME LINE L1 5435 5804 -317 1504 207 27 127 chrX 90381803 90382441 -86591699 + L1MB7 LINE L1 -246 327 -5953 1675 128 0 0 chrX 90382442 90382668 -86591472 + AluSg/x SINE Alu 71 296 -14 2509 253 64 44 chrX 90382676 90383691 -86590449 + L1MB7 LINE L1 1030 2197 -4366 2201 61 11 4 chrX 90383691 90384006 -86590134 - AluSx SINE Alu 0 317 1 2509 253 64 44 chrX 90384006 90384344 -86589796 + L1MB7 LINE L1 2197 2527 -4036 1188 119 0 0 chrX 90384326 90384519 -86589621 + L1 LINE L1 4630 4822 -1324 * 6379 84 5 27 chrX 90384519 90385383 -86588757 + L1PA11 LINE L1 4979 5860 -314 2172 110 0 0 chrX 90385383 90385664 -86588476 + AluSc SINE Alu 1 281 -28 302 128 0 0 chrX 90385625 90385664 -86588476 + AluSc SINE Alu 243 338 0 430 70 0 0 chrX 90385664 90385721 -86588419 + (TAA)n Simple_repeat Simple_repeat 2 180 0 6379 84 5 27 chrX 90385721 90386070 -86588070 + L1PA11 LINE L1 5858 6173 -1 21 36 0 0 chrX 90386099 90386127 -86588013 + AT_rich Low_complexity Low_complexity 1 28 0 4164 231 28 21 chrX 90386248 90387088 -86587052 + L1MB7 LINE L1 3394 4247 -2135 2739 26 0 0 chrX 90387088 90387392 -86586748 + AluY SINE Alu 8 311 0 4164 231 28 21 chrX 90387392 90387716 -86586424 + L1MB7 LINE L1 4247 4567 -1815 3664 211 38 29 chrX 90387702 90388866 -86585274 + L1MB7 LINE L1 5178 6329 -91 * 1808 41 0 5 chrX 90388866 90389085 -86585055 + AluY SINE Alu 77 294 -17 3664 211 38 29 chrX 90389085 90389101 -86585039 + L1MB7 LINE L1 6329 6343 -77 2214 117 3 3 chrX 90389101 90389410 -86584730 + AluJb SINE Alu 1 309 -3 3664 211 38 29 chrX 90389410 90389450 -86584690 + L1MB7 LINE L1 6343 6405 -15 1036 214 15 10 chrX 90389478 90389684 -86584456 - MIR SINE MIR -41 221 15 5478 49 3 0 chrX 90390746 90391379 -86582761 - L1PA5 LINE L1 0 6154 5520 1992 84 53 11 chrX 90391460 90391727 -86582413 + AluSg SINE Alu 1 282 -28 276 100 0 0 chrX 90391727 90391767 -86582373 + (CA)n Simple_repeat Simple_repeat 1 40 0 1992 84 53 11 chrX 90391767 90391783 -86582357 + AluSg SINE Alu 282 296 -14 2248 88 3 3 chrX 90391835 90392129 -86582011 - AluSp SINE Alu -19 294 1 2464 46 0 3 chrX 90393676 90393985 -86580155 - AluY SINE Alu 0 308 1 2251 114 0 0 chrX 90394816 90395114 -86579026 - AluSq SINE Alu -15 298 1 791 32 11 0 chrX 90395762 90395856 -86578284 - L1PA8 LINE L1 -6 6166 6072 527 217 153 19 chrX 90398252 90398409 -86575731 + MER3 DNA MER1_type 23 200 -9 1127 8 48 0 chrX 90398877 90399003 -86575137 - L1PA7 LINE L1 -2 6152 6021 2145 101 3 7 chrX 90399133 90399420 -86574720 + AluSx SINE Alu 9 294 -18 665 157 0 33 chrX 90399841 90399962 -86574178 + FRAM SINE Alu 60 176 0 2420 70 0 10 chrX 90400039 90400338 -86573802 + AluY SINE Alu 1 296 -15 2327 57 7 33 chrX 90401501 90401801 -86572339 - AluY SINE Alu -19 292 1 190 286 0 0 chrX 90404753 90404795 -86569345 + L2 LINE L2 3180 3221 -92 424 309 12 36 chrX 90405884 90406052 -86568088 - MIR SINE MIR -16 246 83 21 0 0 0 chrX 90407168 90407189 -86566951 + AT_rich Low_complexity Low_complexity 1 21 0 225 94 0 0 chrX 90407291 90407323 -86566817 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2485 58 0 0 chrX 90407765 90408059 -86566081 - AluY SINE Alu -17 294 1 268 304 83 89 chrX 90408655 90409050 -86565090 - L2 LINE L2 -31 3241 2849 305 80 0 20 chrX 90409203 90409253 -86564887 + (TC)n Simple_repeat Simple_repeat 2 50 0 318 107 0 0 chrX 90409253 90409309 -86564831 + (CA)n Simple_repeat Simple_repeat 1 56 0 277 347 126 0 chrX 90409658 90409753 -86564387 + L2 LINE L2 3150 3256 -16 589 216 67 15 chrX 90409784 90409918 -86564222 + L2 LINE L2 3169 3309 -4 283 200 213 12 chrX 90409935 90410015 -86564125 + L2 LINE L2 3175 3270 -2 2272 98 7 13 chrX 90410033 90410340 -86563800 - AluSg SINE Alu -5 305 1 186 267 0 0 chrX 90410357 90410402 -86563738 + L2 LINE L2 3256 3300 -13 205 204 41 0 chrX 90411449 90411498 -86562642 + GA-rich Low_complexity Low_complexity 4 54 0 210 304 0 25 chrX 90411994 90412073 -86562067 + CT-rich Low_complexity Low_complexity 4 80 0 754 243 6 34 chrX 90412673 90412850 -86561290 - MIR SINE MIR -84 178 7 231 188 0 21 chrX 90415006 90415054 -86559086 - L2 LINE L2 0 3313 3267 476 272 67 39 chrX 90415902 90416082 -86558058 + MIR SINE MIR 35 219 -43 197 333 151 11 chrX 90417978 90418071 -86556069 + MIR SINE MIR 32 137 -71 312 318 83 37 chrX 90418280 90418497 -86555643 - L2 LINE L2 -215 3057 2831 2067 132 0 26 chrX 90418501 90418811 -86555329 + AluSx SINE Alu 1 302 -10 307 312 18 28 chrX 90418873 90418982 -86555158 + L3 LINE CR1 1462 1569 -8 32 26 0 0 chrX 90420413 90420452 -86553688 + AT_rich Low_complexity Low_complexity 1 39 0 2184 166 22 11 chrX 90422353 90422714 -86551426 + MLT1A1 LTR MaLR 1 365 0 549 325 177 23 chrX 90422723 90423157 -86550983 + L2 LINE L2 2197 2697 -617 654 291 42 29 chrX 90423203 90423386 -86550754 - MIR SINE MIR -17 245 57 2164 127 3 3 chrX 90423386 90423693 -86550447 + AluSx SINE Alu 1 307 -5 654 291 42 29 chrX 90423693 90423750 -86550390 - MIR SINE MIR -205 57 2 367 320 40 13 chrX 90423778 90423928 -86550212 + L2 LINE L2 3155 3308 -5 270 140 0 88 chrX 90426306 90426363 -86547777 - L2 LINE L2 0 3313 3262 265 238 0 16 chrX 90426854 90426917 -86547223 - MIR SINE MIR 0 262 201 711 269 53 14 chrX 90427154 90427362 -86546778 - MIR SINE MIR -31 231 16 253 267 86 52 chrX 90427427 90427543 -86546597 + MIR SINE MIR 72 191 -71 646 260 186 44 chrX 90427724 90428062 -86546078 + L2 LINE L2 2925 3310 -3 2537 181 85 6 chrX 90428066 90428598 -86545542 + MER50 LTR ERV1 1 574 -160 246 197 197 0 chrX 90429250 90429311 -86544829 + LTR16A LTR ERVL 337 409 -41 534 216 39 59 chrX 90429319 90429472 -86544668 - MIR SINE MIR -54 208 59 21 0 0 0 chrX 90430337 90430358 -86543782 + AT_rich Low_complexity Low_complexity 1 21 0 235 291 35 35 chrX 90430800 90430886 -86543254 + L2 LINE L2 3187 3272 0 2518 67 3 0 chrX 90431135 90431435 -86542705 - AluSg SINE Alu -9 301 1 2325 87 0 10 chrX 90431488 90431787 -86542353 - AluSx SINE Alu -16 296 1 473 230 149 40 chrX 90432527 90432806 -86541334 - L1MC4a LINE L1 -157 5964 5656 3238 166 51 33 chrX 90432823 90433456 -86540684 + L1MB7 LINE L1 5541 6184 0 2315 225 121 44 chrX 90433717 90434308 -86539832 - L1ME4a LINE L1 0 6121 5452 2442 80 0 13 chrX 90434308 90434621 -86539519 - AluSq SINE Alu -2 311 3 2315 225 121 44 chrX 90434621 90434825 -86539315 - L1ME4a LINE L1 -669 5452 5265 1341 229 68 37 chrX 90435621 90435975 -86538165 + MLT1A1 LTR MaLR 1 365 0 572 227 23 8 chrX 90436443 90436575 -86537565 - MIR SINE MIR -21 241 108 964 286 0 20 chrX 90436804 90437049 -86537091 + MIR SINE MIR 13 252 -10 255 296 91 11 chrX 90437595 90437683 -86536457 + MIR SINE MIR 68 162 -100 23 0 0 0 chrX 90437777 90437800 -86536340 + AT_rich Low_complexity Low_complexity 1 23 0 334 322 33 20 chrX 90438490 90438642 -86535498 + L1MC4a LINE L1 5574 5727 -2081 249 368 22 0 chrX 90438745 90438881 -86535259 + L1MC4a LINE L1 5792 5930 -1878 187 289 133 33 chrX 90439304 90439394 -86534746 - L2 LINE L2 0 3313 3215 422 321 7 0 chrX 90439489 90439626 -86534514 + MIR SINE MIR 115 252 -10 548 304 32 53 chrX 90439686 90440061 -86534079 + L1PA15 LINE L1 1 367 -7214 4774 218 18 17 chrX 90441174 90442826 -86531314 + L1PA15 LINE L1 2319 3991 -3593 8840 112 108 19 chrX 90442826 90444275 -86529865 + THE1C-int LTR MaLR 2 1579 -1 2022 150 18 71 chrX 90444275 90444669 -86529471 + THE1C LTR MaLR 3 375 0 1772 225 11 40 chrX 90444669 90444947 -86529193 + L1PA15 LINE L1 3987 4272 -3312 2183 138 0 0 chrX 90444947 90445244 -86528896 + AluSx SINE Alu 1 297 -15 963 135 0 0 chrX 90445244 90445400 -86528740 + (GGGA)n Simple_repeat Simple_repeat 2 157 0 1028 40 20 13 chrX 90445401 90445552 -86528588 + (GAAA)n Simple_repeat Simple_repeat 2 153 0 1772 225 11 40 chrX 90445552 90445745 -86528395 + L1PA15 LINE L1 4270 4447 -3137 1041 92 0 0 chrX 90445764 90445905 -86528235 - L1PA13 LINE L1 -2 6161 6021 12591 172 4 29 chrX 90445908 90447853 -86526287 + L1PA15 LINE L1 4433 6424 -1179 2538 144 11 3 chrX 90447853 90448214 -86525926 - THE1B LTR MaLR 0 364 1 12591 172 4 29 chrX 90448214 90448761 -86525379 + L1PA15 LINE L1 6424 6983 -620 2324 138 30 16 chrX 90448761 90449131 -86525009 + THE1C LTR MaLR 1 375 0 12591 172 4 29 chrX 90449131 90449853 -86524287 + L1PA15 LINE L1 6983 7602 -1 1048 197 114 0 chrX 90449899 90450127 -86524013 - MIR SINE MIR -1 261 8 445 226 78 0 chrX 90450199 90450301 -86523839 - L2 LINE L2 -1 3312 3203 2404 76 0 7 chrX 90450310 90450614 -86523526 + AluSx SINE Alu 1 302 -10 801 237 172 0 chrX 90451437 90451652 -86522488 + MIR SINE MIR 4 255 -7 325 341 29 0 chrX 90451643 90451781 -86522359 + L2 LINE L2 2115 2256 -1058 * 433 224 35 17 chrX 90453148 90453264 -86520876 + L2 LINE L2 3194 3311 -2 2079 260 71 25 chrX 90453603 90454191 -86519949 + MLT2E LTR ERVL 11 625 -3 843 290 87 35 chrX 90454462 90455263 -86518877 - L1ME3 LINE L1 -95 6026 5192 228 169 0 51 chrX 90455497 90455556 -86518584 + T-rich Low_complexity Low_complexity 3 58 0 312 265 56 43 chrX 90455816 90455978 -86518162 - L1ME3 LINE L1 -1310 4836 4673 885 151 41 0 chrX 90456001 90456147 -86517993 - L1PA13 LINE L1 0 6163 6012 5408 226 143 18 chrX 90456147 90456301 -86517839 - L1PA13 LINE L1 -2704 4093 3960 2100 122 0 3 chrX 90456301 90456597 -86517543 - AluSx SINE Alu -17 295 1 5408 226 143 18 chrX 90456597 90458506 -86515634 - L1PA13 LINE L1 -2837 3960 1545 182 88 0 29 chrX 90458506 90458540 -86515600 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 5408 226 143 18 chrX 90458540 90458952 -86515188 - L1PA13 LINE L1 -5252 1545 1186 295 156 0 0 chrX 90458960 90459005 -86515135 + MSTC LTR MaLR 384 428 0 1926 127 56 3 chrX 90459005 90459178 -86514962 - L1 LINE L1 -1699 4447 4285 225 0 0 0 chrX 90459178 90459203 -86514937 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1926 127 56 3 chrX 90459203 90459369 -86514771 - L1 LINE L1 -1861 4285 4090 6199 149 14 23 chrX 90459371 90460733 -86513407 + L1MA7 LINE L1 4776 6120 -171 2340 85 3 0 chrX 90460733 90461027 -86513113 + AluSp SINE Alu 1 295 -18 6199 149 14 23 chrX 90461027 90461198 -86512942 + L1MA7 LINE L1 6120 6291 0 1529 283 47 28 chrX 90461255 90461764 -86512376 + LTR33 LTR ERVL 3 521 0 362 319 136 25 chrX 90461825 90462104 -86512036 - LTR33 LTR ERVL -211 310 1 453 240 10 20 chrX 90462115 90462215 -86511925 + L2 LINE L2 3203 3301 -12 538 317 29 17 chrX 90462215 90462455 -86511685 + HAL1b LINE L1 446 688 -660 245 231 0 15 chrX 90462474 90462539 -86511601 + L1ME4a LINE L1 5636 5699 -422 351 243 135 9 chrX 90462539 90462650 -86511490 + MLT1J LTR MaLR 1 125 -386 277 163 0 0 chrX 90462827 90462870 -86511270 - L1PA13 LINE L1 -4912 1875 1833 * 4055 184 19 6 chrX 90462855 90463621 -86510519 + L1PA13 LINE L1 4113 4868 -1278 1458 30 0 0 chrX 90463621 90463787 -86510353 + L1PA4 LINE L1 5990 6155 0 * 6522 86 35 10 chrX 90463779 90465055 -86509085 + L1PA13 LINE L1 4869 6163 0 4055 184 19 6 chrX 90463787 90465098 -86509042 + L1PA13 LINE L1 4868 4925 -1221 262 162 40 54 chrX 90465126 90465200 -86508940 + MLT1J1 LTR MaLR 353 425 -21 598 246 92 49 chrX 90465211 90465560 -86508580 + L1ME4a LINE L1 5752 6115 -6 2507 51 0 0 chrX 90465562 90465855 -86508285 + AluY SINE Alu 1 293 -18 724 284 117 12 chrX 90470160 90470417 -86503723 + L2 LINE L2 1875 2158 -1156 868 204 33 6 chrX 90470428 90470609 -86503531 + MIR SINE MIR 6 191 -71 2378 70 0 3 chrX 90470615 90470914 -86503226 + AluY SINE Alu 3 300 -11 1163 132 0 0 chrX 90470914 90471073 -86503067 + AluSg/x SINE Alu 134 292 -20 180 0 0 0 chrX 90471081 90471101 -86503039 + (TA)n Simple_repeat Simple_repeat 2 21 0 221 167 36 12 chrX 90471135 90471219 -86502921 + (TA)n Simple_repeat Simple_repeat 1 86 0 223 200 117 0 chrX 90471231 90471291 -86502849 + MIR SINE MIR 196 262 0 224 265 0 0 chrX 90471291 90471340 -86502800 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2304 297 61 24 chrX 90471340 90471460 -86502680 + L2 LINE L2 2152 2266 -1047 3018 209 9 34 chrX 90471460 90472028 -86502112 - MLT2B3 LTR ERVL 0 554 1 2304 297 61 24 chrX 90472028 90473028 -86501112 + L2 LINE L2 2266 3313 0 465 326 92 0 chrX 90473047 90473231 -86500909 - MIR SINE MIR -42 220 20 198 103 0 0 chrX 90473246 90473275 -86500865 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 316 371 30 8 chrX 90473276 90473408 -86500732 - L2 LINE L2 -16 3256 3122 1022 246 54 9 chrX 90473479 90473703 -86500437 + MIR SINE MIR 29 262 0 190 237 35 133 chrX 90473706 90473879 -86500261 - L2 LINE L2 -184 3088 2933 253 318 12 0 chrX 90475606 90475691 -86498449 - MIR SINE MIR -14 248 163 323 237 17 85 chrX 90476606 90476655 -86497485 - MIR3 SINE MIR -6 202 151 936 158 152 0 chrX 90476655 90476819 -86497321 - MER5A DNA MER1_type 0 189 1 323 237 17 85 chrX 90476819 90476887 -86497253 - MIR3 SINE MIR -57 151 93 311 270 79 8 chrX 90476880 90476999 -86497141 - MIR SINE MIR -103 105 21 * 565 273 154 50 chrX 90477018 90477238 -86496902 + MIR SINE MIR 19 261 -1 233 196 18 18 chrX 90477767 90477823 -86496317 - MIR SINE MIR -129 79 24 545 185 101 0 chrX 90477896 90478015 -86496125 - L1ME3A LINE L1 -9 6161 6031 225 196 0 0 chrX 90478845 90478901 -86495239 + CT-rich Low_complexity Low_complexity 1 56 0 671 312 131 32 chrX 90478938 90479281 -86494859 + L2 LINE L2 2937 3313 0 436 269 31 31 chrX 90479352 90479482 -86494658 + MIR SINE MIR 21 150 -112 226 163 23 0 chrX 90479980 90480023 -86494117 + CT-rich Low_complexity Low_complexity 3 46 0 1835 125 12 22 chrX 90480093 90480436 -86493704 - MER4A LTR ERV1 -6 658 261 620 82 31 21 chrX 90480436 90480533 -86493607 - MER4A LTR ERV1 -566 98 1 576 267 34 14 chrX 90480588 90480734 -86493406 - MIR3 SINE MIR -20 188 40 2308 51 3 17 chrX 90480749 90481065 -86493075 - AluY SINE Alu 0 334 23 1425 264 129 11 chrX 90481233 90481699 -86492441 - LTR33 LTR ERVL 0 521 1 435 248 7 80 chrX 90481710 90481857 -86492283 - MIR SINE MIR -65 143 32 195 198 70 116 chrX 90483425 90483511 -86490629 - L2 LINE L2 -1 3312 3231 237 310 0 28 chrX 90485753 90485824 -86488316 - L2 LINE L2 0 3313 3245 1527 146 0 0 chrX 90486758 90487004 -86487136 + L1 LINE L1 4078 4323 -1823 7670 132 17 19 chrX 90487771 90488394 -86485746 + L1MA5 LINE L1 3960 4583 -1717 1769 172 0 10 chrX 90488394 90488691 -86485449 + AluJb SINE Alu 12 305 -7 7670 132 17 19 chrX 90488691 90490418 -86483722 + L1MA5 LINE L1 4583 6300 0 223 314 196 20 chrX 90490428 90490530 -86483610 + MIR SINE MIR 24 143 -65 347 297 63 58 chrX 90490858 90491159 -86482981 - HAL1 LINE L1 -963 1544 1239 9208 25 1 0 chrX 90491159 90493042 -86481098 - L1PA3 LINE L1 0 6155 4291 347 297 63 58 chrX 90493042 90493167 -86480973 - HAL1 LINE L1 -1268 1239 1116 1698 169 3 50 chrX 90493225 90493527 -86480613 - AluJb SINE Alu -22 290 3 24 32 0 0 chrX 90493537 90493568 -86480572 + AT_rich Low_complexity Low_complexity 1 31 0 4289 251 45 37 chrX 90493575 90494955 -86479185 + L1MEc LINE L1 37 1405 -4991 2321 79 3 0 chrX 90494955 90495247 -86478893 + AluSp SINE Alu 1 293 -20 4289 251 45 37 chrX 90495247 90495369 -86478771 + L1MEc LINE L1 1405 1525 -4871 3597 51 0 9 chrX 90495369 90495765 -86478375 + MLT2A1 LTR ERVL 1 394 -50 330 26 0 0 chrX 90495765 90495804 -86478336 + (CA)n Simple_repeat Simple_repeat 2 40 0 3597 51 0 9 chrX 90495804 90495855 -86478285 + MLT2A1 LTR ERVL 394 444 0 4289 251 45 37 chrX 90495855 90496015 -86478125 + L1MEc LINE L1 1525 1713 -4683 * 5443 164 22 24 chrX 90496014 90496923 -86477217 + L1MC3 LINE L1 6705 7614 -171 2507 52 0 10 chrX 90496923 90497232 -86476908 + AluY SINE Alu 1 306 -5 5443 164 22 24 chrX 90497232 90497261 -86476879 + L1MC3 LINE L1 7614 7642 -143 2657 97 106 7 chrX 90497261 90497684 -86476456 - MER4C LTR ERV1 0 465 1 5443 164 22 24 chrX 90497684 90497749 -86476391 + L1MC3 LINE L1 7642 7707 -78 387 0 0 0 chrX 90497767 90497810 -86476330 + (TG)n Simple_repeat Simple_repeat 2 44 0 2531 46 0 7 chrX 90497819 90498121 -86476019 - AluY SINE Alu -11 300 1 723 270 73 0 chrX 90498767 90498971 -86475169 - MIR SINE MIR -24 238 20 2286 95 0 3 chrX 90499085 90499379 -86474761 + AluSc SINE Alu 3 295 -14 770 282 123 53 chrX 90499658 90500294 -86473846 + L1MC4a LINE L1 5346 6028 -93 200 182 0 0 chrX 90500379 90500412 -86473728 + GA-rich Low_complexity Low_complexity 1 33 0 222 118 0 0 chrX 90500746 90500780 -86473360 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 499 226 203 0 chrX 90501827 90501960 -86472180 + MER5A DNA MER1_type 12 171 -18 209 276 103 52 chrX 90502113 90502229 -86471911 - L2 LINE L2 -10 3303 3182 28 79 0 0 chrX 90503027 90503090 -86471050 + AT_rich Low_complexity Low_complexity 1 63 0 186 337 61 37 chrX 90503118 90503364 -86470776 + L2 LINE L2 1746 1997 -1317 321 256 51 0 chrX 90503387 90503504 -86470636 - L1MC4 LINE L1 -2 8040 7918 210 204 0 41 chrX 90503507 90503556 -86470584 + CT-rich Low_complexity Low_complexity 2 48 0 422 221 241 11 chrX 90503840 90504102 -86470038 - L1ME4a LINE L1 -9 6112 5791 550 293 93 43 chrX 90504124 90504639 -86469501 + L1ME4a LINE L1 5297 5837 -284 2482 60 0 3 chrX 90504668 90504968 -86469172 + AluY SINE Alu 11 309 -2 4055 175 70 17 chrX 90505156 90506502 -86467638 - L1MB8 LINE L1 -2 6176 4761 495 296 37 19 chrX 90506569 90506785 -86467355 - L1ME4a LINE L1 -318 5803 5584 221 196 0 22 chrX 90506789 90506835 -86467305 + GA-rich Low_complexity Low_complexity 4 48 0 228 323 11 22 chrX 90506887 90506978 -86467162 + MIR SINE MIR 59 147 -64 22 0 0 0 chrX 90507163 90507185 -86466955 + AT_rich Low_complexity Low_complexity 1 22 0 764 202 144 0 chrX 90507834 90508007 -86466133 + LTR40a LTR ERVL 3 200 -319 * 2206 220 16 5 chrX 90507989 90508421 -86465719 + LTR53 LTR ERVL 83 519 0 1392 203 77 31 chrX 90508430 90508755 -86465385 + LTR40b LTR ERVL 123 462 0 228 67 0 0 chrX 90508996 90509026 -86465114 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 265 246 18 0 chrX 90509963 90510020 -86464120 - MER113 DNA MER1_type? 0 521 464 25 51 0 0 chrX 90510160 90510199 -86463941 + AT_rich Low_complexity Low_complexity 1 39 0 2425 67 3 3 chrX 90510555 90510852 -86463288 - AluSp SINE Alu -16 297 1 206 245 20 0 chrX 90510998 90511047 -86463093 + (TG)n Simple_repeat Simple_repeat 1 50 0 1170 167 4 52 chrX 90511149 90511382 -86462758 + L1MB3 LINE L1 5661 5882 -301 962 168 47 0 chrX 90511385 90511575 -86462565 + L1MB3 LINE L1 5975 6173 -10 203 176 39 0 chrX 90511589 90511640 -86462500 + GA-rich Low_complexity Low_complexity 3 55 0 400 307 168 24 chrX 90511642 90512065 -86462075 + HAL1 LINE L1 228 711 -1796 1167 285 145 24 chrX 90512197 90513285 -86460855 - L1MC4a LINE L1 -743 5403 4787 2381 81 0 0 chrX 90513285 90513582 -86460558 - AluSp SINE Alu -16 297 1 1167 285 145 24 chrX 90513582 90514161 -86459979 - L1MC4a LINE L1 -1359 4787 4280 325 250 52 17 chrX 90514238 90514354 -86459786 + HAL1 LINE L1 947 1066 -1441 241 322 45 25 chrX 90514486 90514645 -86459495 + MIR SINE MIR 40 201 -43 4048 171 38 13 chrX 90514894 90515365 -86458775 - L1MA9 LINE L1 -38 6274 5773 5394 118 10 9 chrX 90515365 90516779 -86457361 - L1PA16 LINE L1 0 6166 4718 4048 171 38 13 chrX 90516779 90517103 -86457037 - L1MA9 LINE L1 -539 5773 5459 2312 141 77 83 chrX 90517100 90517827 -86456313 + L1MA9 LINE L1 4757 5455 -743 * 1960 183 55 24 chrX 90517848 90518263 -86455877 + MSTA LTR MaLR 1 428 0 708 323 36 12 chrX 90518500 90518748 -86455392 - MIR SINE MIR -1 261 8 594 240 82 6 chrX 90519067 90519238 -86454902 - MER46C DNA MER2_type -153 185 2 23 33 0 0 chrX 90519247 90519277 -86454863 + AT_rich Low_complexity Low_complexity 1 30 0 10686 186 61 81 chrX 90519278 90520032 -86454108 - L1MB1 LINE L1 -4 5988 5220 3002 145 19 21 chrX 90520032 90520604 -86453536 - L1MA4 LINE L1 -9 6291 5721 10686 186 61 81 chrX 90520604 90521432 -86452708 - L1MB1 LINE L1 -772 5220 4377 2712 82 27 0 chrX 90521432 90521808 -86452332 - L1PA11 LINE L1 -2 6172 5787 10686 186 61 81 chrX 90521808 90523283 -86450857 - L1MB1 LINE L1 -1615 4377 2874 839 167 0 22 chrX 90523283 90523421 -86450719 + FRAM SINE Alu 18 152 -24 10686 186 61 81 chrX 90523421 90524220 -86449920 - L1MB1 LINE L1 -3118 2874 2061 5778 53 4 0 chrX 90524220 90524936 -86449204 + L1PA6 LINE L1 5435 6153 -1 10686 186 61 81 chrX 90524936 90525330 -86448810 - L1MB1 LINE L1 -3931 2061 1661 294 50 0 0 chrX 90525330 90525370 -86448770 + (CA)n Simple_repeat Simple_repeat 2 41 0 10686 186 61 81 chrX 90525370 90527404 -86446736 - L1MB1 LINE L1 -4331 1661 188 4696 61 20 0 chrX 90527404 90528011 -86446129 - L1PA6 LINE L1 -11 6143 5525 10686 186 61 81 chrX 90528011 90528195 -86445945 - L1MB1 LINE L1 -5804 188 2 5963 56 0 4 chrX 90528259 90529008 -86445132 - L1PA7 LINE L1 -14 6140 5395 1043 187 30 10 chrX 90529056 90529254 -86444886 + MSTB LTR MaLR 225 426 0 732 238 0 0 chrX 90529254 90529422 -86444718 + L1MC/D LINE L1 4518 4685 -1461 2211 111 18 9 chrX 90529422 90529755 -86444385 - L1PA13 LINE L1 -3 6160 5825 31 0 0 0 chrX 90529755 90529786 -86444354 + AT_rich Low_complexity Low_complexity 1 31 0 7071 55 30 0 chrX 90529786 90530746 -86443394 - L1PA8 LINE L1 -7 6165 5200 3628 146 16 3 chrX 90530746 90531766 -86442374 - L1PA13 LINE L1 -324 5837 4810 2535 207 29 4 chrX 90531766 90531881 -86442259 + L1PA13 LINE L1 4679 4790 -1383 2340 71 10 19 chrX 90531881 90532190 -86441950 + AluSg SINE Alu 1 306 -4 2535 207 29 4 chrX 90532190 90532813 -86441327 + L1MC/D LINE L1 4790 5430 -743 21114 166 21 19 chrX 90532814 90533867 -86440273 + L1M1 LINE L1 27 1077 -6488 2423 84 0 3 chrX 90533867 90534177 -86439963 + AluY SINE Alu 1 309 -2 21114 166 21 19 chrX 90534177 90535077 -86439063 + L1M1 LINE L1 1077 1974 -5591 2371 103 3 0 chrX 90535077 90535389 -86438751 - AluSp SINE Alu 0 313 1 21114 166 21 19 chrX 90535389 90538510 -86435630 + L1M1 LINE L1 1974 5088 -2477 2299 96 3 37 chrX 90538510 90538834 -86435306 + AluSp SINE Alu 1 313 0 21114 166 21 19 chrX 90538834 90539110 -86435030 + L1M1 LINE L1 5088 5362 -2203 2161 121 7 0 chrX 90539110 90539400 -86434740 + AluSc SINE Alu 1 292 -17 21114 166 21 19 chrX 90539400 90540490 -86433650 + L1M1 LINE L1 5362 6470 -1095 38595 39 28 2 chrX 90540517 90545196 -86428944 + L1P LINE L1 1 4801 -1345 33 0 0 0 chrX 90646042 90646075 -86328065 + GC_rich Low_complexity Low_complexity 1 33 0 369 0 0 0 chrX 90646178 90646219 -86327921 + (GA)n Simple_repeat Simple_repeat 2 42 0 346 258 117 16 chrX 90649495 90649623 -86324517 + MIR3 SINE MIR 65 205 -3 950 311 54 26 chrX 90651005 90651471 -86322669 + L2 LINE L2 2425 2903 -411 388 182 10 10 chrX 90651471 90651570 -86322570 + CT-rich Low_complexity Low_complexity 2 100 0 2219 85 10 26 chrX 90651581 90651887 -86322253 + AluSx SINE Alu 1 301 -11 343 154 0 0 chrX 90651906 90651958 -86322182 - Alu SINE Alu -248 52 1 869 284 86 54 chrX 90651962 90652214 -86321926 + L2 LINE L2 2893 3164 -149 1779 181 3 3 chrX 90652214 90652524 -86321616 - AluJb SINE Alu -2 310 1 869 284 86 54 chrX 90652524 90652679 -86321461 + L2 LINE L2 3164 3313 0 2031 117 7 29 chrX 90652852 90653159 -86320981 - AluSx SINE Alu -12 300 1 188 345 0 36 chrX 90653370 90653425 -86320715 - L2 LINE L2 -19 3253 3201 264 260 164 0 chrX 90653840 90653913 -86320227 - L2 LINE L2 -1 3312 3228 251 178 44 0 chrX 90653923 90653968 -86320172 - MER5B DNA MER1_type -1 177 131 600 240 7 34 chrX 90654007 90654153 -86319987 - MER5B DNA MER1_type -36 142 1 1659 192 24 0 chrX 90654321 90654608 -86319532 - AluJo SINE Alu -16 296 3 27 39 0 19 chrX 90654894 90654933 -86319207 + AT_rich Low_complexity Low_complexity 1 40 -11 189 0 0 0 chrX 90654933 90654954 -86319186 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 39 0 19 chrX 90654954 90654966 -86319174 + AT_rich Low_complexity Low_complexity 40 51 0 943 124 0 16 chrX 90654967 90655096 -86319044 - FLAM_C SINE Alu -5 128 2 2132 105 0 35 chrX 90655111 90655426 -86318714 - AluY SINE Alu -7 304 1 2278 91 0 7 chrX 90655433 90655730 -86318410 - AluSg1 SINE Alu -14 295 1 2284 101 3 13 chrX 90655761 90656077 -86318063 - AluSp SINE Alu 0 313 1 184 174 152 22 chrX 90656346 90656392 -86317748 - MIR3 SINE MIR -17 191 140 2251 122 3 0 chrX 90656399 90656710 -86317430 - AluSx SINE Alu 0 312 1 306 211 100 11 chrX 90656852 90656942 -86317198 - MIR3 SINE MIR -21 187 90 1689 146 54 27 chrX 90657015 90657310 -86316830 + AluJo SINE Alu 1 303 -9 189 200 0 67 chrX 90657568 90657628 -86316512 - L3 LINE CR1 -1302 275 220 2440 67 3 0 chrX 90657679 90657979 -86316161 + AluY SINE Alu 1 301 -10 1035 186 0 0 chrX 90658019 90658175 -86315965 - FRAM SINE Alu -10 156 1 2039 66 0 0 chrX 90658854 90659095 -86315045 - AluSq SINE Alu -14 299 59 2142 138 3 0 chrX 90659216 90659521 -86314619 + AluJo SINE Alu 1 306 -6 33 25 0 0 chrX 90659574 90659614 -86314526 + AT_rich Low_complexity Low_complexity 1 40 0 243 77 0 26 chrX 90659747 90659786 -86314354 - L1MB7 LINE L1 -13 6171 6134 2393 96 0 0 chrX 90659786 90660089 -86314051 - AluSq SINE Alu -6 307 5 1252 136 0 10 chrX 90660104 90660303 -86313837 - AluSq SINE Alu -12 301 105 253 105 0 26 chrX 90660322 90660360 -86313780 - AluSg/x SINE Alu -136 164 128 832 181 0 0 chrX 90660363 90660490 -86313650 - AluJo/FLAM SINE Alu -174 128 2 1623 176 0 4 chrX 90660517 90660773 -86313367 - AluJb SINE Alu -18 294 40 901 168 7 19 chrX 90660777 90660932 -86313208 - AluJb SINE Alu -159 153 1 642 126 0 29 chrX 90660935 90661038 -86313102 - L1MB7 LINE L1 -67 6117 6018 1964 133 0 7 chrX 90661085 90661378 -86312762 - AluJb SINE Alu -16 296 6 2423 88 3 0 chrX 90661512 90661817 -86312323 - AluSp SINE Alu -7 306 1 191 369 117 24 chrX 90663425 90663715 -86310425 - L2 LINE L2 -404 2910 2594 6007 162 63 23 chrX 90663729 90664188 -86309952 + Charlie1a DNA MER1_type 7 446 -2315 2399 86 0 0 chrX 90664188 90664479 -86309661 + AluSc SINE Alu 1 291 -18 6007 162 63 23 chrX 90664479 90665156 -86308984 + Charlie1a DNA MER1_type 446 1189 -266 471 125 0 0 chrX 90665182 90665246 -86308894 - AluS SINE Alu -243 70 7 272 164 18 0 chrX 90665265 90665320 -86308820 - Alu SINE Alu -6 302 247 209 194 0 0 chrX 90665583 90665619 -86308521 + T-rich Low_complexity Low_complexity 1 36 0 369 0 0 0 chrX 90665719 90665760 -86308380 + (CA)n Simple_repeat Simple_repeat 2 42 0 2044 97 68 4 chrX 90665767 90666046 -86308094 - AluSp SINE Alu -16 297 1 401 308 117 1 chrX 90666177 90666401 -86307739 - L1MEc LINE L1 -4661 1829 1467 2078 108 3 7 chrX 90666411 90666726 -86307414 + AluSx SINE Alu 1 314 0 1813 143 23 46 chrX 90666727 90667078 -86307062 - L1MB8 LINE L1 -9 6169 5827 2251 104 0 3 chrX 90667078 90667375 -86306765 - AluSp SINE Alu -15 298 3 2282 102 0 7 chrX 90667395 90667700 -86306440 - AluSq SINE Alu -10 303 1 560 108 20 49 chrX 90667706 90667808 -86306332 - AluJ/FRAM SINE Alu 0 312 214 286 125 21 0 chrX 90667813 90667861 -86306279 + Alu SINE Alu 252 300 -2 1122 198 0 0 chrX 90667913 90668100 -86306040 - AluJo SINE Alu -125 187 1 2087 154 6 6 chrX 90668101 90668465 -86305675 - L1MB4 LINE L1 -35 6145 5782 1319 191 103 58 chrX 90668466 90668646 -86305494 - MER2 DNA MER2_type 0 345 175 1223 103 175 0 chrX 90668646 90668840 -86305300 - MER30 DNA MER1_type 0 230 3 1319 191 103 58 chrX 90668840 90668988 -86305152 - MER2 DNA MER2_type -170 175 2 2890 175 13 14 chrX 90668988 90669546 -86304594 - L1MB4 LINE L1 -397 5783 5230 277 273 58 124 chrX 90669554 90669644 -86304496 - L1MEc LINE L1 -5538 834 740 2200 84 28 7 chrX 90669644 90669931 -86304209 - AluSp SINE Alu -20 293 1 277 273 58 124 chrX 90669931 90670170 -86303970 - L1MEc LINE L1 -5632 740 527 384 320 70 54 chrX 90670442 90670773 -86303367 - L2 LINE L2 -2554 760 425 386 77 62 46 chrX 90670994 90671059 -86303081 - MADE1 DNA Mariner -14 66 1 2329 97 3 0 chrX 90671335 90671634 -86302506 + AluSp SINE Alu 1 300 -13 1043 181 121 0 chrX 90671849 90672048 -86302092 - MER58A DNA MER1_type -1 223 1 300 182 68 23 chrX 90672167 90672255 -86301885 + L1ME LINE L1 5766 5857 -264 849 143 0 0 chrX 90672309 90672428 -86301712 + FLAM_C SINE Alu 1 119 -24 386 322 177 31 chrX 90673254 90673313 -86300827 - L2 LINE L2 -33 3239 3190 2309 87 3 3 chrX 90673313 90673612 -86300528 - AluSx SINE Alu -13 299 1 386 322 177 31 chrX 90673612 90673722 -86300418 - L2 LINE L2 -82 3190 3097 2236 92 10 10 chrX 90673722 90674025 -86300115 - AluSq SINE Alu -10 303 1 386 322 177 31 chrX 90674025 90674205 -86299935 - L2 LINE L2 -175 3097 2838 2296 96 0 7 chrX 90674239 90674541 -86299599 - AluSx SINE Alu -12 300 1 303 216 0 52 chrX 90674815 90674912 -86299228 - HAL1 LINE L1 -1455 1052 961 2094 82 37 0 chrX 90675034 90675334 -86298806 + AluSg SINE Alu 3 312 0 290 268 74 53 chrX 90675933 90676021 -86298119 - HAL1 LINE L1 -1554 953 868 2023 125 0 10 chrX 90676021 90676316 -86297824 - AluJo SINE Alu -12 300 9 290 268 74 53 chrX 90676316 90676417 -86297723 - HAL1 LINE L1 -1639 868 760 414 0 0 0 chrX 90676527 90676573 -86297567 + (TG)n Simple_repeat Simple_repeat 2 47 0 1434 192 70 67 chrX 90676581 90676982 -86297158 - MLT2C2 LTR ERVL -59 405 4 2807 96 11 16 chrX 90676982 90677359 -86296781 + THE1C LTR MaLR 1 375 0 1098 246 134 50 chrX 90677431 90677822 -86296318 - HAL1 LINE L1 -1982 525 84 2167 138 0 3 chrX 90677822 90678134 -86296006 - AluSx SINE Alu -1 311 1 1098 246 134 50 chrX 90678134 90678226 -86295914 - HAL1 LINE L1 -2423 84 1 1447 161 73 47 chrX 90680155 90680352 -86293788 - AluJo SINE Alu 0 318 110 2152 111 0 16 chrX 90680352 90680489 -86293651 + AluSx SINE Alu 1 139 -173 2328 88 7 0 chrX 90680489 90680785 -86293355 + AluSp SINE Alu 1 298 -15 2152 111 0 16 chrX 90680785 90680953 -86293187 + AluSx SINE Alu 139 301 -11 1447 161 73 47 chrX 90680953 90681066 -86293074 - AluJo SINE Alu -208 110 1 21 0 0 0 chrX 90681630 90681651 -86292489 + AT_rich Low_complexity Low_complexity 1 21 0 2135 130 3 0 chrX 90682591 90682891 -86291249 + AluJb SINE Alu 3 303 -9 219 246 0 0 chrX 90683125 90683182 -86290958 - L2 LINE L2 0 3272 3216 322 371 81 5 chrX 90683182 90683392 -86290748 + L2 LINE L2 2980 3205 -67 1693 164 0 66 chrX 90683429 90683747 -86290393 - AluJb SINE Alu -15 297 1 761 274 119 22 chrX 90683779 90684140 -86290000 - L2 LINE L2 -815 2499 2104 22 35 0 0 chrX 90684331 90684360 -86289780 + AT_rich Low_complexity Low_complexity 1 29 0 403 208 75 42 chrX 90685214 90685334 -86288806 - L2 LINE L2 0 3313 3190 189 0 0 0 chrX 90685754 90685775 -86288365 + (T)n Simple_repeat Simple_repeat 1 21 0 367 210 0 12 chrX 90685854 90685935 -86288205 - MER116 DNA Mariner 0 80 1 615 337 95 71 chrX 90685987 90687178 -86286962 - L2 LINE L2 -1135 2179 935 2238 92 35 0 chrX 90687178 90687462 -86286678 + AluSx SINE Alu 1 294 -18 615 337 95 71 chrX 90687462 90687934 -86286206 - L2 LINE L2 -2379 935 476 2234 91 0 7 chrX 90688163 90688459 -86285681 - AluSx SINE Alu -18 294 1 230 250 92 55 chrX 90689318 90689349 -86284791 - L1ME LINE L1 -337 5784 5756 1974 173 0 0 chrX 90689349 90689649 -86284491 - AluJo SINE Alu -12 300 1 230 250 92 55 chrX 90689649 90689781 -86284359 - L1ME LINE L1 -365 5756 5615 465 327 173 22 chrX 90690015 90690373 -86283767 + L3 LINE CR1 1094 1505 -72 2320 110 0 0 chrX 90690416 90690724 -86283416 - AluSq SINE Alu -5 308 1 2123 99 35 0 chrX 90690779 90691062 -86283078 - AluSc SINE Alu -16 293 1 1989 155 0 0 chrX 90691066 90691362 -86282778 - AluJb SINE Alu -16 296 1 1130 53 0 0 chrX 90691392 90691525 -86282615 - AluSq/x SINE Alu -179 133 1 2419 85 0 7 chrX 90691525 90691831 -86282309 - AluSx SINE Alu -8 304 1 244 111 0 0 chrX 90691858 90691894 -86282246 + L1MA3 LINE L1 6270 6305 0 242 274 18 110 chrX 90692022 90692186 -86281954 + L3 LINE CR1 1381 1529 -48 2536 67 0 6 chrX 90692259 90692572 -86281568 - AluY SINE Alu 0 311 1 22 35 0 0 chrX 90693504 90693533 -86280607 + AT_rich Low_complexity Low_complexity 1 29 0 1832 131 21 38 chrX 90693790 90694080 -86280060 - AluSc SINE Alu -24 285 1 1727 175 18 0 chrX 90694182 90694468 -86279672 - AluJo SINE Alu -21 291 1 309 268 39 78 chrX 90694986 90695152 -86278988 + MER20B DNA MER1_type 56 218 -1 2211 96 11 0 chrX 90695243 90695523 -86278617 + AluSx SINE Alu 17 299 -13 2177 97 7 17 chrX 90695976 90696265 -86277875 - AluSx SINE Alu -26 286 1 2270 118 16 0 chrX 90696513 90696819 -86277321 - AluSx SINE Alu -1 311 1 1667 186 14 0 chrX 90696823 90697119 -86277021 - AluJb SINE Alu -12 300 1 618 114 0 0 chrX 90698063 90698142 -86275998 - MADE1 DNA Mariner -1 79 1 2342 73 14 3 chrX 90699183 90699472 -86274668 - AluSq SINE Alu -21 292 1 2250 54 0 0 chrX 90699653 90699913 -86274227 - L1PA8 LINE L1 0 6172 5913 287 387 60 13 chrX 90700709 90700859 -86273281 - L2 LINE L2 -20 3252 3096 560 311 98 52 chrX 90700955 90701283 -86272857 + L3 LINE CR1 461 803 -774 269 341 139 44 chrX 90701308 90701618 -86272522 - L2 LINE L2 -4 3268 2916 1090 249 4 9 chrX 90701618 90701843 -86272297 - MER58A DNA MER1_type 0 224 1 269 341 139 44 chrX 90701843 90701895 -86272245 - L2 LINE L2 -356 2916 2871 278 253 132 109 chrX 90701895 90701938 -86272202 - MER5B DNA MER1_type 0 178 137 2444 95 0 0 chrX 90701938 90702243 -86271897 - AluSx SINE Alu -7 305 1 278 253 132 109 chrX 90702243 90702373 -86271767 - MER5B DNA MER1_type -41 137 1 1647 163 10 33 chrX 90702805 90703106 -86271034 - AluJb SINE Alu -18 294 1 30 45 0 0 chrX 90703108 90703152 -86270988 + AT_rich Low_complexity Low_complexity 1 44 0 298 327 83 30 chrX 90703234 90703360 -86270780 - L1MEd LINE L1 -5235 884 766 180 0 0 0 chrX 90703360 90703380 -86270760 + (TG)n Simple_repeat Simple_repeat 1 20 0 298 327 83 30 chrX 90703380 90703592 -86270548 - L1MEd LINE L1 -5353 766 528 2309 92 0 13 chrX 90703984 90704300 -86269840 + AluSx SINE Alu 1 312 0 6105 187 46 48 chrX 90704311 90704506 -86269634 - L1MB8 LINE L1 -55 6123 5929 2283 72 7 7 chrX 90704506 90704799 -86269341 - AluSg SINE Alu -17 293 1 6105 187 46 48 chrX 90704799 90704853 -86269287 - L1MB8 LINE L1 -249 5929 5876 1841 99 78 18 chrX 90704853 90705136 -86269004 - AluSx SINE Alu -10 302 3 6105 187 46 48 chrX 90705136 90705719 -86268421 - L1MB8 LINE L1 -302 5876 5293 1548 178 49 23 chrX 90705719 90706023 -86268117 - AluJb SINE Alu 0 312 1 6105 187 46 48 chrX 90706023 90706722 -86267418 - L1MB8 LINE L1 -885 5293 4594 2112 119 0 41 chrX 90706722 90707040 -86267100 + AluSx SINE Alu 1 305 -7 6105 187 46 48 chrX 90707040 90707639 -86266501 - L1MB8 LINE L1 -1584 4594 3962 2258 98 7 0 chrX 90707639 90707926 -86266214 - AluSq SINE Alu -24 289 1 6105 187 46 48 chrX 90707926 90708126 -86266014 - L1MB8 LINE L1 -2216 3962 3763 2210 108 10 0 chrX 90708446 90708743 -86265397 - AluSq SINE Alu -10 303 4 240 35 0 0 chrX 90708905 90708934 -86265206 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5311 79 6 6 chrX 90708944 90709628 -86264512 - L1PB1 LINE L1 -3 6148 5465 262 287 53 11 chrX 90709696 90709790 -86264350 - MIR SINE MIR -92 170 73 1775 188 0 7 chrX 90709802 90710106 -86264034 + AluJo SINE Alu 1 302 -10 3160 141 16 4 chrX 90710140 90710650 -86263490 - L1MA4 LINE L1 -40 6260 5745 348 203 0 0 chrX 90710650 90710709 -86263431 - L1P LINE L1 -1533 4613 4555 2376 99 3 0 chrX 90710709 90711013 -86263127 - AluSq SINE Alu -8 305 1 931 270 35 93 chrX 90711021 90711069 -86263071 - L2 LINE L2 -575 2739 2690 2143 128 0 0 chrX 90711069 90711367 -86262773 - AluSx SINE Alu -14 298 1 931 270 35 93 chrX 90711367 90711608 -86262532 - L2 LINE L2 -624 2690 2436 2488 48 0 3 chrX 90711608 90711898 -86262242 - AluY SINE Alu -22 289 1 2256 103 0 10 chrX 90711898 90712198 -86261942 - AluSq SINE Alu -16 297 1 931 270 35 93 chrX 90712198 90712454 -86261686 - L2 LINE L2 -876 2438 2224 1752 218 89 20 chrX 90712597 90712809 -86261331 + HsTC2 DNA Tc2 1279 1475 -423 2271 102 6 29 chrX 90712809 90713124 -86261016 - AluSg SINE Alu -2 308 1 1752 218 89 20 chrX 90713124 90713145 -86260995 + HsTC2 DNA Tc2 1475 1493 -405 1066 145 38 0 chrX 90713145 90713331 -86260809 + L1MA6 LINE L1 6108 6300 0 1752 218 89 20 chrX 90713331 90713591 -86260549 + HsTC2 DNA Tc2 1493 1807 -91 816 141 23 23 chrX 90713596 90713724 -86260416 - FLAM_C SINE Alu -14 129 2 208 51 26 26 chrX 90713921 90713960 -86260180 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1658 162 6 48 chrX 90714296 90714371 -86259769 + AluJo SINE Alu 1 78 -234 1986 118 4 0 chrX 90714371 90714674 -86259466 - AluSx SINE Alu 0 306 3 1658 162 6 48 chrX 90714674 90714911 -86259229 + AluJo SINE Alu 78 301 -11 23 0 0 0 chrX 90714911 90714934 -86259206 + AT_rich Low_complexity Low_complexity 1 23 0 230 179 18 0 chrX 90716005 90716061 -86258079 + (TG)n Simple_repeat Simple_repeat 2 58 0 2168 81 50 3 chrX 90716191 90716474 -86257666 + AluSg SINE Alu 2 297 -13 598 193 0 76 chrX 90716664 90716763 -86257377 - L2 LINE L2 0 3313 3227 2112 144 3 0 chrX 90716763 90717068 -86257072 - AluSx SINE Alu -6 306 1 598 193 0 76 chrX 90717068 90717113 -86257027 - L2 LINE L2 -86 3227 3180 930 137 8 0 chrX 90717164 90717321 -86256819 - L1M4 LINE L1 -2202 3944 3785 2073 260 184 13 chrX 90717321 90718282 -86255858 - L2 LINE L2 -230 3083 1957 2347 97 0 10 chrX 90718581 90718890 -86255250 - AluSc SINE Alu -3 306 1 2257 99 14 0 chrX 90719197 90719490 -86254650 - AluSc SINE Alu -12 297 1 21 0 0 0 chrX 90719886 90719907 -86254233 + AT_rich Low_complexity Low_complexity 1 21 0 401 323 95 22 chrX 90720038 90720270 -86253870 + L1MB8 LINE L1 11 259 -6600 500 221 37 104 chrX 90720434 90720597 -86253543 + L1MB8 LINE L1 1066 1217 -5642 2206 90 4 0 chrX 90720720 90720997 -86253143 + AluSx SINE Alu 1 278 -34 261 0 0 0 chrX 90720998 90721027 -86253113 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1420 196 100 10 chrX 90721165 90721740 -86252400 + L1MB8 LINE L1 1217 1956 -4899 629 217 0 29 chrX 90721735 90721772 -86252368 + L1MB8 LINE L1 4547 4584 -2373 * 5972 128 151 10 chrX 90721772 90722850 -86251290 + Tigger3b DNA MER2_type 1 1230 -1 629 217 0 29 chrX 90722850 90722950 -86251190 + L1MB8 LINE L1 4584 4680 -2277 * 3217 203 81 66 chrX 90722947 90723072 -86251068 + L1MB8 LINE L1 5275 5397 -1592 1752 180 14 0 chrX 90723072 90723367 -86250773 - AluJo SINE Alu -13 299 1 3217 203 81 66 chrX 90723367 90723879 -86250261 + L1MB8 LINE L1 5397 5900 -1089 1514 194 42 0 chrX 90723879 90724163 -86249977 - AluJb SINE Alu -16 296 1 3217 203 81 66 chrX 90724163 90725200 -86248940 + L1MB8 LINE L1 5900 6969 -20 2448 73 3 0 chrX 90725448 90725749 -86248391 - AluSc SINE Alu -7 302 1 1093 118 0 0 chrX 90725751 90725903 -86248237 - FRAM SINE Alu -5 171 20 1030 209 22 7 chrX 90726024 90726301 -86247839 + L1 LINE L1 3278 3558 -2588 3858 135 30 36 chrX 90726306 90727257 -86246883 + L1PA16 LINE L1 5254 6157 -9 2314 87 10 0 chrX 90727262 90727562 -86246578 + AluSp SINE Alu 1 303 -10 23 54 0 0 chrX 90727570 90727607 -86246533 + AT_rich Low_complexity Low_complexity 1 37 0 331 137 21 0 chrX 90727695 90727765 -86246375 - L1 LINE L1 -927 5219 5143 6109 125 62 14 chrX 90728090 90729344 -86244796 - L1MA4A LINE L1 0 6303 4970 * 6835 219 29 21 chrX 90729341 90730801 -86243339 - L1M2 LINE L1 -5377 1472 2 2544 79 0 6 chrX 90730832 90731147 -86242993 - AluSq SINE Alu 0 313 1 4553 165 43 24 chrX 90731445 90731947 -86242193 - L1MB5 LINE L1 -14 6160 5669 2521 62 3 3 chrX 90731947 90732256 -86241884 - AluY SINE Alu -2 309 1 4553 165 43 24 chrX 90732256 90732573 -86241567 - L1MB5 LINE L1 -505 5669 5360 1978 157 0 13 chrX 90732573 90732873 -86241267 - AluJb SINE Alu -16 296 1 4553 165 43 24 chrX 90732873 90733202 -86240938 - L1MB5 LINE L1 -814 5360 4984 1076 201 5 0 chrX 90733204 90733403 -86240737 - AluJo SINE Alu -13 299 100 6315 212 28 33 chrX 90733403 90734386 -86239754 - L1MB5 LINE L1 -1161 4985 3999 1605 161 29 7 chrX 90734386 90734660 -86239480 - AluJb SINE Alu -3 309 30 6315 212 28 33 chrX 90734660 90734683 -86239457 - L1MB5 LINE L1 -2147 3999 3977 2000 134 51 0 chrX 90734683 90734975 -86239165 - AluSx SINE Alu -5 307 1 6315 212 28 33 chrX 90734975 90735557 -86238583 - L1MB5 LINE L1 -2169 3977 3404 972 80 0 0 chrX 90735557 90735682 -86238458 - AluSg/x SINE Alu -11 301 177 3028 44 3 0 chrX 90735682 90736025 -86238115 - LTR14A LTR ERVK 0 344 1 763 67 8 76 chrX 90736028 90736147 -86237993 - HERVK14 LTR ERVK 0 5945 5835 331 180 0 36 chrX 90736147 90736218 -86237922 - MER41C LTR ERV1 -493 61 6 18364 38 11 3 chrX 90736220 90738371 -86235769 - HERVK14 LTR ERVK -183 5762 3594 1338 117 15 5 chrX 90738371 90738567 -86235573 + AluSg/x SINE Alu 102 299 -10 692 196 15 23 chrX 90738580 90738713 -86235427 + FLAM_C SINE Alu 1 132 -1 2366 96 3 0 chrX 90739681 90739983 -86234157 + AluSx SINE Alu 1 303 -9 203 229 0 0 chrX 90740230 90740265 -86233875 - MIR SINE MIR -8 254 220 1427 182 0 4 chrX 90740785 90741010 -86233130 - MER58A DNA MER1_type 0 224 1 767 290 45 20 chrX 90741132 90741377 -86232763 + MIR SINE MIR 6 256 -6 2345 83 0 10 chrX 90741603 90741916 -86232224 + AluSp SINE Alu 1 310 -3 641 162 29 104 chrX 90742134 90742267 -86231873 + MER3 DNA MER1_type 1 142 -20 1798 159 0 7 chrX 90742267 90742568 -86231572 - AluJo SINE Alu -13 299 1 2339 70 0 13 chrX 90742574 90742888 -86231252 - AluSg SINE Alu 0 310 1 641 162 29 104 chrX 90742888 90742920 -86231220 + MER3 DNA MER1_type 147 160 -49 1754 172 3 7 chrX 90743133 90743441 -86230699 + AluJb SINE Alu 1 307 -5 2154 116 0 0 chrX 90743529 90743830 -86230310 + AluSx SINE Alu 1 301 -11 283 261 80 0 chrX 90744157 90744245 -86229895 - MER3 DNA MER1_type -72 137 43 210 312 43 21 chrX 90744304 90744397 -86229743 - L2 LINE L2 -1000 2314 2220 2093 104 19 10 chrX 90744445 90744754 -86229386 + AluSx SINE Alu 1 312 0 181 260 20 0 chrX 90744911 90744961 -86229179 - L2 LINE L2 0 3313 3263 186 105 132 0 chrX 90745918 90745956 -86228184 + L2 LINE L2 3210 3252 -20 219 268 0 98 chrX 90746123 90746205 -86227935 - L2 LINE L2 -3 3269 3196 1469 163 26 72 chrX 90746328 90746502 -86227638 - AluJo SINE Alu -20 292 112 2037 119 3 3 chrX 90746502 90746804 -86227336 + AluSq SINE Alu 1 302 -11 2143 100 0 0 chrX 90746811 90747101 -86227039 + AluSg SINE Alu 5 294 -16 1469 163 26 72 chrX 90747101 90747224 -86226916 - AluJo SINE Alu -206 106 1 227 225 0 0 chrX 90747264 90747304 -86226836 - L2 LINE L2 -365 2907 2868 2245 104 0 0 chrX 90747479 90747786 -86226354 + AluSg SINE Alu 1 307 -3 1962 98 6 76 chrX 90747958 90748093 -86226047 + AluSq SINE Alu 1 144 -169 2148 77 56 0 chrX 90748093 90748379 -86225761 + AluSg SINE Alu 1 302 -8 1962 98 6 76 chrX 90748379 90748558 -86225582 + AluSq SINE Alu 144 293 -20 759 153 16 0 chrX 90748563 90748687 -86225453 + AluJo/FLAM SINE Alu 5 130 -172 2387 80 3 0 chrX 90748690 90749002 -86225138 + AluSp SINE Alu 1 313 0 1976 129 7 0 chrX 90749005 90749134 -86225006 + AluSx SINE Alu 1 128 -184 246 32 0 0 chrX 90749134 90749165 -86224975 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1976 129 7 0 chrX 90749165 90749321 -86224819 + AluSx SINE Alu 128 288 -24 45 34 0 0 chrX 90749321 90749380 -86224760 + AT_rich Low_complexity Low_complexity 1 59 0 2258 90 3 0 chrX 90749382 90749683 -86224457 + AluSx SINE Alu 1 302 -10 584 263 45 50 chrX 90749962 90750160 -86223980 + MIR SINE MIR 18 214 -48 2211 75 3 20 chrX 90750163 90750458 -86223682 + AluSp SINE Alu 2 291 -22 1611 134 90 7 chrX 90750465 90750742 -86223398 + AluJo SINE Alu 1 300 -12 2012 107 17 0 chrX 90751067 90751356 -86222784 + AluSx SINE Alu 1 294 -18 831 128 0 0 chrX 90751357 90751474 -86222666 - AluJo/FLAM SINE Alu -195 117 1 384 22 0 0 chrX 90751625 90751670 -86222470 + (CA)n Simple_repeat Simple_repeat 2 46 0 1703 142 4 4 chrX 90751982 90752257 -86221883 - AluSx SINE Alu -37 275 1 552 317 25 35 chrX 90752265 90752467 -86221673 + MIR SINE MIR 52 251 -11 1840 139 26 7 chrX 90752728 90753030 -86221110 + AluJo SINE Alu 1 308 -4 1948 101 38 3 chrX 90753030 90753317 -86220823 + AluSx SINE Alu 1 298 -14 2317 87 3 0 chrX 90753960 90754271 -86219869 + AluSp SINE Alu 1 312 -1 2230 87 0 0 chrX 90754279 90754579 -86219561 + AluSg SINE Alu 1 300 -10 2189 96 0 0 chrX 90756230 90756521 -86217619 + AluSq SINE Alu 5 295 -18 251 211 56 100 chrX 90756603 90756693 -86217447 - L2 LINE L2 -1 3312 3227 732 184 94 85 chrX 90756729 90756766 -86217374 + MIR SINE MIR 37 72 -190 2288 92 0 0 chrX 90756766 90757069 -86217071 - AluSp SINE Alu -9 304 2 732 184 94 85 chrX 90757069 90757254 -86216886 + MIR SINE MIR 72 261 -1 1990 189 136 24 chrX 90757293 90757645 -86216495 + LTR49 LTR ERV1 1 312 -283 2295 66 0 10 chrX 90757645 90757948 -86216192 - AluY SINE Alu -11 300 1 2290 48 14 3 chrX 90757948 90758236 -86215904 - AluSc SINE Alu -17 292 1 1990 189 136 24 chrX 90758236 90758417 -86215723 + LTR49 LTR ERV1 311 595 0 399 21 0 0 chrX 90758417 90758465 -86215675 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chrX 90758839 90758867 -86215273 + AT_rich Low_complexity Low_complexity 1 28 0 511 111 0 0 chrX 90759377 90759449 -86214691 + LTR19A LTR ERV1 3 74 -412 1453 94 5 5 chrX 90759449 90759650 -86214490 + AluSx SINE Alu 1 201 -111 2239 109 0 3 chrX 90759679 90759990 -86214150 - AluSq SINE Alu -3 310 1 700 158 0 0 chrX 90759991 90760111 -86214029 + AluSp/q SINE Alu 192 311 -2 2008 127 10 4 chrX 90760113 90760493 -86213647 + LTR19A LTR ERV1 62 486 0 1267 177 6 114 chrX 90761050 90761137 -86213003 - LTR8A LTR ERV1 0 727 632 2214 107 0 0 chrX 90761137 90761436 -86212704 + AluSx SINE Alu 1 299 -13 1267 177 6 114 chrX 90761436 90761681 -86212459 - LTR8A LTR ERV1 -95 632 431 300 258 32 11 chrX 90761696 90761789 -86212351 - MER5A DNA MER1_type -88 101 7 3668 144 79 20 chrX 90761883 90762570 -86211570 + LTR8A LTR ERV1 1 727 0 1882 100 0 19 chrX 90762697 90762968 -86211172 + AluSq SINE Alu 1 266 -47 545 275 81 62 chrX 90763201 90763412 -86210728 + L1ME LINE L1 5270 5493 -628 1644 146 13 23 chrX 90763412 90763713 -86210427 + AluJb SINE Alu 2 299 -13 545 275 81 62 chrX 90763713 90763886 -86210254 + L1ME LINE L1 5493 5661 -460 1781 155 7 19 chrX 90763894 90764203 -86209937 + AluSx SINE Alu 1 305 -7 2104 92 3 0 chrX 90764206 90764529 -86209611 + AluSp SINE Alu 3 326 0 219 36 0 0 chrX 90764696 90764724 -86209416 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2077 91 0 0 chrX 90764729 90765004 -86209136 - AluSq SINE Alu -38 275 1 249 59 0 0 chrX 90766108 90766142 -86207998 - HY3 scRNA scRNA -2 99 66 1631 163 0 42 chrX 90766151 90766312 -86207828 - AluJb SINE Alu -18 294 151 2121 114 0 3 chrX 90766312 90766610 -86207530 - AluSx SINE Alu -15 297 1 1631 163 0 42 chrX 90766610 90766755 -86207385 - AluJb SINE Alu -161 151 1 2524 95 102 38 chrX 90766763 90766904 -86207236 - L1PA15 LINE L1 -3 6162 6032 2142 121 0 6 chrX 90766904 90767218 -86206922 - AluSx SINE Alu 0 312 1 2524 95 102 38 chrX 90767218 90767496 -86206644 - L1PA15 LINE L1 -133 6032 5716 2041 108 34 0 chrX 90767541 90767836 -86206304 + AluSp SINE Alu 1 305 -8 1948 140 3 0 chrX 90767904 90768197 -86205943 - AluSx SINE Alu -18 294 1 652 304 61 9 chrX 90768289 90768503 -86205637 - MIR SINE MIR -3 259 35 2326 83 0 0 chrX 90768514 90768815 -86205325 - AluSg SINE Alu -9 301 1 1044 157 67 6 chrX 90768849 90769027 -86205113 - MER5A DNA MER1_type 0 189 1 427 246 36 90 chrX 90769733 90769760 -86204380 + MER5B DNA MER1_type 17 44 -134 2330 77 0 13 chrX 90769760 90770071 -86204069 - AluSq SINE Alu -5 308 2 427 246 36 90 chrX 90770071 90770210 -86203930 + MER5B DNA MER1_type 44 174 -4 2863 44 0 0 chrX 90770233 90770573 -86203567 + L1PA6 LINE L1 5810 6149 -5 617 271 9 72 chrX 90770593 90770814 -86203326 + MIR SINE MIR 51 257 -5 2172 120 0 0 chrX 90770835 90771136 -86203004 + AluSx SINE Alu 1 301 -11 2330 74 3 3 chrX 90771324 90771634 -86202506 + AluSp SINE Alu 1 310 -3 2172 109 0 0 chrX 90772144 90772447 -86201693 + AluSx SINE Alu 1 303 -9 303 77 0 0 chrX 90772453 90772492 -86201648 - U2 snRNA snRNA -149 39 1 893 94 0 58 chrX 90772678 90772816 -86201324 + AluJb SINE Alu 5 134 -178 369 325 153 0 chrX 90772816 90772979 -86201161 + MIR SINE MIR 60 247 -15 2130 99 0 39 chrX 90772979 90773291 -86200849 - AluSx SINE Alu -12 300 1 1973 252 78 2 chrX 90773400 90773873 -86200267 + Zaphod DNA AcHobo 1 509 -3522 283 294 0 0 chrX 90773875 90773943 -86200197 + MER115 DNA AcHobo 626 693 0 394 351 89 15 chrX 90773943 90774214 -86199926 + L1M4 LINE L1 4133 4423 -1723 1151 155 14 23 chrX 90774219 90774438 -86199702 - AluJo SINE Alu -95 217 1 24705 53 21 37 chrX 90774482 90774530 -86199610 + HUERS-P1 LTR ERV1 2913 2960 -3303 447 19 0 0 chrX 90774530 90774582 -86199558 + (TG)n Simple_repeat Simple_repeat 1 52 0 24705 53 21 37 chrX 90774582 90774609 -86199531 + HUERS-P1 LTR ERV1 2960 2986 -3277 2054 95 7 7 chrX 90774609 90774948 -86199192 + AluSq SINE Alu 2 340 0 24705 53 21 37 chrX 90774948 90775501 -86198639 + HUERS-P1 LTR ERV1 2986 3546 -2717 2290 82 0 7 chrX 90775501 90775805 -86198335 - AluSc SINE Alu -7 302 1 24705 53 21 37 chrX 90775805 90776393 -86197747 + HUERS-P1 LTR ERV1 3546 4142 -2121 2260 89 0 3 chrX 90776393 90776697 -86197443 - AluSx SINE Alu -9 303 1 24705 53 21 37 chrX 90776697 90776815 -86197325 + HUERS-P1 LTR ERV1 4142 4260 -2003 2382 70 13 0 chrX 90776815 90777116 -86197024 + AluSp SINE Alu 1 305 -8 24705 53 21 37 chrX 90777116 90777356 -86196784 + HUERS-P1 LTR ERV1 4260 4502 -1761 2391 91 0 0 chrX 90777356 90777665 -86196475 - AluSc SINE Alu 0 309 1 24705 53 21 37 chrX 90777665 90779490 -86194650 + HUERS-P1 LTR ERV1 4502 6263 0 5490 66 6 17 chrX 90779490 90780026 -86194114 + LTR8 LTR ERV1 1 529 -162 2192 115 0 6 chrX 90780026 90780340 -86193800 + AluSx SINE Alu 1 312 0 5490 66 6 17 chrX 90780340 90780502 -86193638 + LTR8 LTR ERV1 529 691 0 808 102 0 0 chrX 90780502 90780610 -86193530 - AluSq/x SINE Alu -204 108 1 265 243 6 48 chrX 90780613 90780748 -86193392 + L1MC/D LINE L1 5700 5827 -294 1052 172 0 78 chrX 90780750 90780994 -86193146 + AluJo SINE Alu 1 225 -87 1162 177 5 0 chrX 90781039 90781242 -86192898 + AluJo SINE Alu 1 204 -108 868 269 65 0 chrX 90781352 90781597 -86192543 + MIR SINE MIR 2 262 0 181 174 43 116 chrX 90781608 90781677 -86192463 - L2 LINE L2 -190 3082 3019 186 43 0 0 chrX 90783264 90783287 -86190853 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 188 227 23 0 chrX 90784916 90784960 -86189180 + L2 LINE L2 3262 3306 -7 319 281 39 67 chrX 90785265 90785443 -86188697 - MIR SINE MIR -62 200 28 329 282 73 68 chrX 90785526 90785732 -86188408 - L1 LINE L1 -2873 3273 3067 275 220 51 0 chrX 90785876 90785935 -86188205 + MIR SINE MIR 109 170 -92 281 301 65 0 chrX 90785972 90786065 -86188075 + MIR SINE MIR 154 252 -10 2108 112 0 0 chrX 90786166 90786462 -86187678 - AluSq SINE Alu -17 296 1 292 199 55 57 chrX 90787118 90787269 -86186871 - MIR SINE MIR -36 226 80 1778 87 4 0 chrX 90787491 90787733 -86186407 + AluSp SINE Alu 68 310 -3 1134 139 31 125 chrX 90787986 90788101 -86186039 - L1ME3A LINE L1 -9 6161 6037 2115 126 0 0 chrX 90788101 90788410 -86185730 + AluSx SINE Alu 2 310 -2 1134 139 31 125 chrX 90788410 90788581 -86185559 - L1ME3A LINE L1 -133 6037 5902 2069 125 0 6 chrX 90788836 90789149 -86184991 + AluSx SINE Alu 1 311 -1 2253 82 0 32 chrX 90789164 90789479 -86184661 + AluSc SINE Alu 1 305 -4 2024 141 0 0 chrX 90789639 90789938 -86184202 - AluSx SINE Alu -13 299 1 204 315 130 22 chrX 90790052 90790144 -86183996 - MIR SINE MIR -77 131 30 2241 95 3 0 chrX 90790467 90790773 -86183367 - AluSp SINE Alu -6 307 1 1656 114 0 30 chrX 90791294 90791558 -86182582 + AluSg SINE Alu 54 309 -1 1263 128 0 0 chrX 90791558 90791745 -86182395 + AluSg/x SINE Alu 126 312 0 1735 110 7 18 chrX 90791854 90792127 -86182013 + AluJb SINE Alu 8 277 -35 1821 133 25 0 chrX 90792141 90792427 -86181713 + AluSx SINE Alu 1 293 -19 397 193 7 17 chrX 90792858 90792993 -86181147 - MER96B DNA MER1_type? -238 179 5 870 186 0 50 chrX 90793071 90793291 -86180849 + AluJo SINE Alu 93 301 -11 268 203 27 81 chrX 90793292 90793366 -86180774 - MIR SINE MIR -181 81 12 631 314 158 57 chrX 90793525 90793675 -86180465 + L2 LINE L2 1940 2073 -1240 1866 113 32 48 chrX 90793675 90793985 -86180155 - AluSx SINE Alu -7 305 1 631 314 158 57 chrX 90793985 90794354 -86179786 + L2 LINE L2 2073 2403 -910 2260 82 0 13 chrX 90794354 90794658 -86179482 - AluSx SINE Alu -12 300 1 631 314 158 57 chrX 90794658 90794820 -86179320 + L2 LINE L2 2403 2547 -766 1881 139 3 10 chrX 90794820 90795122 -86179018 - AluJo SINE Alu -12 300 1 631 314 158 57 chrX 90795122 90795683 -86178457 + L2 LINE L2 2547 3297 -16 180 152 0 0 chrX 90795713 90795746 -86178394 + A-rich Low_complexity Low_complexity 1 33 0 249 242 202 24 chrX 90795958 90796082 -86178058 + L2 LINE L2 3163 3308 -5 1923 94 31 35 chrX 90796095 90796415 -86177725 + AluSx SINE Alu 1 319 0 2197 84 0 0 chrX 90796804 90797131 -86177009 - AluSx SINE Alu 0 327 1 2243 143 8 8 chrX 90797221 90797586 -86176554 - MLT1A1 LTR MaLR 0 365 1 2024 113 10 0 chrX 90797641 90797932 -86176208 - AluSx SINE Alu -18 294 1 216 0 0 0 chrX 90798805 90798829 -86175311 + (TG)n Simple_repeat Simple_repeat 1 24 0 202 216 0 0 chrX 90798829 90798866 -86175274 + (CACG)n Simple_repeat Simple_repeat 3 39 0 1939 149 3 0 chrX 90800037 90800345 -86173795 - AluJb SINE Alu -3 309 1 1589 181 29 76 chrX 90801155 90801312 -86172828 + MLT1B LTR MaLR 1 164 -226 2200 94 0 0 chrX 90801312 90801609 -86172531 - AluSx SINE Alu -10 302 6 1589 181 29 76 chrX 90801609 90801860 -86172280 + MLT1B LTR MaLR 164 390 0 1477 161 63 18 chrX 90801880 90802008 -86172132 + AluJb SINE Alu 1 122 -190 1988 118 13 3 chrX 90802008 90802314 -86171826 + AluSx SINE Alu 1 309 -3 1477 161 63 18 chrX 90802314 90802471 -86171669 + AluJb SINE Alu 122 299 -13 1869 141 37 0 chrX 90803145 90803444 -86170696 + AluSx SINE Alu 3 312 0 482 185 0 30 chrX 90803444 90803579 -86170561 + GA-rich Low_complexity Low_complexity 2 132 0 1997 122 3 13 chrX 90803657 90803960 -86170180 + AluSx SINE Alu 1 300 -12 2998 200 101 146 chrX 90804256 90804695 -86169445 + L2 LINE L2 1579 2036 -1277 2124 83 0 40 chrX 90804695 90804997 -86169143 - AluSc SINE Alu -8 301 12 2998 200 101 146 chrX 90804997 90805400 -86168740 + L2 LINE L2 2036 2456 -857 566 184 54 54 chrX 90805400 90805568 -86168572 - L1MA10 LINE L1 0 6334 6167 2998 200 101 146 chrX 90805568 90805579 -86168561 + L2 LINE L2 2456 2466 -847 2312 92 0 0 chrX 90805579 90805885 -86168255 - AluSq SINE Alu -7 306 1 2998 200 101 146 chrX 90805885 90806169 -86167971 + L2 LINE L2 2466 2805 -508 1577 175 82 25 chrX 90806169 90806524 -86167616 + THE1C LTR MaLR 1 375 0 2998 200 101 146 chrX 90806524 90806733 -86167407 + L2 LINE L2 2805 3022 -291 512 184 0 0 chrX 90806733 90806820 -86167320 - MER20 DNA MER1_type 0 219 133 234 0 0 0 chrX 90806890 90806916 -86167224 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 656 254 53 35 chrX 90806927 90807155 -86166985 + L2 LINE L2 3082 3313 0 1162 264 108 75 chrX 90807157 90807444 -86166696 + HAL1 LINE L1 110 386 -2121 1929 133 0 14 chrX 90807444 90807749 -86166391 + AluSx SINE Alu 1 301 0 1162 264 108 75 chrX 90807749 90807918 -86166222 + HAL1 LINE L1 386 548 -1959 2040 107 10 0 chrX 90807918 90808207 -86165933 - AluSg SINE Alu -13 297 6 1162 264 108 75 chrX 90808207 90808443 -86165697 + HAL1 LINE L1 548 775 -1732 1696 167 0 10 chrX 90808443 90808736 -86165404 - AluJo SINE Alu -17 295 6 1162 264 108 75 chrX 90808736 90808892 -86165248 + HAL1 LINE L1 775 924 -1583 2114 135 0 0 chrX 90808892 90809204 -86164936 + AluSq SINE Alu 1 312 -1 1162 264 108 75 chrX 90809204 90809478 -86164662 + HAL1 LINE L1 924 1274 -1233 1853 122 4 0 chrX 90809490 90809760 -86164380 + AluSx SINE Alu 21 291 -21 2243 103 0 0 chrX 90809772 90810082 -86164058 + AluY SINE Alu 1 310 -1 1322 87 0 0 chrX 90810088 90810261 -86163879 + AluSq SINE Alu 129 301 -12 455 227 98 110 chrX 90810275 90810440 -86163700 + HAL1 LINE L1 1815 1980 -527 2226 110 0 0 chrX 90810440 90810750 -86163390 + AluSq SINE Alu 1 310 -3 455 227 98 110 chrX 90810750 90810779 -86163361 + HAL1 LINE L1 1980 2008 -499 2127 113 0 3 chrX 90810779 90811090 -86163050 + AluSx SINE Alu 1 310 -2 455 227 98 110 chrX 90811090 90811158 -86162982 + HAL1 LINE L1 2008 2075 -432 346 232 192 36 chrX 90811207 90811305 -86162835 + L1MC4a LINE L1 5863 5944 -1864 2349 86 3 0 chrX 90811305 90811608 -86162532 - AluSp SINE Alu -9 304 1 2133 118 0 0 chrX 90811612 90811908 -86162232 - AluSx SINE Alu -16 296 1 346 232 192 36 chrX 90811908 90812054 -86162086 + L1MC4a LINE L1 5946 6151 -1657 23 54 0 0 chrX 90812054 90812091 -86162049 + AT_rich Low_complexity Low_complexity 1 37 0 1131 114 0 0 chrX 90812216 90812374 -86161766 + AluSx SINE Alu 1 158 -154 1262 125 108 35 chrX 90912374 90912606 -86061534 + L1MA7 LINE L1 5620 5868 -423 291 54 0 0 chrX 90912623 90912660 -86061480 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 2323 108 0 13 chrX 90912857 90913173 -86060967 + AluSx SINE Alu 1 312 0 1940 155 14 7 chrX 90914460 90914756 -86059384 + AluJb SINE Alu 1 298 -14 2461 83 0 0 chrX 90915336 90915636 -86058504 + AluSx SINE Alu 1 300 -12 366 219 9 57 chrX 90915897 90916002 -86058138 - L2 LINE L2 0 3313 3214 5676 176 68 32 chrX 90916208 90917862 -86056278 - L1MD2 LINE L1 0 6359 4669 2206 102 0 0 chrX 90917871 90918182 -86055958 - AluY SINE Alu 0 311 1 475 315 20 0 chrX 90918192 90918341 -86055799 - L2 LINE L2 -609 2705 2554 1775 139 40 0 chrX 90918416 90918690 -86055450 + AluJb SINE Alu 1 285 -27 2353 157 26 29 chrX 90918710 90918925 -86055215 - L1MB8 LINE L1 -39 6139 5925 480 291 99 34 chrX 90918925 90919217 -86054923 - L1MC4a LINE L1 -1880 5928 5618 3391 154 77 0 chrX 90919648 90919871 -86054269 + MER7C DNA MER2_type 1 205 -2823 191 88 29 0 chrX 90919871 90919905 -86054235 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 3391 154 77 0 chrX 90919905 90920239 -86053901 + MER7C DNA MER2_type 205 601 -1 257 378 61 0 chrX 90920410 90920590 -86053550 - L2 LINE L2 -160 3112 2922 225 299 124 11 chrX 90920742 90920919 -86053221 - L2 LINE L2 -788 2526 2330 2319 84 78 29 chrX 90921678 90922025 -86052115 + THE1B LTR MaLR 1 364 0 766 165 0 0 chrX 90922554 90922669 -86051471 - FLAM_A SINE Alu -14 119 5 1818 184 40 6 chrX 90923321 90923674 -86050466 - MLT1A1 LTR MaLR 0 365 1 2317 101 0 0 chrX 90923957 90924254 -86049886 - AluSx SINE Alu -15 297 1 644 154 39 0 chrX 90925216 90925320 -86048820 + MER33 DNA MER1_type 2 109 -215 1877 242 45 23 chrX 90925320 90925810 -86048330 + REP3 LTR ERV 1 505 -57 288 0 0 0 chrX 90925810 90925842 -86048298 + (TG)n Simple_repeat Simple_repeat 2 33 0 1877 242 45 23 chrX 90925842 90925880 -86048260 + REP3 LTR ERV 505 541 -21 827 122 128 10 chrX 90925876 90926072 -86048068 + MER33 DNA MER1_type 106 324 0 * 942 121 0 0 chrX 90926084 90926216 -86047924 + AluSg/x SINE Alu 176 307 -5 386 167 17 17 chrX 90926248 90926368 -86047772 + (TA)n Simple_repeat Simple_repeat 2 121 0 221 0 0 33 chrX 90926378 90926408 -86047732 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 419 162 8 26 chrX 90926441 90926558 -86047582 + (TA)n Simple_repeat Simple_repeat 2 116 0 237 33 0 0 chrX 90926558 90926588 -86047552 + (TG)n Simple_repeat Simple_repeat 2 31 0 199 277 0 0 chrX 90931108 90931155 -86042985 + L2 LINE L2 3255 3301 -12 2321 75 4 0 chrX 90931693 90931974 -86042166 + AluSp SINE Alu 1 282 -31 237 33 0 0 chrX 90931978 90932008 -86042132 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 829 258 22 9 chrX 90932221 90932450 -86041690 - MIR SINE MIR 0 262 31 219 69 0 0 chrX 90933294 90933323 -86040817 + (CCCCCA)n Simple_repeat Simple_repeat 1 29 0 221 275 101 0 chrX 90933796 90933865 -86040275 - MER5C DNA MER1_type 0 324 249 460 201 0 75 chrX 90934000 90934134 -86040006 - MER5C DNA MER1_type -200 124 1 445 218 179 19 chrX 90934150 90934306 -86039834 + MER5A DNA MER1_type 9 189 0 2271 98 0 33 chrX 90934632 90934938 -86039202 + AluSx SINE Alu 1 296 -16 913 252 0 17 chrX 90934962 90935200 -86038940 - MIR SINE MIR -1 261 28 860 137 0 8 chrX 90937367 90937491 -86036649 - FLAM_C SINE Alu -20 123 1 1073 93 14 0 chrX 90937810 90937950 -86036190 + AluSg/x SINE Alu 164 305 -5 26 50 0 0 chrX 90937958 90937998 -86036142 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chrX 90938482 90938505 -86035635 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 217 273 13 52 chrX 90939431 90939508 -86034632 + MIR3 SINE MIR 15 88 -120 2097 183 50 10 chrX 90939718 90940134 -86034006 - MER63B DNA MER1_type -2 434 2 245 241 0 0 chrX 90940841 90940895 -86033245 + CT-rich Low_complexity Low_complexity 1 54 0 261 183 0 0 chrX 90941295 90941355 -86032785 + GA-rich Low_complexity Low_complexity 2 61 0 324 328 9 10 chrX 90941772 90941896 -86032244 + MIR SINE MIR 19 141 -67 851 143 0 0 chrX 90941896 90942015 -86032125 - FLAM_C SINE Alu -14 119 1 185 305 51 0 chrX 90942240 90942299 -86031841 + L2 LINE L2 3125 3186 -86 565 304 63 10 chrX 90944430 90944637 -86029503 + L1ME3A LINE L1 5410 5627 -535 355 207 129 43 chrX 90944655 90944771 -86029369 + MER112 DNA MER1_type 1 126 -134 613 285 77 23 chrX 90944918 90945139 -86029001 + L1ME3A LINE L1 5644 5876 -294 2966 175 8 20 chrX 90945388 90945989 -86028151 - L1MA10 LINE L1 -1 6333 5740 293 278 14 0 chrX 90947116 90947188 -86026952 - MIR SINE MIR -4 258 186 1461 255 119 18 chrX 90947201 90947905 -86026235 + L2 LINE L2 2554 3312 -1 501 295 19 81 chrX 90947900 90948074 -86026066 - MIR SINE MIR -65 197 37 * 1972 77 110 0 chrX 90948074 90948346 -86025794 - AluSq SINE Alu -11 302 1 501 295 19 81 chrX 90948346 90948381 -86025759 - MIR SINE MIR -225 37 1 230 229 98 59 chrX 90949542 90949695 -86024445 - MLT1G LTR MaLR -242 348 190 227 255 0 0 chrX 90949906 90949953 -86024187 + (TG)n Simple_repeat Simple_repeat 2 48 0 1510 167 7 47 chrX 90950010 90950309 -86023831 - L1MD2 LINE L1 0 6359 6073 1698 160 3 38 chrX 90950956 90951275 -86022865 + AluJb SINE Alu 1 308 -4 1765 154 0 23 chrX 90951438 90951614 -86022526 - AluJo SINE Alu -20 292 124 2327 75 0 0 chrX 90951614 90951908 -86022232 + AluY SINE Alu 1 294 -17 1765 154 0 23 chrX 90951908 90952030 -86022110 - AluJo SINE Alu -188 124 1 29 0 0 0 chrX 90952831 90952860 -86021280 + AT_rich Low_complexity Low_complexity 1 29 0 1123 197 19 89 chrX 90952881 90953206 -86020934 - L1ME3A LINE L1 -76 6094 5793 639 219 86 41 chrX 90953227 90953496 -86020644 - L1ME4a LINE L1 -6 6115 5835 220 273 91 11 chrX 90953600 90953688 -86020452 + L3 LINE CR1 1434 1528 -49 460 291 70 26 chrX 90954575 90954812 -86019328 - MIR SINE MIR 0 262 3 245 298 40 136 chrX 90955135 90955312 -86018828 - MIR SINE MIR -70 192 34 204 154 26 0 chrX 90958905 90958944 -86015196 + CT-rich Low_complexity Low_complexity 4 43 0 438 329 63 31 chrX 90960244 90960466 -86013674 - L2 LINE L2 -173 3099 2871 371 308 169 57 chrX 90960856 90960940 -86013200 - L2 LINE L2 -529 2785 2712 2198 70 0 7 chrX 90960940 90961248 -86012892 - AluSq SINE Alu 0 306 1 371 308 169 57 chrX 90961248 90961600 -86012540 - L2 LINE L2 -602 2712 2298 1538 242 120 54 chrX 90962300 90962574 -86011566 - L1ME4a LINE L1 -2 6119 5864 1716 134 24 14 chrX 90962574 90962864 -86011276 - AluJb SINE Alu -19 293 1 1538 242 120 54 chrX 90962864 90962894 -86011246 - L1ME4a LINE L1 -257 5864 5837 847 248 36 12 chrX 90962894 90963144 -86010996 + MIR SINE MIR 3 258 -4 1538 242 120 54 chrX 90963144 90963614 -86010526 - L1ME4a LINE L1 -284 5837 5293 258 221 147 0 chrX 90963766 90963834 -86010306 + MIR SINE MIR 66 143 -65 213 244 13 77 chrX 90963921 90963999 -86010141 - MIR SINE MIR -76 186 114 2411 134 49 0 chrX 90964275 90964648 -86009492 + MSTC LTR MaLR 42 428 0 517 252 64 30 chrX 90965154 90965388 -86008752 + L1MC4a LINE L1 5658 5899 -1909 1001 268 52 8 chrX 90965873 90966123 -86008017 - MIR SINE MIR 0 262 2 397 227 18 57 chrX 90966486 90966623 -86007517 + L1MC/D LINE L1 5651 5780 -462 560 306 169 5 chrX 90966636 90966855 -86007285 + MIR SINE MIR 6 260 -2 318 26 0 0 chrX 91017096 91017135 -85957005 + (A)n Simple_repeat Simple_repeat 1 39 0 414 165 29 58 chrX 91017454 91017557 -85956583 - MIR3 SINE MIR -1 207 108 1099 257 66 52 chrX 91017658 91018020 -85956120 + L1ME3A LINE L1 5517 5888 -282 1410 179 58 34 chrX 91018020 91018311 -85955829 + AluJo SINE Alu 4 301 -11 1099 257 66 52 chrX 91018311 91018388 -85955752 + L1ME3A LINE L1 5888 5962 -208 186 128 0 0 chrX 91018967 91019006 -85955134 + (T)n Simple_repeat Simple_repeat 1 39 0 636 214 14 7 chrX 91019066 91019211 -85954929 + MER103 DNA DNA 2 147 -19 186 133 0 0 chrX 91019230 91019260 -85954880 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 77 0 0 chrX 91020203 91020229 -85953911 + (CACCC)n Simple_repeat Simple_repeat 2 27 0 339 25 0 0 chrX 91021003 91021043 -85953097 + (CA)n Simple_repeat Simple_repeat 2 41 0 227 259 0 17 chrX 91021296 91021354 -85952786 + CT-rich Low_complexity Low_complexity 5 61 0 251 247 0 12 chrX 91021541 91021626 -85952514 + GA-rich Low_complexity Low_complexity 3 86 0 283 173 0 19 chrX 91022152 91022204 -85951936 + L2 LINE L2 3263 3313 0 2265 90 6 16 chrX 91022468 91022779 -85951361 + AluSg SINE Alu 1 308 -2 1185 174 0 5 chrX 91022946 91023164 -85950976 - L1MA7 LINE L1 -1 6290 6074 357 291 137 63 chrX 91023923 91024194 -85949946 - L2 LINE L2 -343 2971 2681 395 346 84 6 chrX 91024194 91024373 -85949767 - L2 LINE L2 -5 3267 3075 199 343 79 7 chrX 91024354 91024494 -85949646 - L2 LINE L2 -640 2674 2525 * 932 148 0 0 chrX 91025104 91025232 -85948908 + FLAM_C SINE Alu 1 128 -5 248 343 0 14 chrX 91025999 91026072 -85948068 + MIR3 SINE MIR 6 77 -131 2288 113 13 0 chrX 91026546 91026855 -85947285 + AluSq SINE Alu 1 313 0 738 260 43 34 chrX 91026982 91027217 -85946923 - MIR SINE MIR -6 256 20 2313 117 0 0 chrX 91027988 91028296 -85945844 + AluSg SINE Alu 1 308 -2 1656 173 0 11 chrX 91028503 91028775 -85945365 + AluJo SINE Alu 24 292 -20 3047 161 81 11 chrX 91028775 91029334 -85944806 - L1MB7 LINE L1 -154 6030 5433 184 313 0 0 chrX 91030217 91030265 -85943875 - MIR SINE MIR -61 147 100 707 245 185 0 chrX 91030717 91030933 -85943207 + MIR SINE MIR 7 262 0 2411 80 0 22 chrX 91031422 91031734 -85942406 + AluSx SINE Alu 1 305 -7 196 304 63 38 chrX 91031928 91032007 -85942133 - L2 LINE L2 -17 3296 3216 475 338 86 37 chrX 91033000 91033468 -85940672 - L2 LINE L2 -237 3035 2543 897 166 7 7 chrX 91033523 91033674 -85940466 + MLT1B LTR MaLR 240 390 0 2198 126 0 0 chrX 91033995 91034297 -85939843 + AluSx SINE Alu 1 302 -10 1523 162 42 0 chrX 91034307 91034429 -85939711 + AluSq SINE Alu 1 116 -197 279 0 0 0 chrX 91034429 91034460 -85939680 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1523 162 42 0 chrX 91034460 91034578 -85939562 + AluSq SINE Alu 116 251 -62 229 263 0 0 chrX 91034688 91034745 -85939395 - MIR SINE MIR -39 223 167 * 257 274 0 16 chrX 91034740 91034802 -85939338 + L2 LINE L2 3247 3307 -6 432 206 63 8 chrX 91034818 91034944 -85939196 - MIR SINE MIR 0 262 130 675 128 0 0 chrX 91035231 91035325 -85938815 - L1PB2 LINE L1 -33 6118 6025 1756 142 14 11 chrX 91035345 91035620 -85938520 - AluJo SINE Alu -36 276 1 2382 96 0 0 chrX 91035626 91035927 -85938213 - AluSx SINE Alu -11 301 1 324 253 25 0 chrX 91035927 91036006 -85938134 + LTR33A LTR ERVL 442 522 -1 2066 139 3 3 chrX 91036131 91036441 -85937699 - AluSx SINE Alu -2 310 1 519 211 48 27 chrX 91036441 91036588 -85937552 - L1ME3A LINE L1 -1 6169 6020 292 122 0 0 chrX 91036712 91036761 -85937379 - Alu SINE Alu 0 302 254 630 213 49 6 chrX 91036781 91036945 -85937195 - L1ME3A LINE L1 -219 5951 5781 465 300 0 65 chrX 91037060 91037230 -85936910 + L3 LINE CR1 1204 1362 -215 26 0 0 0 chrX 91038518 91038544 -85935596 + AT_rich Low_complexity Low_complexity 1 26 0 2875 226 50 44 chrX 91038557 91038735 -85935405 + L1ME3 LINE L1 4456 4631 -1531 614 113 10 0 chrX 91038735 91038832 -85935308 + L1MA7 LINE L1 6192 6289 -2 2875 226 50 44 chrX 91038832 91038899 -85935241 + L1ME3 LINE L1 4631 4696 -1466 2416 53 0 0 chrX 91038899 91039212 -85934928 + AluY SINE Alu 1 313 0 2875 226 50 44 chrX 91039212 91039528 -85934612 + L1ME3 LINE L1 4696 5009 -1153 1065 211 98 0 chrX 91039528 91039732 -85934408 - MER58A DNA MER1_type 0 224 1 2875 226 50 44 chrX 91039732 91039963 -85934177 + L1ME3 LINE L1 5009 5237 -925 1777 168 0 38 chrX 91039963 91040278 -85933862 + AluJo SINE Alu 1 303 -9 2875 226 50 44 chrX 91040278 91040862 -85933278 + L1ME3 LINE L1 5237 5860 -302 2441 87 7 3 chrX 91040862 91041172 -85932968 + AluSx SINE Alu 1 311 -1 2875 226 50 44 chrX 91041172 91041406 -85932734 + L1ME3 LINE L1 5860 6091 -71 832 211 0 0 chrX 91041518 91041678 -85932462 + FLAM_A SINE Alu 1 160 0 2285 105 0 0 chrX 91042755 91043050 -85931090 + AluSx SINE Alu 3 297 -15 2589 56 0 0 chrX 91043052 91043354 -85930786 + AluSg SINE Alu 1 302 -8 336 310 72 29 chrX 91043395 91043555 -85930585 + MIR SINE MIR 5 166 -63 1903 166 0 0 chrX 91043625 91043915 -85930225 - AluJb SINE Alu -22 290 1 2526 80 0 0 chrX 91044200 91044511 -85929629 - AluSx SINE Alu -1 311 1 848 226 144 14 chrX 91044595 91044963 -85929177 + L1MC5 LINE L1 7268 7683 -278 4881 200 46 23 chrX 91044991 91046059 -85928081 + L1M4 LINE L1 4 1095 -5447 1909 171 0 7 chrX 91046059 91046363 -85927777 + AluSx SINE Alu 1 302 -10 701 280 41 16 chrX 91046375 91046689 -85927451 + L1M4 LINE L1 2202 2523 -4123 2197 101 0 19 chrX 91046708 91047037 -85927103 - AluSx SINE Alu 0 312 2 2515 239 66 7 chrX 91047053 91047132 -85927008 + L1M4 LINE L1 2702 2775 -3869 228 67 0 0 chrX 91047132 91047162 -85926978 + (TA)n Simple_repeat Simple_repeat 2 31 0 2104 101 36 0 chrX 91047162 91047440 -85926700 - AluSx SINE Alu -24 288 1 2515 239 66 7 chrX 91047440 91048478 -85925662 + L1M4 LINE L1 2774 3903 -2741 769 330 15 21 chrX 91048479 91048809 -85925331 + L1M2a LINE L1 3 330 -6838 * 3595 121 30 87 chrX 91048806 91049567 -85924573 + L1MA6 LINE L1 5235 5951 -349 23 33 0 0 chrX 91049850 91049880 -85924260 + GC_rich Low_complexity Low_complexity 1 30 0 1961 160 34 8 chrX 91050862 91051218 -85922922 + L1MA6 LINE L1 5936 6300 0 28 29 0 0 chrX 91051225 91051260 -85922880 + AT_rich Low_complexity Low_complexity 1 35 0 1192 86 0 86 chrX 91051270 91051445 -85922695 + AluSg SINE Alu 23 182 -128 2910 53 12 0 chrX 91051446 91051786 -85922354 + LTR14A LTR ERVK 1 344 0 30973 43 2 4 chrX 91051786 91055428 -85918712 + HERVK14 LTR ERVK 1 3638 -2307 730 186 16 0 chrX 91155429 91155553 -85818587 - MER20 DNA MER1_type -93 126 1 21 0 0 0 chrX 91155704 91155725 -85818415 + AT_rich Low_complexity Low_complexity 1 21 0 560 288 128 45 chrX 91155733 91156091 -85818049 - L2 LINE L2 -787 2527 2140 312 295 135 0 chrX 91156320 91156476 -85817664 - L2 LINE L2 -23 3290 3114 548 303 16 31 chrX 91157456 91157776 -85816364 + HAL1b LINE L1 619 933 -415 297 241 35 85 chrX 91157870 91158011 -85816129 + L1MC/D LINE L1 5681 5814 -1994 225 163 0 0 chrX 91158072 91158121 -85816019 + (TG)n Simple_repeat Simple_repeat 2 50 0 2166 103 0 0 chrX 91158299 91158606 -85815534 + AluSx SINE Alu 1 307 0 264 314 0 0 chrX 91160169 91160255 -85813885 + L1M4 LINE L1 4548 4633 -1513 300 83 0 0 chrX 91160318 91160366 -85813774 + (CA)n Simple_repeat Simple_repeat 2 49 0 223 171 24 0 chrX 91160481 91160522 -85813618 + GA-rich Low_complexity Low_complexity 3 44 0 342 0 0 0 chrX 91160919 91160957 -85813183 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 222 0 0 chrX 91165608 91165671 -85808469 + CT-rich Low_complexity Low_complexity 2 64 0 273 246 0 15 chrX 91169743 91169808 -85804332 - LTR67 LTR ERVL 0 557 494 231 290 0 14 chrX 91171152 91171221 -85802919 - LTR67 LTR ERVL -4 553 486 183 129 0 0 chrX 91174394 91174425 -85799715 + (CTAGGG)n Simple_repeat Simple_repeat 4 34 0 182 37 37 0 chrX 91175623 91175650 -85798490 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 451 282 32 13 chrX 91176207 91176363 -85797777 + L1ME LINE L1 5647 5805 -316 320 197 120 34 chrX 91176741 91176858 -85797282 + MIR SINE MIR 122 248 -14 296 333 41 55 chrX 91177282 91177573 -85796567 - L2 LINE L2 -901 2413 2127 234 224 13 40 chrX 91177937 91178013 -85796127 + CT-rich Low_complexity Low_complexity 2 75 0 4456 140 29 54 chrX 91179477 91179956 -85794184 - L1MA7 LINE L1 -3 6288 5838 752 169 0 70 chrX 91179956 91180098 -85794042 - FLAM_A SINE Alu -1 132 1 4456 140 29 54 chrX 91180098 91180475 -85793665 - L1MA7 LINE L1 -453 5838 5453 1579 74 5 0 chrX 91180526 91180728 -85793412 + L1MA1 LINE L1 6099 6301 -1 257 294 105 44 chrX 91181285 91181714 -85792426 - L1MEd LINE L1 -1800 4329 3875 1982 109 4 11 chrX 91181718 91181993 -85792147 - AluSp SINE Alu -3 310 38 985 156 7 0 chrX 91182097 91182251 -85791889 + AluJb SINE Alu 156 310 -2 466 302 119 42 chrX 91182369 91182753 -85791387 - L1MEd LINE L1 -2389 3740 3387 209 57 29 0 chrX 91182753 91182788 -85791352 + (TAA)n Simple_repeat Simple_repeat 2 37 0 466 302 119 42 chrX 91182788 91182941 -85791199 - L1MEd LINE L1 -2742 3387 3247 1639 80 14 0 chrX 91182941 91183154 -85790986 - L1PA7 LINE L1 -5 6149 5934 966 37 0 0 chrX 91183154 91183261 -85790879 - U6 snRNA snRNA 0 107 1 466 302 119 42 chrX 91183261 91184190 -85789950 - L1MEd LINE L1 -2881 3248 2159 554 289 70 4 chrX 91184558 91184786 -85789354 + MIR SINE MIR 10 252 -10 263 342 82 23 chrX 91184817 91185291 -85788849 - HAL1 LINE L1 -845 1662 1161 2436 84 0 3 chrX 91185834 91186142 -85787998 - AluSq SINE Alu -2 311 5 591 274 36 32 chrX 91186774 91187026 -85787114 - L1MEd LINE L1 -4896 1223 971 440 323 156 32 chrX 91187126 91187562 -85786578 - L1MEd LINE L1 -5629 490 1 397 310 100 65 chrX 91188131 91188421 -85785719 + L2 LINE L2 3014 3313 0 2055 147 0 6 chrX 91189527 91189841 -85784299 - AluSx SINE Alu 0 312 1 2153 106 7 7 chrX 91189948 91190241 -85783899 - AluSx SINE Alu -19 293 1 896 241 98 74 chrX 91190616 91191035 -85783105 + MLT1J2 LTR MaLR 1 429 -21 793 312 36 52 chrX 91191238 91191916 -85782224 - L1ME2 LINE L1 -170 6063 5398 1525 166 3 81 chrX 91191916 91192252 -85781888 - AluJo SINE Alu 0 312 1 793 312 36 52 chrX 91192252 91192698 -85781442 - L1ME2 LINE L1 -835 5398 4946 286 292 45 11 chrX 91192834 91192923 -85781217 + MLT1J1 LTR MaLR 71 162 -284 536 214 112 73 chrX 91192961 91193139 -85781001 + MLT1J2 LTR MaLR 266 450 0 960 273 106 70 chrX 91193258 91194016 -85780124 - L1ME2 LINE L1 -2295 3920 3190 1221 180 23 19 chrX 91194016 91194272 -85779868 - L1MB8 LINE L1 -1 6177 5921 960 273 106 70 chrX 91194272 91194319 -85779821 - L1ME2 LINE L1 -3025 3190 3146 1210 124 21 36 chrX 91194319 91194512 -85779628 + L1PA8A LINE L1 5942 6131 0 960 273 106 70 chrX 91194512 91194671 -85779469 - L1ME2 LINE L1 -3069 3146 2921 297 79 0 0 chrX 91194679 91194717 -85779423 + AluJb SINE Alu 9 46 -256 404 105 18 0 chrX 91194717 91194774 -85779366 - Alu SINE Alu -259 59 2 240 179 36 0 chrX 91194858 91194914 -85779226 - L1MD1 LINE L1 -10 6232 6175 1488 157 8 4 chrX 91194915 91195177 -85778963 + AluJb SINE Alu 50 312 0 16332 31 0 0 chrX 91195182 91197770 -85776370 + L1PA5 LINE L1 3560 6149 -5 373 326 20 50 chrX 91197770 91198166 -85775974 - L1ME2 LINE L1 -3285 2930 2547 1990 125 3 10 chrX 91198177 91198465 -85775675 - AluSx SINE Alu -26 286 1 641 218 7 7 chrX 91198553 91198700 -85775440 - L1MD2 LINE L1 -18 6341 6195 639 208 71 12 chrX 91198732 91198900 -85775240 - L1MD2 LINE L1 -267 6092 5915 * 5571 133 30 6 chrX 91198889 91199902 -85774238 + L1MA4A LINE L1 5267 6303 0 998 148 6 6 chrX 91199900 91200082 -85774058 - L1MD2 LINE L1 -424 5935 5754 * 386 254 7 7 chrX 91200081 91200219 -85773921 - L1ME2 LINE L1 -3762 2453 2316 * 428 291 132 22 chrX 91200267 91200494 -85773646 - L1ME2 LINE L1 -4122 2274 2023 22 0 0 0 chrX 91200695 91200717 -85773423 + AT_rich Low_complexity Low_complexity 1 22 0 3257 198 42 10 chrX 91202287 91203004 -85771136 - Charlie1a DNA MER1_type -711 744 5 1038 122 30 10 chrX 91203187 91203384 -85770756 - L1MA8 LINE L1 -5 6286 6086 225 327 91 0 chrX 91203831 91203941 -85770199 + L2 LINE L2 2571 2690 -624 242 258 203 33 chrX 91204061 91204243 -85769897 + L2 LINE L2 2838 3050 -222 24 0 0 0 chrX 91204322 91204346 -85769794 + AT_rich Low_complexity Low_complexity 1 24 0 183 184 0 0 chrX 91206566 91206604 -85767536 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 1370 310 52 14 chrX 91211871 91212495 -85761645 + L2 LINE L2 2632 3296 -17 192 77 0 0 chrX 91212497 91212523 -85761617 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1369 219 20 86 chrX 91215013 91215502 -85758638 - LTR16A1 LTR ERVL 0 457 1 192 77 0 0 chrX 91216564 91216590 -85757550 + (TTG)n Simple_repeat Simple_repeat 2 27 0 347 237 219 9 chrX 91218062 91218176 -85755964 - MIR SINE MIR -123 139 2 322 327 123 50 chrX 91218377 91218760 -85755380 + L2 LINE L2 2125 2479 -835 1937 189 11 11 chrX 91218760 91219125 -85755015 + MLT1A1 LTR MaLR 1 365 0 322 327 123 50 chrX 91219125 91219521 -85754619 + L2 LINE L2 2479 2961 -353 324 0 0 0 chrX 91219706 91219742 -85754398 + (TG)n Simple_repeat Simple_repeat 1 36 0 313 244 45 51 chrX 91220723 91220899 -85753241 + Charlie7 DNA MER1_type 2438 2612 0 2830 196 31 27 chrX 91221962 91222675 -85751465 - L1MB7 LINE L1 -5 6179 5464 1140 228 61 26 chrX 91222677 91223102 -85751038 - L1MB7 LINE L1 -982 5164 4725 211 264 115 23 chrX 91223312 91223399 -85750741 + L2 LINE L2 3178 3272 0 1920 297 111 22 chrX 91223433 91224296 -85749844 + L2 LINE L2 415 1354 -1960 309 360 48 36 chrX 91224537 91224787 -85749353 + L1MEd LINE L1 58 310 -5809 722 248 33 0 chrX 91224979 91225221 -85748919 + L1MEd LINE L1 2318 2567 -3562 1058 263 28 50 chrX 91225474 91225870 -85748270 - L2 LINE L2 -4 3309 2923 922 294 31 20 chrX 91225955 91226348 -85747792 + LTR16A1 LTR ERVL 73 457 0 237 308 83 0 chrX 91226583 91226716 -85747424 - L1ME4a LINE L1 -28 6093 5950 23 33 0 0 chrX 91226768 91226798 -85747342 + AT_rich Low_complexity Low_complexity 1 30 0 5852 140 10 10 chrX 91227539 91228701 -85745439 + L1MA7 LINE L1 5132 6290 -1 2928 130 4 0 chrX 91228806 91229259 -85744881 + L1PA16 LINE L1 5703 6157 -9 21 0 0 0 chrX 91229387 91229408 -85744732 + AT_rich Low_complexity Low_complexity 1 21 0 530 261 107 20 chrX 91229428 91229869 -85744271 - L1ME4a LINE L1 -89 6032 5554 1324 145 5 0 chrX 91229959 91230173 -85743967 + L1PA16 LINE L1 5707 5921 -245 302 163 133 44 chrX 91230248 91230361 -85743779 - L1P LINE L1 -738 5413 5291 2576 44 0 0 chrX 91230558 91230855 -85743285 + AluY SINE Alu 1 297 -14 2082 152 7 0 chrX 91230994 91231303 -85742837 + AluSx SINE Alu 1 311 -1 566 274 84 46 chrX 91233745 91233982 -85740158 - MIR SINE MIR -5 257 12 2432 219 42 26 chrX 91234280 91235000 -85739140 - L1M4 LINE L1 -1892 4254 3524 719 306 5 5 chrX 91236450 91236659 -85737481 + MIR SINE MIR 53 261 -1 358 114 29 0 chrX 91239980 91240050 -85734090 + (TA)n Simple_repeat Simple_repeat 1 72 0 284 0 28 0 chrX 91240054 91240090 -85734050 + (GA)n Simple_repeat Simple_repeat 1 37 0 1751 150 4 4 chrX 91240090 91240364 -85733776 - AluJb SINE Alu -38 274 1 24 0 0 0 chrX 91240596 91240620 -85733520 + AT_rich Low_complexity Low_complexity 1 24 0 633 165 10 0 chrX 91240712 91240815 -85733325 + U6 snRNA snRNA 1 104 -3 10246 197 24 18 chrX 91291303 91292872 -85681268 - L1PA12 LINE L1 -3325 4259 2701 1861 140 10 0 chrX 91292872 91293172 -85680968 - AluSq SINE Alu -10 303 1 2069 133 3 0 chrX 91293173 91293474 -85680666 - AluSx SINE Alu -10 302 1 10246 197 24 18 chrX 91293474 91295327 -85678813 - L1PA12 LINE L1 -4882 2702 5 1716 201 159 7 chrX 91295368 91295821 -85678319 - L1ME3A LINE L1 -4 6166 5645 450 0 0 0 chrX 91302671 91302721 -85671419 + (TG)n Simple_repeat Simple_repeat 2 51 0 223 171 24 0 chrX 91303118 91303159 -85670981 + CT-rich Low_complexity Low_complexity 3 44 0 300 83 0 0 chrX 91303274 91303322 -85670818 + (TG)n Simple_repeat Simple_repeat 2 49 0 264 314 0 0 chrX 91303385 91303471 -85670669 - L1M4 LINE L1 -1513 4633 4548 2165 103 0 0 chrX 91305034 91305341 -85668799 - AluSx SINE Alu 0 307 1 225 163 0 0 chrX 91305519 91305568 -85668572 + (CA)n Simple_repeat Simple_repeat 2 50 0 297 241 35 85 chrX 91305629 91305770 -85668370 - L1MC/D LINE L1 -1994 5814 5681 548 303 16 31 chrX 91305864 91306184 -85667956 - HAL1b LINE L1 -415 933 619 312 295 135 0 chrX 91307164 91307320 -85666820 + L2 LINE L2 3114 3290 -23 560 288 128 45 chrX 91307549 91307907 -85666233 + L2 LINE L2 2140 2527 -787 21 0 0 0 chrX 91307915 91307936 -85666204 + AT_rich Low_complexity Low_complexity 1 21 0 986 165 203 0 chrX 91308087 91308269 -85665871 + MER20 DNA MER1_type 1 219 0 21 0 0 0 chrX 91308400 91308421 -85665719 + AT_rich Low_complexity Low_complexity 1 21 0 249 273 189 30 chrX 91308421 91308553 -85665587 - L2 LINE L2 -2 3311 3159 289 220 0 0 chrX 91308801 91308860 -85665280 + HAL1 LINE L1 2093 2151 -356 870 228 101 69 chrX 91309584 91309785 -85664355 - MLT1H LTR MaLR -3 546 353 757 229 5 0 chrX 91309785 91309973 -85664167 + MER53 DNA DNA 1 189 0 870 228 101 69 chrX 91309973 91310241 -85663899 - MLT1H LTR MaLR -196 353 21 839 310 81 57 chrX 91310377 91310906 -85663234 - HAL1 LINE L1 -614 1893 1352 290 287 51 36 chrX 91311168 91311300 -85662840 - L1ME3A LINE L1 -209 5961 5824 2190 114 3 3 chrX 91311300 91311608 -85662532 - AluSp SINE Alu -5 308 1 290 287 51 36 chrX 91311608 91311670 -85662470 - L1ME3A LINE L1 -346 5824 5764 275 321 108 5 chrX 91311710 91311922 -85662218 + L1M4 LINE L1 4063 4296 -1850 450 0 0 0 chrX 91312453 91312503 -85661637 + (CA)n Simple_repeat Simple_repeat 2 51 0 257 222 0 0 chrX 91317154 91317217 -85656923 + CT-rich Low_complexity Low_complexity 2 64 0 273 246 0 15 chrX 91321289 91321354 -85652786 - LTR67 LTR ERVL 0 557 494 231 290 0 14 chrX 91322700 91322769 -85651371 - LTR67 LTR ERVL -4 553 486 183 129 0 0 chrX 91325942 91325973 -85648167 + (CTAGGG)n Simple_repeat Simple_repeat 4 34 0 182 37 37 0 chrX 91327171 91327198 -85646942 + (GAAA)n Simple_repeat Simple_repeat 1 28 0 451 282 32 13 chrX 91327755 91327911 -85646229 + L1ME LINE L1 5647 5805 -316 320 197 120 34 chrX 91328289 91328406 -85645734 + MIR SINE MIR 122 248 -14 296 333 41 55 chrX 91328830 91329121 -85645019 - L2 LINE L2 -901 2413 2127 234 224 13 40 chrX 91329485 91329561 -85644579 + CT-rich Low_complexity Low_complexity 2 75 0 4456 140 29 54 chrX 91331025 91331504 -85642636 - L1MA7 LINE L1 -3 6288 5838 742 170 0 71 chrX 91331504 91331645 -85642495 - FLAM_A SINE Alu -2 131 1 4456 140 29 54 chrX 91331645 91332022 -85642118 - L1MA7 LINE L1 -453 5838 5453 1579 74 5 0 chrX 91332073 91332275 -85641865 + L1MA1 LINE L1 6099 6301 -1 257 294 105 44 chrX 91332833 91333262 -85640878 - L1MEd LINE L1 -1800 4329 3875 1982 109 4 11 chrX 91333266 91333541 -85640599 - AluSp SINE Alu -3 310 38 985 156 7 0 chrX 91333645 91333799 -85640341 + AluJb SINE Alu 156 310 -2 466 302 119 42 chrX 91333917 91334301 -85639839 - L1MEd LINE L1 -2389 3740 3387 209 57 29 0 chrX 91334301 91334336 -85639804 + (TAA)n Simple_repeat Simple_repeat 2 37 0 466 302 119 42 chrX 91334336 91334489 -85639651 - L1MEd LINE L1 -2742 3387 3247 1639 80 14 0 chrX 91334489 91334702 -85639438 - L1PA7 LINE L1 -5 6149 5934 966 37 0 0 chrX 91334702 91334809 -85639331 - U6 snRNA snRNA 0 107 1 466 302 119 42 chrX 91334809 91335738 -85638402 - L1MEd LINE L1 -2881 3248 2159 554 289 70 4 chrX 91336106 91336334 -85637806 + MIR SINE MIR 10 252 -10 263 342 82 23 chrX 91336365 91336839 -85637301 - HAL1 LINE L1 -845 1662 1161 2436 84 0 3 chrX 91337382 91337690 -85636450 - AluSq SINE Alu -2 311 5 591 274 36 32 chrX 91338322 91338574 -85635566 - L1MEd LINE L1 -4896 1223 971 440 323 156 32 chrX 91338674 91339110 -85635030 - L1MEd LINE L1 -5629 490 1 397 310 100 65 chrX 91339679 91339969 -85634171 + L2 LINE L2 3014 3313 0 2055 147 0 6 chrX 91341075 91341389 -85632751 - AluSx SINE Alu 0 312 1 2153 106 7 7 chrX 91341496 91341789 -85632351 - AluSx SINE Alu -19 293 1 896 241 98 74 chrX 91342164 91342583 -85631557 + MLT1J2 LTR MaLR 1 429 -21 793 312 36 52 chrX 91342786 91343464 -85630676 - L1ME2 LINE L1 -170 5994 5329 1519 165 3 84 chrX 91343464 91343801 -85630339 - AluJo SINE Alu 0 312 1 793 312 36 52 chrX 91343801 91344247 -85629893 - L1ME2 LINE L1 -835 5329 4877 286 292 45 11 chrX 91344383 91344472 -85629668 + MLT1J1 LTR MaLR 71 162 -284 536 214 112 73 chrX 91344510 91344688 -85629452 + MLT1J2 LTR MaLR 266 450 0 949 274 106 70 chrX 91344807 91345565 -85628575 - L1ME2 LINE L1 -2295 3851 3121 1221 180 23 19 chrX 91345565 91345821 -85628319 - L1MB8 LINE L1 -1 6177 5921 949 274 106 70 chrX 91345821 91345868 -85628272 - L1ME2 LINE L1 -3025 3121 3077 1210 124 21 36 chrX 91345868 91346061 -85628079 + L1PA8A LINE L1 5942 6131 0 949 274 106 70 chrX 91346061 91346220 -85627920 - L1ME2 LINE L1 -3069 3077 2852 297 79 0 0 chrX 91346228 91346266 -85627874 + AluJb SINE Alu 9 46 -256 404 105 18 0 chrX 91346266 91346323 -85627817 - Alu SINE Alu -259 59 2 240 179 36 0 chrX 91346407 91346463 -85627677 - L1MD1 LINE L1 -10 6232 6175 1488 157 8 4 chrX 91346464 91346726 -85627414 + AluJb SINE Alu 50 312 0 11579 29 1 0 chrX 91346731 91348077 -85626063 + L1P LINE L1 3560 4907 -1239 738 130 0 35 chrX 91349040 91349155 -85624985 - FRAM SINE Alu -22 154 44 218 204 0 20 chrX 91350581 91350630 -85623510 + G-rich Low_complexity Low_complexity 1 48 0 577 263 158 3 chrX 91354864 91355149 -85618991 + L1ME LINE L1 5492 5820 -301 1781 86 0 0 chrX 91355214 91355470 -85618670 - L1MA2 LINE L1 0 6304 6049 860 91 39 13 chrX 91355478 91355489 -85618651 - L1MA3 LINE L1 -237 6068 6059 6539 71 10 0 chrX 91355489 91356411 -85617729 - L1PA8A LINE L1 -2 6129 5207 860 91 39 13 chrX 91356411 91356553 -85617587 - L1MA3 LINE L1 -246 6059 5911 341 247 47 27 chrX 91356710 91356860 -85617280 + L1ME4a LINE L1 5773 5925 -196 371 159 9 115 chrX 91357751 91357826 -85616314 + MER104 DNA Tc2 40 101 -1797 2389 73 0 17 chrX 91357826 91358167 -85615973 - AluSq SINE Alu 0 313 1 371 159 9 115 chrX 91358167 91358204 -85615936 + MER104 DNA Tc2 101 140 -40 1955 95 0 0 chrX 91358204 91358475 -85615665 + AluSx SINE Alu 44 314 0 21 57 0 0 chrX 91358992 91359027 -85615113 + AT_rich Low_complexity Low_complexity 1 35 0 477 298 53 18 chrX 91359225 91359396 -85614744 - MIR SINE MIR -22 240 64 207 329 26 0 chrX 91359826 91359902 -85614238 + CT-rich Low_complexity Low_complexity 2 79 0 1984 141 0 7 chrX 91360516 91360815 -85613325 + AluJb SINE Alu 1 297 -15 2863 169 26 115 chrX 91361180 91361646 -85612494 - LTR8 LTR ERV1 0 691 316 1942 137 3 0 chrX 91361646 91361931 -85612209 - AluSx SINE Alu -26 286 1 2863 169 26 115 chrX 91361931 91362222 -85611918 - LTR8 LTR ERV1 -375 316 1 846 216 204 16 chrX 91364430 91364680 -85609460 + AluYa8 SINE Alu 1 297 -3 23 33 0 0 chrX 91364770 91364800 -85609340 + AT_rich Low_complexity Low_complexity 1 30 0 2072 233 55 30 chrX 91364908 91365432 -85608708 - L1M4 LINE L1 -991 5155 4602 360 43 0 0 chrX 91365432 91365478 -85608662 + (CA)n Simple_repeat Simple_repeat 2 47 0 2072 233 55 30 chrX 91365478 91365772 -85608368 - L1M4 LINE L1 -1544 4602 4317 21233 114 13 80 chrX 91365802 91370029 -85604111 + L1P LINE L1 12 3954 -2192 1901 91 55 0 chrX 91370029 91370302 -85603838 + L1PA7 LINE L1 5851 6139 -15 298 204 23 0 chrX 91370302 91370390 -85603750 + (TA)n Simple_repeat Simple_repeat 1 90 0 717 154 0 54 chrX 91370408 91370538 -85603602 + FLAM_C SINE Alu 1 123 -20 1546 275 40 16 chrX 91370548 91371191 -85602949 - L1M4 LINE L1 -1804 4342 3684 328 274 0 79 chrX 91371176 91371340 -85602800 - L1M4 LINE L1 -1946 4200 4050 * 1257 119 11 88 chrX 91371381 91371482 -85602658 + MLT2D LTR ERVL 1 108 -306 2123 123 10 7 chrX 91371482 91371784 -85602356 - AluSx SINE Alu -9 303 1 1257 119 11 88 chrX 91371784 91371943 -85602197 + MLT2D LTR ERVL 108 241 -173 2039 155 28 0 chrX 91371949 91372337 -85601803 - L1 LINE L1 -1984 5122 4724 1284 270 65 20 chrX 91372309 91372860 -85601280 - L1 LINE L1 -4632 2405 1830 * 2228 238 146 43 chrX 91372871 91373869 -85600271 - L1 LINE L1 -5865 1165 65 213 39 0 0 chrX 91374000 91374026 -85600114 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2339 94 3 3 chrX 91374130 91374439 -85599701 + AluSg SINE Alu 2 310 0 10702 204 19 21 chrX 91374493 91376382 -85597758 - L1PA16 LINE L1 -4 6162 4269 4606 33 0 0 chrX 91376382 91376928 -85597212 - L1PA4 LINE L1 -2 6153 5608 10702 204 19 21 chrX 91376928 91378878 -85595262 - L1PA16 LINE L1 -1897 4269 2344 374 284 37 16 chrX 91378972 91379162 -85594978 - L1MEd LINE L1 -4655 1655 1462 42349 38 1 1 chrX 91379279 91385433 -85588707 - L1PA3 LINE L1 -3 6152 1 439 307 73 45 chrX 91385479 91386236 -85587904 - L1MEd LINE L1 -4896 1235 569 1607 104 27 4 chrX 91386644 91386904 -85587236 - L1PA13 LINE L1 0 6163 5898 13126 148 24 14 chrX 91386905 91387374 -85586766 - L1PA13 LINE L1 -380 5783 5320 198 0 0 0 chrX 91387374 91387396 -85586744 + (TTG)n Simple_repeat Simple_repeat 3 24 0 13126 148 24 14 chrX 91387396 91389919 -85584221 - L1PA13 LINE L1 -843 5320 2761 3235 236 65 9 chrX 91389908 91391313 -85582827 - L1M4 LINE L1 -2880 4077 2584 * 260 213 0 100 chrX 91391710 91391790 -85582350 + L1M4b LINE L1 1154 1225 -5634 763 202 10 40 chrX 91392024 91392222 -85581918 + L1M4b LINE L1 1205 1396 -5463 850 296 30 11 chrX 91392365 91392635 -85581505 - L1M4 LINE L1 -6040 819 545 535 230 42 0 chrX 91392631 91392796 -85581344 + L1ME4a LINE L1 1972 2143 -4814 * 37805 72 8 9 chrX 91392812 91398964 -85575176 + L1PA6 LINE L1 11 6154 0 1299 244 61 5 chrX 91398987 91399396 -85574744 + L1ME4a LINE L1 2178 2609 -4529 1685 148 192 35 chrX 91399400 91399832 -85574308 - MLT1D LTR MaLR -5 500 1 2344 311 70 19 chrX 91400128 91401107 -85573033 + ERVL LTR ERVL 4180 5207 -557 1471 268 58 30 chrX 91401463 91401964 -85572176 + LTR33 LTR ERVL 3 517 -4 549 275 70 102 chrX 91402131 91403051 -85571089 + L1ME4a LINE L1 4769 5658 -1299 219 231 19 19 chrX 91403776 91403828 -85570312 - MER5A DNA MER1_type -95 94 43 * 238 320 13 13 chrX 91403784 91403859 -85570281 + MER5A DNA MER1_type 115 189 0 22 0 0 0 chrX 91404282 91404304 -85569836 + AT_rich Low_complexity Low_complexity 1 22 0 1988 125 34 10 chrX 91405063 91405360 -85568780 - AluSx SINE Alu -8 304 1 6637 43 1 0 chrX 91408122 91409326 -85564814 + L1PA5 LINE L1 4837 6041 -113 622 59 0 0 chrX 91409327 91409425 -85564715 + L1PA3 LINE L1 10 380 -6081 * 38353 36 25 1 chrX 91409392 91414835 -85559305 + L1PA3 LINE L1 893 6470 0 1172 30 0 0 chrX 91414835 91414966 -85559174 + L1PA5 LINE L1 6023 6154 0 320 291 74 20 chrX 91415076 91415224 -85558916 + L1ME4a LINE L1 6073 6228 -2391 204 226 0 0 chrX 91415248 91415301 -85558839 + (TA)n Simple_repeat Simple_repeat 2 54 0 566 283 142 36 chrX 91415302 91415662 -85558478 + L1ME4a LINE L1 6379 6775 -157 393 22 0 0 chrX 91415981 91416027 -85558113 + (TG)n Simple_repeat Simple_repeat 1 46 0 198 283 0 33 chrX 91416055 91416115 -85558025 + L2 LINE L2 3164 3221 -51 407 309 55 33 chrX 91416259 91416566 -85557574 + L1M4 LINE L1 4013 4326 -1820 2047 125 0 0 chrX 91416993 91417274 -85556866 - AluSx SINE Alu -3 309 29 35 24 0 0 chrX 91418899 91418941 -85555199 + AT_rich Low_complexity Low_complexity 1 42 0 1671 184 4 0 chrX 91419220 91419549 -85554591 + AluJo SINE Alu 5 334 0 380 339 0 18 chrX 91424545 91424713 -85549427 + (CTGGGG)n Simple_repeat Simple_repeat 1 165 0 237 353 0 17 chrX 91424985 91425158 -85548982 + (CTGGGG)n Simple_repeat Simple_repeat 3 172 0 948 70 0 0 chrX 91426581 91426710 -85547430 + (CTGGGG)n Simple_repeat Simple_repeat 2 130 0 657 299 81 19 chrX 91429327 91429680 -85544460 + L1ME4a LINE L1 5498 5897 -224 2470 73 0 6 chrX 91429796 91430109 -85544031 - AluSx SINE Alu -1 311 1 412 226 85 9 chrX 91430206 91430312 -85543828 - MER115 DNA AcHobo 0 693 580 336 194 132 14 chrX 91430297 91430441 -85543699 - Zaphod DNA AcHobo -3232 799 639 * 1015 193 49 8 chrX 91430460 91430803 -85543337 + LTR16A LTR ERVL 21 450 0 15634 198 37 9 chrX 91430803 91433813 -85540327 + HERV16 LTR ERVL 1 3096 -1900 803 194 39 17 chrX 91433884 91434064 -85540076 - MER66A LTR ERV1 -10 468 285 231 36 0 0 chrX 91434104 91434132 -85540008 + (CAG)n Simple_repeat Simple_repeat 2 29 0 784 177 248 87 chrX 91434175 91434497 -85539643 - MER41B LTR ERV1 -148 487 114 708 313 48 29 chrX 91434564 91434808 -85539332 + HERV16 LTR ERVL 3200 3455 -2030 1733 172 13 7 chrX 91434808 91435110 -85539030 - AluJb SINE Alu -8 304 1 708 313 48 29 chrX 91435110 91435216 -85538924 + HERV16 LTR ERVL 3455 3557 -1928 247 175 0 0 chrX 91435250 91435290 -85538850 - Zaphod DNA AcHobo -3895 136 97 208 147 0 0 chrX 91435290 91435324 -85538816 + (T)n Simple_repeat Simple_repeat 1 34 0 7990 27 0 0 chrX 91435366 91436986 -85537154 - L1PA4 LINE L1 -3 6152 4525 180 0 0 0 chrX 91437004 91437024 -85537116 + (TG)n Simple_repeat Simple_repeat 1 20 0 352 283 19 69 chrX 91437513 91437580 -85536560 - L2 LINE L2 -927 2387 2318 1384 226 108 33 chrX 91437580 91438005 -85536135 + MSTB2 LTR MaLR 1 457 0 352 283 19 69 chrX 91438005 91438096 -85536044 - L2 LINE L2 -996 2318 2237 1718 112 79 36 chrX 91438289 91438408 -85535732 - L1MB3 LINE L1 -7 6176 6064 2269 108 0 3 chrX 91438408 91438713 -85535427 - AluSq SINE Alu -9 304 1 1718 112 79 36 chrX 91438713 91438896 -85535244 - L1MB3 LINE L1 -119 6064 5861 1620 190 61 50 chrX 91438900 91439087 -85535053 - MLT1A2 LTR MaLR -4 370 176 231 36 0 0 chrX 91439087 91439115 -85535025 + (GA)n Simple_repeat Simple_repeat 1 28 0 1620 190 61 50 chrX 91439115 91439290 -85534850 - MLT1A2 LTR MaLR -198 176 4 833 194 93 41 chrX 91439497 91439765 -85534375 - HAL1 LINE L1 -122 2385 2104 735 268 101 0 chrX 91439781 91439979 -85534161 + MIR SINE MIR 19 236 -26 1317 265 58 0 chrX 91440008 91440370 -85533770 - HAL1 LINE L1 -575 1932 1550 2618 224 58 47 chrX 91440372 91440422 -85533718 - HAL1 LINE L1 -1 2506 2458 1793 133 31 128 chrX 91440422 91440804 -85533336 + MER7A DNA MER2_type 1 343 -3 2618 224 58 47 chrX 91440804 91440824 -85533316 - HAL1 LINE L1 -49 2458 2440 1778 209 28 36 chrX 91440824 91441217 -85532923 - MLT1B LTR MaLR 0 390 1 2618 224 58 47 chrX 91441217 91442017 -85532123 - HAL1 LINE L1 -67 2440 1625 795 145 32 8 chrX 91442141 91442265 -85531875 - AluJb SINE Alu -179 133 7 819 214 67 0 chrX 91442357 91442535 -85531605 - HAL1 LINE L1 -865 1642 1453 291 252 13 57 chrX 91442637 91442796 -85531344 - L1MC4a LINE L1 -1785 6023 5872 638 229 53 5 chrX 91442817 91443005 -85531135 - L1MC4a LINE L1 -1922 5886 5690 * 1186 256 120 17 chrX 91442989 91443407 -85530733 - HAL1 LINE L1 -2045 462 2 785 231 98 95 chrX 91443412 91444087 -85530053 - HAL1 LINE L1 -943 1564 888 642 193 83 0 chrX 91444210 91444319 -85529821 - FRAM SINE Alu -17 159 42 882 297 97 69 chrX 91444321 91444670 -85529470 - HAL1 LINE L1 -1810 697 320 2129 110 38 0 chrX 91444670 91444962 -85529178 + AluSx SINE Alu 1 303 -9 882 297 97 69 chrX 91444962 91445265 -85528875 - HAL1 LINE L1 -2187 320 27 244 91 80 96 chrX 91445271 91445327 -85528813 - MLT2C2 LTR ERVL 0 464 417 260 250 23 0 chrX 91445352 91445440 -85528700 + L1MC4 LINE L1 6614 6703 -1339 266 0 29 0 chrX 91445442 91445476 -85528664 + (GA)n Simple_repeat Simple_repeat 2 36 0 2161 192 44 0 chrX 91445481 91445867 -85528273 - MLT2C2 LTR ERVL -61 403 1 5818 184 42 65 chrX 91445873 91447386 -85526754 - ERVL-C2 LTR ERVL -24 5740 4262 1101 210 7 37 chrX 91447404 91447856 -85526284 - ERVL LTR ERVL -5061 703 191 860 148 6 22 chrX 91447876 91448058 -85526082 + CT-rich Low_complexity Low_complexity 1 179 0 308 136 0 0 chrX 91448058 91448102 -85526038 + (TC)n Simple_repeat Simple_repeat 1 44 0 1806 174 7 10 chrX 91448102 91448412 -85525728 - AluSx SINE Alu -3 309 1 3126 118 30 2 chrX 91449153 91449587 -85524553 + MER83 LTR ERV1 3 448 0 1060 179 22 0 chrX 91449909 91450093 -85524047 - AluJb SINE Alu -8 304 117 300 207 0 16 chrX 91450093 91450168 -85523972 - AluJ/monomer SINE Alu -250 52 1 542 244 177 47 chrX 91450338 91450740 -85523400 + HAL1 LINE L1 1160 1613 -894 440 290 65 46 chrX 91451032 91451366 -85522774 + L1MDa LINE L1 2416 2753 -3787 32 26 0 0 chrX 91451424 91451463 -85522677 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chrX 91451515 91451546 -85522594 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 91451621 91451642 -85522498 + AT_rich Low_complexity Low_complexity 1 21 0 5183 125 11 8 chrX 91451793 91452657 -85521483 - L1MB1 LINE L1 -66 6102 5236 3008 225 101 26 chrX 91452659 91453500 -85520640 - L1MB1 LINE L1 -1748 4398 3461 2199 123 0 13 chrX 91453500 91453802 -85520338 - AluSq SINE Alu -15 298 1 3008 225 101 26 chrX 91453802 91454006 -85520134 - L1MB1 LINE L1 -2685 3461 3274 939 183 10 43 chrX 91454024 91454232 -85519908 - MLT1A1 LTR MaLR -164 201 1 220 320 64 48 chrX 91454243 91454368 -85519772 - L2 LINE L2 -256 3016 2890 5081 127 20 11 chrX 91454801 91455691 -85518449 - L1PA16 LINE L1 -3 6163 5266 279 232 63 21 chrX 91455716 91455811 -85518329 - L1MC5 LINE L1 -54 7907 7809 1335 176 89 145 chrX 91455839 91456086 -85518054 - L1MC5 LINE L1 -271 7690 7431 761 209 0 0 chrX 91456086 91456215 -85517925 - FLAM_A SINE Alu -4 129 1 1335 176 89 145 chrX 91456215 91456595 -85517545 - L1MC5 LINE L1 -530 7431 7031 2042 104 28 0 chrX 91456595 91456882 -85517258 + AluSx SINE Alu 6 300 -12 1335 176 89 145 chrX 91456882 91456897 -85517243 - L1MC5 LINE L1 -930 7031 7017 2179 104 3 0 chrX 91456897 91457184 -85516956 - AluSx SINE Alu -24 288 1 1335 176 89 145 chrX 91457184 91457470 -85516670 - L1MC5 LINE L1 -944 7017 6812 1998 95 0 0 chrX 91457677 91457929 -85516211 - AluSq SINE Alu -61 252 1 191 59 0 29 chrX 91458008 91458042 -85516098 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 911 184 56 0 chrX 91459036 91459215 -85514925 - MER5A DNA MER1_type 0 189 1 24 85 0 0 chrX 91459765 91459824 -85514316 + AT_rich Low_complexity Low_complexity 1 59 0 365 214 11 34 chrX 91459958 91460047 -85514093 + MLT1E LTR MaLR 1 87 -506 3840 136 34 14 chrX 91460220 91460917 -85513223 - L1MB3 LINE L1 -23 6160 5450 32 95 0 0 chrX 91460917 91461012 -85513128 + AT_rich Low_complexity Low_complexity 1 95 0 2377 96 3 0 chrX 91461503 91461806 -85512334 + AluSc SINE Alu 1 304 -5 277 274 48 0 chrX 91462642 91462726 -85511414 - MIR SINE MIR -72 190 103 1716 147 0 34 chrX 91462887 91463200 -85510940 - AluSx SINE Alu 0 303 1 2115 101 0 11 chrX 91463233 91463542 -85510598 + AluSq SINE Alu 1 306 0 233 189 54 14 chrX 91463545 91463619 -85510521 - L1ME4a LINE L1 -28 6093 6017 1233 230 49 20 chrX 91464127 91464666 -85509474 + L1MEc LINE L1 2042 2542 -3673 466 191 0 0 chrX 91464678 91464767 -85509373 - L1ME4a LINE L1 -296 5874 5786 247 277 34 8 chrX 91464841 91464960 -85509180 + L1ME1 LINE L1 2705 2826 -3389 860 249 22 13 chrX 91465031 91465348 -85508792 + L1ME1 LINE L1 5091 5410 -805 3033 195 64 6 chrX 91465352 91466025 -85508115 + L1ME1 LINE L1 5519 6230 -5 295 333 75 0 chrX 91466080 91466173 -85507967 + MER91A DNA MER1_type 96 195 -1 23 68 0 0 chrX 91466194 91466238 -85507902 + AT_rich Low_complexity Low_complexity 1 44 0 2074 133 0 3 chrX 91466300 91466593 -85507547 - AluSx SINE Alu -20 292 1 309 225 18 97 chrX 91466767 91466984 -85507156 - L1MC4 LINE L1 -792 7169 7029 423 268 105 42 chrX 91467277 91467422 -85506718 + L1ME4a LINE L1 4886 5020 -1201 2131 123 10 7 chrX 91467422 91467732 -85506408 - AluJb SINE Alu -1 311 1 423 268 105 42 chrX 91467732 91467744 -85506396 + L1ME4a LINE L1 5020 5030 -1191 1724 81 0 0 chrX 91467744 91467982 -85506158 - AluY SINE Alu 0 311 74 423 268 105 42 chrX 91467982 91468383 -85505757 + L1ME4a LINE L1 5030 5478 -743 * 586 298 52 12 chrX 91468378 91468707 -85505433 + L1ME4a LINE L1 5690 6031 -90 3172 221 56 35 chrX 91468710 91468868 -85505272 - L1ME2 LINE L1 -9 6155 6002 2515 144 90 14 chrX 91468868 91469312 -85504828 + MER66A LTR ERV1 1 478 0 3172 221 56 35 chrX 91469312 91469447 -85504693 - L1ME2 LINE L1 -162 6002 5871 2030 140 0 29 chrX 91469447 91469761 -85504379 - AluSx SINE Alu -7 305 1 3172 221 56 35 chrX 91469761 91470598 -85503542 - L1ME2 LINE L1 -293 5871 5008 26320 36 37 2 chrX 91470687 91474124 -85500016 + L1P LINE L1 604 4161 -1985 201 74 0 0 chrX 91474125 91474152 -85499988 + (A)n Simple_repeat Simple_repeat 1 27 0 1789 153 7 23 chrX 91474171 91474471 -85499669 + AluJb SINE Alu 3 297 -15 322 319 65 26 chrX 91474537 91474766 -85499374 + L1MC4a LINE L1 2366 2603 -3937 318 312 91 25 chrX 91474798 91475195 -85498945 + L1MC4a LINE L1 2677 3099 -3441 683 300 81 26 chrX 91475307 91475472 -85498668 - L2 LINE L2 0 3313 3126 581 80 11 0 chrX 91475472 91475560 -85498580 + L1MA2 LINE L1 6216 6304 0 683 300 81 26 chrX 91475560 91475667 -85498473 - L2 LINE L2 -187 3126 3026 983 272 87 69 chrX 91475739 91476300 -85497840 + L1MC4a LINE L1 3269 3818 -2722 2279 106 30 0 chrX 91476300 91476603 -85497537 + AluSx SINE Alu 1 312 0 983 272 87 69 chrX 91476603 91477513 -85496627 + L1MC4a LINE L1 3818 4767 -1773 225 167 0 0 chrX 91478084 91478132 -85496008 - L1MC4 LINE L1 -1337 6705 6658 294 279 0 0 chrX 91478210 91478314 -85495826 + HAL1b LINE L1 1245 1348 0 292 284 66 74 chrX 91478369 91478447 -85495693 + L1MC4a LINE L1 4776 4853 -1687 459 0 0 0 chrX 91478447 91478498 -85495642 + (CA)n Simple_repeat Simple_repeat 1 51 0 292 284 66 74 chrX 91478498 91478627 -85495513 + L1MC4a LINE L1 4853 4982 -1558 2213 122 0 0 chrX 91478627 91478923 -85495217 - AluSx SINE Alu -16 296 1 292 284 66 74 chrX 91478923 91479171 -85494969 + L1MC4a LINE L1 4982 5228 -1312 477 0 0 0 chrX 91479266 91479319 -85494821 + (CA)n Simple_repeat Simple_repeat 2 54 0 1984 129 7 0 chrX 91479440 91479720 -85494420 + AluJo SINE Alu 13 294 -18 370 301 70 11 chrX 91479729 91479982 -85494158 + L1MC4a LINE L1 5567 5804 -765 2023 142 0 10 chrX 91479982 91480284 -85493856 + AluJb SINE Alu 2 300 -12 370 301 70 11 chrX 91480284 91480328 -85493812 + L1MC4a LINE L1 5804 5844 -725 2082 159 28 6 chrX 91480328 91480686 -85493454 + MER47A DNA MER2_type 1 366 0 370 301 70 11 chrX 91480686 91480792 -85493348 + L1MC4a LINE L1 5844 5987 -582 348 243 0 19 chrX 91480971 91481078 -85493062 + L1MC4a LINE L1 6191 6295 -1907 2201 110 0 0 chrX 91481093 91481383 -85492757 + AluSx SINE Alu 1 290 -22 1322 209 21 38 chrX 91481530 91481841 -85492299 - AluJo SINE Alu 0 306 1 766 267 55 61 chrX 91481963 91482032 -85492108 - L1MC/D LINE L1 -2014 5794 5726 2267 109 7 0 chrX 91482032 91482335 -85491805 - AluSg SINE Alu -5 305 1 766 267 55 61 chrX 91482335 91482790 -85491350 - L1MC/D LINE L1 -2082 5726 5273 3775 133 13 18 chrX 91483874 91483975 -85490165 - L1 LINE L1 -1584 4562 4462 502 55 11 132 chrX 91483975 91484024 -85490116 - MADE1 DNA Mariner 0 80 45 2248 105 14 0 chrX 91484024 91484320 -85489820 + AluSx SINE Alu 1 300 -12 502 55 11 132 chrX 91484320 91484361 -85489779 - MADE1 DNA Mariner -35 45 1 3775 133 13 18 chrX 91484361 91484938 -85489202 - L1 LINE L1 -1684 4462 3887 1187 153 0 0 chrX 91484939 91485116 -85489024 - AluSg/x SINE Alu -2 310 134 2373 58 41 0 chrX 91485116 91485407 -85488733 - AluY SINE Alu -4 307 5 5847 191 21 9 chrX 91485418 91486746 -85487394 - L1 LINE L1 -2259 3887 2544 412 192 0 0 chrX 91486748 91486826 -85487314 + AluJ/FRAM SINE Alu 232 309 -3 2329 120 23 18 chrX 91486826 91487225 -85486915 + L1MA4A LINE L1 5777 6177 -126 2268 104 0 3 chrX 91487228 91487537 -85486603 + AluSg SINE Alu 2 309 -1 617 256 62 35 chrX 91487547 91487836 -85486304 + L1ME4a LINE L1 5522 5818 -303 2332 79 0 7 chrX 91487848 91488188 -85485952 + AluSg SINE Alu 1 338 0 539 344 58 18 chrX 91488199 91488423 -85485717 + MIR SINE MIR 1 233 -29 2449 80 0 0 chrX 91488451 91488750 -85485390 + AluSq SINE Alu 5 303 -10 568 287 104 0 chrX 91488761 91488925 -85485215 - MIR SINE MIR -81 181 1 467 267 34 11 chrX 91488965 91489141 -85484999 + L1ME4a LINE L1 5839 6018 -103 191 225 25 0 chrX 91489143 91489183 -85484957 + MIR SINE MIR 206 246 -16 2280 87 0 19 chrX 91489308 91489620 -85484520 - AluSg SINE Alu -4 306 1 1418 267 116 38 chrX 91489694 91489909 -85484231 - L1MEd LINE L1 -5018 1101 904 1038 144 10 59 chrX 91489909 91489985 -85484155 + L1PB4 LINE L1 5962 6040 -116 2333 90 0 3 chrX 91489985 91490284 -85483856 + AluSq SINE Alu 1 298 -15 1038 144 10 59 chrX 91490284 91490409 -85483731 + L1PB4 LINE L1 6040 6153 -3 1418 267 116 38 chrX 91490409 91490987 -85483153 - L1MEd LINE L1 -5215 904 246 701 155 0 0 chrX 91490991 91491094 -85483046 + U6 snRNA snRNA 1 103 -4 13953 192 21 22 chrX 91491123 91491623 -85482517 + L1PB1 LINE L1 6 505 -6362 2336 74 0 0 chrX 91491623 91491939 -85482201 + AluSx SINE Alu 1 316 0 13953 192 21 22 chrX 91491939 91493066 -85481074 + L1PB1 LINE L1 505 1631 -5236 2432 87 0 3 chrX 91493066 91493378 -85480762 + AluY SINE Alu 1 311 0 13953 192 21 22 chrX 91493378 91493402 -85480738 + L1PB1 LINE L1 1631 1654 -5213 2422 74 3 0 chrX 91493402 91493698 -85480442 + AluSp SINE Alu 3 299 -14 13953 192 21 22 chrX 91493698 91494322 -85479818 + L1PB1 LINE L1 1654 2277 -4590 2343 92 3 0 chrX 91494322 91494617 -85479523 - AluSp SINE Alu -17 296 1 13953 192 21 22 chrX 91494617 91494832 -85479308 + L1PB1 LINE L1 2277 2491 -4376 2267 103 16 7 chrX 91494832 91495142 -85478998 + AluSq SINE Alu 1 313 0 13953 192 21 22 chrX 91495142 91495427 -85478713 + L1PB1 LINE L1 2491 2775 -4092 2358 94 0 0 chrX 91495427 91495725 -85478415 - AluSg SINE Alu -12 298 1 13953 192 21 22 chrX 91495725 91496917 -85477223 + L1PB1 LINE L1 2775 3966 -2901 2327 80 0 10 chrX 91496917 91497216 -85476924 + AluSq SINE Alu 1 296 -17 2319 82 3 25 chrX 91497217 91497532 -85476608 + AluSg SINE Alu 1 308 -2 13953 192 21 22 chrX 91497532 91497799 -85476341 + L1PB1 LINE L1 3966 4232 -2635 2179 100 10 3 chrX 91497799 91498100 -85476040 + AluSp SINE Alu 1 303 -10 13953 192 21 22 chrX 91498100 91500453 -85473687 + L1PB1 LINE L1 4232 6865 -2 766 153 28 45 chrX 91500567 91500743 -85473397 - L1MEd LINE L1 -5940 179 7 210 278 133 11 chrX 91501065 91501155 -85472985 - L2 LINE L2 -468 2846 2746 2393 79 0 10 chrX 91501332 91501637 -85472503 - AluY SINE Alu -8 303 2 252 328 103 9 chrX 91501951 91502067 -85472073 + L2 LINE L2 2731 2857 -457 208 0 0 0 chrX 91502147 91502170 -85471970 + (TTTA)n Simple_repeat Simple_repeat 2 152 0 2056 106 7 7 chrX 91502170 91502452 -85471688 - AluSx SINE Alu -30 282 1 1965 133 6 25 chrX 91502462 91502779 -85471361 - AluSx SINE Alu -1 311 1 957 109 0 0 chrX 91503087 91503224 -85470916 + AluSg/x SINE Alu 170 306 -4 502 212 0 26 chrX 91503244 91503357 -85470783 + FLAM_C SINE Alu 1 110 -33 209 210 16 0 chrX 91503631 91503693 -85470447 + CT-rich Low_complexity Low_complexity 2 64 0 2649 34 0 0 chrX 91503922 91504215 -85469925 + AluY SINE Alu 1 293 -18 2255 103 0 3 chrX 91504319 91504619 -85469521 + AluSg SINE Alu 1 299 -11 1135 116 15 135 chrX 91504815 91504965 -85469175 + MER96B DNA MER1_type? 190 298 -119 2444 74 0 7 chrX 91504965 91505274 -85468866 + AluY SINE Alu 1 307 -4 1135 116 15 135 chrX 91505274 91505382 -85468758 + MER96B DNA MER1_type? 298 417 0 2010 99 0 0 chrX 91505568 91505820 -85468320 + AluSx SINE Alu 45 296 -16 1274 105 0 0 chrX 91505874 91506036 -85468104 + AluSg/x SINE Alu 131 292 -18 247 194 29 7 chrX 91506036 91506175 -85467965 + (TA)n Simple_repeat Simple_repeat 1 142 0 1353 83 0 0 chrX 91506794 91506962 -85467178 + AluSp SINE Alu 137 304 -9 21 57 0 0 chrX 91507150 91507185 -85466955 + AT_rich Low_complexity Low_complexity 1 35 0 301 242 142 17 chrX 91507345 91507465 -85466675 - L1MC4a LINE L1 -1844 5964 5830 674 24 0 0 chrX 91507469 91507551 -85466589 + MLT2A1 LTR ERVL 1 82 -362 350 132 0 0 chrX 91507630 91507683 -85466457 + Alu SINE Alu 243 295 -7 2254 89 25 0 chrX 91508443 91508724 -85465416 + AluSc SINE Alu 5 292 -17 28 48 0 0 chrX 91508725 91508767 -85465373 + AT_rich Low_complexity Low_complexity 1 42 0 2021 148 7 3 chrX 91508815 91509112 -85465028 - AluJb SINE Alu -14 298 1 975 234 58 103 chrX 91509268 91509450 -85464690 + L2 LINE L2 2681 2870 -443 2134 98 56 3 chrX 91509450 91509737 -85464403 - AluSx SINE Alu -10 302 1 975 234 58 103 chrX 91509737 91509908 -85464232 + L2 LINE L2 2870 3047 -266 2197 91 0 14 chrX 91509908 91510217 -85463923 - AluY SINE Alu 0 306 2 975 234 58 103 chrX 91510217 91510507 -85463633 + L2 LINE L2 3047 3298 -15 2577 63 0 0 chrX 91510541 91510840 -85463300 + AluSg SINE Alu 1 299 -11 531 228 55 8 chrX 91512428 91512555 -85461585 - MIR SINE MIR -72 190 58 2048 99 51 3 chrX 91512849 91513142 -85460998 - AluSx SINE Alu -4 308 2 207 0 0 0 chrX 91515989 91516012 -85458128 + (T)n Simple_repeat Simple_repeat 1 23 0 2263 104 20 0 chrX 91516037 91516334 -85457806 - AluSx SINE Alu -9 303 1 424 260 50 72 chrX 91516472 91516592 -85457548 + MER5B DNA MER1_type 1 117 -61 2156 121 0 0 chrX 91516592 91516881 -85457259 - AluSg SINE Alu -21 289 1 424 260 50 72 chrX 91516881 91516941 -85457199 + MER5B DNA MER1_type 117 177 -1 2530 60 0 0 chrX 91517469 91517769 -85456371 + AluY SINE Alu 1 300 -11 2208 124 0 13 chrX 91518070 91518204 -85455936 + AluSx SINE Alu 1 135 -177 2343 103 0 0 chrX 91518204 91518504 -85455636 + AluSx SINE Alu 1 300 -12 2208 124 0 13 chrX 91518504 91518683 -85455457 + AluSx SINE Alu 135 310 -2 271 328 67 25 chrX 91519115 91519234 -85454906 + L2 LINE L2 3149 3272 0 215 333 71 32 chrX 91519232 91519358 -85454782 + L2 LINE L2 3178 3308 -5 * 220 263 0 18 chrX 91519819 91519876 -85454264 + CT-rich Low_complexity Low_complexity 4 59 0 2188 97 7 0 chrX 91520584 91520903 -85453237 + AluSx SINE Alu 1 321 0 569 247 193 40 chrX 91520992 91521288 -85452852 - MER102b DNA MER1_type 0 341 1 239 327 18 18 chrX 91523537 91523650 -85450490 + L2 LINE L2 3197 3309 -4 2512 79 0 0 chrX 91524443 91524747 -85449393 + AluSx SINE Alu 1 304 -8 501 204 19 0 chrX 91525467 91525624 -85448516 + (TA)n Simple_repeat Simple_repeat 1 160 0 446 300 6 50 chrX 91526495 91526545 -85447595 + MER5B DNA MER1_type 1 52 -126 1859 127 7 18 chrX 91526545 91526828 -85447312 + AluSx SINE Alu 27 306 -6 446 300 6 50 chrX 91526828 91526957 -85447183 + MER5B DNA MER1_type 52 172 -6 197 227 0 0 chrX 91526998 91527042 -85447098 + MIR SINE MIR 111 154 -108 2113 93 66 3 chrX 91527220 91527509 -85446631 + AluSg SINE Alu 1 307 -3 400 300 122 33 chrX 91527895 91528075 -85446065 - MER91A DNA MER1_type 0 196 1 2251 76 45 0 chrX 91529026 91529316 -85444824 + AluSg SINE Alu 1 303 -7 614 219 0 0 chrX 91529475 91529641 -85444499 - FLAM_A SINE Alu 0 167 2 2235 131 0 0 chrX 91529714 91530027 -85444113 + AluSq SINE Alu 1 313 0 701 213 27 77 chrX 91530260 91530335 -85443805 + MER97c DNA MER1_type? 6 83 -1007 2178 108 0 14 chrX 91530335 91530631 -85443509 - AluSg SINE Alu -18 292 1 701 213 27 77 chrX 91530631 91530738 -85443402 + MER97c DNA MER1_type? 83 179 -911 2071 118 51 0 chrX 91531592 91531888 -85442252 + AluSx SINE Alu 1 311 -1 456 134 317 14 chrX 91531888 91532030 -85442110 - L1ME3 LINE L1 -8 6154 5970 2307 120 0 0 chrX 91532549 91532858 -85441282 + AluSx SINE Alu 1 309 -3 2276 85 3 0 chrX 91532942 91533274 -85440866 + AluSq SINE Alu 1 333 0 239 306 72 9 chrX 91533470 91533581 -85440559 - L2 LINE L2 -6 3266 3149 874 234 89 0 chrX 91533607 91533821 -85440319 + MIR SINE MIR 6 238 -24 893 222 42 34 chrX 91534020 91534259 -85439881 + MIR SINE MIR 22 262 0 296 277 0 0 chrX 91534276 91534359 -85439781 + MIR SINE MIR 168 250 -12 466 231 24 88 chrX 91534835 91535046 -85439094 - MIR SINE MIR -46 216 20 339 229 17 34 chrX 91535363 91535542 -85438598 + CT-rich Low_complexity Low_complexity 3 178 0 205 329 49 37 chrX 91536271 91536353 -85437787 - L2 LINE L2 -35 3237 3155 24 0 0 0 chrX 91536378 91536402 -85437738 + AT_rich Low_complexity Low_complexity 1 24 0 363 339 53 44 chrX 91537495 91537855 -85436285 + L1ME4a LINE L1 4877 5239 -907 1274 279 61 75 chrX 91537881 91538041 -85436099 + L1ME4a LINE L1 5267 5428 -693 2409 52 7 3 chrX 91538041 91538328 -85435812 - AluSg SINE Alu -18 292 5 1274 279 61 75 chrX 91538328 91538389 -85435751 + L1ME4a LINE L1 5428 5488 -633 2211 95 7 0 chrX 91538389 91538699 -85435441 + AluSx SINE Alu 1 312 0 1274 279 61 75 chrX 91538699 91539333 -85434807 + L1ME4a LINE L1 5488 6118 -3 2313 95 0 10 chrX 91539357 91539662 -85434478 + AluSx SINE Alu 11 312 0 2412 80 6 6 chrX 91541934 91542247 -85431893 + AluSq SINE Alu 1 313 0 2388 103 0 0 chrX 91543671 91543971 -85430169 - AluSx SINE Alu -12 300 1 342 45 0 0 chrX 91544108 91544152 -85429988 + (CA)n Simple_repeat Simple_repeat 2 45 0 2190 78 65 3 chrX 91544481 91544774 -85429366 + AluSq SINE Alu 3 313 0 256 179 410 0 chrX 91545043 91545138 -85429002 - MIR SINE MIR -50 212 79 1967 155 0 3 chrX 91545705 91545995 -85428145 - AluJb SINE Alu -23 289 1 2032 102 40 16 chrX 91546318 91546621 -85427519 + AluSp SINE Alu 1 310 -3 458 249 60 34 chrX 91546621 91546854 -85427286 - L1ME3 LINE L1 -233 5929 5691 2426 89 0 13 chrX 91547335 91547649 -85426491 + AluSg SINE Alu 1 310 0 878 195 0 0 chrX 91547899 91548079 -85426061 - AluSg/x SINE Alu 0 313 134 381 93 18 0 chrX 91548079 91548142 -85425998 - Alu SINE Alu -253 49 1 693 172 0 9 chrX 91548471 91548616 -85425524 + FLAM_A SINE Alu 1 144 0 324 225 275 0 chrX 91548616 91548794 -85425346 - L1ME4a LINE L1 -26 6095 5869 261 57 0 0 chrX 91548795 91548830 -85425310 + (TATG)n Simple_repeat Simple_repeat 2 36 0 325 259 46 52 chrX 91548894 91549068 -85425072 - L1ME4a LINE L1 -451 5670 5498 2438 63 3 38 chrX 91549907 91550224 -85423916 + AluSp SINE Alu 5 310 -3 447 171 11 0 chrX 91550581 91550669 -85423471 - MIR SINE MIR -21 241 153 226 269 45 0 chrX 91550676 91550743 -85423397 + GA-rich Low_complexity Low_complexity 5 74 0 252 330 0 10 chrX 91550824 91550921 -85423219 + GA-rich Low_complexity Low_complexity 3 98 0 1028 113 13 0 chrX 91552754 91552778 -85421362 - L1PA8A LINE L1 0 6131 6109 189 74 0 0 chrX 91552778 91552805 -85421335 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1028 113 13 0 chrX 91552805 91552931 -85421209 - L1PA8A LINE L1 -22 6109 5979 2135 135 0 0 chrX 91552935 91553239 -85420901 - AluJb SINE Alu 0 312 1 2515 65 0 0 chrX 91553458 91553751 -85420389 - AluY SINE Alu -16 295 3 1194 318 50 23 chrX 91553949 91554549 -85419591 + L3 LINE CR1 525 1140 -437 1416 124 66 27 chrX 91554590 91554847 -85419293 + L1MA9 LINE L1 6024 6290 -22 909 231 23 31 chrX 91555301 91555561 -85418579 + MIR SINE MIR 4 261 -1 674 269 33 14 chrX 91555580 91555792 -85418348 + MIR SINE MIR 2 217 -45 303 257 29 0 chrX 91556055 91556125 -85418015 + L2 LINE L2 3237 3308 -5 3586 86 62 20 chrX 91558244 91558428 -85415712 + L1MA1 LINE L1 5600 5775 -527 2250 88 29 10 chrX 91558428 91558734 -85415406 + AluSx SINE Alu 1 312 0 3586 86 62 20 chrX 91558734 91559109 -85415031 + L1MA1 LINE L1 5775 6183 -119 2383 132 146 2 chrX 91559114 91559593 -85414547 + L1MC3 LINE L1 7208 7755 -30 2102 109 36 10 chrX 91559635 91559939 -85414201 + AluSq SINE Alu 1 312 -1 691 99 36 18 chrX 91560025 91560136 -85414004 - AluJb SINE Alu -177 135 23 377 83 48 0 chrX 91560294 91560378 -85413762 + (TA)n Simple_repeat Simple_repeat 1 88 0 2179 97 13 20 chrX 91560378 91560676 -85413464 - AluSg SINE Alu -14 296 1 1278 201 56 7 chrX 91561899 91562183 -85411957 - AluJo SINE Alu -14 298 1 2081 111 17 3 chrX 91562262 91562560 -85411580 - AluSq SINE Alu -11 302 1 2058 140 0 3 chrX 91562748 91563041 -85411099 - AluSx SINE Alu -20 292 1 2130 109 14 0 chrX 91563041 91563324 -85410816 - AluSx SINE Alu -14 298 11 2291 77 18 0 chrX 91564872 91565158 -85408982 + AluSx SINE Alu 1 291 -21 905 265 93 51 chrX 91565242 91566077 -85408063 - L2 LINE L2 -4 3309 2449 243 271 0 0 chrX 91566077 91566136 -85408004 - L2 LINE L2 -717 2597 2539 2036 141 3 0 chrX 91566412 91566723 -85407417 - AluSx SINE Alu 0 312 1 1328 164 191 54 chrX 91567710 91568070 -85406070 + MER31B LTR ERV1 1 425 -41 2393 72 7 3 chrX 91568070 91568360 -85405780 + AluSg SINE Alu 1 291 -19 1328 164 191 54 chrX 91568360 91568407 -85405733 + MER31B LTR ERV1 425 464 -2 2573 70 0 0 chrX 91568605 91568907 -85405233 + AluY SINE Alu 1 302 -9 2404 100 0 3 chrX 91569005 91569316 -85404824 - AluSq SINE Alu -3 310 1 345 267 177 48 chrX 91569816 91570130 -85404010 + L1M4 LINE L1 4255 4609 -1537 2227 120 7 0 chrX 91570146 91570455 -85403685 - AluSx SINE Alu -1 311 1 2426 88 7 0 chrX 91570543 91570850 -85403290 + AluSp SINE Alu 1 309 -4 2142 107 10 0 chrX 91571226 91571515 -85402625 + AluSx SINE Alu 1 292 -20 2263 63 30 27 chrX 91571519 91571820 -85402320 + AluY SINE Alu 1 302 -9 248 250 83 24 chrX 91571822 91571906 -85402234 - MIR SINE MIR -159 103 15 426 219 65 50 chrX 91571920 91572121 -85402019 + L1ME4a LINE L1 5911 6114 -7 180 307 67 0 chrX 91572472 91572547 -85401593 - MIR SINE MIR -35 227 148 400 77 0 0 chrX 91572927 91572979 -85401161 + MER66B LTR ERV1 295 346 -140 391 130 26 0 chrX 91572996 91573073 -85401067 + GA-rich Low_complexity Low_complexity 2 80 0 230 191 0 0 chrX 91574844 91574886 -85399254 + L2 LINE L2 3223 3264 -8 235 193 119 18 chrX 91575059 91575168 -85398972 - L1ME4a LINE L1 0 6121 6002 616 234 193 27 chrX 91575304 91575638 -85398502 - L1MC4a LINE L1 -137 5984 5591 244 190 89 38 chrX 91575675 91575754 -85398386 - L1ME LINE L1 -242 5879 5797 250 240 250 0 chrX 91575793 91575889 -85398251 - L1ME LINE L1 -434 5687 5568 196 329 13 0 chrX 91576241 91576320 -85397820 + L2 LINE L2 2626 2705 -609 2396 71 19 16 chrX 91576992 91577302 -85396838 - AluSq SINE Alu -2 311 1 703 284 92 12 chrX 91579798 91580125 -85394015 - L1ME LINE L1 -385 5736 5384 707 213 163 0 chrX 91580434 91580594 -85393546 - MER5A DNA MER1_type 0 189 4 322 151 34 223 chrX 91581668 91581819 -85392321 + MER5A DNA MER1_type 1 104 -85 1950 128 10 10 chrX 91581819 91582109 -85392031 - AluJo SINE Alu -9 303 14 322 151 34 223 chrX 91582109 91582163 -85391977 + MER5A DNA MER1_type 104 167 -22 1895 115 71 166 chrX 91582622 91583116 -85391024 - MER83 LTR ERV1 -1 447 1 188 189 0 0 chrX 91583476 91583513 -85390627 - MIR SINE MIR -118 144 108 218 268 0 0 chrX 91584380 91584436 -85389704 + L2 LINE L2 3205 3260 -12 776 202 16 16 chrX 91584883 91585066 -85389074 + L1MB7 LINE L1 5993 6175 -9 1661 163 173 18 chrX 91585178 91585565 -85388575 + MER31B LTR ERV1 1 447 -19 2314 96 10 3 chrX 91585668 91585970 -85388170 + AluSg SINE Alu 1 304 -6 338 328 66 19 chrX 91585984 91586243 -85387897 - L2 LINE L2 -40 3273 3003 394 359 35 41 chrX 91586379 91586503 -85387637 - L2 LINE L2 -494 2820 2697 2481 79 0 16 chrX 91586503 91586821 -85387319 + AluSp SINE Alu 1 313 0 394 359 35 41 chrX 91586821 91587041 -85387099 - L2 LINE L2 -617 2697 2478 1020 146 353 248 chrX 91587071 91587417 -85386723 - MLT1A1 LTR MaLR -4 361 53 3173 148 44 86 chrX 91587417 91587579 -85386561 - LTR8 LTR ERV1 0 691 524 2360 74 0 3 chrX 91587579 91587904 -85386236 - AluSx SINE Alu 0 324 1 3173 148 44 86 chrX 91587904 91588461 -85385679 - LTR8 LTR ERV1 -167 524 1 1020 146 353 248 chrX 91588461 91588510 -85385630 - MLT1A1 LTR MaLR -312 53 52 2211 102 0 0 chrX 91588510 91588793 -85385347 - AluSx SINE Alu -25 287 5 1020 146 353 248 chrX 91588793 91588851 -85385289 - MLT1A1 LTR MaLR -313 52 1 * 4137 180 58 50 chrX 91588851 91588931 -85385209 + MER21B LTR ERV1 26 104 -759 2347 95 3 0 chrX 91588931 91589235 -85384905 + AluSq SINE Alu 9 313 0 4137 180 58 50 chrX 91589235 91589440 -85384700 + MER21B LTR ERV1 104 306 -557 2280 113 3 0 chrX 91589440 91589750 -85384390 - AluSp SINE Alu -2 311 1 4137 180 58 50 chrX 91589750 91590283 -85383857 + MER21B LTR ERV1 306 852 -11 1516 299 38 66 chrX 91590302 91590981 -85383159 - L2 LINE L2 -832 2482 1785 2500 76 0 3 chrX 91590981 91591282 -85382858 - AluSq SINE Alu -13 300 1 1516 299 38 66 chrX 91591282 91591407 -85382733 - L2 LINE L2 -1529 1785 1658 1926 162 0 7 chrX 91591407 91591710 -85382430 - AluJo SINE Alu -11 301 1 1516 299 38 66 chrX 91591710 91592207 -85381933 - L2 LINE L2 -1656 1658 1217 699 238 56 61 chrX 91592204 91592435 -85381705 - MIR SINE MIR -26 236 7 * 2013 239 40 16 chrX 91592798 91592821 -85381319 + L1ME2 LINE L1 5594 5615 -549 2987 104 19 53 chrX 91592821 91592972 -85381168 - MSTB2 LTR MaLR 0 457 302 2228 112 0 10 chrX 91592972 91593268 -85380872 - AluSx SINE Alu -19 293 1 2987 104 19 53 chrX 91593268 91593589 -85380551 - MSTB2 LTR MaLR -155 302 1 2013 239 40 16 chrX 91593589 91594122 -85380018 + L1ME2 LINE L1 5615 6163 -1 1895 132 61 7 chrX 91594451 91594747 -85379393 - AluJb SINE Alu 0 312 1 547 246 22 49 chrX 91594781 91594920 -85379220 + MIR SINE MIR 35 169 -93 2450 92 0 0 chrX 91594920 91595223 -85378917 - AluSq SINE Alu -10 303 1 547 246 22 49 chrX 91595223 91595266 -85378874 + MIR SINE MIR 169 212 -50 279 254 0 0 chrX 91596319 91596382 -85377758 - L2 LINE L2 -1 3312 3250 2494 75 0 0 chrX 91597135 91597430 -85376710 - AluY SINE Alu -16 295 1 2193 108 3 0 chrX 91597968 91598255 -85375885 + AluSg SINE Alu 1 288 -22 372 164 0 0 chrX 91598259 91598326 -85375814 + (TA)n Simple_repeat Simple_repeat 2 68 0 267 229 0 62 chrX 91598329 91598425 -85375715 + L1MC4 LINE L1 6614 6703 -1339 225 260 14 0 chrX 91598401 91598474 -85375666 + L1MCa LINE L1 1995 2068 -4358 * 278 237 11 0 chrX 91598498 91598591 -85375549 - L1MCa LINE L1 -1340 6982 2007 230 263 0 0 chrX 91598563 91598639 -85375501 + L1MC3 LINE L1 6571 6646 -1139 * 240 250 28 0 chrX 91598639 91598711 -85375429 + L1MC3 LINE L1 6573 6646 -1139 * 241 318 23 0 chrX 91598663 91598751 -85375389 - L1MC4 LINE L1 -1339 6703 6614 203 242 30 0 chrX 91598751 91598817 -85375323 + (CATA)n Simple_repeat Simple_repeat 4 71 0 * 690 229 0 0 chrX 91598803 91598982 -85375158 + (TA)n Simple_repeat Simple_repeat 2 180 0 253 283 0 0 chrX 91598982 91599042 -85375098 + (CATA)n Simple_repeat Simple_repeat 1 60 0 399 196 32 122 chrX 91599083 91599272 -85374868 + MIR SINE MIR 91 262 0 1860 162 3 3 chrX 91599535 91599831 -85374309 - AluSx SINE Alu -14 298 3 2108 105 24 3 chrX 91599839 91600133 -85374007 - AluSg SINE Alu -10 300 1 30304 38 1 9 chrX 91600191 91603870 -85370270 - L1PA4 LINE L1 0 6155 2565 2235 81 0 24 chrX 91603870 91604165 -85369975 + AluY SINE Alu 1 288 -23 30304 38 1 9 chrX 91604165 91606710 -85367430 - L1PA4 LINE L1 -3590 2565 1 581 249 53 49 chrX 91606714 91606959 -85367181 - MIR SINE MIR -7 255 10 231 204 0 0 chrX 91607143 91607197 -85366943 + (CA)n Simple_repeat Simple_repeat 2 55 0 708 216 6 62 chrX 91607395 91607571 -85366569 + MER5A DNA MER1_type 2 167 -22 1234 172 10 159 chrX 91608378 91608438 -85365702 + MLT1A1 LTR MaLR 1 68 -297 2450 82 3 0 chrX 91608438 91608742 -85365398 + AluY SINE Alu 1 305 -6 1234 172 10 159 chrX 91608742 91609083 -85365057 + MLT1A1 LTR MaLR 68 342 -23 273 192 0 0 chrX 91609797 91609849 -85364291 + MLT1A1 LTR MaLR 323 374 0 * 1655 196 123 45 chrX 91609839 91610262 -85363878 + MER31B LTR ERV1 2 457 -9 1388 133 9 21 chrX 91610272 91610505 -85363635 - L1MA9 LINE L1 -6 6306 6077 2460 202 94 28 chrX 91612094 91612261 -85361879 - MLT1F1 LTR MaLR -2 565 410 2277 105 0 0 chrX 91612261 91612555 -85361585 + AluSg SINE Alu 1 294 -16 2460 202 94 28 chrX 91612555 91612917 -85361223 - MLT1F1 LTR MaLR -157 410 1 340 247 45 22 chrX 91612946 91613035 -85361105 - L2 LINE L2 -4 3268 3178 6620 82 5 15 chrX 91613286 91614166 -85359974 - L1MA2 LINE L1 -2 6302 5432 2268 109 0 10 chrX 91614168 91614481 -85359659 - AluSg SINE Alu 0 310 1 2056 120 30 0 chrX 91614490 91614791 -85359349 - AluSx SINE Alu 0 312 3 14892 144 83 7 chrX 91614804 91617247 -85356893 - L1M1 LINE L1 -4925 2640 11 2958 165 31 20 chrX 91617411 91617982 -85356158 - LTR24B LTR ERV1 -7 569 1 2241 138 0 0 chrX 91618131 91618443 -85355697 - AluSx SINE Alu 0 312 1 207 0 0 0 chrX 91618455 91618478 -85355662 + (TTA)n Simple_repeat Simple_repeat 2 24 0 458 294 31 19 chrX 91618544 91618704 -85355436 - MIR SINE MIR -55 207 46 438 281 170 7 chrX 91618967 91619120 -85355020 - MER5A DNA MER1_type -3 186 9 1070 207 9 63 chrX 91619746 91619854 -85354286 + MER63A DNA MER1_type 1 92 -1596 2482 60 0 35 chrX 91619854 91620173 -85353967 - AluY SINE Alu -3 308 1 1070 207 9 63 chrX 91620173 91620286 -85353854 + MER63A DNA MER1_type 92 210 0 686 210 65 0 chrX 91620312 91620450 -85353690 - MLT1A1 LTR MaLR 0 365 219 443 89 0 0 chrX 91620454 91620510 -85353630 + Alu SINE Alu 237 292 -19 425 324 139 15 chrX 91620513 91620965 -85353175 + L2 LINE L2 2708 3215 -98 372 137 0 0 chrX 91620966 91621015 -85353125 + MER6B DNA MER2_type 64 112 -164 3007 120 17 37 chrX 91621015 91621129 -85353011 + MER6B DNA MER2_type 1 4294967019 -1142 1877 156 28 0 chrX 91621129 91621417 -85352723 - AluJb SINE Alu -16 296 1 3007 120 17 37 chrX 91621417 91621897 -85352243 + MER6B DNA MER2_type -278 210 0 237 266 203 0 chrX 91621898 91621977 -85352163 + L2 LINE L2 3178 3272 0 1410 121 5 0 chrX 91622280 91622478 -85351662 - AluSg/x SINE Alu -13 299 101 526 242 36 48 chrX 91622513 91622678 -85351462 + MIR SINE MIR 84 246 -16 312 125 0 0 chrX 91623330 91623394 -85350746 + (CAT)n Simple_repeat Simple_repeat 3 66 0 2096 116 0 67 chrX 91623758 91624087 -85350053 + AluSx SINE Alu 1 307 -5 2148 112 24 0 chrX 91624087 91624381 -85349759 + AluSx SINE Alu 1 301 -11 183 167 0 0 chrX 91626039 91626069 -85348071 + MIR SINE MIR 227 256 -6 5742 179 63 37 chrX 91626092 91626250 -85347890 + L1MD2 LINE L1 4515 4668 -1691 2280 81 3 0 chrX 91626250 91626561 -85347579 + AluSx SINE Alu 1 312 0 5742 179 63 37 chrX 91626561 91628224 -85345916 + L1MD2 LINE L1 4668 6359 0 398 219 9 57 chrX 91628430 91628535 -85345605 + L2 LINE L2 3214 3313 0 2441 83 0 0 chrX 91628796 91629096 -85345044 - AluSx SINE Alu -12 300 1 1923 155 14 7 chrX 91629676 91629972 -85344168 - AluJb SINE Alu -14 298 1 2306 108 0 13 chrX 91631259 91631575 -85342565 - AluSx SINE Alu 0 312 1 291 54 0 0 chrX 91631772 91631809 -85342331 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 3483 123 41 39 chrX 91631826 91632124 -85342016 - L1MA8 LINE L1 -423 5868 5572 2412 92 0 7 chrX 91632124 91632430 -85341710 + AluSx SINE Alu 1 304 -8 3483 123 41 39 chrX 91632430 91632776 -85341364 - L1MA8 LINE L1 -719 5572 5224 2486 90 0 0 chrX 91632811 91633121 -85341019 + AluSg SINE Alu 1 310 0 357 278 56 40 chrX 91633342 91633468 -85340672 + L2 LINE L2 3145 3272 0 2338 97 0 3 chrX 91635052 91635352 -85338788 - AluSx SINE Alu -12 300 2 252 326 0 0 chrX 91635471 91635560 -85338580 - MIR SINE MIR -4 258 170 25 0 0 0 chrX 91635612 91635637 -85338503 + AT_rich Low_complexity Low_complexity 1 25 0 569 165 83 0 chrX 91635673 91635794 -85338346 - L1MA7 LINE L1 -5 6286 6156 560 126 0 35 chrX 91635835 91635922 -85338218 - HY4 scRNA scRNA -9 84 1 2438 151 34 11 chrX 91635922 91636360 -85337780 - L1MA8 LINE L1 -251 6040 5593 2041 107 0 31 chrX 91636488 91636799 -85337341 - AluSq SINE Alu 0 302 1 1894 109 68 0 chrX 91636843 91637137 -85337003 + AluSx SINE Alu 1 312 0 183 129 0 0 chrX 91637229 91637260 -85336880 + (TA)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chrX 91637607 91637629 -85336511 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chrX 91638274 91638323 -85335817 + GC_rich Low_complexity Low_complexity 1 49 0 2376 72 0 3 chrX 91638495 91638787 -85335353 + AluSc SINE Alu 1 291 -18 2627 42 0 6 chrX 91638866 91639179 -85334961 + AluY SINE Alu 1 311 0 1368 81 12 0 chrX 91639198 91639371 -85334769 + AluSq SINE Alu 132 306 -7 2199 91 7 10 chrX 91640725 91641022 -85333118 + AluSx SINE Alu 1 296 -16 533 165 28 0 chrX 91641023 91641132 -85333008 + GA-rich Low_complexity Low_complexity 5 116 0 197 204 45 0 chrX 91641212 91641256 -85332884 - L2 LINE L2 0 3313 3268 385 246 64 0 chrX 91641745 91641855 -85332285 - MIR SINE MIR -2 260 144 2210 128 17 48 chrX 91641903 91642570 -85331570 + L1MA4 LINE L1 4952 5608 -692 811 121 17 0 chrX 91642570 91642686 -85331454 + FLAM_C SINE Alu 2 119 -24 360 0 0 0 chrX 91642686 91642726 -85331414 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 4403 110 30 39 chrX 91642727 91642923 -85331217 + L1MA4 LINE L1 5596 5792 -508 2138 72 0 129 chrX 91642923 91643272 -85330868 + AluSc SINE Alu 1 304 -5 4403 110 30 39 chrX 91643272 91643786 -85330354 + L1MA4 LINE L1 5792 6299 -1 21 95 0 0 chrX 91643884 91643947 -85330193 + AT_rich Low_complexity Low_complexity 1 63 0 465 270 0 86 chrX 91644112 91644286 -85329854 - MER5B DNA MER1_type -19 159 1 1577 185 14 20 chrX 91644715 91645007 -85329133 + AluJb SINE Alu 1 290 -22 32 43 0 0 chrX 91645096 91645142 -85328998 + AT_rich Low_complexity Low_complexity 1 46 0 223 257 0 71 chrX 91645142 91645212 -85328928 - MIR SINE MIR -150 112 48 3855 166 9 15 chrX 91645276 91645386 -85328754 - L1MB4 LINE L1 -165 6015 5906 2215 126 42 9 chrX 91645386 91645719 -85328421 - MER2 DNA MER2_type 0 344 1 3855 166 9 15 chrX 91645719 91646290 -85327850 - L1MB4 LINE L1 -274 5906 5338 282 114 0 0 chrX 91646292 91646336 -85327804 + L1M LINE L1 5345 5388 -792 533 171 50 69 chrX 91646361 91646572 -85327568 - L1MB4 LINE L1 -826 5340 4251 1020 111 64 58 chrX 91646572 91646743 -85327397 + AluSq SINE Alu 1 172 -141 1208 159 0 0 chrX 91646743 91646950 -85327190 - L1M4 LINE L1 -959 5187 4981 8021 167 21 51 chrX 91646957 91647693 -85326447 - L1 LINE L1 -992 5336 4580 2085 124 10 0 chrX 91647693 91647983 -85326157 - AluSg SINE Alu -17 293 1 8021 167 21 51 chrX 91647983 91648080 -85326060 - L1 LINE L1 -1748 4580 4482 2359 75 7 0 chrX 91648080 91648372 -85325768 - AluY SINE Alu -16 295 2 8021 167 21 51 chrX 91648372 91649169 -85324971 - L1 LINE L1 -1846 4482 3756 2312 92 7 10 chrX 91649169 91649474 -85324666 - AluY SINE Alu -7 304 1 8021 167 21 51 chrX 91649474 91649573 -85324567 - L1 LINE L1 -2572 3756 3656 2184 130 3 0 chrX 91649573 91649881 -85324259 - AluSx SINE Alu -3 309 1 5114 215 59 22 chrX 91649881 91650355 -85323785 - L1 LINE L1 -4250 1078 623 2103 138 3 0 chrX 91650355 91650659 -85323481 - AluSx SINE Alu -7 305 1 5114 215 59 22 chrX 91650659 91652053 -85322087 - L1 LINE L1 -4705 623 14 1017 190 0 80 chrX 91652173 91652285 -85321855 + MER3 DNA MER1_type 2 89 -120 2138 135 0 0 chrX 91652285 91652596 -85321544 + AluSx SINE Alu 1 311 -1 1017 190 0 80 chrX 91652596 91652709 -85321431 + MER3 DNA MER1_type 89 209 0 2145 108 4 0 chrX 91652895 91653193 -85320947 + AluSg SINE Alu 1 299 0 429 272 28 22 chrX 91653193 91653373 -85320767 - L1MB4 LINE L1 -2178 3968 3788 212 51 51 102 chrX 91653396 91653408 -85320732 + A-rich Low_complexity Low_complexity 3 14 -44 3287 121 4 58 chrX 91653408 91653543 -85320597 + L1MA5 LINE L1 5773 5914 -386 2173 106 31 0 chrX 91653543 91653836 -85320304 + AluSq SINE Alu 1 302 -11 3287 121 4 58 chrX 91653836 91654254 -85319886 + L1MA5 LINE L1 5914 6296 -4 46 0 0 0 chrX 91654254 91654300 -85319840 + AT_rich Low_complexity Low_complexity 1 46 0 2147 94 7 20 chrX 91654781 91655079 -85319061 + AluSx SINE Alu 1 294 -18 2316 90 7 3 chrX 91656215 91656515 -85317625 + AluSg SINE Alu 1 301 -9 2056 123 0 7 chrX 91656572 91656884 -85317256 - AluSx SINE Alu 0 310 1 2796 179 62 50 chrX 91656899 91657301 -85316839 - L1MC/D LINE L1 -467 5775 5379 2327 97 0 7 chrX 91657301 91657611 -85316529 - AluSg SINE Alu -2 308 1 2796 179 62 50 chrX 91657611 91657936 -85316204 - L1MC/D LINE L1 -863 5379 5059 2443 82 0 0 chrX 91657936 91658229 -85315911 - AluSq SINE Alu -18 295 3 2796 179 62 50 chrX 91658229 91658624 -85315516 - L1MC/D LINE L1 -1183 5059 4670 2407 81 0 0 chrX 91658624 91658920 -85315220 + AluSp SINE Alu 1 296 -17 2204 83 6 42 chrX 91658922 91659269 -85314871 + AluY SINE Alu 1 311 0 2796 179 62 50 chrX 91659269 91659282 -85314858 - L1MC/D LINE L1 -1572 4670 4659 2203 98 14 0 chrX 91659282 91659567 -85314573 - AluSx SINE Alu -22 290 2 2796 179 62 50 chrX 91659567 91659668 -85314472 - L1MC/D LINE L1 -1583 4659 4506 309 295 0 0 chrX 91659668 91659746 -85314394 - L2 LINE L2 -566 2748 2671 1526 196 4 4 chrX 91659750 91660030 -85314110 - AluJo SINE Alu -10 302 23 708 143 0 0 chrX 91660104 91660209 -85313931 + AluY SINE Alu 207 311 0 2356 90 3 0 chrX 91660788 91661087 -85313053 + AluSg SINE Alu 1 300 -10 2412 90 3 0 chrX 91661182 91661481 -85312659 + AluSq SINE Alu 1 300 -13 606 233 15 15 chrX 91661709 91661842 -85312298 + L1M4 LINE L1 2 134 -6408 1294 308 98 33 chrX 91661855 91662589 -85311551 + L1M4 LINE L1 3 784 -5758 235 254 0 0 chrX 91662612 91662667 -85311473 + T-rich Low_complexity Low_complexity 1 55 0 6858 110 30 38 chrX 91662672 91663532 -85310608 - L1MA3 LINE L1 -11 6294 5429 2149 106 3 3 chrX 91663532 91664007 -85310133 - AluSx SINE Alu 0 312 1 6858 110 30 38 chrX 91664007 91664891 -85309249 - L1MA3 LINE L1 -876 5429 4562 2267 121 0 3 chrX 91664891 91665197 -85308943 - AluSq SINE Alu -8 305 1 6858 110 30 38 chrX 91665197 91665235 -85308905 - L1MA3 LINE L1 -1743 4562 4525 440 258 41 4 chrX 91765420 91765526 -85208614 - MIR SINE MIR -84 124 19 2158 105 4 0 chrX 91765541 91765818 -85208322 - AluSx SINE Alu -14 298 21 215 298 125 19 chrX 91766399 91766503 -85207637 + MIR SINE MIR 13 127 -135 2337 104 0 0 chrX 91767259 91767557 -85206583 - AluSx SINE Alu -14 298 1 733 140 91 0 chrX 91768028 91768171 -85205969 + L1MB4 LINE L1 6023 6178 -2 21 36 0 0 chrX 91768172 91768200 -85205940 + AT_rich Low_complexity Low_complexity 1 28 0 240 333 120 38 chrX 91768645 91768828 -85205312 + MIR SINE MIR 51 248 -14 369 183 0 56 chrX 91768906 91768926 -85205214 - MIR3 SINE MIR -36 172 152 1105 187 38 5 chrX 91768926 91769135 -85205005 - MER20 DNA MER1_type 0 219 4 369 183 0 56 chrX 91769135 91769185 -85204955 - MIR3 SINE MIR -56 152 106 24 0 0 0 chrX 91771328 91771352 -85202788 + AT_rich Low_complexity Low_complexity 1 24 0 326 245 53 64 chrX 91771386 91771480 -85202660 + L2 LINE L2 3179 3271 -1 2072 130 0 0 chrX 91771495 91771802 -85202338 - AluY SINE Alu -4 307 1 358 75 30 0 chrX 91772536 91772603 -85201537 + (TA)n Simple_repeat Simple_repeat 2 70 0 279 0 0 0 chrX 91772608 91772639 -85201501 + (GA)n Simple_repeat Simple_repeat 2 32 0 214 323 21 65 chrX 91773027 91773120 -85201020 - MIR3 SINE MIR -52 156 68 183 129 0 0 chrX 91774941 91774972 -85199168 + (CCG)n Simple_repeat Simple_repeat 1 31 0 267 31 0 0 chrX 91775023 91775055 -85199085 + (CCG)n Simple_repeat Simple_repeat 3 34 0 2268 96 13 19 chrX 91775555 91775867 -85198273 - AluSg SINE Alu 0 310 1 386 179 0 0 chrX 91776248 91776315 -85197825 - AluSp SINE Alu -100 203 137 258 211 92 0 chrX 91776321 91776397 -85197743 - L1ME LINE L1 -281 5889 5807 2460 65 0 3 chrX 91776775 91777069 -85197071 + AluY SINE Alu 2 294 -17 329 223 134 9 chrX 91777507 91777619 -85196521 + Charlie8 DNA MER1_type 87 212 -2205 317 225 0 0 chrX 91777966 91778037 -85196103 - LTR33A LTR ERVL -1 522 452 22 35 0 0 chrX 91778549 91778578 -85195562 + AT_rich Low_complexity Low_complexity 1 29 0 525 130 76 0 chrX 91779458 91779550 -85194590 - MLT1A1 LTR MaLR -266 99 1 336 48 0 0 chrX 91780691 91780733 -85193407 + (TG)n Simple_repeat Simple_repeat 2 43 0 2889 324 46 24 chrX 91781106 91781591 -85192549 + HERV16 LTR ERVL 1794 2267 -3102 1854 133 0 53 chrX 91781591 91781922 -85192218 + AluSx SINE Alu 1 315 0 2889 324 46 24 chrX 91781922 91783031 -85191109 + HERV16 LTR ERVL 2267 3464 -1905 6454 29 1 0 chrX 91783036 91783829 -85190311 - L1PA3 LINE L1 -2 6153 5360 * 14558 29 0 1 chrX 91783828 91785667 -85188473 + L1P LINE L1 3547 5378 -786 914 345 19 26 chrX 91785682 91786409 -85187731 + HERV16 LTR ERVL 3456 4177 -1477 387 0 0 0 chrX 91786662 91786705 -85187435 + (CA)n Simple_repeat Simple_repeat 2 44 0 276 220 37 73 chrX 91786756 91786865 -85187275 + MIR3 SINE MIR 10 114 -94 1891 148 0 24 chrX 91787555 91787852 -85186288 - AluSg SINE Alu -20 290 1 190 356 29 0 chrX 91788120 91788224 -85185916 + MIR SINE MIR 129 235 -27 817 50 0 0 chrX 91788473 91788574 -85185566 + L1PA8 LINE L1 6066 6166 -6 1984 193 0 21 chrX 91788620 91788993 -85185147 + MLT1A1 LTR MaLR 1 365 0 1369 167 0 0 chrX 91788993 91789227 -85184913 + MLT1A1-int LTR MaLR 1 234 -1501 233 315 79 31 chrX 91789456 91789583 -85184557 - MIR SINE MIR -6 256 124 370 181 0 0 chrX 91791177 91791249 -85182891 - MLT1A2 LTR MaLR -302 72 1 450 36 0 0 chrX 91792094 91792150 -85181990 + (TC)n Simple_repeat Simple_repeat 1 56 0 515 338 7 0 chrX 91792737 91792873 -85181267 - L2 LINE L2 0 3272 3136 27516 117 13 28 chrX 91793017 91799486 -85174654 + L1PA8 LINE L1 3 6487 0 253 265 129 98 chrX 91800048 91800180 -85173960 - MIR SINE MIR -83 179 44 366 337 37 18 chrX 91800320 91800483 -85173657 - MIR3 SINE MIR -5 203 38 2426 120 83 10 chrX 91800696 91801095 -85173045 + MSTA LTR MaLR 1 428 0 610 300 6 24 chrX 91801904 91802074 -85172066 - MIR SINE MIR -80 182 16 442 310 142 7 chrX 91802076 91802231 -85171909 + MER5B DNA MER1_type 1 176 -2 2236 177 57 101 chrX 91802269 91802994 -85171146 - LTR8A LTR ERV1 0 727 35 318 318 53 20 chrX 91803202 91803353 -85170787 - L1MC4a LINE L1 -1949 5859 5704 665 217 73 68 chrX 91803948 91804416 -85169724 - LTR68 LTR ERV1 -24 686 346 273 282 0 24 chrX 91804893 91804978 -85169162 + GA-rich Low_complexity Low_complexity 2 84 0 319 287 73 37 chrX 91805259 91805276 -85168864 - MIR3 SINE MIR -10 198 183 3799 167 33 4 chrX 91805276 91805975 -85168165 + LTR62 LTR ERVK 1 719 0 319 287 73 37 chrX 91805975 91806093 -85168047 - MIR3 SINE MIR -25 183 58 1291 146 121 17 chrX 91806316 91806556 -85167584 - MSTA LTR MaLR 0 428 164 184 300 89 56 chrX 91807583 91807673 -85166467 + MIR3 SINE MIR 113 205 -3 2933 15 3 0 chrX 91809351 91809691 -85164449 + L1PA2 LINE L1 5813 6153 -2 1191 251 64 59 chrX 91810624 91810960 -85163180 + MLT1J LTR MaLR 10 350 -161 2327 70 18 0 chrX 91810960 91811244 -85162896 + AluSg SINE Alu 2 290 -20 1191 251 64 59 chrX 91811244 91811330 -85162810 + MLT1J LTR MaLR 350 434 -77 35 0 0 0 chrX 91811472 91811507 -85162633 + AT_rich Low_complexity Low_complexity 1 35 0 6554 157 8 5 chrX 91811509 91813651 -85160489 - L1PB1 LINE L1 -8 6143 4001 577 274 174 31 chrX 91813940 91814585 -85159555 - L1ME3A LINE L1 -242 5928 5191 662 266 104 3 chrX 91814707 91815042 -85159098 + L1M4 LINE L1 4801 5169 -977 437 342 43 11 chrX 91815386 91815570 -85158570 - MIR SINE MIR -44 218 29 346 333 102 23 chrX 91815805 91815982 -85158158 + MIR3 SINE MIR 14 204 -4 274 331 136 13 chrX 91816187 91816341 -85157799 + MIR SINE MIR 20 192 -70 1749 138 44 24 chrX 91816851 91817149 -85156991 + AluJo SINE Alu 1 304 -8 242 210 46 4 chrX 91817780 91817860 -85156280 + HAL1b LINE L1 1194 1263 -85 6880 195 143 36 chrX 91817969 91820089 -85154051 + L1M3e LINE L1 1 2346 -4691 18332 164 19 9 chrX 91820523 91823719 -85150421 + L1MA1 LINE L1 16 3243 -4322 15706 159 14 12 chrX 91825215 91827780 -85146360 + L1MA1 LINE L1 3238 5797 -1924 759 123 0 0 chrX 91827780 91827886 -85146254 + U6 snRNA snRNA 2 107 0 5064 92 8 7 chrX 91827887 91828611 -85145529 + L1PA8 LINE L1 5447 6171 -1 15706 159 14 12 chrX 91828611 91830514 -85143626 + L1MA1 LINE L1 5796 7720 -1 2237 96 13 7 chrX 91830514 91830636 -85143504 + AluSc SINE Alu 1 121 -188 351 0 0 0 chrX 91830636 91830675 -85143465 + (CA)n Simple_repeat Simple_repeat 2 40 0 2237 96 13 7 chrX 91830675 91830855 -85143285 + AluSc SINE Alu 121 305 -4 187 125 31 0 chrX 91831457 91831489 -85142651 - L2 LINE L2 -12 3260 3228 226 427 24 55 chrX 91831712 91831965 -85142175 - L2 LINE L2 -87 3185 2941 1864 149 7 20 chrX 91832234 91832535 -85141605 - AluJb SINE Alu -15 297 1 209 329 66 13 chrX 91833232 91833308 -85140832 + MER5A DNA MER1_type 60 139 -50 480 189 88 95 chrX 91833368 91833516 -85140624 + MER5B DNA MER1_type 1 147 -31 251 183 33 17 chrX 91833522 91833582 -85140558 - L3 LINE CR1 -278 1299 1239 194 317 50 0 chrX 91833775 91833835 -85140305 + MIR SINE MIR 66 128 -80 449 119 71 0 chrX 91833927 91834011 -85140129 - L1MB2 LINE L1 0 6171 6082 547 290 30 61 chrX 91834014 91834311 -85139829 - L3 LINE CR1 -555 1022 735 10121 145 28 26 chrX 91834330 91835218 -85138922 + L1MA2 LINE L1 3319 4204 -2100 180 0 0 0 chrX 91835218 91835238 -85138902 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6366 60 21 0 chrX 91835238 91836294 -85137846 - L1PA8A LINE L1 -6 6125 5059 10121 145 28 26 chrX 91836294 91836499 -85137641 + L1MA2 LINE L1 4204 4407 -1897 7230 48 1 0 chrX 91836499 91838070 -85136070 + L1PA4 LINE L1 4589 6152 -3 10121 145 28 26 chrX 91838070 91839856 -85134284 + L1MA2 LINE L1 4407 6198 -106 1342 194 10 96 chrX 91840643 91841041 -85133099 - MLT1A1 LTR MaLR -1 364 1 423 0 0 0 chrX 91841198 91841245 -85132895 + (CA)n Simple_repeat Simple_repeat 2 48 0 676 236 82 17 chrX 91841356 91841558 -85132582 - HERV16 LTR ERVL -4147 849 629 515 165 119 45 chrX 91841558 91841734 -85132406 + MER53 DNA DNA 1 189 0 676 236 82 17 chrX 91841734 91841764 -85132376 - HERV16 LTR ERVL -4367 629 602 321 224 71 0 chrX 91841773 91841858 -85132282 - HERV16 LTR ERVL -4585 411 321 299 306 111 61 chrX 91841899 91842079 -85132061 - HERV16 LTR ERVL -4734 262 74 765 304 90 13 chrX 91842131 91842443 -85131697 - LTR16A LTR ERVL -1 449 114 523 309 128 14 chrX 91843237 91843519 -85130621 - L2 LINE L2 -709 2605 2292 199 287 116 112 chrX 91843541 91843799 -85130341 + L2 LINE L2 3011 3269 -3 270 350 96 0 chrX 91843803 91843960 -85130180 - L3 LINE CR1 -154 1423 1252 276 264 33 11 chrX 91844096 91844187 -85129953 - L3 LINE CR1 -738 839 747 250 381 60 0 chrX 91844940 91845074 -85129066 - L3 LINE CR1 -1019 558 417 747 153 0 0 chrX 91845136 91845247 -85128893 - FLAM_C SINE Alu -25 118 8 228 328 0 0 chrX 91845351 91845418 -85128722 - MIR SINE MIR -114 94 28 887 167 25 0 chrX 91848885 91849047 -85125093 + FAM SINE Alu 1 166 -9 1413 185 67 15 chrX 91849166 91849470 -85124670 - AluJo SINE Alu 0 318 1 287 283 87 15 chrX 91849598 91849771 -85124369 - MIR SINE MIR -10 252 9 553 231 75 44 chrX 91850279 91850439 -85123701 - MIR3 SINE MIR -6 202 38 227 303 125 26 chrX 91850475 91850627 -85123513 + L2 LINE L2 2245 2411 -903 233 364 40 28 chrX 91851481 91851657 -85122483 + MER5A DNA MER1_type 9 186 -3 719 275 12 6 chrX 91851939 91852110 -85122030 + MER5B DNA MER1_type 2 173 -5 1436 133 50 0 chrX 91852121 91852339 -85121801 - MER30 DNA MER1_type 0 230 2 653 236 52 58 chrX 91853018 91853192 -85120948 - MER5B DNA MER1_type -5 173 1 1090 73 7 7 chrX 91853253 91853403 -85120737 + L1PA11 LINE L1 6021 6170 -4 194 336 180 8 chrX 91853496 91853618 -85120522 - MIR SINE MIR -6 256 114 415 339 94 74 chrX 91854019 91854358 -85119782 - L2 LINE L2 -4 3268 2923 699 339 73 62 chrX 91854410 91855242 -85118898 - L2 LINE L2 -467 2847 2007 256 336 87 50 chrX 91855496 91855853 -85118287 - L2 LINE L2 -1877 1437 1068 283 366 83 16 chrX 91855885 91856139 -85118001 - L2 LINE L2 -735 2579 2309 21 0 0 0 chrX 91856176 91856197 -85117943 + AT_rich Low_complexity Low_complexity 1 21 0 336 246 52 52 chrX 91857071 91857205 -85116935 - L2 LINE L2 0 3313 3180 189 308 67 58 chrX 91857234 91857354 -85116786 - L2 LINE L2 -237 3035 2915 310 336 92 31 chrX 91857414 91857643 -85116497 - L2 LINE L2 -458 2856 2614 563 181 201 27 chrX 91857646 91857795 -85116345 - MER5A DNA MER1_type -6 183 9 341 175 0 0 chrX 91857890 91857953 -85116187 + L1M4 LINE L1 2703 2765 -3381 1352 185 22 37 chrX 91858189 91858513 -85115627 + L2 LINE L2 2428 2746 -568 302 220 11 33 chrX 91858564 91858655 -85115485 + L1MC5 LINE L1 6962 7050 -911 251 272 89 51 chrX 91859279 91859437 -85114703 - MIR SINE MIR -79 183 20 521 279 57 82 chrX 91861326 91861570 -85112570 + MIR SINE MIR 12 249 -13 383 328 62 58 chrX 91862002 91862402 -85111738 + L1M3d LINE L1 413 814 -5489 3199 241 85 25 chrX 91862455 91862502 -85111638 + L1M3d LINE L1 801 844 -5538 2369 89 0 0 chrX 91862502 91862804 -85111336 - AluY SINE Alu -9 302 1 3199 241 85 25 chrX 91862804 91864370 -85109770 + L1M3d LINE L1 844 2450 -3932 3092 81 0 10 chrX 91864388 91864783 -85109357 - L1PA8A LINE L1 -13 6118 5728 5274 224 30 11 chrX 91864788 91865463 -85108677 + L1M3d LINE L1 2587 3248 -3134 2536 62 0 0 chrX 91865463 91865767 -85108373 + AluY SINE Alu 1 304 -7 5274 224 30 11 chrX 91865767 91866499 -85107641 + L1M3d LINE L1 3248 4021 -2361 862 157 5 4 chrX 91866501 91866717 -85107423 + AluJb SINE Alu 2 294 -18 1436 191 15 0 chrX 91866720 91866992 -85107148 + L1M3d LINE L1 4018 4293 -2089 249 163 0 0 chrX 91866992 91867041 -85107099 + (CA)n Simple_repeat Simple_repeat 2 50 0 699 282 67 52 chrX 91867224 91867358 -85106782 - L1M4 LINE L1 -1829 4317 4186 381 43 0 0 chrX 91867358 91867405 -85106735 + (TG)n Simple_repeat Simple_repeat 2 48 0 699 282 67 52 chrX 91867405 91867841 -85106299 - L1M4 LINE L1 -1960 4186 3739 25 65 0 0 chrX 91867907 91867953 -85106187 + AT_rich Low_complexity Low_complexity 1 46 0 11443 29 1 0 chrX 91868037 91870080 -85104060 - L1PA4 LINE L1 -1 6154 4110 337 206 0 0 chrX 91870503 91870566 -85103574 + MLT1I LTR MaLR 347 409 0 234 282 105 16 chrX 91870567 91870691 -85103449 + MIR SINE MIR 128 262 0 30 0 0 0 chrX 91871025 91871055 -85103085 + AT_rich Low_complexity Low_complexity 1 30 0 648 0 0 0 chrX 91872144 91872215 -85101925 - L1P2 LINE L1 -582 5572 5502 * 2601 3 0 0 chrX 91872211 91872496 -85101644 + L1HS LINE L1 5871 6155 0 234 0 0 0 chrX 91872645 91872671 -85101469 + (CA)n Simple_repeat Simple_repeat 2 27 0 817 347 20 46 chrX 91873973 91874674 -85099466 + PABL_B-int LTR ERV1 988 1670 -5452 362 329 61 37 chrX 91875082 91875410 -85098730 + PABL_B-int LTR ERV1 1994 2329 -4793 2457 321 50 42 chrX 91875656 91877189 -85096951 + PABL_B-int LTR ERV1 2765 4308 -2814 12391 155 94 15 chrX 91877495 91879445 -85094695 + L1M1 LINE L1 1184 3424 -4141 2195 118 0 0 chrX 91879445 91879733 -85094407 + AluSg SINE Alu 2 289 -21 12391 155 94 15 chrX 91879733 91880576 -85093564 + L1M1 LINE L1 3424 4199 -3366 6265 24 0 0 chrX 91880575 91881552 -85092588 - L1P2 LINE L1 -513 5642 4666 * 2462 48 0 33 chrX 91881515 91881846 -85092294 + L1PA4 LINE L1 5833 6152 -3 * 514 274 99 0 chrX 91881863 91882115 -85092025 + L1M4 LINE L1 2111 2387 -3759 1747 144 61 0 chrX 91882119 91882397 -85091743 - AluSq SINE Alu -18 295 1 28 61 0 0 chrX 91882398 91882447 -85091693 + AT_rich Low_complexity Low_complexity 1 49 0 970 242 63 45 chrX 91882456 91882853 -85091287 + L1M4 LINE L1 2371 2774 -3372 8030 28 6 0 chrX 91882927 91884386 -85089754 + L1PA3 LINE L1 4693 6155 0 982 169 42 0 chrX 91884406 91884642 -85089498 + L1M1 LINE L1 4492 4737 -2828 208 159 68 0 chrX 91885007 91885051 -85089089 + CT-rich Low_complexity Low_complexity 6 52 0 221 0 35 0 chrX 91886468 91886497 -85087643 + (GA)n Simple_repeat Simple_repeat 2 31 0 267 31 0 0 chrX 91887497 91887529 -85086611 + (TGG)n Simple_repeat Simple_repeat 1 32 0 702 144 27 7 chrX 91888372 91888518 -85085622 + CT-rich Low_complexity Low_complexity 1 149 0 2044 154 0 0 chrX 91888518 91888829 -85085311 - AluSx SINE Alu -1 311 1 185 306 0 0 chrX 91891295 91891331 -85082809 - L2 LINE L2 -27 3245 3210 356 239 106 56 chrX 91892050 91892230 -85081910 - L1ME4a LINE L1 -2 6119 5931 4196 104 9 0 chrX 91892479 91893028 -85081112 + MER41A LTR ERV1 1 554 0 252 188 14 29 chrX 91893146 91893215 -85080925 - L1ME4a LINE L1 -219 5902 5835 198 0 0 0 chrX 91893327 91893349 -85080791 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 43076 39 21 2 chrX 91893349 91899373 -85074767 - L1PA3 LINE L1 -10 6145 1 26 30 0 0 chrX 91899377 91899410 -85074730 + AT_rich Low_complexity Low_complexity 1 33 0 204 97 0 0 chrX 91899509 91899540 -85074600 + (TC)n Simple_repeat Simple_repeat 2 32 0 411 68 0 0 chrX 91899540 91899599 -85074541 + (CA)n Simple_repeat Simple_repeat 1 59 0 348 325 57 23 chrX 91899634 91900000 -85074140 - L1MC4a LINE L1 -395 5726 5521 4779 181 18 35 chrX 91900053 91900930 -85073210 + MER21B LTR ERV1 1 862 -1 365 221 13 13 chrX 91901191 91901268 -85072872 - L1ME4a LINE L1 -2132 5676 5600 222 299 65 0 chrX 91901288 91901365 -85072775 + L2 LINE L2 2218 2299 -1015 3057 91 9 35 chrX 91901366 91901645 -85072495 + L1MA1 LINE L1 5864 6128 -174 1869 166 0 0 chrX 91901645 91901935 -85072205 + AluJb SINE Alu 9 298 -14 3057 91 9 35 chrX 91901935 91902106 -85072034 + L1MA1 LINE L1 6128 6302 0 23 54 0 0 chrX 91902106 91902143 -85071997 + AT_rich Low_complexity Low_complexity 1 37 0 312 282 64 10 chrX 91902147 91902271 -85071869 - L1ME4a LINE L1 -710 5454 5338 311 148 10 109 chrX 91902606 91902707 -85071433 + L2 LINE L2 2328 2418 -896 443 374 11 0 chrX 91904035 91904214 -85069926 + L2 LINE L2 2465 2645 -669 1794 193 29 29 chrX 91904395 91904769 -85069371 + MLT1A2 LTR MaLR 1 374 0 4740 152 63 12 chrX 91905163 91905942 -85068198 + MER21B LTR ERV1 1 819 -44 198 220 22 22 chrX 91906003 91906094 -85068046 + CT-rich Low_complexity Low_complexity 3 93 0 5126 217 24 33 chrX 91906111 91907924 -85066216 - L1MB7 LINE L1 -18 6166 4409 1579 188 3 26 chrX 91907924 91908233 -85065907 - AluJo SINE Alu -10 302 1 5126 217 24 33 chrX 91908233 91908574 -85065566 - L1MB7 LINE L1 -1775 4409 4066 267 330 124 33 chrX 91908603 91908785 -85065355 + L2 LINE L2 2667 2884 -430 1220 122 53 32 chrX 91908785 91908976 -85065164 - L1MA8 LINE L1 0 6291 6092 1534 175 64 12 chrX 91908976 91909302 -85064838 + MER2 DNA MER2_type 2 344 0 1220 122 53 32 chrX 91909302 91909357 -85064783 - L1MA8 LINE L1 -199 6092 6040 267 330 124 33 chrX 91909357 91909447 -85064693 + L2 LINE L2 2884 2964 -350 672 316 81 45 chrX 91909736 91910243 -85063897 + L2 LINE L2 1528 2052 -1262 1250 193 104 11 chrX 91910458 91910727 -85063413 - AluJb SINE Alu -13 299 6 384 269 82 16 chrX 91910741 91910923 -85063217 - L1MC4a LINE L1 -1928 5880 5687 6169 21 3 3 chrX 91911007 91911727 -85062413 - L1PA4 LINE L1 -13 6142 5423 228 230 103 0 chrX 91911734 91911821 -85062319 - L1ME4a LINE L1 -22 6099 6004 449 326 27 43 chrX 91911832 91912019 -85062121 - MIR SINE MIR -23 239 56 470 288 30 15 chrX 91912064 91912196 -85061944 - MIR SINE MIR -109 153 20 690 266 133 51 chrX 91912415 91912768 -85061372 + L2 LINE L2 2924 3305 -8 605 264 11 23 chrX 91912985 91913159 -85060981 + L2 LINE L2 3142 3313 0 503 295 65 0 chrX 91913359 91913498 -85060642 - MIR SINE MIR -87 175 28 472 266 80 103 chrX 91913833 91914172 -85059968 + L1MC4a LINE L1 5315 5450 -671 1713 178 10 7 chrX 91914172 91914475 -85059665 + AluJo SINE Alu 1 304 -8 472 266 80 103 chrX 91914475 91914661 -85059479 + L1MC4a LINE L1 5450 5639 -482 30 45 0 0 chrX 91914798 91914842 -85059298 + AT_rich Low_complexity Low_complexity 1 44 0 2167 119 0 0 chrX 91915658 91915953 -85058187 + AluSc SINE Alu 1 295 -14 952 260 9 5 chrX 91917552 91917775 -85056365 + MER58A DNA MER1_type 1 224 0 2086 128 0 3 chrX 91918006 91918302 -85055838 - AluSx SINE Alu -17 295 1 22 0 0 0 chrX 91918308 91918330 -85055810 + AT_rich Low_complexity Low_complexity 1 22 0 2242 102 0 0 chrX 91918330 91918634 -85055506 - AluSc SINE Alu -5 304 1 199 326 22 11 chrX 91920303 91920395 -85053745 + L2 LINE L2 2864 2956 -316 362 73 0 18 chrX 91920634 91920689 -85053451 + (TCCCC)n Simple_repeat Simple_repeat 4 57 0 8038 100 30 43 chrX 91920689 91921952 -85052188 + SVA Other Other 1 1246 -140 23 0 0 0 chrX 91921952 91921975 -85052165 + AT_rich Low_complexity Low_complexity 1 23 0 320 229 57 19 chrX 91921975 91922080 -85052060 + MIR SINE MIR 122 230 -32 332 208 0 0 chrX 91922655 91922727 -85051413 - MER116 DNA Mariner 0 80 9 193 289 0 0 chrX 91922890 91922935 -85051205 - L2 LINE L2 -15 3257 3213 359 300 50 33 chrX 91922998 91923186 -85050954 - MIR SINE MIR -64 198 9 209 306 0 47 chrX 91923304 91923389 -85050751 - L2 LINE L2 -1000 2314 2234 202 255 20 0 chrX 91923394 91923445 -85050695 + L2 LINE L2 3262 3313 0 248 225 90 0 chrX 91925249 91925360 -85048780 - L1M4 LINE L1 -851 5295 5175 197 360 45 0 chrX 91925526 91925615 -85048525 + MIR SINE MIR 30 122 -86 297 89 0 0 chrX 91925726 91925771 -85048369 + (CAT)n Simple_repeat Simple_repeat 1 45 0 239 358 90 8 chrX 91925839 91926026 -85048114 + MIR SINE MIR 14 214 -48 1449 288 104 13 chrX 91926313 91926852 -85047288 + MLT1G1 LTR MaLR 1 588 -7 376 308 7 28 chrX 91928653 91928802 -85045338 - MIR SINE MIR -63 145 3 2207 123 3 0 chrX 91928945 91929247 -85044893 + AluSq SINE Alu 9 311 -2 196 263 35 0 chrX 91929276 91929333 -85044807 + L2 LINE L2 3254 3312 -1 23 68 0 0 chrX 91929652 91929696 -85044444 + AT_rich Low_complexity Low_complexity 1 44 0 203 317 119 10 chrX 91929955 91930056 -85044084 + MIR SINE MIR 31 142 -66 343 286 169 43 chrX 91930148 91930379 -85043761 + MIR SINE MIR 3 262 0 272 298 149 29 chrX 91930815 91931023 -85043117 + L1ME LINE L1 5421 5653 -513 407 258 78 0 chrX 91932780 91932908 -85041232 + L1ME LINE L1 5541 5678 -443 389 0 0 0 chrX 91933181 91933227 -85040913 - MADE1 DNA Mariner -34 46 1 506 306 24 90 chrX 91933681 91933936 -85040204 - L2 LINE L2 -69 3203 2966 282 95 0 0 chrX 91934532 91934574 -85039566 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 1758 90 22 2 chrX 91934575 91934884 -85039256 - THE1B LTR MaLR 0 364 1 6665 74 12 1 chrX 91935000 91936026 -85038114 + L1PA13 LINE L1 5128 6163 0 327 65 0 0 chrX 91936318 91936364 -85037776 + (TG)n Simple_repeat Simple_repeat 1 46 0 424 279 93 0 chrX 91937126 91937287 -85036853 + MIR SINE MIR 21 196 -66 2442 71 3 0 chrX 91937548 91937856 -85036284 - AluSc SINE Alu 0 309 1 352 248 114 0 chrX 91938082 91938187 -85035953 + MIR SINE MIR 13 129 -133 631 168 30 12 chrX 91938187 91938354 -85035786 + CT-rich Low_complexity Low_complexity 2 171 0 401 317 0 0 chrX 91938375 91938495 -85035645 + MIR SINE MIR 143 262 0 540 279 89 38 chrX 91938516 91938674 -85035466 - MER96 DNA MER1_type? 0 175 10 491 286 44 31 chrX 91938732 91938937 -85035203 - MIR SINE MIR -19 243 34 404 349 33 7 chrX 91939056 91939208 -85034932 + MIR3 SINE MIR 52 207 -1 265 239 0 14 chrX 91939497 91939568 -85034572 - MARNA DNA Mariner -342 244 175 706 157 9 0 chrX 91939704 91939819 -85034321 + FLAM_A SINE Alu 1 116 -17 253 93 65 37 chrX 91940192 91940300 -85033840 + (TATAA)n Simple_repeat Simple_repeat 2 112 0 23 0 0 0 chrX 91940641 91940664 -85033476 + AT_rich Low_complexity Low_complexity 1 23 0 1039 165 0 0 chrX 91942429 91942605 -85031535 - L1PA16 LINE L1 -9 6157 5982 3658 153 75 11 chrX 91942606 91943803 -85030337 - L1PA16 LINE L1 -419 5746 4495 415 285 116 12 chrX 91944611 91944783 -85029357 + MIR SINE MIR 67 256 -6 571 317 25 5 chrX 91945183 91945382 -85028758 + MIR SINE MIR 50 252 -10 303 323 11 0 chrX 91945484 91945577 -85028563 + L1ME4a LINE L1 4743 4836 -1310 346 287 54 72 chrX 91945688 91945967 -85028173 + L1ME4a LINE L1 5847 6120 -1 241 276 70 58 chrX 91946020 91946176 -85027964 + MIR SINE MIR 20 177 -85 199 236 18 0 chrX 91946267 91946322 -85027818 + MIR SINE MIR 96 151 -111 257 256 179 8 chrX 91947117 91947234 -85026906 - MIR SINE MIR -19 243 107 232 254 0 0 chrX 91947237 91947300 -85026840 - HsTC2 DNA Tc2 -25 1873 1811 241 225 28 0 chrX 91947555 91947626 -85026514 + (TA)n Simple_repeat Simple_repeat 1 73 0 300 270 81 9 chrX 91947670 91947781 -85026359 + MIR3 SINE MIR 81 199 -9 26 0 0 0 chrX 91948221 91948247 -85025893 + AT_rich Low_complexity Low_complexity 1 26 0 522 253 41 107 chrX 91949057 91949188 -85024952 - L1M4 LINE L1 -880 5266 5128 690 183 0 0 chrX 91949188 91949303 -85024837 - FLAM_A SINE Alu -18 115 1 522 253 41 107 chrX 91949303 91949685 -85024455 - L1M4 LINE L1 -1018 5128 4787 361 94 0 0 chrX 91949720 91949773 -85024367 + MER53 DNA DNA 134 186 -3 477 235 27 20 chrX 91949797 91949946 -85024194 - L1M4 LINE L1 -1374 4772 4623 21027 156 24 11 chrX 91950056 91950528 -85023612 - L1MA1 LINE L1 0 7721 7257 2153 93 0 59 chrX 91950528 91950849 -85023291 - AluSx SINE Alu -10 302 1 21027 156 24 11 chrX 91950849 91952083 -85022057 - L1MA1 LINE L1 -464 7257 6041 2623 126 44 0 chrX 91952083 91952489 -85021651 + MSTA LTR MaLR 5 428 0 21027 156 24 11 chrX 91952489 91956664 -85017476 - L1MA1 LINE L1 -1680 6041 1707 297 0 0 0 chrX 91956664 91956697 -85017443 + (TC)n Simple_repeat Simple_repeat 2 34 0 21027 156 24 11 chrX 91956697 91958414 -85015726 - L1MA1 LINE L1 -6014 1707 14 772 269 29 32 chrX 91958444 91958853 -85015287 - L1MDa LINE L1 -3494 3046 2639 341 298 106 34 chrX 91958915 91959123 -85015017 - L1MDa LINE L1 -3899 2641 2419 235 45 68 0 chrX 91959232 91959276 -85014864 + T-rich Low_complexity Low_complexity 2 48 0 2055 237 28 34 chrX 91963109 91963792 -85010348 - L1ME1 LINE L1 -6 6160 5482 2851 3 0 0 chrX 91964055 91964362 -85009778 + AluYb8 SINE Alu 1 307 -11 1790 91 0 4 chrX 91964558 91964789 -85009351 + AluSq SINE Alu 1 230 -83 436 143 0 0 chrX 91964904 91964974 -85009166 - L1M1 LINE L1 -5488 2077 2008 224 318 24 24 chrX 91965225 91965310 -85008830 - L2 LINE L2 -222 3050 2966 183 100 0 0 chrX 91966010 91966040 -85008100 + (TG)n Simple_repeat Simple_repeat 1 30 0 257 290 0 0 chrX 91966057 91966119 -85008021 + (CATA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chrX 91966245 91966271 -85007869 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 91966663 91966691 -85007449 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 91966793 91966821 -85007319 + AT_rich Low_complexity Low_complexity 1 28 0 1819 161 0 31 chrX 91967068 91967359 -85006781 + AluJb SINE Alu 1 282 -30 185 81 0 27 chrX 91967364 91967401 -85006739 + (CAAAA)n Simple_repeat Simple_repeat 1 36 0 283 268 36 36 chrX 91967663 91967775 -85006365 + L2 LINE L2 3011 3122 -191 450 230 291 12 chrX 91967819 91967984 -85006156 - MIR SINE MIR -35 227 17 328 333 0 26 chrX 91968019 91968136 -85006004 + L2 LINE L2 3139 3252 -61 683 252 5 5 chrX 91968175 91968423 -85005717 - L1MEc LINE L1 -3798 2282 2074 442 176 0 76 chrX 91968464 91968583 -85005557 - L1PA15 LINE L1 -3 6162 6053 1813 210 41 86 chrX 91968584 91969164 -85004976 - MLT2B3 LTR ERVL 0 554 1 849 141 0 0 chrX 91969164 91969306 -85004834 - HERVL-B3 LTR ERVL 0 5654 5513 1688 142 94 9 chrX 91969306 91969637 -85004503 - L1PA16 LINE L1 -119 6047 5689 525 169 34 34 chrX 91970393 91970511 -85003629 + MER74A LTR ERVL 436 553 -5 5328 128 15 0 chrX 91970531 91971718 -85002422 - L1PA16 LINE L1 -9 6157 4935 903 298 47 14 chrX 91971722 91972229 -85001911 - L1MEc LINE L1 -4233 2028 1505 2341 111 3 23 chrX 91972287 91972631 -85001509 + MER1B DNA MER1_type 1 337 0 710 269 32 61 chrX 91972761 91973103 -85001037 - L1MEc LINE L1 -5643 427 96 1175 152 14 0 chrX 91973332 91973549 -85000591 - L1MA4 LINE L1 -7 6293 6074 2924 136 18 2 chrX 91973549 91974043 -85000097 + L1MA4 LINE L1 5575 6076 -224 248 307 40 10 chrX 91974042 91974143 -84999997 - L1MEc LINE L1 -5955 115 12 * 303 175 0 0 chrX 91974837 91974894 -84999246 + (TG)n Simple_repeat Simple_repeat 2 58 0 1931 185 24 0 chrX 91974947 91975320 -84998820 - L1MB5 LINE L1 -186 5988 5607 774 163 0 16 chrX 91976231 91976360 -84997780 + FLAM_A SINE Alu 1 127 -6 521 90 25 230 chrX 91976369 91976569 -84997571 - L1MA7 LINE L1 0 6291 6133 249 130 109 0 chrX 91976575 91976621 -84997519 - Charlie8 DNA MER1_type -2056 361 311 675 209 34 45 chrX 91976701 91976878 -84997262 - Charlie8 DNA MER1_type -2187 230 56 783 171 29 69 chrX 91978724 91978970 -84995170 + L1PA15 LINE L1 4241 4476 -1670 554 42 0 0 chrX 91978971 91979042 -84995098 + AluSp/q SINE Alu 235 305 -8 5381 117 25 26 chrX 91979047 91980584 -84993556 + L1PA15 LINE L1 4488 6033 -132 1771 132 51 48 chrX 91980584 91980956 -84993184 + THE1C LTR MaLR 1 373 -2 5381 117 25 26 chrX 91980956 91981089 -84993051 + L1PA15 LINE L1 6033 6165 0 253 313 12 0 chrX 91981444 91981527 -84992613 - L2 LINE L2 -998 2316 2233 1484 229 22 24 chrX 91982209 91982668 -84991472 - L1MA9 LINE L1 -42 6270 5813 1566 196 13 65 chrX 91983030 91983417 -84990723 + MLT1A2 LTR MaLR 1 367 -7 238 285 79 48 chrX 91983847 91984012 -84990128 + MIR SINE MIR 46 215 -47 194 280 203 42 chrX 91984328 91984446 -84989694 + MIR SINE MIR 56 192 -70 269 279 64 14 chrX 91984942 91985082 -84989058 + L1ME4a LINE L1 5964 6110 -11 783 181 0 7 chrX 91985502 91985640 -84988500 + MER5A DNA MER1_type 3 139 -50 191 235 0 59 chrX 91985689 91985740 -84988400 - MER5A DNA MER1_type -130 59 12 2220 109 3 0 chrX 91986506 91986800 -84987340 + AluSp SINE Alu 1 295 -18 21 36 0 0 chrX 91987375 91987403 -84986737 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 91987978 91987999 -84986141 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chrX 91988186 91988216 -84985924 + AT_rich Low_complexity Low_complexity 1 30 0 23417 42 1 5 chrX 91988219 91991927 -84982213 - L1PA5 LINE L1 -7 6147 2450 16281 58 4 4 chrX 91991927 91994102 -84980038 - L1PA5 LINE L1 -3972 2174 1 7621 115 33 8 chrX 91994103 91995304 -84978836 - L1P LINE L1 -4904 1242 11 339 188 0 14 chrX 91995334 91995403 -84978737 - Tigger3(Golem) DNA MER2_type -1 3028 2961 4221 190 58 109 chrX 91995405 91996725 -84977415 + MER52A LTR ERV1 1 1253 -502 1967 119 102 15 chrX 91996725 91997060 -84977080 - THE1B LTR MaLR 0 364 1 11728 102 2 0 chrX 91997060 91998637 -84975503 - THE1B-int LTR MaLR 0 1580 1 1083 127 51 35 chrX 91998637 91998834 -84975306 - THE1B LTR MaLR 0 364 165 27122 124 22 58 chrX 91998836 92005240 -84968900 - L1PA8 LINE L1 -13 6159 2 964 139 90 0 chrX 92005245 92005411 -84968729 - THE1B LTR MaLR -183 181 1 * 2740 185 18 6 chrX 92005411 92005912 -84968228 + MER52A LTR ERV1 1249 1755 0 1499 91 37 21 chrX 92005912 92006206 -84967934 - Tigger3(Golem) DNA MER2_type -67 2962 18 384 82 0 0 chrX 92006214 92006275 -84967865 + (CA)n Simple_repeat Simple_repeat 2 62 0 352 258 164 19 chrX 92006689 92006848 -84967292 + MIR SINE MIR 56 237 -25 266 384 42 19 chrX 92007247 92007463 -84966677 + MIR SINE MIR 2 222 -40 1776 138 111 75 chrX 92007463 92007876 -84966264 - MSTA LTR MaLR 0 428 1 7374 43 10 10 chrX 92008176 92008461 -84965679 + L1PA5 LINE L1 4204 4488 -1666 311 29 0 0 chrX 92008461 92008495 -84965645 + L1PA5 LINE L1 6105 6139 -15 7374 43 10 10 chrX 92008495 92010157 -84963983 + L1PA5 LINE L1 4488 6151 -3 260 258 50 41 chrX 92010861 92010993 -84963147 - L1ME LINE L1 -303 5818 5705 235 200 35 0 chrX 92011052 92011112 -84963028 + MER5A DNA MER1_type 4 66 -123 360 0 0 0 chrX 92011126 92011166 -84962974 + (TG)n Simple_repeat Simple_repeat 2 41 0 1648 163 41 66 chrX 92011169 92011531 -84962609 - MLT2D LTR ERVL -61 353 1 201 244 0 0 chrX 92011531 92011576 -84962564 + MER5A DNA MER1_type 47 91 -98 575 138 0 121 chrX 92012273 92012389 -84961751 + FLAM_A SINE Alu 22 123 -19 238 224 0 0 chrX 92012805 92012854 -84961286 + (TA)n Simple_repeat Simple_repeat 1 49 0 282 56 0 0 chrX 92013046 92013082 -84961058 + (TG)n Simple_repeat Simple_repeat 2 37 0 4753 202 26 13 chrX 92015155 92017083 -84957057 - L1MB7 LINE L1 -16 6168 4211 4421 104 31 41 chrX 92017185 92018188 -84955952 - MER11A LTR ERVK 0 1266 1 452 337 39 0 chrX 92018692 92018873 -84955267 - MIR SINE MIR -74 188 1 432 196 170 33 chrX 92019301 92019454 -84954686 - MIR SINE MIR -71 191 18 283 255 149 19 chrX 92121378 92121539 -84852601 + MIR SINE MIR 56 237 -25 205 390 7 7 chrX 92122021 92122157 -84851983 + MIR SINE MIR 86 221 -41 1738 133 119 100 chrX 92122158 92122578 -84851562 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 92122929 92122952 -84851188 + AT_rich Low_complexity Low_complexity 1 23 0 255 346 15 15 chrX 92123546 92123679 -84850461 - L1ME LINE L1 -333 5837 5705 237 178 0 0 chrX 92123738 92123786 -84850354 + MER5A DNA MER1_type 4 51 -138 1508 154 88 66 chrX 92123786 92123824 -84850316 - MLT2D LTR ERVL 0 414 378 353 39 0 19 chrX 92123824 92123876 -84850264 + (TG)n Simple_repeat Simple_repeat 1 51 0 1508 154 88 66 chrX 92123876 92124201 -84849939 - MLT2D LTR ERVL -36 378 43 604 102 0 127 chrX 92124726 92124844 -84849296 + FLAM_A SINE Alu 22 124 -18 198 0 0 0 chrX 92125493 92125515 -84848625 + (ATG)n Simple_repeat Simple_repeat 1 22 0 4688 210 30 15 chrX 92127602 92129528 -84844612 - L1MB7 LINE L1 -16 6168 4211 601 289 32 0 chrX 92130120 92130307 -84843833 - MIR SINE MIR -68 194 2 441 179 192 33 chrX 92130743 92130894 -84843246 - MIR SINE MIR -71 191 17 208 159 68 0 chrX 92132594 92132638 -84841502 + CT-rich Low_complexity Low_complexity 6 52 0 257 0 30 0 chrX 92134054 92134087 -84840053 + (GA)n Simple_repeat Simple_repeat 2 35 0 218 32 32 0 chrX 92135087 92135118 -84839022 + (TGG)n Simple_repeat Simple_repeat 1 32 0 369 246 57 105 chrX 92137148 92137376 -84836764 + L1M4 LINE L1 2549 2765 -3381 1220 186 28 35 chrX 92137605 92137923 -84836217 + L2 LINE L2 2428 2743 -571 310 245 14 61 chrX 92137924 92137981 -84836159 + L1MC5 LINE L1 6911 6969 -992 195 42 0 0 chrX 92137981 92138005 -84836135 + (CAA)n Simple_repeat Simple_repeat 1 24 0 310 245 14 61 chrX 92138005 92138094 -84836046 + L1MC5 LINE L1 6969 7050 -911 241 216 0 0 chrX 92139098 92139149 -84834991 + L2 LINE L2 3263 3313 0 419 290 50 92 chrX 92140765 92141027 -84833113 + MIR SINE MIR 12 262 0 892 227 135 25 chrX 92141849 92142131 -84832009 - L1ME1 LINE L1 -91 6075 5763 290 282 0 0 chrX 92142129 92142200 -84831940 - HAL1 LINE L1 -2425 82 12 * 27 0 0 0 chrX 92142653 92142680 -84831460 + AT_rich Low_complexity Low_complexity 1 27 0 554 215 52 23 chrX 92142716 92142888 -84831252 + MER5B DNA MER1_type 2 178 0 477 287 36 26 chrX 92143124 92143319 -84830821 - LTR67 LTR ERVL -2 555 359 363 89 0 0 chrX 92143532 92143588 -84830552 + (TG)n Simple_repeat Simple_repeat 1 56 0 252 59 0 0 chrX 92143588 92143622 -84830518 + (GA)n Simple_repeat Simple_repeat 2 35 0 649 299 27 67 chrX 92144020 92144471 -84829669 - L1MB7 LINE L1 -1995 4151 3719 234 202 101 50 chrX 92144541 92144660 -84829480 - L1MB7 LINE L1 -2691 3455 3331 504 289 53 53 chrX 92145165 92145277 -84828863 + MIR SINE MIR 20 131 -131 726 300 14 56 chrX 92145277 92145704 -84828436 + MLT1I LTR MaLR 1 409 0 504 289 53 53 chrX 92145704 92145816 -84828324 + MIR SINE MIR 130 244 -18 207 100 0 0 chrX 92147480 92147510 -84826630 + (CA)n Simple_repeat Simple_repeat 1 30 0 231 124 82 10 chrX 92147604 92147701 -84826439 + (CACCC)n Simple_repeat Simple_repeat 3 106 0 2599 46 7 7 chrX 92148708 92149014 -84825126 - AluSq SINE Alu -7 306 1 461 237 36 14 chrX 92149295 92149434 -84824706 - MIR SINE MIR -89 173 32 286 77 0 0 chrX 92150223 92150262 -84823878 - 5S rRNA rRNA -82 39 1 2276 78 10 10 chrX 92152353 92152649 -84821491 - AluSc SINE Alu -13 296 1 292 291 41 61 chrX 92153114 92153310 -84820830 + MLT1L LTR MaLR 8 199 -416 231 333 12 0 chrX 92153586 92153670 -84820470 + L2 LINE L2 661 745 -2569 339 248 46 26 chrX 92153790 92153943 -84820197 - L1MB7 LINE L1 -3657 2489 2334 1339 143 28 8 chrX 92154341 92154592 -84819548 + L1MA7 LINE L1 6035 6290 -1 207 0 0 0 chrX 92155033 92155056 -84819084 + (T)n Simple_repeat Simple_repeat 1 23 0 1923 188 36 47 chrX 92155213 92155680 -84818460 - MLT1C LTR MaLR 0 467 6 5667 197 39 59 chrX 92155685 92157083 -84817057 - MLT1C-int LTR MaLR 0 1371 1 1671 218 60 25 chrX 92157083 92157529 -84816611 - MLT1C LTR MaLR 0 467 6 1439 18 12 0 chrX 92159318 92159487 -84814653 - L1PA4 LINE L1 0 6155 5985 585 293 100 72 chrX 92159555 92159659 -84814481 + L1M4 LINE L1 3070 3170 -2976 2133 92 0 11 chrX 92159659 92159917 -84814223 + AluSg SINE Alu 25 284 -26 220 27 54 0 chrX 92159917 92159954 -84814186 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 * 414 0 0 0 chrX 92159953 92159999 -84814141 + (TA)n Simple_repeat Simple_repeat 2 47 0 2133 92 0 11 chrX 92159954 92160021 -84814119 + AluSg SINE Alu 284 302 -8 585 293 100 72 chrX 92160021 92160359 -84813781 + L1M4 LINE L1 3170 3497 -2649 1008 137 44 16 chrX 92160359 92160542 -84813598 + L1PA16 LINE L1 5978 6165 -1 585 293 100 72 chrX 92160542 92161940 -84812200 + L1M4 LINE L1 3497 4981 -1165 2976 186 9 17 chrX 92161990 92162651 -84811489 + L1 LINE L1 4432 5087 -1059 5864 18 7 0 chrX 92162660 92163340 -84810800 - L1PA4 LINE L1 -2 6153 5469 4250 220 28 27 chrX 92213340 92214889 -84759251 - L1PA13 LINE L1 -4026 2771 1216 2317 309 40 35 chrX 92214963 92215922 -84758218 - L1PA13 LINE L1 -5824 963 1 215 315 101 34 chrX 92216110 92216288 -84757852 + MIR SINE MIR 47 236 -26 200 384 27 0 chrX 92216598 92216710 -84757430 + MIR SINE MIR 78 192 -70 192 125 0 0 chrX 92217580 92217612 -84756528 + (TAAAAA)n Simple_repeat Simple_repeat 3 34 0 497 354 95 25 chrX 92219544 92219985 -84754155 - L1MC4a LINE L1 -1928 5880 5409 1758 137 3 27 chrX 92220332 92220632 -84753508 - MER4A LTR ERV1 0 664 372 489 116 53 21 chrX 92220682 92220777 -84753363 - MER4A LTR ERV1 -566 98 1 13045 93 46 21 chrX 92220785 92223399 -84750741 - MER4A-int LTR ERV1 -2 6596 3198 6313 85 141 113 chrX 92223463 92226612 -84747528 - MER4A-int LTR ERV1 -3064 3534 1 1564 162 6 27 chrX 92226614 92226967 -84747173 - MER4A LTR ERV1 0 664 261 464 147 53 21 chrX 92226967 92227062 -84747078 - MER4A LTR ERV1 -566 98 1 609 127 24 40 chrX 92227662 92227788 -84746352 + MLT1C LTR MaLR 1 124 -343 657 223 87 0 chrX 92227844 92228081 -84746059 - L1M4 LINE L1 -2135 4011 3729 527 198 0 8 chrX 92228083 92228209 -84745931 - L1PA12 LINE L1 -1703 5881 5757 671 147 0 31 chrX 92228222 92228351 -84745789 + L1PA15 LINE L1 2 126 -6737 * 6216 177 26 27 chrX 92228325 92229645 -84744495 + L1PA15 LINE L1 4384 5646 -1221 1993 138 43 27 chrX 92229645 92230014 -84744126 - THE1C LTR MaLR 0 375 1 6216 177 26 27 chrX 92230014 92230801 -84743339 + L1PA15 LINE L1 5646 6481 -386 248 62 0 0 chrX 92230801 92230849 -84743291 - LTR66 LTR ERVL -169 441 394 6216 177 26 27 chrX 92230849 92231234 -84742906 + L1PA15 LINE L1 6481 6865 -2 1977 133 7 27 chrX 92231300 92231601 -84742539 + AluSq SINE Alu 2 296 -17 9927 209 10 9 chrX 92231609 92233905 -84740235 - L1PA12 LINE L1 -1819 5765 3468 279 0 0 0 chrX 92233905 92233936 -84740204 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5707 51 3 0 chrX 92233936 92234640 -84739500 - L1PA7 LINE L1 -11 6143 5438 8988 108 1 2 chrX 92234640 92236031 -84738109 + L1P LINE L1 3265 4654 -1492 663 12 0 0 chrX 92236013 92236097 -84738043 - L1PA3 LINE L1 -3992 2154 2071 * 25660 28 2 2 chrX 92236096 92240088 -84734052 + L1PA3 LINE L1 2163 6155 0 5206 74 2 6 chrX 92240103 92240909 -84733231 + L1P LINE L1 4623 5423 -743 9219 181 27 91 chrX 92240909 92245181 -84728959 - L1PA12 LINE L1 -4113 3471 1 1806 208 90 7 chrX 92245182 92245930 -84728210 - L1 LINE L1 -3368 3480 2662 463 266 0 0 chrX 92245927 92246051 -84728089 - L1M4 LINE L1 -1955 5253 5130 * 17667 119 13 2 chrX 92246049 92249776 -84724364 - L1PA8 LINE L1 -3 6484 2726 41578 46 3 0 chrX 92249830 92255966 -84718174 - L1PA4 LINE L1 -3 6152 1 6780 188 11 23 chrX 92255969 92258594 -84715546 - L1PA8 LINE L1 -3725 2736 79 * 7590 222 48 41 chrX 92258593 92261613 -84712527 - L1M4 LINE L1 -4171 3038 3 8000 205 44 20 chrX 92261638 92264255 -84709885 - L1 LINE L1 -1596 4614 1958 4786 204 69 14 chrX 92264301 92264973 -84709167 - L1 LINE L1 -4520 1621 988 1799 170 143 8 chrX 92264973 92265350 -84708790 - MSTA LTR MaLR 0 428 1 4786 204 69 14 chrX 92265350 92266256 -84707884 - L1 LINE L1 -5153 988 2 1029 212 113 61 chrX 92266791 92267135 -84707005 - MLT1A1 LTR MaLR 0 365 4 2554 144 37 18 chrX 92267140 92267728 -84706412 - MER4E LTR ERV1 0 766 1 3310 237 6 8 chrX 92267730 92268393 -84705747 - MLT1A1-int LTR MaLR 0 1735 1074 2521 183 20 39 chrX 92268394 92268930 -84705210 + LTR27 LTR ERV1 2 527 -109 308 278 28 35 chrX 92268994 92269138 -84705002 + LTR27 LTR ERV1 494 636 0 4752 206 34 43 chrX 92269141 92270226 -84703914 - MLT1A1-int LTR MaLR -660 1075 1 593 184 48 0 chrX 92270306 92270431 -84703709 - MLT1A1 LTR MaLR -23 342 212 482 292 22 0 chrX 92270617 92270754 -84703386 - L1MD2 LINE L1 -326 6033 5894 * 700 213 62 0 chrX 92270750 92270910 -84703230 - L1MB5 LINE L1 0 6672 6503 1768 240 34 38 chrX 92270923 92271457 -84702683 - LTR55 LTR ERV -16 532 1 2434 195 41 14 chrX 92271458 92271966 -84702174 - L1MB5 LINE L1 -175 6497 5976 297 0 0 0 chrX 92271994 92272027 -84702113 + (TG)n Simple_repeat Simple_repeat 2 34 0 312 219 0 0 chrX 92272027 92272091 -84702049 + L1MC4 LINE L1 6640 6703 -1339 6910 261 42 36 chrX 92272112 92274999 -84699141 - L1MB5 LINE L1 -711 5965 3066 703 34 0 0 chrX 92275086 92275174 -84698966 - L1PA8 LINE L1 -2 6170 6083 377 221 0 0 chrX 92275346 92275423 -84698717 - L1ME3A LINE L1 -5 6165 6089 23 54 0 0 chrX 92278649 92278686 -84695454 + AT_rich Low_complexity Low_complexity 1 37 0 2328 236 28 54 chrX 92278938 92279641 -84694499 - L1MB5 LINE L1 -5267 1275 591 209 311 0 0 chrX 92279775 92279836 -84694304 + (TA)n Simple_repeat Simple_repeat 1 61 0 300 300 200 0 chrX 92279912 92280042 -84694098 - MER5A DNA MER1_type 0 189 34 430 111 7 0 chrX 92280515 92280585 -84693555 - L1P5 LINE L1 -348 5803 5730 14741 206 29 49 chrX 92280792 92283802 -84690338 - L1PA15 LINE L1 -1 6815 3749 657 113 57 0 chrX 92283802 92283908 -84690232 - AluSc SINE Alu -12 297 186 1599 104 0 22 chrX 92283908 92284130 -84690010 - AluSc SINE Alu -92 217 1 14741 206 29 49 chrX 92284130 92285673 -84688467 - L1PA15 LINE L1 -3066 3750 2179 2245 96 7 0 chrX 92285673 92285966 -84688174 - AluSq SINE Alu -17 296 2 14741 206 29 49 chrX 92285966 92288230 -84685910 - L1PA15 LINE L1 -4637 2179 2 442 274 7 0 chrX 92288344 92288490 -84685650 - L1M4 LINE L1 -3465 2681 2535 639 333 76 30 chrX 92288499 92288959 -84685181 - L1MB5 LINE L1 -6060 482 2 188 122 24 0 chrX 92289002 92289043 -84685097 + GA-rich Low_complexity Low_complexity 4 45 0 379 424 19 12 chrX 92289248 92289505 -84684635 - L1MEd LINE L1 -5605 514 256 207 0 0 0 chrX 92289997 92290020 -84684120 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 20308 29 0 0 chrX 92290020 92293212 -84680928 - L1PA3 LINE L1 -10 6145 2954 1488 192 58 20 chrX 92294166 92294458 -84679682 - AluJo SINE Alu -9 303 1 25 51 0 0 chrX 92294769 92294808 -84679332 + AT_rich Low_complexity Low_complexity 1 39 0 279 0 0 0 chrX 92295224 92295255 -84678885 + (CA)n Simple_repeat Simple_repeat 2 32 0 698 171 18 0 chrX 92295255 92295366 -84678774 + Tigger3(Golem) DNA MER2_type 3 115 -2914 * 6409 103 66 12 chrX 92295365 92296394 -84677746 + Tigger3(Golem) DNA MER2_type 1758 2842 -187 2205 149 14 3 chrX 92296397 92296752 -84677388 + Tigger3(Golem) DNA MER2_type 2665 3023 -6 226 211 0 28 chrX 92296758 92296829 -84677311 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 250 202 34 22 chrX 92296835 92296924 -84677216 + L1MC4 LINE L1 6614 6703 -1339 184 57 29 29 chrX 92297991 92298026 -84676114 + (TA)n Simple_repeat Simple_repeat 1 35 0 446 319 81 0 chrX 92298365 92298550 -84675590 + Charlie1b DNA MER1_type 44 243 -280 753 211 0 0 chrX 92298575 92298703 -84675437 - AluJb SINE Alu -30 282 155 687 163 62 17 chrX 92298810 92298988 -84675152 + MER53 DNA DNA 4 189 0 486 276 48 14 chrX 92298997 92299142 -84674998 + LTR41 LTR ERVL 449 598 -175 192 268 36 0 chrX 92299163 92299219 -84674921 - L2 LINE L2 0 3272 3215 857 61 26 0 chrX 92299279 92299394 -84674746 + L1P5 LINE L1 5662 5779 -372 7140 50 1 6 chrX 92299394 92300658 -84673482 + L1PA7 LINE L1 4894 6154 0 1136 139 0 0 chrX 92300658 92300816 -84673324 + AluSq SINE Alu 134 291 -22 2416 112 27 0 chrX 92300970 92301335 -84672805 + L1PB1 LINE L1 5768 6142 -9 213 65 0 0 chrX 92301335 92301366 -84672774 + (CATA)n Simple_repeat Simple_repeat 2 32 0 503 238 152 25 chrX 92301754 92301998 -84672142 + L1MC2 LINE L1 2903 3177 -2969 27 49 0 0 chrX 92302074 92302115 -84672025 + AT_rich Low_complexity Low_complexity 1 41 0 250 313 31 22 chrX 92302195 92302419 -84671721 + L1MC2 LINE L1 3375 3600 -2546 1679 220 104 24 chrX 92302481 92302894 -84671246 + MLT2B1 LTR ERVL 1 446 -74 1117 81 19 0 chrX 92302894 92303055 -84671085 - L1P LINE L1 -737 5417 5254 * 14110 180 23 64 chrX 92303053 92303631 -84670509 - L1P3 LINE L1 -2341 4120 3520 225 65 0 0 chrX 92303631 92303662 -84670478 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 14110 180 23 64 chrX 92303662 92307293 -84666847 - L1P3 LINE L1 -2941 3520 2 4036 117 15 46 chrX 92307293 92307320 -84666820 + Tigger3(Golem) DNA MER2_type 2331 2357 -672 2346 64 3 7 chrX 92307320 92307616 -84666524 + AluY SINE Alu 1 295 -16 4036 117 15 46 chrX 92307616 92307843 -84666297 + Tigger3(Golem) DNA MER2_type 2357 2589 -440 4547 160 17 21 chrX 92307843 92308716 -84665424 - L1MA5 LINE L1 0 6300 5431 4036 117 15 46 chrX 92308716 92309181 -84664959 + Tigger3(Golem) DNA MER2_type 2589 3029 0 239 203 16 0 chrX 92309188 92309252 -84664888 + (TG)n Simple_repeat Simple_repeat 2 66 0 6556 163 35 69 chrX 92309277 92309681 -84664459 + ERVL LTR ERVL 3671 4087 -1677 268 161 71 0 chrX 92309681 92309737 -84664403 - L1MA9 LINE L1 0 6312 6253 6556 163 35 69 chrX 92309737 92310602 -84663538 + ERVL LTR ERVL 4087 4950 -814 528 304 79 40 chrX 92310603 92311097 -84663043 + L1MC2 LINE L1 3685 4197 -1949 5386 192 19 7 chrX 92311106 92312242 -84661898 + L1MC2 LINE L1 5185 6335 -9 2751 208 79 48 chrX 92312431 92313423 -84660717 + L1MDa LINE L1 1348 2387 -4153 4475 162 20 11 chrX 92313423 92314277 -84659863 + L1MA4 LINE L1 5437 6298 -2 2751 208 79 48 chrX 92314277 92314880 -84659260 + L1MDa LINE L1 2387 2970 -3570 912 251 51 25 chrX 92314892 92315378 -84658762 - L1MDa LINE L1 -3968 2572 2074 261 66 82 0 chrX 92315420 92315430 -84658710 + (TAAA)n Simple_repeat Simple_repeat 2 10 -57 2972 31 0 0 chrX 92315430 92315779 -84658361 + L1PA3 LINE L1 5806 6154 -1 261 66 82 0 chrX 92315779 92315829 -84658311 + (TAAA)n Simple_repeat Simple_repeat 10 67 0 493 291 61 0 chrX 92315997 92316145 -84657995 - MIR SINE MIR -81 181 25 28 91 0 0 chrX 92316358 92316435 -84657705 + AT_rich Low_complexity Low_complexity 1 77 0 32 43 0 0 chrX 92316569 92316615 -84657525 + AT_rich Low_complexity Low_complexity 1 46 0 1508 222 84 48 chrX 92316746 92317269 -84656871 - MLT1F LTR MaLR 0 542 1 240 149 0 95 chrX 92317450 92317524 -84656616 + MER106A DNA MER1_type 165 231 -5 180 179 0 0 chrX 92317877 92317916 -84656224 + (CAT)n Simple_repeat Simple_repeat 3 41 0 1017 203 8 33 chrX 92318017 92318259 -84655881 - MER106A DNA MER1_type 0 236 1 914 105 0 8 chrX 92318268 92318401 -84655739 + FLAM_C SINE Alu 2 133 0 208 378 30 0 chrX 92318449 92318584 -84655556 + MIR SINE MIR 53 191 -71 273 146 0 0 chrX 92319647 92319695 -84654445 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 483 63 0 0 chrX 92319694 92319757 -84654383 + (GA)n Simple_repeat Simple_repeat 1 63 0 911 257 14 4 chrX 92319875 92320155 -84653985 - L1MC4 LINE L1 -867 7175 6893 335 261 62 39 chrX 92320164 92320294 -84653846 + MIR SINE MIR 124 256 -6 357 336 15 15 chrX 92321020 92321157 -84652983 + MER5A DNA MER1_type 53 189 0 733 310 158 20 chrX 92321297 92322079 -84652061 - L2 LINE L2 -16 3297 2400 556 283 22 28 chrX 92322264 92322444 -84651696 - MIR SINE MIR 0 262 84 2082 110 0 0 chrX 92322530 92322840 -84651300 + AluSg SINE Alu 1 310 0 27 0 0 0 chrX 92322847 92322874 -84651266 + AT_rich Low_complexity Low_complexity 1 27 0 372 291 92 7 chrX 92322877 92323018 -84651122 - MIR SINE MIR -93 169 17 1207 242 61 5 chrX 92323192 92323584 -84650556 - L1ME LINE L1 -374 5796 5383 405 244 87 21 chrX 92323568 92323919 -84650221 - L1MC5 LINE L1 -442 7519 7258 * 1249 214 66 90 chrX 92323945 92324570 -84649570 - L1MC5 LINE L1 -733 7228 6619 937 234 0 0 chrX 92324749 92324950 -84649190 + MER3 DNA MER1_type 5 205 -4 1195 273 123 7 chrX 92324960 92325536 -84648604 - L1MC5 LINE L1 -1909 5899 5257 29 47 0 0 chrX 92325553 92325596 -84648544 + AT_rich Low_complexity Low_complexity 1 43 0 1765 177 0 17 chrX 92325619 92325919 -84648221 - AluJo SINE Alu -17 295 1 9034 224 52 13 chrX 92327515 92330125 -84644015 - L1PA15-16 LINE L1 -1365 5484 2764 327 224 128 8 chrX 92330352 92330477 -84643663 - L1ME4a LINE L1 0 6121 5982 491 306 0 0 chrX 92331033 92331193 -84642947 + CT-rich Low_complexity Low_complexity 4 163 0 318 352 62 64 chrX 92332261 92332716 -84641424 + L1M2 LINE L1 451 904 -5945 335 316 117 29 chrX 92332991 92333298 -84640842 + L2 LINE L2 2108 2441 -873 215 234 13 0 chrX 92333433 92333510 -84640630 + CT-rich Low_complexity Low_complexity 2 79 0 264 250 0 0 chrX 92333578 92333658 -84640482 + (TA)n Simple_repeat Simple_repeat 2 81 0 2447 167 2 2 chrX 92334494 92334944 -84639196 + L1P LINE L1 3656 4105 -2041 1746 218 48 36 chrX 92334986 92335481 -84638659 + MLT1D LTR MaLR 1 501 -4 206 268 0 0 chrX 92335647 92335703 -84638437 + MIR SINE MIR 190 245 -17 715 229 58 17 chrX 92335744 92335984 -84638156 - L1MD2 LINE L1 -2 6357 6108 15890 208 10 10 chrX 92336296 92339689 -84634451 - L1PA15 LINE L1 0 6816 3421 2571 63 0 0 chrX 92339689 92339990 -84634150 - AluY SINE Alu -10 301 1 15890 208 10 10 chrX 92339990 92341880 -84632260 - L1PA15 LINE L1 -3395 3421 1532 1761 171 36 0 chrX 92342809 92343090 -84631050 + AluJb SINE Alu 1 291 -21 208 288 121 0 chrX 92343188 92343254 -84630886 - L2 LINE L2 -997 2317 2244 199 238 0 0 chrX 92343263 92343305 -84630835 + L2 LINE L2 3263 3304 -9 343 246 33 61 chrX 92343356 92343527 -84630613 + L1MC/D LINE L1 5309 5429 -692 2475 204 51 89 chrX 92343646 92344076 -84630064 + L1M1 LINE L1 13 458 -7107 591 51 0 0 chrX 92344076 92344155 -84629985 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 616 14 0 0 chrX 92344158 92344229 -84629911 - L1PA5 LINE L1 -13 6141 6071 2475 204 51 89 chrX 92344229 92344533 -84629607 + L1M1 LINE L1 460 723 -6842 3896 28 2 0 chrX 92345551 92346050 -84628090 - L1PA3 LINE L1 -747 5399 4900 6538 17 1 0 chrX 92346050 92346794 -84627346 + L1PA3 LINE L1 5405 6152 -3 1980 152 39 36 chrX 92347242 92347605 -84626535 - THE1B LTR MaLR 0 364 1 651 62 10 0 chrX 92347606 92347702 -84626438 - THE1B-int LTR MaLR -1 1579 1483 8764 101 10 29 chrX 92347703 92348758 -84625382 - THE1B-int LTR MaLR -252 1328 302 2504 87 0 3 chrX 92348758 92349070 -84625070 - AluY SINE Alu 0 311 1 8764 101 10 29 chrX 92349070 92349367 -84624773 - THE1B-int LTR MaLR -1278 302 1 1377 173 19 52 chrX 92349367 92349674 -84624466 - THE1B LTR MaLR 0 364 68 334 194 51 97 chrX 92350631 92350827 -84623313 - L1P LINE L1 -1684 4462 4276 * 3094 220 22 25 chrX 92350821 92351689 -84622451 - L1 LINE L1 -2887 3259 2395 * 7419 122 42 9 chrX 92351688 92353090 -84621050 - L1PBa LINE L1 -3906 2956 1456 1049 106 67 0 chrX 92353101 92353353 -84620787 + L1P5 LINE L1 5256 5658 -493 650 220 113 6 chrX 92354039 92354207 -84619933 + MER5A DNA MER1_type 1 186 -3 283 246 20 118 chrX 92354315 92354518 -84619622 - MER112 DNA MER1_type -1 259 77 208 250 75 50 chrX 92354596 92354676 -84619464 + L2 LINE L2 3226 3307 -6 310 380 121 18 chrX 92354834 92355000 -84619140 + MER5A DNA MER1_type 7 189 0 422 224 0 26 chrX 92355962 92356078 -84618062 + LTR33 LTR ERVL 6 118 -403 280 283 86 34 chrX 92356164 92356397 -84617743 + LTR33 LTR ERVL 258 502 -19 557 340 40 24 chrX 92356988 92357358 -84616782 + ERVL LTR ERVL 1374 1749 -4015 409 346 7 2 chrX 92357396 92357594 -84616546 + ERVL LTR ERVL 1791 2031 -3495 1257 337 66 13 chrX 92357683 92358369 -84615771 + ERVL LTR ERVL 3317 4038 -1616 5386 141 13 9 chrX 92358882 92359796 -84614344 - MER49 LTR ERV1 -5 918 1 896 258 25 12 chrX 92359796 92360036 -84614104 + MLT1E2 LTR MaLR 382 624 -2 1189 262 35 0 chrX 92360054 92360488 -84613652 + MLT1E3-int LTR MaLR 31 602 -769 514 221 28 48 chrX 92360684 92360829 -84613311 + MLT1E2 LTR MaLR 217 358 -268 236 235 0 74 chrX 92360925 92361006 -84613134 + MLT1E3-int LTR MaLR 801 875 -496 687 275 75 70 chrX 92361171 92361557 -84612583 + MLT1E3-int LTR MaLR 984 1371 0 1399 222 47 66 chrX 92361557 92362043 -84612097 + MLT1E3 LTR MaLR 1 477 -147 1196 331 57 33 chrX 92362077 92362920 -84611220 - ERVL LTR ERVL -1808 3956 3094 1876 99 0 28 chrX 92363179 92363431 -84610709 - AluSq SINE Alu -68 245 1 241 282 56 14 chrX 92363777 92363848 -84610292 - L2 LINE L2 -17 3296 3223 728 183 21 115 chrX 92363877 92364156 -84609984 + MER112 DNA MER1_type 1 253 -3 560 250 151 7 chrX 92364271 92364423 -84609717 - MER5A DNA MER1_type 0 189 16 250 302 95 26 chrX 92365078 92365194 -84608946 - MIR SINE MIR -19 243 120 236 356 0 0 chrX 92366418 92366550 -84607590 + CT-rich Low_complexity Low_complexity 5 136 0 210 272 0 64 chrX 92367464 92367589 -84606551 + C-rich Low_complexity Low_complexity 5 121 0 24 0 0 0 chrX 92367732 92367756 -84606384 + GC_rich Low_complexity Low_complexity 1 24 0 322 315 102 20 chrX 92368159 92368356 -84605784 + L2 LINE L2 2108 2320 -994 3842 241 102 54 chrX 92368889 92369734 -84604406 - L1M4 LINE L1 -4865 1677 874 1909 133 0 7 chrX 92369734 92370042 -84604098 + AluSx SINE Alu 1 306 0 3842 241 102 54 chrX 92370042 92370794 -84603346 - L1M4 LINE L1 -5668 874 2 2993 252 78 38 chrX 92370799 92372462 -84601678 - L1MEc LINE L1 -2695 3949 2231 1694 207 89 63 chrX 92372462 92372954 -84601186 - MLT1D LTR MaLR 0 505 1 2993 252 78 38 chrX 92372954 92373267 -84600873 - L1MEc LINE L1 -4413 2231 1932 748 290 7 27 chrX 92373256 92373553 -84600587 - L1MEc LINE L1 -4915 1627 1337 * 1874 198 30 33 chrX 92373558 92374168 -84599972 + L1MB3 LINE L1 4880 5498 -680 2315 175 16 35 chrX 92374169 92374621 -84599519 + MSTB2 LTR MaLR 15 457 0 3620 178 24 13 chrX 92374624 92375294 -84598846 + L1MB3 LINE L1 5505 6181 -2 886 225 5 0 chrX 92375301 92375488 -84598652 - L1MB5 LINE L1 -32 6142 5955 1067 177 6 0 chrX 92375490 92375665 -84598475 - MLT1B LTR MaLR -2 388 213 1357 140 32 4 chrX 92375686 92375936 -84598204 - L1MA8 LINE L1 -5 6286 6030 25 65 0 0 chrX 92376030 92376076 -84598064 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chrX 92376128 92376156 -84597984 + AT_rich Low_complexity Low_complexity 1 28 0 398 255 106 35 chrX 92376196 92376337 -84597803 - MER5A DNA MER1_type -1 188 38 422 292 62 25 chrX 92376549 92376710 -84597430 - MER5B DNA MER1_type -6 172 6 249 292 0 14 chrX 92377000 92377072 -84597068 - MER5A DNA MER1_type -118 71 1 255 330 64 11 chrX 92377256 92377350 -84596790 - L2 LINE L2 -31 3241 3143 1904 141 73 24 chrX 92378061 92378402 -84595738 + MER46B DNA MER2_type 4 236 0 427 16 16 16 chrX 92378867 92378928 -84595212 + (TA)n Simple_repeat Simple_repeat 1 61 0 2113 117 7 3 chrX 92381927 92382306 -84591834 + AluSg SINE Alu 1 380 0 446 43 57 0 chrX 92382526 92382596 -84591544 + L1PA12 LINE L1 5951 6024 -144 437 83 0 0 chrX 92382596 92382654 -84591486 + L1PA13 LINE L1 6099 6158 -5 485 281 59 59 chrX 92383004 92383225 -84590915 - LTR16C LTR ERVL -167 324 104 477 0 0 0 chrX 92383363 92383416 -84590724 + (TTC)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chrX 92383416 92383447 -84590693 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3664 53 5 7 chrX 92383447 92383884 -84590256 - L1PA7 LINE L1 -8 6146 5711 2176 144 39 36 chrX 92384142 92384504 -84589636 - THE1B LTR MaLR -1 363 1 203 137 59 20 chrX 92384509 92384560 -84589580 + T-rich Low_complexity Low_complexity 2 54 0 283 332 122 12 chrX 92384592 92384757 -84589383 - MER5A DNA MER1_type -1 188 1 488 195 83 53 chrX 92384832 92385001 -84589139 - L1MC4 LINE L1 -3 8039 7866 21 36 0 0 chrX 92385039 92385067 -84589073 + AT_rich Low_complexity Low_complexity 1 28 0 1319 318 41 5 chrX 92385154 92385595 -84588545 + LTR16B LTR ERVL 8 464 0 1036 317 48 41 chrX 92385597 92385922 -84588218 + HERV16 LTR ERVL 3 335 -4661 2118 125 16 0 chrX 92385922 92386050 -84588090 + AluSg SINE Alu 1 125 -185 180 0 0 0 chrX 92386050 92386070 -84588070 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2118 125 16 0 chrX 92386070 92386246 -84587894 + AluSg SINE Alu 125 310 0 1036 317 48 41 chrX 92386246 92386479 -84587661 + HERV16 LTR ERVL 335 565 -4431 1209 140 30 55 chrX 92386479 92386714 -84587426 - MSTA LTR MaLR 0 428 200 * 1540 184 8 4 chrX 92386698 92386959 -84587181 - MSTB LTR MaLR -164 262 1 9633 182 14 7 chrX 92386959 92388598 -84585542 - MSTB-int LTR MaLR 0 1651 1 2474 166 49 7 chrX 92388598 92389007 -84585133 - MSTB LTR MaLR 0 426 1 1748 310 53 14 chrX 92389009 92389651 -84584489 + HERV16 LTR ERVL 563 1229 -3767 3895 263 45 5 chrX 92389666 92390956 -84583184 + HERV16 LTR ERVL 1622 3009 -1987 17466 0 0 0 chrX 92390956 92392822 -84581318 + HERV16 LTR ERVL 3131 4996 0 2071 225 47 13 chrX 92392822 92393271 -84580869 + LTR16B LTR ERVL 1 464 0 1832 159 0 25 chrX 92393414 92393734 -84580406 + AluJb SINE Alu 1 312 0 16455 180 8 6 chrX 92393773 92397604 -84576536 - L1PA13 LINE L1 -2 6161 2344 249 268 24 49 chrX 92397748 92397830 -84576310 - MIR3 SINE MIR -116 92 13 2140 112 7 0 chrX 92398053 92398340 -84575800 - AluSg1 SINE Alu -20 289 1 232 120 40 0 chrX 92399013 92399063 -84575077 + GA-rich Low_complexity Low_complexity 2 53 0 303 119 0 0 chrX 92399289 92399331 -84574809 - MSTB LTR MaLR 0 428 387 40969 69 5 4 chrX 92399331 92405480 -84568660 + L1PA3 LINE L1 1 6155 0 25216 71 5 6 chrX 92405476 92407027 -84567113 + L1PA6 LINE L1 2061 3613 -2541 * 7248 19 0 0 chrX 92407027 92407803 -84566337 + L1PA2 LINE L1 5374 6154 -1 25216 71 5 6 chrX 92407803 92410149 -84563991 + L1PA6 LINE L1 3613 5949 -205 2085 142 26 58 chrX 92410776 92411192 -84562948 + LTR57 LTR ERVL 1 403 -8 2847 39 3 6 chrX 92411811 92412141 -84561999 - L1PA5 LINE L1 -1 6153 5825 195 205 0 0 chrX 92414824 92414863 -84559277 - L3 LINE CR1 -1 1576 1538 2199 194 78 11 chrX 92414875 92415348 -84558792 + LTR22 LTR ERVK 1 505 -4 37403 96 5 5 chrX 92415353 92420306 -84553834 + HERVK22 LTR ERVK 1 4956 -1881 6273 36 0 0 chrX 92420306 92420999 -84553141 + L1PA3 LINE L1 5458 6150 -5 1471 277 90 21 chrX 92421045 92421514 -84552626 + MLT1D-int LTR MaLR 871 1371 0 1724 189 67 89 chrX 92421514 92422022 -84552118 + MLT1D LTR MaLR 1 497 -8 191 37 0 37 chrX 92422037 92422064 -84552076 - MIR3 SINE MIR -32 176 151 209 239 65 0 chrX 92422227 92422273 -84551867 - MIR SINE MIR -66 142 94 209 176 0 0 chrX 92422292 92422326 -84551814 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 304 224 71 0 chrX 92422398 92422483 -84551657 + MIR SINE MIR 172 262 0 2296 114 31 26 chrX 92424139 92424526 -84549614 + LTR57 LTR ERVL 15 403 -8 2368 99 0 10 chrX 92425693 92426006 -84548134 + AluSg SINE Alu 1 310 0 293 318 155 7 chrX 92428172 92428320 -84545820 - MIR3 SINE MIR 0 208 39 180 380 0 0 chrX 92428462 92428512 -84545628 + MIR SINE MIR 92 141 -67 277 244 24 49 chrX 92430170 92430252 -84543888 + MIR3 SINE MIR 13 92 -116 305 259 0 25 chrX 92430343 92430424 -84543716 + L2 LINE L2 2310 2388 -926 2499 78 0 0 chrX 92430487 92430796 -84543344 + AluSc SINE Alu 1 309 0 250 291 0 0 chrX 92430805 92430884 -84543256 + L1MC4 LINE L1 6614 6692 -1350 386 342 153 29 chrX 92431015 92431742 -84542398 + L2 LINE L2 2453 3269 -3 819 146 236 50 chrX 92432697 92432752 -84541388 - MER46A DNA MER2_type -2495 236 193 1857 138 0 28 chrX 92432752 92433067 -84541073 - AluJb SINE Alu 0 307 1 819 146 236 50 chrX 92433067 92433209 -84540931 - MER46A DNA MER2_type -2538 193 1 21 0 0 0 chrX 92434257 92434278 -84539862 + AT_rich Low_complexity Low_complexity 1 21 0 211 269 0 128 chrX 92435920 92436076 -84538064 - MIR3 SINE MIR -72 136 1 196 213 21 0 chrX 92436996 92437043 -84537097 + MIR3 SINE MIR 129 176 -32 2595 188 24 29 chrX 92437967 92438511 -84535629 + L1M1 LINE L1 -824 4294967012 -7016 * 6068 194 11 13 chrX 92438510 92439767 -84534373 + L1M1 LINE L1 3444 4698 -2034 3278 121 6 12 chrX 92439775 92440459 -84533681 + L1M1 LINE L1 5612 6290 -600 251 296 30 83 chrX 92440735 92440904 -84533236 - MIR3 SINE MIR -5 203 44 2482 193 30 65 chrX 92441042 92441611 -84532529 - MLT2B3 LTR ERVL -2 552 4 726 212 8 8 chrX 92441698 92441830 -84532310 - FLAM_A SINE Alu -1 132 1 507 275 95 80 chrX 92442106 92442571 -84531569 + L2 LINE L2 2842 3313 0 3019 132 65 4 chrX 92442733 92443212 -84530928 + MER89 LTR ERV1 50 557 -2 1346 192 4 48 chrX 92443779 92444029 -84530111 + MER8 DNA MER2_type 1 239 0 1692 185 17 0 chrX 92444319 92444616 -84529524 - AluJb SINE Alu -10 302 1 4346 233 19 20 chrX 92444940 92445996 -84528144 + L1M4 LINE L1 1 1055 -5487 2181 186 11 34 chrX 92445996 92446553 -84527587 + L1M1 LINE L1 4954 5497 -743 1134 282 29 63 chrX 92446580 92447041 -84527099 + L1MB7 LINE L1 331 1455 -5198 5610 202 54 48 chrX 92447052 92448225 -84525915 + L1MB7 LINE L1 4017 5181 -1589 1938 137 153 16 chrX 92448225 92448598 -84525542 - MSTA LTR MaLR 0 428 5 5610 202 54 48 chrX 92448598 92449014 -84525126 + L1MB7 LINE L1 5181 5593 -1177 1688 194 19 33 chrX 92449014 92449380 -84524760 - MLT1A1 LTR MaLR -4 361 1 5610 202 54 48 chrX 92449380 92450514 -84523626 + L1MB7 LINE L1 5593 6751 -19 27 49 0 0 chrX 92451370 92451411 -84522729 + AT_rich Low_complexity Low_complexity 1 41 0 597 279 61 15 chrX 92451615 92451812 -84522328 + MIR SINE MIR 13 218 -44 2332 137 46 3 chrX 92452412 92452762 -84521378 - MLT1A1 LTR MaLR 0 365 1 507 269 14 21 chrX 92453474 92453619 -84520521 + MIR SINE MIR 12 155 -107 232 120 40 0 chrX 92453976 92454026 -84520114 + GA-rich Low_complexity Low_complexity 2 53 0 303 119 0 0 chrX 92454252 92454294 -84519846 - MSTA LTR MaLR 0 428 387 15834 115 14 11 chrX 92454294 92456656 -84517484 + L1P LINE L1 1 2367 -3779 1433 175 0 0 chrX 92456672 92456912 -84517228 - Tigger6 DNA MER2_type -839 244 5 772 286 19 23 chrX 92456912 92457171 -84516969 - L1M4 LINE L1 -1807 4339 4082 904 204 0 7 chrX 92457256 92457449 -84516691 - MER33 DNA MER1_type -261 63 1 219 245 0 19 chrX 92457576 92457629 -84516511 - L2 LINE L2 -213 3059 3008 224 130 0 43 chrX 92457646 92457692 -84516448 - L2 LINE L2 -374 2898 2855 369 0 0 0 chrX 92457698 92457739 -84516401 + (A)n Simple_repeat Simple_repeat 1 41 0 228 340 104 0 chrX 92457819 92457925 -84516215 + L2 LINE L2 3150 3266 -6 346 339 0 0 chrX 92458143 92458273 -84515867 - MLT1K LTR MaLR -318 270 141 284 319 26 0 chrX 92459185 92459298 -84514842 + MIR SINE MIR 72 187 -75 185 284 46 101 chrX 92459559 92459662 -84514478 + L2 LINE L2 3142 3239 -28 249 33 0 0 chrX 92459662 92459692 -84514448 + (ACTG)n Simple_repeat Simple_repeat 1 30 0 437 125 11 0 chrX 92461429 92461517 -84512623 + (TG)n Simple_repeat Simple_repeat 2 90 0 1759 153 3 3 chrX 92462016 92462322 -84511818 + AluJb SINE Alu 1 306 0 291 207 35 0 chrX 92462965 92463023 -84511117 + MER58 DNA MER1_type 2356 2415 -5 205 213 0 33 chrX 92463174 92463235 -84510905 + GA-rich Low_complexity Low_complexity 1 59 0 999 290 88 58 chrX 92463659 92464129 -84510011 + L1MC4a LINE L1 2676 3130 -3016 1475 175 0 45 chrX 92464129 92464421 -84509719 + AluJo SINE Alu 2 280 -32 279 0 0 0 chrX 92464426 92464457 -84509683 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 999 290 88 58 chrX 92464457 92465386 -84508754 + L1MC4a LINE L1 3133 4138 -2008 2437 178 40 110 chrX 92465430 92466676 -84507464 + L1MA9 LINE L1 5153 6274 -38 479 276 62 31 chrX 92466692 92467015 -84507125 + L1MC4a LINE L1 4182 4514 -1632 2035 131 10 93 chrX 92467027 92467099 -84507041 + MLT1A1 LTR MaLR 5 81 -284 482 36 0 0 chrX 92467099 92467155 -84506985 - L1PA3 LINE L1 -3 6152 6097 2035 131 10 93 chrX 92467155 92467470 -84506670 + MLT1A1 LTR MaLR 81 360 -5 8355 227 54 72 chrX 92467478 92468003 -84506137 + L1MC4a LINE L1 4522 5055 -2753 2176 98 0 13 chrX 92468003 92468334 -84505806 + AluSx SINE Alu 1 327 0 8355 227 54 72 chrX 92468334 92469035 -84505105 + L1MC4a LINE L1 5055 5767 -2041 1620 137 3 93 chrX 92469035 92469356 -84504784 + AluJo SINE Alu 1 292 -20 8355 227 54 72 chrX 92469356 92470579 -84503561 + L1MC4a LINE L1 5767 7011 -797 849 151 14 27 chrX 92470579 92470725 -84503415 - L1PA11 LINE L1 -3 6171 6028 8355 227 54 72 chrX 92470725 92471140 -84503000 + L1MC4a LINE L1 7011 7324 -484 2367 212 27 18 chrX 92471140 92471654 -84502486 + LTR53 LTR ERVL 1 519 0 8355 227 54 72 chrX 92471654 92472131 -84502009 + L1MC4a LINE L1 7324 7808 0 2335 82 10 0 chrX 92472702 92473007 -84501133 + AluSp SINE Alu 1 308 -5 209 308 0 26 chrX 92473288 92473405 -84500735 + GA-rich Low_complexity Low_complexity 2 115 0 2227 94 3 3 chrX 92473504 92473858 -84500282 - AluSc SINE Alu 0 354 1 364 234 102 89 chrX 92474182 92474417 -84499723 + L2 LINE L2 3076 3313 0 278 303 151 40 chrX 92474425 92474577 -84499563 + L2 LINE L2 2872 3040 -273 345 332 40 13 chrX 92474733 92474900 -84499240 + MIR SINE MIR 34 203 -59 455 189 0 0 chrX 92474901 92474975 -84499165 + Tigger3(Golem) DNA MER2_type 1 74 -2955 811 287 56 56 chrX 92475558 92476115 -84498025 - L1MDa LINE L1 -5983 557 1 24 0 0 0 chrX 92476369 92476393 -84497747 + AT_rich Low_complexity Low_complexity 1 24 0 9690 140 22 7 chrX 92476802 92479367 -84494773 + L1MA2 LINE L1 3697 6304 0 4882 241 47 44 chrX 92479383 92480723 -84493417 + MSTD-int LTR MaLR 392 1735 0 1457 192 120 31 chrX 92480732 92481043 -84493097 + MSTD LTR MaLR 6 355 -41 1896 146 61 28 chrX 92481043 92481406 -84492734 + THE1C LTR MaLR 1 375 0 1457 192 120 31 chrX 92481406 92481453 -84492687 + MSTD LTR MaLR 355 396 0 1718 206 58 13 chrX 92483074 92483453 -84490687 - MSTD LTR MaLR 0 396 1 618 124 0 21 chrX 92483587 92483684 -84490456 + PABL_A LTR ERV1 1 95 -565 43663 42 1 0 chrX 92483684 92488921 -84485219 + L1P LINE L1 14 5255 -891 895 18 27 0 chrX 92488920 92489031 -84485109 - L1P LINE L1 -738 5417 5304 * 6270 38 0 0 chrX 92489031 92489776 -84484364 + L1P LINE L1 4553 5297 -849 6155 112 3 37 chrX 92489784 92490865 -84483275 + L1PB2 LINE L1 5097 6150 -1 4342 232 35 9 chrX 92490915 92491973 -84482167 - L1 LINE L1 -1590 4556 3472 605 189 20 24 chrX 92492008 92492169 -84481971 + L1M4c LINE L1 1536 1770 -4612 9833 234 12 58 chrX 92492175 92496604 -84477536 + L1PA13 LINE L1 2 4736 -2061 * 20633 157 11 22 chrX 92496599 92496935 -84477205 + L1MA1 LINE L1 197 535 -7186 2492 51 0 29 chrX 92496935 92497248 -84476892 + AluY SINE Alu 1 304 -7 20633 157 11 22 chrX 92497248 92504405 -84469735 + L1MA1 LINE L1 535 7612 -109 969 23 0 23 chrX 92504405 92504536 -84469604 + (GAA)n Simple_repeat Simple_repeat 3 130 0 1149 296 47 28 chrX 92504565 92505058 -84469082 - HERV16 LTR ERVL -2779 2217 1716 1620 271 84 7 chrX 92505348 92505905 -84468235 - HERV16 LTR ERVL -4197 799 200 825 330 94 8 chrX 92505915 92506267 -84467873 - LTR16A LTR ERVL -44 406 25 2547 182 14 23 chrX 92506304 92506820 -84467320 - MER74A LTR ERVL -45 513 3 206 359 30 30 chrX 92506824 92506955 -84467185 + L2 LINE L2 3137 3267 -5 2027 254 70 18 chrX 92507419 92508046 -84466094 - L1ME1 LINE L1 -23 6143 5484 6572 104 11 1 chrX 92508046 92509467 -84464673 + L1PA10 LINE L1 4763 6168 0 31752 34 0 1 chrX 92509558 92514116 -84460024 - L1PA4 LINE L1 -2 6153 1600 2078 100 0 52 chrX 92514189 92514498 -84459642 - AluSx SINE Alu -19 293 1 22 56 0 0 chrX 92514542 92514578 -84459562 + AT_rich Low_complexity Low_complexity 1 36 0 1031 222 35 8 chrX 92514853 92515110 -84459030 - Tigger6 DNA MER2_type -255 1342 1079 1356 193 4 22 chrX 92515111 92515386 -84458754 - Tigger6 DNA MER2_type -1163 434 165 282 139 0 0 chrX 92515390 92515433 -84458707 - Tigger6 DNA MER2_type -1353 244 202 10578 243 32 32 chrX 92715435 92719684 -84254456 - L1PA12 LINE L1 -2875 4709 431 2425 65 0 7 chrX 92719684 92719976 -84254164 - AluY SINE Alu -21 290 1 10578 243 32 32 chrX 92719976 92720408 -84253732 - L1PA12 LINE L1 -7153 431 1 2839 202 66 128 chrX 92720411 92721658 -84252482 - L1MCb LINE L1 -4876 1169 1 1712 233 28 0 chrX 92721870 92722299 -84251841 - L1M4 LINE L1 -1115 5031 4591 525 168 0 56 chrX 92722397 92722504 -84251636 - MLT1D LTR MaLR -400 105 5 2026 208 71 29 chrX 92723342 92723819 -84250321 - MLT1D LTR MaLR -8 497 1 2095 173 25 48 chrX 92724179 92724578 -84249562 + MLT1B LTR MaLR 1 390 0 3366 143 22 5 chrX 92724801 92725651 -84248489 + L1MA7 LINE L1 4813 5673 -618 381 75 0 0 chrX 92725652 92725705 -84248435 + (TA)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chrX 92725764 92725784 -84248356 + (TA)n Simple_repeat Simple_repeat 2 21 0 2206 148 43 13 chrX 92725784 92726177 -84247963 + L1MA7 LINE L1 5887 6291 0 1571 263 77 17 chrX 92726578 92727123 -84247017 - L2 LINE L2 -9 3304 2725 231 96 0 58 chrX 92727123 92727175 -84246965 + LTR66 LTR ERVL 391 439 -171 361 278 0 0 chrX 92727201 92727291 -84246849 + L1MC4 LINE L1 6614 6703 -1339 1734 158 4 18 chrX 92727342 92727621 -84246519 - AluSx SINE Alu -37 275 1 1739 216 77 184 chrX 92727622 92728132 -84246008 - L2 LINE L2 -600 2714 2151 7410 172 40 7 chrX 92728132 92730166 -84243974 + L1PA14 LINE L1 4082 6160 -1 1739 216 77 184 chrX 92730166 92730369 -84243771 - L2 LINE L2 -1163 2151 1928 610 211 23 16 chrX 92730369 92730497 -84243643 - MER94 DNA DNA -5 129 1 1739 216 77 184 chrX 92730497 92730863 -84243277 - L2 LINE L2 -1386 1928 1636 6230 172 22 19 chrX 92730869 92732072 -84242068 - L1MC1 LINE L1 -8 6605 5393 2103 105 10 10 chrX 92732072 92732385 -84241755 - L1MA4A LINE L1 0 6303 5991 6230 172 22 19 chrX 92732385 92732773 -84241367 - L1MC1 LINE L1 -1220 5393 5008 1811 166 75 3 chrX 92732767 92733098 -84241042 - L1MC1 LINE L1 -6051 375 21 * 1300 257 15 6 chrX 92733099 92733426 -84240714 - L2 LINE L2 -1669 1645 1316 677 163 44 0 chrX 92733429 92733564 -84240576 - L1MB4 LINE L1 0 6180 6040 2212 184 38 12 chrX 92733564 92733987 -84240153 + MLT1C LTR MaLR 3 436 -31 3393 187 45 46 chrX 92734000 92734897 -84239243 - L1MB5 LINE L1 -106 6068 5171 7501 42 22 35 chrX 92734897 92735971 -84238169 - L1PA7 LINE L1 -3 6151 5091 3393 187 45 46 chrX 92735971 92736095 -84238045 - L1MB5 LINE L1 -1003 5171 5045 2089 138 26 55 chrX 92736095 92736478 -84237662 - THE1C LTR MaLR -2 373 2 3393 187 45 46 chrX 92736478 92736581 -84237559 - L1MB5 LINE L1 -1129 5045 4943 5359 209 27 7 chrX 92736729 92738644 -84235496 - L1MC1 LINE L1 -423 5910 3957 2711 114 6 0 chrX 92738742 92739093 -84235047 - THE1A LTR MaLR -2 353 1 12494 93 10 0 chrX 92739093 92740658 -84233482 - THE1A-int LTR MaLR 0 1580 1 3052 73 0 0 chrX 92740658 92741013 -84233127 - THE1A LTR MaLR 0 355 1 294 278 74 9 chrX 92741021 92741129 -84233011 + MLT1J1 LTR MaLR 121 235 -211 1237 151 41 28 chrX 92743120 92743427 -84230713 - LTR45B LTR ERV1 -131 358 4 1456 256 67 17 chrX 92743428 92743889 -84230251 - MLT1D LTR MaLR -21 484 1 25 31 0 0 chrX 92752844 92752876 -84221264 + AT_rich Low_complexity Low_complexity 1 32 0 2500 228 58 33 chrX 92754867 92755499 -84218641 - MER21B LTR ERV1 -48 815 168 22 35 0 0 chrX 92756075 92756104 -84218036 + AT_rich Low_complexity Low_complexity 1 29 0 1139 271 35 22 chrX 92756149 92756515 -84217625 - L1MC4a LINE L1 -1966 5842 5472 * 2646 211 32 24 chrX 92756496 92757212 -84216928 - L1MC4a LINE L1 -2799 3347 2626 423 0 0 0 chrX 92757217 92757264 -84216876 + (TTTTA)n Simple_repeat Simple_repeat 2 48 0 10038 164 18 26 chrX 92757265 92760217 -84213923 - L1PA10 LINE L1 -19 6464 3489 2003 50 12 8 chrX 92760217 92760459 -84213681 - AluY SINE Alu -63 248 6 10038 164 18 26 chrX 92760459 92763975 -84210165 - L1PA10 LINE L1 -2994 3489 10 4408 8 0 0 chrX 92764520 92765015 -84209125 - L1PA2 LINE L1 0 6155 5661 3098 8 0 0 chrX 92765015 92765381 -84208759 + L1PA2 LINE L1 5292 5657 -498 348 250 94 80 chrX 92765857 92766081 -84208059 - L1MC/D LINE L1 -2560 5546 5320 2955 179 13 11 chrX 92766286 92766840 -84207300 - MER68 LTR ERV1 -2 560 6 17366 123 26 9 chrX 92767780 92769814 -84204326 - L1PA10 LINE L1 -2 6166 4167 2443 74 3 0 chrX 92769814 92770113 -84204027 + AluY SINE Alu 1 300 -11 17366 123 26 9 chrX 92770113 92770223 -84203917 - L1PA10 LINE L1 -2001 4167 4060 2295 116 0 0 chrX 92770223 92770534 -84203606 - AluSx SINE Alu -1 311 1 17366 123 26 9 chrX 92770534 92771311 -84202829 - L1PA10 LINE L1 -2108 4060 3297 369 0 0 0 chrX 92771311 92771352 -84202788 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 17366 123 26 9 chrX 92771352 92772357 -84201783 - L1PA10 LINE L1 -2871 3297 2172 841 93 0 0 chrX 92772357 92772464 -84201676 - U6 snRNA snRNA 0 107 1 2893 236 40 20 chrX 92772733 92773431 -84200709 - L1MC/D LINE L1 -1860 4350 3625 2351 90 7 3 chrX 92773431 92773730 -84200410 - AluSx SINE Alu -12 300 1 2893 236 40 20 chrX 92773730 92773994 -84200146 - L1MC/D LINE L1 -2585 3625 3368 351 230 17 14 chrX 92774077 92774135 -84200005 - L1MA9 LINE L1 -117 6217 6161 231 61 0 0 chrX 92774135 92774168 -84199972 + (TG)n Simple_repeat Simple_repeat 2 34 0 351 230 17 14 chrX 92774168 92774255 -84199885 - L1MA9 LINE L1 -173 6161 6066 1893 214 33 50 chrX 92774266 92774784 -84199356 - MER21B LTR ERV1 -1 862 354 1659 200 40 10 chrX 92774787 92775306 -84198834 - L1 LINE L1 -2806 3340 2806 2872 260 59 9 chrX 92775327 92775717 -84198423 - L1MC/D LINE L1 -4172 2039 1670 207 0 0 0 chrX 92775717 92775740 -84198400 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2872 260 59 9 chrX 92775740 92777048 -84197092 - L1MC/D LINE L1 -4541 1670 470 727 163 26 137 chrX 92777057 92777257 -84196883 - L1M3c LINE L1 -5890 251 87 2767 151 9 0 chrX 92777257 92777682 -84196458 - MSTB1 LTR MaLR 0 432 4 727 163 26 137 chrX 92777682 92777751 -84196389 - L1M3c LINE L1 -6054 87 12 328 242 16 8 chrX 92777809 92777937 -84196203 - L1M4 LINE L1 -2887 3757 3629 266 257 0 0 chrX 92777928 92777998 -84196142 - L1MA5 LINE L1 -201 6099 6030 * 1870 256 48 48 chrX 92777994 92778864 -84195276 - L1M4 LINE L1 -5218 1324 455 239 0 0 31 chrX 92778880 92778912 -84195228 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 327 283 132 74 chrX 92778954 92779279 -84194861 - L1M4 LINE L1 -6029 617 274 * 469 365 56 16 chrX 92779273 92779522 -84194618 + L1MEd LINE L1 544 802 -5403 41430 45 2 0 chrX 92779547 92785674 -84188466 - L1PA4 LINE L1 -13 6142 7 503 313 43 8 chrX 92785996 92786348 -84187792 + L1MEd LINE L1 1253 1616 -4780 246 249 74 46 chrX 92786367 92786583 -84187557 + L1MC4 LINE L1 7311 7637 -405 413 267 114 80 chrX 92786612 92787022 -84187118 + L1MC5 LINE L1 7604 8001 -26 221 347 14 0 chrX 92787099 92787171 -84186969 - L2 LINE L2 -22 3250 3178 6277 219 72 25 chrX 92787472 92789360 -84184780 + L1M4c LINE L1 29 2099 -4285 276 238 62 0 chrX 92789380 92789452 -84184688 + L1MB8 LINE L1 1 456 -5815 410 112 0 6 chrX 92789555 92789623 -84184517 - L1MC/D LINE L1 -625 5555 5491 277 144 76 17 chrX 92789670 92789788 -84184352 + (TTATA)n Simple_repeat Simple_repeat 5 129 0 337 156 13 13 chrX 92789806 92789883 -84184257 - L1MC/D LINE L1 -696 5478 5402 3600 214 55 10 chrX 92789988 92791611 -84182529 + L1MB8 LINE L1 4410 6106 -276 4208 176 55 11 chrX 92791612 92792488 -84181652 - MER54A LTR ERVL 0 901 1 929 228 46 4 chrX 92792488 92792751 -84181389 + L1MB8 LINE L1 6103 6376 -6 2325 80 0 3 chrX 92792768 92793093 -84181047 + AluY SINE Alu 1 324 0 21 0 0 0 chrX 92793097 92793118 -84181022 + AT_rich Low_complexity Low_complexity 1 21 0 321 311 80 42 chrX 92793228 92793313 -84180827 + L1MC/D LINE L1 5309 5389 -2419 737 303 71 41 chrX 92793313 92793628 -84180512 + MLT1I LTR MaLR 3 334 -75 1729 168 0 0 chrX 92793628 92793890 -84180250 - AluSx SINE Alu -21 291 30 737 303 71 41 chrX 92793890 92793967 -84180173 + MLT1I LTR MaLR 334 407 -2 321 311 80 42 chrX 92793967 92794093 -84180047 + L1MC/D LINE L1 5389 5528 -2280 627 164 0 0 chrX 92794105 92794227 -84179913 - L1MA8 LINE L1 0 6291 6170 233 272 12 0 chrX 92794241 92794322 -84179818 - L1ME LINE L1 -351 5770 5689 3939 200 112 125 chrX 92794874 92797030 -84177110 + L1MC/D LINE L1 12 2139 -4287 3127 235 33 26 chrX 92797031 92797595 -84176545 + L1MC/D LINE L1 3186 3762 -2664 3420 65 9 9 chrX 92797595 92798044 -84176096 + L1PA10 LINE L1 5719 6167 -1 3127 235 33 26 chrX 92798044 92798544 -84175596 + L1MC/D LINE L1 3762 4257 -2169 745 191 0 126 chrX 92798546 92798792 -84175348 + MLT1A2 LTR MaLR 1 215 -159 861 174 27 0 chrX 92798850 92798999 -84175141 + MLT1A2 LTR MaLR 222 374 0 961 230 18 0 chrX 92799017 92799243 -84174897 + L1MC/D LINE L1 4275 4504 -1922 918 81 48 8 chrX 92799271 92799395 -84174745 - AluSq/x SINE Alu -184 129 1 347 194 0 87 chrX 92800137 92800240 -84173900 + MER3 DNA MER1_type 8 101 -108 444 185 111 79 chrX 92800259 92800475 -84173665 + L1MCa LINE L1 4050 4272 -2154 1098 243 53 24 chrX 92800477 92800888 -84173252 + L1MCa LINE L1 4966 5388 -1038 305 281 70 35 chrX 92800914 92801085 -84173055 + L1MC4 LINE L1 7583 7759 -283 2076 120 10 7 chrX 92801098 92801397 -84172743 + AluSx SINE Alu 1 300 -12 3235 213 59 13 chrX 92801449 92802593 -84171547 + L1MC/D LINE L1 4513 5716 -743 191 229 202 18 chrX 92803034 92803143 -84170997 + MIR SINE MIR 123 251 -11 410 215 122 9 chrX 92803369 92803476 -84170664 + L2 LINE L2 3194 3312 -1 2026 106 0 17 chrX 92803820 92804112 -84170028 + AluSp SINE Alu 1 287 -26 1489 228 63 29 chrX 92804361 92804849 -84169291 - MLT1D LTR MaLR 0 505 1 351 325 125 70 chrX 92806154 92806609 -84167531 - L1M2 LINE L1 -5925 924 445 1719 171 11 7 chrX 92812507 92812814 -84161326 + AluJo SINE Alu 1 308 0 2222 108 0 3 chrX 92812823 92813120 -84161020 + AluSx SINE Alu 1 296 -16 726 162 73 0 chrX 92813209 92813345 -84160795 + L1MB4 LINE L1 6031 6176 -4 540 176 10 0 chrX 92813674 92813776 -84160364 - LTR37B LTR ERV1 -169 299 197 3160 220 68 27 chrX 92815616 92816383 -84157757 - MER21B LTR ERV1 -48 815 18 275 176 0 88 chrX 92816386 92816454 -84157686 - MER21B LTR ERV1 -767 96 35 1627 170 59 0 chrX 92816458 92816764 -84157376 + L1MA4 LINE L1 5966 6289 -11 31 0 0 0 chrX 92816767 92816798 -84157342 + AT_rich Low_complexity Low_complexity 1 31 0 1936 254 86 46 chrX 92817233 92817911 -84156229 + MER21B LTR ERV1 1 705 -158 370 75 30 15 chrX 92818109 92818176 -84155964 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 324 0 0 0 chrX 92818369 92818405 -84155735 + (TG)n Simple_repeat Simple_repeat 2 37 0 223 340 53 58 chrX 92818873 92819079 -84155061 + L2 LINE L2 2842 3046 -226 2186 88 0 63 chrX 92819174 92819493 -84154647 - AluSx SINE Alu -9 303 5 29 0 0 0 chrX 92819528 92819557 -84154583 + AT_rich Low_complexity Low_complexity 1 29 0 929 278 0 4 chrX 92819708 92819953 -84154187 - MIR SINE MIR -13 249 6 195 344 128 8 chrX 92820088 92820338 -84153802 + L2 LINE L2 942 1221 -2093 685 301 172 5 chrX 92820759 92821148 -84152992 - MLT1L LTR MaLR -31 584 131 507 308 44 19 chrX 92821475 92821634 -84152506 - MIR SINE MIR -83 179 17 804 206 0 15 chrX 92821865 92822001 -84152139 - AluJb SINE Alu -177 135 2 963 125 0 22 chrX 92822231 92822367 -84151773 - FLAM_C SINE Alu 0 133 1 27 0 0 0 chrX 92822368 92822395 -84151745 + AT_rich Low_complexity Low_complexity 1 27 0 2562 253 45 38 chrX 92822433 92823210 -84150930 + L1MCc LINE L1 5 1141 -5281 1558 152 75 58 chrX 92823206 92823240 -84150900 + L1MCc LINE L1 1553 1585 -5356 * 2115 79 0 0 chrX 92823240 92823493 -84150647 + AluSq SINE Alu 3 255 -58 1558 152 75 58 chrX 92823493 92823565 -84150575 + L1MCc LINE L1 1585 1654 -5287 3749 138 0 8 chrX 92823565 92824095 -84150045 - MER1A DNA MER1_type -1 526 1 1558 152 75 58 chrX 92824095 92824116 -84150024 + L1MCc LINE L1 1654 1673 -5268 3029 124 26 15 chrX 92824116 92824576 -84149564 - MER4C LTR ERV1 0 465 1 1558 152 75 58 chrX 92824576 92824808 -84149332 + L1MCc LINE L1 1673 1920 -5021 2488 199 107 34 chrX 92824821 92824992 -84149148 - MER50 LTR ERV1 0 734 577 2132 96 16 26 chrX 92824992 92825295 -84148845 + AluSg SINE Alu 1 300 -10 2488 199 107 34 chrX 92825295 92825795 -84148345 - MER50 LTR ERV1 -157 577 14 2238 106 12 12 chrX 92825795 92826117 -84148023 - MER50-int LTR ERV1 -2 7203 6882 * 14631 178 34 75 chrX 92826115 92826824 -84147316 - MER50-int LTR ERV1 -892 6526 5790 2443 69 0 13 chrX 92826824 92827127 -84147013 + AluSq SINE Alu 1 299 -14 14631 178 34 75 chrX 92827127 92827438 -84146702 - MER50-int LTR ERV1 -1628 5790 5468 3499 78 4 9 chrX 92827438 92827888 -84146252 - LTR7 LTR ERV1 -2 448 1 14631 178 34 75 chrX 92827888 92827987 -84146153 - MER50-int LTR ERV1 -1950 5468 5366 2210 114 0 0 chrX 92827987 92828294 -84145846 + AluSg SINE Alu 1 307 -3 14631 178 34 75 chrX 92828294 92829054 -84145086 - MER50-int LTR ERV1 -2052 5366 4577 2393 62 3 16 chrX 92829054 92829358 -84144782 - AluY SINE Alu -11 300 1 14631 178 34 75 chrX 92829358 92831145 -84142995 - MER50-int LTR ERV1 -2841 4577 795 1093 127 49 78 chrX 92831129 92831373 -84142767 - MER50-int LTR ERV1 -4804 1142 906 * 1291 115 26 5 chrX 92831350 92831542 -84142598 - MER50-int LTR ERV1 -814 4066 3871 773 134 31 8 chrX 92831524 92831651 -84142489 - MER50-int LTR ERV1 -1165 3715 3586 * 526 173 18 0 chrX 92831648 92831754 -84142386 - MER50-int LTR ERV1 -3800 1080 1004 * 1981 132 46 65 chrX 92831762 92832179 -84141961 - MER50-int LTR ERV1 -451 4766 1398 1273 126 48 17 chrX 92832176 92832406 -84141734 - MER50-int LTR ERV1 -5593 1612 1376 * 1886 127 6 30 chrX 92832407 92832761 -84141379 - MER4A LTR ERV1 0 664 261 392 145 181 0 chrX 92832761 92832844 -84141296 - MER4A LTR ERV1 -566 98 1 5097 151 70 15 chrX 92832844 92833922 -84140218 - MER50-int LTR ERV1 -5827 1378 161 2787 134 199 21 chrX 92833943 92834547 -84139593 + L1M1 LINE L1 1754 2464 -5101 438 217 130 0 chrX 92834547 92834639 -84139501 - MER50-int LTR ERV1 -7092 113 10 2469 223 106 19 chrX 92834685 92835352 -84138788 - MER50 LTR ERV1 0 734 10 1004 174 148 13 chrX 92835355 92835405 -84138735 + L1MCa LINE L1 1424 1466 -4960 180 0 0 0 chrX 92835405 92835425 -84138715 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1004 174 148 13 chrX 92835425 92835733 -84138407 + L1MCa LINE L1 1466 1919 -4507 1721 151 7 132 chrX 92835778 92836216 -84137924 + LTR8 LTR ERV1 1 383 -308 1298 81 141 0 chrX 92836216 92836414 -84137726 - MER4A-int LTR ERV1 -6372 226 1 1921 121 1 39 chrX 92836417 92836968 -84137172 - MER4A LTR ERV1 0 664 1 415 320 35 35 chrX 92837002 92837165 -84136975 - L1MC4a LINE L1 -1900 5908 5743 4829 117 23 26 chrX 92837165 92837894 -84136246 - LTR8A LTR ERV1 0 727 1 415 320 35 35 chrX 92837894 92837958 -84136182 - L1MC4a LINE L1 -2064 5744 5681 214 344 0 0 chrX 92838540 92838604 -84135536 - L2 LINE L2 -58 3214 3151 332 274 102 73 chrX 92844950 92845195 -84128945 - MIR SINE MIR -10 252 1 198 333 0 0 chrX 92845320 92845389 -84128751 - L2 LINE L2 -1010 2304 2236 180 0 0 0 chrX 92845600 92845620 -84128520 + (T)n Simple_repeat Simple_repeat 1 20 0 297 257 101 0 chrX 92846003 92846112 -84128028 - L1ME4a LINE L1 -204 5917 5798 479 236 34 27 chrX 92846279 92846294 -84127846 - L1MA10 LINE L1 -2 6332 6318 1810 201 30 72 chrX 92846294 92846429 -84127711 - L1ME1 LINE L1 -5 6161 6022 2045 128 0 43 chrX 92846429 92846733 -84127407 - AluSx SINE Alu -21 291 1 1810 201 30 72 chrX 92846733 92847135 -84127005 - L1ME1 LINE L1 -144 6022 5647 402 196 52 0 chrX 92847137 92847234 -84126906 - L1ME1 LINE L1 -1589 4557 4456 275 234 11 53 chrX 92847229 92847323 -84126817 - L1ME4a LINE L1 -1979 5829 5740 * 1587 187 78 15 chrX 92847334 92847665 -84126475 - MER90 LTR ERV1 -223 352 1 297 236 57 65 chrX 92847712 92847835 -84126305 - L1ME4a LINE L1 -2496 5546 5425 2131 131 3 0 chrX 92849147 92849444 -84124696 - AluSx SINE Alu -14 298 1 342 248 112 64 chrX 92849470 92849541 -84124599 + MARNA DNA Mariner 106 187 -399 707 133 8 31 chrX 92849541 92849669 -84124471 - L1MA6 LINE L1 0 6300 6176 342 248 112 64 chrX 92849669 92849722 -84124418 + MARNA DNA Mariner 187 236 -350 871 224 11 17 chrX 92850658 92850837 -84123303 - MER5B DNA MER1_type 0 178 1 529 269 101 32 chrX 92850838 92851146 -84122994 + L1ME4a LINE L1 5506 5834 -287 1874 135 36 0 chrX 92851425 92851706 -84122434 + AluSx SINE Alu 1 291 -21 1056 122 70 0 chrX 92852009 92852165 -84121975 + AluSq SINE Alu 128 294 -19 631 119 0 0 chrX 92853059 92853143 -84120997 + MER30 DNA MER1_type 147 230 0 391 245 83 44 chrX 92853178 92853244 -84120896 + L1MC5 LINE L1 7718 7780 -181 318 26 0 0 chrX 92853244 92853283 -84120857 + (CA)n Simple_repeat Simple_repeat 2 40 0 391 245 83 44 chrX 92853283 92853420 -84120720 + L1MC5 LINE L1 7780 7929 -32 27 0 0 0 chrX 92853528 92853555 -84120585 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chrX 92853762 92853786 -84120354 + AT_rich Low_complexity Low_complexity 1 24 0 246 311 48 48 chrX 92853807 92853910 -84120230 - MIR3 SINE MIR -94 114 12 700 303 55 9 chrX 92854319 92854537 -84119603 + MIR SINE MIR 3 230 -32 260 208 0 0 chrX 92854811 92854859 -84119281 - L2 LINE L2 0 3313 3266 1218 154 47 23 chrX 92854953 92855167 -84118973 + MER20 DNA MER1_type 1 219 0 456 295 26 73 chrX 92855232 92855466 -84118674 + MIR SINE MIR 34 256 -6 192 287 69 30 chrX 92855835 92855936 -84118204 + MIR SINE MIR 20 124 -84 355 263 50 50 chrX 92856095 92856255 -84117885 - MLT1I LTR MaLR -174 235 76 1521 196 107 9 chrX 92856259 92856585 -84117555 - MLT1A1 LTR MaLR 0 365 8 258 356 107 0 chrX 92856796 92856945 -84117195 + MIR SINE MIR 49 213 -49 1567 259 64 17 chrX 92857375 92857843 -84116297 + MLT1E2 LTR MaLR 137 626 0 267 210 32 0 chrX 92858913 92858975 -84115165 + L1ME LINE L1 5589 5652 -469 207 93 47 23 chrX 92860192 92860235 -84113905 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 321 271 112 14 chrX 92860355 92860584 -84113556 + MLT1G1 LTR MaLR 257 498 -57 2491 73 3 0 chrX 92861673 92861975 -84112165 + AluSg SINE Alu 1 303 -7 180 0 0 0 chrX 92862273 92862293 -84111847 + (T)n Simple_repeat Simple_repeat 1 20 0 1955 60 0 0 chrX 92862297 92862532 -84111608 - AluY SINE Alu -76 235 1 265 200 77 0 chrX 92863096 92863161 -84110979 + MIR SINE MIR 108 177 -85 5093 127 27 12 chrX 92863511 92864402 -84109738 - L1MA8 LINE L1 -48 6243 5340 1311 123 28 20 chrX 92864402 92864654 -84109486 - L1MA5 LINE L1 0 6300 6047 24 0 0 0 chrX 92865599 92865623 -84108517 + AT_rich Low_complexity Low_complexity 1 24 0 1243 231 104 5 chrX 92865627 92866021 -84108119 - L1ME1 LINE L1 -279 5887 5455 2413 73 0 0 chrX 92866346 92866647 -84107493 - AluY SINE Alu -10 301 1 9276 146 16 12 chrX 92866945 92867913 -84106227 - L1MA2 LINE L1 0 6304 5341 2540 66 0 0 chrX 92867913 92868214 -84105926 - AluSc SINE Alu -8 301 1 9276 146 16 12 chrX 92868214 92870022 -84104118 - L1MA2 LINE L1 -963 5341 3508 2026 129 18 63 chrX 92870022 92870403 -84103737 - THE1B LTR MaLR 0 364 1 9276 146 16 12 chrX 92870403 92870444 -84103696 - L1MA2 LINE L1 -2796 3508 3469 33484 35 2 2 chrX 92870446 92870825 -84103315 - L1PA4 LINE L1 0 6155 5778 2829 22 0 0 chrX 92870825 92871138 -84103002 - AluYb8 SINE Alu -5 313 1 33484 35 2 2 chrX 92871138 92875817 -84098323 - L1PA4 LINE L1 -377 5778 1097 3126 211 32 6 chrX 92875815 92876655 -84097485 - L1MA2 LINE L1 -2661 3485 2624 * 4780 232 49 153 chrX 92876663 92876759 -84097381 + L2 LINE L2 498 602 -2712 2486 55 0 7 chrX 92876759 92877068 -84097072 + AluY SINE Alu 1 307 -4 4780 232 49 153 chrX 92877068 92877872 -84096268 + L2 LINE L2 602 1488 -1826 2043 224 51 51 chrX 92877872 92878425 -84095715 - MLT2B3 LTR ERVL 0 554 2 4780 232 49 153 chrX 92878425 92880208 -84093932 + L2 LINE L2 1488 2902 -412 17451 106 15 11 chrX 92880208 92884064 -84090076 + L1PA8A LINE L1 2044 6043 -88 364 303 272 3 chrX 92884069 92884356 -84089784 + L2 LINE L2 2946 3309 -4 611 305 58 49 chrX 92884377 92884857 -84089283 - L1ME2 LINE L1 -239 5925 5436 2210 103 20 0 chrX 92884857 92885158 -84088982 - AluSx SINE Alu -5 307 1 611 305 58 49 chrX 92885158 92885333 -84088807 - L1ME2 LINE L1 -728 5436 5264 1977 242 73 5 chrX 92885555 92886129 -84088011 - L1ME3A LINE L1 -5 6165 5553 3208 203 19 36 chrX 92886169 92887532 -84086608 - L1MB8 LINE L1 0 6178 4851 * 6571 183 102 85 chrX 92887522 92889890 -84084250 + L1MCa LINE L1 6 2412 -4014 17850 173 55 13 chrX 92889945 92892903 -84081237 + L1M1 LINE L1 13 2845 -4720 2264 59 17 24 chrX 92892903 92893191 -84080949 + AluY SINE Alu 1 286 -25 17850 173 55 13 chrX 92893191 92893303 -84080837 + L1M1 LINE L1 2845 2951 -4614 1964 90 0 0 chrX 92893303 92893570 -84080570 + L1PA8 LINE L1 5906 6172 0 2277 88 3 19 chrX 92893574 92893909 -84080231 + AluSq SINE Alu 1 313 0 17850 173 55 13 chrX 92893909 92896473 -84077667 + L1M1 LINE L1 2953 5881 -1684 479 149 43 0 chrX 92896471 92896565 -84077575 - L1M1 LINE L1 -4618 2947 2850 * 5378 114 111 43 chrX 92896554 92897573 -84076567 - L1M1 LINE L1 -4982 2583 1496 549 155 35 26 chrX 92897577 92897693 -84076447 - L1M1 LINE L1 -7433 132 16 188 0 74 0 chrX 92897715 92897742 -84076398 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chrX 92897767 92897796 -84076344 + AT_rich Low_complexity Low_complexity 1 29 0 200 304 36 0 chrX 92897854 92897910 -84076230 + L2 LINE L2 3233 3290 -23 1819 165 25 70 chrX 92898446 92898845 -84075295 - MLT2C1 LTR ERVL 0 397 17 332 270 0 0 chrX 92900391 92900465 -84073675 - MER5B DNA MER1_type 0 178 105 380 259 109 65 chrX 92900466 92900623 -84073517 + MER63A DNA MER1_type 1 170 -1518 1613 11 0 0 chrX 92900623 92900805 -84073335 - L1PA2 LINE L1 -3 6152 5971 380 259 109 65 chrX 92900805 92900848 -84073292 + MER63A DNA MER1_type 170 210 0 705 227 81 6 chrX 92900951 92901123 -84073017 + MIR SINE MIR 47 231 -31 29 0 0 0 chrX 92901620 92901649 -84072491 + AT_rich Low_complexity Low_complexity 1 29 0 567 196 90 11 chrX 92902277 92902466 -84071674 - L1M4 LINE L1 -1299 4847 4644 6711 65 0 0 chrX 92902472 92903504 -84070636 - L1PA6 LINE L1 -7 6147 5105 252 188 0 0 chrX 92904649 92904713 -84069427 + A-rich Low_complexity Low_complexity 1 64 0 252 352 38 19 chrX 92906733 92906838 -84067302 + L2 LINE L2 3156 3262 -10 27 0 0 0 chrX 92906922 92906949 -84067191 + AT_rich Low_complexity Low_complexity 1 27 0 200 97 32 0 chrX 92908738 92908769 -84065371 + (TATATG)n Simple_repeat Simple_repeat 2 33 0 528 252 82 77 chrX 92909883 92909969 -84064171 - L1MEc LINE L1 -3393 2822 2738 2506 48 0 22 chrX 92909969 92910284 -84063856 - AluY SINE Alu -3 308 1 528 252 82 77 chrX 92910284 92910808 -84063332 - L1MEc LINE L1 -3477 2738 2209 38 0 0 0 chrX 92910890 92910928 -84063212 + AT_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chrX 92911103 92911136 -84063004 + AT_rich Low_complexity Low_complexity 1 33 0 1432 78 15 5 chrX 92911150 92911355 -84062785 - L1PA10 LINE L1 -3 6165 5959 576 63 0 0 chrX 92911355 92911434 -84062706 + L1PA10 LINE L1 5874 5952 -216 332 319 92 25 chrX 92911480 92911643 -84062497 - L1MEc LINE L1 -4576 1820 1647 2257 120 0 0 chrX 92911651 92911952 -84062188 + AluSq SINE Alu 1 301 -12 1251 136 34 15 chrX 92911961 92912167 -84061973 + AluJb SINE Alu 87 296 -16 3565 191 92 25 chrX 92912194 92912989 -84061151 - MER21B LTR ERV1 -15 848 1 719 341 35 45 chrX 92912993 92913506 -84060634 - L1MEc LINE L1 -4750 1646 1139 344 306 89 39 chrX 92914838 92915145 -84058995 + L1ME LINE L1 5430 5736 -385 2152 84 49 0 chrX 92915194 92915481 -84058659 - AluSp SINE Alu -12 301 1 192 163 0 0 chrX 92915889 92915932 -84058208 + CT-rich Low_complexity Low_complexity 1 43 0 1112 208 57 44 chrX 92916016 92916382 -84057758 - L1MC5 LINE L1 -629 7332 6962 1302 250 15 24 chrX 92916434 92916762 -84057378 - L2 LINE L2 -555 2759 2435 1519 177 32 11 chrX 92917024 92917306 -84056834 + AluJo SINE Alu 1 288 -24 625 110 48 1 chrX 92917306 92917976 -84056164 + (TA)n Simple_repeat Simple_repeat 1 700 0 1227 198 20 104 chrX 92918315 92918816 -84055324 + L1MB7 LINE L1 2342 2800 -3346 229 247 79 22 chrX 92918949 92919038 -84055102 - L2 LINE L2 -613 2701 2608 207 0 0 0 chrX 92920502 92920525 -84053615 + (A)n Simple_repeat Simple_repeat 1 23 0 208 174 22 0 chrX 92922236 92922282 -84051858 + CT-rich Low_complexity Low_complexity 1 47 0 287 150 17 0 chrX 92923684 92923744 -84050396 + G-rich Low_complexity Low_complexity 5 65 0 204 298 16 33 chrX 92925333 92925454 -84048686 + CT-rich Low_complexity Low_complexity 1 119 0 320 277 168 7 chrX 92925526 92925681 -84048459 + MIR SINE MIR 17 196 -66 3119 195 27 35 chrX 92926858 92928058 -84046082 + L1MB7 LINE L1 4211 5496 -688 1855 98 46 0 chrX 92928058 92928333 -84045807 + L1MA5A LINE L1 5995 6292 -5 3119 195 27 35 chrX 92928333 92928971 -84045169 + L1MB7 LINE L1 5496 6138 -46 273 299 30 0 chrX 92931063 92931130 -84043010 - MIR SINE MIR -165 97 29 40599 50 2 2 chrX 92932368 92938516 -84035624 + L1PA3 LINE L1 11 6155 0 21 0 0 0 chrX 92938576 92938597 -84035543 + AT_rich Low_complexity Low_complexity 1 21 0 1834 184 21 16 chrX 92938626 92939006 -84035134 - LTR52 LTR ERVL -39 382 1 225 0 0 0 chrX 92939280 92939305 -84034835 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 1127 112 11 0 chrX 92939350 92939423 -84034717 + (CATATA)n Simple_repeat Simple_repeat 1 253 0 1127 112 11 0 chrX 92939423 92939601 -84034539 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 205 152 0 0 chrX 92939697 92939730 -84034410 + L2 LINE L2 3269 3301 -12 227 244 33 0 chrX 92941642 92941732 -84032408 + (TA)n Simple_repeat Simple_repeat 1 93 0 323 65 0 0 chrX 92941903 92941949 -84032191 - MADE1 DNA Mariner 0 80 35 2195 109 0 0 chrX 92942157 92942450 -84031690 + AluSx SINE Alu 1 293 -19 1000 211 63 0 chrX 92942546 92942816 -84031324 - L1ME1 LINE L1 -288 6158 5872 23 0 0 0 chrX 92943329 92943352 -84030788 + AT_rich Low_complexity Low_complexity 1 23 0 970 215 104 5 chrX 92943369 92943772 -84030368 - L1P5 LINE L1 -530 5621 5176 953 186 21 8 chrX 92943907 92944149 -84029991 - L1ME1 LINE L1 -960 5466 5222 7740 20 1 0 chrX 92944669 92946128 -84028012 - L1PA2 LINE L1 -6 6149 4690 4787 21 0 0 chrX 92946129 92946710 -84027430 + L1PA2 LINE L1 4114 4694 -1452 1338 229 57 46 chrX 92946705 92947141 -84026999 - L1ME1 LINE L1 -1189 5237 4797 * 765 190 22 22 chrX 92947146 92947325 -84026815 - L1ME1 LINE L1 -6229 197 19 444 285 21 60 chrX 92947343 92947624 -84026516 - L1MEc LINE L1 -4396 2167 1898 2271 132 8 3 chrX 92947765 92948144 -84025996 - L1MA4 LINE L1 -557 5743 5363 2567 173 28 6 chrX 92948144 92948679 -84025461 + L1MA4 LINE L1 5745 6294 -6 1267 265 36 21 chrX 92948719 92948931 -84025209 - L1MEc LINE L1 -4550 1834 1627 474 66 0 121 chrX 92948931 92949022 -84025118 + MADE1 DNA Mariner 1 80 0 1267 265 36 21 chrX 92949022 92949329 -84024811 - L1MEc LINE L1 -4757 1627 1307 4316 191 41 14 chrX 92949330 92950510 -84023630 - L1MB8 LINE L1 -2 6456 5206 2209 98 0 0 chrX 92950510 92950795 -84023345 - AluSx SINE Alu -27 285 1 4316 191 41 14 chrX 92950795 92951474 -84022666 - L1MB8 LINE L1 -1252 5206 4547 188 276 17 0 chrX 92951674 92951732 -84022408 - L2 LINE L2 -1 3271 3213 22 35 0 0 chrX 92954301 92954330 -84019810 + AT_rich Low_complexity Low_complexity 1 29 0 242 228 0 0 chrX 92954339 92954396 -84019744 + (TA)n Simple_repeat Simple_repeat 2 58 0 252 143 0 0 chrX 92954474 92954516 -84019624 + (CATA)n Simple_repeat Simple_repeat 1 42 0 6419 80 17 2 chrX 92955381 92957072 -84017068 + L1PA10 LINE L1 4451 6168 0 2485 141 37 19 chrX 92963828 92964554 -84009586 - L1M3 LINE L1 -419 5761 5022 4667 148 9 46 chrX 92964558 92965539 -84008601 - L1MA4A LINE L1 -89 6214 5270 1450 145 52 0 chrX 92965541 92965790 -84008350 + MER7A DNA MER2_type 2 261 -85 412 222 0 0 chrX 92965861 92965942 -84008198 + MER7A DNA MER2_type 255 335 -1 6385 233 128 17 chrX 92965942 92968452 -84005688 - L1MA4A LINE L1 -875 5271 2485 225 333 110 41 chrX 92968487 92968733 -84005407 + L2 LINE L2 1618 1880 -1434 5737 121 6 15 chrX 92968735 92969625 -84004515 + THE1C-int LTR MaLR 699 1580 0 2031 90 69 74 chrX 92969625 92970002 -84004138 + THE1C LTR MaLR 1 375 0 1906 244 70 100 chrX 92970005 92970718 -84003422 - L1MB8 LINE L1 -2354 4072 3339 2358 101 0 19 chrX 92970718 92971036 -84003104 - AluSx SINE Alu 0 312 1 1906 244 70 100 chrX 92971036 92972201 -84001939 - L1MB8 LINE L1 -3087 3339 2253 978 189 13 60 chrX 92972201 92972434 -84001706 + MER46A DNA MER2_type 1 222 -14 1420 191 123 12 chrX 92972436 92972705 -84001435 - L1MCa LINE L1 -4182 2244 1910 2606 141 30 16 chrX 92972705 92973131 -84001009 + Tigger2a DNA MER2_type 3 434 0 1420 191 123 12 chrX 92973131 92973285 -84000855 - L1MCa LINE L1 -4516 1910 1774 43 81 0 0 chrX 92973878 92973977 -84000163 + AT_rich Low_complexity Low_complexity 1 99 0 1757 20 0 0 chrX 92974171 92974373 -83999767 - L1PA2 LINE L1 -4 6151 5950 6983 19 1 0 chrX 92974373 92975800 -83998340 + L1PA2 LINE L1 4527 5954 -201 1982 186 48 79 chrX 92975909 92976251 -83997889 - L1MCa LINE L1 -4737 1689 1379 1659 200 90 6 chrX 92976251 92976616 -83997524 + MSTD LTR MaLR 1 396 0 1982 186 48 79 chrX 92976616 92976981 -83997159 - L1MCa LINE L1 -5047 1379 1004 10945 174 21 1 chrX 92976981 92979895 -83994245 - L1PA15 LINE L1 -3 6162 3229 1575 167 16 22 chrX 92979950 92980267 -83993873 - THE1C LTR MaLR -57 318 4 4278 139 68 8 chrX 92980270 92980996 -83993144 - THE1C-int LTR MaLR 0 1580 812 * 6749 239 53 15 chrX 92980991 92982191 -83991949 - L1M4 LINE L1 -1169 4977 3823 234 91 0 0 chrX 92982191 92982224 -83991916 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 6749 239 53 15 chrX 92982224 92983314 -83990826 - L1M4 LINE L1 -2323 3823 2601 3290 204 41 6 chrX 92983314 92983979 -83990161 + MER76 LTR ERV 1 688 0 283 247 86 32 chrX 92985413 92985450 -83988690 + MIR3 SINE MIR 79 113 -95 2115 125 17 0 chrX 92985450 92985803 -83988337 - AluSx SINE Alu 0 312 1 283 247 86 32 chrX 92985803 92985858 -83988282 + MIR3 SINE MIR 113 176 -32 312 48 0 0 chrX 92985958 92986000 -83988140 + (CA)n Simple_repeat Simple_repeat 1 42 0 523 134 21 10 chrX 92987439 92987536 -83986604 + MER4A LTR ERV1 1 98 -566 1726 123 158 75 chrX 92987536 92987909 -83986231 + MER4A LTR ERV1 261 664 0 309 294 68 34 chrX 92987937 92988083 -83986057 - MIR3 SINE MIR -28 180 30 2599 112 6 8 chrX 92988359 92988724 -83985416 + THE1B LTR MaLR 1 364 0 11122 100 28 3 chrX 92988724 92990265 -83983875 + THE1B-int LTR MaLR 1 1580 0 2628 105 0 16 chrX 92990265 92990635 -83983505 + THE1B LTR MaLR 1 364 0 297 324 32 24 chrX 92991182 92991429 -83982711 + HERVL40 LTR ERVL 3699 3947 -1583 2062 148 26 0 chrX 92991768 92992072 -83982068 - AluSx SINE Alu 0 312 1 2974 223 53 42 chrX 92992081 92992963 -83981177 + HERVL40 LTR ERVL 1987 2878 -159 2225 213 42 51 chrX 92993201 92993473 -83980667 + MER76 LTR ERV 2 275 -413 1545 167 82 74 chrX 92993473 92993934 -83980206 + MLT1C LTR MaLR 1 465 -2 2225 213 42 51 chrX 92993934 92994286 -83979854 + MER76 LTR ERV 275 620 -68 793 172 40 20 chrX 92994277 92994537 -83979603 - MSTD LTR MaLR -71 325 3 * 547 211 17 0 chrX 92994537 92994708 -83979432 + L1MDa LINE L1 2522 2735 -3896 317 179 36 0 chrX 92994745 92994801 -83979339 - MER76 LTR ERV -2 686 629 1274 208 24 0 chrX 92994801 92995089 -83979051 - L1MDb LINE L1 -5357 1186 892 442 257 44 97 chrX 92995181 92995523 -83978617 - L1MDb LINE L1 -6200 340 17 2218 214 55 24 chrX 92995535 92996037 -83978103 - L1ME1 LINE L1 -229 6006 5521 2441 112 78 2 chrX 92996037 92996458 -83977682 - L1MA5A LINE L1 -4 6293 5841 2218 214 55 24 chrX 92996458 92996913 -83977227 - L1ME1 LINE L1 -714 5521 5020 338 127 0 16 chrX 92996918 92996981 -83977159 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 362 235 29 0 chrX 92997065 92997167 -83976973 - L1ME1 LINE L1 -4704 1692 1588 4681 231 61 9 chrX 92997215 92997438 -83976702 + L1M4 LINE L1 3575 3785 -2361 2066 189 19 24 chrX 92997438 92997851 -83976289 - LTR57 LTR ERVL 0 411 1 4681 231 61 9 chrX 92997851 92999109 -83975031 + L1M4 LINE L1 3785 5132 -1014 23 33 0 0 chrX 92999719 92999749 -83974391 + AT_rich Low_complexity Low_complexity 1 30 0 1706 199 0 7 chrX 92999850 93000156 -83973984 - AluJb SINE Alu -6 306 3 331 291 94 8 chrX 93000880 93000997 -83973143 + L2 LINE L2 3179 3305 -8 960 184 34 6 chrX 93001096 93001275 -83972865 - MER5A DNA MER1_type 0 189 6 222 257 100 29 chrX 93001491 93001561 -83972579 + MER5A DNA MER1_type 92 166 -23 * 301 198 86 37 chrX 93001508 93001589 -83972551 - MER5A DNA MER1_type -98 91 7 210 339 0 0 chrX 93001688 93001750 -83972390 + MIR SINE MIR 82 143 -65 313 250 98 18 chrX 93002332 93002444 -83971696 + L3 LINE CR1 664 784 -793 206 269 135 58 chrX 93002494 93002650 -83971490 + L3 LINE CR1 1191 1358 -219 1466 178 97 46 chrX 93003144 93003515 -83970625 - MLT1B LTR MaLR 0 390 1 234 283 62 53 chrX 93003784 93003897 -83970243 + MIR3 SINE MIR 89 202 -6 202 189 0 0 chrX 93007221 93007258 -83966882 + C-rich Low_complexity Low_complexity 1 37 0 217 167 0 62 chrX 93008224 93008272 -83965868 - L2 LINE L2 -6 3307 3263 726 318 180 20 chrX 93008586 93009030 -83965110 + L2 LINE L2 19 533 -2781 21 57 0 0 chrX 93059307 93059342 -83914798 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chrX 93059949 93059969 -83914171 + (TG)n Simple_repeat Simple_repeat 2 21 0 1667 183 14 7 chrX 93060346 93060641 -83913499 + AluJo SINE Alu 1 297 -15 1567 148 3 130 chrX 93060887 93061225 -83912915 - AluJb SINE Alu -7 295 1 844 114 15 23 chrX 93061343 93061475 -83912665 - AluSq/x SINE Alu -180 133 3 596 323 76 40 chrX 93062218 93062886 -83911254 - L1M4 LINE L1 -3340 2806 2115 23 0 0 0 chrX 93063567 93063590 -83910550 + AT_rich Low_complexity Low_complexity 1 23 0 251 278 80 43 chrX 93063747 93063934 -83910206 - L1MC/D LINE L1 -1984 5824 5631 291 71 0 0 chrX 93064377 93064419 -83909721 + (TG)n Simple_repeat Simple_repeat 1 42 0 2270 96 3 3 chrX 93064941 93065242 -83908898 - AluSc SINE Alu -8 301 1 239 321 12 0 chrX 93065993 93066077 -83908063 - L2 LINE L2 0 3313 3229 432 99 8 19 chrX 93066079 93066206 -83907934 - MER53 DNA DNA -2 187 18 10742 132 12 87 chrX 93067448 93069591 -83904549 - L1P LINE L1 -3816 2330 348 2147 216 65 17 chrX 93069680 93070260 -83903880 - L1MB8 LINE L1 0 6178 5571 763 236 46 9 chrX 93070256 93070486 -83903654 - L1MD3 LINE L1 -324 7597 7200 * 45071 38 1 1 chrX 93070623 93076769 -83897371 - L1PA4 LINE L1 0 6155 7 2559 146 41 9 chrX 93077811 93078230 -83895910 - MSTB1 LTR MaLR 0 432 1 247 286 93 36 chrX 93078747 93078887 -83895253 + L1ME LINE L1 5505 5652 -469 183 224 20 20 chrX 93079745 93079794 -83894346 + MER5B DNA MER1_type 1 49 -129 329 173 0 0 chrX 93080079 93080131 -83894009 + MER53 DNA DNA 1 52 -137 213 94 0 0 chrX 93080175 93080207 -83893933 + (TATG)n Simple_repeat Simple_repeat 2 33 0 1583 236 16 18 chrX 93080222 93080603 -83893537 - MLT2D LTR ERVL -34 380 1 398 153 14 0 chrX 93080603 93080674 -83893466 + MER53 DNA DNA 118 189 0 282 228 216 6 chrX 93080739 93080901 -83893239 + MLT1F LTR MaLR 290 485 -57 2987 25 8 17 chrX 93081248 93081605 -83892535 + L1PA4 LINE L1 5799 6152 -3 2416 88 0 0 chrX 93082012 93082308 -83891832 + AluSc SINE Alu 1 296 -13 201 196 78 0 chrX 93083441 93083492 -83890648 + MIR SINE MIR 119 173 -89 3847 228 32 27 chrX 93084529 93086152 -83887988 - L1ME1 LINE L1 -168 5998 4372 207 69 0 0 chrX 93086405 93086434 -83887706 + (TGG)n Simple_repeat Simple_repeat 1 29 0 1767 164 16 23 chrX 93086445 93086755 -83887385 - AluJo SINE Alu -4 308 1 239 93 23 0 chrX 93086842 93086885 -83887255 + (TATG)n Simple_repeat Simple_repeat 2 45 0 454 219 57 0 chrX 93087083 93087206 -83886934 - L1MC4 LINE L1 -823 7219 7090 462 208 17 11 chrX 93087206 93087388 -83886752 + CT-rich Low_complexity Low_complexity 1 183 0 1870 141 0 7 chrX 93087390 93087666 -83886474 - AluJb SINE Alu -38 274 1 689 237 10 20 chrX 93087683 93087881 -83886259 - L1MC4 LINE L1 -953 7089 6894 427 279 20 91 chrX 93088739 93088878 -83885262 + MER5A DNA MER1_type 7 130 -59 2627 46 3 0 chrX 93088878 93089182 -83884958 - AluY SINE Alu -6 305 1 427 279 20 91 chrX 93089182 93089239 -83884901 + MER5A DNA MER1_type 130 189 0 828 283 103 44 chrX 93089361 93090215 -83883925 - L2 LINE L2 0 3313 2403 651 225 12 23 chrX 93090413 93090586 -83883554 - MIR SINE MIR -11 251 81 260 305 99 21 chrX 93090705 93090846 -83883294 - MIR SINE MIR -99 163 12 245 241 65 65 chrX 93091191 93091299 -83882841 - MIR3 SINE MIR -88 120 13 1899 232 46 2 chrX 93091485 93091959 -83882181 - L1ME3A LINE L1 -251 5919 5425 581 206 92 37 chrX 93091992 93092359 -83881781 - L1MC5 LINE L1 -440 7531 7270 795 277 30 11 chrX 93092371 93092638 -83881502 - L1MC5 LINE L1 -733 7228 6957 228 188 29 29 chrX 93092677 93092746 -83881394 - L1MD3 LINE L1 -1268 6727 6659 714 206 136 0 chrX 93092916 93093071 -83881069 + MER3 DNA MER1_type 32 207 -2 186 43 0 0 chrX 93093083 93093106 -83881034 + (TTC)n Simple_repeat Simple_repeat 2 24 0 962 305 40 5 chrX 93093106 93093473 -83880667 - L1MD3 LINE L1 -1921 5887 5505 2203 126 0 3 chrX 93094935 93095236 -83878904 + AluSx SINE Alu 1 300 -12 198 0 0 0 chrX 93095236 93095258 -83878882 + (TA)n Simple_repeat Simple_repeat 2 23 0 930 225 94 74 chrX 93095634 93096092 -83878048 + MLT1C LTR MaLR 1 467 0 562 314 11 11 chrX 93096228 93096419 -83877721 - MIR SINE MIR -45 217 27 238 314 144 0 chrX 93097543 93097661 -83876479 - MIR SINE MIR -70 192 58 1589 61 28 5 chrX 93097950 93098163 -83875977 - MLT2A1 LTR ERVL -44 400 183 257 98 0 39 chrX 93098746 93098797 -83875343 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 253 104 83 0 chrX 93098799 93098847 -83875293 - Alu SINE Alu -7 295 244 2747 125 26 0 chrX 93099155 93099578 -83874562 + MER57B LTR ERV1 1 434 0 29 28 0 0 chrX 93100058 93100094 -83874046 + AT_rich Low_complexity Low_complexity 1 36 0 206 365 0 28 chrX 93100117 93100224 -83873916 - MIR SINE MIR -156 106 3 759 262 21 11 chrX 93100558 93100837 -83873303 + L1MC4a LINE L1 5620 5901 -1907 763 251 16 0 chrX 93100848 93101031 -83873109 - MER3 DNA MER1_type -4 205 20 21 57 0 0 chrX 93102807 93102842 -83871298 + AT_rich Low_complexity Low_complexity 1 35 0 1238 65 6 0 chrX 93103160 93103328 -83870812 + MLT2A1 LTR ERVL 1 169 -275 348 127 0 0 chrX 93104323 93104378 -83869762 + (CA)n Simple_repeat Simple_repeat 2 56 0 327 157 0 0 chrX 93104377 93104447 -83869693 + GA-rich Low_complexity Low_complexity 2 71 0 * 2207 131 55 0 chrX 93104725 93105069 -83869071 - THE1B LTR MaLR 0 364 2 309 277 97 45 chrX 93105589 93105744 -83868396 - MIR SINE MIR -8 254 92 11151 174 13 15 chrX 93107039 93109452 -83864688 + L1 LINE L1 2733 5141 -1005 216 178 0 0 chrX 93109823 93109868 -83864272 + (CA)n Simple_repeat Simple_repeat 1 45 0 1037 178 5 0 chrX 93110298 93110495 -83863645 + L1PB1 LINE L1 3 200 -6663 11865 147 85 4 chrX 93110495 93111777 -83862363 + L1PB1 LINE L1 634 1811 -5051 2460 62 3 37 chrX 93111777 93112099 -83862041 + AluY SINE Alu 1 311 0 11865 147 85 4 chrX 93112099 93112726 -83861414 + L1PB1 LINE L1 1811 2386 -4476 180 111 0 0 chrX 93112726 93112753 -83861387 + (TATG)n Simple_repeat Simple_repeat 1 27 0 11865 147 85 4 chrX 93112753 93114633 -83859507 + L1PB1 LINE L1 2386 4731 -2131 5626 119 57 2 chrX 93114724 93115217 -83858923 + L1PB1 LINE L1 5499 5964 -903 213 94 0 0 chrX 93115217 93115249 -83858891 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 5626 119 57 2 chrX 93115249 93115719 -83858421 + L1PB1 LINE L1 5964 6407 -460 239 0 32 0 chrX 93115719 93115750 -83858390 + (TA)n Simple_repeat Simple_repeat 2 33 0 5626 119 57 2 chrX 93115750 93116100 -83858040 + L1PB1 LINE L1 6407 6867 0 317 317 28 7 chrX 93116217 93116359 -83857781 + L1MC/D LINE L1 5679 5823 -1985 243 311 158 30 chrX 93117393 93117557 -83856583 + MIR SINE MIR 8 192 -70 2311 92 0 0 chrX 93117982 93118277 -83855863 + AluSx SINE Alu 1 295 -17 423 0 0 0 chrX 93118284 93118331 -83855809 + (CA)n Simple_repeat Simple_repeat 2 48 0 614 108 0 10 chrX 93118743 93118845 -83855295 + (TCCCC)n Simple_repeat Simple_repeat 4 104 0 192 40 0 0 chrX 93118840 93118865 -83855275 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 288 282 0 0 chrX 93119194 93119272 -83854868 - L1M2 LINE L1 -505 5786 5709 186 194 118 86 chrX 93120441 93120534 -83853606 - MIR SINE MIR -85 123 28 4160 146 19 1 chrX 93120665 93122023 -83852117 - L1PA15 LINE L1 -282 5883 4506 1958 100 41 0 chrX 93122170 93122486 -83851654 - AluSx SINE Alu 0 327 1 996 313 97 36 chrX 93122570 93123598 -83850542 + L1ME3A LINE L1 2890 3980 -2166 1138 247 84 33 chrX 93123675 93124027 -83850113 + L1ME3A LINE L1 5410 5795 -375 2257 105 0 0 chrX 93124027 93124322 -83849818 + AluSx SINE Alu 1 295 -17 1138 247 84 33 chrX 93124322 93124454 -83849686 + L1ME3A LINE L1 5795 5919 -251 6091 81 19 2 chrX 93124538 93125402 -83848738 - L1MA2 LINE L1 0 6304 5427 271 287 159 0 chrX 93126320 93126460 -83847680 - MIR SINE MIR -65 143 35 569 317 26 23 chrX 93127251 93127560 -83846580 - L2 LINE L2 -601 2713 2404 676 230 11 22 chrX 93127741 93127919 -83846221 - MIR SINE MIR -6 256 81 425 294 82 7 chrX 93128019 93128165 -83845975 - MIR SINE MIR -98 164 8 997 232 12 0 chrX 93128541 93128787 -83845353 - L1ME LINE L1 -509 5661 5413 481 237 77 10 chrX 93128850 93129044 -83845096 - L1MC5 LINE L1 -492 7469 7263 24 53 0 0 chrX 93129734 93129772 -83844368 + AT_rich Low_complexity Low_complexity 1 38 0 936 214 117 77 chrX 93130399 93130843 -83843297 + MLT1C LTR MaLR 1 462 -5 558 333 6 6 chrX 93130944 93131127 -83843013 - MIR SINE MIR -54 208 26 254 229 14 0 chrX 93131400 93131470 -83842670 + GA-rich Low_complexity Low_complexity 4 74 0 2000 158 83 41 chrX 93131509 93131920 -83842220 - MSTA LTR MaLR 0 428 1 328 291 142 0 chrX 93132719 93132860 -83841280 - MIR SINE MIR -51 157 35 198 91 0 0 chrX 93134004 93134037 -83840103 + (TG)n Simple_repeat Simple_repeat 2 34 0 207 0 0 0 chrX 93134490 93134513 -83839627 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 258 311 134 0 chrX 93135071 93135190 -83838950 - MIR SINE MIR -70 192 58 300 270 9 81 chrX 93135356 93135467 -83838673 - L1MC/D LINE L1 -2053 5755 5653 262 252 58 19 chrX 93135736 93135891 -83838249 - L1MC/D LINE L1 -2333 5475 5315 360 333 46 6 chrX 93136239 93136413 -83837727 + MIR SINE MIR 75 255 -7 242 362 7 27 chrX 93138863 93139012 -83835128 - MIR SINE MIR -67 195 50 225 284 0 0 chrX 93139352 93139419 -83834721 - L1ME LINE L1 -564 5598 5532 441 0 0 0 chrX 93140138 93140187 -83833953 + (TCCA)n Simple_repeat Simple_repeat 2 50 0 590 319 11 11 chrX 93340899 93341087 -83633053 - MIR SINE MIR -48 214 27 21 36 0 0 chrX 93341165 93341193 -83632947 + AT_rich Low_complexity Low_complexity 1 28 0 619 195 90 114 chrX 93341862 93342271 -83631869 - L1MC5 LINE L1 -947 7014 6638 1012 193 0 38 chrX 93342351 93342563 -83631577 - AluJo SINE Alu -22 290 87 869 219 10 44 chrX 93342670 93342875 -83631265 + MER3 DNA MER1_type 8 205 -4 849 293 25 0 chrX 93342884 93343164 -83630976 - L1MC5 LINE L1 -1905 5903 5617 619 229 70 5 chrX 93344640 93344841 -83629299 - L1MDa LINE L1 -4310 2230 2017 2399 87 0 0 chrX 93344880 93345180 -83628960 + AluSg SINE Alu 1 300 -10 427 89 13 13 chrX 93345315 93345394 -83628746 + (TA)n Simple_repeat Simple_repeat 2 80 0 223 320 112 22 chrX 93345406 93345584 -83628556 + MIR SINE MIR 58 251 -11 209 256 116 35 chrX 93345919 93346005 -83628135 + MIR SINE MIR 40 132 -76 5791 139 15 18 chrX 93346571 93347497 -83626643 - MER49 LTR ERV1 0 923 1 200 172 0 31 chrX 93348213 93348277 -83625863 + GA-rich Low_complexity Low_complexity 2 63 0 265 307 148 6 chrX 93349134 93349305 -83624835 - MIR SINE MIR -40 168 1 1804 92 8 4 chrX 93350067 93350305 -83623835 - AluSq SINE Alu -19 294 56 22 0 0 0 chrX 93351793 93351815 -83622325 + AT_rich Low_complexity Low_complexity 1 22 0 16066 209 44 36 chrX 93351924 93353007 -83621133 - L1PA15 LINE L1 -7 7596 6524 2591 68 0 0 chrX 93353007 93353318 -83620822 - AluY SINE Alu 0 311 1 16066 209 44 36 chrX 93353318 93355466 -83618674 - L1PA15 LINE L1 -1079 6524 4396 1696 92 18 9 chrX 93355466 93355694 -83618446 + AluSg/x SINE Alu 70 299 -13 16066 209 44 36 chrX 93355694 93355856 -83618284 - L1PA15 LINE L1 -3207 4396 4237 1993 127 18 0 chrX 93355856 93356210 -83617930 - AluSx SINE Alu 0 359 1 16066 209 44 36 chrX 93356210 93357649 -83616491 - L1PA15 LINE L1 -3366 4237 2812 2191 129 0 0 chrX 93357649 93357958 -83616182 - AluSx SINE Alu -3 309 1 16066 209 44 36 chrX 93357958 93360394 -83613746 - L1PA15 LINE L1 -4791 2812 260 1052 186 34 42 chrX 93360679 93360916 -83613224 - MER106A DNA MER1_type -1 235 1 213 281 0 0 chrX 93360942 93360999 -83613141 + MIR SINE MIR 56 112 -150 247 253 55 11 chrX 93362033 93362124 -83612016 - L1ME4a LINE L1 -155 5966 5872 543 339 10 10 chrX 93362234 93362426 -83611714 - MIR SINE MIR -44 218 27 267 337 118 6 chrX 93362536 93362714 -83611426 - L2 LINE L2 -1389 1925 1728 521 253 0 37 chrX 93362778 93362940 -83611200 + L1MA9 LINE L1 6119 6274 -38 1461 158 0 38 chrX 93363019 93363284 -83610856 - AluJo SINE Alu -56 256 2 2585 47 0 0 chrX 93365099 93365396 -83608744 + AluY SINE Alu 1 297 -14 874 162 202 7 chrX 93366129 93366325 -83607815 - L1MB7 LINE L1 -71 6113 5872 2311 88 10 0 chrX 93366526 93366821 -83607319 - AluSp SINE Alu -15 298 1 1156 143 37 230 chrX 93366834 93367020 -83607120 - L1MC3 LINE L1 0 7785 7619 803 161 0 0 chrX 93367020 93367132 -83607008 - AluJb SINE Alu -27 285 174 1156 143 37 230 chrX 93367132 93367325 -83606815 - L1MC3 LINE L1 -166 7619 7390 557 209 92 0 chrX 93367349 93367502 -83606638 - L1MA4 LINE L1 -44 6256 6090 357 214 11 0 chrX 93367500 93367589 -83606551 + L1MA4 LINE L1 6027 6116 -184 * 505 161 49 0 chrX 93367589 93367670 -83606470 + MER45A DNA AcHobo 94 178 0 268 282 47 0 chrX 93367836 93367921 -83606219 - L2 LINE L2 -335 2978 2890 5186 164 107 5 chrX 93368575 93369622 -83604518 + L1PA16 LINE L1 1735 2888 -3975 292 223 110 29 chrX 93369580 93369752 -83604388 - L1 LINE L1 -3991 2872 2631 * 4420 205 35 14 chrX 93369735 93370786 -83603354 + L1 LINE L1 2880 3952 -2910 2152 120 42 63 chrX 93370787 93371170 -83602970 + THE1C LTR MaLR 1 375 0 11080 97 24 42 chrX 93371173 93372779 -83601361 + THE1B-int LTR MaLR 4 1580 0 2953 99 0 0 chrX 93372779 93373141 -83600999 + THE1B LTR MaLR 1 362 -2 2607 192 75 11 chrX 93373217 93375279 -83598861 + L1PA16 LINE L1 4647 6879 -3 1583 135 79 143 chrX 93375284 93375751 -83598389 + LTR23 LTR ERV1 1 437 0 2069 191 105 2 chrX 93375822 93376241 -83597899 + LTR24 LTR ERV1 6 467 0 4997 112 3 11 chrX 93376888 93377602 -83596538 + LTR17 LTR ERV1 1 708 -72 915 214 16 6 chrX 93380672 93380854 -83593286 - MER5A DNA MER1_type -5 184 1 292 324 68 20 chrX 93381137 93381285 -83592855 + MIR3 SINE MIR 6 160 -48 312 299 94 26 chrX 93381295 93381412 -83592728 - L2 LINE L2 -10 3262 3138 302 238 16 0 chrX 93381767 93381830 -83592310 + MER5B DNA MER1_type 59 122 -56 294 313 93 37 chrX 93381900 93382114 -83592026 - L2 LINE L2 -374 2940 2715 193 308 62 85 chrX 93382276 93382406 -83591734 + MIR3 SINE MIR 3 129 -79 266 234 58 78 chrX 93384033 93384187 -83589953 + LTR26E LTR ERV1 460 610 -12 1711 136 6 93 chrX 93384406 93384729 -83589411 - AluJb SINE Alu -11 301 7 234 250 0 16 chrX 93384731 93384795 -83589345 - MER65A LTR ERV1 -126 319 257 2350 74 10 10 chrX 93386154 93386451 -83587689 - AluSc SINE Alu -12 297 1 2221 207 82 13 chrX 93388297 93388761 -83585379 - LOR1a LTR ERV1 0 497 2 955 163 56 0 chrX 93388762 93388922 -83585218 - LOR1a-int LTR ERV1 -2 8118 7950 3242 215 54 62 chrX 93388940 93389969 -83584171 - LOR1a-int LTR ERV1 -273 7847 6063 713 313 86 24 chrX 93390407 93391152 -83582988 - HERV3 LTR ERV1 -2482 4414 3499 1918 159 64 15 chrX 93391959 93392286 -83581854 + MER61A LTR ERV1 1 343 0 294 297 130 73 chrX 93392602 93393148 -83580992 - L2 LINE L2 -494 2820 2244 387 0 0 0 chrX 93394756 93394799 -83579341 + (TG)n Simple_repeat Simple_repeat 2 44 0 314 294 6 136 chrX 93395576 93395753 -83578387 - LTR67 LTR ERVL -383 174 21 280 308 19 0 chrX 93395820 93395927 -83578213 + HERVL LTR ERVL 3867 3975 -1679 1026 309 110 32 chrX 93396111 93396849 -83577291 + HERVL LTR ERVL 4248 5042 -722 334 339 54 0 chrX 93398598 93398728 -83575412 + L2 LINE L2 2596 2732 -582 714 285 103 5 chrX 93399129 93399343 -83574797 - MIR SINE MIR -8 254 20 2233 111 0 0 chrX 93399587 93399884 -83574256 + AluSg SINE Alu 1 297 -13 224 292 62 35 chrX 93400178 93400291 -83573849 - L2 LINE L2 -291 2981 2866 1560 181 139 62 chrX 93400340 93400772 -83573368 - MLT1D LTR MaLR -29 476 12 458 294 51 15 chrX 93403159 93403356 -83570784 + HAL1 LINE L1 2273 2476 -31 461 310 62 25 chrX 93403611 93403853 -83570287 + MIR SINE MIR 1 251 -11 449 17 0 17 chrX 93404370 93404429 -83569711 + (TG)n Simple_repeat Simple_repeat 2 59 0 2413 98 0 0 chrX 93404827 93405132 -83569008 - AluSx SINE Alu -7 305 1 241 264 99 115 chrX 93405407 93405589 -83568551 + MIR3 SINE MIR 3 181 -27 1099 281 173 32 chrX 93405868 93406544 -83567596 - L3 LINE CR1 -653 924 154 1687 142 29 11 chrX 93407730 93408011 -83566129 + MER49 LTR ERV1 1 286 -637 1144 251 65 41 chrX 93408022 93408360 -83565780 + MER4D LTR ERV1 528 856 -47 2557 68 0 6 chrX 93408360 93408671 -83565469 + AluSc SINE Alu 1 309 0 234 0 0 0 chrX 93408672 93408698 -83565442 + (TA)n Simple_repeat Simple_repeat 2 27 0 1144 251 65 41 chrX 93408698 93408724 -83565416 + MER4D LTR ERV1 855 903 0 1604 102 23 0 chrX 93409448 93409663 -83564477 + AluSg/x SINE Alu 85 304 -8 3843 145 88 74 chrX 93409839 93410404 -83563736 - LOR1-int LTR ERV1 -2577 4021 3465 2244 55 11 11 chrX 93410404 93410676 -83563464 - L1PA11 LINE L1 0 6174 5903 3843 145 88 74 chrX 93410676 93411575 -83562565 - LOR1-int LTR ERV1 -3133 3465 2580 328 111 0 0 chrX 93411575 93411620 -83562520 - MADE1 DNA Mariner -34 46 2 3843 145 88 74 chrX 93411620 93411767 -83562373 - LOR1-int LTR ERV1 -4018 2580 1147 444 228 138 24 chrX 93411802 93411925 -83562215 + MER5B DNA MER1_type 6 142 -36 314 326 79 17 chrX 93411925 93412103 -83562037 + L1MEc LINE L1 35 223 -6173 1672 271 48 12 chrX 93412105 93412621 -83561519 + L1MEc LINE L1 288 822 -5574 1789 194 167 16 chrX 93412621 93413069 -83561071 - MLT1E2 LTR MaLR 0 626 111 331 236 91 36 chrX 93413214 93413324 -83560816 + MIR SINE MIR 103 218 -44 230 303 13 13 chrX 93413324 93413400 -83560740 - MIR SINE MIR -156 106 31 27 0 0 0 chrX 93413493 93413520 -83560620 + AT_rich Low_complexity Low_complexity 1 27 0 240 319 143 8 chrX 93414498 93414617 -83559523 - MIR SINE MIR -70 192 58 2551 119 57 38 chrX 93414988 93415408 -83558732 + MSTA LTR MaLR 1 428 0 258 56 0 0 chrX 93416309 93416345 -83557795 + (TG)n Simple_repeat Simple_repeat 2 37 0 2226 70 54 7 chrX 93417753 93418051 -83556089 - L1PA11 LINE L1 -2 6172 5861 9935 157 11 24 chrX 93418052 93418634 -83555506 - L1P LINE L1 -2389 3757 3168 234 0 0 0 chrX 93418634 93418660 -83555480 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 9935 157 11 24 chrX 93418660 93418738 -83555402 - L1P LINE L1 -2978 3168 3090 225 0 0 0 chrX 93418738 93418763 -83555377 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9935 157 11 24 chrX 93418763 93419915 -83554225 - L1P LINE L1 -3056 3090 1969 45217 38 1 1 chrX 93419917 93426074 -83548066 - L1PA3 LINE L1 0 6155 2 3208 56 5 0 chrX 93426081 93426476 -83547664 - L1PA7 LINE L1 -50 6104 5708 9425 85 0 2 chrX 93426918 93428927 -83545213 + L1PA6 LINE L1 4124 6151 -3 2553 68 3 0 chrX 93429459 93429769 -83544371 + AluY SINE Alu 1 311 0 564 236 148 44 chrX 93429777 93429980 -83544160 + MIR SINE MIR 29 252 -10 2429 179 39 7 chrX 93430510 93430923 -83543217 + MSTB LTR MaLR 1 426 0 6893 89 11 2 chrX 93432080 93433347 -83540793 + L1PA10 LINE L1 4890 6163 -5 376 315 74 15 chrX 93433352 93433555 -83540585 + L1M4 LINE L1 2927 3141 -3005 5781 146 46 48 chrX 93433759 93433779 -83540361 - L1MA4 LINE L1 0 6300 6281 1731 142 59 9 chrX 93433779 93434116 -83540024 - L1MA8 LINE L1 -3 6288 5935 5781 146 46 48 chrX 93434116 93434615 -83539525 - L1MA4 LINE L1 -19 6281 5783 252 77 0 0 chrX 93434615 93434654 -83539486 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 5781 146 46 48 chrX 93434654 93435776 -83538364 - L1MA4 LINE L1 -517 5783 4661 2523 68 3 0 chrX 93435776 93436084 -83538056 - AluY SINE Alu -2 309 1 5781 146 46 48 chrX 93436084 93436481 -83537659 - L1MA4 LINE L1 -1639 4661 4264 1822 155 14 0 chrX 93436481 93436778 -83537362 + AluSx SINE Alu 1 301 -11 5781 146 46 48 chrX 93436778 93436820 -83537320 - L1MA4 LINE L1 -2036 4264 4223 307 210 10 90 chrX 93436881 93436981 -83537159 - L1MC4 LINE L1 -1339 6703 6612 215 173 49 0 chrX 93436989 93437070 -83537070 + (TA)n Simple_repeat Simple_repeat 1 85 0 240 35 0 0 chrX 93437086 93437115 -83537025 + (CA)n Simple_repeat Simple_repeat 2 30 0 4071 169 3 12 chrX 93437119 93437572 -83536568 - L1MA4 LINE L1 -1913 4233 3788 2173 114 3 0 chrX 93437572 93437862 -83536278 - AluSc SINE Alu -18 291 1 4071 169 3 12 chrX 93437862 93438131 -83536009 - L1MA4 LINE L1 -2358 3788 3518 2356 81 9 16 chrX 93438132 93438453 -83535687 - L1PA8 LINE L1 -6 6166 5848 281 267 133 0 chrX 93438453 93438573 -83535567 - MLT1D LTR MaLR -369 136 1 1814 225 49 69 chrX 93438577 93438944 -83535196 - MLT1D-int LTR MaLR -4 1367 1011 2217 119 0 3 chrX 93438944 93439246 -83534894 + AluSx SINE Alu 2 302 -10 1814 225 49 69 chrX 93439246 93439385 -83534755 - MLT1D-int LTR MaLR -360 1011 871 1094 275 11 14 chrX 93439461 93439737 -83534403 - MLT1D-int LTR MaLR -487 884 610 6860 216 44 6 chrX 93439741 93440751 -83533389 - L1 LINE L1 -756 5390 4293 1731 176 3 24 chrX 93440751 93441047 -83533093 - AluJo SINE Alu -22 290 1 6860 216 44 6 chrX 93441047 93441676 -83532464 - L1 LINE L1 -1853 4293 3689 10728 123 25 56 chrX 93441699 93441766 -83532374 - Tigger1 DNA MER2_type -105 2313 2245 2548 62 7 0 chrX 93441766 93442073 -83532067 + AluY SINE Alu 1 309 -2 10728 123 25 56 chrX 93442073 93442280 -83531860 - Tigger1 DNA MER2_type -173 2245 2033 672 191 0 29 chrX 93442280 93442416 -83531724 + FLAM_A SINE Alu 1 132 -1 2270 94 3 3 chrX 93442425 93442723 -83531417 - AluY SINE Alu -13 298 1 10728 123 25 56 chrX 93442723 93443062 -83531078 - Tigger1 DNA MER2_type -393 2025 1677 2194 105 0 0 chrX 93443062 93443348 -83530792 - AluSg SINE Alu -24 286 1 10728 123 25 56 chrX 93443348 93444486 -83529654 - Tigger1 DNA MER2_type -741 1677 588 1964 115 0 0 chrX 93444486 93444747 -83529393 - AluSg SINE Alu -49 261 1 10728 123 25 56 chrX 93444747 93444849 -83529291 - Tigger1 DNA MER2_type -1830 588 484 2096 136 0 7 chrX 93444849 93445158 -83528982 - AluSx SINE Alu -5 307 1 2307 186 16 47 chrX 93445158 93445553 -83528587 + L1ME4a LINE L1 4802 5148 -1030 2262 112 0 3 chrX 93445553 93445856 -83528284 - AluSx SINE Alu -10 302 1 2307 186 16 47 chrX 93445856 93446303 -83527837 + L1ME4a LINE L1 5148 5607 -571 1392 219 16 9 chrX 93446311 93446631 -83527509 + L1MB8 LINE L1 5851 6172 -6 1874 146 3 17 chrX 93446650 93446945 -83527195 + AluSx SINE Alu 1 291 -21 423 0 0 0 chrX 93446954 93447001 -83527139 + (CA)n Simple_repeat Simple_repeat 2 48 0 262 143 0 20 chrX 93447148 93447197 -83526943 + (GA)n Simple_repeat Simple_repeat 1 48 0 480 33 11 54 chrX 93447198 93447290 -83526850 + (GAA)n Simple_repeat Simple_repeat 3 90 0 22 0 0 0 chrX 93448913 93448935 -83525205 + GC_rich Low_complexity Low_complexity 1 22 0 365 234 70 78 chrX 93450237 93450494 -83523646 + L1ME4a LINE L1 5793 6047 -74 2880 100 28 57 chrX 93450570 93451041 -83523099 + L1PA14 LINE L1 5705 6161 0 203 365 27 0 chrX 93451363 93451437 -83522703 + MIR SINE MIR 31 106 -102 405 265 97 76 chrX 93451486 93451671 -83522469 + MER5A DNA MER1_type 1 189 0 272 51 0 0 chrX 93451698 93451737 -83522403 - AluY SINE Alu -4 297 259 1823 55 0 5 chrX 93451739 93451957 -83522183 - AluY SINE Alu -94 217 1 2169 222 59 55 chrX 93452297 93452842 -83521298 + MLT1E LTR MaLR 47 593 0 290 203 38 13 chrX 93452843 93452922 -83521218 - L1MC5 LINE L1 -242 7719 7639 396 0 0 0 chrX 93452944 93452988 -83521152 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 405 0 0 0 chrX 93452987 93453032 -83521108 + (GA)n Simple_repeat Simple_repeat 2 46 0 2124 103 7 0 chrX 93453033 93453305 -83520835 - AluSq SINE Alu -35 278 5 2170 91 42 0 chrX 93453723 93454009 -83520131 + AluSg SINE Alu 7 304 -6 1177 220 59 39 chrX 93454274 93454611 -83519529 - MER2 DNA MER2_type 0 344 1 743 232 77 0 chrX 93455416 93455584 -83518556 + MER63A DNA MER1_type 1 181 -29 206 121 0 0 chrX 93455797 93455830 -83518310 + (TG)n Simple_repeat Simple_repeat 1 33 0 454 294 7 43 chrX 93455899 93456107 -83518033 + MIR SINE MIR 2 260 -2 689 244 34 79 chrX 93456264 93456555 -83517585 + MER102a DNA MER1_type 44 321 -9 1358 184 66 7 chrX 93456664 93456968 -83517172 + MER33 DNA MER1_type 1 322 -2 362 251 86 82 chrX 93457059 93457242 -83516898 - L1ME4a LINE L1 -68 6053 5867 2525 78 0 0 chrX 93457242 93457549 -83516591 + AluY SINE Alu 1 307 -4 362 251 86 82 chrX 93457549 93457608 -83516532 - L1ME4a LINE L1 -254 5867 5810 1663 186 69 39 chrX 93457978 93458339 -83515801 - MLT1A2 LTR MaLR -2 372 1 267 294 266 5 chrX 93458419 93458603 -83515537 - MIR SINE MIR -6 256 25 428 276 126 40 chrX 93458628 93458802 -83515338 + L1ME LINE L1 5498 5640 -481 546 246 34 64 chrX 93459059 93459295 -83514845 - MLT1L LTR MaLR -17 598 370 180 0 0 0 chrX 93459778 93459798 -83514342 + (GA)n Simple_repeat Simple_repeat 2 21 0 612 311 87 22 chrX 93460586 93460676 -83513464 + L2 LINE L2 2606 2689 -583 2087 119 3 10 chrX 93460676 93460971 -83513169 - AluSc SINE Alu -16 293 1 612 311 87 22 chrX 93460971 93461285 -83512855 + L2 LINE L2 2689 3029 -243 2360 99 120 67 chrX 93461292 93461757 -83512383 + LTR21A LTR ERV1 1 490 -15 524 84 0 0 chrX 93461757 93461828 -83512312 + HERVFH21 LTR ERV1 5 75 -6454 2168 181 24 20 chrX 93461828 93462282 -83511858 + L1MCc LINE L1 62 1037 -5904 2140 108 4 0 chrX 93462287 93462588 -83511552 + AluSg SINE Alu 1 302 0 15167 158 20 22 chrX 93462588 93463353 -83510787 + L1MA3 LINE L1 2666 3431 -4293 2522 60 0 0 chrX 93463353 93463651 -83510489 - AluY SINE Alu -13 298 1 15167 158 20 22 chrX 93463651 93464566 -83509574 + L1MA3 LINE L1 3431 4347 -3377 2396 91 3 3 chrX 93464566 93464875 -83509265 + AluY SINE Alu 1 309 -2 15167 158 20 22 chrX 93464875 93466050 -83508090 + L1MA3 LINE L1 4347 5523 -2201 2343 113 153 5 chrX 93466050 93466423 -83507717 - MSTA LTR MaLR 0 428 1 15167 158 20 22 chrX 93466423 93467113 -83507027 + L1MA3 LINE L1 5523 6213 -1511 2228 97 0 3 chrX 93467113 93467401 -83506739 + AluSx SINE Alu 9 295 -17 15167 158 20 22 chrX 93467401 93468921 -83505219 + L1MA3 LINE L1 6213 7724 0 2597 227 67 12 chrX 93468932 93470288 -83503852 + L1MCc LINE L1 2257 3685 -3256 * 4925 179 9 14 chrX 93470278 93471908 -83502232 + L1PB4 LINE L1 4533 6153 -3 5514 210 35 14 chrX 93471915 93472339 -83501801 + L1 LINE L1 2113 2526 -3620 2161 73 0 0 chrX 93472339 93472598 -83501542 + AluSc SINE Alu 39 297 -12 5514 210 35 14 chrX 93472598 93473556 -83500584 + L1 LINE L1 2526 3525 -2621 2307 65 0 0 chrX 93473552 93473831 -83500309 - L1PA8 LINE L1 -501 5671 5393 * 1627 99 13 0 chrX 93473830 93474063 -83500077 + L1PA8 LINE L1 5666 5901 -271 * 1086 207 72 8 chrX 93474077 93474314 -83499826 + MLT1C LTR MaLR 216 467 0 2094 132 10 10 chrX 93474502 93474813 -83499327 - AluSx SINE Alu -1 311 1 230 329 35 0 chrX 93475195 93475280 -83498860 + MIR SINE MIR 98 185 -77 1839 155 117 39 chrX 93475940 93476507 -83497633 + MER4A LTR ERV1 1 465 0 2556 55 0 6 chrX 93476698 93477009 -83497131 - AluY SINE Alu -2 309 1 371 276 73 83 chrX 93477441 93477604 -83496536 - MIR SINE MIR -72 190 28 1587 175 43 7 chrX 93477604 93477884 -83496256 - AluJo SINE Alu -22 290 1 371 276 73 83 chrX 93477884 93477912 -83496228 - MIR SINE MIR -234 28 1 492 211 196 30 chrX 93478278 93478477 -83495663 - MIR SINE MIR -17 245 14 1134 193 19 0 chrX 93484428 93484635 -83489505 - AluJb SINE Alu -18 294 84 282 333 43 0 chrX 93484801 93484918 -83489222 + MIR SINE MIR 57 178 -84 2397 84 7 0 chrX 93485079 93485388 -83488752 + AluY SINE Alu 1 311 0 678 128 0 0 chrX 93485474 93485568 -83488572 - AluS SINE Alu -217 95 2 22 0 0 0 chrX 93485574 93485596 -83488544 + AT_rich Low_complexity Low_complexity 1 22 0 1894 55 42 4 chrX 93485604 93485840 -83488300 + AluY SINE Alu 9 253 -58 362 270 121 42 chrX 93485858 93486343 -83487797 + L1MEc LINE L1 2023 2504 -3711 1263 169 172 55 chrX 93490774 93491082 -83483058 - MER2 DNA MER2_type 0 344 1 2550 68 0 0 chrX 93491161 93491469 -83482671 + AluY SINE Alu 1 308 -3 571 254 124 34 chrX 93491806 93492129 -83482011 + L1MEc LINE L1 2479 2830 -3385 1630 163 2 49 chrX 93493371 93493883 -83480257 + pTR5 LTR ERV1 732 1268 -1170 688 230 0 8 chrX 93493883 93494009 -83480131 - MSTC LTR MaLR -303 125 1 964 88 0 0 chrX 93494067 93494192 -83479948 + AluSq/x SINE Alu 1 125 -188 1362 169 117 72 chrX 93494242 93494644 -83479496 - LTR23-int LTR ERV1 -1837 4494 4075 703 186 82 25 chrX 93494671 93495130 -83479010 - LTR23-int LTR ERV1 -2378 2573 1815 2919 121 21 33 chrX 93495141 93495744 -83478396 + MER4B LTR ERV1 1 766 0 6300 51 14 14 chrX 93495856 93496636 -83477504 + LTR17 LTR ERV1 1 780 0 31 58 0 0 chrX 93496672 93496724 -83477416 + AT_rich Low_complexity Low_complexity 1 52 0 3561 150 15 14 chrX 93496806 93496881 -83477259 + LTR49 LTR ERV1 1 74 -521 2628 85 65 0 chrX 93496881 93497235 -83476905 + MER51B LTR ERV1 1 377 0 3561 150 15 14 chrX 93497235 93497753 -83476387 + LTR49 LTR ERV1 74 595 0 3070 161 36 125 chrX 93498204 93499010 -83475130 - MER50 LTR ERV1 0 734 1 558 233 43 43 chrX 93499446 93499609 -83474531 - LTR57-int LTR ERVL -3907 1436 1274 * 1023 228 147 61 chrX 93499465 93499956 -83474184 - LTR23-int LTR ERV1 -3363 1760 1228 587 265 112 15 chrX 93500021 93500217 -83473923 - MER34C LTR ERV1 -211 374 160 436 237 36 29 chrX 93500219 93500255 -83473885 - LTR23-int LTR ERV1 -4133 990 956 1474 189 27 0 chrX 93500255 93500551 -83473589 - AluJo SINE Alu -8 304 1 436 237 36 29 chrX 93500551 93500653 -83473487 - LTR23-int LTR ERV1 -4167 956 851 4714 40 45 0 chrX 93501016 93501571 -83472569 + LTR19B LTR ERV1 1 580 0 1950 128 3 0 chrX 93501689 93501978 -83472162 + AluSx SINE Alu 1 290 -22 740 176 84 21 chrX 93502007 93502149 -83471991 + FRAM SINE Alu 1 151 -25 2371 64 0 0 chrX 93502192 93502490 -83471650 - AluY SINE Alu -13 298 1 1998 138 0 7 chrX 93502610 93502915 -83471225 - AluSq SINE Alu -10 303 1 280 226 0 0 chrX 93503248 93503301 -83470839 - LTR23-int LTR ERV1 -6927 610 558 10766 38 5 67 chrX 93503306 93504776 -83469364 - SVA Other Other 0 1386 8 1267 174 82 35 chrX 93504777 93505059 -83469081 - AluJo SINE Alu -17 295 1 2389 83 0 3 chrX 93505139 93505451 -83468689 + AluY SINE Alu 1 311 0 253 253 11 115 chrX 93505526 93505700 -83468440 - LTR23-int LTR ERV1 -7055 482 327 7306 127 134 92 chrX 93505722 93507372 -83466768 - pTR5 LTR ERV1 0 2438 375 573 254 14 7 chrX 93507537 93507675 -83466465 - LTR23-int LTR ERV1 -4188 2143 2005 2015 182 27 100 chrX 93507699 93508142 -83465998 - LTR54 LTR ERV1 0 510 113 2066 107 7 0 chrX 93508142 93508432 -83465708 + AluSx SINE Alu 1 292 -20 2015 182 27 100 chrX 93508432 93508538 -83465602 - LTR54 LTR ERV1 -397 113 1 195 327 0 18 chrX 93508548 93508603 -83465537 + L2 LINE L2 3009 3062 -251 7321 67 134 48 chrX 93508636 93509802 -83464338 - MER11A LTR ERVK 0 1266 1 2050 210 94 75 chrX 93509833 93509981 -83464159 + MER50 LTR ERV1 10 154 -580 2371 74 0 0 chrX 93509981 93510277 -83463863 - AluY SINE Alu -15 296 1 2050 210 94 75 chrX 93510277 93510839 -83463301 + MER50 LTR ERV1 154 734 0 21 71 0 0 chrX 93511254 93511296 -83462844 + AT_rich Low_complexity Low_complexity 1 42 0 1702 120 10 35 chrX 93511380 93511666 -83462474 + LTR8 LTR ERV1 310 600 -127 2399 143 3 26 chrX 93511684 93512075 -83462065 + LTR8 LTR ERV1 310 691 0 3059 128 52 77 chrX 93512081 93512269 -83461871 + MER4D LTR ERV1 264 128 -482 2055 79 0 4 chrX 93512269 93512535 -83461605 - AluSc SINE Alu -11 298 34 3059 128 52 77 chrX 93512535 93513007 -83461133 + MER4D LTR ERV1 127 610 0 312 250 0 28 chrX 93513007 93513076 -83461064 + MER90 LTR ERV1 509 575 0 4781 91 118 8 chrX 93514555 93515258 -83458882 - LTR17 LTR ERV1 0 780 1 1637 70 0 5 chrX 93515637 93515850 -83458290 - pTR5 LTR ERV1 -2046 392 181 377 227 36 54 chrX 93515850 93515961 -83458179 - LTR30 LTR ERV1 -80 642 375 5625 115 73 65 chrX 93515961 93517085 -83457055 - pTR5 LTR ERV1 -413 2025 741 717 206 15 0 chrX 93517135 93517266 -83456874 + FLAM_A SINE Alu 1 133 0 180 135 0 0 chrX 93517409 93517446 -83456694 + (TG)n Simple_repeat Simple_repeat 2 38 0 2187 100 0 0 chrX 93517596 93517905 -83456235 + AluY SINE Alu 1 309 -2 5693 145 7 40 chrX 93518146 93519135 -83455005 - L1PB3 LINE L1 -2 6152 5236 2760 70 0 0 chrX 93519135 93519479 -83454661 - LTR14A LTR ERVK 0 344 1 5693 145 7 40 chrX 93519479 93520018 -83454122 - L1PB3 LINE L1 -918 5236 4681 183 288 45 0 chrX 93520727 93520793 -83453347 - MIR SINE MIR -72 190 122 235 229 0 21 chrX 93520861 93520909 -83453231 + MIR SINE MIR 22 68 -140 814 145 0 0 chrX 93521316 93521433 -83452707 + FLAM_C SINE Alu 1 117 -16 2322 83 0 3 chrX 93521468 93521770 -83452370 + AluY SINE Alu 1 301 -10 2229 102 0 0 chrX 93522116 93522420 -83451720 + AluSx SINE Alu 1 304 -8 191 167 0 48 chrX 93522810 93522852 -83451288 - MER5B DNA MER1_type -124 54 15 279 277 73 100 chrX 93522926 93523146 -83450994 - MIR SINE MIR -10 252 39 262 296 96 15 chrX 93523302 93523437 -83450703 - MIR SINE MIR -57 205 60 326 326 88 11 chrX 93523971 93524152 -83449988 - MIR SINE MIR -12 250 56 738 244 13 30 chrX 93524179 93524413 -83449727 + MER106A DNA MER1_type 2 231 -5 180 0 0 0 chrX 93524601 93524621 -83449519 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2048 114 0 0 chrX 93524624 93524905 -83449235 - AluSx SINE Alu -31 281 1 2042 115 0 22 chrX 93525093 93525406 -83448734 - AluSx SINE Alu -6 306 1 2306 182 5 10 chrX 93525837 93526229 -83447911 + MER6A DNA MER2_type 3 392 -213 2289 160 92 2 chrX 93526229 93526622 -83447518 - MSTA LTR MaLR 0 428 1 1013 179 28 28 chrX 93526622 93526840 -83447300 + MER6A DNA MER2_type 388 605 0 355 263 6 56 chrX 93527223 93527383 -83446757 - L1ME LINE L1 -429 5692 5541 274 257 27 20 chrX 93527509 93527590 -83446550 + MIR SINE MIR 3 73 -135 245 143 0 0 chrX 93527876 93527911 -83446229 + 5S rRNA rRNA 1 35 -86 611 307 110 34 chrX 93528343 93528483 -83445657 - L1ME LINE L1 -1045 5101 4973 1647 166 7 29 chrX 93528483 93528791 -83445349 - AluJo SINE Alu -11 301 1 611 307 110 34 chrX 93528791 93529087 -83445053 - L1ME LINE L1 -1173 4973 4701 2423 62 3 0 chrX 93529087 93529392 -83444748 - AluY SINE Alu -5 306 1 611 307 110 34 chrX 93529392 93529957 -83444183 - L1ME LINE L1 -1445 4701 4023 2366 80 0 0 chrX 93530025 93530327 -83443813 + AluY SINE Alu 1 302 -9 691 227 0 0 chrX 93530351 93530479 -83443661 + FLAM_A SINE Alu 1 128 -5 1849 148 0 7 chrX 93530482 93530773 -83443367 + AluSx SINE Alu 1 289 -23 36 0 0 0 chrX 93530773 93530809 -83443331 + AT_rich Low_complexity Low_complexity 1 36 0 43735 50 1 0 chrX 93530865 93537001 -83437139 + L1PA4 LINE L1 13 6154 -1 320 311 72 40 chrX 93537001 93537268 -83436872 - L1ME LINE L1 -2201 3945 3667 1584 151 114 0 chrX 93537268 93537539 -83436601 - AluJo SINE Alu 0 302 1 270 306 11 82 chrX 93537592 93537785 -83436355 - L1ME LINE L1 -2577 3569 3399 1360 19 0 0 chrX 93537785 93537941 -83436199 - L1PA2 LINE L1 0 6155 6000 270 306 11 82 chrX 93537941 93538015 -83436125 - L1ME LINE L1 -2747 3399 3321 2107 67 3 57 chrX 93538079 93538393 -83435747 - AluSc SINE Alu -12 297 1 636 316 64 82 chrX 93538437 93538750 -83435390 - L1ME LINE L1 -3374 2772 2455 2230 59 0 21 chrX 93538750 93539063 -83435077 - AluY SINE Alu 0 307 1 636 316 64 82 chrX 93539063 93539364 -83434776 - L1ME LINE L1 -3691 2455 2168 1842 122 42 3 chrX 93539364 93539650 -83434490 - AluSx SINE Alu -15 297 1 636 316 64 82 chrX 93539650 93539708 -83434432 - L1ME LINE L1 -3978 2168 2110 300 338 76 0 chrX 93539859 93540016 -83434124 + L1MC/D LINE L1 5277 5445 -2363 31 0 0 0 chrX 93540042 93540073 -83434067 + AT_rich Low_complexity Low_complexity 1 31 0 196 326 49 49 chrX 93540137 93540281 -83433859 + MIR SINE MIR 68 211 -51 672 195 0 8 chrX 93540742 93540865 -83433275 + FLAM_C SINE Alu 5 126 -7 952 268 56 51 chrX 93540891 93541104 -83433036 + MLT1C LTR MaLR 24 146 -219 1851 142 0 40 chrX 93541104 93541427 -83432713 + AluJo SINE Alu 1 310 -2 952 268 56 51 chrX 93541427 93541647 -83432493 + MLT1C LTR MaLR 146 363 -2 472 318 10 65 chrX 93541704 93541774 -83432366 - MIR SINE MIR -44 218 146 2603 36 0 0 chrX 93541774 93542083 -83432057 - AluY SINE Alu -2 309 1 472 318 10 65 chrX 93542083 93542213 -83431927 - MIR SINE MIR -116 146 29 1383 175 3 21 chrX 93542613 93542899 -83431241 - AluJo SINE Alu -31 281 1 1990 101 45 3 chrX 93542940 93543227 -83430913 + AluSx SINE Alu 2 300 -12 1614 215 3 52 chrX 93543807 93544174 -83429966 + MLT1A2 LTR MaLR 11 359 -15 206 236 18 0 chrX 93544385 93544440 -83429700 + (TG)n Simple_repeat Simple_repeat 1 56 0 1197 151 9 18 chrX 93544636 93544854 -83429286 - LTR49 LTR ERV1 -379 216 1 21 57 0 0 chrX 93544887 93544922 -83429218 + AT_rich Low_complexity Low_complexity 1 35 0 913 26 34 0 chrX 93544929 93545046 -83429094 - AluY SINE Alu -20 291 171 1778 85 17 0 chrX 93545046 93545282 -83428858 + AluY SINE Alu 66 305 -6 447 285 90 70 chrX 93545290 93545834 -83428306 + L1MC4a LINE L1 4630 5184 -962 2213 126 10 0 chrX 93545902 93546211 -83427929 + AluSx SINE Alu 1 312 0 561 229 0 0 chrX 93546369 93546491 -83427649 + MLT1A2 LTR MaLR 384 505 0 1025 251 20 41 chrX 93546491 93546882 -83427258 + L1MC4a LINE L1 5559 5941 -1867 1268 271 48 28 chrX 93546906 93547556 -83426584 + L1MDa LINE L1 1 1219 -5321 1583 189 8 4 chrX 93547556 93547820 -83426320 + Tigger7 DNA MER2_type 3 267 -2220 533 171 0 76 chrX 93547821 93547926 -83426214 + Tigger7 DNA MER2_type 2390 2486 -1 717 196 68 90 chrX 93547950 93548027 -83426113 + L1MDa LINE L1 1259 1336 -5204 792 194 0 15 chrX 93548027 93548161 -83425979 - FLAM_A SINE Alu -1 132 1 717 196 68 90 chrX 93548161 93548186 -83425954 + L1MDa LINE L1 1336 1360 -5180 2078 165 31 53 chrX 93548186 93548604 -83425536 - MLT2D LTR ERVL -4 410 2 717 196 68 90 chrX 93548604 93548971 -83425169 + L1MDa LINE L1 1360 1879 -4661 4356 163 19 17 chrX 93548986 93549736 -83424404 + ERVL LTR ERVL 3880 4630 -1134 919 271 31 37 chrX 93549736 93550090 -83424050 + L1MC5 LINE L1 5556 5907 -1901 473 185 0 11 chrX 93550090 93550182 -83423958 - MER3 DNA MER1_type 0 209 119 927 243 44 85 chrX 93550261 93550779 -83423361 + L1MC5 LINE L1 6639 7135 -826 1683 181 0 27 chrX 93550792 93551100 -83423040 - AluJo SINE Alu 0 300 1 826 164 0 8 chrX 93551109 93551237 -83422903 - FLAM_C SINE Alu -16 127 1 6252 194 69 12 chrX 93551369 93552663 -83421477 - L1PA13 LINE L1 -5418 1369 2 1844 163 77 34 chrX 93552755 93552946 -83421194 - MLT1A1 LTR MaLR 0 365 184 2291 80 10 17 chrX 93552946 93553247 -83420893 - AluSc SINE Alu -10 299 1 1844 163 77 34 chrX 93553247 93553405 -83420735 - MLT1A1 LTR MaLR -181 184 1 248 253 148 14 chrX 93554772 93554889 -83419251 + MIR3 SINE MIR 3 140 -102 285 256 187 36 chrX 93554907 93555126 -83419014 + MER112 DNA MER1_type 2 253 -7 395 219 88 9 chrX 93555356 93555470 -83418670 + MIR SINE MIR 89 211 -51 201 291 0 18 chrX 93555667 93555722 -83418418 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 278 62 31 chrX 93555722 93555819 -83418321 - MER5A DNA MER1_type 0 189 90 279 196 10 59 chrX 93557201 93557303 -83416837 + C-rich Low_complexity Low_complexity 3 99 0 27 0 0 0 chrX 93557455 93557482 -83416658 + GC_rich Low_complexity Low_complexity 1 27 0 674 170 21 14 chrX 93558031 93558172 -83415968 + MER96B DNA MER1_type? 41 182 -235 2407 22 22 0 chrX 93558331 93558607 -83415533 - AluY SINE Alu -29 282 1 1649 230 73 36 chrX 93558642 93559246 -83414894 - L1MC5 LINE L1 -31 7930 7305 648 306 84 29 chrX 93559338 93559685 -83414455 - LTR16A1 LTR ERVL 0 457 92 1528 156 51 4 chrX 93559690 93559795 -83414345 + AluJo SINE Alu 13 112 -200 387 60 0 0 chrX 93559795 93559845 -83414295 + (CA)n Simple_repeat Simple_repeat 1 50 0 1528 156 51 4 chrX 93559845 93559995 -83414145 + AluJo SINE Alu 112 280 -32 562 238 25 0 chrX 93560048 93560170 -83413970 + MER45 DNA AcHobo 1 125 -1456 434 77 0 0 chrX 93560424 93560476 -83413664 + Alu SINE Alu 6 57 -261 296 238 63 0 chrX 93560539 93560602 -83413538 + MER39 LTR ERV1 4 70 -861 2365 82 7 0 chrX 93560704 93560997 -83413143 + AluY SINE Alu 1 295 -16 646 184 7 58 chrX 93560998 93561224 -83412916 + MER39 LTR ERV1 34 341 -366 1104 194 165 43 chrX 93561224 93561662 -83412478 - MER66A LTR ERV1 0 478 98 2593 187 16 113 chrX 93561701 93562371 -83411769 + MER21A LTR ERV1 210 814 -117 285 29 0 0 chrX 93562390 93562424 -83411716 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1229 102 51 0 chrX 93563005 93563182 -83410958 + AluSg/x SINE Alu 123 308 -2 2099 119 3 13 chrX 93563239 93563561 -83410579 + AluSx SINE Alu 1 312 0 2408 250 24 25 chrX 93563561 93564965 -83409175 + L1M4 LINE L1 2479 4435 -1711 1836 156 17 13 chrX 93564995 93565296 -83408844 + AluJo SINE Alu 1 302 -10 1261 232 36 33 chrX 93565297 93565841 -83408299 + L1M4c LINE L1 2125 2673 -3709 4816 225 29 46 chrX 93566883 93567219 -83406921 + L1M4c LINE L1 2656 2996 -3386 2270 91 0 13 chrX 93567219 93567517 -83406623 - AluY SINE Alu -17 294 1 4816 225 29 46 chrX 93567517 93568239 -83405901 + L1M4c LINE L1 2996 3686 -2696 2416 75 0 7 chrX 93568239 93568534 -83405606 + AluY SINE Alu 1 293 -18 4816 225 29 46 chrX 93568534 93568915 -83405225 + L1M4c LINE L1 3686 4072 -2310 1603 162 69 56 chrX 93568918 93569294 -83404846 + L1MB7 LINE L1 5743 6123 -61 819 173 0 0 chrX 93569294 93569427 -83404713 - AluSg/x SINE Alu -12 298 166 576 176 9 4 chrX 93569427 93569546 -83404594 - L1M4 LINE L1 -847 5299 5184 615 278 9 23 chrX 93569546 93569762 -83404378 - L1MC5 LINE L1 -1138 6823 6611 2399 71 3 0 chrX 93569883 93570178 -83403962 + AluY SINE Alu 1 296 -15 1140 124 0 0 chrX 93570178 93570356 -83403784 + (TA)n Simple_repeat Simple_repeat 2 179 0 1028 249 12 116 chrX 93570368 93570440 -83403700 - L1MC5 LINE L1 -1841 5967 5889 483 219 60 102 chrX 93570440 93570655 -83403485 + MER3 DNA MER1_type 4 209 0 1028 249 12 116 chrX 93570655 93570705 -83403435 - L1MC5 LINE L1 -1919 5889 5835 1772 173 0 0 chrX 93570705 93570989 -83403151 + AluJb SINE Alu 1 284 -28 1028 249 12 116 chrX 93570989 93571001 -83403139 - L1MC5 LINE L1 -1973 5835 5823 228 67 0 0 chrX 93571001 93571031 -83403109 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 1028 249 12 116 chrX 93571031 93571368 -83402772 - L1MC5 LINE L1 -1985 5823 5546 2662 171 27 25 chrX 93571368 93571853 -83402287 - MER66B LTR ERV1 0 486 1 1028 249 12 116 chrX 93571853 93571879 -83402261 - L1MC5 LINE L1 -2262 5546 5519 1802 143 10 0 chrX 93571983 93572276 -83401864 - L1MA4 LINE L1 -6 6294 5999 393 273 109 55 chrX 93572298 93572554 -83401586 - L1MC5 LINE L1 -789 5357 5088 1599 167 3 67 chrX 93572959 93573096 -83401044 + AluJo SINE Alu 1 110 -202 7560 57 0 8 chrX 93573096 93574311 -83399829 + L1PA5 LINE L1 4947 6154 0 1599 167 3 67 chrX 93574311 93574472 -83399668 + AluJo SINE Alu 110 280 -32 504 0 0 0 chrX 93574492 93574548 -83399592 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 239 77 0 26 chrX 93574549 93574588 -83399552 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 246 206 16 16 chrX 93575090 93575153 -83398987 - L1ME4a LINE L1 -177 5944 5882 209 108 27 0 chrX 93575266 93575303 -83398837 + (CA)n Simple_repeat Simple_repeat 2 39 0 212 0 36 0 chrX 93575303 93575331 -83398809 + (GA)n Simple_repeat Simple_repeat 2 30 0 2364 95 0 0 chrX 93575859 93576155 -83397985 - AluY SINE Alu -15 296 1 995 191 6 0 chrX 93576173 93576330 -83397810 - FAM SINE Alu -17 158 1 1758 193 0 0 chrX 93576335 93576636 -83397504 - AluJo SINE Alu -11 301 1 24 32 0 0 chrX 93576739 93576770 -83397370 + AT_rich Low_complexity Low_complexity 1 31 0 884 156 8 0 chrX 93576853 93576981 -83397159 - FLAM_C SINE Alu -4 129 1 221 263 81 30 chrX 93577295 93577394 -83396746 + MIR SINE MIR 89 192 -70 4019 169 30 14 chrX 93577737 93578476 -83395664 - L1MB3 LINE L1 -2 6181 5431 228 321 136 0 chrX 93578483 93578623 -83395517 + MIR SINE MIR 79 237 -25 220 339 73 18 chrX 93578853 93578962 -83395178 + MIR3 SINE MIR 8 122 -86 22 0 0 0 chrX 93579135 93579157 -83394983 + AT_rich Low_complexity Low_complexity 1 22 0 2003 94 54 60 chrX 93579157 93579270 -83394870 + L1MA8 LINE L1 5915 6027 -264 1970 107 30 40 chrX 93579270 93579568 -83394572 + AluSx SINE Alu 1 295 -17 2003 94 54 60 chrX 93579568 93579806 -83394334 + L1MA8 LINE L1 6027 6264 -27 3680 150 27 17 chrX 93579812 93580447 -83393693 + L1MA7 LINE L1 5634 6274 -17 817 197 34 132 chrX 93580448 93580864 -83393276 + L1MC5 LINE L1 6854 7228 -733 534 240 91 16 chrX 93580871 93581164 -83392976 + L1MC5 LINE L1 7223 7406 -402 183 42 0 0 chrX 93581199 93581223 -83392917 + (GA)n Simple_repeat Simple_repeat 2 25 0 1728 239 45 16 chrX 93581275 93581765 -83392375 + L1ME3A LINE L1 5416 5919 -251 2538 78 0 0 chrX 93582400 93582708 -83391432 + AluY SINE Alu 1 308 -3 186 359 19 9 chrX 93582734 93582840 -83391300 + MIR SINE MIR 55 161 -101 722 153 53 24 chrX 93582944 93583114 -83391026 + MIR SINE MIR 77 251 -11 759 195 14 122 chrX 93584229 93584633 -83389507 + L1MC4 LINE L1 6867 7225 -799 183 184 0 0 chrX 93584810 93584848 -83389292 + (CATA)n Simple_repeat Simple_repeat 2 39 0 3009 215 38 52 chrX 93585053 93585772 -83388368 + L1MD1 LINE L1 4525 5230 -936 2467 72 0 0 chrX 93585772 93585792 -83388348 - AluY SINE Alu -5 306 287 480 18 0 0 chrX 93585792 93585849 -83388291 + (TCTA)n Simple_repeat Simple_repeat 4 60 0 2467 72 0 0 chrX 93585849 93586132 -83388008 - AluY SINE Alu -23 288 3 3009 215 38 52 chrX 93586132 93586451 -83387689 + L1MD1 LINE L1 5230 5552 -614 1019 48 0 0 chrX 93586451 93586576 -83387564 + AluY SINE Alu 176 300 -11 346 211 56 117 chrX 93586584 93586797 -83387343 + L1MD1 LINE L1 5894 6093 -149 321 244 39 87 chrX 93586735 93586862 -83387278 + L1MA10 LINE L1 6172 6292 -42 * 353 250 23 0 chrX 93587803 93587891 -83386249 + L1ME LINE L1 5501 5590 -531 260 317 83 7 chrX 93588135 93588280 -83385860 - MIR SINE MIR -57 205 50 2655 166 29 29 chrX 93588377 93588866 -83385274 + LTR22B LTR ERVK 1 489 -3 291 317 97 16 chrX 93589346 93589532 -83384608 - MIR SINE MIR -12 250 50 986 214 21 29 chrX 93589552 93589790 -83384350 + MER106A DNA MER1_type 1 236 0 25 0 0 0 chrX 93590074 93590099 -83384041 + AT_rich Low_complexity Low_complexity 1 25 0 2480 61 0 0 chrX 93590166 93590462 -83383678 - AluY SINE Alu -15 296 1 428 299 8 0 chrX 93590684 93590811 -83383329 + MIR SINE MIR 25 152 -110 2613 58 0 0 chrX 93590818 93591129 -83383011 + AluY SINE Alu 1 311 0 899 256 42 36 chrX 93591392 93591864 -83382276 + L1MDa LINE L1 2079 2553 -3987 2265 276 62 34 chrX 93591884 93592645 -83381495 + MER21B LTR ERV1 13 794 -69 1061 250 39 33 chrX 93592694 93592992 -83381148 - L1M4 LINE L1 -3561 2585 2283 1654 160 45 77 chrX 93592992 93593367 -83380773 + MLT1A1 LTR MaLR 3 365 0 1061 250 39 33 chrX 93593367 93593432 -83380708 - L1M4 LINE L1 -3863 2283 2220 249 181 56 14 chrX 93593460 93593532 -83380608 - L1P5 LINE L1 -717 5434 5360 981 160 12 0 chrX 93593535 93593704 -83380436 - AluJb SINE Alu -23 289 137 288 261 36 80 chrX 93593903 93594041 -83380099 - L1ME LINE L1 -522 5599 5468 459 298 43 0 chrX 93594343 93594504 -83379636 + L1ME LINE L1 5529 5696 -425 2110 78 42 3 chrX 93594511 93594525 -83379615 - AluY SINE Alu -16 295 283 238 33 0 0 chrX 93594525 93594555 -83379585 + (TTG)n Simple_repeat Simple_repeat 1 180 0 2110 78 42 3 chrX 93594555 93594824 -83379316 - AluY SINE Alu -28 283 1 225 65 0 0 chrX 93594955 93594986 -83379154 + (GA)n Simple_repeat Simple_repeat 2 32 0 1706 168 0 65 chrX 93595385 93595694 -83378446 - AluJb SINE Alu -23 289 1 325 333 48 21 chrX 93595760 93595946 -83378194 + L1MC/D LINE L1 5630 5820 -1988 189 107 0 0 chrX 93596895 93596923 -83377217 + (A)n Simple_repeat Simple_repeat 1 28 0 2190 101 16 13 chrX 93596926 93597233 -83376907 + AluSg1 SINE Alu 1 308 -1 889 137 0 0 chrX 93597347 93597516 -83376624 - FLAM_C SINE Alu 0 169 1 253 338 108 0 chrX 93597957 93598090 -83376050 + MIR SINE MIR 44 191 -63 2553 42 7 3 chrX 93598891 93599197 -83374943 + AluY SINE Alu 2 308 -3 1219 246 68 25 chrX 93599230 93599807 -83374333 + LTR29 LTR ERV1 1 591 -4 1238 161 8 36 chrX 93599906 93600154 -83373986 + LTR1B LTR ERV1 1 241 -585 456 174 37 28 chrX 93600158 93600267 -83373873 + LTR1B LTR ERV1 717 826 0 1800 154 20 3 chrX 93600275 93600574 -83373566 + AluJb SINE Alu 1 304 -8 406 313 95 6 chrX 93600773 93600952 -83373188 - MER74B LTR ERVL -75 547 353 1293 234 47 17 chrX 93601130 93601429 -83372711 - MER74B LTR ERVL -254 368 61 2394 69 0 0 chrX 93601434 93601722 -83372418 + AluY SINE Alu 5 292 -19 459 0 0 0 chrX 93601734 93601785 -83372355 + (TG)n Simple_repeat Simple_repeat 2 52 0 2113 115 0 3 chrX 93601796 93602092 -83372048 + AluSg SINE Alu 1 295 -15 255 103 0 0 chrX 93602093 93602132 -83372008 + (CA)n Simple_repeat Simple_repeat 2 40 0 1690 92 116 63 chrX 93602669 93602792 -83371348 + AluSq SINE Alu 1 116 -197 2433 83 0 3 chrX 93602792 93603104 -83371036 + AluY SINE Alu 1 311 0 1690 92 116 63 chrX 93603104 93603264 -83370876 + AluSq SINE Alu 116 299 -14 230 352 40 16 chrX 93603457 93603582 -83370558 - MIR SINE MIR -79 183 56 203 188 0 16 chrX 93603589 93603653 -83370487 + (TA)n Simple_repeat Simple_repeat 2 64 0 359 308 38 0 chrX 93603653 93603812 -83370328 - L1M4 LINE L1 -1491 4655 4491 28 48 0 0 chrX 93603878 93603920 -83370220 + AT_rich Low_complexity Low_complexity 1 42 0 2110 110 4 0 chrX 93603996 93604297 -83369843 - AluSx SINE Alu 0 302 1 893 213 0 0 chrX 93604326 93604486 -83369654 - AluJb SINE Alu -17 295 136 2054 97 0 14 chrX 93604604 93604926 -83369214 + AluSx SINE Alu 1 318 0 1807 128 0 52 chrX 93605058 93605363 -83368777 - AluSx SINE Alu 0 312 24 544 305 19 29 chrX 93606033 93606243 -83367897 + L1MC4a LINE L1 5354 5561 -2247 604 255 37 33 chrX 93606246 93606433 -83367707 + MLT1D LTR MaLR 2 187 -318 2134 107 3 3 chrX 93606433 93606723 -83367417 + AluSc SINE Alu 1 290 -19 2012 72 30 4 chrX 93606727 93606990 -83367150 + AluSc SINE Alu 1 270 -39 604 255 37 33 chrX 93606990 93607040 -83367100 + MLT1D LTR MaLR 189 245 -260 523 90 45 0 chrX 93607050 93607139 -83367001 + GA-rich Low_complexity Low_complexity 1 93 0 1045 216 72 101 chrX 93607139 93607445 -83366695 + MLT1D LTR MaLR 171 505 0 227 184 0 0 chrX 93607445 93607483 -83366657 + L1MC4a LINE L1 5559 5596 -2212 501 282 55 18 chrX 93607486 93607759 -83366381 + L1MC4a LINE L1 5700 5982 -1826 * 5019 232 96 41 chrX 93607744 93608722 -83365418 + L1MDa LINE L1 1 924 -5616 2605 30 7 0 chrX 93608722 93609021 -83365119 - AluY SINE Alu -10 301 1 5019 232 96 41 chrX 93609021 93609396 -83364744 + L1MDa LINE L1 924 1277 -5263 762 194 0 8 chrX 93609396 93609525 -83364615 + FLAM_A SINE Alu 2 129 -4 5019 232 96 41 chrX 93609525 93610347 -83363793 + L1MDa LINE L1 1277 2250 -4290 315 214 126 19 chrX 93612429 93612532 -83361608 - MIR SINE MIR -50 212 99 27 39 0 19 chrX 93612643 93612662 -83361478 + AT_rich Low_complexity Low_complexity 1 19 -32 1457 142 57 79 chrX 93612662 93612978 -83361162 - AluJo SINE Alu -3 309 1 27 39 0 19 chrX 93612978 93613010 -83361130 + AT_rich Low_complexity Low_complexity 19 51 0 2313 83 27 0 chrX 93613039 93613340 -83360800 - AluY SINE Alu -2 309 1 498 76 0 0 chrX 93613489 93613555 -83360585 + Alu SINE Alu 238 303 -7 181 231 0 39 chrX 93614881 93614933 -83359207 + L2 LINE L2 2234 2283 -1031 516 292 45 69 chrX 93615412 93615744 -83358396 + L2 LINE L2 2986 3309 -4 351 346 33 33 chrX 93615872 93616054 -83358086 - MER5A DNA MER1_type 0 189 8 1621 198 40 0 chrX 93616289 93616618 -83357522 + MER74A LTR ERVL 28 369 -189 618 105 12 0 chrX 93616617 93616703 -83357437 + HY4 scRNA scRNA 1 87 -6 * 505 241 0 0 chrX 93616715 93616827 -83357313 - L1 LINE L1 -3115 3031 2920 628 119 0 103 chrX 93616830 93616956 -83357184 - Tigger2a DNA MER2_type -311 123 11 2894 175 32 47 chrX 93616957 93617574 -83356566 + L1MB2 LINE L1 5555 6162 -9 1366 159 36 11 chrX 93617583 93617860 -83356280 + L1ME1 LINE L1 5304 5587 -575 551 53 0 13 chrX 93617860 93617936 -83356204 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 1203 83 30 12 chrX 93617936 93618105 -83356035 - AluSg/x SINE Alu -9 301 130 274 154 0 0 chrX 93618108 93618147 -83355993 - Alu SINE Alu -263 39 1 1244 220 47 57 chrX 93618148 93618393 -83355747 + L1ME1 LINE L1 5580 5822 -344 2243 92 3 0 chrX 93618393 93618717 -83355423 + AluSp SINE Alu 1 325 0 1244 220 47 57 chrX 93618717 93618893 -83355247 + L1ME1 LINE L1 5822 5998 -168 226 223 160 0 chrX 93618947 93619041 -83355099 - MIR SINE MIR -45 217 109 353 134 0 15 chrX 93619380 93619447 -83354693 + (TTCC)n Simple_repeat Simple_repeat 3 68 0 1086 91 0 32 chrX 93619448 93619634 -83354506 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2120 110 82 72 chrX 93619636 93620053 -83354087 - MSTA LTR MaLR -7 421 1 317 123 55 0 chrX 93620053 93620306 -83353834 + CT-rich Low_complexity Low_complexity 1 180 0 665 255 93 6 chrX 93620306 93620467 -83353673 - AluJb SINE Alu 0 564 137 285 333 0 0 chrX 93620796 93620919 -83353221 - L1MC4 LINE L1 -600 7442 7320 * 6143 170 12 8 chrX 93620918 93622393 -83351747 + L1PA15 LINE L1 1371 2867 -3930 15134 176 17 10 chrX 93622393 93625918 -83348222 + L1PA15 LINE L1 3263 6816 0 2611 240 64 26 chrX 93625984 93626998 -83347142 - L1ME1 LINE L1 -8 6170 5145 2190 192 28 22 chrX 93627035 93627498 -83346642 + L1MB7 LINE L1 5455 5920 -264 2988 127 8 29 chrX 93627499 93627980 -83346160 + HSMAR2 DNA Mariner 3 473 -829 331 289 100 0 chrX 93628012 93628125 -83346015 + MIR SINE MIR 33 154 -63 2356 128 66 43 chrX 93628348 93628870 -83345270 - MLT2A2 LTR ERVL 0 554 1 981 278 62 24 chrX 93628901 93629319 -83344821 - MLT1J1 LTR MaLR -10 436 3 255 209 15 15 chrX 93629624 93629691 -83344449 - L1MC4 LINE L1 -1312 6730 6664 293 360 45 0 chrX 93629696 93629874 -83344266 - HERVL LTR ERVL -4403 1251 1066 51 42 0 0 chrX 93629892 93629964 -83344176 + AT_rich Low_complexity Low_complexity 1 72 0 364 276 129 0 chrX 93629964 93630032 -83344108 - L2 LINE L2 -8 3305 3247 198 0 0 0 chrX 93630032 93630054 -83344086 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 364 276 129 0 chrX 93630054 93630101 -83344039 - L2 LINE L2 -66 3247 3175 376 313 18 0 chrX 93630111 93630223 -83343917 - L2 LINE L2 -290 3023 2910 266 264 55 11 chrX 93630237 93630328 -83343812 - HERVL LTR ERVL -4528 957 863 1631 127 0 69 chrX 93631152 93631428 -83342712 + AluJb SINE Alu 1 257 -55 216 0 0 0 chrX 93631429 93631453 -83342687 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 246 174 0 0 chrX 93632222 93632268 -83341872 + (TG)n Simple_repeat Simple_repeat 2 47 0 2143 226 48 24 chrX 93633263 93633851 -83340289 + L1MC4 LINE L1 6488 7089 -953 1669 249 89 18 chrX 93633858 93634036 -83340104 + L1MC4 LINE L1 7258 7422 -620 2359 81 0 0 chrX 93634036 93634334 -83339806 + AluY SINE Alu 1 298 -13 1669 249 89 18 chrX 93634334 93634708 -83339432 + L1MC4 LINE L1 7422 7849 -193 2493 178 36 11 chrX 93634715 93635188 -83338952 - MLT1E2 LTR MaLR -4 622 138 256 274 0 0 chrX 93635227 93635278 -83338862 - MLT1E2 LTR MaLR -603 51 1 259 232 0 18 chrX 93635278 93635334 -83338806 + L1MC4 LINE L1 7849 7903 -139 21 57 0 0 chrX 93635383 93635418 -83338722 + AT_rich Low_complexity Low_complexity 1 35 0 887 226 157 0 chrX 93635668 93635903 -83338237 + MLT1E2 LTR MaLR 355 626 0 347 236 28 19 chrX 93635903 93636009 -83338131 + L1 LINE L1 3607 3713 -2433 2201 162 35 56 chrX 93636009 93636097 -83338043 - MLT2A2 LTR ERVL 0 554 466 2291 94 0 0 chrX 93636097 93636383 -83337757 - AluSg SINE Alu -24 286 1 2201 162 35 56 chrX 93636383 93636871 -83337269 - MLT2A2 LTR ERVL -88 466 1 1850 261 32 4 chrX 93636877 93637371 -83336769 + L1MC/D LINE L1 3745 4252 -1894 583 240 15 36 chrX 93637522 93637703 -83336437 + L1MC/D LINE L1 5009 5187 -959 3845 24 5 0 chrX 93637703 93638124 -83336016 + L1PA3 LINE L1 5730 6152 -3 583 240 15 36 chrX 93638124 93638138 -83336002 + L1MC/D LINE L1 5187 5200 -946 203 179 0 0 chrX 93638154 93638193 -83335947 + A-rich Low_complexity Low_complexity 1 39 0 1315 186 20 22 chrX 93638193 93638572 -83335568 + L1MC/D LINE L1 5175 5554 -745 328 329 80 14 chrX 93638571 93638784 -83335356 - L1ME LINE L1 -576 5545 5319 * 237 297 194 12 chrX 93639086 93639251 -83334889 + MIR SINE MIR 10 204 -58 * 302 190 35 0 chrX 93639242 93639300 -83334840 - L2 LINE L2 0 3313 3254 384 22 0 0 chrX 93639324 93639369 -83334771 + (CA)n Simple_repeat Simple_repeat 2 46 0 2385 55 14 3 chrX 93640244 93640537 -83333603 - AluY SINE Alu -15 296 1 313 270 130 32 chrX 93640537 93640722 -83333418 - L1ME4a LINE L1 -18 6103 5901 200 274 0 36 chrX 93640884 93640968 -83333172 + A-rich Low_complexity Low_complexity 1 81 0 366 184 0 0 chrX 93641081 93641157 -83332983 + CT-rich Low_complexity Low_complexity 1 76 0 369 0 0 0 chrX 93643351 93643392 -83330748 + (CA)n Simple_repeat Simple_repeat 2 42 0 270 0 0 0 chrX 93643391 93643421 -83330719 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 1804 131 21 25 chrX 93643439 93643757 -83330383 - AluSx SINE Alu 0 317 1 2076 90 47 13 chrX 93643779 93644078 -83330062 - AluSc SINE Alu 0 309 1 651 296 79 12 chrX 93644280 93644520 -83329620 - MIR SINE MIR -6 256 1 1982 163 148 35 chrX 93644588 93645042 -83329098 - MLT1D LTR MaLR 0 505 1 326 295 101 2 chrX 93645054 93645396 -83328744 + L2 LINE L2 2196 2659 -655 226 213 75 106 chrX 93645448 93645542 -83328598 - MIR SINE MIR -76 186 96 664 222 77 33 chrX 93646425 93646561 -83327579 - L1MC4 LINE L1 -1 8041 7912 194 0 39 0 chrX 93646561 93646587 -83327553 + (TA)n Simple_repeat Simple_repeat 2 28 0 664 222 77 33 chrX 93646587 93646841 -83327299 - L1MC4 LINE L1 -130 7912 7561 * 2268 192 104 16 chrX 93646836 93647450 -83326690 + L1ME2 LINE L1 5496 6163 -1 299 229 94 21 chrX 93647462 93647558 -83326582 + L2 LINE L2 3194 3296 -17 291 196 36 0 chrX 93648007 93648063 -83326077 + L2 LINE L2 3215 3272 0 264 283 43 22 chrX 93648507 93648645 -83325495 - L1ME4a LINE L1 -3 6118 5978 231 61 0 0 chrX 93648649 93648682 -83325458 + (TG)n Simple_repeat Simple_repeat 2 34 0 262 156 31 0 chrX 93649073 93649137 -83325003 + (ATG)n Simple_repeat Simple_repeat 3 68 0 268 286 126 17 chrX 93649145 93649264 -83324876 - MIR SINE MIR -8 254 123 342 0 0 0 chrX 93649438 93649476 -83324664 + (ATG)n Simple_repeat Simple_repeat 1 38 0 291 304 20 20 chrX 93649588 93649690 -83324450 - MIR SINE MIR -148 114 13 406 310 32 13 chrX 93651134 93651292 -83322848 - MER5A DNA MER1_type -1 188 28 390 316 57 32 chrX 93652633 93652880 -83321260 - L1ME4a LINE L1 -23 6098 5846 * 445 276 50 30 chrX 93652877 93653076 -83321064 + L1M4 LINE L1 2150 2352 -3794 1494 225 62 31 chrX 93656240 93656693 -83317447 - L1MD2 LINE L1 -212 6147 5681 24 32 0 0 chrX 93656973 93657004 -83317136 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chrX 93657245 93657283 -83316857 + (TG)n Simple_repeat Simple_repeat 2 39 0 706 250 13 0 chrX 93658798 93658950 -83315190 - AluJb SINE Alu -23 289 136 232 173 0 0 chrX 93659388 93659440 -83314700 + L1ME LINE L1 5731 5782 -339 6729 199 114 64 chrX 93659851 93660378 -83313762 - L1MD3 LINE L1 -8 7987 7487 508 236 0 24 chrX 93660378 93660505 -83313635 - MLT1F1 LTR MaLR -443 124 1 6729 199 114 64 chrX 93660505 93663060 -83311080 - L1MD3 LINE L1 -508 7487 4616 3570 84 4 6 chrX 93663070 93663626 -83310514 + L1PA8 LINE L1 5628 6182 0 1350 237 86 19 chrX 93663654 93664131 -83310009 - L1MD3 LINE L1 -1541 4605 4097 936 143 19 91 chrX 93664232 93664497 -83309643 + L1M4 LINE L1 4569 4814 -1332 * 2220 222 39 18 chrX 93664486 93665208 -83308932 - L1MEc LINE L1 -1550 5407 4671 1264 228 26 92 chrX 93665194 93666087 -83308053 - L1MEc LINE L1 -3501 3456 2643 * 3738 237 119 22 chrX 93666209 93666445 -83307695 - L1MEc LINE L1 -5618 1241 1030 2108 116 7 3 chrX 93666445 93666737 -83307403 - AluSx SINE Alu -19 293 1 3738 237 119 22 chrX 93666737 93667613 -83306527 - L1MEc LINE L1 -5829 1030 20 769 238 33 4 chrX 93667624 93667897 -83306243 - L1MCc LINE L1 -4966 1080 800 307 307 7 36 chrX 93668012 93668152 -83305988 - L1MCc LINE L1 -5474 572 437 511 288 18 57 chrX 93668402 93668735 -83305405 - L1MCc LINE L1 -5680 365 46 2251 122 0 0 chrX 93669808 93670112 -83304028 + AluSx SINE Alu 1 304 -8 340 331 40 14 chrX 93670128 93670276 -83303864 + MIR SINE MIR 15 166 -96 385 252 91 7 chrX 93670454 93670597 -83303543 + MLT1I LTR MaLR 255 409 0 1894 171 12 9 chrX 93670778 93671599 -83302541 + L1MB7 LINE L1 5228 6175 -9 331 177 72 115 chrX 93671604 93671813 -83302327 + HAL1 LINE L1 2308 2507 0 353 303 0 49 chrX 93671863 93672005 -83302135 - MER5A DNA MER1_type -53 136 2 240 293 0 0 chrX 93672116 93672174 -83301966 - MIR SINE MIR -114 94 37 316 321 74 37 chrX 93672995 93673210 -83300930 - L1ME4a LINE L1 -53 6068 5846 301 339 12 12 chrX 93673829 93673997 -83300143 + CT-rich Low_complexity Low_complexity 5 172 0 22 0 0 0 chrX 93676711 93676733 -83297407 + AT_rich Low_complexity Low_complexity 1 22 0 441 0 0 0 chrX 93676987 93677036 -83297104 + (CA)n Simple_repeat Simple_repeat 2 50 0 553 252 13 0 chrX 93677947 93678098 -83296042 - L1ME4a LINE L1 -369 5809 5657 306 0 0 0 chrX 93678281 93678315 -83295825 + (TG)n Simple_repeat Simple_repeat 1 34 0 302 274 146 24 chrX 93678332 93678544 -83295596 - L1MC5 LINE L1 -519 7442 7205 240 226 0 0 chrX 93678680 93678742 -83295398 + (CATA)n Simple_repeat Simple_repeat 3 64 0 187 427 0 0 chrX 93679096 93679192 -83294948 + L2 LINE L2 2569 2664 -650 282 235 15 15 chrX 93679231 93679299 -83294841 - MIR SINE MIR -147 115 48 1501 153 97 0 chrX 93680300 93680568 -83293572 - AluJo SINE Alu -13 299 6 403 295 2 24 chrX 93680576 93680749 -83293391 + MLT1J LTR MaLR 47 253 -258 2451 44 34 0 chrX 93680868 93681165 -83292975 - AluY SINE Alu -4 307 1 487 309 55 9 chrX 93681517 93681937 -83292203 - L1ME4a LINE L1 -154 5967 5529 1625 250 59 75 chrX 93682002 93682949 -83291191 - L1ME3A LINE L1 -15 6155 5194 2123 108 10 7 chrX 93682949 93683246 -83290894 - AluSx SINE Alu -14 298 1 1625 250 59 75 chrX 93683246 93683801 -83290339 - L1ME3A LINE L1 -976 5194 4666 2096 124 3 0 chrX 93683801 93684100 -83290040 - AluSg SINE Alu -10 300 1 1625 250 59 75 chrX 93684100 93684359 -83289781 - L1ME3A LINE L1 -1504 4666 4404 2629 241 42 17 chrX 93684372 93685860 -83288280 - L1ME2 LINE L1 -9 6155 4631 321 239 42 84 chrX 93685861 93686028 -83288112 - L1ME3A LINE L1 -1833 4313 4154 21 0 0 0 chrX 93686979 93687000 -83287140 + GC_rich Low_complexity Low_complexity 1 21 0 441 95 0 0 chrX 93688435 93688498 -83285642 + (TA)n Simple_repeat Simple_repeat 2 64 0 183 283 150 0 chrX 93688729 93688789 -83285351 + MIR SINE MIR 129 197 -65 1118 186 127 16 chrX 93689537 93689844 -83284296 + MER58B DNA MER1_type 1 341 0 216 292 0 0 chrX 93690719 93690767 -83283373 + L2 LINE L2 3266 3313 0 711 235 9 33 chrX 93691117 93691330 -83282810 + L1MEc LINE L1 16 223 -6173 1280 198 117 0 chrX 93691377 93691735 -83282405 + L1MEc LINE L1 1927 2326 -4070 1910 29 0 4 chrX 93691751 93691981 -83282159 - L1PA6 LINE L1 -252 5902 5672 1120 71 0 19 chrX 93691981 93692135 -83282005 + L1PA7 LINE L1 6001 6152 -2 2066 248 71 19 chrX 93692145 93692967 -83281173 + L1MEc LINE L1 2271 3134 -3081 2679 235 30 56 chrX 93692972 93693809 -83280331 + L1MEc LINE L1 3566 4423 -1792 1265 213 124 33 chrX 93693809 93694237 -83279903 - MLT1C LTR MaLR 0 467 1 2679 235 30 56 chrX 93694237 93694668 -83279472 + L1MEc LINE L1 4423 4901 -1314 1476 207 41 0 chrX 93694668 93694939 -83279201 - AluJo SINE Alu -30 282 1 2679 235 30 56 chrX 93694939 93695284 -83278856 + L1MEc LINE L1 4901 5253 -962 2409 88 0 7 chrX 93695362 93695669 -83278471 + AluSg SINE Alu 1 305 -5 677 282 34 63 chrX 93695792 93696143 -83277997 + L1MDa LINE L1 20 360 -6180 1700 189 86 12 chrX 93696146 93696554 -83277586 + L1MD2 LINE L1 5867 6304 -55 1026 195 17 48 chrX 93696563 93696674 -83277466 - L1MB8 LINE L1 -5 6173 6060 2102 88 3 11 chrX 93696674 93696957 -83277183 - AluSc SINE Alu -26 283 3 1026 195 17 48 chrX 93696957 93697137 -83277003 - L1MB8 LINE L1 -118 6060 5891 627 96 0 0 chrX 93697238 93697332 -83276808 - L1MB3 LINE L1 -12 6171 6078 2278 171 0 8 chrX 93697333 93697723 -83276417 + MER66B LTR ERV1 5 391 -95 374 41 0 0 chrX 93697723 93697772 -83276368 - MLT2A1 LTR ERVL 0 444 396 12823 106 12 1 chrX 93697774 93698524 -83275616 + MER66B-int LTR ERV1 4804 5544 -1132 192 40 0 0 chrX 93698524 93698549 -83275591 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 12823 106 12 1 chrX 93698549 93699650 -83274490 + MER66B-int LTR ERV1 5544 6676 0 2904 156 17 6 chrX 93699650 93700131 -83274009 + MER66B LTR ERV1 1 486 0 293 140 0 0 chrX 93700131 93700181 -83273959 - L1MB3 LINE L1 -100 6083 6034 625 299 71 73 chrX 93700563 93701141 -83272999 - L2 LINE L2 -581 2733 2157 457 306 21 31 chrX 93701158 93701351 -83272789 + MIR SINE MIR 1 191 -71 530 280 73 26 chrX 93701753 93701985 -83272155 + L1M4 LINE L1 13 255 -6287 506 206 29 7 chrX 93702050 93702272 -83271868 + L1M4 LINE L1 1906 2276 -4370 1211 244 9 9 chrX 93702317 93702662 -83271478 + L1M4 LINE L1 4765 5109 -1535 18713 169 12 15 chrX 93702794 93703032 -83271108 + HERVL74 LTR ERVL 1177 1414 -4271 1734 166 25 0 chrX 93703032 93703309 -83270831 + AluJo SINE Alu 6 289 -23 18713 169 12 15 chrX 93703309 93706411 -83267729 + HERVL74 LTR ERVL 1414 4505 -1180 2977 234 30 7 chrX 93706411 93707323 -83266817 + L1MB5 LINE L1 3537 4469 -2175 334 179 0 48 chrX 93707323 93707407 -83266733 + MSTB1 LTR MaLR 1 80 -352 2843 212 12 36 chrX 93707412 93707626 -83266514 + L1M4 LINE L1 5036 5253 -1391 1415 186 49 98 chrX 93707626 93708034 -83266106 - MLT1B LTR MaLR 0 390 3 2843 212 12 36 chrX 93708034 93708634 -83265506 + L1M4 LINE L1 5253 5831 -813 1285 207 4 0 chrX 93708632 93708898 -83265242 + L1MB5 LINE L1 4525 4791 -1853 * 768 120 17 0 chrX 93708904 93709021 -83265119 - FLAM_C SINE Alu -19 124 6 185 59 59 0 chrX 93709061 93709095 -83265045 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 41715 42 2 2 chrX 93709096 93715232 -83258908 - L1PA4 LINE L1 -18 6137 2 1005 277 48 18 chrX 93715236 93715728 -83258412 + HERVL74 LTR ERVL 5071 5670 -15 2552 166 22 7 chrX 93715734 93716187 -83257953 + MER74C LTR ERVL 1 460 0 1690 168 21 0 chrX 93716188 93716564 -83257576 + L1MB5 LINE L1 5458 5841 -803 * 3900 143 6 7 chrX 93716541 93717594 -83256546 + L1PA14 LINE L1 5420 6656 -3 4276 176 33 2 chrX 93717603 93718418 -83255722 + L1MB5 LINE L1 5817 6656 -16 1295 211 0 4 chrX 93718594 93718836 -83255304 + AluJo SINE Alu 3 243 -69 300 281 96 27 chrX 93719042 93719188 -83254952 + L1ME3A LINE L1 5962 6117 -53 8750 136 40 10 chrX 93719218 93721864 -83252276 - L1MA2 LINE L1 0 6304 3574 881 96 0 9 chrX 93721864 93721979 -83252161 - AluSq/x SINE Alu -198 114 1 354 167 14 111 chrX 93721988 93722132 -83252008 - L1M4 LINE L1 -1540 4606 4477 * 666 228 116 21 chrX 93722100 93722429 -83251711 - L1MEc LINE L1 -3010 3205 2846 1785 186 16 16 chrX 93722563 93722939 -83251201 + MLT2D LTR ERVL 39 414 0 27 49 0 0 chrX 93723020 93723061 -83251079 + AT_rich Low_complexity Low_complexity 1 41 0 262 259 52 26 chrX 93723277 93723393 -83250747 + MIR SINE MIR 117 235 -27 353 261 109 24 chrX 93723640 93723805 -83250335 - L1ME4a LINE L1 -218 5903 5725 324 211 32 89 chrX 93724323 93724446 -83249694 - L1ME3A LINE L1 -93 6077 5962 751 246 140 3 chrX 93724496 93724874 -83249266 - L1ME3A LINE L1 -203 5967 5538 1033 207 81 23 chrX 93724975 93725323 -83248817 - L1MC5 LINE L1 -113 7848 7481 2806 130 0 2 chrX 93725334 93725772 -83248368 - L1MB3 LINE L1 -4 6179 5743 482 215 10 75 chrX 93725772 93725900 -83248240 - L1MEc LINE L1 -3777 2438 2326 1762 97 0 59 chrX 93725900 93726136 -83248004 + L1PA15 LINE L1 5893 6111 -54 2582 58 0 0 chrX 93726136 93726447 -83247693 + AluY SINE Alu 1 311 0 1762 97 0 59 chrX 93726447 93726499 -83247641 + L1PA15 LINE L1 6111 6164 -1 482 215 10 75 chrX 93726499 93726570 -83247570 - L1MEc LINE L1 -3889 2326 2252 2310 164 9 93 chrX 93726571 93727095 -83247045 - MLT2B3 LTR ERVL 0 554 75 423 141 0 0 chrX 93727192 93727263 -83246877 - MLT2B3 LTR ERVL -483 71 1 399 255 7 26 chrX 93727269 93727422 -83246718 - L1MEc LINE L1 -4106 2290 2141 2363 171 11 69 chrX 93727435 93727997 -83246143 + L1M4c LINE L1 1 529 -6501 337 249 113 80 chrX 93728005 93728218 -83245922 - MIR SINE MIR -34 228 9 350 304 23 60 chrX 93729388 93729605 -83244535 + L1MC4a LINE L1 5349 5557 -607 268 222 0 0 chrX 93731360 93731423 -83242717 + L1ME4a LINE L1 5846 5908 -213 297 0 0 0 chrX 93732627 93732660 -83241480 + (TG)n Simple_repeat Simple_repeat 2 34 0 273 230 0 0 chrX 93732660 93732734 -83241406 + (TA)n Simple_repeat Simple_repeat 2 75 0 258 183 40 8 chrX 93732798 93732924 -83241216 + (TA)n Simple_repeat Simple_repeat 2 131 0 181 238 24 0 chrX 93733325 93733367 -83240773 - MER5A DNA MER1_type -22 167 125 1090 167 0 0 chrX 93733368 93733536 -83240604 + FAM SINE Alu 1 168 -7 424 278 105 9 chrX 93734544 93734803 -83239337 + L1MC4a LINE L1 5600 5824 -297 353 286 107 22 chrX 93735268 93735446 -83238694 + L1MC/D LINE L1 5605 5797 -2011 984 234 50 16 chrX 93735494 93736049 -83238091 + L1M4c LINE L1 2459 3124 -3984 1879 232 19 41 chrX 93736049 93736282 -83237858 - MER74A LTR ERVL 0 558 322 306 0 0 0 chrX 93736282 93736316 -83237824 + (TG)n Simple_repeat Simple_repeat 1 34 0 1879 232 19 41 chrX 93736316 93736647 -83237493 - MER74A LTR ERVL -236 322 6 2629 230 47 56 chrX 93736650 93737663 -83236477 + L1M4c LINE L1 3118 4121 -2985 2535 220 25 7 chrX 93737665 93738514 -83235626 + L1M4 LINE L1 1 807 -5084 667 257 20 0 chrX 93738533 93738735 -83235405 + L1M4 LINE L1 4868 5073 -897 39 0 0 0 chrX 93738741 93738780 -83235360 + AT_rich Low_complexity Low_complexity 1 39 0 284 133 0 111 chrX 93738780 93738870 -83235270 + L1M LINE L1 5078 5157 -847 996 140 0 0 chrX 93738870 93739013 -83235127 - FLAM_C SINE Alu 0 143 1 273 29 0 0 chrX 93739052 93739086 -83235054 + (CA)n Simple_repeat Simple_repeat 1 34 0 366 23 0 0 chrX 93740216 93740260 -83233880 + THE1C LTR MaLR 1 44 -331 937 221 96 30 chrX 93740333 93740825 -83233315 - L1M4 LINE L1 -5196 1346 823 1899 258 80 12 chrX 93740926 93741875 -83232265 - L1MEc LINE L1 -3081 3065 2110 1922 143 0 17 chrX 93741963 93742257 -83231883 + AluJb SINE Alu 4 292 -20 370 354 16 20 chrX 93742490 93742744 -83231396 + L2 LINE L2 2153 2405 -909 33 25 0 0 chrX 93743316 93743356 -83230784 + AT_rich Low_complexity Low_complexity 1 40 0 636 308 59 4 chrX 93743423 93743660 -83230480 + MIR SINE MIR 13 262 0 2593 94 59 15 chrX 93744045 93744451 -83229689 - MSTA LTR MaLR -2 426 3 189 313 95 56 chrX 93744589 93744768 -83229372 - MER5A DNA MER1_type 0 189 4 2315 88 0 0 chrX 93744841 93745126 -83229014 + AluSg SINE Alu 2 286 -24 204 48 71 24 chrX 93745133 93745175 -83228965 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 187 370 83 19 chrX 93745284 93745392 -83228748 - L2 LINE L2 -16 3256 3142 361 281 170 8 chrX 93746486 93746721 -83227419 - L1ME4a LINE L1 -14 6107 5835 2701 106 120 0 chrX 93749233 93749650 -83224490 - LTR24 LTR ERV1 0 467 1 282 248 132 8 chrX 93750720 93750841 -83223299 + L1ME LINE L1 5620 5755 -366 208 165 73 18 chrX 93750965 93751074 -83223066 + (TA)n Simple_repeat Simple_repeat 1 115 0 351 0 0 0 chrX 93751078 93751117 -83223023 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 65 0 16 chrX 93752663 93752696 -83221444 + AT_rich Low_complexity Low_complexity 1 34 -27 7243 38 9 0 chrX 93752696 93753865 -83220275 - L1PA6 LINE L1 -3 6151 4977 23 65 0 16 chrX 93753865 93753893 -83220247 + AT_rich Low_complexity Low_complexity 34 61 0 449 320 73 14 chrX 93754318 93754795 -83219345 - L1MC4a LINE L1 -468 5653 5425 234 169 68 34 chrX 93754805 93754864 -83219276 - MIR SINE MIR -88 174 114 267 94 57 38 chrX 93755020 93755073 -83219067 - MIR SINE MIR -21 241 188 1946 146 16 7 chrX 93755126 93755434 -83218706 + AluJo SINE Alu 2 312 0 225 0 0 0 chrX 93755439 93755464 -83218676 + (GA)n Simple_repeat Simple_repeat 2 26 0 254 274 0 27 chrX 93756690 93756763 -83217377 + C-rich Low_complexity Low_complexity 4 74 0 207 220 0 20 chrX 93757086 93757136 -83217004 + GA-rich Low_complexity Low_complexity 2 50 0 446 296 25 10 chrX 93757469 93757665 -83216475 - L1M4 LINE L1 -3794 2352 2154 276 217 0 0 chrX 93757804 93757873 -83216267 + L1ME4a LINE L1 6011 6079 -42 202 226 145 16 chrX 93758051 93758113 -83216027 + MIR SINE MIR 124 193 -69 2424 61 7 0 chrX 93758233 93758528 -83215612 + AluY SINE Alu 1 297 -14 645 80 0 0 chrX 93759186 93759274 -83214866 + (TCTA)n Simple_repeat Simple_repeat 1 88 0 2027 127 3 33 chrX 93759277 93759584 -83214556 - AluSx SINE Alu -14 298 1 315 238 43 61 chrX 93760218 93760382 -83213758 - MER113 DNA MER1_type? -317 204 44 1404 251 37 24 chrX 93760467 93760921 -83213219 - LTR40c LTR ERVL -5 460 1 438 162 0 2 chrX 93761505 93761619 -83212521 - L1P LINE L1 -742 5423 5313 235 235 0 0 chrX 93761718 93761769 -83212371 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 25 0 0 0 chrX 93761865 93761890 -83212250 + AT_rich Low_complexity Low_complexity 1 25 0 192 273 242 18 chrX 93761999 93762112 -83212028 - MIR SINE MIR -60 148 23 199 275 80 80 chrX 93762171 93762309 -83211831 + L2 LINE L2 2896 3033 -239 1764 181 48 13 chrX 93762309 93762701 -83211439 - L1MB8 LINE L1 -1 6177 5772 13494 135 24 10 chrX 93862738 93865205 -83108935 - L1P4 LINE L1 -651 5523 3028 1628 147 0 16 chrX 93865262 93865520 -83108620 + AluJb SINE Alu 35 288 -24 4881 199 41 9 chrX 93866211 93868174 -83105966 + L1MB8 LINE L1 4148 6177 -1 276 220 10 30 chrX 93868291 93868391 -83105749 - L1MB8 LINE L1 -449 5672 5575 607 248 87 40 chrX 93868479 93868754 -83105386 - L1MC4a LINE L1 -151 5970 5681 876 235 117 118 chrX 93868831 93869221 -83104919 + MLT1H1 LTR MaLR 31 430 -125 2110 113 7 0 chrX 93869221 93869503 -83104637 - AluSx SINE Alu -28 284 1 876 235 117 118 chrX 93869503 93869623 -83104517 + MLT1H1 LTR MaLR 430 549 -6 413 133 0 0 chrX 93869683 93869743 -83104397 + MER58 DNA MER1_type 2361 2420 0 1950 132 14 0 chrX 93869901 93870189 -83103951 - AluSx SINE Alu -20 292 1 195 167 106 61 chrX 93870328 93870394 -83103746 + MIR SINE MIR 88 156 -106 976 239 116 12 chrX 93870417 93870752 -83103388 + L1ME3A LINE L1 5499 5868 -302 191 318 61 38 chrX 93871114 93871246 -83102894 + MIR3 SINE MIR 10 144 -64 333 0 0 0 chrX 93871951 93871988 -83102152 + (TG)n Simple_repeat Simple_repeat 2 38 0 1196 212 86 52 chrX 93872017 93872366 -83101774 + MLT1A1 LTR MaLR 1 361 -4 902 226 63 24 chrX 93875658 93875990 -83098150 + Charlie1b DNA MER1_type 94 438 -85 600 227 68 6 chrX 93876081 93876257 -83097883 - LTR37A LTR ERV1 -239 187 1 443 286 26 7 chrX 93876285 93876439 -83097701 - MER31-int LTR ERV1 -712 4224 4068 5900 169 31 7 chrX 93876460 93878573 -83095567 - L1MB3 LINE L1 -19 6164 3999 1845 229 84 62 chrX 93878602 93879306 -83094834 - MER31-int LTR ERV1 -881 4055 3337 1722 142 13 41 chrX 93879337 93879475 -83094665 + AluJo SINE Alu 1 141 -171 207 69 0 0 chrX 93879475 93879504 -83094636 + (CAA)n Simple_repeat Simple_repeat 1 29 0 1722 142 13 41 chrX 93879504 93879682 -83094458 + AluJo SINE Alu 141 308 -4 1173 272 23 10 chrX 93879747 93880048 -83094092 + REP3 LTR ERV 4 308 -254 634 187 7 27 chrX 93880048 93880198 -83093942 - L1MA6 LINE L1 -123 6177 6031 541 175 0 0 chrX 93880198 93880291 -83093849 + L1MA6 LINE L1 6198 6300 0 356 287 23 0 chrX 93880302 93880389 -83093751 + REP3 LTR ERV 292 380 -182 300 213 0 0 chrX 93880429 93880490 -83093650 + REP3 LTR ERV 455 515 -47 359 270 32 16 chrX 93880544 93880670 -83093470 - MER31-int LTR ERV1 -1648 3288 3161 511 254 53 29 chrX 93881103 93881312 -83092828 - L1ME3A LINE L1 -289 5881 5668 248 206 55 14 chrX 93881285 93881358 -83092782 - L1ME3A LINE L1 -218 5952 5877 * 2269 119 14 6 chrX 93881378 93881738 -83092402 - L1MA2 LINE L1 0 6304 5942 1118 190 133 30 chrX 93881752 93882121 -83092019 + L1MC5 LINE L1 7511 7917 -44 337 308 23 23 chrX 93882362 93882495 -83091645 + MIR SINE MIR 15 147 -115 180 239 131 69 chrX 93882888 93883018 -83091122 + MIR3 SINE MIR 9 146 -62 191 235 0 0 chrX 93883059 93883093 -83091047 - L2 LINE L2 -23 3249 3216 466 277 77 31 chrX 93883168 93883512 -83090628 - L2 LINE L2 -186 3086 2731 336 103 82 0 chrX 93883906 93884146 -83089994 + (TA)n Simple_repeat Simple_repeat 1 259 0 1558 155 47 14 chrX 93884146 93884423 -83089717 - AluJo SINE Alu -26 286 1 782 265 14 9 chrX 93885050 93885273 -83088867 - L1ME1 LINE L1 -3 6163 5940 2286 217 44 44 chrX 93885281 93886072 -83088068 - L1M4 LINE L1 -3177 2969 2179 1900 169 0 3 chrX 93886278 93886579 -83087561 - AluJb SINE Alu -12 300 1 229 250 190 0 chrX 93887432 93887548 -83086592 - MIR SINE MIR -11 251 114 1470 223 33 13 chrX 93888155 93888456 -83085684 + Tigger5 DNA MER2_type 1 307 -2016 428 117 0 52 chrX 93888441 93888518 -83085622 + Tigger5 DNA MER2_type 2242 2314 -9 * 195 350 17 33 chrX 93889135 93889255 -83084885 - MIR SINE MIR -143 119 2 203 296 93 28 chrX 93889277 93889385 -83084755 - MIR3 SINE MIR -86 122 8 915 259 31 10 chrX 93889593 93889882 -83084258 + L1MC5 LINE L1 5613 5907 -1901 957 204 36 5 chrX 93889882 93890078 -83084062 - MER3 DNA MER1_type 0 209 8 1323 218 63 94 chrX 93890288 93890895 -83083245 + L1MC5 LINE L1 6638 7225 -736 313 265 70 7 chrX 93890924 93891115 -83083025 + L1MC5 LINE L1 7258 7495 -547 1042 45 0 8 chrX 93891121 93891255 -83082885 - L1PA7 LINE L1 -6 6148 6016 847 216 63 8 chrX 93891890 93892144 -83081996 + L1ME3A LINE L1 5652 5919 -251 1249 232 15 11 chrX 93892698 93892961 -83081179 + AluJo SINE Alu 2 265 -47 3565 227 36 28 chrX 93893267 93893579 -83080561 + L1ME1 LINE L1 4373 4681 -1483 1820 160 166 8 chrX 93893579 93893947 -83080193 - MSTA LTR MaLR -2 426 1 3565 227 36 28 chrX 93893947 93895252 -83078888 + L1ME1 LINE L1 4681 5992 -172 264 176 73 0 chrX 93896360 93896428 -83077712 - MIR SINE MIR -81 181 109 423 0 0 0 chrX 93896839 93896886 -83077254 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 369 212 134 16 chrX 93898431 93898646 -83075494 - MLT1F LTR MaLR -53 489 268 434 200 0 0 chrX 93898668 93898744 -83075396 - MER53 DNA DNA 0 189 114 1761 228 20 35 chrX 93898744 93899115 -83075025 + MLT2D LTR ERVL 1 367 -47 270 0 0 0 chrX 93899115 93899145 -83074995 + (TG)n Simple_repeat Simple_repeat 2 31 0 1761 228 20 35 chrX 93899145 93899176 -83074964 + MLT2D LTR ERVL 367 397 -17 320 157 0 0 chrX 93899194 93899245 -83074895 - MER53 DNA DNA -137 52 2 239 288 0 0 chrX 93899366 93899425 -83074715 + L1MB7 LINE L1 5482 5540 -581 2032 123 47 65 chrX 93899946 93900328 -83073812 - THE1C LTR MaLR 0 375 1 2200 168 41 59 chrX 93901490 93901930 -83072210 + MSTB1 LTR MaLR 1 432 0 967 181 151 9 chrX 93903082 93903314 -83070826 + L1MD3 LINE L1 7408 7672 -323 * 2299 217 58 15 chrX 93903310 93903899 -83070241 + L1MB7 LINE L1 5571 6184 0 296 346 20 0 chrX 93904232 93904385 -83069755 + L1ME4a LINE L1 5540 5695 -426 823 155 0 0 chrX 93907412 93907541 -83066599 + FLAM_C SINE Alu 11 139 -4 304 291 147 0 chrX 93907884 93908024 -83066116 + MIR SINE MIR 50 207 -55 222 128 0 0 chrX 93909411 93909450 -83064690 + (CA)n Simple_repeat Simple_repeat 2 40 0 823 164 0 8 chrX 93910031 93910165 -83063975 + FLAM_C SINE Alu 1 133 -10 196 337 35 0 chrX 93910547 93910633 -83063507 + MIR SINE MIR 104 192 -70 186 361 53 6 chrX 93911468 93911637 -83062503 + L2 LINE L2 1750 1926 -1388 597 283 31 26 chrX 93911746 93911937 -83062203 + MIR SINE MIR 27 218 -44 1763 226 44 22 chrX 93912093 93912545 -83061595 - MLT1C LTR MaLR 0 467 6 212 250 0 0 chrX 93912596 93912648 -83061492 + (CATA)n Simple_repeat Simple_repeat 4 55 0 574 289 111 4 chrX 93913088 93913313 -83060827 + MIR SINE MIR 11 259 -3 321 285 108 43 chrX 93913446 93913546 -83060594 + L1ME4a LINE L1 5879 5971 -150 1550 198 114 14 chrX 93913546 93913904 -83060236 - MSTD LTR MaLR -2 394 1 321 285 108 43 chrX 93913904 93913989 -83060151 + L1ME4a LINE L1 5971 6076 -45 21 36 0 0 chrX 93914016 93914044 -83060096 + AT_rich Low_complexity Low_complexity 1 28 0 2490 167 52 7 chrX 93914361 93914769 -83059371 + MSTB LTR MaLR 1 426 0 2434 155 60 2 chrX 93915452 93915872 -83058268 + LTR47A LTR ERVL 1 444 -8 833 171 69 51 chrX 93915976 93916151 -83057989 + AluJb SINE Alu 82 259 -53 214 286 0 32 chrX 93916158 93916171 -83057969 - MIR SINE MIR -200 62 50 197 33 33 0 chrX 93916171 93916201 -83057939 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 214 286 0 32 chrX 93916201 93916250 -83057890 - MIR SINE MIR -212 50 2 552 30 0 0 chrX 93916736 93916802 -83057338 + (CA)n Simple_repeat Simple_repeat 2 67 0 732 176 59 13 chrX 93917360 93917513 -83056627 - MER45 DNA AcHobo 0 1581 1422 1512 182 14 10 chrX 93917513 93917809 -83056331 - L1MC3 LINE L1 -4 7781 7485 * 3699 218 67 25 chrX 93917804 93918244 -83055896 - L1M4 LINE L1 -1538 4608 4188 2404 99 0 0 chrX 93918244 93918557 -83055583 - AluSq SINE Alu 0 313 1 3699 218 67 25 chrX 93918557 93919215 -83054925 - L1M4 LINE L1 -1958 4188 3464 2467 50 0 3 chrX 93919225 93919524 -83054616 + AluY SINE Alu 1 298 -13 642 286 55 0 chrX 93919532 93919714 -83054426 - MER63A DNA MER1_type 0 210 19 577 273 12 6 chrX 93919722 93919894 -83054246 - L1M4 LINE L1 -2685 3461 3289 3749 169 49 13 chrX 93919899 93920587 -83053553 - L1MB7 LINE L1 0 6995 6283 1517 172 19 0 chrX 93920620 93920876 -83053264 + MLT1A1 LTR MaLR 105 365 0 8085 221 28 30 chrX 93920882 93922031 -83052109 - L1MB7 LINE L1 -1948 5009 3859 800 213 0 0 chrX 93922031 93922158 -83051982 - FLAM_A SINE Alu -6 127 1 8085 221 28 30 chrX 93922158 93922730 -83051410 - L1MB7 LINE L1 -3098 3859 3287 2302 125 0 0 chrX 93922730 93923042 -83051098 - AluSq SINE Alu -1 312 1 8085 221 28 30 chrX 93923042 93923801 -83050339 - L1MB7 LINE L1 -3670 3287 2565 2527 242 23 4 chrX 93923907 93924796 -83049344 - L1MB7 LINE L1 -5030 1825 814 2436 252 37 33 chrX 93924817 93925054 -83049086 - MER21B LTR ERV1 -60 803 568 1597 171 84 105 chrX 93925054 93925529 -83048611 - MER4C LTR ERV1 0 465 1 2436 252 37 33 chrX 93925529 93926111 -83048029 - MER21B LTR ERV1 -295 568 14 684 242 6 37 chrX 93926136 93926297 -83047843 - L1MB7 LINE L1 -6041 818 663 429 227 68 30 chrX 93926290 93926349 -83047791 - L1MEc LINE L1 -4331 2065 2010 * 998 219 41 58 chrX 93926349 93926591 -83047549 + MER8 DNA MER2_type 2 239 0 429 227 68 30 chrX 93926591 93926663 -83047477 - L1MEc LINE L1 -4386 2010 1929 2251 152 56 30 chrX 93926666 93927183 -83046957 - MLT2A2 LTR ERVL -1 553 1 252 247 0 26 chrX 93927186 93927263 -83046877 - L1MEc LINE L1 -4471 1925 1851 * 4607 185 45 5 chrX 93927258 93929098 -83045042 - L1MB8 LINE L1 -1 6177 4258 304 127 0 0 chrX 93929104 93929159 -83044981 - L1MA7 LINE L1 -2 6289 6235 854 278 11 37 chrX 93929166 93929439 -83044701 - ERVL LTR ERVL -1445 4319 4054 536 141 61 0 chrX 93929617 93929716 -83044424 - L1M4 LINE L1 -1612 4534 4430 251 299 155 10 chrX 93929840 93929937 -83044203 + MER5B DNA MER1_type 12 122 -56 207 175 333 0 chrX 93930082 93930145 -83043995 - MIR SINE MIR -94 114 31 306 268 47 63 chrX 93930903 93931030 -83043110 - MIR SINE MIR -18 244 120 337 246 48 107 chrX 93931452 93931639 -83042501 - L1ME4a LINE L1 -100 6021 5846 276 360 0 0 chrX 93932240 93932390 -83041750 + CT-rich Low_complexity Low_complexity 5 154 0 24 0 0 0 chrX 93933557 93933581 -83040559 + GC_rich Low_complexity Low_complexity 1 24 0 348 230 122 34 chrX 93933981 93934129 -83040011 + L2 LINE L2 2118 2278 -1036 711 270 127 22 chrX 93934134 93934825 -83039315 - L1ME4a LINE L1 -763 5383 4775 439 324 79 50 chrX 93934947 93935327 -83038813 + L2 LINE L2 2272 2662 -652 454 296 96 6 chrX 93936113 93936310 -83037830 + MIR SINE MIR 32 249 -13 191 222 0 0 chrX 93936278 93936314 -83037826 + L2 LINE L2 3263 3298 -15 * 2547 64 0 0 chrX 93936365 93936661 -83037479 + AluY SINE Alu 1 296 -15 244 157 191 90 chrX 93936876 93936965 -83037175 + MIR3 SINE MIR 10 107 -101 348 291 45 15 chrX 93937209 93937343 -83036797 - MIR SINE MIR -78 184 47 274 314 58 0 chrX 93937928 93938014 -83036126 + L2 LINE L2 2569 2659 -655 243 88 0 0 chrX 93938476 93938510 -83035630 + (TG)n Simple_repeat Simple_repeat 1 34 0 230 311 87 87 chrX 93938749 93938932 -83035208 + L2 LINE L2 3027 3209 -63 570 67 0 0 chrX 93938978 93939053 -83035087 + (TG)n Simple_repeat Simple_repeat 2 76 0 328 376 57 48 chrX 93939437 93939537 -83034603 + L1ME3A LINE L1 487 585 -5534 2426 99 0 6 chrX 93939537 93939849 -83034291 - AluSg SINE Alu 0 310 1 328 376 57 48 chrX 93939849 93940080 -83034060 + L1ME3A LINE L1 585 821 -5298 191 36 36 0 chrX 93940129 93940157 -83033983 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 2129 258 124 69 chrX 93940177 93941579 -83032561 + L1ME3A LINE L1 3479 4957 -1172 1169 192 60 95 chrX 93941583 93941947 -83032193 + MLT2D LTR ERVL 1 444 -76 279 0 0 0 chrX 93941947 93941978 -83032162 + (TC)n Simple_repeat Simple_repeat 2 32 0 1169 192 60 95 chrX 93941978 93942014 -83032126 + MLT2D LTR ERVL 444 480 -40 247 90 0 149 chrX 93942041 93942108 -83032032 + MLT2D LTR ERVL 464 520 0 1085 283 155 14 chrX 93942141 93942872 -83031268 + L1ME3A LINE L1 5018 5856 -297 1262 141 66 14 chrX 93942875 93943172 -83030968 - MLT1A1 LTR MaLR -11 354 9 640 186 28 164 chrX 93943180 93943534 -83030606 + L1ME3A LINE L1 5847 6152 -1 399 274 123 57 chrX 93943530 93943880 -83030260 + L1M4 LINE L1 2491 2863 -3283 * 245 303 194 37 chrX 93944000 93944166 -83029974 - MIR SINE MIR -20 188 1 4362 177 92 49 chrX 93944338 93944995 -83029145 + L1MCb LINE L1 427 1054 -5510 1875 172 3 0 chrX 93944995 93945297 -83028843 + AluJo SINE Alu 5 307 -5 4362 177 92 49 chrX 93945297 93945833 -83028307 + L1MCb LINE L1 1054 1566 -4998 3529 101 38 10 chrX 93945833 93946330 -83027810 - MER9 LTR ERVK 0 511 1 4362 177 92 49 chrX 93946330 93946486 -83027654 + L1MCb LINE L1 1566 1714 -4850 1871 157 10 3 chrX 93946486 93946791 -83027349 - AluJb SINE Alu -5 307 1 4362 177 92 49 chrX 93946791 93947081 -83027059 + L1MCb LINE L1 1714 2151 -4413 236 123 18 88 chrX 93947113 93947170 -83026970 + L1MCb LINE L1 2268 2320 -4244 2430 73 0 17 chrX 93947170 93947472 -83026668 + AluY SINE Alu 1 297 -14 1219 108 6 0 chrX 93947472 93947638 -83026502 + AluSg/x SINE Alu 134 300 -12 2301 228 51 33 chrX 93947638 93947922 -83026218 + L1MCb LINE L1 2371 2649 -3915 2106 145 0 0 chrX 93947922 93948219 -83025921 + AluJb SINE Alu 1 297 -15 2301 228 51 33 chrX 93948219 93948905 -83025235 + L1MCb LINE L1 2649 3336 -3228 3182 72 7 0 chrX 93948905 93949324 -83024816 + L1PA7 LINE L1 5733 6154 0 745 178 17 29 chrX 93949324 93949498 -83024642 + MLT1A1 LTR MaLR 188 359 -6 1399 209 66 29 chrX 93950054 93950154 -83023986 + L1MCb LINE L1 3179 3274 -3290 2505 64 0 0 chrX 93950154 93950451 -83023689 - AluY SINE Alu -14 297 1 1399 209 66 29 chrX 93950451 93950867 -83023273 + L1MCb LINE L1 3274 3714 -2850 747 139 90 0 chrX 93950867 93950989 -83023151 + FLAM_C SINE Alu 1 133 -10 301 270 96 0 chrX 93950990 93951105 -83023035 + L1MCb LINE L1 3707 3832 -2732 603 199 209 0 chrX 93951118 93951314 -83022826 + L1MCb LINE L1 4577 4813 -1751 5727 141 128 87 chrX 93951321 93952219 -83021921 + L1MC3 LINE L1 6188 7273 -512 275 196 49 59 chrX 93952219 93952321 -83021819 + MLT1F1 LTR MaLR 25 125 -442 5727 141 128 87 chrX 93952321 93952856 -83021284 + L1MC3 LINE L1 7273 7785 0 21 0 0 0 chrX 93953778 93953799 -83020341 + AT_rich Low_complexity Low_complexity 1 21 0 270 279 22 34 chrX 93953859 93954038 -83020102 - L1ME4a LINE L1 -100 6021 5845 432 322 10 21 chrX 93954506 93954699 -83019441 + CT-rich Low_complexity Low_complexity 1 190 0 1521 207 47 19 chrX 93956441 93956888 -83017252 + MER89 LTR ERV1 1 559 0 888 155 19 7 chrX 93956915 93957070 -83017070 - Tigger3(Golem) DNA MER2_type -2 3027 2871 301 253 73 73 chrX 93957158 93957269 -83016871 + L1ME LINE L1 5491 5604 -517 2348 89 0 0 chrX 93957269 93957562 -83016578 + AluSx SINE Alu 1 293 -19 301 253 73 73 chrX 93957562 93957600 -83016540 + L1ME LINE L1 5603 5640 -481 13093 140 22 11 chrX 93957620 93960717 -83013423 - L1PA11 LINE L1 -1 6173 3028 1626 155 0 16 chrX 93960774 93961032 -83013108 + AluJb SINE Alu 35 288 -24 4581 198 41 9 chrX 93961723 93963686 -83010454 + L1MB8 LINE L1 4148 6177 -1 250 220 10 30 chrX 93963803 93963903 -83010237 - L1ME4a LINE L1 -449 5672 5575 438 243 77 30 chrX 93963991 93964266 -83009874 - L1ME4a LINE L1 -151 5970 5681 809 274 52 75 chrX 93964335 93964714 -83009426 + MLT1H1 LTR MaLR 31 388 -154 2118 113 7 0 chrX 93964733 93965015 -83009125 - AluSx SINE Alu -28 284 1 275 239 372 0 chrX 93965016 93965129 -83009011 + MLT1H1 LTR MaLR 400 554 -13 377 150 0 0 chrX 93965195 93965255 -83008885 + MER58 DNA MER1_type 2361 2420 0 2055 130 13 0 chrX 93965402 93965702 -83008438 - AluSx SINE Alu -8 304 1 196 167 106 61 chrX 93965841 93965907 -83008233 + MIR SINE MIR 88 156 -106 878 242 112 12 chrX 93965909 93966265 -83007875 + L1ME3A LINE L1 5478 5868 -302 203 318 61 38 chrX 93966627 93966759 -83007381 + MIR3 SINE MIR 10 144 -64 333 0 0 0 chrX 93967464 93967501 -83006639 + (TG)n Simple_repeat Simple_repeat 2 38 0 1187 212 86 52 chrX 93967530 93967879 -83006261 + MLT1A1 LTR MaLR 1 361 -4 193 345 9 26 chrX 93970873 93970989 -83003151 - MIR SINE MIR -4 258 145 727 250 110 13 chrX 93971005 93971185 -83002955 + L1MC4 LINE L1 6894 7055 -987 2435 92 0 0 chrX 93971185 93971491 -83002649 + AluSq SINE Alu 1 306 -7 727 250 110 13 chrX 93971491 93971610 -83002530 + L1MC4 LINE L1 7055 7222 -820 209 204 0 0 chrX 93971825 93971869 -83002271 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1401 198 42 114 chrX 93972125 93972625 -83001515 + MLT2C2 LTR ERVL 1 464 0 1366 197 0 45 chrX 93972774 93973043 -83001097 + AluJo SINE Alu 1 257 -55 2334 233 33 15 chrX 93973047 93973778 -83000362 + L1ME1 LINE L1 4369 5112 -1034 345 216 17 8 chrX 93973856 93973962 -83000178 + LTR24B LTR ERV1 1 106 -507 1746 213 70 58 chrX 93973986 93974569 -82999571 + LTR34 LTR ERV1 104 693 -6 463 239 14 114 chrX 93974576 93974856 -82999284 + L1ME1 LINE L1 5871 6122 -44 * 510 263 6 25 chrX 93974745 93974905 -82999235 + L1MA10 LINE L1 6175 6331 -3 22 0 0 0 chrX 93975313 93975335 -82998805 + AT_rich Low_complexity Low_complexity 1 22 0 208 161 0 0 chrX 93975912 93975943 -82998197 - L2 LINE L2 -35 3237 3207 270 221 78 0 chrX 93976144 93976221 -82997919 - MIR SINE MIR -71 191 109 489 176 0 11 chrX 93977065 93977156 -82996984 - Tigger5 DNA MER2_type 0 2323 2234 316 173 0 0 chrX 93977163 93977215 -82996925 - Tigger5 DNA MER2_type -2268 55 4 1779 52 4 0 chrX 93977422 93977654 -82996486 + L1MA4A LINE L1 6059 6291 -12 308 259 185 35 chrX 93978542 93978801 -82995339 - MLT1G1 LTR MaLR -9 586 289 317 120 380 0 chrX 93978832 93978932 -82995208 + MER53 DNA DNA 37 174 -15 * 368 116 0 58 chrX 93978892 93978961 -82995179 - MER53 DNA DNA -124 65 1 897 200 16 76 chrX 93980041 93980291 -82993849 + MER106A DNA MER1_type 1 235 -1 192 152 0 0 chrX 93980397 93980430 -82993710 + (ATG)n Simple_repeat Simple_repeat 3 35 0 33 0 0 0 chrX 93980614 93980647 -82993493 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chrX 93981098 93981127 -82993013 + AT_rich Low_complexity Low_complexity 1 29 0 2241 207 58 47 chrX 93981153 93982276 -82991864 + L1MDa LINE L1 2211 3353 -3187 725 265 14 9 chrX 93982292 93982515 -82991625 + L1ME1 LINE L1 5940 6163 -3 1628 148 47 14 chrX 93983142 93983419 -82990721 + AluJo SINE Alu 1 286 -26 336 98 78 0 chrX 93983419 93983630 -82990510 + (TA)n Simple_repeat Simple_repeat 1 227 0 493 277 77 31 chrX 93984024 93984368 -82989772 + L2 LINE L2 2731 3086 -186 192 235 0 0 chrX 93984443 93984477 -82989663 + L2 LINE L2 3216 3249 -23 193 239 131 69 chrX 93984518 93984648 -82989492 - MIR3 SINE MIR -62 146 9 339 308 23 23 chrX 93985041 93985174 -82988966 - MIR SINE MIR -115 147 15 1023 190 133 30 chrX 93985415 93985784 -82988356 - L1MC5 LINE L1 -44 7917 7511 2234 122 14 6 chrX 93985798 93986158 -82987982 + L1MA2 LINE L1 5942 6304 0 230 206 55 14 chrX 93986178 93986251 -82987889 + L1ME3A LINE L1 5877 5952 -218 * 459 254 53 29 chrX 93986224 93986433 -82987707 + L1ME3A LINE L1 5668 5881 -289 322 259 35 17 chrX 93986876 93986992 -82987148 + MER31-int LTR ERV1 3171 3288 -1648 283 213 0 0 chrX 93987046 93987107 -82987033 - REP3 LTR ERV -47 515 455 329 287 23 0 chrX 93987147 93987234 -82986906 - REP3 LTR ERV -182 380 292 541 165 0 0 chrX 93987245 93987348 -82986792 - L1MA6 LINE L1 0 6300 6198 580 179 7 29 chrX 93987348 93987488 -82986652 + L1MA6 LINE L1 6041 6177 -123 1075 272 23 10 chrX 93987488 93987789 -82986351 - REP3 LTR ERV -254 308 4 1747 142 13 41 chrX 93987854 93988033 -82986107 - AluJo SINE Alu -3 309 141 207 69 0 0 chrX 93988033 93988062 -82986078 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1747 142 13 41 chrX 93988062 93988200 -82985940 - AluJo SINE Alu -171 141 1 1646 230 84 62 chrX 93988231 93988935 -82985205 + MER31-int LTR ERV1 3337 4055 -881 5520 172 30 6 chrX 93988964 93991077 -82983063 + L1MB3 LINE L1 3999 6164 -19 401 286 26 7 chrX 93991098 93991252 -82982888 + MER31-int LTR ERV1 4068 4224 -712 551 227 68 6 chrX 93991280 93991456 -82982684 + LTR37A LTR ERV1 1 187 -239 821 226 63 24 chrX 93991547 93991879 -82982261 - Charlie1b DNA MER1_type -85 438 94 766 123 16 11 chrX 93992243 93992377 -82981763 - MSTA LTR MaLR -226 138 1 2514 230 35 19 chrX 93992387 93993683 -82980457 + L1ME1 LINE L1 4684 5992 -172 272 176 73 0 chrX 93994791 93994859 -82979281 - MIR SINE MIR -81 181 109 495 0 0 0 chrX 93995270 93995325 -82978815 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 322 217 132 13 chrX 93996871 93997086 -82977054 - MLT1G1 LTR MaLR -53 489 270 394 200 0 0 chrX 93997108 93997184 -82976956 - MER53 DNA DNA 0 189 114 1593 228 20 35 chrX 93997184 93997555 -82976585 + MLT2D LTR ERVL 1 367 -47 270 0 0 0 chrX 93997555 93997585 -82976555 + (TG)n Simple_repeat Simple_repeat 2 31 0 1593 228 20 35 chrX 93997585 93997616 -82976524 + MLT2D LTR ERVL 367 397 -17 296 157 0 0 chrX 93997634 93997685 -82976455 - MER53 DNA DNA -137 52 2 1859 123 47 65 chrX 93998386 93998768 -82975372 - THE1C LTR MaLR 0 375 1 2014 168 41 59 chrX 93999930 94000370 -82973770 + MSTB1 LTR MaLR 1 432 0 860 181 151 9 chrX 94001523 94001755 -82972385 + L1MD3 LINE L1 7408 7672 -323 * 2039 217 58 15 chrX 94001751 94002340 -82971800 + L1MB7 LINE L1 5571 6184 0 236 346 20 0 chrX 94002673 94002826 -82971314 + L1ME4a LINE L1 5540 5695 -426 834 155 0 0 chrX 94005853 94005982 -82968158 + FLAM_C SINE Alu 11 139 -4 304 291 147 0 chrX 94006325 94006465 -82967675 + MIR SINE MIR 50 207 -55 222 128 0 0 chrX 94007852 94007891 -82966249 + (CA)n Simple_repeat Simple_repeat 2 40 0 819 164 0 8 chrX 94008472 94008606 -82965534 + FLAM_C SINE Alu 1 133 -10 200 337 35 0 chrX 94008988 94009074 -82965066 + MIR SINE MIR 104 192 -70 198 361 53 6 chrX 94009909 94010078 -82964062 + L2 LINE L2 1750 1926 -1388 601 283 31 26 chrX 94010187 94010378 -82963762 + MIR SINE MIR 27 218 -44 1589 226 44 22 chrX 94010534 94010986 -82963154 - MLT1C LTR MaLR 0 467 6 212 250 0 0 chrX 94011037 94011089 -82963051 + (CATA)n Simple_repeat Simple_repeat 4 55 0 576 301 114 0 chrX 94011529 94011748 -82962392 + MIR SINE MIR 11 254 -8 378 0 0 0 chrX 94011749 94011791 -82962349 + (TTA)n Simple_repeat Simple_repeat 3 44 0 334 311 97 35 chrX 94011844 94011986 -82962154 + L1ME4a LINE L1 5835 5998 -123 1383 198 114 14 chrX 94011986 94012344 -82961796 - MSTD LTR MaLR -2 394 1 334 311 97 35 chrX 94012344 94012429 -82961711 + L1ME4a LINE L1 5998 6076 -45 21 36 0 0 chrX 94012456 94012484 -82961656 + AT_rich Low_complexity Low_complexity 1 28 0 2305 167 52 7 chrX 94012801 94013209 -82960931 + MSTB LTR MaLR 1 426 0 2728 141 46 2 chrX 94013892 94014325 -82959815 + LTR47A LTR ERVL 1 452 0 367 321 29 22 chrX 94014553 94014690 -82959450 + L1MA9 LINE L1 13 150 -5991 7471 185 28 40 chrX 94015388 94016029 -82958111 + L1MA9 LINE L1 2736 3383 -2993 2006 139 3 19 chrX 94016029 94016339 -82957801 + AluSx SINE Alu 1 305 -7 288 0 0 0 chrX 94016339 94016371 -82957769 + (TA)n Simple_repeat Simple_repeat 2 33 0 7471 185 28 40 chrX 94016371 94019200 -82954940 + L1MA9 LINE L1 3381 6345 -31 29 28 0 0 chrX 94019204 94019240 -82954900 + AT_rich Low_complexity Low_complexity 1 36 0 2016 128 0 59 chrX 94019299 94019619 -82954521 - AluSx SINE Alu -1 311 11 953 190 146 4 chrX 94019620 94019846 -82954294 + MSTA LTR MaLR 169 426 -2 875 207 39 62 chrX 94019849 94020158 -82953982 - L1M4 LINE L1 -1472 4674 4373 1270 232 15 11 chrX 94020464 94020727 -82953413 - AluJo SINE Alu -47 265 2 778 216 63 8 chrX 94021281 94021535 -82952605 - L1ME3A LINE L1 -251 5919 5652 1040 45 0 8 chrX 94022170 94022304 -82951836 + L1PA7 LINE L1 6016 6148 -6 290 200 106 0 chrX 94022310 94022395 -82951745 - L1MC5 LINE L1 -610 7351 7258 1155 217 62 95 chrX 94022530 94023138 -82951002 - L1MC5 LINE L1 -736 7225 6638 894 204 36 5 chrX 94023348 94023544 -82950596 + MER3 DNA MER1_type 8 209 0 835 259 31 10 chrX 94023544 94023833 -82950307 - L1MC5 LINE L1 -1901 5907 5613 211 296 93 28 chrX 94024041 94024149 -82949991 + MIR3 SINE MIR 8 122 -86 203 350 17 33 chrX 94024171 94024291 -82949849 + MIR SINE MIR 2 119 -143 402 117 0 52 chrX 94024908 94024985 -82949155 - Tigger5 DNA MER2_type -9 2314 2242 * 1366 223 33 13 chrX 94024970 94025271 -82948869 - Tigger5 DNA MER2_type -2016 307 1 223 250 190 0 chrX 94025878 94025994 -82948146 + MIR SINE MIR 114 251 -11 1930 169 0 3 chrX 94026846 94027147 -82946993 + AluJb SINE Alu 1 300 -12 228 35 0 0 chrX 94027572 94027601 -82946539 + (TG)n Simple_repeat Simple_repeat 2 30 0 867 145 0 0 chrX 94027624 94027748 -82946392 - FAM SINE Alu -36 149 26 429 333 127 0 chrX 94028904 94029132 -82945008 - MIR SINE MIR -3 259 3 501 94 24 0 chrX 94029209 94029294 -82944846 - MLT1C LTR MaLR 0 505 419 997 228 49 54 chrX 94029365 94029645 -82944495 - MLT1C LTR MaLR -93 374 95 3631 47 15 23 chrX 94029645 94029972 -82944168 - L1PA7 LINE L1 -3 6151 5828 2484 62 0 16 chrX 94029972 94030280 -82943860 - AluY SINE Alu -8 303 1 3631 47 15 23 chrX 94030280 94030425 -82943715 - L1PA7 LINE L1 -326 5828 5683 997 228 49 54 chrX 94030425 94030513 -82943627 - MLT1C LTR MaLR -372 95 8 559 319 16 11 chrX 94031117 94031308 -82942832 - MIR SINE MIR -44 218 27 2405 96 0 0 chrX 94031393 94031686 -82942454 + AluSg SINE Alu 1 293 -17 267 291 46 34 chrX 94031769 94031944 -82942196 - L2 LINE L2 -1417 1897 1721 704 153 12 25 chrX 94031953 94032116 -82942024 + G-rich Low_complexity Low_complexity 1 161 0 378 57 0 0 chrX 94032154 94032207 -82941933 + (GA)n Simple_repeat Simple_repeat 2 54 0 233 323 134 0 chrX 94033037 94033164 -82940976 - MIR SINE MIR -70 192 49 2566 52 6 9 chrX 94034261 94034589 -82939551 + L1PA8A LINE L1 5805 6131 0 1006 144 5 53 chrX 94035172 94035359 -82938781 + L1PB3 LINE L1 5969 6146 -8 349 270 13 25 chrX 94035386 94035545 -82938595 + L1ME3 LINE L1 4748 4904 -1242 427 328 83 13 chrX 94035570 94035799 -82938341 + L1ME3 LINE L1 4977 5221 -925 1256 267 117 28 chrX 94035841 94036523 -82937617 + L1ME3 LINE L1 5313 6055 -107 22 35 0 0 chrX 94036617 94036646 -82937494 + AT_rich Low_complexity Low_complexity 1 29 0 2063 109 0 0 chrX 94036675 94036950 -82937190 + AluSx SINE Alu 1 275 -37 216 0 0 0 chrX 94036956 94036980 -82937160 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2370 109 17 0 chrX 94037157 94037504 -82936636 - L1PA16 LINE L1 -9 6157 5805 226 353 134 0 chrX 94038639 94038758 -82935382 - MIR SINE MIR -70 192 58 351 267 62 25 chrX 94039700 94039861 -82934279 - L1MC/D LINE L1 -2329 5479 5313 275 329 53 7 chrX 94040228 94040380 -82933760 + MIR SINE MIR 97 255 -7 262 356 7 27 chrX 94042835 94042984 -82931156 - MIR SINE MIR -67 195 50 257 329 7 50 chrX 94043320 94043460 -82930680 - L1ME LINE L1 -520 5601 5468 450 53 0 0 chrX 94044101 94044158 -82929982 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 384 242 102 0 chrX 94044627 94044784 -82929356 - LTR37A LTR ERV1 -249 177 5 295 248 39 16 chrX 94045159 94045288 -82928852 + L1MC3 LINE L1 6981 7112 -673 249 214 12 71 chrX 94045289 94045373 -82928767 + MLT1F1 LTR MaLR 47 125 -442 946 180 11 0 chrX 94045379 94045562 -82928578 + L1MD3 LINE L1 7411 7595 -400 1861 188 96 7 chrX 94045594 94046051 -82928089 + L1MB8 LINE L1 5565 6062 -116 7069 117 17 3 chrX 94046060 94048208 -82925932 + L1MA2 LINE L1 4126 6304 0 308 248 39 6 chrX 94048210 94048343 -82925797 + L1MB7 LINE L1 6049 6184 0 282 320 20 0 chrX 94048708 94048861 -82925279 + L1ME LINE L1 5540 5695 -426 2305 155 74 2 chrX 94048901 94049334 -82924806 + MER101 LTR ERV1 11 474 0 225 167 0 0 chrX 94049415 94049469 -82924671 + (CA)n Simple_repeat Simple_repeat 1 54 0 343 319 126 31 chrX 94049727 94049845 -82924295 + L1MC/D LINE L1 5406 5511 -2297 1570 160 108 134 chrX 94049845 94050345 -82923795 - LTR45B LTR ERV1 0 489 3 343 319 126 31 chrX 94050345 94050608 -82923532 + L1MC/D LINE L1 5511 5823 -1985 1721 146 3 45 chrX 94050671 94050816 -82923324 + AluJb SINE Alu 1 130 -182 2430 50 7 20 chrX 94050816 94051119 -82923021 + AluY SINE Alu 1 299 -12 1721 146 3 45 chrX 94051119 94051261 -82922879 + AluJb SINE Alu 130 276 -36 2000 14 27 0 chrX 94051620 94051842 -82922298 + L1PA2 LINE L1 5925 6152 -3 394 109 81 25 chrX 94052311 94052836 -82921304 + (TA)n Simple_repeat Simple_repeat 1 554 0 25 0 0 0 chrX 94052911 94052936 -82921204 + AT_rich Low_complexity Low_complexity 1 25 0 264 30 0 0 chrX 94053202 94053235 -82920905 + (CA)n Simple_repeat Simple_repeat 2 34 0 268 188 0 0 chrX 94053751 94053799 -82920341 - L1 LINE L1 -883 5263 5216 351 256 141 0 chrX 94054450 94054590 -82919550 + MIR SINE MIR 35 192 -40 185 362 43 0 chrX 94055446 94055587 -82918553 + L2 LINE L2 1750 1896 -1418 482 328 17 11 chrX 94055742 94055916 -82918224 + MIR SINE MIR 27 201 -61 659 212 167 56 chrX 94056056 94056444 -82917696 - MLT1C LTR MaLR 0 390 1 239 230 115 88 chrX 94056524 94056628 -82917512 + HAL1b LINE L1 1179 1290 -58 2078 129 3 7 chrX 94056628 94056937 -82917203 - AluSq SINE Alu -5 308 1 239 230 115 88 chrX 94056937 94056980 -82917160 + HAL1b LINE L1 1290 1330 -18 2461 86 3 6 chrX 94057179 94057493 -82916647 + AluSq SINE Alu 1 313 0 472 292 134 9 chrX 94057595 94057811 -82916329 + MIR SINE MIR 10 252 -10 329 292 42 81 chrX 94057905 94058012 -82916128 + L1ME4a LINE L1 5870 5980 -141 7058 115 70 39 chrX 94058012 94058625 -82915515 + Tigger3b DNA MER2_type 2 594 -2434 1860 157 0 22 chrX 94058625 94058937 -82915203 + AluJb SINE Alu 1 305 -7 7058 115 70 39 chrX 94058937 94059238 -82914902 + Tigger3b DNA MER2_type 594 884 -2144 2179 132 0 0 chrX 94059238 94059548 -82914592 - AluSx SINE Alu -2 310 1 7058 115 70 39 chrX 94059548 94059824 -82914316 + Tigger3b DNA MER2_type 884 1231 0 329 292 42 81 chrX 94059824 94059976 -82914164 + L1ME4a LINE L1 5980 6119 -2 719 206 34 39 chrX 94060948 94061151 -82912989 - MER106A DNA MER1_type 0 236 35 2333 78 16 9 chrX 94061151 94061550 -82912590 - LTR7 LTR ERV1 -2 448 1 2473 90 48 13 chrX 94061550 94061927 -82912213 - HERVH LTR ERV1 0 7713 7324 1368 117 40 9 chrX 94061927 94062150 -82911990 - HERVH LTR ERV1 -1894 5819 5590 * 6545 116 2 1 chrX 94062141 94063069 -82911071 - HERVH LTR ERV1 -2564 5149 4221 1864 148 3 7 chrX 94063067 94063364 -82910776 - HERVH LTR ERV1 -3423 4290 3995 * 15104 149 54 66 chrX 94063371 94067134 -82907006 - HERVH LTR ERV1 -3966 3747 1 2965 65 128 5 chrX 94067136 94067535 -82906605 - LTR7 LTR ERV1 -2 448 1 244 361 87 0 chrX 94067596 94067779 -82906361 + MIR SINE MIR 52 250 -12 285 306 66 8 chrX 94068319 94068440 -82905700 + MIR SINE MIR 56 183 -79 366 198 0 49 chrX 94068912 94068993 -82905147 + MSTD LTR MaLR 1 77 -351 614 274 39 53 chrX 94068993 94069201 -82904939 - LTR35 LTR ERV1 0 618 414 272 240 0 0 chrX 94069298 94069348 -82904792 - LTR60 LTR ERV1 -257 329 280 3187 128 100 37 chrX 94069898 94070152 -82903988 + MER4B LTR ERV1 1 238 -372 2155 97 7 3 chrX 94070152 94070450 -82903690 + AluSg SINE Alu 12 310 0 3187 128 100 37 chrX 94070450 94070767 -82903373 + MER4B LTR ERV1 238 608 -2 5076 129 60 41 chrX 94070805 94070940 -82903200 - MER4D LTR ERV1 0 903 772 1570 140 19 23 chrX 94070940 94071204 -82902936 - AluSx SINE Alu -8 304 42 5076 129 60 41 chrX 94071204 94071954 -82902186 - MER4D LTR ERV1 -131 772 1 1345 206 98 7 chrX 94071961 94072248 -82901892 + MSTD LTR MaLR 84 396 0 1003 190 66 5 chrX 94072249 94072460 -82901680 + MSTD-int LTR MaLR 1 224 -1511 2099 107 37 6 chrX 94072463 94072899 -82901241 - MER84 LTR ERVI 0 507 2 453 107 40 13 chrX 94072904 94072979 -82901161 - MER84 LTR ERVI -428 79 3 312 51 0 0 chrX 94072982 94073021 -82901119 - MER4D-int LTR ERV1 -1 4953 4915 6208 214 23 85 chrX 94073022 94073344 -82900796 + MSTD-int LTR MaLR 221 561 -1174 2094 128 7 0 chrX 94073344 94073642 -82900498 + AluSx SINE Alu 1 300 -12 6208 214 23 85 chrX 94073642 94074924 -82899216 + MSTD-int LTR MaLR 561 1726 -9 494 188 0 40 chrX 94074933 94075000 -82899140 + MSTD LTR MaLR 1 64 -364 1148 191 64 0 chrX 94075000 94075220 -82898920 - MER46A DNA MER2_type -2 234 1 494 188 0 40 chrX 94075220 94075253 -82898887 + MSTD LTR MaLR 64 97 -331 757 182 145 19 chrX 94075253 94075412 -82898728 + FRAM SINE Alu 1 176 0 1790 174 39 7 chrX 94075422 94075727 -82898413 + MSTD LTR MaLR 82 396 0 477 210 204 0 chrX 94077171 94077328 -82896812 + MER53 DNA DNA 1 189 0 237 294 11 65 chrX 94077344 94077436 -82896704 + MLT1G1 LTR MaLR 302 388 -207 237 224 276 0 chrX 94077525 94077623 -82896517 + MLT1H LTR MaLR 416 540 -9 6055 143 32 18 chrX 94079310 94080785 -82893355 - L1PB2 LINE L1 0 6151 4643 2144 121 7 0 chrX 94080785 94081082 -82893058 - AluSx SINE Alu -13 299 1 6055 143 32 18 chrX 94081082 94081650 -82892490 - L1PB2 LINE L1 -1508 4643 4084 2083 96 0 4 chrX 94081659 94081930 -82892210 - AluSx SINE Alu -13 299 30 214 234 78 0 chrX 94082237 94082301 -82891839 + MIR SINE MIR 109 177 -85 3468 218 29 36 chrX 94083318 94084083 -82890057 - L1ME1 LINE L1 -5 6161 5392 2200 120 0 0 chrX 94084083 94084374 -82889766 - AluSg SINE Alu -19 291 1 3468 218 29 36 chrX 94084374 94085420 -82888720 - L1ME1 LINE L1 -774 5392 4367 1187 252 9 12 chrX 94086041 94086374 -82887766 - L1MC4 LINE L1 -817 7225 6894 209 273 78 55 chrX 94086386 94086514 -82887626 + MIR SINE MIR 126 256 -6 45013 39 3 0 chrX 94086641 94092768 -82881372 - L1PA4 LINE L1 0 6155 9 2147 117 0 17 chrX 94092815 94093114 -82881026 - AluSg SINE Alu -16 294 1 359 354 17 22 chrX 94093708 94093886 -82880254 + MER5A DNA MER1_type 13 189 0 615 318 123 27 chrX 94094015 94094839 -82879301 - L2 LINE L2 -5 3308 2403 751 155 44 33 chrX 94094937 94095118 -82879022 + L1MA4 LINE L1 6115 6297 -3 469 283 8 0 chrX 94095164 94095284 -82878856 - MIR SINE MIR -115 147 27 244 338 52 33 chrX 94095389 94095602 -82878538 - L2 LINE L2 -1388 1926 1710 23 0 0 0 chrX 94095958 94095981 -82878159 + AT_rich Low_complexity Low_complexity 1 23 0 414 0 0 0 chrX 94096049 94096095 -82878045 + (TG)n Simple_repeat Simple_repeat 2 47 0 263 299 46 62 chrX 94097417 94097611 -82876529 - L1MC/D LINE L1 -1989 5819 5629 365 288 17 0 chrX 94098226 94098344 -82875796 - L1MC/D LINE L1 -461 5660 5541 2389 206 69 11 chrX 94098699 94099263 -82874877 - L1MB8 LINE L1 -10 6168 5572 1052 158 162 0 chrX 94099259 94099487 -82874653 - L1MD3 LINE L1 -322 7673 7409 * 273 254 127 0 chrX 94099493 94099564 -82874576 - MLT1F1 LTR MaLR -443 124 45 336 264 0 25 chrX 94099567 94099688 -82874452 - L1MC3 LINE L1 -682 7103 6986 664 216 147 16 chrX 94100058 94100303 -82873837 + LTR37A LTR ERV1 1 277 -149 219 178 0 22 chrX 94100756 94100801 -82873339 + L2 LINE L2 2219 2262 -1052 294 106 0 0 chrX 94101176 94101223 -82872917 + (CA)n Simple_repeat Simple_repeat 1 47 0 3696 88 43 20 chrX 94101968 94102504 -82871636 - LTR14 LTR ERVK 0 548 1 1314 234 153 11 chrX 94102843 94103345 -82870795 - MLT1F1 LTR MaLR 0 567 1 28 71 0 0 chrX 94103481 94103537 -82870603 + AT_rich Low_complexity Low_complexity 1 56 0 1470 212 72 32 chrX 94104072 94104449 -82869691 + MSTD LTR MaLR 1 392 -4 6342 219 56 46 chrX 94104453 94104769 -82869371 + MSTD-int LTR MaLR 2 313 -1422 2149 101 30 7 chrX 94104769 94105067 -82869073 + AluSq SINE Alu 3 307 -6 6342 219 56 46 chrX 94105067 94106117 -82868023 + MSTD-int LTR MaLR 313 1391 -344 1869 168 7 7 chrX 94106117 94106420 -82867720 + AluJb SINE Alu 1 303 -9 6342 219 56 46 chrX 94106420 94106740 -82867400 + MSTD-int LTR MaLR 1391 1706 -29 239 133 0 22 chrX 94106740 94106785 -82867355 + Charlie5 DNA MER1_type 166 209 -2403 490 279 39 21 chrX 94106785 94107018 -82867122 - L1MC4a LINE L1 -1901 5907 5671 194 356 48 10 chrX 94107274 94107378 -82866762 + MIR SINE MIR 18 125 -83 544 286 113 9 chrX 94107891 94108122 -82866018 - MIR SINE MIR 0 262 8 32 0 0 0 chrX 94108317 94108349 -82865791 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chrX 94109289 94109330 -82864810 + (CA)n Simple_repeat Simple_repeat 1 41 0 396 286 146 14 chrX 94109485 94109698 -82864442 - L1M4 LINE L1 -2991 3155 2915 256 211 18 0 chrX 94109736 94109793 -82864347 - L1M4 LINE L1 -3411 2735 2678 350 279 25 19 chrX 94109959 94110184 -82863956 - L1M4 LINE L1 -3714 2432 2206 811 265 51 52 chrX 94110244 94110804 -82863336 - PABL_B LTR ERV1 0 667 97 291 340 80 19 chrX 94111371 94111533 -82862607 + MIR SINE MIR 58 229 -33 241 235 102 31 chrX 94111869 94111967 -82862173 + MIR SINE MIR 28 132 -76 649 222 88 34 chrX 94113285 94113417 -82860723 - L1MC4 LINE L1 -1 8041 7918 230 0 33 0 chrX 94113417 94113447 -82860693 + (TA)n Simple_repeat Simple_repeat 1 31 0 649 222 88 34 chrX 94113447 94113701 -82860439 - L1MC4 LINE L1 -124 7918 7561 * 2268 192 104 16 chrX 94113696 94114310 -82859830 + L1ME2 LINE L1 5496 6163 -1 299 229 94 21 chrX 94114322 94114418 -82859722 + L2 LINE L2 3194 3296 -17 291 196 36 0 chrX 94114867 94114923 -82859217 + L2 LINE L2 3215 3272 0 264 283 43 22 chrX 94115367 94115505 -82858635 - L1ME4a LINE L1 -3 6118 5978 231 61 0 0 chrX 94115509 94115542 -82858598 + (TG)n Simple_repeat Simple_repeat 2 34 0 191 146 24 0 chrX 94115933 94115974 -82858166 + (ATG)n Simple_repeat Simple_repeat 3 44 0 268 286 126 17 chrX 94115982 94116101 -82858039 - MIR SINE MIR -8 254 123 315 0 0 0 chrX 94116275 94116310 -82857830 + (ATG)n Simple_repeat Simple_repeat 1 35 0 299 294 20 20 chrX 94116422 94116524 -82857616 - MIR SINE MIR -148 114 13 406 310 32 13 chrX 94117968 94118126 -82856014 - MER5A DNA MER1_type -1 188 28 390 316 57 32 chrX 94119467 94119714 -82854426 - L1ME4a LINE L1 -23 6098 5846 * 445 276 50 30 chrX 94119711 94119910 -82854230 + L1M4 LINE L1 2150 2352 -3794 1494 225 62 31 chrX 94123074 94123527 -82850613 - L1MD2 LINE L1 -212 6147 5681 24 32 0 0 chrX 94123807 94123838 -82850302 + AT_rich Low_complexity Low_complexity 1 31 0 342 0 0 0 chrX 94124079 94124117 -82850023 + (TG)n Simple_repeat Simple_repeat 2 39 0 706 250 13 0 chrX 94125632 94125784 -82848356 - AluJb SINE Alu -23 289 136 232 173 0 0 chrX 94126222 94126274 -82847866 + L1ME LINE L1 5731 5782 -339 6707 199 114 64 chrX 94126685 94127212 -82846928 - L1MD3 LINE L1 -8 7987 7488 508 236 0 24 chrX 94127212 94127339 -82846801 - MLT1F1 LTR MaLR -443 124 1 6707 199 114 64 chrX 94127339 94129893 -82844247 - L1MD3 LINE L1 -507 7488 4616 3570 84 4 6 chrX 94129903 94130459 -82843681 + L1PA8 LINE L1 5628 6182 0 1341 237 86 19 chrX 94130487 94130964 -82843176 - L1MD3 LINE L1 -1541 4605 4097 936 143 19 91 chrX 94131065 94131330 -82842810 + L1M4 LINE L1 4569 4814 -1332 * 2220 222 39 18 chrX 94131319 94132041 -82842099 - L1MEc LINE L1 -1550 5407 4671 1264 228 26 92 chrX 94132027 94132920 -82841220 - L1MEc LINE L1 -3501 3456 2643 * 3738 237 119 22 chrX 94133042 94133278 -82840862 - L1MEc LINE L1 -5618 1241 1030 2118 120 7 0 chrX 94133278 94133569 -82840571 - AluSx SINE Alu -19 293 1 3738 237 119 22 chrX 94133569 94134445 -82839695 - L1MEc LINE L1 -5829 1030 20 769 238 33 4 chrX 94134456 94134729 -82839411 - L1MCc LINE L1 -4966 1080 800 307 307 7 36 chrX 94134844 94134984 -82839156 - L1MCc LINE L1 -5474 572 437 511 288 18 57 chrX 94135234 94135567 -82838573 - L1MCc LINE L1 -5680 365 46 2251 122 0 0 chrX 94136640 94136944 -82837196 + AluSx SINE Alu 1 304 -8 340 331 40 14 chrX 94136960 94137108 -82837032 + MIR SINE MIR 15 166 -96 385 252 91 7 chrX 94137286 94137429 -82836711 + MLT1I LTR MaLR 255 409 0 1894 171 12 9 chrX 94137610 94138431 -82835709 + L1MB7 LINE L1 5228 6175 -9 331 177 72 115 chrX 94138436 94138645 -82835495 + HAL1 LINE L1 2308 2507 0 353 303 0 49 chrX 94138695 94138837 -82835303 - MER5A DNA MER1_type -53 136 2 240 293 0 0 chrX 94138948 94139006 -82835134 - MIR SINE MIR -114 94 37 316 321 74 37 chrX 94139827 94140042 -82834098 - L1ME4a LINE L1 -53 6068 5846 301 339 12 12 chrX 94140661 94140829 -82833311 + CT-rich Low_complexity Low_complexity 5 172 0 22 0 0 0 chrX 94143543 94143565 -82830575 + AT_rich Low_complexity Low_complexity 1 22 0 408 20 0 0 chrX 94143819 94143868 -82830272 + (CA)n Simple_repeat Simple_repeat 2 50 0 553 252 13 0 chrX 94144779 94144930 -82829210 - L1ME4a LINE L1 -369 5809 5657 306 0 0 0 chrX 94145116 94145150 -82828990 + (TG)n Simple_repeat Simple_repeat 1 34 0 1489 212 0 4 chrX 94145155 94145429 -82828711 - AluJo SINE Alu -37 275 3 4276 176 33 2 chrX 94145605 94146420 -82827720 - L1MB5 LINE L1 -16 6158 5319 3900 143 6 7 chrX 94146429 94147482 -82826658 - L1PA14 LINE L1 -3 6158 4922 1690 168 21 0 chrX 94147459 94147835 -82826305 - L1MB5 LINE L1 -803 5343 4960 * 2552 166 22 7 chrX 94147836 94148289 -82825851 - MER74C LTR ERVL 0 460 1 1005 277 48 18 chrX 94148295 94148787 -82825353 - HERVL74 LTR ERVL -15 5670 5071 32849 38 2 1 chrX 94148791 94154962 -82819178 + L1PA4 LINE L1 2 6172 0 845 141 16 0 chrX 94155002 94155130 -82819010 + AluJo SINE Alu 6 135 -177 1365 211 4 0 chrX 94155130 94155391 -82818749 - L1MB5 LINE L1 -1858 4288 4027 * 3190 212 12 36 chrX 94155389 94155989 -82818151 - L1M4 LINE L1 -813 5333 4755 1590 186 49 98 chrX 94155989 94156397 -82817743 + MLT1B LTR MaLR 3 390 0 3190 212 12 36 chrX 94156397 94156611 -82817529 - L1M4 LINE L1 -1391 4755 4538 364 179 0 48 chrX 94156616 94156700 -82817440 - MSTB1 LTR MaLR -352 80 1 3349 234 30 7 chrX 94156700 94157612 -82816528 - L1MB5 LINE L1 -2175 3971 3039 20251 169 12 15 chrX 94157612 94160714 -82813426 - HERVL74 LTR ERVL -1180 4505 1414 1714 166 25 0 chrX 94160714 94160991 -82813149 - AluJo SINE Alu -23 289 6 20251 169 12 15 chrX 94160991 94161229 -82812911 - HERVL74 LTR ERVL -4271 1414 1177 1382 220 11 43 chrX 94161333 94161706 -82812434 - L1M4 LINE L1 -1519 5125 4765 233 258 0 0 chrX 94161695 94161757 -82812383 - L1M4 LINE L1 -2652 3992 3931 * 551 198 17 11 chrX 94161751 94161973 -82812167 - L1M4 LINE L1 -4464 2182 1906 620 285 72 25 chrX 94162038 94162273 -82811867 - L1M4 LINE L1 -6287 255 10 443 306 21 31 chrX 94162672 94162865 -82811275 - MIR SINE MIR -71 191 1 594 299 71 73 chrX 94162882 94163460 -82810680 + L2 LINE L2 2157 2733 -581 316 140 0 0 chrX 94163842 94163892 -82810248 + L1MB3 LINE L1 6034 6083 -100 3120 158 17 6 chrX 94163892 94164373 -82809767 - MER66B LTR ERV1 0 486 1 13705 105 12 1 chrX 94164373 94165474 -82808666 - MER66B-int LTR ERV1 0 6676 5544 192 40 0 0 chrX 94165474 94165499 -82808641 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 13705 105 12 1 chrX 94165499 94166238 -82807902 - MER66B-int LTR ERV1 -1132 5544 4815 401 63 0 0 chrX 94166241 94166300 -82807840 + MLT2A1 LTR ERVL 396 444 0 * 2450 171 0 8 chrX 94166300 94166690 -82807450 - MER66B LTR ERV1 -95 391 5 679 96 0 0 chrX 94166691 94166785 -82807355 + L1MB3 LINE L1 6078 6171 -12 243 211 0 46 chrX 94166789 94166898 -82807242 + L1MB8 LINE L1 5290 5393 -907 * 671 214 23 29 chrX 94166886 94167059 -82807081 + L1MB8 LINE L1 5891 6062 -116 2239 92 3 10 chrX 94167066 94167370 -82806770 + AluSc SINE Alu 3 304 -5 1836 143 22 29 chrX 94167370 94167742 -82806398 + L1MA7 LINE L1 3294 6291 0 3431 225 43 22 chrX 94167751 94168177 -82805963 + L1M4 LINE L1 3337 3753 -2393 4492 65 2 24 chrX 94168177 94168275 -82805865 + L1PA13 LINE L1 5589 5688 -475 2103 136 0 0 chrX 94168275 94168577 -82805563 + AluSx SINE Alu 1 302 -10 4492 65 2 24 chrX 94168577 94169065 -82805075 + L1PA13 LINE L1 5688 6162 -1 3431 225 43 22 chrX 94169065 94169536 -82804604 + L1M4 LINE L1 3753 4253 -1893 497 296 98 5 chrX 94169855 94170058 -82804082 + MIR SINE MIR 18 239 -23 2398 75 3 0 chrX 94171216 94171509 -82802631 - AluSx SINE Alu -18 294 1 2408 67 0 0 chrX 94171835 94172134 -82802006 - AluY SINE Alu -12 299 1 525 178 10 0 chrX 94172708 94172809 -82801331 + MER20 DNA MER1_type 118 219 0 363 322 39 64 chrX 94172870 94173103 -82801037 + MIR SINE MIR 30 256 -6 323 260 63 24 chrX 94173735 94173862 -82800278 - MLT1I LTR MaLR -174 235 104 1332 236 165 108 chrX 94174777 94175396 -82798744 + MLT1E2 LTR MaLR 1 626 0 2067 114 123 0 chrX 94175838 94176146 -82797994 - MER7A DNA MER2_type -1 345 2 330 134 134 0 chrX 94178041 94178108 -82796032 + MER53 DNA DNA 1 76 -113 1791 203 12 53 chrX 94178119 94178532 -82795608 - MLT2D LTR ERVL -18 396 1 472 139 13 0 chrX 94178532 94178607 -82795533 + MER53 DNA DNA 114 189 0 241 303 214 4 chrX 94178634 94178868 -82795272 + MLT1H1 LTR MaLR 273 555 0 2320 85 7 26 chrX 94179698 94180004 -82794136 + AluSp SINE Alu 1 300 -13 236 188 78 0 chrX 94181045 94181109 -82793031 + MIR SINE MIR 109 177 -85 2243 181 69 21 chrX 94181215 94181647 -82792493 - MLT1D LTR MaLR -52 453 1 926 256 69 20 chrX 94181663 94181909 -82792231 + LTR33 LTR ERVL 1 258 -263 3038 214 31 24 chrX 94182915 94183813 -82790327 - L1ME1 LINE L1 -166 6000 5096 2307 104 3 0 chrX 94184470 94184769 -82789371 - AluSx SINE Alu -12 300 1 384 266 26 18 chrX 94184794 94184907 -82789233 + MER5A DNA MER1_type 7 120 -69 255 286 45 53 chrX 94184822 94184955 -82789185 - MER5A DNA MER1_type -24 165 34 * 1977 171 22 22 chrX 94184957 94185320 -82788820 - MLT1A1 LTR MaLR -2 363 1 740 293 104 37 chrX 94185461 94185946 -82788194 - L2 LINE L2 0 3313 2862 2092 61 86 14 chrX 94185946 94186224 -82787916 - AluY SINE Alu -12 299 2 740 293 104 37 chrX 94186224 94186591 -82787549 - L2 LINE L2 -451 2862 2403 282 376 34 7 chrX 94186845 94186994 -82787146 - MIR SINE MIR -101 161 9 189 210 20 130 chrX 94187018 94187118 -82787022 - MIR SINE MIR -96 112 24 573 275 72 14 chrX 94187308 94187530 -82786610 - L1ME3A LINE L1 -254 5916 5682 6423 166 23 11 chrX 94187530 94189334 -82784806 - L1PA13 LINE L1 -4 6810 4974 2338 103 0 0 chrX 94189334 94189634 -82784506 - AluSx SINE Alu -12 300 1 6423 166 23 11 chrX 94189634 94189755 -82784385 - L1PA13 LINE L1 -1840 4974 4856 6851 192 49 18 chrX 94189755 94191060 -82783080 - L1PA13 LINE L1 -5442 1345 1 708 241 38 72 chrX 94191071 94191361 -82782779 - L1ME3A LINE L1 -474 5696 5417 396 177 207 37 chrX 94191380 94191544 -82782596 - L1MC5 LINE L1 -440 7521 7330 7622 128 31 26 chrX 94191621 94192846 -82781294 - Tigger3b DNA MER2_type 0 1231 1 1343 199 49 57 chrX 94192867 94192926 -82781214 - MLT1A1 LTR MaLR 0 365 307 2420 129 126 5 chrX 94192926 94193306 -82780834 - MSTA LTR MaLR -2 426 1 1343 199 49 57 chrX 94193306 94193613 -82780527 - MLT1A1 LTR MaLR -58 307 2 1214 230 71 88 chrX 94193752 94194361 -82779779 - L1MC5 LINE L1 -744 7217 6605 1477 259 56 47 chrX 94194410 94194534 -82779606 - L1MC4a LINE L1 -1778 6030 5909 1026 212 15 5 chrX 94194534 94194737 -82779403 + MER3 DNA MER1_type 1 205 -4 1477 259 56 47 chrX 94194737 94195145 -82778995 - L1MC4a LINE L1 -1899 5909 5493 1549 144 82 94 chrX 94195681 94195750 -82778390 - MSTA LTR MaLR 0 428 360 2640 48 0 0 chrX 94195750 94196061 -82778079 - AluY SINE Alu 0 311 1 1549 144 82 94 chrX 94196061 94196332 -82777808 - MSTA LTR MaLR -68 360 92 2235 179 5 12 chrX 94196476 94196878 -82777262 - MST-int LTR MaLR -416 1235 837 6081 177 11 9 chrX 94196881 94197222 -82776918 - L1 LINE L1 -2670 4895 4556 198 0 0 0 chrX 94197222 94197244 -82776896 + (CTTG)n Simple_repeat Simple_repeat 2 23 0 2012 132 3 3 chrX 94197244 94197540 -82776600 - AluJb SINE Alu -16 296 1 6081 177 11 9 chrX 94197540 94198757 -82775383 - L1 LINE L1 -3008 4557 3331 * 9170 153 31 51 chrX 94198753 94200686 -82773454 - L1 LINE L1 -5525 2040 16 2023 239 52 14 chrX 94200705 94201095 -82773045 - L1MB7 LINE L1 -10 6174 5800 381 43 0 0 chrX 94201095 94201142 -82772998 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2002 131 0 14 chrX 94201142 94201427 -82772713 - AluSg SINE Alu -29 281 3 2023 239 52 14 chrX 94201427 94201617 -82772523 - L1MB7 LINE L1 -383 5801 5571 968 224 22 5 chrX 94201655 94201878 -82772262 - L1MD3 LINE L1 -400 7595 7369 281 244 11 56 chrX 94201848 94201938 -82772202 - MLT1F1 LTR MaLR -447 120 35 * 297 240 24 40 chrX 94201938 94202063 -82772077 - L1MD3 LINE L1 -879 7116 6994 232 183 56 28 chrX 94202420 94202491 -82771649 + LTR37A LTR ERV1 1 73 -353 266 311 24 66 chrX 94202635 94202847 -82771293 + L2 LINE L2 1714 1916 -1398 357 195 37 0 chrX 94202908 94202990 -82771150 - LTR37A LTR ERV1 -249 177 93 273 29 0 0 chrX 94203058 94203092 -82771048 + (TATG)n Simple_repeat Simple_repeat 1 34 0 314 300 18 32 chrX 94203186 94203339 -82770801 + MIR SINE MIR 16 165 -67 1274 262 105 56 chrX 94203585 94204100 -82770040 - MLT1F1 LTR MaLR 0 567 3 35 54 0 0 chrX 94204238 94204294 -82769846 + AT_rich Low_complexity Low_complexity 1 56 0 353 115 0 0 chrX 94304475 94304527 -82669613 - MSTB2 LTR MaLR -399 58 7 2402 156 32 40 chrX 94304620 94305094 -82669046 - MER101 LTR ERV1 0 474 5 375 282 212 26 chrX 94305271 94305399 -82668741 - L1MDa LINE L1 -4480 2060 1957 1639 267 42 2 chrX 94305399 94305830 -82668310 - LTR16A LTR ERVL -2 448 1 375 282 212 26 chrX 94305830 94306041 -82668099 - L1MDa LINE L1 -4583 1957 1658 192 152 0 0 chrX 94306656 94306689 -82667451 + CT-rich Low_complexity Low_complexity 3 35 0 1282 223 41 16 chrX 94309035 94309353 -82664787 + MER101 LTR ERV1 149 474 0 1021 231 62 55 chrX 94309660 94309901 -82664239 + Charlie1b DNA MER1_type 102 349 -2412 2338 64 0 7 chrX 94309901 94310228 -82663912 - AluY SINE Alu 0 311 2 1021 231 62 55 chrX 94310228 94310389 -82663751 + Charlie1b DNA MER1_type 349 507 -16 2102 200 80 10 chrX 94311339 94311824 -82662316 - MER39B-int LTR ERV1 -4942 1389 871 2975 182 35 47 chrX 94311880 94311919 -82662221 - MER39B-int LTR ERV1 -5681 650 612 3153 163 29 8 chrX 94311919 94312435 -82661705 - MER1A DNA MER1_type 0 527 1 2975 182 35 47 chrX 94312435 94313053 -82661087 - MER39B-int LTR ERV1 -5719 612 1 3367 163 43 18 chrX 94313058 94313118 -82661022 - MER39B LTR ERV1 -35 618 561 2328 59 21 0 chrX 94313118 94313406 -82660734 + AluY SINE Alu 1 294 -17 3367 163 43 18 chrX 94313406 94313948 -82660192 - MER39B LTR ERV1 -92 561 1 1608 239 10 7 chrX 94313955 94314365 -82659775 - MLT1B-int LTR MaLR -929 442 32 1203 203 28 128 chrX 94314391 94314819 -82659321 - MLT1B LTR MaLR -2 388 4 222 37 0 0 chrX 94314961 94314988 -82659152 + (CA)n Simple_repeat Simple_repeat 2 28 0 234 0 0 0 chrX 94314990 94315016 -82659124 + (TA)n Simple_repeat Simple_repeat 1 26 0 359 231 0 44 chrX 94317071 94317162 -82656978 - MIR SINE MIR -109 153 67 265 343 128 0 chrX 94317489 94317591 -82656549 - MIR SINE MIR -133 129 15 400 295 12 58 chrX 94317610 94317783 -82656357 - MER5A DNA MER1_type -22 167 3 585 279 30 19 chrX 94319087 94319294 -82654846 - MIR SINE MIR -44 218 16 678 82 0 0 chrX 94319417 94319502 -82654638 - AluY SINE Alu -16 295 211 217 0 29 29 chrX 94319515 94319549 -82654591 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 8165 47 8 2 chrX 94319554 94321278 -82652862 - L1PA5 LINE L1 -15 6139 4409 567 274 149 19 chrX 94321297 94321505 -82652635 - MIR SINE MIR -3 259 25 190 317 83 110 chrX 94321617 94321989 -82652151 + L2 LINE L2 2898 3259 -13 457 253 54 36 chrX 94322486 94322652 -82651488 - MIR SINE MIR -76 186 18 284 331 38 8 chrX 94322882 94323015 -82651125 - MIR3 SINE MIR -28 180 44 262 259 32 65 chrX 94323682 94323867 -82650273 + (GGATG)n Simple_repeat Simple_repeat 2 180 0 892 238 14 31 chrX 94324496 94324719 -82649421 + MER20 DNA MER1_type 1 219 0 248 51 0 26 chrX 94327183 94327222 -82646918 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 1054 41 0 0 chrX 94327222 94327343 -82646797 - L1PA3 LINE L1 -24 6131 6011 370 332 47 16 chrX 94327489 94327679 -82646461 + L2 LINE L2 2873 3068 -204 342 123 0 0 chrX 94328036 94328093 -82646047 + (TAA)n Simple_repeat Simple_repeat 1 57 0 431 215 42 105 chrX 94328649 94328840 -82645300 - L1MC4 LINE L1 0 8042 7864 4950 164 51 10 chrX 94328966 94329794 -82644346 + MER21B LTR ERV1 1 862 -1 528 272 56 12 chrX 94330568 94330730 -82643410 + L2 LINE L2 1268 1436 -1878 386 233 111 5 chrX 94330960 94331097 -82643043 - L1ME3A LINE L1 -254 5912 5767 24388 27 0 0 chrX 94331097 94334601 -82639539 + L1PA2 LINE L1 2652 6155 0 3375 39 3 0 chrX 94334605 94334990 -82639150 + L1PA4 LINE L1 5770 6155 0 463 195 26 78 chrX 94335009 94335163 -82638977 - L1MA7 LINE L1 -92 6199 6054 201 278 0 0 chrX 94335163 94335217 -82638923 + A-rich Low_complexity Low_complexity 1 54 0 365 260 49 61 chrX 94335253 94335499 -82638641 - L1M4 LINE L1 -3201 2945 2703 21 0 0 0 chrX 94335506 94335527 -82638613 + AT_rich Low_complexity Low_complexity 1 21 0 1590 217 6 3 chrX 94335570 94335888 -82638252 - MER101 LTR ERV1 -4 470 152 317 146 0 0 chrX 94335920 94335968 -82638172 - MER101 LTR ERV1 -275 199 152 183 100 0 0 chrX 94335993 94336023 -82638117 + (TG)n Simple_repeat Simple_repeat 1 30 0 1647 164 57 97 chrX 94336024 94336519 -82637621 - L1MA9 LINE L1 -162 6150 5676 261 295 0 0 chrX 94336910 94336971 -82637169 - MER113 DNA MER1_type? -8 513 453 1378 139 39 10 chrX 94336981 94337189 -82636951 - L1PB4 LINE L1 -1 6155 5942 235 235 82 0 chrX 94337276 94337361 -82636779 - MER113 DNA MER1_type? -386 135 44 641 253 82 0 chrX 94337412 94337558 -82636582 + MIR SINE MIR 35 192 -70 792 263 136 5 chrX 94337561 94337774 -82636366 + MIR SINE MIR 2 242 -20 1896 166 3 3 chrX 94337834 94338141 -82635999 + AluJo SINE Alu 3 309 -3 314 305 0 0 chrX 94338434 94338516 -82635624 - MIR SINE MIR -120 142 61 16222 114 37 12 chrX 94338947 94339561 -82634579 - Tigger1 DNA MER2_type 0 2418 1821 7289 57 17 0 chrX 94339561 94341174 -82632966 + L1PA6 LINE L1 4516 6143 -11 16222 114 37 12 chrX 94341174 94342918 -82631222 - Tigger1 DNA MER2_type -597 1821 1 653 224 73 20 chrX 94342924 94343149 -82630991 - MIR SINE MIR -26 236 1 579 236 92 20 chrX 94343324 94343519 -82630621 - MER3 DNA MER1_type 0 209 1 454 136 0 0 chrX 94343746 94343812 -82630328 - L1PA16 LINE L1 -11 6155 6090 659 279 74 9 chrX 94344156 94344371 -82629769 - MER102a DNA MER1_type -29 301 73 487 243 64 1 chrX 94344682 94344853 -82629287 - L1MC4a LINE L1 -322 5856 5680 315 281 70 44 chrX 94345301 94345415 -82628725 + MIR SINE MIR 20 136 -126 2669 210 51 27 chrX 94345549 94346097 -82628043 - REP3 LTR ERV 0 562 2 5425 103 39 1 chrX 94346135 94346914 -82627226 + LTR25 LTR ERV1 1 566 -3 33049 112 25 25 chrX 94346919 94351710 -82622430 + LTR25-int LTR ERV1 1 4796 -2200 2553 25 0 0 chrX 94351710 94351992 -82622148 - L1PA4 LINE L1 -3 6152 5871 33049 112 25 25 chrX 94351992 94352705 -82621435 + LTR25-int LTR ERV1 4796 5507 -1489 44331 45 2 1 chrX 94352728 94358876 -82615264 - L1PA3 LINE L1 0 6155 3 250 279 101 57 chrX 94359431 94359589 -82614551 - Charlie1b DNA MER1_type -312 211 47 183 42 0 0 chrX 94361064 94361088 -82613052 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1719 39 0 0 chrX 94361088 94361292 -82612848 - L1PA4 LINE L1 -12 6143 5940 1936 199 80 14 chrX 94362044 94362467 -82611673 - MSTB2 LTR MaLR 0 457 7 286 133 0 0 chrX 94462522 94462567 -82511573 - LTR8A LTR ERV1 -129 598 554 2759 134 26 22 chrX 94462705 94463199 -82510941 - LTR8A LTR ERV1 -231 496 1 4352 143 20 4 chrX 94463459 94464157 -82509983 + MER50 LTR ERV1 1 709 -25 3908 184 36 40 chrX 94464689 94465513 -82508627 + MER21B LTR ERV1 40 860 -3 607 281 20 0 chrX 94465828 94465981 -82508159 - MIR SINE MIR -2 260 105 1308 82 0 0 chrX 94466042 94466200 -82507940 - AluSg/x SINE Alu -5 307 150 227 292 0 0 chrX 94467375 94467423 -82506717 + L2 LINE L2 3246 3293 -20 349 317 131 7 chrX 94467918 94468063 -82506077 - MIR3 SINE MIR -23 185 23 259 290 30 50 chrX 94468107 94468207 -82505933 - MIR SINE MIR -59 203 106 2352 88 3 0 chrX 94468229 94468541 -82505599 + AluSp SINE Alu 1 313 0 703 289 22 26 chrX 94468599 94468831 -82505309 + MIR SINE MIR 17 247 -15 189 0 0 0 chrX 94469736 94469757 -82504383 + (TTCTC)n Simple_repeat Simple_repeat 5 25 0 2252 110 7 3 chrX 94469989 94470399 -82503741 - AluSp SINE Alu 0 411 1 1044 193 208 50 chrX 94470822 94471164 -82502976 + MSTD LTR MaLR 1 396 0 231 333 0 13 chrX 94471246 94471324 -82502816 - MIR SINE MIR 0 262 186 182 65 65 0 chrX 94471445 94471476 -82502664 + T-rich Low_complexity Low_complexity 3 35 0 2364 92 0 3 chrX 94471537 94471829 -82502311 - AluSq SINE Alu -22 291 1 398 301 43 12 chrX 94471853 94472109 -82502031 - L1ME2 LINE L1 -235 5929 5666 931 74 25 0 chrX 94472139 94472260 -82501880 + AluSg SINE Alu 1 124 -186 834 107 0 0 chrX 94472259 94472380 -82501760 - AluSg SINE Alu -189 121 1 * 300 343 47 30 chrX 94472389 94472558 -82501582 - L1ME2 LINE L1 -1103 5043 4872 215 211 35 0 chrX 94473168 94473225 -82500915 + (TAA)n Simple_repeat Simple_repeat 2 60 0 205 278 167 0 chrX 94475081 94475135 -82499005 + L2 LINE L2 3190 3252 -20 1292 152 0 36 chrX 94475140 94475364 -82498776 - AluJo SINE Alu -10 302 87 475 328 57 29 chrX 94475452 94475684 -82498456 - MIR SINE MIR -12 250 17 412 310 21 8 chrX 94475924 94476087 -82498053 - MIR SINE MIR -63 145 31 556 218 36 0 chrX 94476185 94476295 -82497845 + FLAM_A SINE Alu 10 123 -19 2514 76 0 0 chrX 94476904 94477208 -82496932 + AluSx SINE Alu 1 304 -8 2250 110 7 0 chrX 94477208 94477517 -82496623 + AluSp SINE Alu 1 311 -2 2302 92 17 0 chrX 94477591 94477885 -82496255 + AluSg SINE Alu 1 299 -11 284 282 71 0 chrX 94478144 94478229 -82495911 + MIR SINE MIR 20 110 -152 1964 123 3 36 chrX 94478235 94478537 -82495603 + AluJb SINE Alu 11 302 -10 2332 120 8 1 chrX 94478576 94478946 -82495194 - LTR49 LTR ERV1 -175 447 1 657 200 20 13 chrX 94478946 94479095 -82495045 + MLT1A1 LTR MaLR 216 365 0 464 288 4 83 chrX 94479222 94479451 -82494689 - L2 LINE L2 0 3313 3103 1958 136 17 0 chrX 94479474 94479775 -82494365 + AluSx SINE Alu 1 306 -6 192 333 12 12 chrX 94479998 94480079 -82494061 + MER5A DNA MER1_type 7 87 -102 * 336 260 20 30 chrX 94480023 94480123 -82494017 - MER5A DNA MER1_type -20 169 71 182 220 186 17 chrX 94480143 94480202 -82493938 + MER5A DNA MER1_type 115 183 -6 2333 107 3 3 chrX 94480202 94480511 -82493629 - AluSx SINE Alu -3 309 1 2409 78 0 50 chrX 94480701 94481023 -82493117 - AluSp SINE Alu -7 306 1 415 224 24 0 chrX 94481052 94481137 -82493003 - MER81 DNA DNA 0 114 28 206 322 35 9 chrX 94481733 94481848 -82492292 + CT-rich Low_complexity Low_complexity 5 122 0 633 269 4 113 chrX 94482130 94482242 -82491898 - MIR SINE MIR -14 248 178 1725 133 0 0 chrX 94482242 94482483 -82491657 - AluSx SINE Alu -28 284 44 633 269 4 113 chrX 94482483 94482627 -82491513 - MIR SINE MIR -84 178 20 199 314 0 0 chrX 94482863 94482914 -82491226 - L2 LINE L2 -1 3271 3221 357 321 126 6 chrX 94483924 94484083 -82490057 + MIR3 SINE MIR 30 207 -1 1678 178 28 7 chrX 94484703 94484990 -82489150 + AluJb SINE Alu 1 293 -19 2290 103 3 3 chrX 94485790 94486092 -82488048 - AluSq SINE Alu -11 302 1 309 301 10 0 chrX 94487540 94487643 -82486497 + GA-rich Low_complexity Low_complexity 3 106 0 694 185 0 31 chrX 94488064 94488194 -82485946 + L2 LINE L2 3188 3313 0 216 280 191 94 chrX 94490415 94490787 -82483353 - L2 LINE L2 -6 3266 2859 236 283 11 70 chrX 94491529 94491716 -82482424 + GA-rich Low_complexity Low_complexity 2 177 0 482 288 16 0 chrX 94494068 94494193 -82479947 - MIR3 SINE MIR -20 188 62 735 333 5 5 chrX 94494776 94494995 -82479145 + MIR SINE MIR 6 224 -38 527 272 53 44 chrX 94495802 94496008 -82478132 + MIR SINE MIR 21 228 -34 351 259 103 46 chrX 94497352 94497526 -82476614 - MIR3 SINE MIR -5 203 20 249 257 131 91 chrX 94498049 94498224 -82475916 - MIR SINE MIR -3 259 78 587 297 115 19 chrX 94499122 94499331 -82474809 - MIR SINE MIR -14 248 20 635 275 16 48 chrX 94499887 94500076 -82474064 - MER5A DNA MER1_type 0 189 7 374 321 68 26 chrX 94500086 94500397 -82473743 + L1ME4a LINE L1 5592 5915 -206 749 280 44 16 chrX 94500476 94500726 -82473414 + MIR SINE MIR 3 259 -3 203 256 0 0 chrX 94500798 94500837 -82473303 + polypurine Low_complexity Low_complexity 2 40 0 713 286 100 12 chrX 94501431 94501672 -82472468 - MIR SINE MIR 0 262 1 329 361 0 0 chrX 94502387 94502509 -82471631 - MIR3 SINE MIR -3 205 84 336 135 0 0 chrX 94502831 94502883 -82471257 - L2 LINE L2 0 3313 3262 2400 166 46 0 chrX 94503056 94503513 -82470627 + MER90 LTR ERV1 69 546 -68 272 248 146 18 chrX 94503514 94503649 -82470491 - MIR SINE MIR -61 147 53 423 0 0 0 chrX 94503858 94503905 -82470235 + (TG)n Simple_repeat Simple_repeat 2 48 0 2460 77 3 0 chrX 94504445 94504744 -82469396 + AluSg SINE Alu 1 300 -10 4334 93 4 86 chrX 94505046 94505769 -82468371 + MER4A LTR ERV1 1 664 0 2317 85 197 3 chrX 94506071 94506446 -82467694 + LTR7 LTR ERV1 1 448 -2 14522 125 11 27 chrX 94506448 94509279 -82464861 + HERVH LTR ERV1 1 2994 -4719 6528 147 132 113 chrX 94509263 94510317 -82463823 + HERVH LTR ERV1 3140 4408 -3305 * 1016 143 0 0 chrX 94510317 94510478 -82463662 + AluSq SINE Alu 148 308 -5 6528 147 132 113 chrX 94510478 94511235 -82462905 + HERVH LTR ERV1 4408 5149 -2564 1477 103 13 26 chrX 94511226 94511459 -82462681 + HERVH LTR ERV1 5590 5819 -1894 * 2744 82 13 13 chrX 94511459 94511849 -82462291 + HERVH LTR ERV1 7324 7713 0 2251 82 53 6 chrX 94511849 94512219 -82461921 + LTR7 LTR ERV1 1 448 -2 1956 138 3 0 chrX 94512594 94512892 -82461248 + AluJb SINE Alu 2 300 -12 360 0 0 0 chrX 94513030 94513070 -82461070 + (A)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chrX 94513131 94513158 -82460982 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 757 218 19 19 chrX 94513169 94513325 -82460815 + FRAM SINE Alu 1 154 -22 2246 67 0 13 chrX 94513334 94513634 -82460506 + AluY SINE Alu 1 296 -15 1313 126 0 0 chrX 94513649 94513832 -82460308 + AluSp SINE Alu 1 183 -130 309 283 152 0 chrX 94513907 94514006 -82460134 - MIR SINE MIR -12 250 137 1834 150 67 25 chrX 94514208 94514568 -82459572 + THE1C LTR MaLR 1 375 0 1009 210 0 6 chrX 94514568 94514749 -82459391 - LTR8 LTR ERV1 -5 686 507 2925 137 26 22 chrX 94514883 94515381 -82458759 - LTR8A LTR ERV1 -227 500 1 1170 111 72 0 chrX 94515641 94515822 -82458318 + MER50 LTR ERV1 1 194 -540 432 215 42 105 chrX 94516044 94516235 -82457905 + L1MC4 LINE L1 7864 8042 0 396 111 0 0 chrX 94516791 94516854 -82457286 + (TTA)n Simple_repeat Simple_repeat 1 63 0 371 332 47 16 chrX 94517211 94517401 -82456739 - L2 LINE L2 -204 3068 2873 1051 41 0 0 chrX 94517547 94517707 -82456433 + L1PA3 LINE L1 6011 6170 0 828 238 14 31 chrX 94520172 94520395 -82453745 - MER20 DNA MER1_type 0 219 1 262 259 32 65 chrX 94521024 94521209 -82452931 + (CATCC)n Simple_repeat Simple_repeat 2 180 0 296 331 38 8 chrX 94521876 94522009 -82452131 + MIR3 SINE MIR 44 180 -28 478 266 77 36 chrX 94522239 94522461 -82451679 + MIR SINE MIR 18 248 -14 186 317 83 110 chrX 94522902 94523274 -82450866 - L2 LINE L2 -13 3259 2898 588 274 149 19 chrX 94523386 94523594 -82450546 + MIR SINE MIR 25 259 -3 7774 47 6 0 chrX 94523613 94525337 -82448803 + L1PA5 LINE L1 4409 6139 -15 217 0 29 29 chrX 94525342 94525376 -82448764 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 626 148 0 0 chrX 94525389 94525490 -82448650 + AluY SINE Alu 211 311 0 611 279 30 19 chrX 94525597 94525804 -82448336 + MIR SINE MIR 16 218 -44 412 295 12 58 chrX 94527110 94527283 -82446857 + MER5A DNA MER1_type 3 167 -22 267 343 128 0 chrX 94527302 94527404 -82446736 + MIR SINE MIR 15 129 -133 371 231 0 44 chrX 94527731 94527822 -82446318 + MIR SINE MIR 67 153 -109 342 0 0 0 chrX 94529877 94529915 -82444225 + (TA)n Simple_repeat Simple_repeat 1 38 0 222 37 0 0 chrX 94529917 94529944 -82444196 + (TG)n Simple_repeat Simple_repeat 2 28 0 1084 199 35 133 chrX 94530084 94530511 -82443629 + MLT1B LTR MaLR 4 388 -2 1594 239 10 7 chrX 94530537 94530947 -82443193 + MLT1B-int LTR MaLR 32 442 -929 3361 158 46 22 chrX 94530954 94531496 -82442644 + MER39B LTR ERV1 1 561 -92 2267 59 17 0 chrX 94531496 94531785 -82442355 - AluY SINE Alu -17 294 1 3361 158 46 22 chrX 94531785 94531845 -82442295 + MER39B LTR ERV1 561 618 -35 2965 188 35 47 chrX 94531850 94532468 -82441672 + MER39B-int LTR ERV1 1 612 -5719 2957 163 29 8 chrX 94532468 94532984 -82441156 + MER1A DNA MER1_type 1 527 0 2965 188 35 47 chrX 94532984 94533023 -82441117 + MER39B-int LTR ERV1 612 650 -5681 2068 200 80 10 chrX 94533079 94533564 -82440576 + MER39B-int LTR ERV1 871 1389 -4942 978 231 62 55 chrX 94534514 94534675 -82439465 - Charlie1b DNA MER1_type -2254 507 349 2247 64 0 7 chrX 94534675 94535002 -82439138 + AluY SINE Alu 2 311 0 978 231 62 55 chrX 94535002 94535243 -82438897 - Charlie1b DNA MER1_type -2412 349 102 1195 211 39 57 chrX 94535550 94535594 -82438546 - MER101 LTR ERV1 0 474 431 2819 6 0 0 chrX 94535594 94535906 -82438234 - AluYb8 SINE Alu -6 312 1 1195 211 39 57 chrX 94535906 94536193 -82437947 - MER101 LTR ERV1 -43 431 149 192 152 0 0 chrX 94538539 94538572 -82435568 + GA-rich Low_complexity Low_complexity 3 35 0 487 255 195 69 chrX 94539108 94539399 -82434741 + L1MDa LINE L1 1588 1950 -4590 1530 264 42 2 chrX 94539399 94539830 -82434310 + LTR16A LTR ERVL 1 448 -2 487 255 195 69 chrX 94539830 94539958 -82434182 + L1MDa LINE L1 1950 2060 -4480 2253 162 30 38 chrX 94540135 94540609 -82433531 + MER101 LTR ERV1 5 474 0 1950 199 80 14 chrX 94540702 94541125 -82433015 + MSTB2 LTR MaLR 7 457 0 1720 39 0 0 chrX 94541877 94542105 -82432035 + L1PA4 LINE L1 5940 6167 0 249 338 57 6 chrX 94543579 94543736 -82430404 + Charlie1b DNA MER1_type 47 211 -312 43706 54 8 1 chrX 94544291 94550018 -82424122 + L1PA4 LINE L1 3 5784 -347 43760 32 21 1 chrX 94550019 94556050 -82418090 + L1PA2 LINE L1 1 6155 0 3162 39 3 0 chrX 94556054 94556439 -82417701 + L1PA4 LINE L1 5770 6155 0 406 195 26 78 chrX 94556458 94556612 -82417528 - L1MA7 LINE L1 -92 6199 6054 201 278 0 0 chrX 94556612 94556666 -82417474 + A-rich Low_complexity Low_complexity 1 54 0 263 268 49 61 chrX 94556702 94556948 -82417192 - L1M4 LINE L1 -3201 2945 2703 21 0 0 0 chrX 94556955 94556976 -82417164 + AT_rich Low_complexity Low_complexity 1 21 0 1445 218 6 3 chrX 94557019 94557336 -82416804 - MER101 LTR ERV1 -4 470 153 295 146 0 0 chrX 94557369 94557417 -82416723 - MER101 LTR ERV1 -275 199 152 1534 167 56 96 chrX 94557462 94557964 -82416176 - L1MA9 LINE L1 -153 6159 5678 241 295 0 0 chrX 94558357 94558418 -82415722 - MER113 DNA MER1_type? -8 513 453 1273 139 39 10 chrX 94558428 94558636 -82415504 - L1PB4 LINE L1 -1 6155 5942 237 139 0 0 chrX 94558765 94558808 -82415332 - MER113 DNA MER1_type? -435 86 44 643 253 82 0 chrX 94558859 94559005 -82415135 + MIR SINE MIR 35 192 -70 806 263 136 5 chrX 94559008 94559221 -82414919 + MIR SINE MIR 2 242 -20 1922 166 3 3 chrX 94559281 94559588 -82414552 + AluJo SINE Alu 3 309 -3 321 305 0 0 chrX 94559881 94559963 -82414177 - MIR SINE MIR -120 142 61 190 284 89 83 chrX 94560173 94560342 -82413798 + L2 LINE L2 1705 1874 -1440 14994 113 37 12 chrX 94560398 94561008 -82413132 - Tigger1 DNA MER2_type -4 2414 1821 6811 57 17 0 chrX 94561008 94562621 -82411519 + L1PA6 LINE L1 4516 6143 -11 14994 113 37 12 chrX 94562621 94564365 -82409775 - Tigger1 DNA MER2_type -597 1821 1 661 224 73 20 chrX 94564371 94564596 -82409544 - MIR SINE MIR -26 236 1 788 154 74 0 chrX 94564771 94564920 -82409220 + MER3 DNA MER1_type 48 207 -2 515 126 35 0 chrX 94564920 94564966 -82409174 - MER3 DNA MER1_type -160 49 1 422 136 0 0 chrX 94565176 94565242 -82408898 - L1PA16 LINE L1 -11 6155 6090 577 279 74 9 chrX 94565586 94565801 -82408339 - MER102b DNA MER1_type -29 312 84 438 231 41 3 chrX 94566112 94566273 -82407867 - L1MC4a LINE L1 -322 5856 5691 183 247 130 13 chrX 94566359 94566436 -82407704 + L3 LINE CR1 614 699 -878 319 281 70 44 chrX 94566731 94566845 -82407295 + MIR SINE MIR 20 136 -126 2426 212 51 27 chrX 94566979 94567527 -82406613 - REP3 LTR ERV 0 562 2 5071 102 39 1 chrX 94567565 94568344 -82405796 + LTR25 LTR ERV1 1 566 -3 30420 113 24 24 chrX 94568349 94573140 -82401000 + LTR25-int LTR ERV1 1 4796 -2200 2398 25 0 0 chrX 94573140 94573422 -82400718 - L1PA4 LINE L1 -3 6152 5871 30420 113 24 24 chrX 94573422 94574135 -82400005 + LTR25-int LTR ERV1 4796 5507 -1489 38607 33 5 1 chrX 94574158 94579850 -82394290 - L1PA3 LINE L1 0 6155 442 7997 110 7 36 chrX 94579863 94580652 -82393488 + LTR25-int LTR ERV1 4332 5142 -1854 2289 103 7 3 chrX 94580652 94580962 -82393178 + AluSx SINE Alu 2 312 0 261 0 0 0 chrX 94580964 94580993 -82393147 + (TA)n Simple_repeat Simple_repeat 1 29 0 7997 110 7 36 chrX 94580993 94581447 -82392693 + LTR25-int LTR ERV1 5143 5609 -1387 2414 71 0 10 chrX 94581447 94581744 -82392396 + AluY SINE Alu 1 294 -17 7997 110 7 36 chrX 94581744 94582062 -82392078 + LTR25-int LTR ERV1 5609 6996 0 4225 150 29 36 chrX 94582062 94582856 -82391284 + LTR25 LTR ERV1 1 788 -6 706 279 23 6 chrX 94582970 94583142 -82390998 + MIR SINE MIR 23 197 -65 375 278 47 38 chrX 94583502 94583714 -82390426 + L1ME LINE L1 5384 5597 -524 294 237 66 0 chrX 94583714 94583790 -82390350 + MIR SINE MIR 97 177 -85 636 140 0 0 chrX 94583792 94583892 -82390248 - LTR40b LTR ERVL -2 460 361 723 175 0 2 chrX 94583894 94584137 -82390003 + AluJb SINE Alu 5 298 -14 1232 276 25 35 chrX 94584137 94584572 -82389568 - LTR40a LTR ERVL -88 431 1 1413 200 37 12 chrX 94584572 94584903 -82389237 - HERVL40 LTR ERVL 0 5530 2780 375 382 22 6 chrX 94584869 94585191 -82388949 - MER89-int LTR ERV1 -395 6406 6080 * 16711 194 50 17 chrX 94585254 94588265 -82385875 - HERVL40 LTR ERVL -1670 3860 688 196 225 0 0 chrX 94588265 94588305 -82385835 + L2 LINE L2 1629 1668 -1646 16711 194 50 17 chrX 94588305 94588579 -82385561 - HERVL40 LTR ERVL -4842 688 425 1937 163 68 32 chrX 94588579 94589020 -82385120 - LTR2B LTR ERV1 0 490 34 2099 177 28 26 chrX 94589044 94589473 -82384667 - HERVL40 LTR ERVL -5100 430 1 839 303 73 20 chrX 94589499 94589856 -82384284 - LTR40a LTR ERVL -49 470 95 3612 98 94 5 chrX 94589858 94590442 -82383698 + LTR9B LTR ERV1 9 644 0 609 167 0 0 chrX 94590442 94590543 -82383597 - LTR40b LTR ERVL -361 101 1 1842 152 19 0 chrX 94591189 94591512 -82382628 + L1MC3 LINE L1 6685 7013 -772 180 111 0 0 chrX 94591514 94591541 -82382599 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 3799 154 19 4 chrX 94591542 94592245 -82381895 + L1MC3 LINE L1 7063 7775 -10 202 286 209 22 chrX 94592286 94592377 -82381763 + L2 LINE L2 2949 3056 -216 424 321 51 7 chrX 94592545 94592682 -82381458 - L2 LINE L2 -2 3270 3128 497 290 162 11 chrX 94592729 94592929 -82381211 - MIR SINE MIR -27 235 10 311 185 19 0 chrX 94592934 94592988 -82381152 + L2 LINE L2 3257 3311 -2 200 322 0 0 chrX 94593357 94593416 -82380724 - L2 LINE L2 -3 3310 3252 13330 42 0 1 chrX 94593480 94595891 -82378249 - L1PA5 LINE L1 -4 6150 3747 1192 50 0 0 chrX 94595893 94596054 -82378086 - L1PA5 LINE L1 -3063 3083 2923 2121 227 58 0 chrX 94596089 94596640 -82377500 + L1ME3A LINE L1 5396 5978 -192 636 122 0 0 chrX 94596642 94596732 -82377408 + 5S rRNA rRNA 1 90 -31 476 174 204 36 chrX 94596736 94596903 -82377237 + L1ME3A LINE L1 5970 6164 -6 228 341 8 53 chrX 94596947 94597079 -82377061 - MER5A DNA MER1_type -1 188 63 208 281 79 34 chrX 94597238 94597327 -82376813 - MIR3 SINE MIR -27 181 89 419 283 14 58 chrX 94598100 94598238 -82375902 - MER5A DNA MER1_type -2 187 56 2296 88 7 14 chrX 94598562 94598859 -82375281 + AluSp SINE Alu 1 295 -18 275 178 82 14 chrX 94599073 94599146 -82374994 - MIR SINE MIR -139 123 46 530 172 0 10 chrX 94599547 94599646 -82374494 + MIR SINE MIR 90 187 -75 804 312 90 13 chrX 94599665 94600043 -82374097 - LTR33 LTR ERVL 0 521 115 2984 169 74 30 chrX 94600226 94600471 -82373669 - L1MB8 LINE L1 -140 6536 6303 4209 156 46 1 chrX 94600471 94601169 -82372971 - MER44D DNA MER2_type -3 602 2 2984 169 74 30 chrX 94601169 94601953 -82372187 - L1MB8 LINE L1 -373 6303 5465 233 300 22 120 chrX 94602328 94602595 -82371545 - MER102a DNA MER1_type 0 330 90 213 308 64 0 chrX 94602821 94602899 -82371241 + L2 LINE L2 3170 3252 -20 353 304 10 10 chrX 94602916 94603018 -82371122 + MIR SINE MIR 51 152 -110 346 274 82 34 chrX 94603463 94603609 -82370531 - MER5A DNA MER1_type -36 153 1 2152 129 0 0 chrX 94603759 94604061 -82370079 + AluSc SINE Alu 1 302 -7 22 56 0 0 chrX 94604383 94604419 -82369721 + AT_rich Low_complexity Low_complexity 1 36 0 303 253 13 13 chrX 94605383 94605462 -82368678 - Charlie4 DNA MER1_type -1 1960 1882 2444 218 13 21 chrX 94605765 94606383 -82367757 - L1MB8 LINE L1 -1279 5365 4753 4293 205 34 7 chrX 94606394 94607307 -82366833 - L1MA9 LINE L1 -38 6274 5337 1499 232 13 13 chrX 94607341 94607720 -82366420 - L1MB8 LINE L1 -1875 4769 4391 * 1974 260 4 22 chrX 94607717 94608210 -82365930 - L1MB8 LINE L1 -5951 591 108 340 314 32 32 chrX 94609171 94609327 -82364813 - MIR SINE MIR -83 179 24 4162 179 41 22 chrX 94609620 94611275 -82362865 - L1MB8 LINE L1 -144 6034 4349 205 115 19 19 chrX 94611332 94611384 -82362756 + (CA)n Simple_repeat Simple_repeat 2 53 0 2373 220 56 47 chrX 94611400 94612239 -82361901 - L1MC5 LINE L1 -540 7421 6564 479 213 37 49 chrX 94612692 94612856 -82361284 + MER103 DNA DNA 4 165 -1 276 30 0 0 chrX 94613008 94613041 -82361099 + (TG)n Simple_repeat Simple_repeat 1 33 0 225 0 0 0 chrX 94613122 94613147 -82360993 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 304 0 0 chrX 94613560 94613639 -82360501 + L3b LINE CR1 1144 1222 -361 237 211 35 0 chrX 94613677 94613734 -82360406 + Charlie7 DNA MER1_type 43 101 -2511 * 324 114 19 177 chrX 94613730 94613888 -82360252 + Charlie7 DNA MER1_type 2440 2572 -40 22 0 0 0 chrX 94614022 94614044 -82360096 + AT_rich Low_complexity Low_complexity 1 22 0 655 321 32 56 chrX 94614063 94614471 -82359669 - L2 LINE L2 0 3313 2916 32 43 0 0 chrX 94615246 94615292 -82358848 + GC_rich Low_complexity Low_complexity 1 46 0 271 163 20 0 chrX 94618247 94618296 -82355844 + L3 LINE CR1 1520 1569 -8 366 301 42 57 chrX 94618528 94618721 -82355419 - MIR SINE MIR -71 191 2 24 67 0 0 chrX 94619505 94619550 -82354590 + AT_rich Low_complexity Low_complexity 1 45 0 2026 154 0 10 chrX 94619592 94619904 -82354236 + AluJb SINE Alu 2 310 -2 23 33 0 0 chrX 94620228 94620258 -82353882 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chrX 94620428 94620458 -82353682 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chrX 94622533 94622562 -82351578 + AT_rich Low_complexity Low_complexity 1 29 0 758 282 118 36 chrX 94623337 94623617 -82350523 + L3 LINE CR1 1274 1576 -1 304 336 9 0 chrX 94625284 94625391 -82348749 - MER117 DNA MER1_type -53 144 37 520 208 19 0 chrX 94625460 94625566 -82348574 - FRAM SINE Alu -5 171 64 814 111 24 0 chrX 94625649 94625775 -82348365 + L1PB4 LINE L1 6028 6156 0 1058 172 0 0 chrX 94626379 94626542 -82347598 - AluJb SINE Alu -19 293 131 459 0 0 0 chrX 94626542 94626593 -82347547 + (TG)n Simple_repeat Simple_repeat 2 52 0 2000 115 4 0 chrX 94626596 94626874 -82347266 - AluSx SINE Alu -31 281 3 184 351 157 8 chrX 94626949 94627083 -82347057 + L3b LINE CR1 1430 1583 0 1887 162 36 19 chrX 94627313 94627672 -82346468 - MLT1A1 LTR MaLR 0 365 1 830 258 114 63 chrX 94628637 94629382 -82344758 - L1ME4a LINE L1 -1 6120 5338 223 140 0 40 chrX 94629909 94629959 -82344181 + (TA)n Simple_repeat Simple_repeat 1 48 0 23725 78 5 7 chrX 94629959 94633993 -82340147 - L1PA7 LINE L1 -9 6145 2123 564 140 0 0 chrX 94633994 94634094 -82340046 + AluSc SINE Alu 209 308 -1 269 283 9 75 chrX 94634258 94634327 -82339813 - MIR3 SINE MIR -20 188 127 1776 132 64 17 chrX 94634327 94634622 -82339518 + AluSg SINE Alu 2 310 0 269 283 9 75 chrX 94634622 94634658 -82339482 - MIR3 SINE MIR -81 127 90 7567 155 8 0 chrX 94634855 94637194 -82336946 + L1PA14 LINE L1 3873 6152 -9 235 235 0 0 chrX 94638643 94638694 -82335446 + (CATA)n Simple_repeat Simple_repeat 4 54 0 15192 32 7 0 chrX 94639296 94641740 -82332400 - L1PA3 LINE L1 -177 5978 3522 405 284 28 64 chrX 94641856 94642106 -82332034 - L1ME2 LINE L1 -13 6151 5911 6092 62 1 0 chrX 94642205 94643000 -82331140 + L1PA6 LINE L1 5366 6161 0 3790 129 25 42 chrX 94643003 94643685 -82330455 + L1PA15 LINE L1 5496 6165 0 250 105 53 0 chrX 94643701 94643739 -82330401 - FLAM SINE Alu -8 125 86 233 333 0 23 chrX 94643805 94643892 -82330248 + CT-rich Low_complexity Low_complexity 3 87 0 10175 172 25 13 chrX 94644296 94647010 -82327130 - L1PA15 LINE L1 -141 6024 3276 341 47 26 1 chrX 94647114 94647180 -82326960 - AluY SINE Alu -256 46 1 1222 193 0 14 chrX 94647181 94647558 -82326582 - L1M4 LINE L1 -699 5475 5107 * 4030 152 3 8 chrX 94647546 94648258 -82325882 - L1M4 LINE L1 -1429 4717 4010 1729 160 37 13 chrX 94648257 94648638 -82325502 - L1 LINE L1 -1534 4612 4223 * 3454 159 23 3 chrX 94648630 94649248 -82324892 - L1MC3 LINE L1 0 7785 7156 17998 47 2 4 chrX 94649349 94651660 -82322480 - L1P LINE L1 -1368 4778 2472 4084 76 26 0 chrX 94651660 94652198 -82321942 - HERVL LTR ERVL -4740 914 363 2998 55 3 0 chrX 94652686 94653065 -82321075 - L1PA7 LINE L1 -6 6148 5769 12731 34 8 0 chrX 94653082 94655395 -82318745 - L1PA4 LINE L1 -1 6154 3822 8503 146 30 15 chrX 94658460 94659469 -82314671 + L1M1 LINE L1 2271 3263 -4302 2298 84 47 0 chrX 94659469 94659768 -82314372 - AluSp SINE Alu 0 313 1 8503 146 30 15 chrX 94659768 94660802 -82313338 + L1M1 LINE L1 3263 4352 -3213 432 262 9 0 chrX 94661963 94662070 -82312070 + Charlie1b DNA MER1_type 102 209 -314 284 264 19 9 chrX 94662956 94663062 -82311078 + L1MCc LINE L1 24 130 -6293 309 202 48 48 chrX 94664549 94664633 -82309507 - MLT1C LTR MaLR -2 388 305 583 264 63 6 chrX 94664635 94664809 -82309331 - MLT1C LTR MaLR -280 187 4 1251 293 38 8 chrX 94664838 94665230 -82308910 - MLT1B-int LTR MaLR -18 1353 950 2600 271 34 27 chrX 94665543 94665976 -82308164 - MLT1B-int LTR MaLR -484 887 458 3285 199 19 3 chrX 94665976 94666619 -82307521 - MER39B LTR ERV1 0 653 1 2600 271 34 27 chrX 94666619 94667066 -82307074 - MLT1B-int LTR MaLR -913 458 1 1060 199 12 107 chrX 94667068 94667414 -82306726 - MLT1B LTR MaLR -2 388 76 2050 117 7 13 chrX 94667459 94667767 -82306373 + MER1A DNA MER1_type 224 529 0 1906 207 98 14 chrX 94667852 94668340 -82305800 + LTR49-int LTR ERV1 855 1383 -4948 553 248 50 71 chrX 94668465 94668663 -82305477 + LTR49-int LTR ERV1 1372 1565 -4766 300 243 19 48 chrX 94669269 94669372 -82304768 + MER94 DNA DNA 1 100 -34 527 262 19 19 chrX 94669639 94669799 -82304341 + MIR SINE MIR 13 174 -34 427 248 116 85 chrX 94671436 94671755 -82302385 - MLT1H1 LTR MaLR -190 365 37 216 155 56 14 chrX 94672637 94672708 -82301432 + (TA)n Simple_repeat Simple_repeat 2 75 0 1398 207 27 14 chrX 94672709 94672877 -82301263 - AluJb SINE Alu -13 299 124 279 0 0 0 chrX 94672877 94672908 -82301232 + (TG)n Simple_repeat Simple_repeat 2 32 0 1398 207 27 14 chrX 94672908 94673034 -82301106 - AluJb SINE Alu -188 124 1 244 316 20 0 chrX 94674113 94674211 -82299929 + L1M4 LINE L1 2694 2793 -3353 230 140 20 0 chrX 94674223 94674273 -82299867 - LTR66 LTR ERVL -157 453 403 6744 83 9 2 chrX 94674570 94677232 -82296908 + L1PA7 LINE L1 3300 6153 -1 363 73 0 0 chrX 94677253 94677308 -82296832 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 263 133 100 17 chrX 94677309 94677369 -82296771 + MER39B-int LTR ERV1 2202 2266 -2614 633 225 20 62 chrX 94677440 94677670 -82296470 + MER39B-int LTR ERV1 1350 2100 -4231 502 229 81 88 chrX 94677684 94677968 -82296172 + LTR57-int LTR ERVL 881 1162 -4181 * 11809 168 39 41 chrX 94677716 94679275 -82294865 + MER39B-int LTR ERV1 2963 4595 -1736 2181 136 0 0 chrX 94679275 94679585 -82294555 - AluSg SINE Alu 0 310 1 11809 168 39 41 chrX 94679585 94680933 -82293207 + MER39B-int LTR ERV1 4595 5945 -386 678 245 8 68 chrX 94680991 94681228 -82292912 + MER39B-int LTR ERV1 5961 6183 -148 3474 166 17 12 chrX 94681290 94681940 -82292200 + MER39B LTR ERV1 1 653 0 1330 270 47 26 chrX 94681951 94682373 -82291767 + MLT1B-int LTR MaLR 454 884 -487 1416 272 47 5 chrX 94682688 94683092 -82291048 + MLT1B-int LTR MaLR 950 1370 -1 740 259 16 5 chrX 94683106 94683291 -82290849 + MLT1B LTR MaLR 1 187 -203 258 215 0 31 chrX 94683280 94683345 -82290795 + MLT1B LTR MaLR 377 439 -28 * 4922 140 19 5 chrX 94683347 94683712 -82290428 - L1P3 LINE L1 -5677 784 426 329 43 21 0 chrX 94683712 94683759 -82290381 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 4922 140 19 5 chrX 94683759 94684162 -82289978 - L1P3 LINE L1 -6035 426 5 1022 186 75 81 chrX 94684175 94684470 -82289670 - MER39B-int LTR ERV1 -4668 1663 1371 1880 219 92 18 chrX 94684594 94685106 -82289034 - MER39B-int LTR ERV1 -4949 1382 833 3110 155 8 21 chrX 94685158 94685692 -82288448 - MER1A DNA MER1_type 0 527 1 2751 193 39 31 chrX 94685694 94686310 -82287830 - MER39B-int LTR ERV1 -5710 621 1 3141 181 51 3 chrX 94686313 94686905 -82287235 - MER39B LTR ERV1 -33 620 1 1538 231 24 19 chrX 94686912 94687336 -82286804 - MLT1B-int LTR MaLR -929 442 17 854 228 37 75 chrX 94687354 94687747 -82286393 - MLT1B LTR MaLR -2 465 21 27 0 0 0 chrX 94687911 94687938 -82286202 + AT_rich Low_complexity Low_complexity 1 27 0 1320 217 27 14 chrX 94688657 94688783 -82285357 + AluJb SINE Alu 1 124 -188 441 0 0 0 chrX 94688783 94688832 -82285308 + (CA)n Simple_repeat Simple_repeat 2 50 0 1320 217 27 14 chrX 94688832 94689000 -82285140 + AluJb SINE Alu 124 299 -13 203 88 29 0 chrX 94689015 94689049 -82285091 + (TA)n Simple_repeat Simple_repeat 2 36 0 386 238 43 91 chrX 94690141 94690351 -82283789 + MLT1H1 LTR MaLR 202 401 -154 184 341 32 24 chrX 94691434 94691557 -82282583 - L2 LINE L2 -184 3088 2965 449 270 52 16 chrX 94691888 94692108 -82282032 - MIR3 SINE MIR -4 258 13 751 189 8 121 chrX 94692758 94693007 -82281133 + MLT1B LTR MaLR 165 385 -5 2857 249 35 28 chrX 94693012 94693458 -82280682 + MLT1B-int LTR MaLR 1 442 -929 3197 204 27 2 chrX 94693458 94694095 -82280045 + MER39B LTR ERV1 1 653 0 2857 249 35 28 chrX 94694095 94694529 -82279611 + MLT1B-int LTR MaLR 442 887 -484 1191 292 46 10 chrX 94694842 94695232 -82278908 + MLT1B-int LTR MaLR 950 1353 -18 710 253 17 0 chrX 94695261 94695435 -82278705 + MLT1B LTR MaLR 4 180 -210 378 256 0 0 chrX 94695437 94695523 -82278617 + MLT1H1 LTR MaLR 382 467 0 256 267 19 9 chrX 94696994 94697099 -82277041 - L1MCc LINE L1 -6293 130 25 300 324 9 0 chrX 94697982 94698087 -82276053 - Charlie1b DNA MER1_type -314 209 104 28 0 0 0 chrX 94699570 94699598 -82274542 + AT_rich Low_complexity Low_complexity 1 28 0 1983 144 17 0 chrX 94700476 94700774 -82273366 - AluSx SINE Alu -9 303 1 8642 160 13 45 chrX 94700829 94701097 -82273043 - L1PA12 LINE L1 -10 6158 5883 2265 138 11 16 chrX 94701097 94701474 -82272666 - THE1C LTR MaLR 0 375 1 8642 160 13 45 chrX 94701474 94703754 -82270386 - L1PA12 LINE L1 -285 5883 3673 370 329 64 16 chrX 94703962 94704211 -82269929 - LTR16A LTR ERVL -18 432 172 294 316 90 18 chrX 94704555 94704833 -82269307 - L1MEd LINE L1 -4881 1238 941 644 187 27 13 chrX 94704866 94705016 -82269124 + L1MA7 LINE L1 5059 5210 -936 374 252 32 32 chrX 94705118 94705241 -82268899 + MER41E LTR ERV1 54 176 -336 358 297 14 14 chrX 94705214 94705362 -82268778 + MER41B LTR ERV1 283 430 -205 * 4212 201 20 45 chrX 94705583 94705805 -82268335 + L1MA7 LINE L1 5202 5428 -863 2035 125 7 0 chrX 94705805 94706094 -82268046 - AluSg SINE Alu -19 291 1 4212 201 20 45 chrX 94706094 94706985 -82267155 + L1MA7 LINE L1 5428 6286 -5 762 287 25 13 chrX 94706990 94707255 -82266885 + L1ME LINE L1 5460 5667 -499 187 269 26 64 chrX 94707494 94707572 -82266568 + MIR SINE MIR 26 100 -108 1797 49 0 0 chrX 94708487 94708712 -82265428 + L1P LINE L1 4973 5197 -949 216 158 0 0 chrX 94708742 94708780 -82265360 + T-rich Low_complexity Low_complexity 1 38 0 2927 126 23 29 chrX 94708792 94709275 -82264865 - L1MA4 LINE L1 -7 6293 5814 31032 107 8 26 chrX 94709275 94710775 -82263365 - L1PA7 LINE L1 -3 6466 4941 2362 93 3 0 chrX 94710775 94711077 -82263063 - AluSp SINE Alu -10 303 1 31032 107 8 26 chrX 94711077 94715642 -82258498 - L1PA7 LINE L1 -1528 4941 420 384 59 0 0 chrX 94715642 94715693 -82258447 + (CAA)n Simple_repeat Simple_repeat 2 52 0 31032 107 8 26 chrX 94715693 94716099 -82258041 - L1PA7 LINE L1 -6049 420 8 2365 138 2 23 chrX 94716110 94716507 -82257633 - L1MA4 LINE L1 -476 5824 5436 1618 276 49 19 chrX 94716500 94717530 -82256610 - L1ME LINE L1 -436 5734 4672 * 432 280 107 0 chrX 94718039 94718189 -82255951 + L2 LINE L2 2269 2434 -880 413 271 31 0 chrX 94718217 94718313 -82255827 + L2 LINE L2 3174 3272 0 384 331 65 36 chrX 94718488 94718852 -82255288 + L2 LINE L2 2725 3099 -173 196 328 30 0 chrX 94718891 94718958 -82255182 - MIR3 SINE MIR -7 201 133 362 253 257 25 chrX 94719181 94719383 -82254757 - MIR SINE MIR -12 250 2 1889 122 56 0 chrX 94719721 94720009 -82254131 - AluSx SINE Alu -8 304 1 235 254 103 63 chrX 94720048 94720143 -82253997 + L2 LINE L2 3180 3283 -30 1798 178 81 54 chrX 94720143 94720588 -82253552 - MSTB2 LTR MaLR 0 457 1 235 254 103 63 chrX 94720588 94720618 -82253522 + L2 LINE L2 3283 3310 -3 275 311 25 83 chrX 94720752 94720936 -82253204 + L1ME3A LINE L1 4344 4502 -1644 1548 249 49 24 chrX 94720936 94721386 -82252754 - LTR40c LTR ERVL -4 461 1 275 311 25 83 chrX 94721386 94721526 -82252614 + L1ME3A LINE L1 4502 4649 -1497 2457 188 84 31 chrX 94721874 94722454 -82251686 + L1ME3A LINE L1 5551 6161 -9 1076 292 107 17 chrX 94722594 94722756 -82251384 + L1ME3A LINE L1 5192 5338 -832 2747 67 43 13 chrX 94722756 94723128 -82251012 + L1PA7 LINE L1 5769 6151 -3 1076 292 107 17 chrX 94723128 94723598 -82250542 + L1ME3A LINE L1 5338 5881 -289 6026 229 65 150 chrX 94723688 94725874 -82248266 - L2 LINE L2 -4 3309 940 1865 139 187 9 chrX 94725874 94726205 -82247935 - MLT1B LTR MaLR 0 390 1 6026 229 65 150 chrX 94726205 94727010 -82247130 - L2 LINE L2 -2373 940 671 513 239 68 8 chrX 94727010 94727127 -82247013 - FLAM_A SINE Alu -9 124 1 6026 229 65 150 chrX 94727127 94727730 -82246410 - L2 LINE L2 -2642 671 19 21004 188 35 27 chrX 94727857 94732769 -82241371 + L1PA13 LINE L1 7 5232 -2369 225 0 0 0 chrX 94732769 94732794 -82241346 + (CAA)n Simple_repeat Simple_repeat 3 27 0 21004 188 35 27 chrX 94732794 94735169 -82238971 + L1PA13 LINE L1 5232 7587 -14 218 160 0 60 chrX 94735372 94735422 -82238718 + L2 LINE L2 3263 3309 -4 192 264 66 77 chrX 94735777 94735868 -82238272 - L2 LINE L2 -5 3267 3178 2258 95 0 3 chrX 94739126 94739421 -82234719 + AluSx SINE Alu 3 296 -16 258 276 95 38 chrX 94741100 94741205 -82232935 - MIR3 SINE MIR -6 202 92 1268 216 108 28 chrX 94741456 94741817 -82232323 + MLT1B LTR MaLR 1 390 0 1906 149 3 7 chrX 94741894 94742189 -82231951 - AluJo SINE Alu -18 294 1 2059 125 0 0 chrX 94742352 94742728 -82231412 - AluSg SINE Alu 0 376 1 322 264 112 51 chrX 94743000 94743178 -82230962 - L3 LINE CR1 -203 1374 1186 293 224 35 47 chrX 94743244 94743329 -82230811 - L3 LINE CR1 -823 754 671 7109 79 25 8 chrX 94744165 94745171 -82228969 - L1PA8 LINE L1 -2 6170 5161 606 297 49 0 chrX 94745188 94745373 -82228767 + MIR SINE MIR 52 245 -17 1266 180 87 136 chrX 94745817 94745854 -82228286 - MLT2D LTR ERVL 0 414 377 545 0 15 0 chrX 94745854 94745919 -82228221 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 1266 180 87 136 chrX 94745919 94746293 -82227847 - MLT2D LTR ERVL -37 377 23 337 233 0 0 chrX 94746487 94746560 -82227580 - Tigger5 DNA MER2_type 0 2323 2251 336 154 0 0 chrX 94746532 94746584 -82227556 - Tigger5 DNA MER2_type -2271 52 1 * 573 246 69 34 chrX 94746915 94747090 -82227050 + MIR SINE MIR 8 188 -74 301 197 53 0 chrX 94747394 94747470 -82226670 + MER94 DNA DNA 21 100 -34 2209 97 10 0 chrX 94747795 94748093 -82226047 - AluSc SINE Alu -7 302 2 3143 143 15 0 chrX 94748133 94748600 -82225540 + MER101 LTR ERV1 1 474 0 282 73 0 0 chrX 94749196 94749237 -82224903 + (TG)n Simple_repeat Simple_repeat 2 42 0 369 62 0 0 chrX 94749302 94749350 -82224790 + (TA)n Simple_repeat Simple_repeat 2 49 0 2038 123 0 17 chrX 94749412 94749712 -82224428 + AluJb SINE Alu 1 295 -17 438 262 9 0 chrX 94751607 94751714 -82222426 + Charlie1b DNA MER1_type 102 209 -314 286 264 19 9 chrX 94752598 94752704 -82221436 + L1MCc LINE L1 24 130 -6293 313 202 48 48 chrX 94754191 94754275 -82219865 - MLT1C LTR MaLR -2 388 305 582 264 63 6 chrX 94754277 94754451 -82219689 - MLT1C LTR MaLR -280 187 4 1254 293 38 8 chrX 94754480 94754872 -82219268 - MLT1B-int LTR MaLR -18 1353 950 2615 272 34 27 chrX 94755185 94755618 -82218522 - MLT1B-int LTR MaLR -484 887 458 3475 199 19 3 chrX 94755618 94756261 -82217879 - MER39B LTR ERV1 0 653 1 2615 272 34 27 chrX 94756261 94756708 -82217432 - MLT1B-int LTR MaLR -913 458 1 1062 199 12 107 chrX 94756710 94757056 -82217084 - MLT1B LTR MaLR -2 388 76 2056 117 7 13 chrX 94757101 94757409 -82216731 + MER1A DNA MER1_type 224 529 0 1925 207 98 14 chrX 94757494 94757982 -82216158 + MER21B-int LTR ERV1 855 1383 -4948 557 248 50 71 chrX 94758107 94758305 -82215835 + MER21B-int LTR ERV1 1372 1565 -4766 300 243 19 48 chrX 94758911 94759014 -82215126 + MER94 DNA DNA 1 100 -34 527 262 19 19 chrX 94759281 94759441 -82214699 + MIR SINE MIR 13 174 -34 427 248 116 85 chrX 94761078 94761397 -82212743 - MLT1H1 LTR MaLR -190 365 37 203 88 29 0 chrX 94762306 94762340 -82211800 + (TA)n Simple_repeat Simple_repeat 1 35 0 1398 207 27 14 chrX 94762355 94762523 -82211617 - AluJb SINE Alu -13 299 124 261 0 0 0 chrX 94762523 94762552 -82211588 + (TG)n Simple_repeat Simple_repeat 2 30 0 1398 207 27 14 chrX 94762552 94762678 -82211462 - AluJb SINE Alu -188 124 1 244 316 20 0 chrX 94763757 94763855 -82210285 + L1M4 LINE L1 2694 2793 -3353 235 135 0 19 chrX 94763867 94763919 -82210221 - LTR66 LTR ERVL -157 453 403 6773 82 9 2 chrX 94764216 94766878 -82207262 + L1PA7 LINE L1 3300 6153 -1 429 76 0 0 chrX 94766901 94766967 -82207173 + (GA)n Simple_repeat Simple_repeat 2 67 0 649 225 10 39 chrX 94767092 94767322 -82206818 + MER21B-int LTR ERV1 1350 2100 -4231 502 229 81 88 chrX 94767336 94767620 -82206520 + LTR57-int LTR ERVL 881 1162 -4181 * 11727 170 39 41 chrX 94767368 94768927 -82205213 + MER21B-int LTR ERV1 2963 4595 -1736 2181 136 0 0 chrX 94768927 94769237 -82204903 - AluSg SINE Alu 0 310 1 11727 170 39 41 chrX 94769237 94770585 -82203555 + MER21B-int LTR ERV1 4595 5945 -386 678 245 8 68 chrX 94770643 94770880 -82203260 + MER21B-int LTR ERV1 5961 6183 -148 4476 160 53 5 chrX 94820965 94821965 -82152175 + L1MB8 LINE L1 5128 6177 -1 243 247 0 26 chrX 94821960 94822037 -82152103 + L1MEc LINE L1 1851 1925 -4471 * 2259 152 56 30 chrX 94822040 94822557 -82151583 + MLT2A2 LTR ERVL 1 553 -1 421 227 68 30 chrX 94822560 94822632 -82151508 + L1MEc LINE L1 1929 1997 -4399 915 219 41 58 chrX 94822632 94822874 -82151266 - MER8 DNA MER2_type 0 239 2 421 227 68 30 chrX 94822874 94822933 -82151207 + L1MEc LINE L1 1997 2065 -4331 * 687 242 6 37 chrX 94822926 94823087 -82151053 + L1M4b LINE L1 663 818 -6041 2431 250 36 31 chrX 94823112 94823694 -82150446 + MER21B LTR ERV1 14 569 -294 1478 171 84 105 chrX 94823694 94824169 -82149971 + MER4C LTR ERV1 1 465 0 2431 250 36 31 chrX 94824169 94824406 -82149734 + MER21B LTR ERV1 569 803 -60 2493 199 62 10 chrX 94824427 94825316 -82148824 + L1M4b LINE L1 814 1825 -5030 715 298 55 25 chrX 94825422 94825861 -82148279 + L1M4b LINE L1 2565 3016 -4122 606 241 94 69 chrX 94826081 94826227 -82147913 + MIR SINE MIR 12 168 -94 2212 113 3 7 chrX 94826227 94826528 -82147612 + AluSg SINE Alu 2 301 -9 606 241 94 69 chrX 94826528 94826626 -82147514 + MIR SINE MIR 168 262 0 663 283 87 21 chrX 94827800 94828086 -82146054 - L2 LINE L2 -1 3271 2967 517 289 45 0 chrX 94828213 94828369 -82145771 - L2 LINE L2 -548 2766 2604 2139 125 6 10 chrX 94828412 94828724 -82145416 - AluSx SINE Alu -1 311 1 348 158 0 0 chrX 94829037 94829094 -82145046 - MER20 DNA MER1_type 0 219 163 450 161 0 0 chrX 94829094 94829187 -82144953 + (TG)n Simple_repeat Simple_repeat 2 94 0 824 187 7 26 chrX 94829205 94829360 -82144780 - MER20 DNA MER1_type -67 152 1 225 255 133 31 chrX 94829947 94830045 -82144095 + MIR SINE MIR 30 137 -71 257 283 0 22 chrX 94830156 94830248 -82143892 + GA-rich Low_complexity Low_complexity 1 90 0 2478 75 3 0 chrX 94830781 94831087 -82143053 + AluSp SINE Alu 5 311 -2 2088 86 52 0 chrX 94831339 94831634 -82142506 + AluSg SINE Alu 2 310 0 2678 42 0 0 chrX 94832654 94832964 -82141176 - AluY SINE Alu -1 310 1 236 53 26 0 chrX 94834361 94834399 -82139741 + (CA)n Simple_repeat Simple_repeat 1 39 0 2458 94 0 0 chrX 94835058 94835367 -82138773 - AluSg SINE Alu 0 310 2 499 240 0 0 chrX 94835558 94835658 -82138482 - MER81 DNA DNA -1 113 14 396 71 0 0 chrX 94835917 94835973 -82138167 + (TC)n Simple_repeat Simple_repeat 1 56 0 303 214 0 0 chrX 94838541 94838611 -82135529 + CT-rich Low_complexity Low_complexity 1 70 0 244 280 75 56 chrX 94840350 94840387 -82133753 + L2 LINE L2 3158 3193 -79 873 138 0 0 chrX 94840387 94840517 -82133623 - FLAM_C SINE Alu -2 131 2 244 280 75 56 chrX 94840517 94840586 -82133554 + L2 LINE L2 3193 3266 -6 185 154 26 0 chrX 94840698 94840737 -82133403 + (CA)n Simple_repeat Simple_repeat 1 40 0 1070 224 50 8 chrX 94840825 94841084 -82133056 + MER50 LTR ERV1 335 604 -130 424 281 23 16 chrX 94841756 94841884 -82132256 + MIR SINE MIR 6 134 -128 626 193 0 179 chrX 94841923 94842048 -82132092 + MIR SINE MIR 78 224 -38 2163 140 0 7 chrX 94842048 94842355 -82131785 + AluJo SINE Alu 3 307 -5 626 193 0 179 chrX 94842355 94842390 -82131750 + MIR SINE MIR 224 192 -70 2402 46 3 3 chrX 94842390 94842706 -82131434 - AluY SINE Alu 0 316 1 626 193 0 179 chrX 94842706 94842766 -82131374 + MIR SINE MIR 191 260 -2 225 269 0 0 chrX 94842986 94843053 -82131087 + GA-rich Low_complexity Low_complexity 1 67 0 2351 106 7 0 chrX 94843187 94843490 -82130650 - AluSx SINE Alu -7 305 1 2354 66 0 60 chrX 94843633 94843951 -82130189 - AluY SINE Alu -12 299 1 2443 71 10 10 chrX 94844282 94844593 -82129547 + AluSq SINE Alu 1 311 -2 360 293 134 55 chrX 94844661 94845226 -82128914 + L2 LINE L2 2440 3055 -217 264 238 69 20 chrX 94845608 94845709 -82128431 - MIR SINE MIR -72 190 85 2622 62 0 0 chrX 94846496 94846802 -82127338 + AluY SINE Alu 1 306 -5 257 286 12 12 chrX 94846805 94846889 -82127251 - MIR3 SINE MIR -6 202 119 445 304 37 42 chrX 94848864 94849055 -82125085 - L2 LINE L2 -4 3268 3079 241 333 31 0 chrX 94849093 94849189 -82124951 - L2 LINE L2 -569 2745 2647 301 328 8 32 chrX 94849242 94849367 -82124773 - L2 LINE L2 -181 3091 2970 219 230 58 46 chrX 94849662 94849749 -82124391 + L2 LINE L2 3185 3272 0 423 0 0 0 chrX 94850564 94850611 -82123529 + (TG)n Simple_repeat Simple_repeat 1 47 0 2327 96 6 3 chrX 94850717 94851029 -82123111 + AluSq SINE Alu 1 313 0 306 155 93 72 chrX 94851609 94851706 -82122434 - L1MC5 LINE L1 -26 7935 7837 257 329 133 14 chrX 94852634 94852777 -82121363 + MER91A DNA MER1_type 1 160 -36 258 196 0 0 chrX 94852831 94852877 -82121263 + MER91A DNA MER1_type 151 196 0 232 233 82 14 chrX 94853395 94853468 -82120672 + MIR SINE MIR 37 114 -94 290 357 55 5 chrX 94853536 94853607 -82120533 - MIR SINE MIR -11 251 185 1144 178 46 0 chrX 94853607 94853804 -82120336 + MER3 DNA MER1_type 1 206 -3 290 357 55 5 chrX 94853804 94853931 -82120209 - MIR SINE MIR -77 185 43 272 337 134 0 chrX 94853973 94854145 -82119995 + MIR SINE MIR 58 252 -10 2072 68 9 110 chrX 94854195 94854521 -82119619 + AluSx SINE Alu 1 293 -19 250 289 62 0 chrX 94854840 94854937 -82119203 + MIR SINE MIR 52 154 -108 957 228 0 21 chrX 94855049 94855242 -82118898 - MER5A DNA MER1_type 0 189 1 194 352 29 9 chrX 94855412 94855517 -82118623 - MIR SINE MIR -72 136 30 213 121 0 0 chrX 94857050 94857083 -82117057 + (A)n Simple_repeat Simple_repeat 1 33 0 410 241 89 0 chrX 94857629 94857741 -82116399 + MIR SINE MIR 48 169 -93 23 0 0 0 chrX 94857845 94857868 -82116272 + AT_rich Low_complexity Low_complexity 1 23 0 1011 216 26 84 chrX 94858084 94858514 -82115626 + L1MC5 LINE L1 7527 7931 -30 524 226 24 30 chrX 94858551 94858719 -82115421 + L1MC5 LINE L1 7783 7949 -12 893 198 146 14 chrX 94859283 94859495 -82114645 + MIR SINE MIR 2 241 -21 23 0 0 0 chrX 94859602 94859625 -82114515 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chrX 94860534 94860562 -82113578 + AT_rich Low_complexity Low_complexity 1 28 0 2140 68 75 0 chrX 94860811 94861089 -82113051 + AluSg1 SINE Alu 2 300 -9 24 53 0 0 chrX 94861457 94861495 -82112645 + AT_rich Low_complexity Low_complexity 1 38 0 772 270 134 27 chrX 94861645 94862086 -82112054 + L1ME4a LINE L1 5477 5964 -157 379 282 138 69 chrX 94862429 94862894 -82111246 + L1ME4a LINE L1 5481 5977 -144 586 128 35 0 chrX 94863288 94863374 -82110766 + Tigger4(Zombi) DNA MER2_type 32 120 -2611 * 1197 94 99 5 chrX 94863373 94863564 -82110576 + Tigger4(Zombi) DNA MER2_type 2523 2731 0 2145 112 13 7 chrX 94863960 94864263 -82109877 - AluSx SINE Alu -7 305 1 297 75 0 0 chrX 94864266 94864306 -82109834 + (T)n Simple_repeat Simple_repeat 1 40 0 1994 97 13 68 chrX 94864634 94864943 -82109197 - AluSg SINE Alu -18 292 1 424 297 57 42 chrX 94864955 94865192 -82108948 - L1MC4a LINE L1 -201 5920 5679 402 238 139 26 chrX 94865213 94865364 -82108776 - MIR SINE MIR -32 230 63 363 343 98 29 chrX 94865730 94866045 -82108095 + L2 LINE L2 1939 2275 -1039 194 338 14 0 chrX 94866408 94866479 -82107661 + L2 LINE L2 3201 3272 0 1910 122 103 43 chrX 94868914 94869282 -82104858 - MLT1B LTR MaLR 0 390 1 303 282 69 83 chrX 94869283 94869631 -82104509 - LTR33 LTR ERVL -156 365 23 217 259 0 19 chrX 94870818 94870872 -82103268 + L2 LINE L2 3215 3267 -5 1750 160 42 7 chrX 94871701 94871989 -82102151 + AluJo SINE Alu 1 298 -14 1436 162 19 38 chrX 94872106 94872372 -82101768 - AluJo SINE Alu -12 300 40 192 113 0 57 chrX 94873104 94873157 -82100983 + (TTTC)n Simple_repeat Simple_repeat 4 53 0 241 232 21 0 chrX 94873301 94873396 -82100744 + (TA)n Simple_repeat Simple_repeat 2 98 0 768 197 8 0 chrX 94873499 94873631 -82100509 + FLAM_A SINE Alu 1 133 0 2184 117 7 0 chrX 94873635 94873933 -82100207 + AluSx SINE Alu 1 300 -12 2146 165 55 16 chrX 94873974 94874355 -82099785 - MSTD LTR MaLR 0 396 1 413 283 46 25 chrX 94874421 94874709 -82099431 + L1MEc LINE L1 2171 2425 -3790 2317 68 26 26 chrX 94875264 94875574 -82098566 + AluY SINE Alu 1 310 -1 418 299 26 87 chrX 94876201 94876465 -82097675 + MIR SINE MIR 9 256 -6 252 0 0 0 chrX 94876905 94876933 -82097207 + (CAA)n Simple_repeat Simple_repeat 3 30 0 668 200 219 19 chrX 94876935 94877150 -82096990 - MIR SINE MIR -3 259 2 964 303 62 3 chrX 94877225 94877562 -82096578 - LTR16B LTR ERVL -10 454 98 585 261 57 64 chrX 94879031 94879311 -82094829 + MLT1I LTR MaLR 81 358 -51 1998 187 111 57 chrX 94880896 94881543 -82092597 - MER69 DNA AcHobo 0 2526 1845 404 284 68 31 chrX 94881884 94882046 -82092094 - MER69 DNA AcHobo -2170 356 189 1124 152 166 9 chrX 94882181 94882392 -82091748 + MER66A LTR ERV1 104 347 -131 196 246 16 33 chrX 94882399 94882460 -82091680 + MER5B DNA MER1_type 90 149 -29 5210 110 24 3 chrX 94882536 94883290 -82090850 - L1PA15 LINE L1 -2 6163 5394 422 75 0 0 chrX 94883291 94883344 -82090796 + L1PA15 LINE L1 5825 5877 -288 2245 176 162 5 chrX 94883348 94883768 -82090372 + MER66B LTR ERV1 1 486 0 5441 233 101 103 chrX 94883768 94884181 -82089959 + MER66B-int LTR ERV1 1 413 -6263 1447 152 287 15 chrX 94884181 94884363 -82089777 - MSTB LTR MaLR 0 426 295 863 109 15 0 chrX 94884363 94884500 -82089640 + (GAAA)n Simple_repeat Simple_repeat 4 142 0 1447 152 287 15 chrX 94884500 94884652 -82089488 - MSTB LTR MaLR -131 295 1 5441 233 101 103 chrX 94884652 94886799 -82087341 + MER66B-int LTR ERV1 413 2558 -4118 2058 153 0 0 chrX 94886799 94887100 -82087040 - AluSx SINE Alu -11 301 1 5441 233 101 103 chrX 94887100 94887528 -82086612 + MER66B-int LTR ERV1 2558 2985 -3691 449 193 44 88 chrX 94887545 94887659 -82086481 + MER4D LTR ERV1 52 160 -712 13990 121 17 25 chrX 94887662 94887777 -82086363 + MER66B-int LTR ERV1 4560 4674 -2002 2854 139 9 19 chrX 94887777 94888008 -82086132 - MSTA LTR MaLR 0 428 201 2317 96 3 0 chrX 94888008 94888301 -82085839 - AluSg SINE Alu -16 294 1 2854 139 9 19 chrX 94888301 94888499 -82085641 - MSTA LTR MaLR -227 201 3 13990 121 17 25 chrX 94888499 94888634 -82085506 + MER66B-int LTR ERV1 4674 4809 -1867 2387 127 36 28 chrX 94888634 94888995 -82085145 + THE1B LTR MaLR 1 364 0 13990 121 17 25 chrX 94888995 94890877 -82083263 + MER66B-int LTR ERV1 4809 6676 0 3203 159 0 22 chrX 94890877 94891374 -82082766 + MER66B LTR ERV1 1 486 0 365 150 0 0 chrX 94891374 94891434 -82082706 - L1P LINE L1 -786 5379 5320 2284 87 10 0 chrX 94891447 94891735 -82082405 + AluY SINE Alu 1 291 -20 1053 164 99 0 chrX 94891739 94891754 -82082386 - L1MA2 LINE L1 -12 7711 7699 510 17 0 0 chrX 94891754 94891813 -82082327 + (TA)n Simple_repeat Simple_repeat 2 60 0 1053 164 99 0 chrX 94891813 94891998 -82082142 - L1MA2 LINE L1 -24 7699 7491 28 0 0 0 chrX 94893100 94893128 -82081012 + AT_rich Low_complexity Low_complexity 1 28 0 5565 102 12 19 chrX 94893773 94894667 -82079473 - L1MA2 LINE L1 -238 7485 6600 1891 106 6 77 chrX 94894681 94895020 -82079120 + MER66-int LTR ERV1 6362 6676 0 20305 158 35 17 chrX 94895030 94898574 -82075566 - L1MA2 LINE L1 -956 6609 2933 1760 196 10 0 chrX 94898574 94898880 -82075260 - AluJo SINE Alu -3 309 1 20305 158 35 17 chrX 94898880 94901519 -82072621 - L1MA2 LINE L1 -4632 2933 343 730 184 24 18 chrX 94901520 94901688 -82072452 + LTR23 LTR ERV1 269 437 0 2167 203 39 72 chrX 94901750 94902417 -82071723 - MLT1E3 LTR MaLR -3 621 1 402 221 0 13 chrX 94902429 94902506 -82071634 - MER69 DNA AcHobo -1150 76 1 1759 158 48 24 chrX 94903016 94903307 -82070833 + AluJb SINE Alu 1 298 -14 2018 152 0 0 chrX 94904195 94904498 -82069642 - AluJb SINE Alu -9 303 1 312 328 103 0 chrX 94904628 94904776 -82069364 - MIR3 SINE MIR -63 145 15 288 0 0 0 chrX 94905458 94905490 -82068650 + (CA)n Simple_repeat Simple_repeat 2 33 0 194 237 0 0 chrX 94905757 94905795 -82068345 + L3 LINE CR1 1540 1577 0 313 370 162 40 chrX 94906059 94906362 -82067778 - L2 LINE L2 -9 3263 2924 518 274 135 21 chrX 94906430 94906764 -82067376 + L1MC4a LINE L1 5568 5931 -239 259 198 25 16 chrX 94906781 94906902 -82067238 + (TA)n Simple_repeat Simple_repeat 1 122 0 230 143 0 0 chrX 94906903 94906945 -82067195 - LTR66 LTR ERVL -171 439 398 * 243 133 0 0 chrX 94906910 94906955 -82067185 + LTR66 LTR ERVL 395 439 -171 566 266 85 17 chrX 94907331 94907508 -82066632 + MIR SINE MIR 3 191 -71 2110 103 29 29 chrX 94907783 94908094 -82066046 + AluY SINE Alu 1 311 0 201 237 40 0 chrX 94908111 94908187 -82065953 + (TA)n Simple_repeat Simple_repeat 1 79 0 188 200 20 40 chrX 94908836 94908886 -82065254 - L2 LINE L2 0 3272 3224 324 244 37 0 chrX 94908893 94908975 -82065165 + L2 LINE L2 2233 2317 -997 1637 189 79 69 chrX 94909484 94909535 -82064605 - MSTD LTR MaLR 0 396 347 2017 135 13 10 chrX 94909535 94909839 -82064301 - AluJo SINE Alu -7 305 1 1637 189 79 69 chrX 94909839 94910179 -82063961 - MSTD LTR MaLR -49 347 1 28 0 0 0 chrX 94911629 94911657 -82062483 + AT_rich Low_complexity Low_complexity 1 28 0 2255 71 10 14 chrX 94912338 94912634 -82061506 - AluY SINE Alu -16 295 1 372 279 71 26 chrX 94913325 94913551 -82060589 - L1ME4a LINE L1 -36 6085 5850 260 179 60 15 chrX 94915925 94915992 -82058148 + L1MCa LINE L1 1995 2064 -4362 249 247 14 14 chrX 94915936 94916009 -82058131 - L1MCa LINE L1 -4362 2064 1992 * 496 254 20 117 chrX 94916801 94916998 -82057142 - L3 LINE CR1 -113 1464 1287 730 251 9 52 chrX 94917032 94917263 -82056877 + MIR SINE MIR 41 261 -1 205 308 64 0 chrX 94917320 94917398 -82056742 - MIR SINE MIR -2 260 178 * 608 316 181 25 chrX 94917368 94917853 -82056287 - L3 LINE CR1 -295 1282 722 236 247 31 52 chrX 94918476 94918573 -82055567 - MIR SINE MIR -118 144 50 1368 172 47 35 chrX 94918576 94918832 -82055308 + AluJb SINE Alu 1 259 -53 214 286 0 32 chrX 94918839 94918852 -82055288 - MIR SINE MIR -200 62 50 197 33 33 0 chrX 94918852 94918882 -82055258 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 214 286 0 32 chrX 94918882 94918931 -82055209 - MIR SINE MIR -212 50 2 462 36 0 0 chrX 94919417 94919473 -82054667 + (CA)n Simple_repeat Simple_repeat 2 57 0 732 176 59 13 chrX 94920032 94920185 -82053955 - MER45 DNA AcHobo 0 1581 1422 1512 182 14 10 chrX 94920185 94920481 -82053659 - L1MC3 LINE L1 -4 7781 7485 * 3691 220 68 24 chrX 94920476 94920914 -82053226 - L1M4 LINE L1 -1538 4608 4191 2404 99 0 0 chrX 94920914 94921227 -82052913 - AluSq SINE Alu 0 313 1 3691 220 68 24 chrX 94921227 94921885 -82052255 - L1M4 LINE L1 -1955 4191 3464 2467 50 0 3 chrX 94921895 94922194 -82051946 + AluY SINE Alu 1 298 -13 642 286 55 0 chrX 94922202 94922384 -82051756 - MER63A DNA MER1_type 0 210 19 577 273 12 6 chrX 94922392 94922564 -82051576 - L1M4 LINE L1 -2685 3461 3289 3749 169 49 13 chrX 94922569 94923257 -82050883 - L1MB7 LINE L1 0 6184 5472 1517 172 19 0 chrX 94923290 94923546 -82050594 + MLT1A1 LTR MaLR 105 365 0 8026 210 25 30 chrX 94923552 94924701 -82049439 - L1MB7 LINE L1 -1948 4198 3045 800 213 0 0 chrX 94924701 94924828 -82049312 - FLAM_A SINE Alu -6 127 1 8026 210 25 30 chrX 94924828 94925400 -82048740 - L1MB7 LINE L1 -3101 3045 2486 2302 125 0 0 chrX 94925400 94925712 -82048428 - AluSq SINE Alu -1 312 1 8026 210 25 30 chrX 94925712 94926078 -82048062 - L1MB7 LINE L1 -3660 2486 2120 2204 44 0 0 chrX 95026081 95026352 -81947788 - L1P LINE L1 -903 5243 4973 758 269 18 9 chrX 95027620 95027841 -81946299 - L1M3 LINE L1 -482 5689 5468 4241 203 16 45 chrX 95027854 95028749 -81945391 - L1MA7 LINE L1 -5 6286 5429 2035 125 7 0 chrX 95028749 95029038 -81945102 + AluSg SINE Alu 1 291 -19 4241 203 16 45 chrX 95029038 95029260 -81944880 - L1MA7 LINE L1 -862 5429 5202 358 297 14 14 chrX 95029481 95029629 -81944511 - MER41B LTR ERV1 -205 430 283 * 374 252 32 32 chrX 95029602 95029725 -81944415 - MER41E LTR ERV1 -336 176 54 661 180 27 13 chrX 95029827 95029977 -81944163 - L1MA7 LINE L1 -936 5210 5059 294 316 90 18 chrX 95030010 95030288 -81943852 + L1MEd LINE L1 941 1238 -4881 370 329 64 16 chrX 95030632 95030881 -81943259 + LTR16A LTR ERVL 172 432 -18 8726 161 2 11 chrX 95031089 95033373 -81940767 + L1PA12 LINE L1 3673 5889 -279 2250 141 11 16 chrX 95033373 95033750 -81940390 + THE1C LTR MaLR 1 375 0 8726 161 2 11 chrX 95033750 95034018 -81940122 + L1PA12 LINE L1 5889 6158 -10 1983 144 17 0 chrX 95034073 95034371 -81939769 + AluSx SINE Alu 1 303 -9 28 0 0 0 chrX 95035249 95035277 -81938863 + AT_rich Low_complexity Low_complexity 1 28 0 300 324 9 0 chrX 95036758 95036863 -81937277 + Charlie1b DNA MER1_type 104 209 -314 256 267 19 9 chrX 95037746 95037851 -81936289 + L1MCc LINE L1 25 130 -6293 378 256 0 0 chrX 95039322 95039408 -81934732 - MLT1H1 LTR MaLR 0 467 382 710 253 17 0 chrX 95039410 95039584 -81934556 - MLT1B LTR MaLR -210 180 4 1195 290 46 10 chrX 95039613 95040003 -81934137 - MLT1B-int LTR MaLR -18 1353 950 2850 249 35 28 chrX 95040316 95040750 -81933390 - MLT1B-int LTR MaLR -484 887 457 3197 204 27 2 chrX 95040750 95041387 -81932753 - MER39B LTR ERV1 0 653 1 2850 249 35 28 chrX 95041387 95041833 -81932307 - MLT1B-int LTR MaLR -914 457 1 713 205 8 121 chrX 95041838 95042087 -81932053 - MLT1B LTR MaLR -5 385 165 449 270 52 16 chrX 95042737 95042957 -81931183 + MIR3 SINE MIR 13 258 -4 184 341 32 24 chrX 95043288 95043411 -81930729 + L2 LINE L2 2965 3088 -184 386 238 43 91 chrX 95044494 95044704 -81929436 - MLT1H1 LTR MaLR -154 401 202 203 88 29 0 chrX 95045793 95045827 -81928313 + (TA)n Simple_repeat Simple_repeat 1 35 0 1345 214 27 14 chrX 95045842 95046010 -81928130 - AluJb SINE Alu -13 299 124 423 0 0 0 chrX 95046010 95046057 -81928083 + (TG)n Simple_repeat Simple_repeat 2 48 0 1345 214 27 14 chrX 95046057 95046183 -81927957 - AluJb SINE Alu -188 124 1 244 316 20 0 chrX 95047262 95047360 -81926780 + L1M4 LINE L1 2694 2793 -3353 235 135 0 19 chrX 95047372 95047424 -81926716 - LTR66 LTR ERVL -157 453 403 6773 82 9 2 chrX 95047721 95050383 -81923757 + L1PA7 LINE L1 3300 6153 -1 411 78 0 0 chrX 95050408 95050472 -81923668 + (GA)n Simple_repeat Simple_repeat 2 65 0 649 225 10 39 chrX 95050597 95050827 -81923313 + MER39B-int LTR ERV1 1350 2100 -4231 502 229 81 88 chrX 95050841 95051125 -81923015 + LTR57-int LTR ERVL 881 1162 -4181 * 11809 168 39 41 chrX 95050873 95052432 -81921708 + MER39B-int LTR ERV1 2963 4595 -1736 2181 136 0 0 chrX 95052432 95052742 -81921398 - AluSg SINE Alu 0 310 1 11809 168 39 41 chrX 95052742 95054090 -81920050 + MER39B-int LTR ERV1 4595 5945 -386 678 245 8 68 chrX 95054148 95054385 -81919755 + MER39B-int LTR ERV1 5961 6183 -148 3474 166 17 12 chrX 95054447 95055097 -81919043 + MER39B LTR ERV1 1 653 0 1330 270 47 26 chrX 95055108 95055530 -81918610 + MLT1B-int LTR MaLR 454 884 -487 1414 265 48 5 chrX 95055856 95056249 -81917891 + MLT1B-int LTR MaLR 961 1370 -1 740 259 16 5 chrX 95056263 95056448 -81917692 + MLT1B LTR MaLR 1 187 -203 258 215 0 31 chrX 95056437 95056502 -81917638 + MLT1B LTR MaLR 377 439 -28 * 4941 140 19 5 chrX 95056504 95056869 -81917271 - L1P3 LINE L1 -5677 784 426 293 47 23 0 chrX 95056869 95056912 -81917228 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 4941 140 19 5 chrX 95056912 95057315 -81916825 - L1P3 LINE L1 -6035 426 5 1022 186 75 81 chrX 95057328 95057623 -81916517 - MER39B-int LTR ERV1 -4668 1663 1371 1895 217 92 18 chrX 95057747 95058259 -81915881 - MER39B-int LTR ERV1 -4949 1382 833 3110 155 8 21 chrX 95058311 95058845 -81915295 - MER1A DNA MER1_type 0 527 1 2751 193 39 31 chrX 95058847 95059463 -81914677 - MER39B-int LTR ERV1 -5710 621 1 3141 181 51 3 chrX 95059466 95060058 -81914082 - MER39B LTR ERV1 -33 620 1 624 201 7 14 chrX 95060065 95060209 -81913931 - MLT1C-int LTR MaLR -929 442 300 432 262 9 0 chrX 95061263 95061370 -81912770 + Charlie1b DNA MER1_type 102 209 -314 284 264 19 9 chrX 95062254 95062360 -81911780 + L1MCc LINE L1 24 130 -6293 309 202 48 48 chrX 95063847 95063931 -81910209 - MLT1C LTR MaLR -2 388 305 583 264 63 6 chrX 95063933 95064107 -81910033 - MLT1C LTR MaLR -280 187 4 1251 293 38 8 chrX 95064136 95064528 -81909612 - MLT1B-int LTR MaLR -18 1353 950 2585 272 34 27 chrX 95064841 95065274 -81908866 - MLT1B-int LTR MaLR -484 887 458 3285 199 19 3 chrX 95065274 95065917 -81908223 - MER39B LTR ERV1 0 653 1 2585 272 34 27 chrX 95065917 95066364 -81907776 - MLT1B-int LTR MaLR -913 458 1 1060 199 12 107 chrX 95066366 95066712 -81907428 - MLT1B LTR MaLR -2 388 76 2056 117 7 13 chrX 95066757 95067065 -81907075 + MER1A DNA MER1_type 224 529 0 1905 207 98 14 chrX 95067150 95067638 -81906502 + LTR49-int LTR ERV1 855 1383 -4948 553 248 50 71 chrX 95067763 95067961 -81906179 + LTR49-int LTR ERV1 1372 1565 -4766 300 243 19 48 chrX 95068567 95068670 -81905470 + MER94 DNA DNA 1 100 -34 527 262 19 19 chrX 95068937 95069097 -81905043 + MIR SINE MIR 13 174 -34 427 248 116 85 chrX 95070734 95071053 -81903087 - MLT1H1 LTR MaLR -190 365 37 203 88 29 0 chrX 95071961 95071995 -81902145 + (TA)n Simple_repeat Simple_repeat 1 35 0 1377 210 27 14 chrX 95072010 95072178 -81901962 - AluJb SINE Alu -13 299 124 261 0 0 0 chrX 95072178 95072207 -81901933 + (TG)n Simple_repeat Simple_repeat 2 30 0 1377 210 27 14 chrX 95072207 95072333 -81901807 - AluJb SINE Alu -188 124 1 273 306 20 0 chrX 95073408 95073506 -81900634 + L1M4 LINE L1 2694 2793 -3353 431 78 16 0 chrX 95073530 95073594 -81900546 + (TA)n Simple_repeat Simple_repeat 1 65 0 1147 102 0 0 chrX 95073867 95074024 -81900116 + L1P LINE L1 3300 3456 -2690 496 291 132 14 chrX 95075127 95075347 -81898793 - MIR SINE MIR -4 258 13 489 189 111 105 chrX 95076324 95076477 -81897663 - LTR49-int LTR ERV1 -4766 1565 1412 * 1222 208 213 11 chrX 95076473 95076848 -81897292 - LTR49-int LTR ERV1 -5116 1215 765 2111 120 0 7 chrX 95076884 95077192 -81896948 - MER1A DNA MER1_type 0 529 224 1037 209 41 98 chrX 95077195 95077583 -81896557 + MLT1B LTR MaLR 23 388 -2 2738 247 39 35 chrX 95077585 95078032 -81896108 + MLT1B-int LTR MaLR 1 454 -917 3063 203 27 9 chrX 95078032 95078672 -81895468 + MER39B LTR ERV1 3 653 0 2738 247 39 35 chrX 95078672 95079104 -81895036 + MLT1B-int LTR MaLR 454 883 -488 1265 300 26 8 chrX 95079420 95079800 -81894340 + MLT1B-int LTR MaLR 950 1336 -35 688 221 76 23 chrX 95079842 95080014 -81894126 + MLT1B LTR MaLR 4 167 -223 367 229 12 0 chrX 95080018 95080101 -81894039 + MLT1C LTR MaLR 382 465 -2 327 236 19 9 chrX 95081581 95081687 -81892453 - L1MCc LINE L1 -6293 130 24 452 252 9 0 chrX 95082569 95082676 -81891464 - Charlie1b DNA MER1_type -314 209 102 1403 191 22 4 chrX 95083723 95083879 -81890261 - AluJb SINE Alu -33 279 114 213 39 0 0 chrX 95083879 95083905 -81890235 + (TG)n Simple_repeat Simple_repeat 1 26 0 1403 191 22 4 chrX 95083905 95084021 -81890119 - AluJb SINE Alu -198 114 2 333 0 0 0 chrX 95084154 95084191 -81889949 + (CA)n Simple_repeat Simple_repeat 2 38 0 2619 169 24 9 chrX 95084797 95085264 -81888876 - MER101 LTR ERV1 0 474 1 311 219 14 0 chrX 95085615 95085688 -81888452 - MER94 DNA DNA -34 100 27 400 250 77 48 chrX 95085993 95086161 -81887979 - MIR SINE MIR -72 190 18 283 233 14 14 chrX 95086525 95086598 -81887542 + Tigger5 DNA MER2_type 2251 2323 0 1216 178 73 152 chrX 95086796 95087223 -81886917 + MLT2D LTR ERVL 22 414 0 539 265 53 12 chrX 95087659 95087829 -81886311 - MIR SINE MIR -9 253 77 6883 73 7 1 chrX 95087871 95088878 -81885262 + L1PA8 LINE L1 5161 6172 0 404 257 43 51 chrX 95088922 95089198 -81884942 + L1MEd LINE L1 965 1238 -4881 244 218 18 0 chrX 95089337 95089392 -81884748 + HAL1 LINE L1 1554 1609 -898 1016 301 72 7 chrX 95089409 95089825 -81884315 + LTR16A LTR ERVL 1 443 -7 44038 31 21 1 chrX 95090552 95096583 -81877557 + L1PA2 LINE L1 2 6155 0 21 0 0 0 chrX 95098698 95098719 -81875421 + AT_rich Low_complexity Low_complexity 1 21 0 7357 54 5 5 chrX 95099064 95100025 -81874115 - L1PA5 LINE L1 0 6154 5194 424 256 73 30 chrX 95100489 95100653 -81873487 - MIR SINE MIR -75 187 17 199 377 26 0 chrX 95100880 95100994 -81873146 - MIR3 SINE MIR -28 180 64 236 302 0 88 chrX 95101828 95102020 -81872120 + G-rich Low_complexity Low_complexity 6 180 0 1029 207 9 22 chrX 95102644 95102866 -81871274 + MER20 DNA MER1_type 1 219 0 289 359 33 16 chrX 95105444 95105628 -81868512 + L2 LINE L2 2873 3059 -213 2465 66 3 13 chrX 95105663 95105967 -81868173 - AluSp SINE Alu -12 301 1 183 204 0 0 chrX 95106308 95106357 -81867783 + (TAA)n Simple_repeat Simple_repeat 1 49 0 493 233 31 90 chrX 95106911 95107134 -81867006 - L1MC4 LINE L1 0 8042 7833 4644 160 57 10 chrX 95107230 95108053 -81866087 + MER21B LTR ERV1 1 862 -1 534 259 56 12 chrX 95108811 95108973 -81865167 + L2 LINE L2 1268 1436 -1878 1604 271 53 35 chrX 95109227 95109407 -81864733 - L1ME3A LINE L1 -275 5895 5720 5383 114 19 29 chrX 95109407 95110274 -81863866 - L1MA4 LINE L1 -7 6293 5436 1604 271 53 35 chrX 95110274 95111081 -81863059 - L1ME3A LINE L1 -450 5720 4887 2054 242 73 2 chrX 95111100 95111667 -81862473 - L1PA13 LINE L1 -5819 968 339 * 7659 153 10 1 chrX 95111665 95113526 -81860614 - L1PA12 LINE L1 -5577 2004 7 5158 241 65 128 chrX 95113654 95114257 -81859883 + L2 LINE L2 19 658 -2655 442 239 68 8 chrX 95114257 95114374 -81859766 + FLAM_A SINE Alu 1 124 -9 5158 241 65 128 chrX 95114374 95115166 -81858974 + L2 LINE L2 658 1498 -1815 1673 127 193 15 chrX 95115166 95115497 -81858643 + MLT1B LTR MaLR 1 390 0 5158 241 65 128 chrX 95115497 95117613 -81856527 + L2 LINE L2 1498 3309 -4 1189 291 50 36 chrX 95117634 95118173 -81855967 - L1ME4a LINE L1 -190 5931 5395 2652 49 9 0 chrX 95118173 95118497 -81855643 - L1PA7 LINE L1 -1 6153 5827 1189 291 50 36 chrX 95118497 95118710 -81855430 - L1ME4a LINE L1 -726 5395 5186 2549 182 73 37 chrX 95118849 95119437 -81854703 - L1ME3A LINE L1 -9 6161 5553 349 273 34 95 chrX 95119779 95119918 -81854222 - L1ME3A LINE L1 -1497 4649 4503 1556 236 49 24 chrX 95119918 95120368 -81853772 + LTR40c LTR ERVL 1 461 -4 349 273 34 95 chrX 95120368 95120554 -81853586 - L1ME3A LINE L1 -1643 4503 4344 246 236 102 63 chrX 95120687 95120717 -81853423 - L2 LINE L2 -3 3310 3283 1716 173 81 54 chrX 95120717 95121162 -81852978 + MSTB2 LTR MaLR 1 457 0 246 236 102 63 chrX 95121162 95121258 -81852882 - L2 LINE L2 -30 3283 3179 1884 112 59 30 chrX 95121296 95121599 -81852541 + AluSx SINE Alu 1 312 0 322 320 0 10 chrX 95121940 95122040 -81852100 + MIR SINE MIR 2 100 -162 2030 133 3 0 chrX 95122314 95122600 -81851540 + AluSx SINE Alu 1 287 -25 198 103 0 0 chrX 95122600 95122629 -81851511 + (TA)n Simple_repeat Simple_repeat 1 29 0 193 304 0 29 chrX 95122695 95122764 -81851376 + MIR3 SINE MIR 141 207 -1 238 372 63 22 chrX 95122807 95123076 -81851064 - L2 LINE L2 -189 3083 2804 395 260 29 10 chrX 95123325 95123429 -81850711 - L2 LINE L2 0 3313 3208 350 277 115 7 chrX 95123449 95123597 -81850543 - L2 LINE L2 -880 2434 2271 2167 117 0 0 chrX 95124026 95124332 -81849808 + AluSg SINE Alu 1 306 0 1604 276 45 34 chrX 95124421 95125450 -81848690 + L1ME3A LINE L1 4672 5718 -452 5383 114 19 29 chrX 95125450 95126317 -81847823 + L1MA4 LINE L1 5436 6293 -7 1604 276 45 34 chrX 95126317 95126497 -81847643 + L1ME3A LINE L1 5718 5895 -275 534 259 56 12 chrX 95126751 95126913 -81847227 - L2 LINE L2 -1878 1436 1268 4635 162 57 10 chrX 95127671 95128494 -81845646 - MER21B LTR ERV1 -1 862 1 493 233 31 90 chrX 95128590 95128813 -81845327 + L1MC4 LINE L1 7833 8042 0 183 204 0 0 chrX 95129367 95129416 -81844724 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2465 66 3 13 chrX 95129757 95130061 -81844079 + AluSp SINE Alu 1 301 -12 289 359 33 16 chrX 95130096 95130280 -81843860 - L2 LINE L2 -213 3059 2873 1029 207 9 22 chrX 95132857 95133079 -81841061 - MER20 DNA MER1_type 0 219 1 236 302 0 88 chrX 95133703 95133895 -81840245 + C-rich Low_complexity Low_complexity 6 180 0 199 377 26 0 chrX 95134729 95134843 -81839297 + MIR3 SINE MIR 64 180 -28 424 256 73 30 chrX 95135070 95135234 -81838906 + MIR SINE MIR 17 187 -75 546 251 164 6 chrX 95136191 95136374 -81837766 + MIR SINE MIR 21 232 -30 500 301 71 12 chrX 95136528 95136767 -81837373 + MIR SINE MIR 16 262 0 382 319 16 39 chrX 95138054 95138236 -81835904 - MER5A DNA MER1_type -1 188 11 253 312 140 0 chrX 95138234 95138327 -81835813 + MIR SINE MIR 15 120 -142 * 240 200 0 0 chrX 95138395 95138455 -81835685 + A-rich Low_complexity Low_complexity 1 60 0 285 204 23 68 chrX 95138681 95138769 -81835371 + MIR SINE MIR 67 150 -112 272 274 184 36 chrX 95138850 95139073 -81835067 + MIR SINE MIR 1 256 -6 221 194 15 30 chrX 95139278 95139345 -81834795 + (CCCG)n Simple_repeat Simple_repeat 2 67 0 324 311 82 12 chrX 95142483 95142740 -81831400 - L1ME4a LINE L1 -12 6109 1152 205 288 38 30 chrX 95145221 95145353 -81828787 + L2 LINE L2 1985 2117 -1197 189 283 65 43 chrX 95145387 95145479 -81828661 - MIR SINE MIR -13 249 156 295 338 28 7 chrX 95145509 95145651 -81828489 - MIR SINE MIR -101 161 17 210 255 108 20 chrX 95145670 95145772 -81828368 - MIR SINE MIR -83 179 69 340 222 28 37 chrX 95146456 95146564 -81827576 - MIR SINE MIR -4 258 152 1614 232 52 87 chrX 95146617 95147293 -81826847 - L1ME3A LINE L1 -34 6136 5485 * 2475 260 60 9 chrX 95147291 95148106 -81826034 - L1ME3A LINE L1 -1669 4477 3621 446 261 39 43 chrX 95148166 95148373 -81825767 - L1ME LINE L1 -298 5823 5618 382 246 80 40 chrX 95148602 95148777 -81825363 - L1MC5 LINE L1 -33 7928 7747 501 47 0 0 chrX 95148790 95148854 -81825286 + (TA)n Simple_repeat Simple_repeat 2 65 0 745 172 0 8 chrX 95148854 95148976 -81825164 - FLAM_C SINE Alu -21 122 2 456 96 60 24 chrX 95149028 95149111 -81825029 - L1MB4 LINE L1 -1 6179 6094 525 115 0 0 chrX 95149203 95149290 -81824850 - AluS SINE Alu 0 311 225 614 243 14 0 chrX 95149830 95149978 -81824162 + MIR SINE MIR 87 236 -26 6949 60 9 0 chrX 95150477 95151345 -81822795 - L1PA7 LINE L1 -3 6151 5276 2039 131 3 20 chrX 95151374 95151671 -81822469 + AluJo SINE Alu 1 292 -20 2381 99 6 6 chrX 95151740 95152052 -81822088 - AluSx SINE Alu 0 312 1 294 248 51 57 chrX 95152390 95152547 -81821593 - MIR SINE MIR 0 262 107 184 217 203 14 chrX 95152609 95152678 -81821462 - MIR SINE MIR -70 192 111 538 272 6 6 chrX 95152757 95152930 -81821210 + L1MD2 LINE L1 4465 4637 -1509 1809 153 0 8 chrX 95152930 95153198 -81820942 + AluJo SINE Alu 1 266 -46 4315 189 66 36 chrX 95153225 95153277 -81820863 + L1MD2 LINE L1 5272 5321 -1038 1802 182 10 0 chrX 95153277 95153574 -81820566 + AluJo SINE Alu 1 300 -12 4315 189 66 36 chrX 95153574 95154575 -81819565 + L1MD2 LINE L1 5321 6357 -2 2288 122 0 0 chrX 95154587 95154899 -81819241 + AluSx SINE Alu 1 312 0 30 27 0 0 chrX 95155104 95155141 -81818999 + AT_rich Low_complexity Low_complexity 1 37 0 1499 160 91 9 chrX 95155168 95155499 -81818641 - Charlie1 DNA MER1_type -58 2703 2346 250 211 0 70 chrX 95155510 95155567 -81818573 - Charlie1 DNA MER1_type -2704 57 5 285 229 0 0 chrX 95155573 95155643 -81818497 + L1MC5 LINE L1 7713 7782 -179 360 103 0 0 chrX 95155645 95155703 -81818437 + (CA)n Simple_repeat Simple_repeat 2 59 0 1063 188 30 0 chrX 95155715 95155912 -81818228 + MER82 DNA MER2_type 2 204 -449 2085 208 50 11 chrX 95156205 95156642 -81817498 + MER82 DNA MER2_type 199 652 -1 254 184 0 11 chrX 95156645 95156732 -81817408 + (TA)n Simple_repeat Simple_repeat 1 86 0 321 26 0 0 chrX 95156762 95156800 -81817340 + (TG)n Simple_repeat Simple_repeat 1 38 0 318 184 40 13 chrX 95156825 95156901 -81817239 + L1MC5 LINE L1 7836 7913 -48 1908 204 72 47 chrX 95157784 95158307 -81815833 - MLT1H1 LTR MaLR 0 555 22 437 324 160 33 chrX 95158352 95158926 -81815214 + L2 LINE L2 1859 2505 -809 2198 250 45 72 chrX 95159448 95160272 -81813868 + L1ME LINE L1 1 802 -5268 182 427 0 0 chrX 95160390 95160472 -81813668 + L2 LINE L2 2566 2647 -667 417 294 38 63 chrX 95160711 95160949 -81813191 - MLT1K LTR MaLR -188 400 169 251 130 22 0 chrX 95161154 95161200 -81812940 + MLT1J LTR MaLR 5 51 -460 673 212 120 0 chrX 95161381 95161565 -81812575 + MIR SINE MIR 17 222 -40 287 306 65 48 chrX 95161681 95161910 -81812230 + L2 LINE L2 2654 2886 -428 520 329 148 13 chrX 95161967 95162657 -81811483 + L2 LINE L2 1986 2768 -546 195 433 117 8 chrX 95162684 95162804 -81811336 - L2 LINE L2 -25 3247 3115 248 155 56 0 chrX 95163056 95163127 -81811013 + (TA)n Simple_repeat Simple_repeat 1 75 0 796 275 55 5 chrX 95163875 95164093 -81810047 - MIR SINE MIR -10 252 24 195 42 0 0 chrX 95164102 95164126 -81810014 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2129 175 134 0 chrX 95164368 95164786 -81809354 + MER101 LTR ERV1 1 474 0 1183 173 19 9 chrX 95165036 95165250 -81808890 + AluJo SINE Alu 7 222 -90 4096 128 63 50 chrX 95165250 95165995 -81808145 - LTR1 LTR ERV1 0 785 31 520 160 0 0 chrX 95166062 95166137 -81808003 + AluSg/x SINE Alu 216 290 -19 2059 129 3 7 chrX 95166139 95166433 -81807707 + AluSx SINE Alu 1 293 -19 2263 93 0 0 chrX 95166437 95166769 -81807371 + AluSc SINE Alu 1 332 0 689 290 50 5 chrX 95166792 95167013 -81807127 - MIR SINE MIR -28 234 4 1160 168 0 15 chrX 95167028 95167224 -81806916 - AluJb SINE Alu -14 298 106 252 0 0 0 chrX 95167226 95167254 -81806886 + (TG)n Simple_repeat Simple_repeat 2 29 0 224 313 24 24 chrX 95167386 95167469 -81806671 + L2 LINE L2 2977 3059 -213 1317 180 17 13 chrX 95167923 95168162 -81805978 + L1M4 LINE L1 14 253 -6289 398 266 80 1 chrX 95168201 95168368 -81805772 + L1M4 LINE L1 4915 5092 -1054 1887 132 36 0 chrX 95168511 95168791 -81805349 - AluJb SINE Alu -22 290 1 1343 161 14 0 chrX 95168942 95169153 -81804987 + AluJb SINE Alu 77 290 -22 470 123 161 0 chrX 95169524 95169572 -81804568 + L1P3 LINE L1 6 45 -6416 1901 80 0 51 chrX 95169572 95169847 -81804293 + AluY SINE Alu 44 304 -7 470 123 161 0 chrX 95169847 95169879 -81804261 + L1P3 LINE L1 45 99 -6362 * 9622 120 7 11 chrX 95169870 95171380 -81802760 + L1P3 LINE L1 1178 2680 -3781 240 121 0 0 chrX 95171382 95171415 -81802725 - L1P3 LINE L1 -5251 1210 1178 * 698 67 11 0 chrX 95171406 95171496 -81802644 - L1P3 LINE L1 -6362 99 9 24652 55 0 0 chrX 95171601 95175366 -81798774 + L1PA3 LINE L1 2370 6153 -2 3235 65 0 0 chrX 95175366 95175749 -81798391 + L1PA6 LINE L1 5770 6154 0 2168 233 74 17 chrX 95176140 95176735 -81797405 - MLT1G LTR MaLR 0 590 2 2280 127 0 0 chrX 95176854 95177162 -81796978 + AluSx SINE Alu 1 308 -4 2699 181 63 9 chrX 95177297 95177834 -81796306 + MER90 LTR ERV1 9 574 -1 3464 29 0 0 chrX 95178984 95179366 -81794774 - L1PA4 LINE L1 -4 6151 5770 2302 70 0 0 chrX 95179368 95179641 -81794499 - AluSq SINE Alu -40 273 1 716 223 157 66 chrX 95180043 95180362 -81793778 - MER7A DNA MER2_type 0 346 1 4649 134 26 0 chrX 95180752 95181708 -81792432 + L1MA7 LINE L1 4999 5976 -315 249 161 36 0 chrX 95181719 95181775 -81792365 + L1MA7 LINE L1 6104 6161 -130 491 167 79 0 chrX 95181807 95181933 -81792207 + L1MA7 LINE L1 6156 6291 0 838 75 0 9 chrX 95182064 95182171 -81791969 - AluSg/x SINE Alu -14 296 191 910 222 5 0 chrX 95182216 95182401 -81791739 + MER5A DNA MER1_type 4 189 0 2245 89 0 37 chrX 95182665 95182989 -81791151 + AluSx SINE Alu 1 312 0 202 348 62 62 chrX 95183128 95183352 -81790788 + L2 LINE L2 3027 3250 -22 747 270 22 22 chrX 95184312 95184534 -81789606 + MIR SINE MIR 17 238 -24 365 213 38 159 chrX 95184773 95185012 -81789128 - MIR SINE MIR -8 254 45 1341 193 89 71 chrX 95186564 95186989 -81787151 + LTR16A1 LTR ERVL 14 446 -11 28 61 0 0 chrX 95187937 95187986 -81786154 + AT_rich Low_complexity Low_complexity 1 49 0 2169 119 23 0 chrX 95188471 95188774 -81785366 + AluSg SINE Alu 1 310 0 2726 107 112 7 chrX 95188859 95189288 -81784852 - MER101 LTR ERV1 0 474 1 483 234 0 9 chrX 95189534 95189641 -81784499 + L1M4 LINE L1 4847 4952 -1194 1152 240 45 13 chrX 95189656 95189964 -81784176 + MER110A LTR ERV1 151 468 0 396 0 0 0 chrX 95189999 95190043 -81784097 + (CA)n Simple_repeat Simple_repeat 2 45 0 1989 108 90 0 chrX 95190592 95190871 -81783269 - AluSx SINE Alu -8 304 1 1920 137 7 0 chrX 95191505 95191814 -81782326 + AluSx SINE Alu 3 313 0 218 271 17 0 chrX 95192290 95192349 -81781791 + CT-rich Low_complexity Low_complexity 4 63 0 367 291 107 19 chrX 95192694 95192900 -81781240 - L2 LINE L2 -179 3093 2870 279 190 70 80 chrX 95192929 95193029 -81781111 + L2 LINE L2 3166 3264 -8 245 266 181 0 chrX 95193040 95193134 -81781006 + MIR SINE MIR 20 130 -78 336 258 161 85 chrX 95193237 95193667 -81780473 - L1M2 LINE L1 -5453 1396 650 232 319 19 9 chrX 95194005 95194171 -81779969 + CT-rich Low_complexity Low_complexity 1 215 0 21 0 0 0 chrX 95195782 95195803 -81778337 + AT_rich Low_complexity Low_complexity 1 21 0 2176 131 0 0 chrX 95196473 95196771 -81777369 - AluSx SINE Alu -14 298 1 26 0 0 0 chrX 95198161 95198187 -81775953 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chrX 95198436 95198464 -81775676 + AT_rich Low_complexity Low_complexity 1 28 0 267 294 65 0 chrX 95198481 95198573 -81775567 - L1ME4a LINE L1 -73 6048 5951 681 263 84 37 chrX 95198650 95198947 -81775193 - L1ME4a LINE L1 -292 5829 5519 1657 181 0 55 chrX 95199024 95199350 -81774790 + AluJb SINE Alu 2 309 -3 370 235 0 0 chrX 95199711 95199779 -81774361 + L2 LINE L2 3205 3272 0 1052 222 9 9 chrX 95199877 95200098 -81774042 - AluJo SINE Alu -15 297 77 21 57 0 0 chrX 95200242 95200277 -81773863 + AT_rich Low_complexity Low_complexity 1 35 0 1238 179 24 0 chrX 95200901 95201113 -81773027 + AluJo SINE Alu 6 222 -90 655 178 0 9 chrX 95201118 95201225 -81772915 + AluJb SINE Alu 190 295 -17 1291 231 88 17 chrX 95201226 95201684 -81772456 + L1ME4a LINE L1 5445 5908 -213 480 259 284 0 chrX 95201923 95202124 -81772016 - MIR SINE MIR 0 262 5 863 207 42 42 chrX 95202178 95202415 -81771725 - L1MC5 LINE L1 -37 7924 7688 418 280 10 23 chrX 95203649 95203826 -81770314 - L1MC4a LINE L1 -377 5777 5653 5759 177 33 33 chrX 95203881 95205053 -81769087 - L1MB7 LINE L1 -20 6164 4993 2109 104 0 13 chrX 95205053 95205351 -81768789 - AluSq SINE Alu 0 313 20 837 200 0 0 chrX 95205353 95205483 -81768657 - FLAM_A SINE Alu -3 130 1 5759 177 33 33 chrX 95205483 95205762 -81768378 - L1MB7 LINE L1 -1192 4992 4714 1589 171 0 8 chrX 95205762 95206020 -81768120 + AluJb SINE Alu 14 269 -43 5759 177 33 33 chrX 95206020 95206646 -81767494 - L1MB7 LINE L1 -1470 4714 4048 777 209 11 21 chrX 95206638 95206825 -81767315 - L1MB7 LINE L1 -2369 3777 3593 * 1915 154 0 10 chrX 95206873 95207184 -81766956 - AluJo SINE Alu -4 308 1 189 0 0 0 chrX 95207192 95207213 -81766927 + (T)n Simple_repeat Simple_repeat 1 21 0 244 195 0 126 chrX 95208269 95208356 -81765784 + L2 LINE L2 2250 2325 -989 356 264 189 20 chrX 95208596 95208744 -81765396 + MIR3 SINE MIR 25 197 -11 2326 109 0 3 chrX 95208879 95209190 -81764950 - AluSg SINE Alu 0 310 1 529 269 144 1 chrX 95209724 95209911 -81764229 - MIR SINE MIR -14 248 38 2310 102 13 0 chrX 95210364 95210668 -81763472 - AluSx SINE Alu -4 308 1 26 0 0 0 chrX 95211369 95211395 -81762745 + AT_rich Low_complexity Low_complexity 1 26 0 324 194 107 78 chrX 95211402 95211505 -81762635 + L1MA10 LINE L1 6184 6289 -45 1323 187 60 42 chrX 95211680 95211963 -81762177 - AluJb SINE Alu -8 304 17 971 118 0 15 chrX 95211975 95212110 -81762030 - FLAM_C SINE Alu 0 133 1 2193 91 27 10 chrX 95212510 95212808 -81761332 - AluSx SINE Alu -9 303 1 2149 98 42 0 chrX 95213999 95214285 -81759855 - AluSg SINE Alu -12 298 1 739 231 16 5 chrX 95216802 95216988 -81757152 + MER5A DNA MER1_type 1 188 -1 25 51 0 0 chrX 95220944 95220983 -81753157 + AT_rich Low_complexity Low_complexity 1 39 0 239 204 0 37 chrX 95222829 95222883 -81751257 - Charlie5 DNA MER1_type -2559 53 2 963 188 29 29 chrX 95222886 95223094 -81751046 - MER3 DNA MER1_type -1 208 1 1785 174 3 33 chrX 95223222 95223527 -81750613 - AluJo SINE Alu -16 296 1 2143 98 3 44 chrX 95223867 95224184 -81749956 - AluSx SINE Alu -8 304 1 1975 128 10 0 chrX 95224500 95224789 -81749351 + AluSx SINE Alu 1 292 -20 413 218 60 81 chrX 95224804 95224997 -81749143 - L1MC5 LINE L1 -68 7893 7704 1678 163 17 33 chrX 95224997 95225297 -81748843 - AluJb SINE Alu -17 295 1 413 218 60 81 chrX 95225297 95225337 -81748803 - L1MC5 LINE L1 -257 7704 7665 28 61 0 0 chrX 95225339 95225388 -81748752 + AT_rich Low_complexity Low_complexity 1 49 0 349 244 62 145 chrX 95225964 95226011 -81748129 - MIR3 SINE MIR -9 199 150 889 174 56 11 chrX 95226011 95226189 -81747951 - MER5A DNA MER1_type -3 186 1 349 244 62 145 chrX 95226189 95226334 -81747806 - MIR3 SINE MIR -58 150 23 543 256 84 53 chrX 95226578 95226899 -81747241 - MARNA DNA Mariner -238 348 18 554 297 16 0 chrX 95227033 95227161 -81746979 - MIR3 SINE MIR -39 169 40 781 212 42 62 chrX 95227270 95227397 -81746743 + MER5A DNA MER1_type 1 124 -65 1871 161 3 0 chrX 95227397 95227696 -81746444 - AluJb SINE Alu -12 300 1 781 212 42 62 chrX 95227696 95227761 -81746379 + MER5A DNA MER1_type 124 189 0 331 191 16 175 chrX 95227777 95227829 -81746311 + MER5B DNA MER1_type 14 36 -142 2284 109 0 3 chrX 95227829 95228133 -81746007 + AluSq SINE Alu 1 303 -10 331 191 16 175 chrX 95228133 95228206 -81745934 + MER5B DNA MER1_type 36 119 -59 2373 173 174 114 chrX 95228212 95228517 -81745623 - L1MD3 LINE L1 -1 7994 7709 2375 112 0 6 chrX 95228517 95228831 -81745309 - AluSx SINE Alu 0 312 1 2373 173 174 114 chrX 95228831 95229095 -81745045 - L1MD3 LINE L1 -286 7709 7462 432 153 46 15 chrX 95229095 95229188 -81744952 - MLT1F1 LTR MaLR -445 122 35 2373 173 174 114 chrX 95229188 95229244 -81744896 - L1MD3 LINE L1 -533 7462 7411 2305 99 0 13 chrX 95229244 95229556 -81744584 - AluSx SINE Alu -4 308 1 2373 173 174 114 chrX 95229556 95229801 -81744339 - L1MD3 LINE L1 -584 7411 6761 1708 184 7 3 chrX 95229815 95230108 -81744032 - AluJo SINE Alu -18 294 1 250 200 280 10 chrX 95230359 95230459 -81743681 + MER5A DNA MER1_type 45 171 -18 * 518 198 15 8 chrX 95230381 95230489 -81743651 - MER5A DNA MER1_type -77 112 4 1381 214 136 29 chrX 95230617 95231127 -81743013 + MLT1F1 LTR MaLR 1 567 0 444 248 80 18 chrX 95231211 95231324 -81742816 - L2 LINE L2 -1 3312 3193 2503 89 0 0 chrX 95231325 95231638 -81742502 - AluSq SINE Alu 0 313 1 2141 137 0 9 chrX 95232717 95233032 -81741108 + AluSx SINE Alu 1 312 0 2254 92 0 0 chrX 95233084 95233392 -81740748 + AluSx SINE Alu 1 308 0 1195 142 4 91 chrX 95233394 95233705 -81740435 - MER66-int LTR ERV1 -2255 4421 3497 303 240 52 0 chrX 95233724 95233820 -81740320 - MER66-int LTR ERV1 -2495 4181 4081 535 196 25 127 chrX 95233846 95234135 -81740005 - MER66A LTR ERV1 -139 339 108 1417 228 90 27 chrX 95234185 95234663 -81739477 + L1ME3A LINE L1 5654 6161 -9 39 50 0 0 chrX 95234736 95234796 -81739344 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chrX 95234968 95234996 -81739144 + AT_rich Low_complexity Low_complexity 1 28 0 1382 296 59 12 chrX 95235070 95235965 -81738175 + L1M4 LINE L1 2230 3166 -2980 928 123 74 49 chrX 95235992 95236155 -81737985 - AluSg/x SINE Alu -9 301 135 605 243 7 0 chrX 95236155 95236291 -81737849 + L2 LINE L2 2462 2598 -716 589 305 19 74 chrX 95236301 95236665 -81737475 - LTR16B LTR ERVL -120 344 1 1105 182 72 5 chrX 95236714 95236923 -81737217 + MER58A DNA MER1_type 1 223 -1 1381 261 319 20 chrX 95237064 95237862 -81736278 - L2 LINE L2 -569 2745 1709 438 69 0 0 chrX 95238472 95238530 -81735610 + (TG)n Simple_repeat Simple_repeat 2 59 0 789 211 20 0 chrX 95239117 95239264 -81734876 + FRAM SINE Alu 1 150 -16 260 120 27 27 chrX 95239267 95239342 -81734798 + (TA)n Simple_repeat Simple_repeat 2 76 0 496 272 29 22 chrX 95239355 95239491 -81734649 - MIR SINE MIR -95 167 31 609 291 67 11 chrX 95239520 95239699 -81734441 - MIR SINE MIR -57 205 17 350 241 56 28 chrX 95239915 95240023 -81734117 + MIR SINE MIR 76 186 -76 2234 111 0 9 chrX 95240281 95240596 -81733544 - AluSx SINE Alu 0 312 1 445 268 153 82 chrX 95240893 95241247 -81732893 - L2 LINE L2 0 3313 2935 206 339 0 0 chrX 95241232 95241294 -81732846 + L2 LINE L2 3209 3270 -2 * 2275 115 0 0 chrX 95241618 95241922 -81732218 + AluSq SINE Alu 1 304 -9 1277 146 60 9 chrX 95241922 95242320 -81731820 + L1ME LINE L1 5110 5924 -242 479 114 13 0 chrX 95242320 95242397 -81731743 + L1PA16 LINE L1 6071 6150 -16 4701 118 13 47 chrX 95242398 95242457 -81731683 + L1MA5 LINE L1 5469 5528 -772 2253 110 3 0 chrX 95242457 95242757 -81731383 - AluSx SINE Alu -11 301 1 4701 118 13 47 chrX 95242757 95243555 -81730585 + L1MA5 LINE L1 5528 6297 -3 395 107 13 0 chrX 95243567 95243642 -81730498 + (GA)n Simple_repeat Simple_repeat 1 76 0 600 198 12 99 chrX 95243642 95243677 -81730463 + MER5B DNA MER1_type 31 67 -111 1947 126 11 18 chrX 95243677 95243984 -81730156 + AluSx SINE Alu 1 305 0 600 198 12 99 chrX 95243984 95244109 -81730031 + MER5B DNA MER1_type 67 178 0 1499 165 41 0 chrX 95244511 95244754 -81729386 - AluJo SINE Alu -59 253 1 713 219 20 0 chrX 95244761 95244907 -81729233 - MIR SINE MIR -70 192 44 841 171 40 126 chrX 95244920 95245270 -81728870 + MER33 DNA MER1_type 1 320 -4 504 346 33 49 chrX 95245570 95245937 -81728203 - L2 LINE L2 -459 2855 2495 2111 105 0 23 chrX 95246045 95246350 -81727790 - AluSq SINE Alu -15 298 1 195 129 0 0 chrX 95246423 95246454 -81727686 + (GGAA)n Simple_repeat Simple_repeat 4 34 0 249 242 74 11 chrX 95246466 95246561 -81727579 + MIR3 SINE MIR 82 182 -26 2744 137 31 2 chrX 95247181 95247633 -81726507 - MER101 LTR ERV1 0 474 10 403 275 20 75 chrX 95248077 95248277 -81725863 + MER5A DNA MER1_type 1 189 0 556 229 50 50 chrX 95248562 95248802 -81725338 - L1M4 LINE L1 -2079 4067 3828 1572 164 26 55 chrX 95250174 95250484 -81723656 - AluJb SINE Alu -11 301 1 22 0 0 0 chrX 95250484 95250506 -81723634 + AT_rich Low_complexity Low_complexity 1 22 0 3918 174 30 19 chrX 95250689 95251529 -81722611 + L1MB7 LINE L1 5320 6168 -16 207 100 0 0 chrX 95251532 95251562 -81722578 + (CATA)n Simple_repeat Simple_repeat 3 32 0 751 266 28 14 chrX 95251563 95251781 -81722359 - MLT1H LTR MaLR -328 221 1 1906 148 10 7 chrX 95252065 95252368 -81721772 - AluJb SINE Alu -8 304 1 246 32 0 0 chrX 95252478 95252509 -81721631 + (TC)n Simple_repeat Simple_repeat 2 32 0 465 183 0 21 chrX 95252509 95252651 -81721489 + (TA)n Simple_repeat Simple_repeat 1 139 0 207 100 0 0 chrX 95252684 95252714 -81721426 + (TA)n Simple_repeat Simple_repeat 1 30 0 198 0 0 0 chrX 95252764 95252786 -81721354 + (TGAG)n Simple_repeat Simple_repeat 2 23 0 867 187 0 0 chrX 95252787 95252926 -81721214 - FRAM SINE Alu -37 139 1 28 61 0 0 chrX 95253139 95253188 -81720952 + AT_rich Low_complexity Low_complexity 1 49 0 280 243 0 0 chrX 95253188 95253258 -81720882 - L1ME LINE L1 -424 5697 5628 808 123 0 0 chrX 95253258 95253364 -81720776 + AluJb SINE Alu 1 106 -206 2097 137 0 0 chrX 95253599 95253910 -81720230 + AluSx SINE Alu 1 311 0 853 160 8 0 chrX 95254005 95254130 -81720010 - FLAM_C SINE Alu -17 126 1 698 285 49 23 chrX 95254130 95254192 -81719948 + L1ME4a LINE L1 5628 5687 -434 425 163 0 0 chrX 95254192 95254272 -81719868 + MER116 DNA Mariner 1 80 0 698 285 49 23 chrX 95254272 95254599 -81719541 + L1ME4a LINE L1 5687 6027 -94 2099 122 16 48 chrX 95254600 95254976 -81719164 + THE1B LTR MaLR 1 364 0 1816 162 0 11 chrX 95255010 95255336 -81718804 - AluJb SINE Alu 0 323 1 22 0 0 0 chrX 95255363 95255385 -81718755 + AT_rich Low_complexity Low_complexity 1 22 0 1016 188 32 5 chrX 95255449 95255635 -81718505 + AluJb SINE Alu 108 298 -14 295 338 86 62 chrX 95255822 95256195 -81717945 + L2 LINE L2 2865 3246 -26 692 278 57 20 chrX 95256219 95256464 -81717676 + L2 LINE L2 2808 3061 -211 804 201 159 65 chrX 95257082 95257132 -81717008 + MER102b DNA MER1_type 1 45 -1383 386 19 0 19 chrX 95257132 95257184 -81716956 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2102 95 3 11 chrX 95257186 95257470 -81716670 - AluSx SINE Alu -28 284 3 804 201 159 65 chrX 95257470 95257670 -81716470 + MER102b DNA MER1_type 45 290 -1138 2413 104 3 0 chrX 95257670 95257979 -81716161 - AluSx SINE Alu -2 310 1 804 201 159 65 chrX 95257979 95258033 -81716107 + MER102b DNA MER1_type 290 338 -3 2155 119 7 0 chrX 95258033 95258335 -81715805 - AluSq SINE Alu -6 307 4 180 0 0 0 chrX 95258373 95258393 -81715747 + (TGG)n Simple_repeat Simple_repeat 3 22 0 219 36 0 0 chrX 95258394 95258422 -81715718 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1791 161 4 4 chrX 95258429 95258709 -81715431 - AluJb SINE Alu -32 280 1 791 203 27 70 chrX 95258728 95259028 -81715112 - L1MC5 LINE L1 -51 7910 7624 265 332 90 39 chrX 95259215 95259421 -81714719 - MIR3 SINE MIR -41 221 9 394 203 281 26 chrX 95259463 95259476 -81714664 + MIR SINE MIR 1 9 -253 352 284 103 37 chrX 95259476 95259719 -81714421 - MIR SINE MIR -1 261 3 394 203 281 26 chrX 95259719 95259858 -81714282 + MIR SINE MIR 9 192 -70 822 61 0 0 chrX 95259868 95259967 -81714173 + AluS SINE Alu 1 99 -213 315 109 164 0 chrX 95259967 95260022 -81714118 - AluJ/FLAM SINE Alu -238 64 1 1463 144 58 21 chrX 95260022 95260265 -81713875 + AluSx SINE Alu 30 281 -31 976 16 0 16 chrX 95260268 95260392 -81713748 + (GAAA)n Simple_repeat Simple_repeat 2 123 0 282 237 0 0 chrX 95260397 95260456 -81713684 + MIR SINE MIR 199 257 -5 1939 147 14 0 chrX 95261131 95261423 -81712717 - AluJo SINE Alu -16 296 1 312 179 45 0 chrX 95261520 95261587 -81712553 - MLT1D LTR MaLR -1 504 435 1438 201 15 4 chrX 95261599 95261873 -81712267 + AluJo SINE Alu 3 279 -33 630 178 142 67 chrX 95261890 95262115 -81712025 - MLT1D LTR MaLR -125 380 139 894 188 0 57 chrX 95262194 95262370 -81711770 - AluJo SINE Alu 0 302 137 450 160 0 147 chrX 95262370 95262520 -81711620 - MLT1D LTR MaLR -498 128 1 330 328 93 40 chrX 95262712 95263045 -81711095 + L1 LINE L1 4636 4976 -1170 1145 106 19 6 chrX 95263219 95263380 -81710760 + AluSq SINE Alu 1 163 -150 201 119 48 0 chrX 95263380 95263422 -81710718 + A-rich Low_complexity Low_complexity 3 46 0 2176 110 0 10 chrX 95263542 95263845 -81710295 + AluSx SINE Alu 1 298 -14 181 0 0 0 chrX 95263845 95263865 -81710275 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 485 183 0 21 chrX 95264109 95264202 -81709938 - AluJo SINE Alu -169 143 53 2217 105 3 3 chrX 95264203 95264497 -81709643 + AluSx SINE Alu 1 294 -18 418 264 25 8 chrX 95264587 95264708 -81709432 - MIR SINE MIR -79 183 61 1750 92 131 8 chrX 95264740 95265000 -81709140 - AluSg1 SINE Alu -17 292 1 296 259 62 0 chrX 95265039 95265120 -81709020 + L1ME LINE L1 5578 5663 -458 183 162 0 0 chrX 95265148 95265185 -81708955 + (TA)n Simple_repeat Simple_repeat 1 37 0 1507 186 41 17 chrX 95265320 95265610 -81708530 + AluJo SINE Alu 1 297 -15 404 106 0 30 chrX 95266795 95266881 -81707259 + L1PA10 LINE L1 6089 6168 0 225 256 0 0 chrX 95266889 95266932 -81707208 + (TG)n Simple_repeat Simple_repeat 1 43 0 1349 179 0 0 chrX 95267406 95267630 -81706510 - AluJb SINE Alu -4 308 85 700 180 0 50 chrX 95267673 95267812 -81706328 + FLAM_A SINE Alu 1 132 -1 2189 117 20 0 chrX 95267812 95268110 -81706030 + AluJb SINE Alu 1 304 -8 234 205 0 0 chrX 95268374 95268413 -81705727 + Alu SINE Alu 131 169 -133 1996 153 0 0 chrX 95268487 95268788 -81705352 + AluJb SINE Alu 2 302 -10 397 306 6 2 chrX 95269286 95269459 -81704681 + MIR SINE MIR 47 260 -2 234 325 0 12 chrX 95269679 95269762 -81704378 + GA-rich Low_complexity Low_complexity 2 83 0 360 303 17 17 chrX 95272226 95272345 -81701795 + MIR3 SINE MIR 66 184 -24 1400 186 87 25 chrX 95272865 95273140 -81701000 - AluJo SINE Alu -20 292 1 803 207 61 6 chrX 95273953 95274070 -81700070 + AluJo SINE Alu 1 131 -181 209 57 29 0 chrX 95274070 95274105 -81700035 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 803 207 61 6 chrX 95274105 95274151 -81699989 + AluJo SINE Alu 131 173 -139 185 0 0 39 chrX 95274257 95274283 -81699857 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1806 182 0 7 chrX 95274286 95274594 -81699546 - AluJb SINE Alu -6 306 1 2191 95 0 7 chrX 95275214 95275510 -81698630 + AluSq SINE Alu 1 294 -19 1890 129 24 17 chrX 95276208 95276503 -81697637 + AluJo SINE Alu 1 297 -15 23 0 0 0 chrX 95279138 95279161 -81694979 + AT_rich Low_complexity Low_complexity 1 23 0 220 183 0 56 chrX 95279332 95279403 -81694737 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1850 92 48 0 chrX 95279805 95280056 -81694084 + AluSx SINE Alu 30 292 -20 249 242 0 0 chrX 95280057 95280119 -81694021 + LTR66 LTR ERVL 412 473 -137 893 155 22 33 chrX 95280695 95280876 -81693264 + MER96B DNA MER1_type? 1 179 -238 200 255 0 0 chrX 95282196 95282243 -81691897 + (CGGG)n Simple_repeat Simple_repeat 2 48 0 949 117 21 14 chrX 95283129 95283274 -81690866 + AluJb SINE Alu 158 303 -9 2488 21 43 0 chrX 95283369 95283651 -81690489 - AluY SINE Alu -17 294 1 1110 130 146 61 chrX 95284126 95284295 -81689845 + ORSL DNA AcHobo 1 199 -76 1365 185 44 27 chrX 95284295 95284593 -81689547 - AluJo SINE Alu -9 303 1 1110 130 146 61 chrX 95284593 95284670 -81689470 + ORSL DNA AcHobo 199 268 -7 385 260 16 39 chrX 95284944 95285071 -81689069 + MER113 DNA MER1_type? 1 124 -397 669 251 75 10 chrX 95285155 95285354 -81688786 + MIR SINE MIR 3 214 -48 549 242 91 15 chrX 95285362 95285560 -81688580 - MIR SINE MIR -2 260 48 3875 192 17 9 chrX 95285628 95286369 -81687771 - L1MB7 LINE L1 -59 6125 5376 2339 88 27 0 chrX 95286369 95286663 -81687477 - AluSq SINE Alu -11 302 1 3875 192 17 9 chrX 95286663 95286683 -81687457 - L1MB7 LINE L1 -808 5376 5358 2400 90 0 3 chrX 95286927 95287228 -81686912 - AluSg SINE Alu -10 300 1 2074 137 3 3 chrX 95287612 95287912 -81686228 - AluSq SINE Alu -13 300 1 1891 147 0 26 chrX 95288075 95288381 -81685759 - AluJo SINE Alu -14 298 1 475 91 0 0 chrX 95289737 95289803 -81684337 - MER41B LTR ERV1 -88 547 482 1719 152 0 55 chrX 95289967 95290276 -81683864 - AluJo SINE Alu -20 292 1 25 0 0 0 chrX 95290276 95290301 -81683839 + AT_rich Low_complexity Low_complexity 1 25 0 233 302 10 0 chrX 95290308 95290404 -81683736 - L1ME4a LINE L1 -1 6120 6024 2441 88 0 0 chrX 95290545 95290839 -81683301 + AluSx SINE Alu 1 294 -18 229 175 0 0 chrX 95290862 95290902 -81683238 - Alu SINE Alu -55 78 39 2054 128 3 0 chrX 95291363 95291646 -81682494 + AluSx SINE Alu 1 287 -25 357 102 0 0 chrX 95291646 95291705 -81682435 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1135 130 34 0 chrX 95291730 95291907 -81682233 + MER20 DNA MER1_type 35 217 -2 482 229 24 59 chrX 95291909 95292079 -81682061 + L1MD3 LINE L1 7822 7985 -10 198 0 0 0 chrX 95292098 95292120 -81682020 + (CTA)n Simple_repeat Simple_repeat 1 22 0 2020 127 0 3 chrX 95292190 95292473 -81681667 + AluSx SINE Alu 3 284 -28 25 0 0 0 chrX 95292473 95292498 -81681642 + AT_rich Low_complexity Low_complexity 1 25 0 653 110 43 0 chrX 95292505 95292668 -81681472 + (TA)n Simple_repeat Simple_repeat 2 171 0 1121 107 0 19 chrX 95292739 95292898 -81681242 - AluSg/x SINE Alu -31 279 124 309 51 0 0 chrX 95292922 95292961 -81681179 + (TG)n Simple_repeat Simple_repeat 2 40 0 3089 169 95 33 chrX 95292961 95293687 -81680453 - L1MD2 LINE L1 -226 6133 5359 2011 121 0 39 chrX 95293687 95293994 -81680146 - AluSx SINE Alu -17 295 1 809 256 60 47 chrX 95294022 95294408 -81679732 - L2 LINE L2 -664 2650 2260 1575 189 6 19 chrX 95294506 95294819 -81679321 + AluJb SINE Alu 1 309 -3 1464 183 28 12 chrX 95295338 95295590 -81678550 - AluJb SINE Alu -56 256 1 974 138 0 0 chrX 95295620 95295758 -81678382 + AluSq/x SINE Alu 1 138 -174 2042 132 0 0 chrX 95296258 95296564 -81677576 + AluSx SINE Alu 1 306 0 1896 140 18 0 chrX 95296836 95297164 -81676976 + L1MA4 LINE L1 5966 6299 -1 27 29 0 0 chrX 95298294 95298328 -81675812 + AT_rich Low_complexity Low_complexity 1 34 0 2900 187 21 18 chrX 95298415 95299036 -81675104 - L1MC3 LINE L1 -5 8037 7426 901 147 0 27 chrX 95299605 95299779 -81674361 - AluJo/FRAM SINE Alu 0 306 137 1373 104 158 138 chrX 95299779 95300077 -81674063 - AluSg SINE Alu -6 304 1 1799 154 24 17 chrX 95300155 95300447 -81673693 - AluJo SINE Alu -18 294 1 1044 222 44 52 chrX 95300590 95300950 -81673190 + MLT2C1 LTR ERVL 1 426 -38 750 154 14 42 chrX 95301038 95301181 -81672959 + AluJo SINE Alu 7 145 -167 2349 95 0 0 chrX 95301181 95301477 -81672663 + AluSx SINE Alu 1 296 -16 470 332 23 0 chrX 95301521 95301780 -81672360 - L1ME3A LINE L1 -284 5886 5622 1397 208 35 28 chrX 95301899 95302188 -81671952 - MLT1D LTR MaLR 0 505 215 189 0 0 0 chrX 95302195 95302216 -81671924 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 32 26 0 0 chrX 95302760 95302799 -81671341 + AT_rich Low_complexity Low_complexity 1 39 0 198 259 37 0 chrX 95302800 95302854 -81671286 - L2 LINE L2 -1 3312 3257 263 277 85 28 chrX 95303016 95303157 -81670983 + L2 LINE L2 2492 2640 -674 * 316 272 97 10 chrX 95303153 95303256 -81670884 + L2 LINE L2 3186 3297 -16 1987 126 0 17 chrX 95303269 95303563 -81670577 - AluJb SINE Alu -23 289 1 1637 174 0 65 chrX 95303577 95303916 -81670224 - AluJb SINE Alu 0 319 1 504 300 100 30 chrX 95304153 95304565 -81669575 - L2 LINE L2 -85 3228 2749 467 286 106 13 chrX 95304573 95304832 -81669308 + L2 LINE L2 2753 3035 -278 1850 149 7 7 chrX 95304836 95305124 -81669016 + AluJo SINE Alu 1 288 -24 1333 219 61 49 chrX 95305140 95305550 -81668590 - MLT1C LTR MaLR 0 467 53 711 235 16 27 chrX 95305635 95305822 -81668318 + L2 LINE L2 3124 3308 -5 2249 106 7 0 chrX 95306629 95306932 -81667208 - AluSq SINE Alu -6 307 3 1639 200 3 3 chrX 95307014 95307319 -81666821 + AluJo SINE Alu 1 305 -7 1746 176 13 19 chrX 95307803 95308116 -81666024 - AluJo SINE Alu -1 311 1 1984 139 20 0 chrX 95308134 95308435 -81665705 - AluJb SINE Alu -1 311 5 523 295 76 0 chrX 95309636 95309846 -81664294 - MIR SINE MIR -35 227 2 2399 106 0 0 chrX 95310028 95310330 -81663810 + AluSx SINE Alu 1 302 -10 321 228 0 0 chrX 95310570 95310649 -81663491 - MIR SINE MIR 0 262 184 721 181 19 31 chrX 95310649 95310809 -81663331 - FRAM SINE Alu 0 40 1 186 263 71 126 chrX 95310836 95310914 -81663226 + L2 LINE L2 2461 2542 -772 2473 90 3 0 chrX 95310914 95311225 -81662915 - AluSq SINE Alu -1 312 1 186 263 71 126 chrX 95311225 95311401 -81662739 + L2 LINE L2 2542 2701 -613 1550 171 7 43 chrX 95313120 95313419 -81660721 + AluJb SINE Alu 1 288 -24 181 278 170 88 chrX 95313462 95313656 -81660484 - L2 LINE L2 -195 3077 2868 562 176 10 0 chrX 95313662 95313764 -81660376 + MER58B DNA MER1_type 168 270 -71 437 125 34 68 chrX 95313774 95313862 -81660278 + MER58B DNA MER1_type 248 332 -9 1322 123 0 0 chrX 95313862 95314049 -81660091 + AluSg/x SINE Alu 123 309 -1 640 272 123 24 chrX 95314366 95315108 -81659032 - L1ME LINE L1 -367 5754 4939 3971 163 113 20 chrX 95315221 95316011 -81658129 + MER21B LTR ERV1 1 863 0 5319 196 75 44 chrX 95316018 95317117 -81657023 + MER21B-int LTR ERV1 2 1138 -3053 2389 71 10 0 chrX 95317117 95317412 -81656728 - AluSx SINE Alu -14 298 1 5319 196 75 44 chrX 95317412 95317562 -81656578 + MER21B-int LTR ERV1 1138 1282 -2909 1581 134 4 4 chrX 95317563 95317795 -81656345 + AluJb SINE Alu 1 232 -80 10140 160 75 27 chrX 95317833 95318735 -81655405 + MER21B-int LTR ERV1 2160 3018 -1173 2186 107 30 0 chrX 95318735 95318858 -81655282 + AluSp SINE Alu 1 119 -194 257 67 0 22 chrX 95318858 95318903 -81655237 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2186 107 30 0 chrX 95318903 95319078 -81655062 + AluSp SINE Alu 119 308 -5 10140 160 75 27 chrX 95319078 95320065 -81654075 + MER21B-int LTR ERV1 3018 4139 -52 918 205 30 0 chrX 95320145 95320311 -81653829 + MER21B LTR ERV1 1 171 -692 2067 122 0 0 chrX 95320734 95321012 -81653128 - AluSx SINE Alu -19 293 16 448 314 20 0 chrX 95321014 95321167 -81652973 - MIR SINE MIR -35 227 72 259 263 42 21 chrX 95321584 95321679 -81652461 + L1MC/D LINE L1 5679 5775 -389 1716 85 18 9 chrX 95321723 95321947 -81652193 - AluSg/x SINE Alu -2 308 83 2265 112 0 0 chrX 95322075 95322371 -81651769 + AluSx SINE Alu 1 296 -16 1698 188 197 36 chrX 95323186 95323289 -81650851 + MLT1F1 LTR MaLR 1 86 -481 2167 144 0 0 chrX 95323289 95323595 -81650545 - AluSx SINE Alu -6 306 1 1698 188 197 36 chrX 95323595 95323964 -81650176 + MLT1F1 LTR MaLR 86 549 -18 270 0 0 0 chrX 95325266 95325296 -81648844 + (T)n Simple_repeat Simple_repeat 1 30 0 810 286 114 52 chrX 95325757 95326177 -81647963 + MLT1J2 LTR MaLR 1 450 0 510 252 0 35 chrX 95326331 95326474 -81647666 - L2 LINE L2 0 3313 3176 233 275 53 61 chrX 95326523 95326654 -81647486 + MER5A DNA MER1_type 2 131 -58 248 281 88 66 chrX 95326668 95326896 -81647244 - L2 LINE L2 -780 2534 2302 199 250 0 0 chrX 95326983 95327023 -81647117 - L2 LINE L2 -85 3187 3148 22 0 0 0 chrX 95327128 95327150 -81646990 + AT_rich Low_complexity Low_complexity 1 22 0 404 311 99 18 chrX 95327991 95328213 -81645927 - MIR SINE MIR -6 256 17 2156 80 0 0 chrX 95328526 95328790 -81645350 - AluSg1 SINE Alu -18 291 28 189 147 0 0 chrX 95328896 95328930 -81645210 + (TG)n Simple_repeat Simple_repeat 1 34 0 523 301 56 26 chrX 95329829 95330098 -81644042 + L2 LINE L2 2554 2830 -484 2264 99 0 3 chrX 95330117 95330443 -81643697 - AluSx SINE Alu 0 325 1 180 292 0 0 chrX 95331003 95331051 -81643089 - MIR SINE MIR -110 152 105 2331 122 0 0 chrX 95331116 95331428 -81642712 - AluSx SINE Alu 0 312 1 1135 154 0 6 chrX 95331428 95331603 -81642537 - AluJb SINE Alu -4 308 135 321 82 0 0 chrX 95331917 95331966 -81642174 + (GA)n Simple_repeat Simple_repeat 2 50 0 804 239 0 0 chrX 95332622 95332810 -81641330 + MER5A DNA MER1_type 2 189 0 472 299 115 9 chrX 95333073 95333290 -81640850 + MIR SINE MIR 3 242 -20 186 250 0 0 chrX 95333478 95333526 -81640614 + MIR SINE MIR 5 52 -210 2211 110 0 0 chrX 95333534 95333825 -81640315 - AluSx SINE Alu -21 291 1 655 228 90 0 chrX 95333854 95334021 -81640119 + MIR SINE MIR 50 231 -31 500 280 19 13 chrX 95334717 95334874 -81639266 + MIR3 SINE MIR 30 187 -21 248 200 55 0 chrX 95334886 95334941 -81639199 - MIR SINE MIR -2 260 203 1186 148 42 25 chrX 95334944 95335181 -81638959 + Tigger2a DNA MER2_type 2 242 -192 413 0 39 0 chrX 95335181 95335233 -81638907 + (TTTC)n Simple_repeat Simple_repeat 1 54 0 1328 120 29 45 chrX 95335233 95335250 -81638890 + Tigger2a DNA MER2_type 196 212 -2506 1850 148 16 23 chrX 95335250 95335554 -81638586 - AluJo SINE Alu -10 302 1 1328 120 29 45 chrX 95335554 95335614 -81638526 + Tigger2a DNA MER2_type 212 271 -2447 2196 126 0 0 chrX 95335614 95335916 -81638224 + AluSx SINE Alu 1 302 -10 1328 120 29 45 chrX 95335916 95336079 -81638061 + Tigger2a DNA MER2_type 271 433 -11 238 236 18 0 chrX 95336676 95336731 -81637409 - MIR SINE MIR -192 70 15 678 300 29 12 chrX 95336780 95337023 -81637117 + MIR SINE MIR 3 249 -13 236 191 0 0 chrX 95337416 95337463 -81636677 + (TG)n Simple_repeat Simple_repeat 1 47 0 414 57 0 0 chrX 95337740 95337793 -81636347 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 189 0 0 0 chrX 95338069 95338090 -81636050 + (T)n Simple_repeat Simple_repeat 1 21 0 2299 122 0 0 chrX 95338421 95338782 -81635358 - AluSx SINE Alu 0 361 1 1395 116 10 24 chrX 95338796 95339003 -81635137 - AluSg/x SINE Alu -12 298 95 1592 115 0 0 chrX 95339006 95339215 -81634925 - AluSx SINE Alu -103 209 1 747 220 59 5 chrX 95339370 95339556 -81634584 - MIR SINE MIR 0 262 67 617 163 81 81 chrX 95339912 95340084 -81634056 + MLT1B LTR MaLR 1 172 -218 269 265 13 19 chrX 95340104 95340264 -81633876 + CT-rich Low_complexity Low_complexity 1 159 0 644 204 7 42 chrX 95340273 95340415 -81633725 + MLT1B LTR MaLR 192 328 -62 1354 146 5 5 chrX 95340421 95340626 -81633514 - AluJo SINE Alu -107 205 1 1241 187 44 40 chrX 95340629 95340762 -81633378 - AluJb SINE Alu -38 274 143 1897 95 125 0 chrX 95340762 95341026 -81633114 - AluSx SINE Alu -15 297 1 1241 187 44 40 chrX 95341026 95341165 -81632975 - AluJb SINE Alu -169 143 1 2458 90 0 0 chrX 95341183 95341495 -81632645 - AluSx SINE Alu 0 312 1 1166 184 133 29 chrX 95341993 95342302 -81631838 - MER58B DNA MER1_type 0 341 1 559 220 151 13 chrX 95342318 95342477 -81631663 + MER5A DNA MER1_type 9 189 0 2288 110 0 22 chrX 95343022 95343340 -81630800 - AluSx SINE Alu -1 311 1 2247 123 0 0 chrX 95344140 95344449 -81629691 - AluSx SINE Alu -3 309 1 726 241 123 18 chrX 95344591 95344811 -81629329 - MIR SINE MIR 0 262 20 525 159 0 58 chrX 95344843 95344918 -81629222 - L1MA7 LINE L1 0 6291 6226 1889 145 122 18 chrX 95344918 95345304 -81628836 - MSTB LTR MaLR 0 426 1 525 159 0 58 chrX 95345304 95345366 -81628774 - L1MA7 LINE L1 -65 6226 6162 827 173 53 1 chrX 95345368 95345535 -81628605 - L1MA7 LINE L1 -151 6003 5875 866 244 15 48 chrX 95345563 95345833 -81628307 - MIR SINE MIR 0 262 2 486 247 130 7 chrX 95345917 95346071 -81628069 - Charlie8 DNA MER1_type -2192 225 53 1817 154 0 49 chrX 95346232 95346557 -81627583 + AluJo SINE Alu 4 312 0 264 242 106 15 chrX 95346864 95346930 -81627210 - Charlie8 DNA MER1_type -2345 72 1 257 279 0 0 chrX 95347263 95347324 -81626816 + MER5B DNA MER1_type 1 61 -117 448 212 23 45 chrX 95347358 95347490 -81626650 - MER5B DNA MER1_type -44 134 6 2253 122 0 10 chrX 95347666 95347978 -81626162 - AluSx SINE Alu -1 311 3 1746 234 92 55 chrX 95348064 95348629 -81625511 + MLT1E LTR MaLR 1 586 -7 512 269 16 21 chrX 95348675 95348861 -81625279 - MER5A DNA MER1_type -1 188 4 2192 98 14 0 chrX 95349035 95349320 -81624820 + AluSg SINE Alu 1 289 -21 206 81 27 0 chrX 95349320 95349357 -81624783 + (TA)n Simple_repeat Simple_repeat 2 39 0 1697 176 7 7 chrX 95349361 95349639 -81624501 - AluJo SINE Alu -30 282 5 361 177 16 0 chrX 95349927 95349989 -81624151 + MER5A DNA MER1_type 1 63 -126 2194 128 0 0 chrX 95350802 95351099 -81623041 - AluSg SINE Alu -13 297 1 368 250 62 0 chrX 95351445 95351573 -81622567 + L2 LINE L2 560 695 -2619 864 308 162 34 chrX 95351873 95352789 -81621351 + L2 LINE L2 644 1721 -1593 2042 131 3 22 chrX 95352789 95352971 -81621169 - AluSx SINE Alu 0 312 137 2309 107 3 0 chrX 95352971 95353269 -81620871 - AluSq SINE Alu -14 299 1 2042 131 3 22 chrX 95353269 95353400 -81620740 - AluSx SINE Alu -175 137 5 864 308 162 34 chrX 95353400 95353566 -81620574 + L2 LINE L2 1721 1864 -1450 403 272 18 26 chrX 95353651 95353765 -81620375 - MIR SINE MIR -126 136 24 219 228 0 35 chrX 95353893 95353950 -81620190 + L2 LINE L2 3258 3312 -1 190 304 0 14 chrX 95353966 95354035 -81620105 - L3b LINE CR1 -247 1336 1269 202 146 0 24 chrX 95354036 95354077 -81620063 - MIR3 SINE MIR -1 207 168 348 191 0 0 chrX 95354077 95354140 -81620000 - MIR SINE MIR -78 130 68 1636 178 31 67 chrX 95354822 95355210 -81618930 - MLT1A2 LTR MaLR 0 374 1 1856 143 52 0 chrX 95355241 95355527 -81618613 - AluSx SINE Alu -11 301 1 807 151 0 43 chrX 95355529 95355668 -81618472 - AluJo/FLAM SINE Alu -179 133 1 2010 153 0 3 chrX 95355711 95356018 -81618122 + AluJo SINE Alu 1 306 -6 27 49 0 0 chrX 95356176 95356217 -81617923 + AT_rich Low_complexity Low_complexity 1 41 0 826 333 50 28 chrX 95356398 95356761 -81617379 - MER115 DNA AcHobo -137 556 186 479 234 38 51 chrX 95356773 95356931 -81617209 + MIR SINE MIR 49 204 -58 234 333 9 38 chrX 95356932 95357037 -81617103 + MIR SINE MIR 46 147 -115 740 264 167 50 chrX 95357049 95357527 -81616613 - MLT1H LTR MaLR -15 534 1 180 385 52 0 chrX 95357531 95357627 -81616513 + MIR SINE MIR 150 250 -12 265 253 11 0 chrX 95357753 95357844 -81616296 + A-rich Low_complexity Low_complexity 3 94 0 693 204 0 0 chrX 95358236 95358378 -81615762 - Charlie1 DNA MER1_type 0 2761 2620 * 1183 215 12 24 chrX 95358358 95358604 -81615536 - Charlie1 DNA MER1_type -2518 243 1 298 178 78 33 chrX 95358687 95358777 -81615363 + MIR SINE MIR 120 213 -49 683 248 151 39 chrX 95359093 95359404 -81614736 - L2 LINE L2 -3 3310 2965 4327 279 155 27 chrX 95359413 95359837 -81614303 - L2 LINE L2 -534 2780 2412 2049 119 3 11 chrX 95359837 95360173 -81613967 + AluSx SINE Alu 1 334 0 4327 279 155 27 chrX 95360173 95362154 -81611986 - L2 LINE L2 -902 2412 66 438 266 111 20 chrX 95362521 95362720 -81611420 - L1MC4 LINE L1 -2 8040 7824 860 272 199 24 chrX 95362750 95363132 -81611008 - L3 LINE CR1 -471 1106 658 387 297 79 15 chrX 95363813 95364030 -81610110 + MIR SINE MIR 25 261 -1 1733 154 7 18 chrX 95364228 95364514 -81609626 + AluJb SINE Alu 1 283 -29 5314 204 116 48 chrX 95365044 95366310 -81607830 - L1MC4a LINE L1 -2 7806 6393 282 73 0 0 chrX 95366310 95366351 -81607789 + (TA)n Simple_repeat Simple_repeat 1 41 0 5314 204 116 48 chrX 95366351 95366787 -81607353 - L1MC4a LINE L1 -1415 6393 5988 620 242 38 0 chrX 95366814 95366971 -81607169 - L1MC4a LINE L1 -448 5794 5632 2296 116 3 0 chrX 95367045 95367356 -81606784 + AluSx SINE Alu 1 312 0 220 185 0 37 chrX 95368118 95368172 -81605968 + L2 LINE L2 3262 3313 0 1057 232 14 28 chrX 95368479 95368764 -81605376 - L2 LINE L2 -536 2778 2498 243 88 0 0 chrX 95370180 95370214 -81603926 + MARNA DNA Mariner 182 215 -371 883 152 119 0 chrX 95370214 95370325 -81603815 + AluJ SINE Alu 1 136 -176 243 0 0 0 chrX 95370325 95370352 -81603788 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 883 152 119 0 chrX 95370352 95370391 -81603749 + AluJ SINE Alu 136 169 -143 1184 187 162 78 chrX 95370391 95370894 -81603246 - MER66A LTR ERV1 0 478 97 852 133 74 0 chrX 95370894 95371029 -81603111 + AluJ SINE Alu 166 310 -2 970 299 54 68 chrX 95371140 95371904 -81602236 - L2 LINE L2 -1 3312 2309 438 352 132 15 chrX 95372025 95372352 -81601788 + L2 LINE L2 2260 2624 -690 * 645 296 25 114 chrX 95372350 95372718 -81601422 + L2 LINE L2 2938 3272 0 1921 151 24 0 chrX 95374054 95374352 -81599788 + AluJb SINE Alu 2 306 -6 763 114 0 15 chrX 95374352 95374484 -81599656 + (GGAA)n Simple_repeat Simple_repeat 1 130 0 205 306 42 0 chrX 95374579 95374651 -81599489 - MIR SINE MIR -118 144 70 205 254 15 30 chrX 95374698 95374765 -81599375 - MIR SINE MIR -155 107 42 628 224 0 8 chrX 95374933 95375067 -81599073 - MER94 DNA DNA -1 133 1 180 0 0 0 chrX 95375599 95375619 -81598521 + (CATTA)n Simple_repeat Simple_repeat 3 22 0 2267 96 0 3 chrX 95375833 95376134 -81598006 - AluSq SINE Alu -9 304 5 234 0 0 0 chrX 95376360 95376386 -81597754 + (TG)n Simple_repeat Simple_repeat 1 26 0 1709 160 0 52 chrX 95376502 95376808 -81597332 - AluJb SINE Alu -22 290 1 597 264 20 56 chrX 95377363 95377613 -81596527 + L2 LINE L2 3073 3313 0 271 188 0 0 chrX 95377629 95377674 -81596466 - MIR3 SINE MIR -11 197 153 874 236 48 26 chrX 95377674 95377903 -81596237 + MIR SINE MIR 2 235 -27 1061 243 168 22 chrX 95377907 95378370 -81595770 - LTR33A LTR ERVL 0 523 35 422 355 64 69 chrX 95379592 95380014 -81594126 - L2 LINE L2 -16 3256 2837 1098 238 110 88 chrX 95380343 95380661 -81593479 - L1ME4a LINE L1 -3 6118 5809 1866 163 7 3 chrX 95380661 95380962 -81593178 - AluJb SINE Alu -10 302 1 1098 238 110 88 chrX 95380962 95381476 -81592664 - L1ME4a LINE L1 -312 5809 5267 1315 181 96 48 chrX 95381733 95382025 -81592115 - AluJo SINE Alu -6 306 1 380 274 34 8 chrX 95382323 95382440 -81591700 - L1ME4a LINE L1 -1453 4693 4574 252 200 0 0 chrX 95383011 95383066 -81591074 + (CA)n Simple_repeat Simple_repeat 2 56 0 993 198 21 143 chrX 95383581 95383879 -81590261 + L1MB7 LINE L1 5848 6090 -94 1307 174 94 11 chrX 95383879 95384144 -81589996 + AluJb SINE Alu 1 287 -25 993 198 21 143 chrX 95384144 95384229 -81589911 + L1MB7 LINE L1 6090 6184 0 416 293 50 7 chrX 95384283 95384423 -81589717 + MIR SINE MIR 90 235 -27 3913 144 17 5 chrX 95384810 95385406 -81588734 - LTR26 LTR ERV1 0 603 1 640 289 37 5 chrX 95386919 95387106 -81587034 - MIR SINE MIR -68 194 2 330 245 128 80 chrX 95387266 95387515 -81586625 - MLT1H LTR MaLR -288 261 1 42869 60 3 3 chrX 95387543 95393691 -81580449 - L1PA5 LINE L1 0 6154 11 459 358 120 22 chrX 95393699 95394065 -81580075 + L2 LINE L2 2871 3272 0 1512 158 32 4 chrX 95395549 95395802 -81578338 - AluJo SINE Alu -52 260 1 998 257 70 75 chrX 95396050 95396215 -81577925 - L1MC4a LINE L1 -1800 6008 5844 897 128 0 0 chrX 95396215 95396332 -81577808 + FLAM_C SINE Alu 2 118 -15 998 257 70 75 chrX 95396332 95396875 -81577265 - L1MC4a LINE L1 -1964 5844 5303 1167 166 25 4 chrX 95397395 95397627 -81576513 - MER33 DNA MER1_type -255 69 1 2372 84 0 0 chrX 95397645 95397942 -81576198 - AluY SINE Alu -14 297 1 1304 282 72 53 chrX 95398065 95398803 -81575337 - HAL1 LINE L1 -1310 1197 446 734 306 20 49 chrX 95398824 95399170 -81574970 - HAL1 LINE L1 -2170 337 2 189 244 0 0 chrX 95399406 95399451 -81574689 - MIR3 SINE MIR -5 203 159 240 206 93 10 chrX 95399520 95399617 -81574523 - MER103 DNA DNA -2 164 60 237 298 75 11 chrX 95399810 95399904 -81574236 + L1ME LINE L1 267 366 -5753 2210 272 79 42 chrX 95399918 95400301 -81573839 + L1ME LINE L1 3442 3809 -2320 2116 118 47 0 chrX 95400301 95400598 -81573542 + AluSx SINE Alu 1 311 -1 2210 272 79 42 chrX 95400598 95400799 -81573341 + L1ME LINE L1 3809 4001 -2128 1305 219 19 32 chrX 95400799 95401110 -81573030 - AluJb SINE Alu -5 307 1 2210 272 79 42 chrX 95401110 95401690 -81572450 + L1ME LINE L1 4001 4650 -1479 1956 159 0 6 chrX 95401838 95402152 -81571988 - AluJb SINE Alu 0 312 1 273 304 0 0 chrX 95402249 95402328 -81571812 - L1ME1 LINE L1 -148 6018 5940 332 255 133 0 chrX 95402337 95402435 -81571705 + L1ME LINE L1 5545 5655 -498 279 245 11 32 chrX 95402534 95402628 -81571512 + T-rich Low_complexity Low_complexity 2 93 0 368 152 91 0 chrX 95403121 95403187 -81570953 + Tigger2 DNA MER2_type 1 72 -2646 * 1555 70 74 4 chrX 95403182 95403380 -81570760 + Tigger2 DNA MER2_type 2280 2498 -220 2050 123 9 25 chrX 95403380 95403697 -81570443 - AluSx SINE Alu 0 312 1 1555 70 74 4 chrX 95403697 95403728 -81570412 + Tigger2 DNA MER2_type 2498 2525 -193 244 283 211 24 chrX 95403766 95404017 -81570123 + L2 LINE L2 1975 2272 -1042 521 249 5 78 chrX 95404228 95404421 -81569719 + MIR SINE MIR 84 262 0 1661 218 30 0 chrX 95404597 95404928 -81569212 - MER58B DNA MER1_type 0 341 1 518 279 8 0 chrX 95405304 95405433 -81568707 - L2 LINE L2 -5 3308 3179 1574 291 45 45 chrX 95405517 95406427 -81567713 + L2 LINE L2 2292 3214 -99 349 226 0 24 chrX 95406436 95406520 -81567620 - L2 LINE L2 -950 2364 2283 2031 134 0 29 chrX 95406720 95407033 -81567107 - AluSx SINE Alu -8 304 1 2107 138 0 0 chrX 95409085 95409382 -81564758 - AluSx SINE Alu -15 297 1 1129 175 168 35 chrX 95409492 95409778 -81564362 - MLT2B1 LTR ERVL -5 515 192 234 254 14 0 chrX 95409832 95409903 -81564237 + CT-rich Low_complexity Low_complexity 2 73 0 1626 216 60 76 chrX 95410103 95410616 -81563524 - MLT1D LTR MaLR 0 505 1 328 157 108 24 chrX 95410770 95410853 -81563287 + MER3 DNA MER1_type 82 124 -85 484 200 31 39 chrX 95411179 95411309 -81562831 + MIR SINE MIR 131 259 -3 480 313 92 21 chrX 95411330 95411389 -81562751 + MIR SINE MIR 6 59 -203 2292 99 3 0 chrX 95411389 95411691 -81562449 - AluSg SINE Alu -7 303 1 480 313 92 21 chrX 95411691 95411871 -81562269 + MIR SINE MIR 59 262 0 1481 322 54 50 chrX 95412418 95412591 -81561549 - L2 LINE L2 -831 2483 2312 601 273 190 0 chrX 95412591 95412807 -81561333 - MIR SINE MIR -3 259 3 1481 322 54 50 chrX 95412807 95413189 -81560951 - L2 LINE L2 -1002 2312 1933 2138 125 0 0 chrX 95413189 95413485 -81560655 + AluSx SINE Alu 1 296 -16 1481 322 54 50 chrX 95413485 95414069 -81560071 - L2 LINE L2 -1381 1933 1338 1568 191 13 16 chrX 95414313 95414617 -81559523 - AluJo SINE Alu -9 303 1 2204 113 7 0 chrX 95414791 95415083 -81559057 - AluSq SINE Alu -19 294 1 454 243 98 69 chrX 95415364 95415427 -81558713 - MER5B DNA MER1_type 0 178 118 2470 32 0 0 chrX 95415427 95415704 -81558436 + AluY SINE Alu 17 293 -18 454 243 98 69 chrX 95415704 95415813 -81558327 - MER5B DNA MER1_type -60 118 1 2090 118 10 3 chrX 95416914 95417220 -81556920 - AluSx SINE Alu -4 308 1 235 279 16 0 chrX 95417531 95417592 -81556548 - MIR3 SINE MIR -52 156 95 2183 290 76 27 chrX 95420132 95421389 -81552751 - L2 LINE L2 -1 3312 1988 1067 245 119 72 chrX 95421389 95421961 -81552179 + MLT1G LTR MaLR 8 590 0 685 301 77 10 chrX 95421963 95422275 -81551865 - L2 LINE L2 -1368 1946 1614 181 291 0 18 chrX 95422289 95422344 -81551796 + L2 LINE L2 2594 2647 -667 189 200 111 0 chrX 95422490 95422535 -81551605 - MIR3 SINE MIR -22 186 137 2647 259 59 12 chrX 95422600 95423263 -81550877 - Zaphod DNA AcHobo -3337 694 1 231 318 45 0 chrX 95423366 95423454 -81550686 + L2 LINE L2 2555 2646 -668 245 105 0 0 chrX 95423518 95423556 -81550584 + Charlie7 DNA MER1_type 64 101 -2511 229 235 44 59 chrX 95423540 95423676 -81550464 + Charlie7 DNA MER1_type 2427 2560 -52 * 899 251 46 0 chrX 95424695 95424934 -81549206 - MIR SINE MIR 0 262 13 195 290 41 76 chrX 95425065 95425210 -81548930 + L2 LINE L2 2931 3070 -202 280 322 78 28 chrX 95425945 95426125 -81548015 + L2 LINE L2 3114 3302 -11 2264 102 0 0 chrX 95426125 95426418 -81547722 + AluSc SINE Alu 1 293 -16 1545 171 6 75 chrX 95426628 95426950 -81547190 + AluJb SINE Alu 1 300 -2 308 280 122 0 chrX 95427207 95427314 -81546826 - MIR SINE MIR -110 152 33 199 276 152 29 chrX 95427271 95427376 -81546764 + MIR3 SINE MIR 37 154 -54 * 2184 196 75 105 chrX 95427505 95427745 -81546395 - L1ME1 LINE L1 -54 6112 5866 298 79 0 0 chrX 95427745 95427783 -81546357 + Charlie4 DNA MER1_type 151 188 -1773 3119 48 24 0 chrX 95427784 95428155 -81545985 - L1PA7 LINE L1 0 6154 5775 2184 196 75 105 chrX 95428155 95428170 -81545970 - L1ME1 LINE L1 -300 5866 5852 2093 105 0 0 chrX 95428170 95428436 -81545704 - AluSx SINE Alu -46 266 1 2184 196 75 105 chrX 95428436 95428671 -81545469 - L1ME1 LINE L1 -314 5852 5611 1932 171 0 3 chrX 95428671 95428964 -81545176 - AluJb SINE Alu -20 292 1 2184 196 75 105 chrX 95428964 95429318 -81544822 - L1ME1 LINE L1 -555 5611 5254 1459 241 45 9 chrX 95429330 95429666 -81544474 - MLT1E2 LTR MaLR 0 626 279 3689 219 35 21 chrX 95429666 95430466 -81543674 - L1ME1 LINE L1 -1227 4919 4101 2868 67 11 3 chrX 95430466 95430827 -81543313 - L1PA13 LINE L1 0 6163 5800 3689 219 35 21 chrX 95430827 95431020 -81543120 - L1ME1 LINE L1 -2045 4101 3912 2523 46 3 13 chrX 95431029 95431333 -81542807 - L1PA4 LINE L1 -3 6152 5852 40016 50 5 3 chrX 95431333 95436270 -81537870 - L1PA4 LINE L1 -1198 4948 3 820 269 42 11 chrX 95436275 95436561 -81537579 - L1ME1 LINE L1 -2305 3841 3547 479 243 0 29 chrX 95436558 95436694 -81537446 - L1ME1 LINE L1 -2560 3586 3455 * 244 281 61 53 chrX 95438189 95438303 -81535837 + MIR SINE MIR 29 143 -119 22531 159 34 20 chrX 95438313 95441968 -81532172 + L1M1 LINE L1 13 3613 -3952 2526 74 0 0 chrX 95441968 95442277 -81531863 + AluY SINE Alu 1 309 -2 22531 159 34 20 chrX 95442277 95443074 -81531066 + L1M1 LINE L1 3613 4397 -3168 2325 105 0 0 chrX 95443074 95443369 -81530771 + AluSc SINE Alu 1 295 -14 22531 159 34 20 chrX 95443369 95443799 -81530341 + L1M1 LINE L1 4397 4819 -2746 4635 16 0 0 chrX 95443799 95444298 -81529842 + L1PA2 LINE L1 5657 6155 0 22531 159 34 20 chrX 95444298 95444311 -81529829 + L1M1 LINE L1 4819 4830 -2735 253 0 54 0 chrX 95444311 95444348 -81529792 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22531 159 34 20 chrX 95444348 95446163 -81527977 + L1M1 LINE L1 4830 6822 -743 255 273 154 0 chrX 95447153 95447263 -81526877 + L2 LINE L2 3137 3263 -9 387 341 83 42 chrX 95447433 95447867 -81526273 - L1MC4a LINE L1 -1752 6056 5605 428 122 200 11 chrX 95448454 95448544 -81525596 - L1MB1 LINE L1 -307 5882 5776 298 194 58 0 chrX 95448544 95448647 -81525493 + (TA)n Simple_repeat Simple_repeat 1 109 0 504 220 89 135 chrX 95448666 95448739 -81525401 + L1MA9 LINE L1 5881 5956 -335 1773 185 0 3 chrX 95448739 95449037 -81525103 + AluJo SINE Alu 1 297 -15 504 220 89 135 chrX 95449037 95449369 -81524771 + L1MA9 LINE L1 5956 6291 0 229 296 89 17 chrX 95449414 95449593 -81524547 + L1MC5 LINE L1 7607 7798 -163 537 251 86 31 chrX 95449593 95449756 -81524384 + FRAM SINE Alu 1 172 -4 184 254 119 30 chrX 95450018 95450085 -81524055 + MIR3 SINE MIR 132 204 -4 22 0 0 0 chrX 95450166 95450188 -81523952 + AT_rich Low_complexity Low_complexity 1 22 0 520 303 67 27 chrX 95450510 95450810 -81523330 - L1ME3A LINE L1 -238 5932 5621 733 254 34 11 chrX 95450857 95451034 -81523106 - L1MEd LINE L1 -5492 627 447 470 256 8 8 chrX 95451038 95451155 -81522985 - L1MEd LINE L1 -5940 179 63 488 335 18 13 chrX 95453060 95453287 -81520853 + L2 LINE L2 1727 1954 -1360 2531 159 56 49 chrX 95454990 95455056 -81519084 - MER44D DNA MER2_type -1882 605 541 252 0 0 0 chrX 95455056 95455084 -81519056 + (TA)n Simple_repeat Simple_repeat 1 28 0 2531 159 56 49 chrX 95455084 95455436 -81518704 - MER44D DNA MER2_type -1946 541 125 2296 94 3 0 chrX 95455436 95455733 -81518407 + AluSq SINE Alu 1 298 -15 2531 159 56 49 chrX 95455733 95455827 -81518313 - MER44D DNA MER2_type -2362 125 33 620 238 101 89 chrX 95456162 95456410 -81517730 - MIR SINE MIR 0 262 12 473 300 51 93 chrX 95457537 95457890 -81516250 + L2 LINE L2 2935 3272 0 939 206 109 8 chrX 95457956 95458194 -81515946 + MIR SINE MIR 1 262 0 610 292 89 17 chrX 95458961 95459197 -81514943 + MIR SINE MIR 8 260 -2 523 268 96 6 chrX 95459231 95459388 -81514752 - MIR SINE MIR -28 234 64 208 298 144 19 chrX 95459668 95459772 -81514368 + MIR SINE MIR 2 118 -144 960 229 112 0 chrX 95459772 95459986 -81514154 + Charlie1 DNA MER1_type 1 238 -2523 575 210 14 35 chrX 95459973 95460116 -81514024 + Charlie1 DNA MER1_type 2622 2761 0 * 478 287 42 0 chrX 95460116 95460259 -81513881 + MIR SINE MIR 111 259 -3 246 282 70 66 chrX 95460774 95461001 -81513139 + MIR SINE MIR 24 251 -11 523 313 26 15 chrX 95461631 95461826 -81512314 + MIR SINE MIR 65 261 -1 21 36 0 0 chrX 95462764 95462792 -81511348 + AT_rich Low_complexity Low_complexity 1 28 0 794 240 82 0 chrX 95462793 95462964 -81511176 - MIR SINE MIR -66 196 12 237 209 0 0 chrX 95464184 95464227 -81509913 + MARNA DNA Mariner 8 50 -536 1327 208 30 15 chrX 95465648 95465913 -81508227 - AluJo SINE Alu -23 289 21 488 204 21 0 chrX 95466260 95466353 -81507787 - MER58 DNA MER1_type -57 284 190 1435 150 81 75 chrX 95466353 95466687 -81507453 - MER101 LTR ERV1 0 474 139 326 143 0 63 chrX 95466718 95466781 -81507359 - MER5B DNA MER1_type -113 65 7 483 201 308 24 chrX 95467161 95467330 -81506810 + MIR SINE MIR 46 262 0 866 150 0 21 chrX 95467726 95467866 -81506274 + FLAM_C SINE Alu 5 141 -2 2489 70 0 6 chrX 95468161 95468473 -81505667 + AluY SINE Alu 1 310 -1 414 299 109 0 chrX 95468660 95468797 -81505343 + MIR3 SINE MIR 44 195 -13 275 234 62 0 chrX 95469758 95469822 -81504318 - MIR SINE MIR -103 105 38 623 224 37 43 chrX 95469898 95470059 -81504081 + MER97a DNA MER1_type? 20 179 -715 245 331 73 32 chrX 95470256 95470380 -81503760 - L2 LINE L2 -6 3307 3179 399 259 7 59 chrX 95470500 95470635 -81503505 + MIR SINE MIR 65 192 -70 300 217 43 14 chrX 95470663 95470732 -81503408 - L2 LINE L2 -2 3270 3200 947 276 19 27 chrX 95470787 95471048 -81503092 + MIR SINE MIR 4 262 0 2520 44 3 0 chrX 95471549 95471843 -81502297 - AluY SINE Alu -15 296 2 641 209 145 17 chrX 95472127 95472299 -81501841 + MER3 DNA MER1_type 2 195 -14 1725 184 34 3 chrX 95472325 95472618 -81501522 + AluJo SINE Alu 1 302 -10 404 318 61 35 chrX 95474378 95474576 -81499564 - MER115 DNA AcHobo -260 433 231 423 0 0 0 chrX 95474695 95474742 -81499398 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 587 263 146 19 chrX 95475080 95475293 -81498847 - MIR SINE MIR -21 241 2 207 287 31 78 chrX 95475927 95476056 -81498084 + L2 LINE L2 3179 3301 -12 1523 185 14 38 chrX 95476420 95476807 -81497333 + L1MB7 LINE L1 5655 6039 -145 414 250 67 55 chrX 95476818 95476949 -81497191 - MIR SINE MIR -74 188 53 621 173 7 67 chrX 95476949 95476995 -81497145 + L1MB8 LINE L1 6026 6073 -105 1981 138 0 0 chrX 95476995 95477319 -81496821 + AluSx SINE Alu 1 324 0 621 173 7 67 chrX 95477319 95477421 -81496719 + L1MB8 LINE L1 6073 6166 -12 414 250 67 55 chrX 95477421 95477453 -81496687 - MIR SINE MIR -209 53 23 286 303 0 34 chrX 95477481 95477570 -81496570 + MER5B DNA MER1_type 87 172 -6 1670 146 39 71 chrX 95477665 95477974 -81496166 - AluJb SINE Alu -13 299 1 2524 61 0 0 chrX 95478817 95479114 -81495026 + AluY SINE Alu 1 297 -14 267 79 0 0 chrX 95479580 95479618 -81494522 + (CA)n Simple_repeat Simple_repeat 1 38 0 8432 72 4 3 chrX 95480051 95481915 -81492225 + L1PA7 LINE L1 4318 6154 0 823 207 16 42 chrX 95481931 95482092 -81492048 - MER5A DNA MER1_type 0 189 32 648 189 18 0 chrX 95482092 95482203 -81491937 + MER81 DNA DNA 1 113 -1 823 207 16 42 chrX 95482203 95482234 -81491906 - MER5A DNA MER1_type -157 32 2 2046 186 122 13 chrX 95482329 95482798 -81491342 + MLT2B1 LTR ERVL 1 520 0 1940 118 0 64 chrX 95483079 95483399 -81490741 - AluSx SINE Alu 0 305 5 497 248 81 76 chrX 95483403 95483613 -81490527 + MIR SINE MIR 39 249 -13 4608 146 17 12 chrX 95483636 95484396 -81489744 + L1MA4A LINE L1 5531 6294 -9 2595 67 134 3 chrX 95484693 95485067 -81489073 + MER11A LTR ERVK 844 1266 0 637 214 0 16 chrX 95485124 95485250 -81488890 + MER20 DNA MER1_type 95 218 -1 4413 163 64 14 chrX 95485491 95486349 -81487791 - L1MB3 LINE L1 -1 6182 5282 361 344 149 27 chrX 95487153 95487374 -81486766 + MER115 DNA AcHobo 194 441 -252 2161 94 10 25 chrX 95487385 95487507 -81486633 + MER4A LTR ERV1 1 123 -541 279 0 0 0 chrX 95487507 95487538 -81486602 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2161 94 10 25 chrX 95487538 95487936 -81486204 + MER4A LTR ERV1 123 664 0 865 221 106 5 chrX 95487943 95488142 -81485998 + MER115 DNA AcHobo 470 688 -5 682 272 13 0 chrX 95488306 95488464 -81485676 + MIR SINE MIR 13 172 -90 4079 52 2 2 chrX 95489242 95489726 -81484414 - L1PA8 LINE L1 -7 6165 5682 478 328 54 11 chrX 95490029 95490215 -81483925 - MER115 DNA AcHobo -484 209 16 644 317 45 5 chrX 95490921 95491142 -81482998 - MIR SINE MIR -17 245 16 932 209 60 10 chrX 95491556 95491757 -81482383 + MIR SINE MIR 48 258 -4 198 118 0 0 chrX 95491887 95491921 -81482219 + (CA)n Simple_repeat Simple_repeat 2 35 0 2234 107 10 0 chrX 95492111 95492419 -81481721 - AluSx SINE Alu -1 311 1 216 0 0 0 chrX 95492427 95492451 -81481689 + (T)n Simple_repeat Simple_repeat 1 24 0 1026 173 0 35 chrX 95492561 95492763 -81481377 + AluJo SINE Alu 1 195 -117 352 36 0 36 chrX 95492846 95492902 -81481238 + (TTAAA)n Simple_repeat Simple_repeat 2 55 0 718 246 5 30 chrX 95494038 95494237 -81479903 - MIR SINE MIR -38 224 31 391 301 144 0 chrX 95494247 95494400 -81479740 - MIR SINE MIR -21 241 67 379 217 0 0 chrX 95494921 95494990 -81479150 + L2 LINE L2 3239 3307 -6 293 294 11 11 chrX 95495012 95495104 -81479036 - L2 LINE L2 -1738 1576 1485 419 277 92 0 chrX 95495147 95495288 -81478852 - MIR SINE MIR -48 214 61 2650 33 0 0 chrX 95495289 95495588 -81478552 - AluY SINE Alu -12 299 1 1324 340 117 15 chrX 95495671 95496620 -81477520 - L2 LINE L2 -1890 1424 379 324 48 0 0 chrX 95497179 95497221 -81476919 + (GA)n Simple_repeat Simple_repeat 1 42 0 499 285 40 20 chrX 95497712 95497863 -81476277 + MIR SINE MIR 3 156 -106 25 0 0 0 chrX 95498932 95498957 -81475183 + AT_rich Low_complexity Low_complexity 1 25 0 614 271 71 45 chrX 95499059 95499379 -81474761 - L2 LINE L2 -232 3040 2696 1001 248 127 32 chrX 95500390 95500793 -81473347 - MLT1J2 LTR MaLR -7 443 3 339 96 0 0 chrX 95501091 95501143 -81472997 + (TC)n Simple_repeat Simple_repeat 2 53 0 625 250 48 78 chrX 95502420 95502688 -81471452 + MIR SINE MIR 2 261 -1 528 59 0 0 chrX 95503433 95503501 -81470639 + (TA)n Simple_repeat Simple_repeat 1 68 0 207 329 0 29 chrX 95503969 95504039 -81470101 - L2 LINE L2 -17 3296 3229 338 266 130 30 chrX 95504160 95504329 -81469811 - MER5A DNA MER1_type 0 189 4 1157 263 96 17 chrX 95504487 95504894 -81469246 + MLT1J1 LTR MaLR 1 439 -7 25 0 0 0 chrX 95506390 95506415 -81467725 + AT_rich Low_complexity Low_complexity 1 25 0 919 251 31 12 chrX 95507754 95508009 -81466131 - MIR SINE MIR 0 262 3 229 247 52 0 chrX 95508142 95508230 -81465910 + MIR SINE MIR 63 146 -62 721 222 0 0 chrX 95508871 95508997 -81465143 + FLAM_A SINE Alu 1 126 -7 396 304 55 22 chrX 95509159 95509340 -81464800 - MIR SINE MIR 0 262 76 543 285 98 25 chrX 95509362 95509597 -81464543 + L2 LINE L2 3060 3311 -2 243 87 0 0 chrX 95509683 95509729 -81464411 - LTR66 LTR ERVL -171 439 394 23 0 0 0 chrX 95509739 95509762 -81464378 + AT_rich Low_complexity Low_complexity 1 23 0 267 304 0 0 chrX 95510691 95510747 -81463393 + L2 LINE L2 3246 3301 -12 1566 163 0 35 chrX 95510754 95510848 -81463292 - AluJo SINE Alu -15 297 201 2268 117 21 56 chrX 95510848 95511224 -81462916 + THE1B LTR MaLR 2 364 0 1566 163 0 35 chrX 95511224 95511412 -81462728 - AluJo SINE Alu -111 201 25 1614 90 17 43 chrX 95511637 95511871 -81462269 - MER30 DNA MER1_type 0 230 3 662 297 43 23 chrX 95513449 95513705 -81460435 + MIR SINE MIR 2 262 0 495 291 128 6 chrX 95514140 95514312 -81459828 + L3 LINE CR1 1231 1423 -154 27 0 0 0 chrX 95514793 95514820 -81459320 + AT_rich Low_complexity Low_complexity 1 27 0 713 187 41 8 chrX 95514824 95514947 -81459193 - FLAM_C SINE Alu -6 127 1 478 283 132 30 chrX 95516208 95516473 -81457667 + L2 LINE L2 2541 2832 -482 259 245 0 71 chrX 95516535 95516633 -81457507 - L2 LINE L2 -77 3236 3146 213 221 88 0 chrX 95516964 95517032 -81457108 - L2 LINE L2 -204 3109 3036 * 491 322 33 119 chrX 95517023 95517510 -81456630 + L2 LINE L2 2827 3271 -1 239 59 157 39 chrX 95517726 95517777 -81456363 + L1ME3 LINE L1 6103 6159 -3 261 0 0 0 chrX 95517944 95517973 -81456167 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 50 18 0 0 chrX 95517980 95518037 -81456103 + AT_rich Low_complexity Low_complexity 1 57 0 202 143 55 0 chrX 95518037 95518128 -81456012 + (TA)n Simple_repeat Simple_repeat 1 96 0 239 0 0 31 chrX 95518329 95518361 -81455779 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2008 145 122 13 chrX 95518454 95518840 -81455300 + MSTA LTR MaLR 1 428 0 610 339 67 0 chrX 95520769 95521008 -81453132 + L3 LINE CR1 1312 1566 -11 575 227 27 7 chrX 95521121 95521271 -81452869 - L1MD2 LINE L1 -2 6357 6205 22 0 0 0 chrX 95521278 95521300 -81452840 + AT_rich Low_complexity Low_complexity 1 22 0 2112 122 0 19 chrX 95521453 95521764 -81452376 - AluSx SINE Alu -7 305 1 1222 199 28 5 chrX 95521764 95522155 -81451985 - L1MD2 LINE L1 -226 6133 5555 533 265 161 54 chrX 95522183 95522406 -81451734 - MIR SINE MIR -13 249 3 726 284 16 21 chrX 95522584 95522778 -81451362 + MIR SINE MIR 20 212 -50 345 222 14 0 chrX 95523025 95523097 -81451043 - MER58A DNA MER1_type -10 214 142 1042 222 52 73 chrX 95523098 95523441 -81450699 + MER2 DNA MER2_type 2 337 -8 433 264 93 8 chrX 95523467 95523596 -81450544 - MER58A DNA MER1_type 0 141 2 966 124 15 0 chrX 95523738 95523875 -81450265 - MSTA LTR MaLR 0 428 290 1970 127 50 28 chrX 95523875 95524238 -81449902 - THE1C LTR MaLR 0 375 5 181 306 0 41 chrX 95524579 95524628 -81449512 - L2 LINE L2 -3251 63 17 441 369 6 6 chrX 95525408 95525568 -81448572 + MIR SINE MIR 2 161 -101 290 311 107 28 chrX 95527681 95527858 -81446282 + MIR3 SINE MIR 26 216 -46 191 272 110 52 chrX 95528146 95528282 -81445858 + MER5A DNA MER1_type 1 144 -45 2223 101 3 10 chrX 95528370 95528666 -81445474 + AluSq SINE Alu 1 294 -19 550 139 0 46 chrX 95528927 95529035 -81445105 + MER5A DNA MER1_type 1 103 -86 483 165 47 0 chrX 95529147 95529232 -81444908 + MER5A DNA MER1_type 101 189 0 189 175 0 0 chrX 95529497 95529537 -81444603 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 195 389 0 0 chrX 95529655 95529709 -81444431 + L3 LINE CR1 40 93 -1484 453 343 28 11 chrX 95530795 95530976 -81443164 + MIR3 SINE MIR 16 199 -9 2244 120 0 0 chrX 95531190 95531491 -81442649 + AluSx SINE Alu 1 301 -11 433 214 45 25 chrX 95531738 95531870 -81442270 - MLT1J2 LTR MaLR -204 205 67 824 223 38 5 chrX 95531962 95532146 -81441994 - MIR SINE MIR -26 236 47 981 244 53 23 chrX 95532237 95532540 -81441600 + MER20B DNA MER1_type 23 334 -449 1393 202 10 31 chrX 95532544 95532836 -81441304 - AluJo SINE Alu -25 287 2 1208 87 14 5 chrX 95532981 95533166 -81440974 - L1PA4 LINE L1 -143 6011 5815 839 192 24 0 chrX 95533188 95533355 -81440785 - MIR SINE MIR -24 238 68 922 247 30 8 chrX 95533402 95533669 -81440471 - L1MEc LINE L1 -4583 1813 1541 860 239 157 10 chrX 95533679 95533985 -81440155 + MER20B DNA MER1_type 433 783 0 1863 228 98 18 chrX 95534406 95534907 -81439233 - MLT1F LTR MaLR -1 541 1 229 317 0 0 chrX 95534963 95535023 -81439117 + (CATG)n Simple_repeat Simple_repeat 3 62 0 606 305 45 6 chrX 95535280 95535457 -81438683 + MIR SINE MIR 12 195 -67 182 185 185 31 chrX 95537179 95537244 -81436896 - MER5A DNA MER1_type -114 75 1 273 308 140 72 chrX 95537536 95537857 -81436283 - L2 LINE L2 -88 3184 2842 628 317 122 27 chrX 95537896 95538224 -81435916 + L2 LINE L2 2941 3299 -14 1562 169 50 14 chrX 95538262 95538540 -81435600 + AluJo SINE Alu 1 288 -24 861 255 31 35 chrX 95538540 95538830 -81435310 - L1MA10 LINE L1 -37 6297 6009 208 109 18 36 chrX 95539053 95539108 -81435032 + (TTTTTA)n Simple_repeat Simple_repeat 1 54 0 5478 86 0 3 chrX 95539108 95539849 -81434291 - L1PA8 LINE L1 -3 6169 5431 1656 179 35 27 chrX 95541050 95541422 -81432718 - MLT1A2 LTR MaLR 0 467 1 789 212 111 18 chrX 95541545 95541771 -81432369 + MIR SINE MIR 6 252 -10 1039 164 12 0 chrX 95542548 95542719 -81431421 + MLT1B LTR MaLR 218 390 0 3145 219 35 25 chrX 95542719 95544122 -81430018 - L1MC/D LINE L1 -651 6102 4683 1750 176 0 7 chrX 95544154 95544450 -81429690 - AluJb SINE Alu -18 294 1 2552 230 62 38 chrX 95544545 95545137 -81429003 - L1MC/D LINE L1 -2031 4509 3892 2430 63 0 10 chrX 95545137 95545438 -81428702 - AluY SINE Alu -13 298 1 2552 230 62 38 chrX 95545438 95545615 -81428525 - L1MC/D LINE L1 -2648 3892 3721 1795 225 55 70 chrX 95545617 95546155 -81427985 - L1MC/D LINE L1 -4031 2509 1983 7669 23 0 0 chrX 95546155 95547182 -81426958 - L1PA2 LINE L1 0 6155 5128 1795 225 55 70 chrX 95547182 95547384 -81426756 - L1MC/D LINE L1 -4557 1983 1780 6269 75 45 4 chrX 95547409 95548310 -81425830 - L1MA2 LINE L1 0 6304 5367 2062 201 83 58 chrX 95548309 95548369 -81425771 - L1MC/D LINE L1 -4748 1792 1735 * 369 0 0 0 chrX 95548369 95548410 -81425730 + (TG)n Simple_repeat Simple_repeat 2 42 0 2062 201 83 58 chrX 95548410 95549104 -81425036 - L1MC/D LINE L1 -4805 1735 1019 225 0 0 0 chrX 95549106 95549131 -81425009 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 350 306 38 130 chrX 95549165 95549527 -81424613 - L1MDa LINE L1 -5545 995 555 266 247 65 0 chrX 95549532 95549609 -81424531 - L1MDa LINE L1 -5898 642 561 321 390 43 30 chrX 95549727 95549958 -81424182 - L1MDa LINE L1 -5813 727 494 582 312 131 51 chrX 95549979 95550414 -81423726 - L2 LINE L2 -94 3219 2726 2644 55 0 0 chrX 95550414 95550725 -81423415 - AluY SINE Alu 0 311 1 582 312 131 51 chrX 95550725 95550943 -81423197 - L2 LINE L2 -587 2726 2527 249 258 113 25 chrX 95551694 95551853 -81422287 - LTR67 LTR ERVL -2 555 383 760 377 32 51 chrX 95552701 95553285 -81420855 - L1ME3 LINE L1 -308 5854 5282 483 177 0 0 chrX 95553289 95553385 -81420755 + L1MA5A LINE L1 6202 6297 0 23 0 0 0 chrX 95553391 95553414 -81420726 + AT_rich Low_complexity Low_complexity 1 23 0 1523 288 91 25 chrX 95553582 95554145 -81419995 + L1M4c LINE L1 17 616 -6173 * 2705 193 25 35 chrX 95554140 95554978 -81419162 + L1M4c LINE L1 2586 3415 -3373 * 4592 192 20 15 chrX 95554951 95555975 -81418165 + L1MA6 LINE L1 4776 5805 -983 5510 154 15 10 chrX 95555979 95557067 -81417073 + L1MA6 LINE L1 5844 6937 -5 1985 301 60 51 chrX 95557118 95558901 -81415239 - L1 LINE L1 -1086 5060 3305 4426 14 2 0 chrX 95558901 95559406 -81414734 - L1PA3 LINE L1 -4 6151 5646 1985 301 60 51 chrX 95559406 95559807 -81414333 - L1 LINE L1 -2841 3305 2909 2600 289 71 28 chrX 95559818 95561095 -81413045 - ERVL LTR ERVL -2344 3141 1813 348 305 66 20 chrX 95561433 95561584 -81412556 - L1ME3A LINE L1 0 6170 6013 21 0 0 0 chrX 95561657 95561678 -81412462 + AT_rich Low_complexity Low_complexity 1 21 0 316 246 118 71 chrX 95561692 95561903 -81412237 - L1ME3A LINE L1 -202 5968 5748 2045 172 16 19 chrX 95561938 95562170 -81411970 - MLT1A1 LTR MaLR 0 365 133 1329 191 87 77 chrX 95562170 95562562 -81411578 + MSTD LTR MaLR 1 396 0 2045 172 16 19 chrX 95562562 95562695 -81411445 - MLT1A1 LTR MaLR -232 133 1 324 281 50 32 chrX 95562794 95563135 -81411005 - L1MEd LINE L1 -5039 1080 734 207 0 0 0 chrX 95563194 95563217 -81410923 + (T)n Simple_repeat Simple_repeat 1 23 0 1939 163 7 0 chrX 95563226 95563532 -81410608 + AluSx SINE Alu 1 308 -4 237 402 16 0 chrX 95563535 95563662 -81410478 - L1MEd LINE L1 -5464 655 527 1507 155 44 56 chrX 95564302 95564644 -81409496 - L1MA7 LINE L1 -20 6271 5934 403 129 0 2 chrX 95564667 95564752 -81409388 + L1MA7 LINE L1 5874 5957 -343 1913 130 0 27 chrX 95564787 95565099 -81409041 + AluSx SINE Alu 1 304 0 309 222 22 67 chrX 95565186 95565276 -81408864 + L2 LINE L2 3165 3250 -63 265 317 91 11 chrX 95565312 95565498 -81408642 - LTR67 LTR ERVL -4 553 353 785 208 63 0 chrX 95566198 95566357 -81407783 - MER97c DNA MER1_type? -920 170 2 201 308 19 0 chrX 95566396 95566448 -81407692 - MIR SINE MIR -30 232 180 13323 45 22 3 chrX 95566477 95569154 -81404986 - L1PA4 LINE L1 -1 6154 3439 5987 55 1 0 chrX 95569156 95569905 -81404235 + L1PA7 LINE L1 5405 6154 0 565 227 22 60 chrX 95569958 95570143 -81403997 - MER5B DNA MER1_type 0 178 1 448 288 0 30 chrX 95570578 95570710 -81403430 - MER5B DNA MER1_type 0 178 51 1471 272 91 5 chrX 95570992 95571503 -81402637 + L2 LINE L2 2531 3080 -233 5401 144 39 8 chrX 95571503 95572082 -81402058 + L1MC1 LINE L1 5322 5945 -388 1179 198 68 50 chrX 95572082 95572420 -81401720 - MER2 DNA MER2_type 0 344 1 5401 144 39 8 chrX 95572420 95572822 -81401318 + L1MC1 LINE L1 5945 6333 0 755 229 28 23 chrX 95572853 95573071 -81401069 + L2 LINE L2 3094 3312 -1 629 257 36 86 chrX 95573140 95573410 -81400730 - MIR SINE MIR -7 255 1 712 117 8 0 chrX 95573772 95573892 -81400248 + L1MA7 LINE L1 6161 6281 -10 9819 32 2 1 chrX 95574646 95575908 -81398232 - L1PA3 LINE L1 -1831 4315 3053 8993 24 0 1 chrX 95575908 95577738 -81396402 + L1PA3 LINE L1 4327 6155 0 267 103 0 0 chrX 95577741 95577780 -81396360 + (A)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chrX 95578628 95578649 -81395491 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 95580694 95580716 -81393424 + AT_rich Low_complexity Low_complexity 1 22 0 203 306 47 24 chrX 95580839 95580924 -81393216 + L3b LINE CR1 1351 1437 -146 901 301 61 47 chrX 95581350 95581845 -81392295 + L2 LINE L2 2812 3313 0 255 286 184 0 chrX 95581851 95581949 -81392191 + L2 LINE L2 2942 3057 -215 1935 120 52 73 chrX 95582104 95582487 -81391653 - THE1C LTR MaLR 0 375 1 3606 209 66 35 chrX 95582536 95582622 -81391518 + L1M4b LINE L1 5 87 -6772 180 0 0 0 chrX 95582622 95582642 -81391498 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 3606 209 66 35 chrX 95582642 95583982 -81390158 + L1M4b LINE L1 87 1558 -5301 591 264 59 25 chrX 95583976 95584215 -81389925 + L1M4b LINE L1 2080 2326 -4633 * 914 180 0 28 chrX 95584236 95584414 -81389726 + MER2 DNA MER2_type 2 174 -171 1978 119 22 0 chrX 95584539 95584817 -81389323 - AluSq SINE Alu -29 284 1 350 254 0 0 chrX 95584817 95584888 -81389252 + MER2 DNA MER2_type 274 344 -1 624 274 57 22 chrX 95585173 95585575 -81388565 + L1M4b LINE L1 2565 2980 -4158 399 73 0 0 chrX 95585578 95585633 -81388507 + (CA)n Simple_repeat Simple_repeat 2 56 0 324 270 40 10 chrX 95585827 95585927 -81388213 + MIR SINE MIR 87 189 -73 9134 32 0 7 chrX 95586062 95587928 -81386212 - L1PA4 LINE L1 0 6155 4277 1768 163 27 3 chrX 95587986 95588287 -81385853 - AluJo SINE Alu -4 308 1 22 0 0 0 chrX 95588293 95588315 -81385825 + AT_rich Low_complexity Low_complexity 1 22 0 678 288 22 0 chrX 95588468 95588694 -81385446 - L1MC4a LINE L1 -1846 5962 5732 349 325 20 13 chrX 95589288 95589439 -81384701 - L1MC4a LINE L1 -2195 5613 5462 240 216 86 43 chrX 95589468 95589584 -81384556 - L1MC4a LINE L1 -791 5387 5267 211 284 69 88 chrX 95589763 95589865 -81384275 - MER5A DNA MER1_type -70 119 20 585 184 231 7 chrX 95590491 95590638 -81383502 - MER5A DNA MER1_type -6 183 4 285 125 0 0 chrX 95591119 95591159 -81382981 + Alu SINE Alu 238 277 -25 198 103 0 0 chrX 95591712 95591741 -81382399 + (A)n Simple_repeat Simple_repeat 1 29 0 858 116 0 25 chrX 95597358 95597479 -81376661 + AluJb SINE Alu 1 118 -194 2463 112 28 6 chrX 95598339 95598695 -81375445 + THE1B LTR MaLR 1 364 0 1854 161 3 26 chrX 95599543 95599854 -81374286 - AluJb SINE Alu -7 305 2 894 197 6 6 chrX 95600220 95600398 -81373742 - MER3 DNA MER1_type -30 179 2 500 296 69 61 chrX 95600598 95600959 -81373181 + L1ME4a LINE L1 4670 5033 -1113 315 250 300 20 chrX 95601197 95601397 -81372743 + L1ME4a LINE L1 5258 5513 -2295 362 298 87 24 chrX 95601417 95601749 -81372391 + L1ME4a LINE L1 5544 5896 -225 840 253 29 29 chrX 95602990 95603235 -81370905 - MIR SINE MIR 0 262 18 242 179 0 0 chrX 95603289 95603345 -81370795 + L1ME4a LINE L1 6062 6117 -4 202 374 93 51 chrX 95603637 95603969 -81370171 + L2 LINE L2 999 1344 -1970 342 340 82 42 chrX 95604184 95604634 -81369506 - L2 LINE L2 -1981 1333 866 1622 230 71 14 chrX 95604784 95605280 -81368860 + L1MC4 LINE L1 6450 6973 -1069 252 187 53 0 chrX 95605454 95605529 -81368611 - LTR33 LTR ERVL -442 79 1 602 208 223 39 chrX 95605537 95605873 -81368267 + HAL1 LINE L1 1751 2148 -359 3477 129 12 17 chrX 95606148 95606723 -81367417 + L1PA15 LINE L1 5591 6162 -3 276 272 48 32 chrX 95607793 95607918 -81366222 + MIR3 SINE MIR 76 202 -6 5752 33 14 0 chrX 95608566 95609255 -81364885 + L1PA4 LINE L1 5450 6148 -7 228 325 0 12 chrX 95609595 95609675 -81364465 + MIR SINE MIR 67 145 -63 48 53 0 0 chrX 95612772 95612848 -81361292 + AT_rich Low_complexity Low_complexity 1 76 0 633 238 135 16 chrX 95613053 95613238 -81360902 - L2 LINE L2 -2 3311 3105 373 202 11 11 chrX 95613246 95613335 -81360805 - MER103 DNA DNA -46 120 32 442 318 124 51 chrX 95613346 95613809 -81360331 - L2 LINE L2 -198 3074 2579 2550 139 26 5 chrX 95614036 95614459 -81359681 + MSTB1 LTR MaLR 1 432 0 298 315 22 0 chrX 95614605 95614697 -81359443 + MIR SINE MIR 153 246 -16 1238 87 0 29 chrX 95615629 95615837 -81358303 - AluY SINE Alu 0 311 133 1278 50 0 0 chrX 95615837 95615996 -81358144 - L1PA5 LINE L1 -4 6150 5992 194 351 11 43 chrX 95616069 95616163 -81357977 - MIR SINE MIR -141 121 31 209 271 48 127 chrX 95617147 95617313 -81356827 + MIR3 SINE MIR 16 168 -40 264 314 74 25 chrX 95618240 95618361 -81355779 - MIR3 SINE MIR -52 156 30 321 279 0 0 chrX 95618935 95619003 -81355137 - L2 LINE L2 0 3313 3246 203 318 15 0 chrX 95619091 95619157 -81354983 + MIR3 SINE MIR 142 208 0 359 260 79 92 chrX 95619313 95619682 -81354458 + MARNA DNA Mariner 154 517 -69 208 233 142 75 chrX 95619857 95619977 -81354163 - L3b LINE CR1 0 1583 1456 230 291 0 13 chrX 95620081 95620160 -81353980 - L3b LINE CR1 -351 1232 1155 781 256 6 0 chrX 95621023 95621187 -81352953 - MER45A DNA AcHobo -13 165 1 474 371 121 4 chrX 95621348 95621588 -81352552 + L3 LINE CR1 1303 1570 -7 1568 87 5 0 chrX 95622630 95622848 -81351292 - L1PA7 LINE L1 0 6154 5936 262 111 0 0 chrX 95622857 95622893 -81351247 + L1PA7 LINE L1 5907 5942 -212 40226 39 23 2 chrX 95623493 95629516 -81344624 + L1PA2 LINE L1 1 6153 -2 422 316 56 114 chrX 95629892 95630268 -81343872 - L2 LINE L2 0 3272 2919 261 57 0 0 chrX 95630401 95630436 -81343704 + (TG)n Simple_repeat Simple_repeat 2 36 0 192 179 0 0 chrX 95630436 95630475 -81343665 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 23 0 0 0 chrX 95630487 95630510 -81343630 + AT_rich Low_complexity Low_complexity 1 23 0 182 274 26 142 chrX 95630562 95630675 -81343465 - L2 LINE L2 -488 2826 2727 807 166 40 7 chrX 95630864 95631015 -81343125 + L1PA16 LINE L1 6002 6157 -9 2170 186 50 71 chrX 95631044 95631610 -81342530 + MLT2B3 LTR ERVL 1 554 0 328 354 114 25 chrX 95631643 95631900 -81342240 - L2 LINE L2 -799 2515 2283 493 191 48 112 chrX 95631900 95632088 -81342052 + MER5B DNA MER1_type 1 176 -2 328 354 114 25 chrX 95632088 95632319 -81341821 - L2 LINE L2 -1031 2283 1983 1602 55 0 0 chrX 95633091 95633290 -81340850 + L1PA3 LINE L1 5957 6155 0 180 330 57 52 chrX 95633502 95633696 -81340444 + L2 LINE L2 2865 3059 -213 467 307 57 0 chrX 95633804 95633944 -81340196 + MIR SINE MIR 6 153 -109 778 220 121 27 chrX 95633970 95634193 -81339947 + MIR SINE MIR 13 256 -6 216 0 0 0 chrX 95635495 95635519 -81338621 + (CA)n Simple_repeat Simple_repeat 2 25 0 479 260 68 44 chrX 95635616 95636001 -81338139 + L1ME4a LINE L1 5548 5941 -180 23 0 0 0 chrX 95636115 95636138 -81338002 + AT_rich Low_complexity Low_complexity 1 23 0 1315 248 114 25 chrX 95636196 95636862 -81337278 + L1MC4a LINE L1 5851 6575 -1233 424 383 70 8 chrX 95637002 95637388 -81336752 + L1MEc LINE L1 58 467 -5929 23 33 0 0 chrX 95638244 95638274 -81335866 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chrX 95639971 95640008 -81334132 + AT_rich Low_complexity Low_complexity 1 37 0 204 182 36 0 chrX 95640156 95640211 -81333929 + (CAAA)n Simple_repeat Simple_repeat 2 58 0 258 32 0 0 chrX 95640637 95640668 -81333472 + (TG)n Simple_repeat Simple_repeat 2 32 0 362 201 20 20 chrX 95640668 95640684 -81333456 + (TA)n Simple_repeat Simple_repeat 2 17 -128 1610 165 19 0 chrX 95640684 95640950 -81333190 - AluJb SINE Alu -31 281 11 362 201 20 20 chrX 95640950 95641077 -81333063 + (TA)n Simple_repeat Simple_repeat 16 145 0 359 284 0 11 chrX 95642885 95642973 -81331167 + L2 LINE L2 2710 2796 -518 6755 66 11 0 chrX 95642985 95644394 -81329746 - L1PA6 LINE L1 0 6154 4740 18880 67 2 3 chrX 95644394 95647031 -81327109 + L1PA6 LINE L1 2106 4741 -1405 493 311 139 14 chrX 95647033 95647347 -81326793 + L2 LINE L2 2792 3144 -169 540 188 87 47 chrX 95649013 95649162 -81324978 + L2 LINE L2 3158 3312 -1 554 251 58 23 chrX 95649390 95649707 -81324433 + LTR16C LTR ERVL 89 490 -1 604 258 127 9 chrX 95650555 95650768 -81323372 - MIR SINE MIR -13 249 12 421 331 89 0 chrX 95652221 95652390 -81321750 - L3 LINE CR1 -13 1564 1381 324 325 8 8 chrX 95652735 95652861 -81321279 + MLT1J LTR MaLR 47 172 -339 229 294 0 35 chrX 95652895 95652980 -81321160 + L3 LINE CR1 1269 1350 -227 395 281 113 34 chrX 95653115 95653443 -81320697 + L1MC/D LINE L1 5514 5867 -304 1112 271 45 37 chrX 95654677 95655080 -81319060 + MLT1I LTR MaLR 3 408 -1 195 378 56 0 chrX 95655138 95655228 -81318912 - L3 LINE CR1 -479 1098 1004 261 283 81 30 chrX 95655253 95655352 -81318788 + L2 LINE L2 3210 3313 0 993 296 120 30 chrX 95655366 95655832 -81318308 - L3 LINE CR1 -739 838 331 738 305 111 88 chrX 95655834 95656869 -81317271 - L2 LINE L2 0 3272 1678 229 164 55 18 chrX 95656869 95656924 -81317216 - L1MC3 LINE L1 -396 7389 7333 738 305 111 88 chrX 95656924 95657277 -81316863 - L2 LINE L2 -1594 1678 1335 301 183 0 56 chrX 95657435 95657506 -81316634 + L1PA12 LINE L1 6089 6155 -13 252 288 25 62 chrX 95658460 95658620 -81315520 + L1ME LINE L1 5453 5606 -515 514 247 35 23 chrX 95658812 95658831 -81315309 + L1ME LINE L1 5647 5664 -457 2135 113 13 7 chrX 95658831 95659131 -81315009 + AluSq SINE Alu 1 302 -11 514 247 35 23 chrX 95659131 95659285 -81314855 + L1ME LINE L1 5664 5822 -299 12415 198 27 44 chrX 95659287 95663773 -81310367 + L1M1 LINE L1 2 4388 -2460 510 57 0 0 chrX 95663773 95663843 -81310297 + (CA)n Simple_repeat Simple_repeat 1 70 0 12415 198 27 44 chrX 95663843 95664623 -81309517 + L1M1 LINE L1 4388 5179 -1669 37396 42 1 1 chrX 95664626 95670775 -81303365 + L1PA4 LINE L1 3 6153 -2 4466 144 8 17 chrX 95670777 95671018 -81303122 + L1M1 LINE L1 5173 5415 -1517 2153 104 0 61 chrX 95671018 95671170 -81302970 + AluSx SINE Alu 1 124 -188 2229 105 0 3 chrX 95671170 95671465 -81302675 + AluSg SINE Alu 2 295 -15 2153 104 0 61 chrX 95671465 95671639 -81302501 + AluSx SINE Alu 124 307 -5 4466 144 8 17 chrX 95671639 95672421 -81301719 + L1M1 LINE L1 5415 6189 -743 346 294 80 38 chrX 95672588 95672826 -81301314 - L1MC4a LINE L1 -1941 5867 5620 * 3263 129 16 4 chrX 95672775 95673561 -81300579 + L1MA4A LINE L1 5451 6297 -6 22 0 0 0 chrX 95673562 95673584 -81300556 + AT_rich Low_complexity Low_complexity 1 22 0 721 102 0 9 chrX 95674103 95674123 -81300017 + L1PA5 LINE L1 5840 5859 -295 1691 29 5 0 chrX 95674123 95674327 -81299813 - L1PA4 LINE L1 -3 6152 5948 721 102 0 9 chrX 95674327 95674414 -81299726 + L1PA4 LINE L1 5859 5946 -208 2129 103 7 3 chrX 95674509 95674791 -81299349 + AluSc SINE Alu 11 293 -16 309 89 0 0 chrX 95675274 95675319 -81298821 + (CA)n Simple_repeat Simple_repeat 2 46 0 368 315 98 21 chrX 95675345 95675488 -81298652 - L2 LINE L2 -1 3271 3118 207 269 77 0 chrX 95675548 95675600 -81298540 + MIR SINE MIR 206 261 -1 * 506 287 69 32 chrX 95675594 95675782 -81298358 - MIR SINE MIR -64 198 4 215 194 0 0 chrX 95676040 95676076 -81298064 + polypurine Low_complexity Low_complexity 5 40 0 224 130 22 0 chrX 95676397 95676443 -81297697 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 464 285 128 44 chrX 95676727 95676898 -81297242 - L1MC4a LINE L1 -750 5396 5597 186 43 0 0 chrX 95676898 95676921 -81297219 + (TATATG)n Simple_repeat Simple_repeat 5 27 0 464 285 128 44 chrX 95676921 95677269 -81296871 - L1MC4a LINE L1 -548 5598 5281 878 260 10 5 chrX 95678018 95678226 -81295914 + MER63A DNA MER1_type 1 209 -1 1367 143 107 98 chrX 95679960 95680296 -81293844 - L1PA15-16 LINE L1 -5951 898 560 246 156 78 0 chrX 95680298 95680375 -81293765 + (TA)n Simple_repeat Simple_repeat 1 83 0 276 116 70 23 chrX 95680623 95680709 -81293431 + (TTATA)n Simple_repeat Simple_repeat 5 94 0 2524 67 0 3 chrX 95680946 95681258 -81292882 - AluY SINE Alu 0 311 1 763 96 9 0 chrX 95681285 95681400 -81292740 - L1PB2 LINE L1 -6 6145 6030 430 356 57 15 chrX 95681448 95681727 -81292413 + L2 LINE L2 2778 3069 -203 17465 178 51 10 chrX 95681945 95684492 -81289648 + L1PA16 LINE L1 1 2441 -4408 6751 79 9 0 chrX 95684492 95684661 -81289479 + L1PA10 LINE L1 4982 5148 -1020 4837 112 4 13 chrX 95684661 95685358 -81288782 - LTR8 LTR ERV1 0 691 1 6751 79 9 0 chrX 95685358 95685387 -81288753 + L1PA10 LINE L1 5148 5175 -993 200 33 0 33 chrX 95685387 95685417 -81288723 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6751 79 9 0 chrX 95685417 95686396 -81287744 + L1PA10 LINE L1 5175 6164 -4 17465 178 51 10 chrX 95686396 95689660 -81284480 + L1PA16 LINE L1 2441 6092 -757 4226 139 23 8 chrX 95689690 95689751 -81284389 + L1P3 LINE L1 502 561 -5900 2613 58 0 0 chrX 95689751 95690060 -81284080 - AluY SINE Alu -2 309 1 4226 139 23 8 chrX 95690060 95690723 -81283417 + L1P3 LINE L1 561 1237 -5224 * 6325 32 5 0 chrX 95690720 95691507 -81282633 - L1P LINE L1 -1389 4757 3967 10348 113 3 17 chrX 95691548 95693268 -81280872 + L1P3 LINE L1 1257 2952 -3509 * 29661 107 22 54 chrX 95693267 95699574 -81274566 - L1PA7 LINE L1 -42 6112 12 1810 142 36 0 chrX 95699586 95699889 -81274251 - L1P4 LINE L1 -382 5783 5470 1083 109 6 0 chrX 95699908 95700073 -81274067 + L1PA16 LINE L1 6164 6329 -540 678 128 0 0 chrX 95700084 95700193 -81273947 + L1PA16 LINE L1 6757 6865 -4 2236 43 7 0 chrX 95700209 95700487 -81273653 + L1PA5 LINE L1 5875 6154 0 3373 120 17 4 chrX 95700574 95701099 -81273041 + L1PA16 LINE L1 6334 6865 -4 405 0 0 0 chrX 95701920 95701965 -81272175 + (TG)n Simple_repeat Simple_repeat 1 45 0 1726 174 39 4 chrX 95702070 95702351 -81271789 + AluJb SINE Alu 3 293 -19 25 0 0 0 chrX 95702351 95702376 -81271764 + AT_rich Low_complexity Low_complexity 1 25 0 187 319 115 9 chrX 95702400 95702513 -81271627 - L2 LINE L2 -2 3311 3187 21 0 0 0 chrX 95702708 95702729 -81271411 + AT_rich Low_complexity Low_complexity 1 21 0 464 287 33 39 chrX 95703726 95703907 -81270233 + L2 LINE L2 2303 2482 -832 431 311 105 72 chrX 95703917 95704251 -81269889 + L2 LINE L2 2355 2719 -595 1990 122 3 39 chrX 95704251 95704562 -81269578 - AluSx SINE Alu -12 300 1 431 311 105 72 chrX 95704562 95704828 -81269312 + L2 LINE L2 2719 2975 -339 24 0 0 0 chrX 95705041 95705065 -81269075 + AT_rich Low_complexity Low_complexity 1 24 0 1908 182 47 4 chrX 95705203 95705653 -81268487 + Charlie4a DNA MER1_type 39 507 -1 297 298 81 16 chrX 95705703 95705827 -81268313 - MER5A DNA MER1_type -57 132 1 192 179 0 0 chrX 95706180 95706219 -81267921 + (CCA)n Simple_repeat Simple_repeat 1 39 0 886 301 148 31 chrX 95706264 95707101 -81267039 + L2 LINE L2 2379 3313 0 267 272 0 43 chrX 95707371 95707463 -81266677 - L2 LINE L2 -9 3304 3217 * 471 202 10 19 chrX 95707456 95707560 -81266580 + L2 LINE L2 3200 3302 -11 221 305 53 83 chrX 95707708 95708106 -81266034 - L2 LINE L2 -210 3062 2608 * 314 313 97 22 chrX 95708103 95708237 -81265903 - MIR3 SINE MIR -46 162 19 444 37 0 0 chrX 95709421 95709475 -81264665 + (CA)n Simple_repeat Simple_repeat 2 55 0 243 0 0 0 chrX 95709551 95709578 -81264562 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 391 326 63 23 chrX 95710785 95710960 -81263180 - MIR3 SINE MIR -13 195 14 2192 137 0 0 chrX 95711271 95711578 -81262562 + AluSx SINE Alu 1 307 -5 3047 80 25 16 chrX 95712036 95712446 -81261694 + MLT2A2 LTR ERVL 1 417 -36 808 95 79 0 chrX 95712446 95712572 -81261568 - MER85 DNA T2_type 0 139 4 3047 80 25 16 chrX 95712572 95712610 -81261530 + MLT2A2 LTR ERVL 417 453 0 231 216 0 0 chrX 95714155 95714192 -81259948 + MER5A DNA MER1_type 153 189 0 238 284 20 49 chrX 95714201 95714303 -81259837 + MER5A DNA MER1_type 37 135 -54 641 270 6 25 chrX 95714343 95714502 -81259638 - MIR SINE MIR -37 225 70 6151 91 9 3 chrX 95715149 95716159 -81257981 + L1PA13 LINE L1 5131 6144 -19 521 0 109 5 chrX 95716192 95716375 -81257765 + (TA)n Simple_repeat Simple_repeat 1 202 0 312 303 11 0 chrX 95716376 95716465 -81257675 + L1MC4 LINE L1 6614 6703 -1339 23 54 0 0 chrX 95716657 95716694 -81257446 + AT_rich Low_complexity Low_complexity 1 37 0 192 250 0 0 chrX 95717157 95717197 -81256943 - L2 LINE L2 -12 3301 3262 342 295 9 27 chrX 95717338 95717418 -81256722 + MIR3 SINE MIR 81 160 -48 506 268 5 32 chrX 95717418 95717608 -81256532 - MER5A DNA MER1_type 0 189 5 342 295 9 27 chrX 95717608 95717639 -81256501 + MIR3 SINE MIR 160 190 -18 2102 166 26 28 chrX 95717925 95718383 -81255757 + L1MB7 LINE L1 5711 6167 -17 2019 153 3 10 chrX 95718428 95718741 -81255399 + AluSx SINE Alu 1 311 -1 1064 85 14 38 chrX 95718744 95719121 -81255019 + (GAAA)n Simple_repeat Simple_repeat 1 367 0 571 141 47 0 chrX 95719787 95719872 -81254268 + AluS SINE Alu 1 89 -223 259 305 145 15 chrX 95721464 95721733 -81252407 - L2 LINE L2 -1666 1648 1345 297 51 0 0 chrX 95722290 95722329 -81251811 + (GA)n Simple_repeat Simple_repeat 1 39 0 624 260 44 54 chrX 95722658 95722759 -81251381 - MIR SINE MIR -16 246 146 2213 116 0 0 chrX 95722759 95723060 -81251080 - AluSx SINE Alu -10 302 2 624 260 44 54 chrX 95723060 95723162 -81250978 - MIR SINE MIR -116 146 45 213 278 56 14 chrX 95723207 95723279 -81250861 - MIR SINE MIR -93 115 41 388 230 126 0 chrX 95723310 95723397 -81250743 + MER5A DNA MER1_type 4 101 -88 403 296 133 7 chrX 95724513 95724648 -81249492 - L2 LINE L2 0 3272 3121 1731 259 33 62 chrX 95724755 95725366 -81248774 - MLT1E LTR MaLR 0 593 1 214 270 14 14 chrX 95725889 95725963 -81248177 + CT-rich Low_complexity Low_complexity 1 74 0 505 300 61 45 chrX 95725983 95726062 -81248078 - MLT1J LTR MaLR -117 394 318 3527 129 8 8 chrX 95726062 95726589 -81247551 - MER1A DNA MER1_type 0 527 1 505 300 61 45 chrX 95726589 95726601 -81247539 - MLT1J LTR MaLR -193 318 308 912 210 128 5 chrX 95726601 95726796 -81247344 + MER58A DNA MER1_type 5 223 -1 505 300 61 45 chrX 95726796 95727016 -81247124 - MLT1J LTR MaLR -203 308 77 205 341 0 0 chrX 95727052 95727137 -81247003 - MIR SINE MIR -105 157 73 1009 242 14 5 chrX 95728142 95728353 -81245787 - MIR SINE MIR -19 243 31 391 296 112 8 chrX 95730413 95730538 -81243602 + L2 LINE L2 3117 3254 -18 690 265 65 9 chrX 95730595 95730810 -81243330 - MIR SINE MIR -4 258 32 328 328 22 54 chrX 95731162 95731347 -81242793 - L2 LINE L2 -336 2977 2800 691 237 75 35 chrX 95732050 95732278 -81241862 - MIR SINE MIR -6 256 20 328 278 93 19 chrX 95732800 95732908 -81241232 + L2 LINE L2 3189 3304 -9 528 236 8 21 chrX 95733035 95733198 -81240942 + MIR SINE MIR 6 150 -58 264 296 86 0 chrX 95733280 95733361 -81240779 - MIR SINE MIR -57 205 118 187 309 25 62 chrX 95735050 95735131 -81239009 + MIR SINE MIR 63 140 -68 236 316 74 11 chrX 95736013 95736108 -81238032 + MIR SINE MIR 5 105 -157 3743 204 59 13 chrX 95736648 95737590 -81236550 + L1MB5 LINE L1 5185 6166 -8 2539 135 62 2 chrX 95737617 95738040 -81236100 + Tigger3b DNA MER2_type 4 451 -780 1287 87 22 0 chrX 95738028 95738211 -81235929 + Tigger3b DNA MER2_type 970 1156 -75 * 259 225 22 56 chrX 95739784 95739873 -81234267 + L3b LINE CR1 1290 1375 -208 181 262 143 36 chrX 95740150 95740234 -81233906 + L3b LINE CR1 1482 1574 -9 207 184 0 0 chrX 95740547 95740585 -81233555 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 410 300 100 6 chrX 95740608 95740768 -81233372 - MLT1J2 LTR MaLR -7 443 269 286 279 44 73 chrX 95740776 95740912 -81233228 - MLT1J2 LTR MaLR -293 157 26 6035 169 12 20 chrX 95740953 95741247 -81232893 - L1P LINE L1 -1873 4273 3978 1807 157 65 14 chrX 95741247 95741603 -81232537 + THE1C LTR MaLR 1 374 -1 6035 169 12 20 chrX 95741603 95742482 -81231658 - L1P LINE L1 -2168 3978 3110 6077 90 16 26 chrX 95742483 95744410 -81229730 + L1PA13 LINE L1 4244 6163 0 6444 25 9 0 chrX 95744565 95745326 -81228814 - L1PA4 LINE L1 -1 6154 5387 1820 146 58 22 chrX 95745335 95745697 -81228443 + THE1C LTR MaLR 1 375 0 928 230 11 5 chrX 95745760 95745947 -81228193 - MER58A DNA MER1_type -1 223 36 280 305 132 11 chrX 95746173 95746363 -81227777 - MLT1K LTR MaLR -6 582 370 315 272 44 53 chrX 95746463 95746577 -81227563 - MLT1K LTR MaLR -362 226 114 5926 108 13 0 chrX 95747811 95748654 -81225486 + L1PA10 LINE L1 5315 6168 0 1341 240 37 6 chrX 95749065 95749390 -81224750 - MER58B DNA MER1_type 0 341 7 1532 289 97 35 chrX 95750441 95751288 -81222852 + L1MEd LINE L1 242 1156 -4963 1134 29 0 0 chrX 95751288 95751425 -81222715 + L1PA4 LINE L1 6013 6149 -6 1532 289 97 35 chrX 95751425 95751529 -81222611 + L1MEd LINE L1 1156 1252 -4867 1467 207 10 0 chrX 95751681 95751844 -81222296 - L1 LINE L1 -1196 4950 4781 7946 86 6 3 chrX 95751844 95753732 -81220408 - L1PA7 LINE L1 -4 6150 4256 1467 207 10 0 chrX 95753732 95753872 -81220268 - L1 LINE L1 -1365 4781 4644 * 5293 143 32 32 chrX 95753864 95755066 -81219074 + L1PB4 LINE L1 4955 6156 0 423 332 84 11 chrX 95755078 95755340 -81218800 + L1MEd LINE L1 1451 1731 -4579 1929 182 76 29 chrX 95755390 95755836 -81218304 + MLT1C LTR MaLR 1 467 0 280 105 0 0 chrX 95756420 95756458 -81217682 + MER58 DNA MER1_type 50 87 -254 2363 125 5 3 chrX 95756459 95756827 -81217313 - L1PA13 LINE L1 -6 6157 5789 232 306 93 18 chrX 95756872 95757150 -81216990 + L1MEd LINE L1 2231 2529 -3600 5580 25 2 0 chrX 95757187 95757831 -81216309 - L1PA3 LINE L1 -11 6144 5500 195 326 153 0 chrX 95859615 95859713 -81114427 + L2 LINE L2 3143 3255 -17 453 279 169 31 chrX 95859901 95860391 -81113749 - MLT1K LTR MaLR -11 604 17 1998 168 3 0 chrX 95860599 95860902 -81113238 + AluJb SINE Alu 1 304 -8 276 308 8 34 chrX 95861661 95861778 -81112362 - MIR3 SINE MIR -12 196 83 1431 60 0 0 chrX 95862887 95863069 -81111071 + L1PA13 LINE L1 5977 6158 -5 730 274 79 0 chrX 95863110 95863351 -81110789 + MIR SINE MIR 2 261 -1 186 143 0 0 chrX 95863353 95863388 -81110752 + (TGG)n Simple_repeat Simple_repeat 1 35 0 628 283 5 88 chrX 95864659 95864864 -81109276 - MIR3 SINE MIR -12 196 9 241 327 115 4 chrX 95865071 95865266 -81108874 - MER20B DNA MER1_type -4 215 1 317 281 39 65 chrX 95865379 95865532 -81108608 - L2 LINE L2 -556 2758 2610 1034 150 53 7 chrX 95865545 95865790 -81108350 + L1MA8 LINE L1 6034 6286 -26 27 29 0 0 chrX 95865811 95865845 -81108295 + AT_rich Low_complexity Low_complexity 1 34 0 695 276 158 0 chrX 95867044 95867265 -81106875 + MIR SINE MIR 6 261 -1 261 180 0 0 chrX 95867347 95867397 -81106743 + GA-rich Low_complexity Low_complexity 4 53 0 360 0 0 0 chrX 95867399 95867439 -81106701 + (CAGG)n Simple_repeat Simple_repeat 2 41 0 7758 149 10 11 chrX 95868464 95869920 -81104220 + L1MA1 LINE L1 3371 4825 -1321 2235 104 104 17 chrX 95869920 95870265 -81103875 + THE1C LTR MaLR 1 375 0 7036 108 62 40 chrX 95870265 95871509 -81102631 + THE1C-int LTR MaLR 1 1216 -364 2166 119 0 3 chrX 95871509 95871906 -81102234 + AluSx SINE Alu 1 301 -11 1229 78 0 17 chrX 95871825 95872005 -81102135 + (GGAGAA)n Simple_repeat Simple_repeat 3 179 0 7036 108 62 40 chrX 95871906 95872319 -81101821 + THE1C-int LTR MaLR 1216 1579 -1 2684 101 3 8 chrX 95872319 95872696 -81101444 + THE1C LTR MaLR 1 375 0 6763 135 24 2 chrX 95872696 95874143 -81099997 + L1MA1 LINE L1 4822 6302 0 312 355 53 13 chrX 95874283 95874435 -81099705 - MIR SINE MIR -30 232 75 235 349 35 35 chrX 95874519 95874605 -81099535 - MIR SINE MIR -155 107 22 487 206 99 0 chrX 95876031 95876172 -81097968 - L1ME4a LINE L1 -5 6116 5962 2106 253 124 18 chrX 95876229 95877289 -81096851 + L2 LINE L2 2135 3312 -1 748 107 8 16 chrX 95878273 95878394 -81095746 - L1PA15 LINE L1 -10 6155 6036 255 244 0 39 chrX 95878450 95878528 -81095612 + MIR SINE MIR 100 174 -88 236 301 117 19 chrX 95879650 95879753 -81094387 + MIR3 SINE MIR 2 114 -94 189 0 0 0 chrX 95881506 95881527 -81092613 + (CA)n Simple_repeat Simple_repeat 1 21 0 331 200 27 0 chrX 95881869 95881944 -81092196 - MIR SINE MIR -10 252 176 643 261 113 19 chrX 95882331 95882588 -81091552 + L2 LINE L2 3033 3313 0 341 308 103 8 chrX 95882779 95882896 -81091244 - MIR3 SINE MIR -16 192 65 1231 288 126 15 chrX 95884921 95885397 -81088743 - MLT1G1 LTR MaLR -6 589 61 591 276 43 102 chrX 95886057 95886448 -81087692 + L2 LINE L2 2903 3270 -2 25 0 0 0 chrX 95887294 95887319 -81086821 + AT_rich Low_complexity Low_complexity 1 25 0 250 333 163 7 chrX 95887549 95887702 -81086438 + MIR SINE MIR 76 252 -10 254 240 0 40 chrX 95887839 95887889 -81086251 - L2 LINE L2 -13 3259 3212 25 0 0 0 chrX 95889016 95889041 -81085099 + AT_rich Low_complexity Low_complexity 1 25 0 200 256 0 0 chrX 95889143 95889186 -81084954 + L2 LINE L2 3271 3313 0 273 196 0 0 chrX 95889196 95889247 -81084893 + L2 LINE L2 3263 3313 0 291 160 20 0 chrX 95891260 95891310 -81082830 - L2 LINE L2 -6 3266 3216 26 30 0 0 chrX 95893065 95893098 -81081042 + AT_rich Low_complexity Low_complexity 1 33 0 740 179 64 35 chrX 95894276 95894449 -81079691 + MER5B DNA MER1_type 1 178 0 22 0 0 0 chrX 95894476 95894498 -81079642 + AT_rich Low_complexity Low_complexity 1 22 0 1862 167 0 7 chrX 95894851 95895150 -81078990 - AluJo SINE Alu -15 297 1 401 198 12 12 chrX 95895550 95895631 -81078509 - MER94 DNA DNA -53 81 1 180 222 22 22 chrX 95897415 95897460 -81076680 - L2 LINE L2 0 3313 3269 281 350 106 26 chrX 95897613 95897908 -81076232 - L2 LINE L2 -185 3087 2773 21 57 0 0 chrX 95898603 95898638 -81075502 + AT_rich Low_complexity Low_complexity 1 35 0 368 264 99 0 chrX 95898834 95898955 -81075185 + MER94 DNA DNA 1 133 -1 29 0 0 0 chrX 95898988 95899017 -81075123 + AT_rich Low_complexity Low_complexity 1 29 0 3920 208 20 21 chrX 95899017 95900014 -81074126 - L1ME1 LINE L1 -18 6148 5147 281 256 0 0 chrX 95900015 95900097 -81074043 - L1ME1 LINE L1 -1055 5091 5010 1898 114 25 18 chrX 95900146 95900336 -81073804 - AluSx SINE Alu 0 326 132 186 103 0 0 chrX 95900336 95900365 -81073775 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1898 114 25 18 chrX 95900365 95900496 -81073644 - AluSx SINE Alu -194 132 3 22 0 0 0 chrX 95900501 95900523 -81073617 + AT_rich Low_complexity Low_complexity 1 22 0 1343 310 73 31 chrX 95900652 95901942 -81072198 - L1ME1 LINE L1 -2127 4019 2676 1927 138 0 17 chrX 95902101 95902397 -81071743 + AluSx SINE Alu 1 291 -21 3527 18 16 3 chrX 95902402 95902990 -81071150 + L1P2 LINE L1 4967 5558 -597 414 243 14 81 chrX 95903458 95903606 -81070534 + MIR SINE MIR 59 196 -66 1643 171 31 11 chrX 95903752 95904103 -81070037 - L1MC3 LINE L1 -6 7779 7422 * 5080 149 37 14 chrX 95904089 95904595 -81069545 - L1MB3 LINE L1 -8 6175 5682 459 0 0 0 chrX 95904595 95904646 -81069494 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1704 131 0 19 chrX 95904646 95904905 -81069235 - AluSx SINE Alu -28 284 31 5080 149 37 14 chrX 95904905 95905298 -81068842 - L1MB3 LINE L1 -500 5683 5255 28 29 0 0 chrX 95905441 95905476 -81068664 + AT_rich Low_complexity Low_complexity 1 35 0 1001 132 0 0 chrX 95905480 95905616 -81068524 + AluJb SINE Alu 150 285 -27 219 36 0 0 chrX 95905618 95905646 -81068494 + (TA)n Simple_repeat Simple_repeat 2 29 0 443 157 0 0 chrX 95905646 95905716 -81068424 - L1M3 LINE L1 -448 5723 5654 36 70 0 0 chrX 95905716 95905787 -81068353 + AT_rich Low_complexity Low_complexity 1 71 0 550 304 70 15 chrX 95906625 95906826 -81067314 - MIR SINE MIR -35 227 16 22 0 0 0 chrX 95907691 95907713 -81066427 + AT_rich Low_complexity Low_complexity 1 22 0 576 316 101 9 chrX 95908223 95908441 -81065699 - MIR SINE MIR -10 252 15 1131 258 100 48 chrX 95908450 95908866 -81065274 - MLT1J LTR MaLR -2 475 77 2004 199 0 3 chrX 95908866 95909232 -81064908 + MLT1A1 LTR MaLR 1 365 0 1131 258 100 48 chrX 95909232 95909304 -81064836 - MLT1J LTR MaLR -400 77 10 288 290 122 0 chrX 95911525 95911632 -81062508 + MIR SINE MIR 122 241 -21 182 360 0 0 chrX 95911991 95912041 -81062099 - L2 LINE L2 -18 3295 3246 1691 128 36 56 chrX 95912070 95912374 -81061766 - AluJb SINE Alu -14 298 1 298 248 231 50 chrX 95913503 95913624 -81060516 - MIR SINE MIR -58 204 62 321 303 40 51 chrX 95913693 95913868 -81060272 - L2 LINE L2 -5 3308 3136 576 0 0 0 chrX 95913972 95914036 -81060104 + (TC)n Simple_repeat Simple_repeat 1 64 0 805 235 125 26 chrX 95914114 95914378 -81059762 - L2 LINE L2 -1 3312 3023 529 330 62 34 chrX 95914575 95914762 -81059378 - L2 LINE L2 -2395 919 739 321 266 32 85 chrX 95914762 95914950 -81059190 - MER5B DNA MER1_type 0 178 1 529 330 62 34 chrX 95914950 95915117 -81059023 - L2 LINE L2 -2575 739 555 467 293 78 16 chrX 95915906 95916097 -81058043 + MIR SINE MIR 46 248 -14 1708 118 19 4 chrX 95916198 95916460 -81057680 - L1PA16 LINE L1 -9 6157 5892 22 56 0 0 chrX 95917177 95917213 -81056927 + AT_rich Low_complexity Low_complexity 1 36 0 444 186 37 93 chrX 95917664 95917825 -81056315 - L1ME4a LINE L1 -2 6119 5968 741 256 0 0 chrX 95917988 95918144 -81055996 - MIR SINE MIR -13 249 94 290 107 18 0 chrX 95918213 95918269 -81055871 + (CCCTG)n Simple_repeat Simple_repeat 2 58 0 302 256 12 0 chrX 95918798 95918880 -81055260 + MIR3 SINE MIR 75 157 -51 240 212 20 0 chrX 95919166 95919227 -81054913 - MIR SINE MIR -62 146 91 295 325 32 32 chrX 95919288 95919411 -81054729 - MIR3 SINE MIR -54 154 32 363 336 0 49 chrX 95920334 95920477 -81053663 + L2 LINE L2 3137 3272 0 198 311 106 43 chrX 95920787 95920948 -81053192 - MIR SINE MIR -78 184 14 364 324 53 57 chrX 95923127 95923284 -81050856 + MIR3 SINE MIR 31 184 -48 2113 112 0 7 chrX 95923803 95924128 -81050012 - AluSq SINE Alu 0 324 2 637 220 13 0 chrX 95924504 95924654 -81049486 - MER103 DNA DNA -2 164 13 639 308 36 5 chrX 95924944 95925168 -81048972 - MIR SINE MIR -11 251 21 2375 57 0 27 chrX 95925433 95925731 -81048409 + AluY SINE Alu 1 290 -21 922 234 58 5 chrX 95926023 95926228 -81047912 - MIR SINE MIR 0 262 47 714 189 63 84 chrX 95926405 95926595 -81047545 - MER5A DNA MER1_type -3 186 1 1210 143 43 0 chrX 95926744 95926975 -81047165 - L1MA7 LINE L1 -2 6289 6049 540 279 100 11 chrX 95927209 95927399 -81046741 + MIR SINE MIR 2 208 -54 2424 103 0 0 chrX 95929119 95929431 -81044709 + AluSx SINE Alu 1 312 0 27 0 0 0 chrX 95929538 95929565 -81044575 + AT_rich Low_complexity Low_complexity 1 27 0 241 231 140 35 chrX 95929635 95929778 -81044362 - L1ME LINE L1 -212 5909 5752 223 356 42 17 chrX 95931807 95931925 -81042215 - L2 LINE L2 -14 3299 3179 826 42 127 0 chrX 95932280 95932398 -81041742 - MER85 DNA T2_type -6 133 1 252 367 67 27 chrX 95932410 95932560 -81041580 + L2 LINE L2 3117 3272 0 673 299 94 8 chrX 95932769 95933003 -81041137 - MIR SINE MIR -1 261 8 849 208 6 17 chrX 95933003 95933181 -81040959 - MER5B DNA MER1_type -1 177 2 326 302 0 0 chrX 95933872 95933978 -81040162 + MIR SINE MIR 148 253 -9 343 353 44 0 chrX 95934927 95935063 -81039077 - MIR SINE MIR -120 142 1 270 194 32 65 chrX 95935127 95935189 -81038951 - L3 LINE CR1 -13 1564 1505 329 231 77 69 chrX 95935359 95935489 -81038651 - MIR SINE MIR -87 175 45 324 279 147 16 chrX 95936007 95936136 -81038004 - MIR3 SINE MIR -31 177 32 245 259 0 0 chrX 95936257 95936311 -81037829 + MLT1I LTR MaLR 81 134 -275 3041 19 0 3 chrX 95936311 95936911 -81037229 - L1P1 LINE L1 -530 5625 5027 4916 33 0 0 chrX 95936911 95937483 -81036657 + L1PA3 LINE L1 5579 6155 0 768 266 85 30 chrX 95937490 95937761 -81036379 + MLT1I LTR MaLR 124 409 0 512 262 29 17 chrX 95937765 95937937 -81036203 + Charlie8 DNA MER1_type 55 228 -2189 247 250 0 0 chrX 95938037 95938089 -81036051 + Charlie8 DNA MER1_type 1363 1414 -1003 26320 127 14 23 chrX 95938426 95941284 -81032856 + L1PA8 LINE L1 10 2892 -3595 2222 99 0 48 chrX 95941284 95941598 -81032542 + AluSp SINE Alu 1 299 -14 26320 127 14 23 chrX 95941598 95943125 -81031015 + L1PA8 LINE L1 2892 4431 -2056 2202 126 3 0 chrX 95943125 95943434 -81030706 + AluSx SINE Alu 1 310 -2 26320 127 14 23 chrX 95943434 95945555 -81028585 + L1PA8 LINE L1 4431 6487 0 3488 104 10 0 chrX 95945707 95946225 -81027915 - L1MA2 LINE L1 0 6304 5782 1187 180 0 10 chrX 95948924 95949140 -81025000 + AluJo SINE Alu 93 306 0 23 33 0 0 chrX 95949289 95949319 -81024821 + AT_rich Low_complexity Low_complexity 1 30 0 30 45 0 0 chrX 95949968 95950012 -81024128 + AT_rich Low_complexity Low_complexity 1 44 0 1097 248 0 4 chrX 95950717 95950947 -81023193 + MIR SINE MIR 29 257 -5 347 311 60 13 chrX 95951473 95951624 -81022516 - MIR SINE MIR -55 207 50 511 290 98 40 chrX 95952233 95952457 -81021683 + MIR SINE MIR 20 256 -6 14068 141 14 109 chrX 95952689 95956140 -81018000 + L1P LINE L1 11 3134 -3012 482 246 120 6 chrX 95956361 95956536 -81017604 + MLT1H LTR MaLR 346 595 0 7603 100 7 2 chrX 95957355 95958529 -81015611 + L1PA7 LINE L1 3116 4295 -1851 5476 25 3 0 chrX 95958529 95959170 -81014970 + L1PA2 LINE L1 5510 6152 -3 * 7231 94 6 13 chrX 95959166 95961033 -81013107 + L1PA7 LINE L1 4303 6154 0 380 355 45 7 chrX 95961423 95961647 -81012493 - MIR SINE MIR -31 231 2 523 193 0 0 chrX 95962945 95963033 -81011107 - Tigger5 DNA MER2_type -2235 88 1 477 153 24 0 chrX 95963043 95963128 -81011012 + Tigger5 DNA MER2_type 2237 2323 0 280 191 0 0 chrX 95963320 95963367 -81010773 - MIR SINE MIR -13 249 203 299 330 107 21 chrX 95963388 95963621 -81010519 + L2 LINE L2 1564 1816 -1498 873 311 91 27 chrX 95963622 95963909 -81010231 + L2 LINE L2 1967 2299 -1015 2358 48 41 0 chrX 95963909 95964199 -81009941 - AluY SINE Alu -9 302 1 873 311 91 27 chrX 95964199 95964397 -81009743 + L2 LINE L2 2299 2483 -831 940 258 64 4 chrX 95964462 95964695 -81009445 - MIR SINE MIR -14 248 2 4005 112 11 3 chrX 95964752 95965368 -81008772 + MER39B LTR ERV1 1 621 -32 359 264 136 39 chrX 95965426 95965581 -81008559 - MIR SINE MIR -89 173 4 1283 179 12 4 chrX 95966846 95967092 -81007048 + MLT1D LTR MaLR 258 505 0 211 363 37 44 chrX 95967732 95967867 -81006273 - L2 LINE L2 -2 3270 3137 185 212 61 61 chrX 95968701 95968767 -81005373 - L2 LINE L2 -1087 2227 2162 479 321 45 32 chrX 95968881 95969127 -81005013 + L2 LINE L2 2812 3060 -212 11463 77 3 6 chrX 96071114 96072584 -80901556 + Harlequin LTR ERV1 3489 4954 -3445 517 92 23 119 chrX 96072577 96072837 -80901303 + Harlequin LTR ERV1 840 1074 -5822 * 10182 76 6 12 chrX 96072836 96074223 -80899917 + Harlequin LTR ERV1 6470 7847 -552 39003 69 4 1 chrX 96074223 96080354 -80893786 - L1PA5 LINE L1 -5 6149 1 3895 98 2 0 chrX 96080354 96080913 -80893227 + Harlequin LTR ERV1 7840 8399 0 4574 88 83 2 chrX 96080913 96081549 -80892591 + LTR12 LTR ERV1 1 688 0 652 254 65 52 chrX 96081733 96082023 -80892117 - MLT1H1 LTR MaLR -298 292 1 22 0 0 0 chrX 96082857 96082879 -80891261 + AT_rich Low_complexity Low_complexity 1 22 0 583 189 60 27 chrX 96084541 96084726 -80889414 - HsTC2 DNA Tc2 -6 1892 1702 318 181 117 11 chrX 96084900 96084994 -80889146 - MLT1I LTR MaLR -25 384 281 * 700 259 43 68 chrX 96084980 96085305 -80888835 - MLT1H LTR MaLR -198 351 35 2554 49 0 3 chrX 96085619 96085926 -80888214 - AluY SINE Alu -1 310 5 783 269 66 31 chrX 96086094 96086321 -80887819 + MIR SINE MIR 21 255 -7 22 35 0 0 chrX 96087273 96087302 -80886838 + AT_rich Low_complexity Low_complexity 1 29 0 394 268 7 85 chrX 96087959 96087988 -80886152 - MIR SINE MIR -90 172 142 2166 136 0 3 chrX 96087988 96088298 -80885842 - AluSx SINE Alu -3 309 1 394 268 7 85 chrX 96088298 96088421 -80885719 - MIR SINE MIR -120 142 32 252 214 0 0 chrX 96088645 96088701 -80885439 + (TA)n Simple_repeat Simple_repeat 1 56 0 39529 41 23 8 chrX 96088721 96094255 -80879885 - L1PA2 LINE L1 0 6155 517 180 0 0 0 chrX 96094255 96094275 -80879865 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 39529 41 23 8 chrX 96094275 96094798 -80879342 - L1PA2 LINE L1 -5638 517 3 1524 85 0 0 chrX 96094801 96095000 -80879140 - L1PA7 LINE L1 -13 6141 5943 273 283 82 68 chrX 96095324 96095811 -80878329 + L1M4 LINE L1 3250 3743 -2403 659 323 162 6 chrX 96095828 96096193 -80877947 + L2 LINE L2 2434 2855 -459 7953 39 1 0 chrX 96096193 96097215 -80876925 - L1P LINE L1 -1020 5126 4104 652 195 126 55 chrX 96097233 96097382 -80876758 - MER65A-int LTR ERV1 -3309 3289 3152 378 0 0 0 chrX 96097382 96097424 -80876716 + (TA)n Simple_repeat Simple_repeat 1 42 0 652 195 126 55 chrX 96097424 96097763 -80876377 - MER65A-int LTR ERV1 -3446 3152 1546 24 32 0 0 chrX 96097784 96097815 -80876325 + AT_rich Low_complexity Low_complexity 1 31 0 11275 99 29 33 chrX 96097868 96097979 -80876161 - MER65A-int LTR ERV1 -2377 2494 2384 1593 142 0 125 chrX 96097979 96098316 -80875824 - AluJb SINE Alu -11 301 7 11275 99 29 33 chrX 96098316 96100648 -80873492 - MER65A-int LTR ERV1 -2487 2384 11 2156 151 122 7 chrX 96100648 96101058 -80873082 - MSTB2 LTR MaLR 0 457 1 2557 142 18 9 chrX 96101098 96101535 -80872605 - MER65A LTR ERV1 -4 441 1 1378 240 62 37 chrX 96101540 96101973 -80872167 - LTR16A1 LTR ERVL -13 444 1 191 210 48 81 chrX 96102068 96102130 -80872010 - L2 LINE L2 -8 3305 3246 2573 11 0 0 chrX 96102616 96102896 -80871244 + AluY SINE Alu 23 302 -9 558 302 33 58 chrX 96104536 96104654 -80869486 + MIR SINE MIR 8 118 -144 1673 156 56 17 chrX 96104654 96104942 -80869198 - AluJb SINE Alu -13 299 1 558 302 33 58 chrX 96104942 96105065 -80869075 + MIR SINE MIR 118 243 -19 341 260 39 39 chrX 96108419 96108546 -80865594 + MIR SINE MIR 100 226 -36 1167 140 53 18 chrX 96109509 96109737 -80864403 - MER46A DNA MER2_type 0 236 1 387 289 59 30 chrX 96110265 96110400 -80863740 - L2 LINE L2 -12 3260 3122 351 229 0 0 chrX 96110405 96110475 -80863665 + Tigger5 DNA MER2_type 2 71 -2252 240 226 57 0 chrX 96110492 96110545 -80863595 + Tigger5 DNA MER2_type 2268 2323 0 1230 208 112 10 chrX 96110582 96110894 -80863246 + MER2 DNA MER2_type 2 345 0 362 359 77 14 chrX 96110905 96111125 -80863015 - L2 LINE L2 -213 3059 2826 1875 181 31 3 chrX 96111303 96111662 -80862478 + MLT1B LTR MaLR 21 389 -1 22 0 0 0 chrX 96111702 96111724 -80862416 + AT_rich Low_complexity Low_complexity 1 22 0 242 342 32 32 chrX 96111785 96111943 -80862197 - L2 LINE L2 -539 2775 2618 1502 137 8 4 chrX 96113492 96113741 -80860399 + MLT2A2 LTR ERVL 2 251 -202 3275 81 13 15 chrX 96113741 96114210 -80859930 + HERVL-A2 LTR ERVL 1868 2335 -3319 1316 125 14 0 chrX 96114218 96114434 -80859706 + HERVL-A2 LTR ERVL 5436 5654 0 1949 170 37 31 chrX 96114434 96114980 -80859160 + MLT2A2 LTR ERVL 1 554 0 480 328 47 0 chrX 96115168 96115403 -80858737 - MER112 DNA MER1_type -3 257 12 895 271 9 0 chrX 96115403 96115621 -80858519 + MER58A DNA MER1_type 3 222 -2 1756 76 0 9 chrX 96116010 96116234 -80857906 + AluY SINE Alu 84 305 -6 551 301 65 45 chrX 96116515 96116824 -80857316 - L2 LINE L2 -433 2881 2567 286 348 204 0 chrX 96116890 96117091 -80857049 - L2 LINE L2 -454 2860 2619 957 138 37 41 chrX 96118185 96118431 -80855709 - L1MA7 LINE L1 0 6291 6047 1068 58 0 0 chrX 96118531 96118670 -80855470 - L1PA4 LINE L1 -1 6154 6016 439 234 28 0 chrX 96119135 96119242 -80854898 - MIR SINE MIR 0 262 153 602 214 200 29 chrX 96119362 96119572 -80854568 - MIR SINE MIR 0 262 17 304 289 12 0 chrX 96120397 96120480 -80853660 + MIR3 SINE MIR 108 191 -17 240 314 124 9 chrX 96120855 96120960 -80853180 + L2 LINE L2 3186 3302 -11 327 328 78 22 chrX 96121008 96121188 -80852952 + L1MEd LINE L1 12 201 -5918 668 174 27 54 chrX 96121266 96121470 -80852670 - MER69 DNA AcHobo 0 2526 1 933 207 217 30 chrX 96122050 96122354 -80851786 - MLT1A1 LTR MaLR 0 365 5 872 275 98 14 chrX 96122407 96122753 -80851387 - MLT1I LTR MaLR -16 393 19 342 0 0 0 chrX 96123253 96123291 -80850849 + (TC)n Simple_repeat Simple_repeat 2 39 0 338 268 101 36 chrX 96124274 96124412 -80849728 - L2 LINE L2 -20 3293 3147 755 228 22 137 chrX 96124576 96124940 -80849200 + L2 LINE L2 2952 3273 -40 252 0 0 0 chrX 96125692 96125720 -80848420 + (TTA)n Simple_repeat Simple_repeat 3 30 0 5507 25 0 0 chrX 96125720 96126355 -80847785 - L1PA3 LINE L1 -18 6137 5503 1007 24 0 0 chrX 96126355 96126480 -80847660 + L1P LINE L1 3576 3700 -2446 690 268 0 6 chrX 96127282 96127461 -80846679 - MIR SINE MIR 0 262 85 22 0 0 0 chrX 96130561 96130583 -80843557 + AT_rich Low_complexity Low_complexity 1 22 0 5621 51 7 3 chrX 96131432 96132117 -80842023 + LTR12 LTR ERV1 1 688 0 19176 85 12 10 chrX 96132117 96135723 -80838417 + HERV9 LTR ERV1 1 3541 -4858 621 97 51 126 chrX 96185731 96185906 -80788234 - L1MA7 LINE L1 0 6291 6130 218 209 0 0 chrX 96185915 96185958 -80788182 + (TATG)n Simple_repeat Simple_repeat 2 44 0 769 325 115 38 chrX 96186089 96186778 -80787362 - L2 LINE L2 -774 2540 1799 198 260 0 20 chrX 96186795 96186845 -80787295 + L2 LINE L2 3261 3309 -4 912 161 0 7 chrX 96187465 96187614 -80786526 - LTR26E LTR ERV1 -474 148 1 915 171 57 71 chrX 96187906 96188116 -80786024 - MSTA LTR MaLR 0 428 222 193 363 143 0 chrX 96189650 96189741 -80784399 - MIR SINE MIR -69 139 36 640 193 0 0 chrX 96190017 96190136 -80784004 - L1 LINE L1 -894 6671 6553 * 1464 166 0 0 chrX 96190135 96190364 -80783776 - L1 LINE L1 -6590 975 747 1439 169 54 4 chrX 96190465 96190725 -80783415 - L1 LINE L1 -7155 410 138 816 242 57 25 chrX 96190726 96190981 -80783159 - HUERS-P1 LTR ERV1 -4787 1159 10 315 316 89 24 chrX 96191479 96191647 -80782493 - HUERS-P1 LTR ERV1 -6067 196 18 3322 178 44 7 chrX 96191673 96192268 -80781872 - LTR26E LTR ERV1 -5 617 1 541 239 34 24 chrX 96193755 96193964 -80780176 - L1MC4 LINE L1 -142 7900 7690 423 169 0 0 chrX 96194274 96194339 -80779801 + AluJ/FLAM SINE Alu 5 69 -243 325 109 31 47 chrX 96194687 96194751 -80779389 - MSTA LTR MaLR -358 70 8 962 207 0 44 chrX 96194757 96194960 -80779180 + AluJo SINE Alu 93 286 -26 499 69 75 12 chrX 96194977 96195137 -80779003 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 1581 268 24 15 chrX 96195417 96195873 -80778267 - L1MC4a LINE L1 -1005 6803 6344 777 240 5 25 chrX 96195874 96196078 -80778062 - L1ME2 LINE L1 -9 6155 5956 824 101 0 0 chrX 96197110 96197219 -80776921 + AluSg/x SINE Alu 140 248 -64 2344 259 60 18 chrX 96197447 96198387 -80775753 - L1MEc LINE L1 -2431 3784 2806 1252 249 81 28 chrX 96198399 96199116 -80775024 - L1MEc LINE L1 -3563 2652 1938 378 159 0 0 chrX 96199125 96199194 -80774946 + (CA)n Simple_repeat Simple_repeat 2 70 0 30 69 0 0 chrX 96199194 96199252 -80774888 + AT_rich Low_complexity Low_complexity 1 58 0 227 302 29 50 chrX 96201855 96201994 -80772146 - L2 LINE L2 -460 2854 2719 419 285 61 24 chrX 96204414 96204579 -80769561 - MIR SINE MIR -87 175 5 463 340 56 19 chrX 96204938 96205153 -80768987 - MIR SINE MIR -28 234 12 2408 85 0 0 chrX 96205224 96205531 -80768609 - AluSc SINE Alu -2 307 1 6928 61 8 0 chrX 96205556 96207186 -80766954 + L1PA7 LINE L1 4516 6151 -3 2301 133 6 0 chrX 96207239 96207584 -80766556 + MER7A DNA MER2_type 1 345 -1 213 132 0 0 chrX 96207585 96207623 -80766517 + (TTA)n Simple_repeat Simple_repeat 1 38 0 269 146 42 0 chrX 96208354 96208402 -80765738 + L2 LINE L2 3223 3272 0 200 365 52 17 chrX 96209078 96209193 -80764947 - L2 LINE L2 -215 3057 2939 934 289 142 9 chrX 96209205 96209544 -80764596 - L2 LINE L2 -710 2604 2221 352 322 98 0 chrX 96209854 96209997 -80764143 - MIR SINE MIR -30 232 76 243 220 0 0 chrX 96210337 96210387 -80763753 + MIR SINE MIR 213 262 0 524 232 76 0 chrX 96210419 96210555 -80763585 - MIR SINE MIR -64 144 37 209 281 0 18 chrX 96210918 96210975 -80763165 - L2 LINE L2 -8 3264 3209 23 0 0 0 chrX 96211167 96211190 -80762950 + AT_rich Low_complexity Low_complexity 1 23 0 431 289 14 49 chrX 96211260 96211402 -80762738 - MIR3 SINE MIR -14 194 58 428 314 0 8 chrX 96211941 96212059 -80762081 + MIR SINE MIR 20 136 -126 201 178 0 0 chrX 96212163 96212208 -80761932 + (CTA)n Simple_repeat Simple_repeat 1 45 0 369 296 26 9 chrX 96212516 96212631 -80761509 + L2 LINE L2 3197 3313 0 926 300 79 47 chrX 96212689 96213556 -80760584 - L2 LINE L2 0 3313 2406 366 322 55 14 chrX 96213576 96213722 -80760418 - L2 LINE L2 -1 3312 3161 383 23 0 0 chrX 96214238 96214282 -80759858 - L1P LINE L1 -1182 4964 4921 22 70 0 0 chrX 96214297 96214340 -80759800 + AT_rich Low_complexity Low_complexity 1 43 0 225 183 171 24 chrX 96214351 96214433 -80759707 - L1MA10 LINE L1 -3 6331 6238 260 197 47 0 chrX 96214458 96214527 -80759613 - L1MB5 LINE L1 -155 6011 5936 3081 237 100 11 chrX 96214919 96215800 -80758340 - L2 LINE L2 -407 2907 1949 454 336 48 83 chrX 96215915 96216204 -80757936 - L2 LINE L2 -1 3271 2993 460 242 11 0 chrX 96217485 96217575 -80756565 + Charlie1 DNA MER1_type 2 92 -2669 1294 202 0 55 chrX 96217575 96217828 -80756312 - MER8 DNA MER2_type 0 239 1 * 2929 175 26 92 chrX 96217828 96218586 -80755554 + Charlie1 DNA MER1_type 2014 2718 -43 2287 86 3 20 chrX 96218586 96218890 -80755250 + AluSg SINE Alu 1 299 -11 2929 175 26 92 chrX 96218890 96218932 -80755208 + Charlie1 DNA MER1_type 2718 2761 0 227 196 43 0 chrX 96219100 96219146 -80754994 - L1P4 LINE L1 -335 5828 5781 656 277 73 20 chrX 96219148 96219448 -80754692 - L1MB5 LINE L1 -2165 5643 5328 191 341 0 0 chrX 96220422 96220466 -80753674 - L2 LINE L2 -20 3252 3209 312 286 83 0 chrX 96220516 96220600 -80753540 - MIR SINE MIR -15 247 157 252 306 41 47 chrX 96220858 96221028 -80753112 - L2 LINE L2 -460 2854 2686 525 273 35 58 chrX 96221269 96221529 -80752611 - MER112 DNA MER1_type -6 254 1 232 368 30 18 chrX 96221622 96221788 -80752352 + L2 LINE L2 2572 2739 -575 214 312 166 6 chrX 96222143 96222300 -80751840 + L2 LINE L2 3131 3312 -1 483 275 35 85 chrX 96222413 96222613 -80751527 + MIR3 SINE MIR 3 192 -16 2700 263 113 62 chrX 96222640 96223135 -80751005 - L2 LINE L2 -3 3310 2842 1776 118 30 92 chrX 96223135 96223535 -80750605 - THE1C LTR MaLR 0 375 1 2700 263 113 62 chrX 96223535 96223734 -80750406 - L2 LINE L2 -471 2842 2655 1348 122 31 75 chrX 96223734 96224028 -80750112 - L1MA7 LINE L1 0 6291 6011 2700 263 113 62 chrX 96224028 96224869 -80749271 - L2 LINE L2 -658 2655 1699 497 125 34 0 chrX 96224907 96224995 -80749145 - L1MA10 LINE L1 -2 6332 6242 3464 166 38 5 chrX 96225015 96225617 -80748523 - LTR26E LTR ERV1 0 622 1 2285 156 40 35 chrX 96225909 96226332 -80747808 - MSTA LTR MaLR 0 428 4 318 111 0 0 chrX 96226411 96226456 -80747684 - LTR29 LTR ERV1 -577 45 1 1666 149 32 0 chrX 96226693 96227008 -80747132 - HUERS-P1 LTR ERV1 -588 5743 5419 6369 118 50 4 chrX 96227019 96228139 -80746001 - L1MA2 LINE L1 0 6304 5134 4775 175 24 4 chrX 96228138 96228959 -80745181 - L1M1 LINE L1 -6590 975 138 * 816 246 54 22 chrX 96228960 96229215 -80744925 - HUERS-P1 LTR ERV1 -4787 1159 10 315 316 89 24 chrX 96229713 96229881 -80744259 - HUERS-P1 LTR ERV1 -6067 196 18 3322 178 44 7 chrX 96229907 96230502 -80743638 - LTR26E LTR ERV1 -5 617 1 247 176 20 0 chrX 96230502 96230553 -80743587 - L1MA10 LINE L1 -106 6228 6177 834 141 0 40 chrX 96230554 96230569 -80743571 + L1MB1 LINE L1 6013 6027 -162 2225 145 94 5 chrX 96230569 96230962 -80743178 - MSTA LTR MaLR 0 428 1 834 141 0 40 chrX 96230962 96231095 -80743045 + L1MB1 LINE L1 6027 6155 -34 183 80 0 0 chrX 96231095 96231120 -80743020 + (CA)n Simple_repeat Simple_repeat 1 25 0 283 339 16 8 chrX 96231184 96231308 -80742832 + CT-rich Low_complexity Low_complexity 2 126 0 32 26 0 0 chrX 96231503 96231542 -80742598 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chrX 96231680 96231704 -80742436 + AT_rich Low_complexity Low_complexity 1 24 0 1395 252 47 29 chrX 96231989 96232504 -80741636 - L1MC4 LINE L1 -142 7900 7377 521 213 0 0 chrX 96232508 96232602 -80741538 + AluJo SINE Alu 5 98 -214 1495 158 66 105 chrX 96232604 96232985 -80741155 - THE1C LTR MaLR -2 373 8 962 207 0 44 chrX 96232991 96233194 -80740946 + AluJo SINE Alu 93 286 -26 511 73 73 12 chrX 96233206 96233371 -80740769 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 212 71 86 14 chrX 96233380 96233450 -80740690 + (TA)n Simple_repeat Simple_repeat 1 75 0 2089 272 30 12 chrX 96233504 96234107 -80740033 - L1MC4a LINE L1 -851 6957 6344 * 2473 218 93 63 chrX 96234103 96234773 -80739367 - L1ME3 LINE L1 -2 6229 5580 230 0 0 32 chrX 96234773 96234804 -80739336 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2132 122 0 7 chrX 96234804 96235092 -80739048 - AluSq SINE Alu -27 286 1 2473 218 93 63 chrX 96235092 96235205 -80738935 - L1ME3 LINE L1 -651 5580 5472 2383 91 0 0 chrX 96235205 96235501 -80738639 + AluSx SINE Alu 1 296 -16 2473 218 93 63 chrX 96235501 96235615 -80738525 - L1ME3 LINE L1 -759 5472 5288 2426 259 58 18 chrX 96235659 96236621 -80737519 - L1ME3 LINE L1 -2409 3806 2806 1252 248 95 25 chrX 96236633 96237350 -80736790 - L1ME3 LINE L1 -3563 2652 1938 378 159 0 0 chrX 96237359 96237428 -80736712 + (CA)n Simple_repeat Simple_repeat 2 70 0 30 69 0 0 chrX 96237428 96237486 -80736654 + AT_rich Low_complexity Low_complexity 1 58 0 320 176 94 0 chrX 96238421 96238506 -80735634 - L1MA8 LINE L1 -66 6225 6133 618 161 8 0 chrX 96238507 96238625 -80735515 + L1MA8 LINE L1 6171 6289 -2 873 167 0 0 chrX 96241143 96241293 -80732847 - L1MB5 LINE L1 -6 6168 6019 1561 80 88 9 chrX 96241294 96241331 -80732809 - MLT2A1 LTR ERVL -2 442 409 213 39 0 0 chrX 96241331 96241357 -80732783 + (TA)n Simple_repeat Simple_repeat 2 27 0 1561 80 88 9 chrX 96241357 96241545 -80732595 - MLT2A1 LTR ERVL -35 409 199 382 188 0 0 chrX 96241570 96241634 -80732506 - L1MB5 LINE L1 -154 6020 5957 3132 136 4 9 chrX 96241759 96242216 -80731924 - MER57A-int LTR ERV1 -7082 455 1 2351 147 18 0 chrX 96242216 96242611 -80731529 - MER57A LTR ERV1 0 403 2 227 191 0 0 chrX 96243310 96243352 -80730788 + tRNA-Ile-ATT tRNA tRNA 6 47 -30 498 229 9 9 chrX 96243476 96243585 -80730555 - L2 LINE L2 -2 3311 3203 3157 149 2 2 chrX 96243816 96244311 -80729829 - LOR1a LTR ERV1 0 497 3 300 272 168 24 chrX 96244686 96244811 -80729329 - MIR SINE MIR -110 152 10 317 130 0 0 chrX 96244957 96245003 -80729137 - MIR SINE MIR -72 136 91 435 106 0 0 chrX 96245077 96245143 -80728997 + (TG)n Simple_repeat Simple_repeat 2 67 0 208 293 27 0 chrX 96245324 96245399 -80728741 + (TA)n Simple_repeat Simple_repeat 2 78 0 268 260 91 83 chrX 96245404 96245658 -80728482 - L1MC4a LINE L1 -1866 5942 5687 397 284 70 47 chrX 96245689 96246037 -80728103 + L1P LINE L1 4078 4432 -1714 7023 108 12 1 chrX 96246072 96247138 -80727002 + L1MA2 LINE L1 5226 6303 -1 3889 191 17 34 chrX 96247138 96248058 -80726082 + L1MC2 LINE L1 5423 6335 -9 524 293 72 51 chrX 96248210 96248585 -80725555 + L1M4 LINE L1 4624 5006 -1140 248 339 71 4 chrX 96249146 96249277 -80724863 + MIR SINE MIR 17 160 -66 1925 195 67 14 chrX 96249437 96249883 -80724257 - L1ME1 LINE L1 -6 6160 5691 220 377 39 32 chrX 96250104 96250258 -80723882 + L2 LINE L2 2656 2810 -504 198 352 34 0 chrX 96250230 96250318 -80723822 - MIR SINE MIR -14 248 158 * 197 301 151 41 chrX 96250445 96250591 -80723549 + L2 LINE L2 2907 3068 -204 2035 179 14 7 chrX 96250624 96251055 -80723085 - L1MCa LINE L1 -5118 1308 875 * 20804 153 23 19 chrX 96251050 96253820 -80720320 - L1PA14 LINE L1 0 7599 4840 2074 129 3 3 chrX 96253820 96254123 -80720017 - AluSx SINE Alu -9 303 1 20804 153 23 19 chrX 96254123 96258927 -80715213 - L1PA14 LINE L1 -2759 4840 2 2262 188 43 22 chrX 96258925 96258967 -80715173 - L1MCa LINE L1 -5014 893 853 * 300 27 0 0 chrX 96258967 96259004 -80715136 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2262 188 43 22 chrX 96259004 96259549 -80714591 - L1MCa LINE L1 -5054 853 346 973 178 23 32 chrX 96259566 96259785 -80714355 - L1MCa LINE L1 -6189 237 21 539 321 79 33 chrX 96259938 96260178 -80713962 - MIR SINE MIR -2 260 10 2374 84 3 0 chrX 96260381 96260679 -80713461 - AluSp SINE Alu -14 299 1 2327 105 47 8 chrX 96261534 96261895 -80712245 + THE1C LTR MaLR 1 375 0 255 175 0 0 chrX 96263276 96263333 -80710807 + (CA)n Simple_repeat Simple_repeat 2 58 0 2333 98 0 3 chrX 96263540 96263835 -80710305 - AluSx SINE Alu -17 295 2 1097 171 66 83 chrX 96265792 96265980 -80708160 + L1MA9 LINE L1 5920 6101 -211 1955 128 3 24 chrX 96265980 96266278 -80707862 + AluSx SINE Alu 7 298 -14 1097 171 66 83 chrX 96266278 96266451 -80707689 + L1MA9 LINE L1 6101 6275 -37 33 43 0 0 chrX 96266877 96266924 -80707216 + AT_rich Low_complexity Low_complexity 1 47 0 339 268 71 121 chrX 96267521 96267719 -80706421 - MER5A DNA MER1_type 0 189 2 289 250 0 56 chrX 96267940 96268012 -80706128 - L2 LINE L2 0 3272 3205 3131 19 0 0 chrX 96269122 96269487 -80704653 - L1P LINE L1 -1581 4565 4201 2745 25 6 0 chrX 96269465 96269791 -80704349 + L1PA2 LINE L1 5828 6155 0 * 611 295 25 37 chrX 96270640 96270732 -80703408 - MIR SINE MIR -13 249 157 4242 85 50 28 chrX 96270732 96271369 -80702771 + MER39B LTR ERV1 1 651 -2 611 295 25 37 chrX 96271369 96271498 -80702642 - MIR SINE MIR -105 157 33 251 206 29 0 chrX 96272228 96272296 -80701844 + GA-rich Low_complexity Low_complexity 2 71 0 281 194 51 102 chrX 96272320 96272418 -80701722 + MER103 DNA DNA 29 121 -45 1997 155 0 0 chrX 96272426 96272717 -80701423 + AluSx SINE Alu 3 293 -19 254 313 122 0 chrX 96272942 96273073 -80701067 + L2 LINE L2 3154 3300 -13 298 368 17 0 chrX 96273251 96273368 -80700772 - MIR3 SINE MIR -88 120 2 2187 105 3 10 chrX 96273619 96273923 -80700217 + AluSp SINE Alu 1 302 -11 599 254 57 38 chrX 96273927 96274136 -80700004 - MER102b DNA MER1_type -12 329 117 687 308 158 37 chrX 96275133 96275425 -80698715 - L2 LINE L2 -650 2664 2409 2144 128 0 0 chrX 96275425 96275723 -80698417 + AluSx SINE Alu 1 298 -14 687 308 158 37 chrX 96275723 96275911 -80698229 - L2 LINE L2 -905 2409 2126 715 340 82 62 chrX 96276159 96277032 -80697108 - L2 LINE L2 -645 2669 1779 533 248 50 126 chrX 96278053 96278114 -80696026 - MIR SINE MIR -14 248 184 1939 216 49 39 chrX 96278114 96278222 -80695918 + LTR40a LTR ERVL 1 106 -413 2014 110 37 0 chrX 96278222 96278535 -80695605 - AluSx SINE Alu 0 323 1 1939 216 49 39 chrX 96278535 96278934 -80695206 + LTR40a LTR ERVL 106 515 -4 2067 130 6 19 chrX 96278943 96279259 -80694881 - AluSx SINE Alu 0 312 1 533 248 50 126 chrX 96279259 96279449 -80694691 - MIR SINE MIR -86 176 7 1331 108 0 36 chrX 96279574 96279796 -80694344 + L1PA6 LINE L1 5941 6154 0 233 191 0 0 chrX 96280157 96280199 -80693941 + L2 LINE L2 3225 3266 -6 325 196 43 0 chrX 96280400 96280492 -80693648 - L1MB3 LINE L1 -1 6182 6087 457 303 77 35 chrX 96281328 96281533 -80692607 + MIR SINE MIR 22 236 -26 2161 93 0 4 chrX 96282346 96282654 -80691486 - AluSg SINE Alu 0 307 1 268 149 53 0 chrX 96282991 96283085 -80691055 + (TA)n Simple_repeat Simple_repeat 1 99 0 238 356 0 11 chrX 96283144 96283234 -80690906 - MIR SINE MIR -18 244 156 459 182 0 0 chrX 96283319 96283396 -80690744 - MIR SINE MIR -110 152 76 306 299 72 0 chrX 96284098 96284195 -80689945 - L2 LINE L2 0 3272 3169 396 285 168 0 chrX 96284237 96284374 -80689766 - L2 LINE L2 -359 2955 2796 2225 63 18 3 chrX 96285564 96285849 -80688291 + AluY SINE Alu 1 289 -22 800 240 170 76 chrX 96287040 96287084 -80687056 - LTR33 LTR ERVL -19 502 464 2214 120 3 0 chrX 96287084 96287384 -80686756 + AluSx SINE Alu 1 301 -11 800 240 170 76 chrX 96287384 96287798 -80686342 - LTR33 LTR ERVL -57 464 1 684 270 65 30 chrX 96288288 96288518 -80685622 - MIR SINE MIR -13 249 12 22 35 0 0 chrX 96288908 96288937 -80685203 + AT_rich Low_complexity Low_complexity 1 29 0 562 282 154 9 chrX 96288958 96289185 -80684955 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 96289380 96289402 -80684738 + AT_rich Low_complexity Low_complexity 1 22 0 7188 40 25 0 chrX 96289402 96290389 -80683751 - L1PA5 LINE L1 0 6154 5161 2455 135 25 0 chrX 96290501 96290894 -80683246 - MER57A LTR ERV1 0 403 1 1850 88 4 15 chrX 96290894 96291156 -80682984 - MER57A-int LTR ERV1 0 7537 7279 699 89 22 67 chrX 96291156 96291291 -80682849 - LTR54B LTR ERV1 -367 131 3 10955 163 108 103 chrX 96291291 96293399 -80680741 - MER57A-int LTR ERV1 -391 7146 5051 495 102 10 91 chrX 96293399 96293630 -80680510 + AluSx SINE Alu 1 306 0 10955 163 108 103 chrX 96293630 96295212 -80678928 - MER57A-int LTR ERV1 -2486 5051 1819 290 26 26 0 chrX 96295248 96295287 -80678853 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 2184 101 7 0 chrX 96295379 96295665 -80678475 + AluSx SINE Alu 5 292 -20 1889 129 66 33 chrX 96295674 96296037 -80678103 + THE1C LTR MaLR 1 375 0 274 236 146 11 chrX 96296060 96296089 -80678051 - MER57A-int LTR ERV1 -4074 1049 1025 498 108 0 0 chrX 96296089 96296163 -80677977 + (TA)n Simple_repeat Simple_repeat 2 75 0 274 236 146 11 chrX 96296163 96296222 -80677918 - MER57A-int LTR ERV1 -4098 1025 949 291 184 0 105 chrX 96296254 96296330 -80677810 - HUERS-P1 LTR ERV1 -3365 2898 2831 2737 102 8 5 chrX 96296435 96296827 -80677313 - HUERS-P1 LTR ERV1 -6695 842 450 12257 178 18 21 chrX 96296827 96297545 -80676595 - L1 LINE L1 -1340 5868 5149 2247 128 0 0 chrX 96297545 96297857 -80676283 + AluSq SINE Alu 1 312 -1 12257 178 18 21 chrX 96297857 96299273 -80674867 - L1 LINE L1 -2059 5149 3743 2471 61 6 10 chrX 96299273 96299584 -80674556 + AluY SINE Alu 1 310 -1 12257 178 18 21 chrX 96299584 96300253 -80673887 - L1 LINE L1 -3465 3743 3073 5192 226 78 53 chrX 96300243 96301793 -80672347 - L1 LINE L1 -5621 1588 1 * 25 31 0 0 chrX 96301874 96301906 -80672234 + AT_rich Low_complexity Low_complexity 1 32 0 225 226 33 44 chrX 96301913 96302094 -80672046 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 498 199 108 0 chrX 96302200 96302386 -80671754 - MER20B DNA MER1_type -45 738 533 196 250 0 0 chrX 96302439 96302483 -80671657 - MIR SINE MIR -15 247 204 226 362 125 20 chrX 96303006 96303158 -80670982 - MIR3 SINE MIR -39 169 2 1049 182 169 43 chrX 96303395 96303697 -80670443 - MER2 DNA MER2_type -3 341 2 916 149 48 0 chrX 96304195 96304383 -80669757 + L1MA8 LINE L1 5307 5503 -788 280 256 203 21 chrX 96304651 96304932 -80669208 - L1ME4a LINE L1 -37 6084 5753 * 408 153 59 0 chrX 96304927 96305012 -80669128 + L1MA8 LINE L1 5472 5561 -739 2635 151 41 0 chrX 96305012 96305494 -80668646 + L1MA8 LINE L1 5782 6285 -6 246 319 76 38 chrX 96305509 96305747 -80668393 - L2 LINE L2 -685 2629 2383 1664 119 39 80 chrX 96306704 96307015 -80667125 - AluSx SINE Alu -8 304 7 729 318 4 29 chrX 96307419 96307664 -80666476 + MIR SINE MIR 10 248 -14 2069 124 3 0 chrX 96308700 96309005 -80665135 - AluSx SINE Alu 0 306 1 21 36 0 0 chrX 96310967 96310995 -80663145 + AT_rich Low_complexity Low_complexity 1 28 0 596 204 123 12 chrX 96312323 96312485 -80661655 + MIR SINE MIR 2 181 -27 297 250 0 0 chrX 96312826 96312886 -80661254 + MIR SINE MIR 159 218 -44 2397 100 0 0 chrX 96313490 96313799 -80660341 + AluSx SINE Alu 1 309 -3 185 317 0 33 chrX 96314099 96314159 -80659981 - L2 LINE L2 -61 3211 3154 182 289 0 0 chrX 96314294 96314339 -80659801 + L3 LINE CR1 1530 1574 -3 3554 105 39 8 chrX 96315248 96315781 -80658359 - L1PA15 LINE L1 -3 6162 5613 243 315 0 0 chrX 96315832 96315905 -80658235 - L1ME4a LINE L1 -2040 5768 5696 5394 171 53 21 chrX 96315924 96317011 -80657129 - L1MC3 LINE L1 -8 7777 6656 1989 132 4 0 chrX 96318120 96318400 -80655740 + AluSx SINE Alu 1 281 -31 237 33 0 0 chrX 96318400 96318430 -80655710 + (CA)n Simple_repeat Simple_repeat 1 30 0 233 258 16 16 chrX 96319906 96319968 -80654172 - Charlie8 DNA MER1_type -992 1425 1364 3870 239 50 100 chrX 96319999 96320906 -80653234 + L2 LINE L2 829 1765 -1549 580 179 0 0 chrX 96320906 96321018 -80653122 + L1MA10 LINE L1 6223 6334 0 3870 239 50 100 chrX 96321018 96321365 -80652775 + L2 LINE L2 1765 2127 -1187 286 259 136 0 chrX 96321367 96321448 -80652692 - Charlie8 DNA MER1_type -2235 182 91 466 281 0 0 chrX 96322178 96322274 -80651866 + MIR SINE MIR 18 113 -149 1282 281 61 79 chrX 96322487 96322797 -80651343 - L2 LINE L2 -105 3208 2894 2261 109 3 3 chrX 96322797 96323109 -80651031 + AluSx SINE Alu 1 312 0 1282 281 61 79 chrX 96323109 96323629 -80650511 - L2 LINE L2 -419 2894 2381 200 211 0 0 chrX 96323714 96323752 -80650388 + (CTA)n Simple_repeat Simple_repeat 1 38 0 568 262 107 0 chrX 96323792 96323960 -80650180 - MIR SINE MIR -76 186 1 225 265 0 0 chrX 96324672 96324721 -80649419 - L2 LINE L2 -2 3311 3263 185 326 41 20 chrX 96325520 96325618 -80648522 - L2 LINE L2 -303 2969 2870 997 176 0 57 chrX 96327927 96328137 -80646003 + MER20 DNA MER1_type 22 219 0 31735 112 15 56 chrX 96329167 96335602 -80638538 + L1PA8 LINE L1 2 6158 -14 235 252 9 90 chrX 96337286 96337397 -80636743 + (CGGGG)n Simple_repeat Simple_repeat 3 104 0 751 246 87 0 chrX 96338574 96338757 -80635383 - MER58A DNA MER1_type -4 220 22 547 247 98 64 chrX 96338920 96339268 -80634872 - MER57A LTR ERV1 -52 351 1 22 56 0 0 chrX 96339534 96339570 -80634570 + AT_rich Low_complexity Low_complexity 1 36 0 485 281 81 32 chrX 96339633 96339879 -80634261 - MIR SINE MIR -3 259 2 2144 235 114 16 chrX 96341439 96342000 -80632140 - MLT1E2 LTR MaLR 0 626 11 2142 114 7 3 chrX 96342899 96343206 -80630934 - AluSq SINE Alu -5 308 1 392 162 30 61 chrX 96343206 96343305 -80630835 - HAL1 LINE L1 -2132 375 280 751 238 39 6 chrX 96344145 96344326 -80629814 + MIR SINE MIR 76 262 0 23 54 0 0 chrX 96344972 96345009 -80629131 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chrX 96345149 96345174 -80628966 + AT_rich Low_complexity Low_complexity 1 25 0 297 271 7 104 chrX 96346125 96346195 -80627945 - L2 LINE L2 -287 3026 2976 3789 124 9 17 chrX 96346195 96346726 -80627414 + MER1A DNA MER1_type 1 527 0 297 271 7 104 chrX 96346726 96346799 -80627341 - L2 LINE L2 -337 2976 2897 25 83 0 0 chrX 96346906 96346966 -80627174 + AT_rich Low_complexity Low_complexity 1 60 0 6452 153 15 16 chrX 96347019 96348507 -80625633 - L1MA4A LINE L1 -8 6295 4810 196 343 69 10 chrX 96349249 96349351 -80624789 + L2 LINE L2 3190 3297 -16 1076 216 20 0 chrX 96350857 96351061 -80623079 - MER3 DNA MER1_type -1 208 1 1934 149 0 24 chrX 96351463 96351758 -80622382 + AluJo SINE Alu 1 288 -24 186 143 0 0 chrX 96352153 96352188 -80621952 + (A)n Simple_repeat Simple_repeat 1 35 0 1650 199 43 9 chrX 96353140 96353487 -80620653 - MLT1A1 LTR MaLR -2 363 5 490 274 45 82 chrX 96353991 96354283 -80619857 + MLT1J LTR MaLR 231 511 0 4053 37 2 0 chrX 96356307 96356764 -80617376 - L1PA4 LINE L1 0 6155 5698 4064 22 0 0 chrX 96356764 96357352 -80616788 + L1PA4 LINE L1 5132 5719 -436 1984 62 0 0 chrX 96357441 96357682 -80616458 + L1PA4 LINE L1 5915 6155 0 432 0 0 0 chrX 96357774 96357822 -80616318 + (TG)n Simple_repeat Simple_repeat 2 49 0 225 345 72 52 chrX 96358125 96358374 -80615766 + L2 LINE L2 2719 2972 -342 188 275 29 29 chrX 96358419 96358488 -80615652 + L2 LINE L2 3245 3313 0 339 295 54 27 chrX 96358646 96358758 -80615382 + L2 LINE L2 3155 3269 -3 2388 152 28 3 chrX 96359511 96359866 -80614274 + MLT1A1 LTR MaLR 1 364 -1 2985 135 27 47 chrX 96360234 96360321 -80613819 - L1MB8 LINE L1 -11 6167 6080 4401 170 37 17 chrX 96360321 96361087 -80613053 - LTR39 LTR ERV1 -2 781 1 2985 135 27 47 chrX 96361087 96361553 -80612587 - L1MB8 LINE L1 -98 6080 5625 2031 185 28 3 chrX 96362387 96362743 -80611397 + MLT1A1 LTR MaLR 1 365 0 611 211 54 14 chrX 96363052 96363199 -80610941 + MIR SINE MIR 52 204 -58 2123 112 0 7 chrX 96363229 96363553 -80610587 + AluSx SINE Alu 1 322 0 28 29 0 0 chrX 96363562 96363597 -80610543 + AT_rich Low_complexity Low_complexity 1 35 0 216 191 0 0 chrX 96365185 96365232 -80608908 + T-rich Low_complexity Low_complexity 1 47 0 2823 119 0 19 chrX 96365419 96365829 -80608311 + L1PB1 LINE L1 5742 6143 -8 1413 238 53 26 chrX 96366306 96366685 -80607455 + MSTD LTR MaLR 8 396 0 230 158 0 0 chrX 96366731 96366769 -80607371 - Alu SINE Alu -7 295 258 655 278 90 39 chrX 96366932 96367144 -80606996 - MIR SINE MIR -4 258 31 6872 86 5 10 chrX 96367144 96368021 -80606119 - MER4D LTR ERV1 0 872 1 655 278 90 39 chrX 96368021 96368042 -80606098 - MIR SINE MIR -231 31 13 251 350 75 33 chrX 96368629 96368843 -80605297 + L2 LINE L2 2438 2660 -654 233 371 19 41 chrX 96369248 96369515 -80604625 - L2 LINE L2 -584 2730 2470 403 294 49 14 chrX 96370624 96370767 -80603373 + MIR3 SINE MIR 44 191 -17 2294 48 3 60 chrX 96371741 96372055 -80602085 + AluY SINE Alu 3 298 -13 786 259 94 28 chrX 96372071 96372357 -80601783 + L2 LINE L2 2322 2626 -688 421 220 17 76 chrX 96372411 96372529 -80601611 + MIR3 SINE MIR 7 117 -91 600 333 39 0 chrX 96372698 96372905 -80601235 - MIR SINE MIR -8 254 40 279 258 113 32 chrX 96373541 96373665 -80600475 - MIR3 SINE MIR -24 184 51 1458 176 92 8 chrX 96374637 96374925 -80599215 + AluJo SINE Alu 1 310 0 227 291 18 0 chrX 96375833 96375888 -80598252 + MIR SINE MIR 75 130 -78 22 0 0 0 chrX 96376237 96376259 -80597881 + AT_rich Low_complexity Low_complexity 1 22 0 1001 188 7 25 chrX 96376373 96376677 -80597463 - MLT1A1 LTR MaLR 0 365 1 965 224 60 0 chrX 96376734 96376935 -80597205 + MER58A DNA MER1_type 12 224 0 458 252 18 18 chrX 96378002 96378113 -80596027 - MER81 DNA DNA -1 113 3 655 268 51 20 chrX 96378352 96378606 -80595534 + MIR SINE MIR 1 262 0 393 269 10 120 chrX 96378655 96378863 -80595277 + L2 LINE L2 2313 2497 -817 688 347 118 24 chrX 96378997 96379584 -80594556 + L2 LINE L2 2444 3079 -193 773 249 106 23 chrX 96379629 96379846 -80594294 + MIR SINE MIR 4 238 -24 399 233 78 0 chrX 96379896 96380012 -80594128 + L2 LINE L2 3188 3312 -1 664 304 27 14 chrX 96381487 96381726 -80592414 - MIR SINE MIR -4 258 16 217 234 106 32 chrX 96381958 96382052 -80592088 + MIR SINE MIR 95 195 -67 296 97 16 97 chrX 96382053 96382094 -80592046 - MLT2D LTR ERVL 0 414 378 351 0 0 0 chrX 96382094 96382133 -80592007 + (TG)n Simple_repeat Simple_repeat 1 39 0 296 97 16 97 chrX 96382133 96382153 -80591987 - MLT2D LTR ERVL -36 378 358 1541 196 96 36 chrX 96382188 96382626 -80591514 - MLT2B1 LTR ERVL -56 464 1 2043 119 0 75 chrX 96383172 96383507 -80590633 - AluSx SINE Alu 0 312 3 21 0 0 0 chrX 96383914 96383935 -80590205 + AT_rich Low_complexity Low_complexity 1 21 0 184 179 26 0 chrX 96384207 96384246 -80589894 + L2 LINE L2 3270 3309 -4 421 169 14 0 chrX 96384518 96384589 -80589551 - Tigger2 DNA MER2_type -10 2708 2637 5155 116 14 35 chrX 96384596 96385131 -80589009 - L1MA3 LINE L1 -11 6294 5784 2188 126 7 0 chrX 96385131 96385440 -80588700 - AluSx SINE Alu -1 311 1 5155 116 14 35 chrX 96385440 96385791 -80588349 - L1MA3 LINE L1 -521 5784 5427 8822 162 52 15 chrX 96385819 96389083 -80585057 - L1 LINE L1 -2099 5466 2078 605 252 21 0 chrX 96389084 96389227 -80584913 - L1 LINE L1 -7256 309 164 4084 175 45 8 chrX 96389228 96389981 -80584159 - L1M1 LINE L1 -5490 2075 1295 642 193 23 29 chrX 96389979 96390150 -80583990 - L1 LINE L1 -7387 178 9 * 1575 155 106 6 chrX 96390150 96390498 -80583642 - Tigger2 DNA MER2_type -63 2655 2273 21 0 0 0 chrX 96390977 96390998 -80583142 + AT_rich Low_complexity Low_complexity 1 21 0 249 254 0 0 chrX 96392819 96392890 -80581250 + (CA)n Simple_repeat Simple_repeat 2 72 0 397 274 9 35 chrX 96392909 96393022 -80581118 - MER5B DNA MER1_type -68 110 1 653 208 21 14 chrX 96393078 96393222 -80580918 - MIR SINE MIR -6 256 112 243 267 0 0 chrX 96393384 96393459 -80580681 + (CA)n Simple_repeat Simple_repeat 2 76 0 472 245 88 20 chrX 96393946 96394107 -80580033 + MIR3 SINE MIR 28 197 -11 33 43 0 0 chrX 96394899 96394946 -80579194 + AT_rich Low_complexity Low_complexity 1 47 0 2163 111 0 0 chrX 96396046 96396325 -80577815 + AluSx SINE Alu 24 302 -10 225 0 0 0 chrX 96396341 96396366 -80577774 + (TG)n Simple_repeat Simple_repeat 2 26 0 674 204 46 0 chrX 96396523 96396675 -80577465 + MER3 DNA MER1_type 9 167 -42 4131 170 38 5 chrX 96396685 96397608 -80576532 + L1MA7 LINE L1 4168 5120 -1026 1913 166 36 11 chrX 96397608 96397970 -80576170 + THE1C LTR MaLR 1 371 -4 1715 115 4 4 chrX 96397976 96398245 -80575895 + THE1C-int LTR MaLR 3 271 -1309 2651 75 8 47 chrX 96398248 96398650 -80575490 - L1PA7 LINE L1 0 6154 5769 41791 39 3 1 chrX 96398657 96404761 -80569379 - L1PA4 LINE L1 -2 6153 32 2018 70 0 0 chrX 96404784 96405055 -80569085 + L1P3 LINE L1 5496 5766 -388 8879 83 6 10 chrX 96405073 96406951 -80567189 - L1PA7 LINE L1 -261 5893 4031 5520 100 12 1 chrX 96407198 96408045 -80566095 - L1PA7 LINE L1 -2102 4044 3189 7481 141 16 47 chrX 96408069 96409577 -80564563 + L1P LINE L1 678 2138 -4008 5027 143 0 15 chrX 96409578 96410399 -80563741 + THE1C-int LTR MaLR 772 1580 0 * 5246 137 43 20 chrX 96410387 96410399 -80563741 + L1MA7 LINE L1 5104 5114 -1177 2064 153 24 19 chrX 96410399 96410772 -80563368 + THE1C LTR MaLR 1 375 0 5246 137 43 20 chrX 96410772 96411286 -80562854 + L1MA7 LINE L1 5114 5615 -676 2270 156 30 28 chrX 96411286 96411717 -80562423 - Tigger2a DNA MER2_type 0 434 3 5246 137 43 20 chrX 96411717 96411872 -80562268 + L1MA7 LINE L1 5615 5765 -526 207 0 0 0 chrX 96411872 96411895 -80562245 + (CA)n Simple_repeat Simple_repeat 2 24 0 5246 137 43 20 chrX 96411895 96412306 -80561834 + L1MA7 LINE L1 5765 6234 -57 231 114 0 0 chrX 96412306 96412341 -80561799 + (TG)n Simple_repeat Simple_repeat 2 36 0 5246 137 43 20 chrX 96412341 96412401 -80561739 + L1MA7 LINE L1 6234 6291 0 29 0 0 0 chrX 96412401 96412430 -80561710 + AT_rich Low_complexity Low_complexity 1 29 0 309 252 206 45 chrX 96412552 96412707 -80561433 - MIR SINE MIR -51 211 32 311 336 0 25 chrX 96412784 96412903 -80561237 + MIR SINE MIR 48 163 -99 507 250 43 0 chrX 96413229 96413345 -80560795 + MIR SINE MIR 32 152 -110 433 234 262 7 chrX 96415295 96415436 -80558704 - MIR SINE MIR -16 246 70 218 306 0 16 chrX 96415621 96415683 -80558457 + GA-rich Low_complexity Low_complexity 6 66 0 1199 187 30 25 chrX 96415804 96416039 -80558101 + MER8 DNA MER2_type 1 236 -3 535 257 9 0 chrX 96417055 96417168 -80556972 - MER81 DNA DNA 0 114 1 532 318 26 10 chrX 96417277 96417469 -80556671 + L2 LINE L2 3119 3313 0 187 286 163 20 chrX 96417471 96417569 -80556571 + MIR SINE MIR 95 206 -56 214 261 106 28 chrX 96417640 96417782 -80556358 - MIR SINE MIR 0 262 110 232 245 19 0 chrX 96417804 96417857 -80556283 - MER21A LTR ERV1 -195 736 683 1359 262 82 23 chrX 96417859 96418298 -80555842 - MER77 LTR ERV1 -9 596 132 257 292 146 0 chrX 96418367 96418456 -80555684 - MIR SINE MIR -142 120 19 237 139 0 0 chrX 96418783 96418826 -80555314 + (CA)n Simple_repeat Simple_repeat 1 43 0 535 317 34 24 chrX 96419351 96419556 -80554584 + MIR SINE MIR 1 207 -55 524 266 40 0 chrX 96419730 96419854 -80554286 + MIR SINE MIR 30 158 -104 242 200 17 17 chrX 96419984 96420044 -80554096 + (TA)n Simple_repeat Simple_repeat 1 60 0 3290 228 45 20 chrX 96420044 96421063 -80553077 - L1M4 LINE L1 -1239 4907 3863 * 4075 182 28 18 chrX 96421060 96422490 -80551650 + L1MB7 LINE L1 4741 6181 -3 21 0 0 0 chrX 96422508 96422529 -80551611 + AT_rich Low_complexity Low_complexity 1 21 0 2458 68 3 0 chrX 96422658 96422966 -80551174 + AluY SINE Alu 1 309 -2 298 329 0 0 chrX 96424630 96424715 -80549425 - L2 LINE L2 0 3272 3188 2158 179 44 12 chrX 96424835 96425065 -80549075 - MSTB LTR MaLR 0 426 176 2583 48 0 6 chrX 96425065 96425377 -80548763 - AluY SINE Alu -1 310 1 2158 179 44 12 chrX 96425377 96425553 -80548587 - MSTB LTR MaLR -250 176 7 1656 119 90 32 chrX 96425584 96425895 -80548245 + MER44D DNA MER2_type 11 609 0 21 0 0 0 chrX 96427617 96427638 -80546502 + AT_rich Low_complexity Low_complexity 1 21 0 312 106 21 0 chrX 96428078 96428125 -80546015 - MLT2D LTR ERVL 0 414 367 519 202 0 0 chrX 96428268 96428367 -80545773 - MLT2B1 LTR ERVL -40 480 382 946 253 60 14 chrX 96428369 96428650 -80545490 - L2 LINE L2 -688 2626 2333 219 295 16 0 chrX 96428689 96428750 -80545390 + L2 LINE L2 3211 3272 0 191 36 36 0 chrX 96430241 96430269 -80543871 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 315 311 92 18 chrX 96430270 96430434 -80543706 - L2 LINE L2 -12 3301 3126 191 296 141 67 chrX 96430559 96430694 -80543446 + L2 LINE L2 3169 3313 0 * 207 217 22 98 chrX 96430684 96430776 -80543364 - MIR SINE MIR -61 201 117 691 286 0 0 chrX 96430830 96431005 -80543135 - MIR SINE MIR -2 260 86 307 308 131 0 chrX 96431176 96431283 -80542857 - MIR SINE MIR -70 138 18 538 277 0 0 chrX 96431909 96432039 -80542101 + MIR SINE MIR 15 144 -118 23 54 0 0 chrX 96432049 96432086 -80542054 + AT_rich Low_complexity Low_complexity 1 37 0 330 264 47 9 chrX 96432324 96432430 -80541710 + MIR SINE MIR 153 262 0 331 344 94 0 chrX 96432488 96432616 -80541524 - L2 LINE L2 -17 3255 3116 303 305 9 19 chrX 96432892 96432999 -80541141 + MIR SINE MIR 20 123 -102 1475 321 171 28 chrX 96433369 96433950 -80540190 + L2 LINE L2 1848 2345 -927 1748 159 3 36 chrX 96433950 96434252 -80539888 - AluSx SINE Alu -20 292 1 1475 321 171 28 chrX 96434252 96434913 -80539227 + L2 LINE L2 2345 3263 -9 2440 165 25 6 chrX 96434913 96435392 -80538748 + L1MB7 LINE L1 5688 6175 -9 1475 321 171 28 chrX 96435392 96435404 -80538736 + L2 LINE L2 3263 3272 0 225 240 20 0 chrX 96435569 96435619 -80538521 - L3b LINE CR1 -4 1579 1529 * 525 295 23 35 chrX 96435588 96435761 -80538379 - MIR3 SINE MIR -28 180 10 307 228 13 17 chrX 96435824 96435918 -80538222 - MLT1J LTR MaLR -354 96 1 2127 117 3 0 chrX 96436272 96436555 -80537585 + AluSg SINE Alu 4 287 -23 180 0 0 0 chrX 96436568 96436588 -80537552 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 21 36 0 0 chrX 96436609 96436637 -80537503 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 96436701 96436722 -80537418 + AT_rich Low_complexity Low_complexity 1 21 0 256 140 0 20 chrX 96436726 96436776 -80537364 + Alu SINE Alu 1 42 -257 315 344 33 8 chrX 96439511 96439633 -80534507 + MIR SINE MIR 20 144 -118 2077 163 11 17 chrX 96439639 96440000 -80534140 + MLT1A1 LTR MaLR 7 365 0 298 312 0 0 chrX 96440507 96440584 -80533556 + MIR SINE MIR 167 243 -19 4319 98 190 91 chrX 96440639 96441886 -80532254 - pTR5 LTR ERV1 0 2438 741 321 340 140 0 chrX 96441887 96442037 -80532103 + MIR SINE MIR 91 261 -1 2468 97 22 19 chrX 96443095 96443457 -80530683 + THE1C LTR MaLR 13 375 0 800 239 51 20 chrX 96445522 96445719 -80528421 - MIR SINE MIR -39 223 21 375 346 31 0 chrX 96448341 96448468 -80525672 - L2 LINE L2 0 3313 3183 23 0 0 0 chrX 96450111 96450134 -80524006 + AT_rich Low_complexity Low_complexity 1 23 0 543 269 56 6 chrX 96450143 96450303 -80523837 + LTR16B LTR ERVL 297 464 0 207 125 18 36 chrX 96450524 96450580 -80523560 + CT-rich Low_complexity Low_complexity 2 56 0 478 225 9 36 chrX 96450807 96450918 -80523222 + L2 LINE L2 3163 3270 -2 1103 194 90 14 chrX 96451258 96451480 -80522660 - MER8 DNA MER2_type 0 239 1 616 319 194 7 chrX 96451565 96451838 -80522302 - L3 LINE CR1 -2 1575 1252 185 365 76 28 chrX 96453093 96453238 -80520902 - MIR3 SINE MIR -6 202 51 257 364 55 0 chrX 96454059 96454224 -80519916 - L1MC4a LINE L1 -1880 5928 5755 1636 198 3 64 chrX 96454698 96455087 -80519053 - MLT1A1 LTR MaLR 0 365 1 235 348 0 37 chrX 96455428 96455563 -80518577 + L2 LINE L2 2724 2853 -461 618 274 172 5 chrX 96455606 96455821 -80518319 - MIR SINE MIR -1 261 11 398 264 71 39 chrX 96455823 96456005 -80518135 - MER5A DNA MER1_type 0 189 2 418 254 142 65 chrX 96456014 96456183 -80517957 - MER5A DNA MER1_type 0 189 8 369 360 20 0 chrX 96456570 96456717 -80517423 - MIR3 SINE MIR -14 194 45 180 0 0 0 chrX 96456744 96456764 -80517376 + (TTGG)n Simple_repeat Simple_repeat 1 20 0 1029 202 89 83 chrX 96456890 96457226 -80516914 - MER58B DNA MER1_type -2 339 2 28 0 0 0 chrX 96457872 96457900 -80516240 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 96459025 96459049 -80515091 + AT_rich Low_complexity Low_complexity 1 24 0 1928 171 43 3 chrX 96459197 96459548 -80514592 - MLT1A1 LTR MaLR 0 365 1 365 257 0 0 chrX 96459998 96460072 -80514068 - L2 LINE L2 0 3272 3199 287 297 0 0 chrX 96460512 96460576 -80513564 + L2 LINE L2 3191 3254 -18 2022 106 7 18 chrX 96460620 96460804 -80513336 - AluSx SINE Alu 0 317 136 2435 63 0 10 chrX 96460804 96461106 -80513034 - AluY SINE Alu -12 299 1 2022 106 7 18 chrX 96461106 96461229 -80512911 - AluSx SINE Alu -181 136 13 1165 222 83 38 chrX 96461289 96461577 -80512563 - AluJo SINE Alu -1 301 1 471 269 31 0 chrX 96461577 96461707 -80512433 + MIR SINE MIR 92 225 -37 422 207 52 67 chrX 96461808 96461943 -80512197 + MIR SINE MIR 130 262 0 202 204 61 0 chrX 96461951 96462000 -80512140 + MIR SINE MIR 211 262 0 215 257 18 124 chrX 96463111 96463224 -80510916 - L2 LINE L2 -3 3269 3169 22 35 0 0 chrX 96463379 96463408 -80510732 + AT_rich Low_complexity Low_complexity 1 29 0 238 179 36 0 chrX 96463427 96463483 -80510657 + (TA)n Simple_repeat Simple_repeat 2 59 0 317 364 51 0 chrX 96464420 96464538 -80509602 + L2 LINE L2 3133 3256 -16 829 245 99 27 chrX 96464589 96464883 -80509257 + L2 LINE L2 2996 3310 -3 1239 126 16 5 chrX 96467500 96467691 -80506449 - MER46A DNA MER2_type 0 236 44 7463 127 16 7 chrX 96467691 96469778 -80504362 + L1MA1 LINE L1 4188 6302 0 386 161 0 0 chrX 96469791 96469853 -80504287 - MER46A DNA MER2_type -174 62 1 181 0 69 0 chrX 96470514 96470543 -80503597 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 43289 41 6 3 chrX 96470546 96476685 -80497455 - L1PA4 LINE L1 -3 6152 1 275 197 227 45 chrX 96476767 96476899 -80497241 - MER103 DNA DNA -10 156 1 244 273 113 0 chrX 96477576 96477666 -80496474 - MIR SINE MIR -66 142 45 291 257 95 9 chrX 96478777 96478882 -80495258 - MIR SINE MIR -6 256 143 * 503 315 215 10 chrX 96478880 96479191 -80494949 + L2 LINE L2 1467 1841 -1473 825 283 41 10 chrX 96479445 96479738 -80494402 + L2 LINE L2 1826 2127 -1187 1176 159 0 5 chrX 96479832 96480027 -80494113 - L1PA15 LINE L1 -2 6163 5970 15830 32 4 1 chrX 96480879 96482808 -80491332 - L1PA3 LINE L1 -1696 4450 2516 8054 30 0 3 chrX 96482809 96484538 -80489602 + L1PA3 LINE L1 4430 6155 0 238 326 0 54 chrX 96485473 96485565 -80488575 + MIR3 SINE MIR 11 97 -111 1777 264 26 47 chrX 96485614 96486273 -80487867 + HAL1 LINE L1 8 652 -1855 1440 233 78 73 chrX 96486255 96486848 -80487292 + HAL1 LINE L1 1860 2458 -49 * 1766 152 3 55 chrX 96486848 96487158 -80486982 - AluJo SINE Alu -17 295 2 1440 233 78 73 chrX 96487158 96487204 -80486936 + HAL1 LINE L1 2458 2502 -5 1364 203 42 3 chrX 96489658 96489969 -80484171 - MER33 DNA MER1_type 0 324 2 661 189 108 0 chrX 96490053 96490201 -80483939 - MER3 DNA MER1_type 0 209 46 6146 125 108 25 chrX 96491881 96493061 -80481079 - MER52C LTR ERV1 0 1278 1 1265 85 6 6 chrX 96493099 96493275 -80480865 + L1PA8A LINE L1 5928 6103 -28 1479 234 117 20 chrX 96493316 96493768 -80480372 - MLT1J LTR MaLR -10 501 6 2081 98 10 0 chrX 96494005 96494311 -80479829 - L1PA8 LINE L1 0 6172 5864 673 91 0 0 chrX 96494320 96494408 -80479732 - L1P3 LINE L1 -6366 95 8 689 299 83 5 chrX 96494656 96494873 -80479267 - MIR SINE MIR 0 262 29 1287 135 4 25 chrX 96494907 96495144 -80478996 - MER6 DNA MER2_type 0 865 634 1020 209 0 0 chrX 96495145 96495322 -80478818 + FRAM SINE Alu 1 172 -4 1192 202 120 2 chrX 96495323 96495449 -80478691 - MER6 DNA MER2_type -245 620 510 282 95 0 0 chrX 96495449 96495491 -80478649 + (CA)n Simple_repeat Simple_repeat 2 43 0 1192 202 120 2 chrX 96495491 96495668 -80478472 - MER6 DNA MER2_type -355 510 1 671 231 8 0 chrX 96495751 96495881 -80478259 - FLAM_A SINE Alu -2 131 1 626 245 50 0 chrX 96495897 96496056 -80478084 - MER3 DNA MER1_type -42 167 1 2128 135 58 9 chrX 96496357 96496705 -80477435 - MLT1A1 LTR MaLR 0 365 1 276 317 52 30 chrX 96497871 96498028 -80476112 + MIR3 SINE MIR 12 173 -35 26 0 0 0 chrX 96498397 96498423 -80475717 + AT_rich Low_complexity Low_complexity 1 26 0 487 301 13 13 chrX 96499240 96499396 -80474744 + MIR SINE MIR 107 262 0 698 330 26 52 chrX 96504657 96505304 -80468836 - L2 LINE L2 -3 3269 2656 796 280 58 16 chrX 96506647 96506890 -80467250 - MIR SINE MIR -9 253 1 2494 208 44 2 chrX 96506985 96507535 -80466605 + L1ME2 LINE L1 5583 6155 -9 180 318 95 0 chrX 96507800 96507863 -80466277 + L2 LINE L2 3154 3222 -50 963 196 9 133 chrX 96508017 96508363 -80465777 + L2 LINE L2 3002 3304 -9 287 330 91 72 chrX 96509210 96509486 -80464654 - L2 LINE L2 -5 3267 2987 3443 284 109 42 chrX 96509645 96510132 -80464008 - L2 LINE L2 0 3272 2819 1115 151 95 98 chrX 96510132 96510457 -80463683 + MER33 DNA MER1_type 1 324 0 3443 284 109 42 chrX 96510457 96511496 -80462644 - L2 LINE L2 -453 2819 1851 1684 164 25 11 chrX 96511496 96511777 -80462363 + AluJo SINE Alu 3 287 -25 3443 284 109 42 chrX 96511777 96511800 -80462340 - L2 LINE L2 -1421 1851 1831 1666 198 10 7 chrX 96511800 96512103 -80462037 - AluJo SINE Alu -8 304 1 3443 284 109 42 chrX 96512103 96512516 -80461624 - L2 LINE L2 -1441 1831 1170 356 269 0 0 chrX 96516875 96516953 -80457187 - MIR SINE MIR -3 259 182 21 36 0 0 chrX 96517644 96517672 -80456468 + AT_rich Low_complexity Low_complexity 1 28 0 270 301 124 0 chrX 96518181 96518294 -80455846 + L2 LINE L2 3177 3303 -10 487 261 183 0 chrX 96518384 96518526 -80455614 + MER5A DNA MER1_type 22 189 0 223 281 62 0 chrX 96520300 96520364 -80453776 - MIR3 SINE MIR -48 160 93 195 328 47 0 chrX 96520548 96520612 -80453528 + L3 LINE CR1 1500 1566 -11 1307 229 128 46 chrX 96521020 96521386 -80452754 - MSTD LTR MaLR 0 396 1 7348 39 3 0 chrX 96521487 96522763 -80451377 + L1PA4 LINE L1 4873 6152 -3 34 42 0 0 chrX 96522966 96523014 -80451126 + AT_rich Low_complexity Low_complexity 1 48 0 502 213 164 0 chrX 96524058 96524180 -80449960 + MIR SINE MIR 15 156 -106 1992 173 165 4 chrX 96524359 96524638 -80449502 - L1MB7 LINE L1 -1 6183 5905 720 199 37 54 chrX 96524638 96524879 -80449261 - L1PB1 LINE L1 -319 5832 5596 471 35 0 0 chrX 96525593 96525650 -80448490 + (TC)n Simple_repeat Simple_repeat 1 57 0 270 0 0 0 chrX 96525649 96525679 -80448461 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 239 196 59 0 chrX 96526015 96526066 -80448074 + MER5A DNA MER1_type 136 189 0 12515 87 6 2 chrX 96527184 96530330 -80443810 - L1PA7 LINE L1 0 6154 3125 204 274 151 0 chrX 96531221 96531294 -80442846 + L2 LINE L2 2798 2881 -433 342 297 10 0 chrX 96531615 96531716 -80442424 + MIR SINE MIR 104 205 -57 7310 21 0 1 chrX 96532940 96533830 -80440310 - L1P LINE L1 -2978 3168 2280 3069 53 0 10 chrX 96533829 96534225 -80439915 - L1P LINE L1 -5441 705 314 * 1341 57 11 6 chrX 96534238 96534415 -80439725 - AluY SINE Alu -3 308 131 2549 58 3 0 chrX 96534415 96534740 -80439400 - L1P LINE L1 -5816 330 5 452 326 131 5 chrX 96535162 96535383 -80438757 + MIR SINE MIR 2 250 -12 21 36 0 0 chrX 96535569 96535597 -80438543 + AT_rich Low_complexity Low_complexity 1 28 0 306 316 23 47 chrX 96536526 96536697 -80437443 - MARNA DNA Mariner -342 244 78 431 274 129 8 chrX 96537892 96538016 -80436124 - L2 LINE L2 0 3272 3134 1070 164 28 0 chrX 96538068 96538245 -80435895 - FRAM SINE Alu 0 176 1 1925 194 102 15 chrX 96538325 96538737 -80435403 - MER66A LTR ERV1 -3 475 28 269 182 40 0 chrX 96539018 96539117 -80435023 + (TA)n Simple_repeat Simple_repeat 2 104 0 414 244 42 34 chrX 96539759 96539878 -80434262 + MIR SINE MIR 30 149 -59 1823 115 67 0 chrX 96539878 96540000 -80434140 + AluSx SINE Alu 1 113 -199 306 0 0 0 chrX 96540000 96540034 -80434106 + (TG)n Simple_repeat Simple_repeat 2 35 0 1823 115 67 0 chrX 96540034 96540205 -80433935 + AluSx SINE Alu 113 312 0 1738 146 3 37 chrX 96541339 96541634 -80432506 + AluJo SINE Alu 1 285 -27 564 196 0 10 chrX 96541653 96541755 -80432385 + MER45A DNA AcHobo 77 177 -1 27 0 0 0 chrX 96542245 96542272 -80431868 + AT_rich Low_complexity Low_complexity 1 27 0 480 319 43 0 chrX 96543845 96543983 -80430157 - MIR SINE MIR -109 153 10 180 289 0 0 chrX 96544022 96544067 -80430073 - L3 LINE CR1 -450 1127 1083 621 275 36 74 chrX 96545065 96545374 -80428766 + L2 LINE L2 3005 3301 -12 249 33 0 0 chrX 96545376 96545406 -80428734 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 202 182 36 52 chrX 96546349 96546433 -80427707 + MIR3 SINE MIR 97 169 -39 252 59 0 0 chrX 96547473 96547507 -80426633 + (GA)n Simple_repeat Simple_repeat 1 34 0 2445 57 0 0 chrX 96547818 96548149 -80425991 - AluY SINE Alu 0 331 1 291 240 27 0 chrX 96548260 96548335 -80425805 + L1MEd LINE L1 16 92 -6027 918 150 6 58 chrX 96548336 96548509 -80425631 - FRAM SINE Alu -11 165 2 1697 307 94 30 chrX 96548511 96549596 -80424544 + L1MEd LINE L1 87 1241 -4878 704 266 64 46 chrX 96549785 96550221 -80423919 + L1MEd LINE L1 2114 2557 -3572 1086 223 52 31 chrX 96550279 96550570 -80423570 - MER58B DNA MER1_type -43 298 2 3160 275 72 49 chrX 96550639 96552518 -80421622 + L1MEd LINE L1 2659 4610 -1537 405 0 0 0 chrX 96552518 96552563 -80421577 + (TG)n Simple_repeat Simple_repeat 2 46 0 3160 275 72 49 chrX 96552563 96553793 -80420347 + L1MEd LINE L1 4610 5811 -336 2610 150 87 0 chrX 96553827 96554274 -80419866 - MER66B LTR ERV1 0 486 1 41625 128 40 24 chrX 96554274 96554604 -80419536 - MER66A-int LTR ERV1 0 6676 6353 2315 98 0 0 chrX 96554604 96554910 -80419230 + AluSx SINE Alu 1 306 -6 41625 128 40 24 chrX 96554910 96561147 -80412993 - MER66A-int LTR ERV1 -323 6353 1 2990 164 0 17 chrX 96561152 96561633 -80412507 - MER66A LTR ERV1 -5 473 1 297 316 78 14 chrX 96562060 96562278 -80411862 + L1MC4a LINE L1 4081 4312 -1834 415 288 176 34 chrX 96562413 96562736 -80411404 + L1MC4a LINE L1 4483 4851 -1295 248 216 49 39 chrX 96563112 96563214 -80410926 + L1MC4a LINE L1 5326 5428 -2380 661 295 56 42 chrX 96563275 96563310 -80410830 + L1MC4a LINE L1 5622 5655 -466 1232 178 19 0 chrX 96563310 96563524 -80410616 + MER20 DNA MER1_type 2 219 0 661 295 56 42 chrX 96563524 96563935 -80410205 + L1MC4a LINE L1 5655 6066 -55 4389 192 46 19 chrX 96564151 96564594 -80409546 - L1P LINE L1 -1296 4850 4420 408 20 0 0 chrX 96564594 96564643 -80409497 + (TG)n Simple_repeat Simple_repeat 2 50 0 4389 192 46 19 chrX 96564643 96564666 -80409474 - L1P LINE L1 -1726 4420 4399 1356 149 22 4 chrX 96564666 96564894 -80409246 - L1PA15 LINE L1 0 6165 5934 4389 192 46 19 chrX 96564894 96565429 -80408711 - L1P LINE L1 -1747 4399 3821 1513 126 19 34 chrX 96565429 96565698 -80408442 + L1PA15 LINE L1 5900 6164 -1 207 194 0 97 chrX 96566052 96566114 -80408026 + L2 LINE L2 3257 3312 -1 273 128 92 9 chrX 96566877 96566986 -80407154 + (TA)n Simple_repeat Simple_repeat 1 118 0 568 118 17 39 chrX 96566986 96567164 -80406976 + (TTATA)n Simple_repeat Simple_repeat 5 178 0 310 139 41 25 chrX 96567145 96567267 -80406873 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 * 2279 105 0 10 chrX 96568614 96568927 -80405213 - AluSg SINE Alu 0 310 1 3674 138 39 0 chrX 96569565 96570123 -80404017 - L1PA12 LINE L1 -7000 581 2 2262 188 43 22 chrX 96570121 96570163 -80403977 - L1MCa LINE L1 -5014 893 853 * 300 27 0 0 chrX 96570163 96570200 -80403940 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2262 188 43 22 chrX 96570200 96570745 -80403395 - L1MCa LINE L1 -5054 853 346 973 178 23 32 chrX 96570762 96570981 -80403159 - L1MCa LINE L1 -6189 237 21 539 321 79 33 chrX 96571134 96571374 -80402766 - MIR SINE MIR -2 260 10 2374 84 3 0 chrX 96571577 96571875 -80402265 - AluSp SINE Alu -14 299 1 2327 105 47 8 chrX 96572731 96573092 -80401048 + THE1C LTR MaLR 1 375 0 255 175 0 0 chrX 96574476 96574533 -80399607 + (CA)n Simple_repeat Simple_repeat 2 58 0 2325 99 0 3 chrX 96574740 96575034 -80399106 - AluSx SINE Alu -18 294 2 1247 170 64 72 chrX 96576991 96577179 -80396961 + L1MA9 LINE L1 5920 6105 -207 1961 128 3 20 chrX 96577179 96577476 -80396664 + AluSx SINE Alu 7 298 -14 1247 170 64 72 chrX 96577476 96577646 -80396494 + L1MA9 LINE L1 6105 6275 -37 33 43 0 0 chrX 96578072 96578119 -80396021 + AT_rich Low_complexity Low_complexity 1 47 0 339 268 71 121 chrX 96578716 96578914 -80395226 - MER5A DNA MER1_type 0 189 2 289 250 0 56 chrX 96579135 96579207 -80394933 - L2 LINE L2 0 3272 3205 3131 19 0 0 chrX 96580317 96580682 -80393458 - L1P LINE L1 -1581 4565 4201 2745 25 6 0 chrX 96580660 96580986 -80393154 + L1PA2 LINE L1 5828 6155 0 * 611 295 25 37 chrX 96581835 96581927 -80392213 - MIR SINE MIR -13 249 157 4242 85 50 28 chrX 96581927 96582564 -80391576 + MER39B LTR ERV1 1 651 -2 611 295 25 37 chrX 96582564 96582693 -80391447 - MIR SINE MIR -105 157 33 251 206 29 0 chrX 96583423 96583491 -80390649 + GA-rich Low_complexity Low_complexity 2 71 0 281 194 51 102 chrX 96583515 96583613 -80390527 + MER103 DNA DNA 29 121 -45 2029 151 0 0 chrX 96583621 96583912 -80390228 + AluSx SINE Alu 3 293 -19 254 313 122 0 chrX 96584137 96584268 -80389872 + L2 LINE L2 3154 3300 -13 284 348 25 17 chrX 96584446 96584564 -80389576 - MIR3 SINE MIR -88 120 2 2209 102 3 10 chrX 96584815 96585119 -80389021 + AluSp SINE Alu 1 302 -11 599 254 57 38 chrX 96585123 96585332 -80388808 - MER102b DNA MER1_type -12 329 117 419 285 61 24 chrX 96587352 96587517 -80386623 - MIR SINE MIR -87 175 5 463 340 56 19 chrX 96587876 96588091 -80386049 - MIR SINE MIR -28 234 12 2408 85 0 0 chrX 96588162 96588469 -80385671 - AluSc SINE Alu -2 307 1 6978 60 8 0 chrX 96588494 96590124 -80384016 + L1PA7 LINE L1 4516 6151 -3 2301 133 6 0 chrX 96590177 96590522 -80383618 + MER7A DNA MER2_type 1 345 -1 213 132 0 0 chrX 96590523 96590561 -80383579 + (TTA)n Simple_repeat Simple_repeat 1 38 0 269 146 42 0 chrX 96591292 96591340 -80382800 + L2 LINE L2 3223 3272 0 200 365 52 17 chrX 96592015 96592130 -80382010 - L2 LINE L2 -215 3057 2939 934 289 142 9 chrX 96592142 96592481 -80381659 - L2 LINE L2 -710 2604 2221 352 322 98 0 chrX 96592791 96592934 -80381206 - MIR SINE MIR -30 232 76 243 220 0 0 chrX 96593274 96593324 -80380816 + MIR SINE MIR 213 262 0 524 232 76 0 chrX 96593356 96593492 -80380648 - MIR SINE MIR -64 144 37 209 281 0 18 chrX 96593855 96593912 -80380228 - L2 LINE L2 -8 3264 3209 23 0 0 0 chrX 96594104 96594127 -80380013 + AT_rich Low_complexity Low_complexity 1 23 0 431 289 14 49 chrX 96594197 96594339 -80379801 - MIR3 SINE MIR -14 194 58 428 314 0 8 chrX 96594878 96594996 -80379144 + MIR SINE MIR 20 136 -126 201 178 0 0 chrX 96595100 96595145 -80378995 + (CTA)n Simple_repeat Simple_repeat 1 45 0 369 296 26 9 chrX 96595451 96595566 -80378574 + L2 LINE L2 3197 3313 0 926 300 79 47 chrX 96595624 96596491 -80377649 - L2 LINE L2 0 3313 2406 366 322 55 14 chrX 96596511 96596657 -80377483 - L2 LINE L2 -1 3312 3161 383 23 0 0 chrX 96597174 96597218 -80376922 - L1P LINE L1 -1182 4964 4921 22 70 0 0 chrX 96597233 96597276 -80376864 + AT_rich Low_complexity Low_complexity 1 43 0 225 183 171 24 chrX 96597287 96597369 -80376771 - L1MA10 LINE L1 -3 6331 6238 260 197 47 0 chrX 96597394 96597463 -80376677 - L1MB5 LINE L1 -155 6011 5936 3092 236 100 11 chrX 96597855 96598736 -80375404 - L2 LINE L2 -407 2907 1949 454 336 48 83 chrX 96598851 96599140 -80375000 - L2 LINE L2 -1 3271 2993 460 242 11 0 chrX 96600420 96600510 -80373630 + Charlie1 DNA MER1_type 2 92 -2669 1294 202 0 55 chrX 96600510 96600763 -80373377 - MER8 DNA MER2_type 0 239 1 * 2929 175 26 92 chrX 96600763 96601521 -80372619 + Charlie1 DNA MER1_type 2014 2718 -43 2287 86 3 20 chrX 96601521 96601825 -80372315 + AluSg SINE Alu 1 299 -11 2929 175 26 92 chrX 96601825 96601867 -80372273 + Charlie1 DNA MER1_type 2718 2761 0 602 272 76 27 chrX 96602082 96602383 -80371757 - L1MB5 LINE L1 -2165 5643 5328 191 341 0 0 chrX 96603357 96603401 -80370739 - L2 LINE L2 -20 3252 3209 312 286 83 0 chrX 96603451 96603535 -80370605 - MIR SINE MIR -15 247 157 252 306 41 47 chrX 96603793 96603963 -80370177 - L2 LINE L2 -460 2854 2686 530 277 31 54 chrX 96604204 96604464 -80369676 - MER112 DNA MER1_type -6 254 1 232 368 30 18 chrX 96604557 96604723 -80369417 + L2 LINE L2 2572 2739 -575 214 312 166 6 chrX 96605078 96605235 -80368905 + L2 LINE L2 3131 3312 -1 483 275 35 85 chrX 96605348 96605548 -80368592 + MIR3 SINE MIR 3 192 -16 2666 263 114 62 chrX 96605575 96606070 -80368070 - L2 LINE L2 -3 3310 2842 1745 123 30 92 chrX 96606070 96606470 -80367670 - THE1C LTR MaLR 0 375 1 2666 263 114 62 chrX 96606470 96606669 -80367471 - L2 LINE L2 -471 2842 2655 1348 122 31 75 chrX 96606669 96606963 -80367177 - L1MA7 LINE L1 0 6291 6011 2666 263 114 62 chrX 96606963 96607803 -80366337 - L2 LINE L2 -658 2655 1699 497 125 34 0 chrX 96607841 96607929 -80366211 - L1MA10 LINE L1 -2 6332 6242 3464 166 38 5 chrX 96607949 96608551 -80365589 - LTR26E LTR ERV1 0 622 1 2285 156 40 35 chrX 96608843 96609266 -80364874 - MSTA LTR MaLR 0 428 4 318 111 0 0 chrX 96609345 96609390 -80364750 - LTR29 LTR ERV1 -577 45 1 1626 155 28 3 chrX 96609627 96609944 -80364196 - HUERS-P1 LTR ERV1 -588 5743 5419 6369 118 50 4 chrX 96609955 96611075 -80363065 - L1MA2 LINE L1 0 6304 5134 4775 175 24 4 chrX 96611074 96611895 -80362245 - L1M1 LINE L1 -6590 975 138 * 816 254 77 32 chrX 96611896 96612250 -80361890 - HUERS-P1 LTR ERV1 -5756 1781 10 315 316 89 24 chrX 96612649 96612817 -80361323 - HUERS-P1 LTR ERV1 -6067 196 18 3276 177 43 12 chrX 96612843 96613441 -80360699 - LTR26E LTR ERV1 -5 617 1 247 176 20 0 chrX 96613441 96613492 -80360648 - L1MA10 LINE L1 -106 6228 6177 796 142 7 40 chrX 96613493 96613508 -80360632 + L1MB1 LINE L1 6013 6027 -162 2225 145 94 5 chrX 96613508 96613901 -80360239 - MSTA LTR MaLR 0 428 1 796 142 7 40 chrX 96613901 96614033 -80360107 + L1MB1 LINE L1 6027 6155 -34 183 80 0 0 chrX 96614033 96614058 -80360082 + (CA)n Simple_repeat Simple_repeat 1 25 0 283 339 16 8 chrX 96614122 96614246 -80359894 + CT-rich Low_complexity Low_complexity 2 126 0 32 26 0 0 chrX 96614441 96614480 -80359660 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chrX 96614618 96614642 -80359498 + AT_rich Low_complexity Low_complexity 1 24 0 1395 252 47 29 chrX 96614928 96615443 -80358697 - L1MC4 LINE L1 -142 7900 7377 521 213 0 0 chrX 96615447 96615541 -80358599 + AluJo SINE Alu 5 98 -214 1511 157 63 105 chrX 96615543 96615925 -80358215 - THE1C LTR MaLR -2 373 8 955 207 0 44 chrX 96615931 96616134 -80358006 + AluJo SINE Alu 93 286 -26 525 48 105 4 chrX 96616156 96616392 -80357748 + (TA)n Simple_repeat Simple_repeat 1 259 0 2145 269 30 12 chrX 96616446 96617049 -80357091 - L1MC4a LINE L1 -851 6957 6344 * 2412 219 101 63 chrX 96617045 96617723 -80356417 - L1ME3 LINE L1 -2 6229 5578 216 0 0 0 chrX 96617723 96617747 -80356393 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2099 125 0 7 chrX 96617747 96618035 -80356105 - AluSq SINE Alu -27 286 1 2412 219 101 63 chrX 96618035 96618148 -80355992 - L1ME3 LINE L1 -653 5578 5471 2392 91 0 0 chrX 96618148 96618445 -80355695 + AluSx SINE Alu 1 297 -15 2412 219 101 63 chrX 96618445 96618559 -80355581 - L1ME3 LINE L1 -760 5471 5288 2420 259 58 18 chrX 96618603 96619565 -80354575 - L1ME3 LINE L1 -2409 3806 2806 1252 248 95 25 chrX 96619577 96620294 -80353846 - L1ME3 LINE L1 -3563 2652 1938 384 138 0 0 chrX 96620303 96620368 -80353772 + (CA)n Simple_repeat Simple_repeat 2 66 0 30 69 0 0 chrX 96620368 96620426 -80353714 + AT_rich Low_complexity Low_complexity 1 58 0 301 188 94 0 chrX 96621361 96621446 -80352694 - L1MA8 LINE L1 -66 6225 6133 641 153 8 0 chrX 96621447 96621565 -80352575 + L1MA8 LINE L1 6171 6289 -2 873 167 0 0 chrX 96624085 96624235 -80349905 - L1MB5 LINE L1 -6 6168 6019 1561 80 88 9 chrX 96624236 96624273 -80349867 - MLT2A1 LTR ERVL -2 442 409 537 16 0 0 chrX 96624273 96624335 -80349805 + (TA)n Simple_repeat Simple_repeat 2 63 0 1561 80 88 9 chrX 96624335 96624523 -80349617 - MLT2A1 LTR ERVL -35 409 199 382 188 0 0 chrX 96624548 96624612 -80349528 - L1MB5 LINE L1 -154 6020 5957 2275 113 0 0 chrX 96624726 96625028 -80349112 + AluSx SINE Alu 1 302 -10 223 349 73 9 chrX 96625690 96625799 -80348341 + MIR SINE MIR 20 135 -73 496 236 64 0 chrX 96626550 96626660 -80347480 - MIR SINE MIR -93 169 53 2544 52 0 3 chrX 96626696 96627006 -80347134 - AluY SINE Alu -1 310 2 219 325 68 75 chrX 96627150 96627402 -80346738 - L2 LINE L2 -189 3083 2834 297 75 0 0 chrX 96628720 96628760 -80345380 + (TG)n Simple_repeat Simple_repeat 2 41 0 445 244 11 0 chrX 96629269 96629445 -80344695 + (TG)n Simple_repeat Simple_repeat 2 179 0 218 209 0 0 chrX 96629461 96629504 -80344636 + (TATG)n Simple_repeat Simple_repeat 2 44 0 267 283 65 65 chrX 96629631 96629769 -80344371 + L2 LINE L2 2920 3057 -215 194 308 0 15 chrX 96629912 96629977 -80344163 + MER5A DNA MER1_type 126 189 0 467 276 0 37 chrX 96629979 96630113 -80344027 - MIR3 SINE MIR -50 158 30 1064 202 0 0 chrX 96630146 96630324 -80343816 - MER45A DNA AcHobo 0 178 1 198 260 0 20 chrX 96630341 96630391 -80343749 + L2 LINE L2 3261 3309 -4 2357 207 68 64 chrX 96631010 96631662 -80342478 - MLT1E1 LTR MaLR 0 654 1 1985 122 7 7 chrX 96632328 96632607 -80341533 + AluSx SINE Alu 1 279 -33 363 23 0 0 chrX 96632607 96632651 -80341489 + (CA)n Simple_repeat Simple_repeat 1 44 0 193 363 143 0 chrX 96633391 96633482 -80340658 - MIR SINE MIR -69 139 36 4140 180 56 40 chrX 96633758 96634276 -80339864 - L1MB8 LINE L1 -1 6177 5669 411 73 0 0 chrX 96634276 96634331 -80339809 + (TA)n Simple_repeat Simple_repeat 2 56 0 4140 180 56 40 chrX 96634331 96634798 -80339342 - L1MB8 LINE L1 -509 5669 5211 1764 167 3 17 chrX 96634798 96635091 -80339049 - AluJo SINE Alu -23 289 1 4140 180 56 40 chrX 96635091 96635658 -80338482 - L1MB8 LINE L1 -967 5211 4598 923 329 38 25 chrX 96635658 96636053 -80338087 - LTR16B LTR ERVL -64 400 1 1811 186 39 9 chrX 96637396 96637734 -80336406 + MER7A DNA MER2_type 1 346 0 450 249 118 59 chrX 96638004 96638173 -80335967 - MIR3 SINE MIR -14 194 16 1358 159 24 10 chrX 96638430 96638719 -80335421 + MER33 DNA MER1_type 30 322 -2 445 278 136 24 chrX 96638727 96638896 -80335244 + MER5A DNA MER1_type 2 189 0 464 362 72 39 chrX 96639167 96639684 -80334456 + L2 LINE L2 2221 2754 -560 * 584 250 27 7 chrX 96639680 96639828 -80334312 + MIR SINE MIR 108 258 -4 7003 131 18 8 chrX 96641197 96643397 -80330743 + L1MA2 LINE L1 4085 6304 0 22 0 0 0 chrX 96643648 96643670 -80330470 + AT_rich Low_complexity Low_complexity 1 22 0 325 206 0 0 chrX 96645118 96645181 -80328959 - L2 LINE L2 0 3313 3251 283 311 144 59 chrX 96645191 96645748 -80328392 + L2 LINE L2 1989 2592 -722 2335 68 0 0 chrX 96646344 96646624 -80327516 + AluY SINE Alu 1 280 -31 234 0 0 0 chrX 96646624 96646650 -80327490 + (CA)n Simple_repeat Simple_repeat 1 26 0 2088 135 0 10 chrX 96647552 96647864 -80326276 + AluSx SINE Alu 1 309 -3 554 248 8 0 chrX 96648564 96648681 -80325459 + MER97a DNA MER1_type? 1 118 -776 1913 220 235 42 chrX 96648703 96649723 -80324417 + L2 LINE L2 2116 3313 0 195 42 0 0 chrX 96650063 96650087 -80324053 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2183 99 0 7 chrX 96650384 96650678 -80323462 + AluY SINE Alu 1 292 -19 3074 50 0 0 chrX 96650678 96651057 -80323083 + L1PA4 LINE L1 5777 6155 0 513 238 193 37 chrX 96652073 96652426 -80321714 - L1ME4a LINE L1 -98 6023 5616 2094 143 0 13 chrX 96652615 96652930 -80321210 - AluSx SINE Alu -1 311 1 845 240 43 35 chrX 96653003 96653261 -80320879 + MIR SINE MIR 3 262 0 679 270 49 35 chrX 96656005 96656231 -80317909 + MIR SINE MIR 26 254 -8 423 0 0 0 chrX 96656298 96656345 -80317795 + (CAT)n Simple_repeat Simple_repeat 1 47 0 880 155 0 147 chrX 96656418 96656669 -80317471 - MER20 DNA MER1_type -4 215 2 699 263 97 14 chrX 96657038 96657255 -80316885 + MIR SINE MIR 28 262 0 2738 149 15 2 chrX 96657330 96657785 -80316355 - LOR1b LTR ERV1 0 461 1 193 217 0 22 chrX 96658987 96659033 -80315107 - MIR3 SINE MIR 0 208 164 25 51 0 0 chrX 96659139 96659178 -80314962 + AT_rich Low_complexity Low_complexity 1 39 0 2035 112 3 7 chrX 96659187 96659472 -80314668 + AluSp SINE Alu 1 284 -29 6816 61 6 10 chrX 96659472 96660539 -80313601 + L1PA7 LINE L1 5093 6154 0 1439 165 96 34 chrX 96660685 96660976 -80313164 - AluJb SINE Alu -3 309 1 232 295 16 0 chrX 96661032 96661093 -80313047 - MIR SINE MIR -63 145 84 12026 24 1 1 chrX 96661223 96662865 -80311275 - L1PA4 LINE L1 -547 5608 3967 4623 31 2 0 chrX 96662865 96663411 -80310729 + L1PA4 LINE L1 5605 6155 0 442 355 163 26 chrX 96663629 96664416 -80309724 + L2 LINE L2 2380 3268 -4 363 44 0 0 chrX 96664888 96664933 -80309207 + (TG)n Simple_repeat Simple_repeat 1 45 0 180 351 0 0 chrX 96665530 96665587 -80308553 + L2 LINE L2 3033 3089 -224 193 212 15 61 chrX 96665607 96665673 -80308467 - L2 LINE L2 -796 2518 2456 231 250 0 17 chrX 96665677 96665737 -80308403 + L2 LINE L2 3255 3313 0 668 292 60 9 chrX 96665830 96666063 -80308077 + MIR SINE MIR 18 262 0 217 176 0 59 chrX 96666545 96666596 -80307544 + (CATATA)n Simple_repeat Simple_repeat 3 50 0 372 200 0 0 chrX 96666611 96666671 -80307469 + AluJ/FLAM SINE Alu 1 60 -242 889 138 0 14 chrX 96666677 96666815 -80307325 + FRAM SINE Alu 1 40 0 1871 157 3 28 chrX 96667144 96667462 -80306678 + AluJb SINE Alu 3 312 0 737 297 49 44 chrX 96667602 96667969 -80306171 - LTR16A1 LTR ERVL -88 369 1 501 308 53 31 chrX 96668122 96668349 -80305791 - MIR SINE MIR -11 251 20 22 0 0 0 chrX 96668495 96668517 -80305623 + AT_rich Low_complexity Low_complexity 1 22 0 523 286 91 11 chrX 96668597 96668772 -80305368 - MIR SINE MIR -62 200 12 1303 234 63 46 chrX 96669089 96669503 -80304637 - L2 LINE L2 -2 3311 2891 227 105 53 0 chrX 96670389 96670427 -80303713 + MLT1D LTR MaLR 424 463 -42 2011 201 46 31 chrX 96671511 96671988 -80302152 - L1MA7 LINE L1 -25 6852 6369 332 119 17 0 chrX 96672000 96672059 -80302081 + (TA)n Simple_repeat Simple_repeat 1 60 0 12705 211 36 43 chrX 96672062 96674523 -80299617 - L1MA7 LINE L1 -498 6379 3903 1065 152 12 12 chrX 96674523 96674694 -80299446 - AluSg/x SINE Alu -8 302 132 2127 139 3 0 chrX 96674694 96674997 -80299143 - AluSq SINE Alu -9 304 1 12705 211 36 43 chrX 96674997 96676764 -80297376 - L1MA7 LINE L1 -2973 3904 2368 1554 191 71 76 chrX 96676764 96677198 -80296942 + MSTB1 LTR MaLR 1 432 0 12705 211 36 43 chrX 96677198 96678623 -80295517 - L1MA7 LINE L1 -4509 2368 935 5751 112 23 2 chrX 96678963 96680218 -80293922 - L1PA15 LINE L1 0 6165 4919 304 316 65 83 chrX 96680772 96680909 -80293231 - L3 LINE CR1 -68 1509 1374 2246 113 0 0 chrX 96680909 96681201 -80292939 + AluSx SINE Alu 6 297 -15 304 316 65 83 chrX 96681201 96681231 -80292909 - L3 LINE CR1 -203 1374 1345 6011 176 17 18 chrX 96681233 96682589 -80291551 - L1PA13 LINE L1 -11 6152 4796 2067 134 13 0 chrX 96682589 96682895 -80291245 + AluSq SINE Alu 3 312 -1 6011 176 17 18 chrX 96682895 96683417 -80290723 - L1PA13 LINE L1 -1367 4796 4311 2428 66 7 0 chrX 96683417 96683720 -80290420 + AluY SINE Alu 1 305 -6 6011 176 17 18 chrX 96683720 96683898 -80290242 - L1PA13 LINE L1 -1852 4311 4134 2197 94 3 3 chrX 96683980 96684277 -80289863 + AluSg SINE Alu 1 297 -13 200 397 61 23 chrX 96684588 96684719 -80289421 + L2 LINE L2 3127 3262 -10 347 288 37 68 chrX 96685802 96686097 -80288043 - L1MC4a LINE L1 -1785 6023 5738 432 82 0 0 chrX 96686098 96686159 -80287981 + (TG)n Simple_repeat Simple_repeat 1 61 0 242 368 49 11 chrX 96686309 96686494 -80287646 - L2 LINE L2 -5 3308 3117 336 257 200 21 chrX 96687671 96687811 -80286329 + MIR3 SINE MIR 19 183 -25 697 291 68 0 chrX 96688352 96688572 -80285568 + MIR SINE MIR 23 257 -5 386 286 25 8 chrX 96689237 96689356 -80284784 - MIR3 SINE MIR -73 135 15 422 272 29 10 chrX 96689743 96689846 -80284294 - L2 LINE L2 -17 3296 3192 551 303 77 5 chrX 96689849 96690044 -80284096 - MIR SINE MIR -46 216 8 219 245 0 0 chrX 96690304 96690353 -80283787 - MIR SINE MIR -1 261 213 1141 122 37 0 chrX 96690376 96690564 -80283576 - L1MA4 LINE L1 -16 6284 6090 * 7616 24 1 0 chrX 96690560 96691883 -80282257 + L1PA4 LINE L1 4832 6155 0 7137 161 11 12 chrX 96691911 96694036 -80280104 - L1MA4 LINE L1 -198 6102 3977 674 271 5 37 chrX 96694036 96694224 -80279916 - MIR SINE MIR -69 193 12 25 31 0 0 chrX 96695010 96695042 -80279098 + AT_rich Low_complexity Low_complexity 1 32 0 393 361 17 0 chrX 96695568 96695687 -80278453 + MIR3 SINE MIR 34 154 -54 2478 70 0 0 chrX 96695983 96696283 -80277857 - AluSg SINE Alu -10 300 1 2468 74 3 0 chrX 96696617 96696929 -80277211 + AluSp SINE Alu 1 313 0 261 0 0 0 chrX 96697107 96697136 -80277004 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chrX 96697677 96697700 -80276440 + AT_rich Low_complexity Low_complexity 1 23 0 398 331 0 15 chrX 96698490 96698620 -80275520 + MER94 DNA DNA 1 128 -6 295 244 30 84 chrX 96698852 96698983 -80275157 + L2 LINE L2 2635 2758 -556 320 284 0 0 chrX 96699153 96699220 -80274920 + L2 LINE L2 3206 3272 0 7194 13 0 0 chrX 96700088 96700906 -80273234 + L1PA3 LINE L1 5335 6152 -3 26 0 0 0 chrX 96700906 96700932 -80273208 + AT_rich Low_complexity Low_complexity 1 26 0 3098 169 43 75 chrX 96701740 96702456 -80271684 - LTR8A LTR ERV1 -1 726 34 395 304 24 8 chrX 96702558 96702683 -80271457 - MIR SINE MIR -42 220 94 266 405 78 20 chrX 96703211 96703724 -80270416 + L2 LINE L2 2565 3108 -164 22 0 0 0 chrX 96703845 96703867 -80270273 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 96704114 96704139 -80270001 + AT_rich Low_complexity Low_complexity 1 25 0 230 307 54 60 chrX 96704392 96704558 -80269582 + L2 LINE L2 2334 2498 -816 719 217 26 7 chrX 96704579 96704731 -80269409 + MER5A DNA MER1_type 35 189 0 320 420 0 0 chrX 96704740 96704878 -80269262 - L2 LINE L2 -556 2758 2621 292 318 8 23 chrX 96705084 96705216 -80268924 - L2 LINE L2 -974 2340 2211 223 269 93 9 chrX 96705257 96705365 -80268775 + L2 LINE L2 2150 2266 -1048 191 306 189 29 chrX 96705364 96705570 -80268570 - L2 LINE L2 -1132 2182 1944 * 3362 126 10 0 chrX 96705600 96706098 -80268042 + MER1A DNA MER1_type 6 522 -7 240 357 112 23 chrX 96706109 96706456 -80267684 - L2 LINE L2 -1406 1908 1531 24 0 0 0 chrX 96706896 96706920 -80267220 + AT_rich Low_complexity Low_complexity 1 24 0 203 320 30 30 chrX 96707578 96707678 -80266462 + L2 LINE L2 3163 3262 -10 413 325 113 13 chrX 96708226 96708377 -80265763 + L2 LINE L2 3107 3272 0 195 132 0 79 chrX 96708459 96708497 -80265643 - MIR SINE MIR -12 250 216 * 542 332 55 61 chrX 96708464 96708900 -80265240 - L2 LINE L2 -19 3253 2750 188 338 0 42 chrX 96709497 96709568 -80264572 - L2 LINE L2 -1 3271 3204 783 238 52 108 chrX 96709599 96709986 -80264154 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chrX 96710872 96710907 -80263233 + AT_rich Low_complexity Low_complexity 1 35 0 193 250 0 0 chrX 96714509 96714549 -80259591 - L2 LINE L2 -7 3306 3267 378 333 16 8 chrX 96717645 96717771 -80256369 + MIR3 SINE MIR 44 170 -38 946 324 128 7 chrX 96718101 96718546 -80255594 - L2 LINE L2 -4 3309 2811 516 72 0 0 chrX 96718558 96718627 -80255513 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 937 303 207 21 chrX 96718671 96719295 -80254845 - L2 LINE L2 -768 2546 1807 4225 239 27 15 chrX 96719335 96720967 -80253173 + L1M1 LINE L1 2807 4466 -3099 2577 174 68 30 chrX 96720953 96721057 -80253083 + L1MA6 LINE L1 5675 5774 -526 * 306 0 0 0 chrX 96721057 96721091 -80253049 + (TA)n Simple_repeat Simple_repeat 1 34 0 2577 174 68 30 chrX 96721091 96721589 -80252551 + L1MA6 LINE L1 5774 6300 0 609 266 90 21 chrX 96721577 96721912 -80252228 + HAL1b LINE L1 991 1348 0 * 2006 212 42 24 chrX 96721972 96722468 -80251672 + MLT1D LTR MaLR 1 505 0 312 314 151 48 chrX 96722472 96722533 -80251607 + L2 LINE L2 2644 2697 -616 1537 184 16 6 chrX 96722533 96722854 -80251286 + MER33 DNA MER1_type 1 324 0 312 314 151 48 chrX 96722854 96722881 -80251259 + L2 LINE L2 2697 2720 -593 2171 105 0 0 chrX 96722881 96723176 -80250964 - AluSg SINE Alu -15 295 1 312 314 151 48 chrX 96723176 96723601 -80250539 + L2 LINE L2 2720 3205 -108 691 285 31 10 chrX 96725137 96725330 -80248810 + MIR SINE MIR 32 228 -34 2131 117 3 0 chrX 96725942 96726233 -80247907 + AluSx SINE Alu 1 292 -20 199 338 130 0 chrX 96726297 96726451 -80247689 + L2 LINE L2 3140 3313 0 362 337 140 30 chrX 96726606 96726971 -80247169 + L2 LINE L2 2904 3308 -5 267 330 40 20 chrX 96728892 96728992 -80245148 - MER5A DNA MER1_type 0 189 88 298 282 301 0 chrX 96729050 96729206 -80244934 - L3 LINE CR1 -44 1533 1331 1686 129 158 80 chrX 96729711 96730084 -80244056 - MER4A LTR ERV1 0 664 263 603 141 0 10 chrX 96730084 96730183 -80243957 - MER4A LTR ERV1 -566 98 1 12003 108 47 25 chrX 96730189 96732187 -80241953 - MER4A-int LTR ERV1 -2 6596 4557 2534 155 14 78 chrX 96732187 96732832 -80241308 - MER4A-int LTR ERV1 -5765 833 1 1968 122 3 22 chrX 96732835 96733187 -80240953 - MER4A LTR ERV1 0 664 261 682 111 0 10 chrX 96733187 96733286 -80240854 - MER4A LTR ERV1 -566 98 1 978 118 0 13 chrX 96733381 96733533 -80240607 + AluSp/q SINE Alu 164 313 0 477 238 18 73 chrX 96734771 96734935 -80239205 + L2 LINE L2 3159 3313 0 410 310 90 58 chrX 96735021 96735489 -80238651 + L2 LINE L2 2831 3313 0 213 308 28 47 chrX 96736268 96736375 -80237765 + L2 LINE L2 3204 3308 -5 405 330 33 22 chrX 96738176 96738358 -80235782 - MER5A DNA MER1_type 0 189 6 1086 220 10 5 chrX 96738373 96738582 -80235558 - MER58A DNA MER1_type 0 224 15 554 339 21 0 chrX 96738967 96739159 -80234981 - MER117 DNA MER1_type 0 197 2 207 0 0 0 chrX 96740880 96740903 -80233237 + (T)n Simple_repeat Simple_repeat 1 23 0 195 276 53 0 chrX 96742126 96742202 -80231938 + MIR3 SINE MIR 121 200 -8 181 282 42 42 chrX 96742328 96742399 -80231741 - L2 LINE L2 -17 3255 3185 * 247 274 140 40 chrX 96742387 96742525 -80231615 - MIR SINE MIR -62 146 24 2177 213 59 16 chrX 96742586 96743284 -80230856 + L1ME1 LINE L1 5095 5819 -347 4892 111 8 0 chrX 96743289 96744028 -80230112 - L1P LINE L1 -815 5331 4587 * 5784 95 4 0 chrX 96744023 96744814 -80229326 + L1PA10 LINE L1 5373 6166 -2 1215 248 16 16 chrX 96744818 96745136 -80229004 + L1ME1 LINE L1 5812 6129 -37 222 91 0 0 chrX 96745767 96745800 -80228340 + (TA)n Simple_repeat Simple_repeat 2 34 0 1534 160 72 36 chrX 96747600 96747962 -80226178 + THE1C LTR MaLR 1 375 0 198 0 0 0 chrX 96748268 96748290 -80225850 + (A)n Simple_repeat Simple_repeat 1 22 0 2333 123 22 3 chrX 96749480 96749837 -80224303 + THE1B LTR MaLR 1 364 0 219 36 0 0 chrX 96750796 96750824 -80223316 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2183 65 0 48 chrX 96750824 96751114 -80223026 - AluY SINE Alu -35 276 1 2098 123 0 0 chrX 96751544 96751829 -80222311 + AluSx SINE Alu 1 285 -27 6640 132 18 2 chrX 96751959 96753306 -80220834 - L1MA2 LINE L1 0 7723 6355 22 35 0 0 chrX 96753325 96753354 -80220786 + AT_rich Low_complexity Low_complexity 1 29 0 1111 82 0 19 chrX 96753396 96753554 -80220586 - L1PA8 LINE L1 -10 6162 6008 9724 164 36 41 chrX 96753554 96755826 -80218314 - L1MA2 LINE L1 -2404 5161 2879 869 103 23 0 chrX 96755826 96756001 -80218139 + (TA)n Simple_repeat Simple_repeat 1 179 0 9724 164 36 41 chrX 96756001 96756439 -80217701 - L1MA2 LINE L1 -4686 2879 2440 2070 122 3 0 chrX 96756439 96756735 -80217405 - AluSq SINE Alu -16 297 1 9724 164 36 41 chrX 96756735 96757368 -80216772 - L1MA2 LINE L1 -5125 2440 1834 2552 44 0 0 chrX 96757373 96757668 -80216472 + AluY SINE Alu 1 295 -16 1277 100 12 0 chrX 96757668 96757838 -80216302 + AluSc SINE Alu 132 303 -6 1586 221 92 47 chrX 96757838 96758536 -80215604 - L1MA2 LINE L1 -5728 1837 14 276 290 0 14 chrX 96758849 96758918 -80215222 - MIR SINE MIR -73 189 122 333 0 0 0 chrX 96758978 96759015 -80215125 + (TG)n Simple_repeat Simple_repeat 1 37 0 320 283 71 9 chrX 96759444 96759557 -80214583 + MIR SINE MIR 120 239 -23 433 307 0 24 chrX 96761956 96762083 -80212057 + L1M2 LINE L1 1 124 -6725 402 21 0 0 chrX 96862116 96862163 -80111977 + (CA)n Simple_repeat Simple_repeat 2 48 0 4931 129 82 11 chrX 96862178 96863057 -80111083 - MER4E-int LTR ERV1 -5610 1148 208 942 96 50 56 chrX 96863057 96863500 -80110640 - MER4B LTR ERV1 0 610 1 1096 170 5 47 chrX 96863504 96863716 -80110424 - MER4E-int LTR ERV1 -6554 204 2 2109 92 0 0 chrX 96863724 96864018 -80110122 - MER4E LTR ERV1 -9 757 464 1586 108 113 0 chrX 96864019 96864250 -80109890 + AluSx SINE Alu 1 257 -55 6946 52 5 1 chrX 96864832 96866464 -80107676 - L1PA6 LINE L1 -4 6150 4512 1865 178 0 3 chrX 96866477 96866809 -80107331 - L1P3 LINE L1 -6130 331 1 1168 84 6 0 chrX 96866818 96866985 -80107155 - MLT2A1 LTR ERVL -83 361 194 3473 187 53 15 chrX 96867141 96867918 -80106222 - L1MB5 LINE L1 0 6174 5369 620 262 53 4 chrX 96868010 96868273 -80105867 + L1MDb LINE L1 844 1119 -5290 1011 257 63 6 chrX 96868275 96868641 -80105499 + L1ME3 LINE L1 5776 6162 0 823 249 29 66 chrX 96869085 96869435 -80104705 + L1MD1 LINE L1 64 400 -6140 6347 126 9 42 chrX 96870064 96871505 -80102635 + L1MA2 LINE L1 4923 6304 0 1792 239 73 29 chrX 96871502 96871922 -80102218 + L1MD1 LINE L1 998 1466 -5074 * 2203 99 3 0 chrX 96871922 96872233 -80101907 + AluSx SINE Alu 1 312 0 1792 239 73 29 chrX 96872233 96872536 -80101604 + L1MD1 LINE L1 1466 1754 -4786 2367 242 58 11 chrX 96872537 96872752 -80101388 + L1MD1 LINE L1 1780 1984 -4665 411 101 0 43 chrX 96872752 96872821 -80101319 + L1PA16 LINE L1 6089 6154 -12 2367 242 58 11 chrX 96872821 96873505 -80100635 + L1MD1 LINE L1 1984 2756 -3893 6440 22 0 0 chrX 96873507 96874281 -80099859 - L1PA3 LINE L1 -1303 4843 4067 7713 23 0 0 chrX 96874281 96875595 -80098545 + L1PA3 LINE L1 4841 6155 0 3126 232 38 16 chrX 96875621 96876034 -80098106 + L1MD1 LINE L1 2736 3139 -3401 1428 201 24 7 chrX 96876034 96876327 -80097813 + AluJo SINE Alu 1 298 -14 3126 232 38 16 chrX 96876327 96877029 -80097111 + L1MD1 LINE L1 3139 3875 -2665 17731 180 27 22 chrX 96877328 96877598 -80096542 + L1PA13 LINE L1 2 269 -6545 2344 113 0 0 chrX 96877598 96877907 -80096233 + AluSx SINE Alu 1 309 -3 1197 39 22 11 chrX 96877911 96878089 -80096051 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 17731 180 27 22 chrX 96878089 96878674 -80095466 + L1PA13 LINE L1 271 851 -5963 258 32 0 0 chrX 96878674 96878705 -80095435 + (TG)n Simple_repeat Simple_repeat 1 31 0 17731 180 27 22 chrX 96878705 96884050 -80090090 + L1PA13 LINE L1 851 6167 -647 2262 124 30 25 chrX 96884050 96884412 -80089728 + THE1B LTR MaLR 1 364 0 17731 180 27 22 chrX 96884412 96884836 -80089304 + L1PA13 LINE L1 6167 6685 -129 4453 119 65 46 chrX 96884836 96885615 -80088525 + LTR25 LTR ERV1 1 794 0 17731 180 27 22 chrX 96885615 96885742 -80088398 + L1PA13 LINE L1 6685 6810 -4 448 313 39 39 chrX 96885780 96886013 -80088127 - MIR SINE MIR -28 234 2 5525 125 18 26 chrX 96886114 96887013 -80087127 + L1PA13 LINE L1 5272 6163 0 5217 221 73 24 chrX 96887077 96889690 -80084450 + L1MD1 LINE L1 3904 6636 0 1592 257 48 93 chrX 96889669 96890133 -80084007 + L1ME1 LINE L1 7 421 -5975 * 1704 180 30 0 chrX 96890133 96890433 -80083707 + AluJb SINE Alu 3 311 -1 1592 257 48 93 chrX 96890433 96890777 -80083363 + L1ME1 LINE L1 421 779 -5617 1284 203 21 0 chrX 96890777 96891013 -80083127 + MSTC LTR MaLR 186 426 -2 523 240 28 17 chrX 96891057 96891236 -80082904 + L1ME1 LINE L1 1000 1180 -5216 1421 261 82 77 chrX 96891272 96892083 -80082057 + L1ME1 LINE L1 1409 2228 -4168 7673 107 0 0 chrX 96892083 96894020 -80080120 + L1PA8 LINE L1 4238 6172 0 1421 261 82 77 chrX 96894020 96894269 -80079871 + L1ME1 LINE L1 2228 2474 -3922 * 2868 229 85 11 chrX 96894265 96895806 -80078334 + L1ME1 LINE L1 4576 6403 0 1451 186 13 80 chrX 96895833 96896221 -80077919 - MLT1A1 LTR MaLR 0 365 4 23 54 0 0 chrX 96896615 96896652 -80077488 + AT_rich Low_complexity Low_complexity 1 37 0 359 299 60 15 chrX 96896928 96897062 -80077078 + LTR33A LTR ERVL 60 199 -324 6377 120 90 9 chrX 96897864 96899002 -80075138 + Tigger3b DNA MER2_type 2 1231 0 396 206 114 2 chrX 96899280 96899405 -80074735 - MIR SINE MIR -65 143 32 2364 83 0 0 chrX 96900172 96900472 -80073668 - AluSg SINE Alu -10 300 1 300 154 0 0 chrX 96901733 96901785 -80072355 + GA-rich Low_complexity Low_complexity 3 54 0 2226 30 0 0 chrX 96902246 96902511 -80071629 + L1PA4 LINE L1 5888 6152 -3 887 134 0 0 chrX 96903091 96903218 -80070922 + FLAM_C SINE Alu 1 127 -16 1739 138 48 0 chrX 96903579 96903869 -80070271 + AluSx SINE Alu 2 304 0 852 103 0 8 chrX 96904380 96904506 -80069634 + L1PA10 LINE L1 6036 6160 -8 430 298 0 8 chrX 96905129 96905260 -80068880 - L1ME LINE L1 -556 5606 5477 27 0 0 0 chrX 96905294 96905321 -80068819 + AT_rich Low_complexity Low_complexity 1 27 0 6108 19 0 0 chrX 96905321 96906024 -80068116 - L1PA2 LINE L1 0 6155 5453 930 175 7 116 chrX 96906381 96906673 -80067467 + L1 LINE L1 5130 5389 -757 1246 121 39 0 chrX 96906673 96906879 -80067261 + L1MA9 LINE L1 6080 6293 -19 359 272 35 17 chrX 96907632 96907805 -80066335 + L1MC4a LINE L1 4476 4651 -1495 294 258 52 32 chrX 96909540 96909695 -80064445 + L1MC4a LINE L1 5776 5933 -1875 1236 109 17 126 chrX 96911378 96911616 -80062524 - Tigger3b DNA MER2_type 0 1231 1020 235 67 0 0 chrX 96911633 96911663 -80062477 - Tigger3b DNA MER2_type -182 1049 1020 984 116 58 11 chrX 96911673 96911863 -80062277 - Tigger3b DNA MER2_type -806 425 227 * 5504 130 42 27 chrX 96911853 96912851 -80061289 - Tigger3b DNA MER2_type -217 1014 2 24 32 0 0 chrX 96913557 96913588 -80060552 + AT_rich Low_complexity Low_complexity 1 31 0 2191 106 23 3 chrX 96914588 96914890 -80059250 + AluSx SINE Alu 1 308 -4 2554 49 0 0 chrX 96915056 96915363 -80058777 - AluY SINE Alu -4 307 1 190 222 33 100 chrX 96915464 96915554 -80058586 + MIR SINE MIR 11 94 -168 361 265 82 20 chrX 96915562 96915709 -80058431 - L1ME LINE L1 -596 5525 5370 2065 124 0 0 chrX 96915918 96916201 -80057939 - AluSx SINE Alu -13 299 17 231 314 29 25 chrX 96916610 96916852 -80057288 + L1MC4a LINE L1 4457 4699 -1447 275 234 153 9 chrX 96918124 96918235 -80055905 + L1MC4a LINE L1 5773 5899 -1909 211 309 53 21 chrX 96919474 96919568 -80054572 + MIR SINE MIR 18 114 -94 772 90 0 0 chrX 96920916 96921016 -80053124 - LTR12 LTR ERV1 0 714 615 374 201 42 0 chrX 96921018 96921124 -80053016 - LTR30 LTR ERV1 -79 677 544 1662 92 35 4 chrX 96921124 96921382 -80052758 - LTR12 LTR ERV1 -421 2017 52 246 250 0 0 chrX 96921382 96921434 -80052706 - LTR30 LTR ERV1 -670 52 1 8620 87 15 10 chrX 96921434 96922624 -80051516 - HERV9 LTR ERV1 0 8399 7204 3462 88 0 0 chrX 96922622 96923078 -80051062 - HERV9 LTR ERV1 -2024 6375 5920 * 6872 85 5 5 chrX 96923071 96923990 -80050150 - HERV9 LTR ERV1 -5060 3339 2421 5310 182 37 3 chrX 96923991 96925121 -80049019 - L1 LINE L1 -231 7319 5542 * 18062 142 74 15 chrX 96925117 96926556 -80047584 - L1 LINE L1 -4259 3306 1954 15153 34 12 0 chrX 96926556 96929136 -80045004 + L1PA5 LINE L1 3547 6141 -13 261 0 0 0 chrX 96929142 96929171 -80044969 + (TA)n Simple_repeat Simple_repeat 1 29 0 18062 142 74 15 chrX 96929171 96930835 -80043305 - L1 LINE L1 -5615 1950 11 3015 225 50 55 chrX 96930838 96931752 -80042388 + HERVL40-F LTR ERVL 1987 2896 -141 3431 189 19 29 chrX 96931960 96932654 -80041486 + MER76 LTR ERV 2 688 0 1874 277 41 9 chrX 96932687 96933938 -80040202 + L1MEc LINE L1 2132 3406 -2809 445 230 0 101 chrX 96934473 96934621 -80039519 + HERVL40-F LTR ERVL 4920 5052 -478 360 320 92 29 chrX 96935307 96935588 -80038552 + HERVL40-F LTR ERVL 4964 5262 -502 530 325 10 0 chrX 96935818 96936012 -80038128 - ERVL LTR ERVL -2010 3754 3559 17268 192 21 14 chrX 96936079 96938529 -80035611 - L1PA13 LINE L1 -1 6813 4382 183 42 0 0 chrX 96938529 96938553 -80035587 + (TTG)n Simple_repeat Simple_repeat 3 26 0 17268 192 21 14 chrX 96938553 96939965 -80034175 - L1PA13 LINE L1 -2432 4382 2982 1960 125 120 48 chrX 96939965 96940143 -80033997 + MSTA LTR MaLR 1 165 -263 2304 89 0 10 chrX 96940143 96940457 -80033683 + AluY SINE Alu 1 311 0 1960 125 120 48 chrX 96940457 96940677 -80033463 + MSTA LTR MaLR 165 428 0 17268 192 21 14 chrX 96940677 96943584 -80030556 - L1PA13 LINE L1 -3832 2982 2 2407 248 39 19 chrX 96943603 96944244 -80029896 - MER21B LTR ERV1 -112 751 98 560 268 30 43 chrX 96944350 96944457 -80029683 - ERVL LTR ERVL -2207 3557 3450 1384 134 60 0 chrX 96944457 96944674 -80029466 - MER30 DNA MER1_type 0 230 1 560 268 30 43 chrX 96944674 96944801 -80029339 - ERVL LTR ERVL -2314 3450 3326 * 5418 255 40 22 chrX 96944796 96946422 -80027718 + HERVL40-F LTR ERVL 3769 5423 -341 1537 225 6 20 chrX 96946598 96946954 -80027186 - MLT1A1 LTR MaLR -14 351 1 541 303 0 0 chrX 96946955 96947117 -80027023 + HERVL40-F LTR ERVL 5594 5755 -9 1054 276 77 60 chrX 96947118 96947281 -80026859 + MLT2F LTR ERVL 1 160 -503 2154 107 62 39 chrX 96947281 96947637 -80026503 + THE1B LTR MaLR 1 364 0 11806 91 3 1 chrX 96947637 96949212 -80024928 + THE1B-int LTR MaLR 1 1578 -2 2006 144 51 20 chrX 96949214 96949567 -80024573 + THE1B LTR MaLR 1 364 0 1054 276 77 60 chrX 96949567 96949998 -80024142 + MLT2F LTR ERVL 160 609 -54 664 229 7 0 chrX 96950013 96950153 -80023987 - MLT1A1 LTR MaLR 0 365 225 1856 175 66 30 chrX 96950182 96950623 -80023517 + LTR2B LTR ERV1 34 490 0 553 238 30 59 chrX 96950668 96950870 -80023270 - MLT1A1 LTR MaLR -169 196 1 186 268 146 37 chrX 96951079 96951161 -80022979 - L3 LINE CR1 -1043 534 444 2220 121 0 3 chrX 96951883 96952181 -80021959 - AluSx SINE Alu -15 297 1 2349 88 10 0 chrX 96952241 96952548 -80021592 - AluSq SINE Alu -3 310 1 824 213 18 6 chrX 96953971 96954135 -80020005 + MER5A DNA MER1_type 24 189 0 222 292 58 42 chrX 96955002 96955122 -80019018 + L2 LINE L2 3180 3301 -12 257 331 54 34 chrX 96955347 96955495 -80018645 - MLT1-int LTR MaLR -522 849 699 1990 93 50 11 chrX 96955709 96956013 -80018127 - AluSq SINE Alu 0 313 1 479 247 45 34 chrX 96956078 96956168 -80017972 + MER115 DNA AcHobo 502 590 -103 3344 123 8 6 chrX 96956168 96956678 -80017462 - MER9 LTR ERVK 0 511 1 479 247 45 34 chrX 96956678 96956765 -80017375 + MER115 DNA AcHobo 590 681 -12 3436 237 78 31 chrX 96957614 96958687 -80015453 - ERVL LTR ERVL -2502 3262 2139 870 298 48 7 chrX 96958722 96959031 -80015109 - ERVL LTR ERVL -3723 2041 1720 2503 118 59 14 chrX 96959054 96959622 -80014518 - MER4E LTR ERV1 0 766 1 13836 102 51 18 chrX 96959622 96961855 -80012285 - MER4E-int LTR ERV1 0 6758 4452 4181 118 38 3 chrX 96961854 96962491 -80011649 - MER4E-int LTR ERV1 -2670 4088 3430 * 8186 109 67 24 chrX 96962490 96964569 -80009571 - MER4E-int LTR ERV1 -3659 3099 1418 438 20 0 0 chrX 96964583 96964634 -80009506 + (CA)n Simple_repeat Simple_repeat 2 52 0 3652 131 42 12 chrX 96964649 96965528 -80008612 - MER4E-int LTR ERV1 -5610 1148 208 942 96 50 56 chrX 96965528 96965971 -80008169 - MER4B LTR ERV1 0 610 1 1096 170 5 47 chrX 96965975 96966187 -80007953 - MER4E-int LTR ERV1 -6554 204 2 2109 92 0 0 chrX 96966195 96966489 -80007651 - MER4E LTR ERV1 -9 757 464 1586 108 113 0 chrX 96966490 96966721 -80007419 + AluSx SINE Alu 1 257 -55 6946 52 5 1 chrX 96967303 96968935 -80005205 - L1PA6 LINE L1 -4 6150 4512 1865 178 0 3 chrX 96968948 96969280 -80004860 - L1P3 LINE L1 -6130 331 1 1168 84 6 0 chrX 96969289 96969456 -80004684 - MLT2A1 LTR ERVL -83 361 194 3473 187 53 15 chrX 96969612 96970389 -80003751 - L1MB5 LINE L1 0 6174 5369 620 262 53 4 chrX 96970481 96970744 -80003396 + L1MDb LINE L1 844 1119 -5290 1011 257 63 6 chrX 96970746 96971112 -80003028 + L1ME3 LINE L1 5776 6162 0 823 249 29 66 chrX 96971556 96971906 -80002234 + L1MD1 LINE L1 64 400 -6140 6347 126 9 42 chrX 96972535 96973976 -80000164 + L1MA2 LINE L1 4923 6304 0 1792 239 73 29 chrX 96973973 96974393 -79999747 + L1MD1 LINE L1 998 1466 -5074 * 2203 99 3 0 chrX 96974393 96974704 -79999436 + AluSx SINE Alu 1 312 0 1792 239 73 29 chrX 96974704 96975007 -79999133 + L1MD1 LINE L1 1466 1754 -4786 2367 242 58 11 chrX 96975008 96975223 -79998917 + L1MD1 LINE L1 1780 1984 -4665 411 101 0 43 chrX 96975223 96975292 -79998848 + L1PA16 LINE L1 6089 6154 -12 2367 242 58 11 chrX 96975292 96975976 -79998164 + L1MD1 LINE L1 1984 2756 -3893 6433 22 0 0 chrX 96975978 96976752 -79997388 - L1PA3 LINE L1 -1303 4843 4067 7713 23 0 0 chrX 96976752 96978066 -79996074 + L1PA3 LINE L1 4841 6155 0 3126 232 38 16 chrX 96978092 96978505 -79995635 + L1MD1 LINE L1 2736 3139 -3401 1428 201 24 7 chrX 96978505 96978798 -79995342 + AluJo SINE Alu 1 298 -14 3126 232 38 16 chrX 96978798 96979500 -79994640 + L1MD1 LINE L1 3139 3875 -2665 12662 178 26 21 chrX 96979799 96980069 -79994071 + L1PA13 LINE L1 2 269 -6545 2344 113 0 0 chrX 96980069 96980378 -79993762 + AluSx SINE Alu 1 309 -3 12662 178 26 21 chrX 96980378 96980430 -79993710 + L1PA13 LINE L1 269 319 -6495 1225 39 11 17 chrX 96980430 96980609 -79993531 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 12662 178 26 21 chrX 96980609 96981153 -79992987 + L1PA13 LINE L1 319 859 -5955 258 32 0 0 chrX 96981153 96981184 -79992956 + (TG)n Simple_repeat Simple_repeat 1 31 0 12662 178 26 21 chrX 96981184 96986529 -79987611 + L1PA13 LINE L1 859 6173 -641 2262 124 30 25 chrX 96986529 96986891 -79987249 + THE1B LTR MaLR 1 364 0 12662 178 26 21 chrX 96986891 96987315 -79986825 + L1PA13 LINE L1 6173 6685 -129 4453 119 65 46 chrX 96987315 96988094 -79986046 + LTR25 LTR ERV1 1 794 0 12662 178 26 21 chrX 96988094 96988221 -79985919 + L1PA13 LINE L1 6685 6810 -4 448 313 39 39 chrX 96988259 96988492 -79985648 - MIR SINE MIR -28 234 2 5525 125 18 26 chrX 96988593 96989492 -79984648 + L1PA13 LINE L1 5272 6163 0 5217 221 73 24 chrX 96989556 96992169 -79981971 + L1MD1 LINE L1 3904 6636 0 1592 257 48 93 chrX 96992148 96992612 -79981528 + L1ME1 LINE L1 7 421 -5975 * 1704 180 30 0 chrX 96992612 96992912 -79981228 + AluJb SINE Alu 3 311 -1 1592 257 48 93 chrX 96992912 96993256 -79980884 + L1ME1 LINE L1 421 779 -5617 1284 203 21 0 chrX 96993256 96993492 -79980648 + MSTC LTR MaLR 186 426 -2 523 240 28 17 chrX 96993536 96993715 -79980425 + L1ME1 LINE L1 1000 1180 -5216 1421 261 82 77 chrX 96993751 96994562 -79979578 + L1ME1 LINE L1 1409 2228 -4168 7673 107 0 0 chrX 96994562 96996499 -79977641 + L1PA8 LINE L1 4238 6172 0 1421 261 82 77 chrX 96996499 96996748 -79977392 + L1ME1 LINE L1 2228 2474 -3922 * 2868 229 85 11 chrX 96996744 96998285 -79975855 + L1ME1 LINE L1 4576 6403 0 1437 186 16 80 chrX 96998312 96998699 -79975441 - MLT1A1 LTR MaLR 0 365 4 23 54 0 0 chrX 96999093 96999130 -79975010 + AT_rich Low_complexity Low_complexity 1 37 0 359 299 60 15 chrX 96999406 96999540 -79974600 + LTR33A LTR ERVL 60 199 -324 6377 120 90 9 chrX 97000342 97001480 -79972660 + Tigger3b DNA MER2_type 2 1231 0 396 206 114 2 chrX 97001758 97001883 -79972257 - MIR SINE MIR -65 143 32 2364 83 0 0 chrX 97002650 97002950 -79971190 - AluSg SINE Alu -10 300 1 300 154 0 0 chrX 97004211 97004263 -79969877 + GA-rich Low_complexity Low_complexity 3 54 0 2226 30 0 0 chrX 97004724 97004989 -79969151 + L1PA4 LINE L1 5888 6152 -3 887 134 0 0 chrX 97005569 97005696 -79968444 + FLAM_C SINE Alu 1 127 -16 1739 138 48 0 chrX 97006057 97006347 -79967793 + AluSx SINE Alu 2 304 0 852 103 0 8 chrX 97006858 97006984 -79967156 + L1PA10 LINE L1 6036 6160 -8 430 298 0 8 chrX 97007607 97007738 -79966402 - L1ME LINE L1 -556 5606 5477 27 0 0 0 chrX 97007772 97007799 -79966341 + AT_rich Low_complexity Low_complexity 1 27 0 5996 26 0 0 chrX 97007799 97008502 -79965638 - L1PA2 LINE L1 0 6155 5453 930 175 7 116 chrX 97008859 97009151 -79964989 + L1 LINE L1 5130 5389 -757 1246 121 39 0 chrX 97009151 97009357 -79964783 + L1MA9 LINE L1 6080 6293 -19 359 272 35 17 chrX 97010110 97010283 -79963857 + L1M4 LINE L1 4476 4651 -1495 1105 267 12 28 chrX 97011623 97011945 -79962195 + MER77 LTR ERV1 287 603 -2 224 207 0 73 chrX 97012097 97012179 -79961961 + GA-rich Low_complexity Low_complexity 3 78 0 261 0 0 0 chrX 97015455 97015484 -79958656 + (CA)n Simple_repeat Simple_repeat 2 30 0 774 254 9 47 chrX 97015500 97015732 -79958408 - MER58A DNA MER1_type -1 223 1 234 288 151 37 chrX 97016283 97016582 -79957558 + LTR50 LTR ERVL 216 548 -247 923 329 38 25 chrX 97116872 97117267 -79856873 + LTR16B LTR ERVL 1 400 -64 4140 180 56 40 chrX 97117267 97117834 -79856306 + L1MB8 LINE L1 4598 5154 -1024 1764 167 3 17 chrX 97117834 97118127 -79856013 + AluJo SINE Alu 1 289 -23 4140 180 56 40 chrX 97118127 97118594 -79855546 + L1MB8 LINE L1 5154 5612 -566 411 73 0 0 chrX 97118594 97118649 -79855491 + (TA)n Simple_repeat Simple_repeat 2 56 0 4140 180 56 40 chrX 97118649 97119167 -79854973 + L1MB8 LINE L1 5612 6177 -1 193 363 143 0 chrX 97119443 97119534 -79854606 + MIR SINE MIR 36 139 -69 363 23 0 0 chrX 97120274 97120318 -79853822 + (TG)n Simple_repeat Simple_repeat 1 44 0 1985 122 7 7 chrX 97120318 97120597 -79853543 - AluSx SINE Alu -33 279 1 2357 207 68 64 chrX 97121263 97121915 -79852225 + MLT1E1 LTR MaLR 1 654 0 198 260 0 20 chrX 97122534 97122584 -79851556 - L2 LINE L2 -4 3309 3261 1064 202 0 0 chrX 97122601 97122779 -79851361 + MER45A DNA AcHobo 1 178 0 467 276 0 37 chrX 97122812 97122946 -79851194 + MIR3 SINE MIR 30 158 -50 194 308 0 15 chrX 97122948 97123013 -79851127 - MER5A DNA MER1_type 0 189 126 267 283 65 65 chrX 97123156 97123294 -79850846 - L2 LINE L2 -215 3057 2920 218 209 0 0 chrX 97123421 97123464 -79850676 + (CATA)n Simple_repeat Simple_repeat 2 44 0 445 244 11 0 chrX 97123480 97123656 -79850484 + (CA)n Simple_repeat Simple_repeat 2 179 0 297 75 0 0 chrX 97124165 97124205 -79849935 + (CA)n Simple_repeat Simple_repeat 2 41 0 219 325 68 75 chrX 97125523 97125775 -79848365 + L2 LINE L2 2834 3083 -189 2544 52 0 3 chrX 97125919 97126229 -79847911 + AluY SINE Alu 2 310 -1 496 236 64 0 chrX 97126265 97126375 -79847765 + MIR SINE MIR 53 169 -93 223 349 73 9 chrX 97127126 97127235 -79846905 - MIR SINE MIR -73 135 20 2200 110 0 0 chrX 97127897 97128187 -79845953 - AluSx SINE Alu -10 302 13 9941 176 27 5 chrX 97128187 97130669 -79843471 + L1MA7 LINE L1 3252 5793 -498 332 119 17 0 chrX 97130672 97130731 -79843409 + (TA)n Simple_repeat Simple_repeat 1 60 0 2393 160 48 31 chrX 97130743 97131219 -79842921 + L1MA7 LINE L1 5783 6266 -25 227 105 53 0 chrX 97132302 97132340 -79841800 - MLT1D LTR MaLR -42 463 424 1303 234 63 46 chrX 97133226 97133640 -79840500 + L2 LINE L2 2891 3311 -2 523 286 91 11 chrX 97133957 97134132 -79840008 + MIR SINE MIR 12 200 -62 22 0 0 0 chrX 97134209 97134231 -79839909 + AT_rich Low_complexity Low_complexity 1 22 0 501 308 53 31 chrX 97134377 97134604 -79839536 + MIR SINE MIR 20 251 -11 714 294 55 49 chrX 97134757 97135124 -79839016 + LTR16A1 LTR ERVL 1 369 -88 1889 159 3 19 chrX 97135264 97135579 -79838561 - AluJb SINE Alu 0 312 3 906 130 0 14 chrX 97135907 97136045 -79838095 - FRAM SINE Alu 0 40 1 372 200 0 0 chrX 97136051 97136111 -79838029 - AluJ/FLAM SINE Alu -242 60 1 217 176 0 59 chrX 97136126 97136177 -79837963 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 668 292 60 9 chrX 97136659 97136892 -79837248 - MIR SINE MIR 0 262 18 231 250 0 17 chrX 97136985 97137045 -79837095 - L2 LINE L2 0 3313 3255 193 212 15 61 chrX 97137049 97137115 -79837025 + L2 LINE L2 2456 2518 -796 363 44 0 0 chrX 97137789 97137834 -79836306 + (CA)n Simple_repeat Simple_repeat 1 45 0 459 353 162 26 chrX 97138302 97139092 -79835048 - L2 LINE L2 -1 3271 2380 4623 31 2 0 chrX 97139310 97139860 -79834280 - L1PA4 LINE L1 0 6155 5605 11893 27 1 1 chrX 97139860 97141498 -79832642 + L1PA4 LINE L1 3971 5608 -547 232 295 16 0 chrX 97141628 97141689 -79832451 + MIR SINE MIR 84 145 -63 1439 165 96 34 chrX 97141745 97142036 -79832104 + AluJb SINE Alu 1 309 -3 6888 59 13 3 chrX 97142182 97143248 -79830892 - L1PA7 LINE L1 0 6154 5093 1996 119 3 7 chrX 97143248 97143533 -79830607 - AluSp SINE Alu -29 284 1 24 53 0 0 chrX 97143542 97143580 -79830560 + AT_rich Low_complexity Low_complexity 1 38 0 193 217 0 22 chrX 97143683 97143729 -79830411 + MIR3 SINE MIR 164 208 0 2738 149 15 2 chrX 97144931 97145386 -79828754 + LOR1b LTR ERV1 1 461 0 699 263 97 14 chrX 97145461 97145678 -79828462 - MIR SINE MIR 0 262 28 880 155 0 147 chrX 97146047 97146298 -79827842 + MER20 DNA MER1_type 2 215 -4 396 0 0 0 chrX 97146371 97146415 -79827725 + (ATG)n Simple_repeat Simple_repeat 1 44 0 679 270 49 35 chrX 97146482 97146708 -79827432 - MIR SINE MIR -8 254 26 845 240 43 35 chrX 97149446 97149704 -79824436 - MIR SINE MIR 0 262 3 2085 138 0 19 chrX 97149777 97150095 -79824045 + AluSx SINE Alu 1 312 0 513 238 193 37 chrX 97150280 97150633 -79823507 + L1ME4a LINE L1 5616 6023 -98 3083 48 0 0 chrX 97151649 97152028 -79822112 - L1PA4 LINE L1 0 6155 5777 2183 99 0 7 chrX 97152028 97152322 -79821818 - AluY SINE Alu -19 292 1 195 42 0 0 chrX 97152619 97152643 -79821497 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1913 220 235 42 chrX 97152983 97154003 -79820137 - L2 LINE L2 0 3313 2116 568 239 8 0 chrX 97154025 97154142 -79819998 - MER97a DNA MER1_type? -776 118 1 2098 135 0 10 chrX 97154838 97155150 -79818990 - AluSx SINE Alu -3 309 1 234 0 0 0 chrX 97156052 97156078 -79818062 + (TG)n Simple_repeat Simple_repeat 1 26 0 2335 68 0 0 chrX 97156078 97156358 -79817782 - AluY SINE Alu -31 280 1 283 311 144 59 chrX 97156954 97157511 -79816629 - L2 LINE L2 -722 2592 1989 325 206 0 0 chrX 97157521 97157584 -79816556 + L2 LINE L2 3251 3313 0 22 0 0 0 chrX 97159032 97159054 -79815086 + AT_rich Low_complexity Low_complexity 1 22 0 7003 131 18 7 chrX 97159305 97161502 -79812638 - L1MA2 LINE L1 0 6304 4085 198 279 27 72 chrX 97161731 97161842 -79812298 - MER5A DNA MER1_type 0 189 84 584 250 27 7 chrX 97162872 97163020 -79811120 - MIR SINE MIR -4 258 108 452 361 71 40 chrX 97163016 97163534 -79810606 - L2 LINE L2 -560 2754 2221 * 445 278 136 24 chrX 97163805 97163974 -79810166 - MER5A DNA MER1_type 0 189 2 1358 159 24 10 chrX 97163982 97164271 -79809869 - MER33 DNA MER1_type -2 322 30 450 249 118 59 chrX 97164528 97164697 -79809443 + MIR3 SINE MIR 16 194 -14 1903 172 39 9 chrX 97164967 97165305 -79808835 - MER7A DNA MER2_type 0 346 1 2034 113 3 0 chrX 97166549 97166832 -79807308 + AluSq SINE Alu 14 297 -16 2317 115 11 5 chrX 97166832 97167207 -79806933 + L1PA15-16 LINE L1 2517 2893 -4672 194 125 21 0 chrX 97167207 97167255 -79806885 + (TA)n Simple_repeat Simple_repeat 2 50 0 869 103 23 0 chrX 97167270 97167445 -79806695 + (TA)n Simple_repeat Simple_repeat 2 180 0 6266 192 23 13 chrX 97167466 97169717 -79804423 + L1PA15-16 LINE L1 2901 5161 -2404 1111 82 0 19 chrX 97169717 97169875 -79804265 + L1PA8 LINE L1 6008 6162 -10 22 35 0 0 chrX 97169917 97169946 -79804194 + AT_rich Low_complexity Low_complexity 1 29 0 6640 132 18 2 chrX 97169965 97171312 -79802828 + L1MA2 LINE L1 4936 6304 0 2098 123 0 0 chrX 97171442 97171727 -79802413 - AluSx SINE Alu -27 285 1 2183 65 0 48 chrX 97172157 97172447 -79801693 + AluY SINE Alu 1 276 -35 219 36 0 0 chrX 97172447 97172475 -79801665 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2333 123 22 3 chrX 97173434 97173791 -79800349 - THE1B LTR MaLR 0 364 1 198 0 0 0 chrX 97174981 97175003 -79799137 + (T)n Simple_repeat Simple_repeat 1 22 0 1534 160 72 36 chrX 97175309 97175671 -79798469 - THE1C LTR MaLR 0 375 1 222 91 0 0 chrX 97177471 97177504 -79796636 + (TA)n Simple_repeat Simple_repeat 2 34 0 1215 248 16 16 chrX 97178135 97178453 -79795687 - L1ME1 LINE L1 -37 6129 5812 5784 95 4 0 chrX 97178457 97179248 -79794892 - L1PA10 LINE L1 -2 6166 5373 4892 111 8 0 chrX 97179243 97179982 -79794158 + L1P LINE L1 4587 5331 -815 * 2177 213 59 16 chrX 97179987 97180685 -79793455 - L1ME1 LINE L1 -347 5819 5095 247 274 140 40 chrX 97180746 97180884 -79793256 + MIR SINE MIR 24 166 -62 181 282 42 42 chrX 97180872 97180943 -79793197 + L2 LINE L2 3185 3255 -17 * 195 276 53 0 chrX 97181069 97181145 -79792995 - MIR3 SINE MIR -8 200 121 207 0 0 0 chrX 97182368 97182391 -79791749 + (A)n Simple_repeat Simple_repeat 1 23 0 554 339 21 0 chrX 97184112 97184304 -79789836 + MER117 DNA MER1_type 2 197 0 1086 220 10 5 chrX 97184689 97184898 -79789242 + MER58A DNA MER1_type 15 224 0 405 330 33 22 chrX 97184913 97185095 -79789045 + MER5A DNA MER1_type 6 189 0 220 308 28 47 chrX 97186896 97187003 -79787137 - L2 LINE L2 -5 3308 3204 412 310 90 58 chrX 97187782 97188250 -79785890 - L2 LINE L2 0 3313 2831 479 238 18 73 chrX 97188336 97188500 -79785640 - L2 LINE L2 0 3313 3159 969 118 0 13 chrX 97189738 97189890 -79784250 - AluSp/q SINE Alu 0 313 164 679 111 0 10 chrX 97189985 97190084 -79784056 + MER4A LTR ERV1 1 98 -566 1963 122 3 22 chrX 97190084 97190436 -79783704 + MER4A LTR ERV1 261 664 0 2634 139 77 70 chrX 97190439 97191084 -79783056 + MER4A-int LTR ERV1 1 833 -5765 12003 108 47 25 chrX 97191084 97193082 -79781058 + MER4A-int LTR ERV1 4557 6596 -2 603 141 0 10 chrX 97193088 97193187 -79780953 + MER4A LTR ERV1 1 98 -566 1686 129 158 80 chrX 97193187 97193560 -79780580 + MER4A LTR ERV1 263 664 0 298 282 301 0 chrX 97194065 97194221 -79779919 + L3 LINE CR1 1331 1533 -44 267 330 40 20 chrX 97194279 97194379 -79779761 + MER5A DNA MER1_type 88 189 0 362 337 140 30 chrX 97196300 97196665 -79777475 - L2 LINE L2 -5 3308 2904 199 338 130 0 chrX 97196820 97196974 -79777166 - L2 LINE L2 0 3313 3140 2131 117 3 0 chrX 97197038 97197329 -79776811 - AluSx SINE Alu -20 292 1 691 285 31 10 chrX 97197941 97198134 -79776006 - MIR SINE MIR -34 228 32 312 314 151 48 chrX 97199670 97200095 -79774045 - L2 LINE L2 -108 3205 2825 2171 105 0 0 chrX 97200095 97200390 -79773750 + AluSg SINE Alu 1 295 -15 312 314 151 48 chrX 97200390 97200417 -79773723 - L2 LINE L2 -488 2825 2802 1537 184 16 6 chrX 97200417 97200738 -79773402 - MER33 DNA MER1_type 0 324 1 312 314 151 48 chrX 97200738 97200799 -79773341 - L2 LINE L2 -511 2802 2644 2006 212 42 24 chrX 97200803 97201299 -79772841 - MLT1D LTR MaLR 0 505 1 609 266 90 21 chrX 97201359 97201694 -79772446 - HAL1b LINE L1 0 1348 991 * 2577 174 68 30 chrX 97201682 97202180 -79771960 - L1MA6 LINE L1 0 6300 5774 306 0 0 0 chrX 97202180 97202214 -79771926 + (TA)n Simple_repeat Simple_repeat 1 34 0 2577 174 68 30 chrX 97202214 97202318 -79771822 - L1MA6 LINE L1 -526 5774 5675 * 4225 231 31 18 chrX 97202304 97203936 -79770204 - L1 LINE L1 -3099 4466 2807 937 303 207 21 chrX 97203976 97204600 -79769540 + L2 LINE L2 1807 2546 -768 516 72 0 0 chrX 97204644 97204713 -79769427 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 946 324 128 7 chrX 97204725 97205170 -79768970 + L2 LINE L2 2811 3309 -4 378 333 16 8 chrX 97205500 97205626 -79768514 - MIR3 SINE MIR -38 170 44 193 250 0 0 chrX 97208722 97208762 -79765378 + L2 LINE L2 3267 3306 -7 21 57 0 0 chrX 97212364 97212399 -79761741 + AT_rich Low_complexity Low_complexity 1 35 0 783 238 52 108 chrX 97213285 97213672 -79760468 + MLT1A1 LTR MaLR 1 365 0 188 338 0 42 chrX 97213703 97213774 -79760366 + L2 LINE L2 3204 3271 -1 542 332 55 61 chrX 97214371 97214807 -79759333 + L2 LINE L2 2750 3253 -19 195 132 0 79 chrX 97214774 97214812 -79759328 + MIR SINE MIR 216 250 -12 * 413 325 113 13 chrX 97214894 97215045 -79759095 - L2 LINE L2 0 3272 3107 203 320 30 30 chrX 97215593 97215693 -79758447 - L2 LINE L2 -10 3262 3163 24 0 0 0 chrX 97216351 97216375 -79757765 + AT_rich Low_complexity Low_complexity 1 24 0 240 357 112 23 chrX 97216815 97217162 -79756978 + L2 LINE L2 1531 1908 -1406 3362 126 10 0 chrX 97217173 97217671 -79756469 - MER1A DNA MER1_type -7 522 6 191 306 189 29 chrX 97217701 97217907 -79756233 + L2 LINE L2 1944 2182 -1132 * 223 269 93 9 chrX 97217906 97218014 -79756126 - L2 LINE L2 -1048 2266 2150 292 318 8 23 chrX 97218055 97218187 -79755953 + L2 LINE L2 2211 2340 -974 320 420 0 0 chrX 97218393 97218531 -79755609 + L2 LINE L2 2621 2758 -556 719 217 26 7 chrX 97218540 97218692 -79755448 - MER5A DNA MER1_type 0 189 35 230 307 54 60 chrX 97218713 97218879 -79755261 - L2 LINE L2 -816 2498 2334 25 0 0 0 chrX 97219132 97219157 -79754983 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 97219404 97219426 -79754714 + AT_rich Low_complexity Low_complexity 1 22 0 266 405 78 20 chrX 97219547 97220060 -79754080 - L2 LINE L2 -164 3108 2565 395 304 24 8 chrX 97220588 97220713 -79753427 + MIR SINE MIR 94 220 -42 3098 169 43 75 chrX 97220815 97221531 -79752609 + LTR8A LTR ERV1 34 726 -1 26 0 0 0 chrX 97222339 97222365 -79751775 + AT_rich Low_complexity Low_complexity 1 26 0 7200 13 0 0 chrX 97222365 97223183 -79750957 - L1PA3 LINE L1 -3 6152 5335 320 284 0 0 chrX 97224051 97224118 -79750022 - L2 LINE L2 0 3272 3206 295 244 30 84 chrX 97224288 97224419 -79749721 - L2 LINE L2 -556 2758 2635 398 331 0 15 chrX 97224651 97224781 -79749359 - MER94 DNA DNA -6 128 1 23 0 0 0 chrX 97225571 97225594 -79748546 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 97226135 97226164 -79747976 + (A)n Simple_repeat Simple_repeat 1 29 0 2468 74 3 0 chrX 97226342 97226654 -79747486 - AluSp SINE Alu 0 313 1 2478 70 0 0 chrX 97226988 97227288 -79746852 + AluSg SINE Alu 1 300 -10 393 361 17 0 chrX 97227584 97227703 -79746437 - MIR3 SINE MIR -54 154 34 25 31 0 0 chrX 97228229 97228261 -79745879 + AT_rich Low_complexity Low_complexity 1 32 0 674 271 5 37 chrX 97229047 97229235 -79744905 + MIR SINE MIR 12 193 -69 7137 161 11 12 chrX 97229235 97231360 -79742780 + L1MA4 LINE L1 3977 6102 -198 7616 24 0 0 chrX 97231388 97232711 -79741429 - L1PA4 LINE L1 0 6155 4832 1141 122 37 0 chrX 97232711 97232895 -79741245 + L1MA4 LINE L1 6090 6284 -16 219 245 0 0 chrX 97232918 97232967 -79741173 + MIR SINE MIR 213 261 -1 551 303 77 5 chrX 97233227 97233422 -79740718 + MIR SINE MIR 8 216 -46 422 272 29 10 chrX 97233425 97233528 -79740612 + L2 LINE L2 3192 3296 -17 386 286 25 8 chrX 97233915 97234034 -79740106 + MIR3 SINE MIR 15 135 -73 697 291 68 0 chrX 97234699 97234919 -79739221 - MIR SINE MIR -5 257 23 336 257 200 21 chrX 97235460 97235600 -79738540 - MIR3 SINE MIR -25 183 19 242 368 49 11 chrX 97236777 97236962 -79737178 + L2 LINE L2 3117 3308 -5 432 82 0 0 chrX 97237112 97237173 -79736967 + (CA)n Simple_repeat Simple_repeat 1 61 0 338 291 38 67 chrX 97237174 97237505 -79736635 + L1MC4a LINE L1 5738 6057 -1751 196 397 61 23 chrX 97238552 97238683 -79735457 - L2 LINE L2 -10 3262 3127 2235 94 3 3 chrX 97238994 97239291 -79734849 - AluSg SINE Alu -13 297 1 6019 176 8 46 chrX 97239373 97239551 -79734589 + L1PA13 LINE L1 4134 4317 -1846 2466 66 7 0 chrX 97239551 97239854 -79734286 - AluY SINE Alu -6 305 1 6019 176 8 46 chrX 97239854 97240376 -79733764 + L1PA13 LINE L1 4317 4858 -1305 2090 134 13 0 chrX 97240376 97240682 -79733458 - AluSq SINE Alu -1 312 3 6019 176 8 46 chrX 97240682 97242038 -79732102 + L1PA13 LINE L1 4858 6152 -11 2246 113 0 0 chrX 97242070 97242362 -79731778 - AluSx SINE Alu -15 297 6 303 341 85 31 chrX 97242370 97242499 -79731641 + L3 LINE CR1 1374 1509 -68 5751 112 14 22 chrX 97243053 97244308 -79729832 + L1PA15 LINE L1 4919 6165 0 5217 247 43 17 chrX 97244648 97246073 -79728067 + L1M3de LINE L1 935 2322 -4410 1554 191 71 76 chrX 97246073 97246507 -79727633 - MSTB1 LTR MaLR 0 432 1 5217 247 43 17 chrX 97246507 97248270 -79725870 + L1M3de LINE L1 2322 3857 -2875 2127 139 3 0 chrX 97248274 97248577 -79725563 + AluSq SINE Alu 1 304 -9 1013 153 13 0 chrX 97248577 97248727 -79725413 + AluSg/x SINE Alu 134 285 -27 3695 120 104 5 chrX 97248739 97249372 -79724768 - L1M1 LINE L1 -5036 2529 1834 2552 44 0 0 chrX 97249377 97249672 -79724468 + AluY SINE Alu 1 295 -16 1277 100 12 0 chrX 97249672 97249842 -79724298 + AluSc SINE Alu 132 303 -6 1581 219 92 48 chrX 97249842 97250541 -79723599 - L1M1 LINE L1 -5728 1837 14 276 290 0 14 chrX 97250854 97250923 -79723217 - MIR SINE MIR -73 189 122 315 0 0 0 chrX 97250983 97251018 -79723122 + (TG)n Simple_repeat Simple_repeat 1 35 0 320 283 71 9 chrX 97251447 97251560 -79722580 + MIR SINE MIR 120 239 -23 2151 289 72 27 chrX 97253986 97254732 -79719408 + L1M2b LINE L1 1 780 -6429 713 206 185 35 chrX 97254870 97255308 -79718832 + L1M2b LINE L1 1635 2250 -4959 7742 168 4 0 chrX 97255313 97256687 -79717453 - L1P LINE L1 -909 5237 3859 489 284 36 10 chrX 97256677 97257045 -79717095 - L1M4 LINE L1 -3043 3601 3137 * 423 0 0 0 chrX 97257109 97257156 -79716984 + (CA)n Simple_repeat Simple_repeat 2 48 0 1954 180 8 2 chrX 97257305 97257699 -79716441 - L1MB4 LINE L1 -1 6179 5784 210 138 52 0 chrX 97257701 97257759 -79716381 + (TA)n Simple_repeat Simple_repeat 2 62 0 2858 168 34 21 chrX 97257759 97258460 -79715680 - L1M4 LINE L1 -388 5792 5067 286 133 133 82 chrX 97258437 97258535 -79715605 + L1M4 LINE L1 5773 5875 -303 * 493 148 11 11 chrX 97258537 97258625 -79715515 - L1MB8 LINE L1 -77 6101 6014 2146 250 74 28 chrX 97258628 97259273 -79714867 - L1M4 LINE L1 -5869 673 16 237 163 0 0 chrX 97259314 97259363 -79714777 + (TG)n Simple_repeat Simple_repeat 2 50 0 412 281 16 16 chrX 97260418 97260546 -79713594 + CT-rich Low_complexity Low_complexity 4 131 0 328 233 27 0 chrX 97261165 97261238 -79712902 + MIR SINE MIR 179 253 -9 236 206 15 29 chrX 97261914 97261982 -79712158 + (TG)n Simple_repeat Simple_repeat 1 67 0 272 305 92 23 chrX 97263471 97263602 -79710538 + MIR3 SINE MIR 21 160 -48 243 79 0 0 chrX 97263607 97263645 -79710495 + (TC)n Simple_repeat Simple_repeat 1 38 0 321 89 0 0 chrX 97263646 97263691 -79710449 + (CA)n Simple_repeat Simple_repeat 1 45 0 263 215 127 38 chrX 97264063 97264142 -79709998 + L2 LINE L2 3203 3288 -25 767 205 99 0 chrX 97264280 97264441 -79709699 - MIR SINE MIR -13 249 73 1623 106 31 0 chrX 97264443 97264697 -79709443 - MER6 DNA MER2_type 0 865 604 2042 181 29 11 chrX 97264815 97265164 -79708976 - MER6 DNA MER2_type -510 355 1 1798 163 88 25 chrX 97266813 97267213 -79706927 - MSTC LTR MaLR -3 425 1 639 310 25 21 chrX 97267559 97267801 -79706339 - MLT1J LTR MaLR -11 500 258 415 329 0 46 chrX 97267922 97268074 -79706066 + MER5A DNA MER1_type 20 164 -25 1040 251 38 20 chrX 97268196 97268497 -79705643 - MLT1J1 LTR MaLR -141 309 6 899 211 12 0 chrX 97268515 97268676 -79705464 + MER45A DNA AcHobo 1 163 -15 2250 277 123 36 chrX 97268777 97269687 -79704453 + L3 LINE CR1 544 1532 -45 899 250 86 18 chrX 97269772 97269992 -79704148 + MIR SINE MIR 28 262 0 390 300 16 79 chrX 97270294 97270484 -79703656 - MIR SINE MIR -52 210 33 763 268 38 13 chrX 97271181 97271416 -79702724 - MIR SINE MIR -8 254 14 634 254 20 58 chrX 97272979 97273174 -79700966 + MIR SINE MIR 7 192 -70 409 306 8 30 chrX 97273180 97273314 -79700826 + MIR SINE MIR 21 151 -111 1450 221 62 60 chrX 97274026 97274529 -79699611 + MLT1D LTR MaLR 2 505 0 213 143 24 0 chrX 97274853 97274895 -79699245 + CT-rich Low_complexity Low_complexity 2 44 0 813 260 56 24 chrX 97274982 97275232 -79698908 + MIR SINE MIR 1 258 -4 421 319 43 21 chrX 97275230 97275411 -79698729 + MIR3 SINE MIR 6 191 -17 * 24 32 0 0 chrX 97278009 97278040 -79696100 + AT_rich Low_complexity Low_complexity 1 31 0 870 234 28 5 chrX 97278250 97278464 -79695676 + MER20 DNA MER1_type 1 219 0 236 192 26 51 chrX 97278571 97278649 -79695491 + A-rich Low_complexity Low_complexity 1 76 0 372 218 73 18 chrX 97278742 97278852 -79695288 + LTR67 LTR ERVL 432 547 -10 190 400 17 0 chrX 97279111 97279226 -79694914 - L2 LINE L2 -189 3083 2967 187 301 0 72 chrX 97279241 97279324 -79694816 + MIR SINE MIR 30 106 -102 2246 88 3 0 chrX 97279534 97279883 -79694257 + AluSp SINE Alu 1 350 0 219 276 0 17 chrX 97281399 97281457 -79692683 + MIR SINE MIR 160 216 -46 700 272 81 44 chrX 97281854 97282313 -79691827 - L1MC4a LINE L1 -1626 6182 5707 22 80 0 0 chrX 97284070 97284120 -79690020 + AT_rich Low_complexity Low_complexity 1 50 0 6058 101 6 3 chrX 97285388 97286264 -79687876 - L1MA3 LINE L1 0 6305 5428 315 0 0 0 chrX 97286811 97286846 -79687294 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 2387 90 0 0 chrX 97286889 97287189 -79686951 + AluY SINE Alu 3 302 -9 808 270 151 36 chrX 97288174 97288670 -79685470 + MLT1H1 LTR MaLR 3 555 0 2092 137 0 0 chrX 97289723 97290204 -79683936 - AluSx SINE Alu 0 481 1 411 326 78 0 chrX 97290774 97290903 -79683237 - L2 LINE L2 -2 3270 3132 201 133 0 44 chrX 97291263 97291308 -79682832 + (TTTTTA)n Simple_repeat Simple_repeat 3 45 0 772 20 16 3 chrX 97291311 97291419 -79682721 + L1PA5 LINE L1 5770 5880 -283 590 327 52 24 chrX 97292171 97292419 -79681721 - MIR SINE MIR -6 256 2 259 291 17 6 chrX 97292489 97292664 -79681476 + (TAA)n Simple_repeat Simple_repeat 2 178 0 180 234 0 0 chrX 97292666 97292713 -79681427 + (TAG)n Simple_repeat Simple_repeat 3 49 0 325 319 0 0 chrX 97292721 97292812 -79681328 - MIR SINE MIR -12 250 160 3906 189 44 20 chrX 97292831 97293678 -79680462 - L1MB8 LINE L1 -2 6176 5310 25 51 0 0 chrX 97294448 97294487 -79679653 + AT_rich Low_complexity Low_complexity 1 39 0 1022 173 0 28 chrX 97294753 97294932 -79679208 - AluJo SINE Alu -34 278 105 3442 117 22 38 chrX 97295858 97296441 -79677699 + MER4B LTR ERV1 1 574 -36 307 260 10 0 chrX 97297099 97297195 -79676945 - L1MA5A LINE L1 -3 6294 6198 650 152 0 0 chrX 97297195 97297300 -79676840 + L1M2 LINE L1 5412 5516 -781 * 6445 187 39 54 chrX 97297288 97298887 -79675253 + L1MB1 LINE L1 3334 4907 -1239 2141 141 3 26 chrX 97298888 97299229 -79674911 + MER1B DNA MER1_type 1 333 -6 2605 174 15 25 chrX 97299230 97300425 -79673715 + L1MB1 LINE L1 4907 6168 0 235 352 92 40 chrX 97300631 97300858 -79673282 + L2 LINE L2 2613 2851 -463 194 349 222 8 chrX 97301081 97301207 -79672933 + L2 LINE L2 3117 3269 -3 277 184 61 0 chrX 97301419 97301468 -79672672 + Alu SINE Alu 2 53 -247 502 219 68 26 chrX 97301637 97301829 -79672311 + L1MC4a LINE L1 1387 1586 -4810 1143 153 74 12 chrX 97301830 97302072 -79672068 + LTR38B LTR ERV1 354 610 0 1627 283 54 33 chrX 97302073 97302883 -79671257 + L1MC4a LINE L1 1585 2411 -3985 2602 218 49 48 chrX 97302902 97303711 -79670429 + L1MC4a LINE L1 4133 4942 -1273 473 290 37 37 chrX 97304420 97304582 -79669558 + MIR SINE MIR 3 164 -98 805 0 0 0 chrX 97304583 97304751 -79669389 + AluYa5/8 SINE Alu 194 361 0 213 171 0 0 chrX 97304752 97304793 -79669347 + MIR SINE MIR 151 191 -71 191 268 0 0 chrX 97305145 97305186 -79668954 + L2 LINE L2 3186 3226 -46 260 355 45 36 chrX 97305352 97305823 -79668317 - L2 LINE L2 -338 2976 2502 840 317 42 8 chrX 97306176 97306438 -79667702 - L2 LINE L2 -511 2803 2533 636 64 64 23 chrX 97306481 97306652 -79667488 + (TA)n Simple_repeat Simple_repeat 2 179 0 590 259 75 14 chrX 97306672 97306884 -79667256 - L2 LINE L2 -921 2393 2169 5686 160 21 12 chrX 97306884 97308748 -79665392 - L1PA16 LINE L1 -161 6005 4125 201 331 53 86 chrX 97308748 97308993 -79665147 - L2 LINE L2 -1400 1914 1678 371 289 16 86 chrX 97309002 97309087 -79665053 - L2 LINE L2 -1605 1709 1620 2619 46 0 0 chrX 97309087 97309393 -79664747 + AluY SINE Alu 1 306 -5 371 289 16 86 chrX 97309393 97309611 -79664529 - L2 LINE L2 -1694 1620 1427 641 293 19 0 chrX 97309697 97309854 -79664286 - MIR SINE MIR -88 174 15 311 361 89 11 chrX 97309871 97310051 -79664089 - L2 LINE L2 -1921 1393 1200 1195 224 33 39 chrX 97310440 97310775 -79663365 + L1MC4a LINE L1 5323 5655 -2222 1150 161 22 112 chrX 97310779 97311102 -79663038 + MER63B DNA MER1_type 4 297 -139 27 81 0 0 chrX 97311424 97311486 -79662654 + AT_rich Low_complexity Low_complexity 1 62 0 2753 246 49 9 chrX 97311489 97312224 -79661916 - L1ME1 LINE L1 -18 6148 5385 2215 210 56 40 chrX 97312245 97312873 -79661267 - L1ME1 LINE L1 -837 5309 4672 1617 93 12 4 chrX 97312878 97313124 -79661016 - L1MA2 LINE L1 0 6304 6057 748 222 0 0 chrX 97313134 97313287 -79660853 + MER63B DNA MER1_type 282 434 0 441 288 141 0 chrX 97313320 97313504 -79660636 + L1MC4a LINE L1 5686 5895 -1982 2608 231 36 6 chrX 97313516 97314148 -79659992 + L1MD2 LINE L1 5699 6349 -10 2405 88 0 0 chrX 97314203 97314511 -79659629 - AluSg SINE Alu 0 310 3 205 167 0 0 chrX 97314548 97314584 -79659556 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 1517 282 158 16 chrX 97314598 97315434 -79658706 + L1MC4a LINE L1 5982 6936 -941 * 6686 134 29 3 chrX 97315418 97316978 -79657162 + L1MA2 LINE L1 4705 6304 0 31 26 0 0 chrX 97316978 97317016 -79657124 + AT_rich Low_complexity Low_complexity 1 38 0 3849 157 55 37 chrX 97317016 97317829 -79656311 + L1MB3 LINE L1 5319 6146 -37 272 163 0 0 chrX 97317825 97317868 -79656272 + L1ME3 LINE L1 6090 6132 -30 * 2318 242 75 57 chrX 97317920 97318391 -79655749 + L1MC4 LINE L1 7087 7548 -494 329 71 18 18 chrX 97318391 97318447 -79655693 + L1MA9 LINE L1 6257 6312 0 2318 242 75 57 chrX 97318447 97318913 -79655227 + L1MC4 LINE L1 7548 8041 -1 23 33 0 0 chrX 97318923 97318953 -79655187 + AT_rich Low_complexity Low_complexity 1 30 0 239 373 0 0 chrX 97319015 97319090 -79655050 + MIR3 SINE MIR 7 81 -127 * 269 250 0 112 chrX 97319082 97319198 -79654942 + MIR SINE MIR 104 206 -56 329 0 24 0 chrX 97319951 97319992 -79654148 + (CA)n Simple_repeat Simple_repeat 2 43 0 200 307 53 26 chrX 97320360 97320474 -79653666 + MIR SINE MIR 73 189 -73 461 288 118 19 chrX 97321812 97322024 -79652116 + L1MC4 LINE L1 7784 8016 -26 740 269 66 28 chrX 97322449 97322661 -79651479 - MIR SINE MIR -1 261 42 791 303 44 0 chrX 97323960 97324188 -79649952 - MIR SINE MIR -18 244 7 680 243 6 17 chrX 97324658 97324835 -79649305 + MER5B DNA MER1_type 4 178 0 25 31 0 0 chrX 97325474 97325506 -79648634 + AT_rich Low_complexity Low_complexity 1 32 0 1273 129 35 8 chrX 97325600 97325899 -79648241 - THE1C LTR MaLR -1 374 1 2328 69 6 31 chrX 97326179 97326498 -79647642 + AluY SINE Alu 1 311 0 251 114 0 0 chrX 97326521 97326556 -79647584 + U2 snRNA snRNA 1 35 -153 388 252 27 9 chrX 97327543 97327654 -79646486 + MER103 DNA DNA 2 114 -52 1296 220 122 25 chrX 97327708 97328126 -79646014 + MER110A LTR ERV1 41 477 -1 207 283 0 0 chrX 97328198 97328244 -79645896 + (TATG)n Simple_repeat Simple_repeat 2 47 0 551 285 13 20 chrX 97328288 97328439 -79645701 + MIR3 SINE MIR 22 171 -37 225 228 38 0 chrX 97329340 97329419 -79644721 + (TTCA)n Simple_repeat Simple_repeat 3 84 0 189 0 0 0 chrX 97329741 97329762 -79644378 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 288 278 136 12 chrX 97330544 97330706 -79643434 + L2 LINE L2 3132 3313 0 187 384 0 0 chrX 97332978 97333051 -79641089 - MIR SINE MIR -102 160 88 6948 62 1 1 chrX 97333438 97334645 -79639495 + L1PA7 LINE L1 4939 6145 -9 1425 207 137 29 chrX 97336474 97336928 -79637212 - MLT1D LTR MaLR -2 503 1 228 184 0 0 chrX 97337083 97337132 -79637008 + (CA)n Simple_repeat Simple_repeat 2 50 0 231 276 66 0 chrX 97337147 97337223 -79636917 + MER103 DNA DNA 3 83 -83 1487 172 28 31 chrX 97337243 97337534 -79636606 - AluJo SINE Alu -22 290 1 21 36 0 0 chrX 97337889 97337917 -79636223 + AT_rich Low_complexity Low_complexity 1 28 0 880 283 70 24 chrX 97338088 97338417 -79635723 + L2 LINE L2 2970 3313 0 199 264 55 66 chrX 97338415 97338506 -79635634 - MIR SINE MIR -115 147 58 * 25 0 0 0 chrX 97339216 97339241 -79634899 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 97339666 97339688 -79634452 + AT_rich Low_complexity Low_complexity 1 22 0 339 296 17 17 chrX 97340551 97340666 -79633474 + MIR3 SINE MIR 83 197 -11 551 269 144 25 chrX 97340769 97341233 -79632907 + MLT1H LTR MaLR 39 555 0 185 321 80 18 chrX 97341234 97341346 -79632794 + L2 LINE L2 2401 2519 -795 * 343 354 0 0 chrX 97341338 97341434 -79632706 + L2 LINE L2 3187 3282 -31 256 330 68 0 chrX 97341475 97341563 -79632577 + L2 LINE L2 2547 2640 -674 406 191 0 12 chrX 97341575 97341659 -79632481 + L1MD3 LINE L1 7903 7985 -10 437 346 89 48 chrX 97341674 97342211 -79631929 + L2 LINE L2 2705 3312 -1 1932 200 68 14 chrX 97343364 97343804 -79630336 + MLT1C LTR MaLR 1 464 -3 852 236 137 144 chrX 97344754 97345318 -79628822 + L3 LINE CR1 886 1445 -132 546 306 149 0 chrX 97345434 97345749 -79628391 + MLT1J2 LTR MaLR 66 441 -9 1329 213 0 0 chrX 97345770 97346038 -79628102 - AluJb SINE Alu 0 312 45 5729 111 27 3 chrX 97346066 97347364 -79626776 + L1PA13 LINE L1 4836 6163 0 973 321 122 53 chrX 97348150 97349182 -79624958 + L2 LINE L2 1614 2738 -576 1870 180 0 3 chrX 97349182 97349482 -79624658 + AluJb SINE Alu 1 299 -13 973 321 122 53 chrX 97349482 97349617 -79624523 + L2 LINE L2 2738 2862 -452 846 247 32 27 chrX 97349711 97349930 -79624210 - MER58A DNA MER1_type -4 220 1 523 230 70 37 chrX 97350959 97351146 -79622994 + MLT1J LTR MaLR 303 495 -16 480 282 16 0 chrX 97351329 97351453 -79622687 + MIR3 SINE MIR 83 208 0 4451 90 37 8 chrX 97351896 97352564 -79621576 + L1PB2 LINE L1 5461 6148 -3 1127 275 37 27 chrX 97352777 97353180 -79620960 - MLT1I LTR MaLR -2 407 1 254 298 107 0 chrX 97353188 97353272 -79620868 + MIR SINE MIR 31 123 -85 215 136 0 68 chrX 97354395 97354439 -79619701 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 180 152 0 0 chrX 97354440 97354473 -79619667 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chrX 97354748 97354769 -79619371 + AT_rich Low_complexity Low_complexity 1 21 0 251 355 20 7 chrX 97356112 97356264 -79617876 + L2 LINE L2 2416 2569 -745 285 172 0 0 chrX 97356278 97356342 -79617798 + CT-rich Low_complexity Low_complexity 2 65 0 21 36 0 0 chrX 97357180 97357208 -79616932 + AT_rich Low_complexity Low_complexity 1 28 0 229 259 0 0 chrX 97357673 97357739 -79616401 + GA-rich Low_complexity Low_complexity 1 108 0 1888 177 61 6 chrX 97358272 97358617 -79615523 + MLT1A1 LTR MaLR 1 364 -1 549 280 119 21 chrX 97358802 97359038 -79615102 + MIR SINE MIR 1 259 -3 915 244 107 4 chrX 97359186 97359420 -79614720 + MIR SINE MIR 3 260 -2 887 226 73 56 chrX 97359424 97359712 -79614428 + L2 LINE L2 3021 3313 0 393 22 0 0 chrX 97359982 97360028 -79614112 + (TG)n Simple_repeat Simple_repeat 2 47 0 1103 121 39 0 chrX 97360028 97360210 -79613930 - L1MA7 LINE L1 -2 6289 6101 225 125 25 0 chrX 97360242 97360282 -79613858 - L1MA7 LINE L1 -185 6106 6066 487 196 31 0 chrX 97361526 97361623 -79612517 - L1MA7 LINE L1 -419 5881 5782 203 149 54 0 chrX 97361644 97361718 -79612422 + (TA)n Simple_repeat Simple_repeat 1 78 0 330 111 0 0 chrX 97361747 97361801 -79612339 + L1MA5 LINE L1 6243 6296 -4 2026 123 3 13 chrX 97361822 97362131 -79612009 + AluSq SINE Alu 4 309 -4 700 228 69 89 chrX 97364199 97364445 -79609695 - MIR SINE MIR -21 241 1 21 36 0 0 chrX 97365869 97365897 -79608243 + AT_rich Low_complexity Low_complexity 1 28 0 1099 320 32 41 chrX 97367025 97367610 -79606530 + L1MEc LINE L1 37 616 -5780 1072 281 79 12 chrX 97367612 97368159 -79605981 + L1MEc LINE L1 666 1422 -4974 27 49 0 0 chrX 97368168 97368209 -79605931 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chrX 97368847 97368893 -79605247 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chrX 97368929 97368952 -79605188 + AT_rich Low_complexity Low_complexity 1 23 0 1165 250 38 34 chrX 97369752 97370139 -79604001 - MLT1J1 LTR MaLR -1 445 1 275 254 0 0 chrX 97370213 97370268 -79603872 - L2 LINE L2 -8 3305 3251 2549 40 0 3 chrX 97370419 97370716 -79603424 - AluY SINE Alu -14 297 2 22 56 0 0 chrX 97370960 97370996 -79603144 + AT_rich Low_complexity Low_complexity 1 36 0 241 273 45 73 chrX 97371403 97371513 -79602627 + MIR SINE MIR 17 123 -85 255 31 0 0 chrX 97371559 97371591 -79602549 + (TATG)n Simple_repeat Simple_repeat 1 32 0 249 200 106 35 chrX 97371692 97371777 -79602363 - L1ME4a LINE L1 -77 6044 5954 215 254 0 56 chrX 97372591 97372662 -79601478 + L3b LINE CR1 1134 1200 -383 446 331 94 20 chrX 97372885 97373139 -79601001 - LTR16A LTR ERVL -171 279 7 185 350 0 50 chrX 97373457 97373557 -79600583 + L3b LINE CR1 1294 1388 -195 658 274 146 0 chrX 97373678 97373904 -79600236 - MIR SINE MIR -2 260 2 186 364 0 18 chrX 97373904 97373958 -79600182 + L3 LINE CR1 1268 1320 -257 643 320 123 45 chrX 97373979 97374426 -79599714 + L2 LINE L2 2805 3286 -27 294 356 0 0 chrX 97374518 97374591 -79599549 + L3 LINE CR1 1406 1478 -99 983 258 118 47 chrX 97374616 97375101 -79599039 + MLT1H LTR MaLR 21 539 -10 194 299 45 0 chrX 97375136 97375203 -79598937 + MIR3 SINE MIR 139 208 0 432 308 110 4 chrX 97426643 97426906 -79547234 + L1ME4a LINE L1 5823 6113 -8 21 0 0 0 chrX 97427321 97427342 -79546798 + AT_rich Low_complexity Low_complexity 1 21 0 486 324 84 17 chrX 97428360 97428598 -79545542 + MIR SINE MIR 2 255 -7 222 62 0 0 chrX 97429329 97429361 -79544779 - L2 LINE L2 0 3313 3282 2115 60 0 0 chrX 97430017 97430282 -79543858 + L1PA3 LINE L1 5890 6154 -1 5728 111 27 3 chrX 97431689 97432987 -79541153 + L1PA13 LINE L1 4836 6163 0 989 321 122 53 chrX 97433773 97434805 -79539335 + L2 LINE L2 1614 2738 -576 1843 180 0 3 chrX 97434805 97435105 -79539035 + AluJb SINE Alu 1 299 -13 989 321 122 53 chrX 97435105 97435240 -79538900 + L2 LINE L2 2738 2862 -452 849 247 32 27 chrX 97435334 97435553 -79538587 - MER58A DNA MER1_type -4 220 1 522 230 70 37 chrX 97436582 97436769 -79537371 + MLT1J LTR MaLR 303 495 -16 482 282 16 0 chrX 97436952 97437076 -79537064 + MIR3 SINE MIR 83 208 0 4445 90 37 8 chrX 97437519 97438187 -79535953 + L1PB2 LINE L1 5461 6148 -3 1123 275 37 27 chrX 97438400 97438803 -79535337 - MLT1I LTR MaLR -2 407 1 251 274 119 12 chrX 97438811 97438895 -79535245 + MIR SINE MIR 31 123 -85 215 136 0 68 chrX 97440018 97440062 -79534078 + (TCTCTG)n Simple_repeat Simple_repeat 4 44 0 180 152 0 0 chrX 97440063 97440096 -79534044 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chrX 97440371 97440392 -79533748 + AT_rich Low_complexity Low_complexity 1 21 0 251 355 20 7 chrX 97441735 97441887 -79532253 + L2 LINE L2 2416 2569 -745 285 172 0 0 chrX 97441901 97441965 -79532175 + CT-rich Low_complexity Low_complexity 2 65 0 21 36 0 0 chrX 97442803 97442831 -79531309 + AT_rich Low_complexity Low_complexity 1 28 0 229 259 0 0 chrX 97443296 97443362 -79530778 + GA-rich Low_complexity Low_complexity 1 108 0 1888 177 61 6 chrX 97443895 97444240 -79529900 + MLT1A1 LTR MaLR 1 364 -1 549 280 119 21 chrX 97444425 97444661 -79529479 + MIR SINE MIR 1 259 -3 915 244 107 4 chrX 97444809 97445043 -79529097 + MIR SINE MIR 3 260 -2 887 226 73 56 chrX 97445047 97445335 -79528805 + L2 LINE L2 3021 3313 0 393 22 0 0 chrX 97445605 97445651 -79528489 + (TG)n Simple_repeat Simple_repeat 2 47 0 1103 121 39 0 chrX 97445651 97445833 -79528307 - L1MA7 LINE L1 -2 6289 6101 225 125 25 0 chrX 97445865 97445905 -79528235 - L1MA7 LINE L1 -185 6106 6066 487 196 31 0 chrX 97447149 97447246 -79526894 - L1MA7 LINE L1 -419 5881 5782 203 149 54 0 chrX 97447267 97447341 -79526799 + (TA)n Simple_repeat Simple_repeat 1 78 0 330 111 0 0 chrX 97447370 97447424 -79526716 + L1MA5 LINE L1 6243 6296 -4 2026 123 3 13 chrX 97447445 97447754 -79526386 + AluSq SINE Alu 4 309 -4 700 228 69 89 chrX 97449822 97450068 -79524072 - MIR SINE MIR -21 241 1 21 36 0 0 chrX 97451492 97451520 -79522620 + AT_rich Low_complexity Low_complexity 1 28 0 1099 320 32 41 chrX 97452648 97453233 -79520907 + L1MEc LINE L1 37 616 -5780 1072 281 79 12 chrX 97453235 97453782 -79520358 + L1MEc LINE L1 666 1422 -4974 27 49 0 0 chrX 97453791 97453832 -79520308 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chrX 97454470 97454516 -79519624 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chrX 97454552 97454575 -79519565 + AT_rich Low_complexity Low_complexity 1 23 0 1165 250 38 34 chrX 97455375 97455762 -79518378 - MLT1J1 LTR MaLR -1 445 1 275 254 0 0 chrX 97455836 97455891 -79518249 - L2 LINE L2 -8 3305 3251 2549 40 0 3 chrX 97456042 97456339 -79517801 - AluY SINE Alu -14 297 2 22 56 0 0 chrX 97456583 97456619 -79517521 + AT_rich Low_complexity Low_complexity 1 36 0 241 273 45 73 chrX 97457026 97457136 -79517004 + MIR SINE MIR 17 123 -85 255 31 0 0 chrX 97457182 97457214 -79516926 + (TATG)n Simple_repeat Simple_repeat 1 32 0 249 200 106 35 chrX 97457315 97457400 -79516740 - L1ME4a LINE L1 -77 6044 5954 215 254 0 56 chrX 97458214 97458285 -79515855 + L3b LINE CR1 1134 1200 -383 446 331 94 20 chrX 97458508 97458762 -79515378 - LTR16A LTR ERVL -171 279 7 185 350 0 50 chrX 97459080 97459180 -79514960 + L3b LINE CR1 1294 1388 -195 658 274 146 0 chrX 97459301 97459527 -79514613 - MIR SINE MIR -2 260 2 186 364 0 18 chrX 97459527 97459581 -79514559 + L3 LINE CR1 1268 1320 -257 643 320 123 45 chrX 97459602 97460049 -79514091 + L2 LINE L2 2805 3286 -27 294 356 0 0 chrX 97460141 97460214 -79513926 + L3 LINE CR1 1406 1478 -99 983 258 118 47 chrX 97460239 97460724 -79513416 + MLT1H LTR MaLR 21 539 -10 194 299 45 0 chrX 97460759 97460826 -79513314 + MIR3 SINE MIR 139 208 0 925 176 59 44 chrX 97461662 97461866 -79512274 - MER20 DNA MER1_type 0 219 13 1987 109 22 0 chrX 97462270 97462590 -79511550 - L1MA2 LINE L1 -9 6295 5969 616 198 122 27 chrX 97463409 97463631 -79510509 - LTR37A LTR ERV1 -14 412 170 2499 233 34 52 chrX 97463753 97464044 -79510096 - MER31-int LTR ERV1 -644 4292 3997 2210 91 3 13 chrX 97464044 97464351 -79509789 - AluSc SINE Alu -5 304 1 2499 233 34 52 chrX 97464351 97464805 -79509335 - MER31-int LTR ERV1 -939 3997 3561 2141 166 33 6 chrX 97464805 97465441 -79508699 - MER39 LTR ERV1 0 707 1 2063 139 3 0 chrX 97465528 97465822 -79508318 + AluSq SINE Alu 1 295 -18 354 178 50 59 chrX 97465943 97466044 -79508096 - MER31-int LTR ERV1 -1648 3288 3189 613 206 9 90 chrX 97466616 97466849 -79507291 - MER31-int LTR ERV1 -1870 3066 2853 258 281 31 10 chrX 97467112 97467208 -79506932 - MER31-int LTR ERV1 -2340 2596 2499 242 246 0 18 chrX 97467435 97467492 -79506648 + Charlie1 DNA MER1_type 40 95 -2666 * 592 211 68 37 chrX 97467476 97467666 -79506474 + Charlie1 DNA MER1_type 2551 2746 -15 566 185 25 25 chrX 97467929 97468086 -79506054 - MER31-int LTR ERV1 -3021 1915 1759 38016 85 7 9 chrX 97468116 97474276 -79499864 + L1PA6 LINE L1 11 6149 -5 33 0 0 0 chrX 97474276 97474309 -79499831 + AT_rich Low_complexity Low_complexity 1 33 0 1454 164 152 12 chrX 97474868 97475210 -79498930 - MLT1B LTR MaLR 0 390 1 673 192 177 70 chrX 97475683 97476068 -79498072 - LTR37A LTR ERV1 0 426 1 569 257 37 0 chrX 97476270 97476406 -79497734 - MIR SINE MIR -51 211 71 352 349 62 0 chrX 97476518 97476647 -79497493 - L2 LINE L2 -20 3252 3116 341 295 36 62 chrX 97476723 97476916 -79497224 - L2 LINE L2 -467 2847 2660 378 159 177 35 chrX 97476962 97477075 -79497065 - MLT1H LTR MaLR -25 524 396 2500 181 13 59 chrX 97477166 97477283 -79496857 + MLT1D LTR MaLR 1 122 -383 2464 150 26 12 chrX 97477283 97477703 -79496437 + MSTB LTR MaLR 1 426 0 2500 181 13 59 chrX 97477703 97478114 -79496026 + MLT1D LTR MaLR 122 505 0 837 209 33 30 chrX 97478114 97478326 -79495814 - MLT1H LTR MaLR -296 253 1 342 359 32 0 chrX 97478326 97478482 -79495658 - L2 LINE L2 -678 2636 2476 497 237 110 13 chrX 97478485 97478630 -79495510 - MIR SINE MIR -68 140 37 187 159 0 91 chrX 97479509 97479553 -79494587 + MIR SINE MIR 223 262 0 627 303 23 50 chrX 97479689 97479950 -79494190 - MIR SINE MIR -1 261 8 2117 196 23 28 chrX 97480893 97481321 -79492819 - MSTB LTR MaLR 0 426 1 186 255 0 0 chrX 97482203 97482254 -79491886 + (CAT)n Simple_repeat Simple_repeat 2 52 0 1476 273 141 2 chrX 97482298 97482789 -79491351 + MER69 DNA AcHobo 1 559 -1967 1892 182 45 17 chrX 97482840 97483306 -79490834 + MER69 DNA AcHobo 2046 2524 -2 483 266 43 43 chrX 97483387 97483571 -79490569 - L2 LINE L2 0 3313 3130 216 67 0 0 chrX 97485657 97485687 -79488453 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 377 324 27 39 chrX 97486607 97486795 -79487345 - MIR SINE MIR -50 212 20 1025 216 19 0 chrX 97487160 97487373 -79486767 - MER20 DNA MER1_type -1 218 2 445 260 51 47 chrX 97487556 97487739 -79486401 + MIR3 SINE MIR 1 183 -25 299 314 75 38 chrX 97488042 97488201 -79485939 - L2 LINE L2 -1 3271 3107 22 35 0 0 chrX 97488298 97488327 -79485813 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chrX 97488566 97488606 -79485534 + AT_rich Low_complexity Low_complexity 1 40 0 1440 55 6 0 chrX 97488669 97488852 -79485288 - L1PA10 LINE L1 0 6168 5985 196 109 22 43 chrX 97489239 97489285 -79484855 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 207 211 0 0 chrX 97489309 97489347 -79484793 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 268 286 92 20 chrX 97489807 97489905 -79484235 + L2 LINE L2 3163 3267 -5 192 339 24 55 chrX 97491471 97491598 -79482542 - L2 LINE L2 -12 3301 3179 467 330 65 0 chrX 97491612 97491812 -79482328 + MIR SINE MIR 2 214 -48 227 356 30 0 chrX 97491915 97492016 -79482124 - L2 LINE L2 -214 3058 2955 392 281 33 20 chrX 97493559 97493712 -79480428 - MIR3 SINE MIR -15 193 39 219 69 0 0 chrX 97494041 97494070 -79480070 + (CAA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chrX 97494408 97494430 -79479710 + (T)n Simple_repeat Simple_repeat 1 22 0 303 289 39 10 chrX 97494950 97495054 -79479086 + L1MC4 LINE L1 6597 6703 -1339 1383 233 53 37 chrX 97495225 97495602 -79478538 - MSTD LTR MaLR -2 394 12 2736 246 141 36 chrX 97495602 97496440 -79477700 - MSTD-int LTR MaLR -3 1732 807 1664 157 22 22 chrX 97496442 97496761 -79477379 - THE1C LTR MaLR 0 375 57 5143 207 60 101 chrX 97496761 97498485 -79475655 - THE1C-int LTR MaLR -57 1594 5 1477 208 77 21 chrX 97498491 97498866 -79475274 - MSTD LTR MaLR 0 396 1 183 225 28 113 chrX 97499029 97499100 -79475040 - L3 LINE CR1 -460 1117 1053 487 365 71 40 chrX 97499534 97500184 -79473956 + L1MEd LINE L1 67 736 -5383 930 182 33 37 chrX 97500524 97500738 -79473402 - MLT2B3 LTR ERVL -341 213 1 938 146 0 0 chrX 97501046 97501190 -79472950 + AluJb SINE Alu 159 302 -10 1052 226 169 60 chrX 97502559 97502688 -79471452 + L1MC4 LINE L1 5370 5483 -2559 1470 168 0 107 chrX 97502688 97503015 -79471125 + AluJb SINE Alu 1 292 -20 1052 226 169 60 chrX 97503015 97503470 -79470670 + L1MC4 LINE L1 5483 6018 -2024 * 1810 201 22 14 chrX 97503087 97503501 -79470639 + L1MB8 LINE L1 5635 6051 -127 772 164 7 0 chrX 97503505 97503645 -79470495 - L1MB5 LINE L1 -23 6151 6011 572 218 19 6 chrX 97503646 97503802 -79470338 + L1MB7 LINE L1 6027 6184 0 22 0 0 0 chrX 97503939 97503961 -79470179 + AT_rich Low_complexity Low_complexity 1 22 0 200 242 211 42 chrX 97504039 97504134 -79470006 - MIR3 SINE MIR -31 177 67 1856 238 41 27 chrX 97504255 97504817 -79469323 - L1ME1 LINE L1 -5 6161 5592 653 176 46 0 chrX 97504847 97504978 -79469162 - L1MC3 LINE L1 0 7785 7649 * 1010 161 18 6 chrX 97504977 97505185 -79468955 + L1ME LINE L1 5612 5821 -345 2160 119 0 0 chrX 97505185 97505480 -79468660 + AluSq SINE Alu 1 295 -18 279 250 0 0 chrX 97505481 97505569 -79468571 - L1MC3 LINE L1 -151 7634 7547 293 143 36 0 chrX 97505569 97505625 -79468515 - L1ME1 LINE L1 -564 5602 5545 244 167 0 0 chrX 97505976 97506012 -79468128 - Alu SINE Alu -133 169 134 2107 146 12 0 chrX 97506037 97506366 -79467774 - MER7A DNA MER2_type -1 345 15 715 156 21 80 chrX 97506751 97506903 -79467237 - MLT1A1 LTR MaLR -2 398 226 384 22 0 0 chrX 97508587 97508632 -79465508 + (TG)n Simple_repeat Simple_repeat 2 46 0 512 180 0 0 chrX 97508995 97509084 -79465056 + AluY SINE Alu 211 299 -12 3600 113 14 51 chrX 97512341 97512967 -79461173 - LTR26 LTR ERV1 0 603 1 239 227 0 0 chrX 97514140 97514184 -79459956 + Charlie4 DNA MER1_type 1 44 -1917 32 86 0 0 chrX 97514304 97514385 -79459755 + AT_rich Low_complexity Low_complexity 1 81 0 3883 188 77 17 chrX 97514626 97515609 -79458531 - Charlie1 DNA MER1_type 0 2761 1720 189 0 0 0 chrX 97515661 97515682 -79458458 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 406 375 12 12 chrX 97517182 97517342 -79456798 + MIR3 SINE MIR 20 179 -29 27 29 0 0 chrX 97518069 97518103 -79456037 + AT_rich Low_complexity Low_complexity 1 34 0 239 269 0 0 chrX 97518295 97518347 -79455793 - L2 LINE L2 0 3313 3262 22 35 0 0 chrX 97519131 97519160 -79454980 + AT_rich Low_complexity Low_complexity 1 29 0 321 246 148 8 chrX 97519554 97519676 -79454464 - L2 LINE L2 -1286 2028 1890 21 36 0 0 chrX 97520235 97520263 -79453877 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chrX 97520826 97520848 -79453292 + (A)n Simple_repeat Simple_repeat 1 22 0 1001 204 0 14 chrX 97521239 97521450 -79452690 - MER3 DNA MER1_type -1 208 1 7345 24 0 0 chrX 97521577 97522452 -79451688 - L1PA2 LINE L1 -853 5293 4419 7523 17 0 0 chrX 97522452 97523318 -79450822 + L1PA2 LINE L1 5287 6155 0 357 339 0 0 chrX 97525111 97525288 -79448852 + (ATG)n Simple_repeat Simple_repeat 3 179 0 315 0 0 0 chrX 97525715 97525750 -79448390 + (TA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chrX 97527118 97527140 -79447000 + AT_rich Low_complexity Low_complexity 1 22 0 14557 203 26 33 chrX 97527140 97533625 -79440515 - L1MA5 LINE L1 -8 6934 4 2786 165 60 14 chrX 97533656 97534225 -79439915 - L1MB4 LINE L1 0 6180 5586 384 321 108 103 chrX 97534479 97534897 -79439243 + L2 LINE L2 2853 3272 0 474 18 0 0 chrX 97534986 97535041 -79439099 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 544 317 62 17 chrX 97535595 97535835 -79438305 + MIR SINE MIR 4 254 -8 744 258 12 0 chrX 97536632 97536799 -79437341 - AluJb SINE Alu -10 302 134 1510 99 22 14 chrX 97537386 97537608 -79436532 + AluSg SINE Alu 51 274 -36 201 47 70 0 chrX 97537612 97537655 -79436485 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 51 0 0 chrX 97538711 97538750 -79435390 + AT_rich Low_complexity Low_complexity 1 39 0 2221 118 18 12 chrX 97540577 97540915 -79433225 - THE1C LTR MaLR 0 375 36 289 122 0 0 chrX 97541971 97542012 -79432128 - 5S rRNA rRNA -80 41 1 405 39 0 0 chrX 97543365 97543416 -79430724 + (GA)n Simple_repeat Simple_repeat 2 52 0 3532 195 74 43 chrX 97543569 97544448 -79429692 - L1MB8 LINE L1 -6 6172 5321 2150 110 0 20 chrX 97544448 97544748 -79429392 - AluSx SINE Alu -18 294 1 3532 195 74 43 chrX 97544748 97545538 -79428602 - L1MB8 LINE L1 -857 5321 4464 1154 142 16 32 chrX 97545991 97546215 -79427925 - AluJo SINE Alu 0 320 100 460 335 43 22 chrX 97546908 97547093 -79427047 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chrX 97548522 97548543 -79425597 + AT_rich Low_complexity Low_complexity 1 21 0 235 342 25 42 chrX 97548564 97548684 -79425456 + Charlie8 DNA MER1_type 129 246 -2171 2672 20 0 0 chrX 97548994 97549295 -79424845 + AluYa5 SINE Alu 10 310 -1 459 0 0 0 chrX 97552351 97552402 -79421738 + (TG)n Simple_repeat Simple_repeat 1 51 0 246 32 0 0 chrX 97552641 97552672 -79421468 + (GA)n Simple_repeat Simple_repeat 2 32 0 296 305 0 41 chrX 97555810 97555932 -79418208 + MIR SINE MIR 39 154 -66 45 19 0 0 chrX 97556324 97556376 -79417764 + AT_rich Low_complexity Low_complexity 1 52 0 618 232 37 0 chrX 97556686 97556850 -79417290 + L1MA8 LINE L1 6115 6284 -7 23 54 0 0 chrX 97556850 97556887 -79417253 + AT_rich Low_complexity Low_complexity 1 37 0 41663 45 20 3 chrX 97561510 97567561 -79406579 + L1PA4 LINE L1 7 6153 -2 263 0 81 0 chrX 97568435 97568472 -79405668 + T-rich Low_complexity Low_complexity 3 42 0 347 264 0 120 chrX 97569541 97569708 -79404432 + L2 LINE L2 466 612 -2702 1301 180 12 126 chrX 97569711 97570116 -79404024 - MLT1A1 LTR MaLR -3 362 4 515 253 72 78 chrX 97570120 97570456 -79403684 - LTR35 LTR ERV1 0 677 351 2341 92 3 0 chrX 97571008 97571311 -79402829 - AluSq SINE Alu -9 304 1 4818 230 27 56 chrX 97571378 97572429 -79401711 - MLT1A1-int LTR MaLR -26 1709 698 5923 101 36 1 chrX 97572429 97574034 -79400106 + L1PA11 LINE L1 4537 6173 -1 4818 230 27 56 chrX 97574034 97574235 -79399905 - MLT1A1-int LTR MaLR -1037 698 493 3430 225 81 45 chrX 97574254 97575362 -79398778 - L1MDb LINE L1 -4993 1416 317 525 312 74 10 chrX 97575535 97575737 -79398403 + LTR16C LTR ERVL 276 490 -1 878 286 112 23 chrX 97575738 97576218 -79397922 + L1P4 LINE L1 5307 5835 -326 453 286 0 32 chrX 97576619 97576773 -79397367 - L1ME3 LINE L1 -70 6092 5944 616 156 18 9 chrX 97577929 97578038 -79396102 + MER20 DNA MER1_type 16 125 -94 198 245 21 11 chrX 97578087 97578181 -79395959 + GA-rich Low_complexity Low_complexity 2 96 0 6089 100 8 12 chrX 97578287 97579688 -79394452 - L1PA13 LINE L1 -4 6810 5409 3686 97 52 9 chrX 97579688 97580244 -79393896 + LTR19B LTR ERV1 1 580 0 6089 100 8 12 chrX 97580244 97580530 -79393610 - L1PA13 LINE L1 -1405 5409 5123 11998 195 45 13 chrX 97580548 97583804 -79390336 - L1PA13 LINE L1 -2228 4569 1140 192 77 0 0 chrX 97583804 97583830 -79390310 + (CAG)n Simple_repeat Simple_repeat 1 26 0 11998 195 45 13 chrX 97583830 97585007 -79389133 - L1PA13 LINE L1 -5657 1140 1 599 292 50 54 chrX 97585132 97585346 -79388794 - MIR SINE MIR -13 249 35 311 104 15 45 chrX 97585346 97585413 -79388727 - L1MC2 LINE L1 -1 6343 6279 599 292 50 54 chrX 97585413 97585438 -79388702 - MIR SINE MIR -227 35 11 186 133 0 0 chrX 97585475 97585505 -79388635 + (CA)n Simple_repeat Simple_repeat 2 31 0 1301 180 33 117 chrX 97585604 97585998 -79388142 - MLT1A1 LTR MaLR -3 362 2 1032 265 81 45 chrX 97586032 97586454 -79387686 + MLT1J LTR MaLR 69 505 -6 3003 287 78 26 chrX 97587622 97588463 -79385677 - L2 LINE L2 -8 3305 2358 1629 167 17 21 chrX 97588463 97588751 -79385389 + AluJo SINE Alu 16 302 -10 3003 287 78 26 chrX 97588751 97589359 -79384781 - L2 LINE L2 -955 2358 1783 1739 246 67 23 chrX 97589593 97589908 -79384232 - L1MCb LINE L1 -2530 4034 3734 386 94 16 0 chrX 97589908 97589972 -79384168 + (CATTT)n Simple_repeat Simple_repeat 5 69 0 1739 246 67 23 chrX 97589972 97590360 -79383780 - L1MCb LINE L1 -2830 3734 3300 1996 130 34 0 chrX 97590415 97590707 -79383433 - AluSx SINE Alu -10 302 1 1228 220 82 8 chrX 97590710 97591195 -79382945 - L1MCb LINE L1 -3607 2957 2438 809 216 36 12 chrX 97591198 97591365 -79382775 - FRAM SINE Alu -10 166 1 1430 258 58 22 chrX 97591373 97592226 -79381914 - L1MCb LINE L1 -4271 2474 1389 589 137 0 11 chrX 97592232 97592327 -79381813 + MER4A LTR ERV1 5 98 -566 1692 139 6 24 chrX 97592327 97592679 -79381461 + MER4A LTR ERV1 261 664 0 1897 192 29 49 chrX 97592679 97593290 -79380850 - L1MCb LINE L1 -4864 1181 786 1272 244 35 43 chrX 97593300 97593875 -79380265 - L1M4 LINE L1 -1424 4722 4153 201 147 0 0 chrX 97593875 97593909 -79380231 + (TTCC)n Simple_repeat Simple_repeat 1 34 0 274 198 0 25 chrX 97593909 97593990 -79380150 - L1M4 LINE L1 -1951 4195 4117 246 32 0 0 chrX 97593991 97594022 -79380118 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 5207 3 0 0 chrX 97594022 97594595 -79379545 - L1PA2 LINE L1 -12 6143 5571 2711 13 0 0 chrX 97594597 97595026 -79379114 + L1PA2 LINE L1 5154 5582 -573 588 276 6 0 chrX 97595023 97595186 -79378954 - L1MCb LINE L1 -5246 799 636 * 470 154 45 0 chrX 97595224 97595334 -79378806 - L1MA7 LINE L1 0 6291 6177 1922 176 30 0 chrX 97595349 97595742 -79378398 - L1MA7 LINE L1 -239 6052 5648 1637 145 31 23 chrX 97595764 97596116 -79378024 + L1M2 LINE L1 5254 5608 -683 924 214 148 26 chrX 97596116 97596419 -79377721 - L1MCb LINE L1 -5398 647 308 1541 179 12 26 chrX 97596504 97596553 -79377587 - L1MB2 LINE L1 -2 6169 6121 1944 131 0 14 chrX 97596553 97596836 -79377304 - AluSx SINE Alu -13 299 21 1541 179 12 26 chrX 97596836 97597126 -79377014 - L1MB2 LINE L1 -50 6121 5835 6577 140 27 1 chrX 97597126 97599226 -79374914 + L1PA7 LINE L1 3811 6153 -1 5522 125 19 18 chrX 97599246 97599583 -79374557 + L1PA15 LINE L1 4992 5327 -838 2408 102 0 6 chrX 97599583 97599897 -79374243 + AluSx SINE Alu 1 312 0 276 30 0 0 chrX 97599897 97599930 -79374210 + (TA)n Simple_repeat Simple_repeat 1 33 0 5522 125 19 18 chrX 97599930 97600761 -79373379 + L1PA15 LINE L1 5326 6161 -4 3071 269 58 39 chrX 97600770 97601259 -79372881 - L2 LINE L2 -227 3086 2608 775 96 112 0 chrX 97601259 97601384 -79372756 - MER85 DNA T2_type 0 139 1 3071 269 58 39 chrX 97601384 97602028 -79372112 - L2 LINE L2 -705 2608 1934 404 191 21 0 chrX 97602028 97602122 -79372018 + L1ME2 LINE L1 5774 5869 -295 1413 201 36 10 chrX 97602142 97602451 -79371689 - LTR53 LTR ERVL -14 505 189 21781 44 0 1 chrX 97602615 97605312 -79368828 + HERV17 LTR ERV1 3326 6019 -2607 261 103 0 0 chrX 97605305 97605344 -79368796 + HERV17 LTR ERV1 7510 7548 -1078 * 2239 61 0 3 chrX 97605334 97605627 -79368513 + HERV17 LTR ERV1 8335 8626 0 2514 41 25 0 chrX 97605627 97605945 -79368195 + LTR17 LTR ERV1 1 326 -454 675 230 57 42 chrX 97605972 97606237 -79367903 + L1ME2 LINE L1 5880 6148 -16 2059 274 111 15 chrX 97606308 97607057 -79367083 - L2 LINE L2 -1483 1831 1011 56 0 0 0 chrX 97607368 97607424 -79366716 + AT_rich Low_complexity Low_complexity 1 56 0 312 250 0 38 chrX 97608314 97608394 -79365746 - MIR SINE MIR -86 176 100 383 272 132 9 chrX 97609509 97609623 -79364517 - MIR SINE MIR -112 150 23 520 222 139 26 chrX 97610033 97610227 -79363913 + L2 LINE L2 3098 3313 0 3142 94 9 13 chrX 97610439 97610894 -79363246 + L1PA10 LINE L1 5712 6164 -4 314 360 8 0 chrX 97610998 97611123 -79363017 + MIR SINE MIR 15 140 -122 402 261 126 74 chrX 97611138 97611162 -79362978 - MLT1J2 LTR MaLR -4 442 421 1633 173 23 33 chrX 97611162 97611469 -79362671 - AluJo SINE Alu -8 304 1 402 261 126 74 chrX 97611469 97611815 -79362325 - MLT1J2 LTR MaLR -25 421 49 8217 203 114 16 chrX 97612739 97613467 -79360673 - L1M2 LINE L1 -4721 2128 1473 2493 97 44 8 chrX 97613467 97613829 -79360311 + THE1C LTR MaLR 1 375 0 10034 116 40 13 chrX 97613829 97615368 -79358772 + THE1C-int LTR MaLR 1 1580 0 2625 81 30 16 chrX 97615368 97615738 -79358402 + THE1C LTR MaLR 1 375 0 8217 203 114 16 chrX 97615738 97616942 -79357198 - L1M2 LINE L1 -5375 1474 3 333 0 0 0 chrX 97616966 97617003 -79357137 + (TG)n Simple_repeat Simple_repeat 2 38 0 1168 229 60 5 chrX 97617015 97617382 -79356758 - L1M4 LINE L1 -1908 4736 4350 613 209 0 18 chrX 97617372 97617535 -79356605 - L1M4 LINE L1 -3125 3519 3360 * 275 173 0 0 chrX 97617787 97617839 -79356301 + MLT2E LTR ERVL 558 609 -19 2448 250 56 17 chrX 97618335 97620417 -79353723 - L1M4 LINE L1 -3303 3341 1084 306 148 0 0 chrX 97620419 97620473 -79353667 + (TA)n Simple_repeat Simple_repeat 2 55 0 338 275 0 22 chrX 97620474 97620565 -79353575 - L1MC4 LINE L1 -1340 6702 6614 495 194 0 0 chrX 97620572 97620680 -79353460 + (TA)n Simple_repeat Simple_repeat 1 108 0 2585 267 63 23 chrX 97620700 97621684 -79352456 - L1M4 LINE L1 -5510 1032 10 1599 194 31 41 chrX 97621794 97622185 -79351955 + MLT1B LTR MaLR 4 390 0 345 327 20 26 chrX 97622547 97622700 -79351440 - MLT1J2 LTR MaLR 0 450 299 534 225 46 84 chrX 97622861 97623067 -79351073 - ORSL DNA AcHobo 0 275 81 2312 97 0 0 chrX 97623067 97623355 -79350785 + AluSx SINE Alu 1 288 -24 534 225 46 84 chrX 97623355 97623433 -79350707 - ORSL DNA AcHobo -194 81 2 1834 197 98 19 chrX 97623470 97623937 -79350203 - MLT1D LTR MaLR -1 504 1 362 219 14 0 chrX 97624070 97624143 -79349997 + MIR SINE MIR 159 232 -30 940 151 135 0 chrX 97625821 97626064 -79348076 - MLT2C1 LTR ERVL -48 349 33 183 42 0 0 chrX 97626064 97626088 -79348052 + (CAA)n Simple_repeat Simple_repeat 2 25 0 940 151 135 0 chrX 97626088 97626127 -79348013 - MLT2C1 LTR ERVL -364 33 1 507 204 11 0 chrX 97626535 97626628 -79347512 - MER5B DNA MER1_type -2 176 83 2349 112 0 0 chrX 97626644 97626949 -79347191 - AluSx SINE Alu -7 305 1 24 20 0 60 chrX 97627471 97627521 -79346619 + AT_rich Low_complexity Low_complexity 1 47 0 320 288 26 39 chrX 97627586 97627739 -79346401 - L1ME LINE L1 -367 5803 5653 198 185 56 56 chrX 97627743 97627797 -79346343 + MER5B DNA MER1_type 1 54 -124 1464 237 96 42 chrX 97628522 97628842 -79345298 + L1ME3A LINE L1 5589 5954 -216 2164 68 0 34 chrX 97628842 97629174 -79344966 - AluY SINE Alu 0 322 1 1464 237 96 42 chrX 97629174 97629404 -79344736 + L1ME3A LINE L1 5954 6170 0 382 307 66 19 chrX 97629503 97629715 -79344425 - L1ME LINE L1 -751 5395 5174 235 242 32 0 chrX 97629816 97629911 -79344229 - L1ME LINE L1 -1106 5040 4943 723 164 263 0 chrX 97629981 97630152 -79343988 - MER47A DNA MER2_type -149 217 2 563 362 42 32 chrX 97630285 97630585 -79343555 + ERVL LTR ERVL 4731 5027 -737 1312 209 145 21 chrX 97630585 97630958 -79343182 - LTR52 LTR ERVL -2 419 1 563 362 42 32 chrX 97630958 97631304 -79342836 + ERVL LTR ERVL 5027 5383 -381 1650 266 27 22 chrX 97631422 97631870 -79342270 + LTR16A LTR ERVL 1 450 0 656 204 64 143 chrX 97631919 97632233 -79341907 + MLT1B LTR MaLR 1 289 -101 2451 153 31 4 chrX 97632233 97632690 -79341450 - L1MB1 LINE L1 -164 6025 5557 440 147 0 59 chrX 97632689 97632791 -79341349 - L1M3d LINE L1 -5790 101 6 * 383 205 68 0 chrX 97632802 97632919 -79341221 + Charlie4 DNA MER1_type 1809 1933 -28 382 238 28 0 chrX 97633034 97633141 -79340999 - MLT1J2 LTR MaLR -301 170 63 477 259 46 42 chrX 97633286 97633525 -79340615 - L1ME LINE L1 -1943 4203 3964 216 379 32 11 chrX 97633768 97633863 -79340277 + MIR3 SINE MIR 3 99 -109 677 276 16 34 chrX 97633872 97634114 -79340026 - MIR SINE MIR -3 259 25 365 345 0 0 chrX 97635930 97636043 -79338097 + MIR3 SINE MIR 90 202 -6 183 286 36 18 chrX 97636648 97636704 -79337436 + MIR SINE MIR 87 143 -65 475 272 51 19 chrX 97637309 97637467 -79336673 - MIR SINE MIR -97 165 3 222 350 0 12 chrX 97637700 97637780 -79336360 + MIR SINE MIR 19 97 -165 380 328 33 74 chrX 97639870 97640355 -79333785 + L2 LINE L2 2241 2705 -609 257 328 174 26 chrX 97640767 97641032 -79333108 + L3 LINE CR1 1264 1567 -10 294 95 0 0 chrX 97641282 97641324 -79332816 + (TAG)n Simple_repeat Simple_repeat 1 42 0 534 281 0 43 chrX 97642125 97642289 -79331851 + MIR SINE MIR 78 234 -28 1524 262 31 17 chrX 97643618 97644038 -79330102 + ERVL LTR ERVL 3827 4252 -1512 512 180 0 0 chrX 97646537 97646626 -79327514 - AluY SINE Alu -12 299 211 402 21 0 0 chrX 97646988 97647035 -79327105 + (CA)n Simple_repeat Simple_repeat 2 48 0 573 299 75 17 chrX 97649024 97649198 -79324942 + MIR SINE MIR 4 187 -75 261 133 0 0 chrX 97649222 97649267 -79324873 + L1MA1 LINE L1 6254 6298 -4 184 235 0 0 chrX 97649296 97649330 -79324810 + L2 LINE L2 3263 3296 -17 1854 124 3 31 chrX 97650873 97651164 -79322976 - MER1B DNA MER1_type 0 339 57 376 252 19 19 chrX 97653498 97653601 -79320539 + MIR SINE MIR 72 174 -88 387 0 0 0 chrX 97653604 97653647 -79320493 + (TG)n Simple_repeat Simple_repeat 2 44 0 1826 109 4 4 chrX 97653810 97654067 -79320073 - AluSx SINE Alu -9 303 47 190 283 67 0 chrX 97654266 97654326 -79319814 + L2 LINE L2 3197 3260 -12 219 284 12 12 chrX 97656224 97656305 -79317835 + GA-rich Low_complexity Low_complexity 5 85 0 1767 166 10 20 chrX 97656938 97657234 -79316906 - AluJo SINE Alu -19 293 1 25 0 0 0 chrX 97657886 97657911 -79316229 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chrX 97658395 97658428 -79315712 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 718 315 50 4 chrX 97658980 97659218 -79314922 - MIR SINE MIR -8 254 6 573 343 14 62 chrX 97661463 97661752 -79312388 + L2 LINE L2 2998 3272 0 809 218 0 31 chrX 97662009 97662202 -79311938 + MER5A DNA MER1_type 3 189 0 2501 87 8 50 chrX 97662948 97663328 -79310812 + THE1B LTR MaLR 1 364 0 10835 102 29 1 chrX 97663329 97664865 -79309275 + THE1B-int LTR MaLR 2 1580 0 2251 79 57 6 chrX 97664865 97665183 -79308957 + THE1B LTR MaLR 1 334 -30 251 81 27 0 chrX 97665182 97665219 -79308921 - MADE1 DNA Mariner -42 38 1 * 235 191 0 0 chrX 97665716 97665758 -79308382 + MER5A DNA MER1_type 1 42 -147 1725 157 60 20 chrX 97665804 97666154 -79307986 - L1MB8 LINE L1 0 6178 5815 2006 181 54 11 chrX 97666155 97666913 -79307227 - L1MB8 LINE L1 -397 5769 4925 226 125 31 47 chrX 97666988 97667052 -79307088 + T-rich Low_complexity Low_complexity 5 67 0 213 39 0 0 chrX 97667240 97667266 -79306874 + (CA)n Simple_repeat Simple_repeat 2 27 0 286 191 37 0 chrX 97667267 97667403 -79306737 + (TA)n Simple_repeat Simple_repeat 2 142 0 390 264 27 9 chrX 97667591 97667701 -79306439 - L2 LINE L2 -1026 2288 2177 239 250 55 78 chrX 97667812 97667940 -79306200 + MIR SINE MIR 92 216 -46 1742 149 60 0 chrX 97668701 97668992 -79305148 + AluSx SINE Alu 1 307 0 359 278 26 35 chrX 97670223 97670338 -79303802 - MIR SINE MIR -75 133 20 639 71 0 0 chrX 97672652 97672736 -79301404 - L1PA7 LINE L1 0 6154 6071 27 62 0 0 chrX 97673422 97673470 -79300670 + AT_rich Low_complexity Low_complexity 1 48 0 26 88 0 0 chrX 97673699 97673767 -79300373 + AT_rich Low_complexity Low_complexity 1 68 0 1453 235 62 42 chrX 97674486 97674937 -79299203 + MLT1C LTR MaLR 8 467 0 27 0 0 0 chrX 97675555 97675582 -79298558 + AT_rich Low_complexity Low_complexity 1 27 0 3402 166 18 5 chrX 97676226 97676830 -79297310 - L1MD3 LINE L1 -14 7981 7370 2809 116 11 19 chrX 97677375 97677851 -79296289 - L1MA8 LINE L1 -5 6286 5815 212 0 0 35 chrX 97678123 97678152 -79295988 + (TAA)n Simple_repeat Simple_repeat 1 28 0 263 324 56 19 chrX 97679844 97679952 -79294188 + L2 LINE L2 3200 3311 -2 21 0 0 0 chrX 97680222 97680243 -79293897 + AT_rich Low_complexity Low_complexity 1 21 0 618 205 268 26 chrX 97681708 97681898 -79292242 + MIR SINE MIR 23 258 -4 22 70 0 0 chrX 97682980 97683023 -79291117 + AT_rich Low_complexity Low_complexity 1 43 0 575 293 123 14 chrX 97683714 97683926 -79290214 + MIR SINE MIR 3 237 -25 656 217 21 19 chrX 97685105 97685273 -79288867 + L1ME1 LINE L1 6008 6334 0 204 288 34 103 chrX 97685404 97685550 -79288590 + MIR3 SINE MIR 23 158 -50 527 254 116 28 chrX 97686939 97687120 -79287020 - MIR SINE MIR -13 249 53 3882 179 45 21 chrX 97687299 97687596 -79286544 - L1MB7 LINE L1 -1 6183 5895 524 28 127 0 chrX 97687596 97687667 -79286473 + MADE1 DNA Mariner 1 80 0 3882 179 45 21 chrX 97687667 97688208 -79285932 - L1MB7 LINE L1 -289 5895 5325 1485 187 122 23 chrX 97688210 97688605 -79285535 - L1MB7 LINE L1 -887 5259 4826 2087 89 0 21 chrX 97688684 97688964 -79285176 + AluSg SINE Alu 1 274 -36 420 55 0 0 chrX 97688965 97689020 -79285120 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 342 45 0 0 chrX 97690225 97690269 -79283871 + (CA)n Simple_repeat Simple_repeat 2 45 0 533 314 153 14 chrX 97690271 97690558 -79283582 - L3b LINE CR1 -121 1462 1136 22 0 0 0 chrX 97691317 97691339 -79282801 + AT_rich Low_complexity Low_complexity 1 22 0 255 103 0 0 chrX 97691475 97691514 -79282626 + (CA)n Simple_repeat Simple_repeat 2 40 0 207 200 44 0 chrX 97691751 97691796 -79282344 + CT-rich Low_complexity Low_complexity 3 49 0 192 97 0 0 chrX 97692907 97692938 -79281202 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 397 301 53 15 chrX 97693026 97693232 -79280908 + L1M4 LINE L1 2375 2588 -3558 388 353 21 8 chrX 97693356 97693597 -79280543 + L1M4 LINE L1 2685 2928 -3218 242 188 62 0 chrX 97693858 97693906 -79280234 + L2 LINE L2 3214 3264 -8 23 86 0 0 chrX 97694932 97694990 -79279150 + AT_rich Low_complexity Low_complexity 1 58 0 232 323 0 20 chrX 97696300 97696399 -79277741 + CT-rich Low_complexity Low_complexity 2 98 0 216 0 0 0 chrX 97698393 97698417 -79275723 + (CA)n Simple_repeat Simple_repeat 2 25 0 424 279 139 0 chrX 97698475 97698597 -79275543 - L2 LINE L2 -9 3263 3125 21 0 0 0 chrX 97700456 97700477 -79273663 + AT_rich Low_complexity Low_complexity 1 21 0 260 295 26 26 chrX 97700747 97700825 -79273315 - L2 LINE L2 -2 3270 3193 260 319 0 22 chrX 97702526 97702617 -79271523 + MER5B DNA MER1_type 88 176 -2 606 82 0 62 chrX 97702706 97702803 -79271337 + THE1A LTR MaLR 260 350 -5 11589 89 10 9 chrX 97702811 97704385 -79269755 + THE1A-int LTR MaLR 1 1576 -4 2687 85 6 0 chrX 97704389 97704742 -79269398 + THE1A LTR MaLR 1 355 0 324 299 51 8 chrX 97705541 97705658 -79268482 + MIR3 SINE MIR 65 186 -22 246 305 114 23 chrX 97705859 97705990 -79268150 - MIR SINE MIR -110 152 10 812 277 45 21 chrX 97706705 97706947 -79267193 + MIR SINE MIR 5 252 -10 692 169 105 12 chrX 97708182 97708354 -79265786 - MER53 DNA DNA -1 188 1 699 52 0 0 chrX 97709719 97709815 -79264325 + (CA)n Simple_repeat Simple_repeat 1 96 0 232 329 12 24 chrX 97710669 97710754 -79263386 - L2 LINE L2 -30 3283 3200 368 279 26 84 chrX 97711738 97711928 -79262212 + MIR SINE MIR 3 181 -81 27 0 0 0 chrX 97712035 97712062 -79262078 + AT_rich Low_complexity Low_complexity 1 27 0 222 222 0 0 chrX 97712917 97712971 -79261169 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 36 0 0 chrX 97714145 97714173 -79259967 + AT_rich Low_complexity Low_complexity 1 28 0 185 138 0 0 chrX 97715691 97715720 -79258420 - L2 LINE L2 -33 3239 3211 294 319 92 0 chrX 97715723 97715842 -79258298 - MIR3 SINE MIR -18 190 61 572 295 66 29 chrX 97716854 97717098 -79257042 - MIR SINE MIR -3 259 7 267 297 0 0 chrX 97717151 97717242 -79256898 - L1ME LINE L1 -472 5649 5559 677 264 44 47 chrX 97717538 97717806 -79256334 + L1MCa LINE L1 65 282 -6141 468 107 0 13 chrX 97717806 97717881 -79256259 - L1MA2 LINE L1 0 6304 6231 677 264 44 47 chrX 97717881 97717968 -79256172 + L1MCa LINE L1 282 368 -6055 2243 245 58 36 chrX 97718224 97719320 -79254820 + L1MCa LINE L1 808 2157 -4965 249 33 0 0 chrX 97719320 97719350 -79254790 + (CA)n Simple_repeat Simple_repeat 2 31 0 2243 245 58 36 chrX 97719350 97719820 -79254320 + L1MCa LINE L1 2157 2615 -4507 245 231 0 0 chrX 97719939 97720004 -79254136 + L1MCa LINE L1 2722 2786 -4336 * 514 211 9 3 chrX 97719999 97720122 -79254018 + L1ME1 LINE L1 6054 6333 -1 1554 196 6 29 chrX 97720735 97721051 -79253089 - AluJo SINE Alu -3 309 1 206 276 145 86 chrX 97721108 97721260 -79252880 - MER91A DNA MER1_type -35 161 1 190 333 8 95 chrX 97721506 97721632 -79252508 + L2 LINE L2 2973 3087 -185 1574 160 78 22 chrX 97721683 97722002 -79252138 + MER2 DNA MER2_type 1 337 -8 409 295 9 18 chrX 97722102 97722214 -79251926 + L2 LINE L2 3199 3309 -4 2781 46 9 3 chrX 97722802 97723149 -79250991 - L1PA5 LINE L1 -2 6152 5804 2081 81 106 0 chrX 97723448 97723731 -79250409 - AluSp SINE Alu 0 313 1 469 81 40 0 chrX 97723832 97723906 -79250234 - MADE1 DNA Mariner -1 79 3 704 266 71 0 chrX 97724579 97724733 -79249407 + MIR3 SINE MIR 30 194 -14 207 245 136 109 chrX 97726689 97726873 -79247267 - MER5A DNA MER1_type 0 189 1 499 35 76 41 chrX 97727379 97727551 -79246589 + (TA)n Simple_repeat Simple_repeat 2 179 0 358 142 26 45 chrX 97727581 97727736 -79246404 + (TA)n Simple_repeat Simple_repeat 1 152 0 201 94 0 0 chrX 97727735 97727767 -79246373 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 21 0 0 0 chrX 97730235 97730256 -79243884 + AT_rich Low_complexity Low_complexity 1 21 0 221 234 39 13 chrX 97731443 97731520 -79242620 + C-rich Low_complexity Low_complexity 6 84 0 978 198 53 26 chrX 97733890 97734117 -79240023 - MIR SINE MIR -2 260 28 697 176 41 53 chrX 97735831 97736001 -79238139 + MER69A DNA AcHobo 10 177 0 32 67 0 0 chrX 97736380 97736440 -79237700 + AT_rich Low_complexity Low_complexity 1 60 0 307 330 150 6 chrX 97736549 97736722 -79237418 + L3 LINE CR1 185 382 -1195 239 93 23 0 chrX 97736722 97736765 -79237375 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1121 131 0 0 chrX 97736768 97736921 -79237219 - AluSg/x SINE Alu -25 287 135 1739 252 41 12 chrX 97736959 97737474 -79236666 + MLT1F LTR MaLR 11 540 -2 1327 141 0 33 chrX 97737487 97737700 -79236440 + AluJb SINE Alu 84 289 -23 417 289 153 11 chrX 97737703 97737893 -79236247 + L3 LINE CR1 375 591 -986 506 247 104 6 chrX 97737930 97738112 -79236028 + MER3 DNA MER1_type 9 208 -1 290 289 42 48 chrX 97738170 97738336 -79235804 + L3 LINE CR1 581 745 -832 811 298 177 60 chrX 97738776 97739488 -79234652 + L3 LINE CR1 768 1562 -15 441 221 39 16 chrX 97740442 97740638 -79233502 + L1MC4a LINE L1 5218 5425 -737 13377 134 13 115 chrX 97740873 97744126 -79230014 + L1P LINE L1 1 2921 -3225 2216 30 0 0 chrX 97744127 97744395 -79229745 + L1P2 LINE L1 5282 5549 -606 * 24826 28 3 1 chrX 97744391 97748193 -79225947 + L1PA3 LINE L1 2364 6177 0 337 164 115 0 chrX 97748302 97748363 -79225777 - L2 LINE L2 0 3313 3246 1688 176 59 9 chrX 97748949 97749273 -79224867 + MER58B DNA MER1_type 2 341 0 442 234 213 0 chrX 97749320 97749460 -79224680 + MIR SINE MIR 78 248 -14 239 240 39 0 chrX 97750191 97750295 -79223845 + GA-rich Low_complexity Low_complexity 3 110 0 451 340 47 28 chrX 97750302 97750729 -79223411 + L1MC4a LINE L1 5476 5910 -1898 16597 93 9 21 chrX 97750735 97754036 -79220104 - L1PA7 LINE L1 -5 6149 2877 5118 34 7 3 chrX 97754043 97754656 -79219484 - L1PA4 LINE L1 -4 6151 5537 238 245 0 20 chrX 97755875 97755924 -79218216 - L2 LINE L2 -86 3186 3139 377 280 117 44 chrX 97756047 97756263 -79217877 - MIR SINE MIR -26 236 4 227 260 92 75 chrX 97756840 97757013 -79217127 + L2 LINE L2 2715 2890 -424 358 266 50 65 chrX 97757223 97757362 -79216778 + L2 LINE L2 3167 3303 -10 234 0 0 0 chrX 97758243 97758269 -79215871 + (TC)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chrX 97760067 97760093 -79214047 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 2435 96 0 0 chrX 97760730 97761042 -79213098 + AluSx SINE Alu 1 312 0 378 0 0 0 chrX 97761054 97761096 -79213044 + (CA)n Simple_repeat Simple_repeat 2 43 0 868 194 53 0 chrX 97762943 97763113 -79211027 - MER58C DNA MER1_type 0 215 37 468 322 6 17 chrX 97763340 97763520 -79210620 + GA-rich Low_complexity Low_complexity 2 179 0 1598 163 0 19 chrX 97764393 97764663 -79209477 + AluJo SINE Alu 43 307 -5 31 0 0 0 chrX 97766350 97766381 -79207759 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 97769396 97769418 -79204722 + AT_rich Low_complexity Low_complexity 1 22 0 186 275 0 0 chrX 97771202 97771242 -79202898 - MIR SINE MIR -6 256 217 * 207 315 87 22 chrX 97771209 97771301 -79202839 - L2 LINE L2 -19 3294 3197 1805 160 0 11 chrX 97771573 97771855 -79202285 + AluJb SINE Alu 1 279 -33 183 305 140 24 chrX 97771925 97772089 -79202051 - L2 LINE L2 -640 2674 2492 2216 92 3 25 chrX 97772205 97772522 -79201618 - AluSg SINE Alu 0 310 1 210 300 22 33 chrX 97772581 97772671 -79201469 + L2 LINE L2 3224 3312 -1 510 187 84 65 chrX 97773299 97773454 -79200686 + MIR SINE MIR 105 262 0 414 233 39 10 chrX 97774624 97774727 -79199413 - MIR3 SINE MIR -11 197 92 450 222 252 0 chrX 97776096 97776231 -79197909 - MIR3 SINE MIR -3 205 37 487 141 0 0 chrX 97776264 97776342 -79197798 - AluJ/FRAM SINE Alu -10 302 225 1451 168 0 60 chrX 97776497 97776782 -79197358 - AluJb SINE Alu -44 268 1 791 238 44 73 chrX 97777135 97777383 -79196757 + MIR SINE MIR 22 262 0 21 0 0 0 chrX 97777576 97777597 -79196543 + AT_rich Low_complexity Low_complexity 1 21 0 1444 309 122 5 chrX 97777883 97778450 -79195690 + L3 LINE CR1 925 1557 -20 248 141 42 14 chrX 97778577 97778648 -79195492 + CT-rich Low_complexity Low_complexity 1 73 0 188 240 80 0 chrX 97778672 97778722 -79195418 - MIR SINE MIR -12 250 197 307 329 0 88 chrX 97778958 97779010 -79195130 - MIR SINE MIR -63 145 90 2859 7 0 0 chrX 97779010 97779318 -79194822 + AluYb8 SINE Alu 1 308 -10 307 329 0 88 chrX 97779318 97779402 -79194738 - MIR SINE MIR -118 90 21 405 226 52 9 chrX 97779581 97779696 -79194444 - L2 LINE L2 -20 3293 3174 561 400 28 23 chrX 97782317 97782709 -79191431 - L2 LINE L2 -10 3262 2869 3796 175 16 4 chrX 97783079 97783788 -79190352 - L1MB5 LINE L1 -9 6165 5449 260 26 0 26 chrX 97783986 97784024 -79190116 + (CA)n Simple_repeat Simple_repeat 2 38 0 2470 74 0 0 chrX 97784215 97784525 -79189615 - AluY SINE Alu -1 310 1 478 332 45 15 chrX 97785418 97785617 -79188523 - MIR SINE MIR -1 261 57 561 291 150 5 chrX 97786051 97786264 -79187876 - MLT1J LTR MaLR -104 407 164 834 240 145 25 chrX 97786268 97786510 -79187630 - MLT1E LTR MaLR -8 585 315 639 251 25 25 chrX 97786526 97786689 -79187451 - MLT1J LTR MaLR -346 165 3 288 341 45 8 chrX 97786693 97786825 -79187315 - MIR SINE MIR -53 209 73 745 299 33 24 chrX 97788892 97789134 -79185006 - MIR SINE MIR -16 246 10 3569 52 2 0 chrX 97789237 97789678 -79184462 + L1PA6 LINE L1 5712 6153 -1 274 60 20 20 chrX 97791137 97791187 -79182953 + (GA)n Simple_repeat Simple_repeat 1 50 0 40 42 0 14 chrX 97792258 97792272 -79181868 + AT_rich Low_complexity Low_complexity 1 14 -57 2188 110 0 3 chrX 97792272 97792562 -79181578 + AluSx SINE Alu 1 289 -23 40 42 0 14 chrX 97792562 97792619 -79181521 + AT_rich Low_complexity Low_complexity 14 71 0 392 267 17 52 chrX 97793466 97793622 -79180518 + MIR SINE MIR 2 147 -61 755 185 104 39 chrX 97793622 97793952 -79180188 - MSTB2 LTR MaLR 0 457 1 226 234 160 11 chrX 97793955 97794049 -79180091 + MIR SINE MIR 147 254 -8 1802 120 0 7 chrX 97794067 97794351 -79179789 - Tigger2 DNA MER2_type -170 2548 2267 334 215 46 0 chrX 97794335 97794400 -79179740 - Tigger2 DNA MER2_type -2649 69 2 * 338 252 21 4 chrX 97795210 97795297 -79178843 + MIR SINE MIR 72 162 -46 409 309 222 10 chrX 97795383 97795590 -79178550 + MIR SINE MIR 6 256 -6 206 304 95 7 chrX 97795744 97795892 -79178248 + L2 LINE L2 3014 3174 -139 17375 50 58 3 chrX 97796739 97798984 -79175156 + L1P LINE L1 1 2367 -3779 1379 129 0 0 chrX 97798984 97799170 -79174970 + AluSq SINE Alu 109 294 -19 299 193 23 23 chrX 97799171 97799259 -79174881 - L1MC3 LINE L1 -151 7634 7547 288 143 36 0 chrX 97799259 97799315 -79174825 - L1ME LINE L1 -564 5602 5545 249 167 0 0 chrX 97799666 97799702 -79174438 - Alu SINE Alu -132 167 132 2098 146 12 0 chrX 97799727 97800056 -79174084 - MER7A DNA MER2_type -1 345 15 715 156 21 80 chrX 97800441 97800593 -79173547 - MLT1A1 LTR MaLR -2 398 226 4023 172 25 4 chrX 97800594 97801314 -79172826 - MLT1A1-int LTR MaLR -999 736 2 1953 182 22 0 chrX 97801315 97801672 -79172468 - MLT1A1 LTR MaLR 0 365 1 23 33 0 0 chrX 97803888 97803918 -79170222 + AT_rich Low_complexity Low_complexity 1 30 0 340 300 30 0 chrX 97803954 97804054 -79170086 - MIR SINE MIR -50 212 110 892 126 26 13 chrX 97804237 97804388 -79169752 + LTR65 LTR ERV1 18 170 -499 318 212 15 0 chrX 97804620 97804686 -79169454 + LTR65 LTR ERV1 560 626 -43 2662 143 38 6 chrX 97805621 97806095 -79168045 - L1MC1 LINE L1 -11 6322 5834 226 306 14 14 chrX 97806114 97806186 -79167954 - L2 LINE L2 0 3272 3201 5285 175 45 11 chrX 97806339 97807503 -79166637 - L1MC2 LINE L1 -50 6294 5090 5843 182 29 20 chrX 97807510 97807603 -79166537 + L1M2 LINE L1 2677 2768 -4080 786 50 0 0 chrX 97807603 97807702 -79166438 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 5843 182 29 20 chrX 97807702 97809137 -79165003 + L1M2 LINE L1 2768 4219 -2629 4204 127 38 4 chrX 97809137 97809840 -79164300 + L1MA4A LINE L1 5571 6302 -1 3966 211 84 66 chrX 97809840 97810005 -79164135 - L1MCb LINE L1 -4002 2562 2402 2056 138 69 20 chrX 97810005 97810411 -79163729 + MSTA LTR MaLR 3 428 0 3966 211 84 66 chrX 97810411 97811598 -79162542 - L1MCb LINE L1 -4162 2402 1239 186 103 0 0 chrX 97811598 97811627 -79162513 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3966 211 84 66 chrX 97811627 97812159 -79161981 - L1MCb LINE L1 -5325 1239 718 1506 177 37 19 chrX 97812159 97812430 -79161710 - AluJo SINE Alu -30 282 7 3966 211 84 66 chrX 97812430 97812885 -79161255 - L1MCb LINE L1 -5846 718 6 446 149 32 0 chrX 97813050 97813144 -79160996 + L1MA10 LINE L1 6235 6331 -3 188 293 19 66 chrX 97813461 97813567 -79160573 + L2 LINE L2 3180 3280 -33 5858 93 39 15 chrX 97813602 97815110 -79159030 + L1PA15 LINE L1 4616 6157 -8 215 288 39 65 chrX 97816005 97816158 -79157982 - MIR SINE MIR -66 196 48 6734 21 0 0 chrX 97817092 97817870 -79156270 - L1PA2 LINE L1 -2 6153 5376 1431 11 0 6 chrX 97817870 97818053 -79156087 + L1P LINE L1 3108 3289 -2857 22 0 0 0 chrX 97818830 97818852 -79155288 + AT_rich Low_complexity Low_complexity 1 22 0 354 283 171 28 chrX 97819476 97819654 -79154486 + MIR SINE MIR 19 223 -39 362 282 40 16 chrX 97819936 97820060 -79154080 - L2 LINE L2 -21 3251 3125 3003 248 78 23 chrX 97820351 97821512 -79152628 + L2 LINE L2 2089 3308 -5 437 306 77 67 chrX 97821661 97821988 -79152152 - MER102a DNA MER1_type 0 330 1 783 196 7 0 chrX 97822726 97822869 -79151271 - MLT1A1 LTR MaLR -2 363 220 1528 142 90 0 chrX 97822869 97823137 -79151003 - MLT1A1-int LTR MaLR -1443 292 1 1681 179 53 34 chrX 97823137 97823417 -79150723 - MLT1A1 LTR MaLR 0 365 75 1763 166 7 19 chrX 97823417 97823725 -79150415 - AluJo SINE Alu -8 304 1 1681 179 53 34 chrX 97823725 97823802 -79150338 - MLT1A1 LTR MaLR -290 75 1 297 0 0 0 chrX 97825191 97825224 -79148916 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 312 27 0 0 chrX 97825223 97825260 -79148880 + (TG)n Simple_repeat Simple_repeat 2 38 0 336 200 0 0 chrX 97825260 97825330 -79148810 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 80 0 0 chrX 97826494 97826544 -79147596 + AT_rich Low_complexity Low_complexity 1 50 0 436 278 103 34 chrX 97826891 97827125 -79147015 + L1MC4 LINE L1 7793 8042 0 1674 175 36 0 chrX 97827999 97828184 -79145956 - AluJo SINE Alu 0 319 118 369 0 0 0 chrX 97828184 97828225 -79145915 + (TTA)n Simple_repeat Simple_repeat 2 42 0 1674 175 36 0 chrX 97828225 97828347 -79145793 - AluJo SINE Alu -201 118 2 1752 168 13 22 chrX 97828733 97829048 -79145092 + AluJo SINE Alu 1 312 0 205 259 56 0 chrX 97829853 97829907 -79144233 - L2 LINE L2 -5 3308 3252 186 405 13 0 chrX 97829958 97830037 -79144103 - L2 LINE L2 -43 3229 3150 216 175 0 0 chrX 97830996 97831036 -79143104 + L2 LINE L2 3274 3313 0 22 0 0 0 chrX 97831966 97831988 -79142152 + AT_rich Low_complexity Low_complexity 1 22 0 37287 85 7 10 chrX 97832521 97838615 -79135525 + L1PA6 LINE L1 92 6464 -5 33 0 0 0 chrX 97838615 97838648 -79135492 + AT_rich Low_complexity Low_complexity 1 33 0 1454 164 152 12 chrX 97839207 97839549 -79134591 - MLT1B LTR MaLR 0 390 1 686 197 171 65 chrX 97840022 97840407 -79133733 - LTR37A LTR ERV1 0 426 1 569 257 37 0 chrX 97840609 97840745 -79133395 - MIR SINE MIR -51 211 71 352 349 62 0 chrX 97840857 97840986 -79133154 - L2 LINE L2 -20 3252 3116 341 295 36 62 chrX 97841063 97841256 -79132884 - L2 LINE L2 -467 2847 2660 378 159 177 35 chrX 97841302 97841415 -79132725 - MLT1H LTR MaLR -25 524 396 2500 181 13 59 chrX 97841506 97841623 -79132517 + MLT1D LTR MaLR 1 122 -383 2464 150 26 12 chrX 97841623 97842043 -79132097 + MSTB LTR MaLR 1 426 0 2500 181 13 59 chrX 97842043 97842454 -79131686 + MLT1D LTR MaLR 122 505 0 837 209 33 30 chrX 97842454 97842666 -79131474 - MLT1H LTR MaLR -296 253 1 342 359 32 0 chrX 97842666 97842822 -79131318 - L2 LINE L2 -678 2636 2476 497 237 110 13 chrX 97842825 97842970 -79131170 - MIR SINE MIR -68 140 37 187 159 0 91 chrX 97843849 97843893 -79130247 + MIR SINE MIR 223 262 0 627 303 23 50 chrX 97844029 97844290 -79129850 - MIR SINE MIR -1 261 8 2117 196 23 28 chrX 97845233 97845661 -79128479 - MSTB LTR MaLR 0 426 1 186 255 0 0 chrX 97846540 97846591 -79127549 + (CAT)n Simple_repeat Simple_repeat 2 52 0 1493 275 141 2 chrX 97846635 97847126 -79127014 + MER69 DNA AcHobo 1 559 -1967 1892 182 45 17 chrX 97847177 97847643 -79126497 + MER69 DNA AcHobo 2046 2524 -2 505 261 43 43 chrX 97847724 97847908 -79126232 - L2 LINE L2 0 3313 3130 216 67 0 0 chrX 97849994 97850024 -79124116 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 377 324 27 39 chrX 97850944 97851132 -79123008 - MIR SINE MIR -50 212 20 1002 221 19 0 chrX 97851497 97851710 -79122430 - MER20 DNA MER1_type -1 218 2 445 260 51 47 chrX 97851893 97852076 -79122064 + MIR3 SINE MIR 1 183 -25 299 314 75 38 chrX 97852379 97852538 -79121602 - L2 LINE L2 -1 3271 3107 22 35 0 0 chrX 97852635 97852664 -79121476 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chrX 97852903 97852943 -79121197 + AT_rich Low_complexity Low_complexity 1 40 0 1440 55 6 0 chrX 97853006 97853189 -79120951 - L1PA10 LINE L1 0 6168 5985 232 100 20 40 chrX 97853576 97853626 -79120514 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 207 211 0 0 chrX 97853650 97853688 -79120452 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 268 286 92 20 chrX 97854148 97854246 -79119894 + L2 LINE L2 3163 3267 -5 192 339 24 55 chrX 97855812 97855939 -79118201 - L2 LINE L2 -12 3301 3179 460 330 65 0 chrX 97855953 97856153 -79117987 + MIR SINE MIR 2 214 -48 237 317 50 20 chrX 97856256 97856357 -79117783 - L2 LINE L2 -214 3058 2955 394 281 33 20 chrX 97857900 97858053 -79116087 - MIR3 SINE MIR -15 193 39 219 69 0 0 chrX 97858382 97858411 -79115729 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chrX 97858749 97858769 -79115371 + (T)n Simple_repeat Simple_repeat 1 20 0 303 289 39 10 chrX 97859289 97859393 -79114747 + L1MC4 LINE L1 6597 6703 -1339 1366 236 53 37 chrX 97859564 97859941 -79114199 - MSTD LTR MaLR -2 394 12 2761 246 141 36 chrX 97859941 97860779 -79113361 - MSTD-int LTR MaLR -3 1732 807 1677 157 22 22 chrX 97860781 97861100 -79113040 - THE1C LTR MaLR 0 375 57 5158 207 60 101 chrX 97861100 97862824 -79111316 - THE1C-int LTR MaLR -57 1594 5 1492 208 77 21 chrX 97862830 97863205 -79110935 - MSTD LTR MaLR 0 396 1 181 225 28 113 chrX 97863368 97863439 -79110701 - L3 LINE CR1 -460 1117 1053 433 357 72 45 chrX 97863873 97864525 -79109615 + L1MEd LINE L1 67 736 -5383 930 182 33 37 chrX 97864865 97865079 -79109061 - MLT2B3 LTR ERVL -341 213 1 955 146 0 0 chrX 97865387 97865531 -79108609 + AluJb SINE Alu 159 302 -10 1023 226 169 60 chrX 97866900 97867029 -79107111 + L1MC4 LINE L1 5370 5483 -2559 1496 168 0 107 chrX 97867029 97867356 -79106784 + AluJb SINE Alu 1 292 -20 1023 226 169 60 chrX 97867356 97867811 -79106329 + L1MC4 LINE L1 5483 6018 -2024 * 1786 201 22 14 chrX 97867428 97867842 -79106298 + L1MB8 LINE L1 5635 6051 -127 763 164 7 0 chrX 97867846 97867986 -79106154 - L1MB5 LINE L1 -23 6151 6011 560 218 19 6 chrX 97867987 97868143 -79105997 + L1MB7 LINE L1 6027 6184 0 22 0 0 0 chrX 97868279 97868301 -79105839 + AT_rich Low_complexity Low_complexity 1 22 0 200 242 211 42 chrX 97868379 97868474 -79105666 - MIR3 SINE MIR -31 177 67 1837 237 41 27 chrX 97868595 97869157 -79104983 - L1ME1 LINE L1 -5 6161 5592 658 168 46 0 chrX 97869187 97869318 -79104822 - L1MC3 LINE L1 0 7785 7649 * 1002 161 18 6 chrX 97869317 97869525 -79104615 + L1ME LINE L1 5612 5821 -345 687 118 0 0 chrX 97869525 97869627 -79104513 + AluS SINE Alu 1 102 -211 210 269 17 39 chrX 97870465 97870577 -79103563 + CT-rich Low_complexity Low_complexity 2 174 0 659 268 29 43 chrX 97873277 97873486 -79100654 - MIR SINE MIR 0 262 57 185 406 150 12 chrX 97873507 97873667 -79100473 - L2 LINE L2 -225 3047 2866 846 293 8 20 chrX 97874041 97874287 -79099853 - MIR SINE MIR -8 254 12 22 0 0 0 chrX 97874844 97874866 -79099274 + AT_rich Low_complexity Low_complexity 1 22 0 682 285 33 59 chrX 97875074 97875344 -79098796 - L2 LINE L2 -2 3270 3008 221 311 38 61 chrX 97876632 97876764 -79097376 + L3b LINE CR1 1319 1447 -136 203 184 0 0 chrX 97876764 97876802 -79097338 + T-rich Low_complexity Low_complexity 1 38 0 207 176 0 0 chrX 97878278 97878312 -79095828 + GA-rich Low_complexity Low_complexity 2 35 0 252 122 0 0 chrX 97878542 97878583 -79095557 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 333 300 0 0 chrX 97879164 97879254 -79094886 - L1MC4 LINE L1 -1339 6703 6614 250 265 0 0 chrX 97879254 97879322 -79094818 + (CAGAGA)n Simple_repeat Simple_repeat 4 71 0 216 0 0 0 chrX 97879703 97879727 -79094413 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 343 308 82 41 chrX 97879783 97879929 -79094211 - L2 LINE L2 0 3272 3121 589 310 50 81 chrX 97879977 97880399 -79093741 - L2 LINE L2 -655 2659 2251 575 302 32 16 chrX 97881189 97881378 -79092762 - MIR3 SINE MIR -1 207 16 2327 103 0 0 chrX 97882382 97882693 -79091447 - AluY SINE Alu 0 311 1 3528 47 13 9 chrX 97883114 97883563 -79090577 - L1PA7 LINE L1 -2 6152 5702 612 255 88 44 chrX 97884029 97884280 -79089860 + MIR SINE MIR 1 262 0 1386 274 60 31 chrX 97885216 97885389 -79088751 + LTR16B LTR ERVL 3 170 -294 4844 110 53 9 chrX 97885389 97886136 -79088004 - LTR17 LTR ERV1 0 780 1 1386 274 60 31 chrX 97886136 97886411 -79087729 + LTR16B LTR ERVL 170 464 0 1152 220 5 0 chrX 97888581 97888799 -79085341 - MER20 DNA MER1_type 0 219 1 721 325 87 36 chrX 97889637 97890049 -79084091 + L3b LINE CR1 1143 1575 -8 213 350 20 0 chrX 97891022 97891122 -79083018 - MIR SINE MIR -13 249 148 208 242 107 67 chrX 97891468 97891617 -79082523 - L2 LINE L2 -5 3308 3154 468 172 0 0 chrX 97891990 97892077 -79082063 + CT-rich Low_complexity Low_complexity 2 88 0 243 61 0 0 chrX 97892470 97892503 -79081637 + (CA)n Simple_repeat Simple_repeat 1 33 0 25 0 0 0 chrX 97893084 97893109 -79081031 + AT_rich Low_complexity Low_complexity 1 25 0 201 121 0 0 chrX 97893825 97893858 -79080282 + (CATCC)n Simple_repeat Simple_repeat 1 33 0 2467 104 17 0 chrX 97894329 97894686 -79079454 - L1MA1 LINE L1 -1 6301 5939 217 213 0 0 chrX 97895555 97895602 -79078538 + (CTA)n Simple_repeat Simple_repeat 3 49 0 2230 88 3 3 chrX 97896121 97896417 -79077723 - AluSq SINE Alu -17 296 1 11095 150 24 27 chrX 97896684 97897050 -79077090 + L1M1 LINE L1 1723 2089 -5476 1820 152 16 16 chrX 97897050 97897181 -79076959 + AluSx SINE Alu 6 136 -176 2154 89 20 33 chrX 97897181 97897484 -79076656 + AluSg SINE Alu 2 300 -10 1820 152 16 16 chrX 97897484 97897655 -79076485 + AluSx SINE Alu 135 308 -4 11095 150 24 27 chrX 97897655 97897881 -79076259 + L1M1 LINE L1 2089 2314 -5251 2616 43 0 0 chrX 97897881 97898186 -79075954 + AluY SINE Alu 4 308 -3 11095 150 24 27 chrX 97898186 97900151 -79073989 + L1M1 LINE L1 2314 4279 -3286 1953 222 158 10 chrX 97900993 97901480 -79072660 + MLT1F1 LTR MaLR 2 560 -7 11315 135 30 22 chrX 97901563 97902360 -79071780 + Tigger2 DNA MER2_type 2 792 -1926 216 0 0 0 chrX 97902360 97902384 -79071756 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 11315 135 30 22 chrX 97902384 97903472 -79070668 + Tigger2 DNA MER2_type 792 1901 -817 1281 151 37 25 chrX 97903470 97903715 -79070425 + Tigger2 DNA MER2_type 2461 2708 -10 * 324 70 0 0 chrX 97903838 97903881 -79070259 + (TG)n Simple_repeat Simple_repeat 2 44 0 2466 60 0 22 chrX 97904246 97904564 -79069576 - AluY SINE Alu 0 311 1 7296 42 26 0 chrX 97904691 97905565 -79068575 - MER11D LTR ERVK 0 897 1 16966 28 2 1 chrX 97905565 97907547 -79066593 - HERVK11D LTR ERVK 0 7752 5767 1397 197 9 22 chrX 97908031 97908351 -79065789 - L1MD1 LINE L1 0 6636 6321 1689 233 62 50 chrX 97908362 97908608 -79065532 - L1MD1 LINE L1 -1100 5440 5198 387 0 0 0 chrX 97908608 97908651 -79065489 + (TA)n Simple_repeat Simple_repeat 2 44 0 1689 233 62 50 chrX 97908651 97908808 -79065332 - L1MD1 LINE L1 -1342 5198 5044 2361 65 3 0 chrX 97908808 97909101 -79065039 - AluY SINE Alu -17 294 1 1689 233 62 50 chrX 97909101 97909353 -79064787 - L1MD1 LINE L1 -1496 5044 4776 236 58 58 19 chrX 97909394 97909446 -79064694 + (TA)n Simple_repeat Simple_repeat 1 54 0 2057 119 7 0 chrX 97909456 97909749 -79064391 - AluSq SINE Alu -18 295 1 947 218 4 39 chrX 97909784 97910041 -79064099 - L1MD1 LINE L1 -1800 4740 4493 * 6505 230 93 5 chrX 97910038 97911658 -79062482 - L1MD1 LINE L1 -4758 1782 20 12650 143 7 1 chrX 97911660 97914573 -79059567 - L1PA10 LINE L1 0 6168 3240 796 103 0 0 chrX 97914573 97914680 -79059460 - U6 snRNA snRNA 0 107 1 925 176 59 44 chrX 97916112 97916316 -79057824 - MER20 DNA MER1_type 0 219 13 1987 109 22 0 chrX 97916720 97917040 -79057100 - L1MA2 LINE L1 -9 6295 5969 616 198 122 27 chrX 97917859 97918081 -79056059 - LTR37A LTR ERV1 -14 412 170 2499 233 34 52 chrX 97918203 97918494 -79055646 - MER31-int LTR ERV1 -644 4292 3997 2210 91 3 13 chrX 97918494 97918801 -79055339 - AluSc SINE Alu -5 304 1 2499 233 34 52 chrX 97918801 97919255 -79054885 - MER31-int LTR ERV1 -939 3997 3561 2141 166 33 6 chrX 97919255 97919891 -79054249 - MER39 LTR ERV1 0 707 1 2063 139 3 0 chrX 97919978 97920272 -79053868 + AluSq SINE Alu 1 295 -18 340 188 50 59 chrX 97920393 97920494 -79053646 - MER31-int LTR ERV1 -1648 3288 3189 613 206 9 90 chrX 97921066 97921299 -79052841 - MER31-int LTR ERV1 -1870 3066 2853 258 281 31 10 chrX 97921562 97921658 -79052482 - MER31-int LTR ERV1 -2340 2596 2499 242 246 0 18 chrX 97921885 97921942 -79052198 + Charlie1 DNA MER1_type 40 95 -2666 * 604 215 63 37 chrX 97921926 97922117 -79052023 + Charlie1 DNA MER1_type 2551 2746 -15 566 185 25 25 chrX 97922380 97922537 -79051603 - MER31-int LTR ERV1 -3021 1915 1759 830 142 0 0 chrX 97922568 97922688 -79051452 + L1P3 LINE L1 10 129 -6332 557 235 7 0 chrX 97922696 97922832 -79051308 - L1M4 LINE L1 -891 5255 5119 752 305 12 35 chrX 97922899 97923155 -79050985 + MIR SINE MIR 13 262 0 255 114 0 0 chrX 97924138 97924182 -79049958 + (CA)n Simple_repeat Simple_repeat 1 44 0 1487 76 0 14 chrX 97924259 97924470 -79049670 + L1PA13 LINE L1 5956 6163 0 374 337 70 6 chrX 97924541 97924713 -79049427 + MIR SINE MIR 3 185 -77 456 287 44 7 chrX 97924854 97924990 -79049150 + LTR16A LTR ERVL 1 141 -309 832 225 111 87 chrX 97925009 97925561 -79048579 - MER34B LTR ERV1 0 565 1 737 260 263 16 chrX 97925634 97926018 -79048122 - L2 LINE L2 -653 2661 2183 532 286 88 11 chrX 97926206 97926388 -79047752 - MIR SINE MIR -5 257 62 557 272 103 19 chrX 97926433 97926646 -79047494 - MIR SINE MIR 0 262 32 230 254 79 0 chrX 97927360 97927423 -79046717 + L2 LINE L2 3246 3313 0 327 25 0 0 chrX 97928293 97928333 -79045807 + (TAA)n Simple_repeat Simple_repeat 2 41 0 740 284 48 98 chrX 97928536 97928993 -79045147 - L3 LINE CR1 -5 1572 1139 188 236 73 0 chrX 97929031 97929086 -79045054 + MIR SINE MIR 131 189 -73 1042 248 40 9 chrX 97929108 97929334 -79044806 - MIR SINE MIR -27 235 3 183 129 0 0 chrX 97929368 97929399 -79044741 + (TA)n Simple_repeat Simple_repeat 1 31 0 233 313 16 0 chrX 97929605 97929669 -79044471 - L2 LINE L2 -3 3269 3205 671 313 52 62 chrX 97929740 97930225 -79043915 - L2 LINE L2 -3 3310 2831 602 265 30 77 chrX 97930742 97930976 -79043164 + MIR SINE MIR 28 250 -12 346 343 50 28 chrX 97931289 97931470 -79042670 - L2 LINE L2 -35 3237 3053 829 73 0 0 chrX 97932632 97932741 -79041399 - L1PB4 LINE L1 -7 6149 6041 523 222 17 8 chrX 97932876 97932993 -79041147 - MER5A DNA MER1_type -6 183 66 224 313 36 6 chrX 97933367 97933480 -79040660 - MIR3 SINE MIR -92 116 4 486 58 0 0 chrX 97934197 97934266 -79039874 - L1PA2 LINE L1 0 6155 6087 1579 167 55 55 chrX 97934440 97934675 -79039465 - LTR37A LTR ERV1 0 426 189 1994 136 0 26 chrX 97934675 97934977 -79039163 + AluSx SINE Alu 3 296 -16 1579 167 55 55 chrX 97934977 97935160 -79038980 - LTR37A LTR ERV1 -236 190 8 503 235 73 79 chrX 97935897 97936081 -79038059 + MIR3 SINE MIR 19 198 -10 866 272 35 0 chrX 97936293 97936525 -79037615 - MIR SINE MIR -3 259 20 452 276 36 39 chrX 97936844 97936999 -79037141 + MIR3 SINE MIR 44 206 -2 2103 64 0 0 chrX 97938504 97938769 -79035371 - L1PA3 LINE L1 -1 6154 5890 219 62 0 0 chrX 97939425 97939457 -79034683 + L2 LINE L2 3282 3313 0 476 324 84 17 chrX 97940188 97940426 -79033714 - MIR SINE MIR -7 255 2 21 0 0 0 chrX 97941444 97941465 -79032675 + AT_rich Low_complexity Low_complexity 1 21 0 798 301 101 18 chrX 97941880 97942442 -79031698 - L1ME4a LINE L1 -8 6182 5574 229 333 0 0 chrX 97942575 97942695 -79031445 - L1ME4a LINE L1 -801 5414 5295 401 210 40 0 chrX 97942710 97942810 -79031330 - L1ME1 LINE L1 -9 6157 6054 * 1388 194 68 15 chrX 97942802 97943199 -79030941 - L1ME4a LINE L1 -1346 4869 4452 3810 243 148 18 chrX 97943205 97943753 -79030387 - L1ME4a LINE L1 -2075 4140 3665 2302 82 0 0 chrX 97943753 97944056 -79030084 - AluY SINE Alu -8 303 1 3810 243 148 18 chrX 97944056 97945162 -79028978 - L1ME4a LINE L1 -2550 3665 2271 262 250 80 0 chrX 97945271 97945359 -79028781 - L1ME4a LINE L1 -4639 1576 1482 724 256 99 16 chrX 97945591 97945973 -79028167 - L1ME4a LINE L1 -5268 1128 715 3880 78 17 6 chrX 97945983 97946523 -79027617 - L1PA10 LINE L1 -2 6166 5621 2446 116 6 1 chrX 97946523 97947089 -79027051 + L1PA10 LINE L1 5043 5609 -559 1435 296 32 53 chrX 97947089 97947801 -79026339 - L1ME4a LINE L1 -5671 725 29 902 262 68 73 chrX 97947802 97948374 -79025766 - L1M4 LINE L1 -2704 3442 2874 1740 183 7 0 chrX 97948379 97948663 -79025477 + AluJb SINE Alu 1 286 -26 30 69 0 0 chrX 97948721 97948779 -79025361 + AT_rich Low_complexity Low_complexity 1 58 0 965 135 25 6 chrX 97948779 97948942 -79025198 + L1MD1 LINE L1 6063 6228 -14 27 0 0 0 chrX 97948983 97949010 -79025130 + AT_rich Low_complexity Low_complexity 1 27 0 15433 209 21 10 chrX 97949010 97951436 -79022704 - L1PA15 LINE L1 -7 6809 4412 591 27 0 0 chrX 97951436 97951509 -79022631 + (TG)n Simple_repeat Simple_repeat 2 74 0 15433 209 21 10 chrX 97951509 97954525 -79019615 - L1PA15 LINE L1 -2404 4412 1292 252 352 28 0 chrX 97954550 97954692 -79019448 - L1M4 LINE L1 -3316 2830 2685 394 302 89 55 chrX 97954818 97955255 -79018885 - L1M4 LINE L1 -1081 5065 4614 1903 179 23 1 chrX 97955265 97955633 -79018507 + L1PA16 LINE L1 5709 6118 -41 365 245 21 49 chrX 97955930 97956073 -79018067 + MER103 DNA DNA 12 150 -16 4136 203 38 49 chrX 97956156 97956225 -79017915 - L1M4 LINE L1 -2397 3749 3681 234 0 0 0 chrX 97956225 97956251 -79017889 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4136 203 38 49 chrX 97956251 97957399 -79016741 - L1M4 LINE L1 -2465 3681 2546 1961 199 17 0 chrX 97957397 97957818 -79016322 + L1MA9 LINE L1 4947 5374 -772 * 3970 182 37 30 chrX 97957807 97957958 -79016182 + L1MA9 LINE L1 5318 5466 -846 2768 115 5 39 chrX 97957958 97958400 -79015740 - MSTA LTR MaLR -1 427 1 3970 182 37 30 chrX 97958400 97959187 -79014953 + L1MA9 LINE L1 5466 6263 -49 241 306 0 0 chrX 97959217 97959279 -79014861 + MIR SINE MIR 201 262 0 190 294 165 9 chrX 97959283 97959392 -79014748 + L2 LINE L2 2935 3060 -212 257 269 21 32 chrX 97959455 97959548 -79014592 - MER20B DNA MER1_type -691 92 1 260 252 221 69 chrX 97959996 97960127 -79014013 + MIR SINE MIR 23 173 -89 605 225 6 35 chrX 97960143 97960312 -79013828 + MER96B DNA MER1_type? 17 180 -237 513 313 76 29 chrX 97960764 97961080 -79013060 - L1ME LINE L1 -297 5824 5494 235 175 58 42 chrX 97961094 97961214 -79012926 + (TTAA)n Simple_repeat Simple_repeat 1 122 0 59 53 0 0 chrX 97961230 97961324 -79012816 + AT_rich Low_complexity Low_complexity 1 94 0 527 279 46 55 chrX 97961334 97961897 -79012243 - L1ME LINE L1 -422 5699 5131 2260 241 68 69 chrX 97961938 97962853 -79011287 + L1MA5 LINE L1 16 929 -6280 12852 196 50 16 chrX 97962961 97967800 -79006340 + L1MA5 LINE L1 2351 7357 -5 379 236 38 0 chrX 97968065 97968171 -79005969 - L1 LINE L1 -1300 4846 4737 255 61 0 0 chrX 97968257 97968290 -79005850 + (A)n Simple_repeat Simple_repeat 1 33 0 276 355 35 43 chrX 97968294 97968550 -79005590 - L2 LINE L2 -346 2968 2715 32 43 0 0 chrX 97968754 97968800 -79005340 + AT_rich Low_complexity Low_complexity 1 46 0 785 115 22 7 chrX 97969904 97970043 -79004097 + L1MB4 LINE L1 6040 6180 0 1661 218 74 38 chrX 97970951 97971169 -79002971 - L1ME2 LINE L1 -11 6153 5944 6813 145 37 10 chrX 97971169 97972367 -79001773 + Tigger3b DNA MER2_type 2 1231 0 1661 218 74 38 chrX 97972367 97972704 -79001436 - L1ME2 LINE L1 -220 5944 5578 1655 184 7 3 chrX 97972705 97973028 -79001112 - AluJb SINE Alu 0 324 1 8374 183 37 12 chrX 97973057 97974588 -78999552 + L1MA2 LINE L1 13 1581 -5984 6911 147 15 8 chrX 97974583 97976603 -78997537 + L1MA2 LINE L1 5689 7723 0 * 893 256 6 35 chrX 97976666 97976979 -78997161 + L1MC4 LINE L1 7739 8042 0 1410 190 28 3 chrX 97976998 97977434 -78996706 - L1ME2 LINE L1 -602 5562 5119 752 305 12 35 chrX 97977501 97977757 -78996383 + MIR SINE MIR 13 262 0 255 114 0 0 chrX 97978740 97978784 -78995356 + (CA)n Simple_repeat Simple_repeat 1 44 0 1487 76 0 14 chrX 97978861 97979072 -78995068 + L1PA13 LINE L1 5956 6163 0 374 337 70 6 chrX 97979143 97979315 -78994825 + MIR SINE MIR 3 185 -77 456 287 44 7 chrX 97979456 97979592 -78994548 + LTR16A LTR ERVL 1 141 -309 832 225 111 87 chrX 97979611 97980163 -78993977 - MER34B LTR ERV1 0 565 1 737 260 263 16 chrX 97980236 97980620 -78993520 - L2 LINE L2 -653 2661 2183 532 286 88 11 chrX 97980808 97980990 -78993150 - MIR SINE MIR -5 257 62 557 272 103 19 chrX 97981035 97981248 -78992892 - MIR SINE MIR 0 262 32 230 254 79 0 chrX 97981962 97982025 -78992115 + L2 LINE L2 3246 3313 0 300 27 0 0 chrX 97982895 97982932 -78991208 + (TAA)n Simple_repeat Simple_repeat 2 38 0 740 284 48 98 chrX 97983135 97983592 -78990548 - L3 LINE CR1 -5 1572 1139 188 236 73 0 chrX 97983630 97983685 -78990455 + MIR SINE MIR 131 189 -73 1042 248 40 9 chrX 97983707 97983933 -78990207 - MIR SINE MIR -27 235 3 183 129 0 0 chrX 97983967 97983998 -78990142 + (TA)n Simple_repeat Simple_repeat 1 31 0 233 313 16 0 chrX 97984204 97984268 -78989872 - L2 LINE L2 -3 3269 3205 671 313 52 62 chrX 97984339 97984824 -78989316 - L2 LINE L2 -3 3310 2831 602 265 30 77 chrX 97985341 97985575 -78988565 + MIR SINE MIR 28 250 -12 346 343 50 28 chrX 97985888 97986069 -78988071 - L2 LINE L2 -35 3237 3053 829 73 0 0 chrX 97987231 97987340 -78986800 - L1PB4 LINE L1 -7 6149 6041 523 222 17 8 chrX 97987475 97987592 -78986548 - MER5A DNA MER1_type -6 183 66 235 307 36 6 chrX 97987966 97988079 -78986061 - MIR3 SINE MIR -92 116 4 486 58 0 0 chrX 97988796 97988865 -78985275 - L1PA2 LINE L1 0 6155 6087 1579 167 55 55 chrX 97989039 97989274 -78984866 - LTR37A LTR ERV1 0 426 189 1994 136 0 26 chrX 97989274 97989576 -78984564 + AluSx SINE Alu 3 296 -16 1579 167 55 55 chrX 97989576 97989759 -78984381 - LTR37A LTR ERV1 -236 190 8 503 235 73 79 chrX 97990496 97990680 -78983460 + MIR3 SINE MIR 19 198 -10 866 272 35 0 chrX 97990892 97991124 -78983016 - MIR SINE MIR -3 259 20 452 276 36 39 chrX 97991445 97991600 -78982540 + MIR3 SINE MIR 44 206 -2 198 0 0 0 chrX 97992907 97992929 -78981211 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 245 258 152 0 chrX 97994100 97994166 -78979974 + Charlie8 DNA MER1_type 3 78 -2339 1995 94 4 22 chrX 97994230 97994505 -78979635 + AluSx SINE Alu 1 270 -42 180 313 35 49 chrX 97994724 97994868 -78979272 - MIR SINE MIR -115 147 6 385 194 97 11 chrX 97995049 97995142 -78978998 + L2 LINE L2 3166 3266 -6 306 170 43 32 chrX 97995894 97995988 -78978152 + MER103 DNA DNA 60 154 -12 799 299 24 31 chrX 98196294 98196588 -78777552 - MER77 LTR ERV1 -80 525 234 252 0 0 0 chrX 98196685 98196713 -78777427 + (A)n Simple_repeat Simple_repeat 1 28 0 393 234 13 97 chrX 98196726 98196880 -78777260 - MER77 LTR ERV1 -464 141 1 3899 254 49 93 chrX 98197726 98199388 -78774752 - MER77-int LTR ERV1 -56 4135 2547 300 156 0 133 chrX 98199467 98199557 -78774583 - MER77-int LTR ERV1 -1692 2499 2422 1281 241 40 88 chrX 98199585 98200086 -78774054 - MER77-int LTR ERV1 -1772 2419 1943 351 330 25 32 chrX 98199939 98200218 -78773922 - MER70-int LTR ERVL -2933 2090 1814 * 777 292 4 30 chrX 98200930 98201163 -78772977 - MER77-int LTR ERV1 -2281 1910 1684 3287 305 34 24 chrX 98201231 98202427 -78771713 - MER77-int LTR ERV1 -2966 1225 18 1809 238 101 39 chrX 98202427 98203008 -78771132 - MER77 LTR ERV1 -2 603 6 1323 233 40 49 chrX 98204779 98205225 -78768915 - L1MB8 LINE L1 -2 6176 5735 347 221 25 25 chrX 98205220 98205342 -78768798 - L1MB8 LINE L1 -1714 4432 4311 * 7584 145 10 13 chrX 98205352 98207465 -78766675 - L1MA1 LINE L1 -164 6138 4028 8321 123 25 8 chrX 98207465 98208726 -78765414 + HSMAR1 DNA Mariner 3 1285 -2 7584 145 10 13 chrX 98208726 98208824 -78765316 - L1MA1 LINE L1 -2274 4028 3931 527 192 35 64 chrX 98208827 98208883 -78765257 - L1MB8 LINE L1 -1826 4320 4264 1441 183 31 28 chrX 98208883 98209172 -78764968 - AluJb SINE Alu -20 292 3 527 192 35 64 chrX 98209172 98209287 -78764853 - L1MB8 LINE L1 -1882 4264 4154 1584 125 39 56 chrX 98209289 98209649 -78764491 - L1MA8 LINE L1 -1 6290 5937 474 214 0 31 chrX 98209697 98209795 -78764345 + FRAM SINE Alu 55 149 -27 667 67 91 3 chrX 98209812 98210185 -78763955 + (TA)n Simple_repeat Simple_repeat 1 406 0 425 221 55 0 chrX 98210189 98210316 -78763824 - L1MA8 LINE L1 -2575 5420 5287 1755 60 0 0 chrX 98210316 98210532 -78763608 + THE1A LTR MaLR 1 216 -139 231 154 0 19 chrX 98210533 98210585 -78763555 - L1ME LINE L1 -5128 942 892 372 110 31 90 chrX 98210585 98211135 -78763005 + (TA)n Simple_repeat Simple_repeat 1 517 0 481 47 5 98 chrX 98211147 98211340 -78762800 + (TA)n Simple_repeat Simple_repeat 2 176 0 586 86 27 75 chrX 98211349 98211536 -78762604 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 401 96 32 90 chrX 98211537 98211725 -78762415 + (TA)n Simple_repeat Simple_repeat 2 178 0 230 74 26 111 chrX 98211823 98212012 -78762128 + (TA)n Simple_repeat Simple_repeat 1 173 0 1787 51 0 0 chrX 98212064 98212280 -78761860 - THE1A LTR MaLR -139 216 1 1966 245 61 55 chrX 98212280 98212666 -78761474 + L1ME1 LINE L1 5287 5669 -497 1982 148 0 3 chrX 98212666 98212976 -78761164 - AluSx SINE Alu -3 309 1 1966 245 61 55 chrX 98212976 98213239 -78760901 + L1ME1 LINE L1 5669 5944 -222 1934 144 13 16 chrX 98213239 98213545 -78760595 + AluSx SINE Alu 1 305 -7 1966 245 61 55 chrX 98213545 98213681 -78760459 + L1ME1 LINE L1 5944 6078 -88 266 223 54 45 chrX 98213773 98213885 -78760255 + L1ME1 LINE L1 6060 6331 -3 1592 274 61 28 chrX 98213891 98214724 -78759416 + L1ME2 LINE L1 4441 5301 -845 469 183 19 0 chrX 98214771 98214875 -78759265 - L1MA9 LINE L1 -6 6306 6201 1627 216 85 101 chrX 98214888 98215052 -78759088 + L1ME2 LINE L1 5332 5497 -667 1106 179 10 0 chrX 98215052 98215259 -78758881 - L1PA16 LINE L1 -16 6150 5942 1627 216 85 101 chrX 98215259 98215940 -78758200 + L1ME2 LINE L1 5497 6164 0 240 296 37 59 chrX 98216278 98216413 -78757727 + L1MC/D LINE L1 5392 5523 -598 324 221 32 53 chrX 98216423 98216518 -78757622 - MIR3 SINE MIR -110 98 6 225 154 58 19 chrX 98216619 98216671 -78757469 + LTR13 LTR ERVK 671 724 -283 300 292 21 10 chrX 98216674 98216770 -78757370 + L1MC4 LINE L1 6607 6703 -1339 194 215 0 15 chrX 98216810 98216875 -78757265 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 1568 102 0 0 chrX 98217464 98217660 -78756480 + AluSg/x SINE Alu 84 279 -33 1218 100 0 0 chrX 98217660 98217670 -78756470 + (GAAA)n Simple_repeat Simple_repeat 1 190 0 1218 100 0 0 chrX 98217670 98217850 -78756290 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 351 0 0 0 chrX 98218185 98218224 -78755916 + (CA)n Simple_repeat Simple_repeat 1 39 0 229 267 48 79 chrX 98218909 98219074 -78755066 + L1MC/D LINE L1 5666 5825 -1983 23 0 0 0 chrX 98219330 98219353 -78754787 + AT_rich Low_complexity Low_complexity 1 23 0 4784 251 70 23 chrX 98219692 98223418 -78750722 + L1M4 LINE L1 17 4112 -2532 1003 83 0 4 chrX 98223418 98223635 -78750505 + AluY SINE Alu 1 298 -13 742 263 33 16 chrX 98223637 98223880 -78750260 + L1M4 LINE L1 4109 4355 -2289 1035 228 24 40 chrX 98224445 98224774 -78749366 + L1M4 LINE L1 4351 4674 -1970 4071 217 212 57 chrX 98224788 98227087 -78747053 + L1M3e LINE L1 1 2633 -4474 676 285 74 33 chrX 98227796 98228263 -78745877 - MLT1-int LTR MaLR -765 606 2 515 206 9 19 chrX 98228300 98228407 -78745733 - MLT1F LTR MaLR -436 106 1 567 325 20 62 chrX 98228435 98228727 -78745413 + MER115 DNA AcHobo 1 280 -413 26 0 0 0 chrX 98231329 98231355 -78742785 + AT_rich Low_complexity Low_complexity 1 26 0 671 220 45 28 chrX 98231636 98231813 -78742327 - MER115 DNA AcHobo -12 681 502 360 0 0 0 chrX 98232015 98232055 -78742085 + (TG)n Simple_repeat Simple_repeat 2 41 0 438 172 5 220 chrX 98232063 98232249 -78741891 - MLT1E LTR MaLR -440 153 8 1621 203 57 33 chrX 98233443 98233855 -78740285 - MER74B LTR ERVL -86 536 123 1406 146 36 16 chrX 98233952 98234205 -78739935 - HERVL74 LTR ERVL -42 5643 5386 * 1610 146 61 41 chrX 98234202 98234544 -78739596 - HERVL74 LTR ERVL -434 5251 4903 681 184 125 36 chrX 98234561 98234729 -78739411 - FRAM SINE Alu 0 176 1 1324 203 38 13 chrX 98234729 98235050 -78739090 - MER39 LTR ERV1 -23 684 323 1556 147 91 47 chrX 98235054 98235419 -78738721 + THE1C LTR MaLR 1 391 -37 1983 155 0 3 chrX 98235419 98235729 -78738411 - AluSx SINE Alu -3 309 1 1556 147 91 47 chrX 98235729 98235769 -78738371 + THE1C LTR MaLR 391 428 0 247 224 47 35 chrX 98235826 98235911 -78738229 - LTR48B LTR ERV1 -558 86 1 1601 150 44 34 chrX 98235911 98236327 -78737813 - HERVL74 LTR ERVL -773 4912 4501 1905 159 0 0 chrX 98236327 98236629 -78737511 + AluJb SINE Alu 1 302 -10 1601 150 44 34 chrX 98236629 98236686 -78737454 - HERVL74 LTR ERVL -1184 4501 3908 919 182 0 0 chrX 98236688 98236842 -78737298 - HERVL74 LTR ERVL -2042 3643 3490 1200 197 17 21 chrX 98236847 98237080 -78737060 - HERVL74 LTR ERVL -2356 3329 3098 3514 176 32 9 chrX 98237092 98237972 -78736168 - HERVL74 LTR ERVL -3210 2475 1502 3355 105 36 40 chrX 98238194 98238806 -78735334 - MER4B LTR ERV1 0 779 1 2555 101 17 47 chrX 98238806 98239212 -78734928 - MER4B-int LTR ERV1 0 6758 6365 31655 107 20 34 chrX 98239258 98241805 -78732335 - MER4B-int LTR ERV1 -413 6345 3764 2176 120 3 0 chrX 98241805 98242105 -78732035 - AluSg SINE Alu -9 301 1 31655 107 20 34 chrX 98242105 98242269 -78731871 - MER4B-int LTR ERV1 -2994 3764 3599 2022 53 0 0 chrX 98242269 98242516 -78731624 + L1PA7 LINE L1 5895 6141 -13 31655 107 20 34 chrX 98242516 98244900 -78729240 - MER4B-int LTR ERV1 -3159 3599 1321 2278 56 164 240 chrX 98244899 98245528 -78728612 - LTR12 LTR ERV1 -133 581 1 * 6994 113 14 22 chrX 98245529 98246112 -78728028 - MER4B-int LTR ERV1 -5435 1323 752 2748 126 98 94 chrX 98246112 98246773 -78727367 - MER4A LTR ERV1 0 664 1 6994 113 14 22 chrX 98246773 98247284 -78726856 - MER4B-int LTR ERV1 -6006 752 238 261 156 0 22 chrX 98247280 98247325 -78726815 - MER4B-int LTR ERV1 -5949 809 766 * 1654 147 64 4 chrX 98247330 98247596 -78726544 - MER4B-int LTR ERV1 -6476 282 1 2642 140 97 2 chrX 98247596 98248156 -78725984 - MER4B LTR ERV1 0 779 1 965 196 24 10 chrX 98248185 98248394 -78725746 + MER93a LTR ERV1 191 402 0 1963 170 75 7 chrX 98248394 98248823 -78725317 - HERVL74 LTR ERVL -4175 1510 1053 30 0 0 0 chrX 98248827 98248857 -78725283 + AT_rich Low_complexity Low_complexity 1 30 0 280 303 187 11 chrX 98250694 98250961 -78723179 - MLT1-int LTR MaLR -765 606 293 386 222 0 59 chrX 98251192 98251327 -78722813 - L1M4 LINE L1 -1860 4286 4160 474 186 120 36 chrX 98251352 98251519 -78722621 - L1M4 LINE L1 -3729 2417 2237 1410 176 16 3 chrX 98251860 98252178 -78721962 + L1 LINE L1 4370 4691 -1455 626 225 75 21 chrX 98253469 98253818 -78720322 + MER31B LTR ERV1 11 508 -6 543 285 0 0 chrX 98253928 98254065 -78720075 + MER31B-int LTR ERV1 37 173 -4763 1240 163 16 65 chrX 98254403 98254710 -78719430 + MER31B-int LTR ERV1 1003 1294 -3642 653 180 12 35 chrX 98254752 98254924 -78719216 + MER31B-int LTR ERV1 1287 1454 -3482 1284 199 61 32 chrX 98254964 98255310 -78718830 + MER31B-int LTR ERV1 4561 4916 -20 731 236 19 14 chrX 98255310 98255703 -78718437 + MER31B LTR ERV1 1 514 0 268 314 5 48 chrX 98255868 98256056 -78718084 + (TG)n Simple_repeat Simple_repeat 1 180 0 2598 158 14 7 chrX 98256432 98256851 -78717289 + MSTB LTR MaLR 1 422 -4 320 340 0 7 chrX 98258269 98258422 -78715718 + (TG)n Simple_repeat Simple_repeat 1 152 0 17897 183 39 14 chrX 98259265 98260396 -78713744 - L1PA13 LINE L1 -1 6813 5711 2102 132 0 0 chrX 98260396 98260691 -78713449 - AluSx SINE Alu -17 295 1 17897 183 39 14 chrX 98260691 98266189 -78707951 - L1PA13 LINE L1 -1103 5711 1 236 271 8 34 chrX 98267365 98267483 -78706657 + (TG)n Simple_repeat Simple_repeat 2 116 0 223 381 0 17 chrX 98267857 98268030 -78706110 + (TG)n Simple_repeat Simple_repeat 2 171 0 * 282 299 32 13 chrX 98267994 98268151 -78705989 + (TATG)n Simple_repeat Simple_repeat 4 163 0 200 296 12 41 chrX 98268911 98269083 -78705057 + (TATG)n Simple_repeat Simple_repeat 4 170 0 2170 115 0 37 chrX 98269420 98269743 -78704397 - AluSx SINE Alu -1 311 1 222 389 0 6 chrX 98270222 98270462 -78703678 + (TG)n Simple_repeat Simple_repeat 1 238 0 319 326 7 7 chrX 98270512 98270647 -78703493 + (TG)n Simple_repeat Simple_repeat 2 136 0 192 216 0 0 chrX 98270793 98270844 -78703296 + (TG)n Simple_repeat Simple_repeat 2 52 0 220 374 0 0 chrX 98271246 98271369 -78702771 + (TG)n Simple_repeat Simple_repeat 1 123 0 2143 194 36 0 chrX 98272019 98272432 -78701708 - MSTA LTR MaLR 0 428 1 2264 99 10 10 chrX 98272618 98272931 -78701209 - AluSp SINE Alu 0 313 1 282 356 6 6 chrX 98273018 98273192 -78700948 + (TG)n Simple_repeat Simple_repeat 1 174 0 202 370 12 6 chrX 98273152 98273317 -78700823 + (TGAG)n Simple_repeat Simple_repeat 1 166 0 * 1388 159 34 4 chrX 98273466 98273699 -78700441 + L1PA13 LINE L1 11 250 -6537 * 17575 171 17 13 chrX 98273697 98275835 -78698305 + L1PA13 LINE L1 2226 4354 -2460 1959 128 10 36 chrX 98275835 98276139 -78698001 + AluSx SINE Alu 1 296 -16 17575 171 17 13 chrX 98276139 98277791 -78696349 + L1PA13 LINE L1 4354 6049 -765 2134 146 8 19 chrX 98277791 98278168 -78695972 - THE1C LTR MaLR -2 373 1 17575 171 17 13 chrX 98278168 98278938 -78695202 + L1PA13 LINE L1 6049 6814 0 390 42 0 0 chrX 98280256 98280304 -78693836 + (TA)n Simple_repeat Simple_repeat 1 48 0 810 332 6 6 chrX 98282136 98282467 -78691673 - LTR52-int LTR ERVL -750 2806 2476 312 285 85 51 chrX 98282887 98283122 -78691018 - LTR52-int LTR ERVL -3622 2063 1821 13317 26 0 0 chrX 98284221 98286560 -78687580 - L1PA3 LINE L1 0 6155 3816 240 0 0 0 chrX 98286560 98286589 -78687551 + L1PA3 LINE L1 3772 3800 -2346 2247 187 34 52 chrX 98288097 98288653 -78685487 - LTR55 LTR ERV -2 546 1 231 364 0 8 chrX 98288939 98289071 -78685069 + (TG)n Simple_repeat Simple_repeat 2 132 0 354 333 6 0 chrX 98289272 98289428 -78684712 + (TG)n Simple_repeat Simple_repeat 1 157 0 232 375 11 0 chrX 98289673 98289856 -78684284 + (TG)n Simple_repeat Simple_repeat 1 180 -357 2207 106 3 0 chrX 98289856 98290148 -78683992 + AluSg SINE Alu 1 293 -17 232 375 11 0 chrX 98290148 98290204 -78683936 + (TG)n Simple_repeat Simple_repeat 180 537 0 294 343 0 0 chrX 98290395 98290538 -78683602 + (TG)n Simple_repeat Simple_repeat 1 143 0 215 284 0 52 chrX 98290971 98291105 -78683035 + (TATG)n Simple_repeat Simple_repeat 3 129 0 261 351 18 6 chrX 98291258 98291426 -78682714 + (TG)n Simple_repeat Simple_repeat 1 170 0 370 326 12 0 chrX 98291593 98291765 -78682375 + (TG)n Simple_repeat Simple_repeat 1 174 0 319 375 6 0 chrX 98291785 98291961 -78682179 + (TG)n Simple_repeat Simple_repeat 2 178 0 218 397 0 0 chrX 98292995 98293141 -78680999 + (TG)n Simple_repeat Simple_repeat 2 147 0 398 382 20 20 chrX 98293946 98294098 -78680042 + MER91A DNA MER1_type 42 193 -3 396 0 0 0 chrX 98295365 98295409 -78678731 + (CA)n Simple_repeat Simple_repeat 2 45 0 217 330 106 50 chrX 98296116 98296398 -78677742 - L2 LINE L2 -657 2657 2360 342 0 0 0 chrX 98297912 98297950 -78676190 + (TG)n Simple_repeat Simple_repeat 1 38 0 2567 204 34 2 chrX 98298595 98299096 -78675044 - LTR53 LTR ERVL -2 517 1 2658 147 16 5 chrX 98299221 98299644 -78674496 + MSTA LTR MaLR 1 428 0 5387 208 40 16 chrX 98299917 98300206 -78673934 - HERVL74 LTR ERVL -2331 3354 3073 3173 184 28 55 chrX 98300206 98300876 -78673264 - MER82 DNA MER2_type -1 652 1 5387 208 40 16 chrX 98300876 98300902 -78673238 - HERVL74 LTR ERVL -2612 3073 3049 1702 195 28 38 chrX 98300902 98301296 -78672844 - MLT1B LTR MaLR 0 390 1 5387 208 40 16 chrX 98301296 98302214 -78671926 - HERVL74 LTR ERVL -2636 3049 2091 3680 174 30 18 chrX 98302231 98302900 -78671240 - HERVL74 LTR ERVL -1372 2184 1482 1902 146 18 0 chrX 98302900 98303224 -78670916 - AluSx SINE Alu 0 329 1 3680 174 30 18 chrX 98303224 98303400 -78670740 - HERVL74 LTR ERVL -2074 1482 1310 881 155 0 7 chrX 98304204 98304352 -78669788 - MER50 LTR ERV1 -130 604 458 2610 136 33 2 chrX 98305734 98306153 -78667987 - MSTB1 LTR MaLR 0 432 1 374 296 120 15 chrX 98306457 98306611 -78667529 - MIR3 SINE MIR -9 199 32 4949 138 43 8 chrX 98306700 98307606 -78666534 - Tigger3b DNA MER2_type -10 1221 284 382 214 124 0 chrX 98307609 98307698 -78666442 - Tigger3b DNA MER2_type -1129 102 3 234 270 16 0 chrX 98307779 98307842 -78666298 + L2 LINE L2 3250 3313 0 249 392 42 6 chrX 98307880 98308046 -78666094 - L2 LINE L2 -527 2787 2616 28 0 0 0 chrX 98308122 98308150 -78665990 + AT_rich Low_complexity Low_complexity 1 28 0 317 336 30 37 chrX 98308324 98308622 -78665518 + L1MEd LINE L1 517 812 -5307 2121 100 10 3 chrX 98308670 98308961 -78665179 + AluY SINE Alu 1 293 -18 38176 71 7 3 chrX 98309034 98315149 -78658991 + L1PA6 LINE L1 11 6148 -6 515 268 49 36 chrX 98315290 98315621 -78658519 + L1MEd LINE L1 985 1359 -4862 1663 157 37 37 chrX 98316023 98316322 -78657818 - AluJb SINE Alu -13 299 1 423 335 17 23 chrX 98316537 98316710 -78657430 + L3 LINE CR1 1399 1570 -7 185 244 0 0 chrX 98317290 98317331 -78656809 + MIR SINE MIR 120 160 -102 355 276 57 69 chrX 98318214 98318556 -78655584 + MLT1I LTR MaLR 68 402 -7 879 174 0 7 chrX 98318672 98318810 -78655330 + AluJo SINE Alu 1 137 -175 180 0 0 0 chrX 98318973 98318993 -78655147 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1914 244 61 47 chrX 98318993 98319901 -78654239 - L2 LINE L2 -14 3299 2369 3001 182 14 53 chrX 98319928 98320757 -78653383 - L1MB3 LINE L1 -2 6169 5315 214 29 57 0 chrX 98320757 98320792 -78653348 + (TTG)n Simple_repeat Simple_repeat 3 39 0 2534 152 113 0 chrX 98320815 98321295 -78652845 - L1PA16 LINE L1 -2 6164 5631 796 217 97 27 chrX 98321300 98321600 -78652540 - L1MB3 LINE L1 -881 5265 4945 466 214 190 3 chrX 98322120 98322312 -78651828 + MIR SINE MIR 21 258 -4 355 341 87 0 chrX 98322343 98322481 -78651659 + L3 LINE CR1 1425 1574 -3 190 261 36 81 chrX 98322969 98323080 -78651060 + L2 LINE L2 2550 2655 -659 414 138 0 96 chrX 98324638 98324714 -78649426 - MIR SINE MIR -73 189 123 884 226 78 9 chrX 98324714 98324944 -78649196 + MIR SINE MIR 3 248 -14 198 231 15 77 chrX 98325999 98326064 -78648076 - L2 LINE L2 -1 3312 3252 515 274 76 0 chrX 98326252 98326409 -78647731 + L2 LINE L2 2476 2644 -670 681 282 189 18 chrX 98327011 98327506 -78646634 + L2 LINE L2 2630 3229 -84 760 81 0 0 chrX 98328555 98328654 -78645486 + HY3 scRNA scRNA 2 100 -1 24 0 0 0 chrX 98328654 98328678 -78645462 + AT_rich Low_complexity Low_complexity 1 24 0 769 294 82 36 chrX 98328904 98329462 -78644678 - L1ME3A LINE L1 -15 6155 5572 293 320 111 10 chrX 98329463 98329878 -78644262 - L1ME3A LINE L1 -3204 2942 2486 536 258 60 94 chrX 98329878 98330443 -78643697 + L1ME3A LINE L1 2457 3002 -3144 767 272 90 7 chrX 98330542 98330954 -78643186 + L1ME3A LINE L1 4383 4828 -1318 612 338 62 14 chrX 98330955 98331245 -78642895 + L2 LINE L2 300 603 -2711 403 353 70 57 chrX 98331724 98332176 -78641964 + L2 LINE L2 2552 3022 -250 213 325 57 41 chrX 98332288 98332411 -78641729 + L2 LINE L2 3188 3312 -1 346 273 0 74 chrX 98333693 98333814 -78640326 + L2 LINE L2 3200 3311 -2 182 268 0 70 chrX 98333872 98333943 -78640197 - L2 LINE L2 -334 2938 2873 209 341 41 8 chrX 98334036 98334159 -78639981 - L2 LINE L2 -594 2720 2594 501 234 24 42 chrX 98334162 98334329 -78639811 + L1ME3A LINE L1 5483 5646 -516 1262 178 28 0 chrX 98334345 98334558 -78639582 - MER20 DNA MER1_type 0 219 1 398 239 18 25 chrX 98334640 98334803 -78639337 + L1ME3A LINE L1 5786 5947 -223 275 286 73 45 chrX 98334854 98335032 -78639108 + L1ME3A LINE L1 5963 6145 -25 23 0 0 0 chrX 98335628 98335651 -78638489 + AT_rich Low_complexity Low_complexity 1 23 0 383 337 22 33 chrX 98335826 98336007 -78638133 - MIR3 SINE MIR 0 208 30 442 258 0 0 chrX 98336053 98336150 -78637990 - MIR3 SINE MIR -16 192 96 349 263 141 19 chrX 98336273 98336429 -78637711 - MLT1K LTR MaLR -17 571 397 2158 237 113 12 chrX 98337245 98337831 -78636309 - MLT2F LTR ERVL -13 650 6 257 333 25 8 chrX 98338721 98338851 -78635289 + MIR SINE MIR 30 160 -66 411 176 0 0 chrX 98339386 98339477 -78634663 + CT-rich Low_complexity Low_complexity 1 91 0 1025 256 97 35 chrX 98340031 98340484 -78633656 + LTR33 LTR ERVL 1 481 -40 1330 275 25 55 chrX 98340485 98341085 -78633055 + L1ME1 LINE L1 5572 6153 -13 4423 264 69 12 chrX 98341100 98343229 -78630911 + L1MC/D LINE L1 2274 4524 -1622 2141 155 32 37 chrX 98343457 98343651 -78630489 + MSTB1 LTR MaLR 1 194 -238 919 37 0 0 chrX 98343651 98343828 -78630312 + L1PA3 LINE L1 6040 6216 0 2141 155 32 37 chrX 98343828 98344064 -78630076 + MSTB1 LTR MaLR 194 430 -2 1114 227 39 6 chrX 98344066 98344397 -78629743 + L1MC/D LINE L1 4653 4994 -1152 451 163 0 25 chrX 98344399 98344479 -78629661 + L1MC1 LINE L1 6239 6316 -17 520 251 82 21 chrX 98344519 98344762 -78629378 + L1MC/D LINE L1 4982 5239 -907 273 29 0 0 chrX 98344766 98344800 -78629340 + (CA)n Simple_repeat Simple_repeat 1 34 0 768 200 162 48 chrX 98344801 98345091 -78629049 + L1MC/D LINE L1 5285 5607 -737 301 274 113 76 chrX 98345140 98345468 -78628672 - L1MEc LINE L1 -5039 1357 1018 1959 184 81 25 chrX 98345835 98346280 -78627860 - MLT2B1 LTR ERVL -50 470 1 4410 142 35 16 chrX 98346281 98346886 -78627254 - ERVL-B1 LTR ERVL -8 5756 5131 2017 115 3 104 chrX 98346886 98347260 -78626880 + MER1B DNA MER1_type 2 337 0 4410 142 35 16 chrX 98347260 98347429 -78626711 - ERVL-B1 LTR ERVL -633 5131 4967 964 168 42 5 chrX 98347432 98347646 -78626494 - L1MA9 LINE L1 0 6312 6091 649 153 8 15 chrX 98347648 98347779 -78626361 - L1MA9 LINE L1 -639 5673 5544 1544 162 15 25 chrX 98347781 98348108 -78626032 - L1MA9 LINE L1 -1734 4412 4089 2938 205 41 46 chrX 98348114 98348427 -78625713 - L1MA9 LINE L1 -2619 3527 3214 2405 101 0 0 chrX 98348427 98348734 -78625406 - AluSg SINE Alu -3 307 1 2938 205 41 46 chrX 98348734 98349397 -78624743 - L1MA9 LINE L1 -2932 3214 2556 6191 200 9 13 chrX 98349405 98350993 -78623147 + L1P5 LINE L1 3877 5454 -697 399 80 84 33 chrX 98350994 98351293 -78622847 + (TA)n Simple_repeat Simple_repeat 1 314 0 372 184 34 50 chrX 98351293 98351472 -78622668 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 1228 247 110 6 chrX 98351540 98351904 -78622236 - MLT2B1 LTR ERVL -116 404 3 4336 218 4 10 chrX 98352040 98353097 -78621043 + L1PB1 LINE L1 2941 3990 -2156 4440 83 27 5 chrX 98353097 98354102 -78620038 + MER11A LTR ERVK 1 1266 0 6327 174 11 0 chrX 98354103 98356218 -78617922 + L1PB1 LINE L1 3986 6114 -37 4710 109 1 0 chrX 98356280 98356965 -78617175 + L1PA14 LINE L1 5476 6161 0 184 283 0 0 chrX 98357299 98357345 -78616795 - MIR SINE MIR -212 50 5 704 243 33 0 chrX 98358099 98358280 -78615860 + MER90 LTR ERV1 3 189 -386 836 244 62 12 chrX 98358303 98358545 -78615595 + MER90 LTR ERV1 361 614 0 215 284 0 11 chrX 98358820 98358915 -78615225 + GA-rich Low_complexity Low_complexity 4 97 0 397 287 85 36 chrX 98359152 98359493 -78614647 + LTR50 LTR ERVL 302 523 0 1724 98 12 0 chrX 98359754 98359999 -78614141 - L1PB1 LINE L1 -1 6150 5903 1787 137 0 57 chrX 98360025 98360372 -78613768 - AluJb SINE Alu 0 330 1 27 49 0 0 chrX 98360660 98360701 -78613439 + AT_rich Low_complexity Low_complexity 1 41 0 1382 139 171 16 chrX 98360889 98361147 -78612993 + AluSg SINE Alu 1 298 -2 241 282 74 31 chrX 98361296 98361459 -78612681 - L1MC/D LINE L1 -1953 5855 5686 2916 173 18 6 chrX 98361841 98362351 -78611789 - LTR45 LTR ERV1 -7 518 3 386 168 70 2 chrX 98362479 98362619 -78611521 - MER53 DNA DNA 0 189 9 22 35 0 0 chrX 98362977 98363006 -78611134 + AT_rich Low_complexity Low_complexity 1 29 0 533 207 0 16 chrX 98363172 98363293 -78610847 - L1MA9 LINE L1 -14 6298 6180 1187 159 22 18 chrX 98363296 98363522 -78610618 - L1MA9 LINE L1 -232 6080 5854 944 244 37 15 chrX 98363514 98363785 -78610355 - L1MDb LINE L1 -5411 1132 856 * 662 321 48 19 chrX 98363983 98364298 -78609842 - L1MDb LINE L1 -6199 341 18 44 46 0 0 chrX 98365539 98365604 -78608536 + AT_rich Low_complexity Low_complexity 1 65 0 286 253 71 19 chrX 98365635 98365789 -78608351 + L1M4 LINE L1 4530 4691 -1455 242 184 0 0 chrX 98365794 98365832 -78608308 - MER34 LTR ERV1 -1 541 504 3622 145 99 9 chrX 98365832 98366488 -78607652 - MER4D LTR ERV1 -9 894 180 920 117 37 25 chrX 98366488 98366651 -78607489 + L1PA10 LINE L1 5897 6061 -107 757 75 0 0 chrX 98367054 98367161 -78606979 - L1MA1 LINE L1 0 6302 6196 750 73 0 45 chrX 98367168 98367278 -78606862 + L1PA10 LINE L1 6062 6166 -2 219 114 0 0 chrX 98367348 98367383 -78606757 + (TA)n Simple_repeat Simple_repeat 2 36 0 238 186 0 0 chrX 98367385 98367428 -78606712 + L1M3 LINE L1 5805 5847 -487 1097 129 5 72 chrX 98367431 98367640 -78606500 - MER4D LTR ERV1 -708 195 1 1071 202 83 150 chrX 98367640 98368005 -78606135 - MER34 LTR ERV1 -36 506 189 1518 145 15 4 chrX 98368005 98368267 -78605873 - L1PA10 LINE L1 -3 6165 5901 1071 202 83 150 chrX 98368267 98368435 -78605705 - MER34 LTR ERV1 -353 189 11 2160 174 97 26 chrX 98368495 98368950 -78605190 + MER4E LTR ERV1 1 487 -292 1988 173 3 32 chrX 98368946 98369316 -78604824 + MER4E LTR ERV1 413 771 -8 * 15621 160 12 10 chrX 98369700 98373046 -78601094 - L1MA1 LINE L1 0 7721 4361 2336 100 19 40 chrX 98373046 98373416 -78600724 - THE1B LTR MaLR -2 362 1 15621 160 12 10 chrX 98373416 98374708 -78599432 - L1MA1 LINE L1 -3360 4361 3073 2181 173 13 0 chrX 98374712 98375106 -78599034 - MER57A LTR ERV1 -4 399 1 33249 88 42 30 chrX 98375106 98380108 -78594032 - MER57A-int LTR ERV1 0 7537 2476 4099 109 69 25 chrX 98380107 98380482 -78593658 - MER57A-int LTR ERV1 -5166 2371 1955 * 207 0 0 0 chrX 98380482 98380505 -78593635 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4099 109 69 25 chrX 98380505 98380768 -78593372 - MER57A-int LTR ERV1 -5582 1955 1705 * 5022 116 20 1 chrX 98380760 98381973 -78592167 - MER57A-int LTR ERV1 -6259 1278 1 2393 145 18 0 chrX 98381978 98382370 -78591770 - MER57A LTR ERV1 -4 399 1 9760 176 37 10 chrX 98382370 98383638 -78590502 - L1MA1 LINE L1 -4489 3076 1454 366 23 0 0 chrX 98383638 98383681 -78590459 + (TC)n Simple_repeat Simple_repeat 2 44 0 9760 176 37 10 chrX 98383681 98384272 -78589868 - L1MA1 LINE L1 -6111 1454 880 2470 272 30 32 chrX 98384303 98385107 -78589033 + MER77-int LTR ERV1 3422 4223 -2535 777 292 4 30 chrX 98385183 98385416 -78588724 + MER77-int LTR ERV1 1684 1910 -2281 351 330 25 32 chrX 98386128 98386407 -78587733 + MER70-int LTR ERVL 1814 2090 -2933 * 1267 244 40 88 chrX 98386260 98386761 -78587379 + MER77-int LTR ERV1 1943 2419 -1772 300 156 0 133 chrX 98386789 98386879 -78587261 + MER77-int LTR ERV1 2422 2499 -1692 3876 255 49 93 chrX 98386958 98388620 -78585520 + MER77-int LTR ERV1 2547 4135 -56 393 234 13 97 chrX 98389466 98389620 -78584520 + MER77 LTR ERV1 1 141 -464 252 0 0 0 chrX 98389633 98389661 -78584479 + (T)n Simple_repeat Simple_repeat 1 28 0 1175 283 22 24 chrX 98389758 98390129 -78584011 + MER77 LTR ERV1 234 603 -2 224 207 0 73 chrX 98390281 98390363 -78583777 + GA-rich Low_complexity Low_complexity 3 78 0 261 0 0 0 chrX 98393639 98393668 -78580472 + (CA)n Simple_repeat Simple_repeat 2 30 0 774 254 9 47 chrX 98393684 98393916 -78580224 - MER58A DNA MER1_type -1 223 1 234 288 151 37 chrX 98394467 98394766 -78579374 + LTR50 LTR ERVL 216 548 -247 1972 125 18 108 chrX 98395087 98395307 -78578833 - THE1B LTR MaLR 0 364 195 2313 88 3 0 chrX 98395307 98395615 -78578525 - AluY SINE Alu -2 309 1 1972 125 18 108 chrX 98395615 98395794 -78578346 - THE1B LTR MaLR -169 195 1 189 0 0 0 chrX 98396375 98396396 -78577744 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 504 282 0 12 chrX 98396635 98396798 -78577342 + L1M4 LINE L1 3947 4107 -2039 346 311 53 13 chrX 98400501 98400726 -78573414 - LTR50 LTR ERVL -121 674 441 476 184 237 16 chrX 98400967 98401157 -78572983 - LTR50 LTR ERVL -542 253 22 414 85 0 0 chrX 98401865 98401924 -78572216 + (CA)n Simple_repeat Simple_repeat 2 60 0 516 298 0 19 chrX 98402968 98403129 -78571011 + MER63A DNA MER1_type 53 210 0 334 339 59 0 chrX 98403373 98403491 -78570649 + MIR SINE MIR 35 159 -103 441 172 59 59 chrX 98403509 98403695 -78570445 + Charlie1 DNA MER1_type 2526 2711 -50 385 301 0 20 chrX 98405582 98405735 -78568405 - L1M4 LINE L1 -2048 4098 3949 1977 125 18 108 chrX 98406592 98406771 -78567369 + THE1B LTR MaLR 1 126 -238 2323 88 3 0 chrX 98406771 98407079 -78567061 + AluY SINE Alu 1 309 -2 1977 125 18 108 chrX 98407079 98407299 -78566841 + THE1B LTR MaLR 126 364 0 245 339 32 0 chrX 98407620 98407744 -78566396 - LTR50 LTR ERVL -247 548 421 762 254 9 47 chrX 98408470 98408702 -78565438 + MER58A DNA MER1_type 1 223 -1 261 0 0 0 chrX 98408718 98408747 -78565393 + (TG)n Simple_repeat Simple_repeat 2 30 0 224 207 0 73 chrX 98412023 98412105 -78562035 + CT-rich Low_complexity Low_complexity 3 78 0 543 192 10 0 chrX 98412257 98412361 -78561779 - MER77 LTR ERV1 -2 603 499 15564 115 15 10 chrX 98412382 98414884 -78559256 - HERV9 LTR ERV1 -1994 444 3 359 167 33 22 chrX 98414884 98414974 -78559166 - LTR30 LTR ERV1 -79 643 553 1358 104 153 1 chrX 98414975 98415224 -78558916 - LTR12 LTR ERV1 -406 2032 58 248 231 0 0 chrX 98415224 98415276 -78558864 - LTR30 LTR ERV1 -670 52 1 228 152 0 65 chrX 98416204 98416250 -78557890 + polypyrimidine Low_complexity Low_complexity 1 43 0 2940 197 42 3 chrX 98416735 98417399 -78556741 - L1ME1 LINE L1 -11 6950 6261 37450 35 3 1 chrX 98417448 98417823 -78556317 - L1PA4 LINE L1 -3 6152 5779 2765 23 0 0 chrX 98417823 98418131 -78556009 - AluY SINE Alu -2 309 2 37450 35 3 1 chrX 98418131 98423298 -78550842 - L1PA4 LINE L1 -376 5779 600 4663 220 74 31 chrX 98423295 98425048 -78549092 - L1ME1 LINE L1 -727 6234 4401 * 1868 278 96 70 chrX 98425085 98426144 -78547996 - L1ME1 LINE L1 -5321 1102 16 662 207 131 17 chrX 98426328 98426575 -78547565 - L1MD2 LINE L1 -9 6157 5900 272 218 39 13 chrX 98426728 98426806 -78547334 + MIR SINE MIR 183 262 0 26 0 0 0 chrX 98427116 98427142 -78546998 + AT_rich Low_complexity Low_complexity 1 26 0 2417 63 0 26 chrX 98427265 98427567 -78546573 - AluY SINE Alu -13 298 5 500 283 28 71 chrX 98427761 98428086 -78546054 - MLT1J LTR MaLR -200 311 1 1092 290 44 26 chrX 98428169 98428597 -78545543 + MLT1J2 LTR MaLR 1 436 -14 21 0 0 0 chrX 98428663 98428684 -78545456 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 98428905 98428926 -78545214 + AT_rich Low_complexity Low_complexity 1 21 0 2651 48 0 0 chrX 98428982 98429291 -78544849 + AluY SINE Alu 1 309 -2 254 314 0 43 chrX 98429403 98429613 -78544527 + L1M4 LINE L1 4456 4656 -1490 21 0 0 0 chrX 98430548 98430569 -78543571 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrX 98431167 98431194 -78542946 + AT_rich Low_complexity Low_complexity 1 27 0 522 278 80 6 chrX 98432907 98433083 -78541057 + MER5A DNA MER1_type 1 189 0 225 0 0 0 chrX 98437240 98437265 -78536875 + (CA)n Simple_repeat Simple_repeat 2 26 0 286 228 215 6 chrX 98437272 98437430 -78536710 + MER69 DNA AcHobo 2323 2513 -13 2022 123 53 42 chrX 98437591 98437948 -78536192 - THE1B LTR MaLR -3 361 1 11644 93 8 11 chrX 98437948 98439534 -78534606 - THE1B-int LTR MaLR 0 1580 1 2139 119 57 25 chrX 98439534 98439887 -78534253 - THE1B LTR MaLR 0 364 1 624 78 35 0 chrX 98440659 98440775 -78533365 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 311 330 10 6 chrX 98441452 98441670 -78532470 + ERVL LTR ERVL 1263 1505 -3491 1708 127 4 0 chrX 98441782 98442074 -78532066 + AluY SINE Alu 36 328 0 622 353 60 20 chrX 98442128 98443301 -78530839 + ERVL LTR ERVL 3086 4318 -1336 346 319 58 47 chrX 98443345 98443536 -78530604 + LTR16C LTR ERVL 299 491 0 883 256 30 27 chrX 98443700 98444067 -78530073 + L1ME LINE L1 3044 3411 -2735 2203 118 0 0 chrX 98445452 98445741 -78528399 + AluSg SINE Alu 1 289 -21 360 280 0 20 chrX 98445757 98445857 -78528283 + L1M4 LINE L1 15 112 -6430 489 270 35 0 chrX 98446083 98446198 -78527942 + L2 LINE L2 3191 3309 -4 24 0 0 0 chrX 98447508 98447532 -78526608 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 98447790 98447819 -78526321 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 98447932 98447954 -78526186 + AT_rich Low_complexity Low_complexity 1 22 0 473 375 27 30 chrX 98448301 98448600 -78525540 + L1M4 LINE L1 125 422 -6222 976 219 70 93 chrX 98448665 98449136 -78525004 + L1ME LINE L1 4964 5397 -767 4991 43 2 0 chrX 98449136 98449738 -78524402 + L1PA6 LINE L1 5551 6153 -1 976 219 70 93 chrX 98449738 98449960 -78524180 + L1ME LINE L1 5397 5623 -541 1414 82 21 0 chrX 98649960 98650154 -78323986 - L1PA10 LINE L1 -108 6060 5863 1534 262 135 36 chrX 98650258 98650792 -78323348 + MLT1E2 LTR MaLR 37 623 -3 549 344 75 5 chrX 98650798 98651199 -78322941 + L1MEc LINE L1 1387 1815 -4581 379 297 36 18 chrX 98651206 98651371 -78322769 + L1MEc LINE L1 1858 2025 -4371 25 0 0 0 chrX 98651372 98651397 -78322743 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 98651408 98651430 -78322710 + AT_rich Low_complexity Low_complexity 1 22 0 671 230 88 14 chrX 98651430 98651647 -78322493 - L1PA16 LINE L1 -9 6157 5925 1093 308 30 15 chrX 98651924 98652355 -78321785 - ERVL LTR ERVL -3466 2019 1619 296 309 88 56 chrX 98652358 98652643 -78321497 - ERVL LTR ERVL -4154 1500 1207 451 338 22 0 chrX 98652736 98652875 -78321265 + HERVL LTR ERVL 4048 4189 -1465 * 1151 343 17 15 chrX 98652856 98653622 -78320518 + HERVL LTR ERVL 4297 5100 -664 4950 12 0 2 chrX 98654942 98655511 -78318629 - L1PA3 LINE L1 -1 6154 5587 2760 21 17 0 chrX 98655511 98655887 -78318253 + L1P LINE L1 5048 5427 -728 324 0 0 0 chrX 98656239 98656275 -78317865 + (TG)n Simple_repeat Simple_repeat 2 37 0 415 267 69 0 chrX 98656321 98656437 -78317703 - MER20B DNA MER1_type -593 190 67 444 224 134 0 chrX 98656462 98656596 -78317544 + L1ME LINE L1 5650 5801 -361 457 252 59 0 chrX 98657540 98657659 -78316481 + MIR SINE MIR 56 181 -81 805 78 0 0 chrX 98657801 98657953 -78316187 + AluY SINE Alu 181 332 0 254 346 55 16 chrX 98658306 98658433 -78315707 + L1ME3A LINE L1 140 271 -5934 1347 252 28 6 chrX 98658671 98659028 -78315112 + MLT1A1 LTR MaLR 1 365 0 2843 98 5 0 chrX 98659345 98659744 -78314396 - L1PA16 LINE L1 -262 5904 5504 7336 250 70 31 chrX 98659836 98663079 -78311061 + L1ME3A LINE L1 2119 5467 -748 5244 239 48 44 chrX 98663457 98663679 -78310461 + L1MB7 LINE L1 3465 3685 -2461 2371 99 0 3 chrX 98663679 98663992 -78310148 + AluSq SINE Alu 1 312 -1 5244 239 48 44 chrX 98663992 98665413 -78308727 + L1MB7 LINE L1 3685 5117 -1029 1957 97 13 13 chrX 98665413 98665470 -78308670 + L1MA3 LINE L1 6007 6063 -242 1797 164 7 0 chrX 98665470 98665775 -78308365 + AluSx SINE Alu 1 307 -5 1957 97 13 13 chrX 98665775 98666016 -78308124 + L1MA3 LINE L1 6062 6305 0 5244 239 48 44 chrX 98666016 98666151 -78307989 + L1MB7 LINE L1 5117 5250 -896 3851 151 47 1 chrX 98666156 98666863 -78307277 + L1MB7 LINE L1 5445 6183 -1 952 212 55 21 chrX 98667744 98667980 -78306160 + L1ME3A LINE L1 5924 6167 -72 543 243 50 0 chrX 98668145 98668285 -78305855 + MLT1I LTR MaLR 1 147 -262 218 286 0 14 chrX 98668459 98668529 -78305611 - MIR SINE MIR -166 96 28 277 274 89 14 chrX 98668968 98669114 -78305026 - L1ME4a LINE L1 0 6121 5965 1528 201 61 48 chrX 98669119 98669577 -78304563 + MLT1C LTR MaLR 1 464 -3 480 270 20 25 chrX 98669981 98670177 -78303963 + L1MC4a LINE L1 5685 5879 -1929 24 0 0 0 chrX 98670636 98670660 -78303480 + AT_rich Low_complexity Low_complexity 1 24 0 205 294 0 20 chrX 98671209 98671260 -78302880 - L2 LINE L2 -14 3299 3250 226 274 234 8 chrX 98671268 98671392 -78302748 - MIR SINE MIR -108 154 3 626 303 81 38 chrX 98671425 98671835 -78302305 + MLT1J2 LTR MaLR 20 450 0 28 29 0 0 chrX 98673537 98673572 -78300568 + AT_rich Low_complexity Low_complexity 1 35 0 368 275 7 67 chrX 98674128 98674224 -78299916 + MIR3 SINE MIR 65 150 -58 970 217 32 16 chrX 98674224 98674473 -78299667 + MER112 DNA MER1_type 2 254 -2 368 275 7 67 chrX 98674473 98674525 -78299615 + MIR3 SINE MIR 150 204 -4 572 227 53 0 chrX 98674557 98674689 -78299451 - MIR SINE MIR 0 262 124 407 248 55 0 chrX 98675403 98675512 -78298628 - L2 LINE L2 0 3313 3199 181 346 39 0 chrX 98675655 98675707 -78298433 - L2 LINE L2 -70 3202 3149 1284 138 24 5 chrX 98675728 98675938 -78298202 + MER20 DNA MER1_type 6 219 0 756 274 48 39 chrX 98676126 98676436 -78297704 + L2 LINE L2 2819 3131 -182 233 240 27 27 chrX 98676561 98676636 -78297504 + L2 LINE L2 3237 3311 -2 230 229 21 0 chrX 98679137 98679185 -78294955 - MIR SINE MIR -2 260 212 1035 175 21 11 chrX 98679726 98679915 -78294225 - MER90 LTR ERV1 0 575 385 516 271 19 0 chrX 98679923 98680030 -78294110 + MER81 DNA DNA 6 114 0 1343 209 34 43 chrX 98680033 98680453 -78293687 - MER90 LTR ERV1 -194 420 1 226 246 0 0 chrX 98680855 98680912 -78293228 + (TA)n Simple_repeat Simple_repeat 2 58 0 604 268 91 24 chrX 98681582 98681836 -78292304 + L2 LINE L2 2584 2854 -460 783 324 162 7 chrX 98681837 98682374 -78291766 + L2 LINE L2 2358 2977 -337 1195 307 64 26 chrX 98682398 98682983 -78291157 + L2 LINE L2 2538 3159 -154 1751 149 10 14 chrX 98682983 98683278 -78290862 - AluJo SINE Alu -18 294 1 1195 307 64 26 chrX 98683278 98683421 -78290719 + L2 LINE L2 3159 3295 -18 507 281 15 48 chrX 98683609 98683967 -78290173 - L1MC4a LINE L1 -85 6036 5694 500 304 86 47 chrX 98683972 98684311 -78289829 - L1MC4a LINE L1 -1800 4346 3995 201 273 0 0 chrX 98684367 98684422 -78289718 + (TA)n Simple_repeat Simple_repeat 2 56 0 2916 127 18 2 chrX 98685905 98686363 -78287777 - MLT1C LTR MaLR 0 467 3 1946 198 33 31 chrX 98686363 98686788 -78287352 - MLT1C-int LTR MaLR 0 1371 946 28 0 0 0 chrX 98687170 98687198 -78286942 + AT_rich Low_complexity Low_complexity 1 28 0 5752 90 16 11 chrX 98687205 98688063 -78286077 - L1MA1 LINE L1 0 6302 5440 443 146 0 0 chrX 98688072 98688154 -78285986 - L1 LINE L1 -2181 3965 3884 * 14781 179 28 18 chrX 98688141 98691340 -78282800 - L1M1 LINE L1 -743 5403 2209 464 188 31 0 chrX 98691338 98691434 -78282706 + MLT1C-int LTR MaLR 1273 1371 0 * 800 144 0 0 chrX 98691434 98691559 -78282581 + MLT1C LTR MaLR 3 127 -340 453 273 47 33 chrX 98691674 98691824 -78282316 - L2 LINE L2 -195 3077 2926 6500 107 19 41 chrX 98691951 98693103 -78281037 - L1MA2 LINE L1 0 6304 5167 21 0 0 0 chrX 98693153 98693174 -78280966 + AT_rich Low_complexity Low_complexity 1 21 0 251 235 59 0 chrX 98694654 98694705 -78279435 - L2 LINE L2 -18 3254 3201 239 367 39 39 chrX 98695261 98695675 -78278465 + L1MEd LINE L1 420 833 -5286 727 161 46 15 chrX 98695677 98695807 -78278333 - AluJo SINE Alu -178 134 1 543 281 80 69 chrX 98695923 98696647 -78277493 + L1MEd LINE L1 955 1731 -842 642 222 0 0 chrX 98696996 98697113 -78277027 + FLAM_C SINE Alu 1 117 -26 1061 164 12 0 chrX 98697263 98697428 -78276712 + FAM SINE Alu 1 167 -8 432 262 24 40 chrX 98697441 98697689 -78276451 + L1MEd LINE L1 2218 2461 -3668 261 0 0 0 chrX 98697792 98697821 -78276319 + (CA)n Simple_repeat Simple_repeat 1 29 0 1020 133 13 0 chrX 98697948 98698098 -78276042 + AluSg/x SINE Alu 149 300 -12 547 214 35 52 chrX 98698099 98698272 -78275868 + L1MEc LINE L1 1587 1756 -4640 476 245 50 25 chrX 98698647 98698806 -78275334 + L1MEc LINE L1 1914 2076 -4320 432 37 0 0 chrX 98698847 98698901 -78275239 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 6931 53 2 0 chrX 98698901 98699755 -78274385 - L1PA7 LINE L1 -22 6132 5277 3419 82 6 0 chrX 98699755 98700228 -78273912 + L1PA7 LINE L1 4798 5273 -873 228 242 20 20 chrX 98700246 98700345 -78273795 + L1MEc LINE L1 2143 2241 -4155 14007 120 14 36 chrX 98700354 98700685 -78273455 - Tigger1 DNA MER2_type 0 2418 2081 4567 56 0 0 chrX 98700685 98701255 -78272885 - L1PA5 LINE L1 -1 6153 5584 14007 120 14 36 chrX 98701255 98703378 -78270762 - Tigger1 DNA MER2_type -337 2081 2 291 285 112 14 chrX 98703380 98703594 -78270546 + L1MEc LINE L1 2212 2446 -3769 270 274 108 19 chrX 98703859 98704016 -78270124 + L1MC/D LINE L1 5678 5848 -1960 1562 164 56 4 chrX 98704307 98704465 -78269675 - AluJo SINE Alu -16 296 117 233 57 29 0 chrX 98704465 98704500 -78269640 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1562 164 56 4 chrX 98704500 98704610 -78269530 - AluJo SINE Alu -195 117 14 28 29 0 0 chrX 98704813 98704848 -78269292 + AT_rich Low_complexity Low_complexity 1 35 0 353 190 0 0 chrX 98706078 98706136 -78268004 + L2 LINE L2 3214 3271 -1 1628 135 109 29 chrX 98706156 98706503 -78267637 - THE1C LTR MaLR 0 375 1 795 167 8 0 chrX 98706680 98706869 -78267271 - FLAM_C SINE Alu 0 190 1 180 111 0 0 chrX 98708055 98708082 -78266058 + (A)n Simple_repeat Simple_repeat 1 27 0 280 53 0 0 chrX 98708507 98708545 -78265595 + tRNA-Ile-ATT tRNA tRNA 1 38 -39 1621 106 25 22 chrX 98708847 98709121 -78265019 + L1MA2 LINE L1 6030 6304 0 1473 180 47 65 chrX 98710699 98711038 -78263102 - MER58B DNA MER1_type -8 333 1 785 226 285 10 chrX 98712418 98712723 -78261417 - L2 LINE L2 0 3313 2925 1852 134 0 27 chrX 98712759 98713079 -78261061 - AluJb SINE Alu 0 312 1 26 30 0 0 chrX 98713317 98713350 -78260790 + AT_rich Low_complexity Low_complexity 1 33 0 238 261 65 54 chrX 98713732 98713824 -78260316 - L2 LINE L2 -798 2516 2424 202 316 53 59 chrX 98713881 98714033 -78260107 + L2 LINE L2 2916 3066 -206 620 297 41 50 chrX 98716879 98717219 -78256921 - L1ME LINE L1 -316 5805 5469 610 241 14 63 chrX 98717350 98717557 -78256583 - L1ME3 LINE L1 -2 6160 5964 419 273 189 42 chrX 98717565 98717683 -78256457 + L2 LINE L2 2696 2795 -518 980 240 23 9 chrX 98717683 98717904 -78256236 - MER58A DNA MER1_type 0 224 1 419 273 189 42 chrX 98717904 98718320 -78255820 + L2 LINE L2 2795 3313 0 330 266 91 41 chrX 98718827 98719191 -78254949 - L1M4 LINE L1 -2884 3498 3117 2113 95 20 16 chrX 98719546 98719851 -78254289 - AluSx SINE Alu -6 306 1 392 309 116 25 chrX 98719934 98720219 -78253921 - L1M4 LINE L1 -3524 2858 2548 742 204 15 0 chrX 98720878 98721015 -78253125 - MER5A DNA MER1_type -50 139 1 1205 158 30 113 chrX 98721018 98721346 -78252794 + AluJb SINE Alu 1 301 -11 375 305 95 16 chrX 98721356 98721606 -78252534 - L1M4 LINE L1 -3846 2536 2268 294 102 0 51 chrX 98721677 98721736 -78252404 - L1MA1 LINE L1 -7 6295 6240 316 308 105 41 chrX 98721828 98722483 -78251657 - L1M4 LINE L1 -2344 3802 3106 2142 182 57 30 chrX 98722491 98722921 -78251219 + Charlie1b DNA MER1_type 5 453 -2308 2210 108 0 3 chrX 98722921 98723217 -78250923 + AluSx SINE Alu 5 299 -13 2142 182 57 30 chrX 98723217 98723291 -78250849 + Charlie1b DNA MER1_type 453 523 0 644 269 150 4 chrX 98724149 98724383 -78249757 - L2 LINE L2 -148 3165 2898 1455 175 16 57 chrX 98724452 98724766 -78249374 - AluJo SINE Alu -11 301 1 290 308 113 33 chrX 98725553 98725793 -78248347 + L2 LINE L2 1606 1864 -1450 403 219 206 27 chrX 98725985 98726131 -78248009 - L1ME4a LINE L1 -11 6110 5939 216 185 12 25 chrX 98726141 98726222 -78247918 + (TA)n Simple_repeat Simple_repeat 2 81 0 246 317 76 49 chrX 98726500 98726724 -78247416 + L2 LINE L2 2804 3033 -239 799 302 40 8 chrX 98726907 98727159 -78246981 + MIR SINE MIR 3 262 0 310 272 74 0 chrX 98727170 98727251 -78246889 + L2 LINE L2 3186 3272 0 25 0 0 0 chrX 98727486 98727511 -78246629 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chrX 98727984 98728016 -78246124 + AT_rich Low_complexity Low_complexity 1 32 0 1298 156 14 116 chrX 98728166 98728309 -78245831 - L1MC4 LINE L1 -6 8036 7880 186 43 0 0 chrX 98728309 98728332 -78245808 + (CA)n Simple_repeat Simple_repeat 2 24 0 1298 156 14 116 chrX 98728332 98728559 -78245581 - L1MC4 LINE L1 -162 7880 7704 698 198 52 41 chrX 98729584 98729756 -78244384 - MER5B DNA MER1_type -1 177 4 1807 131 48 39 chrX 98729823 98730181 -78243959 - L1MA7 LINE L1 -1 6290 5930 670 142 25 0 chrX 98730182 98730302 -78243838 + L1MA6 LINE L1 5858 5980 -320 2143 124 0 0 chrX 98730302 98730622 -78243518 - AluSx SINE Alu 0 312 1 1960 128 31 0 chrX 98731131 98731421 -78242719 - AluSx SINE Alu -13 299 1 216 234 0 0 chrX 98731704 98731751 -78242389 - MIR3 SINE MIR -8 200 154 238 371 86 29 chrX 98731805 98731945 -78242195 - MIR3 SINE MIR -45 163 16 1394 284 72 60 chrX 98731970 98732527 -78241613 + L1ME3A LINE L1 3428 3977 -2169 1789 163 0 7 chrX 98732527 98732804 -78241336 + AluJb SINE Alu 1 275 -37 183 114 0 0 chrX 98732814 98732849 -78241291 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 1394 284 72 60 chrX 98732849 98733123 -78241017 + L1ME3A LINE L1 3985 4288 -1858 1927 99 27 10 chrX 98733123 98733416 -78240724 + L1PA13 LINE L1 5866 6163 0 1394 284 72 60 chrX 98733416 98733645 -78240495 + L1ME3A LINE L1 4288 4513 -1633 416 263 74 40 chrX 98733615 98733907 -78240233 + L1ME3A LINE L1 5177 5476 -686 * 1489 157 60 40 chrX 98733921 98734366 -78239774 + AluJo SINE Alu 7 457 0 1276 270 28 37 chrX 98734372 98734832 -78239308 + L1ME3A LINE L1 5485 5940 -230 23 0 0 0 chrX 98735380 98735403 -78238737 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 98735749 98735771 -78238369 + AT_rich Low_complexity Low_complexity 1 22 0 194 214 0 14 chrX 98736581 98736641 -78237499 + (TA)n Simple_repeat Simple_repeat 2 62 -8 2032 117 11 3 chrX 98736641 98736924 -78237216 - AluSx SINE Alu -27 285 1 194 214 0 14 chrX 98736924 98736933 -78237207 + (TA)n Simple_repeat Simple_repeat 62 70 0 400 316 101 0 chrX 98737673 98737841 -78236299 - MIR SINE MIR -16 246 62 314 115 0 0 chrX 98737905 98737957 -78236183 - L1MB1 LINE L1 -1 6167 6116 607 240 149 7 chrX 98738809 98738963 -78235177 + MER5A DNA MER1_type 14 189 0 1186 165 12 49 chrX 98740699 98740756 -78233384 + MER46A DNA MER2_type 2 60 -2671 2681 7 0 0 chrX 98740756 98741053 -78233087 - AluYa5 SINE Alu -14 297 1 1186 165 12 49 chrX 98741053 98741238 -78232902 + MER46A DNA MER2_type 60 235 -1 3980 145 11 5 chrX 98742288 98743263 -78230877 - L1PA16 LINE L1 -308 5858 4878 6126 165 30 6 chrX 98744068 98745268 -78228872 - L1MC1 LINE L1 -1 6332 5103 920 224 24 14 chrX 98745289 98745499 -78228641 - L1MC1 LINE L1 0 6333 6122 4404 234 34 15 chrX 98745501 98745646 -78228494 - L1MC1 LINE L1 -1046 5100 4959 216 0 0 0 chrX 98745646 98745670 -78228470 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 4404 234 34 15 chrX 98745670 98746691 -78227449 - L1MC1 LINE L1 -1187 4959 3911 43215 47 1 1 chrX 98746700 98752851 -78221289 + L1PA4 LINE L1 1 6153 -2 1736 261 16 4 chrX 98752853 98753398 -78220742 - L1MC1 LINE L1 -2223 3923 3372 618 253 5 5 chrX 98753395 98753597 -78220543 - L1MC1 LINE L1 -3727 2419 2218 * 2563 101 15 18 chrX 98753626 98754021 -78220119 - L1PA13 LINE L1 -1 6162 5769 12558 174 14 20 chrX 98754026 98755344 -78218796 - L1P LINE L1 -1257 4889 3594 1692 45 0 58 chrX 98755344 98755586 -78218554 - L1PA4 LINE L1 0 6155 5928 12558 174 14 20 chrX 98755586 98756924 -78217216 - L1P LINE L1 -2552 3594 2249 843 239 71 57 chrX 98757189 98757595 -78216545 - L1MC4a LINE L1 -1720 6088 5677 603 124 9 19 chrX 98757610 98757715 -78216425 - L1PB4 LINE L1 -272 5884 5781 285 310 92 38 chrX 98757720 98757959 -78216181 - L1MC4a LINE L1 -563 5607 5352 301 283 109 65 chrX 98757982 98758258 -78215882 - L1MC4a LINE L1 -837 5309 5022 1402 141 12 0 chrX 98758276 98758518 -78215622 - L1MB4 LINE L1 -1 6179 5935 8546 169 36 42 chrX 98758545 98758631 -78215509 - L1M1 LINE L1 -5708 1857 1772 198 0 0 0 chrX 98758631 98758653 -78215487 + (TC)n Simple_repeat Simple_repeat 2 23 0 8546 169 36 42 chrX 98758653 98760418 -78213722 - L1M1 LINE L1 -5793 1772 16 1795 164 5 48 chrX 98760428 98760806 -78213334 - L1MB4 LINE L1 -511 5669 5308 2515 55 0 0 chrX 98760897 98761190 -78212950 + AluSc SINE Alu 1 293 -16 395 304 160 22 chrX 98761467 98761835 -78212305 - MLT1J2 LTR MaLR -31 419 1 571 220 200 13 chrX 98762017 98762167 -78211973 - MIR SINE MIR -8 254 77 532 187 167 20 chrX 98762441 98762591 -78211549 + MER69A DNA AcHobo 1 172 -5 207 313 183 9 chrX 98762628 98762743 -78211397 + MIR SINE MIR 7 141 -121 1593 278 63 52 chrX 98762746 98763636 -78210504 - L1M4 LINE L1 -5626 916 17 868 166 0 7 chrX 98766027 98766166 -78207974 + FLAM_C SINE Alu 1 138 -5 393 253 18 77 chrX 98766279 98766449 -78207691 - L2 LINE L2 -24 3289 3130 448 352 95 37 chrX 98766516 98766789 -78207351 - L2 LINE L2 -369 2945 2657 1408 223 52 45 chrX 98766791 98767257 -78206883 + MLT1J LTR MaLR 3 471 -40 183 147 0 0 chrX 98767294 98767328 -78206812 - L2 LINE L2 -654 2660 2627 619 231 135 0 chrX 98767516 98767672 -78206468 - MER5B DNA MER1_type -1 177 1 338 336 34 20 chrX 98767849 98767995 -78206145 - MIR3 SINE MIR -3 205 58 630 275 45 11 chrX 98768186 98768364 -78205776 - MER5A DNA MER1_type -5 184 1 21839 165 19 7 chrX 98768604 98776211 -78197929 + L1MA3 LINE L1 16 7719 -5 36 23 0 0 chrX 98776328 98776371 -78197769 + AT_rich Low_complexity Low_complexity 1 43 0 836 115 0 0 chrX 98776372 98776485 -78197655 - FLAM_C SINE Alu -26 117 5 1770 148 25 0 chrX 98777093 98777397 -78196743 - AluJb SINE Alu 0 311 1 1995 106 16 3 chrX 98777405 98777726 -78196414 - L1MA4 LINE L1 -5 6295 5971 337 286 158 24 chrX 98777803 98778100 -78196040 + L1ME4a LINE L1 5580 5916 -205 21 0 0 0 chrX 98778160 98778181 -78195959 + AT_rich Low_complexity Low_complexity 1 21 0 264 176 59 0 chrX 98779385 98779436 -78194704 - L2 LINE L2 -2 3270 3217 351 0 0 0 chrX 98779530 98779569 -78194571 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chrX 98779568 98779595 -78194545 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 31 0 0 0 chrX 98780721 98780752 -78193388 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chrX 98780881 98780910 -78193230 + AT_rich Low_complexity Low_complexity 1 29 0 12153 199 14 27 chrX 98781940 98784704 -78189436 - L1PA13 LINE L1 -4040 2757 1 339 154 0 0 chrX 98785034 98785099 -78189041 + (CTA)n Simple_repeat Simple_repeat 1 65 0 547 342 122 22 chrX 98786032 98786541 -78187599 - L2 LINE L2 -625 2689 2130 1015 228 66 82 chrX 98788493 98788870 -78185270 - MLT1A2 LTR MaLR 0 374 4 2526 243 47 11 chrX 98788877 98789678 -78184462 - L1 LINE L1 -971 5175 4346 212 350 41 21 chrX 98790150 98790247 -78183893 - MIR3 SINE MIR -49 159 61 597 325 5 5 chrX 98790267 98790470 -78183670 + MIR SINE MIR 57 259 -3 274 250 88 0 chrX 98790508 98790588 -78183552 - Charlie4 DNA MER1_type -1855 106 20 961 296 94 24 chrX 98790823 98791238 -78182902 - LTR16A LTR ERVL 0 450 7 316 303 148 30 chrX 98791373 98791766 -78182374 + L1M4 LINE L1 4957 5395 -751 207 0 0 0 chrX 98791826 98791849 -78182291 + (T)n Simple_repeat Simple_repeat 1 23 0 1826 256 26 31 chrX 98791867 98792444 -78181696 - L1ME3A LINE L1 -1 6169 5596 1860 164 0 20 chrX 98793374 98793678 -78180462 - AluJb SINE Alu -14 298 1 225 222 12 74 chrX 98793719 98793800 -78180340 + L2 LINE L2 3014 3089 -183 460 221 21 11 chrX 98793952 98794047 -78180093 + MER5B DNA MER1_type 83 178 0 6753 137 18 5 chrX 98794578 98796755 -78177385 - L1MA2 LINE L1 0 7723 5518 2082 143 4 18 chrX 98796755 98796875 -78177265 - L1MA2 LINE L1 -3707 3858 3738 2149 128 3 0 chrX 98796875 98797172 -78176968 - AluSp SINE Alu -15 298 1 2082 143 4 18 chrX 98797172 98797608 -78176532 - L1MA2 LINE L1 -3827 3738 3315 8390 73 14 21 chrX 98797608 98797930 -78176210 - HERV17 LTR ERV1 -7453 1173 850 2575 57 0 13 chrX 98797930 98798245 -78175895 - AluY SINE Alu 0 311 1 8390 73 14 21 chrX 98798245 98799102 -78175038 - HERV17 LTR ERV1 -7776 850 2 3478 69 67 4 chrX 98799102 98799595 -78174545 - LTR17 LTR ERV1 0 780 257 7073 108 16 25 chrX 98799598 98800854 -78173286 - L1MA2 LINE L1 -4237 3328 2084 1967 216 100 20 chrX 98800855 98801553 -78172587 + L1MC/D LINE L1 911 1664 -4762 4239 201 36 14 chrX 98801555 98802845 -78171295 + L1MA9 LINE L1 4834 6143 -169 189 0 0 0 chrX 98802845 98802866 -78171274 + (CA)n Simple_repeat Simple_repeat 1 21 0 4239 201 36 14 chrX 98802866 98803040 -78171100 + L1MA9 LINE L1 6143 6312 0 2848 209 47 19 chrX 98803076 98804529 -78169611 + L1MC/D LINE L1 4593 6094 -428 475 192 20 0 chrX 98804529 98804628 -78169512 + L1MD2 LINE L1 6259 6359 0 207 281 0 16 chrX 98804709 98804773 -78169367 + MIR SINE MIR 34 96 -166 444 257 73 26 chrX 98804775 98804967 -78169173 - L1ME LINE L1 -589 5532 5332 * 1585 262 99 12 chrX 98804960 98805708 -78168432 - L1ME LINE L1 -2421 3725 2913 496 223 97 6 chrX 98805736 98805911 -78168229 - L1ME LINE L1 -688 5474 5284 1570 94 0 19 chrX 98805917 98806171 -78167969 - AluSg/x SINE Alu 0 321 72 732 75 132 0 chrX 98806171 98806277 -78167863 - AluSq/x SINE Alu -192 120 1 2688 229 55 27 chrX 98806278 98806989 -78167151 - L1ME LINE L1 -866 5280 4538 1778 139 24 35 chrX 98806989 98807325 -78166815 + AluJb SINE Alu 1 333 0 2688 229 55 27 chrX 98807325 98807491 -78166649 - L1ME LINE L1 -1608 4538 4378 626 172 0 8 chrX 98807508 98807642 -78166498 + (TA)n Simple_repeat Simple_repeat 1 133 0 2181 117 0 0 chrX 98807668 98807970 -78166170 - AluSx SINE Alu 0 304 3 2570 256 90 59 chrX 98807999 98809451 -78164689 - L1ME LINE L1 -1785 4361 2850 351 0 0 0 chrX 98809451 98809490 -78164650 + (CA)n Simple_repeat Simple_repeat 2 40 0 2570 256 90 59 chrX 98809490 98809704 -78164436 - L1ME LINE L1 -3296 2850 2644 896 322 39 37 chrX 98809974 98810459 -78163681 + ERVL LTR ERVL 4956 5441 -323 816 191 0 0 chrX 98810481 98810659 -78163481 + (TA)n Simple_repeat Simple_repeat 2 179 0 273 29 0 0 chrX 98811013 98811047 -78163093 + (TG)n Simple_repeat Simple_repeat 1 34 0 1087 259 29 3 chrX 98811878 98812221 -78161919 + L1MC/D LINE L1 3394 3745 -2401 952 216 0 19 chrX 98813580 98813788 -78160352 - AluJo SINE Alu -22 290 87 22 0 0 0 chrX 98814104 98814126 -78160014 + AT_rich Low_complexity Low_complexity 1 22 0 425 281 116 0 chrX 98814182 98814328 -78159812 + LTR50 LTR ERVL 22 184 -611 457 279 119 0 chrX 98814334 98814535 -78159605 - L1M4 LINE L1 -2316 4034 3810 2308 288 75 18 chrX 98814573 98814613 -78159527 + L1MEc LINE L1 45 81 -6315 1995 206 63 33 chrX 98814613 98815103 -78159037 - MLT1D LTR MaLR 0 505 1 2308 288 75 18 chrX 98815103 98816046 -78158094 + L1MEc LINE L1 81 1084 -5312 * 2858 192 32 11 chrX 98816041 98817096 -78157044 + L1MC/D LINE L1 4597 5672 -672 1539 304 53 4 chrX 98817166 98817692 -78156448 - L1M4 LINE L1 -4863 1418 867 809 261 96 14 chrX 98818365 98818583 -78155557 - MIR SINE MIR -24 238 3 332 324 129 61 chrX 98818727 98819191 -78154949 - L2 LINE L2 -2309 1005 469 2451 50 13 3 chrX 98819191 98819492 -78154648 + AluY SINE Alu 1 304 -7 332 324 129 61 chrX 98819492 98819781 -78154359 - L2 LINE L2 -2845 469 201 207 227 0 0 chrX 98821452 98821496 -78152644 - L2 LINE L2 0 3313 3270 586 219 6 107 chrX 98821575 98821753 -78152387 + MIR SINE MIR 12 171 -91 288 219 35 88 chrX 98821768 98821882 -78152258 + MIR SINE MIR 131 238 -24 820 325 0 4 chrX 98822212 98822461 -78151679 - L3 LINE CR1 -54 1523 1276 35 0 0 0 chrX 98822555 98822590 -78151550 + AT_rich Low_complexity Low_complexity 1 35 0 253 195 299 0 chrX 98822974 98823051 -78151089 + L2 LINE L2 3173 3272 0 2266 98 3 0 chrX 98824587 98824883 -78149257 - AluSp SINE Alu -16 297 1 2114 98 40 0 chrX 98825513 98825809 -78148331 + AluSq SINE Alu 1 308 -5 339 85 0 51 chrX 98826735 98826794 -78147346 - L1PA8 LINE L1 -3 6169 6114 1401 125 0 9 chrX 98827920 98828136 -78146004 - AluSg/x SINE Alu -15 297 84 2493 59 0 3 chrX 98828371 98828677 -78145463 + AluY SINE Alu 2 306 -5 238 354 132 16 chrX 98828701 98828944 -78145196 - L2 LINE L2 -584 2730 2460 2062 123 14 3 chrX 98830678 98830970 -78143170 - AluSx SINE Alu -17 295 1 187 291 177 0 chrX 98831178 98831257 -78142883 - MIR SINE MIR -105 157 65 1007 114 0 0 chrX 98831831 98831963 -78142177 - FLAM_C SINE Alu -11 132 1 761 211 107 41 chrX 98832104 98832346 -78141794 + MIR SINE MIR 3 260 -2 543 218 228 21 chrX 98833226 98833419 -78140721 + MIR SINE MIR 30 262 0 371 191 22 34 chrX 98833676 98833765 -78140375 + L3 LINE CR1 1409 1496 -81 463 225 179 7 chrX 98833773 98833924 -78140216 - MER5A DNA MER1_type -1 188 12 384 250 77 0 chrX 98834591 98834695 -78139445 - L1MC4 LINE L1 -29 8013 7902 2338 64 7 0 chrX 98834736 98835016 -78139124 + AluSq SINE Alu 1 282 -31 198 103 0 0 chrX 98835019 98835048 -78139092 + (TA)n Simple_repeat Simple_repeat 2 30 0 338 320 184 34 chrX 98835063 98835450 -78138690 + L2 LINE L2 2807 3251 -21 955 280 102 54 chrX 98835450 98836218 -78137922 + L2 LINE L2 2279 3108 -164 192 195 0 24 chrX 98836697 98836738 -78137402 + L3b LINE CR1 1539 1578 -5 754 201 78 55 chrX 98837082 98837301 -78136839 - MIR SINE MIR -24 238 15 735 288 36 16 chrX 98839724 98839974 -78134166 + MIR SINE MIR 2 256 -6 426 273 23 114 chrX 98840093 98840313 -78133827 + MIR3 SINE MIR 2 201 -7 180 250 23 0 chrX 98840605 98840649 -78133491 - MIR SINE MIR 0 262 218 427 314 108 11 chrX 98840682 98840867 -78133273 + MIR SINE MIR 2 204 -58 769 240 23 0 chrX 98842393 98842564 -78131576 + MIR SINE MIR 64 238 -24 283 296 51 20 chrX 98843967 98844065 -78130075 - L2 LINE L2 -4 3268 3168 1884 174 30 3 chrX 98844387 98844720 -78129420 - MER2 DNA MER2_type -1 343 2 256 164 211 10 chrX 98844880 98844984 -78129156 - L1ME4a LINE L1 -4 6117 5993 22 0 0 0 chrX 98845041 98845063 -78129077 + AT_rich Low_complexity Low_complexity 1 22 0 2115 141 0 0 chrX 98845134 98845446 -78128694 - AluSx SINE Alu 0 312 1 548 223 40 14 chrX 98846054 98846202 -78127938 - L1ME3A LINE L1 -9 6161 6010 357 194 116 23 chrX 98846894 98847023 -78127117 + L1ME4a LINE L1 5978 6118 -3 738 20 0 59 chrX 98848664 98848765 -78125375 - L1PA3 LINE L1 0 6155 6061 2139 138 30 3 chrX 98848779 98849113 -78125027 + MER2 DNA MER2_type 1 343 -1 508 273 87 7 chrX 98849569 98849719 -78124421 + MIR SINE MIR 1 162 -100 1581 165 34 9 chrX 98849975 98850297 -78123843 - L1ME3A LINE L1 -342 5842 5513 22 0 0 0 chrX 98850303 98850325 -78123815 + AT_rich Low_complexity Low_complexity 1 22 0 541 186 0 10 chrX 98850345 98850442 -78123698 - L1ME3A LINE L1 -643 5535 5440 * 5814 204 29 43 chrX 98850437 98852019 -78122121 - L1ME3A LINE L1 -1268 4878 3319 302 57 0 19 chrX 98852206 98852259 -78121881 - L1ME3A LINE L1 -2921 3225 3174 2198 34 19 0 chrX 98852267 98852532 -78121608 - L1PA3 LINE L1 0 6155 5886 2738 201 44 92 chrX 98852547 98853059 -78121081 - L1M4 LINE L1 -5809 733 267 2274 96 0 26 chrX 98853059 98853371 -78120769 - AluSx SINE Alu -8 304 1 2738 201 44 92 chrX 98853371 98853623 -78120517 - L1M4 LINE L1 -6275 267 5 1302 275 115 22 chrX 98853755 98854483 -78119657 + L1ME4a LINE L1 5318 6113 -8 204 268 158 24 chrX 98854666 98854793 -78119347 - L2 LINE L2 -903 2411 2268 2238 39 29 29 chrX 98855732 98856040 -78118100 - AluY SINE Alu 0 308 1 198 0 0 0 chrX 98856184 98856206 -78117934 + (T)n Simple_repeat Simple_repeat 1 22 0 273 299 58 52 chrX 98856650 98856804 -78117336 + L2 LINE L2 3159 3313 0 486 280 64 6 chrX 98857282 98857439 -78116701 - MIR3 SINE MIR -7 201 36 1459 89 0 0 chrX 98858073 98858253 -78115887 + AluSq SINE Alu 3 182 -131 986 113 14 0 chrX 98858360 98858501 -78115639 + AluSg/x SINE Alu 144 286 -24 739 208 124 0 chrX 98858542 98858720 -78115420 + MER3 DNA MER1_type 5 204 -5 241 143 102 0 chrX 98858682 98858731 -78115409 - MER3 DNA MER1_type -119 90 37 * 2364 56 7 16 chrX 98858883 98859186 -78114954 + AluY SINE Alu 1 300 -11 5012 175 50 19 chrX 98859376 98860366 -78113774 - L1MD2 LINE L1 -12 6347 5328 204 331 108 7 chrX 98860966 98861105 -78113035 + L2 LINE L2 2825 2977 -336 1502 169 60 25 chrX 98861281 98861600 -78112540 + L1ME1 LINE L1 5834 6163 -3 2324 155 4 57 chrX 98863137 98863334 -78110806 + Tigger2a DNA MER2_type 1 207 -2501 1797 133 8 0 chrX 98863334 98863598 -78110542 + AluJb SINE Alu 16 281 -31 2324 155 4 57 chrX 98863598 98863858 -78110282 + Tigger2a DNA MER2_type 207 434 0 960 130 242 0 chrX 98864845 98864980 -78109160 - L1MA9 LINE L1 0 6312 6211 378 0 0 0 chrX 98864980 98865022 -78109118 + (TG)n Simple_repeat Simple_repeat 2 43 0 960 130 242 0 chrX 98865022 98865101 -78109039 - L1MA9 LINE L1 -101 6211 6046 568 168 62 0 chrX 98865098 98865218 -78108922 + L1MA9 LINE L1 5932 6063 -126 * 727 245 89 42 chrX 98866381 98866618 -78107522 + MIR SINE MIR 2 249 -13 476 320 34 17 chrX 98868145 98868323 -78105817 + MIR SINE MIR 26 206 -56 233 315 8 62 chrX 98868448 98868578 -78105562 + MIR3 SINE MIR 77 199 -9 254 305 0 17 chrX 98869025 98869084 -78105056 - L2 LINE L2 -5 3267 3210 2118 142 103 3 chrX 98869281 98869668 -78104472 - MSTB LTR MaLR 0 426 1 381 315 115 0 chrX 98870175 98870305 -78103835 - MIR SINE MIR -98 164 20 674 302 42 5 chrX 98870959 98871171 -78102969 + MIR SINE MIR 7 226 -36 274 209 67 76 chrX 98871222 98871327 -78102813 - MER103 DNA DNA -51 115 12 183 42 0 0 chrX 98871409 98871433 -78102707 + (TTCTC)n Simple_repeat Simple_repeat 1 24 0 339 85 0 0 chrX 98871433 98871480 -78102660 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 2140 114 3 0 chrX 98871484 98871774 -78102366 - AluSx SINE Alu -21 291 1 203 0 37 0 chrX 98872528 98872555 -78101585 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1037 180 0 0 chrX 98872884 98873051 -78101089 - FRAM SINE Alu -11 165 1 21 0 0 0 chrX 98873428 98873449 -78100691 + AT_rich Low_complexity Low_complexity 1 21 0 409 347 124 21 chrX 98874059 98874451 -78099689 - L2 LINE L2 -7 3265 2589 670 221 50 22 chrX 98874677 98874858 -78099282 + MER5A DNA MER1_type 1 186 -3 5932 166 31 100 chrX 98874869 98876042 -78098098 + Charlie1a DNA MER1_type 1 1254 -1507 4590 23 6 0 chrX 98876042 98876573 -78097567 + L1PA5 LINE L1 5616 6149 -5 5932 166 31 100 chrX 98876573 98876806 -78097334 + Charlie1a DNA MER1_type 1254 1290 -1471 1946 104 56 0 chrX 98876806 98877074 -78097066 - AluY SINE Alu -28 283 1 5932 166 31 100 chrX 98877074 98877230 -78096910 + Charlie1a DNA MER1_type 1290 1455 0 317 152 61 0 chrX 98877765 98877831 -78096309 - MSTB1 LTR MaLR 0 432 363 28 61 0 0 chrX 98878653 98878702 -78095438 + AT_rich Low_complexity Low_complexity 1 49 0 255 235 0 0 chrX 98878740 98878791 -78095349 + L2 LINE L2 3259 3309 -4 315 276 41 20 chrX 98880221 98880319 -78093821 + L2 LINE L2 3168 3267 -5 2874 130 113 0 chrX 98880803 98881333 -78092807 + L1MA4 LINE L1 5700 6289 -11 1910 160 7 3 chrX 98881939 98882239 -78091901 + AluJb SINE Alu 1 301 -11 521 98 24 0 chrX 98882321 98882403 -78091737 - HY1 scRNA scRNA -1 111 28 508 189 220 15 chrX 98882455 98882587 -78091553 - MER63 DNA MER1_type -273 789 5 627 225 154 6 chrX 98882656 98882825 -78091315 + MIR SINE MIR 3 196 -66 8653 188 69 22 chrX 98883333 98885472 -78088668 + L1M1 LINE L1 22 2582 -4983 420 95 16 0 chrX 98885468 98885531 -78088609 + L1M1 LINE L1 3091 3154 -4411 * 26984 77 10 13 chrX 98885634 98889343 -78084797 - L1P LINE L1 -2447 3699 2 193 114 29 0 chrX 98890235 98890270 -78083870 + L2 LINE L2 3275 3310 -3 320 206 29 125 chrX 98890913 98891049 -78083091 - L1ME4a LINE L1 -1 6120 5998 2411 245 95 18 chrX 98891283 98892001 -78082139 + L2 LINE L2 953 1725 -1589 760 253 12 0 chrX 98892001 98892167 -78081973 + L2 LINE L2 2441 2608 -706 2116 168 96 26 chrX 98894149 98894618 -78079522 + MLT1D LTR MaLR 4 505 0 3907 193 33 36 chrX 98894763 98896479 -78077661 + L1ME1 LINE L1 4458 6158 -8 619 12 88 35 chrX 98897140 98897310 -78076830 + (TA)n Simple_repeat Simple_repeat 2 180 0 215 125 12 38 chrX 98897311 98897391 -78076749 + (TTA)n Simple_repeat Simple_repeat 3 80 0 41 21 0 0 chrX 98897391 98897439 -78076701 + AT_rich Low_complexity Low_complexity 1 48 0 277 61 84 46 chrX 98897552 98897683 -78076457 + (TA)n Simple_repeat Simple_repeat 1 136 0 31 0 0 0 chrX 98898721 98898752 -78075388 + AT_rich Low_complexity Low_complexity 1 31 0 191 336 0 50 chrX 98898865 98898984 -78075156 - L2 LINE L2 -17 3296 3184 279 232 207 0 chrX 98900906 98900988 -78073152 + L2 LINE L2 3211 3309 -4 933 200 50 0 chrX 98901151 98901331 -78072809 - MER5A DNA MER1_type 0 189 1 398 250 42 42 chrX 98901347 98901467 -78072673 - MER5B DNA MER1_type -9 169 50 4322 180 78 71 chrX 98901469 98902432 -78071708 - L1MC4a LINE L1 -1 7807 6873 431 263 32 19 chrX 98902432 98902588 -78071552 - MER58C DNA MER1_type -2 213 56 4322 180 78 71 chrX 98902588 98903283 -78070857 - L1MC4a LINE L1 -935 6873 6184 21 36 0 0 chrX 98905039 98905067 -78069073 + AT_rich Low_complexity Low_complexity 1 28 0 2412 169 26 9 chrX 98905104 98905523 -78068617 - MSTB LTR MaLR 0 426 1 2227 214 32 6 chrX 98906090 98906614 -78067526 - L1MA10 LINE L1 -2 6332 5628 24 77 0 0 chrX 98907043 98907095 -78067045 + AT_rich Low_complexity Low_complexity 1 52 0 1684 153 7 28 chrX 98907433 98907721 -78066419 - AluJb SINE Alu -30 282 1 430 323 146 0 chrX 98907873 98908031 -78066109 - MER5A DNA MER1_type 0 189 9 288 0 0 0 chrX 98908490 98908522 -78065618 + (TG)n Simple_repeat Simple_repeat 2 33 0 202 289 54 84 chrX 98908528 98908694 -78065446 - L2 LINE L2 -831 2483 2323 534 281 93 27 chrX 98908706 98908907 -78065233 + MIR SINE MIR 14 223 -39 365 299 185 0 chrX 98910243 98910400 -78063740 + MIR SINE MIR 74 259 -3 203 324 65 28 chrX 98911991 98912099 -78062041 + MIR3 SINE MIR 3 114 -94 1898 130 49 0 chrX 98912703 98912987 -78061153 + AluJb SINE Alu 1 298 -14 1537 158 25 54 chrX 98913155 98913472 -78060668 - AluJo SINE Alu -4 308 1 216 67 0 0 chrX 98915293 98915323 -78058817 + (CA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chrX 98915823 98915850 -78058290 + AT_rich Low_complexity Low_complexity 1 27 0 2033 134 0 0 chrX 98915853 98916168 -78057972 + AluSx SINE Alu 1 315 0 356 148 0 62 chrX 98916317 98916398 -78057742 + MIR SINE MIR 119 194 -68 733 142 0 0 chrX 98916963 98917069 -78057071 + FLAM_A SINE Alu 1 106 -36 963 283 71 3 chrX 98917244 98917566 -78056574 - L2 LINE L2 -5 3308 2965 305 238 0 38 chrX 98917552 98917632 -78056508 - L2 LINE L2 -1503 1811 1735 * 288 299 0 94 chrX 98917627 98917684 -78056456 - L2 LINE L2 -41 3272 3232 * 2363 100 0 0 chrX 98917684 98917995 -78056145 + AluSq SINE Alu 1 311 -2 288 299 0 94 chrX 98917995 98918064 -78056076 - L2 LINE L2 -81 3232 3158 192 152 0 0 chrX 98919075 98919108 -78055032 + A-rich Low_complexity Low_complexity 1 33 0 1706 175 0 13 chrX 98919325 98919628 -78054512 + AluJb SINE Alu 1 299 -13 331 299 68 0 chrX 98920749 98920866 -78053274 + L3 LINE CR1 613 737 -840 183 267 0 0 chrX 98920870 98920915 -78053225 + MER5B DNA MER1_type 6 50 -128 1986 117 3 31 chrX 98920917 98921239 -78052901 - AluSx SINE Alu 0 314 1 370 179 15 0 chrX 98921268 98921335 -78052805 + L1MC5 LINE L1 7723 7790 -171 4059 48 0 0 chrX 98921939 98922439 -78051701 - L1PA3 LINE L1 -1 6154 5655 8211 22 0 0 chrX 98922439 98923867 -78050273 - L1PA4 LINE L1 -313 5842 4415 4582 29 7 0 chrX 98923873 98924420 -78049720 + L1PA4 LINE L1 3871 4421 -1725 2096 120 62 3 chrX 98925444 98925785 -78048355 + MER46B DNA MER2_type 1 236 0 862 236 85 32 chrX 98926210 98926456 -78047684 - MIR SINE MIR 0 262 4 22 0 0 0 chrX 98927610 98927632 -78046508 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 98927866 98927890 -78046250 + AT_rich Low_complexity Low_complexity 1 24 0 1207 184 84 48 chrX 98929650 98929982 -78044158 + MER2 DNA MER2_type 1 344 0 27 22 0 22 chrX 98930784 98930815 -78043325 + AT_rich Low_complexity Low_complexity 1 32 -12 1788 164 0 43 chrX 98930815 98931114 -78043026 + AluJb SINE Alu 5 290 -22 27 22 0 22 chrX 98931114 98931127 -78043013 + AT_rich Low_complexity Low_complexity 32 44 0 290 216 235 20 chrX 98932025 98932127 -78042013 + MIR SINE MIR 89 212 -50 2382 21 7 3 chrX 98934521 98934805 -78039335 - L1PA4 LINE L1 -3 6152 5868 21 36 0 0 chrX 98934861 98934889 -78039251 + AT_rich Low_complexity Low_complexity 1 28 0 19353 30 2 0 chrX 98935923 98938283 -78035857 + L1P LINE L1 3026 5388 -758 6696 96 57 88 chrX 98938521 98939735 -78034405 - THE1C-int LTR MaLR -404 1176 1 1974 125 78 14 chrX 98939735 98940079 -78034061 - THE1C LTR MaLR 0 375 10 3267 183 17 14 chrX 98940374 98941289 -78032851 + L1M4 LINE L1 4648 5564 -610 1891 151 13 0 chrX 98941287 98941605 -78032535 - L1MA5 LINE L1 -290 6010 5689 * 293 47 0 23 chrX 98941619 98941662 -78032478 + L1MA1 LINE L1 6214 6255 -47 * 909 145 113 16 chrX 98941651 98941954 -78032186 - L1MC/D LINE L1 -832 6323 1429 1786 269 100 30 chrX 98942004 98942812 -78031328 - L1MC/D LINE L1 -5662 1193 329 275 337 121 36 chrX 98944821 98945153 -78028987 - L2 LINE L2 -5 3308 2949 627 273 43 79 chrX 98945454 98945802 -78028338 - MLT1J2 LTR MaLR -112 338 1 482 31 0 15 chrX 98946350 98946415 -78027725 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 1470 159 60 3 chrX 98946451 98946734 -78027406 - L1MB7 LINE L1 -18 6166 5868 3457 27 2 0 chrX 98946842 98947287 -78026853 + L1PA3 LINE L1 5734 6179 0 2231 101 70 14 chrX 98950409 98950764 -78023376 - THE1C LTR MaLR 0 375 1 3301 112 6 12 chrX 98950764 98951245 -78022895 - THE1C-int LTR MaLR 0 1580 1103 502 142 47 9 chrX 98951347 98951453 -78022687 - FLAM_C SINE Alu -33 110 1 1127 234 141 37 chrX 98951947 98952508 -78021632 - L1ME4a LINE L1 -18 6103 5485 1032 172 0 6 chrX 98952524 98952698 -78021442 + FRAM SINE Alu 1 170 -6 415 265 51 13 chrX 98952757 98952991 -78021149 - L1ME4a LINE L1 -761 5385 5143 35 0 0 0 chrX 98953048 98953083 -78021057 + AT_rich Low_complexity Low_complexity 1 35 0 339 313 58 30 chrX 98953388 98953781 -78020359 - L1ME4a LINE L1 -1652 4494 4091 2210 114 10 0 chrX 98953781 98954089 -78020051 - AluSx SINE Alu -1 311 1 16986 188 16 9 chrX 98954089 98954906 -78019234 - L1PA15 LINE L1 -43 6773 5963 2400 96 0 0 chrX 98954906 98955209 -78018931 - AluY SINE Alu -8 303 1 16986 188 16 9 chrX 98955209 98956978 -78017162 - L1PA15 LINE L1 -853 5963 4208 414 0 0 0 chrX 98956978 98957024 -78017116 + (TG)n Simple_repeat Simple_repeat 2 47 0 16986 188 16 9 chrX 98957024 98958939 -78015201 - L1PA15 LINE L1 -2608 4208 2234 4149 188 26 36 chrX 98958944 98959797 -78014343 - L1PA15 LINE L1 -4713 2074 1231 368 280 17 8 chrX 98959808 98959926 -78014214 - L1PA12 LINE L1 -5250 2331 2213 435 299 41 8 chrX 98960902 98961133 -78013007 - L1PA12 LINE L1 -6994 591 1 2287 92 10 0 chrX 98961146 98961441 -78012699 - AluSx SINE Alu -4 308 11 428 262 71 30 chrX 98961495 98961663 -78012477 - L1ME4a LINE L1 -2853 3293 3119 25 75 0 0 chrX 98962015 98962068 -78012072 + AT_rich Low_complexity Low_complexity 1 53 0 570 262 138 19 chrX 98963922 98964132 -78010008 - MIR SINE MIR 0 262 28 691 247 46 23 chrX 98965636 98965810 -78008330 - MIR3 SINE MIR -16 192 15 25 51 0 0 chrX 98966323 98966362 -78007778 + AT_rich Low_complexity Low_complexity 1 39 0 352 308 51 13 chrX 98966440 98966596 -78007544 - L1ME4a LINE L1 -123 5998 5837 2297 91 3 0 chrX 98966665 98966963 -78007177 - AluSx SINE Alu -13 299 1 22 35 0 0 chrX 98967599 98967628 -78006512 + AT_rich Low_complexity Low_complexity 1 29 0 253 349 0 0 chrX 98967728 98967794 -78006346 - L2 LINE L2 -3 3269 3204 23 0 0 0 chrX 98968701 98968724 -78005416 + AT_rich Low_complexity Low_complexity 1 23 0 13266 46 1 1 chrX 98968729 98971130 -78003010 - L1PA6 LINE L1 -3 6151 3747 1558 142 6 122 chrX 98971254 98971599 -78002541 - AluJb SINE Alu -7 305 1 12024 160 22 12 chrX 98971611 98972772 -78001368 + L1MA3 LINE L1 2765 3913 -2392 10499 25 1 1 chrX 98972772 98974789 -77999351 + L1PA2 LINE L1 4138 6153 -2 12024 160 22 12 chrX 98974789 98977134 -77997006 + L1MA3 LINE L1 3913 6305 0 3484 149 2 10 chrX 98977312 98977914 -77996226 + L1MA5 LINE L1 5276 5872 -428 3842 115 8 26 chrX 98977915 98978664 -77995476 + L1PA15 LINE L1 5104 5833 -332 1803 160 15 12 chrX 98979016 98979359 -77994781 - L1MA6 LINE L1 -4 6296 5953 2208 85 14 3 chrX 98979361 98979654 -77994486 - AluSp SINE Alu -15 298 3 345 155 56 0 chrX 98979662 98979733 -77994407 - L1PA15 LINE L1 -6 6159 6085 10068 25 0 8 chrX 98979912 98981890 -77992250 - L1PA4 LINE L1 0 6155 4186 1187 141 0 11 chrX 98983027 98983204 -77990936 - AluJb SINE Alu -29 283 109 2085 120 32 42 chrX 99033212 99033580 -77940560 - L1M4c LINE L1 -4102 2282 1917 2217 114 7 0 chrX 99033580 99033886 -77940254 - AluSq SINE Alu -5 308 1 2085 120 32 42 chrX 99033886 99033949 -77940191 - L1M4c LINE L1 -4467 1917 1855 7503 159 35 5 chrX 99033953 99035396 -77938744 - L1M4c LINE L1 -4870 1514 28 730 182 23 0 chrX 99036666 99036798 -77937342 - LTR12 LTR ERV1 -225 489 355 319 206 0 0 chrX 99036798 99036871 -77937269 - LTR30 LTR ERV1 -102 620 548 916 142 150 43 chrX 99036871 99037125 -77937015 - LTR12 LTR ERV1 -433 281 1 305 302 17 43 chrX 99037270 99037386 -77936754 + MIR SINE MIR 3 115 -147 238 163 23 0 chrX 99037415 99037458 -77936682 + L2 LINE L2 3216 3259 -13 1056 269 12 8 chrX 99037959 99038204 -77935936 - MIR SINE MIR -15 247 2 291 188 83 10 chrX 99038667 99038763 -77935377 + L1ME4a LINE L1 6017 6119 -2 2015 153 0 6 chrX 99038774 99039088 -77935052 + AluJb SINE Alu 1 312 0 318 64 21 0 chrX 99039850 99039897 -77934243 - L1PB3 LINE L1 -8 6146 6099 201 344 47 52 chrX 99040363 99040555 -77933585 + L2 LINE L2 2783 2973 -341 209 33 33 0 chrX 99041867 99041897 -77932243 + (TC)n Simple_repeat Simple_repeat 2 32 0 210 37 0 0 chrX 99043067 99043094 -77931046 + (TG)n Simple_repeat Simple_repeat 2 28 0 190 246 70 0 chrX 99044347 99044404 -77929736 - MIR3 SINE MIR -144 64 4 2158 91 4 0 chrX 99044498 99044772 -77929368 - AluSp SINE Alu -38 275 1 336 150 0 0 chrX 99044900 99044960 -77929180 + FLAM_A SINE Alu 74 133 0 248 180 0 20 chrX 99044965 99045015 -77929125 + L2 LINE L2 3257 3305 -8 1975 159 24 0 chrX 99046118 99046451 -77927689 + MER7A DNA MER2_type 8 346 0 188 200 0 0 chrX 99046454 99046489 -77927651 - L2 LINE L2 -24 3289 3255 2633 61 0 0 chrX 99046588 99046898 -77927242 - AluSg SINE Alu 0 310 1 1823 132 38 14 chrX 99046945 99047233 -77926907 + AluJo SINE Alu 1 295 -17 2333 276 53 42 chrX 99047530 99048512 -77925628 + L1M4b LINE L1 11 1224 -5635 2422 248 86 29 chrX 99048974 99050314 -77923826 + L1M4b LINE L1 1190 2723 -4415 292 275 25 8 chrX 99050551 99050671 -77923469 + L1M4b LINE L1 2878 2999 -3960 509 184 0 0 chrX 99050684 99050793 -77923347 - L1M4 LINE L1 -3561 2585 2477 381 80 40 0 chrX 99050927 99051002 -77923138 + (TA)n Simple_repeat Simple_repeat 1 78 0 2069 209 17 25 chrX 99051002 99051592 -77922548 + L1M4b LINE L1 3269 3853 -3104 1421 128 31 0 chrX 99051592 99051788 -77922352 + AluJo SINE Alu 1 202 -110 2493 158 52 70 chrX 99051788 99052441 -77921699 + L1MB8 LINE L1 5538 6178 0 180 250 154 0 chrX 99052504 99052556 -77921584 + L2 LINE L2 3254 3313 0 405 0 0 0 chrX 99053074 99053119 -77921021 + (CA)n Simple_repeat Simple_repeat 2 46 0 686 235 135 5 chrX 99053285 99053485 -77920655 + MIR SINE MIR 33 258 -4 340 338 114 15 chrX 99053516 99053717 -77920423 - L2 LINE L2 -527 2787 2567 547 302 133 7 chrX 99053761 99054062 -77920078 - L2 LINE L2 -902 2412 2074 391 62 16 16 chrX 99057098 99057162 -77916978 + (TC)n Simple_repeat Simple_repeat 1 64 0 286 223 89 18 chrX 99057665 99057777 -77916363 + L1ME4a LINE L1 6001 6120 -1 318 341 59 35 chrX 99059334 99059706 -77914434 + L2 LINE L2 2596 2976 -338 1438 265 127 38 chrX 99059833 99060692 -77913448 + L2 LINE L2 2260 3169 -144 290 210 198 0 chrX 99060691 99060772 -77913368 - L2 LINE L2 -5 3308 3212 * 352 304 43 9 chrX 99060769 99060884 -77913256 + L2 LINE L2 3136 3254 -18 225 247 0 55 chrX 99060894 99060967 -77913173 + L2 LINE L2 3227 3295 -18 183 294 46 28 chrX 99062131 99062240 -77911900 - L2 LINE L2 -219 3053 2943 547 238 27 20 chrX 99062870 99063017 -77911123 - MIR SINE MIR -113 149 2 243 263 144 25 chrX 99063093 99063211 -77910929 - L3b LINE CR1 -131 1452 1321 2629 19 7 3 chrX 99063527 99063835 -77910305 - L1PA2 LINE L1 -4 6151 5843 2594 37 7 0 chrX 99063936 99064231 -77909909 - AluY SINE Alu -14 297 1 254 333 31 39 chrX 99065450 99065579 -77908561 + L2 LINE L2 3128 3255 -17 186 236 167 14 chrX 99066266 99066338 -77907802 + MIR SINE MIR 59 141 -67 300 248 96 25 chrX 99067151 99067312 -77906828 + MIR SINE MIR 34 201 -61 318 291 33 26 chrX 99067552 99067703 -77906437 - L2 LINE L2 -2 3311 3160 21 36 0 0 chrX 99068819 99068847 -77905293 + AT_rich Low_complexity Low_complexity 1 28 0 1201 135 0 0 chrX 99071315 99071485 -77902655 - AluJb SINE Alu -11 301 132 360 0 0 0 chrX 99071485 99071525 -77902615 + (TG)n Simple_repeat Simple_repeat 1 40 0 418 141 0 0 chrX 99071525 99071589 -77902551 - FRAM/FAM SINE Alu -116 60 1 360 0 0 0 chrX 99071589 99071629 -77902511 + (TG)n Simple_repeat Simple_repeat 1 40 0 1309 123 0 54 chrX 99071629 99071833 -77902307 - AluJb SINE Alu -116 196 4 1251 329 77 35 chrX 99071848 99072401 -77901739 + L2 LINE L2 2043 2654 -618 2068 137 3 0 chrX 99072401 99072693 -77901447 - AluSq SINE Alu -20 293 1 1251 329 77 35 chrX 99072693 99073096 -77901044 + L2 LINE L2 2654 3039 -233 443 259 61 14 chrX 99073160 99073307 -77900833 - MIR SINE MIR 0 262 109 333 331 39 0 chrX 99073349 99073476 -77900664 + L2 LINE L2 3141 3272 0 207 282 14 14 chrX 99073584 99073655 -77900485 + GA-rich Low_complexity Low_complexity 1 71 0 201 68 68 0 chrX 99073661 99073705 -77900435 + (TA)n Simple_repeat Simple_repeat 1 47 0 211 297 0 0 chrX 99074005 99074069 -77900071 + L2 LINE L2 1222 1285 -2029 859 294 94 82 chrX 99074117 99075145 -77898995 + L2 LINE L2 1712 2752 -562 447 53 0 0 chrX 99075146 99075203 -77898937 + Alu SINE Alu 1 57 -253 539 45 45 34 chrX 99075305 99075393 -77898747 + L1M4c LINE L1 2331 2419 -3965 3205 186 7 45 chrX 99075420 99076102 -77898038 + MLT1-int LTR MaLR 6 661 -710 8513 157 26 40 chrX 99076174 99077797 -77896343 + L1P LINE L1 11 1611 -4535 632 98 36 9 chrX 99077898 99078010 -77896130 - L1MA5 LINE L1 -234 6066 5952 240 320 177 5 chrX 99078013 99078216 -77895924 + L2 LINE L2 2612 2849 -465 1239 107 10 15 chrX 99078269 99078466 -77895674 - L1MA5 LINE L1 -357 5943 5748 438 266 122 14 chrX 99078467 99078606 -77895534 - HERVL40 LTR ERVL -1867 3663 3510 588 244 92 37 chrX 99078606 99078823 -77895317 - HERVL40 LTR ERVL -3193 2337 2109 198 0 0 0 chrX 99078996 99079018 -77895122 + (T)n Simple_repeat Simple_repeat 1 22 0 257 185 37 99 chrX 99079156 99079237 -77894903 - HERVL40 LTR ERVL -4357 1173 1098 840 246 127 9 chrX 99079656 99079876 -77894264 - REP3 LTR ERV -316 246 1 307 314 80 0 chrX 99080110 99080247 -77893893 + L2 LINE L2 2600 2747 -567 355 292 66 21 chrX 99080963 99081206 -77892934 + L1ME4a LINE L1 5711 5964 -157 360 176 0 0 chrX 99081206 99081274 -77892866 + (CATA)n Simple_repeat Simple_repeat 3 70 0 850 280 58 39 chrX 99081415 99081918 -77892222 - L1MC/D LINE L1 -730 5450 5283 311 227 13 0 chrX 99081932 99082007 -77892133 - L1MC5 LINE L1 -54 7907 7832 1031 172 54 68 chrX 99082022 99082346 -77891794 + MLT1A2 LTR MaLR 1 365 0 246 128 0 0 chrX 99082363 99082402 -77891738 + (T)n Simple_repeat Simple_repeat 1 39 0 596 258 60 92 chrX 99082423 99082577 -77891563 - L1MC5 LINE L1 -185 7776 7619 1833 173 0 22 chrX 99082577 99082890 -77891250 - AluJb SINE Alu -6 306 1 596 258 60 92 chrX 99082890 99083058 -77891082 - L1MC5 LINE L1 -342 7619 7447 909 128 0 0 chrX 99083058 99083191 -77890949 - FLAM_C SINE Alu 0 133 1 596 258 60 92 chrX 99083191 99083401 -77890739 - L1MC5 LINE L1 -514 7447 7260 598 214 31 41 chrX 99083550 99083746 -77890394 - L1MC5 LINE L1 -771 7190 6997 1328 289 66 9 chrX 99083746 99084172 -77889968 + LTR16A LTR ERVL 1 450 0 355 115 0 0 chrX 99084213 99084265 -77889875 - U5 snRNA snRNA -64 52 1 780 246 56 20 chrX 99084268 99084463 -77889677 + HERV16 LTR ERVL 41 242 -4754 850 153 0 0 chrX 99084488 99084625 -77889515 + FRAM SINE Alu 40 176 0 3055 281 91 22 chrX 99084648 99085677 -77888463 + HERV16 LTR ERVL 469 1568 -3428 1133 275 78 27 chrX 99086908 99087319 -77886821 - LTR16A LTR ERVL 0 450 19 305 267 67 9 chrX 99087330 99087435 -77886705 + MIR3 SINE MIR 92 202 -6 439 249 232 0 chrX 99087742 99087927 -77886213 + MIR SINE MIR 29 256 -6 609 172 80 20 chrX 99088213 99088364 -77885776 + MER5A DNA MER1_type 26 185 -4 488 127 0 53 chrX 99088693 99088837 -77885303 + MER5A DNA MER1_type 1 189 0 2279 87 0 14 chrX 99088878 99089199 -77884941 + AluY SINE Alu 1 317 0 1048 119 13 13 chrX 99089203 99089354 -77884786 + AluJb SINE Alu 138 288 -24 281 240 13 13 chrX 99090925 99091000 -77883140 + L1ME2 LINE L1 6071 6145 -19 6317 27 1 8 chrX 99091103 99091882 -77882258 + L1PA5 LINE L1 5409 6182 0 2218 337 52 24 chrX 99092034 99093482 -77880658 + HERV16 LTR ERVL 2254 3742 -1743 428 293 20 14 chrX 99093509 99093656 -77880484 + LTR16A LTR ERVL 282 429 -21 27593 77 6 5 chrX 99093894 99098472 -77875668 + L1PA7 LINE L1 1571 6154 0 568 288 33 16 chrX 99098465 99098649 -77875491 + MLT1D-int LTR MaLR 660 846 -525 * 2206 82 44 0 chrX 99098650 99098944 -77875196 + AluSp SINE Alu 1 307 -6 1235 261 34 84 chrX 99099095 99099536 -77874604 + MLT1D-int LTR MaLR 953 1371 0 1808 172 43 75 chrX 99099556 99099997 -77874143 + MLT1D LTR MaLR 72 498 -7 394 257 0 0 chrX 99100014 99100088 -77874052 - MER119 DNA MER1_type -469 114 41 789 163 258 0 chrX 99100127 99100305 -77873835 + MER58A DNA MER1_type 1 224 0 25 75 0 0 chrX 99100810 99100863 -77873277 + AT_rich Low_complexity Low_complexity 1 53 0 291 301 83 0 chrX 99101683 99101816 -77872324 + L2 LINE L2 2915 3058 -214 752 271 84 19 chrX 99104157 99104467 -77869673 + L1ME4a LINE L1 5540 5869 -252 303 28 0 0 chrX 99104473 99104509 -77869631 + (CA)n Simple_repeat Simple_repeat 1 36 0 193 323 51 87 chrX 99106415 99106610 -77867530 - MER5A DNA MER1_type 0 189 2 914 177 0 0 chrX 99108476 99108623 -77865517 - FRAM SINE Alu -22 154 8 538 176 34 61 chrX 99108654 99108802 -77865338 - MER103 DNA DNA -20 146 3 1496 122 30 4 chrX 99108815 99109045 -77865095 - MER46A DNA MER2_type 0 236 1 925 120 0 15 chrX 99109579 99109712 -77864428 - FLAM_C SINE Alu -2 131 1 1744 151 57 4 chrX 99109881 99110160 -77863980 + AluSx SINE Alu 1 294 -18 2413 82 0 25 chrX 99110325 99110641 -77863499 - AluSc SINE Alu -1 308 1 768 196 0 14 chrX 99110753 99110891 -77863249 + AluJo SINE Alu 1 136 -176 24 32 0 0 chrX 99112863 99112894 -77861246 + AT_rich Low_complexity Low_complexity 1 31 0 1488 146 37 7 chrX 99112938 99113232 -77860908 + L1MA4A LINE L1 6001 6303 0 501 274 48 16 chrX 99113290 99113414 -77860726 - L2 LINE L2 -2 3270 3143 526 69 0 0 chrX 99114771 99114843 -77859297 + L1PA14 LINE L1 6089 6160 -1 2325 78 10 0 chrX 99115455 99115749 -77858391 + AluSp SINE Alu 3 299 -14 1356 99 0 17 chrX 99115772 99115953 -77858187 + AluSc SINE Alu 1 178 -131 1604 211 0 3 chrX 99116053 99116361 -77857779 - AluJo SINE Alu 0 307 1 2142 118 0 0 chrX 99116395 99116683 -77857457 + AluSq SINE Alu 3 290 -23 22 0 0 0 chrX 99116683 99116705 -77857435 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chrX 99116784 99116818 -77857322 + AT_rich Low_complexity Low_complexity 1 34 0 598 276 93 108 chrX 99116944 99117223 -77856917 + L2 LINE L2 2998 3272 0 2160 116 0 7 chrX 99117428 99117720 -77856420 + AluSx SINE Alu 5 294 -18 747 304 81 72 chrX 99118600 99118945 -77855195 + L2 LINE L2 2924 3271 -1 446 307 39 7 chrX 99120427 99120580 -77853560 - HERVL40 LTR ERVL -1723 3807 3650 1381 159 10 10 chrX 99120657 99120953 -77853187 - L1MA5 LINE L1 0 6300 6005 45 89 0 18 chrX 99121152 99121321 -77852819 + AT_rich Low_complexity Low_complexity 1 166 0 2355 95 3 13 chrX 99121689 99122005 -77852135 + AluSp SINE Alu 1 313 0 620 201 6 13 chrX 99122459 99122618 -77851522 - L1ME4a LINE L1 -3 6118 5961 291 258 60 46 chrX 99123413 99123564 -77850576 + L1MC5 LINE L1 7765 7917 -44 531 0 0 0 chrX 99123564 99123623 -77850517 + (GA)n Simple_repeat Simple_repeat 2 60 0 190 378 49 62 chrX 99124072 99124297 -77849843 + L2 LINE L2 3050 3271 -1 197 306 99 58 chrX 99124342 99124463 -77849677 + MIR SINE MIR 51 176 -86 2391 73 0 3 chrX 99124511 99124811 -77849329 + AluSg SINE Alu 1 299 -11 303 269 0 0 chrX 99125215 99125323 -77848817 + (TG)n Simple_repeat Simple_repeat 2 109 0 1711 162 22 22 chrX 99125405 99125726 -77848414 - MLT1A1 LTR MaLR 0 365 45 592 161 26 14 chrX 99125728 99125917 -77848223 - MSTB1 LTR MaLR -2 455 193 866 181 47 0 chrX 99125917 99126066 -77848074 - AluSg/x SINE Alu -19 291 136 919 130 33 88 chrX 99126066 99126201 -77847939 - MSTB1 LTR MaLR -229 203 83 2159 149 91 8 chrX 99126201 99126596 -77847544 + MSTA LTR MaLR 1 428 0 919 130 33 88 chrX 99126596 99126675 -77847465 - MSTB1 LTR MaLR -349 83 1 3367 186 89 15 chrX 99126675 99127469 -77846671 - MSTB1-int LTR MaLR 0 1651 799 317 233 0 11 chrX 99127491 99127581 -77846559 - MSTB1-int LTR MaLR -999 652 564 242 227 13 13 chrX 99127623 99127698 -77846442 + LTR37B LTR ERV1 328 402 -66 2203 99 3 7 chrX 99127734 99128028 -77846112 + AluSx SINE Alu 1 293 -19 1413 153 24 40 chrX 99128209 99128458 -77845682 - AluJo SINE Alu -21 291 47 818 187 25 34 chrX 99128463 99128698 -77845442 + L1MB8 LINE L1 5946 6178 0 1398 158 21 106 chrX 99129422 99129752 -77844388 + AluJo SINE Alu 1 302 0 2317 238 89 26 chrX 99130514 99130794 -77843346 - L1ME LINE L1 -544 5618 5357 2142 117 0 32 chrX 99130794 99131103 -77843037 - AluSx SINE Alu -13 299 1 2317 238 89 26 chrX 99131103 99131216 -77842924 - L1ME LINE L1 -805 5357 5253 2023 120 3 11 chrX 99131216 99131533 -77842607 - AluSx SINE Alu 0 315 1 2317 238 89 26 chrX 99131533 99132490 -77841650 - L1ME LINE L1 -909 5253 4194 195 42 0 0 chrX 99133009 99133033 -77841107 + (CAAA)n Simple_repeat Simple_repeat 3 26 0 16026 108 18 14 chrX 99133234 99133438 -77840702 - Tigger1 DNA MER2_type 0 2418 2216 2257 102 10 0 chrX 99133438 99133733 -77840407 + AluSq SINE Alu 1 298 -15 16026 108 18 14 chrX 99133733 99135934 -77838206 - Tigger1 DNA MER2_type -202 2216 3 1567 149 118 0 chrX 99135950 99136205 -77837935 + AluJb SINE Alu 1 285 -27 297 0 0 0 chrX 99136205 99136238 -77837902 + (CA)n Simple_repeat Simple_repeat 2 34 0 1774 149 76 0 chrX 99136610 99136885 -77837255 + AluJo SINE Alu 1 296 -16 1974 91 101 11 chrX 99138080 99138356 -77835784 - AluSg SINE Alu -9 301 1 551 223 185 0 chrX 99138927 99139084 -77835056 - MIR SINE MIR -59 203 18 1149 93 0 0 chrX 99140235 99140408 -77833732 - AluSq SINE Alu 0 306 134 1195 109 22 0 chrX 99140500 99140683 -77833457 + MLT1B LTR MaLR 202 388 -2 2918 250 80 41 chrX 99140885 99140906 -77833234 + L1MEc LINE L1 99 118 -6278 2114 134 0 6 chrX 99140906 99141220 -77832920 - AluSx SINE Alu 0 312 1 2918 250 80 41 chrX 99141220 99142702 -77831438 + L1MEc LINE L1 118 1660 -4736 * 6968 7 0 0 chrX 99142694 99143510 -77830630 + L1HS LINE L1 5338 6153 -2 534 275 57 29 chrX 99143607 99143851 -77830289 + L1M4 LINE L1 14 264 -6278 1010 238 172 32 chrX 99143855 99144326 -77829814 + L1M4 LINE L1 625 1161 -5381 306 0 0 0 chrX 99144349 99144383 -77829757 + (A)n Simple_repeat Simple_repeat 1 34 0 1167 193 41 73 chrX 99144386 99144728 -77829412 - MLT1A1 LTR MaLR -32 333 3 748 155 56 6 chrX 99144752 99144913 -77829227 - L1MA8 LINE L1 -3 6288 6120 5474 104 5 15 chrX 99144915 99145369 -77828771 + L1PA15 LINE L1 5325 5782 -383 2203 114 0 0 chrX 99145369 99145650 -77828490 + AluSq SINE Alu 1 281 -32 957 43 29 7 chrX 99145652 99145790 -77828350 + (GAAA)n Simple_repeat Simple_repeat 2 142 0 5474 104 5 15 chrX 99145790 99146175 -77827965 + L1PA15 LINE L1 5783 6158 -7 32 43 0 0 chrX 99146175 99146221 -77827919 + AT_rich Low_complexity Low_complexity 1 46 0 4093 216 39 16 chrX 99146329 99146514 -77827626 + L1M4 LINE L1 3355 3534 -3110 1914 163 0 19 chrX 99146514 99146827 -77827313 + AluJo SINE Alu 1 307 -5 4093 216 39 16 chrX 99146827 99147860 -77826280 + L1M4 LINE L1 3534 4602 -2042 225 0 0 0 chrX 99147860 99147885 -77826255 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1878 115 0 51 chrX 99147887 99148183 -77825957 - AluSx SINE Alu -31 281 1 343 156 0 16 chrX 99148183 99148247 -77825893 + L1ME LINE L1 5579 5641 -525 464 296 3 20 chrX 99148604 99148806 -77825334 - MLT1L LTR MaLR -16 599 374 308 331 21 41 chrX 99148963 99149108 -77825032 - MLT1K LTR MaLR -445 143 2 2526 103 31 14 chrX 99149802 99150160 -77823980 - THE1B LTR MaLR 0 364 1 2126 107 24 3 chrX 99150282 99150573 -77823567 - AluSq SINE Alu -16 297 1 223 266 0 16 chrX 99151117 99151181 -77822959 + CT-rich Low_complexity Low_complexity 2 64 0 2231 187 83 5 chrX 99151197 99151749 -77822391 - L1MD3 LINE L1 0 7995 7401 2253 120 3 0 chrX 99151793 99152101 -77822039 - AluSx SINE Alu -3 309 1 22 0 0 0 chrX 99152544 99152566 -77821574 + AT_rich Low_complexity Low_complexity 1 22 0 248 157 84 72 chrX 99152758 99152841 -77821299 + MIR SINE MIR 103 186 -76 805 131 82 0 chrX 99152864 99152986 -77821154 - FLAM_C SINE Alu -10 133 2 2061 279 67 44 chrX 99152991 99153282 -77820858 - L1MEc LINE L1 -3873 2523 2240 1017 209 87 48 chrX 99153282 99153617 -77820523 - MER7A DNA MER2_type 0 346 1 2061 279 67 44 chrX 99153617 99153803 -77820337 - L1MEc LINE L1 -4156 2240 2060 1128 205 19 0 chrX 99153803 99154018 -77820122 + MER20 DNA MER1_type 1 219 0 2061 279 67 44 chrX 99154018 99154571 -77819569 - L1MEc LINE L1 -4336 2060 1449 1698 188 47 3 chrX 99154571 99154869 -77819271 - AluJb SINE Alu -1 311 1 2061 279 67 44 chrX 99154869 99155256 -77818884 - L1MEc LINE L1 -4947 1449 1072 1589 171 58 3 chrX 99155259 99155586 -77818554 - L1MB5 LINE L1 -7 6167 5823 292 258 10 10 chrX 99155587 99155684 -77818456 - L1MEc LINE L1 -5493 903 807 2540 115 71 34 chrX 99155689 99156125 -77818015 - LTR47A LTR ERVL 0 452 1 252 0 0 0 chrX 99156686 99156714 -77817426 + (TC)n Simple_repeat Simple_repeat 2 29 0 264 167 0 0 chrX 99156714 99156762 -77817378 + (TA)n Simple_repeat Simple_repeat 2 49 0 287 200 50 0 chrX 99156870 99156930 -77817210 - L2 LINE L2 0 3313 3251 1333 261 162 28 chrX 99156938 99157505 -77816635 - L2 LINE L2 -858 2456 1814 1061 270 32 14 chrX 99157602 99157880 -77816260 + MER70B LTR ERVL 168 450 -128 325 226 142 9 chrX 99157976 99158082 -77816058 - L2 LINE L2 -1509 1805 1686 302 311 132 0 chrX 99158469 99158575 -77815565 - L2 LINE L2 0 3313 3194 720 87 19 0 chrX 99158575 99158679 -77815461 - AluSx SINE Alu -13 297 192 1203 64 0 0 chrX 99158680 99158821 -77815319 - AluSx SINE Alu -172 141 1 586 274 95 68 chrX 99158821 99159256 -77814884 - L2 LINE L2 -103 3210 2771 2723 22 28 0 chrX 99159319 99159636 -77814504 - LTR17 LTR ERV1 -454 326 1 14608 41 1 0 chrX 99159636 99161359 -77812781 - HERV17 LTR ERV1 0 8626 6902 5942 41 6 1 chrX 99161350 99162060 -77812080 - HERV17 LTR ERV1 -3559 5067 4355 * 3166 159 92 20 chrX 99162061 99162506 -77811634 - L1MB5 LINE L1 -39 6135 5623 2531 65 0 0 chrX 99162506 99162812 -77811328 - AluY SINE Alu -5 306 1 3166 159 92 20 chrX 99162812 99163050 -77811090 - L1MB5 LINE L1 -551 5623 5403 393 208 0 0 chrX 99163048 99163125 -77811015 - L1MB5 LINE L1 -1064 5082 5006 * 359 197 0 0 chrX 99163127 99163193 -77810947 + L1M4 LINE L1 4019 4084 -2062 * 4130 241 57 22 chrX 99163192 99164069 -77810071 - L1MB5 LINE L1 -2103 4043 3101 1586 177 45 28 chrX 99164069 99164357 -77809783 - AluJo SINE Alu -19 293 1 4130 241 57 22 chrX 99164357 99164840 -77809300 - L1MB5 LINE L1 -3045 3101 2636 1357 146 29 0 chrX 99164873 99165200 -77808940 + L1M2 LINE L1 5101 5440 -743 2470 75 3 0 chrX 99165200 99165506 -77808634 + AluSq SINE Alu 1 307 -6 643 246 131 6 chrX 99165542 99165725 -77808415 - MIR SINE MIR -2 260 55 237 286 0 92 chrX 99165725 99165823 -77808317 - MIR SINE MIR -173 89 1 734 206 82 5 chrX 99165898 99166092 -77808048 - MLT1A1 LTR MaLR -13 352 144 699 181 42 7 chrX 99166317 99166461 -77807679 - MLT1A1 LTR MaLR -216 149 1 1520 85 0 9 chrX 99166474 99166685 -77807455 + L1PA10 LINE L1 5939 6147 -21 204 40 0 0 chrX 99166685 99166710 -77807430 + (TTAAA)n Simple_repeat Simple_repeat 1 25 0 864 273 87 14 chrX 99166743 99167088 -77807052 - L1MC/D LINE L1 -2004 5804 5435 4793 184 69 14 chrX 99167088 99167463 -77806677 + L1MC4a LINE L1 6677 7030 -778 1231 183 35 120 chrX 99167463 99167862 -77806278 + MLT1A1 LTR MaLR 1 365 0 4793 184 69 14 chrX 99167862 99168554 -77805586 + L1MC4a LINE L1 7030 7803 -5 749 178 0 0 chrX 99168803 99168932 -77805208 - FLAM_C SINE Alu -4 129 1 1573 206 54 13 chrX 99169113 99169501 -77804639 - L1ME1 LINE L1 -21 6145 5742 32 57 0 0 chrX 99169803 99169856 -77804284 + AT_rich Low_complexity Low_complexity 1 53 0 446 235 59 59 chrX 99169988 99170209 -77803931 - L1MC4a LINE L1 -155 5966 5744 1743 144 23 40 chrX 99170223 99170569 -77803571 - L1MB8 LINE L1 -9 6169 5830 4916 245 66 10 chrX 99170569 99171132 -77803008 - L1MEc LINE L1 -2522 3860 3330 2413 85 0 7 chrX 99171132 99171439 -77802701 - AluY SINE Alu -4 307 3 4916 245 66 10 chrX 99171439 99171593 -77802547 - L1MEc LINE L1 -3052 3330 3186 783 125 0 76 chrX 99171593 99171737 -77802403 - FLAM_C SINE Alu 0 133 1 4916 245 66 10 chrX 99171737 99172909 -77801231 - L1MEc LINE L1 -3196 3186 1900 1664 269 69 12 chrX 99173075 99173732 -77800408 - L1M3b LINE L1 -4543 1770 1160 398 210 188 7 chrX 99173732 99173870 -77800270 - MIR SINE MIR -99 163 1 2201 120 0 0 chrX 99176644 99176943 -77797197 - AluSx SINE Alu -13 299 1 2453 281 110 28 chrX 99176983 99177933 -77796207 + HAL1 LINE L1 11 1044 -1463 1549 126 21 123 chrX 99177933 99178258 -77795882 + AluJo SINE Alu 6 297 -15 2453 281 110 28 chrX 99178258 99178283 -77795857 + HAL1 LINE L1 1044 1066 -1441 624 228 82 35 chrX 99178340 99178595 -77795545 + L1MB1 LINE L1 2202 2468 -3916 * 7806 133 19 83 chrX 99178588 99181456 -77792684 + L1MA5A LINE L1 3626 6293 -4 23 33 0 0 chrX 99181457 99181487 -77792653 + AT_rich Low_complexity Low_complexity 1 30 0 5362 164 33 11 chrX 99181707 99183224 -77790916 + L1MB1 LINE L1 4479 6043 -361 1950 146 0 4 chrX 99183224 99183556 -77790584 + AluSg SINE Alu 1 331 0 5362 164 33 11 chrX 99183556 99183903 -77790237 + L1MB1 LINE L1 6043 6381 -23 2332 82 0 3 chrX 99184330 99184621 -77789519 - AluSq SINE Alu -23 290 1 333 0 0 0 chrX 99184762 99184799 -77789341 + (CA)n Simple_repeat Simple_repeat 2 38 0 1187 155 45 47 chrX 99184997 99185756 -77788384 - L1MC3 LINE L1 -2 7783 6877 505 165 0 11 chrX 99185821 99185912 -77788228 - L1MC3 LINE L1 -823 6962 6873 7579 186 34 68 chrX 99185977 99187485 -77786655 - L1MC3 LINE L1 -749 5677 5926 2073 122 3 7 chrX 99187485 99187810 -77786330 + AluSx SINE Alu 1 324 0 7579 186 34 68 chrX 99187810 99189817 -77784323 - L1MC3 LINE L1 -499 5927 3852 5342 175 133 131 chrX 99189816 99192091 -77782049 - L1MC3 LINE L1 -4127 2299 19 * 875 275 96 66 chrX 99192095 99192435 -77781705 - L1ME3A LINE L1 -281 5889 5522 2051 107 0 30 chrX 99192435 99192733 -77781407 - AluSx SINE Alu 0 312 24 875 275 96 66 chrX 99192733 99192984 -77781156 - L1ME3A LINE L1 -648 5522 5280 483 288 78 18 chrX 99192980 99193414 -77780726 + L1ME2 LINE L1 5078 5536 -626 * 242 170 0 38 chrX 99193424 99193477 -77780663 + L1ME2 LINE L1 5605 5655 -515 1089 175 16 0 chrX 99193481 99193664 -77780476 + MER5A DNA MER1_type 4 189 0 516 209 130 67 chrX 99193678 99193917 -77780223 + MER112 DNA MER1_type 7 260 0 317 258 125 40 chrX 99193928 99194176 -77779964 + L1ME2 LINE L1 5666 5950 -214 2219 87 7 7 chrX 99194802 99195090 -77779050 - AluSg SINE Alu -22 288 1 259 108 0 0 chrX 99196212 99196249 -77777891 - MER96 DNA MER1_type? -3 172 136 485 247 90 60 chrX 99196260 99196635 -77777505 - L1MC5 LINE L1 -236 7725 7335 819 191 112 0 chrX 99196635 99196823 -77777317 - MER3 DNA MER1_type 0 209 1 485 247 90 60 chrX 99196823 99196860 -77777280 - L1MC5 LINE L1 -626 7335 7301 326 294 42 35 chrX 99196834 99196977 -77777163 - L1MC4 LINE L1 -547 7495 7352 * 1380 255 86 67 chrX 99197011 99197282 -77776858 - L1MC4 LINE L1 -737 7224 6960 2385 75 0 0 chrX 99197282 99197575 -77776565 + AluSg SINE Alu 1 293 -17 1380 255 86 67 chrX 99197575 99197978 -77776162 - L1MC4 LINE L1 -1001 6960 6566 2383 50 0 7 chrX 99197978 99198281 -77775859 - L1PA8 LINE L1 0 6172 5872 1380 255 86 67 chrX 99198281 99199337 -77774803 - L1MC4 LINE L1 -1395 6566 5521 1511 269 25 34 chrX 99199338 99199649 -77774491 + L1ME3 LINE L1 5076 5388 -774 851 98 8 38 chrX 99199649 99199781 -77774359 + FLAM_C SINE Alu 1 128 -5 1511 269 25 34 chrX 99199781 99200261 -77773879 + L1ME3 LINE L1 5388 5856 -306 384 322 63 19 chrX 99200331 99200536 -77773604 - L2 LINE L2 -148 3165 2952 3819 219 65 14 chrX 99200539 99201724 -77772416 + L1MB7 LINE L1 2747 3992 -2154 1970 186 164 0 chrX 99201730 99202145 -77771995 + MLT1D LTR MaLR 1 483 -22 5296 186 74 33 chrX 99202186 99202502 -77771638 + L1MB7 LINE L1 3999 4300 -1884 2177 128 0 0 chrX 99202502 99202807 -77771333 + AluSx SINE Alu 1 305 -7 5296 186 74 33 chrX 99202807 99202919 -77771221 + L1MB7 LINE L1 4300 4406 -1778 1888 161 0 13 chrX 99202919 99203223 -77770917 + AluJo SINE Alu 1 300 -12 5296 186 74 33 chrX 99203223 99204521 -77769619 + L1MB7 LINE L1 4406 5826 -358 2185 134 16 16 chrX 99204521 99204894 -77769246 + THE1C LTR MaLR 1 373 -2 5296 186 74 33 chrX 99204894 99205269 -77768871 + L1MB7 LINE L1 5826 6184 0 1120 257 83 48 chrX 99205326 99205909 -77768231 + L1ME3A LINE L1 4475 5095 -1051 2013 111 21 7 chrX 99205909 99206197 -77767943 + AluSx SINE Alu 3 294 -18 1120 257 83 48 chrX 99206197 99206410 -77767730 + L1ME3A LINE L1 5095 5299 -847 486 238 25 0 chrX 99206711 99206833 -77767307 + L1ME3A LINE L1 5320 5444 -726 342 0 0 0 chrX 99206879 99206917 -77767223 + (CA)n Simple_repeat Simple_repeat 2 39 0 875 210 50 50 chrX 99207036 99207317 -77766823 + L1MC4 LINE L1 7761 8041 -1 1768 138 3 87 chrX 99207369 99207702 -77766438 + AluSx SINE Alu 1 305 -7 1188 258 58 60 chrX 99207738 99208273 -77765867 + L1ME3A LINE L1 5428 5961 -209 276 182 40 50 chrX 99208328 99208427 -77765713 + L1ME3A LINE L1 5965 6062 -108 1708 171 125 23 chrX 99208533 99208918 -77765222 + MLT1C LTR MaLR 6 429 -38 292 83 0 42 chrX 99208949 99208997 -77765143 - MLT1B LTR MaLR 0 390 345 6265 189 37 46 chrX 99208997 99210365 -77763775 + MLT1C-int LTR MaLR 16 1371 0 1829 209 63 16 chrX 99210370 99210811 -77763329 + MLT1C LTR MaLR 6 467 0 1260 184 22 29 chrX 99210845 99211117 -77763023 + L1ME2 LINE L1 5813 6082 -82 755 169 22 109 chrX 99211140 99211323 -77762817 - MER63A DNA MER1_type -42 168 2 248 219 14 27 chrX 99211323 99211396 -77762744 + L1ME2 LINE L1 6074 6145 -19 25 65 0 0 chrX 99211688 99211734 -77762406 + AT_rich Low_complexity Low_complexity 1 46 0 1761 33 0 0 chrX 99211804 99212015 -77762125 - L1PA4 LINE L1 -2214 3932 3722 12096 28 0 0 chrX 99212018 99214215 -77759925 + L1PA4 LINE L1 3952 6149 -6 502 385 62 30 chrX 99214358 99215120 -77759020 - L2 LINE L2 -1694 1620 835 708 268 50 17 chrX 99215272 99215511 -77758629 + MIR SINE MIR 14 260 -2 553 230 8 0 chrX 99215738 99215864 -77758276 + L1M4 LINE L1 4826 4952 -1194 618 234 5 85 chrX 99215873 99216074 -77758066 + L1ME1 LINE L1 179 363 -6179 956 219 34 53 chrX 99216118 99216643 -77757497 + L1ME1 LINE L1 2305 2824 -3820 * 1469 233 34 30 chrX 99216640 99217138 -77757002 - L1M4 LINE L1 -2856 3290 2791 470 218 20 0 chrX 99217117 99217218 -77756922 - L1M4 LINE L1 -2018 4128 4026 * 848 209 47 54 chrX 99217226 99217523 -77756617 + L1ME1 LINE L1 5333 5627 -1017 5325 166 59 12 chrX 99217589 99219247 -77754893 + L1MB3 LINE L1 4442 6182 -1 4448 192 19 7 chrX 99219227 99220189 -77753951 + L1ME1 LINE L1 5642 6614 -50 * 1157 194 32 5 chrX 99220734 99220950 -77753190 - MIR SINE MIR -34 228 7 953 300 96 21 chrX 99221046 99221566 -77752574 + L2 LINE L2 2188 2746 -568 378 338 86 68 chrX 99222050 99222445 -77751695 + L2 LINE L2 2793 3189 -83 483 341 31 95 chrX 99223438 99223763 -77750377 - L2 LINE L2 -10 3262 2959 425 311 37 22 chrX 99224090 99224225 -77749915 - L2 LINE L2 -3 3269 3133 306 367 196 20 chrX 99224478 99224819 -77749321 - L2 LINE L2 -580 2734 2334 306 353 107 5 chrX 99224957 99225144 -77748996 + L1ME3A LINE L1 5963 6168 -2 205 161 0 0 chrX 99226530 99226561 -77747579 + MIR SINE MIR 4 34 -228 255 186 17 34 chrX 99226562 99226621 -77747519 + L1MC4a LINE L1 5344 5401 -2407 1435 144 141 18 chrX 99226628 99226955 -77747185 + L1MC3 LINE L1 7418 7784 -1 1179 245 101 53 chrX 99226949 99227553 -77746587 + L1MC4a LINE L1 5423 6055 -1753 * 398 256 128 15 chrX 99227730 99227863 -77746277 + MIR SINE MIR 1 148 -114 1986 157 0 0 chrX 99229373 99229673 -77744467 + AluJb SINE Alu 3 302 -10 219 340 190 0 chrX 99230051 99230151 -77743989 - MIR3 SINE MIR -48 160 42 202 87 43 0 chrX 99230753 99230799 -77743341 + A-rich Low_complexity Low_complexity 2 49 0 2471 135 28 19 chrX 99232203 99232633 -77741507 + Tigger2a DNA MER2_type 1 434 0 2674 180 86 8 chrX 99233286 99233937 -77740203 + L1MB8 LINE L1 4349 5050 -1096 2225 102 7 0 chrX 99233940 99234233 -77739907 + AluSq SINE Alu 1 295 -18 1704 180 20 6 chrX 99234238 99234582 -77739558 + L1MB8 LINE L1 5743 6091 -87 28 29 0 0 chrX 99234624 99234659 -77739481 + AT_rich Low_complexity Low_complexity 1 35 0 1027 276 65 58 chrX 99234969 99235535 -77738605 + L1ME4a LINE L1 5294 5863 -258 264 352 111 25 chrX 99235626 99236208 -77737932 - L2 LINE L2 -19 3294 2627 309 248 70 96 chrX 99236220 99236377 -77737763 + HAL1 LINE L1 22 174 -2333 3655 242 137 34 chrX 99236387 99237903 -77736237 + HAL1 LINE L1 262 1932 -575 1015 265 75 19 chrX 99237924 99238350 -77735790 + HAL1 LINE L1 2001 2450 -57 288 345 134 7 chrX 99238366 99238641 -77735499 - L2 LINE L2 -703 2611 2302 1560 184 7 7 chrX 99239665 99239953 -77734187 + AluJb SINE Alu 1 288 -24 1486 224 82 89 chrX 99240030 99240524 -77733616 - MLT1E2 LTR MaLR 0 626 130 1809 166 0 7 chrX 99240524 99240825 -77733315 - AluJb SINE Alu -13 299 1 1486 224 82 89 chrX 99240825 99240847 -77733293 - MLT1E2 LTR MaLR -496 130 109 2173 114 3 0 chrX 99240847 99241146 -77732994 + AluSg SINE Alu 1 300 -10 1486 224 82 89 chrX 99241146 99241258 -77732882 - MLT1E2 LTR MaLR -517 109 1 328 221 13 13 chrX 99241472 99241549 -77732591 + MER116 DNA Mariner 3 79 -1 1725 164 18 0 chrX 99241651 99241937 -77732203 - AluJb SINE Alu -21 291 1 1096 135 11 17 chrX 99242069 99242247 -77731893 - AluSp SINE Alu -16 297 121 347 215 14 29 chrX 99242295 99242464 -77731676 + MLT1J LTR MaLR 1 188 -323 366 230 143 97 chrX 99242493 99242710 -77731430 + MLT1J LTR MaLR 177 403 -108 198 0 0 0 chrX 99242887 99242909 -77731231 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1428 188 0 20 chrX 99242917 99243167 -77730973 + Tigger7 DNA MER2_type 1 245 -2242 6314 206 74 40 chrX 99243167 99243973 -77730167 + L1MD2 LINE L1 3029 3806 -2553 2208 106 10 0 chrX 99243973 99244274 -77729866 + AluSq SINE Alu 1 304 -9 6314 206 74 40 chrX 99244274 99246684 -77727456 + L1MD2 LINE L1 3806 6358 -1 280 206 32 0 chrX 99246942 99247005 -77727135 - MLT1J2 LTR MaLR -22 428 364 26 39 0 20 chrX 99248945 99248966 -77725174 + AT_rich Low_complexity Low_complexity 1 21 -29 1941 115 40 4 chrX 99248966 99249244 -77724896 + AluSx SINE Alu 1 288 -24 26 39 0 20 chrX 99249244 99249273 -77724867 + AT_rich Low_complexity Low_complexity 21 50 0 1492 198 43 0 chrX 99250425 99250703 -77723437 - AluJo SINE Alu -22 290 1 572 278 0 23 chrX 99251501 99251634 -77722506 + MIR SINE MIR 16 145 -63 545 262 45 6 chrX 99252078 99252240 -77721900 - MIR SINE MIR -56 206 38 1432 250 62 111 chrX 99252616 99253532 -77720608 - L1MC4 LINE L1 -17 8025 7155 409 134 107 54 chrX 99253491 99253603 -77720537 + L1MB8 LINE L1 6061 6178 0 * 1576 257 102 28 chrX 99253759 99254781 -77719359 - L1MC4 LINE L1 -724 7164 5955 847 255 107 42 chrX 99255364 99255842 -77718298 + L1ME4a LINE L1 5495 6003 -118 373 275 17 25 chrX 99256658 99256778 -77717362 - MIR3 SINE MIR -1 207 89 1761 191 0 3 chrX 99257694 99257987 -77716153 - AluJo SINE Alu -20 292 1 279 0 0 0 chrX 99258704 99258735 -77715405 + (CA)n Simple_repeat Simple_repeat 1 31 0 2226 82 0 4 chrX 99258937 99259217 -77714923 + AluSg SINE Alu 1 279 -31 314 263 0 42 chrX 99259219 99259314 -77714826 + L1MC4 LINE L1 6613 6703 -1339 304 311 0 0 chrX 99259266 99259356 -77714784 - L1MC4 LINE L1 -1337 6705 6616 * 201 94 0 0 chrX 99259360 99259392 -77714748 + (TA)n Simple_repeat Simple_repeat 2 33 0 1857 168 0 16 chrX 99260874 99261184 -77712956 + AluJb SINE Alu 1 305 -7 1196 235 63 11 chrX 99261531 99261816 -77712324 + L1MD1 LINE L1 24 323 -6536 263 197 66 0 chrX 99262169 99262230 -77711910 + L1MD1 LINE L1 985 1049 -5908 334 284 57 105 chrX 99262501 99262792 -77711348 + L1MD1 LINE L1 982 1399 -5558 406 175 70 26 chrX 99262842 99262956 -77711184 + L1MD1 LINE L1 1403 1521 -5439 42735 33 23 2 chrX 99262956 99269007 -77705133 + L1PA2 LINE L1 2 6155 0 4344 212 71 83 chrX 99269025 99269940 -77704200 + L1MD1 LINE L1 1483 2407 -4550 1887 145 84 0 chrX 99269940 99270251 -77703889 - MER1B DNA MER1_type 0 337 1 4344 212 71 83 chrX 99270251 99272007 -77702133 + L1MD1 LINE L1 2407 4182 -2775 2334 53 0 4 chrX 99272007 99272336 -77701804 + AluY SINE Alu 1 328 0 1096 120 0 36 chrX 99272337 99272504 -77701636 + AluSg/x SINE Alu 133 293 -19 4344 212 71 83 chrX 99272504 99272957 -77701183 + L1MD1 LINE L1 4181 4744 -2213 * 5468 173 19 16 chrX 99272953 99274342 -77699798 + L1MD1 LINE L1 5661 7053 0 782 281 8 56 chrX 99274372 99274621 -77699519 + MIR SINE MIR 26 262 0 241 224 0 0 chrX 99274913 99274962 -77699178 + (TGG)n Simple_repeat Simple_repeat 1 49 0 352 271 21 29 chrX 99275182 99275322 -77698818 + L1 LINE L1 3433 3571 -2575 411 275 48 34 chrX 99275337 99275544 -77698596 - L1ME LINE L1 -422 5699 5490 21 0 0 0 chrX 99276995 99277016 -77697124 + AT_rich Low_complexity Low_complexity 1 21 0 286 123 13 3 chrX 99277116 99277344 -77696796 + AluSx SINE Alu 1 300 -1 2345 94 0 0 chrX 99277602 99277900 -77696240 - AluY SINE Alu -13 298 1 2748 110 0 0 chrX 99278551 99278915 -77695225 - THE1B LTR MaLR 0 364 1 1688 182 3 20 chrX 99279230 99279526 -77694614 + AluJo SINE Alu 1 291 -21 472 250 16 0 chrX 99280427 99280641 -77693499 + L1MB7 LINE L1 5917 6171 -13 247 339 45 18 chrX 99280666 99280778 -77693362 - MIR SINE MIR -58 150 36 648 140 0 0 chrX 99281218 99281325 -77692815 + (TC)n Simple_repeat Simple_repeat 2 108 0 1997 152 0 13 chrX 99281325 99281641 -77692499 - AluJb SINE Alu 0 312 1 2069 242 44 69 chrX 99282640 99283524 -77690616 + L1M4b LINE L1 3 937 -5922 2047 126 16 52 chrX 99283524 99283905 -77690235 + L1MB7 LINE L1 5818 6184 0 2396 216 53 5 chrX 99283908 99284543 -77689597 + L1 LINE L1 3889 4554 -1592 700 247 68 34 chrX 99284544 99284779 -77689361 + MLT1E2 LTR MaLR 1 243 -383 3429 167 98 18 chrX 99284786 99285517 -77688623 + L1MB8 LINE L1 5362 6151 -27 191 182 30 106 chrX 99285652 99285718 -77688422 + L2 LINE L2 3245 3305 -8 1841 114 7 11 chrX 99286035 99286308 -77687832 + AluSc SINE Alu 34 305 -4 315 300 36 36 chrX 99286331 99286471 -77687669 - L1M LINE L1 -694 5427 5288 22 0 0 0 chrX 99286471 99286493 -77687647 + AT_rich Low_complexity Low_complexity 1 22 0 2779 179 86 6 chrX 99286493 99287029 -77687111 - L1PB4 LINE L1 -42 6114 5536 1495 229 32 90 chrX 99287223 99287821 -77686319 + L1MC4a LINE L1 5369 5931 -1877 2053 106 13 13 chrX 99288102 99288403 -77685737 - AluSx SINE Alu -11 301 1 26 88 0 0 chrX 99288640 99288708 -77685432 + AT_rich Low_complexity Low_complexity 1 68 0 394 284 54 73 chrX 99288771 99289180 -77684960 - L1M4 LINE L1 -1483 4663 4263 875 152 101 17 chrX 99289401 99289579 -77684561 - MER20 DNA MER1_type -26 193 1 353 328 78 25 chrX 99289727 99289931 -77684209 + L1 LINE L1 4697 4911 -1235 1711 173 18 0 chrX 99290104 99290381 -77683759 + AluJo SINE Alu 1 282 -30 2757 219 58 49 chrX 99290401 99290505 -77683635 + L1MD1 LINE L1 18 120 -6420 828 139 0 44 chrX 99290505 99290642 -77683498 + FLAM_C SINE Alu 3 133 0 2757 219 58 49 chrX 99290642 99291475 -77682665 + L1MD1 LINE L1 120 944 -5596 578 14 0 14 chrX 99291475 99291547 -77682593 + (GAAA)n Simple_repeat Simple_repeat 2 72 0 2757 219 58 49 chrX 99291547 99292262 -77681878 + L1MD1 LINE L1 944 1988 -4552 1261 27 0 0 chrX 99292262 99292410 -77681730 + AluY SINE Alu 159 306 -5 2939 192 57 12 chrX 99292410 99293461 -77680679 + L1MD1 LINE L1 1992 3088 -3452 685 213 67 38 chrX 99293478 99293718 -77680422 - L1MA9 LINE L1 -38 6274 6028 397 100 0 0 chrX 99293727 99293787 -77680353 - L1PB3 LINE L1 -10 6144 6085 1993 127 34 0 chrX 99293805 99294096 -77680044 + AluSx SINE Alu 1 301 -11 4779 218 89 42 chrX 99294096 99294580 -77679560 + L1MD1 LINE L1 3074 3534 -3006 2110 106 0 0 chrX 99294580 99294886 -77679254 - AluSx SINE Alu 0 306 1 4779 218 89 42 chrX 99294886 99296075 -77678065 + L1MD1 LINE L1 3534 4826 -1714 2829 161 46 19 chrX 99296202 99296682 -77677458 + L1MD1 LINE L1 5722 6224 -412 1833 137 48 0 chrX 99296682 99296802 -77677338 + AluJb SINE Alu 1 114 -330 207 0 0 0 chrX 99296802 99296825 -77677315 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1833 137 48 0 chrX 99296825 99297135 -77677005 + AluJb SINE Alu 114 444 0 2829 161 46 19 chrX 99297135 99297243 -77676897 + L1MD1 LINE L1 6224 6328 -308 315 119 45 0 chrX 99298234 99298301 -77675839 - L1MA3 LINE L1 0 6305 6236 2341 79 3 0 chrX 99298616 99298908 -77675232 + AluSg SINE Alu 1 293 -17 2133 122 0 3 chrX 99299575 99299869 -77674271 - AluJb SINE Alu -19 293 1 603 270 72 45 chrX 99301122 99301698 -77672442 + L1MEd LINE L1 938 1603 -887 1450 210 127 22 chrX 99301782 99302000 -77672140 - HsTC2 DNA Tc2 -44 1854 1660 2177 116 13 0 chrX 99302000 99302303 -77671837 - AluSx SINE Alu -5 307 1 1450 210 127 22 chrX 99302303 99302621 -77671519 - HsTC2 DNA Tc2 -238 1660 1262 430 192 92 54 chrX 99302622 99302752 -77671388 - HsTC2 DNA Tc2 -1760 138 4 229 360 30 10 chrX 99302759 99302859 -77671281 - MARNA DNA Mariner -437 149 48 27 62 0 0 chrX 99303030 99303078 -77671062 + AT_rich Low_complexity Low_complexity 1 48 0 552 306 84 37 chrX 99303516 99303612 -77670528 - L1MEc LINE L1 -3568 2647 2557 2074 107 3 58 chrX 99303612 99303938 -77670202 - AluSq SINE Alu -5 308 1 552 306 84 37 chrX 99303938 99304374 -77669766 - L1MEc LINE L1 -3658 2557 2131 21 0 0 0 chrX 99304457 99304478 -77669662 + AT_rich Low_complexity Low_complexity 1 21 0 180 196 0 43 chrX 99305002 99305048 -77669092 + MIR SINE MIR 99 142 -66 21 0 0 0 chrX 99305075 99305096 -77669044 + AT_rich Low_complexity Low_complexity 1 21 0 3111 110 72 155 chrX 99305224 99306073 -77668067 + LTR12 LTR ERV1 57 714 0 385 243 99 0 chrX 99306369 99306480 -77667660 - MIR SINE MIR -80 182 61 2265 69 0 4 chrX 99307547 99307821 -77666319 + AluSg SINE Alu 22 294 -16 210 224 0 60 chrX 99307921 99307988 -77666152 + G-rich Low_complexity Low_complexity 1 63 0 478 205 45 9 chrX 99308369 99308481 -77665659 - L1MB3 LINE L1 -1 6182 6067 1390 163 25 11 chrX 99308370 99308647 -77665493 - L1MB4 LINE L1 0 6180 5900 237 158 53 116 chrX 99308680 99308775 -77665365 + L1ME LINE L1 5735 5823 -339 1865 156 0 32 chrX 99308834 99309142 -77664998 + AluJb SINE Alu 1 298 -14 25 31 0 0 chrX 99309582 99309614 -77664526 + AT_rich Low_complexity Low_complexity 1 32 0 637 86 9 57 chrX 99309765 99309870 -77664270 + HY3 scRNA scRNA 1 100 -1 204 40 0 0 chrX 99309870 99309895 -77664245 + (A)n Simple_repeat Simple_repeat 1 25 0 1508 150 100 25 chrX 99309902 99310182 -77663958 + AluJb SINE Alu 1 301 -11 2149 134 0 7 chrX 99310434 99310733 -77663407 - AluJb SINE Alu -15 297 1 446 17 0 0 chrX 99311232 99311290 -77662850 - L1PA3 LINE L1 -1 6154 6097 268 351 26 9 chrX 99311413 99311527 -77662613 + MIR SINE MIR 17 132 -76 180 367 50 0 chrX 99311737 99311797 -77662343 - MIR SINE MIR -6 256 194 201 219 109 16 chrX 99311808 99311872 -77662268 + MER5A DNA MER1_type 72 141 -48 444 202 50 0 chrX 99311873 99312140 -77662000 + (TTAAA)n Simple_repeat Simple_repeat 1 280 0 77 0 0 0 chrX 99312140 99312217 -77661923 + AT_rich Low_complexity Low_complexity 1 77 0 637 190 18 25 chrX 99312285 99312448 -77661692 - MER112 DNA MER1_type -98 162 1 1831 122 47 0 chrX 99314893 99315172 -77658968 + AluJb SINE Alu 1 292 -20 686 145 8 8 chrX 99315378 99315495 -77658645 + AluJb SINE Alu 23 139 -173 1393 110 15 0 chrX 99315495 99315695 -77658445 + AluJb SINE Alu 101 303 -9 2298 84 3 0 chrX 99315784 99316080 -77658060 - AluSx SINE Alu -15 297 1 30 0 0 0 chrX 99316511 99316541 -77657599 + AT_rich Low_complexity Low_complexity 1 30 0 2002 115 4 4 chrX 99316698 99316977 -77657163 - AluSx SINE Alu -33 279 1 242 160 20 60 chrX 99317582 99317632 -77656508 - MIR SINE MIR -186 76 29 1721 170 0 26 chrX 99317658 99317970 -77656170 - AluJb SINE Alu -8 304 1 23 33 0 0 chrX 99318662 99318692 -77655448 + AT_rich Low_complexity Low_complexity 1 30 0 1070 281 112 15 chrX 99318783 99319239 -77654901 - MARNA DNA Mariner -8 578 79 341 269 0 58 chrX 99319751 99319855 -77654285 + MER5A DNA MER1_type 91 188 -1 30 45 0 0 chrX 99322422 99322466 -77651674 + AT_rich Low_complexity Low_complexity 1 44 0 1181 114 5 0 chrX 99324093 99324286 -77649854 + L1MA8 LINE L1 6093 6286 -5 465 247 44 38 chrX 99324588 99324746 -77649394 - L2 LINE L2 0 3313 3155 32 26 0 0 chrX 99325681 99325720 -77648420 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 99325771 99325791 -77648349 + (GA)n Simple_repeat Simple_repeat 1 20 0 329 216 108 0 chrX 99325791 99325893 -77648247 + L1ME4a LINE L1 5974 6086 -35 2322 87 0 7 chrX 99327044 99327342 -77646798 - AluSx SINE Alu -16 296 1 204 309 90 58 chrX 99327928 99328116 -77646024 - L2 LINE L2 -741 2573 2380 2040 130 0 10 chrX 99328120 99328506 -77645634 - AluSx SINE Alu 0 312 1 1033 197 106 0 chrX 99328556 99328764 -77645376 - AluJb SINE Alu -82 230 1 371 302 22 22 chrX 99328765 99328904 -77645236 - L2 LINE L2 -961 2353 2215 315 0 0 0 chrX 99329142 99329177 -77644963 + (TAA)n Simple_repeat Simple_repeat 3 37 0 365 255 65 92 chrX 99329418 99329571 -77644569 - MIR3 SINE MIR -37 171 23 373 380 71 38 chrX 99331627 99331815 -77642325 - L2 LINE L2 -1 3271 3091 1987 133 0 29 chrX 99331815 99332160 -77641980 + L1MA3 LINE L1 5969 6303 -2 373 380 71 38 chrX 99332160 99332337 -77641803 - L2 LINE L2 -181 3091 2894 258 249 68 85 chrX 99332581 99332758 -77641382 - MER104 DNA Tc2 -5 175 2 250 77 26 0 chrX 99333613 99333652 -77640488 + MADE1 DNA Mariner 1 40 -40 8187 65 1 2 chrX 99334363 99335547 -77638593 + L1P1 LINE L1 4260 5442 -713 2137 90 7 10 chrX 99335696 99335985 -77638155 - AluSg SINE Alu -22 288 1 235 269 0 0 chrX 99337532 99337584 -77636556 + (TA)n Simple_repeat Simple_repeat 2 53 0 323 315 98 79 chrX 99338296 99338839 -77635301 + L1M2 LINE L1 595 1147 -5702 * 458 276 143 72 chrX 99338562 99339441 -77634699 - L1M2 LINE L1 -5601 1248 522 652 208 120 51 chrX 99389826 99389889 -77584251 - L1MD2 LINE L1 -217 6142 6085 599 185 0 0 chrX 99389889 99389997 -77584143 + L1MA2 LINE L1 6197 6304 0 652 208 120 51 chrX 99389997 99390149 -77583991 - L1MD2 LINE L1 -274 6085 5912 1405 195 10 24 chrX 99390150 99390448 -77583692 + AluJo SINE Alu 6 299 -13 2244 126 12 62 chrX 99390451 99390857 -77583283 - L1MD2 LINE L1 -432 5927 5542 654 129 129 36 chrX 99390862 99391001 -77583139 + L2 LINE L2 3161 3312 -1 651 193 34 0 chrX 99391376 99391495 -77582645 - L2 LINE L2 -1 3312 3190 1272 176 5 5 chrX 99391845 99392055 -77582085 - MER82 DNA MER2_type 0 653 444 441 279 70 41 chrX 99392087 99392259 -77581881 + MIR SINE MIR 2 178 -84 326 246 0 0 chrX 99392295 99392356 -77581784 - MER82 DNA MER2_type -570 83 23 225 0 0 0 chrX 99392616 99392641 -77581499 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chrX 99392739 99392760 -77581380 + AT_rich Low_complexity Low_complexity 1 21 0 1856 131 7 0 chrX 99392760 99393034 -77581106 - AluSx SINE Alu -36 276 1 241 333 0 0 chrX 99393038 99393098 -77581042 - MER5B DNA MER1_type -1 177 118 405 333 0 9 chrX 99393150 99393264 -77580876 + MER5B DNA MER1_type 49 161 -17 264 178 22 0 chrX 99393480 99393525 -77580615 + L2 LINE L2 3267 3312 -1 180 315 0 0 chrX 99393727 99393781 -77580359 + L2 LINE L2 3259 3312 -1 376 245 29 50 chrX 99394852 99394991 -77579149 - MER5B DNA MER1_type -39 139 4 999 168 152 15 chrX 99395020 99395217 -77578923 - MER58A DNA MER1_type 0 224 1 406 311 30 15 chrX 99395910 99396045 -77578095 + MIR3 SINE MIR 40 176 -32 875 214 11 11 chrX 99396453 99396631 -77577509 - MER5B DNA MER1_type 0 178 1 1590 226 121 27 chrX 99396952 99397608 -77576532 + L2 LINE L2 2372 3088 -225 2265 94 3 0 chrX 99397610 99397918 -77576222 + AluSx SINE Alu 1 309 -3 3327 124 0 41 chrX 99397918 99398457 -77575683 + L1MA7 LINE L1 5617 6133 -158 747 211 98 16 chrX 99398503 99398697 -77575443 + L2 LINE L2 3104 3313 0 1913 120 28 0 chrX 99398881 99399172 -77574968 + AluSq SINE Alu 1 299 -14 213 362 23 64 chrX 99399217 99399435 -77574705 + MIR SINE MIR 8 216 -46 21 0 0 0 chrX 99399448 99399469 -77574671 + AT_rich Low_complexity Low_complexity 1 21 0 185 245 75 0 chrX 99399644 99399697 -77574443 + L2 LINE L2 3251 3307 -6 196 271 0 0 chrX 99400388 99400436 -77573704 - L2 LINE L2 -2 3311 3264 209 207 0 17 chrX 99401398 99401456 -77572684 + CT-rich Low_complexity Low_complexity 1 57 0 225 339 0 0 chrX 99402397 99402456 -77571684 + L2 LINE L2 3214 3272 0 375 342 47 13 chrX 99402569 99402718 -77571422 - L2 LINE L2 -3 3269 3116 1398 149 0 0 chrX 99402729 99402944 -77571196 + AluJo SINE Alu 93 307 -5 270 247 169 0 chrX 99403031 99403120 -77571020 - L2 LINE L2 -225 3047 2944 1144 118 0 17 chrX 99403249 99403427 -77570713 + AluSg/x SINE Alu 135 309 -1 287 356 25 0 chrX 99403431 99403549 -77570591 + MER20B DNA MER1_type 55 175 -608 436 288 41 29 chrX 99405121 99405291 -77568849 + MER20B DNA MER1_type 1 172 -611 250 241 0 19 chrX 99406509 99406563 -77567577 + L2 LINE L2 3256 3308 -5 383 179 43 57 chrX 99407897 99408037 -77566103 - L1MC5 LINE L1 -22 7939 7802 556 349 76 43 chrX 99408936 99409438 -77564702 - L2 LINE L2 0 3272 2750 983 204 0 0 chrX 99409479 99409651 -77564489 + MER5A DNA MER1_type 18 189 0 775 235 49 0 chrX 99409661 99409823 -77564317 + MER5B DNA MER1_type 3 172 -6 274 297 293 0 chrX 99409910 99410169 -77563971 - L2 LINE L2 -668 2646 2312 630 218 0 32 chrX 99410521 99410539 -77563601 - L1MA10 LINE L1 -1 6333 6316 4879 195 30 27 chrX 99410539 99411740 -77562400 - L1ME1 LINE L1 -5 6161 4965 270 0 0 0 chrX 99411740 99411770 -77562370 + (TG)n Simple_repeat Simple_repeat 2 31 0 4879 195 30 27 chrX 99411770 99411873 -77562267 - L1ME1 LINE L1 -1201 4965 4864 396 0 0 0 chrX 99411873 99411917 -77562223 + (TA)n Simple_repeat Simple_repeat 1 44 0 4879 195 30 27 chrX 99411917 99412420 -77561720 - L1ME1 LINE L1 -1302 4864 4352 879 158 0 8 chrX 99412420 99412547 -77561593 + FLAM_C SINE Alu 1 126 -7 4879 195 30 27 chrX 99412547 99412625 -77561515 - L1ME1 LINE L1 -1814 4352 4276 33 25 0 0 chrX 99412703 99412743 -77561397 + AT_rich Low_complexity Low_complexity 1 40 0 2119 139 0 3 chrX 99412757 99413060 -77561080 - AluSx SINE Alu -10 302 1 1841 105 0 0 chrX 99413105 99413343 -77560797 - AluSq SINE Alu -75 238 1 1093 178 11 0 chrX 99413343 99413528 -77560612 - MER2 DNA MER2_type -158 187 1 207 350 7 7 chrX 99414657 99414794 -77559346 + CT-rich Low_complexity Low_complexity 2 138 0 869 107 0 74 chrX 99415297 99415446 -77558694 + FLAM_C SINE Alu 6 143 0 499 302 103 75 chrX 99415948 99416935 -77557205 - L2 LINE L2 -44 3228 2187 1857 171 24 24 chrX 99417501 99417840 -77556300 - MER58B DNA MER1_type -2 339 1 1995 146 7 7 chrX 99419488 99419834 -77554306 + AluJb SINE Alu 1 346 0 654 233 6 56 chrX 99420684 99420864 -77553276 - MER5B DNA MER1_type -1 177 7 634 206 110 114 chrX 99421084 99421232 -77552908 + MIR SINE MIR 24 172 -90 947 93 0 23 chrX 99421232 99421361 -77552779 - FLAM_C SINE Alu -7 126 1 634 206 110 114 chrX 99421361 99421440 -77552700 + MIR SINE MIR 172 250 -12 189 0 0 0 chrX 99422293 99422314 -77551826 + (TTTTA)n Simple_repeat Simple_repeat 4 24 0 1450 24 0 18 chrX 99422314 99422479 -77551661 - L1PA4 LINE L1 -13 6142 5981 2044 108 0 85 chrX 99422506 99422847 -77551293 + AluSx SINE Alu 1 312 0 816 153 16 0 chrX 99422856 99422980 -77551160 + BC200 scRNA scRNA 2 127 -73 408 40 0 0 chrX 99422981 99423031 -77551109 + (GA)n Simple_repeat Simple_repeat 1 50 0 2287 108 0 0 chrX 99423091 99423396 -77550744 + AluSx SINE Alu 1 305 -7 805 217 7 0 chrX 99423639 99423791 -77550349 - MER63A DNA MER1_type 0 210 58 1879 166 10 0 chrX 99423813 99424115 -77550025 + AluSx SINE Alu 1 305 -7 462 208 16 38 chrX 99424118 99424301 -77549839 + GA-rich Low_complexity Low_complexity 2 180 0 660 172 50 72 chrX 99424496 99424676 -77549464 + MER5B DNA MER1_type 2 177 -1 189 74 0 0 chrX 99425759 99425786 -77548354 + (CAGC)n Simple_repeat Simple_repeat 2 28 0 311 207 18 81 chrX 99426073 99426184 -77547956 + L2 LINE L2 3118 3221 -92 262 279 100 67 chrX 99426292 99426561 -77547579 - L2 LINE L2 -342 2972 2695 1893 136 0 0 chrX 99426569 99426833 -77547307 + AluSx SINE Alu 36 299 -13 809 162 0 22 chrX 99426851 99426958 -77547182 + FLAM_C SINE Alu 11 116 -196 279 0 0 0 chrX 99426958 99426989 -77547151 + (CTA)n Simple_repeat Simple_repeat 1 31 0 809 162 0 22 chrX 99426989 99427017 -77547123 + FLAM_C SINE Alu 116 143 -169 917 79 31 31 chrX 99428243 99428370 -77545770 + FLAM_C SINE Alu 4 130 -3 1208 184 27 40 chrX 99428399 99428622 -77545518 + MER58A DNA MER1_type 5 224 0 282 254 0 0 chrX 99428828 99428895 -77545245 + L2 LINE L2 2571 2637 -677 403 316 13 6 chrX 99429305 99429463 -77544677 - MER103 DNA DNA -7 159 1 2334 85 0 0 chrX 99429535 99429830 -77544310 - AluSx SINE Alu -17 295 1 1617 113 0 88 chrX 99431156 99431281 -77542859 + AluSx SINE Alu 35 169 -136 2299 113 7 0 chrX 99431281 99431582 -77542558 + AluSx SINE Alu 1 303 -9 1617 113 0 88 chrX 99431582 99431751 -77542389 + AluSx SINE Alu 169 305 0 305 241 163 64 chrX 99433496 99433637 -77540503 - L2 LINE L2 0 3313 3159 534 289 23 6 chrX 99434979 99435152 -77538988 + MIR SINE MIR 32 207 -55 2210 95 0 7 chrX 99435185 99435490 -77538650 - AluSq SINE Alu 0 303 1 4573 161 12 42 chrX 99435554 99436266 -77537874 - L1MB8 LINE L1 -6 6172 5491 2117 124 3 10 chrX 99436266 99436565 -77537575 - AluSx SINE Alu -15 297 1 4573 161 12 42 chrX 99436565 99436748 -77537392 - L1MB8 LINE L1 -687 5491 5304 1893 214 14 9 chrX 99436743 99437168 -77536972 - L1MB8 LINE L1 -1292 4854 4428 * 21754 106 3 4 chrX 99437193 99437935 -77536205 - L1PA8A LINE L1 0 6446 5704 2416 97 7 0 chrX 99437935 99438245 -77535895 - AluSx SINE Alu 0 312 1 21754 106 3 4 chrX 99438245 99438257 -77535883 - L1PA8A LINE L1 -742 5704 5693 189 0 0 0 chrX 99438257 99438278 -77535862 + (TTG)n Simple_repeat Simple_repeat 1 21 0 21754 106 3 4 chrX 99438278 99441335 -77532805 - L1PA8A LINE L1 -753 5693 2658 3635 201 9 66 chrX 99441435 99441470 -77532670 - L1PA12 LINE L1 -4293 2168 2133 2061 141 0 0 chrX 99441470 99441761 -77532379 - AluSx SINE Alu -21 291 1 3635 201 9 66 chrX 99441761 99441936 -77532204 - L1PA12 LINE L1 -4328 2133 1950 2351 105 3 0 chrX 99441936 99442240 -77531900 - AluSp SINE Alu -8 305 1 3635 201 9 66 chrX 99442240 99443353 -77530787 - L1PA12 LINE L1 -4511 1950 6 24 77 0 0 chrX 99443397 99443449 -77530691 + AT_rich Low_complexity Low_complexity 1 52 0 3345 208 77 90 chrX 99443449 99443555 -77530585 - L1MB8 LINE L1 -1718 4428 4322 2308 91 3 13 chrX 99443555 99443863 -77530277 + AluSx SINE Alu 1 305 -7 3345 208 77 90 chrX 99443863 99444038 -77530102 - L1MB8 LINE L1 -1824 4322 4146 243 0 0 0 chrX 99444038 99444065 -77530075 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3345 208 77 90 chrX 99444065 99444832 -77529308 - L1MB8 LINE L1 -2000 4146 3399 2235 122 6 3 chrX 99444832 99445143 -77528997 - AluSq SINE Alu -1 312 1 3345 208 77 90 chrX 99445143 99445456 -77528684 - L1MB8 LINE L1 -2747 3399 3083 1291 62 0 23 chrX 99445446 99445622 -77528518 - L1MA1 LINE L1 0 6302 6131 * 2733 77 6 9 chrX 99445627 99445977 -77528163 - L1PB1 LINE L1 -2 6149 5801 405 83 0 17 chrX 99446080 99446140 -77528000 - MER4A LTR ERV1 -605 59 1 1597 147 22 15 chrX 99446161 99446434 -77527706 - MER49 LTR ERV1 -645 278 4 2266 158 8 0 chrX 99446437 99446822 -77527318 - L1 LINE L1 -1345 5761 5374 964 195 81 14 chrX 99446821 99447031 -77527109 - L1 LINE L1 -6801 229 6 * 908 219 15 0 chrX 99447073 99447269 -77526871 - L1MD3 LINE L1 0 7995 7797 2254 109 0 0 chrX 99447635 99447928 -77526212 + AluSq SINE Alu 3 295 -18 4303 91 16 33 chrX 99448026 99448634 -77525506 - MER4A LTR ERV1 -2 598 1 637 269 89 47 chrX 99449162 99449721 -77524419 + L1ME4a LINE L1 5151 5741 -404 1587 289 46 5 chrX 99449799 99450215 -77523925 + LTR16A LTR ERVL 18 450 0 577 262 89 15 chrX 99450282 99450484 -77523656 + L1MEd LINE L1 8 224 -5895 450 268 26 39 chrX 99450549 99450702 -77523438 + L1MEd LINE L1 388 538 -5581 872 242 94 49 chrX 99450721 99450856 -77523284 + L1MEd LINE L1 598 726 -1764 2687 213 94 60 chrX 99450856 99451655 -77522485 + LTR1B LTR ERV1 1 826 0 872 242 94 49 chrX 99451655 99452257 -77521883 + L1MEd LINE L1 726 1630 -860 850 294 79 19 chrX 99452645 99453212 -77520928 + L1MEd LINE L1 2099 2699 -3430 358 273 65 32 chrX 99453283 99453499 -77520641 + L1ME4a LINE L1 5874 6096 -25 1768 195 93 30 chrX 99453502 99453932 -77520208 - MSTB2 LTR MaLR 0 457 1 599 348 55 46 chrX 99454005 99454630 -77519510 + L2 LINE L2 2606 3313 0 207 114 0 0 chrX 99454631 99454666 -77519474 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 2714 170 17 73 chrX 99455231 99455282 -77518858 + MLT2B3 LTR ERVL 1 53 -501 2393 84 3 0 chrX 99455282 99455579 -77518561 + AluSc SINE Alu 1 298 -11 2714 170 17 73 chrX 99455579 99456114 -77518026 + MLT2B3 LTR ERVL 53 554 0 1420 97 0 0 chrX 99457319 99457494 -77516646 - AluSq SINE Alu -138 175 1 213 175 0 0 chrX 99459451 99459491 -77514649 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 362 196 286 8 chrX 99462143 99462276 -77511864 - MIR SINE MIR -7 255 86 2945 130 49 40 chrX 99462638 99462973 -77511167 + L1MB5 LINE L1 5609 5952 -222 2135 101 10 0 chrX 99462973 99463279 -77510861 - AluY SINE Alu -2 309 1 2945 130 49 40 chrX 99463279 99463495 -77510645 + L1MB5 LINE L1 5952 6165 -9 214 333 56 0 chrX 99464770 99464824 -77509316 + MIR SINE MIR 19 75 -187 1851 154 0 24 chrX 99464839 99465137 -77509003 - AluJo SINE Alu -21 291 1 2216 226 45 28 chrX 99465154 99465685 -77508455 - MLT1F LTR MaLR -2 540 1 1403 251 76 13 chrX 99466927 99467321 -77506819 + L2 LINE L2 32 450 -2864 1779 188 38 12 chrX 99467358 99467757 -77506383 + L1MA9 LINE L1 5865 6273 -39 534 311 17 6 chrX 99467762 99467939 -77506201 + L2 LINE L2 535 713 -2601 1884 151 7 0 chrX 99467945 99468248 -77505892 + AluJb SINE Alu 5 309 0 881 281 29 11 chrX 99468269 99468543 -77505597 + L2 LINE L2 2991 3269 -44 726 65 0 0 chrX 99468612 99468704 -77505436 + LTR14 LTR ERVK 1 92 -456 2048 160 0 0 chrX 99468824 99469131 -77505009 + AluSx SINE Alu 1 307 -5 285 133 0 0 chrX 99469321 99469366 -77504774 + L2 LINE L2 3269 3313 0 449 234 81 14 chrX 99469366 99469588 -77504552 + L1M4 LINE L1 3815 4063 -2083 1596 103 44 18 chrX 99469609 99469882 -77504258 - L1MA1 LINE L1 -253 6049 5770 249 248 109 0 chrX 99469928 99470029 -77504111 + L1M4 LINE L1 4099 4210 -1936 1814 287 92 74 chrX 99470047 99470299 -77503841 - L2 LINE L2 -351 2963 2717 2077 117 35 0 chrX 99470299 99470581 -77503559 - AluSx SINE Alu -20 292 1 1814 287 92 74 chrX 99470581 99470995 -77503145 - L2 LINE L2 -597 2717 2312 2277 52 0 0 chrX 99470995 99471267 -77502873 + AluY SINE Alu 1 272 -39 1814 287 92 74 chrX 99471267 99471556 -77502584 - L2 LINE L2 -1002 2312 1986 2106 117 40 0 chrX 99471556 99471854 -77502286 + AluSx SINE Alu 1 310 -2 1814 287 92 74 chrX 99471854 99471883 -77502257 - L2 LINE L2 -1328 1986 1959 457 224 13 103 chrX 99471942 99472061 -77502079 - MER20B DNA MER1_type -588 195 92 1864 163 0 17 chrX 99472061 99472362 -77501778 + AluJo SINE Alu 1 296 -16 457 224 13 103 chrX 99472362 99472398 -77501742 - MER20B DNA MER1_type -691 92 54 201 241 139 13 chrX 99472421 99472500 -77501640 + L2 LINE L2 3225 3313 0 * 550 309 83 27 chrX 99472499 99472800 -77501340 + L2 LINE L2 1649 1966 -1348 1951 130 35 0 chrX 99473592 99473877 -77500263 + AluSx SINE Alu 1 295 -17 263 77 26 0 chrX 99474561 99474600 -77499540 - MADE1 DNA Mariner -40 40 1 280 257 67 84 chrX 99475455 99475634 -77498506 + MER104 DNA Tc2 2 177 -3 378 380 71 38 chrX 99475876 99476053 -77498087 + L2 LINE L2 2894 3064 -208 2009 133 0 29 chrX 99476053 99476398 -77497742 - L1MA3 LINE L1 -2 6303 5969 378 380 71 38 chrX 99476398 99476586 -77497554 + L2 LINE L2 3064 3271 -1 361 255 65 92 chrX 99478642 99478795 -77495345 + MIR3 SINE MIR 23 171 -37 315 0 0 0 chrX 99479036 99479071 -77495069 + (TTA)n Simple_repeat Simple_repeat 3 37 0 369 302 22 22 chrX 99479309 99479448 -77494692 + L2 LINE L2 2215 2353 -961 1027 197 106 0 chrX 99479449 99479657 -77494483 + AluJb SINE Alu 1 230 -82 2027 122 0 11 chrX 99479707 99480094 -77494046 + AluSx SINE Alu 1 384 0 197 296 87 71 chrX 99480101 99480297 -77493843 + L2 LINE L2 2375 2573 -741 235 211 0 0 chrX 99480325 99480382 -77493758 - L1P LINE L1 -791 5375 5319 2313 87 0 7 chrX 99480883 99481181 -77492959 + AluSx SINE Alu 1 296 -16 361 216 108 0 chrX 99482332 99482434 -77491706 - L1ME4a LINE L1 -35 6086 5974 180 0 0 0 chrX 99482434 99482454 -77491686 + (TC)n Simple_repeat Simple_repeat 1 20 0 32 26 0 0 chrX 99482505 99482544 -77491596 + AT_rich Low_complexity Low_complexity 1 39 0 472 247 44 38 chrX 99483479 99483637 -77490503 + L2 LINE L2 3155 3313 0 1200 114 5 0 chrX 99483939 99484132 -77490008 - L1MA8 LINE L1 -5 6286 6093 30 45 0 0 chrX 99485759 99485803 -77488337 + AT_rich Low_complexity Low_complexity 1 44 0 341 269 0 58 chrX 99488370 99488474 -77485666 - MER5A DNA MER1_type -1 188 91 1200 281 112 15 chrX 99488986 99489442 -77484698 + MARNA DNA Mariner 79 578 -8 23 33 0 0 chrX 99489533 99489563 -77484577 + AT_rich Low_complexity Low_complexity 1 30 0 1702 170 0 26 chrX 99490255 99490567 -77483573 + AluJb SINE Alu 1 304 -8 239 160 20 60 chrX 99490593 99490643 -77483497 + MIR SINE MIR 29 76 -186 1984 112 4 4 chrX 99491248 99491524 -77482616 + AluSx SINE Alu 1 276 -36 30 0 0 0 chrX 99491684 99491714 -77482426 + AT_rich Low_complexity Low_complexity 1 30 0 2293 84 3 0 chrX 99492145 99492441 -77481699 + AluSx SINE Alu 1 297 -15 1402 105 15 0 chrX 99492530 99492730 -77481410 - AluJb SINE Alu -9 303 101 679 145 8 8 chrX 99492730 99492847 -77481293 - AluJb SINE Alu -173 139 23 1835 122 47 0 chrX 99493053 99493332 -77480808 - AluJb SINE Alu -20 292 1 684 190 18 25 chrX 99495777 99495940 -77478200 + MER112 DNA MER1_type 1 162 -98 77 0 0 0 chrX 99496008 99496085 -77478055 + AT_rich Low_complexity Low_complexity 1 77 0 444 205 41 0 chrX 99496085 99496256 -77477884 + (TTTAA)n Simple_repeat Simple_repeat 1 178 0 41 0 0 0 chrX 99496256 99496297 -77477843 + AT_rich Low_complexity Low_complexity 1 41 0 195 219 109 16 chrX 99496297 99496361 -77477779 - MER5A DNA MER1_type -48 141 72 181 367 50 0 chrX 99496372 99496432 -77477708 + MIR SINE MIR 194 256 -6 264 351 26 9 chrX 99496642 99496756 -77477384 - MIR SINE MIR -76 132 17 450 17 0 0 chrX 99496879 99496937 -77477203 + L1PA3 LINE L1 6097 6154 -1 2131 134 0 7 chrX 99497436 99497735 -77476405 + AluJb SINE Alu 1 297 -15 1487 150 100 25 chrX 99497988 99498268 -77475872 - AluJb SINE Alu -11 301 1 204 40 0 0 chrX 99498275 99498300 -77475840 + (T)n Simple_repeat Simple_repeat 1 25 0 636 86 9 57 chrX 99498300 99498405 -77475735 - HY3 scRNA scRNA -1 100 1 25 31 0 0 chrX 99498556 99498588 -77475552 + AT_rich Low_complexity Low_complexity 1 32 0 1840 156 0 32 chrX 99499028 99499336 -77474804 - AluJb SINE Alu -14 298 1 235 168 53 116 chrX 99499395 99499490 -77474650 - L1ME LINE L1 -341 5823 5735 1411 163 25 11 chrX 99499523 99499800 -77474340 + L1MB4 LINE L1 5900 6180 0 210 224 0 60 chrX 99500182 99500249 -77473891 + C-rich Low_complexity Low_complexity 1 63 0 2256 69 0 4 chrX 99500349 99500623 -77473517 - AluSg SINE Alu -16 294 22 385 243 99 0 chrX 99501690 99501801 -77472339 + MIR SINE MIR 61 182 -80 3111 110 72 155 chrX 99502097 99502946 -77471194 - LTR12 LTR ERV1 0 2429 57 21 0 0 0 chrX 99503074 99503095 -77471045 + AT_rich Low_complexity Low_complexity 1 21 0 180 196 0 43 chrX 99503122 99503168 -77470972 - MIR SINE MIR -66 142 99 21 0 0 0 chrX 99503692 99503713 -77470427 + AT_rich Low_complexity Low_complexity 1 21 0 552 306 84 37 chrX 99503796 99504232 -77469908 + L1MEc LINE L1 2131 2557 -3658 2074 107 3 58 chrX 99504232 99504558 -77469582 + AluSq SINE Alu 1 308 -5 552 306 84 37 chrX 99504558 99504654 -77469486 + L1MEc LINE L1 2557 2647 -3568 27 62 0 0 chrX 99505092 99505140 -77469000 + AT_rich Low_complexity Low_complexity 1 48 0 229 360 30 10 chrX 99505311 99505411 -77468729 + MARNA DNA Mariner 48 149 -437 430 192 92 54 chrX 99505418 99505548 -77468592 + HsTC2 DNA Tc2 4 138 -1760 1066 252 41 0 chrX 99505549 99505839 -77468301 + HsTC2 DNA Tc2 1262 1563 -335 2148 250 30 5 chrX 99505903 99506502 -77467638 + HAL1 LINE L1 1100 1713 -794 1090 248 50 36 chrX 99506558 99506978 -77467162 + HAL1 LINE L1 1813 2238 -269 891 201 30 80 chrX 99507378 99507558 -77466582 + L1M4 LINE L1 4567 4731 -1415 2193 92 0 0 chrX 99507558 99507862 -77466278 - L1MA1 LINE L1 0 6302 5999 891 201 30 80 chrX 99507862 99507944 -77466196 + L1M4 LINE L1 4731 4816 -1330 26 0 0 0 chrX 99507953 99507979 -77466161 + AT_rich Low_complexity Low_complexity 1 26 0 351 0 0 0 chrX 99508001 99508040 -77466100 + (TA)n Simple_repeat Simple_repeat 1 39 0 1285 174 33 33 chrX 99508117 99508359 -77465781 - AluJo SINE Alu -21 291 50 1595 186 32 57 chrX 99508360 99508479 -77465661 - Looper DNA T2_type -598 960 840 2192 115 0 3 chrX 99508479 99508774 -77465366 + AluSq SINE Alu 1 294 -19 1595 186 32 57 chrX 99508774 99509095 -77465045 - Looper DNA T2_type -718 840 531 1538 255 90 29 chrX 99509111 99509766 -77464374 + L1ME LINE L1 4370 5064 -1082 3749 170 41 66 chrX 99509774 99510441 -77463699 + L1MC4a LINE L1 6863 7505 -303 2269 164 139 22 chrX 99510441 99510893 -77463247 - MLT1D LTR MaLR 0 505 1 3749 170 41 66 chrX 99510893 99511104 -77463036 + L1MC4a LINE L1 7505 7720 -88 824 169 61 7 chrX 99511105 99511253 -77462887 + FRAM SINE Alu 1 153 -23 502 204 0 0 chrX 99511254 99511352 -77462788 + L1MC4 LINE L1 7942 8039 -3 788 266 11 44 chrX 99511380 99511654 -77462486 + L1ME LINE L1 5429 5693 -477 996 200 0 0 chrX 99512524 99512689 -77461451 - AluJo SINE Alu -14 298 134 4171 182 11 14 chrX 99512707 99513436 -77460704 + L1MB5 LINE L1 10 736 -6829 229 216 0 39 chrX 99513423 99513474 -77460666 + L1MB5 LINE L1 2928 2976 -4520 * 4416 178 49 28 chrX 99513443 99514531 -77459609 + L1MB5 LINE L1 3825 4935 -2630 * 7330 124 15 4 chrX 99514526 99516653 -77457487 + L1MA2 LINE L1 5573 7723 0 923 130 0 0 chrX 99516713 99516836 -77457304 - AluJo SINE Alu -178 124 2 2522 50 0 3 chrX 99516872 99517172 -77456968 + AluY SINE Alu 1 299 -12 252 295 42 32 chrX 99517175 99517270 -77456870 + L3b LINE CR1 1286 1381 -202 182 228 35 0 chrX 99517390 99517447 -77456693 + MIR SINE MIR 84 142 -120 1103 188 10 0 chrX 99517669 99517876 -77456264 + L1MB5 LINE L1 5116 5324 -2241 5178 137 11 47 chrX 99517877 99518910 -77455230 + L1MB5 LINE L1 6589 7585 -8 1816 185 106 43 chrX 99519349 99519813 -77454327 + L1ME3A LINE L1 5678 6170 0 1431 262 60 83 chrX 99519830 99520098 -77454042 + L2 LINE L2 1701 1974 -1340 405 0 0 0 chrX 99520098 99520143 -77453997 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1431 262 60 83 chrX 99520143 99520645 -77453495 + L2 LINE L2 1974 2453 -861 2117 106 42 0 chrX 99520664 99520948 -77453192 + AluSx SINE Alu 1 296 -16 1098 255 98 46 chrX 99521129 99521498 -77452642 + LTR16A LTR ERVL 57 444 -6 336 94 0 0 chrX 99521897 99521950 -77452190 + (CA)n Simple_repeat Simple_repeat 2 54 0 1023 164 30 35 chrX 99522069 99522300 -77451840 - L1M4 LINE L1 -1085 5061 4832 444 280 29 41 chrX 99522511 99522754 -77451386 - L1ME4a LINE L1 -225 5896 5657 267 325 12 0 chrX 99522754 99522834 -77451306 + Charlie8 DNA MER1_type 1 81 -2336 311 346 20 0 chrX 99523110 99523211 -77450929 + MIR SINE MIR 30 132 -76 281 338 126 20 chrX 99523445 99523596 -77450544 - L2 LINE L2 -5 3267 3101 208 225 0 0 chrX 99523718 99523758 -77450382 + (TG)n Simple_repeat Simple_repeat 1 40 0 780 296 67 72 chrX 99526123 99526966 -77447174 + L2 LINE L2 2447 3271 -1 886 259 148 44 chrX 99527464 99527693 -77446447 + L1MC4a LINE L1 5121 5325 -839 2266 113 0 13 chrX 99527693 99528002 -77446138 + AluSq SINE Alu 1 305 -8 886 259 148 44 chrX 99528002 99528219 -77445921 + L1MC4a LINE L1 5325 5518 -646 1430 208 12 0 chrX 99528219 99528474 -77445666 + MIR SINE MIR 5 262 0 886 259 148 44 chrX 99528474 99528699 -77445441 + L1MC4a LINE L1 5518 5881 -283 245 98 24 0 chrX 99528921 99528962 -77445178 + (TG)n Simple_repeat Simple_repeat 1 42 0 1344 282 22 64 chrX 99528991 99529596 -77444544 + L2 LINE L2 2730 3311 -2 22937 78 10 3 chrX 99530069 99533980 -77440160 + L1PA7 LINE L1 2207 6141 -13 1962 164 3 0 chrX 99534011 99534321 -77439819 + AluJb SINE Alu 1 311 -1 432 0 0 0 chrX 99534739 99534787 -77439353 + (TG)n Simple_repeat Simple_repeat 2 49 0 436 266 56 49 chrX 99535227 99535370 -77438770 - MER5A DNA MER1_type -43 146 3 680 195 149 26 chrX 99535392 99535546 -77438594 - MER5A DNA MER1_type -6 183 11 1635 221 85 55 chrX 99535573 99536025 -77438115 + MLT2B1 LTR ERVL 1 469 -51 2409 80 0 25 chrX 99536025 99536339 -77437801 - AluY SINE Alu -5 306 1 1635 221 85 55 chrX 99536339 99536357 -77437783 + MLT2B1 LTR ERVL 469 485 -35 282 143 0 0 chrX 99536402 99536451 -77437689 + MLT2B1 LTR ERVL 467 515 0 496 285 70 6 chrX 99536624 99536796 -77437344 - MIR SINE MIR 0 262 80 200 119 0 24 chrX 99538655 99538697 -77435443 + (TTTTA)n Simple_repeat Simple_repeat 4 44 0 395 19 19 0 chrX 99539636 99539688 -77434452 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 43956 32 22 2 chrX 99539688 99545701 -77428439 - L1PA2 LINE L1 -18 6137 2 2249 112 3 0 chrX 99545706 99546002 -77428138 - AluSq SINE Alu -16 297 1 2636 161 16 9 chrX 99546047 99546470 -77427670 + MSTB LTR MaLR 1 426 0 191 327 0 0 chrX 99547199 99547254 -77426886 - MIR3 SINE MIR -11 197 143 2047 144 10 7 chrX 99547527 99547832 -77426308 + AluSx SINE Alu 1 306 -6 227 69 0 0 chrX 99548132 99548161 -77425979 - MER91B DNA MER1_type -126 64 36 357 272 26 26 chrX 99548174 99548288 -77425852 - MIR3 SINE MIR -37 171 58 208 339 48 0 chrX 99548428 99548490 -77425650 - MER91A DNA MER1_type -131 65 1 675 251 21 48 chrX 99549501 99549688 -77424452 - MER5A DNA MER1_type -1 188 7 2191 125 0 16 chrX 99549695 99550024 -77424116 + AluSx SINE Alu 1 312 0 437 215 6 19 chrX 99551228 99551386 -77422754 + CT-rich Low_complexity Low_complexity 4 159 0 2870 228 26 15 chrX 99551387 99552105 -77422035 - L1M4 LINE L1 -2130 4016 3291 1250 276 72 52 chrX 99552142 99552873 -77421267 - L2 LINE L2 -3 3310 2553 241 320 26 0 chrX 99553273 99553351 -77420789 + L3b LINE CR1 1365 1444 -139 509 298 115 72 chrX 99554615 99555058 -77419082 + MLT1K LTR MaLR 124 585 -3 2051 270 64 53 chrX 99555301 99555964 -77418176 - L2 LINE L2 0 3313 2659 202 0 29 57 chrX 99555964 99555999 -77418141 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2062 125 0 0 chrX 99556001 99556280 -77417860 - AluSx SINE Alu -33 279 1 2051 270 64 53 chrX 99556280 99556621 -77417519 - L2 LINE L2 -654 2659 2294 1497 140 8 4 chrX 99556823 99557059 -77417081 + AluJo SINE Alu 64 300 -12 306 337 0 0 chrX 99559036 99559134 -77415006 + L1MC4 LINE L1 6614 6711 -1331 282 281 0 0 chrX 99559703 99559760 -77414380 + L2 LINE L2 3208 3264 -8 472 226 165 24 chrX 99560789 99560953 -77413187 + MIR SINE MIR 58 244 -18 222 118 0 0 chrX 99560953 99560987 -77413153 + (CTA)n Simple_repeat Simple_repeat 2 35 0 2033 132 0 22 chrX 99561926 99562244 -77411896 + AluSq SINE Alu 2 312 -1 482 214 107 9 chrX 99562475 99562587 -77411553 - MER45 DNA AcHobo -55 123 1 21 36 0 0 chrX 99562722 99562750 -77411390 + AT_rich Low_complexity Low_complexity 1 28 0 521 258 8 0 chrX 99563044 99563172 -77410968 + L1MC5 LINE L1 6968 7096 -865 695 287 162 0 chrX 99563197 99563413 -77410727 - MIR SINE MIR -10 252 2 691 279 63 119 chrX 99563462 99564093 -77410047 + L1MC4 LINE L1 7135 7730 -312 2083 129 3 0 chrX 99564208 99564502 -77409638 - AluJb SINE Alu -17 295 1 1497 240 94 41 chrX 99564579 99565038 -77409102 + LTR16C LTR ERVL 1 483 -8 201 342 100 54 chrX 99565181 99565590 -77408550 + L2 LINE L2 557 984 -2330 1611 197 92 160 chrX 99565898 99566866 -77407274 - MER4D LTR ERV1 0 903 2 2908 290 131 46 chrX 99567009 99568548 -77405592 - L2 LINE L2 0 3272 1529 1780 244 38 63 chrX 99568548 99569069 -77405071 + MLT1J LTR MaLR 1 508 -3 2908 290 131 46 chrX 99569069 99569328 -77404812 - L2 LINE L2 -1743 1529 1293 200 173 39 39 chrX 99569742 99569794 -77404346 + L2 LINE L2 3004 3055 -217 212 239 0 60 chrX 99570183 99570250 -77403890 + MER5A DNA MER1_type 11 73 -116 969 228 73 8 chrX 99570252 99570304 -77403836 + L1ME3A LINE L1 5670 5717 -453 180 0 0 0 chrX 99570304 99570324 -77403816 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 969 228 73 8 chrX 99570324 99570530 -77403610 + L1ME3A LINE L1 5717 5945 -225 307 302 112 9 chrX 99570829 99570945 -77403195 + MER5A DNA MER1_type 62 189 0 2187 149 30 63 chrX 99571333 99571730 -77402410 - MLT1B LTR MaLR -6 384 1 398 274 81 51 chrX 99572562 99572759 -77401381 - MIR SINE MIR -51 211 9 1116 343 51 44 chrX 99573169 99574453 -77399687 + L2 LINE L2 900 2191 -1123 663 327 67 74 chrX 99575075 99575361 -77398779 + L2 LINE L2 2232 2519 -753 1989 132 62 57 chrX 99575361 99575733 -77398407 - THE1C LTR MaLR 0 375 2 663 327 67 74 chrX 99575733 99576005 -77398135 + L2 LINE L2 2519 2791 -481 2264 139 3 29 chrX 99576005 99576351 -77397789 + MER1B DNA MER1_type 1 337 0 663 327 67 74 chrX 99576351 99576829 -77397311 + L2 LINE L2 2791 3265 -7 2433 109 54 14 chrX 99576829 99577179 -77396961 - THE1B LTR MaLR 0 364 1 310 134 30 0 chrX 99577247 99577314 -77396826 + GA-rich Low_complexity Low_complexity 2 70 0 276 292 9 71 chrX 99578349 99578462 -77395678 + MIR SINE MIR 45 150 -112 252 245 94 28 chrX 99578505 99578611 -77395529 - LTR67 LTR ERVL -2 555 443 218 222 159 0 chrX 99579058 99579121 -77395019 - MIR SINE MIR -101 107 35 972 243 37 8 chrX 99579129 99579372 -77394768 - MIR SINE MIR -4 258 9 290 240 0 0 chrX 99579372 99579422 -77394718 - MIR SINE MIR -211 51 2 2487 137 18 21 chrX 99579818 99580205 -77393935 - MLT1B LTR MaLR -4 386 1 460 283 55 71 chrX 99580660 99580971 -77393169 - L2 LINE L2 -2 3270 2965 283 289 40 0 chrX 99581006 99581082 -77393058 + MER91C DNA MER1_type 25 103 -37 352 318 45 40 chrX 99581589 99581765 -77392375 - MIR SINE MIR -80 182 6 1686 150 57 14 chrX 99583719 99583875 -77390265 - AluJb SINE Alu -20 292 117 216 86 0 0 chrX 99583875 99583910 -77390230 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1686 150 57 14 chrX 99583910 99584033 -77390107 - AluJb SINE Alu -195 117 1 292 121 0 6 chrX 99584074 99584155 -77389985 - MER5A DNA MER1_type 0 189 57 6868 188 83 16 chrX 99584156 99585610 -77388530 - MER52A LTR ERV1 0 1755 204 263 161 71 0 chrX 99586339 99586395 -77387745 - MER5A DNA MER1_type -129 60 1 684 178 79 20 chrX 99586723 99586875 -77387265 - MER5A DNA MER1_type -3 186 26 440 264 236 0 chrX 99587158 99587340 -77386800 - MIR SINE MIR -6 256 32 400 240 41 50 chrX 99588257 99588378 -77385762 + MIR SINE MIR 29 148 -114 654 209 15 22 chrX 99588633 99588767 -77385373 + MER94 DNA DNA 2 134 0 414 270 24 0 chrX 99590907 99591033 -77383107 - L1ME4a LINE L1 -66 6055 5927 828 184 58 144 chrX 99591033 99591360 -77382780 + HsTC2 DNA Tc2 1 299 -1599 * 1345 228 58 75 chrX 99591353 99591769 -77382371 + HsTC2 DNA Tc2 482 890 -1008 389 213 65 0 chrX 99591991 99592099 -77382041 - L1ME4a LINE L1 -199 5922 5808 282 246 15 0 chrX 99592103 99592168 -77381972 - L1ME4a LINE L1 -535 5586 5521 1153 277 60 18 chrX 99592502 99592903 -77381237 + LTR16C LTR ERVL 72 489 -2 360 0 0 0 chrX 99593298 99593338 -77380802 + (CA)n Simple_repeat Simple_repeat 2 41 0 2590 150 29 9 chrX 99594225 99594645 -77379495 - MSTA LTR MaLR 0 428 1 408 352 32 8 chrX 99594760 99594885 -77379255 + L2 LINE L2 3127 3254 -18 1282 291 67 24 chrX 99595027 99595630 -77378510 - L2 LINE L2 0 3313 2690 205 287 115 23 chrX 99598111 99598198 -77375942 + MIR SINE MIR 98 192 -70 873 246 39 5 chrX 99598274 99598481 -77375659 - MER58C DNA MER1_type -1 214 1 3242 170 57 27 chrX 99598601 99599265 -77374875 - L1MB7 LINE L1 -16 7587 6904 4867 148 6 9 chrX 99599285 99600090 -77374050 + L1PB4 LINE L1 5327 6129 -27 24 24 0 24 chrX 99600126 99600143 -77373997 + AT_rich Low_complexity Low_complexity 1 17 -24 1911 131 25 0 chrX 99600143 99600425 -77373715 - AluSx SINE Alu -23 289 1 24 24 0 24 chrX 99600425 99600449 -77373691 + AT_rich Low_complexity Low_complexity 17 41 0 6000 188 37 21 chrX 99600449 99600929 -77373211 - L1MB7 LINE L1 -702 6895 6424 2283 194 34 67 chrX 99600929 99601465 -77372675 + MLT2B1 LTR ERVL 1 518 -2 6000 188 37 21 chrX 99601465 99602417 -77371723 - L1MB7 LINE L1 -1173 6424 5437 1179 179 44 0 chrX 99602418 99602647 -77371493 - L1MA10 LINE L1 -2 6332 6094 4158 238 55 24 chrX 99602647 99605424 -77368716 - L1MB7 LINE L1 -2837 4728 2049 2515 160 14 27 chrX 99605541 99605979 -77368161 - MER73 LTR ERVL 0 644 213 3249 209 38 16 chrX 99605981 99607055 -77367085 - L1M4c LINE L1 -4701 1945 842 641 251 51 20 chrX 99607050 99607245 -77366895 - L1M4c LINE L1 -6341 201 1 * 432 240 124 0 chrX 99607339 99607468 -77366672 + MIR SINE MIR 46 190 -72 291 345 59 34 chrX 99607999 99608118 -77366022 + L2 LINE L2 3142 3263 -9 2315 108 0 0 chrX 99609649 99609954 -77364186 - AluSx SINE Alu -7 305 1 1237 170 5 0 chrX 99610029 99610217 -77363923 - MER5A DNA MER1_type 0 189 1 1377 161 43 40 chrX 99611336 99611385 -77362755 + MER33 DNA MER1_type 1 48 -2537 3053 88 85 24 chrX 99611385 99611842 -77362298 + MER31A LTR ERV1 1 485 0 1377 161 43 40 chrX 99611842 99612115 -77362025 + MER33 DNA MER1_type 48 324 0 280 324 0 29 chrX 99612397 99612502 -77361638 - MLT1K LTR MaLR -255 333 232 425 299 35 0 chrX 99612877 99613021 -77361119 + MIR SINE MIR 56 204 -58 462 235 0 0 chrX 99613090 99613188 -77360952 + MER63A DNA MER1_type 1 98 0 2399 140 51 95 chrX 99613188 99613329 -77360811 - MER51A LTR ERV1 0 634 488 2147 104 0 0 chrX 99613329 99613609 -77360531 + AluSx SINE Alu 1 280 -32 1021 116 12 6 chrX 99613611 99613784 -77360356 + (GAAAA)n Simple_repeat Simple_repeat 2 175 0 2399 140 51 95 chrX 99613784 99614574 -77359566 - MER51A LTR ERV1 -147 487 1 462 219 0 0 chrX 99614574 99614655 -77359485 + MER63A DNA MER1_type 95 175 -35 1686 152 7 4 chrX 99615062 99615331 -77358809 + L1MD2 LINE L1 5442 5711 -531 1556 170 61 21 chrX 99615351 99615681 -77358459 + MLT1A1 LTR MaLR 23 365 0 3317 177 27 10 chrX 99615685 99616307 -77357833 + L1MD2 LINE L1 5725 6357 -2 180 111 0 0 chrX 99616326 99616353 -77357787 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 657 233 209 5 chrX 99616818 99617024 -77357116 + MIR SINE MIR 15 262 0 1224 186 0 0 chrX 99617613 99617801 -77356339 + MER5A DNA MER1_type 1 188 -1 754 234 13 0 chrX 99617809 99617963 -77356177 + MIR SINE MIR 12 167 -95 271 257 82 60 chrX 99617895 99618078 -77356062 + L2 LINE L2 1927 2113 -1201 * 6774 58 4 1 chrX 99618092 99618927 -77355213 - L1PA7 LINE L1 -5 6149 5313 2053 272 69 31 chrX 99618927 99620070 -77354070 + L2 LINE L2 2119 3313 0 181 200 22 22 chrX 99620197 99620242 -77353898 + L2 LINE L2 3228 3272 0 221 226 85 94 chrX 99620559 99620588 -77353552 - MER5A DNA MER1_type -77 112 84 561 221 18 18 chrX 99620588 99620701 -77353439 - MER81 DNA DNA -1 113 1 221 226 85 94 chrX 99620701 99620777 -77353363 - MER5A DNA MER1_type -105 84 8 3776 157 41 20 chrX 99621465 99622101 -77352039 + L1MB4 LINE L1 5496 6148 -32 1868 155 10 3 chrX 99622101 99622397 -77351743 + AluJb SINE Alu 1 298 -14 3776 157 41 20 chrX 99622397 99622421 -77351719 + L1MB4 LINE L1 6148 6170 -10 193 254 34 17 chrX 99622609 99622668 -77351472 - MER5A DNA MER1_type -117 72 13 224 333 22 58 chrX 99623318 99623456 -77350684 + L2 LINE L2 2925 3057 -215 254 275 38 12 chrX 99623727 99623807 -77350333 - MIR SINE MIR -170 92 11 515 339 58 6 chrX 99623809 99623983 -77350157 - MER5A DNA MER1_type 0 189 7 609 186 13 77 chrX 99624066 99624222 -77349918 - L1M4 LINE L1 -1233 4913 4768 930 183 36 51 chrX 99624234 99624479 -77349661 - L1MB7 LINE L1 -20 6662 6434 * 17014 154 12 14 chrX 99624467 99627582 -77346558 - L1MA3 LINE L1 0 7724 4619 2448 74 3 0 chrX 99627582 99627878 -77346262 - AluSp SINE Alu -16 297 1 17014 154 12 14 chrX 99627878 99629099 -77345041 - L1MA3 LINE L1 -3105 4619 3397 544 76 25 0 chrX 99629099 99629178 -77344962 - Alu SINE Alu -2 308 228 1628 106 82 0 chrX 99629199 99629444 -77344696 + L1P LINE L1 2488 2752 -3394 1660 77 0 10 chrX 99629444 99629634 -77344506 + L1PA8 LINE L1 5960 6166 -6 1051 128 44 6 chrX 99629637 99629817 -77344323 + MER41A-int LTR ERV1 2718 2904 -3042 3497 90 4 15 chrX 99629817 99630338 -77343802 + MER41A-int LTR ERV1 3290 3804 -2142 5078 94 39 3 chrX 99630344 99631059 -77343081 + MER41A-int LTR ERV1 5206 5946 0 2468 150 102 35 chrX 99631059 99631578 -77342562 + MER41A LTR ERV1 1 554 0 1323 78 26 0 chrX 99631579 99631770 -77342370 - MSTA-int LTR MaLR -1455 196 1 2312 123 158 11 chrX 99631770 99632143 -77341997 - MSTA LTR MaLR 0 428 1 2531 176 39 30 chrX 99632143 99632754 -77341386 - L1MB7 LINE L1 -401 6281 5677 2022 130 10 3 chrX 99632754 99633047 -77341093 + AluSq SINE Alu 1 295 -18 2531 176 39 30 chrX 99633047 99633131 -77341009 - L1MB7 LINE L1 -1005 5677 5585 2063 129 7 0 chrX 99633131 99633426 -77340714 + AluJb SINE Alu 1 297 -15 2531 176 39 30 chrX 99633426 99633470 -77340670 - L1MB7 LINE L1 -1097 5585 5543 2004 97 0 14 chrX 99633984 99634263 -77339877 + AluSc SINE Alu 35 309 0 1937 99 0 0 chrX 99634748 99635000 -77339140 + AluSq SINE Alu 49 300 -13 927 124 0 0 chrX 99635670 99635815 -77338325 + (TA)n Simple_repeat Simple_repeat 2 146 0 1812 181 21 0 chrX 99637570 99637908 -77336232 - L1MB7 LINE L1 -1092 5552 5208 532 100 11 11 chrX 99637926 99638016 -77336124 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1543 124 4 77 chrX 99638017 99638290 -77335850 - AluSx SINE Alu -47 265 13 2182 226 150 75 chrX 99638327 99638442 -77335698 - L1MB7 LINE L1 -1772 4872 4767 2247 110 0 0 chrX 99638442 99638742 -77335398 - AluSx SINE Alu -12 300 1 2182 226 150 75 chrX 99638742 99638791 -77335349 - L1MB7 LINE L1 -1877 4767 4723 1597 162 37 0 chrX 99638791 99639090 -77335050 + AluSx SINE Alu 1 309 0 2182 226 150 75 chrX 99639090 99639569 -77334571 - L1MB7 LINE L1 -1921 4723 4281 2276 30 8 4 chrX 99639569 99639831 -77334309 + L1PA4 LINE L1 5893 6155 0 2182 226 150 75 chrX 99639831 99640309 -77333831 - L1MB7 LINE L1 -2363 4281 3663 1841 164 37 35 chrX 99640311 99640688 -77333452 - L1MA9 LINE L1 0 6312 5935 3436 144 22 0 chrX 99640691 99641259 -77332881 - L1MA9 LINE L1 -492 5820 5241 2206 93 3 63 chrX 99641296 99641629 -77332511 + AluSq SINE Alu 1 313 0 1540 228 104 0 chrX 99641711 99642075 -77332065 - L1MB7 LINE L1 -6139 403 2 438 262 215 0 chrX 99642452 99642601 -77331539 + MIR SINE MIR 44 224 -38 222 91 0 0 chrX 99642623 99642656 -77331484 + (CAT)n Simple_repeat Simple_repeat 2 34 0 212 119 0 24 chrX 99642834 99642876 -77331264 + (CAAAAA)n Simple_repeat Simple_repeat 1 41 0 282 125 0 0 chrX 99643530 99643578 -77330562 + (GAA)n Simple_repeat Simple_repeat 1 48 0 2045 121 7 10 chrX 99643750 99644057 -77330083 + AluSx SINE Alu 1 306 -6 221 292 0 31 chrX 99644476 99644541 -77329599 - MIR SINE MIR -195 67 5 1101 153 0 0 chrX 99644763 99644940 -77329200 - AluSg/x SINE Alu -2 310 134 2219 117 0 0 chrX 99644940 99645238 -77328902 - AluSx SINE Alu -14 298 1 2132 108 7 0 chrX 99645428 99645715 -77328425 + AluSx SINE Alu 1 289 -23 527 144 33 0 chrX 99645722 99645812 -77328328 - L1MB7 LINE L1 -16 6168 6076 1508 172 98 30 chrX 99645812 99646228 -77327912 - LTR53 LTR ERVL -1 518 1 828 139 15 0 chrX 99646243 99646380 -77327760 - AluSg/x SINE Alu -1 311 173 986 188 5 25 chrX 99646398 99646470 -77327670 - L1MB7 LINE L1 -108 6076 6004 1767 195 16 27 chrX 99646470 99646839 -77327301 - MLT1A1 LTR MaLR 0 365 1 986 188 5 25 chrX 99646839 99646968 -77327172 - L1MB7 LINE L1 -180 6004 5879 261 250 0 0 chrX 99646974 99647046 -77327094 + T-rich Low_complexity Low_complexity 1 72 0 903 131 0 8 chrX 99647064 99647194 -77326946 - FLAM_C SINE Alu -14 129 1 1535 185 13 36 chrX 99647201 99647509 -77326631 - AluJo SINE Alu -3 309 9 2779 182 26 18 chrX 99647517 99648083 -77326057 - L1MB7 LINE L1 -294 5890 5320 1709 157 88 83 chrX 99648080 99648298 -77325842 - L1MC3 LINE L1 -2 7783 7691 * 1768 154 0 33 chrX 99648298 99648597 -77325543 + AluJo SINE Alu 1 289 -23 1709 157 88 83 chrX 99648597 99648937 -77325203 - L1MC3 LINE L1 -94 7691 7354 289 297 0 0 chrX 99648937 99649011 -77325129 - MLT1F1 LTR MaLR -459 108 35 793 84 56 21 chrX 99649011 99649153 -77324987 - L1MC3 LINE L1 -688 7097 6951 * 4517 189 39 89 chrX 99649150 99649339 -77324801 + L1MC2 LINE L1 4090 4287 -1859 2124 139 3 0 chrX 99649339 99649641 -77324499 + AluSx SINE Alu 1 303 -9 4517 189 39 89 chrX 99649641 99649676 -77324464 + L1MC2 LINE L1 4287 4322 -1824 2127 131 0 28 chrX 99649676 99649997 -77324143 + AluSx SINE Alu 1 312 0 4517 189 39 89 chrX 99649997 99651069 -77323071 + L1MC2 LINE L1 4322 5321 -825 883 129 0 9 chrX 99651072 99651218 -77322922 - MSTA LTR MaLR -267 159 16 482 152 12 8 chrX 99651232 99651332 -77322808 + L1MC2 LINE L1 5895 5991 -342 2380 158 36 14 chrX 99651333 99651689 -77322451 + MSTA LTR MaLR 1 348 -80 2169 37 0 0 chrX 99651689 99651959 -77322181 - L1PA3 LINE L1 0 6155 5896 2380 158 36 14 chrX 99651959 99651979 -77322161 + MSTA LTR MaLR 348 366 -62 2138 121 0 0 chrX 99651979 99652269 -77321871 - AluSx SINE Alu -22 290 1 2380 158 36 14 chrX 99652269 99652310 -77321830 + MSTA LTR MaLR 366 428 0 1664 208 3 0 chrX 99652315 99652662 -77321478 - L1M4 LINE L1 -2155 4489 4142 1208 238 23 52 chrX 99652654 99652999 -77321141 - L1M4 LINE L1 -6200 342 8 * 23 0 0 0 chrX 99653393 99653416 -77320724 + AT_rich Low_complexity Low_complexity 1 23 0 201 159 0 0 chrX 99653426 99653470 -77320670 + A-rich Low_complexity Low_complexity 4 47 0 2580 153 48 26 chrX 99653473 99653977 -77320163 - L1MA8 LINE L1 -8 6283 5769 1446 209 79 0 chrX 99654025 99654341 -77319799 - L1MA4 LINE L1 -12 6288 5948 2903 159 2 15 chrX 99654357 99655012 -77319128 - L1MA4 LINE L1 -745 5401 4867 291 119 0 0 chrX 99655012 99655054 -77319086 - MER4A LTR ERV1 0 664 623 359 23 23 0 chrX 99655054 99655097 -77319043 - MER4A LTR ERV1 -360 304 261 621 101 0 11 chrX 99655097 99655186 -77318954 - MER4A LTR ERV1 -566 98 11 273 356 25 0 chrX 99656131 99656249 -77317891 - MER20B DNA MER1_type -608 175 55 1199 118 0 17 chrX 99656253 99656431 -77317709 - AluSg/x SINE Alu -1 311 137 459 306 65 98 chrX 99656560 99656736 -77317404 + L2 LINE L2 2944 3105 -167 1471 149 0 0 chrX 99656736 99656951 -77317189 - AluJo SINE Alu -5 307 93 459 306 65 98 chrX 99656951 99657111 -77317029 + L2 LINE L2 3105 3269 -3 215 313 0 50 chrX 99657224 99657304 -77316836 - L2 LINE L2 0 3313 3238 209 207 0 17 chrX 99658224 99658282 -77315858 + GA-rich Low_complexity Low_complexity 1 57 0 189 271 0 0 chrX 99659244 99659292 -77314848 + L2 LINE L2 3264 3311 -2 185 321 0 0 chrX 99659983 99660036 -77314104 - L2 LINE L2 -10 3262 3210 21 0 0 0 chrX 99660211 99660232 -77313908 + AT_rich Low_complexity Low_complexity 1 21 0 181 362 23 64 chrX 99660245 99660463 -77313677 - MIR SINE MIR -46 216 8 2016 120 28 0 chrX 99660508 99660799 -77313341 - AluSq SINE Alu -14 299 1 712 211 98 16 chrX 99660983 99661177 -77312963 - L2 LINE L2 0 3313 3104 3363 124 0 41 chrX 99661223 99661762 -77312378 - L1MA7 LINE L1 -158 6133 5617 2417 94 3 0 chrX 99661762 99662070 -77312070 - AluSx SINE Alu -3 309 1 1600 226 121 27 chrX 99662072 99662728 -77311412 - L2 LINE L2 -225 3088 2372 897 214 11 11 chrX 99663049 99663227 -77310913 + MER5B DNA MER1_type 1 178 0 409 311 30 15 chrX 99663635 99663770 -77310370 - MIR3 SINE MIR -32 176 40 1016 168 152 15 chrX 99664463 99664660 -77309480 + MER58A DNA MER1_type 1 224 0 375 245 29 50 chrX 99664689 99664828 -77309312 + MER5B DNA MER1_type 4 139 -39 261 178 22 0 chrX 99666155 99666200 -77307940 - L2 LINE L2 -1 3312 3267 405 333 0 9 chrX 99666416 99666530 -77307610 - MER5B DNA MER1_type -17 161 49 235 333 0 0 chrX 99666582 99666642 -77307498 + MER5B DNA MER1_type 118 177 -1 2005 147 7 0 chrX 99666646 99666938 -77307202 + AluSx SINE Alu 1 294 -18 225 0 0 0 chrX 99667039 99667064 -77307076 + (T)n Simple_repeat Simple_repeat 1 25 0 310 246 0 0 chrX 99667324 99667385 -77306755 + MER82 DNA MER2_type 23 83 -570 433 313 58 48 chrX 99667385 99667593 -77306547 - MIR SINE MIR -51 211 2 1203 176 5 5 chrX 99667625 99667835 -77306305 + MER82 DNA MER2_type 444 653 0 650 193 34 0 chrX 99668185 99668304 -77305836 + L2 LINE L2 3190 3312 -1 650 129 129 36 chrX 99668679 99668818 -77305322 - L2 LINE L2 -1 3312 3161 2456 139 52 80 chrX 99668823 99669229 -77304911 + L1MD2 LINE L1 5542 5931 -428 1553 196 10 23 chrX 99669229 99669530 -77304610 - AluJo SINE Alu -10 302 6 2456 139 52 80 chrX 99669530 99669676 -77304464 + L1MD2 LINE L1 5931 6079 -280 586 185 0 0 chrX 99669683 99669791 -77304349 - L1MA2 LINE L1 0 6304 6197 272 235 29 0 chrX 99669786 99669854 -77304286 + L1MD2 LINE L1 6073 6142 -217 * 523 172 24 107 chrX 99669855 99669902 -77304238 + L1MD2 LINE L1 6195 6244 -115 2178 130 0 9 chrX 99669902 99670217 -77303923 - AluSx SINE Alu 0 312 1 523 172 24 107 chrX 99670217 99670338 -77303802 + L1MD2 LINE L1 6244 6349 -10 275 226 151 0 chrX 99670353 99670459 -77303681 - L2 LINE L2 -183 3130 3009 340 214 11 28 chrX 99670755 99670937 -77303203 + (TG)n Simple_repeat Simple_repeat 1 179 0 259 241 0 0 chrX 99671102 99671160 -77302980 + L2 LINE L2 3000 3057 -215 189 280 47 56 chrX 99671375 99671482 -77302658 + MER5A DNA MER1_type 84 189 0 * 404 217 14 120 chrX 99671482 99671588 -77302552 - MIR3 SINE MIR -95 113 54 1362 252 93 40 chrX 99673072 99673644 -77300496 + L2 LINE L2 2704 3311 -2 405 141 0 0 chrX 99674224 99674295 -77299845 + (GA)n Simple_repeat Simple_repeat 1 71 0 344 22 22 0 chrX 99674448 99674493 -77299647 + (TG)n Simple_repeat Simple_repeat 2 47 0 210 71 0 0 chrX 99675355 99675383 -77298757 + (CTG)n Simple_repeat Simple_repeat 3 30 0 183 341 171 28 chrX 99675701 99675877 -77298263 + L3b LINE CR1 1324 1524 -59 2165 151 0 0 chrX 99675991 99676302 -77297838 - AluSx SINE Alu -1 311 1 872 261 11 15 chrX 99676797 99677057 -77297083 + MIR SINE MIR 3 261 -1 645 290 34 29 chrX 99678111 99678318 -77295822 + MIR SINE MIR 34 241 -21 261 265 171 26 chrX 99678433 99678550 -77295590 + L2 LINE L2 3180 3313 0 2490 91 0 0 chrX 99679503 99679811 -77294329 - AluSx SINE Alu -4 308 1 2362 99 0 10 chrX 99680580 99680894 -77293246 - AluSx SINE Alu -1 311 1 370 183 158 33 chrX 99681855 99681975 -77292165 - L2 LINE L2 0 3313 3179 485 245 238 0 chrX 99684117 99684264 -77289876 - MER5A DNA MER1_type -1 188 7 738 255 74 37 chrX 99684652 99684895 -77289245 - MIR SINE MIR 0 262 11 188 35 35 0 chrX 99684928 99684957 -77289183 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1472 152 0 74 chrX 99684978 99685247 -77288893 - AluJb SINE Alu -63 249 1 4719 261 60 105 chrX 99685451 99686038 -77288102 + L2 LINE L2 96 708 -2605 3930 133 26 67 chrX 99686038 99686109 -77288031 - L1MB3 LINE L1 -7 6176 6104 1845 170 11 3 chrX 99686109 99686391 -77287749 - AluJb SINE Alu -28 284 1 3930 133 26 67 chrX 99686391 99687076 -77287064 - L1MB3 LINE L1 -79 6104 5451 4719 261 60 105 chrX 99687076 99687815 -77286325 + L2 LINE L2 708 1479 -1834 2251 109 6 3 chrX 99687815 99688127 -77286013 - AluSq SINE Alu 0 313 1 4719 261 60 105 chrX 99688127 99688362 -77285778 + L2 LINE L2 1479 1723 -1590 7744 23 1 0 chrX 99688362 99689726 -77284414 + L1PA4 LINE L1 4772 6152 -3 4719 261 60 105 chrX 99689726 99690779 -77283361 + L2 LINE L2 1723 2548 -765 2502 88 7 0 chrX 99690779 99691087 -77283053 + AluSx SINE Alu 1 310 -2 4719 261 60 105 chrX 99691087 99691820 -77282320 + L2 LINE L2 2548 3313 0 181 339 0 0 chrX 99692159 99692221 -77281919 + L3 LINE CR1 1508 1569 -8 217 296 28 35 chrX 99692978 99693120 -77281020 + GA-rich Low_complexity Low_complexity 1 141 0 297 89 0 0 chrX 99693518 99693563 -77280577 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 246 0 33 chrX 99694124 99694185 -77279955 - L3 LINE CR1 -11 1566 1508 180 0 0 0 chrX 99695648 99695668 -77278472 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 439 321 74 16 chrX 99695669 99695859 -77278281 - L2 LINE L2 -4 3268 3068 512 247 258 5 chrX 99697006 99697192 -77276948 + MIR SINE MIR 28 260 -2 1058 231 64 4 chrX 99697425 99697659 -77276481 + MIR SINE MIR 12 259 -3 205 152 0 0 chrX 99697681 99697714 -77276426 + MIR SINE MIR 202 234 -28 298 283 237 23 chrX 99699021 99699198 -77274942 - MIR SINE MIR -25 237 23 261 250 222 0 chrX 99699405 99699513 -77274627 - L2 LINE L2 -4 3309 3178 564 180 0 0 chrX 99700033 99700122 -77274018 - AluSg/x SINE Alu -18 292 204 314 220 17 0 chrX 99700122 99700181 -77273959 - L2 LINE L2 -6 3266 3207 454 288 52 48 chrX 99700218 99700461 -77273679 + MIR SINE MIR 17 260 -2 428 352 52 10 chrX 99702084 99702277 -77271863 + MIR3 SINE MIR 2 202 -6 247 259 51 66 chrX 99703652 99703824 -77270316 - MIR SINE MIR -61 201 34 466 204 0 11 chrX 99703953 99704041 -77270099 + MER5B DNA MER1_type 92 178 0 1657 31 10 0 chrX 99704056 99704251 -77269889 + AluYb8 SINE Alu 118 314 -4 607 188 68 88 chrX 99704682 99704779 -77269361 - MIR SINE MIR -2 260 167 2295 83 6 45 chrX 99704779 99705093 -77269047 - AluSx SINE Alu -10 302 1 607 188 68 88 chrX 99705093 99705187 -77268953 - MIR SINE MIR -95 167 73 853 249 27 9 chrX 99705192 99705417 -77268723 + Charlie8 DNA MER1_type 48 276 -2141 513 166 33 126 chrX 99705826 99705977 -77268163 + MIR SINE MIR 126 262 0 455 311 154 55 chrX 99706237 99706581 -77267559 + L2 LINE L2 2890 3267 -5 727 277 56 4 chrX 99709463 99709694 -77264446 - MIR SINE MIR -12 250 8 1370 234 42 51 chrX 99710050 99710502 -77263638 - L2 LINE L2 0 3313 2866 708 256 110 40 chrX 99710775 99711002 -77263138 + MIR SINE MIR 20 262 0 1932 154 7 7 chrX 99712404 99712709 -77261431 - AluJb SINE Alu -7 305 1 531 250 154 6 chrX 99712861 99713017 -77261123 - MER5A DNA MER1_type 0 189 11 309 182 204 0 chrX 99713033 99713121 -77261019 - MER103 DNA DNA -47 119 14 777 288 34 25 chrX 99714061 99714297 -77259843 + MIR SINE MIR 23 260 -2 207 229 0 21 chrX 99714316 99714364 -77259776 + MIR SINE MIR 204 250 -12 435 282 43 8 chrX 99714556 99714673 -77259467 + MIR SINE MIR 120 240 -22 8996 27 0 1 chrX 99714936 99716770 -77257370 + L1PA4 LINE L1 4322 6155 0 240 59 0 0 chrX 99716807 99716841 -77257299 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 201 333 16 0 chrX 99716932 99716995 -77257145 + L2 LINE L2 3204 3267 -5 507 195 32 57 chrX 99717823 99717946 -77256194 - MER5B DNA MER1_type -6 172 53 2295 94 0 44 chrX 99718322 99718642 -77255498 - AluSx SINE Alu -6 306 1 1268 219 47 3 chrX 99718845 99719164 -77254976 + L1M4 LINE L1 4729 5061 -1085 266 271 43 57 chrX 99722234 99722304 -77251836 - MER91A DNA MER1_type -12 184 116 766 283 18 6 chrX 99722314 99722480 -77251660 - MER91A DNA MER1_type -27 169 2 467 202 32 81 chrX 99723592 99723716 -77250424 + MIR3 SINE MIR 65 182 -26 228 111 0 0 chrX 99723992 99724028 -77250112 + (TC)n Simple_repeat Simple_repeat 2 37 0 952 72 7 7 chrX 99724641 99724780 -77249360 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 2046 119 14 0 chrX 99724780 99725057 -77249083 - AluSq SINE Alu -32 281 1 685 134 143 25 chrX 99725552 99725671 -77248469 - FLAM_C SINE Alu 0 133 1 279 0 0 0 chrX 99725738 99725769 -77248371 + (TG)n Simple_repeat Simple_repeat 2 32 0 1153 130 54 0 chrX 99725770 99725955 -77248185 - L1MB4 LINE L1 -6 6174 5980 290 259 101 0 chrX 99725970 99726109 -77248031 - L1MC4 LINE L1 -149 7893 7741 231 335 13 89 chrX 99726990 99727148 -77246992 - L2 LINE L2 -13 3259 3114 662 238 14 7 chrX 99727166 99727309 -77246831 + MIR3 SINE MIR 30 173 -35 237 313 30 10 chrX 99727588 99727687 -77246453 - L2 LINE L2 -217 3055 2955 257 242 45 15 chrX 99728952 99729018 -77245122 - L2 LINE L2 -11 3261 3194 2279 74 0 11 chrX 99729420 99729727 -77244413 + AluSc SINE Alu 1 304 0 477 279 15 22 chrX 99729732 99729868 -77244272 - MIR SINE MIR -58 150 16 183 80 0 0 chrX 99730501 99730526 -77243614 + (CA)n Simple_repeat Simple_repeat 2 26 0 2388 89 0 3 chrX 99731500 99731803 -77242337 - AluSx SINE Alu -10 302 1 489 265 43 9 chrX 99732370 99732520 -77241620 + MIR SINE MIR 19 167 -62 699 283 11 6 chrX 99732659 99732836 -77241304 - MIR SINE MIR -37 225 48 784 59 0 84 chrX 99733009 99733128 -77241012 - L1P3 LINE L1 -5756 119 11 6692 60 16 7 chrX 99733128 99734278 -77239862 + L1PA8A LINE L1 4972 6129 -2 491 81 0 14 chrX 99734283 99734357 -77239783 + (GGAA)n Simple_repeat Simple_repeat 1 73 0 1947 199 39 90 chrX 99734879 99735437 -77238703 + MLT1F1 LTR MaLR 1 555 -12 850 188 167 0 chrX 99735786 99735972 -77238168 - MIR SINE MIR 0 262 46 2245 116 51 20 chrX 99736082 99736435 -77237705 + THE1B LTR MaLR 1 364 0 1106 264 55 3 chrX 99736977 99737269 -77236871 + L2 LINE L2 3006 3312 -1 220 327 79 0 chrX 99737288 99737389 -77236751 + L2 LINE L2 3166 3274 -39 623 133 36 152 chrX 99738058 99738223 -77235917 - L1MCa LINE L1 -5620 806 661 228 67 0 0 chrX 99738550 99738580 -77235560 + (TC)n Simple_repeat Simple_repeat 2 31 0 315 0 0 0 chrX 99738580 99738615 -77235525 + (CA)n Simple_repeat Simple_repeat 1 35 0 619 201 54 13 chrX 99739554 99739703 -77234437 + MER103 DNA DNA 5 159 -7 1942 165 7 0 chrX 99740112 99740415 -77233725 - AluSx SINE Alu -7 305 1 429 325 8 0 chrX 99740963 99741089 -77233051 + L3 LINE CR1 1035 1161 -416 300 336 97 19 chrX 99741187 99741446 -77232694 + L3 LINE CR1 1164 1442 -135 266 45 15 194 chrX 99741457 99741524 -77232616 + MIR3 SINE MIR 137 191 -17 205 288 30 61 chrX 99741978 99742044 -77232096 - L2 LINE L2 -82 3190 3127 * 431 226 104 98 chrX 99742031 99742195 -77231945 - MIR SINE MIR -1 261 97 598 219 88 0 chrX 99742203 99742363 -77231777 - MER104 DNA MER2_type -4 176 3 21 36 0 0 chrX 99742474 99742502 -77231638 + AT_rich Low_complexity Low_complexity 1 28 0 210 268 206 10 chrX 99743229 99743326 -77230814 - L2 LINE L2 -20 3252 3137 325 183 108 11 chrX 99743404 99743497 -77230643 + L1ME4a LINE L1 6019 6120 -1 189 94 0 0 chrX 99743756 99743788 -77230352 + (CA)n Simple_repeat Simple_repeat 2 33 0 531 0 0 0 chrX 99743788 99743847 -77230293 + (TATATG)n Simple_repeat Simple_repeat 3 61 0 804 285 59 80 chrX 99743873 99744434 -77229706 - L2 LINE L2 -510 2804 2256 1952 150 7 3 chrX 99744913 99745207 -77228933 + AluJb SINE Alu 1 295 -17 453 36 0 0 chrX 99745672 99745727 -77228413 + (TG)n Simple_repeat Simple_repeat 1 55 0 202 247 13 39 chrX 99747705 99747782 -77226358 + GA-rich Low_complexity Low_complexity 4 78 0 466 331 6 18 chrX 99748443 99748609 -77225531 + L2 LINE L2 2378 2541 -773 188 243 0 0 chrX 99748636 99748673 -77225467 + L2 LINE L2 2613 2649 -665 743 270 110 17 chrX 99748711 99749129 -77225011 + L1MC5 LINE L1 7299 7755 -206 295 238 32 24 chrX 99749143 99749269 -77224871 + L1MC5 LINE L1 7806 7932 -29 1463 171 123 0 chrX 99749270 99749547 -77224593 + AluJo SINE Alu 1 308 0 351 226 15 80 chrX 99749705 99749865 -77224275 + L2 LINE L2 3169 3269 -3 259 247 90 34 chrX 99749923 99750012 -77224128 - L2 LINE L2 -8 3305 3212 1792 155 0 31 chrX 99750021 99750332 -77223808 - AluJo SINE Alu 0 302 1 729 253 6 24 chrX 99750626 99750792 -77223348 + MER5A DNA MER1_type 27 189 0 308 299 153 33 chrX 99751060 99751451 -77222689 - L2 LINE L2 -837 2477 2040 280 117 17 17 chrX 99752362 99752422 -77221718 + (TG)n Simple_repeat Simple_repeat 2 61 0 216 67 0 0 chrX 99754808 99754838 -77219302 + (CA)n Simple_repeat Simple_repeat 2 31 0 360 0 0 0 chrX 99755002 99755042 -77219098 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 51 0 0 chrX 99755450 99755489 -77218651 + GC_rich Low_complexity Low_complexity 1 39 0 435 68 0 0 chrX 99755601 99755660 -77218480 + (TCC)n Simple_repeat Simple_repeat 2 60 0 307 60 40 0 chrX 99755661 99755711 -77218429 + (CGG)n Simple_repeat Simple_repeat 3 54 0 206 252 36 18 chrX 99755764 99755875 -77218265 + (CGGG)n Simple_repeat Simple_repeat 1 113 0 224 119 0 24 chrX 99756002 99756044 -77218096 + (AGGGGG)n Simple_repeat Simple_repeat 5 45 0 488 303 68 0 chrX 99758301 99758433 -77215707 + MIR SINE MIR 66 206 -56 431 250 222 0 chrX 99759271 99759415 -77214725 - MIR SINE MIR -36 226 51 481 231 206 35 chrX 99759429 99759628 -77214512 - MIR SINE MIR 0 262 30 207 0 0 0 chrX 99760958 99760981 -77213159 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 423 0 0 0 chrX 99760980 99761027 -77213113 + (GA)n Simple_repeat Simple_repeat 2 48 0 232 178 22 0 chrX 99761865 99761910 -77212230 + MER5A DNA MER1_type 46 91 -98 252 277 0 0 chrX 99762080 99762145 -77211995 + T-rich Low_complexity Low_complexity 1 65 0 441 308 51 0 chrX 99763102 99763282 -77210858 - MIR SINE MIR -54 208 17 212 291 34 43 chrX 99763548 99763665 -77210475 + MIR SINE MIR 67 182 -80 199 282 154 9 chrX 99764293 99764403 -77209737 + L2 LINE L2 2632 2757 -557 181 273 0 0 chrX 99765025 99765069 -77209071 - L3b LINE CR1 -427 1156 1113 578 275 96 8 chrX 99765589 99765829 -77208311 - MIR SINE MIR 0 262 2 964 233 35 0 chrX 99766023 99766255 -77207885 + MIR SINE MIR 13 252 -10 1814 132 19 50 chrX 99766464 99766905 -77207235 + L1M3 LINE L1 5144 5570 -610 1110 274 166 20 chrX 99766965 99767801 -77206339 - L2 LINE L2 -52 3261 2284 285 29 0 0 chrX 99767802 99767836 -77206304 + (CAT)n Simple_repeat Simple_repeat 1 34 0 599 271 96 11 chrX 99767837 99768025 -77206115 - MIR SINE MIR -13 249 46 758 310 96 15 chrX 99768041 99768373 -77205767 - L2 LINE L2 -1032 2282 1924 222 217 22 0 chrX 99768449 99768495 -77205645 + CT-rich Low_complexity Low_complexity 2 48 0 229 267 6 6 chrX 99769380 99769552 -77204588 + (TA)n Simple_repeat Simple_repeat 1 172 0 315 316 0 17 chrX 99769854 99769971 -77204169 + MIR3 SINE MIR 85 199 -9 1900 159 12 3 chrX 99769981 99770314 -77203826 + L1MA4A LINE L1 5968 6303 0 2266 72 38 3 chrX 99770379 99770672 -77203468 - AluY SINE Alu -8 303 1 846 214 115 0 chrX 99770821 99771055 -77203085 - MIR SINE MIR 0 262 2 1538 63 0 0 chrX 99772027 99772237 -77201903 + L1PA5 LINE L1 5947 6156 0 452 233 0 0 chrX 99773073 99773163 -77200977 - L2 LINE L2 -49 3223 3134 638 251 47 41 chrX 99773272 99773573 -77200567 - HAL1b LINE L1 0 2507 816 398 309 43 16 chrX 99773633 99773821 -77200319 - HAL1b LINE L1 -408 940 748 922 156 102 0 chrX 99773922 99774108 -77200032 + ORSL DNA AcHobo 2 206 -69 292 213 27 0 chrX 99774111 99774186 -77199954 - L1ME2 LINE L1 -226 5938 5862 2891 216 76 37 chrX 99774204 99775005 -77199135 - L1ME1 LINE L1 -5 6161 5393 612 128 147 0 chrX 99775005 99775114 -77199026 - FLAM_C SINE Alu -8 125 1 2891 216 76 37 chrX 99775114 99775547 -77198593 - L1ME1 LINE L1 -773 5393 4841 2136 118 3 7 chrX 99775547 99775851 -77198289 - AluSx SINE Alu -9 303 1 2891 216 76 37 chrX 99775851 99776046 -77198094 - L1ME1 LINE L1 -1325 4841 4655 189 171 0 0 chrX 99776046 99776081 -77198059 + T-rich Low_complexity Low_complexity 1 35 0 333 171 14 0 chrX 99776978 99777048 -77197092 - L1ME1 LINE L1 -1479 4667 4597 661 223 27 0 chrX 99777090 99777238 -77196902 - L1ME1 LINE L1 -1554 4592 4441 462 249 129 18 chrX 99777279 99777504 -77196636 - HAL1 LINE L1 -1151 1356 1107 1347 193 37 0 chrX 99777504 99777748 -77196392 + MLT1E1 LTR MaLR 1 253 -401 32613 65 1 5 chrX 99777748 99782765 -77191375 - L1PA6 LINE L1 -11 6143 1146 1375 234 106 11 chrX 99782765 99783141 -77190999 + MLT1E1 LTR MaLR 243 654 0 2227 110 0 0 chrX 99783215 99783506 -77190634 + AluSx SINE Alu 3 293 -19 243 331 63 33 chrX 99783594 99783893 -77190247 - HAL1 LINE L1 -1441 1066 759 633 253 90 77 chrX 99784117 99784496 -77189644 - HAL1 LINE L1 -2120 387 4 436 203 49 0 chrX 99784499 99784622 -77189518 + MIR SINE MIR 134 262 0 219 69 0 0 chrX 99784944 99784973 -77189167 + (CAG)n Simple_repeat Simple_repeat 2 30 0 424 72 29 0 chrX 99785627 99785696 -77188444 + (GA)n Simple_repeat Simple_repeat 2 72 0 201 271 102 0 chrX 99785733 99785792 -77188348 + L3 LINE CR1 1511 1575 -2 220 217 57 75 chrX 99786041 99786147 -77187993 + MIR SINE MIR 93 196 -66 830 181 0 0 chrX 99786252 99786385 -77187755 - FLAM_A SINE Alu 0 133 1 283 231 147 63 chrX 99786408 99786551 -77187589 - L1ME4a LINE L1 -2 6119 5965 225 293 131 10 chrX 99786551 99786650 -77187490 + L2 LINE L2 3203 3313 0 1335 240 59 0 chrX 99786677 99787035 -77187105 - L1ME4a LINE L1 -217 5904 5526 301 242 0 0 chrX 99787830 99787896 -77186244 + L2 LINE L2 3248 3313 0 844 233 50 33 chrX 99788075 99788315 -77185825 + MIR SINE MIR 12 255 -7 1731 209 78 74 chrX 99788318 99788673 -77185467 - MLT1D LTR MaLR 0 505 146 1702 247 45 28 chrX 99788673 99789183 -77184957 + LTR53 LTR ERVL 1 519 0 1731 209 78 74 chrX 99789183 99789330 -77184810 - MLT1D LTR MaLR -359 146 1 695 231 0 0 chrX 99789478 99789599 -77184541 - FLAM_A SINE Alu -12 121 1 647 211 36 143 chrX 99789746 99789988 -77184152 + MLT1J LTR MaLR 1 205 -306 1881 158 24 0 chrX 99789988 99790280 -77183860 + AluSx SINE Alu 1 299 -13 647 211 36 143 chrX 99790280 99790345 -77183795 + MLT1J LTR MaLR 205 275 -236 273 128 0 0 chrX 99790362 99790409 -77183731 + (TCC)n Simple_repeat Simple_repeat 3 49 0 454 346 130 19 chrX 99790482 99790950 -77183190 + L2 LINE L2 676 1195 -2119 1245 276 141 29 chrX 99790997 99791330 -77182810 + HAL1 LINE L1 10 304 -2203 2135 101 31 0 chrX 99791330 99791616 -77182524 + AluSc SINE Alu 1 295 -14 1245 276 141 29 chrX 99791616 99791908 -77182232 + HAL1 LINE L1 304 705 -1802 1129 145 161 4 chrX 99791908 99792156 -77181984 - Tigger6b DNA MER2_type -2 1595 1309 3842 213 31 20 chrX 99792587 99793466 -77180674 + L1PB4 LINE L1 1070 1957 -4892 * 11769 158 19 12 chrX 99793458 99794890 -77179250 + L1PB4 LINE L1 3714 5135 -1723 2112 190 69 58 chrX 99794890 99795405 -77178735 + MLT2B3 LTR ERVL 1 509 -45 252 0 0 0 chrX 99795405 99795433 -77178707 + (TC)n Simple_repeat Simple_repeat 1 28 0 252 0 0 0 chrX 99795432 99795460 -77178680 + (CA)n Simple_repeat Simple_repeat 1 28 0 2112 190 69 58 chrX 99795433 99795492 -77178648 + MLT2B3 LTR ERVL 509 554 0 11769 158 19 12 chrX 99795492 99796647 -77177493 + L1PB4 LINE L1 5135 6329 -529 2423 84 0 6 chrX 99796647 99796958 -77177182 + AluSc SINE Alu 1 309 0 11769 158 19 12 chrX 99796958 99797490 -77176650 + L1PB4 LINE L1 6329 6856 -2 1690 162 46 36 chrX 99797497 99797799 -77176341 + AluJb SINE Alu 1 305 -7 6316 156 98 24 chrX 99797808 99799027 -77175113 - Tigger6b DNA MER2_type -280 1317 8 421 221 89 25 chrX 99799132 99799199 -77174941 + HAL1 LINE L1 826 887 -1620 336 111 0 0 chrX 99799199 99799253 -77174887 + (CA)n Simple_repeat Simple_repeat 1 54 0 421 221 89 25 chrX 99799253 99799343 -77174797 + HAL1 LINE L1 887 993 -1514 519 282 21 64 chrX 99799359 99799685 -77174455 - MLT1H LTR MaLR -42 507 196 281 291 71 89 chrX 99799766 99800048 -77174092 - MLT1-int LTR MaLR -24 1347 1071 41 21 0 0 chrX 99800422 99800470 -77173670 + AT_rich Low_complexity Low_complexity 1 48 0 812 177 0 0 chrX 99800470 99800594 -77173546 - FLAM_C SINE Alu -19 124 1 1115 197 77 120 chrX 99800663 99800835 -77173305 + MLT1B LTR MaLR 4 182 -208 459 35 0 0 chrX 99800835 99800892 -77173248 + (CA)n Simple_repeat Simple_repeat 1 57 0 1115 197 77 120 chrX 99800892 99801094 -77173046 + MLT1B LTR MaLR 182 362 -28 1095 213 31 0 chrX 99801101 99801355 -77172785 - L1MA4 LINE L1 -39 6261 6000 413 136 0 0 chrX 99801594 99801653 -77172487 - AluS SINE Alu -27 282 224 284 154 0 0 chrX 99801655 99801694 -77172446 - Alu SINE Alu -262 40 2 5618 167 51 12 chrX 99801694 99801985 -77172155 - L1P5 LINE L1 -366 5785 5507 2000 112 67 0 chrX 99801985 99802270 -77171870 - AluSg SINE Alu -6 304 1 5618 167 51 12 chrX 99802270 99803594 -77170546 - L1P5 LINE L1 -644 5507 4104 649 118 0 0 chrX 99803571 99803673 -77170467 - L1MA2 LINE L1 -155 6149 6048 * 2569 198 8 68 chrX 99803647 99803794 -77170346 - L1M4 LINE L1 -3026 3120 2966 2277 105 3 16 chrX 99803794 99804107 -77170033 + AluSq SINE Alu 1 309 -4 2569 198 8 68 chrX 99804107 99804229 -77169911 - L1M4 LINE L1 -3180 2966 2838 2146 138 0 0 chrX 99804229 99804525 -77169615 + AluSx SINE Alu 1 296 -16 2569 198 8 68 chrX 99804525 99804850 -77169290 - L1M4 LINE L1 -3308 2838 2571 2285 106 3 3 chrX 99804850 99805162 -77168978 + AluSx SINE Alu 1 312 0 2569 198 8 68 chrX 99805162 99805273 -77168867 - L1M4 LINE L1 -3575 2571 2455 470 272 150 22 chrX 99805410 99805590 -77168550 + MIR SINE MIR 12 214 -48 189 74 0 0 chrX 99807021 99807048 -77167092 + (GGA)n Simple_repeat Simple_repeat 2 28 0 706 264 47 13 chrX 99807793 99808028 -77166112 + MIR SINE MIR 19 261 -1 2230 119 16 0 chrX 99808185 99808488 -77165652 + AluSx SINE Alu 1 308 -4 2095 153 30 0 chrX 99809102 99809435 -77164705 - MER2 DNA MER2_type -1 343 1 204 180 0 100 chrX 99810636 99810736 -77163404 + (CCCCAG)n Simple_repeat Simple_repeat 5 94 0 569 135 0 10 chrX 99812382 99812486 -77161654 + (CAG)n Simple_repeat Simple_repeat 1 103 0 200 97 32 0 chrX 99813352 99813383 -77160757 + (CAGCC)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chrX 99814042 99814076 -77160064 + AT_rich Low_complexity Low_complexity 1 34 0 307 254 144 69 chrX 99814782 99814955 -77159185 - MER91A DNA MER1_type -9 187 2 2085 97 0 42 chrX 99814988 99815299 -77158841 - AluSx SINE Alu -14 298 1 303 288 76 25 chrX 99815655 99815773 -77158367 + L2 LINE L2 3149 3272 0 897 238 90 18 chrX 99817037 99817260 -77156880 - MIR SINE MIR -19 243 5 1710 155 3 42 chrX 99817347 99817657 -77156483 - AluJb SINE Alu -14 298 1 2079 94 24 0 chrX 99818156 99818444 -77155696 - AluSp SINE Alu -18 295 1 1293 176 112 0 chrX 99818768 99819035 -77155105 + AluJo SINE Alu 1 297 -15 288 240 165 40 chrX 99819245 99819425 -77154715 + MIR3 SINE MIR 11 210 -52 21 0 0 0 chrX 99819910 99819931 -77154209 + AT_rich Low_complexity Low_complexity 1 21 0 2102 126 0 0 chrX 99819944 99820253 -77153887 + AluSx SINE Alu 3 311 -1 361 182 0 101 chrX 99820313 99820412 -77153728 - L1MA9 LINE L1 -232 6080 5992 1239 111 0 0 chrX 99820531 99820702 -77153438 - AluSg/x SINE Alu -18 292 122 2040 100 0 43 chrX 99820717 99821018 -77153122 - AluSq SINE Alu -25 288 1 203 0 37 0 chrX 99821048 99821075 -77153065 + (TTTTTA)n Simple_repeat Simple_repeat 1 28 0 8081 18 0 1 chrX 99821076 99822746 -77151394 - L1HS LINE L1 -3 6152 4484 610 259 7 7 chrX 99823273 99823420 -77150720 + MIR3 SINE MIR 19 165 -43 1973 106 0 48 chrX 99823943 99824255 -77149885 + AluSx SINE Alu 1 297 -15 1775 78 0 0 chrX 99824445 99824675 -77149465 + AluY SINE Alu 68 297 -14 185 318 55 73 chrX 99825138 99825248 -77148892 + L2 LINE L2 3197 3304 -9 2443 62 0 3 chrX 99825248 99825556 -77148584 + AluY SINE Alu 1 307 -4 1775 138 7 16 chrX 99825568 99825873 -77148267 + AluJb SINE Alu 2 303 -9 306 0 0 0 chrX 99825888 99825922 -77148218 + (A)n Simple_repeat Simple_repeat 1 34 0 1804 186 5 62 chrX 99826299 99826334 -77147806 - MLT2C1 LTR ERVL 0 397 362 2151 102 3 13 chrX 99826334 99826649 -77147491 + AluSq SINE Alu 1 312 -1 1804 186 5 62 chrX 99826649 99827032 -77147108 - MLT2C1 LTR ERVL -35 362 3 827 165 8 0 chrX 99827032 99827159 -77146981 + FLAM_A SINE Alu 1 128 -5 2492 57 0 16 chrX 99827667 99827983 -77146157 - AluY SINE Alu 0 311 1 2091 105 0 63 chrX 99827997 99828330 -77145810 - AluSq SINE Alu -1 312 1 2020 107 0 17 chrX 99828398 99828731 -77145409 + AluSq SINE Alu 2 329 0 1279 166 153 0 chrX 99828910 99829151 -77144989 - AluSg1 SINE Alu -31 278 1 5012 112 30 87 chrX 99829197 99829378 -77144762 - Tigger1 DNA MER2_type 0 2418 2228 2182 184 31 14 chrX 99829378 99829797 -77144343 - MSTB LTR MaLR 0 426 1 5012 112 30 87 chrX 99829797 99829826 -77144314 - Tigger1 DNA MER2_type -190 2228 2199 1913 155 0 3 chrX 99829826 99830130 -77144010 + AluSx SINE Alu 1 303 -9 5012 112 30 87 chrX 99830130 99830410 -77143730 - Tigger1 DNA MER2_type -219 2199 1905 2411 74 0 0 chrX 99830410 99830719 -77143421 - AluY SINE Alu -2 309 1 5012 112 30 87 chrX 99830719 99831143 -77142997 - Tigger1 DNA MER2_type -513 1905 1554 725 222 48 68 chrX 99831265 99831417 -77142723 + MLT1H1 LTR MaLR 253 385 -170 964 236 0 0 chrX 99831417 99831591 -77142549 - MER45A DNA AcHobo -4 174 1 725 222 48 68 chrX 99831591 99831718 -77142422 + MLT1H1 LTR MaLR 385 513 -42 10362 105 13 58 chrX 99831729 99832508 -77141632 - Tigger1 DNA MER2_type -851 1567 898 2410 42 0 0 chrX 99832508 99832794 -77141346 - AluY SINE Alu -6 305 20 10362 105 13 58 chrX 99832794 99833654 -77140486 - Tigger1 DNA MER2_type -1520 898 1 213 41 20 82 chrX 99833723 99833772 -77140368 + (TTTAA)n Simple_repeat Simple_repeat 5 50 0 280 325 90 27 chrX 99833853 99834231 -77139909 + L2 LINE L2 2611 3088 -184 484 251 58 38 chrX 99834259 99834478 -77139662 + MLT1J2 LTR MaLR 8 272 -239 1356 228 69 109 chrX 99834703 99834889 -77139251 + L2 LINE L2 2625 2817 -496 1937 137 0 0 chrX 99834889 99835182 -77138958 - AluJb SINE Alu -15 297 5 1356 228 69 109 chrX 99835182 99835201 -77138939 + L2 LINE L2 2817 2835 -478 1763 111 48 11 chrX 99835201 99835492 -77138648 - AluSx SINE Alu 0 301 1 1356 228 69 109 chrX 99835492 99835998 -77138142 + L2 LINE L2 2835 3313 0 297 229 0 16 chrX 99836024 99836085 -77138055 + L2 LINE L2 3206 3265 -7 279 228 168 30 chrX 99836286 99836387 -77137753 + MIR3 SINE MIR 91 205 -3 184 163 50 113 chrX 99839478 99839558 -77134582 - L3 LINE CR1 -198 1379 1305 324 0 0 0 chrX 99839614 99839650 -77134490 + (CA)n Simple_repeat Simple_repeat 2 37 0 506 221 118 7 chrX 99839701 99839837 -77134303 + MIR SINE MIR 103 253 -9 22 80 0 0 chrX 99840047 99840097 -77134043 + AT_rich Low_complexity Low_complexity 1 50 0 886 200 0 0 chrX 99840097 99840257 -77133883 - FAM SINE Alu -17 168 9 850 238 93 7 chrX 99840274 99840543 -77133597 - L1ME LINE L1 -299 5822 5531 22 0 0 0 chrX 99840548 99840570 -77133570 + AT_rich Low_complexity Low_complexity 1 22 0 2133 82 14 7 chrX 99840573 99840864 -77133276 - AluSq SINE Alu -20 293 1 475 307 49 6 chrX 99840864 99841027 -77133113 - MIR SINE MIR -1 261 92 1164 37 0 0 chrX 99842016 99842150 -77131990 + AluY SINE Alu 1 134 -177 1028 122 78 0 chrX 99842250 99842430 -77131710 - MER2 DNA MER2_type -30 315 122 1959 116 0 7 chrX 99842430 99842741 -77131399 + AluSx SINE Alu 1 309 0 589 148 109 70 chrX 99842750 99842878 -77131262 + AluJo SINE Alu 2 134 -178 1940 112 7 27 chrX 99842921 99843060 -77131080 + AluSx SINE Alu 1 141 -171 2109 117 3 0 chrX 99843060 99843359 -77130781 + AluSx SINE Alu 5 304 -8 1940 112 7 27 chrX 99843359 99843513 -77130627 + AluSx SINE Alu 141 288 -24 219 36 0 0 chrX 99843513 99843541 -77130599 + (TA)n Simple_repeat Simple_repeat 2 29 0 288 224 0 35 chrX 99843548 99843606 -77130534 - MER2 DNA MER2_type -288 57 2 293 300 122 0 chrX 99844080 99844170 -77129970 - L2 LINE L2 -4 3268 3168 30 27 0 0 chrX 99844329 99844366 -77129774 + AT_rich Low_complexity Low_complexity 1 37 0 730 194 0 8 chrX 99844764 99844898 -77129242 + FLAM_A SINE Alu 1 133 0 1684 159 13 3 chrX 99845045 99845346 -77128794 + AluSx SINE Alu 1 304 -8 354 278 45 8 chrX 99845388 99845521 -77128619 - AluSg/x SINE Alu 0 302 165 319 200 0 58 chrX 99948336 99948456 -77025684 + T-rich Low_complexity Low_complexity 2 114 0 501 294 37 37 chrX 99949186 99949373 -77024767 + MIR SINE MIR 75 261 -1 677 229 97 29 chrX 99950134 99950367 -77023773 + MIR SINE MIR 3 258 -4 898 210 15 25 chrX 99950519 99950719 -77023421 + Charlie8 DNA MER1_type 1 198 -2219 228 137 0 59 chrX 99951678 99951729 -77022411 + (GGAGAA)n Simple_repeat Simple_repeat 6 53 0 510 17 0 0 chrX 99952113 99952172 -77021968 + (GA)n Simple_repeat Simple_repeat 1 59 0 297 183 0 0 chrX 99952199 99952259 -77021881 + GA-rich Low_complexity Low_complexity 2 61 0 3856 124 26 10 chrX 99953260 99953842 -77020298 - L1PA13 LINE L1 -6 6157 5567 781 200 32 7 chrX 99953842 99953997 -77020143 + L1P LINE L1 4939 5097 -1049 767 303 70 35 chrX 99954140 99954951 -77019189 - L1M4b LINE L1 -4573 2549 1710 290 299 45 27 chrX 99954930 99955151 -77018989 - L1M4b LINE L1 -4945 1478 1246 * 8933 113 2 0 chrX 99955178 99956413 -77017727 + L1P LINE L1 11 1248 -4898 401 335 3 28 chrX 99956695 99956925 -77017215 + CT-rich Low_complexity Low_complexity 1 224 0 308 311 177 43 chrX 99958750 99959101 -77015039 - L2 LINE L2 -4 3268 2871 1348 209 30 0 chrX 99959124 99959421 -77014719 - Charlie4a DNA MER1_type -170 338 33 1378 169 17 0 chrX 99959422 99959653 -77014487 - AluSq SINE Alu -12 301 67 1791 162 44 0 chrX 99959758 99960054 -77014086 - MER47A DNA MER2_type -57 309 1 467 252 93 68 chrX 99960066 99960376 -77013764 + HAL1 LINE L1 2182 2499 -8 609 275 21 21 chrX 99962101 99962290 -77011850 - MER5A DNA MER1_type 0 189 1 300 284 37 0 chrX 99962301 99962382 -77011758 - L2 LINE L2 -3 3269 3186 331 200 13 40 chrX 99962409 99962484 -77011656 + L2 LINE L2 3241 3313 0 225 200 0 0 chrX 99962598 99962638 -77011502 - L2 LINE L2 -16 3256 3217 217 215 47 145 chrX 99962656 99962828 -77011312 - L2 LINE L2 -186 3086 2932 957 274 47 25 chrX 99963105 99963422 -77010718 + L3 LINE CR1 370 693 -884 186 178 260 0 chrX 99963424 99963497 -77010643 + L3 LINE CR1 1390 1481 -96 674 344 61 8 chrX 99963500 99963747 -77010393 + MIR SINE MIR 2 261 -1 218 250 198 87 chrX 99963740 99963912 -77010228 + L3 LINE CR1 633 823 -754 * 2053 129 7 3 chrX 99963912 99964207 -77009933 + AluJb SINE Alu 1 296 -16 325 297 85 100 chrX 99964347 99964606 -77009534 - L2 LINE L2 -1 3271 3017 241 208 136 56 chrX 99964629 99964754 -77009386 - L1MC4a LINE L1 -1637 6171 6037 1657 306 75 73 chrX 99964776 99966462 -77007678 - L2 LINE L2 -248 3024 1317 268 349 40 7 chrX 99966479 99966631 -77007509 - L2 LINE L2 -2605 709 553 749 285 205 24 chrX 99966800 99967210 -77006930 + L3 LINE CR1 1018 1501 -76 993 136 0 0 chrX 99967915 99968062 -77006078 + L1PB4 LINE L1 6010 6156 0 675 208 169 0 chrX 99968251 99968405 -77005735 + MER5A DNA MER1_type 10 189 0 180 0 0 0 chrX 99968581 99968601 -77005539 + (GAAAA)n Simple_repeat Simple_repeat 3 22 0 795 235 65 33 chrX 99968620 99968854 -77005286 + MIR SINE MIR 23 262 0 1895 145 0 37 chrX 99970358 99970773 -77003367 - AluJb SINE Alu 0 403 1 286 280 0 54 chrX 99971134 99971227 -77002913 - MIR SINE MIR -8 254 167 188 324 70 0 chrX 99971267 99971338 -77002802 - MIR SINE MIR 0 262 187 198 276 18 149 chrX 99971369 99971566 -77002574 + L2 LINE L2 2985 3150 -122 336 48 0 0 chrX 99971566 99971608 -77002532 + (CA)n Simple_repeat Simple_repeat 2 43 0 198 276 18 149 chrX 99971608 99971638 -77002502 + L2 LINE L2 3150 3182 -90 630 66 66 0 chrX 99971694 99971785 -77002355 + L1MA9 LINE L1 6182 6278 -34 2338 96 0 0 chrX 99971785 99972097 -77002043 + AluSx SINE Alu 1 312 0 1069 138 0 0 chrX 99972099 99972258 -77001882 - AluSx SINE Alu -153 159 1 185 318 23 0 chrX 99972323 99972367 -77001773 - L2 LINE L2 -14 3258 3214 314 337 0 0 chrX 99972502 99972588 -77001552 + L1MC4 LINE L1 6614 6699 -1343 217 175 25 0 chrX 99972588 99972628 -77001512 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2332 138 28 13 chrX 99972629 99973027 -77001113 + L1MA9 LINE L1 5782 6185 -127 2089 122 0 6 chrX 99974220 99974532 -76999608 + AluSx SINE Alu 1 310 -2 750 260 83 29 chrX 99975192 99975434 -76998706 - MIR SINE MIR -1 261 7 362 333 105 8 chrX 99976349 99976607 -76997533 + L2 LINE L2 2538 2820 -494 307 156 117 13 chrX 99976636 99976713 -76997427 - MER53 DNA DNA -4 185 101 214 295 123 25 chrX 99977122 99977244 -76996896 + L2 LINE L2 3180 3313 0 225 180 0 98 chrX 99977253 99977314 -76996826 + L2 LINE L2 3141 3195 -77 226 323 83 50 chrX 99977341 99977737 -76996403 - L2 LINE L2 -42 3230 2816 1232 172 9 121 chrX 99977781 99978033 -76996107 + L1MB8 LINE L1 5883 6092 -86 2003 92 0 0 chrX 99978033 99978314 -76995826 - AluSx SINE Alu 0 301 21 1232 172 9 121 chrX 99978314 99978392 -76995748 + L1MB8 LINE L1 6092 6177 -1 898 123 8 0 chrX 99978402 99978532 -76995608 + FLAM_C SINE Alu 2 132 -1 539 340 10 28 chrX 99978541 99978832 -76995308 - L2 LINE L2 -619 2695 2410 289 296 39 108 chrX 99979392 99979595 -76994545 + MER5A DNA MER1_type 1 189 0 252 262 0 16 chrX 99979955 99980016 -76994124 + L2 LINE L2 3250 3309 -4 1124 302 48 19 chrX 99980262 99980850 -76993290 - L2 LINE L2 0 3313 2711 180 77 0 0 chrX 99980852 99980878 -76993262 + (TG)n Simple_repeat Simple_repeat 1 26 0 667 139 0 41 chrX 99980880 99981002 -76993138 - AluJb SINE Alu -194 118 2 361 200 178 44 chrX 99981002 99981137 -76993003 - L2 LINE L2 -599 2715 2563 415 169 0 0 chrX 99981148 99981219 -76992921 - MIR3 SINE MIR -52 156 86 1990 106 51 0 chrX 99982056 99982349 -76991791 - AluSx SINE Alu -4 308 1 477 224 149 0 chrX 99982503 99982637 -76991503 + MIR3 SINE MIR 37 190 -18 762 257 2 71 chrX 99982654 99982899 -76991241 - MIR SINE MIR -27 235 16 2174 183 52 76 chrX 99984272 99984809 -76989331 + L1MC4a LINE L1 5521 6044 -1764 1021 288 126 34 chrX 99984853 99985340 -76988800 - L2 LINE L2 -183 3089 2570 1077 123 43 0 chrX 99985340 99985503 -76988637 + MER46A DNA MER2_type 1 170 -66 387 309 173 39 chrX 99985503 99986175 -76987965 - L2 LINE L2 -1034 2280 1519 359 317 28 14 chrX 99986900 99987045 -76987095 + MIR3 SINE MIR 30 176 -32 2196 94 0 3 chrX 99987062 99987359 -76986781 - AluY SINE Alu -15 296 1 1703 145 3 16 chrX 99987382 99987685 -76986455 - AluJb SINE Alu -13 299 1 5972 177 22 15 chrX 99987685 99988712 -76985428 - L1MC1 LINE L1 -8 6605 5587 1796 130 25 0 chrX 99988712 99988988 -76985152 + AluJb SINE Alu 12 294 -18 5972 177 22 15 chrX 99988988 99989031 -76985109 - L1MC1 LINE L1 -1026 5587 5546 1961 131 0 10 chrX 99989031 99989328 -76984812 - AluJb SINE Alu -18 294 1 5972 177 22 15 chrX 99989328 99989628 -76984512 - L1MC1 LINE L1 -1067 5546 5221 5110 186 21 44 chrX 99989657 99990195 -76983945 - L1MC1 LINE L1 -2658 3768 3219 1607 132 3 135 chrX 99990195 99990543 -76983597 - AluJo SINE Alu 0 302 1 5110 186 21 44 chrX 99990543 99991881 -76982259 - L1MC1 LINE L1 -3207 3219 1935 262 108 0 0 chrX 99991881 99991918 -76982222 - tRNA-Lys-AAG tRNA tRNA -39 37 1 1726 167 0 0 chrX 99991918 99992199 -76981941 + L1PA16 LINE L1 5791 6071 -95 2225 136 74 54 chrX 99992258 99992545 -76981595 - L1MC1 LINE L1 -4523 1903 1623 2052 85 41 7 chrX 99992545 99992861 -76981279 - AluY SINE Alu 0 311 1 2225 136 74 54 chrX 99992861 99993271 -76980869 - L1MC1 LINE L1 -4803 1623 1154 242 128 43 0 chrX 99993271 99993318 -76980822 + CT-rich Low_complexity Low_complexity 3 51 0 2183 98 3 9 chrX 99993321 99993636 -76980504 - AluSp SINE Alu 0 313 1 1360 142 122 28 chrX 99993702 99993956 -76980184 + AluJb SINE Alu 13 290 -22 5282 128 41 133 chrX 99993956 99994273 -76979867 - L1MC1 LINE L1 -5297 1129 784 2151 115 3 3 chrX 99994273 99994585 -76979555 - AluSx SINE Alu 0 312 1 5282 128 41 133 chrX 99994585 99994664 -76979476 - L1MC1 LINE L1 -5642 784 699 2119 108 7 3 chrX 99994664 99994961 -76979179 - AluSx SINE Alu -14 298 1 5282 128 41 133 chrX 99994961 99995020 -76979120 - L1MC1 LINE L1 -5727 699 636 530 98 0 24 chrX 99995020 99995102 -76979038 + MADE1 DNA Mariner 1 80 0 5282 128 41 133 chrX 99995102 99995395 -76978745 - L1MC1 LINE L1 -5790 636 535 1796 146 13 7 chrX 99995395 99995568 -76978572 - AluJb SINE Alu -8 304 127 210 37 0 0 chrX 99995568 99995595 -76978545 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1796 146 13 7 chrX 99995595 99995723 -76978417 - AluJb SINE Alu -185 127 1 5282 128 41 133 chrX 99995723 99996209 -76977931 - L1MC1 LINE L1 -5891 535 6 537 305 30 0 chrX 99996223 99996354 -76977786 + L2 LINE L2 3122 3256 -16 457 180 208 79 chrX 99996400 99996588 -76977552 + L2 LINE L2 3056 3313 0 294 29 0 0 chrX 99997357 99997392 -76976748 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1685 235 84 25 chrX 99998296 99998772 -76975368 + MLT1J LTR MaLR 7 510 -1 366 263 12 0 chrX 99998979 99999059 -76975081 + L2 LINE L2 3157 3237 -35 2112 103 0 0 chrX 99999088 99999369 -76974771 + AluSx SINE Alu 1 281 -31 267 103 0 0 chrX 99999545 99999584 -76974556 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 2183 106 0 3 chrX 99999587 99999890 -76974250 - AluSg SINE Alu -8 302 1 2266 104 0 0 chrX 99999896 100000204 -76973936 - AluSg SINE Alu -2 308 1 1948 135 3 0 chrX 100000207 100000504 -76973636 - AluSx SINE Alu -14 298 1 2057 290 132 13 chrX 100000513 100001613 -76972527 - L2 LINE L2 -18 3295 2065 183 80 0 0 chrX 100001710 100001735 -76972405 + (CA)n Simple_repeat Simple_repeat 2 26 0 403 291 85 48 chrX 100002015 100002204 -76971936 + L2 LINE L2 3077 3272 0 565 213 7 44 chrX 100002247 100002383 -76971757 + MER5B DNA MER1_type 47 177 -1 358 307 13 13 chrX 100002452 100002605 -76971535 + MIR3 SINE MIR 56 208 0 1953 124 0 0 chrX 100003143 100003418 -76970722 + AluSx SINE Alu 1 275 -37 738 20 10 20 chrX 100003426 100003528 -76970612 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 1985 107 21 0 chrX 100003528 100003817 -76970323 + AluSg SINE Alu 2 296 -14 339 25 0 0 chrX 100003817 100003857 -76970283 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 521 276 22 8 chrX 100004135 100004269 -76969871 - MIR3 SINE MIR -38 170 35 1114 152 5 42 chrX 100004812 100005029 -76969111 + L1MB3 LINE L1 5975 6183 0 328 311 118 19 chrX 100005146 100005307 -76968833 - MER5A DNA MER1_type -6 183 7 251 296 106 28 chrX 100005353 100005532 -76968608 + L2 LINE L2 2563 2755 -559 835 222 10 43 chrX 100005819 100006026 -76968114 + MIR SINE MIR 63 262 0 2315 78 3 0 chrX 100006345 100006638 -76967502 - AluSq SINE Alu -19 294 1 481 132 113 47 chrX 100006871 100006977 -76967163 - L1MA8 LINE L1 0 6291 6179 24 0 0 0 chrX 100007080 100007104 -76967036 + GC_rich Low_complexity Low_complexity 1 24 0 267 232 49 24 chrX 100007241 100007323 -76966817 + MIR SINE MIR 82 165 -97 1661 147 10 29 chrX 100008250 100008562 -76965578 + AluJo SINE Alu 1 306 -6 528 260 78 7 chrX 100009449 100009660 -76964480 + MIR SINE MIR 24 252 -10 341 71 0 0 chrX 100013869 100013911 -76960229 + 5S rRNA rRNA 1 42 -79 458 253 197 25 chrX 100013968 100014166 -76959974 - MIR SINE MIR 0 262 31 2127 88 0 3 chrX 100014958 100015268 -76958872 + AluSq SINE Alu 1 309 0 204 97 0 0 chrX 100017383 100017414 -76956726 + (CAATT)n Simple_repeat Simple_repeat 3 33 0 198 0 0 0 chrX 100020808 100020830 -76953310 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 263 355 19 0 chrX 100021870 100021977 -76952163 + MIR SINE MIR 39 147 -61 23 0 0 0 chrX 100022039 100022062 -76952078 + AT_rich Low_complexity Low_complexity 1 23 0 440 318 40 8 chrX 100022583 100022709 -76951431 + L2 LINE L2 3178 3307 -6 681 260 46 41 chrX 100024606 100024825 -76949315 - MIR SINE MIR -12 250 31 440 273 20 80 chrX 100025855 100026126 -76948014 + MIR3 SINE MIR 8 258 -4 329 165 0 63 chrX 100026063 100026142 -76947998 + L2 LINE L2 3240 3313 0 * 441 240 27 112 chrX 100027306 100027364 -76946776 + MIR SINE MIR 33 94 -168 1998 138 7 13 chrX 100027364 100027668 -76946472 + AluJb SINE Alu 1 302 -10 441 240 27 112 chrX 100027668 100027797 -76946343 + MIR SINE MIR 94 204 -58 620 259 112 43 chrX 100029331 100029583 -76944557 - MIR SINE MIR 0 262 6 317 314 17 42 chrX 100029791 100029909 -76944231 + MIR SINE MIR 23 137 -71 591 310 11 16 chrX 100030443 100030627 -76943513 - MIR3 SINE MIR -23 185 3 451 263 137 41 chrX 100030700 100030895 -76943245 - MIR3 SINE MIR -19 243 34 515 276 115 6 chrX 100031056 100031212 -76942928 - MIR3 SINE MIR -16 192 20 302 146 0 0 chrX 100032247 100032295 -76941845 - L2 LINE L2 -4 3309 3262 278 229 19 48 chrX 100032952 100033057 -76941083 - MIR3 SINE MIR -104 104 3 201 213 0 0 chrX 100033910 100033957 -76940183 + (CA)n Simple_repeat Simple_repeat 1 47 0 734 272 4 60 chrX 100034509 100034777 -76939363 - MIR SINE MIR -6 256 8 2417 80 0 0 chrX 100034850 100035150 -76938990 + AluSc SINE Alu 2 301 -8 228 137 0 59 chrX 100036373 100036424 -76937716 + (GGAGAA)n Simple_repeat Simple_repeat 6 53 0 454 237 144 29 chrX 100037285 100037424 -76936716 - MIR3 SINE MIR -6 202 48 1050 160 0 45 chrX 100038289 100038489 -76935651 + AluSg/x SINE Alu 122 312 0 246 206 0 0 chrX 100040370 100040438 -76933702 + (CA)n Simple_repeat Simple_repeat 2 69 0 227 309 0 44 chrX 100041586 100041654 -76932486 - L2 LINE L2 -1 3312 3248 684 268 36 0 chrX 100042131 100042299 -76931841 + MIR3 SINE MIR 28 201 -7 189 221 39 125 chrX 100042671 100042775 -76931365 + MIR SINE MIR 122 216 -46 2164 122 20 0 chrX 100043023 100043149 -76930991 + AluSx SINE Alu 1 123 -189 333 0 0 0 chrX 100043149 100043186 -76930954 + (CA)n Simple_repeat Simple_repeat 2 38 0 2164 122 20 0 chrX 100043186 100043363 -76930777 + AluSx SINE Alu 123 310 -2 834 195 0 0 chrX 100043422 100043550 -76930590 - FLAM_C SINE Alu -4 129 2 1040 147 0 0 chrX 100043968 100044111 -76930029 + FAM SINE Alu 4 146 -39 2336 96 3 16 chrX 100047866 100048178 -76925962 - AluSg SINE Alu -2 308 1 905 70 78 0 chrX 100048768 100048897 -76925243 + MER85 DNA T2_type 1 139 0 299 313 16 31 chrX 100049175 100049303 -76924837 + L3b LINE CR1 1345 1470 -113 383 162 15 0 chrX 100050381 100050449 -76923691 + MER113 DNA MER1_type? 453 521 0 276 291 189 14 chrX 100051034 100051182 -76922958 + L3 LINE CR1 1351 1524 -53 309 339 8 8 chrX 100051568 100051692 -76922448 + C-rich Low_complexity Low_complexity 1 124 0 1248 116 97 29 chrX 100051802 100052009 -76922131 + AluJb SINE Alu 85 305 -7 2013 94 73 21 chrX 100052840 100053126 -76921014 - AluSx SINE Alu -11 301 1 580 308 11 32 chrX 100053339 100053539 -76920601 - MIR3 SINE MIR 0 208 14 530 303 27 27 chrX 100054362 100054550 -76919590 + MIR3 SINE MIR 16 203 -5 200 262 49 0 chrX 100055067 100055128 -76919012 - MIR SINE MIR -56 152 89 276 287 69 30 chrX 100055977 100056078 -76918062 + L2 LINE L2 3104 3208 -64 646 302 6 0 chrX 100056598 100056777 -76917363 - L3b LINE CR1 -151 1432 1253 2476 87 7 0 chrX 100056807 100057116 -76917024 - AluSq SINE Alu -2 311 1 186 231 0 154 chrX 100057119 100057236 -76916904 - L3b LINE CR1 -315 1268 1170 424 314 63 55 chrX 100058031 100058286 -76915854 + L2 LINE L2 3015 3271 -1 269 217 0 0 chrX 100059622 100059682 -76914458 + T-rich Low_complexity Low_complexity 1 60 0 280 236 0 0 chrX 100061100 100061155 -76912985 + L3b LINE CR1 1285 1339 -244 3154 113 49 17 chrX 100063088 100063621 -76910519 + L1MB4 LINE L1 5626 6175 -5 279 0 0 0 chrX 100063677 100063708 -76910432 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 268 0 12 chrX 100064138 100064220 -76909920 - MER113 DNA MER1_type? 0 521 441 289 257 14 0 chrX 100064922 100064992 -76909148 - MER81 DNA DNA -1 113 43 475 238 148 69 chrX 100065155 100065264 -76908876 + MIR SINE MIR 57 156 -106 2201 113 0 0 chrX 100065264 100065583 -76908557 + AluSx SINE Alu 1 319 0 475 238 148 69 chrX 100065583 100065661 -76908479 + MIR SINE MIR 156 260 -2 1195 143 0 23 chrX 100066530 100066710 -76907430 + AluJo SINE Alu 10 180 -132 15115 155 23 41 chrX 100116711 100120195 -76853945 - L1PA15-16 LINE L1 -2828 4021 604 1367 131 0 0 chrX 100120195 100120386 -76853754 - L1PA15-16 LINE L1 -6647 202 12 2071 101 18 0 chrX 100120471 100120748 -76853392 + AluSx SINE Alu 1 282 -30 258 153 0 0 chrX 100120750 100120809 -76853331 + CT-rich Low_complexity Low_complexity 2 60 0 30 0 0 0 chrX 100120809 100120839 -76853301 + AT_rich Low_complexity Low_complexity 1 30 0 766 148 39 8 chrX 100120839 100120967 -76853173 - MSTB LTR MaLR -80 346 215 432 312 52 6 chrX 100120973 100121146 -76852994 + L2 LINE L2 1839 2019 -1295 990 178 22 6 chrX 100121146 100121326 -76852814 - L1MD1 LINE L1 0 6242 6060 744 240 7 82 chrX 100121332 100121453 -76852687 - L1M4 LINE L1 -1015 5131 5041 2517 84 0 0 chrX 100121453 100121761 -76852379 - AluSc SINE Alu -1 308 1 744 240 7 82 chrX 100121761 100121918 -76852222 - L1M4 LINE L1 -1105 5041 4874 276 161 71 0 chrX 100121937 100121993 -76852147 - L1M4 LINE L1 -1367 4779 4720 182 234 85 0 chrX 100121993 100122040 -76852100 + L2 LINE L2 3185 3235 -37 7161 113 27 14 chrX 100122092 100123287 -76850853 - L1PB1 LINE L1 -1 6866 5689 9606 42 2 1 chrX 100123287 100124357 -76849783 - MER11C LTR ERVK 0 1071 1 7161 113 27 14 chrX 100124357 100125176 -76848964 - L1PB1 LINE L1 -1178 5689 1 312 153 0 0 chrX 100125228 100125287 -76848853 - Alu SINE Alu -1 301 243 185 0 0 39 chrX 100125289 100125315 -76848825 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 848 209 105 7 chrX 100125316 100125469 -76848671 - FAM SINE Alu -6 169 2 1153 175 25 10 chrX 100125539 100125739 -76848401 + MER3 DNA MER1_type 5 207 -2 528 384 88 14 chrX 100125741 100126319 -76847821 - L2 LINE L2 -2505 809 189 510 115 35 0 chrX 100126518 100126605 -76847535 - L1MB4 LINE L1 0 6180 6091 465 217 118 33 chrX 100126912 100127064 -76847076 + MIR SINE MIR 97 261 -1 555 252 98 0 chrX 100127310 100127453 -76846687 + MIR SINE MIR 17 173 -89 222 215 0 15 chrX 100127501 100127554 -76846586 + (TTA)n Simple_repeat Simple_repeat 3 56 -10 2592 121 77 46 chrX 100127554 100127969 -76846171 + MSTA LTR MaLR 1 428 0 222 215 0 15 chrX 100127969 100127980 -76846160 + (TTA)n Simple_repeat Simple_repeat 56 66 0 213 238 0 0 chrX 100128924 100128966 -76845174 - L2 LINE L2 -11 3302 3261 731 47 0 0 chrX 100129159 100129245 -76844895 + L1PA4 LINE L1 11 96 -6050 38215 51 4 1 chrX 100129245 100134765 -76839375 + L1PA4 LINE L1 623 6155 0 2335 177 14 36 chrX 100134940 100135325 -76838815 + MLT2D LTR ERVL 1 378 -36 474 18 0 0 chrX 100135325 100135380 -76838760 + (CA)n Simple_repeat Simple_repeat 2 56 0 2335 177 14 36 chrX 100135380 100135413 -76838727 + MLT2D LTR ERVL 378 410 -4 330 314 155 19 chrX 100135451 100135658 -76838482 + MIR SINE MIR 28 262 0 223 282 129 35 chrX 100136404 100136489 -76837651 - L2 LINE L2 -4 3309 3217 278 250 99 62 chrX 100136975 100137167 -76836973 - L1ME4a LINE L1 0 6121 5923 2301 101 0 0 chrX 100137521 100137829 -76836311 - AluY SINE Alu -3 308 1 258 346 0 0 chrX 100140031 100140138 -76834002 + G-rich Low_complexity Low_complexity 1 107 0 1345 146 5 32 chrX 100141746 100141965 -76832175 - MER20 DNA MER1_type 0 219 7 2144 106 36 7 chrX 100142235 100142536 -76831604 - AluSx SINE Alu -2 310 1 444 255 165 1 chrX 100143837 100144000 -76830140 - MIR SINE MIR -63 145 8 317 221 173 31 chrX 100143983 100144110 -76830030 - MIR SINE MIR -28 234 90 * 342 0 0 0 chrX 100145216 100145254 -76828886 + (CA)n Simple_repeat Simple_repeat 2 39 0 1579 278 52 67 chrX 100147022 100147862 -76826278 + L2 LINE L2 2269 3102 -211 1527 78 0 10 chrX 100147862 100148054 -76826086 - AluY SINE Alu -24 287 98 1579 278 52 67 chrX 100148054 100148255 -76825885 + L2 LINE L2 3102 3305 -8 440 229 109 69 chrX 100148289 100148419 -76825721 - MIR SINE MIR -13 249 109 1018 213 23 0 chrX 100148419 100148593 -76825547 + MER45A DNA AcHobo 1 178 0 440 229 109 69 chrX 100148593 100148637 -76825503 - MIR SINE MIR -153 109 68 336 190 0 176 chrX 100148749 100148891 -76825249 - MER103 DNA DNA -48 118 2 1015 208 102 0 chrX 100148969 100149166 -76824974 - MER58A DNA MER1_type -4 220 4 1768 184 3 7 chrX 100149741 100150035 -76824105 + AluJb SINE Alu 1 293 -19 302 271 123 77 chrX 100151497 100151652 -76822488 + MIR3 SINE MIR 37 198 -10 239 147 0 0 chrX 100151652 100151686 -76822454 + MER5B DNA MER1_type 1 34 -144 264 330 40 0 chrX 100151798 100151898 -76822242 + MLT1H LTR MaLR 58 161 -388 241 177 13 114 chrX 100152138 100152217 -76821923 + MLT1H LTR MaLR 479 549 0 284 222 16 16 chrX 100152232 100152295 -76821845 + L2 LINE L2 3251 3313 0 8760 23 0 2 chrX 100152325 100153532 -76820608 - L1P1 LINE L1 -574 5581 4376 4441 37 0 10 chrX 100153532 100154044 -76820096 + L1PA3 LINE L1 5649 6155 0 8760 23 0 2 chrX 100154044 100154058 -76820082 - L1P1 LINE L1 -1779 4376 4363 396 250 33 0 chrX 100154073 100154165 -76819975 + MER5B DNA MER1_type 83 177 -1 588 327 71 13 chrX 100154200 100154426 -76819714 + MIR SINE MIR 9 247 -15 696 270 62 5 chrX 100154489 100154700 -76819440 + MIR SINE MIR 30 252 -10 426 275 78 7 chrX 100154958 100155100 -76819040 + L2 LINE L2 2168 2319 -995 273 263 12 12 chrX 100155348 100155428 -76818712 + LTR67 LTR ERVL 472 551 -6 460 356 20 0 chrX 100155690 100155839 -76818301 - MER91A DNA MER1_type -43 153 2 1001 104 0 32 chrX 100155885 100156039 -76818101 - L1MA9 LINE L1 0 6312 6164 3035 116 29 2 chrX 100156039 100156454 -76817686 + MSTB LTR MaLR 1 426 0 4689 192 21 3 chrX 100156454 100157329 -76816811 + MSTB-int LTR MaLR 1 890 -761 242 224 0 0 chrX 100157330 100157379 -76816761 + Alu SINE Alu 252 300 -2 1792 172 6 21 chrX 100157379 100157716 -76816424 + L1MB7 LINE L1 5823 6154 -30 2305 141 30 82 chrX 100157776 100158250 -76815890 + L1MB3 LINE L1 5727 6175 -8 * 6860 128 30 13 chrX 100158245 100160177 -76813963 + L1MA3 LINE L1 4337 6303 -2 413 277 53 53 chrX 100160185 100160373 -76813767 + L1M4 LINE L1 3106 3293 -2853 435 183 0 12 chrX 100160382 100160464 -76813676 + MLT2D LTR ERVL 149 229 -185 31381 115 11 61 chrX 100160470 100163877 -76810263 + L1PA8 LINE L1 9 2921 -3251 2397 88 0 3 chrX 100163877 100164182 -76809958 + AluY SINE Alu 1 304 -7 31381 115 11 61 chrX 100164182 100167264 -76806876 + L1PA8 LINE L1 2921 6157 -15 396 273 108 50 chrX 100167491 100167855 -76806285 + L1M4 LINE L1 3346 3733 -2413 286 281 31 48 chrX 100167952 100168094 -76806046 - MER20 DNA MER1_type -144 75 1 272 278 52 40 chrX 100168094 100168267 -76805873 + L1M4 LINE L1 3696 3870 -2276 * 744 237 12 44 chrX 100168256 100168532 -76805608 + L1MC4 LINE L1 6995 7218 -743 1702 154 10 24 chrX 100168686 100168979 -76805161 - AluJb SINE Alu -12 300 12 715 250 87 78 chrX 100168988 100169198 -76804942 + L1MC5 LINE L1 7319 7526 -435 2454 55 0 0 chrX 100169198 100169525 -76804615 + AluY SINE Alu 1 311 0 715 250 87 78 chrX 100169525 100169902 -76804238 + L1MC5 LINE L1 7526 7911 -50 1745 146 0 42 chrX 100170027 100170335 -76803805 - AluJo SINE Alu -1 311 17 708 325 48 5 chrX 100170348 100170975 -76803165 + L1M4 LINE L1 3950 4603 -1543 21 0 0 0 chrX 100171092 100171113 -76803027 + AT_rich Low_complexity Low_complexity 1 21 0 9075 81 7 24 chrX 100171161 100177278 -76796862 + L1PA6 LINE L1 11 6154 0 26 0 0 0 chrX 100177690 100177716 -76796424 + AT_rich Low_complexity Low_complexity 1 26 0 535 288 114 11 chrX 100177945 100178129 -76796011 + MIR SINE MIR 60 262 0 2593 137 8 25 chrX 100178276 100178752 -76795388 - L1PA13 LINE L1 -3 6160 5693 341 250 0 10 chrX 100178752 100178848 -76795292 + L1ME LINE L1 5728 5822 -299 740 161 0 0 chrX 100178852 100178970 -76795170 + AluJb SINE Alu 1 118 -194 25 0 0 0 chrX 100178980 100179005 -76795135 + AT_rich Low_complexity Low_complexity 1 25 0 310 222 40 10 chrX 100179082 100179181 -76794959 + (TA)n Simple_repeat Simple_repeat 1 102 0 1908 163 0 7 chrX 100179247 100179542 -76794598 - AluJb SINE Alu -19 293 1 608 294 123 79 chrX 100179632 100179920 -76794220 + L2 LINE L2 2836 3153 -160 2209 107 13 0 chrX 100179920 100180220 -76793920 - AluSq SINE Alu -9 304 1 608 294 123 79 chrX 100180220 100180387 -76793753 + L2 LINE L2 3153 3311 -2 438 182 162 14 chrX 100180921 100181069 -76793071 - MIR SINE MIR -8 254 85 403 238 0 79 chrX 100182538 100182664 -76791476 - MIR SINE MIR -145 117 2 223 270 130 30 chrX 100182676 100182776 -76791364 - L2 LINE L2 -615 2699 2590 329 131 16 0 chrX 100182971 100183032 -76791108 + (TA)n Simple_repeat Simple_repeat 2 63 0 483 203 198 48 chrX 100183054 100183151 -76790989 - MIR SINE MIR -12 250 169 1888 148 0 0 chrX 100183151 100183459 -76790681 + AluSx SINE Alu 1 308 0 483 203 198 48 chrX 100183459 100183546 -76790594 - MIR SINE MIR -93 169 36 208 43 0 85 chrX 100183622 100183669 -76790471 + (CGGGGG)n Simple_repeat Simple_repeat 4 46 0 292 343 14 0 chrX 100184287 100184433 -76789707 + (CA)n Simple_repeat Simple_repeat 1 148 0 490 266 0 0 chrX 100185433 100185546 -76788594 + MIR SINE MIR 142 254 -8 522 217 142 8 chrX 100185581 100185701 -76788439 + L2 LINE L2 3137 3272 0 279 250 83 12 chrX 100186272 100186356 -76787784 - MIR3 SINE MIR -19 189 100 2939 196 14 21 chrX 100186600 100187166 -76786974 + REP3 LTR ERV 1 562 0 276 221 0 44 chrX 100187871 100187939 -76786201 - L2 LINE L2 0 3272 3208 492 284 43 19 chrX 100190286 100190497 -76783643 + MARNA DNA Mariner 225 440 -146 432 262 90 8 chrX 100190661 100190783 -76783357 - L2 LINE L2 0 3272 3141 532 279 58 23 chrX 100190796 100190968 -76783172 - MER5A DNA MER1_type -11 178 1 214 323 116 13 chrX 100191406 100191561 -76782579 - L2 LINE L2 -450 2864 2694 621 261 75 35 chrX 100191674 100191873 -76782267 - MIR SINE MIR -7 255 49 215 271 169 25 chrX 100192102 100192220 -76781920 + L2 LINE L2 3179 3313 0 228 255 20 29 chrX 100193165 100193267 -76780873 + (TA)n Simple_repeat Simple_repeat 1 101 0 353 289 121 24 chrX 100195720 100195886 -76778254 + MLT1J LTR MaLR 236 417 -94 527 267 74 23 chrX 100196904 100197080 -76777060 - MIR3 SINE MIR -8 200 16 4326 222 91 75 chrX 100197998 100200126 -76774014 + L1MC4 LINE L1 5789 8042 0 1676 288 125 11 chrX 100200763 100201417 -76772723 + L3 LINE CR1 607 1335 -242 533 272 69 73 chrX 100201431 100201677 -76772463 + MIR SINE MIR 18 262 0 * 841 279 68 0 chrX 100201676 100201898 -76772242 + L3 LINE CR1 1341 1577 0 2221 99 0 0 chrX 100203702 100203984 -76770156 - AluSq SINE Alu -31 282 1 324 202 174 18 chrX 100204026 100204135 -76770005 + MIR SINE MIR 122 247 -15 24 85 0 0 chrX 100204595 100204654 -76769486 + AT_rich Low_complexity Low_complexity 1 59 0 1790 132 37 40 chrX 100205272 100205568 -76768572 - AluSx SINE Alu -17 295 1 265 289 124 41 chrX 100205634 100205755 -76768385 + L2 LINE L2 3137 3267 -5 651 283 56 12 chrX 100205776 100206027 -76768113 - MIR SINE MIR 0 262 1 260 350 0 31 chrX 100206065 100206162 -76767978 + MER5B DNA MER1_type 1 94 -84 510 325 68 43 chrX 100206571 100206851 -76767289 - L2 LINE L2 -1 3271 2985 495 348 50 0 chrX 100206903 100207084 -76767056 - L2 LINE L2 -493 2821 2632 309 255 75 21 chrX 100207162 100207256 -76766884 + L1ME LINE L1 5352 5450 -720 364 333 32 13 chrX 100207331 100207487 -76766653 + L1ME LINE L1 5548 5706 -415 245 305 61 6 chrX 100207497 100207661 -76766479 + L1ME LINE L1 5740 5912 -209 721 304 70 27 chrX 100208103 100208504 -76765636 - L2 LINE L2 -1067 2247 1830 563 215 59 73 chrX 100208513 100208732 -76765408 + HAL1 LINE L1 10 225 -2282 263 289 87 0 chrX 100208760 100208864 -76765276 + HAL1 LINE L1 347 459 -2048 1685 254 74 47 chrX 100208897 100209679 -76764461 + HAL1 LINE L1 575 1377 -1130 2026 121 0 0 chrX 100209690 100209962 -76764178 + AluSx SINE Alu 2 273 -39 645 128 0 0 chrX 100209972 100210074 -76764066 + (GGAAA)n Simple_repeat Simple_repeat 4 105 0 665 202 139 106 chrX 100210085 100210152 -76763988 + HAL1 LINE L1 1391 1454 -1053 4794 135 20 2 chrX 100210152 100210965 -76763175 + L1MA7 LINE L1 5463 6289 -2 665 202 139 106 chrX 100210965 100211199 -76762941 + HAL1 LINE L1 1454 1702 -805 4142 217 15 30 chrX 100211230 100211967 -76762173 + L1MEc LINE L1 247 964 -5432 1457 196 61 4 chrX 100211967 100212247 -76761893 - AluJo SINE Alu -16 296 1 4142 217 15 30 chrX 100212247 100212593 -76761547 + L1MEc LINE L1 964 1314 -5082 375 215 25 16 chrX 100212609 100212730 -76761410 + HAL1 LINE L1 2272 2393 -114 1086 258 12 0 chrX 100212733 100212973 -76761167 + MIR SINE MIR 19 261 -1 229 207 12 49 chrX 100212996 100213078 -76761062 + HAL1 LINE L1 2426 2504 -3 1203 346 95 43 chrX 100213093 100213957 -76760183 - L2 LINE L2 -1493 1821 879 2199 135 0 0 chrX 100213957 100214268 -76759872 + AluSx SINE Alu 1 311 -1 1203 346 95 43 chrX 100214268 100214572 -76759568 - L2 LINE L2 -2435 879 592 270 203 209 20 chrX 100215640 100215788 -76758352 - L1ME4a LINE L1 -3 6118 5943 214 401 33 26 chrX 100216082 100216354 -76757786 + L2 LINE L2 2424 2697 -617 562 191 56 2 chrX 100216469 100216613 -76757527 - L1ME3 LINE L1 0 6170 6019 756 254 60 5 chrX 100217669 100217870 -76756270 - MIR SINE MIR -3 259 48 910 281 26 4 chrX 100218597 100218825 -76755315 - MIR SINE MIR -28 234 2 601 342 53 48 chrX 100218922 100219317 -76754823 + L2 LINE L2 2875 3271 -1 257 344 79 19 chrX 100219329 100219544 -76754596 + L2 LINE L2 2281 2508 -806 777 100 0 0 chrX 100219596 100219696 -76754444 + HY3 scRNA scRNA 1 100 -1 180 252 0 150 chrX 100219736 100219863 -76754277 + L2 LINE L2 2582 2689 -625 199 250 17 33 chrX 100219876 100219936 -76754204 - L2 LINE L2 -5 3267 3209 195 100 0 0 chrX 100221650 100221680 -76752460 + (AGGGGG)n Simple_repeat Simple_repeat 3 32 0 23 0 0 0 chrX 100221920 100221943 -76752197 + AT_rich Low_complexity Low_complexity 1 23 0 312 283 37 179 chrX 100222104 100222507 -76751633 - L2 LINE L2 -9 3263 2918 205 175 0 0 chrX 100223119 100223159 -76750981 + (CA)n Simple_repeat Simple_repeat 1 40 0 1097 223 28 24 chrX 100223749 100223996 -76750144 - MIR SINE MIR -1 261 14 243 88 0 0 chrX 100223996 100224030 -76750110 + (TG)n Simple_repeat Simple_repeat 1 34 0 233 229 16 0 chrX 100224092 100224153 -76749987 - L1ME4a LINE L1 -92 6029 5968 1948 111 3 62 chrX 100224462 100224769 -76749371 - AluSx SINE Alu -13 299 11 478 324 34 0 chrX 100224895 100225071 -76749069 - MIR3 SINE MIR -7 201 20 2135 244 62 45 chrX 100225123 100225844 -76748296 + L1MD2 LINE L1 5607 6343 -16 729 214 112 9 chrX 100225961 100225977 -76748163 + L2 LINE L2 3077 3090 -223 336 24 0 0 chrX 100225977 100226018 -76748122 + (CA)n Simple_repeat Simple_repeat 1 41 0 729 214 112 9 chrX 100226018 100226216 -76747924 + L2 LINE L2 3090 3313 0 257 283 74 124 chrX 100226584 100226842 -76747298 - L2 LINE L2 -14 3258 3014 301 240 210 10 chrX 100226869 100226969 -76747171 + L2 LINE L2 3152 3271 -1 232 277 128 0 chrX 100227008 100227102 -76747038 - MIR SINE MIR -44 218 113 296 255 128 49 chrX 100227807 100227909 -76746231 - L2 LINE L2 -7 3306 3197 390 296 190 16 chrX 100228122 100228375 -76745765 - L2 LINE L2 -440 2874 2578 329 295 0 13 chrX 100228483 100228561 -76745579 - MIR SINE MIR -112 96 20 2177 124 10 3 chrX 100229264 100229563 -76744577 + AluSx SINE Alu 1 301 -11 44279 45 3 1 chrX 100229578 100235122 -76739018 + L1P2 LINE L1 1 5554 -601 537 329 32 0 chrX 100235170 100235328 -76738812 - MIR SINE MIR -98 164 2 186 178 260 0 chrX 100235331 100235404 -76738736 - L3 LINE CR1 -96 1481 1390 957 274 47 25 chrX 100235406 100235723 -76738417 - L3 LINE CR1 -884 693 370 230 202 46 150 chrX 100236000 100236173 -76737967 + L2 LINE L2 2932 3086 -186 225 200 0 0 chrX 100236191 100236231 -76737909 + L2 LINE L2 3217 3256 -16 331 200 13 40 chrX 100236345 100236420 -76737720 - L2 LINE L2 0 3313 3241 300 284 37 0 chrX 100236447 100236528 -76737612 + L2 LINE L2 3186 3269 -3 609 275 21 21 chrX 100236539 100236728 -76737412 + MER5A DNA MER1_type 1 189 0 467 252 93 68 chrX 100238453 100238763 -76735377 - HAL1 LINE L1 -8 2499 2182 2064 169 64 0 chrX 100238775 100239119 -76735021 + MER47A DNA MER2_type 1 366 0 940 272 66 41 chrX 100239143 100239463 -76734677 - MLT1I LTR MaLR -10 399 72 333 293 12 85 chrX 100239580 100239744 -76734396 - HAL1b LINE L1 -460 888 737 1662 172 3 28 chrX 100239796 100240114 -76734026 + AluSx SINE Alu 1 311 0 2162 93 17 10 chrX 100240267 100240557 -76733583 - AluSg SINE Alu -17 293 2 356 259 165 32 chrX 100240569 100240624 -76733516 - HAL1 LINE L1 -605 1902 1856 920 183 25 120 chrX 100240624 100240865 -76733275 - MER20 DNA MER1_type 0 219 2 356 259 165 32 chrX 100240865 100240967 -76733173 - HAL1 LINE L1 -651 1856 1724 1904 144 182 19 chrX 100240967 100241335 -76732805 - MSTA LTR MaLR 0 428 1 1996 132 6 36 chrX 100241335 100241668 -76732472 - MSTA-int LTR MaLR 0 1651 1329 286 245 59 10 chrX 100241668 100241770 -76732370 - HAL1 LINE L1 -1209 1298 1192 340 229 0 0 chrX 100241776 100241837 -76732303 + MLT1L LTR MaLR 140 200 -415 576 306 39 24 chrX 100242003 100242258 -76731882 + MLT1L LTR MaLR 349 607 -8 2811 94 71 5 chrX 100242258 100242650 -76731490 + L1PA10 LINE L1 5732 6149 -19 180 0 0 0 chrX 100242650 100242670 -76731470 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 189 0 0 0 chrX 100242878 100242899 -76731241 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 616 296 132 5 chrX 100242934 100243154 -76730986 - MIR SINE MIR -14 248 1 5785 167 72 53 chrX 100243718 100244963 -76729177 + L1MB8 LINE L1 3865 5085 -1093 1908 163 7 0 chrX 100244963 100245258 -76728882 + AluSx SINE Alu 1 297 -15 5785 167 72 53 chrX 100245258 100245772 -76728368 + L1MB8 LINE L1 5085 5682 -496 1923 152 58 19 chrX 100245772 100246133 -76728007 - L1PA16 LINE L1 0 6166 5792 5785 167 72 53 chrX 100246133 100246493 -76727647 + L1MB8 LINE L1 5682 6034 -144 1912 141 10 7 chrX 100246494 100246784 -76727356 - AluSx SINE Alu -15 297 7 1696 179 0 3 chrX 100246834 100247147 -76726993 + AluJb SINE Alu 1 312 0 1810 284 26 15 chrX 100247159 100247807 -76726333 - L2 LINE L2 -1114 2200 1546 605 271 35 49 chrX 100247836 100248039 -76726101 - L2 LINE L2 -2063 1251 1052 534 181 6 102 chrX 100248064 100248171 -76725969 + L1P LINE L1 5193 5278 -868 2039 122 17 10 chrX 100248171 100248466 -76725674 + AluJb SINE Alu 2 298 -14 534 181 6 102 chrX 100248466 100248535 -76725605 + L1P LINE L1 5278 5352 -794 274 180 0 0 chrX 100248528 100248578 -76725562 - L1MC4 LINE L1 -1515 6527 6478 * 737 152 18 0 chrX 100248591 100248703 -76725437 - BC200 scRNA scRNA -85 115 2 28 29 0 0 chrX 100248916 100248951 -76725189 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chrX 100249062 100249097 -76725043 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1994 125 0 4 chrX 100249098 100249377 -76724763 - AluSx SINE Alu -34 278 1 2386 42 0 11 chrX 100249425 100249736 -76724404 - AluY SINE Alu 0 308 1 25 0 0 0 chrX 100249854 100249879 -76724261 + AT_rich Low_complexity Low_complexity 1 25 0 262 321 114 93 chrX 100250016 100250359 -76723781 + L2 LINE L2 2830 3179 -93 207 307 189 0 chrX 100250767 100250894 -76723246 + MER5B DNA MER1_type 2 152 -26 394 197 0 0 chrX 100250969 100251035 -76723105 - MER2 DNA MER2_type 0 345 280 922 114 0 23 chrX 100251039 100251171 -76722969 + FLAM_C SINE Alu 1 129 -14 1774 124 42 4 chrX 100251174 100251439 -76722701 - MER2 DNA MER2_type -70 275 1 352 265 31 0 chrX 100251474 100251572 -76722568 - MER5A DNA MER1_type -79 110 10 309 262 103 27 chrX 100251572 100251692 -76722448 + MIR SINE MIR 6 135 -73 860 151 0 0 chrX 100251723 100251849 -76722291 - FLAM_C SINE Alu -17 126 1 187 214 125 0 chrX 100251850 100251906 -76722234 + MIR SINE MIR 123 185 -77 288 286 0 24 chrX 100252079 100252163 -76721977 + MIR SINE MIR 173 254 -8 1934 119 24 10 chrX 100252169 100252462 -76721678 - AluJb SINE Alu -15 297 1 414 154 62 0 chrX 100253026 100253091 -76721049 - AluS SINE Alu -243 70 2 412 195 0 12 chrX 100253093 100253175 -76720965 - L1MC5 LINE L1 -175 7786 7706 297 174 0 43 chrX 100253219 100253311 -76720829 - L1MC5 LINE L1 -271 7690 7603 2256 64 7 0 chrX 100253312 100253642 -76720498 + AluY SINE Alu 2 333 0 808 268 153 42 chrX 100253769 100253978 -76720162 - L3 LINE CR1 -82 1495 1311 2261 170 45 55 chrX 100253978 100254448 -76719692 - MLT1C LTR MaLR -2 465 1 808 268 153 42 chrX 100254448 100254531 -76719609 - L3 LINE CR1 -266 1311 1239 1800 166 10 13 chrX 100254531 100254838 -76719302 - AluJo SINE Alu -6 306 1 808 268 153 42 chrX 100254838 100255022 -76719118 - L3 LINE CR1 -338 1239 965 575 243 17 184 chrX 100255205 100255394 -76718746 - L2 LINE L2 -8 3264 3178 1737 159 3 14 chrX 100255394 100255677 -76718463 + AluJo SINE Alu 1 280 -32 575 243 17 184 chrX 100255677 100255895 -76718245 - L2 LINE L2 -94 3178 2925 4699 143 8 24 chrX 100255965 100256704 -76717436 - LTR8A LTR ERV1 0 727 1 199 263 126 21 chrX 100256774 100256869 -76717271 - L2 LINE L2 -585 2729 2625 487 273 165 13 chrX 100256942 100257311 -76716829 - L2 LINE L2 -816 2498 2000 5500 102 13 4 chrX 100257378 100258129 -76716011 + L1PA11 LINE L1 5414 6171 -3 357 308 46 15 chrX 100258133 100258263 -76715877 - L3 LINE CR1 -1108 469 336 470 281 132 79 chrX 100258300 100258425 -76715715 - L2 LINE L2 -1 3312 3195 757 251 115 8 chrX 100258425 100258660 -76715480 + MIR SINE MIR 3 262 0 470 281 132 79 chrX 100258660 100258875 -76715265 - L2 LINE L2 -118 3195 2954 1040 175 122 0 chrX 100258877 100259066 -76715074 + MER58A DNA MER1_type 13 224 0 260 308 131 0 chrX 100259067 100259174 -76714966 - L2 LINE L2 -350 2964 2844 223 368 81 76 chrX 100259172 100259395 -76714745 - L3 LINE CR1 -1319 258 35 * 315 146 0 0 chrX 100259585 100259640 -76714500 + (CA)n Simple_repeat Simple_repeat 2 56 0 647 196 46 13 chrX 100259740 100259893 -76714247 + MER103 DNA DNA 2 159 -7 1746 277 184 23 chrX 100260162 100261276 -76712864 - L2 LINE L2 -5 3308 2015 1501 166 20 12 chrX 100261487 100261740 -76712400 + MSTA LTR MaLR 1 255 -173 358 118 0 0 chrX 100261735 100261786 -76712354 + MSTA LTR MaLR 378 428 0 * 10176 148 44 6 chrX 100261786 100263377 -76710763 + MSTA-int LTR MaLR 1 1651 0 2514 166 43 12 chrX 100263377 100263792 -76710348 + MSTA LTR MaLR 1 428 0 1470 150 0 38 chrX 100265250 100265490 -76708650 - AluSg/x SINE Alu -10 302 72 406 80 0 0 chrX 100265641 100265691 -76708449 - Alu SINE Alu -261 51 2 731 175 7 70 chrX 100265750 100265893 -76708247 - AluJo SINE Alu -176 136 3 1210 133 58 49 chrX 100265969 100266006 -76708134 - L1MB4 LINE L1 -2 6178 6143 2282 110 0 0 chrX 100266006 100266298 -76707842 - AluSc SINE Alu -17 292 1 1210 133 58 49 chrX 100266298 100266486 -76707654 - L1MB4 LINE L1 -37 6143 5951 398 314 89 40 chrX 100266502 100266852 -76707288 - L1MC4a LINE L1 -2 6119 5753 3586 170 27 37 chrX 100266898 100267593 -76706547 - L1MB2 LINE L1 -3 6168 5481 641 180 23 39 chrX 100267593 100267721 -76706419 - AluJb SINE Alu -175 137 12 335 41 20 0 chrX 100267738 100267787 -76706353 + (TG)n Simple_repeat Simple_repeat 1 50 0 1376 158 45 0 chrX 100267788 100268137 -76706003 - L1MB2 LINE L1 -716 5467 5107 308 83 21 0 chrX 100269049 100269097 -76705043 + (CA)n Simple_repeat Simple_repeat 1 49 0 391 290 132 96 chrX 100269579 100270248 -76703892 - L1M2 LINE L1 -5475 1374 534 2527 129 13 85 chrX 100271281 100271672 -76702468 + MSTA LTR MaLR 1 356 -72 1869 155 26 7 chrX 100271672 100271976 -76702164 - AluJb SINE Alu -2 310 1 2527 129 13 85 chrX 100271976 100272042 -76702098 + MSTA LTR MaLR 356 425 -3 1819 166 21 0 chrX 100272254 100272544 -76701596 - AluJb SINE Alu -16 296 1 346 301 62 34 chrX 100275886 100276032 -76698108 - MIR SINE MIR -70 192 43 291 178 0 122 chrX 100276577 100276667 -76697473 - MIR3 SINE MIR -6 202 124 38 0 0 0 chrX 100276775 100276813 -76697327 + AT_rich Low_complexity Low_complexity 1 38 0 1937 176 0 0 chrX 100277157 100277464 -76696676 - AluJb SINE Alu -5 307 1 228 279 0 16 chrX 100278166 100278227 -76695913 + MIR SINE MIR 3 62 -200 4753 151 40 25 chrX 100278242 100279563 -76694577 - L1MB7 LINE L1 -23 6161 4824 408 275 155 21 chrX 100279573 100279631 -76694509 + MIR SINE MIR 47 96 -166 2269 79 10 3 chrX 100279631 100279921 -76694219 - AluSc SINE Alu -17 292 1 408 275 155 21 chrX 100279921 100280004 -76694136 + MIR SINE MIR 96 207 -55 515 316 113 5 chrX 100281050 100281262 -76692878 + MIR SINE MIR 20 254 -8 237 271 35 12 chrX 100281573 100281658 -76692482 - L2 LINE L2 -938 2376 2290 230 200 57 57 chrX 100281658 100281728 -76692412 + L3 LINE CR1 1502 1571 -6 1644 166 7 32 chrX 100282195 100282503 -76691637 + AluJb SINE Alu 1 300 -12 2171 116 13 0 chrX 100282737 100283040 -76691100 - AluSg SINE Alu -3 307 1 252 0 0 0 chrX 100285364 100285392 -76688748 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 326 331 89 19 chrX 100286157 100286314 -76687826 - MIR3 SINE MIR -3 205 38 27 29 0 0 chrX 100287715 100287749 -76686391 + AT_rich Low_complexity Low_complexity 1 34 0 306 0 0 0 chrX 100288863 100288897 -76685243 + (CA)n Simple_repeat Simple_repeat 2 35 0 297 0 0 0 chrX 100288896 100288929 -76685211 + (TC)n Simple_repeat Simple_repeat 1 33 0 * 237 229 33 0 chrX 100288979 100289040 -76685100 + L3b LINE CR1 1107 1169 -414 216 225 34 56 chrX 100289087 100289176 -76684964 + (CTCA)n Simple_repeat Simple_repeat 3 89 0 449 313 50 16 chrX 100290340 100290522 -76683618 + L3b LINE CR1 1178 1365 -218 360 264 57 79 chrX 100290528 100290668 -76683472 - L2 LINE L2 0 3272 3136 516 337 84 19 chrX 100291038 100291406 -76682734 - L2 LINE L2 -2 3270 2879 381 58 0 0 chrX 100293536 100293588 -76680552 + (CA)n Simple_repeat Simple_repeat 2 53 0 389 280 88 36 chrX 100294578 100294828 -76679312 + L2 LINE L2 1759 2021 -1293 267 330 53 93 chrX 100294832 100295023 -76679117 + L2 LINE L2 2581 2778 -494 282 29 0 0 chrX 100295023 100295058 -76679082 + (CAA)n Simple_repeat Simple_repeat 2 36 0 267 330 53 93 chrX 100295058 100295209 -76678931 + L2 LINE L2 2778 2901 -371 2150 108 4 0 chrX 100295209 100295552 -76678588 - AluSq SINE Alu 0 354 11 267 330 53 93 chrX 100295552 100295683 -76678457 + L2 LINE L2 2901 3036 -236 1921 158 0 0 chrX 100296678 100296970 -76677170 - AluJo SINE Alu -20 292 1 21 0 0 0 chrX 100297128 100297149 -76676991 + AT_rich Low_complexity Low_complexity 1 21 0 378 308 106 20 chrX 100297191 100297389 -76676751 + MIR SINE MIR 33 247 -15 510 190 0 0 chrX 100297392 100297470 -76676670 + Tigger5 DNA MER2_type 1 78 -2245 449 187 0 0 chrX 100297470 100297545 -76676595 - Tigger5 DNA MER2_type -3 2320 2246 262 264 28 66 chrX 100297597 100297703 -76676437 + MIR SINE MIR 119 220 -42 184 313 0 0 chrX 100297818 100297866 -76676274 + L2 LINE L2 3252 3299 -14 439 328 45 25 chrX 100299300 100299498 -76674642 + MIR3 SINE MIR 4 205 -3 220 329 141 0 chrX 100300304 100300389 -76673751 - L2 LINE L2 -20 3252 3156 2276 94 3 3 chrX 100300652 100300951 -76673189 - AluSx SINE Alu -13 299 1 264 299 103 34 chrX 100301901 100302018 -76672122 - L2 LINE L2 -10 3262 3138 39 0 0 0 chrX 100302559 100302598 -76671542 + AT_rich Low_complexity Low_complexity 1 39 0 986 320 81 48 chrX 100303168 100303897 -76670243 - L2 LINE L2 -388 2926 2174 993 256 55 4 chrX 100304098 100304336 -76669804 - MIR SINE MIR 0 262 13 2123 116 0 0 chrX 100304708 100305015 -76669125 + AluSq SINE Alu 1 307 0 185 167 24 24 chrX 100305269 100305311 -76668829 + L3 LINE CR1 1396 1437 -140 462 204 191 20 chrX 100305347 100305499 -76668641 + MIR SINE MIR 78 255 -7 258 156 0 0 chrX 100305523 100305568 -76668572 + GA-rich Low_complexity Low_complexity 3 47 0 180 77 0 0 chrX 100305589 100305615 -76668525 + (TAG)n Simple_repeat Simple_repeat 1 26 0 532 306 75 15 chrX 100307266 100307465 -76666675 - MIR SINE MIR -32 230 20 712 258 86 5 chrX 100308325 100308523 -76665617 - MIR SINE MIR -46 216 3 495 0 0 0 chrX 100309793 100309848 -76664292 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 333 56 63 chrX 100309955 100310081 -76664059 - L2 LINE L2 -22 3250 3126 683 214 48 36 chrX 100310190 100310358 -76663782 - MIR SINE MIR -4 258 89 * 770 293 74 101 chrX 100310354 100310506 -76663634 - L2 LINE L2 -453 2861 2706 2158 83 0 40 chrX 100310506 100310831 -76663309 - AluSc SINE Alu 0 309 1 770 293 74 101 chrX 100310831 100311376 -76662764 - L2 LINE L2 -608 2706 2191 733 172 7 14 chrX 100311376 100311521 -76662619 + L1MB8 LINE L1 6033 6176 -2 770 293 74 101 chrX 100311521 100311724 -76662416 - L2 LINE L2 -1123 2191 1984 597 302 75 44 chrX 100312444 100313189 -76660951 - L1M4 LINE L1 -1099 5047 4280 374 301 65 11 chrX 100313242 100313420 -76660720 - L1M4 LINE L1 -1951 4195 4005 502 303 88 47 chrX 100313506 100313823 -76660317 - L1M4 LINE L1 -2298 3848 3519 351 245 148 70 chrX 100313916 100313984 -76660156 - L1M4 LINE L1 -2755 3391 3330 660 272 92 15 chrX 100313984 100314179 -76659961 - MER63A DNA MER1_type 0 210 1 351 245 148 70 chrX 100314179 100314408 -76659732 - L1M4 LINE L1 -2816 3330 3071 310 313 20 27 chrX 100314423 100314573 -76659567 - L1M4 LINE L1 -3126 3020 2872 1990 207 114 72 chrX 100314657 100315409 -76658731 - LTR1B LTR ERV1 -42 784 1 1971 193 26 0 chrX 100315411 100315759 -76658381 - LTR1B-int LTR ERV1 -1 7090 6734 * 30320 153 10 8 chrX 100315753 100322130 -76652010 - LTR1B-int LTR ERV1 -419 2669 75 2041 203 106 77 chrX 100322328 100323093 -76651047 - LTR1B LTR ERV1 -39 787 1 3270 141 141 39 chrX 100323360 100323496 -76650644 - LTR8A LTR ERV1 0 727 606 1836 162 51 0 chrX 100323496 100323792 -76650348 - AluJb SINE Alu -1 311 1 3270 141 141 39 chrX 100323792 100324315 -76649825 - LTR8A LTR ERV1 -121 606 1 314 239 86 47 chrX 100324347 100324495 -76649645 - L1MC/D LINE L1 -477 5644 5510 481 261 95 52 chrX 100325127 100325338 -76648802 + L1MC5 LINE L1 7562 7793 -168 6832 73 8 1 chrX 100325338 100326730 -76647410 + L1PA7 LINE L1 4753 6151 -3 481 261 95 52 chrX 100326730 100326844 -76647296 + L1MC5 LINE L1 7793 7901 -60 709 300 28 8 chrX 100327700 100327950 -76646190 - MIR SINE MIR -6 256 2 189 0 0 0 chrX 100328014 100328035 -76646105 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chrX 100328055 100328079 -76646061 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 558 258 16 47 chrX 100328115 100328305 -76645835 + MIR SINE MIR 29 212 -50 270 0 0 0 chrX 100328473 100328503 -76645637 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 5481 36 2 2 chrX 100328503 100329146 -76644994 - L1PA4 LINE L1 -12 6143 5501 194 88 0 29 chrX 100429835 100429869 -76544271 + (TTTAG)n Simple_repeat Simple_repeat 1 33 0 375 23 0 0 chrX 100431663 100431707 -76542433 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 0 0 0 chrX 100431707 100431738 -76542402 + (TA)n Simple_repeat Simple_repeat 2 32 0 469 304 9 0 chrX 100431905 100432020 -76542120 + L2 LINE L2 3156 3271 -1 207 250 54 18 chrX 100432099 100432155 -76541985 - L2 LINE L2 -5 3267 3210 2101 139 31 28 chrX 100433196 100433556 -76540584 - THE1B LTR MaLR 0 364 4 287 259 95 43 chrX 100433558 100433674 -76540466 - L2 LINE L2 -214 3058 2937 263 311 11 0 chrX 100434386 100434476 -76539664 + L1ME LINE L1 5559 5649 -521 970 158 5 65 chrX 100434483 100434698 -76539442 - MER3 DNA MER1_type 0 209 8 740 258 64 26 chrX 100437088 100437321 -76536819 - MIR SINE MIR -1 261 20 182 216 54 0 chrX 100437511 100437548 -76536592 - L2 LINE L2 -6 3307 3269 183 156 0 0 chrX 100438177 100438209 -76535931 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2912 148 34 44 chrX 100438212 100438799 -76535341 - L1MB5 LINE L1 -8 6166 5586 633 263 178 0 chrX 100438816 100439029 -76535111 + MIR SINE MIR 10 260 -2 213 246 0 0 chrX 100439226 100439291 -76534849 + (TA)n Simple_repeat Simple_repeat 2 66 0 575 319 60 21 chrX 100439396 100439631 -76534509 + MIR SINE MIR 2 245 -17 446 250 140 22 chrX 100440003 100440143 -76533997 - MIR SINE MIR -63 145 40 315 233 44 56 chrX 100440206 100440296 -76533844 - MIR SINE MIR -74 134 46 680 165 0 8 chrX 100440592 100440725 -76533415 + MLT2D LTR ERVL 1 132 -282 4582 176 25 1 chrX 100440728 100441657 -76532483 - L1PB4 LINE L1 -1409 4737 3787 5073 155 30 12 chrX 100441658 100443018 -76531122 + L1PB4 LINE L1 4767 6152 -4 1545 141 0 4 chrX 100443018 100443266 -76530874 + MLT2D LTR ERVL 112 358 -56 1690 176 24 0 chrX 100443268 100443598 -76530542 + MER7A DNA MER2_type 2 337 -9 249 143 0 24 chrX 100443669 100443711 -76530429 - L2 LINE L2 -29 3243 3203 606 261 39 88 chrX 100444777 100445037 -76529103 + L2 LINE L2 2247 2493 -821 1155 198 96 56 chrX 100445111 100445503 -76528637 - L1MC5 LINE L1 -51 7910 7486 4128 129 24 18 chrX 100445503 100446241 -76527899 - L1MA6 LINE L1 0 6300 5558 1155 198 96 56 chrX 100446241 100446420 -76527720 - L1MC5 LINE L1 -475 7486 7316 320 222 0 20 chrX 100446424 100446523 -76527617 + CT-rich Low_complexity Low_complexity 4 100 0 743 220 24 107 chrX 100446604 100447026 -76527114 - L1MC5 LINE L1 -722 7239 6853 629 206 13 13 chrX 100447032 100447187 -76526953 - L1MA10 LINE L1 0 6334 6180 375 241 62 103 chrX 100447187 100447411 -76526729 - L1ME1 LINE L1 -167 5999 5824 1884 131 17 58 chrX 100447465 100447809 -76526331 - MER1B DNA MER1_type -9 330 1 5140 223 115 13 chrX 100447809 100449474 -76524666 - L1ME1 LINE L1 -902 5244 3411 599 140 6 110 chrX 100450173 100450337 -76523803 - MER53 DNA DNA -35 154 8 233 192 0 0 chrX 100451131 100451183 -76522957 + L1MB8 LINE L1 6127 6178 0 283 297 18 25 chrX 100451488 100451660 -76522480 + L2 LINE L2 3139 3313 0 759 156 5 91 chrX 100451895 100452094 -76522046 - MER53 DNA DNA 0 189 8 366 134 0 0 chrX 100452630 100452697 -76521443 + (TG)n Simple_repeat Simple_repeat 2 68 0 575 305 76 9 chrX 100452822 100453032 -76521108 + MIR SINE MIR 20 243 -19 187 120 20 20 chrX 100453480 100453530 -76520610 + A-rich Low_complexity Low_complexity 2 51 0 304 273 82 27 chrX 100453549 100453659 -76520481 + MIR3 SINE MIR 47 162 -46 337 237 148 22 chrX 100453709 100453844 -76520296 - MIR SINE MIR 0 262 111 3847 269 65 23 chrX 100454218 100455485 -76518655 + L2 LINE L2 870 2196 -1118 1688 129 75 25 chrX 100455485 100455765 -76518375 - AluJo SINE Alu -18 294 1 3847 269 65 23 chrX 100455765 100455811 -76518329 + L2 LINE L2 2196 2239 -1075 6517 27 0 0 chrX 100456034 100456838 -76517302 - L1P LINE L1 -1561 4585 3782 4053 30 0 0 chrX 100456838 100457342 -76516798 + L1P LINE L1 4566 5069 -1077 236 284 62 0 chrX 100457352 100457433 -76516707 + MLT1I LTR MaLR 320 405 -4 2305 264 61 18 chrX 100457433 100458141 -76515999 + L2 LINE L2 2256 3027 -286 858 193 50 6 chrX 100458141 100458322 -76515818 - MER5A DNA MER1_type 0 189 1 2305 264 61 18 chrX 100458322 100458619 -76515521 + L2 LINE L2 3027 3310 -3 183 358 36 36 chrX 100459118 100459255 -76514885 - L2 LINE L2 -221 3051 2915 1831 115 4 0 chrX 100459351 100459603 -76514537 + AluSx SINE Alu 38 290 -22 341 270 113 0 chrX 100459617 100459776 -76514364 - MER20B DNA MER1_type -369 414 238 845 294 55 13 chrX 100459951 100460189 -76513951 - MIR SINE MIR 0 262 15 231 291 127 0 chrX 100460512 100460591 -76513549 + MIR3 SINE MIR 71 159 -49 1481 240 88 66 chrX 100460615 100461216 -76512924 + MER20B DNA MER1_type 30 651 -132 1125 8 0 0 chrX 100461216 100461344 -76512796 + L1PA4 LINE L1 6020 6147 -8 1481 240 88 66 chrX 100461344 100461480 -76512660 + MER20B DNA MER1_type 651 783 0 224 299 15 15 chrX 100462892 100462959 -76511181 + MIR SINE MIR 1 67 -195 911 271 209 25 chrX 100462960 100463391 -76510749 - L2 LINE L2 0 3313 2804 210 260 23 0 chrX 100464492 100464553 -76509587 - MIR SINE MIR -101 107 42 832 188 0 0 chrX 100464861 100464999 -76509141 + MER46A DNA MER2_type 1 138 -98 441 0 0 0 chrX 100465003 100465052 -76509088 + (TG)n Simple_repeat Simple_repeat 2 50 0 352 363 45 20 chrX 100465358 100465559 -76508581 - MIR3 SINE MIR 0 208 3 425 245 38 92 chrX 100465882 100466196 -76507944 - L1ME LINE L1 -340 5781 5485 227 303 40 86 chrX 100466341 100466539 -76507601 + L3b LINE CR1 1298 1486 -97 210 148 259 0 chrX 100467502 100467556 -76506584 - MIR SINE MIR -71 137 70 1389 320 114 27 chrX 100468605 100469499 -76504641 + L2 LINE L2 1894 2865 -449 225 379 10 61 chrX 100469544 100469742 -76504398 + L2 LINE L2 2880 3067 -205 411 309 51 22 chrX 100470692 100470870 -76503270 + MIR3 SINE MIR 12 194 -14 2051 187 71 12 chrX 100472112 100472593 -76501547 + Charlie7 DNA MER1_type 211 719 -1893 551 156 18 147 chrX 100472588 100472813 -76501327 + Charlie7 DNA MER1_type 2417 2612 0 * 247 259 97 50 chrX 100473121 100473258 -76500882 - MIR SINE MIR -61 147 10 270 0 0 0 chrX 100474099 100474129 -76500011 + (CA)n Simple_repeat Simple_repeat 2 31 0 297 0 0 0 chrX 100474454 100474487 -76499653 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chrX 100474561 100474582 -76499558 + AT_rich Low_complexity Low_complexity 1 21 0 370 190 90 40 chrX 100476712 100476812 -76497328 - MIR3 SINE MIR -6 202 98 212 0 36 0 chrX 100476863 100476891 -76497249 + (TG)n Simple_repeat Simple_repeat 2 30 0 237 159 0 0 chrX 100476958 100477002 -76497138 + G-rich Low_complexity Low_complexity 5 48 0 800 259 15 76 chrX 100477178 100477280 -76496860 + MIR SINE MIR 3 110 -152 1400 106 58 0 chrX 100477280 100477487 -76496653 + MER20 DNA MER1_type 1 219 0 800 259 15 76 chrX 100477487 100477647 -76496493 + MIR SINE MIR 110 249 -13 1362 257 52 0 chrX 100477667 100478029 -76496111 + L2 LINE L2 1707 2087 -1227 198 242 210 0 chrX 100478089 100478151 -76495989 + MIR SINE MIR 172 246 -16 693 130 8 2 chrX 100479917 100480052 -76494088 - L1MB7 LINE L1 -3 6175 6042 444 302 33 21 chrX 100480056 100480234 -76493906 - MIR SINE MIR -48 160 17 186 43 0 0 chrX 100480416 100480439 -76493701 + (CA)n Simple_repeat Simple_repeat 1 23 0 737 278 57 24 chrX 100480582 100480830 -76493310 + MIR SINE MIR 7 262 0 580 303 153 22 chrX 100481473 100481701 -76492439 - MIR SINE MIR 0 262 5 243 61 0 0 chrX 100481834 100481867 -76492273 + (T)n Simple_repeat Simple_repeat 1 33 0 860 181 0 13 chrX 100481874 100482029 -76492111 - FRAM SINE Alu -2 174 22 1015 266 47 25 chrX 100483150 100483597 -76490543 + L1ME4a LINE L1 5576 6032 -89 609 223 0 0 chrX 100483774 100483886 -76490254 + MER81 DNA DNA 1 112 -2 334 251 67 78 chrX 100483887 100484066 -76490074 - MIR3 SINE MIR -7 201 25 207 371 0 23 chrX 100484223 100484355 -76489785 + MIR SINE MIR 128 256 -6 449 254 0 27 chrX 100484417 100484527 -76489613 - MIR SINE MIR -93 169 63 509 237 119 41 chrX 100484817 100485011 -76489129 + MER63A DNA MER1_type 2 210 0 240 35 0 0 chrX 100485289 100485318 -76488822 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 2049 220 89 24 chrX 100485348 100485565 -76488575 - L1MC4 LINE L1 0 8042 7841 396 0 0 0 chrX 100485565 100485609 -76488531 + (CA)n Simple_repeat Simple_repeat 2 45 0 2049 220 89 24 chrX 100485609 100486068 -76488072 - L1MC4 LINE L1 -201 7841 7322 320 316 43 26 chrX 100486297 100486414 -76487726 + L2 LINE L2 3150 3268 -4 470 183 0 0 chrX 100486687 100486780 -76487360 - MLT1J LTR MaLR -7 504 412 3697 223 52 5 chrX 100486783 100487755 -76486385 + L1MEc LINE L1 44 1061 -5335 1481 225 32 29 chrX 100487755 100487981 -76486159 - MLT1J LTR MaLR -88 423 194 1846 181 3 0 chrX 100487981 100488274 -76485866 + AluJo SINE Alu 1 294 -18 1481 225 32 29 chrX 100488274 100488456 -76485684 - MLT1J LTR MaLR -317 194 14 222 37 0 0 chrX 100490300 100490327 -76483813 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1968 60 4 0 chrX 100490380 100490629 -76483511 - L1PA7 LINE L1 -1 6153 5904 259 193 18 18 chrX 100491523 100491580 -76482560 - MIR3 SINE MIR -3 205 149 22 0 0 0 chrX 100491670 100491692 -76482448 + AT_rich Low_complexity Low_complexity 1 22 0 42231 36 2 1 chrX 100491692 100497834 -76476306 - L1PA3 LINE L1 -3 6152 6 342 291 127 0 chrX 100497924 100498034 -76476106 - MIR3 SINE MIR -48 160 37 436 205 131 8 chrX 100498249 100498371 -76475769 + MIR SINE MIR 118 254 -8 394 306 9 9 chrX 100499190 100499301 -76474839 - MIR SINE MIR -150 112 2 256 227 30 15 chrX 100499613 100499679 -76474461 + CT-rich Low_complexity Low_complexity 1 67 0 29 0 0 0 chrX 100499795 100499824 -76474316 + AT_rich Low_complexity Low_complexity 1 29 0 1167 223 187 57 chrX 100499830 100500217 -76473923 + MLT1E LTR MaLR 1 475 -118 2581 218 26 6 chrX 100500217 100500764 -76473376 + MER74A LTR ERVL 1 558 0 1167 223 187 57 chrX 100500764 100500901 -76473239 + MLT1E LTR MaLR 475 593 0 4604 25 0 0 chrX 100501150 100501704 -76472436 - L1PA5 LINE L1 -294 5860 5307 1728 43 0 0 chrX 100501704 100501913 -76472227 + L1PA5 LINE L1 5942 6152 -2 21 57 0 0 chrX 100501913 100501948 -76472192 + AT_rich Low_complexity Low_complexity 1 35 0 529 246 15 31 chrX 100501948 100502078 -76472062 - MER5B DNA MER1_type -50 128 1 771 226 248 42 chrX 100504201 100504656 -76469484 - MLT1H LTR MaLR 0 549 1 457 265 94 0 chrX 100504663 100504809 -76469331 - MIR3 SINE MIR -65 143 5 21 36 0 0 chrX 100505061 100505089 -76469051 + AT_rich Low_complexity Low_complexity 1 28 0 657 246 179 9 chrX 100506305 100506529 -76467611 + MIR SINE MIR 1 262 0 181 85 0 85 chrX 100507195 100507242 -76466898 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2023 193 23 66 chrX 100507411 100507939 -76466201 + MLT1D LTR MaLR 1 505 0 199 304 0 0 chrX 100508083 100508129 -76466011 - L2 LINE L2 -17 3296 3251 433 333 60 24 chrX 100508947 100509224 -76464916 + L2 LINE L2 2720 3006 -307 225 167 21 42 chrX 100509580 100509628 -76464512 + MER5A DNA MER1_type 120 166 -23 * 263 221 15 44 chrX 100509585 100509653 -76464487 - MER5A DNA MER1_type -114 75 10 911 203 37 49 chrX 100509707 100509953 -76464187 - MIR SINE MIR 0 262 20 383 282 121 11 chrX 100510834 100511008 -76463132 + MER117 DNA MER1_type 5 197 0 500 242 176 13 chrX 100511016 100511169 -76462971 + MER5B DNA MER1_type 1 178 0 337 291 40 27 chrX 100511248 100511396 -76462744 + MER5B DNA MER1_type 17 166 -12 386 321 8 15 chrX 100511254 100511385 -76462755 - MER5A DNA MER1_type -24 165 36 435 268 261 7 chrX 100511463 100511601 -76462539 + MER5B DNA MER1_type 6 178 0 550 273 140 7 chrX 100513293 100513436 -76460704 + MIR3 SINE MIR 20 181 -27 930 195 47 0 chrX 100513525 100513715 -76460425 + MER3 DNA MER1_type 9 207 -2 2074 107 81 29 chrX 100514140 100514486 -76459654 - THE1B LTR MaLR 0 364 1 37 76 0 0 chrX 100514681 100514760 -76459380 + AT_rich Low_complexity Low_complexity 1 79 0 336 239 42 0 chrX 100514991 100515062 -76459078 - MER117 DNA MER1_type -78 119 46 652 260 12 24 chrX 100515162 100515331 -76458809 - MIR3 SINE MIR -5 203 37 1375 297 18 9 chrX 100517069 100517503 -76456637 - LTR16B LTR ERVL -2 462 25 207 139 0 0 chrX 100518003 100518039 -76456101 + (TATAG)n Simple_repeat Simple_repeat 2 37 0 942 176 6 12 chrX 100518065 100518223 -76455917 - MER5A DNA MER1_type -25 164 6 995 214 30 38 chrX 100518223 100518485 -76455655 + MIR SINE MIR 3 262 0 455 194 143 0 chrX 100518783 100518881 -76455259 - MIR SINE MIR -62 146 35 219 69 0 0 chrX 100519630 100519659 -76454481 + (T)n Simple_repeat Simple_repeat 1 29 0 287 378 36 0 chrX 100521257 100521368 -76452772 - L2 LINE L2 -54 3218 3104 4824 139 32 6 chrX 100521529 100522343 -76451797 - L1 LINE L1 -1840 4306 3472 4632 126 3 3 chrX 100522330 100523004 -76451136 + L1MA6 LINE L1 5627 6300 0 * 445 211 163 16 chrX 100523156 100523279 -76450861 + L2 LINE L2 3171 3311 -2 291 283 107 28 chrX 100523268 100523445 -76450695 - L2 LINE L2 -135 3178 2988 * 182 290 87 43 chrX 100525552 100525610 -76448530 - L2 LINE L2 -5 3267 3204 4009 121 4 6 chrX 100525610 100526138 -76448002 - MER1A DNA MER1_type 0 527 1 371 356 6 12 chrX 100526293 100526453 -76447687 - L2 LINE L2 -217 3055 2897 433 144 168 8 chrX 100526537 100526662 -76447478 - Charlie7 DNA MER1_type 0 2612 2468 358 260 40 10 chrX 100526679 100526779 -76447361 - Charlie7 DNA MER1_type -2509 103 1 291 338 87 56 chrX 100526965 100527320 -76446820 - L2 LINE L2 -542 2772 2407 755 260 87 26 chrX 100527472 100527703 -76446437 - MIR SINE MIR -16 246 2 1134 201 0 0 chrX 100528280 100528474 -76445666 + MER58A DNA MER1_type 31 224 0 355 225 0 25 chrX 100528476 100528556 -76445584 + LTR67 LTR ERVL 480 557 0 583 259 63 0 chrX 100528557 100528715 -76445425 - MIR SINE MIR -61 201 34 240 281 62 0 chrX 100529124 100529188 -76444952 + L2 LINE L2 3176 3243 -70 739 160 112 65 chrX 100531136 100531213 -76442927 + MER5B DNA MER1_type 1 73 -105 1791 184 40 43 chrX 100531213 100531588 -76442552 - MLT1A2 LTR MaLR 0 374 1 739 160 112 65 chrX 100531588 100531679 -76442461 + MER5B DNA MER1_type 73 177 -1 409 200 133 0 chrX 100531697 100531787 -76442353 + MER5A DNA MER1_type 10 111 -78 858 150 7 13 chrX 100532471 100532624 -76441516 + L1MB3 LINE L1 6030 6181 -2 1303 136 14 84 chrX 100532642 100532717 -76441423 + L1MD3 LINE L1 7729 7808 -187 696 231 23 0 chrX 100532717 100532847 -76441293 + FLAM_A SINE Alu 1 133 0 1303 136 14 84 chrX 100532847 100533058 -76441082 + L1MD3 LINE L1 7808 7995 0 272 63 95 11 chrX 100533271 100533366 -76440774 + (TA)n Simple_repeat Simple_repeat 1 103 0 867 291 36 0 chrX 100533395 100533646 -76440494 + MIR SINE MIR 2 261 -1 377 190 90 49 chrX 100533712 100533903 -76440237 - L1ME3A LINE L1 -1 6169 5961 251 324 108 7 chrX 100534148 100534296 -76439844 - L2 LINE L2 -1 3271 3109 434 269 61 61 chrX 100534468 100534562 -76439578 + L1ME3 LINE L1 4491 4584 -1562 2161 127 0 0 chrX 100534562 100534884 -76439256 - AluSx SINE Alu 0 312 1 434 269 61 61 chrX 100534884 100535131 -76439009 + L1ME3 LINE L1 4583 4832 -1314 822 315 45 36 chrX 100535443 100536376 -76437764 + L1ME3 LINE L1 4936 5884 -278 210 67 0 0 chrX 100536428 100536440 -76437700 + (CA)n Simple_repeat Simple_repeat 2 13 -18 2236 99 0 10 chrX 100536440 100536732 -76437408 + AluSg1 SINE Alu 3 291 -18 210 67 0 0 chrX 100536732 100536749 -76437391 + (CA)n Simple_repeat Simple_repeat 12 31 0 622 81 49 0 chrX 100536757 100536880 -76437260 + (TAGA)n Simple_repeat Simple_repeat 2 130 0 496 29 29 0 chrX 100536917 100536987 -76437153 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 207 189 0 0 chrX 100536987 100537024 -76437116 + GA-rich Low_complexity Low_complexity 1 37 0 368 387 44 21 chrX 100537237 100537729 -76436411 - L2 LINE L2 -191 3081 2579 385 295 133 40 chrX 100537873 100538249 -76435891 - L2 LINE L2 -1206 2108 1698 238 309 80 40 chrX 100539811 100540012 -76434128 + L2 LINE L2 1237 1445 -1869 265 367 70 19 chrX 100540141 100540299 -76433841 + L2 LINE L2 3088 3253 -19 321 282 183 15 chrX 100540577 100540726 -76433414 + MIR SINE MIR 45 216 -46 225 0 0 0 chrX 100541925 100541950 -76432190 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 520 273 35 17 chrX 100542029 100542201 -76431939 - MIR SINE MIR -56 206 32 593 250 120 16 chrX 100543171 100543363 -76430777 + MIR SINE MIR 1 212 -50 414 0 0 0 chrX 100543717 100543763 -76430377 + (TATG)n Simple_repeat Simple_repeat 3 48 0 180 311 122 0 chrX 100544020 100544094 -76430046 + MIR SINE MIR 16 98 -110 226 350 50 0 chrX 100544556 100544636 -76429504 - L2 LINE L2 0 3313 3230 746 292 66 33 chrX 100544680 100545046 -76429094 + L2 LINE L2 2296 2673 -641 185 323 0 0 chrX 100545185 100545247 -76428893 - MIR SINE MIR 0 262 201 844 228 29 6 chrX 100545248 100545419 -76428721 + MER5A DNA MER1_type 1 175 -14 407 312 118 18 chrX 100545447 100545617 -76428523 - MIR SINE MIR -70 192 6 2368 98 9 6 chrX 100545981 100546299 -76427841 + THE1C LTR MaLR 1 319 -56 365 238 158 0 chrX 100546530 100546631 -76427509 + L2 LINE L2 3197 3313 0 206 300 164 18 chrX 100546768 100546878 -76427262 + MIR3 SINE MIR 81 206 -2 3128 138 30 38 chrX 100546914 100547522 -76426618 + MER4B LTR ERV1 3 779 0 567 317 237 7 chrX 100547588 100547875 -76426265 - L2 LINE L2 0 3272 2920 1079 283 58 38 chrX 100547892 100548338 -76425802 - L2 LINE L2 -658 2656 2202 381 250 129 8 chrX 100548620 100548752 -76425388 - MIR SINE MIR -48 214 67 415 238 58 107 chrX 100549669 100549875 -76424265 + MIR3 SINE MIR 10 205 -3 3233 76 2 7 chrX 100551445 100551852 -76422288 - L1PA7 LINE L1 0 6154 5750 208 179 26 0 chrX 100551934 100551973 -76422167 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 1983 114 51 0 chrX 100553732 100554005 -76420135 - AluSg SINE Alu -19 291 5 2701 205 20 0 chrX 100554366 100554858 -76419282 - LTR53 LTR ERVL -3 516 15 404 185 32 0 chrX 100558381 100558476 -76415664 - MIR SINE MIR -64 198 101 995 308 90 13 chrX 100558893 100559358 -76414782 - LTR33 LTR ERVL -8 513 13 655 179 295 35 chrX 100561125 100561298 -76412842 + MER20 DNA MER1_type 1 218 -1 386 277 62 0 chrX 100562581 100562711 -76411429 + MER58C DNA MER1_type 78 215 0 372 270 140 6 chrX 100564006 100564163 -76409977 - MIR3 SINE MIR -6 202 23 220 288 15 0 chrX 100565366 100565432 -76408708 + CT-rich Low_complexity Low_complexity 3 69 0 2830 206 13 14 chrX 100566185 100566815 -76407325 - L1M4 LINE L1 -3201 2945 2317 232 145 53 79 chrX 100566830 100566906 -76407234 - L1MC5 LINE L1 -30 7931 7858 2021 164 30 12 chrX 100566925 100567260 -76406880 + MER2 DNA MER2_type 4 344 0 245 159 16 63 chrX 100567270 100567323 -76406817 + (TCCA)n Simple_repeat Simple_repeat 2 53 -8 2152 64 4 11 chrX 100567323 100567590 -76406550 - L1PA10 LINE L1 -2 6166 5902 245 159 16 63 chrX 100567590 100567599 -76406541 + (TCCA)n Simple_repeat Simple_repeat 53 61 0 1961 220 50 24 chrX 100567715 100568211 -76405929 - L1ME2 LINE L1 -16 6148 5640 412 295 30 45 chrX 100568557 100568757 -76405383 - MER117 DNA MER1_type 0 197 1 246 176 0 0 chrX 100569766 100569817 -76404323 + CT-rich Low_complexity Low_complexity 2 52 0 212 77 26 0 chrX 100569814 100569853 -76404287 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 750 254 79 21 chrX 100572093 100572333 -76401807 + MIR SINE MIR 4 257 -5 1242 256 116 42 chrX 100572387 100573121 -76401019 - L2 LINE L2 -7 3306 2534 508 219 81 38 chrX 100573139 100573482 -76400658 - L1MC5 LINE L1 -44 7917 7514 206 247 62 25 chrX 100573487 100573568 -76400572 - L2 LINE L2 -775 2539 2456 186 232 159 0 chrX 100573819 100573888 -76400252 + MIR SINE MIR 36 115 -93 2544 121 5 13 chrX 100573923 100574320 -76399820 - L1MA4A LINE L1 -6 6297 5904 1538 169 49 0 chrX 100574379 100574686 -76399454 + MER33 DNA MER1_type 1 322 -2 449 309 5 48 chrX 100574778 100574961 -76399179 - MIR3 SINE MIR -62 146 3 321 322 36 4 chrX 100575317 100575466 -76398674 + MIR SINE MIR 28 180 -63 195 183 28 84 chrX 100576583 100576654 -76397486 - L2 LINE L2 -1 3271 3205 360 0 0 0 chrX 100577015 100577055 -76397085 + (CA)n Simple_repeat Simple_repeat 2 41 0 2435 88 0 0 chrX 100579256 100579553 -76394587 + AluSx SINE Alu 1 297 -15 543 214 10 0 chrX 100580572 100580675 -76393465 - MER97b DNA MER1_type? -949 104 1 391 354 82 0 chrX 100583012 100583170 -76390970 + MIR3 SINE MIR 19 189 -19 331 298 0 0 chrX 100584058 100584142 -76389998 + L2 LINE L2 3185 3268 -4 381 310 86 11 chrX 100585368 100585542 -76388598 - MER5A DNA MER1_type -1 188 2 215 253 266 0 chrX 100585902 100585981 -76388159 + MER5B DNA MER1_type 1 100 -78 394 155 107 0 chrX 100687729 100687813 -76286327 + L1MA5 LINE L1 6208 6300 0 229 192 0 19 chrX 100687841 100687893 -76286247 - MER5B DNA MER1_type -127 51 1 544 270 172 9 chrX 100688504 100688719 -76285421 - MIR SINE MIR -8 254 5 883 144 0 0 chrX 100688843 100688968 -76285172 - FLAM_C SINE Alu -8 125 1 309 253 100 67 chrX 100689727 100689877 -76284263 + MIR3 SINE MIR 6 160 -48 2134 125 17 0 chrX 100690067 100690362 -76283778 + AluSx SINE Alu 1 300 -12 1424 97 14 5 chrX 100690657 100690864 -76283276 - L1MA4A LINE L1 0 6303 6095 789 227 83 20 chrX 100691061 100691361 -76282779 - L1M4 LINE L1 -3105 3041 2723 412 304 37 11 chrX 100691363 100691554 -76282586 - L1M4 LINE L1 -3497 2649 2454 2146 138 3 3 chrX 100692670 100693021 -76281119 - AluJb SINE Alu 0 351 1 315 0 0 0 chrX 100693193 100693228 -76280912 + (CA)n Simple_repeat Simple_repeat 2 36 0 2036 120 0 0 chrX 100693339 100693614 -76280526 + AluSx SINE Alu 1 275 -37 282 56 0 0 chrX 100693615 100693651 -76280489 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 672 277 33 33 chrX 100693860 100694073 -76280067 - MIR SINE MIR -31 231 19 2348 103 0 0 chrX 100694625 100694925 -76279215 + AluSx SINE Alu 1 300 -12 649 333 32 8 chrX 100695228 100695474 -76278666 - MIR SINE MIR -8 254 3 513 32 0 0 chrX 100695504 100695567 -76278573 + (TC)n Simple_repeat Simple_repeat 2 64 0 501 80 0 0 chrX 100695566 100695641 -76278499 + (TG)n Simple_repeat Simple_repeat 2 76 0 * 464 197 87 16 chrX 100695910 100696037 -76278103 + MIR SINE MIR 122 257 -5 513 68 0 0 chrX 100696070 100696144 -76277996 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 223 197 0 28 chrX 100696144 100696215 -76277925 + GA-rich Low_complexity Low_complexity 4 72 0 1394 130 117 0 chrX 100696404 100696634 -76277506 - Tigger2 DNA MER2_type 0 2718 2462 4332 139 33 8 chrX 100696700 100697424 -76276716 - Tigger2 DNA MER2_type -1974 744 3 1125 139 0 0 chrX 100697426 100697591 -76276549 + Tigger2 DNA MER2_type 548 712 -2006 * 1478 243 34 56 chrX 100697575 100698077 -76276063 + MER74B LTR ERVL 57 547 -75 255 304 14 54 chrX 100698293 100698441 -76275699 - L2 LINE L2 -4 3309 3168 528 286 78 20 chrX 100698449 100698694 -76275446 + MIR SINE MIR 3 261 -1 591 180 193 13 chrX 100698865 100698942 -76275198 + L1M4 LINE L1 2900 2962 -3184 1703 121 13 89 chrX 100698942 100699255 -76274885 - AluSx SINE Alu -23 289 1 591 180 193 13 chrX 100699255 100699416 -76274724 + L1M4 LINE L1 2962 3181 -2965 1049 72 0 0 chrX 100699416 100699541 -76274599 + AluSq/x SINE Alu 1 125 -188 23 0 0 0 chrX 100699541 100699564 -76274576 + AT_rich Low_complexity Low_complexity 1 23 0 301 265 77 0 chrX 100699610 100699778 -76274362 + L1P LINE L1 5245 5423 -728 * 444 333 58 43 chrX 100699776 100700239 -76273901 + L1MC4a LINE L1 5450 5919 -1889 207 211 0 0 chrX 100700279 100700317 -76273823 + (TATG)n Simple_repeat Simple_repeat 3 40 0 1536 72 0 0 chrX 100701720 100701901 -76272239 + AluSc SINE Alu 118 298 -11 788 163 21 64 chrX 100702170 100702311 -76271829 + AluJb SINE Alu 2 136 -176 720 288 76 42 chrX 100702498 100702710 -76271430 - L1M4 LINE L1 -1947 4199 3996 746 172 8 8 chrX 100702710 100702869 -76271271 - FLAM_C SINE Alu 0 133 1 720 288 76 42 chrX 100702869 100703164 -76270976 - L1M4 LINE L1 -2150 3996 3667 1764 147 0 73 chrX 100703164 100703477 -76270663 + AluJo SINE Alu 1 290 -22 720 288 76 42 chrX 100703477 100703559 -76270581 - L1M4 LINE L1 -2479 3667 3589 1830 123 0 0 chrX 100703585 100703838 -76270302 + AluSq SINE Alu 1 253 -60 21467 86 9 3 chrX 100703938 100706804 -76267336 - L1P LINE L1 -3255 2891 11 1645 127 123 8 chrX 100707003 100707263 -76266877 - AluSg1 SINE Alu -19 290 1 432 253 71 15 chrX 100707312 100707517 -76266623 + L1ME3A LINE L1 5720 5881 -286 338 304 8 8 chrX 100707910 100708035 -76266105 - L1ME1 LINE L1 -18 6148 6024 684 158 10 0 chrX 100708180 100708281 -76265859 - AluJ/FLAM SINE Alu -210 102 1 4931 166 8 5 chrX 100708289 100708818 -76265322 - L1PA16 LINE L1 -200 5966 5440 2050 144 0 0 chrX 100708818 100709123 -76265017 - AluSx SINE Alu -7 305 1 4931 166 8 5 chrX 100709123 100710252 -76263888 - L1PA16 LINE L1 -726 5440 4302 2386 291 36 43 chrX 100710371 100711020 -76263120 + L1M4 LINE L1 3064 3716 -2430 2466 90 0 6 chrX 100711020 100711332 -76262808 - AluSx SINE Alu -2 310 1 2386 291 36 43 chrX 100711332 100712002 -76262138 + L1M4 LINE L1 3716 4374 -1772 708 240 235 0 chrX 100712036 100712236 -76261904 + MIR SINE MIR 15 261 -1 710 313 27 0 chrX 100712710 100712934 -76261206 - MIR SINE MIR -5 257 28 252 0 0 0 chrX 100713788 100713816 -76260324 + (CA)n Simple_repeat Simple_repeat 2 29 0 1566 193 40 3 chrX 100714234 100714535 -76259605 + AluJo SINE Alu 1 312 0 411 253 11 0 chrX 100714751 100714838 -76259302 - MIR3 SINE MIR -25 183 96 584 204 1 22 chrX 100715032 100715208 -76258932 + MIR SINE MIR 37 255 -7 308 230 230 37 chrX 100715932 100716067 -76258073 - MIR SINE MIR -94 168 8 556 202 0 0 chrX 100717239 100717338 -76256802 + MER5A DNA MER1_type 11 109 -80 526 281 0 8 chrX 100717422 100717550 -76256590 + L2 LINE L2 3178 3304 -9 283 172 31 47 chrX 100717552 100717616 -76256524 + MIR SINE MIR 85 147 -115 301 229 57 14 chrX 100717845 100717915 -76256225 - L2 LINE L2 0 3313 3241 2205 134 0 0 chrX 100717915 100718235 -76255905 + HUERS-P3 LTR ERV1 8599 8918 -1 3555 120 44 7 chrX 100718235 100718775 -76255365 + LTR9B LTR ERV1 1 560 -84 2440 254 53 23 chrX 100718791 100719470 -76254670 - L2 LINE L2 -55 3258 2601 832 156 8 0 chrX 100719470 100719598 -76254542 - FLAM_A SINE Alu -4 129 1 2440 254 53 23 chrX 100719598 100719799 -76254341 - L2 LINE L2 -712 2601 2346 1826 169 31 81 chrX 100719799 100720183 -76253957 - MLT1A1 LTR MaLR 0 365 1 2440 254 53 23 chrX 100720183 100720271 -76253869 - L2 LINE L2 -967 2346 2262 2845 3 0 3 chrX 100720415 100720721 -76253419 + AluYa5 SINE Alu 1 305 -6 1020 165 30 15 chrX 100721730 100721930 -76252210 - MER3 DNA MER1_type 0 209 7 422 299 16 43 chrX 100722678 100722865 -76251275 + L1ME LINE L1 5482 5663 -458 3982 119 63 13 chrX 100723410 100724015 -76250125 + MER41B LTR ERV1 1 635 0 5396 98 19 17 chrX 100724374 100725157 -76248983 - MER4D LTR ERV1 0 903 119 598 130 89 95 chrX 100725214 100725255 -76248885 - L1MB4 LINE L1 0 6180 6140 2105 132 10 0 chrX 100725255 100725550 -76248590 - AluSx SINE Alu -9 303 6 598 130 89 95 chrX 100725550 100725677 -76248463 - L1MB4 LINE L1 -40 6140 6013 189 0 0 0 chrX 100725677 100725698 -76248442 + (A)n Simple_repeat Simple_repeat 1 21 0 2065 127 0 0 chrX 100725710 100725993 -76248147 - AluSx SINE Alu -29 283 1 422 126 0 176 chrX 100725994 100726113 -76248027 - MER4D LTR ERV1 -774 98 1 503 302 33 37 chrX 100726141 100726356 -76247784 + MIR SINE MIR 49 262 0 229 299 75 19 chrX 100726618 100726725 -76247415 + L2 LINE L2 3139 3251 -21 430 252 34 8 chrX 100726960 100727079 -76247061 + MIR3 SINE MIR 84 205 -3 554 162 49 18 chrX 100727257 100727388 -76246752 - MIR SINE MIR -81 127 20 889 226 44 9 chrX 100727925 100728151 -76245989 + L1ME3 LINE L1 5929 6162 0 3646 119 0 31 chrX 100728288 100728832 -76245308 + MER1A DNA MER1_type 1 527 0 307 250 11 23 chrX 100728834 100728922 -76245218 + MER5B DNA MER1_type 27 113 -65 2409 78 14 3 chrX 100728932 100729228 -76244912 - AluSx SINE Alu -13 299 1 449 270 117 36 chrX 100729329 100729525 -76244615 - MIR SINE MIR -49 213 2 1461 142 111 28 chrX 100729588 100729876 -76244264 - AluJb SINE Alu 0 312 1 829 183 28 33 chrX 100729889 100730187 -76243953 - L1ME3 LINE L1 -1 6161 5830 192 272 88 18 chrX 100730823 100730937 -76243203 + L2 LINE L2 19 140 -3174 4284 223 58 115 chrX 100730937 100732986 -76241154 + L2 LINE L2 325 2257 -1057 734 286 75 0 chrX 100732981 100733194 -76240946 + MIR SINE MIR 33 261 -1 * 186 290 74 85 chrX 100733560 100733736 -76240404 - L2 LINE L2 -15 3257 3084 1048 228 137 52 chrX 100735334 100735838 -76238302 + L1MC4 LINE L1 7496 8042 0 22 35 0 0 chrX 100735844 100735873 -76238267 + AT_rich Low_complexity Low_complexity 1 29 0 750 221 10 53 chrX 100735933 100736141 -76237999 + L1ME4a LINE L1 5553 5751 -370 275 228 38 13 chrX 100736514 100736593 -76237547 + L1ME4a LINE L1 5965 6045 -76 2035 130 3 35 chrX 100736934 100737250 -76236890 - AluSx SINE Alu -6 306 1 2244 149 2 40 chrX 100737889 100738071 -76236069 + MLT1B LTR MaLR 3 190 -200 2257 119 0 0 chrX 100738071 100738374 -76235766 + AluSx SINE Alu 5 307 -5 2244 149 2 40 chrX 100738374 100738594 -76235546 + MLT1B LTR MaLR 190 390 0 480 213 74 8 chrX 100738607 100738729 -76235411 - MIR SINE MIR -27 235 106 496 294 35 13 chrX 100738730 100738958 -76235182 + L1ME3A LINE L1 5713 5945 -225 227 271 0 0 chrX 100738978 100739048 -76235092 + (TA)n Simple_repeat Simple_repeat 2 71 0 387 271 54 23 chrX 100739342 100739471 -76234669 - MIR SINE MIR -119 143 11 210 188 0 72 chrX 100740599 100740668 -76233472 + CT-rich Low_complexity Low_complexity 1 64 0 191 161 0 0 chrX 100740821 100740852 -76233288 + MER5A DNA MER1_type 113 143 -46 530 212 263 0 chrX 100741092 100741271 -76232869 - MIR SINE MIR -34 228 3 251 204 301 0 chrX 100741482 100741575 -76232565 - L2 LINE L2 0 3313 3193 586 254 117 31 chrX 100741884 100743162 -76230978 + L1MEd LINE L1 1 1257 -4862 2394 74 0 0 chrX 100744013 100744327 -76229813 - AluSp SINE Alu 0 314 1 486 0 0 0 chrX 100744693 100744747 -76229393 + (CA)n Simple_repeat Simple_repeat 1 54 0 336 176 0 71 chrX 100746337 100746422 -76227718 - MIR SINE MIR 0 262 184 666 164 61 146 chrX 100746544 100746874 -76227266 + L1MC5 LINE L1 7622 7923 -38 687 140 0 0 chrX 100747293 100747436 -76226704 + (TTCC)n Simple_repeat Simple_repeat 1 143 0 1453 199 7 18 chrX 100747446 100747728 -76226412 - AluJo SINE Alu -33 279 1 777 165 8 0 chrX 100747728 100747861 -76226279 - AluJo SINE Alu -177 135 2 410 234 90 9 chrX 100747998 100748109 -76226031 + MIR SINE MIR 17 136 -72 3170 181 45 5 chrX 100748219 100748894 -76225246 + L1M4 LINE L1 4731 5420 -743 269 174 0 0 chrX 100748897 100748943 -76225197 + Tigger4(Zombi) DNA MER2_type 18 63 -2668 256 43 43 22 chrX 100748951 100748997 -76225143 + (TTTTA)n Simple_repeat Simple_repeat 1 47 0 378 329 27 0 chrX 100749350 100749499 -76224641 + MIR3 SINE MIR 56 208 0 189 0 0 0 chrX 100750109 100750130 -76224010 + (CA)n Simple_repeat Simple_repeat 2 22 0 472 240 23 51 chrX 100750184 100750359 -76223781 + MER5B DNA MER1_type 4 173 -5 243 61 0 0 chrX 100750791 100750824 -76223316 + (CA)n Simple_repeat Simple_repeat 2 34 0 302 307 153 27 chrX 100751337 100751637 -76222503 - L1MC4a LINE L1 -1860 5948 5611 307 183 0 33 chrX 100752019 100752079 -76222061 + MIR3 SINE MIR 112 169 -39 289 372 90 39 chrX 100752096 100752408 -76221732 - L2 LINE L2 -37 3235 2908 454 252 82 25 chrX 100752568 100752727 -76221413 + MER117 DNA MER1_type 30 197 0 188 299 52 116 chrX 100752737 100753141 -76220999 - L2 LINE L2 -557 2757 2380 194 309 0 43 chrX 100753449 100753543 -76220597 - MIR SINE MIR -44 218 129 * 655 185 12 227 chrX 100753542 100753750 -76220390 - MIR SINE MIR -1 261 148 198 71 0 0 chrX 100753750 100753778 -76220362 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 655 185 12 227 chrX 100753778 100753899 -76220241 - MIR SINE MIR -114 148 3 291 256 7 102 chrX 100753908 100754045 -76220095 - MIR3 SINE MIR -75 133 10 2495 81 3 0 chrX 100754461 100754770 -76219370 + AluSp SINE Alu 1 310 -3 803 175 0 6 chrX 100754770 100754930 -76219210 + GA-rich Low_complexity Low_complexity 1 159 0 654 218 73 50 chrX 100755090 100755269 -76218871 + MIR3 SINE MIR 19 201 -7 2017 159 0 0 chrX 100755373 100755669 -76218471 + AluJo SINE Alu 1 296 -16 226 311 48 0 chrX 100756684 100756787 -76217353 + L1P LINE L1 5276 5383 -768 370 296 39 65 chrX 100758054 100758284 -76215856 + MIR SINE MIR 15 238 -24 215 323 94 16 chrX 100758324 100758451 -76215689 + MIR SINE MIR 56 192 -70 1475 246 9 29 chrX 100758557 100758615 -76215525 + L1MD1 LINE L1 5776 5834 -1974 1590 182 0 55 chrX 100758615 100758922 -76215218 + AluJb SINE Alu 8 297 -15 1475 246 9 29 chrX 100758922 100759311 -76214829 + L1MD1 LINE L1 5834 7796 -12 7971 122 41 14 chrX 100759328 100759650 -76214490 + HSMAR2 DNA Mariner 6 318 -984 1499 65 0 0 chrX 100759650 100759835 -76214305 - L1PA3 LINE L1 0 6155 5971 7971 122 41 14 chrX 100759835 100760774 -76213366 + HSMAR2 DNA Mariner 318 1301 -1 2344 92 3 3 chrX 100760813 100761107 -76213033 - AluSq SINE Alu -19 294 1 6146 168 8 3 chrX 100761123 100762240 -76211900 + L1PA15-16 LINE L1 1783 2905 -3944 1343 152 0 14 chrX 100762388 100762599 -76211541 + AluJb SINE Alu 92 299 -13 3364 236 45 65 chrX 100762599 100763291 -76210849 + L1M4 LINE L1 3185 3889 -2257 2264 76 0 57 chrX 100763291 100763605 -76210535 + AluY SINE Alu 1 296 -15 3364 236 45 65 chrX 100763605 100764576 -76209564 + L1M4 LINE L1 3889 4759 -1387 350 214 207 50 chrX 100767025 100767165 -76206975 + MIR3 SINE MIR 40 201 -7 311 202 67 11 chrX 100767966 100768055 -76206085 - MER5B DNA MER1_type -84 94 1 235 301 127 52 chrX 100769276 100769638 -76204502 - L2 LINE L2 -20 3252 2864 185 94 31 0 chrX 100774722 100774754 -76199386 + GA-rich Low_complexity Low_complexity 3 35 0 257 183 17 0 chrX 100774904 100774964 -76199176 + G-rich Low_complexity Low_complexity 1 61 0 189 304 61 95 chrX 100776331 100776627 -76197513 - L2 LINE L2 -21 3251 2966 286 269 120 28 chrX 100777111 100777219 -76196921 - MIR3 SINE MIR -89 119 2 802 284 59 0 chrX 100778315 100778551 -76195589 + MIR SINE MIR 3 252 -10 308 306 143 54 chrX 100778856 100779114 -76195026 - L2 LINE L2 0 3272 2992 1177 239 18 11 chrX 100779425 100779697 -76194443 - Charlie8 DNA MER1_type -2143 274 1 498 311 54 30 chrX 100779720 100780148 -76193992 - L2 LINE L2 -574 2740 2303 530 303 52 28 chrX 100780179 100780430 -76193710 + MIR SINE MIR 5 261 -1 223 315 11 0 chrX 100780427 100780516 -76193624 - L2 LINE L2 -1029 2285 2196 * 211 359 17 8 chrX 100780675 100780792 -76193348 - MIR3 SINE MIR -6 202 85 285 336 45 0 chrX 100780897 100781007 -76193133 + L2 LINE L2 3121 3235 -37 199 320 67 0 chrX 100781484 100781559 -76192581 + L2 LINE L2 3143 3222 -50 310 250 201 56 chrX 100781563 100781813 -76192327 + L1MC/D LINE L1 5517 5801 -334 394 286 71 28 chrX 100781915 100782097 -76192043 + MIR SINE MIR 3 192 -70 509 325 31 49 chrX 100783168 100783454 -76190686 - L2 LINE L2 -420 2894 2614 191 341 151 20 chrX 100783530 100783888 -76190252 - L2 LINE L2 -923 2391 1987 331 263 37 68 chrX 100783891 100784081 -76190059 + MER3 DNA MER1_type 26 209 0 * 1129 185 0 0 chrX 100784081 100784119 -76190021 - MER3 DNA MER1_type -162 47 10 219 309 12 48 chrX 100784160 100784244 -76189896 - L2 LINE L2 -1387 1927 1847 5041 242 73 22 chrX 100784321 100785757 -76188383 + L2 LINE L2 279 1806 -1508 1516 180 59 3 chrX 100785757 100786062 -76188078 + MER33 DNA MER1_type 3 324 0 5041 242 73 22 chrX 100786062 100786223 -76187917 + L2 LINE L2 1806 1957 -1357 502 317 73 33 chrX 100786235 100786538 -76187602 - L2 LINE L2 -656 2658 2344 332 227 34 85 chrX 100787180 100787200 -76186940 - MER5A DNA MER1_type -22 167 148 803 157 5 130 chrX 100787200 100787416 -76186724 - MER5A DNA MER1_type 0 189 1 332 227 34 85 chrX 100787416 100787571 -76186569 - MER5A DNA MER1_type -41 148 1 286 57 0 0 chrX 100788298 100788333 -76185807 + Alu SINE Alu 4 38 -263 1395 157 5 0 chrX 100788333 100788571 -76185569 + AluSg/x SINE Alu 71 309 0 1924 204 78 4 chrX 100788695 100789146 -76184994 - Charlie4a DNA MER1_type -24 484 1 413 322 108 58 chrX 100789292 100789829 -76184311 + L2 LINE L2 219 782 -2532 894 216 9 35 chrX 100790255 100790487 -76183653 - MIR SINE MIR 0 262 37 917 185 22 81 chrX 100791064 100791116 -76183024 - MER3 DNA MER1_type 0 209 156 2053 142 0 0 chrX 100791116 100791398 -76182742 + AluSx SINE Alu 1 282 -30 300 53 0 0 chrX 100791398 100791436 -76182704 + (CAAT)n Simple_repeat Simple_repeat 3 40 0 917 185 22 81 chrX 100791436 100791604 -76182536 - MER3 DNA MER1_type -51 158 1 230 290 0 16 chrX 100791808 100791870 -76182270 + GA-rich Low_complexity Low_complexity 5 65 0 441 318 87 31 chrX 100791962 100792343 -76181797 + L2 LINE L2 1940 2341 -973 402 113 28 42 chrX 100792362 100792433 -76181707 + MLT1A1 LTR MaLR 1 70 -295 222 37 0 0 chrX 100792889 100792916 -76181224 + (CAT)n Simple_repeat Simple_repeat 1 27 0 661 244 62 58 chrX 100792920 100793162 -76180978 - MIR SINE MIR -13 249 7 496 250 235 0 chrX 100793207 100793411 -76180729 - MIR SINE MIR -8 254 3 494 282 52 6 chrX 100795245 100795419 -76178721 + MER5A DNA MER1_type 8 189 0 207 324 14 0 chrX 100795505 100795579 -76178561 + L2 LINE L2 2932 3006 -266 * 360 163 153 20 chrX 100795574 100795672 -76178468 - L2 LINE L2 -7 3306 3196 244 175 0 0 chrX 100795676 100795716 -76178424 + L2 LINE L2 3016 3055 -217 195 69 0 0 chrX 100795858 100795887 -76178253 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 329 257 0 14 chrX 100795923 100795993 -76178147 + L2 LINE L2 3242 3310 -3 382 313 50 0 chrX 100796426 100796605 -76177535 + MER5A DNA MER1_type 2 189 0 2339 84 3 0 chrX 100797049 100797345 -76176795 - AluY SINE Alu -14 297 1 184 30 61 0 chrX 100797580 100797613 -76176527 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 202 345 0 0 chrX 100798062 100798146 -76175994 + L3b LINE CR1 1121 1204 -379 193 381 36 0 chrX 100798274 100798358 -76175782 - MIR SINE MIR -118 144 58 196 274 0 0 chrX 100799448 100799499 -76174641 + MIR SINE MIR 49 99 -109 237 237 0 0 chrX 100801307 100801366 -76172774 + (TA)n Simple_repeat Simple_repeat 2 60 0 307 258 67 0 chrX 100801924 100802013 -76172127 + MIR3 SINE MIR 91 185 -23 732 116 7 123 chrX 100802019 100802174 -76171966 - FLAM_C SINE Alu -1 142 6 180 0 0 0 chrX 100802451 100802471 -76171669 + (TTG)n Simple_repeat Simple_repeat 2 21 0 372 281 76 38 chrX 100802693 100802931 -76171209 + MIR SINE MIR 6 252 -10 734 148 0 0 chrX 100803587 100803695 -76170445 - FLAM_A SINE Alu -25 117 10 358 75 38 0 chrX 100805061 100805114 -76169026 + Alu SINE Alu 244 298 -4 186 43 0 0 chrX 100805371 100805394 -76168746 + (TTTCC)n Simple_repeat Simple_repeat 5 27 0 9703 35 3 16 chrX 100806231 100807699 -76166441 + L1PA6 LINE L1 4210 5673 -481 2498 73 0 13 chrX 100807699 100808012 -76166128 + AluY SINE Alu 1 309 -2 9703 35 3 16 chrX 100808012 100808488 -76165652 + L1PA6 LINE L1 5673 6154 0 2359 102 14 11 chrX 100808884 100809255 -76164885 - L1MB3 LINE L1 -2 6181 5810 1467 213 36 9 chrX 100809432 100809761 -76164379 + MER46C DNA MER2_type 1 338 0 1911 130 12 62 chrX 100810384 100810707 -76163433 - AluJo SINE Alu -5 307 1 199 189 0 69 chrX 100811304 100811434 -76162706 - MIR SINE MIR -92 170 16 301 287 177 5 chrX 100812426 100812635 -76161505 + L2 LINE L2 2589 2833 -481 232 276 23 0 chrX 100812709 100812796 -76161344 - L1MC/D LINE L1 -1984 5824 5736 529 285 78 45 chrX 100812819 100813461 -76160679 - L1MC/D LINE L1 -458 5663 5000 183 361 90 0 chrX 100813472 100813616 -76160524 + L2 LINE L2 2929 3085 -187 629 253 58 39 chrX 100813965 100814222 -76159918 + MIR SINE MIR 1 262 0 366 270 88 14 chrX 100814384 100814532 -76159608 + MIR SINE MIR 101 259 -3 2186 166 21 16 chrX 100814565 100814988 -76159152 + L1MD3 LINE L1 7570 7994 -1 211 293 71 91 chrX 100815022 100815108 -76159032 + L2 LINE L2 2449 2535 -779 1913 168 3 16 chrX 100815108 100815423 -76158717 - AluJo SINE Alu -1 311 1 211 293 71 91 chrX 100815423 100815557 -76158583 + L2 LINE L2 2535 2664 -650 1418 116 70 0 chrX 100815557 100815772 -76158368 + MER30 DNA MER1_type 1 230 0 211 293 71 91 chrX 100815772 100815847 -76158293 + L2 LINE L2 2664 2739 -575 2932 193 60 20 chrX 100815857 100816473 -76157667 + L1M3c LINE L1 1153 1743 -4467 1954 119 0 76 chrX 100816473 100816801 -76157339 + AluSx SINE Alu 1 303 -9 189 0 0 0 chrX 100816801 100816822 -76157318 + (GGGGA)n Simple_repeat Simple_repeat 5 25 0 2932 193 60 20 chrX 100816822 100817162 -76156978 + L1M3c LINE L1 1742 5393 -817 4493 183 77 6 chrX 100817173 100818370 -76155770 + L1MA9 LINE L1 4872 6182 -130 183 80 0 0 chrX 100818370 100818395 -76155745 + (CA)n Simple_repeat Simple_repeat 2 26 0 4493 183 77 6 chrX 100818395 100818493 -76155647 + L1MA9 LINE L1 6182 6272 -40 4323 166 51 33 chrX 100818496 100819400 -76154740 + L1MB8 LINE L1 5263 6178 0 642 109 117 23 chrX 100819957 100820085 -76154055 + MER91C DNA MER1_type 1 140 0 852 264 8 29 chrX 100821112 100821358 -76152782 - MIR SINE MIR -15 247 7 213 289 48 19 chrX 100821901 100822005 -76152135 + MIR SINE MIR 107 213 -49 198 295 98 0 chrX 100822038 100822099 -76152041 - L2 LINE L2 -56 3216 3150 2363 85 0 10 chrX 100822353 100822658 -76151482 + AluSc SINE Alu 1 302 -7 471 292 46 20 chrX 100822677 100822872 -76151268 + L2 LINE L2 3114 3313 0 262 256 107 30 chrX 100823359 100823527 -76150613 + L1ME4a LINE L1 5938 6118 -3 309 51 0 0 chrX 100823779 100823818 -76150322 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 483 283 11 59 chrX 100824009 100824196 -76149944 - MER5B DNA MER1_type 0 178 1 2057 169 18 35 chrX 100825754 100826097 -76148043 + MER1B DNA MER1_type 1 337 0 307 248 110 55 chrX 100826777 100826886 -76147254 + MIR SINE MIR 33 147 -61 589 280 29 62 chrX 100826905 100827148 -76146992 - L2 LINE L2 -2 3311 3077 224 395 0 26 chrX 100827261 100827413 -76146727 - L2 LINE L2 -401 2913 2766 370 229 0 121 chrX 100828327 100828467 -76145673 - MER5A DNA MER1_type -6 183 61 311 297 44 11 chrX 100828469 100828560 -76145580 - MER5A DNA MER1_type -89 100 7 1514 164 31 65 chrX 100830653 100830976 -76143164 + AluJo SINE Alu 1 312 0 325 280 57 19 chrX 100831586 100831743 -76142397 + L1ME4a LINE L1 5956 6118 -3 195 290 32 0 chrX 100831947 100832009 -76142131 + MIR SINE MIR 16 79 -129 540 184 286 48 chrX 100832245 100832413 -76141727 - MER63A DNA MER1_type -2 208 1 5088 148 37 33 chrX 100832497 100833395 -76140745 + L1MB4 LINE L1 5270 5998 -182 309 192 0 51 chrX 100833395 100833473 -76140667 + L1MB5 LINE L1 6091 6164 -10 5088 148 37 33 chrX 100833473 100833644 -76140496 + L1MB4 LINE L1 5998 6167 -13 866 239 69 20 chrX 100836200 100836447 -76137693 - MIR SINE MIR 0 262 4 381 169 0 0 chrX 100836679 100836762 -76137378 + (AGGTG)n Simple_repeat Simple_repeat 3 85 0 947 222 14 32 chrX 100837134 100837355 -76136785 - MIR SINE MIR -21 241 25 1938 161 0 0 chrX 100837418 100837722 -76136418 + AluSx SINE Alu 1 304 -8 712 256 0 12 chrX 100837731 100837903 -76136237 - Charlie4 DNA MER1_type -1 1960 1791 663 270 0 0 chrX 100837908 100838067 -76136073 - Charlie4 DNA MER1_type -1698 263 105 1600 149 94 46 chrX 100838070 100838253 -76135887 - MER2 DNA MER2_type -1 344 137 1163 78 214 21 chrX 100838253 100838445 -76135695 + MER30 DNA MER1_type 1 229 -1 1600 149 94 46 chrX 100838445 100838589 -76135551 - MER2 DNA MER2_type -208 137 1 304 240 13 13 chrX 100838589 100838654 -76135486 - Charlie4 DNA MER1_type -1858 103 39 180 0 0 0 chrX 100838812 100838832 -76135308 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 530 353 73 24 chrX 100838916 100839466 -76134674 - L2 LINE L2 -180 3092 2502 194 308 0 0 chrX 100839466 100839518 -76134622 + L2 LINE L2 2671 2722 -592 1585 260 55 86 chrX 100839522 100839783 -76134357 + L1MC4a LINE L1 4900 5167 -1359 2518 75 0 0 chrX 100839783 100840090 -76134050 + AluSc SINE Alu 1 307 -2 1585 260 55 86 chrX 100840090 100840331 -76133809 + L1MC4a LINE L1 5167 5414 -1112 2164 95 0 7 chrX 100840331 100840638 -76133502 - AluSx SINE Alu 0 305 1 1585 260 55 86 chrX 100840638 100841034 -76133106 + L1MC4a LINE L1 5414 5783 -743 555 256 23 0 chrX 100841106 100841239 -76132901 + MIR SINE MIR 99 234 -28 413 269 116 51 chrX 100841284 100841656 -76132484 + L1MC4a LINE L1 5782 6177 -1631 330 346 5 129 chrX 100841823 100842233 -76131907 + L2 LINE L2 2914 3272 0 796 337 122 23 chrX 100842240 100842798 -76131342 - L2 LINE L2 -842 2472 1860 250 288 0 59 chrX 100843005 100843123 -76131017 - MER113 DNA MER1_type? -371 150 40 599 345 102 31 chrX 100843354 100843971 -76130169 - L2 LINE L2 -842 2472 1812 244 286 0 67 chrX 100844127 100844246 -76129894 - MER113 DNA MER1_type? -371 150 40 235 292 159 52 chrX 100844278 100844433 -76129707 - L2 LINE L2 -1516 1798 1661 1916 153 3 52 chrX 100844433 100844760 -76129380 + AluJb SINE Alu 1 311 -1 235 292 159 52 chrX 100844760 100845063 -76129077 - L2 LINE L2 -1653 1661 1291 520 162 0 54 chrX 100845856 100845967 -76128173 + L1MA7 LINE L1 6187 6291 0 345 255 71 28 chrX 100848706 100848847 -76125293 - MER103 DNA DNA -7 159 13 327 104 0 0 chrX 100849405 100849453 -76124687 + (CA)n Simple_repeat Simple_repeat 2 49 0 351 225 33 106 chrX 100849954 100850105 -76124035 - MIR SINE MIR -38 224 85 433 269 99 23 chrX 100850418 100850589 -76123551 + MIR SINE MIR 2 185 -77 21 0 0 0 chrX 100850589 100850610 -76123530 + AT_rich Low_complexity Low_complexity 1 21 0 709 297 41 9 chrX 100850624 100850843 -76123297 - MIR SINE MIR -22 240 15 217 325 9 18 chrX 100851342 100851456 -76122684 + GA-rich Low_complexity Low_complexity 1 113 0 571 245 39 54 chrX 100851493 100851559 -76122581 - MIR SINE MIR -2 260 195 2449 105 36 30 chrX 100851559 100851921 -76122219 + THE1B LTR MaLR 1 364 0 571 245 39 54 chrX 100851921 100852058 -76122082 - MIR SINE MIR -67 195 60 1059 217 0 0 chrX 100852091 100852266 -76121874 - FAM SINE Alu 0 175 1 347 183 192 17 chrX 100852830 100852950 -76121190 + MIR SINE MIR 82 222 -40 673 215 0 148 chrX 100852960 100853124 -76121016 - MIR SINE MIR -54 208 88 608 38 13 0 chrX 100853124 100853203 -76120937 + (CA)n Simple_repeat Simple_repeat 1 80 0 673 215 0 148 chrX 100853203 100853275 -76120865 - MIR SINE MIR -174 88 7 219 313 72 54 chrX 100853478 100853644 -76120496 + L2 LINE L2 2886 3054 -218 388 244 269 6 chrX 100853692 100853848 -76120292 + MIR SINE MIR 64 260 -2 1775 169 7 20 chrX 100853916 100854218 -76119922 - AluJo SINE Alu -14 298 1 292 355 50 33 chrX 100854280 100854401 -76119739 + L2 LINE L2 3137 3259 -13 22 0 0 0 chrX 100856483 100856505 -76117635 + AT_rich Low_complexity Low_complexity 1 22 0 185 178 22 0 chrX 100856960 100857005 -76117135 + GA-rich Low_complexity Low_complexity 3 48 0 1343 167 22 77 chrX 100857053 100857364 -76116776 + MLT1B LTR MaLR 1 294 -96 480 153 41 20 chrX 100857365 100857463 -76116677 + MIR SINE MIR 148 247 -15 1450 189 3 58 chrX 100857492 100857668 -76116472 - AluJo SINE Alu -16 296 143 1943 142 30 0 chrX 100857668 100857964 -76116176 - AluSc SINE Alu -4 305 1 1450 189 3 58 chrX 100857964 100858099 -76116041 - AluJo SINE Alu -169 143 2 373 161 97 43 chrX 100859111 100859204 -76114936 - MER5A DNA MER1_type -83 106 9 606 254 26 26 chrX 100859244 100859433 -76114707 + MER5A DNA MER1_type 1 189 0 514 252 60 13 chrX 100859441 100859573 -76114567 + MER5B DNA MER1_type 1 156 -33 521 136 29 39 chrX 100859573 100859676 -76114464 - L1MA7 LINE L1 0 6291 6190 514 252 60 13 chrX 100859676 100859712 -76114428 + MER5B DNA MER1_type 156 189 0 205 311 235 17 chrX 100859828 100859947 -76114193 + MIR3 SINE MIR 4 148 -60 2270 116 0 0 chrX 100860488 100860790 -76113350 - AluSx SINE Alu -10 302 1 1054 185 4 56 chrX 100861241 100861490 -76112650 + L1M4 LINE L1 4562 4797 -1349 265 217 67 0 chrX 100861545 100861605 -76112535 + L1M4 LINE L1 4015 4078 -2068 17044 68 3 0 chrX 100861616 100864488 -76109652 - L1PA6 LINE L1 -4 6150 3271 13755 97 23 17 chrX 100864488 100866513 -76107627 - L1PA6 LINE L1 -3478 2668 631 306 175 125 25 chrX 100866506 100866586 -76107554 + L1M4 LINE L1 4088 4175 -1971 * 316 239 0 22 chrX 100866583 100866675 -76107465 + L1MC4 LINE L1 6614 6703 -1339 1029 226 9 0 chrX 100866691 100866903 -76107237 + L1M4 LINE L1 4787 5000 -1146 201 139 0 0 chrX 100867193 100867236 -76106904 + (T)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chrX 100868252 100868274 -76105866 + AT_rich Low_complexity Low_complexity 1 22 0 189 214 24 12 chrX 100868934 100869018 -76105122 + GA-rich Low_complexity Low_complexity 3 87 0 565 267 115 6 chrX 100869502 100869667 -76104473 - MIR3 SINE MIR -19 189 7 572 234 169 6 chrX 100871338 100871514 -76102626 - MIR3 SINE MIR -3 205 8 207 0 0 0 chrX 100871518 100871541 -76102599 + (CA)n Simple_repeat Simple_repeat 2 24 0 9871 82 17 0 chrX 100873862 100876001 -76098139 - L1PA6 LINE L1 0 6154 3852 2426 121 0 3 chrX 100876006 100876346 -76097794 - L1PA8 LINE L1 0 6172 5834 189 121 0 0 chrX 100876734 100876767 -76097373 + (CA)n Simple_repeat Simple_repeat 2 34 0 282 357 31 0 chrX 100877397 100877495 -76096645 - MIR SINE MIR -63 145 45 200 290 172 43 chrX 100877717 100877810 -76096330 + L2 LINE L2 3147 3251 -21 279 236 0 0 chrX 100879052 100879124 -76095016 + (TA)n Simple_repeat Simple_repeat 1 72 0 351 0 0 0 chrX 100879528 100879567 -76094573 + (CA)n Simple_repeat Simple_repeat 2 40 0 1133 141 35 0 chrX 100880385 100880584 -76093556 - L1MB3 LINE L1 -1 6182 5977 4108 138 18 6 chrX 100880646 100881354 -76092786 - L1MB7 LINE L1 0 6184 5468 331 314 10 10 chrX 100882134 100882236 -76091904 - MIR SINE MIR -77 131 30 22 0 0 0 chrX 100883668 100883690 -76090450 + AT_rich Low_complexity Low_complexity 1 22 0 7289 20 7 0 chrX 100883774 100884628 -76089512 + L1PA2 LINE L1 5293 6152 -3 335 280 16 44 chrX 100884648 100884830 -76089310 + GA-rich Low_complexity Low_complexity 2 178 0 715 313 9 19 chrX 100885862 100886076 -76088064 + MIR SINE MIR 1 212 -50 22 35 0 0 chrX 100886548 100886577 -76087563 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chrX 100886836 100886860 -76087280 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 68 0 0 chrX 100886960 100887004 -76087136 + AT_rich Low_complexity Low_complexity 1 44 0 368 196 65 11 chrX 100887087 100887179 -76086961 - Charlie7 DNA MER1_type -8 2604 2508 * 1537 240 51 116 chrX 100887177 100887559 -76086581 - Charlie7 DNA MER1_type -1923 689 373 1047 160 113 9 chrX 100887559 100887772 -76086368 - MER46A DNA MER2_type -1 235 1 1537 240 51 116 chrX 100887772 100888098 -76086042 - Charlie7 DNA MER1_type -2239 373 27 400 257 171 104 chrX 100888186 100888349 -76085791 - MIR SINE MIR -6 256 73 2314 105 0 10 chrX 100888349 100888662 -76085478 + AluSg SINE Alu 1 310 0 400 257 171 104 chrX 100888662 100888720 -76085420 - MIR SINE MIR -189 73 20 396 228 162 36 chrX 100890353 100890520 -76083620 - MIR3 SINE MIR -1 207 20 38087 82 12 8 chrX 100891556 100894634 -76079506 + L1PA6 LINE L1 3 3069 -3085 2600 62 0 0 chrX 100894634 100894943 -76079197 + AluY SINE Alu 1 309 -2 38087 82 12 8 chrX 100894943 100898000 -76076140 + L1PA6 LINE L1 3069 6154 0 302 98 0 0 chrX 100898205 100898246 -76075894 - L2 LINE L2 -9 3304 3264 205 205 0 0 chrX 100898396 100898435 -76075705 + A-rich Low_complexity Low_complexity 1 39 0 386 238 119 10 chrX 100898590 100898691 -76075449 + L2 LINE L2 3201 3312 -1 21 0 0 0 chrX 100899100 100899121 -76075019 + AT_rich Low_complexity Low_complexity 1 21 0 17657 112 9 58 chrX 100900440 100903560 -76070580 + L1P LINE L1 471 3437 -2709 1546 47 0 0 chrX 100903547 100903738 -76070402 + L1PA7 LINE L1 5854 6044 -110 * 39 0 0 0 chrX 100905814 100905853 -76068287 + AT_rich Low_complexity Low_complexity 1 39 0 246 329 88 49 chrX 100906033 100906340 -76067800 + L2 LINE L2 2374 2692 -622 302 389 53 42 chrX 100906471 100906754 -76067386 + L2 LINE L2 2970 3255 -17 210 314 110 42 chrX 100908561 100908679 -76065461 - L2 LINE L2 -14 3258 3133 878 150 0 0 chrX 100909301 100909434 -76064706 + AluJb SINE Alu 3 135 -177 2002 144 0 0 chrX 100909434 100909740 -76064400 + AluSq SINE Alu 1 306 -7 1914 170 3 3 chrX 100910129 100910440 -76063700 + AluJb SINE Alu 1 311 -1 291 83 0 0 chrX 100910954 100910990 -76063150 + U2 snRNA snRNA 1 36 -152 529 291 126 5 chrX 100911365 100911571 -76062569 + MIR SINE MIR 2 232 -30 2211 88 0 0 chrX 100911645 100911918 -76062222 + AluSc SINE Alu 1 273 -36 242 66 82 33 chrX 100911920 100911981 -76062159 + GA-rich Low_complexity Low_complexity 4 67 0 181 119 0 143 chrX 100912290 100912332 -76061808 + MIR SINE MIR 39 74 -134 509 309 22 11 chrX 100912707 100912885 -76061255 + L3 LINE CR1 1390 1569 -8 418 355 99 14 chrX 100913217 100913499 -76060641 - L2 LINE L2 -105 3167 2862 224 297 221 14 chrX 100913534 100913756 -76060384 - L2 LINE L2 -536 2778 2511 542 287 113 5 chrX 100914054 100914249 -76059891 - MIR SINE MIR -10 252 37 802 177 0 7 chrX 100914326 100914467 -76059673 + FLAM_C SINE Alu 1 140 -3 1421 231 98 63 chrX 100914729 100915254 -76058886 - L2 LINE L2 -1 3312 2757 249 235 0 0 chrX 100915264 100915315 -76058825 - L2 LINE L2 -527 2787 2737 2126 145 30 3 chrX 100918042 100918380 -76055760 - MER7A DNA MER2_type 0 346 2 2438 50 27 7 chrX 100921607 100921908 -76052232 - AluY SINE Alu -4 307 1 22 56 0 0 chrX 100922426 100922462 -76051678 + AT_rich Low_complexity Low_complexity 1 36 0 46 19 0 0 chrX 100922551 100922604 -76051536 + AT_rich Low_complexity Low_complexity 1 53 0 3197 121 13 11 chrX 100922729 100923251 -76050889 + L1MB3 LINE L1 5661 6183 0 212 56 83 0 chrX 100923377 100923413 -76050727 + T-rich Low_complexity Low_complexity 2 40 0 772 236 118 5 chrX 100923859 100924079 -76050061 + MIR SINE MIR 16 260 -2 183 184 0 0 chrX 100924343 100924381 -76049759 + (CA)n Simple_repeat Simple_repeat 2 39 0 595 226 44 6 chrX 100924898 100925057 -76049083 - MER103 DNA DNA -1 165 1 268 274 186 20 chrX 100926660 100926762 -76047378 - L2 LINE L2 -4 3268 3150 362 260 245 39 chrX 100926806 100927014 -76047126 - MIR SINE MIR -11 251 1 2240 103 7 0 chrX 100928406 100928706 -76045434 - AluSg SINE Alu -8 302 1 5430 56 6 4 chrX 100928712 100929405 -76044735 - L1PA7 LINE L1 0 6154 5461 26 30 0 0 chrX 100929413 100929446 -76044694 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 100931499 100931522 -76042618 + AT_rich Low_complexity Low_complexity 1 23 0 1181 218 35 81 chrX 100931886 100932281 -76041859 - MLT1B LTR MaLR -13 377 1 254 331 92 35 chrX 100932346 100932488 -76041652 - MIR3 SINE MIR -27 181 32 36 19 0 19 chrX 100933944 100933968 -76040172 + AT_rich Low_complexity Low_complexity 1 24 -29 2214 68 32 4 chrX 100933968 100934248 -76039892 + AluY SINE Alu 1 288 -23 36 19 0 19 chrX 100934248 100934277 -76039863 + AT_rich Low_complexity Low_complexity 24 53 0 4981 163 35 13 chrX 100934541 100936220 -76037920 - L1PB4 LINE L1 -4 6152 4441 4460 247 66 20 chrX 100936220 100937574 -76036566 - L1MEc LINE L1 -3444 2771 1345 2213 102 3 0 chrX 100937574 100937885 -76036255 + AluSp SINE Alu 1 312 0 4460 247 66 20 chrX 100937885 100938557 -76035583 - L1MEc LINE L1 -4870 1345 705 1402 286 27 50 chrX 100938598 100939195 -76034945 - L1MEc LINE L1 -5779 617 35 2216 57 10 14 chrX 100939309 100939606 -76034534 + L1PA5 LINE L1 5859 6154 0 25 31 0 0 chrX 100940276 100940308 -76033832 + AT_rich Low_complexity Low_complexity 1 32 0 1180 205 15 27 chrX 100942046 100942305 -76031835 - MIR SINE MIR 0 262 7 682 230 176 10 chrX 100942590 100942903 -76031237 - L1ME4a LINE L1 0 6121 5757 540 272 25 0 chrX 100942904 100943062 -76031078 - L1ME4a LINE L1 -408 5713 5552 414 223 287 0 chrX 100943838 100943995 -76030145 + L2 LINE L2 3111 3312 -1 23 0 0 0 chrX 100944672 100944695 -76029445 + AT_rich Low_complexity Low_complexity 1 23 0 211 308 39 13 chrX 100944911 100944989 -76029151 - MIR SINE MIR -152 110 31 1894 179 34 14 chrX 100945437 100945795 -76028345 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chrX 100945839 100945862 -76028278 + AT_rich Low_complexity Low_complexity 1 23 0 2319 102 0 13 chrX 100945864 100946179 -76027961 + AluSx SINE Alu 1 311 -1 192 261 145 0 chrX 100946935 100947004 -76027136 + L2 LINE L2 2983 3061 -252 504 331 0 0 chrX 100947098 100947225 -76026915 + L2 LINE L2 3182 3308 -5 629 141 146 75 chrX 100947242 100947417 -76026723 + MER5A DNA MER1_type 1 189 0 348 285 124 0 chrX 100947620 100947757 -76026383 + MIR SINE MIR 102 255 -7 2076 133 0 7 chrX 100948412 100948713 -76025427 + AluJb SINE Alu 1 299 -13 254 304 62 106 chrX 100949904 100950131 -76024009 - L2 LINE L2 -11 3261 3045 4610 229 16 8 chrX 100951087 100951882 -76022258 - L1 LINE L1 -3004 3142 2342 6882 67 0 6 chrX 100951882 100953498 -76020642 + L1PA7 LINE L1 4543 6154 0 4610 229 16 8 chrX 100953498 100954059 -76020081 - L1 LINE L1 -3804 2342 1787 11436 39 7 0 chrX 100954160 100956352 -76017788 + L1PA4 LINE L1 3935 6152 -3 23 0 0 0 chrX 100956374 100956397 -76017743 + AT_rich Low_complexity Low_complexity 1 23 0 1314 168 91 19 chrX 100956407 100956770 -76017370 + L1M2c LINE L1 1751 2139 -4650 2168 121 47 27 chrX 100958377 100958629 -76015511 + L1MA5 LINE L1 5768 6035 -265 1891 105 139 0 chrX 100958629 100958924 -76015216 + MER1B DNA MER1_type 2 337 0 2168 121 47 27 chrX 100958924 100959077 -76015063 + L1MA5 LINE L1 6035 6183 -117 232 86 0 0 chrX 100961388 100961423 -76012717 - L1MB8 LINE L1 -9 6169 6135 191 250 0 0 chrX 100961583 100961623 -76012517 - MIR3 SINE MIR -19 189 150 711 181 54 6 chrX 100961842 100962008 -76012132 + MER104 DNA MER2_type 4 177 -3 653 235 27 8 chrX 100963231 100963404 -76010736 + MIR SINE MIR 53 228 -34 225 211 0 0 chrX 100963419 100963471 -76010669 + (CCA)n Simple_repeat Simple_repeat 1 52 0 540 274 239 0 chrX 100963491 100963692 -76010448 + MIR SINE MIR 13 261 -1 2037 153 3 17 chrX 100963713 100964060 -76010080 + L1MC1 LINE L1 5964 6305 -28 848 212 35 81 chrX 101065658 101065917 -75908223 + MIR SINE MIR 6 252 -10 235 287 9 17 chrX 101066360 101066475 -75907665 + L1ME3A LINE L1 5843 5956 -214 2053 158 3 0 chrX 101066843 101067147 -75906993 + AluJb SINE Alu 1 305 -7 186 119 17 68 chrX 101067561 101067620 -75906520 + (TA)n Simple_repeat Simple_repeat 1 56 0 181 231 51 0 chrX 101068639 101068678 -75905462 + MER5B DNA MER1_type 27 67 -111 867 314 99 32 chrX 101070162 101070970 -75903170 + L2 LINE L2 2422 3307 -6 355 296 59 20 chrX 101071148 101071300 -75902840 - L2 LINE L2 -11 3261 3104 2199 137 0 3 chrX 101071982 101072411 -75901729 - AluSx SINE Alu 0 428 1 547 261 158 30 chrX 101073582 101073785 -75900355 + MIR SINE MIR 32 260 -2 853 300 19 23 chrX 101074106 101074366 -75899774 + MIR SINE MIR 2 260 -2 328 274 80 0 chrX 101076763 101076876 -75897264 - MER103 DNA DNA -42 124 3 25 31 0 0 chrX 101079149 101079181 -75894959 + AT_rich Low_complexity Low_complexity 1 32 0 300 91 0 0 chrX 101079280 101079324 -75894816 + (TG)n Simple_repeat Simple_repeat 1 44 0 1429 182 0 0 chrX 101079872 101080092 -75894048 + MER58A DNA MER1_type 5 224 0 207 0 0 0 chrX 101080588 101080611 -75893529 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2226 99 13 0 chrX 101081948 101082250 -75891890 + AluSx SINE Alu 1 306 -6 204 276 0 0 chrX 101082854 101082912 -75891228 + CT-rich Low_complexity Low_complexity 1 58 0 1089 216 43 20 chrX 101083450 101083625 -75890515 - MIR SINE MIR 0 262 78 2540 132 22 0 chrX 101083625 101083981 -75890159 + THE1B LTR MaLR 1 364 0 1089 216 43 20 chrX 101083981 101084060 -75890080 - MIR SINE MIR -184 78 2 294 29 0 0 chrX 101085931 101085966 -75888174 + (TG)n Simple_repeat Simple_repeat 1 35 0 243 29 0 0 chrX 101085995 101086030 -75888110 - AluJb SINE Alu -4 298 264 3222 77 72 2 chrX 101086030 101086402 -75887738 + MLT2A1 LTR ERVL 1 406 -38 504 0 0 0 chrX 101086402 101086458 -75887682 + (TA)n Simple_repeat Simple_repeat 2 57 0 3222 77 72 2 chrX 101086458 101086500 -75887640 + MLT2A1 LTR ERVL 406 444 0 25447 49 5 9 chrX 101086500 101089546 -75884594 + HERVL-A1 LTR ERVL 1 3032 -2622 6731 66 12 0 chrX 101089545 101090367 -75883773 + HERVL-A1 LTR ERVL 3740 4571 -1083 * 9817 68 8 0 chrX 101090363 101091568 -75882572 + HERVL-A1 LTR ERVL 4441 5654 0 3089 110 50 19 chrX 101091568 101092072 -75882068 + MLT2A1 LTR ERVL 1 515 0 1719 132 0 50 chrX 101092073 101092354 -75881786 - AluJb SINE Alu -45 267 1 821 116 29 22 chrX 101092402 101092540 -75881600 - L1PA16 LINE L1 -283 5883 5745 437 254 0 22 chrX 101092526 101092664 -75881476 + L1PA16 LINE L1 6031 6165 -1 * 357 278 21 69 chrX 101092970 101093114 -75881026 + MIR SINE MIR 49 185 -77 2044 65 0 0 chrX 101093119 101093367 -75880773 + HERVL LTR ERVL 4027 4274 -1380 1158 151 33 11 chrX 101093370 101093907 -75880233 + (TA)n Simple_repeat Simple_repeat 1 548 0 198 103 0 0 chrX 101093909 101093938 -75880202 + (TG)n Simple_repeat Simple_repeat 2 30 0 2489 142 6 8 chrX 101094407 101094773 -75879367 + MLT1A1 LTR MaLR 1 365 0 309 261 43 26 chrX 101095154 101095269 -75878871 - MIR SINE MIR -112 150 34 567 176 254 0 chrX 101095546 101095688 -75878452 + MER5A DNA MER1_type 11 188 -1 236 30 30 0 chrX 101098300 101098333 -75875807 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2315 96 3 0 chrX 101098399 101098692 -75875448 + AluSg SINE Alu 3 296 -14 510 244 42 0 chrX 101099198 101099317 -75874823 - L2 LINE L2 -1 3312 3189 371 315 54 0 chrX 101099542 101099653 -75874487 + L2 LINE L2 3136 3252 -20 460 280 16 7 chrX 101101797 101101940 -75872200 + MIR SINE MIR 19 161 -65 2182 106 3 0 chrX 101102280 101102573 -75871567 + AluSx SINE Alu 1 294 -18 182 223 43 85 chrX 101103812 101103906 -75870234 + MIR SINE MIR 128 217 -45 22 0 0 0 chrX 101104586 101104608 -75869532 + AT_rich Low_complexity Low_complexity 1 22 0 2656 45 0 0 chrX 101104609 101104918 -75869222 + AluY SINE Alu 1 309 -2 863 165 0 0 chrX 101106114 101106241 -75867899 + AluJo SINE Alu 1 127 -175 686 135 42 0 chrX 101106241 101106370 -75867770 + AluJo SINE Alu 183 315 0 1042 225 49 12 chrX 101106866 101107110 -75867030 + MIR SINE MIR 9 261 -1 330 250 200 44 chrX 101107290 101107450 -75866690 - MIR3 SINE MIR -11 197 13 342 252 29 29 chrX 101107956 101108059 -75866081 - MER69 DNA AcHobo 0 2526 2424 * 777 190 21 0 chrX 101108028 101108170 -75865970 - MER69 DNA AcHobo -1079 147 3 372 230 27 0 chrX 101109026 101109100 -75865040 + MER21B LTR ERV1 12 87 -776 734 229 129 0 chrX 101109127 101109297 -75864843 + MER21B LTR ERV1 21 212 -651 31 0 0 0 chrX 101109301 101109332 -75864808 + AT_rich Low_complexity Low_complexity 1 31 0 1873 93 0 0 chrX 101109801 101110038 -75864102 + AluSc SINE Alu 73 309 0 3942 202 60 23 chrX 101111331 101112184 -75861956 - L1M4 LINE L1 -5648 894 11 283 296 116 102 chrX 101112603 101112965 -75861175 - L2 LINE L2 0 3272 2906 201 229 0 0 chrX 101114690 101114725 -75859415 + polypurine Low_complexity Low_complexity 2 36 0 461 241 56 9 chrX 101114758 101114866 -75859274 + MIR SINE MIR 33 145 -63 796 218 111 17 chrX 101114866 101115100 -75859040 - MER112 DNA MER1_type 0 256 1 1119 159 79 0 chrX 101115108 101115297 -75858843 - MER3 DNA MER1_type 0 209 6 604 289 25 0 chrX 101115975 101116134 -75858006 - MIR SINE MIR -99 163 1 229 378 0 0 chrX 101116164 101116238 -75857902 - L2 LINE L2 -666 2648 2575 265 278 45 155 chrX 101116988 101117297 -75856843 + L2 LINE L2 2995 3269 -3 386 338 93 60 chrX 101117351 101117748 -75856392 - L2 LINE L2 -8 3264 2855 2152 217 87 7 chrX 101118667 101119202 -75854938 + L1ME3 LINE L1 5587 6162 0 420 111 0 0 chrX 101119326 101119389 -75854751 + (CA)n Simple_repeat Simple_repeat 2 64 0 2022 167 21 34 chrX 101119582 101119960 -75854180 + MER93b LTR ERV1 1 373 0 467 298 47 7 chrX 101120028 101120205 -75853935 + MIR SINE MIR 30 212 -50 3101 54 3 0 chrX 101120563 101120917 -75853223 + THE1A LTR MaLR 1 355 0 2447 47 0 13 chrX 101121784 101122083 -75852057 + AluY SINE Alu 1 295 -16 1873 86 56 4 chrX 101122208 101122475 -75851665 + L1MA2 LINE L1 6024 6304 0 21 0 0 0 chrX 101122475 101122496 -75851644 + AT_rich Low_complexity Low_complexity 1 21 0 770 179 0 0 chrX 101122503 101122620 -75851520 + FLAM_C SINE Alu 2 118 -25 22 35 0 0 chrX 101122647 101122676 -75851464 + AT_rich Low_complexity Low_complexity 1 29 0 1861 165 11 0 chrX 101123278 101123563 -75850577 + AluJb SINE Alu 1 288 -24 2576 118 35 50 chrX 101123574 101123755 -75850385 + L1MA5A LINE L1 4452 4634 -1663 2576 97 25 62 chrX 101123755 101124093 -75850047 + L1MA5A LINE L1 5879 6199 -98 1637 154 28 25 chrX 101124093 101124379 -75849761 - AluJb SINE Alu -14 298 12 2576 97 25 62 chrX 101124379 101124472 -75849668 + L1MA5A LINE L1 6199 6294 -3 2576 118 35 50 chrX 101124472 101125596 -75848544 + L1MA5A LINE L1 4634 6294 -3 1863 140 0 3 chrX 101125598 101125884 -75848256 + L1MB2 LINE L1 5887 6171 0 7378 189 141 50 chrX 101126018 101127427 -75846713 + L1MD2 LINE L1 21 1678 -4862 688 79 20 0 chrX 101127427 101127528 -75846612 - L1MA8 LINE L1 -3 6288 6186 7378 189 141 50 chrX 101127528 101128185 -75845955 + L1MD2 LINE L1 1678 2274 -4266 868 161 20 45 chrX 101128186 101128385 -75845755 + L1MD2 LINE L1 3173 3366 -3174 803 304 54 55 chrX 101128382 101129030 -75845110 + L1M3d LINE L1 183 1089 -5214 * 3313 239 132 16 chrX 101129181 101130344 -75843796 + L1M3d LINE L1 777 2059 -4325 2079 108 49 0 chrX 101130344 101130630 -75843510 + AluSq SINE Alu 1 300 -13 3313 239 132 16 chrX 101130630 101131020 -75843120 + L1M3d LINE L1 2059 2402 -3982 * 4916 143 34 40 chrX 101131016 101131175 -75842965 + L1MB1 LINE L1 4763 4921 -1247 3335 86 23 8 chrX 101131175 101131652 -75842488 + L1PA11 LINE L1 5687 6171 -3 4916 143 34 40 chrX 101131652 101132908 -75841232 + L1MB1 LINE L1 4921 6168 0 6478 219 84 28 chrX 101132919 101136114 -75838026 + L1MD2 LINE L1 3369 6753 0 1318 62 23 0 chrX 101136331 101136507 -75837633 + L1PA6 LINE L1 5969 6148 -6 812 210 55 10 chrX 101136874 101137074 -75837066 - MER3 DNA MER1_type 0 209 1 712 213 134 42 chrX 101137208 101137447 -75836693 + MIR SINE MIR 2 262 0 404 82 27 0 chrX 101137761 101137834 -75836306 + (TAAAA)n Simple_repeat Simple_repeat 3 77 0 389 277 0 0 chrX 101138060 101138154 -75835986 + Cheshire DNA MER1_type 13 106 -2314 * 1299 127 39 0 chrX 101138148 101138377 -75835763 + Cheshire DNA MER1_type 1505 1742 -678 1088 151 8 104 chrX 101138377 101138469 -75835671 + L1M4 LINE L1 5430 5529 -655 2173 138 3 0 chrX 101138469 101138780 -75835360 + AluSx SINE Alu 1 312 0 1088 151 8 104 chrX 101138780 101138946 -75835194 + L1M4 LINE L1 5529 5663 -521 1912 163 3 0 chrX 101138955 101139250 -75834890 + AluJb SINE Alu 1 296 -16 1870 110 103 0 chrX 101139252 101139525 -75834615 + AluSx SINE Alu 1 301 -11 1496 132 79 0 chrX 101139525 101139805 -75834335 + Cheshire DNA MER1_type 1730 2031 -389 1298 186 115 26 chrX 101139809 101140158 -75833982 + L1MC3 LINE L1 7310 7689 -96 4014 189 14 15 chrX 101140158 101141421 -75832719 + L1MB8 LINE L1 4903 6161 -17 311 188 58 0 chrX 101141424 101141493 -75832647 + L1MD3 LINE L1 7905 7977 -18 25 0 0 0 chrX 101141498 101141523 -75832617 + AT_rich Low_complexity Low_complexity 1 25 0 2270 119 27 10 chrX 101141523 101141925 -75832215 + Cheshire DNA MER1_type 2012 2420 0 272 214 0 29 chrX 101143417 101143487 -75830653 - L2 LINE L2 -23 3249 3182 649 259 98 26 chrX 101144128 101144507 -75829633 + L1MC5 LINE L1 7509 7914 -47 2402 90 3 0 chrX 101144615 101144927 -75829213 - AluSq SINE Alu 0 313 1 22 56 0 0 chrX 101144984 101145020 -75829120 + AT_rich Low_complexity Low_complexity 1 36 0 556 290 80 18 chrX 101145105 101145329 -75828811 + MIR SINE MIR 14 251 -11 651 167 92 0 chrX 101145949 101146069 -75828071 + FRAM SINE Alu 40 170 -6 1830 220 94 18 chrX 101146869 101147251 -75826889 - L1ME4a LINE L1 0 6121 5770 1895 159 0 7 chrX 101147251 101147540 -75826600 + AluJo SINE Alu 1 287 -25 1830 220 94 18 chrX 101147540 101147828 -75826312 - L1ME4a LINE L1 -351 5770 5380 362 300 70 25 chrX 101147874 101148074 -75826066 - L1ME4a LINE L1 -814 5332 5124 479 244 28 103 chrX 101148589 101148802 -75825338 + MIR SINE MIR 57 253 -9 264 263 46 72 chrX 101148807 101148959 -75825181 + MIR SINE MIR 65 212 -50 1970 121 21 0 chrX 101151150 101151430 -75822710 + AluSx SINE Alu 1 286 -26 471 191 0 0 chrX 101152262 101152346 -75821794 + MER21B LTR ERV1 12 95 -768 2294 220 123 30 chrX 101152347 101153048 -75821092 + MER21B LTR ERV1 47 812 -51 643 289 35 0 chrX 101154090 101154287 -75819853 - L3 LINE CR1 -721 856 653 368 272 40 32 chrX 101154439 101154564 -75819576 - L3 LINE CR1 -912 665 540 874 222 25 28 chrX 101155060 101155356 -75818784 + L1ME2 LINE L1 5878 6333 -1 2291 93 0 0 chrX 101155861 101156151 -75817989 - AluSx SINE Alu -2 310 21 2151 95 0 10 chrX 101156472 101156767 -75817373 + AluSc SINE Alu 1 292 -17 217 318 0 15 chrX 101157735 101157801 -75816339 + L2 LINE L2 3240 3304 -9 603 201 81 0 chrX 101157881 101158030 -75816110 + ORSL DNA AcHobo 3 163 -112 403 235 47 0 chrX 101158031 101158116 -75816024 + MIR SINE MIR 173 261 -1 1261 238 99 45 chrX 101159070 101159708 -75814432 - HAL1 LINE L1 -19 2488 1817 578 333 49 34 chrX 101159737 101160001 -75814139 + L2 LINE L2 3004 3271 -1 578 215 19 42 chrX 101160459 101160649 -75813491 + MIR SINE MIR 19 199 -62 263 326 23 0 chrX 101160848 101160934 -75813206 + MIR SINE MIR 148 235 -27 23 0 0 0 chrX 101161900 101161923 -75812217 + AT_rich Low_complexity Low_complexity 1 23 0 2156 117 3 0 chrX 101161926 101162225 -75811915 + AluSq SINE Alu 1 300 -13 186 43 0 0 chrX 101162563 101162586 -75811554 + (T)n Simple_repeat Simple_repeat 1 23 0 180 347 69 0 chrX 101162706 101162778 -75811362 - L2 LINE L2 -2 3270 3194 291 172 25 49 chrX 101163026 101163148 -75810992 + (TCTA)n Simple_repeat Simple_repeat 2 120 0 457 250 117 27 chrX 101163305 101163493 -75810647 + MIR SINE MIR 13 217 -45 602 314 69 48 chrX 101164467 101164801 -75809339 + L2 LINE L2 2928 3268 -4 317 275 124 25 chrX 101165527 101165672 -75808468 - MIR SINE MIR -82 180 23 2363 121 111 5 chrX 101165719 101166106 -75808034 + MSTA LTR MaLR 1 428 0 235 261 0 0 chrX 101168084 101168130 -75806010 - MIR3 SINE MIR -22 186 141 229 279 0 16 chrX 101168246 101168307 -75805833 - MIR SINE MIR -64 144 85 192 307 27 13 chrX 101168412 101168487 -75805653 + MIR3 SINE MIR 4 79 -129 189 323 100 62 chrX 101168494 101168624 -75805516 + MIR3 SINE MIR 38 172 -36 399 248 0 35 chrX 101168769 101168910 -75805230 - MER113 DNA MER1_type? -385 136 1 416 270 151 26 chrX 101169049 101169201 -75804939 - MIR3 SINE MIR -11 197 27 286 273 102 0 chrX 101171074 101171162 -75802978 - MIR SINE MIR -78 130 34 234 286 12 0 chrX 101172054 101172138 -75802002 - MER20 DNA MER1_type 0 219 135 643 278 50 20 chrX 101173630 101173828 -75800312 - MIR SINE MIR 0 262 59 182 257 257 10 chrX 101174944 101175045 -75799095 - MIR SINE MIR -56 206 81 333 172 0 0 chrX 101175491 101175555 -75798585 + (CA)n Simple_repeat Simple_repeat 2 65 0 309 315 0 0 chrX 101176770 101176859 -75797281 + MER81 DNA DNA 7 95 -19 5026 188 23 19 chrX 101176888 101178223 -75795917 - L1MD2 LINE L1 -3 6616 4235 1769 205 49 31 chrX 101178228 101178681 -75795459 + MLT1C LTR MaLR 7 467 0 4716 211 26 24 chrX 101178684 101180476 -75793664 - L1MD2 LINE L1 -2169 4237 2479 1748 110 82 52 chrX 101180476 101180804 -75793336 - MER44D DNA MER2_type -1 608 1 1853 205 96 13 chrX 101180830 101181444 -75792696 - L1MD2 LINE L1 -3995 2411 1747 433 158 10 0 chrX 101181438 101181539 -75792601 - L1MD2 LINE L1 -5141 1268 1167 * 302 284 26 43 chrX 101181563 101181679 -75792461 + L1MC5 LINE L1 7451 7564 -397 776 98 0 30 chrX 101181694 101181827 -75792313 - L1MA7 LINE L1 0 6291 6163 1752 165 10 14 chrX 101181828 101182015 -75792125 - AluJb SINE Alu 0 312 126 189 0 0 0 chrX 101182015 101182036 -75792104 + (TG)n Simple_repeat Simple_repeat 2 22 0 1752 165 10 14 chrX 101182036 101182162 -75791978 - AluJb SINE Alu -186 126 1 1754 144 22 55 chrX 101182186 101182219 -75791921 - L1MA7 LINE L1 -130 6161 6128 880 94 0 0 chrX 101182219 101182346 -75791794 - L1PB1 LINE L1 -4 6147 6021 1754 144 22 55 chrX 101182346 101182673 -75791467 - L1MA7 LINE L1 -163 6128 5813 * 2132 227 51 56 chrX 101182656 101183720 -75790420 - L1MD2 LINE L1 -5225 1184 7 297 140 0 0 chrX 101183727 101183777 -75790363 + Charlie1 DNA MER1_type 2712 2761 0 411 277 0 0 chrX 101185013 101185107 -75789033 - L2 LINE L2 -11 3261 3168 908 192 33 0 chrX 101185582 101185764 -75788376 + MER3 DNA MER1_type 1 188 -21 413 68 0 0 chrX 101186051 101186110 -75788030 + L1PA3 LINE L1 6097 6155 0 2251 87 7 0 chrX 101186176 101186464 -75787676 + AluSp SINE Alu 1 290 -23 1200 100 0 0 chrX 101186476 101186688 -75787452 + (TA)n Simple_repeat Simple_repeat 1 212 0 243 0 0 0 chrX 101186687 101186714 -75787426 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 309 214 0 0 chrX 101187265 101187321 -75786819 - L2 LINE L2 0 3272 3217 222 37 0 0 chrX 101189226 101189253 -75784887 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 1968 60 4 0 chrX 101189306 101189555 -75784585 - L1PA7 LINE L1 -1 6153 5904 259 193 18 18 chrX 101190451 101190508 -75783632 - MIR3 SINE MIR -3 205 149 22 0 0 0 chrX 101190598 101190620 -75783520 + AT_rich Low_complexity Low_complexity 1 22 0 42161 37 2 1 chrX 101190620 101196762 -75777378 - L1PA3 LINE L1 -3 6152 6 342 291 127 0 chrX 101196852 101196962 -75777178 - MIR3 SINE MIR -48 160 37 436 205 131 8 chrX 101197177 101197299 -75776841 + MIR SINE MIR 118 254 -8 381 315 9 9 chrX 101198118 101198229 -75775911 - MIR SINE MIR -150 112 2 256 227 30 15 chrX 101198541 101198607 -75775533 + CT-rich Low_complexity Low_complexity 1 67 0 29 0 0 0 chrX 101198723 101198752 -75775388 + AT_rich Low_complexity Low_complexity 1 29 0 1167 223 187 57 chrX 101198758 101199145 -75774995 + MLT1E LTR MaLR 1 475 -118 2581 218 26 6 chrX 101199145 101199692 -75774448 + MER74A LTR ERVL 1 558 0 1167 223 187 57 chrX 101199692 101199829 -75774311 + MLT1E LTR MaLR 475 593 0 4608 25 0 0 chrX 101200078 101200632 -75773508 - L1PA5 LINE L1 -294 5860 5307 1728 43 0 0 chrX 101200632 101200841 -75773299 + L1PA5 LINE L1 5942 6152 -2 21 57 0 0 chrX 101200841 101200876 -75773264 + AT_rich Low_complexity Low_complexity 1 35 0 529 246 15 31 chrX 101200876 101201006 -75773134 - MER5B DNA MER1_type -50 128 1 771 226 248 42 chrX 101203129 101203584 -75770556 - MLT1H LTR MaLR 0 549 1 457 265 94 0 chrX 101203591 101203737 -75770403 - MIR3 SINE MIR -65 143 5 21 36 0 0 chrX 101203989 101204017 -75770123 + AT_rich Low_complexity Low_complexity 1 28 0 657 246 179 9 chrX 101205233 101205457 -75768683 + MIR SINE MIR 1 262 0 181 85 0 85 chrX 101206124 101206171 -75767969 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2023 193 23 66 chrX 101206340 101206868 -75767272 + MLT1D LTR MaLR 1 505 0 199 304 0 0 chrX 101207012 101207058 -75767082 - L2 LINE L2 -17 3296 3251 433 305 80 37 chrX 101207876 101208150 -75765990 + L2 LINE L2 2720 3000 -272 225 167 21 42 chrX 101208511 101208559 -75765581 + MER5A DNA MER1_type 120 166 -23 * 263 221 15 44 chrX 101208516 101208584 -75765556 - MER5A DNA MER1_type -114 75 10 902 198 39 29 chrX 101208677 101208884 -75765256 - MIR SINE MIR -34 228 20 383 282 121 11 chrX 101209766 101209940 -75764200 + MER117 DNA MER1_type 5 197 0 500 242 176 13 chrX 101209948 101210101 -75764039 + MER5B DNA MER1_type 1 178 0 337 291 40 27 chrX 101210180 101210328 -75763812 + MER5B DNA MER1_type 17 166 -12 386 321 8 15 chrX 101210186 101210317 -75763823 - MER5A DNA MER1_type -24 165 36 435 268 261 7 chrX 101210395 101210533 -75763607 + MER5B DNA MER1_type 6 178 0 550 273 140 7 chrX 101212225 101212368 -75761772 + MIR3 SINE MIR 20 181 -27 930 195 47 0 chrX 101212457 101212647 -75761493 + MER3 DNA MER1_type 9 207 -2 2074 107 81 29 chrX 101213072 101213418 -75760722 - THE1B LTR MaLR 0 364 1 37 76 0 0 chrX 101213613 101213692 -75760448 + AT_rich Low_complexity Low_complexity 1 79 0 336 239 42 0 chrX 101213922 101213993 -75760147 - MER117 DNA MER1_type -78 119 46 652 260 12 24 chrX 101214093 101214262 -75759878 - MIR3 SINE MIR -5 203 37 1375 297 18 9 chrX 101216000 101216434 -75757706 - LTR16B LTR ERVL -2 462 25 207 139 0 0 chrX 101216934 101216970 -75757170 + (TATAG)n Simple_repeat Simple_repeat 2 37 0 942 176 6 12 chrX 101216996 101217154 -75756986 - MER5A DNA MER1_type -25 164 6 995 214 30 38 chrX 101217154 101217416 -75756724 + MIR SINE MIR 3 262 0 434 204 143 0 chrX 101217714 101217812 -75756328 - MIR SINE MIR -62 146 35 237 65 0 0 chrX 101218561 101218592 -75755548 + (T)n Simple_repeat Simple_repeat 1 31 0 287 378 36 0 chrX 101220190 101220301 -75753839 - L2 LINE L2 -54 3218 3104 4456 137 24 6 chrX 101220462 101221265 -75752875 - L1 LINE L1 -1840 4306 3490 4251 128 3 3 chrX 101221265 101221938 -75752202 + L1MA6 LINE L1 5627 6300 0 456 211 163 16 chrX 101222090 101222213 -75751927 + L2 LINE L2 3171 3311 -2 312 311 96 17 chrX 101222202 101222379 -75751761 - L2 LINE L2 -135 3178 2988 * 186 290 87 43 chrX 101224486 101224544 -75749596 - L2 LINE L2 -5 3267 3204 3757 119 4 6 chrX 101224544 101225072 -75749068 - MER1A DNA MER1_type 0 527 1 381 356 6 12 chrX 101225227 101225387 -75748753 - L2 LINE L2 -217 3055 2897 377 144 168 8 chrX 101225471 101225596 -75748544 - Charlie7 DNA MER1_type 0 2612 2468 316 260 40 10 chrX 101225613 101225713 -75748427 - Charlie7 DNA MER1_type -2509 103 1 274 341 87 56 chrX 101225899 101226254 -75747886 - L2 LINE L2 -542 2772 2407 757 260 87 26 chrX 101226406 101226637 -75747503 - MIR SINE MIR -16 246 2 1051 201 0 0 chrX 101227214 101227408 -75746732 + MER58A DNA MER1_type 31 224 0 326 236 0 0 chrX 101227418 101227490 -75746650 + LTR67 LTR ERVL 486 557 0 597 259 63 0 chrX 101227491 101227649 -75746491 - MIR SINE MIR -61 201 34 238 281 62 0 chrX 101228058 101228122 -75746018 + L2 LINE L2 3176 3243 -70 759 154 112 65 chrX 101230071 101230148 -75743992 + MER5B DNA MER1_type 1 73 -105 1791 184 40 43 chrX 101230148 101230523 -75743617 - MLT1A2 LTR MaLR 0 374 1 759 154 112 65 chrX 101230523 101230614 -75743526 + MER5B DNA MER1_type 73 177 -1 409 200 133 0 chrX 101230632 101230722 -75743418 + MER5A DNA MER1_type 10 111 -78 918 152 7 0 chrX 101231406 101231557 -75742583 + L1MB3 LINE L1 6030 6181 -2 1303 136 14 84 chrX 101231575 101231650 -75742490 + L1MD3 LINE L1 7729 7808 -187 696 231 23 0 chrX 101231650 101231780 -75742360 + FLAM_A SINE Alu 1 133 0 1303 136 14 84 chrX 101231780 101231991 -75742149 + L1MD3 LINE L1 7808 7995 0 272 63 95 11 chrX 101232204 101232299 -75741841 + (TA)n Simple_repeat Simple_repeat 1 103 0 867 291 36 0 chrX 101232328 101232579 -75741561 + MIR SINE MIR 2 261 -1 377 190 90 49 chrX 101232645 101232836 -75741304 - L1ME3A LINE L1 -1 6169 5961 251 324 108 7 chrX 101233081 101233229 -75740911 - L2 LINE L2 -1 3271 3109 434 269 61 61 chrX 101233401 101233495 -75740645 + L1ME3 LINE L1 4491 4584 -1562 2161 127 0 0 chrX 101233495 101233817 -75740323 - AluSx SINE Alu 0 312 1 434 269 61 61 chrX 101233817 101234064 -75740076 + L1ME3 LINE L1 4583 4832 -1314 807 317 45 36 chrX 101234376 101235309 -75738831 + L1ME3 LINE L1 4936 5884 -278 210 67 0 0 chrX 101235361 101235373 -75738767 + (CA)n Simple_repeat Simple_repeat 2 13 -18 2236 99 0 10 chrX 101235373 101235665 -75738475 + AluSg1 SINE Alu 3 291 -18 210 67 0 0 chrX 101235665 101235682 -75738458 + (CA)n Simple_repeat Simple_repeat 12 31 0 623 67 36 27 chrX 101235690 101235924 -75738216 + (TAGA)n Simple_repeat Simple_repeat 1 236 0 207 189 0 0 chrX 101235924 101235961 -75738179 + GA-rich Low_complexity Low_complexity 1 37 0 368 387 44 21 chrX 101236174 101236666 -75737474 - L2 LINE L2 -191 3081 2579 385 295 133 40 chrX 101236810 101237186 -75736954 - L2 LINE L2 -1206 2108 1698 238 309 80 40 chrX 101238748 101238949 -75735191 + L2 LINE L2 1237 1445 -1869 265 367 70 19 chrX 101239078 101239236 -75734904 + L2 LINE L2 3088 3253 -19 321 282 183 15 chrX 101239514 101239663 -75734477 + MIR SINE MIR 45 216 -46 225 0 0 0 chrX 101240862 101240887 -75733253 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 520 273 35 17 chrX 101240966 101241138 -75733002 - MIR SINE MIR -56 206 32 593 250 120 16 chrX 101242108 101242300 -75731840 + MIR SINE MIR 1 212 -50 414 0 0 0 chrX 101242654 101242700 -75731440 + (TATG)n Simple_repeat Simple_repeat 3 48 0 180 311 122 0 chrX 101242957 101243031 -75731109 + MIR SINE MIR 16 98 -110 211 363 50 0 chrX 101243493 101243573 -75730567 - L2 LINE L2 0 3313 3230 746 292 66 33 chrX 101243617 101243983 -75730157 + L2 LINE L2 2296 2673 -641 185 323 0 0 chrX 101244122 101244184 -75729956 - MIR SINE MIR 0 262 201 853 222 29 6 chrX 101244185 101244356 -75729784 + MER5A DNA MER1_type 1 175 -14 412 288 123 24 chrX 101244384 101244554 -75729586 - MIR SINE MIR -70 192 6 2368 98 9 6 chrX 101244918 101245236 -75728904 + THE1C LTR MaLR 1 319 -56 365 238 158 0 chrX 101245467 101245568 -75728572 + L2 LINE L2 3197 3313 0 206 300 164 18 chrX 101245705 101245815 -75728325 + MIR3 SINE MIR 81 206 -2 3128 138 30 38 chrX 101245851 101246459 -75727681 + MER4B LTR ERV1 3 779 0 567 317 237 7 chrX 101246525 101246812 -75727328 - L2 LINE L2 0 3272 2920 1079 283 58 38 chrX 101246829 101247275 -75726865 - L2 LINE L2 -658 2656 2202 381 250 129 8 chrX 101247557 101247689 -75726451 - MIR SINE MIR -48 214 67 415 238 58 107 chrX 101248606 101248812 -75725328 + MIR3 SINE MIR 10 205 -3 3233 76 2 7 chrX 101250382 101250789 -75723351 - L1PA7 LINE L1 0 6154 5750 208 179 26 0 chrX 101250871 101250910 -75723230 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 1983 114 51 0 chrX 101252669 101252942 -75721198 - AluSg SINE Alu -19 291 5 2701 205 20 0 chrX 101253303 101253795 -75720345 - LTR53 LTR ERVL -3 516 15 404 185 32 0 chrX 101257331 101257426 -75716714 - MIR SINE MIR -64 198 101 1008 305 90 13 chrX 101257843 101258308 -75715832 - LTR33 LTR ERVL -8 513 13 655 179 295 35 chrX 101260075 101260248 -75713892 + MER20 DNA MER1_type 1 218 -1 377 280 61 0 chrX 101261530 101261662 -75712478 + MER58C DNA MER1_type 76 215 0 372 270 140 6 chrX 101262957 101263114 -75711026 - MIR3 SINE MIR -6 202 23 220 288 15 0 chrX 101264317 101264383 -75709757 + CT-rich Low_complexity Low_complexity 3 69 0 2820 208 13 14 chrX 101265136 101265766 -75708374 - L1M4 LINE L1 -3201 2945 2317 232 145 53 79 chrX 101265781 101265857 -75708283 - L1MC5 LINE L1 -30 7931 7858 2021 164 30 12 chrX 101265876 101266211 -75707929 + MER2 DNA MER2_type 4 344 0 245 159 16 63 chrX 101266221 101266274 -75707866 + (TCCA)n Simple_repeat Simple_repeat 2 53 -8 2132 67 4 11 chrX 101266274 101266541 -75707599 - L1PA10 LINE L1 -2 6166 5902 245 159 16 63 chrX 101266541 101266550 -75707590 + (TCCA)n Simple_repeat Simple_repeat 53 61 0 1973 218 50 24 chrX 101266666 101267162 -75706978 - L1ME2 LINE L1 -16 6148 5640 412 295 30 45 chrX 101267508 101267708 -75706432 - MER117 DNA MER1_type 0 197 1 246 176 0 0 chrX 101268717 101268768 -75705372 + CT-rich Low_complexity Low_complexity 2 52 0 212 77 26 0 chrX 101268765 101268804 -75705336 + (TC)n Simple_repeat Simple_repeat 2 41 0 * 750 254 79 21 chrX 101271045 101271285 -75702855 + MIR SINE MIR 4 257 -5 1242 253 116 42 chrX 101271339 101272073 -75702067 - L2 LINE L2 -7 3306 2534 530 219 81 38 chrX 101272091 101272434 -75701706 - L1MC5 LINE L1 -44 7917 7514 242 242 116 21 chrX 101272439 101272534 -75701606 - L2 LINE L2 -775 2539 2436 209 232 159 0 chrX 101272771 101272840 -75701300 + MIR SINE MIR 36 115 -93 2669 118 5 13 chrX 101272875 101273272 -75700868 - L1MA4A LINE L1 -6 6297 5904 1587 163 52 3 chrX 101273331 101273638 -75700502 + MER33 DNA MER1_type 1 322 -2 483 311 11 48 chrX 101273730 101273912 -75700228 - MIR3 SINE MIR -62 146 3 180 307 73 47 chrX 101273953 101274103 -75700037 - L3b LINE CR1 -115 1468 1315 368 312 36 4 chrX 101274268 101274417 -75699723 + MIR SINE MIR 28 180 -63 216 183 28 84 chrX 101275535 101275606 -75698534 - L2 LINE L2 -1 3271 3205 342 0 0 0 chrX 101275967 101276005 -75698135 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 274 0 68 chrX 101276858 101276931 -75697209 + MIR3 SINE MIR 101 168 -40 2386 91 0 0 chrX 101278206 101278502 -75695638 + AluSx SINE Alu 1 296 -16 543 214 10 0 chrX 101279521 101279624 -75694516 - MER97b DNA MER1_type? -949 104 1 442 354 82 0 chrX 101281961 101282119 -75692021 + MIR3 SINE MIR 19 189 -19 358 298 0 0 chrX 101283007 101283091 -75691049 + L2 LINE L2 3185 3268 -4 435 310 86 11 chrX 101284317 101284491 -75689649 - MER5A DNA MER1_type -1 188 2 244 253 266 0 chrX 101284851 101284930 -75689210 + MER5B DNA MER1_type 1 100 -78 630 313 139 10 chrX 101286767 101287055 -75687085 + L3 LINE CR1 1218 1542 -35 183 184 0 0 chrX 101287491 101287529 -75686611 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 357 337 63 17 chrX 101287769 101287944 -75686196 + L2 LINE L2 2879 3061 -211 2157 129 7 0 chrX 101288366 101288668 -75685472 - AluSx SINE Alu -8 304 1 1602 179 190 20 chrX 101289053 101289443 -75684697 - MSTB2 LTR MaLR 0 457 2 727 235 118 17 chrX 101291473 101291711 -75682429 - MIR SINE MIR 0 262 1 294 29 0 0 chrX 101293298 101293333 -75680807 + (TG)n Simple_repeat Simple_repeat 2 36 0 656 254 35 0 chrX 101293437 101293606 -75680534 - MIR3 SINE MIR -4 204 30 810 185 73 17 chrX 101293739 101293917 -75680223 + MER5A DNA MER1_type 2 189 0 330 302 31 21 chrX 101297297 101297393 -75676747 - MIR SINE MIR -93 115 19 2092 95 49 0 chrX 101297450 101297734 -75676406 - AluSq SINE Alu -15 298 1 647 213 0 8 chrX 101297832 101297959 -75676181 + MIR SINE MIR 29 154 -108 272 351 119 48 chrX 101299416 101299837 -75674303 + L2 LINE L2 2812 3262 -10 686 291 38 21 chrX 101299921 101300158 -75673982 + MIR SINE MIR 9 249 -13 333 0 0 0 chrX 101300279 101300316 -75673824 + (CA)n Simple_repeat Simple_repeat 1 37 0 2288 97 3 31 chrX 101301388 101301707 -75672433 - AluSg SINE Alu 0 310 1 295 300 169 60 chrX 101302432 101302782 -75671358 - L3 LINE CR1 -8 1569 1182 687 228 39 11 chrX 101303473 101303653 -75670487 - MIR SINE MIR 0 262 78 21 36 0 0 chrX 101304627 101304655 -75669485 + AT_rich Low_complexity Low_complexity 1 28 0 413 160 9 132 chrX 101304819 101304886 -75669254 - LTR33 LTR ERVL -3 518 467 1474 159 3 92 chrX 101304886 101305201 -75668939 + AluJo SINE Alu 11 297 -15 413 160 9 132 chrX 101305201 101305239 -75668901 - LTR33 LTR ERVL -54 467 426 258 238 38 25 chrX 101305234 101305314 -75668826 - LTR33 LTR ERVL -440 81 1 * 1168 273 46 43 chrX 101305389 101305485 -75668655 - MLT1J2 LTR MaLR -95 355 261 1246 178 37 5 chrX 101305485 101305699 -75668441 - MER58A DNA MER1_type 0 224 4 1168 273 46 43 chrX 101305699 101305950 -75668190 - MLT1J2 LTR MaLR -189 261 7 323 152 0 106 chrX 101306108 101306174 -75667966 - MER103 DNA DNA -54 112 54 2453 50 3 41 chrX 101306485 101306805 -75667335 - AluY SINE Alu -3 308 1 25 51 0 0 chrX 101306870 101306909 -75667231 + AT_rich Low_complexity Low_complexity 1 39 0 3162 142 13 15 chrX 101307066 101307587 -75666553 + LTR5 LTR ERVK 450 969 0 1877 143 3 34 chrX 101307813 101308140 -75666000 - AluSq SINE Alu 0 319 2 360 286 27 11 chrX 101308539 101308748 -75665392 + MLT1E1 LTR MaLR 4 262 -392 240 244 24 24 chrX 101310084 101310166 -75663974 + MIR SINE MIR 116 197 -65 351 287 8 62 chrX 101310868 101310997 -75663143 + MIR3 SINE MIR 3 124 -84 821 165 0 8 chrX 101311199 101311332 -75662808 - FLAM_C SINE Alu 0 133 2 596 282 60 32 chrX 101311448 101311696 -75662444 + MIR SINE MIR 5 259 -3 180 0 0 0 chrX 101312577 101312597 -75661543 + (T)n Simple_repeat Simple_repeat 1 20 0 1315 154 4 90 chrX 101312675 101312942 -75661198 - AluJb SINE Alu -8 304 61 326 283 46 35 chrX 101312999 101313172 -75660968 + L1ME4a LINE L1 5935 6109 -12 240 340 117 64 chrX 101313277 101313559 -75660581 - L2 LINE L2 -78 3194 2898 180 297 47 0 chrX 101313633 101313697 -75660443 - MIR SINE MIR -21 241 175 338 248 8 78 chrX 101314403 101314490 -75659650 + MIR3 SINE MIR 79 156 -52 1284 179 42 0 chrX 101314490 101314702 -75659438 + MER58A DNA MER1_type 4 224 0 338 248 8 78 chrX 101314702 101314743 -75659397 + MIR3 SINE MIR 156 198 -10 397 316 50 0 chrX 101314870 101315009 -75659131 - L2 LINE L2 -2 3270 3125 414 233 90 58 chrX 101315131 101315150 -75658990 - L2 LINE L2 -1 3312 3295 6950 131 50 35 chrX 101315150 101316363 -75657777 + Tigger3b DNA MER2_type 1 1230 -1 414 233 90 58 chrX 101316363 101316532 -75657608 - L2 LINE L2 -18 3295 3118 277 239 92 18 chrX 101316702 101316811 -75657329 - MER112 DNA MER1_type -1 259 143 690 246 11 16 chrX 101317085 101317268 -75656872 - MIR SINE MIR -6 256 75 421 203 15 64 chrX 101318113 101318287 -75655853 + MIR SINE MIR 34 201 -61 261 397 85 5 chrX 101318416 101318640 -75655500 + L2 LINE L2 2808 3049 -223 363 191 282 18 chrX 101318674 101318784 -75655356 + MER5A DNA MER1_type 45 183 -6 2688 132 32 64 chrX 101319547 101320017 -75654123 + L1PB4 LINE L1 5700 6154 -2 21 0 0 0 chrX 101320017 101320038 -75654102 + AT_rich Low_complexity Low_complexity 1 21 0 193 194 0 0 chrX 101320156 101320192 -75653948 + L2 LINE L2 3233 3268 -4 1865 146 10 14 chrX 101320282 101320577 -75653563 + AluSx SINE Alu 1 294 -18 203 235 0 20 chrX 101320898 101320949 -75653191 + MIR SINE MIR 53 102 -160 182 216 0 0 chrX 101321168 101321205 -75652935 - MIR3 SINE MIR 0 208 172 * 230 326 57 101 chrX 101321173 101321400 -75652740 - L3 LINE CR1 -1 1576 1360 * 1200 261 86 53 chrX 101321396 101321883 -75652257 + L3 LINE CR1 971 1473 -104 315 96 0 0 chrX 101322320 101322372 -75651768 + (TC)n Simple_repeat Simple_repeat 2 53 0 234 0 0 0 chrX 101322372 101322398 -75651742 + (CA)n Simple_repeat Simple_repeat 1 26 0 361 284 0 0 chrX 101322406 101322487 -75651653 - MIR SINE MIR -76 132 52 2317 90 0 7 chrX 101323618 101323919 -75650221 + AluSg SINE Alu 1 299 -11 183 233 0 0 chrX 101324817 101324860 -75649280 + L2 LINE L2 3270 3312 -1 * 273 361 67 24 chrX 101324853 101325061 -75649079 + L3b LINE CR1 1150 1366 -217 767 264 10 15 chrX 101325064 101325261 -75648879 + MIR SINE MIR 2 197 -65 2214 109 0 10 chrX 101325759 101326061 -75648079 + AluSx SINE Alu 1 299 -13 261 342 36 77 chrX 101326204 101326400 -75647740 - L2 LINE L2 -49 3223 3036 274 288 119 42 chrX 101326770 101327006 -75647134 - L2 LINE L2 -420 2894 2641 205 162 0 0 chrX 101327309 101327346 -75646794 + (TATG)n Simple_repeat Simple_repeat 4 40 0 886 56 9 0 chrX 101328113 101328221 -75645919 - L1PA3 LINE L1 -3 6152 6044 1612 46 0 0 chrX 101328221 101328415 -75645725 + L1PA3 LINE L1 5871 6064 -91 795 254 30 5 chrX 101328420 101328621 -75645519 + MIR SINE MIR 29 234 -28 908 295 97 17 chrX 101328673 101329022 -75645118 + L2 LINE L2 2936 3312 -1 268 323 21 0 chrX 101329349 101329442 -75644698 + L2 LINE L2 3218 3312 -1 2235 97 0 27 chrX 101330283 101330583 -75643557 - AluSx SINE Alu -20 292 1 287 321 15 46 chrX 101330798 101330929 -75643211 + L2 LINE L2 2917 3043 -229 271 243 57 0 chrX 101331901 101331971 -75642169 + MIR SINE MIR 173 246 -16 253 319 28 35 chrX 101331987 101332128 -75642012 + MIR SINE MIR 104 243 -19 408 130 0 0 chrX 101332942 101333011 -75641129 + (CA)n Simple_repeat Simple_repeat 2 70 0 28 0 0 0 chrX 101333066 101333094 -75641046 + AT_rich Low_complexity Low_complexity 1 28 0 769 202 56 11 chrX 101333927 101334105 -75640035 - MER5A DNA MER1_type -3 186 1 380 273 0 0 chrX 101334418 101334506 -75639634 + MIR SINE MIR 56 143 -119 791 245 5 31 chrX 101334860 101335056 -75639084 - MIR SINE MIR -70 192 2 363 262 128 20 chrX 101335068 101335217 -75638923 - MIR3 SINE MIR -7 201 37 955 215 0 5 chrX 101335333 101335524 -75638616 + MER63A DNA MER1_type 21 210 0 318 323 25 32 chrX 101335924 101336082 -75638058 - HAL1b LINE L1 -8 1340 1184 188 250 19 19 chrX 101336276 101336328 -75637812 + MIR SINE MIR 24 75 -133 4413 144 43 17 chrX 101337074 101337887 -75636253 + MER6 DNA MER2_type 29 862 -3 575 237 21 53 chrX 101338094 101338284 -75635856 + MIR SINE MIR 75 258 -4 1089 153 0 6 chrX 101338466 101338642 -75635498 - MER5B DNA MER1_type -2 176 2 194 88 0 29 chrX 101339416 101339450 -75634690 + (TTTAG)n Simple_repeat Simple_repeat 1 33 0 375 23 0 0 chrX 101341244 101341288 -75632852 + (CA)n Simple_repeat Simple_repeat 2 45 0 279 0 0 0 chrX 101341288 101341319 -75632821 + (TA)n Simple_repeat Simple_repeat 1 31 0 469 304 9 0 chrX 101341486 101341601 -75632539 + L2 LINE L2 3156 3271 -1 207 250 54 18 chrX 101341680 101341736 -75632404 - L2 LINE L2 -5 3267 3210 2101 139 31 28 chrX 101342777 101343137 -75631003 - THE1B LTR MaLR 0 364 4 287 259 95 43 chrX 101343139 101343255 -75630885 - L2 LINE L2 -214 3058 2937 263 311 11 0 chrX 101343967 101344057 -75630083 + L1ME LINE L1 5559 5649 -521 970 158 5 65 chrX 101344064 101344279 -75629861 - MER3 DNA MER1_type 0 209 8 740 258 64 26 chrX 101346669 101346902 -75627238 - MIR SINE MIR -1 261 20 182 216 54 0 chrX 101347092 101347129 -75627011 - L2 LINE L2 -6 3307 3269 183 156 0 0 chrX 101347758 101347790 -75626350 + (ATTG)n Simple_repeat Simple_repeat 2 33 0 2912 148 34 44 chrX 101347793 101348380 -75625760 - L1MB5 LINE L1 -8 6166 5586 633 263 178 0 chrX 101348397 101348610 -75625530 + MIR SINE MIR 10 260 -2 213 246 0 0 chrX 101348807 101348872 -75625268 + (TA)n Simple_repeat Simple_repeat 2 66 0 575 319 60 21 chrX 101348977 101349212 -75624928 + MIR SINE MIR 2 245 -17 446 250 140 22 chrX 101349584 101349724 -75624416 - MIR SINE MIR -63 145 40 315 233 44 56 chrX 101349787 101349877 -75624263 - MIR SINE MIR -74 134 46 680 165 0 8 chrX 101350173 101350306 -75623834 + MLT2D LTR ERVL 1 132 -282 4582 176 25 1 chrX 101350309 101351238 -75622902 - L1PB4 LINE L1 -1409 4737 3787 5073 155 30 12 chrX 101351239 101352599 -75621541 + L1PB4 LINE L1 4767 6152 -4 1545 141 0 4 chrX 101352599 101352847 -75621293 + MLT2D LTR ERVL 112 358 -56 1690 176 24 0 chrX 101352849 101353179 -75620961 + MER7A DNA MER2_type 2 337 -9 249 143 0 24 chrX 101353250 101353292 -75620848 - L2 LINE L2 -29 3243 3203 606 261 39 88 chrX 101354358 101354618 -75619522 + L2 LINE L2 2247 2493 -821 1155 198 96 56 chrX 101354692 101355084 -75619056 - L1MC5 LINE L1 -51 7910 7486 4128 129 24 18 chrX 101355084 101355822 -75618318 - L1MA6 LINE L1 0 6300 5558 1155 198 96 56 chrX 101355822 101356001 -75618139 - L1MC5 LINE L1 -475 7486 7316 320 222 0 20 chrX 101356005 101356104 -75618036 + CT-rich Low_complexity Low_complexity 4 100 0 743 220 24 107 chrX 101356185 101356607 -75617533 - L1MC5 LINE L1 -722 7239 6853 629 206 13 13 chrX 101356613 101356768 -75617372 - L1MA10 LINE L1 0 6334 6180 375 241 62 103 chrX 101356768 101356992 -75617148 - L1ME1 LINE L1 -167 5999 5824 2038 128 17 62 chrX 101357056 101357409 -75616731 - MER1B DNA MER1_type 0 337 1 5140 223 115 13 chrX 101357409 101359074 -75615066 - L1ME1 LINE L1 -902 5244 3411 599 140 6 110 chrX 101359773 101359937 -75614203 - MER53 DNA DNA -35 154 8 233 192 0 0 chrX 101360731 101360783 -75613357 + L1MB8 LINE L1 6127 6178 0 283 297 18 25 chrX 101361088 101361260 -75612880 + L2 LINE L2 3139 3313 0 759 156 5 91 chrX 101361495 101361694 -75612446 - MER53 DNA DNA 0 189 8 366 134 0 0 chrX 101362230 101362297 -75611843 + (TG)n Simple_repeat Simple_repeat 2 68 0 575 305 76 9 chrX 101362422 101362632 -75611508 + MIR SINE MIR 20 243 -19 187 120 20 20 chrX 101363080 101363130 -75611010 + A-rich Low_complexity Low_complexity 2 51 0 304 273 82 27 chrX 101363149 101363259 -75610881 + MIR3 SINE MIR 47 162 -46 337 237 148 22 chrX 101363309 101363444 -75610696 - MIR SINE MIR 0 262 111 3847 269 65 23 chrX 101363818 101365085 -75609055 + L2 LINE L2 870 2196 -1118 1688 129 75 25 chrX 101365085 101365365 -75608775 - AluJo SINE Alu -18 294 1 3847 269 65 23 chrX 101365365 101365411 -75608729 + L2 LINE L2 2196 2239 -1075 6517 27 0 0 chrX 101365634 101366438 -75607702 - L1P LINE L1 -1561 4585 3782 4053 30 0 0 chrX 101366438 101366942 -75607198 + L1P LINE L1 4566 5069 -1077 236 284 62 0 chrX 101366952 101367033 -75607107 + MLT1I LTR MaLR 320 405 -4 2305 264 61 18 chrX 101367033 101367741 -75606399 + L2 LINE L2 2256 3027 -286 858 193 50 6 chrX 101367741 101367922 -75606218 - MER5A DNA MER1_type 0 189 1 2305 264 61 18 chrX 101367922 101368219 -75605921 + L2 LINE L2 3027 3310 -3 183 358 36 36 chrX 101368718 101368855 -75605285 - L2 LINE L2 -221 3051 2915 1831 115 4 0 chrX 101368951 101369203 -75604937 + AluSx SINE Alu 38 290 -22 341 270 113 0 chrX 101369217 101369376 -75604764 - MER20B DNA MER1_type -369 414 238 845 294 55 13 chrX 101369551 101369789 -75604351 - MIR SINE MIR 0 262 15 231 291 127 0 chrX 101370112 101370191 -75603949 + MIR3 SINE MIR 71 159 -49 1481 240 88 66 chrX 101370215 101370816 -75603324 + MER20B DNA MER1_type 30 651 -132 1125 8 0 0 chrX 101370816 101370944 -75603196 + L1PA4 LINE L1 6020 6147 -8 1481 240 88 66 chrX 101370944 101371080 -75603060 + MER20B DNA MER1_type 651 783 0 224 299 15 15 chrX 101372492 101372559 -75601581 + MIR SINE MIR 1 67 -195 911 271 209 25 chrX 101372560 101372991 -75601149 - L2 LINE L2 0 3313 2804 210 260 23 0 chrX 101374092 101374153 -75599987 - MIR SINE MIR -101 107 42 832 188 0 0 chrX 101374461 101374599 -75599541 + MER46A DNA MER2_type 1 138 -98 441 0 0 0 chrX 101374603 101374652 -75599488 + (TG)n Simple_repeat Simple_repeat 2 50 0 352 363 45 20 chrX 101374958 101375159 -75598981 - MIR3 SINE MIR 0 208 3 425 245 38 92 chrX 101375482 101375796 -75598344 - L1ME LINE L1 -340 5781 5485 227 303 40 86 chrX 101375941 101376139 -75598001 + L3b LINE CR1 1298 1486 -97 210 148 259 0 chrX 101377102 101377156 -75596984 - MIR SINE MIR -71 137 70 1389 320 114 27 chrX 101378205 101379099 -75595041 + L2 LINE L2 1894 2865 -449 225 379 10 61 chrX 101379144 101379342 -75594798 + L2 LINE L2 2880 3067 -205 411 309 51 22 chrX 101380292 101380470 -75593670 + MIR3 SINE MIR 12 194 -14 230 278 56 16 chrX 101381429 101381555 -75592585 + Charlie7 DNA MER1_type 2 132 -2480 2233 191 76 35 chrX 101381626 101382193 -75591947 + Charlie7 DNA MER1_type 130 719 -1893 601 156 18 147 chrX 101382188 101382413 -75591727 + Charlie7 DNA MER1_type 2417 2612 0 * 245 259 97 50 chrX 101382721 101382858 -75591282 - MIR SINE MIR -61 147 10 270 0 0 0 chrX 101383699 101383729 -75590411 + (CA)n Simple_repeat Simple_repeat 2 31 0 297 0 0 0 chrX 101384054 101384087 -75590053 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chrX 101384161 101384182 -75589958 + AT_rich Low_complexity Low_complexity 1 21 0 365 190 90 40 chrX 101386312 101386412 -75587728 - MIR3 SINE MIR -6 202 98 212 0 36 0 chrX 101386463 101386491 -75587649 + (TG)n Simple_repeat Simple_repeat 2 30 0 237 159 0 0 chrX 101386558 101386602 -75587538 + G-rich Low_complexity Low_complexity 5 48 0 806 259 15 76 chrX 101386778 101386880 -75587260 + MIR SINE MIR 3 110 -152 1391 106 58 0 chrX 101386880 101387087 -75587053 + MER20 DNA MER1_type 1 219 0 806 259 15 76 chrX 101387087 101387247 -75586893 + MIR SINE MIR 110 249 -13 1366 257 52 0 chrX 101387267 101387629 -75586511 + L2 LINE L2 1707 2087 -1227 203 242 210 0 chrX 101387689 101387751 -75586389 + MIR SINE MIR 172 246 -16 729 130 8 2 chrX 101389517 101389652 -75584488 - L1MB7 LINE L1 -3 6175 6042 443 302 33 21 chrX 101389656 101389834 -75584306 - MIR SINE MIR -48 160 17 186 43 0 0 chrX 101390016 101390039 -75584101 + (CA)n Simple_repeat Simple_repeat 1 23 0 735 278 57 24 chrX 101390183 101390431 -75583709 + MIR SINE MIR 7 262 0 589 303 153 22 chrX 101391074 101391302 -75582838 - MIR SINE MIR 0 262 5 243 61 0 0 chrX 101391435 101391468 -75582672 + (T)n Simple_repeat Simple_repeat 1 33 0 842 181 0 13 chrX 101391475 101391630 -75582510 - FRAM SINE Alu -2 174 22 1155 268 45 25 chrX 101392751 101393199 -75580941 + L1ME4a LINE L1 5576 6032 -89 605 223 0 0 chrX 101393376 101393488 -75580652 + MER81 DNA DNA 1 112 -2 326 251 67 78 chrX 101393489 101393668 -75580472 - MIR3 SINE MIR -7 201 25 217 371 0 23 chrX 101393825 101393957 -75580183 + MIR SINE MIR 128 256 -6 448 254 0 27 chrX 101394019 101394129 -75580011 - MIR SINE MIR -93 169 63 511 242 119 41 chrX 101394419 101394613 -75579527 + MER63A DNA MER1_type 2 210 0 240 35 0 0 chrX 101394891 101394920 -75579220 + (CAAAAA)n Simple_repeat Simple_repeat 3 31 0 2246 219 89 24 chrX 101394950 101395167 -75578973 - L1MC4 LINE L1 0 8042 7841 396 0 0 0 chrX 101395167 101395211 -75578929 + (CA)n Simple_repeat Simple_repeat 2 45 0 2246 219 89 24 chrX 101395211 101395670 -75578470 - L1MC4 LINE L1 -201 7841 7322 320 316 43 26 chrX 101395899 101396016 -75578124 + L2 LINE L2 3150 3268 -4 497 185 0 2 chrX 101396282 101396382 -75577758 - MLT1J LTR MaLR 0 615 412 3982 223 52 5 chrX 101396385 101397357 -75576783 + L1MEc LINE L1 44 1061 -5335 1620 225 32 29 chrX 101397357 101397583 -75576557 - MLT1J LTR MaLR -88 423 194 1824 181 3 0 chrX 101397583 101397876 -75576264 + AluJo SINE Alu 1 294 -18 1620 225 32 29 chrX 101397876 101398058 -75576082 - MLT1J LTR MaLR -317 194 14 368 302 0 22 chrX 101398082 101398261 -75575879 + L1MC5 LINE L1 7357 7531 -430 351 249 50 65 chrX 101398341 101398542 -75575598 + L1ME3A LINE L1 5965 6162 -8 2339 73 3 0 chrX 101398596 101398922 -75575218 + AluSp SINE Alu 1 327 0 243 289 0 0 chrX 101401129 101401205 -75572935 - L1ME4a LINE L1 -72 6049 5974 353 262 28 21 chrX 101401252 101401397 -75572743 + (TA)n Simple_repeat Simple_repeat 2 147 0 505 243 21 0 chrX 101401421 101401565 -75572575 + L1ME4a LINE L1 5756 5902 -219 3922 256 60 31 chrX 101401571 101403313 -75570827 + L1MB7 LINE L1 3507 5298 -848 453 286 79 52 chrX 101403330 101403697 -75570443 + L1MCc LINE L1 33 409 -6014 * 2945 199 14 0 chrX 101403696 101404289 -75569851 + L1MB7 LINE L1 5538 6138 -46 2007 234 84 16 chrX 101404331 101405073 -75569067 + L1M4 LINE L1 2315 3106 -3040 3342 133 37 13 chrX 101405073 101405608 -75568532 - ERVL LTR ERVL -1295 4469 3922 1776 236 61 35 chrX 101405608 101406261 -75567879 - L1M4 LINE L1 -780 5864 5195 26 30 0 0 chrX 101407074 101407107 -75567033 + AT_rich Low_complexity Low_complexity 1 33 0 3669 224 63 45 chrX 101408611 101409734 -75564406 - L1M4 LINE L1 -5394 1148 5 3523 89 0 4 chrX 101410039 101410522 -75563618 + L1PA14 LINE L1 5667 6147 -14 22 35 0 0 chrX 101410523 101410552 -75563588 + AT_rich Low_complexity Low_complexity 1 29 0 370 54 0 0 chrX 101410559 101410615 -75563525 + Tigger3(Golem) DNA MER2_type 198 253 -2776 514 169 132 7 chrX 101410616 101410752 -75563388 + L1MD1 LINE L1 5885 6037 -205 689 274 11 21 chrX 101410753 101410939 -75563201 + L1MD2 LINE L1 5478 5661 -2147 1366 207 41 3 chrX 101410948 101411243 -75562897 + L1MD2 LINE L1 6053 6358 -1 231 294 147 29 chrX 101411691 101411861 -75562279 - L2 LINE L2 0 3313 3124 1496 255 94 9 chrX 101412479 101412938 -75561202 + L1MC4a LINE L1 5367 5864 -1944 2127 75 3 60 chrX 101413594 101413762 -75560378 + L1PB1 LINE L1 5365 5506 -645 2329 104 7 0 chrX 101413762 101414071 -75560069 - AluSp SINE Alu -2 311 1 2127 75 3 60 chrX 101414071 101414236 -75559904 + L1PB1 LINE L1 5506 5679 -472 193 51 51 26 chrX 101414236 101414275 -75559865 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 3557 65 0 19 chrX 101414282 101414759 -75559381 + L1PB1 LINE L1 5684 6151 0 13426 163 32 11 chrX 101414780 101417085 -75557055 + L1M1 LINE L1 16 2370 -5195 2491 125 15 5 chrX 101417058 101417555 -75556585 + L1MA2 LINE L1 6571 7069 -655 * 2869 84 70 7 chrX 101417557 101417928 -75556212 + MLT2A1 LTR ERVL 3 404 -40 399 41 0 0 chrX 101417928 101417977 -75556163 + (CA)n Simple_repeat Simple_repeat 2 50 0 2869 84 70 7 chrX 101417977 101418021 -75556119 + MLT2A1 LTR ERVL 404 444 0 44358 67 10 2 chrX 101418021 101423339 -75550801 + HERVL-A1 LTR ERVL 1 5364 -290 2380 90 0 7 chrX 101423339 101423649 -75550491 - AluSx SINE Alu -4 308 1 44358 67 10 2 chrX 101423649 101423943 -75550197 + HERVL-A1 LTR ERVL 5364 5654 0 1804 85 31 11 chrX 101423943 101424203 -75549937 + MLT2A1 LTR ERVL 1 265 -179 266 111 0 22 chrX 101424196 101424241 -75549899 + MLT2A1 LTR ERVL 410 453 0 * 4313 82 18 20 chrX 101424241 101424903 -75549237 + L1MA2 LINE L1 5644 6304 0 31 0 0 0 chrX 101424911 101424942 -75549198 + AT_rich Low_complexity Low_complexity 1 31 0 338 227 73 18 chrX 101424997 101425107 -75549033 + L1ME1 LINE L1 3912 4027 -2119 435 182 0 100 chrX 101425110 101425220 -75548920 - MER20 DNA MER1_type 0 219 121 408 255 57 14 chrX 101425312 101425453 -75548687 - MER46C DNA MER2_type -131 207 61 541 172 52 26 chrX 101425492 101425608 -75548532 - MER20 DNA MER1_type -100 119 1 778 261 4 66 chrX 101425608 101425866 -75548274 + L1ME1 LINE L1 4023 4265 -1881 210 37 0 0 chrX 101425866 101425893 -75548247 + (CTA)n Simple_repeat Simple_repeat 3 29 0 778 261 4 66 chrX 101425893 101425906 -75548234 + L1ME1 LINE L1 4265 4277 -1869 3321 179 23 0 chrX 101425910 101426608 -75547532 + L1M2 LINE L1 4449 5188 -958 6239 124 24 64 chrX 101426608 101427249 -75546891 - Tigger3b DNA MER2_type -1797 1231 566 2228 104 0 10 chrX 101427249 101427546 -75546594 + AluSx SINE Alu 1 294 -18 330 26 0 0 chrX 101427546 101427585 -75546555 + (TA)n Simple_repeat Simple_repeat 1 39 0 6239 124 24 64 chrX 101427585 101428083 -75546057 - Tigger3b DNA MER2_type -2460 568 137 2060 156 23 0 chrX 101428091 101428437 -75545703 + L1M2 LINE L1 5329 5682 -630 6600 241 38 41 chrX 101428445 101429407 -75544733 + L1MB5 LINE L1 2233 3196 -2950 5975 213 71 19 chrX 101429407 101431496 -75542644 + L1PA16 LINE L1 4016 6158 -8 6600 241 38 41 chrX 101431496 101431736 -75542404 + L1MB5 LINE L1 3196 3435 -2711 1633 138 113 22 chrX 101431736 101432011 -75542129 + AluJo SINE Alu 1 300 -12 6600 241 38 41 chrX 101432011 101432898 -75541242 + L1MB5 LINE L1 3435 4323 -1823 2408 124 0 8 chrX 101432898 101433262 -75540878 + MER46B DNA MER2_type 1 236 0 6600 241 38 41 chrX 101433262 101434321 -75539819 + L1MB5 LINE L1 4323 5326 -820 1197 166 99 32 chrX 101434322 101434575 -75539565 + AluJo SINE Alu 23 292 -20 3075 181 31 35 chrX 101434580 101435264 -75538876 + L1MB5 LINE L1 5322 6002 -172 536 188 36 0 chrX 101435267 101435379 -75538761 + L1MB5 LINE L1 6051 6166 -8 881 231 139 41 chrX 101435388 101436080 -75538060 + L1ME1 LINE L1 4943 5704 -743 668 246 108 5 chrX 101436076 101436271 -75537869 + L1ME1 LINE L1 5947 6161 -5 * 23 33 0 0 chrX 101436843 101436873 -75537267 + AT_rich Low_complexity Low_complexity 1 30 0 193 222 0 0 chrX 101437066 101437102 -75537038 - L2 LINE L2 -15 3298 3263 * 200 233 93 0 chrX 101437070 101437113 -75537027 - MIR SINE MIR -13 249 203 180 265 60 72 chrX 101437130 101437213 -75536927 - MIR SINE MIR -179 83 2 1715 174 34 0 chrX 101438482 101438780 -75535360 + AluJb SINE Alu 5 312 0 24 67 0 0 chrX 101438834 101438879 -75535261 + AT_rich Low_complexity Low_complexity 1 45 0 2047 106 24 3 chrX 101439286 101439579 -75534561 + AluSq SINE Alu 1 299 -14 2098 108 0 56 chrX 101440373 101440696 -75533444 + AluSq SINE Alu 1 305 -8 30 0 0 0 chrX 101441196 101441226 -75532914 + AT_rich Low_complexity Low_complexity 1 30 0 347 188 83 10 chrX 101441598 101441694 -75532446 + L1ME1 LINE L1 5636 5738 -383 282 274 26 18 chrX 101441702 101441815 -75532325 + L1ME1 LINE L1 57 170 -6226 * 3300 221 85 32 chrX 101441813 101442188 -75531952 + L1ME1 LINE L1 4166 4520 -1695 2500 41 7 0 chrX 101442188 101442482 -75531658 - AluY SINE Alu -15 296 1 3300 221 85 32 chrX 101442482 101443275 -75530865 + L1ME1 LINE L1 4520 5396 -819 1371 239 18 3 chrX 101443261 101443592 -75530548 + L1ME1 LINE L1 5811 6146 -20 * 226 268 0 0 chrX 101443609 101443691 -75530449 + L1ME1 LINE L1 5497 5578 -850 264 143 48 32 chrX 101443774 101443837 -75530303 - L1ME1 LINE L1 -3 6163 6100 * 960 218 20 0 chrX 101443831 101444028 -75530112 + L1ME1 LINE L1 5573 5773 -462 1237 172 155 69 chrX 101444029 101444377 -75529763 + MER76 LTR ERV 311 688 0 852 264 80 13 chrX 101444377 101444752 -75529388 + L1ME1 LINE L1 3890 4289 -1857 456 181 52 17 chrX 101444755 101444871 -75529269 + L1ME1 LINE L1 6115 6234 -1 1467 270 89 13 chrX 101444891 101445499 -75528641 + L1ME1 LINE L1 4297 4950 -1196 475 153 11 176 chrX 101445604 101445780 -75528360 + L1ME2 LINE L1 6011 6157 -7 1738 205 72 18 chrX 101445801 101446244 -75527896 + L1ME1 LINE L1 5691 6157 -9 758 142 25 0 chrX 101446268 101446388 -75527752 + FLAM_C SINE Alu 1 123 -10 187 295 27 43 chrX 101446446 101446604 -75527536 - L3 LINE CR1 -9 1568 1371 2254 101 10 0 chrX 101446604 101446911 -75527229 + AluSq SINE Alu 1 310 -3 250 358 33 25 chrX 101447049 101447169 -75526971 - L2 LINE L2 -3 3310 3190 4459 184 87 101 chrX 101447520 101447980 -75526160 - Charlie1a DNA MER1_type -1306 1455 990 13201 31 7 0 chrX 101447980 101450328 -75523812 + L1PA3 LINE L1 3778 6152 -3 4459 184 87 101 chrX 101450328 101450787 -75523353 - Charlie1a DNA MER1_type -1771 990 526 820 159 0 0 chrX 101450787 101450919 -75523221 + FLAM_C SINE Alu 1 132 -11 4459 184 87 101 chrX 101450919 101451257 -75522883 - Charlie1a DNA MER1_type -2235 526 86 1839 162 19 48 chrX 101451257 101451633 -75522507 + MLT1A1 LTR MaLR 1 365 0 4459 184 87 101 chrX 101451633 101451718 -75522422 - Charlie1a DNA MER1_type -2675 86 1 1039 293 43 34 chrX 101452064 101452501 -75521639 + MLT1L LTR MaLR 175 615 0 24 32 0 0 chrX 101452945 101452976 -75521164 + AT_rich Low_complexity Low_complexity 1 31 0 451 132 15 0 chrX 101453534 101453602 -75520538 + L1ME LINE L1 5515 5583 -538 459 292 31 0 chrX 101454475 101454605 -75519535 + MIR SINE MIR 39 172 -90 358 261 123 53 chrX 101454680 101454998 -75519142 + L1ME4a LINE L1 5584 5923 -198 25 31 0 0 chrX 101455215 101455247 -75518893 + AT_rich Low_complexity Low_complexity 1 32 0 256 286 71 0 chrX 101455640 101455710 -75518430 + L2 LINE L2 3189 3263 -50 185 225 0 0 chrX 101455774 101455814 -75518326 + L2 LINE L2 3271 3310 -3 425 286 133 30 chrX 101456064 101456298 -75517842 - MIR SINE MIR 0 262 5 3429 184 43 34 chrX 101456372 101456662 -75517478 + L1MC4 LINE L1 6567 6853 -1142 2501 62 0 10 chrX 101456662 101456968 -75517172 + AluY SINE Alu 1 303 -8 3429 184 43 34 chrX 101456968 101457478 -75516662 + L1MC4 LINE L1 6853 7470 -525 932 266 16 35 chrX 101458152 101458408 -75515732 + MIR SINE MIR 2 252 -10 29 28 0 0 chrX 101464248 101464284 -75509856 + AT_rich Low_complexity Low_complexity 1 36 0 241 155 35 0 chrX 101466357 101466415 -75507725 + (TA)n Simple_repeat Simple_repeat 2 61 0 925 168 56 23 chrX 101466566 101466711 -75507429 + Charlie4 DNA MER1_type 1740 1896 -65 971 176 11 17 chrX 101466711 101466887 -75507253 + FAM SINE Alu 1 175 0 925 168 56 23 chrX 101466887 101466955 -75507185 + Charlie4 DNA MER1_type 1896 1960 -1 459 183 151 0 chrX 101467241 101467334 -75506806 - FAM SINE Alu -75 110 4 2058 136 10 3 chrX 101467357 101467667 -75506473 + AluJo SINE Alu 1 312 0 225 399 32 0 chrX 101468107 101468265 -75505875 + L2 LINE L2 1812 1974 -1340 2458 84 0 0 chrX 101468316 101468627 -75505513 - AluSx SINE Alu -1 311 1 7992 132 15 4 chrX 101468671 101469899 -75504241 - Ricksha_b DNA DNA -11 1243 3 525 302 0 0 chrX 101469947 101470063 -75504077 - L2 LINE L2 -4 3268 3153 338 319 48 112 chrX 101470104 101471094 -75503046 + L2 LINE L2 2169 3091 -181 425 297 0 31 chrX 101471357 101471485 -75502655 + MIR SINE MIR 6 129 -133 1712 223 80 99 chrX 101471501 101472276 -75501864 - L1MD2 LINE L1 -5 6354 5595 669 213 5 38 chrX 101472265 101472476 -75501664 - L1MEc LINE L1 -5236 1160 957 * 985 115 0 13 chrX 101472485 101472641 -75501499 - L1PA13 LINE L1 -1 6162 6009 1568 108 31 0 chrX 101472890 101473113 -75501027 - MER30 DNA MER1_type 0 230 1 307 267 242 8 chrX 101473211 101473331 -75500809 - MIR SINE MIR -50 212 65 201 315 39 96 chrX 101473338 101473516 -75500624 + L2 LINE L2 2560 2727 -587 304 154 0 0 chrX 101473811 101473863 -75500277 - L2 LINE L2 -1 3312 3261 363 23 0 0 chrX 101475415 101475459 -75498681 + (TG)n Simple_repeat Simple_repeat 2 45 0 2066 83 0 4 chrX 101475463 101475729 -75498411 - AluY SINE Alu -46 265 1 325 81 32 0 chrX 101475915 101475977 -75498163 + (TC)n Simple_repeat Simple_repeat 2 65 0 339 25 0 0 chrX 101475977 101476017 -75498123 + (CA)n Simple_repeat Simple_repeat 1 40 0 198 0 0 0 chrX 101476131 101476153 -75497987 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1753 145 21 3 chrX 101476163 101476446 -75497694 - AluJb SINE Alu -24 288 1 645 361 5 0 chrX 101476911 101477105 -75497035 - MER91A DNA MER1_type 0 196 2 541 301 48 44 chrX 101477612 101477841 -75496299 + MIR SINE MIR 33 262 0 259 143 0 0 chrX 101478741 101478790 -75495350 - L1MC4 LINE L1 -5 8037 7989 1753 165 44 10 chrX 101478790 101479087 -75495053 - AluJo SINE Alu -5 307 1 399 257 15 29 chrX 101479089 101479225 -75494915 - L1MC4 LINE L1 -140 7902 7769 234 356 81 19 chrX 101479566 101479827 -75494313 + L2 LINE L2 1784 2060 -1254 * 280 227 234 31 chrX 101479798 101479926 -75494214 + MIR SINE MIR 109 262 0 1281 251 61 21 chrX 101480705 101481084 -75493056 - MLT1I LTR MaLR -8 401 8 330 351 0 27 chrX 101481481 101481592 -75492548 - MIR3 SINE MIR -92 116 9 247 175 0 0 chrX 101482727 101482767 -75491373 - L1MC5 LINE L1 -102 7859 7820 207 69 0 0 chrX 101483756 101483785 -75490355 + (CTA)n Simple_repeat Simple_repeat 1 29 0 216 295 13 13 chrX 101483817 101483895 -75490245 - MIR SINE MIR -27 235 158 542 268 46 26 chrX 101484892 101485045 -75489095 - MIR SINE MIR -90 172 17 293 313 34 50 chrX 101485577 101485782 -75488358 - MIR SINE MIR -56 206 11 199 314 35 23 chrX 101485872 101485958 -75488182 - L2 LINE L2 -179 3093 3007 1786 172 0 38 chrX 101486363 101486683 -75487457 - AluJo SINE Alu -4 308 1 1704 82 0 0 chrX 101487513 101487733 -75486407 + AluY SINE Alu 91 310 -1 280 215 140 65 chrX 101489604 101489711 -75484429 + MIR SINE MIR 59 173 -89 596 278 24 28 chrX 101491547 101491759 -75482381 + MIR SINE MIR 10 220 -42 2307 103 3 0 chrX 101492199 101492501 -75481639 - AluSp SINE Alu -10 303 1 489 47 0 0 chrX 101492791 101492855 -75481285 + (TTTC)n Simple_repeat Simple_repeat 2 65 0 1462 197 0 41 chrX 101492857 101493152 -75480988 - AluJb SINE Alu -29 283 1 455 211 37 112 chrX 101493152 101493313 -75480827 + MIR SINE MIR 101 249 -13 249 309 175 0 chrX 101493588 101493685 -75480455 + L2 LINE L2 3151 3264 -8 231 146 0 0 chrX 101494202 101494243 -75479897 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 204 271 17 0 chrX 101494272 101494331 -75479809 - L2 LINE L2 -92 3221 3162 244 0 0 0 chrX 101494529 101494562 -75479578 + L1MA3 LINE L1 6273 6305 0 443 302 160 52 chrX 101494577 101494910 -75479230 - L2 LINE L2 -386 2928 2633 1631 190 0 10 chrX 101494910 101495205 -75478935 + AluJo SINE Alu 1 292 -20 443 302 160 52 chrX 101495205 101495607 -75478533 - L2 LINE L2 -681 2633 2113 2050 104 47 3 chrX 101495696 101495995 -75478145 + AluSx SINE Alu 1 312 0 186 71 0 0 chrX 101496131 101496159 -75477981 + (TG)n Simple_repeat Simple_repeat 2 29 0 701 194 16 0 chrX 101496969 101497093 -75477047 - MSTD LTR MaLR 0 396 271 227 364 62 19 chrX 101497232 101497441 -75476699 + L1MEd LINE L1 563 780 -5339 473 299 46 30 chrX 101497551 101497890 -75476250 + L1MEd LINE L1 926 1249 -4870 441 0 0 0 chrX 101497898 101497947 -75476193 + (GA)n Simple_repeat Simple_repeat 1 49 0 658 308 56 16 chrX 101498084 101498458 -75475682 + L1MEd LINE L1 2470 2858 -3271 898 270 92 2 chrX 101498463 101498933 -75475207 + L1MEd LINE L1 2888 3399 -2730 854 302 11 8 chrX 101498964 101499325 -75474815 + L1MEd LINE L1 3530 3891 -2238 736 255 120 30 chrX 101499507 101499981 -75474159 - L1ME4a LINE L1 -8 6113 5597 297 151 0 0 chrX 101500457 101500510 -75473630 + (CA)n Simple_repeat Simple_repeat 2 54 0 198 318 0 30 chrX 101501867 101501933 -75472207 + L2 LINE L2 3209 3272 0 651 179 236 14 chrX 101502537 101502749 -75471391 - L1ME3A LINE L1 0 6170 5912 266 320 49 16 chrX 101504254 101504376 -75469764 - L2 LINE L2 -175 3097 2972 207 154 26 64 chrX 101505049 101505127 -75469013 + (TTTA)n Simple_repeat Simple_repeat 2 76 0 28 79 0 0 chrX 101506175 101506238 -75467902 + AT_rich Low_complexity Low_complexity 1 63 0 253 91 0 68 chrX 101506264 101506308 -75467832 - L1ME3 LINE L1 -95 6067 6027 438 181 11 11 chrX 101506313 101506407 -75467733 - L1ME3 LINE L1 -189 5973 5880 454 349 33 7 chrX 101506475 101506627 -75467513 - L2 LINE L2 0 3272 3117 286 68 0 23 chrX 101506687 101506731 -75467409 + MADE1 DNA Mariner 1 43 -37 5460 50 6 0 chrX 101506743 101507417 -75466723 - L1PA7 LINE L1 0 6154 5477 306 109 0 0 chrX 101507430 101507476 -75466664 + MADE1 DNA Mariner 35 80 0 4524 182 16 25 chrX 101507512 101508217 -75465923 - L1MB8 LINE L1 -5 6242 5545 1961 208 6 3 chrX 101508217 101508578 -75465562 - MLT1A1 LTR MaLR 0 365 4 4524 182 16 25 chrX 101508578 101509202 -75464938 - L1MB8 LINE L1 -702 5545 4917 33415 107 14 30 chrX 101509205 101515462 -75458678 + L1PA7 LINE L1 1 6154 0 2092 195 33 11 chrX 101515470 101515992 -75458148 - L1MB8 LINE L1 -1287 4928 4396 583 159 8 63 chrX 101516066 101516192 -75457948 + Tigger7 DNA MER2_type 2369 2487 0 394 298 44 63 chrX 101516276 101516481 -75457659 + MIR3 SINE MIR 1 201 -7 427 329 6 6 chrX 101516860 101517027 -75457113 + (TGGA)n Simple_repeat Simple_repeat 3 169 0 198 301 0 0 chrX 101517042 101517125 -75457015 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 732 199 0 6 chrX 101517783 101517944 -75456196 - L1MB8 LINE L1 -3648 2567 2408 413 178 75 117 chrX 101517957 101518177 -75455963 - L1MB8 LINE L1 -3884 2331 2103 369 0 0 0 chrX 101518177 101518218 -75455922 + (TTA)n Simple_repeat Simple_repeat 2 42 0 413 178 75 117 chrX 101518218 101518233 -75455907 - L1MB8 LINE L1 -4112 2103 2089 2141 102 0 3 chrX 101518233 101518516 -75455624 - AluSx SINE Alu -30 282 1 413 178 75 117 chrX 101518516 101518644 -75455496 - L1MB8 LINE L1 -4126 2089 2022 645 192 198 28 chrX 101518776 101518953 -75455187 - MIR SINE MIR -12 250 44 263 389 82 19 chrX 101518990 101519309 -75454831 - L2 LINE L2 -557 2757 2419 953 217 25 20 chrX 101519461 101519659 -75454481 - MIR SINE MIR -1 261 63 671 262 29 68 chrX 101519686 101519965 -75454175 + MER102b DNA MER1_type 53 320 -21 200 216 39 0 chrX 101520085 101520136 -75454004 + L3 LINE CR1 1087 1139 -438 1313 112 0 0 chrX 101520139 101520309 -75453831 + AluSg/x SINE Alu 112 281 -31 2097 102 57 0 chrX 101520444 101520727 -75453413 - AluSx SINE Alu -13 299 1 588 245 56 33 chrX 101521352 101521654 -75452486 + L1MC5 LINE L1 7609 7917 -44 15704 118 18 2 chrX 101522103 101524484 -75449656 + Tigger1 DNA MER2_type 1 2418 0 180 0 0 0 chrX 101524534 101524554 -75449586 + (T)n Simple_repeat Simple_repeat 1 20 0 335 330 35 9 chrX 101525483 101525598 -75448542 - L2 LINE L2 0 3313 3196 2063 113 10 13 chrX 101525982 101526283 -75447857 + AluSx SINE Alu 1 300 -12 2720 195 24 16 chrX 101526653 101527120 -75447020 + MLT2B2 LTR ERVL 1 474 -41 479 59 0 15 chrX 101527120 101527188 -75446952 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2720 195 24 16 chrX 101527188 101527223 -75446917 + MLT2B2 LTR ERVL 474 507 -8 1444 262 68 44 chrX 101527408 101527948 -75446192 + L1ME3A LINE L1 5083 5609 -561 1011 193 45 40 chrX 101527948 101528171 -75445969 - MER58A DNA MER1_type 0 224 1 1444 262 68 44 chrX 101528171 101528213 -75445927 + L1ME3A LINE L1 5609 5649 -521 216 67 0 0 chrX 101528213 101528243 -75445897 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 1444 262 68 44 chrX 101528243 101528333 -75445807 + L1ME3A LINE L1 5649 5735 -435 219 114 0 0 chrX 101528333 101528368 -75445772 + (CA)n Simple_repeat Simple_repeat 2 36 0 1444 262 68 44 chrX 101528368 101528720 -75445420 + L1ME3A LINE L1 5735 6132 -38 503 195 110 17 chrX 101529270 101529388 -75444752 - L2 LINE L2 0 3313 3185 230 0 0 32 chrX 101529589 101529620 -75444520 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2384 61 0 0 chrX 101529622 101529901 -75444239 - AluSq SINE Alu -32 281 3 240 265 0 0 chrX 101530446 101530495 -75443645 + polypurine Low_complexity Low_complexity 2 50 0 249 57 0 0 chrX 101530817 101530852 -75443288 + (CA)n Simple_repeat Simple_repeat 2 36 0 912 207 39 0 chrX 101531308 101531487 -75442653 + MER5A DNA MER1_type 1 186 -3 336 222 37 12 chrX 101532448 101532529 -75441611 - L2 LINE L2 -13 3300 3218 2275 294 121 29 chrX 101532547 101532657 -75441483 - L2 LINE L2 -35 3278 3179 1768 151 0 14 chrX 101532657 101532941 -75441199 + AluJo SINE Alu 9 288 -24 2275 294 121 29 chrX 101532941 101533939 -75440201 - L2 LINE L2 -134 3179 2097 1390 270 30 5 chrX 101533979 101534416 -75439724 + L1ME3 LINE L1 4732 5179 -967 1596 243 104 12 chrX 101534504 101535025 -75439115 + L1ME3 LINE L1 5505 6082 -80 186 43 0 0 chrX 101535025 101535048 -75439092 + (CA)n Simple_repeat Simple_repeat 2 24 0 2110 251 278 27 chrX 101535058 101536099 -75438041 - L2 LINE L2 -1252 2062 761 419 293 132 23 chrX 101537071 101537685 -75436455 - L1M4 LINE L1 -1293 4853 4173 * 1612 152 32 23 chrX 101537670 101538152 -75435988 - L1P4 LINE L1 -660 5506 5017 364 309 73 26 chrX 101538165 101538437 -75435703 - L1MEd LINE L1 -3933 2463 2179 457 297 44 33 chrX 101539001 101539379 -75434761 - L1MEd LINE L1 -1015 1561 1093 188 262 24 0 chrX 101539572 101539614 -75434526 - L2 LINE L2 -19 3294 3252 5271 125 22 11 chrX 101539977 101540834 -75433306 + L1MA4 LINE L1 5434 6300 0 28 29 0 0 chrX 101542073 101542108 -75432032 + AT_rich Low_complexity Low_complexity 1 35 0 246 281 124 33 chrX 101543514 101543635 -75430505 + MIR3 SINE MIR 77 208 0 198 0 0 0 chrX 101543716 101543738 -75430402 + (T)n Simple_repeat Simple_repeat 1 22 0 925 176 52 73 chrX 101544948 101545181 -75428959 + L1M4 LINE L1 1 228 -6314 235 163 23 0 chrX 101545182 101545225 -75428915 + L1M4 LINE L1 185 228 -6314 941 197 111 89 chrX 101545226 101545541 -75428599 + L1M4 LINE L1 185 506 -6036 25 0 0 0 chrX 101545600 101545625 -75428515 + AT_rich Low_complexity Low_complexity 1 25 0 1765 219 79 13 chrX 101545954 101546420 -75427720 + L1ME1 LINE L1 5665 6161 -5 1089 78 0 26 chrX 101546460 101546613 -75427527 + L1MA1 LINE L1 6147 6295 -7 1947 129 26 0 chrX 101547395 101547706 -75426434 + L1PA16 LINE L1 5837 6155 -11 33 0 0 0 chrX 101547707 101547740 -75426400 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrX 101547939 101547972 -75426168 + AT_rich Low_complexity Low_complexity 1 33 0 2167 165 19 38 chrX 101548342 101548815 -75425325 + L1MB8 LINE L1 5709 6172 -6 2309 88 0 3 chrX 101548834 101549131 -75425009 + AluSg SINE Alu 1 296 -14 876 76 0 23 chrX 101549259 101549391 -75424749 - L1MA9 LINE L1 0 6312 6184 23 68 0 0 chrX 101549882 101549926 -75424214 + AT_rich Low_complexity Low_complexity 1 44 0 2393 96 0 3 chrX 101550411 101550723 -75423417 - AluSp SINE Alu -2 311 1 22 0 0 0 chrX 101551761 101551783 -75422357 + AT_rich Low_complexity Low_complexity 1 22 0 1881 112 61 4 chrX 101551961 101552238 -75421902 - AluSg SINE Alu -17 293 1 1602 204 0 3 chrX 101552723 101553028 -75421112 + AluJb SINE Alu 1 304 0 300 313 55 0 chrX 101553051 101553179 -75420961 + L1ME1 LINE L1 5769 5903 -263 970 306 133 52 chrX 101554459 101555740 -75418400 - L2 LINE L2 -2 3311 1931 260 362 0 9 chrX 101555741 101555846 -75418294 - L2 LINE L2 -1045 2269 2166 191 62 62 0 chrX 101557467 101557499 -75416641 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chrX 101557627 101557655 -75416485 + AT_rich Low_complexity Low_complexity 1 28 0 2319 93 0 6 chrX 101557832 101558144 -75415996 + AluSg SINE Alu 1 310 0 1039 213 52 109 chrX 101559579 101559889 -75414251 + L1MC4a LINE L1 5444 5727 -2081 2386 98 22 30 chrX 101559889 101560256 -75413884 + THE1B LTR MaLR 1 364 0 1039 213 52 109 chrX 101560256 101560348 -75413792 + L1MC4a LINE L1 5727 5823 -1985 320 283 181 35 chrX 101560376 101560602 -75413538 + L1MC4a LINE L1 6066 6324 -1484 24 0 0 0 chrX 101560692 101560716 -75413424 + AT_rich Low_complexity Low_complexity 1 24 0 702 281 56 61 chrX 101560757 101560997 -75413143 + L1MC4 LINE L1 6429 6669 -1139 2189 58 0 4 chrX 101560997 101561273 -75412867 + AluY SINE Alu 35 309 -2 702 281 56 61 chrX 101561273 101561691 -75412449 + L1MC4 LINE L1 6669 6951 -857 261 245 0 0 chrX 101561924 101561977 -75412163 - L1ME2 LINE L1 -9 6155 6103 395 185 54 11 chrX 101562022 101562114 -75412026 + L1MC5 LINE L1 7347 7442 -519 600 290 72 21 chrX 101562139 101562515 -75411625 + L1MC5 LINE L1 7506 7900 -61 29 0 0 0 chrX 101562759 101562788 -75411352 + AT_rich Low_complexity Low_complexity 1 29 0 409 304 0 18 chrX 101563100 101563212 -75410928 - MIR3 SINE MIR -12 196 87 21 57 0 0 chrX 101563659 101563694 -75410446 + AT_rich Low_complexity Low_complexity 1 35 0 518 199 44 119 chrX 101564632 101564858 -75409282 + L1MC4a LINE L1 5712 5920 -1888 809 348 22 13 chrX 101567182 101567630 -75406510 + MER89-int LTR ERV1 6072 6523 -278 1771 204 82 21 chrX 101567822 101568404 -75405736 + MER76 LTR ERV 12 688 0 2145 8 4 0 chrX 101569626 101569872 -75404268 + L1PA5 LINE L1 5894 6140 -14 219 273 45 0 chrX 101571412 101571478 -75402662 + L2 LINE L2 2273 2341 -973 586 277 23 6 chrX 101571485 101571662 -75402478 - MIR SINE MIR 0 262 83 200 292 194 0 chrX 101571793 101571865 -75402275 + L2 LINE L2 3186 3271 -1 677 251 31 0 chrX 101572517 101572680 -75401460 - MER5A DNA MER1_type -11 178 11 1869 154 0 3 chrX 101572947 101573233 -75400907 - AluJb SINE Alu -27 285 1 2014 160 13 27 chrX 101573267 101573641 -75400499 + THE1C LTR MaLR 7 375 0 3663 213 57 33 chrX 101573643 101575345 -75398795 - L1ME1 LINE L1 -92 6008 4250 1370 135 12 33 chrX 101575348 101575592 -75398548 + L1MD2 LINE L1 5692 5930 -429 5029 117 24 0 chrX 101575592 101576490 -75397650 - L1PA16 LINE L1 -3 6163 5286 198 0 0 0 chrX 101576490 101576512 -75397628 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 5029 117 24 0 chrX 101576512 101576929 -75397211 - L1PA16 LINE L1 -880 5286 4880 3733 251 88 37 chrX 101576949 101578573 -75395567 - L1ME1 LINE L1 -1821 4259 2553 557 183 10 0 chrX 101578578 101578682 -75395458 - L1ME1 LINE L1 -3582 2498 2394 * 1200 323 21 23 chrX 101578673 101579518 -75394622 - L1ME1 LINE L1 -4437 1684 904 39452 48 1 0 chrX 101579556 101585702 -75388438 + L1PA5 LINE L1 3 6153 -1 1305 298 80 48 chrX 101585716 101586516 -75387624 - L1ME1 LINE L1 -5234 836 11 406 250 18 27 chrX 101586662 101586774 -75387366 + MER103 DNA DNA 6 116 -50 1841 139 37 0 chrX 101587072 101587366 -75386774 + AluSx SINE Alu 1 305 -7 259 135 0 0 chrX 101587651 101587688 -75386452 - MER41A LTR ERV1 0 554 518 493 236 118 14 chrX 101587695 101587839 -75386301 + MER58C DNA MER1_type 53 211 -4 24 0 0 0 chrX 101587930 101587954 -75386186 + AT_rich Low_complexity Low_complexity 1 24 0 281 321 179 14 chrX 101589668 101589808 -75384332 - L2 LINE L2 -8 3264 3102 25 0 0 0 chrX 101589817 101589842 -75384298 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chrX 101590469 101590499 -75383641 + AT_rich Low_complexity Low_complexity 1 30 0 371 229 33 41 chrX 101590930 101591052 -75383088 + MIR3 SINE MIR 87 207 -1 272 305 173 15 chrX 101591435 101591530 -75382610 + L1M4 LINE L1 4735 4814 -1332 198 0 0 0 chrX 101591530 101591552 -75382588 + (CA)n Simple_repeat Simple_repeat 1 22 0 272 305 173 15 chrX 101591552 101591653 -75382487 + L1M4 LINE L1 4814 4962 -1184 260 359 30 36 chrX 101591705 101591872 -75382268 - MER5A DNA MER1_type -10 179 14 692 278 36 58 chrX 101592415 101592947 -75381193 + L1MEd LINE L1 682 1201 -4918 244 350 22 15 chrX 101593049 101593186 -75380954 + HAL1 LINE L1 1426 1563 -944 13072 190 40 49 chrX 101593204 101596406 -75377734 - L1MA3 LINE L1 -284 6723 3495 262 0 26 26 chrX 101596406 101596445 -75377695 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 7724 18 0 0 chrX 101596446 101597466 -75376674 - L1PA3 LINE L1 -7 6148 5132 13072 190 40 49 chrX 101597466 101600318 -75373822 - L1MA3 LINE L1 -3511 3496 691 229 271 21 0 chrX 101600670 101600742 -75373398 + L1MC4 LINE L1 7502 7578 -464 1632 207 0 6 chrX 101600742 101601056 -75373084 + AluJb SINE Alu 1 312 0 229 271 21 0 chrX 101601056 101601079 -75373061 + L1MC4 LINE L1 7578 7599 -443 1114 84 18 0 chrX 101601081 101601248 -75372892 + (GAAA)n Simple_repeat Simple_repeat 4 173 0 439 143 33 0 chrX 101601257 101601348 -75372792 + GA-rich Low_complexity Low_complexity 3 96 0 2842 260 39 20 chrX 101601383 101602084 -75372056 + L1MB8 LINE L1 11 724 -6135 3838 245 35 8 chrX 101602094 101603414 -75370726 + L1MB8 LINE L1 2762 4070 -2887 4941 196 53 34 chrX 101603462 101603675 -75370465 + L1MB8 LINE L1 4782 4989 -2000 674 43 0 11 chrX 101603675 101603768 -75370372 - L1MA1 LINE L1 0 6302 6211 4941 196 53 34 chrX 101603768 101604635 -75369505 + L1MB8 LINE L1 4989 5838 -1151 2212 84 10 7 chrX 101604635 101604931 -75369209 + AluSx SINE Alu 1 297 -15 4941 196 53 34 chrX 101604931 101606015 -75368125 + L1MB8 LINE L1 5838 6989 0 1541 256 78 18 chrX 101606052 101606541 -75367599 - LTR40a LTR ERVL 0 519 2 431 291 64 18 chrX 101606594 101606814 -75367326 + L1MC4 LINE L1 7689 7918 -124 240 264 55 22 chrX 101606873 101606964 -75367176 + L1MC4 LINE L1 7929 8022 -20 868 278 129 14 chrX 101607075 101607586 -75366554 + L1ME2 LINE L1 3059 3628 -3329 303 283 152 0 chrX 101607606 101607744 -75366396 + L1ME2 LINE L1 4399 4557 -2400 507 259 63 0 chrX 101607807 101607981 -75366159 + L1ME2 LINE L1 4993 5177 -1780 284 245 152 55 chrX 101608096 101608333 -75365807 + HAL1 LINE L1 2029 2288 -219 199 313 89 28 chrX 101608528 101608707 -75365433 + L2 LINE L2 2338 2527 -787 246 284 45 34 chrX 101608720 101608808 -75365332 - MIR3 SINE MIR -9 199 111 184 302 147 35 chrX 101610159 101610275 -75363865 - L3 LINE CR1 -35 1542 1414 231 299 10 41 chrX 101610792 101610889 -75363251 - MIR SINE MIR -69 193 100 1712 202 62 50 chrX 101613654 101614497 -75359643 + L1ME2 LINE L1 5536 6389 -586 891 47 0 0 chrX 101614503 101614609 -75359531 - AluY SINE Alu -19 292 187 619 234 18 12 chrX 101614615 101614782 -75359358 + L1ME2 LINE L1 6393 6560 -415 3443 77 7 0 chrX 101614807 101615263 -75358877 + MER11C LTR ERVK 517 975 -96 31 0 0 0 chrX 101615263 101615294 -75358846 + AT_rich Low_complexity Low_complexity 1 31 0 962 229 74 39 chrX 101615300 101615663 -75358477 + L1ME2 LINE L1 6590 6965 -10 1116 120 14 57 chrX 101615785 101615994 -75358146 - L1MB8 LINE L1 -59 6119 5920 1908 226 28 20 chrX 101615995 101616496 -75357644 - L1M4 LINE L1 -1145 5001 4497 386 224 0 0 chrX 101616694 101616772 -75357368 + L1MC4 LINE L1 7831 7908 -134 1031 115 52 16 chrX 101616772 101616964 -75357176 + L1MA5A LINE L1 6099 6297 0 234 190 35 35 chrX 101617395 101617453 -75356687 + L1MC4a LINE L1 6547 6604 -1204 10069 145 15 32 chrX 101617494 101618371 -75355769 - L1PA14 LINE L1 -5 6156 5266 1661 86 25 0 chrX 101618371 101618615 -75355525 - L1PA13 LINE L1 -3 6160 5911 10069 145 15 32 chrX 101618615 101619992 -75354148 - L1PA14 LINE L1 -895 5266 3967 2172 109 0 0 chrX 101619992 101620285 -75353855 - AluY SINE Alu -18 293 1 10069 145 15 32 chrX 101620285 101620870 -75353270 - L1PA14 LINE L1 -2194 3967 3374 251 206 0 32 chrX 101620838 101620901 -75353239 + L1MC4a LINE L1 6598 6658 -1150 * 827 168 14 0 chrX 101620903 101621046 -75353094 + AluJb SINE Alu 138 282 -30 2036 140 0 56 chrX 101621048 101621404 -75352736 + MER1B DNA MER1_type 2 337 0 509 44 15 0 chrX 101621408 101621476 -75352664 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 1541 227 14 77 chrX 101621495 101622009 -75352131 + L1MC5 LINE L1 6652 7130 -831 1318 220 73 17 chrX 101622009 101622363 -75351777 - MLT1A2 LTR MaLR 0 374 1 1541 227 14 77 chrX 101622363 101622408 -75351732 + L1MC5 LINE L1 7130 7176 -785 6746 146 19 8 chrX 101622419 101624521 -75349619 - L1PB3 LINE L1 0 6154 4024 340 251 93 60 chrX 101624523 101624706 -75349434 + L1MC5 LINE L1 7161 7349 -612 6632 213 63 34 chrX 101625064 101626099 -75348041 - L1ME1 LINE L1 -20 6146 5143 829 208 107 15 chrX 101626099 101626296 -75347844 + MER58C DNA MER1_type 1 215 0 6632 213 63 34 chrX 101626296 101627964 -75346176 - L1ME1 LINE L1 -1023 5143 3347 411 225 58 0 chrX 101629339 101629459 -75344681 + L1MC4a LINE L1 5313 5439 -2369 2458 226 106 38 chrX 101629461 101630820 -75343320 + L1ME2 LINE L1 4657 6153 -11 22 0 0 0 chrX 101631063 101631085 -75343055 + AT_rich Low_complexity Low_complexity 1 22 0 1330 261 97 13 chrX 101631199 101631725 -75342415 + L1MC4a LINE L1 5423 5992 -1816 655 49 0 0 chrX 101631725 101631806 -75342334 + AluSg SINE Alu 28 108 -202 1180 254 43 3 chrX 101631808 101632158 -75341982 - L1M4 LINE L1 -1397 4749 4386 346 206 129 26 chrX 101632916 101633071 -75341069 + HAL1 LINE L1 935 1105 -1402 1167 246 107 40 chrX 101633102 101633634 -75340506 + HAL1 LINE L1 1912 2479 -28 36 0 0 0 chrX 101634334 101634370 -75339770 + AT_rich Low_complexity Low_complexity 1 36 0 2800 181 11 24 chrX 101634676 101634849 -75339291 - MER44D DNA MER2_type -1886 601 427 2413 84 0 0 chrX 101634849 101635147 -75338993 + AluSq SINE Alu 1 298 -15 2800 181 11 24 chrX 101635147 101635525 -75338615 - MER44D DNA MER2_type -2060 427 2 1302 278 94 30 chrX 101635647 101636460 -75337680 + L2 LINE L2 2438 3313 0 515 293 75 7 chrX 101636633 101636780 -75337360 - MIR3 SINE MIR -32 176 20 304 320 33 25 chrX 101638207 101638329 -75335811 - L1ME3A LINE L1 -2 6168 6046 2801 16 0 0 chrX 101638476 101638784 -75335356 + AluY SINE Alu 1 308 -3 227 285 138 49 chrX 101639184 101639307 -75334833 - L2 LINE L2 -2 3270 3137 466 264 84 39 chrX 101639812 101639990 -75334150 - L2 LINE L2 0 3313 3128 272 236 24 8 chrX 101640376 101640503 -75333637 + CT-rich Low_complexity Low_complexity 3 131 0 271 366 94 5 chrX 101641306 101641519 -75332621 - L2 LINE L2 -558 2756 2525 2272 110 0 0 chrX 101644038 101644338 -75329802 + AluSg SINE Alu 1 300 -10 434 306 78 4 chrX 101644457 101644738 -75329402 + L1ME4a LINE L1 5603 5904 -217 384 77 0 0 chrX 101645578 101645630 -75328510 + (GGGAGA)n Simple_repeat Simple_repeat 3 54 0 243 61 0 0 chrX 101652511 101652544 -75321596 + (CA)n Simple_repeat Simple_repeat 2 34 0 300 70 0 0 chrX 101653244 101653287 -75320853 + (TGG)n Simple_repeat Simple_repeat 2 44 0 286 191 63 0 chrX 101653554 101653617 -75320523 + MIR SINE MIR 193 259 -3 23 54 0 0 chrX 101653951 101653988 -75320152 + AT_rich Low_complexity Low_complexity 1 37 0 305 227 113 10 chrX 101655006 101655103 -75319037 - MIR SINE MIR -134 128 22 379 96 0 0 chrX 101659811 101659863 -75314277 - Alu SINE Alu -13 289 238 761 142 0 0 chrX 101659863 101659976 -75314164 - AluJb SINE Alu -198 114 2 455 174 0 71 chrX 101660112 101660210 -75313930 + FRAM SINE Alu 63 153 -23 228 35 0 0 chrX 101660949 101660978 -75313162 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 262 321 9 9 chrX 101662391 101662500 -75311640 + (TG)n Simple_repeat Simple_repeat 2 110 0 189 74 0 0 chrX 101663549 101663576 -75310564 + (TA)n Simple_repeat Simple_repeat 1 27 0 2528 72 3 0 chrX 101664003 101664309 -75309831 - AluSp SINE Alu -6 307 1 207 167 0 0 chrX 101664857 101664899 -75309241 + (TA)n Simple_repeat Simple_repeat 1 42 0 3375 237 108 63 chrX 101667257 101667590 -75306550 + L1MEc LINE L1 34 350 -6046 270 0 0 0 chrX 101667590 101667620 -75306520 + (CA)n Simple_repeat Simple_repeat 1 30 0 3375 237 108 63 chrX 101667620 101668012 -75306128 + L1MEc LINE L1 350 723 -5673 2343 102 0 0 chrX 101668012 101668325 -75305815 + AluSq SINE Alu 1 313 0 3375 237 108 63 chrX 101668325 101669183 -75304957 + L1MEc LINE L1 723 1706 -4690 4638 109 20 54 chrX 101669183 101670014 -75304126 + L1MA1 LINE L1 5493 6295 -7 3375 237 108 63 chrX 101670014 101670164 -75303976 + L1MEc LINE L1 1706 1848 -4548 6675 208 15 45 chrX 101670182 101671936 -75302204 + L1M4 LINE L1 8 1709 -4833 4495 165 8 1 chrX 101671947 101672779 -75301361 + L1MB3 LINE L1 5344 6181 -2 22 0 0 0 chrX 101672780 101672802 -75301338 + AT_rich Low_complexity Low_complexity 1 22 0 4113 236 59 53 chrX 101672804 101673700 -75300440 + L1M4 LINE L1 1863 2752 -3892 2081 103 35 0 chrX 101673700 101673990 -75300150 + AluSx SINE Alu 4 303 -9 4113 236 59 53 chrX 101673990 101675069 -75299071 + L1M4 LINE L1 2752 3833 -2811 1562 197 13 3 chrX 101675069 101675378 -75298762 + AluJo SINE Alu 1 312 0 4113 236 59 53 chrX 101675378 101675826 -75298314 + L1M4 LINE L1 3833 4277 -2367 6868 182 39 37 chrX 101675826 101677070 -75297070 + L1MB5 LINE L1 3519 4759 -1415 1483 206 32 0 chrX 101677070 101677352 -75296788 + AluJo SINE Alu 1 291 -21 6868 182 39 37 chrX 101677352 101677996 -75296144 + L1MB5 LINE L1 4759 5400 -774 1646 154 21 25 chrX 101677996 101678281 -75295859 + AluJo SINE Alu 7 290 -22 6868 182 39 37 chrX 101678281 101679042 -75295098 + L1MB5 LINE L1 5400 6174 0 1536 176 53 15 chrX 101679043 101679383 -75294757 + L1MB7 LINE L1 5816 6168 -16 * 1901 228 77 7 chrX 101679379 101680115 -75294025 + L1MEc LINE L1 1849 2584 -3631 290 229 30 76 chrX 101681168 101681299 -75292841 + MIR SINE MIR 72 196 -66 494 315 73 52 chrX 101682269 101682691 -75291449 - LTR33 LTR ERVL -1 520 90 587 165 204 17 chrX 101682986 101683162 -75290978 + MER6B DNA MER2_type 1 209 -1 1664 83 9 0 chrX 101683591 101683809 -75290331 + AluSp SINE Alu 90 309 -4 229 275 29 0 chrX 101684269 101684338 -75289802 + (TA)n Simple_repeat Simple_repeat 1 71 0 420 20 0 0 chrX 101684399 101684448 -75289692 + (CA)n Simple_repeat Simple_repeat 2 50 0 235 47 0 47 chrX 101684664 101684707 -75289433 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2006 104 10 10 chrX 101684911 101685187 -75288953 + AluSx SINE Alu 5 302 -10 352 0 0 0 chrX 101685187 101685226 -75288914 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 2006 104 10 10 chrX 101685226 101685238 -75288902 + AluSx SINE Alu 301 312 0 21 0 0 0 chrX 101685643 101685664 -75288476 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 101686125 101686156 -75287984 + AT_rich Low_complexity Low_complexity 1 31 0 195 316 77 26 chrX 101687790 101687907 -75286233 + MIR3 SINE MIR 11 133 -75 285 29 0 0 chrX 101689499 101689533 -75284607 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 351 206 17 chrX 101689764 101690171 -75283969 + L2 LINE L2 2403 2886 -428 296 276 77 32 chrX 101690948 101691104 -75283036 + MER104 DNA Tc2 1 163 -17 249 179 34 137 chrX 101691443 101691560 -75282580 - Charlie2 DNA MER1_type -9 2853 2749 547 129 52 69 chrX 101691566 101691682 -75282458 + LTR50 LTR ERVL 1 114 -681 1307 216 118 5 chrX 101691685 101692133 -75282007 - Charlie2 DNA MER1_type -130 2732 2234 460 169 22 0 chrX 101692190 101692279 -75281861 - L1MA4A LINE L1 -23 6280 6190 3045 138 19 6 chrX 101692281 101692801 -75281339 - L1MA4A LINE L1 -178 6125 5599 613 300 102 27 chrX 101692810 101693103 -75281037 - Charlie2 DNA MER1_type -2547 315 1 231 260 123 68 chrX 101693340 101693486 -75280654 + MIR SINE MIR 65 218 -44 30 27 0 0 chrX 101694324 101694361 -75279779 + AT_rich Low_complexity Low_complexity 1 37 0 244 360 0 0 chrX 101694443 101694529 -75279611 + GA-rich Low_complexity Low_complexity 2 87 0 2185 90 0 3 chrX 101694840 101695157 -75278983 + AluSg SINE Alu 2 317 0 23 0 0 0 chrX 101695698 101695721 -75278419 + AT_rich Low_complexity Low_complexity 1 23 0 9024 88 10 0 chrX 101698346 101699632 -75274508 - L1PA7 LINE L1 -2032 4114 2816 9295 81 18 5 chrX 101699632 101701667 -75272473 + L1PA7 LINE L1 4103 6153 -1 650 318 5 5 chrX 101702963 101703164 -75270976 + MIR SINE MIR 3 203 -59 1857 194 138 31 chrX 101703164 101703649 -75270491 + MER101B LTR ERV1 1 537 -33 562 194 0 0 chrX 101703748 101703856 -75270284 - FLAM_A SINE Alu 0 142 35 2462 259 55 24 chrX 101703954 101704860 -75269280 + L1MC4 LINE L1 6872 7805 -237 641 148 9 9 chrX 101704870 101704978 -75269162 - FLAM_C SINE Alu -23 120 13 319 261 63 18 chrX 101705050 101705161 -75268979 + L1MC4 LINE L1 7806 7921 -121 24 32 0 0 chrX 101706288 101706319 -75267821 + AT_rich Low_complexity Low_complexity 1 31 0 691 159 19 164 chrX 101706419 101706516 -75267624 - MER5A DNA MER1_type -6 183 132 738 86 57 0 chrX 101706516 101706621 -75267519 + HY1 scRNA scRNA 1 111 -1 691 159 19 164 chrX 101706621 101706737 -75267403 - MER5A DNA MER1_type -57 132 1 959 239 29 21 chrX 101707511 101707749 -75266391 + MIR SINE MIR 2 241 -21 24 53 0 0 chrX 101707759 101707797 -75266343 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chrX 101708775 101708796 -75265344 + AT_rich Low_complexity Low_complexity 1 21 0 190 27 0 81 chrX 101709495 101709532 -75264608 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2102 107 0 0 chrX 101709534 101709814 -75264326 - AluSx SINE Alu -32 280 1 275 0 29 0 chrX 101709814 101709849 -75264291 + (TTA)n Simple_repeat Simple_repeat 3 38 0 514 308 64 48 chrX 101710195 101710436 -75263704 + MIR SINE MIR 2 241 -21 218 273 136 34 chrX 101710403 101710491 -75263649 - L2 LINE L2 -22 3250 3154 * 434 266 0 0 chrX 101711549 101711643 -75262497 + MIR SINE MIR 43 136 -72 2118 170 43 19 chrX 101711643 101712060 -75262080 + MER31B LTR ERV1 1 427 -39 269 100 0 0 chrX 101712090 101712130 -75262010 + MIR3 SINE MIR 166 205 -3 26 0 0 0 chrX 101712208 101712234 -75261906 + AT_rich Low_complexity Low_complexity 1 26 0 1867 129 0 0 chrX 101712551 101712814 -75261326 - AluSx SINE Alu -49 263 1 189 0 0 0 chrX 101716451 101716472 -75257668 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1887 147 14 3 chrX 101717513 101717805 -75256335 - AluSx SINE Alu -17 295 1 22 35 0 0 chrX 101718207 101718236 -75255904 + AT_rich Low_complexity Low_complexity 1 29 0 352 221 21 11 chrX 101718313 101718408 -75255732 - L1ME LINE L1 -356 5806 5711 * 1959 236 46 15 chrX 101718406 101719374 -75254766 - L1ME LINE L1 -395 5769 4768 2215 102 0 0 chrX 101719375 101719669 -75254471 - AluSg SINE Alu -16 294 1 838 249 24 14 chrX 101719669 101719818 -75254322 - L1ME LINE L1 -1447 4699 4544 2148 89 6 16 chrX 101719818 101720131 -75254009 - L1PA10 LINE L1 -1 6167 5858 838 249 24 14 chrX 101720131 101720270 -75253870 - L1ME LINE L1 -1602 4544 4408 259 340 33 7 chrX 101720266 101720416 -75253724 + L1ME LINE L1 139 292 -5913 * 729 179 21 10 chrX 101720437 101720600 -75253540 - MLT1E LTR MaLR 0 593 390 3567 71 10 4 chrX 101720602 101721094 -75253046 - L1P LINE L1 -1394 4752 4258 241 163 0 41 chrX 101721110 101721159 -75252981 - MLT1E3 LTR MaLR -575 49 3 268 337 11 0 chrX 101721173 101721262 -75252878 + L1ME LINE L1 1629 1718 -4678 * 1379 36 6 0 chrX 101721255 101721421 -75252719 - L1PA4 LINE L1 -232 5923 5757 * 1880 56 0 24 chrX 101721396 101721647 -75252493 + L1PA4 LINE L1 5907 6151 -4 22 70 0 0 chrX 101721648 101721691 -75252449 + AT_rich Low_complexity Low_complexity 1 43 0 495 293 121 31 chrX 101721808 101722361 -75251779 + L1ME3 LINE L1 689 1291 -5105 1598 143 30 158 chrX 101722361 101722759 -75251381 - MER7A DNA MER2_type 0 346 2 7609 273 55 16 chrX 101722759 101727554 -75246586 + L1ME3 LINE L1 1289 6229 -2 732 246 89 0 chrX 101728304 101728495 -75245645 - MIR SINE MIR -4 258 51 411 283 246 26 chrX 101728524 101728715 -75245425 - MIR SINE MIR -28 234 2 1539 160 4 11 chrX 101728859 101729127 -75245013 + AluJo SINE Alu 33 298 -14 1205 232 68 0 chrX 101729942 101730192 -75243948 + Tigger7 DNA MER2_type 1 267 -466 573 147 9 28 chrX 101730187 101730296 -75243844 + Tigger7 DNA MER2_type 2481 2587 0 * 21 36 0 0 chrX 101730385 101730413 -75243727 + AT_rich Low_complexity Low_complexity 1 28 0 1608 129 61 23 chrX 101731315 101731625 -75242515 - L1MA10 LINE L1 -1 6333 6012 2027 163 12 12 chrX 101732217 101732617 -75241523 - L1MB8 LINE L1 -6 6172 5773 8800 172 11 16 chrX 101732634 101734397 -75239743 - L1PB1 LINE L1 0 6867 5104 234 0 0 0 chrX 101734397 101734423 -75239717 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 8800 172 11 16 chrX 101734423 101735390 -75238750 - L1PB1 LINE L1 -1763 5104 4134 15459 26 1 0 chrX 101735393 101737986 -75236154 + L1PA4 LINE L1 3553 6147 -8 8544 157 48 18 chrX 101738072 101738637 -75235503 - L1PB1 LINE L1 -2725 4137 3591 2156 116 0 22 chrX 101738637 101738956 -75235184 - AluSx SINE Alu 0 312 1 8544 157 48 18 chrX 101738956 101741207 -75232933 - L1PB1 LINE L1 -3271 3591 1093 3670 224 60 8 chrX 101741211 101742200 -75231940 - L1PB1 LINE L1 -5818 1045 6 2264 179 64 0 chrX 101742236 101742672 -75231468 - L1M4 LINE L1 -398 5780 5317 567 148 37 0 chrX 101742684 101742792 -75231348 - L1MA7 LINE L1 0 6291 6180 695 169 7 7 chrX 101742815 101742963 -75231177 - L1MB3 LINE L1 -16 6167 6020 9750 210 28 55 chrX 101742965 101745596 -75228544 - L1MA9 LINE L1 -101 6211 3511 700 129 57 32 chrX 101745596 101745720 -75228420 + AluJb SINE Alu 171 297 -15 9750 210 28 55 chrX 101745720 101746341 -75227799 - L1MA9 LINE L1 -2801 3511 2939 1874 154 38 0 chrX 101746341 101746634 -75227506 + AluSx SINE Alu 2 305 -7 9750 210 28 55 chrX 101746634 101746933 -75227207 - L1MA9 LINE L1 -3373 2939 2633 2415 179 53 112 chrX 101746928 101747434 -75226706 - L1M4 LINE L1 -806 5340 4899 * 1494 186 28 16 chrX 101747434 101747756 -75226384 - L1PA16 LINE L1 -3 6163 5838 2415 179 53 112 chrX 101747756 101748063 -75226077 - L1M4 LINE L1 -1247 4899 4575 230 316 13 0 chrX 101748144 101748223 -75225917 - MIR3 SINE MIR -4 204 125 380 301 91 16 chrX 101748294 101748480 -75225660 - MIR SINE MIR -60 202 3 4862 179 26 13 chrX 101748677 101749676 -75224464 - Tigger6a DNA MER2_type -2 1081 32 373 297 24 12 chrX 101750086 101750251 -75223889 + L1MC4a LINE L1 4881 5047 -1099 238 291 58 0 chrX 101750342 101750428 -75223712 + L2 LINE L2 1337 1427 -1887 12638 58 4 2 chrX 101750434 101752085 -75222055 - L1PA6 LINE L1 -1847 4299 2645 8258 57 10 0 chrX 101752085 101753929 -75220211 + L1PA6 LINE L1 4320 6154 0 1842 259 105 17 chrX 101753934 101754796 -75219344 + L2 LINE L2 2358 3313 0 347 229 41 58 chrX 101754849 101755031 -75219109 + L1MC4a LINE L1 5167 5357 -789 639 326 66 37 chrX 101755033 101755548 -75218592 + L1MC4a LINE L1 5381 5910 -1898 358 245 34 34 chrX 101755590 101755737 -75218403 - MER104 DNA Tc2 -31 149 3 241 219 34 10 chrX 101755949 101756034 -75218106 + L1MC/D LINE L1 5592 5679 -485 22 35 0 0 chrX 101756314 101756343 -75217797 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chrX 101756481 101756521 -75217619 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chrX 101758072 101758100 -75216040 + AT_rich Low_complexity Low_complexity 1 28 0 525 354 36 25 chrX 101758634 101758908 -75215232 + L3b LINE CR1 1279 1555 -28 220 284 9 95 chrX 101759550 101759666 -75214474 + MIR3 SINE MIR 98 203 -5 2223 97 0 10 chrX 101761146 101761445 -75212695 + AluY SINE Alu 4 299 -12 306 267 51 23 chrX 101761949 101762109 -75212031 + MLT1G1 LTR MaLR 3 171 -383 1806 148 0 39 chrX 101762109 101762572 -75211568 + AluJo SINE Alu 1 451 0 437 263 87 77 chrX 101762580 101762966 -75211174 + MLT1G1 LTR MaLR 159 594 -1 1091 194 128 7 chrX 101763509 101763798 -75210342 - MER5C DNA MER1_type 0 324 1 202 253 165 0 chrX 101764122 101764201 -75209939 + MIR SINE MIR 59 150 -112 27 0 0 0 chrX 101765146 101765173 -75208967 + AT_rich Low_complexity Low_complexity 1 27 0 199 113 38 0 chrX 101766688 101766741 -75207399 + (TA)n Simple_repeat Simple_repeat 2 56 0 2185 98 20 0 chrX 101767038 101767335 -75206805 + AluSq SINE Alu 1 303 -10 21 71 0 0 chrX 101767755 101767797 -75206343 + AT_rich Low_complexity Low_complexity 1 42 0 304 259 7 96 chrX 101869055 101869190 -75104950 + LTR67 LTR ERVL 426 548 -9 186 71 0 0 chrX 101870308 101870336 -75103804 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 856 241 30 5 chrX 101870336 101870539 -75103601 - MIR SINE MIR -3 259 52 321 271 161 7 chrX 101871061 101871216 -75102924 - MIR SINE MIR 0 262 84 889 251 66 17 chrX 101871642 101871956 -75102184 + MLT1J LTR MaLR 23 409 -102 296 294 101 18 chrX 101872067 101872176 -75101964 - MIR3 SINE MIR -17 191 74 190 316 20 41 chrX 101872355 101872453 -75101687 - MER5B DNA MER1_type 0 178 83 * 192 151 0 132 chrX 101872434 101872487 -75101653 + MER5A DNA MER1_type 124 169 -20 * 226 229 16 33 chrX 101872457 101872518 -75101622 - MER5A DNA MER1_type -129 60 1 1006 154 42 75 chrX 101873277 101873520 -75100620 + AluJo SINE Alu 76 311 0 2312 101 0 0 chrX 101873678 101873985 -75100155 - AluSg1 SINE Alu -1 308 2 768 229 59 6 chrX 101874448 101874618 -75099522 + MIR3 SINE MIR 23 201 -7 203 286 0 0 chrX 101874675 101874717 -75099423 - MER5A DNA MER1_type 0 189 148 950 262 41 4 chrX 101874742 101875009 -75099131 + L1MC4a LINE L1 5661 5937 -1871 314 122 81 35 chrX 101875009 101875181 -75098959 + (TA)n Simple_repeat Simple_repeat 1 180 0 337 307 84 44 chrX 101875202 101875427 -75098713 + L1MC4a LINE L1 5958 6191 -1617 812 164 0 0 chrX 101875771 101875899 -75098241 - MSTA LTR MaLR 0 428 301 591 101 22 0 chrX 101875942 101876031 -75098109 - MSTA LTR MaLR -336 92 2 426 260 48 120 chrX 101876394 101876602 -75097538 - MIR SINE MIR -48 214 22 572 48 58 0 chrX 101877694 101877797 -75096343 + A-rich Low_complexity Low_complexity 2 110 0 1053 216 12 37 chrX 101877841 101878082 -75096058 + MIR SINE MIR 23 257 -5 333 304 246 0 chrX 101878096 101878139 -75096001 - L2 LINE L2 -1 3312 3281 1211 210 13 13 chrX 101878139 101878363 -75095777 - MER58A DNA MER1_type 0 224 1 333 304 246 0 chrX 101878363 101878559 -75095581 - L2 LINE L2 -32 3281 3014 1726 164 37 74 chrX 101878724 101878962 -75095178 - MLT1A1 LTR MaLR 0 365 145 2002 142 10 0 chrX 101878962 101879265 -75094875 - AluJb SINE Alu -6 306 1 1726 164 37 74 chrX 101879265 101879405 -75094735 - MLT1A1 LTR MaLR -220 145 1 752 246 98 30 chrX 101879455 101879691 -75094449 + MIR SINE MIR 3 254 -8 1598 186 26 85 chrX 101879785 101879947 -75094193 + MLT1A1 LTR MaLR 1 171 -194 2077 137 10 0 chrX 101879947 101880254 -75093886 + AluSg SINE Alu 1 310 0 1598 186 26 85 chrX 101880254 101880479 -75093661 + MLT1A1 LTR MaLR 171 365 0 531 268 98 17 chrX 101880536 101880771 -75093369 - MIR SINE MIR -8 254 1 26 30 0 0 chrX 101881364 101881397 -75092743 + AT_rich Low_complexity Low_complexity 1 33 0 342 147 0 0 chrX 101882573 101882641 -75091499 + (TG)n Simple_repeat Simple_repeat 2 69 0 1467 171 0 18 chrX 101882731 101882959 -75091181 - MER58A DNA MER1_type 0 224 1 410 239 86 37 chrX 101883564 101883727 -75090413 + MER117 DNA MER1_type 3 173 -24 209 289 62 124 chrX 101884001 101884323 -75089817 - L2 LINE L2 -17 3296 2995 252 0 0 0 chrX 101884485 101884513 -75089627 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 7001 131 9 16 chrX 101884717 101885703 -75088437 - L1MA3 LINE L1 0 7724 6749 2158 117 17 0 chrX 101885703 101885994 -75088146 - AluSx SINE Alu -16 296 1 7001 131 9 16 chrX 101885994 101886789 -75087351 - L1MA3 LINE L1 -975 6749 5950 1731 106 125 0 chrX 101886789 101887053 -75087087 - AluSx SINE Alu -15 297 1 246 200 0 0 chrX 101887018 101887068 -75087072 - Alu SINE Alu -133 170 121 * 14050 150 16 1 chrX 101887054 101889252 -75084888 - L1MA3 LINE L1 -5313 2252 19 1416 279 176 7 chrX 101889390 101890062 -75084078 - L1MC4a LINE L1 -743 5403 5187 496 276 35 35 chrX 101890362 101890536 -75083604 + MER5A DNA MER1_type 2 175 -14 369 0 0 0 chrX 101890763 101890804 -75083336 + (TG)n Simple_repeat Simple_repeat 2 42 0 460 243 92 72 chrX 101891402 101891454 -75082686 + MER5A DNA MER1_type 34 83 -106 1678 153 30 43 chrX 101891454 101891754 -75082386 - AluJb SINE Alu -16 296 1 460 243 92 72 chrX 101891754 101891853 -75082287 + MER5A DNA MER1_type 83 188 -1 205 222 0 79 chrX 101892601 101892664 -75081476 - L2 LINE L2 -363 2951 2894 1076 228 13 0 chrX 101892995 101893228 -75080912 + MER106A DNA MER1_type 1 236 0 366 286 155 36 chrX 101893674 101893842 -75080298 + L2 LINE L2 321 508 -2806 1662 158 20 0 chrX 101893867 101894120 -75080020 + AluSx SINE Alu 1 258 -54 333 68 0 0 chrX 101894137 101894181 -75079959 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 809 278 106 47 chrX 101894360 101894744 -75079396 + L2 LINE L2 2664 3089 -224 2505 58 3 7 chrX 101894744 101895028 -75079112 + AluSp SINE Alu 1 285 -28 411 73 0 0 chrX 101895028 101895083 -75079057 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2505 58 3 7 chrX 101895083 101895107 -75079033 + AluSp SINE Alu 285 308 -5 809 278 106 47 chrX 101895107 101895314 -75078826 + L2 LINE L2 3089 3282 -31 1765 210 84 42 chrX 101895314 101895859 -75078281 + MLT1F1 LTR MaLR 1 567 0 993 332 75 19 chrX 101895927 101896077 -75078063 + L2 LINE L2 809 949 -2365 1679 262 40 40 chrX 101896077 101896527 -75077613 - LTR16A LTR ERVL 0 450 1 993 332 75 19 chrX 101896527 101896991 -75077149 + L2 LINE L2 949 1457 -1857 290 303 114 23 chrX 101896999 101897131 -75077009 + L2 LINE L2 2506 2649 -665 254 351 35 64 chrX 101897159 101897330 -75076810 + L2 LINE L2 2907 3072 -200 1261 165 62 5 chrX 101897391 101897615 -75076525 - MLT1F LTR MaLR 0 542 306 443 301 45 93 chrX 101898464 101898796 -75075344 - L2 LINE L2 -11 3261 2946 539 224 82 77 chrX 101899486 101899669 -75074471 - Charlie8 DNA MER1_type -2206 211 28 705 284 84 0 chrX 101899919 101900134 -75074006 - MIR SINE MIR -17 245 13 237 203 98 114 chrX 101900265 101900388 -75073752 - MIR3 SINE MIR -78 130 10 217 333 10 10 chrX 101902044 101902140 -75072000 + GA-rich Low_complexity Low_complexity 1 96 0 208 380 0 0 chrX 101902300 101902371 -75071769 + L2 LINE L2 3172 3242 -71 1019 244 86 50 chrX 101902376 101902731 -75071409 - MLT1I LTR MaLR -5 404 24 1001 229 38 70 chrX 101903235 101903388 -75070752 + L2 LINE L2 2325 2464 -850 5367 40 5 0 chrX 101903388 101903994 -75070146 + L1PA5 LINE L1 5546 6154 0 1001 229 38 70 chrX 101903994 101904155 -75069985 + L2 LINE L2 2464 2629 -685 245 271 97 101 chrX 101904171 101904459 -75069681 - MLT1I LTR MaLR -22 387 101 * 345 252 17 42 chrX 101904429 101904548 -75069592 - MLT1H LTR MaLR -387 162 47 1244 235 26 55 chrX 101904608 101904991 -75069149 + L2 LINE L2 2942 3313 0 210 268 18 0 chrX 101905705 101905761 -75068379 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 180 0 0 0 chrX 101905778 101905798 -75068342 + (TATAA)n Simple_repeat Simple_repeat 1 20 0 797 271 80 86 chrX 101905838 101906374 -75067766 + MLT1H LTR MaLR 17 549 0 596 293 50 11 chrX 101906446 101906627 -75067513 + MIR SINE MIR 75 262 0 1807 172 3 16 chrX 101907554 101907868 -75066272 - AluJb SINE Alu 0 312 3 319 232 11 53 chrX 101908978 101909073 -75065067 - MER102b DNA MER1_type -17 324 234 528 260 114 36 chrX 101909181 101909400 -75064740 - MER102b DNA MER1_type -90 251 16 415 266 28 9 chrX 101910070 101910179 -75063961 - L2 LINE L2 -1 3271 3161 591 263 13 20 chrX 101910325 101910477 -75063663 + MIR SINE MIR 20 170 -92 1197 107 200 0 chrX 101910821 101911036 -75063104 - MER6 DNA MER2_type 0 865 608 883 216 85 30 chrX 101911059 101911258 -75062882 - MER63A DNA MER1_type 0 210 1 512 171 67 0 chrX 101911306 101911411 -75062729 + MER96 DNA MER1_type? 1 112 -63 527 294 167 18 chrX 101911460 101911735 -75062405 - L2 LINE L2 0 3313 2998 2263 109 3 6 chrX 101911753 101912065 -75062075 + AluSx SINE Alu 1 311 -1 204 343 100 0 chrX 101912167 101912237 -75061903 - L2 LINE L2 0 3272 3196 * 601 285 0 13 chrX 101912231 101912382 -75061758 - MIR SINE MIR -3 259 111 515 170 0 11 chrX 101912544 101912638 -75061502 - AluJ/FRAM SINE Alu -3 309 217 194 359 137 0 chrX 101913088 101913205 -75060935 - L2 LINE L2 -257 3015 2883 437 319 14 0 chrX 101913278 101913416 -75060724 + MIR SINE MIR 102 241 -21 215 149 255 0 chrX 101913493 101913540 -75060600 + MIR SINE MIR 191 249 -13 761 202 0 0 chrX 101913824 101913938 -75060202 + FLAM_A SINE Alu 1 114 -19 1717 151 13 33 chrX 101913939 101914244 -75059896 + AluJo SINE Alu 5 303 -9 261 266 0 0 chrX 101914332 101914396 -75059744 + CT-rich Low_complexity Low_complexity 3 66 0 441 292 73 44 chrX 101914405 101914441 -75059699 - MIR SINE MIR -12 250 217 1611 133 0 0 chrX 101914441 101914659 -75059481 - AluJb SINE Alu -9 303 86 441 292 73 44 chrX 101914659 101914828 -75059312 - MIR SINE MIR -45 217 40 584 224 92 0 chrX 101914849 101915001 -75059139 - MIR SINE MIR -33 229 64 2321 99 0 0 chrX 101916087 101916381 -75057759 + AluSx SINE Alu 1 294 -18 1771 282 137 21 chrX 101916529 101917338 -75056802 - L1MC4a LINE L1 -1641 6167 5265 29 0 0 0 chrX 101917348 101917377 -75056763 + AT_rich Low_complexity Low_complexity 1 29 0 479 153 35 0 chrX 101917377 101917462 -75056678 - L1MA2 LINE L1 -1 6303 6216 2579 137 43 9 chrX 101917483 101917905 -75056235 + L1MA6 LINE L1 5865 6300 0 527 191 17 26 chrX 101918116 101918231 -75055909 - L2 LINE L2 -7 3306 3193 211 250 0 105 chrX 101918620 101918696 -75055444 + L2 LINE L2 3205 3272 0 1074 205 117 0 chrX 101918730 101918969 -75055171 - MLT1F1 LTR MaLR -7 560 294 1533 280 123 47 chrX 101919061 101919897 -75054243 - L2 LINE L2 -557 2757 1858 271 286 0 0 chrX 101920118 101920181 -75053959 - MIR SINE MIR -21 241 179 2512 44 0 0 chrX 101920381 101920678 -75053462 - AluY SINE Alu -14 297 1 261 301 45 53 chrX 101921062 101921195 -75052945 + L2 LINE L2 3182 3313 0 1241 221 40 26 chrX 101921553 101921856 -75052284 + MER46C DNA MER2_type 32 338 0 402 115 0 0 chrX 101922033 101922094 -75052046 + (TA)n Simple_repeat Simple_repeat 1 61 0 8030 28 3 0 chrX 101922094 101923479 -75050661 - L1PA5 LINE L1 -8 6146 4760 7184 31 0 0 chrX 101923479 101924313 -75049827 + L1PA5 LINE L1 3919 4752 -1394 318 199 92 30 chrX 101924666 101924797 -75049343 - MER113 DNA MER1_type? -376 145 7 228 111 0 0 chrX 101925066 101925102 -75049038 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 533 194 58 0 chrX 101925727 101925830 -75048310 - MER81 DNA DNA -1 113 5 780 261 6 6 chrX 101925964 101926144 -75047996 - MIR SINE MIR -80 182 3 287 287 112 70 chrX 101926344 101926487 -75047653 + MER5A DNA MER1_type 30 189 0 386 272 87 0 chrX 101926700 101926803 -75047337 + MIR3 SINE MIR 43 154 -54 204 189 0 0 chrX 101926796 101926833 -75047307 - MER5A DNA MER1_type -103 86 50 * 198 0 0 0 chrX 101927058 101927080 -75047060 + (A)n Simple_repeat Simple_repeat 1 22 0 1447 210 109 21 chrX 101927454 101927792 -75046348 - MSTD LTR MaLR 0 396 29 6275 137 16 2 chrX 101927792 101929572 -75044568 + L1PB1 LINE L1 4300 6099 -52 266 167 103 12 chrX 101929572 101929661 -75044479 - MSTC LTR MaLR -335 97 1 769 291 27 5 chrX 101929662 101929882 -75044258 - MIR SINE MIR -32 230 6 551 321 18 12 chrX 101930597 101930762 -75043378 - MIR3 SINE MIR -13 195 30 1044 271 43 70 chrX 101930990 101931459 -75042681 - LTR16B LTR ERVL -8 456 1 2365 104 0 0 chrX 101931989 101932288 -75041852 + AluSq SINE Alu 1 299 -14 543 272 89 114 chrX 101932456 101932894 -75041246 - L2 LINE L2 0 3313 2887 3540 244 111 12 chrX 101932901 101933792 -75040348 + L1MD2 LINE L1 141 1119 -5424 1284 210 75 43 chrX 101933778 101934149 -75039991 + L1MD2 LINE L1 1334 1716 -4824 * 1694 171 24 30 chrX 101934149 101934447 -75039693 + AluJo SINE Alu 1 296 -16 34135 40 0 2 chrX 101934449 101940624 -75033516 + L1PA4 LINE L1 1 6164 0 198 0 0 0 chrX 101941153 101941175 -75032965 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1995 212 111 2 chrX 101941195 101941729 -75032411 + L1MD2 LINE L1 1705 2296 -4244 * 4563 83 22 2 chrX 101941722 101942360 -75031780 + L1MA2 LINE L1 5433 6083 -221 836 80 0 0 chrX 101942362 101942475 -75031665 + L1MA1 LINE L1 6190 6302 0 4263 191 81 67 chrX 101942488 101943092 -75031048 + L1MD2 LINE L1 5375 5969 -784 1586 142 33 43 chrX 101943092 101943394 -75030746 + AluJb SINE Alu 1 299 -13 4263 191 81 67 chrX 101943394 101944151 -75029989 + L1MD2 LINE L1 5969 6753 0 856 233 95 61 chrX 101944152 101944543 -75029597 - L2 LINE L2 -425 2889 2486 483 285 39 0 chrX 101944780 101944910 -75029230 - MER91A DNA MER1_type -34 162 28 603 267 6 33 chrX 101947083 101947122 -75027018 + MIR SINE MIR 5 44 -218 402 21 0 0 chrX 101947122 101947169 -75026971 + (TG)n Simple_repeat Simple_repeat 2 48 0 898 134 21 0 chrX 101947169 101947311 -75026829 - L1MB4 LINE L1 -13 6167 6023 603 267 6 33 chrX 101947311 101947450 -75026690 + MIR SINE MIR 42 179 -83 182 243 0 0 chrX 101947523 101947560 -75026580 - L2 LINE L2 -19 3253 3217 698 171 0 16 chrX 101947710 101947839 -75026301 - FLAM_A SINE Alu -5 137 11 2262 121 0 6 chrX 101948072 101948433 -75025707 + AluSx SINE Alu 1 359 0 4436 92 28 5 chrX 101950182 101950820 -75023320 + MER39B LTR ERV1 1 653 0 180 0 0 0 chrX 101950833 101950853 -75023287 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2130 141 0 0 chrX 101950877 101951189 -75022951 + AluSx SINE Alu 1 312 0 333 0 0 0 chrX 101951256 101951293 -75022847 + (TA)n Simple_repeat Simple_repeat 2 38 0 2415 78 0 25 chrX 101952093 101952412 -75021728 + AluY SINE Alu 1 311 0 1586 161 22 53 chrX 101952412 101952734 -75021406 + AluJb SINE Alu 1 312 0 2528 79 0 0 chrX 101952957 101953261 -75020879 + AluSg SINE Alu 1 304 -6 1721 165 0 0 chrX 101953393 101953653 -75020487 - AluJb SINE Alu -12 300 41 859 268 84 7 chrX 101953934 101954221 -75019919 - L2 LINE L2 0 3313 3005 2761 172 44 4 chrX 101954246 101954788 -75019352 + L1MB7 LINE L1 5606 6169 -15 2316 95 7 0 chrX 101954809 101955103 -75019037 + AluSx SINE Alu 1 296 -16 1384 306 17 11 chrX 101955181 101955741 -75018399 - L2 LINE L2 -312 3001 2438 383 344 82 45 chrX 101956596 101957288 -75016852 + L2 LINE L2 2336 3048 -224 247 288 62 0 chrX 101957960 101958040 -75016100 - MIR3 SINE MIR -14 194 110 204 349 61 38 chrX 101958343 101958475 -75015665 + L2 LINE L2 3179 3313 0 376 238 48 0 chrX 101958502 101958607 -75015533 - MIR SINE MIR -48 214 105 2324 92 0 0 chrX 101958985 101959279 -75014861 + AluSc SINE Alu 1 294 -15 549 208 0 0 chrX 101959513 101959641 -75014499 - AluJb SINE Alu 0 311 184 5368 119 242 70 chrX 101959653 101960991 -75013149 + pTR5 LTR ERV1 145 2295 -143 36 0 0 0 chrX 101961002 101961038 -75013102 + AT_rich Low_complexity Low_complexity 1 36 0 262 163 82 0 chrX 101961038 101961087 -75013053 - AluJo SINE Alu -168 134 82 207 69 0 0 chrX 101961146 101961175 -75012965 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 2113 142 18 0 chrX 101961413 101961744 -75012396 + L1PA13 LINE L1 5808 6144 -19 245 268 0 0 chrX 101962264 101962335 -75011805 + MIR SINE MIR 65 135 -73 745 215 58 93 chrX 101962370 101962681 -75011459 + L1MC5 LINE L1 7609 7908 -53 915 154 0 0 chrX 101962923 101963053 -75011087 - AluSg/x SINE Alu -31 279 150 680 101 22 7 chrX 101963061 101963200 -75010940 + (TA)n Simple_repeat Simple_repeat 1 141 0 22 0 0 0 chrX 101963227 101963249 -75010891 + AT_rich Low_complexity Low_complexity 1 22 0 808 126 42 0 chrX 101963249 101963368 -75010772 - AluSq/x SINE Alu -188 124 1 180 0 0 0 chrX 101963369 101963389 -75010751 + (TA)n Simple_repeat Simple_repeat 2 21 0 526 269 134 6 chrX 101964305 101964476 -75009664 - MIR SINE MIR -65 197 5 2126 114 82 62 chrX 101965215 101965654 -75008486 + LTR7 LTR ERV1 1 448 -2 20165 90 48 4 chrX 101965656 101968516 -75005624 + HERVH LTR ERV1 1 2987 -4726 848 150 27 0 chrX 101968510 101968657 -75005483 + HERVH LTR ERV1 3140 3290 -4423 * 3072 106 0 7 chrX 101968647 101969089 -75005051 + HERVH LTR ERV1 3492 3930 -3783 424 143 63 0 chrX 101969093 101969156 -75004984 + HERVH LTR ERV1 5753 5819 -1894 2535 87 45 13 chrX 101969156 101969534 -75004606 + HERVH LTR ERV1 7324 7713 0 1959 113 66 109 chrX 101969534 101970002 -75004138 + LTR7 LTR ERV1 1 448 -2 424 333 122 35 chrX 101970029 101970964 -75003176 - L2 LINE L2 -11 3261 2245 464 146 11 0 chrX 101971208 101971297 -75002843 + GA-rich Low_complexity Low_complexity 2 91 0 693 268 25 10 chrX 101973642 101973840 -75000300 + MIR SINE MIR 27 227 -35 354 284 82 8 chrX 101974356 101974490 -74999650 - MER5B DNA MER1_type -29 149 6 413 293 0 54 chrX 101974528 101974675 -74999465 - MER5A DNA MER1_type -7 182 44 1830 222 55 54 chrX 101974825 101975366 -74998774 - MLT1F LTR MaLR 0 542 1 27 62 0 0 chrX 101975374 101975422 -74998718 + AT_rich Low_complexity Low_complexity 1 48 0 2629 107 10 23 chrX 101975917 101976309 -74997831 - MLT1B LTR MaLR 0 390 4 2512 123 44 19 chrX 101979145 101979575 -74994565 - L1PA16 LINE L1 0 6166 5726 753 271 42 5 chrX 101979637 101979851 -74994289 - MIR SINE MIR -13 249 28 1705 182 3 17 chrX 101980637 101980933 -74993207 + AluJb SINE Alu 1 292 -20 516 298 26 78 chrX 101981014 101981323 -74992817 - HAL1 LINE L1 -3 2504 2212 1234 241 81 37 chrX 101981332 101981738 -74992402 - HAL1 LINE L1 -446 2061 1638 608 208 108 17 chrX 101981716 101981947 -74992193 - HAL1 LINE L1 -1077 1430 1179 * 240 111 0 0 chrX 101982072 101982108 -74992032 + (T)n Simple_repeat Simple_repeat 1 36 0 993 286 54 45 chrX 101982828 101983276 -74990864 - HAL1 LINE L1 -1442 1065 614 180 97 0 0 chrX 101983390 101983421 -74990719 - MIR SINE MIR 0 262 232 192 77 0 0 chrX 101983452 101983478 -74990662 + (T)n Simple_repeat Simple_repeat 1 26 0 2405 74 7 0 chrX 101983516 101983812 -74990328 - AluY SINE Alu -13 298 1 465 268 16 0 chrX 101983821 101983948 -74990192 + L1ME LINE L1 5695 5823 -298 613 181 226 45 chrX 101984159 101984336 -74989804 + MER63A DNA MER1_type 1 209 -1 2129 130 0 3 chrX 101985293 101985585 -74988555 + AluSq SINE Alu 1 291 -22 288 0 0 0 chrX 101986423 101986455 -74987685 + (TG)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chrX 101988333 101988357 -74985783 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 279 104 0 0 chrX 101988356 101988404 -74985736 + (CA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chrX 101989709 101989732 -74984408 + AT_rich Low_complexity Low_complexity 1 23 0 1799 191 16 32 chrX 101989732 101990103 -74984037 - MSTB2 LTR MaLR -59 398 34 267 315 23 17 chrX 101991553 101991675 -74982465 + MIR SINE MIR 41 160 -62 * 284 257 26 118 chrX 101991659 101991811 -74982329 + MIR SINE MIR 17 154 -108 216 195 0 0 chrX 101991851 101991892 -74982248 + L2 LINE L2 3273 3313 0 2132 107 0 31 chrX 101992550 101992867 -74981273 + AluY SINE Alu 1 307 -4 2028 115 28 0 chrX 101993308 101993595 -74980545 + AluSg SINE Alu 1 295 -15 509 313 17 6 chrX 101994581 101994760 -74979380 + MIR SINE MIR 9 189 -73 27 29 0 0 chrX 101994810 101994844 -74979296 + AT_rich Low_complexity Low_complexity 1 34 0 1522 161 95 10 chrX 101996340 101996596 -74977544 - MER58B DNA MER1_type -2085 335 48 219 36 0 0 chrX 101996596 101996624 -74977516 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1522 161 95 10 chrX 101996624 101996671 -74977469 - MER58B DNA MER1_type -2372 48 6 2216 299 74 52 chrX 101996827 101998257 -74975883 - L2 LINE L2 -5 3308 1857 2305 97 10 0 chrX 101998434 101998733 -74975407 - AluSx SINE Alu -8 304 3 513 245 90 32 chrX 101998771 101998959 -74975181 - L2 LINE L2 0 3313 3115 881 252 59 28 chrX 101998960 101999346 -74974794 - MLT1J2 LTR MaLR -3 447 14 222 150 0 0 chrX 101999377 101999417 -74974723 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2341 101 3 0 chrX 101999420 101999728 -74974412 - AluSc SINE Alu 0 309 1 510 345 31 14 chrX 101999757 101999980 -74974160 - L2 LINE L2 -219 3053 2827 781 224 50 15 chrX 102000540 102000741 -74973399 - MIR SINE MIR -35 227 20 311 291 117 10 chrX 102000779 102000882 -74973258 - L2 LINE L2 -6 3266 3153 1073 159 25 111 chrX 102000890 102001236 -74972904 + MER58 DNA MER1_type 26 2420 0 11144 25 0 0 chrX 102001251 102002559 -74971581 - L1P LINE L1 -2211 3935 2628 449 271 88 17 chrX 102002615 102002796 -74971344 + MIR SINE MIR 19 212 -50 8763 110 40 7 chrX 102002837 102004097 -74970043 + HSMAR2 DNA Mariner 1 1302 0 235 310 0 28 chrX 102004153 102004224 -74969916 - L2 LINE L2 -195 3077 3009 * 738 317 4 25 chrX 102004216 102004456 -74969684 + MIR SINE MIR 28 262 0 526 264 78 18 chrX 102004522 102004689 -74969451 + MIR SINE MIR 86 262 0 191 174 65 0 chrX 102004691 102004737 -74969403 + L2 LINE L2 3218 3266 -6 413 211 11 11 chrX 102005899 102005994 -74968146 + MIR SINE MIR 168 262 0 331 250 19 48 chrX 102006317 102006421 -74967719 + MER102b DNA MER1_type 40 140 -201 1988 99 56 26 chrX 102006424 102006575 -74967565 - AluY SINE Alu 0 311 166 1556 139 83 109 chrX 102006575 102007035 -74967105 - LTR7 LTR ERV1 -2 448 1 1988 99 56 26 chrX 102007035 102007185 -74966955 - AluY SINE Alu -145 166 1 392 237 53 30 chrX 102007210 102007341 -74966799 + MER102b DNA MER1_type 163 296 -45 202 209 23 0 chrX 102007405 102007448 -74966692 + CT-rich Low_complexity Low_complexity 2 45 0 250 0 100 0 chrX 102007452 102007492 -74966648 + A-rich Low_complexity Low_complexity 2 45 0 1960 120 7 0 chrX 102007712 102008021 -74966119 + AluSc SINE Alu 15 325 0 1143 161 0 0 chrX 102008030 102008192 -74965948 + FAM SINE Alu 4 165 -10 739 258 147 4 chrX 102008675 102008900 -74965240 - MIR SINE MIR 0 262 6 768 181 17 28 chrX 102008903 102009080 -74965060 + MER5A DNA MER1_type 10 184 -5 2169 96 10 14 chrX 102009320 102009612 -74964528 - AluSc SINE Alu -18 291 1 274 333 12 0 chrX 102009705 102009789 -74964351 + MER81 DNA DNA 2 86 -28 428 330 0 0 chrX 102009791 102009894 -74964246 + MER81 DNA DNA 12 114 0 2251 108 0 7 chrX 102010015 102010321 -74963819 + AluSx SINE Alu 1 304 -8 406 221 106 89 chrX 102010504 102010853 -74963287 + L1ME4a LINE L1 5766 6120 -1 3745 97 34 0 chrX 102012009 102012506 -74961634 - MER75 DNA T2_type 0 514 1 780 244 156 0 chrX 102013480 102013685 -74960455 + MIR SINE MIR 26 262 0 1803 119 17 31 chrX 102014344 102014461 -74959679 + L1MB4 LINE L1 5891 6008 -172 2298 108 0 0 chrX 102014461 102014767 -74959373 - AluSx SINE Alu -6 306 1 1803 119 17 31 chrX 102014767 102014943 -74959197 + L1MB4 LINE L1 6008 6180 0 248 171 0 0 chrX 102015102 102015137 -74959003 + Alu SINE Alu 23 57 -245 2491 86 0 0 chrX 102015239 102015552 -74958588 - AluSq SINE Alu 0 313 1 658 216 16 22 chrX 102015583 102015773 -74958367 + L1MD1 LINE L1 6068 6234 -8 288 0 0 0 chrX 102016401 102016433 -74957707 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 324 70 0 0 chrX 102017472 102017515 -74956625 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2546 61 0 0 chrX 102017581 102017892 -74956248 + AluY SINE Alu 1 311 0 366 278 85 60 chrX 102018641 102018972 -74955168 - L1ME4a LINE L1 -1 6120 5782 1065 229 42 0 chrX 102019047 102019287 -74954853 - MIR SINE MIR 0 262 13 2230 92 14 3 chrX 102022966 102023261 -74950879 - AluSq SINE Alu -13 300 3 1352 77 0 0 chrX 102023293 102023461 -74950679 - L1PA8 LINE L1 -5 6167 6000 278 242 30 0 chrX 102023888 102023954 -74950186 - L2 LINE L2 0 3272 3205 490 271 137 80 chrX 102024519 102024907 -74949233 - MLT1K LTR MaLR -3 585 176 1368 177 68 4 chrX 102024937 102025186 -74948954 + AluJo SINE Alu 27 291 -21 31 0 0 0 chrX 102025186 102025217 -74948923 + AT_rich Low_complexity Low_complexity 1 31 0 2377 79 0 3 chrX 102025355 102025645 -74948495 - AluSc SINE Alu -20 289 1 4060 155 35 94 chrX 102025665 102026441 -74947699 - L1MB7 LINE L1 -22 6162 5470 2283 92 24 0 chrX 102026441 102026736 -74947404 - AluSp SINE Alu -11 302 1 4060 155 35 94 chrX 102026736 102027294 -74946846 - L1MB7 LINE L1 -714 5470 4881 2047 134 7 0 chrX 102027315 102027605 -74946535 - AluSp SINE Alu -21 292 1 2101 129 0 0 chrX 102027638 102027924 -74946216 + AluSx SINE Alu 1 286 -26 487 291 99 0 chrX 102028319 102028470 -74945670 + MIR SINE MIR 2 167 -95 301 277 24 0 chrX 102028558 102028641 -74945499 + L1MC4 LINE L1 6617 6701 -1341 183 229 0 0 chrX 102028651 102028712 -74945428 + (TATG)n Simple_repeat Simple_repeat 4 64 0 264 236 0 0 chrX 102028713 102028768 -74945372 - L1MC4 LINE L1 -1340 6702 6648 2830 213 24 10 chrX 102028805 102029430 -74944710 - L1MC4 LINE L1 -129 7913 7280 2333 104 3 0 chrX 102029488 102029796 -74944344 + AluSp SINE Alu 3 311 -2 206 333 0 0 chrX 102029797 102029854 -74944286 + MIR SINE MIR 205 261 -1 1185 249 54 27 chrX 102030431 102030873 -74943267 - L1M4 LINE L1 -2033 4113 3660 972 243 169 67 chrX 102031209 102031807 -74942333 + HAL1 LINE L1 1470 2128 -379 579 228 80 51 chrX 102031840 102032077 -74942063 + HAL1 LINE L1 2229 2472 -35 372 176 12 0 chrX 102032079 102032164 -74941976 - L1MC4 LINE L1 -958 7084 6999 * 5060 162 52 30 chrX 102032160 102032229 -74941911 - L1MD1 LINE L1 0 6636 6570 2349 100 0 0 chrX 102032229 102032538 -74941602 + AluY SINE Alu 1 309 -2 5060 162 52 30 chrX 102032538 102033657 -74940483 - L1MD1 LINE L1 -66 6570 5425 616 169 92 0 chrX 102033665 102033795 -74940345 - L1MD1 LINE L1 -4291 2249 2108 2104 127 0 0 chrX 102033833 102034117 -74940023 - AluSx SINE Alu -28 284 1 1159 52 0 0 chrX 102034117 102034251 -74939889 - AluY SINE Alu -177 134 1 267 31 0 0 chrX 102034552 102034584 -74939556 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2030 157 47 0 chrX 102034765 102035109 -74939031 - L1PA16 LINE L1 -1 6165 5806 842 184 22 16 chrX 102035111 102035296 -74938844 - L1MD1 LINE L1 -4426 2114 1929 386 146 214 0 chrX 102035328 102035431 -74938709 - L1MD1 LINE L1 -5205 1335 1211 1305 176 50 42 chrX 102035432 102035693 -74938447 - AluJo SINE Alu -47 265 3 3975 208 109 39 chrX 102035694 102035863 -74938277 - L1MDa LINE L1 -4600 1940 1784 2588 55 0 3 chrX 102035863 102036172 -74937968 - AluY SINE Alu -3 308 1 3975 208 109 39 chrX 102036172 102037678 -74936462 - L1MDa LINE L1 -4756 1784 1 423 0 0 0 chrX 102037697 102037744 -74936396 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 258 105 0 0 chrX 102039480 102039518 -74934622 + (ATG)n Simple_repeat Simple_repeat 3 40 0 2110 124 0 0 chrX 102039521 102039804 -74934336 - AluSq SINE Alu -30 283 1 196 256 64 13 chrX 102041066 102041144 -74932996 - L2 LINE L2 -3222 92 11 2285 90 14 0 chrX 102041189 102041479 -74932661 + AluSq SINE Alu 1 294 -19 1167 88 19 79 chrX 102041479 102041616 -74932524 - L1MB2 LINE L1 -7 6164 6041 2418 90 6 0 chrX 102041616 102041927 -74932213 + AluSp SINE Alu 1 313 0 1167 88 19 79 chrX 102041927 102041997 -74932143 - L1MB2 LINE L1 -130 6041 5968 180 97 0 0 chrX 102042074 102042105 -74932035 + (TTG)n Simple_repeat Simple_repeat 2 32 0 28 71 0 0 chrX 102092324 102092380 -74881760 + AT_rich Low_complexity Low_complexity 1 56 0 243 217 0 0 chrX 102092800 102092846 -74881294 + MIR3 SINE MIR 118 163 -45 472 224 91 42 chrX 102092846 102093011 -74881129 - MIR SINE MIR -2 260 88 449 203 97 16 chrX 102094355 102094491 -74879649 + MIR SINE MIR 25 164 -62 4873 165 70 16 chrX 102095737 102096331 -74877809 - L1MD2 LINE L1 -13 6346 5785 213 39 0 0 chrX 102096331 102096357 -74877783 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4873 165 70 16 chrX 102096357 102096779 -74877361 - L1MD2 LINE L1 -574 5785 5254 2316 63 17 30 chrX 102096779 102097081 -74877059 - AluY SINE Alu -13 298 1 4873 165 70 16 chrX 102097081 102097262 -74876878 - L1MD2 LINE L1 -1105 5254 5084 21 36 0 0 chrX 102097491 102097519 -74876621 + AT_rich Low_complexity Low_complexity 1 28 0 887 191 88 0 chrX 102098064 102098268 -74875872 + MER58A DNA MER1_type 1 222 -2 477 0 0 0 chrX 102098299 102098352 -74875788 + (CA)n Simple_repeat Simple_repeat 2 54 0 24 53 0 0 chrX 102098907 102098945 -74875195 + AT_rich Low_complexity Low_complexity 1 38 0 2009 147 16 0 chrX 102098993 102099118 -74875022 + AluJo SINE Alu 1 122 -190 210 45 68 0 chrX 102099118 102099162 -74874978 + (CAA)n Simple_repeat Simple_repeat 2 48 0 2009 147 16 0 chrX 102099162 102099342 -74874798 + AluJo SINE Alu 122 311 -1 2266 94 0 10 chrX 102099549 102099872 -74874268 - AluSq SINE Alu 0 320 1 456 193 19 62 chrX 102099955 102100116 -74874024 + L1MC5 LINE L1 7724 7877 -84 1964 62 90 4 chrX 102100239 102100524 -74873616 - AluY SINE Alu 0 312 6 1788 170 11 3 chrX 102100636 102100949 -74873191 + AluJo SINE Alu 6 320 0 1820 166 0 41 chrX 102100953 102101078 -74873062 + AluJb SINE Alu 1 130 -182 2310 109 0 0 chrX 102101078 102101380 -74872760 - AluSx SINE Alu -10 302 1 1820 166 0 41 chrX 102101380 102101568 -74872572 + AluJb SINE Alu 130 301 -11 961 191 0 0 chrX 102101568 102101741 -74872399 + AluJb SINE Alu 134 306 -6 590 267 137 62 chrX 102101931 102102508 -74871632 + L1MC4a LINE L1 5255 5874 -1934 21 0 0 0 chrX 102102703 102102724 -74871416 + AT_rich Low_complexity Low_complexity 1 21 0 421 270 38 33 chrX 102102978 102103189 -74870951 - L1ME4a LINE L1 -58 6063 5852 2381 103 0 0 chrX 102104248 102104560 -74869580 - AluSx SINE Alu 0 312 1 2009 111 20 34 chrX 102105674 102105972 -74868168 - AluSx SINE Alu -18 294 1 2289 91 3 25 chrX 102105986 102106305 -74867835 - AluSp SINE Alu 0 313 2 1743 186 23 3 chrX 102107231 102107537 -74866603 - AluJb SINE Alu 0 312 1 1219 122 0 35 chrX 102108044 102108241 -74865899 + MER30B DNA MER1_type 1 190 0 2192 108 0 3 chrX 102108488 102108785 -74865355 - AluSq SINE Alu -5 308 13 1854 127 69 4 chrX 102110377 102110653 -74863487 - AluSx SINE Alu -18 294 1 556 196 190 16 chrX 102110659 102110843 -74863297 - L1MD3 LINE L1 -26 7969 7754 555 119 0 12 chrX 102110958 102111042 -74863098 - AluJ/FLAM SINE Alu -224 88 6 5520 99 21 48 chrX 102111129 102112082 -74862058 - Tigger3(Golem) DNA MER2_type -1 3028 2102 580 140 56 0 chrX 102112105 102112212 -74861928 - Tigger3(Golem) DNA MER2_type -2916 113 1 235 214 0 48 chrX 102112397 102112481 -74861659 - MER116 DNA Mariner 0 80 1 428 228 9 0 chrX 102112909 102113023 -74861117 + CT-rich Low_complexity Low_complexity 2 116 0 1556 180 44 0 chrX 102113023 102113317 -74860823 - AluJb SINE Alu -5 307 1 1784 164 0 10 chrX 102113610 102113902 -74860238 + AluJo SINE Alu 1 289 -23 784 308 76 43 chrX 102114069 102114465 -74859675 - L2 LINE L2 -5 3267 2859 612 260 36 36 chrX 102114460 102114656 -74859484 - MIR SINE MIR -65 197 2 * 1591 181 13 32 chrX 102114999 102115314 -74858826 + AluJo SINE Alu 1 309 -3 2170 85 7 0 chrX 102115882 102116185 -74857955 - AluSp SINE Alu 0 305 1 1427 126 35 9 chrX 102117093 102117323 -74856817 - MER46A DNA MER2_type 0 236 1 236 184 104 88 chrX 102117687 102117768 -74856372 - L1ME4a LINE L1 -11 6110 6025 2025 137 0 3 chrX 102117768 102118061 -74856079 + AluJb SINE Alu 5 296 -16 236 184 104 88 chrX 102118061 102118104 -74856036 - L1ME4a LINE L1 -96 6025 5984 258 277 94 25 chrX 102118219 102118378 -74855762 - L1ME4a LINE L1 -304 5817 5648 672 161 34 0 chrX 102118378 102118496 -74855644 + MER1B DNA MER1_type 2 123 -174 270 298 67 45 chrX 102118525 102118703 -74855437 - L1ME4a LINE L1 -465 5656 5475 2287 80 3 7 chrX 102120013 102120300 -74853840 + AluSp SINE Alu 1 286 -27 2096 189 33 33 chrX 102120884 102121047 -74853093 - L1MA10 LINE L1 0 6334 6172 198 0 0 0 chrX 102121047 102121069 -74853071 + (TG)n Simple_repeat Simple_repeat 1 22 0 2096 189 33 33 chrX 102121069 102121392 -74852748 - L1MA10 LINE L1 -161 6173 5848 321 298 136 39 chrX 102121958 102122078 -74852062 + L1ME LINE L1 5259 5366 -818 2052 106 60 0 chrX 102122078 102122360 -74851780 - AluSx SINE Alu -13 299 1 321 298 136 39 chrX 102122360 102122548 -74851592 + L1ME LINE L1 5366 5597 -587 439 238 16 8 chrX 102122548 102122670 -74851470 - L1MD3 LINE L1 -24 7971 7849 * 3065 190 47 48 chrX 102122666 102123480 -74850660 - L1MC4a LINE L1 -354 7454 6642 268 226 12 24 chrX 102123606 102123690 -74850450 + L1ME LINE L1 5713 5795 -367 1921 90 0 53 chrX 102123767 102124089 -74850051 - AluSq SINE Alu -3 310 6 21 0 0 0 chrX 102124099 102124120 -74850020 + AT_rich Low_complexity Low_complexity 1 21 0 289 208 30 50 chrX 102125482 102125583 -74848557 + MIR3 SINE MIR 110 208 0 439 239 114 57 chrX 102126149 102126325 -74847815 + MIR3 SINE MIR 21 206 -2 254 233 0 17 chrX 102126327 102126387 -74847753 + (TA)n Simple_repeat Simple_repeat 2 60 0 2078 68 0 0 chrX 102126651 102126901 -74847239 + AluY SINE Alu 1 250 -61 2330 95 0 0 chrX 102127347 102127643 -74846497 - AluSg SINE Alu -14 296 1 2009 126 0 23 chrX 102127848 102128158 -74845982 - AluSx SINE Alu -9 303 1 2197 104 27 0 chrX 102128171 102128470 -74845670 - AluSg SINE Alu -3 307 1 27 62 0 0 chrX 102128599 102128647 -74845493 + AT_rich Low_complexity Low_complexity 1 48 0 278 219 73 0 chrX 102128698 102128780 -74845360 - HAL1b LINE L1 -68 1280 1193 1844 142 60 0 chrX 102129039 102129321 -74844819 - AluSx SINE Alu -13 299 1 28 48 0 0 chrX 102130001 102130043 -74844097 + AT_rich Low_complexity Low_complexity 1 42 0 1785 181 0 7 chrX 102131331 102131635 -74842505 - AluJb SINE Alu 0 312 11 364 289 33 25 chrX 102132541 102132662 -74841478 + MIR SINE MIR 33 154 -108 1708 99 80 4 chrX 102132681 102132970 -74841170 - AluSx SINE Alu 0 309 1 2173 108 0 17 chrX 102133041 102133336 -74840804 - AluSg SINE Alu -15 295 6 190 246 77 31 chrX 102133621 102133686 -74840454 + MER5C DNA MER1_type 18 85 -239 352 196 113 52 chrX 102133946 102134043 -74840097 - MIR SINE MIR -55 153 51 739 248 154 5 chrX 102137896 102138110 -74836030 + MIR SINE MIR 17 262 0 5768 234 127 29 chrX 102138594 102140713 -74833427 - L2 LINE L2 0 3313 1003 268 243 27 40 chrX 102140717 102140791 -74833349 - MIR SINE MIR -79 183 111 2742 65 3 0 chrX 102140792 102141144 -74832996 - L1PA7 LINE L1 0 6154 5802 363 78 0 0 chrX 102141723 102141774 -74832366 + (TG)n Simple_repeat Simple_repeat 2 52 0 528 231 98 13 chrX 102142033 102142258 -74831882 + MER20B DNA MER1_type 540 783 0 218 170 43 0 chrX 102142539 102142586 -74831554 - MIR3 SINE MIR -9 199 151 371 174 109 33 chrX 102142769 102142861 -74831279 - MIR SINE MIR -90 118 20 1923 165 0 9 chrX 102143134 102143449 -74830691 + AluJb SINE Alu 1 312 0 246 308 77 59 chrX 102143628 102143849 -74830291 + L2 LINE L2 2866 3090 -182 205 28 0 56 chrX 102144791 102144827 -74829313 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 180 217 65 22 chrX 102146327 102146373 -74827767 + L2 LINE L2 3220 3267 -5 778 188 120 57 chrX 102148253 102148612 -74825528 - LTR40b LTR ERVL 0 462 1 399 319 134 13 chrX 102149326 102149483 -74824657 + MER5B DNA MER1_type 1 176 -2 246 160 60 0 chrX 102149484 102149534 -74824606 - MIR3 SINE MIR -48 160 108 1491 207 0 0 chrX 102149720 102149981 -74824159 - AluJo SINE Alu -51 261 1 27 22 0 22 chrX 102150724 102150741 -74823399 + AT_rich Low_complexity Low_complexity 1 17 -27 2062 107 45 7 chrX 102150741 102151032 -74823108 - AluSx SINE Alu -10 302 1 27 22 0 22 chrX 102151032 102151059 -74823081 + AT_rich Low_complexity Low_complexity 17 44 0 760 214 59 0 chrX 102151217 102151267 -74822873 - MER3 DNA MER1_type -2 207 161 2527 37 0 10 chrX 102151267 102151564 -74822576 + AluY SINE Alu 1 294 -17 760 214 59 0 chrX 102151564 102151700 -74822440 - MER3 DNA MER1_type -48 161 10 391 226 7 96 chrX 102152288 102152434 -74821706 - L1ME3 LINE L1 -30 6132 6000 261 304 0 49 chrX 102154418 102154520 -74819620 - MIR3 SINE MIR -25 183 87 451 273 153 79 chrX 102155086 102155302 -74818838 - MIR SINE MIR -21 241 10 661 304 73 58 chrX 102155460 102155841 -74818299 + LTR33 LTR ERVL 34 420 -101 10185 60 6 80 chrX 102156432 102157928 -74816212 - SVA Other Other 0 1386 1 2402 81 0 0 chrX 102157929 102158224 -74815916 - AluSg SINE Alu -15 295 1 2355 77 3 0 chrX 102158837 102159134 -74815006 + AluY SINE Alu 1 298 -13 21 36 0 0 chrX 102159708 102159736 -74814404 + AT_rich Low_complexity Low_complexity 1 28 0 2353 82 17 3 chrX 102160622 102160915 -74813225 - AluSq SINE Alu -16 297 1 810 239 96 0 chrX 102161119 102161316 -74812824 - MER20B DNA MER1_type -3 216 1 2258 113 0 0 chrX 102161603 102161896 -74812244 - AluSx SINE Alu -19 293 1 943 230 14 19 chrX 102162529 102162742 -74811398 - MIR SINE MIR 0 262 51 570 253 68 14 chrX 102165425 102165571 -74808569 + MIR SINE MIR 88 241 -21 300 244 193 8 chrX 102166441 102166560 -74807580 - MIR SINE MIR -94 168 28 21 57 0 0 chrX 102166570 102166605 -74807535 + AT_rich Low_complexity Low_complexity 1 35 0 435 33 0 33 chrX 102166703 102166764 -74807376 - MADE1 DNA Mariner -21 59 1 192 320 60 30 chrX 102167237 102167337 -74806803 - MIR SINE MIR -113 149 47 4662 196 18 7 chrX 102167426 102168562 -74805578 - L1MB2 LINE L1 -3 6168 5016 324 95 238 0 chrX 102168562 102168625 -74805515 - MADE1 DNA Mariner -2 78 1 4662 196 18 7 chrX 102168625 102168876 -74805264 - L1MB2 LINE L1 -1155 5016 4769 264 339 0 9 chrX 102169311 102169423 -74804717 - L3 LINE CR1 -12 1565 1455 885 327 120 38 chrX 102169611 102170462 -74803678 - L2 LINE L2 -36 3236 2262 7086 35 0 3 chrX 102170462 102171311 -74802829 + L1PA5 LINE L1 5306 6151 -3 885 327 120 38 chrX 102171311 102171634 -74802506 - L2 LINE L2 -1010 2262 1967 4011 245 128 43 chrX 102171788 102174016 -74800124 - HAL1 LINE L1 0 2507 92 268 211 0 0 chrX 102174474 102174526 -74799614 - L1ME LINE L1 -456 5665 5614 23 33 0 0 chrX 102174526 102174556 -74799584 + AT_rich Low_complexity Low_complexity 1 30 0 6514 24 0 6 chrX 102174556 102175353 -74798787 - L1PA3 LINE L1 0 6155 5364 234 289 26 53 chrX 102175351 102175465 -74798675 - L1ME LINE L1 -503 5618 5508 * 325 231 231 39 chrX 102177664 102177820 -74796320 - L2 LINE L2 -51 3262 3077 40471 36 22 2 chrX 102177836 102183862 -74790278 - L1PA3 LINE L1 0 6155 1 341 328 120 0 chrX 102183876 102184001 -74790139 - L2 LINE L2 -253 3060 2921 195 42 0 0 chrX 102184004 102184028 -74790112 + (TG)n Simple_repeat Simple_repeat 1 24 0 233 288 27 0 chrX 102184252 102184325 -74789815 + CT-rich Low_complexity Low_complexity 3 77 0 207 200 0 0 chrX 102185915 102185950 -74788190 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 622 198 89 32 chrX 102187552 102187709 -74786431 + MIR SINE MIR 59 224 -38 264 233 156 22 chrX 102187847 102187937 -74786203 + MIR SINE MIR 33 134 -74 207 0 0 0 chrX 102187945 102187968 -74786172 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2016 138 0 31 chrX 102188194 102188514 -74785626 - AluJo SINE Alu -2 310 1 242 202 155 0 chrX 102188644 102188728 -74785412 + MER112 DNA MER1_type 122 218 -42 536 232 0 0 chrX 102188736 102188848 -74785292 + MER3 DNA MER1_type 2 113 -96 825 167 0 0 chrX 102188850 102188982 -74785158 + FLAM_C SINE Alu 1 132 -1 505 204 56 31 chrX 102189130 102189292 -74784848 - HAL1 LINE L1 -50 2457 2292 1215 235 208 12 chrX 102189310 102189872 -74784268 - HAL1 LINE L1 -303 2204 1533 5793 45 15 0 chrX 102190417 102191132 -74783008 + L1PA8 LINE L1 5447 6172 0 2247 93 10 0 chrX 102191134 102191424 -74782716 + AluY SINE Alu 1 293 -18 289 173 0 0 chrX 102191757 102191809 -74782331 - MER5B DNA MER1_type 0 178 127 2695 103 13 24 chrX 102192048 102192427 -74781713 - THE1C LTR MaLR 0 375 1 492 304 0 0 chrX 102194331 102194443 -74779697 + L2 LINE L2 3161 3272 0 281 337 0 22 chrX 102194967 102195056 -74779084 + L2 LINE L2 3008 3094 -178 438 222 32 40 chrX 102195086 102195212 -74778928 - MIR SINE MIR -4 258 134 574 192 10 10 chrX 102195215 102195319 -74778821 + L1PA8A LINE L1 6010 6113 -18 427 262 18 4 chrX 102195803 102195920 -74778220 + MIR3 SINE MIR 39 159 -49 862 238 5 16 chrX 102196001 102196194 -74777946 + MIR SINE MIR 51 241 -21 2546 173 50 102 chrX 102196403 102197079 -74777061 + L1ME2 LINE L1 5514 6154 -10 351 215 65 32 chrX 102197454 102197547 -74776593 - L2 LINE L2 -15 3257 3162 225 301 97 11 chrX 102197700 102197793 -74776347 - L2 LINE L2 -495 2819 2719 287 195 171 12 chrX 102198152 102198234 -74775906 + MIR SINE MIR 156 250 -12 344 309 9 55 chrX 102198755 102198865 -74775275 + L2 LINE L2 3155 3259 -13 243 0 0 0 chrX 102198865 102198892 -74775248 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 331 242 33 8 chrX 102199664 102199784 -74774356 + L1ME LINE L1 5696 5818 -303 227 0 0 83 chrX 102200088 102200124 -74774016 + (GA)n Simple_repeat Simple_repeat 1 33 0 748 293 93 33 chrX 102200689 102201140 -74773000 - L2 LINE L2 -1057 2257 1780 297 197 113 0 chrX 102201197 102201268 -74772872 + MIR SINE MIR 99 177 -85 2122 145 33 18 chrX 102201383 102201715 -74772425 - MER1B DNA MER1_type 0 337 1 230 250 0 42 chrX 102203155 102203238 -74770902 + C-rich Low_complexity Low_complexity 1 79 0 2078 118 0 44 chrX 102205204 102205519 -74768621 - AluSx SINE Alu -11 301 1 2008 94 10 37 chrX 102206265 102206563 -74767577 - AluSx SINE Alu -22 290 1 410 306 49 35 chrX 102207620 102207764 -74766376 + MIR3 SINE MIR 17 162 -46 473 179 0 38 chrX 102208620 102208726 -74765414 - L1MB2 LINE L1 -2 6169 6068 508 236 181 6 chrX 102210184 102210366 -74763774 + MIR SINE MIR 33 246 -16 2173 250 45 43 chrX 102210460 102211195 -74762945 + L2 LINE L2 1653 2388 -926 1563 230 26 55 chrX 102211199 102211616 -74762524 + MER90 LTR ERV1 1 405 -209 1601 261 24 57 chrX 102211637 102212472 -74761668 + L2 LINE L2 2422 3225 -88 22 0 0 0 chrX 102212476 102212498 -74761642 + AT_rich Low_complexity Low_complexity 1 22 0 1568 237 95 7 chrX 102212536 102212987 -74761153 - L1ME2 LINE L1 -10 6154 5664 264 345 94 20 chrX 102213310 102213609 -74760531 + L2 LINE L2 1254 1574 -1740 262 246 0 0 chrX 102213640 102213697 -74760443 - L2 LINE L2 -15 3257 3201 627 262 61 12 chrX 102213804 102214011 -74760129 - MIR SINE MIR -48 214 3 6711 23 0 1 chrX 102214058 102214784 -74759356 - L1PA5 LINE L1 -13 6141 5417 204 340 60 10 chrX 102214954 102215054 -74759086 - MER5A DNA MER1_type 0 189 85 * 324 213 0 13 chrX 102214981 102215056 -74759084 + MER5A DNA MER1_type 44 117 -72 * 426 300 8 8 chrX 102215049 102215169 -74758971 - L2 LINE L2 -649 2665 2546 550 162 0 57 chrX 102215169 102215274 -74758866 - AluJb SINE Alu -5 307 209 861 117 15 0 chrX 102215279 102215416 -74758724 - L1MB4 LINE L1 0 6180 6042 807 191 0 0 chrX 102215558 102215689 -74758451 - FLAM_A SINE Alu -1 132 2 642 216 260 10 chrX 102215896 102216104 -74758036 - MIR SINE MIR -1 261 2 304 321 115 25 chrX 102216127 102216491 -74757649 - L2 LINE L2 -1141 2173 1777 560 232 145 43 chrX 102216548 102216755 -74757385 + MIR SINE MIR 23 250 -12 380 192 14 0 chrX 102218873 102218946 -74755194 + MER5B DNA MER1_type 76 149 -29 31704 96 9 14 chrX 102218977 102224727 -74749413 - L1PA7 LINE L1 -6 6463 722 302 314 158 51 chrX 102224735 102225247 -74748893 - L2 LINE L2 -1606 1708 1142 274 257 55 83 chrX 102225292 102225401 -74748739 + MIR3 SINE MIR 10 115 -93 365 230 113 26 chrX 102225551 102225778 -74748362 + L1MC/D LINE L1 5219 5471 -743 * 1307 176 67 10 chrX 102225741 102226044 -74748096 - L1MC3 LINE L1 -112 7883 7357 606 267 89 25 chrX 102227371 102227573 -74746567 - MIR SINE MIR 0 262 48 230 177 0 16 chrX 102228321 102228383 -74745757 + T-rich Low_complexity Low_complexity 5 65 0 1425 146 87 4 chrX 102228609 102229017 -74745123 + LTR54 LTR ERV1 8 510 0 348 64 0 0 chrX 102229021 102229068 -74745072 + (CA)n Simple_repeat Simple_repeat 2 48 0 799 301 75 37 chrX 102229400 102230300 -74743840 - L1MC4a LINE L1 -743 5403 5032 1457 162 123 81 chrX 102230593 102230638 -74743502 - L1MA7 LINE L1 0 6291 6249 3221 91 27 23 chrX 102230638 102231080 -74743060 - MLT2A1 LTR ERVL 0 444 1 1457 162 123 81 chrX 102231080 102231095 -74743045 - L1MA7 LINE L1 -42 6249 6236 2275 102 0 0 chrX 102231095 102231389 -74742751 - AluSg SINE Alu -16 294 1 2101 87 72 0 chrX 102231396 102231672 -74742468 - AluSx SINE Alu -16 296 1 1457 162 123 81 chrX 102231672 102231923 -74742217 - L1MA7 LINE L1 -60 6231 5946 270 0 0 0 chrX 102231923 102231953 -74742187 + (TG)n Simple_repeat Simple_repeat 1 30 0 1457 162 123 81 chrX 102231953 102232063 -74742077 - L1MA7 LINE L1 -345 5946 5842 415 311 52 55 chrX 102232116 102232441 -74741699 - L1 LINE L1 -2086 4060 3737 5656 67 0 0 chrX 102232473 102233143 -74740997 + L1PA8 LINE L1 5502 6171 -1 293 250 88 54 chrX 102233342 102233546 -74740594 - L1 LINE L1 -2677 3469 3259 2549 69 3 0 chrX 102233768 102234073 -74740067 - AluSp SINE Alu -7 306 1 190 186 0 34 chrX 102234725 102234784 -74739356 + CT-rich Low_complexity Low_complexity 2 58 0 992 223 11 11 chrX 102236308 102236496 -74737644 - MER5A DNA MER1_type -1 188 1 259 200 31 0 chrX 102237722 102237787 -74736353 - L1ME4a LINE L1 -93 6028 5962 1502 237 37 22 chrX 102239070 102239480 -74734660 + MER20B DNA MER1_type 221 636 -147 2508 119 8 3 chrX 102239577 102239930 -74734210 - THE1A LTR MaLR 0 355 1 2034 259 73 43 chrX 102240079 102241555 -74732585 - L1ME4a LINE L1 -233 5929 4413 5741 179 143 32 chrX 102241555 102243058 -74731082 + MER52A LTR ERV1 1 1755 0 1272 268 28 73 chrX 102243058 102243334 -74730806 - L1ME4a LINE L1 -1730 4416 4129 2108 128 13 3 chrX 102243334 102243638 -74730502 - AluSx SINE Alu -5 307 1 1272 268 28 73 chrX 102243638 102244318 -74729822 - L1ME4a LINE L1 -2017 4129 3503 240 255 0 21 chrX 102244367 102244461 -74729679 - L1MC4 LINE L1 -1337 6705 6614 446 226 20 0 chrX 102244475 102244577 -74729563 - L1ME3A LINE L1 -8 6162 6059 210 71 0 0 chrX 102245154 102245182 -74728958 + (CA)n Simple_repeat Simple_repeat 2 29 0 1827 201 38 5 chrX 102245289 102245707 -74728433 - L1ME3A LINE L1 -356 5828 5397 316 292 83 8 chrX 102245709 102245829 -74728311 - L1ME4a LINE L1 -3245 2901 2773 920 300 29 17 chrX 102245883 102246400 -74727740 - L1ME4a LINE L1 -3487 2659 2137 493 191 0 0 chrX 102246734 102246828 -74727312 + AluJ/FRAM SINE Alu 217 310 -2 512 219 29 9 chrX 102246920 102247025 -74727115 + MER5B DNA MER1_type 72 178 0 681 272 61 38 chrX 102247458 102247763 -74726377 + L1MEc LINE L1 1398 1715 -4681 2139 114 17 0 chrX 102247763 102248060 -74726080 + AluSx SINE Alu 1 302 -10 681 272 61 38 chrX 102248060 102248148 -74725992 + L1MEc LINE L1 1715 1800 -4596 518 193 108 121 chrX 102248341 102248564 -74725576 - MLT1J LTR MaLR -291 220 1 1111 279 66 43 chrX 102249860 102250220 -74723920 - L2 LINE L2 -135 3178 2796 2931 165 28 18 chrX 102250220 102250730 -74723410 + MLT2B2 LTR ERVL 1 515 0 1111 279 66 43 chrX 102250730 102250980 -74723160 - L2 LINE L2 -517 2796 2553 2657 226 38 9 chrX 102250983 102251617 -74722523 + MER82 DNA MER2_type 2 653 0 799 279 93 7 chrX 102251624 102251914 -74722226 - L2 LINE L2 -770 2544 2230 645 181 6 38 chrX 102251917 102252077 -74722063 - LTR7 LTR ERV1 0 450 296 842 115 0 14 chrX 102252335 102252474 -74721666 - LTR7 LTR ERV1 -313 137 1 1559 158 104 65 chrX 102252487 102252899 -74721241 - MSTB1 LTR MaLR -4 428 1 4951 250 43 55 chrX 102252899 102253048 -74721092 - MSTB1-int LTR MaLR 0 1651 1502 840 165 0 0 chrX 102253048 102253175 -74720965 + FLAM_C SINE Alu 1 127 -6 4951 250 43 55 chrX 102253175 102254695 -74719445 - MSTB1-int LTR MaLR -149 1502 1 1127 171 25 25 chrX 102254697 102254942 -74719198 - MSTB1 LTR MaLR -2 430 186 2299 104 0 0 chrX 102255749 102256048 -74718092 + AluSq SINE Alu 1 299 -14 626 221 168 26 chrX 102256482 102256708 -74717432 - LTR48 LTR ERV1 -526 261 4 411 256 0 0 chrX 102256813 102256903 -74717237 - LTR48-int LTR ERV1 -164 6167 6078 2286 50 4 0 chrX 102256923 102257235 -74716905 + AluY SINE Alu 1 313 0 487 257 46 33 chrX 102257257 102257409 -74716731 - LTR49-int LTR ERV1 -242 4694 4541 * 2258 133 29 5 chrX 102257405 102257790 -74716350 - LTR49-int LTR ERV1 -541 5790 5397 21 0 0 0 chrX 102257814 102257835 -74716305 + AT_rich Low_complexity Low_complexity 1 21 0 5546 206 59 80 chrX 102260323 102260444 -74713696 - LTR49-int LTR ERV1 -923 5408 5286 2011 145 7 13 chrX 102260444 102260747 -74713393 - AluJb SINE Alu -11 301 1 5546 206 59 80 chrX 102260747 102261688 -74712452 - LTR49-int LTR ERV1 -1045 5286 4326 1668 117 13 4 chrX 102261688 102261927 -74712213 - AluSx SINE Alu -13 299 59 5546 206 59 80 chrX 102261927 102265050 -74709090 - LTR49-int LTR ERV1 -2005 4326 751 1158 133 35 133 chrX 102265195 102265340 -74708800 - LTR49-int LTR ERV1 -3264 1616 1458 407 181 28 0 chrX 102265340 102265412 -74708728 - tRNA-Glu-GAG tRNA tRNA 0 75 2 1158 133 35 133 chrX 102265412 102265785 -74708355 - LTR49-int LTR ERV1 -3422 1458 842 758 147 46 86 chrX 102266935 102267132 -74707008 - MSTB1 LTR MaLR -243 189 1 343 282 25 106 chrX 102267428 102267673 -74706467 + L1ME LINE L1 4945 5169 -977 331 85 68 0 chrX 102267678 102267737 -74706403 - MLT2B1 LTR ERVL 0 520 458 304 54 95 0 chrX 102267737 102267811 -74706329 + (TAGA)n Simple_repeat Simple_repeat 1 81 0 1692 196 249 5 chrX 102267811 102268240 -74705900 - MLT2B1 LTR ERVL -20 534 1 230 255 68 21 chrX 102268245 102268437 -74705703 + L1ME LINE L1 5174 5374 -772 1730 259 118 18 chrX 102268462 102269353 -74704787 - L2 LINE L2 0 3313 2338 690 288 97 8 chrX 102269521 102269892 -74704248 + L1ME LINE L1 5401 5804 -317 216 220 40 0 chrX 102269925 102269975 -74704165 - MIR SINE MIR -27 235 184 229 167 83 0 chrX 102270016 102270064 -74704076 - L2 LINE L2 0 3313 3262 590 346 62 27 chrX 102270818 102271292 -74702848 - LTR16B LTR ERVL -3 461 1 324 287 23 0 chrX 102271626 102271713 -74702427 - L1MC4 LINE L1 -1339 6703 6615 329 231 22 44 chrX 102271715 102271806 -74702334 - L1MC4 LINE L1 -1340 6702 6614 578 246 81 1 chrX 102271928 102272072 -74702068 + MIR SINE MIR 31 182 -65 451 250 35 9 chrX 102272072 102272188 -74701952 - MIR SINE MIR -113 149 31 3890 94 20 2 chrX 102272557 102273101 -74701039 - MER41A LTR ERV1 0 554 1 12819 78 16 22 chrX 102273101 102275416 -74698724 - MER41A-int LTR ERV1 0 5946 2856 2573 76 48 20 chrX 102275403 102275796 -74698344 - MER41A-int LTR ERV1 -3000 2946 2543 * 1608 117 12 4 chrX 102275786 102276035 -74698105 - MER41A-int LTR ERV1 -4506 3031 2781 * 719 124 0 116 chrX 102276031 102276205 -74697935 - MER41A-int LTR ERV1 -4193 3225 2484 * 890 183 16 11 chrX 102276209 102276395 -74697745 - MER41A-int LTR ERV1 -4381 836 650 4253 114 28 5 chrX 102276396 102277070 -74697070 - MER41A-int LTR ERV1 -5256 690 1 3848 93 11 14 chrX 102277070 102277626 -74696514 - MER41A LTR ERV1 0 554 1 2324 68 3 0 chrX 102278301 102278593 -74695547 + AluY SINE Alu 1 293 -18 410 286 77 24 chrX 102279063 102279231 -74694909 - MIR SINE MIR -39 223 47 653 249 46 21 chrX 102279757 102279911 -74694229 - MER112 DNA MER1_type -8 252 88 333 47 0 0 chrX 102279911 102279954 -74694186 + (CA)n Simple_repeat Simple_repeat 2 44 0 653 249 46 21 chrX 102279954 102280040 -74694100 - MER112 DNA MER1_type -172 88 6 592 194 58 7 chrX 102280824 102280979 -74693161 - MER104 DNA Tc2 -16 164 2 1406 198 56 4 chrX 102281018 102281286 -74692854 - AluJo SINE Alu -30 282 1 7017 50 18 26 chrX 102281345 102283055 -74691085 - L1PA6 LINE L1 -1 6153 4450 2670 44 0 28 chrX 102283075 102283463 -74690677 - L1PA6 LINE L1 -2885 3261 2885 654 198 0 9 chrX 102287608 102287724 -74686416 - FLAM_A SINE Alu -18 115 1 2335 101 0 0 chrX 102287907 102288214 -74685926 + AluSg SINE Alu 4 310 0 6941 47 15 3 chrX 102288411 102289655 -74684485 + L1PA7 LINE L1 4866 6150 -4 225 269 202 19 chrX 102290148 102290252 -74683888 - MIR SINE MIR -136 126 4 270 0 0 0 chrX 102290940 102290970 -74683170 + (CA)n Simple_repeat Simple_repeat 2 31 0 499 223 234 32 chrX 102292255 102292443 -74681697 - MIR SINE MIR 0 262 37 274 336 34 46 chrX 102292801 102293039 -74681101 + L2 LINE L2 2205 2439 -875 507 346 0 0 chrX 102293053 102293186 -74680954 - L2 LINE L2 -4 3268 3136 238 106 43 0 chrX 102293257 102293304 -74680836 + CT-rich Low_complexity Low_complexity 2 50 0 1032 123 0 35 chrX 102293304 102293474 -74680666 - AluSg/x SINE Alu -15 297 134 228 241 26 0 chrX 102293506 102293622 -74680518 + CT-rich Low_complexity Low_complexity 1 119 0 482 266 106 16 chrX 102293828 102294016 -74680124 - MIR SINE MIR -52 210 6 227 323 0 0 chrX 102294059 102294124 -74680016 + L2 LINE L2 2993 3057 -215 670 309 46 0 chrX 102294549 102294743 -74679397 + MIR SINE MIR 1 203 -59 4434 157 72 8 chrX 102295158 102296082 -74678058 - L1MB7 LINE L1 -1 6183 5197 699 281 13 34 chrX 102296082 102296317 -74677823 - L1M4 LINE L1 -6297 245 16 455 190 11 0 chrX 102296352 102296449 -74677691 - L1M1 LINE L1 -566 5736 5634 * 2328 210 18 39 chrX 102296412 102296523 -74677617 + L1MA9 LINE L1 5675 5787 -525 225 0 0 0 chrX 102296523 102296548 -74677592 + (TG)n Simple_repeat Simple_repeat 2 26 0 2328 210 18 39 chrX 102296548 102297049 -74677091 + L1MA9 LINE L1 5787 6274 -38 383 231 92 23 chrX 102297890 102298063 -74676077 - L1M4 LINE L1 -3786 2360 2176 * 1371 202 52 93 chrX 102298058 102298352 -74675788 - L1ME3 LINE L1 0 6096 5826 1083 110 57 57 chrX 102298352 102298515 -74675625 - L1MA7 LINE L1 0 6291 6126 2168 101 0 52 chrX 102298515 102298823 -74675317 + AluSx SINE Alu 1 292 -20 1083 110 57 57 chrX 102298823 102298886 -74675254 - L1MA7 LINE L1 -164 6127 6065 1371 202 52 93 chrX 102298886 102299051 -74675089 - L1ME3 LINE L1 -270 5826 5656 1006 218 81 13 chrX 102299051 102299285 -74674855 - AluJo SINE Alu -14 298 49 1360 237 58 20 chrX 102299311 102299704 -74674436 - L1ME3 LINE L1 -465 5639 5232 423 120 11 22 chrX 102299791 102299883 -74674257 + (TA)n Simple_repeat Simple_repeat 2 92 0 3618 252 77 39 chrX 102299884 102300734 -74673406 - L1ME3 LINE L1 -905 5175 4359 1525 160 11 15 chrX 102300734 102300997 -74673143 - AluJo SINE Alu -36 276 15 3618 252 77 39 chrX 102300997 102301079 -74673061 - L1ME3 LINE L1 -1721 4359 4282 1642 191 3 33 chrX 102301079 102301382 -74672758 - AluJo SINE Alu -18 294 1 3618 252 77 39 chrX 102301382 102302006 -74672134 - L1ME3 LINE L1 -1798 4282 3559 877 293 88 30 chrX 102301994 102302754 -74671386 - L1ME3 LINE L1 -3948 2313 1510 * 248 51 0 26 chrX 102302755 102302794 -74671346 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 37128 33 2 0 chrX 102302794 102308054 -74666086 - L1PA3 LINE L1 -24 6131 865 2386 195 40 0 chrX 102308057 102308559 -74665581 - L1MB5 LINE L1 -8 6166 5645 856 210 28 9 chrX 102308559 102308773 -74665367 - L1MB5 LINE L1 -2443 3703 3486 13298 152 22 19 chrX 102308858 102310625 -74663515 - L1MA1 LINE L1 0 6302 4541 1894 174 0 3 chrX 102310625 102310936 -74663204 + AluJb SINE Alu 1 310 -2 13298 152 22 19 chrX 102310936 102311383 -74662757 - L1MA1 LINE L1 -1761 4541 4097 2218 117 0 0 chrX 102311383 102311682 -74662458 - AluSg1 SINE Alu -10 299 1 13298 152 22 19 chrX 102311682 102313191 -74660949 - L1MA1 LINE L1 -2205 4097 2569 1017 124 0 13 chrX 102313195 102313348 -74660792 - AluSq/x SINE Alu -161 151 1 602 283 66 37 chrX 102313400 102313832 -74660308 - L1ME3 LINE L1 -4810 1451 957 2453 155 11 20 chrX 102313832 102314270 -74659870 + Tigger2a DNA MER2_type 1 434 0 602 283 66 37 chrX 102314270 102314342 -74659798 - L1ME3 LINE L1 -5304 957 889 12436 208 46 30 chrX 102314381 102314418 -74659722 - L1MB2 LINE L1 -7 6400 6365 2096 106 0 7 chrX 102314418 102314700 -74659440 + AluSx SINE Alu 22 301 -11 12436 208 46 30 chrX 102314700 102315048 -74659092 - L1MB2 LINE L1 -42 6365 6024 3983 71 22 4 chrX 102315048 102315408 -74658732 - L1PB1 LINE L1 -1 6150 5775 180 0 0 0 chrX 102315408 102315428 -74658712 + (TA)n Simple_repeat Simple_repeat 2 21 0 3983 71 22 4 chrX 102315428 102315615 -74658525 - L1PB1 LINE L1 -376 5775 5593 12436 208 46 30 chrX 102315615 102320112 -74654028 - L1MB2 LINE L1 -383 6024 1602 462 18 0 0 chrX 102320112 102320167 -74653973 + (TG)n Simple_repeat Simple_repeat 2 56 0 1672 185 7 3 chrX 102320167 102320453 -74653687 - AluJb SINE Alu -25 287 1 12436 208 46 30 chrX 102320453 102320500 -74653640 - L1MB2 LINE L1 -4804 1603 1374 234 275 98 49 chrX 102320528 102320833 -74653307 - L1ME3 LINE L1 -5410 851 532 763 303 0 0 chrX 102321065 102321243 -74652897 + MER63A DNA MER1_type 33 210 0 295 290 24 40 chrX 102321248 102321372 -74652768 - L1ME3 LINE L1 -5626 444 323 233 273 27 45 chrX 102321537 102321647 -74652493 - L1ME3 LINE L1 -5937 133 26 358 246 79 69 chrX 102321667 102321870 -74652270 - L1MEc LINE L1 -4078 2318 2114 21 57 0 0 chrX 102321961 102321996 -74652144 + AT_rich Low_complexity Low_complexity 1 35 0 3332 159 5 35 chrX 102322256 102322334 -74651806 + MER7C DNA MER2_type 1 80 -2948 1751 163 17 20 chrX 102322334 102322635 -74651505 + AluJb SINE Alu 1 300 -12 3332 159 5 35 chrX 102322635 102323177 -74650963 + MER7C DNA MER2_type 80 602 0 1188 355 18 10 chrX 102323336 102323840 -74650300 + HERVL LTR ERVL 1495 2002 -3762 * 2123 317 87 12 chrX 102323838 102324717 -74649423 + HERVL LTR ERVL 2115 3058 -2706 1102 354 30 10 chrX 102324753 102325261 -74648879 + HERVL LTR ERVL 3098 3615 -2039 1149 196 102 92 chrX 102325261 102325653 -74648487 + MSTD LTR MaLR 1 396 0 5065 214 18 46 chrX 102325653 102326816 -74647324 + MSTD-int LTR MaLR 1 1067 -513 1417 135 17 127 chrX 102326819 102327181 -74646959 + LTR39 LTR ERV1 1 322 -461 944 195 15 31 chrX 102327228 102327423 -74646717 + LTR39 LTR ERV1 592 783 0 2842 209 49 6 chrX 102327424 102327959 -74646181 + MSTD-int LTR MaLR 1178 1735 0 695 213 0 16 chrX 102327973 102328100 -74646040 - FLAM_A SINE Alu -17 125 1 890 201 68 131 chrX 102328101 102328278 -74645862 + MSTD LTR MaLR 11 198 -198 1674 177 3 3 chrX 102328278 102328561 -74645579 + AluJb SINE Alu 7 289 -23 890 201 68 131 chrX 102328561 102328795 -74645345 + MSTD LTR MaLR 198 396 0 1856 279 43 21 chrX 102329013 102329572 -74644568 + HERVL LTR ERVL 3910 4480 -1284 5633 175 20 15 chrX 102329626 102330084 -74644056 + L1M1 LINE L1 22 476 -7089 3006 93 55 0 chrX 102330084 102330120 -74644020 - MLT2A1 LTR ERVL 0 444 411 219 36 0 0 chrX 102330120 102330148 -74643992 + (TA)n Simple_repeat Simple_repeat 2 29 0 3006 93 55 0 chrX 102330148 102330532 -74643608 - MLT2A1 LTR ERVL -33 411 1 5633 175 20 15 chrX 102330532 102331049 -74643091 + L1M1 LINE L1 476 1002 -6563 6993 128 7 21 chrX 102331096 102332784 -74641356 + L1MA2 LINE L1 4639 6304 0 1513 229 53 25 chrX 102332785 102333178 -74640962 + MLT2D LTR ERVL 11 414 0 715 301 62 46 chrX 102333179 102333798 -74640342 + HERVL LTR ERVL 4461 5101 -384 1165 289 80 48 chrX 102334246 102334744 -74639396 + LTR33 LTR ERVL 1 514 -7 268 311 115 33 chrX 102334776 102335020 -74639120 + L2 LINE L2 2148 2411 -903 238 264 46 58 chrX 102335239 102335326 -74638814 + MIR SINE MIR 1 86 -176 630 262 98 51 chrX 102335328 102335584 -74638556 - L2 LINE L2 0 3313 3046 278 306 0 0 chrX 102335582 102335654 -74638486 - L2 LINE L2 -1143 2171 2100 * 995 255 12 16 chrX 102335653 102335908 -74638232 - MIR SINE MIR 0 262 9 478 305 18 6 chrX 102335965 102336129 -74638011 + MIR SINE MIR 97 262 0 973 262 4 9 chrX 102336312 102336537 -74637603 - MER58A DNA MER1_type 0 224 1 940 214 270 17 chrX 102336765 102337124 -74637016 + MLT1J2 LTR MaLR 1 450 0 1796 139 70 25 chrX 102337265 102337624 -74636516 - THE1C LTR MaLR 0 375 1 7719 20 2 1 chrX 102337867 102338766 -74635374 + L1PA3 LINE L1 5256 6155 0 243 0 0 0 chrX 102338794 102338821 -74635319 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 325 218 9 21 chrX 102338848 102338965 -74635175 - L1ME LINE L1 -5171 899 795 289 203 0 16 chrX 102340048 102340112 -74634028 - LTR33A LTR ERVL 0 523 461 631 301 34 17 chrX 102340228 102340498 -74633642 - L1P3 LINE L1 -316 5805 5547 896 296 45 40 chrX 102341110 102341604 -74632536 + L1ME LINE L1 5329 5824 -297 538 274 82 23 chrX 102342108 102342327 -74631813 - MIR SINE MIR -12 250 19 708 303 64 24 chrX 102342823 102343074 -74631066 + MIR SINE MIR 2 262 0 973 235 10 0 chrX 102344126 102344330 -74629810 + MIR SINE MIR 13 218 -44 576 289 157 5 chrX 102344791 102344988 -74629152 + MIR SINE MIR 33 259 -3 291 305 30 30 chrX 102344986 102345117 -74629023 + MIR SINE MIR 100 230 -32 * 2298 132 94 136 chrX 102345121 102345865 -74628275 + L1MB7 LINE L1 5472 6184 0 974 108 5 32 chrX 102347428 102347613 -74626527 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 378 261 0 11 chrX 102348461 102348549 -74625591 - L2 LINE L2 -4 3309 3223 403 290 91 17 chrX 102348981 102349157 -74624983 - MIR3 SINE MIR 0 208 20 199 307 228 0 chrX 102349169 102349283 -74624857 - MIR SINE MIR -3 259 120 730 223 69 73 chrX 102349674 102349907 -74624233 + MIR SINE MIR 23 254 -8 830 312 67 86 chrX 102350870 102351543 -74622597 + L2 LINE L2 2082 2741 -573 405 238 0 0 chrX 102351649 102351750 -74622390 + (CATATA)n Simple_repeat Simple_repeat 2 102 0 474 18 0 0 chrX 102351751 102351806 -74622334 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 261 223 64 181 chrX 102351809 102352074 -74622066 + L2 LINE L2 2925 3158 -114 353 203 38 13 chrX 102352143 102352222 -74621918 - MIR SINE MIR -34 228 148 227 285 48 59 chrX 102352221 102352407 -74621733 - L2 LINE L2 -784 2530 2347 * 583 266 12 6 chrX 102354942 102355115 -74619025 - MER5B DNA MER1_type -4 174 1 514 315 16 0 chrX 102356925 102357052 -74617088 + MER91A DNA MER1_type 1 129 -67 711 324 5 14 chrX 102357496 102357718 -74616422 - MIR SINE MIR -2 260 41 1051 172 10 26 chrX 102357722 102357914 -74616226 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chrX 102359191 102359219 -74614921 + AT_rich Low_complexity Low_complexity 1 28 0 205 235 0 73 chrX 102359802 102359870 -74614270 + MIR3 SINE MIR 125 187 -21 308 325 162 32 chrX 102360141 102360295 -74613845 - L2 LINE L2 -3 3269 3096 1004 283 20 10 chrX 102360329 102360622 -74613518 - LTR16A LTR ERVL 0 450 155 502 269 31 0 chrX 102360623 102360753 -74613387 + MER63 DNA MER1_type 1 760 -76 247 308 68 27 chrX 102360811 102360957 -74613183 - LTR16A LTR ERVL -288 162 11 358 254 102 51 chrX 102361386 102361563 -74612577 - MARNA DNA Mariner -347 239 54 1243 156 4 50 chrX 102362181 102362419 -74611721 + MER46A DNA MER2_type 10 236 0 367 289 179 0 chrX 102362605 102362778 -74611362 - MIR SINE MIR -1 261 58 248 333 8 16 chrX 102364224 102364350 -74609790 + GA-rich Low_complexity Low_complexity 3 127 0 1072 260 153 43 chrX 102364554 102364793 -74609347 - MLT1L LTR MaLR -94 521 310 2583 46 0 0 chrX 102364793 102365096 -74609044 + AluY SINE Alu 1 303 -8 1072 260 153 43 chrX 102365096 102365321 -74608819 - MLT1L LTR MaLR -305 310 6 183 80 0 0 chrX 102365561 102365586 -74608554 + (CA)n Simple_repeat Simple_repeat 2 26 0 210 191 0 0 chrX 102365793 102365835 -74608305 + (TG)n Simple_repeat Simple_repeat 2 43 0 555 291 30 0 chrX 102366232 102366397 -74607743 + MIR SINE MIR 64 233 -29 463 275 12 88 chrX 102366640 102366729 -74607411 - L2 LINE L2 -10 3303 3230 866 239 61 0 chrX 102366729 102366926 -74607214 - MER63A DNA MER1_type 0 210 2 463 275 12 88 chrX 102366926 102366996 -74607144 - L2 LINE L2 -83 3230 3156 3595 262 127 41 chrX 102367148 102369283 -74604857 - HAL1 LINE L1 -9 2498 179 692 209 74 6 chrX 102369623 102369786 -74604354 + MIR SINE MIR 89 262 0 202 274 96 27 chrX 102369812 102369885 -74604255 - L2 LINE L2 -33 3280 3203 744 227 130 5 chrX 102370060 102370267 -74603873 - MIR SINE MIR -16 246 14 191 358 28 28 chrX 102372445 102372554 -74601586 + MIR3 SINE MIR 3 111 -97 * 1378 220 53 37 chrX 102372539 102372894 -74601246 - L2 LINE L2 -860 2454 2094 209 260 0 0 chrX 102372966 102373016 -74601124 - L3 LINE CR1 -7 1570 1521 446 296 113 0 chrX 102373027 102373186 -74600954 + MIR3 SINE MIR 32 208 0 245 226 0 65 chrX 102373181 102373243 -74600897 - MIR SINE MIR -114 148 91 * 519 277 25 6 chrX 102373304 102373463 -74600677 - MER5B DNA MER1_type -11 167 6 234 292 0 0 chrX 102374058 102374123 -74600017 + (TG)n Simple_repeat Simple_repeat 2 66 0 186 213 127 113 chrX 102375509 102375659 -74598481 + L2 LINE L2 3159 3310 -3 417 265 10 0 chrX 102376940 102377042 -74597098 + MIR SINE MIR 148 250 -12 622 254 0 0 chrX 102377554 102377676 -74596464 + MIR3 SINE MIR 73 194 -14 607 268 22 70 chrX 102378800 102379028 -74595112 - MIR SINE MIR -43 219 3 232 296 70 70 chrX 102379816 102379988 -74594152 + MIR SINE MIR 18 189 -73 896 148 51 90 chrX 102380484 102380740 -74593400 + MER33 DNA MER1_type 1 246 -78 11226 52 0 0 chrX 102380745 102382918 -74591222 - L1PA5 LINE L1 -3 6151 3978 546 15 0 0 chrX 102382918 102382983 -74591157 + L1P LINE L1 3754 3818 -2328 401 184 23 11 chrX 102382983 102383070 -74591070 + MER33 DNA MER1_type 235 322 -2 195 296 19 0 chrX 102383213 102383267 -74590873 + L2 LINE L2 3213 3267 -5 651 238 128 69 chrX 102383591 102383881 -74590259 + MER102a DNA MER1_type 4 310 -20 31 44 0 0 chrX 102385207 102385252 -74588888 + AT_rich Low_complexity Low_complexity 1 45 0 264 284 299 8 chrX 102386032 102386166 -74587974 + MIR3 SINE MIR 9 181 -27 1156 184 17 111 chrX 102388084 102388443 -74585697 + MLT1A1 LTR MaLR 1 325 -40 6226 196 16 90 chrX 102388460 102390114 -74584026 + MLT1A1-int LTR MaLR 1 1531 -204 745 205 38 129 chrX 102390115 102390456 -74583684 + MLT1A2 LTR MaLR 60 369 -5 192 163 116 0 chrX 102390740 102390783 -74583357 + MIR3 SINE MIR 119 166 -42 * 692 211 60 18 chrX 102390777 102390943 -74583197 - MER5B DNA MER1_type -5 173 1 214 271 17 0 chrX 102390943 102390998 -74583142 + MIR3 SINE MIR 153 208 0 192 213 0 0 chrX 102391519 102391580 -74582560 + T-rich Low_complexity Low_complexity 1 61 0 7339 31 0 0 chrX 102391581 102392483 -74581657 - L1PA3 LINE L1 0 6155 5254 10703 24 0 0 chrX 102392494 102393975 -74580165 + L1PA3 LINE L1 3745 5225 -921 245 276 16 39 chrX 102394376 102394503 -74579637 + CT-rich Low_complexity Low_complexity 2 125 0 343 326 62 0 chrX 102394604 102394733 -74579407 - MIR3 SINE MIR -37 171 35 574 321 11 5 chrX 102395060 102395244 -74578896 + MIR3 SINE MIR 15 199 -9 239 168 19 178 chrX 102395367 102395474 -74578666 + MER91C DNA MER1_type 1 90 -50 269 178 0 0 chrX 102395954 102395999 -74578141 + MER91C DNA MER1_type 146 190 0 945 195 0 16 chrX 102396318 102396508 -74577632 - MER5A DNA MER1_type -2 187 1 204 40 0 0 chrX 102396598 102396623 -74577517 + (T)n Simple_repeat Simple_repeat 1 25 0 2468 53 0 3 chrX 102396814 102397113 -74577027 - AluY SINE Alu -13 298 1 694 295 35 28 chrX 102398363 102398617 -74575523 + MIR SINE MIR 6 261 -1 2470 80 0 6 chrX 102399087 102399400 -74574740 - AluSq SINE Alu -2 311 1 3040 193 123 29 chrX 102399624 102400568 -74573572 - L1MC4 LINE L1 0 8042 7010 477 255 69 27 chrX 102400548 102400736 -74573404 - L1MC4 LINE L1 -1382 6660 6465 * 922 344 78 54 chrX 102401350 102401841 -74572299 + L2 LINE L2 368 846 -2468 2510 53 0 3 chrX 102401841 102402143 -74571997 + AluY SINE Alu 1 301 -10 922 344 78 54 chrX 102402143 102402637 -74571503 + L2 LINE L2 846 1377 -1937 207 289 19 0 chrX 102402638 102402690 -74571450 + L2 LINE L2 2577 2629 -685 2621 93 0 6 chrX 102402722 102403088 -74571052 - L1PB1 LINE L1 -4 6147 5784 222 111 19 37 chrX 102403089 102403143 -74570997 + (TA)n Simple_repeat Simple_repeat 1 53 0 2014 67 0 72 chrX 102403145 102403161 -74570979 - L1PB1 LINE L1 -360 5791 5775 297 0 0 0 chrX 102403161 102403194 -74570946 + (CA)n Simple_repeat Simple_repeat 2 34 0 2014 67 0 72 chrX 102403194 102403463 -74570677 - L1PB1 LINE L1 -376 5775 5488 2284 111 0 0 chrX 102403463 102403760 -74570380 + AluSq SINE Alu 1 297 -16 2014 67 0 72 chrX 102403760 102403793 -74570347 - L1PB1 LINE L1 -663 5488 5502 1903 151 42 3 chrX 102403793 102404130 -74570010 - L1MC1 LINE L1 -8 6325 5976 2014 67 0 72 chrX 102404130 102404171 -74569969 - L1PB1 LINE L1 -648 5503 5461 240 315 56 0 chrX 102404173 102404262 -74569878 + L2 LINE L2 2665 2758 -556 1473 265 33 4 chrX 102404267 102404806 -74569334 - L1M4 LINE L1 -2629 3517 2963 712 113 0 32 chrX 102404836 102404960 -74569180 + FLAM_C SINE Alu 24 143 0 346 276 78 0 chrX 102404965 102405081 -74569059 - L1MC5 LINE L1 -60 7901 7777 440 264 135 0 chrX 102405221 102405384 -74568756 + MER58C DNA MER1_type 28 212 -3 1555 212 114 51 chrX 102405385 102405974 -74568166 - L1ME2 LINE L1 -111 6053 5428 1437 159 62 3 chrX 102405976 102406265 -74567875 - L1MB2 LINE L1 -2 6169 5864 1266 225 43 53 chrX 102406293 102406760 -74567380 - L1ME2 LINE L1 -9 6653 6192 * 3867 154 47 17 chrX 102406758 102407523 -74566617 - L1MB2 LINE L1 -2 6169 5382 1528 212 72 14 chrX 102407527 102408072 -74566068 - L1ME2 LINE L1 -459 6203 5616 602 215 9 5 chrX 102408072 102408288 -74565852 + CT-rich Low_complexity Low_complexity 1 217 0 2763 254 274 9 chrX 102408331 102410374 -74563766 - L1ME2 LINE L1 -1117 5527 2945 683 242 45 0 chrX 102410374 102410531 -74563609 + MER63A DNA MER1_type 4 167 -43 1779 279 49 38 chrX 102410616 102411789 -74562351 - L1ME2 LINE L1 -3875 2950 1766 947 265 105 22 chrX 102411800 102412474 -74561666 - L1ME2 LINE L1 -4837 1705 1014 313 283 65 0 chrX 102412500 102412592 -74561548 - L1ME2 LINE L1 -5907 727 630 23 33 0 0 chrX 102413418 102413448 -74560692 + AT_rich Low_complexity Low_complexity 1 30 0 476 359 69 49 chrX 102413556 102414036 -74560104 + L2 LINE L2 2784 3271 -1 1992 102 3 81 chrX 102414258 102414590 -74559550 + AluSx SINE Alu 1 306 -6 2033 107 0 4 chrX 102414858 102415120 -74559020 + AluSx SINE Alu 35 295 -17 901 255 38 91 chrX 102415441 102415892 -74558248 - MLT1J2 LTR MaLR -8 442 16 266 342 166 0 chrX 102416190 102416377 -74557763 + L2 LINE L2 2387 2604 -710 625 302 55 91 chrX 102416430 102416926 -74557214 + L2 LINE L2 1906 2377 -937 1305 221 83 56 chrX 102416926 102417369 -74556771 - LTR16A1 LTR ERVL 0 457 3 625 302 55 91 chrX 102417369 102417487 -74556653 + L2 LINE L2 2377 2498 -816 477 378 27 58 chrX 102417529 102418013 -74556127 + L2 LINE L2 2770 3271 -1 1707 211 54 70 chrX 102418317 102418594 -74555546 - MLT1E2 LTR MaLR 0 626 359 2615 104 20 0 chrX 102418594 102418951 -74555189 - THE1B LTR MaLR 0 364 1 1707 211 54 70 chrX 102418951 102419171 -74554969 - MLT1E2 LTR MaLR -267 359 137 2791 71 6 0 chrX 102419649 102420002 -74554138 - THE1A LTR MaLR 0 355 1 11312 85 12 0 chrX 102420002 102421563 -74552577 - THE1A-int LTR MaLR 0 1580 1 2587 99 3 3 chrX 102421566 102421918 -74552222 - THE1A LTR MaLR -3 352 1 246 79 0 53 chrX 102422627 102422665 -74551475 + L2 LINE L2 3263 3298 -15 314 284 25 12 chrX 102422666 102422747 -74551393 - MIR3 SINE MIR -119 89 8 22 35 0 0 chrX 102423138 102423167 -74550973 + AT_rich Low_complexity Low_complexity 1 29 0 768 294 62 17 chrX 102423234 102423713 -74550427 - L1MC4a LINE L1 -101 6020 5520 247 216 0 20 chrX 102424482 102424533 -74549607 + L2 LINE L2 3263 3312 -1 1862 207 26 22 chrX 102424721 102425180 -74548960 - MER65C LTR ERV1 0 461 1 496 277 88 15 chrX 102425701 102425838 -74548302 - MIR3 SINE MIR -39 169 23 2163 90 0 0 chrX 102425890 102426158 -74547982 + AluSg SINE Alu 32 299 -11 200 0 100 0 chrX 102426294 102426324 -74547816 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 816 292 71 63 chrX 102426376 102426983 -74547157 + L2 LINE L2 2664 3271 -1 207 184 61 20 chrX 102427042 102427091 -74547049 - L3 LINE CR1 -12 1565 1515 * 274 254 48 74 chrX 102427087 102427202 -74546938 - MIR3 SINE MIR -113 95 4 184 336 15 93 chrX 102428559 102428818 -74545322 + L2 LINE L2 2817 3055 -217 354 238 0 0 chrX 102428842 102428922 -74545218 + MER116 DNA Mariner 1 80 0 393 273 109 8 chrX 102429188 102429316 -74544824 + L2 LINE L2 3128 3268 -4 2369 199 53 38 chrX 102430403 102431080 -74543060 + L1MC4a LINE L1 7122 7808 0 502 318 145 17 chrX 102431146 102431570 -74542570 + L2 LINE L2 2718 3188 -84 309 242 234 16 chrX 102432002 102432130 -74542010 - L2 LINE L2 -536 2778 2623 917 256 20 5 chrX 102432329 102432528 -74541612 + MIR SINE MIR 41 242 -20 184 300 200 0 chrX 102434985 102435075 -74539065 - L2 LINE L2 -1590 1724 1617 405 248 59 0 chrX 102436176 102436277 -74537863 + L2 LINE L2 3206 3312 -1 345 82 0 0 chrX 102438743 102438792 -74535348 + (ATG)n Simple_repeat Simple_repeat 2 50 0 875 272 9 9 chrX 102438823 102439040 -74535100 - MIR SINE MIR -38 224 8 449 245 3 22 chrX 102439639 102439741 -74534399 + MER5B DNA MER1_type 87 178 0 189 333 43 14 chrX 102440474 102440615 -74533525 + L2 LINE L2 1745 1889 -1425 1187 320 55 28 chrX 102440863 102441462 -74532678 + L2 LINE L2 2082 2696 -618 281 294 167 0 chrX 102441464 102441566 -74532574 + L2 LINE L2 3127 3245 -27 314 302 290 23 chrX 102441587 102441984 -74532156 + L2 LINE L2 2250 2752 -562 211 270 248 22 chrX 102442127 102442264 -74531876 + L2 LINE L2 2976 3143 -129 182 313 36 36 chrX 102442326 102442409 -74531731 + L2 LINE L2 3177 3259 -54 816 128 0 0 chrX 102442428 102442545 -74531595 + AluJb SINE Alu 1 117 -195 545 283 28 0 chrX 102447069 102447214 -74526926 - MIR3 SINE MIR -25 183 35 255 298 0 61 chrX 102447973 102448087 -74526053 + GA-rich Low_complexity Low_complexity 4 110 0 4171 153 24 16 chrX 102449006 102449747 -74524393 - L1MA7 LINE L1 0 6291 5545 256 361 0 31 chrX 102449972 102450069 -74524071 + MIR SINE MIR 34 127 -81 404 273 129 15 chrX 102450209 102450375 -74523765 + MIR SINE MIR 19 195 -63 184 296 23 0 chrX 102450942 102450986 -74523154 - L2 LINE L2 -19 3253 3209 207 207 293 0 chrX 102451068 102451126 -74523014 + L2 LINE L2 3149 3223 -49 216 0 0 0 chrX 102453883 102453907 -74520233 + (TC)n Simple_repeat Simple_repeat 2 25 0 23 86 0 0 chrX 102457898 102457956 -74516184 + AT_rich Low_complexity Low_complexity 1 58 0 252 109 0 22 chrX 102458169 102458215 -74515925 - L1ME4a LINE L1 -16 6105 6061 417 52 0 0 chrX 102458466 102458524 -74515616 - Alu SINE Alu -1 309 252 258 350 128 0 chrX 102459359 102459476 -74514664 - MIR3 SINE MIR -4 204 73 410 315 56 116 chrX 102460892 102461270 -74512870 + L2 LINE L2 2918 3272 0 380 90 0 75 chrX 102461401 102461535 -74512605 + (TA)n Simple_repeat Simple_repeat 2 125 0 453 255 0 0 chrX 102461695 102461852 -74512288 + (TA)n Simple_repeat Simple_repeat 2 158 0 300 247 21 43 chrX 102461853 102461946 -74512194 + L1MC4 LINE L1 6613 6703 -1339 543 247 0 0 chrX 102461963 102462263 -74511877 + (TA)n Simple_repeat Simple_repeat 1 300 0 312 255 0 43 chrX 102462268 102462362 -74511778 + L1MC4 LINE L1 6614 6703 -1339 * 317 263 0 42 chrX 102462294 102462389 -74511751 - L1MC4 LINE L1 -1339 6703 6613 947 282 75 35 chrX 102462683 102463059 -74511081 + L3 LINE CR1 1185 1575 -2 653 189 0 0 chrX 102464792 102464903 -74509237 + MER7A DNA MER2_type 1 109 -237 408 143 16 0 chrX 102464916 102464979 -74509161 + Tigger2 DNA MER2_type 6 69 -2649 * 2236 86 0 10 chrX 102464969 102465283 -74508857 + Tigger2 DNA MER2_type 2273 2583 -135 882 191 12 6 chrX 102465306 102465468 -74508672 + Tigger2 DNA MER2_type 2556 2718 0 1332 154 23 0 chrX 102465469 102465683 -74508457 + MER7A DNA MER2_type 118 336 -1 754 238 49 0 chrX 102465939 102466103 -74508037 - MIR3 SINE MIR -5 203 32 607 276 42 16 chrX 102467675 102467867 -74506273 - MIR SINE MIR -58 204 8 602 285 67 10 chrX 102468861 102469054 -74505086 + L2 LINE L2 2881 3084 -229 1396 217 85 77 chrX 102469609 102470357 -74503783 - LTR1B LTR ERV1 0 826 1 256 167 37 0 chrX 102471116 102471170 -74502970 - MIR3 SINE MIR -4 204 149 301 91 0 0 chrX 102471439 102471483 -74502657 - L1MA9 LINE L1 -36 6276 6233 216 0 0 0 chrX 102472469 102472493 -74501647 + (CA)n Simple_repeat Simple_repeat 2 25 0 490 318 58 7 chrX 102472563 102472717 -74501423 + MIR3 SINE MIR 32 193 -15 432 264 218 16 chrX 102473319 102473512 -74500628 + MIR SINE MIR 28 259 -3 198 279 152 0 chrX 102473790 102473869 -74500271 - MIR SINE MIR -60 202 112 929 298 98 31 chrX 102474069 102474489 -74499651 + MLT1J2 LTR MaLR 3 450 0 328 181 153 0 chrX 102474526 102474596 -74499544 - Tigger7 DNA MER2_type -2 2489 2409 1526 105 0 9 chrX 102474596 102474815 -74499325 - Tigger1 DNA MER2_type 0 2418 2202 1060 133 0 6 chrX 102474804 102474962 -74499178 - Tigger1 DNA MER2_type -2261 157 1 * 1452 191 0 40 chrX 102474984 102475256 -74498884 - Tigger7 DNA MER2_type -472 261 1 275 291 13 0 chrX 102475879 102475958 -74498182 - L3b LINE CR1 -208 1375 1296 260 125 0 36 chrX 102476551 102476607 -74497533 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 405 0 0 0 chrX 102477154 102477199 -74496941 + (CA)n Simple_repeat Simple_repeat 2 46 0 396 103 0 0 chrX 102477446 102477504 -74496636 + (TG)n Simple_repeat Simple_repeat 2 59 0 2312 104 0 13 chrX 102478857 102479173 -74494967 + AluSx SINE Alu 1 312 0 2411 47 0 0 chrX 102479745 102480063 -74494077 - AluY SINE Alu 0 319 2 309 278 46 87 chrX 102480852 102481025 -74493115 + MIR3 SINE MIR 35 200 -8 261 290 14 0 chrX 102481894 102481963 -74492177 + GA-rich Low_complexity Low_complexity 2 71 0 1748 163 6 39 chrX 102481997 102482334 -74491806 + MARNA DNA Mariner 261 586 0 195 330 140 0 chrX 102482567 102482667 -74491473 + L2 LINE L2 3153 3266 -6 534 283 51 46 chrX 102482793 102483030 -74491110 + MIR SINE MIR 2 239 -23 333 0 0 0 chrX 102483403 102483440 -74490700 + (TA)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chrX 102483448 102483482 -74490658 + (CA)n Simple_repeat Simple_repeat 2 35 0 1882 146 7 11 chrX 102486736 102487023 -74487117 - AluJo SINE Alu -23 289 4 319 338 180 40 chrX 102487222 102487646 -74486494 + L2 LINE L2 1238 1601 -1713 225 65 0 0 chrX 102487646 102487677 -74486463 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 319 338 180 40 chrX 102487677 102488063 -74486077 + L2 LINE L2 1601 2162 -1152 5906 118 23 16 chrX 102488068 102488984 -74485156 - L1MA3 LINE L1 0 6305 5384 1300 217 4 0 chrX 102488988 102489237 -74484903 + L1PA13 LINE L1 1165 1414 -6167 8763 241 24 28 chrX 102489238 102492513 -74481627 + L1PB1 LINE L1 693 3958 -3626 29203 71 1 1 chrX 102492560 102498714 -74475426 + L1PA5 LINE L1 1 6154 0 8994 194 24 38 chrX 102498737 102499784 -74474356 + L1PA13 LINE L1 3788 4849 -2735 2221 90 0 4 chrX 102499784 102500062 -74474078 - AluY SINE Alu -24 287 11 8994 194 24 38 chrX 102500062 102500217 -74473923 + L1PA13 LINE L1 4849 5005 -2579 207 0 0 0 chrX 102500217 102500240 -74473900 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 8994 194 24 38 chrX 102500240 102501381 -74472759 + L1PA13 LINE L1 5005 6098 -1486 6424 125 68 18 chrX 102501379 102501744 -74472396 - L1PBa LINE L1 -3604 3258 2912 * 2021 101 38 0 chrX 102501744 102502011 -74472129 - AluY SINE Alu -12 299 23 6424 125 68 18 chrX 102502011 102503115 -74471025 - L1PBa LINE L1 -3950 2912 1709 * 9726 180 23 5 chrX 102503111 102504522 -74469618 + L1PB1 LINE L1 4421 5804 -1785 1837 31 0 9 chrX 102504522 102504732 -74469408 + L1PA4 LINE L1 5932 6144 -11 225 0 0 0 chrX 102504732 102504757 -74469383 + (CA)n Simple_repeat Simple_repeat 2 26 0 1837 31 0 9 chrX 102504757 102504769 -74469371 + L1PA4 LINE L1 6144 6155 0 9726 180 23 5 chrX 102504769 102506481 -74467659 + L1PB1 LINE L1 5804 7589 0 5267 141 14 3 chrX 102506494 102507982 -74466158 + L1PA13 LINE L1 6082 7582 -19 241 207 35 11 chrX 102507982 102508069 -74466071 - L1 LINE L1 -2928 3218 3130 2067 88 46 29 chrX 102508072 102508378 -74465762 - AluY SINE Alu 0 311 1 197 381 76 8 chrX 102508404 102508522 -74465618 + L2 LINE L2 2918 3043 -229 212 320 0 0 chrX 102508527 102508577 -74465563 + L2 LINE L2 3207 3256 -16 26309 94 6 9 chrX 102508789 102509789 -74464351 + L1PA7 LINE L1 1321 2323 -3831 207 0 0 0 chrX 102509789 102509812 -74464328 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 26309 94 6 9 chrX 102509812 102513650 -74460490 + L1PA7 LINE L1 2323 6143 -11 21 57 0 0 chrX 102513877 102513912 -74460228 + AT_rich Low_complexity Low_complexity 1 35 0 869 208 20 0 chrX 102514108 102514305 -74459835 + MLT2B1 LTR ERVL 1 201 -319 1054 166 17 137 chrX 102514317 102514661 -74459479 + MLT1A1 LTR MaLR 3 305 -60 319 0 0 0 chrX 102514661 102514699 -74459441 - L1PA4 LINE L1 -299 5856 5819 * 2419 42 9 21 chrX 102514668 102514999 -74459141 + L1PA4 LINE L1 5829 6155 0 232 299 68 43 chrX 102515753 102515870 -74458270 - L2 LINE L2 -14 3299 3180 446 285 69 0 chrX 102516515 102516659 -74457481 + L2 LINE L2 2964 3117 -196 2328 195 162 116 chrX 102516684 102517659 -74456481 + LTR28 LTR ERV1 1 1020 0 16449 166 20 22 chrX 102517827 102521778 -74452362 + HUERS-P2 LTR ERV1 74 4223 -417 5263 139 6 12 chrX 102521778 102522622 -74451518 + LTR28-int LTR ERV1 6252 7090 -1 358 228 81 16 chrX 102522623 102522750 -74451390 + LTR28 LTR ERV1 1 122 -704 1661 178 107 82 chrX 102522779 102523340 -74450800 + LTR28 LTR ERV1 109 674 -111 396 250 158 0 chrX 102523342 102523462 -74450678 - MER5A DNA MER1_type -18 171 33 820 134 117 18 chrX 102523569 102523740 -74450400 + MER20 DNA MER1_type 32 219 0 22 35 0 0 chrX 102523799 102523828 -74450312 + AT_rich Low_complexity Low_complexity 1 29 0 354 321 0 9 chrX 102523970 102524082 -74450058 - MIR3 SINE MIR -7 201 91 512 268 318 0 chrX 102524361 102524559 -74449581 - MIR SINE MIR 0 262 2 302 353 8 0 chrX 102524589 102524708 -74449432 + L2 LINE L2 3152 3271 -1 427 309 87 0 chrX 102526338 102526487 -74447653 + MIR3 SINE MIR 45 206 -2 770 268 34 19 chrX 102527275 102527480 -74446660 + MER63A DNA MER1_type 1 208 -2 1035 262 0 34 chrX 102528568 102528831 -74445309 - MIR SINE MIR -2 260 7 187 380 51 0 chrX 102528892 102528971 -74445169 + MIR SINE MIR 31 113 -95 367 271 103 0 chrX 102529778 102529885 -74444255 + MER94 DNA DNA 1 118 -16 500 274 82 59 chrX 102530543 102530798 -74443342 + MIR SINE MIR 1 261 -1 207 284 30 0 chrX 102531251 102531318 -74442822 + CT-rich Low_complexity Low_complexity 3 71 0 18667 166 24 12 chrX 102532362 102534693 -74439447 + L1MA2 LINE L1 16 2317 -5406 4410 36 4 0 chrX 102534693 102535217 -74438923 - L1PA5 LINE L1 -4 6150 5625 18667 166 24 12 chrX 102535217 102540467 -74433673 + L1MA2 LINE L1 2317 7698 -25 223 70 23 23 chrX 102540467 102540510 -74433630 + (TA)n Simple_repeat Simple_repeat 1 43 0 18667 166 24 12 chrX 102540510 102540537 -74433603 + L1MA2 LINE L1 7698 7723 0 215 239 0 0 chrX 102540955 102541001 -74433139 + CT-rich Low_complexity Low_complexity 1 46 0 274 290 0 0 chrX 102541200 102541269 -74432871 - MIR SINE MIR 0 262 194 766 299 22 0 chrX 102541303 102541531 -74432609 + MIR SINE MIR 31 262 0 643 274 18 12 chrX 102541543 102541711 -74432429 - MIR SINE MIR -87 175 7 190 283 94 0 chrX 102542306 102542359 -74431781 - L2 LINE L2 -302 3011 2954 273 237 43 43 chrX 102542435 102542528 -74431612 - MARNA DNA Mariner -9 577 485 575 266 128 14 chrX 102543434 102543652 -74430488 - MIR SINE MIR 0 262 20 761 248 66 63 chrX 102543851 102544186 -74429954 + MER102b DNA MER1_type 1 336 -5 3564 168 24 10 chrX 102544776 102545490 -74428650 + L1MB8 LINE L1 5274 5997 -187 885 183 0 6 chrX 102545651 102545831 -74428309 + L1MB8 LINE L1 5998 6176 -2 1116 193 33 109 chrX 102547040 102547433 -74426707 - MLT1A1 LTR MaLR -1 364 2 4246 97 6 10 chrX 102547473 102548095 -74426045 + Harlequin LTR ERV1 2520 3139 -5260 5653 95 13 8 chrX 102548102 102548925 -74425215 + Harlequin LTR ERV1 4080 4906 -3493 1780 167 149 74 chrX 102548927 102549734 -74424406 + Harlequin LTR ERV1 849 1715 -5181 4458 92 2 2 chrX 102549734 102550364 -74423776 + Harlequin LTR ERV1 7770 8399 0 5108 87 27 0 chrX 102550364 102551033 -74423107 + LTR12 LTR ERV1 1 687 -1 1877 211 53 78 chrX 102551202 102551770 -74422370 - MLT2B3 LTR ERVL 0 554 1 251 309 0 0 chrX 102552339 102552407 -74421733 + CT-rich Low_complexity Low_complexity 3 70 0 212 333 48 0 chrX 102553945 102554029 -74420111 - MIR SINE MIR -85 123 36 180 77 0 0 chrX 102555073 102555099 -74419041 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 158 0 0 chrX 102555506 102555544 -74418596 + GA-rich Low_complexity Low_complexity 1 38 0 369 304 201 0 chrX 102555645 102555829 -74418311 - MIR SINE MIR -2 260 40 * 414 270 34 0 chrX 102555793 102555882 -74418258 + MIR SINE MIR 34 125 -137 374 385 130 13 chrX 102556090 102556482 -74417658 - L2 LINE L2 0 3272 2835 898 290 12 20 chrX 102557673 102557925 -74416215 + MIR SINE MIR 13 262 0 214 409 0 0 chrX 102558593 102558686 -74415454 - MIR SINE MIR -111 151 59 866 243 58 29 chrX 102558858 102559101 -74415039 + MIR SINE MIR 3 252 -10 23 0 0 0 chrX 102559104 102559127 -74415013 + AT_rich Low_complexity Low_complexity 1 23 0 297 263 38 0 chrX 102559138 102559218 -74414922 + MIR SINE MIR 180 262 0 297 303 50 0 chrX 102559376 102559475 -74414665 + L3 LINE CR1 1392 1495 -82 536 206 0 0 chrX 102559520 102559617 -74414523 - MIR SINE MIR -101 161 65 289 200 0 0 chrX 102560326 102560381 -74413759 - MER21B LTR ERV1 -124 739 685 216 294 137 10 chrX 102560648 102560750 -74413390 + L2 LINE L2 2951 3065 -207 1088 36 0 7 chrX 102560816 102560954 -74413186 + (TTTC)n Simple_repeat Simple_repeat 2 138 0 1422 244 107 65 chrX 102561161 102561780 -74412360 + MER21B LTR ERV1 67 711 -152 320 273 50 0 chrX 102561781 102561880 -74412260 + MER21B LTR ERV1 651 754 -109 911 220 33 32 chrX 102562075 102562511 -74411629 + MLT1D LTR MaLR 1 473 -32 3021 139 18 65 chrX 102562514 102563111 -74411029 + Tigger3b DNA MER2_type 4 572 -659 18795 178 26 8 chrX 102563124 102570696 -74403444 + L1MA2 LINE L1 8 7721 -2 710 169 10 73 chrX 102570703 102570938 -74403202 + L1M3c LINE L1 1040 1266 -4875 1759 223 7 7 chrX 102570959 102571380 -74402760 + L1ME1 LINE L1 5490 5910 -256 1436 247 25 31 chrX 102571384 102571776 -74402364 - MSTD LTR MaLR -6 390 1 449 284 31 42 chrX 102571776 102572037 -74402103 + L1ME1 LINE L1 5904 6161 -5 289 252 43 139 chrX 102572341 102572456 -74401684 - L2 LINE L2 -15 3257 3154 275 277 0 107 chrX 102573531 102573643 -74400497 + MIR3 SINE MIR 102 201 -7 261 254 67 119 chrX 102573659 102573781 -74400359 - L2 LINE L2 0 3272 3156 1951 39 0 0 chrX 102573781 102574014 -74400126 + L1PA3 LINE L1 5920 6152 -3 261 254 67 119 chrX 102574014 102574025 -74400115 - L2 LINE L2 -116 3156 3146 1462 275 5 26 chrX 102574783 102575208 -74398932 + L1M2 LINE L1 182 597 -5716 * 11671 214 53 8 chrX 102575188 102578953 -74395187 + L1M2 LINE L1 2068 6003 -524 306 50 0 0 chrX 102579069 102579109 -74395031 + (CA)n Simple_repeat Simple_repeat 2 41 0 34861 98 5 10 chrX 102579366 102585535 -74388605 + L1PA6 LINE L1 11 6151 -3 454 313 108 0 chrX 102585789 102585955 -74388185 - MIR3 SINE MIR -11 197 14 537 120 22 68 chrX 102586164 102586299 -74387841 + LTR10A LTR ERV1 433 609 0 702 198 54 140 chrX 102586299 102586879 -74387261 + LTR10A-int LTR ERV1 5 499 -6335 789 152 0 22 chrX 102587260 102587444 -74386696 + GA-rich Low_complexity Low_complexity 1 180 0 5236 94 12 30 chrX 102587480 102588430 -74385710 + LTR10A-int LTR ERV1 710 4405 -3380 822 89 15 0 chrX 102588407 102588542 -74385598 + Harlequin LTR ERV1 1584 1720 -5176 * 298 238 0 60 chrX 102588543 102588627 -74385513 - LTR8 LTR ERV1 -456 235 157 10799 159 10 24 chrX 102588629 102589910 -74384230 + Harlequin LTR ERV1 1806 3104 -3545 2292 97 0 0 chrX 102589910 102590198 -74383942 - AluY SINE Alu -23 288 1 10799 159 10 24 chrX 102590198 102592094 -74382046 + Harlequin LTR ERV1 3104 6645 -4 1343 177 191 30 chrX 102592105 102592535 -74381605 + LTR10A LTR ERV1 12 510 -99 35 0 0 0 chrX 102592538 102592573 -74381567 + AT_rich Low_complexity Low_complexity 1 35 0 2654 161 21 44 chrX 102592658 102593225 -74380915 - L1MD1 LINE L1 0 6242 5689 363 132 15 0 chrX 102593242 102593310 -74380830 - L1MD1 LINE L1 -930 5370 5302 * 865 162 11 32 chrX 102593304 102593440 -74380700 - L1MC/D LINE L1 -546 5696 5564 1960 164 122 10 chrX 102593440 102593825 -74380315 + MSTA LTR MaLR 1 428 0 865 162 11 32 chrX 102593825 102593873 -74380267 - L1MC/D LINE L1 -678 5564 5516 * 1706 245 42 12 chrX 102593870 102594442 -74379698 - L1MDa LINE L1 -1841 4699 4111 6649 56 2 0 chrX 102594444 102595313 -74378827 - L1PA6 LINE L1 0 6154 5284 * 27905 111 7 9 chrX 102595307 102599735 -74374405 - L1PA6 LINE L1 -1718 4428 11 3796 256 51 11 chrX 102599748 102601369 -74372771 - L1MDa LINE L1 -2421 4119 2431 7117 218 41 40 chrX 102601382 102602186 -74371954 - L1MDa LINE L1 -4358 2182 1381 9508 110 11 3 chrX 102602186 102604433 -74369707 - L1PA8 LINE L1 0 6172 3912 7117 218 41 40 chrX 102604433 102605706 -74368434 - L1MDa LINE L1 -5159 1381 101 446 225 366 0 chrX 102605708 102605850 -74368290 + Tigger5 DNA MER2_type 1 194 -2129 * 527 138 0 0 chrX 102605847 102605927 -74368213 + Tigger5 DNA MER2_type 2244 2323 0 442 169 0 12 chrX 102605927 102606010 -74368130 - L1MDa LINE L1 -6440 100 19 180 0 0 0 chrX 102606041 102606061 -74368079 + (TG)n Simple_repeat Simple_repeat 1 20 0 737 313 36 31 chrX 102606239 102606463 -74367677 + MIR SINE MIR 2 226 -36 210 395 0 25 chrX 102606569 102606688 -74367452 + L2 LINE L2 2826 2941 -331 343 275 175 64 chrX 102608099 102608442 -74365698 + MLT1I LTR MaLR 67 446 0 937 347 135 45 chrX 102608444 102610458 -74363682 + L2 LINE L2 701 2894 -420 887 274 71 14 chrX 102610547 102611057 -74363083 - L1MEc LINE L1 -5222 1174 636 2019 161 113 2 chrX 102611067 102611132 -74363008 - L1MA9 LINE L1 -6 6306 6250 309 51 0 0 chrX 102611132 102611171 -74362969 + (TA)n Simple_repeat Simple_repeat 2 40 0 2019 161 113 2 chrX 102611171 102611546 -74362594 - L1MA9 LINE L1 -62 6250 5817 11407 161 15 13 chrX 102611569 102614629 -74359511 - L1MA2 LINE L1 0 6304 3229 2021 158 111 5 chrX 102614629 102615016 -74359124 + MSTA LTR MaLR 1 428 0 11407 161 15 13 chrX 102615016 102615399 -74358741 - L1MA2 LINE L1 -3075 3229 2849 3243 142 24 2 chrX 102615403 102615954 -74358186 - L1PA12 LINE L1 -212 5956 5394 3025 99 11 5 chrX 102615956 102616389 -74357751 - L1PA8 LINE L1 -4 6168 5733 3028 168 16 2 chrX 102616395 102616954 -74357186 - HSMAR2 DNA Mariner -734 568 2 2452 200 8 2 chrX 102616954 102617458 -74356682 - L1 LINE L1 -2135 4011 3505 1107 214 0 7 chrX 102617453 102617734 -74356406 + L1 LINE L1 4489 4767 -1379 * 555 79 124 0 chrX 102617733 102617822 -74356318 + L1PB1 LINE L1 5874 5973 -178 * 2200 98 3 25 chrX 102617823 102618141 -74355999 + AluY SINE Alu 1 311 0 703 162 5 50 chrX 102618261 102618459 -74355681 + HERVH LTR ERV1 2799 2987 -4726 * 780 169 20 0 chrX 102618453 102618601 -74355539 + HERVH LTR ERV1 3140 3290 -4423 * 3167 115 4 6 chrX 102618591 102619094 -74355046 + HERVH LTR ERV1 3492 3993 -3720 4127 143 0 1 chrX 102619096 102619759 -74354381 + HERVH LTR ERV1 4488 5149 -2564 1237 115 58 0 chrX 102619760 102619968 -74354172 + HERVH LTR ERV1 5600 5819 -1894 2314 95 42 13 chrX 102619968 102620347 -74353793 + HERVH LTR ERV1 7324 7713 0 3771 31 0 2 chrX 102620347 102620796 -74353344 + LTR7 LTR ERV1 1 448 -2 453 240 3 42 chrX 102620823 102621021 -74353119 - LTR49-int LTR ERV1 -2492 2379 1308 708 250 99 17 chrX 102621125 102621357 -74352783 - MER34C LTR ERV1 -175 410 160 290 250 91 30 chrX 102621359 102621491 -74352649 - LTR49-int LTR ERV1 -4133 990 851 311 210 16 0 chrX 102622777 102622839 -74351301 - LTR49-int LTR ERV1 -4091 2240 2178 329 272 11 0 chrX 102623003 102623095 -74351045 - LTR49-int LTR ERV1 -4147 2184 2092 * 781 252 17 25 chrX 102623083 102623321 -74350819 - LTR49-int LTR ERV1 -4181 2150 1915 2115 170 30 59 chrX 102623335 102623859 -74350281 - LTR54 LTR ERV1 -1 509 1 290 319 43 25 chrX 102623925 102624088 -74350052 - MIR SINE MIR -13 249 84 249 211 0 0 chrX 102626898 102626950 -74347190 - L3 LINE CR1 -2 1575 1524 230 278 48 87 chrX 102627048 102627174 -74346966 - MIR3 SINE MIR -17 191 71 224 149 21 0 chrX 102627235 102627282 -74346858 + (CA)n Simple_repeat Simple_repeat 2 49 0 290 287 42 0 chrX 102627754 102627921 -74346219 + (CAGAGA)n Simple_repeat Simple_repeat 3 176 0 309 325 0 0 chrX 102628002 102628153 -74345987 + GA-rich Low_complexity Low_complexity 2 152 0 1278 54 60 5 chrX 102628362 102628546 -74345594 + L1PB1 LINE L1 5951 6144 -7 579 136 42 0 chrX 102628570 102628688 -74345452 + L1MA2 LINE L1 6004 6126 -178 5333 127 24 15 chrX 102628692 102629084 -74345056 + L1PA7 LINE L1 3 390 -6079 2263 107 7 0 chrX 102629084 102629375 -74344765 - AluY SINE Alu -18 293 1 5333 127 24 15 chrX 102629375 102635222 -74338918 + L1PA7 LINE L1 390 6469 0 5964 71 43 6 chrX 102635222 102636044 -74338096 + L1PA8 LINE L1 5314 6165 -7 1175 119 0 0 chrX 102636045 102636230 -74337910 + L1MA2 LINE L1 6120 6304 0 2903 176 77 60 chrX 102636240 102636844 -74337296 + L1MB8 LINE L1 5318 5941 -237 2114 163 38 55 chrX 102636844 102637317 -74336823 - MLT1C LTR MaLR -2 465 1 2903 176 77 60 chrX 102637317 102637559 -74336581 + L1MB8 LINE L1 5941 6178 0 1154 168 5 28 chrX 102637686 102637900 -74336240 - MER3 DNA MER1_type 0 209 1 1544 215 66 38 chrX 102639240 102639297 -74334843 - L1ME3 LINE L1 -30 6132 6078 1588 203 21 3 chrX 102639297 102639632 -74334508 - MER58B DNA MER1_type 0 341 1 1544 215 66 38 chrX 102639632 102640043 -74334097 - L1ME3 LINE L1 -84 6078 5651 258 56 0 0 chrX 102640053 102640089 -74334051 + (TG)n Simple_repeat Simple_repeat 1 36 0 498 103 0 0 chrX 102640089 102640167 -74333973 + (GA)n Simple_repeat Simple_repeat 2 79 0 27964 113 13 23 chrX 102640604 102647024 -74327116 - L1PA7 LINE L1 -1 6468 1 18281 98 12 26 chrX 102647172 102649977 -74324163 - HERVH LTR ERV1 -4948 2765 1 3860 25 0 0 chrX 102649979 102650427 -74323713 - LTR7 LTR ERV1 -2 448 1 499 213 52 24 chrX 102650428 102650639 -74323501 + MER31-int LTR ERV1 1774 1990 -2946 411 253 63 72 chrX 102650652 102650873 -74323267 + MER31-int LTR ERV1 2712 2930 -1950 * 693 218 53 42 chrX 102650845 102651221 -74322919 + MER31-int LTR ERV1 1760 2444 -2679 11465 35 1 0 chrX 102651224 102652608 -74321532 - L1PA2 LINE L1 -1387 4759 3375 7565 31 0 0 chrX 102652608 102653999 -74320141 + L1PA2 LINE L1 4763 6153 -2 590 239 8 0 chrX 102654005 102654135 -74320005 + MER31-int LTR ERV1 4054 4184 -3936 3017 197 93 75 chrX 102654198 102654996 -74319144 + MER31-int LTR ERV1 2493 3275 -1596 1610 83 76 40 chrX 102654996 102655272 -74318868 - L1MA5A LINE L1 -4 6293 6008 3017 197 93 75 chrX 102655272 102656303 -74317837 + MER31-int LTR ERV1 3275 4064 -807 973 161 19 0 chrX 102656648 102656809 -74317331 + MER52A LTR ERV1 1592 1755 0 271 226 16 0 chrX 102656809 102656871 -74317269 + MER31-int LTR ERV1 4058 4120 -751 1664 220 108 22 chrX 102656883 102657337 -74316803 + MER31-int LTR ERV1 6629 7121 -416 255 150 0 0 chrX 102657371 102657411 -74316729 + MER31-int LTR ERV1 7108 7147 -390 2479 156 19 59 chrX 102657412 102657939 -74316201 + LTR54 LTR ERV1 5 510 0 508 307 22 22 chrX 102658477 102658656 -74315484 - MLT1J2 LTR MaLR -5 445 267 450 256 175 12 chrX 102658658 102658818 -74315322 - MER5A DNA MER1_type 0 189 4 222 293 0 0 chrX 102658829 102658887 -74315253 + MER5B DNA MER1_type 1 58 -120 2595 243 67 44 chrX 102658888 102660038 -74314102 - L1ME1 LINE L1 -4 6162 4992 270 238 0 32 chrX 102660093 102660156 -74313984 + L1MA4A LINE L1 435 495 -6354 10926 200 53 9 chrX 102660374 102661740 -74312400 + L1MA4A LINE L1 681 1986 -4862 189 0 0 0 chrX 102661740 102661761 -74312379 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 10926 200 53 9 chrX 102661761 102664928 -74309212 + L1MA4A LINE L1 1986 5430 -1418 180 0 0 0 chrX 102664928 102664948 -74309192 + (GAAAA)n Simple_repeat Simple_repeat 2 21 0 10926 200 53 9 chrX 102664948 102665110 -74309030 + L1MA4A LINE L1 5430 5583 -1265 5266 150 23 13 chrX 102665091 102666038 -74308102 + L1MA4A LINE L1 6029 6985 -20 * 9113 236 50 35 chrX 102666059 102666511 -74307629 - L1 LINE L1 -1279 6286 5843 2068 113 21 0 chrX 102666511 102666793 -74307347 - AluSx SINE Alu -24 288 1 9113 236 50 35 chrX 102666793 102669130 -74305010 - L1 LINE L1 -1722 5843 3544 321 26 0 0 chrX 102669130 102669168 -74304972 + (TG)n Simple_repeat Simple_repeat 1 38 0 9113 236 50 35 chrX 102669168 102670798 -74303342 - L1 LINE L1 -4021 3544 2074 1869 145 74 8 chrX 102670798 102671150 -74302990 + THE1C LTR MaLR 1 375 0 9113 236 50 35 chrX 102671150 102671180 -74302960 - L1 LINE L1 -5491 2074 2046 227 289 0 0 chrX 102671236 102671281 -74302859 - L1 LINE L1 -6361 1205 1161 1547 296 50 26 chrX 102671365 102671908 -74302232 - L1 LINE L1 -6227 1339 784 231 61 0 0 chrX 102673019 102673052 -74301088 + (TC)n Simple_repeat Simple_repeat 2 34 0 2334 256 31 38 chrX 102673850 102675790 -74298350 + L1M3c LINE L1 173 2204 -4179 268 284 24 0 chrX 102675898 102676025 -74298115 + L1M3c LINE L1 2025 2154 -4230 377 269 129 6 chrX 102676045 102676216 -74297924 + L2 LINE L2 3034 3225 -88 21 0 0 0 chrX 102676231 102676252 -74297888 + AT_rich Low_complexity Low_complexity 1 21 0 971 219 23 23 chrX 102676269 102676697 -74297443 + L1M3c LINE L1 2166 2598 -3784 9952 222 102 24 chrX 102676741 102677094 -74297046 - L1PB1 LINE L1 -1 6866 6542 180 0 0 0 chrX 102677094 102677114 -74297026 + (TC)n Simple_repeat Simple_repeat 2 21 0 192 40 0 0 chrX 102677115 102677140 -74297000 + (TA)n Simple_repeat Simple_repeat 1 25 0 2055 145 0 3 chrX 102677142 102677439 -74296701 - AluSx SINE Alu -15 297 2 9952 222 102 24 chrX 102677439 102677584 -74296556 - L1PB1 LINE L1 -325 6542 6410 2414 126 16 16 chrX 102677584 102677957 -74296183 - THE1C LTR MaLR -2 373 1 9663 123 47 12 chrX 102677957 102679484 -74294656 - THE1C-int LTR MaLR 0 1580 1 2257 135 13 34 chrX 102679484 102679863 -74294277 - THE1C LTR MaLR 0 375 5 9952 222 102 24 chrX 102679863 102684162 -74289978 - L1PB1 LINE L1 -456 6411 1690 4175 152 40 46 chrX 102684173 102685147 -74288993 - MER11C LTR ERVK -13 1058 1 2365 139 11 6 chrX 102685147 102685858 -74288282 - L1PB1 LINE L1 -5195 1668 804 6482 185 15 38 chrX 102685864 102687752 -74286388 - L1MA2 LINE L1 -296 6008 4155 1101 144 23 0 chrX 102687752 102687925 -74286215 + AluSg/x SINE Alu 135 311 -1 6482 185 15 38 chrX 102687925 102688817 -74285323 - L1MA2 LINE L1 -2149 4155 3244 1071 212 136 5 chrX 102688841 102689223 -74284917 - L1MEc LINE L1 -816 6141 5710 6319 74 2 2 chrX 102689226 102690367 -74283773 - L1PA7 LINE L1 -5 6149 4981 2180 114 6 3 chrX 102690376 102690710 -74283430 + L1PA7 LINE L1 4675 5009 -1137 1844 156 0 30 chrX 102690725 102691026 -74283114 - AluSx SINE Alu -19 293 2 2833 225 93 20 chrX 102691026 102691884 -74282256 - L1MEc LINE L1 -1244 5713 4793 293 204 56 37 chrX 102692071 102692179 -74281961 - L1MEc LINE L1 -2164 4793 4684 * 3163 236 46 16 chrX 102692152 102693281 -74280859 - L1MEc LINE L1 -3097 3860 2710 207 0 0 0 chrX 102693281 102693304 -74280836 + (TA)n Simple_repeat Simple_repeat 2 24 0 3163 236 46 16 chrX 102693304 102693427 -74280713 - L1MEc LINE L1 -4247 2710 2592 2301 265 42 35 chrX 102693742 102694711 -74279429 - L1MEc LINE L1 -4652 2307 1332 2679 292 74 26 chrX 102694840 102695881 -74278259 - L1MEc LINE L1 -5745 1114 24 1117 235 67 0 chrX 102695888 102696216 -74277924 - Charlie4a DNA MER1_type -122 386 37 236 279 62 62 chrX 102896319 102896498 -74077642 + MIR SINE MIR 73 251 -11 562 236 16 16 chrX 102896865 102896992 -74077148 + L2 LINE L2 3187 3313 0 2502 69 0 0 chrX 102897387 102897691 -74076449 - AluY SINE Alu -6 305 2 336 24 0 0 chrX 102897693 102897734 -74076406 + (T)n Simple_repeat Simple_repeat 1 41 0 1893 200 23 59 chrX 102898623 102899094 -74075046 + MLT2B1 LTR ERVL 1 454 -66 183 233 189 78 chrX 102899236 102899326 -74074814 + MIR SINE MIR 19 118 -90 2860 168 18 6 chrX 102899933 102900446 -74073694 - MER73 LTR ERVL 0 644 126 183 361 0 14 chrX 102900796 102900868 -74073272 + MIR3 SINE MIR 89 159 -49 187 118 0 59 chrX 102900933 102900984 -74073156 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 263 94 113 0 chrX 102901331 102901384 -74072756 + Alu SINE Alu 242 300 -2 279 0 0 0 chrX 102901387 102901418 -74072722 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 206 128 26 0 chrX 102901726 102901765 -74072375 + (TG)n Simple_repeat Simple_repeat 1 40 0 2430 46 0 0 chrX 102901950 102902254 -74071886 - AluY SINE Alu 0 304 1 5413 49 0 6 chrX 102902730 102903402 -74070738 - L1PA6 LINE L1 0 6154 5487 4259 122 11 3 chrX 102903465 102904169 -74069971 - L1MA2 LINE L1 -157 6147 5438 2344 78 10 0 chrX 102904288 102904583 -74069557 - AluSp SINE Alu -15 298 1 762 260 73 0 chrX 102904657 102904849 -74069291 - MIR SINE MIR -6 256 51 694 306 70 12 chrX 102905302 102905544 -74068596 - MIR SINE MIR 0 262 7 201 182 0 0 chrX 102906101 102906156 -74067984 + (TA)n Simple_repeat Simple_repeat 1 55 0 973 147 0 2 chrX 102906156 102906343 -74067797 - L1MB5 LINE L1 -199 6463 6280 2912 139 0 2 chrX 102906391 102906954 -74067186 + L1M2 LINE L1 5180 5741 -559 * 3630 204 30 30 chrX 102906951 102907428 -74066712 - L1MB5 LINE L1 -392 6280 5805 3396 34 2 0 chrX 102907428 102907835 -74066305 + L1PA5 LINE L1 5742 6149 -5 3630 204 30 30 chrX 102907835 102908243 -74065897 - L1MB5 LINE L1 -867 5805 5399 413 226 130 26 chrX 102908243 102908358 -74065782 + FLAM_A SINE Alu 1 127 -6 3630 204 30 30 chrX 102908358 102908981 -74065159 - L1MB5 LINE L1 -1273 5399 4764 506 221 25 25 chrX 102908969 102909132 -74065008 - L1MB5 LINE L1 -2216 4428 4266 * 883 259 23 41 chrX 102909149 102909590 -74064550 - L1MB5 LINE L1 -2717 3927 3495 1112 218 22 22 chrX 102909595 102909912 -74064228 - L1MB5 LINE L1 -5393 1149 833 2310 94 7 0 chrX 102910080 102910387 -74063753 - AluY SINE Alu -2 309 1 200 163 23 0 chrX 102910397 102910440 -74063700 + (TA)n Simple_repeat Simple_repeat 1 44 0 1319 301 70 33 chrX 102910450 102911205 -74062935 - L1MB5 LINE L1 -5758 784 2 2465 67 0 29 chrX 102913133 102913448 -74060692 - AluY SINE Alu -5 306 1 229 299 91 0 chrX 102915115 102915192 -74058948 + MIR SINE MIR 19 102 -106 1156 272 126 27 chrX 102915259 102915704 -74058436 - LTR16C LTR ERVL -2 489 1 854 245 51 20 chrX 102915834 102916087 -74058053 - MIR SINE MIR 0 262 2 325 255 10 39 chrX 102918870 102918972 -74055168 + MIR SINE MIR 90 188 -74 360 302 16 23 chrX 102919361 102919503 -74054637 + MIR SINE MIR 35 140 -68 1358 202 99 66 chrX 102919534 102919990 -74054150 + MLT1D LTR MaLR 35 505 0 1015 175 57 28 chrX 102920374 102920585 -74053555 + MER20 DNA MER1_type 3 219 0 180 125 0 0 chrX 102920654 102920686 -74053454 + (T)n Simple_repeat Simple_repeat 1 32 0 478 290 40 8 chrX 102921476 102921600 -74052540 + L2 LINE L2 3145 3272 0 953 192 10 36 chrX 102921753 102921946 -74052194 - MER5A DNA MER1_type -1 188 1 301 289 96 24 chrX 102922055 102922221 -74051919 + L1ME4a LINE L1 5388 5565 -556 517 331 114 14 chrX 102922222 102922503 -74051637 + L2 LINE L2 2982 3290 -23 310 295 12 18 chrX 102922524 102922690 -74051450 + L1ME4a LINE L1 5705 5869 -252 1486 77 0 0 chrX 102922700 102922883 -74051257 + AluSc SINE Alu 122 304 -5 318 264 58 19 chrX 102923135 102923290 -74050850 + L1ME4a LINE L1 5961 6121 0 227 257 224 46 chrX 102923469 102923621 -74050519 + MIR SINE MIR 33 211 -51 264 122 0 0 chrX 102923873 102923914 -74050226 + (CA)n Simple_repeat Simple_repeat 2 42 0 209 98 24 0 chrX 102923964 102924005 -74050135 + (TA)n Simple_repeat Simple_repeat 2 43 0 707 99 0 0 chrX 102924010 102924101 -74050039 - FLAM_A SINE Alu -26 116 26 301 179 11 105 chrX 102924256 102924351 -74049789 - MER103 DNA DNA -2 164 79 2150 89 29 4 chrX 102924352 102924632 -74049508 + AluSx SINE Alu 1 287 -25 243 0 0 0 chrX 102924641 102924668 -74049472 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 229 227 82 72 chrX 102925003 102925100 -74049040 - MIR3 SINE MIR -15 193 96 189 322 68 0 chrX 102925359 102925418 -74048722 - MIR SINE MIR -99 109 47 472 312 78 0 chrX 102925461 102925615 -74048525 + LTR33 LTR ERVL 32 197 -324 265 302 60 0 chrX 102925653 102925769 -74048371 + LTR33A LTR ERVL 277 399 -124 4664 177 26 12 chrX 102926072 102927433 -74046707 - L1MB2 LINE L1 0 6171 4783 348 323 126 0 chrX 102927770 102927937 -74046203 + MIR SINE MIR 66 253 -9 216 298 24 36 chrX 102929005 102929089 -74045051 - MER5B DNA MER1_type -43 135 53 295 324 37 0 chrX 102929206 102929314 -74044826 + L2 LINE L2 2941 3052 -220 1311 249 12 51 chrX 102929418 102929831 -74044309 + Charlie7 DNA MER1_type 185 581 -2031 616 208 33 76 chrX 102929840 102930143 -74043997 + Charlie7 DNA MER1_type 2191 2480 -132 197 151 41 14 chrX 102930186 102930259 -74043881 + (TA)n Simple_repeat Simple_repeat 1 75 0 757 321 5 10 chrX 102930521 102930717 -74043423 - MER91A DNA MER1_type -1 195 1 253 192 0 19 chrX 102930742 102930794 -74043346 - MER5B DNA MER1_type -127 51 1 594 241 8 15 chrX 102930940 102931073 -74043067 + MIR3 SINE MIR 73 204 -4 316 265 29 0 chrX 102931756 102931824 -74042316 + MIR SINE MIR 76 145 -63 486 236 20 54 chrX 102932220 102932368 -74041772 - MER5A DNA MER1_type 0 189 47 298 271 43 0 chrX 102933107 102933177 -74040963 - MIR3 SINE MIR -47 161 89 861 215 122 25 chrX 102933248 102933485 -74040655 - MIR SINE MIR -2 260 1 188 311 0 0 chrX 102936944 102936989 -74037151 + L2 LINE L2 3263 3307 -6 1301 83 0 11 chrX 102938236 102938417 -74035723 - AluY SINE Alu 0 311 133 212 258 227 31 chrX 102938683 102938780 -74035360 - MIR SINE MIR -67 195 80 2417 62 3 16 chrX 102939251 102939558 -74034582 + AluY SINE Alu 1 303 -8 601 264 48 52 chrX 102939633 102939883 -74034257 + L2 LINE L2 2252 2500 -814 1592 170 75 3 chrX 102940067 102940349 -74033791 + AluSx SINE Alu 1 302 -10 267 295 145 34 chrX 102940455 102940662 -74033478 + L2 LINE L2 2871 3100 -172 207 286 0 83 chrX 102940805 102940889 -74033251 - L2 LINE L2 -43 3229 3153 945 275 20 24 chrX 102940979 102941226 -74032914 + MIR SINE MIR 3 248 -14 437 281 30 30 chrX 102942341 102942505 -74031635 - MIR SINE MIR -5 257 94 257 351 97 8 chrX 102943166 102943300 -74030840 + MIR3 SINE MIR 5 150 -58 355 259 12 0 chrX 102943399 102943484 -74030656 - MIR SINE MIR -128 134 49 713 252 131 9 chrX 102943542 102943756 -74030384 - MIR SINE MIR -16 246 7 431 295 0 0 chrX 102945352 102945457 -74028683 - MIR SINE MIR 0 262 158 1355 142 17 113 chrX 102945466 102945807 -74028333 + AluJb SINE Alu 12 323 0 478 268 85 33 chrX 102945807 102945960 -74028180 - MIR SINE MIR -86 176 16 1341 212 62 3 chrX 102945961 102946282 -74027858 - MER58B DNA MER1_type -1 340 1 276 337 45 35 chrX 102946333 102946532 -74027608 + L2 LINE L2 1962 2162 -1152 881 285 28 20 chrX 102946577 102946830 -74027310 + MIR SINE MIR 7 261 -1 550 300 29 0 chrX 102946853 102947023 -74027117 + L2 LINE L2 2218 2392 -922 208 0 0 0 chrX 102947719 102947742 -74026398 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 2247 108 0 0 chrX 102947742 102948028 -74026112 - AluSx SINE Alu -26 286 1 509 230 25 62 chrX 102948436 102948597 -74025543 - MIR SINE MIR 0 262 108 29 0 0 0 chrX 102948742 102948771 -74025369 + AT_rich Low_complexity Low_complexity 1 29 0 536 83 0 0 chrX 102948771 102948843 -74025297 + L1PA5 LINE L1 5830 5901 -253 184 236 77 99 chrX 102948843 102949076 -74025064 + L2 LINE L2 2608 2835 -479 549 282 14 14 chrX 102949709 102949876 -74024264 + MIR SINE MIR 16 180 -63 1724 218 88 62 chrX 102949922 102950532 -74023608 + MLT1E2 LTR MaLR 1 626 0 529 218 137 46 chrX 102951476 102951673 -74022467 - MIR SINE MIR -13 249 35 21 0 0 0 chrX 102951793 102951814 -74022326 + AT_rich Low_complexity Low_complexity 1 21 0 475 280 153 0 chrX 102951903 102952060 -74022080 - MER5A DNA MER1_type 0 189 9 195 162 0 0 chrX 102952363 102952400 -74021740 + (TG)n Simple_repeat Simple_repeat 2 38 0 372 326 61 30 chrX 102952868 102953000 -74021140 + MIR3 SINE MIR 40 175 -33 420 20 0 0 chrX 102954850 102954899 -74019241 + (CA)n Simple_repeat Simple_repeat 2 50 0 263 214 14 0 chrX 102956808 102956878 -74017262 + GA-rich Low_complexity Low_complexity 1 71 0 225 0 0 0 chrX 102957233 102957258 -74016882 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 537 16 0 0 chrX 102957257 102957319 -74016821 + (GA)n Simple_repeat Simple_repeat 1 62 0 227 224 52 0 chrX 102957396 102957454 -74016686 + (CGGGG)n Simple_repeat Simple_repeat 2 62 0 1173 153 10 5 chrX 102959966 102960169 -74013971 - MER20 DNA MER1_type 0 219 16 21 0 0 0 chrX 102961252 102961273 -74012867 + AT_rich Low_complexity Low_complexity 1 21 0 486 306 153 0 chrX 102962094 102962316 -74011824 + MIR SINE MIR 1 256 -6 9648 220 27 31 chrX 102962338 102962475 -74011665 - L1MB5 LINE L1 -1 6409 6273 781 158 0 8 chrX 102962475 102962608 -74011532 - FLAM_C SINE Alu 0 133 2 9648 220 27 31 chrX 102962608 102963569 -74010571 - L1MB5 LINE L1 -137 6273 5310 1218 53 0 0 chrX 102963569 102963721 -74010419 - L1PA3 LINE L1 0 6155 6004 9648 220 27 31 chrX 102963721 102966785 -74007355 - L1MB5 LINE L1 -1100 5310 2261 2179 120 45 28 chrX 102967050 102967408 -74006732 + THE1B LTR MaLR 1 364 0 217 374 108 30 chrX 102967446 102967751 -74006389 + L2 LINE L2 2414 2742 -572 3281 333 116 31 chrX 102967971 102970499 -74003641 - L2 LINE L2 -1 3271 530 811 276 32 18 chrX 102970503 102970720 -74003420 + MIR SINE MIR 21 240 -22 295 229 0 16 chrX 102971618 102971679 -74002461 - L2 LINE L2 -64 3249 3190 1706 191 0 0 chrX 102971812 102972085 -74002055 + AluJb SINE Alu 1 273 -39 6627 27 0 0 chrX 102972419 102973226 -74000914 - L1PA4 LINE L1 -2 6153 5347 3703 32 0 0 chrX 102973220 102973694 -74000446 + L1PA4 LINE L1 4869 5342 -804 * 500 324 103 75 chrX 102973694 102974556 -73999584 - L2 LINE L2 -94 3178 2265 436 287 92 6 chrX 102974597 102974761 -73999379 - L2 LINE L2 -1339 1975 1798 327 359 53 10 chrX 102974794 102975003 -73999137 + L1M4 LINE L1 2338 2555 -3591 410 254 0 32 chrX 102975003 102975129 -73999011 - MLT1J LTR MaLR 0 511 390 635 230 31 28 chrX 102975163 102975408 -73998732 - MLT1J LTR MaLR -220 291 4 409 326 61 50 chrX 102975417 102975858 -73998282 + L1M4 LINE L1 2558 3003 -3143 1188 234 93 35 chrX 102976123 102976555 -73997585 + MLT1C LTR MaLR 11 467 0 320 234 206 0 chrX 102976605 102976712 -73997428 - MIR SINE MIR -44 218 90 6213 83 37 5 chrX 102977108 102978049 -73996091 + L1PA11 LINE L1 5203 6172 -2 23 0 0 0 chrX 102978194 102978217 -73995923 + AT_rich Low_complexity Low_complexity 1 23 0 8299 167 30 8 chrX 102978217 102980918 -73993222 - L1MA8 LINE L1 0 7251 4488 2268 144 24 14 chrX 102980930 102981540 -73992600 - L1M1 LINE L1 -594 5706 5088 3128 257 49 37 chrX 102981551 102983691 -73990449 - L1MA8 LINE L1 -4177 2929 20 681 121 0 0 chrX 102983691 102983790 -73990350 - LTR12 LTR ERV1 -1 713 615 329 229 31 0 chrX 102983797 102983893 -73990247 - LTR30 LTR ERV1 -82 640 542 1454 98 3 136 chrX 102983894 102984210 -73989930 - LTR12 LTR ERV1 -440 274 1 5161 111 7 0 chrX 102984210 102984979 -73989161 - HERV9 LTR ERV1 0 8399 7626 2069 168 95 89 chrX 102984977 102985871 -73988269 - Harlequin LTR ERV1 -5156 1740 842 * 26445 108 7 11 chrX 102985870 102990707 -73983433 - Harlequin LTR ERV1 -3451 4948 55 749 123 45 66 chrX 102990682 102990848 -73983292 - pTR5 LTR ERV1 -231 483 299 * 351 176 0 0 chrX 102990848 102990922 -73983218 - LTR30 LTR ERV1 -98 624 551 1541 116 3 100 chrX 102990922 102991233 -73982907 - LTR12 LTR ERV1 -430 284 4 729 284 83 44 chrX 102991886 102992553 -73981587 + L1ME4a LINE L1 5217 5935 -186 1897 211 19 85 chrX 102992553 102993132 -73981008 - MLT1F LTR MaLR 0 542 2 729 284 83 44 chrX 102993132 102993307 -73980833 + L1ME4a LINE L1 5935 6102 -19 1395 123 163 56 chrX 102993345 102993596 -73980544 - AluSx SINE Alu -14 298 21 317 274 94 35 chrX 102993637 102993838 -73980302 - L2 LINE L2 -1504 1810 1598 2412 71 0 3 chrX 102994726 102995035 -73979105 - AluY SINE Alu -3 308 1 1318 77 0 6 chrX 102995430 102995612 -73978528 + L1PA13 LINE L1 5978 6158 -5 567 283 41 70 chrX 102995970 102996553 -73977587 + L1M4 LINE L1 3564 4129 -2017 * 3286 93 18 27 chrX 102996550 102997107 -73977033 + L1MA2 LINE L1 5654 6205 -99 28 61 0 0 chrX 102997327 102997376 -73976764 + AT_rich Low_complexity Low_complexity 1 49 0 2408 111 6 0 chrX 102997868 102998219 -73975921 - L1PA8A LINE L1 -1088 5058 4706 6454 68 37 15 chrX 102998217 102999266 -73974874 + L1PA8A LINE L1 5063 6131 0 1829 111 15 26 chrX 102999354 102999649 -73974491 - AluSx SINE Alu 0 307 16 278 275 0 0 chrX 103000778 103000847 -73973293 + L1MEd LINE L1 604 672 -5447 * 7800 218 47 27 chrX 103000841 103002840 -73971300 + L1M4 LINE L1 2944 4994 -1152 2220 101 20 0 chrX 103002840 103003146 -73970994 + AluSx SINE Alu 1 312 0 7800 218 47 27 chrX 103003146 103003359 -73970781 + L1M4 LINE L1 4994 5201 -945 214 300 12 38 chrX 103003360 103003440 -73970700 - MIR SINE MIR -156 106 29 849 250 146 37 chrX 103003779 103004107 -73970033 + L2 LINE L2 2950 3313 0 187 216 0 0 chrX 103004844 103004881 -73969259 + L2 LINE L2 3226 3262 -10 1709 188 0 0 chrX 103005113 103005395 -73968745 + AluJo SINE Alu 1 282 -30 247 150 33 0 chrX 103005404 103005464 -73968676 + (TAAA)n Simple_repeat Simple_repeat 4 65 0 227 305 49 89 chrX 103006393 103006639 -73967501 + L2 LINE L2 2856 3091 -181 310 277 40 30 chrX 103006696 103006797 -73967343 + MIR SINE MIR 41 142 -120 623 265 137 18 chrX 103006817 103006881 -73967259 - MIR SINE MIR -2 260 205 1794 154 2 134 chrX 103006881 103007028 -73967112 + MER2 DNA MER2_type 1 166 -178 1751 181 0 28 chrX 103007028 103007220 -73966920 - AluJo SINE Alu 0 312 131 2501 66 0 0 chrX 103007220 103007522 -73966618 + AluY SINE Alu 9 310 -1 1751 181 0 28 chrX 103007522 103007650 -73966490 - AluJo SINE Alu -181 131 1 1794 154 2 134 chrX 103007650 103007897 -73966243 + MER2 DNA MER2_type 166 343 -1 623 265 137 18 chrX 103007897 103008051 -73966089 - MIR SINE MIR -57 205 16 212 222 16 79 chrX 103008067 103008130 -73966010 + MIR SINE MIR 189 247 -15 306 324 189 0 chrX 103008152 103008263 -73965877 + L2 LINE L2 3137 3268 -4 312 277 142 28 chrX 103008445 103008586 -73965554 + L3 LINE CR1 470 626 -951 828 295 29 12 chrX 103008673 103008914 -73965226 + MIR SINE MIR 15 259 -3 2100 141 0 0 chrX 103009035 103009334 -73964806 - AluSx SINE Alu -13 299 1 405 81 0 0 chrX 103009342 103009404 -73964736 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 311 203 13 0 chrX 103009397 103009476 -73964664 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 * 2122 112 0 0 chrX 103009476 103009761 -73964379 - AluSx SINE Alu -27 285 1 927 263 116 7 chrX 103009882 103010183 -73963957 + L3 LINE CR1 635 968 -609 1005 189 16 11 chrX 103010290 103010481 -73963659 + L1MD2 LINE L1 6158 6349 -10 376 337 73 61 chrX 103010740 103011197 -73962943 - L2 LINE L2 -221 3051 2578 438 20 0 0 chrX 103011197 103011248 -73962892 + (TG)n Simple_repeat Simple_repeat 1 51 0 376 337 73 61 chrX 103011248 103011559 -73962581 - L2 LINE L2 -694 2578 2272 2370 92 3 16 chrX 103011772 103012088 -73962052 - AluSp SINE Alu -1 312 1 2117 121 0 0 chrX 103012279 103012561 -73961579 + AluSx SINE Alu 1 282 -30 189 74 0 0 chrX 103012561 103012588 -73961552 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 234 0 0 0 chrX 103013376 103013402 -73960738 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chrX 103014395 103014418 -73959722 + AT_rich Low_complexity Low_complexity 1 23 0 456 231 60 49 chrX 103016167 103016321 -73957819 - MIR SINE MIR -67 141 16 609 253 183 32 chrX 103016683 103016869 -73957271 - MER58B DNA MER1_type -1 340 1 406 280 16 24 chrX 103017086 103017211 -73956929 - MIR3 SINE MIR -48 160 37 324 0 0 0 chrX 103018834 103018870 -73955270 + (TG)n Simple_repeat Simple_repeat 2 37 0 537 311 71 40 chrX 103019034 103019356 -73954784 + L3 LINE CR1 1173 1504 -73 423 256 277 0 chrX 103020383 103020520 -73953620 - MER5A DNA MER1_type -6 183 9 22 0 0 0 chrX 103021639 103021661 -73952479 + AT_rich Low_complexity Low_complexity 1 22 0 420 245 19 19 chrX 103021728 103021834 -73952306 + MER5B DNA MER1_type 3 108 -70 749 214 92 15 chrX 103022529 103022725 -73951415 + MLT1J2 LTR MaLR 16 226 -224 574 263 46 110 chrX 103023160 103023532 -73950608 - L2 LINE L2 -107 3165 2818 1744 154 14 0 chrX 103023583 103023899 -73950241 + AluSx SINE Alu 1 320 0 1843 123 0 11 chrX 103023899 103024160 -73949980 + AluSx SINE Alu 43 300 -12 851 225 59 5 chrX 103024251 103024438 -73949702 + MIR SINE MIR 61 257 -5 853 288 60 48 chrX 103024455 103024875 -73949265 - L2 LINE L2 -589 2725 2301 1021 178 137 0 chrX 103024906 103025103 -73949037 - MER58A DNA MER1_type 0 224 1 3961 105 54 4 chrX 103025719 103026271 -73947869 - LTR19B LTR ERV1 0 580 1 1213 92 6 6 chrX 103026272 103026435 -73947705 - HERVFH19I LTR ERV1 -1 7718 7556 580 122 68 95 chrX 103026439 103026586 -73947554 - HUERS-P3b LTR ERV1 -726 4860 4718 * 8266 198 41 47 chrX 103026581 103027223 -73946917 - HUERS-P3b LTR ERV1 -662 6440 5796 2347 49 3 3 chrX 103027223 103027531 -73946609 - AluY SINE Alu 0 308 1 8266 198 41 47 chrX 103027531 103028931 -73945209 - HUERS-P3b LTR ERV1 -1306 5796 4440 1243 198 52 0 chrX 103029823 103030071 -73944069 - L1M4 LINE L1 -1043 5601 5341 3512 202 19 35 chrX 103030082 103030327 -73943813 - L1M4 LINE L1 -1575 5069 4822 1609 149 177 39 chrX 103030327 103030763 -73943377 - LTR54B LTR ERV1 -2 496 1 3512 202 19 35 chrX 103030763 103031307 -73942833 - L1M4 LINE L1 -1822 4822 4291 2398 76 0 7 chrX 103031307 103031611 -73942529 - AluY SINE Alu -9 302 1 3512 202 19 35 chrX 103031611 103031655 -73942485 - L1M4 LINE L1 -2353 4291 4248 1869 234 57 40 chrX 103031652 103032177 -73941963 - L1M4 LINE L1 -5995 547 14 * 1585 153 25 92 chrX 103032318 103032644 -73941496 - AluSx SINE Alu -8 304 1 2339 81 7 3 chrX 103032653 103032949 -73941191 - AluSc SINE Alu -12 297 1 364 330 0 19 chrX 103032979 103033082 -73941058 + L2 LINE L2 3170 3270 -2 435 276 182 10 chrX 103033239 103033442 -73940698 - MIR SINE MIR -17 245 8 183 219 67 67 chrX 103034254 103034359 -73939781 - L2 LINE L2 -9 3263 3159 449 209 157 0 chrX 103035254 103035369 -73938771 - MIR SINE MIR -29 233 101 191 213 16 82 chrX 103035371 103035432 -73938708 - MIR SINE MIR 0 262 206 1275 214 3 53 chrX 103037513 103037656 -73936484 - MER46C DNA MER2_type -2 336 187 1015 144 21 11 chrX 103037656 103037843 -73936297 + MER53 DNA DNA 1 189 0 1275 214 3 53 chrX 103037843 103038021 -73936119 - MER46C DNA MER2_type -151 187 31 287 81 0 0 chrX 103038018 103038055 -73936085 - U1 snRNA snRNA -128 37 1 * 207 337 83 62 chrX 103038409 103038602 -73935538 + MIR SINE MIR 20 216 -46 830 206 81 40 chrX 103038706 103038929 -73935211 + MIR SINE MIR 7 238 -24 2679 149 38 7 chrX 103039090 103039533 -73934607 + MSTB2 LTR MaLR 1 457 0 5312 134 21 5 chrX 103040014 103040824 -73933316 + L1PA16 LINE L1 5327 6152 -14 2275 112 0 3 chrX 103040824 103041129 -73933011 + AluSq SINE Alu 1 304 -9 5312 134 21 5 chrX 103041129 103041143 -73932997 + L1PA16 LINE L1 6152 6164 -2 302 228 0 0 chrX 103041444 103041501 -73932639 - L2 LINE L2 -16 3256 3200 527 249 191 53 chrX 103041870 103042055 -73932085 - MIR SINE MIR -24 238 19 1058 229 57 0 chrX 103042055 103042265 -73931875 + MER58A DNA MER1_type 3 224 0 527 249 191 53 chrX 103042265 103042288 -73931852 - MIR SINE MIR -243 19 1 932 206 26 44 chrX 103042305 103042533 -73931607 + MIR SINE MIR 34 257 -5 279 79 0 0 chrX 103042879 103042917 -73931223 + (T)n Simple_repeat Simple_repeat 1 38 0 220 125 25 0 chrX 103043211 103043251 -73930889 + (TG)n Simple_repeat Simple_repeat 2 42 0 310 331 53 79 chrX 103044352 103044618 -73929522 - L2 LINE L2 -594 2720 2462 433 230 46 0 chrX 103044724 103044811 -73929329 + MER81 DNA DNA 4 94 -20 195 328 0 0 chrX 103045424 103045485 -73928655 + L2 LINE L2 3004 3064 -208 432 104 65 0 chrX 103045499 103045576 -73928564 + L1MA7 LINE L1 6210 6291 0 200 365 0 14 chrX 103045701 103045775 -73928365 + L2 LINE L2 3138 3210 -62 910 232 26 0 chrX 103045829 103046019 -73928121 - MER20 DNA MER1_type 0 219 25 555 244 53 62 chrX 103046992 103047201 -73926939 - MIR SINE MIR -49 213 7 492 287 8 8 chrX 103047562 103047684 -73926456 + L2 LINE L2 3192 3313 0 2152 123 0 10 chrX 103048432 103048459 -73925681 - AluSc SINE Alu -3 306 280 438 34 17 0 chrX 103048459 103048518 -73925622 + (TTTTA)n Simple_repeat Simple_repeat 2 155 0 2152 123 0 10 chrX 103048518 103048799 -73925341 - AluSc SINE Alu -29 280 1 2353 103 0 0 chrX 103050127 103050428 -73923712 + AluSx SINE Alu 1 301 -11 464 277 27 9 chrX 103052745 103052857 -73921283 - MER81 DNA DNA 0 114 1 22 0 0 0 chrX 103052866 103052888 -73921252 + AT_rich Low_complexity Low_complexity 1 22 0 202 291 179 17 chrX 103053180 103053297 -73920843 - MIR SINE MIR -105 157 22 2183 110 7 0 chrX 103053322 103053614 -73920526 + AluSq SINE Alu 2 295 -18 372 256 84 79 chrX 103054870 103055073 -73919067 + MIR SINE MIR 59 262 0 1881 268 123 49 chrX 103055088 103055716 -73918424 - L2 LINE L2 -6 3307 2727 2299 82 0 63 chrX 103055716 103056047 -73918093 + AluSg SINE Alu 1 310 0 1881 268 123 49 chrX 103056047 103056563 -73917577 - L2 LINE L2 -586 2727 2091 307 232 14 0 chrX 103056563 103056632 -73917508 - L2 LINE L2 -1380 1934 1865 1902 141 35 49 chrX 103057355 103057561 -73916579 - MER2 DNA MER2_type 0 345 145 1303 97 163 5 chrX 103057561 103057757 -73916383 - MER30 DNA MER1_type 0 230 4 1902 141 35 49 chrX 103057757 103057897 -73916243 - MER2 DNA MER2_type -200 145 4 21 0 0 0 chrX 103058020 103058041 -73916099 + AT_rich Low_complexity Low_complexity 1 21 0 5440 81 7 3 chrX 103058041 103058730 -73915410 - L1PA13 LINE L1 -7 6156 5465 437 261 52 33 chrX 103058738 103058855 -73915285 + MIR SINE MIR 51 173 -89 2220 102 0 25 chrX 103058855 103059170 -73914970 - AluSg SINE Alu -3 307 1 437 261 52 33 chrX 103059170 103059205 -73914935 + MIR SINE MIR 173 206 -56 228 342 35 9 chrX 103059208 103059322 -73914818 + L3b LINE CR1 1366 1482 -101 535 306 175 0 chrX 103060219 103060402 -73913738 - MIR SINE MIR -1 261 47 1802 223 51 23 chrX 103062057 103063021 -73911119 - L1ME3 LINE L1 0 6162 4957 555 231 46 6 chrX 103063024 103063197 -73910943 - L1ME3 LINE L1 -1337 4809 4630 509 243 138 48 chrX 103064090 103064241 -73909899 + MIR SINE MIR 23 200 -62 1836 138 128 0 chrX 103064241 103064561 -73909579 + MER46B DNA MER2_type 1 236 0 509 243 138 48 chrX 103064561 103064619 -73909521 + MIR SINE MIR 200 251 -11 3865 190 36 59 chrX 103064701 103065575 -73908565 - L1ME2 LINE L1 0 6164 5326 234 0 0 0 chrX 103065575 103065601 -73908539 + (TA)n Simple_repeat Simple_repeat 1 26 0 3865 190 36 59 chrX 103065601 103065756 -73908384 - L1ME2 LINE L1 -838 5326 5169 192 254 155 0 chrX 103065756 103065827 -73908313 + L2 LINE L2 3230 3311 -2 520 328 51 69 chrX 103065862 103066252 -73907888 - L2 LINE L2 -1 3312 2930 180 282 165 68 chrX 103071394 103071600 -73902540 + MIR SINE MIR 3 228 -34 3686 76 11 11 chrX 103071650 103072125 -73902015 + L1PA10 LINE L1 5686 6160 -8 330 26 0 0 chrX 103072668 103072707 -73901433 + (CCAA)n Simple_repeat Simple_repeat 2 40 0 2626 55 0 3 chrX 103072956 103073268 -73900872 + AluY SINE Alu 1 311 0 2088 118 7 3 chrX 103073396 103073700 -73900440 + AluSq SINE Alu 1 305 -8 2119 122 7 0 chrX 103074673 103074969 -73899171 + AluSx SINE Alu 6 303 -9 814 152 0 97 chrX 103076178 103076323 -73897817 + AluJo/FLAM SINE Alu 1 131 -171 1416 142 21 142 chrX 103076325 103076695 -73897445 + AluYb8 SINE Alu 1 330 0 657 138 28 0 chrX 103076798 103076907 -73897233 + L1MB4 LINE L1 6068 6179 -1 2202 110 0 0 chrX 103077864 103078155 -73895985 - AluSx SINE Alu -21 291 1 485 271 136 20 chrX 103078617 103078816 -73895324 - MIR SINE MIR -21 241 20 384 246 236 0 chrX 103079289 103079399 -73894741 + L2 LINE L2 3137 3272 0 1003 240 77 0 chrX 103080278 103080499 -73893641 - MIR SINE MIR -4 258 21 2490 63 0 0 chrX 103081003 103081303 -73892837 + AluY SINE Alu 2 301 -10 227 79 26 0 chrX 103082367 103082405 -73891735 + (TC)n Simple_repeat Simple_repeat 1 39 0 204 225 0 0 chrX 103082420 103082460 -73891680 + CT-rich Low_complexity Low_complexity 4 43 0 395 257 71 44 chrX 103082988 103083101 -73891039 + L2 LINE L2 3137 3252 -20 1925 153 13 16 chrX 103083147 103083267 -73890873 + AluJb SINE Alu 1 120 -192 207 0 0 0 chrX 103083267 103083290 -73890850 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1925 153 13 16 chrX 103083290 103083482 -73890658 + AluJb SINE Alu 120 312 0 677 262 114 8 chrX 103083967 103084204 -73889936 - Charlie8 DNA MER1_type -2152 265 4 579 324 183 19 chrX 103084233 103084402 -73889738 - L2 LINE L2 -459 2855 2715 1081 206 5 33 chrX 103084402 103084616 -73889524 + MER63A DNA MER1_type 1 208 -2 579 324 183 19 chrX 103084616 103085024 -73889116 - L2 LINE L2 -599 2715 2183 702 322 115 53 chrX 103085361 103086376 -73887764 - L2 LINE L2 -1654 1660 583 236 250 0 0 chrX 103086429 103086481 -73887659 + LTR30 LTR ERV1 1 52 -670 733 103 0 131 chrX 103086494 103086639 -73887501 + LTR12 LTR ERV1 132 257 -457 380 135 22 18 chrX 103086639 103086731 -73887409 + LTR30 LTR ERV1 552 614 -108 709 219 23 0 chrX 103086734 103086862 -73887278 + LTR12 LTR ERV1 352 482 -232 272 277 94 75 chrX 103086904 103087022 -73887118 + MIR SINE MIR 100 223 -39 1724 98 31 9 chrX 103087022 103087247 -73886893 + MER30 DNA MER1_type 1 230 0 272 277 94 75 chrX 103087247 103087287 -73886853 + MIR SINE MIR 223 261 -1 2365 96 0 0 chrX 103087316 103087617 -73886523 + AluSx SINE Alu 1 301 -11 708 217 43 109 chrX 103088451 103088681 -73885459 - MER58A DNA MER1_type -9 215 1 532 149 18 44 chrX 103088686 103088800 -73885340 + LTR37A LTR ERV1 316 426 0 884 242 39 17 chrX 103090232 103090463 -73883677 - MIR SINE MIR -18 244 9 208 328 0 16 chrX 103092485 103092546 -73881594 + L3b LINE CR1 1303 1362 -221 211 326 51 20 chrX 103093089 103093187 -73880953 + L3b LINE CR1 1401 1501 -82 1032 201 10 24 chrX 103093200 103093409 -73880731 - MER20 DNA MER1_type -5 214 9 696 218 128 21 chrX 103093671 103093859 -73880281 - MER3 DNA MER1_type -1 208 1 830 296 75 8 chrX 103093928 103094168 -73879972 - MIR SINE MIR -3 259 4 978 187 14 38 chrX 103094410 103094619 -73879521 - MER20 DNA MER1_type 0 219 16 262 340 90 27 chrX 103096997 103097185 -73876955 - MIR SINE MIR -13 249 50 379 272 117 0 chrX 103097237 103097340 -73876800 - L3 LINE CR1 -10 1567 1453 1478 159 0 115 chrX 103097489 103097660 -73876480 + AluJo SINE Alu 1 115 -197 866 61 17 17 chrX 103097660 103097775 -73876365 + L1PA7 LINE L1 6039 6153 -1 1478 159 0 115 chrX 103097775 103097943 -73876197 + AluJo SINE Alu 115 301 -11 755 296 5 5 chrX 103099064 103099270 -73874870 + MIR SINE MIR 57 262 0 793 153 41 24 chrX 103099550 103099720 -73874420 + L1MA10 LINE L1 6159 6331 -3 192 97 0 0 chrX 103100890 103100921 -73873219 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 31 0 0 0 chrX 103101185 103101216 -73872924 + AT_rich Low_complexity Low_complexity 1 31 0 458 88 38 0 chrX 103101216 103101296 -73872844 - L1MA6 LINE L1 0 6300 6218 1231 210 41 0 chrX 103101301 103101553 -73872587 - L1 LINE L1 -839 5307 5038 252 59 0 0 chrX 103101553 103101587 -73872553 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1231 210 41 0 chrX 103101587 103101648 -73872492 - L1 LINE L1 -1108 5038 4981 11472 163 23 11 chrX 103101653 103103667 -73870473 - L1MA3 LINE L1 0 7367 5286 14510 24 0 1 chrX 103103667 103106136 -73868004 - L1PA3 LINE L1 0 6155 3687 11472 163 23 11 chrX 103106136 103107595 -73866545 - L1MA3 LINE L1 -2081 5286 3847 261 167 74 0 chrX 103107596 103107650 -73866490 - AluS SINE Alu -24 278 221 * 3108 177 59 21 chrX 103107638 103107732 -73866408 + MER49 LTR ERV1 212 301 -622 2321 94 0 3 chrX 103107732 103108040 -73866100 + AluY SINE Alu 1 307 -4 3108 177 59 21 chrX 103108040 103108622 -73865518 + MER49 LTR ERV1 301 914 -9 741 258 33 5 chrX 103108626 103108839 -73865301 - L1MA3 LINE L1 -5252 1957 1739 1865 256 80 38 chrX 103108870 103109564 -73864576 - L1MA3 LINE L1 -6134 1075 2 255 311 0 0 chrX 103110146 103110220 -73863920 - MIR SINE MIR -108 154 81 737 303 16 1 chrX 103110336 103110571 -73863569 - MIR SINE MIR 0 262 21 440 245 34 27 chrX 103111340 103111485 -73862655 - MIR SINE MIR -60 202 62 333 0 0 0 chrX 103111591 103111628 -73862512 + (TG)n Simple_repeat Simple_repeat 1 37 0 324 0 0 0 chrX 103111627 103111663 -73862477 + (GA)n Simple_repeat Simple_repeat 1 36 0 * 1790 167 37 83 chrX 103111822 103112306 -73861834 + MLT1C LTR MaLR 6 467 0 347 241 28 28 chrX 103112340 103112448 -73861692 - MER5A DNA MER1_type -37 152 45 263 241 0 0 chrX 103112792 103112846 -73861294 + (CA)n Simple_repeat Simple_repeat 2 55 0 223 279 13 63 chrX 103113998 103114077 -73860063 - L2 LINE L2 -1 3271 3197 810 289 12 35 chrX 103114529 103114649 -73859491 + MIR SINE MIR 2 123 -139 1943 144 26 10 chrX 103114649 103114955 -73859185 - AluSx SINE Alu -1 311 1 810 289 12 35 chrX 103114955 103115090 -73859050 + MIR SINE MIR 123 251 -11 348 296 23 30 chrX 103115073 103115205 -73858935 - L2 LINE L2 0 3313 3183 * 300 248 31 39 chrX 103115312 103115441 -73858699 - L1M4 LINE L1 -3104 3042 2915 1563 182 86 35 chrX 103115700 103115774 -73858366 + LTR48 LTR ERV1 1 70 -717 2212 112 3 3 chrX 103115774 103116078 -73858062 + AluSx SINE Alu 2 305 -7 1563 182 86 35 chrX 103116078 103116399 -73857741 + LTR48 LTR ERV1 70 416 -371 5833 123 0 21 chrX 103116405 103117366 -73856774 + L1PB1 LINE L1 4885 5816 -335 2425 71 0 3 chrX 103117366 103117663 -73856477 + AluY SINE Alu 1 296 -15 5833 123 0 21 chrX 103117663 103117986 -73856154 + L1PB1 LINE L1 5816 6144 -7 888 167 63 36 chrX 103118074 103118295 -73855845 + LTR48 LTR ERV1 544 770 -17 334 337 29 45 chrX 103118405 103118462 -73855678 - L2 LINE L2 -652 2662 2606 1012 144 86 6 chrX 103118462 103118636 -73855504 - MER5A DNA MER1_type 0 189 2 334 337 29 45 chrX 103118636 103118821 -73855319 - L2 LINE L2 -708 2606 2424 484 280 51 8 chrX 103119906 103120024 -73854116 + MIR SINE MIR 3 125 -137 208 205 0 0 chrX 103120081 103120120 -73854020 - L2 LINE L2 -18 3254 3216 260 232 146 0 chrX 103120121 103120203 -73853937 + MIR SINE MIR 149 242 -20 220 302 105 0 chrX 103120794 103120880 -73853260 - MIR SINE MIR -56 206 112 249 136 127 127 chrX 103121586 103121704 -73852436 - L2 LINE L2 0 3272 3155 270 176 0 39 chrX 103122174 103122225 -73851915 - L2 LINE L2 -31 3241 3193 189 292 0 62 chrX 103122341 103122406 -73851734 - L2 LINE L2 -19 3294 3234 1148 313 106 17 chrX 103124062 103124545 -73849595 - L3 LINE CR1 -24 1553 1028 862 260 49 22 chrX 103124726 103124949 -73849191 - MIR SINE MIR -21 241 13 609 350 17 53 chrX 103125021 103125381 -73848759 - L2 LINE L2 -5 3267 2921 656 289 97 58 chrX 103125408 103125819 -73848321 + L2 LINE L2 2879 3305 -8 1807 208 66 12 chrX 103126013 103126878 -73847262 + L1M4c LINE L1 1356 2362 -4022 267 238 325 8 chrX 103127056 103127182 -73846958 - MER5B DNA MER1_type 0 178 13 222 333 12 12 chrX 103127254 103127301 -73846839 + L3 LINE CR1 1482 1531 -46 1131 174 41 0 chrX 103127301 103127497 -73846643 - MER3 DNA MER1_type -3 206 3 222 333 12 12 chrX 103127497 103127530 -73846610 + L3 LINE CR1 1530 1562 -15 41 0 0 0 chrX 103128114 103128155 -73845985 + AT_rich Low_complexity Low_complexity 1 41 0 2038 122 25 0 chrX 103128155 103128433 -73845707 - AluSg SINE Alu -25 285 1 553 160 0 0 chrX 103128448 103128548 -73845592 + L1MC4 LINE L1 7943 8042 0 489 300 11 43 chrX 103128853 103129130 -73845010 - L1ME LINE L1 -307 5814 5547 1568 180 82 8 chrX 103129183 103129561 -73844579 + L1PB4 LINE L1 5751 6156 0 214 188 141 35 chrX 103129581 103129666 -73844474 + MIR3 SINE MIR 115 208 0 2590 93 10 3 chrX 103129774 103130162 -73843978 + Tigger1 DNA MER2_type 1698 2088 -330 42001 40 2 1 chrX 103130162 103136385 -73837755 + L1PA4 LINE L1 1 6226 0 1986 114 38 38 chrX 103136385 103136726 -73837414 + Tigger1 DNA MER2_type 2078 2418 0 237 325 43 64 chrX 103137295 103137483 -73836657 - L2 LINE L2 -731 2583 2400 617 226 18 77 chrX 103138020 103138099 -73836041 + MIR3 SINE MIR 33 98 -110 2448 30 7 30 chrX 103138099 103138401 -73835739 - AluY SINE Alu -16 295 1 617 226 18 77 chrX 103138401 103138489 -73835651 + MIR3 SINE MIR 98 190 -18 926 187 28 13 chrX 103140947 103141363 -73832777 - MER63C DNA MER1_type 0 930 461 924 308 99 9 chrX 103141368 103141712 -73832428 + L1MEc LINE L1 36 410 -5986 3070 223 43 63 chrX 103141740 103142752 -73831388 + L1M4 LINE L1 47 1038 -5504 1305 38 0 6 chrX 103142761 103142921 -73831219 - L1PA6 LINE L1 -12 6142 5984 2194 82 0 26 chrX 103142938 103143243 -73830897 + AluY SINE Alu 1 297 -14 6564 183 43 13 chrX 103143261 103143464 -73830676 + L1MA9 LINE L1 3770 3966 -2346 1607 193 0 44 chrX 103143464 103143793 -73830347 + AluJb SINE Alu 1 316 0 6564 183 43 13 chrX 103143793 103145786 -73828354 + L1MA9 LINE L1 3966 6036 -276 542 225 22 55 chrX 103145765 103145947 -73828193 + L1ME LINE L1 5546 5721 -445 * 1113 181 22 18 chrX 103145949 103146225 -73827915 + L1MA9 LINE L1 6030 6306 -6 669 278 0 0 chrX 103146225 103146401 -73827739 + L1ME1 LINE L1 4007 4182 -1964 2941 224 38 23 chrX 103146407 103147801 -73826339 + L1ME1 LINE L1 4745 6161 -5 1591 190 41 0 chrX 103147801 103148169 -73825971 - MER63C DNA MER1_type -485 445 63 281 26 26 0 chrX 103148211 103148249 -73825891 + (TA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chrX 103148248 103148269 -73825871 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 232 266 0 0 chrX 103148292 103148356 -73825784 + (TA)n Simple_repeat Simple_repeat 2 65 0 1867 209 10 67 chrX 103148359 103148865 -73825275 - MLT2B1 LTR ERVL -43 477 1 8301 148 31 6 chrX 103148866 103149175 -73824965 - ERVL-B1 LTR ERVL -8 5756 5456 2074 148 127 21 chrX 103149175 103149561 -73824579 + MSTA LTR MaLR 2 428 0 8301 148 31 6 chrX 103149561 103150537 -73823603 - ERVL-B1 LTR ERVL -308 5456 4439 * 23167 176 51 5 chrX 103150531 103154528 -73819612 - ERVL-B1 LTR ERVL -1480 4284 103 2248 153 75 61 chrX 103154546 103155056 -73819084 - L1MA9 LINE L1 -38 6274 5758 1086 196 16 18 chrX 103155062 103155354 -73818786 - MLT2B1 LTR ERVL -126 288 2 291 179 54 0 chrX 103155380 103155436 -73818704 - MER63C DNA MER1_type -871 59 1 250 302 12 47 chrX 103155933 103156019 -73818121 + L2 LINE L2 3229 3311 -2 211 342 35 44 chrX 103156109 103156223 -73817917 + L2 LINE L2 3160 3272 0 411 269 199 0 chrX 103156233 103156374 -73817766 + MIR SINE MIR 88 256 -6 296 222 135 17 chrX 103156987 103157203 -73816937 + L1ME2 LINE L1 5703 5952 -212 243 323 0 15 chrX 103157392 103157457 -73816683 + L3 LINE CR1 1511 1574 -3 2094 129 0 0 chrX 103157459 103157746 -73816394 + AluSx SINE Alu 1 287 -25 836 130 52 19 chrX 103159545 103159699 -73814441 + L1MA10 LINE L1 6171 6329 -5 314 254 153 8 chrX 103159781 103159899 -73814241 + MIR SINE MIR 13 147 -115 1825 135 19 0 chrX 103159912 103160208 -73813932 - AluSx SINE Alu 0 314 14 32555 69 4 17 chrX 103160226 103164133 -73810007 - L1PA6 LINE L1 -1 6153 2327 252 0 0 0 chrX 103164133 103164161 -73809979 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 32555 69 4 17 chrX 103164161 103165484 -73808656 - L1PA6 LINE L1 -3827 2327 989 603 141 0 0 chrX 103165484 103165569 -73808571 - L1PA6 LINE L1 -6048 98 14 977 119 10 90 chrX 103165576 103165777 -73808363 - L1MA4 LINE L1 0 6300 6116 744 217 61 39 chrX 103165777 103165920 -73808220 + MER8 DNA MER2_type 3 152 -87 1137 225 72 9 chrX 103165920 103166142 -73807998 - MER8 DNA MER2_type 0 239 4 744 217 61 39 chrX 103166142 103166178 -73807962 + MER8 DNA MER2_type 152 186 -53 251 203 0 16 chrX 103166185 103166249 -73807891 - L1MA5 LINE L1 -177 6123 6061 195 42 0 0 chrX 103166249 103166273 -73807867 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1912 78 0 0 chrX 103166273 103166516 -73807624 - L1PA8 LINE L1 -24 6148 5906 2936 134 2 11 chrX 103166516 103166978 -73807162 - L1MA4 LINE L1 -225 6075 5618 2243 94 0 0 chrX 103167007 103167293 -73806847 + AluSx SINE Alu 1 286 -26 23 0 0 0 chrX 103167299 103167322 -73806818 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 52 52 chrX 103167324 103167439 -73806701 + MIR SINE MIR 148 262 0 506 316 59 5 chrX 103167812 103167999 -73806141 + MIR SINE MIR 23 219 -43 255 192 0 0 chrX 103168407 103168459 -73805681 + L2 LINE L2 2409 2460 -854 331 167 33 0 chrX 103168459 103168519 -73805621 + tRNA-Glu-GAA tRNA tRNA 11 72 -3 857 241 78 12 chrX 103168538 103168783 -73805357 + MIR SINE MIR 2 262 0 1954 148 0 3 chrX 103168806 103169104 -73805036 + AluSx SINE Alu 6 302 -10 569 146 0 31 chrX 103169128 103169224 -73804916 + L2 LINE L2 3221 3313 0 * 965 240 132 83 chrX 103169222 103169630 -73804510 + L2 LINE L2 2460 2887 -427 727 157 0 26 chrX 103169664 103169779 -73804361 - FLAM_A SINE Alu -30 112 1 615 325 79 76 chrX 103170409 103170828 -73803312 - L2 LINE L2 -25 3247 2828 412 234 165 36 chrX 103170840 103171039 -73803101 - MER20B DNA MER1_type -4 215 1 367 326 21 21 chrX 103171040 103171184 -73802956 - L2 LINE L2 -504 2810 2667 589 314 64 21 chrX 103171286 103171522 -73802618 - MIR SINE MIR -2 260 15 764 241 53 0 chrX 103171850 103172020 -73802120 + MER5A DNA MER1_type 11 189 0 223 238 0 0 chrX 103172293 103172335 -73801805 + MER5B DNA MER1_type 6 47 -131 624 144 0 0 chrX 103172350 103172447 -73801693 - L1P4 LINE L1 -429 5734 5638 2652 82 20 6 chrX 103172447 103172799 -73801341 + L1PA13 LINE L1 5806 6163 0 482 274 8 8 chrX 103172811 103172935 -73801205 - MER5B DNA MER1_type -54 124 1 924 246 15 57 chrX 103173668 103173932 -73800208 - MIR SINE MIR -2 260 8 197 313 25 25 chrX 103174006 103174086 -73800054 - L2 LINE L2 -492 2822 2743 826 182 103 24 chrX 103174165 103174330 -73799810 - MER45A DNA AcHobo 0 178 1 2435 72 0 29 chrX 103175633 103175939 -73798201 + AluY SINE Alu 1 297 -14 608 243 116 0 chrX 103175978 103176151 -73797989 + MIR SINE MIR 58 250 -12 2245 32 0 0 chrX 103177079 103177327 -73796813 + L1PA5 LINE L1 5902 6149 -5 183 250 0 0 chrX 103177343 103177383 -73796757 + MIR SINE MIR 3 42 -220 361 260 87 6 chrX 103177430 103177564 -73796576 + MIR SINE MIR 14 155 -58 622 167 18 0 chrX 103177591 103177705 -73796435 + MIR SINE MIR 46 161 -101 1746 151 0 52 chrX 103177705 103178030 -73796110 - Tigger3(Golem) DNA MER2_type 0 3029 2722 486 207 0 0 chrX 103178028 103178110 -73796030 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 382 240 0 20 chrX 103178110 103178210 -73795930 + MIR SINE MIR 160 257 -5 1647 155 68 16 chrX 103179130 103179439 -73794701 - MER44D DNA MER2_type -14 595 1 294 237 40 0 chrX 103179552 103179628 -73794512 - MER116 DNA Mariner 0 80 2 255 125 0 0 chrX 103179692 103179732 -73794408 + (T)n Simple_repeat Simple_repeat 1 40 0 530 231 89 30 chrX 103179886 103180055 -73794085 - MIR SINE MIR -73 189 11 186 43 0 0 chrX 103180450 103180473 -73793667 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2203 110 0 3 chrX 103180475 103180775 -73793365 - AluSx SINE Alu -13 299 1 479 270 13 57 chrX 103180794 103180953 -73793187 - MIR3 SINE MIR -21 187 36 203 262 0 0 chrX 103181003 103181045 -73793095 - L2 LINE L2 -4 3268 3227 1035 182 5 31 chrX 103181311 103181503 -73792637 - MER5A DNA MER1_type -2 187 1 293 231 0 0 chrX 103181936 103181988 -73792152 + L2 LINE L2 3210 3261 -11 1056 198 6 6 chrX 103182138 103182315 -73791825 + MER5B DNA MER1_type 2 178 0 1249 131 0 35 chrX 103182358 103182557 -73791583 - AluSg/x SINE Alu -13 299 108 706 209 82 44 chrX 103182598 103182707 -73791433 - MER5A DNA MER1_type 0 189 69 766 207 0 15 chrX 103182707 103182842 -73791298 - FLAM_C SINE Alu 0 133 1 706 209 82 44 chrX 103182842 103182914 -73791226 - MER5A DNA MER1_type -120 69 1 252 0 0 0 chrX 103183684 103183712 -73790428 + (TG)n Simple_repeat Simple_repeat 2 29 0 716 291 47 5 chrX 103184097 103184310 -73789830 + MIR SINE MIR 41 262 0 2416 77 0 3 chrX 103184336 103184636 -73789504 - AluSc SINE Alu -10 299 1 1325 167 24 84 chrX 103185174 103185509 -73788631 + MER33 DNA MER1_type 10 324 0 369 298 97 0 chrX 103185509 103185623 -73788517 + L2 LINE L2 3189 3313 0 2325 190 99 49 chrX 103185957 103186551 -73787589 - MLT1E3 LTR MaLR 0 624 1 2445 70 0 0 chrX 103186758 103187058 -73787082 - AluY SINE Alu -11 300 1 226 229 0 0 chrX 103187061 103187109 -73787031 - MIR SINE MIR -57 151 104 956 134 0 0 chrX 103187388 103187515 -73786625 - FLAM_C SINE Alu -5 128 2 22 0 0 0 chrX 103189164 103189186 -73784954 + AT_rich Low_complexity Low_complexity 1 22 0 2144 85 51 7 chrX 103189186 103189480 -73784660 - AluY SINE Alu -2 309 3 897 132 31 0 chrX 103189485 103189614 -73784526 - FLAM_C SINE Alu 0 133 1 1017 167 52 6 chrX 103190278 103190452 -73783688 - MER5A DNA MER1_type -6 183 2 278 262 65 37 chrX 103190457 103190564 -73783576 - MLT1I LTR MaLR -20 389 280 237 274 162 26 chrX 103190646 103190763 -73783377 - MLT1I LTR MaLR -276 133 1 824 185 185 48 chrX 103191213 103191402 -73782738 - MER20 DNA MER1_type -1 218 4 1982 146 61 19 chrX 103191433 103191795 -73782345 + L1MA4 LINE L1 5918 6294 -6 2131 68 0 8 chrX 103191987 103192272 -73781868 - AluY SINE Alu 0 300 18 2281 105 13 0 chrX 103192272 103192576 -73781564 - AluSx SINE Alu -4 308 1 395 289 108 0 chrX 103194799 103194965 -73779175 - MIR SINE MIR -14 248 65 1386 165 30 15 chrX 103194971 103195237 -73778903 - L1MB8 LINE L1 -1 6177 5908 819 222 130 14 chrX 103195940 103196156 -73777984 - MIR SINE MIR -17 245 5 427 207 143 7 chrX 103196635 103196775 -73777365 - MIR SINE MIR 0 262 104 548 279 178 14 chrX 103196875 103197094 -73777046 - MLT1I LTR MaLR -51 358 104 769 226 215 52 chrX 103198362 103198711 -73775429 - MLT1I LTR MaLR 0 409 4 297 120 20 0 chrX 103199111 103199161 -73774979 + LOR1-int LTR ERV1 1036 1086 -7034 6298 96 16 29 chrX 103199184 103200240 -73773900 - L1PB1 LINE L1 -1 6150 5119 340 155 52 0 chrX 103201320 103201378 -73772762 - L2 LINE L2 -4 3309 3249 549 308 148 14 chrX 103201497 103201861 -73772279 - L2 LINE L2 -1079 2235 1823 188 286 20 0 chrX 103201903 103201952 -73772188 - L2 LINE L2 -18 3254 3205 1683 173 10 10 chrX 103202066 103202355 -73771785 + AluJb SINE Alu 1 289 -23 244 280 75 0 chrX 103202471 103202564 -73771576 + L1MC4a LINE L1 6074 6173 -1635 383 292 152 23 chrX 103203309 103203480 -73770660 + MIR SINE MIR 6 198 -64 1387 147 49 0 chrX 103204312 103204537 -73769603 - MER46A DNA MER2_type 0 236 1 1939 144 7 0 chrX 103204589 103204881 -73769259 - AluJb SINE Alu -18 294 1 2022 137 35 38 chrX 103205075 103205448 -73768692 - THE1C LTR MaLR 0 375 4 300 292 27 2 chrX 103205610 103205733 -73768407 + L1MEc LINE L1 1540 1674 -902 821 154 183 11 chrX 103205794 103205969 -73768171 - MER3 DNA MER1_type 0 209 5 2231 210 97 45 chrX 103206358 103207348 -73766792 + L1MC5 LINE L1 6476 7537 -424 2264 105 7 0 chrX 103207575 103207871 -73766269 + AluSx SINE Alu 1 298 -14 212 211 58 0 chrX 103207871 103207923 -73766217 + MIR SINE MIR 207 261 -1 663 202 81 88 chrX 103208433 103208730 -73765410 + MER96B DNA MER1_type? 5 299 -118 568 185 57 10 chrX 103209453 103209589 -73764551 - L1ME1 LINE L1 -3 6161 6022 21 0 0 0 chrX 103210053 103210074 -73764066 + AT_rich Low_complexity Low_complexity 1 21 0 405 0 0 0 chrX 103210770 103210815 -73763325 + (CCA)n Simple_repeat Simple_repeat 2 46 0 336 24 0 0 chrX 103210815 103210856 -73763284 + (TCC)n Simple_repeat Simple_repeat 2 42 0 189 74 0 0 chrX 103210884 103210911 -73763229 + (CCA)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chrX 103211169 103211196 -73762944 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 3059 198 24 39 chrX 103212215 103212928 -73761212 - L1ME2 LINE L1 -10 6154 5453 4850 171 76 27 chrX 103212934 103213549 -73760591 - L1MC1 LINE L1 -1 6332 5749 2126 109 0 0 chrX 103213549 103213825 -73760315 - AluSg SINE Alu -30 280 5 4850 171 76 27 chrX 103213825 103214571 -73759569 - L1MC1 LINE L1 -584 5749 4909 1657 248 117 39 chrX 103214558 103214845 -73759295 - L1ME2 LINE L1 -748 5398 5135 * 2062 130 0 16 chrX 103214845 103215160 -73758980 + AluSx SINE Alu 1 310 -2 1657 248 117 39 chrX 103215160 103215854 -73758286 - L1ME2 LINE L1 -1011 5135 4309 208 401 0 7 chrX 103215908 103216045 -73758095 + L2 LINE L2 2565 2700 -614 1132 190 69 4 chrX 103216238 103216485 -73757655 - L1MB7 LINE L1 -140 6044 5782 738 182 0 63 chrX 103216487 103216630 -73757510 + Tigger1 DNA MER2_type 3 136 -2282 2091 103 7 3 chrX 103216677 103217013 -73757127 - AluSx SINE Alu 0 337 1 883 154 13 114 chrX 103217013 103217111 -73757029 + Tigger1 DNA MER2_type 2215 2279 -139 2329 97 0 0 chrX 103217111 103217411 -73756729 - AluSc SINE Alu -9 300 1 883 154 13 114 chrX 103217411 103217539 -73756601 + Tigger1 DNA MER2_type 2279 2418 0 342 149 113 33 chrX 103217547 103217646 -73756494 - L1MB7 LINE L1 -393 5771 5665 2371 94 0 0 chrX 103218461 103218760 -73755380 - AluSx SINE Alu -13 299 1 16560 88 28 3 chrX 103219280 103222468 -73751672 + L1PA7 LINE L1 2924 6154 0 321 194 206 62 chrX 103223147 103223307 -73750833 - L1ME4a LINE L1 -168 5953 5771 3653 215 104 11 chrX 103223908 103224858 -73749282 + Charlie1a DNA MER1_type 1 1039 -416 605 126 11 0 chrX 103224862 103224957 -73749183 + AluS SINE Alu 1 96 -217 3897 91 63 36 chrX 103227006 103227642 -73746498 - MER39B LTR ERV1 0 653 1 25 31 0 0 chrX 103229556 103229588 -73744552 + AT_rich Low_complexity Low_complexity 1 32 0 1191 148 83 0 chrX 103229607 103229824 -73744316 + MER46A DNA MER2_type 1 235 -1 2308 88 3 0 chrX 103230536 103230833 -73743307 - AluSp SINE Alu -15 298 1 367 343 70 5 chrX 103231507 103231708 -73742432 - L1MC4 LINE L1 -1 8041 7828 2815 185 134 36 chrX 103231748 103232590 -73741550 - L1ME2 LINE L1 -10 6154 5238 5928 35 17 1 chrX 103232597 103233312 -73740828 - L1PA5 LINE L1 0 6154 5429 21 36 0 0 chrX 103233810 103233838 -73740302 + AT_rich Low_complexity Low_complexity 1 28 0 244 340 40 0 chrX 103235411 103235511 -73738629 - MARNA DNA Mariner -62 524 421 536 269 0 6 chrX 103235522 103235678 -73738462 + L1ME1 LINE L1 6007 6161 -5 191 36 36 0 chrX 103235806 103235834 -73738306 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1079 252 25 19 chrX 103235834 103236148 -73737992 + MARNA DNA Mariner 247 562 -24 22 0 0 0 chrX 103236544 103236566 -73737574 + AT_rich Low_complexity Low_complexity 1 22 0 1992 136 14 0 chrX 103238481 103238776 -73735364 - AluSx SINE Alu -13 299 1 409 212 45 61 chrX 103239691 103239823 -73734317 + MIR3 SINE MIR 73 202 -6 201 208 21 0 chrX 103242156 103242204 -73731936 + A-rich Low_complexity Low_complexity 1 49 0 816 290 90 45 chrX 103243542 103244088 -73730052 + L2 LINE L2 2686 3254 -18 1577 53 5 10 chrX 103244149 103244355 -73729785 + L1PA7 LINE L1 5950 6154 0 1092 157 115 0 chrX 103244380 103244571 -73729569 - MER20 DNA MER1_type -1 218 6 568 288 45 70 chrX 103245670 103245913 -73728227 - MIR SINE MIR -23 239 3 1333 170 12 21 chrX 103246539 103246780 -73727360 + MER8 DNA MER2_type 1 239 0 227 461 0 19 chrX 103246805 103246909 -73727231 + L2 LINE L2 3145 3246 -26 2158 119 0 0 chrX 103247488 103247790 -73726350 + AluSg SINE Alu 1 302 -8 1069 118 0 7 chrX 103247790 103247942 -73726198 + AluSg/x SINE Alu 134 284 -28 729 248 58 13 chrX 103248268 103248494 -73725646 + L1MC/D LINE L1 5564 5799 -2009 468 215 50 6 chrX 103248736 103248851 -73725289 - L1ME1 LINE L1 -3 6331 6058 315 0 0 0 chrX 103248851 103248886 -73725254 + (CA)n Simple_repeat Simple_repeat 2 36 0 3347 215 50 18 chrX 103248888 103250122 -73724018 - L1ME1 LINE L1 -49 6615 5342 1571 192 28 3 chrX 103250121 103250475 -73723665 + L1MB7 LINE L1 4915 5277 -869 * 38348 88 12 8 chrX 103250482 103256614 -73717526 + L1PA6 LINE L1 1 6152 -2 1035 221 84 65 chrX 103256638 103256793 -73717347 + LTR16A LTR ERVL 52 203 -247 2144 113 7 3 chrX 103256793 103257094 -73717046 + AluSx SINE Alu 11 312 0 1035 221 84 65 chrX 103257094 103257259 -73716881 + LTR16A LTR ERVL 203 378 -72 2163 314 53 58 chrX 103257270 103257881 -73716259 + ERVL LTR ERVL 3732 4344 -1420 5470 54 5 8 chrX 103257881 103258531 -73715609 + L1PA8 LINE L1 5521 6168 -4 2163 314 53 58 chrX 103258531 103259206 -73714934 + ERVL LTR ERVL 4344 5383 -381 469 108 30 0 chrX 103259319 103259399 -73714741 - MSTA LTR MaLR 0 428 284 4829 167 26 7 chrX 103259399 103260271 -73713869 + L1MB7 LINE L1 5294 6182 -2 840 203 6 28 chrX 103260280 103260462 -73713678 - L1ME1 LINE L1 -1286 5358 5181 2179 228 116 29 chrX 103260475 103260614 -73713526 - L1ME1 LINE L1 -1603 5041 4915 1929 138 83 49 chrX 103260614 103260963 -73713177 - MLT1A1 LTR MaLR -3 362 2 2179 228 116 29 chrX 103260963 103261572 -73712568 - L1ME1 LINE L1 -1729 4915 4228 * 4414 190 55 63 chrX 103261542 103263011 -73711129 - L1ME1 LINE L1 -4771 1875 471 853 102 25 19 chrX 103263578 103263735 -73710405 + Charlie4a DNA MER1_type 259 416 -92 481 215 8 16 chrX 103263735 103263856 -73710284 - L1M4 LINE L1 -995 5151 5032 280 217 36 0 chrX 103263858 103263941 -73710199 - L1MB7 LINE L1 0 6184 6099 16307 123 37 7 chrX 103263941 103266409 -73707731 + Tigger2 DNA MER2_type 1 2543 -175 807 145 0 0 chrX 103266410 103266527 -73707613 + AluSg SINE Alu 17 133 -177 2102 95 39 0 chrX 103266527 103266810 -73707330 + AluSx SINE Alu 1 294 -18 1039 148 55 44 chrX 103266810 103266992 -73707148 + Tigger2 DNA MER2_type 2534 2717 -1 3914 195 46 22 chrX 103266993 103268463 -73705677 - L1MB7 LINE L1 -84 6100 4597 821 237 97 19 chrX 103268607 103268864 -73705276 + Charlie2b DNA MER1_type 393 669 -2113 207 114 0 0 chrX 103268875 103268910 -73705230 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 15414 61 2 1 chrX 103268913 103271541 -73702599 - L1PA6 LINE L1 -3 6151 3507 1284 190 30 91 chrX 103271568 103271691 -73702449 + Charlie2a DNA MER1_type 1472 1601 -1261 243 0 0 0 chrX 103271691 103271718 -73702422 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 1284 190 30 91 chrX 103271718 103271731 -73702409 + Charlie2a DNA MER1_type 1601 1613 -1249 1832 144 4 0 chrX 103271731 103271995 -73702145 - AluJb SINE Alu -25 287 23 1284 190 30 91 chrX 103271995 103272251 -73701889 + Charlie2a DNA MER1_type 1613 1841 -1021 1420 247 108 22 chrX 103272260 103272669 -73701471 - MLT1E LTR MaLR -37 556 113 738 87 71 8 chrX 103272690 103272817 -73701323 - L1MA9 LINE L1 -19 6293 6159 19819 123 11 18 chrX 103272821 103274001 -73700139 - L1M1 LINE L1 -4625 2940 1753 324 0 0 0 chrX 103274001 103274037 -73700103 + (TG)n Simple_repeat Simple_repeat 1 36 0 19819 123 11 18 chrX 103274037 103275817 -73698323 - L1M1 LINE L1 -5812 1753 1 674 64 9 73 chrX 103275806 103275915 -73698225 - L1MA9 LINE L1 -139 6173 6072 * 2260 106 0 0 chrX 103275951 103276254 -73697886 - AluSg SINE Alu -4 306 4 554 277 0 15 chrX 103276257 103276387 -73697753 - MLT1E LTR MaLR -463 130 3 3390 215 39 25 chrX 103276393 103277391 -73696749 + Charlie2a DNA MER1_type 1843 2854 -8 183 42 0 0 chrX 103277464 103277488 -73696652 + (CA)n Simple_repeat Simple_repeat 1 24 0 466 275 111 16 chrX 103277665 103277854 -73696286 + MIR SINE MIR 50 256 -6 269 214 146 34 chrX 103278808 103278897 -73695243 - L2 LINE L2 0 3313 3215 310 278 0 14 chrX 103280009 103280081 -73694059 - MER5A DNA MER1_type -3 186 116 199 391 26 19 chrX 103281075 103281231 -73692909 - L2 LINE L2 -215 3057 2901 581 243 21 37 chrX 103281263 103281452 -73692688 - MER5A DNA MER1_type 0 189 4 1851 117 30 0 chrX 103281491 103281757 -73692383 + AluSx SINE Alu 1 274 -38 2332 90 3 0 chrX 103283368 103283668 -73690472 - AluSg SINE Alu -9 301 1 396 250 135 47 chrX 103283716 103283864 -73690276 - MIR SINE MIR -71 137 13 735 290 106 28 chrX 103284253 103284574 -73689566 + L2 LINE L2 2968 3313 0 2423 90 3 0 chrX 103284637 103284948 -73689192 - AluSx SINE Alu 0 312 1 519 355 16 5 chrX 103284962 103285151 -73688989 - MIR SINE MIR -71 191 1 272 182 23 0 chrX 103285362 103285406 -73688734 + MER91B DNA MER1_type 16 60 -130 385 267 53 33 chrX 103285932 103286082 -73688058 + MIR SINE MIR 77 229 -33 291 261 63 54 chrX 103286267 103286378 -73687762 - L2 LINE L2 -2 3311 3200 1571 202 93 3 chrX 103286424 103286736 -73687404 + MER58B DNA MER1_type 2 341 0 240 211 0 0 chrX 103286839 103286891 -73687249 - L2 LINE L2 -1 3312 3261 225 103 0 0 chrX 103287928 103287967 -73686173 - L1PA15 LINE L1 0 6165 6127 315 192 0 0 chrX 103287968 103288020 -73686120 + L1PA13 LINE L1 1348 1399 -5388 234 250 0 0 chrX 103288508 103288552 -73685588 + Charlie4 DNA MER1_type 1910 1953 -8 453 176 25 101 chrX 103288624 103288743 -73685397 + L2 LINE L2 3196 3305 -8 1920 156 3 0 chrX 103289993 103290295 -73683845 + AluJb SINE Alu 1 303 -9 774 246 23 0 chrX 103290295 103290470 -73683670 + MIR SINE MIR 82 260 -2 1134 219 106 109 chrX 103291092 103291137 -73683003 - LTR33A LTR ERVL -1 522 478 1173 72 6 17 chrX 103291137 103291317 -73682823 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1934 132 0 21 chrX 103291321 103291602 -73682538 - AluSx SINE Alu -37 275 1 1134 219 106 109 chrX 103291602 103292072 -73682068 - LTR33A LTR ERVL -48 475 4 457 226 75 48 chrX 103292088 103292234 -73681906 - MIR SINE MIR -110 152 3 286 353 12 0 chrX 103293061 103293146 -73680994 + MIR SINE MIR 6 91 -171 3377 230 55 30 chrX 103293179 103294023 -73680117 + L2 LINE L2 2026 2890 -424 900 200 100 0 chrX 103294023 103294251 -73679889 - MLT1E2 LTR MaLR -133 521 338 2434 99 55 19 chrX 103294251 103294613 -73679527 + THE1C LTR MaLR 1 375 0 10923 97 39 43 chrX 103294613 103295066 -73679074 + THE1C-int LTR MaLR 1 454 -1126 2363 105 0 0 chrX 103295066 103295371 -73678769 + AluSg SINE Alu 1 305 -5 10923 97 39 43 chrX 103295371 103296503 -73677637 + THE1C-int LTR MaLR 454 1580 0 2047 177 33 14 chrX 103296503 103296871 -73677269 + THE1C LTR MaLR 1 375 0 900 200 100 0 chrX 103296871 103297044 -73677096 - MLT1E2 LTR MaLR -315 339 51 216 246 18 18 chrX 103299240 103299297 -73674843 - L3 LINE CR1 -1 1576 1520 493 365 32 5 chrX 103299312 103299501 -73674639 - MIR3 SINE MIR -12 196 3 412 293 88 29 chrX 103299526 103299731 -73674409 - L3b LINE CR1 -85 1498 1282 271 238 0 0 chrX 103299782 103299845 -73674295 - L1MC4 LINE L1 -1340 6702 6640 832 145 0 43 chrX 103300353 103300491 -73673649 + FLAM_C SINE Alu 1 132 -1 350 263 0 0 chrX 103300597 103300673 -73673467 - 7SK RNA RNA -113 80 5 191 371 66 26 chrX 103301338 103301489 -73672651 + L2 LINE L2 2914 3070 -202 320 237 35 79 chrX 103301527 103301551 -73672589 + MIR SINE MIR 13 37 -225 1742 45 0 0 chrX 103301551 103301750 -73672390 + AluY SINE Alu 1 199 -112 320 237 35 79 chrX 103301750 103301839 -73672301 + MIR SINE MIR 37 121 -141 1426 141 18 14 chrX 103302083 103302359 -73671781 - L1M2 LINE L1 -716 5575 5299 2252 155 33 35 chrX 103302979 103303462 -73670678 - L1M2 LINE L1 -815 5331 4850 448 149 47 0 chrX 103303443 103303549 -73670591 - L1M LINE L1 -808 5338 5246 * 343 203 189 20 chrX 103303557 103303705 -73670435 + Charlie7 DNA MER1_type 2440 2612 0 189 233 0 23 chrX 103303961 103304004 -73670136 + MIR SINE MIR 213 254 -8 398 250 149 40 chrX 103304007 103304155 -73669985 - MIR SINE MIR -98 164 1 286 238 111 0 chrX 103304177 103304240 -73669900 + L3 LINE CR1 1501 1570 -7 6262 62 21 47 chrX 103304567 103304870 -73669270 + L1PA14 LINE L1 5030 5339 -822 2125 112 0 0 chrX 103304870 103305156 -73668984 + AluSx SINE Alu 4 289 -23 6262 62 21 47 chrX 103305156 103305997 -73668143 + L1PA14 LINE L1 5339 6152 -9 1529 152 97 10 chrX 103306412 103306702 -73667438 + MLT1A1 LTR MaLR 1 315 -50 22 0 0 0 chrX 103306911 103306933 -73667207 + AT_rich Low_complexity Low_complexity 1 22 0 387 203 0 0 chrX 103308097 103308166 -73665974 + Tigger2 DNA MER2_type 1 69 -2649 * 2703 137 27 16 chrX 103308150 103308597 -73665543 + Tigger2 DNA MER2_type 2267 2718 0 2333 149 37 28 chrX 103308811 103309239 -73664901 + MSTB1 LTR MaLR 1 432 0 287 302 95 16 chrX 103309488 103309614 -73664526 - L2 LINE L2 -1 3312 3177 696 219 35 32 chrX 103309799 103309985 -73664155 - MER58B DNA MER1_type 0 341 1 720 185 99 105 chrX 103310024 103310348 -73663792 + LTR37B LTR ERV1 147 468 0 277 324 8 60 chrX 103310794 103311044 -73663096 + MER31-int LTR ERV1 1050 1286 -3650 2271 113 0 0 chrX 103311192 103311493 -73662647 + AluSx SINE Alu 1 301 -11 21 36 0 0 chrX 103311549 103311577 -73662563 + AT_rich Low_complexity Low_complexity 1 28 0 322 280 68 71 chrX 103311721 103312146 -73661994 + MER31-int LTR ERV1 1665 2088 -2848 4469 194 91 32 chrX 103312530 103312576 -73661564 + L1MD2 LINE L1 4785 4827 -1532 474 139 13 0 chrX 103312576 103312655 -73661485 - MADE1 DNA Mariner 0 80 1 4469 194 91 32 chrX 103312655 103313855 -73660285 + L1MD2 LINE L1 4827 6142 -217 186 43 0 0 chrX 103313855 103313878 -73660262 + (CA)n Simple_repeat Simple_repeat 2 24 0 4469 194 91 32 chrX 103313878 103314097 -73660043 + L1MD2 LINE L1 6142 6347 -12 235 49 49 0 chrX 103314247 103314288 -73659852 + (TA)n Simple_repeat Simple_repeat 1 43 0 28 48 0 0 chrX 103314357 103314399 -73659741 + AT_rich Low_complexity Low_complexity 1 42 0 2227 88 0 7 chrX 103314972 103315268 -73658872 - AluY SINE Alu -17 294 1 1680 147 168 6 chrX 103315307 103315634 -73658506 + MSTA LTR MaLR 49 428 0 352 258 23 20 chrX 103315789 103315902 -73658238 + MLT-int LTR MaLR 1023 1187 -548 * 808 219 4 107 chrX 103315901 103316171 -73657969 - MLT-int LTR MaLR -636 1099 858 748 250 29 6 chrX 103316252 103316424 -73657716 - MLT-int LTR MaLR -933 802 627 * 11257 28 0 0 chrX 103316421 103317786 -73656354 - L1P LINE L1 -2225 3921 2557 7930 11 0 0 chrX 103317786 103319299 -73654841 + L1PA2 LINE L1 4643 6155 0 2672 205 2 2 chrX 103319306 103319819 -73654321 - MLT1A1-int LTR MaLR -1103 632 120 1003 162 0 0 chrX 103319821 103319975 -73654165 - FRAM SINE Alu -18 158 5 648 206 0 0 chrX 103319975 103320101 -73654039 - MLT1A1-int LTR MaLR -1609 126 1 1890 194 19 6 chrX 103320101 103320461 -73653679 - MLT1A1 LTR MaLR 0 365 1 5759 174 24 37 chrX 103320462 103321773 -73652367 - L1 LINE L1 -2051 5514 4221 818 235 81 74 chrX 103321774 103322439 -73651701 - PABL_B LTR ERV1 0 667 3 254 220 0 0 chrX 103322459 103322509 -73651631 - PABL_B LTR ERV1 -617 50 1 2796 224 27 75 chrX 103322509 103323306 -73650834 - L1 LINE L1 -3342 4223 3389 5339 73 9 1 chrX 103323306 103323991 -73650149 - LTR8 LTR ERV1 -1 690 1 2796 224 27 75 chrX 103323991 103324214 -73649926 - L1 LINE L1 -4176 3389 3157 1825 148 40 10 chrX 103324214 103324517 -73649623 - AluSx SINE Alu 0 312 1 2796 224 27 75 chrX 103324517 103324875 -73649265 - L1 LINE L1 -4408 3157 2783 6712 151 43 1 chrX 103324875 103325504 -73648636 - Tigger3b DNA MER2_type -1798 1230 629 186 43 0 0 chrX 103325504 103325527 -73648613 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6712 151 43 1 chrX 103325527 103326077 -73648063 - Tigger3b DNA MER2_type -2399 629 1 2796 224 27 75 chrX 103326077 103326260 -73647880 - L1 LINE L1 -4782 2783 2593 1890 146 0 23 chrX 103326260 103326569 -73647571 - AluSx SINE Alu -6 306 5 2796 224 27 75 chrX 103326569 103326629 -73647511 - L1 LINE L1 -4972 2593 2532 968 169 106 5 chrX 103326629 103326818 -73647322 - MER6B DNA MER2_type -2 208 1 2796 224 27 75 chrX 103326818 103327093 -73647047 - L1 LINE L1 -5033 2532 2391 1741 226 32 122 chrX 103327090 103328132 -73646008 - L1 LINE L1 -5789 1700 753 * 322 331 31 8 chrX 103328142 103328272 -73645868 - L1M3e LINE L1 -6486 544 412 1864 117 29 60 chrX 103328272 103328622 -73645518 - Tigger2a DNA MER2_type -95 339 1 306 221 139 76 chrX 103328748 103328920 -73645220 - L1M4 LINE L1 -6311 231 49 2173 97 33 3 chrX 103329509 103329808 -73644332 - AluSg SINE Alu -2 308 1 229 221 13 13 chrX 103330092 103330169 -73643971 + L1MB8 LINE L1 6091 6167 -11 191 255 106 0 chrX 103331873 103331920 -73642220 + MIR SINE MIR 19 70 -192 216 97 0 0 chrX 103332205 103332236 -73641904 + (CATA)n Simple_repeat Simple_repeat 2 32 0 22 56 0 0 chrX 103332537 103332573 -73641567 + AT_rich Low_complexity Low_complexity 1 36 0 318 291 58 0 chrX 103332692 103332795 -73641345 + L2 LINE L2 2219 2327 -987 342 323 0 10 chrX 103332799 103332898 -73641242 + MIR SINE MIR 1 98 -164 277 200 0 0 chrX 103332899 103332954 -73641186 - MLT2A1 LTR ERVL 0 444 390 317 191 21 85 chrX 103332980 103333074 -73641066 + L1MC4 LINE L1 6614 6701 -1341 222 150 0 0 chrX 103333076 103333116 -73641024 + (TA)n Simple_repeat Simple_repeat 2 41 0 249 119 0 0 chrX 103333139 103333181 -73640959 + (TA)n Simple_repeat Simple_repeat 2 43 0 237 132 0 0 chrX 103333363 103333401 -73640739 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 2808 84 25 15 chrX 103333401 103333806 -73640334 - MLT2A1 LTR ERVL -35 409 1 640 204 54 14 chrX 103333806 103333953 -73640187 + MIR SINE MIR 95 247 -15 317 356 13 40 chrX 103334697 103334846 -73639294 + L2 LINE L2 3122 3266 -6 1982 99 20 43 chrX 103334860 103335162 -73638978 - AluSx SINE Alu -17 295 1 233 202 60 119 chrX 103335886 103335970 -73638170 + MIR SINE MIR 183 261 -1 4095 235 121 86 chrX 103336580 103336708 -73637432 + HAL1 LINE L1 2 124 -2383 797 201 78 7 chrX 103336708 103336862 -73637278 + FAM SINE Alu 1 165 -10 2068 107 0 14 chrX 103336871 103337151 -73636989 + AluSx SINE Alu 1 276 -36 4095 235 121 86 chrX 103337151 103337425 -73636715 + HAL1 LINE L1 131 394 -2113 2168 102 6 19 chrX 103337425 103337710 -73636430 + AluSq SINE Alu 1 283 -30 192 40 0 0 chrX 103337710 103337735 -73636405 + (CATA)n Simple_repeat Simple_repeat 2 26 0 2168 102 6 19 chrX 103337735 103337762 -73636378 + AluSq SINE Alu 283 309 -4 4095 235 121 86 chrX 103337762 103338001 -73636139 + HAL1 LINE L1 394 623 -1884 1060 69 40 6 chrX 103338001 103338175 -73635965 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4095 235 121 86 chrX 103338175 103338190 -73635950 + HAL1 LINE L1 623 636 -1871 1521 172 18 56 chrX 103338190 103338335 -73635805 - AluJo SINE Alu -38 274 144 2060 131 0 3 chrX 103338335 103338626 -73635514 - AluSx SINE Alu -22 290 1 1521 172 18 56 chrX 103338626 103338765 -73635375 - AluJo SINE Alu -168 144 1 4095 235 121 86 chrX 103338765 103339452 -73634688 + HAL1 LINE L1 636 1298 -1209 2035 146 144 5 chrX 103339452 103339828 -73634312 + MSTA LTR MaLR 1 428 0 4095 235 121 86 chrX 103339828 103340029 -73634111 + HAL1 LINE L1 1298 1491 -1016 1938 192 98 19 chrX 103340029 103340497 -73633643 + MLT1D LTR MaLR 1 505 0 4095 235 121 86 chrX 103340497 103341358 -73632782 + HAL1 LINE L1 1491 2505 -2 871 184 0 0 chrX 103341396 103341548 -73632592 + FRAM SINE Alu 2 153 -13 671 296 162 13 chrX 103341768 103342163 -73631977 + L2 LINE L2 2855 3308 -5 487 170 10 0 chrX 103342289 103342389 -73631751 - L1PA16 LINE L1 0 6166 6066 1029 172 64 30 chrX 103342881 103343084 -73631056 + AluJb SINE Alu 82 291 -21 265 303 0 0 chrX 103343213 103343289 -73630851 + MIR SINE MIR 181 256 -6 3025 62 20 15 chrX 103343817 103344219 -73629921 + MLT2A1 LTR ERVL 1 404 -40 215 310 56 14 chrX 103344544 103344615 -73629525 + MIR SINE MIR 21 94 -114 380 378 61 44 chrX 103344846 103345142 -73628998 - L2 LINE L2 -5 3267 2967 21 36 0 0 chrX 103345398 103345426 -73628714 + AT_rich Low_complexity Low_complexity 1 28 0 269 217 6 155 chrX 103345538 103345624 -73628516 - MER89-int LTR ERV1 -1872 3064 3011 2430 68 10 0 chrX 103345624 103345918 -73628222 - AluSp SINE Alu -14 299 3 269 217 6 155 chrX 103345918 103345992 -73628148 - MER89-int LTR ERV1 -1925 3011 2928 2175 93 3 7 chrX 103346110 103346400 -73627740 + AluSg SINE Alu 1 289 -21 840 57 43 0 chrX 103346409 103346549 -73627591 + (TA)n Simple_repeat Simple_repeat 1 146 0 324 271 75 62 chrX 103346589 103346895 -73627245 - MER89-int LTR ERV1 -2156 2780 2471 744 214 21 0 chrX 103347072 103347217 -73626923 + Charlie1b DNA MER1_type 51 198 -325 2355 86 0 0 chrX 103347219 103347511 -73626629 + AluSg SINE Alu 1 292 -18 32 20 0 20 chrX 103347994 103348032 -73626108 + AT_rich Low_complexity Low_complexity 1 39 -10 795 132 0 8 chrX 103348032 103348153 -73625987 - 5S rRNA rRNA -1 120 1 32 20 0 20 chrX 103348153 103348164 -73625976 + AT_rich Low_complexity Low_complexity 39 49 0 189 268 0 0 chrX 103348726 103348767 -73625373 + MIR SINE MIR 73 113 -149 341 270 135 40 chrX 103348981 103349107 -73625033 - MIR3 SINE MIR -3 205 68 2402 88 3 0 chrX 103349577 103349884 -73624256 - AluSp SINE Alu -5 308 1 338 267 0 20 chrX 103349949 103350050 -73624090 - MER101 LTR ERV1 -144 330 232 391 209 0 118 chrX 103350420 103350530 -73623610 - MER89-int LTR ERV1 -4238 3882 3786 585 360 24 18 chrX 103350762 103351142 -73622998 - MER89-int LTR ERV1 -2089 2558 2177 270 274 97 8 chrX 103352133 103352257 -73621883 - MER89-int LTR ERV1 -3293 3508 3374 453 297 79 67 chrX 103352918 103353427 -73620713 - MER89-int LTR ERV1 -3107 3984 2546 1819 160 10 10 chrX 103353582 103353875 -73620265 + AluJo SINE Alu 3 295 -17 2145 125 7 0 chrX 103354700 103355003 -73619137 - AluSx SINE Alu -7 305 1 540 243 271 5 chrX 103356171 103356381 -73617759 - MER101 LTR ERV1 -58 512 233 2288 102 0 0 chrX 103356981 103357275 -73616865 - AluSg SINE Alu -16 294 1 517 123 0 104 chrX 103357308 103357354 -73616786 + FLAM_A SINE Alu 18 48 -263 4981 69 8 22 chrX 103357354 103357667 -73616473 - PABL_A LTR ERV1 0 660 344 2460 74 0 0 chrX 103357667 103357966 -73616174 + AluY SINE Alu 1 299 -12 4981 69 8 22 chrX 103357966 103358322 -73615818 - PABL_A LTR ERV1 -316 344 1 517 123 0 104 chrX 103358322 103358381 -73615759 + FLAM_A SINE Alu 48 112 -199 925 129 231 59 chrX 103358401 103358543 -73615597 - AluJb SINE Alu 0 302 186 1846 150 3 10 chrX 103358543 103358843 -73615297 - AluSx SINE Alu -14 298 1 925 129 231 59 chrX 103358843 103358956 -73615184 - AluJb SINE Alu -116 186 3 217 162 0 0 chrX 103359214 103359251 -73614889 + MIR SINE MIR 197 233 -29 22 35 0 0 chrX 103359290 103359319 -73614821 + GC_rich Low_complexity Low_complexity 1 29 0 771 63 175 77 chrX 103360537 103360680 -73613460 - L1PA11 LINE L1 -9 6165 6009 683 250 139 6 chrX 103361319 103361499 -73612641 - MIR SINE MIR -39 223 20 2155 107 3 31 chrX 103361522 103361839 -73612301 - AluSx SINE Alu 0 312 5 1940 119 18 80 chrX 103362204 103362523 -73611617 + MER47A DNA MER2_type 1 293 -2030 1554 180 26 36 chrX 103362523 103362829 -73611311 - AluJo SINE Alu -9 303 1 1940 119 18 80 chrX 103362829 103362896 -73611244 + MER47A DNA MER2_type 293 363 -3 209 319 11 0 chrX 103363485 103363579 -73610561 + (TG)n Simple_repeat Simple_repeat 2 96 0 1329 247 107 30 chrX 103363722 103364240 -73609900 - L2 LINE L2 -19 3294 2724 34 55 0 0 chrX 103364467 103364522 -73609618 + AT_rich Low_complexity Low_complexity 1 55 0 577 194 29 0 chrX 103364596 103364699 -73609441 - L2 LINE L2 0 3313 3208 25 0 0 0 chrX 103365045 103365070 -73609070 + AT_rich Low_complexity Low_complexity 1 25 0 2181 94 45 0 chrX 103365162 103365449 -73608691 - AluSp SINE Alu -13 300 1 21 0 0 0 chrX 103365947 103365968 -73608172 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chrX 103366261 103366315 -73607825 + AT_rich Low_complexity Low_complexity 1 54 0 273 250 263 7 chrX 103367828 103367980 -73606160 - MIR3 SINE MIR -6 202 12 244 303 53 0 chrX 103368240 103368316 -73605824 - MIR3 SINE MIR -5 203 124 21 0 0 0 chrX 103368805 103368826 -73605314 + AT_rich Low_complexity Low_complexity 1 21 0 946 91 8 0 chrX 103368826 103368958 -73605182 - AluSq/x SINE Alu -180 133 1 2130 109 0 0 chrX 103369294 103369605 -73604535 - AluSx SINE Alu 0 311 1 392 280 56 0 chrX 103369661 103369768 -73604372 - MIR SINE MIR -21 241 129 246 306 138 25 chrX 103370182 103370378 -73603762 + L2 LINE L2 2222 2439 -875 1694 141 65 0 chrX 103371006 103371283 -73602857 - AluJb SINE Alu -15 297 3 204 40 0 0 chrX 103371366 103371391 -73602749 + (T)n Simple_repeat Simple_repeat 1 25 0 2026 121 38 0 chrX 103371461 103371750 -73602390 - AluSx SINE Alu -12 300 1 2463 73 0 6 chrX 103372236 103372549 -73601591 - AluY SINE Alu 0 311 1 2216 110 3 0 chrX 103373447 103373747 -73600393 + AluSp SINE Alu 2 302 -11 382 232 80 45 chrX 103374525 103374637 -73599503 - MIR3 SINE MIR -8 200 85 189 0 0 0 chrX 103375187 103375208 -73598932 + (T)n Simple_repeat Simple_repeat 1 21 0 379 250 71 14 chrX 103375411 103375551 -73598589 + MER103 DNA DNA 19 166 0 754 154 98 0 chrX 103375579 103375722 -73598418 + MER5A DNA MER1_type 1 157 -32 297 317 49 49 chrX 103375999 103376163 -73597977 + MIR3 SINE MIR 40 203 -5 319 267 176 54 chrX 103376209 103376430 -73597710 - HAL1 LINE L1 -10 2497 2250 13388 154 35 26 chrX 103376441 103378770 -73595370 - L1MA7 LINE L1 -3 6288 3913 2305 83 0 49 chrX 103378770 103379095 -73595045 - AluSg SINE Alu -1 309 1 13388 154 35 26 chrX 103379095 103380482 -73593658 - L1MA7 LINE L1 -2378 3913 2540 1843 270 88 31 chrX 103380511 103381390 -73592750 - HAL1 LINE L1 -298 2209 1267 312 27 0 0 chrX 103381390 103381427 -73592713 + (CAT)n Simple_repeat Simple_repeat 3 39 0 1843 270 88 31 chrX 103381427 103381525 -73592615 - HAL1 LINE L1 -1240 1267 1176 2682 216 66 12 chrX 103381597 103382276 -73591864 - L1ME1 LINE L1 -18 6148 5433 4066 166 54 6 chrX 103382277 103383059 -73591081 + L1MB8 LINE L1 5357 6175 -3 875 204 50 18 chrX 103383057 103383278 -73590862 - L1MB8 LINE L1 -41 6137 5910 * 2095 197 61 8 chrX 103383321 103383992 -73590148 - L1MB8 LINE L1 -662 5522 4817 228 312 0 28 chrX 103384006 103384115 -73590025 + T-rich Low_complexity Low_complexity 1 106 0 2069 74 93 0 chrX 103384264 103384533 -73589607 - AluY SINE Alu -17 294 1 1754 155 13 30 chrX 103384679 103384983 -73589157 + AluJo SINE Alu 1 299 -13 522 192 162 78 chrX 103388134 103388228 -73585912 - MER5A DNA MER1_type 0 189 104 1916 139 3 10 chrX 103388228 103388530 -73585610 - AluJb SINE Alu -5 307 8 522 192 162 78 chrX 103388530 103388602 -73585538 - MER5A DNA MER1_type -85 104 9 757 251 113 22 chrX 103388628 103388903 -73585237 + L1ME2 LINE L1 5841 6140 -24 431 179 113 73 chrX 103388788 103388905 -73585235 + L1MA10 LINE L1 6175 6301 -33 * 2343 84 0 3 chrX 103388905 103389201 -73584939 - AluY SINE Alu -16 295 1 431 179 113 73 chrX 103389201 103389234 -73584906 + L1MA10 LINE L1 6301 6331 -3 618 200 38 17 chrX 103389322 103389479 -73584661 - L1ME1 LINE L1 -3 6163 6013 1075 213 91 8 chrX 103390857 103391111 -73583029 + MER58B DNA MER1_type 67 341 0 371 333 108 57 chrX 103392394 103392691 -73581449 - L2 LINE L2 -49 3223 2912 249 199 94 116 chrX 103392831 103393012 -73581128 - L1MC4 LINE L1 -1 8041 7865 192 232 36 18 chrX 103393033 103393089 -73581051 - L2 LINE L2 -563 2751 2695 2270 110 0 0 chrX 103393640 103393941 -73580199 + AluSx SINE Alu 1 301 -11 963 157 60 12 chrX 103395138 103395304 -73578836 - FAM SINE Alu 0 175 2 187 281 146 0 chrX 103396355 103396437 -73577703 - L2 LINE L2 -1489 1825 1732 479 258 96 18 chrX 103396729 103396896 -73577244 - MER5A DNA MER1_type -3 186 7 2370 88 3 0 chrX 103397221 103397528 -73576612 - AluY SINE Alu -2 309 2 1447 254 96 3 chrX 103397666 103398021 -73576119 - MLT1E LTR MaLR 0 593 206 806 176 67 7 chrX 103400249 103400494 -73573646 + MER58 DNA MER1_type 19 2420 0 1107 131 0 23 chrX 103401157 103401332 -73572808 - FRAM SINE Alu -13 163 1 207 0 0 0 chrX 103401338 103401361 -73572779 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 351 0 0 0 chrX 103601693 103601732 -73372408 + (CA)n Simple_repeat Simple_repeat 2 40 0 1133 141 35 0 chrX 103602550 103602749 -73371391 - L1MB3 LINE L1 -1 6182 5977 4108 138 18 6 chrX 103602811 103603519 -73370621 - L1MB7 LINE L1 0 6184 5468 331 314 10 10 chrX 103604299 103604401 -73369739 - MIR SINE MIR -77 131 30 22 0 0 0 chrX 103605833 103605855 -73368285 + AT_rich Low_complexity Low_complexity 1 22 0 7289 20 7 0 chrX 103605939 103606793 -73367347 + L1PA2 LINE L1 5293 6152 -3 335 280 16 44 chrX 103606813 103606995 -73367145 + GA-rich Low_complexity Low_complexity 2 178 0 715 313 9 19 chrX 103608027 103608241 -73365899 + MIR SINE MIR 1 212 -50 22 35 0 0 chrX 103608713 103608742 -73365398 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chrX 103609001 103609025 -73365115 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 68 0 0 chrX 103609125 103609169 -73364971 + AT_rich Low_complexity Low_complexity 1 44 0 368 196 65 11 chrX 103609252 103609344 -73364796 - Charlie7 DNA MER1_type -8 2604 2508 * 1537 240 51 116 chrX 103609342 103609724 -73364416 - Charlie7 DNA MER1_type -1923 689 373 1047 160 113 9 chrX 103609724 103609937 -73364203 - MER46A DNA MER2_type -1 235 1 1537 240 51 116 chrX 103609937 103610263 -73363877 - Charlie7 DNA MER1_type -2239 373 27 400 257 171 104 chrX 103610351 103610514 -73363626 - MIR SINE MIR -6 256 73 2314 105 0 10 chrX 103610514 103610827 -73363313 + AluSg SINE Alu 1 310 0 400 257 171 104 chrX 103610827 103610885 -73363255 - MIR SINE MIR -189 73 20 396 228 162 36 chrX 103612518 103612685 -73361455 - MIR3 SINE MIR -1 207 20 38087 82 12 8 chrX 103613721 103616799 -73357341 + L1PA6 LINE L1 3 3069 -3085 2600 62 0 0 chrX 103616799 103617108 -73357032 + AluY SINE Alu 1 309 -2 38087 82 12 8 chrX 103617108 103620165 -73353975 + L1PA6 LINE L1 3069 6154 0 302 98 0 0 chrX 103620370 103620411 -73353729 - L2 LINE L2 -9 3304 3264 205 205 0 0 chrX 103620561 103620600 -73353540 + A-rich Low_complexity Low_complexity 1 39 0 386 238 119 10 chrX 103620755 103620856 -73353284 + L2 LINE L2 3201 3312 -1 21 0 0 0 chrX 103621265 103621286 -73352854 + AT_rich Low_complexity Low_complexity 1 21 0 17657 112 9 58 chrX 103622605 103625725 -73348415 + L1P LINE L1 471 3437 -2709 1546 47 0 0 chrX 103625712 103625903 -73348237 + L1PA7 LINE L1 5854 6044 -110 * 39 0 0 0 chrX 103627979 103628018 -73346122 + AT_rich Low_complexity Low_complexity 1 39 0 246 329 88 49 chrX 103628198 103628505 -73345635 + L2 LINE L2 2374 2692 -622 302 389 53 42 chrX 103628636 103628919 -73345221 + L2 LINE L2 2970 3255 -17 210 314 110 42 chrX 103630726 103630844 -73343296 - L2 LINE L2 -14 3258 3133 878 150 0 0 chrX 103631466 103631599 -73342541 + AluJb SINE Alu 3 135 -177 2002 144 0 0 chrX 103631599 103631905 -73342235 + AluSq SINE Alu 1 306 -7 1914 170 3 3 chrX 103632294 103632605 -73341535 + AluJb SINE Alu 1 311 -1 291 83 0 0 chrX 103633119 103633155 -73340985 + U2 snRNA snRNA 1 36 -152 529 291 126 5 chrX 103633530 103633736 -73340404 + MIR SINE MIR 2 232 -30 2211 88 0 0 chrX 103633810 103634083 -73340057 + AluSc SINE Alu 1 273 -36 242 66 82 33 chrX 103634085 103634146 -73339994 + GA-rich Low_complexity Low_complexity 4 67 0 181 119 0 143 chrX 103634455 103634497 -73339643 + MIR SINE MIR 39 74 -134 509 309 22 11 chrX 103634872 103635050 -73339090 + L3 LINE CR1 1390 1569 -8 418 355 99 14 chrX 103635382 103635664 -73338476 - L2 LINE L2 -105 3167 2862 224 297 221 14 chrX 103635699 103635921 -73338219 - L2 LINE L2 -536 2778 2511 542 287 113 5 chrX 103636219 103636414 -73337726 - MIR SINE MIR -10 252 37 802 177 0 7 chrX 103636491 103636632 -73337508 + FLAM_C SINE Alu 1 140 -3 1421 231 98 63 chrX 103636894 103637419 -73336721 - L2 LINE L2 -1 3312 2757 249 235 0 0 chrX 103637429 103637480 -73336660 - L2 LINE L2 -527 2787 2737 2126 145 30 3 chrX 103640207 103640545 -73333595 - MER7A DNA MER2_type 0 346 2 2438 50 27 7 chrX 103643772 103644073 -73330067 - AluY SINE Alu -4 307 1 22 56 0 0 chrX 103644591 103644627 -73329513 + AT_rich Low_complexity Low_complexity 1 36 0 46 19 0 0 chrX 103644716 103644769 -73329371 + AT_rich Low_complexity Low_complexity 1 53 0 3197 121 13 11 chrX 103644894 103645416 -73328724 + L1MB3 LINE L1 5661 6183 0 212 56 83 0 chrX 103645542 103645578 -73328562 + T-rich Low_complexity Low_complexity 2 40 0 772 236 118 5 chrX 103646024 103646244 -73327896 + MIR SINE MIR 16 260 -2 183 184 0 0 chrX 103646508 103646546 -73327594 + (CA)n Simple_repeat Simple_repeat 2 39 0 595 226 44 6 chrX 103647063 103647222 -73326918 - MER103 DNA DNA -1 165 1 268 274 186 20 chrX 103648825 103648927 -73325213 - L2 LINE L2 -4 3268 3150 362 260 245 39 chrX 103648971 103649179 -73324961 - MIR SINE MIR -11 251 1 2240 103 7 0 chrX 103650571 103650871 -73323269 - AluSg SINE Alu -8 302 1 5430 56 6 4 chrX 103650877 103651570 -73322570 - L1PA7 LINE L1 0 6154 5461 26 30 0 0 chrX 103651578 103651611 -73322529 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chrX 103653664 103653687 -73320453 + AT_rich Low_complexity Low_complexity 1 23 0 1181 218 35 81 chrX 103654051 103654446 -73319694 - MLT1B LTR MaLR -13 377 1 254 331 92 35 chrX 103654511 103654653 -73319487 - MIR3 SINE MIR -27 181 32 36 19 0 19 chrX 103656109 103656133 -73318007 + AT_rich Low_complexity Low_complexity 1 24 -29 2214 68 32 4 chrX 103656133 103656413 -73317727 + AluY SINE Alu 1 288 -23 36 19 0 19 chrX 103656413 103656442 -73317698 + AT_rich Low_complexity Low_complexity 24 53 0 4981 163 35 13 chrX 103656706 103658385 -73315755 - L1PB4 LINE L1 -4 6152 4441 4460 247 66 20 chrX 103658385 103659739 -73314401 - L1MEc LINE L1 -3444 2771 1345 2213 102 3 0 chrX 103659739 103660050 -73314090 + AluSp SINE Alu 1 312 0 4460 247 66 20 chrX 103660050 103660722 -73313418 - L1MEc LINE L1 -4870 1345 705 1402 286 27 50 chrX 103660763 103661360 -73312780 - L1MEc LINE L1 -5779 617 35 2216 57 10 14 chrX 103661474 103661771 -73312369 + L1PA5 LINE L1 5859 6154 0 25 31 0 0 chrX 103662441 103662473 -73311667 + AT_rich Low_complexity Low_complexity 1 32 0 1180 205 15 27 chrX 103664211 103664470 -73309670 - MIR SINE MIR 0 262 7 413 207 98 12 chrX 103664755 103664919 -73309221 - L1ME4a LINE L1 0 6121 5944 319 349 67 44 chrX 103665754 103666141 -73307999 - L2 LINE L2 -368 2946 2551 2578 7 0 0 chrX 103666393 103666672 -73307468 - AluY SINE Alu -6 305 27 484 270 150 30 chrX 103667559 103667759 -73306381 - MIR SINE MIR -3 259 36 298 200 92 0 chrX 103668099 103668164 -73305976 + MER45 DNA AcHobo 1511 1581 0 342 339 16 8 chrX 103668164 103668288 -73305852 - L3 LINE CR1 -125 1452 1328 337 286 61 54 chrX 103668283 103668430 -73305710 + MIR SINE MIR 25 172 -90 * 25 0 0 0 chrX 103668696 103668721 -73305419 + AT_rich Low_complexity Low_complexity 1 25 0 192 111 0 0 chrX 103668846 103668882 -73305258 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 489 311 8 0 chrX 103668882 103669004 -73305136 - L2 LINE L2 0 3272 3150 365 288 36 9 chrX 103669008 103669119 -73305021 - MIR SINE MIR -68 140 27 658 270 4 84 chrX 103669812 103670038 -73304102 + L3 LINE CR1 824 1031 -546 283 195 22 3 chrX 103670089 103670157 -73303983 + L1MC4a LINE L1 5603 5668 -460 * 357 262 42 131 chrX 103670156 103671153 -73302987 - L1MEd LINE L1 -1045 1445 442 834 240 87 8 chrX 103671194 103671436 -73302704 + MIR SINE MIR 2 262 0 349 289 96 30 chrX 103671608 103671743 -73302397 - L1MEd LINE L1 -5918 201 58 454 220 84 65 chrX 103671751 103671965 -73302175 + L1MC4a LINE L1 5708 5925 -1883 22 0 0 0 chrX 103672088 103672110 -73302030 + AT_rich Low_complexity Low_complexity 1 22 0 1491 227 56 89 chrX 103672445 103672859 -73301281 - LTR33 LTR ERVL -1 520 94 2128 84 45 0 chrX 103672859 103673169 -73300971 + L1MA1 LINE L1 5979 6302 0 1491 227 56 89 chrX 103673169 103673250 -73300890 - LTR33 LTR ERVL -427 94 42 488 90 39 0 chrX 103673250 103673328 -73300812 + L1MC1 LINE L1 6248 6328 -5 1491 227 56 89 chrX 103673328 103673369 -73300771 - LTR33 LTR ERVL -479 42 1 240 235 29 15 chrX 103673685 103673753 -73300387 + MER102a DNA MER1_type 249 317 -13 295 294 63 16 chrX 103673791 103673917 -73300223 + L3 LINE CR1 1158 1289 -288 2133 131 0 0 chrX 103673917 103674223 -73299917 + AluSq SINE Alu 1 306 -7 284 227 15 15 chrX 103674335 103674401 -73299739 + L3 LINE CR1 1305 1370 -207 386 224 13 18 chrX 103674796 103674954 -73299186 - L2 LINE L2 -531 2783 2554 2184 123 0 0 chrX 103675065 103675375 -73298765 - AluY SINE Alu -1 310 1 223 366 78 20 chrX 103675378 103675531 -73298609 + L3 LINE CR1 1374 1535 -42 216 204 0 23 chrX 103675605 103675649 -73298491 - MIR SINE MIR -1 261 219 * 4202 261 222 14 chrX 103675618 103676285 -73297855 - L2 LINE L2 -19 3294 2767 1399 213 46 3 chrX 103676285 103676407 -73297733 + AluJo SINE Alu 1 116 -196 405 0 0 0 chrX 103676407 103676452 -73297688 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1399 213 46 3 chrX 103676452 103676611 -73297529 + AluJo SINE Alu 116 294 -18 4202 261 222 14 chrX 103676611 103677865 -73296275 - L2 LINE L2 -546 2767 974 285 313 54 9 chrX 103678061 103678173 -73295967 - MER103 DNA DNA -49 117 1 344 298 19 10 chrX 103678556 103678660 -73295480 - MIR SINE MIR -11 251 147 244 143 48 0 chrX 103678790 103678832 -73295308 - MIR3 SINE MIR -5 203 160 500 295 7 34 chrX 103679101 103679250 -73294890 - MER5A DNA MER1_type 0 189 45 1540 194 106 39 chrX 103680031 103680464 -73293676 + MLT1C LTR MaLR 6 467 0 546 183 8 48 chrX 103680481 103680607 -73293533 + MIR SINE MIR 92 212 -50 198 304 176 10 chrX 103681258 103681360 -73292780 + L2 LINE L2 3144 3262 -10 754 317 32 9 chrX 103681387 103681608 -73292532 + MIR SINE MIR 29 254 -8 22 0 0 0 chrX 103682269 103682291 -73291849 + AT_rich Low_complexity Low_complexity 1 22 0 921 247 93 43 chrX 103682315 103682429 -73291711 - L2 LINE L2 0 3313 3206 1061 220 72 0 chrX 103682429 103682638 -73291502 + MER58A DNA MER1_type 1 224 0 921 247 93 43 chrX 103682638 103682847 -73291293 - L2 LINE L2 -107 3206 2974 2206 217 81 65 chrX 103682852 103683544 -73290596 - L2 LINE L2 -507 2807 2105 425 314 23 11 chrX 103683518 103683693 -73290447 + L2 LINE L2 2473 2649 -665 * 678 346 48 27 chrX 103683726 103684061 -73290079 + L2 LINE L2 2366 2707 -607 22 56 0 0 chrX 103684763 103684799 -73289341 + AT_rich Low_complexity Low_complexity 1 36 0 358 296 114 26 chrX 103684820 103684958 -73289182 + MIR SINE MIR 2 145 -63 1006 205 13 55 chrX 103685224 103685468 -73288672 + MIR SINE MIR 9 241 -21 634 308 92 4 chrX 103685781 103686021 -73288119 + MIR SINE MIR 1 261 -1 184 175 0 50 chrX 103686299 103686339 -73287801 + MER5B DNA MER1_type 1 38 -140 24 32 0 0 chrX 103686339 103686370 -73287770 + AT_rich Low_complexity Low_complexity 1 31 0 632 308 25 5 chrX 103687497 103687695 -73286445 + MIR SINE MIR 5 206 -56 5074 153 20 38 chrX 103687721 103687977 -73286163 - L1MA7 LINE L1 -3 6288 6029 2164 117 0 7 chrX 103687977 103688275 -73285865 + AluSx SINE Alu 7 302 -10 5074 153 20 38 chrX 103688275 103689010 -73285130 - L1MA7 LINE L1 -262 6029 5315 1120 207 0 9 chrX 103689022 103689239 -73284901 - AluJo SINE Alu -26 286 72 5416 164 37 22 chrX 103689239 103689830 -73284310 - L1MA7 LINE L1 -815 5331 4715 1971 156 36 6 chrX 103689830 103690164 -73283976 + MER2 DNA MER2_type 1 344 0 5416 164 37 22 chrX 103690164 103690657 -73283483 - L1MA7 LINE L1 -1431 4715 4231 3243 181 32 15 chrX 103690669 103691410 -73282730 + L1 LINE L1 2699 3452 -2694 324 263 178 0 chrX 103691463 103691581 -73282559 + L2 LINE L2 3175 3313 0 5672 183 48 20 chrX 103691684 103693425 -73280715 - L1MB8 LINE L1 0 6178 4363 1780 155 0 21 chrX 103693425 103693741 -73280399 - AluJb SINE Alu 0 310 1 5672 183 48 20 chrX 103693741 103694130 -73280010 - L1MB8 LINE L1 -1815 4363 3986 563 163 92 114 chrX 103694556 103694740 -73279400 + MIR SINE MIR 41 220 -42 694 191 30 33 chrX 103694907 103695189 -73278951 + MLT1A1 LTR MaLR 5 363 -2 289 354 140 0 chrX 103695190 103695354 -73278786 + MIR SINE MIR 76 262 0 200 200 18 36 chrX 103695637 103695692 -73278448 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 275 310 45 7 chrX 103695692 103695847 -73278293 - L1MC4a LINE L1 -1878 5930 5770 271 180 0 0 chrX 103697303 103697353 -73276787 - L2 LINE L2 0 3313 3264 378 229 56 55 chrX 103697990 103698156 -73275984 - L1P5 LINE L1 -697 5459 5293 1001 144 83 0 chrX 103698688 103698868 -73275272 - L1PA16 LINE L1 -9 6157 5963 21 36 0 0 chrX 103698895 103698923 -73275217 + AT_rich Low_complexity Low_complexity 1 28 0 15508 38 0 0 chrX 103698923 103701569 -73272571 - L1PA5 LINE L1 -5 6149 3504 2352 92 0 3 chrX 103701756 103702050 -73272090 + AluSg SINE Alu 1 293 -17 917 94 106 6 chrX 103702147 103702307 -73271833 - Tigger7 DNA MER2_type -38 2449 2274 * 2496 163 7 11 chrX 103702305 103702338 -73271802 - Tigger7 DNA MER2_type -2052 435 403 1914 134 20 16 chrX 103702338 103702643 -73271497 - AluJb SINE Alu -6 306 1 2496 163 7 11 chrX 103702643 103703045 -73271095 - Tigger7 DNA MER2_type -2084 403 2 583 296 112 19 chrX 103703702 103703908 -73270232 - MIR SINE MIR -6 256 32 786 243 42 80 chrX 103704141 103704404 -73269736 - MIR SINE MIR 0 262 10 438 20 0 0 chrX 103704405 103704456 -73269684 + (TG)n Simple_repeat Simple_repeat 2 52 0 2379 97 3 0 chrX 103704630 103704941 -73269199 + AluSp SINE Alu 1 312 -1 255 31 0 0 chrX 103704992 103705024 -73269116 + (T)n Simple_repeat Simple_repeat 1 32 0 4142 144 14 4 chrX 103706181 103706890 -73267250 - L1MB3 LINE L1 -8 6175 5460 204 171 0 0 chrX 103707125 103707160 -73266980 - L2 LINE L2 -16 3297 3263 * 952 227 13 34 chrX 103707133 103707371 -73266769 - MIR SINE MIR -18 244 12 1769 134 93 0 chrX 103707715 103707860 -73266280 - AluSx SINE Alu -18 294 164 281 24 49 0 chrX 103707860 103707901 -73266239 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1769 134 93 0 chrX 103707901 103708024 -73266116 - AluSx SINE Alu -148 164 1 233 130 0 65 chrX 103708064 103708110 -73266030 + MER113 DNA MER1_type? 453 495 -26 198 234 0 21 chrX 103708134 103708181 -73265959 + MIR3 SINE MIR 152 197 -11 476 245 210 66 chrX 103708396 103708653 -73265487 + L2 LINE L2 3017 3310 -3 204 220 160 0 chrX 103708811 103708861 -73265279 - L2 LINE L2 -2 3311 3254 373 242 84 0 chrX 103708917 103709012 -73265128 - L2 LINE L2 -1 3312 3210 645 251 112 11 chrX 103709220 103709407 -73264733 - MIR SINE MIR -33 229 24 635 281 14 0 chrX 103710206 103710423 -73263717 + L1M4 LINE L1 5080 5299 -847 234 0 0 0 chrX 103710435 103710461 -73263679 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5147 51 12 9 chrX 103710461 103711144 -73262996 - L1PA7 LINE L1 -24 6130 5446 22 0 0 0 chrX 103711850 103711872 -73262268 + AT_rich Low_complexity Low_complexity 1 22 0 757 354 135 40 chrX 103712353 103713634 -73260506 - L2 LINE L2 -165 3107 1703 1439 196 59 3 chrX 103713721 103714027 -73260113 - MER5C DNA MER1_type 0 324 2 265 328 55 52 chrX 103714156 103714446 -73259694 - L2 LINE L2 -1878 1436 1146 3747 79 37 9 chrX 103714534 103715105 -73259035 - Tigger4(Zombi) DNA MER2_type -122 2609 2023 6783 50 6 1 chrX 103715105 103715957 -73258183 + L1PA7 LINE L1 5299 6154 0 201 147 0 0 chrX 103715973 103716007 -73258133 + (A)n Simple_repeat Simple_repeat 1 34 0 305 306 164 0 chrX 103716075 103716209 -73257931 - MIR SINE MIR -37 225 70 186 103 0 0 chrX 103716662 103716691 -73257449 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2528 318 92 4 chrX 103716728 103717739 -73256401 + L2 LINE L2 1701 2800 -514 5399 195 49 69 chrX 103717757 103718134 -73256006 + L1MB7 LINE L1 2591 2974 -3172 2167 127 0 13 chrX 103718134 103718450 -73255690 + AluSx SINE Alu 1 312 0 5399 195 49 69 chrX 103718450 103718987 -73255153 + L1MB7 LINE L1 2974 3520 -2626 1407 127 101 0 chrX 103718987 103719254 -73254886 + L1MA3 LINE L1 6005 6298 -7 5399 195 49 69 chrX 103719254 103720129 -73254011 + L1MB7 LINE L1 3520 4345 -1801 2231 104 24 0 chrX 103720129 103720418 -73253722 + AluSx SINE Alu 1 296 -16 5399 195 49 69 chrX 103720418 103720507 -73253633 + L1MB7 LINE L1 4345 4434 -1712 2927 175 39 8 chrX 103720542 103720645 -73253495 + L1MB7 LINE L1 5540 5638 -546 202 56 56 0 chrX 103720645 103720681 -73253459 + (AAATG)n Simple_repeat Simple_repeat 3 40 0 2927 175 39 8 chrX 103720681 103721187 -73252953 + L1MB7 LINE L1 5638 6168 -16 579 231 172 6 chrX 103724599 103724768 -73249372 + MIR SINE MIR 2 198 -64 192 40 0 0 chrX 103726083 103726108 -73248032 + (CTGGGG)n Simple_repeat Simple_repeat 5 29 0 29 70 0 0 chrX 103726216 103726273 -73247867 + GC_rich Low_complexity Low_complexity 1 57 0 993 143 5 63 chrX 103729853 103730042 -73244098 - MER5B DNA MER1_type 0 178 1 221 327 75 9 chrX 103730053 103730160 -73243980 - MER5B DNA MER1_type -63 115 2 567 196 193 2 chrX 103730167 103730300 -73243840 + MER5A DNA MER1_type 17 183 -6 1044 159 22 0 chrX 103730304 103730486 -73243654 - MER5A DNA MER1_type -3 186 1 222 315 16 31 chrX 103734074 103734201 -73239939 - L2 LINE L2 -829 2485 2361 2185 122 0 22 chrX 103736249 103736568 -73237572 + AluJb SINE Alu 1 312 0 2118 120 0 26 chrX 103737162 103737470 -73236670 - AluSx SINE Alu -12 300 1 284 141 140 25 chrX 103737471 103737559 -73236581 - L1MB1 LINE L1 0 6168 6077 2394 94 3 0 chrX 103737668 103737976 -73236164 + AluSp SINE Alu 1 309 -4 2331 59 3 43 chrX 103738102 103738426 -73235714 - AluY SINE Alu 0 311 1 1286 131 0 30 chrX 103738429 103738628 -73235512 - AluSg/x SINE Alu -16 296 104 2302 100 0 22 chrX 103741516 103741835 -73232305 - AluSx SINE Alu 0 312 1 2041 195 96 6 chrX 103742854 103743548 -73230592 + L1M4 LINE L1 312 1250 -5292 4266 126 48 10 chrX 103744073 103744903 -73229237 + L1MA9 LINE L1 5333 6290 -22 222 109 43 22 chrX 103745383 103745444 -73228696 + (AAATG)n Simple_repeat Simple_repeat 1 62 0 3427 217 95 15 chrX 103746681 103748712 -73225428 + L1M4 LINE L1 16 2505 -4320 23 54 0 0 chrX 103749123 103749160 -73224980 + AT_rich Low_complexity Low_complexity 1 37 0 273 51 0 0 chrX 103749565 103749604 -73224536 - MADE1 DNA Mariner 0 80 42 29 70 0 0 chrX 103750316 103750373 -73223767 + AT_rich Low_complexity Low_complexity 1 57 0 228 365 83 31 chrX 103750414 103750510 -73223630 - L2 LINE L2 -62 3210 3110 198 333 202 12 chrX 103750889 103750973 -73223167 - L2 LINE L2 -30 3242 3143 314 258 16 62 chrX 103751319 103751402 -73222738 - L1MC4a LINE L1 -1873 5935 5859 4841 138 36 4 chrX 103751402 103752207 -73221933 - L1MC1 LINE L1 0 6333 5503 314 258 16 62 chrX 103752207 103752251 -73221889 - L1MC4a LINE L1 -1949 5859 5814 518 229 77 0 chrX 103752252 103752422 -73221718 - L1MD3 LINE L1 0 7995 7813 310 208 91 0 chrX 103752432 103752509 -73221631 - L1MC4a LINE L1 -302 5819 5736 418 333 61 9 chrX 103752557 103752671 -73221469 - MER91A DNA MER1_type 0 196 77 2005 118 3 14 chrX 103752898 103753185 -73220955 - AluSx SINE Alu -28 284 1 37 23 0 0 chrX 103753798 103753842 -73220298 + AT_rich Low_complexity Low_complexity 1 44 0 258 304 62 106 chrX 103756319 103756546 -73217594 + L2 LINE L2 3045 3261 -11 2096 133 0 7 chrX 103757737 103758038 -73216102 - AluJb SINE Alu -13 299 1 343 285 124 0 chrX 103758693 103758830 -73215310 - MIR SINE MIR -7 255 102 638 141 146 75 chrX 103759033 103759208 -73214932 - MER5A DNA MER1_type 0 189 1 503 331 0 0 chrX 103759225 103759352 -73214788 - L2 LINE L2 -5 3308 3182 195 261 145 0 chrX 103759446 103759515 -73214625 - L2 LINE L2 -252 3061 2983 2343 102 0 13 chrX 103760271 103760586 -73213554 - AluSx SINE Alu -1 311 1 23 0 0 0 chrX 103760588 103760611 -73213529 + AT_rich Low_complexity Low_complexity 1 23 0 1889 179 34 14 chrX 103760655 103761013 -73213127 + MLT1A1 LTR MaLR 1 365 0 214 308 39 13 chrX 103761461 103761539 -73212601 + MIR SINE MIR 31 110 -152 23 0 0 0 chrX 103761755 103761778 -73212362 + AT_rich Low_complexity Low_complexity 1 23 0 415 223 287 0 chrX 103762455 103762612 -73211528 - L2 LINE L2 -1 3312 3111 460 260 27 7 chrX 103763397 103763547 -73210593 + L1ME LINE L1 5561 5713 -408 277 263 84 0 chrX 103763548 103763643 -73210497 + L1ME LINE L1 5757 5859 -262 568 310 66 5 chrX 103764036 103764249 -73209891 - MIR SINE MIR -2 260 35 4467 156 31 3 chrX 103764494 103766095 -73208045 + L1PA16 LINE L1 4350 5987 -179 715 126 0 0 chrX 103766101 103766212 -73207928 + L1PA16 LINE L1 6051 6161 -5 505 365 24 35 chrX 103767707 103767997 -73206143 + L2 LINE L2 2827 3113 -159 723 251 217 0 chrX 103768022 103768229 -73205911 + MIR SINE MIR 1 252 -10 215 288 138 56 chrX 103768296 103768456 -73205684 + L2 LINE L2 3130 3302 -11 677 219 118 21 chrX 103768460 103768697 -73205443 + MIR SINE MIR 2 261 -1 1142 252 4 20 chrX 103769252 103769506 -73204634 + MIR SINE MIR 5 254 -8 1587 130 12 78 chrX 103769507 103769853 -73204287 - L1MB7 LINE L1 -1 6183 5861 1606 103 21 0 chrX 103769861 103770103 -73204037 - L1PA16 LINE L1 -9 6157 5911 * 2930 145 12 77 chrX 103770099 103770839 -73203301 - L1MB7 LINE L1 -307 5877 5186 222 294 183 65 chrX 103770975 103771128 -73203012 - L2 LINE L2 -8 3264 3094 457 271 77 24 chrX 103771460 103771630 -73202510 + Charlie8 DNA MER1_type 1 179 -2238 181 269 30 15 chrX 103771704 103771771 -73202369 - MIR3 SINE MIR -3 205 138 290 241 32 104 chrX 103771781 103771932 -73202208 - MIR SINE MIR -61 147 20 2478 52 7 19 chrX 103772048 103772355 -73201785 - AluY SINE Alu -8 303 1 1186 141 5 21 chrX 103772786 103772978 -73201162 - MER5A DNA MER1_type 0 189 1 434 150 75 67 chrX 103773293 103773413 -73200727 + MER103 DNA DNA 21 141 -25 258 262 0 16 chrX 103773568 103773629 -73200511 + MIR SINE MIR 16 75 -133 286 197 8 49 chrX 103773890 103774012 -73200128 + GA-rich Low_complexity Low_complexity 4 120 0 25 65 0 0 chrX 103774540 103774586 -73199554 + AT_rich Low_complexity Low_complexity 1 46 0 1898 158 3 23 chrX 103776463 103776773 -73197367 - AluJo SINE Alu -8 304 1 639 271 179 0 chrX 103777331 103777538 -73196602 + MIR SINE MIR 18 261 -1 675 248 108 19 chrX 103777540 103777754 -73196386 - MIR SINE MIR -15 247 15 412 226 32 0 chrX 103777869 103777962 -73196178 + MER6 DNA MER2_type 1 96 -769 3439 124 19 59 chrX 103777962 103778429 -73195711 + MER6 DNA MER2_type 249 686 -179 1491 93 0 15 chrX 103778429 103778660 -73195480 - AluJb SINE Alu 0 311 84 3439 124 19 59 chrX 103778660 103778834 -73195306 + MER6 DNA MER2_type 686 865 0 240 287 28 42 chrX 103778851 103778984 -73195156 + MIR SINE MIR 15 143 -65 688 263 51 18 chrX 103779594 103779811 -73194329 - MIR SINE MIR -8 254 31 321 178 178 54 chrX 103780417 103780658 -73193482 - L1MC5 LINE L1 -44 7917 7647 334 298 79 0 chrX 103780842 103780956 -73193184 - MIR SINE MIR -116 146 24 722 248 56 34 chrX 103781537 103782011 -73192129 - LTR33A LTR ERVL -3 520 2 582 192 0 8 chrX 103782611 103782731 -73191409 - L1MD3 LINE L1 -5 7990 7872 404 176 14 0 chrX 103782742 103782816 -73191324 - MIR SINE MIR -122 140 66 607 248 0 7 chrX 103783026 103783171 -73190969 + MER117 DNA MER1_type 2 145 -52 279 217 17 17 chrX 103783242 103783302 -73190838 - MIR SINE MIR -131 77 18 709 272 22 31 chrX 103783352 103783580 -73190560 - MIR SINE MIR -16 246 21 347 309 159 40 chrX 103784683 103785029 -73189111 + L2 LINE L2 2825 3211 -61 341 265 137 98 chrX 103785177 103785411 -73188729 - MIR SINE MIR -11 251 9 679 307 84 5 chrX 103785869 103786084 -73188056 + MIR SINE MIR 28 259 -3 255 191 0 0 chrX 103787618 103787681 -73186459 + (CA)n Simple_repeat Simple_repeat 2 64 0 1117 231 36 4 chrX 103787817 103788098 -73186042 + MER46C DNA MER2_type 1 290 -48 188 271 85 0 chrX 103788114 103788173 -73185967 + L2 LINE L2 3102 3165 -107 544 252 223 13 chrX 103788266 103788504 -73185636 - L3b LINE CR1 -190 1393 1106 750 316 12 12 chrX 103789795 103790042 -73184098 - MIR SINE MIR -1 261 15 4665 73 14 0 chrX 103790305 103790936 -73183204 - L1PA7 LINE L1 -1 6153 5514 243 211 19 0 chrX 103790978 103791030 -73183110 + L2 LINE L2 3261 3313 0 447 268 207 24 chrX 103791661 103791874 -73182266 - MIR SINE MIR -3 259 8 1730 247 123 18 chrX 103792499 103793207 -73180933 + MER20B DNA MER1_type 3 784 0 459 240 82 55 chrX 103794094 103794277 -73179863 - MER5A DNA MER1_type 0 189 2 366 285 35 49 chrX 103794277 103794397 -73179743 - MIR3 SINE MIR -56 152 35 292 319 0 35 chrX 103795430 103795543 -73178597 + MIR SINE MIR 27 135 -73 314 301 59 40 chrX 103795546 103795876 -73178264 + L1MC/D LINE L1 4886 5225 -921 720 278 46 0 chrX 103795941 103796135 -73178005 + L2 LINE L2 3111 3313 0 * 782 262 163 36 chrX 103796133 103796610 -73177530 + L1MC/D LINE L1 5270 5806 -581 833 254 95 13 chrX 103796619 103796851 -73177289 + MIR SINE MIR 12 262 0 356 240 84 31 chrX 103796853 103797066 -73177074 + L1ME4a LINE L1 5772 6006 -115 515 310 48 70 chrX 103797179 103797805 -73176335 + L2 LINE L2 85 696 -2618 722 217 76 45 chrX 103798048 103798246 -73175894 - MIR SINE MIR -30 232 29 569 332 22 31 chrX 103798245 103798468 -73175672 + L2 LINE L2 1053 1273 -2041 * 227 136 45 23 chrX 103798512 103798556 -73175584 + MIR SINE MIR 31 75 -187 771 293 5 0 chrX 103798629 103798817 -73175323 - MIR SINE MIR -11 251 63 432 330 84 44 chrX 103798814 103799135 -73175005 + L2 LINE L2 2571 2904 -410 * 343 289 86 37 chrX 103799180 103799367 -73174773 + L2 LINE L2 3032 3227 -45 188 83 0 28 chrX 103799387 103799423 -73174717 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 380 262 129 48 chrX 103800234 103800444 -73173696 - MIR SINE MIR -2 260 34 817 282 9 9 chrX 103800526 103800742 -73173398 - MIR SINE MIR -5 257 42 221 279 39 77 chrX 103801521 103801625 -73172515 - L2 LINE L2 -4 3268 3169 397 204 24 108 chrX 103801676 103801843 -73172297 - MIR SINE MIR -26 236 84 271 326 72 14 chrX 103801918 103802056 -73172084 - MIR SINE MIR -1 261 116 260 320 69 57 chrX 103802126 103802301 -73171839 - L2 LINE L2 -170 3102 2926 189 186 70 0 chrX 103803282 103803325 -73170815 - L2 LINE L2 -8 3264 3219 * 252 213 5 58 chrX 103803323 103803420 -73170720 + MIR SINE MIR 92 143 -65 * 967 307 62 22 chrX 103803398 103803815 -73170325 + L2 LINE L2 2850 3283 -30 1171 226 4 8 chrX 103804051 103804294 -73169846 - MIR SINE MIR -14 248 7 398 386 28 0 chrX 103804384 103804529 -73169611 + L2 LINE L2 3124 3272 0 328 290 32 0 chrX 103806258 103806351 -73167789 + MIR SINE MIR 166 261 -1 2270 99 0 0 chrX 103807236 103807548 -73166592 + AluSq SINE Alu 1 312 -1 370 32 48 32 chrX 103807551 103807614 -73166526 + (GGAGAA)n Simple_repeat Simple_repeat 4 67 0 783 220 48 29 chrX 103808179 103808388 -73165752 - MIR SINE MIR -14 248 36 252 184 0 0 chrX 103808490 103808539 -73165601 + (CTA)n Simple_repeat Simple_repeat 2 50 0 193 316 94 17 chrX 103808930 103809047 -73165093 + MIR3 SINE MIR 4 129 -79 416 242 248 7 chrX 103809073 103809226 -73164914 - MIR SINE MIR -4 258 69 915 244 70 16 chrX 103809782 103810024 -73164116 - MIR SINE MIR 0 262 8 327 152 61 30 chrX 103810079 103810145 -73163995 - L2 LINE L2 -1 3271 3204 324 48 0 0 chrX 103810171 103810213 -73163927 + (CA)n Simple_repeat Simple_repeat 1 42 0 628 309 44 44 chrX 103811164 103811481 -73162659 + L2 LINE L2 2430 2746 -568 713 184 58 23 chrX 103811521 103811695 -73162445 + MER5A DNA MER1_type 5 184 -5 854 181 41 18 chrX 103811711 103811882 -73162258 + MER5B DNA MER1_type 4 178 0 392 304 31 86 chrX 103811927 103812286 -73161854 + L2 LINE L2 2825 3163 -109 605 267 109 93 chrX 103812323 103812634 -73161506 + L2 LINE L2 2935 3250 -22 210 352 93 14 chrX 103812681 103812897 -73161243 + L2 LINE L2 2550 2782 -532 748 229 0 13 chrX 103812970 103813123 -73161017 - MER45A DNA AcHobo -4 174 24 234 283 119 55 chrX 103813270 103813489 -73160651 + L2 LINE L2 3075 3307 -6 2077 93 13 16 chrX 103813660 103813973 -73160167 - AluSx SINE Alu 0 312 1 853 259 121 3 chrX 103813984 103814281 -73159859 - L1MEd LINE L1 -5219 900 569 284 280 127 25 chrX 103814283 103814401 -73159739 + L2 LINE L2 3184 3313 0 1160 220 9 5 chrX 103814494 103814717 -73159423 - MIR SINE MIR 0 262 39 288 0 0 0 chrX 103815514 103815546 -73158594 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 322 0 0 chrX 103817096 103817211 -73156929 - MIR SINE MIR -65 143 29 270 250 83 75 chrX 103817382 103817502 -73156638 - L2 LINE L2 -14 3299 3179 183 274 48 0 chrX 103817863 103817925 -73156215 + MIR SINE MIR 193 257 -5 241 229 36 36 chrX 103817970 103818053 -73156087 - MIR SINE MIR -57 205 123 480 311 147 48 chrX 103818069 103818963 -73155177 - L2 LINE L2 -42 3230 2245 777 169 6 12 chrX 103819211 103819383 -73154757 + GA-rich Low_complexity Low_complexity 4 174 0 630 237 137 16 chrX 103820040 103820230 -73153910 - MIR SINE MIR -38 224 12 193 322 149 16 chrX 103820548 103820669 -73153471 + MER5A DNA MER1_type 50 186 -3 882 259 95 0 chrX 103821499 103821731 -73152409 - MIR SINE MIR 0 262 9 536 214 73 97 chrX 103825278 103825484 -73148656 + MIR SINE MIR 39 239 -23 286 226 21 75 chrX 103825614 103825707 -73148433 + MIR SINE MIR 70 157 -105 1010 223 188 0 chrX 103825707 103825989 -73148151 - MER46C DNA MER2_type 0 338 4 929 241 42 25 chrX 103826002 103826239 -73147901 - MIR SINE MIR -10 252 11 1195 240 82 7 chrX 103826259 103826408 -73147732 - MER102b DNA MER1_type -1101 327 191 258 32 0 0 chrX 103826408 103826439 -73147701 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chrX 103826438 103826479 -73147661 + (TG)n Simple_repeat Simple_repeat 2 42 0 1195 240 82 7 chrX 103826439 103826633 -73147507 - MER102b DNA MER1_type -1237 191 1 415 172 159 0 chrX 103827263 103827391 -73146749 - MIR SINE MIR -15 247 97 296 207 112 117 chrX 103827454 103827633 -73146507 - MER5A DNA MER1_type 0 189 12 295 240 219 21 chrX 103828090 103828186 -73145954 - L3 LINE CR1 -883 694 580 474 325 35 39 chrX 103828940 103829143 -73144997 - L3 LINE CR1 -1256 321 120 409 291 17 8 chrX 103829268 103829385 -73144755 - L3 LINE CR1 -234 1343 1226 * 650 292 45 45 chrX 103829383 103829626 -73144514 + MIR SINE MIR 17 259 -3 23 54 0 0 chrX 103830691 103830728 -73143412 + AT_rich Low_complexity Low_complexity 1 37 0 524 261 36 12 chrX 103830734 103830899 -73143241 - L1ME4a LINE L1 -20 6101 5933 233 243 37 88 chrX 103830922 103831058 -73143082 - L1ME4a LINE L1 -293 5828 5700 835 184 29 11 chrX 103831063 103831237 -73142903 + MIR SINE MIR 78 254 -8 216 0 0 0 chrX 103831302 103831326 -73142814 + (T)n Simple_repeat Simple_repeat 1 24 0 640 291 11 0 chrX 103831401 103831583 -73142557 + MIR SINE MIR 79 262 0 438 270 35 70 chrX 103831721 103831921 -73142219 + MIR SINE MIR 30 222 -40 207 146 0 0 chrX 103832860 103832901 -73141239 + (CGGG)n Simple_repeat Simple_repeat 2 42 0 603 312 111 17 chrX 103833315 103833549 -73140591 + MIR SINE MIR 5 260 -2 230 286 57 0 chrX 103833993 103834063 -73140077 + MIR SINE MIR 134 207 -55 193 154 0 26 chrX 103834099 103834138 -73140002 + L2 LINE L2 3258 3295 -18 211 254 149 26 chrX 103838857 103838971 -73135169 - L2 LINE L2 -550 2764 2637 277 333 104 0 chrX 103840345 103840480 -73133660 + HAL1b LINE L1 1189 1337 -11 181 314 198 16 chrX 103840559 103840680 -73133460 - L2 LINE L2 -2 3311 3169 294 276 88 68 chrX 103840789 103840981 -73133159 - L2 LINE L2 -562 2752 2557 1874 148 0 16 chrX 103843144 103843461 -73130679 - AluSx SINE Alu 0 312 1 283 303 34 86 chrX 103843462 103843637 -73130503 + MIR SINE MIR 41 206 -56 1102 210 65 129 chrX 103843682 103843971 -73130169 + MER34B LTR ERV1 1 307 -258 277 33 67 17 chrX 103843971 103844031 -73130109 + (TA)n Simple_repeat Simple_repeat 1 63 0 607 108 0 0 chrX 103844034 103844117 -73130023 - L1PB3 LINE L1 -18 6136 6054 1102 210 65 129 chrX 103844117 103844427 -73129713 + MER34B LTR ERV1 309 565 0 942 286 0 5 chrX 103844608 103844832 -73129308 - MIR SINE MIR -16 246 24 340 291 89 17 chrX 103845485 103845664 -73128476 + L1MEd LINE L1 4 195 -5924 23 0 0 0 chrX 103846013 103846036 -73128104 + AT_rich Low_complexity Low_complexity 1 23 0 713 106 12 112 chrX 103846038 103846102 -73128038 - L1MB7 LINE L1 -9 6175 6106 1946 161 0 3 chrX 103846102 103846407 -73127733 + AluJo SINE Alu 1 304 -8 713 106 12 112 chrX 103846407 103846512 -73127628 - L1MB7 LINE L1 -78 6106 6023 441 257 29 29 chrX 103847087 103847223 -73126917 + MIR3 SINE MIR 3 138 -70 21 0 0 0 chrX 103847428 103847449 -73126691 + AT_rich Low_complexity Low_complexity 1 21 0 2247 123 0 0 chrX 103847861 103848163 -73125977 + AluSx SINE Alu 1 302 -10 37 23 0 0 chrX 103848708 103848752 -73125388 + AT_rich Low_complexity Low_complexity 1 44 0 1396 147 52 33 chrX 103849006 103849312 -73124828 + MER33 DNA MER1_type 10 321 -3 287 349 8 38 chrX 103849833 103849965 -73124175 + MIR SINE MIR 50 177 -85 625 260 49 14 chrX 103850057 103850280 -73123860 - MARNA DNA Mariner -149 437 207 255 330 87 12 chrX 103850495 103850668 -73123472 - MIR SINE MIR -50 212 27 318 248 83 37 chrX 103850740 103850849 -73123291 - MIR SINE MIR -70 138 25 1848 138 36 22 chrX 103850920 103851265 -73122875 - L1MB8 LINE L1 -5 6173 5821 183 42 0 0 chrX 103851265 103851289 -73122851 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 17211 45 6 0 chrX 103851313 103854220 -73119920 - L1PA7 LINE L1 -13 6141 3221 180 0 0 0 chrX 103855949 103855969 -73118171 + (TTCA)n Simple_repeat Simple_repeat 3 22 0 2106 193 35 17 chrX 103856212 103856693 -73117447 + MLT1D LTR MaLR 16 505 0 536 203 79 73 chrX 103856711 103856888 -73117252 + MER5B DNA MER1_type 1 178 0 1135 118 64 0 chrX 103857494 103857681 -73116459 + MER2 DNA MER2_type 8 206 -139 189 121 0 0 chrX 103857693 103857726 -73116414 + (TTA)n Simple_repeat Simple_repeat 2 34 0 848 248 0 52 chrX 103858163 103858373 -73115767 - MER63A DNA MER1_type -5 205 7 780 303 66 58 chrX 103858410 103858803 -73115337 + L3 LINE CR1 1179 1574 -3 1109 210 43 58 chrX 103859769 103860098 -73114042 + L1M4 LINE L1 18 341 -6201 513 186 0 29 chrX 103860109 103860211 -73113929 + AluJ/FLAM SINE Alu 1 99 -213 1474 214 14 51 chrX 103860513 103861023 -73113117 + L1M4 LINE L1 3412 3902 -2742 2523 170 0 0 chrX 103861025 103861449 -73112691 - L1PA15 LINE L1 -3 6813 6390 6985 137 25 0 chrX 103861450 103862549 -73111591 - L1M1 LINE L1 -5394 2171 1045 5427 174 15 6 chrX 103862551 103864167 -73109973 - L1PA15 LINE L1 -412 6404 4777 1418 220 21 16 chrX 103864168 103864541 -73109599 - L1PA15 LINE L1 -3757 3040 2666 1175 248 24 0 chrX 103864542 103864840 -73109300 - L1PA15 LINE L1 -6177 610 306 1076 301 69 20 chrX 103865231 103865637 -73108503 - L2 LINE L2 -1 3312 2887 6836 58 9 16 chrX 103865783 103866521 -73107619 + L1PA7 LINE L1 4745 5486 -668 2250 82 0 23 chrX 103866521 103866826 -73107314 + AluY SINE Alu 1 298 -13 2518 60 0 3 chrX 103866827 103867127 -73107013 + AluY SINE Alu 1 299 -12 6836 58 9 16 chrX 103867127 103867794 -73106346 + L1PA7 LINE L1 5485 6149 -5 5814 96 9 8 chrX 103867795 103868663 -73105477 + L1PA11 LINE L1 5303 6171 -3 2909 194 60 9 chrX 103868856 103870223 -73103917 - L1MB3 LINE L1 -3 6180 4551 1993 116 0 31 chrX 103870223 103870516 -73103624 - AluSx SINE Alu -14 298 15 13704 154 41 26 chrX 103870516 103874019 -73100121 - L1P5 LINE L1 -465 6402 2954 2074 105 0 18 chrX 103874019 103874305 -73099835 - AluSx SINE Alu -18 294 14 13704 154 41 26 chrX 103874305 103874465 -73099675 - L1P5 LINE L1 -3913 2954 2798 198 0 0 0 chrX 103874465 103874487 -73099653 + (GGATG)n Simple_repeat Simple_repeat 2 23 0 13704 154 41 26 chrX 103874487 103876490 -73097650 - L1P5 LINE L1 -4069 2798 621 999 163 10 0 chrX 103876478 103876674 -73097466 - L1P5 LINE L1 -6663 200 3 * 3354 213 21 55 chrX 103876686 103877093 -73097047 - L1 LINE L1 -1593 5513 5094 1205 55 0 27 chrX 103877093 103877276 -73096864 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3354 213 21 55 chrX 103877276 103878193 -73095947 - L1 LINE L1 -2012 5094 4292 188 61 61 0 chrX 103878207 103878240 -73095900 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 516 268 0 8 chrX 103878244 103878371 -73095769 - L1 LINE L1 -5637 1393 1268 203 319 167 34 chrX 103878873 103879136 -73095004 - L2 LINE L2 -800 2514 2217 2260 91 0 13 chrX 103879890 103880213 -73093927 + AluSg SINE Alu 1 319 0 962 277 46 21 chrX 103880784 103881069 -73093071 + L2 LINE L2 3021 3312 -1 757 240 36 36 chrX 103881496 103881692 -73092448 + MIR SINE MIR 67 262 0 1596 186 60 17 chrX 103882211 103882560 -73091580 - MLT1A1 LTR MaLR 0 365 2 355 413 30 6 chrX 103882964 103883293 -73090847 - L2 LINE L2 -421 2893 2557 646 193 0 8 chrX 103883353 103883472 -73090668 + L2 LINE L2 3189 3306 -7 23 0 0 0 chrX 103883947 103883970 -73090170 + AT_rich Low_complexity Low_complexity 1 23 0 530 198 89 0 chrX 103885297 103885398 -73088742 + MER81 DNA DNA 5 114 0 518 284 82 5 chrX 103885460 103885654 -73088486 + MIR SINE MIR 54 262 0 2408 93 0 0 chrX 103885661 103885963 -73088177 + AluSg SINE Alu 1 302 -8 476 305 63 75 chrX 103886374 103886817 -73087323 + L1MC1 LINE L1 490 927 -5192 554 371 11 14 chrX 103886830 103887178 -73086962 + L1MEc LINE L1 37 383 -6013 4093 256 86 15 chrX 103887534 103889179 -73084961 + L1M4 LINE L1 3086 4847 -1299 451 209 20 20 chrX 103889243 103889396 -73084744 + CT-rich Low_complexity Low_complexity 1 153 0 1924 150 7 7 chrX 103889396 103889702 -73084438 - AluSg SINE Alu -4 306 1 458 194 8 39 chrX 103889705 103889834 -73084306 + L1M4 LINE L1 4963 5087 -1059 * 6666 197 48 16 chrX 103889831 103892408 -73081732 + L1MC1 LINE L1 3582 6267 -49 1963 107 0 0 chrX 103892408 103892712 -73081428 - AluSx SINE Alu 0 312 40 6666 197 48 16 chrX 103892712 103892758 -73081382 + L1MC1 LINE L1 6267 6310 -6 562 196 51 19 chrX 103892807 103892965 -73081175 + L1M4 LINE L1 4950 5112 -1034 743 178 82 163 chrX 103893006 103893062 -73081078 - MLT2B1 LTR ERVL -3 411 352 333 0 0 0 chrX 103893062 103893099 -73081041 + (CA)n Simple_repeat Simple_repeat 2 38 0 743 178 82 163 chrX 103893099 103893442 -73080698 - MLT2B1 LTR ERVL -62 352 44 391 239 215 39 chrX 103895193 103895398 -73078742 + MLT1J2 LTR MaLR 203 443 -7 1315 290 52 18 chrX 103895529 103896033 -73078107 + LTR33 LTR ERVL 1 521 0 694 260 5 47 chrX 103896316 103896508 -73077632 + MIR SINE MIR 8 191 -71 443 136 0 11 chrX 103896734 103896822 -73077318 + (GGAA)n Simple_repeat Simple_repeat 4 90 0 259 54 27 0 chrX 103896823 103896860 -73077280 + (GA)n Simple_repeat Simple_repeat 1 38 0 941 257 80 8 chrX 103896875 103897112 -73077028 + MIR SINE MIR 6 259 -3 234 204 0 0 chrX 103897494 103897538 -73076602 + L2 LINE L2 3262 3305 -8 432 297 51 7 chrX 103897583 103897721 -73076419 - MIR SINE MIR -74 188 45 1930 118 44 80 chrX 103897779 103898168 -73075972 - THE1C LTR MaLR 0 375 1 756 268 47 9 chrX 103899968 103900181 -73073959 + MER58A DNA MER1_type 1 221 -3 241 333 81 20 chrX 103901828 103901927 -73072213 + L2 LINE L2 3168 3272 0 302 284 92 35 chrX 103902536 103902677 -73071463 - MIR3 SINE MIR -58 150 2 2187 103 0 13 chrX 103906148 103906448 -73067692 - AluSg SINE Alu -14 296 1 2535 149 26 14 chrX 103908858 103909287 -73064853 + Tigger2a DNA MER2_type 1 434 0 924 202 17 6 chrX 103909483 103909656 -73064484 + MER96 DNA MER1_type 1 175 0 435 191 11 0 chrX 103909661 103909750 -73064390 + MLT1H LTR MaLR 460 549 0 2185 113 14 74 chrX 103910084 103910516 -73063624 - Ricksha DNA DNA -7 3244 2839 5134 191 43 1 chrX 103911018 103912139 -73062001 + L1MA4A LINE L1 3377 4544 -1602 1850 79 0 21 chrX 103912264 103912505 -73061635 + AluY SINE Alu 1 236 -75 198 0 0 0 chrX 103912506 103912528 -73061612 + (A)n Simple_repeat Simple_repeat 1 22 0 4054 152 21 21 chrX 103912580 103913966 -73060174 + L1MA4A LINE L1 4537 5929 -374 227 238 38 50 chrX 103913966 103914046 -73060094 - L3b LINE CR1 -195 1388 1310 611 282 17 6 chrX 103914882 103915063 -73059077 + MIR SINE MIR 77 259 -3 279 281 22 86 chrX 103915267 103915406 -73058734 + MIR SINE MIR 19 148 -60 591 260 73 17 chrX 103916271 103916448 -73057692 + MIR3 SINE MIR 16 202 -6 297 321 102 42 chrX 103917060 103917275 -73056865 + L2 LINE L2 2868 3095 -177 1130 128 10 0 chrX 103917355 103917550 -73056590 + L1MA5A LINE L1 6097 6293 -4 979 218 79 30 chrX 103917652 103917955 -73056185 - MLT1J1 LTR MaLR -128 318 1 1405 178 0 9 chrX 103918787 103919017 -73055123 + AluJo SINE Alu 1 228 -84 587 121 0 61 chrX 103919041 103919140 -73055000 + AluJo SINE Alu 206 298 -14 1934 58 4 4 chrX 103919944 103920184 -73053956 - AluY SINE Alu -16 295 56 247 282 0 0 chrX 103920424 103920495 -73053645 + GA-rich Low_complexity Low_complexity 2 72 0 426 279 62 19 chrX 103921262 103921423 -73052717 + MIR SINE MIR 47 214 -48 25 31 0 0 chrX 103921433 103921465 -73052675 + AT_rich Low_complexity Low_complexity 1 32 0 729 179 0 37 chrX 103921523 103921657 -73052483 + FLAM_A SINE Alu 1 129 -4 1110 61 8 0 chrX 103921961 103922092 -73052048 + AluSp SINE Alu 1 132 -181 4111 226 25 59 chrX 103922093 103923212 -73050928 + L1MD2 LINE L1 3875 5031 -1115 1019 207 22 0 chrX 103923212 103923434 -73050706 - L1PA16 LINE L1 -2 6164 5938 4111 226 25 59 chrX 103923434 103923515 -73050625 + L1MD2 LINE L1 5031 5113 -1033 6352 73 11 5 chrX 103923515 103924620 -73049520 - L1PA13 LINE L1 -5 6158 5033 4111 226 25 59 chrX 103924620 103924917 -73049223 + L1MD2 LINE L1 5113 5321 -825 2899 73 42 5 chrX 103924917 103925341 -73048799 - L1PA16 LINE L1 -411 5743 5304 2294 193 21 6 chrX 103925409 103925922 -73048218 + L1MD2 LINE L1 5320 5840 -402 2250 113 0 0 chrX 103925926 103925944 -73048196 - AluSg SINE Alu -10 300 283 429 20 0 0 chrX 103925944 103925994 -73048146 + (TA)n Simple_repeat Simple_repeat 2 51 0 2250 113 0 0 chrX 103925994 103926275 -73047865 - AluSg SINE Alu -26 284 1 351 0 0 0 chrX 103926275 103926314 -73047826 + (T)n Simple_repeat Simple_repeat 1 39 0 3809 94 25 50 chrX 103926320 103926960 -73047180 - L1PA12 LINE L1 -45 6123 5500 1888 219 47 7 chrX 103926962 103927414 -73046726 + L1MD2 LINE L1 5868 6337 -22 277 250 221 10 chrX 103927608 103927712 -73046428 + MIR SINE MIR 28 153 -109 247 317 13 55 chrX 103927852 103928075 -73046065 - MER20B DNA MER1_type 0 219 4 193 256 38 119 chrX 103928780 103928809 -73045331 + L2 LINE L2 2490 2520 -794 1317 199 107 30 chrX 103928809 103929175 -73044965 + MSTD LTR MaLR 1 394 -2 193 256 38 119 chrX 103929175 103929305 -73044835 + L2 LINE L2 2520 2636 -678 359 243 144 46 chrX 103929766 103929939 -73044201 - L2 LINE L2 -47 3266 3077 890 275 57 33 chrX 103930025 103930450 -73043690 - L1MC4 LINE L1 -62 7980 7546 1223 195 105 54 chrX 103930453 103930823 -73043317 + MLT1B LTR MaLR 1 389 -1 1176 104 6 11 chrX 103930859 103931042 -73043098 + L1PA4 LINE L1 1 182 -5964 * 12838 48 8 0 chrX 103931012 103932712 -73041428 + L1PA4 LINE L1 894 2607 -3539 20258 41 2 0 chrX 103932712 103935997 -73038143 + L1PA4 LINE L1 2865 6154 -1 360 291 35 0 chrX 103936167 103936244 -73037896 - L2 LINE L2 -5 3267 3188 948 258 57 4 chrX 103936244 103936488 -73037652 + MIR SINE MIR 1 257 -5 275 135 0 58 chrX 103936653 103936705 -73037435 - L2 LINE L2 -250 3063 3015 311 335 57 33 chrX 103937747 103937992 -73036148 - MLT1K LTR MaLR -159 429 179 400 304 5 55 chrX 103938189 103938399 -73035741 - MIR SINE MIR -44 218 28 10670 148 16 69 chrX 103938640 103942105 -73032035 - L1PA8 LINE L1 -8 6479 3130 1641 180 40 39 chrX 103942105 103943083 -73031057 - SVA Other Other -518 868 432 10670 148 16 69 chrX 103943083 103946056 -73028084 - L1PA8 LINE L1 -3357 3130 1 485 324 21 25 chrX 103946080 103946364 -73027776 - L1ME3A LINE L1 -286 5884 5602 204 271 43 29 chrX 103946374 103946444 -73027696 + MIR SINE MIR 69 139 -69 1724 150 34 0 chrX 103946478 103946771 -73027369 + Tigger3(Golem) DNA MER2_type 2727 3029 0 957 269 88 45 chrX 103946863 103947283 -73026857 - L2 LINE L2 -582 2732 2295 366 271 37 70 chrX 103947285 103947499 -73026641 + MIR SINE MIR 46 252 -10 2160 134 14 6 chrX 103947818 103948177 -73025963 - L1MB3 LINE L1 -3 6180 5819 3630 118 20 6 chrX 103948177 103948727 -73025413 + L1PA15 LINE L1 5605 6162 -3 3346 191 17 22 chrX 103948952 103950222 -73023918 - L1MB3 LINE L1 -352 5831 4564 1697 206 99 42 chrX 103951004 103951538 -73022602 - MLT1F1 LTR MaLR 0 567 1 582 347 137 31 chrX 103951608 103951965 -73022175 + L2 LINE L2 2873 3267 -5 1600 263 80 41 chrX 103953455 103954276 -73019864 - L2 LINE L2 -4 3309 2467 1742 138 3 63 chrX 103954276 103954420 -73019720 - L1MA7 LINE L1 -220 6071 5920 2362 96 0 10 chrX 103954420 103954732 -73019408 - AluSg SINE Alu 0 310 2 1742 138 3 63 chrX 103954732 103954965 -73019175 - L1MA7 LINE L1 -371 5920 5717 835 204 30 46 chrX 103954965 103955249 -73018891 + L1MA7 LINE L1 6009 6289 -2 443 276 45 8 chrX 103955257 103955391 -73018749 - L2 LINE L2 -843 2471 2333 1178 208 14 0 chrX 103955638 103955859 -73018281 - MER58A DNA MER1_type 0 224 1 289 325 25 6 chrX 103956842 103957002 -73017138 - L1ME LINE L1 -342 5828 5666 22 0 0 0 chrX 103958358 103958380 -73015760 + AT_rich Low_complexity Low_complexity 1 22 0 1041 93 49 113 chrX 103958468 103958715 -73015425 - L1MA8 LINE L1 -4 6287 6057 497 196 0 0 chrX 103958731 103958843 -73015297 - MER113 DNA MER1_type? -409 112 1 21 36 0 0 chrX 103958943 103958971 -73015169 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chrX 103959320 103959350 -73014790 + AT_rich Low_complexity Low_complexity 1 30 0 1278 285 34 6 chrX 103959591 103959945 -73014195 - MLT1I LTR MaLR 0 409 46 811 195 166 10 chrX 103959998 103960203 -73013937 - MIR SINE MIR -24 238 2 310 248 8 51 chrX 103961131 103961248 -73012892 - MIR SINE MIR -62 200 89 * 456 221 71 26 chrX 103961236 103961349 -73012791 + L2 LINE L2 3155 3272 0 182 302 57 0 chrX 103962049 103962102 -73012038 + L3b LINE CR1 1434 1489 -94 201 330 45 23 chrX 103962356 103962444 -73011696 + L2 LINE L2 3179 3268 -4 418 296 70 28 chrX 103962693 103962835 -73011305 - L2 LINE L2 -1 3271 3124 21 0 0 0 chrX 103963037 103963058 -73011082 + AT_rich Low_complexity Low_complexity 1 21 0 1738 197 28 14 chrX 103963088 103963519 -73010621 + Charlie4a DNA MER1_type 72 508 0 784 144 123 0 chrX 103964825 103964988 -73009152 - MER5A DNA MER1_type 0 189 4 470 216 0 10 chrX 103965018 103965120 -73009020 - MIR SINE MIR 0 262 162 4278 112 44 32 chrX 103966052 103967148 -73006992 + MER11A LTR ERVK 1 1067 -4 548 227 298 25 chrX 103967391 103967629 -73006511 + L2 LINE L2 2999 3301 -12 312 120 0 0 chrX 103967631 103967681 -73006459 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 31 26 0 0 chrX 103967963 103968001 -73006139 + AT_rich Low_complexity Low_complexity 1 38 0 194 339 15 0 chrX 103968096 103968161 -73005979 + L3 LINE CR1 1510 1575 -2 22 0 0 0 chrX 103968264 103968286 -73005854 + AT_rich Low_complexity Low_complexity 1 22 0 325 241 0 13 chrX 103969051 103969130 -73005010 - MIR SINE MIR -4 258 181 1582 166 14 0 chrX 103969130 103969408 -73004732 + MER49 LTR ERV1 1 282 -641 614 214 7 14 chrX 103969443 103969588 -73004552 + MER4D LTR ERV1 551 694 -209 846 191 22 38 chrX 103969667 103969902 -73004238 + MER4D LTR ERV1 445 903 0 620 226 71 18 chrX 103969902 103970070 -73004070 - MIR SINE MIR -78 184 8 636 251 35 97 chrX 103970615 103970874 -73003266 + MIR SINE MIR 20 262 0 3434 163 20 33 chrX 103970918 103971617 -73002523 + L1MB7 LINE L1 5494 6183 -1 431 247 82 0 chrX 103971875 103971972 -73002168 + L2 LINE L2 3209 3313 0 476 289 75 21 chrX 103971986 103972173 -73001967 + MIR SINE MIR 6 202 -60 264 235 0 59 chrX 103972385 103972453 -73001687 - MIR3 SINE MIR -12 196 133 221 289 58 91 chrX 103972453 103972506 -73001634 - L3 LINE CR1 -8 1569 1453 22 0 0 0 chrX 103973021 103973043 -73001097 + AT_rich Low_complexity Low_complexity 1 22 0 299 96 19 0 chrX 103973292 103973344 -73000796 + (CA)n Simple_repeat Simple_repeat 2 54 0 322 281 159 28 chrX 103973711 103973945 -73000195 + L1MDa LINE L1 2414 2675 -3865 251 341 62 11 chrX 103973961 103974234 -72999906 + L1MDa LINE L1 2735 3021 -3519 1221 121 15 0 chrX 103974268 103974466 -72999674 + L1MC1 LINE L1 5886 6086 -247 1664 152 112 37 chrX 103974484 103975033 -72999107 - MER4A LTR ERV1 -18 447 1 383 118 0 29 chrX 103975041 103975109 -72999031 - MER4A-int LTR ERV1 -1 6597 6532 279 21 62 0 chrX 103975303 103975351 -72998789 + (TA)n Simple_repeat Simple_repeat 2 52 0 383 235 20 10 chrX 103975351 103975449 -72998691 + PABL_B-int LTR ERV1 6585 6683 -439 563 122 0 37 chrX 103975779 103975886 -72998254 - MER4A LTR ERV1 -559 105 3 1240 162 28 24 chrX 103975886 103976139 -72998001 + L1MC1 LINE L1 6080 6333 0 319 284 65 26 chrX 103976150 103976460 -72997680 + L1MDa LINE L1 3057 3378 -3162 269 293 12 0 chrX 103976461 103976543 -72997597 - MER63 DNA MER1_type 0 1061 979 354 216 14 0 chrX 103976546 103976620 -72997520 - MER63 DNA MER1_type -93 743 43 353 312 9 0 chrX 103976688 103976797 -72997343 + L1MDa LINE L1 3385 3494 -3046 2188 166 49 119 chrX 103976828 103977032 -72997108 + MER63C DNA MER1_type 253 470 -590 2028 132 0 0 chrX 103977032 103977320 -72996820 + AluSx SINE Alu 1 288 -24 2188 166 49 119 chrX 103977320 103977495 -72996645 + MER63C DNA MER1_type 470 656 -404 2343 89 0 3 chrX 103977495 103977797 -72996343 - AluSx SINE Alu -10 302 2 2188 166 49 119 chrX 103977797 103978145 -72995995 + MER63C DNA MER1_type 656 930 0 831 278 56 57 chrX 103978148 103978212 -72995928 + L1MDa LINE L1 3495 3558 -2982 2294 67 3 3 chrX 103978212 103978497 -72995643 - AluY SINE Alu -26 285 1 831 278 56 57 chrX 103978497 103979184 -72994956 + L1MDa LINE L1 3558 4245 -2295 1776 323 33 20 chrX 103979218 103980343 -72993797 + HERV16 LTR ERVL 2452 3316 -1680 307 297 0 9 chrX 103980365 103980476 -72993664 + L1MDa LINE L1 4805 4914 -1626 405 258 109 52 chrX 103980497 103980827 -72993313 + L1MDa LINE L1 4971 5319 -1221 1255 201 16 38 chrX 103980832 103981254 -72992886 - L1M3 LINE L1 -581 5599 5188 8243 154 16 22 chrX 103981262 103982496 -72991644 - L1MA3 LINE L1 0 6305 5066 1822 171 0 25 chrX 103982496 103982812 -72991328 - AluJb SINE Alu -4 308 1 8243 154 16 22 chrX 103982812 103983474 -72990666 - L1MA3 LINE L1 -1239 5066 4402 2393 85 0 22 chrX 103983474 103983791 -72990349 - AluY SINE Alu -1 310 1 8243 154 16 22 chrX 103983791 103984676 -72989464 - L1MA3 LINE L1 -1903 4402 3542 7485 173 29 13 chrX 103984677 103985880 -72988260 + L1P3 LINE L1 3 1307 -5154 189 74 0 0 chrX 103985880 103985907 -72988233 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7485 173 29 13 chrX 103985907 103986788 -72987352 + L1P3 LINE L1 1307 2173 -4288 7181 28 10 0 chrX 103986789 103987658 -72986482 - L1PA4 LINE L1 0 6155 5275 5348 30 0 0 chrX 103987658 103988283 -72985857 - L1PA3 LINE L1 0 6155 5531 7181 28 10 0 chrX 103988283 103988516 -72985624 - L1PA4 LINE L1 -880 5275 5046 * 8074 110 7 37 chrX 103988514 103989935 -72984205 + L1P3 LINE L1 2156 3534 -2927 1800 255 62 24 chrX 104190106 104190256 -72783884 - L2 LINE L2 -243 3070 2927 2695 166 70 19 chrX 104190256 104190786 -72783354 - MER89 LTR ERV1 -2 557 1 1800 255 62 24 chrX 104190786 104191279 -72782861 - L2 LINE L2 -386 2927 2394 3303 69 0 9 chrX 104192778 104193230 -72780910 - LTR7 LTR ERV1 -2 448 1 2442 92 45 13 chrX 104193230 104193610 -72780530 - HERVH LTR ERV1 0 7713 7322 1403 130 19 0 chrX 104193608 104193824 -72780316 - HERVH LTR ERV1 -1894 5819 5600 * 4307 149 1 1 chrX 104193825 104194487 -72779653 - HERVH LTR ERV1 -2564 5149 4488 3442 109 0 6 chrX 104194489 104194994 -72779146 - HERVH LTR ERV1 -3720 3993 3492 * 20487 89 57 31 chrX 104194984 104198191 -72775949 - HERVH LTR ERV1 -4423 3290 1 3356 60 0 9 chrX 104198193 104198645 -72775495 - LTR7 LTR ERV1 -2 448 1 822 188 91 0 chrX 104198706 104198882 -72775258 + LTR47A LTR ERVL 261 452 0 2412 138 76 15 chrX 104198940 104198975 -72775165 + MER4E LTR ERV1 1 32 -734 2123 119 50 11 chrX 104198975 104199337 -72774803 + MER51B LTR ERV1 1 376 -1 2412 138 76 15 chrX 104199337 104199877 -72774263 + MER4E LTR ERV1 32 766 0 266 316 127 74 chrX 104200268 104200661 -72773479 - L2 LINE L2 -2 3270 2857 425 210 25 0 chrX 104200738 104200819 -72773321 + HAL1 LINE L1 802 884 -1623 269 254 77 23 chrX 104200837 104200967 -72773173 - L1MA10 LINE L1 -23 6311 6175 5442 206 59 41 chrX 104200975 104202706 -72771434 - L1MC/D LINE L1 -743 5472 3794 4124 113 70 57 chrX 104202710 104203470 -72770670 - LTR1 LTR ERV1 0 785 16 551 188 0 0 chrX 104203470 104203582 -72770558 - L1MC/D LINE L1 -2463 3752 3641 848 217 118 10 chrX 104203582 104203785 -72770355 - AluJo SINE Alu -4 308 84 346 258 10 0 chrX 104203786 104203883 -72770257 - L1MC/D LINE L1 -2572 3643 3546 252 122 0 0 chrX 104203889 104203930 -72770210 + (CA)n Simple_repeat Simple_repeat 1 41 0 7602 248 48 15 chrX 104203936 104207384 -72766756 - L1MEc LINE L1 -2673 3542 20 230 280 40 10 chrX 104207429 104207529 -72766611 - L1MC4 LINE L1 -17 8025 7923 511 260 23 28 chrX 104207652 104207870 -72766270 - L1ME2 LINE L1 0 6170 5952 446 154 0 103 chrX 104207891 104208008 -72766132 - Charlie5 DNA MER1_type 0 2623 2519 4972 190 24 7 chrX 104208020 104209533 -72764607 + L1M3f LINE L1 6 3627 -2701 235 128 26 141 chrX 104209533 104209611 -72764529 + L1MA4 LINE L1 5505 5573 -727 4144 148 11 5 chrX 104209615 104210353 -72763787 + L1MA4 LINE L1 5559 6300 0 961 199 18 9 chrX 104210353 104210581 -72763559 - MER33 DNA MER1_type -248 76 1 284 182 52 26 chrX 104210581 104210658 -72763482 - L1ME2 LINE L1 -235 5929 5851 25 31 0 0 chrX 104210660 104210692 -72763448 + AT_rich Low_complexity Low_complexity 1 32 0 416 233 67 92 chrX 104210860 104211140 -72763000 + L1MEc LINE L1 2069 2309 -3906 1632 181 7 7 chrX 104211140 104211422 -72762718 + AluJo SINE Alu 5 286 -26 416 233 67 92 chrX 104211422 104211536 -72762604 + L1MEc LINE L1 2309 2424 -3791 1128 241 83 41 chrX 104211701 104212137 -72762003 - MER110A LTR ERV1 -12 456 3 372 296 17 11 chrX 104212705 104212884 -72761256 + (TA)n Simple_repeat Simple_repeat 1 180 0 404 303 80 112 chrX 104212889 104212907 -72761233 - L3 LINE CR1 -9 1568 1551 2538 59 0 0 chrX 104212907 104213212 -72760928 + AluY SINE Alu 1 305 -6 404 303 80 112 chrX 104213212 104213278 -72760862 - L3 LINE CR1 -26 1551 1484 704 290 35 12 chrX 104213278 104213533 -72760607 + MIR SINE MIR 2 262 0 404 303 80 112 chrX 104213533 104213823 -72760317 - L3 LINE CR1 -93 1484 1205 8960 140 11 9 chrX 104214455 104217040 -72757100 - L1MA2 LINE L1 0 6304 3714 1011 280 131 22 chrX 104217448 104217979 -72756161 + L2 LINE L2 2231 2876 -438 555 221 0 0 chrX 104218084 104218211 -72755929 + (TA)n Simple_repeat Simple_repeat 2 128 0 198 103 0 0 chrX 104218391 104218420 -72755720 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 315 271 102 62 chrX 104219235 104219412 -72754728 + MIR SINE MIR 8 191 -71 1789 134 42 51 chrX 104219451 104219764 -72754376 + AluJb SINE Alu 1 310 -2 359 158 13 13 chrX 104220598 104220674 -72753466 + MER116 DNA Mariner 1 76 -4 299 296 19 37 chrX 104224601 104224709 -72749431 + MER5A DNA MER1_type 21 126 -63 268 254 17 0 chrX 104224703 104224762 -72749378 - MER5B DNA MER1_type -61 117 58 * 220 255 0 39 chrX 104225039 104225090 -72749050 + MER5B DNA MER1_type 130 178 0 217 320 13 40 chrX 104225908 104225983 -72748157 + MER5A DNA MER1_type 110 182 -7 1414 220 116 12 chrX 104226085 104226508 -72747632 + MLT1C LTR MaLR 1 467 0 340 262 38 104 chrX 104226552 104226735 -72747405 + MER5A DNA MER1_type 1 171 -18 492 314 6 6 chrX 104226743 104226918 -72747222 - MER5B DNA MER1_type -1 177 3 198 0 0 0 chrX 104227541 104227563 -72746577 + (CA)n Simple_repeat Simple_repeat 2 23 0 296 286 19 29 chrX 104229115 104229220 -72744920 + GA-rich Low_complexity Low_complexity 5 108 0 326 275 0 0 chrX 104229782 104229851 -72744289 - L2 LINE L2 -3 3310 3242 575 271 138 14 chrX 104231333 104231543 -72742597 - MIR SINE MIR -7 255 20 404 313 56 7 chrX 104232308 104232452 -72741688 + MIR SINE MIR 4 154 -108 557 320 85 88 chrX 104233802 104233917 -72740223 - L2 LINE L2 0 3272 3158 870 205 90 20 chrX 104233917 104234117 -72740023 - MER58C DNA MER1_type 0 215 2 557 320 85 88 chrX 104234117 104234389 -72739751 - L2 LINE L2 -114 3158 2886 541 240 8 23 chrX 104234379 104234508 -72739632 - MIR SINE MIR -125 137 11 * 225 0 0 0 chrX 104234795 104234820 -72739320 + (T)n Simple_repeat Simple_repeat 1 25 0 369 274 137 8 chrX 104235218 104235342 -72738798 - MER5A DNA MER1_type 0 189 50 2002 136 17 0 chrX 104235469 104235756 -72738384 + AluSx SINE Alu 1 292 -20 372 290 48 40 chrX 104235999 104236123 -72738017 + HAL1 LINE L1 73 197 -2310 1315 273 109 15 chrX 104236439 104237625 -72736515 + HAL1 LINE L1 775 2153 -354 337 233 94 89 chrX 104237864 104238044 -72736096 + HAL1 LINE L1 2320 2500 -7 280 231 77 77 chrX 104238149 104238240 -72735900 - L2 LINE L2 -12 3260 3170 297 0 0 0 chrX 104239562 104239595 -72734545 + (TG)n Simple_repeat Simple_repeat 2 34 0 453 245 105 12 chrX 104239914 104240107 -72734033 - L1ME3A LINE L1 -222 5948 5739 344 244 143 56 chrX 104240199 104240465 -72733675 - L1ME4a LINE L1 -96 6025 5737 239 252 88 31 chrX 104240695 104240710 -72733430 - L1ME4a LINE L1 0 6121 6108 950 18 0 0 chrX 104240710 104240824 -72733316 + L1PA4 LINE L1 6042 6155 0 239 252 88 31 chrX 104240824 104240967 -72733173 - L1ME4a LINE L1 -13 6108 5954 2573 7 0 0 chrX 104241568 104241884 -72732256 + AluYa5 SINE Alu 1 316 0 335 253 66 82 chrX 104241943 104242163 -72731977 - L1MC4a LINE L1 -1893 5915 5700 539 252 9 0 chrX 104242163 104242274 -72731866 - MER81 DNA DNA -2 112 1 335 253 66 82 chrX 104242274 104242358 -72731782 - L1MC4a LINE L1 -2108 5700 5616 1827 175 3 16 chrX 104243026 104243341 -72730799 + AluJo SINE Alu 1 311 -1 1910 132 84 0 chrX 104243893 104244226 -72729914 + MER46B DNA MER2_type 1 236 0 442 337 71 10 chrX 104244259 104244318 -72729822 + MIR SINE MIR 22 76 -186 613 232 0 0 chrX 104244318 104244592 -72729548 - FLAM_C SINE Alu 0 276 3 442 337 71 10 chrX 104244592 104244727 -72729413 + MIR SINE MIR 76 229 -33 712 267 109 0 chrX 104244752 104244973 -72729167 + MIR SINE MIR 18 262 0 251 287 66 88 chrX 104245499 104245635 -72728505 - MIR SINE MIR -82 180 48 2178 132 0 3 chrX 104246415 104246725 -72727415 - AluSx SINE Alu -3 309 1 313 311 60 60 chrX 104247066 104247233 -72726907 - L2 LINE L2 -189 3083 2917 245 292 0 15 chrX 104248302 104248367 -72725773 + MLT1J LTR MaLR 1 64 -447 406 266 79 68 chrX 104248517 104248792 -72725348 + MLT1J LTR MaLR 224 615 0 443 160 154 41 chrX 104249035 104249204 -72724936 + MER53 DNA DNA 2 189 0 214 207 0 35 chrX 104249244 104249302 -72724838 + CT-rich Low_complexity Low_complexity 3 58 0 338 342 18 9 chrX 104250336 104250450 -72723690 + MIR3 SINE MIR 93 207 -1 371 245 43 58 chrX 104250470 104250609 -72723531 - MIR SINE MIR -47 215 79 571 304 46 0 chrX 104250718 104250955 -72723185 + L1M4 LINE L1 4885 5132 -1014 28 0 0 0 chrX 104251357 104251385 -72722755 + AT_rich Low_complexity Low_complexity 1 28 0 2096 109 7 23 chrX 104252842 104253145 -72720995 - AluSg SINE Alu 0 310 13 23 0 0 0 chrX 104253145 104253168 -72720972 + AT_rich Low_complexity Low_complexity 1 23 0 675 207 55 0 chrX 104253389 104253534 -72720606 - MER58B DNA MER1_type 0 341 189 259 360 0 0 chrX 104253669 104253755 -72720385 + L2 LINE L2 3186 3271 -1 223 240 0 0 chrX 104253928 104253978 -72720162 + L2 LINE L2 3256 3305 -8 777 180 11 6 chrX 104254098 104254276 -72719864 + GA-rich Low_complexity Low_complexity 1 179 0 227 254 17 0 chrX 104255375 104255434 -72718706 + GA-rich Low_complexity Low_complexity 2 61 0 259 277 0 116 chrX 104255786 104255872 -72718268 - L2 LINE L2 -646 2668 2606 1983 171 63 5 chrX 104255872 104256286 -72717854 + L1MB7 LINE L1 5747 6184 0 259 277 0 116 chrX 104256286 104256354 -72717786 - L2 LINE L2 -708 2606 2532 209 217 33 17 chrX 104256443 104256503 -72717637 + MIR SINE MIR 202 262 0 560 270 36 7 chrX 104256625 104256762 -72717378 + MIR3 SINE MIR 19 159 -49 6418 169 10 5 chrX 104256783 104258076 -72716064 + L1 LINE L1 4090 5389 -757 456 229 125 21 chrX 104258362 104258506 -72715634 + MIR SINE MIR 31 189 -73 365 356 22 50 chrX 104258526 104258706 -72715434 - MER5B DNA MER1_type 0 178 4 21 0 0 0 chrX 104260151 104260172 -72713968 + AT_rich Low_complexity Low_complexity 1 21 0 914 286 28 20 chrX 104261351 104261606 -72712534 - MIR SINE MIR 0 262 6 307 261 11 23 chrX 104261851 104261939 -72712201 - MIR SINE MIR -86 176 90 3152 202 7 17 chrX 104261940 104262691 -72711449 + L1ME4a LINE L1 4513 5255 -891 1656 183 16 22 chrX 104262691 104263062 -72711078 + L1MA6 LINE L1 5926 6294 -6 210 196 0 43 chrX 104263570 104263616 -72710524 - L2 LINE L2 -221 3051 3008 4058 134 23 1 chrX 104263669 104264317 -72709823 + Tigger1 DNA MER2_type 2 663 -1755 1416 129 92 83 chrX 104264317 104264571 -72709569 + THE1B LTR MaLR 1 265 -163 3740 61 6 8 chrX 104264571 104265065 -72709075 - L1PA8 LINE L1 -3 6169 5677 1416 129 92 83 chrX 104265065 104265231 -72708909 + THE1B LTR MaLR 265 428 0 10198 122 55 9 chrX 104265231 104266466 -72707674 + Tigger1 DNA MER2_type 653 1987 -431 1281 143 5 5 chrX 104266466 104266689 -72707451 - L1MA4A LINE L1 -5 6298 6076 10198 122 55 9 chrX 104266689 104267142 -72706998 + Tigger1 DNA MER2_type 1987 2418 0 191 298 40 28 chrX 104267151 104267309 -72706831 - L2 LINE L2 -365 2907 2752 311 314 147 13 chrX 104267310 104267466 -72706674 + MIR SINE MIR 20 196 -66 302 225 56 14 chrX 104269577 104269648 -72704492 + L1ME4a LINE L1 5649 5722 -399 2941 126 12 0 chrX 104269648 104270069 -72704071 + MSTB LTR MaLR 1 426 0 8005 187 35 21 chrX 104270069 104271683 -72702457 + MSTB-int LTR MaLR 1 1637 -14 2724 147 17 7 chrX 104271688 104272110 -72702030 + MSTB LTR MaLR 1 426 0 332 281 84 6 chrX 104272119 104272297 -72701843 + L1ME4a LINE L1 5727 5918 -203 387 0 0 0 chrX 104272310 104272353 -72701787 + (CA)n Simple_repeat Simple_repeat 2 44 0 2508 107 3 32 chrX 104272595 104272970 -72701170 - THE1B LTR MaLR 0 364 1 251 321 142 0 chrX 104273062 104273280 -72700860 + L3b LINE CR1 1178 1426 -157 1642 189 26 10 chrX 104273430 104273736 -72700404 - AluJo SINE Alu -1 311 1 2160 113 3 0 chrX 104273782 104274073 -72700067 + AluSp SINE Alu 21 312 -1 352 261 233 0 chrX 104275019 104275183 -72698957 - MIR SINE MIR -7 255 52 231 336 10 19 chrX 104275452 104275556 -72698584 + L2 LINE L2 2685 2787 -527 203 386 68 58 chrX 104276153 104276360 -72697780 + L2 LINE L2 3034 3242 -30 201 277 62 15 chrX 104276366 104276431 -72697709 + MER5A DNA MER1_type 7 74 -115 * 202 364 0 85 chrX 104276393 104276522 -72697618 - MER5A DNA MER1_type -25 164 47 886 137 0 0 chrX 104277149 104277273 -72696867 + AluJ SINE Alu 1 124 -178 196 28 83 0 chrX 104277276 104277312 -72696828 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 6188 30 0 0 chrX 104277312 104278066 -72696074 - L1PA4 LINE L1 -16 6139 5386 398 46 0 3 chrX 104278067 104278131 -72696009 + L1P LINE L1 5328 5390 -765 1002 184 11 0 chrX 104278133 104278307 -72695833 + AluJ SINE Alu 131 306 -6 4611 141 11 42 chrX 104278325 104278590 -72695550 - L1MB3 LINE L1 0 6183 5912 2259 103 3 10 chrX 104278590 104278890 -72695250 + AluSq SINE Alu 1 298 -15 4611 141 11 42 chrX 104278890 104279152 -72694988 - L1MB3 LINE L1 -271 5912 5644 2347 73 3 17 chrX 104279152 104279454 -72694686 - AluY SINE Alu -13 298 1 4611 141 11 42 chrX 104279454 104279816 -72694324 - L1MB3 LINE L1 -539 5644 5320 990 159 6 12 chrX 104279864 104280027 -72694113 - AluJo SINE Alu -30 282 121 405 299 6 43 chrX 104280053 104280143 -72693997 + MLT1L LTR MaLR 458 541 -74 2309 187 86 4 chrX 104280143 104280609 -72693531 + MLT1D LTR MaLR 1 504 -1 405 299 6 43 chrX 104280609 104280682 -72693458 + MLT1L LTR MaLR 541 615 0 182 156 0 0 chrX 104280849 104280881 -72693259 + L2 LINE L2 3241 3272 0 471 264 115 29 chrX 104281916 104282090 -72692050 + MIR SINE MIR 23 211 -51 2805 116 21 2 chrX 104282969 104283400 -72690740 - Tigger2 DNA MER2_type 0 2718 2280 352 167 61 0 chrX 104283397 104283463 -72690677 + MER8 DNA MER2_type 170 239 0 * 1003 302 77 9 chrX 104283533 104283990 -72690150 - MLT1J LTR MaLR -11 500 13 310 231 163 48 chrX 104285114 104285261 -72688879 + MIR SINE MIR 90 253 -9 263 299 160 69 chrX 104285697 104286129 -72688011 + L2 LINE L2 1465 1935 -1379 558 181 28 125 chrX 104286189 104286333 -72687807 - MIR SINE MIR -98 164 35 476 227 136 45 chrX 104286322 104286476 -72687664 + L2 LINE L2 2041 2208 -1106 * 6102 85 21 0 chrX 104286482 104287763 -72686377 - L1PA13 LINE L1 0 6163 4873 661 230 57 69 chrX 104287798 104288171 -72685969 + MLT1H LTR MaLR 20 410 -185 309 253 11 0 chrX 104288202 104288289 -72685851 + MLT1H LTR MaLR 466 553 -2 1245 275 133 50 chrX 104288291 104288423 -72685717 + L2 LINE L2 2208 2328 -985 571 77 0 67 chrX 104288423 104288527 -72685613 - L1MB8 LINE L1 0 6178 6082 1245 275 133 50 chrX 104288527 104289307 -72684833 + L2 LINE L2 2328 3190 -123 323 269 174 27 chrX 104289694 104289843 -72684297 - MIR3 SINE MIR -15 193 23 357 361 74 23 chrX 104289887 104290186 -72683954 + L2 LINE L2 2336 2649 -665 187 419 32 32 chrX 104290198 104290353 -72683787 - L2 LINE L2 0 3272 3118 1766 175 55 20 chrX 104290389 104290841 -72683299 - MER110A LTR ERV1 0 468 1 3062 138 23 14 chrX 104290979 104291623 -72682517 - L1M4 LINE L1 -378 5806 5159 1966 181 14 0 chrX 104291633 104291993 -72682147 - L1MB5 LINE L1 -8 6166 5802 5542 216 25 13 chrX 104291997 104293340 -72680800 - L1MB5 LINE L1 -1419 4727 3370 992 170 3 99 chrX 104293350 104293633 -72680507 - L1M4 LINE L1 -989 5157 4902 2271 109 3 3 chrX 104293948 104294260 -72679880 - AluSx SINE Alu 0 312 1 646 323 24 20 chrX 104294970 104295224 -72678916 + MIR SINE MIR 2 256 -6 357 324 85 46 chrX 104295292 104295598 -72678542 + L1ME4a LINE L1 5616 5933 -188 23 0 0 0 chrX 104295729 104295752 -72678388 + AT_rich Low_complexity Low_complexity 1 23 0 2276 112 0 0 chrX 104295762 104296058 -72678082 - AluSx SINE Alu -16 296 1 1005 165 53 194 chrX 104296088 104296525 -72677615 + L1ME3A LINE L1 5796 6170 0 297 130 80 0 chrX 104296529 104296629 -72677511 + (TAGA)n Simple_repeat Simple_repeat 3 110 0 1233 119 64 23 chrX 104296807 104297026 -72677114 + L1PA16 LINE L1 5938 6165 -1 404 306 48 14 chrX 104297040 104297187 -72676953 - MIR3 SINE MIR -19 189 38 393 195 82 31 chrX 104298232 104298349 -72675791 - MIR3 SINE MIR -51 157 30 195 277 62 15 chrX 104299000 104299065 -72675075 + MER5A DNA MER1_type 122 189 0 449 333 21 16 chrX 104299069 104299255 -72674885 + MIR3 SINE MIR 16 202 -6 631 54 8 161 chrX 104299818 104299948 -72674192 - L1MA1 LINE L1 0 6302 6193 261 193 53 0 chrX 104299949 104300006 -72674134 - MLT1F1 LTR MaLR -504 63 4 203 193 18 53 chrX 104300220 104300277 -72673863 + CT-rich Low_complexity Low_complexity 1 55 0 888 269 45 0 chrX 104300665 104300888 -72673252 - MIR SINE MIR -5 257 25 474 287 59 35 chrX 104301062 104301316 -72672824 - MIR SINE MIR -1 261 2 2209 115 0 7 chrX 104301845 104302149 -72671991 - AluSx SINE Alu -8 304 3 1867 233 62 63 chrX 104302829 104303556 -72670584 + L1M4 LINE L1 3022 3749 -2397 1664 180 26 10 chrX 104303556 104303861 -72670279 + AluJb SINE Alu 1 310 -2 1867 233 62 63 chrX 104303861 104303924 -72670216 + L1M4 LINE L1 3749 3811 -2335 1689 201 48 48 chrX 104303935 104304128 -72670012 + L1M4c LINE L1 1816 2008 -4376 453 36 0 0 chrX 104304128 104304183 -72669957 + (TG)n Simple_repeat Simple_repeat 2 56 0 1486 173 25 0 chrX 104304183 104304426 -72669714 - AluJo SINE Alu -27 285 37 1689 201 48 48 chrX 104304426 104304816 -72669324 + L1M4c LINE L1 2006 2494 -3890 468 0 0 0 chrX 104305213 104305265 -72668875 + (T)n Simple_repeat Simple_repeat 1 52 0 279 238 36 0 chrX 104305596 104305680 -72668460 - L1MC4 LINE L1 -1 8041 7955 * 437 117 117 0 chrX 104305678 104305755 -72668385 - L1MC/D LINE L1 -2192 5803 5718 299 175 0 16 chrX 104305823 104305886 -72668254 - L1MC/D LINE L1 -2259 5736 5675 26 0 0 0 chrX 104306970 104306996 -72667144 + AT_rich Low_complexity Low_complexity 1 26 0 1320 259 105 57 chrX 104308229 104308707 -72665433 + MLT1G1 LTR MaLR 1 501 -94 1633 193 22 14 chrX 104308707 104308755 -72665385 - L1MC/D LINE L1 -674 5685 5639 2171 150 104 24 chrX 104308755 104308834 -72665306 - LTR54B LTR ERV1 0 498 427 2011 155 0 0 chrX 104308834 104309131 -72665009 - AluSx SINE Alu -15 297 1 2171 150 104 24 chrX 104309131 104309512 -72664628 - LTR54B LTR ERV1 -71 427 1 1633 193 22 14 chrX 104309512 104309826 -72664314 - L1MC/D LINE L1 -720 5639 5320 229 44 0 67 chrX 104309826 104309871 -72664269 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3808 38 0 0 chrX 104309871 104310323 -72663817 + L1PA3 LINE L1 5704 6155 0 2372 187 37 29 chrX 104310467 104311012 -72663128 - L1ME2 LINE L1 -52 6112 5564 437 193 77 5 chrX 104311706 104311724 -72662416 - L1ME2 LINE L1 -202 5966 5951 2778 77 3 13 chrX 104311724 104312101 -72662039 - THE1C LTR MaLR 0 375 3 437 193 77 5 chrX 104312101 104312208 -72661932 - L1ME2 LINE L1 -217 5951 5827 250 111 0 0 chrX 104312210 104312246 -72661894 + MSTA LTR MaLR 1 36 -392 4819 157 48 4 chrX 104312529 104313613 -72660527 - L1MB7 LINE L1 0 6184 5054 478 214 36 0 chrX 104313754 104313866 -72660274 - MIR SINE MIR -42 220 105 263 274 126 11 chrX 104313871 104313966 -72660174 + MLT1L LTR MaLR 349 454 -161 787 293 112 24 chrX 104314134 104314668 -72659472 + MLT1L LTR MaLR 1 611 -4 261 330 0 23 chrX 104314675 104314763 -72659377 - MIR SINE MIR -176 86 1 311 91 0 0 chrX 104314878 104314922 -72659218 - MER72 LTR ERV1 0 722 679 364 237 121 62 chrX 104314938 104315306 -72658834 + LTR48 LTR ERV1 261 778 -9 856 232 104 83 chrX 104315314 104315541 -72658599 + MLT1G LTR MaLR 248 486 -104 2402 84 0 3 chrX 104315541 104315849 -72658291 - AluSg SINE Alu 0 310 4 856 232 104 83 chrX 104315849 104315957 -72658183 + MLT1G LTR MaLR 486 590 0 480 297 14 0 chrX 104316058 104316196 -72657944 - MIR SINE MIR -51 211 72 182 200 22 22 chrX 104316352 104316397 -72657743 + L2 LINE L2 2605 2649 -665 317 224 59 12 chrX 104316580 104316665 -72657475 + L2 LINE L2 3179 3267 -5 902 309 15 58 chrX 104317111 104317658 -72656482 - HAL1 LINE L1 -785 1722 1200 821 284 62 24 chrX 104318516 104318805 -72655335 - MLT1J LTR MaLR -26 485 186 487 234 133 6 chrX 104318920 104319078 -72655062 + MER5B DNA MER1_type 1 178 0 4581 211 34 66 chrX 104319292 104320839 -72653301 + L1MD2 LINE L1 3833 5330 -816 570 69 0 0 chrX 104320844 104320916 -72653224 + U6 snRNA snRNA 2 73 -34 3650 184 19 76 chrX 104320949 104321847 -72652293 + L1MD2 LINE L1 5385 6231 -11 1493 230 37 57 chrX 104321945 104322458 -72651682 - L1ME1 LINE L1 -18 6148 5646 * 4950 176 18 15 chrX 104322432 104323679 -72650461 - L1MB7 LINE L1 0 6184 4936 218 157 20 20 chrX 104323698 104323749 -72650391 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 300 301 102 34 chrX 104323977 104324153 -72649987 - ERVL LTR ERVL -992 4772 4585 394 245 19 0 chrX 104374771 104374877 -72599263 - L1ME4a LINE L1 -240 5881 5774 407 235 98 0 chrX 104374910 104375042 -72599098 + L1ME4a LINE L1 5963 6107 -14 2117 118 30 3 chrX 104376144 104376441 -72597699 - AluSc SINE Alu -4 305 1 265 314 83 127 chrX 104376629 104376884 -72597256 + L2 LINE L2 2811 3037 -235 372 221 106 48 chrX 104376884 104376988 -72597152 - MER81 DNA DNA -3 111 2 265 314 83 127 chrX 104376988 104377204 -72596936 + L2 LINE L2 3037 3261 -11 507 210 60 98 chrX 104378498 104378664 -72595476 - MIR SINE MIR -77 131 2 216 0 0 0 chrX 104378886 104378910 -72595230 + (CA)n Simple_repeat Simple_repeat 2 25 0 980 129 123 23 chrX 104378910 104379081 -72595059 + MER2 DNA MER2_type 3 190 -155 4948 114 51 43 chrX 104379081 104379751 -72594389 - Tigger3(Golem) DNA MER2_type 0 3029 2348 1938 121 7 0 chrX 104379751 104380052 -72594088 + AluSq SINE Alu 1 303 0 4948 114 51 43 chrX 104380052 104380262 -72593878 - Tigger3(Golem) DNA MER2_type -681 2348 2141 1088 163 52 0 chrX 104380260 104380432 -72593708 - Tigger3(Golem) DNA MER2_type -2848 181 1 * 627 209 61 0 chrX 104380432 104380580 -72593560 + MER2 DNA MER2_type 189 345 0 230 146 42 0 chrX 104380580 104380628 -72593512 + (TATATG)n Simple_repeat Simple_repeat 1 50 0 246 242 0 22 chrX 104380628 104380719 -72593421 + L1MC4 LINE L1 6615 6703 -1339 234 0 0 0 chrX 104380720 104380745 -72593395 + (CA)n Simple_repeat Simple_repeat 1 51 0 234 0 0 0 chrX 104380745 104380771 -72593369 + (CA)n Simple_repeat Simple_repeat 2 27 0 373 254 24 8 chrX 104381750 104381876 -72592264 + L2 LINE L2 1715 1842 -1472 212 327 36 27 chrX 104382682 104382792 -72591348 - MIR3 SINE MIR -48 160 50 198 0 0 0 chrX 104382881 104382903 -72591237 + (A)n Simple_repeat Simple_repeat 1 22 0 306 194 0 0 chrX 104382948 104383020 -72591120 + A-rich Low_complexity Low_complexity 1 72 0 583 318 125 14 chrX 104384443 104384811 -72589329 + L3 LINE CR1 296 704 -873 354 225 38 0 chrX 104384759 104384839 -72589301 + MER5B DNA MER1_type 96 178 0 * 194 103 0 26 chrX 104385978 104386017 -72588123 + (TA)n Simple_repeat Simple_repeat 2 39 0 727 274 52 22 chrX 104386023 104386253 -72587887 - MIR SINE MIR -25 237 1 5547 173 14 4 chrX 104388486 104389850 -72584290 + L1P4 LINE L1 4119 5497 -668 1842 147 10 33 chrX 104389850 104390156 -72583984 + AluSx SINE Alu 1 299 -13 5547 173 14 4 chrX 104390156 104390331 -72583809 + L1P4 LINE L1 5497 5669 -496 479 122 0 0 chrX 104390309 104390383 -72583757 + L1P4 LINE L1 5597 5670 -504 * 3394 156 6 2 chrX 104390387 104390926 -72583214 + L1PA15 LINE L1 5613 6164 -1 243 170 0 0 chrX 104390972 104391019 -72583121 + A-rich Low_complexity Low_complexity 1 47 0 309 266 0 53 chrX 104392365 104392459 -72581681 - MER5A DNA MER1_type -84 105 17 318 311 123 8 chrX 104393914 104394036 -72580104 - MER5A DNA MER1_type 0 189 54 261 118 0 0 chrX 104394048 104394099 -72580041 + (T)n Simple_repeat Simple_repeat 1 51 0 2282 90 13 3 chrX 104394195 104394496 -72579644 + AluSx SINE Alu 1 304 -8 323 95 48 48 chrX 104395867 104395930 -72578210 - L1MB1 LINE L1 -3 6165 6103 1773 147 62 0 chrX 104396446 104396718 -72577422 + AluJb SINE Alu 1 289 -23 362 339 18 0 chrX 104397229 104397338 -72576802 + MIR SINE MIR 31 141 -67 707 261 50 0 chrX 104397348 104397528 -72576612 - MIR SINE MIR 0 262 74 222 209 0 0 chrX 104397805 104397848 -72576292 + L2 LINE L2 3271 3313 0 5496 110 2 2 chrX 104398123 104398931 -72575209 + L1PA16 LINE L1 5359 6166 0 233 176 286 44 chrX 104399005 104399096 -72575044 + MIR SINE MIR 131 243 -19 189 0 0 0 chrX 104399873 104399894 -72574246 + (TA)n Simple_repeat Simple_repeat 2 22 0 201 338 81 0 chrX 104400322 104400396 -72573744 + MIR SINE MIR 44 123 -139 6968 83 12 0 chrX 104401035 104401998 -72572142 - L1PA7 LINE L1 -1480 4666 3692 7049 52 11 2 chrX 104401998 104403442 -72570698 + L1PA7 LINE L1 4673 6154 0 457 305 122 0 chrX 104403717 104403881 -72570259 - MIR3 SINE MIR -9 199 16 197 365 28 0 chrX 104404198 104404305 -72569835 - L2 LINE L2 -583 2731 2622 532 271 140 19 chrX 104404539 104404753 -72569387 - MIR SINE MIR -12 250 11 183 100 0 0 chrX 104405135 104405165 -72568975 + (TA)n Simple_repeat Simple_repeat 1 30 0 885 270 121 20 chrX 104406784 104407188 -72566952 + L1MC4 LINE L1 5485 5929 -1879 229 236 55 0 chrX 104407563 104407618 -72566522 + L1MC4 LINE L1 6958 7015 -1027 1610 123 5 0 chrX 104407787 104408007 -72566133 + AluSx SINE Alu 1 221 -91 420 244 82 35 chrX 104408007 104408322 -72565818 + L1MC5 LINE L1 7370 7699 -262 372 123 0 0 chrX 104408812 104408885 -72565255 + (TA)n Simple_repeat Simple_repeat 2 74 0 554 272 62 6 chrX 104409245 104409407 -72564733 - MIR SINE MIR 0 262 92 191 188 0 0 chrX 104409813 104409845 -72564295 + L2 LINE L2 3231 3262 -10 1799 109 8 0 chrX 104411329 104411595 -72562545 - L1PA8 LINE L1 0 6172 5905 226 230 46 81 chrX 104411734 104411821 -72562319 - L2 LINE L2 -21 3292 3209 1344 138 84 27 chrX 104412329 104412627 -72561513 - MER33 DNA MER1_type -5 319 5 420 299 43 0 chrX 104413021 104413138 -72561002 + L2 LINE L2 3192 3313 0 748 172 0 0 chrX 104413148 104413270 -72560870 - MER3 DNA MER1_type -77 132 11 436 297 23 14 chrX 104414097 104414253 -72559887 + MER5A DNA MER1_type 1 168 -21 189 0 0 0 chrX 104414869 104414890 -72559250 + (GA)n Simple_repeat Simple_repeat 2 22 0 685 272 12 16 chrX 104415171 104415189 -72558951 + L1PA16 LINE L1 5353 5370 -796 1716 159 23 3 chrX 104415189 104415491 -72558649 + L1PA16 LINE L1 5849 6156 -10 685 272 12 16 chrX 104415491 104415711 -72558429 + L1PA16 LINE L1 5370 5592 -574 259 246 0 18 chrX 104415782 104415839 -72558301 - L2 LINE L2 -13 3300 3245 909 228 24 51 chrX 104415948 104416202 -72557938 - L1MB7 LINE L1 -10 6174 5928 519 236 39 60 chrX 104416239 104416472 -72557668 + MARNA DNA Mariner 287 514 -72 371 219 167 0 chrX 104417187 104417283 -72556857 + L2 LINE L2 3202 3313 0 649 314 93 39 chrX 104417560 104418022 -72556118 + L2 LINE L2 2397 2883 -431 424 305 38 0 chrX 104418153 104418284 -72555856 + L2 LINE L2 2924 3059 -213 204 135 0 0 chrX 104418328 104418365 -72555775 + (TC)n Simple_repeat Simple_repeat 2 38 0 223 345 109 27 chrX 104418630 104418740 -72555400 + L2 LINE L2 3146 3264 -8 2118 60 0 0 chrX 104419960 104420227 -72553913 - L1PA7 LINE L1 -2 6152 5886 684 256 36 6 chrX 104420770 104420938 -72553202 - MIR SINE MIR -42 220 48 481 289 5 13 chrX 104420998 104421182 -72552958 - MIR SINE MIR 0 262 35 1661 184 14 0 chrX 104421245 104421523 -72552617 + AluJo SINE Alu 1 282 -30 341 253 13 20 chrX 104421533 104421636 -72552504 - MIR SINE MIR -62 146 66 403 318 119 30 chrX 104422295 104422537 -72551603 + MIR SINE MIR 4 262 0 845 204 30 65 chrX 104422690 104422891 -72551249 - MER20 DNA MER1_type -8 211 18 700 299 102 18 chrX 104423152 104423436 -72550704 - L2 LINE L2 0 3272 2965 264 77 0 0 chrX 104424846 104424885 -72549255 + (TTC)n Simple_repeat Simple_repeat 1 39 0 1181 155 11 0 chrX 104425687 104425868 -72548272 + MER5A DNA MER1_type 4 186 -3 1172 194 40 43 chrX 104425885 104425953 -72548187 + MER33 DNA MER1_type 1 68 -2517 7558 26 1 0 chrX 104425953 104427404 -72546736 + L1PA4 LINE L1 4728 6180 0 1172 194 40 43 chrX 104427404 104427658 -72546482 + MER33 DNA MER1_type 68 323 -1 202 50 50 25 chrX 104427666 104427706 -72546434 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 504 177 42 0 chrX 104429318 104429414 -72544726 + MER110 LTR ERV1 1 100 -391 * 1885 231 48 5 chrX 104429412 104429853 -72544287 + MER110 LTR ERV1 17 476 -15 2428 78 13 0 chrX 104430027 104430334 -72543806 - AluSp SINE Alu 0 313 3 497 273 99 0 chrX 104430632 104430753 -72543387 + MER5A DNA MER1_type 56 188 -1 621 323 134 45 chrX 104431445 104432155 -72541985 + L2 LINE L2 2285 3056 -216 216 308 0 31 chrX 104432157 104432222 -72541918 - L2 LINE L2 -7 3265 3203 1973 158 0 0 chrX 104432329 104432626 -72541514 - AluJb SINE Alu -15 297 1 736 294 56 4 chrX 104433278 104433509 -72540631 - MIR SINE MIR 0 262 20 3433 135 29 3 chrX 104433524 104434118 -72540022 - L1MB3 LINE L1 -2 6181 5573 280 259 13 13 chrX 104434446 104434536 -72539604 + MIR SINE MIR 37 127 -81 487 273 0 9 chrX 104434565 104434675 -72539465 + MIR SINE MIR 81 189 -73 1734 251 16 16 chrX 104434780 104435289 -72538851 + L1ME1 LINE L1 5649 6157 -9 3184 163 19 6 chrX 104435740 104436281 -72537859 + MER44D DNA MER2_type 2 604 -1 2716 82 3 0 chrX 104437085 104437438 -72536702 + THE1A LTR MaLR 2 355 0 11739 90 4 1 chrX 104437438 104439013 -72535127 + THE1A-int LTR MaLR 1 1580 0 2459 117 8 0 chrX 104439013 104439365 -72534775 + THE1A LTR MaLR 1 355 0 180 0 0 0 chrX 104444842 104444862 -72529278 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chrX 104446304 104446326 -72527814 + AT_rich Low_complexity Low_complexity 1 22 0 486 238 0 83 chrX 104447676 104447857 -72526283 - MER69A DNA AcHobo 0 177 12 485 300 67 17 chrX 104448593 104448773 -72525367 + L2 LINE L2 2430 2618 -696 189 0 0 0 chrX 104448834 104448855 -72525285 + (TG)n Simple_repeat Simple_repeat 2 22 0 878 122 15 0 chrX 104448860 104448991 -72525149 - AluSg/x SINE Alu -11 299 167 375 308 55 96 chrX 104449001 104449527 -72524613 + L2 LINE L2 2734 3229 -43 631 302 116 17 chrX 104449533 104449765 -72524375 - MIR SINE MIR -2 260 6 515 304 50 0 chrX 104450334 104450495 -72523645 - MER5B DNA MER1_type -4 174 6 1129 306 133 68 chrX 104450806 104450907 -72523233 + L2 LINE L2 707 800 -2472 503 280 48 6 chrX 104450907 104451075 -72523065 + MER5B DNA MER1_type 1 175 -3 1129 306 133 68 chrX 104451075 104453334 -72520806 + L2 LINE L2 800 3234 -38 216 204 23 0 chrX 104453340 104453384 -72520756 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 253 279 66 74 chrX 104454942 104455064 -72519076 + L2 LINE L2 3165 3285 -28 303 109 0 36 chrX 104456515 104456570 -72517570 + MLT2A2 LTR ERVL 401 453 0 24 0 0 0 chrX 104456598 104456622 -72517518 + AT_rich Low_complexity Low_complexity 1 24 0 278 261 62 0 chrX 104458635 104458700 -72515440 + L2 LINE L2 3194 3262 -10 1233 151 23 32 chrX 104459347 104459566 -72514574 + MER20 DNA MER1_type 1 217 -2 290 244 57 16 chrX 104459591 104459714 -72514426 + L1ME4a LINE L1 5931 6058 -63 32 0 0 43 chrX 104459744 104459761 -72514379 + AT_rich Low_complexity Low_complexity 1 17 -28 1967 77 60 17 chrX 104459761 104460060 -72514080 + L1MA1 LINE L1 5983 6294 -8 32 0 0 43 chrX 104460060 104460089 -72514051 + AT_rich Low_complexity Low_complexity 17 45 0 39 22 0 0 chrX 104460099 104460145 -72513995 + AT_rich Low_complexity Low_complexity 1 46 0 1554 163 18 25 chrX 104460195 104460315 -72513825 + AluJb SINE Alu 2 121 -194 240 59 0 0 chrX 104460315 104460349 -72513791 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1554 163 18 25 chrX 104460349 104460544 -72513596 + AluJb SINE Alu 121 315 0 389 303 133 29 chrX 104460723 104461135 -72513005 - L1ME LINE L1 -392 5772 5318 411 209 27 135 chrX 104462424 104462572 -72511568 + L2 LINE L2 3181 3312 -1 291 311 118 37 chrX 104463956 104464091 -72510049 - L3 LINE CR1 -2 1575 1430 808 196 57 34 chrX 104464290 104464499 -72509641 + MER20 DNA MER1_type 1 214 -5 4241 81 17 0 chrX 104464667 104465261 -72508879 - L1MA2 LINE L1 0 6304 5701 929 284 126 23 chrX 104465266 104466650 -72507490 - L1MC/D LINE L1 -303 5818 4302 1155 304 62 16 chrX 104466817 104467205 -72506935 - L3 LINE CR1 -195 1382 977 2196 114 0 3 chrX 104467286 104467593 -72506547 + AluSx SINE Alu 1 306 -6 1839 167 3 13 chrX 104467606 104467912 -72506228 - AluJb SINE Alu -3 309 7 352 309 130 13 chrX 104468038 104468223 -72505917 - MIR3 SINE MIR 0 208 1 453 185 0 83 chrX 104468477 104468585 -72505555 - AluJo SINE Alu -178 134 36 238 325 24 0 chrX 104468784 104468867 -72505273 + L2 LINE L2 2976 3060 -212 328 246 61 0 chrX 104469013 104469127 -72505013 + MER117 DNA MER1_type 44 164 -33 244 408 39 21 chrX 104469191 104469424 -72504716 - L3 LINE CR1 -1218 359 123 184 238 16 63 chrX 104470072 104470135 -72504005 - L2 LINE L2 -12 3301 3242 202 422 31 23 chrX 104471590 104471718 -72502422 + L2 LINE L2 3144 3272 0 23 0 0 0 chrX 104471791 104471814 -72502326 + AT_rich Low_complexity Low_complexity 1 23 0 340 296 47 47 chrX 104472027 104472196 -72501944 - MIR SINE MIR -46 216 48 351 60 0 0 chrX 104472538 104472588 -72501552 + (TC)n Simple_repeat Simple_repeat 2 51 0 1252 154 4 68 chrX 104473153 104473387 -72500753 - MER20 DNA MER1_type 0 219 1 1699 153 0 4 chrX 104473389 104473657 -72500483 + AluJo SINE Alu 1 267 -45 2323 113 16 40 chrX 104474288 104474661 -72499479 + THE1B LTR MaLR 1 364 0 235 357 48 24 chrX 104474822 104474948 -72499192 + MIR SINE MIR 16 144 -64 1188 268 87 34 chrX 104475150 104475621 -72498519 + LTR33 LTR ERVL 23 518 -3 284 170 0 0 chrX 104476186 104476233 -72497907 - MIR3 SINE MIR -11 197 151 291 54 0 0 chrX 104476511 104476548 -72497592 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 436 313 25 16 chrX 104477254 104477406 -72496734 + MIR3 SINE MIR 47 162 -46 265 288 15 0 chrX 104478338 104478404 -72495736 - L2 LINE L2 -62 3251 3185 406 141 12 0 chrX 104478564 104478649 -72495491 - L1MB8 LINE L1 0 6178 6093 1586 181 30 53 chrX 104478661 104479098 -72495042 - L1MB4 LINE L1 -1 6179 5753 188 111 0 0 chrX 104479098 104479125 -72495015 + MIR3 SINE MIR 171 197 -11 3016 70 21 0 chrX 104479142 104479703 -72494437 + L1PA8A LINE L1 5119 5687 -444 * 24369 145 9 21 chrX 104479701 104481419 -72492721 - L1PA8A LINE L1 -670 5776 4038 2223 112 0 0 chrX 104481419 104481714 -72492426 - AluSx SINE Alu -17 295 1 24369 145 9 21 chrX 104481714 104483031 -72491109 - L1PA8A LINE L1 -2408 4038 2706 387 0 0 0 chrX 104483031 104483074 -72491066 + (TA)n Simple_repeat Simple_repeat 1 43 0 24369 145 9 21 chrX 104483074 104485292 -72488848 - L1PA8A LINE L1 -3740 2706 529 2011 279 148 36 chrX 104485298 104485787 -72488353 - L2 LINE L2 -534 2780 2347 2656 120 70 2 chrX 104485787 104486188 -72487952 - MSTC LTR MaLR 0 428 1 2011 279 148 36 chrX 104486188 104486558 -72487582 - L2 LINE L2 -967 2347 1825 203 284 236 27 chrX 104487313 104487461 -72486679 + L2 LINE L2 2921 3099 -173 323 200 0 12 chrX 104488426 104488506 -72485634 + CT-rich Low_complexity Low_complexity 6 84 0 379 306 37 0 chrX 104488737 104488845 -72485295 + MIR SINE MIR 37 148 -60 1940 102 3 44 chrX 104489429 104489748 -72484392 - AluSc SINE Alu 0 309 1 284 253 53 13 chrX 104490614 104490689 -72483451 + L2 LINE L2 3139 3216 -56 601 308 67 17 chrX 104490709 104490949 -72483191 + MIR SINE MIR 4 255 -7 341 331 63 16 chrX 104493458 104493585 -72480555 + MIR3 SINE MIR 13 145 -63 208 317 0 33 chrX 104495107 104495167 -72478973 + MER5C DNA MER1_type 5 62 -262 593 337 90 35 chrX 104495717 104496061 -72478079 + L2 LINE L2 2910 3272 0 1034 226 6 32 chrX 104496398 104496858 -72477282 - MLT1F LTR MaLR 0 542 1 236 322 46 0 chrX 104497725 104497812 -72476328 + MIR SINE MIR 42 132 -130 618 172 76 13 chrX 104497825 104497982 -72476158 - LTR37A LTR ERV1 -259 167 1 1015 169 142 48 chrX 104499497 104499792 -72474348 - MER33 DNA MER1_type 0 324 2 259 304 33 76 chrX 104499848 104500032 -72474108 - MIR SINE MIR -28 234 59 1336 197 11 9 chrX 104500703 104500966 -72473174 - MIR SINE MIR -1 261 2 198 0 0 0 chrX 104501788 104501810 -72472330 + (A)n Simple_repeat Simple_repeat 1 22 0 749 257 54 18 chrX 104502002 104502224 -72471916 - MIR SINE MIR -13 249 20 249 305 30 69 chrX 104503149 104503280 -72470860 + MIR SINE MIR 91 216 -46 23 0 0 0 chrX 104504423 104504446 -72469694 + AT_rich Low_complexity Low_complexity 1 23 0 246 62 0 0 chrX 104504540 104504572 -72469568 + (TG)n Simple_repeat Simple_repeat 1 32 0 237 65 0 0 chrX 104504572 104504603 -72469537 + (GA)n Simple_repeat Simple_repeat 2 32 0 197 286 0 0 chrX 104504604 104504653 -72469487 + MIR SINE MIR 213 261 -1 644 299 59 67 chrX 104506058 104506446 -72467694 + L2 LINE L2 2565 2949 -365 7312 160 17 18 chrX 104506451 104507006 -72467134 - L1PA15 LINE L1 -6 6159 5605 393 22 0 0 chrX 104507006 104507052 -72467088 + (TTA)n Simple_repeat Simple_repeat 3 48 0 7312 160 17 18 chrX 104507052 104507200 -72466940 - L1PA15 LINE L1 -560 5605 5458 2520 81 0 0 chrX 104507200 104507509 -72466631 - AluSg SINE Alu -1 309 1 7312 160 17 18 chrX 104507509 104508884 -72465256 - L1PA15 LINE L1 -707 5458 4109 2344 105 0 0 chrX 104508884 104509188 -72464952 + AluSc SINE Alu 1 304 -5 7312 160 17 18 chrX 104509188 104509307 -72464833 - L1PA15 LINE L1 -2056 4109 3991 7727 3 0 0 chrX 104509321 104510223 -72463917 - L1HS LINE L1 0 6155 5254 2292 37 0 0 chrX 104510238 104510534 -72463606 + L1HS LINE L1 4940 5235 -911 295 236 0 0 chrX 104510530 104510602 -72463538 - L1 LINE L1 -2141 4241 4170 * 1034 190 34 8 chrX 104510695 104510932 -72463208 - L1MB7 LINE L1 -17 6167 5925 181 332 174 34 chrX 104510932 104511167 -72462973 + L2 LINE L2 3005 3272 0 225 234 0 0 chrX 104511479 104511543 -72462597 + CT-rich Low_complexity Low_complexity 1 64 0 243 292 6 64 chrX 104511908 104512079 -72462061 + CT-rich Low_complexity Low_complexity 4 164 0 283 237 13 26 chrX 104512271 104512347 -72461793 + MIR SINE MIR 89 163 -99 397 198 66 165 chrX 104513610 104513792 -72460348 - MIR3 SINE MIR -2 206 43 1081 205 24 0 chrX 104513794 104513999 -72460141 - MER63A DNA MER1_type 0 210 1 2137 185 37 94 chrX 104514848 104515035 -72459105 - L1MC4 LINE L1 -2 8040 7844 2341 60 0 3 chrX 104515035 104515363 -72458777 - AluY SINE Alu 0 327 1 2137 185 37 94 chrX 104515363 104515851 -72458289 - L1MC4 LINE L1 -198 7844 7403 197 309 12 48 chrX 104516374 104516458 -72457682 - MIR SINE MIR -71 191 111 22 0 0 0 chrX 104516573 104516595 -72457545 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chrX 104516681 104516718 -72457422 + AT_rich Low_complexity Low_complexity 1 37 0 360 273 253 20 chrX 104517783 104517933 -72456207 - MIR3 SINE MIR -11 197 13 351 161 0 32 chrX 104518057 104518150 -72455990 + (TA)n Simple_repeat Simple_repeat 1 90 0 984 161 76 28 chrX 104518238 104518487 -72455653 - L1MB7 LINE L1 -5 6179 5919 * 3190 224 41 17 chrX 104518480 104519686 -72454454 - L1M4c LINE L1 -3137 3507 2268 784 211 20 65 chrX 104519717 104520005 -72454135 + L1MA9 LINE L1 5877 6165 -126 373 245 76 46 chrX 104520114 104520351 -72453789 - L1M4c LINE L1 -4534 2112 1869 2894 234 34 29 chrX 104520355 104521172 -72452968 - L1M4c LINE L1 -5703 839 19 481 191 28 57 chrX 104521455 104521596 -72452544 + MER58C DNA MER1_type 79 215 0 238 283 333 0 chrX 104521697 104521817 -72452323 - MIR3 SINE MIR -9 199 40 1264 90 12 0 chrX 104522154 104522321 -72451819 + AluSg/x SINE Alu 129 297 -15 3982 192 83 30 chrX 104522370 104523591 -72450549 + L1MD2 LINE L1 5078 6334 -10 234 107 71 0 chrX 104525368 104525424 -72448716 + (TG)n Simple_repeat Simple_repeat 1 60 0 231 250 16 31 chrX 104525902 104525966 -72448174 - MIR3 SINE MIR -36 172 110 243 0 0 0 chrX 104526436 104526463 -72447677 + (CA)n Simple_repeat Simple_repeat 2 28 0 663 242 21 67 chrX 104526693 104526903 -72447237 - MIR3 SINE MIR -5 203 2 2063 111 6 48 chrX 104528628 104528943 -72445197 - AluSx SINE Alu -10 302 1 207 0 0 0 chrX 104531655 104531678 -72442462 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 412 239 0 0 chrX 104531691 104531779 -72442361 - MIR3 SINE MIR -1 207 120 2282 85 0 0 chrX 104532228 104532540 -72441600 + AluSx SINE Alu 1 312 0 1308 190 22 0 chrX 104532996 104533270 -72440870 + L1MB2 LINE L1 5889 6168 -3 586 182 64 91 chrX 104534292 104534479 -72439661 + MER5A DNA MER1_type 4 185 -4 23 0 0 0 chrX 104535280 104535303 -72438837 + AT_rich Low_complexity Low_complexity 1 23 0 237 241 19 0 chrX 104535779 104535833 -72438307 - MIR3 SINE MIR -5 203 149 317 311 8 17 chrX 104535861 104535980 -72438160 + MER5A DNA MER1_type 44 161 -28 523 212 158 11 chrX 104535997 104536156 -72437984 - MER5A DNA MER1_type 0 189 4 293 309 103 22 chrX 104536164 104536300 -72437840 - MIR3 SINE MIR -52 156 10 180 0 0 0 chrX 104536439 104536459 -72437681 + (A)n Simple_repeat Simple_repeat 1 20 0 272 261 15 131 chrX 104536822 104537082 -72437058 - L2 LINE L2 -219 3053 2824 834 295 97 43 chrX 104537088 104537684 -72436456 - L2 LINE L2 0 3272 2629 205 252 99 63 chrX 104537824 104537935 -72436205 - MIR SINE MIR -77 185 71 1833 95 4 8 chrX 104538411 104538654 -72435486 + L1PA7 LINE L1 5909 6150 -4 553 189 20 72 chrX 104538669 104538822 -72435318 + L1MA8 LINE L1 6142 6286 -5 1130 183 23 0 chrX 104538843 104539149 -72434991 + L1MB2 LINE L1 5171 5482 -701 1648 78 41 0 chrX 104539149 104539367 -72434773 + L1MA2 LINE L1 6077 6304 0 4568 144 9 0 chrX 104539373 104540062 -72434078 + L1MB2 LINE L1 5473 6167 -4 241 348 19 45 chrX 104541446 104541601 -72432539 + L2 LINE L2 3102 3252 -20 209 306 135 18 chrX 104541657 104541768 -72432372 + L2 LINE L2 3149 3272 0 264 246 70 0 chrX 104544417 104544474 -72429666 - L2 LINE L2 -44 3228 3168 196 240 173 78 chrX 104544726 104544793 -72429347 + L2 LINE L2 3117 3176 -137 1084 194 13 48 chrX 104544793 104545020 -72429120 + MER20 DNA MER1_type 1 219 0 196 240 173 78 chrX 104545020 104545131 -72429009 + L2 LINE L2 3176 3312 -1 538 257 44 7 chrX 104545223 104545359 -72428781 + L2 LINE L2 3132 3272 0 1680 200 72 44 chrX 104545529 104546028 -72428112 - L1MDa LINE L1 -4827 1713 1201 1237 271 45 34 chrX 104546098 104546570 -72427570 - L1MDa LINE L1 -6010 530 54 476 290 113 21 chrX 104546814 104547000 -72427140 - MIR SINE MIR -51 211 9 898 214 0 0 chrX 104547333 104547487 -72426653 + MER45A DNA AcHobo 24 177 -1 1117 30 0 22 chrX 104547760 104547894 -72426246 - L1PA3 LINE L1 0 6155 6025 235 170 19 0 chrX 104547930 104547983 -72426157 + (TA)n Simple_repeat Simple_repeat 2 55 0 196 200 53 0 chrX 104548021 104548116 -72426024 + (TA)n Simple_repeat Simple_repeat 1 100 0 1993 185 35 20 chrX 104548135 104548535 -72425605 - L1MD2 LINE L1 -3 6356 5951 291 141 34 0 chrX 104548540 104548603 -72425537 - L1MD2 LINE L1 -412 5750 5683 226 306 31 62 chrX 104548771 104548931 -72425209 + MIR SINE MIR 63 217 -45 228 135 0 0 chrX 104549590 104549627 -72424513 + (TG)n Simple_repeat Simple_repeat 1 37 0 316 333 60 89 chrX 104549709 104550057 -72424083 - L2 LINE L2 -14 3258 2921 395 242 30 61 chrX 104551343 104551442 -72422698 + L2 LINE L2 3168 3263 -9 329 289 41 0 chrX 104551441 104551538 -72422602 - MIR SINE MIR -98 164 64 * 231 323 0 0 chrX 104551767 104551832 -72422308 + L2 LINE L2 2995 3059 -213 500 202 18 28 chrX 104551911 104552020 -72422120 + MIR SINE MIR 6 113 -149 2001 269 291 41 chrX 104552064 104552749 -72421391 + L3 LINE CR1 1 514 -1063 886 205 33 70 chrX 104552749 104552993 -72421147 + MER106A DNA MER1_type 1 235 -1 2001 269 291 41 chrX 104552993 104553566 -72420574 + L3 LINE CR1 514 1573 -4 423 56 0 0 chrX 104554970 104555024 -72419116 + (CAG)n Simple_repeat Simple_repeat 1 54 0 248 236 0 0 chrX 104556100 104556155 -72417985 + (TG)n Simple_repeat Simple_repeat 1 55 0 347 306 187 0 chrX 104556526 104556660 -72417480 + MIR3 SINE MIR 39 197 -11 298 246 18 55 chrX 104556951 104557061 -72417079 - MIR SINE MIR -56 206 101 224 274 63 21 chrX 104557198 104557293 -72416847 + MIR3 SINE MIR 83 181 -27 185 277 199 43 chrX 104558639 104558780 -72415360 + MIR3 SINE MIR 4 166 -42 257 282 0 39 chrX 104558878 104558956 -72415184 - L2 LINE L2 0 3272 3198 188 261 188 0 chrX 104559055 104559124 -72415016 - MIR SINE MIR -114 148 67 826 42 0 0 chrX 104559154 104559250 -72414890 - AluSg/x SINE Alu -4 308 213 398 253 11 0 chrX 104561213 104561300 -72412840 - MIR SINE MIR -62 146 59 932 115 7 0 chrX 104561772 104561911 -72412229 - L1MA9 LINE L1 0 6312 6173 826 253 5 14 chrX 104562026 104562247 -72411893 - L1MD2 LINE L1 -455 5904 5686 214 326 35 66 chrX 104563398 104563625 -72410515 - L2 LINE L2 -1526 1788 1569 213 341 12 12 chrX 104563914 104563999 -72410141 - MIR SINE MIR 0 262 178 265 277 142 43 chrX 104564088 104564229 -72409911 - MIR SINE MIR -107 155 1 218 323 213 24 chrX 104564414 104564541 -72409599 - L2 LINE L2 -6 3266 3116 27 0 0 0 chrX 104565126 104565153 -72408987 + GC_rich Low_complexity Low_complexity 1 27 0 1515 213 52 31 chrX 104566194 104566579 -72407561 - L1MB8 LINE L1 -3 6175 5783 515 277 43 14 chrX 104568309 104568450 -72405690 + MIR3 SINE MIR 55 199 -9 217 151 38 0 chrX 104568609 104568662 -72405478 + (TA)n Simple_repeat Simple_repeat 1 55 0 2384 85 0 0 chrX 104569004 104569297 -72404843 - AluSq SINE Alu -20 293 1 220 289 87 40 chrX 104570027 104570176 -72403964 + L2 LINE L2 2932 3087 -185 292 223 89 27 chrX 104571283 104571395 -72402745 - L1MC4 LINE L1 -1 8041 7923 618 122 0 0 chrX 104575493 104575591 -72398549 + (TTCC)n Simple_repeat Simple_repeat 2 99 0 858 141 0 0 chrX 104575592 104575713 -72398427 - FRAM SINE Alu -25 151 31 251 54 27 0 chrX 104576034 104576071 -72398069 + (TAA)n Simple_repeat Simple_repeat 3 40 0 352 79 0 32 chrX 104579338 104579401 -72394739 + (CCA)n Simple_repeat Simple_repeat 2 62 0 327 259 19 37 chrX 104580003 104580111 -72394029 + L2 LINE L2 2959 3064 -208 9733 93 18 7 chrX 104581054 104583143 -72390997 + L1PA8 LINE L1 4078 6170 -2 419 321 30 30 chrX 104583160 104583328 -72390812 - MIR SINE MIR -6 256 89 902 219 41 78 chrX 104583613 104583932 -72390208 + L1ME1 LINE L1 5828 6134 -32 1874 248 57 67 chrX 104583987 104584770 -72389370 - L1M3b LINE L1 -4339 2201 1459 375 352 64 19 chrX 104584840 104585107 -72389033 - L2 LINE L2 -187 3085 2807 1540 185 77 0 chrX 104585194 104585481 -72388659 + AluJo SINE Alu 1 309 -3 5365 212 20 8 chrX 104585481 104586694 -72387446 - L1M LINE L1 -808 5338 4117 4831 121 5 70 chrX 104586692 104587410 -72386730 + L1PA16 LINE L1 5362 6016 -150 * 1719 48 0 15 chrX 104587410 104587616 -72386524 + AluY SINE Alu 98 300 -11 4831 121 5 70 chrX 104587616 104587758 -72386382 + L1PA16 LINE L1 6016 6166 0 1485 214 11 22 chrX 104587839 104588208 -72385932 - L1MB8 LINE L1 0 6178 5814 3311 192 19 12 chrX 104587848 104588592 -72385548 - L1MB8 LINE L1 -7 6171 5423 920 168 56 0 chrX 104588627 104588841 -72385299 - L1MA9 LINE L1 -55 6257 6032 * 1005 152 22 0 chrX 104588825 104589009 -72385131 + L1MA9 LINE L1 5866 6053 -259 2651 201 44 39 chrX 104589014 104589916 -72384224 - L1MB8 LINE L1 -735 5439 4540 535 290 37 57 chrX 104590219 104590464 -72383676 - MIR SINE MIR -12 250 11 623 345 128 30 chrX 104591394 104592104 -72382036 - L2 LINE L2 -558 2756 1977 1003 281 125 17 chrX 104592104 104592805 -72381335 - L2 LINE L2 0 3313 2534 249 284 157 8 chrX 104593448 104593582 -72380558 - MIR SINE MIR 0 262 109 23 0 0 0 chrX 104595395 104595418 -72378722 + AT_rich Low_complexity Low_complexity 1 23 0 421 122 61 51 chrX 104595999 104596097 -72378043 - L1MD1 LINE L1 -18 6224 6126 249 255 0 0 chrX 104597539 104597590 -72376550 + L2 LINE L2 3220 3270 -2 2412 75 3 0 chrX 104599225 104599519 -72374621 - AluSp SINE Alu -18 295 1 752 233 18 12 chrX 104599647 104599810 -72374330 - MIR3 SINE MIR -12 196 33 25 65 0 0 chrX 104601434 104601480 -72372660 + AT_rich Low_complexity Low_complexity 1 46 0 301 238 69 10 chrX 104604396 104604497 -72369643 - L1MB8 LINE L1 -2961 3185 3079 380 338 63 58 chrX 104605409 104605856 -72368284 + L2 LINE L2 1896 2344 -970 2066 120 0 28 chrX 104606176 104606514 -72367626 - AluSx SINE Alu 0 330 1 239 332 96 73 chrX 104606528 104607173 -72366967 + L2 LINE L2 2580 3262 -10 276 247 12 35 chrX 104607650 104607735 -72366405 + MIR3 SINE MIR 124 206 -2 352 271 329 7 chrX 104608162 104608317 -72365823 + MIR SINE MIR 37 241 -21 1930 103 77 4 chrX 104609865 104610137 -72364003 - AluSx SINE Alu -20 292 1 456 331 46 75 chrX 104610184 104610465 -72363675 - L2 LINE L2 -12 3260 2988 873 190 50 6 chrX 104610729 104610908 -72363232 - MER5A DNA MER1_type -1 188 2 801 235 12 6 chrX 104610953 104611123 -72363017 + MER5B DNA MER1_type 8 178 0 601 284 77 73 chrX 104661850 104662511 -72311629 + L2 LINE L2 2560 3234 -38 216 204 23 0 chrX 104662517 104662561 -72311579 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 253 279 66 74 chrX 104664119 104664241 -72309899 + L2 LINE L2 3165 3285 -28 383 310 44 32 chrX 104666009 104666202 -72307938 + MIR SINE MIR 27 221 -41 326 271 114 43 chrX 104666490 104666630 -72307510 - L3b LINE CR1 -142 1441 1292 522 283 120 39 chrX 104668397 104668630 -72305510 + MIR SINE MIR 3 254 -8 231 133 0 0 chrX 104669046 104669091 -72305049 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 834 201 105 28 chrX 104669756 104670109 -72304031 + L1ME4a LINE L1 5714 6093 -28 559 220 35 16 chrX 104670374 104670551 -72303589 - MIR SINE MIR -62 146 20 2515 74 0 6 chrX 104674766 104675077 -72299063 - AluY SINE Alu -2 309 1 218 189 0 0 chrX 104677937 104677974 -72296166 + CT-rich Low_complexity Low_complexity 1 37 0 195 42 0 0 chrX 104678642 104678666 -72295474 + (TA)n Simple_repeat Simple_repeat 2 25 0 310 312 98 12 chrX 104679612 104679785 -72294355 - MIR SINE MIR -40 222 35 2010 116 0 51 chrX 104681998 104682309 -72291831 - AluSq SINE Alu -18 295 1 306 0 0 0 chrX 104682328 104682362 -72291778 + (CA)n Simple_repeat Simple_repeat 2 35 0 2199 118 3 0 chrX 104683304 104683610 -72290530 - AluSx SINE Alu -5 307 1 292 244 59 34 chrX 104684342 104684461 -72289679 + MLT1J2 LTR MaLR 35 156 -294 266 217 60 60 chrX 104685877 104685960 -72288180 - L2 LINE L2 0 3313 3231 4648 45 0 17 chrX 104686042 104686625 -72287515 + L1PA5 LINE L1 5576 6148 -6 398 347 44 69 chrX 104686854 104687128 -72287012 - L2 LINE L2 -36 3236 2970 184 282 165 0 chrX 104687668 104687753 -72286387 - L2 LINE L2 -191 3081 2983 205 222 0 44 chrX 104688526 104688571 -72285569 + MIR SINE MIR 113 155 -107 349 299 171 29 chrX 104689099 104689380 -72284760 - L2 LINE L2 -1043 2271 1951 344 271 24 0 chrX 104689894 104689979 -72284161 + MIR SINE MIR 54 140 -68 413 296 74 26 chrX 104690109 104690339 -72283801 - MIR SINE MIR -3 259 19 186 299 35 35 chrX 104690939 104691026 -72283114 + MIR SINE MIR 155 241 -21 * 717 181 13 207 chrX 104690967 104691139 -72283001 - MIR SINE MIR -1 261 129 250 81 0 27 chrX 104691139 104691176 -72282964 - U2 snRNA snRNA -152 36 1 717 181 13 207 chrX 104691176 104691271 -72282869 - MIR SINE MIR -133 129 17 2293 160 6 9 chrX 104691521 104691859 -72282281 - MER1B DNA MER1_type 0 337 1 218 372 21 32 chrX 104692436 104692530 -72281610 - L2 LINE L2 -38 3234 3142 316 243 0 14 chrX 104694684 104694758 -72279382 + MIR SINE MIR 94 166 -96 247 287 65 0 chrX 104694801 104694909 -72279231 + MIR SINE MIR 148 262 0 205 258 0 0 chrX 104695196 104695262 -72278878 + T-rich Low_complexity Low_complexity 1 66 0 221 237 0 0 chrX 104695552 104695590 -72278550 - L2 LINE L2 -86 3186 3149 198 0 0 0 chrX 104696485 104696507 -72277633 + (TC)n Simple_repeat Simple_repeat 1 22 0 207 152 0 0 chrX 104696507 104696553 -72277587 + (CA)n Simple_repeat Simple_repeat 2 47 0 196 207 281 12 chrX 104696661 104696743 -72277397 + MIR SINE MIR 18 121 -87 298 200 0 15 chrX 104699703 104699768 -72274372 - MIR3 SINE MIR -36 172 109 180 0 0 0 chrX 104700680 104700700 -72273440 + (TGGGGG)n Simple_repeat Simple_repeat 5 24 0 378 0 0 0 chrX 104702698 104702740 -72271400 + (TG)n Simple_repeat Simple_repeat 2 43 0 2532 73 0 0 chrX 104704892 104705194 -72268946 + AluSq SINE Alu 8 309 -4 233 254 91 0 chrX 104705457 104705512 -72268628 - MIR SINE MIR -183 79 20 335 290 57 42 chrX 104706524 104706716 -72267424 - MIR3 SINE MIR -50 212 6 701 243 58 101 chrX 104706866 104707134 -72267006 + L1MC4a LINE L1 5511 5449 -856 775 196 19 6 chrX 104707134 104707292 -72266848 - L1MA10 LINE L1 0 6334 6175 701 243 58 101 chrX 104707292 104707472 -72266668 + L1MC4a LINE L1 5448 5634 -671 239 298 128 11 chrX 104708342 104708436 -72265704 + MIR SINE MIR 33 137 -71 21 0 0 0 chrX 104709086 104709107 -72265033 + AT_rich Low_complexity Low_complexity 1 21 0 247 298 76 47 chrX 104709887 104710058 -72264082 - L2 LINE L2 -19 3294 3119 216 344 26 26 chrX 104710139 104710331 -72263809 + L2 LINE L2 2841 3032 -240 649 223 22 80 chrX 104710567 104710791 -72263349 - L1MD3 LINE L1 -1 7994 7784 826 141 39 6 chrX 104710963 104711119 -72263021 + LTR65 LTR ERV1 10 170 -499 695 302 5 19 chrX 104711464 104711676 -72262464 + MIR SINE MIR 1 209 -53 764 205 22 65 chrX 104711691 104711876 -72262264 - MER5B DNA MER1_type -1 177 1 261 155 0 0 chrX 104712063 104712121 -72262019 + T-rich Low_complexity Low_complexity 1 58 0 333 0 0 0 chrX 104712702 104712739 -72261401 + (CA)n Simple_repeat Simple_repeat 1 37 0 288 130 0 0 chrX 104713766 104713812 -72260328 + (CA)n Simple_repeat Simple_repeat 1 46 0 193 315 68 0 chrX 104715936 104716009 -72258131 + L2 LINE L2 3194 3271 -1 223 378 17 34 chrX 104716904 104717023 -72257117 - L2 LINE L2 -2 3270 3154 217 278 120 37 chrX 104717686 104717794 -72256346 - L2 LINE L2 -4 3309 3193 283 324 14 88 chrX 104717901 104718049 -72256091 - L2 LINE L2 -4 3268 3132 971 128 43 6 chrX 104718140 104718304 -72255836 - L1MA8 LINE L1 -7 6284 6115 385 39 0 19 chrX 104718309 104718361 -72255779 - Tigger1 DNA MER2_type -654 1764 1714 1553 161 17 58 chrX 104718371 104718663 -72255477 - AluJb SINE Alu -32 280 1 12237 156 25 16 chrX 104718663 104719252 -72254888 - L1MA8 LINE L1 -167 6124 5542 16299 128 13 17 chrX 104719252 104721678 -72252462 - Tigger1 DNA MER2_type 0 2418 2 12237 156 25 16 chrX 104721678 104723215 -72250925 - L1MA8 LINE L1 -749 5542 4020 2520 182 19 5 chrX 104723215 104723633 -72250507 - MSTB LTR MaLR 0 426 3 9450 191 25 6 chrX 104723635 104725256 -72248884 - MSTB-int LTR MaLR 0 1651 1 2761 151 19 7 chrX 104725256 104725674 -72248466 - MSTB LTR MaLR 0 426 4 12237 156 25 16 chrX 104725674 104726693 -72247447 - L1MA8 LINE L1 -2270 4021 2941 779 227 141 10 chrX 104727372 104727570 -72246570 + MER46C DNA MER2_type 24 247 -91 319 334 0 11 chrX 104727650 104727777 -72246363 - MIR SINE MIR -66 142 30 398 266 36 89 chrX 104728357 104728605 -72245535 - MIR SINE MIR 0 262 28 196 271 0 34 chrX 104729124 104729183 -72244957 + MIR SINE MIR 110 166 -96 * 222 282 64 13 chrX 104729177 104729255 -72244885 + MIR3 SINE MIR 127 208 0 234 0 0 0 chrX 104729735 104729761 -72244379 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 861 283 149 33 chrX 104731006 104731273 -72242867 + L1M4 LINE L1 2852 3087 -3059 1876 147 3 20 chrX 104731273 104731579 -72242561 + AluJo SINE Alu 1 301 -11 861 283 149 33 chrX 104731579 104732334 -72241806 + L1M4 LINE L1 3087 3992 -2154 876 257 59 13 chrX 104732366 104732603 -72241537 + MIR SINE MIR 15 262 0 535 295 46 40 chrX 104732626 104732972 -72241168 + L1M4 LINE L1 4067 4414 -1732 483 271 0 0 chrX 104732975 104733093 -72241047 + MIR SINE MIR 82 199 -63 7072 221 15 26 chrX 104733176 104734941 -72239199 + L1 LINE L1 2516 4263 -1883 4672 104 11 5 chrX 104734941 104735578 -72238562 + L1PA16 LINE L1 5517 6157 -9 7072 221 15 26 chrX 104735578 104735606 -72238534 + L1 LINE L1 4263 4290 -1856 1424 113 52 0 chrX 104736037 104736249 -72237891 - AluSg/x SINE Alu -12 300 78 494 308 86 5 chrX 104736495 104736693 -72237447 - MIR SINE MIR -2 260 47 234 91 0 0 chrX 104737136 104737169 -72236971 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 281 291 61 7 chrX 104737545 104737693 -72236447 + L1MC4a LINE L1 4006 4161 -1985 1756 161 0 11 chrX 104737779 104738053 -72236087 + AluJb SINE Alu 23 293 -19 342 281 86 21 chrX 104738065 104738438 -72235702 + L1MC4a LINE L1 4300 4696 -1450 24 67 0 0 chrX 104738644 104738689 -72235451 + AT_rich Low_complexity Low_complexity 1 45 0 286 278 0 8 chrX 104738768 104738894 -72235246 + L1MC4a LINE L1 5255 5379 -783 411 265 20 7 chrX 104738986 104739137 -72235003 + L1MC5 LINE L1 7290 7442 -519 6314 197 57 22 chrX 104739245 104740408 -72233732 + L1MB7 LINE L1 3427 4547 -1637 1604 164 39 43 chrX 104740408 104740713 -72233427 + AluJo SINE Alu 6 309 -3 6314 197 57 22 chrX 104740713 104742199 -72231941 + L1MB7 LINE L1 4547 6165 -19 440 237 57 56 chrX 104742279 104742583 -72231557 + L1MC4 LINE L1 7609 7920 -55 * 1529 87 9 0 chrX 104742564 104742819 -72231321 - L1P5 LINE L1 -659 5492 5236 387 309 76 37 chrX 104742874 104743256 -72230884 + L1MC4a LINE L1 5508 5904 -1904 243 315 0 22 chrX 104743859 104743948 -72230192 + GA-rich Low_complexity Low_complexity 1 87 0 701 256 7 62 chrX 104747157 104747430 -72226710 + MIR SINE MIR 5 262 0 273 29 0 0 chrX 104748154 104748188 -72225952 + (CA)n Simple_repeat Simple_repeat 2 35 0 591 169 34 8 chrX 104748570 104748688 -72225452 - L2 LINE L2 0 3313 3193 225 313 158 26 chrX 104749852 104750117 -72224023 + L2 LINE L2 2192 2491 -823 2966 280 98 46 chrX 104750403 104752072 -72222068 - L2 LINE L2 -3 3310 1567 224 253 40 27 chrX 104752080 104752155 -72221985 + L2 LINE L2 2682 2757 -557 199 316 92 51 chrX 104752541 104752639 -72221501 + L2 LINE L2 3093 3194 -78 839 267 28 4 chrX 104753078 104753333 -72220807 - MIR SINE MIR 0 262 2 305 311 59 37 chrX 104753366 104753501 -72220639 - MIR SINE MIR -42 220 83 313 213 0 0 chrX 104753672 104753733 -72220407 + MIR SINE MIR 190 250 -12 327 261 125 0 chrX 104755616 104755704 -72218436 + MIR SINE MIR 44 142 -66 405 330 26 19 chrX 104756182 104756446 -72217694 + L1MEd LINE L1 557 822 -5297 2112 125 0 16 chrX 104756561 104756865 -72217275 - AluJo SINE Alu -13 299 1 711 226 40 34 chrX 104757325 104757502 -72216638 + MER45A DNA AcHobo 1 178 0 229 304 0 13 chrX 104757700 104757779 -72216361 - MIR SINE MIR -7 255 178 294 325 227 5 chrX 104759169 104759363 -72214777 - MIR SINE MIR -24 238 2 565 298 66 26 chrX 104759503 104759731 -72214409 - MIR SINE MIR -3 259 23 279 140 0 0 chrX 104759827 104759877 -72214263 + (T)n Simple_repeat Simple_repeat 1 50 0 261 371 112 0 chrX 104760853 104761023 -72213117 - L3 LINE CR1 -5 1572 1384 1096 239 13 4 chrX 104761048 104761287 -72212853 - MIR SINE MIR -16 246 6 226 378 45 18 chrX 104761523 104761634 -72212506 - MIR3 SINE MIR -87 121 8 689 312 36 28 chrX 104761692 104761945 -72212195 - MIR SINE MIR 0 262 8 223 232 125 0 chrX 104762204 104762260 -72211880 - L2 LINE L2 -11 3261 3199 376 290 77 71 chrX 104762577 104762627 -72211513 + L1ME LINE L1 5261 5309 -812 2016 158 0 0 chrX 104762627 104762931 -72211209 + AluSx SINE Alu 1 304 -8 376 290 77 71 chrX 104762931 104763201 -72210939 + L1ME LINE L1 5309 5586 -535 1839 130 88 25 chrX 104763201 104763554 -72210586 + THE1C LTR MaLR 1 375 0 376 290 77 71 chrX 104763554 104763589 -72210551 + L1ME LINE L1 5586 5619 -502 279 259 52 86 chrX 104763851 104763967 -72210173 + MIR SINE MIR 35 146 -62 291 310 115 35 chrX 104764011 104764185 -72209955 + MIR SINE MIR 63 250 -12 1886 177 0 16 chrX 104764685 104765053 -72209087 - AluJb SINE Alu 0 363 1 413 212 91 10 chrX 104765068 104765167 -72208973 - MIR SINE MIR -73 135 29 210 286 16 0 chrX 104765559 104765622 -72208518 + CT-rich Low_complexity Low_complexity 1 64 0 1558 183 111 0 chrX 104767697 104768117 -72206023 - Charlie4a DNA MER1_type -1 507 22 311 171 27 18 chrX 104769202 104769313 -72204827 + (TCCA)n Simple_repeat Simple_repeat 4 115 0 3802 127 21 2 chrX 104769610 104770234 -72203906 + Tigger2 DNA MER2_type 109 744 -1974 1343 167 4 37 chrX 104770297 104770567 -72203573 + Tigger2 DNA MER2_type 2458 2718 0 1671 188 3 13 chrX 104770707 104771021 -72203119 - AluJo SINE Alu -1 311 1 509 211 141 0 chrX 104771071 104771199 -72202941 + MIR SINE MIR 117 262 0 473 114 11 0 chrX 104771373 104771461 -72202679 - L1MB4 LINE L1 0 6180 6092 2597 72 13 24 chrX 104771470 104771847 -72202293 - L1PB1 LINE L1 -3 6864 6492 293 155 17 0 chrX 104771847 104771905 -72202235 + (TA)n Simple_repeat Simple_repeat 1 59 0 13997 186 15 12 chrX 104771905 104775368 -72198772 - L1PB1 LINE L1 -360 6507 2801 6876 67 0 6 chrX 104775368 104776984 -72197156 + L1PA7 LINE L1 4543 6154 0 13997 186 15 12 chrX 104776984 104779160 -72194980 - L1PB1 LINE L1 -4066 2801 634 1110 149 5 0 chrX 104779161 104779355 -72194785 - L1PB1 LINE L1 -6666 197 3 7151 238 29 31 chrX 104779371 104780153 -72193987 - L1MB3 LINE L1 -82 6101 5319 1758 179 23 10 chrX 104780153 104780461 -72193679 - AluJb SINE Alu 0 312 1 7151 238 29 31 chrX 104780461 104782666 -72191474 - L1MB3 LINE L1 -864 5319 3160 209 33 33 0 chrX 104782666 104782696 -72191444 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 7151 238 29 31 chrX 104782696 104782958 -72191182 - L1MB3 LINE L1 -3023 3160 2899 353 180 30 10 chrX 104783130 104783230 -72190910 + CT-rich Low_complexity Low_complexity 3 104 0 195 42 0 0 chrX 104783433 104783457 -72190683 + (CA)n Simple_repeat Simple_repeat 2 25 0 3373 160 41 5 chrX 104783954 104784120 -72190020 + L1MB2 LINE L1 5121 5280 -891 228 67 0 0 chrX 104784120 104784150 -72189990 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3373 160 41 5 chrX 104784150 104784742 -72189398 + L1MB2 LINE L1 5280 5898 -273 351 237 140 0 chrX 104784887 104785001 -72189139 - MIR SINE MIR -26 236 107 184 395 60 16 chrX 104785139 104785324 -72188816 - L2 LINE L2 -214 3058 2866 280 311 119 47 chrX 104785698 104785975 -72188165 - L2 LINE L2 -557 2757 2461 377 326 64 2 chrX 104786578 104786769 -72187371 + MIR SINE MIR 22 219 -43 1390 199 48 20 chrX 104786878 104787170 -72186970 + AluJo SINE Alu 1 300 -12 372 328 0 49 chrX 104787946 104788129 -72186011 + L1MC4a LINE L1 5732 5905 -1903 305 228 0 50 chrX 104788846 104788947 -72185193 - MIR SINE MIR -9 253 158 2879 154 12 2 chrX 104789102 104789524 -72184616 - MSTB LTR MaLR 0 426 1 222 314 58 19 chrX 104789756 104789912 -72184228 - MIR SINE MIR -58 204 43 551 313 57 16 chrX 104790019 104790211 -72183929 + MIR SINE MIR 63 262 0 539 192 10 0 chrX 104790818 104790922 -72183218 + L1MB5 LINE L1 6070 6174 0 484 292 26 31 chrX 104791177 104791369 -72182771 - MIR SINE MIR -49 213 23 497 284 53 42 chrX 104791611 104791801 -72182339 - MIR SINE MIR -19 243 52 758 220 19 6 chrX 104791895 104792054 -72182086 - MIR SINE MIR -73 189 29 817 254 10 25 chrX 104792911 104793134 -72181006 + AluJb SINE Alu 115 334 0 350 248 219 0 chrX 104793135 104793240 -72180900 + MER5A DNA MER1_type 62 189 0 1515 205 16 22 chrX 104793377 104793749 -72180391 - L1MD3 LINE L1 0 8042 7687 611 231 28 14 chrX 104793759 104793902 -72180238 + MER5B DNA MER1_type 34 178 0 834 274 4 34 chrX 104795864 104796098 -72178042 - MIR SINE MIR -20 242 16 239 288 41 0 chrX 104796222 104796295 -72177845 + L2 LINE L2 3014 3089 -183 346 354 32 19 chrX 104796386 104796544 -72177596 + L3 LINE CR1 1415 1574 -3 944 185 92 0 chrX 104796884 104797057 -72177083 - MER5A DNA MER1_type 0 189 1 336 279 14 21 chrX 104797149 104797289 -72176851 + MIR3 SINE MIR 24 162 -46 1071 227 36 8 chrX 104797563 104797810 -72176330 + MIR SINE MIR 5 258 -4 21 0 0 0 chrX 104797918 104797939 -72176201 + AT_rich Low_complexity Low_complexity 1 21 0 647 281 130 17 chrX 104798803 104799102 -72175038 + L2 LINE L2 2860 3192 -121 2106 203 25 11 chrX 104799169 104799612 -72174528 - L1MD3 LINE L1 -10 7985 7537 404 184 11 58 chrX 104799616 104799703 -72174437 + L2 LINE L2 3209 3291 -22 34 34 0 17 chrX 104799948 104799971 -72174169 + AT_rich Low_complexity Low_complexity 1 23 -35 2044 120 25 0 chrX 104799971 104800255 -72173885 - AluSx SINE Alu -21 291 1 34 34 0 17 chrX 104800255 104800290 -72173850 + AT_rich Low_complexity Low_complexity 23 58 0 266 281 0 0 chrX 104800347 104800404 -72173736 + MIR SINE MIR 13 69 -193 205 146 98 0 chrX 104800463 104800504 -72173636 - L2 LINE L2 -1 3271 3227 545 162 120 0 chrX 104801159 104801276 -72172864 - L2 LINE L2 0 3313 3183 4357 246 73 31 chrX 104801295 104801887 -72172253 + L2 LINE L2 1679 2244 -1069 2044 186 28 17 chrX 104801887 104802247 -72171893 - MLT1A1 LTR MaLR 0 365 2 4357 246 73 31 chrX 104802247 104803065 -72171075 + L2 LINE L2 2244 3155 -158 1114 184 20 5 chrX 104803065 104803266 -72170874 - MLT1B LTR MaLR 0 390 187 225 65 0 0 chrX 104803286 104803317 -72170823 + (GA)n Simple_repeat Simple_repeat 1 31 0 818 201 0 34 chrX 104803320 104803499 -72170641 - MLT1B LTR MaLR -201 173 1 493 273 12 19 chrX 104803512 104803673 -72170467 + L2 LINE L2 3150 3309 -4 909 306 54 59 chrX 104803678 104803749 -72170391 - L2 LINE L2 -148 3165 3095 714 234 23 29 chrX 104803749 104803924 -72170216 - MER5B DNA MER1_type -4 174 1 909 306 54 59 chrX 104803924 104804446 -72169694 - L2 LINE L2 -218 3095 2571 322 303 64 0 chrX 104804934 104805043 -72169097 - MIR SINE MIR 0 262 147 307 301 30 45 chrX 104805123 104805256 -72168884 - MIR SINE MIR -114 148 18 486 312 34 17 chrX 104805789 104806056 -72168084 + L1MC4a LINE L1 5690 5967 -154 1601 307 57 64 chrX 104806369 104807243 -72166897 + L3 LINE CR1 567 1434 -143 1162 276 25 77 chrX 104807511 104808133 -72166007 + L2 LINE L2 2705 3304 -9 854 272 0 0 chrX 104808340 104808535 -72165605 - MIR SINE MIR -2 260 66 425 309 0 7 chrX 104808594 104808730 -72165410 - MIR SINE MIR -1 261 127 1877 160 0 13 chrX 104808788 104809101 -72165039 - AluJo SINE Alu -3 309 1 222 306 73 24 chrX 104809494 104809618 -72164522 + L2 LINE L2 3182 3311 -2 449 246 20 80 chrX 104809649 104809856 -72164284 - MIR SINE MIR -43 219 9 435 313 110 6 chrX 104810156 104810338 -72163802 + MIR3 SINE MIR 5 205 -3 509 322 23 17 chrX 104810338 104810515 -72163625 + Charlie8 DNA MER1_type 1 178 -2239 225 225 100 12 chrX 104810505 104810585 -72163555 + Charlie8 DNA MER1_type 84 170 -2247 * 362 225 38 0 chrX 104810754 104810834 -72163306 + Charlie8 DNA MER1_type 168 250 -2167 227 209 11 66 chrX 104811423 104811514 -72162626 - L1MC4 LINE L1 -1336 6706 6621 530 274 77 0 chrX 104811519 104811687 -72162453 + MER112 DNA MER1_type 79 259 -1 421 222 111 37 chrX 104811690 104811825 -72162315 + MER5A DNA MER1_type 1 145 -44 323 263 185 54 chrX 104811900 104812105 -72162035 - MIR SINE MIR -15 247 16 291 289 23 0 chrX 104812361 104812449 -72161691 - MIR SINE MIR -73 135 35 294 95 0 0 chrX 104813156 104813198 -72160942 + (CA)n Simple_repeat Simple_repeat 2 43 0 302 230 69 23 chrX 104813225 104813312 -72160828 + MIR3 SINE MIR 111 201 -7 512 241 73 27 chrX 104814087 104814274 -72159866 + MIR SINE MIR 64 258 -4 536 265 38 15 chrX 104814460 104814592 -72159548 - L2 LINE L2 0 3272 3138 490 316 98 20 chrX 104814591 104814835 -72159305 - L2 LINE L2 -337 2977 2715 * 1523 159 0 0 chrX 104814868 104815100 -72159040 - AluJb SINE Alu -80 232 1 243 283 33 17 chrX 104815179 104815239 -72158901 - MER91B DNA MER1_type -1 189 129 189 107 0 0 chrX 104815594 104815622 -72158518 + (TG)n Simple_repeat Simple_repeat 1 28 0 299 224 0 112 chrX 104815751 104815849 -72158291 - MER91B DNA MER1_type -103 87 1 * 1071 309 10 0 chrX 104815849 104816162 -72157978 - L2 LINE L2 -655 2659 2344 336 111 0 0 chrX 104816383 104816398 -72157742 + (CA)n Simple_repeat Simple_repeat 1 69 0 336 111 0 0 chrX 104816398 104816452 -72157688 + (CA)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chrX 104817322 104817344 -72156796 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 778 248 32 40 chrX 104817426 104817676 -72156464 - MIR SINE MIR 0 262 15 237 329 88 34 chrX 104817767 104818095 -72156045 + L2 LINE L2 2221 2566 -748 649 219 19 32 chrX 104818126 104818281 -72155859 - MLT1E1 LTR MaLR -49 605 392 1825 214 38 24 chrX 104818288 104818376 -72155764 - L1MC4 LINE L1 -46 7996 7911 252 0 0 0 chrX 104818376 104818404 -72155736 + (CA)n Simple_repeat Simple_repeat 2 29 0 1825 214 38 24 chrX 104818404 104818781 -72155359 - L1MC4 LINE L1 -131 7911 7403 4486 118 33 2 chrX 104818792 104819425 -72154715 + MER39B LTR ERV1 1 653 0 1560 198 228 129 chrX 104819592 104820113 -72154027 + MLT1E2 LTR MaLR 1 545 -81 3677 219 30 36 chrX 104820116 104820353 -72153787 + L1MB8 LINE L1 2937 3174 -2972 2274 83 20 0 chrX 104820353 104820655 -72153485 + AluY SINE Alu 1 308 -3 3677 219 30 36 chrX 104820655 104821160 -72152980 + L1MB8 LINE L1 3174 3674 -2472 840 55 62 0 chrX 104821160 104821305 -72152835 + GA-rich Low_complexity Low_complexity 2 155 0 3677 219 30 36 chrX 104821305 104821624 -72152516 + L1MB8 LINE L1 3674 3993 -2153 4478 210 21 18 chrX 104821648 104822704 -72151436 + L1M4 LINE L1 3739 4797 -1349 265 217 67 0 chrX 104822759 104822819 -72151321 + L1MB8 LINE L1 4015 4078 -2068 17044 68 3 0 chrX 104822830 104825702 -72148438 - L1PA6 LINE L1 -4 6150 3271 13755 97 23 17 chrX 104825702 104827727 -72146413 - L1PA6 LINE L1 -3478 2668 631 306 175 125 25 chrX 104827720 104827800 -72146340 + L1MB8 LINE L1 4088 4175 -1971 * 316 239 0 22 chrX 104827797 104827889 -72146251 + L1MC4 LINE L1 6614 6703 -1339 2326 214 12 2 chrX 104827905 104828418 -72145722 + L1MB8 LINE L1 4787 5304 -842 2474 167 25 2 chrX 104828425 104828857 -72145283 + L1MB8 LINE L1 5721 6162 -16 1039 228 69 20 chrX 104828874 104829177 -72144963 + L1M4 LINE L1 4015 4332 -1814 2926 67 3 0 chrX 104829178 104829536 -72144604 - L1PA8 LINE L1 -9 6163 5805 1619 107 4 20 chrX 104829536 104829789 -72144351 + L1P LINE L1 5155 5403 -743 1960 225 54 6 chrX 104829805 104830339 -72143801 + L1M4 LINE L1 4326 4885 -1261 696 227 163 20 chrX 104830911 104831162 -72142978 - L1ME4a LINE L1 -11 6110 5824 220 186 14 14 chrX 104831261 104831331 -72142809 + CT-rich Low_complexity Low_complexity 1 70 0 623 306 23 49 chrX 104831702 104831774 -72142366 - MIR SINE MIR 0 262 190 1114 236 19 12 chrX 104831774 104832033 -72142107 + MIR SINE MIR 2 262 0 623 306 23 49 chrX 104832033 104832225 -72141915 - MIR SINE MIR -72 190 5 482 107 0 12 chrX 104832850 104832934 -72141206 + (CAGC)n Simple_repeat Simple_repeat 2 84 0 265 287 81 0 chrX 104833150 104833237 -72140903 + MER91C DNA MER1_type 30 123 -17 622 157 141 16 chrX 104833294 104833458 -72140682 + MER5A DNA MER1_type 4 189 0 501 357 34 17 chrX 104833506 104833741 -72140399 + MIR SINE MIR 24 262 0 476 266 109 49 chrX 104833949 104834133 -72140007 - MIR3 SINE MIR -2 206 12 1031 334 167 21 chrX 104835224 104836552 -72137588 - L2 LINE L2 -579 2735 1054 561 236 169 0 chrX 104836552 104836700 -72137440 + MER5B DNA MER1_type 5 177 -1 1031 334 167 21 chrX 104836700 104837079 -72137061 - L2 LINE L2 -2260 1054 732 916 261 180 33 chrX 104837081 104837631 -72136509 + L2 LINE L2 2700 3312 -1 32 43 0 0 chrX 104837839 104837885 -72136255 + AT_rich Low_complexity Low_complexity 1 46 0 196 372 27 34 chrX 104837955 104838099 -72136041 - L2 LINE L2 -2814 500 358 704 249 0 18 chrX 104838099 104838264 -72135876 + MER5B DNA MER1_type 1 162 -16 196 339 62 0 chrX 104838948 104839013 -72135127 - L2 LINE L2 -63 3209 3141 1122 292 135 29 chrX 104839059 104839977 -72134163 + L2 LINE L2 2311 3313 0 558 222 0 8 chrX 104840347 104840464 -72133676 + MIR SINE MIR 147 262 0 638 181 38 0 chrX 104840468 104840601 -72133539 + MIR SINE MIR 125 262 0 658 240 104 5 chrX 104841415 104841607 -72132533 - MIR SINE MIR -1 261 51 620 230 60 55 chrX 104841674 104841888 -72132252 - MIR SINE MIR -59 203 1 238 365 0 0 chrX 104842004 104842078 -72132062 - MIR SINE MIR -69 139 66 972 151 0 25 chrX 104842131 104842290 -72131850 - FRAM SINE Alu -30 146 1 308 333 98 0 chrX 104843242 104843365 -72130775 + MIR SINE MIR 1 135 -127 550 264 28 7 chrX 104843465 104843609 -72130531 + MIR SINE MIR 104 250 -12 425 197 68 43 chrX 104844330 104844447 -72129693 - MER5B DNA MER1_type -30 148 29 497 298 5 61 chrX 104844486 104844684 -72129456 - MIR3 SINE MIR -19 189 3 21 0 0 0 chrX 104845038 104845059 -72129081 + AT_rich Low_complexity Low_complexity 1 21 0 404 265 119 32 chrX 104846339 104846558 -72127582 + L1ME LINE L1 5499 5736 -385 * 1023 247 64 89 chrX 104846540 104847275 -72126865 + L1ME4a LINE L1 5122 5828 -293 1760 69 0 9 chrX 104847275 104847493 -72126647 + L1PA8 LINE L1 5955 6170 -2 1023 247 64 89 chrX 104847493 104847631 -72126509 + L1ME4a LINE L1 5828 5968 -153 212 202 24 36 chrX 104848775 104848859 -72125281 + C-rich Low_complexity Low_complexity 2 84 0 252 260 66 112 chrX 104849911 104850169 -72123971 - MIR SINE MIR 0 262 17 669 217 51 6 chrX 104850202 104850359 -72123781 - MER103 DNA DNA -1 165 2 739 327 76 60 chrX 104851613 104851995 -72122145 + L2 LINE L2 2874 3261 -11 285 29 0 0 chrX 104852657 104852691 -72121449 + (CA)n Simple_repeat Simple_repeat 2 35 0 267 275 8 23 chrX 104853353 104853484 -72120656 + GA-rich Low_complexity Low_complexity 3 131 0 483 282 44 50 chrX 104854453 104854634 -72119506 - MIR SINE MIR -50 212 33 214 255 20 0 chrX 104855103 104855154 -72118986 + MIR SINE MIR 7 58 -204 332 271 32 5 chrX 104856222 104856338 -72117802 - MIR3 SINE MIR -31 177 57 253 286 143 8 chrX 104909324 104909450 -72064690 - MER103 DNA DNA 0 166 24 3178 221 43 27 chrX 104909881 104911075 -72063065 + L1MD2 LINE L1 4768 6103 -256 773 126 7 7 chrX 104911177 104911312 -72062828 + L1MB3 LINE L1 6039 6173 -10 26 30 0 0 chrX 104911456 104911489 -72062651 + AT_rich Low_complexity Low_complexity 1 33 0 506 224 63 21 chrX 104912473 104912616 -72061524 + MIR SINE MIR 97 245 -17 414 234 0 0 chrX 104912686 104912763 -72061377 - Tigger5 DNA MER2_type -2246 77 1 1149 185 26 13 chrX 104913014 104913246 -72060894 + L1MB7 LINE L1 5930 6164 -20 420 216 0 21 chrX 104913814 104913911 -72060229 - MER5A DNA MER1_type -86 103 9 267 303 21 62 chrX 104914392 104914537 -72059603 + MIR SINE MIR 118 256 -6 6540 83 133 0 chrX 104915171 104916147 -72057993 + L1P LINE L1 4 1109 -5037 311 284 106 109 chrX 104916721 104917052 -72057088 + L2 LINE L2 2939 3268 -4 488 264 77 34 chrX 104917154 104917335 -72056805 - MER20B DNA MER1_type 0 219 29 741 211 38 34 chrX 104918000 104918209 -72055931 + MIR SINE MIR 41 250 -12 888 171 0 0 chrX 104918834 104918986 -72055154 - FRAM SINE Alu -5 171 20 3117 188 62 24 chrX 104919527 104920223 -72053917 + L1MB7 LINE L1 5432 6153 -31 25 0 0 0 chrX 104922512 104922537 -72051603 + GC_rich Low_complexity Low_complexity 1 25 0 554 347 12 6 chrX 104923610 104923780 -72050360 - MIR3 SINE MIR -17 191 21 191 279 33 16 chrX 104923782 104923843 -72050297 - MIR SINE MIR -110 152 91 462 237 101 7 chrX 104924647 104924786 -72049354 - L2 LINE L2 -4 3309 3158 324 274 60 85 chrX 104924820 104925201 -72048939 + MLT1H LTR MaLR 41 380 -29 228 154 0 0 chrX 104925224 104925276 -72048864 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 384 206 76 46 chrX 104925369 104925500 -72048640 - L2 LINE L2 -417 2897 2763 11776 26 7 10 chrX 104925509 104927658 -72046482 - L1PA2 LINE L1 0 6155 4050 360 257 97 21 chrX 104928047 104928191 -72045949 + MIR3 SINE MIR 54 208 0 5514 242 78 48 chrX 104928491 104928620 -72045520 - L1M4 LINE L1 -1037 5109 4985 2241 173 3 16 chrX 104928620 104928990 -72045150 + MLT1A1 LTR MaLR 1 365 0 5514 242 78 48 chrX 104928990 104929332 -72044808 - L1M4 LINE L1 -1161 4985 4655 2033 93 4 0 chrX 104929332 104929591 -72044549 - L1PB2 LINE L1 -7 6144 5885 5514 242 78 48 chrX 104929591 104931390 -72042750 - L1M4 LINE L1 -1491 4655 2770 1019 251 22 32 chrX 104931390 104931705 -72042435 - MLT1C LTR MaLR 0 467 156 7853 32 7 1 chrX 104931907 104932920 -72041220 + L1PA4 LINE L1 5135 6152 -3 224 244 0 0 chrX 104932938 104932979 -72041161 - MER5B DNA MER1_type -137 41 1 437 216 28 110 chrX 104933700 104933918 -72040222 - L1MC4 LINE L1 -17 8025 7826 3623 220 52 16 chrX 104933958 104935093 -72039047 - L1ME2 LINE L1 -10 6154 4956 2124 186 3 16 chrX 104935093 104935463 -72038677 + MLT1A1 LTR MaLR 1 365 0 3623 220 52 16 chrX 104935463 104935711 -72038429 - L1ME2 LINE L1 -1208 4956 4718 369 0 0 0 chrX 104936445 104936486 -72037654 + (CA)n Simple_repeat Simple_repeat 2 42 0 468 171 117 45 chrX 104936491 104936602 -72037538 - MER5B DNA MER1_type -59 119 1 4236 249 99 24 chrX 104936664 104938221 -72035919 + L2 LINE L2 1638 3312 -1 186 43 0 0 chrX 104938312 104938335 -72035805 + (T)n Simple_repeat Simple_repeat 1 23 0 412 207 189 0 chrX 104938343 104938454 -72035686 + MIR SINE MIR 1 132 -130 592 139 0 0 chrX 104938586 104938672 -72035468 + AluJ/FLAM SINE Alu 1 86 -226 1551 147 21 7 chrX 104938672 104938951 -72035189 - MSTB2 LTR MaLR -160 297 15 1276 163 4 26 chrX 104939080 104939350 -72034790 + L1MD3 LINE L1 7730 7993 -2 1274 105 0 6 chrX 104939361 104939532 -72034608 + AluSx SINE Alu 1 170 -142 197 322 11 46 chrX 104940475 104940562 -72033578 + MER5A DNA MER1_type 1 84 -105 198 360 55 18 chrX 104940659 104940823 -72033317 + L2 LINE L2 2291 2460 -854 272 148 0 74 chrX 104941275 104941329 -72032811 - MIR SINE MIR -12 250 201 * 363 258 11 21 chrX 104941327 104941420 -72032720 - MIR SINE MIR -169 93 2 236 267 20 20 chrX 104942097 104942198 -72031942 + GA-rich Low_complexity Low_complexity 4 104 0 348 125 0 167 chrX 104942202 104942298 -72031842 + MSTD LTR MaLR 317 396 0 180 0 0 0 chrX 104942458 104942478 -72031662 + (CAG)n Simple_repeat Simple_repeat 3 22 0 351 0 0 0 chrX 104943013 104943052 -72031088 + (TA)n Simple_repeat Simple_repeat 1 39 0 4825 162 12 39 chrX 104943451 104944379 -72029761 + MER4D LTR ERV1 1 903 0 1548 281 58 19 chrX 104944831 104945364 -72028776 - MLT1G LTR MaLR -29 561 8 2717 83 25 5 chrX 104946607 104947002 -72027138 + L1MA1 LINE L1 5900 6302 0 258 352 0 0 chrX 104947035 104947160 -72026980 + L1ME LINE L1 5731 5855 -315 23 54 0 0 chrX 104947227 104947264 -72026876 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chrX 104947272 104947302 -72026838 + AT_rich Low_complexity Low_complexity 1 30 0 1266 153 0 0 chrX 104947662 104947852 -72026288 - AluJb SINE Alu -8 304 115 255 236 153 14 chrX 104948858 104948930 -72025210 + MIR SINE MIR 66 147 -61 374 329 71 7 chrX 104948939 104949094 -72025046 + MIR3 SINE MIR 44 208 0 580 255 96 63 chrX 104949702 104949933 -72024207 + MIR SINE MIR 5 254 -8 573 331 27 33 chrX 104949962 104950146 -72023994 - MIR3 SINE MIR -11 197 15 21 0 0 0 chrX 104950525 104950546 -72023594 + AT_rich Low_complexity Low_complexity 1 21 0 192 176 0 0 chrX 104951095 104951129 -72023011 - L2 LINE L2 -8 3305 3272 249 371 0 0 chrX 104951256 104951318 -72022822 - MIR SINE MIR -196 66 5 180 0 0 0 chrX 104952225 104952245 -72021895 + (TTTTTG)n Simple_repeat Simple_repeat 5 24 0 1114 178 26 9 chrX 104952247 104952478 -72021662 - L1MB7 LINE L1 -20 6164 5930 391 234 0 0 chrX 104952729 104952806 -72021334 + Tigger5 DNA MER2_type 1 77 -2246 262 232 0 0 chrX 104952814 104952870 -72021270 + Tigger5 DNA MER2_type 2268 2323 0 516 236 62 25 chrX 104952876 104953037 -72021103 - MIR SINE MIR -17 245 79 555 265 65 43 chrX 104953183 104953226 -72020914 - MER5A DNA MER1_type 0 189 148 2291 85 7 0 chrX 104953226 104953519 -72020621 - AluSc SINE Alu -14 295 1 555 265 65 43 chrX 104953519 104953660 -72020480 - MER5A DNA MER1_type -41 148 1 968 167 0 0 chrX 104954098 104954260 -72019880 + MIR SINE MIR 38 199 -63 3292 135 72 78 chrX 104954281 104954833 -72019307 + LTR1 LTR ERV1 12 559 -226 2228 100 0 3 chrX 104954833 104955134 -72019006 + AluSx SINE Alu 13 312 0 3292 135 72 78 chrX 104955134 104955360 -72018780 + LTR1 LTR ERV1 559 785 0 722 202 11 44 chrX 104955366 104955549 -72018591 - AluJb SINE Alu -2 310 134 208 305 17 0 chrX 104955551 104955610 -72018530 + MIR SINE MIR 194 253 -9 687 248 30 60 chrX 104955731 104955965 -72018175 + MIR SINE MIR 30 256 -6 665 236 40 6 chrX 104956289 104956463 -72017677 - L1PB4 LINE L1 -1251 4895 4716 * 4699 149 20 33 chrX 104956462 104957735 -72016405 + L1PB4 LINE L1 4893 6154 -2 383 393 45 16 chrX 104957747 104957989 -72016151 + L2 LINE L2 3010 3258 -14 668 249 46 59 chrX 104958839 104959071 -72015069 + MIR SINE MIR 16 241 -11 1973 221 24 73 chrX 104959076 104959758 -72014382 - MER20B DNA MER1_type -36 747 100 1093 277 18 33 chrX 104959995 104960389 -72013751 - MER20B DNA MER1_type -296 487 100 695 250 75 46 chrX 104960870 104961110 -72013030 + MIR SINE MIR 15 261 -1 241 333 103 34 chrX 104961117 104961351 -72012789 + L2 LINE L2 2364 2613 -701 1163 241 16 0 chrX 104961570 104961819 -72012321 + MIR SINE MIR 5 257 -5 2174 247 77 10 chrX 104962955 104963877 -72010263 - L1ME LINE L1 -2393 3687 2704 1234 243 6 19 chrX 104963877 104964190 -72009950 - MLT1C LTR MaLR 0 467 159 2622 263 87 57 chrX 104964231 104964412 -72009728 - L1ME LINE L1 -4482 1779 1605 2309 147 28 33 chrX 104964412 104964840 -72009300 - MSTB LTR MaLR 0 426 1 2622 263 87 57 chrX 104964840 104966347 -72007793 - L1ME LINE L1 -4656 1605 6 715 255 19 34 chrX 104966605 104966868 -72007272 + MIR SINE MIR 4 262 0 434 289 24 47 chrX 104966909 104967165 -72006975 - L1MD2 LINE L1 -517 5842 5587 40032 39 26 1 chrX 104967408 104972620 -72001520 + L1P LINE L1 4 5346 -800 538 276 180 28 chrX 104973302 104973519 -72000621 + MIR SINE MIR 5 254 -8 616 321 27 33 chrX 104973548 104973732 -72000408 - MIR3 SINE MIR -11 197 15 23 0 0 0 chrX 104974108 104974131 -72000009 + AT_rich Low_complexity Low_complexity 1 23 0 323 279 0 0 chrX 104976117 104976196 -71997944 - MIR3 SINE MIR -15 193 115 384 286 148 39 chrX 104976615 104976797 -71997343 + MIR3 SINE MIR 3 204 -4 782 260 5 10 chrX 104977355 104977555 -71996585 - MER63A DNA MER1_type 0 210 12 1418 71 0 0 chrX 104977609 104977793 -71996347 + L1PA5 LINE L1 5971 6154 0 653 262 46 38 chrX 104977855 104978118 -71996022 - Charlie8 DNA MER1_type -2152 265 1 194 290 214 23 chrX 104978688 104978819 -71995321 - MIR SINE MIR -10 252 97 572 239 14 7 chrX 104979864 104980006 -71994134 - MLT1I LTR MaLR -255 154 12 3376 44 0 0 chrX 104980031 104980442 -71993698 - L1PA5 LINE L1 0 6154 5744 2943 245 26 16 chrX 104980881 104981804 -71992336 + L1MD2 LINE L1 4299 5230 -916 4755 159 45 22 chrX 104981808 104982788 -71991352 + L1MD2 LINE L1 5357 6358 -1 294 150 43 7 chrX 104983069 104983138 -71991002 + MLT1G1 LTR MaLR 465 581 0 205 273 0 23 chrX 104983342 104983386 -71990754 - L2 LINE L2 -91 3181 3139 228 35 0 0 chrX 104983701 104983730 -71990410 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 215 273 36 0 chrX 104983731 104983786 -71990354 + MIR SINE MIR 96 152 -110 621 329 12 6 chrX 104983788 104983958 -71990182 + MIR3 SINE MIR 21 191 -17 182 36 0 36 chrX 104987045 104987073 -71987067 + (GAAAA)n Simple_repeat Simple_repeat 5 31 0 772 162 44 0 chrX 104988045 104988181 -71985959 + L1PB4 LINE L1 6011 6152 -4 230 331 100 6 chrX 104988683 104988843 -71985297 + L1ME LINE L1 5685 5859 -262 25 51 0 0 chrX 104988850 104988889 -71985251 + AT_rich Low_complexity Low_complexity 1 39 0 467 299 116 23 chrX 104988954 104989588 -71984552 - L1ME4a LINE L1 -95 6026 5337 362 304 111 15 chrX 104989642 104989912 -71984228 - L1ME4a LINE L1 -907 5239 4944 601 297 43 26 chrX 104991550 104991782 -71982358 + MIR SINE MIR 25 260 -2 417 284 57 14 chrX 104991813 104991954 -71982186 - MIR3 SINE MIR -59 149 3 215 333 43 11 chrX 104992256 104992349 -71981791 + MIR3 SINE MIR 10 105 -103 271 253 89 27 chrX 104993126 104993272 -71980868 - L1ME4a LINE L1 -1 6120 5966 1719 167 0 0 chrX 104993345 104993633 -71980507 - L1PB4 LINE L1 0 6156 5869 1964 86 0 8 chrX 104994249 104994505 -71979635 + AluSg SINE Alu 37 290 -20 1120 125 5 3 chrX 104995626 104995827 -71978313 + AluSq SINE Alu 29 297 -16 859 301 0 8 chrX 104996561 104996797 -71977343 + MIR SINE MIR 29 262 0 24 0 0 0 chrX 104997865 104997889 -71976251 + AT_rich Low_complexity Low_complexity 1 24 0 881 310 107 11 chrX 104998091 104998626 -71975514 + L1ME4a LINE L1 5348 5933 -188 324 258 73 16 chrX 104998649 104998773 -71975367 + L1MCa LINE L1 4 134 -6292 * 7194 170 19 21 chrX 104998763 104999695 -71974445 + L1MC1 LINE L1 4140 5072 -1261 5590 127 20 5 chrX 104999695 105001034 -71973106 - L1PA15 LINE L1 -7 6158 4806 7194 170 19 21 chrX 105001034 105002294 -71971846 + L1MC1 LINE L1 5072 6330 -3 1784 222 72 68 chrX 105002361 105003355 -71970785 + L1MCa LINE L1 1531 2528 -3898 360 229 55 18 chrX 105003382 105003491 -71970649 - L1MA9 LINE L1 -38 6274 6162 880 232 21 50 chrX 105004305 105004585 -71969555 - L1MA9 LINE L1 -176 6136 5865 467 198 20 0 chrX 105004582 105004683 -71969457 + L1MA9 LINE L1 5785 5887 -302 * 3126 231 26 16 chrX 105004675 105005213 -71968927 + L1MCa LINE L1 2514 3066 -3360 2444 53 13 0 chrX 105005213 105005512 -71968628 - AluY SINE Alu -8 303 1 3126 231 26 16 chrX 105005512 105005859 -71968281 + L1MCa LINE L1 3066 3408 -3018 404 119 0 0 chrX 105005860 105005927 -71968213 + L1MA3 LINE L1 6031 6097 -208 6325 213 91 36 chrX 105005927 105006306 -71967834 - L1M4 LINE L1 -1021 5125 4768 2133 132 0 0 chrX 105006306 105006602 -71967538 - AluSx SINE Alu -16 296 1 6325 213 91 36 chrX 105006602 105007798 -71966342 - L1M4 LINE L1 -1378 4768 3400 2263 105 7 0 chrX 105007798 105008092 -71966048 - AluSx SINE Alu -14 298 3 6325 213 91 36 chrX 105008092 105008645 -71965495 - L1M4 LINE L1 -2746 3400 2879 349 269 157 35 chrX 105008720 105008892 -71965248 - MIR SINE MIR -44 218 28 310 171 23 33 chrX 105009005 105009073 -71965067 - L1ME LINE L1 -682 5439 5376 2112 153 42 14 chrX 105009073 105009426 -71964714 + THE1B LTR MaLR 1 363 -1 310 171 23 33 chrX 105009426 105009492 -71964648 - L1ME LINE L1 -745 5376 5311 1806 222 31 90 chrX 105010020 105010609 -71963531 - MLT2B3 LTR ERVL 0 554 1 320 222 130 46 chrX 105010631 105010739 -71963401 + L2 LINE L2 3197 3313 0 10469 200 13 3 chrX 105010952 105011306 -71962834 - L1 LINE L1 -1379 4767 4418 486 0 0 0 chrX 105011306 105011360 -71962780 + (TTTTA)n Simple_repeat Simple_repeat 4 57 0 10469 200 13 3 chrX 105011360 105013277 -71960863 - L1 LINE L1 -1728 4418 2472 1440 197 20 0 chrX 105013278 105013577 -71960563 + L1PB1 LINE L1 4769 5073 -1073 4565 61 33 48 chrX 105013577 105014632 -71959508 - MER11A LTR ERVK 0 1266 1 2906 102 68 60 chrX 105014632 105015340 -71958800 + L1PB1 LINE L1 5068 5775 -376 222 91 0 0 chrX 105015343 105015376 -71958764 + (TAGA)n Simple_repeat Simple_repeat 4 36 0 272 176 15 0 chrX 105015389 105015457 -71958683 + (TA)n Simple_repeat Simple_repeat 2 70 0 2287 125 19 8 chrX 105015460 105015828 -71958312 + L1PB1 LINE L1 5777 6148 -3 452 262 188 20 chrX 105015857 105016006 -71958134 + MIR SINE MIR 38 211 -51 1789 181 0 0 chrX 105016384 105016682 -71957458 + AluJb SINE Alu 3 300 -12 851 158 51 6 chrX 105017258 105017416 -71956724 - MER20 DNA MER1_type -48 171 7 615 263 45 53 chrX 105017665 105017912 -71956228 + MIR SINE MIR 18 262 0 230 296 0 0 chrX 105017913 105017967 -71956173 + (CAT)n Simple_repeat Simple_repeat 3 56 0 285 125 0 0 chrX 105020807 105020863 -71953277 + (T)n Simple_repeat Simple_repeat 1 56 0 340 300 24 45 chrX 105021362 105021609 -71952531 - HAL1 LINE L1 -841 1666 1425 519 299 52 75 chrX 105021700 105022221 -71951919 - L1MEd LINE L1 -4926 1193 685 197 0 0 67 chrX 105022244 105022274 -71951866 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 610 351 56 15 chrX 105022851 105023119 -71951021 + L3b LINE CR1 1279 1557 -26 32 26 0 0 chrX 105023971 105024010 -71950130 + AT_rich Low_complexity Low_complexity 1 39 0 2989 146 35 23 chrX 105025385 105025960 -71948180 - L1MB5 LINE L1 -8 6166 5585 1835 109 8 16 chrX 105026592 105026848 -71947292 + AluSc SINE Alu 2 255 -54 3856 139 8 2 chrX 105026848 105027466 -71946674 - L1MA5 LINE L1 -318 5982 5361 270 289 24 0 chrX 105027467 105027550 -71946590 + MER103 DNA DNA 76 160 -6 501 318 41 12 chrX 105027739 105027909 -71946231 - MER5A DNA MER1_type -1 188 14 26 30 0 0 chrX 105029798 105029831 -71944309 + AT_rich Low_complexity Low_complexity 1 33 0 227 221 0 13 chrX 105029875 105029952 -71944188 + CT-rich Low_complexity Low_complexity 2 77 0 1799 117 110 0 chrX 105029974 105030283 -71943857 - L1MB3 LINE L1 -9 6174 5832 472 273 110 35 chrX 105030732 105030959 -71943181 + L3b LINE CR1 1145 1388 -195 284 204 10 51 chrX 105031019 105031117 -71943023 + L1ME3A LINE L1 5869 5962 -202 337 207 141 33 chrX 105031214 105031335 -71942805 + L1ME3A LINE L1 6021 6154 -16 243 0 0 0 chrX 105031522 105031549 -71942591 + (TG)n Simple_repeat Simple_repeat 2 28 0 287 285 44 69 chrX 105031906 105032104 -71942036 + MIR SINE MIR 22 220 -42 495 249 76 28 chrX 105032861 105033039 -71941101 + MER20B DNA MER1_type 31 219 0 260 269 110 99 chrX 105033140 105033523 -71940617 - L2 LINE L2 -4 3268 2882 341 43 21 0 chrX 105033950 105033997 -71940143 + (TG)n Simple_repeat Simple_repeat 1 48 0 547 234 8 0 chrX 105034013 105034137 -71940003 + MIR SINE MIR 138 262 0 212 189 19 19 chrX 105035203 105035256 -71938884 + (CTTTG)n Simple_repeat Simple_repeat 1 53 0 1139 205 5 9 chrX 105035760 105035970 -71938170 + MER3 DNA MER1_type 1 209 0 334 352 45 11 chrX 105036082 105036258 -71937882 - MIR3 SINE MIR -2 206 25 914 225 28 0 chrX 105037946 105038124 -71936016 - MER58A DNA MER1_type -15 209 27 1213 248 84 21 chrX 105038339 105038718 -71935422 - MLT1I LTR MaLR -6 403 1 1090 263 92 22 chrX 105039269 105039669 -71934471 - MLT1J2 LTR MaLR -3 447 20 2262 72 7 0 chrX 105040204 105040481 -71933659 - AluY SINE Alu -15 296 18 1125 140 38 5 chrX 105040912 105041098 -71933042 - MER20 DNA MER1_type -27 192 1 512 188 0 10 chrX 105041438 105041534 -71932606 - MER5A DNA MER1_type -86 103 9 307 294 20 62 chrX 105042013 105042159 -71931981 + MIR SINE MIR 117 256 -6 193 348 11 11 chrX 105043120 105043212 -71930928 + L2 LINE L2 2687 2778 -536 297 238 159 24 chrX 105043606 105043732 -71930408 + MER103 DNA DNA 24 166 0 310 260 167 0 chrX 105044323 105044419 -71929721 + MIR SINE MIR 38 149 -59 2214 87 0 69 chrX 105045001 105045333 -71928807 - AluSq SINE Alu -4 309 1 3500 163 60 42 chrX 105046959 105047690 -71926450 - L1MB7 LINE L1 -9 6175 5432 888 171 0 0 chrX 105048231 105048383 -71925757 + FRAM SINE Alu 20 171 -5 731 228 41 15 chrX 105049008 105049205 -71924935 - MIR SINE MIR -12 250 49 191 250 25 0 chrX 105049239 105049279 -71924861 - MER5A DNA MER1_type -99 90 50 2051 108 37 7 chrX 105049808 105050105 -71924035 - AluSq SINE Alu -7 306 1 192 77 0 0 chrX 105050630 105050656 -71923484 + (TATATG)n Simple_repeat Simple_repeat 2 27 0 2054 232 116 27 chrX 105050712 105051463 -71922677 - L1MC4a LINE L1 -1733 6075 5258 245 281 22 11 chrX 105051732 105051821 -71922319 - L3b LINE CR1 -172 1411 1322 2155 194 3 8 chrX 105052391 105052758 -71921382 - MLT1A1 LTR MaLR 0 365 1 250 309 32 32 chrX 105054167 105054261 -71919879 - MIR SINE MIR -78 130 37 221 325 25 25 chrX 105054286 105054366 -71919774 + MIR SINE MIR 23 102 -106 735 286 42 8 chrX 105055348 105055589 -71918551 + MIR SINE MIR 11 259 -3 186 143 0 0 chrX 105055593 105055628 -71918512 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2402 56 0 3 chrX 105055670 105055990 -71918150 - AluY SINE Alu 0 319 1 359 306 19 31 chrX 105056196 105056356 -71917784 + MIR SINE MIR 49 206 -56 207 306 35 62 chrX 105056483 105056627 -71917513 - L2 LINE L2 -219 3053 2914 2020 116 7 0 chrX 105056662 105056954 -71917186 + AluSx SINE Alu 1 294 -18 439 248 26 17 chrX 105057064 105057181 -71916959 + L2 LINE L2 3177 3294 -19 408 40 0 0 chrX 105057198 105057248 -71916892 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 336 364 62 11 chrX 105058182 105058358 -71915782 + L3b LINE CR1 1311 1495 -88 240 267 50 0 chrX 105059846 105059906 -71914234 - L2 LINE L2 -4 3309 3247 443 263 158 13 chrX 105059944 105060096 -71914044 - MER91B DNA MER1_type -10 180 7 * 1160 297 76 30 chrX 105060088 105060749 -71913391 - L2 LINE L2 -67 3246 2564 727 280 103 0 chrX 105060731 105060945 -71913195 + MIR SINE MIR 12 247 -15 * 258 170 0 0 chrX 105060980 105061027 -71913113 - MER5B DNA MER1_type -2 176 130 276 83 0 0 chrX 105061050 105061086 -71913054 + MER5B DNA MER1_type 143 178 0 1124 226 12 16 chrX 105061215 105061463 -71912677 - MIR SINE MIR -8 254 8 766 232 10 41 chrX 105061657 105061851 -71912289 - MER5A DNA MER1_type 0 189 2 246 308 22 22 chrX 105062130 105062221 -71911919 + L2 LINE L2 2946 3036 -236 189 332 58 113 chrX 105062277 105062605 -71911535 + L2 LINE L2 2945 3254 -18 514 331 39 16 chrX 105063304 105063558 -71910582 + MIR SINE MIR 2 261 -1 373 366 43 4 chrX 105063733 105063968 -71910172 - L3b LINE CR1 -236 1347 1104 1659 94 0 0 chrX 105064459 105064682 -71909458 - L1PA14 LINE L1 -262 5899 5677 995 144 12 2 chrX 105064690 105064899 -71909241 + L1PA14 LINE L1 5900 6140 -14 1013 224 47 9 chrX 105065146 105065378 -71908762 - MIR SINE MIR -21 241 1 503 279 62 8 chrX 105065579 105065708 -71908432 - L2 LINE L2 -1 3271 3136 1772 142 30 0 chrX 105066091 105066359 -71907781 - AluJo SINE Alu -23 289 14 384 148 0 0 chrX 105067474 105067535 -71906605 - L1MB1 LINE L1 -116 6052 5992 765 114 32 16 chrX 105067535 105067657 -71906483 + L1MB1 LINE L1 6043 6167 -1 1734 163 66 30 chrX 105067722 105068054 -71906086 - MER2 DNA MER2_type 0 344 1 2008 127 25 0 chrX 105068950 105069234 -71904906 - AluSx SINE Alu -19 293 3 267 31 0 0 chrX 105069553 105069585 -71904555 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1276 209 52 4 chrX 105069725 105069974 -71904166 - MIR SINE MIR 0 262 2 5679 70 6 1 chrX 105070485 105071688 -71902452 - L1PA7 LINE L1 -328 5826 4620 222 149 43 21 chrX 105073101 105073195 -71900945 + (TA)n Simple_repeat Simple_repeat 1 96 0 1250 142 46 5 chrX 105073195 105073392 -71900748 - MER46A DNA MER2_type 0 236 32 212 132 11 77 chrX 105073413 105073504 -71900636 + (TA)n Simple_repeat Simple_repeat 1 85 0 350 140 18 0 chrX 105073518 105073575 -71900565 - L1P LINE L1 -1254 4892 4835 285 182 0 0 chrX 105073581 105073636 -71900504 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 229 167 0 0 chrX 105073636 105073684 -71900456 - LTR66 LTR ERVL -171 439 392 21 89 0 0 chrX 105074623 105074679 -71899461 + AT_rich Low_complexity Low_complexity 1 56 0 1798 76 0 0 chrX 105074686 105074909 -71899231 - L1MA1 LINE L1 -7 6295 6073 210 167 71 0 chrX 105074958 105075000 -71899140 + CT-rich Low_complexity Low_complexity 4 48 0 224 264 38 0 chrX 105075646 105075699 -71898441 - L2 LINE L2 -8 3264 3210 976 215 11 5 chrX 105075707 105075893 -71898247 - MER5A DNA MER1_type -2 187 1 847 215 81 27 chrX 105076018 105076279 -71897861 - L2 LINE L2 0 3313 3039 416 246 66 16 chrX 105076286 105076408 -71897732 - L2 LINE L2 -6 3307 3180 * 417 360 30 6 chrX 105076399 105076563 -71897577 + MIR3 SINE MIR 34 201 -7 223 100 50 0 chrX 105076832 105076872 -71897268 - L2 LINE L2 -557 2757 2716 1831 161 0 0 chrX 105077147 105077426 -71896714 - AluJb SINE Alu -32 280 2 626 226 108 46 chrX 105079056 105079478 -71894662 + L1MC4a LINE L1 5668 6110 -11 259 174 0 0 chrX 105080541 105080587 -71893553 + L2 LINE L2 3265 3310 -3 621 27 0 0 chrX 105081069 105081144 -71892996 + (TG)n Simple_repeat Simple_repeat 1 75 0 964 88 14 27 chrX 105081474 105081622 -71892518 - L1MD1 LINE L1 0 6242 6097 834 237 6 0 chrX 105082111 105082280 -71891860 + MER5B DNA MER1_type 1 170 -8 186 246 0 0 chrX 105082401 105082462 -71891678 + CT-rich Low_complexity Low_complexity 3 63 0 244 333 13 0 chrX 105082496 105082571 -71891569 + MIR3 SINE MIR 85 160 -48 521 237 59 17 chrX 105083588 105083706 -71890434 - L2 LINE L2 -1 3312 3190 21 36 0 0 chrX 105084425 105084453 -71889687 + AT_rich Low_complexity Low_complexity 1 28 0 240 304 33 11 chrX 105085183 105085275 -71888865 - MER5A DNA MER1_type -1 188 95 1576 157 39 52 chrX 105085311 105085616 -71888524 + AluJo SINE Alu 3 303 -9 1723 145 7 21 chrX 105087748 105088031 -71886109 - AluJb SINE Alu -33 279 1 186 198 123 66 chrX 105088123 105088229 -71885911 - L2 LINE L2 -1319 1995 1884 2430 48 0 10 chrX 105088611 105088904 -71885236 + AluY SINE Alu 1 290 -21 984 108 0 2 chrX 105088904 105089420 -71884720 + (TA)n Simple_repeat Simple_repeat 1 514 0 324 300 0 0 chrX 105089425 105089515 -71884625 + L1MC4 LINE L1 6614 6703 -1339 216 86 0 0 chrX 105089527 105089562 -71884578 + (TA)n Simple_repeat Simple_repeat 2 36 0 1550 180 28 21 chrX 105089562 105089845 -71884295 + AluJb SINE Alu 1 285 -27 450 36 0 0 chrX 105089845 105089901 -71884239 + (TA)n Simple_repeat Simple_repeat 2 57 0 436 306 57 0 chrX 105090761 105090918 -71883222 + MIR3 SINE MIR 42 207 -1 334 322 59 17 chrX 105090925 105091043 -71883097 - MIR SINE MIR -67 141 19 635 272 56 11 chrX 105091147 105091327 -71882813 + MIR3 SINE MIR 20 207 -1 811 209 35 0 chrX 105091522 105091694 -71882446 - MER5B DNA MER1_type 0 178 1 603 207 179 6 chrX 105091721 105091876 -71882264 + MER5A DNA MER1_type 4 189 0 1338 105 202 43 chrX 105092055 105092313 -71881827 - AluSc SINE Alu 0 299 1 1708 142 23 42 chrX 105092762 105093072 -71881068 + AluJb SINE Alu 1 304 -8 1340 245 30 39 chrX 105093082 105093396 -71880744 + L1ME4a LINE L1 5628 5938 -183 1941 141 7 20 chrX 105093396 105093701 -71880439 + AluJb SINE Alu 1 301 -11 1340 245 30 39 chrX 105093701 105093880 -71880260 + L1ME4a LINE L1 5938 6117 -4 881 267 76 25 chrX 105094212 105094527 -71879613 - L2 LINE L2 -2 3311 2981 2145 136 41 103 chrX 105094875 105095362 -71878778 - LTR32 LTR ERVL 0 471 15 778 197 6 66 chrX 105097726 105097909 -71876231 - MER5B DNA MER1_type -1 177 6 583 319 11 5 chrX 105098295 105098483 -71875657 - MER5A DNA MER1_type 0 189 1 327 362 137 29 chrX 105100727 105101216 -71872924 - L2 LINE L2 -487 2827 2286 290 153 17 0 chrX 105103184 105103243 -71870897 + CT-rich Low_complexity Low_complexity 2 61 0 342 107 0 0 chrX 105103243 105103299 -71870841 + (CA)n Simple_repeat Simple_repeat 1 56 0 432 0 0 0 chrX 105104453 105104501 -71869639 + (TG)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chrX 105105065 105105094 -71869046 + AT_rich Low_complexity Low_complexity 1 29 0 605 282 141 36 chrX 105105211 105105431 -71868709 + MIR SINE MIR 1 243 -19 823 283 74 37 chrX 105105685 105106088 -71868052 - L2 LINE L2 -1281 2033 1616 919 253 70 70 chrX 105106528 105106692 -71867448 + MER34 LTR ERV1 1 164 -378 2264 131 98 18 chrX 105106692 105107088 -71867052 + MSTA LTR MaLR 1 428 0 919 253 70 70 chrX 105107088 105107172 -71866968 + MER34 LTR ERV1 164 247 -295 2463 135 48 7 chrX 105107172 105107587 -71866553 + MSTB1 LTR MaLR 1 432 0 919 253 70 70 chrX 105107587 105107879 -71866261 + MER34 LTR ERV1 246 542 0 259 353 127 17 chrX 105108485 105108658 -71865482 + L2 LINE L2 2870 3061 -211 248 312 95 56 chrX 105108674 105108905 -71865235 + L2 LINE L2 2851 3090 -182 389 284 64 21 chrX 105108917 105109058 -71865082 - MIR SINE MIR 0 262 116 191 304 22 0 chrX 105109154 105109200 -71864940 + L2 LINE L2 3221 3267 -5 25 51 0 0 chrX 105109570 105109609 -71864531 + AT_rich Low_complexity Low_complexity 1 39 0 1107 155 5 50 chrX 105109639 105109839 -71864301 + AluJo SINE Alu 92 282 -30 537 30 0 0 chrX 105109839 105109906 -71864234 + (TA)n Simple_repeat Simple_repeat 1 67 0 524 259 67 0 chrX 105111349 105111484 -71862656 + MIR SINE MIR 107 250 -12 1593 171 72 10 chrX 105111500 105111792 -71862348 + AluJo SINE Alu 1 310 -2 267 283 61 89 chrX 105112087 105112267 -71861873 + L3 LINE CR1 829 1003 -574 744 285 24 68 chrX 105112271 105112566 -71861574 - L2 LINE L2 -1 3271 2990 728 179 26 6 chrX 105112911 105113067 -71861073 - MER97a DNA MER1_type? -717 177 19 535 148 10 0 chrX 105115094 105115195 -71858945 + L1MB7 LINE L1 6083 6184 0 249 247 183 0 chrX 105115412 105115505 -71858635 + MIR SINE MIR 13 122 -140 359 194 42 163 chrX 105115560 105115915 -71858225 - L1ME LINE L1 -3261 2819 2508 * 34736 96 8 8 chrX 105115909 105122053 -71852087 - L1PA6 LINE L1 -1 6153 11 1325 203 57 21 chrX 105122061 105122334 -71851806 - L1ME LINE L1 -3532 2548 2253 11186 123 11 17 chrX 105122334 105124960 -71849180 - L1PA10 LINE L1 0 6168 3561 1325 203 57 21 chrX 105124960 105125110 -71849030 - L1ME LINE L1 -3827 2253 2110 4820 141 27 24 chrX 105125110 105126885 -71847255 - L1MA7 LINE L1 -12 6279 4428 662 224 81 39 chrX 105126884 105127219 -71846921 - L1ME LINE L1 -3959 2121 1773 * 5783 131 13 4 chrX 105127247 105128170 -71845970 + Tigger1 DNA MER2_type 1 931 -1487 4482 155 18 19 chrX 105128183 105129274 -71844866 + L1PB4 LINE L1 5057 6142 -14 8249 133 30 11 chrX 105129290 105130700 -71843440 + Tigger1 DNA MER2_type 922 2357 -61 364 234 75 27 chrX 105130744 105130932 -71843208 - L1ME LINE L1 -4332 1748 1552 1910 263 79 31 chrX 105130939 105131454 -71842686 - L1ME LINE L1 -4822 1258 769 1910 191 3 21 chrX 105131454 105131826 -71842314 - MLT1A1 LTR MaLR 0 365 1 1910 263 79 31 chrX 105131826 105132358 -71841782 - L1ME LINE L1 -5311 769 154 1062 209 29 5 chrX 105132426 105132636 -71841504 - MER58A DNA MER1_type -8 216 2 4597 110 1 0 chrX 105132795 105133460 -71840680 + L1P LINE L1 2 667 -5479 189 0 0 0 chrX 105333567 105333588 -71640552 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 636 299 43 11 chrX 105333679 105333863 -71640277 - MIR3 SINE MIR -17 191 2 418 103 0 0 chrX 105333913 105333971 -71640169 + Ricksha DNA DNA 9 66 -1980 766 166 0 48 chrX 105333972 105334117 -71640023 + FLAM_C SINE Alu 2 139 -4 1346 116 27 12 chrX 105334118 105334376 -71639764 - Ricksha DNA DNA -61 2793 2532 2034 91 0 4 chrX 105334376 105334639 -71639501 + AluSq SINE Alu 37 298 -15 1477 159 0 59 chrX 105334644 105334747 -71639393 - Ricksha DNA DNA -382 2864 2756 186 43 0 0 chrX 105334747 105334770 -71639370 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1477 159 0 59 chrX 105334770 105334986 -71639154 - Ricksha DNA DNA -490 2756 2564 618 14 0 0 chrX 105334999 105335070 -71639070 + (TTTC)n Simple_repeat Simple_repeat 3 73 0 2419 200 5 25 chrX 105336669 105337260 -71636880 - L1M4 LINE L1 -1558 4588 4010 * 2623 244 48 25 chrX 105337253 105338001 -71636139 - L1MDa LINE L1 -4164 2557 1631 1604 130 19 10 chrX 105338001 105338308 -71635832 - L1MA4 LINE L1 -1 6299 5990 2623 244 48 25 chrX 105338308 105338704 -71635436 - L1MDa LINE L1 -5090 1631 1246 1831 190 8 14 chrX 105339086 105339455 -71634685 + MLT1A2 LTR MaLR 1 367 -7 325 342 59 71 chrX 105339747 105340085 -71634055 - L2 LINE L2 -221 3051 2710 4669 185 19 7 chrX 105340777 105341746 -71632394 - L1MD1 LINE L1 -9 6233 5254 1108 137 5 5 chrX 105341753 105341950 -71632190 - L1M2 LINE L1 -775 5516 5320 622 112 21 56 chrX 105341949 105342092 -71632048 + L1M LINE L1 5271 5408 -883 * 1802 231 63 66 chrX 105342114 105342762 -71631378 - L1MDa LINE L1 -5879 661 16 448 218 21 154 chrX 105343074 105343262 -71630878 + L2 LINE L2 3138 3300 -13 180 77 0 0 chrX 105343262 105343288 -71630852 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 406 345 42 12 chrX 105343289 105343457 -71630683 + MIR3 SINE MIR 33 205 -3 319 300 0 0 chrX 105343490 105343570 -71630570 + (TCCA)n Simple_repeat Simple_repeat 2 81 0 187 209 93 0 chrX 105343570 105343581 -71630559 - L2 LINE L2 0 3313 3267 206 156 0 0 chrX 105343581 105343613 -71630527 - MIR SINE MIR -9 253 222 314 270 40 141 chrX 105343753 105343871 -71630269 - L2 LINE L2 -248 3024 2938 2479 64 0 3 chrX 105343871 105344168 -71629972 + AluY SINE Alu 6 301 -10 314 270 40 141 chrX 105344168 105344300 -71629840 - L2 LINE L2 -334 2938 2794 797 284 30 13 chrX 105344843 105345075 -71629065 - MIR SINE MIR -26 236 1 569 165 0 152 chrX 105345177 105345341 -71628799 + L2 LINE L2 3175 3313 0 2211 129 22 8 chrX 105345829 105346193 -71627947 - THE1C LTR MaLR 0 375 7 4669 211 33 18 chrX 105346622 105346823 -71627317 - L1MD2 LINE L1 -3 6356 6159 300 27 0 0 chrX 105346823 105346860 -71627280 + (TG)n Simple_repeat Simple_repeat 2 38 0 4669 211 33 18 chrX 105346860 105347391 -71626749 - L1MD2 LINE L1 -200 6159 5637 1907 98 0 0 chrX 105347391 105347674 -71626466 - AluSx SINE Alu 0 329 47 4669 211 33 18 chrX 105347674 105348908 -71625232 - L1MD2 LINE L1 -722 5637 4357 5834 99 31 0 chrX 105348909 105349809 -71624331 + L1MA1 LINE L1 5366 6293 -9 315 104 0 0 chrX 105350466 105350514 -71623626 + (CA)n Simple_repeat Simple_repeat 2 49 0 2073 266 68 44 chrX 105351241 105352065 -71622075 + L2 LINE L2 1907 2750 -564 235 299 29 58 chrX 105352155 105352292 -71621848 + L2 LINE L2 3014 3146 -167 9363 58 2 2 chrX 105353774 105354983 -71619157 - HERVL LTR ERVL -1412 4242 3034 325 87 0 0 chrX 105354992 105355038 -71619102 - MLT2A2 LTR ERVL -405 48 3 837 268 4 31 chrX 105355087 105355315 -71618825 + MIR SINE MIR 7 228 -34 264 273 13 39 chrX 105356512 105356589 -71617551 + MIR SINE MIR 1 75 -187 501 249 134 53 chrX 105356790 105356954 -71617186 + MIR SINE MIR 11 197 -65 2531 42 3 3 chrX 105356954 105357265 -71616875 + AluY SINE Alu 1 311 0 501 249 134 53 chrX 105357265 105357309 -71616831 + MIR SINE MIR 197 236 -26 223 347 42 0 chrX 105357345 105357440 -71616700 - L3 LINE CR1 -344 1233 1135 199 261 0 0 chrX 105357944 105357990 -71616150 + L3 LINE CR1 708 753 -824 500 303 23 0 chrX 105358111 105358243 -71615897 + MIR SINE MIR 109 243 -19 294 333 0 11 chrX 105358297 105358384 -71615756 + L3 LINE CR1 1011 1096 -481 1140 163 18 9 chrX 105358473 105358694 -71615446 - L1MB3 LINE L1 -2 6181 5959 4291 181 36 14 chrX 105358699 105359538 -71614602 - L1MA10 LINE L1 0 6334 5472 198 0 0 0 chrX 105359538 105359560 -71614580 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 4291 181 36 14 chrX 105359560 105359633 -71614507 - L1MA10 LINE L1 -862 5472 5402 2428 90 0 0 chrX 105359636 105359947 -71614193 - AluY SINE Alu 0 311 1 2409 199 13 33 chrX 105359982 105360801 -71613339 - L1MB3 LINE L1 -1 6299 5513 286 189 0 0 chrX 105360813 105360866 -71613274 + Charlie8 DNA MER1_type 61 113 -2304 21 36 0 0 chrX 105360934 105360962 -71613178 + AT_rich Low_complexity Low_complexity 1 28 0 391 357 38 22 chrX 105362309 105362494 -71611646 + MIR SINE MIR 18 205 -57 1469 246 58 48 chrX 105364009 105364575 -71609565 + Charlie7 DNA MER1_type 111 682 -1930 4115 111 94 0 chrX 105365215 105365882 -71608258 - THE1C-int LTR MaLR -848 732 3 1983 133 53 19 chrX 105365886 105366247 -71607893 - THE1C LTR MaLR -2 373 1 884 270 48 18 chrX 105366247 105366636 -71607504 - MLT1K LTR MaLR -86 502 32 1585 184 0 48 chrX 105367295 105367610 -71606530 + AluJo SINE Alu 1 300 -12 456 358 108 31 chrX 105368512 105368937 -71605203 - L3b LINE CR1 -22 1561 1104 1901 133 11 0 chrX 105369165 105369488 -71604652 - AluSx SINE Alu 0 336 11 230 245 38 0 chrX 105369781 105369834 -71604306 - L2 LINE L2 -2 3270 3216 * 1009 286 0 4 chrX 105369804 105370035 -71604105 - MIR SINE MIR -21 241 12 463 304 22 22 chrX 105370507 105370642 -71603498 + MER5A DNA MER1_type 55 189 0 734 253 46 0 chrX 105370737 105370931 -71603209 + MER63A DNA MER1_type 1 203 -7 209 322 0 0 chrX 105371009 105371068 -71603072 - MIR SINE MIR -130 78 20 288 408 0 0 chrX 105371076 105371206 -71602934 + L2 LINE L2 2923 3052 -220 416 333 151 0 chrX 105371350 105371569 -71602571 + MIR SINE MIR 11 262 0 999 101 87 0 chrX 105371647 105371887 -71602253 + AluSg/x SINE Alu 135 386 0 2002 156 66 3 chrX 105373284 105373676 -71600464 - L1MA9 LINE L1 -24 6288 5872 303 294 0 0 chrX 105374038 105374106 -71600034 - L2 LINE L2 -2 3270 3203 804 218 123 14 chrX 105374123 105374334 -71599806 - MIR SINE MIR 0 262 29 697 110 94 0 chrX 105374416 105374543 -71599597 + MER30 DNA MER1_type 1 139 -91 7495 51 15 0 chrX 105374543 105375517 -71598623 - L1P LINE L1 -5151 995 7 7538 24 8 0 chrX 105375521 105376594 -71597546 + L1PA4 LINE L1 5076 6155 0 616 322 0 35 chrX 105376639 105376813 -71597327 - MIR SINE MIR -93 169 2 381 284 88 5 chrX 105377074 105377191 -71596949 + MIR SINE MIR 35 142 -66 401 314 58 29 chrX 105378523 105378695 -71595445 + MIR SINE MIR 73 249 -13 2357 74 0 3 chrX 105378769 105379055 -71595085 + AluY SINE Alu 1 287 -24 207 0 0 0 chrX 105379055 105379078 -71595062 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 405 306 33 0 chrX 105381080 105381201 -71592939 + MIR SINE MIR 66 190 -72 518 141 8 0 chrX 105381247 105381375 -71592765 + (TA)n Simple_repeat Simple_repeat 1 129 0 198 0 0 0 chrX 105432928 105432950 -71541190 + (A)n Simple_repeat Simple_repeat 1 22 0 271 367 7 29 chrX 105433365 105433504 -71540636 - L2 LINE L2 -1 3271 3136 361 129 0 0 chrX 105433526 105433588 -71540552 - L1MA9 LINE L1 -8 6304 6243 1406 63 0 5 chrX 105433621 105433811 -71540329 - L1MA3 LINE L1 0 6305 6117 1643 105 8 16 chrX 105433795 105434059 -71540081 - L1MA9 LINE L1 -49 6263 6003 344 256 12 0 chrX 105434728 105434814 -71539326 - MIR SINE MIR -43 219 133 867 238 18 36 chrX 105434989 105435135 -71539005 + MIR SINE MIR 31 173 -89 2488 54 3 0 chrX 105435135 105435430 -71538710 - AluY SINE Alu -15 296 1 867 238 18 36 chrX 105435430 105435506 -71538634 + MIR SINE MIR 173 249 -13 1056 238 58 11 chrX 105435561 105435816 -71538324 + MIR SINE MIR 2 262 0 761 250 52 73 chrX 105435804 105436052 -71538088 - MIR SINE MIR -19 243 1 * 879 284 70 0 chrX 105436752 105436995 -71537145 - MIR SINE MIR -1 261 2 211 194 0 0 chrX 105437045 105437081 -71537059 + CT-rich Low_complexity Low_complexity 1 36 0 486 328 28 0 chrX 105437327 105437507 -71536633 + MIR SINE MIR 12 196 -66 1674 183 7 4 chrX 105437532 105437811 -71536329 + AluJo SINE Alu 1 280 -32 483 261 19 6 chrX 105438268 105438429 -71535711 - MER103 DNA DNA -2 164 2 725 280 10 5 chrX 105439049 105439249 -71534891 + HAL1 LINE L1 526 726 -1781 * 1703 238 56 11 chrX 105439248 105439769 -71534371 + HAL1 LINE L1 53 596 -1911 760 233 40 91 chrX 105439781 105440154 -71533986 + LTR37B LTR ERV1 7 360 -108 680 201 35 7 chrX 105440206 105440350 -71533790 + HAL1 LINE L1 600 747 -1760 464 192 23 62 chrX 105440358 105440488 -71533652 + MER94 DNA DNA 1 125 -9 3469 249 79 44 chrX 105440497 105442061 -71532079 + HAL1 LINE L1 748 2365 -142 1852 142 7 0 chrX 105442062 105442351 -71531789 + L1PA16 LINE L1 5863 6153 -13 1773 185 0 19 chrX 105442360 105442673 -71531467 - AluJb SINE Alu -5 307 1 194 0 39 0 chrX 105442722 105442748 -71531392 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 5390 161 18 6 chrX 105442753 105444693 -71529447 - L1MA8 LINE L1 -13 6278 4319 230 269 21 32 chrX 105444725 105444818 -71529322 + HAL1 LINE L1 2407 2498 -9 445 273 17 8 chrX 105445094 105445219 -71528921 + MIR SINE MIR 33 157 -65 222 37 0 0 chrX 105445868 105445895 -71528245 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 187 146 36 0 chrX 105446034 105446089 -71528051 + (TA)n Simple_repeat Simple_repeat 1 57 0 485 240 0 10 chrX 105446183 105446283 -71527857 + MIR SINE MIR 43 141 -121 789 253 64 18 chrX 105447488 105447769 -71526371 + L2 LINE L2 2097 2390 -924 * 1655 291 63 22 chrX 105447767 105448529 -71525611 - L2 LINE L2 -31 3282 2495 398 256 23 45 chrX 105448509 105448642 -71525498 + L2 LINE L2 2397 2526 -788 * 502 273 50 40 chrX 105448851 105449049 -71525091 + L2 LINE L2 3114 3313 0 359 261 113 9 chrX 105449379 105449494 -71524646 - L2 LINE L2 -4 3309 3183 448 344 46 5 chrX 105449817 105450012 -71524128 - LTR16B LTR ERVL -261 203 1 784 261 39 5 chrX 105450450 105450653 -71523487 - MLT1I LTR MaLR 0 409 200 399 206 0 0 chrX 105450842 105450915 -71523225 + L2 LINE L2 3241 3313 0 704 243 84 13 chrX 105451354 105451580 -71522560 + MIR SINE MIR 21 262 0 200 309 15 29 chrX 105451564 105451632 -71522508 - MIR SINE MIR 0 262 196 * 218 103 0 26 chrX 105451636 105451675 -71522465 + (TG)n Simple_repeat Simple_repeat 2 39 0 868 230 19 43 chrX 105451687 105451896 -71522244 - MIR SINE MIR -58 204 1 237 313 67 56 chrX 105452444 105452639 -71521501 + MIR SINE MIR 2 198 -64 222 288 0 17 chrX 105452775 105452834 -71521306 - MIR SINE MIR -135 127 70 417 39 0 0 chrX 105453246 105453297 -71520843 + (CA)n Simple_repeat Simple_repeat 2 52 0 2311 65 10 0 chrX 105453482 105453773 -71520367 - AluY SINE Alu -17 294 1 29 70 0 0 chrX 105454688 105454745 -71519395 + AT_rich Low_complexity Low_complexity 1 57 0 2008 133 3 11 chrX 105456193 105456513 -71517627 + AluSx SINE Alu 1 318 0 2489 66 0 25 chrX 105458477 105458795 -71515345 - AluY SINE Alu -1 310 1 2204 115 87 20 chrX 105459141 105459531 -71514609 - MSTA LTR MaLR -12 416 1 189 107 0 0 chrX 105459890 105459918 -71514222 + (TTGG)n Simple_repeat Simple_repeat 4 31 0 443 228 134 34 chrX 105459927 105460076 -71514064 + MIR SINE MIR 6 169 -93 330 213 53 0 chrX 105460092 105460167 -71513973 - MIR SINE MIR -5 257 179 185 250 25 0 chrX 105460195 105460235 -71513905 + MIR SINE MIR 220 260 -2 480 155 0 0 chrX 105461284 105461368 -71512772 + L1MB2 LINE L1 6081 6164 -7 202 94 0 31 chrX 105461778 105461810 -71512330 + (CA)n Simple_repeat Simple_repeat 2 32 0 309 89 0 0 chrX 105461966 105462011 -71512129 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 503 246 30 18 chrX 105462039 105462206 -71511934 - L1MC4a LINE L1 -1913 5895 5727 455 353 94 16 chrX 105462212 105462583 -71511557 + L1ME4a LINE L1 5718 6117 -4 816 264 54 21 chrX 105463082 105463324 -71510816 + MIR SINE MIR 13 262 0 1592 185 17 13 chrX 105463559 105463857 -71510283 + AluJb SINE Alu 1 299 -13 2273 88 7 3 chrX 105463857 105464154 -71509986 + AluY SINE Alu 1 298 -13 332 237 100 45 chrX 105464165 105464307 -71509833 + MIR SINE MIR 30 176 -62 424 205 9 9 chrX 105464310 105464422 -71509718 - L1PB4 LINE L1 -11 6145 6034 324 180 33 0 chrX 105464423 105464484 -71509656 - L1PB4 LINE L1 -82 6074 6012 242 247 65 39 chrX 105464486 105464563 -71509577 + MIR SINE MIR 167 245 -17 * 429 295 9 9 chrX 105464562 105464674 -71509466 - L2 LINE L2 -1 3271 3160 2895 40 0 0 chrX 105465303 105465649 -71508491 + L1PA3 LINE L1 5810 6155 0 29 47 0 0 chrX 105465649 105465692 -71508448 + AT_rich Low_complexity Low_complexity 1 43 0 306 115 0 0 chrX 105466175 105466227 -71507913 + (TG)n Simple_repeat Simple_repeat 1 52 0 294 220 114 23 chrX 105466380 105466512 -71507628 - MER103 DNA DNA 0 166 23 234 0 0 0 chrX 105466518 105466544 -71507596 + (T)n Simple_repeat Simple_repeat 1 26 0 1035 97 103 0 chrX 105467047 105467202 -71506938 - AluSc SINE Alu -7 302 132 2235 82 0 14 chrX 105467202 105467542 -71506598 - AluY SINE Alu 0 311 1 266 297 135 40 chrX 105467726 105467874 -71506266 + MIR3 SINE MIR 37 198 -10 702 256 52 11 chrX 105468272 105468463 -71505677 - MIR SINE MIR -56 206 8 772 282 48 5 chrX 105469039 105469284 -71504856 - MIR SINE MIR -1 261 8 385 228 18 44 chrX 105469775 105469889 -71504251 - MIR SINE MIR -69 193 83 1700 198 23 11 chrX 105470988 105471341 -71502799 - MLT1A2 LTR MaLR -17 357 1 1516 170 32 0 chrX 105471376 105471629 -71502511 - AluJb SINE Alu -21 291 31 331 303 0 0 chrX 105471644 105471733 -71502407 - L1MC4 LINE L1 -1339 6703 6615 317 322 0 0 chrX 105471656 105471746 -71502394 + L1MC4 LINE L1 6614 6703 -1339 * 195 250 0 0 chrX 105471748 105471800 -71502340 + (TA)n Simple_repeat Simple_repeat 2 53 0 787 207 0 0 chrX 105471800 105471940 -71502200 + AluJb SINE Alu 150 289 -23 1089 231 30 15 chrX 105471977 105472246 -71501894 + MLT1A2 LTR MaLR 1 273 -101 700 99 54 0 chrX 105472248 105472580 -71501560 + (TA)n Simple_repeat Simple_repeat 1 350 0 231 172 0 31 chrX 105472582 105472646 -71501494 + (TATAA)n Simple_repeat Simple_repeat 2 63 0 410 122 68 0 chrX 105472646 105472794 -71501346 + (TA)n Simple_repeat Simple_repeat 1 158 0 215 264 80 72 chrX 105473090 105473215 -71500925 + MIR3 SINE MIR 11 136 -72 481 297 144 20 chrX 105474006 105474201 -71499939 + MIR SINE MIR 1 219 -43 180 0 0 0 chrX 105475164 105475184 -71498956 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 457 280 34 0 chrX 105475284 105475402 -71498738 - MIR SINE MIR -60 202 81 375 73 0 0 chrX 105475486 105475541 -71498599 + (TC)n Simple_repeat Simple_repeat 1 55 0 254 106 0 85 chrX 105476011 105476058 -71498082 - MIR SINE MIR -131 131 89 519 308 33 45 chrX 105477666 105478078 -71496062 - L1P3 LINE L1 -347 5807 5400 559 275 25 0 chrX 105478225 105478345 -71495795 + MIR3 SINE MIR 78 200 -8 617 215 8 0 chrX 105478345 105478475 -71495665 + L1PB4 LINE L1 6026 6156 0 1347 99 0 0 chrX 105479010 105479181 -71494959 + AluSg/x SINE Alu 74 244 -68 639 277 77 9 chrX 105479540 105479760 -71494380 - MIR SINE MIR -26 236 2 417 306 82 6 chrX 105480130 105480300 -71493840 + L2 LINE L2 3014 3196 -117 1293 252 22 6 chrX 105481370 105481731 -71492409 - L1ME2 LINE L1 -9 6155 5789 2437 87 0 0 chrX 105483134 105483490 -71490650 + AluSc SINE Alu 1 356 0 289 269 172 20 chrX 105483490 105483692 -71490448 - MIR SINE MIR 0 262 30 237 186 17 0 chrX 105483754 105483813 -71490327 + L1MA5 LINE L1 6216 6275 -25 743 275 135 38 chrX 105484664 105485255 -71488885 - L1MC4a LINE L1 -541 5818 5266 1712 168 14 7 chrX 105485340 105485666 -71488474 - AluJb SINE Alu 0 330 3 1780 198 26 11 chrX 105485802 105486180 -71487960 - L1MB7 LINE L1 -16 6404 6021 805 219 5 19 chrX 105486180 105486390 -71487750 - L1MB7 LINE L1 -953 5429 5223 * 971 223 260 18 chrX 105486378 105486836 -71487304 - L1MB7 LINE L1 -3034 3348 2780 * 8786 42 9 1 chrX 105486833 105488054 -71486086 + L1P2 LINE L1 4296 5529 -625 * 42431 36 22 2 chrX 105488024 105494049 -71480091 + L1PA3 LINE L1 6 6154 -1 5446 49 4 0 chrX 105494049 105494719 -71479421 + L1PA4 LINE L1 5476 6153 -2 796 246 79 0 chrX 105494719 105494962 -71479178 - L1MB7 LINE L1 -3585 2797 2532 225 0 0 0 chrX 105494962 105494987 -71479153 + (TG)n Simple_repeat Simple_repeat 1 25 0 1416 178 44 3 chrX 105495077 105495370 -71478770 + L1MA9 LINE L1 5962 6266 -46 803 197 13 0 chrX 105495370 105495522 -71478618 - MER46A DNA MER2_type 0 236 83 5569 89 10 4 chrX 105495543 105496338 -71477802 - L1MA1 LINE L1 -8 6294 5495 555 190 0 10 chrX 105496338 105496438 -71477702 - MER46A DNA MER2_type -137 99 1 301 231 0 66 chrX 105496369 105496460 -71477680 + MER46A DNA MER2_type 78 162 -74 * 922 248 56 3 chrX 105496474 105496833 -71477307 - L1MB7 LINE L1 -3900 2484 2107 486 301 105 19 chrX 105497317 105497583 -71476557 - L1M4 LINE L1 -3005 3141 2853 230 49 0 49 chrX 105497689 105497730 -71476410 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1560 53 0 5 chrX 105497732 105497921 -71476219 - AluY SINE Alu -23 288 101 378 156 15 0 chrX 105497923 105498018 -71476122 - Alu SINE Alu -258 50 1 816 199 66 5 chrX 105498453 105498649 -71475491 - MER3 DNA MER1_type 0 209 2 1182 266 53 0 chrX 105498658 105498981 -71475159 - MER58B DNA MER1_type 0 341 2 2139 115 3 7 chrX 105499155 105499460 -71474680 - AluSx SINE Alu -7 305 2 25 0 0 0 chrX 105500443 105500468 -71473672 + AT_rich Low_complexity Low_complexity 1 25 0 207 296 204 35 chrX 105500485 105500627 -71473513 - MIR3 SINE MIR -37 171 6 544 294 0 0 chrX 105501135 105501261 -71472879 + MER94 DNA DNA 3 128 -6 1159 206 0 0 chrX 105501699 105501893 -71472247 - MER58A DNA MER1_type -30 194 1 23 33 0 0 chrX 105501973 105502003 -71472137 + AT_rich Low_complexity Low_complexity 1 30 0 2079 138 0 3 chrX 105502598 105502895 -71471245 - AluSx SINE Alu -15 297 2 730 234 6 40 chrX 105504134 105504309 -71469831 - MER5B DNA MER1_type -6 172 4 424 274 204 0 chrX 105504316 105504473 -71469667 - L3 LINE CR1 -5 1572 1384 2138 91 0 34 chrX 105504698 105504995 -71469145 + AluSg SINE Alu 1 287 -23 603 166 72 14 chrX 105505388 105505527 -71468613 + MER103 DNA DNA 3 149 -17 257 167 0 0 chrX 105505982 105506024 -71468116 - L2 LINE L2 -4 3309 3268 2302 122 119 10 chrX 105506180 105506566 -71467574 - MSTA LTR MaLR 0 428 1 2281 149 22 0 chrX 105506636 105506992 -71467148 - THE1B LTR MaLR 0 364 1 241 347 34 14 chrX 105607821 105607968 -71366172 + L2 LINE L2 2127 2276 -1038 886 214 6 0 chrX 105608404 105608577 -71365563 + MER5B DNA MER1_type 1 174 -4 2070 66 8 12 chrX 105608830 105609087 -71365053 + AluSg SINE Alu 29 284 -26 213 65 0 0 chrX 105609090 105609121 -71365019 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2277 86 0 20 chrX 105609479 105609783 -71364357 - AluY SINE Alu -13 298 1 663 243 99 27 chrX 105610187 105610409 -71363731 + MIR SINE MIR 17 254 -8 2189 125 0 3 chrX 105610439 105610743 -71363397 + AluSx SINE Alu 1 303 -9 1446 249 40 43 chrX 105610832 105611319 -71362821 - L1MC3 LINE L1 0 8041 7572 1147 229 33 0 chrX 105611366 105611611 -71362529 + MIR SINE MIR 8 260 -2 486 0 0 0 chrX 105611855 105611909 -71362231 + (CA)n Simple_repeat Simple_repeat 2 55 0 1412 236 181 25 chrX 105611910 105612346 -71361794 + MLT1D LTR MaLR 2 505 0 1679 180 57 86 chrX 105612971 105613448 -71360692 + MLT1C LTR MaLR 4 466 -1 283 238 50 25 chrX 105613464 105613544 -71360596 - L2 LINE L2 -8 3264 3183 471 265 7 30 chrX 105614409 105614462 -71359678 - MIR3 SINE MIR -64 144 91 2565 29 0 48 chrX 105614462 105614773 -71359367 - AluY SINE Alu -15 296 1 471 265 7 30 chrX 105614773 105614924 -71359216 - MIR3 SINE MIR -117 91 2 241 325 31 99 chrX 105615766 105616058 -71358082 - L2 LINE L2 -81 3191 2920 1702 160 17 14 chrX 105616518 105616811 -71357329 - 7SLRNA srpRNA srpRNA -5 315 22 297 287 115 0 chrX 105616847 105616969 -71357171 - L2 LINE L2 -956 2358 2223 4093 131 96 76 chrX 105617274 105618239 -71355901 + pTR5 LTR ERV1 743 2032 -406 321 222 33 22 chrX 105618240 105618330 -71355810 + LTR30 LTR ERV1 552 642 -80 1615 90 0 9 chrX 105618333 105618556 -71355584 + pTR5 LTR ERV1 172 392 -2046 241 325 8 34 chrX 105618847 105618964 -71355176 + L2 LINE L2 2867 2980 -292 76 12 0 0 chrX 105619103 105619186 -71354954 + AT_rich Low_complexity Low_complexity 1 83 0 546 195 127 17 chrX 105620040 105620158 -71353982 - MER58C DNA MER1_type -1 214 84 261 0 0 0 chrX 105620162 105620191 -71353949 + (CA)n Simple_repeat Simple_repeat 2 30 0 321 233 12 23 chrX 105621338 105621424 -71352716 - MIR SINE MIR -110 152 68 32 0 0 0 chrX 105621685 105621717 -71352423 + AT_rich Low_complexity Low_complexity 1 32 0 1031 73 0 0 chrX 105621853 105621976 -71352164 + AluSg SINE Alu 1 123 -187 354 231 0 55 chrX 105622093 105622184 -71351956 - L2 LINE L2 -1 3271 3186 457 272 9 9 chrX 105623149 105623263 -71350877 + L2 LINE L2 3200 3313 0 239 271 102 42 chrX 105623261 105623379 -71350761 - MIR SINE MIR -130 132 8 * 260 250 0 18 chrX 105623737 105623793 -71350347 - L3 LINE CR1 -21 1556 1502 27 62 0 0 chrX 105623913 105623961 -71350179 + AT_rich Low_complexity Low_complexity 1 48 0 224 323 0 71 chrX 105624047 105624202 -71349938 - L2 LINE L2 -219 3053 2910 2353 94 3 3 chrX 105624487 105624786 -71349354 + AluSq SINE Alu 1 299 -14 355 294 159 8 chrX 105624896 105625022 -71349118 - MIR SINE MIR -71 191 47 571 299 55 9 chrX 105625211 105625428 -71348712 - MIR SINE MIR -16 246 20 242 54 0 27 chrX 105626354 105626391 -71347749 + (TG)n Simple_repeat Simple_repeat 1 36 0 468 193 61 18 chrX 105626949 105627063 -71347077 + Charlie8 DNA MER1_type 74 192 -2225 264 59 0 0 chrX 105627166 105627200 -71346940 + (TG)n Simple_repeat Simple_repeat 1 34 0 1849 133 23 0 chrX 105627200 105627508 -71346632 - L1MB4 LINE L1 -12 6168 5854 735 179 0 0 chrX 105628582 105628699 -71345441 - FLAM_A SINE Alu -18 124 8 268 292 32 39 chrX 105628710 105628864 -71345276 + L1MC/D LINE L1 5738 5890 -1918 983 99 7 0 chrX 105629040 105629181 -71344959 - AluSg/x SINE Alu 0 310 169 1862 122 4 0 chrX 105629181 105629435 -71344705 - AluSx SINE Alu -57 255 1 286 297 42 34 chrX 105630507 105630625 -71343515 - MIR SINE MIR -124 138 20 255 133 0 0 chrX 105632757 105632802 -71341338 + (TGG)n Simple_repeat Simple_repeat 3 47 0 212 306 82 12 chrX 105634167 105634252 -71339888 + L3b LINE CR1 1483 1573 -10 201 147 0 0 chrX 105635171 105635205 -71338935 + (A)n Simple_repeat Simple_repeat 1 34 0 2144 108 10 3 chrX 105636809 105637104 -71337036 + AluSq SINE Alu 1 297 -16 291 285 109 29 chrX 105637401 105637538 -71336602 + MIR SINE MIR 29 176 -86 231 298 38 103 chrX 105640153 105640363 -71333777 + MIR SINE MIR 21 212 -50 327 336 16 25 chrX 105640486 105640608 -71333532 - L2 LINE L2 -2 3270 3150 276 220 17 0 chrX 105640930 105640989 -71333151 + L2 LINE L2 2196 2255 -1059 316 270 126 9 chrX 105641155 105641200 -71332940 + L2 LINE L2 3140 3178 -94 306 0 0 0 chrX 105641200 105641234 -71332906 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 316 270 126 9 chrX 105641234 105641299 -71332841 + L2 LINE L2 3178 3263 -9 844 279 55 7 chrX 105642157 105642447 -71331693 + L1ME4a LINE L1 5600 5903 -218 314 176 141 0 chrX 105642480 105642565 -71331575 + L1ME4a LINE L1 5956 6052 -69 2366 124 138 5 chrX 105643110 105643488 -71330652 - MSTA LTR MaLR 0 428 1 288 278 67 33 chrX 105643971 105644061 -71330079 + MIR3 SINE MIR 106 198 -10 938 278 28 0 chrX 105644194 105644442 -71329698 - MIR SINE MIR 0 262 8 2177 128 3 0 chrX 105645522 105645828 -71328312 + AluSx SINE Alu 1 307 -5 245 237 42 102 chrX 105646809 105646927 -71327213 + L2 LINE L2 3193 3303 -10 219 242 0 0 chrX 105647621 105647683 -71326457 + (TG)n Simple_repeat Simple_repeat 1 62 0 247 259 12 35 chrX 105653399 105653484 -71320656 + (TG)n Simple_repeat Simple_repeat 1 83 0 326 330 9 0 chrX 105655440 105655555 -71318585 - MIR SINE MIR -132 130 15 549 272 89 28 chrX 105655923 105656103 -71318037 + MIR3 SINE MIR 10 200 -8 390 146 0 0 chrX 105657054 105657136 -71317004 + (CAG)n Simple_repeat Simple_repeat 1 82 0 2425 90 3 0 chrX 105658376 105658687 -71315453 - AluSp SINE Alu 0 313 2 311 294 85 40 chrX 105660217 105660394 -71313746 + L2 LINE L2 2701 2885 -429 317 328 48 75 chrX 105660422 105660757 -71313383 + L2 LINE L2 2946 3271 -1 2139 121 10 13 chrX 105661938 105662251 -71311889 - AluSx SINE Alu 0 312 1 239 315 22 22 chrX 105662264 105662356 -71311784 + MIR3 SINE MIR 111 202 -6 623 264 132 20 chrX 105664335 105664532 -71309608 + MIR SINE MIR 34 252 -10 3156 130 20 124 chrX 105665037 105665745 -71308395 - L1MCa LINE L1 -5367 1059 426 299 275 8 0 chrX 105666222 105666353 -71307787 + (TA)n Simple_repeat Simple_repeat 1 132 0 2185 82 13 30 chrX 105666391 105666694 -71307446 - AluSc SINE Alu -11 298 1 297 0 0 0 chrX 105667262 105667295 -71306845 + (TG)n Simple_repeat Simple_repeat 2 34 0 245 312 9 64 chrX 105667375 105667484 -71306656 - MIR SINE MIR -99 109 6 231 190 0 0 chrX 105668040 105668098 -71306042 + (TA)n Simple_repeat Simple_repeat 2 59 0 250 341 43 36 chrX 105669317 105669455 -71304685 - MIR3 SINE MIR -67 141 3 2170 106 10 6 chrX 105672371 105672714 -71301426 - AluSx SINE Alu 0 312 1 238 105 26 0 chrX 105673436 105673474 -71300666 - MER11C LTR ERVK -816 255 217 417 200 43 87 chrX 105674181 105674296 -71299844 + L2 LINE L2 3204 3313 0 202 292 0 0 chrX 105674666 105674714 -71299426 + L2 LINE L2 3263 3310 -3 415 149 26 26 chrX 105674741 105674855 -71299285 + CT-rich Low_complexity Low_complexity 3 116 0 2169 123 7 0 chrX 105674858 105675166 -71298974 - AluSx SINE Alu -2 310 1 264 154 0 0 chrX 105675237 105675289 -71298851 + (TG)n Simple_repeat Simple_repeat 2 53 0 184 339 146 29 chrX 105675331 105675570 -71298570 - L2 LINE L2 -718 2596 2330 1142 155 8 114 chrX 105675677 105675922 -71298218 - MER20 DNA MER1_type 0 219 1 194 299 61 41 chrX 105676649 105676796 -71297344 - L2 LINE L2 -296 2976 2827 646 192 48 41 chrX 105677016 105677162 -71296978 - MER58B DNA MER1_type 0 341 195 369 244 160 42 chrX 105677207 105677326 -71296814 - MIR SINE MIR -59 149 17 309 51 0 0 chrX 105677380 105677419 -71296721 + (CA)n Simple_repeat Simple_repeat 2 40 0 284 127 18 0 chrX 105677419 105677474 -71296666 + GA-rich Low_complexity Low_complexity 1 56 0 181 281 62 0 chrX 105677872 105677936 -71296204 - MIR SINE MIR -20 242 175 255 333 13 53 chrX 105681122 105681272 -71292868 - MIR3 SINE MIR -23 185 42 1850 108 0 35 chrX 105681285 105681545 -71292595 - AluSx SINE Alu -61 251 1 215 191 43 0 chrX 105682758 105682805 -71291335 + GA-rich Low_complexity Low_complexity 4 52 0 224 333 0 0 chrX 105683996 105684065 -71290075 + MIR3 SINE MIR 133 201 -7 2334 95 0 0 chrX 105684341 105684637 -71289503 - AluY SINE Alu -15 296 1 211 161 36 0 chrX 105684699 105684755 -71289385 + GA-rich Low_complexity Low_complexity 4 61 0 1017 229 173 32 chrX 105684965 105685386 -71288754 - L1ME1 LINE L1 0 6166 5710 276 194 0 81 chrX 105685848 105685910 -71288230 - MIR SINE MIR -155 107 51 401 354 87 39 chrX 105686702 105687083 -71287057 + L2 LINE L2 2385 2783 -531 201 171 24 0 chrX 105687999 105688040 -71286100 + CT-rich Low_complexity Low_complexity 5 46 0 744 203 0 8 chrX 105688041 105688169 -71285971 - FRAM SINE Alu -14 162 36 433 236 139 68 chrX 105688185 105688422 -71285718 - MIR SINE MIR 0 262 9 288 0 0 0 chrX 105688923 105688955 -71285185 + (CA)n Simple_repeat Simple_repeat 1 32 0 2225 124 0 0 chrX 105689336 105689634 -71284506 - AluSx SINE Alu -14 298 1 2258 116 0 0 chrX 105690458 105690760 -71283380 + AluSx SINE Alu 1 302 -10 2399 88 0 13 chrX 105691178 105691486 -71282654 - AluSg SINE Alu -6 304 1 21 0 0 0 chrX 105692348 105692369 -71281771 + AT_rich Low_complexity Low_complexity 1 21 0 75 12 0 0 chrX 105692792 105692874 -71281266 + AT_rich Low_complexity Low_complexity 1 82 0 557 232 0 11 chrX 105693115 105693397 -71280743 + (CTG)n Simple_repeat Simple_repeat 1 278 0 180 215 62 31 chrX 105694950 105695015 -71279125 - L2 LINE L2 -2090 1224 1158 407 260 31 0 chrX 105695604 105695700 -71278440 - MIR3 SINE MIR -29 179 81 2171 109 3 0 chrX 105698624 105698917 -71275223 + AluSg SINE Alu 1 294 -16 276 260 114 32 chrX 105699587 105699710 -71274430 - L2 LINE L2 -208 3064 2932 204 291 13 38 chrX 105699847 105699926 -71274214 + MIR SINE MIR 33 109 -99 2253 95 3 16 chrX 105700035 105700352 -71273788 + AluSp SINE Alu 1 313 0 672 208 79 25 chrX 105700398 105700600 -71273540 - L1MC5 LINE L1 -30 7931 7719 326 320 168 41 chrX 105700761 105701273 -71272867 + L2 LINE L2 415 991 -2323 664 282 83 58 chrX 105701328 105701550 -71272590 + L2 LINE L2 2418 2655 -659 2030 117 7 4 chrX 105701550 105701855 -71272285 - AluSq SINE Alu 0 306 1 664 282 83 58 chrX 105701855 105701979 -71272161 + L2 LINE L2 2655 2774 -540 215 354 71 10 chrX 105701970 105702069 -71272071 - MIR SINE MIR -76 132 28 * 329 287 66 8 chrX 105702182 105702304 -71271836 - MER5A DNA MER1_type -18 171 43 4044 138 48 6 chrX 105702322 105702798 -71271342 - L1MA6 LINE L1 -14 6286 5832 279 0 0 0 chrX 105702798 105702829 -71271311 + (TA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chrX 105702828 105702848 -71271292 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 4044 138 48 6 chrX 105702829 105703011 -71271129 - L1MA6 LINE L1 -468 5832 5620 361 231 120 0 chrX 105703372 105703480 -71270660 + MIR3 SINE MIR 85 205 -3 4085 222 55 10 chrX 105704158 105705095 -71269045 - MER69B DNA AcHobo -5 1221 242 231 167 0 0 chrX 105705532 105705574 -71268566 + (TA)n Simple_repeat Simple_repeat 2 43 0 393 167 13 0 chrX 105705593 105705671 -71268469 + L2 LINE L2 2482 2560 -754 23 33 0 0 chrX 105705765 105705795 -71268345 + AT_rich Low_complexity Low_complexity 1 30 0 607 206 50 0 chrX 105706020 105706161 -71267979 - MER57A LTR ERV1 -4 399 252 1737 106 57 3 chrX 105706164 105706454 -71267686 - LTR54 LTR ERV1 -165 333 1 405 244 0 12 chrX 105707060 105707142 -71266998 + L2 LINE L2 3218 3298 -15 204 40 0 0 chrX 105707144 105707169 -71266971 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 352 216 5 chrX 105707215 105707414 -71266726 + L2 LINE L2 1174 1414 -1900 701 281 67 38 chrX 105708095 105708362 -71265778 + L3 LINE CR1 1215 1489 -88 259 186 0 0 chrX 105708456 105708499 -71265641 + MIR SINE MIR 218 260 -2 841 176 0 0 chrX 105708704 105708835 -71265305 + FLAM_C SINE Alu 11 141 -2 2673 43 0 0 chrX 105708858 105709159 -71264981 - AluY SINE Alu -10 301 1 300 225 128 22 chrX 105709416 105709573 -71264567 + MIR SINE MIR 72 250 -12 2736 180 35 19 chrX 105709978 105710439 -71263701 + MER70A LTR ERVL 1 468 -4 1012 154 103 123 chrX 105710448 105710806 -71263334 + MLT1B LTR MaLR 1 351 -39 22 70 0 0 chrX 105711322 105711365 -71262775 + AT_rich Low_complexity Low_complexity 1 43 0 535 261 0 80 chrX 105711758 105711934 -71262206 - MER5B DNA MER1_type -10 168 7 230 217 313 0 chrX 105712360 105712443 -71261697 - L2 LINE L2 0 3272 3164 554 260 124 16 chrX 105712581 105712600 -71261540 - MIR SINE MIR -6 256 240 3131 174 45 6 chrX 105712600 105713129 -71261011 - MER44D DNA MER2_type 0 605 1 554 260 124 16 chrX 105713129 105713304 -71260836 - MIR SINE MIR -22 240 45 813 226 128 18 chrX 105713397 105713623 -71260517 - MIR SINE MIR -10 252 2 843 230 121 11 chrX 105713660 105713896 -71260244 + MIR SINE MIR 2 262 0 1159 344 81 39 chrX 105713982 105714940 -71259200 - L2 LINE L2 -252 3020 2034 1862 159 6 22 chrX 105715118 105715468 -71258672 + AluSx SINE Alu 3 347 0 216 209 45 30 chrX 105715762 105715829 -71258311 - L2 LINE L2 -1307 2007 1940 546 256 187 36 chrX 105716044 105716294 -71257846 + Charlie8 DNA MER1_type 31 313 -2104 1827 169 27 9 chrX 105716351 105716683 -71257457 - MER58B DNA MER1_type 0 341 4 2588 71 0 0 chrX 105717377 105717688 -71256452 - AluY SINE Alu 0 311 1 237 253 45 91 chrX 105717732 105717886 -71256254 - L1ME4a LINE L1 -6 6115 5969 295 256 150 72 chrX 105717897 105718217 -71255923 - L1ME4a LINE L1 -195 5926 5582 252 59 0 0 chrX 105718520 105718554 -71255586 + (CAA)n Simple_repeat Simple_repeat 1 34 0 2061 64 15 26 chrX 105718586 105718850 -71255290 + AluY SINE Alu 30 290 -21 1147 233 9 64 chrX 105718984 105719328 -71254812 + MER46C DNA MER2_type 8 332 -6 336 83 0 0 chrX 105719345 105719393 -71254747 + (TG)n Simple_repeat Simple_repeat 1 48 0 1518 149 43 0 chrX 105719565 105719841 -71254299 - L1MA8 LINE L1 -5 6286 5999 3070 96 41 2 chrX 105719941 105720356 -71253784 + MER57B LTR ERV1 1 431 -3 314 338 30 0 chrX 105721008 105721141 -71252999 - MIR3 SINE MIR -42 166 30 575 98 18 27 chrX 105721522 105721634 -71252506 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 3947 64 6 12 chrX 105721754 105722228 -71251912 - L1PA5 LINE L1 -983 5163 4691 7963 33 3 1 chrX 105722228 105723219 -71250921 + L1PA5 LINE L1 5162 6154 0 3947 64 6 12 chrX 105723219 105723262 -71250878 - L1P LINE L1 -1455 4691 4649 213 343 50 45 chrX 105723805 105724003 -71250137 + L2 LINE L2 2836 3034 -238 583 212 113 20 chrX 105724076 105724227 -71249913 + MIR SINE MIR 98 262 0 785 234 38 72 chrX 105724374 105724429 -71249711 - MIR SINE MIR 0 262 207 2350 57 0 0 chrX 105724429 105724734 -71249406 - AluY SINE Alu 0 305 1 785 234 38 72 chrX 105724734 105724942 -71249198 - MIR SINE MIR -55 207 7 827 234 88 21 chrX 105726114 105726353 -71247787 + MIR SINE MIR 2 256 -6 522 220 68 0 chrX 105726346 105726464 -71247676 - L2 LINE L2 0 3313 3188 * 429 361 41 48 chrX 105726508 105726824 -71247316 - L2 LINE L2 0 3313 3000 1054 204 74 72 chrX 105726844 105727338 -71246802 - MLT1E2 LTR MaLR 0 626 1 932 331 17 11 chrX 105727344 105727691 -71246449 - L2 LINE L2 -342 2972 2624 23 78 0 0 chrX 105727779 105727830 -71246310 + AT_rich Low_complexity Low_complexity 1 51 0 204 237 0 26 chrX 105729095 105729171 -71244969 + GA-rich Low_complexity Low_complexity 1 74 0 837 265 25 41 chrX 105729341 105729586 -71244554 - MIR SINE MIR -14 248 8 821 138 0 0 chrX 105730217 105730326 -71243814 + FLAM_C SINE Alu 2 110 -33 185 150 0 25 chrX 105730572 105730612 -71243528 + (TC)n Simple_repeat Simple_repeat 1 39 0 261 0 0 0 chrX 105730612 105730641 -71243499 + (TG)n Simple_repeat Simple_repeat 2 30 0 298 337 0 10 chrX 105730701 105730799 -71243341 - MIR3 SINE MIR -102 106 10 180 378 0 0 chrX 105730949 105731023 -71243117 + MIR3 SINE MIR 124 197 -11 420 263 183 6 chrX 105731699 105731874 -71242266 + MIR SINE MIR 5 210 -52 194 247 103 0 chrX 105731946 105732014 -71242126 - MIR SINE MIR -52 156 81 1115 71 0 7 chrX 105732139 105732294 -71241846 + (TTTC)n Simple_repeat Simple_repeat 4 157 0 187 319 72 0 chrX 105733957 105734026 -71240114 - L2 LINE L2 -74 3198 3125 756 257 119 4 chrX 105734029 105734255 -71239885 + MIR SINE MIR 11 262 0 468 248 8 0 chrX 105734270 105734387 -71239753 - MIR SINE MIR -43 219 102 239 310 23 23 chrX 105734457 105734544 -71239596 - L2 LINE L2 -201 3071 2985 2095 116 0 10 chrX 105734844 105735146 -71238994 + AluSx SINE Alu 5 303 -9 1948 95 70 7 chrX 105735181 105735465 -71238675 + AluSx SINE Alu 1 302 -10 913 322 44 94 chrX 105735508 105735713 -71238427 - L2 LINE L2 -92 3180 2966 2257 98 0 13 chrX 105735713 105736018 -71238122 - AluSx SINE Alu -11 301 1 913 322 44 94 chrX 105736018 105736869 -71237271 - L2 LINE L2 -306 2966 2174 1384 218 96 9 chrX 105737277 105737621 -71236519 - MLT1A2 LTR MaLR 0 374 1 300 246 15 8 chrX 105738410 105738544 -71235596 + GA-rich Low_complexity Low_complexity 2 136 0 245 143 0 20 chrX 105739064 105739113 -71235027 + (GAGAA)n Simple_repeat Simple_repeat 4 51 0 381 242 8 75 chrX 105740019 105740139 -71234001 - MIR SINE MIR -78 130 19 244 259 111 12 chrX 105740324 105740405 -71233735 - MER5A DNA MER1_type -3 186 98 464 284 111 53 chrX 105740824 105740869 -71233271 + L2 LINE L2 1925 1966 -1348 4283 136 36 21 chrX 105740869 105741585 -71232555 - LTR8A LTR ERV1 0 727 1 464 284 111 53 chrX 105741585 105741898 -71232242 + L2 LINE L2 1966 2304 -1010 222 194 0 42 chrX 105742060 105742132 -71232008 + A-rich Low_complexity Low_complexity 2 70 0 409 301 9 0 chrX 105742145 105742258 -71231882 + MER33 DNA MER1_type 1 114 -210 216 0 0 0 chrX 105742278 105742302 -71231838 + (T)n Simple_repeat Simple_repeat 1 24 0 231 250 0 0 chrX 105742311 105742359 -71231781 + MIR SINE MIR 213 260 -2 596 346 30 68 chrX 105742359 105742787 -71231353 + L2 LINE L2 2856 3267 -5 283 226 16 0 chrX 105742796 105742858 -71231282 - MIR3 SINE MIR -48 160 98 398 324 131 0 chrX 105743180 105743325 -71230815 + MIR3 SINE MIR 9 172 -36 186 175 63 159 chrX 105743293 105743356 -71230784 + L3 LINE CR1 1514 1570 -7 * 184 289 60 0 chrX 105743374 105743457 -71230683 - L3b LINE CR1 -104 1479 1392 306 309 120 23 chrX 105743670 105743814 -71230326 - MIR3 SINE MIR -69 139 7 211 213 75 25 chrX 105743849 105743929 -71230211 - L3 LINE CR1 -278 1299 1216 782 247 10 36 chrX 105743964 105744042 -71230098 - MER63A DNA MER1_type -1493 195 117 1984 163 87 11 chrX 105744042 105744410 -71229730 + MSTD LTR MaLR 1 396 0 782 247 10 36 chrX 105744410 105744525 -71229615 - MER63A DNA MER1_type -1571 117 7 1143 26 13 19 chrX 105744897 105745053 -71229087 + (TTTC)n Simple_repeat Simple_repeat 1 155 0 1114 188 10 127 chrX 105745058 105745220 -71228920 - AluSp SINE Alu -37 276 165 2422 72 0 0 chrX 105745220 105745513 -71228627 - AluY SINE Alu -18 293 1 1114 188 10 127 chrX 105745513 105745658 -71228482 - AluSp SINE Alu -148 165 5 1300 170 30 101 chrX 105746952 105747358 -71226782 + MLT1A1 LTR MaLR 1 375 0 42508 37 21 2 chrX 105748007 105754076 -71220064 - L1PA2 LINE L1 0 6155 1 509 203 72 76 chrX 105754067 105754304 -71219836 - L1MC5 LINE L1 -522 7439 7204 * 399 280 70 23 chrX 105754368 105754582 -71219558 - HAL1b LINE L1 -744 604 381 243 0 0 0 chrX 105759155 105759182 -71214958 + (TA)n Simple_repeat Simple_repeat 2 28 0 230 147 0 0 chrX 105759182 105759216 -71214924 - L1MA9 LINE L1 -53 6259 6226 * 913 222 21 16 chrX 105759215 105759458 -71214682 - L1M4 LINE L1 -2321 3825 3582 3187 259 41 24 chrX 105759485 105760528 -71213612 + L1MB7 LINE L1 684 1708 -4674 2079 126 0 3 chrX 105760528 105760821 -71213319 - AluSx SINE Alu -20 292 1 3187 259 41 24 chrX 105760821 105761637 -71212503 + L1MB7 LINE L1 1708 2705 -3677 327 25 0 0 chrX 105761637 105761677 -71212463 + (TA)n Simple_repeat Simple_repeat 1 40 0 3187 259 41 24 chrX 105761677 105762230 -71211910 + L1MB7 LINE L1 2705 3247 -3135 603 82 98 0 chrX 105762232 105762533 -71211607 + (TA)n Simple_repeat Simple_repeat 1 330 0 531 58 101 5 chrX 105762545 105762926 -71211214 + (TA)n Simple_repeat Simple_repeat 1 417 0 7833 217 41 17 chrX 105763173 105766225 -71207915 + L1MB7 LINE L1 3285 6408 -12 932 221 144 0 chrX 105766250 105766513 -71207627 + MER33 DNA MER1_type 2 302 -22 207 0 0 0 chrX 105766581 105766604 -71207536 + (T)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chrX 105767293 105767323 -71206817 + AT_rich Low_complexity Low_complexity 1 30 0 11650 179 51 10 chrX 105768138 105770202 -71203938 + L1 LINE L1 15 2164 -5401 8812 189 19 2 chrX 105770203 105771978 -71202162 + L1 LINE L1 4982 6785 -780 417 83 0 0 chrX 105772003 105772063 -71202077 + L1MA4 LINE L1 5842 5901 -399 351 61 41 0 chrX 105772074 105772123 -71202017 - L1P LINE L1 -2646 3500 3450 11056 62 7 1 chrX 105772123 105773600 -71200540 - L1P LINE L1 -2656 3490 2005 11824 202 41 21 chrX 105774938 105778351 -71195789 + L1MB2 LINE L1 2296 5778 -393 214 256 39 0 chrX 105778364 105778442 -71195698 + (TA)n Simple_repeat Simple_repeat 1 81 0 802 129 0 0 chrX 105778443 105778567 -71195573 + L1MB2 LINE L1 5788 5911 -260 488 323 10 26 chrX 105778668 105778860 -71195280 + MIR SINE MIR 74 262 0 554 263 23 40 chrX 105778989 105779212 -71194928 + MIR SINE MIR 38 262 0 674 186 93 0 chrX 105779797 105779937 -71194203 - L1MB7 LINE L1 -8 6176 6024 277 233 27 40 chrX 105779939 105780089 -71194051 + T-rich Low_complexity Low_complexity 5 152 0 2758 129 11 31 chrX 105780119 105780568 -71193572 + MER34B LTR ERV1 1 440 -125 297 124 93 0 chrX 105780572 105780733 -71193407 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chrX 105780735 105780763 -71193377 + AT_rich Low_complexity Low_complexity 1 28 0 417 190 35 0 chrX 105780781 105780955 -71193185 + (TA)n Simple_repeat Simple_repeat 1 180 0 534 194 15 45 chrX 105780971 105781105 -71193035 + MER34B LTR ERV1 436 565 0 2672 173 25 59 chrX 105781105 105781699 -71192441 - L1MB7 LINE L1 -165 6009 5436 270 136 0 0 chrX 105782562 105782606 -71191534 + (TCC)n Simple_repeat Simple_repeat 2 45 0 1762 218 70 10 chrX 105783158 105783686 -71190454 - L1MB7 LINE L1 -714 5469 4920 781 356 72 10 chrX 105783687 105784089 -71190051 + L2 LINE L2 2884 3310 -3 22 0 0 0 chrX 105784175 105784197 -71189943 + AT_rich Low_complexity Low_complexity 1 22 0 356 328 94 23 chrX 105784762 105785026 -71189114 + L2 LINE L2 2059 2360 -954 462 229 64 0 chrX 105785279 105785388 -71188752 + MIR SINE MIR 72 187 -75 11488 50 2 1 chrX 105786698 105788812 -71185328 + L1PA5 LINE L1 4037 6151 -3 2150 128 0 0 chrX 105788873 105789163 -71184977 - AluSx SINE Alu -22 290 1 1617 197 34 6 chrX 105789173 105789523 -71184617 - L1MA4 LINE L1 -6 6294 5935 1075 204 5 63 chrX 105789984 105790205 -71183935 - MER63A DNA MER1_type 0 210 3 1120 215 18 18 chrX 105790845 105791068 -71183072 - MER58A DNA MER1_type 0 224 2 206 205 0 0 chrX 105792853 105792892 -71181248 + (CG)n Simple_repeat Simple_repeat 2 40 0 336 175 0 0 chrX 105792893 105792956 -71181184 + (CA)n Simple_repeat Simple_repeat 2 64 0 241 163 20 20 chrX 105793755 105793804 -71180336 - L2 LINE L2 0 3313 3265 304 326 68 15 chrX 105794113 105794245 -71179895 - MIR SINE MIR -112 150 12 240 331 108 14 chrX 105794248 105794387 -71179753 - MER5A DNA MER1_type 0 189 38 807 307 103 22 chrX 105796047 105796405 -71177735 + L3b LINE CR1 1123 1509 -74 656 228 0 0 chrX 105797334 105797448 -71176692 - MER81 DNA DNA 0 114 1 3252 158 16 2 chrX 105797807 105799083 -71175057 - L1PB1 LINE L1 -3 6148 4693 332 309 11 0 chrX 105799337 105799431 -71174709 + MIR SINE MIR 57 151 -111 279 250 100 86 chrX 105799909 105800049 -71174091 + MIR3 SINE MIR 9 150 -58 506 292 10 41 chrX 105800065 105800260 -71173880 + MIR3 SINE MIR 17 205 -3 216 220 34 17 chrX 105800267 105800326 -71173814 - L2 LINE L2 -5 3267 3208 226 318 0 56 chrX 105803004 105803111 -71171029 + MIR SINE MIR 37 137 -71 999 157 25 98 chrX 105803206 105803442 -71170698 + MER20 DNA MER1_type 1 219 0 271 240 67 67 chrX 105803856 105803960 -71170180 + L2 LINE L2 3169 3272 0 182 302 94 74 chrX 105805602 105805751 -71168389 - MER5B DNA MER1_type -6 172 21 287 343 9 9 chrX 105806068 105806173 -71167967 - MIR SINE MIR -79 129 25 191 229 82 16 chrX 105806244 105806305 -71167835 - MER5A DNA MER1_type 0 189 125 236 313 39 39 chrX 105806565 105806693 -71167447 + L2 LINE L2 2926 3053 -219 2279 114 0 0 chrX 105807592 105807899 -71166241 + AluSx SINE Alu 1 307 -5 226 299 82 21 chrX 105807961 105808058 -71166082 - MIR SINE MIR -143 119 17 347 252 96 15 chrX 105808074 105808209 -71165931 + MER5A DNA MER1_type 7 152 -37 212 205 0 0 chrX 105808771 105808810 -71165330 - L2 LINE L2 -12 3301 3263 1317 174 8 2 chrX 105808847 105809129 -71165011 - MER2 DNA MER2_type 0 345 1 727 216 0 66 chrX 105809129 105809296 -71164844 - MIR SINE MIR -105 157 2 395 294 14 0 chrX 105809437 105809575 -71164565 + MIR SINE MIR 63 206 -2 397 267 60 135 chrX 105809692 105810010 -71164130 - L2 LINE L2 -12 3260 2967 287 321 46 53 chrX 105810196 105810327 -71163813 + MIR SINE MIR 21 150 -58 494 307 30 20 chrX 105810406 105810608 -71163532 - L3b LINE CR1 -98 1485 1282 318 200 94 0 chrX 105810930 105811015 -71163125 - MLT1K LTR MaLR -5 583 491 855 83 9 0 chrX 105811317 105811426 -71162714 - HY1 scRNA scRNA -2 110 1 202 233 0 89 chrX 105812743 105812833 -71161307 - L3b LINE CR1 -373 1210 1129 * 362 300 31 15 chrX 105812815 105812945 -71161195 + L3b LINE CR1 1296 1427 -156 7380 191 21 46 chrX 105813482 105813611 -71160529 - L1MB7 LINE L1 0 6184 6053 1805 103 51 45 chrX 105813611 105813903 -71160237 - AluSx SINE Alu -18 294 1 7380 191 21 46 chrX 105813903 105814628 -71159512 - L1MB7 LINE L1 -131 6053 5311 2181 119 6 3 chrX 105814628 105814939 -71159201 - AluSx SINE Alu 0 312 1 7380 191 21 46 chrX 105814939 105815974 -71158166 - L1MB7 LINE L1 -873 5311 4351 2214 209 40 2 chrX 105815974 105816376 -71157764 + MER47B DNA MER2_type 2 418 0 7380 191 21 46 chrX 105816376 105817082 -71157058 - L1MB7 LINE L1 -1833 4351 3628 1204 159 0 6 chrX 105817214 105817396 -71156744 + AluJb SINE Alu 1 181 -131 334 266 0 17 chrX 105817728 105817833 -71156307 + MLT1H1 LTR MaLR 6 109 -481 1325 262 133 15 chrX 105817900 105818297 -71155843 + MLT1H1 LTR MaLR 110 553 -2 21 0 0 0 chrX 105818322 105818343 -71155797 + AT_rich Low_complexity Low_complexity 1 21 0 220 117 0 83 chrX 105818470 105818530 -71155610 + (TAAAAA)n Simple_repeat Simple_repeat 5 59 0 342 229 90 25 chrX 105818596 105818718 -71155422 - L1MC4a LINE L1 -1906 5902 5773 281 193 0 18 chrX 105818723 105818780 -71155360 + L2 LINE L2 3202 3257 -56 828 280 108 16 chrX 105818813 105819191 -71154949 - L1MC4a LINE L1 -2016 5792 5380 377 228 32 39 chrX 105819695 105819819 -71154321 - MIR SINE MIR -76 132 12 313 241 88 88 chrX 105819845 105820061 -71154079 - MIR SINE MIR 0 262 47 183 271 21 0 chrX 105820402 105820450 -71153690 - MIR3 SINE MIR -5 203 155 325 226 55 72 chrX 105820475 105820656 -71153484 + L2 LINE L2 3061 3238 -75 291 211 99 0 chrX 105820684 105820755 -71153385 - MIR3 SINE MIR -48 160 83 1208 286 149 24 chrX 105820873 105821688 -71152452 - L2 LINE L2 -162 3110 2196 671 243 35 29 chrX 105821734 105821907 -71152233 - MIR SINE MIR -29 233 60 584 311 51 0 chrX 105821994 105822150 -71151990 - MIR SINE MIR -53 209 40 798 146 34 146 chrX 105822150 105822383 -71151757 + MER3 DNA MER1_type 1 207 -2 584 311 51 0 chrX 105822383 105822422 -71151718 - MIR SINE MIR -222 40 4 1000 280 138 9 chrX 105822422 105822850 -71151290 - L2 LINE L2 -1220 2094 1612 688 253 131 48 chrX 105823173 105823569 -71150571 + HAL1 LINE L1 1336 1764 -743 1151 23 0 0 chrX 105823866 105823996 -71150144 + L1PA4 LINE L1 6025 6154 -1 22 80 0 0 chrX 105824316 105824366 -71149774 + AT_rich Low_complexity Low_complexity 1 50 0 7732 48 8 0 chrX 105824746 105825882 -71148258 - L1PA7 LINE L1 0 6154 5017 427 259 43 17 chrX 105826059 105826175 -71147965 - MIR SINE MIR -67 141 23 185 210 258 0 chrX 105827066 105827128 -71147012 - MIR SINE MIR -97 111 34 474 228 206 38 chrX 105827445 105827629 -71146511 + MIR SINE MIR 41 255 -7 216 0 0 0 chrX 105827636 105827660 -71146480 + (CAT)n Simple_repeat Simple_repeat 2 25 0 272 250 250 62 chrX 105827735 105827911 -71146229 + MIR SINE MIR 2 210 -52 313 259 127 44 chrX 105828317 105828475 -71145665 + MIR3 SINE MIR 5 175 -33 246 32 0 0 chrX 105828602 105828633 -71145507 + (CA)n Simple_repeat Simple_repeat 2 32 0 428 157 48 0 chrX 105828641 105828724 -71145416 + L1MA9 LINE L1 6188 6274 -38 231 317 83 25 chrX 105829106 105829226 -71144914 - MIR SINE MIR -85 177 51 348 313 12 48 chrX 105829288 105829383 -71144757 + MIR SINE MIR 63 151 -111 1923 139 71 49 chrX 105829383 105829677 -71144463 + THE1C LTR MaLR 1 306 -69 2511 81 0 0 chrX 105829677 105829984 -71144156 - AluSg SINE Alu -3 307 1 1923 139 71 49 chrX 105829984 105830056 -71144084 + THE1C LTR MaLR 306 375 0 348 313 12 48 chrX 105830056 105830126 -71144014 + MIR SINE MIR 151 222 -40 340 68 0 0 chrX 105830663 105830707 -71143433 + AluJb SINE Alu 88 131 -171 787 197 0 0 chrX 105830721 105830853 -71143287 - AluJb SINE Alu -179 133 2 285 211 28 83 chrX 105831253 105831362 -71142778 + MER5A DNA MER1_type 60 162 -27 432 324 44 15 chrX 105831426 105831645 -71142495 - MIR SINE MIR -32 230 5 249 33 0 0 chrX 105832239 105832269 -71141871 + (CA)n Simple_repeat Simple_repeat 1 30 0 348 286 176 50 chrX 105832405 105832787 -71141353 + L2 LINE L2 2601 3021 -251 219 299 15 0 chrX 105832936 105833003 -71141137 + MIR SINE MIR 195 262 0 927 168 56 116 chrX 105836865 105837097 -71137043 + MER20 DNA MER1_type 2 219 0 188 330 0 53 chrX 105837245 105837339 -71136801 + L2 LINE L2 2892 2980 -292 338 284 17 17 chrX 105837470 105837586 -71136554 - MIR3 SINE MIR -3 205 90 467 244 226 10 chrX 105837644 105837857 -71136283 + MIR SINE MIR 1 257 -5 200 197 91 61 chrX 105838847 105838913 -71135227 + MIR SINE MIR 17 84 -124 183 42 0 0 chrX 105839101 105839125 -71135015 + (TG)n Simple_repeat Simple_repeat 2 25 0 216 361 0 0 chrX 105839660 105839732 -71134408 - L2 LINE L2 -344 2970 2899 188 281 78 65 chrX 105840046 105840199 -71133941 - L2 LINE L2 -177 3095 2941 605 255 47 77 chrX 105840938 105841173 -71132967 + MIR SINE MIR 1 228 -34 248 200 0 0 chrX 105841385 105841430 -71132710 + U3 snRNA snRNA 1 45 -172 304 293 66 117 chrX 105843019 105843275 -71130865 - L2 LINE L2 -2 3270 3028 441 332 123 30 chrX 105843383 105843756 -71130384 - L2 LINE L2 -450 2864 2457 1816 254 29 20 chrX 105844191 105844679 -71129461 - LTR33 LTR ERVL 0 521 30 326 259 12 12 chrX 105846928 105847009 -71127131 + MIR SINE MIR 28 108 -154 398 270 20 10 chrX 105847129 105847229 -71126911 + MER5B DNA MER1_type 2 102 -76 686 296 193 29 chrX 105847234 105847757 -71126383 + L2 LINE L2 551 1159 -2155 351 171 66 0 chrX 105847792 105847868 -71126272 + L2 LINE L2 2141 2221 -1093 574 247 169 7 chrX 105847879 105848033 -71126107 + MER5A DNA MER1_type 11 189 0 457 311 72 6 chrX 105848041 105848208 -71125932 - MER5B DNA MER1_type 0 178 1 687 257 33 11 chrX 105848215 105848398 -71125742 + L2 LINE L2 2222 2408 -906 376 291 108 19 chrX 105848406 105848564 -71125576 + L2 LINE L2 2023 2194 -1120 310 356 19 6 chrX 105848643 105848803 -71125337 + L2 LINE L2 2420 2581 -733 2820 29 0 0 chrX 105848857 105849168 -71124972 + AluY SINE Alu 1 311 0 348 297 126 29 chrX 105849299 105849545 -71124595 + L1ME3A LINE L1 4385 4654 -1492 650 294 82 17 chrX 105849548 105849963 -71124177 + L1ME3A LINE L1 4729 5170 -976 537 238 86 25 chrX 105849975 105850212 -71123928 + MLT1I LTR MaLR 58 313 -96 429 236 23 46 chrX 105850245 105850419 -71123721 + L1ME3A LINE L1 5169 5338 -808 552 313 118 21 chrX 105850442 105850960 -71123180 + L1ME3A LINE L1 5381 5948 -222 340 312 52 51 chrX 105851035 105851329 -71122811 + MLT1H LTR MaLR 98 361 -48 468 259 205 11 chrX 105851482 105851667 -71122473 + L2 LINE L2 3091 3311 -2 205 302 86 26 chrX 105851671 105851787 -71122353 + MIR SINE MIR 123 245 -17 617 266 75 0 chrX 105851902 105852075 -71122065 + MIR SINE MIR 74 259 -3 518 203 45 30 chrX 105852865 105852998 -71121142 - L1MB7 LINE L1 0 6184 6050 586 241 230 24 chrX 105853264 105853555 -71120585 - MLT1J2 LTR MaLR -3 447 97 4002 122 43 14 chrX 105853627 105854249 -71119891 - LTR48B LTR ERV1 0 644 5 266 96 77 0 chrX 105854383 105854435 -71119705 + L1PA8 LINE L1 6115 6170 -2 21 36 0 0 chrX 105854575 105854603 -71119537 + AT_rich Low_complexity Low_complexity 1 28 0 429 229 57 33 chrX 105854843 105854965 -71119175 + MIR SINE MIR 38 141 -67 1376 176 89 25 chrX 105855053 105855375 -71118765 - THE1C LTR MaLR 0 355 1 11499 109 28 7 chrX 105855375 105856923 -71117217 - THE1C-int LTR MaLR 0 1580 1 2110 131 64 17 chrX 105856923 105857281 -71116859 - THE1C LTR MaLR 0 375 1 287 341 33 0 chrX 105857366 105857457 -71116683 - MER5A DNA MER1_type -79 110 17 1511 176 163 0 chrX 105857499 105857794 -71116346 + MER2 DNA MER2_type 2 344 0 2056 253 29 6 chrX 105859470 105859949 -71114191 + MLT1E2 LTR MaLR 137 626 0 231 328 0 0 chrX 105860587 105860654 -71113486 + CT-rich Low_complexity Low_complexity 5 71 0 2049 181 15 33 chrX 105861355 105861752 -71112388 + MLT1B LTR MaLR 1 390 0 324 113 0 65 chrX 105862099 105862161 -71111979 - L1MB1 LINE L1 -1 6167 6110 823 236 0 5 chrX 105862161 105862352 -71111788 + L1MB1 LINE L1 5879 6068 -100 232 281 0 0 chrX 105863866 105863923 -71110217 + L2 LINE L2 3216 3272 0 387 216 101 68 chrX 105864443 105864591 -71109549 - L2 LINE L2 -2 3311 3159 194 281 0 0 chrX 105864587 105864644 -71109496 + L2 LINE L2 2166 2222 -1092 * 25 0 0 0 chrX 105864672 105864697 -71109443 + AT_rich Low_complexity Low_complexity 1 25 0 17903 37 2 0 chrX 105864697 105868181 -71105959 - L1PA4 LINE L1 -3 6152 2561 383 271 121 106 chrX 105868204 105868592 -71105548 + L2 LINE L2 2920 3313 0 711 295 20 0 chrX 105868923 105869123 -71105017 + MIR SINE MIR 37 240 -22 260 328 59 25 chrX 105870112 105870231 -71103909 - MIR SINE MIR -45 217 95 202 194 65 81 chrX 105870260 105870322 -71103818 + MIR SINE MIR 124 184 -78 391 278 24 8 chrX 105870658 105870784 -71103356 + LTR16C LTR ERVL 364 491 0 808 235 26 71 chrX 105870979 105871247 -71102893 + Charlie2 DNA MER1_type 7 262 -2520 350 225 11 45 chrX 105871245 105871334 -71102806 + Charlie2 DNA MER1_type 533 618 -2244 * 1599 195 25 76 chrX 105871342 105871818 -71102322 + Charlie2b DNA MER1_type 1202 1653 -1129 2305 179 5 0 chrX 105871879 105872248 -71101892 - MLT2B1 LTR ERVL 0 520 150 3388 78 97 17 chrX 105872332 105872807 -71101333 - L1PA10 LINE L1 0 6168 5656 934 97 6 114 chrX 105872810 105872985 -71101155 - MLT2B1 LTR ERVL -364 156 1 1318 180 133 0 chrX 105872987 105873281 -71100859 - L1MD3 LINE L1 -729 7266 6934 636 258 159 11 chrX 105873282 105873546 -71100594 + Charlie2b DNA MER1_type 1792 2094 -688 10847 181 7 9 chrX 105873606 105876741 -71097399 - L1PB1 LINE L1 0 6867 3745 * 44955 43 1 1 chrX 105876737 105882959 -71091181 - L1PA3 LINE L1 0 6155 1 8338 179 82 3 chrX 105882973 105886207 -71087933 - L1PB1 LINE L1 -3115 3747 114 638 215 124 15 chrX 105886208 105886473 -71087667 + Charlie2b DNA MER1_type 2188 2481 -301 25 75 0 0 chrX 105886514 105886567 -71087573 + AT_rich Low_complexity Low_complexity 1 53 0 518 307 78 20 chrX 105886568 105886864 -71087276 - L1MD2 LINE L1 -249 6110 5798 * 973 264 68 22 chrX 105886859 105887268 -71086872 - L1MD2 LINE L1 -1236 4910 4483 480 280 44 51 chrX 105887279 105887554 -71086586 - L1MD2 LINE L1 -1867 4279 4007 638 221 25 0 chrX 105887642 105887800 -71086340 - L1MA10 LINE L1 -10 6324 6163 6786 234 54 44 chrX 105887840 105888183 -71085957 - L1 LINE L1 -1779 5786 5448 2156 151 5 22 chrX 105888183 105888553 -71085587 + THE1B LTR MaLR 1 364 0 6786 234 54 44 chrX 105888553 105888607 -71085533 - L1 LINE L1 -2117 5448 5396 346 102 0 3 chrX 105888607 105888671 -71085469 - Alu SINE Alu 0 300 248 6786 234 54 44 chrX 105888671 105888836 -71085304 - L1 LINE L1 -2169 5396 5234 2161 155 104 0 chrX 105888836 105889222 -71084918 + MSTB LTR MaLR 1 426 0 6786 234 54 44 chrX 105889222 105890771 -71083369 - L1 LINE L1 -2331 5234 3701 3056 95 28 0 chrX 105890771 105891203 -71082937 + L1PA11 LINE L1 5729 6172 -2 6786 234 54 44 chrX 105891203 105892668 -71081472 - L1 LINE L1 -3864 3701 2159 261 57 0 0 chrX 105892668 105892703 -71081437 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6786 234 54 44 chrX 105892703 105892853 -71081287 - L1 LINE L1 -5406 2159 2012 820 330 32 25 chrX 105893192 105893662 -71080478 - L1 LINE L1 -5800 1696 1224 874 222 17 0 chrX 105893673 105893903 -71080237 + Charlie2b DNA MER1_type 2532 2765 -17 189 0 0 0 chrX 105894282 105894303 -71079837 + (T)n Simple_repeat Simple_repeat 1 21 0 5954 116 16 1 chrX 105894627 105895585 -71078555 + L1MA2 LINE L1 5333 6304 0 880 247 15 71 chrX 105895625 105895939 -71078201 + MLT2B1 LTR ERVL 232 502 -18 229 268 127 14 chrX 105896022 105896093 -71078047 + MIR3 SINE MIR 92 170 -38 272 243 27 0 chrX 105896505 105896579 -71077561 + (TA)n Simple_repeat Simple_repeat 1 76 0 279 79 0 0 chrX 105896580 105896618 -71077522 + (TG)n Simple_repeat Simple_repeat 2 39 0 1952 207 42 94 chrX 105896813 105897153 -71076987 - L1ME3 LINE L1 -67 6095 5739 2114 112 21 53 chrX 105897153 105897529 -71076611 - THE1B LTR MaLR 0 364 1 11577 94 16 1 chrX 105897529 105899085 -71075055 - THE1B-int LTR MaLR 0 1580 1 1852 126 38 67 chrX 105899086 105899459 -71074681 - THE1B LTR MaLR -1 363 2 1952 207 42 94 chrX 105899459 105899825 -71074315 - L1ME3 LINE L1 -421 5741 5423 238 329 0 0 chrX 105900364 105900443 -71073697 + Charlie8 DNA MER1_type 2335 2413 -4 542 179 194 8 chrX 105901021 105901155 -71072985 - MER5A DNA MER1_type -30 159 1 261 0 0 0 chrX 105901328 105901357 -71072783 + (T)n Simple_repeat Simple_repeat 1 29 0 214 162 0 0 chrX 105901724 105901761 -71072379 + CT-rich Low_complexity Low_complexity 2 38 0 480 270 36 0 chrX 105901928 105902039 -71072101 - MER5A DNA MER1_type -12 177 63 404 211 70 9 chrX 105902041 105902155 -71071985 - L1MB7 LINE L1 -10 6174 6054 1612 189 3 14 chrX 105902545 105902836 -71071304 + AluJo SINE Alu 25 312 0 201 297 16 0 chrX 105903362 105903426 -71070714 - MER5A DNA MER1_type -116 73 9 209 200 0 0 chrX 105904238 105904273 -71069867 - L2 LINE L2 -15 3298 3264 4992 165 18 17 chrX 105904309 105904629 -71069511 + L1M1 LINE L1 4270 4588 -1715 2096 138 7 0 chrX 105904629 105904927 -71069213 - AluSx SINE Alu -12 300 1 4992 165 18 17 chrX 105904927 105906094 -71068046 + L1M1 LINE L1 4588 5765 -538 2000 164 123 5 chrX 105906095 105906478 -71067662 + MSTA LTR MaLR 1 428 0 8959 154 48 2 chrX 105906478 105908057 -71066083 + MSTA-int LTR MaLR 1 1651 0 1748 119 175 6 chrX 105908057 105908377 -71065763 + MSTA LTR MaLR 1 374 -54 1423 209 42 24 chrX 105908440 105908771 -71065369 + MLT1E3 LTR MaLR 288 624 0 570 288 77 12 chrX 105908801 105908971 -71065169 - MER5A DNA MER1_type -5 184 4 339 245 10 82 chrX 105909371 105909469 -71064671 + L2 LINE L2 3182 3272 0 457 318 78 7 chrX 105909483 105909637 -71064503 + L2 LINE L2 3108 3272 0 317 292 83 28 chrX 105910631 105910775 -71063365 + MIR SINE MIR 56 207 -55 205 167 0 0 chrX 105911101 105911137 -71063003 + (TG)n Simple_repeat Simple_repeat 1 36 0 22834 165 15 24 chrX 105911474 105912956 -71061184 - L1PA10 LINE L1 -5 6478 4985 201 39 0 0 chrX 105912956 105912982 -71061158 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22834 165 15 24 chrX 105912982 105917896 -71056244 - L1PA10 LINE L1 -1498 4985 1 249 318 0 0 chrX 105918796 105918862 -71055278 + MIR SINE MIR 65 130 -78 269 292 10 31 chrX 105919130 105919226 -71054914 - MLT1K LTR MaLR -366 222 129 986 330 102 7 chrX 105919375 105919856 -71054284 - L2 LINE L2 0 3313 2785 18667 121 6 34 chrX 105921190 105924368 -71049772 + L1PA6 LINE L1 11 3097 -3049 15546 78 1 3 chrX 105924369 105927279 -71046861 + L1PA6 LINE L1 3240 6154 0 308 326 0 0 chrX 105927652 105927738 -71046402 - L2 LINE L2 -1 3271 3186 185 212 0 0 chrX 105927929 105927962 -71046178 + L2 LINE L2 3184 3216 -56 346 328 30 23 chrX 105928021 105928152 -71045988 - L2 LINE L2 -21 3292 3161 370 380 30 61 chrX 105928205 105928697 -71045443 - L2 LINE L2 -686 2628 2152 276 53 0 0 chrX 105929207 105929245 -71044895 + (TG)n Simple_repeat Simple_repeat 2 39 0 301 250 0 0 chrX 105929626 105929706 -71044434 - L1ME2 LINE L1 -9 6155 6076 216 355 0 0 chrX 105930076 105930138 -71044002 + L2 LINE L2 3179 3240 -32 423 344 38 6 chrX 105930198 105930355 -71043785 + L2 LINE L2 2633 2794 -520 786 224 46 10 chrX 105930599 105930795 -71043345 + MER105 DNA DNA 2 204 0 210 244 0 0 chrX 105930874 105930915 -71043225 - MIR3 SINE MIR -17 191 151 517 316 0 19 chrX 105930916 105931074 -71043066 - MER5A DNA MER1_type -3 186 32 184 292 11 101 chrX 105931283 105931372 -71042768 + L3 LINE CR1 1490 1570 -7 304 250 61 15 chrX 105932176 105932308 -71041832 - MER103 DNA DNA 0 166 29 419 303 9 34 chrX 105932639 105932814 -71041326 + MIR SINE MIR 32 201 -61 2746 97 3 0 chrX 105933744 105934105 -71040035 + THE1B LTR MaLR 1 362 -2 1302 262 32 74 chrX 105934114 105934716 -71039424 - MLT1E LTR MaLR -19 574 1 265 329 26 0 chrX 105935290 105935366 -71038774 - L2 LINE L2 -11 3302 3225 389 320 33 39 chrX 105935890 105936043 -71038097 - L2 LINE L2 -8 3264 3113 3724 53 0 9 chrX 105936725 105937177 -71036963 - LTR7 LTR ERV1 -2 448 1 2707 65 39 13 chrX 105937177 105937559 -71036581 - HERVH LTR ERV1 0 7713 7322 1430 130 19 0 chrX 105937557 105937773 -71036367 - HERVH LTR ERV1 -1894 5819 5600 * 4231 145 12 1 chrX 105937774 105938429 -71035711 - HERVH LTR ERV1 -2564 5149 4488 3392 122 4 2 chrX 105938431 105938932 -71035208 - HERVH LTR ERV1 -3720 3993 3492 * 20368 81 57 62 chrX 105938922 105942228 -71031912 - HERVH LTR ERV1 -4423 3290 1 3744 53 0 9 chrX 105942251 105942703 -71031437 - LTR7 LTR ERV1 -2 448 1 343 233 17 108 chrX 105943449 105943492 -71030648 - MER5A DNA MER1_type -1 188 143 964 152 0 93 chrX 105943492 105943696 -71030444 - MER53 DNA DNA -4 185 1 343 233 17 108 chrX 105943696 105943772 -71030368 - MER5A DNA MER1_type -46 143 80 600 172 33 8 chrX 105944102 105944224 -71029916 - MIR SINE MIR -2 260 136 384 77 0 0 chrX 105944569 105944621 -71029519 + (TG)n Simple_repeat Simple_repeat 2 53 0 468 276 39 0 chrX 105945228 105945355 -71028785 - L2 LINE L2 0 3313 3182 609 240 52 74 chrX 105946029 105946258 -71027882 - LTR67 LTR ERVL -2 555 332 1954 190 53 8 chrX 105946263 105946813 -71027327 + MER90 LTR ERV1 1 614 0 1072 256 38 21 chrX 105946833 105947122 -71027018 - LTR67 LTR ERVL -235 322 29 917 319 12 61 chrX 105947159 105947569 -71026571 + LTR16A1 LTR ERVL 26 415 -42 6013 149 32 16 chrX 105947579 105949392 -71024748 + L1MA8 LINE L1 4441 6288 -3 2746 134 59 7 chrX 105949760 105950169 -71023971 + MSTB1 LTR MaLR 1 430 -2 738 308 23 11 chrX 105950227 105950487 -71023653 - ERVL LTR ERVL -428 5336 5074 529 316 47 8 chrX 105950662 105950896 -71023244 - ERVL LTR ERVL -914 4850 4608 1361 300 25 14 chrX 105950907 105951394 -71022746 - ERVL LTR ERVL -1257 4507 4016 405 344 23 41 chrX 105951658 105951879 -71022261 + MIR SINE MIR 21 237 -25 228 261 0 0 chrX 105952953 105952999 -71021141 - MIR SINE MIR -171 91 46 241 253 75 89 chrX 105953550 105953696 -71020444 - L2 LINE L2 -9 3304 3161 707 294 31 18 chrX 105953818 105954080 -71020060 - MIR SINE MIR 0 262 5 7768 206 33 26 chrX 105954170 105954295 -71019845 - L1 LINE L1 -2201 4127 4004 2471 114 111 8 chrX 105954295 105954681 -71019459 + MSTA LTR MaLR 1 426 -2 7768 206 33 26 chrX 105954681 105956284 -71017856 - L1 LINE L1 -2324 4004 2414 2261 96 7 3 chrX 105956284 105956585 -71017555 - AluY SINE Alu -9 302 1 7768 206 33 26 chrX 105956585 105957258 -71016882 - L1 LINE L1 -3914 2414 1747 1677 168 24 13 chrX 105957258 105957556 -71016584 - AluJo SINE Alu -11 301 1 7768 206 33 26 chrX 105957556 105959255 -71014885 - L1 LINE L1 -4581 1747 1 405 336 24 43 chrX 105959265 105959321 -71014819 - MIR SINE MIR -55 207 151 1833 158 14 14 chrX 105959321 105959618 -71014522 - AluJb SINE Alu -15 297 1 405 336 24 43 chrX 105959618 105959772 -71014368 - MIR SINE MIR -111 151 1 240 86 0 0 chrX 105959966 105960001 -71014139 + (GA)n Simple_repeat Simple_repeat 1 35 0 432 302 50 28 chrX 105960600 105960782 -71013358 - MIR SINE MIR -7 255 70 2451 67 0 7 chrX 105960977 105961275 -71012865 + AluY SINE Alu 4 299 -12 463 305 183 5 chrX 105962088 105962285 -71011855 - MIR SINE MIR -1 261 30 10682 141 19 2 chrX 105962902 105965003 -71009137 + L1M1 LINE L1 2001 4132 -3433 43270 38 22 1 chrX 105965017 105971043 -71003097 - L1PA3 LINE L1 0 6155 3 6726 198 16 10 chrX 105971043 105971111 -71003029 + L1M1 LINE L1 4122 4188 -3377 1937 142 3 3 chrX 105971111 105971420 -71002720 - AluSx SINE Alu 0 309 1 6726 198 16 10 chrX 105971420 105972804 -71001336 + L1M1 LINE L1 4188 5584 -1981 1018 147 0 0 chrX 105972805 105972962 -71001178 + MER41A LTR ERV1 398 554 0 2624 117 14 5 chrX 105972963 105973332 -71000808 + MER41A-int LTR ERV1 2 373 -5573 270 136 0 0 chrX 105973407 105973451 -71000689 + (TCC)n Simple_repeat Simple_repeat 2 45 0 1856 218 70 10 chrX 105974003 105974531 -70999609 - L1P4 LINE L1 -697 5469 4920 745 338 85 22 chrX 105974532 105974934 -70999206 + L2 LINE L2 2884 3310 -3 22 0 0 0 chrX 105975020 105975042 -70999098 + AT_rich Low_complexity Low_complexity 1 22 0 347 333 163 19 chrX 105975607 105975871 -70998269 + L2 LINE L2 2059 2360 -954 453 229 64 0 chrX 105976124 105976233 -70997907 + MIR SINE MIR 72 187 -75 11488 50 2 1 chrX 105977542 105979656 -70994484 + L1PA5 LINE L1 4037 6151 -3 2150 128 0 0 chrX 105979717 105980007 -70994133 - AluSx SINE Alu -22 290 1 1617 197 34 6 chrX 105980017 105980367 -70993773 - L1MA4 LINE L1 -6 6294 5935 1075 204 5 63 chrX 105980828 105981049 -70993091 - MER63A DNA MER1_type 0 210 3 1120 215 18 18 chrX 105981689 105981912 -70992228 - MER58A DNA MER1_type 0 224 2 206 205 0 0 chrX 105983697 105983736 -70990404 + (CG)n Simple_repeat Simple_repeat 2 40 0 297 197 0 0 chrX 105983737 105983798 -70990342 + (CA)n Simple_repeat Simple_repeat 2 62 0 241 163 20 20 chrX 105984597 105984646 -70989494 - L2 LINE L2 0 3313 3265 304 326 68 15 chrX 105984955 105985087 -70989053 - MIR SINE MIR -112 150 12 240 331 108 14 chrX 105985090 105985229 -70988911 - MER5A DNA MER1_type 0 189 38 807 307 103 22 chrX 105986888 105987246 -70986894 + L3b LINE CR1 1123 1509 -74 656 228 0 0 chrX 105988175 105988289 -70985851 - MER81 DNA DNA 0 114 1 3252 158 16 2 chrX 105988648 105989924 -70984216 - L1PB1 LINE L1 -3 6148 4693 332 309 11 0 chrX 105990178 105990272 -70983868 + MIR SINE MIR 57 151 -111 279 250 100 86 chrX 105990750 105990890 -70983250 + MIR3 SINE MIR 9 150 -58 506 292 10 41 chrX 105990906 105991101 -70983039 + MIR3 SINE MIR 17 205 -3 213 204 0 20 chrX 105991108 105991157 -70982983 - L2 LINE L2 -5 3267 3220 19108 35 0 3 chrX 106042169 106045143 -70928997 + L1PA2 LINE L1 3216 6155 0 1330 174 23 107 chrX 106045792 106046198 -70927942 - MLT1A1 LTR MaLR 0 428 1 1524 168 3 62 chrX 106047492 106047637 -70926503 + AluJo SINE Alu 5 126 -186 2457 70 0 16 chrX 106047637 106047949 -70926191 + AluY SINE Alu 1 307 -4 1524 168 3 62 chrX 106047949 106048095 -70926045 + AluJo SINE Alu 126 279 -33 1057 22 0 22 chrX 106048097 106048235 -70925905 + (GAAA)n Simple_repeat Simple_repeat 1 135 0 790 247 10 36 chrX 106048607 106048722 -70925418 + MER63A DNA MER1_type 7 117 -1571 2158 163 87 11 chrX 106048722 106049090 -70925050 - MSTD LTR MaLR 0 396 1 790 247 10 36 chrX 106049090 106049168 -70924972 + MER63A DNA MER1_type 117 195 -15 198 213 75 25 chrX 106049203 106049283 -70924857 + L3 LINE CR1 1216 1299 -278 301 267 136 28 chrX 106049318 106049513 -70924627 + MIR3 SINE MIR 7 262 0 189 175 63 159 chrX 106049776 106049839 -70924301 - L3 LINE CR1 -7 1570 1514 * 379 324 131 0 chrX 106049807 106049952 -70924188 - MIR3 SINE MIR -36 172 9 252 242 16 0 chrX 106050274 106050336 -70923804 + MIR3 SINE MIR 98 160 -48 579 350 31 62 chrX 106050345 106050762 -70923378 - L2 LINE L2 -5 3267 2864 227 250 0 0 chrX 106050773 106050821 -70923319 - MIR SINE MIR -2 260 213 216 0 0 0 chrX 106050830 106050854 -70923286 + (A)n Simple_repeat Simple_repeat 1 24 0 418 268 150 0 chrX 106050860 106050987 -70923153 - MER33 DNA MER1_type -178 146 1 222 194 0 42 chrX 106051000 106051072 -70923068 + T-rich Low_complexity Low_complexity 2 70 0 447 285 114 51 chrX 106051234 106051547 -70922593 - L2 LINE L2 -1010 2304 1965 4629 138 36 21 chrX 106051547 106052263 -70921877 + LTR8A LTR ERV1 1 727 0 447 285 114 51 chrX 106052263 106052300 -70921840 - L2 LINE L2 -1349 1965 1932 236 259 111 12 chrX 106052727 106052808 -70921332 + MER5A DNA MER1_type 98 186 -3 390 242 8 75 chrX 106052993 106053113 -70921027 + MIR SINE MIR 19 130 -78 245 143 0 20 chrX 106054019 106054068 -70920072 + (TTCTC)n Simple_repeat Simple_repeat 4 51 0 300 246 15 8 chrX 106054588 106054722 -70919418 + CT-rich Low_complexity Low_complexity 2 136 0 1523 215 96 9 chrX 106055511 106055855 -70918285 + MLT1A2 LTR MaLR 1 374 0 901 322 44 94 chrX 106056263 106057114 -70917026 + L2 LINE L2 2174 2966 -306 2277 98 0 13 chrX 106057114 106057419 -70916721 + AluSx SINE Alu 1 301 -11 901 322 44 94 chrX 106057419 106057624 -70916516 + L2 LINE L2 2966 3180 -92 1921 96 71 7 chrX 106057667 106057948 -70916192 - AluSx SINE Alu -13 299 1 2095 116 0 10 chrX 106057983 106058285 -70915855 - AluSx SINE Alu -9 303 5 239 310 23 23 chrX 106058585 106058672 -70915468 + L2 LINE L2 2985 3071 -201 468 248 8 0 chrX 106058742 106058859 -70915281 + MIR SINE MIR 102 219 -43 756 257 119 4 chrX 106058874 106059100 -70915040 - MIR SINE MIR 0 262 11 187 319 72 0 chrX 106059103 106059172 -70914968 + L2 LINE L2 3125 3198 -74 837 136 0 19 chrX 106060800 106060962 -70913178 + (GAAA)n Simple_repeat Simple_repeat 3 161 0 194 247 103 0 chrX 106061087 106061155 -70912985 + MIR SINE MIR 81 156 -52 420 263 183 6 chrX 106061227 106061402 -70912738 - MIR SINE MIR -52 210 5 180 378 0 0 chrX 106062072 106062146 -70911994 - MIR3 SINE MIR -11 197 124 298 337 0 10 chrX 106062296 106062394 -70911746 + MIR3 SINE MIR 10 106 -102 387 0 0 0 chrX 106062454 106062497 -70911643 + (CA)n Simple_repeat Simple_repeat 2 44 0 195 162 0 0 chrX 106062497 106062534 -70911606 + GA-rich Low_complexity Low_complexity 1 37 0 821 138 0 0 chrX 106062780 106062889 -70911251 - FLAM_C SINE Alu -33 110 2 837 265 25 41 chrX 106063520 106063765 -70910375 + MIR SINE MIR 8 248 -14 204 237 0 26 chrX 106063935 106064011 -70910129 + CT-rich Low_complexity Low_complexity 1 74 0 23 78 0 0 chrX 106065276 106065327 -70908813 + AT_rich Low_complexity Low_complexity 1 51 0 932 331 17 11 chrX 106065415 106065762 -70908378 + L2 LINE L2 2624 2972 -342 1054 204 74 72 chrX 106065768 106066262 -70907878 + MLT1E2 LTR MaLR 1 626 0 429 361 41 48 chrX 106066282 106066598 -70907542 + L2 LINE L2 3000 3313 0 522 220 68 0 chrX 106066642 106066760 -70907380 + L2 LINE L2 3188 3313 0 * 827 234 88 21 chrX 106066753 106066992 -70907148 - MIR SINE MIR -6 256 2 785 234 38 72 chrX 106068164 106068372 -70905768 + MIR SINE MIR 7 207 -55 2351 57 0 0 chrX 106068372 106068677 -70905463 + AluY SINE Alu 1 305 0 785 234 38 72 chrX 106068677 106068732 -70905408 + MIR SINE MIR 207 262 0 583 212 113 20 chrX 106068879 106069030 -70905110 - MIR SINE MIR 0 262 98 213 343 50 45 chrX 106069103 106069301 -70904839 - L2 LINE L2 -238 3034 2836 3947 64 6 12 chrX 106069844 106069887 -70904253 + L1P LINE L1 4649 4691 -1455 7963 33 0 0 chrX 106069887 106070878 -70903262 - L1PA5 LINE L1 0 6154 5162 3947 64 6 12 chrX 106070878 106071352 -70902788 + L1PA5 LINE L1 4691 5163 -983 572 99 0 36 chrX 106071472 106071583 -70902557 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 314 338 30 0 chrX 106071964 106072097 -70902043 + MIR3 SINE MIR 30 166 -42 3070 96 41 2 chrX 106072749 106073164 -70900976 - MER57B LTR ERV1 -3 431 1 1518 149 43 0 chrX 106073264 106073540 -70900600 + L1MA8 LINE L1 5999 6286 -5 318 87 0 0 chrX 106073712 106073758 -70900382 + (CA)n Simple_repeat Simple_repeat 1 46 0 1147 233 9 64 chrX 106073775 106074119 -70900021 - MER46C DNA MER2_type -6 332 8 2061 64 15 26 chrX 106074253 106074517 -70899623 - AluY SINE Alu -21 290 30 252 59 0 0 chrX 106074549 106074583 -70899557 + (TTG)n Simple_repeat Simple_repeat 1 34 0 295 256 150 72 chrX 106074886 106075206 -70898934 + L1ME4a LINE L1 5582 5926 -195 237 253 45 91 chrX 106075217 106075371 -70898769 + L1ME4a LINE L1 5969 6115 -6 2593 68 0 0 chrX 106075415 106075724 -70898416 + AluY SINE Alu 1 309 -2 1827 169 27 9 chrX 106076421 106076753 -70897387 + MER58B DNA MER1_type 4 341 0 546 256 187 36 chrX 106076810 106077060 -70897080 - Charlie8 DNA MER1_type -2129 288 31 216 209 45 30 chrX 106077275 106077342 -70896798 + L2 LINE L2 1940 2007 -1307 180 152 0 0 chrX 106077636 106077669 -70896471 + T-rich Low_complexity Low_complexity 1 33 0 1861 159 6 22 chrX 106077671 106077986 -70896154 - AluSx SINE Alu 0 312 3 1159 344 81 39 chrX 106078164 106079122 -70895018 + L2 LINE L2 2034 3020 -252 843 230 121 11 chrX 106079208 106079444 -70894696 - MIR SINE MIR 0 262 2 813 226 128 18 chrX 106079481 106079707 -70894433 + MIR SINE MIR 2 252 -10 554 260 124 16 chrX 106079800 106079975 -70894165 + MIR SINE MIR 45 240 -22 3131 174 45 6 chrX 106079975 106080504 -70893636 + MER44D DNA MER2_type 1 605 0 554 260 124 16 chrX 106080504 106080523 -70893617 + MIR SINE MIR 240 256 -6 230 217 313 0 chrX 106080661 106080744 -70893396 + L2 LINE L2 3164 3272 0 535 261 0 80 chrX 106081170 106081346 -70892794 + MER5B DNA MER1_type 7 168 -10 22 70 0 0 chrX 106081739 106081782 -70892358 + AT_rich Low_complexity Low_complexity 1 43 0 1012 154 103 123 chrX 106082298 106082656 -70891484 - MLT1B LTR MaLR -39 351 1 2736 180 35 19 chrX 106082665 106083126 -70891014 - MER70A LTR ERVL -4 468 1 300 225 128 22 chrX 106083531 106083688 -70890452 - MIR SINE MIR -12 250 72 2676 40 0 0 chrX 106083945 106084245 -70889895 + AluY SINE Alu 1 300 -11 841 176 0 0 chrX 106084268 106084399 -70889741 - FLAM_C SINE Alu -2 141 11 259 186 0 0 chrX 106084604 106084647 -70889493 - MIR SINE MIR -2 260 218 701 281 67 38 chrX 106084741 106085008 -70889132 - L3 LINE CR1 -88 1489 1215 183 352 216 5 chrX 106085689 106085888 -70888252 - L2 LINE L2 -1900 1414 1174 276 30 0 0 chrX 106085934 106085967 -70888173 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 405 244 0 12 chrX 106085969 106086051 -70888089 - L2 LINE L2 -15 3298 3218 1737 106 57 3 chrX 106086657 106086947 -70887193 + LTR54 LTR ERV1 1 333 -165 607 206 50 0 chrX 106086950 106087091 -70887049 + MER57A LTR ERV1 252 399 -4 23 33 0 0 chrX 106087316 106087346 -70886794 + AT_rich Low_complexity Low_complexity 1 30 0 393 167 13 0 chrX 106087440 106087518 -70886622 - L2 LINE L2 -754 2560 2482 231 167 0 0 chrX 106087537 106087579 -70886561 + (TA)n Simple_repeat Simple_repeat 2 43 0 4072 223 55 10 chrX 106088016 106088953 -70885187 + MER69B DNA AcHobo 242 1221 -5 361 231 120 0 chrX 106089631 106089739 -70884401 - MIR3 SINE MIR -3 205 85 4044 138 48 6 chrX 106090100 106090263 -70883877 + L1MA6 LINE L1 5620 5775 -525 216 0 0 0 chrX 106090263 106090287 -70883853 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 261 0 0 0 chrX 106090286 106090315 -70883825 + (TA)n Simple_repeat Simple_repeat 2 30 0 4044 138 48 6 chrX 106090287 106090791 -70883349 + L1MA6 LINE L1 5775 6286 -14 329 287 66 8 chrX 106090809 106090931 -70883209 + MER5A DNA MER1_type 43 171 -18 215 354 71 10 chrX 106091044 106091143 -70882997 + MIR SINE MIR 28 132 -76 * 664 282 83 58 chrX 106091134 106091258 -70882882 - L2 LINE L2 -540 2774 2655 2031 117 7 4 chrX 106091258 106091563 -70882577 + AluSq SINE Alu 1 306 0 664 282 83 58 chrX 106091563 106091785 -70882355 - L2 LINE L2 -659 2655 2418 326 320 168 41 chrX 106091840 106092352 -70881788 - L2 LINE L2 -2323 991 415 672 208 79 25 chrX 106092513 106092715 -70881425 + L1MC5 LINE L1 7719 7931 -30 2253 95 3 16 chrX 106092761 106093078 -70881062 - AluSp SINE Alu 0 313 1 204 291 13 38 chrX 106093187 106093266 -70880874 - MIR SINE MIR -99 109 33 276 260 114 32 chrX 106093403 106093526 -70880614 + L2 LINE L2 2932 3064 -208 2171 109 3 0 chrX 106094196 106094489 -70879651 - AluSg SINE Alu -16 294 1 407 260 31 0 chrX 106097414 106097510 -70876630 + MIR3 SINE MIR 81 179 -29 180 215 62 31 chrX 106098099 106098164 -70875976 + L2 LINE L2 1158 1224 -2090 557 221 0 12 chrX 106099717 106099999 -70874141 + (CAG)n Simple_repeat Simple_repeat 1 278 0 70 13 0 0 chrX 106100240 106100317 -70873823 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chrX 106100745 106100766 -70873374 + AT_rich Low_complexity Low_complexity 1 21 0 2408 87 0 13 chrX 106101628 106101937 -70872203 + AluSg SINE Alu 1 305 -5 2258 116 0 0 chrX 106102355 106102657 -70871483 - AluSx SINE Alu -10 302 1 2225 124 0 0 chrX 106103481 106103779 -70870361 + AluSx SINE Alu 1 298 -14 270 0 0 0 chrX 106104160 106104190 -70869950 + (TG)n Simple_repeat Simple_repeat 1 30 0 433 236 139 68 chrX 106104691 106104928 -70869212 + MIR SINE MIR 9 262 0 725 211 0 8 chrX 106104944 106105072 -70869068 + FRAM SINE Alu 36 162 -14 201 171 24 0 chrX 106105073 106105114 -70869026 + GA-rich Low_complexity Low_complexity 5 46 0 401 354 87 39 chrX 106106030 106106411 -70867729 - L2 LINE L2 -531 2783 2385 276 194 0 81 chrX 106107203 106107265 -70866875 + MIR SINE MIR 51 107 -155 1017 229 173 32 chrX 106107727 106108148 -70865992 + L1ME1 LINE L1 5710 6166 0 211 161 36 0 chrX 106108358 106108414 -70865726 + CT-rich Low_complexity Low_complexity 4 61 0 2334 95 0 0 chrX 106108476 106108772 -70865368 + AluY SINE Alu 1 296 -15 224 333 0 0 chrX 106109048 106109117 -70865023 - MIR3 SINE MIR -7 201 133 215 191 43 0 chrX 106110306 106110353 -70863787 + CT-rich Low_complexity Low_complexity 4 52 0 1850 108 0 35 chrX 106111566 106111826 -70862314 + AluSx SINE Alu 1 251 -61 255 333 13 53 chrX 106111839 106111989 -70862151 + MIR3 SINE MIR 42 185 -23 181 281 62 0 chrX 106115200 106115264 -70858876 + MIR SINE MIR 175 242 -20 284 127 18 0 chrX 106115662 106115717 -70858423 + CT-rich Low_complexity Low_complexity 1 56 0 291 54 0 0 chrX 106115717 106115754 -70858386 + (TG)n Simple_repeat Simple_repeat 2 38 0 369 244 160 42 chrX 106115808 106115927 -70858213 + MIR SINE MIR 17 149 -59 646 192 48 41 chrX 106115972 106116118 -70858022 + MER58B DNA MER1_type 195 341 0 194 299 61 41 chrX 106116338 106116485 -70857655 + L2 LINE L2 2827 2976 -296 1142 155 8 114 chrX 106117211 106117456 -70856684 + MER20 DNA MER1_type 1 219 0 264 154 0 0 chrX 106117844 106117896 -70856244 + (CA)n Simple_repeat Simple_repeat 2 53 0 2169 123 7 0 chrX 106117967 106118275 -70855865 + AluSx SINE Alu 1 310 -2 415 149 26 26 chrX 106118278 106118392 -70855748 + GA-rich Low_complexity Low_complexity 3 116 0 202 292 0 0 chrX 106118419 106118467 -70855673 - L2 LINE L2 -3 3310 3263 417 200 43 87 chrX 106118837 106118952 -70855188 - L2 LINE L2 0 3313 3204 238 105 26 0 chrX 106119659 106119697 -70854443 + MER11C LTR ERVK 217 255 -816 2170 106 10 6 chrX 106120419 106120762 -70853378 + AluSx SINE Alu 1 312 0 250 341 43 36 chrX 106123679 106123817 -70850323 + MIR3 SINE MIR 3 141 -67 231 190 0 0 chrX 106125036 106125094 -70849046 + (TA)n Simple_repeat Simple_repeat 2 59 0 234 312 9 64 chrX 106125650 106125759 -70848381 + MIR SINE MIR 6 109 -99 423 0 0 0 chrX 106125839 106125886 -70848254 + (CA)n Simple_repeat Simple_repeat 2 48 0 2185 82 13 30 chrX 106126454 106126757 -70847383 + AluSc SINE Alu 1 298 -11 281 279 8 0 chrX 106126795 106126924 -70847216 + (TA)n Simple_repeat Simple_repeat 1 130 0 3156 130 20 124 chrX 106127401 106128109 -70846031 + L1MCa LINE L1 426 1059 -5367 623 264 132 20 chrX 106128614 106128811 -70845329 - MIR SINE MIR -10 252 34 239 315 22 22 chrX 106130790 106130882 -70843258 - MIR3 SINE MIR -6 202 111 2139 121 10 13 chrX 106130895 106131208 -70842932 + AluSx SINE Alu 1 312 0 317 328 48 75 chrX 106132390 106132725 -70841415 - L2 LINE L2 -1 3271 2946 293 299 85 40 chrX 106132753 106132930 -70841210 - L2 LINE L2 -429 2885 2701 2425 90 3 0 chrX 106134460 106134771 -70839369 + AluSp SINE Alu 2 313 0 390 146 0 0 chrX 106136011 106136093 -70838047 + (CTG)n Simple_repeat Simple_repeat 1 82 0 491 272 89 28 chrX 106137044 106137224 -70836916 - MIR3 SINE MIR -8 200 10 290 275 130 0 chrX 106137592 106137707 -70836433 + MIR SINE MIR 15 131 -77 247 259 12 35 chrX 106139663 106139748 -70834392 + (CA)n Simple_repeat Simple_repeat 1 83 0 219 242 0 0 chrX 106145464 106145526 -70828614 + (CA)n Simple_repeat Simple_repeat 1 62 0 209 237 42 102 chrX 106146220 106146338 -70827802 - L2 LINE L2 -10 3303 3193 2211 124 3 0 chrX 106147319 106147625 -70826515 - AluSx SINE Alu -5 307 1 862 278 28 0 chrX 106148705 106148953 -70825187 + MIR SINE MIR 8 262 0 261 278 67 33 chrX 106149087 106149177 -70824963 - MIR3 SINE MIR -10 198 106 2230 124 138 5 chrX 106149660 106150038 -70824102 + MSTA LTR MaLR 1 428 0 276 188 141 0 chrX 106150583 106150668 -70823472 - L1ME4a LINE L1 -69 6052 5956 822 279 55 7 chrX 106150701 106150991 -70823149 - L1ME4a LINE L1 -218 5903 5600 278 270 126 9 chrX 106151849 106151914 -70822226 - L2 LINE L2 -9 3263 3207 414 0 0 0 chrX 106151914 106151960 -70822180 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 278 270 126 9 chrX 106151960 106152005 -70822135 - L2 LINE L2 -65 3207 3140 259 220 17 0 chrX 106152171 106152230 -70821910 - L2 LINE L2 -1059 2255 2196 290 336 16 25 chrX 106152551 106152673 -70821467 + L2 LINE L2 3150 3270 -2 198 303 5 113 chrX 106152796 106153006 -70821134 - MIR SINE MIR -50 212 25 232 298 65 32 chrX 106155634 106155758 -70818382 - MIR SINE MIR -106 156 29 2174 108 10 3 chrX 106156055 106156352 -70817788 - AluSq SINE Alu -14 299 1 201 147 0 0 chrX 106157957 106157991 -70816149 + (T)n Simple_repeat Simple_repeat 1 34 0 216 315 105 28 chrX 106158910 106159053 -70815087 - L3b LINE CR1 -10 1573 1420 255 133 0 0 chrX 106160360 106160405 -70813735 + (CCA)n Simple_repeat Simple_repeat 3 47 0 286 297 42 34 chrX 106162537 106162655 -70811485 + MIR SINE MIR 20 138 -124 1858 122 4 0 chrX 106163727 106163981 -70810159 + AluSx SINE Alu 1 255 -57 935 101 22 0 chrX 106163981 106164120 -70810020 + AluSg/x SINE Alu 169 310 0 268 292 32 39 chrX 106164283 106164437 -70809703 - L1MC/D LINE L1 -1918 5890 5738 735 179 0 0 chrX 106164448 106164565 -70809575 + FLAM_A SINE Alu 8 124 -18 1859 133 23 0 chrX 106165639 106165947 -70808193 + L1MB4 LINE L1 5854 6168 -12 303 71 0 0 chrX 106165947 106165989 -70808151 + (CA)n Simple_repeat Simple_repeat 1 42 0 468 193 61 18 chrX 106166092 106166206 -70807934 - Charlie8 DNA MER1_type -2225 192 74 224 57 0 29 chrX 106166764 106166799 -70807341 + (CA)n Simple_repeat Simple_repeat 1 34 0 571 299 55 9 chrX 106167725 106167942 -70806198 + MIR SINE MIR 20 246 -16 355 294 159 8 chrX 106168131 106168257 -70805883 + MIR SINE MIR 47 191 -71 2345 94 3 3 chrX 106168367 106168665 -70805475 - AluSq SINE Alu -15 298 1 224 323 0 71 chrX 106168950 106169105 -70805035 + L2 LINE L2 2910 3053 -219 34 42 0 0 chrX 106169191 106169239 -70804901 + AT_rich Low_complexity Low_complexity 1 48 0 260 250 0 18 chrX 106169359 106169415 -70804725 + L3 LINE CR1 1502 1556 -21 239 271 102 42 chrX 106169773 106169891 -70804249 + MIR SINE MIR 8 132 -130 * 471 278 32 8 chrX 106169889 106170015 -70804125 - L2 LINE L2 0 3313 3185 354 231 0 55 chrX 106170968 106171059 -70803081 + L2 LINE L2 3186 3271 -1 1031 73 0 0 chrX 106171176 106171299 -70802841 - AluSg SINE Alu -187 123 1 32 0 0 0 chrX 106171435 106171467 -70802673 + AT_rich Low_complexity Low_complexity 1 32 0 314 239 0 34 chrX 106171728 106171816 -70802324 + MIR SINE MIR 68 152 -110 714 314 71 36 chrX 106172735 106173146 -70800994 - MLT1K LTR MaLR -23 565 141 21 36 0 0 chrX 106173865 106173893 -70800247 + AT_rich Low_complexity Low_complexity 1 28 0 2486 71 0 0 chrX 106173914 106174209 -70799931 - AluY SINE Alu -16 295 1 207 337 20 20 chrX 106174357 106174455 -70799685 - MIR3 SINE MIR -102 106 9 468 0 0 0 chrX 106175179 106175231 -70798909 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 322 192 60 108 chrX 106175260 106175302 -70798838 + MER103 DNA DNA 8 50 -116 1678 188 3 16 chrX 106175302 106175611 -70798529 + AluJo SINE Alu 1 305 -7 322 192 60 108 chrX 106175611 106175735 -70798405 + MER103 DNA DNA 50 166 0 183 240 160 40 chrX 106176045 106176120 -70798020 + MIR SINE MIR 173 256 -6 1478 177 23 20 chrX 106176249 106176548 -70797592 + L1MB2 LINE L1 5866 6165 -6 32 0 0 0 chrX 106176550 106176582 -70797558 + AT_rich Low_complexity Low_complexity 1 32 0 373 290 145 68 chrX 106176764 106177178 -70796962 + L2 LINE L2 2827 3272 0 1655 69 17 13 chrX 106177546 106177778 -70796362 - L1PA8 LINE L1 -1 6171 5939 241 347 34 14 chrX 106179897 106180044 -70794096 + L2 LINE L2 2127 2276 -1038 886 214 6 0 chrX 106180480 106180653 -70793487 + MER5B DNA MER1_type 1 174 -4 21 0 0 0 chrX 106180882 106180903 -70793237 + AT_rich Low_complexity Low_complexity 1 21 0 2070 66 8 12 chrX 106180907 106181164 -70792976 + AluSg SINE Alu 29 284 -26 213 65 0 0 chrX 106181167 106181198 -70792942 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2262 83 0 20 chrX 106181556 106181857 -70792283 - AluY SINE Alu -16 295 1 663 243 99 27 chrX 106182261 106182483 -70791657 + MIR SINE MIR 17 254 -8 2197 122 0 3 chrX 106182513 106182816 -70791324 + AluSx SINE Alu 1 302 -10 1459 247 40 43 chrX 106182905 106183392 -70790748 - L1MC3 LINE L1 0 8041 7572 1147 229 33 0 chrX 106183439 106183684 -70790456 + MIR SINE MIR 8 260 -2 378 0 0 0 chrX 106183927 106183969 -70790171 + (CA)n Simple_repeat Simple_repeat 2 43 0 1412 236 181 25 chrX 106183970 106184406 -70789734 + MLT1D LTR MaLR 2 505 0 1670 180 57 86 chrX 106185031 106185508 -70788632 + MLT1C LTR MaLR 4 466 -1 283 238 50 25 chrX 106185524 106185604 -70788536 - L2 LINE L2 -8 3264 3183 521 265 7 30 chrX 106186469 106186522 -70787618 - MIR3 SINE MIR -64 144 91 2492 42 0 48 chrX 106186522 106186834 -70787306 - AluY SINE Alu -14 297 1 521 265 7 30 chrX 106186834 106186985 -70787155 - MIR3 SINE MIR -117 91 2 309 325 82 76 chrX 106187827 106188296 -70785844 - L2 LINE L2 -81 3191 2712 1711 157 17 14 chrX 106188579 106188873 -70785267 - 7SLRNA srpRNA srpRNA -4 316 22 332 287 115 0 chrX 106188909 106189031 -70785109 - L2 LINE L2 -956 2358 2223 3929 119 213 129 chrX 106189336 106190618 -70783522 + pTR5 LTR ERV1 743 2438 0 278 345 18 36 chrX 106190836 106191029 -70783111 + L2 LINE L2 2791 2980 -292 191 211 0 0 chrX 106191039 106191077 -70783063 - L2 LINE L2 -6 3307 3270 76 12 0 0 chrX 106191168 106191251 -70782889 + AT_rich Low_complexity Low_complexity 1 83 0 555 195 127 17 chrX 106192105 106192223 -70781917 - MER58C DNA MER1_type -1 214 84 315 0 0 0 chrX 106192227 106192262 -70781878 + (CA)n Simple_repeat Simple_repeat 2 36 0 750 310 106 13 chrX 106193537 106193934 -70780206 + MLT1J2 LTR MaLR 17 450 0 364 287 81 11 chrX 106193943 106194117 -70780023 + L2 LINE L2 3124 3309 -4 2573 54 0 16 chrX 106194204 106194518 -70779622 - AluY SINE Alu -2 309 1 412 305 31 8 chrX 106196683 106196811 -70777329 + MIR SINE MIR 76 206 -56 312 341 67 17 chrX 106198868 106199047 -70775093 - MIR3 SINE MIR -5 203 16 1344 221 157 6 chrX 106199942 106200267 -70773873 + MLT1A2 LTR MaLR 1 374 0 406 276 17 17 chrX 106200275 106200391 -70773749 + L2 LINE L2 3198 3313 0 595 248 22 74 chrX 106201371 106201533 -70772607 + MIR SINE MIR 45 193 -69 2197 106 0 0 chrX 106201533 106201826 -70772314 - AluSx SINE Alu -19 293 1 595 248 22 74 chrX 106201826 106201893 -70772247 + MIR SINE MIR 193 262 0 22 0 0 0 chrX 106201893 106201915 -70772225 + AT_rich Low_complexity Low_complexity 1 22 0 504 35 26 61 chrX 106202061 106202175 -70771965 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 2257 86 30 0 chrX 106202179 106202481 -70771659 - AluSq SINE Alu -2 311 1 213 323 82 20 chrX 106202506 106202701 -70771439 - L2 LINE L2 -1059 2255 2049 988 189 0 37 chrX 106202757 106202947 -70771193 - AluJb SINE Alu -23 289 107 1914 55 21 0 chrX 106202951 106203186 -70770954 + L1PA13 LINE L1 5924 6163 0 207 162 0 0 chrX 106203463 106203500 -70770640 + CT-rich Low_complexity Low_complexity 4 40 0 2086 138 3 0 chrX 106203506 106203810 -70770330 - AluSx SINE Alu -7 305 1 2285 99 0 13 chrX 106205042 106205211 -70768929 - AluSg SINE Alu -10 300 135 2325 85 0 13 chrX 106205211 106205518 -70768622 - AluY SINE Alu -8 303 1 2285 99 0 13 chrX 106205518 106205652 -70768488 - AluSg SINE Alu -175 135 1 2240 74 3 3 chrX 106207605 106207922 -70766218 + AluSg SINE Alu 1 310 0 212 147 0 0 chrX 106208033 106208067 -70766073 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chrX 106208069 106208094 -70766046 + (TG)n Simple_repeat Simple_repeat 1 25 0 1755 162 7 0 chrX 106208131 106208409 -70765731 - AluSx SINE Alu -32 280 1 252 286 0 0 chrX 106208922 106208985 -70765155 - L2 LINE L2 -1 3312 3250 277 205 13 13 chrX 106209881 106209959 -70764181 + T-rich Low_complexity Low_complexity 5 82 0 2534 78 0 0 chrX 106211316 106211624 -70762516 - AluSx SINE Alu -4 308 1 208 306 0 0 chrX 106211708 106211757 -70762383 - L2 LINE L2 -15 3257 3209 21 0 0 0 chrX 106212665 106212686 -70761454 + AT_rich Low_complexity Low_complexity 1 21 0 3730 157 6 14 chrX 106213016 106213646 -70760494 + L1MB2 LINE L1 5544 6168 -3 416 262 35 21 chrX 106213651 106213796 -70760344 - MER103 DNA DNA -18 148 2 2092 87 4 8 chrX 106214017 106214282 -70759858 + AluSq SINE Alu 26 289 -24 290 228 129 13 chrX 106214359 106214454 -70759686 - MER5B DNA MER1_type 0 178 84 852 271 35 16 chrX 106215443 106215698 -70758442 + MIR SINE MIR 3 262 0 30 45 0 0 chrX 106215921 106215965 -70758175 + AT_rich Low_complexity Low_complexity 1 44 0 384 298 10 0 chrX 106216608 106216712 -70757428 - L2 LINE L2 0 3272 3168 508 274 132 10 chrX 106216957 106217161 -70756979 - MLT1L LTR MaLR -82 533 305 489 264 60 66 chrX 106217404 106217496 -70756644 + MIR SINE MIR 72 164 -98 2416 72 3 0 chrX 106217496 106217801 -70756339 + AluY SINE Alu 1 306 -5 489 264 60 66 chrX 106217801 106217890 -70756250 + MIR SINE MIR 164 252 -10 486 301 97 9 chrX 106218417 106218633 -70755507 + MIR SINE MIR 28 262 0 2492 66 0 3 chrX 106218680 106218984 -70755156 + AluY SINE Alu 1 303 -8 2068 94 10 48 chrX 106219050 106219359 -70754781 + AluSx SINE Alu 1 297 -15 487 115 0 42 chrX 106219359 106219455 -70754685 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 180 351 75 0 chrX 106219464 106219558 -70754582 - MIR3 SINE MIR -95 113 13 338 326 0 0 chrX 106219818 106219913 -70754227 + L2 LINE L2 3219 3313 0 2349 40 25 0 chrX 106219926 106220225 -70753915 - AluY SINE Alu 0 306 1 1304 101 0 0 chrX 106220226 106220394 -70753746 - AluSx SINE Alu -10 302 135 2254 116 0 0 chrX 106220397 106220690 -70753450 - AluSx SINE Alu -19 293 1 2156 115 7 3 chrX 106220890 106221195 -70752945 - AluSg SINE Alu -4 306 1 445 188 0 0 chrX 106221503 106221583 -70752557 + MER5A DNA MER1_type 1 80 -109 1085 93 0 0 chrX 106221641 106221780 -70752360 - AluSx SINE Alu -173 139 1 418 304 37 22 chrX 106222401 106222536 -70751604 - L2 LINE L2 -20 3252 3116 1321 221 120 11 chrX 106223501 106223850 -70750290 + MSTD LTR MaLR 1 387 -9 6895 154 90 40 chrX 106223905 106226058 -70748082 + L1MC/D LINE L1 12 2423 -4003 2238 157 105 32 chrX 106226053 106226123 -70748017 + L1MC/D LINE L1 5473 5536 -1077 * 2370 101 0 0 chrX 106226123 106226421 -70747719 + AluSx SINE Alu 1 298 -14 2238 157 105 32 chrX 106226421 106226496 -70747644 + L1MC/D LINE L1 5536 5604 -1009 2024 141 0 3 chrX 106226496 106226793 -70747347 + AluSx SINE Alu 1 296 -16 2238 157 105 32 chrX 106226793 106227194 -70746946 + L1MC/D LINE L1 5604 6055 -558 186 325 157 0 chrX 106227452 106227535 -70746605 - L2 LINE L2 -34 3238 3143 435 181 67 27 chrX 106227798 106227947 -70746193 + L1MC5 LINE L1 7603 7757 -204 1977 136 10 3 chrX 106227947 106228242 -70745898 + AluSx SINE Alu 2 298 -14 212 154 0 26 chrX 106228242 106228281 -70745859 + GA-rich Low_complexity Low_complexity 1 38 0 304 246 24 56 chrX 106228358 106228484 -70745656 + L1MC5 LINE L1 7806 7927 -34 241 78 0 39 chrX 106229153 106229204 -70744936 + (CAAA)n Simple_repeat Simple_repeat 4 52 0 2148 80 23 27 chrX 106229358 106229657 -70744483 - AluSq SINE Alu -15 298 1 5433 161 52 12 chrX 106229891 106230931 -70743209 - L1MC3 LINE L1 -8 7777 6697 341 296 106 61 chrX 106230945 106230977 -70743163 + L2 LINE L2 2077 2106 -1208 1273 166 28 14 chrX 106230977 106231188 -70742952 - MER20 DNA MER1_type -4 215 2 341 296 106 61 chrX 106231188 106231419 -70742721 + L2 LINE L2 2106 2352 -962 1403 184 61 70 chrX 106231566 106231653 -70742487 + MER58B DNA MER1_type 2 88 -2332 1004 128 0 0 chrX 106231653 106231786 -70742354 - FLAM_C SINE Alu 0 133 1 1403 184 61 70 chrX 106231786 106232041 -70742099 + MER58B DNA MER1_type 88 341 0 295 306 93 27 chrX 106232117 106232300 -70741840 - LTR40b LTR ERVL -133 329 135 655 361 44 6 chrX 106232507 106232823 -70741317 + L2 LINE L2 2395 2722 -592 564 233 134 35 chrX 106232950 106233152 -70740988 - MIR SINE MIR 0 262 41 2065 146 3 0 chrX 106233166 106233474 -70740666 - AluSx SINE Alu -3 309 1 824 220 44 6 chrX 106233990 106234172 -70739968 + MER5A DNA MER1_type 1 189 0 425 86 21 75 chrX 106234762 106234855 -70739285 - Tigger3(Golem) DNA MER2_type -2744 285 198 13570 50 2 1 chrX 106234855 106237914 -70736226 - L1PA6 LINE L1 -3 6151 3090 288 53 0 0 chrX 106239244 106239282 -70734858 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1897 112 41 0 chrX 106239282 106239427 -70734713 - AluSx SINE Alu -32 280 142 180 0 0 0 chrX 106239427 106239447 -70734693 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1897 112 41 0 chrX 106239447 106239569 -70734571 - AluSx SINE Alu -170 142 2 286 274 84 0 chrX 106239600 106239695 -70734445 + U6 snRNA snRNA 1 103 -4 394 284 44 25 chrX 106239741 106239945 -70734195 + L1M4 LINE L1 4022 4229 -1917 539 299 144 22 chrX 106240047 106240407 -70733733 + L1M4 LINE L1 4383 4785 -1361 2368 36 40 23 chrX 106240407 106240708 -70733432 - AluY SINE Alu -5 306 1 539 299 144 22 chrX 106240708 106240757 -70733383 + L1M4 LINE L1 4785 4827 -1319 951 305 80 41 chrX 106241686 106242203 -70731937 - L2 LINE L2 -2 3311 2779 1015 166 24 6 chrX 106242210 106242379 -70731761 + FRAM SINE Alu 1 166 -10 352 320 48 16 chrX 106242385 106242510 -70731630 - L2 LINE L2 -540 2774 2646 1296 168 53 80 chrX 106243070 106243369 -70730771 - MSTA LTR MaLR 0 452 188 20704 41 3 0 chrX 106243369 106246702 -70727438 - L1PA5 LINE L1 -6 6148 2810 1296 168 53 80 chrX 106246702 106246886 -70727254 - MSTA LTR MaLR -264 188 1 7107 168 13 14 chrX 106247095 106247693 -70726447 + L1PA11 LINE L1 3797 4394 -1780 273 57 0 0 chrX 106247693 106247728 -70726412 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 7107 168 13 14 chrX 106247728 106249699 -70724441 + L1PA11 LINE L1 4394 6018 -156 2387 94 0 0 chrX 106249349 106249648 -70724492 + AluSg SINE Alu 1 299 -11 2334 92 0 33 chrX 106249648 106249852 -70724288 + L1PB1 LINE L1 5978 6166 0 181 250 60 95 chrX 106251067 106251151 -70722989 + MIR SINE MIR 26 106 -102 1855 187 6 8 chrX 106251363 106251721 -70722419 + MLT1A1 LTR MaLR 9 365 0 2320 262 107 78 chrX 106253950 106254232 -70719908 - HAL1 LINE L1 -778 1729 1457 2627 48 0 3 chrX 106254232 106254544 -70719596 - AluY SINE Alu 0 311 1 2320 262 107 78 chrX 106254544 106255857 -70718283 - HAL1 LINE L1 -1050 1457 80 2224 106 0 0 chrX 106255857 106256160 -70717980 + AluSx SINE Alu 1 303 0 2320 262 107 78 chrX 106256160 106256243 -70717897 - HAL1 LINE L1 -2427 80 1 238 295 32 32 chrX 106256588 106256744 -70717396 - L1MC/D LINE L1 -2022 5786 5631 1753 185 27 14 chrX 106256804 106256976 -70717164 - AluJo SINE Alu -16 296 117 186 43 0 0 chrX 106256976 106256999 -70717141 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1753 185 27 14 chrX 106256999 106257118 -70717022 - AluJo SINE Alu -195 117 1 342 0 0 0 chrX 106257129 106257167 -70716973 + (TA)n Simple_repeat Simple_repeat 2 39 0 1958 156 0 0 chrX 106257173 106257455 -70716685 + AluSx SINE Alu 1 282 -30 1321 185 40 116 chrX 106257523 106257945 -70716195 + L1MDa LINE L1 18 407 -6133 815 174 0 0 chrX 106257945 106258066 -70716074 + AluJb SINE Alu 1 121 -191 597 205 0 0 chrX 106258066 106258193 -70715947 + (TATG)n Simple_repeat Simple_repeat 2 128 0 530 219 0 0 chrX 106258193 106258289 -70715851 + FRAM SINE Alu 1 93 -83 1599 65 0 0 chrX 106258289 106258488 -70715652 + L1PA8 LINE L1 5960 6158 -14 6588 118 29 15 chrX 106258488 106258811 -70715329 + L1MA1 LINE L1 4372 4689 -1613 354 23 0 0 chrX 106258811 106258854 -70715286 + (CA)n Simple_repeat Simple_repeat 2 44 0 6588 118 29 15 chrX 106258854 106260438 -70713702 + L1MA1 LINE L1 4689 6302 0 27 62 0 0 chrX 106260776 106260824 -70713316 + AT_rich Low_complexity Low_complexity 1 48 0 442 280 45 55 chrX 106260948 106261148 -70712992 + MIR SINE MIR 23 220 -42 1662 149 0 60 chrX 106262189 106262514 -70711626 + AluJb SINE Alu 1 307 0 228 220 0 51 chrX 106262938 106262997 -70711143 + MIR SINE MIR 114 169 -93 627 233 41 70 chrX 106263222 106263492 -70710648 - MIR SINE MIR 0 262 1 186 133 0 0 chrX 106263879 106263909 -70710231 + (TTTTC)n Simple_repeat Simple_repeat 2 31 0 259 282 0 14 chrX 106264100 106264171 -70709969 + CT-rich Low_complexity Low_complexity 1 70 0 2404 36 0 0 chrX 106264443 106264888 -70709252 - AluY SINE Alu 0 445 1 2626 45 0 3 chrX 106265215 106265526 -70708614 + AluY SINE Alu 1 310 -1 290 332 64 32 chrX 106266722 106266909 -70707231 + MER117 DNA MER1_type 5 197 0 1755 155 22 4 chrX 106267284 106267561 -70706579 - AluSx SINE Alu -30 282 1 767 236 6 24 chrX 106268471 106268636 -70705504 - MIR3 SINE MIR -17 191 30 528 314 77 62 chrX 106269332 106269785 -70704355 - L2 LINE L2 0 3272 2813 339 301 131 19 chrX 106269888 106270094 -70704046 + MIR SINE MIR 12 240 -22 250 183 0 70 chrX 106270111 106270182 -70703958 + CT-rich Low_complexity Low_complexity 2 67 0 880 337 104 38 chrX 106270827 106271459 -70702681 - L3 LINE CR1 -2 1575 902 294 351 14 14 chrX 106271481 106271629 -70702511 - L3 LINE CR1 -804 773 626 225 359 43 8 chrX 106271831 106271948 -70702192 - L3 LINE CR1 -1012 565 445 732 167 8 0 chrX 106272463 106272595 -70701545 + MIR SINE MIR 117 249 -13 284 200 27 27 chrX 106272866 106272941 -70701199 - MIR SINE MIR -80 182 108 915 101 22 22 chrX 106274867 106275046 -70699094 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 205 253 12 12 chrX 106275054 106275137 -70699003 + CT-rich Low_complexity Low_complexity 1 83 0 191 172 0 0 chrX 106275315 106275344 -70698796 + L2 LINE L2 3261 3289 -24 2139 137 0 3 chrX 106275361 106275674 -70698466 - AluSx SINE Alu 0 312 1 252 195 24 24 chrX 106275810 106275892 -70698248 - HAL1b LINE L1 -3 1345 1264 376 272 211 0 chrX 106275912 106276026 -70698114 + MIR SINE MIR 121 258 -4 201 203 14 101 chrX 106276287 106276356 -70697784 + MIR3 SINE MIR 145 207 -1 186 71 0 0 chrX 106276555 106276583 -70697557 + (T)n Simple_repeat Simple_repeat 1 28 0 2184 124 3 0 chrX 106276794 106277092 -70697048 + AluSq SINE Alu 1 299 -14 195 42 0 0 chrX 106277178 106277202 -70696938 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 888 222 6 125 chrX 106277437 106277460 -70696680 - AluSx SINE Alu -30 282 258 1696 158 44 70 chrX 106277460 106277845 -70696295 + THE1C LTR MaLR 1 375 0 888 222 6 125 chrX 106277845 106278141 -70695999 - AluSx SINE Alu -54 258 1 416 307 33 66 chrX 106278174 106278386 -70695754 + L2 LINE L2 2847 3051 -221 196 240 0 20 chrX 106279045 106279095 -70695045 + L2 LINE L2 3169 3217 -55 * 312 280 54 0 chrX 106279088 106279181 -70694959 + MIR SINE MIR 155 252 -10 441 0 0 0 chrX 106279181 106279230 -70694910 + (TG)n Simple_repeat Simple_repeat 2 50 0 1815 148 3 14 chrX 106279232 106279515 -70694625 - AluSx SINE Alu -32 280 1 369 329 38 19 chrX 106279611 106279769 -70694371 + MIR3 SINE MIR 25 185 -23 188 35 35 0 chrX 106279824 106279853 -70694287 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 300 299 96 21 chrX 106280578 106280733 -70693407 - L2 LINE L2 -7 3306 3133 1940 128 0 10 chrX 106280733 106281029 -70693111 + AluJb SINE Alu 3 295 -17 300 299 96 21 chrX 106281029 106281060 -70693080 - L2 LINE L2 -180 3133 3106 1080 310 124 60 chrX 106281377 106282744 -70691396 - L2 LINE L2 -15 3257 1791 189 0 0 0 chrX 106283127 106283148 -70690992 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 556 230 0 9 chrX 106283773 106283886 -70690254 + L2 LINE L2 3193 3304 -9 2354 81 0 3 chrX 106284212 106284509 -70689631 - AluY SINE Alu -14 297 2 948 335 142 25 chrX 106285074 106286174 -70687966 + L2 LINE L2 1992 3224 -89 410 229 38 119 chrX 106286299 106286509 -70687631 + MLT1J1 LTR MaLR 114 306 -140 407 258 21 0 chrX 106286621 106286714 -70687426 + L2 LINE L2 3173 3267 -5 300 27 0 0 chrX 106287229 106287266 -70686874 + (TG)n Simple_repeat Simple_repeat 2 38 0 2732 153 64 120 chrX 106287291 106287994 -70686146 - MER39 LTR ERV1 -3 704 1 528 284 68 42 chrX 106288800 106289036 -70685104 - MIR SINE MIR 0 262 21 305 290 47 114 chrX 106289039 106289232 -70684908 + L2 LINE L2 3022 3201 -71 191 279 98 0 chrX 106289236 106289297 -70684843 + MIR SINE MIR 87 153 -55 932 243 24 35 chrX 106289303 106289558 -70684582 - MER102b DNA MER1_type 0 341 90 2174 113 10 0 chrX 106289801 106290092 -70684048 + AluSx SINE Alu 1 294 -18 21 36 0 0 chrX 106290242 106290270 -70683870 + AT_rich Low_complexity Low_complexity 1 28 0 218 279 29 15 chrX 106290824 106290892 -70683248 + L3b LINE CR1 1414 1482 -101 193 255 0 0 chrX 106291520 106291567 -70682573 + L2 LINE L2 3214 3260 -12 2216 100 0 7 chrX 106291678 106291977 -70682163 + AluSq SINE Alu 1 297 -16 2228 99 10 0 chrX 106292556 106292849 -70681291 + AluSx SINE Alu 1 296 -16 441 283 21 60 chrX 106292865 106293056 -70681084 + MIR SINE MIR 5 187 -75 2528 46 0 10 chrX 106293056 106293361 -70680779 - AluY SINE Alu -9 302 1 441 283 21 60 chrX 106293361 106293402 -70680738 + MIR SINE MIR 187 228 -34 2243 99 3 0 chrX 106293928 106294254 -70679886 + AluSx SINE Alu 1 327 0 373 294 40 32 chrX 106294434 106294560 -70679580 + MIR3 SINE MIR 81 207 -1 262 313 45 35 chrX 106295768 106295966 -70678174 - L2 LINE L2 -2408 906 707 386 298 107 0 chrX 106295985 106296106 -70678034 - L2 LINE L2 -1 3312 3179 396 286 23 30 chrX 106296272 106296405 -70677735 - MIR SINE MIR -98 164 33 379 318 67 71 chrX 106296405 106296885 -70677255 + L1ME LINE L1 13 490 -5580 1707 201 26 10 chrX 106296989 106297373 -70676767 - L1MB7 LINE L1 -17 6167 5778 2241 266 78 36 chrX 106297380 106298705 -70675435 + L1ME LINE L1 477 1923 -4157 560 80 0 0 chrX 106298705 106298780 -70675360 + MADE1 DNA Mariner 4 78 -2 2241 266 78 36 chrX 106298780 106299401 -70674739 + L1ME LINE L1 1923 2516 -3564 1363 216 101 0 chrX 106299415 106299790 -70674350 + L1ME LINE L1 2584 2996 -3084 3231 150 39 24 chrX 106299798 106299932 -70674208 - L1MB1 LINE L1 -260 5908 5777 2420 84 0 7 chrX 106299932 106300240 -70673900 - AluSx SINE Alu -6 306 1 3231 150 39 24 chrX 106300240 106300720 -70673420 - L1MB1 LINE L1 -391 5777 5285 392 264 83 21 chrX 106300716 106300909 -70673231 - L1MB7 LINE L1 -344 5777 5573 * 1759 293 146 30 chrX 106300914 106301572 -70672568 + L2 LINE L2 1990 2570 -743 798 178 0 0 chrX 106301572 106301701 -70672439 + FLAM_C SINE Alu 1 129 -4 1759 293 146 30 chrX 106301701 106302119 -70672021 + L2 LINE L2 2570 3246 -67 1683 191 45 10 chrX 106302164 106302478 -70671662 + MLT1A1 LTR MaLR 1 325 -40 1899 161 6 29 chrX 106302478 106302794 -70671346 + AluJb SINE Alu 1 309 -3 438 122 14 0 chrX 106302811 106302885 -70671255 + HsTC2 DNA Tc2 1823 1897 -1 2041 121 7 0 chrX 106302914 106303232 -70670908 - AluSx SINE Alu 0 320 1 281 285 104 113 chrX 106303709 106303930 -70670210 - MIR SINE MIR -11 251 33 301 327 0 10 chrX 106305124 106305228 -70668912 - MIR SINE MIR -86 176 74 973 190 15 29 chrX 106306367 106306572 -70667568 - AluJ SINE Alu -3 309 108 2360 90 0 0 chrX 106306576 106306877 -70667263 + AluSq SINE Alu 1 301 -12 189 147 0 0 chrX 106306877 106306911 -70667229 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 264 59 0 0 chrX 106306938 106306972 -70667168 + (GGGGA)n Simple_repeat Simple_repeat 5 38 0 800 135 0 0 chrX 106306975 106307086 -70667054 - AluJ SINE Alu -201 111 1 1408 252 24 9 chrX 106307931 106308270 -70665870 + L1ME1 LINE L1 1326 1658 -4919 693 105 0 0 chrX 106308270 106308375 -70665765 + L1PB1 LINE L1 6046 6150 -1 1408 252 24 9 chrX 106308375 106308524 -70665616 + L1ME1 LINE L1 1658 6461 -116 2049 76 4 0 chrX 106308524 106308788 -70665352 + THE1B-int LTR MaLR 1316 1580 0 2337 107 48 25 chrX 106308788 106309144 -70664996 + THE1B LTR MaLR 1 364 0 5611 194 8 2 chrX 106309144 106310299 -70663841 - L1 LINE L1 -1369 4777 3616 2633 248 48 40 chrX 106310291 106311164 -70662976 - L1MDa LINE L1 -5035 1922 960 * 336 301 101 15 chrX 106311213 106311412 -70662728 - L1MDa LINE L1 -6633 226 11 4799 198 30 35 chrX 106311556 106312971 -70661169 - L1MB7 LINE L1 -16 6168 4760 1965 158 0 0 chrX 106312971 106313279 -70660861 + AluSx SINE Alu 1 308 0 4799 198 30 35 chrX 106313279 106313896 -70660244 - L1MB7 LINE L1 -1424 4760 4141 24 53 0 0 chrX 106313939 106313977 -70660163 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chrX 106315020 106315042 -70659098 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 106315383 106315414 -70658726 + AT_rich Low_complexity Low_complexity 1 31 0 205 351 142 43 chrX 106316289 106316500 -70657640 + L2 LINE L2 2829 3060 -212 359 261 37 75 chrX 106316604 106316738 -70657402 - L2 LINE L2 -8 3264 3136 22388 166 23 16 chrX 106317128 106319340 -70654800 + L1MA3 LINE L1 16 2210 -5513 2060 149 0 0 chrX 106319340 106319642 -70654498 - AluSx SINE Alu -8 304 3 22388 166 23 16 chrX 106319642 106321655 -70652485 + L1MA3 LINE L1 2210 4207 -3516 1848 182 0 3 chrX 106321655 106321963 -70652177 + AluJb SINE Alu 1 307 -5 22388 166 23 16 chrX 106321963 106322986 -70651154 + L1MA3 LINE L1 4207 5221 -2502 186 43 0 0 chrX 106322986 106323009 -70651131 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2309 88 0 0 chrX 106323012 106323296 -70650844 - AluSq SINE Alu -29 284 1 22388 166 23 16 chrX 106323296 106323799 -70650341 + L1MA3 LINE L1 5222 5720 -2003 1259 50 0 0 chrX 106323799 106323959 -70650181 + L1PA4 LINE L1 5994 6153 -2 22388 166 23 16 chrX 106323959 106325344 -70648796 + L1MA3 LINE L1 5720 7199 -524 9895 151 6 7 chrX 106325347 106327838 -70646302 + L1PA12 LINE L1 3664 6166 -2 1453 69 20 5 chrX 106327861 106328063 -70646077 + L1MA1 LINE L1 6059 6263 -39 3194 107 32 6 chrX 106328074 106328597 -70645543 + L1MA3 LINE L1 7188 7724 0 355 234 35 94 chrX 106328608 106328710 -70645430 + MER103 DNA DNA 4 94 -72 2707 23 0 3 chrX 106328710 106329017 -70645123 - AluY SINE Alu -5 306 1 355 234 35 94 chrX 106329017 106329085 -70645055 + MER103 DNA DNA 94 164 -2 204 417 75 5 chrX 106329270 106329469 -70644671 - L2 LINE L2 -534 2780 2568 461 296 56 7 chrX 106329768 106329910 -70644230 + MLT1F1 LTR MaLR 9 157 -385 791 141 35 14 chrX 106329918 106330060 -70644080 + L1PB4 LINE L1 6010 6154 -2 616 145 146 0 chrX 106330149 106330279 -70643861 + MLT1F1 LTR MaLR 174 339 -203 1163 261 40 5 chrX 106330279 106330674 -70643466 + L1ME1 LINE L1 2300 2708 -3438 2442 221 72 31 chrX 106330681 106331591 -70642549 + L1ME1 LINE L1 4838 5880 -286 1243 191 19 0 chrX 106331591 106331801 -70642339 + MER20 DNA MER1_type 3 216 -3 2442 221 72 31 chrX 106331801 106332055 -70642085 + L1ME1 LINE L1 5880 6122 -44 1994 133 0 7 chrX 106332246 106332546 -70641594 + AluSx SINE Alu 11 308 -4 264 85 21 0 chrX 106332738 106332785 -70641355 + Alu SINE Alu 255 302 0 186 171 0 0 chrX 106334625 106334666 -70639474 + CT-rich Low_complexity Low_complexity 1 41 0 320 145 65 16 chrX 106335135 106335149 -70638991 + MSTA LTR MaLR 364 376 -52 5400 101 17 26 chrX 106335149 106335307 -70638833 - L1MA2 LINE L1 0 7723 7565 419 0 0 19 chrX 106335307 106335359 -70638781 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1886 84 25 0 chrX 106335359 106335596 -70638544 - AluSc SINE Alu -29 280 38 5400 101 17 26 chrX 106335596 106336278 -70637862 - L1MA2 LINE L1 -156 7567 6890 320 145 65 16 chrX 106336278 106336325 -70637815 + MSTA LTR MaLR 376 428 0 12658 166 53 16 chrX 106336325 106340248 -70633892 - L1MA2 LINE L1 -1346 6219 15 23 0 0 0 chrX 106341862 106341885 -70632255 + AT_rich Low_complexity Low_complexity 1 23 0 228 321 0 37 chrX 106343121 106343202 -70630938 + L2 LINE L2 3014 3091 -181 7511 117 31 15 chrX 106343290 106344573 -70629567 + L1MA3 LINE L1 2305 3608 -3957 819 168 8 0 chrX 106344575 106344706 -70629434 + AluJb SINE Alu 164 295 -17 6742 187 79 31 chrX 106344706 106345785 -70628355 + L1MA3 LINE L1 3601 4626 -3098 782 185 0 0 chrX 106345785 106345920 -70628220 + AluJb SINE Alu 172 306 -6 6742 187 79 31 chrX 106345920 106348496 -70625644 + L1MA3 LINE L1 4626 7723 -1 21 57 0 0 chrX 106348497 106348532 -70625608 + AT_rich Low_complexity Low_complexity 1 35 0 1001 62 16 0 chrX 106348823 106348952 -70625188 + L1PA10 LINE L1 6034 6164 -4 308 213 181 55 chrX 106349136 106349263 -70624877 - L2 LINE L2 0 3313 3171 819 169 28 0 chrX 106349321 106349463 -70624677 + FRAM SINE Alu 1 143 -33 266 143 0 0 chrX 106349616 106349658 -70624482 - FLAM SINE Alu -11 122 81 2344 264 50 44 chrX 106349658 106349695 -70624445 - L2 LINE L2 -585 2729 2694 1226 195 66 79 chrX 106349695 106350074 -70624066 - MLT1A2 LTR MaLR 0 374 1 2344 264 50 44 chrX 106350074 106350584 -70623556 - L2 LINE L2 -620 2694 2189 1971 142 0 13 chrX 106350584 106350886 -70623254 + AluSg SINE Alu 1 298 -12 2344 264 50 44 chrX 106350886 106351017 -70623123 - L2 LINE L2 -1125 2189 2060 221 0 0 33 chrX 106351017 106351047 -70623093 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2344 264 50 44 chrX 106351047 106351182 -70622958 - L2 LINE L2 -1254 2060 1909 24 0 0 0 chrX 106351620 106351644 -70622496 + AT_rich Low_complexity Low_complexity 1 24 0 934 96 64 0 chrX 106351648 106351773 -70622367 + AluSq/x SINE Alu 1 133 -179 2345 94 0 0 chrX 106352503 106352800 -70621340 + AluSg SINE Alu 5 301 -9 4664 163 39 8 chrX 106352826 106353705 -70620435 + L1MC2 LINE L1 5439 6344 0 841 190 11 5 chrX 106353720 106353904 -70620236 + L1M4 LINE L1 3433 3617 -2529 * 18255 172 57 22 chrX 106353897 106357332 -70616808 + L1MA2 LINE L1 12 3715 -3850 2043 131 7 0 chrX 106357332 106357645 -70616495 - AluSx SINE Alu 0 315 1 18255 172 57 22 chrX 106357645 106359482 -70614658 + L1MA2 LINE L1 3715 5486 -2079 387 0 0 0 chrX 106359494 106359537 -70614603 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 4066 79 17 0 chrX 106359537 106360079 -70614061 - L1PA10 LINE L1 -21 6147 5597 6237 184 20 7 chrX 106360079 106361382 -70612758 + L1MA2 LINE L1 5471 6790 -775 2095 135 10 0 chrX 106361382 106361685 -70612455 + AluSq SINE Alu 1 306 -7 2148 137 0 13 chrX 106361768 106362082 -70612058 + AluSx SINE Alu 3 312 0 6367 84 15 44 chrX 106362103 106362365 -70611775 + L1MA2 LINE L1 6771 7039 -684 1832 143 0 17 chrX 106362365 106362652 -70611488 + AluJb SINE Alu 1 282 -30 6367 84 15 44 chrX 106362652 106363370 -70610770 + L1MA2 LINE L1 7039 7723 0 2135 206 7 2 chrX 106363380 106363821 -70610319 - L1MCb LINE L1 -2112 4452 4010 2602 242 31 9 chrX 106363833 106364611 -70609529 - L1MCb LINE L1 -3018 3546 2752 1735 181 0 0 chrX 106364630 106364918 -70609222 + AluJo SINE Alu 7 294 -18 347 121 33 11 chrX 106364920 106365011 -70609129 + (TA)n Simple_repeat Simple_repeat 2 94 0 485 236 70 0 chrX 106365012 106365169 -70608971 - L1MCb LINE L1 -3802 2762 2595 3307 88 2 32 chrX 106365197 106365564 -70608576 - L1PB1 LINE L1 -1 6150 5773 207 0 0 0 chrX 106365564 106365587 -70608553 + (TG)n Simple_repeat Simple_repeat 2 24 0 3307 88 2 32 chrX 106365587 106365603 -70608537 - L1PB1 LINE L1 -378 5773 5758 390 42 0 0 chrX 106365603 106365651 -70608489 + (CA)n Simple_repeat Simple_repeat 2 49 0 3307 88 2 32 chrX 106365651 106365764 -70608376 - L1PB1 LINE L1 -393 5758 5668 870 177 36 23 chrX 106365764 106365984 -70608156 - L1MCb LINE L1 -3954 2610 2388 1084 210 63 56 chrX 106365984 106366397 -70607743 + MLT2B1 LTR ERVL 1 460 -60 2409 78 0 3 chrX 106366397 106366693 -70607447 - AluSq SINE Alu -18 295 1 1084 210 63 56 chrX 106366693 106366747 -70607393 + MLT2B1 LTR ERVL 460 512 -8 3910 195 57 68 chrX 106366753 106367610 -70606530 - L1MCb LINE L1 -4185 2379 1514 838 78 9 0 chrX 106367610 106367725 -70606415 - L1PB2 LINE L1 -3 6148 6033 3910 195 57 68 chrX 106367725 106369204 -70604936 - L1MCb LINE L1 -5050 1514 7 2745 245 51 14 chrX 106369222 106370091 -70604049 - L1M4 LINE L1 -2720 3426 2518 1438 182 13 75 chrX 106370091 106370409 -70603731 + AluJo SINE Alu 1 298 -14 2745 245 51 14 chrX 106370409 106370481 -70603659 - L1M4 LINE L1 -3628 2518 2450 1303 225 3 25 chrX 106370483 106370768 -70603372 - MLT1B LTR MaLR 0 390 112 709 299 64 28 chrX 106370768 106371436 -70602704 - L1MEd LINE L1 -2699 3430 2739 1167 251 49 113 chrX 106371772 106371910 -70602230 - L1MEd LINE L1 -4840 1289 1144 1598 220 19 14 chrX 106371910 106372273 -70601867 - MLT1A1 LTR MaLR 0 365 1 1167 251 49 113 chrX 106372273 106372613 -70601527 - L1MEd LINE L1 -4985 1144 784 330 115 0 0 chrX 106372613 106372665 -70601475 + (TG)n Simple_repeat Simple_repeat 1 52 0 1167 251 49 113 chrX 106372665 106373385 -70600755 - L1MEd LINE L1 -5345 784 215 574 290 78 18 chrX 106373495 106373826 -70600314 + L1ME4a LINE L1 5562 5912 -209 2254 97 3 0 chrX 106374585 106374883 -70599257 + AluSx SINE Alu 1 299 -13 245 254 0 34 chrX 106375351 106375410 -70598730 + L2 LINE L2 3200 3256 -16 1356 179 43 36 chrX 106375921 106376200 -70597940 + AluJo SINE Alu 1 281 -31 616 190 22 17 chrX 106376278 106376457 -70597683 + CT-rich Low_complexity Low_complexity 1 180 0 313 65 0 22 chrX 106376459 106376505 -70597635 + (TC)n Simple_repeat Simple_repeat 1 45 0 2023 122 0 17 chrX 106376792 106377087 -70597053 + AluSx SINE Alu 1 290 -22 284 105 0 0 chrX 106377123 106377161 -70596979 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 436 147 172 80 chrX 106377171 106377334 -70596806 + MER5B DNA MER1_type 1 178 0 1947 121 7 4 chrX 106377655 106377928 -70596212 + AluSq SINE Alu 1 274 -39 217 128 26 39 chrX 106377946 106378024 -70596116 + (TA)n Simple_repeat Simple_repeat 1 77 0 857 212 7 7 chrX 106378200 106378351 -70595789 - MER8 DNA MER2_type -81 158 8 293 234 0 75 chrX 106378368 106378475 -70595665 - L1 LINE L1 -2392 3754 3656 354 194 0 0 chrX 106378565 106378637 -70595503 + (TTAGGG)n Simple_repeat Simple_repeat 5 76 0 2028 161 0 0 chrX 106379214 106379524 -70594616 + AluSx SINE Alu 3 312 0 188 309 12 25 chrX 106381374 106381455 -70592685 - MIR SINE MIR -110 98 19 181 404 0 30 chrX 106382203 106382302 -70591838 + MIR SINE MIR 54 149 -59 2382 93 0 6 chrX 106382437 106382748 -70591392 - AluSg SINE Alu 0 310 2 226 329 66 0 chrX 106382838 106382914 -70591226 - L2 LINE L2 -18 3254 3174 700 145 0 119 chrX 106383272 106383431 -70590709 + FLAM_A SINE Alu 1 140 -2 186 103 0 0 chrX 106383658 106383687 -70590453 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 195 129 0 0 chrX 106384196 106384227 -70589913 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 346 329 44 61 chrX 106384278 106384506 -70589634 - MIR SINE MIR -17 245 22 324 313 205 6 chrX 106384814 106384980 -70589160 + L3 LINE CR1 1374 1572 -5 256 321 81 103 chrX 106384992 106385263 -70588877 - L2 LINE L2 -25 3247 2983 1154 256 116 6 chrX 106385268 106385604 -70588536 - MLT1H1 LTR MaLR -8 547 175 27 0 0 0 chrX 106386331 106386358 -70587782 + AT_rich Low_complexity Low_complexity 1 27 0 2094 122 7 0 chrX 106386475 106386775 -70587365 + AluSx SINE Alu 14 339 0 24 0 0 0 chrX 106386775 106386799 -70587341 + AT_rich Low_complexity Low_complexity 1 24 0 315 122 0 0 chrX 106387208 106387257 -70586883 + (A)n Simple_repeat Simple_repeat 1 49 0 22 69 0 7 chrX 106387570 106387603 -70586537 + AT_rich Low_complexity Low_complexity 1 4294967294 -38 2094 120 3 0 chrX 106387603 106387886 -70586254 - AluSx SINE Alu -28 284 1 22 69 0 7 chrX 106387886 106387926 -70586214 + AT_rich Low_complexity Low_complexity -3 36 0 2136 111 3 13 chrX 106388195 106388493 -70585647 - AluSx SINE Alu -17 295 1 564 147 0 55 chrX 106388949 106389058 -70585082 + U13 snRNA snRNA 1 103 -1 4507 144 17 18 chrX 106389101 106389376 -70584764 + L1MB4 LINE L1 5303 5577 -603 2433 100 0 0 chrX 106389376 106389687 -70584453 + AluSx SINE Alu 1 311 -1 4507 144 17 18 chrX 106389687 106390290 -70583850 + L1MB4 LINE L1 5577 6180 0 2441 97 0 0 chrX 106390698 106391006 -70583134 - AluSg SINE Alu -2 308 1 410 279 84 16 chrX 106391204 106391394 -70582746 - MIR SINE MIR -8 254 52 2046 102 7 20 chrX 106393711 106394006 -70580134 + AluSx SINE Alu 11 301 -11 477 269 37 78 chrX 106394169 106394393 -70579747 + L2 LINE L2 3030 3243 -70 1385 157 74 60 chrX 106394393 106394813 -70579327 - LTR37A LTR ERV1 0 426 1 477 269 37 78 chrX 106394813 106394856 -70579284 + L2 LINE L2 3243 3286 -27 394 276 146 53 chrX 106394999 106395273 -70578867 + L2 LINE L2 2458 2768 -546 2317 96 0 0 chrX 106395273 106395565 -70578575 + AluSx SINE Alu 1 292 -20 394 276 146 53 chrX 106395565 106395612 -70578528 + L2 LINE L2 2768 2809 -505 1421 168 67 42 chrX 106395862 106396172 -70577968 + AluJo SINE Alu 1 312 0 1824 150 31 0 chrX 106396756 106397042 -70577098 + AluJo SINE Alu 1 295 -17 2209 115 0 3 chrX 106397363 106397667 -70576473 + AluSx SINE Alu 2 304 -8 805 159 7 40 chrX 106398324 106398475 -70575665 - FRAM SINE Alu -22 154 9 1146 149 0 70 chrX 106398968 106399027 -70575113 + AluJo SINE Alu 86 148 -164 1484 126 5 0 chrX 106399027 106399233 -70574907 + AluSg/x SINE Alu 85 291 -21 1146 149 0 70 chrX 106399233 106399388 -70574752 + AluJo SINE Alu 148 285 -27 231 304 98 29 chrX 106399409 106399511 -70574629 - L2 LINE L2 -12 3301 3193 24 32 0 0 chrX 106399511 106399542 -70574598 + AT_rich Low_complexity Low_complexity 1 31 0 863 171 27 0 chrX 106399697 106399843 -70574297 + FRAM SINE Alu 18 167 -9 215 348 43 58 chrX 106400063 106400201 -70573939 + L2 LINE L2 3137 3272 0 442 203 44 70 chrX 106400637 106400795 -70573345 - MER103 DNA DNA -10 156 3 1591 151 86 37 chrX 106400939 106401289 -70572851 + THE1C LTR MaLR 9 375 0 772 147 23 16 chrX 106401292 106401421 -70572719 - AluJb SINE Alu -178 134 5 2056 98 0 0 chrX 106401636 106401900 -70572240 + AluSq SINE Alu 1 264 -49 21 0 0 0 chrX 106402002 106402023 -70572117 + AT_rich Low_complexity Low_complexity 1 21 0 347 227 152 23 chrX 106402143 106402275 -70571865 - L1ME1 LINE L1 -5 6161 6013 13328 127 12 1 chrX 106402275 106405190 -70568950 + L1PA10 LINE L1 3247 6165 -3 412 302 19 5 chrX 106405197 106405409 -70568731 + L1M4 LINE L1 2617 2831 -3315 * 4091 226 36 71 chrX 106405408 106406823 -70567317 + L1M4 LINE L1 2 1367 -5175 751 214 0 0 chrX 106406825 106406970 -70567170 - MLT1B LTR MaLR 0 390 246 502 189 10 6 chrX 106406984 106407103 -70567037 - MSTD LTR MaLR -5 621 292 1859 166 60 65 chrX 106407414 106407879 -70566261 - MLT1C LTR MaLR -1 466 4 222 389 44 9 chrX 106408299 106408412 -70565728 + L2 LINE L2 3141 3257 -15 21 0 0 0 chrX 106408417 106408438 -70565702 + AT_rich Low_complexity Low_complexity 1 21 0 2081 84 4 0 chrX 106408463 106408726 -70565414 - AluY SINE Alu -21 290 27 24 53 0 0 chrX 106409094 106409132 -70565008 + AT_rich Low_complexity Low_complexity 1 38 0 32 0 0 0 chrX 106409317 106409349 -70564791 + AT_rich Low_complexity Low_complexity 1 32 0 4025 208 47 8 chrX 106409350 106411131 -70563009 - L1MB5 LINE L1 0 6174 4315 15544 147 17 7 chrX 106411596 106411691 -70562449 + L1PA14 LINE L1 1 94 -7487 2015 141 27 29 chrX 106411691 106412067 -70562073 - THE1C LTR MaLR 0 375 1 15544 147 17 7 chrX 106412067 106414488 -70559652 + L1PA14 LINE L1 94 2543 -5038 1041 150 69 5 chrX 106414487 106414762 -70559378 - L1PA12 LINE L1 -4382 3202 2906 * 1043 168 20 0 chrX 106414759 106414956 -70559184 - L1PA15-16 LINE L1 -4163 2686 2486 2109 111 3 3 chrX 106415003 106415356 -70558784 + L1PA14 LINE L1 2559 2911 -4670 6543 193 18 1 chrX 106415376 106417540 -70556600 + L1PA14 LINE L1 5412 7597 -2 4561 148 23 47 chrX 106417674 106418602 -70555538 - L1MC1 LINE L1 0 6333 5429 3756 176 31 12 chrX 106418621 106419421 -70554719 - L1MA9 LINE L1 -37 6275 5461 885 353 22 46 chrX 106419441 106419857 -70554283 + L2 LINE L2 2864 3269 -3 611 121 0 99 chrX 106421781 106421922 -70552218 + LTR7 LTR ERV1 1 127 -323 8133 99 2 16 chrX 106421954 106423228 -70550912 + HERVH LTR ERV1 1740 2995 -4718 923 120 7 0 chrX 106423207 106423357 -70550783 + HERVH LTR ERV1 3140 3290 -4423 * 3232 109 0 6 chrX 106423347 106423852 -70550288 + HERVH LTR ERV1 3492 3993 -3720 1216 99 0 6 chrX 106423854 106424035 -70550105 + HERVH LTR ERV1 4488 4667 -3046 * 4157 82 2 0 chrX 106424034 106424642 -70549498 + HERVH LTR ERV1 5772 6380 -1333 * 7213 96 57 4 chrX 106424615 106425741 -70548399 + HERVH LTR ERV1 6529 7713 0 1411 143 57 96 chrX 106425741 106426201 -70547939 + LTR7 LTR ERV1 1 442 -8 1741 198 127 21 chrX 106427358 106427736 -70546404 - MER47B DNA MER2_type 0 418 1 189 386 10 20 chrX 106427770 106427871 -70546269 - L2 LINE L2 -10 3262 3163 279 287 0 0 chrX 106427925 106428012 -70546128 + L1ME3A LINE L1 92 178 -6027 390 313 15 19 chrX 106428098 106428357 -70545783 + L1ME3A LINE L1 1412 1669 -4727 241 279 38 25 chrX 106428733 106428812 -70545328 - L2 LINE L2 -201 3071 2992 344 100 0 0 chrX 106429058 106429108 -70545032 - MLT2B3 LTR ERVL -2 518 469 313 149 0 27 chrX 106429116 106429190 -70544950 + (TA)n Simple_repeat Simple_repeat 2 73 0 472 109 0 63 chrX 106429217 106429391 -70544749 + (TA)n Simple_repeat Simple_repeat 1 163 0 213 163 23 0 chrX 106429408 106429451 -70544689 + (TA)n Simple_repeat Simple_repeat 2 45 0 1577 191 58 41 chrX 106429451 106429880 -70544260 - MLT2B3 LTR ERVL -40 514 1 312 150 68 61 chrX 106429880 106430027 -70544113 - Charlie7 DNA MER1_type -33 2579 2432 1835 160 0 3 chrX 106430143 106430425 -70543715 - AluJo SINE Alu -31 281 1 751 258 80 78 chrX 106430425 106430902 -70543238 - Charlie7 DNA MER1_type -1879 733 256 230 333 0 0 chrX 106430903 106431014 -70543126 + L1ME LINE L1 5771 5881 -289 1920 185 8 3 chrX 106431050 106431406 -70542734 + L1M1 LINE L1 1069 1426 -6139 23 33 0 0 chrX 106431440 106431470 -70542670 + AT_rich Low_complexity Low_complexity 1 30 0 35 24 0 0 chrX 106431518 106431560 -70542580 + AT_rich Low_complexity Low_complexity 1 42 0 453 324 37 25 chrX 106431560 106431801 -70542339 + HAL1 LINE L1 1403 1646 -861 26 0 0 0 chrX 106431989 106432015 -70542125 + AT_rich Low_complexity Low_complexity 1 26 0 426 269 76 18 chrX 106432054 106432225 -70541915 + L1ME3A LINE L1 2945 3125 -3090 1969 236 28 32 chrX 106432370 106432900 -70541240 + MER74A LTR ERVL 1 528 -30 1988 141 3 32 chrX 106432948 106433260 -70540880 + AluSx SINE Alu 1 303 -9 769 253 82 78 chrX 106433484 106433612 -70540528 + L1ME3A LINE L1 3161 3287 -2928 2048 140 0 19 chrX 106433612 106433920 -70540220 + AluSx SINE Alu 3 304 -8 769 253 82 78 chrX 106433920 106434317 -70539823 + L1ME3A LINE L1 3287 3688 -2527 192 141 28 42 chrX 106434360 106434431 -70539709 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 310 261 46 7 chrX 106434432 106434585 -70539555 + L1ME3A LINE L1 3865 4023 -2192 399 314 54 29 chrX 106434687 106435037 -70539103 + L1ME3A LINE L1 5576 5934 -305 782 345 21 0 chrX 106435247 106435572 -70538568 + L2 LINE L2 2231 2562 -752 546 179 94 0 chrX 106435569 106435675 -70538465 - L2 LINE L2 -795 2519 2404 * 2480 94 0 0 chrX 106436177 106436485 -70537655 + AluSx SINE Alu 2 309 -3 326 239 102 42 chrX 106437159 106437326 -70536814 - MLT1J LTR MaLR 0 511 335 260 319 86 37 chrX 106437447 106437610 -70536530 - MLT1J LTR MaLR -340 171 1 289 254 42 0 chrX 106438291 106438362 -70535778 - MIR SINE MIR -130 132 59 2207 200 4 0 chrX 106439767 106440218 -70533922 + L1P LINE L1 4883 5335 -811 * 3316 174 29 27 chrX 106440213 106441305 -70532835 + L1PB3 LINE L1 4673 5766 -388 7750 147 22 5 chrX 106441305 106443421 -70530719 + L1PA11 LINE L1 4023 6166 -8 3316 174 29 27 chrX 106443421 106443594 -70530546 + L1PB3 LINE L1 5766 5937 -217 12503 189 78 3 chrX 106443626 106448600 -70525540 + L1PBa LINE L1 35 5383 -1479 2601 256 95 12 chrX 106448621 106449668 -70524472 - L1MD2 LINE L1 -2 6182 5014 756 309 5 5 chrX 106449668 106449891 -70524249 - MER58A DNA MER1_type 0 224 2 2601 256 95 12 chrX 106449891 106450071 -70524069 - L1MD2 LINE L1 -1170 5014 4850 1775 169 10 13 chrX 106450081 106450389 -70523751 - MLT1A1 LTR MaLR -30 335 29 2185 118 28 52 chrX 106450390 106450814 -70523326 + L1MA8 LINE L1 5878 6291 0 259 163 0 0 chrX 106450827 106450870 -70523270 - MLT1A1 LTR MaLR -322 43 1 1377 209 15 12 chrX 106450874 106451200 -70522940 - L1MD2 LINE L1 -1300 4846 4520 1527 276 38 13 chrX 106451201 106451650 -70522490 + LTR16B LTR ERVL 5 464 0 1480 238 79 14 chrX 106451650 106452016 -70522124 + Zaphod DNA AcHobo 269 658 -3373 269 148 197 28 chrX 106452173 106452315 -70521825 + Zaphod DNA AcHobo 847 1012 -3019 * 1308 229 32 0 chrX 106452302 106452647 -70521493 + Zaphod DNA AcHobo 3599 3954 -77 338 293 0 0 chrX 106452757 106452839 -70521301 + Zaphod DNA AcHobo 3950 4031 0 2166 118 0 16 chrX 106453299 106453605 -70520535 - AluSx SINE Alu -11 301 1 373 263 37 102 chrX 106453728 106454046 -70520094 - L1M LINE L1 -701 5420 5121 207 239 42 28 chrX 106454818 106454889 -70519251 + MIR SINE MIR 53 124 -138 212 322 0 35 chrX 106454988 106455075 -70519065 + L2 LINE L2 2108 2191 -1123 2097 131 3 0 chrX 106455193 106455499 -70518641 - AluSx SINE Alu -5 307 1 642 317 44 8 chrX 106457491 106457740 -70516400 - MIR SINE MIR 0 262 5 332 352 178 28 chrX 106457760 106458632 -70515508 - L2 LINE L2 -672 2642 1640 10134 23 1 1 chrX 106458638 106460626 -70513514 + L1PA4 LINE L1 4160 6152 -3 195 42 0 0 chrX 106460657 106460681 -70513459 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1462 164 0 105 chrX 106460726 106461049 -70513091 + AluJo SINE Alu 4 292 -20 2523 56 0 25 chrX 106461058 106461377 -70512763 + AluY SINE Alu 1 311 0 725 167 22 39 chrX 106461508 106461688 -70512452 - L1MA10 LINE L1 0 6334 6158 1322 196 0 0 chrX 106461699 106461954 -70512186 + L1 LINE L1 5025 5279 -867 257 325 8 48 chrX 106461959 106462052 -70512088 - MER5A DNA MER1_type -34 155 67 1761 155 46 49 chrX 106462052 106462401 -70511739 - MER7A DNA MER2_type 0 346 1 257 325 8 48 chrX 106462401 106462433 -70511707 - MER5A DNA MER1_type -122 67 35 709 236 15 5 chrX 106462445 106462640 -70511500 - MER20B DNA MER1_type 0 783 587 6474 125 41 18 chrX 106462643 106463665 -70510475 + MSTA-int LTR MaLR 535 1580 0 1870 124 187 11 chrX 106463665 106464029 -70510111 + MSTA LTR MaLR 1 428 0 226 204 20 0 chrX 106464029 106464078 -70510062 - MER20B DNA MER1_type -219 564 515 2531 152 65 0 chrX 106464190 106464619 -70509521 + MSTB2 LTR MaLR 1 457 0 1656 225 45 30 chrX 106464643 106465083 -70509057 - MER20B DNA MER1_type -274 509 63 1997 126 161 13 chrX 106465691 106466064 -70508076 + MSTA LTR MaLR 1 428 0 493 294 62 31 chrX 106466193 106466387 -70507753 + MIR SINE MIR 10 209 -53 2714 157 48 12 chrX 106466387 106466884 -70507256 + MER4D LTR ERV1 1 515 -388 4307 147 11 24 chrX 106466886 106467606 -70506534 + MER50 LTR ERV1 1 711 -23 2233 147 37 3 chrX 106467609 106467983 -70506157 + MER4D LTR ERV1 517 903 0 22 0 0 0 chrX 106468035 106468057 -70506083 + AT_rich Low_complexity Low_complexity 1 22 0 1143 221 81 26 chrX 106468157 106468466 -70505674 - MLT1F1 LTR MaLR 0 567 175 471 18 0 0 chrX 106468466 106468522 -70505618 + (GA)n Simple_repeat Simple_repeat 1 56 0 1143 221 81 26 chrX 106468522 106468697 -70505443 - MLT1F1 LTR MaLR -392 175 11 22 35 0 0 chrX 106469242 106469271 -70504869 + AT_rich Low_complexity Low_complexity 1 29 0 492 270 125 32 chrX 106469829 106470080 -70504060 - MIR SINE MIR 0 262 2 426 300 34 74 chrX 106470445 106470657 -70503483 + MLT1J2 LTR MaLR 58 248 -202 1111 226 0 13 chrX 106470657 106470883 -70503257 - MER58A DNA MER1_type 0 224 2 426 300 34 74 chrX 106470883 106471077 -70503063 + MLT1J2 LTR MaLR 248 448 -2 251 384 53 30 chrX 106471840 106471973 -70502167 - MER5A DNA MER1_type -11 178 43 203 387 0 0 chrX 106472326 106472401 -70501739 + L2 LINE L2 3154 3228 -44 3626 202 26 38 chrX 106472425 106472901 -70501239 + L1ME1 LINE L1 5220 5669 -497 2378 64 3 0 chrX 106472901 106473196 -70500944 + AluY SINE Alu 7 302 -9 3626 202 26 38 chrX 106473196 106473640 -70500500 + L1ME1 LINE L1 5669 6117 -49 653 146 0 0 chrX 106473799 106473895 -70500245 + FRAM SINE Alu 66 161 -15 417 260 41 32 chrX 106474220 106474343 -70499797 - L2 LINE L2 0 3313 3190 285 255 113 9 chrX 106474378 106474484 -70499656 + L1ME4a LINE L1 5536 5652 -469 1058 249 279 19 chrX 106474514 106475033 -70499107 + MLT1E1 LTR MaLR 1 654 0 254 143 0 82 chrX 106475269 106475318 -70498822 + LTR48B LTR ERV1 1 45 -599 1932 171 116 86 chrX 106475320 106475922 -70498218 + LTR48 LTR ERV1 166 785 -2 749 207 0 15 chrX 106475977 106476112 -70498028 + FLAM_A SINE Alu 1 133 0 742 128 25 4 chrX 106476112 106476371 -70497769 + GA-rich Low_complexity Low_complexity 1 264 0 291 191 127 9 chrX 106476386 106476496 -70497644 + L1ME4a LINE L1 5891 6013 -108 3706 121 24 3 chrX 106477253 106477834 -70496306 + LTR49 LTR ERV1 3 595 0 222 274 164 0 chrX 106477844 106477917 -70496223 - MER91A DNA MER1_type 0 196 112 21 0 0 0 chrX 106478417 106478438 -70495702 + AT_rich Low_complexity Low_complexity 1 21 0 252 372 21 21 chrX 106478649 106478794 -70495346 - L2 LINE L2 -3 3269 3125 24 53 0 0 chrX 106478857 106478895 -70495245 + AT_rich Low_complexity Low_complexity 1 38 0 2125 151 57 25 chrX 106479501 106479937 -70494203 + LTR7 LTR ERV1 1 450 0 232 333 16 0 chrX 106480931 106480994 -70493146 + L2 LINE L2 3208 3271 -1 3069 52 3 5 chrX 106481195 106481583 -70492557 - L1PA7 LINE L1 0 6154 5768 1931 195 2 18 chrX 106481594 106481988 -70492152 - L1MB1 LINE L1 -61 6107 5720 581 290 71 42 chrX 106482903 106482941 -70491199 - L2 LINE L2 -245 3068 3033 1500 202 7 7 chrX 106482941 106483228 -70490912 - AluJb SINE Alu -25 287 1 581 290 71 42 chrX 106483228 106483511 -70490629 - L2 LINE L2 -280 3033 2742 583 264 64 40 chrX 106483512 106483887 -70490253 - L1MC5 LINE L1 -32 7929 7546 4240 104 60 0 chrX 106484257 106484873 -70489267 + MER39B LTR ERV1 1 653 0 356 242 15 23 chrX 106484877 106485009 -70489131 - L1MC5 LINE L1 -737 7224 7094 984 279 81 7 chrX 106485037 106485335 -70488805 - L2 LINE L2 -565 2749 2430 1109 237 164 5 chrX 106485339 106485753 -70488387 - L1ME3A LINE L1 -101 6069 5590 3937 163 9 22 chrX 106485756 106486442 -70487698 + MER44D DNA MER2_type 2 678 -27 1391 187 76 58 chrX 106486496 106486839 -70487301 + MSTD LTR MaLR 1 349 -47 485 117 13 0 chrX 106487028 106487105 -70487035 + MSTD LTR MaLR 317 394 -2 1231 254 75 15 chrX 106487146 106487185 -70486955 - L1ME3A LINE L1 -647 5517 5482 180 77 0 0 chrX 106487185 106487211 -70486929 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1231 254 75 15 chrX 106487211 106487911 -70486229 - L1ME3A LINE L1 -682 5482 4738 3339 59 23 7 chrX 106487914 106488355 -70485785 + LTR7 LTR ERV1 1 448 -2 18944 101 37 19 chrX 106488357 106491290 -70482850 + HERVH LTR ERV1 1 2987 -4726 924 128 20 0 chrX 106491284 106491432 -70482708 + HERVH LTR ERV1 3140 3290 -4423 * 3523 90 4 10 chrX 106491422 106491934 -70482206 + HERVH LTR ERV1 3492 4000 -3713 * 4562 125 0 1 chrX 106491928 106492591 -70481549 + HERVH LTR ERV1 4488 5149 -2564 1422 117 19 0 chrX 106492594 106492808 -70481332 + HERVH LTR ERV1 5602 5819 -1894 * 2587 71 45 13 chrX 106492806 106493186 -70480954 + HERVH LTR ERV1 7322 7713 0 3154 55 46 16 chrX 106493186 106493621 -70480519 + LTR7 LTR ERV1 1 448 -2 1217 301 40 9 chrX 106493691 106494119 -70480021 - L2 LINE L2 -1064 2250 1810 1699 189 154 30 chrX 106494380 106494841 -70479299 + Charlie1b DNA MER1_type 6 523 0 487 246 175 0 chrX 106494941 106495124 -70479016 - MIR SINE MIR 0 262 48 725 213 53 0 chrX 106495286 106495436 -70478704 - FAM SINE Alu -17 158 1 911 291 66 39 chrX 106496811 106497326 -70476814 + MER34 LTR ERV1 1 529 -13 1787 105 11 21 chrX 106498635 106498921 -70475219 + L1PA16 LINE L1 1757 2039 -4810 2431 86 0 3 chrX 106498921 106499234 -70474906 + AluSx SINE Alu 1 312 0 14084 233 24 6 chrX 106499234 106503380 -70470760 + L1PA16 LINE L1 2150 6365 -504 2041 146 3 0 chrX 106503385 106503715 -70470425 + L1PA16 LINE L1 6530 6860 -9 203 204 19 0 chrX 106503723 106503777 -70470363 + A-rich Low_complexity Low_complexity 2 56 0 1140 224 16 8 chrX 106504026 106504280 -70469860 + MLT2C2 LTR ERVL 4 259 -205 904 217 5 5 chrX 106504287 106504485 -70469655 - L1P LINE L1 -1068 5078 4881 530 141 111 0 chrX 106504486 106504585 -70469555 + MLT2C2 LTR ERVL 292 401 -63 1722 156 43 33 chrX 106504590 106504930 -70469210 - AluJb SINE Alu 0 348 6 1528 161 3 7 chrX 106505271 106505556 -70468584 + L1MA5 LINE L1 6015 6298 -2 570 150 18 0 chrX 106505758 106505871 -70468269 - L1MA6 LINE L1 0 6300 6186 5288 120 15 11 chrX 106505892 106506748 -70467392 - L1MA2 LINE L1 0 6304 5445 361 159 72 0 chrX 106506749 106506818 -70467322 - L1M1 LINE L1 -7480 85 12 4947 169 39 12 chrX 106506822 106507325 -70466815 - L1MA6 LINE L1 -117 6183 5695 1490 205 29 0 chrX 106507325 106507623 -70466517 - AluJb SINE Alu 0 306 1 4947 169 39 12 chrX 106507623 106508309 -70465831 - L1MA6 LINE L1 -605 5695 4965 * 14527 202 65 9 chrX 106508300 106508425 -70465715 - L1PB1 LINE L1 -230 6637 6520 1221 106 0 0 chrX 106508425 106508605 -70465535 + (TA)n Simple_repeat Simple_repeat 1 180 0 14527 202 65 9 chrX 106508605 106514783 -70459357 - L1PB1 LINE L1 -347 6520 6 4247 141 18 6 chrX 106515156 106515285 -70458855 - HSMAR2 DNA Mariner 0 1302 1176 10469 191 12 0 chrX 106515285 106516511 -70457629 + L1PA13 LINE L1 3158 4368 -1795 288 0 0 0 chrX 106516511 106516543 -70457597 + (CA)n Simple_repeat Simple_repeat 1 32 0 10469 191 12 0 chrX 106516543 106518277 -70455863 + L1PA13 LINE L1 4368 6163 0 4247 141 18 6 chrX 106518277 106518855 -70455285 - HSMAR2 DNA Mariner -126 1176 586 3742 144 21 13 chrX 106518933 106519577 -70454563 - L1 LINE L1 -3791 3774 3120 2321 74 0 29 chrX 106519577 106519888 -70454252 + AluY SINE Alu 1 302 -9 3742 144 21 13 chrX 106519888 106520040 -70454100 - L1 LINE L1 -4445 3120 2971 333 296 0 0 chrX 106520053 106520141 -70453999 - L1MC4 LINE L1 -1340 6702 6615 238 250 11 11 chrX 106520168 106520256 -70453884 + L1MC4 LINE L1 6616 6703 -1339 2098 107 13 3 chrX 106520270 106520580 -70453560 + L1PB1 LINE L1 5782 6094 -57 2714 175 0 83 chrX 106621343 106622054 -70352086 + L1MA4 LINE L1 4797 5451 -743 299 0 0 0 chrX 106622054 106622087 -70352053 + U2 snRNA snRNA 1 33 -155 5008 139 9 6 chrX 106622087 106622439 -70351701 + L1MA4 LINE L1 5438 5787 -513 225 0 0 0 chrX 106622439 106622464 -70351676 + (CA)n Simple_repeat Simple_repeat 2 26 0 5008 139 9 6 chrX 106622464 106622959 -70351181 + L1MA4 LINE L1 5787 6288 -12 1475 179 72 4 chrX 106623099 106623398 -70350742 - AluJb SINE Alu 0 318 2 5187 182 51 94 chrX 106624165 106625223 -70348917 - L1 LINE L1 -1331 4815 3882 1216 79 56 11 chrX 106625223 106625401 -70348739 - L1PA12 LINE L1 -15 6153 5968 5187 182 51 94 chrX 106625401 106626355 -70347785 - L1 LINE L1 -2264 3882 2889 432 358 21 5 chrX 106626836 106627029 -70347111 - MIR SINE MIR -10 252 57 4910 224 34 7 chrX 106627131 106628254 -70345886 - L1MC3 LINE L1 -997 6788 5636 4674 179 40 13 chrX 106628249 106629217 -70344923 + L1MC3 LINE L1 6785 7778 -7 * 400 296 101 6 chrX 106629777 106629936 -70344204 - MIR SINE MIR -40 222 49 1167 313 97 51 chrX 106630357 106631224 -70342916 + L2 LINE L2 2266 3167 -146 492 360 53 4 chrX 106631295 106631523 -70342617 + MIR SINE MIR 6 244 -18 416 276 9 0 chrX 106631667 106631772 -70342368 + MIR SINE MIR 118 223 -39 268 327 36 27 chrX 106631915 106632025 -70342115 - MER5A DNA MER1_type -1 188 78 207 179 26 0 chrX 106632397 106632436 -70341704 + (TG)n Simple_repeat Simple_repeat 1 40 0 2475 63 0 0 chrX 106632466 106632767 -70341373 + AluY SINE Alu 1 301 -10 345 299 71 32 chrX 106633429 106633583 -70340557 + MIR SINE MIR 11 170 -92 467 249 47 26 chrX 106633640 106633833 -70340307 + L1PBa LINE L1 89 285 -6578 * 1349 209 60 9 chrX 106633829 106634145 -70339995 + L1PBa LINE L1 605 936 -5927 662 71 0 20 chrX 106634145 106634243 -70339897 + L1PB1 LINE L1 6049 6144 -7 204 323 160 38 chrX 106634442 106634786 -70339354 - L2 LINE L2 -346 2968 2583 2283 99 0 7 chrX 106635734 106636038 -70338102 + AluSq SINE Alu 1 302 -11 1452 290 87 60 chrX 106636582 106637509 -70336631 + HAL1 LINE L1 2 953 -1554 796 277 15 59 chrX 106637558 106637829 -70336311 + MIR SINE MIR 2 260 -2 1821 139 4 7 chrX 106637970 106638244 -70335896 + AluSx SINE Alu 1 273 -39 347 130 0 29 chrX 106638259 106638328 -70335812 + (GGGAA)n Simple_repeat Simple_repeat 3 69 0 2057 278 62 29 chrX 106638452 106638788 -70335352 + HAL1 LINE L1 1570 1893 -614 213 39 0 0 chrX 106638788 106638814 -70335326 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 2057 278 62 29 chrX 106638814 106639096 -70335044 + HAL1 LINE L1 1893 2164 -343 425 19 19 0 chrX 106639096 106639150 -70334990 + (TG)n Simple_repeat Simple_repeat 2 56 0 2057 278 62 29 chrX 106639150 106639433 -70334707 + HAL1 LINE L1 2164 2502 -5 21 0 0 0 chrX 106639994 106640015 -70334125 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 106640070 106640092 -70334048 + AT_rich Low_complexity Low_complexity 1 22 0 1582 160 34 72 chrX 106640283 106640687 -70333453 - L1M3 LINE L1 -588 5592 5199 24 67 0 0 chrX 106641081 106641126 -70333014 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chrX 106642068 106642098 -70332042 + AT_rich Low_complexity Low_complexity 1 30 0 2462 187 42 14 chrX 106642486 106643480 -70330660 + L1M3 LINE L1 4779 5795 -373 5928 133 40 1 chrX 106643482 106644412 -70329728 - HSMAR2 DNA Mariner -1 1301 336 201 196 0 0 chrX 106644740 106644786 -70329354 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 248 343 0 0 chrX 106645028 106645101 -70329039 - L2 LINE L2 0 3272 3200 568 306 153 9 chrX 106645167 106645389 -70328751 - MIR SINE MIR -1 261 8 702 223 64 100 chrX 106646190 106646599 -70327541 + L1MC4a LINE L1 5674 6067 -1741 3822 82 57 11 chrX 106646696 106647254 -70326886 + L1PA8A LINE L1 5520 6103 -28 295 253 59 74 chrX 106647426 106647628 -70326512 + L1ME3A LINE L1 1025 1223 -4896 1617 26 21 0 chrX 106648075 106648269 -70325871 + L1PA3 LINE L1 5958 6155 0 342 181 21 0 chrX 106648271 106648365 -70325775 + L1P LINE L1 3072 3167 -2979 2306 183 6 16 chrX 106648371 106648868 -70325272 + L1P LINE L1 3380 3871 -2275 318 87 0 0 chrX 106649572 106649618 -70324522 + (TG)n Simple_repeat Simple_repeat 2 47 0 1523 157 22 0 chrX 106649866 106650133 -70324007 + L1MA5 LINE L1 6027 6299 -1 430 263 33 52 chrX 106650478 106650691 -70323449 + L1ME3A LINE L1 4623 4831 -1298 631 254 60 111 chrX 106650818 106651152 -70322988 + MLT1I LTR MaLR 75 391 -18 519 218 155 18 chrX 106651361 106651627 -70322513 + L1ME3A LINE L1 5124 5462 -691 720 231 108 5 chrX 106651663 106651858 -70322282 + MER58C DNA MER1_type 1 215 0 423 0 0 0 chrX 106651868 106651915 -70322225 + (TG)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chrX 106651915 106651943 -70322197 + (GA)n Simple_repeat Simple_repeat 1 28 0 737 231 45 32 chrX 106651945 106652192 -70321948 + L1ME3A LINE L1 5671 5920 -233 674 333 78 33 chrX 106652310 106652774 -70321366 + L1M4 LINE L1 2354 2851 -3295 192 77 0 0 chrX 106652774 106652800 -70321340 + (TA)n Simple_repeat Simple_repeat 2 27 0 674 333 78 33 chrX 106652800 106652912 -70321228 + L1M4 LINE L1 2851 2956 -3190 307 236 106 43 chrX 106653072 106653233 -70320907 + L1MC5 LINE L1 7759 7929 -32 359 364 34 47 chrX 106653458 106653941 -70320199 + L2 LINE L2 2560 3041 -231 195 129 0 0 chrX 106654523 106654554 -70319586 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 1133 88 0 6 chrX 106655939 106656098 -70318042 - L1MA1 LINE L1 -4 6298 6141 366 333 18 36 chrX 106656114 106656282 -70317858 + L2 LINE L2 2622 2786 -528 307 303 13 0 chrX 106656449 106656525 -70317615 + L2 LINE L2 3193 3269 -44 220 393 104 36 chrX 106656577 106656992 -70317148 + L2 LINE L2 2825 3267 -5 332 275 0 14 chrX 106657495 106657564 -70316576 - Charlie8 DNA MER1_type -2349 68 1 438 318 37 33 chrX 106657745 106657959 -70316181 + MIR SINE MIR 4 218 -44 839 145 0 0 chrX 106658298 106658422 -70315718 + AluSq/x SINE Alu 1 124 -189 8936 41 3 1 chrX 106658987 106660056 -70314084 - MER11C LTR ERVK 0 1071 1 5478 151 21 22 chrX 106660182 106661406 -70312734 + L1MA4 LINE L1 5080 6300 0 566 265 13 7 chrX 106661640 106661791 -70312349 + MIR SINE MIR 2 153 -109 2051 139 48 3 chrX 106661860 106662192 -70311948 + MER7A DNA MER2_type 2 346 0 1100 144 102 0 chrX 106662234 106662421 -70311719 - MER2 DNA MER2_type -139 206 1 572 310 65 37 chrX 106662485 106662730 -70311410 - MIR SINE MIR -8 254 3 670 294 51 15 chrX 106663334 106663531 -70310609 + MIR SINE MIR 33 236 -26 6358 163 19 4 chrX 106663690 106665551 -70308589 + L1PA15 LINE L1 4106 5989 -172 537 94 12 0 chrX 106665553 106665638 -70308502 + L1PA15 LINE L1 6071 6156 -9 29 0 0 0 chrX 106665638 106665667 -70308473 + AT_rich Low_complexity Low_complexity 1 29 0 1307 197 32 36 chrX 106666070 106666379 -70307761 + MLT2D LTR ERVL 107 414 0 24 0 0 0 chrX 106666452 106666476 -70307664 + AT_rich Low_complexity Low_complexity 1 24 0 357 303 82 42 chrX 106666692 106666722 -70307418 - L1MC/D LINE L1 -468 5653 5626 197 65 32 0 chrX 106666722 106666753 -70307387 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1487 178 102 22 chrX 106666755 106667070 -70307070 - MER2 DNA MER2_type -2 342 3 357 303 82 42 chrX 106667070 106667415 -70306725 - L1MC/D LINE L1 -495 5626 5312 251 310 35 7 chrX 106667608 106667750 -70306390 - L1MC/D LINE L1 -1098 5048 4903 307 283 66 46 chrX 106667755 106667907 -70306233 - L1MC/D LINE L1 -1357 4789 4635 3963 181 54 37 chrX 106668169 106669000 -70305140 + Charlie5 DNA MER1_type 1 856 -1768 421 136 0 12 chrX 106669000 106669081 -70305059 - MADE1 DNA Mariner 0 80 1 3963 181 54 37 chrX 106669081 106669328 -70304812 + Charlie5 DNA MER1_type 856 1097 -1527 1705 291 66 24 chrX 106669376 106669950 -70304190 + L1M4c LINE L1 470 1067 -5236 2597 87 0 8 chrX 106669958 106670326 -70303814 - L1MA3 LINE L1 -356 5949 5585 968 252 31 18 chrX 106670326 106670612 -70303528 + L1M4c LINE L1 1483 1772 -4612 3553 48 2 2 chrX 106670637 106671076 -70303064 + L1PA7 LINE L1 5681 6119 -35 16021 26 0 0 chrX 106671176 106673703 -70300437 + L1PA2 LINE L1 3480 6006 -149 557 254 221 57 chrX 106673831 106674220 -70299920 + L2 LINE L2 2857 3309 -4 252 0 0 0 chrX 106674654 106674682 -70299458 + (CA)n Simple_repeat Simple_repeat 1 28 0 504 227 166 65 chrX 106675547 106675776 -70298364 - MIR SINE MIR 0 262 11 3583 209 19 7 chrX 106676394 106677242 -70296898 + L1M4c LINE L1 2809 3666 -2716 5988 140 18 20 chrX 106677301 106679154 -70294986 + L1MA2 LINE L1 4457 6304 0 566 318 37 37 chrX 106679167 106679491 -70294649 - L2 LINE L2 -849 2465 2142 1880 144 37 40 chrX 106680078 106680454 -70293686 + THE1C LTR MaLR 1 375 0 1257 233 126 43 chrX 106680930 106681470 -70292670 + MER34C LTR ERV1 1 585 0 812 178 108 54 chrX 106681631 106681872 -70292268 + LTR48 LTR ERV1 1 254 -533 810 221 101 39 chrX 106681840 106682098 -70292042 + LTR48 LTR ERV1 514 787 0 * 21 0 0 0 chrX 106682495 106682516 -70291624 + AT_rich Low_complexity Low_complexity 1 21 0 1155 243 100 44 chrX 106683575 106684065 -70290075 + MLT1E2 LTR MaLR 1 519 -107 441 313 68 12 chrX 106684191 106684354 -70289786 - L2 LINE L2 -575 2739 2568 347 118 0 0 chrX 106684361 106684412 -70289728 + MLT1E2 LTR MaLR 565 615 -39 454 266 133 6 chrX 106684578 106684736 -70289404 - MER5B DNA MER1_type 0 178 1 263 216 34 68 chrX 106685144 106685232 -70288908 - L2 LINE L2 0 3313 3229 229 111 0 0 chrX 106685293 106685338 -70288802 - LTR66 LTR ERVL -172 438 394 260 307 149 42 chrX 106685368 106685677 -70288463 - L2 LINE L2 -131 3182 2841 1462 96 0 0 chrX 106685785 106685973 -70288167 + AluSx SINE Alu 1 188 -124 1302 220 8 4 chrX 106686199 106686449 -70287691 - AluJo SINE Alu -17 295 45 14688 155 31 22 chrX 106686451 106688461 -70285679 + L1MA3 LINE L1 1013 3004 -4720 2039 116 0 36 chrX 106688461 106688763 -70285377 + AluSg SINE Alu 1 291 -19 14688 155 31 22 chrX 106688763 106688996 -70285144 + L1MA3 LINE L1 3004 3233 -4491 3815 44 0 8 chrX 106688996 106689472 -70284668 + L1PA5 LINE L1 5682 6153 -1 14688 155 31 22 chrX 106689472 106693867 -70280273 + L1MA3 LINE L1 3233 7724 0 1469 243 101 34 chrX 106693992 106694458 -70279682 + MLT1D LTR MaLR 1 497 -8 291 271 71 0 chrX 106694465 106694550 -70279590 - L1MB8 LINE L1 -25 6153 6063 5577 172 48 10 chrX 106694566 106695911 -70278229 - L1MC1 LINE L1 -18 6315 4924 935 201 0 0 chrX 106695918 106696087 -70278053 + L1M2 LINE L1 5625 5793 -519 467 26 52 0 chrX 106696099 106696176 -70277964 + (TA)n Simple_repeat Simple_repeat 1 81 0 406 347 25 20 chrX 106696182 106696378 -70277762 - MIR SINE MIR -58 204 8 2004 226 49 6 chrX 106696379 106696887 -70277253 + L1MD2 LINE L1 5828 6357 -2 1089 293 84 30 chrX 106696889 106697753 -70276387 + L1MEc LINE L1 989 1899 -4497 * 5382 254 32 50 chrX 106697749 106700307 -70273833 + L1M4 LINE L1 3 2686 -4452 * 7133 219 50 68 chrX 106700304 106702361 -70271779 + L1M4 LINE L1 3317 5408 -1581 234 0 0 0 chrX 106702361 106702387 -70271753 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 7133 219 50 68 chrX 106702387 106703179 -70270961 + L1M4 LINE L1 5408 6116 -873 1987 132 0 28 chrX 106703179 106703497 -70270643 + AluSc SINE Alu 1 309 0 7133 219 50 68 chrX 106703497 106703768 -70270372 + L1M4 LINE L1 6116 6390 -599 763 71 0 0 chrX 106703774 106703872 -70270268 + L1PA3 LINE L1 1 98 -6048 * 36900 37 26 1 chrX 106703841 106709274 -70264866 + L1PA3 LINE L1 580 6151 -4 21 0 0 0 chrX 106709274 106709295 -70264845 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chrX 106709304 106709330 -70264810 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 882 153 85 0 chrX 106709344 106709533 -70264607 + L1M4 LINE L1 6399 6603 -392 2251 244 117 45 chrX 106709539 106710292 -70263848 + MER21B LTR ERV1 5 811 -52 3067 210 27 19 chrX 106710322 106710998 -70263142 + MER21B-int LTR ERV1 2 682 -3509 1357 252 48 6 chrX 106711015 106711368 -70262772 + MER21B-int LTR ERV1 1269 1636 -2555 5769 161 12 6 chrX 106711437 106713170 -70260970 - L1PB2 LINE L1 -3 6148 4403 655 239 19 7 chrX 106713199 106713354 -70260786 + MER4B-int LTR ERV1 4537 4693 -2065 6556 207 30 24 chrX 106713387 106714766 -70259374 + MER4B-int LTR ERV1 1644 3030 -1161 402 265 0 10 chrX 106714811 106714909 -70259231 + MER21B LTR ERV1 276 372 -491 1679 267 44 11 chrX 106714928 106715478 -70258662 + L1ME2 LINE L1 5603 6332 -2 207 0 0 0 chrX 106715521 106715544 -70258596 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 730 328 94 56 chrX 106715680 106716374 -70257766 - L2 LINE L2 -210 3062 2339 1002 207 3 3 chrX 106716383 106716671 -70257469 - MLT1A1 LTR MaLR -2 363 1 4292 194 83 46 chrX 106716671 106716810 -70257330 - MLT1A1-int LTR MaLR 0 1735 1603 1894 97 7 0 chrX 106716810 106717089 -70257051 + L1MA2 LINE L1 6024 6304 0 4292 194 83 46 chrX 106717089 106718448 -70255692 - MLT1A1-int LTR MaLR -132 1603 4 1763 202 10 22 chrX 106718452 106718854 -70255286 - MLT1A1 LTR MaLR 0 375 7 203 233 33 33 chrX 106719209 106719269 -70254871 - L2 LINE L2 -4 3309 3250 21 0 0 0 chrX 106719797 106719818 -70254322 + AT_rich Low_complexity Low_complexity 1 21 0 2380 76 3 0 chrX 106719865 106720169 -70253971 - AluY SINE Alu -6 305 1 1993 139 0 19 chrX 106720670 106720980 -70253160 + AluSx SINE Alu 1 304 -8 6238 119 34 13 chrX 106720994 106722096 -70252044 - L1MA1 LINE L1 0 7721 6583 459 148 40 40 chrX 106722107 106722208 -70251932 + L1 LINE L1 5108 5208 -938 317 94 62 0 chrX 106722204 106722268 -70251872 - L1MA1 LINE L1 -4351 3214 3147 * 379 207 73 0 chrX 106722260 106722342 -70251798 - L1MA1 LINE L1 -7462 103 16 291 245 32 11 chrX 106722938 106723032 -70251108 - LTR49-int LTR ERV1 -4949 1382 1287 271 282 28 0 chrX 106723105 106723176 -70250964 - tRNA-Glu-GAG tRNA tRNA 0 75 3 512 245 153 15 chrX 106723177 106723373 -70250767 - LTR49-int LTR ERV1 -5122 1209 987 399 248 30 0 chrX 106723454 106723555 -70250585 + LTR49-int LTR ERV1 3264 3367 -2964 647 160 0 0 chrX 106723585 106723691 -70250449 + LTR49-int LTR ERV1 3348 3453 -2878 1957 207 65 64 chrX 106723877 106725432 -70248708 + LTR49-int LTR ERV1 1710 4622 -1709 3726 84 4 2 chrX 106725432 106725956 -70248184 - L1PA8 LINE L1 -877 5269 4745 7197 46 8 0 chrX 106725956 106726854 -70247286 + L1PA8 LINE L1 5267 6172 0 6850 184 58 35 chrX 106726881 106727871 -70246269 + LTR49-int LTR ERV1 4625 5671 -660 2962 178 28 69 chrX 106727871 106728592 -70245548 - LTR8 LTR ERV1 0 691 1 6850 184 58 35 chrX 106728592 106729261 -70244879 + LTR49-int LTR ERV1 5671 6323 -8 1409 171 79 129 chrX 106729264 106729848 -70244292 + LTR49 LTR ERV1 5 620 -33 3863 50 17 2 chrX 106730753 106731236 -70242904 - LTR2B LTR ERV1 0 490 1 1802 158 58 3 chrX 106731458 106731786 -70242354 - MER7A DNA MER2_type -1 345 2 14472 169 12 20 chrX 106732560 106737035 -70237105 - L1MA1 LINE L1 0 7721 3287 36040 55 3 0 chrX 106737092 106743227 -70230913 + L1PA5 LINE L1 1 6153 -1 2887 107 8 65 chrX 106743251 106743777 -70230363 - L1MA1 LINE L1 -4302 3263 2768 3185 190 62 78 chrX 106743800 106744617 -70229523 - L1MA1 LINE L1 -6747 818 15 468 176 27 49 chrX 106744776 106744906 -70229234 - MIR3 SINE MIR -6 202 74 205 339 37 37 chrX 106745016 106745125 -70229015 + L2 LINE L2 1302 1410 -1904 765 334 115 48 chrX 106745301 106746220 -70227920 + L2 LINE L2 1528 2523 -791 2287 141 37 46 chrX 106746220 106746654 -70227486 - MSTB1 LTR MaLR -2 430 1 765 334 115 48 chrX 106746654 106746754 -70227386 + L2 LINE L2 2523 2615 -699 * 1271 312 121 22 chrX 106746753 106747531 -70226609 - L2 LINE L2 -3 3310 2454 1212 196 0 14 chrX 106747643 106747863 -70226277 + MER20 DNA MER1_type 1 217 -2 209 243 0 0 chrX 106747870 106747907 -70226233 + L2 LINE L2 3014 3050 -222 488 273 56 14 chrX 106747998 106748141 -70225999 - MIR SINE MIR -112 150 2 465 308 53 0 chrX 106748223 106748356 -70225784 + L2 LINE L2 3126 3265 -7 2303 117 0 0 chrX 106750450 106750758 -70223382 + AluSx SINE Alu 1 308 -4 252 376 21 14 chrX 106751116 106751257 -70222883 - L2 LINE L2 -213 3059 2918 3952 107 53 14 chrX 106751352 106751971 -70222169 - MER39B LTR ERV1 -10 643 1 22 0 0 0 chrX 106752841 106752863 -70221277 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chrX 106753240 106753265 -70220875 + (TTA)n Simple_repeat Simple_repeat 2 26 0 393 372 76 41 chrX 106753563 106754004 -70220136 - L2 LINE L2 -768 2546 2081 1876 152 171 11 chrX 106754004 106754373 -70219767 - MSTA LTR MaLR 0 428 1 393 372 76 41 chrX 106754373 106754469 -70219671 - L2 LINE L2 -1233 2081 1990 669 90 0 0 chrX 106754599 106754688 -70219452 + AluSc SINE Alu 209 297 -12 1242 207 42 56 chrX 106755981 106756426 -70217714 - MLT1A1 LTR MaLR 0 365 1 450 303 170 6 chrX 106756426 106756591 -70217549 - MIR SINE MIR -60 202 11 264 246 0 0 chrX 106757882 106757939 -70216201 - L2 LINE L2 -2 3311 3255 6833 154 21 7 chrX 106758372 106760687 -70213453 - L1MA1 LINE L1 0 6302 3955 304 353 52 39 chrX 106760996 106761228 -70212912 - L2 LINE L2 -1092 2222 1988 546 68 0 0 chrX 106761232 106761306 -70212834 + L1MA1 LINE L1 6228 6301 -1 1971 333 105 20 chrX 106761610 106762873 -70211267 - L2 LINE L2 -43 3270 1897 207 319 69 28 chrX 106762932 106763004 -70211136 - L2 LINE L2 -2102 1212 1138 4309 122 49 20 chrX 106763018 106763726 -70210414 - L1PA16 LINE L1 -9 6157 5429 653 160 0 8 chrX 106763726 106763851 -70210289 - L1 LINE L1 -1307 4839 4716 372 369 49 49 chrX 106763851 106764404 -70209736 - L2 LINE L2 -2166 1148 596 1379 266 66 33 chrX 106764604 106765180 -70208960 - HAL1 LINE L1 -752 1755 1161 904 237 53 16 chrX 106765192 106765437 -70208703 + MIR SINE MIR 8 261 -1 555 282 138 82 chrX 106765464 106765561 -70208579 - HAL1 LINE L1 -1355 1152 1062 1289 141 39 0 chrX 106765561 106765795 -70208345 + L1MA9 LINE L1 6070 6312 0 555 282 138 82 chrX 106765795 106766700 -70207440 - HAL1 LINE L1 -1445 1062 94 636 284 84 72 chrX 106766707 106766957 -70207183 + MIR SINE MIR 10 262 0 786 299 71 46 chrX 106767219 106767596 -70206544 - MLT1L LTR MaLR -180 435 46 2281 112 0 0 chrX 106767596 106767899 -70206241 + AluSx SINE Alu 1 303 -9 786 299 71 46 chrX 106767899 106767932 -70206208 - MLT1L LTR MaLR -569 46 15 2456 74 7 3 chrX 106769110 106769420 -70204720 - AluSp SINE Alu -2 311 1 333 277 142 38 chrX 106769566 106769637 -70204503 + L3 LINE CR1 984 1046 -531 1938 204 5 14 chrX 106769637 106770005 -70204135 + MLT1A1 LTR MaLR 1 365 0 333 277 142 38 chrX 106770005 106770233 -70203907 + L3 LINE CR1 1046 1384 -193 350 286 58 32 chrX 106770428 106770617 -70203523 - L1ME3A LINE L1 -225 5945 5752 237 300 38 0 chrX 106770677 106770757 -70203383 - L1ME3A LINE L1 -2076 5732 5650 476 249 0 93 chrX 106770856 106771061 -70203079 - MER58C DNA MER1_type -10 205 20 255 323 31 23 chrX 106771073 106771203 -70202937 - L1ME3A LINE L1 -648 5516 5386 304 295 47 31 chrX 106771337 106771466 -70202674 + L1M4 LINE L1 5148 5278 -868 313 306 35 21 chrX 106771479 106771623 -70202517 + L3 LINE CR1 1426 1571 -6 455 263 63 40 chrX 106771655 106771830 -70202310 - MIR3 SINE MIR -9 199 21 198 0 0 0 chrX 106772752 106772774 -70201366 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2340 110 0 3 chrX 106774113 106774423 -70199717 - AluSp SINE Alu -4 309 1 255 336 8 42 chrX 106777878 106777997 -70196143 + L2 LINE L2 3158 3272 0 602 196 0 0 chrX 106778184 106778291 -70195849 + AluJb SINE Alu 134 240 -72 506 224 39 39 chrX 106778293 106778472 -70195668 + L1MC4a LINE L1 7628 7806 -2 1063 195 9 0 chrX 106778638 106778859 -70195281 - L1MA6 LINE L1 -25 6275 6053 3473 118 58 41 chrX 106778863 106779467 -70194673 + MER39B LTR ERV1 3 616 -37 2322 92 3 0 chrX 106779478 106779773 -70194367 - AluSp SINE Alu -17 296 1 2808 134 21 16 chrX 106779773 106780259 -70193881 - L1MA6 LINE L1 -471 5829 5342 3672 157 19 10 chrX 106781023 106781717 -70192423 - L1MA6 LINE L1 -796 5350 4651 338 296 12 53 chrX 106782361 106782530 -70191610 - L1ME LINE L1 -446 5675 5514 21 57 0 0 chrX 106782548 106782583 -70191557 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chrX 106782640 106782661 -70191479 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chrX 106782767 106782806 -70191334 + AT_rich Low_complexity Low_complexity 1 39 0 1058 183 65 22 chrX 106783076 106783417 -70190723 - L1MA4A LINE L1 -28 6277 5876 26 50 0 0 chrX 106783686 106783726 -70190414 + AT_rich Low_complexity Low_complexity 1 40 0 2163 134 0 3 chrX 106783795 106784108 -70190032 + AluSx SINE Alu 1 312 0 2449 221 62 26 chrX 106784476 106785141 -70188999 - L1ME1 LINE L1 -5 6161 5473 2204 106 0 0 chrX 106785191 106785509 -70188631 - AluSx SINE Alu 0 318 1 2131 179 76 12 chrX 106785518 106785993 -70188147 - L1MB8 LINE L1 0 6178 5668 1719 114 0 0 chrX 106785993 106786230 -70187910 - AluSg/x SINE Alu -7 305 69 2131 179 76 12 chrX 106786230 106786252 -70187888 - L1MB8 LINE L1 -510 5668 5649 2319 179 49 2 chrX 106786277 106786723 -70187417 - L1MC1 LINE L1 -31 6302 5836 581 250 26 56 chrX 106786726 106786912 -70187228 - L1ME LINE L1 -4576 1685 1506 2256 94 3 3 chrX 106786912 106787211 -70186929 - AluSg SINE Alu -11 299 1 581 250 26 56 chrX 106787211 106787256 -70186884 - L1ME LINE L1 -4755 1506 1461 1285 217 60 11 chrX 106787290 106787647 -70186493 - LTR43 LTR ERV1 -57 478 176 2532 77 0 3 chrX 106787969 106788282 -70185858 - AluSp SINE Alu -1 312 1 995 290 107 48 chrX 106788299 106789563 -70184577 - L1ME LINE L1 -4881 1201 2 1891 162 0 13 chrX 106789633 106789948 -70184192 - AluJo SINE Alu -1 311 1 32 26 0 0 chrX 106789983 106790022 -70184118 + AT_rich Low_complexity Low_complexity 1 39 0 1020 309 62 21 chrX 106790265 106790751 -70183389 - MLT1J LTR MaLR -4 507 2 51 65 0 0 chrX 106791114 106791207 -70182933 + AT_rich Low_complexity Low_complexity 1 93 0 4893 44 10 0 chrX 106791905 106792518 -70181622 - L1P LINE L1 -5526 620 2 5948 224 11 13 chrX 106792523 106793949 -70180191 - L1PA12 LINE L1 -3049 4535 3113 * 9338 179 11 8 chrX 106793936 106795681 -70178459 - L1PA12 LINE L1 -4805 2776 487 2509 177 5 0 chrX 106796311 106796707 -70177433 - L1PA12 LINE L1 -7082 499 102 334 343 108 0 chrX 106797805 106797907 -70176233 - L2 LINE L2 -18 3254 3142 1699 134 6 88 chrX 106798251 106798579 -70175561 + AluSq SINE Alu 3 303 -10 1845 162 0 7 chrX 106800841 106801138 -70173002 - AluJo SINE Alu -17 295 1 243 93 139 0 chrX 106801605 106801648 -70172492 + LTR1 LTR ERV1 1 49 -736 4114 113 41 101 chrX 106801653 106802488 -70171652 + LTR1 LTR ERV1 1 785 0 439 378 71 41 chrX 106802890 106803327 -70170813 - L2 LINE L2 -563 2751 2302 1133 225 9 102 chrX 106804034 106804367 -70169773 - AluJb SINE Alu 0 302 1 209 180 20 0 chrX 106804710 106804760 -70169380 + (CATA)n Simple_repeat Simple_repeat 4 54 0 608 337 178 22 chrX 106805852 106806386 -70167754 + L3 LINE CR1 915 1531 -46 24 53 0 0 chrX 106806926 106806964 -70167176 + AT_rich Low_complexity Low_complexity 1 38 0 211 135 27 0 chrX 106807568 106807605 -70166535 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 376 268 41 41 chrX 106807636 106807759 -70166381 - MLT1I LTR MaLR -81 328 206 1600 236 21 58 chrX 106808184 106808668 -70165472 - L1ME3A LINE L1 -6 6164 5699 376 240 0 0 chrX 106808669 106808744 -70165396 + MER69 DNA AcHobo 1 75 -2451 1392 138 20 4 chrX 106808825 106809072 -70165068 - L1MA2 LINE L1 -6 6298 6048 * 9731 96 4 0 chrX 106809068 106811185 -70162955 - L1PA8A LINE L1 -3 6128 3997 3147 124 4 6 chrX 106811188 106811710 -70162430 + L1P LINE L1 2656 3176 -2970 17850 183 49 32 chrX 106811721 106816077 -70158063 - L1 LINE L1 -3496 4069 17 1113 250 73 31 chrX 106816304 106817041 -70157099 - L1ME3A LINE L1 -467 5703 4942 575 288 50 7 chrX 106817143 106817424 -70156716 - L1ME3A LINE L1 -1815 4331 4039 546 290 171 4 chrX 106817431 106817683 -70156457 + L2 LINE L2 3020 3313 0 354 357 14 28 chrX 106817786 106817929 -70156211 - MIR3 SINE MIR -44 164 24 411 41 55 82 chrX 106818049 106818158 -70155982 - AluY SINE Alu 0 320 214 2860 189 109 38 chrX 106818617 106819381 -70154759 - LTR1B LTR ERV1 0 826 9 22 0 0 0 chrX 106819821 106819843 -70154297 + AT_rich Low_complexity Low_complexity 1 22 0 1978 250 111 46 chrX 106820422 106821293 -70152847 - L1ME3A LINE L1 -69 6101 5288 7170 50 3 2 chrX 106821293 106822615 -70151525 + L1PA7 LINE L1 4834 6154 0 1978 250 111 46 chrX 106822615 106822947 -70151193 - L1ME3A LINE L1 -882 5288 4804 2212 77 44 7 chrX 106822947 106823245 -70150895 - AluSp SINE Alu -2 311 3 1978 250 111 46 chrX 106823245 106823358 -70150782 - L1ME3A LINE L1 -1366 4804 4700 347 326 0 0 chrX 106823835 106823930 -70150210 + MER5A DNA MER1_type 94 188 -1 453 255 73 12 chrX 106823939 106824113 -70150027 + MER20 DNA MER1_type 1 219 0 189 339 18 89 chrX 106824389 106824557 -70149583 - MIR SINE MIR -10 252 97 2367 92 50 34 chrX 106824625 106824983 -70149157 - THE1B LTR MaLR 0 364 1 252 254 28 0 chrX 106825077 106825148 -70148992 - MIR SINE MIR -64 144 72 3088 220 37 47 chrX 106826057 106826560 -70147580 - L1MB8 LINE L1 -16 6162 5670 4411 58 0 12 chrX 106826560 106827128 -70147012 + L1PA8 LINE L1 5612 6172 0 3088 220 37 47 chrX 106827128 106827587 -70146553 - L1MB8 LINE L1 -508 5670 5208 180 288 68 0 chrX 106828312 106828371 -70145769 - MIR SINE MIR -124 138 76 3432 199 18 12 chrX 106829140 106829883 -70144257 - L1PB3 LINE L1 -2195 3951 3205 2789 166 18 2 chrX 106829879 106831954 -70142186 + L1PB3 LINE L1 3951 6154 0 * 255 79 0 0 chrX 106831957 106831995 -70142145 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chrX 106832382 106832405 -70141735 + AT_rich Low_complexity Low_complexity 1 23 0 566 309 60 18 chrX 106833085 106833302 -70140838 + MIR SINE MIR 32 257 -5 749 201 25 13 chrX 106833376 106833535 -70140605 - MER5A DNA MER1_type 0 189 29 18110 210 28 24 chrX 106834066 106841636 -70132504 - L1PA15 LINE L1 -7 7596 7 222 37 0 0 chrX 106842315 106842342 -70131798 + (TAA)n Simple_repeat Simple_repeat 1 27 0 335 319 58 22 chrX 106842550 106842688 -70131452 - MIR SINE MIR -117 145 3 576 320 53 35 chrX 106843590 106843874 -70130266 + L2 LINE L2 1529 1817 -1497 246 32 0 0 chrX 106844202 106844233 -70129907 + (CA)n Simple_repeat Simple_repeat 2 32 0 329 315 30 24 chrX 106844265 106844308 -70129832 - L1MEd LINE L1 -1432 4950 4909 219 69 0 0 chrX 106844308 106844337 -70129803 + (TTA)n Simple_repeat Simple_repeat 2 30 0 329 315 30 24 chrX 106844337 106844623 -70129517 - L1MEd LINE L1 -1473 4909 4619 2948 148 111 25 chrX 106844655 106845304 -70128836 + MER39 LTR ERV1 1 705 -2 3957 189 53 15 chrX 106845345 106846304 -70127836 - L1MC3 LINE L1 0 7785 6790 3335 188 86 6 chrX 106846318 106847100 -70127040 - L1MC3 LINE L1 -1481 6304 5461 619 295 100 38 chrX 106847176 106848295 -70125845 - L1MEd LINE L1 -1898 4484 3297 330 239 54 0 chrX 106848510 106848602 -70125538 - MER21B LTR ERV1 -109 754 658 1259 246 132 92 chrX 106848610 106849282 -70124858 - MER21B LTR ERV1 -152 711 13 327 312 0 56 chrX 106849529 106849573 -70124567 + L1ME LINE L1 270 315 -5755 3159 145 15 17 chrX 106849573 106850105 -70124035 - LTR26B LTR ERV1 0 531 1 327 312 0 56 chrX 106850105 106850185 -70123955 + L1ME LINE L1 315 387 -5683 978 178 11 17 chrX 106850244 106850418 -70123722 + AluJo SINE Alu 127 299 -13 841 264 45 32 chrX 106850418 106850645 -70123495 + L1ME LINE L1 2429 2665 -3415 3405 67 2 9 chrX 106850645 106851096 -70123044 + LTR7 LTR ERV1 1 448 -2 841 264 45 32 chrX 106851096 106851270 -70122870 + L1ME LINE L1 2665 2835 -3245 2097 121 24 40 chrX 106851420 106851800 -70122340 + THE1C LTR MaLR 2 375 0 9495 117 44 39 chrX 106851800 106853371 -70120769 + THE1C-int LTR MaLR 1 1579 -1 1805 149 49 32 chrX 106853372 106853741 -70120399 + THE1C LTR MaLR 1 375 0 2028 155 28 24 chrX 106854159 106854857 -70119283 + L1PB2 LINE L1 4876 5567 -584 1315 130 5 14 chrX 106854866 106855081 -70119059 - THE1-int LTR MaLR -180 1400 1188 3799 99 30 17 chrX 106855090 106855683 -70118457 + L1PB2 LINE L1 5548 6148 -3 240 286 90 14 chrX 106855754 106855965 -70118175 - L1MEd LINE L1 -3789 2593 2367 712 214 6 0 chrX 106856327 106856505 -70117635 + L1 LINE L1 5156 5334 -812 677 295 69 26 chrX 106856677 106856982 -70117158 + L2 LINE L2 2994 3311 -2 282 116 0 0 chrX 106857168 106857211 -70116929 + (TTCCC)n Simple_repeat Simple_repeat 2 44 0 623 313 76 31 chrX 106857241 106857978 -70116162 - L1MEd LINE L1 -4889 1483 714 2184 111 0 0 chrX 106858275 106858577 -70115563 + AluSc SINE Alu 1 302 0 544 258 32 77 chrX 106858915 106859136 -70115004 - MLT1I LTR MaLR 0 409 199 312 361 19 6 chrX 106859279 106859437 -70114703 + L2 LINE L2 1891 2050 -1264 24 0 0 0 chrX 106859495 106859519 -70114621 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 106859703 106859732 -70114408 + AT_rich Low_complexity Low_complexity 1 29 0 2231 176 35 31 chrX 106860102 106860557 -70113583 - MSTB2 LTR MaLR 0 457 1 267 326 35 12 chrX 106860746 106860832 -70113308 + MIR3 SINE MIR 94 181 -27 181 299 169 13 chrX 106861137 106861214 -70112926 + MIR3 SINE MIR 2 90 -118 2380 89 3 0 chrX 106862347 106862650 -70111490 - AluSg SINE Alu -6 304 1 2207 61 46 0 chrX 106862661 106862941 -70111199 - AluY SINE Alu -16 295 3 365 335 58 31 chrX 106862971 106863162 -70110978 + MIR SINE MIR 2 197 -65 433 170 70 0 chrX 106863165 106863265 -70110875 + L1MA2 LINE L1 25 131 -7434 358 338 60 13 chrX 106863272 106863423 -70110717 - L3 LINE CR1 -11 1566 1409 18694 176 20 11 chrX 106863443 106868128 -70106012 + L1MA2 LINE L1 126 4849 -2716 5655 140 18 20 chrX 106868187 106870040 -70104100 + L1MA2 LINE L1 5876 7723 0 496 328 37 34 chrX 106870053 106870376 -70103764 - L2 LINE L2 -849 2465 2142 413 301 104 43 chrX 106971203 106971858 -70002282 + L1MEc LINE L1 790 1484 -4912 522 332 36 20 chrX 106972293 106972546 -70001594 - L2 LINE L2 -534 2780 2524 3745 252 56 9 chrX 106972688 106973669 -70000471 + L1MA3 LINE L1 15 1041 -6524 9610 170 14 4 chrX 106973694 106975614 -69998526 + L1MA3 LINE L1 4953 6891 -743 507 218 0 27 chrX 106975627 106975724 -69998416 + FLAM_A SINE Alu 27 122 -189 4516 136 44 17 chrX 106975724 106976543 -69997597 + L1MA3 LINE L1 6879 7719 -5 507 218 0 27 chrX 106976543 106976555 -69997585 + FLAM_A SINE Alu 122 133 -178 1566 217 84 31 chrX 106976903 106977354 -69996786 - L1MA9 LINE L1 -38 6274 5800 437 253 130 67 chrX 106977354 106977623 -69996517 + MLT1I LTR MaLR 114 399 -10 319 339 146 21 chrX 106977629 106977821 -69996319 - L3 LINE CR1 -31 1546 1331 1360 190 15 100 chrX 106979414 106979764 -69994376 - MLT1A2 LTR MaLR -56 401 1 2304 89 26 0 chrX 106979838 106980141 -69993999 + AluSq SINE Alu 1 311 -2 1001 120 90 6 chrX 106981963 106982066 -69992074 + LTR9B LTR ERV1 464 588 -56 1686 79 0 0 chrX 106982066 106982299 -69991841 - AluY SINE Alu 0 311 78 1001 120 90 6 chrX 106982299 106982362 -69991778 + LTR9B LTR ERV1 588 644 0 798 269 90 53 chrX 106982509 106983000 -69991140 + MLT1J LTR MaLR 3 511 0 3494 211 86 154 chrX 106983150 106984854 -69989286 + L1MCa LINE L1 1 1746 -4818 2171 118 3 6 chrX 106984854 106985168 -69988972 - AluSq SINE Alu 0 313 1 3494 211 86 154 chrX 106985168 106985219 -69988921 + L1MCa LINE L1 1746 1799 -4765 2326 132 25 0 chrX 106985220 106985584 -69988556 + L1MC/D LINE L1 5442 5814 -519 250 253 36 36 chrX 106985599 106985682 -69988458 + L1MCa LINE L1 1922 2004 -4560 2590 176 6 30 chrX 106985691 106986072 -69988068 + L1MC1 LINE L1 5833 6201 -132 2351 93 0 0 chrX 106986072 106986373 -69987767 - AluSg SINE Alu -9 301 1 2590 176 6 30 chrX 106986373 106986498 -69987642 + L1MC1 LINE L1 6201 6327 -6 845 232 13 0 chrX 106986507 106986731 -69987409 + L1MCa LINE L1 1920 2146 -4418 5077 254 15 20 chrX 106986735 106987881 -69986259 + L1MCa LINE L1 2192 3535 -3029 3679 34 0 0 chrX 106987881 106988352 -69985788 + L1PA5 LINE L1 5701 6171 0 5077 254 15 20 chrX 106988352 106989124 -69985016 + L1MCa LINE L1 3535 4309 -2255 1736 174 3 10 chrX 106989807 106990105 -69984035 - AluJo SINE Alu -12 300 5 1013 181 190 59 chrX 106990313 106990634 -69983506 + MLT1A1 LTR MaLR 1 363 -2 765 264 90 31 chrX 106990823 106991122 -69983018 - LTR16A1 LTR ERVL 0 457 151 27 0 0 0 chrX 106993095 106993122 -69981018 + AT_rich Low_complexity Low_complexity 1 27 0 311 225 56 0 chrX 106993346 106993417 -69980723 + L2 LINE L2 3195 3269 -3 424 345 94 46 chrX 106993432 106993953 -69980187 + L2 LINE L2 1775 2320 -994 214 269 176 60 chrX 106994285 106994467 -69979673 - L2 LINE L2 -4 3309 3107 317 125 31 0 chrX 106994609 106994673 -69979467 + L1MA9 LINE L1 6244 6309 -3 364 243 0 0 chrX 106995278 106995348 -69978792 - MER70B LTR ERVL -19 559 490 10580 214 38 15 chrX 106995835 106999047 -69975093 - L1MB1 LINE L1 0 6168 2849 2295 100 0 3 chrX 106999047 106999347 -69974793 + AluSx SINE Alu 1 299 -13 10580 214 38 15 chrX 106999347 106999812 -69974328 - L1MB1 LINE L1 -3319 2849 2396 227 130 74 56 chrX 106999815 106999869 -69974271 - MLT2B1 LTR ERVL 0 520 466 1890 95 51 31 chrX 106999973 107000267 -69973873 + AluSx SINE Alu 1 300 -12 21 89 0 0 chrX 107000830 107000886 -69973254 + AT_rich Low_complexity Low_complexity 1 56 0 366 343 105 6 chrX 107001101 107001282 -69972858 - MIR SINE MIR -52 210 12 2621 144 92 56 chrX 107001713 107002288 -69971852 - LTR4 LTR ERV1 0 596 1 9673 199 27 14 chrX 107002872 107004204 -69969936 + L1MC3 LINE L1 5520 6891 -894 240 59 0 0 chrX 107004204 107004238 -69969902 + (CA)n Simple_repeat Simple_repeat 1 34 0 9673 199 27 14 chrX 107004238 107004966 -69969174 + L1MC3 LINE L1 6891 7608 -177 1398 166 0 0 chrX 107005194 107005411 -69968729 + AluSx SINE Alu 1 217 -95 715 209 25 0 chrX 107005411 107005574 -69968566 + L1MC3 LINE L1 7612 7778 -7 378 261 43 22 chrX 107005594 107005732 -69968408 + HAL1b LINE L1 484 624 -724 2055 107 40 0 chrX 107005819 107006117 -69968023 + AluSg SINE Alu 1 310 0 1298 242 16 20 chrX 107006396 107006702 -69967438 + L1MD3 LINE L1 6654 6958 -1037 2031 220 19 42 chrX 107006746 107007079 -69967061 + L1MD3 LINE L1 7474 7792 -203 2047 130 7 0 chrX 107007079 107007379 -69966761 + AluSg SINE Alu 1 302 -8 2031 220 19 42 chrX 107007379 107007573 -69966567 + L1MD3 LINE L1 7792 7989 -6 1318 226 24 83 chrX 107007774 107008397 -69965743 + L1MC4a LINE L1 5868 6453 -1355 3598 241 29 28 chrX 107008402 107009474 -69964666 + L1MC4a LINE L1 6735 7807 -1 1929 140 3 3 chrX 107009492 107009792 -69964348 + AluJb SINE Alu 1 300 -12 654 68 10 29 chrX 107010003 107010106 -69964034 + L1MA1 LINE L1 6202 6302 0 22 0 0 0 chrX 107010106 107010128 -69964012 + AT_rich Low_complexity Low_complexity 1 22 0 605 330 62 38 chrX 107010243 107010453 -69963687 + L1ME3A LINE L1 4487 4690 -1476 873 185 6 28 chrX 107010453 107010631 -69963509 + FAM SINE Alu 2 175 0 605 330 62 38 chrX 107010631 107011803 -69962337 + L1ME3A LINE L1 4690 5903 -263 3861 112 80 68 chrX 107012673 107013432 -69960708 + LTR1 LTR ERV1 18 785 0 328 318 123 0 chrX 107016063 107016258 -69957882 - L1 LINE L1 -1537 4609 4391 2133 176 27 5 chrX 107016305 107016680 -69957460 + MSTB LTR MaLR 44 426 0 198 167 0 0 chrX 107016836 107016872 -69957268 + (CA)n Simple_repeat Simple_repeat 1 36 0 317 309 66 74 chrX 107017088 107017282 -69956858 + L1M4 LINE L1 2 195 -6347 1461 195 10 17 chrX 107017282 107017579 -69956561 - AluJo SINE Alu -17 295 1 317 309 66 74 chrX 107017579 107017627 -69956513 + L1M4 LINE L1 195 242 -6300 3097 243 77 26 chrX 107017944 107019009 -69955131 + L1M4 LINE L1 800 1918 -4728 1064 164 5 0 chrX 107019321 107019522 -69954618 + L1 LINE L1 5163 5364 -782 * 1353 238 45 7 chrX 107019520 107020042 -69954098 - L1MCb LINE L1 -4851 1194 813 424 270 66 5 chrX 107020061 107020272 -69953868 - L1ME LINE L1 -5155 1050 827 273 213 0 0 chrX 107020332 107020379 -69953761 - MER2 DNA MER2_type -2 343 297 260 263 0 18 chrX 107020386 107020443 -69953697 + MER2 DNA MER2_type 290 345 0 459 222 22 0 chrX 107020447 107020537 -69953603 - MER2 DNA MER2_type -253 92 1 501 244 30 30 chrX 107020933 107021097 -69953043 - L1ME LINE L1 -6194 202 39 572 318 58 16 chrX 107021178 107021420 -69952720 + MIR SINE MIR 2 253 -9 233 216 14 27 chrX 107021690 107021764 -69952376 + (TA)n Simple_repeat Simple_repeat 1 73 0 303 139 0 101 chrX 107021775 107021854 -69952286 - LTR66 LTR ERVL -142 468 398 5928 91 4 6 chrX 107022078 107022904 -69951236 + L1PB1 LINE L1 5268 6091 -60 1907 112 3 59 chrX 107023467 107023772 -69950368 - AluSg SINE Alu -22 288 1 5595 158 19 17 chrX 107024376 107026029 -69948111 + L1MA9 LINE L1 4656 6311 -1 290 278 9 17 chrX 107026047 107026162 -69947978 + (CATATA)n Simple_repeat Simple_repeat 2 115 0 897 170 13 85 chrX 107026183 107026407 -69947733 + L1MB2 LINE L1 5919 6126 -45 3057 126 66 4 chrX 107026415 107026914 -69947226 + L1MC1 LINE L1 5394 5923 -410 13760 134 49 27 chrX 107026914 107028426 -69945714 + Tigger1 DNA MER2_type 1 1585 -833 6385 73 21 6 chrX 107028426 107030192 -69943948 + L1PA10 LINE L1 4355 6158 -10 13760 134 49 27 chrX 107030192 107031044 -69943096 + Tigger1 DNA MER2_type 1585 2417 -1 2361 142 3 16 chrX 107031045 107031432 -69942708 + L1MC1 LINE L1 5922 6303 -30 7529 27 1 0 chrX 107032211 107033117 -69941023 - L1PA2 LINE L1 -4 6151 5241 200 256 269 0 chrX 107033118 107033196 -69940944 - MIR SINE MIR -78 130 32 26 30 0 0 chrX 107033210 107033243 -69940897 + AT_rich Low_complexity Low_complexity 1 33 0 449 368 119 14 chrX 107033417 107033844 -69940296 + L2 LINE L2 1686 2157 -1157 458 226 19 19 chrX 107033853 107033959 -69940181 - L2 LINE L2 -15 3298 3193 252 311 25 25 chrX 107033949 107034071 -69940069 + L2 LINE L2 2142 2263 -1051 * 229 339 35 9 chrX 107034076 107034191 -69939949 - L2 LINE L2 -237 3035 2918 2412 67 7 0 chrX 107034199 107034497 -69939643 + AluY SINE Alu 12 311 0 5147 165 49 17 chrX 107034628 107035783 -69938357 + L1MC1 LINE L1 5025 6217 -116 1993 50 0 35 chrX 107035852 107036112 -69938028 + AluY SINE Alu 45 295 -16 1326 273 37 41 chrX 107036117 107036553 -69937587 + MER74B LTR ERVL 115 548 -74 466 178 9 47 chrX 107036606 107036713 -69937427 + L1MC1 LINE L1 6217 6319 -14 1239 293 54 54 chrX 107036730 107037590 -69936550 + L1ME1 LINE L1 1475 2480 -4345 655 228 7 14 chrX 107037606 107037751 -69936389 + MER74C LTR ERVL 5 148 -312 200 35 35 0 chrX 107037777 107037806 -69936334 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2093 113 0 7 chrX 107037810 107038103 -69936037 - AluSq SINE Alu -22 291 1 1419 256 84 34 chrX 107038119 107038793 -69935347 + L1ME1 LINE L1 5643 6349 -313 249 117 36 45 chrX 107038843 107038954 -69935186 + (TA)n Simple_repeat Simple_repeat 2 111 0 36 77 0 0 chrX 107038958 107039036 -69935104 + AT_rich Low_complexity Low_complexity 1 78 0 269 336 0 29 chrX 107039089 107039229 -69934911 + L1ME1 LINE L1 6457 6592 -72 407 92 15 0 chrX 107039267 107039332 -69934808 + (TA)n Simple_repeat Simple_repeat 1 66 0 281 286 40 51 chrX 107039551 107039726 -69934414 + HAL1b LINE L1 287 459 -889 12839 178 44 12 chrX 107040183 107042548 -69931592 + L1M1 LINE L1 24 2463 -5102 30971 106 17 59 chrX 107042559 107048973 -69925167 + L1PA7 LINE L1 12 6143 -11 5563 165 77 12 chrX 107048971 107050602 -69923538 + L1M1 LINE L1 2449 4238 -3327 * 24 53 0 0 chrX 107050602 107050640 -69923500 + AT_rich Low_complexity Low_complexity 1 38 0 22760 39 45 2 chrX 107050880 107053794 -69920346 - L1P LINE L1 -2544 3602 566 260 345 44 57 chrX 107053802 107054031 -69920109 + L2 LINE L2 2458 2683 -631 193 353 72 14 chrX 107054132 107054271 -69919869 + L2 LINE L2 2708 2854 -460 232 337 48 0 chrX 107054345 107054428 -69919712 - L2 LINE L2 -18 3254 3168 243 310 112 30 chrX 107054494 107054691 -69919449 + L2 LINE L2 2999 3211 -102 1973 143 39 41 chrX 107055206 107055570 -69918570 + THE1B LTR MaLR 1 363 -1 315 320 60 27 chrX 107055893 107056043 -69918097 + MIR3 SINE MIR 6 160 -48 23 0 0 0 chrX 107056803 107056826 -69917314 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 107057144 107057168 -69916972 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chrX 107058044 107058073 -69916067 + AT_rich Low_complexity Low_complexity 1 29 0 1860 154 55 25 chrX 107058859 107059223 -69914917 - THE1C LTR MaLR 0 375 1 258 290 0 11 chrX 107059340 107059433 -69914707 + L1ME1 LINE L1 794 885 -5524 2343 247 117 45 chrX 107059483 107060639 -69913501 + L1ME1 LINE L1 868 2125 -4281 1691 186 42 0 chrX 107060639 107060973 -69913167 + L1PA16 LINE L1 5816 6163 -3 2343 247 117 45 chrX 107060973 107061090 -69913050 + L1ME1 LINE L1 2125 2232 -4174 3044 234 73 22 chrX 107061149 107061404 -69912736 + L1ME1 LINE L1 5015 5256 -1170 2431 208 24 11 chrX 107061404 107061939 -69912201 + MER34 LTR ERV1 1 542 0 3044 234 73 22 chrX 107061939 107062101 -69912039 + L1ME1 LINE L1 5256 5408 -1018 1509 194 0 24 chrX 107062101 107062425 -69911715 + AluJo SINE Alu 1 317 0 3044 234 73 22 chrX 107062425 107063336 -69910804 + L1ME1 LINE L1 5408 6407 -19 1470 120 0 4 chrX 107063923 107064157 -69909983 + L1PB1 LINE L1 5919 6151 0 23 33 0 0 chrX 107065298 107065328 -69908812 + AT_rich Low_complexity Low_complexity 1 30 0 939 249 99 4 chrX 107065410 107065663 -69908477 + LTR16C LTR ERVL 200 476 -15 322 284 11 11 chrX 107065743 107065838 -69908302 + L2 LINE L2 1378 1472 -1842 951 287 97 82 chrX 107065902 107066512 -69907628 + L2 LINE L2 1925 2543 -771 266 326 12 47 chrX 107067147 107067233 -69906907 + MIR SINE MIR 6 88 -174 350 346 58 9 chrX 107067254 107067687 -69906453 + L1MC4a LINE L1 4081 4534 -1612 410 304 68 36 chrX 107067719 107068015 -69906125 + L1MC4a LINE L1 4643 4963 -1183 1831 172 3 0 chrX 107068015 107068317 -69905823 + AluSx SINE Alu 1 303 -9 410 304 68 36 chrX 107068317 107068524 -69905616 + L1MC4a LINE L1 4963 5162 -984 3365 223 48 74 chrX 107068570 107069059 -69905081 + L1MC4a LINE L1 5327 5828 -1980 1774 85 0 0 chrX 107069059 107069305 -69904835 + L1MA2 LINE L1 6056 6301 -3 3365 223 48 74 chrX 107069305 107070011 -69904129 + L1MC4a LINE L1 5828 6490 -1318 250 277 53 0 chrX 107070006 107070100 -69904040 + L1MD3 LINE L1 7835 7933 -62 * 1283 162 36 4 chrX 107070102 107070355 -69903785 + L1 LINE L1 4972 5232 -914 1087 273 98 45 chrX 107070802 107071352 -69902788 + L1ME3 LINE L1 2313 2931 -3215 2465 109 27 3 chrX 107071352 107071718 -69902422 - THE1C LTR MaLR 0 375 1 1087 273 98 45 chrX 107071718 107072071 -69902069 + L1ME3 LINE L1 2931 3264 -2882 1137 295 79 19 chrX 107072148 107073042 -69901098 + L1ME3 LINE L1 4978 5928 -242 380 219 0 137 chrX 107074612 107074758 -69899382 + L1ME3 LINE L1 5950 6075 -87 1398 172 72 8 chrX 107074761 107075011 -69899129 + Tigger7 DNA MER2_type 1 266 -284 576 104 9 85 chrX 107075009 107075035 -69899105 + Tigger7 DNA MER2_type 2389 2415 -72 * 1705 179 12 38 chrX 107075035 107075381 -69898759 - MER1B DNA MER1_type 0 337 1 576 104 9 85 chrX 107075381 107075460 -69898680 + Tigger7 DNA MER2_type 2415 2486 -1 322 178 12 0 chrX 107075464 107075531 -69898609 + L1ME3 LINE L1 6089 6160 -10 533 287 171 18 chrX 107075585 107075927 -69898213 + L2 LINE L2 2748 3189 -124 707 317 79 4 chrX 107076067 107076332 -69897808 - MLT1J2 LTR MaLR -157 293 9 477 248 31 31 chrX 107076342 107076471 -69897669 + L2 LINE L2 3185 3313 0 13793 127 20 11 chrX 107077901 107081003 -69893137 - L1PA12 LINE L1 0 6168 3037 714 262 21 11 chrX 107081085 107081276 -69892864 - L1ME1 LINE L1 -6 6160 5968 346 278 89 6 chrX 107081267 107081436 -69892704 + L1MCc LINE L1 1162 1344 -5079 * 1553 274 90 45 chrX 107081449 107082587 -69891553 + L1MCc LINE L1 1378 2772 -4350 2229 164 52 2 chrX 107082587 107082989 -69891151 + MSTB LTR MaLR 1 422 -4 1553 274 90 45 chrX 107082989 107083265 -69890875 + L1MCc LINE L1 2772 3034 -4088 1481 280 80 18 chrX 107083275 107083764 -69890376 - MER69 DNA AcHobo -1975 551 33 2254 201 44 14 chrX 107083800 107084297 -69889843 - L1MC3 LINE L1 -1 8202 7691 248 33 0 0 chrX 107084296 107084326 -69889814 - L1P3 LINE L1 -455 5699 5670 * 1681 221 52 76 chrX 107084337 107084875 -69889265 - L1MC3 LINE L1 -1672 6531 6007 3856 253 59 35 chrX 107084878 107087744 -69886396 - L1MC3 LINE L1 -3479 3085 1 22 0 0 0 chrX 107088032 107088054 -69886086 + AT_rich Low_complexity Low_complexity 1 22 0 1175 250 68 34 chrX 107088563 107089073 -69885067 + MER34B LTR ERV1 1 561 -4 407 280 200 7 chrX 107089735 107089885 -69884255 - MER5A DNA MER1_type -1 188 10 194 372 35 18 chrX 107090065 107090178 -69883962 + L2 LINE L2 2235 2349 -965 237 386 70 13 chrX 107090297 107090455 -69883685 + L2 LINE L2 2532 2698 -616 451 356 40 40 chrX 107090848 107091323 -69882817 + L1M4 LINE L1 2248 2722 -3424 486 261 46 32 chrX 107091363 107091581 -69882559 + L1M4 LINE L1 2788 3008 -3138 2145 172 8 20 chrX 107091794 107092189 -69881951 + MLT1B LTR MaLR 1 390 0 436 314 20 7 chrX 107093297 107093450 -69880690 + MER5A DNA MER1_type 35 189 0 649 225 73 39 chrX 107093492 107093631 -69880509 - MER58A DNA MER1_type -2197 223 75 2837 124 42 89 chrX 107093631 107093803 -69880337 + MER4A LTR ERV1 3 182 -418 2476 47 17 0 chrX 107093803 107094101 -69880039 + AluY SINE Alu 1 303 -8 2837 124 42 89 chrX 107094101 107094555 -69879585 + MER4A LTR ERV1 182 599 -1 649 225 73 39 chrX 107094555 107094593 -69879547 - MER58A DNA MER1_type -2345 75 40 5321 249 83 19 chrX 107094593 107098372 -69875768 + L1MB7 LINE L1 8 4066 -2578 5479 125 26 0 chrX 107098377 107099636 -69874504 + L1PA16 LINE L1 4873 6154 -12 4105 204 62 13 chrX 107099650 107101303 -69872837 + L1MB7 LINE L1 4692 6417 -259 2241 101 3 0 chrX 107101303 107101599 -69872541 - AluSp SINE Alu -14 299 3 22 0 0 0 chrX 107101602 107101624 -69872516 + AT_rich Low_complexity Low_complexity 1 22 0 588 221 3 14 chrX 107101625 107101787 -69872353 + L1ME LINE L1 802 1001 -5110 * 1077 216 39 19 chrX 107101779 107102038 -69872102 + L1MB7 LINE L1 6400 6663 -19 540 328 65 13 chrX 107102211 107102443 -69871697 + MIR SINE MIR 2 245 -17 5761 121 69 4 chrX 107102453 107103422 -69870718 + Tigger3b DNA MER2_type 158 1189 -42 231 300 82 9 chrX 107103425 107103535 -69870605 - L3 LINE CR1 -187 1390 1273 489 291 51 0 chrX 107103575 107103750 -69870390 - L1ME1 LINE L1 -5 6161 5978 3072 173 43 5 chrX 107103757 107104342 -69869798 - L1MB3 LINE L1 0 6183 5577 500 107 0 0 chrX 107104342 107104417 -69869723 - AluS SINE Alu -238 75 1 1990 200 22 5 chrX 107104418 107104965 -69869175 - L1MB3 LINE L1 -739 5441 4883 2065 240 33 17 chrX 107105039 107105618 -69868522 - L1MB3 LINE L1 -1267 4879 4292 243 343 63 29 chrX 107105718 107105893 -69868247 - L1M4 LINE L1 -6289 253 73 955 136 6 11 chrX 107105903 107106079 -69868061 + (TCTG)n Simple_repeat Simple_repeat 2 176 0 23 0 0 0 chrX 107106370 107106393 -69867747 + AT_rich Low_complexity Low_complexity 1 23 0 1594 226 77 14 chrX 107107031 107107470 -69866670 - MLT1C LTR MaLR 0 467 1 27 62 0 0 chrX 107108511 107108559 -69865581 + AT_rich Low_complexity Low_complexity 1 48 0 391 350 144 7 chrX 107109176 107109453 -69864687 + L2 LINE L2 2555 2869 -445 1242 171 8 32 chrX 107109562 107109808 -69864332 - L1MC1 LINE L1 -6 6327 6088 313 179 0 0 chrX 107109808 107109864 -69864276 + L1MC/D LINE L1 5606 5661 -672 * 2210 182 34 25 chrX 107109862 107110545 -69863595 - L1MC1 LINE L1 -656 5677 4982 2208 80 34 40 chrX 107110554 107110906 -69863234 - L1MA3 LINE L1 -1 6304 5955 297 258 32 0 chrX 107110932 107111025 -69863115 - L1MC1 LINE L1 -1150 4996 4901 263 314 29 9 chrX 107111093 107111198 -69862942 + L2 LINE L2 2981 3087 -185 286 293 0 50 chrX 107111244 107111343 -69862797 + L2 LINE L2 3220 3313 0 27 0 0 0 chrX 107112029 107112056 -69862084 + AT_rich Low_complexity Low_complexity 1 27 0 2135 142 29 58 chrX 107112885 107113300 -69860840 + MER57A LTR ERV1 1 403 0 351 73 0 55 chrX 107113558 107113613 -69860527 - L1PA5 LINE L1 -1884 4262 4211 8923 49 8 0 chrX 107113613 107115495 -69858645 + L1PA5 LINE L1 4255 6146 -8 286 326 80 7 chrX 107115981 107116119 -69858021 - L2 LINE L2 0 3313 3166 681 59 330 0 chrX 107117174 107117292 -69856848 + L1PA3 LINE L1 5999 6155 0 29 0 0 0 chrX 107117292 107117321 -69856819 + AT_rich Low_complexity Low_complexity 1 29 0 2072 245 58 8 chrX 107117993 107118620 -69855520 - L1ME2 LINE L1 0 6233 5545 3651 226 102 47 chrX 107118627 107120773 -69853367 - L1MD2 LINE L1 -16 6343 4077 517 219 7 15 chrX 107120778 107120915 -69853225 - L1ME2 LINE L1 -684 5549 5414 * 572 254 90 37 chrX 107120910 107121209 -69852931 - L1ME2 LINE L1 -1081 5134 4820 3338 158 55 52 chrX 107121209 107121954 -69852186 + LTR1 LTR ERV1 1 747 -38 809 254 11 18 chrX 107121954 107122229 -69851911 - L1ME2 LINE L1 -1392 4823 4551 552 261 12 55 chrX 107122239 107122492 -69851648 - L1ME2 LINE L1 -4281 2115 1874 2536 55 0 3 chrX 107122537 107122845 -69851295 - AluY SINE Alu -4 307 1 1459 250 65 10 chrX 107122873 107123397 -69850743 - L1ME LINE L1 -505 5730 5180 288 258 11 21 chrX 107123434 107123527 -69850613 - L1ME LINE L1 -1134 5081 4990 580 255 7 0 chrX 107123548 107123689 -69850451 - L1ME LINE L1 -4328 2068 1927 23 33 0 0 chrX 107123971 107124001 -69850139 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chrX 107124060 107124088 -69850052 + AT_rich Low_complexity Low_complexity 1 28 0 2226 71 0 4 chrX 107124205 107124486 -69849654 + AluY SINE Alu 17 296 -15 4740 165 35 61 chrX 107125246 107126345 -69847795 - MER11C LTR ERVK 0 1071 1 2173 107 10 7 chrX 107126829 107127129 -69847011 + AluSg SINE Alu 1 301 -9 220 319 12 74 chrX 107127146 107127309 -69846831 + L2 LINE L2 3161 3313 0 1338 167 73 42 chrX 107128770 107128900 -69845240 + AluJo SINE Alu 1 125 -187 360 0 0 0 chrX 107128900 107128940 -69845200 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1338 167 73 42 chrX 107128940 107129096 -69845044 + AluJo SINE Alu 125 296 -16 1455 121 31 5 chrX 107129180 107129404 -69844736 - MER30 DNA MER1_type 0 230 1 306 0 0 0 chrX 107129677 107129711 -69844429 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 318 0 12 chrX 107130067 107130152 -69843988 - MIR3 SINE MIR -15 193 110 2254 97 0 0 chrX 107130357 107130656 -69843484 - AluSx SINE Alu -11 301 3 2456 137 24 7 chrX 107130992 107131416 -69842724 + MER95 LTR ERV 1 431 0 748 255 119 13 chrX 107132606 107132841 -69841299 + MIR SINE MIR 3 262 0 482 314 139 59 chrX 107132959 107133734 -69840406 - L2 LINE L2 -196 3076 2253 1693 116 38 0 chrX 107133811 107134078 -69840062 - L1MA3 LINE L1 0 6305 6029 28229 94 11 9 chrX 107134945 107136805 -69837335 - L1PA7 LINE L1 -7 6462 4606 2168 98 0 35 chrX 107136805 107137122 -69837018 - AluSg SINE Alu -4 306 1 28229 94 11 9 chrX 107137122 107141708 -69832432 - L1PA7 LINE L1 -1863 4606 1 1388 215 61 16 chrX 107141883 107142311 -69831829 + L1M4 LINE L1 4777 5223 -923 307 300 140 13 chrX 107142831 107142981 -69831159 + MIR SINE MIR 94 262 0 1769 348 51 22 chrX 107143239 107144378 -69829762 - L2 LINE L2 -67 3246 2073 2941 6 0 0 chrX 107145690 107146006 -69828134 + AluYb8 SINE Alu 1 316 -2 28 29 0 0 chrX 107146042 107146077 -69828063 + AT_rich Low_complexity Low_complexity 1 35 0 209 343 14 14 chrX 107146209 107146279 -69827861 + L2 LINE L2 3201 3270 -2 2346 84 0 3 chrX 107146305 107146603 -69827537 - AluSp SINE Alu -16 297 1 305 106 0 0 chrX 107149713 107149760 -69824380 + MADE1 DNA Mariner 2 48 -32 312 306 90 14 chrX 107149890 107150034 -69824106 + MLT2E LTR ERVL 33 187 -441 2473 54 3 0 chrX 107153558 107153856 -69820284 - AluY SINE Alu -11 300 2 223 159 23 0 chrX 107154077 107154121 -69820019 + L2 LINE L2 3269 3313 0 227 361 7 56 chrX 107154811 107154955 -69819185 - MIR SINE MIR -66 196 60 352 329 40 26 chrX 107155762 107155914 -69818226 - MIR3 SINE MIR -52 156 3 184 277 0 0 chrX 107156034 107156081 -69818059 + MER5B DNA MER1_type 3 49 -129 273 308 125 17 chrX 107156116 107156236 -69817904 + MER5A DNA MER1_type 51 183 -6 258 298 38 99 chrX 107156277 107156408 -69817732 - MER5B DNA MER1_type -35 143 21 2230 99 3 20 chrX 107156548 107156852 -69817288 + AluSq SINE Alu 1 299 -14 3218 19 0 5 chrX 107157167 107157544 -69816596 + L1PA3 LINE L1 5781 6155 0 2163 121 0 0 chrX 107157686 107158006 -69816134 - AluSx SINE Alu 0 320 1 1849 205 33 18 chrX 107158633 107159023 -69815117 + MSTD LTR MaLR 1 396 0 196 339 109 22 chrX 107159347 107159530 -69814610 - L2 LINE L2 -1 3312 3114 568 247 26 37 chrX 107159774 107159884 -69814256 - HERV16 LTR ERVL -3983 1013 904 1166 184 35 4 chrX 107159884 107160112 -69814028 - MER46A DNA MER2_type -1 235 1 568 247 26 37 chrX 107160112 107160191 -69813949 - HERV16 LTR ERVL -4092 904 826 759 316 39 26 chrX 107160329 107160887 -69813253 - HERV16 LTR ERVL -4379 617 3 651 283 21 0 chrX 107160895 107161086 -69813054 - LTR16A LTR ERVL -6 444 250 23 86 0 0 chrX 107161549 107161607 -69812533 + AT_rich Low_complexity Low_complexity 1 58 0 313 315 88 8 chrX 107161615 107161875 -69812265 - L1MC4a LINE L1 -1666 6142 5862 308 337 0 0 chrX 107162859 107162951 -69811189 - MIR SINE MIR -63 145 54 209 195 24 0 chrX 107163522 107163563 -69810577 + CT-rich Low_complexity Low_complexity 1 42 0 23 92 0 0 chrX 107164149 107164214 -69809926 + AT_rich Low_complexity Low_complexity 1 65 0 203 150 50 33 chrX 107164840 107164900 -69809240 + T-rich Low_complexity Low_complexity 3 63 0 851 191 67 13 chrX 107164939 107165251 -69808889 - MER93b LTR ERV1 0 373 12 729 135 0 0 chrX 107165269 107165373 -69808767 - FLAM_A SINE Alu -19 123 20 3240 67 35 5 chrX 107165619 107166050 -69808090 + MLT2A1 LTR ERVL 1 444 0 23521 67 8 1 chrX 107166050 107169140 -69805000 + HERVL-A1 LTR ERVL 1 3110 -2544 8095 69 27 0 chrX 107169137 107170238 -69803902 + HERVL-A1 LTR ERVL 4524 5654 0 * 3407 67 25 2 chrX 107170238 107170672 -69803468 + MLT2A1 LTR ERVL 1 444 0 205 255 21 0 chrX 107170762 107170809 -69803331 + MIR SINE MIR 156 203 -59 933 218 6 0 chrX 107170845 107171019 -69803121 + MER45A DNA AcHobo 4 178 0 2418 87 3 0 chrX 107172196 107172508 -69801632 - AluSp SINE Alu 0 313 1 1125 118 0 34 chrX 107172809 107172987 -69801153 + FRAM SINE Alu 1 165 -11 366 228 168 0 chrX 107174205 107174306 -69799834 + MER5C DNA MER1_type 1 118 -206 1912 139 52 27 chrX 107177863 107178229 -69795911 - THE1C LTR MaLR 0 375 1 389 326 15 30 chrX 107178277 107178412 -69795728 + MIR SINE MIR 22 154 -108 833 233 6 0 chrX 107178711 107178883 -69795257 - FAM SINE Alu -1 174 2 832 267 24 5 chrX 107179142 107179352 -69794788 - MIR SINE MIR -31 231 18 400 311 93 32 chrX 107179438 107179613 -69794527 + MIR3 SINE MIR 7 197 -11 301 422 56 12 chrX 107180501 107180662 -69793478 + L2 LINE L2 3104 3271 -1 1617 211 18 23 chrX 107181280 107181669 -69792471 + MLT1B LTR MaLR 1 387 -3 362 336 116 65 chrX 107181691 107182140 -69792000 - L3b LINE CR1 -10 1573 1102 1890 156 10 0 chrX 107182859 107183154 -69790986 - AluSx SINE Alu -14 298 1 257 333 143 11 chrX 107183578 107183767 -69790373 + MIR SINE MIR 37 250 -12 1200 105 52 12 chrX 107183946 107184118 -69790022 - AluSg/x SINE Alu -1 311 133 358 361 62 21 chrX 107184118 107184456 -69789684 - L3 LINE CR1 -1225 352 1 1458 144 19 57 chrX 107184639 107184903 -69789237 + AluJo SINE Alu 42 295 -17 200 139 0 28 chrX 107185713 107185749 -69788391 + MER5B DNA MER1_type 1 35 -143 1541 50 0 0 chrX 107185751 107185949 -69788191 + L1P2 LINE L1 5367 5564 -590 276 304 69 29 chrX 107185950 107186052 -69788088 - MER5B DNA MER1_type -71 107 2 413 316 35 0 chrX 107186664 107186778 -69787362 - L2 LINE L2 -1 3312 3195 7098 52 7 1 chrX 107187742 107188744 -69785396 + L1PA6 LINE L1 5144 6151 -3 439 280 88 0 chrX 107189452 107189577 -69784563 - L2 LINE L2 0 3272 3137 2356 127 25 0 chrX 107189989 107190344 -69783796 - THE1B LTR MaLR 0 364 1 372 290 14 48 chrX 107191597 107191742 -69782398 - MIR SINE MIR -56 206 67 421 252 82 27 chrX 107192461 107192608 -69781532 - MIR SINE MIR -42 220 66 1181 200 53 41 chrX 107192674 107193014 -69781126 + MER2 DNA MER2_type 1 344 0 209 81 0 27 chrX 107193269 107193306 -69780834 + (TAA)n Simple_repeat Simple_repeat 1 36 0 476 291 130 30 chrX 107193349 107193710 -69780430 + L1M4 LINE L1 2788 3184 -2962 1734 173 47 7 chrX 107194227 107194527 -69779613 + AluJo SINE Alu 1 312 0 24 67 0 0 chrX 107194539 107194584 -69779556 + AT_rich Low_complexity Low_complexity 1 45 0 192 276 0 0 chrX 107194813 107194871 -69779269 + L2 LINE L2 1313 1370 -1944 683 190 109 6 chrX 107194882 107195056 -69779084 - MER39 LTR ERV1 -515 192 1 995 211 0 52 chrX 107196677 107196871 -69777269 - MER5A DNA MER1_type -5 184 1 3004 152 110 55 chrX 107196893 107197563 -69776577 + MER39 LTR ERV1 1 707 0 277 138 11 170 chrX 107197665 107197759 -69776381 + Tigger5 DNA MER2_type 1 79 -2244 280 219 21 52 chrX 107197970 107198066 -69776074 - MER92B LTR ERV1 -7 629 537 738 193 145 19 chrX 107199929 107199970 -69774170 + MER34C LTR ERV1 1 35 -550 2011 151 7 3 chrX 107199970 107200269 -69773871 + AluJb SINE Alu 1 300 -12 738 193 145 19 chrX 107200269 107200434 -69773706 + MER34C LTR ERV1 35 233 -352 423 251 57 8 chrX 107200460 107200712 -69773428 + LTR48 LTR ERV1 382 734 -53 363 157 29 0 chrX 107200679 107200749 -69773391 + MER34 LTR ERV1 450 521 -21 * 2107 109 5 81 chrX 107200754 107201138 -69773002 + THE1A LTR MaLR 1 355 0 10742 94 23 3 chrX 107201139 107202680 -69771460 + THE1A-int LTR MaLR 2 1573 -7 2053 122 5 64 chrX 107202686 107203063 -69771077 + THE1A LTR MaLR 1 355 0 221 250 0 167 chrX 107203099 107203219 -69770921 + MIR SINE MIR 92 191 -71 2118 86 14 14 chrX 107203486 107203766 -69770374 - AluY SINE Alu -15 296 17 186 278 0 100 chrX 107203833 107203923 -69770217 - MIR3 SINE MIR -11 197 117 837 171 10 65 chrX 107204545 107204744 -69769396 + LTR49 LTR ERV1 1 188 -407 2253 135 58 8 chrX 107204781 107205180 -69768960 + MSTA LTR MaLR 10 428 0 667 193 154 120 chrX 107205184 107205593 -69768547 + LTR49 LTR ERV1 173 595 0 914 168 0 0 chrX 107205817 107205991 -69768149 + AluSg/x SINE Alu 141 314 0 21 36 0 0 chrX 107206598 107206626 -69767514 + AT_rich Low_complexity Low_complexity 1 28 0 369 401 9 9 chrX 107207104 107207326 -69766814 - L3 LINE CR1 -306 1271 1050 335 255 10 31 chrX 107207337 107207435 -69766705 - MIR SINE MIR -113 149 54 302 274 75 28 chrX 107207874 107207980 -69766160 - MIR SINE MIR -73 135 25 735 323 127 19 chrX 107208549 107208957 -69765183 - L3 LINE CR1 -147 1430 939 2421 91 13 0 chrX 107208957 107209265 -69764875 - AluSx SINE Alu 0 312 1 735 323 127 19 chrX 107209265 107209438 -69764702 - L3 LINE CR1 -638 939 786 3409 115 57 23 chrX 107209457 107210032 -69764108 + LTR49 LTR ERV1 1 595 0 688 294 204 9 chrX 107211213 107211763 -69762377 + L1MB2 LINE L1 5342 5998 -173 * 1665 270 24 6 chrX 107211354 107211929 -69762211 + L1ME1 LINE L1 5549 6161 -5 1336 151 92 42 chrX 107212251 107212535 -69761605 - AluJo SINE Alu -14 298 1 350 214 214 0 chrX 107213862 107213960 -69760180 - L2 LINE L2 0 3313 3195 249 266 98 52 chrX 107213998 107214171 -69759969 - L1ME3A LINE L1 -70 6100 5920 339 212 20 0 chrX 107214187 107214286 -69759854 - L1ME3A LINE L1 -210 5960 5860 299 221 5 168 chrX 107214399 107214589 -69759551 - L1ME2 LINE L1 -191 5973 5815 388 190 11 22 chrX 107214614 107214721 -69759419 - L1MDb LINE L1 -5043 1342 1138 390 242 65 0 chrX 107214886 107215010 -69759130 - LTR48 LTR ERV1 -42 745 614 1017 201 127 38 chrX 107215023 107215362 -69758778 - LTR48 LTR ERV1 -287 500 132 1863 69 0 0 chrX 107215367 107215598 -69758542 + AluY SINE Alu 1 231 -80 196 371 156 0 chrX 107215611 107215797 -69758343 - L2 LINE L2 -655 2659 2445 279 388 75 5 chrX 107215864 107216078 -69758062 - L2 LINE L2 -1037 2277 2049 754 236 91 49 chrX 107216428 107216814 -69757326 + L1ME1 LINE L1 4265 4666 -1480 3012 118 30 28 chrX 107216822 107216908 -69757232 + MER34B LTR ERV1 2 86 -479 2105 69 48 7 chrX 107216908 107217197 -69756943 + AluY SINE Alu 1 301 -10 3012 118 30 28 chrX 107217197 107217331 -69756809 + MER34B LTR ERV1 86 218 -347 3173 156 79 0 chrX 107217331 107217890 -69756250 + LTR26 LTR ERV1 1 603 0 3012 118 30 28 chrX 107217890 107218202 -69755938 + MER34B LTR ERV1 218 536 -29 1023 245 78 23 chrX 107218237 107218714 -69755426 + L1ME1 LINE L1 4698 5200 -946 2635 11 0 0 chrX 107218722 107219072 -69755068 - L1PA5 LINE L1 -581 5574 5225 4753 38 0 2 chrX 107219072 107219643 -69754497 + L1PA5 LINE L1 5572 6143 -11 1973 218 52 88 chrX 107219656 107219911 -69754229 + L1ME1 LINE L1 5184 5447 -719 2193 112 10 3 chrX 107219911 107220214 -69753926 + AluSg SINE Alu 1 305 -5 1973 218 52 88 chrX 107220214 107220269 -69753871 + L1ME1 LINE L1 5447 5502 -664 186 43 0 0 chrX 107220269 107220292 -69753848 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1973 218 52 88 chrX 107220292 107220994 -69753146 + L1ME1 LINE L1 5502 6162 -4 2052 97 0 29 chrX 107221244 107221523 -69752617 + AluSx SINE Alu 3 273 -39 510 231 59 59 chrX 107221588 107221774 -69752366 + MIR SINE MIR 70 255 -7 296 136 48 48 chrX 107222187 107222312 -69751828 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 1442 180 68 32 chrX 107222312 107222590 -69751550 - AluJo SINE Alu -24 288 1 556 212 53 16 chrX 107223785 107223900 -69750240 + L1MB7 LINE L1 4141 4267 -1879 1691 174 14 11 chrX 107223900 107224181 -69749959 + AluJo SINE Alu 1 282 -30 556 212 53 16 chrX 107224181 107224254 -69749886 + L1MB7 LINE L1 4267 4336 -1810 1123 137 12 0 chrX 107224257 107224418 -69749722 - AluSx SINE Alu -29 283 121 28852 111 18 66 chrX 107224433 107227196 -69746944 - L1PA7 LINE L1 0 6154 3260 2119 92 4 0 chrX 107227196 107227500 -69746640 - AluY SINE Alu 0 305 1 28852 111 18 66 chrX 107227500 107231198 -69742942 - L1PA7 LINE L1 -2894 3260 12 974 141 0 0 chrX 107231206 107231341 -69742799 - AluSx SINE Alu -176 137 3 3870 195 27 36 chrX 107231345 107231486 -69742654 + L1MB7 LINE L1 4316 4457 -1727 1283 139 28 9 chrX 107231486 107231702 -69742438 - L1PA15 LINE L1 -7 6158 5939 3870 195 27 36 chrX 107231702 107233340 -69740800 + L1MB7 LINE L1 4457 6080 -104 4136 148 40 19 chrX 107233340 107234109 -69740031 + LTR1 LTR ERV1 1 785 0 3870 195 27 36 chrX 107234109 107234205 -69739935 + L1MB7 LINE L1 6080 6175 -9 198 0 0 0 chrX 107234224 107234246 -69739894 + (GGGA)n Simple_repeat Simple_repeat 4 25 0 974 272 75 30 chrX 107234371 107234797 -69739343 + MER68 LTR ERV1 118 562 0 362 297 36 68 chrX 107234809 107235031 -69739109 + MER68-int LTR ERV1 16 230 -3961 * 9618 186 57 35 chrX 107234876 107235959 -69738181 + HERVL68 LTR ERVL 36 1094 -1943 2317 92 0 0 chrX 107235959 107236254 -69737886 + AluSg SINE Alu 1 295 -15 9618 186 57 35 chrX 107236254 107236928 -69737212 + HERVL68 LTR ERVL 1094 1752 -1285 2352 101 3 3 chrX 107236928 107237234 -69736906 - AluSx SINE Alu -6 306 1 9618 186 57 35 chrX 107237234 107237883 -69736257 + HERVL68 LTR ERVL 1752 2496 -541 819 172 41 128 chrX 107237884 107238280 -69735860 - MLT1A1 LTR MaLR -1 395 1 2389 154 68 20 chrX 107238280 107238779 -69735361 + HERVL68 LTR ERVL 2496 3018 -19 2775 192 14 38 chrX 107238795 107239369 -69734771 + MER68 LTR ERV1 1 560 -2 415 352 0 21 chrX 107239814 107239956 -69734184 - MIR SINE MIR -116 146 8 283 293 28 55 chrX 107240181 107240307 -69733833 + L1ME LINE L1 5654 5776 -345 2108 102 0 3 chrX 107240307 107240591 -69733549 + AluSq SINE Alu 1 283 -30 884 101 0 0 chrX 107240591 107240616 -69733524 + AluSx SINE Alu 1 309 0 283 293 28 55 chrX 107240616 107240669 -69733471 + L1ME LINE L1 5776 5829 -292 35 0 0 0 chrX 107240672 107240707 -69733433 + AT_rich Low_complexity Low_complexity 1 35 0 1459 237 135 41 chrX 107240806 107241445 -69732695 - L1MC4a LINE L1 -407 5755 5328 2330 149 22 10 chrX 107241445 107241484 -69732656 - MLT2D LTR ERVL -1 413 376 360 0 0 0 chrX 107241484 107241524 -69732616 + (TG)n Simple_repeat Simple_repeat 2 41 0 2330 149 22 10 chrX 107241524 107241892 -69732248 - MLT2D LTR ERVL -38 376 1 1459 237 135 41 chrX 107241892 107241962 -69732178 - L1MC4a LINE L1 -834 5328 5266 312 295 103 19 chrX 107242041 107242197 -69731943 - L1MC4a LINE L1 -953 5193 5025 39 22 0 0 chrX 107242201 107242247 -69731893 + AT_rich Low_complexity Low_complexity 1 46 0 290 239 42 30 chrX 107242250 107242417 -69731723 + (TA)n Simple_repeat Simple_repeat 1 169 0 758 263 61 80 chrX 107242474 107243002 -69731138 + MLT2B1 LTR ERVL 3 520 0 281 344 19 23 chrX 107243118 107243380 -69730760 - L1MC4a LINE L1 -1299 4847 4587 26 30 0 0 chrX 107243595 107243628 -69730512 + AT_rich Low_complexity Low_complexity 1 33 0 538 292 91 47 chrX 107243774 107243980 -69730160 - L1MC4a LINE L1 -2003 4143 3947 2332 87 10 0 chrX 107243980 107244278 -69729862 + AluSq SINE Alu 1 301 -12 538 292 91 47 chrX 107244278 107245237 -69728903 - L1MC4a LINE L1 -2199 3947 2927 1071 90 0 0 chrX 107245478 107245611 -69728529 + AluSq/x SINE Alu 3 135 -178 2189 100 0 0 chrX 107245611 107245900 -69728240 + AluY SINE Alu 1 289 -22 273 272 58 3 chrX 107246376 107246475 -69727665 - MIR SINE MIR -64 144 48 597 241 32 25 chrX 107247834 107247992 -69726148 + MIR SINE MIR 53 211 -51 3683 216 12 16 chrX 107248427 107249267 -69724873 - L1ME1 LINE L1 -4 6162 5326 229 161 48 16 chrX 107249466 107249528 -69724612 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 417 257 19 29 chrX 107249826 107249931 -69724209 - L2 LINE L2 -1 3312 3209 3472 131 27 2 chrX 107250013 107250571 -69723569 + LTR24B LTR ERV1 1 572 -4 385 338 25 38 chrX 107251186 107251343 -69722797 + MIR3 SINE MIR 13 167 -41 2348 97 3 0 chrX 107251434 107251745 -69722395 + AluSx SINE Alu 1 312 0 219 247 52 26 chrX 107253010 107253087 -69721053 - MIR3 SINE MIR -1 207 129 628 264 144 5 chrX 107253092 107253300 -69720840 - MIR SINE MIR -8 254 18 294 370 10 0 chrX 107253322 107253422 -69720718 - MIR SINE MIR -76 132 32 4635 27 16 0 chrX 107253646 107254200 -69719940 - L1PA4 LINE L1 -2 6153 5591 2627 137 27 0 chrX 107256167 107256575 -69717565 + MSTC LTR MaLR 10 428 0 267 356 27 13 chrX 107257221 107257335 -69716805 - MIR SINE MIR -13 249 131 2578 147 13 7 chrX 107257335 107257792 -69716348 - L1MA3 LINE L1 0 6305 5846 267 356 27 13 chrX 107257792 107257826 -69716314 - MIR SINE MIR -131 131 99 2106 116 65 14 chrX 107258171 107258526 -69715614 + THE1C LTR MaLR 3 375 0 189 348 90 0 chrX 107258823 107258912 -69715228 - L2 LINE L2 -213 3059 2963 224 349 65 55 chrX 107259002 107259309 -69714831 - L3 LINE CR1 -915 662 353 244 211 42 14 chrX 107259387 107259458 -69714682 + MIR SINE MIR 124 196 -66 22 56 0 0 chrX 107260492 107260528 -69713612 + AT_rich Low_complexity Low_complexity 1 36 0 1432 164 130 7 chrX 107260911 107261255 -69712885 + AluJo SINE Alu 1 377 0 26 0 0 0 chrX 107261522 107261548 -69712592 + AT_rich Low_complexity Low_complexity 1 26 0 2050 179 48 63 chrX 107262005 107262462 -69711678 + MLT2B3 LTR ERVL 105 554 0 180 0 0 0 chrX 107262983 107263003 -69711137 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 23717 173 19 20 chrX 107263005 107266973 -69707167 - L1PA10 LINE L1 -23 6460 2423 2054 146 7 0 chrX 107266973 107267281 -69706859 - AluSx SINE Alu -2 310 1 23717 173 19 20 chrX 107267281 107269701 -69704439 - L1PA10 LINE L1 -4060 2423 2 1461 155 42 110 chrX 107269925 107270351 -69703789 + MLT2C1 LTR ERVL 1 397 0 2887 226 55 17 chrX 107270537 107271259 -69702881 + L1ME1 LINE L1 5410 6159 -7 1411 251 54 13 chrX 107271431 107271822 -69702318 + MLT1J1 LTR MaLR 36 442 -4 528 319 24 0 chrX 107272349 107272515 -69701625 - MIR3 SINE MIR -2 206 37 304 40 40 0 chrX 107272586 107272636 -69701504 + (TG)n Simple_repeat Simple_repeat 2 53 0 2947 217 23 15 chrX 107273258 107273862 -69700278 + MLT1E2 LTR MaLR 18 626 0 5054 125 45 46 chrX 107274012 107274304 -69699836 + Tigger3b DNA MER2_type 1 292 -2736 737 83 42 8 chrX 107274304 107274424 -69699716 - L1PA5 LINE L1 -2 6152 6029 5054 125 45 46 chrX 107274424 107274680 -69699460 + Tigger3b DNA MER2_type 292 547 -2481 3725 129 15 2 chrX 107274680 107275270 -69698870 - L1PB4 LINE L1 0 6156 5559 5054 125 45 46 chrX 107275270 107275685 -69698455 + Tigger3b DNA MER2_type 547 964 -267 1906 160 29 29 chrX 107275685 107276060 -69698080 + THE1C LTR MaLR 1 375 0 10074 119 47 11 chrX 107276060 107277526 -69696614 + THE1C-int LTR MaLR 1 1525 -55 2243 118 0 3 chrX 107277526 107277839 -69696301 - AluSx SINE Alu 0 312 1 10074 119 47 11 chrX 107277839 107277898 -69696242 + THE1C-int LTR MaLR 1525 1580 0 2020 138 29 50 chrX 107277898 107278281 -69695859 + THE1C LTR MaLR 1 375 0 1439 164 42 15 chrX 107278282 107278544 -69695596 + Tigger3b DNA MER2_type 971 1239 -2 271 292 62 22 chrX 107279736 107279843 -69694297 + MIR SINE MIR 40 149 -72 206 266 0 47 chrX 107281017 107281081 -69693059 + L2 LINE L2 3241 3301 -12 6636 209 31 60 chrX 107281472 107283334 -69690806 - L1MC3 LINE L1 -18 7767 5961 440 336 38 0 chrX 107283386 107283517 -69690623 + L2 LINE L2 3137 3272 0 270 333 156 4 chrX 107283578 107283803 -69690337 - L2 LINE L2 -34 3279 3021 1497 211 8 87 chrX 107284640 107285033 -69689107 - MLT1A1 LTR MaLR -3 362 1 189 0 0 0 chrX 107285232 107285253 -69688887 + (TA)n Simple_repeat Simple_repeat 1 21 0 3135 206 36 72 chrX 107286795 107287636 -69686504 - MER21B LTR ERV1 -53 810 1 234 281 60 90 chrX 107287637 107287804 -69686336 + L2 LINE L2 2624 2785 -529 22 35 0 0 chrX 107288962 107288991 -69685149 + AT_rich Low_complexity Low_complexity 1 29 0 434 322 46 11 chrX 107289209 107289383 -69684757 - MIR SINE MIR -81 181 2 680 218 128 0 chrX 107289429 107289608 -69684532 - MIR SINE MIR -10 252 51 213 351 47 34 chrX 107289900 107290048 -69684092 + L2 LINE L2 2736 2885 -429 277 314 52 84 chrX 107290263 107290454 -69683686 - L2 LINE L2 -162 3110 2926 186 189 0 0 chrX 107290521 107290558 -69683582 + (CA)n Simple_repeat Simple_repeat 2 38 0 634 307 25 78 chrX 107290736 107291133 -69683007 - L2 LINE L2 -445 2869 2494 24 32 0 0 chrX 107291222 107291253 -69682887 + AT_rich Low_complexity Low_complexity 1 31 0 742 260 79 32 chrX 107291255 107291570 -69682570 - L1ME3A LINE L1 -28 6953 6624 995 244 101 37 chrX 107291602 107291738 -69682402 - L1ME3A LINE L1 -418 6555 6429 1393 176 23 103 chrX 107291738 107292135 -69682005 - MLT1A1 LTR MaLR 0 365 1 995 244 101 37 chrX 107292135 107292375 -69681765 - L1ME3A LINE L1 -544 6429 6155 1546 286 71 32 chrX 107292389 107292661 -69681479 - L1ME3A LINE L1 -1609 5348 5088 2559 86 14 0 chrX 107292661 107293020 -69681120 - L1MA1 LINE L1 0 6302 5939 1546 286 71 32 chrX 107293020 107293719 -69680421 - L1ME3A LINE L1 -1869 5088 4339 409 250 100 28 chrX 107293881 107293905 -69680235 - L1M3c LINE L1 -5938 203 182 894 179 28 0 chrX 107293905 107294084 -69680056 - L1MB1 LINE L1 -3 6165 5982 409 250 100 28 chrX 107294084 107294239 -69679901 - L1M3c LINE L1 -5959 182 11 242 247 86 11 chrX 107294291 107294465 -69679675 - L1ME3A LINE L1 -2885 4072 3886 1367 269 68 34 chrX 107294820 107295355 -69678785 - L1ME3A LINE L1 -3104 3853 3281 207 100 0 0 chrX 107295355 107295385 -69678755 + (TA)n Simple_repeat Simple_repeat 1 30 0 1367 269 68 34 chrX 107295385 107295641 -69678499 - L1ME3A LINE L1 -3676 3281 3035 399 263 33 26 chrX 107295707 107295859 -69678281 - L1ME3A LINE L1 -4178 2960 2808 269 304 7 43 chrX 107295929 107296067 -69678073 - L1ME3A LINE L1 -4637 2501 2369 * 4530 146 21 3 chrX 107296065 107296414 -69677726 - L1PB4 LINE L1 -2 6154 5813 794 48 48 0 chrX 107296414 107296559 -69677581 + (TA)n Simple_repeat Simple_repeat 1 152 0 4530 146 21 3 chrX 107296559 107296984 -69677156 - L1PB4 LINE L1 -343 5813 5366 3075 180 11 6 chrX 107297002 107297646 -69676494 - L1PB4 LINE L1 -1350 4796 4150 2254 223 53 63 chrX 107297656 107298351 -69675789 + MER76 LTR ERV 1 688 0 305 271 10 21 chrX 107298354 107298450 -69675690 - L1ME3A LINE L1 -4772 2366 2272 1213 137 0 0 chrX 107298523 107298705 -69675435 + MER57A LTR ERV1 1 182 -221 336 115 0 0 chrX 107298721 107298773 -69675367 + MER57B LTR ERV1 383 434 0 635 169 110 7 chrX 107298774 107298910 -69675230 - L1MC3 LINE L1 -961 6824 6675 29 0 0 0 chrX 107298952 107298981 -69675159 + AT_rich Low_complexity Low_complexity 1 29 0 4349 151 16 16 chrX 107299052 107299763 -69674377 + MER50 LTR ERV1 12 722 -12 2846 193 71 47 chrX 107300059 107300979 -69673161 - L1ME3A LINE L1 -4962 1893 960 2052 289 86 21 chrX 107301049 107301711 -69672429 + L1M4b LINE L1 151 855 -6004 36 0 0 0 chrX 107301751 107301787 -69672353 + AT_rich Low_complexity Low_complexity 1 36 0 1114 237 127 40 chrX 107301793 107302296 -69671844 - L1MEc LINE L1 -5052 1344 798 6100 52 13 17 chrX 107302297 107303080 -69671060 - LTR17 LTR ERV1 0 780 1 4065 124 63 63 chrX 107303086 107303701 -69670439 - MER4E LTR ERV1 -5 774 157 2690 146 68 95 chrX 107303701 107304330 -69669810 - LTR9 LTR ERV1 0 612 1 4065 124 63 63 chrX 107304330 107304488 -69669652 - MER4E LTR ERV1 -621 158 1 1295 254 35 48 chrX 107304488 107304633 -69669507 - L1MEc LINE L1 -5593 803 658 3766 129 81 45 chrX 107304633 107305300 -69668840 + LTR8 LTR ERV1 1 691 0 1295 254 35 48 chrX 107305300 107305826 -69668314 - L1MEc LINE L1 -5738 658 36 2675 39 0 0 chrX 107305931 107306241 -69667899 - AluY SINE Alu -1 310 1 1786 177 3 20 chrX 107306425 107306724 -69667416 - AluJo SINE Alu -18 294 1 661 237 88 65 chrX 107306724 107307156 -69666984 - L1MC5 LINE L1 -83 7878 7431 2207 121 0 0 chrX 107307156 107307453 -69666687 - AluSx SINE Alu -15 297 1 661 237 88 65 chrX 107307453 107307530 -69666610 - L1MC5 LINE L1 -530 7431 7357 303 343 0 0 chrX 107307539 107307609 -69666531 + MER58 DNA MER1_type 1 70 -316 236 244 51 39 chrX 107308408 107308486 -69665654 - L2 LINE L2 -964 2350 2272 465 283 114 13 chrX 107308529 107308766 -69665374 + L2 LINE L2 2153 2413 -901 23 33 0 0 chrX 107309022 107309052 -69665088 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 107309541 107309563 -69664577 + AT_rich Low_complexity Low_complexity 1 22 0 269 269 30 30 chrX 107309577 107309644 -69664496 + L2 LINE L2 3154 3220 -52 253 354 44 76 chrX 107310033 107310191 -69663949 + L2 LINE L2 3097 3249 -23 1013 258 46 70 chrX 107310200 107310431 -69663709 - L2 LINE L2 0 3313 3078 2312 161 30 35 chrX 107310431 107310646 -69663494 + MSTB1 LTR MaLR 1 215 -217 2118 135 0 0 chrX 107310646 107310942 -69663198 - AluSx SINE Alu -16 296 1 2312 161 30 35 chrX 107310942 107311160 -69662980 + MSTB1 LTR MaLR 215 432 0 1013 258 46 70 chrX 107311160 107311418 -69662722 - L2 LINE L2 -235 3078 2797 22 35 0 0 chrX 107312287 107312316 -69661824 + AT_rich Low_complexity Low_complexity 1 29 0 423 0 0 0 chrX 107312816 107312863 -69661277 + (TG)n Simple_repeat Simple_repeat 2 48 0 2059 109 23 0 chrX 107312863 107313165 -69660975 - MER7A DNA MER2_type -1 345 39 282 143 0 0 chrX 107313165 107313214 -69660926 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 264 44 44 chrX 107313230 107313321 -69660819 + L2 LINE L2 3223 3313 0 322 313 47 0 chrX 107313957 107314085 -69660055 + MIR3 SINE MIR 69 202 -6 21 0 0 0 chrX 107314312 107314333 -69659807 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrX 107314484 107314506 -69659634 + (A)n Simple_repeat Simple_repeat 1 22 0 559 286 48 9 chrX 107314740 107314950 -69659190 - MIR SINE MIR -27 235 18 183 370 41 14 chrX 107315661 107315734 -69658406 - L2 LINE L2 -47 3225 3151 209 33 33 0 chrX 107315944 107315974 -69658166 + (TC)n Simple_repeat Simple_repeat 2 32 0 2393 68 3 0 chrX 107316132 107316426 -69657714 + AluSp SINE Alu 1 295 -18 217 275 55 92 chrX 107317594 107317703 -69656437 - L2 LINE L2 0 3272 3168 2305 106 0 3 chrX 107318487 107318789 -69655351 - AluSx SINE Alu -11 301 1 201 254 0 0 chrX 107319148 107319207 -69654933 + A-rich Low_complexity Low_complexity 1 59 0 335 252 104 0 chrX 107319727 107319842 -69654298 + L2 LINE L2 2935 3061 -252 2195 163 12 27 chrX 107319856 107320260 -69653880 - MER54A LTR ERVL 0 901 504 2449 182 98 31 chrX 107320265 107320614 -69653526 + LTR27 LTR ERV1 15 420 -216 324 48 0 0 chrX 107320614 107320656 -69653484 + (TCCCC)n Simple_repeat Simple_repeat 1 42 0 2449 182 98 31 chrX 107320656 107320889 -69653251 + LTR27 LTR ERV1 420 636 0 2851 152 40 6 chrX 107320898 107321377 -69652763 - MER54A LTR ERVL -405 496 2 630 263 32 46 chrX 107321385 107321602 -69652538 + L2 LINE L2 3100 3313 0 22 0 0 0 chrX 107322444 107322466 -69651674 + AT_rich Low_complexity Low_complexity 1 22 0 2182 110 3 3 chrX 107322466 107322758 -69651382 - AluSx SINE Alu -20 292 1 572 187 43 14 chrX 107322935 107323074 -69651066 - L1MD2 LINE L1 -10 6349 6207 1756 178 0 3 chrX 107323522 107323826 -69650314 - AluJo SINE Alu -9 303 1 356 338 22 44 chrX 107324020 107324248 -69649892 - MIR SINE MIR -17 245 23 569 306 79 9 chrX 107325075 107325304 -69648836 + MIR SINE MIR 13 257 -5 304 267 33 54 chrX 107325319 107325559 -69648581 - HAL1b LINE L1 -893 455 221 565 274 73 17 chrX 107325611 107325790 -69648350 + MIR SINE MIR 74 262 0 292 260 39 29 chrX 107327583 107327687 -69646453 + MIR SINE MIR 143 247 -15 260 273 13 0 chrX 107328188 107328265 -69645875 + CT-rich Low_complexity Low_complexity 1 78 0 4065 138 13 39 chrX 107328569 107329357 -69644783 - L1MA4 LINE L1 -4 7715 6949 607 111 0 0 chrX 107329363 107329453 -69644687 + L1 LINE L1 4863 4952 -1194 10945 198 93 14 chrX 107329459 107332596 -69641544 - L1MA4 LINE L1 -743 6822 3933 2019 141 20 0 chrX 107332596 107332900 -69641240 - AluSx SINE Alu -2 310 1 10945 198 93 14 chrX 107332900 107335576 -69638564 - L1MA4 LINE L1 -3632 3933 12 192 40 0 0 chrX 107335605 107335630 -69638510 + (TG)n Simple_repeat Simple_repeat 2 26 0 210 135 0 0 chrX 107335665 107335678 -69638462 + (TA)n Simple_repeat Simple_repeat 2 14 -24 2529 182 10 6 chrX 107335678 107336157 -69637983 - L1MB3 LINE L1 -17 6166 5686 210 135 0 0 chrX 107336157 107336180 -69637960 + (TA)n Simple_repeat Simple_repeat 13 38 0 315 356 0 0 chrX 107336183 107336298 -69637842 + L1MC4 LINE L1 6589 6703 -1339 230 273 23 0 chrX 107336333 107336421 -69637719 - L1MC4 LINE L1 -1339 6703 6614 596 194 18 24 chrX 107336421 107336591 -69637549 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 287 267 20 0 chrX 107336608 107336709 -69637431 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 234 0 0 0 chrX 107336724 107336750 -69637390 + (CA)n Simple_repeat Simple_repeat 2 27 0 757 163 15 0 chrX 107336811 107336946 -69637194 + L1MB3 LINE L1 5950 6086 -97 354 23 0 0 chrX 107336946 107336989 -69637151 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2068 195 68 44 chrX 107337020 107337919 -69636221 - L1M3 LINE L1 -501 5682 4745 637 152 0 0 chrX 107337921 107338020 -69636120 - L1M3 LINE L1 -590 5581 5483 2284 103 7 0 chrX 107338798 107339100 -69635040 + AluSx SINE Alu 1 304 -8 21 0 0 0 chrX 107339736 107339757 -69634383 + AT_rich Low_complexity Low_complexity 1 21 0 498 336 60 20 chrX 107340443 107340693 -69633447 - MIR SINE MIR -1 261 2 236 237 51 0 chrX 107340704 107340763 -69633377 + L2 LINE L2 3242 3303 -10 368 323 81 46 chrX 107341072 107341465 -69632675 + L2 LINE L2 2375 2781 -533 192 40 0 0 chrX 107341544 107341569 -69632571 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2537 54 0 6 chrX 107342102 107342415 -69631725 - AluY SINE Alu 0 311 1 712 144 0 25 chrX 107342416 107342534 -69631606 - FRAM SINE Alu -13 163 49 296 262 107 0 chrX 107342791 107342913 -69631227 + L1ME LINE L1 5694 5828 -293 1677 176 3 14 chrX 107342944 107343240 -69630900 - AluJo SINE Alu -19 293 1 451 293 30 30 chrX 107343431 107343564 -69630576 - L2 LINE L2 -1 3312 3180 225 0 0 0 chrX 107343568 107343593 -69630547 + (TA)n Simple_repeat Simple_repeat 2 26 0 235 230 14 68 chrX 107343617 107343691 -69630449 - MLT1K LTR MaLR -5 583 514 1037 226 33 0 chrX 107343898 107344110 -69630030 + MER20 DNA MER1_type 1 219 0 1066 251 15 15 chrX 107344207 107344466 -69629674 - MIR SINE MIR 0 262 4 442 296 17 47 chrX 107344509 107344681 -69629459 - MLT1K LTR MaLR -339 249 83 1915 155 3 22 chrX 107344703 107345020 -69629120 + AluJb SINE Alu 1 311 -1 400 338 47 61 chrX 107345072 107345433 -69628707 + L2 LINE L2 2914 3269 -3 287 179 18 0 chrX 107345647 107345703 -69628437 - MIR3 SINE MIR -1 207 151 1591 161 25 85 chrX 107345761 107346255 -69627885 + L1MB1 LINE L1 4978 5457 -711 2031 148 34 23 chrX 107346257 107346609 -69627531 - MER46B DNA MER2_type -5 231 1 3536 160 36 6 chrX 107346629 107347274 -69626866 + L1MB1 LINE L1 5493 6156 -12 26 30 0 0 chrX 107347274 107347307 -69626833 + AT_rich Low_complexity Low_complexity 1 33 0 239 271 80 0 chrX 107347363 107347499 -69626641 - L1M4 LINE L1 -774 5372 5227 21 0 0 0 chrX 107347613 107347634 -69626506 + AT_rich Low_complexity Low_complexity 1 21 0 2143 129 0 0 chrX 107347758 107348053 -69626087 - AluSp SINE Alu -18 295 1 631 193 28 7 chrX 107348666 107348811 -69625329 - MER103 DNA DNA -8 158 11 2196 95 0 16 chrX 107348857 107349161 -69624979 - AluSq SINE Alu -12 301 3 236 114 45 0 chrX 107349369 107349413 -69624727 + CT-rich Low_complexity Low_complexity 2 47 0 1038 238 14 0 chrX 107349422 107349636 -69624504 - U3 snRNA snRNA 0 217 1 458 290 62 26 chrX 107349722 107349974 -69624166 - L1MEc LINE L1 -910 1666 1442 21 0 0 0 chrX 107350131 107350152 -69623988 + GC_rich Low_complexity Low_complexity 1 21 0 1379 237 93 67 chrX 107351249 107351792 -69622348 + HAL1 LINE L1 1274 1836 -671 2230 138 98 20 chrX 107351792 107352189 -69621951 - MSTA LTR MaLR 0 428 1 1379 237 93 67 chrX 107352189 107352257 -69621883 + HAL1 LINE L1 1836 1901 -606 1175 194 17 19 chrX 107352408 107352708 -69621432 + MLT1A1 LTR MaLR 1 364 -1 475 296 0 7 chrX 107352799 107352934 -69621206 + MER94 DNA DNA 1 134 0 21 0 0 0 chrX 107353472 107353493 -69620647 + AT_rich Low_complexity Low_complexity 1 21 0 2246 99 0 10 chrX 107353951 107354263 -69619877 + AluSg1 SINE Alu 1 309 0 906 164 0 13 chrX 107355158 107355310 -69618830 + U1 snRNA snRNA 13 162 -3 207 0 0 0 chrX 107355317 107355340 -69618800 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chrX 107356165 107356191 -69617949 + AT_rich Low_complexity Low_complexity 1 26 0 3405 107 6 10 chrX 107356791 107357288 -69616852 - LOR1a LTR ERV1 -2 495 1 517 298 91 10 chrX 107357558 107357766 -69616374 - MIR SINE MIR -6 256 32 1031 204 18 62 chrX 107357784 107358058 -69616082 + MIR SINE MIR 1 262 0 223 303 101 25 chrX 107358493 107358612 -69615528 + MIR SINE MIR 80 207 -55 281 261 0 0 chrX 107360145 107360210 -69613930 - MIR3 SINE MIR -23 185 121 25 0 0 0 chrX 107360532 107360557 -69613583 + AT_rich Low_complexity Low_complexity 1 25 0 2324 100 3 3 chrX 107360925 107361236 -69612904 + AluSp SINE Alu 1 311 -2 234 81 0 0 chrX 107361448 107361485 -69612655 + (T)n Simple_repeat Simple_repeat 1 37 0 2237 122 70 54 chrX 107412469 107412846 -69561294 + LTR49 LTR ERV1 136 522 -73 1468 231 20 3 chrX 107412846 107413149 -69560991 - 7SLRNA srpRNA srpRNA -12 308 1 2237 122 70 54 chrX 107413149 107413213 -69560927 + LTR49 LTR ERV1 522 584 -11 1142 133 57 63 chrX 107413255 107413524 -69560616 + MER4A LTR ERV1 1 342 -357 1638 97 0 0 chrX 107413616 107413891 -69560249 + AluSg/x SINE Alu 76 350 0 333 229 24 0 chrX 107413938 107414021 -69560119 + MER4C LTR ERV1 178 262 -203 797 206 5 22 chrX 107414101 107414285 -69559855 + MER4C LTR ERV1 285 465 0 1907 194 94 6 chrX 107414288 107414866 -69559274 + MER4C-int LTR ERV1 1 673 -5925 375 113 42 28 chrX 107415194 107415265 -69558875 + MER4C-int LTR ERV1 742 813 -5785 2295 126 17 80 chrX 107415265 107415726 -69558414 + LOR1a LTR ERV1 66 497 0 2023 180 31 26 chrX 107415726 107416143 -69557997 + LOR1a-int LTR ERV1 1 419 -7701 273 68 23 0 chrX 107416173 107416217 -69557923 + LOR1a-int LTR ERV1 403 447 -7673 562 117 6 181 chrX 107416291 107416462 -69557678 + LOR1a-int LTR ERV1 449 589 -7531 679 343 40 31 chrX 107416853 107417524 -69556616 + LOR1a-int LTR ERV1 955 1631 -5491 198 0 0 0 chrX 107417770 107417792 -69556348 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1791 159 167 14 chrX 107417799 107418170 -69555970 + MSTA LTR MaLR 1 428 0 1587 328 57 53 chrX 107418859 107419312 -69554828 + LOR1a-int LTR ERV1 2556 3006 -4116 790 160 0 15 chrX 107419312 107419443 -69554697 - FLAM_C SINE Alu -4 129 1 1587 328 57 53 chrX 107419443 107420671 -69553469 + LOR1a-int LTR ERV1 3006 4244 -2878 585 313 18 26 chrX 107421113 107421481 -69552659 + LOR1a-int LTR ERV1 5372 5736 -2020 * 3470 125 14 12 chrX 107421472 107422108 -69552032 + LOR1a-int LTR ERV1 7168 7878 -242 637 173 0 0 chrX 107422109 107422213 -69551927 + LOR1a-int LTR ERV1 8017 8120 0 2086 152 62 99 chrX 107422213 107422492 -69551648 + LOR1a LTR ERV1 1 254 -243 2700 85 3 0 chrX 107422492 107422846 -69551294 - THE1A LTR MaLR 0 355 1 2086 152 62 99 chrX 107422846 107423080 -69551060 + LOR1a LTR ERV1 254 495 -2 864 170 127 9 chrX 107423109 107423296 -69550844 + LTR29 LTR ERV1 377 618 -4 1572 186 8 65 chrX 107423302 107423572 -69550568 + LTR29-int LTR ERV1 3 287 -5659 2327 89 13 0 chrX 107423572 107423876 -69550264 - AluSx SINE Alu -2 310 3 1572 186 8 65 chrX 107423876 107424053 -69550087 + LTR29-int LTR ERV1 287 1327 -4619 1081 188 26 28 chrX 107424086 107424368 -69549772 + LTR29-int LTR ERV1 355 1480 -4466 976 187 117 31 chrX 107424364 107424891 -69549249 + MER4A-int LTR ERV1 767 1247 -3633 * 2488 108 56 9 chrX 107424891 107425319 -69548821 + LTR7 LTR ERV1 1 448 -2 976 187 117 31 chrX 107425319 107425388 -69548752 + MER4A-int LTR ERV1 1247 1866 -3014 211 229 12 12 chrX 107425389 107425472 -69548668 + (TG)n Simple_repeat Simple_repeat 1 83 0 1096 225 53 69 chrX 107425472 107426185 -69547955 + MER4A-int LTR ERV1 1112 2436 -3510 * 2296 145 90 90 chrX 107426153 107426216 -69547924 + MER4A-int LTR ERV1 2580 2642 -3689 2139 133 0 3 chrX 107426216 107426524 -69547616 + AluSx SINE Alu 1 307 -5 2296 145 90 90 chrX 107426524 107427096 -69547044 + MER4A-int LTR ERV1 2641 3215 -3116 2288 70 18 3 chrX 107427100 107427385 -69546755 + LTR5 LTR ERVK 2 290 -679 1029 84 96 42 chrX 107427404 107427570 -69546570 + LTR5 LTR ERVK 795 969 0 1677 222 62 21 chrX 107427667 107428135 -69546005 + MER4A-int LTR ERV1 2675 3161 -1719 357 24 0 0 chrX 107428136 107428178 -69545962 + (TA)n Simple_repeat Simple_repeat 1 42 0 2765 68 21 5 chrX 107428178 107428561 -69545579 - MLT2A1 LTR ERVL -55 389 1 1246 154 97 0 chrX 107428564 107428811 -69545329 + MER4A-int LTR ERV1 4530 4800 -3320 344 94 0 0 chrX 107428811 107428864 -69545276 + MLT2A2 LTR ERVL 401 453 0 954 159 77 95 chrX 107428865 107429192 -69544948 - LTR49-int LTR ERV1 -2243 4088 3768 4144 141 30 57 chrX 107429194 107429716 -69544424 + MER4A-int LTR ERV1 5048 5583 -1015 2571 41 0 0 chrX 107429716 107430011 -69544129 - AluY SINE Alu -12 299 5 4144 141 30 57 chrX 107430011 107430609 -69543531 + MER4A-int LTR ERV1 5583 6584 -14 1276 120 65 151 chrX 107430632 107431107 -69543033 + MER4A LTR ERV1 1 522 -177 695 223 11 22 chrX 107431119 107431303 -69542837 + MER4C LTR ERV1 276 457 -8 189 350 70 10 chrX 107431627 107431727 -69542413 + MIR3 SINE MIR 54 159 -49 24 53 0 0 chrX 107432340 107432378 -69541762 + AT_rich Low_complexity Low_complexity 1 38 0 459 284 116 47 chrX 107432514 107432729 -69541411 + MIR SINE MIR 26 255 -7 406 332 93 45 chrX 107432982 107433271 -69540869 - L2 LINE L2 0 3272 2970 195 369 76 55 chrX 107433321 107433980 -69540160 - L2 LINE L2 -456 2858 2186 2335 181 54 27 chrX 107434064 107434621 -69539519 - LTR49 LTR ERV1 -23 572 1 1374 259 34 77 chrX 107434747 107434872 -69539268 + MLT1F LTR MaLR 1 130 -412 2212 110 7 7 chrX 107434872 107435173 -69538967 + AluSx SINE Alu 1 301 -11 1374 259 34 77 chrX 107435173 107435603 -69538537 + MLT1F LTR MaLR 130 532 -10 1656 53 0 0 chrX 107435787 107435994 -69538146 + L1PA5 LINE L1 5948 6154 0 432 246 9 44 chrX 107435999 107436113 -69538027 - MER81 DNA DNA -4 110 1 299 294 69 0 chrX 107436124 107436226 -69537914 + L2 LINE L2 3205 3313 0 377 343 39 17 chrX 107436346 107436524 -69537616 - L2 LINE L2 -485 2829 2648 2007 95 0 4 chrX 107436801 107437074 -69537066 + AluY SINE Alu 1 272 -39 465 84 0 28 chrX 107437642 107437736 -69536404 - AluY SINE Alu 0 311 218 23 0 0 0 chrX 107438139 107438162 -69535978 + AT_rich Low_complexity Low_complexity 1 23 0 342 244 1 86 chrX 107439265 107439405 -69534735 - MLT1J LTR MaLR -306 144 25 288 331 39 15 chrX 107439487 107439617 -69534523 - L2 LINE L2 -611 2703 2571 2266 126 3 0 chrX 107440108 107440417 -69533723 + AluSx SINE Alu 1 310 -2 200 359 0 0 chrX 107440872 107440950 -69533190 + (CCCTG)n Simple_repeat Simple_repeat 3 80 0 2429 78 3 7 chrX 107440963 107441272 -69532868 - AluSq SINE Alu 0 313 6 203 286 0 0 chrX 107441394 107441457 -69532683 + (CCCTG)n Simple_repeat Simple_repeat 5 67 0 1142 219 140 58 chrX 107442318 107442734 -69531406 + MLT1D LTR MaLR 1 460 -45 2213 138 105 8 chrX 107442734 107443124 -69531016 - MSTA LTR MaLR 0 428 1 1142 219 140 58 chrX 107443124 107443172 -69530968 + MLT1D LTR MaLR 460 503 -2 3382 197 27 91 chrX 107443175 107444166 -69529974 + MLT1D-int LTR MaLR 1 928 -443 1650 220 93 4 chrX 107444176 107444671 -69529469 + L1ME2 LINE L1 5625 6163 -1 543 329 139 4 chrX 107444759 107445051 -69529089 + L2 LINE L2 2739 3067 -246 3945 205 66 53 chrX 107445054 107446340 -69527800 - L1MB7 LINE L1 -16 6666 5397 2228 72 7 20 chrX 107446340 107446632 -69527508 + AluSx SINE Alu 24 311 -1 3945 205 66 53 chrX 107446632 107447467 -69526673 - L1MB7 LINE L1 -1285 5397 4488 1806 74 5 0 chrX 107447467 107447684 -69526456 - AluSg SINE Alu -77 233 16 3945 205 66 53 chrX 107447684 107447837 -69526303 - L1MB7 LINE L1 -2194 4488 4338 1738 249 33 24 chrX 107447833 107448035 -69526105 - L1MB7 LINE L1 -5984 558 359 * 1509 201 35 51 chrX 107448035 107448429 -69525711 + MLT1B LTR MaLR 3 390 0 1738 249 33 24 chrX 107448429 107448775 -69525365 - L1MB7 LINE L1 -6183 359 5 1630 180 0 27 chrX 107448865 107449160 -69524980 + AluJo SINE Alu 1 287 -25 323 271 25 91 chrX 107449173 107449372 -69524768 + L2 LINE L2 3127 3312 -1 194 281 52 62 chrX 107449368 107449464 -69524676 - L2 LINE L2 -10 3262 3168 * 470 254 22 0 chrX 107450054 107450192 -69523948 - L1ME2 LINE L1 -215 5949 5809 248 313 21 0 chrX 107450847 107450943 -69523197 - L1MC3 LINE L1 -1629 6156 6059 486 287 50 58 chrX 107451320 107451578 -69522562 + MIR SINE MIR 3 258 -4 2244 121 0 0 chrX 107451683 107451990 -69522150 + AluSx SINE Alu 6 312 0 1031 267 20 82 chrX 107452202 107452270 -69521870 - LTR16B LTR ERVL 0 464 393 2420 90 0 3 chrX 107452270 107452581 -69521559 + AluSg SINE Alu 1 310 0 1031 267 20 82 chrX 107452581 107452999 -69521141 - LTR16B LTR ERVL -71 393 8 2004 141 26 32 chrX 107453010 107453387 -69520753 - THE1C LTR MaLR 0 375 1 239 241 0 0 chrX 107453445 107453503 -69520637 + L1ME LINE L1 5604 5661 -460 200 98 0 24 chrX 107453592 107453633 -69520507 + (TAAAA)n Simple_repeat Simple_repeat 5 44 0 3143 42 0 0 chrX 107454031 107454410 -69519730 - L1PA7 LINE L1 -8 6146 5768 2290 78 0 0 chrX 107454549 107454853 -69519287 - AluSg SINE Alu 0 304 1 27 29 0 0 chrX 107455362 107455396 -69518744 + AT_rich Low_complexity Low_complexity 1 34 0 1775 208 66 33 chrX 107455654 107456136 -69518004 - MLT1D LTR MaLR -7 498 1 361 236 132 0 chrX 107456376 107456482 -69517658 - L2 LINE L2 0 3313 3194 1178 172 54 93 chrX 107456498 107457063 -69517077 + MER4A LTR ERV1 1 465 0 245 273 162 10 chrX 107457083 107457182 -69516958 - L2 LINE L2 -164 3149 3036 180 77 0 0 chrX 107457186 107457212 -69516928 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 404 277 164 13 chrX 107457341 107457500 -69516640 + MER5A DNA MER1_type 1 183 -6 7223 42 0 10 chrX 107457616 107458554 -69515586 - L1PA5 LINE L1 -1 6153 5213 189 311 27 27 chrX 107459011 107459085 -69515055 - L2 LINE L2 -830 2484 2411 24 0 0 0 chrX 107459532 107459556 -69514584 + AT_rich Low_complexity Low_complexity 1 24 0 2292 52 13 33 chrX 107459608 107459913 -69514227 - AluY SINE Alu -12 299 1 234 62 0 0 chrX 107460195 107460227 -69513913 + (GA)n Simple_repeat Simple_repeat 2 33 0 1799 282 56 40 chrX 107460565 107461573 -69512567 + L1ME LINE L1 6 1029 -5041 1953 136 0 30 chrX 107461955 107462256 -69511884 - AluSx SINE Alu -20 292 1 2079 130 0 34 chrX 107462536 107462859 -69511281 + AluSx SINE Alu 1 312 0 37 76 0 0 chrX 107463468 107463547 -69510593 + AT_rich Low_complexity Low_complexity 1 79 0 23 0 0 0 chrX 107463623 107463646 -69510494 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chrX 107463956 107463979 -69510161 + AT_rich Low_complexity Low_complexity 1 23 0 375 273 0 0 chrX 107464031 107464119 -69510021 - MIR SINE MIR -1 261 174 282 363 27 0 chrX 107464663 107464809 -69509331 - MIR SINE MIR -50 212 63 1202 147 37 6 chrX 107465263 107465671 -69508469 - LTR54 LTR ERV1 0 510 5 484 213 22 59 chrX 107466061 107466086 -69508054 + MLT1A2 LTR MaLR 145 169 -205 1851 118 107 11 chrX 107466086 107466366 -69507774 + AluSx SINE Alu 3 309 -3 484 213 22 59 chrX 107466366 107466476 -69507664 + MLT1A2 LTR MaLR 169 275 -99 628 144 15 30 chrX 107466805 107466937 -69507203 - L1 LINE L1 -1920 4226 4097 3446 102 45 6 chrX 107466972 107467464 -69506676 + MER9 LTR ERVK 1 511 0 914 244 36 17 chrX 107467478 107467839 -69506301 - L1M4b LINE L1 -3400 3557 3190 2727 133 14 7 chrX 107467848 107468269 -69505871 - MSTB LTR MaLR -2 424 1 187 329 40 40 chrX 107468354 107468430 -69505710 - L2 LINE L2 -336 2977 2902 793 162 45 7 chrX 107468775 107468981 -69505159 + L1M4 LINE L1 5260 5474 -704 2313 91 7 0 chrX 107469023 107469321 -69504819 - AluSp SINE Alu -13 300 1 308 285 40 36 chrX 107469330 107469607 -69504533 - L1M4b LINE L1 -5262 1685 1328 455 226 16 97 chrX 107469830 107470016 -69504124 + MER58C DNA MER1_type 45 215 0 411 269 28 0 chrX 107470458 107470566 -69503574 - MIR SINE MIR -68 194 84 532 86 0 12 chrX 107471075 107471156 -69502984 + MADE1 DNA Mariner 1 80 0 910 245 47 47 chrX 107471781 107472161 -69501979 + LTR40c LTR ERVL 1 380 -85 798 267 21 21 chrX 107472225 107472465 -69501675 - MLT1H1 LTR MaLR -25 530 291 750 278 14 5 chrX 107472581 107472793 -69501347 + L1M3d LINE L1 381 594 -5677 2302 271 19 35 chrX 107472798 107473542 -69500598 + L1M3d LINE L1 30 761 -5520 1823 285 40 45 chrX 107473646 107474633 -69499507 + L1M3d LINE L1 630 1719 -4552 2037 205 95 30 chrX 107474736 107475337 -69498803 + LTR48B LTR ERV1 1 640 -4 2168 55 37 0 chrX 107475499 107475818 -69498322 + AluY SINE Alu 1 329 0 2437 86 133 5 chrX 107476518 107476915 -69497225 + LTR7 LTR ERV1 1 448 -2 15679 95 26 22 chrX 107476917 107479832 -69494308 + HERVH LTR ERV1 1 2995 -4718 5728 93 3 2 chrX 107479811 107480663 -69493477 + HERVH LTR ERV1 3140 3992 -3721 * 1166 137 0 0 chrX 107480666 107480849 -69493291 + HERVH LTR ERV1 4488 4670 -3043 * 3296 173 0 3 chrX 107480846 107481420 -69492720 + HERVH LTR ERV1 4575 5146 -2567 1290 134 19 0 chrX 107481424 107481640 -69492500 + HERVH LTR ERV1 5600 5819 -1894 2063 118 48 13 chrX 107481640 107482013 -69492127 + HERVH LTR ERV1 7324 7709 -4 2570 247 12 27 chrX 107482070 107482533 -69491607 + MER21B LTR ERV1 1 469 -394 2463 84 0 6 chrX 107482533 107482844 -69491296 - AluSx SINE Alu -3 309 1 2570 247 12 27 chrX 107482844 107482874 -69491266 + MER21B LTR ERV1 469 498 -365 2135 103 3 0 chrX 107482874 107483179 -69490961 + AluSq SINE Alu 1 306 0 2570 247 12 27 chrX 107483179 107483347 -69490793 + MER21B LTR ERV1 498 654 -209 1023 154 0 6 chrX 107483349 107483505 -69490635 + AluSc SINE Alu 131 285 -24 2162 113 7 0 chrX 107483514 107483837 -69490303 + AluSx SINE Alu 1 325 0 304 256 0 0 chrX 107483837 107483915 -69490225 + LTR1B LTR ERV1 7 84 -742 189 0 0 0 chrX 107483928 107483949 -69490191 + (A)n Simple_repeat Simple_repeat 1 21 0 520 254 29 19 chrX 107483963 107484168 -69489972 - LTR7 LTR ERV1 -6 444 238 1558 166 52 4 chrX 107484418 107484689 -69489451 + AluJb SINE Alu 3 286 -26 24 0 0 0 chrX 107484692 107484716 -69489424 + AT_rich Low_complexity Low_complexity 1 24 0 2400 56 0 0 chrX 107484716 107485020 -69489120 + AluY SINE Alu 1 304 0 235 368 16 24 chrX 107485400 107485525 -69488615 + L2 LINE L2 2943 3066 -206 617 287 86 10 chrX 107485551 107485760 -69488380 + MIR SINE MIR 38 262 0 513 235 34 47 chrX 107485940 107486089 -69488051 + L2 LINE L2 3167 3313 0 2012 130 20 7 chrX 107486117 107486418 -69487722 - AluSx SINE Alu -7 305 1 2458 172 55 110 chrX 107486663 107487408 -69486732 + MER50 LTR ERV1 1 704 -30 2716 65 119 5 chrX 107487676 107488078 -69486062 + LTR7 LTR ERV1 1 448 -2 2189 199 46 70 chrX 107488208 107488776 -69485364 + MLT2B3 LTR ERVL 1 554 0 1497 100 60 16 chrX 107488807 107489058 -69485082 + MER4E-int LTR ERV1 3925 4186 -2572 8016 102 33 54 chrX 107489062 107489312 -69484828 + MER4E-int LTR ERV1 4321 4575 -2183 1971 108 11 0 chrX 107489312 107489620 -69484520 + AluSx SINE Alu 1 311 0 8016 102 33 54 chrX 107489620 107490106 -69484034 + MER4E-int LTR ERV1 4575 5070 -1688 1758 147 60 68 chrX 107490106 107490473 -69483667 - THE1B LTR MaLR 0 364 1 8016 102 33 54 chrX 107490473 107490705 -69483435 + MER4E-int LTR ERV1 5070 5306 -1452 2550 44 3 25 chrX 107490705 107491023 -69483117 - AluY SINE Alu 0 311 1 8016 102 33 54 chrX 107491023 107491323 -69482817 + MER4E-int LTR ERV1 5306 5611 -1147 2930 112 12 2 chrX 107491323 107491753 -69482387 - MER57B LTR ERV1 0 434 1 8016 102 33 54 chrX 107491753 107492430 -69481710 + MER4E-int LTR ERV1 5611 6239 -519 2235 103 10 0 chrX 107492430 107492730 -69481410 + AluY SINE Alu 1 303 -8 8016 102 33 54 chrX 107492730 107492967 -69481173 + MER4E-int LTR ERV1 6239 6480 -278 1074 121 0 0 chrX 107492967 107493108 -69481032 + AluSq/x SINE Alu 1 141 -172 649 137 0 0 chrX 107493122 107493217 -69480923 - AluSg/x SINE Alu -17 292 198 1036 105 0 0 chrX 107493217 107493350 -69480790 + AluSg/x SINE Alu 166 298 -12 1678 90 23 63 chrX 107493350 107493588 -69480552 + MER4E-int LTR ERV1 6471 6696 -62 4546 106 55 40 chrX 107493588 107494033 -69480107 + MER4E LTR ERV1 2 464 -315 2249 103 6 6 chrX 107494033 107494344 -69479796 - AluSq SINE Alu -2 311 1 4546 106 55 40 chrX 107494344 107494665 -69479475 + MER4E LTR ERV1 464 779 0 1678 90 23 63 chrX 107494665 107494726 -69479414 + MER4E-int LTR ERV1 6696 6758 0 1987 136 69 73 chrX 107494726 107495066 -69479074 + MER4B LTR ERV1 1 340 -270 2213 111 3 0 chrX 107495066 107495354 -69478786 - AluSq SINE Alu -24 289 1 1987 136 69 73 chrX 107495354 107495463 -69478677 + MER4B LTR ERV1 340 448 -162 1575 176 106 31 chrX 107495466 107495891 -69478249 - LTR2B LTR ERV1 0 490 34 1019 106 0 0 chrX 107495915 107496057 -69478083 + MER4A LTR ERV1 506 647 -17 418 244 0 0 chrX 107496057 107496143 -69477997 - AluJ/FLAM SINE Alu -226 86 1 2147 130 0 7 chrX 107496289 107496590 -69477550 - AluSx SINE Alu -13 299 1 517 346 35 29 chrX 107496599 107496973 -69477167 - L2 LINE L2 -230 3042 2411 818 141 50 15 chrX 107496973 107497171 -69476969 - L1MA8 LINE L1 -5 6286 6082 226 116 23 0 chrX 107497205 107497248 -69476892 + L1MA8 LINE L1 6069 6112 -179 * 2875 149 19 28 chrX 107497227 107497790 -69476350 - L1MA8 LINE L1 -204 6087 5530 238 250 68 11 chrX 107497913 107498001 -69476139 - MLT1I LTR MaLR 0 409 317 374 276 60 9 chrX 107498126 107498242 -69475898 - MLT1I LTR MaLR -204 205 84 243 240 0 0 chrX 107498597 107498647 -69475493 - L2 LINE L2 -76 3237 3188 207 0 0 0 chrX 107498865 107498888 -69475252 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1992 92 44 7 chrX 107498895 107499167 -69474973 - AluSg1 SINE Alu -27 282 1 1878 155 10 0 chrX 107499491 107499782 -69474358 + AluSx SINE Alu 1 294 -18 2029 136 0 3 chrX 107499785 107500110 -69474030 + AluSx SINE Alu 1 312 0 2161 109 10 0 chrX 107500467 107500761 -69473379 + AluY SINE Alu 1 297 -14 2687 93 3 0 chrX 107500806 107501160 -69472980 + THE1A LTR MaLR 1 355 0 2178 92 0 3 chrX 107501219 107501522 -69472618 + AluSq SINE Alu 1 302 0 2248 116 0 3 chrX 107501590 107501893 -69472247 + AluSg SINE Alu 1 302 -8 1131 185 105 32 chrX 107503159 107503473 -69470667 + MLT1D LTR MaLR 1 337 -168 198 324 27 14 chrX 107503655 107503729 -69470411 + L3 LINE CR1 1486 1560 -17 448 298 8 0 chrX 107503904 107504025 -69470115 + L2 LINE L2 3192 3313 0 375 331 25 25 chrX 107504286 107504446 -69469694 + L3 LINE CR1 492 651 -926 1439 188 38 48 chrX 107504449 107504742 -69469398 - AluJo SINE Alu -17 295 6 497 290 284 28 chrX 107504758 107505258 -69468882 + L3 LINE CR1 639 1266 -311 270 329 51 0 chrX 107505268 107505347 -69468793 + MIR SINE MIR 6 88 -174 1435 213 130 84 chrX 107505347 107505829 -69468311 - MER39 LTR ERV1 0 707 184 1845 178 0 6 chrX 107505829 107506143 -69467997 - AluJo SINE Alu 0 312 1 1435 213 130 84 chrX 107506143 107506327 -69467813 - MER39 LTR ERV1 -523 184 10 292 153 0 34 chrX 107506336 107506395 -69467745 + MIR SINE MIR 85 141 -121 24 0 0 0 chrX 107506449 107506473 -69467667 + AT_rich Low_complexity Low_complexity 1 24 0 204 310 18 44 chrX 107506554 107506667 -69467473 + MIR SINE MIR 146 255 -7 318 276 0 0 chrX 107506678 107506754 -69467386 + MIR SINE MIR 165 240 -22 2463 96 0 25 chrX 107506773 107507110 -69467030 - L1PA14 LINE L1 -2 6159 5830 2187 126 33 0 chrX 107507110 107507412 -69466728 - AluSx SINE Alu 0 312 1 2463 96 0 25 chrX 107507412 107507439 -69466701 - L1PA14 LINE L1 -331 5830 5804 348 118 0 0 chrX 107507741 107507792 -69466348 + L2 LINE L2 3256 3306 -7 724 97 56 81 chrX 107507828 107507880 -69466260 - MER39B LTR ERV1 -1 652 600 3749 110 18 18 chrX 107507880 107508445 -69465695 + MER61E LTR ERV1 1 565 -4 724 97 56 81 chrX 107508445 107508570 -69465570 - MER39B LTR ERV1 -53 600 454 427 65 0 0 chrX 107508570 107508632 -69465508 - MER57B LTR ERV1 -2 432 371 1455 101 0 0 chrX 107508633 107508832 -69465308 - MER57B LTR ERV1 -235 199 1 1617 101 260 6 chrX 107508837 107509175 -69464965 - LTR29 LTR ERV1 -198 424 1 2032 136 34 0 chrX 107509899 107510193 -69463947 - AluSx SINE Alu -7 305 2 405 269 70 31 chrX 107512427 107512684 -69461456 - L1MC4a LINE L1 -1876 5932 5666 28 0 0 0 chrX 107512727 107512755 -69461385 + AT_rich Low_complexity Low_complexity 1 28 0 209 289 105 61 chrX 107512788 107512902 -69461238 - L2 LINE L2 -23 3290 3172 203 346 55 39 chrX 107513030 107513157 -69460983 - L2 LINE L2 -241 3031 2903 1912 119 22 7 chrX 107513544 107513855 -69460285 - AluSx SINE Alu 0 315 1 180 77 0 0 chrX 107514104 107514130 -69460010 + (TTA)n Simple_repeat Simple_repeat 2 27 0 699 275 78 59 chrX 107514184 107514558 -69459582 - MLT1J1 LTR MaLR 0 446 66 7076 56 0 4 chrX 107515311 107516298 -69457842 - L1PA6 LINE L1 -5 6149 5163 4582 212 92 50 chrX 107516399 107518032 -69456108 - L1MC4 LINE L1 0 8042 6342 445 263 113 8 chrX 107518035 107518168 -69455972 - L1MC4a LINE L1 -1480 6328 6182 21 57 0 0 chrX 107518285 107518320 -69455820 + AT_rich Low_complexity Low_complexity 1 35 0 6748 56 0 0 chrX 107518849 107519927 -69454213 - L1PA5 LINE L1 0 6154 5104 27 29 0 0 chrX 107520019 107520053 -69454087 + AT_rich Low_complexity Low_complexity 1 34 0 36 53 0 0 chrX 107520267 107520324 -69453816 + AT_rich Low_complexity Low_complexity 1 57 0 1662 173 0 24 chrX 107520324 107520613 -69453527 + AluJo SINE Alu 1 282 -30 198 0 0 0 chrX 107520885 107520907 -69453233 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 32 43 0 0 chrX 107520990 107521036 -69453104 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chrX 107521046 107521082 -69453058 + AT_rich Low_complexity Low_complexity 1 36 0 2146 98 4 0 chrX 107521118 107521392 -69452748 - AluSq SINE Alu -38 275 1 262 297 126 18 chrX 107521958 107522069 -69452071 + L2 LINE L2 2222 2344 -970 265 249 55 55 chrX 107522136 107522301 -69451839 + L1M4 LINE L1 2679 2843 -3303 513 249 49 41 chrX 107522374 107522652 -69451488 - L1M4 LINE L1 -3828 2816 2535 16931 159 25 14 chrX 107522686 107522867 -69451273 + L1MA2 LINE L1 20 198 -7525 1887 142 10 10 chrX 107522867 107523170 -69450970 - AluJo SINE Alu -9 303 1 226 158 0 0 chrX 107523171 107523209 -69450931 - Alu SINE Alu -252 50 13 16931 159 25 14 chrX 107523209 107527091 -69447049 + L1MA2 LINE L1 198 4691 -3032 1733 175 7 0 chrX 107527091 107527360 -69446780 + AluJb SINE Alu 3 273 -39 16931 159 25 14 chrX 107527360 107530427 -69443713 + L1MA2 LINE L1 4691 7723 0 3149 236 64 39 chrX 107530520 107531357 -69442783 - L1M4 LINE L1 -4203 2443 1465 2241 120 3 0 chrX 107531357 107531657 -69442483 - AluSq SINE Alu -12 301 1 3149 236 64 39 chrX 107531657 107532163 -69441977 - L1M4 LINE L1 -5181 1465 973 996 153 0 0 chrX 107532185 107532335 -69441805 - AluJb SINE Alu -26 286 137 2438 249 62 45 chrX 107532343 107532731 -69441409 - L1M4 LINE L1 -5556 986 606 1654 162 63 33 chrX 107532731 107533034 -69441106 - AluJo SINE Alu 0 312 1 2438 249 62 45 chrX 107533034 107533605 -69440535 - L1M4 LINE L1 -5936 606 10 216 97 0 0 chrX 107534324 107534355 -69439785 + (GAAAA)n Simple_repeat Simple_repeat 2 32 0 814 118 0 7 chrX 107534963 107535098 -69439042 + L1PA6 LINE L1 6021 6154 0 784 272 62 5 chrX 107535487 107535711 -69438429 + MIR SINE MIR 26 262 0 374 277 75 11 chrX 107535805 107535899 -69438241 + L2 LINE L2 3134 3233 -39 234 303 45 0 chrX 107539274 107539340 -69434800 + MIR SINE MIR 42 110 -98 204 114 0 29 chrX 107539392 107539427 -69434713 + (ATG)n Simple_repeat Simple_repeat 2 35 0 990 246 48 89 chrX 107540174 107540735 -69433405 + MER34 LTR ERV1 2 539 -3 2447 99 0 0 chrX 107540832 107541145 -69432995 + AluSq SINE Alu 1 313 0 560 265 142 19 chrX 107541326 107541537 -69432603 - MIR SINE MIR -18 244 8 283 339 57 0 chrX 107542615 107542739 -69431401 + L2 LINE L2 2842 2972 -341 1140 244 99 9 chrX 107542932 107543264 -69430876 + MER67C LTR ERV1 1 362 -348 501 247 93 6 chrX 107543256 107543418 -69430722 + MER67C LTR ERV1 472 647 -63 * 460 192 20 0 chrX 107543445 107543544 -69430596 + MER67C LTR ERV1 610 710 0 304 386 9 0 chrX 107543548 107543662 -69430478 + L2 LINE L2 3158 3272 0 597 313 43 19 chrX 107543728 107543939 -69430201 + MIR SINE MIR 34 249 -13 242 203 40 40 chrX 107544514 107544588 -69429552 - MER34 LTR ERV1 -16 526 453 2344 105 16 29 chrX 107544667 107545047 -69429093 + THE1C LTR MaLR 1 375 0 2067 131 0 7 chrX 107545074 107545387 -69428753 + AluSx SINE Alu 4 312 0 764 187 82 91 chrX 107545394 107545724 -69428416 - MER34C LTR ERV1 -229 356 45 360 0 0 0 chrX 107545844 107545884 -69428256 + (TG)n Simple_repeat Simple_repeat 2 41 0 359 219 14 0 chrX 107546433 107546506 -69427634 - MARNA DNA Mariner -355 231 158 287 291 55 36 chrX 107546744 107546854 -69427286 - MARNA DNA Mariner -465 121 10 544 261 45 19 chrX 107547206 107547639 -69426501 - L1MCc LINE L1 -3913 3053 2570 1081 320 43 24 chrX 107547674 107548090 -69426050 - LTR16A LTR ERVL -6 444 21 254 189 19 0 chrX 107548111 107548164 -69425976 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 227 231 0 0 chrX 107548170 107548235 -69425905 - L1MCc LINE L1 -4823 2118 2054 3530 125 54 23 chrX 107548236 107548574 -69425566 - MER73 LTR ERVL -1 643 317 321 47 0 0 chrX 107548574 107548617 -69425523 + (TC)n Simple_repeat Simple_repeat 2 44 0 3530 125 54 23 chrX 107548617 107548726 -69425414 - MER73 LTR ERVL -327 317 213 4352 99 28 6 chrX 107548726 107549365 -69424775 + MER39B LTR ERV1 1 653 0 3530 125 54 23 chrX 107549365 107549526 -69424614 - MER73 LTR ERVL -431 213 15 335 276 37 22 chrX 107549527 107549661 -69424479 - L1MCc LINE L1 -5019 2103 1968 717 278 49 33 chrX 107549679 107550205 -69423935 - L1MCc LINE L1 -4916 1507 1168 332 231 0 0 chrX 107550701 107550766 -69423374 + MER5A DNA MER1_type 42 106 -83 227 308 167 17 chrX 107550777 107551076 -69423064 - HAL1 LINE L1 -915 1592 1249 851 226 50 73 chrX 107551086 107551347 -69422793 + MIR SINE MIR 3 257 -5 257 287 39 8 chrX 107551351 107551480 -69422660 - HAL1 LINE L1 -1262 1245 1113 2258 114 7 0 chrX 107552433 107552741 -69421399 + AluSx SINE Alu 1 310 -2 2198 141 11 8 chrX 107553126 107553496 -69420644 - L1MC1 LINE L1 0 6613 6243 1935 116 119 6 chrX 107553506 107553833 -69420307 + THE1B LTR MaLR 1 364 0 10878 96 36 10 chrX 107553833 107555368 -69418772 + THE1B-int LTR MaLR 1 1574 -6 2072 154 28 6 chrX 107555373 107555729 -69418411 + THE1B LTR MaLR 1 364 0 3861 199 33 11 chrX 107555730 107556307 -69417833 - L1MC1 LINE L1 -377 6236 5673 270 0 0 0 chrX 107556307 107556337 -69417803 + (TA)n Simple_repeat Simple_repeat 1 30 0 3861 199 33 11 chrX 107556337 107557217 -69416923 - L1MC1 LINE L1 -940 5673 4754 2232 176 15 55 chrX 107557242 107557715 -69416425 - L1PB4 LINE L1 -19 6137 5684 7324 220 73 12 chrX 107557734 107560179 -69413961 - L1MC1 LINE L1 -1677 4749 1942 1991 128 0 50 chrX 107560179 107560500 -69413640 - AluSq SINE Alu -8 305 1 7324 220 73 12 chrX 107560500 107561181 -69412959 - L1MC1 LINE L1 -4484 1942 1304 182 62 31 0 chrX 107561182 107561214 -69412926 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 4921 64 8 3 chrX 107561214 107561843 -69412297 - L1PA7 LINE L1 -12 6142 5511 500 205 71 9 chrX 107561843 107561955 -69412185 - LTR12 LTR ERV1 -241 473 355 328 206 0 0 chrX 107561955 107562023 -69412117 - LTR30 LTR ERV1 -102 620 553 784 158 235 17 chrX 107562024 107562258 -69411882 - LTR12 LTR ERV1 -429 285 1 31146 118 13 63 chrX 107562258 107568069 -69406071 - L1P3 LINE L1 -633 5521 12 6269 185 39 20 chrX 107568073 107569347 -69404793 - L1MC1 LINE L1 -5103 1323 25 284 213 138 56 chrX 107569925 107570087 -69404053 - MLT1H LTR MaLR -302 168 3 208 390 89 0 chrX 107570322 107570445 -69403695 + MIR3 SINE MIR 64 197 -11 233 338 69 21 chrX 107570538 107570683 -69403457 + L3 LINE CR1 1067 1218 -359 336 349 17 23 chrX 107570830 107571002 -69403138 + L3 LINE CR1 1288 1458 -119 245 311 0 14 chrX 107571034 107571108 -69403032 + L2 LINE L2 3241 3313 0 552 279 113 34 chrX 107572024 107572289 -69401851 + L1MEc LINE L1 468 753 -6072 1831 141 50 19 chrX 107572359 107572678 -69401462 - Tigger2a DNA MER2_type -105 329 1 1976 241 71 30 chrX 107572713 107573318 -69400822 + L1MEc LINE L1 8 637 -5905 1325 223 54 8 chrX 107573325 107573697 -69400443 + L1MB5 LINE L1 3148 3536 -3108 3446 224 36 27 chrX 107573706 107574008 -69400132 + L1MB5 LINE L1 5590 5888 -784 1910 159 7 10 chrX 107574008 107574316 -69399824 + AluJb SINE Alu 1 307 -5 3446 224 36 27 chrX 107574316 107575089 -69399051 + L1MB5 LINE L1 5888 6672 0 642 132 15 66 chrX 107575091 107575227 -69398913 + L1M4 LINE L1 5593 5721 -463 188 400 38 0 chrX 107576120 107576200 -69397940 + L2 LINE L2 3231 3313 0 1828 146 10 19 chrX 107576248 107576557 -69397583 + AluJb SINE Alu 5 310 -2 195 290 200 40 chrX 107577406 107577506 -69396634 + L2 LINE L2 3143 3258 -14 304 345 37 28 chrX 107578084 107578280 -69395860 + MIR SINE MIR 2 196 -66 187 233 47 0 chrX 107578984 107579027 -69395113 + MIR3 SINE MIR 120 164 -44 1742 99 7 4 chrX 107579429 107579702 -69394438 + L1MA5A LINE L1 6024 6297 0 31 0 0 0 chrX 107579702 107579733 -69394407 + AT_rich Low_complexity Low_complexity 1 31 0 202 310 0 0 chrX 107579778 107579836 -69394304 + GA-rich Low_complexity Low_complexity 3 60 0 634 286 112 72 chrX 107579974 107580896 -69393244 + L1MEc LINE L1 795 1753 -4881 320 318 45 0 chrX 107580910 107581042 -69393098 + L1MEc LINE L1 1769 1906 -4738 243 279 109 7 chrX 107582183 107582330 -69391810 - L1M4 LINE L1 -3522 2624 2463 26 0 0 0 chrX 107582386 107582412 -69391728 + AT_rich Low_complexity Low_complexity 1 26 0 316 319 65 42 chrX 107582521 107582737 -69391403 + L1MC4a LINE L1 141 361 -5844 1223 287 78 39 chrX 107582823 107583201 -69390939 + L1MC4a LINE L1 461 876 -5329 5939 137 21 34 chrX 107583201 107584282 -69389858 + MER11C LTR ERVK 1 1067 -4 1223 287 78 39 chrX 107584282 107584541 -69389599 + L1MC4a LINE L1 876 1123 -5082 * 1592 311 24 9 chrX 107584535 107585376 -69388764 + L1MC4a LINE L1 2085 2895 -3320 201 108 0 0 chrX 107586266 107586303 -69387837 + (TTTTG)n Simple_repeat Simple_repeat 4 40 0 1943 152 0 17 chrX 107586310 107586607 -69387533 - AluJo SINE Alu -20 292 1 601 296 47 22 chrX 107586751 107587028 -69387112 + HAL1b LINE L1 206 489 -859 250 240 0 13 chrX 107587102 107587177 -69386963 + HAL1b LINE L1 719 792 -556 688 266 35 20 chrX 107587405 107587608 -69386532 + MIR SINE MIR 8 213 -49 21 0 0 0 chrX 107587644 107587665 -69386475 + AT_rich Low_complexity Low_complexity 1 21 0 330 266 0 38 chrX 107587841 107587920 -69386220 + MLT2E LTR ERVL 38 113 -515 5396 174 31 11 chrX 107588320 107589261 -69384879 + L1MA4A LINE L1 1 960 -5889 * 6182 144 29 7 chrX 107589258 107590690 -69383450 + L1MA4A LINE L1 5549 7005 0 28 0 0 0 chrX 107590690 107590718 -69383422 + AT_rich Low_complexity Low_complexity 1 28 0 333 314 107 31 chrX 107591837 107592155 -69381985 + L1MC4a LINE L1 3180 3521 -2694 639 249 26 79 chrX 107592190 107592495 -69381645 + L1MC4a LINE L1 5690 5978 -1899 957 208 8 54 chrX 107592719 107592959 -69381181 - AluJo SINE Alu -83 229 1 27 29 0 0 chrX 107593244 107593278 -69380862 + AT_rich Low_complexity Low_complexity 1 34 0 187 375 0 0 chrX 107593733 107593797 -69380343 + MIR SINE MIR 40 103 -105 1623 159 14 21 chrX 107594309 107594614 -69379526 + AluJo SINE Alu 14 312 0 1778 167 0 14 chrX 107594734 107595027 -69379113 - AluJb SINE Alu -23 289 1 3576 171 37 3 chrX 107595035 107595743 -69378397 - L1MB3 LINE L1 -2 6181 5450 945 301 4 0 chrX 107596526 107596752 -69377388 + MIR SINE MIR 2 228 -34 201 410 27 16 chrX 107596964 107597152 -69376988 + L2 LINE L2 2804 2993 -279 1127 233 144 5 chrX 107597611 107598014 -69376126 - L1ME3 LINE L1 -88 6074 5616 225 94 0 0 chrX 107598040 107598072 -69376068 + (CA)n Simple_repeat Simple_repeat 2 33 0 323 241 109 22 chrX 107598624 107598761 -69375379 + MER103 DNA DNA 18 166 0 3100 126 27 42 chrX 107599114 107599314 -69374826 - L1MA8 LINE L1 0 6291 6089 1844 95 112 62 chrX 107599314 107599671 -69374469 - THE1C LTR MaLR 0 375 1 3100 126 27 42 chrX 107599671 107600065 -69374075 - L1MA8 LINE L1 -202 6089 5706 1854 174 26 17 chrX 107600232 107600490 -69373650 + MER7A DNA MER2_type 1 262 -2776 1923 153 125 13 chrX 107600490 107600875 -69373265 - MSTA LTR MaLR 0 428 1 1854 174 26 17 chrX 107600875 107600960 -69373180 + MER7A DNA MER2_type 262 345 -1 661 324 75 54 chrX 107601440 107601948 -69372192 + L2 LINE L2 2610 3140 -173 2227 99 0 13 chrX 107601948 107602262 -69371878 + AluSg SINE Alu 1 310 0 661 324 75 54 chrX 107602262 107602439 -69371701 + L2 LINE L2 3140 3312 -1 31 44 0 0 chrX 107602900 107602945 -69371195 + AT_rich Low_complexity Low_complexity 1 45 0 210 240 0 0 chrX 107603348 107603398 -69370742 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 3751 230 70 26 chrX 107603399 107605412 -69368728 - L1MD2 LINE L1 -16 6343 4244 24 53 0 0 chrX 107606593 107606631 -69367509 + AT_rich Low_complexity Low_complexity 1 38 0 654 171 0 0 chrX 107607441 107607552 -69366588 + L1MC1 LINE L1 6223 6333 0 195 139 0 0 chrX 107609404 107609440 -69364700 + (GA)n Simple_repeat Simple_repeat 1 36 0 186 43 0 0 chrX 107609923 107609946 -69364194 + (A)n Simple_repeat Simple_repeat 1 23 0 308 335 136 7 chrX 107610226 107610381 -69363759 - MIR3 SINE MIR -5 203 29 456 263 106 61 chrX 107611111 107611309 -69362831 + MIR SINE MIR 18 224 -38 311 333 28 7 chrX 107611459 107611600 -69362540 + MIR SINE MIR 116 259 -3 558 291 44 37 chrX 107611899 107612329 -69361811 - L1MC5 LINE L1 -54 7907 7475 2573 45 0 3 chrX 107613266 107613575 -69360565 - AluY SINE Alu -3 308 1 1144 206 72 34 chrX 107613692 107613954 -69360186 + MER69 DNA AcHobo 1 272 -2254 * 1873 192 48 92 chrX 107613953 107614498 -69359642 + MER69 DNA AcHobo 1864 2377 -149 2250 95 0 0 chrX 107614498 107614792 -69359348 + AluSx SINE Alu 11 304 -8 1873 192 48 92 chrX 107614792 107614897 -69359243 + MER69 DNA AcHobo 2377 2485 -41 411 272 68 6 chrX 107615661 107615823 -69358317 + MER113 DNA MER1_type? 28 199 -322 1743 162 0 23 chrX 107615841 107616143 -69357997 - AluJb SINE Alu -17 295 1 491 286 38 0 chrX 107616143 107616276 -69357864 + MER113 DNA MER1_type? 244 381 -140 204 196 0 130 chrX 107616278 107616370 -69357770 - L2 LINE L2 0 3313 3234 871 158 0 0 chrX 107616486 107616619 -69357521 - FLAM_C SINE Alu 0 133 1 351 294 59 7 chrX 107616642 107616778 -69357362 + MER113 DNA MER1_type? 377 519 -2 457 257 44 9 chrX 107616792 107616905 -69357235 + MIR SINE MIR 30 146 -116 360 140 0 0 chrX 107616908 107616958 -69357182 + 5S rRNA rRNA 1 50 -71 228 354 0 0 chrX 107617000 107617079 -69357061 + MIR SINE MIR 164 242 -20 267 146 0 0 chrX 107617702 107617757 -69356383 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 5678 101 20 15 chrX 107617773 107618122 -69356018 - L1PB1 LINE L1 -16 6135 5789 309 51 0 0 chrX 107618122 107618161 -69355979 + (TA)n Simple_repeat Simple_repeat 1 39 0 5678 101 20 15 chrX 107618161 107618935 -69355205 - L1PB1 LINE L1 -362 5789 5000 377 319 28 21 chrX 107619483 107619627 -69354513 + MIR SINE MIR 58 202 -60 6378 94 30 4 chrX 107620173 107621100 -69353040 + L1MA1 LINE L1 5352 6302 0 294 122 0 0 chrX 107621110 107621159 -69352981 + L1MA3 LINE L1 6257 6305 0 488 276 36 59 chrX 107622146 107622367 -69351773 - MARNA DNA Mariner -334 252 37 32365 105 12 54 chrX 107622991 107629306 -69344834 + L1PA7 LINE L1 12 6047 -107 997 293 83 31 chrX 107629311 107629354 -69344786 - L1M4 LINE L1 -972 5174 5135 2139 99 3 3 chrX 107629354 107629648 -69344492 - AluSx SINE Alu -18 294 1 997 293 83 31 chrX 107629648 107630481 -69343659 - L1M4 LINE L1 -1011 5135 4252 973 276 80 7 chrX 107630485 107630949 -69343191 - L1MEc LINE L1 -4642 2480 1983 279 68 0 0 chrX 107630966 107631010 -69343130 + L1MA3 LINE L1 6262 6305 0 484 274 13 85 chrX 107631074 107631392 -69342748 - L1MEc LINE L1 -5164 1777 1483 914 202 69 0 chrX 107631417 107631590 -69342550 + MER58A DNA MER1_type 40 224 0 1090 227 113 87 chrX 107631593 107632240 -69341900 - L1MEc LINE L1 -4951 1472 809 23 0 0 0 chrX 107632610 107632633 -69341507 + AT_rich Low_complexity Low_complexity 1 23 0 321 26 0 0 chrX 107632830 107632868 -69341272 + (CA)n Simple_repeat Simple_repeat 2 39 0 36 0 0 0 chrX 107632968 107633004 -69341136 + AT_rich Low_complexity Low_complexity 1 36 0 191 323 40 40 chrX 107633783 107633907 -69340233 + MIR SINE MIR 136 259 -3 1604 186 0 7 chrX 107634386 107634665 -69339475 + AluJo SINE Alu 6 282 -30 222 37 0 0 chrX 107634668 107634695 -69339445 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 595 171 29 12 chrX 107634764 107634935 -69339205 + L1 LINE L1 5135 5310 -844 420 171 86 9 chrX 107634937 107635042 -69339098 + MER67A LTR ERV1 429 541 -2 607 244 133 22 chrX 107635043 107635268 -69338872 + MIR SINE MIR 13 262 0 477 287 90 74 chrX 107635553 107636054 -69338086 + L1ME4a LINE L1 5403 5911 -210 468 240 0 0 chrX 107636580 107636680 -69337460 - MIR SINE MIR -61 201 102 664 276 80 89 chrX 107636784 107637121 -69337019 + MER102b DNA MER1_type 1 334 -7 563 193 0 15 chrX 107637409 107637544 -69336596 + L1MA6 LINE L1 6168 6300 0 21 36 0 0 chrX 107637546 107637574 -69336566 + AT_rich Low_complexity Low_complexity 1 28 0 392 258 45 52 chrX 107637926 107638081 -69336059 + MIR SINE MIR 23 176 -86 311 341 41 6 chrX 107638186 107638356 -69335784 - MIR SINE MIR -1 261 86 4473 105 6 1 chrX 107638854 107639502 -69334638 + MER39B LTR ERV1 3 653 0 2665 139 35 31 chrX 107840649 107840684 -69133456 - L1MA8 LINE L1 -462 5829 5796 189 0 0 0 chrX 107840684 107840705 -69133435 + (TG)n Simple_repeat Simple_repeat 2 22 0 2665 139 35 31 chrX 107840705 107841053 -69133087 - L1MA8 LINE L1 -495 5796 5441 2163 120 0 3 chrX 107841053 107841352 -69132788 - AluSx SINE Alu -11 301 4 2665 139 35 31 chrX 107841352 107841449 -69132691 - L1MA8 LINE L1 -850 5441 5346 1902 187 26 6 chrX 107841506 107841853 -69132287 - MLT1A1 LTR MaLR -11 354 1 12203 196 26 32 chrX 107841854 107843386 -69130754 - L1MA8 LINE L1 -893 5253 3746 180 0 0 0 chrX 107843386 107843406 -69130734 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 12203 196 26 32 chrX 107843406 107844796 -69129344 - L1MA8 LINE L1 -2400 3746 2349 701 262 45 20 chrX 107844779 107845023 -69129117 - L1MD3 LINE L1 -19 7976 7727 * 653 283 38 0 chrX 107845030 107845320 -69128820 - L1M4 LINE L1 -3157 2989 2689 1338 258 36 50 chrX 107845341 107846006 -69128134 - L1M4 LINE L1 -3315 2831 2175 2909 102 58 4 chrX 107846006 107846457 -69127683 - L1PB1 LINE L1 -1 6150 5676 1338 258 36 50 chrX 107846457 107846490 -69127650 - L1M4 LINE L1 -3971 2175 2143 1417 213 47 18 chrX 107846592 107846935 -69127205 - L1MB7 LINE L1 -18 6166 5814 7368 226 53 47 chrX 107846947 107850188 -69123952 - L1MB8 LINE L1 -1 6988 3731 4000 145 22 8 chrX 107850194 107850912 -69123228 - L1MA8 LINE L1 0 6291 5564 2240 122 6 0 chrX 107850912 107851306 -69122834 + L1M2 LINE L1 5204 5599 -692 818 256 16 4 chrX 107851301 107851547 -69122593 - L1MB8 LINE L1 -3215 3742 3494 * 1148 106 6 11 chrX 107851547 107851727 -69122413 + L1PA13 LINE L1 5971 6149 -14 25 31 0 0 chrX 107851738 107851770 -69122370 + AT_rich Low_complexity Low_complexity 1 32 0 1280 145 192 0 chrX 107851781 107852015 -69122125 + Tigger3(Golem) DNA MER2_type 2760 3038 0 264 201 47 89 chrX 107852015 107852229 -69121911 + Zaphod DNA AcHobo 734 938 -3093 495 190 0 16 chrX 107852234 107852355 -69121785 + Zaphod DNA AcHobo 3586 3704 -327 1746 245 59 20 chrX 107852357 107853235 -69120905 - L1MB8 LINE L1 -3451 3506 2628 21 89 0 0 chrX 107853245 107853301 -69120839 + AT_rich Low_complexity Low_complexity 1 56 0 2311 154 51 12 chrX 107853497 107853925 -69120215 - MER65A LTR ERV1 0 445 1 865 269 74 51 chrX 107853988 107854284 -69119856 - L1MB8 LINE L1 -4543 2416 2128 1949 97 22 0 chrX 107854284 107854552 -69119588 + AluSg SINE Alu 1 274 -36 207 0 0 0 chrX 107854556 107854579 -69119561 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 865 269 74 51 chrX 107854579 107854749 -69119391 - L1MB8 LINE L1 -4833 2126 1934 1937 308 44 16 chrX 107854762 107855379 -69118761 - L1MB8 LINE L1 -6222 637 4 256 170 0 0 chrX 107855379 107855432 -69118708 - L1M4 LINE L1 -346 5828 5776 * 4342 239 55 25 chrX 107855428 107856608 -69117532 - L1M4 LINE L1 -5319 1223 8 917 307 64 51 chrX 107856618 107857691 -69116449 - L1ME LINE L1 -4233 2330 1121 488 268 71 75 chrX 107857719 107858215 -69115925 - L1ME LINE L1 -5207 1165 672 1297 286 26 45 chrX 107858330 107858981 -69115159 - L1M4 LINE L1 -2069 4077 3439 2594 241 82 39 chrX 107858998 107859511 -69114629 + L1ME2 LINE L1 4128 4617 -1547 2221 90 3 7 chrX 107859511 107859810 -69114330 - AluSx SINE Alu -14 298 1 2594 241 82 39 chrX 107859810 107861228 -69112912 + L1ME2 LINE L1 4617 6130 -34 314 294 48 8 chrX 107862062 107862188 -69111952 + L1MEd LINE L1 709 839 -5280 1844 160 7 0 chrX 107862312 107862606 -69111534 + AluJb SINE Alu 1 296 -16 885 221 0 11 chrX 107862688 107862869 -69111271 + AluJo SINE Alu 122 300 -12 482 271 81 62 chrX 107862933 107863402 -69110738 + L1MEd LINE L1 2093 2570 -3559 285 249 135 32 chrX 107863415 107863600 -69110540 + L1MEd LINE L1 2651 2854 -3275 * 1886 243 146 112 chrX 107863580 107865447 -69108693 - L1MC4a LINE L1 -606 7202 5273 258 338 50 18 chrX 107865659 107866103 -69108037 - L1MC4a LINE L1 -1127 5019 4562 1019 190 38 23 chrX 107866329 107866592 -69107548 - Charlie1a DNA MER1_type -6 1449 1183 854 150 7 0 chrX 107866594 107866734 -69107406 - L1PB4 LINE L1 0 6156 6016 1831 197 21 7 chrX 107866735 107867179 -69106961 + L1 LINE L1 4970 5419 -743 2431 208 16 54 chrX 107867179 107867927 -69106213 - Charlie1a DNA MER1_type -259 1196 404 351 0 0 0 chrX 107867927 107867966 -69106174 + (T)n Simple_repeat Simple_repeat 1 39 0 5258 18 2 0 chrX 107868281 107868902 -69105238 + L1P LINE L1 4160 4781 -1365 1823 251 7 2 chrX 107868902 107869312 -69104828 - Charlie1a DNA MER1_type -1038 417 6 353 253 51 0 chrX 107869632 107869711 -69104429 - MER58 DNA MER1_type -132 83 1 4674 258 89 53 chrX 107869726 107872407 -69101733 - L1MC/D LINE L1 -743 5403 2687 1335 123 59 4 chrX 107872507 107872760 -69101380 + AluSx SINE Alu 31 297 -15 2214 267 46 34 chrX 107872761 107874149 -69099991 - L1MEc LINE L1 -3147 3393 2034 6387 98 19 1 chrX 107874152 107875972 -69098168 - L1PA11 LINE L1 0 6174 4327 3236 194 18 7 chrX 107875973 107876586 -69097554 - L1PA12 LINE L1 -6959 622 3 597 220 8 0 chrX 107876580 107876712 -69097428 - L1MEc LINE L1 -4537 2003 1871 * 994 93 0 0 chrX 107877744 107877873 -69096267 - AluSq/x SINE Alu -183 129 1 618 204 41 14 chrX 107877874 107878021 -69096119 - Charlie1 DNA MER1_type -265 2496 2346 264 275 29 14 chrX 107878022 107878091 -69096049 - Charlie1 DNA MER1_type -2691 70 1 279 218 40 153 chrX 107878307 107878431 -69095709 + MIR SINE MIR 151 260 -2 21 36 0 0 chrX 107879165 107879193 -69094947 + AT_rich Low_complexity Low_complexity 1 28 0 1351 236 36 22 chrX 107879213 107879663 -69094477 - L1MC5 LINE L1 -54 7907 7452 351 213 106 0 chrX 107881177 107881271 -69092869 - L2 LINE L2 0 3313 3210 285 182 0 0 chrX 107882629 107882684 -69091456 + CT-rich Low_complexity Low_complexity 3 57 0 25 0 0 0 chrX 107884994 107885019 -69089121 + AT_rich Low_complexity Low_complexity 1 25 0 282 295 41 66 chrX 107885366 107885488 -69088652 + L2 LINE L2 3138 3256 -16 1811 147 27 10 chrX 107885505 107885798 -69088342 + AluJo SINE Alu 5 302 -10 2042 149 9 32 chrX 107886537 107886880 -69087260 - MER1B DNA MER1_type 0 337 3 520 252 26 13 chrX 107887007 107887158 -69086982 - LTR16A LTR ERVL -6 444 292 586 260 109 53 chrX 107887369 107887442 -69086698 - LTR16A LTR ERVL -164 286 219 1894 136 54 41 chrX 107887442 107887810 -69086330 - THE1C LTR MaLR -2 373 1 586 260 109 53 chrX 107887810 107888001 -69086139 - LTR16A LTR ERVL -231 219 7 2553 223 79 33 chrX 107888065 107888822 -69085318 - MER21B LTR ERV1 -60 803 12 295 320 20 0 chrX 107889010 107889160 -69084980 - MLT1I LTR MaLR -13 396 244 2647 155 180 15 chrX 107889558 107889789 -69084351 + MER39 LTR ERV1 1 193 -514 1838 191 9 78 chrX 107889789 107890214 -69083926 - MSTD LTR MaLR 0 396 1 2647 155 180 15 chrX 107890214 107890589 -69083551 + MER39 LTR ERV1 193 707 0 519 201 32 39 chrX 107890853 107891007 -69083133 + L1MB8 LINE L1 5977 6129 -49 1805 188 32 30 chrX 107891058 107891616 -69082524 - MLT2A2 LTR ERVL 0 554 1 542 118 0 0 chrX 107891619 107891712 -69082428 - MLT2A2 LTR ERVL -360 93 1 1381 99 23 5 chrX 107891965 107892186 -69081954 - THE1C LTR MaLR -60 315 91 23 68 0 0 chrX 107892408 107892452 -69081688 + AT_rich Low_complexity Low_complexity 1 44 0 2692 133 2 38 chrX 107894095 107894539 -69079601 + MSTA LTR MaLR 1 428 0 3159 155 9 55 chrX 107895703 107895787 -69078353 + MER6A DNA MER2_type 1 87 -778 2036 148 50 6 chrX 107895787 107896146 -69077994 - THE1C LTR MaLR 0 375 1 3159 155 9 55 chrX 107896146 107896491 -69077649 + MER6A DNA MER2_type 87 394 -471 1847 170 7 0 chrX 107896491 107896779 -69077361 - AluJb SINE Alu -22 290 1 3159 155 9 55 chrX 107896779 107896981 -69077159 + MER6A DNA MER2_type 394 604 -1 21 0 0 0 chrX 107896991 107897012 -69077128 + AT_rich Low_complexity Low_complexity 1 21 0 1039 298 50 52 chrX 107897016 107897439 -69076701 - L2 LINE L2 -17 3296 2875 825 277 82 60 chrX 107898042 107898590 -69075550 + L1MEd LINE L1 655 1214 -4905 474 261 20 0 chrX 107898769 107898922 -69075218 + L1M4 LINE L1 4879 5034 -1112 1158 200 49 42 chrX 107898927 107899352 -69074788 + MER69 DNA AcHobo 2099 2526 0 1425 282 59 23 chrX 107899487 107900228 -69073912 - MER4D LTR ERV1 -5 898 1 4031 131 32 17 chrX 107900608 107901302 -69072838 + MER50 LTR ERV1 1 704 -30 229 159 68 45 chrX 107901310 107901398 -69072742 + L2 LINE L2 3095 3184 -129 521 227 31 31 chrX 107901464 107901592 -69072548 + L2 LINE L2 3186 3313 0 3641 105 18 25 chrX 107902008 107902517 -69071623 - LTR49 LTR ERV1 0 595 89 1843 127 59 59 chrX 107902517 107902888 -69071252 + THE1C LTR MaLR 3 373 -2 3641 105 18 25 chrX 107902888 107902977 -69071163 - LTR49 LTR ERV1 -506 89 1 2880 140 66 38 chrX 107903189 107903776 -69070364 + LTR29 LTR ERV1 19 622 0 1761 104 21 131 chrX 107903802 107904068 -69070072 + LTR62 LTR ERVK 376 589 -130 1963 153 0 31 chrX 107904068 107904388 -69069752 + AluSx SINE Alu 3 312 0 1761 104 21 131 chrX 107904388 107904504 -69069636 + LTR62 LTR ERVK 589 716 -3 4236 139 33 71 chrX 107905140 107905609 -69068531 + ERVL-B1 LTR ERVL 4673 5091 -673 1803 184 75 21 chrX 107905609 107905985 -69068155 - MSTD LTR MaLR 0 396 1 4236 139 33 71 chrX 107905985 107906445 -69067695 + ERVL-B1 LTR ERVL 5091 5567 -197 1902 143 165 0 chrX 107906445 107906809 -69067331 - MSTA LTR MaLR 0 428 5 313 238 0 12 chrX 107906823 107906903 -69067237 - MSTA-int LTR MaLR -10 1570 1492 6508 182 21 2 chrX 107907180 107908360 -69065780 - MSTA-int LTR MaLR -10 1641 439 2448 164 9 0 chrX 107909870 107910308 -69063832 - MSTA-int LTR MaLR -1209 442 1 1924 161 130 3 chrX 107910310 107910688 -69063452 - MSTA LTR MaLR -2 426 1 1189 136 0 20 chrX 107910689 107910887 -69063253 + ERVL-B1 LTR ERVL 5564 5757 -7 1614 218 119 51 chrX 107910887 107911332 -69062808 + MLT2B1 LTR ERVL 1 483 -37 285 29 0 0 chrX 107911332 107911366 -69062774 + (TG)n Simple_repeat Simple_repeat 1 34 0 1614 218 119 51 chrX 107911366 107911407 -69062733 + MLT2B1 LTR ERVL 483 520 0 838 151 36 36 chrX 107911409 107911575 -69062565 + MLT1D LTR MaLR 338 503 -2 306 336 0 9 chrX 107911619 107911732 -69062408 - L1MEc LINE L1 -4621 2100 1989 674 266 60 32 chrX 107911737 107912139 -69062001 - L1MEc LINE L1 -4825 1715 1303 29506 109 18 53 chrX 107912302 107913837 -69060303 - L1PA7 LINE L1 0 6154 4568 2375 91 3 0 chrX 107913837 107914146 -69059994 - AluY SINE Alu -1 310 1 29506 109 18 53 chrX 107914146 107918984 -69055156 - L1PA7 LINE L1 -1586 4568 12 1684 207 84 22 chrX 107919447 107919962 -69054178 - MER39 LTR ERV1 0 707 5 3700 84 41 9 chrX 107920969 107921506 -69052634 + MER41A LTR ERV1 1 554 0 1111 139 74 25 chrX 107921619 107921821 -69052319 - THE1B LTR MaLR -152 212 1 11666 91 10 3 chrX 107921821 107923389 -69050751 - THE1B-int LTR MaLR 0 1580 1 2033 136 51 28 chrX 107923391 107923745 -69050395 - THE1B LTR MaLR -2 362 1 548 199 0 38 chrX 107923773 107923904 -69050236 - MER31A LTR ERV1 -1 484 359 1823 220 81 6 chrX 107924093 107924677 -69049463 + L1ME1 LINE L1 5213 5845 -321 259 129 16 65 chrX 107924700 107924762 -69049378 - L1ME2 LINE L1 -240 5924 5866 686 275 164 9 chrX 107924766 107925154 -69048986 - L2 LINE L2 -478 2836 2343 234 171 0 68 chrX 107925157 107925245 -69048895 + (CATATA)n Simple_repeat Simple_repeat 1 82 0 351 285 6 15 chrX 107925269 107925451 -69048689 - L1MC/D LINE L1 -297 5824 5712 855 272 82 50 chrX 107925623 107926086 -69048054 - LTR33A LTR ERVL -14 509 32 206 154 0 26 chrX 107926373 107926412 -69047728 + GA-rich Low_complexity Low_complexity 3 40 0 6041 199 27 2 chrX 107927192 107929000 -69045140 + L1M1 LINE L1 13 2542 -5023 2252 199 61 28 chrX 107928995 107929200 -69044940 - L1M4 LINE L1 -4916 1626 1429 * 3752 155 9 11 chrX 107929200 107929844 -69044296 + MER73 LTR ERVL 1 643 -1 2252 199 61 28 chrX 107929844 107930077 -69044063 - L1M4 LINE L1 -5113 1429 1205 400 77 0 0 chrX 107930077 107930129 -69044011 + AluY SINE Alu 28 79 -231 2115 67 3 18 chrX 107930080 107930363 -69043777 + AluY SINE Alu 31 309 -2 2252 199 61 28 chrX 107930129 107930696 -69043444 - L1M4 LINE L1 -5337 1205 817 2068 244 54 17 chrX 107930732 107931505 -69042635 + L1MEc LINE L1 2168 2946 -3269 1709 176 3 10 chrX 107931505 107931800 -69042340 + AluJb SINE Alu 1 293 -19 2109 121 0 25 chrX 107932556 107932871 -69041269 - AluSg1 SINE Alu -2 307 1 1451 209 11 15 chrX 107933109 107933377 -69040763 + AluJo SINE Alu 12 278 -34 23 0 0 0 chrX 107933382 107933405 -69040735 + AT_rich Low_complexity Low_complexity 1 23 0 288 273 119 35 chrX 107934287 107934430 -69039710 + L2 LINE L2 2188 2342 -972 714 280 86 0 chrX 107934607 107934839 -69039301 - MIR SINE MIR -10 252 1 457 364 0 0 chrX 107934877 107935031 -69039109 + L2 LINE L2 3117 3270 -2 2221 62 0 55 chrX 107936184 107936491 -69037649 - AluY SINE Alu -21 290 1 258 32 0 0 chrX 107936501 107936532 -69037608 + (T)n Simple_repeat Simple_repeat 1 31 0 771 294 32 0 chrX 107937268 107937486 -69036654 - MIR SINE MIR -31 231 7 376 325 7 53 chrX 107937919 107938070 -69036070 + MER5A DNA MER1_type 16 159 -30 205 333 23 23 chrX 107938413 107938500 -69035640 - MER5A DNA MER1_type -102 87 1 618 327 5 5 chrX 107938621 107938835 -69035305 - MIR SINE MIR 0 262 49 1790 147 9 22 chrX 107939096 107939444 -69034696 - MER4A LTR ERV1 0 664 263 549 137 21 11 chrX 107939443 107939538 -69034602 - MER4A LTR ERV1 -563 101 6 * 606 211 0 0 chrX 107939602 107939716 -69034424 + FLAM_A SINE Alu 1 114 -19 207 0 0 0 chrX 107939716 107939739 -69034401 + (CA)n Simple_repeat Simple_repeat 1 23 0 361 311 62 11 chrX 107940470 107940647 -69033493 + MIR SINE MIR 65 250 -12 368 273 106 40 chrX 107940771 107940969 -69033171 + MARNA DNA Mariner 75 285 -301 1030 125 0 24 chrX 107941248 107941416 -69032724 + AluSg/x SINE Alu 147 310 0 333 392 118 24 chrX 107941496 107942276 -69031864 - L2 LINE L2 -374 2940 2088 186 398 47 31 chrX 107942302 107942430 -69031710 + L2 LINE L2 2609 2738 -576 521 256 94 68 chrX 107942510 107942924 -69031216 + L1ME1 LINE L1 1526 1950 -4590 713 131 0 62 chrX 107942939 107943069 -69031071 - LTR53 LTR ERVL -396 123 2 1767 122 0 66 chrX 107943153 107943473 -69030667 + AluY SINE Alu 1 299 -12 977 160 0 7 chrX 107943490 107943640 -69030500 + AluJb SINE Alu 147 295 -17 2886 260 47 21 chrX 107943647 107945397 -69028743 + L1ME1 LINE L1 4766 6555 -5 4431 280 65 23 chrX 107945624 107946944 -69027196 + L1M4 LINE L1 42 1417 -5125 * 4729 191 37 31 chrX 107946939 107948404 -69025736 + L1MB7 LINE L1 4698 6171 -13 521 309 209 11 chrX 107948481 107949191 -69024949 + L1M4 LINE L1 3840 4689 -1955 284 322 22 0 chrX 107949268 107949358 -69024782 + MLT1J1 LTR MaLR 71 162 -284 454 314 129 5 chrX 107949385 107949595 -69024545 + MLT1J2 LTR MaLR 215 450 0 1654 261 67 50 chrX 107949601 107950492 -69023648 + L1M4 LINE L1 4711 5616 -1028 194 296 0 19 chrX 107950565 107950619 -69023521 + L2 LINE L2 3169 3221 -92 447 311 0 85 chrX 107951110 107951287 -69022853 - L3 LINE CR1 -13 1564 1403 7761 18 1 1 chrX 107951678 107952661 -69021479 + L1PA3 LINE L1 5173 6155 0 211 182 0 23 chrX 107952729 107952773 -69021367 - MIR3 SINE MIR -7 201 159 258 324 9 36 chrX 107953072 107953183 -69020957 - MIR SINE MIR -142 120 13 305 323 31 56 chrX 107953331 107953526 -69020614 - L2 LINE L2 -439 2875 2686 2549 71 0 0 chrX 107953885 107954196 -69019944 + AluY SINE Alu 1 311 0 462 229 171 7 chrX 107954583 107954723 -69019417 - MIR SINE MIR -21 241 79 549 289 52 39 chrX 107954724 107954956 -69019184 - MIR SINE MIR -15 247 13 2571 115 3 3 chrX 107955058 107955422 -69018718 - THE1B LTR MaLR 0 364 1 2118 117 3 0 chrX 107955567 107955899 -69018241 - AluSp SINE Alu 0 333 1 554 278 8 0 chrX 107956464 107956597 -69017543 + MER94 DNA DNA 1 134 0 2334 95 0 0 chrX 107957063 107957358 -69016782 - AluSx SINE Alu -17 295 1 260 277 84 17 chrX 107957518 107957637 -69016503 - LTR33A LTR ERVL -22 501 375 * 756 233 330 6 chrX 107957623 107957975 -69016165 - LTR50 LTR ERVL -326 469 4 1389 116 28 0 chrX 107959260 107959475 -69014665 + L1PA16 LINE L1 5937 6157 -9 628 174 0 33 chrX 107959871 107959992 -69014148 + L1PA8A LINE L1 6013 6129 -2 1286 134 92 54 chrX 107959994 107960255 -69013885 + THE1C LTR MaLR 55 325 -50 243 304 148 9 chrX 107960262 107960377 -69013763 + MIR SINE MIR 20 150 -112 331 250 71 0 chrX 107960766 107960878 -69013262 + MIR SINE MIR 133 252 -10 3222 182 34 14 chrX 107960971 107961591 -69012549 - MER73 LTR ERVL 0 644 13 274 278 102 0 chrX 107961832 107961940 -69012200 - MIR SINE MIR -6 256 138 332 163 109 0 chrX 107963328 107963420 -69010720 - MER103 DNA DNA -10 156 55 239 121 0 69 chrX 107963420 107963478 -69010662 + (TAAAAA)n Simple_repeat Simple_repeat 1 54 0 5487 146 40 14 chrX 107963850 107965296 -69008844 + L1PB2 LINE L1 4669 6151 0 1093 144 28 0 chrX 107965318 107965499 -69008641 + L1PA11 LINE L1 5989 6174 0 1394 200 19 4 chrX 107965763 107966033 -69008107 + MLT1A1 LTR MaLR 92 365 0 263 184 0 92 chrX 107966204 107966280 -69007860 - L1ME1 LINE L1 -177 5989 5921 3834 213 49 9 chrX 107966289 107967970 -69006170 - L1MA9 LINE L1 -33 6279 4533 2749 196 120 18 chrX 107967995 107968703 -69005437 - L1MA5A LINE L1 -2 7714 6935 * 3217 229 36 69 chrX 107968700 107970381 -69003759 - L1MA5A LINE L1 -3181 4384 2758 2321 224 61 46 chrX 107970384 107971183 -69002957 - L1ME1 LINE L1 -106 6060 5236 2194 122 0 3 chrX 107971183 107971486 -69002654 - AluSx SINE Alu -10 302 1 2321 224 61 46 chrX 107971486 107971717 -69002423 - L1ME1 LINE L1 -930 5236 5010 7164 120 21 5 chrX 107971747 107973630 -69000510 - L1MA1 LINE L1 -1 6301 4389 24 32 0 0 chrX 107973643 107973674 -69000466 + AT_rich Low_complexity Low_complexity 1 31 0 217 235 39 0 chrX 107973674 107973725 -69000415 + CT-rich Low_complexity Low_complexity 4 56 0 422 330 42 39 chrX 107973862 107974219 -68999921 - L1MC/D LINE L1 -297 5824 5469 4731 44 0 0 chrX 107974214 107974784 -68999356 - L1PA6 LINE L1 -3 6151 5582 8487 195 29 2 chrX 107974788 107975466 -68998674 - L1 LINE L1 -1748 4398 3740 1940 147 21 0 chrX 107975466 107975751 -68998389 - AluSq SINE Alu -22 291 1 8487 195 29 2 chrX 107975751 107976329 -68997811 - L1 LINE L1 -2406 3740 3179 180 0 0 0 chrX 107976329 107976349 -68997791 + (GTTTG)n Simple_repeat Simple_repeat 2 21 0 8487 195 29 2 chrX 107976349 107976929 -68997211 - L1 LINE L1 -2967 3179 2511 3271 235 72 19 chrX 107976970 107977374 -68996766 - L1M4 LINE L1 -2443 3703 3322 1030 92 0 37 chrX 107977374 107977538 -68996602 - L1PA14 LINE L1 0 6161 6004 3271 235 72 19 chrX 107977538 107978316 -68995824 - L1M4 LINE L1 -2824 3322 2459 196 364 110 0 chrX 107978565 107978683 -68995457 + MIR SINE MIR 3 133 -129 4397 221 39 18 chrX 107979044 107980252 -68993888 + L1MD2 LINE L1 4964 6173 -186 2388 169 22 12 chrX 107980252 107980665 -68993475 - MER47B DNA MER2_type -1 417 1 4397 221 39 18 chrX 107980665 107980834 -68993306 + L1MD2 LINE L1 6173 6337 -22 305 103 17 17 chrX 107980846 107980904 -68993236 - MLT2A1 LTR ERVL 0 444 387 278 215 0 13 chrX 107980908 107980987 -68993153 + (TA)n Simple_repeat Simple_repeat 2 79 0 2442 134 79 1 chrX 107980988 107981392 -68992748 - MLT2A2 LTR ERVL -35 480 6 8089 85 4 0 chrX 107981401 107982461 -68991679 - HERVL-A2 LTR ERVL -13 5641 4578 * 15247 90 9 18 chrX 107982457 107984580 -68989560 - HERVL-A2 LTR ERVL -3551 2103 1 3052 115 11 11 chrX 107984580 107985032 -68989108 - MLT2A2 LTR ERVL 0 453 2 233 281 18 0 chrX 107985335 107985392 -68988748 + L1M2 LINE L1 10 67 -6782 375 346 86 60 chrX 107985481 107985865 -68988275 + L1M2 LINE L1 161 554 -6295 5804 89 41 30 chrX 107986007 107986150 -68987990 + MER41B-int LTR ERV1 5062 5202 -744 1930 159 3 0 chrX 107986150 107986440 -68987700 + AluSq SINE Alu 1 291 -22 5804 89 41 30 chrX 107986440 107987168 -68986972 + MER41B-int LTR ERV1 5202 5943 -3 2029 121 3 0 chrX 107987170 107987467 -68986673 + MER41B LTR ERV1 1 298 -337 1650 132 0 23 chrX 107987467 107987733 -68986407 - MER41-int LTR ERV1 -1448 4498 4239 1365 115 138 27 chrX 107987730 107987990 -68986150 - MER41-int LTR ERV1 -1817 4129 3841 * 283 280 140 80 chrX 107987991 107988405 -68985735 - L1PBb LINE L1 -5393 811 373 1695 155 7 7 chrX 107988465 107988742 -68985398 - MER50 LTR ERV1 -23 711 435 1614 177 26 6 chrX 107988734 107989045 -68985095 - MER50 LTR ERV1 -417 317 1 * 310 221 310 0 chrX 107989934 107990047 -68984093 - MER5A DNA MER1_type 0 189 42 2308 91 0 7 chrX 107990491 107990788 -68983352 - AluSq SINE Alu -18 295 1 653 131 9 9 chrX 107991416 107991523 -68982617 + FLAM_C SINE Alu 1 107 -36 285 130 0 0 chrX 107991542 107991588 -68982552 + (T)n Simple_repeat Simple_repeat 1 46 0 931 168 0 0 chrX 107991705 107991848 -68982292 + AluJb SINE Alu 145 287 -25 188 287 74 37 chrX 107991973 107992081 -68982059 + L2 LINE L2 3114 3225 -47 2028 149 0 0 chrX 107993637 107993932 -68980208 + AluSx SINE Alu 1 295 -17 526 231 121 66 chrX 107994206 107994388 -68979752 + L2 LINE L2 3117 3308 -5 183 231 123 123 chrX 107996068 107996198 -68977942 + MIR3 SINE MIR 30 159 -49 214 231 0 0 chrX 107996544 107996583 -68977557 + L3 LINE CR1 1526 1564 -13 716 235 74 41 chrX 107997240 107997483 -68976657 - MIR SINE MIR 0 262 12 240 212 0 0 chrX 107997750 107997816 -68976324 + CT-rich Low_complexity Low_complexity 1 66 0 547 248 0 47 chrX 107998167 107998296 -68975844 - L2 LINE L2 -6 3307 3185 380 227 127 9 chrX 107999097 107999207 -68974933 + L2 LINE L2 3190 3312 -1 386 300 92 8 chrX 107999218 107999338 -68974802 - MIR3 SINE MIR -35 173 44 1971 123 0 0 chrX 107999719 107999995 -68974145 + AluSx SINE Alu 1 276 -36 186 71 0 0 chrX 108000001 108000029 -68974111 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 350 311 21 84 chrX 108000275 108000513 -68973627 - L2 LINE L2 -536 2778 2556 271 343 69 20 chrX 108002238 108002340 -68971800 + L2 LINE L2 3158 3264 -8 240 86 0 0 chrX 108002676 108002711 -68971429 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2153 151 5 5 chrX 108003130 108003500 -68970640 + L1MB7 LINE L1 5741 6110 -74 27 29 0 0 chrX 108003843 108003877 -68970263 + AT_rich Low_complexity Low_complexity 1 34 0 221 86 75 43 chrX 108003877 108003970 -68970170 + (TATAA)n Simple_repeat Simple_repeat 1 96 0 28 29 0 0 chrX 108003972 108004007 -68970133 + AT_rich Low_complexity Low_complexity 1 35 0 180 111 0 0 chrX 108004975 108005002 -68969138 + (A)n Simple_repeat Simple_repeat 1 27 0 2082 101 14 0 chrX 108005020 108005335 -68968805 + AluSx SINE Alu 1 319 0 22 0 0 0 chrX 108005515 108005537 -68968603 + AT_rich Low_complexity Low_complexity 1 22 0 408 207 0 0 chrX 108005570 108005652 -68968488 + L2 LINE L2 2394 2475 -839 214 328 26 52 chrX 108005696 108005812 -68968328 + L2 LINE L2 2626 2738 -576 475 311 88 10 chrX 108006188 108006381 -68967759 - MIR3 SINE MIR 0 208 1 467 278 16 8 chrX 108007315 108007441 -68966699 - MIR3 SINE MIR -46 162 36 228 239 31 138 chrX 108007608 108007738 -68966402 - L2 LINE L2 -8 3305 3190 * 557 284 8 117 chrX 108007735 108007871 -68966269 - MIR SINE MIR -21 241 146 2314 105 11 3 chrX 108007871 108008232 -68965908 - L1MA6 LINE L1 0 6300 5937 557 284 8 117 chrX 108008232 108008359 -68965781 - MIR SINE MIR -116 146 7 309 257 48 29 chrX 108008995 108009100 -68965040 + MIR SINE MIR 114 220 -42 238 300 0 0 chrX 108009409 108009469 -68964671 - MIR SINE MIR -68 140 81 372 43 0 0 chrX 108010051 108010097 -68964043 + (TAA)n Simple_repeat Simple_repeat 2 47 0 432 332 151 0 chrX 108010107 108010306 -68963834 - MIR SINE MIR -14 248 20 906 117 0 22 chrX 108011049 108011186 -68962954 - AluJo SINE Alu -178 134 1 2007 249 256 13 chrX 108011955 108012407 -68961733 - L2 LINE L2 -30 3283 2942 4429 139 67 6 chrX 108012407 108013186 -68960954 + LTR1B LTR ERV1 1 826 0 2007 249 256 13 chrX 108013186 108013938 -68960202 - L2 LINE L2 -371 2942 1784 2789 190 91 32 chrX 108013951 108014723 -68959417 - MER21B LTR ERV1 -20 911 1 484 91 0 91 chrX 108014815 108014827 -68959313 - MER21B-int LTR ERV1 -55 4136 4125 3858 127 10 5 chrX 108014827 108015425 -68958715 + MER7C DNA MER2_type 1 601 -1 484 91 0 91 chrX 108015425 108015500 -68958640 - MER21B-int LTR ERV1 -66 4125 4057 2093 112 0 7 chrX 108015821 108016107 -68958033 + AluSg SINE Alu 1 284 -26 2680 36 0 0 chrX 108016384 108016688 -68957452 + AluSx SINE Alu 1 304 -8 184 149 43 0 chrX 108016971 108017018 -68957122 + CT-rich Low_complexity Low_complexity 2 50 0 981 287 70 41 chrX 108017752 108018194 -68955946 + MLT1J LTR MaLR 1 455 -56 2134 113 24 0 chrX 108018272 108018565 -68955575 + AluSx SINE Alu 1 300 -12 1618 142 112 0 chrX 108018894 108019162 -68954978 + AluSx SINE Alu 1 298 -14 579 188 0 0 chrX 108019664 108019765 -68954375 + U6 snRNA snRNA 1 101 -6 1504 348 109 19 chrX 108020122 108021236 -68952904 + L2 LINE L2 1053 2309 -1005 2274 157 46 14 chrX 108021236 108021649 -68952491 + MSTB LTR MaLR 1 426 0 1504 348 109 19 chrX 108021649 108021878 -68952262 + L2 LINE L2 2309 2516 -798 2161 108 14 0 chrX 108022156 108022443 -68951697 - AluSx SINE Alu -21 291 1 470 311 102 35 chrX 108022500 108022815 -68951325 + L2 LINE L2 2437 2772 -542 682 313 23 8 chrX 108022819 108023075 -68951065 - MIR SINE MIR -2 260 1 1448 145 118 15 chrX 108023993 108024325 -68949815 + MER47A DNA MER2_type 1 366 0 284 371 34 17 chrX 108024844 108025022 -68949118 - L2 LINE L2 -640 2674 2494 254 322 186 66 chrX 108025102 108025817 -68948323 - L2 LINE L2 -1229 2085 1285 384 336 39 74 chrX 108025857 108026086 -68948054 + L2 LINE L2 2986 3206 -66 547 217 33 8 chrX 108026177 108026297 -68947843 + L2 LINE L2 3190 3312 -1 419 320 20 7 chrX 108026437 108026587 -68947553 - MIR SINE MIR -109 153 2 3111 173 59 56 chrX 108026997 108027479 -68946661 + LTR1 LTR ERV1 1 489 -296 1250 52 0 0 chrX 108027479 108027634 -68946506 + L1PA4 LINE L1 5993 6147 -8 3111 173 59 56 chrX 108027634 108027925 -68946215 + LTR1 LTR ERV1 489 777 -8 382 265 95 20 chrX 108027933 108028080 -68946060 + MIR SINE MIR 101 258 -4 324 0 0 0 chrX 108028223 108028259 -68945881 + (A)n Simple_repeat Simple_repeat 1 36 0 411 313 23 16 chrX 108028426 108028554 -68945586 - MIR SINE MIR -64 144 16 183 80 0 0 chrX 108028554 108028579 -68945561 + (TAA)n Simple_repeat Simple_repeat 1 25 0 191 307 13 27 chrX 108028683 108028758 -68945382 + MIR3 SINE MIR 4 77 -131 596 196 0 18 chrX 108028796 108028908 -68945232 + FLAM_A SINE Alu 12 121 -21 403 284 0 10 chrX 108030150 108030252 -68943888 + MIR SINE MIR 28 128 -80 240 333 12 24 chrX 108030261 108030345 -68943795 - L3 LINE CR1 -23 1554 1472 221 319 14 0 chrX 108030342 108030414 -68943726 + MIR3 SINE MIR 121 193 -15 * 180 0 0 0 chrX 108032627 108032647 -68941493 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1402 218 186 62 chrX 108033618 108034278 -68939862 + MER21B LTR ERV1 11 808 -123 1448 214 66 49 chrX 108034340 108034904 -68939236 + LTR24B LTR ERV1 1 569 -7 782 279 61 45 chrX 108035007 108035384 -68938756 + MLT1J LTR MaLR 5 387 -124 307 329 99 50 chrX 108035670 108035831 -68938309 + L2 LINE L2 3097 3265 -7 704 266 46 32 chrX 108035951 108036169 -68937971 - MIR SINE MIR -28 234 14 306 250 22 22 chrX 108036594 108036686 -68937454 - L1MC5 LINE L1 -38 7923 7832 489 338 32 0 chrX 108036762 108036919 -68937221 - MIR3 SINE MIR -3 205 44 2357 99 0 13 chrX 108037695 108038008 -68936132 - AluSx SINE Alu -3 309 1 2764 272 72 12 chrX 108038369 108039430 -68934710 - L2 LINE L2 -1 3312 2178 709 180 0 0 chrX 108039965 108040087 -68934053 + FLAM_A SINE Alu 1 122 -11 1203 222 9 0 chrX 108040452 108040682 -68933458 + MIR SINE MIR 7 238 -24 2849 27 6 0 chrX 108041232 108041567 -68932573 + L1PA4 LINE L1 5818 6154 -1 934 334 98 32 chrX 108042239 108042891 -68931249 + L2 LINE L2 2261 2955 -359 236 324 0 0 chrX 108042900 108042968 -68931172 - L2 LINE L2 -653 2661 2594 290 352 87 46 chrX 108042974 108043170 -68930970 + L2 LINE L2 2995 3198 -74 1834 157 30 40 chrX 108044097 108044467 -68929673 + MER47A DNA MER2_type 1 366 0 646 279 103 27 chrX 108045119 108045420 -68928720 - L3b LINE CR1 -86 1497 1174 1675 196 7 0 chrX 108046406 108046692 -68927448 - AluJo SINE Alu -24 288 1 806 162 16 11 chrX 108046703 108046888 -68927252 - L1MA8 LINE L1 -5 6286 6101 12307 135 32 8 chrX 108046888 108048994 -68925146 + Tigger1 DNA MER2_type 3 2159 -259 238 231 0 0 chrX 108048994 108049046 -68925094 + LTR30 LTR ERV1 1 52 -670 1057 75 0 160 chrX 108049046 108049259 -68924881 + LTR12 LTR ERV1 53 231 -483 1738 153 83 22 chrX 108049259 108049828 -68924312 + pTR5 LTR ERV1 57 1941 -497 1537 157 118 73 chrX 108049828 108050352 -68923788 + pTR5 LTR ERV1 57 1922 -516 1628 215 0 3 chrX 108050545 108050857 -68923283 + AluJo SINE Alu 1 311 -1 244 237 21 31 chrX 108050873 108050970 -68923170 - Charlie7 DNA MER1_type -4 2608 2513 316 206 62 0 chrX 108050991 108051088 -68923052 - Charlie7 DNA MER1_type -1927 685 583 264 152 0 0 chrX 108051088 108051134 -68923006 - L1PA10 LINE L1 -2 6166 6121 373 110 24 0 chrX 108052230 108052312 -68921828 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 1901 171 3 7 chrX 108052312 108052599 -68921541 - AluJb SINE Alu -26 286 1 553 227 26 26 chrX 108052855 108053009 -68921131 + MIR SINE MIR 32 185 -77 307 211 0 42 chrX 108053154 108053225 -68920915 - L2 LINE L2 -2 3311 3244 652 239 20 21 chrX 108053357 108053617 -68920523 - MLT1J2 LTR MaLR -164 282 21 324 0 0 0 chrX 108054318 108054354 -68919786 + (TG)n Simple_repeat Simple_repeat 2 37 0 463 351 108 30 chrX 108057501 108058003 -68916137 + L2 LINE L2 2324 2864 -450 661 290 22 33 chrX 108058430 108058706 -68915434 + L1MC4 LINE L1 7308 7580 -462 759 364 116 18 chrX 108058980 108059772 -68914368 + L2 LINE L2 209 1078 -2236 252 255 96 65 chrX 108059787 108060281 -68913859 - L1M4 LINE L1 -3475 3169 2642 2772 163 42 9 chrX 108060332 108060879 -68913261 - L1MB7 LINE L1 -1 6183 5619 1286 164 11 19 chrX 108060911 108061179 -68912961 - LTR13 LTR ERVK -741 266 1 4573 235 83 19 chrX 108061304 108063228 -68910912 - L1M4 LINE L1 -4566 2080 48 1403 184 81 26 chrX 108063239 108063586 -68910554 - MER51A LTR ERV1 -12 622 257 233 111 0 0 chrX 108063584 108063620 -68910520 - MER51A LTR ERV1 -598 36 1 * 322 180 49 0 chrX 108063620 108063681 -68910459 - L1M4 LINE L1 -6474 68 5 2720 98 0 8 chrX 108063880 108064247 -68909893 + THE1B LTR MaLR 1 364 0 10862 98 18 29 chrX 108064247 108065846 -68908294 + THE1B-int LTR MaLR 1 1580 0 2636 107 0 6 chrX 108065846 108066212 -68907928 + THE1B LTR MaLR 1 364 0 584 308 173 10 chrX 108066652 108067561 -68906579 + L1M4 LINE L1 3791 4847 -1299 44411 35 1 4 chrX 108067674 108073849 -68900291 - L1PA3 LINE L1 0 6155 1 1220 307 139 67 chrX 108075351 108076231 -68897909 - L2 LINE L2 -1 3312 2497 593 247 46 29 chrX 108076231 108076405 -68897735 - MER5B DNA MER1_type -1 177 1 1220 307 139 67 chrX 108076405 108077330 -68896810 - L2 LINE L2 -816 2497 1363 2029 158 14 33 chrX 108078162 108078524 -68895616 - MLT1A1 LTR MaLR -1 364 10 1388 150 33 4 chrX 108078533 108078773 -68895367 - MLT1A1-int LTR MaLR 0 1735 1489 2430 198 24 13 chrX 108078780 108079339 -68894801 - MLT2B1 LTR ERVL -6 548 1 324 296 74 19 chrX 108079432 108079540 -68894600 + L2 LINE L2 3153 3266 -6 32 0 0 0 chrX 108079617 108079649 -68894491 + AT_rich Low_complexity Low_complexity 1 32 0 2958 91 37 0 chrX 108079708 108080137 -68894003 - L1PA13 LINE L1 -2 6161 5717 2449 136 26 7 chrX 108080137 108080826 -68893314 + L1P4 LINE L1 4917 5611 -552 648 235 47 52 chrX 108080962 108081175 -68892965 + MIR SINE MIR 51 262 0 12753 163 26 45 chrX 108081433 108084202 -68889938 + L1MA9 LINE L1 2446 5115 -1197 2282 89 10 0 chrX 108084202 108084505 -68889635 + AluSc SINE Alu 1 306 -3 12753 163 26 45 chrX 108084505 108085351 -68888789 + L1MA9 LINE L1 5115 5976 -336 585 198 43 0 chrX 108085351 108085467 -68888673 + MLT1A1 LTR MaLR 1 121 -244 23507 157 54 24 chrX 108085467 108089142 -68884998 + L1PA11 LINE L1 4 4122 -2367 369 62 0 0 chrX 108089142 108089190 -68884950 + (CAA)n Simple_repeat Simple_repeat 3 50 0 23507 157 54 24 chrX 108089190 108091616 -68882524 + L1PA11 LINE L1 4122 6473 -16 1311 175 18 9 chrX 108091640 108091869 -68882271 + MLT1A1 LTR MaLR 112 342 -23 1831 136 43 9 chrX 108091869 108092214 -68881926 + L1MA9 LINE L1 5956 6312 0 1548 171 95 0 chrX 108092369 108092643 -68881497 - AluJb SINE Alu -12 300 1 230 314 0 43 chrX 108092754 108092824 -68881316 + L2 LINE L2 3227 3293 -20 192 381 52 0 chrX 108093017 108093114 -68881026 + MIR3 SINE MIR 106 207 -1 22 56 0 0 chrX 108093201 108093237 -68880903 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chrX 108093352 108093389 -68880751 + AT_rich Low_complexity Low_complexity 1 37 0 388 210 7 4 chrX 108094250 108094332 -68879808 + MER5A DNA MER1_type 16 103 -80 195 274 170 78 chrX 108094258 108094411 -68879729 - MER5A DNA MER1_type -22 167 1 * 27 29 0 0 chrX 108094698 108094732 -68879408 + AT_rich Low_complexity Low_complexity 1 34 0 27 73 0 0 chrX 108095403 108095458 -68878682 + AT_rich Low_complexity Low_complexity 1 55 0 2089 124 3 7 chrX 108095552 108095851 -68878289 + AluSx SINE Alu 1 298 -14 1877 148 13 7 chrX 108095901 108096204 -68877936 + AluSx SINE Alu 1 305 -7 466 129 0 0 chrX 108096320 108096390 -68877750 - MER4A LTR ERV1 0 664 595 474 158 58 137 chrX 108096390 108096551 -68877589 - MER4A-int LTR ERV1 -4327 2004 1265 259 156 0 111 chrX 108096597 108096687 -68877453 - MER4A-int LTR ERV1 -5768 830 751 2637 93 74 12 chrX 108096736 108097230 -68876910 - MER4A-int LTR ERV1 -6009 589 1 1881 137 3 19 chrX 108097232 108097583 -68876557 - MER4A LTR ERV1 0 664 261 592 152 0 10 chrX 108097583 108097682 -68876458 - MER4A LTR ERV1 -566 98 1 29 28 0 0 chrX 108098829 108098865 -68875275 + AT_rich Low_complexity Low_complexity 1 36 0 770 320 111 31 chrX 108100784 108101559 -68872581 + L2 LINE L2 1738 2574 -740 969 268 16 21 chrX 108101617 108102005 -68872135 + L1MB5 LINE L1 3027 3412 -2734 4959 184 24 18 chrX 108102015 108103937 -68870203 + L1MB5 LINE L1 4219 6184 0 3454 222 36 27 chrX 108103967 108105195 -68868945 + L1ME1 LINE L1 4942 6177 -1 29 0 0 0 chrX 108105218 108105247 -68868893 + AT_rich Low_complexity Low_complexity 1 29 0 471 241 93 0 chrX 108105318 108105426 -68868714 + FLAM_A SINE Alu 6 123 -19 5074 45 0 5 chrX 108105437 108106086 -68868054 + L1P LINE L1 3171 3816 -2330 1887 89 0 0 chrX 108306086 108306323 -68667817 - AluSq SINE Alu -76 237 1 1954 149 0 0 chrX 108306342 108306631 -68667509 - AluSx SINE Alu -23 289 1 268 306 216 0 chrX 108306746 108306857 -68667283 + L2 LINE L2 3137 3271 -1 1895 80 4 0 chrX 108307269 108307507 -68666633 + AluSg/x SINE Alu 71 309 -1 397 179 85 150 chrX 108307517 108307763 -68666377 - L1MC5 LINE L1 0 7961 7732 242 29 29 0 chrX 108308482 108308517 -68665623 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 381 43 0 0 chrX 108308516 108308563 -68665577 + (GA)n Simple_repeat Simple_repeat 1 47 0 508 255 93 77 chrX 108310264 108310505 -68663635 + MIR SINE MIR 1 246 -16 380 310 76 12 chrX 108310746 108310917 -68663223 + MIR SINE MIR 81 262 0 221 415 15 22 chrX 108311265 108311400 -68662740 + MIR3 SINE MIR 12 145 -63 2422 57 0 7 chrX 108312033 108312330 -68661810 - AluY SINE Alu -16 295 1 2363 83 0 13 chrX 108312332 108312646 -68661494 - AluSx SINE Alu 0 312 3 204 203 31 16 chrX 108312727 108312791 -68661349 + (TG)n Simple_repeat Simple_repeat 1 65 0 1921 111 25 0 chrX 108313030 108313309 -68660831 + AluSx SINE Alu 1 286 -26 1535 134 90 14 chrX 108313914 108314191 -68659949 + AluJb SINE Alu 1 298 -14 21 0 0 0 chrX 108314258 108314279 -68659861 + AT_rich Low_complexity Low_complexity 1 21 0 5345 187 70 29 chrX 108314515 108315434 -68658706 - Charlie1a DNA MER1_type -1306 1455 461 2674 24 0 0 chrX 108315434 108315732 -68658408 - AluY SINE Alu -13 298 1 5345 187 70 29 chrX 108315732 108316146 -68657994 - Charlie1a DNA MER1_type -2300 461 66 2053 109 3 33 chrX 108316491 108316795 -68657345 - AluSg SINE Alu -15 295 1 21 0 0 0 chrX 108316806 108316827 -68657313 + AT_rich Low_complexity Low_complexity 1 21 0 2288 68 14 0 chrX 108316899 108317191 -68656949 + AluSp SINE Alu 1 296 -17 2184 118 0 3 chrX 108317494 108317799 -68656341 + AluSg SINE Alu 1 304 -6 598 214 0 17 chrX 108318816 108318933 -68655207 + L2 LINE L2 3199 3313 0 186 43 0 0 chrX 108320120 108320143 -68653997 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1587 160 14 14 chrX 108320145 108320426 -68653714 - AluJb SINE Alu -31 281 1 963 116 0 20 chrX 108322148 108322294 -68651846 + FLAM_C SINE Alu 1 143 0 4943 193 41 24 chrX 108322461 108323165 -68650975 + L1MD1 LINE L1 4581 5272 -970 1653 170 50 0 chrX 108323165 108323448 -68650692 + AluJo SINE Alu 1 297 -15 4943 193 41 24 chrX 108323448 108324357 -68649783 + L1MD1 LINE L1 5272 6242 0 207 0 0 0 chrX 108324469 108324492 -68649648 + (T)n Simple_repeat Simple_repeat 1 23 0 2118 52 0 0 chrX 108324492 108324740 -68649400 - AluY SINE Alu -63 248 1 1031 266 57 24 chrX 108324969 108325303 -68648837 + L2 LINE L2 2969 3313 0 2005 136 0 7 chrX 108325406 108325701 -68648439 + AluSx SINE Alu 1 293 -19 1645 150 103 7 chrX 108326623 108326896 -68647244 - AluJo SINE Alu -13 299 1 2542 56 0 0 chrX 108327440 108327745 -68646395 + AluY SINE Alu 1 305 -6 1846 183 56 14 chrX 108327888 108328304 -68645836 + L1MB8 LINE L1 5708 6146 -32 2482 68 3 0 chrX 108328304 108328599 -68645541 + AluSp SINE Alu 1 296 -17 1846 183 56 14 chrX 108328599 108328625 -68645515 + L1MB8 LINE L1 6146 6169 -9 2058 140 3 3 chrX 108329179 108329479 -68644661 + AluSx SINE Alu 1 300 -12 2274 110 3 0 chrX 108330061 108330371 -68643769 - AluSq SINE Alu -2 311 1 845 163 0 41 chrX 108330829 108330976 -68643164 - FLAM_C SINE Alu -2 141 1 1865 175 10 0 chrX 108331637 108331946 -68642194 - AluSx SINE Alu 0 312 1 2359 85 7 0 chrX 108331989 108332294 -68641846 + AluY SINE Alu 1 307 -4 1397 110 4 48 chrX 108332451 108332678 -68641462 + AluJb SINE Alu 85 301 -11 453 280 109 11 chrX 108332773 108332948 -68641192 - MIR SINE MIR -10 252 61 2166 126 0 0 chrX 108332949 108333251 -68640889 + AluSg SINE Alu 3 304 -6 2343 115 0 6 chrX 108334110 108334424 -68639716 - AluSx SINE Alu 0 312 1 347 283 98 5 chrX 108334547 108334752 -68639388 + L1ME4a LINE L1 5671 5894 -227 262 65 0 0 chrX 108335420 108335466 -68638674 + Alu SINE Alu 257 302 0 1838 139 24 7 chrX 108335537 108335861 -68638279 - AluSx SINE Alu 0 312 1 2228 83 4 0 chrX 108336199 108336498 -68637642 + AluSg SINE Alu 1 300 0 2097 40 44 15 chrX 108336499 108336802 -68637338 + AluY SINE Alu 1 311 0 204 234 125 0 chrX 108337461 108337525 -68636615 + L3 LINE CR1 790 861 -716 248 328 0 0 chrX 108337667 108337734 -68636406 - MIR SINE MIR -102 106 40 24 32 0 0 chrX 108341107 108341138 -68633002 + GC_rich Low_complexity Low_complexity 1 31 0 805 129 8 16 chrX 108343830 108343954 -68630186 + FLAM_C SINE Alu 3 125 -18 21 0 0 0 chrX 108343954 108343975 -68630165 + AT_rich Low_complexity Low_complexity 1 21 0 317 172 52 0 chrX 108344534 108344592 -68629548 + L2 LINE L2 3209 3269 -3 2113 134 0 0 chrX 108345060 108345359 -68628781 - AluSq SINE Alu -14 299 1 309 68 0 0 chrX 108345383 108345427 -68628713 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 25 31 0 0 chrX 108346174 108346206 -68627934 + AT_rich Low_complexity Low_complexity 1 32 0 1849 176 27 5 chrX 108346652 108346991 -68627149 - MER57A LTR ERV1 0 403 54 1770 151 17 7 chrX 108346991 108347282 -68626858 - AluJb SINE Alu -18 294 1 1849 176 27 5 chrX 108347282 108347312 -68626828 - MER57A LTR ERV1 -349 54 26 1807 162 3 10 chrX 108347533 108347823 -68626317 + AluJb SINE Alu 14 301 -11 513 231 24 6 chrX 108347823 108347926 -68626214 + GA-rich Low_complexity Low_complexity 1 110 -62 1432 82 0 0 chrX 108347926 108348122 -68626018 + L1PA5 LINE L1 5959 6154 0 513 231 24 6 chrX 108348122 108348187 -68625953 + GA-rich Low_complexity Low_complexity 110 172 0 1909 106 50 26 chrX 108348287 108348589 -68625551 - AluSx SINE Alu -3 309 1 180 0 0 0 chrX 108349072 108349092 -68625048 + (TG)n Simple_repeat Simple_repeat 1 20 0 225 65 0 0 chrX 108349092 108349123 -68625017 + (GA)n Simple_repeat Simple_repeat 2 32 0 1728 126 19 40 chrX 108349245 108349570 -68624570 + L1MB8 LINE L1 5842 6159 -19 1683 199 51 29 chrX 108349573 108349985 -68624155 - MER57B LTR ERV1 -13 421 1 628 215 15 0 chrX 108350802 108350932 -68623208 - MER58B DNA MER1_type 0 341 210 2216 109 3 0 chrX 108350933 108351235 -68622905 + AluSx SINE Alu 1 303 -9 1995 139 0 37 chrX 108351236 108351560 -68622580 + AluSx SINE Alu 1 312 0 1123 121 0 11 chrX 108351560 108351734 -68622406 + AluSg/x SINE Alu 132 303 -7 1890 81 97 8 chrX 108351737 108352022 -68622118 + AluSc SINE Alu 1 308 0 526 284 74 16 chrX 108352384 108352574 -68621566 - MIR SINE MIR -4 258 58 444 179 0 0 chrX 108352787 108352865 -68621275 + MLT1A1 LTR MaLR 1 78 -287 2255 116 0 0 chrX 108352942 108353235 -68620905 - AluSx SINE Alu -17 295 3 958 142 0 0 chrX 108353242 108353376 -68620764 - AluSq/x SINE Alu -178 134 1 294 317 89 10 chrX 108353626 108353727 -68620413 - MIR3 SINE MIR -6 202 94 26 0 0 0 chrX 108354908 108354934 -68619206 + AT_rich Low_complexity Low_complexity 1 26 0 324 0 0 0 chrX 108354969 108355005 -68619135 + (T)n Simple_repeat Simple_repeat 1 36 0 30 0 0 0 chrX 108355236 108355266 -68618874 + AT_rich Low_complexity Low_complexity 1 30 0 1633 157 4 8 chrX 108355503 108355771 -68618369 + AluJo SINE Alu 11 277 -35 233 0 62 0 chrX 108355771 108355803 -68618337 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 * 521 228 11 11 chrX 108355772 108355952 -68618188 + CT-rich Low_complexity Low_complexity 1 180 0 2017 148 0 3 chrX 108355952 108356250 -68617890 - AluSx SINE Alu -15 297 1 379 232 45 136 chrX 108357024 108357244 -68616896 + MIR SINE MIR 36 235 -27 254 324 72 36 chrX 108357273 108357412 -68616728 + L2 LINE L2 2945 3088 -184 2038 192 96 28 chrX 108357509 108357968 -68616172 + LTR2B LTR ERV1 1 490 0 2702 112 2 15 chrX 108357970 108358372 -68615768 + Harlequin LTR ERV1 3 399 -6497 1401 99 5 0 chrX 108358352 108358553 -68615587 + Harlequin LTR ERV1 263 464 -6432 * 8848 58 12 16 chrX 108358553 108359706 -68614434 + Harlequin LTR ERV1 263 1411 -5485 * 24813 57 5 7 chrX 108359698 108360534 -68613606 + Harlequin LTR ERV1 1808 2644 -4252 1851 57 0 13 chrX 108360534 108360762 -68613378 - AluY SINE Alu -15 296 72 24813 57 5 7 chrX 108360762 108364967 -68609173 + Harlequin LTR ERV1 2644 6896 0 2187 178 91 30 chrX 108364967 108365429 -68608711 + LTR2B LTR ERV1 1 490 0 702 125 78 55 chrX 108365508 108365636 -68608504 - AluJb SINE Alu -19 293 163 345 311 80 40 chrX 108365687 108365838 -68608302 + L2 LINE L2 3115 3271 -1 1833 144 7 27 chrX 108365941 108366240 -68607900 - AluJb SINE Alu -15 297 5 306 165 55 55 chrX 108367620 108367711 -68606429 - L1ME4a LINE L1 -4 6117 6027 420 225 81 72 chrX 108367753 108367989 -68606151 - L1ME4a LINE L1 -175 5946 5709 2114 88 0 41 chrX 108367993 108368315 -68605825 + AluSx SINE Alu 1 310 0 1253 161 92 12 chrX 108368464 108368574 -68605566 + AluJb SINE Alu 13 113 -199 455 0 18 0 chrX 108368574 108368629 -68605511 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 1253 161 92 12 chrX 108368629 108368798 -68605342 + AluJb SINE Alu 113 312 0 313 258 52 52 chrX 108369034 108369189 -68604951 - L1ME4a LINE L1 -866 5280 5126 764 260 6 6 chrX 108369634 108369811 -68604329 + MER5A DNA MER1_type 7 183 -6 1001 173 17 0 chrX 108369893 108370066 -68604074 + AluJb SINE Alu 137 312 0 1488 167 56 21 chrX 108370267 108370555 -68603585 + AluJb SINE Alu 9 306 -6 441 0 0 0 chrX 108371151 108371200 -68602940 + (ATGTG)n Simple_repeat Simple_repeat 5 53 0 184 319 94 14 chrX 108371657 108371795 -68602345 + MIR SINE MIR 48 196 -66 196 273 15 0 chrX 108371844 108371910 -68602230 + MIR SINE MIR 171 237 -25 30 0 0 0 chrX 108372508 108372538 -68601602 + AT_rich Low_complexity Low_complexity 1 30 0 279 0 0 0 chrX 108372748 108372779 -68601361 + (CA)n Simple_repeat Simple_repeat 2 32 0 339 65 0 0 chrX 108372822 108372868 -68601272 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1400 156 121 4 chrX 108372868 108373024 -68601116 - AluJo SINE Alu -26 286 150 351 0 0 0 chrX 108373024 108373063 -68601077 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1400 156 121 4 chrX 108373063 108373162 -68600978 - AluJo SINE Alu -162 150 1 185 62 0 31 chrX 108373204 108373236 -68600904 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 723 179 14 14 chrX 108373253 108373393 -68600747 + FLAM_C SINE Alu 3 142 -1 623 77 0 22 chrX 108374535 108374626 -68599514 + MER53 DNA DNA 2 90 -99 545 141 37 44 chrX 108374550 108374685 -68599455 - MER53 DNA DNA -7 182 49 * 902 154 0 0 chrX 108375233 108375363 -68598777 + FLAM_C SINE Alu 1 130 -3 1087 152 0 0 chrX 108375379 108375537 -68598603 - AluJo SINE Alu -20 292 135 23 33 0 0 chrX 108375680 108375710 -68598430 + AT_rich Low_complexity Low_complexity 1 30 0 1427 205 7 43 chrX 108375854 108376157 -68597983 + AluJo SINE Alu 1 292 -20 1107 225 49 62 chrX 108376308 108376418 -68597722 + L1M4 LINE L1 3957 4067 -2079 1038 107 6 24 chrX 108376418 108376586 -68597554 + L1MA4A LINE L1 6137 6301 -2 1107 225 49 62 chrX 108376586 108376799 -68597341 + L1M4 LINE L1 4067 4276 -1870 1975 124 0 0 chrX 108376800 108377067 -68597073 - AluSx SINE Alu -45 267 1 192 77 0 0 chrX 108377248 108377274 -68596866 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 986 126 0 15 chrX 108377276 108377411 -68596729 - AluJo SINE Alu -169 133 1 419 267 41 14 chrX 108377430 108377576 -68596564 + MIR3 SINE MIR 18 167 -41 24 32 0 0 chrX 108377788 108377819 -68596321 + AT_rich Low_complexity Low_complexity 1 31 0 1655 163 6 66 chrX 108377964 108378283 -68595857 + AluSx SINE Alu 1 300 -12 2207 136 0 0 chrX 108378675 108378985 -68595155 - AluSx SINE Alu -2 310 1 26 0 0 0 chrX 108379029 108379055 -68595085 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chrX 108379266 108379303 -68594837 + (TG)n Simple_repeat Simple_repeat 2 38 0 634 155 16 78 chrX 108379355 108379484 -68594656 - AluJb SINE Alu -101 211 91 920 129 0 0 chrX 108379484 108379616 -68594524 - AluSq/x SINE Alu -181 132 1 24 32 0 0 chrX 108379757 108379788 -68594352 + AT_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chrX 108380281 108380313 -68593827 + AT_rich Low_complexity Low_complexity 1 32 0 799 181 8 8 chrX 108380314 108380447 -68593693 - AluJb SINE Alu -179 133 1 187 394 0 0 chrX 108380569 108380640 -68593500 + MIR SINE MIR 45 115 -93 223 375 0 0 chrX 108380929 108381025 -68593115 - MIR SINE MIR -1 261 166 227 285 86 60 chrX 108381199 108381350 -68592790 + L3 LINE CR1 209 363 -1214 22 0 0 0 chrX 108381405 108381427 -68592713 + AT_rich Low_complexity Low_complexity 1 22 0 1708 172 48 3 chrX 108381887 108382178 -68591962 - AluJo SINE Alu -8 304 1 198 0 0 0 chrX 108382475 108382497 -68591643 + (T)n Simple_repeat Simple_repeat 1 22 0 203 184 41 61 chrX 108383006 108383055 -68591085 - MER5B DNA MER1_type -3 175 128 186 43 0 0 chrX 108383196 108383219 -68590921 + (CA)n Simple_repeat Simple_repeat 2 24 0 312 27 0 0 chrX 108383221 108383258 -68590882 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 441 0 0 0 chrX 108383257 108383306 -68590834 + (TA)n Simple_repeat Simple_repeat 1 49 0 1687 180 0 7 chrX 108383309 108383593 -68590547 - AluJb SINE Alu -30 282 1 383 318 205 0 chrX 108383781 108383932 -68590208 - MER91A DNA MER1_type 0 196 15 357 307 58 42 chrX 108383938 108384127 -68590013 + MER117 DNA MER1_type 2 193 -4 575 138 11 0 chrX 108384544 108384638 -68589502 + MER53 DNA DNA 95 189 0 307 113 19 0 chrX 108384666 108384719 -68589421 - L1MA9 LINE L1 -5 6307 6254 2376 147 17 0 chrX 108384733 108385093 -68589047 - MER47A DNA MER2_type 0 366 1 1530 167 26 68 chrX 108385655 108385676 -68588464 - AluJo SINE Alu -4 298 278 207 0 0 0 chrX 108385676 108385699 -68588441 + (TATG)n Simple_repeat Simple_repeat 3 25 0 1530 167 26 68 chrX 108385699 108385924 -68588216 - AluJo SINE Alu -24 278 65 2150 115 7 0 chrX 108385924 108386219 -68587921 + AluSx SINE Alu 1 297 -15 1530 167 26 68 chrX 108386219 108386282 -68587858 - AluJo SINE Alu -237 65 1 230 135 27 122 chrX 108386303 108386377 -68587763 - L1ME1 LINE L1 -4 6162 6096 656 239 6 25 chrX 108386380 108386539 -68587601 - L1ME1 LINE L1 0 6166 6011 1309 245 147 33 chrX 108386539 108387021 -68587119 - MLT1E1 LTR MaLR 0 654 118 821 224 37 86 chrX 108387051 108387183 -68586957 - L1MD2 LINE L1 -311 6033 5896 1995 142 10 16 chrX 108387183 108387494 -68586646 - AluJo SINE Alu -3 309 1 821 224 37 86 chrX 108387494 108387653 -68586487 - L1MD2 LINE L1 -448 5896 5753 355 302 9 9 chrX 108387833 108387939 -68586201 - MIR SINE MIR -119 143 38 2266 84 0 42 chrX 108387962 108388273 -68585867 - AluSx SINE Alu -14 298 1 393 343 27 7 chrX 108388472 108388618 -68585522 + MIR SINE MIR 34 182 -80 2429 80 0 3 chrX 108389025 108389336 -68584804 + AluSg SINE Alu 1 310 0 2252 86 164 0 chrX 108389413 108389737 -68584403 - MER51B LTR ERV1 0 377 1 2211 53 19 0 chrX 108389764 108390030 -68584110 + L1PA13 LINE L1 5891 6161 -2 410 289 150 17 chrX 108390793 108390966 -68583174 - MIR SINE MIR -20 242 47 774 204 12 43 chrX 108390971 108391133 -68583007 + AluJo SINE Alu 122 278 -34 439 253 144 57 chrX 108392204 108392433 -68581707 + MER50 LTR ERV1 22 270 -464 724 117 0 0 chrX 108392435 108392538 -68581602 - LTR12 LTR ERV1 0 714 612 339 245 10 0 chrX 108392538 108392636 -68581504 - LTR30 LTR ERV1 -80 642 544 1496 88 82 111 chrX 108392636 108393007 -68581133 - LTR12 LTR ERV1 -421 2017 57 245 231 0 0 chrX 108393007 108393059 -68581081 - LTR30 LTR ERV1 -670 52 1 431 242 16 8 chrX 108393090 108393214 -68580926 + MER50 LTR ERV1 312 436 -298 240 250 0 0 chrX 108393332 108393384 -68580756 + LTR30 LTR ERV1 1 52 -670 1433 83 57 136 chrX 108393388 108393691 -68580449 + LTR12 LTR ERV1 57 2017 -421 361 245 10 0 chrX 108393691 108393789 -68580351 + LTR30 LTR ERV1 544 642 -80 23718 99 11 22 chrX 108393789 108397260 -68576880 + HERV9 LTR ERV1 1 3330 -2001 1982 88 0 0 chrX 108397257 108397518 -68576622 + HERV9 LTR ERV1 7592 7852 -547 * 788 195 0 0 chrX 108397639 108397757 -68576383 - FLAM_C SINE Alu -15 118 1 207 285 92 85 chrX 108397863 108397993 -68576147 + L2 LINE L2 2230 2360 -954 1944 162 3 0 chrX 108397993 108398296 -68575844 + AluJo SINE Alu 1 304 -8 12503 150 65 49 chrX 108398599 108399026 -68575114 + L1MCa LINE L1 19 438 -5988 1922 175 0 0 chrX 108399026 108399334 -68574806 - AluSx SINE Alu -4 308 1 12503 150 65 49 chrX 108399334 108399371 -68574769 + L1MCa LINE L1 438 473 -5953 1675 182 0 21 chrX 108399371 108399657 -68574483 - AluJb SINE Alu -16 296 17 12503 150 65 49 chrX 108399657 108401498 -68572642 + L1MCa LINE L1 473 2283 -4143 1973 159 0 3 chrX 108401498 108401824 -68572316 - AluSx SINE Alu 0 312 5 12503 150 65 49 chrX 108401824 108401938 -68572202 + L1MCa LINE L1 2283 2394 -4032 2131 117 14 0 chrX 108401938 108402229 -68571911 + AluSq SINE Alu 1 295 -18 12503 150 65 49 chrX 108402229 108402904 -68571236 + L1MCa LINE L1 2394 3185 -3241 749 155 31 0 chrX 108402909 108403038 -68571102 + AluSq/x SINE Alu 1 133 -180 540 210 48 85 chrX 108403340 108403588 -68570552 - LTR16A1 LTR ERVL -135 322 84 336 191 0 16 chrX 108404000 108404063 -68570077 - Charlie2 DNA MER1_type -2 2860 2799 816 164 0 45 chrX 108404072 108404206 -68569934 - FLAM_C SINE Alu -10 133 6 2110 184 75 94 chrX 108404223 108404456 -68569684 - Charlie2 DNA MER1_type -68 2794 2558 1965 172 0 16 chrX 108404456 108404770 -68569370 - AluJb SINE Alu 0 312 4 2110 184 75 94 chrX 108404770 108404798 -68569342 - Charlie2 DNA MER1_type -304 2558 2531 2386 94 3 0 chrX 108404798 108405097 -68569043 - AluSx SINE Alu -11 301 2 2110 184 75 94 chrX 108405097 108405784 -68568356 - Charlie2 DNA MER1_type -331 2531 1863 810 203 126 5 chrX 108405814 108406021 -68568119 - Charlie2 DNA MER1_type -2538 324 93 213 114 29 0 chrX 108406775 108406810 -68567330 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 378 97 42 chrX 108407015 108407557 -68566583 + L2 LINE L2 2513 3024 -248 2032 154 0 0 chrX 108407557 108407868 -68566272 - AluSx SINE Alu -1 311 1 349 378 97 42 chrX 108407868 108407940 -68566200 + L2 LINE L2 3024 3091 -181 1958 161 3 7 chrX 108407940 108408245 -68565895 - AluJb SINE Alu -7 305 2 349 378 97 42 chrX 108408245 108408350 -68565790 + L2 LINE L2 3091 3260 -12 21 0 0 0 chrX 108409147 108409168 -68564972 + AT_rich Low_complexity Low_complexity 1 21 0 666 340 159 32 chrX 108409666 108410457 -68563683 - L2 LINE L2 -405 2909 2018 352 161 25 0 chrX 108411342 108411423 -68562717 + GA-rich Low_complexity Low_complexity 2 84 0 395 218 97 36 chrX 108412247 108412412 -68561728 - L1ME4a LINE L1 -11 6110 5936 371 147 38 38 chrX 108412427 108412503 -68561637 - L1ME4a LINE L1 -786 5392 5332 1159 98 12 6 chrX 108412503 108412676 -68561464 + L1PB1 LINE L1 5973 6146 -5 1533 232 28 0 chrX 108412713 108413135 -68561005 - L1ME4a LINE L1 -795 5351 4918 374 252 7 27 chrX 108413189 108413336 -68560804 + L1ME4a LINE L1 5695 5838 -283 861 146 55 18 chrX 108413350 108413515 -68560625 - THE1C LTR MaLR -203 172 2 1902 167 10 13 chrX 108413516 108413906 -68560234 + L1MB5 LINE L1 5763 6151 -23 26 0 0 0 chrX 108413913 108413939 -68560201 + AT_rich Low_complexity Low_complexity 1 26 0 1219 226 150 47 chrX 108414251 108414703 -68559437 - MLT1D LTR MaLR -6 499 1 2942 188 11 38 chrX 108415390 108415493 -68558647 - L1MB7 LINE L1 -20 6164 6060 1854 127 53 61 chrX 108415493 108415871 -68558269 + THE1C LTR MaLR 1 375 0 2942 188 11 38 chrX 108415871 108416040 -68558100 - L1MB7 LINE L1 -124 6060 5888 2256 96 0 0 chrX 108416040 108416320 -68557820 - AluSx SINE Alu -32 280 1 2942 188 11 38 chrX 108416320 108416779 -68557361 - L1MB7 LINE L1 -296 5888 5452 1800 169 102 5 chrX 108416783 108417205 -68556935 - L1MC2 LINE L1 -47 6297 5829 2910 108 2 0 chrX 108417205 108417632 -68556508 - L1PA14 LINE L1 -9 6152 5725 1800 169 102 5 chrX 108417632 108417648 -68556492 - L1MC2 LINE L1 -515 5829 5816 926 185 40 5 chrX 108417704 108417956 -68556184 - L1MB7 LINE L1 -738 5440 5180 1838 158 0 26 chrX 108418136 108418439 -68555701 + AluJb SINE Alu 1 295 -17 309 68 0 0 chrX 108418439 108418483 -68555657 + (GGA)n Simple_repeat Simple_repeat 1 44 0 808 245 16 0 chrX 108418657 108418841 -68555299 - MER5A DNA MER1_type -2 187 1 823 212 0 30 chrX 108419038 108419203 -68554937 - FRAM SINE Alu -20 156 1 264 238 57 0 chrX 108419203 108419308 -68554832 + MER103 DNA DNA 52 162 -4 2706 207 24 68 chrX 108419326 108420306 -68553834 - L1ME1 LINE L1 -4 6162 5236 659 171 62 0 chrX 108420421 108420550 -68553590 - MLT1A1 LTR MaLR 0 365 229 2057 145 0 19 chrX 108420580 108420897 -68553243 + AluJb SINE Alu 1 311 -1 684 174 18 138 chrX 108420965 108421100 -68553040 - MLT1A1 LTR MaLR -171 194 93 2026 131 3 35 chrX 108421100 108421413 -68552727 - AluJo SINE Alu -8 304 2 684 174 18 138 chrX 108421413 108421495 -68552645 - MLT1A1 LTR MaLR -272 93 3 240 299 8 8 chrX 108421497 108421591 -68552549 - MER5A DNA MER1_type -93 96 4 926 266 69 82 chrX 108421754 108422364 -68551776 + MLT1L LTR MaLR 1 602 -13 232 337 12 0 chrX 108422740 108422826 -68551314 + L2 LINE L2 2413 2499 -815 2126 167 24 3 chrX 108422833 108423210 -68550930 - MSTB LTR MaLR 0 426 42 380 357 95 48 chrX 108423238 108423953 -68550187 + L2 LINE L2 2503 3259 -54 1490 201 30 27 chrX 108424211 108424525 -68549615 - AluJb SINE Alu 0 450 133 2089 102 34 14 chrX 108424525 108424682 -68549458 - AluSx SINE Alu -12 300 133 2172 106 14 0 chrX 108424682 108424975 -68549165 - AluSp SINE Alu -16 297 1 2089 102 34 14 chrX 108424975 108425111 -68549029 - AluSx SINE Alu -179 133 1 1490 201 30 27 chrX 108425111 108425244 -68548896 - AluJb SINE Alu -317 133 2 5650 243 143 22 chrX 108425762 108426370 -68547770 - L2 LINE L2 -4 3309 2776 2341 138 46 14 chrX 108426370 108426783 -68547357 - MSTA LTR MaLR 0 428 3 5650 243 143 22 chrX 108426783 108428258 -68545882 - L2 LINE L2 -537 2776 971 350 228 0 40 chrX 108428362 108428463 -68545677 + MARNA DNA Mariner 462 558 -28 34 42 0 0 chrX 108428777 108428825 -68545315 + AT_rich Low_complexity Low_complexity 1 48 0 261 353 118 0 chrX 108428920 108429039 -68545101 - MIR SINE MIR -51 211 79 1999 159 3 0 chrX 108429122 108429418 -68544722 - AluJb SINE Alu -15 297 1 29 0 0 0 chrX 108429459 108429488 -68544652 + AT_rich Low_complexity Low_complexity 1 29 0 1518 172 39 78 chrX 108430976 108431360 -68542780 - MLT1A2 LTR MaLR 0 374 6 1527 119 5 5 chrX 108431941 108432159 -68541981 + AluSg/x SINE Alu 85 302 -10 22 0 0 0 chrX 108432187 108432209 -68541931 + AT_rich Low_complexity Low_complexity 1 22 0 2313 101 3 3 chrX 108432293 108432600 -68541540 - AluSp SINE Alu -6 307 1 2050 197 50 2 chrX 108432604 108433041 -68541099 - L1MB5 LINE L1 0 6174 5717 799 155 61 14 chrX 108433956 108434104 -68540036 + FRAM SINE Alu 1 155 -11 22 0 0 0 chrX 108434317 108434339 -68539801 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 108434899 108434921 -68539219 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1776 174 11 0 chrX 108434927 108435202 -68538938 - AluJb SINE Alu -34 278 1 1757 180 7 7 chrX 108435452 108435735 -68538405 + AluJb SINE Alu 1 283 -29 1675 173 16 16 chrX 108435974 108436286 -68537854 - AluJb SINE Alu 0 312 1 1200 211 11 29 chrX 108437103 108437378 -68536762 - AluJb SINE Alu -7 305 36 1463 288 49 42 chrX 108437742 108437878 -68536262 - L2 LINE L2 0 3313 3180 2493 53 0 3 chrX 108437878 108438180 -68535960 - AluY SINE Alu -10 301 1 1463 288 49 42 chrX 108438180 108438658 -68535482 - L2 LINE L2 -133 3180 2682 2357 69 31 0 chrX 108439423 108439713 -68534427 + AluSp SINE Alu 2 300 -13 25 0 0 0 chrX 108439800 108439825 -68534315 + AT_rich Low_complexity Low_complexity 1 25 0 994 233 23 5 chrX 108440758 108440977 -68533163 - MER58A DNA MER1_type 0 224 2 1308 155 44 48 chrX 108441058 108441329 -68532811 - AluJo SINE Alu -25 287 18 411 216 102 27 chrX 108441907 108442060 -68532080 - MIR SINE MIR -46 162 3 1529 84 192 16 chrX 108443688 108443938 -68530202 + AluSq SINE Alu 2 295 -8 325 182 0 15 chrX 108443938 108444004 -68530136 - AluJo SINE Alu -165 137 73 504 0 0 0 chrX 108444006 108444062 -68530078 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1957 141 26 7 chrX 108444062 108444091 -68530049 - AluSx SINE Alu 0 312 285 216 0 0 0 chrX 108444091 108444115 -68530025 + (CTTG)n Simple_repeat Simple_repeat 1 24 0 1957 141 26 7 chrX 108444115 108444391 -68529749 - AluSx SINE Alu -27 285 1 392 247 0 0 chrX 108444458 108444551 -68529589 + L1ME4a LINE L1 5799 5891 -230 392 224 51 106 chrX 108444707 108444849 -68529291 - MLT1L LTR MaLR -146 469 238 327 224 98 14 chrX 108445077 108445220 -68528920 + L1ME4a LINE L1 5964 6118 -3 2034 147 0 6 chrX 108445550 108445864 -68528276 - AluJo SINE Alu 0 312 1 2108 112 0 3 chrX 108446657 108446968 -68527172 + AluSg SINE Alu 1 310 0 189 0 0 0 chrX 108446984 108447005 -68527135 + (T)n Simple_repeat Simple_repeat 1 21 0 2212 108 9 16 chrX 108448408 108448723 -68525417 - AluSq SINE Alu 0 313 1 1512 179 20 10 chrX 108448824 108449120 -68525020 - AluJo SINE Alu -13 299 1 270 386 19 13 chrX 108450400 108450558 -68523582 + L2 LINE L2 2898 3056 -216 668 240 63 75 chrX 108450582 108450836 -68523304 - MIR SINE MIR 0 262 12 1702 136 74 57 chrX 108450840 108451207 -68522933 + THE1C LTR MaLR 3 375 0 996 270 72 38 chrX 108451559 108452144 -68521996 - L1ME2 LINE L1 -216 5948 5344 1579 216 115 4 chrX 108452177 108452630 -68521510 - L1ME1 LINE L1 -18 6148 5646 2354 151 19 0 chrX 108452640 108453051 -68521089 - MSTB2 LTR MaLR -36 421 3 1979 161 0 3 chrX 108453215 108453520 -68520620 - AluJb SINE Alu -8 304 1 418 287 60 78 chrX 108453526 108453857 -68520283 - L1ME2 LINE L1 -2395 3751 3427 27 0 0 0 chrX 108453859 108453886 -68520254 + AT_rich Low_complexity Low_complexity 1 27 0 500 310 58 27 chrX 108454068 108454689 -68519451 - L1MC4a LINE L1 -594 5577 5254 662 212 8 0 chrX 108454959 108455077 -68519063 - FLAM_A SINE Alu -14 119 1 335 200 89 50 chrX 108455126 108455166 -68518974 - L1MC4a LINE L1 -1464 4682 4645 2131 111 7 3 chrX 108455166 108455454 -68518686 + AluSq SINE Alu 1 289 -24 322 74 37 0 chrX 108455454 108455508 -68518632 + (TA)n Simple_repeat Simple_repeat 2 57 0 335 200 89 50 chrX 108455508 108455646 -68518494 - L1MC4a LINE L1 -1500 4646 4496 477 309 53 68 chrX 108455691 108455953 -68518187 - L1MC4a LINE L1 -1713 4433 4180 1757 160 12 35 chrX 108455953 108456272 -68517868 - AluJo SINE Alu 0 312 1 477 309 53 68 chrX 108456272 108456498 -68517642 - L1MC4a LINE L1 -1966 4180 3952 492 305 73 30 chrX 108456537 108456770 -68517370 - MIR SINE MIR -2 260 18 2543 206 71 18 chrX 108457172 108457836 -68516304 - L1MD2 LINE L1 -12 6347 5649 902 208 0 0 chrX 108457877 108458050 -68516090 - FRAM SINE Alu -3 173 1 418 259 20 117 chrX 108458394 108458487 -68515653 + MIR3 SINE MIR 31 97 -111 2154 122 3 0 chrX 108458487 108458790 -68515350 - AluSq SINE Alu -9 304 1 418 259 20 117 chrX 108458790 108458893 -68515247 + MIR3 SINE MIR 97 208 0 337 283 53 53 chrX 108459173 108459286 -68514854 - MER91C DNA MER1_type -26 114 2 264 297 44 0 chrX 108459291 108459382 -68514758 - L2 LINE L2 -992 2322 2228 2002 173 14 11 chrX 108460120 108460484 -68513656 + MLT1A1 LTR MaLR 1 365 0 374 246 102 6 chrX 108460521 108460688 -68513452 + MARNA DNA Mariner 186 368 -218 1544 60 5 0 chrX 108460692 108460891 -68513249 + L1PB1 LINE L1 5950 6149 -2 300 183 61 0 chrX 108461073 108461155 -68512985 + L1MB3 LINE L1 6097 6183 0 362 157 0 0 chrX 108461168 108461238 -68512902 + L1MB8 LINE L1 6103 6172 -6 330 326 67 21 chrX 108461448 108461641 -68512499 + MIR SINE MIR 20 221 -41 297 0 0 0 chrX 108463161 108463194 -68510946 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1030 220 115 14 chrX 108464071 108464415 -68509725 - MSTD LTR MaLR 0 428 1 228 111 0 0 chrX 108464745 108464781 -68509359 + (TC)n Simple_repeat Simple_repeat 1 36 0 3432 173 27 13 chrX 108464797 108465498 -68508642 - L1MB5 LINE L1 -14 6160 5450 2518 41 0 0 chrX 108465739 108466031 -68508109 + AluY SINE Alu 15 306 -5 2596 11 0 3 chrX 108466706 108466991 -68507149 - AluYa5 SINE Alu -11 300 17 628 284 82 0 chrX 108467002 108467196 -68506944 + MIR SINE MIR 53 262 0 3070 144 46 29 chrX 108467492 108467981 -68506159 - MER41D LTR ERV1 0 557 56 2263 84 0 3 chrX 108467981 108468307 -68505833 - AluSx SINE Alu 0 325 1 3070 144 46 29 chrX 108468307 108468364 -68505776 - MER41D LTR ERV1 -501 56 1 1222 255 154 0 chrX 108468453 108468822 -68505318 + L2 LINE L2 2888 3313 0 2401 80 3 0 chrX 108469239 108469539 -68504601 + AluSq SINE Alu 1 301 -12 182 273 91 15 chrX 108471210 108471276 -68502864 + MIR3 SINE MIR 5 75 -133 266 318 64 17 chrX 108471462 108471635 -68502505 + L2 LINE L2 1569 1749 -1565 234 196 0 0 chrX 108471838 108471884 -68502256 + (TA)n Simple_repeat Simple_repeat 1 46 0 1493 161 10 94 chrX 108471884 108472183 -68501957 - AluJb SINE Alu -38 274 1 1469 185 25 0 chrX 108474051 108474352 -68499788 + MER58B DNA MER1_type 28 335 -6 1718 187 0 0 chrX 108475130 108475414 -68498726 - AluJo SINE Alu -28 284 1 193 250 0 0 chrX 108475575 108475615 -68498525 - MIR3 SINE MIR -10 198 159 224 146 49 0 chrX 108476589 108476630 -68497510 + L2 LINE L2 3261 3303 -10 976 176 42 37 chrX 108476712 108476928 -68497212 + MER20 DNA MER1_type 1 217 -2 1706 161 19 9 chrX 108476982 108477299 -68496841 + L1MC1 LINE L1 5996 6315 -18 2226 131 19 27 chrX 108478074 108478441 -68495699 + THE1B LTR MaLR 1 364 0 879 132 0 0 chrX 108478986 108479115 -68495025 + AluSp/q SINE Alu 181 309 -4 307 283 47 38 chrX 108480419 108480525 -68493615 + L2 LINE L2 3158 3264 -8 1383 117 5 5 chrX 108480972 108481168 -68492972 - AluSq SINE Alu -117 196 1 270 298 11 32 chrX 108481735 108481829 -68492311 - MER5A DNA MER1_type -2 187 96 2617 143 10 24 chrX 108481908 108482417 -68491723 - L1MB7 LINE L1 -19 6165 5664 306 0 0 0 chrX 108482422 108482456 -68491684 + (TG)n Simple_repeat Simple_repeat 2 35 0 240 346 74 37 chrX 108483699 108483861 -68490279 - L2 LINE L2 -177 3095 2928 181 297 44 77 chrX 108484142 108484233 -68489907 - L2 LINE L2 -27 3286 3199 2048 100 58 7 chrX 108485432 108485723 -68488417 + AluSx SINE Alu 1 306 -6 500 271 142 88 chrX 108485772 108486111 -68488029 - L2 LINE L2 0 3272 2916 1381 339 71 29 chrX 108486162 108486993 -68487147 - L2 LINE L2 -469 2845 1980 520 300 37 84 chrX 108487704 108487767 -68486373 - MIR SINE MIR -1 261 197 984 178 72 19 chrX 108487767 108487975 -68486165 + MER20 DNA MER1_type 1 219 0 520 300 37 84 chrX 108487975 108488150 -68485990 - MIR SINE MIR -65 197 35 2011 150 0 0 chrX 108488150 108488443 -68485697 - AluSx SINE Alu -19 293 1 520 300 37 84 chrX 108488443 108488476 -68485664 - MIR SINE MIR -227 35 2 1672 159 51 7 chrX 108488671 108488966 -68485174 + AluJb SINE Alu 1 308 -4 1494 151 48 33 chrX 108488980 108489252 -68484888 + AluSx SINE Alu 36 311 -1 302 292 22 0 chrX 108489793 108489882 -68484258 - MER81 DNA DNA 0 114 24 349 241 262 7 chrX 108490141 108490282 -68483858 + MER5B DNA MER1_type 2 178 0 1852 203 0 3 chrX 108490291 108490646 -68483494 + MLT1A1 LTR MaLR 1 354 -11 443 209 0 0 chrX 108491278 108491364 -68482776 + MER72 LTR ERV1 10 95 -627 827 206 38 0 chrX 108491381 108491647 -68482493 + AluJb SINE Alu 147 418 0 3615 125 86 3 chrX 108491654 108491714 -68482426 + MER72 LTR ERV1 70 124 -598 198 0 0 0 chrX 108491714 108491736 -68482404 + (TCCC)n Simple_repeat Simple_repeat 4 25 0 3615 125 86 3 chrX 108491736 108492273 -68481867 + MER72 LTR ERV1 124 722 0 215 188 31 47 chrX 108492792 108492856 -68481284 + CT-rich Low_complexity Low_complexity 2 64 0 230 116 23 0 chrX 108492856 108492899 -68481241 + (CA)n Simple_repeat Simple_repeat 1 44 0 672 260 147 0 chrX 108494400 108494604 -68479536 - MIR SINE MIR 0 262 29 357 294 10 0 chrX 108494762 108494864 -68479276 - L2 LINE L2 -219 3053 2951 203 365 100 52 chrX 108494972 108495353 -68478787 - L2 LINE L2 -512 2802 2404 931 291 93 54 chrX 108495516 108496618 -68477522 + L1MEd LINE L1 6 1150 -4969 433 338 40 18 chrX 108496681 108496906 -68477234 - L2 LINE L2 -1143 2171 1942 291 230 68 40 chrX 108496906 108496980 -68477160 - L2 LINE L2 -7 3265 3190 279 0 0 0 chrX 108497734 108497765 -68476375 + (TG)n Simple_repeat Simple_repeat 2 32 0 214 189 0 0 chrX 108497794 108497831 -68476309 - L2 LINE L2 -5 3267 3231 245 182 18 0 chrX 108497888 108497943 -68476197 + (TA)n Simple_repeat Simple_repeat 1 56 0 328 247 24 0 chrX 108497947 108498032 -68476108 + L1MC4 LINE L1 6615 6701 -1341 324 276 11 11 chrX 108497960 108498047 -68476093 - L1MC4 LINE L1 -1339 6703 6617 * 267 189 0 0 chrX 108498049 108498102 -68476038 + (TA)n Simple_repeat Simple_repeat 1 53 0 295 258 0 0 chrX 108498102 108498191 -68475949 - L1MC4 LINE L1 -1339 6703 6615 253 303 0 0 chrX 108498141 108498230 -68475910 + L1MC4 LINE L1 6615 6703 -1339 * 281 284 0 0 chrX 108498260 108498348 -68475792 - L1MC4 LINE L1 -1339 6703 6616 233 318 0 0 chrX 108498352 108498440 -68475700 - L1MC4 LINE L1 -1339 6703 6616 260 247 0 12 chrX 108498441 108498522 -68475618 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 308 230 0 100 chrX 108498525 108498625 -68475515 - L1MC4 LINE L1 -1339 6703 6614 225 278 22 22 chrX 108498653 108498743 -68475397 - L1MC4 LINE L1 -1339 6703 6614 319 287 23 0 chrX 108498744 108498831 -68475309 - L1MC4 LINE L1 -1340 6702 6614 311 238 71 0 chrX 108498759 108498843 -68475297 + L1MC4 LINE L1 6614 6703 -1339 * 351 256 23 0 chrX 108498854 108498940 -68475200 - L1MC4 LINE L1 -1340 6702 6615 326 283 0 22 chrX 108498865 108498957 -68475183 + L1MC4 LINE L1 6614 6703 -1339 * 426 263 0 0 chrX 108498958 108499091 -68475049 + (TA)n Simple_repeat Simple_repeat 2 134 0 325 255 0 43 chrX 108499093 108499187 -68474953 + L1MC4 LINE L1 6614 6703 -1339 626 234 0 12 chrX 108499189 108499360 -68474780 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 252 256 23 0 chrX 108499363 108499449 -68474691 + L1MC4 LINE L1 6616 6703 -1339 596 236 0 9 chrX 108499462 108499681 -68474459 + (TATATG)n Simple_repeat Simple_repeat 1 216 0 241 83 42 0 chrX 108499683 108499731 -68474409 + L1MC4 LINE L1 6654 6703 -1339 612 187 28 0 chrX 108499734 108499960 -68474180 + (TA)n Simple_repeat Simple_repeat 1 232 0 506 250 283 30 chrX 108500235 108500603 -68473537 - MLT1J LTR MaLR -50 461 1 231 278 56 46 chrX 108501135 108501243 -68472897 + L2 LINE L2 3163 3271 -1 1105 212 67 69 chrX 108501343 108501806 -68472334 - LTR16B LTR ERVL 0 464 3 510 17 0 0 chrX 108502110 108502169 -68471971 + (CA)n Simple_repeat Simple_repeat 1 59 0 183 42 0 0 chrX 108502170 108502194 -68471946 + (GA)n Simple_repeat Simple_repeat 1 24 0 903 176 0 0 chrX 108502196 108502338 -68471802 - FRAM SINE Alu -30 146 5 229 367 73 18 chrX 108502471 108502580 -68471560 - MIR SINE MIR -137 125 11 205 250 0 0 chrX 108502726 108502770 -68471370 + (CGAA)n Simple_repeat Simple_repeat 2 45 0 321 280 40 0 chrX 108503451 108503526 -68470614 + MIR3 SINE MIR 83 160 -48 205 328 16 0 chrX 108503543 108503604 -68470536 + L2 LINE L2 3210 3271 -1 6584 85 0 0 chrX 108503885 108504966 -68469174 - L1PA10 LINE L1 -5 6163 5076 276 30 0 0 chrX 108505138 108505171 -68468969 + (CA)n Simple_repeat Simple_repeat 1 33 0 522 191 96 55 chrX 108505174 108505446 -68468694 - L1MC5 LINE L1 -202 7759 7477 759 22 0 0 chrX 108505475 108505564 -68468576 + (TTTC)n Simple_repeat Simple_repeat 1 89 0 1340 179 0 52 chrX 108505565 108505833 -68468307 - AluJo SINE Alu -33 279 26 1397 211 0 0 chrX 108506022 108506259 -68467881 + AluJb SINE Alu 1 237 -75 223 49 49 0 chrX 108507006 108507047 -68467093 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2036 69 0 0 chrX 108507049 108507296 -68466844 - AluY SINE Alu -32 279 33 437 188 103 32 chrX 108507419 108507578 -68466562 + MIR SINE MIR 50 217 -45 2241 107 7 0 chrX 108508320 108508630 -68465510 + AluSx SINE Alu 1 312 0 2204 91 30 7 chrX 108508762 108509060 -68465080 + AluSx SINE Alu 1 305 -7 235 263 221 0 chrX 108509340 108509435 -68464705 - MIR3 SINE MIR -21 187 72 324 266 25 0 chrX 108509806 108509885 -68464255 + Cheshire DNA MER1_type 2 82 -2338 1242 134 45 5 chrX 108509894 108510117 -68464023 - L1MB2 LINE L1 -2 6169 5938 1757 164 3 3 chrX 108510300 108510587 -68463553 - AluJo SINE Alu -25 287 1 4166 179 19 23 chrX 108510587 108511680 -68462460 - L1MB2 LINE L1 -41 6130 5041 955 155 10 21 chrX 108511683 108511739 -68462401 + Cheshire DNA MER1_type 70 125 -216 2085 83 11 0 chrX 108511739 108512003 -68462137 + AluSc SINE Alu 38 304 -5 955 155 10 21 chrX 108512003 108512139 -68462001 + Cheshire DNA MER1_type 125 260 -81 3876 148 32 6 chrX 108512139 108512862 -68461278 + Tigger2 DNA MER2_type 1 742 -1976 1269 88 0 20 chrX 108512913 108513117 -68461023 + Tigger2 DNA MER2_type 2460 2659 -59 2144 125 0 0 chrX 108513117 108513412 -68460728 + AluSx SINE Alu 1 295 -17 1746 177 102 26 chrX 108513423 108513558 -68460582 + Cheshire DNA MER1_type 259 382 -2038 619 168 34 25 chrX 108513558 108513677 -68460463 - FLAM_A SINE Alu -12 121 2 1746 177 102 26 chrX 108513677 108514318 -68459822 + Cheshire DNA MER1_type 382 1555 -865 718 160 0 0 chrX 108514308 108514433 -68459707 + Cheshire DNA MER1_type 2295 2419 -1 * 2334 105 7 0 chrX 108515861 108516165 -68457975 - AluSg SINE Alu -4 306 1 21 36 0 0 chrX 108516279 108516307 -68457833 + AT_rich Low_complexity Low_complexity 1 28 0 854 138 8 0 chrX 108516390 108516505 -68457635 + AluJb SINE Alu 1 119 -193 486 0 0 0 chrX 108516505 108516559 -68457581 + (CA)n Simple_repeat Simple_repeat 1 54 0 1851 203 41 49 chrX 108516879 108517386 -68456754 - MLT1D LTR MaLR -2 503 1 882 214 17 0 chrX 108518293 108518466 -68455674 + MER5B DNA MER1_type 3 178 0 1731 105 12 12 chrX 108518747 108519004 -68455136 + L1PA10 LINE L1 5907 6163 -5 831 265 8 63 chrX 108519608 108519876 -68454264 - MIR SINE MIR -4 258 6 6992 88 9 17 chrX 108520117 108521213 -68452927 - L1MA2 LINE L1 -1 6303 5216 1950 164 16 16 chrX 108521740 108522105 -68452035 - MLT1A1 LTR MaLR 0 365 1 786 248 63 13 chrX 108522170 108522408 -68451732 + MIR SINE MIR 6 255 -7 241 245 0 0 chrX 108522557 108522610 -68451530 + MIR SINE MIR 210 262 0 290 236 160 35 chrX 108523003 108523147 -68450993 - MIR SINE MIR -15 247 86 5156 220 38 43 chrX 108525481 108527266 -68446874 - L1M4 LINE L1 -2094 4052 2276 1664 180 16 29 chrX 108527290 108527596 -68446544 - AluJo SINE Alu -7 305 4 1078 128 27 37 chrX 108527889 108528107 -68446033 - AluJo SINE Alu 0 314 99 190 194 0 0 chrX 108529119 108529155 -68444985 + MIR3 SINE MIR 167 202 -6 567 29 0 0 chrX 108529296 108529365 -68444775 + (TG)n Simple_repeat Simple_repeat 2 70 0 458 293 14 60 chrX 108531093 108531212 -68442928 - MIR SINE MIR -7 255 149 1610 142 97 0 chrX 108531212 108531459 -68442681 + AluSx SINE Alu 11 281 -31 458 293 14 60 chrX 108531459 108531554 -68442586 - MIR SINE MIR -113 149 51 441 331 69 0 chrX 108532045 108532220 -68441920 + MIR SINE MIR 58 244 -18 409 338 7 7 chrX 108532264 108532403 -68441737 + MIR SINE MIR 2 140 -122 2091 106 3 3 chrX 108532479 108532803 -68441337 + AluSq SINE Alu 1 324 0 323 261 29 65 chrX 108533303 108533441 -68440699 + MIR SINE MIR 88 220 -42 559 242 159 26 chrX 108534067 108534294 -68439846 + MIR SINE MIR 3 259 -3 210 118 0 0 chrX 108534308 108534342 -68439798 + (TTA)n Simple_repeat Simple_repeat 3 36 0 334 215 0 0 chrX 108534586 108534651 -68439489 + MIR3 SINE MIR 144 208 0 221 277 0 145 chrX 108536345 108536373 -68437767 - MIR3 SINE MIR -133 75 45 2061 130 0 0 chrX 108536373 108536666 -68437474 - AluJb SINE Alu -19 293 1 221 277 0 145 chrX 108536666 108536720 -68437420 - MIR3 SINE MIR -163 45 5 1078 177 89 123 chrX 108536768 108537174 -68436966 + MSTD LTR MaLR 3 394 -2 231 267 62 103 chrX 108537674 108537820 -68436320 + L2 LINE L2 2544 2683 -631 694 287 43 54 chrX 108537907 108538186 -68435954 + L3 LINE CR1 1270 1545 -32 377 256 54 16 chrX 108538187 108538315 -68435825 - MIR SINE MIR -1 261 129 779 289 65 13 chrX 108538315 108538547 -68435593 + MIR SINE MIR 4 247 -15 5003 52 35 32 chrX 108540095 108540781 -68433359 - LTR12 LTR ERV1 0 688 1 2314 98 0 3 chrX 108541343 108541649 -68432491 - AluSg SINE Alu -4 306 2 189 311 107 19 chrX 108542140 108542243 -68431897 - L2 LINE L2 -208 3064 2953 312 250 44 0 chrX 108542606 108542674 -68431466 + MER91A DNA MER1_type 126 196 0 2866 64 8 11 chrX 108542897 108543271 -68430869 - THE1C LTR MaLR 0 375 3 347 276 186 14 chrX 108543466 108543611 -68430529 + MIR3 SINE MIR 34 203 -5 198 337 10 82 chrX 108544375 108544473 -68429667 - MIR SINE MIR -84 124 34 730 307 19 5 chrX 108546734 108546946 -68427194 - MIR SINE MIR -17 245 31 320 319 14 89 chrX 108547508 108547721 -68426419 + L2 LINE L2 3076 3272 0 239 368 25 25 chrX 108547728 108547867 -68426273 - MIR SINE MIR -71 137 20 21 57 0 0 chrX 108548349 108548384 -68425756 + AT_rich Low_complexity Low_complexity 1 35 0 234 359 113 25 chrX 108548400 108548559 -68425581 - L2 LINE L2 -12 3260 3088 25 31 0 0 chrX 108548610 108548642 -68425498 + AT_rich Low_complexity Low_complexity 1 32 0 221 373 24 71 chrX 108548674 108548929 -68425211 - L2 LINE L2 -607 2707 2465 252 329 13 0 chrX 108549239 108549318 -68424822 + MIR SINE MIR 52 131 -77 2252 132 0 0 chrX 108549569 108549872 -68424268 - AluSq SINE Alu -10 303 1 242 68 45 0 chrX 108549882 108549926 -68424214 + T-rich Low_complexity Low_complexity 3 48 0 204 407 50 14 chrX 108550300 108550440 -68423700 - L2 LINE L2 -9 3263 3119 2161 117 0 0 chrX 108550542 108550832 -68423308 - AluSx SINE Alu -22 290 1 191 236 14 0 chrX 108552291 108552363 -68421777 + CT-rich Low_complexity Low_complexity 1 73 0 954 217 20 5 chrX 108553082 108553280 -68420860 - MIR SINE MIR -32 230 30 531 301 40 17 chrX 108553684 108553857 -68420283 + MER5A DNA MER1_type 10 186 -3 486 280 53 8 chrX 108553870 108554002 -68420138 + MIR3 SINE MIR 10 147 -61 2793 91 30 100 chrX 108554606 108555343 -68418797 + SVA Other Other 393 868 -520 6441 66 5 64 chrX 108555409 108556423 -68417717 + SVA Other Other 433 1386 0 2207 166 0 3 chrX 108556506 108556856 -68417284 - MLT1A1 LTR MaLR -16 349 1 208 208 0 38 chrX 108557967 108558020 -68416120 + L3 LINE CR1 1371 1421 -156 795 271 70 13 chrX 108558048 108558277 -68415863 + MIR SINE MIR 6 247 -15 836 235 11 11 chrX 108558337 108558524 -68415616 + MIR SINE MIR 1 187 -75 882 160 14 14 chrX 108558542 108558686 -68415454 + FRAM SINE Alu 1 141 -35 286 230 0 40 chrX 108558709 108558783 -68415357 + MIR SINE MIR 180 250 -12 902 92 0 63 chrX 108560223 108560365 -68413775 - FLAM_C SINE Alu -2 141 9 2021 151 0 7 chrX 108560793 108561098 -68413042 + AluJb SINE Alu 1 303 -9 501 258 61 50 chrX 108562573 108562771 -68411369 - MIR SINE MIR -54 208 9 1911 170 0 7 chrX 108563392 108563686 -68410454 - AluJo SINE Alu -20 292 1 296 245 71 10 chrX 108564092 108564190 -68409950 - MIR3 SINE MIR -51 157 54 199 302 0 0 chrX 108564334 108564377 -68409763 - MIR SINE MIR -200 62 20 900 195 0 0 chrX 108564413 108564582 -68409558 - AluJb SINE Alu -3 309 141 248 254 17 0 chrX 108565226 108565285 -68408855 - L2 LINE L2 -5 3308 3249 315 269 91 96 chrX 108565302 108565499 -68408641 + L2 LINE L2 2988 3183 -89 322 314 88 59 chrX 108565654 108565893 -68408247 - L2 LINE L2 -218 3054 2809 688 185 25 60 chrX 108566060 108566154 -68407986 - L1MC5 LINE L1 -50 7911 7815 1089 236 108 75 chrX 108566154 108566730 -68407410 - MLT1G1 LTR MaLR 0 595 1 688 185 25 60 chrX 108566730 108566835 -68407305 - L1MC5 LINE L1 -146 7815 7719 203 258 30 15 chrX 108566865 108566931 -68407209 - MIR SINE MIR -119 143 77 1068 144 43 0 chrX 108566932 108567119 -68407021 + AluJb SINE Alu 114 308 -4 1029 198 0 0 chrX 108567237 108567404 -68406736 - FAM SINE Alu -8 167 1 355 336 73 7 chrX 108567407 108567541 -68406599 - L2 LINE L2 -567 2747 2605 392 257 300 7 chrX 108567541 108567681 -68406459 - MER5A DNA MER1_type 0 189 9 206 368 32 21 chrX 108567818 108567913 -68406227 - MIR SINE MIR -83 125 30 2053 129 10 0 chrX 108568077 108568386 -68405754 - AluJb SINE Alu 0 312 1 256 329 53 41 chrX 108568556 108568726 -68405414 - L2 LINE L2 -195 3077 2906 1181 158 90 22 chrX 108569092 108569314 -68404826 - L1M4 LINE L1 -568 5610 5374 2477 177 24 13 chrX 108569364 108569827 -68404313 + L1MB5 LINE L1 5602 6069 -105 272 83 0 0 chrX 108569831 108569867 -68404273 + L1MB5 LINE L1 6108 6143 -31 300 227 151 42 chrX 108570128 108570247 -68403893 - MIR SINE MIR -112 150 19 359 293 20 0 chrX 108570563 108570662 -68403478 - MIR3 SINE MIR -32 176 76 37 62 0 0 chrX 108570785 108570850 -68403290 + AT_rich Low_complexity Low_complexity 1 65 0 1031 169 11 0 chrX 108570856 108571040 -68403100 - AluJb SINE Alu 0 312 127 22 35 0 0 chrX 108571040 108571069 -68403071 + AT_rich Low_complexity Low_complexity 1 29 0 302 335 68 25 chrX 108571204 108571365 -68402775 + MIR3 SINE MIR 30 197 -11 2205 118 0 0 chrX 108571373 108571678 -68402462 + AluSx SINE Alu 1 305 -7 654 140 28 0 chrX 108572291 108572398 -68401742 + FLAM_C SINE Alu 2 111 -32 2366 75 3 0 chrX 108572690 108572983 -68401157 + AluSg SINE Alu 2 295 -15 1367 261 37 77 chrX 108573007 108573358 -68400782 - L2 LINE L2 -5 3308 2983 3407 93 48 72 chrX 108573358 108573898 -68400242 + MER1A DNA MER1_type 1 527 0 1367 261 37 77 chrX 108573898 108574097 -68400043 - L2 LINE L2 -330 2983 2778 211 213 164 33 chrX 108574232 108574293 -68399847 + MIR SINE MIR 16 84 -178 934 189 57 0 chrX 108574634 108574793 -68399347 - MER5A DNA MER1_type -7 182 15 1743 156 43 7 chrX 108575064 108575365 -68398775 - AluJb SINE Alu 0 312 1 593 313 61 22 chrX 108575439 108575752 -68398388 + L1MB7 LINE L1 5494 5817 -348 411 21 0 0 chrX 108575783 108575831 -68398309 + (TG)n Simple_repeat Simple_repeat 1 48 0 263 79 0 0 chrX 108575956 108575994 -68398146 + Alu SINE Alu 257 294 -8 * 799 177 15 0 chrX 108575991 108576121 -68398019 - MER2 DNA MER2_type -210 135 4 291 324 37 9 chrX 108576555 108576663 -68397477 + MIR3 SINE MIR 67 177 -31 1251 141 5 24 chrX 108576903 108577116 -68397024 - AluJo SINE Alu -101 211 3 997 192 31 48 chrX 108577209 108577438 -68396702 + L1MB7 LINE L1 5951 6175 -9 1402 178 63 33 chrX 108577634 108577937 -68396203 - AluJb SINE Alu 0 312 1 1922 196 119 25 chrX 108578280 108578573 -68395567 + MLT1E2 LTR MaLR 141 405 -221 4013 101 35 0 chrX 108578573 108579108 -68395032 + MER41A LTR ERV1 1 554 0 1922 196 119 25 chrX 108579108 108579222 -68394918 + MLT1E2 LTR MaLR 405 507 -119 1880 139 14 4 chrX 108579222 108579526 -68394614 - AluSx SINE Alu 0 307 1 1922 196 119 25 chrX 108579526 108579560 -68394580 + MLT1E2 LTR MaLR 507 626 0 1863 107 8 8 chrX 108579600 108579862 -68394278 - L1PA15 LINE L1 -77 6088 5827 1132 154 0 94 chrX 108579864 108579971 -68394169 + Tigger1 DNA MER2_type 2207 2282 -136 4131 126 14 5 chrX 108579971 108580535 -68393605 - MER61E LTR ERV1 0 569 1 1132 154 0 94 chrX 108580535 108580661 -68393479 + Tigger1 DNA MER2_type 2282 2418 0 693 145 26 8 chrX 108580661 108580776 -68393364 + MER34C LTR ERV1 469 585 0 2092 113 27 3 chrX 108581047 108581347 -68392793 + AluSc SINE Alu 1 307 -2 383 281 23 23 chrX 108581752 108581880 -68392260 - MIR3 SINE MIR -15 193 66 5471 110 11 0 chrX 108582103 108582857 -68391283 - L1MA1 LINE L1 0 6302 5541 863 128 75 0 chrX 108582857 108582990 -68391150 + MER57B LTR ERV1 1 143 -291 1993 173 10 15 chrX 108582990 108583394 -68390746 - L1MA1 LINE L1 -1616 4530 4129 * 2280 174 28 0 chrX 108583382 108583806 -68390334 + L1MB2 LINE L1 4072 4507 -1639 2602 96 2 103 chrX 108583808 108584227 -68389913 + MER51B LTR ERV1 1 377 0 1555 154 23 19 chrX 108584230 108584496 -68389644 + MER51B-int LTR ERV1 6 272 -7544 5046 136 12 20 chrX 108584504 108585316 -68388824 + MER51B-int LTR ERV1 417 1222 -6594 658 56 67 0 chrX 108585325 108585414 -68388726 + MER51B-int LTR ERV1 1509 1603 -6213 521 165 21 10 chrX 108585414 108585511 -68388629 + MER4A LTR ERV1 1 98 -566 849 127 44 22 chrX 108585511 108585719 -68388421 + MER4A LTR ERV1 261 531 -133 13991 71 56 9 chrX 108585728 108588553 -68385587 + MER51B-int LTR ERV1 1806 4965 -2572 5606 119 72 41 chrX 108588553 108588571 -68385569 + MER51B-int LTR ERV1 6334 6350 -1466 2433 79 0 7 chrX 108588571 108588876 -68385264 - AluY SINE Alu -8 303 1 5606 119 72 41 chrX 108588876 108590125 -68384015 + MER51B-int LTR ERV1 6350 7816 0 2637 88 25 80 chrX 108590126 108590525 -68383615 + MER51B LTR ERV1 1 377 0 1251 211 14 14 chrX 108590528 108590817 -68383323 + L1MB2 LINE L1 4509 4797 -1349 4637 186 43 5 chrX 108591846 108593197 -68380943 + L1MB2 LINE L1 4762 6164 -7 412 318 50 25 chrX 108593231 108593429 -68380711 - MIR3 SINE MIR -3 205 3 2464 74 0 0 chrX 108594968 108595265 -68378875 - AluSx SINE Alu -15 297 1 1246 172 0 18 chrX 108598201 108598422 -68375718 + AluJo SINE Alu 85 301 -11 209 182 0 0 chrX 108598837 108598870 -68375270 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 25 0 0 0 chrX 108600607 108600632 -68373508 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 108601056 108601084 -68373056 + AT_rich Low_complexity Low_complexity 1 28 0 12706 124 23 12 chrX 108601921 108602419 -68371721 + L1M1 LINE L1 15 506 -7059 1515 104 50 5 chrX 108602419 108602639 -68371501 - MER30 DNA MER1_type 0 230 1 12706 124 23 12 chrX 108602639 108604565 -68369575 + L1M1 LINE L1 506 2410 -5155 1996 115 7 0 chrX 108604565 108604835 -68369305 + AluSx SINE Alu 1 272 -40 12706 124 23 12 chrX 108604835 108604866 -68369274 + L1M1 LINE L1 2410 2439 -5126 1818 108 8 20 chrX 108604866 108605117 -68369023 + AluSg SINE Alu 47 294 -16 12706 124 23 12 chrX 108605117 108605719 -68368421 + L1M1 LINE L1 2439 3206 -4359 1607 50 58 54 chrX 108605719 108605977 -68368163 + L1MA1 LINE L1 6041 6299 -3 12706 124 23 12 chrX 108605977 108606015 -68368125 + L1M1 LINE L1 3206 3242 -4323 252 282 103 0 chrX 108606954 108607032 -68367108 + L2 LINE L2 3138 3223 -49 1996 125 13 16 chrX 108607554 108607867 -68366273 + AluJb SINE Alu 1 312 0 554 234 114 12 chrX 108608450 108608617 -68365523 - MIR SINE MIR -4 258 75 753 186 74 141 chrX 108608843 108608949 -68365191 + MER96B DNA MER1_type 1 113 -304 2306 100 0 10 chrX 108608949 108609260 -68364880 - AluSx SINE Alu -1 311 4 753 186 74 141 chrX 108609260 108609354 -68364786 + MER96B DNA MER1_type 113 212 -205 2087 130 7 3 chrX 108609354 108609653 -68364487 + AluJo SINE Alu 1 300 -12 753 186 74 141 chrX 108609653 108609898 -68364242 + MER96B DNA MER1_type 212 417 0 1423 208 28 22 chrX 108610138 108610538 -68363602 + L1M4 LINE L1 3982 4383 -1763 1107 203 79 0 chrX 108610550 108610841 -68363299 + L1M4 LINE L1 4880 5193 -953 590 125 0 10 chrX 108610846 108610942 -68363198 + AluS SINE Alu 1 95 -217 2160 128 0 0 chrX 108610996 108611292 -68362848 - AluSx SINE Alu -16 296 1 1637 183 3 14 chrX 108611533 108611823 -68362317 + AluJo SINE Alu 1 287 -25 1377 165 64 0 chrX 108611833 108611948 -68362192 + AluSx SINE Alu 1 107 -205 233 0 62 0 chrX 108611948 108611980 -68362160 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1377 165 64 0 chrX 108611980 108612130 -68362010 + AluSx SINE Alu 107 283 -29 1668 130 24 0 chrX 108613680 108613934 -68360206 - AluSx SINE Alu -3 309 50 444 172 0 0 chrX 108613965 108614052 -68360088 + CT-rich Low_complexity Low_complexity 2 88 0 794 169 11 11 chrX 108614119 108614297 -68359843 + CT-rich Low_complexity Low_complexity 3 180 0 404 207 37 7 chrX 108614360 108614495 -68359645 + CT-rich Low_complexity Low_complexity 4 142 0 840 132 0 8 chrX 108614545 108614666 -68359474 - FLAM_C SINE Alu -23 120 1 217 209 269 0 chrX 108615050 108615117 -68359023 - L2 LINE L2 0 3272 3188 260 358 69 12 chrX 108615447 108615620 -68358520 - L2 LINE L2 -1230 2084 1902 846 280 42 0 chrX 108615681 108615917 -68358223 - MIR SINE MIR -5 257 12 2701 31 9 0 chrX 108615943 108616267 -68357873 - L1PA4 LINE L1 -1 6154 5828 2047 130 3 0 chrX 108616367 108616659 -68357481 + AluSx SINE Alu 1 293 -19 23 0 0 0 chrX 108616659 108616682 -68357458 + AT_rich Low_complexity Low_complexity 1 23 0 210 162 0 0 chrX 108616936 108616973 -68357167 + L2 LINE L2 2677 2713 -601 1702 152 3 25 chrX 108616975 108617278 -68356862 + AluJb SINE Alu 6 302 0 430 237 175 104 chrX 108617278 108617586 -68356554 + LTR67 LTR ERVL 218 547 -10 1002 260 92 44 chrX 108617632 108618021 -68356119 + L3 LINE CR1 1073 1480 -97 828 118 7 28 chrX 108618289 108618433 -68355707 - AluJo SINE Alu -171 141 1 907 211 0 0 chrX 108618478 108618639 -68355501 - AluSx SINE Alu -151 161 1 2278 105 0 0 chrX 108618944 108619239 -68354901 + AluSx SINE Alu 1 295 -17 1359 126 4 0 chrX 108619330 108619560 -68354580 + L1MA4 LINE L1 6069 6299 -1 541 254 203 6 chrX 108620358 108620545 -68353595 + MIR SINE MIR 35 255 -7 1307 248 57 28 chrX 108620624 108621436 -68352704 - L1ME LINE L1 -454 5708 4878 1120 224 70 10 chrX 108621642 108621954 -68352186 + MLT1C LTR MaLR 6 336 -131 1155 67 0 0 chrX 108621955 108622104 -68352036 + MER107 DNA MER1_type 1 149 -48 449 153 12 0 chrX 108622106 108622191 -68351949 - MER31A LTR ERV1 -103 382 297 289 371 0 8 chrX 108622191 108622315 -68351825 - MIR SINE MIR -114 148 26 279 364 56 31 chrX 108622419 108622581 -68351559 + L2 LINE L2 2892 3057 -215 267 284 16 39 chrX 108622681 108622808 -68351332 + L2 LINE L2 3115 3238 -75 1620 155 25 32 chrX 108622917 108623218 -68350922 - AluJb SINE Alu 0 308 10 585 246 0 0 chrX 108623255 108623369 -68350771 - MIR SINE MIR -101 161 48 307 346 23 60 chrX 108623419 108623552 -68350588 + L2 LINE L2 3144 3271 -1 787 199 7 0 chrX 108623675 108623826 -68350314 + FRAM SINE Alu 1 40 0 763 220 0 0 chrX 108623909 108624100 -68350040 - L1ME LINE L1 -2121 4025 3835 1514 184 55 0 chrX 108624392 108624647 -68349493 - AluJo SINE Alu -43 269 1 1082 189 8 8 chrX 108625074 108625333 -68348807 + L1MA4 LINE L1 6037 6295 -5 297 172 0 0 chrX 108625408 108625466 -68348674 + L1MA8 LINE L1 6231 6288 -3 1956 110 0 11 chrX 108625689 108625821 -68348319 - AluSx SINE Alu -47 265 136 2140 124 0 0 chrX 108625821 108626128 -68348012 - AluSc SINE Alu -2 307 1 1956 110 0 11 chrX 108626128 108626258 -68347882 - AluSx SINE Alu -176 136 6 2308 132 60 38 chrX 108626321 108626768 -68347372 + MSTB2 LTR MaLR 1 457 0 2404 169 197 18 chrX 108626926 108627495 -68346645 - LTR51 LTR ERV1 0 671 1 438 200 9 0 chrX 108627665 108627775 -68346365 + L1M4 LINE L1 2436 2546 -3600 245 207 0 0 chrX 108627791 108627849 -68346291 + L1MB8 LINE L1 6115 6172 -6 1081 184 9 33 chrX 108627852 108628064 -68346076 - AluJo SINE Alu -4 308 102 856 225 108 9 chrX 108628064 108628277 -68345863 - MSTB LTR MaLR -192 234 1 823 201 0 7 chrX 108628278 108628427 -68345713 - AluJo SINE Alu -162 150 3 343 309 54 7 chrX 108628444 108628593 -68345547 - L1M4 LINE L1 -758 5388 5233 571 88 18 114 chrX 108629124 108629238 -68344902 - L1MB2 LINE L1 -7 6164 6062 679 104 12 4 chrX 108629502 108629613 -68344527 + L1MA2 LINE L1 6164 6280 -23 338 347 23 34 chrX 108630605 108630781 -68343359 - MIR3 SINE MIR -1 207 34 221 136 0 23 chrX 108631349 108631393 -68342747 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 1409 254 80 38 chrX 108633651 108634479 -68339661 - L2 LINE L2 0 3313 2446 278 26 26 0 chrX 108636169 108636208 -68337932 + (TA)n Simple_repeat Simple_repeat 2 41 0 23 110 0 0 chrX 108637133 108637233 -68336907 + AT_rich Low_complexity Low_complexity 1 100 0 861 130 7 0 chrX 108637876 108638022 -68336118 - L1MA8 LINE L1 -10 6281 6135 1838 158 10 20 chrX 108638185 108638482 -68335658 - AluJo SINE Alu -18 294 1 914 336 91 31 chrX 108639035 108639589 -68334551 + L2 LINE L2 2131 2650 -622 2262 112 0 0 chrX 108639589 108639901 -68334239 - AluSx SINE Alu 0 312 1 914 336 91 31 chrX 108639901 108640405 -68333735 + L2 LINE L2 2650 3271 -1 563 288 68 77 chrX 108640498 108640833 -68333307 - L3 LINE CR1 -21 1556 1225 375 353 0 8 chrX 108640833 108640952 -68333188 - MER5A DNA MER1_type 0 189 72 1834 163 10 23 chrX 108640957 108641071 -68333069 - AluJo SINE Alu -9 303 189 1556 227 119 70 chrX 108641071 108641858 -68332282 + LTR1B LTR ERV1 1 826 0 1834 163 10 23 chrX 108641858 108642049 -68332091 - AluJo SINE Alu -123 189 2 272 369 41 26 chrX 108642209 108642404 -68331736 - L3 LINE CR1 -472 1105 908 271 262 18 110 chrX 108642484 108642586 -68331554 - L3 LINE CR1 -220 1357 1273 2317 40 22 4 chrX 108642586 108642910 -68331230 + AluY SINE Alu 1 329 0 271 262 18 110 chrX 108642910 108642970 -68331170 - L3 LINE CR1 -304 1273 1209 400 356 97 27 chrX 108644198 108644668 -68329472 - L2 LINE L2 -192 3080 2538 190 359 47 0 chrX 108645625 108645731 -68328409 + L2 LINE L2 2494 2604 -710 216 319 197 11 chrX 108645867 108646055 -68328085 + L2 LINE L2 2836 3058 -214 2235 115 0 3 chrX 108646382 108646678 -68327462 - AluSx SINE Alu -17 295 1 25 31 0 0 chrX 108646730 108646762 -68327378 + AT_rich Low_complexity Low_complexity 1 32 0 724 267 7 44 chrX 108646828 108647098 -68327042 - L1ME1 LINE L1 -2 6164 5905 4255 208 2 9 chrX 108847110 108848020 -68126120 - L1 LINE L1 -1699 4447 3544 287 290 32 11 chrX 108848441 108848534 -68125606 - L2 LINE L2 -36 3277 3183 406 326 93 5 chrX 108848728 108848943 -68125197 - MIR SINE MIR 0 262 29 598 227 21 46 chrX 108848970 108849070 -68125070 + L1ME LINE L1 5348 5442 -720 894 235 30 109 chrX 108849070 108849466 -68124674 + MLT1A1 LTR MaLR 1 365 0 598 227 21 46 chrX 108849466 108849559 -68124581 + L1ME LINE L1 5442 5536 -626 11843 180 19 7 chrX 108849588 108853142 -68120998 + L1MA1 LINE L1 2708 6302 0 22 35 0 0 chrX 108853142 108853171 -68120969 + AT_rich Low_complexity Low_complexity 1 29 0 699 283 54 10 chrX 108853230 108853527 -68120613 - L1ME4a LINE L1 -194 5927 5618 26 0 0 0 chrX 108853598 108853624 -68120516 + AT_rich Low_complexity Low_complexity 1 26 0 1484 198 21 26 chrX 108853907 108854286 -68119854 - L1MA9 LINE L1 0 6312 5936 28 48 0 0 chrX 108854383 108854425 -68119715 + AT_rich Low_complexity Low_complexity 1 42 0 6434 174 16 2 chrX 108854425 108856405 -68117735 - L1MA2 LINE L1 -3 7720 5711 11762 193 41 13 chrX 108856425 108859469 -68114671 - L1MA2 LINE L1 -3181 4384 1260 1651 226 0 0 chrX 108859467 108859812 -68114328 + L1PB1 LINE L1 3970 4314 -1832 * 5591 61 0 3 chrX 108859813 108860546 -68113594 - L1P LINE L1 -810 5336 4606 3459 54 0 2 chrX 108860546 108860971 -68113169 - L1P2 LINE L1 -385 5769 5346 3494 69 0 0 chrX 108860974 108861426 -68112714 + L1PA5 LINE L1 5700 6151 -3 5130 170 13 3 chrX 108861427 108861517 -68112623 + L1PB1 LINE L1 4307 4395 -1756 228 35 0 0 chrX 108861517 108861546 -68112594 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 5130 170 13 3 chrX 108861546 108863141 -68110999 + L1PB1 LINE L1 4395 6011 -140 2163 121 36 3 chrX 108863148 108863478 -68110662 + MER9 LTR ERVK 34 374 -137 478 114 0 0 chrX 108863579 108863649 -68110491 - L1PB1 LINE L1 -288 5863 5794 960 152 0 0 chrX 108863650 108863815 -68110325 + (TA)n Simple_repeat Simple_repeat 2 166 0 3138 98 20 0 chrX 108863815 108864273 -68109867 + L1P5 LINE L1 5331 5797 -354 572 175 0 59 chrX 108864294 108864561 -68109579 + (TA)n Simple_repeat Simple_repeat 1 251 0 255 289 0 22 chrX 108864563 108864653 -68109487 + L1MC4 LINE L1 6616 6703 -1339 743 235 6 6 chrX 108864655 108864986 -68109154 + (TATATG)n Simple_repeat Simple_repeat 1 331 0 5943 213 18 4 chrX 108865028 108866384 -68107756 - L1 LINE L1 -2399 3747 2374 360 200 0 0 chrX 108866484 108866559 -68107581 + (TA)n Simple_repeat Simple_repeat 1 75 0 671 130 35 0 chrX 108866564 108866679 -68107461 + L1PB1 LINE L1 5783 5901 -250 254 255 0 0 chrX 108866725 108866776 -68107364 + (CATA)n Simple_repeat Simple_repeat 3 53 0 270 250 23 0 chrX 108866776 108866864 -68107276 - L1MC4 LINE L1 -1339 6703 6614 227 185 0 19 chrX 108866866 108866920 -68107220 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 716 148 31 0 chrX 108866921 108867049 -68107091 + L1PB1 LINE L1 5783 5914 -237 785 206 12 24 chrX 108868157 108868327 -68105813 + MER5B DNA MER1_type 5 172 -6 462 277 16 76 chrX 108868333 108868517 -68105623 - MIR SINE MIR -56 206 34 1187 95 6 0 chrX 108868812 108868981 -68105159 - L1PB1 LINE L1 0 6151 5982 7273 143 16 2 chrX 108868983 108870090 -68104050 + THE1B-int LTR MaLR 458 1580 0 579 111 0 0 chrX 108870090 108870171 -68103969 + THE1B LTR MaLR 1 81 -283 308 161 0 16 chrX 108870180 108870242 -68103898 - L1 LINE L1 -3171 4394 4334 5779 170 70 13 chrX 108870247 108871346 -68102794 + L1PB1 LINE L1 2 1163 -5700 8508 170 41 20 chrX 108871354 108874272 -68099868 + L1PB1 LINE L1 1431 4414 -2448 972 103 0 32 chrX 108874272 108874457 -68099683 + (GAA)n Simple_repeat Simple_repeat 1 179 0 8508 170 41 20 chrX 108874457 108874520 -68099620 + L1PB1 LINE L1 4414 4474 -2388 270 0 0 0 chrX 108876847 108876877 -68097263 + (TG)n Simple_repeat Simple_repeat 2 31 0 3248 72 4 20 chrX 108876881 108877336 -68096804 - LTR7 LTR ERV1 -2 448 1 5563 188 95 15 chrX 108878665 108880885 -68093255 + L1PB1 LINE L1 4455 6867 0 28 0 0 0 chrX 108880889 108880917 -68093223 + AT_rich Low_complexity Low_complexity 1 28 0 2734 221 77 21 chrX 108880917 108881580 -68092560 - L1 LINE L1 -3215 4350 3725 2143 125 3 0 chrX 108881580 108881892 -68092248 + AluSq SINE Alu 1 313 0 2734 221 77 21 chrX 108881892 108882032 -68092108 - L1 LINE L1 -3840 3725 3594 207 0 0 0 chrX 108882032 108882055 -68092085 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2734 221 77 21 chrX 108882055 108882174 -68091966 - L1 LINE L1 -3971 3594 3383 1653 208 6 0 chrX 108882153 108882519 -68091621 - L1 LINE L1 -3542 4023 3656 * 6406 156 26 32 chrX 108882514 108884269 -68089871 + L1MA1 LINE L1 4553 6296 -6 657 224 36 46 chrX 108884264 108884568 -68089572 + L1ME3A LINE L1 2895 3195 -2951 * 1782 232 18 42 chrX 108884687 108884739 -68089401 + L1M4 LINE L1 63 115 -6744 1620 196 0 30 chrX 108884739 108885040 -68089100 + AluJb SINE Alu 1 292 -20 1782 232 18 42 chrX 108885040 108885439 -68088701 + L1M4 LINE L1 115 503 -6356 2483 232 42 19 chrX 108885458 108885885 -68088255 + L1M4 LINE L1 5357 5773 -1184 1128 254 0 4 chrX 108885885 108886125 -68088015 - MER8 DNA MER2_type 0 239 1 2483 232 42 19 chrX 108886125 108886525 -68087615 + L1M4 LINE L1 5773 6203 -754 1861 212 66 15 chrX 108886518 108887279 -68086861 + L1M3 LINE L1 4909 5709 -459 * 2708 186 23 11 chrX 108887275 108887882 -68086258 + L1 LINE L1 4693 5306 -840 * 3758 232 27 6 chrX 108887879 108889016 -68085124 + L1MB8 LINE L1 5023 6173 -5 24 53 0 0 chrX 108889040 108889078 -68085062 + AT_rich Low_complexity Low_complexity 1 38 0 236 279 19 63 chrX 108889080 108889238 -68084902 + L1ME3A LINE L1 3337 3487 -2659 358 289 18 0 chrX 108889283 108889397 -68084743 + L1ME3A LINE L1 4696 4811 -1335 1997 215 91 9 chrX 108889397 108889858 -68084282 - MLT1D LTR MaLR -6 499 1 797 275 61 50 chrX 108889871 108890409 -68083731 + L1ME3A LINE L1 4840 5383 -763 * 10028 155 49 21 chrX 108890388 108892392 -68081748 + L1P3 LINE L1 10 2165 -4296 2081 79 86 4 chrX 108892392 108892670 -68081470 - AluY SINE Alu -10 301 1 10028 155 49 21 chrX 108892670 108893111 -68081029 + L1P3 LINE L1 2165 2592 -3869 6794 74 1 3 chrX 108893112 108894815 -68079325 + L1PA8 LINE L1 4457 6156 -16 1519 239 52 58 chrX 108894823 108895413 -68078727 + L1ME3A LINE L1 5668 6254 -231 253 364 11 0 chrX 108895688 108895776 -68078364 + L3 LINE CR1 1447 1535 -42 424 283 59 53 chrX 108895935 108896087 -68078053 + MIR SINE MIR 38 190 -72 359 258 75 20 chrX 108896867 108897217 -68076923 + L1M4 LINE L1 5043 5422 -740 2783 200 15 55 chrX 108897344 108898075 -68076065 - L1MB7 LINE L1 -7 6879 6178 1400 246 18 25 chrX 108898090 108898534 -68075606 - L1M4 LINE L1 -5124 1418 978 9197 214 22 5 chrX 108898535 108899566 -68074574 - L1MB7 LINE L1 -776 6072 5061 5500 116 11 0 chrX 108899566 108900694 -68073446 - L1PA14 LINE L1 -1 6160 5040 9197 214 22 5 chrX 108900694 108901862 -68072278 - L1MB7 LINE L1 -1787 5061 3834 507 151 0 0 chrX 108901862 108901935 -68072205 + AluJ/FRAM SINE Alu 219 291 -21 2577 261 32 6 chrX 108901935 108902594 -68071546 - L1MB7 LINE L1 -5064 1785 1110 2157 102 3 0 chrX 108903869 108904183 -68069957 + AluSx SINE Alu 1 315 0 417 340 51 6 chrX 108904286 108904442 -68069698 - MIR SINE MIR -97 165 3 25 51 0 0 chrX 108904710 108904749 -68069391 + AT_rich Low_complexity Low_complexity 1 39 0 457 217 0 22 chrX 108904996 108905088 -68069052 + MER2 DNA MER2_type 42 131 -214 12826 212 27 35 chrX 108905122 108909503 -68064637 - L1PA15 LINE L1 -6 6159 1827 4170 120 13 7 chrX 108909500 108910185 -68063955 - L1P LINE L1 -2961 3185 2497 * 3559 280 45 17 chrX 108910209 108911668 -68062472 + L1M4c LINE L1 1949 3492 -2890 1696 227 39 28 chrX 108911668 108912126 -68062014 - MLT1C LTR MaLR 0 467 5 3559 280 45 17 chrX 108912126 108912808 -68061332 + L1M4c LINE L1 3492 4154 -2228 783 120 14 42 chrX 108912875 108913017 -68061123 + MLT1C LTR MaLR 34 171 -296 858 274 42 10 chrX 108913023 108913330 -68060810 + L1M4c LINE L1 4195 4511 -1871 8228 87 11 0 chrX 108913330 108914431 -68059709 + L1P2 LINE L1 4 1116 -5030 * 30147 47 2 2 chrX 108914428 108918439 -68055701 + L1P2 LINE L1 1563 5574 -581 7571 27 0 0 chrX 108918539 108919786 -68054354 + L1PA3 LINE L1 4916 6162 0 498 168 134 8 chrX 108919789 108919918 -68054222 + L1MB7 LINE L1 6040 6176 -2 345 64 0 0 chrX 108920300 108920347 -68053793 - L1PA3 LINE L1 -3 6152 6106 252 0 0 0 chrX 108921959 108921987 -68052153 + (TG)n Simple_repeat Simple_repeat 2 29 0 421 318 14 20 chrX 108923920 108924068 -68050072 + MIR SINE MIR 5 151 -111 886 240 16 71 chrX 108924083 108924337 -68049803 - MIR SINE MIR -21 241 2 22 0 0 0 chrX 108927865 108927887 -68046253 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 108929366 108929387 -68044753 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chrX 108929893 108929923 -68044217 + AT_rich Low_complexity Low_complexity 1 30 0 280 268 219 0 chrX 108930306 108930429 -68043711 - MIR SINE MIR -1 261 112 26 0 0 0 chrX 108931689 108931715 -68042425 + AT_rich Low_complexity Low_complexity 1 26 0 1101 232 77 60 chrX 108932737 108933103 -68041037 + MLT1B LTR MaLR 3 374 -16 1806 139 82 6 chrX 108933103 108933433 -68040707 + THE1A LTR MaLR 1 355 0 11472 101 4 1 chrX 108933433 108935007 -68039133 + THE1A-int LTR MaLR 1 1580 0 1950 137 22 52 chrX 108935007 108935373 -68038767 + THE1A LTR MaLR 1 355 0 558 288 22 5 chrX 108935395 108935579 -68038561 + HERVL LTR ERVL 2 188 -5466 7424 267 31 33 chrX 108935607 108938504 -68035636 + L1MB3 LINE L1 14 2898 -3950 6993 39 9 2 chrX 108938504 108939366 -68034774 + L1PA5 LINE L1 5283 6150 -4 7424 267 31 33 chrX 108939366 108940903 -68033237 + L1MB3 LINE L1 2898 4436 -2412 5446 157 23 13 chrX 108940934 108941288 -68032852 - L1PB1 LINE L1 -5 7565 7216 309 26 0 0 chrX 108941288 108941326 -68032814 + (TG)n Simple_repeat Simple_repeat 2 39 0 5446 157 23 13 chrX 108941326 108941617 -68032523 - L1PB1 LINE L1 -354 7216 6930 340 30 76 0 chrX 108941617 108941683 -68032457 + (TA)n Simple_repeat Simple_repeat 2 72 0 5446 157 23 13 chrX 108941683 108941763 -68032377 - L1PB1 LINE L1 -640 6930 6852 2882 9 0 0 chrX 108941763 108942078 -68032062 - AluYb8 SINE Alu -3 315 1 5446 157 23 13 chrX 108942078 108942838 -68031302 - L1PB1 LINE L1 -718 6852 6062 1913 175 42 24 chrX 108942938 108944659 -68029481 - L1PB1 LINE L1 -4080 3485 1664 42472 52 3 1 chrX 108944659 108950796 -68023344 + L1PA4 LINE L1 1 6144 -11 3144 253 29 9 chrX 108950811 108951941 -68022199 + L1MB3 LINE L1 5060 6215 -667 2564 198 24 7 chrX 108951943 108952523 -68021617 + L1MB3 LINE L1 6295 6884 -1 1084 252 61 68 chrX 108952532 108953242 -68020898 + L1ME2 LINE L1 3854 4558 -1588 301 109 47 16 chrX 108953249 108953313 -68020827 + L1MB8 LINE L1 6112 6177 -1 794 227 64 44 chrX 108953370 108953665 -68020475 + L1ME2 LINE L1 5297 5597 -569 429 168 32 0 chrX 108953683 108953778 -68020362 - L1MA3 LINE L1 -7 6298 6201 5018 149 1 17 chrX 108953787 108954862 -68019278 - L1MA3 LINE L1 -254 6051 4994 9787 171 19 5 chrX 108954887 108957948 -68016192 - L1MA2 LINE L1 -1 7722 4618 8119 190 38 7 chrX 108957947 108959468 -68014672 - L1MA2 LINE L1 -4887 2678 1111 * 4523 221 32 16 chrX 108959473 108960447 -68013693 - L1MA2 LINE L1 -6563 1002 14 1582 253 45 29 chrX 108960470 108961023 -68013117 + L1ME2 LINE L1 5593 6154 -10 321 336 62 0 chrX 108962742 108962855 -68011285 - MIR SINE MIR -91 171 52 275 319 9 69 chrX 108963466 108963544 -68010596 - MIR3 SINE MIR -16 192 111 2267 120 8 14 chrX 108963544 108963901 -68010239 + THE1A LTR MaLR 1 355 0 10807 100 29 18 chrX 108963901 108964263 -68009877 + THE1A-int LTR MaLR 1 358 -1222 2165 126 0 3 chrX 108964263 108964572 -68009568 - AluSx SINE Alu -4 308 1 10807 100 29 18 chrX 108964572 108965772 -68008368 + THE1A-int LTR MaLR 358 1580 0 2463 116 3 0 chrX 108965772 108966126 -68008014 + THE1A LTR MaLR 1 355 0 275 319 9 69 chrX 108966126 108966161 -68007979 - MIR3 SINE MIR -94 114 84 216 0 0 0 chrX 108966314 108966338 -68007802 + (TG)n Simple_repeat Simple_repeat 1 24 0 451 294 18 25 chrX 108967054 108967217 -68006923 + MER117 DNA MER1_type 36 197 0 22 0 0 0 chrX 108967291 108967313 -68006827 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 108967497 108967527 -68006613 + AT_rich Low_complexity Low_complexity 1 30 0 300 132 0 0 chrX 108967535 108967588 -68006552 + L1MB8 LINE L1 6103 6155 -23 * 6495 180 136 95 chrX 108967583 108968971 -68005169 - L1MCa LINE L1 -4005 2421 1092 818 154 0 15 chrX 108968971 108969101 -68005039 - FLAM_C SINE Alu -13 130 3 6495 180 136 95 chrX 108969101 108969119 -68005021 - L1MCa LINE L1 -5334 1092 1076 183 42 0 0 chrX 108969119 108969143 -68004997 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6495 180 136 95 chrX 108969143 108969928 -68004212 - L1MCa LINE L1 -5350 1076 4 1067 295 96 35 chrX 108969910 108970514 -68003626 - L1MC4a LINE L1 -1914 5894 5254 * 278 266 25 13 chrX 108971268 108971347 -68002793 + MIR SINE MIR 12 91 -171 201 343 66 36 chrX 108971567 108971704 -68002436 + MIR SINE MIR 76 216 -46 608 302 79 40 chrX 108972183 108972435 -68001705 + MIR SINE MIR 1 262 0 180 152 0 0 chrX 108972504 108972537 -68001603 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 2362 203 91 9 chrX 108973467 108974152 -67999988 + L1MA2 LINE L1 2571 3311 -2835 * 7644 156 21 13 chrX 108974149 108974459 -67999681 + L1MA2 LINE L1 3746 4052 -2252 203 0 0 36 chrX 108974459 108974487 -67999653 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 2071 111 3 3 chrX 108974492 108974780 -67999360 - AluSx SINE Alu -24 288 1 7644 156 21 13 chrX 108974780 108977001 -67997139 + L1MA2 LINE L1 4055 6304 0 287 335 153 43 chrX 108977136 108977509 -67996631 + L2 LINE L2 2859 3272 0 791 174 0 15 chrX 108977592 108977724 -67996416 + FLAM_C SINE Alu 4 133 -10 1214 294 60 57 chrX 108978265 108978418 -67995722 - L2 LINE L2 -2 3311 3160 297 0 0 0 chrX 108978418 108978451 -67995689 + (TG)n Simple_repeat Simple_repeat 2 34 0 1214 294 60 57 chrX 108978451 108978886 -67995254 - L2 LINE L2 -153 3160 2709 261 196 143 54 chrX 108979120 108979232 -67994908 - MIR SINE MIR -17 245 124 585 224 249 10 chrX 108979408 108979609 -67994531 - MIR SINE MIR -3 259 11 274 200 0 25 chrX 108980129 108980209 -67993931 + GA-rich Low_complexity Low_complexity 1 78 0 280 336 52 9 chrX 108980394 108980510 -67993630 + L2 LINE L2 3152 3272 0 2141 134 129 11 chrX 108981414 108981795 -67992345 + MSTA LTR MaLR 1 426 -2 599 262 48 59 chrX 108981917 108982104 -67992036 + MIR SINE MIR 45 229 -33 303 284 0 0 chrX 108982586 108982653 -67991487 + L1MB8 LINE L1 5990 6056 -122 44509 38 1 1 chrX 108982658 108988697 -67985443 + L1PA3 LINE L1 3 6037 -118 4380 84 8 16 chrX 108988800 108989406 -67984734 + HERVK9 LTR ERVK 67 667 -5249 * 16597 102 4 0 chrX 108989402 108992947 -67981193 + HERVK9 LTR ERVK 1626 5186 -730 553 294 5 5 chrX 108992918 108993122 -67981018 + HERVK9 LTR ERVK 5801 6004 -1748 * 3387 80 0 0 chrX 108993148 108993600 -67980540 + HERVK9 LTR ERVK 5183 5634 -282 2012 91 4 0 chrX 108993685 108993975 -67980165 + HERVK9 LTR ERVK 5635 5914 -2 2772 113 27 40 chrX 108993989 108994469 -67979671 + MER9 LTR ERVK 38 511 0 743 179 0 7 chrX 108994469 108994614 -67979526 + L1PB1 LINE L1 6006 6149 -2 25 0 0 0 chrX 108994945 108994970 -67979170 + AT_rich Low_complexity Low_complexity 1 25 0 4040 117 32 2 chrX 108995126 108995757 -67978383 + L1PA14 LINE L1 5503 6152 -9 2252 174 58 4 chrX 108995772 108996459 -67977681 + L1MA8 LINE L1 5053 5765 -526 2176 175 57 14 chrX 108997827 108998318 -67975822 + L1MA8 LINE L1 5754 6265 -26 1024 204 0 5 chrX 108998433 108998653 -67975487 + L1PB4 LINE L1 5938 6156 0 581 279 131 44 chrX 108998775 108999120 -67975020 + L1M4 LINE L1 4111 4507 -1639 2001 151 0 0 chrX 108999120 108999412 -67974728 + AluSx SINE Alu 1 292 -20 581 279 131 44 chrX 108999412 108999524 -67974616 + L1M4 LINE L1 4507 4608 -1538 26 30 0 0 chrX 108999617 108999650 -67974490 + AT_rich Low_complexity Low_complexity 1 33 0 495 130 60 10 chrX 108999801 108999901 -67974239 - L1M1 LINE L1 -3903 3662 3558 17636 44 3 1 chrX 108999915 109005934 -67968206 - L1PA3 LINE L1 0 6155 9 1496 154 22 0 chrX 109005998 109006322 -67967818 - L1M1 LINE L1 -4036 3529 3199 * 14794 221 30 17 chrX 109006294 109009316 -67964824 - L1PA13 LINE L1 -800 5997 3014 225 0 0 0 chrX 109009316 109009341 -67964799 + (TG)n Simple_repeat Simple_repeat 2 26 0 14794 221 30 17 chrX 109009341 109010239 -67963901 - L1PA13 LINE L1 -3783 3014 2129 1769 151 46 35 chrX 109010239 109010609 -67963531 + THE1C LTR MaLR 1 374 -1 14794 221 30 17 chrX 109010609 109012598 -67961542 - L1PA13 LINE L1 -4668 2129 1 637 264 37 21 chrX 109012604 109012930 -67961210 - L1M4 LINE L1 -810 5336 5006 451 256 7 36 chrX 109012973 109013110 -67961030 + L1M4 LINE L1 3029 3161 -2985 1237 152 91 4 chrX 109013178 109013238 -67960902 - L1MA6 LINE L1 0 6300 6247 195 42 0 0 chrX 109013238 109013262 -67960878 + (TA)n Simple_repeat Simple_repeat 1 24 0 1237 152 91 4 chrX 109013262 109013464 -67960676 - L1MA6 LINE L1 -53 6247 6015 1197 296 18 12 chrX 109013494 109013988 -67960152 - L1M1 LINE L1 -5173 1624 1128 692 328 30 40 chrX 109014591 109015021 -67959119 - L1M1 LINE L1 -5503 1215 790 * 4317 185 19 21 chrX 109015019 109016152 -67957988 - L1MA8 LINE L1 -44 6247 5118 1982 238 19 64 chrX 109016155 109016907 -67957233 - L1M4 LINE L1 -1154 4992 4275 2392 49 26 3 chrX 109016918 109017225 -67956915 - L1PA4 LINE L1 -5 6150 5837 1782 173 0 0 chrX 109067225 109067497 -67906643 - Charlie3 DNA MER1_type -2438 272 1 2058 62 208 235 chrX 109067528 109068128 -67906012 + LTR12 LTR ERV1 1 584 -130 22180 87 4 5 chrX 109068148 109071066 -67903074 + HERV9 LTR ERV1 58 2972 -5427 * 27696 77 12 6 chrX 109071065 109074687 -67899453 + HERV9 LTR ERV1 4756 8399 0 6002 68 1 145 chrX 109074687 109075652 -67898488 + LTR12 LTR ERV1 1 826 0 471 266 37 0 chrX 109076601 109076710 -67897430 + L2 LINE L2 3199 3311 -2 209 274 104 0 chrX 109076729 109076800 -67897340 - MIR SINE MIR -78 130 44 11176 97 1 0 chrX 109076852 109078356 -67895784 + L1PA4 LINE L1 1 1506 -4640 22105 35 2 0 chrX 109078356 109081665 -67892475 + L1PA4 LINE L1 2812 6155 0 770 228 0 95 chrX 109081666 109081877 -67892263 + MIR SINE MIR 23 213 -49 187 241 0 63 chrX 109082546 109082625 -67891515 - MIR SINE MIR -7 255 182 311 285 14 145 chrX 109082705 109082841 -67891299 - L2 LINE L2 -387 2927 2825 2440 60 0 3 chrX 109082841 109083140 -67891000 + AluY SINE Alu 5 302 -9 311 285 14 145 chrX 109083140 109083210 -67890930 - L2 LINE L2 -489 2825 2748 1588 149 21 21 chrX 109083810 109084092 -67890048 + L1MB2 LINE L1 5879 6160 -11 281 394 56 7 chrX 109084228 109084370 -67889770 - L2 LINE L2 -9 3263 3115 635 288 96 71 chrX 109085024 109085472 -67888668 + LTR67 LTR ERVL 97 555 -2 565 365 13 13 chrX 109085568 109085801 -67888339 + MIR SINE MIR 20 252 -10 2708 162 43 2 chrX 109086406 109086868 -67887272 - L1PB4 LINE L1 0 6156 5676 737 43 21 0 chrX 109086879 109086973 -67887167 - L1MA2 LINE L1 0 6304 6209 437 151 0 45 chrX 109086974 109087090 -67887050 - L1PB4 LINE L1 -467 5684 5579 2616 263 38 19 chrX 109087521 109087952 -67886188 + L1ME2 LINE L1 5157 5578 -586 2744 171 19 2 chrX 109087952 109088474 -67885666 - L1MB3 LINE L1 -5 6178 5648 2616 263 38 19 chrX 109088474 109089028 -67885112 + L1ME2 LINE L1 5578 6163 -1 21 36 0 0 chrX 109089801 109089829 -67884311 + AT_rich Low_complexity Low_complexity 1 28 0 23 92 0 0 chrX 109090403 109090468 -67883672 + AT_rich Low_complexity Low_complexity 1 65 0 515 322 26 53 chrX 109091203 109091430 -67882710 - MIR SINE MIR -27 235 15 474 326 39 72 chrX 109092670 109092694 -67881446 - L2 LINE L2 -8 3305 3282 1257 174 26 4 chrX 109092694 109092924 -67881216 + MER46A DNA MER2_type 2 236 0 474 326 39 72 chrX 109092924 109093288 -67880852 - L2 LINE L2 -31 3282 2930 459 338 36 73 chrX 109093316 109093783 -67880357 + L2 LINE L2 1473 1919 -1395 5248 41 2 3 chrX 109093783 109094415 -67879725 - L1PA5 LINE L1 0 6154 5524 459 338 36 73 chrX 109094415 109094495 -67879645 + L2 LINE L2 1919 2000 -1314 616 100 0 10 chrX 109095087 109095187 -67878953 + L1MA6 LINE L1 6202 6300 0 276 263 81 10 chrX 109095565 109095664 -67878476 + MIR SINE MIR 97 202 -60 363 78 0 0 chrX 109095696 109095747 -67878393 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chrX 109096101 109096129 -67878011 + AT_rich Low_complexity Low_complexity 1 28 0 226 356 35 103 chrX 109096324 109096585 -67877555 + L2 LINE L2 2968 3210 -62 773 369 73 20 chrX 109097128 109097824 -67876316 + L2 LINE L2 2555 3272 0 189 0 0 0 chrX 109098130 109098151 -67875989 + (TG)n Simple_repeat Simple_repeat 2 22 0 558 319 22 16 chrX 109099165 109099347 -67874793 - MIR SINE MIR -57 205 23 247 62 0 0 chrX 109099360 109099392 -67874748 - L1MA9 LINE L1 -5 6307 6276 582 276 28 11 chrX 109099993 109100174 -67873966 + MIR SINE MIR 20 203 -59 737 241 79 14 chrX 109103436 109103652 -67870488 - MIR SINE MIR -31 231 2 603 269 46 67 chrX 109103821 109104103 -67870037 + L3 LINE CR1 1064 1339 -238 719 171 26 7 chrX 109104149 109104301 -67869839 - Charlie4 DNA MER1_type -6 1955 1801 180 0 0 0 chrX 109104322 109104342 -67869798 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 385 282 149 0 chrX 109104370 109104558 -67869582 - Charlie4 DNA MER1_type -1745 216 1 342 304 113 30 chrX 109104558 109104726 -67869414 + L3 LINE CR1 1388 1569 -8 213 39 0 0 chrX 109104951 109104977 -67869163 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2077 109 0 11 chrX 109104980 109105263 -67868877 - AluSg SINE Alu -30 280 1 231 344 25 33 chrX 109105449 109105571 -67868569 + L2 LINE L2 2933 3053 -219 613 265 67 59 chrX 109106640 109106878 -67867262 - MIR SINE MIR -21 241 2 1210 99 6 0 chrX 109107525 109107706 -67866434 + L1MA3 LINE L1 6096 6277 -28 341 123 15 0 chrX 109107727 109107792 -67866348 + (TA)n Simple_repeat Simple_repeat 1 66 0 268 200 22 44 chrX 109107796 109107886 -67866254 + L1MC4 LINE L1 6615 6702 -1340 363 230 0 0 chrX 109107892 109108005 -67866135 + (TA)n Simple_repeat Simple_repeat 1 113 0 232 303 0 0 chrX 109108009 109108098 -67866042 - L1MC4 LINE L1 -1339 6703 6615 269 259 0 0 chrX 109108117 109108202 -67865938 - L1MC4 LINE L1 -1344 6698 6614 297 265 0 10 chrX 109108759 109108776 -67865364 - L1MA10 LINE L1 -1 6333 6317 1588 237 71 79 chrX 109108776 109109435 -67864705 - L1ME2 LINE L1 -9 6155 5502 1654 192 38 9 chrX 109109437 109109781 -67864359 - MER4D LTR ERV1 0 903 550 1424 112 167 27 chrX 109109817 109110075 -67864065 - MER49 LTR ERV1 -629 294 1 2677 184 174 22 chrX 109110095 109110778 -67863362 - LTR48 LTR ERV1 0 787 1 898 173 25 52 chrX 109110778 109111047 -67863093 - L1ME2 LINE L1 -683 5481 5219 2358 35 3 0 chrX 109111099 109111384 -67862756 - L1PA8 LINE L1 -298 5874 5589 1128 300 76 38 chrX 109111387 109112795 -67861345 - L1M4 LINE L1 -4832 1281 35 252 0 0 0 chrX 109112838 109112866 -67861274 + (TAG)n Simple_repeat Simple_repeat 1 28 0 214 323 46 15 chrX 109112901 109112966 -67861174 - MIR SINE MIR -195 67 1 1966 113 16 4 chrX 109113135 109113567 -67860573 + MER41C LTR ERV1 1 508 -46 446 122 33 44 chrX 109113574 109113664 -67860476 + MER41C-int LTR ERV1 1 89 -5857 * 27664 121 11 7 chrX 109113661 109117730 -67856410 + MER41C-int LTR ERV1 3670 7756 0 1778 148 69 3 chrX 109117730 109118035 -67856105 + MER41C LTR ERV1 1 325 -229 963 103 0 33 chrX 109118039 109118223 -67855917 + (TA)n Simple_repeat Simple_repeat 1 178 0 308 235 71 12 chrX 109118235 109118320 -67855820 + L1MC4 LINE L1 6614 6703 -1339 1317 148 5 0 chrX 109118332 109118542 -67855598 + MER41C LTR ERV1 344 554 0 184 349 0 24 chrX 109118610 109118693 -67855447 - MIR SINE MIR -131 131 51 5039 100 34 5 chrX 109118950 109119727 -67854413 + L1MA3 LINE L1 5507 6305 0 852 266 28 16 chrX 109120697 109120945 -67853195 - MIR SINE MIR 0 262 12 240 302 127 40 chrX 109121020 109121146 -67852994 + MIR3 SINE MIR 4 140 -68 * 398 213 50 0 chrX 109121145 109121225 -67852915 - L2 LINE L2 -8 3264 3181 208 300 0 0 chrX 109121235 109121285 -67852855 + MIR3 SINE MIR 139 188 -20 374 227 57 0 chrX 109122195 109122283 -67851857 - MIR3 SINE MIR -42 166 74 17244 183 47 9 chrX 109124311 109126264 -67847876 - L1MA2 LINE L1 0 7723 5846 2250 91 0 3 chrX 109126264 109126551 -67847589 - AluSg SINE Alu -20 290 5 17244 183 47 9 chrX 109126551 109128591 -67845549 - L1MA2 LINE L1 -1877 5846 3885 207 0 0 0 chrX 109128591 109128614 -67845526 + (TAATG)n Simple_repeat Simple_repeat 3 25 0 17244 183 47 9 chrX 109128614 109131862 -67842278 - L1MA2 LINE L1 -3838 3885 196 829 235 86 0 chrX 109131856 109132018 -67842122 - L1M1 LINE L1 -5803 1762 1587 * 790 186 44 22 chrX 109132033 109132216 -67841924 - L1MA2 LINE L1 -7363 202 16 21 0 0 0 chrX 109133751 109133772 -67840368 + AT_rich Low_complexity Low_complexity 1 21 0 3512 142 4 2 chrX 109133772 109134321 -67839819 - L1PA15 LINE L1 -144 6021 5472 18512 27 1 1 chrX 109134871 109137981 -67836159 + L1PA3 LINE L1 3060 6155 0 25 0 0 0 chrX 109138102 109138127 -67836013 + AT_rich Low_complexity Low_complexity 1 25 0 238 329 201 4 chrX 109138321 109138555 -67835585 + L2 LINE L2 3034 3313 0 576 273 41 23 chrX 109138712 109138884 -67835256 + MER5B DNA MER1_type 4 178 0 265 381 28 12 chrX 109139893 109140142 -67833998 - L2 LINE L2 -1362 1952 1700 1314 253 93 30 chrX 109140221 109140695 -67833445 + MLT1J LTR MaLR 8 511 0 287 207 103 0 chrX 109140950 109141037 -67833103 + L1M1 LINE L1 12 107 -7458 12287 173 27 13 chrX 109141222 109143515 -67830625 + L1M1 LINE L1 101 2425 -5140 3223 185 81 12 chrX 109143515 109144897 -67829243 + L1M1 LINE L1 2875 4349 -3216 240 35 0 0 chrX 109145802 109145831 -67828309 + (A)n Simple_repeat Simple_repeat 1 29 0 2313 99 10 0 chrX 109146531 109146833 -67827307 + AluSg SINE Alu 1 305 -5 468 233 75 23 chrX 109146991 109147124 -67827016 - MIR SINE MIR -9 253 114 251 350 60 17 chrX 109147843 109147960 -67826180 + L2 LINE L2 3192 3313 0 393 222 19 74 chrX 109148064 109148172 -67825968 + MER5B DNA MER1_type 2 103 -75 585 229 98 20 chrX 109148211 109148254 -67825886 - MER5A DNA MER1_type -21 168 130 2388 69 0 3 chrX 109148254 109148557 -67825583 + AluY SINE Alu 1 302 -9 585 229 98 20 chrX 109148557 109148666 -67825474 - MER5A DNA MER1_type -59 130 4 252 200 18 0 chrX 109148760 109148815 -67825325 - MIR SINE MIR -19 243 188 4180 282 38 46 chrX 109151478 109152518 -67821622 + L1PA15 LINE L1 1 1047 -6537 2306 118 129 3 chrX 109152518 109152898 -67821242 + MSTA LTR MaLR 1 428 0 4180 282 38 46 chrX 109152898 109154210 -67819930 + L1PA15 LINE L1 1047 2367 -5217 1575 142 106 33 chrX 109154210 109154484 -67819656 + AluSg SINE Alu 17 310 0 4180 282 38 46 chrX 109154484 109156025 -67818115 + L1PA15 LINE L1 2367 4132 -3452 2008 91 13 8 chrX 109156029 109156419 -67817721 + LTR7 LTR ERV1 1 443 -7 11275 100 1 34 chrX 109156425 109158267 -67815873 + HERVH LTR ERV1 1215 2995 -4718 864 153 7 0 chrX 109158246 109158396 -67815744 + HERVH LTR ERV1 3140 3290 -4423 * 1519 122 0 0 chrX 109158395 109158632 -67815508 + HERVH LTR ERV1 3500 3736 -3977 1509 158 78 4 chrX 109158625 109158927 -67815213 + HERVH LTR ERV1 3962 4288 -2372 * 5922 119 7 2 chrX 109158927 109159852 -67814288 + HERVH LTR ERV1 4221 5149 -2564 1328 117 33 0 chrX 109159853 109160066 -67814074 + HERVH LTR ERV1 5600 5819 -1894 256 108 0 0 chrX 109160066 109160103 -67814037 + HERVH LTR ERV1 7324 7360 -353 2172 93 50 14 chrX 109160103 109160467 -67813673 + HERVH LTR ERV1 7337 7713 0 2571 80 131 5 chrX 109160467 109160865 -67813275 + LTR7 LTR ERV1 1 448 -2 10395 208 9 16 chrX 109160883 109164362 -67809778 + L1PA15 LINE L1 4148 7603 0 215 216 0 0 chrX 109165147 109165198 -67808942 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 297 271 180 41 chrX 109165265 109165441 -67808699 - L2 LINE L2 -274 2998 2797 703 314 137 29 chrX 109165567 109166183 -67807957 - L2 LINE L2 0 3313 2614 354 190 58 66 chrX 109166288 109166409 -67807731 + MER103 DNA DNA 3 122 -44 957 313 9 12 chrX 109166965 109167301 -67806839 - LTR16A LTR ERVL -100 350 16 323 189 57 74 chrX 109167379 109167501 -67806639 + MER103 DNA DNA 3 122 -44 946 27 0 0 chrX 109167956 109168068 -67806072 - L1PA3 LINE L1 0 6155 6044 355 225 42 0 chrX 109168425 109168496 -67805644 - MER2 DNA MER2_type -2 343 270 1228 144 5 0 chrX 109168522 109168724 -67805416 - MER2 DNA MER2_type -139 206 4 261 0 0 0 chrX 109168893 109168922 -67805218 + (TG)n Simple_repeat Simple_repeat 2 30 0 1014 83 14 0 chrX 109169863 109170007 -67804133 - L1MA1 LINE L1 0 6302 6157 4588 197 14 63 chrX 109170007 109171163 -67802977 - L1M1 LINE L1 -6448 1117 19 713 115 0 0 chrX 109171227 109171323 -67802817 - AluSg/x SINE Alu -20 290 195 892 131 60 10 chrX 109172330 109172522 -67801618 - THE1C LTR MaLR -153 211 17 201 341 107 21 chrX 109173868 109174196 -67799944 + L2 LINE L2 1967 2322 -992 279 79 0 0 chrX 109174456 109174494 -67799646 + (TA)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chrX 109174493 109174516 -67799624 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 475 207 0 18 chrX 109174546 109174657 -67799483 + MSTA LTR MaLR 1 109 -319 * 730 165 57 32 chrX 109174632 109174790 -67799350 - THE1C LTR MaLR -213 162 1 3518 177 86 15 chrX 109174790 109175642 -67798498 + THE1C-int LTR MaLR 739 1580 0 1880 152 35 19 chrX 109175642 109176010 -67798130 + THE1C LTR MaLR 1 374 -1 23 54 0 0 chrX 109176199 109176236 -67797904 + AT_rich Low_complexity Low_complexity 1 37 0 249 184 119 101 chrX 109176533 109176642 -67797498 - L1ME LINE L1 -463 5658 5548 761 241 64 12 chrX 109176806 109177055 -67797085 + MER93b LTR ERV1 98 359 -14 269 284 134 0 chrX 109177062 109177189 -67796951 - L1ME LINE L1 -2278 5530 5387 465 268 11 56 chrX 109177267 109177446 -67796694 + MIR SINE MIR 92 262 0 25 0 0 0 chrX 109177487 109177512 -67796628 + AT_rich Low_complexity Low_complexity 1 25 0 230 252 56 28 chrX 109177774 109177881 -67796259 - L1ME LINE L1 -1313 4833 4724 328 248 120 8 chrX 109178517 109178650 -67795490 - L1ME LINE L1 -3241 2905 2758 1496 206 20 7 chrX 109178768 109179060 -67795080 - AluJo SINE Alu -16 296 1 222 343 14 0 chrX 109179089 109179162 -67794978 + MIR SINE MIR 49 122 -140 321 26 0 0 chrX 109179408 109179446 -67794694 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 254 266 59 15 chrX 109179488 109179575 -67794565 - MIR SINE MIR -104 104 30 505 268 6 27 chrX 109179896 109180079 -67794061 + MER104 DNA MER2_type 1 179 -1 24 0 0 0 chrX 109180150 109180174 -67793966 + AT_rich Low_complexity Low_complexity 1 24 0 184 143 0 0 chrX 109180182 109180210 -67793930 - MIR SINE MIR -64 144 117 297 85 0 0 chrX 109180685 109180732 -67793408 + U5 snRNA snRNA 2 48 -68 252 310 0 14 chrX 109180890 109180961 -67793179 - MIR3 SINE MIR -8 200 131 278 320 30 0 chrX 109181165 109181265 -67792875 + MIR SINE MIR 79 181 -81 318 278 0 0 chrX 109181678 109181750 -67792390 + Charlie1 DNA MER1_type 1 72 -2689 * 1550 149 100 26 chrX 109181747 109182136 -67792004 + Charlie1 DNA MER1_type 2343 2760 -1 1010 228 23 5 chrX 109182195 109182414 -67791726 + MER58A DNA MER1_type 1 223 -1 303 396 9 0 chrX 109182563 109182669 -67791471 - L2 LINE L2 -10 3262 3156 3369 104 28 8 chrX 109182885 109183421 -67790719 - L1MA1 LINE L1 0 6302 5756 3280 106 22 1 chrX 109183421 109183985 -67790155 + L1MA1 LINE L1 5169 5743 -559 2338 108 6 0 chrX 109184320 109184655 -67789485 - L1PA14 LINE L1 -14 6147 5811 371 205 52 11 chrX 109184763 109184866 -67789274 - MIR SINE MIR -63 145 37 2367 109 5 56 chrX 109185045 109185440 -67788700 - THE1C LTR MaLR 0 375 1 517 273 52 17 chrX 109185645 109185817 -67788323 + MIR SINE MIR 84 261 -1 243 278 124 62 chrX 109186439 109186536 -67787604 - L2 LINE L2 -1 3271 3169 1079 179 28 9 chrX 109186569 109186787 -67787353 - L1MB7 LINE L1 -8 6176 5955 796 352 45 43 chrX 109186799 109187519 -67786621 - L2 LINE L2 0 3272 2556 504 158 42 0 chrX 109187641 109187736 -67786404 + LTR50 LTR ERVL 588 686 -109 295 227 30 156 chrX 109187952 109188121 -67786019 - MIR3 SINE MIR -5 203 57 4726 92 0 9 chrX 109188548 109189235 -67784905 + L1PA10 LINE L1 5501 6181 0 518 257 139 7 chrX 109189373 109189517 -67784623 + MER5B DNA MER1_type 1 163 -15 624 317 74 0 chrX 109190065 109190295 -67783845 + MIR SINE MIR 5 251 -11 198 103 0 0 chrX 109191061 109191090 -67783050 + (T)n Simple_repeat Simple_repeat 1 29 0 495 318 91 29 chrX 109191313 109191555 -67782585 - MIR SINE MIR -4 258 2 1040 16 0 0 chrX 109192254 109192376 -67781764 + L1PA4 LINE L1 6031 6152 -3 183 80 0 0 chrX 109192379 109192404 -67781736 + (A)n Simple_repeat Simple_repeat 1 25 0 4760 171 23 7 chrX 109192989 109193977 -67780163 - L1MB2 LINE L1 0 6171 5168 360 77 0 0 chrX 109194270 109194322 -67779818 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 631 288 132 31 chrX 109194326 109194583 -67779557 - L2 LINE L2 -17 3296 3014 253 394 44 20 chrX 109195649 109195852 -67778288 + L2 LINE L2 2757 2964 -350 308 186 0 34 chrX 109196253 109196312 -67777828 + L2 LINE L2 3257 3313 0 1736 168 0 36 chrX 109196918 109197222 -67776918 + AluJo SINE Alu 1 293 -19 543 279 59 81 chrX 109197367 109197725 -67776415 + L1MC4a LINE L1 5350 5699 -463 472 278 40 8 chrX 109197744 109197870 -67776270 - L2 LINE L2 -2 3311 3182 322 272 146 80 chrX 109197870 109198219 -67775921 + L1MC4a LINE L1 5705 6076 -1732 1891 187 47 28 chrX 109198288 109198711 -67775429 - MSTB1 LTR MaLR -1 431 1 27 29 0 0 chrX 109198741 109198775 -67775365 + AT_rich Low_complexity Low_complexity 1 34 0 180 111 0 0 chrX 109198794 109198821 -67775319 + (A)n Simple_repeat Simple_repeat 1 27 0 673 271 107 18 chrX 109201454 109201679 -67772461 - MIR SINE MIR -17 245 1 226 0 29 29 chrX 109202568 109202603 -67771537 + (TCTA)n Simple_repeat Simple_repeat 1 35 0 29 0 0 0 chrX 109202771 109202800 -67771340 + AT_rich Low_complexity Low_complexity 1 29 0 370 338 106 7 chrX 109203288 109203430 -67770710 + MIR3 SINE MIR 39 194 -14 219 381 13 52 chrX 109204417 109204572 -67769568 - MIR3 SINE MIR -38 170 22 252 243 144 36 chrX 109204652 109204763 -67769377 + MIR SINE MIR 3 125 -137 3375 236 123 28 chrX 109204778 109205325 -67768815 - L1MEc LINE L1 -3940 2456 1962 493 54 14 14 chrX 109205325 109205399 -67768741 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 3375 236 123 28 chrX 109205399 109205849 -67768291 - L1MEc LINE L1 -4434 1962 1556 1938 168 41 68 chrX 109205849 109205927 -67768213 + MSTC LTR MaLR 1 80 -348 2239 99 0 0 chrX 109205927 109206211 -67767929 - AluSx SINE Alu -24 288 5 1938 168 41 68 chrX 109206211 109206572 -67767568 + MSTC LTR MaLR 80 428 0 3375 236 123 28 chrX 109206572 109207015 -67767125 - L1MEc LINE L1 -4840 1556 878 2773 261 45 13 chrX 109207016 109207797 -67766343 - L1MEc LINE L1 -5555 841 36 353 274 20 10 chrX 109207804 109207906 -67766234 + MIR SINE MIR 106 208 -54 396 0 0 0 chrX 109208246 109208290 -67765850 + (TG)n Simple_repeat Simple_repeat 2 45 0 293 0 27 0 chrX 109208294 109208331 -67765809 + (GA)n Simple_repeat Simple_repeat 1 38 0 279 282 115 0 chrX 109208767 109208845 -67765295 - L2 LINE L2 0 3313 3227 326 291 116 37 chrX 109209402 109209591 -67764549 - L2 LINE L2 -350 2964 2761 508 351 16 5 chrX 109209611 109209796 -67764344 + MIR3 SINE MIR 19 205 -3 702 148 30 53 chrX 109210139 109210308 -67763832 - L1MB8 LINE L1 -5 6173 6009 2408 149 33 23 chrX 109210438 109210868 -67763272 - Tigger2a DNA MER2_type 0 434 1 280 261 250 0 chrX 109211804 109211896 -67762244 + MER5A DNA MER1_type 75 189 0 202 270 0 16 chrX 109211947 109212010 -67762130 - MER5A DNA MER1_type -82 107 46 537 310 90 57 chrX 109213273 109213695 -67760445 - L2 LINE L2 -1 3312 2877 182 346 45 45 chrX 109214240 109214373 -67759767 + L2 LINE L2 3055 3187 -85 1276 209 38 72 chrX 109214782 109214996 -67759144 - L1MC5 LINE L1 -53 7908 7688 722 108 47 0 chrX 109214996 109215125 -67759015 - L1MA8 LINE L1 -6 6285 6151 1276 209 38 72 chrX 109215125 109215383 -67758757 - L1MC5 LINE L1 -273 7688 7452 1277 150 26 26 chrX 109215402 109215629 -67758511 - AluJo SINE Alu 0 312 86 504 250 36 36 chrX 109215636 109215804 -67758336 - L1MC5 LINE L1 -518 7443 7276 415 271 16 0 chrX 109215804 109215926 -67758214 + MIR SINE MIR 110 233 -29 623 39 0 0 chrX 109215932 109216010 -67758130 + L1PA5 LINE L1 6073 6150 -4 2063 115 6 13 chrX 109216036 109216385 -67757755 + AluSx SINE Alu 1 347 0 220 381 0 0 chrX 109216446 109216509 -67757631 - L2 LINE L2 -11 3261 3199 501 266 14 92 chrX 109216511 109216718 -67757422 - L1M4 LINE L1 -1042 5104 4914 956 277 72 21 chrX 109216730 109217260 -67756880 - L1MDa LINE L1 -2824 3716 3160 1256 113 5 0 chrX 109217294 109217479 -67756661 + AluY SINE Alu 126 311 0 5124 173 59 11 chrX 109217507 109218458 -67755682 - L1MA10 LINE L1 0 6334 5430 180 0 0 0 chrX 109218458 109218478 -67755662 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 2284 88 7 0 chrX 109218487 109218783 -67755357 - AluSx SINE Alu -14 298 1 5124 173 59 11 chrX 109218783 109219261 -67754879 - L1MA10 LINE L1 -911 5423 4969 198 0 0 0 chrX 109219261 109219283 -67754857 + (CTATT)n Simple_repeat Simple_repeat 5 26 0 5124 173 59 11 chrX 109219283 109219733 -67754407 - L1MA10 LINE L1 -1365 4969 4354 786 215 0 0 chrX 109219732 109219895 -67754245 + L1MA10 LINE L1 4196 4358 -1788 * 280 246 14 0 chrX 109219893 109219962 -67754178 - L1MDa LINE L1 -3371 3169 3100 * 2301 102 13 0 chrX 109220060 109220365 -67753775 - AluSc SINE Alu 0 309 1 648 241 55 13 chrX 109220402 109220639 -67753501 - L1MDa LINE L1 -3618 2922 2676 5059 132 21 22 chrX 109220640 109221516 -67752624 - L1PA16 LINE L1 0 6166 5311 216 0 0 0 chrX 109221516 109221540 -67752600 + (TTA)n Simple_repeat Simple_repeat 2 25 0 5059 132 21 22 chrX 109221540 109222335 -67751805 - L1PA16 LINE L1 -855 5311 4517 240 205 23 0 chrX 109222374 109222440 -67751700 - L1MDa LINE L1 -3942 2598 2530 1865 207 26 63 chrX 109222615 109222984 -67751156 + Charlie1b DNA MER1_type 6 350 -2411 882 176 0 30 chrX 109222984 109223149 -67750991 - FRAM SINE Alu -2 164 5 1865 207 26 63 chrX 109223149 109223315 -67750825 + Charlie1b DNA MER1_type 350 521 -2 5292 90 4 1 chrX 109224164 109224896 -67749244 - L1PA10 LINE L1 0 6168 5435 813 66 9 0 chrX 109224896 109225002 -67749138 - U6 snRNA snRNA 0 107 1 609 342 51 0 chrX 109225390 109225627 -67748513 + MIR SINE MIR 14 262 0 307 260 95 106 chrX 109226940 109227213 -67746927 + MARNA DNA Mariner 175 444 -142 268 324 0 0 chrX 109227435 109227509 -67746631 - L2 LINE L2 -199 3073 3000 1552 184 7 11 chrX 109227561 109227839 -67746301 + AluJo SINE Alu 13 289 -23 369 290 36 14 chrX 109227849 109227987 -67746153 - L2 LINE L2 -262 3010 2870 180 316 81 88 chrX 109228529 109228826 -67745314 + L2 LINE L2 1357 1651 -1663 387 215 104 30 chrX 109228959 109229094 -67745046 - MIR SINE MIR 0 262 118 418 342 133 4 chrX 109229303 109229543 -67744597 + L2 LINE L2 2118 2388 -926 252 376 88 11 chrX 109229586 109229767 -67744373 + L2 LINE L2 2622 2816 -498 544 319 30 0 chrX 109229798 109229967 -67744173 + MER5B DNA MER1_type 4 177 -1 1243 256 73 5 chrX 109230081 109230506 -67743634 - L1ME2 LINE L1 -10 6154 5698 1115 217 32 29 chrX 109230718 109230995 -67743145 - MLT1D LTR MaLR -8 497 220 2964 134 37 17 chrX 109231019 109231535 -67742605 - L1MA7 LINE L1 -25 6266 5741 484 184 117 98 chrX 109231537 109231700 -67742440 - MLT1D LTR MaLR -460 166 1 426 208 28 47 chrX 109231720 109231826 -67742314 + MIR SINE MIR 123 226 -36 1199 276 101 24 chrX 109231841 109232297 -67741843 - L2 LINE L2 -2 3311 2821 291 202 87 10 chrX 109232364 109232468 -67741672 - L1MA7 LINE L1 -124 6167 6056 201 301 36 36 chrX 109232483 109232566 -67741574 + L2 LINE L2 3226 3308 -5 347 204 131 22 chrX 109233084 109233221 -67740919 - MER53 DNA DNA 0 189 38 2253 266 76 39 chrX 109233306 109234118 -67740022 + L2 LINE L2 1785 2626 -688 2102 124 59 31 chrX 109234118 109234472 -67739668 + THE1B LTR MaLR 1 364 0 11723 98 4 0 chrX 109234472 109236046 -67738094 + THE1B-int LTR MaLR 1 1580 0 2331 123 31 14 chrX 109236046 109236404 -67737736 + THE1B LTR MaLR 1 364 0 189 293 17 0 chrX 109236405 109236463 -67737677 + MIR3 SINE MIR 147 205 -3 2150 111 0 0 chrX 109236802 109237107 -67737033 - AluSc SINE Alu 0 305 1 331 283 35 0 chrX 109237206 109237319 -67736821 + L3 LINE CR1 1234 1350 -227 422 307 123 22 chrX 109237855 109238034 -67736106 - MIR SINE MIR -6 256 60 1272 259 74 42 chrX 109238591 109239281 -67734859 + L1ME3 LINE L1 3729 4440 -1706 1876 244 84 52 chrX 109239300 109240072 -67734068 + L1ME3 LINE L1 4796 5605 -557 2427 62 3 3 chrX 109240072 109240378 -67733762 - AluY SINE Alu -5 306 1 1876 244 84 52 chrX 109240378 109240726 -67733414 + L1ME3 LINE L1 5605 5940 -222 641 268 109 18 chrX 109240733 109241062 -67733078 - L1M4 LINE L1 -1836 4310 3952 330 138 0 0 chrX 109241838 109241896 -67732244 + (TTTC)n Simple_repeat Simple_repeat 2 59 0 834 157 0 8 chrX 109241906 109242040 -67732100 - FLAM_C SINE Alu 0 133 1 754 280 19 38 chrX 109242088 109242299 -67731841 - MIR SINE MIR -45 217 11 200 375 10 0 chrX 109242362 109242458 -67731682 - MIR SINE MIR -84 178 82 183 74 0 0 chrX 109242676 109242692 -67731448 + (TC)n Simple_repeat Simple_repeat 2 20 -8 2490 54 0 0 chrX 109242692 109242986 -67731154 - AluY SINE Alu -17 294 1 183 74 0 0 chrX 109242986 109242996 -67731144 + (TC)n Simple_repeat Simple_repeat 19 28 0 746 222 0 51 chrX 109243083 109243259 -67730881 + MER20 DNA MER1_type 1 167 -52 1336 169 66 33 chrX 109243259 109243459 -67730681 + L1MA9 LINE L1 5968 6185 -127 1486 208 106 6 chrX 109243459 109243819 -67730321 - MSTD LTR MaLR 0 396 1 1336 169 66 33 chrX 109243819 109243950 -67730190 + L1MA9 LINE L1 6185 6310 -2 256 196 0 20 chrX 109243973 109244024 -67730116 + MER20 DNA MER1_type 169 218 -1 1719 143 68 16 chrX 109244576 109244883 -67729257 - L1PA15 LINE L1 0 6165 5843 23 0 0 0 chrX 109244923 109244946 -67729194 + AT_rich Low_complexity Low_complexity 1 23 0 543 297 59 25 chrX 109245168 109245404 -67728736 + MIR SINE MIR 13 256 -6 327 333 76 0 chrX 109245865 109246063 -67728077 + L1ME LINE L1 5547 5759 -362 25 0 0 0 chrX 109246287 109246312 -67727828 + AT_rich Low_complexity Low_complexity 1 25 0 224 236 0 0 chrX 109247049 109247104 -67727036 + T-rich Low_complexity Low_complexity 1 55 0 686 292 80 10 chrX 109247475 109247776 -67726364 - L1ME4a LINE L1 -266 5855 5534 328 267 76 0 chrX 109248122 109248227 -67725913 - L2 LINE L2 -11 3261 3149 3413 54 2 0 chrX 109248478 109248902 -67725238 + L1PA7 LINE L1 5716 6140 -14 576 278 100 6 chrX 109250931 109251111 -67723029 + MIR SINE MIR 48 244 -18 2557 50 0 0 chrX 109251560 109251860 -67722280 - AluY SINE Alu -11 300 1 15210 130 27 6 chrX 109252186 109253984 -67720156 + Tigger1 DNA MER2_type 1 1864 -554 2325 101 0 3 chrX 109253984 109254290 -67719850 - AluSq SINE Alu -8 305 1 15210 130 27 6 chrX 109254290 109254853 -67719287 + Tigger1 DNA MER2_type 1864 2413 -5 1000 251 17 13 chrX 109255486 109255717 -67718423 + MIR SINE MIR 5 236 -26 1976 235 69 29 chrX 109255843 109256421 -67717719 + L1ME3A LINE L1 5565 6165 -5 469 113 104 35 chrX 109256996 109257111 -67717029 - L1MA4 LINE L1 0 6300 6178 1794 139 75 31 chrX 109257281 109257640 -67716500 - THE1C LTR MaLR 0 375 1 360 0 0 0 chrX 109257656 109257696 -67716444 + (TG)n Simple_repeat Simple_repeat 1 40 0 620 276 101 62 chrX 109258255 109258592 -67715548 - L2 LINE L2 -12 3260 2911 2521 123 5 5 chrX 109258850 109259225 -67714915 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 109263656 109263680 -67710460 + AT_rich Low_complexity Low_complexity 1 24 0 518 305 84 14 chrX 109264528 109264763 -67709377 - MIR SINE MIR -4 258 5 321 314 107 35 chrX 109264787 109264956 -67709184 - MIR SINE MIR -74 188 8 21 0 0 0 chrX 109266233 109266254 -67707886 + AT_rich Low_complexity Low_complexity 1 21 0 2054 130 3 0 chrX 109266328 109266621 -67707519 - AluSx SINE Alu -18 294 1 21 0 0 0 chrX 109266933 109266954 -67707186 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 109267313 109267334 -67706806 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chrX 109269514 109269560 -67704580 + (GA)n Simple_repeat Simple_repeat 1 46 0 279 93 0 0 chrX 109269562 109269605 -67704535 + (TG)n Simple_repeat Simple_repeat 2 44 0 365 243 0 65 chrX 109271603 109271643 -67702497 - L3 LINE CR1 -565 1012 971 2172 124 7 3 chrX 109271643 109271950 -67702190 - AluSx SINE Alu -4 308 1 365 243 0 65 chrX 109271950 109272016 -67702124 - L3 LINE CR1 -606 971 913 298 345 110 14 chrX 109272026 109272235 -67701905 - L3 LINE CR1 -1133 444 216 301 325 106 0 chrX 109273169 109273292 -67700848 - MIR3 SINE MIR -41 167 32 473 312 62 7 chrX 109273606 109273882 -67700258 + L1ME3A LINE L1 4603 4893 -1253 484 321 52 46 chrX 109274080 109274407 -67699733 + L1ME3A LINE L1 5023 5351 -795 600 236 118 32 chrX 109274409 109274683 -67699457 + L1ME3A LINE L1 5476 5789 -373 2202 128 0 6 chrX 109274708 109275021 -67699119 + AluSx SINE Alu 1 311 -1 234 236 14 0 chrX 109275055 109275127 -67699013 + MER116 DNA Mariner 6 78 -2 310 307 89 61 chrX 109275243 109275457 -67698683 + L1ME3A LINE L1 5934 6167 -3 22 0 0 0 chrX 109275464 109275486 -67698654 + AT_rich Low_complexity Low_complexity 1 22 0 417 302 59 24 chrX 109276288 109276457 -67697683 - MIR3 SINE MIR -10 198 24 277 320 70 8 chrX 109281995 109282123 -67692017 + L2 LINE L2 3146 3281 -32 241 326 11 11 chrX 109284242 109284331 -67689809 + Charlie4 DNA MER1_type 1869 1957 -4 2057 124 3 40 chrX 109284601 109284923 -67689217 - AluSx SINE Alu -2 310 1 1329 104 23 114 chrX 109287606 109287914 -67686226 - L1PA11 LINE L1 0 6174 5895 412 310 87 38 chrX 109288420 109288604 -67685536 - L2 LINE L2 -1 3312 3120 219 269 381 0 chrX 109288645 109288842 -67685298 - L2 LINE L2 -838 2476 2205 5217 213 42 27 chrX 109289164 109291552 -67682588 - L1MB3 LINE L1 -9 6174 3749 5860 199 60 2 chrX 109291570 109292992 -67681148 - L1MC1 LINE L1 -19 6314 4790 356 183 0 0 chrX 109292994 109293054 -67681086 - FLAM_A SINE Alu -11 122 63 18104 193 28 12 chrX 109293054 109296049 -67678091 - L1MA2 LINE L1 -15 7708 4763 1590 49 0 5 chrX 109296049 109296253 -67677887 - L1PA4 LINE L1 -1 6154 5952 18104 193 28 12 chrX 109296253 109297287 -67676853 - L1MA2 LINE L1 -2960 4763 3747 180 0 0 0 chrX 109297287 109297307 -67676833 + (TTG)n Simple_repeat Simple_repeat 2 21 0 18104 193 28 12 chrX 109297307 109297553 -67676587 - L1MA2 LINE L1 -3976 3747 3506 4937 68 0 3 chrX 109297553 109298185 -67675955 - L1PA7 LINE L1 0 6154 5525 1833 131 0 0 chrX 109298185 109298444 -67675696 + AluSc SINE Alu 31 289 -20 18104 193 28 12 chrX 109298444 109301744 -67672396 - L1MA2 LINE L1 -4216 3507 11 27 49 0 0 chrX 109301785 109301826 -67672314 + AT_rich Low_complexity Low_complexity 1 41 0 1825 215 48 7 chrX 109301989 109302427 -67671713 + L1MA9 LINE L1 3969 4424 -1722 4668 217 26 16 chrX 109302430 109303438 -67670702 + L1MA1 LINE L1 20 1037 -6528 7265 151 15 9 chrX 109303444 109304779 -67669361 + L1MA1 LINE L1 2284 3626 -3939 2160 117 25 28 chrX 109304765 109304784 -67669356 + L1PB2 LINE L1 5761 5779 -372 * 6911 69 1 1 chrX 109304784 109306232 -67667908 + L1PA7 LINE L1 4742 6154 0 2160 117 25 28 chrX 109306232 109306571 -67667569 + L1PB2 LINE L1 5779 6118 -33 13751 192 31 8 chrX 109306591 109310581 -67663559 + L1MA1 LINE L1 3621 7679 -42 3996 188 47 59 chrX 109310667 109312609 -67661531 + L1MA9 LINE L1 4398 6312 0 276 301 96 31 chrX 109312856 109313051 -67661089 - MIR SINE MIR -11 251 36 885 319 81 26 chrX 109313481 109313864 -67660276 - MLT1J LTR MaLR -102 409 6 21 71 0 0 chrX 109314535 109314577 -67659563 + AT_rich Low_complexity Low_complexity 1 42 0 200 204 0 0 chrX 109314616 109314665 -67659475 + (TA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chrX 109314850 109314872 -67659268 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 109314942 109314974 -67659166 + AT_rich Low_complexity Low_complexity 1 32 0 4016 171 44 8 chrX 109314974 109315767 -67658373 - L1MA4 LINE L1 0 6300 5479 962 86 49 37 chrX 109315773 109315936 -67658204 - L1MA3 LINE L1 -10 6295 6131 1213 169 40 0 chrX 109315940 109316266 -67657874 - L1MA4 LINE L1 -743 5403 5135 393 75 0 0 chrX 109316291 109316344 -67657796 + (TG)n Simple_repeat Simple_repeat 1 53 0 496 291 45 0 chrX 109316479 109316613 -67657527 - L2 LINE L2 -3 3310 3171 242 327 57 54 chrX 109316762 109317187 -67656953 + L1ME LINE L1 3723 4148 -1998 409 312 105 24 chrX 109317195 109317749 -67656391 + L1ME LINE L1 4229 4827 -1319 382 292 43 12 chrX 109317954 109318115 -67656025 + L1ME LINE L1 5532 5697 -424 327 49 0 0 chrX 109318317 109318358 -67655782 + (CA)n Simple_repeat Simple_repeat 1 41 0 6280 142 17 31 chrX 109318709 109319686 -67654454 - L1MA2 LINE L1 0 7723 6757 1443 188 40 4 chrX 109319686 109319834 -67654306 - AluJb SINE Alu -30 282 118 198 0 0 0 chrX 109319834 109319856 -67654284 + (TG)n Simple_repeat Simple_repeat 2 23 0 1443 188 40 4 chrX 109319856 109319979 -67654161 - AluJb SINE Alu -194 118 1 6280 142 17 31 chrX 109319979 109320656 -67653484 - L1MA2 LINE L1 -966 6757 6072 * 9280 199 254 22 chrX 109320624 109322591 -67651549 - L1MA2 LINE L1 -2678 4887 3378 240 184 20 20 chrX 109322591 109322640 -67651500 + THE1B LTR MaLR 316 364 0 9280 199 254 22 chrX 109322640 109322850 -67651290 - L1MA2 LINE L1 -4187 3378 3218 333 0 0 0 chrX 109322850 109322887 -67651253 + (TC)n Simple_repeat Simple_repeat 2 38 0 9280 199 254 22 chrX 109322887 109324610 -67649530 - L1MA2 LINE L1 -4347 3218 15 546 286 98 32 chrX 109324689 109325066 -67649074 - L1ME3 LINE L1 -256 6142 5741 736 280 74 23 chrX 109325328 109326030 -67648110 - L1ME3 LINE L1 -748 5634 4971 225 282 0 0 chrX 109326024 109326109 -67648031 - L1ME3 LINE L1 -3178 3204 3120 * 735 168 21 0 chrX 109326329 109326472 -67647668 - L1MC3 LINE L1 -1 7784 7639 23 78 0 0 chrX 109326817 109326868 -67647272 + AT_rich Low_complexity Low_complexity 1 51 0 995 276 71 41 chrX 109326871 109327306 -67646834 - LTR16A1 LTR ERVL -2 455 8 6530 225 62 39 chrX 109327733 109330708 -67643432 - L1MD1 LINE L1 -1 6635 1 378 311 109 44 chrX 109330834 109331162 -67642978 - L1ME3 LINE L1 -4540 1842 1387 240 316 71 12 chrX 109331168 109331336 -67642804 - L1ME3 LINE L1 -4885 1487 1310 22 0 0 0 chrX 109331408 109331430 -67642710 + AT_rich Low_complexity Low_complexity 1 22 0 364 309 61 33 chrX 109331854 109332035 -67642105 - L1ME3 LINE L1 -5665 707 522 21 36 0 0 chrX 109332057 109332085 -67642055 + AT_rich Low_complexity Low_complexity 1 28 0 2733 136 30 37 chrX 109332846 109333383 -67640757 - L1MA3 LINE L1 -2 6303 5771 7371 191 19 13 chrX 109333427 109334549 -67639591 - L1PA15 LINE L1 -13 6152 5038 2051 144 0 7 chrX 109334549 109334854 -67639286 - AluSq SINE Alu -8 305 3 7371 191 19 13 chrX 109334854 109335172 -67638968 - L1PA15 LINE L1 -1127 5038 4723 216 0 0 0 chrX 109335172 109335196 -67638944 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7371 191 19 13 chrX 109335196 109336274 -67637866 - L1PA15 LINE L1 -1442 4723 3620 401 145 0 0 chrX 109336276 109336345 -67637795 + L1MA3 LINE L1 6237 6305 0 529 301 52 0 chrX 109336371 109336584 -67637556 + L1P LINE L1 3294 3517 -2629 3211 202 73 28 chrX 109336587 109337516 -67636624 - L1 LINE L1 -2047 5518 4548 2306 71 14 0 chrX 109337531 109337837 -67636303 - AluSp SINE Alu 0 310 1 3396 87 2 43 chrX 109337837 109338219 -67635921 - L1PB1 LINE L1 -6 6145 5788 2283 116 10 0 chrX 109338219 109338529 -67635611 - AluSq SINE Alu 0 313 1 3396 87 2 43 chrX 109338529 109338661 -67635479 - L1PB1 LINE L1 -363 5788 5652 42648 37 22 1 chrX 109338663 109344677 -67629463 - L1PA3 LINE L1 -11 6144 1 2204 250 27 15 chrX 109344677 109345410 -67628730 - L1 LINE L1 -2985 4580 3839 * 17439 167 25 43 chrX 109345396 109347082 -67627058 - L1 LINE L1 -4098 3467 1871 198 0 0 0 chrX 109347082 109347104 -67627036 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 17439 167 25 43 chrX 109347104 109348794 -67625346 - L1 LINE L1 -5694 1871 152 25 31 0 0 chrX 109348805 109348837 -67625303 + AT_rich Low_complexity Low_complexity 1 32 0 248 346 69 22 chrX 109349124 109349282 -67624858 + MIR SINE MIR 3 165 -57 1900 162 76 29 chrX 109349393 109349926 -67624214 - MLT2A2 LTR ERVL 0 554 1 376 276 172 7 chrX 109350061 109350206 -67623934 + MER5A DNA MER1_type 20 188 -1 445 144 41 0 chrX 109350807 109350904 -67623236 + CT-rich Low_complexity Low_complexity 2 102 0 211 288 0 15 chrX 109351351 109351417 -67622723 - L2 LINE L2 -3 3310 3246 486 269 21 56 chrX 109351770 109351951 -67622189 - MER5A DNA MER1_type 0 189 1 1372 53 0 0 chrX 109352576 109352588 -67621552 + L1P LINE L1 3492 3503 -2643 13632 48 2 1 chrX 109352588 109355071 -67619069 - L1PA4 LINE L1 0 6155 3666 1372 53 0 0 chrX 109355071 109355227 -67618913 + L1PA4 LINE L1 3502 3660 -2486 1571 207 46 14 chrX 109355336 109355684 -67618456 + MLT1A1 LTR MaLR 7 365 0 243 207 27 0 chrX 109356049 109356126 -67618014 - MLT1G1 LTR MaLR -7 588 456 4975 113 13 114 chrX 109356160 109356515 -67617625 - MSTB-int LTR MaLR -688 892 503 1870 166 3 0 chrX 109356515 109356816 -67617324 - AluSx SINE Alu -6 306 5 4975 113 13 114 chrX 109356816 109357452 -67616688 - MSTB-int LTR MaLR -1077 503 1 305 193 0 0 chrX 109357452 109357509 -67616631 - MSTB LTR MaLR 0 426 370 1472 190 39 9 chrX 109357512 109357849 -67616291 + L1MB7 LINE L1 5288 5634 -544 243 0 0 0 chrX 109357851 109357878 -67616262 + (TG)n Simple_repeat Simple_repeat 2 28 0 1504 240 15 0 chrX 109357896 109358225 -67615915 - MER2 DNA MER2_type 0 345 12 248 111 0 0 chrX 109358233 109358278 -67615862 - LTR66 LTR ERVL -172 438 394 230 156 0 0 chrX 109358238 109358283 -67615857 + LTR66 LTR ERVL 394 438 -172 * 210 208 0 0 chrX 109358283 109358331 -67615809 + (CA)n Simple_repeat Simple_repeat 1 48 0 1861 243 14 10 chrX 109358373 109358859 -67615281 + L1MB7 LINE L1 5663 6150 -34 24 0 0 0 chrX 109358866 109358890 -67615250 + AT_rich Low_complexity Low_complexity 1 24 0 605 316 90 12 chrX 109358907 109359306 -67614834 + L1M4 LINE L1 3000 3429 -2717 344 253 35 65 chrX 109359380 109359550 -67614590 + L1ME3A LINE L1 5954 6118 -52 23 0 0 0 chrX 109359577 109359600 -67614540 + AT_rich Low_complexity Low_complexity 1 23 0 1219 112 76 5 chrX 109359604 109359828 -67614312 + L1MA9 LINE L1 6072 6311 -1 1314 291 56 29 chrX 109360136 109360792 -67613348 - L1MC4a LINE L1 -1878 5930 5257 438 337 59 43 chrX 109361160 109361447 -67612693 - L1MC4a LINE L1 -1296 4850 4552 1418 178 7 4 chrX 109361447 109361717 -67612423 - L1MB2 LINE L1 -3 6168 5898 438 337 59 43 chrX 109361717 109361889 -67612251 - L1MC4a LINE L1 -1594 4552 4384 1086 258 60 5 chrX 109361896 109362280 -67611860 - L1MC4a LINE L1 -2166 3980 3576 2126 98 0 3 chrX 109362418 109362768 -67611372 + AluSx SINE Alu 1 349 0 26 50 0 0 chrX 109364294 109364334 -67609806 + AT_rich Low_complexity Low_complexity 1 40 0 21230 191 30 30 chrX 109364571 109371044 -67603096 - L1PA10 LINE L1 0 6483 1 1357 148 62 29 chrX 109371795 109371998 -67602142 + MSTB LTR MaLR 176 390 -36 2030 157 0 0 chrX 109371998 109372291 -67601849 - AluSx SINE Alu -19 293 1 1357 148 62 29 chrX 109372291 109372330 -67601810 + MSTB LTR MaLR 390 426 0 193 356 35 9 chrX 109372799 109372914 -67601226 + L2 LINE L2 2301 2418 -896 465 300 12 82 chrX 109372961 109373204 -67600936 + L3 LINE CR1 778 1003 -574 863 231 36 54 chrX 109373272 109373549 -67600591 + MSTD LTR MaLR 1 272 -124 3382 98 0 2 chrX 109573549 109574031 -67400109 - L1P LINE L1 -1101 5045 4565 5125 109 5 1 chrX 109574032 109574794 -67399346 + L1P LINE L1 2273 3037 -3109 5803 145 4 3 chrX 109574816 109575950 -67398190 - L1PB1 LINE L1 -8 6143 5009 5969 249 14 18 chrX 109576053 109577139 -67397001 + L1 LINE L1 3239 4327 -1819 1774 102 0 0 chrX 109577139 109577374 -67396766 - AluY SINE Alu 0 311 77 5969 249 14 18 chrX 109577374 109577430 -67396710 + L1 LINE L1 4327 4382 -1764 2661 46 0 0 chrX 109577430 109577755 -67396385 + L1PA3 LINE L1 5830 6154 -1 5969 249 14 18 chrX 109577755 109578288 -67395852 + L1 LINE L1 4382 4909 -1237 1598 260 70 14 chrX 109578388 109579035 -67395105 + L1M4 LINE L1 3862 4544 -1602 4614 245 123 15 chrX 109579161 109580362 -67393778 + L1M1 LINE L1 12 1342 -6223 227 195 0 0 chrX 109580389 109580430 -67393710 - Tigger3(Golem) DNA MER2_type -2924 105 65 4159 160 71 26 chrX 109580437 109581386 -67392754 - L1PB4 LINE L1 -13 6143 5153 5523 124 18 30 chrX 109582495 109582518 -67391622 - L1PA13 LINE L1 0 6163 6141 2087 99 7 33 chrX 109582518 109582820 -67391320 + AluSc SINE Alu 1 294 -15 5523 124 18 30 chrX 109582820 109583677 -67390463 - L1PA13 LINE L1 -22 6141 5309 2153 60 8 0 chrX 109583677 109583945 -67390195 - AluY SINE Alu -1 310 41 5523 124 18 30 chrX 109583945 109584652 -67389488 - L1PA13 LINE L1 -854 5309 4595 7017 54 1 6 chrX 109584757 109585614 -67388526 - HERV17 LTR ERV1 -4658 3968 3116 1689 30 0 10 chrX 109585628 109585829 -67388311 + HERV17 LTR ERV1 4002 4200 -4426 2300 118 7 50 chrX 109585850 109586272 -67387868 - L1PA13 LINE L1 -2514 3632 3229 283 287 0 96 chrX 109586318 109586412 -67387728 - L2 LINE L2 -181 3091 3007 186 71 0 0 chrX 109586734 109586762 -67387378 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 5482 132 36 0 chrX 109586768 109587733 -67386407 - L1PA16 LINE L1 -9 6157 5175 6152 67 8 0 chrX 109587840 109588636 -67385504 + L1PA7 LINE L1 5345 6146 -8 608 313 33 33 chrX 109588644 109588855 -67385285 - LTR16C LTR ERVL -82 409 196 1622 184 53 99 chrX 109588855 109589382 -67384758 - MLT1D LTR MaLR 0 505 3 608 313 33 33 chrX 109589382 109589413 -67384727 - LTR16C LTR ERVL -294 197 167 246 348 0 45 chrX 109589465 109589554 -67384586 + L2 LINE L2 325 409 -2905 504 378 46 0 chrX 109589654 109589892 -67384248 + MIR SINE MIR 9 257 -5 230 365 129 37 chrX 109590097 109590639 -67383501 + L2 LINE L2 845 1436 -1878 332 245 0 43 chrX 109590785 109590879 -67383261 - L1MC4 LINE L1 -1339 6703 6614 216 184 0 0 chrX 109590885 109590934 -67383206 + (TA)n Simple_repeat Simple_repeat 2 50 0 1462 227 15 60 chrX 109590941 109591323 -67382817 - L1P4 LINE L1 -476 5698 5338 2138 109 0 0 chrX 109591323 109591646 -67382494 - AluSx SINE Alu 0 323 1 1462 227 15 60 chrX 109591646 109591849 -67382291 - L1P4 LINE L1 -836 5338 5128 28 79 0 0 chrX 109591894 109591957 -67382183 + AT_rich Low_complexity Low_complexity 1 63 0 1066 180 14 0 chrX 109591958 109592175 -67381965 - L1MA8 LINE L1 -13 6278 6059 333 309 73 115 chrX 109592342 109592724 -67381416 - L3 LINE CR1 -97 1480 1115 858 167 7 0 chrX 109592741 109592879 -67381261 - AluJb SINE Alu -45 267 129 6889 132 28 16 chrX 109593055 109594218 -67379922 - L1P LINE L1 -1434 4712 3535 2093 204 40 24 chrX 109594215 109594665 -67379475 + L1M1 LINE L1 873 1329 -6236 * 5494 170 45 4 chrX 109594660 109596379 -67377761 - L1MA2 LINE L1 -37 6267 4485 429 242 0 11 chrX 109596492 109596583 -67377557 + L1P3 LINE L1 87 176 -5699 1796 319 82 19 chrX 109596980 109598002 -67376138 - L1M3a LINE L1 -5166 789 2 2020 272 20 31 chrX 109598029 109598124 -67376016 - L1M4 LINE L1 -2095 4051 3956 237 33 0 0 chrX 109598124 109598154 -67375986 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2020 272 20 31 chrX 109598154 109598915 -67375225 - L1M4 LINE L1 -2190 3956 3205 11385 106 143 32 chrX 109599015 109601078 -67373062 - L1PBa LINE L1 -3938 2925 635 947 189 11 0 chrX 109601084 109601275 -67372865 - L1PBa LINE L1 -6670 193 1 963 155 6 0 chrX 109601283 109601451 -67372689 - L1M4 LINE L1 -678 5500 5332 254 329 25 13 chrX 109602094 109602173 -67371967 - L3 LINE CR1 -108 1469 1390 22 35 0 0 chrX 109602655 109602684 -67371456 + AT_rich Low_complexity Low_complexity 1 29 0 833 241 63 14 chrX 109604127 109604334 -67369806 + MER58A DNA MER1_type 6 222 -2 480 287 16 23 chrX 109604359 109604488 -67369652 + L2 LINE L2 3186 3313 0 1994 241 37 12 chrX 109605111 109605762 -67368378 + L1M4 LINE L1 3658 4324 -1822 644 263 34 0 chrX 109605746 109605921 -67368219 + L1M4 LINE L1 4728 4908 -1238 * 2390 259 88 28 chrX 109606099 109606896 -67367244 + L1PA13 LINE L1 1 845 -5942 4473 188 28 59 chrX 109606899 109607835 -67366305 + HUERS-P2 LTR ERV1 441 1347 -1741 3237 26 0 0 chrX 109607835 109608215 -67365925 + L1PA4 LINE L1 5773 6152 -3 1035 270 24 4 chrX 109608227 109608475 -67365665 + MER93a LTR ERV1 120 372 -30 1305 157 100 0 chrX 109608493 109608722 -67365418 + HUERS-P2 LTR ERV1 1339 1590 -1498 2051 155 27 3 chrX 109608722 109609057 -67365083 - MER61A LTR ERV1 0 343 1 25305 109 32 16 chrX 109609057 109609672 -67364468 - MER61A-int LTR ERV1 0 5217 4613 2107 79 43 18 chrX 109609672 109609952 -67364188 + AluSg SINE Alu 1 287 -23 25305 109 32 16 chrX 109609952 109613632 -67360508 - MER61A-int LTR ERV1 -604 4613 1 371 169 0 0 chrX 109613632 109613691 -67360449 - MER61A LTR ERV1 0 343 285 * 615 189 0 0 chrX 109613683 109613789 -67360351 - MER61A LTR ERV1 -237 106 1 6923 139 11 4 chrX 109613789 109614819 -67359321 + HUERS-P2 LTR ERV1 1587 2623 -465 187 343 65 19 chrX 109615214 109615322 -67358818 + L2 LINE L2 3158 3270 -2 3385 208 4 3 chrX 109616114 109616822 -67357318 - L1P LINE L1 -935 5211 4503 * 4799 185 52 0 chrX 109616820 109617630 -67356510 - L1PA12 LINE L1 -5648 1933 1082 7371 235 49 16 chrX 109617636 109619316 -67354824 - ERVL-B3 LTR ERVL -4000 1764 28 369 0 0 0 chrX 109619328 109619369 -67354771 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 2372 260 12 4 chrX 109619370 109619863 -67354277 - MLT2B3 LTR ERVL -52 502 6 294 269 0 0 chrX 109619879 109619957 -67354183 + A-rich Low_complexity Low_complexity 1 78 0 2851 83 17 72 chrX 109621365 109621792 -67352348 + MLT2A1 LTR ERVL 1 403 -41 369 0 0 0 chrX 109621792 109621833 -67352307 + (CA)n Simple_repeat Simple_repeat 2 42 0 2851 83 17 72 chrX 109621833 109621864 -67352276 + MLT2A1 LTR ERVL 403 434 -10 22 0 0 0 chrX 109622242 109622264 -67351876 + AT_rich Low_complexity Low_complexity 1 22 0 579 241 178 9 chrX 109622676 109622943 -67351197 - L1P4 LINE L1 -364 5801 5488 254 319 55 27 chrX 109622953 109623282 -67350858 - L1M4 LINE L1 -786 5360 5023 388 287 13 13 chrX 109623462 109623612 -67350528 - L1M4 LINE L1 -1246 4900 4751 22 70 0 0 chrX 109623763 109623806 -67350334 + AT_rich Low_complexity Low_complexity 1 43 0 229 307 104 61 chrX 109624067 109624230 -67349910 + MIR3 SINE MIR 32 201 -7 999 121 7 0 chrX 109624335 109624476 -67349664 - AluSq/x SINE Alu -170 143 2 1500 106 22 0 chrX 109624571 109624797 -67349343 - L1MA6 LINE L1 -5 6295 6065 204 185 37 0 chrX 109624826 109624880 -67349260 + A-rich Low_complexity Low_complexity 5 60 0 471 35 0 0 chrX 109626594 109626651 -67347489 + (CA)n Simple_repeat Simple_repeat 2 58 0 2193 106 3 0 chrX 109626919 109627212 -67346928 + AluSp SINE Alu 1 294 -19 2380 185 29 2 chrX 109628024 109628504 -67345636 - L1MB7 LINE L1 -19 6881 6389 11002 211 20 7 chrX 109628676 109630183 -67343957 - L1MB7 LINE L1 -1321 5541 3986 2412 88 0 3 chrX 109630183 109630488 -67343652 - AluY SINE Alu -7 304 1 11002 211 20 7 chrX 109630488 109631571 -67342569 - L1MB7 LINE L1 -2876 3986 2918 857 166 0 14 chrX 109631571 109631716 -67342424 - FLAM_C SINE Alu 0 143 1 8491 183 65 12 chrX 109631716 109631873 -67342267 - L1PBa LINE L1 -3931 2932 2785 2174 132 3 0 chrX 109631873 109632177 -67341963 - AluSp SINE Alu -8 305 1 8491 183 65 12 chrX 109632177 109634660 -67339480 - L1PBa LINE L1 -4078 2785 8 32 67 0 0 chrX 109634930 109634990 -67339150 + AT_rich Low_complexity Low_complexity 1 60 0 15777 48 33 5 chrX 109635763 109637720 -67336420 + HERV17 LTR ERV1 4009 6019 -2607 2339 69 3 0 chrX 109637731 109638032 -67336108 + HERV17 LTR ERV1 6836 8626 0 2688 49 3 0 chrX 109638032 109638357 -67335783 + LTR17 LTR ERV1 1 326 -454 198 103 0 0 chrX 109638357 109638386 -67335754 + (A)n Simple_repeat Simple_repeat 1 29 0 8380 83 24 23 chrX 109638386 109638533 -67335607 + L1P LINE L1 3606 3751 -2395 2078 127 0 0 chrX 109638533 109638816 -67335324 + AluSc SINE Alu 1 283 -26 8380 83 24 23 chrX 109638816 109639901 -67334239 + L1P LINE L1 3751 4839 -1307 315 316 38 38 chrX 109639924 109640057 -67334083 + L2 LINE L2 3179 3311 -2 4834 142 36 9 chrX 109640382 109641464 -67332676 + L1PA16 LINE L1 5062 6166 0 21 57 0 0 chrX 109641585 109641620 -67332520 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 109641794 109641829 -67332311 + AT_rich Low_complexity Low_complexity 1 35 0 1122 192 38 108 chrX 109642154 109642572 -67331568 + MLT2D LTR ERVL 1 534 -20 260 217 0 0 chrX 109642588 109642648 -67331492 + (TA)n Simple_repeat Simple_repeat 1 60 0 260 141 31 0 chrX 109642713 109642777 -67331363 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 284 291 29 58 chrX 109643555 109643658 -67330482 - MIR SINE MIR -114 148 49 1480 268 28 23 chrX 109644366 109644795 -67329345 + MER70A LTR ERVL 1 431 -41 345 182 13 39 chrX 109645266 109645343 -67328797 + MIR3 SINE MIR 125 199 -9 1413 189 3 11 chrX 109645474 109645760 -67328380 - L1P LINE L1 -873 5273 4990 276 152 0 0 chrX 109645760 109645806 -67328334 + L1P LINE L1 4950 4995 -1151 * 1774 212 29 5 chrX 109645804 109646253 -67327887 - L1M4 LINE L1 -797 5349 4890 226 250 0 0 chrX 109646264 109646320 -67327820 + MLT1A1 LTR MaLR 293 348 -17 2294 92 7 0 chrX 109646733 109647027 -67327113 + AluSg SINE Alu 1 296 -14 217 288 162 27 chrX 109647039 109647150 -67326990 - L2 LINE L2 -4 3268 3143 27 62 0 0 chrX 109647798 109647846 -67326294 + AT_rich Low_complexity Low_complexity 1 48 0 2266 124 8 6 chrX 109647867 109648221 -67325919 + THE1A LTR MaLR 1 355 0 10889 106 19 3 chrX 109648221 109649777 -67324363 + THE1A-int LTR MaLR 1 1580 0 2178 120 20 8 chrX 109649777 109650128 -67324012 + THE1A LTR MaLR 1 355 0 23 0 0 0 chrX 109650921 109650944 -67323196 + AT_rich Low_complexity Low_complexity 1 23 0 299 233 68 82 chrX 109651048 109651194 -67322946 + L2 LINE L2 3138 3281 -32 253 316 0 13 chrX 109653138 109653214 -67320926 + Charlie4 DNA MER1_type 1883 1957 -4 21 57 0 0 chrX 109653711 109653746 -67320394 + AT_rich Low_complexity Low_complexity 1 35 0 2212 86 0 7 chrX 109653749 109654039 -67320101 - AluSc SINE Alu -21 288 1 197 200 0 114 chrX 109654150 109654220 -67319920 + MIR SINE MIR 201 262 0 22 0 0 0 chrX 109654414 109654436 -67319704 + AT_rich Low_complexity Low_complexity 1 22 0 1743 84 11 42 chrX 109656513 109656799 -67317341 - L1PA11 LINE L1 0 6174 5898 3659 160 31 66 chrX 109657129 109657942 -67316198 + LTR1 LTR ERV1 2 785 0 400 356 59 15 chrX 109658134 109658336 -67315804 - L2 LINE L2 -1 3312 3102 280 314 206 27 chrX 109658433 109658656 -67315484 - L2 LINE L2 -948 2366 2104 1216 178 0 12 chrX 109658874 109659116 -67315024 - L1MB3 LINE L1 -2 6181 5943 4229 200 30 3 chrX 109659321 109660577 -67313563 - L1MC1 LINE L1 -257 6076 4785 521 275 0 0 chrX 109660585 109660694 -67313446 - FLAM_A SINE Alu -27 115 7 1693 234 32 73 chrX 109660703 109661460 -67312680 - L1MC1 LINE L1 -1345 4801 4076 3614 153 27 32 chrX 109661482 109662189 -67311951 - L1MA2 LINE L1 0 6304 5602 3244 163 23 17 chrX 109662291 109663194 -67310946 - L1 LINE L1 -3657 3908 2997 8597 220 24 15 chrX 109663197 109664963 -67309177 - L1 LINE L1 -5451 2114 334 * 14439 219 77 20 chrX 109664960 109667544 -67306596 - L1P4 LINE L1 -713 6101 3115 1871 161 134 13 chrX 109667544 109667924 -67306216 - MSTA LTR MaLR 0 428 3 14439 219 77 20 chrX 109667924 109669749 -67304391 - L1P4 LINE L1 -3699 3115 1395 576 341 24 19 chrX 109669753 109669964 -67304176 - L1P4 LINE L1 -5531 1256 1045 * 1772 279 110 11 chrX 109669943 109670664 -67303476 + L1P LINE L1 1889 2680 -3466 13113 192 93 13 chrX 109670764 109673541 -67300599 - L1M1 LINE L1 -4552 3013 14 636 244 51 8 chrX 109673538 109673772 -67300368 - L1MDb LINE L1 -4094 2446 2203 * 2503 246 85 20 chrX 109673781 109674899 -67299241 - L1MDb LINE L1 -4382 2158 993 616 288 32 32 chrX 109675683 109675996 -67298144 - L1MDb LINE L1 -6146 394 82 29 0 0 0 chrX 109676067 109676096 -67298044 + AT_rich Low_complexity Low_complexity 1 29 0 184 233 23 0 chrX 109676096 109676139 -67298001 - L2 LINE L2 -17 3255 3212 193 234 0 94 chrX 109676657 109676721 -67297419 - L2 LINE L2 -1 3312 3255 1145 165 45 9 chrX 109678262 109678486 -67295654 - L1PB3 LINE L1 -9 6145 5914 289 181 36 0 chrX 109678534 109678617 -67295523 - L1M2 LINE L1 -4068 2781 2696 423 272 16 16 chrX 109678624 109678808 -67295332 + L1M4 LINE L1 2569 2752 -3394 265 180 0 33 chrX 109678827 109678888 -67295252 + L1M4 LINE L1 2847 2905 -3241 3427 44 0 67 chrX 109678892 109679372 -67294768 - LTR7 LTR ERV1 -2 448 1 2326 72 59 13 chrX 109679372 109679745 -67294395 - HERVH LTR ERV1 0 7713 7324 1291 134 18 5 chrX 109679745 109679962 -67294178 - HERVH LTR ERV1 -1894 5819 5600 4134 139 1 1 chrX 109679963 109680625 -67293515 - HERVH LTR ERV1 -2564 5149 4488 3210 119 0 6 chrX 109680627 109681132 -67293008 - HERVH LTR ERV1 -3720 3993 3492 807 131 41 0 chrX 109681122 109681267 -67292873 - HERVH LTR ERV1 -4423 3290 3140 * 18918 97 20 12 chrX 109681246 109684216 -67289924 - HERVH LTR ERV1 -4718 2995 1 3729 33 0 2 chrX 109684218 109684667 -67289473 - LTR7 LTR ERV1 -2 448 1 186 43 0 0 chrX 109685020 109685043 -67289097 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1000 40 0 0 chrX 109685043 109685167 -67288973 - L1PA4 LINE L1 -12 6143 6020 1463 218 36 36 chrX 109685167 109685744 -67288396 + L1M4 LINE L1 2918 3494 -2652 1142 228 19 46 chrX 109685746 109685885 -67288255 + L1M4 LINE L1 4577 4718 -1428 2081 73 7 11 chrX 109685885 109686193 -67287947 + AluY SINE Alu 12 318 0 1142 228 19 46 chrX 109686193 109686468 -67287672 + L1M4 LINE L1 4718 4981 -1165 2516 130 66 2 chrX 109686502 109686926 -67287214 + MLT2A2 LTR ERVL 1 451 -2 3185 117 2 26 chrX 109686928 109687458 -67286682 + HERVL-A2 LTR ERVL 1 517 -5137 226 200 50 0 chrX 109687569 109687629 -67286511 - L1P4 LINE L1 -564 5601 5539 305 360 9 0 chrX 109688317 109688431 -67285709 - L2 LINE L2 -2 3311 3197 491 310 78 16 chrX 109688471 109688783 -67285357 - L2 LINE L2 -236 3036 2705 322 394 32 16 chrX 109689014 109689260 -67284880 + L2 LINE L2 2507 2756 -558 183 337 0 60 chrX 109689423 109689506 -67284634 + L2 LINE L2 2952 3029 -243 180 200 50 33 chrX 109689627 109689687 -67284453 + L2 LINE L2 3168 3228 -85 606 225 32 32 chrX 109689758 109689945 -67284195 - L1PB4 LINE L1 -1 6155 5969 375 86 17 0 chrX 109689939 109689997 -67284143 + L1P5 LINE L1 5666 5724 -432 * 9319 205 23 7 chrX 109690097 109692837 -67281303 + L1PA15-16 LINE L1 251 2694 -4155 293 295 36 24 chrX 109694185 109694420 -67279720 - L1MDb LINE L1 -4758 1624 1279 327 314 51 58 chrX 109694484 109694664 -67279476 - L1MDb LINE L1 -5060 1325 1194 1876 113 24 0 chrX 109694664 109694955 -67279185 - L1MA1 LINE L1 -3 6299 6002 327 314 51 58 chrX 109694955 109695073 -67279067 - L1MDb LINE L1 -5191 1194 1077 35 63 0 0 chrX 109695131 109695194 -67278946 + AT_rich Low_complexity Low_complexity 1 63 0 872 219 16 0 chrX 109695573 109695765 -67278375 - L1PA15 LINE L1 0 6165 5971 1380 170 82 20 chrX 109695765 109696071 -67278069 - THE1C LTR MaLR 0 375 51 1507 231 117 60 chrX 109696114 109696799 -67277341 - MER50 LTR ERV1 0 734 11 237 91 0 0 chrX 109696806 109696839 -67277301 - THE1C LTR MaLR -395 33 1 5150 205 67 3 chrX 109696839 109697966 -67276174 - THE1C-int LTR MaLR 0 1651 453 589 143 0 0 chrX 109697974 109698065 -67276075 - THE1C-int LTR MaLR -1239 341 251 2445 96 93 10 chrX 109698065 109698473 -67275667 + LTR7 LTR ERV1 1 442 -8 17502 108 19 28 chrX 109698482 109701504 -67272636 + HERVH LTR ERV1 1 2995 -4718 955 107 7 0 chrX 109701483 109701633 -67272507 + HERVH LTR ERV1 3140 3290 -4423 * 3155 112 8 6 chrX 109701623 109702124 -67272016 + HERVH LTR ERV1 3492 3993 -3720 1273 89 0 0 chrX 109702126 109702306 -67271834 + HERVH LTR ERV1 4488 4667 -3046 * 4202 81 0 0 chrX 109702305 109702914 -67271226 + HERVH LTR ERV1 5772 6380 -1333 * 7935 86 21 4 chrX 109702887 109704052 -67270088 + HERVH LTR ERV1 6529 7713 0 2533 83 93 7 chrX 109704052 109704460 -67269680 + LTR7 LTR ERV1 1 443 -7 1492 116 24 8 chrX 109704467 109704718 -67269422 - THE1C-int LTR MaLR -1325 255 1 1407 161 56 100 chrX 109704720 109704758 -67269382 - THE1C LTR MaLR -2 373 335 1890 138 0 4 chrX 109704758 109705027 -67269113 + AluSq SINE Alu 8 275 -38 719 84 19 0 chrX 109705029 109705136 -67269004 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 1407 161 56 100 chrX 109705136 109705484 -67268656 - THE1C LTR MaLR -41 334 1 1078 155 11 0 chrX 109705484 109705671 -67268469 - L1PA15 LINE L1 -190 5975 5787 2306 169 0 15 chrX 109705697 109706104 -67268036 + THE1-int LTR MaLR 619 1019 -561 2925 226 17 44 chrX 109706107 109707191 -67266949 - L1PA15 LINE L1 -645 5520 4416 7624 26 1 0 chrX 109707191 109708855 -67265285 - L1PA4 LINE L1 -3 6152 4487 2925 226 17 44 chrX 109708855 109708967 -67265173 - L1PA15 LINE L1 -1749 4416 4302 436 113 62 31 chrX 109709071 109709168 -67264972 + L1M4 LINE L1 5565 5664 -520 6904 63 8 0 chrX 109709175 109710140 -67264000 + L1PA7 LINE L1 5182 6153 -1 909 131 70 5 chrX 109710145 109710325 -67263815 - L1M4 LINE L1 -645 5533 5339 3913 112 49 3 chrX 109710325 109710961 -67263179 - L1PA13 LINE L1 0 6163 5499 397 293 14 43 chrX 109711433 109711573 -67262567 + L1 LINE L1 3312 3447 -2699 3263 143 21 6 chrX 109711927 109712554 -67261586 + L1 LINE L1 4135 4770 -1376 22 56 0 0 chrX 109713006 109713042 -67261098 + AT_rich Low_complexity Low_complexity 1 36 0 237 350 2 11 chrX 109713219 109713321 -67260819 - MIR SINE MIR -93 115 21 217 308 142 12 chrX 109714127 109714296 -67259844 - L2 LINE L2 -11 3302 3112 2088 165 36 30 chrX 109714418 109714964 -67259176 + MLT2A2 LTR ERVL 1 554 0 207 323 31 31 chrX 109716425 109716521 -67257619 - MIR SINE MIR -152 110 15 2560 270 75 27 chrX 109716543 109717597 -67256543 + L1MD2 LINE L1 337 1441 -5280 3754 144 28 44 chrX 109717711 109718488 -67255652 + L1MA5A LINE L1 5388 6152 -145 1095 132 39 24 chrX 109718495 109718602 -67255538 + L1MA5A LINE L1 6085 6198 -99 3964 159 32 22 chrX 109718602 109719317 -67254823 - MER72 LTR ERV1 0 722 1 1095 132 39 24 chrX 109719317 109719414 -67254726 + L1MA5A LINE L1 6198 6292 -5 29 0 0 0 chrX 109719516 109719545 -67254595 + AT_rich Low_complexity Low_complexity 1 29 0 3218 160 27 36 chrX 109721092 109721756 -67252384 + L1PA14 LINE L1 5475 6132 -29 330 161 0 43 chrX 109721765 109721858 -67252282 + L1PA13 LINE L1 6074 6162 -1 3479 198 23 7 chrX 109721863 109722555 -67251585 + ERVL LTR ERVL 1772 2474 -3290 1429 263 39 16 chrX 109722556 109723302 -67250838 + L1MD2 LINE L1 2411 3168 -3372 358 253 0 0 chrX 109723407 109723482 -67250658 - Tigger3(Golem) DNA MER2_type -2953 76 2 3000 233 25 25 chrX 109723498 109724388 -67249752 + L1MD2 LINE L1 5648 6537 -216 256 291 26 26 chrX 109724387 109724538 -67249602 + L1MD3 LINE L1 7832 7982 -13 * 259 213 25 11 chrX 109724629 109724740 -67249400 + L1ME LINE L1 871 988 -5082 406 301 35 60 chrX 109724843 109724977 -67249163 + L1ME LINE L1 982 1111 -4971 1381 222 84 47 chrX 109724977 109725427 -67248713 - MLT1C LTR MaLR 0 467 1 406 301 35 60 chrX 109725427 109725491 -67248649 + L1ME LINE L1 1111 1175 -4907 856 282 24 39 chrX 109725502 109725839 -67248301 + L1M4 LINE L1 490 821 -5721 24 32 0 0 chrX 109725839 109725870 -67248270 + AT_rich Low_complexity Low_complexity 1 31 0 546 172 40 33 chrX 109725879 109726030 -67248110 + L1M4 LINE L1 821 972 -5570 623 120 120 8 chrX 109726035 109726168 -67247972 + L1M4 LINE L1 4651 4798 -1348 699 200 0 22 chrX 109726170 109726305 -67247835 + FLAM_C SINE Alu 4 135 -8 1573 120 3 22 chrX 109726319 109726696 -67247444 + MLT2A2 LTR ERVL 6 453 0 816 172 0 46 chrX 109726696 109726847 -67247293 + AluJb SINE Alu 138 281 -31 249 33 0 0 chrX 109726848 109726878 -67247262 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1324 249 60 7 chrX 109726880 109727314 -67246826 + L1M4 LINE L1 4787 5243 -903 2152 101 16 3 chrX 109727321 109727627 -67246513 - MER41A LTR ERV1 -7 547 238 2684 244 11 8 chrX 109727627 109728392 -67245748 + L1PB1 LINE L1 3087 3853 -2293 5952 155 12 7 chrX 109728492 109730097 -67244043 + L1PB1 LINE L1 4536 6146 -5 1143 58 0 26 chrX 109730380 109730535 -67243605 - L1PA5 LINE L1 -562 5592 5442 4433 48 2 4 chrX 109730535 109731092 -67243048 + L1PA5 LINE L1 5596 6151 -3 2569 256 55 8 chrX 109731093 109732074 -67242066 + L1 LINE L1 1971 2992 -3154 4629 158 1 23 chrX 109782076 109782945 -67191195 + L1P LINE L1 4221 5070 -1076 229 278 113 9 chrX 109782961 109783076 -67191064 - MLT1C LTR MaLR -143 324 198 * 540 216 26 0 chrX 109783074 109783190 -67190950 - THE1B LTR MaLR -48 316 198 6289 93 9 3 chrX 109783193 109784262 -67189878 + L1PA10 LINE L1 5079 6152 -16 25 0 0 0 chrX 109784262 109784287 -67189853 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chrX 109784600 109784623 -67189517 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 210 284 21 95 chrX 109785114 109785304 -67188836 - L2 LINE L2 -2 3311 3136 374 297 29 22 chrX 109786498 109786636 -67187504 - MIR SINE MIR 0 262 124 1397 249 84 19 chrX 109787299 109787773 -67186367 - MLT1D LTR MaLR 0 505 1 250 288 148 41 chrX 109788023 109788266 -67185874 + L2 LINE L2 2828 3096 -176 2123 203 38 38 chrX 109788375 109788872 -67185268 + MLT1D LTR MaLR 1 497 -8 5144 161 6 10 chrX 109789093 109789991 -67184149 - L1MA4 LINE L1 -6 6294 5401 464 120 0 0 chrX 109789988 109790063 -67184077 + L1M LINE L1 5336 5410 -890 * 302 288 0 0 chrX 109791090 109791156 -67182984 - L2 LINE L2 -6 3307 3242 306 223 107 18 chrX 109791382 109791494 -67182646 + L1ME4a LINE L1 5799 5920 -201 22 88 0 0 chrX 109791627 109791684 -67182456 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrX 109792139 109792161 -67181979 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chrX 109792168 109792218 -67181922 + AT_rich Low_complexity Low_complexity 1 50 0 1519 155 0 4 chrX 109792402 109792634 -67181506 + AluSx SINE Alu 24 254 -58 2206 116 0 0 chrX 109792673 109792974 -67181166 + AluSx SINE Alu 2 302 -10 33 56 0 0 chrX 109793203 109793257 -67180883 + AT_rich Low_complexity Low_complexity 1 54 0 392 298 63 6 chrX 109794381 109794539 -67179601 - MIR SINE MIR -50 212 46 189 250 83 0 chrX 109794606 109794654 -67179486 + L2 LINE L2 3205 3256 -16 2686 173 59 20 chrX 109794674 109795235 -67178905 + L1MB7 LINE L1 5379 5961 -223 1390 217 120 3 chrX 109795265 109795718 -67178422 + L1M4 LINE L1 5213 5725 -459 2349 169 62 8 chrX 109795721 109796235 -67177905 + L1MB7 LINE L1 5624 6165 -19 14968 96 12 2 chrX 109796498 109799281 -67174859 - L1PA7 LINE L1 -225 5929 3116 4337 77 14 2 chrX 109799279 109800146 -67173994 + L1PA7 LINE L1 4959 5832 -322 * 607 61 0 0 chrX 109800146 109800224 -67173916 + L1PA7 LINE L1 6072 6153 -1 410 143 26 0 chrX 109800834 109800911 -67173229 - L1MB8 LINE L1 -5 6173 6095 4930 205 17 9 chrX 109801507 109803316 -67170824 - L1PA15 LINE L1 -1 6164 4222 502 269 25 5 chrX 109803339 109803536 -67170604 - L1M4 LINE L1 -3694 2452 2252 1917 164 64 3 chrX 109803538 109803928 -67170212 + L1MA9 LINE L1 5898 6311 -1 22 56 0 0 chrX 109804379 109804415 -67169725 + AT_rich Low_complexity Low_complexity 1 36 0 2467 178 2 0 chrX 109804702 109805118 -67169022 - MER47B DNA MER2_type 0 418 2 22379 112 5 6 chrX 109806129 109809552 -67164588 + L1P LINE L1 1556 4975 -1171 275 310 10 50 chrX 109810610 109810710 -67163430 - MIR3 SINE MIR -28 180 85 3321 37 0 0 chrX 109810721 109811123 -67163017 - L1PA2 LINE L1 0 6155 5754 290 396 43 14 chrX 109811263 109811402 -67162738 + L2 LINE L2 3125 3267 -5 1346 289 35 26 chrX 109811428 109811919 -67162221 + L1MC4a LINE L1 5416 5910 -1898 369 318 81 64 chrX 109812043 109812313 -67161827 + L1MC4a LINE L1 6100 6381 -1427 2801 70 11 5 chrX 109812313 109812685 -67161455 + L1PA7 LINE L1 5778 6151 -3 369 318 81 64 chrX 109812685 109812820 -67161320 + L1MC4a LINE L1 6381 6512 -1296 1903 130 17 14 chrX 109812822 109813135 -67161005 + AluSx SINE Alu 1 314 0 1016 195 30 24 chrX 109813226 109813470 -67160670 + L1MA9 LINE L1 5987 6234 -66 617 143 38 38 chrX 109813475 109813608 -67160532 + L1MA9 LINE L1 6180 6312 0 915 201 54 72 chrX 109813640 109813862 -67160278 + L1MC5 LINE L1 6878 7094 -867 2082 130 0 3 chrX 109813862 109814162 -67159978 + AluSq SINE Alu 1 299 -14 915 201 54 72 chrX 109814162 109814272 -67159868 + L1MC5 LINE L1 7094 7204 -757 185 282 84 0 chrX 109814296 109814367 -67159773 + MIR SINE MIR 181 257 -5 649 248 81 0 chrX 109814698 109814896 -67159244 + L1MC5 LINE L1 7688 7901 -60 505 318 119 0 chrX 109815523 109815674 -67158466 - MER91A DNA MER1_type -27 169 1 1124 209 0 14 chrX 109815875 109816086 -67158054 + MER20 DNA MER1_type 12 219 0 1874 156 21 44 chrX 109816768 109817152 -67156988 + THE1C LTR MaLR 1 375 0 381 352 80 8 chrX 109817443 109817693 -67156447 + HAL1b LINE L1 458 725 -623 1945 132 40 9 chrX 109817754 109818102 -67156038 + L1MA5 LINE L1 5936 6294 -6 341 340 76 52 chrX 109818223 109818721 -67155419 - L2 LINE L2 -133 3180 2661 226 279 84 59 chrX 109818813 109818990 -67155150 + L1M4 LINE L1 3652 3823 -2323 24239 51 3 0 chrX 109818990 109822875 -67151265 + L1PA4 LINE L1 2274 6155 0 226 279 84 59 chrX 109822875 109823055 -67151085 + L1M4 LINE L1 3823 4018 -2128 415 146 61 0 chrX 109823119 109823201 -67150939 + L1MA5 LINE L1 6203 6289 -11 28 0 0 0 chrX 109823201 109823229 -67150911 + AT_rich Low_complexity Low_complexity 1 28 0 425 246 70 49 chrX 109823248 109823390 -67150750 - MIR SINE MIR -9 253 109 447 290 120 49 chrX 109823514 109824048 -67150092 + L1M4 LINE L1 4459 5030 -1116 256 257 0 43 chrX 109824237 109824307 -67149833 + MIR SINE MIR 74 140 -68 625 157 93 0 chrX 109824591 109824699 -67149441 + FLAM_C SINE Alu 3 120 -13 23 33 0 0 chrX 109824977 109825007 -67149133 + AT_rich Low_complexity Low_complexity 1 30 0 500 286 81 28 chrX 109825443 109825691 -67148449 - MIR SINE MIR -1 261 1 2347 147 45 24 chrX 109825721 109826144 -67147996 + MER61C LTR ERV1 3 434 0 7613 116 68 121 chrX 109826158 109827875 -67146265 + MER61C-int LTR ERV1 14 1639 -3578 * 20573 107 25 19 chrX 109827863 109831069 -67143071 + MER61C-int LTR ERV1 1980 5206 -11 2137 137 112 8 chrX 109831081 109831474 -67142666 + MER61C LTR ERV1 1 434 0 345 75 0 0 chrX 109831620 109831673 -67142467 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chrX 109831827 109831850 -67142290 + AT_rich Low_complexity Low_complexity 1 23 0 323 223 21 32 chrX 109832113 109832207 -67141933 - MIR SINE MIR -50 212 120 10016 29 0 0 chrX 109832259 109833447 -67140693 - L1PA3 LINE L1 -1511 4635 3448 7861 17 0 0 chrX 109833447 109834968 -67139172 + L1PA3 LINE L1 4635 6155 0 467 301 146 18 chrX 109835358 109835584 -67138556 + MIR SINE MIR 8 262 0 246 237 127 42 chrX 109836016 109836134 -67138006 + MIR SINE MIR 105 232 -30 14486 133 27 5 chrX 109836357 109838719 -67135421 + Tigger1 DNA MER2_type 4 2418 0 1916 132 0 0 chrX 109838920 109839215 -67134925 + AluSx SINE Alu 11 305 0 506 283 75 5 chrX 109839227 109839414 -67134726 - MIR SINE MIR -10 252 53 575 313 122 9 chrX 109840618 109840848 -67133292 - MIR SINE MIR -1 261 6 19102 182 46 17 chrX 109840989 109843195 -67130945 + L1MA2 LINE L1 12 2153 -5412 3829 26 2 2 chrX 109843195 109843653 -67130487 + L1PA4 LINE L1 5696 6153 -2 19102 182 46 17 chrX 109843653 109844062 -67130078 + L1MA2 LINE L1 2153 2549 -5016 2325 93 0 0 chrX 109844062 109844364 -67129776 + AluY SINE Alu 1 302 -9 19102 182 46 17 chrX 109844364 109845682 -67128458 + L1MA2 LINE L1 2549 3828 -3737 3323 74 41 0 chrX 109845682 109845721 -67128419 - MLT2A2 LTR ERVL 0 453 417 302 24 48 0 chrX 109845721 109845763 -67128377 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 3323 74 41 0 chrX 109845763 109846158 -67127982 - MLT2A2 LTR ERVL -36 417 1 19102 182 46 17 chrX 109846158 109846573 -67127567 + L1MA2 LINE L1 3828 4230 -3335 1386 174 75 11 chrX 109846573 109846855 -67127285 + AluJb SINE Alu 3 302 -10 19102 182 46 17 chrX 109846855 109847463 -67126677 + L1MA2 LINE L1 4230 5114 -2451 380 202 10 19 chrX 109847622 109847726 -67126414 + L1M LINE L1 5319 5421 -884 1357 287 15 30 chrX 109848061 109848597 -67125543 + L1 LINE L1 3204 3731 -2415 * 5821 131 33 21 chrX 109848585 109849635 -67124505 + L1MA2 LINE L1 6642 7678 -45 2385 149 3 3 chrX 109849635 109849997 -67124143 + THE1B LTR MaLR 3 364 0 9849 120 30 39 chrX 109849997 109851592 -67122548 + THE1B-int LTR MaLR 1 1580 0 2635 113 0 0 chrX 109851592 109851956 -67122184 + THE1B LTR MaLR 1 364 0 5821 131 33 21 chrX 109851956 109851986 -67122154 + L1MA2 LINE L1 7677 7722 -1 228 333 79 53 chrX 109852681 109852870 -67121270 + L2 LINE L2 2752 2945 -369 * 553 299 51 15 chrX 109852868 109853065 -67121075 - L2 LINE L2 -5 3308 3105 314 287 109 52 chrX 109853137 109853274 -67120866 + L2 LINE L2 3008 3165 -148 2066 132 0 7 chrX 109853274 109853577 -67120563 + AluSx SINE Alu 1 301 -11 314 287 109 52 chrX 109853577 109853669 -67120471 + L2 LINE L2 3165 3250 -63 525 233 173 7 chrX 109854296 109854446 -67119694 - MER5A DNA MER1_type -6 183 9 806 154 9 164 chrX 109854455 109854846 -67119294 + MER33 DNA MER1_type 1 363 0 3083 151 19 19 chrX 109854995 109855752 -67118388 - L1P5 LINE L1 -367 5789 5026 2492 187 5 38 chrX 109855754 109856338 -67117802 + L1 LINE L1 3477 4041 -2105 2974 195 48 1 chrX 109856344 109856991 -67117149 + L1 LINE L1 4355 5031 -1115 818 185 62 0 chrX 109857224 109857402 -67116738 + MER53 DNA DNA 1 189 0 21 82 0 0 chrX 109857939 109857988 -67116152 + AT_rich Low_complexity Low_complexity 1 49 0 25 51 0 0 chrX 109858793 109858832 -67115308 + AT_rich Low_complexity Low_complexity 1 39 0 194 219 16 0 chrX 109858865 109858929 -67115211 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 1894 166 2 44 chrX 109859123 109859534 -67114606 - L1MA9 LINE L1 -1 6311 5918 1964 119 95 24 chrX 109859534 109859871 -67114269 - THE1B LTR MaLR 0 364 4 9175 108 26 14 chrX 109859874 109861201 -67112939 - THE1B-int LTR MaLR 0 1580 237 1631 216 14 22 chrX 109861199 109861570 -67112570 - L1M3e LINE L1 -6658 372 5 * 246 301 11 6 chrX 109861579 109861668 -67112472 - MER21B LTR ERV1 -500 431 289 719 168 32 0 chrX 109861737 109861892 -67112248 + L1MA5 LINE L1 1816 1975 -4814 * 3057 168 30 17 chrX 109861862 109862388 -67111752 + L1MA5 LINE L1 5771 6289 -653 2251 131 0 0 chrX 109862388 109862700 -67111440 + AluSx SINE Alu 1 312 0 3057 168 30 17 chrX 109862700 109863210 -67110930 + L1MA5 LINE L1 6289 6942 0 236 30 30 0 chrX 109863216 109863249 -67110891 + (TA)n Simple_repeat Simple_repeat 2 35 0 801 333 27 47 chrX 109863332 109863779 -67110361 - L2 LINE L2 -1 3312 2875 1610 244 98 74 chrX 109863832 109864672 -67109468 + L1M3e LINE L1 1 860 -6170 507 247 7 34 chrX 109864672 109864818 -67109322 + L1M3e LINE L1 1779 1920 -5110 1410 267 35 22 chrX 109864824 109865375 -67108765 + L1ME3A LINE L1 986 1543 -4841 1480 244 42 36 chrX 109865447 109865931 -67108209 + L1ME3A LINE L1 1964 2463 -3919 1954 180 9 0 chrX 109865931 109866276 -67107864 + MER7A DNA MER2_type 1 346 0 1480 244 42 36 chrX 109866276 109866623 -67107517 + L1ME3A LINE L1 2463 2806 -3576 * 7173 233 89 6 chrX 109866617 109868941 -67105199 + L1ME3A LINE L1 3041 5559 -833 1092 165 33 0 chrX 109868940 109869152 -67104988 + L1MA8 LINE L1 3761 3979 -2167 * 1648 135 8 77 chrX 109869152 109869521 -67104619 - MER4A LTR ERV1 0 664 263 562 125 31 10 chrX 109869521 109869617 -67104523 - MER4A LTR ERV1 -566 98 1 6321 179 25 13 chrX 109869618 109870896 -67103244 + L1MA8 LINE L1 3978 5291 -1000 2428 94 0 0 chrX 109870896 109871205 -67102935 + AluSc SINE Alu 1 309 0 6321 179 25 13 chrX 109871205 109872211 -67101929 + L1MA8 LINE L1 5291 6283 -8 446 151 32 0 chrX 109872445 109872538 -67101602 + L1MA4 LINE L1 6200 6295 -5 742 269 50 15 chrX 109872553 109872891 -67101249 + L1ME3A LINE L1 6044 6393 -13 297 183 0 0 chrX 109873266 109873326 -67100814 + (TA)n Simple_repeat Simple_repeat 1 60 0 299 286 92 76 chrX 109873813 109873917 -67100223 - MER5A DNA MER1_type 0 189 79 1433 155 36 4 chrX 109873917 109874194 -67099946 + L1MA4A LINE L1 6016 6301 -2 299 286 92 76 chrX 109874194 109874274 -67099866 - MER5A DNA MER1_type -110 79 2 859 184 66 20 chrX 109874657 109874853 -67099287 - MER3 DNA MER1_type -4 205 1 467 176 22 0 chrX 109874924 109875015 -67099125 + MLT1A1 LTR MaLR 273 365 0 296 211 0 18 chrX 109875064 109875121 -67099019 + L1M3c LINE L1 1 56 -6085 1249 189 53 4 chrX 109875121 109875364 -67098776 + MLT1A1-int LTR MaLR 305 559 -1176 1502 280 25 9 chrX 109875395 109875831 -67098309 - L1M3c LINE L1 -5698 443 1 531 178 56 0 chrX 109875831 109875938 -67098202 - MLT-int LTR MaLR -1421 314 202 590 83 0 0 chrX 109875957 109876041 -67098099 - AluSg/x SINE Alu -16 294 211 368 121 0 0 chrX 109876043 109876101 -67098039 - MLT-int LTR MaLR -1537 198 141 * 465 128 13 0 chrX 109876093 109876171 -67097969 - MLT1A1-int LTR MaLR -1656 79 1 1389 189 22 124 chrX 109876173 109876576 -67097564 - MLT1A1 LTR MaLR -3 362 1 448 248 35 14 chrX 109876591 109876732 -67097408 - L1MC5 LINE L1 -91 7870 7727 240 115 115 16 chrX 109876746 109876807 -67097333 - L1MC5 LINE L1 -285 7676 7610 1025 255 68 69 chrX 109876867 109877649 -67096491 - L1MC5 LINE L1 -758 7203 6414 4058 186 32 63 chrX 109877729 109879130 -67095010 - L1MA10 LINE L1 -2 6332 4974 454 200 0 0 chrX 109879130 109879205 -67094935 + Tigger5 DNA MER2_type 2 76 -2247 368 232 0 0 chrX 109879209 109879278 -67094862 - Tigger5 DNA MER2_type -5 2318 2250 433 197 13 0 chrX 109879281 109879357 -67094783 + Tigger5 DNA MER2_type 2247 2323 0 480 239 5 0 chrX 109879374 109879487 -67094653 - L1 LINE L1 -1174 4972 4855 1228 226 26 68 chrX 109879498 109879879 -67094261 + MLT1A1 LTR MaLR 1 365 0 6955 213 58 42 chrX 109879879 109881587 -67092553 + MLT1A1-int LTR MaLR 1 1735 0 854 221 10 41 chrX 109881590 109881785 -67092355 + MLT1A1 LTR MaLR 4 192 -173 * 894 275 5 22 chrX 109881780 109882002 -67092138 + MLT1A1 LTR MaLR 148 365 0 2148 115 0 0 chrX 109882174 109882461 -67091679 + AluSx SINE Alu 1 287 -25 207 0 0 0 chrX 109882465 109882488 -67091652 + (CTA)n Simple_repeat Simple_repeat 1 23 0 570 333 109 6 chrX 109882488 109882957 -67091183 + HAL1 LINE L1 1083 1599 -908 481 283 61 77 chrX 109883050 109883297 -67090843 - LTR16A LTR ERVL -103 347 105 2088 136 48 20 chrX 109883358 109883712 -67090428 - THE1B LTR MaLR 0 364 1 628 74 0 0 chrX 109883712 109883807 -67090333 - THE1B-int LTR MaLR 0 1580 1486 * 6750 96 10 1 chrX 109883804 109884722 -67089418 - THE1B-int LTR MaLR -654 926 1 1958 133 54 34 chrX 109884722 109885075 -67089065 - THE1B LTR MaLR 0 364 5 540 359 40 25 chrX 109885201 109885605 -67088535 - HERV16 LTR ERVL -387 5377 4968 2710 29 0 0 chrX 109885717 109886028 -67088112 - AluYa5 SINE Alu 0 311 1 467 298 31 43 chrX 109886087 109886248 -67087892 - HERV16 LTR ERVL -4836 160 2 2495 206 61 60 chrX 109886282 109886952 -67087188 + L1ME2 LINE L1 5410 6083 -81 6687 141 45 14 chrX 109886952 109888145 -67085995 - Tigger3b DNA MER2_type -1 1230 1 2495 206 61 60 chrX 109888145 109888212 -67085928 + L1ME2 LINE L1 6083 6148 -16 237 65 0 0 chrX 109888464 109888495 -67085645 + (T)n Simple_repeat Simple_repeat 1 31 0 2358 98 0 0 chrX 109889367 109889672 -67084468 - AluSg SINE Alu -5 305 1 1250 181 45 0 chrX 109890711 109890977 -67083163 - L1MC3 LINE L1 0 7785 7508 1872 245 22 5 chrX 109891008 109891559 -67082581 - L1 LINE L1 -2886 3260 2701 2979 265 92 24 chrX 109891567 109892221 -67081919 - L1M4 LINE L1 -1744 4402 3794 2117 104 45 0 chrX 109892221 109892508 -67081632 - AluSx SINE Alu -12 300 1 2979 265 92 24 chrX 109892508 109893124 -67081016 - L1M4 LINE L1 -2352 3794 3045 184 308 100 25 chrX 109893791 109893911 -67080229 - L2 LINE L2 -792 2522 2394 212 307 30 59 chrX 109894018 109894119 -67080021 - L2 LINE L2 -2 3270 3173 378 221 32 11 chrX 109894407 109894502 -67079638 - MIR SINE MIR -48 214 118 869 269 83 23 chrX 109894506 109894857 -67079283 - MER31A LTR ERV1 -2 541 103 * 2980 198 21 3 chrX 109894853 109895424 -67078716 + MER34C LTR ERV1 5 585 0 629 231 15 0 chrX 109895424 109895548 -67078592 - MER31B LTR ERV1 -336 130 5 448 256 89 30 chrX 109895697 109895865 -67078275 + MER5B DNA MER1_type 1 178 0 943 199 0 0 chrX 109895949 109896110 -67078030 + FRAM SINE Alu 1 155 -21 2654 200 63 38 chrX 109896161 109896846 -67077294 - MER67C LTR ERV1 0 710 9 3012 155 148 3 chrX 109897712 109898298 -67075842 - LTR51 LTR ERV1 0 671 1 242 246 10 42 chrX 109898468 109898564 -67075576 + MIR3 SINE MIR 72 165 -43 * 252 263 11 63 chrX 109898563 109898658 -67075482 + L3b LINE CR1 1294 1383 -200 1448 202 27 75 chrX 109899475 109899998 -67074142 - MER34B LTR ERV1 -2 540 5 794 274 230 48 chrX 109900349 109900977 -67073163 - L3 LINE CR1 -3 1574 817 2413 197 42 57 chrX 109900977 109901622 -67072518 + MER92B LTR ERV1 2 636 0 794 274 230 48 chrX 109901622 109901657 -67072483 - L3 LINE CR1 -760 817 790 4682 86 19 153 chrX 109901714 109902663 -67071477 + LTR12 LTR ERV1 5 826 0 2362 90 3 0 chrX 109902663 109902984 -67071156 + PABL_A LTR ERV1 339 660 0 239 232 0 18 chrX 109903027 109903083 -67071057 + CT-rich Low_complexity Low_complexity 4 58 0 2062 154 0 0 chrX 109904354 109904659 -67069481 - AluJb SINE Alu -5 307 3 550 191 0 0 chrX 109904773 109904862 -67069278 - Tigger7 DNA MER2_type 0 2587 2499 5091 174 22 15 chrX 109904883 109905954 -67068186 - L1 LINE L1 -1007 5139 4061 22706 98 14 1 chrX 109906260 109908710 -67065430 - L1PA7 LINE L1 0 6154 3633 240 35 0 0 chrX 109908710 109908739 -67065401 + (TTG)n Simple_repeat Simple_repeat 3 31 0 22706 98 14 1 chrX 109908739 109910437 -67063703 - L1PA7 LINE L1 -2521 3633 1959 823 218 18 0 chrX 109910565 109910730 -67063410 + AluJb SINE Alu 109 276 -36 620 272 36 10 chrX 109912321 109912516 -67061624 - L1MC/D LINE L1 -2055 5753 5554 579 303 144 0 chrX 109913025 109913213 -67060927 - MIR SINE MIR 0 262 48 451 304 13 19 chrX 109913269 109913427 -67060713 + MIR SINE MIR 81 237 -25 227 247 178 0 chrX 109913814 109913887 -67060253 - L1MD2 LINE L1 -134 6225 6140 43954 38 3 1 chrX 109914663 109920793 -67053347 + L1PA3 LINE L1 18 6155 0 377 273 66 16 chrX 109920947 109921130 -67053010 + L1MEd LINE L1 974 1165 -4954 2397 70 0 13 chrX 109921175 109921475 -67052665 + AluY SINE Alu 4 299 -12 699 155 42 0 chrX 109921480 109921622 -67052518 + L1MA6 LINE L1 6153 6300 0 1964 187 31 28 chrX 109921632 109922054 -67052086 + L1MA8 LINE L1 5428 5850 -441 * 23173 115 11 44 chrX 109922046 109928465 -67045675 + L1PA7 LINE L1 12 6152 -2 22 0 0 0 chrX 109928580 109928602 -67045538 + AT_rich Low_complexity Low_complexity 1 22 0 1785 181 10 7 chrX 109928718 109929027 -67045113 + AluJb SINE Alu 1 310 -2 24 67 0 0 chrX 109930030 109930075 -67044065 + AT_rich Low_complexity Low_complexity 1 45 0 2448 147 20 13 chrX 109930093 109930543 -67043597 + L1MA7 LINE L1 5814 6266 -25 195 42 0 0 chrX 109930543 109930567 -67043573 + (TA)n Simple_repeat Simple_repeat 1 24 0 270 369 66 11 chrX 109930593 109930956 -67043184 + HAL1 LINE L1 1266 1648 -859 678 224 52 6 chrX 109931160 109931334 -67042806 - MER58A DNA MER1_type -1 223 42 395 330 85 70 chrX 109931705 109931975 -67042165 + L2 LINE L2 2999 3272 0 522 241 48 35 chrX 109932065 109932210 -67041930 - L2 LINE L2 0 3313 3167 354 268 21 55 chrX 109932485 109932658 -67041482 + MIR SINE MIR 6 133 -75 432 200 0 49 chrX 109932716 109932901 -67041239 + (TAA)n Simple_repeat Simple_repeat 1 176 0 739 128 101 13 chrX 109933294 109933452 -67040688 + LTR7 LTR ERV1 1 218 -232 18536 97 21 16 chrX 109933552 109936526 -67037614 + HERVH LTR ERV1 1 2987 -4726 827 149 20 0 chrX 109936520 109936668 -67037472 + HERVH LTR ERV1 3140 3290 -4423 * 3131 106 20 2 chrX 109936658 109937151 -67036989 + HERVH LTR ERV1 3492 3993 -3720 * 3921 159 8 6 chrX 109937147 109937818 -67036322 + HERVH LTR ERV1 4478 5149 -2564 1308 129 18 5 chrX 109937819 109938036 -67036104 + HERVH LTR ERV1 5600 5819 -1894 2470 70 45 3 chrX 109938036 109938410 -67035730 + HERVH LTR ERV1 7324 7713 0 2022 116 87 66 chrX 109938410 109938849 -67035291 + LTR7 LTR ERV1 1 448 -2 572 231 18 28 chrX 109938895 109939125 -67035015 - L1MCa LINE L1 -3957 2469 2362 1265 263 42 20 chrX 109939403 109939803 -67034337 - MLT1I LTR MaLR 0 409 1 209 57 29 0 chrX 109939814 109939849 -67034291 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 730 290 50 8 chrX 109940259 109940497 -67033643 - MIR SINE MIR -3 259 12 635 286 6 22 chrX 109940555 109940720 -67033420 + MIR3 SINE MIR 30 196 -12 3527 14 34 2 chrX 109940720 109941133 -67033007 + L1PA4 LINE L1 5714 6139 -16 216 0 0 0 chrX 109941133 109941157 -67032983 + (TA)n Simple_repeat Simple_repeat 1 24 0 635 286 6 22 chrX 109941157 109941172 -67032968 + MIR3 SINE MIR 194 208 0 24 0 0 0 chrX 109941425 109941449 -67032691 + AT_rich Low_complexity Low_complexity 1 24 0 193 151 0 151 chrX 109941838 109941911 -67032229 - L2 LINE L2 -599 2715 2654 3777 246 55 9 chrX 109942390 109943698 -67030442 + L1M1 LINE L1 1 2069 -5496 * 11389 167 32 23 chrX 109943697 109944114 -67030026 + L1M1 LINE L1 3001 3413 -4152 1935 164 27 19 chrX 109944114 109944486 -67029654 - THE1C LTR MaLR 0 375 1 11389 167 32 23 chrX 109944486 109945926 -67028214 + L1M1 LINE L1 3413 4839 -2726 373 42 0 0 chrX 109945926 109945974 -67028166 - MADE1 DNA Mariner -1 79 32 11389 167 32 23 chrX 109945974 109946152 -67027988 + L1M1 LINE L1 4839 5014 -2551 2231 107 16 7 chrX 109946152 109946432 -67027708 + AluSq SINE Alu 1 277 -36 186 43 0 0 chrX 109946432 109946455 -67027685 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 537 16 0 0 chrX 109946462 109946524 -67027616 + (GGAAA)n Simple_repeat Simple_repeat 4 65 0 2231 107 16 7 chrX 109946524 109946544 -67027596 + AluSq SINE Alu 282 312 -1 11389 167 32 23 chrX 109946544 109947657 -67026483 + L1M1 LINE L1 5014 6229 -1336 525 93 0 0 chrX 109947658 109947733 -67026407 - L1P LINE L1 -1573 4573 4499 216 67 0 0 chrX 109948924 109948954 -67025186 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 327 293 36 48 chrX 109949047 109949214 -67024926 - L2 LINE L2 -2 3311 3147 1277 204 65 60 chrX 109949220 109949603 -67024537 - MLT1B LTR MaLR -5 385 1 217 354 127 14 chrX 109949675 109949859 -67024281 - L2 LINE L2 -209 3063 2901 2042 138 80 41 chrX 109949859 109950271 -67023869 + MSTA LTR MaLR 1 428 0 217 354 127 14 chrX 109950271 109950433 -67023707 - L2 LINE L2 -371 2901 2673 2634 141 7 5 chrX 109950765 109951184 -67022956 - L1PA15 LINE L1 -7 6809 6390 5821 112 4 9 chrX 109951187 109952119 -67022021 - L1MA1 LINE L1 0 6302 5375 4264 174 13 10 chrX 109952114 109953079 -67021061 - L1PA15 LINE L1 -399 6417 5451 * 2257 111 0 7 chrX 109953079 109953385 -67020755 - AluSx SINE Alu -8 304 1 4264 174 13 10 chrX 109953385 109953808 -67020332 - L1PA15 LINE L1 -1365 5451 5030 4399 248 27 23 chrX 109953838 109956824 -67017316 - L1PA15 LINE L1 -3578 3219 4 442 258 60 44 chrX 109956839 109957021 -67017119 - MIR SINE MIR -66 196 12 6115 226 37 4 chrX 109958454 109959792 -67014348 + L1M2 LINE L1 7 1388 -5461 2951 134 12 48 chrX 109959802 109960405 -67013735 + L1MA4A LINE L1 5258 5838 -465 * 5454 77 19 0 chrX 109960397 109961247 -67012893 - L1PA7 LINE L1 0 6154 5232 861 47 0 0 chrX 109961246 109961352 -67012788 - L1PA7 LINE L1 -1970 4176 4071 * 11236 96 5 12 chrX 109961350 109963105 -67011035 + L1PA7 LINE L1 2330 4071 -2075 2571 135 21 27 chrX 109963105 109963582 -67010558 + L1MA4A LINE L1 5823 6301 -2 380 281 36 51 chrX 109963582 109963778 -67010362 + MIR SINE MIR 62 254 -8 622 204 152 37 chrX 109964097 109964288 -67009852 + MIR SINE MIR 50 262 0 26 30 0 0 chrX 109964952 109964985 -67009155 + AT_rich Low_complexity Low_complexity 1 33 0 798 321 38 13 chrX 109965585 109965980 -67008160 + L1MEd LINE L1 11 415 -5704 198 0 0 0 chrX 109966005 109966027 -67008113 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 3262 206 20 0 chrX 109966230 109966935 -67007205 - L1 LINE L1 -1814 4332 3614 1809 104 11 14 chrX 109966935 109967213 -67006927 + L1PB1 LINE L1 5870 6148 -3 30 0 0 0 chrX 109967213 109967243 -67006897 + AT_rich Low_complexity Low_complexity 1 30 0 694 188 99 29 chrX 109967314 109967632 -67006508 - Tigger3(Golem) DNA MER2_type -1 3028 2 695 239 95 107 chrX 109967632 109968063 -67006077 + L1MEd LINE L1 784 1209 -4910 1444 231 96 31 chrX 109968064 109968574 -67005566 - L1MC4a LINE L1 -267 7541 6999 496 175 24 90 chrX 109968585 109968621 -67005519 - L1MD3 LINE L1 -1 7994 7957 5237 120 18 20 chrX 109968621 109969968 -67004172 - L1PA16 LINE L1 0 6166 4790 257 0 30 0 chrX 109969968 109970001 -67004139 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 5237 120 18 20 chrX 109970001 109970631 -67003509 - L1PA16 LINE L1 -1376 4790 4160 496 175 24 90 chrX 109970631 109970805 -67003335 - L1MD3 LINE L1 -38 7957 7798 529 218 30 45 chrX 109970854 109970987 -67003153 - FLAM_A SINE Alu -1 132 2 273 301 43 0 chrX 109971022 109971115 -67003025 - L1MD2 LINE L1 -193 6166 6070 1054 237 129 16 chrX 109971117 109971505 -67002635 - L1MD3 LINE L1 -945 7050 6619 333 194 0 118 chrX 109971505 109971598 -67002542 - L1MC4 LINE L1 -1345 6697 6616 303 137 0 0 chrX 109971622 109971673 -67002467 - L1MC4a LINE L1 -1354 6454 6404 316 291 171 24 chrX 109972537 109972667 -67001473 + MIR SINE MIR 13 122 -140 1118 250 71 44 chrX 109972667 109973103 -67001037 + MLT1J2 LTR MaLR 3 450 0 316 291 171 24 chrX 109973103 109973182 -67000958 + MIR SINE MIR 122 253 -9 24 32 0 0 chrX 109973356 109973387 -67000753 + AT_rich Low_complexity Low_complexity 1 31 0 792 157 17 81 chrX 109974295 109974370 -66999770 + MER5A DNA MER1_type 1 79 -110 2658 39 0 0 chrX 109974370 109974678 -66999462 + AluY SINE Alu 1 308 -3 792 157 17 81 chrX 109974678 109974774 -66999366 + MER5A DNA MER1_type 79 161 -28 6101 115 28 9 chrX 109974879 109975908 -66998232 - L1MA3 LINE L1 -3 7721 6673 2468 115 11 6 chrX 109975923 109976289 -66997851 + THE1C LTR MaLR 1 368 -7 2820 89 5 17 chrX 109976290 109976696 -66997444 + THE1C-int LTR MaLR 1 401 -1179 3700 94 2 4 chrX 109976706 109977204 -66996936 + THE1C-int LTR MaLR 1084 1580 0 2665 110 0 3 chrX 109977206 109977580 -66996560 + THE1C LTR MaLR 3 375 0 732 159 0 0 chrX 109977580 109977712 -66996428 - L1MA3 LINE L1 -903 6662 6531 318 271 47 0 chrX 109977712 109977797 -66996343 - L1MC4 LINE L1 -1339 6703 6615 363 192 0 0 chrX 109977797 109977875 -66996265 + (CA)n Simple_repeat Simple_repeat 1 78 0 12592 144 40 7 chrX 109977916 109978943 -66995197 - L1MA3 LINE L1 -4614 2951 1959 2316 106 0 0 chrX 109978943 109979246 -66994894 + AluSq SINE Alu 1 303 -10 12592 144 40 7 chrX 109979246 109980295 -66993845 - L1MA3 LINE L1 -5606 1959 808 457 269 62 58 chrX 109980386 109980643 -66993497 - MIR SINE MIR 0 262 5 5270 117 55 14 chrX 109982849 109984422 -66989718 + L1PA16 LINE L1 4546 6156 -10 208 284 148 0 chrX 109984844 109984925 -66989215 + L2 LINE L2 3168 3260 -12 243 0 0 0 chrX 109984926 109984953 -66989187 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 24 32 0 0 chrX 109985286 109985317 -66988823 + AT_rich Low_complexity Low_complexity 1 31 0 276 311 44 48 chrX 109986863 109986958 -66987182 + L2 LINE L2 2230 2324 -990 1777 214 19 3 chrX 109986958 109987317 -66986823 + MLT1A1 LTR MaLR 1 365 0 276 311 44 48 chrX 109987317 109987427 -66986713 + L2 LINE L2 2324 2434 -880 2762 107 5 27 chrX 109987529 109987970 -66986170 - MER57B LTR ERV1 -3 431 1 403 316 45 98 chrX 109988073 109988430 -66985710 + L2 LINE L2 2935 3272 0 2169 147 15 61 chrX 109988543 109988952 -66985188 - MLT1B LTR MaLR 0 390 1 354 141 16 0 chrX 109990024 109990088 -66984052 - L1MA8 LINE L1 -173 6118 6054 452 172 0 11 chrX 109990090 109990183 -66983957 + L1MA8 LINE L1 6187 6278 -13 8928 156 38 18 chrX 109990192 109992997 -66981143 - L1MA4A LINE L1 -11 6292 3429 27 29 0 0 chrX 109994148 109994182 -66979958 + AT_rich Low_complexity Low_complexity 1 34 0 2948 178 33 104 chrX 109994197 109994625 -66979515 + L1MA7 LINE L1 4864 5321 -970 351 0 0 0 chrX 109994625 109994664 -66979476 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2948 178 33 104 chrX 109994664 109995065 -66979075 + L1MA7 LINE L1 5321 5749 -542 4284 127 14 0 chrX 109995065 109995760 -66978380 + L1MA4A LINE L1 5593 6297 -6 2948 178 33 104 chrX 109995760 109995863 -66978277 + L1MA7 LINE L1 5749 5858 -433 14012 144 27 5 chrX 109995863 109998228 -66975912 - Tigger1 DNA MER2_type 0 2418 2 2948 178 33 104 chrX 109998228 109998850 -66975290 + L1MA7 LINE L1 5858 6279 -12 364 218 66 0 chrX 109998861 109998985 -66975155 + MIR SINE MIR 67 200 -62 290 181 111 0 chrX 109998985 109999057 -66975083 - MER116 DNA Mariner 0 80 1 712 219 35 0 chrX 110000485 110000654 -66973486 + MER5B DNA MER1_type 1 175 -3 231 253 201 26 chrX 110000686 110000840 -66973300 - MARNA DNA Mariner -379 207 27 581 0 0 0 chrX 110001781 110001848 -66972292 + L1PA4 LINE L1 6081 6147 -8 22 35 0 0 chrX 110001848 110001877 -66972263 + AT_rich Low_complexity Low_complexity 1 29 0 218 371 14 21 chrX 110003474 110003617 -66970523 - L3b LINE CR1 -247 1336 1195 556 221 61 44 chrX 110003712 110003893 -66970247 + MIR SINE MIR 77 260 -2 1430 114 10 0 chrX 110004369 110004623 -66969517 - AluSg/x SINE Alu 0 342 87 279 280 24 40 chrX 110004727 110004852 -66969288 + L1M3e LINE L1 7 1258 -5769 14597 166 33 13 chrX 110006429 110011817 -66962323 - L1MA1 LINE L1 0 7721 2442 2869 6 0 0 chrX 110011817 110012128 -66962012 - AluYa5 SINE Alu 0 311 1 14597 166 33 13 chrX 110012128 110012550 -66961590 - L1MA1 LINE L1 -5279 2442 2030 405 0 0 0 chrX 110012550 110012595 -66961545 + (TC)n Simple_repeat Simple_repeat 2 46 0 14597 166 33 13 chrX 110012595 110013213 -66960927 - L1MA1 LINE L1 -5691 2030 1160 5350 121 21 37 chrX 110013781 110014315 -66959825 + L1PA11 LINE L1 4793 5334 -840 2206 106 48 28 chrX 110014315 110014672 -66959468 + THE1B LTR MaLR 1 364 0 11371 98 20 0 chrX 110014672 110016221 -66957919 + THE1B-int LTR MaLR 1 1580 0 2099 141 22 25 chrX 110016223 110016586 -66957554 + THE1B LTR MaLR 3 364 0 5350 121 21 37 chrX 110016586 110017366 -66956774 + L1PA11 LINE L1 5334 6091 -83 23 33 0 0 chrX 110017375 110017405 -66956735 + AT_rich Low_complexity Low_complexity 1 30 0 839 81 0 16 chrX 110017466 110017589 -66956551 + L1PA11 LINE L1 6052 6172 -2 246 62 0 0 chrX 110018260 110018292 -66955848 + (TG)n Simple_repeat Simple_repeat 1 32 0 494 202 0 9 chrX 110018292 110018406 -66955734 + GA-rich Low_complexity Low_complexity 4 116 0 1892 184 45 56 chrX 110018594 110019057 -66955083 - MLT1D LTR MaLR 0 505 48 477 170 40 0 chrX 110019219 110019319 -66954821 - L1PA16 LINE L1 -4 6162 6059 810 265 75 102 chrX 110019930 110020580 -66953560 + HAL1 LINE L1 1 633 -1874 3993 139 2 2 chrX 110020884 110021515 -66952625 - L1PA15 LINE L1 -2 6163 5533 506 259 191 91 chrX 110021552 110021730 -66952410 + HAL1 LINE L1 1660 1819 -688 1591 172 0 58 chrX 110021730 110022073 -66952067 + L1PA16 LINE L1 5844 6166 0 506 259 191 91 chrX 110022073 110022573 -66951567 + HAL1 LINE L1 1819 2406 -101 27 81 0 0 chrX 110022591 110022653 -66951487 + AT_rich Low_complexity Low_complexity 1 62 0 200 241 13 0 chrX 110024516 110024595 -66949545 + (TG)n Simple_repeat Simple_repeat 2 81 0 542 287 129 31 chrX 110025974 110026260 -66947880 + L3 LINE CR1 1263 1576 -1 656 300 25 20 chrX 110026667 110026867 -66947273 + MIR SINE MIR 18 218 -44 1142 197 4 68 chrX 110027146 110027323 -66946817 + MLT1A1 LTR MaLR 119 275 -90 441 0 0 0 chrX 110027323 110027372 -66946768 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 1142 197 4 68 chrX 110027372 110027458 -66946682 + MLT1A1 LTR MaLR 275 365 0 800 268 14 69 chrX 110027498 110027774 -66946366 + MIR SINE MIR 2 262 0 1653 209 38 49 chrX 110028620 110028989 -66945151 + MLT1A1 LTR MaLR 1 365 0 736 269 28 19 chrX 110029217 110029433 -66944707 + MIR SINE MIR 45 262 0 2149 179 6 8 chrX 110029940 110030303 -66943837 + MLT1A1 LTR MaLR 1 362 -3 2160 113 0 0 chrX 110030839 110031163 -66942977 - AluSx SINE Alu 0 324 1 1559 208 88 14 chrX 110033585 110033953 -66940187 - MSTD LTR MaLR -2 384 1 3056 40 0 8 chrX 110034170 110034524 -66939616 + L1PA5 LINE L1 5804 6154 0 30 0 0 0 chrX 110034524 110034554 -66939586 + AT_rich Low_complexity Low_complexity 1 30 0 219 306 40 89 chrX 110034603 110034727 -66939413 + L2 LINE L2 2925 3042 -230 206 320 31 78 chrX 110034974 110035102 -66939038 + L2 LINE L2 3103 3224 -48 292 143 0 20 chrX 110035294 110035343 -66938797 - MLT2C2 LTR ERVL 0 464 417 372 125 0 0 chrX 110035346 110035410 -66938730 + (TA)n Simple_repeat Simple_repeat 1 64 0 247 219 12 0 chrX 110035410 110035492 -66938648 - L1MC4 LINE L1 -1336 6706 6624 297 0 0 0 chrX 110035495 110035528 -66938612 + (TG)n Simple_repeat Simple_repeat 2 34 0 1807 201 137 12 chrX 110035532 110035954 -66938186 - MLT2B1 LTR ERVL -40 480 6 1102 196 10 5 chrX 110036011 110036210 -66937930 - MER20 DNA MER1_type 0 219 20 358 252 20 82 chrX 110037489 110037636 -66936504 + MIR SINE MIR 14 151 -111 252 0 0 0 chrX 110037692 110037720 -66936420 + (CA)n Simple_repeat Simple_repeat 1 28 0 720 285 30 69 chrX 110037806 110038199 -66935941 + L2 LINE L2 2520 2897 -417 374 333 20 20 chrX 110038892 110039039 -66935101 - MIR SINE MIR -30 232 86 897 206 31 10 chrX 110039120 110039314 -66934826 + MIR SINE MIR 3 200 -62 998 222 166 71 chrX 110040333 110040869 -66933271 - MLT1G1 LTR MaLR -8 587 1 21 36 0 0 chrX 110040875 110040903 -66933237 + AT_rich Low_complexity Low_complexity 1 28 0 368 250 37 73 chrX 110042097 110042233 -66931907 - L2 LINE L2 -1 3271 3141 593 175 23 0 chrX 110042620 110042791 -66931349 + (TA)n Simple_repeat Simple_repeat 1 175 0 31 26 0 0 chrX 110042814 110042852 -66931288 + AT_rich Low_complexity Low_complexity 1 38 0 266 89 44 0 chrX 110042864 110042909 -66931231 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 206 217 0 22 chrX 110042966 110043012 -66931128 + GA-rich Low_complexity Low_complexity 1 45 0 9085 190 22 22 chrX 110044015 110045597 -66928543 + L1PA12 LINE L1 1 865 -6716 2418 76 0 0 chrX 110045597 110045888 -66928252 - AluSx SINE Alu -17 295 5 9085 190 22 22 chrX 110045888 110046892 -66927248 + L1PA12 LINE L1 865 1867 -5714 2159 135 128 16 chrX 110046892 110047276 -66926864 - MSTA LTR MaLR 0 428 2 6979 153 16 13 chrX 110047277 110048458 -66925682 - MSTA-int LTR MaLR 0 1580 428 6043 106 103 121 chrX 110048468 110050058 -66924082 + pTR5 LTR ERV1 741 2438 0 2702 132 14 2 chrX 110050066 110050483 -66923657 - MSTA-int LTR MaLR -1154 426 5 1950 154 144 24 chrX 110050487 110050869 -66923271 - MSTA LTR MaLR 0 428 1 6728 123 44 0 chrX 110050869 110051893 -66922247 + L1PA12 LINE L1 1863 2931 -4650 1652 149 103 21 chrX 110052410 110052472 -66921668 + L1MB7 LINE L1 5364 5419 -765 2076 118 11 4 chrX 110052472 110052788 -66921352 + AluSx SINE Alu 1 318 0 1652 149 103 21 chrX 110052788 110053345 -66920795 + L1MB7 LINE L1 5419 6184 0 1376 180 4 31 chrX 110054503 110054764 -66919376 + AluJo SINE Alu 46 299 -13 29 28 0 0 chrX 110055189 110055225 -66918915 + AT_rich Low_complexity Low_complexity 1 36 0 2175 208 53 2 chrX 110055255 110055722 -66918418 + L1PA12 LINE L1 2925 3415 -4169 4420 176 42 49 chrX 110056713 110057640 -66916500 - L1MC3 LINE L1 -7 7778 6857 200 83 0 28 chrX 110057640 110057676 -66916464 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 4420 176 42 49 chrX 110057676 110057776 -66916364 - L1MC3 LINE L1 -928 6857 6758 1930 146 117 23 chrX 110058647 110058990 -66915150 - THE1C LTR MaLR 0 375 1 227 257 54 40 chrX 110059626 110059700 -66914440 - MER5A DNA MER1_type -76 113 39 223 400 0 0 chrX 110059651 110059726 -66914414 + MER5A DNA MER1_type 114 188 -1 * 597 364 22 26 chrX 110060022 110060291 -66913849 + L3 LINE CR1 1301 1568 -9 22 0 0 0 chrX 110060329 110060351 -66913789 + AT_rich Low_complexity Low_complexity 1 22 0 311 298 48 8 chrX 110061007 110061131 -66913009 + MIR3 SINE MIR 52 180 -28 400 338 66 25 chrX 110061604 110061802 -66912338 + MIR SINE MIR 13 218 -44 18829 183 30 9 chrX 110062497 110069146 -66904994 + L1PA13 LINE L1 4 6809 -5 431 321 14 0 chrX 110069279 110069419 -66904721 - MIR3 SINE MIR -3 205 64 8448 89 10 3 chrX 110069925 110071821 -66902319 - L1PA7 LINE L1 -5 6149 4234 1233 186 71 100 chrX 110071821 110072273 -66901867 + LTR7 LTR ERV1 5 443 -7 2726 134 9 22 chrX 110072292 110072746 -66901394 + HERVH LTR ERV1 12 459 -7254 13330 133 23 27 chrX 110072807 110075012 -66899128 + HERVH LTR ERV1 801 2995 -4718 5435 139 5 3 chrX 110074991 110075844 -66898296 + HERVH LTR ERV1 3140 3993 -3720 * 514 118 0 54 chrX 110075923 110076016 -66898124 + LTR7 LTR ERV1 363 450 0 5728 93 34 0 chrX 110076016 110076809 -66897331 - L1P LINE L1 -1904 4242 3423 6407 77 10 2 chrX 110076809 110077642 -66896498 + HERVL-A1 LTR ERVL 4816 5654 0 2831 113 2 17 chrX 110077642 110078057 -66896083 + MLT2A1 LTR ERVL 1 409 -35 457 69 27 112 chrX 110078057 110078340 -66895800 + (TA)n Simple_repeat Simple_repeat 1 258 0 254 119 24 115 chrX 110078343 110078634 -66895506 + (TATATG)n Simple_repeat Simple_repeat 1 264 0 354 173 56 67 chrX 110078655 110078834 -66895306 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 216 127 28 101 chrX 110078837 110079096 -66895044 + (TA)n Simple_repeat Simple_repeat 1 240 0 253 189 67 0 chrX 110079113 110079277 -66894863 + (TA)n Simple_repeat Simple_repeat 1 175 0 424 144 5 139 chrX 110079351 110079552 -66894588 + (TATATG)n Simple_repeat Simple_repeat 2 175 0 451 42 5 180 chrX 110079557 110079774 -66894366 + (TA)n Simple_repeat Simple_repeat 1 179 0 281 157 20 0 chrX 110079775 110079826 -66894314 + MLT2A1 LTR ERVL 391 442 -2 497 335 165 33 chrX 110079826 110080300 -66893840 + L2 LINE L2 2736 3267 -5 180 300 17 0 chrX 110080333 110080393 -66893747 + L3 LINE CR1 1249 1309 -268 294 324 81 75 chrX 110081878 110082051 -66892089 + MIR SINE MIR 8 181 -81 667 289 71 29 chrX 110084123 110084362 -66889778 - MIR SINE MIR -3 259 11 294 291 25 25 chrX 110085076 110085155 -66888985 + Charlie1 DNA MER1_type 1 79 -2682 * 2765 151 79 22 chrX 110085146 110085729 -66888411 + Charlie1 DNA MER1_type 2144 2759 -2 287 336 49 8 chrX 110085880 110086002 -66888138 + L2 LINE L2 3187 3313 0 4593 97 13 0 chrX 110086916 110087595 -66886545 - L1PA7 LINE L1 -807 5339 4652 6361 59 7 6 chrX 110087595 110088424 -66885716 + L1PA7 LINE L1 5321 6151 -3 498 75 0 0 chrX 110089038 110089105 -66885035 + (TG)n Simple_repeat Simple_repeat 2 68 0 305 171 0 14 chrX 110089163 110089233 -66884907 + (TA)n Simple_repeat Simple_repeat 2 70 0 406 308 129 58 chrX 110089358 110089582 -66884558 + MLT1K LTR MaLR 10 249 -339 271 183 67 0 chrX 110089860 110089920 -66884220 - MLT1K LTR MaLR -2 586 523 244 283 17 0 chrX 110090035 110090095 -66884045 + CT-rich Low_complexity Low_complexity 2 62 0 769 313 73 25 chrX 110090721 110091120 -66883020 + L2 LINE L2 2384 2801 -513 386 266 77 68 chrX 110092373 110092580 -66881560 - MIR SINE MIR -48 214 6 358 279 52 44 chrX 110093096 110093232 -66880908 - MIR SINE MIR 0 262 126 1277 191 0 0 chrX 110093868 110094083 -66880057 + L1PA13 LINE L1 175 389 -6398 * 6415 232 15 8 chrX 110094081 110096548 -66877592 + L1PA13 LINE L1 1326 3823 -2974 2109 133 118 2 chrX 110096549 110097116 -66877024 + L1PA15 LINE L1 5056 5687 -478 31317 110 11 52 chrX 110097126 110103546 -66870594 + L1PA7 LINE L1 12 6151 -3 2447 157 27 2 chrX 110103567 110103981 -66870159 + L1PA15 LINE L1 5677 6100 -65 322 298 10 19 chrX 110104082 110104186 -66869954 - MER81 DNA DNA 0 114 12 242 280 13 27 chrX 110104738 110104813 -66869327 + Charlie8 DNA MER1_type 45 118 -2299 853 277 27 23 chrX 110105263 110105519 -66868621 + MIR SINE MIR 6 262 0 33 0 0 0 chrX 110105522 110105555 -66868585 + AT_rich Low_complexity Low_complexity 1 33 0 425 302 75 19 chrX 110105897 110106056 -66868084 - MIR SINE MIR -84 178 11 276 204 0 0 chrX 110106170 110106224 -66867916 + L1 LINE L1 4920 4973 -1173 751 95 5 196 chrX 110106234 110106423 -66867717 + L1PA13 LINE L1 6000 6152 -11 210 37 0 0 chrX 110106423 110106450 -66867690 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 269 342 34 43 chrX 110106450 110106684 -66867456 - L2 LINE L2 -1487 1827 1596 225 250 0 0 chrX 110107284 110107336 -66866804 + (TG)n Simple_repeat Simple_repeat 2 53 0 303 122 0 0 chrX 110108077 110108126 -66866014 + (TC)n Simple_repeat Simple_repeat 2 50 0 243 61 0 0 chrX 110108150 110108183 -66865957 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 459 362 109 46 chrX 110109587 110109982 -66864158 - L2 LINE L2 0 3272 2853 1553 223 5 56 chrX 110109992 110110386 -66863754 - MLT1B LTR MaLR -11 379 6 537 272 59 45 chrX 110110459 110110512 -66863628 - L2 LINE L2 -604 2710 2659 1964 221 36 36 chrX 110110512 110111015 -66863125 - MLT1D LTR MaLR -2 503 1 537 272 59 45 chrX 110111015 110111163 -66862977 - L2 LINE L2 -655 2659 2506 423 0 0 0 chrX 110111163 110111210 -66862930 + (TA)n Simple_repeat Simple_repeat 1 47 0 1242 218 13 50 chrX 110111972 110112270 -66861870 + L1M3e LINE L1 1 287 -6743 2624 228 51 31 chrX 110112281 110113779 -66860361 + L1M3e LINE L1 1188 2722 -4385 6030 206 93 6 chrX 110113788 110113856 -66860284 + L1 LINE L1 19 80 -7485 189 0 0 0 chrX 110113856 110113877 -66860263 + (CA)n Simple_repeat Simple_repeat 1 21 0 6030 206 93 6 chrX 110113877 110115108 -66859032 + L1 LINE L1 80 1431 -6134 2072 161 24 10 chrX 110115315 110115726 -66858414 - L1MA2 LINE L1 -6 6298 5882 2139 173 7 11 chrX 110115726 110116160 -66857980 + L1 LINE L1 5848 6279 -1286 216 0 0 0 chrX 110116160 110116184 -66857956 + (TTA)n Simple_repeat Simple_repeat 1 24 0 29670 99 6 8 chrX 110116184 110121489 -66852651 - L1PA5 LINE L1 -13 6456 1162 659 111 0 0 chrX 110121487 110121577 -66852563 - L1PA5 LINE L1 -6365 96 7 * 7077 174 57 0 chrX 110121571 110122969 -66851171 - L1 LINE L1 -1256 4890 3414 547 130 43 0 chrX 110122974 110123066 -66851074 - Tigger3(Golem) DNA MER2_type -49 2980 2885 1050 211 30 0 chrX 110123070 110123307 -66850833 + L1ME1 LINE L1 5805 6048 -118 2227 146 22 0 chrX 110123991 110124347 -66849793 + THE1B LTR MaLR 1 364 0 559 246 15 8 chrX 110124710 110124840 -66849300 - MER58B DNA MER1_type 0 341 211 319 238 37 0 chrX 110125050 110125161 -66848979 - L1MB7 LINE L1 -2 6176 6060 190 148 37 0 chrX 110125242 110125296 -66848844 + (GTTTG)n Simple_repeat Simple_repeat 4 59 0 1248 176 40 44 chrX 110125955 110126108 -66848032 + L1MB8 LINE L1 5819 5972 -206 2077 130 0 3 chrX 110126108 110126409 -66847731 + AluSx SINE Alu 1 300 -12 1248 176 40 44 chrX 110126409 110126527 -66847613 + L1MB8 LINE L1 5972 6089 -89 1985 141 0 30 chrX 110126574 110126873 -66847267 - AluSx SINE Alu -22 290 1 532 138 9 37 chrX 110126873 110126982 -66847158 + L1MB7 LINE L1 6077 6182 -2 514 275 138 43 chrX 110127689 110127990 -66846150 - L1MB7 LINE L1 -376 5745 5486 365 284 0 0 chrX 110127990 110128071 -66846069 + Tigger3(Golem) DNA MER2_type 2 82 -2947 * 4596 147 19 5 chrX 110128069 110128861 -66845279 + Tigger3(Golem) DNA MER2_type 2225 3027 -2 24 32 0 0 chrX 110128937 110128968 -66845172 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chrX 110129023 110129044 -66845096 + AT_rich Low_complexity Low_complexity 1 21 0 6229 135 8 37 chrX 110129044 110130344 -66843796 - L1MA1 LINE L1 0 7721 6461 * 8381 167 12 3 chrX 110130343 110130702 -66843438 - L1PB1 LINE L1 0 6867 6513 690 47 0 0 chrX 110130702 110130788 -66843352 + (TA)n Simple_repeat Simple_repeat 2 87 0 8381 167 12 3 chrX 110130788 110132161 -66841979 - L1PB1 LINE L1 -354 6513 5107 288 0 0 0 chrX 110132161 110132193 -66841947 + (TTG)n Simple_repeat Simple_repeat 2 33 0 8381 167 12 3 chrX 110132193 110132929 -66841211 - L1PB1 LINE L1 -1760 5107 4379 10764 187 102 11 chrX 110132937 110136193 -66837947 - L1PB1 LINE L1 -3135 3727 178 1140 196 0 9 chrX 110136185 110136409 -66837731 - L1MA1 LINE L1 -1081 6484 6263 * 2225 199 64 2 chrX 110136404 110136948 -66837192 - L1MA1 LINE L1 -2511 5054 4477 * 7824 221 36 13 chrX 110136947 110138566 -66835574 + L1M1 LINE L1 17 1673 -5892 7490 203 175 4 chrX 110138561 110140281 -66833859 - L1MA1 LINE L1 -5536 2029 16 * 498 326 42 25 chrX 110140624 110140863 -66833277 + MIR SINE MIR 7 249 -13 181 313 0 47 chrX 110141930 110141994 -66832146 - MIR3 SINE MIR -143 65 5 4394 197 52 6 chrX 110142793 110142905 -66831235 - L1MA9 LINE L1 -39 6273 6168 423 0 0 0 chrX 110142905 110142952 -66831188 + (TG)n Simple_repeat Simple_repeat 2 48 0 4394 197 52 6 chrX 110142952 110143939 -66830201 - L1MA9 LINE L1 -144 6168 5123 212 323 0 15 chrX 110143949 110144014 -66830126 - MIR SINE MIR -179 83 20 597 345 73 60 chrX 110144175 110144960 -66829180 + L2 LINE L2 2474 3272 0 1738 193 48 92 chrX 110144974 110145493 -66828647 + MLT1D LTR MaLR 1 496 -9 530 309 6 12 chrX 110145561 110145726 -66828414 - MER5A DNA MER1_type 0 189 26 1639 142 139 13 chrX 110147024 110147333 -66826807 - MER7A DNA MER2_type 0 346 1 222 37 0 0 chrX 110148497 110148524 -66825616 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1186 110 10 35 chrX 110148544 110148744 -66825396 - AluSg/x SINE Alu 0 312 118 3624 67 28 0 chrX 110148744 110149480 -66824660 - L1P3 LINE L1 -551 5603 4845 2746 53 0 0 chrX 110149480 110149818 -66824322 + L1PA7 LINE L1 5815 6152 -2 2800 88 10 0 chrX 110149818 110150193 -66823947 + L1PA13 LINE L1 5767 6155 -8 5120 207 13 47 chrX 110150208 110151524 -66822616 + L1P LINE L1 1432 2702 -3444 3400 114 14 14 chrX 110151517 110151893 -66822247 + L1P4 LINE L1 5102 5483 -678 * 2247 124 0 0 chrX 110151893 110152200 -66821940 + AluSx SINE Alu 1 307 -5 3400 114 14 14 chrX 110152200 110152483 -66821657 + L1P4 LINE L1 5483 5765 -396 * 7927 186 24 62 chrX 110152479 110154124 -66820016 + L1MA6 LINE L1 2671 4377 -1923 302 81 0 0 chrX 110154124 110154161 -66819979 + tRNA-Tyr-TAC tRNA tRNA 1 37 -39 6523 79 19 8 chrX 110154161 110155234 -66818906 + L1PA10 LINE L1 5084 6165 -3 7927 186 24 62 chrX 110155234 110157203 -66816937 + L1MA6 LINE L1 4375 6051 -249 2194 153 58 11 chrX 110157206 110157792 -66816348 + L1MCa LINE L1 1222 1923 -4503 581 244 25 0 chrX 110157804 110157923 -66816217 + FLAM_A SINE Alu 6 127 -15 11364 41 4 0 chrX 110157923 110159370 -66814770 + L1PA5 LINE L1 3989 5441 -713 5709 47 1 0 chrX 110159582 110160281 -66813859 + L1PA5 LINE L1 5449 6148 -6 2710 157 56 0 chrX 110160295 110160846 -66813294 + L1MCa LINE L1 1919 2499 -3927 655 292 43 35 chrX 110161054 110161311 -66812829 + MIR SINE MIR 2 260 -2 201 175 0 0 chrX 110162033 110162073 -66812067 + (CAT)n Simple_repeat Simple_repeat 1 40 0 217 275 17 50 chrX 110162122 110162242 -66811898 - L2 LINE L2 -70 3243 3128 405 286 37 82 chrX 110162442 110162711 -66811429 + MER102a DNA MER1_type 71 327 -3 631 257 42 139 chrX 110163155 110163937 -66810203 + L1MC4 LINE L1 7194 7899 -143 402 57 0 0 chrX 110163937 110163990 -66810150 + (CA)n Simple_repeat Simple_repeat 2 54 0 251 341 167 31 chrX 110164239 110164497 -66809643 + L2 LINE L2 2959 3251 -21 546 224 194 51 chrX 110165720 110165916 -66808224 + L2 LINE L2 3090 3313 0 307 255 48 55 chrX 110165920 110166065 -66808075 - MIR SINE MIR -1 261 118 814 252 56 5 chrX 110166199 110166413 -66807727 - MIR SINE MIR 0 262 38 21 36 0 0 chrX 110166489 110166517 -66807623 + AT_rich Low_complexity Low_complexity 1 28 0 260 186 274 29 chrX 110166560 110166662 -66807478 - MIR SINE MIR -57 205 79 406 295 0 0 chrX 110167005 110167110 -66807030 + MIR SINE MIR 73 177 -85 217 357 0 0 chrX 110167316 110167386 -66806754 - L2 LINE L2 -196 3076 3007 1574 207 120 13 chrX 110167394 110167770 -66806370 - MLT1D LTR MaLR -2 503 88 857 267 49 90 chrX 110167803 110168313 -66805827 - LTR33A LTR ERVL -28 495 7 273 57 0 0 chrX 110168984 110169019 -66805121 + (CA)n Simple_repeat Simple_repeat 2 36 0 303 28 0 0 chrX 110171045 110171081 -66803059 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 283 36 116 chrX 110171352 110171490 -66802650 - L2 LINE L2 -9 3263 3137 253 339 33 33 chrX 110172867 110173050 -66801090 + L2 LINE L2 2748 2930 -384 214 250 0 23 chrX 110173295 110173339 -66800801 + L2 LINE L2 3137 3179 -93 291 309 84 17 chrX 110173539 110173717 -66800423 + L2 LINE L2 2863 3052 -220 1448 208 23 51 chrX 110174015 110174366 -66799774 - MLT1A2 LTR MaLR -33 341 1 638 323 21 5 chrX 110174432 110174621 -66799519 + MIR SINE MIR 59 250 -12 209 296 28 84 chrX 110174639 110174781 -66799359 + L2 LINE L2 2937 3070 -202 519 214 10 0 chrX 110175136 110175234 -66798906 + MIR SINE MIR 48 146 -116 32 0 0 0 chrX 110175234 110175266 -66798874 + AT_rich Low_complexity Low_complexity 1 32 0 1022 163 105 116 chrX 110175330 110175760 -66798380 + MSTC LTR MaLR 4 428 0 320 274 169 60 chrX 110176480 110176812 -66797328 + L2 LINE L2 2945 3312 -1 254 360 0 0 chrX 110177027 110177138 -66797002 - MIR3 SINE MIR -1 207 97 201 294 25 67 chrX 110177317 110177436 -66796704 - L3 LINE CR1 -4 1573 1460 638 304 27 27 chrX 110177902 110178086 -66796054 + MIR3 SINE MIR 10 193 -15 310 346 109 73 chrX 110179326 110179754 -66794386 + L2 LINE L2 2804 3250 -22 1519 171 119 0 chrX 110179754 110180064 -66794076 + MER7A DNA MER2_type 2 346 0 310 346 109 73 chrX 110180064 110180086 -66794054 + L2 LINE L2 3250 3270 -2 200 317 30 111 chrX 110181946 110182208 -66791932 + L2 LINE L2 2971 3211 -61 382 350 66 27 chrX 110182246 110182429 -66791711 + L2 LINE L2 3078 3267 -5 607 186 48 91 chrX 110182636 110182846 -66791294 - L2 LINE L2 -9 3304 3104 753 284 56 35 chrX 110184133 110184683 -66789457 - L1ME4a LINE L1 -18 6103 5542 429 355 26 13 chrX 110184849 110185001 -66789139 - L2 LINE L2 -10 3262 3109 272 279 139 16 chrX 110185504 110185626 -66788514 - MIR SINE MIR -23 239 103 1423 35 0 0 chrX 110186997 110187167 -66786973 + L1PA4 LINE L1 5981 6150 -5 425 0 0 0 chrX 110187679 110187729 -66786411 - L1P LINE L1 -744 5410 5361 6095 41 3 0 chrX 110187729 110188500 -66785640 + L1PA4 LINE L1 5417 6194 0 1666 41 14 5 chrX 110188500 110188718 -66785422 + L1PA5 LINE L1 5770 5989 -165 5762 252 61 34 chrX 110188979 110190518 -66783622 - L1MEc LINE L1 -3911 2485 856 2424 113 8 21 chrX 110190518 110190898 -66783242 + THE1C LTR MaLR 1 375 0 5762 252 61 34 chrX 110190898 110191745 -66782395 - L1MEc LINE L1 -5540 856 34 279 327 50 20 chrX 110192202 110192303 -66781837 - MIR3 SINE MIR -92 116 13 1676 216 13 0 chrX 110193191 110193664 -66780476 + AluJb SINE Alu 1 477 0 252 143 0 0 chrX 110194314 110194370 -66779770 + (T)n Simple_repeat Simple_repeat 1 56 0 1838 194 75 45 chrX 110194452 110194942 -66779198 - MLT1D LTR MaLR 0 505 1 228 86 0 0 chrX 110195702 110195737 -66778403 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 271 344 132 9 chrX 110195739 110195966 -66778174 + L2 LINE L2 2613 2867 -447 212 252 9 90 chrX 110196684 110196795 -66777345 - L2 LINE L2 0 3272 3171 310 276 57 19 chrX 110197546 110197651 -66776489 + L2 LINE L2 2726 2834 -480 389 317 0 0 chrX 110198374 110198478 -66775662 - L2 LINE L2 0 3313 3210 298 326 38 108 chrX 110200466 110200754 -66773386 + L2 LINE L2 3004 3271 -1 195 365 0 0 chrX 110200882 110200956 -66773184 - L2 LINE L2 -58 3214 3141 407 314 0 0 chrX 110201568 110201673 -66772467 + L2 LINE L2 3150 3254 -18 2301 43 0 0 chrX 110202027 110202308 -66771832 - L1PA4 LINE L1 -3 6152 5872 22 0 0 0 chrX 110202378 110202400 -66771740 + AT_rich Low_complexity Low_complexity 1 22 0 203 210 175 98 chrX 110202761 110202904 -66771236 - L2 LINE L2 0 3313 3160 291 292 34 17 chrX 110202958 110203136 -66771004 + L1MC/D LINE L1 5644 5824 -1984 2219 94 3 27 chrX 110203141 110203440 -66770700 - AluY SINE Alu -19 292 1 21 0 0 0 chrX 110203556 110203577 -66770563 + AT_rich Low_complexity Low_complexity 1 21 0 854 327 153 46 chrX 110203738 110204717 -66769423 - L2 LINE L2 -337 2977 1831 1846 228 28 35 chrX 110204717 110205225 -66768915 + MLT1D LTR MaLR 2 505 0 854 327 153 46 chrX 110205225 110205509 -66768631 - L2 LINE L2 -1483 1831 1579 277 170 0 57 chrX 110205715 110205768 -66768372 - MIR SINE MIR -77 131 82 258 238 83 48 chrX 110205797 110205881 -66768259 + MIR SINE MIR 176 262 0 283 234 9 101 chrX 110205913 110206024 -66768116 + MIR SINE MIR 5 105 -103 227 188 24 82 chrX 110207639 110207724 -66766416 - MIR SINE MIR -68 194 115 4984 62 3 6 chrX 110208283 110208923 -66765217 + L1PA7 LINE L1 5512 6149 -5 1732 37 0 9 chrX 110209218 110209435 -66764705 - L1PA4 LINE L1 -1 6154 5940 355 305 26 26 chrX 110209510 110209661 -66764479 + MIR SINE MIR 53 203 -59 40853 44 8 1 chrX 110209663 110215770 -66758370 + L1PA4 LINE L1 1 6153 -2 389 282 110 72 chrX 110217063 110217382 -66756758 + MLT1I LTR MaLR 3 333 -76 209 227 0 0 chrX 110217447 110217491 -66756649 + (TTA)n Simple_repeat Simple_repeat 2 45 0 6778 70 0 0 chrX 110218007 110218971 -66755169 - L1PA7 LINE L1 -1 6153 5188 4426 62 40 4 chrX 110218971 110220053 -66754087 - MER11A LTR ERVK 0 1266 1 13311 88 2 5 chrX 110220053 110222034 -66752106 - L1PA7 LINE L1 -953 5193 3217 1921 114 8 0 chrX 110222035 110222297 -66751843 - AluSc SINE Alu -45 264 1 187 311 0 66 chrX 110223557 110223618 -66750522 + L2 LINE L2 3172 3228 -85 210 37 0 0 chrX 110224356 110224383 -66749757 + (TG)n Simple_repeat Simple_repeat 2 28 0 376 177 0 0 chrX 110224974 110225036 -66749104 + AluJ/FLAM SINE Alu 1 62 -240 904 191 32 0 chrX 110275044 110275233 -66698907 - L1 LINE L1 -1052 5094 4900 * 4134 149 25 3 chrX 110275229 110275974 -66698166 + L1 LINE L1 4138 4899 -1247 2415 72 0 3 chrX 110276359 110276663 -66697477 - AluY SINE Alu -8 303 1 243 292 0 14 chrX 110276673 110276745 -66697395 + Charlie8 DNA MER1_type 2341 2411 -6 3199 16 0 0 chrX 110276976 110277342 -66696798 + L1PA2 LINE L1 5788 6153 -2 246 125 0 0 chrX 110277346 110277394 -66696746 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 186 307 67 13 chrX 110277398 110277473 -66696667 + L2 LINE L2 3184 3262 -10 354 349 27 14 chrX 110279216 110279362 -66694778 - MIR3 SINE MIR -58 150 3 215 231 13 77 chrX 110280776 110280854 -66693286 + MIR SINE MIR 125 197 -65 298 327 81 58 chrX 110280899 110281309 -66692831 + L2 LINE L2 2475 2893 -421 273 258 34 45 chrX 110281461 110281550 -66692590 + L3 LINE CR1 1479 1566 -11 223 303 211 9 chrX 110281926 110282035 -66692105 + L2 LINE L2 3141 3271 -1 216 259 19 0 chrX 110282624 110282678 -66691462 + CT-rich Low_complexity Low_complexity 2 56 0 360 59 0 0 chrX 110283259 110283310 -66690830 + (CA)n Simple_repeat Simple_repeat 2 52 0 522 252 0 26 chrX 110283952 110284067 -66690073 - L2 LINE L2 -11 3302 3191 205 291 35 58 chrX 110284504 110284590 -66689550 + L2 LINE L2 3180 3263 -9 198 143 0 0 chrX 110284598 110284633 -66689507 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 255 192 37 22 chrX 110284887 110284946 -66689194 - MER5A DNA MER1_type 0 189 121 1161 163 5 0 chrX 110284948 110285163 -66688977 + L1PB3 LINE L1 2446 2661 -4202 41727 43 3 1 chrX 110285163 110291309 -66682831 + L1PA3 LINE L1 2 6155 0 13289 182 35 8 chrX 110291325 110291581 -66682559 + L1PB3 LINE L1 2647 2895 -3975 1870 152 0 0 chrX 110291581 110291857 -66682283 + AluSx SINE Alu 1 276 -36 13289 182 35 8 chrX 110291857 110295715 -66678425 + L1PB3 LINE L1 2895 6869 -1 543 266 24 0 chrX 110295719 110295843 -66678297 - MER5A DNA MER1_type -51 138 12 6460 36 7 0 chrX 110295857 110296781 -66677359 - L1PA4 LINE L1 -663 5492 4564 5267 39 11 0 chrX 110296781 110297414 -66676726 + L1PA4 LINE L1 5506 6148 -7 259 56 37 37 chrX 110297417 110297431 -66676709 + (TAAAAA)n Simple_repeat Simple_repeat 6 19 -40 2758 23 0 0 chrX 110297431 110297739 -66676401 + AluYa5 SINE Alu 1 308 -3 259 56 37 37 chrX 110297739 110297778 -66676362 + (TAAAAA)n Simple_repeat Simple_repeat 18 59 0 13617 162 41 24 chrX 110297791 110298876 -66675264 - L1MA5 LINE L1 -11 6289 5224 2389 91 7 0 chrX 110298876 110299185 -66674955 - AluSp SINE Alu -2 311 1 13617 162 41 24 chrX 110299185 110300701 -66673439 - L1MA5 LINE L1 -1076 5224 3735 198 71 0 0 chrX 110300701 110300729 -66673411 + (TG)n Simple_repeat Simple_repeat 2 29 0 13617 162 41 24 chrX 110300729 110302172 -66671968 - L1MA5 LINE L1 -2565 3735 2177 644 118 36 0 chrX 110302183 110302293 -66671847 - L1MA3 LINE L1 -2 7722 7609 1031 211 77 3 chrX 110302294 110302593 -66671547 + L1 LINE L1 2468 2788 -3358 * 12695 179 18 20 chrX 110302583 110303157 -66670983 - L1MA3 LINE L1 -116 7608 7035 2073 129 0 0 chrX 110303157 110303451 -66670689 - AluSx SINE Alu -18 294 1 12695 179 18 20 chrX 110303451 110303739 -66670401 - L1MA3 LINE L1 -689 7035 6748 1827 109 53 32 chrX 110303739 110304023 -66670117 - AluSc SINE Alu -19 290 1 12695 179 18 20 chrX 110304023 110307048 -66667092 - L1MA3 LINE L1 -976 6748 3711 5072 167 15 4 chrX 110307054 110308763 -66665377 - L1PB1 LINE L1 -227 6640 4917 7461 112 66 1 chrX 110308763 110310268 -66663872 - L1PB1 LINE L1 -4230 2633 885 * 13828 162 19 2 chrX 110310262 110312695 -66661445 - L1MA3 LINE L1 -5090 2475 2 526 260 60 0 chrX 110312698 110312898 -66661242 - L1M2 LINE L1 -3959 2890 2679 474 280 0 8 chrX 110312908 110313040 -66661100 - L1M2 LINE L1 -6712 137 7 426 307 203 0 chrX 110313096 110313308 -66660832 + MIR SINE MIR 8 262 0 255 217 0 43 chrX 110313794 110313863 -66660277 + CT-rich Low_complexity Low_complexity 3 68 0 352 353 37 7 chrX 110313893 110314029 -66660111 + MER5A DNA MER1_type 2 141 -48 2298 114 0 0 chrX 110314039 110314345 -66659795 + AluSg SINE Alu 1 306 -4 193 260 0 20 chrX 110315597 110315647 -66658493 - MIR SINE MIR -174 88 40 194 374 122 0 chrX 110316573 110316688 -66657452 - MIR SINE MIR -114 148 20 244 86 0 0 chrX 110316694 110316729 -66657411 - MLT1B LTR MaLR 0 374 340 13249 136 25 8 chrX 110316737 110318986 -66655154 + Tigger1 DNA MER2_type 26 2312 -106 6842 49 0 17 chrX 110318993 110319962 -66654178 - L1PA7 LINE L1 -4 6150 5171 2987 90 2 15 chrX 110319963 110320430 -66653710 + L1PA7 LINE L1 4713 5173 -973 761 136 0 0 chrX 110320431 110320549 -66653591 + Tigger1 DNA MER2_type 2301 2418 0 * 1575 172 27 49 chrX 110320549 110320861 -66653279 - MLT1B LTR MaLR -32 358 54 873 226 84 75 chrX 110320861 110321219 -66652921 - MLT1A1 LTR MaLR -4 361 1 1575 172 27 49 chrX 110321219 110321272 -66652868 - MLT1B LTR MaLR -336 54 1 2484 60 3 0 chrX 110321392 110321690 -66652450 - AluY SINE Alu -12 299 1 222 171 0 0 chrX 110323393 110323428 -66650712 - L3 LINE CR1 -17 1560 1526 475 259 105 20 chrX 110323451 110323670 -66650470 + MIR SINE MIR 2 235 -27 399 241 57 18 chrX 110323678 110323828 -66650312 - MIR SINE MIR -69 139 2 522 312 14 0 chrX 110324163 110324301 -66649839 - MIR3 SINE MIR -58 150 11 180 0 0 0 chrX 110325893 110325913 -66648227 + (CA)n Simple_repeat Simple_repeat 1 20 0 201 278 42 42 chrX 110326032 110326104 -66648036 - L2 LINE L2 -6 3307 3236 206 366 45 9 chrX 110326203 110326315 -66647825 - L2 LINE L2 -254 3018 2903 2412 70 0 0 chrX 110326448 110326747 -66647393 - AluY SINE Alu -12 299 1 469 276 39 106 chrX 110328350 110328709 -66645431 - MLT1I LTR MaLR 0 409 75 270 0 0 0 chrX 110328903 110328933 -66645207 + (CA)n Simple_repeat Simple_repeat 2 31 0 366 258 10 21 chrX 110329729 110329826 -66644314 + MIR SINE MIR 21 116 -92 528 274 26 0 chrX 110329864 110329981 -66644159 - L2 LINE L2 0 3272 3153 35 41 0 0 chrX 110330408 110330457 -66643683 + AT_rich Low_complexity Low_complexity 1 49 0 436 351 0 53 chrX 110331576 110331747 -66642393 - L2 LINE L2 0 3272 3111 27 0 0 0 chrX 110331750 110331777 -66642363 + AT_rich Low_complexity Low_complexity 1 27 0 1685 178 75 3 chrX 110332017 110332337 -66641803 - MER2 DNA MER2_type 0 344 2 614 223 0 0 chrX 110333537 110333658 -66640482 + FLAM_C SINE Alu 2 122 -11 1428 202 8 8 chrX 110333666 110333933 -66640207 + AluJo SINE Alu 1 267 -45 880 252 74 51 chrX 110334171 110335010 -66639130 - L1ME3A LINE L1 -219 5951 5092 406 285 35 39 chrX 110336566 110336850 -66637290 - L1ME3A LINE L1 -3754 2392 2110 12673 39 1 1 chrX 110337684 110339321 -66634819 - L1PA3 LINE L1 -1883 4263 2626 9516 23 0 1 chrX 110339321 110341210 -66632930 + L1PA3 LINE L1 4261 6147 -8 579 283 106 28 chrX 110342890 110343037 -66631103 - LTR33 LTR ERVL -111 410 276 2384 116 34 6 chrX 110343037 110343391 -66630749 + THE1B LTR MaLR 1 364 0 579 283 106 28 chrX 110343391 110343577 -66630563 - LTR33 LTR ERVL -245 276 10 549 130 20 0 chrX 110344002 110344102 -66630038 - L1MB8 LINE L1 -8 6170 6069 2685 171 22 0 chrX 110344123 110344621 -66629519 - L1MB8 LINE L1 -194 5990 5482 1306 221 0 0 chrX 110344626 110344951 -66629189 - L1MB8 LINE L1 -908 5238 4914 7091 103 176 43 chrX 110348373 110349870 -66624270 - pTR5 LTR ERV1 0 2438 743 302 396 82 22 chrX 110351475 110351839 -66622301 + L2 LINE L2 2509 2894 -420 1032 279 12 0 chrX 110352079 110352323 -66621817 + MIR SINE MIR 2 248 -14 2066 128 4 0 chrX 110352332 110352633 -66621507 + AluSx SINE Alu 1 302 0 181 373 0 0 chrX 110352651 110352718 -66621422 + L2 LINE L2 3201 3267 -5 878 157 16 43 chrX 110352728 110352913 -66621227 - L1MB5 LINE L1 0 6174 5995 378 0 0 0 chrX 110353604 110353646 -66620494 + (TG)n Simple_repeat Simple_repeat 2 43 0 414 255 0 92 chrX 110354663 110354804 -66619336 + MIR SINE MIR 42 169 -93 692 309 36 0 chrX 110354884 110355133 -66619007 + MIR SINE MIR 5 262 0 42390 37 2 2 chrX 110355424 110361619 -66612521 + L1PA3 LINE L1 1 6195 0 1939 145 25 38 chrX 110361774 110362166 -66611974 - L1MB7 LINE L1 -11 6173 5787 452 225 174 0 chrX 110362752 110362890 -66611250 + MIR SINE MIR 88 249 -13 306 282 205 26 chrX 110362947 110363103 -66611037 + MIR SINE MIR 9 192 -70 1409 286 78 9 chrX 110363224 110363754 -66610386 + L2 LINE L2 2748 3313 0 311 281 151 22 chrX 110364639 110364778 -66609362 - MER5A DNA MER1_type -32 157 1 469 258 5 108 chrX 110365297 110365491 -66608649 - MER5A DNA MER1_type -15 174 1 261 0 0 0 chrX 110367480 110367509 -66606631 + (TG)n Simple_repeat Simple_repeat 2 30 0 545 269 84 35 chrX 110367625 110367852 -66606288 + MIR SINE MIR 8 245 -17 613 306 70 0 chrX 110368010 110368239 -66605901 + MIR SINE MIR 15 259 -3 288 0 0 0 chrX 110368421 110368453 -66605687 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 228 271 0 116 chrX 110368455 110368496 -66605644 - L2 LINE L2 -9 3304 3260 477 81 0 115 chrX 110368496 110368583 -66605557 - MADE1 DNA Mariner 0 80 4 228 271 0 116 chrX 110368583 110368670 -66605470 - L2 LINE L2 -53 3260 3191 301 337 11 11 chrX 110369416 110369508 -66604632 + L1ME LINE L1 5619 5710 -411 252 0 0 0 chrX 110369656 110369684 -66604456 + (TA)n Simple_repeat Simple_repeat 2 29 0 2618 48 0 3 chrX 110369684 110369994 -66604146 - AluY SINE Alu -2 309 1 714 181 118 0 chrX 110370152 110370279 -66603861 - MER5A DNA MER1_type -1 188 47 243 265 242 30 chrX 110370167 110370299 -66603841 + MER5A DNA MER1_type 29 188 -1 * 8970 174 31 15 chrX 110370360 110373750 -66600390 - L1MEd LINE L1 -1869 5696 2246 * 9611 182 14 4 chrX 110373746 110376614 -66597526 - L1PA15-16 LINE L1 -4399 2450 5 4117 186 43 22 chrX 110376630 110377865 -66596275 - L1MB8 LINE L1 -12 6166 4914 423 236 50 22 chrX 110377866 110378048 -66596092 - L1MB8 LINE L1 -1323 4823 4637 501 274 86 10 chrX 110378063 110378366 -66595774 - L1MB8 LINE L1 -1870 4276 3951 868 320 48 22 chrX 110378388 110378788 -66595352 - L1MEd LINE L1 -5705 1850 1441 315 269 0 0 chrX 110378830 110378897 -66595243 + L2 LINE L2 3246 3312 -1 319 364 78 56 chrX 110378938 110379460 -66594680 - L2 LINE L2 -831 2483 1950 1857 241 58 58 chrX 110383513 110384130 -66590010 - MLT1E2 LTR MaLR -7 619 1 21715 45 48 3 chrX 110385009 110387784 -66586356 + L1PA2 LINE L1 5 2903 -3243 19026 28 0 0 chrX 110387784 110390822 -66583318 + L1PA2 LINE L1 3112 6152 -3 347 310 66 20 chrX 110391048 110391202 -66582938 - MIR3 SINE MIR -46 162 2 2452 71 0 3 chrX 110391596 110391892 -66582248 + AluY SINE Alu 1 295 -16 296 280 76 61 chrX 110392895 110393027 -66581113 + MIR SINE MIR 29 162 -100 * 655 286 167 0 chrX 110393016 110393226 -66580914 - MIR SINE MIR -1 261 17 249 343 36 50 chrX 110393466 110393606 -66580534 + MIR SINE MIR 16 153 -55 260 276 10 61 chrX 110394378 110394476 -66579664 - MIR3 SINE MIR 0 208 116 1033 312 39 29 chrX 110394495 110394905 -66579235 - LTR16A LTR ERVL -21 429 16 887 325 107 16 chrX 110394942 110395556 -66578584 + L2 LINE L2 2591 3265 -7 705 266 73 32 chrX 110396727 110396945 -66577195 - MIR SINE MIR -12 250 24 433 274 145 32 chrX 110397460 110397930 -66576210 - L1MC5 LINE L1 -176 7785 7263 1748 130 110 26 chrX 110398436 110398782 -66575358 - THE1C LTR MaLR 0 375 1 272 348 87 7 chrX 110399911 110400049 -66574091 - L2 LINE L2 -4 3309 3161 1351 184 174 48 chrX 110400599 110400969 -66573171 - MLT1D LTR MaLR -8 497 68 3274 98 2 6 chrX 110400969 110401436 -66572704 - MER4C LTR ERV1 0 465 1 1351 184 174 48 chrX 110401436 110401479 -66572661 - MLT1D LTR MaLR -437 68 32 2187 124 0 0 chrX 110401912 110402210 -66571930 - AluSx SINE Alu -14 298 1 228 341 65 51 chrX 110402612 110402829 -66571311 - L2 LINE L2 -524 2790 2571 328 215 65 32 chrX 110403039 110403132 -66571008 - Charlie8 DNA MER1_type -2144 273 178 2156 129 0 0 chrX 110403721 110404024 -66570116 + AluSx SINE Alu 1 303 -9 378 0 0 0 chrX 110404472 110404514 -66569626 + (CA)n Simple_repeat Simple_repeat 2 43 0 238 143 36 232 chrX 110404744 110404856 -66569284 - MIR3 SINE MIR -21 187 98 2545 44 3 0 chrX 110405566 110405862 -66568278 - AluY SINE Alu -14 297 1 325 65 0 0 chrX 110407112 110407158 -66566982 + MADE1 DNA Mariner 35 80 0 24 0 0 0 chrX 110407311 110407335 -66566805 + AT_rich Low_complexity Low_complexity 1 24 0 192 40 0 0 chrX 110407512 110407537 -66566603 + (GA)n Simple_repeat Simple_repeat 2 26 0 181 158 26 0 chrX 110407626 110407664 -66566476 - MIR SINE MIR -26 236 198 543 294 185 0 chrX 110407680 110407891 -66566249 + MIR SINE MIR 13 262 0 418 268 101 30 chrX 110408658 110408826 -66565314 + L2 LINE L2 3132 3311 -2 848 291 35 8 chrX 110408851 110409105 -66565035 + MIR SINE MIR 1 261 -1 457 335 5 36 chrX 110409769 110409963 -66564177 - MIR3 SINE MIR -3 205 18 274 345 35 0 chrX 110410383 110410470 -66563670 - L2 LINE L2 0 3313 3224 2374 79 0 0 chrX 110410719 110411010 -66563130 + AluY SINE Alu 1 291 -20 247 252 78 0 chrX 110411683 110411798 -66562342 - L1ME4a LINE L1 -51 6070 5947 1145 299 107 19 chrX 110411798 110412531 -66561609 + L2 LINE L2 2509 3308 -5 236 286 155 38 chrX 110412769 110412982 -66561158 - MARNA DNA Mariner -338 248 11 258 32 0 0 chrX 110414230 110414261 -66559879 + (TG)n Simple_repeat Simple_repeat 1 31 0 349 227 55 0 chrX 110414320 110414430 -66559710 - L1ME4a LINE L1 -212 5909 5794 205 240 20 0 chrX 110414657 110414707 -66559433 + (TA)n Simple_repeat Simple_repeat 1 51 0 3233 201 25 2 chrX 110414707 110415335 -66558805 - MER82 DNA MER2_type 0 653 11 235 225 75 81 chrX 110415342 110415502 -66558638 - L1ME4a LINE L1 -164 5957 5799 1958 230 41 12 chrX 110415559 110416068 -66558072 + L1MC2 LINE L1 3843 4366 -1780 1779 168 0 10 chrX 110416080 110416384 -66557756 - L1M2 LINE L1 -563 5728 5428 20172 167 25 14 chrX 110416410 110423969 -66550171 - L1MA1 LINE L1 -9 7712 11 271 73 0 0 chrX 110423969 110424010 -66550130 - L1M2 LINE L1 -854 5446 5406 2692 147 37 24 chrX 110424014 110424560 -66549580 + L1MA7 LINE L1 5739 6291 0 5229 195 35 20 chrX 110424567 110426511 -66547629 + L1MC2 LINE L1 4375 6344 0 1580 189 24 63 chrX 110428351 110428731 -66545409 + MLT1A2 LTR MaLR 6 370 -4 1647 152 7 73 chrX 110429945 110430247 -66543893 - AluJo SINE Alu -25 287 6 2595 47 0 0 chrX 110430525 110430824 -66543316 - AluY SINE Alu -12 299 1 318 26 0 0 chrX 110431995 110432034 -66542106 + (TC)n Simple_repeat Simple_repeat 1 39 0 261 0 0 0 chrX 110432033 110432062 -66542078 + (CA)n Simple_repeat Simple_repeat 1 29 0 * 187 233 23 0 chrX 110432586 110432629 -66541511 + MIR3 SINE MIR 124 167 -41 366 171 0 40 chrX 110432803 110432879 -66541261 - MER1B DNA MER1_type 0 333 261 * 1073 162 100 24 chrX 110432875 110433085 -66541055 - MER1B DNA MER1_type -71 226 1 884 90 0 0 chrX 110434032 110434143 -66539997 - AluY SINE Alu -200 111 1 262 292 62 0 chrX 110434176 110434241 -66539899 - MIR SINE MIR -162 100 32 553 293 22 17 chrX 110434518 110434699 -66539441 - MIR SINE MIR -29 233 52 23 0 0 0 chrX 110435042 110435065 -66539075 + AT_rich Low_complexity Low_complexity 1 23 0 1023 117 0 0 chrX 110435711 110435848 -66538292 - AluSq/x SINE Alu -174 138 2 533 254 82 0 chrX 110436487 110436621 -66537519 + MIR3 SINE MIR 57 201 -7 22 0 0 0 chrX 110437573 110437595 -66536545 + AT_rich Low_complexity Low_complexity 1 22 0 13523 216 30 31 chrX 110437599 110440469 -66533671 - L1PA15 LINE L1 -3 6813 3942 743 80 18 0 chrX 110440469 110440581 -66533559 + L1MB4 LINE L1 6053 6166 -14 13523 216 30 31 chrX 110440581 110441672 -66532468 - L1PA15 LINE L1 -2874 3942 2852 2317 86 0 23 chrX 110441672 110441976 -66532164 - AluY SINE Alu -14 297 1 13523 216 30 31 chrX 110441976 110443590 -66530550 - L1PA15 LINE L1 -3964 2852 1236 2276 289 35 22 chrX 110443703 110444418 -66529722 - L1PA15 LINE L1 -6063 724 1 374 191 0 0 chrX 110444423 110444491 -66529649 + ERVL LTR ERVL 2077 2144 -3620 210 281 0 0 chrX 110444675 110444732 -66529408 - L2 LINE L2 0 3313 3257 233 292 42 56 chrX 110445622 110445766 -66528374 - MIR SINE MIR -50 212 71 513 289 70 6 chrX 110445860 110446016 -66528124 - MIR SINE MIR -92 170 5 12602 157 25 18 chrX 110446325 110447776 -66526364 + L1PA8A LINE L1 1 1441 -5020 2185 114 7 3 chrX 110447776 110448073 -66526067 + AluSq SINE Alu 1 298 -15 12602 157 25 18 chrX 110448073 110450356 -66523784 + L1PA8A LINE L1 1441 3826 -2635 203 61 30 0 chrX 110450356 110450389 -66523751 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1362 109 0 36 chrX 110450389 110450610 -66523530 + L1PA6 LINE L1 5942 6154 0 * 11994 118 25 14 chrX 110450607 110453197 -66520943 + L1PA8A LINE L1 3826 6444 -2 7633 71 0 2 chrX 110456024 110457807 -66516333 - L1PA6 LINE L1 0 6154 4374 5633 99 44 112 chrX 110457960 110458167 -66515973 - Tigger3b DNA MER2_type -1802 1227 1007 684 195 0 0 chrX 110458167 110458285 -66515855 - FLAM_C SINE Alu -25 118 1 5633 99 44 112 chrX 110458285 110458378 -66515762 - Tigger3b DNA MER2_type -2022 1007 909 1923 169 13 0 chrX 110458378 110458679 -66515461 + AluJb SINE Alu 1 305 -7 5633 99 44 112 chrX 110458679 110459580 -66514560 - Tigger3b DNA MER2_type -2120 909 2 205 204 20 20 chrX 110459618 110459667 -66514473 + L2 LINE L2 3215 3263 -9 2129 133 0 0 chrX 110459935 110460229 -66513911 - AluSc SINE Alu -15 294 1 1204 150 19 27 chrX 110460318 110460578 -66513562 - L1MB3 LINE L1 0 6183 5926 295 211 16 36 chrX 110460778 110460937 -66513203 - L1M4 LINE L1 -5796 769 2 244 277 50 20 chrX 110461402 110461503 -66512637 + LTR40b LTR ERVL 229 332 -130 201 225 0 0 chrX 110461705 110461745 -66512395 + (TG)n Simple_repeat Simple_repeat 1 40 0 633 301 49 26 chrX 110462056 110462282 -66511858 - MIR SINE MIR -29 233 3 1439 133 24 0 chrX 110462681 110462892 -66511248 + AluSg/x SINE Alu 74 289 -23 28 48 0 0 chrX 110462892 110462934 -66511206 + AT_rich Low_complexity Low_complexity 1 42 0 1684 156 57 18 chrX 110462965 110463299 -66510841 + THE1C LTR MaLR 29 375 0 10136 103 16 67 chrX 110463299 110464965 -66509175 + THE1C-int LTR MaLR 1 1580 0 1882 159 52 25 chrX 110464965 110465330 -66508810 + THE1C LTR MaLR 1 375 0 2769 228 52 14 chrX 110465330 110466393 -66507747 - L1ME1 LINE L1 -41 6125 5019 3094 77 53 2 chrX 110466396 110466827 -66507313 - MLT2A2 LTR ERVL 0 453 1 6394 73 24 0 chrX 110466827 110467698 -66506442 - HERVL-A2 LTR ERVL 0 5654 4763 1480 188 25 35 chrX 110467703 110468101 -66506039 - L1ME1 LINE L1 -1131 5015 4622 4992 110 9 12 chrX 110468133 110468912 -66505228 - L1MA2 LINE L1 0 6304 5528 405 152 0 76 chrX 110468950 110469055 -66505085 - L1P LINE L1 -933 5213 5117 * 1085 271 32 27 chrX 110469053 110469492 -66504648 - L1ME1 LINE L1 -1823 4323 3883 352 215 102 102 chrX 110469761 110469938 -66504202 - L2 LINE L2 -13 3300 3124 243 346 49 0 chrX 110470037 110470118 -66504022 + MER91C DNA MER1_type 24 108 -32 579 348 100 44 chrX 110470126 110470849 -66503291 - L2 LINE L2 -233 3039 2272 331 356 22 22 chrX 110470851 110471031 -66503109 - L2 LINE L2 -711 2603 2424 2252 92 3 0 chrX 110472440 110472722 -66501418 + AluSp SINE Alu 1 283 -30 264 167 30 22 chrX 110473123 110473203 -66500937 - L1ME4a LINE L1 -53 6059 1218 857 144 0 22 chrX 110473336 110473475 -66500665 - AluJo SINE Alu -176 136 1 470 301 55 6 chrX 110474179 110474342 -66499798 + L2 LINE L2 2365 2535 -779 648 275 79 66 chrX 110474351 110474944 -66499196 + L1ME4a LINE L1 5519 6119 -2 1885 167 3 22 chrX 110475920 110476238 -66497902 - AluSx SINE Alu 0 312 1 188 297 264 0 chrX 110476444 110476535 -66497605 - L2 LINE L2 -7 3265 3151 359 226 43 61 chrX 110477036 110477151 -66496989 - L2 LINE L2 -4 3309 3197 449 300 128 22 chrX 110478253 110478526 -66495614 + L1ME4a LINE L1 5798 6099 -22 385 213 37 29 chrX 110478530 110478666 -66495474 - L1ME4a LINE L1 -16 6105 5969 21 57 0 0 chrX 110478682 110478717 -66495423 + AT_rich Low_complexity Low_complexity 1 35 0 965 264 52 36 chrX 110479108 110479353 -66494787 - L1ME3 LINE L1 -288 5890 5650 725 264 117 0 chrX 110479353 110479550 -66494590 + MER58A DNA MER1_type 1 220 -4 965 264 52 36 chrX 110479550 110479955 -66494185 - L1ME3 LINE L1 -528 5650 5236 372 299 112 15 chrX 110479970 110480167 -66493973 - L1ME3 LINE L1 -968 5178 4963 257 231 159 16 chrX 110480172 110480354 -66493786 - L1ME4a LINE L1 -226 5895 5688 235 338 13 13 chrX 110480446 110480523 -66493617 - L2 LINE L2 0 3272 3196 201 355 13 0 chrX 110481354 110481430 -66492710 - L2 LINE L2 -612 2702 2626 302 0 26 0 chrX 110481450 110481488 -66492652 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 185 192 0 19 chrX 110481544 110481596 -66492544 + CT-rich Low_complexity Low_complexity 1 51 0 312 244 122 26 chrX 110481607 110481722 -66492418 + L2 LINE L2 3181 3306 -7 213 163 0 0 chrX 110482050 110482099 -66492041 + (TAA)n Simple_repeat Simple_repeat 1 49 0 573 222 34 0 chrX 110482798 110482915 -66491225 - MIR3 SINE MIR -14 194 74 1631 134 25 1 chrX 110483726 110484131 -66490009 - L1M2 LINE L1 -741 5550 5137 30 0 0 0 chrX 110484681 110484711 -66489429 + AT_rich Low_complexity Low_complexity 1 30 0 1610 50 5 0 chrX 110484711 110484911 -66489229 - L1PA5 LINE L1 -8 6146 5946 353 211 19 58 chrX 110485285 110485389 -66488751 - L2 LINE L2 0 3272 3173 291 239 28 28 chrX 110486777 110486848 -66487292 + L2 LINE L2 3193 3263 -9 237 65 0 0 chrX 110486855 110486886 -66487254 + (TG)n Simple_repeat Simple_repeat 2 32 0 687 257 68 66 chrX 110486961 110487400 -66486740 - MLT1H LTR MaLR -6 543 1 848 285 84 34 chrX 110488378 110488701 -66485439 + L3 LINE CR1 1048 1386 -191 379 279 128 29 chrX 110489049 110489221 -66484919 - MIR3 SINE MIR -4 204 16 31 26 0 0 chrX 110489343 110489381 -66484759 + AT_rich Low_complexity Low_complexity 1 38 0 1552 154 124 0 chrX 110491568 110491841 -66482299 + AluJb SINE Alu 1 307 -5 293 373 31 12 chrX 110491856 110492017 -66482123 - MIR SINE MIR -70 192 29 873 215 27 11 chrX 110492718 110492904 -66481236 - MER5A DNA MER1_type 0 189 1 602 307 19 10 chrX 110493077 110493282 -66480858 + MIR SINE MIR 2 208 -54 676 229 153 0 chrX 110494003 110494160 -66479980 + MER5A DNA MER1_type 9 189 0 325 278 50 72 chrX 110494440 110494620 -66479520 + MER5B DNA MER1_type 1 176 -2 200 240 0 0 chrX 110494677 110494727 -66479413 + L2 LINE L2 3264 3313 0 192 317 133 8 chrX 110494733 110494853 -66479287 + L2 LINE L2 3167 3301 -12 264 278 14 14 chrX 110494878 110494950 -66479190 + MIR SINE MIR 31 102 -160 461 304 7 36 chrX 110494966 110495104 -66479036 - L2 LINE L2 0 3313 3180 28199 118 11 66 chrX 110495195 110497832 -66476308 + L1PA7 LINE L1 1 2784 -3370 210 37 0 0 chrX 110497832 110497859 -66476281 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 28199 118 11 66 chrX 110497859 110498077 -66476063 + L1PA7 LINE L1 2784 3013 -3141 2499 61 0 0 chrX 110498077 110498371 -66475769 - AluY SINE Alu -17 294 1 28199 118 11 66 chrX 110498371 110502044 -66472096 + L1PA7 LINE L1 3013 6152 -2 297 364 10 50 chrX 110502105 110502303 -66471837 - L2 LINE L2 -244 3028 2839 341 329 15 0 chrX 110502824 110502961 -66471179 + MIR SINE MIR 100 238 -24 261 215 13 51 chrX 110503007 110503086 -66471054 - L2 LINE L2 -79 3234 3159 308 324 14 0 chrX 110503623 110503768 -66470372 + (TG)n Simple_repeat Simple_repeat 1 147 0 35 24 0 0 chrX 110503909 110503951 -66470189 + AT_rich Low_complexity Low_complexity 1 42 0 227 263 36 95 chrX 110503953 110504090 -66470050 - L2 LINE L2 -332 2940 2812 500 103 83 0 chrX 110504096 110504252 -66469888 + (TA)n Simple_repeat Simple_repeat 1 169 0 697 55 79 9 chrX 110504282 110504503 -66469637 + (TA)n Simple_repeat Simple_repeat 1 236 0 370 300 53 54 chrX 110506598 110506793 -66467347 + MIR SINE MIR 3 204 -54 755 232 60 0 chrX 110507102 110507121 -66467019 - MER91B DNA MER1_type -10 180 164 180 77 0 0 chrX 110507121 110507147 -66466993 + (TG)n Simple_repeat Simple_repeat 1 26 0 755 232 60 0 chrX 110507147 110507295 -66466845 - MER91B DNA MER1_type -26 164 3 1769 236 56 17 chrX 110507464 110507931 -66466209 - MLT1E2 LTR MaLR -1 625 141 400 370 74 4 chrX 110508240 110508470 -66465670 + L2 LINE L2 2608 2853 -461 184 214 71 0 chrX 110508819 110508861 -66465279 + L2 LINE L2 3269 3313 0 818 187 0 0 chrX 110510166 110510289 -66463851 - AluJb SINE Alu -188 124 2 25 0 0 0 chrX 110510347 110510372 -66463768 + AT_rich Low_complexity Low_complexity 1 25 0 444 358 80 6 chrX 110510433 110510609 -66463531 - MIR3 SINE MIR -16 192 4 916 26 0 9 chrX 110510618 110510753 -66463387 - L1PA2 LINE L1 0 6155 6042 2580 37 0 3 chrX 110511358 110511657 -66462483 - AluY SINE Alu -13 298 1 3922 102 19 11 chrX 110512024 110512659 -66461481 - L1MA3 LINE L1 -58 6247 5608 * 7305 195 20 1 chrX 110512657 110514046 -66460094 - MSTA-int LTR MaLR -235 1416 1 2563 143 27 2 chrX 110514086 110514499 -66459641 - MSTA LTR MaLR -5 423 1 3611 135 4 24 chrX 110514499 110515184 -66458956 - L1PA12 LINE L1 -4468 3116 2438 3425 280 52 11 chrX 110515235 110516282 -66457858 - L1PA12 LINE L1 -6472 1109 20 2766 163 7 4 chrX 110516283 110516828 -66457312 - L1 LINE L1 -1432 4714 4168 1204 127 0 21 chrX 110516828 110517017 -66457123 + THE1B LTR MaLR 2 186 -178 2762 53 2 38 chrX 110517017 110517411 -66456729 + L1PA8 LINE L1 5527 5906 -266 679 79 0 20 chrX 110517415 110517516 -66456624 + L1PA8 LINE L1 6074 6172 0 1091 135 10 40 chrX 110517517 110517717 -66456423 + THE1B LTR MaLR 171 364 0 1713 194 120 5 chrX 110517717 110518134 -66456006 - L1 LINE L1 -1973 4173 3709 * 9626 154 26 35 chrX 110518133 110520119 -66454021 + L1M1 LINE L1 1316 3284 -4281 5253 98 13 4 chrX 110520124 110520872 -66453268 - L1PA10 LINE L1 -1 6482 5728 7498 31 10 0 chrX 110520873 110521822 -66452318 - L1PA4 LINE L1 0 6155 5203 16282 40 19 1 chrX 110521822 110523984 -66450156 + L1P LINE L1 1552 3752 -2394 * 21627 179 36 17 chrX 110523980 110529196 -66444944 - L1PA10 LINE L1 -740 5743 293 1111 233 65 18 chrX 110729197 110729637 -66244503 + L1P5 LINE L1 4998 5457 -694 7248 114 51 8 chrX 110729686 110730866 -66243274 - Tigger3b DNA MER2_type 0 1231 2 4179 183 38 57 chrX 110730964 110731805 -66242335 + L1M2a LINE L1 13 837 -6331 351 0 0 0 chrX 110731805 110731844 -66242296 + (CA)n Simple_repeat Simple_repeat 1 39 0 4179 183 38 57 chrX 110731844 110731917 -66242223 + L1M2a LINE L1 837 910 -6258 4966 108 13 87 chrX 110731917 110732169 -66241971 + Tigger3(Golem) DNA MER2_type 2166 2435 -593 454 145 0 0 chrX 110732169 110732252 -66241888 + L1PB4 LINE L1 6073 6155 -1 4966 108 13 87 chrX 110732252 110732922 -66241218 + Tigger3(Golem) DNA MER2_type 2435 3020 -8 886 276 67 18 chrX 110732929 110733425 -66240715 - L1M4 LINE L1 -3121 3025 2506 6959 26 0 2 chrX 110733430 110734267 -66239873 - L1PA3 LINE L1 0 6155 5341 * 9282 28 0 0 chrX 110734264 110735378 -66238762 + L1PA3 LINE L1 4230 5343 -803 306 226 73 16 chrX 110735376 110735500 -66238640 - L1M4 LINE L1 -3621 2525 2395 * 1673 174 14 10 chrX 110735508 110735802 -66238338 + AluJb SINE Alu 1 295 -17 2403 88 54 20 chrX 110735854 110736206 -66237934 - THE1B LTR MaLR 0 364 1 276 260 164 102 chrX 110736573 110736750 -66237390 - MIR3 SINE MIR -5 203 16 248 334 184 32 chrX 110737770 110738297 -66235843 - L2 LINE L2 -225 3047 2439 473 100 144 0 chrX 110738670 110738760 -66235380 - MER41B LTR ERV1 -88 547 445 26 0 0 0 chrX 110738786 110738812 -66235328 + AT_rich Low_complexity Low_complexity 1 26 0 689 176 127 86 chrX 110739265 110739515 -66234625 + MLT2D LTR ERVL 5 296 -118 306 155 48 19 chrX 110739531 110739634 -66234506 + CT-rich Low_complexity Low_complexity 5 110 0 23 0 0 0 chrX 110740929 110740952 -66233188 + AT_rich Low_complexity Low_complexity 1 23 0 3101 204 23 33 chrX 110740954 110741688 -66232452 - L1ME1 LINE L1 -5 6161 5435 5535 155 23 4 chrX 110741968 110743939 -66230201 + L1PA16 LINE L1 4120 6158 -8 5961 147 41 8 chrX 110744150 110744636 -66229504 - L1MA4 LINE L1 -2 6298 5829 333 0 0 0 chrX 110744636 110744673 -66229467 + (TG)n Simple_repeat Simple_repeat 2 38 0 5961 147 41 8 chrX 110744673 110745874 -66228266 - L1MA4 LINE L1 -471 5829 4553 3775 142 61 13 chrX 110745874 110746566 -66227574 + L1MA6 LINE L1 5561 6300 0 485 269 78 78 chrX 110746578 110746744 -66227396 + L1MC4a LINE L1 3038 3206 -2940 1588 147 54 47 chrX 110746744 110747023 -66227117 + AluJo SINE Alu 12 292 -20 485 269 78 78 chrX 110747023 110747164 -66226976 + L1MC4a LINE L1 3205 3345 -2801 313 340 190 0 chrX 110747165 110747433 -66226707 + L1MC4a LINE L1 5502 5820 -1988 1868 135 14 0 chrX 110747440 110747745 -66226395 + AluSx SINE Alu 1 309 0 1679 175 12 6 chrX 110747757 110748083 -66226057 + L1MB7 LINE L1 5674 6001 -183 3884 130 16 16 chrX 110748137 110748492 -66225648 - L1PB3 LINE L1 -6 6148 5794 414 0 0 0 chrX 110748492 110748538 -66225602 + (TG)n Simple_repeat Simple_repeat 2 47 0 3884 130 16 16 chrX 110748538 110748641 -66225499 - L1PB3 LINE L1 -360 5794 5692 2083 122 7 0 chrX 110748641 110748929 -66225211 - AluSx SINE Alu -20 292 3 3884 130 16 16 chrX 110748929 110749099 -66225041 - L1PB3 LINE L1 -461 5693 5519 673 144 0 24 chrX 110749099 110749223 -66224917 + L1MB7 LINE L1 6044 6165 -19 323 300 135 45 chrX 110749244 110749444 -66224696 + L1MC4a LINE L1 5814 6031 -1777 682 316 24 20 chrX 110749825 110750075 -66224065 - L3 LINE CR1 -5 1572 1322 210 71 0 0 chrX 110750084 110750112 -66224028 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chrX 110750236 110750257 -66223883 + AT_rich Low_complexity Low_complexity 1 21 0 482 262 79 18 chrX 110750527 110750691 -66223449 + MIR3 SINE MIR 33 206 -2 6622 219 82 51 chrX 110751430 110752492 -66221648 + L1MDa LINE L1 17 1045 -5495 2313 102 0 7 chrX 110752492 110752796 -66221344 + AluSx SINE Alu 1 302 -10 7673 21 0 3 chrX 110752796 110753981 -66220159 + L1PA4 LINE L1 4954 6149 -6 6622 219 82 51 chrX 110753981 110754499 -66219641 + L1MDa LINE L1 1045 1545 -4995 2326 104 5 70 chrX 110754499 110754913 -66219227 + L1PB1 LINE L1 5765 6151 0 6622 219 82 51 chrX 110754913 110755390 -66218750 + L1MDa LINE L1 1545 2140 -4400 848 204 244 0 chrX 110755390 110755620 -66218520 + L1MD2 LINE L1 6051 6336 -23 427 310 208 14 chrX 110755974 110756190 -66217950 - MIR SINE MIR 0 262 5 35165 31 3 17 chrX 110756583 110761815 -66212325 + L1PA4 LINE L1 1 6152 -3 1514 155 40 29 chrX 110762223 110762500 -66211640 + AluSx SINE Alu 1 280 -32 1031 81 0 7 chrX 110762503 110762651 -66211489 + (GGAA)n Simple_repeat Simple_repeat 3 149 0 295 278 9 83 chrX 110763698 110763806 -66210334 + MIR3 SINE MIR 90 189 -19 325 293 107 107 chrX 110764005 110764319 -66209821 - L2 LINE L2 0 3272 2956 1663 112 88 88 chrX 110764319 110764694 -66209446 + THE1C LTR MaLR 1 375 0 325 293 107 107 chrX 110764694 110764819 -66209321 - L2 LINE L2 -315 2957 2833 677 281 118 8 chrX 110764953 110765191 -66208949 + MLT1J LTR MaLR 1 264 -247 211 227 197 0 chrX 110765257 110765323 -66208817 + L2 LINE L2 3190 3268 -4 1588 186 7 43 chrX 110766624 110766925 -66207215 + AluJo SINE Alu 1 290 -22 735 170 21 7 chrX 110767480 110767621 -66206519 + L1MB8 LINE L1 6033 6175 -3 243 295 0 0 chrX 110767746 110767807 -66206333 + (CA)n Simple_repeat Simple_repeat 2 62 0 1048 265 8 0 chrX 110768014 110768252 -66205888 + MIR SINE MIR 8 247 -15 2352 46 43 30 chrX 110768588 110768892 -66205248 - AluY SINE Alu -3 308 1 451 264 227 19 chrX 110770228 110770444 -66203696 - MIR SINE MIR 0 262 2 1922 144 27 10 chrX 110770473 110770765 -66203375 + AluJb SINE Alu 1 297 -15 1940 135 0 39 chrX 110771500 110771811 -66202329 - AluJo SINE Alu -13 299 1 348 167 0 0 chrX 110772424 110772478 -66201662 + L2 LINE L2 3256 3309 -4 874 163 0 15 chrX 110772587 110772722 -66201418 + FLAM_C SINE Alu 1 133 0 2323 107 0 0 chrX 110773063 110773372 -66200768 - AluSc SINE Alu 0 309 1 190 176 0 0 chrX 110773802 110773836 -66200304 - MIR SINE MIR -27 235 202 1182 206 55 36 chrX 110773840 110774170 -66199970 - MER46C DNA MER2_type -1 337 2 979 111 7 0 chrX 110774171 110774306 -66199834 + AluSq/x SINE Alu 1 136 -176 2312 85 0 31 chrX 110774306 110774625 -66199515 + AluSc SINE Alu 1 309 0 784 265 16 0 chrX 110774638 110774827 -66199313 - MIR SINE MIR -67 195 4 363 250 125 25 chrX 110774935 110775055 -66199085 - L2 LINE L2 0 3313 3182 223 322 0 0 chrX 110775197 110775256 -66198884 - L2 LINE L2 -3 3269 3211 841 261 85 71 chrX 110776059 110776617 -66197523 + L2 LINE L2 2736 3309 -4 399 249 128 101 chrX 110779173 110779510 -66194630 + L1M2 LINE L1 486 831 -6018 219 279 21 29 chrX 110779520 110779660 -66194480 + G-rich Low_complexity Low_complexity 3 141 0 839 241 100 17 chrX 110780112 110780353 -66193787 - MIR SINE MIR 0 262 2 1627 166 60 35 chrX 110781646 110781965 -66192175 + MLT1B LTR MaLR 64 390 0 2359 197 104 21 chrX 110782021 110782580 -66191560 - MLT1E1 LTR MaLR -47 607 3 347 60 20 0 chrX 110782657 110782707 -66191433 + (CA)n Simple_repeat Simple_repeat 1 51 0 244 241 0 17 chrX 110782948 110783006 -66191134 + L1ME1 LINE L1 572 628 -5768 * 1568 207 151 5 chrX 110782994 110783404 -66190736 + L1ME1 LINE L1 4483 4952 -1263 1416 142 81 8 chrX 110783400 110783661 -66190479 - L1MA7 LINE L1 -688 5603 5324 * 3806 139 32 26 chrX 110783661 110784309 -66189831 + L1MA7 LINE L1 5630 6286 -5 3634 200 43 32 chrX 110784315 110785587 -66188553 + L1ME1 LINE L1 4942 6230 -5 669 212 0 0 chrX 110786051 110786198 -66187942 + FLAM_A SINE Alu 1 147 0 235 298 0 0 chrX 110786238 110786295 -66187845 + MLT1K LTR MaLR 528 584 -4 681 178 0 67 chrX 110786763 110786839 -66187301 - AluJo/FRAM SINE Alu -16 296 230 2057 96 48 0 chrX 110786839 110787166 -66186974 + AluSx SINE Alu 1 340 0 681 178 0 67 chrX 110787166 110787223 -66186917 - AluJo/FRAM SINE Alu -82 230 171 2491 67 0 0 chrX 110787452 110787749 -66186391 - AluY SINE Alu -14 297 1 519 356 62 48 chrX 110787945 110788282 -66185858 + L2 LINE L2 2927 3268 -4 831 284 13 4 chrX 110789056 110789281 -66184859 - MIR SINE MIR -13 249 23 21 0 0 0 chrX 110789376 110789397 -66184743 + AT_rich Low_complexity Low_complexity 1 21 0 1925 148 10 7 chrX 110789633 110789931 -66184209 + AluSx SINE Alu 1 299 -13 1057 184 5 24 chrX 110789940 110790146 -66183994 + AluJo SINE Alu 2 203 -109 293 109 18 0 chrX 110790190 110790245 -66183895 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 25 31 0 0 chrX 110790245 110790277 -66183863 + AT_rich Low_complexity Low_complexity 1 32 0 243 205 72 96 chrX 110790277 110790360 -66183780 - MIR3 SINE MIR -1 207 127 744 315 60 55 chrX 110790399 110790952 -66183188 - L2 LINE L2 -5 3308 2750 2201 122 0 3 chrX 110790952 110791264 -66182876 + AluSx SINE Alu 1 311 -1 744 315 60 55 chrX 110791264 110791317 -66182823 - L2 LINE L2 -563 2750 2699 1207 194 73 78 chrX 110793290 110793336 -66180804 - MLT2D LTR ERVL 0 414 369 426 20 0 0 chrX 110793336 110793387 -66180753 + (CA)n Simple_repeat Simple_repeat 2 52 0 1207 194 73 78 chrX 110793387 110793915 -66180225 - MLT2D LTR ERVL -45 369 3 1473 166 7 49 chrX 110794257 110794541 -66179599 - AluJo SINE Alu -40 272 1 2375 82 3 0 chrX 110795348 110795641 -66178499 - AluSp SINE Alu -19 294 1 335 245 35 63 chrX 110796092 110796235 -66177905 + L2 LINE L2 1959 2097 -1217 420 358 53 0 chrX 110796244 110796470 -66177670 + L2 LINE L2 2392 2629 -685 * 834 248 31 5 chrX 110796455 110796677 -66177463 + MIR SINE MIR 33 260 -2 360 292 123 83 chrX 110796686 110797033 -66177107 + L2 LINE L2 2641 2973 -340 2146 133 0 0 chrX 110797033 110797335 -66176805 - AluSq SINE Alu -11 302 1 360 292 123 83 chrX 110797335 110797649 -66176491 + L2 LINE L2 2973 3313 0 2208 120 0 3 chrX 110797768 110798076 -66176064 - AluSg1 SINE Alu -2 307 1 251 376 9 0 chrX 110798833 110798942 -66175198 + MIR3 SINE MIR 58 167 -41 4072 200 87 49 chrX 110798942 110799405 -66174735 - L1MB1 LINE L1 -1 6188 5744 2256 117 0 0 chrX 110799405 110799703 -66174437 - AluSx SINE Alu -14 298 1 1681 157 23 27 chrX 110799707 110800007 -66174133 - AluJo SINE Alu -13 299 1 4072 200 87 49 chrX 110800007 110801531 -66172609 - L1MB1 LINE L1 -447 5742 4110 387 0 0 0 chrX 110801718 110801761 -66172379 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chrX 110801761 110801781 -66172359 + (TTG)n Simple_repeat Simple_repeat 1 20 0 586 108 0 0 chrX 110801782 110801856 -66172284 - AluSq SINE Alu -48 265 192 1120 78 14 7 chrX 110801856 110801997 -66172143 - AluSq SINE Alu -170 142 1 1399 159 4 59 chrX 110802077 110802195 -66171945 + AluJo SINE Alu 12 135 -177 2164 96 0 0 chrX 110802195 110802465 -66171675 - AluSg SINE Alu -20 290 21 1399 159 4 59 chrX 110802465 110802617 -66171523 + AluJo SINE Alu 135 267 -45 279 0 0 0 chrX 110802639 110802670 -66171470 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 847 169 7 7 chrX 110802762 110802898 -66171242 + FLAM_C SINE Alu 2 137 -6 1436 185 3 57 chrX 110802900 110803214 -66170926 + AluJo SINE Alu 1 297 -15 22 0 0 0 chrX 110804012 110804034 -66170106 + AT_rich Low_complexity Low_complexity 1 22 0 556 208 10 0 chrX 110804510 110804606 -66169534 + FLAM_A SINE Alu 26 122 -20 333 109 0 0 chrX 110805467 110805522 -66168618 + (CATA)n Simple_repeat Simple_repeat 2 56 0 1157 158 16 5 chrX 110805525 110805709 -66168431 - AluJb SINE Alu -23 289 104 481 256 119 93 chrX 110805715 110806101 -66168039 - L1ME3A LINE L1 -236 5934 5539 525 303 42 18 chrX 110806204 110806369 -66167771 + MIR3 SINE MIR 34 202 -6 221 294 118 12 chrX 110806360 110806445 -66167695 - MIR SINE MIR -113 149 56 * 486 261 0 36 chrX 110806868 110807006 -66167134 + L2 LINE L2 3180 3312 -1 217 273 126 56 chrX 110808126 110808269 -66165871 + L2 LINE L2 3159 3311 -2 21 0 0 0 chrX 110808566 110808587 -66165553 + AT_rich Low_complexity Low_complexity 1 21 0 288 222 61 10 chrX 110809542 110809641 -66164499 + L1ME4a LINE L1 6015 6118 -3 1652 159 22 53 chrX 110809641 110809961 -66164179 + AluJo SINE Alu 1 310 -2 2116 95 15 0 chrX 110810257 110810531 -66163609 + AluSp SINE Alu 1 278 -35 996 93 0 19 chrX 110810535 110810697 -66163443 + (GGAA)n Simple_repeat Simple_repeat 3 161 0 2093 129 3 0 chrX 110810788 110811082 -66163058 - AluSx SINE Alu -17 295 1 902 199 12 6 chrX 110811967 110812133 -66162007 + FRAM SINE Alu 1 167 -9 442 285 122 69 chrX 110812182 110812733 -66161407 + L2 LINE L2 2192 2771 -543 5176 100 16 12 chrX 110812838 110813526 -66160614 + LTR8 LTR ERV1 1 691 0 836 154 122 19 chrX 110813682 110813838 -66160302 - FAM SINE Alu 0 175 4 282 228 0 0 chrX 110813801 110813858 -66160282 - AluSc SINE Alu -125 174 118 1899 141 3 0 chrX 110814089 110814373 -66159767 - AluJb SINE Alu -27 285 1 1817 163 0 3 chrX 110814562 110814844 -66159296 - AluSx SINE Alu -29 283 3 259 195 0 69 chrX 110814922 110815009 -66159131 - L1ME4a LINE L1 -65 6056 5976 804 227 48 5 chrX 110815061 110815268 -66158872 - MIR SINE MIR -42 220 5 234 308 209 39 chrX 110815281 110815463 -66158677 + L2 LINE L2 2849 3061 -211 821 204 17 117 chrX 110816343 110816583 -66157557 + L2 LINE L2 2244 2459 -855 362 229 12 0 chrX 110816652 110816735 -66157405 + L2 LINE L2 2920 3003 -310 2179 100 0 4 chrX 110816983 110817283 -66156857 - AluSg SINE Alu 0 299 1 484 181 0 0 chrX 110817430 110817502 -66156638 - FLAM SINE Alu -26 117 46 1614 177 8 0 chrX 110817907 110818173 -66155967 + AluJo SINE Alu 1 268 -44 290 45 23 0 chrX 110818186 110818230 -66155910 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 686 194 91 46 chrX 110818825 110819000 -66155140 + MIR3 SINE MIR 23 205 -3 1562 165 9 86 chrX 110820522 110820849 -66153291 - AluJb SINE Alu -2 310 9 27 0 0 0 chrX 110820967 110820994 -66153146 + AT_rich Low_complexity Low_complexity 1 27 0 1388 246 56 69 chrX 110821002 110821522 -66152618 + Charlie8 DNA MER1_type 9 521 -1896 244 227 45 15 chrX 110821518 110821584 -66152556 + Charlie8 DNA MER1_type 1361 1428 -989 * 972 161 0 0 chrX 110821719 110821868 -66152272 + FRAM SINE Alu 1 146 -30 848 101 34 28 chrX 110821898 110822077 -66152063 + GA-rich Low_complexity Low_complexity 1 180 0 324 0 0 0 chrX 110822229 110822265 -66151875 + (CA)n Simple_repeat Simple_repeat 2 37 0 542 41 14 0 chrX 110822579 110822652 -66151488 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 1827 153 7 3 chrX 110823176 110823470 -66150670 - AluJo SINE Alu -7 305 11 680 269 11 29 chrX 110823657 110823729 -66150411 - MIR3 SINE MIR -2 206 134 2613 193 35 10 chrX 110823729 110824222 -66149918 - MLT1D LTR MaLR 0 505 1 680 269 11 29 chrX 110824222 110824324 -66149816 - MIR3 SINE MIR -74 134 35 483 272 41 24 chrX 110825743 110825912 -66148228 + MIR SINE MIR 77 248 -14 221 197 0 98 chrX 110826175 110826236 -66147904 - MIR3 SINE MIR -4 204 150 435 359 0 18 chrX 110826391 110826558 -66147582 - MIR3 SINE MIR -41 167 4 2919 53 9 0 chrX 110827103 110827443 -66146697 + L1PA7 LINE L1 5804 6146 -8 698 156 0 0 chrX 110827466 110827562 -66146578 + FLAM_C SINE Alu 27 122 -21 243 0 0 0 chrX 110827562 110827589 -66146551 + (GA)n Simple_repeat Simple_repeat 2 28 0 194 194 81 65 chrX 110827675 110827737 -66146403 + L2 LINE L2 3193 3255 -17 1968 123 9 35 chrX 110827849 110828165 -66145975 + AluSx SINE Alu 1 308 -4 619 181 61 37 chrX 110828372 110828531 -66145609 + MIR SINE MIR 3 163 -63 1180 228 121 105 chrX 110828544 110829033 -66145107 + MER21B LTR ERV1 13 520 -343 2139 125 16 0 chrX 110829033 110829336 -66144804 - AluSx SINE Alu -4 308 1 1180 228 121 105 chrX 110829336 110829592 -66144548 + MER21B LTR ERV1 520 770 -93 250 132 0 0 chrX 110829746 110829784 -66144356 + MIR SINE MIR 159 196 -66 456 19 0 0 chrX 110829963 110830016 -66144124 + (TC)n Simple_repeat Simple_repeat 2 54 0 812 165 0 0 chrX 110831984 110832105 -66142035 - FLAM_A SINE Alu -12 121 1 1094 233 57 8 chrX 110833016 110833261 -66140879 - MIR SINE MIR -3 259 3 2391 93 0 0 chrX 110833495 110833797 -66140343 + AluSx SINE Alu 1 302 -10 440 255 69 40 chrX 110833935 110834084 -66140056 + MIR SINE MIR 38 190 -65 673 178 8 59 chrX 110834257 110834375 -66139765 + FLAM_A SINE Alu 1 112 -30 195 42 0 0 chrX 110834375 110834399 -66139741 + (CA)n Simple_repeat Simple_repeat 1 24 0 250 229 0 0 chrX 110834747 110834795 -66139345 - L2 LINE L2 -6 3266 3219 1692 150 42 36 chrX 110834917 110835224 -66138916 + AluJo SINE Alu 4 312 0 656 217 87 57 chrX 110835598 110835828 -66138312 - L1ME3 LINE L1 0 6170 5934 2140 93 31 0 chrX 110836549 110836840 -66137300 + AluSg SINE Alu 1 300 -10 396 167 0 0 chrX 110836840 110836912 -66137228 + GA-rich Low_complexity Low_complexity 1 72 0 325 348 117 37 chrX 110836914 110837239 -66136901 - L2 LINE L2 -357 2957 2607 679 296 210 18 chrX 110837250 110837760 -66136380 - L2 LINE L2 -980 2334 1727 575 170 116 36 chrX 110838243 110838355 -66135785 + FLAM_A SINE Alu 1 121 -12 834 144 64 0 chrX 110838384 110838509 -66135631 - FLAM_C SINE Alu 0 133 1 353 191 12 48 chrX 110838614 110838698 -66135442 - L2 LINE L2 -4 3309 3229 236 315 134 27 chrX 110838862 110839011 -66135129 - MIR3 SINE MIR -9 199 35 2291 101 3 0 chrX 110839920 110840218 -66133922 + AluSx SINE Alu 1 299 -13 22 35 0 0 chrX 110840218 110840247 -66133893 + AT_rich Low_complexity Low_complexity 1 29 0 594 318 9 19 chrX 110840561 110840772 -66133368 - MIR SINE MIR -2 260 52 638 286 53 16 chrX 110840897 110841086 -66133054 - MIR SINE MIR -8 254 59 2965 136 2 12 chrX 110841161 110841588 -66132552 + MER61B LTR ERV1 3 425 0 414 324 133 9 chrX 110842130 110842340 -66131800 - MIR SINE MIR -6 256 21 232 236 101 11 chrX 110843060 110843149 -66130991 - LTR16B LTR ERVL -127 337 241 301 286 0 0 chrX 110843265 110843342 -66130798 - LTR16B LTR ERVL -381 83 7 582 263 152 48 chrX 110843355 110843644 -66130496 + L2 LINE L2 2995 3313 0 219 69 0 0 chrX 110843894 110843923 -66130217 + (GAAA)n Simple_repeat Simple_repeat 3 31 0 212 250 76 22 chrX 110844122 110844214 -66129926 + MIR SINE MIR 102 198 -64 215 150 25 0 chrX 110844283 110844323 -66129817 + A-rich Low_complexity Low_complexity 1 41 0 219 226 75 0 chrX 110844480 110844533 -66129607 - MIR3 SINE MIR -1 207 151 264 251 145 34 chrX 110844849 110844970 -66129170 + MIR SINE MIR 13 147 -61 197 235 0 20 chrX 110845732 110845783 -66128357 + L2 LINE L2 3264 3313 0 1772 117 8 0 chrX 110845852 110846099 -66128041 + AluSq SINE Alu 1 249 -64 327 104 0 0 chrX 110846099 110846147 -66127993 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 279 214 204 10 chrX 110846351 110846449 -66127691 - MIR3 SINE MIR -6 202 86 392 280 68 0 chrX 110846915 110847033 -66127107 + L1MC5 LINE L1 5643 5768 -2040 4851 83 87 9 chrX 110847033 110847316 -66126824 + L1PA16 LINE L1 5435 5694 -472 4851 117 29 7 chrX 110847316 110848032 -66126108 + L1PA16 LINE L1 5435 6166 0 4851 83 87 9 chrX 110848032 110848113 -66126027 + L1PA16 LINE L1 5694 6166 0 524 143 0 0 chrX 110848113 110848197 -66125943 - AluS SINE Alu -4 307 224 2085 125 27 0 chrX 110848197 110848493 -66125647 + L1PB4 LINE L1 5852 6155 -1 1768 227 47 115 chrX 110848511 110848689 -66125451 + L1MC5 LINE L1 5759 5947 -2033 416 50 0 17 chrX 110848689 110848749 -66125391 + (CA)n Simple_repeat Simple_repeat 2 60 0 1768 227 47 115 chrX 110848749 110849144 -66124996 + L1MC5 LINE L1 5947 6367 -1613 1702 163 3 11 chrX 110849144 110849451 -66124689 - AluJb SINE Alu 0 307 3 1768 227 47 115 chrX 110849451 110850153 -66123987 + L1MC5 LINE L1 6367 6967 -1013 1958 136 17 17 chrX 110850153 110850454 -66123686 + AluJo SINE Alu 1 301 -11 1768 227 47 115 chrX 110850454 110850722 -66123418 + L1MC5 LINE L1 6967 7252 -728 292 346 0 12 chrX 110850726 110850888 -66123252 + L1MC4a LINE L1 7247 7406 -402 432 251 38 48 chrX 110851912 110852128 -66122012 - L1ME3A LINE L1 0 6170 5961 458 195 39 47 chrX 110852224 110852352 -66121788 - L1MC5 LINE L1 -431 7530 7404 2230 117 7 0 chrX 110852888 110853257 -66120883 + AluSx SINE Alu 1 371 0 417 264 130 50 chrX 110854734 110855235 -66118905 + L1M4 LINE L1 2638 3178 -2968 1549 186 3 17 chrX 110855236 110855526 -66118614 + AluJb SINE Alu 1 286 -26 198 0 0 0 chrX 110855849 110855871 -66118269 + (CA)n Simple_repeat Simple_repeat 2 23 0 21 82 0 0 chrX 110855871 110855920 -66118220 + AT_rich Low_complexity Low_complexity 1 49 0 452 100 0 17 chrX 110856042 110856102 -66118038 + Alu SINE Alu 4 62 -256 372 128 28 50 chrX 111056141 111056320 -65917820 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 608 104 35 38 chrX 111056337 111056631 -65917509 + (TATAA)n Simple_repeat Simple_repeat 1 292 0 272 121 69 17 chrX 111056636 111056694 -65917446 - MADE1 DNA Mariner -12 68 8 31 0 0 0 chrX 111056861 111056892 -65917248 + AT_rich Low_complexity Low_complexity 1 31 0 511 88 74 0 chrX 111056901 111057049 -65917091 + (TA)n Simple_repeat Simple_repeat 2 160 0 908 176 162 4 chrX 111057599 111057871 -65916269 + MER33 DNA MER1_type 10 324 0 573 194 61 49 chrX 111057874 111057906 -65916234 + MIR SINE MIR 13 43 -219 2194 96 14 0 chrX 111057906 111058211 -65915929 - AluSx SINE Alu 0 309 1 573 194 61 49 chrX 111058211 111058359 -65915781 + MIR SINE MIR 43 197 -65 589 309 83 10 chrX 111058462 111058666 -65915474 + MIR SINE MIR 12 230 -32 326 191 16 0 chrX 111059181 111059244 -65914896 + MIR SINE MIR 185 248 -14 614 306 6 6 chrX 111059283 111059443 -65914697 - MIR SINE MIR -91 171 12 1822 147 3 31 chrX 111059557 111059850 -65914290 + AluJb SINE Alu 10 294 -18 446 302 43 0 chrX 111060580 111060696 -65913444 + L2 LINE L2 3152 3272 0 21 0 0 0 chrX 111061749 111061770 -65912370 + AT_rich Low_complexity Low_complexity 1 21 0 2257 104 0 19 chrX 111061792 111062110 -65912030 - AluSq SINE Alu -1 312 1 733 249 203 0 chrX 111062459 111062676 -65911464 + MIR SINE MIR 2 262 0 311 290 110 0 chrX 111062679 111062779 -65911361 - MIR SINE MIR -133 129 19 641 286 24 10 chrX 111062926 111063132 -65911008 - L2 LINE L2 -777 2537 2329 642 139 0 50 chrX 111063166 111063346 -65910794 + (TA)n Simple_repeat Simple_repeat 2 172 0 857 203 13 0 chrX 111063346 111063499 -65910641 + AluJb SINE Alu 130 284 -28 1593 259 54 14 chrX 111063515 111064094 -65910046 + L2 LINE L2 2702 3313 0 2526 69 0 0 chrX 111064231 111064583 -65909557 - AluY SINE Alu 0 352 1 2036 131 40 0 chrX 111064638 111064936 -65909204 - AluSx SINE Alu -2 310 1 1173 260 105 52 chrX 111064938 111065415 -65908725 + MLT1J LTR MaLR 9 510 -1 1975 129 14 4 chrX 111065538 111065818 -65908322 + AluSx SINE Alu 5 287 -25 2261 84 3 7 chrX 111065821 111066118 -65908022 + AluSg SINE Alu 1 296 -14 1492 130 29 32 chrX 111066215 111066492 -65907648 - MER50 LTR ERV1 -29 705 430 1343 97 16 69 chrX 111066484 111066594 -65907546 - MER50 LTR ERV1 -500 234 120 * 2162 123 0 17 chrX 111066594 111066895 -65907245 - AluSx SINE Alu -16 296 1 1343 97 16 69 chrX 111066895 111067031 -65907109 - MER50 LTR ERV1 -614 120 1 1172 115 15 168 chrX 111067179 111067518 -65906622 - L1MB8 LINE L1 -37 6141 5855 255 180 0 0 chrX 111067516 111067566 -65906574 + L1MB8 LINE L1 5778 5827 -357 * 4282 138 26 22 chrX 111067622 111067781 -65906359 - L1MB3 LINE L1 -3 6180 6023 1706 155 52 14 chrX 111067781 111068071 -65906069 + AluJb SINE Alu 1 301 -11 4282 138 26 22 chrX 111068071 111068682 -65905458 - L1MB3 LINE L1 -160 6023 5407 2478 61 0 26 chrX 111068767 111069078 -65905062 + AluY SINE Alu 1 303 -8 349 233 136 0 chrX 111069217 111069320 -65904820 - LTR16A LTR ERVL 0 450 334 281 213 16 0 chrX 111069324 111069385 -65904755 + Charlie1 DNA MER1_type 2700 2761 0 265 224 12 35 chrX 111069466 111069551 -65904589 + CT-rich Low_complexity Low_complexity 1 83 0 4354 105 166 140 chrX 111069664 111070909 -65903231 - pTR5 LTR ERV1 0 2438 1161 24 32 0 0 chrX 111071176 111071207 -65902933 + AT_rich Low_complexity Low_complexity 1 31 0 2297 93 7 0 chrX 111071341 111071630 -65902510 - AluSx SINE Alu -21 291 1 196 263 50 88 chrX 111072450 111072530 -65901610 + MIR3 SINE MIR 87 163 -45 328 195 39 0 chrX 111072534 111072611 -65901529 + MER116 DNA Mariner 1 80 0 490 267 68 92 chrX 111072624 111072875 -65901265 - MIR SINE MIR 0 262 18 334 294 51 45 chrX 111073406 111073555 -65900585 - MIR SINE MIR -62 146 30 480 231 176 31 chrX 111073764 111074123 -65900017 + HAL1 LINE L1 1969 2379 -128 938 207 68 11 chrX 111074124 111074580 -65899560 - MLT1E2 LTR MaLR -45 581 24 376 208 117 0 chrX 111074897 111074974 -65899166 - MIR3 SINE MIR -11 197 112 348 234 61 7 chrX 111075042 111075161 -65898979 - MIR3 SINE MIR -28 180 56 2342 85 7 0 chrX 111075305 111075610 -65898530 + AluSp SINE Alu 1 307 -6 591 343 74 5 chrX 111075759 111075975 -65898165 + MIR SINE MIR 26 256 -6 2217 90 36 3 chrX 111076899 111077200 -65896940 - AluY SINE Alu 0 311 1 261 0 0 0 chrX 111079465 111079494 -65894646 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2140 107 0 0 chrX 111079496 111079777 -65894363 - AluSx SINE Alu -31 281 1 197 265 0 108 chrX 111081037 111081078 -65893062 + MIR3 SINE MIR 120 149 -59 668 208 235 11 chrX 111081078 111081261 -65892879 + MER58A DNA MER1_type 1 224 0 197 265 0 108 chrX 111081261 111081302 -65892838 + MIR3 SINE MIR 149 193 -15 2873 221 35 7 chrX 111081454 111082145 -65891995 + L1ME1 LINE L1 5448 6157 -9 353 327 54 24 chrX 111082214 111082431 -65891709 + L1ME4a LINE L1 4889 5116 -1030 306 316 26 9 chrX 111082678 111082792 -65891348 + L1ME4a LINE L1 5445 5560 -2248 390 264 88 6 chrX 111082850 111083032 -65891108 - L1MC4a LINE L1 -1878 5930 5734 * 455 256 68 43 chrX 111083016 111083062 -65891078 + L1ME4a LINE L1 5539 5582 -539 1207 136 112 9 chrX 111083062 111083276 -65890864 - MER46A DNA MER2_type 0 236 1 455 256 68 43 chrX 111083276 111083510 -65890630 + L1ME4a LINE L1 5582 5826 -295 1234 226 88 0 chrX 111083521 111083826 -65890314 - MER58B DNA MER1_type -3 338 7 5522 140 30 44 chrX 111083922 111085008 -65889132 + MER11C LTR ERVK 1 1071 0 936 129 0 0 chrX 111085606 111085730 -65888410 + AluJb SINE Alu 1 124 -188 1897 103 4 11 chrX 111085736 111085998 -65888142 - AluSg SINE Alu -16 294 35 36 40 0 0 chrX 111086000 111086050 -65888090 + AT_rich Low_complexity Low_complexity 1 50 0 1929 177 96 3 chrX 111086712 111087097 -65887043 + MSTA LTR MaLR 8 428 0 343 303 101 39 chrX 111087636 111087844 -65886296 + L2 LINE L2 2409 2629 -685 381 274 79 12 chrX 111087868 111088032 -65886108 - L1ME4a LINE L1 -3 6118 5944 299 233 0 35 chrX 111088280 111088366 -65885774 - L1MC4a LINE L1 -521 5600 5518 884 277 19 23 chrX 111088532 111088792 -65885348 + MIR SINE MIR 2 260 -2 509 238 10 89 chrX 111088872 111089074 -65885066 + MER5A DNA MER1_type 1 186 -3 952 226 11 41 chrX 111089354 111089620 -65884520 - MIR SINE MIR -2 260 3 1647 151 13 3 chrX 111090198 111090496 -65883644 + L1MB4 LINE L1 5820 6120 -60 282 160 0 0 chrX 111090502 111090552 -65883588 + (TA)n Simple_repeat Simple_repeat 1 50 0 1645 152 6 99 chrX 111090552 111090874 -65883266 - AluJo SINE Alu -10 292 1 369 115 0 0 chrX 111090874 111090935 -65883205 + L1MB3 LINE L1 6113 6173 -10 189 0 0 0 chrX 111090961 111090982 -65883158 + (A)n Simple_repeat Simple_repeat 1 21 0 2793 257 127 15 chrX 111091429 111092490 -65881650 + L2 LINE L2 2022 3207 -106 198 103 0 0 chrX 111092490 111092519 -65881621 + (TG)n Simple_repeat Simple_repeat 2 30 0 2793 257 127 15 chrX 111092519 111092621 -65881519 + L2 LINE L2 3207 3296 -17 2282 92 23 3 chrX 111093075 111093381 -65880759 + AluSq SINE Alu 1 312 -1 2099 131 0 7 chrX 111094010 111094315 -65879825 - AluSx SINE Alu -9 303 1 2098 113 7 13 chrX 111095529 111095831 -65878309 - AluSx SINE Alu -12 300 1 369 302 7 36 chrX 111096003 111096142 -65877998 - MER5A DNA MER1_type -1 188 54 272 248 75 75 chrX 111096253 111096386 -65877754 + MIR3 SINE MIR 53 185 -23 320 283 92 122 chrX 111097002 111097690 -65876450 - L1M2 LINE L1 -5430 1419 753 388 291 123 54 chrX 111097987 111098190 -65875950 - MIR SINE MIR -19 243 27 801 207 92 64 chrX 111098298 111098582 -65875558 + MLT1F1 LTR MaLR 6 287 -267 1711 185 16 16 chrX 111098586 111098954 -65875186 - MLT1C LTR MaLR -27 440 73 1483 186 25 7 chrX 111099082 111099361 -65874779 - AluJb SINE Alu -28 284 1 183 333 39 26 chrX 111099361 111099439 -65874701 - L3 LINE CR1 -890 687 609 21 0 0 0 chrX 111099610 111099631 -65874509 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 111100094 111100116 -65874024 + AT_rich Low_complexity Low_complexity 1 22 0 1850 230 97 49 chrX 111100193 111101210 -65872930 + L1ME3 LINE L1 4864 5953 -209 1957 107 0 55 chrX 111101210 111101520 -65872620 + AluSx SINE Alu 1 293 -19 1850 230 97 49 chrX 111101520 111101739 -65872401 + L1ME3 LINE L1 5953 6160 -2 585 260 79 23 chrX 111102911 111103088 -65871052 + MIR SINE MIR 72 258 -4 709 265 98 26 chrX 111103119 111103353 -65870787 + MIR SINE MIR 12 262 0 1764 97 12 0 chrX 111103436 111103695 -65870445 - L1PA11 LINE L1 -21 6153 5892 935 293 151 20 chrX 111104631 111105088 -65869052 + L2 LINE L2 2793 3313 0 2111 151 42 3 chrX 111105542 111105873 -65868267 - MER2 DNA MER2_type 0 344 1 1974 145 40 0 chrX 111106250 111106574 -65867566 + L1MB2 LINE L1 5830 6166 -5 1792 117 19 0 chrX 111106583 111106840 -65867300 + AluJb SINE Alu 36 297 -15 227 272 110 44 chrX 111107264 111107400 -65866740 - MIR SINE MIR -41 221 77 2736 124 40 3 chrX 111107675 111108087 -65866053 + MSTC LTR MaLR 1 363 -1 2332 112 0 0 chrX 111108629 111108941 -65865199 + AluSx SINE Alu 1 312 0 2147 105 26 3 chrX 111109067 111109371 -65864769 - AluSx SINE Alu -1 311 1 326 285 26 46 chrX 111110437 111110588 -65863552 - MER5A DNA MER1_type -7 182 35 2348 106 3 0 chrX 111111372 111111683 -65862457 + AluSx SINE Alu 1 312 0 204 40 0 0 chrX 111111943 111111968 -65862172 + (TAA)n Simple_repeat Simple_repeat 3 27 0 2460 65 0 0 chrX 111111974 111112265 -65861875 - AluY SINE Alu -20 291 1 794 208 81 36 chrX 111112271 111112492 -65861648 - MIR SINE MIR 0 262 32 921 191 80 30 chrX 111112539 111112738 -65861402 + MER3 DNA MER1_type 1 209 0 1769 162 25 3 chrX 111112801 111113085 -65861055 + AluJb SINE Alu 1 290 -22 376 230 175 40 chrX 111113165 111113291 -65860849 + MER91A DNA MER1_type 18 160 -36 327 267 121 109 chrX 111113943 111114265 -65859875 - L2 LINE L2 -7 3265 2940 208 316 5 87 chrX 111114331 111114537 -65859603 - L2 LINE L2 -406 2908 2720 182 322 139 0 chrX 111115265 111115380 -65858760 + L2 LINE L2 3178 3308 -5 2207 131 0 0 chrX 111115566 111115871 -65858269 + AluSx SINE Alu 1 305 -7 3699 173 72 42 chrX 111115921 111116732 -65857408 + L1MD2 LINE L1 5523 6357 -2 1933 162 0 0 chrX 111117457 111117759 -65856381 + AluSx SINE Alu 1 302 -10 389 301 97 5 chrX 111118374 111118570 -65855570 + L2 LINE L2 2256 2469 -845 317 87 0 0 chrX 111118621 111118667 -65855473 + AluSc SINE Alu 254 299 0 * 1105 236 66 8 chrX 111118666 111118925 -65855215 - MER58B DNA MER1_type -39 302 29 923 126 0 30 chrX 111119013 111119148 -65854992 - FLAM_A SINE Alu -1 132 2 2025 94 12 60 chrX 111119221 111119540 -65854600 - AluSx SINE Alu -8 304 1 2253 108 0 3 chrX 111120265 111120562 -65853578 + AluSx SINE Alu 1 296 -16 800 142 0 28 chrX 111120634 111120775 -65853365 - AluJo SINE Alu -175 137 1 1856 146 30 10 chrX 111120857 111121159 -65852981 + AluJb SINE Alu 1 308 -4 457 288 50 7 chrX 111121272 111121411 -65852729 + L2 LINE L2 1308 1452 -1862 901 256 183 36 chrX 111121413 111121535 -65852605 + L2 LINE L2 2160 2263 -1051 2053 144 3 0 chrX 111121535 111121827 -65852313 + AluSx SINE Alu 1 293 -19 901 256 183 36 chrX 111121827 111122153 -65851987 + L2 LINE L2 2263 2674 -640 2077 76 47 18 chrX 111122355 111122632 -65851508 - AluY SINE Alu -26 285 1 2380 89 0 0 chrX 111122804 111123097 -65851043 - AluSg SINE Alu -17 293 1 334 307 120 56 chrX 111123624 111123789 -65850351 - L2 LINE L2 -262 3010 2857 2082 134 7 13 chrX 111123789 111124122 -65850018 + AluSx SINE Alu 1 312 0 334 307 120 56 chrX 111124122 111124339 -65849801 - L2 LINE L2 -415 2857 2608 357 98 98 0 chrX 111125134 111125195 -65848945 - L1PA16 LINE L1 -1 6165 6099 4981 158 35 40 chrX 111125635 111126467 -65847673 - L1MB8 LINE L1 -12 6166 5331 1741 161 32 0 chrX 111126467 111126746 -65847394 - AluJb SINE Alu -24 288 1 4981 158 35 40 chrX 111126746 111127407 -65846733 - L1MB8 LINE L1 -847 5331 4659 2074 119 3 3 chrX 111127407 111127716 -65846424 - AluSx SINE Alu 0 309 1 4981 158 35 40 chrX 111127716 111127763 -65846377 - L1MB8 LINE L1 -1519 4659 4613 1783 141 67 0 chrX 111127891 111128160 -65845980 - AluSx SINE Alu -25 287 1 327 64 85 11 chrX 111128394 111128488 -65845652 + (TA)n Simple_repeat Simple_repeat 2 102 0 297 0 0 0 chrX 111128503 111128536 -65845604 + (CA)n Simple_repeat Simple_repeat 2 34 0 1170 232 8 8 chrX 111128537 111128774 -65845366 - MIR SINE MIR -23 239 3 270 160 0 0 chrX 111129151 111129201 -65844939 + (TG)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chrX 111129206 111129234 -65844906 + AT_rich Low_complexity Low_complexity 1 28 0 341 193 88 61 chrX 111129261 111129375 -65844765 + L2 LINE L2 3197 3313 0 998 173 44 75 chrX 111129706 111129932 -65844208 + MER20 DNA MER1_type 1 219 0 1770 148 47 0 chrX 111130128 111130406 -65843734 + AluJb SINE Alu 2 292 -20 1516 146 0 43 chrX 111131831 111132084 -65842056 + AluSx SINE Alu 1 242 -70 777 251 32 72 chrX 111133052 111133160 -65840980 - MIR SINE MIR -9 253 142 1794 157 34 3 chrX 111133160 111133454 -65840686 - AluSx SINE Alu -9 303 1 777 251 32 72 chrX 111133454 111133596 -65840544 - MIR SINE MIR -120 142 13 1506 155 31 81 chrX 111133708 111134030 -65840110 + AluJb SINE Alu 1 306 -6 605 133 12 2 chrX 111134307 111134411 -65839729 + L1MD3 LINE L1 6247 6344 0 4434 152 8 21 chrX 111134736 111134876 -65839264 + L1PA16 LINE L1 5465 5605 -561 2133 137 0 0 chrX 111134876 111135182 -65838958 + AluSx SINE Alu 1 306 -6 4434 152 8 21 chrX 111135182 111135752 -65838388 + L1PA16 LINE L1 5605 6166 0 7207 168 47 36 chrX 111136476 111137040 -65837100 + L1MB3 LINE L1 22 578 -5804 1540 173 10 67 chrX 111137040 111137370 -65836770 + AluJo SINE Alu 1 313 0 7207 168 47 36 chrX 111137370 111137615 -65836525 + L1MB3 LINE L1 578 819 -5563 189 0 0 0 chrX 111137615 111137636 -65836504 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 7207 168 47 36 chrX 111137636 111138125 -65836015 + L1MB3 LINE L1 819 1301 -5081 2012 137 31 0 chrX 111138125 111138418 -65835722 + AluSx SINE Alu 1 302 -10 7207 168 47 36 chrX 111138418 111139703 -65834437 + L1MB3 LINE L1 1301 4457 -1925 3855 183 39 5 chrX 111139700 111141067 -65833073 + L1MB3 LINE L1 4739 6147 -272 * 1481 249 21 48 chrX 111141056 111141409 -65832731 + L1HS LINE L1 5651 5980 -186 * 2388 77 0 0 chrX 111141409 111141696 -65832444 + AluSx SINE Alu 1 287 -25 1481 249 21 48 chrX 111141696 111141863 -65832277 + L1HS LINE L1 5980 6150 -16 2324 108 3 0 chrX 111141877 111142182 -65831958 + AluSx SINE Alu 1 306 -6 648 272 109 20 chrX 111142449 111142651 -65831489 + MIR SINE MIR 22 241 -21 208 89 22 22 chrX 111142911 111142956 -65831184 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 325 269 104 71 chrX 111143208 111143315 -65830825 - L1M2 LINE L1 -748 5398 5296 2081 130 17 3 chrX 111143315 111143614 -65830526 - AluSx SINE Alu -9 303 1 325 269 104 71 chrX 111143614 111143744 -65830396 - L1M2 LINE L1 -850 5296 5172 2139 125 10 0 chrX 111143744 111144040 -65830100 - AluSx SINE Alu -13 299 1 325 269 104 71 chrX 111144040 111144269 -65829871 - L1M2 LINE L1 -974 5172 4943 2245 117 0 3 chrX 111144269 111144568 -65829572 + AluSx SINE Alu 1 298 -14 325 269 104 71 chrX 111144568 111144608 -65829532 - L1M2 LINE L1 -1203 4943 4906 2232 103 3 0 chrX 111144809 111145100 -65829040 + AluSx SINE Alu 12 303 -9 1494 217 10 0 chrX 111145273 111145563 -65828577 + AluJo SINE Alu 1 293 -19 486 277 145 41 chrX 111145696 111146090 -65828050 + HAL1b LINE L1 301 735 -613 302 229 66 41 chrX 111146369 111146491 -65827649 + HAL1b LINE L1 1223 1347 -1 564 116 0 0 chrX 111146491 111146577 -65827563 + (TA)n Simple_repeat Simple_repeat 2 87 0 2298 102 0 3 chrX 111146577 111146872 -65827268 - AluSg SINE Alu -16 294 1 210 246 246 14 chrX 111147942 111148011 -65826129 - MER5B DNA MER1_type 0 178 94 2399 73 0 16 chrX 111148697 111149010 -65825130 + AluSc SINE Alu 1 308 -1 761 164 5 87 chrX 111151007 111151215 -65822925 + AluJb SINE Alu 118 308 -4 361 242 21 113 chrX 111151276 111151430 -65822710 + L1MC5 LINE L1 7001 7127 -834 2024 155 0 7 chrX 111151430 111151734 -65822406 + AluJo SINE Alu 1 302 -10 361 242 21 113 chrX 111151734 111151819 -65822321 + L1MC5 LINE L1 7127 7218 -743 336 246 24 24 chrX 111152027 111152153 -65821987 + L1MC5 LINE L1 7604 7729 -232 2290 107 3 0 chrX 111152153 111152453 -65821687 + AluSx SINE Alu 1 301 -11 242 254 0 0 chrX 111153324 111153383 -65820757 - L2 LINE L2 -2 3311 3253 206 264 128 68 chrX 111153462 111153610 -65820530 + L2 LINE L2 3155 3311 -2 183 0 135 0 chrX 111155607 111155644 -65818496 + T-rich Low_complexity Low_complexity 4 45 0 1009 198 166 82 chrX 111155768 111155845 -65818295 - L1ME4a LINE L1 -6 6115 6046 2427 97 0 0 chrX 111155845 111156153 -65817987 + AluSx SINE Alu 1 308 -4 1009 198 166 82 chrX 111156153 111156316 -65817824 - L1ME4a LINE L1 -75 6046 5898 1690 195 7 3 chrX 111156316 111156614 -65817526 - AluJo SINE Alu -13 299 1 1009 198 166 82 chrX 111156614 111156836 -65817304 - L1ME4a LINE L1 -223 5898 5613 808 180 7 0 chrX 111156844 111156983 -65817157 + AluJo SINE Alu 1 140 -172 1725 133 0 71 chrX 111156983 111157291 -65816849 + AluJo SINE Alu 5 290 -22 2257 119 0 0 chrX 111157299 111157610 -65816530 + AluSx SINE Alu 1 311 -1 775 277 92 14 chrX 111157619 111157901 -65816239 - L1MC4a LINE L1 -1941 5867 5564 21 0 0 0 chrX 111157946 111157967 -65816173 + AT_rich Low_complexity Low_complexity 1 21 0 975 204 22 35 chrX 111158978 111159209 -65814931 - MIR SINE MIR -15 247 20 22 56 0 0 chrX 111159562 111159598 -65814542 + AT_rich Low_complexity Low_complexity 1 36 0 1704 89 13 25 chrX 111160361 111160596 -65813544 - L1PA8A LINE L1 -12 6119 5888 4468 171 31 30 chrX 111160920 111161626 -65812514 + L1MB5 LINE L1 5174 5877 -297 2080 124 17 7 chrX 111161626 111161916 -65812224 + AluSx SINE Alu 1 293 -19 4468 171 31 30 chrX 111161916 111161964 -65812176 + L1MB5 LINE L1 5877 5923 -251 1350 155 78 0 chrX 111161964 111162183 -65811957 - MER46A DNA MER2_type 0 236 1 4468 171 31 30 chrX 111162183 111162418 -65811722 + L1MB5 LINE L1 5923 6165 -9 861 201 6 6 chrX 111162584 111162748 -65811392 - FRAM SINE Alu -14 162 1 2391 69 0 28 chrX 111163337 111163657 -65810483 + AluY SINE Alu 1 311 0 2175 110 3 0 chrX 111164093 111164383 -65809757 + AluSx SINE Alu 1 291 -21 928 129 0 65 chrX 111164536 111164706 -65809434 - L1MA6 LINE L1 -2 6298 6140 28 61 0 0 chrX 111165209 111165258 -65808882 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chrX 111165410 111165439 -65808701 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 111165521 111165551 -65808589 + AT_rich Low_complexity Low_complexity 1 30 0 1955 186 90 16 chrX 111165954 111166378 -65807762 + MLT1C LTR MaLR 1 455 -12 2058 184 25 8 chrX 111166378 111166737 -65807403 + MLT1A1 LTR MaLR 1 365 0 588 370 96 20 chrX 111166754 111167291 -65806849 + L2 LINE L2 2471 3050 -222 182 364 100 21 chrX 111167389 111167529 -65806611 + L2 LINE L2 3121 3271 -1 3751 209 122 32 chrX 111167619 111168880 -65805260 + L1ME2 LINE L1 3798 5171 -975 3037 221 88 22 chrX 111169016 111169984 -65804156 + L1ME2 LINE L1 5130 6150 -14 1917 140 3 3 chrX 111169991 111170284 -65803856 - AluSx SINE Alu -19 293 1 21 36 0 0 chrX 111170285 111170313 -65803827 + AT_rich Low_complexity Low_complexity 1 28 0 258 132 0 0 chrX 111170322 111170360 -65803780 + MER4B LTR ERV1 499 536 -74 242 374 44 0 chrX 111170896 111170987 -65803153 - MIR SINE MIR -82 126 32 229 304 219 61 chrX 111171394 111171595 -65802545 + L2 LINE L2 2073 2241 -1073 2118 120 38 0 chrX 111171595 111171887 -65802253 - AluSx SINE Alu -9 303 1 229 304 219 61 chrX 111171887 111172211 -65801929 + L2 LINE L2 2241 2681 -633 2388 84 10 0 chrX 111172288 111172586 -65801554 + AluSc SINE Alu 1 301 -8 504 229 175 30 chrX 111174136 111174302 -65799838 + MIR SINE MIR 60 249 -13 1915 163 0 3 chrX 111175034 111175335 -65798805 - AluJo SINE Alu -12 300 1 2289 74 7 19 chrX 111175680 111175989 -65798151 + AluY SINE Alu 1 305 -6 287 244 0 51 chrX 111176234 111176312 -65797828 - MER5C DNA MER1_type -248 76 3 21 0 0 0 chrX 111177707 111177728 -65796412 + AT_rich Low_complexity Low_complexity 1 21 0 1735 102 75 0 chrX 111178484 111178739 -65795401 - L1PB2 LINE L1 -12 6139 5866 715 52 0 42 chrX 111178941 111179037 -65795103 + L1PA8 LINE L1 6072 6163 -9 1605 124 128 0 chrX 111179518 111179768 -65794372 - AluSq SINE Alu -31 282 1 1417 170 116 4 chrX 111180143 111180442 -65793698 - AluJb SINE Alu 0 328 1 821 146 0 53 chrX 111181114 111181265 -65792875 - FLAM_C SINE Alu 0 143 1 479 265 54 108 chrX 111182364 111182698 -65791442 + Charlie8 DNA MER1_type 4 1404 -1013 242 314 29 91 chrX 111182770 111182945 -65791195 + L2 LINE L2 3019 3182 -90 2397 95 10 0 chrX 111183387 111183693 -65790447 - AluSx SINE Alu -3 309 1 1140 251 174 16 chrX 111183755 111184224 -65789916 + L2 LINE L2 2772 3313 0 225 0 0 0 chrX 111184495 111184520 -65789620 + (GA)n Simple_repeat Simple_repeat 1 25 0 1432 159 22 47 chrX 111185261 111185538 -65788602 + AluJb SINE Alu 35 304 -8 1133 298 47 41 chrX 111186077 111186704 -65787436 - L1MEc LINE L1 -3376 2839 2251 857 136 0 50 chrX 111186704 111186844 -65787296 - FLAM_C SINE Alu 0 133 1 1133 298 47 41 chrX 111186844 111186964 -65787176 - L1MEc LINE L1 -3964 2251 2133 444 191 27 75 chrX 111186994 111187141 -65786999 + MIR SINE MIR 123 262 0 2464 67 7 0 chrX 111187632 111187931 -65786209 + AluSq SINE Alu 1 301 -12 1121 194 0 39 chrX 111188706 111188989 -65785151 + pTR5 LTR ERV1 738 1009 -1429 2373 192 31 49 chrX 111189147 111189360 -65784780 - L1M4 LINE L1 -1573 4573 4358 2271 91 0 19 chrX 111189360 111189692 -65784448 - AluSx SINE Alu 0 312 1 2373 192 31 49 chrX 111189692 111190087 -65784053 - L1M4 LINE L1 -1788 4358 3976 252 279 0 15 chrX 111190364 111190432 -65783708 + L2 LINE L2 3157 3223 -49 1985 92 7 75 chrX 111190591 111190897 -65783243 + AluSx SINE Alu 1 285 -27 225 224 0 0 chrX 111191548 111191597 -65782543 - L2 LINE L2 0 3313 3265 1789 161 3 3 chrX 111192083 111192374 -65781766 + AluJb SINE Alu 1 291 -21 590 156 73 0 chrX 111192510 111192619 -65781521 - L1MA4A LINE L1 -17 6286 6170 505 118 97 0 chrX 111192622 111192715 -65781425 - L1MA4A LINE L1 -196 6107 6006 873 269 22 9 chrX 111193111 111193334 -65780806 + MIR SINE MIR 1 226 -36 818 153 25 49 chrX 111193335 111193498 -65780642 + FRAM SINE Alu 2 160 -16 204 40 0 0 chrX 111193886 111193911 -65780229 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 2593 77 0 0 chrX 111193916 111194228 -65779912 - AluSx SINE Alu 0 312 1 1360 179 5 5 chrX 111195392 111195610 -65778530 + MER20 DNA MER1_type 2 219 0 300 218 136 54 chrX 111196108 111196210 -65777930 + L1M4 LINE L1 4494 4614 -1532 2165 87 18 0 chrX 111196210 111196535 -65777605 - AluSg SINE Alu 0 330 1 300 218 136 54 chrX 111196535 111196578 -65777562 + L1M4 LINE L1 4614 4652 -1494 721 172 0 23 chrX 111196583 111196711 -65777429 + FLAM_A SINE Alu 18 142 0 1337 122 45 27 chrX 111196949 111197171 -65776969 + AluSp SINE Alu 2 227 -86 2116 20 4 12 chrX 111197273 111197518 -65776622 + L1PA5 LINE L1 5901 6143 -11 2063 146 67 15 chrX 111197518 111197906 -65776234 + L1MB3 LINE L1 5774 6183 0 1260 182 74 12 chrX 111198056 111198298 -65775842 + MIR SINE MIR 2 258 -4 2349 100 0 0 chrX 111198339 111198639 -65775501 - AluSx SINE Alu -12 300 1 255 308 113 13 chrX 111199355 111199514 -65774626 + L2 LINE L2 2864 3038 -234 1897 142 31 0 chrX 111199623 111199911 -65774229 - AluSx SINE Alu -15 297 1 950 267 28 12 chrX 111200041 111200292 -65773848 + MIR SINE MIR 8 262 0 568 253 20 40 chrX 111200375 111200525 -65773615 - MIR3 SINE MIR -21 187 41 243 328 0 0 chrX 111200753 111200817 -65773323 + MIR SINE MIR 73 136 -72 421 211 233 43 chrX 111200962 111201194 -65772946 + L2 LINE L2 2998 3273 -40 367 195 23 0 chrX 111201455 111201542 -65772598 + L1MD3 LINE L1 7901 7989 -6 187 211 14 56 chrX 111202490 111202561 -65771579 + MIR3 SINE MIR 3 70 -138 2002 159 128 18 chrX 111202881 111203320 -65770820 - MLT1D LTR MaLR -7 498 12 806 143 8 30 chrX 111203791 111203924 -65770216 + FLAM_A SINE Alu 2 131 -2 925 207 29 10 chrX 111205159 111205367 -65768773 + MER20 DNA MER1_type 1 212 -7 390 311 83 57 chrX 111206221 111206607 -65767533 + L2 LINE L2 1840 2235 -1079 * 748 310 25 67 chrX 111206602 111206791 -65767349 + L2 LINE L2 2853 3048 -265 2110 80 7 31 chrX 111206791 111207079 -65767061 - AluSg SINE Alu -7 303 23 748 310 25 67 chrX 111207079 111207195 -65766945 + L2 LINE L2 3048 3167 -146 1872 77 119 8 chrX 111207195 111207456 -65766684 - AluSg1 SINE Alu -19 290 1 748 310 25 67 chrX 111207456 111207629 -65766511 + L2 LINE L2 3167 3312 -1 353 334 78 51 chrX 111207809 111208141 -65765999 + L2 LINE L2 2507 2847 -467 249 304 43 0 chrX 111208830 111208899 -65765241 - L2 LINE L2 0 3272 3201 664 219 107 32 chrX 111210195 111210382 -65763758 + MIR SINE MIR 4 204 -58 529 177 165 37 chrX 111210390 111210554 -65763586 - L1MB7 LINE L1 -13 6167 5981 336 206 0 14 chrX 111210562 111210635 -65763505 + MIR SINE MIR 186 257 -5 387 301 137 14 chrX 111211311 111211457 -65762683 - MIR3 SINE MIR -7 201 38 2194 95 14 3 chrX 111211779 111212064 -65762076 + AluSg SINE Alu 1 288 -22 579 108 49 0 chrX 111213135 111213237 -65760903 - L1MA4A LINE L1 -25 6278 6172 1920 145 3 14 chrX 111215093 111215390 -65758750 - AluJb SINE Alu -18 294 1 516 178 9 126 chrX 111215490 111215704 -65758436 - L1MC5 LINE L1 -49 7912 7724 241 256 57 85 chrX 111216553 111216729 -65757411 - L1MC5 LINE L1 -68 7893 7723 2331 104 3 0 chrX 111216977 111217285 -65756855 + AluSx SINE Alu 3 311 -1 207 0 0 0 chrX 111217463 111217486 -65756654 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2210 73 17 20 chrX 111217838 111218138 -65756002 + AluSx SINE Alu 1 299 -13 2291 72 3 3 chrX 111220609 111220900 -65753240 + AluY SINE Alu 1 291 -20 347 250 61 28 chrX 111221210 111221390 -65752750 - L1MB7 LINE L1 0 6184 5999 28 61 0 0 chrX 111221558 111221607 -65752533 + AT_rich Low_complexity Low_complexity 1 49 0 1827 154 3 24 chrX 111222909 111223201 -65750939 + AluJo SINE Alu 3 288 -24 320 325 61 0 chrX 111223472 111223586 -65750554 + MIR SINE MIR 19 139 -69 723 173 92 17 chrX 111223686 111223859 -65750281 + MER5A DNA MER1_type 1 186 -3 251 300 200 0 chrX 111223884 111224024 -65750116 + MIR3 SINE MIR 40 207 -1 191 280 20 0 chrX 111224964 111225014 -65749126 - MIR SINE MIR -66 142 92 1911 164 7 0 chrX 111225615 111225914 -65748226 - AluJb SINE Alu -11 301 1 472 293 161 52 chrX 111226192 111226490 -65747650 + L3 LINE CR1 844 1209 -368 2294 105 0 16 chrX 111226490 111226795 -65747345 + AluSx SINE Alu 1 300 -12 472 293 161 52 chrX 111226795 111226943 -65747197 + L3 LINE CR1 1209 1339 -238 183 222 22 22 chrX 111227016 111227061 -65747079 + L3b LINE CR1 1532 1576 -7 480 233 201 31 chrX 111227305 111227405 -65746735 + MER5A DNA MER1_type 4 86 -103 2237 91 3 7 chrX 111227405 111227701 -65746439 + AluSx SINE Alu 1 295 -17 480 233 201 31 chrX 111227701 111227759 -65746381 + MER5A DNA MER1_type 86 189 0 2061 151 0 3 chrX 111227801 111228106 -65746034 + AluJo SINE Alu 1 304 -8 549 246 87 0 chrX 111228619 111228745 -65745395 + L2 LINE L2 3136 3272 0 297 200 122 0 chrX 111229134 111229224 -65744916 - L1ME LINE L1 -717 5447 5347 187 244 0 22 chrX 111229282 111229327 -65744813 - MER5A DNA MER1_type -64 125 82 196 250 0 0 chrX 111229327 111229367 -65744773 + MER5A DNA MER1_type 149 188 -1 664 263 208 33 chrX 111229368 111229630 -65744510 - L3 LINE CR1 -44 1533 1188 2119 128 0 7 chrX 111229630 111229927 -65744213 - AluSx SINE Alu -17 295 1 664 263 208 33 chrX 111229927 111230029 -65744111 - L3 LINE CR1 -389 1188 1105 616 262 220 0 chrX 111230047 111230261 -65743879 + MIR SINE MIR 2 262 0 415 199 159 60 chrX 111230419 111230570 -65743570 + L1MC4a LINE L1 5734 5899 -1909 2098 120 0 3 chrX 111230928 111231219 -65742921 + AluSg SINE Alu 1 290 -20 2327 104 0 3 chrX 111232745 111233052 -65741088 + AluSc SINE Alu 1 306 -3 2233 108 0 23 chrX 111233362 111233669 -65740471 - AluSx SINE Alu -12 300 1 2138 123 0 3 chrX 111233852 111234145 -65739995 + AluSx SINE Alu 1 292 -20 21 0 0 0 chrX 111234762 111234783 -65739357 + AT_rich Low_complexity Low_complexity 1 21 0 2029 139 3 10 chrX 111235108 111235410 -65738730 - AluSx SINE Alu -10 302 3 2352 81 0 7 chrX 111235506 111235801 -65738339 - AluSg SINE Alu -17 293 1 262 0 53 0 chrX 111236448 111236486 -65737654 + (CAAAAA)n Simple_repeat Simple_repeat 6 45 0 1172 227 109 83 chrX 111237538 111238079 -65736061 + MER68 LTR ERV1 1 555 -7 198 143 0 0 chrX 111238589 111238624 -65735516 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 374 97 12 chrX 111238865 111239122 -65735018 + L2 LINE L2 2566 2844 -470 635 195 133 0 chrX 111239190 111239318 -65734822 - FRAM SINE Alu -31 145 1 245 303 11 22 chrX 111239675 111239764 -65734376 + L2 LINE L2 2562 2649 -665 * 250 295 82 94 chrX 111239747 111239991 -65734149 - L2 LINE L2 0 3272 3032 1677 129 38 15 chrX 111241009 111241272 -65732868 + AluSx SINE Alu 44 312 0 726 108 16 39 chrX 111241746 111241875 -65732265 + L1M1 LINE L1 5457 5582 -723 2308 104 0 0 chrX 111241955 111242254 -65731886 - AluSx SINE Alu -13 299 1 1079 131 17 0 chrX 111242311 111242486 -65731654 + L1M1 LINE L1 5581 5758 -546 504 277 60 0 chrX 111243962 111244128 -65730012 - MER97a DNA MER1_type? -717 177 2 433 254 5 18 chrX 111244261 111244451 -65729689 - MIR SINE MIR 0 262 19 2051 60 45 4 chrX 111245327 111245592 -65728548 + AluY SINE Alu 27 302 -9 2341 103 0 3 chrX 111245596 111245906 -65728234 + AluSg SINE Alu 1 309 -1 424 23 0 92 chrX 111245906 111245993 -65728147 + (GGAAA)n Simple_repeat Simple_repeat 1 79 0 815 254 22 0 chrX 111246087 111246272 -65727868 - MER5A DNA MER1_type 0 189 1 741 181 25 64 chrX 111246562 111246645 -65727495 - MER3 DNA MER1_type -5 204 119 2071 78 74 0 chrX 111246645 111246929 -65727211 + AluSq SINE Alu 2 306 -7 741 181 25 64 chrX 111246929 111247049 -65727091 - MER3 DNA MER1_type -90 119 9 2273 198 48 4 chrX 111247065 111247622 -65726518 + L1 LINE L1 2472 3053 -3093 252 0 0 0 chrX 111248461 111248489 -65725651 + (A)n Simple_repeat Simple_repeat 1 28 0 193 310 90 40 chrX 111248492 111248592 -65725548 - L2 LINE L2 -12 3260 3156 1101 152 57 19 chrX 111248817 111249028 -65725112 + MER20 DNA MER1_type 1 219 0 435 312 213 44 chrX 111249553 111249655 -65724485 + L2 LINE L2 2638 2721 -592 207 0 0 0 chrX 111249655 111249678 -65724462 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 435 312 213 44 chrX 111249678 111250147 -65723993 + L2 LINE L2 2721 3313 0 2313 105 0 0 chrX 111250169 111250463 -65723677 + AluSx SINE Alu 1 294 -18 283 358 29 29 chrX 111250603 111250740 -65723400 + L2 LINE L2 3132 3268 -4 387 244 146 8 chrX 111250773 111250896 -65723244 + MIR3 SINE MIR 2 141 -67 2247 92 0 38 chrX 111250920 111251237 -65722903 + AluSx SINE Alu 1 305 -7 2117 132 10 3 chrX 111251565 111251868 -65722272 - AluJb SINE Alu -7 305 1 1425 253 107 15 chrX 111251907 111252547 -65721593 + L2 LINE L2 2620 3311 -2 678 268 94 18 chrX 111252540 111252572 -65721568 - MIR SINE MIR -19 243 215 * 1960 115 42 48 chrX 111252572 111252884 -65721256 - AluSx SINE Alu -2 310 1 678 268 94 18 chrX 111252884 111253075 -65721065 - MIR SINE MIR -47 215 3 572 246 16 60 chrX 111254359 111254542 -65719598 + MIR SINE MIR 23 197 -65 1049 142 6 19 chrX 111254600 111254762 -65719378 - FRAM SINE Alu -15 161 2 515 204 238 35 chrX 111255145 111255376 -65718764 - MER5C DNA MER1_type -46 278 1 1130 184 8 12 chrX 111256909 111257154 -65716986 - L1MB7 LINE L1 -1 6183 5940 672 324 117 56 chrX 111257531 111258440 -65715700 + L2 LINE L2 2268 3245 -27 1211 150 53 13 chrX 111258440 111258667 -65715473 - MER46A DNA MER2_type 0 236 1 672 324 117 56 chrX 111258667 111258697 -65715443 + L2 LINE L2 3245 3272 0 2706 77 11 3 chrX 111259208 111259560 -65714580 + THE1A LTR MaLR 1 355 0 6861 33 0 0 chrX 111260564 111261378 -65712762 + L1PA4 LINE L1 5342 6155 0 449 272 71 35 chrX 111262304 111262473 -65711667 - MIR3 SINE MIR -6 202 28 334 287 40 0 chrX 111263628 111263729 -65710411 + L3b LINE CR1 1226 1330 -253 388 284 99 0 chrX 111265578 111265740 -65708400 - L1ME4a LINE L1 -4 6117 5940 488 291 63 4 chrX 111265742 111265996 -65708144 - L1ME4a LINE L1 -204 5917 5649 496 263 103 104 chrX 111266023 111266401 -65707739 + L2 LINE L2 2698 3066 -247 2043 133 46 25 chrX 111266413 111266780 -65707360 + THE1C LTR MaLR 1 375 0 268 255 113 14 chrX 111267043 111267184 -65706956 - L1ME4a LINE L1 -658 5463 5309 956 161 65 138 chrX 111267406 111267803 -65706337 + MLT1C LTR MaLR 21 465 -2 21 0 0 0 chrX 111268294 111268315 -65705825 + AT_rich Low_complexity Low_complexity 1 21 0 1923 223 54 43 chrX 111268346 111268956 -65705184 + L1ME2 LINE L1 5539 6155 -9 2034 154 30 0 chrX 111269008 111269340 -65704800 - MER2 DNA MER2_type -1 343 2 6208 59 2 1 chrX 111269583 111270396 -65703744 - L1PA7 LINE L1 -15 6139 5326 526 235 137 81 chrX 111270634 111270868 -65703272 + MIR SINE MIR 1 247 -15 2192 103 7 0 chrX 111270869 111271160 -65702980 - AluSg SINE Alu -17 293 1 2548 57 0 10 chrX 111271174 111271488 -65702652 - AluY SINE Alu 0 311 1 2454 73 0 0 chrX 111272393 111272693 -65701447 + AluSq SINE Alu 1 300 -13 283 302 94 42 chrX 111273610 111273706 -65700434 + MIR3 SINE MIR 69 169 -39 195 167 148 37 chrX 111274008 111274062 -65700078 + L3 LINE CR1 1516 1575 -2 186 295 33 0 chrX 111275328 111275389 -65698751 - MIR SINE MIR -127 135 73 415 286 149 13 chrX 111275495 111275649 -65698491 + MIR SINE MIR 38 212 -50 428 302 135 34 chrX 111275799 111276024 -65698116 - MIR SINE MIR -18 244 11 632 103 0 0 chrX 111276081 111276168 -65697972 + AluJ/FLAM SINE Alu 2 88 -224 312 266 29 65 chrX 111276362 111276501 -65697639 - MIR SINE MIR -22 240 107 501 301 112 5 chrX 111276893 111277089 -65697051 + MIR SINE MIR 40 256 -6 410 287 7 7 chrX 111277494 111277637 -65696503 + L1ME4a LINE L1 5610 5752 -369 345 246 138 26 chrX 111277707 111277939 -65696201 + L1ME4a LINE L1 5864 6121 0 2268 81 0 17 chrX 111278430 111278726 -65695414 - AluSx SINE Alu -21 291 1 687 67 0 0 chrX 111280398 111280487 -65693653 - L1PA15 LINE L1 -13 6152 6064 958 249 37 35 chrX 111280913 111281342 -65692798 + L2 LINE L2 2771 3232 -81 1650 150 8 4 chrX 111281403 111281657 -65692483 + AluJo SINE Alu 44 298 -14 24 0 0 0 chrX 111283331 111283355 -65690785 + AT_rich Low_complexity Low_complexity 1 24 0 707 96 19 0 chrX 111283494 111283598 -65690542 + HY1 scRNA scRNA 1 106 -6 304 115 0 33 chrX 111283603 111283618 -65690522 + (GAAA)n Simple_repeat Simple_repeat 2 16 -44 2404 85 20 0 chrX 111283618 111283923 -65690217 + AluSp SINE Alu 1 311 -2 304 115 0 33 chrX 111283923 111283968 -65690172 + (GAAA)n Simple_repeat Simple_repeat 16 60 0 495 0 0 0 chrX 111284584 111284639 -65689501 + (TA)n Simple_repeat Simple_repeat 2 56 0 2251 120 0 0 chrX 111285277 111285577 -65688563 + AluSx SINE Alu 1 300 -12 1351 138 0 4 chrX 111287532 111287764 -65686376 + L1MA4 LINE L1 6070 6300 0 1704 167 0 29 chrX 111287773 111288085 -65686055 + AluJb SINE Alu 5 307 -5 525 210 115 51 chrX 111288087 111288343 -65685797 + AluJo/FRAM SINE Alu 138 403 0 833 130 0 0 chrX 111288787 111288902 -65685238 + AluSx SINE Alu 3 117 -196 1072 136 45 6 chrX 111288941 111289118 -65685022 + MER61B LTR ERV1 240 423 -2 1352 111 42 0 chrX 111289118 111289307 -65684833 + AluSx SINE Alu 111 307 -5 185 163 20 0 chrX 111289411 111289460 -65684680 + (TA)n Simple_repeat Simple_repeat 1 50 0 899 188 0 23 chrX 111289533 111289709 -65684431 - FAM SINE Alu 0 175 4 237 241 11 69 chrX 111289714 111289801 -65684339 - MIR SINE MIR -63 199 118 246 308 66 11 chrX 111289987 111290078 -65684062 - L2 LINE L2 -4 3309 3214 319 388 127 27 chrX 111290359 111290808 -65683332 - L2 LINE L2 -424 2890 2397 2110 137 0 0 chrX 111290821 111291121 -65683019 - AluSx SINE Alu -7 305 6 1986 132 17 7 chrX 111291127 111291423 -65682717 - AluJo SINE Alu -13 299 1 647 139 124 16 chrX 111293263 111293392 -65680748 - FLAM_C SINE Alu 0 143 1 22 35 0 0 chrX 111293593 111293622 -65680518 + AT_rich Low_complexity Low_complexity 1 29 0 376 275 81 34 chrX 111293994 111294143 -65679997 + MIR3 SINE MIR 18 173 -35 293 277 58 52 chrX 111294642 111294737 -65679403 - MIR SINE MIR -76 186 88 2190 108 7 0 chrX 111294737 111295033 -65679107 + AluSx SINE Alu 1 298 -14 293 277 58 52 chrX 111295033 111295092 -65679048 - MIR SINE MIR -174 88 31 840 295 125 37 chrX 111295099 111295219 -65678921 + L2 LINE L2 2731 2839 -474 2519 59 13 0 chrX 111295219 111295523 -65678617 - AluY SINE Alu -3 308 1 840 295 125 37 chrX 111295523 111295936 -65678204 + L2 LINE L2 2839 3311 -2 2226 109 0 26 chrX 111296232 111296543 -65677597 - AluSx SINE Alu -9 303 1 2284 117 0 0 chrX 111296665 111296974 -65677166 + AluSx SINE Alu 1 309 -3 2082 142 0 6 chrX 111297426 111297737 -65676403 - AluSx SINE Alu -3 309 1 408 288 33 13 chrX 111298039 111298192 -65675948 - MIR SINE MIR 0 262 107 2262 121 0 0 chrX 111298436 111298742 -65675398 - AluSx SINE Alu -6 306 1 1005 160 0 0 chrX 111298841 111298997 -65675143 + FRAM SINE Alu 1 154 -22 197 256 0 0 chrX 111299043 111299086 -65675054 + L2 LINE L2 3261 3303 -10 1021 126 6 82 chrX 111300094 111300277 -65673863 - FRAM SINE Alu -6 170 2 1487 155 0 13 chrX 111300957 111301189 -65672951 - AluJb SINE Alu -15 297 69 1756 185 3 7 chrX 111301300 111301592 -65672548 - AluJo SINE Alu -20 292 2 1795 181 0 0 chrX 111302560 111302853 -65671287 - AluJb SINE Alu -19 293 1 1742 173 36 0 chrX 111303143 111303265 -65670875 + AluJb SINE Alu 1 117 -195 207 0 0 0 chrX 111303265 111303288 -65670852 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1742 173 36 0 chrX 111303288 111303466 -65670674 + AluJb SINE Alu 117 312 0 2135 112 3 3 chrX 111303566 111303861 -65670279 + AluSx SINE Alu 1 295 -17 216 0 0 0 chrX 111303879 111303903 -65670237 + (CA)n Simple_repeat Simple_repeat 1 24 0 370 293 21 14 chrX 111303965 111304105 -65670035 + MER102b DNA MER1_type 199 339 -2 2279 184 34 69 chrX 111304153 111304676 -65669464 - MLT1D LTR MaLR 0 505 1 951 154 7 0 chrX 111304958 111305107 -65669033 - FRAM SINE Alu -26 150 1 964 268 16 20 chrX 111305282 111305528 -65668612 + MIR SINE MIR 6 250 -12 1800 168 0 3 chrX 111306011 111306303 -65667837 - AluSx SINE Alu -21 291 1 189 0 0 0 chrX 111306778 111306799 -65667341 + (T)n Simple_repeat Simple_repeat 1 21 0 188 205 103 0 chrX 111307154 111307193 -65666947 + L2 LINE L2 3223 3265 -7 236 225 28 0 chrX 111307718 111307789 -65666351 + A-rich Low_complexity Low_complexity 5 77 0 2375 81 0 31 chrX 111308039 111308362 -65665778 + AluSq SINE Alu 1 313 0 503 268 0 16 chrX 111308606 111308733 -65665407 - MIR SINE MIR -125 137 13 2302 89 0 0 chrX 111309048 111309341 -65664799 - AluY SINE Alu -18 293 1 452 59 15 0 chrX 111310445 111310513 -65663627 + (CA)n Simple_repeat Simple_repeat 2 70 0 1940 139 17 10 chrX 111310539 111310834 -65663306 + AluJb SINE Alu 1 297 -15 740 258 99 9 chrX 111311262 111311483 -65662657 - MIR SINE MIR -2 260 20 383 250 221 0 chrX 111311830 111312002 -65662138 + L2 LINE L2 3099 3308 -5 21 57 0 0 chrX 111312147 111312182 -65661958 + AT_rich Low_complexity Low_complexity 1 35 0 2559 83 0 0 chrX 111312928 111313241 -65660899 - AluSq SINE Alu 0 313 1 1918 170 40 28 chrX 111313314 111313709 -65660431 - L1MA7 LINE L1 -34 6257 5858 227 170 0 21 chrX 111314362 111314409 -65659731 - U5 snRNA snRNA -70 46 1 298 297 156 9 chrX 111314672 111314799 -65659341 - MIR SINE MIR -66 142 19 455 204 129 0 chrX 111314802 111314949 -65659191 + MER113 DNA MER1_type? 5 170 -351 481 270 26 0 chrX 111316189 111316304 -65657836 - L2 LINE L2 -18 3254 3137 1881 143 35 3 chrX 111316698 111316984 -65657156 - AluJb SINE Alu -17 295 1 631 238 160 19 chrX 111317579 111317785 -65656355 - MIR SINE MIR -17 245 11 2186 108 0 0 chrX 111319718 111320006 -65654134 + AluSq SINE Alu 1 288 -25 243 88 0 0 chrX 111320014 111320048 -65654092 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 2623 40 0 3 chrX 111320208 111320511 -65653629 - AluY SINE Alu -9 302 1 466 182 56 84 chrX 111321072 111321151 -65652989 + L1MB8 LINE L1 6040 6120 -58 2212 93 3 3 chrX 111321151 111321441 -65652699 + AluSq SINE Alu 1 290 -23 189 0 0 0 chrX 111321443 111321464 -65652676 + (TA)n Simple_repeat Simple_repeat 1 21 0 466 182 56 84 chrX 111321464 111321524 -65652616 + L1MB8 LINE L1 6121 6178 0 351 0 0 0 chrX 111321558 111321597 -65652543 + (T)n Simple_repeat Simple_repeat 1 39 0 1340 159 13 13 chrX 111321603 111321836 -65652304 - AluJo SINE Alu -79 233 1 191 36 36 0 chrX 111321867 111321895 -65652245 + (CAA)n Simple_repeat Simple_repeat 2 30 0 303 298 63 86 chrX 111322112 111322618 -65651522 - L2 LINE L2 -19 3253 2701 306 303 34 69 chrX 111322948 111323123 -65651017 + L2 LINE L2 2686 2854 -460 2310 94 10 10 chrX 111323728 111324035 -65650105 + AluSg SINE Alu 1 307 -3 234 246 29 14 chrX 111325168 111325237 -65648903 + Charlie4 DNA MER1_type 1882 1951 -10 468 207 73 33 chrX 111325300 111325450 -65648690 - L1ME4a LINE L1 -2 6119 5964 4305 147 56 72 chrX 111327277 111327851 -65646289 - L1MB4 LINE L1 -4 6176 5627 2213 99 14 3 chrX 111327851 111328144 -65645996 - AluSx SINE Alu -16 296 1 4305 147 56 72 chrX 111328144 111328592 -65645548 - L1MB4 LINE L1 -553 5627 5173 753 263 40 26 chrX 111329892 111330075 -65644065 - MIR SINE MIR -8 254 66 2002 210 194 34 chrX 111330075 111330638 -65643502 + MLT1E1 LTR MaLR 2 654 0 753 263 40 26 chrX 111330638 111330682 -65643458 - MIR SINE MIR -196 66 24 1883 129 7 4 chrX 111330682 111330960 -65643180 - AluSx SINE Alu -20 292 14 557 274 74 32 chrX 111331658 111331848 -65642292 - MIR SINE MIR -60 202 5 2041 108 38 7 chrX 111333456 111333744 -65640396 - AluSx SINE Alu -15 297 1 2218 136 8 20 chrX 111334050 111334402 -65639738 - L1MC1 LINE L1 0 6333 5986 699 169 0 25 chrX 111334457 111334575 -65639565 - FLAM_A SINE Alu -18 124 10 1907 151 16 7 chrX 111335598 111335902 -65638238 - AluJo SINE Alu -1 311 5 712 225 12 6 chrX 111336008 111336168 -65637972 - MIR SINE MIR -2 260 100 1874 117 30 4 chrX 111336275 111336540 -65637600 + AluSx SINE Alu 1 272 -40 273 57 0 0 chrX 111336576 111336611 -65637529 + (GGGGA)n Simple_repeat Simple_repeat 3 37 0 2461 67 3 13 chrX 111336615 111336927 -65637213 + AluY SINE Alu 1 309 -2 259 235 0 92 chrX 111336955 111337074 -65637066 - L1MC1 LINE L1 -303 5818 5711 260 309 0 21 chrX 111337099 111337196 -65636944 - MIR SINE MIR -108 154 60 975 221 111 65 chrX 111337372 111337477 -65636663 + MLT1D LTR MaLR 7 106 -361 2446 88 3 0 chrX 111337477 111337784 -65636356 + AluSp SINE Alu 1 308 -5 975 221 111 65 chrX 111337784 111338133 -65636007 + MLT1D LTR MaLR 106 467 0 380 268 52 70 chrX 111338190 111338403 -65635737 - L2 LINE L2 -234 3038 2830 2078 132 29 42 chrX 111338672 111339052 -65635088 - THE1C LTR MaLR 0 375 1 1032 157 18 24 chrX 111339383 111339549 -65634591 - FRAM SINE Alu -19 157 1 214 184 0 41 chrX 111339814 111339863 -65634277 + GA-rich Low_complexity Low_complexity 3 49 0 1948 112 45 0 chrX 111340809 111341096 -65633044 + AluSx SINE Alu 1 300 -12 201 129 0 0 chrX 111342393 111342424 -65631716 + (CA)n Simple_repeat Simple_repeat 1 31 0 2390 172 45 55 chrX 111342836 111343343 -65630797 + MLT1D LTR MaLR 2 503 -2 1928 125 30 3 chrX 111343446 111343742 -65630398 + AluSx SINE Alu 1 304 -8 215 266 86 86 chrX 111345118 111345246 -65628894 + MIR3 SINE MIR 36 163 -45 2014 89 64 0 chrX 111345360 111345641 -65628499 + AluSx SINE Alu 1 299 -13 794 159 8 8 chrX 111346075 111346207 -65627933 - FLAM_C SINE Alu -10 133 2 2210 93 7 0 chrX 111346336 111346626 -65627514 - AluSx SINE Alu -20 292 1 1758 163 3 10 chrX 111346725 111347038 -65627102 - AluJo SINE Alu 0 312 2 2049 118 0 10 chrX 111347683 111347987 -65626153 + AluSx SINE Alu 1 301 -11 415 218 324 0 chrX 111347987 111348129 -65626011 - MIR SINE MIR -67 195 8 202 265 20 0 chrX 111349503 111349552 -65624588 + C-rich Low_complexity Low_complexity 1 50 0 1992 95 49 3 chrX 111349650 111349935 -65624205 + AluSq SINE Alu 2 299 -14 212 269 125 29 chrX 111350046 111350150 -65623990 - L2 LINE L2 -9 3263 3150 264 30 0 0 chrX 111350211 111350244 -65623896 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 428 215 123 31 chrX 111350298 111350428 -65623712 - MIR SINE MIR -55 207 66 928 276 146 32 chrX 111350428 111350866 -65623274 + L3 LINE CR1 1048 1535 -42 437 172 23 11 chrX 111350875 111350962 -65623178 + MER5B DNA MER1_type 21 108 -70 746 252 38 72 chrX 111350983 111351339 -65622801 + L1ME4a LINE L1 5320 5656 -465 650 101 13 132 chrX 111351391 111351517 -65622623 + MER3 DNA MER1_type 29 134 -28 2010 106 0 17 chrX 111351517 111351809 -65622331 - AluSx SINE Alu -23 289 3 650 101 13 132 chrX 111351809 111351841 -65622299 + MER3 DNA MER1_type 134 168 -41 330 256 48 12 chrX 111351880 111352048 -65622092 + L1ME4a LINE L1 5711 5884 -237 1700 168 30 3 chrX 111352067 111352191 -65621949 + AluJb SINE Alu 1 120 -192 181 0 33 33 chrX 111352191 111352221 -65621919 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1700 168 30 3 chrX 111352221 111352400 -65621740 + AluJb SINE Alu 120 312 0 204 290 0 0 chrX 111352400 111352462 -65621678 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 246 230 184 33 chrX 111352463 111352615 -65621525 + L1ME4a LINE L1 5891 6065 -56 2467 37 0 0 chrX 111352662 111352957 -65621183 + AluY SINE Alu 1 295 -16 23 0 0 0 chrX 111354232 111354255 -65619885 + AT_rich Low_complexity Low_complexity 1 23 0 271 245 0 0 chrX 111354759 111354812 -65619328 + L2 LINE L2 3251 3303 -10 207 71 54 71 chrX 111355867 111355923 -65618217 + A-rich Low_complexity Low_complexity 4 58 0 27 0 0 0 chrX 111357099 111357126 -65617014 + GC_rich Low_complexity Low_complexity 1 27 0 274 235 15 0 chrX 111357198 111357266 -65616874 + CT-rich Low_complexity Low_complexity 2 70 0 1085 260 144 25 chrX 111358780 111359330 -65614810 + MLT1L LTR MaLR 1 615 0 982 311 111 7 chrX 111359330 111359766 -65614374 - L2 LINE L2 -45 3268 2784 2189 105 7 0 chrX 111360038 111360343 -65613797 + AluSq SINE Alu 1 307 -6 419 281 6 29 chrX 111360617 111360788 -65613352 + L1MC4a LINE L1 5594 5760 -361 289 246 0 0 chrX 111360788 111360853 -65613287 + L2 LINE L2 3237 3301 -12 282 263 44 29 chrX 111360857 111360994 -65613146 + L1MC4a LINE L1 5759 5897 -1911 199 111 22 22 chrX 111361010 111361022 -65613118 + (TG)n Simple_repeat Simple_repeat 2 13 -33 1879 108 0 89 chrX 111361022 111361346 -65612794 + AluSx SINE Alu 1 295 -17 199 111 22 22 chrX 111361346 111361378 -65612762 + (TG)n Simple_repeat Simple_repeat 12 46 0 1555 238 125 11 chrX 111361439 111361872 -65612268 + L2 LINE L2 2202 2683 -631 1510 227 51 140 chrX 111361931 111362339 -65611801 - MLT1E LTR MaLR -7 586 254 2045 142 7 0 chrX 111362339 111362649 -65611491 + AluSx SINE Alu 1 312 0 1510 227 51 140 chrX 111362649 111362883 -65611257 - MLT1E LTR MaLR -339 254 1 973 266 117 17 chrX 111362920 111363322 -65610818 + L2 LINE L2 2817 3258 -55 650 112 9 17 chrX 111363325 111363441 -65610699 - Charlie5 DNA MER1_type -27 2585 2471 2222 88 0 3 chrX 111363445 111363742 -65610398 + AluSq SINE Alu 5 300 -13 940 128 0 0 chrX 111363752 111363885 -65610255 + AluSq/x SINE Alu 1 133 -179 2059 107 0 0 chrX 111363889 111364193 -65609947 + AluSg SINE Alu 1 304 0 1149 153 5 42 chrX 111364193 111364408 -65609732 + AluJo SINE Alu 84 290 -22 698 206 7 1 chrX 111364415 111364574 -65609566 - MER3 DNA MER1_type -86 123 33 302 231 27 57 chrX 111364772 111364916 -65609224 - MIR SINE MIR -50 212 35 28 61 0 0 chrX 111365117 111365166 -65608974 + AT_rich Low_complexity Low_complexity 1 49 0 58 32 0 21 chrX 111365251 111365320 -65608820 + AT_rich Low_complexity Low_complexity 1 69 -23 2313 72 0 28 chrX 111365320 111365639 -65608501 + AluY SINE Alu 1 310 -1 58 32 0 21 chrX 111365639 111365663 -65608477 + AT_rich Low_complexity Low_complexity 69 92 0 1928 118 11 0 chrX 111365674 111365978 -65608162 + AluSq SINE Alu 3 309 0 3355 132 28 0 chrX 111367584 111368130 -65606010 + L1PB4 LINE L1 5590 6150 -6 204 250 0 0 chrX 111368137 111368185 -65605955 + A-rich Low_complexity Low_complexity 1 48 0 2163 105 3 0 chrX 111368718 111369024 -65605116 + AluSx SINE Alu 1 307 -5 668 220 23 8 chrX 111369203 111369335 -65604805 - AluJo SINE Alu -93 219 86 2333 88 0 3 chrX 111369647 111369954 -65604186 + AluSc SINE Alu 4 309 0 2020 139 0 0 chrX 111370064 111370367 -65603773 + AluSx SINE Alu 3 305 -7 1923 147 3 0 chrX 111370374 111370667 -65603473 + AluJo SINE Alu 1 294 -18 389 241 0 0 chrX 111370670 111370757 -65603383 + L1MC5 LINE L1 7701 7787 -174 * 1769 203 32 42 chrX 111370753 111370917 -65603223 + L1MB5 LINE L1 4865 5029 -1117 1906 134 0 3 chrX 111370917 111371235 -65602905 + AluSx SINE Alu 1 317 0 1769 203 32 42 chrX 111371235 111371541 -65602599 + L1MB5 LINE L1 5029 5331 -815 833 204 0 0 chrX 111371541 111371678 -65602462 + AluJb SINE Alu 167 303 -9 2163 90 0 0 chrX 111371678 111371990 -65602150 + AluSc SINE Alu 1 312 0 4552 184 18 20 chrX 111371992 111372067 -65602073 + L1MB5 LINE L1 5322 5396 -778 2181 97 16 10 chrX 111372067 111372377 -65601763 + AluSx SINE Alu 1 312 0 4552 184 18 20 chrX 111372377 111372468 -65601672 + L1MB5 LINE L1 5396 5486 -688 336 111 0 0 chrX 111372468 111372531 -65601609 + (CA)n Simple_repeat Simple_repeat 2 64 0 4552 184 18 20 chrX 111372531 111373218 -65600922 + L1MB5 LINE L1 5486 6174 0 1212 158 4 35 chrX 111373224 111373452 -65600688 + AluJo SINE Alu 84 304 -8 1138 135 0 68 chrX 111373465 111373687 -65600453 + AluJo SINE Alu 12 218 -94 322 165 55 88 chrX 111373909 111374000 -65600140 + MER91C DNA MER1_type 18 105 -35 2256 88 0 3 chrX 111374012 111374309 -65599831 + AluSq SINE Alu 1 296 -17 1093 134 0 0 chrX 111374410 111374572 -65599568 + FRAM SINE Alu 1 164 -148 2425 41 3 0 chrX 111374572 111374864 -65599276 - AluY SINE Alu -18 293 1 276 170 0 0 chrX 111375183 111375236 -65598904 + (TA)n Simple_repeat Simple_repeat 1 53 0 245 209 15 0 chrX 111375282 111375349 -65598791 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 374 211 22 11 chrX 111375368 111375458 -65598682 + L2 LINE L2 2131 2221 -1093 1797 149 16 6 chrX 111375459 111375775 -65598365 - MER33 DNA MER1_type 0 324 6 613 220 23 0 chrX 111375780 111375912 -65598228 + L2 LINE L2 2215 2349 -965 1836 122 7 11 chrX 111375913 111376199 -65597941 + AluSx SINE Alu 1 285 -27 237 146 48 10 chrX 111376199 111376286 -65597854 + (TA)n Simple_repeat Simple_repeat 1 94 -13 279 0 0 0 chrX 111376286 111376317 -65597823 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 146 48 10 chrX 111376317 111376332 -65597808 + (TA)n Simple_repeat Simple_repeat 94 107 0 216 0 0 0 chrX 111376332 111376356 -65597784 + (GA)n Simple_repeat Simple_repeat 2 25 0 2403 209 63 26 chrX 111376357 111377138 -65597002 + L2 LINE L2 2343 3162 -151 2213 90 3 0 chrX 111377138 111377439 -65596701 - AluSp SINE Alu -11 302 1 2403 209 63 26 chrX 111377439 111377590 -65596550 + L2 LINE L2 3162 3306 -7 1422 107 0 36 chrX 111377717 111377942 -65596198 - AluSq SINE Alu -96 217 1 735 127 0 0 chrX 111377959 111378069 -65596071 - FLAM_C SINE Alu -32 111 2 1629 169 10 10 chrX 111378783 111379073 -65595067 - AluJb SINE Alu -22 290 1 265 293 0 0 chrX 111379076 111379144 -65594996 + (CATG)n Simple_repeat Simple_repeat 1 68 0 1448 172 0 80 chrX 111379370 111379695 -65594445 + AluJo SINE Alu 1 299 -13 1133 136 81 0 chrX 111379815 111380013 -65594127 - AluSx SINE Alu -98 214 1 324 325 119 12 chrX 111380114 111380366 -65593774 + L2 LINE L2 2245 2523 -791 1966 143 0 0 chrX 111380644 111380937 -65593203 + AluJo SINE Alu 1 293 -19 335 133 183 0 chrX 111381155 111381215 -65592925 - AluJ/FRAM SINE Alu -20 282 230 2383 141 123 169 chrX 111381220 111382084 -65592056 - pTR5 LTR ERV1 -220 2218 1395 1363 169 223 22 chrX 111382089 111382456 -65591684 - pTR5 LTR ERV1 -607 1831 1391 253 224 0 0 chrX 111382456 111382505 -65591635 - LTR30 LTR ERV1 -673 49 1 587 192 0 0 chrX 111382510 111382609 -65591531 - FRAM SINE Alu -77 99 1 2129 119 0 3 chrX 111382909 111383219 -65590921 + AluSg SINE Alu 1 309 -1 1029 201 5 31 chrX 111383332 111383556 -65590584 + AluJo SINE Alu 1 218 -94 396 103 0 0 chrX 111383575 111383633 -65590507 + (CA)n Simple_repeat Simple_repeat 1 58 0 329 296 37 7 chrX 111383799 111383934 -65590206 + L1ME4a LINE L1 5333 5471 -650 1703 143 50 0 chrX 111383936 111384216 -65589924 - AluSx SINE Alu -18 294 1 955 145 39 0 chrX 111384364 111384543 -65589597 + MER53 DNA DNA 1 186 -3 1782 97 4 4 chrX 111384849 111385096 -65589044 - AluSx SINE Alu -45 267 21 568 248 72 7 chrX 111385120 111385273 -65588867 + LTR67 LTR ERVL 387 549 -8 1496 158 0 30 chrX 111385330 111385595 -65588545 + AluJo SINE Alu 35 291 -21 452 237 143 104 chrX 111385650 111385694 -65588446 + L1ME4a LINE L1 5671 5712 -409 2110 123 0 0 chrX 111385694 111385986 -65588154 - AluSx SINE Alu -20 292 1 2058 113 0 0 chrX 111385992 111386302 -65587838 - AluSx SINE Alu 0 310 1 452 237 143 104 chrX 111386302 111386506 -65587634 + L1ME4a LINE L1 5716 5911 -210 1796 159 0 0 chrX 111386506 111386802 -65587338 + AluJb SINE Alu 1 296 -16 452 237 143 104 chrX 111386802 111386978 -65587162 + L1ME4a LINE L1 5911 6121 0 1996 130 0 0 chrX 111387453 111387766 -65586374 - AluSx SINE Alu 0 315 3 560 110 0 0 chrX 111388471 111388544 -65585596 - AluSg/x SINE Alu -55 255 183 1898 139 0 57 chrX 111438772 111438920 -65535220 + AluJb SINE Alu 1 156 -156 405 0 0 0 chrX 111438920 111438965 -65535175 + (TA)n Simple_repeat Simple_repeat 2 46 0 1898 139 0 57 chrX 111438965 111439147 -65534993 + AluJb SINE Alu 156 312 0 2177 105 27 0 chrX 111439326 111439621 -65534519 - AluSx SINE Alu -9 303 1 554 239 97 13 chrX 111440368 111440523 -65533617 + MIR3 SINE MIR 36 203 -5 230 182 146 0 chrX 111440835 111440890 -65533250 - MIR3 SINE MIR -21 187 125 438 278 35 17 chrX 111440975 111441090 -65533050 + MIR SINE MIR 16 132 -76 690 150 0 0 chrX 111441208 111441308 -65532832 + AluSc SINE Alu 191 290 -19 1748 158 73 18 chrX 111441308 111441649 -65532491 - MSTB LTR MaLR -64 362 3 880 134 35 53 chrX 111441651 111441822 -65532318 - L1 LINE L1 -912 5234 5067 2416 71 7 0 chrX 111442133 111442429 -65531711 + AluY SINE Alu 1 298 -13 2452 72 0 0 chrX 111442431 111442737 -65531403 + AluY SINE Alu 3 308 -3 2122 116 3 35 chrX 111442872 111443182 -65530958 + AluSx SINE Alu 1 300 -12 378 0 0 0 chrX 111443413 111443455 -65530685 + (TA)n Simple_repeat Simple_repeat 1 42 0 259 287 106 21 chrX 111443999 111444093 -65530047 + MIR3 SINE MIR 97 198 -10 423 209 14 93 chrX 111444312 111444426 -65529714 + MIR SINE MIR 19 122 -86 2252 73 28 0 chrX 111444426 111444712 -65529428 + AluSg SINE Alu 1 294 -16 423 209 14 93 chrX 111444712 111444736 -65529404 + MIR SINE MIR 122 146 -62 1404 171 125 14 chrX 111444755 111445036 -65529104 + AluJo SINE Alu 1 312 0 198 216 39 20 chrX 111446046 111446097 -65528043 - MIR SINE MIR -10 252 201 876 164 36 134 chrX 111449273 111449548 -65524592 - MER46C DNA MER2_type -88 250 3 1873 150 0 0 chrX 111449859 111450139 -65524001 + AluJb SINE Alu 3 282 -30 197 261 0 148 chrX 111450231 111450291 -65523849 - L2 LINE L2 -39 3274 3237 2105 118 0 0 chrX 111450291 111450610 -65523530 + AluSx SINE Alu 6 312 0 197 261 0 148 chrX 111450610 111450664 -65523476 - L2 LINE L2 -76 3237 3177 2625 36 0 3 chrX 111451090 111451395 -65522745 - AluY SINE Alu -7 304 1 1107 197 40 36 chrX 111451705 111451928 -65522212 + MER58A DNA MER1_type 1 224 0 800 117 0 0 chrX 111452455 111452558 -65521582 - AluJb SINE Alu -207 105 3 425 303 120 50 chrX 111452856 111453173 -65520967 - MLT1K LTR MaLR -95 493 155 302 286 63 33 chrX 111453345 111453625 -65520515 + L1ME4a LINE L1 5822 6109 -12 537 135 76 19 chrX 111454265 111454392 -65519748 + MLT1A1 LTR MaLR 1 81 -284 364 294 175 17 chrX 111454392 111454569 -65519571 - L3 LINE CR1 -77 1500 1296 2409 82 0 16 chrX 111454808 111455123 -65519017 - AluSg SINE Alu 0 310 1 891 258 54 17 chrX 111455192 111455432 -65518708 - MIR SINE MIR -1 261 13 221 299 91 0 chrX 111455443 111455520 -65518620 - MIR3 SINE MIR -41 167 84 1055 130 19 6 chrX 111455721 111455883 -65518257 + MLT1E3 LTR MaLR 1 164 -460 1061 76 0 8 chrX 111455883 111456015 -65518125 + AluSg SINE Alu 1 131 -179 1392 18 54 18 chrX 111456019 111456208 -65517932 + L1PA5 LINE L1 5979 6154 0 757 195 136 0 chrX 111456211 111456365 -65517775 + FAM SINE Alu 1 175 0 2039 211 20 49 chrX 111456365 111456854 -65517286 + MLT1E3 LTR MaLR 150 624 0 1112 95 12 18 chrX 111457310 111457478 -65516662 - L1MA7 LINE L1 -9 6282 6116 297 75 0 0 chrX 111457517 111457557 -65516583 + (TG)n Simple_repeat Simple_repeat 2 41 0 470 234 64 14 chrX 111457558 111457699 -65516441 - HAL1 LINE L1 -1142 1365 1218 2755 71 23 3 chrX 111457726 111458078 -65516062 - L1PA13 LINE L1 0 6163 5805 2147 120 0 43 chrX 111458078 111458421 -65515719 - L1MA7 LINE L1 -166 6125 5796 2092 121 26 23 chrX 111459052 111459357 -65514783 + AluSx SINE Alu 1 306 -6 607 250 6 35 chrX 111459985 111460157 -65513983 - L1MEd LINE L1 -4889 1230 1064 753 336 18 11 chrX 111460162 111460436 -65513704 - L1MEd LINE L1 -5404 715 440 2205 108 3 22 chrX 111460668 111460983 -65513157 + AluSx SINE Alu 1 309 -3 2944 118 36 2 chrX 111461438 111461852 -65512288 - MSTA LTR MaLR 0 428 1 1272 108 0 0 chrX 111463318 111463485 -65510655 - AluSg/x SINE Alu -15 295 129 373 250 78 78 chrX 111463642 111463753 -65510387 - MER5A DNA MER1_type 0 189 76 2331 81 0 7 chrX 111463753 111464049 -65510091 - AluY SINE Alu -17 294 1 373 250 78 78 chrX 111464049 111464117 -65510023 - MER5A DNA MER1_type -112 77 10 2003 107 33 0 chrX 111464482 111464753 -65509387 + AluSx SINE Alu 1 280 -32 200 35 35 0 chrX 111464753 111464782 -65509358 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 2266 96 3 3 chrX 111465674 111465967 -65508173 - AluSx SINE Alu -19 293 1 227 378 73 0 chrX 111466967 111467049 -65507091 - L2 LINE L2 -56 3216 3129 446 153 14 0 chrX 111467093 111467165 -65506975 + MER5B DNA MER1_type 3 75 -103 600 89 0 0 chrX 111467176 111467255 -65506885 - AluSq/x SINE Alu -208 105 27 2399 52 0 14 chrX 111467256 111467587 -65506553 - AluY SINE Alu 0 327 1 336 337 234 1 chrX 111467614 111467880 -65506260 - L2 LINE L2 -236 3036 2716 198 0 0 0 chrX 111467892 111467914 -65506226 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2090 117 0 0 chrX 111467950 111468255 -65505885 - AluSx SINE Alu 0 305 1 454 341 92 31 chrX 111468264 111468710 -65505430 - L2 LINE L2 -608 2706 2234 934 176 34 23 chrX 111469106 111469282 -65504858 + MER5B DNA MER1_type 1 178 0 1994 167 54 22 chrX 111469308 111469829 -65504311 - MLT2A2 LTR ERVL 0 554 1 1444 285 51 17 chrX 111469838 111470412 -65503728 - L2 LINE L2 0 3313 2723 479 109 72 0 chrX 111470421 111470559 -65503581 + (TA)n Simple_repeat Simple_repeat 1 148 0 222 37 0 0 chrX 111470572 111470599 -65503541 + (CA)n Simple_repeat Simple_repeat 2 28 0 378 0 0 0 chrX 111470680 111470722 -65503418 + (TG)n Simple_repeat Simple_repeat 2 43 0 297 0 0 0 chrX 111470721 111470754 -65503386 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 1868 167 0 0 chrX 111470826 111471108 -65503032 - AluJb SINE Alu -30 282 1 853 293 16 8 chrX 111471108 111471364 -65502776 - L2 LINE L2 -599 2715 2458 1869 150 3 3 chrX 111471960 111472246 -65501894 - AluJb SINE Alu -24 288 3 242 250 21 52 chrX 111472281 111472377 -65501763 - L1ME4a LINE L1 -95 6026 5934 180 0 0 0 chrX 111472515 111472535 -65501605 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 1617 172 33 13 chrX 111472545 111472847 -65501293 - AluJo SINE Alu 0 312 5 242 241 101 25 chrX 111472855 111472934 -65501206 - L1ME4a LINE L1 -1988 5820 5736 786 270 50 21 chrX 111473036 111473375 -65500765 - L1ME4a LINE L1 -782 5552 5254 1614 161 47 18 chrX 111473439 111473718 -65500422 + AluJo SINE Alu 1 287 -25 26 30 0 0 chrX 111473893 111473926 -65500214 + AT_rich Low_complexity Low_complexity 1 33 0 327 279 29 66 chrX 111473968 111474104 -65500036 - L1ME3A LINE L1 -77 6093 5963 2045 108 19 22 chrX 111474429 111474745 -65499395 + L1MA8 LINE L1 5977 6291 0 1834 170 7 0 chrX 111474838 111475120 -65499020 - AluSx SINE Alu -28 284 1 681 201 47 0 chrX 111475401 111475550 -65498590 - HAL1 LINE L1 -849 1658 1503 1351 283 155 10 chrX 111475555 111476163 -65497977 - L2 LINE L2 -2486 828 133 2138 172 10 34 chrX 111476178 111476561 -65497579 - MLT1A2 LTR MaLR 0 374 1 2197 109 0 22 chrX 111476629 111476941 -65497199 + AluSx SINE Alu 1 305 -7 304 235 86 71 chrX 111477007 111477288 -65496852 - L1ME LINE L1 -520 5601 5327 272 174 0 0 chrX 111477567 111477626 -65496514 - L1P LINE L1 -1120 5026 4968 347 292 93 41 chrX 111477715 111478076 -65496064 - L1ME LINE L1 -1377 4769 4373 1944 58 116 47 chrX 111478076 111478353 -65495787 - AluY SINE Alu -15 296 1 347 292 93 41 chrX 111478353 111478445 -65495695 - L1ME LINE L1 -1773 4373 4287 21 36 0 0 chrX 111478538 111478566 -65495574 + AT_rich Low_complexity Low_complexity 1 28 0 305 300 13 92 chrX 111478669 111478896 -65495244 + L2 LINE L2 2313 2521 -793 464 271 94 100 chrX 111478956 111479285 -65494855 - L2 LINE L2 -1 3271 2945 303 234 16 16 chrX 111479304 111479368 -65494772 - L2 LINE L2 -3 3269 3206 268 139 81 47 chrX 111479410 111479496 -65494644 + Ricksha DNA DNA 63 151 -1895 * 6944 115 69 21 chrX 111479466 111479662 -65494478 + Ricksha DNA DNA 1710 1895 -1351 2391 92 0 0 chrX 111479662 111479957 -65494183 + AluSg SINE Alu 1 295 -15 186 43 0 0 chrX 111479957 111479980 -65494160 + (TA)n Simple_repeat Simple_repeat 2 24 0 6944 115 69 21 chrX 111479980 111480886 -65493254 + Ricksha DNA DNA 1894 2866 -380 1492 121 17 54 chrX 111480887 111481065 -65493075 + Ricksha DNA DNA 2534 2698 -156 2051 134 3 0 chrX 111481065 111481357 -65492783 + AluJb SINE Alu 1 293 -19 1492 121 17 54 chrX 111481357 111481475 -65492665 + Ricksha DNA DNA 2698 2819 -35 717 189 63 21 chrX 111481402 111481593 -65492547 - Ricksha DNA DNA -3046 200 2 * 451 316 78 85 chrX 111481892 111482514 -65491626 - L2 LINE L2 -1 3271 2657 1642 150 71 7 chrX 111483302 111483582 -65490558 - AluJb SINE Alu -14 298 1 384 294 78 51 chrX 111483981 111484274 -65489866 + L1ME4a LINE L1 4918 5218 -928 588 252 124 35 chrX 111484288 111484602 -65489538 + L1ME4a LINE L1 5267 5608 -513 1690 171 7 14 chrX 111484962 111485248 -65488892 + AluJo SINE Alu 1 312 0 213 0 36 0 chrX 111485248 111485276 -65488864 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 471 291 18 18 chrX 111485953 111486118 -65488022 + L1ME4a LINE L1 5605 5769 -352 236 191 143 0 chrX 111486118 111486181 -65487959 + LOR1a LTR ERV1 1 72 -425 2264 143 67 3 chrX 111486220 111486592 -65487548 + LOR1b LTR ERV1 66 461 0 242 316 29 7 chrX 111486594 111486733 -65487407 + L1ME4a LINE L1 5770 5911 -1897 274 246 85 73 chrX 111486763 111487035 -65487105 + L1ME4a LINE L1 5835 6109 -12 671 185 0 54 chrX 111487058 111487188 -65486952 - FLAM_A SINE Alu 0 142 20 516 211 64 0 chrX 111487589 111487698 -65486442 - MER45 DNA AcHobo -1 1580 1465 3459 117 0 16 chrX 111487709 111488060 -65486080 - L1PA14 LINE L1 -9 6152 5797 2368 124 33 30 chrX 111488060 111488423 -65485717 + THE1B LTR MaLR 1 364 0 13248 78 1 1 chrX 111488423 111490002 -65484138 + THE1B-int LTR MaLR 1 1580 0 2507 99 8 79 chrX 111490002 111490394 -65483746 + THE1B LTR MaLR 1 364 0 3459 117 0 16 chrX 111490394 111490527 -65483613 - L1PA14 LINE L1 -361 5800 5674 872 189 39 17 chrX 111490527 111490707 -65483433 - MER45 DNA AcHobo -1397 184 1 300 53 0 0 chrX 111491174 111491212 -65482928 + (TCC)n Simple_repeat Simple_repeat 1 38 0 1558 154 67 28 chrX 111491212 111491497 -65482643 - AluJb SINE Alu -16 296 1 301 127 18 0 chrX 111492091 111492146 -65481994 - L1MB2 LINE L1 -2 6169 6114 2113 123 0 31 chrX 111492149 111492466 -65481674 - AluSx SINE Alu -5 307 1 542 264 29 6 chrX 111492466 111492640 -65481500 - L1MDa LINE L1 -3629 2911 2734 3802 174 59 41 chrX 111492775 111493714 -65480426 - L1MDa LINE L1 -3890 2650 1788 3090 41 0 0 chrX 111493718 111494062 -65480078 + LTR14A LTR ERVK 1 344 0 46687 48 3 2 chrX 111494062 111499583 -65474557 + HERVK14 LTR ERVK 1 5524 -421 796 253 43 47 chrX 111499587 111499844 -65474296 + pTR5 LTR ERV1 736 991 -1447 4691 78 124 0 chrX 111500028 111500640 -65473500 + LTR12 LTR ERV1 1 688 0 1554 65 0 20 chrX 111500654 111500853 -65473287 + HERVK14 LTR ERVK 5565 5759 -186 396 159 0 18 chrX 111500853 111500928 -65473212 + MER41C LTR ERV1 1 61 -493 797 69 0 43 chrX 111500928 111501044 -65473096 + HERVK14 LTR ERVK 5835 5945 0 2905 45 30 0 chrX 111501047 111501381 -65472759 + LTR14A LTR ERVK 1 344 0 4160 200 75 39 chrX 111501381 111501927 -65472213 - L1MDa LINE L1 -4749 1791 1266 1911 167 3 0 chrX 111501927 111502238 -65471902 - AluSx SINE Alu 0 312 1 4160 200 75 39 chrX 111502238 111503253 -65470887 - L1MDa LINE L1 -5274 1266 96 796 280 64 21 chrX 111503751 111504222 -65469918 - L1MEc LINE L1 -4618 1778 1288 436 255 33 39 chrX 111504303 111504456 -65469684 - L1MEc LINE L1 -5965 240 89 552 313 44 0 chrX 111504708 111504890 -65469250 + MIR SINE MIR 67 256 -6 225 0 0 0 chrX 111505204 111505229 -65468911 + (TTA)n Simple_repeat Simple_repeat 3 27 0 8191 20 0 0 chrX 111505229 111506306 -65467834 - L1PA3 LINE L1 -18 6137 5061 808 272 53 4 chrX 111507887 111508130 -65466010 + MIR SINE MIR 8 262 0 819 146 5 119 chrX 111508442 111508627 -65465513 - FRAM SINE Alu -11 165 2 717 281 167 26 chrX 111509528 111509905 -65464235 + L3 LINE CR1 409 838 -739 21 36 0 0 chrX 111510123 111510151 -65463989 + AT_rich Low_complexity Low_complexity 1 28 0 316 167 15 15 chrX 111510243 111510309 -65463831 + MIR SINE MIR 74 139 -123 515 196 118 0 chrX 111510523 111510625 -65463515 + MIR SINE MIR 7 120 -142 586 126 63 157 chrX 111510626 111510849 -65463291 - ORSL DNA AcHobo 0 275 74 696 103 0 0 chrX 111510849 111510936 -65463204 - FAM SINE Alu -18 167 81 16138 104 65 57 chrX 111511182 111515121 -65459019 + HERV9 LTR ERV1 1 2438 0 5997 87 14 1 chrX 111515121 111515897 -65458243 + HERV9 LTR ERV1 4946 5731 -2668 1403 98 50 114 chrX 111515890 111516196 -65457944 + LTR12 LTR ERV1 253 714 0 * 575 198 28 28 chrX 111516372 111516478 -65457662 - AluJo SINE Alu -87 225 120 264 262 0 0 chrX 111516480 111516541 -65457599 - ORSL DNA AcHobo -211 64 4 382 284 43 0 chrX 111516546 111516662 -65457478 + MIR SINE MIR 116 236 -26 887 234 93 90 chrX 111516879 111517104 -65457036 - L1MC/D LINE L1 -2035 5773 5545 1738 147 6 35 chrX 111517104 111517418 -65456722 + AluJb SINE Alu 1 305 -7 887 234 93 90 chrX 111517418 111517602 -65456538 - L1MC/D LINE L1 -2263 5545 5363 2116 88 53 0 chrX 111517604 111517887 -65456253 + AluSx SINE Alu 1 298 -14 1509 170 66 38 chrX 111517897 111518186 -65455954 + AluJo SINE Alu 1 297 -15 684 208 0 0 chrX 111518188 111518308 -65455832 + FLAM_C SINE Alu 22 141 -2 46 0 0 0 chrX 111518311 111518357 -65455783 + AT_rich Low_complexity Low_complexity 1 46 0 293 201 167 52 chrX 111518357 111518610 -65455530 - L1MC/D LINE L1 -774 5372 5095 401 256 123 45 chrX 111518737 111519117 -65455023 - L1M4 LINE L1 -977 5169 4763 798 287 30 17 chrX 111519132 111519432 -65454708 - L1M4 LINE L1 -2155 3991 3688 265 288 36 9 chrX 111519687 111519798 -65454342 - L1M4 LINE L1 -2708 3438 3325 1709 153 11 21 chrX 111519904 111520191 -65453949 - AluJb SINE Alu -28 284 1 1897 154 18 21 chrX 111520201 111520538 -65453602 - L1MB8 LINE L1 -1 6177 5842 2158 123 125 14 chrX 111520602 111520953 -65453187 - MLT1B LTR MaLR 0 390 1 201 195 0 0 chrX 111521355 111521396 -65452744 + (TG)n Simple_repeat Simple_repeat 2 42 0 449 246 0 75 chrX 111521397 111521531 -65452609 - L1MB8 LINE L1 -2002 5806 5683 286 257 98 44 chrX 111522824 111523007 -65451133 - L1ME4a LINE L1 0 6121 5929 1269 75 0 0 chrX 111523405 111523565 -65450575 - L1MA4 LINE L1 -15 6285 6126 5585 151 36 3 chrX 111523572 111524508 -65449632 - L1MA5 LINE L1 -7 6293 5327 2537 42 0 0 chrX 111524787 111525075 -65449065 - L1PA4 LINE L1 0 6155 5868 2023 21 0 0 chrX 111525075 111525308 -65448832 + L1P2 LINE L1 5327 5559 -596 3504 141 13 0 chrX 111525436 111525990 -65448150 - L1MC1 LINE L1 -88 6245 5685 1320 148 9 23 chrX 111525992 111526208 -65447932 - AluJo SINE Alu -7 305 93 1098 137 0 18 chrX 111526220 111526388 -65447752 - AluJo SINE Alu -17 295 131 28 0 0 0 chrX 111526390 111526418 -65447722 + AT_rich Low_complexity Low_complexity 1 28 0 3140 77 19 19 chrX 111526418 111526574 -65447566 - L1MA1 LINE L1 -8 6294 6139 2174 121 0 7 chrX 111526574 111526879 -65447261 - AluSx SINE Alu -9 303 1 3140 77 19 19 chrX 111526879 111527149 -65446991 - L1MA1 LINE L1 -162 6140 5868 18500 142 70 30 chrX 111527149 111527231 -65446909 - L1M1 LINE L1 -4117 3448 3371 1935 153 184 11 chrX 111527231 111527596 -65446544 - MSTA LTR MaLR 0 428 1 18500 142 70 30 chrX 111527596 111527615 -65446525 - L1M1 LINE L1 -4194 3371 3354 2392 92 0 3 chrX 111527615 111527918 -65446222 - AluSq SINE Alu -11 302 1 18500 142 70 30 chrX 111527918 111531033 -65443107 - L1M1 LINE L1 -4211 3354 90 243 0 0 0 chrX 111531033 111531060 -65443080 + (TG)n Simple_repeat Simple_repeat 2 28 0 18500 142 70 30 chrX 111531060 111531151 -65442989 - L1M1 LINE L1 -7475 90 4 823 152 8 0 chrX 111531153 111531278 -65442862 - AluJo SINE Alu -186 126 1 2810 132 5 24 chrX 111531279 111531646 -65442494 - L1MC1 LINE L1 -641 5692 5333 1665 176 3 32 chrX 111531646 111531958 -65442182 - AluJo SINE Alu -9 303 1 2810 132 5 24 chrX 111531958 111532061 -65442079 - L1MC1 LINE L1 -1000 5333 5230 867 131 0 0 chrX 111532385 111532515 -65441625 - FLAM_C SINE Alu -1 142 13 227 293 0 0 chrX 111534098 111534156 -65439984 + L2 LINE L2 3251 3308 -5 553 328 147 52 chrX 111534182 111534217 -65439923 - L2 LINE L2 -899 2415 2385 1981 121 10 14 chrX 111534217 111534514 -65439626 + AluSq SINE Alu 1 296 -17 553 328 147 52 chrX 111534514 111535345 -65438795 - L2 LINE L2 -929 2385 1467 1334 169 51 44 chrX 111535642 111535938 -65438202 + AluJo SINE Alu 1 298 -14 315 254 0 0 chrX 111536326 111536393 -65437747 - MIR SINE MIR -12 250 184 1082 145 56 28 chrX 111536410 111536589 -65437551 + THE1B LTR MaLR 181 364 0 1901 90 34 0 chrX 111536589 111536856 -65437284 + L1MA2 LINE L1 6029 6304 0 811 214 6 6 chrX 111536867 111537026 -65437114 + MER58B DNA MER1_type 172 330 -11 1594 176 18 76 chrX 111537026 111537356 -65436784 + AluJo SINE Alu 1 311 -1 274 267 151 0 chrX 111537375 111537461 -65436679 - L2 LINE L2 -1 3312 3214 249 274 43 123 chrX 111537482 111537807 -65436333 - L2 LINE L2 -2815 499 201 449 211 119 9 chrX 111538302 111538411 -65435729 + L2 LINE L2 3193 3313 0 297 0 0 0 chrX 111538512 111538545 -65435595 + (TG)n Simple_repeat Simple_repeat 2 34 0 720 210 174 9 chrX 111538959 111539183 -65434957 + MIR SINE MIR 2 262 0 833 104 88 0 chrX 111539286 111539411 -65434729 - MER85 DNA T2_type 0 139 4 264 111 0 0 chrX 111539978 111540023 -65434117 + (CA)n Simple_repeat Simple_repeat 2 46 0 240 35 0 0 chrX 111540043 111540072 -65434068 + (TC)n Simple_repeat Simple_repeat 2 30 0 1971 148 7 0 chrX 111540072 111540356 -65433784 - AluJo SINE Alu -26 286 1 293 228 18 70 chrX 111540723 111540837 -65433303 + L1ME4a LINE L1 6012 6119 -2 2598 45 0 13 chrX 111541876 111542190 -65431950 - AluY SINE Alu -1 310 1 201 343 14 0 chrX 111542941 111543014 -65431126 + MIR SINE MIR 35 108 -154 191 243 71 29 chrX 111544016 111544086 -65430054 + L2 LINE L2 2418 2490 -824 1330 256 97 34 chrX 111544112 111544557 -65429583 + MLT1J LTR MaLR 1 473 -38 198 299 65 19 chrX 111544829 111544936 -65429204 + L2 LINE L2 2618 2729 -585 522 248 0 0 chrX 111545116 111545217 -65428923 - MER91B DNA MER1_type 0 190 90 1845 159 0 7 chrX 111545324 111545614 -65428526 + AluJo SINE Alu 1 288 -24 206 271 9 112 chrX 111545625 111545732 -65428408 - MER91B DNA MER1_type -94 96 1 440 271 10 0 chrX 111546032 111546128 -65428012 - MER94 DNA DNA -1 133 37 44199 42 4 5 chrX 111546578 111552737 -65421403 - L1PA4 LINE L1 0 6155 7 231 377 58 7 chrX 111552963 111553101 -65421039 - L2 LINE L2 -1130 2184 2040 680 209 7 22 chrX 111553107 111553246 -65420894 + AluJo SINE Alu 2 138 -174 194 344 42 0 chrX 111553247 111553343 -65420797 - L2 LINE L2 -1283 2031 1932 182 286 29 14 chrX 111553627 111553697 -65420443 - L2 LINE L2 -1713 1601 1531 566 264 102 34 chrX 111555316 111555551 -65418589 - MIR SINE MIR -4 258 8 2235 119 0 0 chrX 111556638 111556931 -65417209 + AluSx SINE Alu 1 293 -19 2850 147 59 2 chrX 111557801 111558276 -65415864 + L1MB2 LINE L1 5652 6153 -18 3503 166 61 33 chrX 111558286 111559005 -65415135 - L1MA9 LINE L1 -38 6274 5536 25 0 0 0 chrX 111559026 111559051 -65415089 + AT_rich Low_complexity Low_complexity 1 25 0 1239 141 9 27 chrX 111559067 111559287 -65414853 + AluJb SINE Alu 97 312 0 1590 207 31 23 chrX 111559287 111559639 -65414501 + MLT1C LTR MaLR 113 467 0 542 211 0 0 chrX 111559640 111559735 -65414405 + L2 LINE L2 3213 3307 -6 571 247 0 41 chrX 111559736 111559761 -65414379 - L1MC5 LINE L1 -58 7903 7879 597 241 110 16 chrX 111559761 111559952 -65414188 + MER63A DNA MER1_type 1 209 -1 571 247 0 41 chrX 111559952 111560072 -65414068 - L1MC5 LINE L1 -82 7879 7764 899 218 19 53 chrX 111560156 111561171 -65412969 - L1MC5 LINE L1 -216 7745 6625 458 296 121 42 chrX 111561236 111561731 -65412409 - L1MA9 LINE L1 -941 5205 4672 2037 138 0 13 chrX 111561852 111562156 -65411984 + AluJb SINE Alu 1 300 -12 865 129 17 17 chrX 111562199 111562377 -65411763 + CT-rich Low_complexity Low_complexity 2 179 0 664 216 60 0 chrX 111562377 111562687 -65411453 - FRAM SINE Alu 0 351 34 236 226 29 69 chrX 111562708 111562810 -65411330 - L1 LINE L1 -1116 5030 4933 260 91 23 0 chrX 111564122 111564166 -65409974 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 2157 89 25 0 chrX 111565175 111565457 -65408683 + AluSc SINE Alu 1 289 -20 1455 216 3 14 chrX 111566351 111566642 -65407498 - AluJo SINE Alu -23 289 2 802 176 0 0 chrX 111566790 111566915 -65407225 + FLAM_C SINE Alu 1 125 -18 526 69 14 0 chrX 111566924 111566996 -65407144 + L1MA9 LINE L1 6240 6312 0 1174 193 79 4 chrX 111567337 111567565 -65406575 + MLT1D LTR MaLR 261 505 0 2054 160 0 0 chrX 111567672 111567984 -65406156 + AluSx SINE Alu 1 312 0 351 0 0 0 chrX 111569010 111569049 -65405091 + (TG)n Simple_repeat Simple_repeat 1 39 0 1475 271 113 18 chrX 111569811 111570678 -65403462 - L1MC5 LINE L1 -743 5403 4964 509 206 83 76 chrX 111570710 111570986 -65403154 - L1ME4a LINE L1 -1 6120 5843 1227 217 25 8 chrX 111571048 111571283 -65402857 - MER8 DNA MER2_type 0 239 1 315 319 43 58 chrX 111571716 111571923 -65402217 - L2 LINE L2 -225 3047 2844 22 56 0 0 chrX 111571991 111572027 -65402113 + AT_rich Low_complexity Low_complexity 1 36 0 737 196 116 40 chrX 111572086 111572362 -65401778 - L1MC5 LINE L1 -28 7933 7637 1830 191 10 48 chrX 111574457 111574786 -65399354 - L1ME4a LINE L1 -515 5651 5340 2387 69 10 0 chrX 111574786 111575076 -65399064 - AluSc SINE Alu -16 293 1 1830 191 10 48 chrX 111575076 111575160 -65398980 - L1ME4a LINE L1 -826 5340 5254 1757 164 217 23 chrX 111575172 111575610 -65398530 + L1ME1 LINE L1 5636 6158 -8 816 199 0 0 chrX 111575971 111576303 -65397837 + (CA)n Simple_repeat Simple_repeat 1 332 0 287 317 24 72 chrX 111576446 111576613 -65397527 + L2 LINE L2 2919 3077 -195 943 190 74 62 chrX 111576784 111576817 -65397323 + MIR SINE MIR 2 33 -229 2260 95 14 0 chrX 111576817 111577111 -65397029 + AluSc SINE Alu 1 298 -11 943 190 74 62 chrX 111577111 111577335 -65396805 + MIR SINE MIR 33 262 0 266 323 100 31 chrX 111578156 111578286 -65395854 + MIR3 SINE MIR 21 159 -49 570 250 0 0 chrX 111579024 111579140 -65395000 - MER63A DNA MER1_type -38 172 57 672 186 8 101 chrX 111579160 111579310 -65394830 - L1MDb LINE L1 -5086 1323 1203 1758 120 67 25 chrX 111579310 111579593 -65394547 + AluSx SINE Alu 1 295 -17 672 186 8 101 chrX 111579593 111579689 -65394451 - L1MDb LINE L1 -5206 1203 1100 2486 51 0 3 chrX 111579701 111579997 -65394143 - AluY SINE Alu -16 295 1 283 236 34 45 chrX 111580009 111580098 -65394042 - MIR SINE MIR -113 149 62 277 228 0 18 chrX 111580167 111580224 -65393916 + MER63 DNA MER1_type 3 684 -378 336 102 0 0 chrX 111580549 111580598 -65393542 + (TC)n Simple_repeat Simple_repeat 1 49 0 1552 167 35 17 chrX 111580598 111580885 -65393255 - AluJb SINE Alu -20 292 1 358 212 121 0 chrX 111580887 111580986 -65393154 + MIR SINE MIR 103 213 -49 225 0 0 0 chrX 111581712 111581737 -65392403 + (CAG)n Simple_repeat Simple_repeat 2 26 0 252 304 14 40 chrX 111581796 111581944 -65392196 + MIR3 SINE MIR 3 146 -62 273 242 20 61 chrX 111582313 111582412 -65391728 + MIR SINE MIR 96 190 -72 1823 172 0 23 chrX 111582716 111583018 -65391122 - AluJb SINE Alu -17 295 1 552 350 93 52 chrX 111583256 111583935 -65390205 - L2 LINE L2 -3 3269 2557 741 242 58 58 chrX 111584228 111584521 -65389619 + MER102b DNA MER1_type 47 339 -2 2470 48 0 3 chrX 111584543 111584837 -65389303 - AluY SINE Alu -18 293 1 186 373 0 15 chrX 111585104 111585171 -65388969 + L2 LINE L2 3121 3186 -86 236 188 14 0 chrX 111585191 111585260 -65388880 + (TA)n Simple_repeat Simple_repeat 2 71 0 307 214 22 45 chrX 111585430 111585519 -65388621 - L1MC4 LINE L1 -1346 6696 6610 303 326 0 0 chrX 111585563 111585652 -65388488 - L1MC4 LINE L1 -1340 6702 6614 289 284 39 29 chrX 111585681 111585783 -65388357 + MIR SINE MIR 142 244 -18 348 300 29 135 chrX 111586543 111586883 -65387257 - L2 LINE L2 -3 3269 2966 635 270 20 7 chrX 111586920 111587072 -65387068 - MIR SINE MIR -75 187 34 1390 165 23 129 chrX 111587663 111588051 -65386089 - MER7A DNA MER2_type -1 345 1 229 421 9 0 chrX 111588499 111588606 -65385534 + L2 LINE L2 2571 2678 -636 345 283 28 34 chrX 111588715 111588892 -65385248 - L1ME4a LINE L1 0 6121 5946 859 139 0 0 chrX 111589018 111589140 -65385000 + FLAM_A SINE Alu 1 122 -11 532 305 78 54 chrX 111589195 111589693 -65384447 - L1MC4 LINE L1 -1888 5920 5411 322 304 108 57 chrX 111589729 111590025 -65384115 - L1MC4 LINE L1 -807 5339 5029 337 307 53 37 chrX 111590093 111590526 -65383614 - L1MC4 LINE L1 -1209 4937 4498 2558 62 0 0 chrX 111590680 111590989 -65383151 + AluY SINE Alu 2 310 -1 1663 162 27 30 chrX 111591519 111591815 -65382325 + AluJo SINE Alu 1 295 -17 1970 214 43 75 chrX 111592033 111592593 -65381547 + MLT1F1 LTR MaLR 1 567 0 401 331 16 0 chrX 111592593 111592717 -65381423 + L2 LINE L2 3188 3313 0 984 159 0 0 chrX 111593444 111593595 -65380545 - FRAM SINE Alu -12 154 4 186 186 70 0 chrX 111593964 111594007 -65380133 - L2 LINE L2 -5 3267 3222 502 254 119 35 chrX 111594070 111594271 -65379869 - MIR SINE MIR -14 248 31 574 282 84 20 chrX 111594684 111594886 -65379254 - MIR SINE MIR 0 262 48 2010 139 7 0 chrX 111594892 111595206 -65378934 + AluSx SINE Alu 2 317 0 1897 148 10 72 chrX 111595523 111595923 -65378217 - MLT1B LTR MaLR 0 390 16 233 313 0 12 chrX 111596402 111596482 -65377658 + GA-rich Low_complexity Low_complexity 4 82 0 647 289 32 5 chrX 111596799 111596986 -65377154 + MIR SINE MIR 67 258 -4 1866 154 0 19 chrX 111597752 111598063 -65376077 + AluJo SINE Alu 1 305 -7 2169 112 0 3 chrX 111598138 111598433 -65375707 - AluSx SINE Alu -18 294 1 632 215 104 110 chrX 111598513 111599004 -65375136 - L1M1 LINE L1 -362 5800 5328 359 203 51 0 chrX 111599005 111599084 -65375056 + MIR SINE MIR 180 262 0 263 247 156 17 chrX 111599110 111599341 -65374799 - L1M4 LINE L1 -853 5293 5031 817 207 0 0 chrX 111599346 111599491 -65374649 + FRAM SINE Alu 1 145 -31 976 109 0 7 chrX 111599571 111599708 -65374432 - AluJb SINE Alu -176 136 1 699 270 61 60 chrX 111599733 111600100 -65374040 - L1M4 LINE L1 -1228 4918 4553 2285 88 16 7 chrX 111600100 111600405 -65373735 - AluSc SINE Alu -1 308 1 2221 97 10 0 chrX 111600412 111600702 -65373438 - AluSp SINE Alu -15 298 6 699 270 61 60 chrX 111600702 111600918 -65373222 - L1M4 LINE L1 -1598 4548 4323 2059 103 62 3 chrX 111600918 111601210 -65372930 - AluSx SINE Alu 0 312 4 699 270 61 60 chrX 111601210 111601268 -65372872 - L1M4 LINE L1 -1823 4323 4267 21 82 0 0 chrX 111601334 111601383 -65372757 + AT_rich Low_complexity Low_complexity 1 49 0 198 0 0 0 chrX 111601383 111601405 -65372735 + (TG)n Simple_repeat Simple_repeat 2 23 0 781 264 110 77 chrX 111601657 111601726 -65372414 - L1M4 LINE L1 -2918 3228 3163 1561 186 3 17 chrX 111601726 111602016 -65372124 - AluJb SINE Alu -26 286 1 781 264 110 77 chrX 111602016 111602518 -65371622 - L1M4 LINE L1 -2983 3163 2638 250 103 0 69 chrX 111603995 111604053 -65370087 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 2246 113 7 0 chrX 111604055 111604364 -65369776 - AluSx SINE Alu -1 311 1 400 195 39 47 chrX 111604900 111605028 -65369112 + L1MC5 LINE L1 7404 7530 -431 362 272 28 46 chrX 111605124 111605340 -65368800 + L1ME3A LINE L1 5961 6170 0 731 138 0 17 chrX 111605413 111605529 -65368611 - AluJb SINE Alu -195 117 4 1755 193 0 13 chrX 111607171 111607472 -65366668 + AluJo SINE Alu 1 297 -15 529 56 0 0 chrX 111607657 111607728 -65366412 - L1PA7 LINE L1 -4 6150 6080 2268 92 38 0 chrX 111609873 111610166 -65363974 - AluSc SINE Alu -5 304 1 21 0 0 0 chrX 111610408 111610429 -65363711 + AT_rich Low_complexity Low_complexity 1 21 0 1225 209 46 42 chrX 111610636 111610919 -65363221 + AluJo SINE Alu 3 286 -26 1318 102 0 0 chrX 111610926 111611093 -65363047 + AluY SINE Alu 1 167 -144 1718 176 30 7 chrX 111611463 111611759 -65362381 + AluSx SINE Alu 1 303 -9 2040 107 20 24 chrX 111611825 111612123 -65362017 + AluSx SINE Alu 1 297 -15 1443 176 23 60 chrX 111614494 111614796 -65359344 + AluJb SINE Alu 1 291 -21 517 146 0 4 chrX 111615823 111615959 -65358181 - MER53 DNA DNA 0 189 1 2220 90 3 35 chrX 111616158 111616470 -65357670 + AluSq SINE Alu 12 313 0 392 350 62 12 chrX 111617498 111617658 -65356482 + L2 LINE L2 3104 3271 -1 353 215 38 13 chrX 111617655 111617734 -65356406 - MIR3 SINE MIR -30 178 98 * 1340 291 218 8 chrX 111617773 111618391 -65355749 - L3 LINE CR1 -77 1500 753 1139 145 0 0 chrX 111618404 111618570 -65355570 + AluJb SINE Alu 147 312 0 497 319 0 0 chrX 111618577 111618693 -65355447 - L3 LINE CR1 -831 746 631 425 355 90 20 chrX 111618705 111619060 -65355080 - L3 LINE CR1 -1133 444 65 736 219 83 94 chrX 111619463 111619845 -65354295 + L1MC5 LINE L1 7385 7761 -200 2157 67 42 3 chrX 111619845 111620130 -65354010 + AluY SINE Alu 1 296 -15 736 219 83 94 chrX 111620130 111620277 -65353863 + L1MC5 LINE L1 7761 7908 -53 303 203 125 0 chrX 111620320 111620384 -65353756 - MIR SINE MIR -118 90 19 497 242 39 39 chrX 111620639 111620767 -65353373 + L2 LINE L2 3186 3313 0 294 282 0 0 chrX 111620780 111620851 -65353289 + MIR3 SINE MIR 117 187 -21 1090 196 4 22 chrX 111621139 111621364 -65352776 - AluJb SINE Alu -91 221 1 757 266 130 50 chrX 111621365 111621866 -65352274 - L1M4 LINE L1 -2968 3178 2638 250 103 0 69 chrX 111623343 111623401 -65350739 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 2246 113 7 0 chrX 111623403 111623712 -65350428 - AluSx SINE Alu -1 311 1 400 195 39 47 chrX 111624248 111624376 -65349764 + L1MC5 LINE L1 7404 7530 -431 363 253 37 56 chrX 111624472 111624688 -65349452 + L1ME3A LINE L1 5961 6170 0 233 342 0 13 chrX 111625712 111625867 -65348273 - L1MC4a LINE L1 -402 7406 7254 1502 238 55 102 chrX 111625878 111626146 -65347994 - L1MC4 LINE L1 -728 7233 6954 1956 139 17 17 chrX 111626146 111626447 -65347693 - AluJo SINE Alu -11 301 1 1502 238 55 102 chrX 111626447 111627149 -65346991 - L1MC4 LINE L1 -1007 6954 6220 1711 163 3 11 chrX 111627149 111627456 -65346684 + AluJb SINE Alu 3 307 0 1502 238 55 102 chrX 111627456 111627852 -65346288 - L1MC4 LINE L1 -1741 6220 5944 398 52 0 17 chrX 111627852 111627910 -65346230 + (TG)n Simple_repeat Simple_repeat 2 58 0 1502 238 55 102 chrX 111627910 111628088 -65346052 - L1MC4 LINE L1 -2017 5944 5759 2085 125 27 0 chrX 111628106 111628402 -65345738 - L1PB4 LINE L1 -1 6155 5852 524 143 0 0 chrX 111628402 111628486 -65345654 + AluS SINE Alu 222 305 -4 2365 94 50 36 chrX 111628486 111628586 -65345554 - L1PB4 LINE L1 -285 5871 5774 4915 115 29 6 chrX 111628586 111629301 -65344839 - L1PA16 LINE L1 0 6166 5435 2365 94 50 36 chrX 111629301 111629584 -65344556 - L1PB4 LINE L1 -382 5774 5483 392 280 68 0 chrX 111629584 111629702 -65344438 - L1MC4 LINE L1 -2040 5768 5643 279 214 204 10 chrX 111630168 111630266 -65343874 + MIR3 SINE MIR 86 202 -6 327 104 0 0 chrX 111630470 111630518 -65343622 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 1772 117 8 0 chrX 111630518 111630765 -65343375 - AluSq SINE Alu -64 249 1 197 235 0 20 chrX 111630834 111630885 -65343255 - L2 LINE L2 0 3313 3264 264 251 145 34 chrX 111631647 111631768 -65342372 - MIR SINE MIR -61 147 13 219 226 75 0 chrX 111632084 111632137 -65342003 + MIR3 SINE MIR 151 207 -1 215 150 25 0 chrX 111632294 111632334 -65341806 + T-rich Low_complexity Low_complexity 1 41 0 212 250 76 22 chrX 111632403 111632495 -65341645 - MIR SINE MIR -64 198 102 219 69 0 0 chrX 111632694 111632723 -65341417 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 582 263 152 48 chrX 111632973 111633262 -65340878 - L2 LINE L2 0 3313 2995 301 286 0 0 chrX 111633275 111633352 -65340788 + LTR16B LTR ERVL 7 83 -381 232 236 101 11 chrX 111633468 111633557 -65340583 + LTR16B LTR ERVL 241 337 -127 414 324 133 9 chrX 111634277 111634487 -65339653 + MIR SINE MIR 21 256 -6 2965 136 2 12 chrX 111635029 111635456 -65338684 - MER61B LTR ERV1 0 425 3 638 286 53 16 chrX 111635531 111635720 -65338420 + MIR SINE MIR 59 254 -8 594 318 9 19 chrX 111635845 111636056 -65338084 + MIR SINE MIR 52 260 -2 22 35 0 0 chrX 111636370 111636399 -65337741 + AT_rich Low_complexity Low_complexity 1 29 0 2291 101 3 0 chrX 111636399 111636697 -65337443 - AluSx SINE Alu -13 299 1 242 316 132 26 chrX 111637603 111637755 -65336385 + MIR3 SINE MIR 32 199 -9 331 202 12 48 chrX 111637919 111638003 -65336137 + L2 LINE L2 3229 3309 -4 834 144 64 0 chrX 111638108 111638233 -65335907 + FLAM_C SINE Alu 1 133 0 564 179 116 36 chrX 111638262 111638374 -65335766 - FLAM_A SINE Alu -12 121 1 679 296 210 18 chrX 111638857 111639367 -65334773 + L2 LINE L2 1727 2334 -980 325 348 117 37 chrX 111639378 111639703 -65334437 + L2 LINE L2 2607 2957 -357 360 176 0 0 chrX 111639705 111639773 -65334367 + CT-rich Low_complexity Low_complexity 1 68 0 2158 92 31 0 chrX 111639773 111640066 -65334074 - AluSg SINE Alu -8 302 1 656 217 87 57 chrX 111640788 111641018 -65333122 + L1ME3 LINE L1 5934 6170 0 1692 150 42 36 chrX 111641392 111641699 -65332441 - AluJo SINE Alu 0 312 4 250 229 0 0 chrX 111641821 111641869 -65332271 + L2 LINE L2 3219 3266 -6 195 42 0 0 chrX 111642217 111642241 -65331899 + (TG)n Simple_repeat Simple_repeat 1 24 0 673 178 8 59 chrX 111642241 111642359 -65331781 - FLAM_A SINE Alu -30 112 1 440 255 69 40 chrX 111642532 111642681 -65331459 - MIR SINE MIR -65 143 38 2391 93 0 0 chrX 111642819 111643121 -65331019 - AluSx SINE Alu -10 302 1 1094 233 57 8 chrX 111643353 111643598 -65330542 + MIR SINE MIR 3 259 -3 812 165 0 0 chrX 111644509 111644630 -65329510 + FLAM_A SINE Alu 1 121 -12 456 19 0 0 chrX 111646598 111646651 -65327489 + (GA)n Simple_repeat Simple_repeat 2 54 0 250 132 0 0 chrX 111646830 111646868 -65327272 - MIR SINE MIR -66 196 159 1180 228 121 105 chrX 111647022 111647278 -65326862 - MER21B LTR ERV1 -93 770 520 2122 129 16 0 chrX 111647278 111647581 -65326559 + AluSx SINE Alu 1 308 -4 1180 228 121 105 chrX 111647581 111648070 -65326070 - MER21B LTR ERV1 -343 520 13 619 181 61 37 chrX 111648083 111648242 -65325898 - MIR SINE MIR -63 145 3 1968 123 9 35 chrX 111648449 111648765 -65325375 - AluSx SINE Alu -4 308 1 194 194 81 65 chrX 111648877 111648939 -65325201 - L2 LINE L2 -17 3255 3193 297 0 0 0 chrX 111649025 111649058 -65325082 + (TC)n Simple_repeat Simple_repeat 2 34 0 698 156 0 0 chrX 111649058 111649154 -65324986 - FLAM_C SINE Alu -21 122 27 2919 53 9 0 chrX 111649177 111649517 -65324623 - L1PA7 LINE L1 -8 6146 5804 455 353 0 18 chrX 111650062 111650229 -65323911 + MIR3 SINE MIR 4 167 -41 221 197 0 98 chrX 111650384 111650445 -65323695 + MIR3 SINE MIR 150 204 -4 483 272 41 24 chrX 111650708 111650877 -65323263 - MIR SINE MIR -14 248 77 680 269 11 29 chrX 111652296 111652398 -65321742 + MIR3 SINE MIR 35 134 -74 2613 193 35 10 chrX 111652398 111652891 -65321249 + MLT1D LTR MaLR 1 505 0 680 269 11 29 chrX 111652891 111652963 -65321177 + MIR3 SINE MIR 134 206 -2 1827 153 7 3 chrX 111653150 111653444 -65320696 + AluJo SINE Alu 11 305 -7 540 81 0 0 chrX 111654109 111654183 -65319957 + (TTCCC)n Simple_repeat Simple_repeat 1 74 0 972 161 0 0 chrX 111654213 111654362 -65319778 - FRAM SINE Alu -30 146 1 244 227 45 15 chrX 111654497 111654563 -65319577 - Charlie8 DNA MER1_type -989 1428 1361 * 1388 246 56 69 chrX 111654559 111655079 -65319061 - Charlie8 DNA MER1_type -1896 521 9 27 0 0 0 chrX 111655087 111655114 -65319026 + AT_rich Low_complexity Low_complexity 1 27 0 1562 165 9 86 chrX 111655232 111655559 -65318581 + AluJb SINE Alu 9 310 -2 686 194 91 46 chrX 111657081 111657256 -65316884 - MIR3 SINE MIR -3 205 23 290 45 23 0 chrX 111657851 111657895 -65316245 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1614 177 8 0 chrX 111657908 111658174 -65315966 - AluJo SINE Alu -44 268 1 484 181 0 0 chrX 111658579 111658651 -65315489 + FLAM SINE Alu 46 117 -26 2180 100 0 4 chrX 111658797 111659097 -65315043 + AluSg SINE Alu 1 299 0 362 229 12 0 chrX 111659345 111659428 -65314712 - L2 LINE L2 -310 3003 2920 821 204 17 117 chrX 111659497 111659737 -65314403 - L2 LINE L2 -855 2459 2244 234 308 209 39 chrX 111660617 111660799 -65313341 - L2 LINE L2 -211 3061 2849 804 227 48 5 chrX 111660812 111661019 -65313121 + MIR SINE MIR 5 220 -42 259 195 0 69 chrX 111661071 111661158 -65312982 + L1ME4a LINE L1 5976 6056 -65 1817 163 0 3 chrX 111661236 111661518 -65312622 + AluSx SINE Alu 3 283 -29 1899 141 3 0 chrX 111661707 111661991 -65312149 + AluJb SINE Alu 1 285 -27 836 154 122 19 chrX 111662242 111662398 -65311742 + FAM SINE Alu 4 175 0 5176 100 16 12 chrX 111662554 111663242 -65310898 - LTR8 LTR ERV1 0 691 1 442 285 122 69 chrX 111663347 111663898 -65310242 - L2 LINE L2 -543 2771 2192 911 198 12 6 chrX 111663947 111664114 -65310026 - FRAM SINE Alu -8 168 1 2093 129 3 0 chrX 111664999 111665293 -65308847 + AluSx SINE Alu 1 295 -17 386 78 0 16 chrX 111665384 111665448 -65308692 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 460 247 0 0 chrX 111665587 111665668 -65308472 + AluJ/FLAM SINE Alu 2 82 -230 556 208 10 0 chrX 111666249 111666345 -65307795 - FLAM_A SINE Alu -20 122 26 22 0 0 0 chrX 111666821 111666843 -65307297 + AT_rich Low_complexity Low_complexity 1 22 0 1436 185 3 57 chrX 111667641 111667955 -65306185 - AluJo SINE Alu -15 297 1 838 153 7 7 chrX 111667957 111668094 -65306046 - FLAM_C SINE Alu -6 137 1 243 0 0 0 chrX 111668185 111668212 -65305928 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1430 155 4 59 chrX 111668234 111668386 -65305754 - AluJo SINE Alu -45 267 135 2164 96 0 0 chrX 111668386 111668656 -65305484 + AluSg SINE Alu 21 290 -20 1430 155 4 59 chrX 111668656 111668774 -65305366 - AluJo SINE Alu -177 135 12 586 88 9 7 chrX 111668854 111669069 -65305071 + AluSq SINE Alu 1 265 -48 387 0 0 0 chrX 111669087 111669130 -65305010 + (CA)n Simple_repeat Simple_repeat 2 44 0 1655 182 82 32 chrX 111669317 111669719 -65304421 + L1 LINE L1 4110 4531 -1615 839 28 0 9 chrX 111669819 111669926 -65304214 + (TTCC)n Simple_repeat Simple_repeat 2 107 0 306 0 0 0 chrX 111669924 111669958 -65304182 + (TC)n Simple_repeat Simple_repeat 1 34 0 * 2174 101 27 0 chrX 111669958 111670254 -65303886 - AluSp SINE Alu -9 304 1 1652 159 22 53 chrX 111670550 111670870 -65303270 - AluJo SINE Alu -2 310 1 283 232 61 10 chrX 111670870 111670969 -65303171 - L1ME4a LINE L1 -3 6118 6015 21 0 0 0 chrX 111671924 111671945 -65302195 + AT_rich Low_complexity Low_complexity 1 21 0 217 273 126 56 chrX 111672242 111672385 -65301755 - L2 LINE L2 -2 3311 3159 486 261 0 36 chrX 111673505 111673643 -65300497 - L2 LINE L2 -1 3312 3180 221 294 118 12 chrX 111674066 111674151 -65299989 + MIR SINE MIR 56 149 -113 * 525 303 42 18 chrX 111674142 111674307 -65299833 - MIR3 SINE MIR -6 202 34 481 256 119 93 chrX 111674410 111674796 -65299344 + L1ME3A LINE L1 5539 5934 -236 1157 158 16 5 chrX 111674802 111674986 -65299154 + AluJb SINE Alu 104 289 -23 369 102 0 0 chrX 111674989 111675048 -65299092 + (TATG)n Simple_repeat Simple_repeat 2 60 0 2254 110 0 3 chrX 111875513 111875814 -65098326 - AluSx SINE Alu -12 300 1 23 68 0 0 chrX 111875884 111875928 -65098212 + AT_rich Low_complexity Low_complexity 1 44 0 295 193 0 0 chrX 111877102 111877159 -65096981 + LTR60 LTR ERV1 1 57 -529 1109 242 43 18 chrX 111877282 111877608 -65096532 + LTR43 LTR ERV1 132 465 -137 346 215 0 175 chrX 111878249 111878336 -65095804 - L1ME4a LINE L1 -2 6119 6085 2060 151 3 0 chrX 111878336 111878647 -65095493 + AluJb SINE Alu 1 312 0 346 215 0 175 chrX 111878647 111878759 -65095381 - L1ME4a LINE L1 -36 6085 5955 27 29 0 0 chrX 111879129 111879163 -65094977 + AT_rich Low_complexity Low_complexity 1 34 0 1464 239 103 48 chrX 111879300 111880201 -65093939 - L1MC4a LINE L1 -746 5400 4965 28 29 0 0 chrX 111880413 111880448 -65093692 + AT_rich Low_complexity Low_complexity 1 35 0 1434 220 19 0 chrX 111880645 111880963 -65093177 + L1M4 LINE L1 4902 5225 -921 273 119 0 0 chrX 111881342 111881384 -65092756 + (A)n Simple_repeat Simple_repeat 1 42 0 32 0 0 0 chrX 111881421 111881453 -65092687 + AT_rich Low_complexity Low_complexity 1 32 0 194 225 0 14 chrX 111882148 111882219 -65091921 + (TA)n Simple_repeat Simple_repeat 2 71 0 669 146 0 16 chrX 111882797 111882920 -65091220 - L1MB8 LINE L1 0 6178 6058 269 104 62 0 chrX 111882922 111882970 -65091170 + L1M4 LINE L1 4454 4504 -1642 2506 37 7 7 chrX 111882991 111883286 -65090854 + AluY SINE Alu 1 295 -16 1299 82 6 0 chrX 111883389 111883547 -65090593 - AluSx SINE Alu -153 159 1 251 234 57 32 chrX 111883626 111883750 -65090390 - L1MB8 LINE L1 -173 6005 5879 * 274 231 51 26 chrX 111883719 111883797 -65090343 - L1MC4a LINE L1 -1300 4846 4763 455 115 77 0 chrX 111883797 111883875 -65090265 - L1PA16 LINE L1 -1 6165 6082 274 231 51 26 chrX 111883875 111883913 -65090227 - L1MC4a LINE L1 -1383 4763 4727 3698 197 13 0 chrX 111883931 111884628 -65089512 - L1PA13 LINE L1 -4541 2246 1541 258 309 11 99 chrX 111884642 111884823 -65089317 + L2 LINE L2 2553 2717 -597 1586 292 116 41 chrX 111884823 111885537 -65088603 + L2 LINE L2 1909 2568 -746 1964 156 0 0 chrX 111885537 111885991 -65088149 - AluSx SINE Alu 0 454 1 270 0 0 0 chrX 111886001 111886031 -65088109 + (TCCC)n Simple_repeat Simple_repeat 1 30 0 592 191 86 0 chrX 111886030 111886257 -65087883 - FLAM_A SINE Alu 0 236 1 1586 292 116 41 chrX 111886257 111886406 -65087734 + L2 LINE L2 2802 2851 -463 826 308 118 26 chrX 111886569 111886985 -65087155 + L2 LINE L2 2859 3312 -1 2576 65 0 0 chrX 111887040 111887348 -65086792 + AluY SINE Alu 1 308 -3 266 0 29 0 chrX 111887350 111887384 -65086756 + (GA)n Simple_repeat Simple_repeat 2 36 0 1434 200 75 101 chrX 111887385 111887737 -65086403 - MLT2B1 LTR ERVL -68 452 113 1596 159 59 21 chrX 111887737 111888027 -65086113 - AluJo SINE Alu -5 307 7 1434 200 75 101 chrX 111888027 111888138 -65086002 - MLT2B1 LTR ERVL -407 113 1 1709 172 131 31 chrX 111888358 111888718 -65085422 + MSTD LTR MaLR 1 396 0 1899 148 7 14 chrX 111889157 111889447 -65084693 + AluSx SINE Alu 1 288 -24 473 248 183 0 chrX 111889777 111889930 -65084210 + MIR SINE MIR 82 262 0 502 275 0 30 chrX 111889980 111890111 -65084029 + MIR SINE MIR 20 146 -62 2164 121 0 0 chrX 111890874 111891163 -65082977 + AluSg SINE Alu 1 289 -21 452 300 71 52 chrX 111891851 111892061 -65082079 - MIR SINE MIR 0 262 49 2052 108 25 0 chrX 111893874 111894153 -65079987 + AluSq SINE Alu 1 286 -27 3319 139 27 23 chrX 111895727 111896163 -65077977 + L1PB4 LINE L1 5590 6030 -126 2338 77 0 7 chrX 111896163 111896460 -65077680 + AluY SINE Alu 1 295 -16 3319 139 27 23 chrX 111896460 111896582 -65077558 + L1PB4 LINE L1 6030 6150 -6 2256 115 0 0 chrX 111897592 111897896 -65076244 - AluSg SINE Alu -6 304 1 1889 154 10 10 chrX 111898021 111898319 -65075821 + AluJb SINE Alu 1 298 -14 943 162 30 0 chrX 111898526 111898693 -65075447 - L1MB2 LINE L1 0 6171 6000 1809 154 0 33 chrX 111898768 111899073 -65075067 - AluJb SINE Alu -1 311 17 2845 54 24 0 chrX 111899328 111899664 -65074476 - LTR14A LTR ERVK 0 344 1 625 270 7 0 chrX 111899727 111899875 -65074265 + MIR SINE MIR 31 179 -83 447 68 0 0 chrX 111899922 111899981 -65074159 + (CTG)n Simple_repeat Simple_repeat 1 59 0 2169 167 74 10 chrX 111900439 111900846 -65073294 + MER63B DNA MER1_type 1 433 -3 2353 100 0 0 chrX 111901002 111901301 -65072839 - AluSq SINE Alu -14 299 1 571 273 152 31 chrX 111901756 111902045 -65072095 + L2 LINE L2 2949 3272 0 435 273 194 0 chrX 111902485 111902624 -65071516 - MIR SINE MIR -92 170 5 4551 126 16 126 chrX 111902734 111904282 -65069858 - pTR5 LTR ERV1 0 2606 1524 180 0 0 0 chrX 111906320 111906340 -65067800 + (GA)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chrX 111906693 111906715 -65067425 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 901 168 142 26 chrX 111907558 111907784 -65066356 - L1MB8 LINE L1 -116 6062 5811 1236 185 44 13 chrX 111907891 111908208 -65065932 - L1MB7 LINE L1 -8 6176 5814 * 6991 174 42 54 chrX 111908203 111909319 -65064821 - L1MB8 LINE L1 0 6178 5050 1784 111 153 27 chrX 111909319 111909652 -65064488 - THE1C LTR MaLR 0 375 1 6991 174 42 54 chrX 111909652 111909813 -65064327 - L1MB8 LINE L1 -1128 5050 4889 4109 58 0 0 chrX 111909813 111910292 -65063848 - L1PA7 LINE L1 -5 6149 5671 6991 174 42 54 chrX 111910292 111911523 -65062617 - L1MB8 LINE L1 -1289 4889 3673 394 169 0 39 chrX 111911938 111912015 -65062125 + L1MB8 LINE L1 6105 6178 0 361 220 158 62 chrX 111912017 111912258 -65061882 - L1ME4a LINE L1 -23 6098 5835 193 203 76 101 chrX 111912611 111912690 -65061450 + MIR SINE MIR 158 234 -28 1796 121 86 7 chrX 111912714 111912994 -65061146 - AluJb SINE Alu -10 302 1 199 185 93 0 chrX 111913001 111913055 -65061085 - L3 LINE CR1 -573 1004 946 724 205 10 62 chrX 111913241 111913436 -65060704 + MIR SINE MIR 7 191 -71 278 356 0 26 chrX 111913422 111913537 -65060603 - MIR SINE MIR -131 131 20 * 24 0 0 0 chrX 111914273 111914297 -65059843 + AT_rich Low_complexity Low_complexity 1 24 0 665 298 71 8 chrX 111915116 111915354 -65058786 + MIR SINE MIR 10 262 0 264 365 47 0 chrX 111915572 111915679 -65058461 + L2 LINE L2 3193 3304 -9 5356 140 12 23 chrX 111917444 111918344 -65055796 - L1MB5 LINE L1 0 6174 5285 1131 147 167 131 chrX 111918344 111918786 -65055354 - MER4A LTR ERV1 0 664 207 925 183 0 0 chrX 111919053 111919206 -65054934 + FAM SINE Alu 20 172 -13 564 247 33 30 chrX 111919283 111919491 -65054649 - MIR3 SINE MIR -46 216 10 1057 264 12 19 chrX 111919536 111919794 -65054346 - MIR SINE MIR 0 262 7 1342 166 8 60 chrX 111920852 111921117 -65053023 + L1PB4 LINE L1 5906 6156 0 1915 96 82 34 chrX 111921324 111921616 -65052524 - AluSc SINE Alu -3 306 1 309 272 65 38 chrX 111921817 111922001 -65052139 - MER5A DNA MER1_type 0 189 1 1121 247 78 55 chrX 111922795 111923052 -65051088 - L2 LINE L2 -24 3289 3015 2232 104 7 10 chrX 111923052 111923359 -65050781 - AluSx SINE Alu -6 306 1 1121 247 78 55 chrX 111923359 111923574 -65050566 - L2 LINE L2 -298 3015 2806 2200 104 13 10 chrX 111925993 111926291 -65047849 + AluSp SINE Alu 1 299 -14 485 309 45 6 chrX 111926397 111926575 -65047565 - MIR3 SINE MIR -21 187 3 313 274 78 10 chrX 111927035 111927137 -65047003 - MIR SINE MIR -116 146 38 2239 99 0 13 chrX 111928855 111929205 -65044935 - AluY SINE Alu 0 311 1 2580 93 52 3 chrX 111929586 111929953 -65044187 - L1PB3 LINE L1 -2 6152 5768 3350 98 6 0 chrX 111930171 111930643 -65043497 - L1PB3 LINE L1 -375 5779 5305 989 137 0 29 chrX 111930629 111930804 -65043336 - L1PBb LINE L1 -5291 1572 1403 * 597 273 16 0 chrX 111930804 111930987 -65043153 - L1PBb LINE L1 -6669 194 9 1990 91 20 0 chrX 111931115 111931367 -65042773 + AluSg SINE Alu 1 257 -53 401 59 0 0 chrX 111931455 111931506 -65042634 + AluSg SINE Alu 246 296 -15 1636 189 7 7 chrX 111936503 111936789 -65037351 + AluJb SINE Alu 1 286 -26 1236 92 107 5 chrX 111936927 111937123 -65037017 - L1PB1 LINE L1 -1 6150 5935 1772 140 22 38 chrX 111937657 111937971 -65036169 - AluJb SINE Alu -3 309 1 779 216 6 28 chrX 111939412 111939593 -65034547 - MER5B DNA MER1_type -1 177 1 2486 60 3 19 chrX 111940380 111940695 -65033445 - AluY SINE Alu -1 310 1 2392 64 0 14 chrX 111943134 111943431 -65030709 - AluY SINE Alu -18 293 1 963 130 118 0 chrX 111944412 111944581 -65029559 - MER5A DNA MER1_type 0 189 1 940 181 204 4 chrX 111944678 111944948 -65029192 - MER33 DNA MER1_type 0 324 1 210 71 0 0 chrX 111945791 111945819 -65028321 + (A)n Simple_repeat Simple_repeat 1 28 0 366 61 0 0 chrX 111948251 111948300 -65025840 + (TCC)n Simple_repeat Simple_repeat 1 49 0 394 207 11 11 chrX 111949088 111949175 -65024965 - MER58 DNA MER1_type -8 2412 2326 2551 51 0 3 chrX 111949231 111949526 -65024614 - AluY SINE Alu -17 294 1 212 312 78 0 chrX 111950864 111950941 -65023199 + L2 LINE L2 3230 3312 -1 439 266 216 22 chrX 111951577 111951896 -65022244 + L2 LINE L2 650 1030 -2284 2118 189 44 40 chrX 111951919 111952415 -65021725 + MLT1D LTR MaLR 7 504 -1 198 339 156 23 chrX 111952426 111952644 -65021496 + L2 LINE L2 1065 1311 -2003 388 232 16 97 chrX 111952676 111952861 -65021279 + L2 LINE L2 726 895 -2419 1145 304 156 18 chrX 111952870 111953696 -65020444 + L2 LINE L2 1880 2819 -495 426 287 19 0 chrX 111953790 111953898 -65020242 + MER91A DNA MER1_type 10 119 -77 471 244 218 13 chrX 111953917 111954151 -65019989 + L2 LINE L2 2982 3263 -50 279 0 0 0 chrX 111954633 111954664 -65019476 + (T)n Simple_repeat Simple_repeat 1 31 0 333 0 0 0 chrX 111955507 111955544 -65018596 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 887 224 9 29 chrX 111956292 111956502 -65017638 + MIR SINE MIR 27 232 -30 219 271 0 0 chrX 111956523 111956571 -65017569 - L2 LINE L2 -88 3184 3137 2951 196 31 18 chrX 111956960 111957566 -65016574 + MER90 LTR ERV1 1 614 0 2172 113 3 3 chrX 111957827 111958119 -65016021 + AluSx SINE Alu 2 293 -19 484 55 14 14 chrX 111958119 111958192 -65015948 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 328 277 0 0 chrX 111958299 111958382 -65015758 + MIR SINE MIR 1 83 -179 410 171 0 13 chrX 111959437 111959513 -65014627 - L1MC/D LINE L1 -849 5510 5436 6459 131 26 13 chrX 111959520 111961355 -65012785 - L1MA9 LINE L1 -6 6306 4451 347 218 148 28 chrX 111961873 111962015 -65012125 + L1ME4a LINE L1 5943 6101 -20 619 155 0 0 chrX 111962016 111962119 -65012021 - L1MC1 LINE L1 0 6333 6231 1865 165 0 3 chrX 111962127 111962418 -65011722 - AluJo SINE Alu -22 290 1 1808 168 0 20 chrX 111962942 111963234 -65010906 + AluJb SINE Alu 1 286 -26 1733 179 0 25 chrX 111963360 111963678 -65010462 + AluJo SINE Alu 1 310 -2 213 277 127 12 chrX 111963953 111964051 -65010089 + MIR SINE MIR 50 156 -63 718 168 99 82 chrX 111964111 111964343 -65009797 + pTR5 LTR ERV1 743 978 -1460 2653 145 156 52 chrX 111964449 111965035 -65009105 + pTR5 LTR ERV1 1352 2037 -401 227 221 35 23 chrX 111965035 111965121 -65009019 + LTR30 LTR ERV1 556 642 -80 1720 59 54 0 chrX 111965123 111965345 -65008795 + LTR12 LTR ERV1 481 714 0 530 299 166 0 chrX 111965699 111965916 -65008224 + MIR SINE MIR 10 262 0 23 0 0 0 chrX 111965951 111965974 -65008166 + AT_rich Low_complexity Low_complexity 1 23 0 5078 82 26 57 chrX 111965952 111966728 -65007412 - L1PA10 LINE L1 0 6168 5417 247 314 103 6 chrX 111966781 111966937 -65007203 + MIR SINE MIR 11 181 -81 2155 100 0 45 chrX 111966982 111967293 -65006847 - AluSx SINE Alu -15 297 1 200 224 35 17 chrX 111967628 111967686 -65006454 + CT-rich Low_complexity Low_complexity 3 61 0 2453 72 7 3 chrX 111968601 111968905 -65005235 + AluY SINE Alu 1 305 -6 476 162 20 0 chrX 111971383 111971482 -65002658 + (CATA)n Simple_repeat Simple_repeat 2 102 0 368 273 36 61 chrX 111971743 111971908 -65002232 + MIR SINE MIR 92 252 -10 2124 126 0 25 chrX 111972093 111972382 -65001758 + AluSx SINE Alu 1 283 -29 180 0 0 0 chrX 111972382 111972402 -65001738 + (CA)n Simple_repeat Simple_repeat 1 20 0 2124 126 0 25 chrX 111972402 111972430 -65001710 + AluSx SINE Alu 283 310 -2 352 189 11 11 chrX 111972432 111972522 -65001618 + GA-rich Low_complexity Low_complexity 3 92 0 545 294 31 5 chrX 111972814 111973008 -65001132 - MIR SINE MIR 0 262 64 2355 90 7 10 chrX 111973705 111974015 -65000125 - AluSq SINE Alu -4 309 1 1224 230 159 31 chrX 111975436 111975889 -64998251 + MLT1J LTR MaLR 1 511 0 2518 65 10 0 chrX 111976223 111976531 -64997609 + AluY SINE Alu 1 311 0 246 321 143 0 chrX 111977458 111977598 -64996542 - MIR3 SINE MIR -3 205 46 234 102 0 61 chrX 111979266 111979315 -64994825 + L1MD2 LINE L1 6304 6349 -10 763 222 16 79 chrX 111980031 111980068 -64994072 - MIR SINE MIR -8 254 216 1549 181 93 48 chrX 111980068 111980444 -64993696 + MSTD LTR MaLR 1 393 -3 763 222 16 79 chrX 111980444 111980658 -64993482 - MIR SINE MIR -46 216 19 315 220 50 57 chrX 111981609 111982057 -64992083 - MER5A DNA MER1_type 0 189 50 2314 114 3 0 chrX 111981729 111982037 -64992103 - AluSx SINE Alu -3 309 1 190 274 59 65 chrX 111982037 111982092 -64992048 + MER5A DNA MER1_type 132 186 -3 456 216 46 138 chrX 111982745 111982798 -64991342 - MIR SINE MIR -49 213 157 2221 109 0 3 chrX 111982798 111983091 -64991049 + AluSx SINE Alu 1 292 -20 456 216 46 138 chrX 111983091 111983255 -64990885 - MIR SINE MIR -105 157 16 1035 193 21 5 chrX 111983403 111983590 -64990550 + MER63A DNA MER1_type 1 190 -20 357 182 84 84 chrX 111984903 111985046 -64989094 + L1ME4a LINE L1 5967 6109 -12 2336 86 6 22 chrX 111985845 111985981 -64988159 + AluSx SINE Alu 1 138 -174 2436 46 0 3 chrX 111985981 111986295 -64987845 + AluY SINE Alu 1 313 0 2336 86 6 22 chrX 111986295 111986471 -64987669 + AluSx SINE Alu 138 309 -3 261 57 0 0 chrX 111987115 111987150 -64986990 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 234 0 0 chrX 111987383 111987447 -64986693 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 232 254 0 16 chrX 111987862 111987925 -64986215 - MIR SINE MIR -80 128 67 236 229 0 0 chrX 111987974 111988022 -64986118 + MER5B DNA MER1_type 1 48 -130 733 238 0 0 chrX 111988023 111988187 -64985953 - L1MA10 LINE L1 -2 6332 6169 439 220 33 47 chrX 111988212 111988362 -64985778 + MER5B DNA MER1_type 31 178 0 1196 258 158 43 chrX 111988719 111989534 -64984606 + L1ME3A LINE L1 4137 5045 -1101 426 157 0 67 chrX 111989539 111989628 -64984512 + FRAM/FAM SINE Alu 1 81 -95 513 273 66 56 chrX 111989673 111989785 -64984355 + L1ME3A LINE L1 5042 5151 -995 2000 126 58 0 chrX 111989785 111990079 -64984061 + AluSx SINE Alu 1 311 -1 513 273 66 56 chrX 111990079 111990252 -64983888 + L1ME3A LINE L1 5151 5330 -816 1141 233 53 113 chrX 111990262 111990785 -64983355 + L1ME3A LINE L1 5674 6165 -5 432 246 58 56 chrX 111991375 111991538 -64982602 - MIR SINE MIR -62 146 6 206 121 30 0 chrX 111991627 111991660 -64982480 + CT-rich Low_complexity Low_complexity 3 36 0 592 141 16 0 chrX 111991957 111992078 -64982062 + GA-rich Low_complexity Low_complexity 1 123 0 189 0 0 0 chrX 111993021 111993042 -64981098 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1453 136 164 8 chrX 111993887 111994137 -64980003 + AluSg1 SINE Alu 1 289 -20 23 54 0 0 chrX 111994139 111994176 -64979964 + AT_rich Low_complexity Low_complexity 1 37 0 12733 188 91 16 chrX 111994231 111995895 -64978245 - L1PB1 LINE L1 -1 6866 5328 2459 87 0 0 chrX 111995895 111996206 -64977934 - AluY SINE Alu 0 311 1 12733 188 91 16 chrX 111996206 111998146 -64975994 - L1PB1 LINE L1 -1539 5328 3535 2347 92 3 0 chrX 111998146 111998439 -64975701 + AluSg SINE Alu 1 294 -16 12733 188 91 16 chrX 111998439 112000597 -64973543 - L1PB1 LINE L1 -3332 3535 652 266 266 37 18 chrX 112000594 112000703 -64973437 - L1PB1 LINE L1 -6664 199 89 * 625 227 72 21 chrX 112000981 112001175 -64972965 - MIR SINE MIR 0 262 59 2062 133 20 0 chrX 112001700 112002000 -64972140 + AluSx SINE Alu 1 306 -6 221 213 0 0 chrX 112003036 112003083 -64971057 - MIR SINE MIR -168 94 48 1686 119 0 76 chrX 112005286 112005563 -64968577 + AluJb SINE Alu 28 283 -29 340 250 107 60 chrX 112006083 112006251 -64967889 - MER5B DNA MER1_type 0 178 3 423 0 0 0 chrX 112006755 112006802 -64967338 + (TG)n Simple_repeat Simple_repeat 2 48 0 587 304 39 23 chrX 112008561 112008818 -64965322 + MIR SINE MIR 2 262 0 580 292 72 24 chrX 112010115 112010324 -64963816 - MIR SINE MIR -41 221 3 379 280 80 13 chrX 112010469 112010619 -64963521 - MIR3 SINE MIR -32 176 17 2236 100 3 0 chrX 112011354 112011653 -64962487 - AluSx SINE Alu -12 300 1 981 216 136 13 chrX 112012362 112012663 -64961477 + MER46C DNA MER2_type 1 338 0 267 308 93 24 chrX 112012768 112012921 -64961219 - MIR SINE MIR -62 146 40 2029 124 17 3 chrX 112013267 112013566 -64960574 + AluSx SINE Alu 1 303 -9 2336 68 0 10 chrX 112013570 112013878 -64960262 + AluY SINE Alu 7 311 0 240 111 0 0 chrX 112013895 112013931 -64960209 + (GGAA)n Simple_repeat Simple_repeat 4 39 0 1068 220 25 29 chrX 112013932 112014177 -64959963 - MIR SINE MIR -10 252 9 189 350 130 20 chrX 112014634 112014734 -64959406 + MIR SINE MIR 32 142 -66 548 231 31 8 chrX 112015147 112015277 -64958863 - MIR3 SINE MIR -8 200 68 363 189 16 63 chrX 112016866 112016993 -64957147 + (CAGAGA)n Simple_repeat Simple_repeat 2 122 0 225 178 0 0 chrX 112019877 112019922 -64954218 + GA-rich Low_complexity Low_complexity 1 45 0 283 274 261 59 chrX 112019947 112020100 -64954040 + MIR3 SINE MIR 22 205 -3 2386 66 0 7 chrX 112020240 112020541 -64953599 - AluSp SINE Alu -14 299 1 268 315 14 0 chrX 112021736 112021809 -64952331 - L2 LINE L2 -1 3312 3239 1422 120 131 44 chrX 112021816 112022090 -64952050 + AluSg SINE Alu 1 298 -12 186 337 87 0 chrX 112022504 112022596 -64951544 - MER5A DNA MER1_type -35 154 55 2074 114 3 16 chrX 112022696 112023012 -64951128 + AluSx SINE Alu 1 312 0 568 183 0 0 chrX 112023116 112023220 -64950920 + AluSg/x SINE Alu 209 312 0 198 0 0 0 chrX 112023220 112023242 -64950898 + (GGAA)n Simple_repeat Simple_repeat 3 24 0 297 365 43 0 chrX 112023260 112023375 -64950765 - MIR SINE MIR -61 147 28 1551 117 4 9 chrX 112023426 112023657 -64950483 - AluSp SINE Alu -12 301 72 321 287 108 19 chrX 112023715 112023872 -64950268 - L2 LINE L2 -1 3312 3142 1985 80 0 0 chrX 112024085 112024335 -64949805 - AluSx SINE Alu -62 250 1 287 209 35 23 chrX 112024498 112024584 -64949556 - MIR SINE MIR -60 148 62 5086 145 8 46 chrX 112025245 112025604 -64948536 - L1MB3 LINE L1 0 6183 5812 1786 161 0 7 chrX 112025604 112025908 -64948232 - AluSx SINE Alu -10 302 1 5086 145 8 46 chrX 112025908 112026469 -64947671 - L1MB3 LINE L1 -371 5812 5300 2360 65 0 0 chrX 112026469 112026787 -64947353 + AluY SINE Alu 1 311 0 5086 145 8 46 chrX 112026787 112026909 -64947231 - L1MB3 LINE L1 -883 5300 5175 493 231 127 52 chrX 112026965 112027138 -64947002 + MIR SINE MIR 77 262 0 786 312 50 32 chrX 112027454 112027912 -64946228 - L2 LINE L2 -169 3103 2639 213 377 44 18 chrX 112028365 112028479 -64945661 + MIR3 SINE MIR 5 121 -87 194 402 49 30 chrX 112029638 112029802 -64944338 - L2 LINE L2 -1 3271 3105 344 310 103 21 chrX 112030084 112030229 -64943911 + L2 LINE L2 3116 3272 0 227 260 229 0 chrX 112031033 112031129 -64943011 + MIR SINE MIR 29 146 -62 711 219 10 75 chrX 112031129 112031330 -64942810 + L1MEc LINE L1 35 222 -6174 7991 187 59 30 chrX 112031335 112032422 -64941718 - L1MB7 LINE L1 -9 6175 5122 2147 104 10 3 chrX 112032422 112032731 -64941409 - AluSq SINE Alu -2 311 1 7991 187 59 30 chrX 112032731 112033109 -64941031 - L1MB7 LINE L1 -1062 5122 4757 2183 104 7 0 chrX 112033109 112033416 -64940724 - AluSc SINE Alu 0 309 1 7991 187 59 30 chrX 112033416 112034114 -64940026 - L1MB7 LINE L1 -1427 4757 4081 1972 93 35 14 chrX 112034114 112034403 -64939737 - AluSx SINE Alu -17 295 1 7991 187 59 30 chrX 112034403 112034525 -64939615 - L1MB7 LINE L1 -2103 4081 3964 1928 127 9 43 chrX 112034525 112034848 -64939292 - AluSx SINE Alu 0 312 1 7991 187 59 30 chrX 112034848 112035086 -64939054 - L1MB7 LINE L1 -2220 3964 3735 2047 78 0 46 chrX 112035086 112035256 -64938884 - AluSg SINE Alu -18 292 116 262 0 26 26 chrX 112035256 112035295 -64938845 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1922 113 3 11 chrX 112035295 112035579 -64938561 - AluY SINE Alu -29 282 1 2047 78 0 46 chrX 112035579 112035713 -64938427 - AluSg SINE Alu -192 118 1 7991 187 59 30 chrX 112035713 112036004 -64938136 - L1MB7 LINE L1 -2449 3735 3454 2480 157 35 28 chrX 112036004 112036462 -64937678 + LOR1b LTR ERV1 1 461 0 7991 187 59 30 chrX 112036462 112036638 -64937502 - L1MB7 LINE L1 -2730 3454 3102 478 252 189 0 chrX 112036838 112036981 -64937159 + MER5A DNA MER1_type 9 178 -11 271 286 0 0 chrX 112037413 112037483 -64936657 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 1847 248 78 49 chrX 112037564 112038059 -64936081 - MLT1E LTR MaLR -68 558 18 2174 96 10 0 chrX 112038086 112038378 -64935762 + AluSx SINE Alu 1 295 -17 1184 28 0 7 chrX 112038464 112038607 -64935533 - L1PA3 LINE L1 -1 6154 6013 290 56 0 0 chrX 112038607 112038643 -64935497 + L1PA4 LINE L1 5917 5952 -203 28 0 0 0 chrX 112038944 112038972 -64935168 + AT_rich Low_complexity Low_complexity 1 28 0 445 31 0 31 chrX 112038972 112039037 -64935103 + (TG)n Simple_repeat Simple_repeat 2 64 0 322 331 8 31 chrX 112039124 112039254 -64934886 + L2 LINE L2 3137 3263 -9 2218 91 0 10 chrX 112039880 112040187 -64933953 - AluY SINE Alu -7 304 1 2232 84 0 19 chrX 112040767 112041075 -64933065 + AluSq SINE Alu 1 302 -11 1793 152 0 3 chrX 112041433 112041722 -64932418 + AluJo SINE Alu 6 293 -19 2291 61 0 45 chrX 112041950 112042262 -64931878 + AluY SINE Alu 1 298 -13 2221 95 0 0 chrX 112042630 112042926 -64931214 + AluSc SINE Alu 1 296 -13 1508 170 50 3 chrX 112043188 112043471 -64930669 - AluJo SINE Alu -16 296 1 1134 212 33 8 chrX 112043545 112043790 -64930350 - MIR SINE MIR 0 262 12 742 264 85 35 chrX 112043873 112043918 -64930222 + MARNA DNA Mariner 63 104 -482 1695 98 112 4 chrX 112043918 112044195 -64929945 + AluSg1 SINE Alu 1 307 -2 742 264 85 35 chrX 112044195 112044467 -64929673 + MARNA DNA Mariner 104 396 -190 521 324 77 29 chrX 112044475 112044747 -64929393 - L2 LINE L2 -1 3271 2987 2066 121 7 0 chrX 112045167 112045464 -64928676 - AluSq SINE Alu -14 299 1 1958 196 11 3 chrX 112046781 112047143 -64926997 - MLT1A1 LTR MaLR 0 365 1 1219 169 18 18 chrX 112047444 112047663 -64926477 - MER20 DNA MER1_type 0 219 1 760 154 37 25 chrX 112048038 112048200 -64925940 - L1MB3 LINE L1 -2 6181 6018 195 42 0 0 chrX 112048205 112048229 -64925911 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1447 55 0 0 chrX 112048351 112048533 -64925607 + AluY SINE Alu 126 307 -4 2225 122 56 66 chrX 112048863 112049220 -64924920 - L1MB3 LINE L1 -160 6023 5669 1829 156 0 10 chrX 112049220 112049522 -64924618 - AluJb SINE Alu -13 299 1 2225 122 56 66 chrX 112049522 112049591 -64924549 - L1MB3 LINE L1 -514 5669 5601 224 149 21 0 chrX 112049839 112049886 -64924254 + A-rich Low_complexity Low_complexity 5 52 0 1659 182 0 3 chrX 112049906 112050208 -64923932 + AluSx SINE Alu 12 312 0 2148 113 0 0 chrX 112051538 112051831 -64922309 - AluSx SINE Alu -19 293 1 2292 116 11 30 chrX 112051831 112052276 -64921864 - L1MB3 LINE L1 -562 5621 5184 523 154 0 18 chrX 112052280 112052390 -64921750 + CT-rich Low_complexity Low_complexity 1 108 0 1263 179 0 9 chrX 112052390 112052791 -64921349 - AluJb SINE Alu 0 465 67 2194 78 0 3 chrX 112052795 112053077 -64921063 + AluY SINE Alu 5 285 -26 375 311 0 9 chrX 112053182 112053269 -64920871 + L1MC4 LINE L1 6614 6701 -1341 1972 121 3 3 chrX 112053269 112053558 -64920582 - AluSq SINE Alu -24 289 1 375 311 0 9 chrX 112053558 112053576 -64920564 + L1MC4 LINE L1 6701 6718 -1324 242 188 341 12 chrX 112055164 112055249 -64918891 - MIR SINE MIR -13 249 137 421 225 101 0 chrX 112055407 112055536 -64918604 - LTR50 LTR ERVL 0 795 654 610 165 61 0 chrX 112055558 112055673 -64918467 + MER3 DNA MER1_type 48 122 -87 2474 242 39 27 chrX 112055692 112056144 -64917996 + L1MD2 LINE L1 37 501 -5895 2356 93 0 0 chrX 112056144 112056446 -64917694 + AluY SINE Alu 2 303 -8 2474 242 39 27 chrX 112056446 112056663 -64917477 + L1MD2 LINE L1 501 714 -5682 1136 221 275 84 chrX 112056664 112057134 -64917006 + L1MD2 LINE L1 862 1241 -5155 370 100 20 0 chrX 112057134 112057302 -64916838 + AluJ/FRAM SINE Alu 230 398 0 1040 208 5 9 chrX 112057303 112057519 -64916621 + L1MB3 LINE L1 5965 6179 -4 1136 221 275 84 chrX 112057519 112057553 -64916587 + L1MD2 LINE L1 1241 1267 -5129 2254 103 17 0 chrX 112057553 112057854 -64916286 - AluSg SINE Alu 0 310 5 1136 221 275 84 chrX 112057854 112057870 -64916270 + L1MD2 LINE L1 1267 1279 -5117 2465 61 3 0 chrX 112057870 112058164 -64915976 - AluY SINE Alu -16 295 1 1136 221 275 84 chrX 112058164 112058248 -64915892 + L1MD2 LINE L1 1279 1346 -5050 2386 103 0 0 chrX 112058248 112058550 -64915590 - AluSq SINE Alu -11 302 1 1136 221 275 84 chrX 112058550 112058876 -64915264 + L1MD2 LINE L1 1346 2035 -4361 372 22 0 0 chrX 112058880 112058925 -64915215 + (TG)n Simple_repeat Simple_repeat 2 46 0 654 148 0 0 chrX 112058926 112059027 -64915113 + AluJb SINE Alu 198 298 -14 603 242 84 63 chrX 112059052 112059147 -64914993 + L1MD2 LINE L1 2271 2363 -3852 1085 216 193 50 chrX 112059147 112059587 -64914553 + MLT1D LTR MaLR 1 503 -2 603 242 84 63 chrX 112059587 112059776 -64914364 + L1MD2 LINE L1 2363 2561 -3654 3952 236 49 63 chrX 112059785 112060291 -64913849 + L1MD2 LINE L1 2840 3352 -2863 2653 47 0 0 chrX 112060291 112060591 -64913549 + AluY SINE Alu 1 300 -11 3952 236 49 63 chrX 112060591 112060738 -64913402 + L1MD2 LINE L1 3352 3500 -2715 225 65 0 0 chrX 112060738 112060769 -64913371 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3952 236 49 63 chrX 112060769 112061145 -64912995 + L1MD2 LINE L1 3500 3880 -2335 1996 53 19 11 chrX 112061145 112061411 -64912729 + L1MA1 LINE L1 6035 6302 0 3952 236 49 63 chrX 112061411 112061756 -64912384 + L1MD2 LINE L1 3880 4192 -2023 1302 186 108 68 chrX 112061756 112062137 -64912003 - MSTD LTR MaLR 0 396 1 3952 236 49 63 chrX 112062137 112062380 -64911760 + L1MD2 LINE L1 4192 4437 -1778 1842 137 0 0 chrX 112062398 112062653 -64911487 + AluSx SINE Alu 4 258 -54 951 190 33 62 chrX 112062679 112062847 -64911293 + L1ME1 LINE L1 5683 5843 -323 2252 99 6 22 chrX 112062847 112063161 -64910979 + AluSc SINE Alu 1 309 0 951 190 33 62 chrX 112063161 112063234 -64910906 + L1ME1 LINE L1 5843 5917 -249 1812 149 39 0 chrX 112063276 112063557 -64910583 - AluSg SINE Alu -16 294 3 1649 171 4 18 chrX 112063589 112063870 -64910270 + AluJo SINE Alu 1 277 -35 349 200 0 0 chrX 112063885 112063955 -64910185 + L1MA10 LINE L1 6265 6334 0 286 190 52 0 chrX 112063957 112064015 -64910125 + L1MD2 LINE L1 4900 4960 -1255 980 170 6 23 chrX 112064024 112064195 -64909945 - REP3 LTR ERV -30 532 365 590 209 64 0 chrX 112064193 112064303 -64909837 - REP3 LTR ERV -420 142 26 * 809 263 80 24 chrX 112064321 112064610 -64909530 + MER68 LTR ERV1 258 562 0 629 199 43 31 chrX 112064613 112064774 -64909366 + L1MD2 LINE L1 4962 5124 -1091 2189 142 0 0 chrX 112064774 112065084 -64909056 + AluSx SINE Alu 1 310 -2 2476 80 0 6 chrX 112065084 112065436 -64908704 + AluSc SINE Alu 1 351 0 2340 97 0 13 chrX 112065455 112065765 -64908375 + AluSx SINE Alu 1 306 -6 353 213 40 75 chrX 112065765 112065929 -64908211 + L1MD2 LINE L1 5117 5276 -939 1941 155 3 0 chrX 112065934 112066225 -64907915 + AluJb SINE Alu 1 292 -20 940 180 0 0 chrX 112066225 112066408 -64907732 + AluJb SINE Alu 134 316 0 4125 195 16 99 chrX 112066408 112066770 -64907370 + L1MD2 LINE L1 5275 5665 -763 2137 121 0 0 chrX 112066770 112067078 -64907062 + AluSx SINE Alu 1 308 0 4125 195 16 99 chrX 112067078 112067132 -64907008 + L1MD2 LINE L1 5665 5722 -706 2236 98 3 7 chrX 112067132 112067429 -64906711 + AluSc SINE Alu 1 296 -13 4125 195 16 99 chrX 112067429 112067734 -64906406 + L1MD2 LINE L1 5722 6051 -377 2279 101 0 0 chrX 112067734 112068021 -64906119 + AluSx SINE Alu 1 287 -25 4125 195 16 99 chrX 112068021 112068263 -64905877 + L1MD2 LINE L1 6051 6117 -311 4737 89 13 38 chrX 112068263 112068636 -64905504 + L1MA2 LINE L1 5607 5955 -349 2117 117 3 3 chrX 112068636 112068926 -64905214 + AluSx SINE Alu 1 290 -22 4737 89 13 38 chrX 112068926 112069268 -64904872 + L1MA2 LINE L1 5955 6304 0 4125 195 16 99 chrX 112069268 112069547 -64904593 + L1MD2 LINE L1 6117 6418 -10 335 175 16 0 chrX 112069555 112069618 -64904522 + Charlie5 DNA MER1_type 2243 2306 -306 308 83 21 0 chrX 112069618 112069666 -64904474 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 2442 96 0 0 chrX 112069669 112069972 -64904168 - AluSx SINE Alu -9 303 1 325 82 0 0 chrX 112069972 112070021 -64904119 + Charlie5 DNA MER1_type 2294 2342 -270 484 229 16 41 chrX 112070030 112070152 -64903988 - LTR50 LTR ERVL -233 562 444 4036 140 103 28 chrX 112070152 112071543 -64902597 + pTR5 LTR ERV1 743 2606 0 1011 221 126 69 chrX 112071544 112071629 -64902511 - LTR50 LTR ERVL -349 446 367 2240 85 3 3 chrX 112071629 112071923 -64902217 - AluSc SINE Alu -14 295 2 1011 221 126 69 chrX 112071923 112072216 -64901924 - LTR50 LTR ERVL -428 367 39 2285 101 3 0 chrX 112072216 112072513 -64901627 + AluSx SINE Alu 1 298 -14 1011 221 126 69 chrX 112072513 112072553 -64901587 - LTR50 LTR ERVL -756 39 3 207 0 0 0 chrX 112074051 112074074 -64900066 + (TG)n Simple_repeat Simple_repeat 1 23 0 291 209 27 18 chrX 112074084 112074194 -64899946 + CT-rich Low_complexity Low_complexity 6 116 0 415 89 0 0 chrX 112074678 112074734 -64899406 - FRAM SINE Alu -71 105 50 241 333 35 14 chrX 112075092 112075233 -64898907 - MIR SINE MIR -70 192 49 744 191 0 0 chrX 112075250 112075386 -64898754 + FAM SINE Alu 1 49 0 243 242 48 16 chrX 112076562 112076624 -64897516 - L2 LINE L2 -5 3308 3245 244 274 95 0 chrX 112076673 112076768 -64897372 - MIR SINE MIR -25 237 134 498 242 0 96 chrX 112077020 112077067 -64897073 - MIR SINE MIR -119 143 93 2255 128 0 0 chrX 112077067 112077371 -64896769 + AluSx SINE Alu 1 304 -8 498 242 0 96 chrX 112077371 112077480 -64896660 - MIR SINE MIR -169 93 2 799 199 111 32 chrX 112077620 112077651 -64896489 + MIR SINE MIR 9 36 -226 4567 115 9 58 chrX 112077651 112077728 -64896412 - LTR8A LTR ERV1 0 727 648 1995 130 4 0 chrX 112077728 112078004 -64896136 + AluJo SINE Alu 1 277 -35 4567 115 9 58 chrX 112078004 112078534 -64895606 - LTR8A LTR ERV1 -79 648 162 2084 138 0 0 chrX 112078534 112078830 -64895310 + AluSx SINE Alu 1 296 -16 4567 115 9 58 chrX 112078830 112078985 -64895155 - LTR8A LTR ERV1 -565 162 1 799 199 111 32 chrX 112078985 112079169 -64894971 + MIR SINE MIR 36 241 -21 232 307 0 27 chrX 112079214 112079289 -64894851 - L2 LINE L2 -215 3057 2985 2566 64 0 13 chrX 112079293 112079604 -64894536 + AluY SINE Alu 1 307 -4 1204 104 12 29 chrX 112079604 112079777 -64894363 + AluSg/x SINE Alu 132 301 -9 2174 79 7 4 chrX 112080810 112081123 -64893017 + AluSg SINE Alu 1 314 0 4104 240 63 92 chrX 112081164 112082304 -64891836 + L1MA9 LINE L1 2686 3858 -2990 2510 70 0 0 chrX 112082304 112082605 -64891535 + AluY SINE Alu 1 301 -10 4104 240 63 92 chrX 112082605 112083542 -64890598 + L1MA9 LINE L1 3858 4821 -2027 2010 92 6 92 chrX 112083542 112083683 -64890457 + AluSc SINE Alu 1 102 -207 2623 58 0 3 chrX 112083683 112083995 -64890145 + AluY SINE Alu 1 311 0 2010 92 6 92 chrX 112083995 112084168 -64889972 + AluSc SINE Alu 102 288 -21 4104 240 63 92 chrX 112084168 112084184 -64889956 + L1MA9 LINE L1 4821 4836 -2012 2296 123 0 0 chrX 112084184 112084494 -64889646 + AluSq SINE Alu 1 310 -3 4104 240 63 92 chrX 112084494 112084846 -64889294 + L1MA9 LINE L1 4836 5197 -1651 1106 144 0 0 chrX 112084846 112085013 -64889127 + L1PA15 LINE L1 5992 6158 -7 4104 240 63 92 chrX 112085013 112085631 -64888509 + L1MA9 LINE L1 5197 5663 -1185 877 216 121 25 chrX 112085631 112085975 -64888165 + MSTD LTR MaLR 1 395 -1 3487 148 15 8 chrX 112085975 112086833 -64887307 + L1MA9 LINE L1 5662 6529 -485 448 93 4 29 chrX 112086835 112086923 -64887217 + L1MA9 LINE L1 5741 5827 -470 1507 156 5 0 chrX 112086923 112087147 -64886993 + AluJo SINE Alu 1 225 -87 1149 126 0 7 chrX 112087161 112087462 -64886678 + (GAA)n Simple_repeat Simple_repeat 1 300 0 764 203 14 44 chrX 112087462 112087668 -64886472 + L1MA9 LINE L1 5815 6017 -166 1514 148 0 130 chrX 112088501 112088693 -64885447 - AluJo SINE Alu -18 294 163 2391 88 10 0 chrX 112088693 112088987 -64885153 - AluSg SINE Alu -13 297 1 1514 148 0 130 chrX 112088987 112089132 -64885008 - AluJo SINE Alu -149 163 1 1483 196 9 41 chrX 112089375 112089545 -64884595 - AluJo SINE Alu -5 307 150 2215 124 3 0 chrX 112089545 112089851 -64884289 - AluSx SINE Alu -5 307 1 1483 196 9 41 chrX 112089851 112089997 -64884143 - AluJo SINE Alu -162 150 1 2511 79 3 0 chrX 112091300 112091603 -64882537 + AluSq SINE Alu 5 308 -5 1821 109 106 0 chrX 112091653 112091918 -64882222 - AluSx SINE Alu -19 293 1 369 0 0 0 chrX 112092761 112092802 -64881338 + (TG)n Simple_repeat Simple_repeat 2 42 0 940 122 0 27 chrX 112092971 112093119 -64881021 + L1PB4 LINE L1 5961 6104 -52 2371 114 27 103 chrX 112093121 112093568 -64880572 + MSTB LTR MaLR 1 413 -13 1294 112 73 35 chrX 112093583 112093843 -64880297 + L1MD2 LINE L1 5272 5541 -701 2085 182 52 109 chrX 112093845 112093925 -64880215 + L1MD2 LINE L1 5748 5831 -528 1956 155 20 0 chrX 112093925 112094222 -64879918 + AluJo SINE Alu 1 303 -9 2085 182 52 109 chrX 112094222 112094411 -64879729 + L1MD2 LINE L1 5831 6029 -330 2288 103 7 0 chrX 112094411 112094711 -64879429 + AluSq SINE Alu 1 302 -11 2085 182 52 109 chrX 112094711 112095089 -64879051 + L1MD2 LINE L1 6029 6359 0 1729 134 43 22 chrX 112095395 112095671 -64878469 - AluJb SINE Alu -30 282 1 1827 225 27 25 chrX 112095672 112096192 -64877948 - L1M4 LINE L1 -864 5282 4762 3292 208 52 73 chrX 112096197 112097111 -64877029 - L1PB4 LINE L1 0 6156 5225 2070 121 21 0 chrX 112097111 112097400 -64876740 + AluSx SINE Alu 1 295 -17 3292 208 52 73 chrX 112097400 112097574 -64876566 - L1PB4 LINE L1 -931 5225 5049 1879 158 3 10 chrX 112097574 112097872 -64876268 + AluJb SINE Alu 1 296 -16 3292 208 52 73 chrX 112097872 112098134 -64876006 - L1PB4 LINE L1 -1107 5049 3657 1305 141 51 0 chrX 112098134 112098368 -64875772 - L1MDb LINE L1 -4998 1411 1166 480 259 50 96 chrX 112098504 112098724 -64875416 - MIR SINE MIR -34 228 19 241 286 0 13 chrX 112099011 112099088 -64875052 + MIR SINE MIR 168 243 -19 5065 217 73 9 chrX 112099456 112100572 -64873568 - L1MDa LINE L1 -5232 1311 8 423 0 0 0 chrX 112100716 112100763 -64873377 + (TG)n Simple_repeat Simple_repeat 2 48 0 1899 301 35 43 chrX 112101589 112102689 -64871451 - HERVI LTR ERV1 -138 6511 5427 2208 89 0 40 chrX 112102689 112102992 -64871148 - AluY SINE Alu -20 291 1 1899 301 35 43 chrX 112102992 112103094 -64871046 - HERVI LTR ERV1 -1222 5427 5326 2382 334 39 34 chrX 112103135 112104587 -64869553 - HERVI LTR ERV1 -3400 4112 2878 2362 114 0 0 chrX 112104587 112104894 -64869246 - AluSc SINE Alu -2 307 1 2382 334 39 34 chrX 112104894 112105483 -64868657 - HERVI LTR ERV1 -4634 2878 2294 1516 274 61 35 chrX 112105596 112106370 -64867770 - HERVI LTR ERV1 -5702 2083 1290 285 29 0 0 chrX 112106649 112106683 -64867457 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2383 62 0 0 chrX 112106686 112106962 -64867178 - AluY SINE Alu -35 276 1 522 322 24 24 chrX 112106972 112107183 -64866957 - HERVI LTR ERV1 -6857 928 718 258 303 0 0 chrX 112107281 112107357 -64866783 - HERVI LTR ERV1 -6112 537 462 1022 184 63 79 chrX 112108321 112108677 -64865463 + MLT1D LTR MaLR 1 426 -79 2434 168 16 19 chrX 112108677 112109100 -64865040 - MSTB LTR MaLR -4 422 1 1022 184 63 79 chrX 112109100 112109178 -64864962 + MLT1D LTR MaLR 426 504 -1 961 165 64 0 chrX 112109335 112109455 -64864685 + MER3 DNA MER1_type 5 143 -66 2286 112 7 3 chrX 112109455 112109760 -64864380 - AluSx SINE Alu -6 306 1 961 165 64 0 chrX 112109760 112109827 -64864313 + MER3 DNA MER1_type 143 204 -5 2041 154 7 0 chrX 112110315 112110613 -64863527 + AluSx SINE Alu 1 300 -12 2220 87 0 0 chrX 112111020 112111295 -64862845 + AluSx SINE Alu 1 275 -37 267 31 0 0 chrX 112111297 112111329 -64862811 + (CA)n Simple_repeat Simple_repeat 1 32 0 3732 148 24 64 chrX 112111392 112111681 -64862459 + L1MB8 LINE L1 5450 5749 -429 1893 120 6 73 chrX 112111681 112111998 -64862142 + AluSc SINE Alu 1 296 -13 3732 148 24 64 chrX 112111998 112112088 -64862052 + L1MB8 LINE L1 5749 5841 -337 1753 178 7 4 chrX 112112088 112112402 -64861738 - AluJb SINE Alu 0 315 1 3732 148 24 64 chrX 112112402 112112774 -64861366 + L1MB8 LINE L1 5841 6173 -5 181 267 23 35 chrX 112112959 112113045 -64861095 + L2 LINE L2 2014 2098 -1216 598 271 49 36 chrX 112113148 112113373 -64860767 - L2 LINE L2 0 3313 3086 2357 62 0 36 chrX 112113970 112114277 -64859863 + AluY SINE Alu 1 296 -15 258 299 31 8 chrX 112115096 112115223 -64858917 - L2 LINE L2 -188 3125 2996 216 252 81 73 chrX 112115305 112115428 -64858712 - L2 LINE L2 -463 2851 2728 2594 156 2 5 chrX 112115428 112115825 -64858315 - MSTD LTR MaLR 0 396 1 945 169 102 34 chrX 112115825 112116061 -64858079 - MSTD-int LTR MaLR 0 1735 1484 2744 97 29 63 chrX 112116061 112116464 -64857676 + MSTA LTR MaLR 1 389 -39 2251 109 13 0 chrX 112116464 112116768 -64857372 - AluSc SINE Alu -1 308 1 2744 97 29 63 chrX 112116768 112116807 -64857333 + MSTA LTR MaLR 389 428 0 3567 219 23 58 chrX 112116807 112117649 -64856491 - MSTD-int LTR MaLR -247 1488 677 734 189 0 21 chrX 112118038 112118181 -64855959 - FLAM_C SINE Alu -3 140 1 676 295 15 22 chrX 112118181 112118449 -64855691 + L1ME LINE L1 5556 5821 -349 1131 183 5 5 chrX 112118642 112118862 -64855278 - AluJb SINE Alu 0 306 87 1624 147 0 100 chrX 112118931 112119251 -64854889 - AluJb SINE Alu -24 288 1 210 250 0 69 chrX 112120526 112120598 -64853542 + MIR3 SINE MIR 3 69 -139 2275 115 3 0 chrX 112121239 112121544 -64852596 + AluSx SINE Alu 2 307 -5 2002 112 0 4 chrX 112121546 112121815 -64852325 + AluY SINE Alu 1 268 -43 290 169 7 149 chrX 112121927 112121979 -64852161 - L1ME4a LINE L1 0 6121 6063 1000 112 5 48 chrX 112121979 112122167 -64851973 + L1MA6 LINE L1 6121 6300 0 290 169 7 149 chrX 112122167 112122199 -64851941 - L1ME4a LINE L1 -58 6063 6063 1949 146 7 0 chrX 112122199 112122503 -64851637 + AluSx SINE Alu 1 306 0 290 169 7 149 chrX 112122503 112122564 -64851576 - L1ME4a LINE L1 -58 6063 5995 694 255 73 0 chrX 112122589 112122781 -64851359 + MIR SINE MIR 57 262 0 1017 236 62 95 chrX 112122824 112123035 -64851105 - L1ME4a LINE L1 -305 5816 5600 2305 103 0 0 chrX 112123035 112123327 -64850813 + AluSc SINE Alu 3 294 -15 1017 236 62 95 chrX 112123327 112123386 -64850754 - L1ME4a LINE L1 -521 5600 5541 2190 115 7 13 chrX 112123386 112123690 -64850450 + AluSx SINE Alu 1 302 -10 1017 236 62 95 chrX 112123690 112123851 -64850289 - L1ME4a LINE L1 -580 5541 5398 2279 102 0 0 chrX 112123858 112124151 -64849989 - AluSx SINE Alu -19 293 1 281 267 147 22 chrX 112124319 112124503 -64849637 - L1ME3 LINE L1 0 6170 5961 477 309 53 16 chrX 112124938 112125126 -64849014 - LTR67 LTR ERVL -7 550 356 525 300 191 16 chrX 112125462 112125782 -64848358 - L2 LINE L2 -4 3309 2934 852 299 116 19 chrX 112125849 112126330 -64847810 - L2 LINE L2 -540 2774 2247 592 278 121 46 chrX 112126636 112126917 -64847223 + MER68 LTR ERV1 261 562 0 220 194 28 167 chrX 112127847 112127955 -64846185 - MIR SINE MIR -92 116 24 2076 122 3 10 chrX 112128742 112129046 -64845094 - AluSx SINE Alu -10 302 1 577 97 0 0 chrX 112130002 112130074 -64844066 + AluSq SINE Alu 115 186 -127 16610 94 15 43 chrX 112131089 112131489 -64842651 - Tigger1 DNA MER2_type 0 2418 2008 1868 122 44 0 chrX 112131489 112131924 -64842216 - AluSq SINE Alu 0 447 1 198 0 0 0 chrX 112131931 112131953 -64842187 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1912 131 45 8 chrX 112131955 112132223 -64841917 - AluSc SINE Alu -31 278 1 16610 94 15 43 chrX 112132223 112132615 -64841525 - Tigger1 DNA MER2_type -417 2001 1600 2463 119 70 7 chrX 112132615 112133018 -64841122 - MSTA LTR MaLR 0 428 1 16610 94 15 43 chrX 112133018 112133073 -64841067 - Tigger1 DNA MER2_type -818 1600 1545 2222 103 0 3 chrX 112133073 112133364 -64840776 - AluSx SINE Alu 0 312 23 16610 94 15 43 chrX 112133364 112133964 -64840176 - Tigger1 DNA MER2_type -873 1545 930 2255 101 0 7 chrX 112133964 112134261 -64839879 + AluSx SINE Alu 1 295 -17 16610 94 15 43 chrX 112134261 112134797 -64839343 - Tigger1 DNA MER2_type -1488 930 501 2662 46 0 3 chrX 112134797 112135104 -64839036 - AluY SINE Alu -5 306 1 16610 94 15 43 chrX 112135104 112135592 -64838548 - Tigger1 DNA MER2_type -1917 501 1 220 189 0 0 chrX 112136308 112136345 -64837795 + (TG)n Simple_repeat Simple_repeat 2 38 0 371 262 43 21 chrX 112137061 112137234 -64836906 + MLT1J1 LTR MaLR 66 237 -172 693 158 61 0 chrX 112137794 112137908 -64836232 + FLAM_A SINE Alu 11 131 -11 2167 125 0 16 chrX 112138068 112138379 -64835761 - AluSx SINE Alu -6 306 1 2330 76 0 36 chrX 112139509 112139811 -64834329 - AluSg1 SINE Alu -18 291 1 361 288 45 0 chrX 112140531 112140642 -64833498 + L2 LINE L2 3179 3294 -19 489 316 21 5 chrX 112140668 112140861 -64833279 - MIR SINE MIR -58 204 9 1763 38 5 0 chrX 112141062 112141272 -64832868 + L1PA5 LINE L1 5933 6143 -11 24 32 0 0 chrX 112141272 112141303 -64832837 + AT_rich Low_complexity Low_complexity 1 31 0 2328 62 3 14 chrX 112141313 112141605 -64832535 + AluY SINE Alu 1 289 -22 700 198 128 66 chrX 112141645 112141888 -64832252 - MIR SINE MIR -3 259 2 240 221 0 44 chrX 112141998 112142066 -64832074 - L2 LINE L2 -213 3059 2995 2163 133 0 10 chrX 112142076 112142384 -64831756 + AluSx SINE Alu 1 305 -7 3220 226 79 76 chrX 112142995 112144001 -64830139 + L2 LINE L2 1670 2682 -632 2624 44 0 0 chrX 112144001 112144296 -64829844 + AluY SINE Alu 1 295 -16 3220 226 79 76 chrX 112144296 112144426 -64829714 + L2 LINE L2 2682 2810 -504 608 232 11 39 chrX 112144474 112144655 -64829485 + L2 LINE L2 3138 3313 0 2065 108 45 0 chrX 112145137 112145423 -64828717 + AluSx SINE Alu 1 299 -13 186 374 33 22 chrX 112145579 112145670 -64828470 - L2 LINE L2 -189 3083 2992 1000 184 58 58 chrX 112146003 112146039 -64828101 - MER58A DNA MER1_type -2197 223 188 2057 128 0 0 chrX 112146039 112146321 -64827819 + AluJo SINE Alu 1 282 -30 231 114 0 0 chrX 112146321 112146356 -64827784 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1000 184 58 58 chrX 112146356 112146541 -64827599 - MER58A DNA MER1_type -2230 190 1 2365 94 7 0 chrX 112146910 112147207 -64826933 + AluSx SINE Alu 1 299 -13 528 16 0 0 chrX 112147216 112147277 -64826863 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 383 235 161 9 chrX 112147565 112147782 -64826358 - L1ME4a LINE L1 0 6121 5872 248 268 162 7 chrX 112147816 112147958 -64826182 - L1MC4 LINE L1 -292 7750 7587 279 271 0 0 chrX 112147968 112148053 -64826087 + L2 LINE L2 3229 3313 0 323 176 10 108 chrX 112148074 112148176 -64825964 - MIR3 SINE MIR -40 168 77 1738 77 0 96 chrX 112148199 112148460 -64825680 - AluSc SINE Alu -7 302 67 880 59 0 0 chrX 112148460 112148561 -64825579 - AluSc SINE Alu -208 101 1 1353 199 64 3 chrX 112148579 112148891 -64825249 - MER58D DNA MER1_type 0 386 56 2070 76 80 4 chrX 112149057 112149332 -64824808 - AluSx SINE Alu -16 296 1 364 234 38 124 chrX 112149550 112149720 -64824420 + HAL1 LINE L1 2316 2466 -41 1644 124 24 97 chrX 112149720 112149824 -64824316 + AluJb SINE Alu 22 132 -180 2476 94 0 0 chrX 112149824 112150131 -64824009 - AluSx SINE Alu -5 307 1 1644 124 24 97 chrX 112150131 112150324 -64823816 + AluJb SINE Alu 132 297 -15 364 234 38 124 chrX 112150324 112150362 -64823778 + HAL1 LINE L1 2466 2506 -1 3306 153 69 12 chrX 112150745 112151385 -64822755 + L1MB7 LINE L1 5421 6096 -88 1192 140 21 0 chrX 112151385 112151571 -64822569 - AluJb SINE Alu -3 309 120 2310 90 7 3 chrX 112151727 112152027 -64822113 + AluSx SINE Alu 12 312 0 2345 90 3 3 chrX 112152054 112152353 -64821787 + AluSx SINE Alu 1 299 -13 273 268 42 78 chrX 112153585 112153727 -64820413 + MIR SINE MIR 78 214 -48 1092 253 96 20 chrX 112153945 112154341 -64819799 + MER110A LTR ERV1 43 468 0 491 158 0 0 chrX 112154379 112154461 -64819679 - FLAM_A SINE Alu -12 130 49 2127 103 17 3 chrX 112154505 112154797 -64819343 - AluSx SINE Alu -16 296 1 1972 162 0 3 chrX 112155434 112155743 -64818397 + AluJb SINE Alu 1 308 -4 233 0 62 0 chrX 112155954 112155986 -64818154 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 474 207 0 0 chrX 112156037 112156119 -64818021 - AluJ/FLAM SINE Alu -229 83 2 1802 189 3 3 chrX 112156127 112156424 -64817716 - AluJb SINE Alu -15 297 1 2456 82 0 0 chrX 112156503 112156808 -64817332 + AluY SINE Alu 1 305 -6 182 247 49 25 chrX 112157035 112157116 -64817024 + MIR SINE MIR 71 153 -109 1781 127 51 48 chrX 112157174 112157466 -64816674 - AluSx SINE Alu -19 293 1 183 214 107 0 chrX 112157565 112157621 -64816519 - MIR SINE MIR -71 191 130 * 198 287 168 0 chrX 112157617 112157718 -64816422 + L3 LINE CR1 1007 1124 -453 2000 140 0 13 chrX 112157940 112158240 -64815900 + AluJb SINE Alu 1 296 -16 2490 81 3 3 chrX 112158525 112158835 -64815305 - AluSq SINE Alu -3 310 1 886 282 17 4 chrX 112159108 112159342 -64814798 - MIR SINE MIR -1 261 25 2451 84 0 6 chrX 112159456 112159767 -64814373 - AluY SINE Alu -2 309 1 213 139 0 0 chrX 112160046 112160082 -64814058 - L2 LINE L2 -18 3254 3219 708 283 98 26 chrX 112160082 112160460 -64813680 - L2 LINE L2 -1 3312 2908 636 280 59 28 chrX 112160826 112161147 -64812993 - L1ME LINE L1 -327 5794 5464 281 289 10 21 chrX 112161368 112161465 -64812675 + MIR SINE MIR 5 100 -162 242 158 0 0 chrX 112161467 112161505 -64812635 - L1M2a LINE L1 -5380 1788 1751 2305 87 44 0 chrX 112162089 112162208 -64811932 + AluY SINE Alu 1 113 -198 184 30 61 0 chrX 112162208 112162241 -64811899 + A-rich Low_complexity Low_complexity 127 161 0 2305 87 44 0 chrX 112162241 112162419 -64811721 + AluY SINE Alu 113 311 0 507 313 47 9 chrX 112162451 112162662 -64811478 + MIR SINE MIR 31 249 -13 1283 160 29 0 chrX 112162671 112162877 -64811263 + AluJb SINE Alu 85 296 -16 2147 124 0 0 chrX 112163837 112164128 -64810012 + AluSx SINE Alu 1 291 -21 349 277 87 22 chrX 112165810 112165994 -64808146 + HAL1b LINE L1 1152 1347 -1 180 0 0 0 chrX 112166167 112166187 -64807953 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 2242 97 0 37 chrX 112169449 112169770 -64804370 + AluSc SINE Alu 1 309 0 788 223 160 26 chrX 112170044 112170443 -64803697 + MLT1D LTR MaLR 4 484 -21 1949 127 52 57 chrX 112170446 112170831 -64803309 - MLT1B LTR MaLR 0 390 8 180 0 0 0 chrX 112171685 112171705 -64802435 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 314 285 81 27 chrX 112171964 112172185 -64801955 + L1MEc LINE L1 1913 2145 -4576 227 240 39 0 chrX 112172497 112172601 -64801539 + L1MEc LINE L1 2460 2567 -3973 * 5886 123 48 2 chrX 112172592 112173556 -64800584 + L1MA4A LINE L1 5289 6296 -7 1686 260 99 26 chrX 112173566 112174133 -64800007 + L1MEc LINE L1 2556 3080 -3460 2292 57 0 0 chrX 112174133 112174396 -64799744 + AluY SINE Alu 35 297 -14 1686 260 99 26 chrX 112174396 112174636 -64799504 + L1MEc LINE L1 3080 3301 -3239 447 194 204 0 chrX 112174636 112174753 -64799387 + FLAM_A SINE Alu 5 140 0 1686 260 99 26 chrX 112174753 112174908 -64799232 + L1MEc LINE L1 3301 3561 -2979 707 211 0 20 chrX 112174914 112175061 -64799079 + L1MEc LINE L1 4471 4614 -1926 961 27 0 0 chrX 112175063 112175174 -64798966 - L1PA5 LINE L1 -7 6147 6037 827 80 0 9 chrX 112175174 112175286 -64798854 + L1PA5 LINE L1 5853 5963 -191 * 4614 162 62 62 chrX 112175261 112175698 -64798442 + L1MB7 LINE L1 4607 5042 -1536 2098 139 0 19 chrX 112175698 112176014 -64798126 + AluSx SINE Alu 1 310 -2 4614 162 62 62 chrX 112176014 112176469 -64797671 + L1MB7 LINE L1 5042 5495 -1083 189 0 0 0 chrX 112176469 112176490 -64797650 + (CAA)n Simple_repeat Simple_repeat 1 21 0 4614 162 62 62 chrX 112176490 112176520 -64797620 + L1MB7 LINE L1 5495 5523 -1055 613 54 0 0 chrX 112176520 112176594 -64797546 - Alu SINE Alu -14 298 225 4614 162 62 62 chrX 112176594 112176632 -64797508 + L1MB7 LINE L1 5523 5559 -1019 2004 136 10 0 chrX 112176632 112176927 -64797213 + AluSx SINE Alu 1 298 -14 4614 162 62 62 chrX 112176927 112177425 -64796715 + L1MB7 LINE L1 5559 6055 -523 2531 54 0 3 chrX 112177425 112177720 -64796420 - AluY SINE Alu -17 294 1 4614 162 62 62 chrX 112177720 112178171 -64795969 + L1MB7 LINE L1 6055 6578 0 288 219 0 14 chrX 112178169 112178242 -64795898 + L1ME3A LINE L1 5894 5965 -205 * 373 265 33 57 chrX 112178293 112178504 -64795636 + L1ME3A LINE L1 5962 6167 -3 321 277 109 50 chrX 112178733 112178918 -64795222 + MIR SINE MIR 11 214 -48 854 183 18 6 chrX 112178918 112179082 -64795058 - FAM SINE Alu -9 166 1 321 277 109 50 chrX 112179082 112179134 -64795006 + MIR SINE MIR 214 262 0 1921 135 0 4 chrX 112179246 112179520 -64794620 - AluSx SINE Alu -22 290 18 286 315 9 9 chrX 112179532 112179640 -64794500 - MIR SINE MIR -135 127 20 423 289 7 20 chrX 112180493 112180642 -64793498 + MIR SINE MIR 90 236 -26 415 214 12 0 chrX 112180662 112180746 -64793394 + L2 LINE L2 3227 3311 -2 1938 163 3 0 chrX 112180833 112181134 -64793006 + AluJo SINE Alu 1 302 -10 340 239 34 51 chrX 112182018 112182135 -64792005 + L2 LINE L2 3158 3272 0 190 333 0 0 chrX 112182176 112182233 -64791907 + L3 LINE CR1 1230 1286 -291 2204 123 0 0 chrX 112182247 112182547 -64791593 - AluSx SINE Alu -12 300 1 949 237 39 27 chrX 112182552 112182891 -64791249 - L1MD3 LINE L1 0 8042 7712 431 324 38 33 chrX 112182908 112183118 -64791022 + L3 LINE CR1 1293 1503 -74 406 234 38 44 chrX 112183354 112183512 -64790628 - MIR SINE MIR 0 262 106 1773 177 3 20 chrX 112183614 112183914 -64790226 + AluJo SINE Alu 1 295 -17 281 340 0 11 chrX 112184299 112184393 -64789747 + L2 LINE L2 2986 3078 -194 357 241 142 7 chrX 112185960 112186101 -64788039 - MER117 DNA MER1_type -37 160 1 614 122 52 61 chrX 112186141 112186256 -64787884 + FLAM_A SINE Alu 18 131 -11 1442 133 13 110 chrX 112186400 112186524 -64787616 - L1M3 LINE L1 -457 5714 5580 2619 70 0 0 chrX 112186524 112186837 -64787303 - AluSp SINE Alu 0 313 1 1442 133 13 110 chrX 112186837 112187021 -64787119 - L1M3 LINE L1 -591 5580 5436 * 1966 185 10 13 chrX 112187015 112187398 -64786742 - L1MD1 LINE L1 -416 5826 5445 3474 117 0 2 chrX 112187398 112187896 -64786244 - LOR1a LTR ERV1 0 497 1 375 23 0 0 chrX 112188267 112188311 -64785829 + (TG)n Simple_repeat Simple_repeat 1 44 0 1907 86 0 0 chrX 112188450 112188683 -64785457 + AluSq SINE Alu 5 237 -76 1598 173 0 4 chrX 112388683 112388938 -64585202 + AluJb SINE Alu 59 312 0 342 231 0 11 chrX 112389108 112389199 -64584941 + L1MA2 LINE L1 6213 6302 -2 492 318 127 82 chrX 112390624 112391436 -64582704 + L2 LINE L2 2444 3311 -2 200 206 174 130 chrX 112392309 112392347 -64581793 - MER5A DNA MER1_type -85 104 69 2053 123 3 10 chrX 112392347 112392649 -64581491 - AluSx SINE Alu -12 300 1 200 206 174 130 chrX 112392649 112392702 -64581438 - MER5A DNA MER1_type -120 69 9 1342 222 31 1 chrX 112392718 112393017 -64581123 - MER58B DNA MER1_type 0 341 36 347 289 132 13 chrX 112394554 112394706 -64579434 - MIR SINE MIR -6 256 87 1958 118 52 7 chrX 112395376 112395665 -64578475 - AluSx SINE Alu -10 302 1 984 172 108 1 chrX 112396508 112396715 -64577425 + MSTB1 LTR MaLR 113 344 -88 2612 149 16 2 chrX 112396739 112397162 -64576978 + MSTB1 LTR MaLR 4 432 0 1388 141 4 50 chrX 112397647 112397888 -64576252 + AluJb SINE Alu 83 312 0 199 279 0 58 chrX 112399140 112399226 -64574914 + L2 LINE L2 3222 3302 -11 2049 82 0 72 chrX 112399725 112400031 -64574109 - AluSx SINE Alu -28 284 1 439 276 25 2 chrX 112401001 112401132 -64573008 + L1ME LINE L1 5491 5610 -552 27 0 0 0 chrX 112401138 112401165 -64572975 + AT_rich Low_complexity Low_complexity 1 27 0 660 290 33 33 chrX 112401880 112402125 -64572015 - MIR SINE MIR -1 261 17 2208 74 10 10 chrX 112402496 112402794 -64571346 + AluSc SINE Alu 1 298 -11 336 277 22 51 chrX 112402867 112403004 -64571136 + MIR SINE MIR 74 206 -56 222 254 0 45 chrX 112403454 112403521 -64570619 + L2 LINE L2 3209 3272 0 31 44 0 0 chrX 112404268 112404313 -64569827 + AT_rich Low_complexity Low_complexity 1 45 0 252 226 0 0 chrX 112405262 112405315 -64568825 + MER4-int LTR ERV1 1111 1163 -5435 231 114 0 0 chrX 112405389 112405424 -64568716 + (TA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chrX 112405423 112405448 -64568692 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1788 167 0 7 chrX 112406011 112406305 -64567835 + AluJb SINE Alu 1 292 -20 387 242 81 8 chrX 112406478 112406602 -64567538 - MER94 DNA DNA 0 134 2 440 295 25 0 chrX 112406974 112407096 -64567044 + MIR3 SINE MIR 36 160 -48 308 43 22 0 chrX 112409981 112410027 -64564113 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 4018 19 4 0 chrX 112410029 112410494 -64563646 - L1PA2 LINE L1 -11 6144 5678 278 289 141 55 chrX 112412144 112412272 -64561868 - L2 LINE L2 0 3272 3134 818 143 11 28 chrX 112412364 112412546 -64561594 + CT-rich Low_complexity Low_complexity 2 180 0 252 0 0 0 chrX 112412546 112412574 -64561566 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 427 197 0 0 chrX 112412605 112412681 -64561459 - AluJb SINE Alu -53 259 184 4065 83 5 7 chrX 112413225 112413782 -64560358 - L1PA10 LINE L1 -4 6164 5609 212 171 0 0 chrX 112414106 112414147 -64559993 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 325 47 0 0 chrX 112414697 112414740 -64559400 + MADE1 DNA Mariner 1 43 -37 1870 113 18 25 chrX 112415550 112415833 -64558307 + AluSx SINE Alu 1 281 -31 324 103 0 0 chrX 112415836 112415894 -64558246 + (TA)n Simple_repeat Simple_repeat 2 59 0 1407 143 80 5 chrX 112417974 112418354 -64555786 - L1M2 LINE L1 -829 5462 4947 693 107 0 18 chrX 112418359 112418471 -64555669 - L1M LINE L1 -862 5429 5320 2257 129 10 33 chrX 112418474 112418870 -64555270 + L1MA7 LINE L1 5905 6291 0 461 354 48 70 chrX 112419015 112419371 -64554769 - L2 LINE L2 -20 3252 2905 1149 220 63 63 chrX 112419387 112419875 -64554265 - MER39 LTR ERV1 0 676 1 1886 159 3 0 chrX 112419933 112420222 -64553918 + AluJb SINE Alu 3 292 -20 24 0 0 0 chrX 112421065 112421089 -64553051 + AT_rich Low_complexity Low_complexity 1 24 0 2200 90 10 7 chrX 112421099 112421400 -64552740 - AluSx SINE Alu -10 302 1 449 304 87 39 chrX 112421937 112422249 -64551891 + L2 LINE L2 2916 3242 -71 217 240 67 40 chrX 112422344 112422419 -64551721 + L3b LINE CR1 1107 1183 -400 338 291 120 29 chrX 112422460 112422635 -64551505 - MIR SINE MIR 0 262 72 23 33 0 0 chrX 112423779 112423809 -64550331 + AT_rich Low_complexity Low_complexity 1 30 0 318 143 0 0 chrX 112424125 112424174 -64549966 + L2 LINE L2 3265 3313 0 28 29 0 0 chrX 112424452 112424487 -64549653 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chrX 112424730 112424762 -64549378 + AT_rich Low_complexity Low_complexity 1 32 0 206 396 0 10 chrX 112425177 112425273 -64548867 + L2 LINE L2 3173 3267 -5 277 263 105 0 chrX 112425471 112425547 -64548593 + MIR SINE MIR 71 154 -108 22 56 0 0 chrX 112425618 112425654 -64548486 + AT_rich Low_complexity Low_complexity 1 36 0 292 164 14 14 chrX 112425739 112425812 -64548328 + (TA)n Simple_repeat Simple_repeat 1 73 0 416 282 53 117 chrX 112426076 112426342 -64547798 - L2 LINE L2 -1 3271 3023 21 0 0 0 chrX 112427851 112427872 -64546268 + AT_rich Low_complexity Low_complexity 1 21 0 459 50 0 0 chrX 112429200 112429260 -64544880 - L1PA3 LINE L1 -11 6144 6085 21 36 0 0 chrX 112429605 112429633 -64544507 + AT_rich Low_complexity Low_complexity 1 28 0 2100 205 37 120 chrX 112430136 112430409 -64543731 + L1MC4a LINE L1 6959 7253 -555 2710 85 11 11 chrX 112430409 112430784 -64543356 - THE1C LTR MaLR 0 375 1 2100 205 37 120 chrX 112430784 112431437 -64542703 + L1MC4a LINE L1 7253 7808 0 1321 57 69 0 chrX 112432662 112432837 -64541303 + AluY SINE Alu 1 187 -124 1117 97 0 0 chrX 112433017 112433162 -64540978 - AluSq/x SINE Alu -167 145 1 30 27 0 0 chrX 112433740 112433777 -64540363 + AT_rich Low_complexity Low_complexity 1 37 0 27 73 0 0 chrX 112434836 112434891 -64539249 + AT_rich Low_complexity Low_complexity 1 55 0 4336 106 9 3 chrX 112435698 112436332 -64537808 - L1PA11 LINE L1 -2 6172 5535 1129 201 180 21 chrX 112436465 112436893 -64537247 - LTR54B LTR ERV1 -2 496 1 2738 118 14 132 chrX 112436910 112437402 -64536738 - Tigger2 DNA MER2_type 0 2718 1 24 32 0 0 chrX 112438251 112438282 -64535858 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chrX 112438364 112438393 -64535747 + AT_rich Low_complexity Low_complexity 1 29 0 7343 32 15 0 chrX 112440930 112442352 -64531788 + L1PA4 LINE L1 4718 6152 -3 560 271 87 37 chrX 112442746 112442964 -64531176 + L2 LINE L2 3077 3305 -8 213 39 0 0 chrX 112442966 112442992 -64531148 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 253 381 25 25 chrX 112442992 112443110 -64531030 - MIR SINE MIR -73 135 18 6391 87 19 1 chrX 112443527 112444614 -64529526 + L1PA10 LINE L1 5072 6167 -1 23 0 0 0 chrX 112444894 112444917 -64529223 + AT_rich Low_complexity Low_complexity 1 23 0 252 59 0 0 chrX 112444938 112444972 -64529168 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 326 23 12 chrX 112444977 112445063 -64529077 + L2 LINE L2 3136 3222 -50 216 0 0 0 chrX 112445076 112445100 -64529040 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 477 200 0 0 chrX 112445705 112445800 -64528340 - AluSg/x SINE Alu -2 307 213 390 187 24 157 chrX 112446819 112446985 -64527155 - MIR SINE MIR 0 262 119 1753 184 0 3 chrX 112447784 112448072 -64526068 + AluJb SINE Alu 3 289 -23 2115 114 3 7 chrX 112448169 112448475 -64525665 + AluSq SINE Alu 1 305 -8 2583 44 0 13 chrX 112448750 112449065 -64525075 - AluY SINE Alu 0 311 1 221 18 55 73 chrX 112449817 112449872 -64524268 + (CAAAA)n Simple_repeat Simple_repeat 2 55 0 311 205 26 0 chrX 112449991 112450069 -64524071 + MER116 DNA Mariner 1 80 0 256 329 73 58 chrX 112450112 112450249 -64523891 + MIR SINE MIR 3 141 -121 1227 265 46 81 chrX 112450313 112451207 -64522933 - L1ME LINE L1 -422 5723 4859 400 279 107 75 chrX 112451232 112451645 -64522495 - L1ME LINE L1 -2291 3838 3413 1595 204 99 30 chrX 112451645 112451812 -64522328 + MLT1C LTR MaLR 1 155 -312 2336 35 32 0 chrX 112451812 112452094 -64522046 + AluY SINE Alu 1 291 -20 1595 204 99 30 chrX 112452094 112452358 -64521782 + MLT1C LTR MaLR 155 462 -5 1748 286 78 21 chrX 112452363 112453527 -64520613 - L1ME LINE L1 -2712 3417 2187 190 130 0 43 chrX 112453527 112453573 -64520567 + (TTTTA)n Simple_repeat Simple_repeat 3 46 0 263 231 110 23 chrX 112453573 112453746 -64520394 - L1ME LINE L1 -3934 2195 2008 22 0 0 0 chrX 112453812 112453834 -64520306 + AT_rich Low_complexity Low_complexity 1 22 0 1696 177 3 7 chrX 112454004 112454292 -64519848 - AluJo SINE Alu -21 291 5 732 308 86 16 chrX 112454340 112454888 -64519252 - L1ME LINE L1 -4586 1724 1139 1877 170 0 0 chrX 112454937 112455225 -64518915 + AluJo SINE Alu 5 292 -20 1430 207 0 32 chrX 112455244 112455529 -64518611 - AluJo SINE Alu -36 276 1 297 208 72 16 chrX 112455529 112455654 -64518486 - L1ME LINE L1 -5020 1099 968 1377 148 5 0 chrX 112456479 112456688 -64517452 + MER2 DNA MER2_type 1 210 -135 252 184 0 0 chrX 112456793 112456842 -64517298 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 250 29 19 chrX 112457157 112457261 -64516879 + HSMAR1 DNA Mariner 1182 1286 -1 2075 97 0 0 chrX 112458898 112459165 -64514975 + AluSx SINE Alu 22 288 -24 23 0 0 0 chrX 112459277 112459300 -64514840 + AT_rich Low_complexity Low_complexity 1 23 0 252 274 16 16 chrX 112459347 112459409 -64514731 + L2 LINE L2 3241 3302 -11 212 346 50 20 chrX 112462592 112462693 -64511447 + L2 LINE L2 3154 3257 -15 405 318 71 18 chrX 112463667 112463837 -64510303 - MIR3 SINE MIR -7 201 23 1585 286 72 46 chrX 112464539 112465347 -64508793 + L1M4 LINE L1 40 868 -5674 2919 218 48 60 chrX 112465414 112465637 -64508503 + L1M4 LINE L1 872 1096 -5729 2157 138 0 0 chrX 112465637 112465948 -64508192 + AluSx SINE Alu 2 312 0 2919 218 48 60 chrX 112465948 112467133 -64507007 + L1M4 LINE L1 1096 2483 -4342 674 151 8 0 chrX 112467150 112467276 -64506864 + L1MB7 LINE L1 6039 6165 -19 242 111 0 0 chrX 112467297 112467333 -64506807 + L1M4 LINE L1 2468 2503 -4322 23 33 0 0 chrX 112467336 112467366 -64506774 + AT_rich Low_complexity Low_complexity 1 30 0 225 94 0 0 chrX 112468201 112468233 -64505907 + (TTATA)n Simple_repeat Simple_repeat 4 35 0 236 154 48 48 chrX 112468965 112469069 -64505071 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 265 325 116 23 chrX 112470557 112470814 -64503326 - L3 LINE CR1 -5 1572 1218 207 0 0 0 chrX 112471119 112471142 -64502998 + (TTG)n Simple_repeat Simple_repeat 2 24 0 295 189 342 9 chrX 112471284 112471395 -64502745 + MIR SINE MIR 114 261 -1 583 254 23 0 chrX 112471565 112471868 -64502272 + FLAM_C SINE Alu 1 306 0 259 235 37 49 chrX 112472081 112472162 -64501978 + MIR SINE MIR 183 262 0 2355 90 3 6 chrX 112472305 112472617 -64501523 - AluSp SINE Alu -2 311 1 197 192 0 19 chrX 112474682 112474734 -64499406 + (TA)n Simple_repeat Simple_repeat 2 52 0 246 303 0 0 chrX 112474735 112474824 -64499316 + L1MC4 LINE L1 6614 6702 -1340 * 256 300 0 0 chrX 112474775 112474865 -64499275 - L1MC4 LINE L1 -1339 6703 6614 256 300 0 0 chrX 112474865 112474955 -64499185 - L1MC4 LINE L1 -1339 6703 6614 183 42 0 0 chrX 112474975 112474999 -64499141 + (GA)n Simple_repeat Simple_repeat 2 25 0 521 336 11 48 chrX 112475081 112475349 -64498791 + MIR SINE MIR 5 262 0 1878 150 0 19 chrX 112476031 112476338 -64497802 + AluJo SINE Alu 1 301 -11 227 117 133 50 chrX 112476857 112476917 -64497223 + L2 LINE L2 3183 3247 -66 1558 181 14 10 chrX 112478281 112478574 -64495566 - AluJo SINE Alu -18 294 1 243 61 0 0 chrX 112478862 112478895 -64495245 + (TG)n Simple_repeat Simple_repeat 2 34 0 199 130 37 0 chrX 112479387 112479441 -64494699 + T-rich Low_complexity Low_complexity 2 57 0 244 281 146 0 chrX 112479803 112479892 -64494248 + L1MC5 LINE L1 6699 6800 -1161 4391 148 35 8 chrX 112479926 112480718 -64493422 - L1MD1 LINE L1 0 6636 5823 1202 207 9 4 chrX 112480738 112480970 -64493170 - AluJo SINE Alu -24 288 56 3309 235 76 23 chrX 112480995 112481164 -64492976 - L1MD1 LINE L1 -779 5761 5602 1456 222 72 60 chrX 112481164 112481596 -64492544 + MLT1D LTR MaLR 1 441 -64 2337 93 0 0 chrX 112481596 112481896 -64492244 - AluSq SINE Alu -13 300 1 1456 222 72 60 chrX 112481896 112481962 -64492178 + MLT1D LTR MaLR 441 505 0 3309 235 76 23 chrX 112481962 112482626 -64491514 - L1MD1 LINE L1 -938 5602 4908 2450 113 26 5 chrX 112482626 112483006 -64491134 + MLT1B LTR MaLR 1 388 -2 3309 235 76 23 chrX 112483006 112483410 -64490730 - L1MD1 LINE L1 -1632 4908 4527 447 83 0 0 chrX 112483429 112483489 -64490651 - MLT1D LTR MaLR 0 505 446 320 264 0 0 chrX 112483489 112483561 -64490579 - L1MD1 LINE L1 -2018 4522 4451 787 239 43 43 chrX 112483662 112483917 -64490223 - L1MD1 LINE L1 -6259 281 27 259 257 43 71 chrX 112485454 112485524 -64488616 + MIR SINE MIR 37 104 -158 359 229 105 19 chrX 112485541 112485646 -64488494 + L2 LINE L2 3198 3311 -2 418 132 13 0 chrX 112485698 112485774 -64488366 + FLAM_A SINE Alu 63 139 -3 752 286 41 20 chrX 112486085 112486330 -64487810 + MIR SINE MIR 13 262 0 233 29 29 0 chrX 112487121 112487155 -64486985 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 267 308 31 0 chrX 112487191 112487256 -64486884 + L2 LINE L2 2988 3054 -218 1992 133 6 22 chrX 112487370 112487686 -64486454 - AluJb SINE Alu 0 312 2 3694 220 56 11 chrX 112487726 112488808 -64485332 - L1MDb LINE L1 -748 5332 4202 1380 219 128 111 chrX 112488811 112489336 -64484804 - MLT1E LTR MaLR -4 589 5 2142 229 67 61 chrX 112489338 112489664 -64484476 - L1MDb LINE L1 -1871 4209 3887 1657 164 0 36 chrX 112489664 112489840 -64484300 - AluJb SINE Alu -14 298 136 2385 74 0 0 chrX 112489840 112490151 -64483989 - AluY SINE Alu 0 311 1 1657 164 0 36 chrX 112490151 112490278 -64483862 - AluJb SINE Alu -176 136 6 2142 229 67 61 chrX 112490278 112490759 -64483381 - L1MDb LINE L1 -2193 3887 3397 * 6750 110 36 9 chrX 112490743 112491834 -64482306 - L1MA2 LINE L1 0 6304 5193 1140 254 64 33 chrX 112491894 112492103 -64482037 - L1MDb LINE L1 -2718 3362 3161 2332 70 7 0 chrX 112492103 112492401 -64481739 + AluY SINE Alu 1 300 -11 1140 254 64 33 chrX 112492401 112492647 -64481493 - L1MDb LINE L1 -2919 3161 2893 597 149 15 45 chrX 112492648 112492782 -64481358 - L1MA9 LINE L1 -6 6306 6177 768 228 43 5 chrX 112492786 112493016 -64481124 - L1ME2 LINE L1 -149 6015 5809 1041 243 54 42 chrX 112493026 112493443 -64480697 - L1MDb LINE L1 -4840 1240 813 316 8 8 0 chrX 112493499 112493541 -64480599 - L1P4 LINE L1 -583 5578 5535 * 5168 10 0 0 chrX 112493540 112494126 -64480014 + L1HS LINE L1 5570 6155 0 469 299 71 58 chrX 112494145 112494526 -64479614 - L1MDb LINE L1 -5312 758 373 327 340 76 50 chrX 112494538 112494800 -64479340 - L1MDb LINE L1 -5617 453 185 280 333 42 21 chrX 112494971 112495160 -64478980 - L1MDb LINE L1 -5876 194 2 1164 245 105 112 chrX 112495173 112495331 -64478809 - L1MC4a LINE L1 -897 6911 6753 2214 88 9 31 chrX 112495331 112495648 -64478492 - AluSg SINE Alu 0 310 1 1164 245 105 112 chrX 112495648 112495822 -64478318 - L1MC4a LINE L1 -1055 6753 6579 186 43 0 0 chrX 112495822 112495845 -64478295 + (CTAG)n Simple_repeat Simple_repeat 1 23 0 1164 245 105 112 chrX 112495845 112496234 -64477906 - L1MC4a LINE L1 -1229 6579 6194 * 1280 279 42 15 chrX 112496222 112496702 -64477438 - L1MC4a LINE L1 -1959 5849 5357 237 212 30 0 chrX 112496702 112496768 -64477372 + (TA)n Simple_repeat Simple_repeat 2 69 0 1690 152 7 11 chrX 112496780 112497063 -64477077 - AluJb SINE Alu -30 282 1 21 0 0 0 chrX 112497063 112497084 -64477056 + AT_rich Low_complexity Low_complexity 1 21 0 270 253 41 20 chrX 112497087 112497221 -64476919 - L1MC4a LINE L1 -801 5345 5209 207 100 0 0 chrX 112497251 112497281 -64476859 + (TTA)n Simple_repeat Simple_repeat 3 32 0 546 303 71 30 chrX 112497416 112497852 -64476288 - L1MC4a LINE L1 -1809 4337 3884 42 77 0 0 chrX 112497852 112497943 -64476197 + AT_rich Low_complexity Low_complexity 1 91 0 2064 68 4 7 chrX 112498082 112498360 -64475780 - L1PA8 LINE L1 -14 6158 5882 1599 156 61 45 chrX 112498455 112498834 -64475306 - L1MA9 LINE L1 -3 6309 5925 533 298 105 57 chrX 112498838 112499369 -64474771 - L1MC4a LINE L1 -2381 3765 3261 2016 125 26 3 chrX 112499369 112499672 -64474468 + AluSx SINE Alu 3 312 0 533 298 105 57 chrX 112499672 112500553 -64473587 - L1MC4a LINE L1 -2885 3261 2269 2305 82 7 3 chrX 112500751 112501055 -64473085 - AluY SINE Alu -6 305 1 1733 143 0 41 chrX 112501522 112501869 -64472271 - AluSx SINE Alu 0 335 1 25 0 0 0 chrX 112501996 112502021 -64472119 + AT_rich Low_complexity Low_complexity 1 25 0 709 228 66 48 chrX 112502029 112502257 -64471883 - L1ME1 LINE L1 -21 6145 5914 201 94 0 0 chrX 112502288 112502320 -64471820 + (T)n Simple_repeat Simple_repeat 1 32 0 415 323 82 78 chrX 112502325 112502999 -64471141 - HAL1b LINE L1 -931 1462 22 2076 103 10 13 chrX 112503458 112503759 -64470381 - AluSx SINE Alu -12 300 1 264 149 0 0 chrX 112505682 112505729 -64468411 + (CAT)n Simple_repeat Simple_repeat 2 48 0 803 250 30 56 chrX 112505771 112506039 -64468101 - MIR SINE MIR 0 262 2 406 262 172 0 chrX 112507457 112507602 -64466538 + MIR SINE MIR 85 254 -8 22 80 0 0 chrX 112508682 112508732 -64465408 + AT_rich Low_complexity Low_complexity 1 50 0 42151 37 22 1 chrX 112510353 112516369 -64457771 + L1PA2 LINE L1 12 6155 0 448 29 50 65 chrX 112517824 112517963 -64456177 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 23 0 0 0 chrX 112517963 112517986 -64456154 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chrX 112518613 112518643 -64455497 + AT_rich Low_complexity Low_complexity 1 30 0 894 167 28 70 chrX 112518660 112518875 -64455265 + AluJb SINE Alu 107 312 0 1789 158 21 3 chrX 112519514 112519799 -64454341 + AluJb SINE Alu 7 296 -16 808 246 35 26 chrX 112520897 112521125 -64453015 - L2 LINE L2 -1 3312 3083 433 276 129 18 chrX 112521981 112522151 -64451989 + MIR3 SINE MIR 9 197 -11 225 178 0 0 chrX 112522988 112523033 -64451107 + (TG)n Simple_repeat Simple_repeat 2 46 0 353 224 159 54 chrX 112523505 112523782 -64450358 + L1MC5 LINE L1 7611 7916 -45 202 291 0 0 chrX 112525024 112525079 -64449061 - L2 LINE L2 -10 3262 3208 409 280 51 8 chrX 112525262 112525380 -64448760 - L2 LINE L2 -1 3312 3190 694 180 0 0 chrX 112526607 112526729 -64447411 - FLAM_A SINE Alu -15 127 6 326 294 32 40 chrX 112526734 112526860 -64447280 - MIR3 SINE MIR -54 154 30 191 261 0 11 chrX 112527081 112527173 -64446967 + GA-rich Low_complexity Low_complexity 4 94 0 228 292 14 28 chrX 112527604 112527748 -64446392 + L1M4 LINE L1 2328 2469 -3677 1403 200 0 25 chrX 112528081 112528361 -64445779 - AluJo SINE Alu -39 273 1 230 296 37 28 chrX 112528486 112528604 -64445536 + MIR SINE MIR 20 137 -71 187 245 38 19 chrX 112529056 112529109 -64445031 - L2 LINE L2 -869 2445 2392 207 0 0 0 chrX 112529453 112529476 -64444664 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 669 195 0 8 chrX 112529483 112529611 -64444529 - FRAM SINE Alu -55 121 1 43904 37 2 1 chrX 112530158 112536301 -64437839 - L1PA3 LINE L1 -3 6152 9 21 0 0 0 chrX 112536622 112536643 -64437497 + AT_rich Low_complexity Low_complexity 1 21 0 494 340 140 0 chrX 112537313 112537584 -64436556 - L2 LINE L2 0 3313 3005 22 35 0 0 chrX 112538277 112538306 -64435834 + AT_rich Low_complexity Low_complexity 1 29 0 336 64 0 0 chrX 112538389 112538436 -64435704 + (TG)n Simple_repeat Simple_repeat 2 48 0 2077 234 50 7 chrX 112538556 112539085 -64435055 + MLT1E2 LTR MaLR 92 625 -1 22 35 0 0 chrX 112541191 112541220 -64432920 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chrX 112541282 112541317 -64432823 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chrX 112541930 112541953 -64432187 + AT_rich Low_complexity Low_complexity 1 23 0 1978 105 3 21 chrX 112542070 112542355 -64431785 + AluSq SINE Alu 3 282 -31 1137 189 18 9 chrX 112543092 112543309 -64430831 + MER20 DNA MER1_type 1 219 0 338 193 24 36 chrX 112543874 112543957 -64430183 + L2 LINE L2 3227 3308 -5 273 224 0 0 chrX 112545156 112545214 -64428926 + L2 LINE L2 3255 3312 -1 251 270 87 52 chrX 112545684 112545799 -64428341 + MIR SINE MIR 73 191 -71 5311 108 16 4 chrX 112547167 112547584 -64426556 + L1PB1 LINE L1 5366 5798 -353 285 98 0 0 chrX 112547584 112547625 -64426515 + (TA)n Simple_repeat Simple_repeat 1 41 0 5311 108 16 4 chrX 112547625 112547979 -64426161 + L1PB1 LINE L1 5798 6146 -5 2379 103 0 0 chrX 112548473 112548784 -64425356 - AluSx SINE Alu -1 311 1 21 95 0 0 chrX 112549252 112549315 -64424825 + AT_rich Low_complexity Low_complexity 1 63 0 25 0 0 0 chrX 112549877 112549902 -64424238 + AT_rich Low_complexity Low_complexity 1 25 0 42 20 0 0 chrX 112550104 112550153 -64423987 + AT_rich Low_complexity Low_complexity 1 49 0 191 316 158 0 chrX 112551039 112551115 -64423025 + MIR3 SINE MIR 119 206 -2 27 29 0 0 chrX 112551673 112551707 -64422433 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chrX 112552636 112552671 -64421469 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chrX 112552745 112552786 -64421354 + AT_rich Low_complexity Low_complexity 1 41 0 1943 118 22 50 chrX 112552999 112553320 -64420820 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 112554464 112554485 -64419655 + AT_rich Low_complexity Low_complexity 1 21 0 258 287 191 0 chrX 112555323 112555417 -64418723 + MIR SINE MIR 64 175 -87 442 319 67 19 chrX 112555490 112555700 -64418440 + L3b LINE CR1 1202 1421 -162 22 35 0 0 chrX 112555934 112555963 -64418177 + AT_rich Low_complexity Low_complexity 1 29 0 2918 176 15 6 chrX 112556002 112556537 -64417603 + MER34 LTR ERV1 1 540 -2 222 287 250 19 chrX 112556979 112557087 -64417053 + MIR3 SINE MIR 5 137 -71 1844 160 0 0 chrX 112557243 112557525 -64416615 + AluSx SINE Alu 1 282 -30 36 0 0 0 chrX 112557525 112557561 -64416579 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chrX 112558517 112558547 -64415593 + (TG)n Simple_repeat Simple_repeat 2 31 0 251 356 73 35 chrX 112559472 112559815 -64414325 + L2 LINE L2 2584 2939 -375 2336 109 0 0 chrX 112560648 112560960 -64413180 + AluSq SINE Alu 1 312 -1 308 335 82 18 chrX 112561970 112562140 -64412000 + MIR SINE MIR 23 203 -59 22 35 0 0 chrX 112562876 112562905 -64411235 + AT_rich Low_complexity Low_complexity 1 29 0 244 262 155 29 chrX 112564203 112564306 -64409834 - MIR SINE MIR -72 190 75 952 185 11 26 chrX 112564418 112564607 -64409533 - AluJo SINE Alu -20 292 107 22 0 0 0 chrX 112565724 112565746 -64408394 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chrX 112566080 112566116 -64408024 + AT_rich Low_complexity Low_complexity 1 36 0 2230 106 3 7 chrX 112566402 112566704 -64407436 - AluSq SINE Alu -12 301 1 970 119 7 14 chrX 112566716 112566859 -64407281 - AluSq/x SINE Alu -169 143 2 530 335 37 0 chrX 112566860 112567051 -64407089 + MIR SINE MIR 64 261 -1 1054 87 0 0 chrX 112567121 112567259 -64406881 - AluSc SINE Alu -30 279 142 200 98 73 0 chrX 112567894 112567935 -64406205 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 2771 175 19 94 chrX 112768132 112768576 -64205564 - L1MB1 LINE L1 0 6168 5791 2279 92 3 3 chrX 112768576 112768879 -64205261 - AluSp SINE Alu -10 303 1 2771 175 19 94 chrX 112768879 112769114 -64205026 - L1MB1 LINE L1 -377 5791 5540 3652 184 13 46 chrX 112769214 112770137 -64204003 + L1MB1 LINE L1 4548 5447 -721 1590 179 40 20 chrX 112770127 112770207 -64203933 + L1MB1 LINE L1 5703 5780 -388 * 203 88 29 0 chrX 112770207 112770241 -64203899 + (TA)n Simple_repeat Simple_repeat 2 36 0 1590 179 40 20 chrX 112770241 112770506 -64203634 + L1MB1 LINE L1 5780 6055 -113 6084 205 27 23 chrX 112770606 112772022 -64202118 - L1MB1 LINE L1 -1585 4561 3141 844 165 50 25 chrX 112773256 112773413 -64200727 - L1MA8 LINE L1 -22 6269 6117 198 0 0 0 chrX 112773413 112773435 -64200705 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4986 18 0 0 chrX 112773435 112774004 -64200136 - L1PA3 LINE L1 -18 6137 5569 844 165 50 25 chrX 112774004 112774045 -64200095 - L1MA8 LINE L1 -173 6118 6065 2243 141 3 18 chrX 112774046 112774387 -64199753 + MER1B DNA MER1_type 1 336 -3 2451 137 34 27 chrX 112774388 112774834 -64199306 - L1MA6 LINE L1 -218 6082 5634 228 327 93 9 chrX 112775204 112775311 -64198829 - MIR SINE MIR -71 137 22 314 137 0 0 chrX 112775368 112775419 -64198721 - MADE1 DNA Mariner -2 78 28 260 109 0 91 chrX 112775419 112775474 -64198666 - MADE1 DNA Mariner -30 50 1 589 144 14 0 chrX 112776462 112776608 -64197532 + (CA)n Simple_repeat Simple_repeat 2 149 0 871 48 44 17 chrX 112776864 112777269 -64196871 + (TA)n Simple_repeat Simple_repeat 1 415 0 530 273 57 16 chrX 112777281 112777475 -64196665 + MIR SINE MIR 61 262 0 273 273 204 8 chrX 112777596 112777728 -64196412 - MLT1H LTR MaLR -3 546 389 1069 234 0 0 chrX 112777814 112778015 -64196125 + MER58A DNA MER1_type 24 224 0 895 230 75 0 chrX 112778370 112778570 -64195570 - MER58A DNA MER1_type -1 223 9 290 322 33 0 chrX 112778578 112778668 -64195472 - MIR SINE MIR -128 134 42 841 272 43 36 chrX 112778677 112778978 -64195162 + MER102b DNA MER1_type 35 337 -4 205 266 18 115 chrX 112779750 112779863 -64194277 + L2 LINE L2 2776 2877 -437 818 165 0 15 chrX 112780150 112780283 -64193857 - FLAM_C SINE Alu 0 133 3 280 213 16 0 chrX 112780947 112781008 -64193132 - MIR SINE MIR -135 127 66 717 265 19 71 chrX 112781568 112781836 -64192304 - MIR SINE MIR -6 256 3 21 0 0 0 chrX 112783719 112783740 -64190400 + AT_rich Low_complexity Low_complexity 1 21 0 789 142 47 53 chrX 112784381 112784571 -64189569 + MER53 DNA DNA 1 189 0 29 78 0 0 chrX 112784876 112784940 -64189200 + AT_rich Low_complexity Low_complexity 1 64 0 245 299 0 46 chrX 112785068 112785155 -64188985 + L2 LINE L2 3231 3313 0 563 307 26 16 chrX 112785186 112785378 -64188762 - MIR SINE MIR -4 258 65 653 352 56 34 chrX 112785941 112786495 -64187645 - L2 LINE L2 -10 3262 2702 327 341 79 69 chrX 112786526 112786704 -64187436 + L1ME3A LINE L1 254 429 -5943 2292 97 0 0 chrX 112786704 112787003 -64187137 + AluSg1 SINE Alu 3 301 -8 327 341 79 69 chrX 112787003 112787202 -64186938 + L1ME3A LINE L1 429 635 -5737 2016 263 54 31 chrX 112787271 112788232 -64185908 + L1ME LINE L1 42 1322 -4679 2003 115 59 36 chrX 112788497 112788853 -64185287 + THE1B LTR MaLR 1 364 0 348 262 69 77 chrX 112788853 112789215 -64184925 + L1ME3A LINE L1 983 1341 -5031 240 335 129 6 chrX 112789261 112789431 -64184709 + L1ME3A LINE L1 1552 1742 -4642 827 220 23 6 chrX 112789535 112789712 -64184428 - MLT1G LTR MaLR 0 590 411 316 353 41 12 chrX 112789889 112790059 -64184081 - MLT1H1 LTR MaLR -350 205 31 681 294 53 18 chrX 112790228 112790753 -64183387 + L1ME3A LINE L1 2175 2682 -3700 401 295 53 9 chrX 112790759 112791039 -64183101 + L1ME3A LINE L1 3433 3730 -2652 274 315 68 16 chrX 112791148 112791384 -64182756 + MLT1J2 LTR MaLR 16 254 -192 908 272 67 60 chrX 112791582 112791924 -64182216 + L1ME3A LINE L1 5138 5476 -930 372 43 0 0 chrX 112791924 112791970 -64182170 + (CA)n Simple_repeat Simple_repeat 1 46 0 908 272 67 60 chrX 112791970 112792249 -64181891 + L1ME3A LINE L1 5476 5752 -654 1650 170 8 102 chrX 112792249 112792650 -64181490 + MLT1A1 LTR MaLR 1 363 -2 908 272 67 60 chrX 112792650 112792800 -64181340 + L1ME3A LINE L1 5752 5899 -507 1766 212 38 36 chrX 112792800 112793304 -64180836 + Charlie4a DNA MER1_type 2 506 -2 908 272 67 60 chrX 112793304 112793564 -64180576 + L1ME3A LINE L1 5899 6181 -225 309 210 0 0 chrX 112793742 112793804 -64180336 - MLT1A1 LTR MaLR 0 374 313 4960 85 6 0 chrX 112793904 112794574 -64179566 + L1PA10 LINE L1 5483 6156 -12 627 147 0 188 chrX 112794575 112794655 -64179485 + L1 LINE L1 5004 5027 -1119 1543 176 3 61 chrX 112794655 112794967 -64179173 + AluJb SINE Alu 13 306 -6 627 147 0 188 chrX 112794967 112795083 -64179057 + L1 LINE L1 5027 5163 -983 999 250 5 5 chrX 112795183 112795407 -64178733 - MLT1A1 LTR MaLR -132 233 10 417 308 185 23 chrX 112795499 112795850 -64178290 - L2 LINE L2 -619 2695 2288 186 43 0 0 chrX 112795943 112795966 -64178174 + (A)n Simple_repeat Simple_repeat 1 23 0 285 148 0 0 chrX 112796142 112796196 -64177944 - L1MA7 LINE L1 -4 6287 6234 41 0 0 0 chrX 112796223 112796264 -64177876 + AT_rich Low_complexity Low_complexity 1 41 0 609 230 112 87 chrX 112796273 112796629 -64177511 - L1ME1 LINE L1 -3 6163 5799 1011 167 149 19 chrX 112796633 112796902 -64177238 - L1MA7 LINE L1 -51 6240 5937 336 316 53 43 chrX 112797072 112797259 -64176881 - MIR SINE MIR -54 208 20 2295 84 0 7 chrX 112798720 112799016 -64175124 + AluSx SINE Alu 1 294 -18 939 246 196 19 chrX 112799674 112799991 -64174149 + MER69 DNA AcHobo 147 519 -2007 345 214 40 64 chrX 112800017 112800190 -64173950 + MER69 DNA AcHobo 2011 2179 -347 26 0 0 0 chrX 112800854 112800880 -64173260 + AT_rich Low_complexity Low_complexity 1 26 0 1718 151 3 24 chrX 112801921 112802213 -64171927 + AluJb SINE Alu 1 286 -26 303 219 38 9 chrX 112802213 112802318 -64171822 + (TA)n Simple_repeat Simple_repeat 1 108 0 2283 132 73 25 chrX 112802319 112802609 -64171531 - L1M2 LINE L1 -524 5788 5468 1744 121 99 4 chrX 112802609 112802881 -64171259 - AluSg SINE Alu -12 298 1 2283 132 73 25 chrX 112802881 112803029 -64171111 - L1M2 LINE L1 -844 5468 5329 1979 177 71 9 chrX 112803011 112803464 -64170676 + L1MA9 LINE L1 5795 6275 -37 * 822 205 42 144 chrX 112805052 112805392 -64168748 - LTR37B LTR ERV1 0 468 198 195 42 0 0 chrX 112805392 112805416 -64168724 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 822 205 42 144 chrX 112805416 112805596 -64168544 - LTR37B LTR ERV1 -270 198 1 271 318 84 19 chrX 112806135 112806242 -64167898 + L2 LINE L2 3196 3309 -4 460 152 9 9 chrX 112806422 112806527 -64167613 + CT-rich Low_complexity Low_complexity 3 107 0 192 111 0 0 chrX 112806988 112807024 -64167116 + (A)n Simple_repeat Simple_repeat 1 36 0 2040 114 3 10 chrX 112807062 112807378 -64166762 - AluSx SINE Alu 0 312 1 529 295 84 76 chrX 112807428 112807798 -64166342 + MLT1I LTR MaLR 34 406 -3 21 36 0 0 chrX 112808412 112808440 -64165700 + AT_rich Low_complexity Low_complexity 1 28 0 3220 216 19 55 chrX 112809734 112810072 -64164068 - L1ME1 LINE L1 -9 6157 5809 1276 124 21 0 chrX 112810072 112810300 -64163840 + L1PA7 LINE L1 5939 6170 0 3220 216 19 55 chrX 112810300 112810838 -64163302 - L1ME1 LINE L1 -357 5809 5311 1214 224 116 0 chrX 112810871 112811130 -64163010 + AluJo SINE Alu 2 290 -12 388 209 132 11 chrX 112811242 112811333 -64162807 - L1M4 LINE L1 -6439 103 2 1620 290 25 43 chrX 112811441 112812085 -64162055 + L1MCc LINE L1 696 1327 -5096 3986 269 52 27 chrX 112812086 112814911 -64159229 + L1MCc LINE L1 1585 4441 -2500 1525 237 30 22 chrX 112815026 112815727 -64158413 + L1M3 LINE L1 2090 2802 -3580 * 2233 250 38 30 chrX 112815723 112816480 -64157660 + L1M3 LINE L1 3589 4351 -2031 238 136 0 0 chrX 112816502 112816546 -64157594 - L1MA3 LINE L1 0 6305 6262 4440 219 32 22 chrX 112816552 112816866 -64157274 + L1M3 LINE L1 4338 4647 -1772 488 121 0 0 chrX 112816866 112816947 -64157193 + L1MA4 LINE L1 6212 6294 -6 4440 219 32 22 chrX 112816947 112818293 -64155847 + L1M3 LINE L1 4647 6012 -407 992 178 35 151 chrX 112818285 112818440 -64155700 + L1M4 LINE L1 2600 2771 -3375 * 454 17 0 17 chrX 112818440 112818499 -64155641 - AluY SINE Alu -17 295 238 992 178 35 151 chrX 112818499 112818683 -64155457 + L1M4 LINE L1 2771 2951 -3195 307 247 0 0 chrX 112818683 112818764 -64155376 + L1M4 LINE L1 2917 2997 -3149 2219 128 44 0 chrX 112818766 112819110 -64155030 - MER47A DNA MER2_type -1 365 7 420 243 7 13 chrX 112819117 112819269 -64154871 + L1M4 LINE L1 3025 3175 -2971 317 279 0 0 chrX 112819334 112819420 -64154720 + L1M4 LINE L1 3811 3896 -2250 1649 209 46 27 chrX 112819423 112819796 -64154344 + MSTD LTR MaLR 5 384 -12 3579 226 33 7 chrX 112819811 112820754 -64153386 + L1M4 LINE L1 3876 4842 -1304 1771 229 77 10 chrX 112820873 112821288 -64152852 + MER77 LTR ERV1 163 605 0 2343 212 34 22 chrX 112821290 112822259 -64151881 + L1M4 LINE L1 4836 5812 -372 25991 30 7 2 chrX 112822359 112825533 -64148607 - L1P LINE L1 -803 5343 2153 463 121 0 0 chrX 112825535 112825601 -64148539 - L1MA6 LINE L1 -351 5949 5884 * 3288 258 53 30 chrX 112825593 112827493 -64146647 - L1 LINE L1 -3626 3939 2049 309 242 62 108 chrX 112827541 112827735 -64146405 - L1 LINE L1 -6711 855 671 249 246 58 65 chrX 112828068 112828206 -64145934 - L1MDa LINE L1 -4881 1659 1523 187 330 113 0 chrX 112828612 112828718 -64145422 + L2 LINE L2 3196 3313 0 276 175 0 0 chrX 112830572 112830635 -64143505 + A-rich Low_complexity Low_complexity 1 63 0 1497 251 81 59 chrX 112830730 112831284 -64142856 - MLT1F1 LTR MaLR 0 567 1 1099 165 0 16 chrX 112832474 112832662 -64141478 + L1PB4 LINE L1 5968 6152 -4 266 121 17 0 chrX 112832673 112832731 -64141409 + L1MA4A LINE L1 6244 6302 -1 221 196 18 0 chrX 112833749 112833805 -64140335 + (TA)n Simple_repeat Simple_repeat 1 57 0 325 331 126 11 chrX 112834019 112834194 -64139946 - MIR3 SINE MIR -11 197 3 22 0 0 0 chrX 112834828 112834850 -64139290 + AT_rich Low_complexity Low_complexity 1 22 0 1996 143 0 9 chrX 112835565 112835880 -64138260 + AluSx SINE Alu 1 312 0 745 268 65 36 chrX 112836626 112837041 -64137099 - L1MC5 LINE L1 -23 7938 7512 4766 191 47 17 chrX 112837046 112838206 -64135934 - L1MD1 LINE L1 -5 6237 5033 321 118 0 0 chrX 112838206 112838257 -64135883 + (TA)n Simple_repeat Simple_repeat 2 52 0 4766 191 47 17 chrX 112838257 112838333 -64135807 - L1MD1 LINE L1 -1209 5033 4961 3529 208 64 28 chrX 112838451 112839246 -64134894 - L1MB7 LINE L1 -16 6168 5321 2302 65 14 0 chrX 112839246 112839540 -64134600 - AluY SINE Alu -13 298 1 3529 208 64 28 chrX 112839540 112839750 -64134390 - L1MB7 LINE L1 -863 5321 5120 1254 210 24 9 chrX 112839850 112840178 -64133962 - L1MB7 LINE L1 -2974 3172 2840 932 160 119 9 chrX 112841248 112841379 -64132761 - L1MA9 LINE L1 -5 6307 6192 246 32 0 0 chrX 112841379 112841410 -64132730 + (TG)n Simple_repeat Simple_repeat 2 32 0 932 160 119 9 chrX 112841410 112841497 -64132643 - L1MA9 LINE L1 -120 6192 6065 32 26 0 0 chrX 112841944 112841983 -64132157 + AT_rich Low_complexity Low_complexity 1 39 0 732 263 17 0 chrX 112842529 112842704 -64131436 + MER5B DNA MER1_type 1 178 0 2368 99 0 0 chrX 112843076 112843389 -64130751 + AluSq SINE Alu 1 313 0 9935 133 28 0 chrX 112843645 112845185 -64128955 + Tigger1 DNA MER2_type 1 1583 -835 2413 122 10 41 chrX 112845187 112845337 -64128803 - L1MA3 LINE L1 -469 5836 5683 1821 162 0 0 chrX 112845337 112845661 -64128479 + AluJb SINE Alu 1 324 0 2413 122 10 41 chrX 112845661 112845920 -64128220 - L1MA3 LINE L1 -622 5683 5439 1078 113 102 6 chrX 112846061 112846238 -64127902 + Tigger1 DNA MER2_type 2225 2418 0 210 239 0 84 chrX 112846691 112846833 -64127307 + (TATATG)n Simple_repeat Simple_repeat 3 132 0 * 241 238 10 30 chrX 112846738 112846839 -64127301 + (TA)n Simple_repeat Simple_repeat 1 99 0 1728 163 22 37 chrX 112847091 112847446 -64126694 + L1MB8 LINE L1 5773 6122 -56 270 226 0 32 chrX 112847722 112847784 -64126356 + MIR SINE MIR 200 259 -3 221 150 0 0 chrX 112847787 112847827 -64126313 + (CAT)n Simple_repeat Simple_repeat 2 41 0 37 0 0 0 chrX 112848179 112848216 -64125924 + AT_rich Low_complexity Low_complexity 1 37 0 2241 65 3 7 chrX 112848216 112848506 -64125634 - AluSc SINE Alu -20 289 1 2318 157 47 5 chrX 112848633 112849041 -64125099 + MSTB LTR MaLR 2 426 0 37 0 0 0 chrX 112849446 112849483 -64124657 + AT_rich Low_complexity Low_complexity 1 37 0 6934 68 0 0 chrX 112849487 112850482 -64123658 - L1PA3 LINE L1 0 6155 5213 2009 20 0 0 chrX 112850482 112850724 -64123416 + L1PA3 LINE L1 4987 5228 -918 21 57 0 0 chrX 112850802 112850837 -64123303 + AT_rich Low_complexity Low_complexity 1 35 0 1981 144 3 3 chrX 112850837 112851135 -64123005 - AluSx SINE Alu -14 298 1 267 284 0 12 chrX 112851211 112851292 -64122848 - MER34-int LTR ERV1 -5185 1146 1067 916 251 94 87 chrX 112851328 112851917 -64122223 - MER34-int LTR ERV1 -4534 1412 357 301 271 62 62 chrX 112851917 112852046 -64122094 - MER34-int LTR ERV1 -6352 449 321 1302 237 24 96 chrX 112852212 112852744 -64121396 - MER34 LTR ERV1 -48 494 1 326 379 46 6 chrX 112853546 112853720 -64120420 + L2 LINE L2 1762 1942 -1372 3577 97 59 10 chrX 112853869 112854459 -64119681 + L1MA2 LINE L1 5686 6304 0 27 0 0 0 chrX 112854459 112854486 -64119654 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chrX 112854594 112854621 -64119519 + AT_rich Low_complexity Low_complexity 1 27 0 421 236 43 36 chrX 112854767 112854907 -64119233 - L1ME LINE L1 -351 5819 5679 2363 152 5 12 chrX 112855105 112855527 -64118613 + L1P LINE L1 4538 4956 -1190 536 247 19 13 chrX 112855627 112855781 -64118359 + L1PA11 LINE L1 4891 5045 -1101 * 2736 33 0 0 chrX 112855778 112856108 -64118032 - L1P2 LINE L1 -536 5619 5290 3652 23 9 0 chrX 112856108 112856540 -64117600 + L1PA4 LINE L1 5716 6152 -3 * 6294 81 21 15 chrX 112856535 112857670 -64116470 + L1PA11 LINE L1 5031 6171 -3 1204 214 19 36 chrX 112857684 112857993 -64116147 - L1MA9 LINE L1 -22 6290 5987 376 278 58 48 chrX 112858228 112858537 -64115603 - L1M4 LINE L1 -2380 3766 3455 2318 115 0 0 chrX 112858550 112858862 -64115278 - AluSx SINE Alu 0 312 1 501 284 67 84 chrX 112858920 112859336 -64114804 + MLT1J LTR MaLR 31 439 -72 492 253 78 54 chrX 112859538 112859910 -64114230 - L1M4 LINE L1 -2900 3246 2866 336 304 38 32 chrX 112860053 112860211 -64113929 - MIR SINE MIR 0 262 104 22 35 0 0 chrX 112860573 112860602 -64113538 + AT_rich Low_complexity Low_complexity 1 29 0 1346 230 32 3 chrX 112860898 112861207 -64112933 - MER63 DNA MER1_type -2 1058 741 2239 168 3 11 chrX 112861351 112861727 -64112413 - MLT1C LTR MaLR -92 375 3 249 33 0 0 chrX 112861837 112861867 -64112273 + (TG)n Simple_repeat Simple_repeat 2 31 0 1918 157 7 0 chrX 112861868 112862167 -64111973 - AluSx SINE Alu -11 301 1 1066 275 72 90 chrX 112862205 112863569 -64110571 - L1MC4a LINE L1 -1215 6662 5324 1376 193 7 4 chrX 112863795 112864064 -64110076 - AluJo SINE Alu -20 292 23 1368 116 10 0 chrX 112864156 112864363 -64109777 - L1MA4 LINE L1 -457 5843 5635 253 278 31 21 chrX 112864431 112864528 -64109612 - L1P LINE L1 -1146 5000 4903 329 265 51 83 chrX 112864966 112865219 -64108921 - L1MC4a LINE L1 -1746 4469 4225 24 0 0 0 chrX 112865219 112865243 -64108897 + AT_rich Low_complexity Low_complexity 1 24 0 * 2393 184 18 20 chrX 112865240 112865730 -64108410 - L1MA3 LINE L1 0 6305 5817 3407 171 15 21 chrX 112865250 112865911 -64108229 - L1MA4 LINE L1 -9 6291 5635 2706 152 36 8 chrX 112865911 112866625 -64107515 + L1MA4 LINE L1 4876 5608 -697 216 24 73 0 chrX 112866625 112866666 -64107474 + A-rich Low_complexity Low_complexity 2 45 0 2706 152 36 8 chrX 112866666 112866699 -64107441 + L1M1 LINE L1 5608 5639 -666 23 0 0 0 chrX 112866862 112866885 -64107255 + AT_rich Low_complexity Low_complexity 1 23 0 2113 135 0 0 chrX 112866885 112867181 -64106959 + AluSx SINE Alu 1 296 -16 440 290 118 46 chrX 112867185 112868181 -64105959 - L1MC4a LINE L1 -2199 4016 2949 23 68 0 0 chrX 112868190 112868234 -64105906 + AT_rich Low_complexity Low_complexity 1 44 0 321 334 47 59 chrX 112868615 112869019 -64105121 - L1MC4a LINE L1 -3885 2511 2113 3230 59 0 49 chrX 112869795 112870266 -64103874 - LTR7 LTR ERV1 -2 448 1 2614 63 45 13 chrX 112870266 112870646 -64103494 - HERVH LTR ERV1 0 7713 7322 1452 111 18 5 chrX 112870644 112870861 -64103279 - HERVH LTR ERV1 -1894 5819 5600 * 4228 148 3 1 chrX 112870862 112871523 -64102617 - HERVH LTR ERV1 -2564 5149 4488 3427 111 0 6 chrX 112871525 112872030 -64102110 - HERVH LTR ERV1 -3720 3993 3492 * 19601 96 64 31 chrX 112872020 112875203 -64098937 - HERVH LTR ERV1 -4423 3290 1 3383 62 2 7 chrX 112875205 112875655 -64098485 - LTR7 LTR ERV1 -2 448 1 264 59 0 0 chrX 112876749 112876783 -64097357 + (TG)n Simple_repeat Simple_repeat 1 34 0 1387 285 74 42 chrX 112876858 112877549 -64096591 - L1MC4a LINE L1 -5404 801 89 188 404 30 0 chrX 112877834 112877933 -64096207 + L2 LINE L2 2872 2973 -299 869 155 204 6 chrX 112880071 112880252 -64093888 + L1PA16 LINE L1 5946 6162 -4 562 278 42 21 chrX 112880254 112880445 -64093695 + MIR SINE MIR 62 256 -6 871 176 39 69 chrX 112880977 112881181 -64092959 + MER3 DNA MER1_type 4 201 -8 309 255 10 61 chrX 112881376 112881474 -64092666 + MIR SINE MIR 42 134 -74 404 285 35 14 chrX 112882253 112882397 -64091743 - MIR SINE MIR -69 193 47 21 57 0 0 chrX 112883708 112883743 -64090397 + AT_rich Low_complexity Low_complexity 1 35 0 477 280 39 28 chrX 112883872 112884054 -64090086 - MIR SINE MIR -25 237 54 21 57 0 0 chrX 112884228 112884263 -64089877 + AT_rich Low_complexity Low_complexity 1 35 0 2042 247 25 11 chrX 112884658 112885095 -64089045 + L1MB7 LINE L1 11 453 -6406 2630 228 93 24 chrX 112885208 112886142 -64087998 + L1MB7 LINE L1 663 2518 -4548 708 222 0 0 chrX 112886290 112886416 -64087724 + FLAM_A SINE Alu 1 126 -7 723 263 57 26 chrX 112886575 112887075 -64087065 + L1MB7 LINE L1 2718 3199 -3758 1232 162 0 39 chrX 112887075 112887304 -64086836 + AluSg/x SINE Alu 81 300 -12 330 210 5 0 chrX 112887308 112887409 -64086731 + L1MB7 LINE L1 5798 5900 -1057 2049 125 3 7 chrX 112887458 112887754 -64086386 - AluSx SINE Alu -17 295 1 3488 204 31 19 chrX 112887888 112888931 -64085209 + L1MB7 LINE L1 5859 6921 -74 4794 89 16 1 chrX 112888972 112889332 -64084808 - L1PB1 LINE L1 -1 6150 5774 378 0 0 0 chrX 112889332 112889374 -64084766 + (TA)n Simple_repeat Simple_repeat 1 42 0 4794 89 16 1 chrX 112889374 112889678 -64084462 - L1PB1 LINE L1 -377 5774 5476 5965 23 1 0 chrX 112889681 112890373 -64083767 - L1PA4 LINE L1 -3 6152 5460 2726 151 109 0 chrX 112890373 112891093 -64083047 + L1PA4 LINE L1 4654 5466 -689 * 4097 217 2 3 chrX 112891090 112891978 -64082162 - L1 LINE L1 -1968 4178 3292 332 164 14 0 chrX 112891996 112892069 -64082071 + L1MB7 LINE L1 6920 6993 -2 243 0 0 0 chrX 112893015 112893042 -64081098 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2682 107 16 0 chrX 112895495 112895878 -64078262 - L1PA10 LINE L1 -1 6167 5779 1990 133 10 3 chrX 112896568 112896861 -64077279 - AluSx SINE Alu -17 295 1 517 58 0 103 chrX 112896991 112897040 -64077100 - MADE1 DNA Mariner 0 80 42 2393 53 7 13 chrX 112897040 112897339 -64076801 + AluY SINE Alu 1 297 -14 517 58 0 103 chrX 112897339 112897376 -64076764 - MADE1 DNA Mariner -38 42 3 2804 319 53 9 chrX 112897691 112898846 -64075294 - ERVL LTR ERVL -1200 4564 3360 390 300 0 0 chrX 112900542 112900642 -64073498 - MIR SINE MIR -59 203 104 2079 118 13 10 chrX 112900800 112901105 -64073035 - AluSq SINE Alu -7 306 1 466 341 228 8 chrX 112903945 112904326 -64069814 + L3 LINE CR1 1026 1490 -87 5495 145 53 14 chrX 112904491 112905470 -64068670 + L1MB3 LINE L1 13 1029 -5355 5067 14 0 0 chrX 112905469 112906049 -64068091 - L1PA3 LINE L1 -293 5862 5283 * 2432 24 17 7 chrX 112906049 112906333 -64067807 + L1PA3 LINE L1 5857 6155 0 7425 167 27 35 chrX 112906335 112906703 -64067437 + L1MB3 LINE L1 1021 1390 -4992 2368 67 3 0 chrX 112906703 112907001 -64067139 + AluY SINE Alu 1 299 -12 7425 167 27 35 chrX 112907001 112907376 -64066764 + L1MB3 LINE L1 1390 1766 -4616 266 0 29 0 chrX 112907376 112907410 -64066730 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 7425 167 27 35 chrX 112907410 112908568 -64065572 + L1MB3 LINE L1 1766 2911 -3471 3230 175 13 11 chrX 112908568 112909190 -64064950 + L1MB3 LINE L1 5795 6417 -2 7425 167 27 35 chrX 112909190 112909210 -64064930 + L1MB3 LINE L1 2911 2930 -3452 236 286 95 19 chrX 112909782 112909887 -64064253 - L2 LINE L2 -22 3291 3179 2041 76 23 94 chrX 112909983 112910325 -64063815 + AluYb8 SINE Alu 1 318 0 2487 147 11 5 chrX 112910550 112910993 -64063147 + L1PA10 LINE L1 4878 5323 -823 1389 155 56 21 chrX 112910995 112911279 -64062861 + L1PA10 LINE L1 5874 6167 -1 1850 212 59 0 chrX 112911359 112911732 -64062408 - MSTD LTR MaLR 0 396 2 349 315 87 87 chrX 112911763 112911946 -64062194 - L2 LINE L2 -610 2704 2522 2325 89 7 0 chrX 112911946 112912238 -64061902 + AluSx SINE Alu 6 299 -13 349 315 87 87 chrX 112912238 112912492 -64061648 - L2 LINE L2 -791 2523 2267 339 378 82 11 chrX 112912644 112912911 -64061229 - L3b LINE CR1 -8 1575 1290 1883 157 0 7 chrX 112913087 112913387 -64060753 + AluSq SINE Alu 1 298 -15 384 333 45 35 chrX 112914398 112914596 -64059544 + MIR SINE MIR 19 218 -44 24 0 0 0 chrX 112914602 112914626 -64059514 + AT_rich Low_complexity Low_complexity 1 24 0 1605 177 27 27 chrX 112914912 112915212 -64058928 + AluJb SINE Alu 1 300 -12 681 126 34 0 chrX 112915841 112915960 -64058180 - L1MA9 LINE L1 -1 6311 6189 2377 110 0 0 chrX 112915994 112916302 -64057838 + AluSx SINE Alu 1 308 -4 682 132 0 9 chrX 112916305 112916419 -64057721 + L1MB7 LINE L1 6060 6172 -12 2377 99 0 0 chrX 112916439 112916743 -64057397 + AluSx SINE Alu 1 304 -8 2000 162 0 3 chrX 112916749 112917058 -64057082 + AluJo SINE Alu 1 308 -4 341 189 42 0 chrX 112918491 112918586 -64055554 + L1M4c LINE L1 3073 3171 -3211 741 131 13 78 chrX 112918590 112918743 -64055397 + FLAM_C SINE Alu 1 143 0 8971 184 43 28 chrX 112918746 112919271 -64054869 + L1MA10 LINE L1 3156 3672 -2898 1678 198 0 0 chrX 112919271 112919564 -64054576 + AluSq SINE Alu 1 293 -20 2373 68 4 0 chrX 112919567 112919848 -64054292 + AluSp SINE Alu 17 298 -15 8971 184 43 28 chrX 112919848 112922680 -64051460 + L1MA10 LINE L1 3673 6569 -1 264 226 36 12 chrX 112923997 112924081 -64050059 + MARNA DNA Mariner 376 461 -125 479 165 0 0 chrX 112925057 112925136 -64049004 - Tigger5 DNA MER2_type -2244 79 1 447 338 46 59 chrX 112925404 112925623 -64048517 - L3 LINE CR1 -10 1567 1352 360 291 0 0 chrX 112925673 112925759 -64048381 - L2 LINE L2 -1 3312 3227 403 324 162 25 chrX 112925777 112926259 -64047881 - L3 LINE CR1 -280 1297 750 22 0 0 0 chrX 112927467 112927489 -64046651 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 112928889 112928917 -64045223 + AT_rich Low_complexity Low_complexity 1 28 0 225 246 49 0 chrX 112929526 112929587 -64044553 - MIR SINE MIR -63 145 82 288 0 0 0 chrX 112930651 112930683 -64043457 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 40 0 0 chrX 112931439 112931464 -64042676 + (CAGCG)n Simple_repeat Simple_repeat 3 27 0 233 263 0 26 chrX 112933710 112933786 -64040354 - MIR SINE MIR -59 203 130 732 245 101 17 chrX 112935747 112935984 -64038156 - MIR SINE MIR 0 262 6 187 255 0 0 chrX 112937399 112937450 -64036690 + L2 LINE L2 3263 3313 0 287 232 21 63 chrX 112938862 112938957 -64035183 + MIR3 SINE MIR 93 183 -25 180 289 11 78 chrX 112938940 112939030 -64035110 - MIR3 SINE MIR -40 168 85 * 384 137 96 0 chrX 112939101 112939174 -64034966 - MADE1 DNA Mariner 0 80 1 781 183 0 0 chrX 112940169 112940295 -64033845 - FLAM_A SINE Alu -7 126 1 180 306 49 56 chrX 112940391 112940535 -64033605 + L2 LINE L2 3171 3313 0 318 340 33 27 chrX 112941939 112942089 -64032051 - MIR SINE MIR -60 202 52 1698 154 68 4 chrX 112942118 112942279 -64031861 - AluJo SINE Alu -14 298 110 189 0 0 0 chrX 112942279 112942300 -64031840 + (TTG)n Simple_repeat Simple_repeat 2 22 0 1698 154 68 4 chrX 112942300 112942418 -64031722 - AluJo SINE Alu -202 110 1 221 175 0 0 chrX 112942523 112942563 -64031577 + (TA)n Simple_repeat Simple_repeat 1 40 0 2308 116 0 0 chrX 112943831 112944134 -64030006 + AluSx SINE Alu 2 304 -8 406 350 19 1 chrX 112945773 112945907 -64028233 - MIR SINE MIR -69 139 2 487 241 184 39 chrX 112946945 112947152 -64026988 - MIR SINE MIR -6 256 20 35 0 0 0 chrX 112947475 112947510 -64026630 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chrX 112947632 112947681 -64026459 + AT_rich Low_complexity Low_complexity 1 49 0 3505 58 0 7 chrX 112948165 112948616 -64025524 - LTR7 LTR ERV1 -2 448 1 2435 76 40 13 chrX 112948616 112948996 -64025144 - HERVH LTR ERV1 0 7713 7324 1322 115 23 9 chrX 112948996 112949213 -64024927 - HERVH LTR ERV1 -1894 5819 5600 4130 142 1 1 chrX 112949214 112949876 -64024264 - HERVH LTR ERV1 -2564 5149 4488 3187 97 2 10 chrX 112949878 112950371 -64023769 - HERVH LTR ERV1 -3720 3993 3505 18955 84 56 60 chrX 112950374 112953680 -64020460 - HERVH LTR ERV1 -4422 3291 1 3412 65 2 5 chrX 112953682 112954131 -64020009 - LTR7 LTR ERV1 -2 448 1 2049 131 17 0 chrX 112954598 112954888 -64019252 + AluSx SINE Alu 1 295 -17 1088 181 29 13 chrX 112955132 112955370 -64018770 - L1MB8 LINE L1 -2 6176 5935 877 219 80 13 chrX 112956687 112956924 -64017216 + L1ME2 LINE L1 5897 6149 -15 2604 46 0 0 chrX 112958582 112958887 -64015253 - AluY SINE Alu -6 305 1 4014 79 16 20 chrX 112959646 112959811 -64014329 - MER41A LTR ERV1 0 554 390 2132 88 3 7 chrX 112959811 112960129 -64014011 - AluSx SINE Alu 0 317 1 4014 79 16 20 chrX 112960129 112960518 -64013622 - MER41A LTR ERV1 -164 390 1 1811 89 4 0 chrX 112961134 112961392 -64012748 - AluSx SINE Alu 0 317 59 463 66 0 0 chrX 113161392 113161453 -63812687 - Alu SINE Alu -256 62 2 21 0 0 0 chrX 113162811 113162832 -63811308 + AT_rich Low_complexity Low_complexity 1 21 0 36 23 0 0 chrX 113163520 113163563 -63810577 + AT_rich Low_complexity Low_complexity 1 43 0 286 267 248 24 chrX 113164117 113164323 -63809817 + MIR SINE MIR 7 258 -4 188 384 57 0 chrX 113164562 113164721 -63809419 - L2 LINE L2 -549 2765 2598 215 302 48 24 chrX 113164738 113164864 -63809276 - L2 LINE L2 -821 2493 2365 1380 155 16 12 chrX 113165588 113165839 -63808301 + L1MB7 LINE L1 5933 6184 0 6337 133 142 120 chrX 113166326 113167982 -63806158 - pTR5 LTR ERV1 0 2438 747 363 209 0 14 chrX 113167982 113168060 -63806080 + FLAM_A SINE Alu 9 75 -58 4041 119 47 188 chrX 113168061 113169208 -63804932 - pTR5 LTR ERV1 -19 2419 1435 5236 149 69 54 chrX 113169209 113170394 -63803746 - pTR5 LTR ERV1 -520 1918 743 206 191 0 21 chrX 113170477 113170524 -63803616 - L2 LINE L2 -4 3309 3264 307 252 42 63 chrX 113170903 113171046 -63803094 + MIR3 SINE MIR 65 204 -4 548 207 14 41 chrX 113171497 113171642 -63802498 - MIR SINE MIR -7 255 115 238 280 11 11 chrX 113172170 113172263 -63801877 + L2 LINE L2 2891 2983 -289 892 283 4 8 chrX 113172496 113172747 -63801393 + MIR SINE MIR 1 250 -12 480 304 18 32 chrX 113172906 113173123 -63801017 + L2 LINE L2 3099 3312 -1 682 301 91 3 chrX 113173920 113174229 -63799911 - L1ME4a LINE L1 -267 5854 5519 999 79 6 61 chrX 113174270 113174435 -63799705 + L1MA7 LINE L1 5885 6040 -251 3199 168 47 33 chrX 113174435 113175115 -63799025 - LTR8A LTR ERV1 0 691 1 206 265 0 0 chrX 113175246 113175295 -63798845 + (TA)n Simple_repeat Simple_repeat 1 49 0 291 301 159 0 chrX 113175306 113175482 -63798658 - L1ME4a LINE L1 -1314 4832 4629 230 273 28 0 chrX 113175903 113175991 -63798149 + MIR SINE MIR 60 152 -64 536 284 49 0 chrX 113176065 113176248 -63797892 + MIR SINE MIR 3 194 -68 3273 97 14 111 chrX 113176261 113176715 -63797425 - MER4B LTR ERV1 -10 769 226 2307 86 13 10 chrX 113176715 113177019 -63797121 - AluSq SINE Alu -8 305 1 3273 97 14 111 chrX 113177019 113177226 -63796914 - MER4B LTR ERV1 -553 226 1 215 290 0 0 chrX 113177230 113177292 -63796848 + MIR SINE MIR 201 262 0 384 202 182 0 chrX 113177545 113177644 -63796496 - LTR67 LTR ERVL -7 550 434 486 190 52 26 chrX 113178047 113178163 -63795977 - MER53 DNA DNA 0 189 71 854 268 33 7 chrX 113178300 113178602 -63795538 + L1ME4a LINE L1 5599 5908 -213 365 139 89 0 chrX 113178602 113178681 -63795459 + MIR SINE MIR 72 157 -105 192 135 0 0 chrX 113180402 113180439 -63793701 + (TGG)n Simple_repeat Simple_repeat 3 39 0 24 0 0 0 chrX 113181025 113181049 -63793091 + AT_rich Low_complexity Low_complexity 1 24 0 2334 93 0 0 chrX 113181101 113181391 -63792749 - AluSx SINE Alu -22 290 1 221 224 178 28 chrX 113182458 113182565 -63791575 - L2 LINE L2 -940 2374 2252 1309 274 82 87 chrX 113182619 113183191 -63790949 - L2 LINE L2 -1072 2242 1676 2126 127 0 9 chrX 113183191 113183507 -63790633 - AluSq SINE Alu 0 313 1 1309 274 82 87 chrX 113183507 113183944 -63790196 - L2 LINE L2 -1638 1676 1238 283 206 10 62 chrX 113183975 113183991 -63790149 - L1MD3 LINE L1 -1996 5999 5984 372 197 43 47 chrX 113183991 113184129 -63790011 - L1MB8 LINE L1 -193 5985 5842 * 796 185 26 65 chrX 113184117 113184349 -63789791 - L1MB8 LINE L1 -1745 4401 4179 277 342 9 0 chrX 113184358 113184469 -63789671 - L2 LINE L2 -2094 1220 1109 * 507 263 26 16 chrX 113184468 113184662 -63789478 - L2 LINE L2 -2498 816 621 444 19 0 0 chrX 113185197 113185250 -63788890 + (TG)n Simple_repeat Simple_repeat 1 53 0 2307 96 0 10 chrX 113185833 113186134 -63788006 + AluSq SINE Alu 1 298 -15 445 354 31 17 chrX 113186310 113186663 -63787477 + L2 LINE L2 1805 2162 -1152 417 272 78 49 chrX 113186750 113186993 -63787147 - Charlie8 DNA MER1_type -1964 453 204 318 127 0 0 chrX 113187029 113187084 -63787056 - Alu SINE Alu 0 302 248 873 115 0 0 chrX 113187100 113187213 -63786927 - AluSq/x SINE Alu -166 147 35 255 195 86 102 chrX 113187213 113187341 -63786799 - Charlie8 DNA MER1_type -2261 156 31 388 276 26 39 chrX 113187431 113187587 -63786553 + L2 LINE L2 2165 2318 -996 565 236 147 0 chrX 113187599 113187756 -63786384 - MER5A DNA MER1_type -2 187 8 650 214 88 6 chrX 113188104 113188263 -63785877 + MIR SINE MIR 21 192 -70 230 316 32 69 chrX 113188261 113188479 -63785661 - L2 LINE L2 -297 3016 2807 * 1387 297 10 5 chrX 113188481 113188865 -63785275 - LTR16A LTR ERVL -6 444 59 2124 100 45 3 chrX 113189054 113189343 -63784797 - AluJo SINE Alu -11 301 1 776 244 71 4 chrX 113189427 113189665 -63784475 + MIR SINE MIR 6 259 -3 441 259 0 76 chrX 113189670 113189801 -63784339 + MER5A DNA MER1_type 69 189 0 207 100 0 0 chrX 113189843 113189873 -63784267 + (T)n Simple_repeat Simple_repeat 1 30 0 297 271 160 82 chrX 113189904 113190148 -63783992 + L2 LINE L2 3007 3269 -3 380 196 120 0 chrX 113190342 113190434 -63783706 - L1ME4a LINE L1 -69 6052 5950 1074 233 89 41 chrX 113190465 113190967 -63783173 - L2 LINE L2 -8 3305 2750 729 266 25 0 chrX 113190971 113191174 -63782966 - L1ME4a LINE L1 -369 5752 5545 403 173 13 0 chrX 113191185 113191260 -63782880 - L2 LINE L2 -9 3304 3229 366 23 0 0 chrX 113192327 113192370 -63781770 + (TG)n Simple_repeat Simple_repeat 2 44 0 500 179 207 0 chrX 113192631 113192771 -63781369 - L1ME4a LINE L1 -111 6010 5842 2344 154 52 3 chrX 113192778 113193162 -63780978 - MER83 LTR ERV1 -43 405 3 602 281 122 53 chrX 113193184 113193675 -63780465 - L1ME4a LINE L1 -303 5818 5294 22 56 0 0 chrX 113195040 113195076 -63779064 + GC_rich Low_complexity Low_complexity 1 36 0 320 193 30 78 chrX 113196240 113196406 -63777734 + (TG)n Simple_repeat Simple_repeat 1 158 0 357 293 49 24 chrX 113196740 113196904 -63777236 - MER5B DNA MER1_type -4 174 7 23 0 0 0 chrX 113197146 113197169 -63776971 + AT_rich Low_complexity Low_complexity 1 23 0 846 133 0 22 chrX 113197169 113197304 -63776836 - FLAM_C SINE Alu -1 132 1 555 245 38 33 chrX 113197537 113197721 -63776419 + MIR3 SINE MIR 23 207 -1 480 157 29 49 chrX 113197785 113197887 -63776253 - L2 LINE L2 -27 3286 3187 297 374 67 8 chrX 113201316 113201746 -63772394 + L2 LINE L2 2525 2982 -290 224 365 48 24 chrX 113201902 113202028 -63772112 + L2 LINE L2 3129 3257 -15 21 0 0 0 chrX 113203428 113203449 -63770691 + AT_rich Low_complexity Low_complexity 1 21 0 1618 90 40 5 chrX 113204251 113204473 -63769667 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chrX 113205495 113205516 -63768624 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chrX 113206127 113206155 -63767985 + (A)n Simple_repeat Simple_repeat 1 28 0 249 189 38 0 chrX 113210186 113210239 -63763901 - L2 LINE L2 -30 3242 3188 252 130 0 0 chrX 113211283 113211329 -63762811 + (GA)n Simple_repeat Simple_repeat 2 47 0 189 0 0 0 chrX 113211938 113211959 -63762181 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2093 106 0 21 chrX 113212577 113212861 -63761279 - AluJo SINE Alu -21 291 14 835 104 0 0 chrX 113213077 113213183 -63760957 + AluSq/x SINE Alu 1 106 -206 180 176 0 0 chrX 113213696 113213730 -63760410 + T-rich Low_complexity Low_complexity 4 37 0 320 146 132 4 chrX 113214027 113214108 -63760032 + L1MA9 LINE L1 6226 6334 0 1571 168 65 3 chrX 113214495 113214810 -63759330 - AluJb SINE Alu 0 333 1 465 122 0 0 chrX 113214929 113215003 -63759137 + (CA)n Simple_repeat Simple_repeat 2 75 0 1967 134 0 0 chrX 113215209 113215485 -63758655 - AluSx SINE Alu -36 276 1 2491 208 96 3 chrX 113216781 113217396 -63756744 + L1MC1 LINE L1 4267 4938 -1208 6993 123 9 44 chrX 113217397 113218649 -63755491 + L1MC1 LINE L1 5068 6271 -62 2469 84 3 0 chrX 113218649 113218960 -63755180 - AluSx SINE Alu 0 312 1 6993 123 9 44 chrX 113218960 113219020 -63755120 + L1MC1 LINE L1 6271 6332 -1 30 59 0 0 chrX 113219043 113219094 -63755046 + AT_rich Low_complexity Low_complexity 1 51 0 499 221 137 0 chrX 113219114 113219245 -63754895 + MIR SINE MIR 113 261 -1 320 240 67 58 chrX 113219273 113219377 -63754763 - MIR SINE MIR -66 196 92 723 283 39 21 chrX 113220371 113220654 -63753486 - MARNA DNA Mariner -23 563 276 249 108 0 0 chrX 113221121 113221158 -63752982 + (GGA)n Simple_repeat Simple_repeat 3 39 0 1157 149 0 0 chrX 113221180 113221348 -63752792 - L1PB4 LINE L1 -3 6153 5986 228 268 42 103 chrX 113221384 113221597 -63752543 + L1ME4a LINE L1 5836 6035 -86 1405 131 15 5 chrX 113221649 113221855 -63752285 - L1PB4 LINE L1 -4 6152 5945 459 169 20 156 chrX 113222218 113222422 -63751718 - L1MA10 LINE L1 -1 6333 5994 1749 151 7 33 chrX 113222435 113222734 -63751406 - AluJo SINE Alu -21 291 1 2391 82 0 0 chrX 113222815 113223108 -63751032 + AluSx SINE Alu 3 295 -17 432 0 0 0 chrX 113226239 113226287 -63747853 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1958 131 0 7 chrX 113226290 113226572 -63747568 - AluSx SINE Alu -32 280 1 1705 244 117 44 chrX 113226771 113227698 -63746442 + L2 LINE L2 2283 3292 -21 2427 79 0 0 chrX 113227760 113228052 -63746088 + AluSg SINE Alu 1 292 -18 413 291 41 52 chrX 113228424 113228596 -63745544 + MER20B DNA MER1_type 20 189 -594 519 319 91 13 chrX 113229066 113229364 -63744776 - MER102b DNA MER1_type -20 321 1 648 252 114 49 chrX 113229822 113230000 -63744140 + MIR SINE MIR 1 201 -61 2189 116 3 0 chrX 113230000 113230294 -63743846 + AluSq SINE Alu 1 295 -18 648 252 114 49 chrX 113230294 113230361 -63743779 + MIR SINE MIR 201 262 0 321 26 0 0 chrX 113230721 113230759 -63743381 + (CCA)n Simple_repeat Simple_repeat 1 38 0 208 277 0 0 chrX 113231157 113231204 -63742936 + C-rich Low_complexity Low_complexity 1 47 0 279 268 0 24 chrX 113232298 113232380 -63741760 + (CCG)n Simple_repeat Simple_repeat 2 81 0 186 310 78 35 chrX 113233395 113233511 -63740629 - L3 LINE CR1 -506 1071 951 512 319 26 52 chrX 113233755 113233984 -63740156 - MIR SINE MIR -32 230 8 201 74 0 0 chrX 113234290 113234317 -63739823 + (TAAAAA)n Simple_repeat Simple_repeat 1 27 0 450 297 66 36 chrX 113234357 113234562 -63739578 + MIR SINE MIR 33 255 -7 1786 119 20 82 chrX 113235544 113235882 -63738258 - AluSx SINE Alu 0 319 1 1779 117 32 68 chrX 113236013 113236322 -63737818 + AluSx SINE Alu 2 299 -13 2269 111 0 3 chrX 113236322 113236629 -63737511 + AluSx SINE Alu 1 306 -6 1117 146 17 88 chrX 113236784 113236865 -63737275 - L1M3 LINE L1 -505 5666 5581 180 0 0 0 chrX 113236865 113236885 -63737255 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1117 146 17 88 chrX 113236885 113237043 -63737097 - L1M3 LINE L1 -590 5581 5444 360 294 103 21 chrX 113237107 113237260 -63736880 - L1ME LINE L1 -357 5764 5612 1369 183 72 131 chrX 113237260 113237512 -63736628 - L1MC4 LINE L1 0 8042 7777 2345 99 3 0 chrX 113237512 113237815 -63736325 - AluSp SINE Alu -9 304 1 1369 183 72 131 chrX 113237815 113238075 -63736065 - L1MC4 LINE L1 -265 7777 5555 2597 215 72 17 chrX 113238172 113239402 -63734738 - L1MC4 LINE L1 -140 7902 6458 1461 217 95 94 chrX 113239428 113240005 -63734135 + MLT1E LTR MaLR 15 592 -1 2017 132 13 19 chrX 113240007 113240318 -63733822 + AluJb SINE Alu 1 309 -3 250 146 0 0 chrX 113240671 113240712 -63733428 - L1MC4 LINE L1 -538 5583 5543 208 232 0 36 chrX 113240719 113240751 -63733389 + CT-rich Low_complexity Low_complexity 6 37 -22 2487 87 0 0 chrX 113240751 113241062 -63733078 - AluSx SINE Alu -1 311 1 208 232 0 36 chrX 113241062 113241085 -63733055 + CT-rich Low_complexity Low_complexity 37 59 0 1997 112 0 41 chrX 113241176 113241518 -63732622 + AluSq SINE Alu 1 330 0 538 263 26 23 chrX 113241947 113242131 -63732009 - MIR SINE MIR -50 212 30 2111 112 10 10 chrX 113242139 113242433 -63731707 - AluSx SINE Alu -18 294 1 506 216 50 85 chrX 113242819 113242913 -63731227 + L1MC4a LINE L1 5731 5816 -1992 2330 97 0 3 chrX 113242913 113243212 -63730928 + AluSx SINE Alu 1 298 -14 506 216 50 85 chrX 113243212 113243316 -63730824 + L1MC4a LINE L1 5816 5922 -1886 30 45 0 0 chrX 113243566 113243610 -63730530 + AT_rich Low_complexity Low_complexity 1 44 0 501 190 10 0 chrX 113244069 113244169 -63729971 - L1MB8 LINE L1 -2 6176 6076 511 237 148 0 chrX 113244330 113244465 -63729675 - MIR3 SINE MIR -6 202 48 1997 116 0 0 chrX 113244475 113244742 -63729398 - AluSx SINE Alu -45 267 1 202 185 0 37 chrX 113245033 113245087 -63729053 + (TTA)n Simple_repeat Simple_repeat 3 54 0 186 43 0 0 chrX 113245544 113245567 -63728573 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 535 229 104 40 chrX 113245602 113245674 -63728466 + L1ME4a LINE L1 5622 5688 -433 1613 169 53 30 chrX 113245674 113245975 -63728165 - AluJo SINE Alu -4 308 1 535 229 104 40 chrX 113245975 113246103 -63728037 + L1ME4a LINE L1 5688 5835 -286 814 134 10 119 chrX 113246129 113246323 -63727817 - L1MB7 LINE L1 -9 6175 6003 698 281 64 51 chrX 113246332 113246595 -63727545 + L1ME LINE L1 5280 5551 -570 2063 139 0 0 chrX 113246595 113246890 -63727250 + AluSx SINE Alu 1 295 -17 698 281 64 51 chrX 113246890 113247035 -63727105 + L1ME LINE L1 5551 5693 -428 513 307 34 21 chrX 113247083 113247295 -63726845 - MIR SINE MIR -29 233 21 559 245 36 47 chrX 113247507 113247699 -63726441 - L2 LINE L2 0 3313 3124 1432 222 89 18 chrX 113247699 113248057 -63726083 - MLT1E1 LTR MaLR -196 397 25 3458 216 57 24 chrX 113248057 113248642 -63725498 - L2 LINE L2 -1007 2307 1682 2485 71 3 0 chrX 113248642 113248938 -63725202 + AluSp SINE Alu 1 297 -16 3458 216 57 24 chrX 113248938 113249224 -63724916 - L2 LINE L2 -1632 1682 1407 2603 167 82 15 chrX 113249923 113250277 -63723863 + MLT1D LTR MaLR 1 396 -109 2339 103 168 11 chrX 113250277 113250647 -63723493 + MSTA LTR MaLR 1 428 0 2603 167 82 15 chrX 113250647 113250765 -63723375 + MLT1D LTR MaLR 396 505 0 4827 230 71 22 chrX 113251819 113251872 -63722268 - L1MC/D LINE L1 -607 6029 5980 1882 134 4 4 chrX 113251872 113252148 -63721992 + AluJo SINE Alu 1 276 -36 656 24 12 0 chrX 113252150 113252232 -63721908 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 4827 230 71 22 chrX 113252232 113252850 -63721290 - L1MC/D LINE L1 -656 5980 5394 225 0 0 0 chrX 113252850 113252875 -63721265 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 4827 230 71 22 chrX 113252875 113253669 -63720471 - L1MC/D LINE L1 -1242 5394 4437 933 131 8 0 chrX 113253669 113253799 -63720341 + FLAM_C SINE Alu 2 132 -1 4827 230 71 22 chrX 113253799 113254120 -63720020 - L1MC/D LINE L1 -2199 4437 4133 7324 117 25 4 chrX 113254132 113255586 -63718554 - L1MA3 LINE L1 0 6305 4819 6438 87 7 2 chrX 113255584 113256459 -63717681 + L1PA14 LINE L1 5279 6157 -4 * 8765 136 17 46 chrX 113256462 113258836 -63715304 - L1MA8 LINE L1 -185 6106 3780 3876 116 14 215 chrX 113258836 113260102 -63714038 + pTR5 LTR ERV1 1125 2606 0 1725 225 197 55 chrX 113260105 113260766 -63713374 - L1MDa LINE L1 -5613 927 18 360 345 95 6 chrX 113261004 113261172 -63712968 + MER5A DNA MER1_type 7 189 0 771 340 83 56 chrX 113261172 113261461 -63712679 - L3 LINE CR1 -912 665 386 2497 77 0 6 chrX 113261461 113261774 -63712366 + AluY SINE Alu 1 311 0 771 340 83 56 chrX 113261774 113262095 -63712045 - L3 LINE CR1 -1191 386 38 573 230 191 7 chrX 113262183 113262335 -63711805 + MER5A DNA MER1_type 10 189 0 2283 96 36 0 chrX 113262680 113262981 -63711159 - AluSx SINE Alu 0 312 1 1964 229 73 15 chrX 113263648 113264460 -63709680 - L1MEc LINE L1 -3302 2913 2067 713 230 35 0 chrX 113264463 113264637 -63709503 + L1M4 LINE L1 2396 2575 -3571 1051 216 61 90 chrX 113264677 113264719 -63709421 - L1MEc LINE L1 -4333 2063 2021 1654 191 3 0 chrX 113264719 113265012 -63709128 - AluJb SINE Alu -18 294 1 1051 216 61 90 chrX 113265012 113265377 -63708763 - L1MEc LINE L1 -4375 2021 1668 3090 229 38 2 chrX 113265377 113266005 -63708135 + MER82 DNA MER2_type 2 652 -1 1051 216 61 90 chrX 113266005 113266041 -63708099 - L1MEc LINE L1 -4728 1668 1632 232 275 66 0 chrX 113266094 113266185 -63707955 - L1MEc LINE L1 -6249 147 51 2025 166 52 41 chrX 113266210 113266761 -63707379 + MLT2A2 LTR ERVL 1 554 0 304 276 133 0 chrX 113267167 113267265 -63706875 - MER81 DNA DNA 0 114 4 333 193 24 12 chrX 113267265 113267348 -63706792 + AluYb8 SINE Alu 225 308 0 2047 148 84 60 chrX 113267369 113267765 -63706375 - L1MC5 LINE L1 -381 7580 7168 6110 60 60 4 chrX 113267765 113268504 -63705636 - LTR17 LTR ERV1 0 780 1 2047 148 84 60 chrX 113268504 113268619 -63705521 - L1MC5 LINE L1 -793 7168 7057 721 91 0 10 chrX 113268657 113268756 -63705384 + MER4A LTR ERV1 1 98 -566 1878 126 169 39 chrX 113268756 113269112 -63705028 + MER4A LTR ERV1 261 662 -2 2655 135 31 73 chrX 113269118 113269726 -63704414 + MER4A-int LTR ERV1 2 834 -5764 1519 243 65 8 chrX 113269766 113270133 -63704007 + MER4A-int LTR ERV1 1845 2232 -4099 1825 91 0 8 chrX 113270135 113270377 -63703763 + MER4B-int LTR ERV1 194 433 -6325 778 129 0 26 chrX 113270375 113270491 -63703649 - MER4B-int LTR ERV1 -6214 544 432 * 872 101 47 0 chrX 113270488 113270617 -63703523 + MER4B-int LTR ERV1 1015 1149 -5609 531 0 0 0 chrX 113270617 113270676 -63703464 + (TG)n Simple_repeat Simple_repeat 2 60 0 4689 72 56 11 chrX 113270677 113271396 -63702744 + MER4B-int LTR ERV1 1745 2495 -4103 1294 171 75 4 chrX 113271397 113271636 -63702504 - LTR8 LTR ERV1 -435 256 1 1009 78 20 20 chrX 113271636 113271789 -63702351 + MER4A-int LTR ERV1 2737 2889 -3709 1233 146 0 44 chrX 113271791 113271996 -63702144 + AluSg/x SINE Alu 117 312 0 1558 177 40 27 chrX 113271998 113272371 -63701769 + MER4A-int LTR ERV1 3304 3681 -2917 * 8932 92 52 16 chrX 113272370 113273746 -63700394 + MER4A-int LTR ERV1 3837 5262 -1336 7148 94 36 39 chrX 113273748 113274042 -63700098 + MER4A-int LTR ERV1 5498 5791 -807 1878 148 13 16 chrX 113274042 113274347 -63699793 - AluSx SINE Alu -8 304 1 7148 94 36 39 chrX 113274347 113274644 -63699496 + MER4A-int LTR ERV1 5791 6087 -511 2599 65 0 0 chrX 113274644 113274951 -63699189 - AluY SINE Alu -4 307 1 7148 94 36 39 chrX 113274951 113275262 -63698878 + MER4A-int LTR ERV1 6087 6400 -198 1935 119 6 53 chrX 113275262 113275581 -63698559 - AluSx SINE Alu -8 304 1 7148 94 36 39 chrX 113275581 113275778 -63698362 + MER4A-int LTR ERV1 6400 6596 -2 703 82 10 10 chrX 113275786 113275884 -63698256 + MER4A LTR ERV1 1 98 -566 1906 112 157 82 chrX 113275884 113276260 -63697880 + MER4A LTR ERV1 261 664 0 539 303 62 19 chrX 113276363 113276670 -63697470 + HAL1 LINE L1 1170 1489 -1018 2744 86 57 39 chrX 113276724 113277164 -63696976 - LTR7 LTR ERV1 -2 448 1 2654 96 44 34 chrX 113277164 113277759 -63696381 - HERVH LTR ERV1 0 7713 5600 4344 155 3 1 chrX 113277760 113278431 -63695709 - HERVH LTR ERV1 -2564 5149 4478 3448 106 6 2 chrX 113278427 113278927 -63695213 - HERVH LTR ERV1 -3720 3993 3492 * 920 135 20 0 chrX 113278917 113279065 -63695075 - HERVH LTR ERV1 -4423 3290 3140 * 20826 88 26 6 chrX 113279059 113281989 -63692151 - HERVH LTR ERV1 -4726 2987 1 2754 98 63 21 chrX 113281991 113282421 -63691719 - LTR7 LTR ERV1 -2 448 1 624 244 69 61 chrX 113282433 113282695 -63691445 + HAL1 LINE L1 1555 1818 -689 620 235 158 55 chrX 113283524 113283796 -63690344 - L2 LINE L2 0 3313 3014 1554 92 0 15 chrX 113283824 113284030 -63690110 - AluSp SINE Alu -7 306 104 198 328 69 0 chrX 113285119 113285177 -63688963 - L2 LINE L2 -5 3308 3247 617 313 60 0 chrX 113285178 113285344 -63688796 - MER91A DNA MER1_type 0 196 21 222 321 0 0 chrX 113286428 113286484 -63687656 + MIR SINE MIR 22 77 -185 503 266 154 19 chrX 113286520 113286734 -63687406 + MIR SINE MIR 20 262 0 754 250 23 0 chrX 113287675 113287847 -63686293 + MIR SINE MIR 82 257 -5 303 294 126 24 chrX 113288134 113288389 -63685751 + L1MC4a LINE L1 5637 5917 -1891 3923 92 120 2 chrX 113288389 113288956 -63685184 - MER51A LTR ERV1 0 634 1 273 29 0 0 chrX 113288972 113289006 -63685134 + (TG)n Simple_repeat Simple_repeat 2 35 0 360 0 0 0 chrX 113289017 113289057 -63685083 + (CA)n Simple_repeat Simple_repeat 2 41 0 3891 201 39 7 chrX 113289287 113290100 -63684040 - L1MC4a LINE L1 0 7808 6970 568 237 102 16 chrX 113290098 113290284 -63683856 - L1MC4a LINE L1 -2305 5503 5302 * 288 226 86 69 chrX 113290327 113290515 -63683625 - L1 LINE L1 -886 5260 5070 662 136 68 0 chrX 113290536 113290639 -63683501 - AluSc SINE Alu -2 307 198 6529 130 135 116 chrX 113290639 113292287 -63681853 + pTR5 LTR ERV1 741 2419 -19 303 212 28 15 chrX 113292288 113292363 -63681777 - FRAM/FAM SINE Alu -88 78 11 5195 148 33 31 chrX 113292365 113293486 -63680654 + pTR5 LTR ERV1 745 2025 -413 391 214 10 0 chrX 113293486 113293584 -63680556 + LTR30 LTR ERV1 544 642 -80 1529 84 4 22 chrX 113293587 113293812 -63680328 + pTR5 LTR ERV1 172 392 -2046 809 169 8 0 chrX 113293844 113293968 -63680172 - FLAM_C SINE Alu -8 125 1 403 297 7 7 chrX 113293968 113294106 -63680034 - L1 LINE L1 -1101 5045 4908 2085 141 147 5 chrX 113294232 113294607 -63679533 + MSTC LTR MaLR 1 428 0 314 279 118 82 chrX 113294821 113294966 -63679174 - L1MC4a LINE L1 -1849 5959 5821 1790 179 6 19 chrX 113294966 113295278 -63678862 - AluJo SINE Alu -4 308 1 314 279 118 82 chrX 113295278 113295412 -63678728 - L1MC4a LINE L1 -1987 5821 5670 1030 276 25 4 chrX 113295570 113295849 -63678291 + L1ME3A LINE L1 5527 5811 -359 2780 177 108 17 chrX 113295853 113296428 -63677712 + Charlie1a DNA MER1_type 7 633 -822 815 177 15 0 chrX 113296429 113296559 -63677581 + AluJo SINE Alu 3 134 -178 1282 165 64 23 chrX 113296574 113296840 -63677300 + Charlie1a DNA MER1_type 626 902 -553 2905 190 56 46 chrX 113296842 113297113 -63677027 - L1ME1 LINE L1 -7 6159 5892 2307 85 0 3 chrX 113297113 113297406 -63676734 + AluY SINE Alu 1 292 -19 2905 190 56 46 chrX 113297406 113297808 -63676332 - L1ME1 LINE L1 -274 5892 5479 2304 244 102 6 chrX 113297795 113298442 -63675698 - L1MEc LINE L1 -5670 726 18 * 338 320 30 10 chrX 113298444 113298544 -63675596 - MIR SINE MIR -78 130 29 354 98 0 0 chrX 113299367 113299418 -63674722 + (TA)n Simple_repeat Simple_repeat 2 52 0 259 311 62 106 chrX 113299495 113299881 -63674259 - L2 LINE L2 -1 3271 2908 216 0 0 0 chrX 113299881 113299905 -63674235 + (TG)n Simple_repeat Simple_repeat 1 24 0 259 311 62 106 chrX 113299905 113299988 -63674152 - L2 LINE L2 -364 2908 2823 1150 120 95 16 chrX 113300406 113300528 -63673612 + Charlie1a DNA MER1_type 1195 1306 -1455 2179 81 0 0 chrX 113300528 113300788 -63673352 - AluSq SINE Alu -53 260 1 1150 120 95 16 chrX 113300788 113300907 -63673233 + Charlie1a DNA MER1_type 1306 1455 0 1356 186 79 25 chrX 113300927 113301244 -63672896 + L1ME3A LINE L1 5811 6144 -26 217 242 136 0 chrX 113301287 113301353 -63672787 + MIR SINE MIR 57 131 -131 * 220 287 101 78 chrX 113301342 113301471 -63672669 - L2 LINE L2 -2 3270 3139 2658 133 37 33 chrX 113301473 113301903 -63672237 - MSTB1 LTR MaLR 0 432 1 2328 84 3 0 chrX 113301926 113302222 -63671918 + AluSp SINE Alu 1 297 -16 205 245 20 0 chrX 113302316 113302365 -63671775 - L2 LINE L2 -236 3036 2987 754 172 19 93 chrX 113302384 113302599 -63671541 + L2 LINE L2 2296 2494 -820 3960 203 54 35 chrX 113302600 113303222 -63670918 + MER69 DNA AcHobo 1 646 -1880 1725 116 0 24 chrX 113303222 113303472 -63670668 + AluJb SINE Alu 46 289 -23 3960 203 54 35 chrX 113303472 113303716 -63670424 + MER69 DNA AcHobo 646 884 -1642 1714 277 14 36 chrX 113303842 113304702 -63669438 + L2 LINE L2 2481 3313 0 746 327 78 13 chrX 113304711 113305106 -63669034 - L2 LINE L2 -342 2972 2552 614 319 5 5 chrX 113305157 113305373 -63668767 - L2 LINE L2 -1295 2019 1804 195 298 21 0 chrX 113305377 113305424 -63668716 + L2 LINE L2 3207 3254 -18 897 171 0 12 chrX 113305860 113306024 -63668116 + L1MB3 LINE L1 6022 6183 0 2032 101 40 0 chrX 113306054 113306332 -63667808 + AluSq SINE Alu 1 289 -24 204 40 0 0 chrX 113306332 113306357 -63667783 + (GGAGAA)n Simple_repeat Simple_repeat 5 29 0 1884 252 71 12 chrX 113306403 113307196 -63666944 - L2 LINE L2 -1 3312 2487 5038 198 94 23 chrX 113307197 113308100 -63666040 - MER69 DNA AcHobo -3 2523 1686 3786 130 22 20 chrX 113308100 113308474 -63665666 + L1MB1 LINE L1 5569 5946 -222 1795 166 21 0 chrX 113308474 113308763 -63665377 + AluJo SINE Alu 1 295 -17 3786 130 22 20 chrX 113308763 113308987 -63665153 + L1MB1 LINE L1 5946 6168 0 5038 198 94 23 chrX 113308987 113309636 -63664504 - MER69 DNA AcHobo -840 1686 7 1960 225 90 15 chrX 113309638 113310228 -63663912 - L2 LINE L2 -815 2499 1866 3919 93 11 0 chrX 113310246 113310831 -63663309 + L1PB3 LINE L1 5196 5785 -369 3422 77 21 2 chrX 113310831 113311258 -63662882 + L1PA13 LINE L1 5710 6147 -16 2749 99 2 37 chrX 113311269 113311643 -63662497 + L1PB3 LINE L1 5767 6128 -26 2821 130 16 26 chrX 113311643 113312073 -63662067 - MSTB LTR MaLR 0 426 1 2749 99 2 37 chrX 113312073 113312100 -63662040 + L1PB3 LINE L1 6128 6154 0 315 283 36 22 chrX 113312101 113312239 -63661901 + L1MB7 LINE L1 6045 6184 0 817 281 123 29 chrX 113312288 113312808 -63661332 - L1MC4a LINE L1 -1921 5887 5319 241 257 27 14 chrX 113314341 113314415 -63659725 + MER77 LTR ERV1 491 565 -40 269 310 26 26 chrX 113314625 113314738 -63659402 + MLT1K LTR MaLR 137 249 -339 232 252 37 28 chrX 113315084 113315191 -63658949 + L1P LINE L1 4924 5031 -1115 644 165 28 0 chrX 113315217 113315362 -63658778 - FLAM_C SINE Alu 0 152 5 789 276 110 45 chrX 113315534 113315579 -63658561 + L1MC4a LINE L1 5254 5295 -2513 2219 101 0 3 chrX 113315579 113315885 -63658255 + AluSq SINE Alu 1 305 -8 789 276 110 45 chrX 113315885 113316441 -63657699 + L1MC4a LINE L1 5295 5894 -1914 27 49 0 0 chrX 113316608 113316649 -63657491 + AT_rich Low_complexity Low_complexity 1 41 0 2110 105 0 16 chrX 113316675 113316981 -63657159 + AluSx SINE Alu 1 301 -11 22 0 0 0 chrX 113316987 113317009 -63657131 + AT_rich Low_complexity Low_complexity 1 22 0 385 306 107 15 chrX 113317009 113317215 -63656925 + L1ME4a LINE L1 4524 4748 -1398 647 274 39 76 chrX 113317228 113317585 -63656555 + L1ME4a LINE L1 5690 6033 -88 1766 117 26 11 chrX 113317701 113317994 -63656146 + AluSx SINE Alu 19 312 0 231 185 138 31 chrX 113318081 113318146 -63655994 - L2 LINE L2 -1 3271 3200 687 229 21 0 chrX 113319621 113319765 -63654375 + L1PB4 LINE L1 6001 6147 -9 555 255 112 11 chrX 113319789 113319977 -63654163 + MIR SINE MIR 44 250 -12 261 284 0 25 chrX 113320172 113320253 -63653887 + MIR SINE MIR 53 131 -131 204 40 0 0 chrX 113320288 113320313 -63653827 + (TCTCCC)n Simple_repeat Simple_repeat 2 26 0 6526 62 5 39 chrX 113320313 113321988 -63652152 + SVA Other Other 3 1386 0 338 155 52 0 chrX 113322067 113322125 -63652015 + MLT1C LTR MaLR 2 62 -405 530 63 0 0 chrX 113322126 113322189 -63651951 - MER51A LTR ERV1 0 634 572 309 206 0 0 chrX 113322189 113322252 -63651888 - L1P LINE L1 -1278 4868 4806 3267 108 165 0 chrX 113322252 113322796 -63651344 - MER51A LTR ERV1 0 634 1 1719 186 65 13 chrX 113322802 113323184 -63650956 + MLT1C LTR MaLR 66 467 0 1308 175 38 110 chrX 113323833 113323906 -63650234 + MER58B DNA MER1_type 3 80 -2340 369 109 0 0 chrX 113323906 113323961 -63650179 + (CA)n Simple_repeat Simple_repeat 2 56 0 1308 175 38 110 chrX 113323961 113324110 -63650030 + MER58B DNA MER1_type 80 192 -2228 3504 186 19 8 chrX 113324110 113324727 -63649413 - MLT1E3 LTR MaLR 0 624 1 1308 175 38 110 chrX 113324727 113324868 -63649272 + MER58B DNA MER1_type 192 341 0 285 29 0 0 chrX 113325014 113325048 -63649092 + (CA)n Simple_repeat Simple_repeat 1 34 0 240 35 0 0 chrX 113325078 113325107 -63649033 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2076 98 0 17 chrX 113325109 113325396 -63648744 - AluSx SINE Alu -30 282 1 1935 150 0 7 chrX 113325529 113325836 -63648304 + AluSx SINE Alu 1 305 -7 828 294 42 45 chrX 113325900 113326228 -63647912 - L1ME3A LINE L1 -224 5946 5619 2291 90 3 3 chrX 113326228 113326538 -63647602 + AluSx SINE Alu 1 310 -2 828 294 42 45 chrX 113326538 113326653 -63647487 - L1ME3A LINE L1 -551 5619 5505 2244 82 0 16 chrX 113326653 113326958 -63647182 + AluSc SINE Alu 1 300 -9 828 294 42 45 chrX 113326958 113327273 -63646867 - L1ME3A LINE L1 -665 5505 5257 1249 251 68 16 chrX 113327299 113327681 -63646459 - L2 LINE L2 0 3313 2912 1104 245 165 42 chrX 113327681 113327868 -63646272 - L1ME3A LINE L1 -913 5233 5070 2157 98 3 0 chrX 113327868 113328163 -63645977 + AluSq SINE Alu 1 296 -17 1104 245 165 42 chrX 113328163 113328232 -63645908 - L1ME3A LINE L1 -1076 5070 5011 2206 105 0 0 chrX 113328232 113328538 -63645602 + AluY SINE Alu 1 306 -5 1104 245 165 42 chrX 113328538 113329036 -63645104 - L1ME3A LINE L1 -1135 5011 4385 515 267 129 0 chrX 113329048 113329250 -63644890 - L1ME3A LINE L1 -1816 4330 4103 779 308 66 29 chrX 113329254 113329771 -63644369 - L1ME3A LINE L1 -2260 3886 3351 2045 116 7 0 chrX 113329832 113330125 -63644015 - AluSx SINE Alu -17 295 1 6594 89 3 8 chrX 113330331 113331695 -63642445 - L1PA13 LINE L1 -1 6162 4806 1289 77 11 6 chrX 113331695 113331876 -63642264 - MER51A LTR ERV1 0 634 453 1097 106 0 19 chrX 113331876 113332029 -63642111 + L1PA10 LINE L1 6003 6154 -14 2325 82 0 0 chrX 113332029 113332321 -63641819 - AluSx SINE Alu -20 292 1 1442 208 35 14 chrX 113332335 113332623 -63641517 + MLT1C LTR MaLR 174 467 0 1122 258 99 45 chrX 113332771 113332947 -63641193 - L2 LINE L2 0 3313 3148 2081 138 0 0 chrX 113332947 113333259 -63640881 + AluSq SINE Alu 1 312 -1 1122 258 99 45 chrX 113333259 113333859 -63640281 - L2 LINE L2 -165 3148 2104 878 269 9 0 chrX 113333861 113334077 -63640063 + LTR16B LTR ERVL 247 464 0 6347 241 73 9 chrX 113334078 113335845 -63638295 + HERV16 LTR ERVL 2 1949 -3047 2328 210 26 4 chrX 113335895 113336348 -63637792 + HERV16 LTR ERVL 936 1398 -3598 1539 327 53 3 chrX 113336344 113336949 -63637191 + HERV16 LTR ERVL 4353 4987 -777 * 782 233 66 28 chrX 113336960 113337069 -63637071 + L1MCa LINE L1 2096 2199 -4227 1833 154 0 3 chrX 113337069 113337361 -63636779 + AluJb SINE Alu 1 291 -21 782 233 66 28 chrX 113337361 113337538 -63636602 + L1MCa LINE L1 2199 2393 -4033 * 844 191 59 59 chrX 113337533 113337640 -63636500 + L1MA4 LINE L1 6029 6135 -165 2306 77 0 0 chrX 113337640 113337949 -63636191 + AluSx SINE Alu 1 309 0 844 191 59 59 chrX 113337949 113338112 -63636028 + L1MA4 LINE L1 6134 6300 0 802 203 5 35 chrX 113338107 113338309 -63635831 + L1MCa LINE L1 2407 2602 -4005 * 960 89 0 0 chrX 113338312 113338436 -63635704 + AluJo SINE Alu 11 134 -178 305 290 73 9 chrX 113338436 113338464 -63635676 + L1MCa LINE L1 2552 2577 -3897 221 75 25 0 chrX 113338464 113338504 -63635636 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 305 290 73 9 chrX 113338504 113338598 -63635542 + L1MCa LINE L1 2577 2721 -3753 1653 169 14 3 chrX 113339328 113339624 -63634516 - AluJb SINE Alu -13 299 1 22 35 0 0 chrX 113339740 113339769 -63634371 + AT_rich Low_complexity Low_complexity 1 29 0 703 214 87 18 chrX 113339887 113340116 -63634024 + L1MCa LINE L1 2647 2891 -3535 381 293 8 0 chrX 113340116 113340239 -63633901 + HERV16 LTR ERVL 4810 4933 -63 992 316 19 22 chrX 113340417 113340778 -63633362 + LTR16B LTR ERVL 105 464 0 2280 74 0 7 chrX 113340971 113341270 -63632870 + AluY SINE Alu 2 298 -13 2318 125 82 11 chrX 113341664 113342040 -63632100 + MSTB1 LTR MaLR 1 403 -29 1392 165 0 4 chrX 113342040 113342270 -63631870 - AluSg/x SINE Alu -2 308 80 2104 128 0 3 chrX 113342276 113342589 -63631551 - AluSx SINE Alu 0 312 1 781 250 92 45 chrX 113342624 113342990 -63631150 - MLT1J2 LTR MaLR -5 428 68 231 325 0 0 chrX 113343176 113343256 -63630884 + L2 LINE L2 2395 2474 -840 2241 94 0 0 chrX 113343276 113343573 -63630567 + AluSq SINE Alu 1 297 -16 1562 233 45 62 chrX 113343975 113344115 -63630025 - L2 LINE L2 0 3313 3172 2166 101 7 3 chrX 113344115 113344413 -63629727 + AluSx SINE Alu 1 299 -13 1562 233 45 62 chrX 113344413 113344912 -63629228 - L2 LINE L2 -141 3172 2692 1899 125 24 0 chrX 113344915 113345204 -63628936 + AluSg SINE Alu 1 296 -14 454 329 7 7 chrX 113345204 113345356 -63628784 - L2 LINE L2 -894 2420 2269 8044 120 81 113 chrX 113345356 113347101 -63627039 - pTR5 LTR ERV1 -10 2428 741 224 211 0 0 chrX 113347103 113347141 -63626999 - L2 LINE L2 -1034 2280 2243 539 216 0 20 chrX 113347141 113347243 -63626897 - Tigger7 DNA MER2_type 0 2491 2392 1412 202 40 0 chrX 113347243 113347495 -63626645 - Tigger7 DNA MER2_type -469 264 3 856 208 34 6 chrX 113347497 113347675 -63626465 - L2 LINE L2 -1070 2244 2062 3258 122 110 18 chrX 113348060 113348632 -63625508 + MER51A LTR ERV1 1 625 -9 647 274 93 80 chrX 113348807 113349271 -63624869 + L2 LINE L2 273 742 -2572 1498 188 44 3 chrX 113349535 113349828 -63624312 - AluJo SINE Alu -7 305 1 1110 212 14 23 chrX 113349856 113350150 -63623990 + L1MC4a LINE L1 5652 5822 -339 * 1971 218 65 16 chrX 113350126 113350243 -63623897 + L1ME1 LINE L1 5632 5742 -424 920 207 125 61 chrX 113350243 113350540 -63623600 + MLT1A1 LTR MaLR 1 325 -40 2203 75 0 7 chrX 113350540 113350850 -63623290 + AluSg SINE Alu 1 308 0 920 207 125 61 chrX 113350850 113350894 -63623246 + MLT1A1 LTR MaLR 325 365 0 1971 218 65 16 chrX 113350894 113351272 -63622868 + L1ME1 LINE L1 5742 6151 -15 2254 87 7 0 chrX 113351393 113351693 -63622447 + AluSp SINE Alu 1 302 -11 1784 147 0 18 chrX 113351703 113351989 -63622151 + AluJo SINE Alu 2 282 -30 195 69 0 0 chrX 113351992 113352021 -63622119 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1488 125 9 30 chrX 113352092 113352324 -63621816 - THE1B LTR MaLR 0 364 138 353 21 0 21 chrX 113352744 113352791 -63621349 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 831 292 76 48 chrX 113352791 113353053 -63621087 - L2 LINE L2 -6 3307 3031 2348 48 10 0 chrX 113353053 113353344 -63620796 - AluY SINE Alu -17 294 1 831 292 76 48 chrX 113353344 113353437 -63620703 - L2 LINE L2 -282 3031 2942 1686 226 77 11 chrX 113353439 113353816 -63620324 + MER20B DNA MER1_type 1 402 -381 2044 97 29 23 chrX 113353836 113354144 -63619996 + AluSx SINE Alu 1 310 -2 197 32 0 32 chrX 113354282 113354313 -63619827 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1775 130 21 18 chrX 113354353 113354490 -63619650 + AluSx SINE Alu 1 136 -176 2314 79 0 3 chrX 113354490 113354793 -63619347 + AluY SINE Alu 1 302 -9 1775 130 21 18 chrX 113354793 113354940 -63619200 + AluSx SINE Alu 136 286 -26 228 184 0 0 chrX 113355108 113355157 -63618983 + GA-rich Low_complexity Low_complexity 3 51 0 2384 43 7 3 chrX 113356025 113356324 -63617816 - AluY SINE Alu -11 300 1 2123 111 3 7 chrX 113356351 113356648 -63617492 + AluSx SINE Alu 1 296 -16 351 274 105 16 chrX 113357387 113357511 -63616629 + MIR SINE MIR 5 139 -123 620 215 47 36 chrX 113357569 113357750 -63616390 - MIR SINE MIR -75 133 2 241 208 146 52 chrX 113357750 113357839 -63616301 + MIR SINE MIR 139 236 -26 218 339 0 28 chrX 113357919 113358028 -63616112 + G-rich Low_complexity Low_complexity 3 108 0 262 268 172 54 chrX 113359993 113360198 -63613942 - MIR3 SINE MIR -48 214 3 200 294 51 76 chrX 113360204 113360401 -63613739 - L2 LINE L2 -3 3310 3119 249 329 0 0 chrX 113360750 113360826 -63613314 - L2 LINE L2 -646 2668 2593 342 223 67 21 chrX 113361166 113361266 -63612874 - MIR SINE MIR -99 109 17 220 309 15 0 chrX 113362038 113362106 -63612034 + L2 LINE L2 3240 3308 -5 2296 84 3 0 chrX 113362241 113362537 -63611603 - AluSg SINE Alu -13 297 1 4752 143 81 53 chrX 113362687 113362948 -63611192 - MER21A LTR ERV1 0 931 679 2058 113 3 10 chrX 113362948 113363250 -63610890 - AluSx SINE Alu -12 300 1 4752 143 81 53 chrX 113363250 113363672 -63610468 - MER21A LTR ERV1 -252 679 214 1675 81 36 0 chrX 113363672 113363894 -63610246 + MER30 DNA MER1_type 1 230 0 4752 143 81 53 chrX 113363894 113364115 -63610025 - MER21A LTR ERV1 -717 214 1 1571 153 0 39 chrX 113364426 113364707 -63609433 + AluJb SINE Alu 1 270 -42 1879 111 0 0 chrX 113364732 113364994 -63609146 + AluSx SINE Alu 34 295 -17 392 258 66 93 chrX 113366043 113366377 -63607763 + L2 LINE L2 1912 2236 -1078 390 285 265 15 chrX 113366394 113366594 -63607546 - MIR SINE MIR 0 262 13 470 298 128 63 chrX 113366628 113367556 -63606584 + L2 LINE L2 2291 3272 0 409 286 64 49 chrX 113367984 113368099 -63606041 - L1MC4 LINE L1 -11 8031 7910 1815 113 6 85 chrX 113368099 113368455 -63605685 - AluSx SINE Alu 0 312 1 409 286 64 49 chrX 113368455 113368542 -63605598 - L1MC4 LINE L1 -132 7910 7826 2137 109 0 0 chrX 113368571 113368865 -63605275 - AluSq SINE Alu -19 294 1 535 185 163 0 chrX 113368874 113369009 -63605131 - L1ME2 LINE L1 0 6164 6008 2093 122 0 3 chrX 113369555 113369867 -63604273 + AluSx SINE Alu 1 311 -1 2401 70 3 0 chrX 113370168 113370468 -63603672 + AluSp SINE Alu 1 301 -12 1090 62 0 20 chrX 113370698 113370844 -63603296 + L1PA10 LINE L1 6025 6167 -1 2046 120 3 7 chrX 113371326 113371625 -63602515 - AluSx SINE Alu -14 298 1 21 57 0 0 chrX 113371784 113371819 -63602321 + AT_rich Low_complexity Low_complexity 1 35 0 1662 148 4 4 chrX 113371819 113372082 -63602058 + AluJo SINE Alu 34 296 -16 298 102 85 0 chrX 113372092 113372151 -63601989 + L1MB3 LINE L1 6120 6183 0 * 1160 252 114 59 chrX 113372148 113372373 -63601767 - L1ME4a LINE L1 -16 6105 5894 2310 80 0 3 chrX 113372373 113372674 -63601466 + AluSx SINE Alu 1 300 -12 1160 252 114 59 chrX 113372674 113373324 -63600816 - L1ME4a LINE L1 -227 5894 5180 422 92 0 0 chrX 113373340 113373405 -63600735 - AluSq SINE Alu -8 304 240 880 107 0 0 chrX 113373406 113373527 -63600613 - AluSq SINE Alu -108 205 85 1787 129 10 58 chrX 113373704 113373864 -63600276 - AluJb SINE Alu -17 295 156 2247 84 0 16 chrX 113373864 113374172 -63599968 - AluSc SINE Alu -6 303 1 1787 129 10 58 chrX 113374172 113374321 -63599819 - AluJb SINE Alu -156 156 1 2197 108 0 0 chrX 113374362 113374659 -63599481 + AluSx SINE Alu 1 297 -15 1784 140 7 26 chrX 113374672 113374980 -63599160 + AluJb SINE Alu 4 305 -7 330 293 73 59 chrX 113374988 113375166 -63598974 - L1ME4a LINE L1 -1167 4979 4744 2277 86 0 3 chrX 113375166 113375468 -63598672 - AluSg SINE Alu -9 301 1 330 293 73 59 chrX 113375468 113375584 -63598556 - L1ME4a LINE L1 -1402 4744 4631 329 187 13 13 chrX 113375696 113375771 -63598369 + MER116 DNA Mariner 1 75 -5 2150 114 0 25 chrX 113376085 113376401 -63597739 + AluSx SINE Alu 1 308 -4 514 306 133 39 chrX 113378480 113378915 -63595225 + L2 LINE L2 2165 2640 -674 1105 200 32 14 chrX 113378943 113379163 -63594977 - MIR SINE MIR -17 245 22 1878 142 0 31 chrX 113379239 113379557 -63594583 - AluJo SINE Alu -4 308 1 2110 127 0 16 chrX 113379774 113380090 -63594050 + AluSx SINE Alu 1 311 -1 481 205 213 0 chrX 113380252 113380379 -63593761 - Charlie8 DNA MER1_type -2217 200 47 180 303 40 26 chrX 113380476 113380552 -63593588 + L2 LINE L2 2919 2995 -277 2240 75 3 3 chrX 113380871 113381164 -63592976 - AluSx SINE Alu -19 293 1 861 191 19 107 chrX 113381933 113382195 -63591945 + MER8 DNA MER2_type 1 239 0 2168 107 3 0 chrX 113382197 113382506 -63591634 + AluSx SINE Alu 1 310 -2 1393 49 0 0 chrX 113382691 113382855 -63591285 + U1 snRNA snRNA 1 164 -1 2350 69 3 0 chrX 113382882 113383185 -63590955 + AluY SINE Alu 1 304 -7 747 234 106 38 chrX 113383197 113383432 -63590708 - MIR SINE MIR 0 262 12 1895 179 52 3 chrX 113383621 113383968 -63590172 - MLT1A1 LTR MaLR 0 365 2 549 262 77 11 chrX 113385214 113385397 -63588743 + MIR SINE MIR 53 247 -15 1957 121 17 0 chrX 113385490 113385780 -63588360 + AluSx SINE Alu 1 295 -17 202 164 0 73 chrX 113386767 113386822 -63587318 + T-rich Low_complexity Low_complexity 2 52 0 965 198 52 91 chrX 113387063 113387122 -63587018 - L1MC4a LINE L1 -1893 5915 5855 2173 106 7 0 chrX 113387122 113387414 -63586726 + AluSq SINE Alu 1 294 -19 965 198 52 91 chrX 113387414 113387635 -63586505 - L1MC4a LINE L1 -1953 5855 5647 2119 113 55 25 chrX 113387635 113387961 -63586179 + MER1B DNA MER1_type 2 337 0 965 198 52 91 chrX 113387961 113388008 -63586132 - L1MC4a LINE L1 -2161 5647 5600 2141 84 35 0 chrX 113388014 113388299 -63585841 - AluSc SINE Alu -14 295 1 365 283 40 93 chrX 113388470 113388696 -63585444 - L2 LINE L2 -1 3312 3099 456 300 40 20 chrX 113388845 113388995 -63585145 - MIR3 SINE MIR -7 201 49 1032 234 15 41 chrX 113389208 113389476 -63584664 - MIR SINE MIR 0 262 6 832 207 11 17 chrX 113389545 113389724 -63584416 + MER5B DNA MER1_type 1 178 0 453 330 28 33 chrX 113389968 113390183 -63583957 + MIR SINE MIR 1 214 -48 2029 119 23 0 chrX 113390185 113390526 -63583614 + AluSx SINE Alu 1 348 0 1687 112 8 4 chrX 113390821 113391063 -63583077 + AluSq SINE Alu 1 243 -70 665 177 153 71 chrX 113391151 113391433 -63582707 + L1MC5 LINE L1 7609 7913 -48 2119 107 13 0 chrX 113391456 113391755 -63582385 + AluSx SINE Alu 1 303 -9 2056 87 42 7 chrX 113391778 113392064 -63582076 + AluSg1 SINE Alu 1 296 -13 1767 174 26 35 chrX 113392104 113392443 -63581697 - MLT2D LTR ERVL -78 336 1 189 347 132 19 chrX 113392571 113392784 -63581356 - L2 LINE L2 -554 2760 2524 1540 284 103 20 chrX 113392784 113393368 -63580772 - L2 LINE L2 -461 2853 2222 1978 131 6 22 chrX 113393468 113393788 -63580352 + 7SLRNA srpRNA srpRNA 1 315 -5 1837 115 3 51 chrX 113393788 113394084 -63580056 - AluSx SINE Alu -26 286 5 26 30 0 0 chrX 113394087 113394120 -63580020 + AT_rich Low_complexity Low_complexity 1 33 0 193 206 0 0 chrX 113394125 113394159 -63579981 - L2 LINE L2 -491 2823 2790 728 261 15 15 chrX 113394164 113394363 -63579777 - MER63A DNA MER1_type -8 202 4 44037 28 22 1 chrX 113394418 113400443 -63573697 - L1HS LINE L1 0 6155 3 370 318 55 50 chrX 113400661 113400757 -63573383 - L2 LINE L2 -528 2786 2692 2111 87 3 3 chrX 113400757 113401045 -63573095 + AluSx SINE Alu 1 288 -24 370 318 55 50 chrX 113401045 113401149 -63572991 - L2 LINE L2 -622 2692 2585 419 315 74 13 chrX 113401834 113401983 -63572157 - L2 LINE L2 0 3272 3115 2183 121 0 3 chrX 113402057 113402370 -63571770 - AluSx SINE Alu 0 312 1 1171 63 0 0 chrX 113402398 113402540 -63571600 - AluSg/x SINE Alu -12 300 159 293 0 27 0 chrX 113402666 113402703 -63571437 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1779 144 0 30 chrX 113402706 113403004 -63571136 - AluJb SINE Alu -23 289 1 574 250 91 78 chrX 113403251 113403373 -63570767 - MIR SINE MIR 0 262 143 2136 102 10 0 chrX 113403373 113403676 -63570464 + AluSq SINE Alu 1 306 -7 574 250 91 78 chrX 113403676 113403704 -63570436 - MIR SINE MIR -119 143 117 2146 113 0 10 chrX 113403704 113404015 -63570125 + AluSx SINE Alu 3 310 -2 574 250 91 78 chrX 113404015 113404095 -63570045 - MIR SINE MIR -145 117 28 328 386 23 6 chrX 113404533 113404709 -63569431 + MIR3 SINE MIR 3 181 -27 2210 103 3 0 chrX 113404830 113405131 -63569009 + AluSx SINE Alu 11 312 0 344 145 14 29 chrX 113405337 113405406 -63568734 + MIR SINE MIR 72 139 -69 416 313 88 14 chrX 113405690 113405837 -63568303 - L2 LINE L2 0 3272 3115 3941 222 124 39 chrX 113405857 113405907 -63568233 + L2 LINE L2 1776 1820 -1493 2166 112 0 0 chrX 113405907 113406203 -63567937 - AluSx SINE Alu -16 296 1 3941 222 124 39 chrX 113406203 113406257 -63567883 + L2 LINE L2 1820 1868 -1445 1838 153 0 7 chrX 113406257 113406557 -63567583 - AluJo SINE Alu -14 298 1 3941 222 124 39 chrX 113406557 113407857 -63566283 + L2 LINE L2 1868 3313 0 840 297 135 63 chrX 113407951 113408081 -63566059 - L2 LINE L2 -502 2812 2693 2231 111 0 0 chrX 113408081 113408388 -63565752 + AluSx SINE Alu 1 307 -5 2035 147 0 0 chrX 113408397 113408709 -63565431 + AluJb SINE Alu 1 312 0 840 297 135 63 chrX 113408709 113409191 -63564949 - L2 LINE L2 -628 2686 2145 472 260 68 73 chrX 113409292 113409484 -63564656 - L2 LINE L2 -1 3312 3122 301 319 11 11 chrX 113409482 113409573 -63564567 - MIR SINE MIR -152 110 20 * 2043 116 0 7 chrX 113409830 113410122 -63564018 + AluSx SINE Alu 1 290 -22 573 306 149 48 chrX 113410167 113410684 -63563456 - L2 LINE L2 -2491 823 255 186 71 0 0 chrX 113411442 113411470 -63562670 + (A)n Simple_repeat Simple_repeat 1 28 0 1672 153 49 0 chrX 113412483 113412770 -63561370 - AluJo SINE Alu -11 301 1 22 35 0 0 chrX 113413817 113413846 -63560294 + AT_rich Low_complexity Low_complexity 1 29 0 1918 95 11 0 chrX 113413846 113414109 -63560031 - AluSq SINE Alu -47 266 1 2096 109 3 7 chrX 113414631 113414933 -63559207 - AluSx SINE Alu -11 301 1 512 197 49 63 chrX 113415095 113415237 -63558903 - L2 LINE L2 -52 3261 3122 659 151 0 0 chrX 113415290 113415396 -63558744 - AluSg/x SINE Alu -8 301 196 361 278 10 0 chrX 113415408 113415505 -63558635 - L2 LINE L2 -243 3070 2973 729 81 10 0 chrX 113415507 113415606 -63558534 + HY3 scRNA scRNA 1 100 -1 1335 33 0 27 chrX 113415606 113415629 -63558511 + (GAAA)n Simple_repeat Simple_repeat 1 23 -509 2215 97 7 0 chrX 113415629 113415937 -63558203 + AluSg SINE Alu 1 310 0 1335 33 0 27 chrX 113415937 113415969 -63558171 + (GAAA)n Simple_repeat Simple_repeat 23 532 0 1335 33 0 27 chrX 113415969 113416153 -63557987 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2145 223 62 98 chrX 113416207 113416728 -63557412 - L2 LINE L2 -264 3008 2470 2071 118 0 35 chrX 113416728 113417041 -63557099 - AluSx SINE Alu -10 302 1 2145 223 62 98 chrX 113417041 113417247 -63556893 - L2 LINE L2 -802 2470 2312 2353 198 61 55 chrX 113417247 113417434 -63556706 + MLT1E2 LTR MaLR 2 186 -440 2406 106 0 0 chrX 113417434 113417737 -63556403 + AluSx SINE Alu 1 303 -9 2353 198 61 55 chrX 113417737 113418170 -63555970 + MLT1E2 LTR MaLR 186 626 0 2145 223 62 98 chrX 113418170 113418311 -63555829 - L2 LINE L2 -960 2312 2168 2246 114 3 0 chrX 113418392 113418690 -63555450 + AluSx SINE Alu 1 299 -13 1953 151 0 25 chrX 113419032 113419350 -63554790 + AluJo SINE Alu 1 310 -2 468 222 28 0 chrX 113419750 113419858 -63554282 - L1PB4 LINE L1 -8 6148 6038 21 0 0 0 chrX 113419885 113419906 -63554234 + AT_rich Low_complexity Low_complexity 1 21 0 2234 121 0 0 chrX 113419959 113420249 -63553891 + AluSx SINE Alu 1 290 -22 885 145 0 7 chrX 113420291 113420429 -63553711 + AluJo SINE Alu 91 227 -85 2468 199 44 43 chrX 113420432 113420700 -63553440 + L1ME1 LINE L1 5504 5770 -396 2467 97 0 3 chrX 113420700 113421009 -63553131 + AluSq SINE Alu 1 308 -5 2468 199 44 43 chrX 113421009 113421398 -63552742 + L1ME1 LINE L1 5770 6162 -4 1782 160 3 3 chrX 113421442 113421750 -63552390 - AluJb SINE Alu 0 308 1 842 299 36 13 chrX 113421780 113422004 -63552136 - MIR SINE MIR -31 231 3 1520 286 154 19 chrX 113422078 113422707 -63551433 - L3 LINE CR1 0 1577 864 479 60 15 0 chrX 113423090 113423157 -63550983 + (CA)n Simple_repeat Simple_repeat 2 69 0 22 35 0 0 chrX 113423186 113423215 -63550925 + AT_rich Low_complexity Low_complexity 1 29 0 2447 96 0 0 chrX 113423570 113423882 -63550258 - AluSx SINE Alu 0 312 1 2300 101 0 3 chrX 113424149 113424446 -63549694 + AluSq SINE Alu 1 296 -17 315 49 0 0 chrX 113424681 113424722 -63549418 + (CAT)n Simple_repeat Simple_repeat 2 42 0 984 179 0 0 chrX 113424736 113424881 -63549259 + FRAM SINE Alu 1 145 -31 800 216 156 27 chrX 113424918 113425219 -63548921 - L1MD3 LINE L1 -12 7983 7644 592 176 124 7 chrX 113426697 113426850 -63547290 + MER96B DNA MER1_type? 9 179 -238 243 143 179 0 chrX 113426909 113426965 -63547175 - MER58A DNA MER1_type -33 74 9 275 184 235 41 chrX 113426973 113427071 -63547069 + MER96B DNA MER1_type? 301 417 0 22 70 0 0 chrX 113427288 113427331 -63546809 + GC_rich Low_complexity Low_complexity 1 43 0 257 158 53 0 chrX 113430611 113430668 -63543472 + L1MB5 LINE L1 6112 6171 -3 2449 88 7 3 chrX 113430726 113431032 -63543108 - AluSc SINE Alu -2 307 1 28 0 0 0 chrX 113431041 113431069 -63543071 + AT_rich Low_complexity Low_complexity 1 28 0 2538 62 10 7 chrX 113431087 113431396 -63542744 - AluY SINE Alu -1 310 1 2033 130 11 0 chrX 113431396 113431673 -63542467 - AluSg SINE Alu -30 280 1 739 270 89 17 chrX 113432179 113432416 -63541724 + MIR SINE MIR 3 256 -6 634 197 36 36 chrX 113432439 113432576 -63541564 + MIR SINE MIR 25 161 -101 306 43 0 0 chrX 113432595 113432641 -63541499 - AluSx SINE Alu 0 300 255 2040 99 0 0 chrX 113432721 113432974 -63541166 - AluSx SINE Alu -57 255 3 255 230 23 69 chrX 113432984 113433071 -63541069 + MIR SINE MIR 160 242 -20 297 0 0 0 chrX 113434526 113434559 -63539581 + (T)n Simple_repeat Simple_repeat 1 33 0 371 313 8 23 chrX 113434584 113434715 -63539425 + MIR3 SINE MIR 79 207 -1 460 229 122 0 chrX 113435698 113435829 -63538311 + MER69 DNA AcHobo 1 147 -2379 768 177 0 0 chrX 113436080 113436210 -63537930 + MIR SINE MIR 100 229 -33 2240 121 0 0 chrX 113436250 113436547 -63537593 - AluSx SINE Alu -15 297 1 576 263 22 0 chrX 113437536 113437673 -63536467 - MIR SINE MIR -30 232 93 2362 90 0 0 chrX 113438221 113438510 -63535630 + AluSx SINE Alu 1 289 -23 2289 76 0 0 chrX 113438510 113438785 -63535355 + AluY SINE Alu 36 311 0 690 309 207 3 chrX 113438853 113439216 -63534924 + L2 LINE L2 2836 3272 0 278 383 0 0 chrX 113439278 113439359 -63534781 + L2 LINE L2 3186 3266 -6 2024 118 14 4 chrX 113439378 113439705 -63534435 + AluSx SINE Alu 1 330 0 2217 114 3 0 chrX 113439707 113440005 -63534135 + AluSx SINE Alu 1 299 -13 186 298 0 18 chrX 113440458 113440515 -63533625 + MIR SINE MIR 206 261 -1 551 202 97 0 chrX 113440863 113440987 -63533153 - MIR SINE MIR -12 250 115 670 296 40 0 chrX 113441206 113441405 -63532735 + MIR SINE MIR 51 257 -5 294 268 0 14 chrX 113442356 113442427 -63531713 - L2 LINE L2 -15 3257 3188 2148 110 0 42 chrX 113442489 113442799 -63531341 + AluSx SINE Alu 1 297 -15 390 202 0 24 chrX 113442836 113442920 -63531220 + MIR3 SINE MIR 77 158 -50 2334 101 3 0 chrX 113443032 113443330 -63530810 - AluSx SINE Alu -13 299 1 3345 132 40 34 chrX 113443330 113443950 -63530190 - L1MA5 LINE L1 -237 6063 5440 277 260 84 26 chrX 113444230 113444384 -63529756 - L2 LINE L2 -193 3079 2917 478 206 84 0 chrX 113444396 113444503 -63529637 + L2 LINE L2 3193 3308 -5 410 118 0 26 chrX 113444503 113444579 -63529561 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 2073 145 0 0 chrX 113444582 113444878 -63529262 + AluSx SINE Alu 1 296 -16 1300 98 0 0 chrX 113444892 113445056 -63529084 + AluSg/x SINE Alu 125 288 -22 950 133 0 7 chrX 113445469 113445612 -63528528 - AluSg SINE Alu -9 301 160 4882 136 115 99 chrX 113445612 113447378 -63526762 - pTR5 LTR ERV1 -10 2428 743 1349 83 0 28 chrX 113447378 113447558 -63526582 - AluSg SINE Alu -135 175 1 2185 94 0 60 chrX 113447961 113448280 -63525860 + AluSx SINE Alu 1 300 -12 759 268 39 15 chrX 113448747 113448952 -63525188 + MIR SINE MIR 47 256 -6 2241 115 3 0 chrX 113449297 113449602 -63524538 + AluSx SINE Alu 1 306 -6 2034 116 25 4 chrX 113450004 113450306 -63523834 - AluSx SINE Alu 0 308 1 523 215 136 91 chrX 113450593 113450835 -63523305 + MIR SINE MIR 2 254 -8 1735 165 49 3 chrX 113450963 113451248 -63522892 + AluSx SINE Alu 1 298 -14 1018 166 12 0 chrX 113451326 113451489 -63522651 - FRAM SINE Alu -4 172 8 1991 134 10 3 chrX 113451962 113452253 -63521887 - AluSx SINE Alu -17 295 3 202 325 25 0 chrX 113452598 113452678 -63521462 + L2 LINE L2 3229 3310 -3 2306 90 0 13 chrX 113452770 113453070 -63521070 + AluSg SINE Alu 1 296 -14 198 0 0 0 chrX 113453481 113453503 -63520637 + (TC)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chrX 113453502 113453524 -63520616 + (CA)n Simple_repeat Simple_repeat 1 22 0 280 233 70 0 chrX 113453679 113453752 -63520388 + MIR SINE MIR 3 92 -116 722 120 0 72 chrX 113453752 113453877 -63520263 + LTR8 LTR ERV1 1 116 -575 580 103 0 0 chrX 113453876 113453954 -63520186 + LTR8 LTR ERV1 614 691 0 * 729 227 17 17 chrX 113453954 113454126 -63520014 + MIR SINE MIR 88 259 -3 2207 129 3 0 chrX 113454128 113454437 -63519703 - AluSx SINE Alu -2 310 1 292 326 36 56 chrX 113455513 113455709 -63518431 - L2 LINE L2 -4 3309 3118 535 250 70 12 chrX 113455730 113455902 -63518238 - L2 LINE L2 0 3313 3132 2190 127 0 0 chrX 113456002 113456294 -63517846 + AluSx SINE Alu 1 292 -20 1997 152 0 3 chrX 113456537 113456833 -63517307 + AluJo SINE Alu 1 295 -17 1053 188 48 8 chrX 113456842 113456982 -63517158 + L1 LINE L1 2949 3105 -3041 2308 76 10 17 chrX 113456982 113457312 -63516828 + AluY SINE Alu 1 311 0 1053 188 48 8 chrX 113457312 113457421 -63516719 + L1 LINE L1 3105 3208 -2938 375 82 0 16 chrX 113457421 113457482 -63516658 + L1PB2 LINE L1 6085 6144 -7 1830 74 0 51 chrX 113457523 113457779 -63516361 + AluSx SINE Alu 1 243 -69 474 198 21 0 chrX 113457881 113457977 -63516163 + L1MC4 LINE L1 7801 7898 -144 320 169 96 36 chrX 113457988 113458071 -63516069 + L1MC4 LINE L1 6615 6702 -1340 195 100 0 0 chrX 113458107 113458137 -63516003 + (GA)n Simple_repeat Simple_repeat 1 30 0 331 215 15 85 chrX 113458142 113458249 -63515891 + L1MC4 LINE L1 7922 8020 -22 1349 176 117 7 chrX 113458249 113458522 -63515618 - AluSg SINE Alu -7 303 1 331 215 15 85 chrX 113458522 113458544 -63515596 + L1MC4 LINE L1 8020 8042 0 2348 104 0 0 chrX 113458558 113458865 -63515275 + AluSc SINE Alu 1 307 -2 2100 137 3 6 chrX 113459019 113459332 -63514808 + AluJo SINE Alu 1 312 0 2443 84 3 0 chrX 113460178 113460477 -63513663 - AluSq SINE Alu -13 300 1 505 300 77 86 chrX 113460700 113461140 -63513000 - L2 LINE L2 -636 2678 2243 201 195 0 0 chrX 113461180 113461221 -63512919 + (CA)n Simple_repeat Simple_repeat 1 41 0 2798 198 73 6 chrX 113463019 113463192 -63510948 - MER63C DNA MER1_type -136 924 764 2543 69 3 3 chrX 113463192 113463498 -63510642 - AluSp SINE Alu -7 306 1 2798 198 73 6 chrX 113463498 113463858 -63510282 - MER63C DNA MER1_type -296 764 340 2263 115 0 3 chrX 113463858 113464163 -63509977 + AluSx SINE Alu 1 304 -8 2798 198 73 6 chrX 113464163 113464261 -63509879 - MER63C DNA MER1_type -720 340 250 2231 110 0 3 chrX 113464261 113464551 -63509589 + AluSx SINE Alu 1 289 -23 258 122 0 0 chrX 113464591 113464632 -63509508 - L2 LINE L2 0 3313 3273 1283 60 0 0 chrX 113464657 113464807 -63509333 + AluSp/q SINE Alu 157 306 -7 1110 159 42 53 chrX 113464807 113465071 -63509069 - MER63C DNA MER1_type -669 261 1 290 365 0 0 chrX 113465220 113465305 -63508835 + L2 LINE L2 3175 3259 -54 2282 85 3 31 chrX 113465318 113465637 -63508503 - AluSg SINE Alu 0 310 1 2362 88 0 13 chrX 113465652 113465957 -63508183 - AluSx SINE Alu -9 303 3 2282 117 0 0 chrX 113465961 113466260 -63507880 - AluSx SINE Alu -13 299 1 366 283 57 75 chrX 113466749 113466908 -63507232 + MIR3 SINE MIR 31 186 -22 2286 110 0 3 chrX 113466951 113467259 -63506881 - AluSx SINE Alu -5 307 1 779 206 0 0 chrX 113467367 113467493 -63506647 - FLAM_A SINE Alu -7 126 1 2308 118 6 0 chrX 113467547 113467885 -63506255 - L1PB3 LINE L1 0 6154 5815 1893 112 0 0 chrX 113467886 113468155 -63505985 - AluSq SINE Alu -2 311 43 728 95 0 0 chrX 113468155 113468271 -63505869 + AluSp/q SINE Alu 189 304 0 4596 138 14 32 chrX 113468271 113468961 -63505179 - L1P5 LINE L1 -685 5469 4802 2055 128 7 0 chrX 113468961 113469266 -63504874 - AluSx SINE Alu -3 309 3 4596 138 14 32 chrX 113469266 113469624 -63504516 - L1P5 LINE L1 -1352 4802 4439 925 163 19 0 chrX 113470260 113470420 -63503720 + FRAM SINE Alu 1 163 -13 221 147 0 0 chrX 113470517 113470551 -63503589 - MIR SINE MIR -12 250 217 675 240 33 7 chrX 113470623 113470773 -63503367 - MIR SINE MIR -77 185 32 345 133 0 0 chrX 113470785 113470860 -63503280 + (TA)n Simple_repeat Simple_repeat 2 76 0 1963 128 0 3 chrX 113470867 113471163 -63502977 - AluSx SINE Alu -16 296 2 259 254 158 0 chrX 113471662 113471776 -63502364 + MIR SINE MIR 21 152 -110 2354 72 0 0 chrX 113471815 113472108 -63502032 - AluSg SINE Alu -17 293 1 383 318 82 59 chrX 113472770 113473273 -63500867 - L2 LINE L2 0 3272 2760 1817 122 11 0 chrX 113473273 113473579 -63500561 + AluSq SINE Alu 4 312 0 383 318 82 59 chrX 113473579 113473634 -63500506 - L2 LINE L2 -512 2760 2708 719 174 0 0 chrX 113473636 113473751 -63500389 - FLAM_A SINE Alu -18 124 10 365 273 97 34 chrX 113473814 113473990 -63500150 - L2 LINE L2 -865 2449 2263 670 204 6 87 chrX 113473992 113474164 -63499976 + FRAM SINE Alu 4 161 -5 1863 110 4 4 chrX 113474195 113474467 -63499673 + AluSq SINE Alu 1 272 -41 249 33 0 0 chrX 113474473 113474503 -63499637 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 336 143 0 0 chrX 113474503 113474559 -63499581 + (GGGA)n Simple_repeat Simple_repeat 3 58 0 184 325 87 40 chrX 113474692 113474969 -63499171 - L2 LINE L2 -1504 1810 1521 1712 214 75 3 chrX 113474989 113475334 -63498806 - LTR16A LTR ERVL 0 450 81 379 299 64 20 chrX 113475440 113475644 -63498496 - L2 LINE L2 -1865 1449 1237 2146 102 3 3 chrX 113476441 113476746 -63497394 - AluSq SINE Alu -8 305 1 1798 114 0 0 chrX 113476981 113477226 -63496914 + AluSx SINE Alu 1 245 -67 1162 22 0 0 chrX 113477227 113477362 -63496778 + L1PA5 LINE L1 6020 6154 0 428 129 0 0 chrX 113477362 113477424 -63496716 + AluSx SINE Alu 235 296 -15 2754 93 15 70 chrX 113477638 113477786 -63496354 - MER65A LTR ERV1 0 445 290 2424 66 3 0 chrX 113477786 113478087 -63496053 + AluSp SINE Alu 1 302 -11 2754 93 15 70 chrX 113478087 113478218 -63495922 - MER65A LTR ERV1 -155 290 153 246 32 0 0 chrX 113478218 113478249 -63495891 + (TG)n Simple_repeat Simple_repeat 2 32 0 2284 79 7 0 chrX 113478249 113478553 -63495587 - AluSp SINE Alu -7 306 1 2754 93 15 70 chrX 113478553 113478742 -63495398 - MER65A LTR ERV1 -290 155 1 885 253 26 13 chrX 113478806 113479035 -63495105 - MIR SINE MIR -25 237 6 3769 77 60 14 chrX 113479620 113480182 -63493958 + L1MA3 LINE L1 5717 6304 -1 2109 103 0 0 chrX 113480450 113480774 -63493366 - AluSg SINE Alu 0 324 1 2202 95 0 3 chrX 113480776 113481081 -63493059 - AluSx SINE Alu -6 306 3 185 200 86 0 chrX 113481103 113481138 -63493002 - L2 LINE L2 -21 3251 3214 * 979 189 15 31 chrX 113481115 113481311 -63492829 - MIR SINE MIR -30 232 40 282 190 0 17 chrX 113481401 113481459 -63492681 - MIR SINE MIR -192 70 14 352 305 0 0 chrX 113481467 113481562 -63492578 - L2 LINE L2 -28 3285 3191 315 254 18 139 chrX 113481904 113482069 -63492071 + L2 LINE L2 3169 3313 0 2210 102 0 3 chrX 113482118 113482422 -63491718 - AluSx SINE Alu -9 303 1 955 239 154 50 chrX 113482423 113482820 -63491320 - L2 LINE L2 -45 3268 2831 818 158 0 0 chrX 113483248 113483387 -63490753 + FLAM_C SINE Alu 1 139 -4 222 95 0 48 chrX 113483387 113483427 -63490713 + (TA)n Simple_repeat Simple_repeat 1 39 -21 508 96 68 0 chrX 113483427 113483500 -63490640 - MADE1 DNA Mariner -2 78 1 222 95 0 48 chrX 113483500 113483522 -63490618 + (TA)n Simple_repeat Simple_repeat 39 60 0 844 188 22 6 chrX 113483534 113483715 -63490425 + AluJb SINE Alu 123 306 -6 2169 109 3 0 chrX 113483920 113484224 -63489916 + AluSx SINE Alu 1 305 -7 2126 252 76 84 chrX 113484232 113484345 -63489795 - L1M4 LINE L1 -864 5282 5170 2091 77 0 80 chrX 113484345 113484672 -63489468 - AluSg1 SINE Alu -8 301 1 2126 252 76 84 chrX 113484672 113484936 -63489204 - L1M4 LINE L1 -976 5170 4905 2283 103 3 0 chrX 113484936 113485247 -63488893 + AluSq SINE Alu 1 312 -1 2126 252 76 84 chrX 113485247 113485902 -63488238 - L1M4 LINE L1 -1241 4905 4260 2013 104 17 0 chrX 113485902 113486189 -63487951 - AluSg SINE Alu -18 292 1 2126 252 76 84 chrX 113486189 113486487 -63487653 - L1M4 LINE L1 -1886 4260 3961 850 128 0 0 chrX 113486624 113486741 -63487399 - FLAM_C SINE Alu -15 118 2 3060 106 51 4 chrX 113486757 113487249 -63486891 - L1MA6 LINE L1 -4 6296 5782 225 227 0 0 chrX 113487249 113487293 -63486847 + L1MC4 LINE L1 6659 6702 -1340 * 242 178 0 0 chrX 113487263 113487308 -63486832 - L1MC4 LINE L1 -1340 6702 6658 * 2827 137 40 54 chrX 113487300 113487645 -63486495 - L1M2 LINE L1 -663 5649 5300 2077 114 20 3 chrX 113487645 113487944 -63486196 + AluSx SINE Alu 1 304 -8 2294 88 0 0 chrX 113487953 113488250 -63485890 + AluSq SINE Alu 1 297 -16 2827 137 40 54 chrX 113488250 113488748 -63485392 - L1M2 LINE L1 -1020 5292 4794 795 154 15 0 chrX 113488749 113488879 -63485261 + AluSg/x SINE Alu 161 292 -18 515 335 34 39 chrX 113488906 113489112 -63485028 + L3 LINE CR1 1370 1574 -3 2101 123 0 0 chrX 113489136 113489437 -63484703 + AluSx SINE Alu 1 301 -11 1802 218 65 9 chrX 113489450 113489896 -63484244 + L2 LINE L2 1549 2019 -1295 613 95 0 12 chrX 113489922 113490006 -63484134 - AluS SINE Alu -228 84 2 1556 215 71 67 chrX 113490007 113490471 -63483669 + LTR33A LTR ERVL 20 488 -35 1982 96 4 0 chrX 113490471 113490742 -63483398 - AluSp SINE Alu -6 307 36 1556 215 71 67 chrX 113490742 113490771 -63483369 + LTR33A LTR ERVL 488 515 -8 2448 246 64 16 chrX 113490777 113491436 -63482704 + L2 LINE L2 1997 2692 -622 2081 111 3 13 chrX 113491436 113491742 -63482398 - AluSx SINE Alu -9 303 1 2448 246 64 16 chrX 113491742 113491765 -63482375 + L2 LINE L2 2692 2712 -602 706 133 9 0 chrX 113491767 113491872 -63482268 + AluJo SINE Alu 2 107 -205 363 23 0 0 chrX 113491877 113491921 -63482219 + (CAGGA)n Simple_repeat Simple_repeat 2 45 0 221 128 51 0 chrX 113491922 113491961 -63482179 + GA-rich Low_complexity Low_complexity 3 43 0 1182 111 21 21 chrX 113491969 113492158 -63481982 + AluJo SINE Alu 113 301 -11 904 260 171 40 chrX 113492161 113492696 -63481444 + L2 LINE L2 2707 3312 -1 220 400 94 0 chrX 113492818 113492978 -63481162 - L2 LINE L2 -1928 1386 1212 1022 192 25 46 chrX 113493109 113493390 -63480750 + L1MB2 LINE L1 4383 4657 -1489 2256 91 10 0 chrX 113493390 113493686 -63480454 + AluSx SINE Alu 1 299 -13 4756 127 27 52 chrX 113493697 113493977 -63480163 + L1MB2 LINE L1 5294 5580 -591 2193 114 0 0 chrX 113493977 113494276 -63479864 + AluSx SINE Alu 1 299 -13 4756 127 27 52 chrX 113494276 113494843 -63479297 + L1MB2 LINE L1 5580 6119 -52 2302 93 6 0 chrX 113494843 113495154 -63478986 + AluSq SINE Alu 1 313 0 4756 127 27 52 chrX 113495154 113495206 -63478934 + L1MB2 LINE L1 6119 6171 0 317 130 56 0 chrX 113495225 113495279 -63478861 + L1MC/D LINE L1 5391 5447 -886 2324 68 3 19 chrX 113495635 113495945 -63478195 + AluY SINE Alu 6 310 -1 564 266 98 33 chrX 113496206 113496450 -63477690 + MIR SINE MIR 3 262 0 320 310 125 35 chrX 113496537 113496824 -63477316 - L2 LINE L2 -2408 906 594 218 104 0 21 chrX 113496942 113496990 -63477150 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2007 108 3 35 chrX 113497370 113497685 -63476455 - AluSx SINE Alu -7 305 1 2337 82 3 0 chrX 113498199 113498504 -63475636 + AluSx SINE Alu 1 306 -6 628 176 343 20 chrX 113499091 113499336 -63474804 + MER5C DNA MER1_type 1 324 0 2264 93 0 0 chrX 113499713 113500023 -63474117 + AluSx SINE Alu 1 310 -2 689 128 0 0 chrX 113500540 113500665 -63473475 - AluSg/x SINE Alu 0 312 188 2338 74 3 3 chrX 113501005 113501315 -63472825 - AluSg SINE Alu 0 310 1 1193 165 10 0 chrX 113501741 113501947 -63472193 - AluJo SINE Alu -3 309 102 258 32 0 0 chrX 113501947 113501978 -63472162 + (A)n Simple_repeat Simple_repeat 1 31 0 540 153 20 20 chrX 113502007 113502105 -63472035 - AluJo SINE Alu -208 104 7 2173 89 10 0 chrX 113502144 113502436 -63471704 - AluSp SINE Alu -18 295 1 1762 152 17 7 chrX 113502442 113502731 -63471409 - AluJo SINE Alu -20 292 1 774 82 55 0 chrX 113502986 113503096 -63471044 + L1MA2 LINE L1 6182 6297 -7 21 36 0 0 chrX 113503099 113503127 -63471013 + AT_rich Low_complexity Low_complexity 1 28 0 234 193 0 0 chrX 113503145 113503202 -63470938 + A-rich Low_complexity Low_complexity 1 57 0 2259 92 0 0 chrX 113503608 113503902 -63470238 + AluSq SINE Alu 1 294 -19 2068 112 3 0 chrX 113504021 113504317 -63469823 + AluSx SINE Alu 1 297 -15 2375 57 13 0 chrX 113504564 113504863 -63469277 + AluSp SINE Alu 1 303 -10 208 250 0 0 chrX 113504906 113504950 -63469190 - L2 LINE L2 -5 3267 3224 949 202 16 83 chrX 113505034 113505108 -63469032 - MIR SINE MIR 0 262 185 2191 107 0 0 chrX 113505108 113505407 -63468733 + AluSx SINE Alu 1 299 -13 949 202 16 83 chrX 113505407 113505584 -63468556 - MIR SINE MIR -77 185 28 715 287 16 32 chrX 113505626 113505873 -63468267 + L2 LINE L2 2417 2659 -655 300 208 132 88 chrX 113506063 113506222 -63467918 - L1MC4a LINE L1 -1866 5942 5777 1074 245 115 9 chrX 113506240 113506562 -63467578 - L1MC4a LINE L1 -2160 5648 5293 6123 114 44 32 chrX 113506688 113506839 -63467301 + L1MA9 LINE L1 5276 5424 -888 2038 121 0 0 chrX 113506839 113507149 -63466991 + AluSx SINE Alu 1 310 0 6123 114 44 32 chrX 113507149 113507202 -63466938 + L1MA9 LINE L1 5424 5475 -837 2230 90 3 7 chrX 113507202 113507512 -63466628 + AluSc SINE Alu 1 309 0 6123 114 44 32 chrX 113507512 113508330 -63465810 + L1MA9 LINE L1 5475 6312 0 568 191 115 13 chrX 113508331 113508488 -63465652 + L1M4 LINE L1 3854 4026 -2120 1185 217 126 12 chrX 113508498 113508835 -63465305 - MSTD LTR MaLR -1 395 1 611 138 11 0 chrX 113508842 113508936 -63465204 + L1M4 LINE L1 4023 4117 -2029 * 4306 191 12 8 chrX 113508932 113509609 -63464531 + L1M4 LINE L1 4409 5093 -1053 1732 162 7 20 chrX 113509609 113509912 -63464228 - AluSx SINE Alu -13 299 1 4306 191 12 8 chrX 113509912 113510148 -63463992 + L1M4 LINE L1 5093 5326 -820 2184 100 7 3 chrX 113510148 113510449 -63463691 + AluSq SINE Alu 1 302 -11 1593 149 8 15 chrX 113510588 113510850 -63463290 - MER21A LTR ERV1 0 931 672 1953 113 27 7 chrX 113510850 113511142 -63462998 - AluSc SINE Alu -11 298 1 953 114 0 14 chrX 113511142 113511282 -63462858 - AluSq/x SINE Alu -169 143 6 2427 160 67 23 chrX 113511286 113511717 -63462423 - MER21A LTR ERV1 -246 685 236 470 165 12 0 chrX 113511726 113511811 -63462329 + L1MB7 LINE L1 6080 6165 -19 1978 115 39 0 chrX 113511830 113512116 -63462024 + AluSx SINE Alu 1 297 -15 235 273 0 146 chrX 113512123 113512233 -63461907 + MER5A DNA MER1_type 95 188 -1 284 332 40 7 chrX 113512250 113512399 -63461741 - L1ME LINE L1 -531 5639 5483 228 258 91 0 chrX 113512400 113512466 -63461674 - MIR SINE MIR -116 146 75 2354 78 0 0 chrX 113513112 113513405 -63460735 + AluSx SINE Alu 1 293 -19 2385 202 29 25 chrX 113513419 113513774 -63460366 + MLT1F LTR MaLR 1 360 -182 1995 131 0 7 chrX 113513774 113514071 -63460069 + AluJo SINE Alu 1 295 -17 2385 202 29 25 chrX 113514071 113514205 -63459935 + MLT1F LTR MaLR 360 492 -50 511 341 47 55 chrX 113514479 113514860 -63459280 - L2 LINE L2 -542 2772 2395 465 266 192 39 chrX 113514860 113515172 -63458968 - MLT1J LTR MaLR -10 501 142 2318 50 0 0 chrX 113515269 113515549 -63458591 + AluY SINE Alu 19 298 -13 440 366 76 0 chrX 113515595 113515912 -63458228 - L2 LINE L2 -940 2374 2034 1485 125 0 0 chrX 113515919 113516135 -63458005 + AluSg/x SINE Alu 97 312 0 1128 120 0 0 chrX 113516265 113516423 -63457717 + AluJb SINE Alu 1 158 -154 243 88 0 0 chrX 113516428 113516462 -63457678 + (A)n Simple_repeat Simple_repeat 1 34 0 1874 184 58 56 chrX 113516462 113516854 -63457286 + MLT1C LTR MaLR 24 428 -39 2066 119 3 7 chrX 113516854 113517156 -63456984 - AluSx SINE Alu -9 303 3 1874 184 58 56 chrX 113517156 113517197 -63456943 + MLT1C LTR MaLR 428 467 0 2346 60 0 10 chrX 113517202 113517500 -63456640 + AluY SINE Alu 1 295 -16 356 153 0 82 chrX 113517506 113517591 -63456549 + L2 LINE L2 3236 3313 0 2333 78 7 3 chrX 113517884 113518179 -63455961 + AluSq SINE Alu 1 296 -17 264 356 109 40 chrX 113518313 113518661 -63455479 + L2 LINE L2 2896 3267 -5 2170 110 0 20 chrX 113518716 113519017 -63455123 + AluSx SINE Alu 1 295 -17 424 244 77 13 chrX 113519508 113519664 -63454476 + MIR3 SINE MIR 40 205 -3 1031 179 0 22 chrX 113519794 113519973 -63454167 + FAM SINE Alu 1 175 0 1002 103 9 3 chrX 113519978 113520202 -63453938 + AluSx SINE Alu 2 296 -14 2093 104 9 28 chrX 113520332 113520650 -63453490 + AluSx SINE Alu 1 312 0 399 318 78 0 chrX 113520752 113520906 -63453234 - MIR SINE MIR -48 214 49 1389 256 110 29 chrX 113520959 113521064 -63453076 - L2 LINE L2 0 3313 3218 2163 89 45 17 chrX 113521064 113521201 -63452939 + AluSq SINE Alu 1 133 -180 2448 74 0 3 chrX 113521201 113521500 -63452640 + AluSp SINE Alu 3 300 -13 2163 89 45 17 chrX 113521500 113521654 -63452486 + AluSq SINE Alu 133 300 -13 1389 256 110 29 chrX 113521654 113522215 -63451925 - L2 LINE L2 -95 3218 2559 2526 75 3 0 chrX 113522216 113522523 -63451617 + AluSq SINE Alu 1 308 -5 1023 80 87 27 chrX 113522524 113522674 -63451466 + AluSg/x SINE Alu 135 293 -19 2484 266 56 30 chrX 113522676 113523164 -63450976 - L2 LINE L2 -744 2570 2047 2387 66 0 3 chrX 113523164 113523453 -63450687 + AluSg SINE Alu 1 288 -22 2484 266 56 30 chrX 113523453 113523845 -63450295 - L2 LINE L2 -1267 2047 1667 186 133 0 0 chrX 113524619 113524649 -63449491 + (TA)n Simple_repeat Simple_repeat 1 30 0 212 0 36 0 chrX 113524685 113524713 -63449427 + (TA)n Simple_repeat Simple_repeat 2 30 0 2829 123 43 17 chrX 113524806 113525269 -63448871 - L1MB7 LINE L1 -24 6160 5686 3723 165 137 102 chrX 113525269 113525602 -63448538 - Cheshire DNA MER1_type -635 1785 1465 639 85 0 0 chrX 113525602 113525684 -63448456 - AluSg SINE Alu -228 82 1 3723 165 137 102 chrX 113525684 113525976 -63448164 - Cheshire DNA MER1_type -955 1465 1185 2217 98 0 67 chrX 113525976 113526303 -63447837 - AluSx SINE Alu -7 305 1 3723 165 137 102 chrX 113526303 113526416 -63447724 - Cheshire DNA MER1_type -1235 1185 1077 1916 154 3 13 chrX 113526416 113526722 -63447418 - AluJo SINE Alu -9 303 1 3723 165 137 102 chrX 113526722 113526946 -63447194 - Cheshire DNA MER1_type -1343 1077 862 1974 114 0 80 chrX 113526946 113527156 -63446984 - AluSg SINE Alu -11 299 123 2717 42 0 0 chrX 113527156 113527466 -63446674 - AluY SINE Alu -1 310 1 1974 114 0 80 chrX 113527466 113527580 -63446560 - AluSg SINE Alu -187 123 1 3723 165 137 102 chrX 113527580 113527717 -63446423 - Cheshire DNA MER1_type -1558 862 561 472 210 92 17 chrX 113527716 113527835 -63446305 - Cheshire DNA MER1_type -2292 128 1 * 2138 166 73 49 chrX 113527890 113528383 -63445757 - MLT1D LTR MaLR 0 505 1 2332 88 0 7 chrX 113528432 113528728 -63445412 - AluSx SINE Alu -18 294 1 731 183 8 0 chrX 113529201 113529332 -63444808 - FLAM_C SINE Alu -1 132 1 2220 100 19 10 chrX 113529670 113529980 -63444160 - AluSp SINE Alu 0 313 1 1962 129 30 7 chrX 113530171 113530473 -63443667 - AluSx SINE Alu -3 309 1 2623 61 0 0 chrX 113530489 113530800 -63443340 - AluY SINE Alu 0 311 1 411 145 0 0 chrX 113531169 113531231 -63442909 + Tigger4(Zombi) DNA MER2_type 1 62 -2669 192 77 0 0 chrX 113531256 113531282 -63442858 + (A)n Simple_repeat Simple_repeat 1 26 0 2246 189 2 26 chrX 113531310 113531734 -63442406 + MLT1E3 LTR MaLR 1 414 -210 282 340 149 9 chrX 113532048 113532369 -63441771 + L2 LINE L2 2274 2639 -675 213 39 0 0 chrX 113532779 113532805 -63441335 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 192 200 0 0 chrX 113533179 113533229 -63440911 + A-rich Low_complexity Low_complexity 1 50 0 656 165 197 60 chrX 113535112 113535330 -63438810 - L1MD2 LINE L1 -2 6357 6110 216 0 0 0 chrX 113535454 113535478 -63438662 + (CA)n Simple_repeat Simple_repeat 2 25 0 2382 88 0 3 chrX 113535863 113536171 -63437969 - AluSg SINE Alu -2 308 2 2344 105 0 3 chrX 113536585 113536891 -63437249 - AluSq SINE Alu -8 305 1 22 0 0 0 chrX 113537361 113537383 -63436757 + AT_rich Low_complexity Low_complexity 1 22 0 344 265 12 0 chrX 113537552 113537635 -63436505 + Charlie8 DNA MER1_type 1 84 -2333 762 260 5 5 chrX 113538465 113538657 -63435483 - MIR SINE MIR -70 192 1 425 242 40 27 chrX 113540884 113541033 -63433107 + MER5B DNA MER1_type 2 152 -26 848 137 8 23 chrX 113541781 113541912 -63432228 + FLAM_C SINE Alu 2 130 -3 2191 97 7 23 chrX 113543600 113543899 -63430241 + AluSc SINE Alu 2 295 -14 2431 87 0 10 chrX 113544104 113544414 -63429726 - AluSg SINE Alu -3 307 1 1144 161 202 8 chrX 113546062 113546305 -63427835 + AluJo SINE Alu 3 292 -10 2241 109 3 0 chrX 113546587 113546889 -63427251 + AluSq SINE Alu 1 303 -10 1856 167 55 73 chrX 113551757 113552280 -63421860 + L1MC5 LINE L1 6697 7207 -778 2336 108 0 0 chrX 113552280 113552587 -63421553 + AluSx SINE Alu 4 310 -2 1856 167 55 73 chrX 113552587 113552633 -63421507 + L1MC5 LINE L1 7207 7252 -733 3207 159 43 39 chrX 113552636 113553002 -63421138 + L1MD1 LINE L1 4817 5180 -1179 2019 127 6 38 chrX 113553002 113553316 -63420824 + AluSx SINE Alu 1 304 -8 3207 159 43 39 chrX 113553316 113553610 -63420530 + L1MD1 LINE L1 5180 5471 -888 2531 87 0 0 chrX 113553610 113553920 -63420220 + AluSg SINE Alu 1 310 0 3207 159 43 39 chrX 113553920 113554046 -63420094 + L1MD1 LINE L1 5471 5595 -764 2419 80 3 0 chrX 113554046 113554347 -63419793 + AluSp SINE Alu 1 302 -11 3207 159 43 39 chrX 113554347 113554565 -63419575 + L1MD1 LINE L1 5595 5823 -536 1979 123 32 0 chrX 113554565 113554850 -63419290 - AluSg SINE Alu -16 294 1 397 127 28 0 chrX 113554850 113554921 -63419219 + L1MD1 LINE L1 6170 6242 0 723 240 90 54 chrX 113555076 113555597 -63418543 + L1MC5 LINE L1 7372 7911 -50 1794 137 7 63 chrX 113555638 113555937 -63418203 + AluJb SINE Alu 1 282 -30 2421 94 0 3 chrX 113555937 113556244 -63417896 - AluSx SINE Alu -6 306 1 2334 92 0 0 chrX 113556748 113557061 -63417079 + AluSq SINE Alu 1 313 0 2516 75 3 3 chrX 113557134 113557442 -63416698 + AluSp SINE Alu 1 308 -5 1624 155 74 15 chrX 113558126 113558397 -63415743 + AluJb SINE Alu 1 287 -25 2261 113 0 0 chrX 113558453 113558744 -63415396 - AluSg SINE Alu -19 291 1 2156 110 13 0 chrX 113559047 113559348 -63414792 + AluSx SINE Alu 1 305 -7 1682 124 113 4 chrX 113559615 113559881 -63414259 - AluSx SINE Alu -17 295 1 1944 135 33 10 chrX 113560055 113560359 -63413781 + AluSx SINE Alu 1 311 -1 2410 84 3 3 chrX 113560367 113560678 -63413462 + AluSp SINE Alu 1 311 -2 865 137 0 0 chrX 113560692 113560816 -63413324 + AluJb SINE Alu 1 124 -188 1002 179 11 6 chrX 113561489 113561668 -63412472 + MER5A DNA MER1_type 1 180 -9 2181 120 3 0 chrX 113561969 113562269 -63411871 + AluSx SINE Alu 1 301 -11 368 245 132 19 chrX 113562845 113563022 -63411118 + MIR3 SINE MIR 2 203 -59 529 239 15 8 chrX 113563055 113563189 -63410951 - L2 LINE L2 0 3313 3179 264 30 0 0 chrX 113563627 113563660 -63410480 + (CAAAAA)n Simple_repeat Simple_repeat 4 36 0 202 139 23 0 chrX 113563894 113563937 -63410203 + (CA)n Simple_repeat Simple_repeat 2 45 0 237 291 6 61 chrX 113564524 113564689 -63409451 + C-rich Low_complexity Low_complexity 3 158 0 240 172 0 0 chrX 113564845 113564903 -63409237 + (CGG)n Simple_repeat Simple_repeat 2 59 0 2525 69 0 3 chrX 113566531 113566837 -63407303 + AluSx SINE Alu 1 305 -7 468 301 21 11 chrX 113566862 113567048 -63407092 + MIR3 SINE MIR 20 207 -1 265 246 145 22 chrX 113567343 113567481 -63406659 + L2 LINE L2 3159 3313 0 993 195 46 134 chrX 113567585 113567995 -63406145 + MLT1A2 LTR MaLR 1 374 0 2586 80 0 0 chrX 113568485 113568796 -63405344 + AluSx SINE Alu 1 311 -1 2372 66 3 30 chrX 113568860 113569163 -63404977 - AluSg1 SINE Alu -14 295 1 330 215 153 60 chrX 113569395 113570035 -63404105 + L1MC4 LINE L1 6959 7813 -229 309 163 21 142 chrX 113570057 113570152 -63403988 + L1MC4 LINE L1 7902 7976 -66 2328 92 31 0 chrX 113570152 113570446 -63403694 - AluSp SINE Alu -10 303 1 309 163 21 142 chrX 113570446 113570491 -63403649 + L1MC4 LINE L1 7976 8025 -17 2156 100 14 3 chrX 113570503 113570792 -63403348 + AluSc SINE Alu 1 292 -17 1841 119 0 8 chrX 113570830 113571082 -63403058 - AluSx SINE Alu -62 250 1 1991 136 10 3 chrX 113571238 113571532 -63402608 + AluJb SINE Alu 1 296 -16 1144 92 7 0 chrX 113571840 113571992 -63402148 + AluSq SINE Alu 3 155 -158 2108 134 7 0 chrX 113572058 113572365 -63401775 + AluJo SINE Alu 2 310 -2 953 178 39 0 chrX 113572372 113572552 -63401588 + MER58B DNA MER1_type 146 332 -9 1924 127 10 36 chrX 113572552 113572859 -63401281 + AluJo SINE Alu 1 299 -13 998 172 56 37 chrX 113572882 113573097 -63401043 + MER20 DNA MER1_type 1 219 0 2372 110 0 0 chrX 113573122 113573423 -63400717 - AluSx SINE Alu -11 301 1 1974 93 8 0 chrX 113573579 113573837 -63400303 - AluSp SINE Alu -6 307 48 489 34 0 0 chrX 113576040 113576099 -63398041 + (TG)n Simple_repeat Simple_repeat 2 60 0 195 330 19 28 chrX 113576350 113576456 -63397684 - MER5A DNA MER1_type -5 184 80 398 328 16 0 chrX 113576631 113576753 -63397387 + MIR SINE MIR 28 151 -57 2583 64 0 3 chrX 113579256 113579568 -63394572 - AluY SINE Alu 0 311 1 2247 93 3 7 chrX 113579569 113579871 -63394269 - AluSq SINE Alu -12 301 1 184 87 0 43 chrX 113579908 113579954 -63394186 + (CCA)n Simple_repeat Simple_repeat 2 45 0 216 267 114 23 chrX 113580306 113580394 -63393746 - MIR SINE MIR -62 146 53 432 0 0 0 chrX 113580396 113580444 -63393696 + (TG)n Simple_repeat Simple_repeat 2 49 0 2367 98 0 0 chrX 113580445 113580741 -63393399 - AluSx SINE Alu -16 296 1 22 0 0 0 chrX 113580748 113580770 -63393370 + AT_rich Low_complexity Low_complexity 1 22 0 890 103 0 0 chrX 113580771 113580888 -63393252 - AluJb SINE Alu -195 117 1 250 241 35 23 chrX 113580888 113580975 -63393165 + MIR SINE MIR 120 207 -55 196 51 26 26 chrX 113580975 113581014 -63393126 + (CAAAAA)n Simple_repeat Simple_repeat 6 44 0 239 319 0 14 chrX 113581743 113581812 -63392328 - L2 LINE L2 -23 3290 3223 691 209 82 37 chrX 113582150 113582418 -63391722 + L1MC5 LINE L1 7562 7841 -120 2356 104 0 3 chrX 113582508 113582816 -63391324 + AluSx SINE Alu 4 310 -2 2420 60 4 0 chrX 113583095 113583424 -63390716 - AluSp SINE Alu 0 330 1 2179 108 0 10 chrX 113583666 113583962 -63390178 - AluSq SINE Alu -20 293 1 2001 141 3 29 chrX 113584494 113584800 -63389340 - AluJb SINE Alu -14 298 1 2253 115 7 0 chrX 113585641 113585936 -63388204 - AluSx SINE Alu -15 297 1 2233 97 40 3 chrX 113586738 113587038 -63387102 - AluSx SINE Alu -1 311 1 1859 122 53 43 chrX 113587066 113587223 -63386917 - AluSx SINE Alu -6 306 152 1833 99 0 0 chrX 113587223 113587456 -63386684 - AluSg/x SINE Alu -7 303 71 2589 57 0 3 chrX 113587456 113587755 -63386385 - AluY SINE Alu -11 300 1 1859 122 53 43 chrX 113587755 113587899 -63386241 - AluSx SINE Alu -159 153 1 218 283 17 0 chrX 113587932 113587992 -63386148 + CT-rich Low_complexity Low_complexity 5 65 0 595 202 30 99 chrX 113588768 113588800 -63385340 - MIR SINE MIR -1 261 228 2197 112 0 0 chrX 113588800 113589087 -63385053 + AluSx SINE Alu 14 300 -12 595 202 30 99 chrX 113589087 113589258 -63384882 - MIR SINE MIR -34 228 74 330 89 0 0 chrX 113589521 113589566 -63384574 + AluSg SINE Alu 1 45 -257 2054 97 15 0 chrX 113589590 113589858 -63384282 + AluSg SINE Alu 27 298 -12 2456 94 0 0 chrX 113590120 113590429 -63383711 - AluY SINE Alu -2 309 1 1623 147 79 18 chrX 113590555 113590699 -63383441 - AluJo SINE Alu -13 299 165 2341 113 0 6 chrX 113590699 113591010 -63383130 - AluSg SINE Alu -1 309 1 1623 147 79 18 chrX 113591010 113591144 -63382996 - AluJo SINE Alu -147 165 4 2589 37 0 3 chrX 113591151 113591445 -63382695 - AluY SINE Alu -18 293 1 2344 121 0 0 chrX 113591571 113591877 -63382263 - AluSx SINE Alu -6 306 1 2783 107 62 0 chrX 113591877 113592296 -63381844 - L1PA10 LINE L1 -259 5909 5465 733 246 39 11 chrX 113592650 113592829 -63381311 - MIR3 SINE MIR -24 184 1 233 318 16 78 chrX 113592865 113592994 -63381146 - L2 LINE L2 -9 3263 3143 2369 86 0 7 chrX 113593034 113593336 -63380804 + AluSx SINE Alu 1 300 -12 234 278 11 56 chrX 113593553 113593643 -63380497 - L2 LINE L2 -565 2749 2664 2445 107 0 0 chrX 113593676 113593986 -63380154 + AluSx SINE Alu 1 310 -2 1210 341 90 30 chrX 113594070 113594947 -63379193 - L2 LINE L2 -839 2475 1546 300 53 0 0 chrX 113595926 113595964 -63378176 + (GGCTG)n Simple_repeat Simple_repeat 5 42 0 438 312 95 82 chrX 113596456 113596469 -63377671 - L2 LINE L2 0 3272 3261 1410 56 0 0 chrX 113596469 113596649 -63377491 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 438 312 95 82 chrX 113596649 113596952 -63377188 - L2 LINE L2 -11 3261 2952 298 254 0 0 chrX 113596968 113597023 -63377117 - MIR SINE MIR -169 93 39 412 282 56 72 chrX 113597026 113597221 -63376919 - L2 LINE L2 -2678 636 445 254 307 107 0 chrX 113598437 113598587 -63375553 - L1ME3A LINE L1 -15 6155 5990 2210 105 20 26 chrX 113598756 113599061 -63375079 - AluSx SINE Alu -9 303 1 1192 38 0 0 chrX 113599137 113599268 -63374872 - AluSc SINE Alu -178 131 1 231 286 0 0 chrX 113599281 113599344 -63374796 - L1ME3A LINE L1 -604 5755 5693 274 287 51 45 chrX 113600292 113600449 -63373691 - L2 LINE L2 -10 3303 3146 247 209 0 0 chrX 113600475 113600518 -63373622 + L2 LINE L2 3264 3306 -7 416 315 91 0 chrX 113600889 113601032 -63373108 - L2 LINE L2 0 3272 3117 732 116 16 16 chrX 113601032 113601153 -63372987 + AluSg/x SINE Alu 186 306 -4 545 276 97 16 chrX 113601279 113601464 -63372676 - MIR SINE MIR -13 249 50 283 316 88 15 chrX 113602566 113602702 -63371438 - MIR SINE MIR -30 232 87 936 169 116 153 chrX 113603284 113603516 -63370624 - MLT1A1 LTR MaLR 0 365 126 2378 68 0 17 chrX 113603516 113603809 -63370331 + AluSg1 SINE Alu 1 288 -21 936 169 116 153 chrX 113603809 113603857 -63370283 - MLT1A1 LTR MaLR -239 126 78 2463 80 0 3 chrX 113603857 113604157 -63369983 - AluSq SINE Alu -14 299 1 936 169 116 153 chrX 113604157 113604186 -63369954 - MLT1A1 LTR MaLR -287 78 49 2445 76 0 13 chrX 113604186 113604354 -63369786 - AluSc SINE Alu -9 300 136 2333 90 3 0 chrX 113604354 113604644 -63369496 - AluSp SINE Alu -20 293 3 2445 76 0 13 chrX 113604644 113604779 -63369361 - AluSc SINE Alu -173 136 1 936 169 116 153 chrX 113604779 113604846 -63369294 - MLT1A1 LTR MaLR -316 49 1 1179 119 0 24 chrX 113606028 113606196 -63367944 + AluJb SINE Alu 133 296 -16 325 114 34 52 chrX 113606282 113606418 -63367722 + CT-rich Low_complexity Low_complexity 1 133 0 988 192 0 90 chrX 113606421 113606607 -63367533 - AluJb SINE Alu -3 309 149 2281 98 3 0 chrX 113606607 113606902 -63367238 - AluSp SINE Alu -17 296 1 988 192 0 90 chrX 113606902 113606960 -63367180 - AluJb SINE Alu -163 149 87 2131 89 92 3 chrX 113608061 113608343 -63365797 - AluSx SINE Alu -5 307 1 599 168 0 0 chrX 113608372 113608467 -63365673 + AluSg/x SINE Alu 216 310 0 21 0 0 0 chrX 113608517 113608538 -63365602 + AT_rich Low_complexity Low_complexity 1 21 0 2123 115 4 0 chrX 113608545 113608824 -63365316 + AluJo SINE Alu 7 286 -26 1051 228 51 8 chrX 113609190 113609427 -63364713 - MIR SINE MIR -1 261 15 2123 113 7 0 chrX 113610340 113610648 -63363492 + AluSp SINE Alu 1 310 0 2186 120 3 0 chrX 113610882 113611173 -63362967 - AluSx SINE Alu -20 292 1 556 242 7 28 chrX 113611245 113611388 -63362752 + MIR SINE MIR 36 174 -62 229 328 136 43 chrX 113612096 113612419 -63361721 + L2 LINE L2 2831 3183 -89 2030 126 3 3 chrX 113612736 113613044 -63361096 + AluSx SINE Alu 1 308 0 624 174 0 0 chrX 113613648 113613746 -63360394 - AluSg/x SINE Alu -19 291 194 245 313 0 0 chrX 113614211 113614275 -63359865 + L2 LINE L2 3176 3239 -33 268 342 102 34 chrX 113614341 113614607 -63359533 + L2 LINE L2 232 515 -2799 1974 202 72 0 chrX 113614711 113615157 -63358983 + Charlie4a DNA MER1_type 14 491 -17 807 271 49 35 chrX 113615174 113615458 -63358682 - L2 LINE L2 -153 3160 2873 518 82 0 0 chrX 113615481 113615554 -63358586 + L1M4 LINE L1 5709 5781 -393 2405 93 0 6 chrX 113615555 113615867 -63358273 + AluSg SINE Alu 1 310 0 2469 94 0 0 chrX 113615886 113616195 -63357945 + AluSx SINE Alu 1 309 -3 184 362 0 0 chrX 113616212 113616259 -63357881 + L2 LINE L2 3243 3289 -24 1911 168 3 3 chrX 113616458 113616756 -63357384 - AluJo SINE Alu -8 304 7 2487 60 0 7 chrX 113616793 113617093 -63357047 + AluY SINE Alu 1 298 -13 1031 287 68 24 chrX 113617109 113618279 -63355861 - L1MC4a LINE L1 -104 6017 4778 268 364 33 7 chrX 113618287 113618438 -63355702 + L2 LINE L2 1815 1969 -1345 771 224 42 95 chrX 113618500 113618763 -63355377 - MIR SINE MIR -1 261 13 1860 102 0 8 chrX 113618821 113619066 -63355074 - AluSx SINE Alu -11 301 59 4754 78 6 15 chrX 113819066 113819788 -63154352 + L1PA4 LINE L1 5596 6155 0 1579 170 32 16 chrX 113820274 113820586 -63153554 - L1PB4 LINE L1 -5 6151 5835 24 77 0 0 chrX 113820740 113820792 -63153348 + AT_rich Low_complexity Low_complexity 1 52 0 1997 149 86 47 chrX 113820906 113821109 -63153031 + MSTB LTR MaLR 1 195 -231 2289 105 3 0 chrX 113821109 113821415 -63152725 + AluSg SINE Alu 1 307 -3 1997 149 86 47 chrX 113821415 113821619 -63152521 + MSTB LTR MaLR 195 424 -2 6631 166 140 42 chrX 113821661 113822180 -63151960 + L1MC1 LINE L1 86 553 -5873 213 43 0 65 chrX 113822180 113822226 -63151914 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 6631 166 140 42 chrX 113822226 113822272 -63151868 + L1MC1 LINE L1 553 593 -5833 5587 120 14 25 chrX 113822272 113822971 -63151169 + L1PA13 LINE L1 4675 5380 -783 1638 90 0 14 chrX 113822971 113823183 -63150957 - AluSc SINE Alu -13 296 88 5587 120 14 25 chrX 113823183 113824009 -63150131 + L1PA13 LINE L1 5380 6163 0 6631 166 140 42 chrX 113824009 113825121 -63149019 + L1MC1 LINE L1 593 1928 -4498 * 9177 250 32 40 chrX 113825092 113826923 -63147217 + L1MC1 LINE L1 2391 4143 -2283 1899 164 31 86 chrX 113826923 113827379 -63146761 + Tigger2a DNA MER2_type 4 434 0 9177 250 32 40 chrX 113827379 113828869 -63145271 + L1MC1 LINE L1 4143 5644 -782 4667 153 21 4 chrX 113828874 113829679 -63144461 + L1MC1 LINE L1 5783 6608 -5 941 290 175 18 chrX 113829897 113830446 -63143694 + Charlie2b DNA MER1_type 2 636 -2146 12617 213 44 15 chrX 113830446 113836290 -63137850 + L1MA3 LINE L1 27 6751 -814 * 26156 134 12 18 chrX 113836288 113838041 -63136099 + L1PA8A LINE L1 1 1764 -4682 207 0 0 0 chrX 113838041 113838064 -63136076 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 26156 134 12 18 chrX 113838064 113842735 -63131405 + L1PA8A LINE L1 1764 6446 0 436 248 131 40 chrX 113843078 113843300 -63130840 + L1ME LINE L1 5507 5748 -373 1233 296 61 2 chrX 113843376 113843771 -63130369 + LTR16B LTR ERVL 1 418 -46 4547 190 26 12 chrX 113843772 113844747 -63129393 + L1MA3 LINE L1 6736 7723 -1 1676 210 81 75 chrX 113844770 113844941 -63129199 + Charlie2b DNA MER1_type 624 792 -1990 2278 103 0 6 chrX 113844941 113845253 -63128887 - AluSx SINE Alu -2 310 1 1676 210 81 75 chrX 113845253 113845720 -63128420 + Charlie2b DNA MER1_type 792 1266 -1516 1100 221 88 73 chrX 113845721 113846003 -63128137 + Charlie2b DNA MER1_type 2080 2356 -506 2308 102 0 0 chrX 113846003 113846316 -63127824 + AluSq SINE Alu 1 313 0 1100 221 88 73 chrX 113846316 113846647 -63127493 + Charlie2b DNA MER1_type 2356 2702 -80 924 246 122 74 chrX 113847201 113847676 -63126464 + MLT1D LTR MaLR 1 498 -7 1155 272 104 43 chrX 113848672 113849371 -63124769 - L2 LINE L2 -6 3307 2557 410 294 56 0 chrX 113849445 113849571 -63124569 - MER94 DNA DNA -1 133 1 38 22 0 0 chrX 113849720 113849765 -63124375 + AT_rich Low_complexity Low_complexity 1 45 0 1729 118 34 61 chrX 113849814 113850169 -63123971 - MER4A LTR ERV1 0 664 261 576 292 76 21 chrX 113850329 113850527 -63123613 - MIR SINE MIR -12 250 36 197 62 0 31 chrX 113850527 113850559 -63123581 + (CATATA)n Simple_repeat Simple_repeat 4 34 0 576 292 76 21 chrX 113850559 113850596 -63123544 - MIR SINE MIR -226 36 2 225 250 216 20 chrX 113850954 113851102 -63123038 - L1ME LINE L1 -328 5793 5617 1791 155 10 29 chrX 113851115 113851403 -63122737 + AluSx SINE Alu 1 284 -28 735 71 0 0 chrX 113851403 113851501 -63122639 + (GAGAA)n Simple_repeat Simple_repeat 5 102 0 1791 155 10 29 chrX 113851501 113851522 -63122618 + AluSx SINE Alu 284 304 -8 242 157 0 20 chrX 113851522 113851573 -63122567 + G-rich Low_complexity Low_complexity 2 51 0 261 289 39 19 chrX 113851607 113851711 -63122429 - L1ME LINE L1 -543 5578 5473 1223 265 71 60 chrX 113851736 113852534 -63121606 + L2 LINE L2 2508 3310 -3 396 311 119 25 chrX 113852530 113852765 -63121375 - L2 LINE L2 -1300 2014 1758 * 2170 218 26 21 chrX 113854235 113854763 -63119377 - L1ME1 LINE L1 -170 5996 5466 23 0 0 0 chrX 113855631 113855654 -63118486 + AT_rich Low_complexity Low_complexity 1 23 0 238 266 75 11 chrX 113855768 113855862 -63118278 + L1 LINE L1 4733 4832 -1314 8219 230 15 6 chrX 113856204 113857910 -63116230 + L1MA1 LINE L1 15 1735 -5830 6870 147 23 5 chrX 113857894 113860105 -63114035 + L1MA1 LINE L1 5470 7717 -4 * 21 36 0 0 chrX 113860105 113860133 -63114007 + AT_rich Low_complexity Low_complexity 1 28 0 216 158 0 0 chrX 113860140 113860178 -63113962 + (TA)n Simple_repeat Simple_repeat 2 39 0 303 269 0 4 chrX 113860386 113860478 -63113662 + AluJ/FRAM SINE Alu 229 301 -1 555 177 44 9 chrX 113860519 113860632 -63113508 + L1PB3 LINE L1 17 133 -7432 306 272 0 43 chrX 113860630 113860835 -63113305 + L1PB3 LINE L1 832 1193 -6373 * 11895 211 33 40 chrX 113860813 113864072 -63110068 + L1PB3 LINE L1 2106 5385 -2188 2304 101 0 0 chrX 113864072 113864369 -63109771 + AluSg SINE Alu 3 299 -11 11895 211 33 40 chrX 113864369 113866542 -63107598 + L1PB3 LINE L1 5385 7571 -2 7264 209 19 22 chrX 113866539 113866671 -63107469 + L1MB7 LINE L1 3554 3685 -2483 * 945 160 16 0 chrX 113866671 113866858 -63107282 + L1MA7 LINE L1 6101 6290 -1 7264 209 19 22 chrX 113866858 113868668 -63105472 + L1MB7 LINE L1 3685 5489 -679 2442 84 0 0 chrX 113868668 113868978 -63105162 + AluSg SINE Alu 1 310 0 4593 148 55 22 chrX 113868983 113869984 -63104156 + L1PB3 LINE L1 5157 6147 -7 328 49 0 0 chrX 113869197 113870008 -63104132 + (TA)n Simple_repeat Simple_repeat 1 852 0 2822 197 13 22 chrX 113870115 113870739 -63103401 + L1MB7 LINE L1 5552 6169 -15 918 240 51 16 chrX 113870767 113871021 -63103119 + L1MCc LINE L1 19 281 -6142 5819 124 2 0 chrX 113871156 113872016 -63102124 - L1PA15 LINE L1 0 6165 5304 488 293 59 39 chrX 113872086 113872464 -63101676 + L1ME LINE L1 5317 5702 -460 533 151 32 156 chrX 113873496 113873621 -63100519 - L1MB1 LINE L1 -254 6171 6075 1946 75 37 51 chrX 113873621 113873915 -63100225 - AluSp SINE Alu -23 290 1 533 151 32 156 chrX 113873915 113873975 -63100165 - L1MB1 LINE L1 -350 6075 6009 1338 138 46 0 chrX 113873986 113874225 -63099915 - L1MA5A LINE L1 -4 6293 6044 3352 216 9 16 chrX 113874244 113875494 -63098646 - L1MB1 LINE L1 -381 6023 4783 1821 198 89 9 chrX 113875512 113875972 -63098168 - L1MA9 LINE L1 -40 6272 5776 350 148 0 0 chrX 113875974 113876028 -63098112 - L1MA9 LINE L1 -638 5674 5621 * 8178 235 42 20 chrX 113876014 113877635 -63096505 - L1MB1 LINE L1 -1550 4832 3117 1506 179 44 7 chrX 113877635 113877932 -63096208 - AluJb SINE Alu -4 308 1 8178 235 42 20 chrX 113877932 113879116 -63095024 - L1MB1 LINE L1 -3265 3117 1960 512 306 24 6 chrX 113880106 113880276 -63093864 - MIR SINE MIR -9 253 81 207 293 40 13 chrX 113880316 113880391 -63093749 - MIR SINE MIR -181 81 5 298 281 21 10 chrX 113881673 113881769 -63092371 + MIR SINE MIR 56 152 -110 242 163 38 12 chrX 113881843 113881923 -63092217 + (TA)n Simple_repeat Simple_repeat 1 82 0 420 188 68 86 chrX 113881923 113882040 -63092100 + L1MDa LINE L1 97 211 -6329 4483 190 21 23 chrX 113882045 113883284 -63090856 - L1PB4 LINE L1 -3 6153 4918 1248 289 69 43 chrX 113883276 113883818 -63090322 + L1MDa LINE L1 208 734 -5806 * 2385 163 84 36 chrX 113883818 113884378 -63089762 + LTR4 LTR ERV1 1 587 -1 1248 289 69 43 chrX 113884378 113884531 -63089609 + L1MDa LINE L1 734 1316 -5224 * 1907 208 73 21 chrX 113884515 113885218 -63088922 + L1MDa LINE L1 2075 2815 -3725 568 130 11 11 chrX 113885250 113885342 -63088798 + MER4A LTR ERV1 3 94 -570 1908 134 3 19 chrX 113885346 113885697 -63088443 + MER4A LTR ERV1 261 664 0 1093 248 22 3 chrX 113885711 113886022 -63088118 + L1MDa LINE L1 2858 3174 -3366 545 192 152 17 chrX 113886032 113886092 -63088048 + MER5A DNA MER1_type 6 57 -132 2864 48 0 0 chrX 113886092 113886447 -63087693 + L1PA5 LINE L1 5793 6147 -7 545 192 152 17 chrX 113886447 113886540 -63087600 + MER5A DNA MER1_type 57 183 -6 1816 183 29 49 chrX 113887525 113888091 -63086049 - MLT2A2 LTR ERVL 0 554 1 475 298 35 23 chrX 113889382 113889553 -63084587 + MIR SINE MIR 67 239 -23 4052 134 98 34 chrX 113889605 113889842 -63084298 - MER4D LTR ERV1 -40 832 611 909 132 7 13 chrX 113889842 113889994 -63084146 + L1MA2 LINE L1 6154 6304 0 4052 134 98 34 chrX 113889994 113890010 -63084130 - MER4D LTR ERV1 -261 611 597 2204 124 0 0 chrX 113890010 113890316 -63083824 + AluSx SINE Alu 1 306 -6 4052 134 98 34 chrX 113890316 113890820 -63083320 - MER4D LTR ERV1 -275 597 26 2045 101 0 60 chrX 113890820 113891138 -63083002 - THE1B LTR MaLR 0 364 66 330 320 76 41 chrX 113891169 113891341 -63082799 - L1M3c LINE L1 -5707 434 257 754 394 27 11 chrX 113891375 113891814 -63082326 - L1M3c LINE L1 -5695 446 1 251 296 25 12 chrX 113891825 113891906 -63082234 - MIR SINE MIR -109 153 72 264 250 40 26 chrX 113891908 113891984 -63082156 + L2 LINE L2 3231 3307 -6 193 221 162 29 chrX 113892200 113892268 -63081872 - MIR SINE MIR -75 133 57 1531 173 17 21 chrX 113892659 113892948 -63081192 - MER7A DNA MER2_type 0 346 61 382 299 78 0 chrX 113893905 113894059 -63080081 + MLT2C1 LTR ERVL 3 168 -229 4396 175 53 10 chrX 113894066 113894901 -63079239 + L1PA16 LINE L1 5286 6156 -10 2729 172 9 67 chrX 113895076 113895628 -63078512 - MLT2B1 LTR ERVL 0 520 1 384 22 0 0 chrX 113895717 113895762 -63078378 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chrX 113897820 113897843 -63076297 + (A)n Simple_repeat Simple_repeat 1 23 0 21 71 0 0 chrX 113898179 113898221 -63075919 + AT_rich Low_complexity Low_complexity 1 42 0 257 279 101 0 chrX 113898243 113898322 -63075818 + L2 LINE L2 3227 3313 0 28 0 0 0 chrX 113898421 113898449 -63075691 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chrX 113898510 113898538 -63075602 + AT_rich Low_complexity Low_complexity 1 28 0 183 246 58 43 chrX 113899287 113899356 -63074784 + L2 LINE L2 2877 2946 -368 563 182 33 126 chrX 113899754 113899853 -63074287 + L1MDb LINE L1 1224 1331 -5075 2114 128 0 3 chrX 113899853 113900172 -63073968 + AluSg SINE Alu 1 310 0 563 182 33 126 chrX 113900172 113900324 -63073816 + L1MDb LINE L1 1331 1466 -4940 * 16011 162 20 2 chrX 113900321 113903001 -63071139 - L1M1 LINE L1 -4820 2745 17 191 341 49 12 chrX 113903588 113903670 -63070470 + L2 LINE L2 2702 2786 -528 214 218 92 69 chrX 113904027 113904114 -63070026 + L2 LINE L2 3168 3256 -16 22 0 0 0 chrX 113904116 113904138 -63070002 + AT_rich Low_complexity Low_complexity 1 22 0 40 0 0 0 chrX 113904160 113904200 -63069940 + AT_rich Low_complexity Low_complexity 1 40 0 307 301 55 136 chrX 113904267 113904539 -63069601 - L2 LINE L2 -7 3265 3016 769 278 107 11 chrX 113904560 113904924 -63069216 + L1ME3A LINE L1 5631 6029 -141 189 0 0 0 chrX 113904984 113905005 -63069135 + (TC)n Simple_repeat Simple_repeat 2 22 0 928 76 0 0 chrX 113905876 113905995 -63068145 - L1PA10 LINE L1 -17 6151 6033 203 224 15 15 chrX 113907328 113907395 -63066745 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 7353 8 0 8 chrX 113910951 113911795 -63062345 - L1PA2 LINE L1 0 6155 5319 1684 31 4 0 chrX 113911793 113912025 -63062115 + L1P LINE L1 5132 5367 -807 * 530 306 48 48 chrX 113912617 113912990 -63061150 + L1MCc LINE L1 35 407 -6016 746 293 74 51 chrX 113913477 113914426 -63059714 + L1MCc LINE L1 1013 2218 -4725 6336 189 23 12 chrX 113914591 113916725 -63057415 - L1PA14 LINE L1 0 6161 4006 1857 246 33 4 chrX 113916729 113917184 -63056956 - L1 LINE L1 -3288 2858 2391 236 241 126 11 chrX 113917288 113917375 -63056765 - MLT1H-int LTR MaLR -1269 102 6 429 318 106 39 chrX 113917379 113917883 -63056257 - MLT1H LTR MaLR 0 549 5 1589 284 99 14 chrX 113917888 113919495 -63054645 + L1M4c LINE L1 1370 3212 -3170 1195 193 5 0 chrX 113919495 113919697 -63054443 + AluJb SINE Alu 88 290 -22 257 229 0 0 chrX 113919700 113919761 -63054379 + L1M4c LINE L1 3209 3269 -3113 901 209 12 81 chrX 113919778 113920037 -63054103 - L1MA9 LINE L1 -373 5939 5699 * 1274 183 95 7 chrX 113920032 113920174 -63053966 + L1MA9 LINE L1 6001 6129 -183 195 42 0 0 chrX 113920174 113920198 -63053942 + (CA)n Simple_repeat Simple_repeat 1 24 0 1274 183 95 7 chrX 113920198 113920340 -63053800 + L1MA9 LINE L1 6129 6310 -2 457 272 59 33 chrX 113920337 113920570 -63053570 + L1M4c LINE L1 3264 3489 -2893 * 1968 128 43 72 chrX 113920570 113920944 -63053196 + THE1B LTR MaLR 1 363 -1 10583 112 20 5 chrX 113920945 113922502 -63051638 + THE1B-int LTR MaLR 1 1580 0 2208 106 48 28 chrX 113922502 113922859 -63051281 + THE1B LTR MaLR 1 364 0 457 272 59 33 chrX 113922859 113922927 -63051213 + L1M4c LINE L1 3488 3576 -2806 10434 236 60 29 chrX 113922940 113924227 -63049913 + L1PA11 LINE L1 10 1256 -5205 227 31 31 0 chrX 113924227 113924259 -63049881 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 10434 236 60 29 chrX 113924259 113926496 -63047644 + L1PA11 LINE L1 1256 3423 -3038 7226 43 1 4 chrX 113926496 113928208 -63045932 + L1PA6 LINE L1 4445 6152 -2 * 11852 154 23 3 chrX 113928200 113931217 -63042923 + L1PA11 LINE L1 3492 6488 -1 10434 236 60 29 chrX 113928208 113931917 -63042223 + L1PA11 LINE L1 3423 4337 -2124 21 36 0 0 chrX 113931993 113932021 -63042119 + AT_rich Low_complexity Low_complexity 1 28 0 240 86 0 0 chrX 113932082 113932117 -63042023 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 194 16 0 chrX 113932212 113932274 -63041866 + MER91B DNA MER1_type 1 63 -127 189 0 0 0 chrX 113932722 113932743 -63041397 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 826 332 72 27 chrX 113933242 113933890 -63040250 + L1M3d LINE L1 572 1073 -5580 265 315 56 11 chrX 113933899 113933988 -63040152 + L1MA4 LINE L1 274 366 -6287 233 294 15 29 chrX 113934006 113934074 -63040066 + L1MA4 LINE L1 278 344 -6309 250 346 13 0 chrX 113934111 113934189 -63039951 + L1MA4 LINE L1 278 356 -6297 262 333 0 0 chrX 113934208 113934277 -63039863 + L1MA4 LINE L1 269 337 -6316 274 240 52 35 chrX 113934523 113934621 -63039519 + L1MA4 LINE L1 269 1019 -5634 252 350 12 12 chrX 113934633 113934713 -63039427 + L1MB1 LINE L1 278 357 -6296 5097 252 68 13 chrX 113934764 113937883 -63036257 + L1MB1 LINE L1 945 3847 -2885 5451 186 8 7 chrX 113937884 113939858 -63034282 + L1MA4 LINE L1 4897 6872 -14 6172 169 34 23 chrX 113939886 113941238 -63032902 + L1MB1 LINE L1 3839 5205 -1527 * 6751 20 0 0 chrX 113941233 113942014 -63032126 - L1PA2 LINE L1 -3 6152 5372 * 19946 29 1 0 chrX 113942007 113944419 -63029721 + L1PA2 LINE L1 2967 5379 -767 3229 192 32 21 chrX 113944430 113945174 -63028966 + L1MB1 LINE L1 5228 5979 -753 4233 255 39 18 chrX 113945177 113947161 -63026979 + L1MB5 LINE L1 1945 3965 -2417 * 9009 19 0 0 chrX 113947158 113948202 -63025938 - L1PA3 LINE L1 -1327 4819 3776 7724 24 0 0 chrX 113948202 113949543 -63024597 + L1PA3 LINE L1 4815 6155 0 1737 228 38 12 chrX 113949544 113950040 -63024100 + L1MB5 LINE L1 3953 4461 -1921 2558 166 10 27 chrX 113950097 113950580 -63023560 + L1MB1 LINE L1 6244 6718 -36 1415 218 59 17 chrX 113950563 113950972 -63023168 + L1MB5 LINE L1 4492 4917 -1465 * 1294 164 0 0 chrX 113951066 113951285 -63022855 + L1MA5 LINE L1 5596 5814 -486 2739 154 18 10 chrX 113951315 113951816 -63022324 + L1MA5 LINE L1 5795 6299 -1 3822 200 29 32 chrX 113951823 113952259 -63021881 + L1MB5 LINE L1 5046 5482 -928 237 65 0 0 chrX 113952259 113952290 -63021850 + (TA)n Simple_repeat Simple_repeat 1 31 0 3822 200 29 32 chrX 113952290 113953210 -63020930 + L1MB5 LINE L1 5482 6402 -8 4129 143 56 44 chrX 113953210 113954065 -63020075 + L1MB7 LINE L1 5318 6182 -2 251 348 62 53 chrX 113954162 113954406 -63019734 - MIR SINE MIR -15 247 2 1228 292 40 28 chrX 113954562 113954987 -63019153 + LTR16A LTR ERVL 18 447 -3 535 216 96 0 chrX 113955686 113955811 -63018329 + L2 LINE L2 3177 3313 0 267 250 16 0 chrX 113955841 113955905 -63018235 + GA-rich Low_complexity Low_complexity 4 68 0 367 328 17 8 chrX 113955941 113956060 -63018080 - MER5A DNA MER1_type -7 182 63 3419 276 113 7 chrX 113957240 113958387 -63015753 + L2 LINE L2 1118 2386 -928 1018 246 123 74 chrX 113958402 113958934 -63015206 - MLT1E LTR MaLR -10 582 1 1714 321 45 21 chrX 113958934 113959829 -63014311 + L2 LINE L2 2405 3312 -1 355 346 30 30 chrX 113959884 113960086 -63014054 - MIR SINE MIR 0 262 61 493 298 7 13 chrX 113960164 113960315 -63013825 - MIR SINE MIR 0 262 113 21 89 0 0 chrX 113960406 113960462 -63013678 + AT_rich Low_complexity Low_complexity 1 56 0 1903 149 34 5 chrX 113960462 113960936 -63013204 - L1MA5A LINE L1 -743 5403 4939 * 4742 156 29 5 chrX 113960935 113961760 -63012380 + L1MA5A LINE L1 5429 6273 -24 798 279 109 0 chrX 113964327 113964556 -63009584 - MIR SINE MIR -1 261 8 424 319 42 81 chrX 113965227 113965634 -63008506 + L1M3d LINE L1 253 643 -5488 1201 257 69 58 chrX 113965692 113966185 -63007955 + L1M3d LINE L1 915 1418 -4723 3288 113 16 23 chrX 113966185 113966752 -63007388 + L1MA3 LINE L1 5743 6305 0 1201 257 69 58 chrX 113966752 113966912 -63007228 + L1M3d LINE L1 1418 1575 -4566 393 250 133 0 chrX 113967016 113967144 -63006996 + MIR SINE MIR 97 241 -21 232 352 0 0 chrX 113967147 113967218 -63006922 + Charlie8 DNA MER1_type 181 251 -2166 527 343 53 51 chrX 113967704 113968115 -63006025 + LTR33 LTR ERVL 10 421 -100 2239 83 0 0 chrX 113968294 113968572 -63005568 - AluSc SINE Alu -15 294 17 365 318 71 74 chrX 113969963 113970164 -63003976 + L2 LINE L2 2465 2666 -648 1778 155 60 0 chrX 113970164 113970448 -63003692 - AluSx SINE Alu -7 305 5 365 318 71 74 chrX 113970448 113970611 -63003529 + L2 LINE L2 2666 2828 -486 2506 79 22 5 chrX 113970742 113971110 -63003030 - L1MA2 LINE L1 0 6304 5931 336 303 15 149 chrX 113971110 113971305 -63002835 + L2 LINE L2 3007 3175 -97 2706 35 3 0 chrX 113971379 113971689 -63002451 + AluY SINE Alu 1 311 0 1986 233 67 29 chrX 113971706 113972285 -63001855 - MER67C LTR ERV1 -61 649 49 223 352 22 11 chrX 113972354 113972445 -63001695 + L2 LINE L2 392 483 -2831 231 232 20 91 chrX 113972470 113972569 -63001571 + L2 LINE L2 2194 2285 -1029 1552 266 52 33 chrX 113972656 113973138 -63001002 + L2 LINE L2 2304 2794 -520 320 321 0 0 chrX 113973119 113973203 -63000937 + L2 LINE L2 2928 3011 -302 * 650 163 35 0 chrX 113973218 113973359 -63000781 - L1MB7 LINE L1 0 6184 6039 2327 156 18 8 chrX 113973367 113973757 -63000383 - MER57A LTR ERV1 -9 394 1 1297 158 49 21 chrX 113973757 113974042 -63000098 - L1MB7 LINE L1 -146 6038 5746 2490 188 23 0 chrX 113974762 113975245 -62998895 - L1MB7 LINE L1 -24 6160 5667 351 298 138 39 chrX 113975260 113975441 -62998699 + L2 LINE L2 3021 3219 -94 946 101 16 0 chrX 113975444 113975573 -62998567 - AluSg/x SINE Alu -11 299 169 355 296 11 0 chrX 113975573 113975661 -62998479 + L2 LINE L2 3215 3303 -10 906 230 34 0 chrX 113975982 113976186 -62997954 + MIR SINE MIR 26 236 -26 1043 233 98 0 chrX 113976403 113976639 -62997501 + MIR SINE MIR 2 260 -2 299 195 92 0 chrX 113978192 113978279 -62995861 - L1MB3 LINE L1 -2 6181 6087 3770 158 28 56 chrX 113978286 113979471 -62994669 - L1MA4 LINE L1 -283 6017 4867 2262 86 16 0 chrX 113979471 113979785 -62994355 - L1PA13 LINE L1 -4 6159 5841 3770 158 28 56 chrX 113979785 113979870 -62994270 - L1MA4 LINE L1 -1433 4867 4781 4362 36 2 0 chrX 113979917 113980438 -62993702 + L1PA4 LINE L1 5629 6150 -5 259 125 75 0 chrX 113980535 113980575 -62993565 - L1MC4 LINE L1 -679 7363 7321 425 270 0 0 chrX 113981211 113981300 -62992840 + MIR3 SINE MIR 88 176 -32 507 287 85 76 chrX 113981471 113981788 -62992352 - MER102b DNA MER1_type -20 321 2 324 70 0 0 chrX 113982910 113982953 -62991187 + (CA)n Simple_repeat Simple_repeat 2 44 0 230 200 36 0 chrX 113982960 113983015 -62991125 - L1MC4 LINE L1 -1328 6714 6658 266 329 0 0 chrX 113983240 113983316 -62990824 + MIR SINE MIR 68 143 -65 2135 128 3 0 chrX 113983727 113984033 -62990107 - AluSx SINE Alu -5 307 1 22 0 0 0 chrX 113984037 113984059 -62990081 + AT_rich Low_complexity Low_complexity 1 22 0 1215 232 60 0 chrX 113984110 113984412 -62989728 + L1MB7 LINE L1 4622 4941 -1205 1079 260 97 53 chrX 113984412 113984982 -62989158 + MER76 LTR ERV 1 656 -32 1444 191 52 61 chrX 113984997 113985350 -62988790 + L1MB7 LINE L1 4947 5275 -899 1809 169 3 20 chrX 113985350 113985651 -62988489 + AluJo SINE Alu 3 298 -14 1444 191 52 61 chrX 113985651 113985860 -62988280 + L1MB7 LINE L1 5275 5484 -690 316 206 0 0 chrX 113985957 113986020 -62988120 + L1MC4 LINE L1 6641 6703 -1339 2117 186 37 7 chrX 113986301 113986731 -62987409 - MER65A LTR ERV1 -2 443 1 2751 223 15 19 chrX 113986731 113987303 -62986837 + L1MB7 LINE L1 5492 6064 -120 2582 44 0 0 chrX 113987303 113987600 -62986540 + AluY SINE Alu 1 297 -14 2751 223 15 19 chrX 113987600 113987684 -62986456 + L1MB7 LINE L1 6064 6147 -37 1932 170 35 33 chrX 113988017 113988411 -62985729 + L1MB5 LINE L1 5513 5907 -267 1584 134 37 0 chrX 113988411 113988680 -62985460 + L1MA4 LINE L1 6000 6278 -22 1175 195 50 4 chrX 113988681 113988942 -62985198 + L1MB5 LINE L1 5890 6162 -12 364 174 81 0 chrX 113990523 113990609 -62983531 + L1MD1 LINE L1 5847 5939 -303 903 90 0 0 chrX 113990679 113990812 -62983328 - L1PB1 LINE L1 0 6151 6019 830 216 0 50 chrX 113990850 113991049 -62983091 + L1MD1 LINE L1 5995 6183 -59 1171 202 101 92 chrX 113991063 113991519 -62982621 - MER41B LTR ERV1 -34 601 142 921 316 136 55 chrX 113991528 113992383 -62981757 + L2 LINE L2 1846 2867 -405 2163 115 0 0 chrX 113992383 113992678 -62981462 - AluSx SINE Alu -14 298 4 921 316 136 55 chrX 113992678 113993115 -62981025 + L2 LINE L2 2867 3267 -5 25 75 0 0 chrX 113993665 113993718 -62980422 + AT_rich Low_complexity Low_complexity 1 53 0 256 369 94 31 chrX 113994835 113994995 -62979145 + MIR SINE MIR 45 214 -48 1151 278 63 12 chrX 113995641 113995976 -62978164 + LTR40a LTR ERVL 1 352 -167 353 334 44 63 chrX 113996238 113996558 -62977582 + L2 LINE L2 2712 3024 -248 291 136 0 0 chrX 113996597 113996656 -62977484 + (CA)n Simple_repeat Simple_repeat 1 59 0 183 162 0 0 chrX 113999736 113999773 -62974367 + (TG)n Simple_repeat Simple_repeat 1 37 0 318 297 31 109 chrX 114000086 114000315 -62973825 - L2 LINE L2 -55 3217 3007 184 338 28 28 chrX 114000407 114000478 -62973662 - L2 LINE L2 -480 2834 2764 180 375 106 0 chrX 114001264 114001368 -62972772 - MIR SINE MIR -114 148 34 1679 349 107 25 chrX 114001574 114002176 -62971964 + L3 LINE CR1 330 881 -696 1094 205 158 25 chrX 114002176 114002498 -62971642 + MLT1A1 LTR MaLR 1 365 0 1679 349 107 25 chrX 114002498 114002958 -62971182 + L3 LINE CR1 881 1480 -97 500 291 106 22 chrX 114002959 114003138 -62971002 - MIR3 SINE MIR 0 208 15 5026 199 43 41 chrX 114003156 114003267 -62970873 - ERVL LTR ERVL -2792 2972 2863 2293 104 0 22 chrX 114003267 114003583 -62970557 - AluSc SINE Alu 0 309 1 2084 109 36 7 chrX 114003589 114003892 -62970248 - AluSx SINE Alu 0 312 1 5026 199 43 41 chrX 114003892 114004855 -62969285 - ERVL LTR ERVL -2905 2859 1888 6693 188 74 45 chrX 114005323 114006096 -62968044 - L1MC3 LINE L1 -15 7770 7021 2041 153 24 19 chrX 114006096 114006469 -62967671 + THE1C LTR MaLR 1 375 0 9552 127 37 21 chrX 114006469 114007832 -62966308 + THE1C-int LTR MaLR 1 1392 -188 2216 92 3 0 chrX 114007832 114008115 -62966025 - AluSg SINE Alu -26 284 1 9552 127 37 21 chrX 114008115 114008307 -62965833 + THE1C-int LTR MaLR 1392 1580 0 2119 144 21 21 chrX 114008307 114008682 -62965458 + THE1C LTR MaLR 1 375 0 6693 188 74 45 chrX 114008682 114009656 -62964484 - L1MC3 LINE L1 -763 7022 5970 7770 171 35 12 chrX 114009664 114012335 -62961805 - L1MA3 LINE L1 0 7724 4994 4056 187 22 6 chrX 114012336 114013046 -62961094 - L1MA3 LINE L1 -5771 1794 1073 4553 230 14 3 chrX 114013069 114013996 -62960144 - L1MA3 LINE L1 -6613 952 16 2511 211 23 21 chrX 114013990 114014550 -62959590 - L1MC3 LINE L1 -359 5985 5425 * 2431 54 0 3 chrX 114014568 114014866 -62959274 - AluY SINE Alu -14 297 1 1458 184 36 0 chrX 114015066 114015343 -62958797 + L1PB4 LINE L1 5865 6151 -5 320 348 87 16 chrX 114015463 114015647 -62958493 + L1ME LINE L1 257 453 -5617 2295 273 71 32 chrX 114015734 114016468 -62957672 + L1ME LINE L1 449 1152 -4928 2120 126 0 3 chrX 114016468 114016753 -62957387 + AluSx SINE Alu 1 284 -28 186 71 0 0 chrX 114016753 114016781 -62957359 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2295 273 71 32 chrX 114016781 114017963 -62956177 + L1ME LINE L1 1151 2407 -3673 881 235 38 19 chrX 114017960 114018279 -62955861 + L1M4 LINE L1 4900 5224 -922 * 510 90 0 0 chrX 114018291 114018358 -62955782 - MLT2A1 LTR ERVL -88 356 290 235 83 0 0 chrX 114018358 114018394 -62955746 - MLT2A2 LTR ERVL -417 36 1 4233 118 7 7 chrX 114018396 114019007 -62955133 + THE1C-int LTR MaLR 963 1573 -7 2135 130 35 16 chrX 114019014 114019382 -62954758 + THE1C LTR MaLR 1 375 0 3382 103 10 20 chrX 114019426 114019932 -62954208 + L1PA11 LINE L1 5673 6173 -1 653 241 64 13 chrX 114019937 114020173 -62953967 + L1M1 LINE L1 2908 3155 -4410 5192 234 38 12 chrX 114020202 114021645 -62952495 + L1ME1 LINE L1 2033 3532 -2850 8659 111 9 21 chrX 114021645 114022948 -62951192 + HSMAR1 DNA Mariner 1 1287 0 5192 234 38 12 chrX 114022948 114023252 -62950888 + L1ME1 LINE L1 3532 3827 -2555 4838 179 14 12 chrX 114023234 114024185 -62949955 + L1MA8 LINE L1 5337 6289 -2 * 2324 235 60 25 chrX 114024206 114024853 -62949287 + L1ME1 LINE L1 5664 6333 -69 270 349 18 23 chrX 114025593 114025723 -62948417 - MIR3 SINE MIR -54 154 37 1593 196 106 17 chrX 114026178 114026536 -62947604 - MSTD LTR MaLR -6 390 1 260 329 40 0 chrX 114026671 114026747 -62947393 + L2 LINE L2 3186 3264 -8 23 0 0 0 chrX 114027646 114027669 -62946471 + AT_rich Low_complexity Low_complexity 1 23 0 505 317 12 12 chrX 114028401 114028565 -62945575 + MIR SINE MIR 15 178 -84 35 0 0 0 chrX 114028693 114028728 -62945412 + AT_rich Low_complexity Low_complexity 1 35 0 854 267 24 28 chrX 114028775 114029026 -62945114 + MIR SINE MIR 13 262 0 605 250 85 40 chrX 114029447 114029647 -62944493 + MER58C DNA MER1_type 1 209 -6 209 365 159 0 chrX 114029775 114029901 -62944239 + L2 LINE L2 3127 3272 0 263 158 0 18 chrX 114030114 114030171 -62943969 + CT-rich Low_complexity Low_complexity 4 59 0 503 175 117 0 chrX 114030780 114030883 -62943257 - MSTB LTR MaLR -311 115 1 924 251 32 66 chrX 114030994 114031384 -62942756 + MSTB2 LTR MaLR 1 435 -22 1629 166 63 41 chrX 114031384 114031751 -62942389 + THE1C LTR MaLR 1 375 0 924 251 32 66 chrX 114031751 114031772 -62942368 + MSTB2 LTR MaLR 435 455 -2 1506 182 3 46 chrX 114032182 114032484 -62941656 - AluJb SINE Alu -17 295 7 253 270 100 75 chrX 114032710 114032824 -62941316 + L1MC/D LINE L1 5707 5830 -1978 2019 138 10 3 chrX 114032824 114033121 -62941019 + AluSx SINE Alu 2 300 -12 253 270 100 75 chrX 114033121 114033206 -62940934 + L1MC/D LINE L1 5830 5911 -1897 212 318 48 16 chrX 114033405 114033468 -62940672 - L2 LINE L2 -279 2993 2929 511 271 100 39 chrX 114033976 114034205 -62939935 + MIR SINE MIR 20 262 0 302 239 17 77 chrX 114034309 114034426 -62939714 - MIR SINE MIR -49 213 104 4665 258 44 32 chrX 114034549 114037635 -62936505 + L1PA15 LINE L1 1 3403 -3394 7196 214 15 15 chrX 114037642 114040106 -62934034 + L1PA15 LINE L1 4348 6816 0 1967 175 33 51 chrX 114040763 114041321 -62932819 + MLT2A2 LTR ERVL 1 554 0 279 329 14 56 chrX 114041535 114041678 -62932462 + L2 LINE L2 2942 3078 -194 331 241 13 0 chrX 114041754 114041833 -62932307 - MER116 DNA Mariner 0 80 1 272 342 154 0 chrX 114041865 114041982 -62932158 + L2 LINE L2 3138 3272 0 424 299 85 20 chrX 114044160 114044262 -62929878 - L1ME4a LINE L1 -26 6095 6001 1073 228 85 43 chrX 114044262 114044591 -62929549 - MER2 DNA MER2_type 0 344 2 424 299 85 20 chrX 114044591 114044782 -62929358 - L1ME4a LINE L1 -120 6001 5783 339 316 137 0 chrX 114045096 114045286 -62928854 - MIR SINE MIR -10 252 37 1312 114 5 16 chrX 114045489 114045682 -62928458 + LTR1B LTR ERV1 1 191 -635 * 2603 124 67 5 chrX 114045674 114046110 -62928030 + LTR1B LTR ERV1 364 826 0 682 286 74 9 chrX 114046658 114046875 -62927265 - MIR SINE MIR -8 254 24 302 206 22 54 chrX 114047816 114047877 -62926263 - MIR3 SINE MIR -49 159 100 2065 178 8 0 chrX 114047877 114048237 -62925903 - MLT1A1 LTR MaLR -2 363 1 302 206 22 54 chrX 114048237 114048267 -62925873 - MIR3 SINE MIR -108 100 71 237 325 73 97 chrX 114048328 114048575 -62925565 - L2 LINE L2 -445 2869 2635 387 0 0 0 chrX 114048575 114048618 -62925522 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 325 73 97 chrX 114048618 114048792 -62925348 - L2 LINE L2 -679 2635 2458 879 279 20 12 chrX 114048794 114049041 -62925099 + MIR SINE MIR 5 253 -9 300 316 86 33 chrX 114049294 114049666 -62924474 + MLT1K LTR MaLR 151 588 0 2149 109 23 7 chrX 114050417 114050719 -62923421 + AluSx SINE Alu 1 307 -5 570 67 0 0 chrX 114050719 114050794 -62923346 + (GGAA)n Simple_repeat Simple_repeat 3 77 0 1146 309 164 30 chrX 114051079 114052014 -62922126 + L2 LINE L2 1314 2373 -941 475 314 100 23 chrX 114052016 114052277 -62921863 + L2 LINE L2 2256 2536 -778 26 50 0 0 chrX 114052297 114052337 -62921803 + AT_rich Low_complexity Low_complexity 1 40 0 1473 106 64 158 chrX 114052525 114052855 -62921285 + AluSg SINE Alu 1 299 -11 734 329 29 26 chrX 114052951 114053295 -62920845 + L2 LINE L2 2505 2849 -465 343 206 37 75 chrX 114053436 114053543 -62920597 - MIR SINE MIR -50 212 110 1229 169 93 90 chrX 114053678 114054021 -62920119 + MER2 DNA MER2_type 1 344 0 266 322 93 25 chrX 114054266 114054384 -62919756 + L2 LINE L2 3143 3268 -4 1495 178 225 3 chrX 114054488 114054830 -62919310 - MER47B DNA MER2_type 0 418 1 606 252 32 7 chrX 114055007 114055162 -62918978 + MLT1J LTR MaLR 71 229 -282 379 287 59 10 chrX 114057770 114057871 -62916269 + MER91C DNA MER1_type 33 138 -2 24 0 0 0 chrX 114058516 114058540 -62915600 + AT_rich Low_complexity Low_complexity 1 24 0 812 244 54 45 chrX 114059142 114059384 -62914756 + MIR SINE MIR 19 262 0 384 277 62 0 chrX 114060657 114060769 -62913371 - MER91C DNA MER1_type -10 130 12 397 231 19 19 chrX 114060995 114061099 -62913041 - MER5A DNA MER1_type -48 141 38 196 289 83 33 chrX 114061628 114061749 -62912391 - L3 LINE CR1 -867 710 584 566 314 61 20 chrX 114062208 114062453 -62911687 - MIR SINE MIR -6 256 2 301 246 179 23 chrX 114062511 114062881 -62911259 - L1 LINE L1 -1320 4826 4389 1275 224 31 45 chrX 114063150 114063548 -62910592 - MLT1B LTR MaLR 0 467 1 511 330 124 43 chrX 114063616 114064283 -62909857 - L1 LINE L1 -1908 4238 3514 705 98 189 0 chrX 114064978 114065100 -62909040 - L1MA3 LINE L1 -2 7722 7578 2573 108 103 0 chrX 114065105 114065511 -62908629 - L1MA3 LINE L1 -262 7462 7015 * 5569 169 17 10 chrX 114065507 114066318 -62907822 - L1MA3 LINE L1 -770 6795 5972 2443 168 26 2 chrX 114066318 114066734 -62907406 + MSTB LTR MaLR 1 426 0 5569 169 17 10 chrX 114066734 114067045 -62907095 - L1MA3 LINE L1 -1593 5972 5665 269 143 0 0 chrX 114067045 114067087 -62907053 + MSTA LTR MaLR 387 428 0 18359 155 40 11 chrX 114067087 114070200 -62903940 - L1MA3 LINE L1 -4351 3214 11 2071 207 95 71 chrX 114070262 114070871 -62903269 - MLT1E2 LTR MaLR -2 624 1 953 246 8 29 chrX 114071066 114071306 -62902834 - MIR SINE MIR -19 243 9 288 321 50 13 chrX 114071569 114071728 -62902412 + MIR SINE MIR 88 252 -10 3758 58 2 0 chrX 114071960 114072439 -62901701 - L1PA2 LINE L1 0 6155 5676 565 296 152 39 chrX 114073598 114073855 -62900285 + MLT1K LTR MaLR 122 407 -181 362 337 93 57 chrX 114074541 114074734 -62899406 - MIR3 SINE MIR -7 201 2 194 347 160 27 chrX 114075678 114075903 -62898237 - MIR SINE MIR -7 255 1 417 20 0 0 chrX 114076632 114076682 -62897458 + (CA)n Simple_repeat Simple_repeat 1 50 0 215 317 41 32 chrX 114076763 114076886 -62897254 + L2 LINE L2 3189 3312 -1 445 343 52 13 chrX 114077177 114077410 -62896730 + LTR16C LTR ERVL 96 337 -154 649 324 5 5 chrX 114077565 114077769 -62896371 + MIR SINE MIR 54 257 -5 1720 176 27 118 chrX 114078977 114079528 -62894612 + MLT1D LTR MaLR 3 503 -2 196 233 0 0 chrX 114080221 114080264 -62893876 + L2 LINE L2 3193 3235 -78 272 276 0 8 chrX 114080987 114081121 -62893019 + (TA)n Simple_repeat Simple_repeat 1 133 0 768 312 81 5 chrX 114081367 114081723 -62892417 - LTR16A LTR ERVL -2 448 1 552 268 101 24 chrX 114081982 114082191 -62891949 + MIR SINE MIR 13 237 -25 920 304 11 4 chrX 114082198 114082458 -62891682 + MIR SINE MIR 1 262 0 14427 166 32 12 chrX 114082690 114088584 -62885556 - L1MA1 LINE L1 -19 7702 1703 1162 258 50 24 chrX 114088585 114088961 -62885179 - L1MA1 LINE L1 -7153 412 27 8707 198 55 23 chrX 114088964 114092682 -62881458 - L1PBb LINE L1 -1656 4547 646 204 97 0 0 chrX 114092682 114092713 -62881427 + (TTAA)n Simple_repeat Simple_repeat 4 34 0 8707 198 55 23 chrX 114092713 114093357 -62880783 - L1PBb LINE L1 -5557 646 24 238 337 68 18 chrX 114093509 114093672 -62880468 - MIR SINE MIR -2 260 90 4119 286 22 41 chrX 114093866 114095417 -62878723 - L1PBa LINE L1 -5226 1624 103 251 225 14 28 chrX 114095418 114095489 -62878651 - L1PBa LINE L1 -6779 70 1 223 261 46 0 chrX 114096192 114096257 -62877883 + L2 LINE L2 3244 3311 -2 24 0 0 0 chrX 114096361 114096385 -62877755 + AT_rich Low_complexity Low_complexity 1 24 0 1517 223 17 27 chrX 114096564 114096972 -62877168 + L1M4 LINE L1 4552 4955 -1191 1922 188 13 8 chrX 114096984 114097377 -62876763 + L1 LINE L1 3253 3647 -2499 599 269 189 25 chrX 114097812 114098098 -62876042 + MLT1J2 LTR MaLR 1 333 -117 863 307 68 57 chrX 114098563 114099391 -62874749 + ERVL LTR ERVL 1021 1857 -3907 443 290 23 0 chrX 114099580 114099709 -62874431 + ERVL LTR ERVL 2087 2219 -3266 1306 332 64 44 chrX 114099770 114100791 -62873349 + ERVL LTR ERVL 2349 3389 -2375 1190 312 25 29 chrX 114100994 114101519 -62872621 + ERVL LTR ERVL 3660 4182 -1582 251 253 20 20 chrX 114101733 114101832 -62872308 - L1P LINE L1 -1142 5004 4906 71 0 0 0 chrX 114102150 114102221 -62871919 + AT_rich Low_complexity Low_complexity 1 71 0 315 252 39 58 chrX 114102238 114102393 -62871747 - L1M4 LINE L1 -2222 3924 3773 44101 38 1 2 chrX 114102544 114108707 -62865433 + L1PA3 LINE L1 1 6152 -3 381 117 0 0 chrX 114108758 114108818 -62865322 + (CA)n Simple_repeat Simple_repeat 2 61 0 665 276 78 76 chrX 114109038 114109575 -62864565 + MLT1F LTR MaLR 1 538 -4 447 221 122 70 chrX 114109725 114109938 -62864202 - MLT1C LTR MaLR -243 224 1 24 32 0 0 chrX 114109973 114110004 -62864136 + AT_rich Low_complexity Low_complexity 1 31 0 1961 136 94 0 chrX 114110459 114110767 -62863373 - MER1B DNA MER1_type 0 337 1 423 0 0 0 chrX 114111480 114111527 -62862613 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chrX 114111793 114111816 -62862324 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chrX 114112601 114112636 -62861504 + AT_rich Low_complexity Low_complexity 1 35 0 1178 172 120 24 chrX 114112654 114112945 -62861195 - L1MB8 LINE L1 0 6178 5860 21 0 0 0 chrX 114112945 114112966 -62861174 + AT_rich Low_complexity Low_complexity 1 21 0 4881 155 30 39 chrX 114112966 114113334 -62860806 - L1PB4 LINE L1 -13 6143 5773 495 0 0 0 chrX 114113334 114113389 -62860751 + (TA)n Simple_repeat Simple_repeat 1 55 0 4881 155 30 39 chrX 114113389 114114394 -62859746 - L1PB4 LINE L1 -383 5773 4781 354 333 46 9 chrX 114115093 114115201 -62858939 + L2 LINE L2 3160 3271 -1 217 265 102 75 chrX 114115343 114115490 -62858650 - MIR SINE MIR -6 256 106 21 0 0 0 chrX 114115606 114115627 -62858513 + AT_rich Low_complexity Low_complexity 1 21 0 614 274 55 50 chrX 114115627 114115846 -62858294 - MIR SINE MIR -32 230 11 6704 131 17 3 chrX 114115906 114117791 -62856349 - L1PA10 LINE L1 -11 6157 4244 656 186 77 13 chrX 114117797 114117953 -62856187 - L1MB8 LINE L1 -1 6177 6012 25 0 0 0 chrX 114118883 114118908 -62855232 + AT_rich Low_complexity Low_complexity 1 25 0 389 335 60 0 chrX 114119761 114119928 -62854212 - MIR SINE MIR -1 261 85 32 57 0 0 chrX 114119930 114119983 -62854157 + AT_rich Low_complexity Low_complexity 1 53 0 296 250 16 0 chrX 114120440 114120504 -62853636 - MER96 DNA MER1_type? 0 175 111 46 45 0 0 chrX 114121855 114121922 -62852218 + AT_rich Low_complexity Low_complexity 1 67 0 344 280 40 10 chrX 114122194 114122294 -62851846 - MIR3 SINE MIR -6 202 100 3603 185 40 23 chrX 114122689 114123511 -62850629 - L1MC2 LINE L1 -48 6296 5461 2235 163 13 2 chrX 114123511 114123909 -62850231 - MER6 DNA MER2_type -1 864 463 590 211 94 63 chrX 114126333 114126556 -62847584 + MLT1D LTR MaLR 1 230 -275 1710 57 0 0 chrX 114126606 114126815 -62847325 - L1PA5 LINE L1 -1941 4205 3997 9543 37 9 0 chrX 114126815 114128432 -62845708 + L1PA5 LINE L1 4217 5841 -313 262 265 34 77 chrX 114128595 114128712 -62845428 + MIR SINE MIR 43 154 -108 497 253 188 0 chrX 114129693 114129863 -62844277 + L2 LINE L2 2586 2787 -527 459 94 129 0 chrX 114130047 114130132 -62844008 - MER4A LTR ERV1 -568 96 1 238 262 24 24 chrX 114130132 114130216 -62843924 - L1MB8 LINE L1 -2000 5808 5725 797 285 60 65 chrX 114130279 114130648 -62843492 - MLT1I LTR MaLR -2 407 41 1215 163 47 36 chrX 114131059 114131335 -62842805 + LTR1 LTR ERV1 1 279 -506 2038 93 34 0 chrX 114131596 114131864 -62842276 + AluSx SINE Alu 35 311 -1 307 325 35 61 chrX 114132584 114132812 -62841328 + MLT1I LTR MaLR 80 301 -108 259 248 38 48 chrX 114132819 114132924 -62841216 + MLT1I LTR MaLR 405 508 -41 14284 85 14 6 chrX 114133025 114135588 -62838552 - HERVL LTR ERVL -763 4891 2281 4597 60 2 2 chrX 114135743 114136326 -62837814 + L1PA7 LINE L1 5561 6143 -11 281 265 26 0 chrX 114136326 114136443 -62837697 + (TA)n Simple_repeat Simple_repeat 2 121 0 260 229 115 68 chrX 114136507 114136699 -62837441 + L1ME4a LINE L1 5902 6102 -19 290 234 94 41 chrX 114136724 114136895 -62837245 + L1ME4a LINE L1 5924 6103 -18 187 181 96 84 chrX 114137116 114137199 -62836941 - MIR3 SINE MIR -43 165 82 2105 110 3 0 chrX 114137360 114137664 -62836476 + AluSx SINE Alu 1 305 0 5327 125 15 4 chrX 114137858 114138778 -62835362 - L1P LINE L1 -970 5176 4247 * 9661 122 20 22 chrX 114138777 114140298 -62833842 - L1P3 LINE L1 -4944 1517 1 609 280 50 35 chrX 114140298 114140580 -62833560 - L1ME LINE L1 -355 5766 5481 947 225 7 18 chrX 114140895 114141180 -62832960 - Charlie2 DNA MER1_type -89 2773 2492 489 117 47 0 chrX 114141220 114141348 -62832792 + (TA)n Simple_repeat Simple_repeat 1 134 0 1372 221 71 17 chrX 114141356 114141832 -62832308 - Charlie2 DNA MER1_type -446 2416 1915 453 261 43 17 chrX 114142487 114142602 -62831538 - L2 LINE L2 0 3272 3155 192 353 75 54 chrX 114142667 114143038 -62831102 - L2 LINE L2 -568 2746 2368 318 232 95 60 chrX 114143186 114143354 -62830786 - MER104 DNA Tc2 -3 177 4 333 327 6 26 chrX 114143357 114143513 -62830627 + L2 LINE L2 3149 3301 -12 190 390 28 79 chrX 114143554 114143731 -62830409 - L2 LINE L2 -75 3197 3030 1452 238 14 14 chrX 114143799 114144164 -62829976 - MLT1A1 LTR MaLR 0 365 1 6950 211 57 63 chrX 114144170 114145908 -62828232 - MLT1A1-int LTR MaLR -7 1728 1 1435 230 48 26 chrX 114145908 114146252 -62827888 - MLT1A1 LTR MaLR 0 365 14 1891 152 20 99 chrX 114146252 114146706 -62827434 + LTR8 LTR ERV1 1 418 -273 1373 78 11 6 chrX 114146736 114146916 -62827224 + AluY SINE Alu 1 181 -130 240 35 0 0 chrX 114146930 114146959 -62827181 + (A)n Simple_repeat Simple_repeat 1 29 0 2735 113 102 2 chrX 114147063 114147515 -62826625 - THE1C-int LTR MaLR -1081 499 3 1824 123 4 11 chrX 114147517 114147786 -62826354 - THE1C LTR MaLR 0 375 109 203 125 25 0 chrX 114147952 114147992 -62826148 + (TA)n Simple_repeat Simple_repeat 2 42 0 258 267 50 0 chrX 114148011 114148112 -62826028 - L1ME LINE L1 -223 5898 5793 2008 166 3 16 chrX 114149513 114149880 -62824260 - MER47A DNA MER2_type -4 362 1 221 255 151 47 chrX 114149880 114149986 -62824154 - L2 LINE L2 -18 3295 3179 372 274 44 22 chrX 114150043 114150178 -62823962 + Charlie2 DNA MER1_type 19 156 -2626 267 272 70 44 chrX 114150349 114150463 -62823677 - L2 LINE L2 -15 3257 3141 302 289 59 30 chrX 114151711 114151846 -62822294 + L1MC5 LINE L1 7719 7857 -104 293 153 68 0 chrX 114151846 114151905 -62822235 - L1M LINE L1 -795 5385 5323 697 198 12 12 chrX 114151908 114152075 -62822065 - L1MB4 LINE L1 -3 6177 6011 1893 229 52 44 chrX 114152083 114152856 -62821284 + L1MEc LINE L1 1538 2316 -4080 432 202 31 114 chrX 114152996 114153189 -62820951 - L1ME1 LINE L1 -44 6122 5946 1924 167 125 20 chrX 114153194 114153347 -62820793 - Tigger2 DNA MER2_type 0 2718 2582 1707 168 145 18 chrX 114153347 114153727 -62820413 + MSTA LTR MaLR 1 428 0 1924 167 125 20 chrX 114153727 114154027 -62820113 - Tigger2 DNA MER2_type -136 2582 1 350 261 18 0 chrX 114154030 114154141 -62819999 - L1ME1 LINE L1 -223 5943 5831 656 210 94 0 chrX 114154141 114154279 -62819861 + Tigger1 DNA MER2_type 1 151 -2267 * 924 244 5 5 chrX 114154275 114154492 -62819648 + Tigger1 DNA MER2_type 2202 2418 0 1691 242 20 25 chrX 114154497 114155219 -62818921 - L1MC3 LINE L1 -449 5717 5152 294 140 56 7 chrX 114155415 114155558 -62818582 + (TA)n Simple_repeat Simple_repeat 1 150 0 57 47 0 0 chrX 114155558 114155643 -62818497 + AT_rich Low_complexity Low_complexity 1 85 0 386 169 16 54 chrX 114155646 114155830 -62818310 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 * 442 187 53 0 chrX 114155790 114155961 -62818179 + (TA)n Simple_repeat Simple_repeat 1 180 0 21 0 0 0 chrX 114156224 114156245 -62817895 + GC_rich Low_complexity Low_complexity 1 21 0 3395 99 141 140 chrX 114156413 114157598 -62816542 + pTR5 LTR ERV1 1082 2431 -7 503 131 2 14 chrX 114157598 114157688 -62816452 - MSTA LTR MaLR -336 90 1 913 293 84 61 chrX 114158213 114159789 -62814351 + L1MEd LINE L1 42 1672 -4638 10749 189 31 85 chrX 114161108 114165049 -62809091 - L1MA4A LINE L1 -149 6856 3293 1670 122 62 88 chrX 114165049 114165433 -62808707 + THE1C LTR MaLR 1 374 -1 10749 189 31 85 chrX 114165433 114166851 -62807289 - L1MA4A LINE L1 -3712 3293 1800 216 262 0 0 chrX 114168490 114168532 -62805608 + polypyrimidine Low_complexity Low_complexity 4 45 0 229 334 84 0 chrX 114168844 114168958 -62805182 - MIR SINE MIR -68 140 42 1339 169 87 54 chrX 114170362 114170694 -62803446 - MER2 DNA MER2_type 0 344 2 2300 98 0 0 chrX 114171295 114171591 -62802549 + AluY SINE Alu 1 296 -15 2161 125 7 0 chrX 114172668 114172957 -62801183 - AluSx SINE Alu -21 291 1 1376 166 20 140 chrX 114173182 114173525 -62800615 - AluJb SINE Alu 0 302 1 1113 201 35 8 chrX 114173699 114173953 -62800187 + MIR SINE MIR 2 262 0 702 204 44 89 chrX 114173970 114174195 -62799945 + L2 LINE L2 3099 3313 0 214 349 0 0 chrX 114174186 114174252 -62799888 + L2 LINE L2 1834 1899 -1415 * 632 367 34 23 chrX 114174266 114174620 -62799520 + L2 LINE L2 2463 2820 -494 2293 158 45 28 chrX 114174665 114175172 -62798968 + L1MB7 LINE L1 5612 6127 -57 1771 165 0 45 chrX 114175190 114175499 -62798641 - AluSx SINE Alu -17 295 1 333 368 8 0 chrX 114175560 114175685 -62798455 + L2 LINE L2 2813 2938 -376 7884 78 1 3 chrX 114175900 114178019 -62796121 - HERVL-A1 LTR ERVL -3438 2216 1 3182 88 11 7 chrX 114178019 114178461 -62795679 - MLT2A1 LTR ERVL 0 444 1 1789 190 16 3 chrX 114178461 114178825 -62795315 + L1MB1 LINE L1 5786 6154 -14 2325 68 10 3 chrX 114178861 114179156 -62794984 + AluY SINE Alu 1 297 -14 4478 293 69 20 chrX 114179240 114181032 -62793108 - L2 LINE L2 0 3313 1440 306 341 37 15 chrX 114181149 114181284 -62792856 + MIR3 SINE MIR 18 155 -53 488 267 53 13 chrX 114182167 114182317 -62791823 + MIR SINE MIR 2 157 -105 191 191 258 22 chrX 114182325 114182414 -62791726 - MIR SINE MIR 0 262 153 * 255 188 129 99 chrX 114182388 114182489 -62791651 + MIR SINE MIR 155 258 -4 321 365 31 81 chrX 114182503 114182960 -62791180 - L2 LINE L2 -8 3264 2831 619 210 7 0 chrX 114182979 114183117 -62791023 - Charlie1 DNA MER1_type 0 2761 2623 438 323 37 26 chrX 114183582 114183771 -62790369 - L2 LINE L2 -8 3305 3115 2013 144 123 8 chrX 114183892 114184275 -62789865 + MSTB1 LTR MaLR 4 430 -2 2059 131 0 0 chrX 114185167 114185469 -62788671 - AluSx SINE Alu 0 302 1 326 324 29 7 chrX 114185856 114185995 -62788145 + MLT1K LTR MaLR 132 273 -315 384 221 122 70 chrX 114186113 114186326 -62787814 + MLT1C LTR MaLR 1 224 -243 637 276 78 76 chrX 114186476 114187013 -62787127 - MLT1F LTR MaLR -4 538 1 381 117 0 0 chrX 114187233 114187293 -62786847 + (TG)n Simple_repeat Simple_repeat 2 61 0 6672 130 17 3 chrX 114187344 114189238 -62784902 - L1PA3 LINE L1 -3 6152 4244 607 186 77 13 chrX 114189244 114189400 -62784740 - L1MB8 LINE L1 -1 6177 6012 25 0 0 0 chrX 114190330 114190355 -62783785 + AT_rich Low_complexity Low_complexity 1 25 0 379 335 60 0 chrX 114191208 114191375 -62782765 - MIR SINE MIR -1 261 85 32 57 0 0 chrX 114191377 114191430 -62782710 + AT_rich Low_complexity Low_complexity 1 53 0 274 250 16 0 chrX 114191887 114191951 -62782189 - MER96 DNA MER1_type? 0 175 111 22 56 0 0 chrX 114193317 114193353 -62780787 + AT_rich Low_complexity Low_complexity 1 36 0 346 280 40 10 chrX 114193642 114193742 -62780398 - MIR3 SINE MIR -6 202 100 3352 185 40 23 chrX 114194137 114194959 -62779181 - L1MC2 LINE L1 -48 6296 5461 2132 161 13 2 chrX 114194959 114195357 -62778783 - MER6 DNA MER2_type -1 864 463 739 280 131 19 chrX 114195694 114196134 -62778006 + L2 LINE L2 2782 3313 0 439 260 78 33 chrX 114196441 114196889 -62777251 - L1MC5 LINE L1 -371 7590 7261 1806 112 18 31 chrX 114198175 114198504 -62775636 - AluSc SINE Alu 0 325 1 243 364 24 29 chrX 114198523 114198732 -62775408 - L2 LINE L2 -189 3083 2876 2293 110 7 0 chrX 114198839 114199149 -62774991 - AluSx SINE Alu 0 312 1 239 222 0 0 chrX 114199710 114199764 -62774376 + MIR3 SINE MIR 152 205 -3 2261 155 18 45 chrX 114200383 114200614 -62773526 - Tigger2a DNA MER2_type -2274 434 219 2304 72 0 29 chrX 114200614 114200921 -62773219 + AluY SINE Alu 14 311 0 2261 155 18 45 chrX 114200921 114201135 -62773005 - Tigger2a DNA MER2_type -2489 219 1 2395 238 48 25 chrX 114201222 114201971 -62772169 - L1M2c LINE L1 -4740 1721 974 275 130 0 0 chrX 114201971 114202017 -62772123 - Tigger2a DNA MER2_type -388 46 1 435 19 0 0 chrX 114203665 114203717 -62770423 + (CA)n Simple_repeat Simple_repeat 2 53 0 2299 225 8 6 chrX 114204435 114204924 -62769216 + L1M2 LINE L1 2 491 -6358 3611 270 24 20 chrX 114205203 114206262 -62767878 + L1M2 LINE L1 675 1737 -5112 738 247 10 6 chrX 114206717 114206949 -62767191 - L1 LINE L1 -2572 3574 3344 * 28153 39 38 2 chrX 114206947 114210640 -62763500 - L1P LINE L1 -2318 3828 2 1999 197 35 4 chrX 114210640 114211101 -62763039 + L1MA9 LINE L1 5803 6277 -35 236 203 40 27 chrX 114211125 114211199 -62762941 + MLT1L LTR MaLR 537 611 -4 254 330 31 10 chrX 114211203 114211300 -62762840 - MIR SINE MIR -162 100 2 3976 202 15 10 chrX 114211628 114212585 -62761555 - L1PA16 LINE L1 -1171 4975 4015 815 216 29 20 chrX 114212587 114212832 -62761308 + L1PA16 LINE L1 4942 5188 -958 1421 275 45 16 chrX 114212834 114213347 -62760793 - LTR38 LTR ERV1 -26 530 3 5244 141 8 20 chrX 114213353 114214353 -62759787 + L1PA16 LINE L1 5192 6166 0 763 258 174 30 chrX 114215075 114215409 -62758731 + L2 LINE L2 2932 3313 0 397 57 0 0 chrX 114215473 114215526 -62758614 + HERV9 LTR ERV1 846 898 -7728 272 213 0 0 chrX 114215527 114215588 -62758552 + HERV9 LTR ERV1 7504 7564 -835 * 4333 96 5 7 chrX 114215584 114216456 -62757684 + HERV9 LTR ERV1 504 8399 0 300 287 50 10 chrX 114216573 114216674 -62757466 + MIR SINE MIR 84 188 -74 423 265 45 0 chrX 114216758 114216890 -62757250 + MIR SINE MIR 76 213 -49 282 327 63 19 chrX 114217162 114217321 -62756819 + LTR33 LTR ERVL 304 469 -52 1966 140 52 22 chrX 114217347 114217711 -62756429 + THE1C LTR MaLR 1 375 0 1852 222 54 5 chrX 114217937 114218343 -62755797 + MSTB LTR MaLR 1 426 0 1109 173 0 57 chrX 114218477 114218630 -62755510 + MER46A DNA MER2_type 3 138 -2593 1328 213 92 3 chrX 114218630 114218945 -62755195 - MER7A DNA MER2_type -4 342 2 1109 173 0 57 chrX 114218945 114219039 -62755101 + MER46A DNA MER2_type 138 236 0 1430 123 92 15 chrX 114221013 114221273 -62752867 - MLT2A1 LTR ERVL 0 444 165 13279 186 27 20 chrX 114221285 114223633 -62750507 + L1MA3 LINE L1 2696 5258 -2465 2223 128 0 0 chrX 114223633 114223939 -62750201 - AluSx SINE Alu -6 306 1 13279 186 27 20 chrX 114223939 114225988 -62748152 + L1MA3 LINE L1 5258 7291 -432 1433 82 10 10 chrX 114225973 114226179 -62747961 - THE1B-int LTR MaLR -1374 206 1 * 2235 111 22 35 chrX 114226179 114226548 -62747592 - THE1B LTR MaLR 0 364 1 795 143 122 0 chrX 114226548 114226695 -62747445 + L1MA3 LINE L1 7560 7724 0 * 1873 140 7 7 chrX 114226668 114227021 -62747119 + L1MA3 LINE L1 6697 7050 -537 2789 139 91 7 chrX 114227029 114227569 -62746571 + L1MA3 LINE L1 7140 7724 0 1596 153 109 0 chrX 114227906 114228226 -62745914 - MER46B DNA MER2_type -1 235 6 213 365 0 0 chrX 114228658 114228721 -62745419 - L2 LINE L2 0 3272 3210 242 89 0 114 chrX 114228975 114229098 -62745042 + (TA)n Simple_repeat Simple_repeat 1 109 0 345 289 0 0 chrX 114229121 114229211 -62744929 - L1MC4 LINE L1 -1339 6703 6614 * 378 223 11 53 chrX 114229133 114229227 -62744913 + L1MC4 LINE L1 6614 6703 -1339 2649 190 31 2 chrX 114231348 114231985 -62742155 + L1M3 LINE L1 5135 5790 -378 2859 106 37 14 chrX 114231985 114232419 -62741721 - MLT2A1 LTR ERVL 0 444 1 2018 54 0 0 chrX 114232421 114232682 -62741458 - HERVL-A1 LTR ERVL -2 5652 5392 23 54 0 0 chrX 114232793 114232830 -62741310 + AT_rich Low_complexity Low_complexity 1 37 0 289 200 65 7 chrX 114232836 114232991 -62741149 + (TA)n Simple_repeat Simple_repeat 2 165 0 * 342 138 21 90 chrX 114232958 114233146 -62740994 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 450 266 54 9 chrX 114233207 114233429 -62740711 + L1ME1 LINE L1 2784 3015 -3131 1307 157 18 8 chrX 114233429 114233768 -62740372 + MSTB LTR MaLR 1 421 -7 3831 254 81 45 chrX 114233808 114236809 -62737331 + L1ME1 LINE L1 3052 6158 -8 634 271 94 34 chrX 114236817 114237168 -62736972 + L1M4 LINE L1 4462 4833 -1313 1957 251 38 11 chrX 114237168 114237642 -62736498 - MLT1E2 LTR MaLR 0 626 140 826 290 75 28 chrX 114237770 114238207 -62735933 + L1M4 LINE L1 4828 5292 -854 198 71 0 0 chrX 114238207 114238235 -62735905 + (TA)n Simple_repeat Simple_repeat 2 29 0 826 290 75 28 chrX 114238235 114238290 -62735850 + L1M4 LINE L1 5292 5343 -803 492 344 108 9 chrX 114239412 114239624 -62734516 + MIR SINE MIR 18 250 -12 371 299 83 28 chrX 114239880 114240024 -62734116 - MIR SINE MIR -58 204 53 625 292 68 5 chrX 114240888 114241080 -62733060 + MER63A DNA MER1_type 2 205 -5 7336 233 75 43 chrX 114241271 114241995 -62732145 + L1MB8 LINE L1 2302 3001 -3145 1546 186 4 7 chrX 114241995 114242269 -62731871 + AluJb SINE Alu 1 273 -39 7336 233 75 43 chrX 114242269 114244173 -62729967 + L1MB8 LINE L1 3001 5027 -1119 2571 117 0 0 chrX 114244173 114244558 -62729582 + L1PA13 LINE L1 5773 6157 -6 7336 233 75 43 chrX 114244558 114244719 -62729421 + L1MB8 LINE L1 5027 5181 -965 6694 139 21 7 chrX 114244720 114245995 -62728145 + L1MA1 LINE L1 5009 6302 0 3843 205 48 26 chrX 114246002 114246975 -62727165 + L1MB8 LINE L1 5183 6176 -2 492 314 48 34 chrX 114246989 114247196 -62726944 - MIR SINE MIR -6 256 47 286 313 96 0 chrX 114247443 114247526 -62726614 - L2 LINE L2 -15 3298 3208 21 36 0 0 chrX 114247974 114248002 -62726138 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 114248126 114248149 -62725991 + AT_rich Low_complexity Low_complexity 1 23 0 1889 90 42 14 chrX 114248277 114248566 -62725574 - AluSp SINE Alu -16 297 1 520 239 21 112 chrX 114249388 114249446 -62724694 - MIR SINE MIR -75 187 125 1449 175 4 0 chrX 114249446 114249697 -62724443 + L1PB4 LINE L1 5893 6144 -12 520 239 21 112 chrX 114249697 114249826 -62724314 - MIR SINE MIR -137 125 17 26 30 0 0 chrX 114251226 114251259 -62722881 + AT_rich Low_complexity Low_complexity 1 33 0 420 365 68 17 chrX 114251325 114251415 -62722725 + MER102b DNA MER1_type 2 86 -1342 195 42 0 0 chrX 114251415 114251439 -62722701 + (CAA)n Simple_repeat Simple_repeat 2 25 0 420 365 68 17 chrX 114251439 114251641 -62722499 + MER102b DNA MER1_type 86 309 -32 1170 174 82 5 chrX 114252674 114252893 -62721247 - MER46A DNA MER2_type 0 236 1 185 254 127 0 chrX 114253295 114253350 -62720790 - MIR SINE MIR -10 252 191 492 296 31 12 chrX 114253427 114253589 -62720551 - MIR SINE MIR -94 168 4 233 282 84 0 chrX 114254362 114254433 -62719707 + MIR SINE MIR 121 197 -65 1816 191 0 6 chrX 114254638 114254952 -62719188 + AluJo SINE Alu 1 312 0 261 0 0 0 chrX 114255213 114255242 -62718898 + (A)n Simple_repeat Simple_repeat 1 29 0 1691 200 19 32 chrX 114255339 114255709 -62718431 + MLT1A1 LTR MaLR 1 365 0 460 242 0 0 chrX 114255762 114255861 -62718279 - MER58B DNA MER1_type 0 341 243 1730 109 11 8 chrX 114255862 114256127 -62718013 - MER11A LTR ERVK 0 1266 1001 1794 77 56 70 chrX 114307322 114307651 -62666489 - AluSc SINE Alu 0 325 1 232 364 24 29 chrX 114307670 114307879 -62666261 - L2 LINE L2 -189 3083 2876 2260 110 7 0 chrX 114307986 114308296 -62665844 - AluSx SINE Alu 0 312 1 237 222 0 0 chrX 114308857 114308911 -62665229 + MIR3 SINE MIR 152 205 -3 2292 155 18 40 chrX 114309529 114309758 -62664382 - Tigger2a DNA MER2_type -2274 434 218 2399 68 0 26 chrX 114309758 114310068 -62664072 + AluY SINE Alu 10 311 0 2292 155 18 40 chrX 114310068 114310282 -62663858 - Tigger2a DNA MER2_type -2490 218 1 231 51 128 0 chrX 114310328 114310367 -62663773 - L1PA11 LINE L1 -1 6173 6130 2620 238 48 25 chrX 114310369 114311118 -62663022 - L1M2c LINE L1 -4740 1721 974 289 130 0 0 chrX 114311118 114311164 -62662976 - Tigger2a DNA MER2_type -388 46 1 417 20 0 0 chrX 114312813 114312863 -62661277 + (CA)n Simple_repeat Simple_repeat 2 51 0 11531 193 29 66 chrX 114313581 114316880 -62657260 + L1MA4A LINE L1 2 3419 -3586 1658 125 62 88 chrX 114316880 114317264 -62656876 - THE1C LTR MaLR -1 374 1 11531 193 29 66 chrX 114317264 114321331 -62652809 + L1MA4A LINE L1 3419 7000 -5 3757 167 31 45 chrX 114322728 114323524 -62650616 - LTR1 LTR ERV1 0 785 1 797 285 60 65 chrX 114323935 114324304 -62649836 + MLT1I LTR MaLR 41 407 -2 238 262 24 24 chrX 114324367 114324451 -62649689 + L1ME4a LINE L1 5725 5808 -2000 485 105 116 0 chrX 114324451 114324537 -62649603 + MER4A LTR ERV1 1 96 -568 1736 127 191 72 chrX 114324539 114324900 -62649240 + MER4A LTR ERV1 261 664 0 233 287 96 0 chrX 114324900 114325015 -62649125 + L1ME4a LINE L1 5807 5932 -189 231 234 121 24 chrX 114325033 114325157 -62648983 + L1ME4a LINE L1 5986 6121 0 453 261 43 17 chrX 114326021 114326136 -62648004 - L2 LINE L2 0 3272 3155 180 367 67 46 chrX 114326201 114326572 -62647568 - L2 LINE L2 -568 2746 2368 318 232 95 60 chrX 114326720 114326888 -62647252 - MER104 DNA Tc2 -3 177 4 333 327 6 26 chrX 114326891 114327047 -62647093 + L2 LINE L2 3149 3301 -12 190 390 28 79 chrX 114327088 114327265 -62646875 - L2 LINE L2 -75 3197 3030 1452 238 14 14 chrX 114327333 114327698 -62646442 - MLT1A1 LTR MaLR 0 365 1 6937 214 56 62 chrX 114327704 114329442 -62644698 - MLT1A1-int LTR MaLR -7 1728 1 1435 230 48 26 chrX 114329442 114329786 -62644354 - MLT1A1 LTR MaLR 0 365 14 1921 153 20 98 chrX 114329786 114330245 -62643895 + LTR8 LTR ERV1 1 423 -268 1320 82 10 51 chrX 114330270 114330465 -62643675 + AluY SINE Alu 1 187 -124 234 0 0 0 chrX 114330473 114330499 -62643641 + (A)n Simple_repeat Simple_repeat 1 26 0 1437 123 26 56 chrX 114330499 114330768 -62643372 + LTR8 LTR ERV1 431 691 0 330 368 8 0 chrX 114330825 114330950 -62643190 - L2 LINE L2 -376 2938 2813 1744 165 0 45 chrX 114331011 114331320 -62642820 + AluSx SINE Alu 1 295 -17 2413 158 47 28 chrX 114331338 114331844 -62642296 - L1MB7 LINE L1 -57 6127 5612 641 367 34 23 chrX 114331889 114332243 -62641897 - L2 LINE L2 -494 2820 2463 211 349 0 0 chrX 114332257 114332323 -62641817 - L2 LINE L2 -1415 1899 1834 * 712 204 44 89 chrX 114332314 114332539 -62641601 - L2 LINE L2 0 3313 3099 1127 201 35 8 chrX 114332556 114332810 -62641330 - MIR SINE MIR 0 262 2 1360 167 20 140 chrX 114332984 114333326 -62640814 + AluJb SINE Alu 1 301 -1 2145 125 7 0 chrX 114333550 114333839 -62640301 + AluSx SINE Alu 1 291 -21 2287 98 0 0 chrX 114334915 114335211 -62638929 - AluY SINE Alu -15 296 1 1337 172 87 54 chrX 114335812 114336144 -62637996 + MER2 DNA MER2_type 2 344 0 229 334 84 0 chrX 114337548 114337662 -62636478 + MIR SINE MIR 42 165 -68 216 262 0 0 chrX 114337974 114338016 -62636124 + polypurine Low_complexity Low_complexity 4 45 0 187 400 12 0 chrX 114339636 114339721 -62634419 - L2 LINE L2 -1 3271 3186 348 269 31 39 chrX 114339754 114339884 -62634256 - MLT1H LTR MaLR -16 533 405 307 325 35 61 chrX 114339891 114340119 -62634021 - MLT1I LTR MaLR -108 301 80 2045 93 34 0 chrX 114340838 114341107 -62633033 - AluSx SINE Alu 0 312 35 2171 156 8 16 chrX 114341751 114342129 -62632011 - THE1C LTR MaLR 0 375 1 10164 119 16 28 chrX 114342129 114343729 -62630411 - THE1C-int LTR MaLR 0 1580 1 2035 140 26 34 chrX 114343729 114344107 -62630033 - THE1C LTR MaLR 0 375 1 740 194 116 3 chrX 114344494 114344719 -62629421 + L1ME3A LINE L1 5692 5947 -223 2625 158 60 42 chrX 114344750 114345350 -62628790 + MER45B DNA AcHobo 399 1009 -31 6514 141 11 21 chrX 114345350 114346501 -62627639 - L1MA1 LINE L1 -3 6299 5139 2072 136 10 3 chrX 114346501 114346809 -62627331 - AluSq SINE Alu -3 310 1 6514 141 11 21 chrX 114346809 114346932 -62627208 - L1MA1 LINE L1 -1163 5139 5016 539 40 14 0 chrX 114346932 114347006 -62627134 + (TTTTA)n Simple_repeat Simple_repeat 1 75 0 6514 141 11 21 chrX 114347006 114347727 -62626413 - L1PA6 LINE L1 -1286 5016 4326 7172 46 5 0 chrX 114347735 114348881 -62625259 + L1PA6 LINE L1 5000 6149 -5 1833 157 28 0 chrX 114349240 114349558 -62624582 - L1MA1 LINE L1 -1812 4334 4008 428 175 0 12 chrX 114349558 114349638 -62624502 + MER45B DNA AcHobo 957 1035 -5 317 300 20 10 chrX 114350212 114350312 -62623828 - MIR3 SINE MIR -9 199 99 325 336 207 9 chrX 114350316 114350548 -62623592 - L3 LINE CR1 -9 1568 1291 244 305 0 0 chrX 114350618 114350677 -62623463 - MIR SINE MIR -112 96 38 369 0 0 0 chrX 114350999 114351040 -62623100 + (CA)n Simple_repeat Simple_repeat 2 42 0 585 222 98 36 chrX 114351225 114351419 -62622721 - MIR SINE MIR 0 262 57 401 217 0 12 chrX 114351755 114351838 -62622302 + L2 LINE L2 3232 3313 0 392 194 97 0 chrX 114353219 114353312 -62620828 + MLT2C2 LTR ERVL 1 102 -362 231 154 0 0 chrX 114353314 114353353 -62620787 + MLT2C1 LTR ERVL 352 390 -7 208 272 0 76 chrX 114353408 114353462 -62620678 + MIR SINE MIR 96 142 -120 1974 156 38 27 chrX 114353462 114353833 -62620307 + THE1C LTR MaLR 1 375 0 208 272 0 76 chrX 114353833 114353870 -62620270 + MIR SINE MIR 142 180 -82 353 264 122 16 chrX 114354557 114354866 -62619274 + L1M2 LINE L1 5104 5447 -740 1826 188 9 13 chrX 114354866 114355239 -62618901 + MER47B DNA MER2_type 1 418 0 430 339 18 14 chrX 114355425 114355702 -62618438 + L1MC4a LINE L1 5646 5923 -1885 1018 237 4 36 chrX 114356418 114356697 -62617443 + L1M3e LINE L1 7 276 -6754 2401 268 57 45 chrX 114356707 114357594 -62616546 + L1M3e LINE L1 1081 1956 -5150 1633 168 6 72 chrX 114357594 114357728 -62616412 + AluJb SINE Alu 1 142 -170 2107 111 0 0 chrX 114357728 114358007 -62616133 + AluSx SINE Alu 11 289 -23 1633 168 6 72 chrX 114358007 114358206 -62615934 + AluJb SINE Alu 142 312 0 2401 268 57 45 chrX 114358206 114359102 -62615038 + L1M3e LINE L1 1956 2840 -4266 2028 96 57 0 chrX 114359102 114359383 -62614757 + AluSg SINE Alu 1 297 -13 2401 268 57 45 chrX 114359383 114360500 -62613640 + L1M3e LINE L1 2840 3746 -3360 24 0 0 0 chrX 114360528 114360552 -62613588 + AT_rich Low_complexity Low_complexity 1 24 0 7974 159 49 12 chrX 114360552 114363067 -62611073 - L1MA2 LINE L1 -4 6300 3692 4248 144 10 0 chrX 114363071 114363764 -62610376 - L1PA13 LINE L1 -4 6159 5460 12997 184 17 17 chrX 114363764 114364525 -62609615 + L1PB1 LINE L1 2199 2959 -3192 2005 187 60 34 chrX 114364525 114365023 -62609117 - MER9 LTR ERVK 0 511 1 12997 184 17 17 chrX 114365023 114367177 -62606963 + L1PB1 LINE L1 2959 5114 -1037 8011 25 1 0 chrX 114367177 114368886 -62605254 + L1PA3 LINE L1 4443 6152 -3 12997 184 17 17 chrX 114368886 114369922 -62604218 + L1PB1 LINE L1 5114 6149 -2 4823 175 41 10 chrX 114369930 114371107 -62603033 - L1PA13 LINE L1 -688 5475 4279 346 211 19 118 chrX 114371102 114371180 -62602960 - L1MA2 LINE L1 -3218 2928 2873 * 2192 131 0 0 chrX 114371180 114371477 -62602663 - AluSx SINE Alu -15 297 1 346 211 19 118 chrX 114371477 114371559 -62602581 - L1MA2 LINE L1 -3273 2873 2784 4101 172 32 30 chrX 114371592 114371815 -62602325 + L1MB1 LINE L1 4438 4659 -1509 1826 99 40 4 chrX 114371815 114372067 -62602073 + AluSg SINE Alu 1 261 -49 4101 172 32 30 chrX 114372067 114373576 -62600564 + L1MB1 LINE L1 4659 6168 0 5216 107 29 8 chrX 114373638 114374402 -62599738 - LTR17 LTR ERV1 0 780 1 272 244 22 37 chrX 114374743 114374878 -62599262 + L1ME LINE L1 4214 4346 -1800 28 48 0 0 chrX 114375384 114375426 -62598714 + AT_rich Low_complexity Low_complexity 1 42 0 359 293 86 31 chrX 114376310 114376634 -62597506 + L1ME LINE L1 5326 5667 -454 2363 129 11 11 chrX 114376740 114377113 -62597027 - THE1C LTR MaLR -2 373 1 2025 251 50 35 chrX 114377277 114378066 -62596074 - L1M4 LINE L1 -2694 3452 2641 698 222 18 84 chrX 114378066 114378291 -62595849 + MER63A DNA MER1_type 1 210 0 2025 251 50 35 chrX 114378291 114378588 -62595552 - L1M4 LINE L1 -3505 2641 2350 6608 75 0 2 chrX 114378725 114379930 -62594210 - L1PA13 LINE L1 -3 6160 4951 570 272 84 4 chrX 114379953 114380192 -62593948 + MER20B DNA MER1_type 386 643 -140 30 27 0 0 chrX 114380260 114380297 -62593843 + AT_rich Low_complexity Low_complexity 1 37 0 877 286 37 5 chrX 114380844 114381061 -62593079 + MIR SINE MIR 2 225 -37 462 279 85 8 chrX 114381287 114381416 -62592724 - L2 LINE L2 -9 3304 3166 2223 75 246 6 chrX 114382015 114382376 -62591764 + LTR7 LTR ERV1 1 448 -2 16973 105 41 25 chrX 114382379 114385328 -62588812 + HERVH LTR ERV1 1 2995 -4718 3444 96 0 0 chrX 114385307 114385806 -62588334 + HERVH LTR ERV1 3140 3638 -4075 * 3716 67 17 9 chrX 114385798 114386336 -62587804 + HERVH LTR ERV1 7172 7713 0 2849 65 92 5 chrX 114386336 114386748 -62587392 + LTR7 LTR ERV1 1 448 -2 432 386 31 23 chrX 114386807 114387096 -62587044 - L2 LINE L2 -225 3047 2752 237 330 123 19 chrX 114387795 114387901 -62586239 + L2 LINE L2 3154 3270 -2 248 350 41 82 chrX 114388458 114388678 -62585462 + L2 LINE L2 3015 3225 -47 * 396 332 135 31 chrX 114388665 114389087 -62585053 + L2 LINE L2 2806 3271 -1 246 426 26 0 chrX 114389434 114389624 -62584516 - L2 LINE L2 -223 3049 2855 244 346 10 10 chrX 114390607 114390708 -62583432 - MIR3 SINE MIR -25 183 83 320 271 35 12 chrX 114390721 114390806 -62583334 - MER91C DNA MER1_type -53 87 1 646 278 44 0 chrX 114390848 114391028 -62583112 + MIR SINE MIR 1 188 -74 820 261 73 8 chrX 114391240 114391474 -62582666 - MIR SINE MIR -6 256 8 26 50 0 0 chrX 114392139 114392179 -62581961 + AT_rich Low_complexity Low_complexity 1 40 0 1744 177 19 6 chrX 114392506 114392828 -62581312 - MER58B DNA MER1_type -15 326 1 540 148 79 0 chrX 114392873 114392974 -62581166 - L1MC1 LINE L1 -1 6332 6224 198 0 0 0 chrX 114393154 114393176 -62580964 + (A)n Simple_repeat Simple_repeat 1 22 0 445 244 8 59 chrX 114393551 114393670 -62580470 + L2 LINE L2 3140 3252 -20 436 262 131 8 chrX 114393685 114393807 -62580333 + MIR SINE MIR 15 151 -111 21 36 0 0 chrX 114393822 114393850 -62580290 + AT_rich Low_complexity Low_complexity 1 28 0 536 231 56 0 chrX 114394113 114394221 -62579919 + MER81 DNA DNA 1 114 0 590 345 66 4 chrX 114395039 114395265 -62578875 - MIR SINE MIR -8 254 15 2334 92 0 0 chrX 114395387 114395680 -62578460 - AluSc SINE Alu -16 293 1 458 333 139 17 chrX 114395824 114396112 -62578028 - L3 LINE CR1 -3 1574 1252 * 545 249 279 5 chrX 114396109 114396310 -62577830 - MIR SINE MIR -5 257 2 240 382 91 10 chrX 114396311 114396510 -62577630 - L3 LINE CR1 -342 1235 1021 574 276 75 27 chrX 114396511 114396977 -62577163 + LTR33 LTR ERVL 4 521 0 240 366 27 45 chrX 114397010 114397122 -62577018 + L3 LINE CR1 1454 1563 -14 631 62 0 0 chrX 114398010 114398090 -62576050 + MADE1 DNA Mariner 1 80 0 487 308 84 10 chrX 114398283 114398499 -62575641 + MIR SINE MIR 20 250 -12 2176 129 0 0 chrX 114398514 114398817 -62575323 - AluSx SINE Alu -9 303 1 2333 84 0 3 chrX 114399926 114400224 -62573916 + AluSg SINE Alu 1 297 -13 216 342 171 13 chrX 114401044 114401202 -62572938 - L2 LINE L2 -210 3062 2880 690 103 0 17 chrX 114401239 114401356 -62572784 - L1MB3 LINE L1 0 6183 6069 1830 155 20 26 chrX 114401386 114401727 -62572413 + MER44D DNA MER2_type 1 609 0 184 396 0 0 chrX 114401732 114401823 -62572317 - L2 LINE L2 -499 2815 2725 428 285 87 52 chrX 114401867 114402039 -62572101 + MER5B DNA MER1_type 1 178 0 804 233 50 0 chrX 114402047 114402227 -62571913 + MER5A DNA MER1_type 1 189 0 2167 158 16 91 chrX 114403289 114403783 -62570357 - LTR32 LTR ERVL 0 471 15 553 279 7 39 chrX 114403838 114403962 -62570178 - MER5B DNA MER1_type 0 178 58 1880 123 52 73 chrX 114403962 114404345 -62569795 - THE1C LTR MaLR 0 375 1 553 279 7 39 chrX 114404345 114404374 -62569766 - MER5B DNA MER1_type -120 58 30 2146 120 0 10 chrX 114404523 114404831 -62569309 + AluSx SINE Alu 1 305 -7 23 0 0 0 chrX 114405523 114405546 -62568594 + AT_rich Low_complexity Low_complexity 1 23 0 3416 122 2 9 chrX 114405546 114406077 -62568063 - L1PB3 LINE L1 -3 6151 5625 1707 190 6 3 chrX 114406081 114406445 -62567695 - L1 LINE L1 -2283 3863 3499 190 291 91 0 chrX 114406574 114406629 -62567511 - L2 LINE L2 -7 3306 3247 * 334 276 26 44 chrX 114406623 114406816 -62567324 + MIR SINE MIR 34 220 -42 412 373 0 0 chrX 114408959 114409093 -62565047 - MER5A DNA MER1_type -1 188 55 305 331 15 23 chrX 114408984 114409114 -62565026 + MER5A DNA MER1_type 38 166 -23 * 217 260 68 27 chrX 114409632 114409705 -62564435 + MIR3 SINE MIR 4 79 -129 228 111 0 0 chrX 114409921 114409957 -62564183 + (A)n Simple_repeat Simple_repeat 1 36 0 504 0 0 0 chrX 114410820 114410876 -62563264 + (TTTTG)n Simple_repeat Simple_repeat 2 57 0 970 306 147 31 chrX 114411171 114411743 -62562397 + L3 LINE CR1 375 1012 -565 490 281 34 13 chrX 114411832 114412021 -62562119 + MER20B DNA MER1_type 4 198 -21 377 272 117 33 chrX 114412035 114412215 -62561925 + L3 LINE CR1 1103 1297 -280 613 247 50 33 chrX 114412290 114412472 -62561668 - MIR SINE MIR -77 185 1 393 307 245 14 chrX 114412499 114412711 -62561429 + L3 LINE CR1 1302 1562 -15 1017 277 74 34 chrX 114413405 114413853 -62560287 - MLT1J LTR MaLR -43 468 3 286 300 82 18 chrX 114415256 114415366 -62558774 - MIR SINE MIR -98 164 48 200 357 51 0 chrX 114415447 114415545 -62558595 + MIR SINE MIR 154 256 -6 180 270 0 111 chrX 114415560 114415623 -62558517 + MIR SINE MIR 2 57 -205 893 264 43 9 chrX 114415638 114415869 -62558271 + MIR SINE MIR 2 240 -22 422 296 166 0 chrX 114415903 114416072 -62558068 + MIR SINE MIR 66 262 0 388 279 0 12 chrX 114416191 114416277 -62557863 + MER5B DNA MER1_type 94 178 0 1077 243 136 56 chrX 114416695 114417197 -62556943 + MLT1F LTR MaLR 1 542 0 685 220 16 106 chrX 114417270 114417338 -62556802 - MIR SINE MIR 0 262 189 2249 105 3 0 chrX 114417338 114417632 -62556508 - AluSx SINE Alu -17 295 1 685 220 16 106 chrX 114417632 114417818 -62556322 - MIR SINE MIR -73 189 31 616 303 37 0 chrX 114417834 114418016 -62556124 + MIR SINE MIR 38 223 -39 1443 270 6 3 chrX 114418045 114418401 -62555739 - MER115 DNA AcHobo -1 692 336 430 300 0 25 chrX 114418513 114418633 -62555507 - MER115 DNA AcHobo -571 122 6 299 326 0 0 chrX 114419723 114419815 -62554325 + L3 LINE CR1 900 991 -586 668 264 67 10 chrX 114419849 114420042 -62554098 - MIR SINE MIR -15 247 44 503 274 59 0 chrX 114420077 114420212 -62553928 + L3 LINE CR1 1084 1226 -351 431 323 8 0 chrX 114420217 114420344 -62553796 + L2 LINE L2 3186 3313 0 384 317 122 22 chrX 114420387 114420567 -62553573 + L3 LINE CR1 1245 1442 -135 841 165 0 0 chrX 114420719 114420852 -62553288 - FLAM_A SINE Alu 0 133 1 522 125 34 0 chrX 114420992 114421080 -62553060 - L1MA3 LINE L1 0 6305 6215 212 271 0 17 chrX 114422624 114422683 -62551457 + GA-rich Low_complexity Low_complexity 2 59 0 379 286 141 26 chrX 114422695 114422887 -62551253 - MIR SINE MIR -12 250 37 296 346 20 0 chrX 114423479 114423580 -62550560 - MIR3 SINE MIR -14 194 92 196 235 167 69 chrX 114423593 114423695 -62550445 - L2 LINE L2 -2 3311 3200 1976 140 11 0 chrX 114423721 114424027 -62550113 - AluSx SINE Alu 0 309 1 195 377 99 14 chrX 114424974 114425197 -62548943 - L2 LINE L2 -224 3048 2807 543 309 55 10 chrX 114425346 114425547 -62548593 + MIR SINE MIR 52 261 -1 1914 160 3 0 chrX 114425640 114425922 -62548218 + AluSx SINE Alu 1 283 -29 519 17 0 0 chrX 114425923 114425983 -62548157 + (CATA)n Simple_repeat Simple_repeat 3 62 0 226 139 116 0 chrX 114429215 114429258 -62544882 + L2 LINE L2 3200 3247 -25 324 273 50 50 chrX 114429710 114429794 -62544346 + L2 LINE L2 3174 3260 -12 336 102 0 0 chrX 114429794 114429843 -62544297 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 324 273 50 50 chrX 114429843 114429857 -62544283 + L2 LINE L2 3259 3272 0 1964 34 0 0 chrX 114429960 114430194 -62543946 - L1PA3 LINE L1 -3 6152 5919 6879 25 2 0 chrX 114430194 114431415 -62542725 + L1P1 LINE L1 4577 5800 -355 1141 293 19 44 chrX 114431701 114432114 -62542026 + MLT1I LTR MaLR 7 409 0 449 314 17 34 chrX 114432637 114432812 -62541328 - MIR SINE MIR -71 191 20 2381 94 0 0 chrX 114433418 114433725 -62540415 - AluSg SINE Alu -2 308 2 1860 199 133 2 chrX 114434752 114435195 -62538945 - MLT1D LTR MaLR 0 505 5 727 205 0 0 chrX 114435463 114435590 -62538550 + FLAM_A SINE Alu 1 127 -6 2015 108 0 37 chrX 114435704 114435999 -62538141 + AluSx SINE Alu 9 292 -20 543 273 39 7 chrX 114436887 114437041 -62537099 - MER45A DNA AcHobo 0 178 20 231 333 101 0 chrX 114440544 114440673 -62533467 + L2 LINE L2 2929 3070 -202 333 275 160 49 chrX 114441518 114441685 -62532455 + L1MEc LINE L1 1201 1405 -5316 2193 111 3 0 chrX 114441685 114441982 -62532158 - AluSq SINE Alu -15 298 1 333 275 160 49 chrX 114441982 114442058 -62532082 + L1MEc LINE L1 1405 1471 -5250 242 202 91 58 chrX 114442062 114442270 -62531870 + L1MEc LINE L1 1544 1726 -4814 356 306 30 47 chrX 114442401 114442702 -62531438 + L1MEc LINE L1 1842 2137 -4584 745 285 109 22 chrX 114442844 114443776 -62530364 + L1MEc LINE L1 2360 3327 -3213 6359 211 36 20 chrX 114443784 114447441 -62526699 + L1M3f LINE L1 7 3699 -2629 5099 240 18 132 chrX 114447443 114449450 -62524690 + L1M2 LINE L1 12 1791 -5058 7915 212 32 9 chrX 114449463 114453450 -62520690 - L1MA2 LINE L1 0 7723 3828 1959 59 0 0 chrX 114453450 114453688 -62520452 + AluY SINE Alu 1 238 -73 225 0 0 0 chrX 114453689 114453714 -62520426 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 7915 212 32 9 chrX 114453714 114454393 -62519747 - L1MA2 LINE L1 -3894 3829 2921 2256 134 6 0 chrX 114454392 114454750 -62519390 - MSTA-int LTR MaLR -1291 360 1 * 1536 186 161 11 chrX 114454750 114455122 -62519018 - MSTA LTR MaLR 0 428 1 3250 216 88 47 chrX 114455124 114455952 -62518188 + L1M2 LINE L1 2820 3709 -3139 7400 23 1 0 chrX 114455952 114456837 -62517303 + L1PA3 LINE L1 5285 6170 0 3250 216 88 47 chrX 114456837 114457138 -62517002 + L1M2 LINE L1 3709 3996 -2852 7156 214 58 9 chrX 114457143 114457470 -62516670 + L1MA9 LINE L1 2606 2915 -3231 1781 176 0 0 chrX 114457470 114457759 -62516381 + AluSx SINE Alu 24 312 0 7156 214 58 9 chrX 114457759 114459346 -62514794 + L1MA9 LINE L1 2915 4614 -1532 6314 92 17 0 chrX 114459346 114460908 -62513232 - L1PA10 LINE L1 -3 6165 4579 2181 186 8 1 chrX 114460908 114461392 -62512748 - L1PA13 LINE L1 -4460 2337 1840 4055 180 20 3 chrX 114461399 114462605 -62511535 + L1MA9 LINE L1 4558 5783 -529 313 212 0 0 chrX 114462605 114462671 -62511469 + MER46B DNA MER2_type 1 66 -295 20396 29 0 0 chrX 114462671 114465130 -62509010 - L1HS LINE L1 -1698 4448 1990 8192 13 0 0 chrX 114465129 114466851 -62507289 + L1HS LINE L1 4434 6155 0 * 1725 130 48 20 chrX 114466859 114467151 -62506989 + MER46B DNA MER2_type 60 234 -2 420 20 0 0 chrX 114467151 114467200 -62506940 + (TG)n Simple_repeat Simple_repeat 2 50 0 2828 127 44 10 chrX 114467200 114467698 -62506442 + L1MA9 LINE L1 5798 6312 0 944 207 67 10 chrX 114467705 114467996 -62506144 + L1ME LINE L1 5204 5520 -642 26 50 0 0 chrX 114468626 114468666 -62505474 + AT_rich Low_complexity Low_complexity 1 40 0 2758 211 15 28 chrX 114469605 114470216 -62503924 + MER77 LTR ERV1 1 603 -2 209 246 0 18 chrX 114470263 114470320 -62503820 + (TA)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chrX 114470617 114470645 -62503495 + AT_rich Low_complexity Low_complexity 1 28 0 200 188 0 0 chrX 114471818 114471850 -62502290 - L2 LINE L2 -34 3279 3248 289 316 50 0 chrX 114472520 114472659 -62501481 + L1ME4a LINE L1 5954 6099 -22 215 246 92 31 chrX 114472776 114472841 -62501299 + L2 LINE L2 3203 3271 -1 199 195 0 0 chrX 114474532 114474573 -62499567 + MIR SINE MIR 115 155 -107 2610 48 0 7 chrX 114474581 114474891 -62499249 + AluY SINE Alu 1 308 -3 215 211 0 0 chrX 114475303 114475341 -62498799 + (CA)n Simple_repeat Simple_repeat 2 39 0 409 276 0 0 chrX 114475391 114475478 -62498662 - MIR SINE MIR -21 241 155 18550 177 26 14 chrX 114475757 114479040 -62495100 + L1M1 LINE L1 15 3258 -4307 2165 96 10 7 chrX 114479040 114479332 -62494808 + AluSx SINE Alu 1 293 -19 18550 177 26 14 chrX 114479332 114480385 -62493755 + L1M1 LINE L1 3258 4414 -3151 2380 99 0 0 chrX 114480385 114480679 -62493461 + AluSg SINE Alu 3 296 -14 18550 177 26 14 chrX 114480679 114480874 -62493266 + L1M1 LINE L1 4414 4605 -2960 516 293 65 70 chrX 114480974 114481315 -62492825 - MLT1I LTR MaLR -19 390 52 3655 164 42 45 chrX 114481730 114482517 -62491623 + LTR1 LTR ERV1 1 785 0 7805 177 39 4 chrX 114483896 114486624 -62487516 - L1MA4A LINE L1 -5 7000 4191 4292 220 34 17 chrX 114486982 114487934 -62486206 - L1MA4A LINE L1 -2639 4209 3224 1615 120 68 89 chrX 114487934 114488316 -62485824 + THE1C LTR MaLR 1 374 -1 4292 220 34 17 chrX 114488316 114488769 -62485371 - L1MA4A LINE L1 -3624 3224 2780 7083 107 17 14 chrX 114488869 114490050 -62484090 + HERVH LTR ERV1 1811 2995 -4718 3334 97 6 0 chrX 114490029 114490525 -62483615 + HERVH LTR ERV1 3140 3638 -4075 * 3503 68 28 9 chrX 114490517 114491049 -62483091 + HERVH LTR ERV1 7172 7713 0 2678 71 103 5 chrX 114491049 114491457 -62482683 + LTR7 LTR ERV1 1 448 -2 4334 121 55 38 chrX 114491460 114492868 -62481272 + HERVH LTR ERV1 1 1488 -6225 2128 116 25 3 chrX 114542869 114543196 -62430944 + L1PA13 LINE L1 5826 6159 -4 5734 123 30 23 chrX 114543196 114543916 -62430224 + L1MA3 LINE L1 5323 6053 -252 2122 128 3 0 chrX 114543916 114544204 -62429936 + AluSq SINE Alu 4 292 -21 5734 123 30 23 chrX 114544204 114544449 -62429691 + L1MA3 LINE L1 6053 6295 -10 328 263 0 0 chrX 114545511 114545587 -62428553 + MIR SINE MIR 186 261 -1 776 306 36 4 chrX 114545796 114546048 -62428092 + MIR SINE MIR 2 261 -1 640 264 42 18 chrX 114546893 114547081 -62427059 + MIR SINE MIR 3 194 -65 393 299 0 34 chrX 114547086 114547203 -62426937 - L2 LINE L2 -4 3309 3197 327 377 66 5 chrX 114547443 114547655 -62426485 - L2 LINE L2 -397 2917 2693 565 243 106 58 chrX 114547969 114548158 -62425982 + L1ME3 LINE L1 5973 6162 0 1138 309 87 23 chrX 114548166 114548217 -62425923 - L2 LINE L2 -624 2690 2644 1853 81 8 35 chrX 114548217 114548478 -62425662 + AluSp SINE Alu 43 296 -17 1138 309 87 23 chrX 114548478 114548944 -62425196 - L2 LINE L2 -670 2644 2140 184 291 18 0 chrX 114548946 114549001 -62425139 + MIR SINE MIR 201 256 -6 213 196 20 39 chrX 114549194 114549245 -62424895 - L2 LINE L2 -4 3268 3219 906 240 73 9 chrX 114549274 114549507 -62424633 - MIR SINE MIR -12 250 3 851 228 35 39 chrX 114549605 114549837 -62424303 - MIR SINE MIR 0 262 32 184 388 35 17 chrX 114549853 114549969 -62424171 - L2 LINE L2 -212 3060 2943 213 65 0 0 chrX 114550936 114550967 -62423173 + (GA)n Simple_repeat Simple_repeat 2 32 0 283 344 79 47 chrX 114551571 114551786 -62422354 - L2 LINE L2 -53 3219 2998 704 251 93 50 chrX 114552017 114552435 -62421705 + HAL1b LINE L1 53 488 -860 397 300 30 30 chrX 114552580 114552780 -62421360 + HAL1b LINE L1 679 878 -470 696 145 0 8 chrX 114552838 114552955 -62421185 - AluJb SINE Alu -196 116 1 2447 91 0 0 chrX 114553073 114553381 -62420759 + AluSg SINE Alu 1 308 -2 216 97 0 0 chrX 114553589 114553620 -62420520 + (TC)n Simple_repeat Simple_repeat 1 31 0 2117 68 103 0 chrX 114553675 114553956 -62420184 + AluY SINE Alu 1 310 -1 2405 70 0 7 chrX 114554132 114554434 -62419706 - AluY SINE Alu -11 300 1 7222 187 26 34 chrX 114554720 114556307 -62417833 + L1PB3 LINE L1 1 1538 -4790 2400 60 3 3 chrX 114556307 114556607 -62417533 + AluY SINE Alu 1 300 -11 7222 187 26 34 chrX 114556607 114557493 -62416647 + L1PB3 LINE L1 1538 2430 -3898 16417 186 33 40 chrX 114557498 114557868 -62416272 + L1M1 LINE L1 17 388 -7177 2485 147 47 2 chrX 114557868 114558276 -62415864 - MSTA LTR MaLR -2 426 1 16417 186 33 40 chrX 114558276 114560887 -62413253 + L1M1 LINE L1 388 3188 -4377 745 102 0 0 chrX 114560887 114561008 -62413132 + AluSg/x SINE Alu 184 304 0 16417 186 33 40 chrX 114561008 114562959 -62411181 + L1M1 LINE L1 3188 5152 -2413 391 242 0 0 chrX 114562955 114563075 -62411065 + L1PB3 LINE L1 3361 3480 -2848 * 9355 169 17 16 chrX 114565357 114567844 -62406296 + L1PB3 LINE L1 3485 5973 -363 423 98 0 0 chrX 114567844 114567905 -62406235 + (TA)n Simple_repeat Simple_repeat 2 62 0 9355 169 17 16 chrX 114567905 114568268 -62405872 + L1PB3 LINE L1 5973 6334 -2 241 234 0 0 chrX 114568280 114568327 -62405813 + MER3 DNA MER1_type 159 205 -4 429 307 0 39 chrX 114568474 114569108 -62405032 + (TA)n Simple_repeat Simple_repeat 1 609 0 354 241 0 45 chrX 114569138 114569250 -62404890 - L1M4 LINE L1 -3896 2250 2144 21 36 0 0 chrX 114569381 114569409 -62404731 + AT_rich Low_complexity Low_complexity 1 28 0 569 252 94 81 chrX 114569500 114570083 -62404057 - HAL1b LINE L1 -528 820 230 4077 127 12 84 chrX 114570153 114570585 -62403555 - LTR25 LTR ERV1 -10 784 441 2276 100 0 10 chrX 114570585 114570895 -62403245 - AluSg SINE Alu -3 307 1 4077 127 12 84 chrX 114570895 114571307 -62402833 - LTR25 LTR ERV1 -353 441 1 297 292 16 23 chrX 114571548 114571690 -62402450 + L1ME4a LINE L1 5673 5816 -305 396 0 0 0 chrX 114571798 114571842 -62402298 + (TG)n Simple_repeat Simple_repeat 2 45 0 304 260 126 0 chrX 114572001 114572128 -62402012 + L1ME4a LINE L1 5911 6053 -68 2906 0 0 0 chrX 114572466 114572777 -62401363 - AluYa5 SINE Alu 0 311 1 207 413 0 0 chrX 114574696 114574776 -62399364 + MIR SINE MIR 37 116 -92 2310 59 0 0 chrX 114574852 114575142 -62398998 + L1PA6 LINE L1 5865 6154 0 273 233 48 82 chrX 114575257 114575403 -62398737 - L2 LINE L2 -55 3258 3118 2359 107 8 6 chrX 114575965 114576319 -62397821 - THE1A LTR MaLR 0 355 1 1934 59 92 48 chrX 114576503 114576814 -62397326 + AluY SINE Alu 2 324 0 671 257 17 0 chrX 114576918 114577093 -62397047 - MER5B DNA MER1_type 0 178 1 242 306 0 0 chrX 114577629 114577678 -62396462 - L3 LINE CR1 -13 1564 1516 * 358 309 57 46 chrX 114577672 114577847 -62396293 + MER5A DNA MER1_type 7 183 -6 * 548 305 13 13 chrX 114577839 114577993 -62396147 - MIR3 SINE MIR -39 169 16 262 195 26 0 chrX 114579448 114579525 -62394615 + CT-rich Low_complexity Low_complexity 2 80 0 204 97 0 0 chrX 114579526 114579557 -62394583 + (CA)n Simple_repeat Simple_repeat 2 32 0 3686 254 74 20 chrX 114579835 114581207 -62392933 + L2 LINE L2 1829 3313 0 799 243 11 11 chrX 114581206 114581383 -62392757 + MIR SINE MIR 86 262 0 * 2163 99 0 43 chrX 114581405 114581709 -62392431 + AluSg1 SINE Alu 1 291 -18 1367 263 66 5 chrX 114582908 114583318 -62390822 + LTR16A LTR ERVL 9 443 -7 2077 165 96 15 chrX 114583341 114583735 -62390405 + MSTB LTR MaLR 1 426 0 1243 282 105 43 chrX 114583781 114584430 -62389710 - L2 LINE L2 0 3313 2597 3386 102 14 8 chrX 114584430 114584919 -62389221 - LTR22B LTR ERVK 0 492 1 1243 282 105 43 chrX 114584919 114585082 -62389058 - L2 LINE L2 -716 2597 2446 270 269 0 0 chrX 114585128 114585180 -62388960 - L2 LINE L2 -16 3256 3205 2670 116 3 0 chrX 114585586 114585965 -62388175 + L1PA11 LINE L1 5795 6174 0 747 261 16 1 chrX 114586045 114586239 -62387901 + MLT1J LTR MaLR 1 157 -289 363 244 0 0 chrX 114586265 114586355 -62387785 + L1ME1 LINE L1 6072 6161 -5 21 0 0 0 chrX 114586362 114586383 -62387757 + AT_rich Low_complexity Low_complexity 1 21 0 611 275 70 13 chrX 114586383 114586612 -62387528 + MLT1J LTR MaLR 270 511 0 262 240 0 0 chrX 114586898 114586948 -62387192 + L1M4b LINE L1 18 67 -6792 7757 184 16 17 chrX 114586977 114588500 -62385640 + L1PBa LINE L1 85 1607 -5256 2090 118 0 30 chrX 114588500 114588804 -62385336 + AluSg SINE Alu 1 295 -15 7757 184 16 17 chrX 114588804 114588842 -62385298 + L1PBa LINE L1 1607 1644 -5219 5116 165 33 6 chrX 114588809 114590478 -62383662 + L1PB2 LINE L1 8 1723 -4481 * 5271 159 15 14 chrX 114590475 114591673 -62382467 + L1PB2 LINE L1 4626 5828 -380 1977 78 0 22 chrX 114591673 114591942 -62382198 + AluY SINE Alu 48 310 -1 5271 159 15 14 chrX 114591942 114592322 -62381818 + L1PB2 LINE L1 5828 6206 -2 745 232 45 11 chrX 114592344 114592521 -62381619 - MLT1D LTR MaLR -68 437 255 1957 99 18 21 chrX 114592602 114592886 -62381254 + AluSq SINE Alu 12 294 -19 1931 236 27 7 chrX 114592982 114593567 -62380573 + L1MB7 LINE L1 4735 5331 -815 2775 19 0 0 chrX 114593568 114593876 -62380264 + AluYa5 SINE Alu 1 308 -3 1351 112 0 0 chrX 114593883 114594071 -62380069 + AluY SINE Alu 119 306 -5 402 113 0 0 chrX 114594191 114594253 -62379887 + Alu SINE Alu 244 305 -7 2801 209 39 16 chrX 114594253 114594979 -62379161 + L1MB7 LINE L1 5323 6064 -120 948 186 83 19 chrX 114594984 114595292 -62378848 + MSTD LTR MaLR 19 396 0 390 111 0 0 chrX 114595292 114595355 -62378785 + L1MB8 LINE L1 6065 6127 -51 23 0 0 0 chrX 114595516 114595539 -62378601 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chrX 114595587 114595617 -62378523 + AT_rich Low_complexity Low_complexity 1 30 0 320 148 0 49 chrX 114595635 114595696 -62378444 + L1MC4 LINE L1 6647 6704 -1338 575 115 68 0 chrX 114595700 114595848 -62378292 + (TA)n Simple_repeat Simple_repeat 1 158 0 653 198 76 0 chrX 114595914 114596090 -62378050 + L1MB4 LINE L1 1212 1776 -4537 * 2602 243 18 31 chrX 114596082 114596970 -62377170 + L1MB4 LINE L1 4222 5097 -1285 626 241 73 0 chrX 114596974 114597111 -62377029 - AluJb SINE Alu -30 282 136 3761 204 56 4 chrX 114597111 114598378 -62375762 + L1MB4 LINE L1 5084 6416 0 278 343 57 0 chrX 114598385 114598455 -62375685 + MIR SINE MIR 48 121 -141 335 354 25 6 chrX 114598467 114598628 -62375512 + MIR SINE MIR 96 259 -3 1051 215 23 14 chrX 114598732 114598951 -62375189 - MER58A DNA MER1_type 0 224 4 238 163 0 61 chrX 114599798 114599847 -62374293 + tRNA-Asp-GAC tRNA tRNA 2 47 -28 2139 115 3 19 chrX 114600065 114600379 -62373761 + AluSx SINE Alu 1 309 -3 382 313 8 8 chrX 114601057 114601191 -62372949 + MIR SINE MIR 49 182 -80 22 56 0 0 chrX 114602921 114602957 -62371183 + AT_rich Low_complexity Low_complexity 1 36 0 477 114 0 0 chrX 114603099 114603178 -62370962 + L1MA4 LINE L1 6216 6294 -6 567 260 16 91 chrX 114603201 114603443 -62370697 - L3 LINE CR1 -194 1383 1160 3576 123 17 10 chrX 114603564 114604142 -62369998 + L1PA16 LINE L1 5583 6164 -2 754 239 59 68 chrX 114604468 114604610 -62369530 + MIR SINE MIR 43 184 -78 2471 87 3 0 chrX 114604610 114604921 -62369219 + AluSp SINE Alu 1 312 -1 754 239 59 68 chrX 114604921 114605000 -62369140 + MIR SINE MIR 184 262 0 22 0 0 0 chrX 114605279 114605301 -62368839 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chrX 114605315 114605357 -62368783 + (CA)n Simple_repeat Simple_repeat 2 43 0 678 284 37 41 chrX 114605455 114605673 -62368467 - MIR SINE MIR -1 261 45 383 278 0 61 chrX 114605806 114605921 -62368219 + MIR SINE MIR 24 131 -131 191 319 126 0 chrX 114606060 114606179 -62367961 - MIR SINE MIR -101 161 28 220 290 48 0 chrX 114607830 114607892 -62366248 - MER5A DNA MER1_type -1 188 124 185 302 0 0 chrX 114609558 114609601 -62364539 - L2 LINE L2 -80 3192 3150 323 361 139 4 chrX 114610050 114610316 -62363824 - L2 LINE L2 -100 3172 2871 342 381 62 16 chrX 114610358 114610602 -62363538 - L2 LINE L2 -449 2865 2611 255 244 13 26 chrX 114610603 114610681 -62363459 + CT-rich Low_complexity Low_complexity 2 78 0 190 333 0 0 chrX 114611692 114611743 -62362397 - L2 LINE L2 -9 3263 3213 3316 104 67 35 chrX 114611887 114612012 -62362128 - MER41C LTR ERV1 0 554 434 2405 56 26 0 chrX 114612012 114612315 -62361825 + AluY SINE Alu 1 311 0 3316 104 67 35 chrX 114612315 114612726 -62361414 - MER41C LTR ERV1 -120 434 1 8304 93 14 17 chrX 114612732 114613982 -62360158 - MER41C-int LTR ERV1 -6 7750 6505 1447 76 5 0 chrX 114613976 114614174 -62359966 - MER41C-int LTR ERV1 -1392 6364 6166 * 10052 67 20 4 chrX 114614172 114615542 -62358598 - MER41C-int LTR ERV1 -5002 2754 1363 6408 65 46 3 chrX 114615534 114616424 -62357716 - MER41C-int LTR ERV1 -6826 930 3 * 3293 121 69 2 chrX 114616510 114617029 -62357111 - MER41C LTR ERV1 0 554 1 709 254 115 18 chrX 114617122 114617339 -62356801 - MIR SINE MIR -12 250 13 404 240 226 7 chrX 114618199 114618345 -62355795 + MIR SINE MIR 78 255 -7 2081 130 0 34 chrX 114618786 114619108 -62355032 + AluSx SINE Alu 1 311 -1 1208 176 32 129 chrX 114619821 114620225 -62353915 - MLT1A1 LTR MaLR 0 365 1 230 250 0 0 chrX 114620292 114620336 -62353804 + polypyrimidine Low_complexity Low_complexity 2 45 0 463 255 152 30 chrX 114622036 114622267 -62351873 - MIR SINE MIR -2 260 2 1230 117 146 12 chrX 114622813 114623060 -62351080 + L1MA8 LINE L1 6009 6288 -3 272 196 18 0 chrX 114623257 114623313 -62350827 + MER20 DNA MER1_type 163 219 0 713 286 5 32 chrX 114624430 114624650 -62349490 + MIR SINE MIR 18 231 -31 267 192 14 41 chrX 114624984 114625057 -62349083 + GA-rich Low_complexity Low_complexity 2 72 0 2605 83 50 3 chrX 114625486 114625846 -62348294 + MER51B LTR ERV1 1 377 0 1759 86 4 0 chrX 114625846 114626089 -62348051 + MER51B-int LTR ERV1 1 244 -7572 872 153 0 0 chrX 114626091 114626248 -62347892 - AluSg/x SINE Alu 0 310 170 9317 127 88 65 chrX 114626283 114628087 -62346053 + MER51B-int LTR ERV1 379 2139 -5677 2031 115 0 48 chrX 114628087 114628399 -62345741 + AluSx SINE Alu 1 297 -15 9317 127 88 65 chrX 114628399 114628700 -62345440 + MER51B-int LTR ERV1 2139 2431 -5385 2135 128 8 38 chrX 114628700 114629025 -62345115 + THE1A LTR MaLR 1 315 -40 2224 115 0 0 chrX 114629025 114629321 -62344819 - AluSx SINE Alu -16 296 1 2135 128 8 38 chrX 114629321 114629361 -62344779 + THE1A LTR MaLR 315 355 0 11670 93 8 2 chrX 114629361 114630932 -62343208 + THE1A-int LTR MaLR 1 1580 0 2312 114 11 9 chrX 114630934 114631284 -62342856 + THE1A LTR MaLR 5 355 0 9317 127 88 65 chrX 114631284 114631742 -62342398 + MER51B-int LTR ERV1 2431 3103 -4713 2296 82 3 0 chrX 114631742 114632034 -62342106 - AluY SINE Alu -16 295 3 9317 127 88 65 chrX 114632034 114632253 -62341887 + MER51B-int LTR ERV1 3103 3315 -4501 2142 135 178 7 chrX 114632247 114632707 -62341433 + MER51B-int LTR ERV1 2829 3367 -2579 * 1794 92 42 4 chrX 114632686 114633063 -62341077 + MER51B-int LTR ERV1 2210 2645 -2572 * 7791 141 42 27 chrX 114633062 114635093 -62339047 + MER51B-int LTR ERV1 5758 7816 0 2681 73 53 0 chrX 114635095 114635453 -62338687 + MER51B LTR ERV1 1 377 0 22 0 0 0 chrX 114635680 114635702 -62338438 + AT_rich Low_complexity Low_complexity 1 22 0 4232 104 3 0 chrX 114635936 114636530 -62337610 + L1PA10 LINE L1 5565 6160 -8 516 312 87 9 chrX 114636898 114637116 -62337024 + MIR SINE MIR 28 262 0 315 0 0 0 chrX 114637139 114637174 -62336966 + (GA)n Simple_repeat Simple_repeat 2 36 0 420 298 70 0 chrX 114637204 114637318 -62336822 - L2 LINE L2 0 3313 3192 2379 59 3 30 chrX 114637590 114637894 -62336246 - AluY SINE Alu -15 296 1 448 257 44 37 chrX 114638063 114638199 -62335941 - L2 LINE L2 -2 3270 3134 448 300 91 86 chrX 114638690 114639040 -62335100 - L2 LINE L2 0 3272 2921 333 291 12 0 chrX 114639362 114639448 -62334692 + MIR SINE MIR 61 147 -115 305 333 142 28 chrX 114639524 114639665 -62334475 - L2 LINE L2 0 3272 3116 231 265 67 53 chrX 114639807 114639988 -62334152 + L1M4 LINE L1 3713 3901 -2245 1707 180 18 80 chrX 114639988 114640377 -62333763 + MLT1A1 LTR MaLR 1 365 0 231 265 67 53 chrX 114640377 114640478 -62333662 + L1M4 LINE L1 3901 3999 -2147 437 355 60 33 chrX 114640719 114641051 -62333089 - L2 LINE L2 -497 2817 2477 516 325 7 7 chrX 114641090 114641241 -62332899 - L2 LINE L2 -544 2770 2620 2267 99 0 37 chrX 114641319 114641641 -62332499 + AluSg SINE Alu 1 310 0 394 304 76 19 chrX 114641643 114641801 -62332339 - L2 LINE L2 -917 2397 2231 22 0 0 0 chrX 114641908 114641930 -62332210 + AT_rich Low_complexity Low_complexity 1 22 0 2136 122 0 0 chrX 114642047 114642341 -62331799 + AluSx SINE Alu 1 294 -18 532 303 87 35 chrX 114642833 114643120 -62331020 + L1M4 LINE L1 4733 5034 -1112 2450 96 0 0 chrX 114643121 114643424 -62330716 - AluSx SINE Alu -8 304 2 2534 225 81 6 chrX 114643448 114644099 -62330041 + L1MC/D LINE L1 19 942 -5598 2394 164 46 5 chrX 114644181 114644613 -62329527 - MSTB2 LTR MaLR -7 450 1 471 227 84 0 chrX 114644614 114644733 -62329407 - MLT1A2 LTR MaLR -245 129 1 1014 253 35 14 chrX 114644733 114645081 -62329059 + L1MC/D LINE L1 4973 5327 -1213 * 1381 162 41 99 chrX 114645079 114645154 -62328986 + L1MC/D LINE L1 5633 5711 -1189 1797 105 78 4 chrX 114645154 114645412 -62328728 + AluSx SINE Alu 1 277 -35 195 42 0 0 chrX 114645414 114645438 -62328702 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 1381 162 41 99 chrX 114645438 114645831 -62328309 + L1MC/D LINE L1 5712 5990 -910 2377 71 0 3 chrX 114645831 114646128 -62328012 + AluY SINE Alu 1 296 -15 1381 162 41 99 chrX 114646128 114646343 -62327797 + L1MC/D LINE L1 5990 6216 -684 591 281 123 20 chrX 114646653 114646856 -62327284 + MIR SINE MIR 28 251 -11 21 36 0 0 chrX 114646856 114646884 -62327256 + AT_rich Low_complexity Low_complexity 1 28 0 688 216 69 15 chrX 114647129 114647333 -62326807 - L1MB7 LINE L1 0 6184 5970 522 307 127 18 chrX 114647334 114647617 -62326523 - L2 LINE L2 -787 2527 2214 1976 129 35 0 chrX 114647668 114647954 -62326186 - AluSq SINE Alu -17 296 1 234 184 0 0 chrX 114647988 114648037 -62326103 + HSMAR2 DNA Mariner 117 165 -1137 305 267 163 47 chrX 114648601 114648773 -62325367 + MIR SINE MIR 22 213 -49 2290 114 7 0 chrX 114649982 114650288 -62323852 - AluSq SINE Alu -5 308 1 302 314 48 100 chrX 114650366 114650576 -62323564 + MIR SINE MIR 2 200 -62 1318 219 28 77 chrX 114651120 114651550 -62322590 + MLT1I LTR MaLR 1 409 0 602 302 73 22 chrX 114651551 114651615 -62322525 + MIR SINE MIR 15 74 -188 2512 59 0 3 chrX 114651615 114651920 -62322220 - AluY SINE Alu -7 304 1 602 302 73 22 chrX 114651920 114652031 -62322109 + MIR SINE MIR 74 207 -55 14746 121 47 5 chrX 114652031 114654350 -62319790 + Tigger1 DNA MER2_type 1 2417 -1 602 302 73 22 chrX 114654350 114654405 -62319735 + MIR SINE MIR 207 258 -4 219 347 0 13 chrX 114654659 114654734 -62319406 + MER5A DNA MER1_type 21 94 -95 1021 228 38 49 chrX 114654779 114655076 -62319064 + L1ME1 LINE L1 4455 4747 -1399 2231 98 16 0 chrX 114655076 114655382 -62318758 + AluY SINE Alu 1 311 0 1021 228 38 49 chrX 114655382 114655554 -62318586 + L1ME1 LINE L1 4747 4919 -1227 3114 127 2 27 chrX 114655555 114656066 -62318074 + L1MB2 LINE L1 5666 6163 -8 606 227 9 40 chrX 114656110 114656335 -62317805 + L1MB8 LINE L1 5959 6176 -2 2831 248 46 21 chrX 114656394 114656538 -62317602 + L1ME1 LINE L1 5089 5228 -938 2200 96 0 23 chrX 114656538 114656841 -62317299 + AluY SINE Alu 1 296 -15 2831 248 46 21 chrX 114656841 114657698 -62316442 + L1ME1 LINE L1 5228 6116 -50 722 87 0 55 chrX 114657733 114657860 -62316280 - L1PB1 LINE L1 -1 6150 6031 6723 104 29 11 chrX 114657860 114658909 -62315231 - L1PBa LINE L1 -5793 1070 4 22 35 0 0 chrX 114658922 114658951 -62315189 + AT_rich Low_complexity Low_complexity 1 29 0 4945 126 7 60 chrX 114658963 114659918 -62314222 + L1PA16 LINE L1 5260 6164 -2 289 62 21 0 chrX 114659949 114659997 -62314143 + L1MB2 LINE L1 6120 6168 -3 492 264 178 6 chrX 114660010 114660184 -62313956 + MIR SINE MIR 56 259 -3 278 286 16 0 chrX 114661563 114661626 -62312514 + L2 LINE L2 2992 3055 -217 331 262 87 82 chrX 114662593 114662799 -62311341 + MIR SINE MIR 56 262 0 201 203 16 78 chrX 114663046 114663110 -62311030 - L2 LINE L2 -8 3305 3246 637 326 99 63 chrX 114663147 114663992 -62310148 + L2 LINE L2 2406 3272 0 584 198 0 0 chrX 114666067 114666173 -62307967 + MER3 DNA MER1_type 2 107 -102 315 270 74 81 chrX 114666185 114666333 -62307807 - MIR3 SINE MIR -11 197 51 564 224 17 0 chrX 114666429 114666545 -62307595 + MIR SINE MIR 97 214 -48 2015 148 135 5 chrX 114666850 114667229 -62306911 + MSTA LTR MaLR 1 428 0 8733 175 33 4 chrX 114667230 114668833 -62305307 + MSTA-int LTR MaLR 2 1651 0 2257 152 45 26 chrX 114668833 114669253 -62304887 + MSTA LTR MaLR 1 428 0 2160 95 3 10 chrX 114669518 114669653 -62304487 + AluSp SINE Alu 1 135 -178 2508 69 0 0 chrX 114669653 114670106 -62304034 + AluY SINE Alu 1 484 0 214 65 0 0 chrX 114670106 114670137 -62304003 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2304 107 3 0 chrX 114670817 114671127 -62303013 + AluSp SINE Alu 1 311 -2 332 280 184 8 chrX 114671188 114671313 -62302827 - MER5A DNA MER1_type 0 189 43 866 207 67 74 chrX 114671327 114671801 -62302339 - MLT1B LTR MaLR 0 390 3 353 224 252 0 chrX 114672031 114672138 -62302002 + MER94 DNA DNA 1 134 0 442 244 15 38 chrX 114672462 114672593 -62301547 - MIR SINE MIR -130 132 5 2053 91 18 0 chrX 114672607 114672882 -62301258 - AluSg SINE Alu -30 280 1 1768 179 67 71 chrX 114672978 114673485 -62300655 + MLT1D LTR MaLR 1 505 0 2472 68 0 0 chrX 114673490 114673799 -62300341 + AluY SINE Alu 1 309 -2 40 37 0 0 chrX 114673943 114673997 -62300143 + AT_rich Low_complexity Low_complexity 1 54 0 317 148 0 0 chrX 114675292 114675346 -62298794 + L1MC1 LINE L1 6274 6327 -6 387 282 0 46 chrX 114675545 114675676 -62298464 - MER5A DNA MER1_type -1 188 64 2255 94 3 10 chrX 114675699 114676007 -62298133 + AluSg SINE Alu 1 306 -4 318 358 73 8 chrX 114676291 114676414 -62297726 - L2 LINE L2 -8 3264 3134 2046 125 0 20 chrX 114677206 114677509 -62296631 + AluSx SINE Alu 1 297 -15 38 0 0 0 chrX 114677509 114677547 -62296593 + AT_rich Low_complexity Low_complexity 1 38 0 882 281 96 8 chrX 114677724 114678080 -62296060 + L1MEc LINE L1 37 423 -5973 978 240 26 39 chrX 114678138 114678446 -62295694 - LTR40a LTR ERVL 0 519 216 341 239 128 0 chrX 114678662 114678771 -62295369 + MIR SINE MIR 122 244 -18 348 295 65 43 chrX 114678848 114678987 -62295153 + MIR SINE MIR 16 157 -105 2241 91 31 0 chrX 114679463 114679749 -62294391 + AluSg SINE Alu 1 295 -15 183 42 0 0 chrX 114679789 114679813 -62294327 + (TC)n Simple_repeat Simple_repeat 1 24 0 1265 314 35 20 chrX 114680556 114681169 -62292971 + L1M2c LINE L1 2 1014 -6154 242 344 0 0 chrX 114681503 114681593 -62292547 + L1M4 LINE L1 178 267 -6275 2511 219 54 42 chrX 114681646 114682289 -62291851 + L1M4 LINE L1 350 1007 -5535 1455 171 164 93 chrX 114682289 114682838 -62291302 - LTR4 LTR ERV1 0 588 1 2511 219 54 42 chrX 114682838 114683021 -62291119 + L1M4 LINE L1 1007 1186 -5356 378 304 11 33 chrX 114683027 114683208 -62290932 + L1M2c LINE L1 1200 1376 -5712 2011 96 55 86 chrX 114683252 114683385 -62290755 + MER51B LTR ERV1 1 137 -240 3657 125 23 5 chrX 114683385 114683955 -62290185 - LTR22 LTR ERVK 0 580 1 2011 96 55 86 chrX 114683955 114684205 -62289935 + MER51B LTR ERV1 137 372 -5 4270 135 21 4 chrX 114684207 114685596 -62288544 + MER51B-int LTR ERV1 1 1495 -6321 249 167 0 0 chrX 114685612 114685660 -62288480 + MER4A LTR ERV1 51 98 -566 673 152 49 67 chrX 114685665 114685869 -62288271 + MER4A LTR ERV1 276 534 -130 5651 102 45 2 chrX 114685872 114687246 -62286894 + MER51B-int LTR ERV1 1805 3265 -4551 1953 191 50 27 chrX 114687258 114687739 -62286401 + MER51B-int LTR ERV1 1476 1967 -3250 * 1960 80 69 13 chrX 114687730 114688096 -62286044 + MER51B-int LTR ERV1 2341 5375 -2043 526 178 0 0 chrX 114688095 114688196 -62285944 + MER51B-int LTR ERV1 5249 5349 -2188 * 9214 120 55 23 chrX 114688186 114688321 -62285819 + MER51B-int LTR ERV1 5620 5749 -2067 2562 45 0 3 chrX 114688321 114688633 -62285507 - AluY SINE Alu 0 311 1 2243 99 0 7 chrX 114688633 114688935 -62285205 - AluSx SINE Alu -12 300 1 9214 120 55 23 chrX 114688935 114690335 -62283805 + MER51B-int LTR ERV1 5749 7425 -391 189 0 0 0 chrX 114690335 114690356 -62283784 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 9214 120 55 23 chrX 114690356 114690760 -62283380 + MER51B-int LTR ERV1 7425 7815 -1 2532 100 50 0 chrX 114690762 114691121 -62283019 + MER51B LTR ERV1 1 377 0 1542 284 12 24 chrX 114691134 114691624 -62282516 + L1M3 LINE L1 577 1092 -5561 2443 112 11 6 chrX 114691624 114691990 -62282150 - THE1C LTR MaLR 0 375 8 672 198 0 0 chrX 114691991 114692107 -62282033 + L1M3 LINE L1 1035 1150 -5503 1751 212 14 9 chrX 114692112 114692457 -62281683 + L1M3 LINE L1 1255 1601 -5052 * 5391 212 61 8 chrX 114692436 114694033 -62280107 + L1M3 LINE L1 3477 5158 -1574 * 12588 165 12 12 chrX 114694027 114695493 -62278647 + L1MB3 LINE L1 2695 4164 -2059 5197 30 7 0 chrX 114695493 114696104 -62278036 + L1PA3 LINE L1 5540 6154 -1 12588 165 12 12 chrX 114696104 114697422 -62276718 + L1MB3 LINE L1 4164 5480 -743 1260 86 5 0 chrX 114697487 114697674 -62276466 + L1MB3 LINE L1 5782 5969 -214 1177 81 46 0 chrX 114697696 114697869 -62276271 + L1MA1 LINE L1 6122 6302 0 2156 219 101 8 chrX 114697881 114699000 -62275140 + L1M3 LINE L1 5136 6363 -403 2494 73 0 0 chrX 114699036 114699337 -62274803 - AluY SINE Alu -10 301 1 2441 200 33 10 chrX 114699337 114699847 -62274293 + MER82 DNA MER2_type 15 536 -117 834 171 34 0 chrX 114699924 114700070 -62274070 - MER2 DNA MER2_type -194 151 1 749 302 98 3 chrX 114700070 114700427 -62273713 - MLT1H1 LTR MaLR -164 391 1 23 0 0 0 chrX 114701844 114701867 -62272273 + AT_rich Low_complexity Low_complexity 1 23 0 233 300 0 23 chrX 114701874 114702004 -62272136 + L1ME LINE L1 5312 5438 -683 289 231 0 0 chrX 114702027 114702092 -62272048 + L1ME LINE L1 5594 5658 -512 634 170 0 0 chrX 114702120 114702226 -62271914 - THE1B LTR MaLR 0 364 259 1393 141 44 37 chrX 114702409 114702679 -62271461 - THE1B LTR MaLR -92 272 1 3987 164 38 8 chrX 114702800 114703568 -62270572 + L1PB4 LINE L1 3 793 -6070 285 279 19 0 chrX 114703561 114703665 -62270475 - L1P LINE L1 -973 5173 5068 * 228 152 0 0 chrX 114703668 114703714 -62270426 - LTR66 LTR ERVL -167 443 398 453 116 0 0 chrX 114703714 114703783 -62270357 + (TA)n Simple_repeat Simple_repeat 1 69 0 682 137 0 68 chrX 114703790 114703868 -62270272 - L1 LINE L1 -1279 4867 4802 2322 65 38 3 chrX 114703868 114704159 -62269981 - AluY SINE Alu -10 301 1 682 137 0 68 chrX 114704159 114704226 -62269914 - L1 LINE L1 -1344 4802 4732 383 171 0 0 chrX 114704228 114704304 -62269836 + L1P LINE L1 4481 4556 -1590 4271 84 15 5 chrX 114704304 114704898 -62269242 + L1PB1 LINE L1 5541 6151 0 1837 234 16 37 chrX 114704902 114704962 -62269178 + L1P LINE L1 3031 3091 -3055 2491 79 0 0 chrX 114704962 114705266 -62268874 + AluSx SINE Alu 1 304 -8 1837 234 16 37 chrX 114705266 114705851 -62268289 + L1P LINE L1 3091 3662 -2484 331 148 16 0 chrX 114705855 114705916 -62268224 + MER51-int LTR ERV1 6313 6374 -1442 954 165 33 5 chrX 114705916 114706128 -62268012 + L1 LINE L1 4128 4345 -1801 12629 197 31 8 chrX 114706137 114710349 -62263791 + L1PB4 LINE L1 2371 6673 -197 1456 161 39 0 chrX 114711020 114711280 -62262860 - MSTA LTR MaLR 0 428 159 388 171 73 0 chrX 114711939 114712021 -62262119 + L1PB4 LINE L1 6766 6853 -19 195 114 0 0 chrX 114712025 114712060 -62262080 + (TA)n Simple_repeat Simple_repeat 1 35 0 1212 254 122 19 chrX 114712230 114712655 -62261485 - LTR33 LTR ERVL 0 521 53 871 293 50 33 chrX 114714238 114714719 -62259421 - MLT1K LTR MaLR -12 576 16 623 302 116 25 chrX 114714769 114715130 -62259010 - L3 LINE CR1 -31 1546 1153 520 267 46 67 chrX 114715148 114715343 -62258797 - MIR SINE MIR -51 211 21 290 333 0 11 chrX 114715357 114715447 -62258693 - L3 LINE CR1 -429 1148 1060 1517 100 0 65 chrX 114716069 114716298 -62257842 - AluSg1 SINE Alu -95 214 1 23 0 0 0 chrX 114716405 114716428 -62257712 + AT_rich Low_complexity Low_complexity 1 23 0 2392 69 3 0 chrX 114716489 114716779 -62257361 + AluSg SINE Alu 1 291 -19 207 0 0 0 chrX 114716782 114716805 -62257335 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 223 261 0 15 chrX 114716940 114717005 -62257135 + GA-rich Low_complexity Low_complexity 2 65 0 382 336 40 0 chrX 114717405 114717554 -62256586 + MIR3 SINE MIR 49 203 -5 21 57 0 0 chrX 114720706 114720741 -62253399 + GC_rich Low_complexity Low_complexity 1 35 0 506 280 0 0 chrX 114721315 114721422 -62252718 - MER5A DNA MER1_type 0 189 83 2289 239 35 30 chrX 114721554 114722308 -62251832 + L1 LINE L1 4076 4832 -1314 2912 130 13 6 chrX 114722331 114722808 -62251332 - L1PA13 LINE L1 -6 6157 5678 3076 94 2 5 chrX 114722813 114723248 -62250892 - L1PB1 LINE L1 0 6151 5718 2005 221 19 3 chrX 114723276 114723851 -62250289 + L1 LINE L1 2951 3534 -2612 * 6692 198 22 2 chrX 114723838 114725215 -62248925 + L1M2 LINE L1 880 2283 -4566 7931 76 7 8 chrX 114726064 114728032 -62246108 - L1PA8 LINE L1 -25 6147 4187 1949 150 21 63 chrX 114728827 114729206 -62244934 + MLT1A1 LTR MaLR 1 363 -2 1876 109 31 177 chrX 114730127 114730511 -62243629 - Tigger2 DNA MER2_type -106 2612 1 1593 168 21 47 chrX 114732072 114732412 -62241728 + MER44D DNA MER2_type 9 609 0 1224 151 5 0 chrX 114732915 114733100 -62241040 - MER5A DNA MER1_type 0 189 4 437 286 109 23 chrX 114733188 114733454 -62240686 - MLT1L LTR MaLR 0 615 327 481 246 16 33 chrX 114734089 114734211 -62239929 - L3 LINE CR1 -176 1401 1282 1713 194 38 53 chrX 114734338 114734812 -62239328 - MLT1C LTR MaLR 0 467 1 359 267 35 0 chrX 114735010 114735096 -62239044 - MIR SINE MIR -18 244 156 2025 236 71 45 chrX 114735133 114735727 -62238413 + MLT1E2 LTR MaLR 18 626 0 359 264 35 103 chrX 114735727 114735901 -62238239 - MIR SINE MIR -100 162 1 437 257 90 26 chrX 114736254 114736514 -62237626 + L1ME3A LINE L1 4732 5008 -1138 6288 119 12 10 chrX 114736520 114737529 -62236611 + HUERS-P1 LTR ERV1 5252 6262 -1 3728 114 19 14 chrX 114737530 114738119 -62236021 + LTR8 LTR ERV1 1 592 -99 746 260 77 55 chrX 114738160 114739011 -62235129 + L1ME3A LINE L1 5050 5933 -245 217 279 0 0 chrX 114741159 114741202 -62232938 - L3 LINE CR1 -80 1497 1455 2371 74 3 3 chrX 114741711 114742022 -62232118 + AluY SINE Alu 1 311 0 2142 110 0 23 chrX 114743790 114744121 -62230019 + AluSx SINE Alu 1 312 0 768 217 120 64 chrX 114744386 114744745 -62229395 + MER67C LTR ERV1 1 379 -331 534 235 69 20 chrX 114744751 114744955 -62229185 + MER67C LTR ERV1 497 710 0 1706 189 30 3 chrX 114745337 114745671 -62228469 - MER2 DNA MER2_type -1 343 1 688 191 96 7 chrX 114746960 114747096 -62227044 + FRAM SINE Alu 1 146 -30 2245 116 0 3 chrX 114749055 114749365 -62224775 - AluSg SINE Alu -1 309 1 375 186 24 45 chrX 114749730 114749892 -62224248 + MER67C LTR ERV1 1 208 -502 7072 18 0 0 chrX 114749895 114750745 -62223395 - L1PA3 LINE L1 0 6155 5306 286 174 58 58 chrX 114750814 114750900 -62223240 + MER67C LTR ERV1 304 389 -321 592 172 65 24 chrX 114750932 114751101 -62223039 + MER67C LTR ERV1 535 710 0 2548 227 55 30 chrX 114751456 114752444 -62221696 - L1ME2 LINE L1 -9 6155 5148 2294 77 0 10 chrX 114752474 114752772 -62221368 + AluY SINE Alu 1 295 -16 669 238 29 9 chrX 114752772 114753016 -62221124 - L1ME2 LINE L1 -1087 5059 4817 13047 133 23 3 chrX 114753016 114755137 -62219003 + L1MA3 LINE L1 531 2694 -4871 1316 109 48 29 chrX 114755138 114755348 -62218792 + AluSp SINE Alu 1 214 -99 3592 114 10 46 chrX 114755353 114756415 -62217725 + L1MA3 LINE L1 6164 7261 -463 1033 166 16 0 chrX 114756421 114756608 -62217532 - MER61E LTR ERV1 -38 531 342 602 219 8 0 chrX 114756704 114756832 -62217308 - LTR25 LTR ERV1 -436 358 230 313 171 0 154 chrX 114756802 114756894 -62217246 - MER61E LTR ERV1 -465 104 34 * 180 0 0 0 chrX 114756894 114756914 -62217226 + (TTG)n Simple_repeat Simple_repeat 2 21 0 313 171 0 154 chrX 114756914 114756944 -62217196 - MER61E LTR ERV1 -535 34 1 2838 124 15 9 chrX 114756944 114757405 -62216735 + L1MA3 LINE L1 5840 6303 -2 626 247 6 58 chrX 114758577 114758751 -62215389 - MER5A DNA MER1_type -18 171 7 266 283 166 10 chrX 114759406 114759564 -62214576 + MIR SINE MIR 51 238 -24 25 0 0 0 chrX 114760745 114760770 -62213370 + AT_rich Low_complexity Low_complexity 1 25 0 363 290 80 7 chrX 114761462 114761600 -62212540 + L2 LINE L2 2150 2297 -1017 972 180 29 105 chrX 114761601 114761880 -62212260 + L1M4c LINE L1 2169 2417 -3965 1928 161 40 11 chrX 114761880 114762260 -62211880 + L1MA4 LINE L1 5910 6300 0 972 180 29 105 chrX 114762260 114762358 -62211782 + L1M4c LINE L1 2417 2521 -3861 1173 57 0 0 chrX 114762359 114762499 -62211641 + AluY SINE Alu 166 305 -6 1759 239 32 25 chrX 114762505 114763100 -62211040 + L1M4c LINE L1 2524 3122 -3260 2229 170 44 26 chrX 114763100 114763553 -62210587 + MER65C LTR ERV1 1 461 0 821 236 137 29 chrX 114764371 114764684 -62209456 + MER34 LTR ERV1 34 380 -162 2116 196 65 99 chrX 114764684 114765627 -62208513 + MER65-int LTR ERV1 1570 2480 -2391 2125 149 54 11 chrX 114816120 114816470 -62157670 - MLT1A1 LTR MaLR 0 365 1 425 250 16 47 chrX 114816819 114816947 -62157193 - L2 LINE L2 0 3313 3190 505 124 0 115 chrX 114817412 114817525 -62156615 - LTR33 LTR ERVL 0 521 422 410 271 19 0 chrX 114817583 114817690 -62156450 - LTR33 LTR ERVL -412 109 1 636 333 5 10 chrX 114818381 114818582 -62155558 + MIR SINE MIR 61 260 -2 1606 239 33 30 chrX 114819182 114819872 -62154268 + L2 LINE L2 2625 3313 0 501 257 132 26 chrX 114819959 114820111 -62154029 + MER5B DNA MER1_type 2 169 -9 683 233 25 2 chrX 114820898 114821061 -62153079 - MIR SINE MIR -59 203 41 311 256 13 13 chrX 114821070 114821148 -62152992 - MER5A DNA MER1_type -1 188 111 228 201 38 208 chrX 114821071 114821230 -62152910 + MER5A DNA MER1_type 17 148 -41 * 725 259 66 26 chrX 114822298 114822526 -62151614 - MIR SINE MIR -3 259 23 521 286 158 5 chrX 114822818 114823014 -62151126 + MIR SINE MIR 22 247 -15 727 232 52 92 chrX 114823372 114823678 -62150462 - L2 LINE L2 -1 3312 3019 198 265 132 0 chrX 114823681 114823749 -62150391 - MIR SINE MIR -67 195 119 2068 213 17 38 chrX 114823768 114824243 -62149897 + LTR40c LTR ERVL 1 465 0 404 324 44 11 chrX 114824254 114824436 -62149704 - L2 LINE L2 -22 3291 3104 389 140 0 11 chrX 114824438 114824505 -62149635 + MIR SINE MIR 117 181 -81 23 33 0 0 chrX 114825492 114825522 -62148618 + AT_rich Low_complexity Low_complexity 1 30 0 5890 144 11 21 chrX 114825522 114826327 -62147813 - L1PB3 LINE L1 -2 6152 5369 2042 126 34 0 chrX 114826327 114826620 -62147520 - AluSx SINE Alu -9 303 1 5890 144 11 21 chrX 114826620 114827142 -62146998 - L1PB3 LINE L1 -785 5369 4843 1426 186 69 31 chrX 114828221 114828505 -62145635 - MLT1A1 LTR MaLR 0 365 66 1081 258 83 52 chrX 114828505 114828889 -62145251 + MSTD LTR MaLR 1 396 0 1426 186 69 31 chrX 114828889 114828922 -62145218 - MLT1A1 LTR MaLR -299 66 36 2051 147 108 66 chrX 114828940 114829349 -62144791 - MSTA LTR MaLR 0 428 3 233 318 0 0 chrX 114829430 114829493 -62144647 - MER113 DNA MER1_type? 0 521 459 600 215 80 50 chrX 114829527 114829636 -62144504 - MER113 DNA MER1_type? -310 211 92 3856 88 11 11 chrX 114829636 114830169 -62143971 + L1MA1 LINE L1 5770 6302 0 600 215 80 50 chrX 114830169 114830259 -62143881 - MER113 DNA MER1_type? -429 92 6 374 276 0 11 chrX 114830267 114830354 -62143786 + MIR SINE MIR 12 97 -165 473 208 10 0 chrX 114831886 114831987 -62142153 - MER53 DNA DNA -84 105 4 529 341 91 50 chrX 114833035 114833204 -62140936 - L2 LINE L2 0 3272 3111 2207 121 0 0 chrX 114833204 114833502 -62140638 + AluSx SINE Alu 1 298 -14 529 341 91 50 chrX 114833502 114833672 -62140468 - L2 LINE L2 -161 3111 2919 439 304 216 0 chrX 114833728 114833932 -62140208 - MIR SINE MIR -10 252 5 658 216 163 0 chrX 114835125 114835278 -62138862 - MER5A DNA MER1_type 0 189 12 443 231 77 39 chrX 114835716 114835846 -62138294 - MIR SINE MIR -58 150 16 320 286 171 40 chrX 114836040 114836215 -62137925 - L2 LINE L2 0 3272 3075 252 319 118 35 chrX 114836353 114836497 -62137643 - L2 LINE L2 -219 3053 2898 186 246 0 66 chrX 114836496 114836557 -62137583 - L3b LINE CR1 -312 1271 1215 * 640 251 39 111 chrX 114836659 114836866 -62137274 + MER91A DNA MER1_type 1 192 -4 378 257 137 22 chrX 114837714 114837898 -62136242 - MLT1J1 LTR MaLR -237 209 45 1433 164 0 4 chrX 114838265 114838496 -62135644 - AluJb SINE Alu -20 292 63 2415 108 0 0 chrX 114838513 114838820 -62135320 + AluSx SINE Alu 1 307 -5 2563 42 0 10 chrX 114839869 114840175 -62133965 + AluY SINE Alu 1 303 -8 22 0 0 0 chrX 114840526 114840548 -62133592 + AT_rich Low_complexity Low_complexity 1 22 0 291 71 0 0 chrX 114841878 114841920 -62132220 + (CA)n Simple_repeat Simple_repeat 2 43 0 4160 159 31 7 chrX 114841981 114842699 -62131441 - L1MD1 LINE L1 0 6242 5508 338 202 19 58 chrX 114843671 114843775 -62130365 - L1MC5 LINE L1 -24 7937 7838 582 327 64 17 chrX 114843973 114844270 -62129870 + LTR16C LTR ERVL 181 491 0 3293 40 0 5 chrX 114844287 114844696 -62129444 + L1PA5 LINE L1 5779 6154 0 1947 138 3 7 chrX 114845040 114845323 -62128817 - AluJo SINE Alu -30 282 1 2302 102 23 0 chrX 114845362 114845667 -62128473 + AluSx SINE Alu 1 312 0 228 272 12 37 chrX 114845776 114845857 -62128283 + Charlie4 DNA MER1_type 1883 1961 0 634 246 132 18 chrX 114847081 114847301 -62126839 - MIR SINE MIR -6 256 12 790 282 42 29 chrX 114847642 114847883 -62126257 - MIR SINE MIR -16 246 3 1140 176 5 0 chrX 114847893 114848098 -62126042 + L1MC3 LINE L1 7266 7471 -314 2912 124 14 9 chrX 114848142 114848585 -62125555 + MER65A LTR ERV1 1 445 0 5370 210 60 73 chrX 114848645 114849164 -62124976 + MER65A-int LTR ERV1 61 585 -4286 792 167 0 36 chrX 114849164 114849302 -62124838 + AluJo SINE Alu 1 133 -169 5370 210 60 73 chrX 114849302 114849515 -62124625 + MER65A-int LTR ERV1 585 799 -4072 2218 91 0 7 chrX 114849515 114849836 -62124304 - AluSx SINE Alu 0 319 1 5370 210 60 73 chrX 114849836 114850941 -62123199 + MER65A-int LTR ERV1 799 1877 -2994 9227 173 18 6 chrX 114850944 114851999 -62122141 + L1PB2 LINE L1 3326 4367 -1784 216 0 0 0 chrX 114851999 114852023 -62122117 + (CAA)n Simple_repeat Simple_repeat 2 25 0 9227 173 18 6 chrX 114852023 114853758 -62120382 + L1PB2 LINE L1 4367 6149 -2 700 273 35 43 chrX 114853872 114854103 -62120037 - MIR SINE MIR -14 248 20 268 350 6 40 chrX 114854354 114854531 -62119609 - HERVL-A2 LTR ERVL -973 4791 4621 * 619 343 37 19 chrX 114854527 114854798 -62119342 - HERVL-A2 LTR ERVL -1210 4444 4169 * 701 343 15 19 chrX 114854795 114855066 -62119074 - HERVL-A2 LTR ERVL -1959 3805 3536 788 241 108 9 chrX 114855190 114855402 -62118738 + MLT1E3 LTR MaLR 1 233 -360 905 178 0 78 chrX 114855405 114855596 -62118544 + AluJo SINE Alu 133 308 -4 1298 249 32 6 chrX 114855624 114855937 -62118203 + MLT1E3 LTR MaLR 289 609 -15 1071 155 32 60 chrX 114855957 114856209 -62117931 - L1ME2 LINE L1 -66 6098 5854 277 302 75 38 chrX 114856519 114856678 -62117462 - HERVL-A2 LTR ERVL -5082 572 408 263 309 41 31 chrX 114856866 114856963 -62117177 - HERVL-A2 LTR ERVL -4860 136 39 432 82 0 0 chrX 114857244 114857305 -62116835 + (CA)n Simple_repeat Simple_repeat 2 62 0 736 311 16 29 chrX 114857665 114857977 -62116163 - L2 LINE L2 -656 2658 2351 1277 253 112 12 chrX 114858226 114858672 -62115468 - MLT1G1 LTR MaLR -45 550 10 1037 272 0 8 chrX 114858855 114859094 -62115046 - MIR SINE MIR -4 258 22 630 315 42 17 chrX 114859307 114859545 -62114595 - MIR SINE MIR -10 252 9 740 82 0 0 chrX 114860070 114860168 -62113972 + L1PB1 LINE L1 6053 6150 -1 27 0 0 0 chrX 114860168 114860195 -62113945 + AT_rich Low_complexity Low_complexity 1 27 0 2793 133 28 14 chrX 114860735 114861157 -62112983 - MSTA LTR MaLR 0 428 1 21 36 0 0 chrX 114862022 114862050 -62112090 + AT_rich Low_complexity Low_complexity 1 28 0 2186 119 0 7 chrX 114862060 114862363 -62111777 + AluSx SINE Alu 1 301 -11 3170 167 2 34 chrX 114862487 114863203 -62110937 - L1M4 LINE L1 -1117 5029 4368 2044 151 35 25 chrX 114863178 114863811 -62110329 + L1MA9 LINE L1 4945 5591 -721 * 2055 172 37 26 chrX 114863820 114864298 -62109842 - MLT2A2 LTR ERVL -26 489 1 2771 177 13 13 chrX 114864301 114864511 -62109629 + L1MA9 LINE L1 5590 5799 -513 348 24 0 0 chrX 114864511 114864552 -62109588 + (GA)n Simple_repeat Simple_repeat 2 42 0 2771 177 13 13 chrX 114864552 114864947 -62109193 + L1MA9 LINE L1 5799 6291 -21 885 215 33 8 chrX 114865658 114865900 -62108240 + L1MC5 LINE L1 7302 7549 -412 229 289 0 0 chrX 114865973 114866056 -62108084 + L1MC4 LINE L1 7947 8029 -13 249 33 0 0 chrX 114866158 114866188 -62107952 + (TAGA)n Simple_repeat Simple_repeat 1 30 0 5621 102 10 11 chrX 114866198 114867014 -62107126 - L1PA16 LINE L1 0 6166 5352 2365 107 0 0 chrX 114867024 114867334 -62106806 - AluSx SINE Alu -2 310 1 3815 207 11 5 chrX 114867358 114868181 -62105959 - L1PA16 LINE L1 -985 5161 4334 563 161 43 117 chrX 114868209 114868371 -62105769 - MLT1A1 LTR MaLR -215 150 1 243 0 0 0 chrX 114868436 114868463 -62105677 + (CA)n Simple_repeat Simple_repeat 2 28 0 436 131 12 12 chrX 114868560 114868644 -62105496 + CT-rich Low_complexity Low_complexity 2 85 0 568 190 35 0 chrX 114869182 114869298 -62104842 + MER103 DNA DNA 1 120 -46 2453 79 3 0 chrX 114869763 114870066 -62104074 + AluSp SINE Alu 1 304 -9 717 223 20 0 chrX 114870956 114871104 -62103036 + MIR SINE MIR 112 262 0 1320 140 0 0 chrX 114871245 114871438 -62102702 + L1MA7 LINE L1 5619 5811 -480 405 0 0 0 chrX 114871438 114871483 -62102657 + (TG)n Simple_repeat Simple_repeat 1 45 0 20284 183 64 28 chrX 114871483 114876289 -62097851 - L1PA14 LINE L1 -9 7590 2424 2077 139 7 0 chrX 114876289 114876591 -62097549 - AluSx SINE Alu -8 304 1 20284 183 64 28 chrX 114876591 114879106 -62095034 - L1PA14 LINE L1 -5175 2424 1 2243 105 0 0 chrX 114879152 114879446 -62094694 + AluSq SINE Alu 1 294 -19 1336 49 0 16 chrX 114879450 114879633 -62094507 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2284 144 8 93 chrX 114879635 114879647 -62094493 + L1MA7 LINE L1 5821 5832 -459 809 220 0 0 chrX 114879647 114879779 -62094361 + FLAM_A SINE Alu 1 132 -1 2284 144 8 93 chrX 114879779 114879985 -62094155 + L1MA7 LINE L1 5832 6054 -237 1942 160 0 0 chrX 114879985 114880272 -62093868 + AluJo SINE Alu 1 287 -25 2284 144 8 93 chrX 114880272 114880567 -62093573 + L1MA7 LINE L1 6054 6291 0 2119 137 0 0 chrX 114880791 114881091 -62093049 - AluSx SINE Alu -12 300 1 261 259 0 37 chrX 114881099 114881180 -62092960 + L2 LINE L2 3187 3264 -8 237 33 0 0 chrX 114881515 114881545 -62092595 + (TTG)n Simple_repeat Simple_repeat 2 31 0 4740 173 34 19 chrX 114882014 114882492 -62091648 + L1MB4 LINE L1 4960 5430 -750 2062 130 0 7 chrX 114882492 114882776 -62091364 + AluSx SINE Alu 3 284 -28 243 61 0 0 chrX 114882776 114882809 -62091331 + (CA)n Simple_repeat Simple_repeat 2 34 0 4740 173 34 19 chrX 114882809 114883536 -62090604 + L1MB4 LINE L1 5429 6180 0 1669 215 77 48 chrX 114885339 114885818 -62088322 - Charlie4a DNA MER1_type -15 493 1 733 142 0 0 chrX 114885954 114886060 -62088080 - MLT1A1 LTR MaLR 0 365 260 2179 108 16 25 chrX 114886060 114886440 -62087700 + AluSx SINE Alu 1 377 0 1437 181 75 0 chrX 114886440 114886694 -62087446 - MLT1A1 LTR MaLR -92 273 1 409 264 48 18 chrX 114886739 114886888 -62087252 + L1MC5 LINE L1 7785 7994 -1 1016 198 0 0 chrX 114886908 114887070 -62087070 + FRAM SINE Alu 1 162 -4 2033 152 0 3 chrX 114887104 114887414 -62086726 + AluSx SINE Alu 2 310 -2 220 220 20 0 chrX 114887454 114887504 -62086636 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 621 232 0 63 chrX 114888797 114888987 -62085153 + MIR SINE MIR 15 192 -70 290 209 44 22 chrX 114889348 114889439 -62084701 + GA-rich Low_complexity Low_complexity 5 97 0 1869 134 29 146 chrX 114889443 114889478 -62084662 + MLT1A2 LTR MaLR 3 40 -334 213 65 0 0 chrX 114889478 114889509 -62084631 + (TA)n Simple_repeat Simple_repeat 2 32 0 2599 58 0 7 chrX 114889509 114889817 -62084323 - AluY SINE Alu -5 306 1 1869 134 29 146 chrX 114889817 114890199 -62083941 + MLT1A2 LTR MaLR 38 372 -2 234 291 63 0 chrX 114891256 114891335 -62082805 + MIR SINE MIR 179 262 0 2129 118 3 10 chrX 114891405 114891701 -62082439 + AluSx SINE Alu 1 294 -18 1688 181 24 0 chrX 114892285 114892578 -62081562 + AluJo SINE Alu 1 300 -12 353 136 0 34 chrX 114892599 114892658 -62081482 + LOR1a LTR ERV1 1 57 -440 346 125 0 18 chrX 114892696 114892752 -62081388 + LOR1b LTR ERV1 24 78 -383 504 169 0 0 chrX 114892757 114892834 -62081306 - FLAM SINE Alu -21 122 46 21 36 0 0 chrX 114892977 114893005 -62081135 + AT_rich Low_complexity Low_complexity 1 28 0 2298 97 10 7 chrX 114893077 114893386 -62080754 + AluSg SINE Alu 1 310 0 2096 279 31 13 chrX 114893430 114894064 -62080076 + L1MEc LINE L1 37 682 -5714 5308 152 41 67 chrX 114894064 114894105 -62080035 + L1MA9 LINE L1 2936 2977 -3335 704 238 0 0 chrX 114894105 114894231 -62079909 + FLAM_A SINE Alu 1 126 -7 5308 152 41 67 chrX 114894231 114894289 -62079851 + L1MA9 LINE L1 2977 3035 -3277 2234 110 53 39 chrX 114894289 114894496 -62079644 + MER46B DNA MER2_type 2 94 -2637 1991 148 0 0 chrX 114894496 114894801 -62079339 + AluSx SINE Alu 6 310 0 2234 110 53 39 chrX 114894801 114894947 -62079193 + MER46B DNA MER2_type 94 236 0 5308 152 41 67 chrX 114894947 114896160 -62077980 + L1MA9 LINE L1 3035 6306 -6 2213 243 35 7 chrX 114896165 114896853 -62077287 + L1M4 LINE L1 3030 3736 -2410 744 283 33 25 chrX 114896866 114896996 -62077144 + MIR SINE MIR 21 148 -114 2631 119 11 16 chrX 114896996 114897373 -62076767 + THE1C LTR MaLR 1 375 0 10956 99 36 42 chrX 114897373 114898962 -62075178 + THE1C-int LTR MaLR 1 1580 0 2636 128 11 11 chrX 114898962 114899337 -62074803 + THE1C LTR MaLR 1 375 0 744 283 33 25 chrX 114899337 114899444 -62074696 + MIR SINE MIR 147 262 0 2183 147 8 14 chrX 114899943 114900299 -62073841 + MLT1B LTR MaLR 22 488 -17 270 128 0 0 chrX 114900286 114900325 -62073815 + Alu SINE Alu 243 281 -21 * 432 0 0 0 chrX 114900325 114900373 -62073767 + (CA)n Simple_repeat Simple_repeat 1 48 0 868 301 108 40 chrX 114900429 114900950 -62073190 + L2 LINE L2 2700 3263 -9 822 264 88 41 chrX 114901119 114901520 -62072620 - Charlie8 DNA MER1_type -2180 237 3 489 279 126 14 chrX 114902464 114902679 -62071461 + L1MC4a LINE L1 5688 5926 -1882 460 163 0 0 chrX 114902729 114902815 -62071325 - L1MA4 LINE L1 -7 6293 6208 2733 149 57 59 chrX 114903045 114903099 -62071041 - L1MB3 LINE L1 -9 6174 6121 842 196 0 0 chrX 114903099 114903232 -62070908 - FLAM_A SINE Alu 0 133 1 2733 149 57 59 chrX 114903232 114903464 -62070676 - L1MB3 LINE L1 -62 6121 5890 2431 93 0 3 chrX 114903464 114903775 -62070365 + AluSx SINE Alu 1 310 -2 2733 149 57 59 chrX 114903775 114904030 -62070110 - L1MB3 LINE L1 -293 5890 5633 1980 137 6 30 chrX 114904031 114904296 -62069844 - MER47A DNA MER2_type -1958 365 108 2263 136 29 32 chrX 114904296 114904672 -62069468 - THE1C LTR MaLR 0 375 1 1980 137 6 30 chrX 114904672 114904743 -62069397 - MER47A DNA MER2_type -2215 108 37 3210 259 83 9 chrX 114904746 114905613 -62068527 - HERV16 LTR ERVL -4065 931 1 1850 256 14 23 chrX 114905613 114906042 -62068098 - LTR16A LTR ERVL 0 450 26 1348 318 50 42 chrX 114906067 114906681 -62067459 - HERV16 LTR ERVL -2382 2614 1996 519 166 131 148 chrX 114906681 114906910 -62067230 - L1MC4a LINE L1 -541 7267 7043 1135 298 80 56 chrX 114907127 114907630 -62066510 - REP3 LTR ERV -47 515 1 448 240 58 33 chrX 114907636 114907757 -62066383 + L2 LINE L2 3190 3313 0 514 271 39 66 chrX 114908069 114908250 -62065890 - MER5B DNA MER1_type -2 176 1 318 311 9 28 chrX 114908412 114908518 -62065622 + MIR SINE MIR 11 114 -148 240 264 0 0 chrX 114908528 114908581 -62065559 + L2 LINE L2 3210 3262 -10 219 271 12 35 chrX 114908605 114908690 -62065450 + MIR SINE MIR 130 212 -50 1654 171 3 41 chrX 114908709 114909025 -62065115 - AluJo SINE Alu 0 312 9 237 304 130 0 chrX 114909207 114909299 -62064841 - MIR SINE MIR -68 140 37 1876 130 0 31 chrX 114909315 114909654 -62064486 + AluJo SINE Alu 1 330 0 186 43 0 0 chrX 114910105 114910128 -62064012 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 425 351 41 55 chrX 114910134 114910479 -62063661 - L2 LINE L2 -19 3253 2914 361 307 44 0 chrX 114910618 114910732 -62063408 + MIR3 SINE MIR 67 185 -23 356 58 0 19 chrX 114910742 114910794 -62063346 + (GGGA)n Simple_repeat Simple_repeat 2 52 0 309 347 16 8 chrX 114910893 114911014 -62063126 + MIR SINE MIR 1 122 -140 * 511 273 22 50 chrX 114911013 114911050 -62063090 - L2 LINE L2 0 3272 3235 2223 174 152 35 chrX 114911050 114911511 -62062629 - MLT2B2 LTR ERVL 0 515 1 511 273 22 50 chrX 114911511 114911612 -62062528 - L2 LINE L2 -37 3235 3138 25 0 0 0 chrX 114912030 114912055 -62062085 + AT_rich Low_complexity Low_complexity 1 25 0 2303 89 13 3 chrX 114912055 114912359 -62061781 - AluSc SINE Alu -2 307 1 2379 83 0 6 chrX 114912359 114912671 -62061469 - AluSx SINE Alu -2 310 1 1616 167 13 29 chrX 114912771 114913077 -62061063 - AluJo SINE Alu -9 303 3 509 247 105 71 chrX 114913229 114913468 -62060672 + MIR SINE MIR 13 259 -3 2186 123 0 19 chrX 114913734 114914050 -62060090 + AluSg SINE Alu 1 310 0 250 235 82 35 chrX 114914539 114914624 -62059516 - L2 LINE L2 -4 3309 3221 1045 261 140 27 chrX 114914705 114915096 -62059044 + L1ME4a LINE L1 5551 6015 -106 1684 158 62 0 chrX 114915096 114915388 -62058752 + AluJo SINE Alu 1 310 -2 1045 261 140 27 chrX 114915388 114915509 -62058631 + L1ME4a LINE L1 6015 6121 0 1861 136 0 18 chrX 114915542 114915822 -62058318 + AluSx SINE Alu 1 275 -37 188 65 0 32 chrX 114915830 114915861 -62058279 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 3055 190 35 28 chrX 114916019 114916666 -62057474 - L1MD2 LINE L1 -22 6337 5686 1062 120 0 0 chrX 114916677 114916852 -62057288 + (TA)n Simple_repeat Simple_repeat 1 175 0 1880 134 36 4 chrX 114916852 114917127 -62057013 - AluSx SINE Alu -28 284 1 236 364 106 8 chrX 114917308 114917440 -62056700 + L2 LINE L2 3112 3256 -16 * 268 229 36 72 chrX 114917438 114917521 -62056619 + MER5B DNA MER1_type 90 169 -9 2643 39 0 0 chrX 114919005 114919312 -62054828 + AluY SINE Alu 1 307 -4 548 294 145 13 chrX 114919763 114919991 -62054149 + MIR SINE MIR 5 262 0 195 322 212 0 chrX 114920032 114920150 -62053990 + MIR SINE MIR 1 143 -119 2206 167 117 26 chrX 114920187 114920715 -62053425 - MER69 DNA AcHobo -1 2525 1950 718 216 7 0 chrX 114920717 114920856 -62053284 - MER69 DNA AcHobo -832 394 255 3462 124 70 24 chrX 114920856 114921429 -62052711 - LTR9 LTR ERV1 0 612 14 21 0 0 0 chrX 114921466 114921487 -62052653 + AT_rich Low_complexity Low_complexity 1 21 0 14759 87 2 9 chrX 114921575 114924309 -62049831 - L1PA7 LINE L1 0 6154 3431 1563 162 30 43 chrX 114924590 114924893 -62049247 + AluJo SINE Alu 1 299 -13 2054 116 10 10 chrX 114924978 114925270 -62048870 - AluSx SINE Alu -20 292 1 370 168 56 47 chrX 114925502 114925609 -62048531 - L1MC5 LINE L1 -37 7924 7817 2388 106 0 0 chrX 114926066 114926377 -62047763 + AluSx SINE Alu 1 311 -1 289 301 86 25 chrX 114926530 114926693 -62047447 - MIR SINE MIR -70 192 20 1760 136 0 0 chrX 114927622 114927918 -62046222 + AluSx SINE Alu 42 312 0 1808 111 4 4 chrX 114928045 114928298 -62045842 + AluSx SINE Alu 1 253 -59 210 361 92 27 chrX 114928317 114928655 -62045485 - L2 LINE L2 -615 2699 2340 564 166 32 64 chrX 114928658 114928815 -62045325 - L1MC5 LINE L1 -34 7927 7776 2171 78 0 81 chrX 114928825 114929040 -62045100 - AluSg SINE Alu 0 310 155 2434 68 3 0 chrX 114929040 114929332 -62044808 - AluY SINE Alu -18 293 1 2171 78 0 81 chrX 114929332 114929476 -62044664 - AluSg SINE Alu -155 155 1 2138 172 28 10 chrX 114929486 114930172 -62043968 - L1MA6 LINE L1 0 6291 5571 492 229 63 22 chrX 114930177 114930281 -62043859 - L1MC5 LINE L1 -179 7782 7684 1550 201 43 0 chrX 114930281 114930559 -62043581 - AluJo SINE Alu -22 290 1 492 229 63 22 chrX 114930559 114930677 -62043463 - L1MC5 LINE L1 -277 7684 7551 396 359 0 0 chrX 114930709 114930840 -62043300 - L2 LINE L2 -996 2318 2188 783 117 67 8 chrX 114930999 114931119 -62043021 + FLAM_C SINE Alu 5 131 -2 224 324 54 47 chrX 114931275 114931423 -62042717 + MIR SINE MIR 59 207 -55 1000 264 11 35 chrX 114931598 114931859 -62042281 - MIR SINE MIR -1 261 7 476 172 51 76 chrX 114931885 114932042 -62042098 + L1MC5 LINE L1 7155 7307 -654 2230 96 0 13 chrX 114932050 114932352 -62041788 + AluSx SINE Alu 1 298 -14 1886 135 0 46 chrX 114932356 114932659 -62041481 + AluJo SINE Alu 1 289 -23 347 113 0 0 chrX 114932701 114932754 -62041386 - MER53 DNA DNA -2 187 135 2427 59 0 0 chrX 114932763 114933053 -62041087 + AluY SINE Alu 1 290 -21 418 135 16 24 chrX 114933059 114933185 -62040955 + (TA)n Simple_repeat Simple_repeat 1 125 0 706 104 17 17 chrX 114933213 114933328 -62040812 - MER53 DNA DNA -74 115 1 880 147 11 85 chrX 114933342 114933519 -62040621 - FRAM SINE Alu -2 164 1 1400 212 83 65 chrX 114933532 114933637 -62040503 + L1MC5 LINE L1 7334 7436 -525 1730 169 20 13 chrX 114933637 114933939 -62040201 + AluJo SINE Alu 1 304 -8 1400 212 83 65 chrX 114933939 114934229 -62039911 + L1MC5 LINE L1 7436 7744 -217 2459 38 7 3 chrX 114934229 114934519 -62039621 - AluY SINE Alu -19 292 2 1400 212 83 65 chrX 114934519 114934688 -62039452 + L1MC5 LINE L1 7744 7909 -52 2225 110 0 7 chrX 114934804 114935103 -62039037 + AluSx SINE Alu 1 297 -15 398 164 120 1 chrX 114935682 114935785 -62038355 - L1MC/D LINE L1 -313 5808 5710 * 5787 159 9 2 chrX 114935776 114936761 -62037379 - L1PA15 LINE L1 -1175 4971 3980 6146 118 11 22 chrX 114936761 114936795 -62037345 + L1PA15 LINE L1 4960 4993 -1172 2242 88 0 0 chrX 114936795 114937080 -62037060 + AluSg SINE Alu 24 308 -2 6146 118 11 22 chrX 114937080 114937425 -62036715 + L1PA15 LINE L1 4993 5340 -825 1865 142 46 80 chrX 114937425 114937724 -62036416 + THE1C LTR MaLR 1 286 -89 2109 128 7 0 chrX 114937724 114938029 -62036111 + AluSx SINE Alu 6 312 0 1865 142 46 80 chrX 114938029 114938117 -62036023 + THE1C LTR MaLR 286 375 0 6146 118 11 22 chrX 114938117 114938701 -62035439 + L1PA15 LINE L1 5340 5929 -236 2305 89 0 3 chrX 114938701 114938992 -62035148 - AluSx SINE Alu -17 295 6 2339 98 3 0 chrX 114938997 114939294 -62034846 - AluSq SINE Alu -12 301 4 6146 118 11 22 chrX 114939294 114939545 -62034595 + L1PA15 LINE L1 5933 6165 0 1729 157 40 3 chrX 114939553 114939853 -62034287 + AluJo SINE Alu 1 311 -1 326 185 111 0 chrX 114939885 114939966 -62034174 - L1MC/D LINE L1 -460 5661 5572 2248 128 0 0 chrX 114940026 114940322 -62033818 + AluSx SINE Alu 1 296 -16 2257 88 0 3 chrX 114940497 114940781 -62033359 - AluSx SINE Alu -29 283 1 28 0 0 0 chrX 114940790 114940818 -62033322 + AT_rich Low_complexity Low_complexity 1 28 0 965 126 20 0 chrX 114940910 114941061 -62033079 - L1MA9 LINE L1 0 6312 6159 260 254 95 24 chrX 114941322 114941491 -62032649 - L1MC4a LINE L1 -1765 6043 5863 388 309 41 8 chrX 114941709 114941832 -62032308 + L2 LINE L2 3134 3260 -12 1335 130 44 101 chrX 114942033 114942199 -62031941 - AluSx SINE Alu -14 298 157 408 20 0 0 chrX 114942199 114942248 -62031892 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1335 130 44 101 chrX 114942248 114942397 -62031743 - AluSx SINE Alu -155 157 1 800 12 0 0 chrX 114942397 114942482 -62031658 - AluY SINE Alu -177 134 50 2207 65 0 7 chrX 114942482 114942761 -62031379 - AluY SINE Alu -34 277 1 2146 91 0 10 chrX 114942785 114943082 -62031058 + AluSq SINE Alu 10 303 -10 2405 55 35 0 chrX 114943141 114943430 -62030710 + AluSq SINE Alu 1 299 -14 413 215 21 0 chrX 114943430 114943523 -62030617 + MIR SINE MIR 44 138 -70 316 250 57 23 chrX 114943531 114943619 -62030521 - L2 LINE L2 0 3272 3182 * 641 284 62 36 chrX 114943608 114943833 -62030307 - MIR SINE MIR 0 262 32 2360 95 0 13 chrX 114945110 114945427 -62028713 - AluSq SINE Alu 0 313 1 481 248 28 43 chrX 114945821 114945962 -62028178 + MIR3 SINE MIR 44 182 -26 1913 157 0 3 chrX 114946107 114946412 -62027728 - AluSx SINE Alu -5 307 4 2084 116 3 3 chrX 114949010 114949319 -62024821 - AluSx SINE Alu 0 309 1 2412 75 3 0 chrX 114950101 114950395 -62023745 - AluSp SINE Alu -18 295 1 269 226 19 0 chrX 114950676 114950729 -62023411 - MER3 DNA MER1_type -124 85 32 2353 94 0 0 chrX 114951173 114951470 -62022670 + AluSq SINE Alu 1 297 -16 2096 96 50 0 chrX 114952081 114952362 -62021778 - AluSq SINE Alu -18 295 1 1493 140 62 56 chrX 114952815 114952862 -62021278 - MER33 DNA MER1_type -2261 324 279 2566 44 0 0 chrX 114952862 114953158 -62020982 - AluY SINE Alu -15 296 1 1493 140 62 56 chrX 114953158 114953432 -62020708 - MER33 DNA MER1_type -2306 279 1 2155 84 3 58 chrX 114953725 114954035 -62020105 - AluSg SINE Alu -17 293 1 2381 82 10 0 chrX 114954037 114954342 -62019798 - AluY SINE Alu -3 308 1 543 303 88 53 chrX 114954786 114955014 -62019126 + MIR SINE MIR 21 256 -6 2222 103 0 0 chrX 114956880 114957191 -62016949 + AluSx SINE Alu 1 311 0 251 146 49 158 chrX 114957689 114957771 -62016369 - HERVL LTR ERVL -515 5139 5067 319 283 108 17 chrX 114958886 114959006 -62015134 + L2 LINE L2 3178 3308 -5 927 218 168 18 chrX 114960656 114961037 -62013103 + L1MC5 LINE L1 7301 7738 -223 624 115 115 0 chrX 114961040 114961127 -62013013 + AluS SINE Alu 2 98 -215 2285 109 3 0 chrX 114961146 114961450 -62012690 + AluSx SINE Alu 1 305 -7 737 206 63 23 chrX 114961451 114961626 -62012514 + L1MC5 LINE L1 7732 7913 -48 447 19 0 0 chrX 114961659 114961711 -62012429 + (CA)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chrX 114962249 114962291 -62011849 + AT_rich Low_complexity Low_complexity 1 42 0 2349 108 0 9 chrX 114962652 114962967 -62011173 + AluSx SINE Alu 1 312 0 193 260 52 83 chrX 114963474 114963570 -62010570 + L2 LINE L2 3180 3272 0 2238 112 0 0 chrX 114963744 114964039 -62010101 - AluSg SINE Alu -15 295 1 2219 110 3 0 chrX 114964040 114964332 -62009808 - AluSx SINE Alu -19 293 1 340 163 12 47 chrX 114964508 114964594 -62009546 + L1MD3 LINE L1 7912 7994 -1 2254 104 0 0 chrX 114964889 114965176 -62008964 + AluSx SINE Alu 1 287 -25 252 204 161 0 chrX 114966140 114966233 -62007907 + L1ME4a LINE L1 5248 5355 -791 841 168 0 8 chrX 114966296 114966427 -62007713 - FRAM SINE Alu -12 164 35 339 195 11 35 chrX 114966445 114966532 -62007608 + L1ME4a LINE L1 5813 5897 -224 * 1784 157 77 18 chrX 114966511 114966899 -62007241 + L1MC2 LINE L1 5934 6344 0 1541 133 78 0 chrX 114966909 114967164 -62006976 + L1MA4 LINE L1 6008 6282 -18 528 210 62 87 chrX 114967390 114967558 -62006582 + L2 LINE L2 3124 3288 -25 2473 77 0 0 chrX 114967558 114967869 -62006271 - AluSq SINE Alu -1 312 2 528 210 62 87 chrX 114967869 114967895 -62006245 + L2 LINE L2 3288 3313 0 22 35 0 0 chrX 114968160 114968189 -62005951 + AT_rich Low_complexity Low_complexity 1 29 0 835 153 66 38 chrX 114970676 114970859 -62003281 + MER53 DNA DNA 1 188 -1 1511 169 51 4 chrX 114970903 114971064 -62003076 - AluJo SINE Alu -22 290 109 201 39 0 0 chrX 114971064 114971090 -62003050 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1511 169 51 4 chrX 114971090 114971201 -62002939 - AluJo SINE Alu -203 109 5 1651 193 7 13 chrX 114971342 114971642 -62002498 - AluJb SINE Alu -14 298 1 7390 103 11 22 chrX 114972157 114972359 -62001781 - L1MA1 LINE L1 0 6302 6099 2535 126 19 6 chrX 114972359 114972724 -62001416 - THE1C LTR MaLR -1 374 5 7390 103 11 22 chrX 114972724 114973853 -62000287 - L1MA1 LINE L1 -203 6099 4985 2028 128 0 17 chrX 114973854 114974152 -61999988 - AluSg SINE Alu -17 293 1 1361 195 21 3 chrX 114974152 114974439 -61999701 - L1MA1 LINE L1 -1674 4472 4181 343 172 0 16 chrX 114976443 114976507 -61997633 + MER33 DNA MER1_type 34 96 -228 2063 106 0 48 chrX 114976526 114976838 -61997302 - AluSx SINE Alu -13 299 3 2260 111 0 3 chrX 114977327 114977633 -61996507 + AluSc SINE Alu 1 305 -4 352 295 78 59 chrX 114978011 114978282 -61995858 - L1M2 LINE L1 -5698 1151 876 198 143 0 0 chrX 114978322 114978357 -61995783 + (GGA)n Simple_repeat Simple_repeat 1 35 0 308 275 127 93 chrX 114978536 114978922 -61995218 - L1M2 LINE L1 -5693 1156 758 718 167 234 17 chrX 114981336 114981419 -61992721 + MER33 DNA MER1_type 34 98 -2487 2162 103 3 0 chrX 114981419 114981709 -61992431 - AluY SINE Alu -20 291 1 718 167 234 17 chrX 114981709 114981864 -61992276 + MER33 DNA MER1_type 98 324 0 1006 142 118 0 chrX 114981961 114982130 -61992010 + MER5A DNA MER1_type 1 189 0 2041 119 37 0 chrX 114982479 114982774 -61991366 + AluSx SINE Alu 1 306 -6 815 223 58 13 chrX 114982971 114983195 -61990945 + MER115 DNA AcHobo 458 691 -2 189 107 0 0 chrX 114985021 114985049 -61989091 + (A)n Simple_repeat Simple_repeat 1 28 0 1897 147 0 20 chrX 114985641 114985947 -61988193 + AluSx SINE Alu 1 300 -12 305 353 153 25 chrX 114986158 114986393 -61987747 - L2 LINE L2 -4 3268 3004 486 33 0 0 chrX 114987651 114987711 -61986429 + (CA)n Simple_repeat Simple_repeat 2 61 0 313 371 43 0 chrX 114987938 114988078 -61986062 + L2 LINE L2 3127 3272 0 324 0 0 0 chrX 114988173 114988209 -61985931 + (TG)n Simple_repeat Simple_repeat 2 37 0 1578 237 5 17 chrX 114988243 114988661 -61985479 + L1M4 LINE L1 4910 5322 -824 868 169 18 12 chrX 114988666 114988687 -61985453 + L1MA6 LINE L1 6032 6051 -249 2420 108 29 40 chrX 114988687 114989066 -61985074 - THE1C LTR MaLR 0 375 1 868 169 18 12 chrX 114989066 114989210 -61984930 + L1MA6 LINE L1 6051 6198 -102 * 6447 169 24 6 chrX 114989203 114990282 -61983858 + L1PA13 LINE L1 3060 4118 -2045 5175 39 0 5 chrX 114990282 114990865 -61983275 + L1PA5 LINE L1 5570 6153 -1 * 6447 167 19 2 chrX 114990860 114991662 -61982478 + L1PA13 LINE L1 4154 4941 -1222 6447 169 24 6 chrX 114990865 114991662 -61982478 + L1PA13 LINE L1 4118 4899 -1264 2293 90 7 0 chrX 114991662 114991961 -61982179 + AluY SINE Alu 1 301 -10 6447 169 24 6 chrX 114991961 114993173 -61980967 + L1PA13 LINE L1 4899 6161 -2 6447 167 19 2 chrX 114991961 114993159 -61980981 + L1PA13 LINE L1 4941 6161 -2 11009 126 35 8 chrX 114993177 114994871 -61979269 - L1PBa LINE L1 -2853 4009 2362 2021 147 62 42 chrX 114994871 114995225 -61978915 - THE1B LTR MaLR -1 363 3 11009 126 35 8 chrX 114995225 114996682 -61977458 - L1PBa LINE L1 -4500 2362 625 1165 152 5 0 chrX 114996674 114996871 -61977269 - L1PBa LINE L1 -6663 200 3 * 438 127 51 0 chrX 114996874 114996953 -61977187 - L1M2 LINE L1 -789 5502 5420 * 1378 114 51 11 chrX 114996950 114997239 -61976901 + L1M2 LINE L1 5116 5419 -743 591 279 6 27 chrX 114998810 114998993 -61975147 + MER5A DNA MER1_type 10 188 -1 546 232 26 26 chrX 114999135 114999286 -61974854 + MIR SINE MIR 109 259 -3 2316 91 0 13 chrX 114999433 114999741 -61974399 - AluY SINE Alu -7 304 1 322 362 127 18 chrX 114999743 115000019 -61974121 + L2 LINE L2 2904 3209 -63 253 295 36 9 chrX 115000030 115000142 -61973998 - L1ME4a LINE L1 -38 6083 5969 1188 248 64 56 chrX 115000258 115000866 -61973274 - L1ME1 LINE L1 -105 6016 5423 303 293 13 0 chrX 115000866 115000941 -61973199 + L2 LINE L2 3185 3260 -12 2660 155 21 7 chrX 115001135 115001554 -61972586 + MSTB LTR MaLR 1 425 -1 811 289 80 28 chrX 115001799 115002086 -61972054 + MLT1J2 LTR MaLR 21 322 -128 15851 165 54 13 chrX 115002591 115005188 -61968952 + L1P5 LINE L1 6 2494 -4373 2235 100 0 3 chrX 115005188 115005478 -61968662 + AluSc SINE Alu 1 289 -20 15851 165 54 13 chrX 115005478 115008287 -61965853 + L1P5 LINE L1 2494 5724 -1143 1826 113 58 4 chrX 115008287 115008561 -61965579 + AluSx SINE Alu 11 299 -13 15851 165 54 13 chrX 115008561 115009370 -61964770 + L1P5 LINE L1 5724 6498 -369 382 81 0 32 chrX 115009370 115009417 -61964723 + L1PA7 LINE L1 6093 6152 -2 424 259 19 68 chrX 115009420 115009582 -61964558 + MER66A LTR ERV1 101 254 -224 876 116 0 0 chrX 115009586 115009698 -61964442 + AluSq/x SINE Alu 4 115 -197 25 0 0 0 chrX 115009698 115009723 -61964417 + AT_rich Low_complexity Low_complexity 1 25 0 1065 103 7 0 chrX 115009723 115009869 -61964271 + MER66A LTR ERV1 245 391 -87 2553 115 10 31 chrX 115009881 115010081 -61964059 + L1PB1 LINE L1 5770 5960 -191 2593 68 0 0 chrX 115010081 115010392 -61963748 + AluY SINE Alu 1 311 0 2553 115 10 31 chrX 115010392 115010575 -61963565 + L1PB1 LINE L1 5960 6145 -6 190 393 0 0 chrX 115011220 115011281 -61962859 - L2 LINE L2 -181 3091 3031 272 275 0 14 chrX 115011281 115011350 -61962790 - L2 LINE L2 -19 3253 3186 446 254 101 29 chrX 115012010 115012148 -61961992 - MIR3 SINE MIR -23 185 38 376 207 23 0 chrX 115014569 115014656 -61959484 + L1MC5 LINE L1 7817 7905 -56 321 135 0 0 chrX 115015505 115015557 -61958583 + (A)n Simple_repeat Simple_repeat 1 52 0 230 192 231 0 chrX 115015988 115016040 -61958100 - L2 LINE L2 -4 3309 3246 370 272 61 26 chrX 115016077 115016229 -61957911 - MIR SINE MIR -62 146 40 471 157 0 45 chrX 115016390 115016479 -61957661 + L1ME3A LINE L1 6081 6165 -5 479 221 29 22 chrX 115017119 115017255 -61956885 - MER117 DNA MER1_type -60 137 1 863 237 23 0 chrX 115017469 115017684 -61956456 - L1PB1 LINE L1 -876 5270 5051 * 5853 105 36 5 chrX 115017681 115018538 -61955602 + L1PB1 LINE L1 5268 6151 0 22 0 0 0 chrX 115018538 115018560 -61955580 + AT_rich Low_complexity Low_complexity 1 22 0 419 249 52 72 chrX 115018963 115019156 -61954984 - MIR3 SINE MIR -4 204 16 3918 130 12 0 chrX 115019351 115020195 -61953945 + L1PA13 LINE L1 4977 5830 -333 33368 100 14 60 chrX 115020197 115026576 -61947564 + L1PA8 LINE L1 1 6400 -87 1093 97 0 0 chrX 115026575 115026729 -61947411 + L1PA13 LINE L1 5919 6072 -91 * 483 89 51 0 chrX 115026797 115026876 -61947264 + L1PA13 LINE L1 6078 6160 -3 456 335 76 78 chrX 115027224 115027672 -61946468 + L2 LINE L2 2826 3272 0 610 237 0 0 chrX 115030311 115030425 -61943715 - L2 LINE L2 -1 3312 3199 696 241 39 29 chrX 115030444 115030651 -61943489 + MIR SINE MIR 3 211 -51 219 204 37 19 chrX 115030862 115030916 -61943224 + MIR3 SINE MIR 111 165 -43 268 273 0 0 chrX 115030929 115030992 -61943148 + MIR SINE MIR 39 101 -107 644 222 55 34 chrX 115030995 115031252 -61942888 - L1MEd LINE L1 -4863 1256 1073 6566 67 4 0 chrX 115031431 115032254 -61941886 - L1PA8A LINE L1 -1 6130 5305 11543 97 4 7 chrX 115032254 115033888 -61940252 + L1PA8A LINE L1 3671 5299 -847 212 368 26 18 chrX 115034236 115034350 -61939790 - L2 LINE L2 -32 3281 3167 341 229 255 20 chrX 115034411 115034564 -61939576 - MIR SINE MIR -72 190 2 365 291 272 5 chrX 115034618 115034824 -61939316 + MIR SINE MIR 2 262 0 185 0 0 39 chrX 115035397 115035423 -61938717 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 24216 44 8 3 chrX 115035423 115039044 -61935096 - L1PA5 LINE L1 -16 6138 2503 2043 199 40 87 chrX 115039044 115039690 -61934450 - LTR6A LTR ERV1 0 564 1 18486 93 8 5 chrX 115039690 115042179 -61931961 - L1P LINE L1 -3640 2506 11 1212 253 81 55 chrX 115042718 115043068 -61931072 - MLT1J LTR MaLR -3 508 140 756 277 68 20 chrX 115043068 115043317 -61930823 - MIR SINE MIR 0 262 2 1212 253 81 55 chrX 115043317 115043461 -61930679 - MLT1J LTR MaLR -371 140 1 1225 166 0 0 chrX 115043533 115043726 -61930414 + AluSg SINE Alu 5 197 -113 570 59 0 0 chrX 115043727 115043795 -61930345 + AluSc SINE Alu 66 133 -176 1448 178 125 4 chrX 115043795 115044059 -61930081 + AluSc SINE Alu 1 296 -3 24 0 0 0 chrX 115044450 115044474 -61929666 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrX 115044483 115044509 -61929631 + AT_rich Low_complexity Low_complexity 1 26 0 1585 85 0 0 chrX 115044535 115044736 -61929404 - L1PB1 LINE L1 -1 6150 5950 246 91 0 0 chrX 115044738 115044771 -61929369 + L1PB1 LINE L1 5567 5599 -552 4791 61 30 22 chrX 115044771 115045884 -61928256 - MER11A LTR ERVK 0 1266 1 1479 65 0 0 chrX 115045884 115046070 -61928070 + L1PB1 LINE L1 5594 5779 -372 2266 121 7 0 chrX 115046073 115046380 -61927760 + AluSg SINE Alu 1 309 -1 360 17 85 0 chrX 115046383 115046442 -61927698 + A-rich Low_complexity Low_complexity 3 66 0 1232 123 1 13 chrX 115046442 115046635 -61927505 + L1PB1 LINE L1 5769 5934 -217 1894 195 61 21 chrX 115046635 115047014 -61927126 - MLT2C1 LTR ERVL -1 396 3 2094 154 0 0 chrX 115047672 115047984 -61926156 + AluJb SINE Alu 1 312 0 2403 73 0 13 chrX 115048033 115048373 -61925767 - AluSq SINE Alu 0 313 1 422 169 11 0 chrX 115048578 115048667 -61925473 + (TA)n Simple_repeat Simple_repeat 2 91 0 182 156 31 0 chrX 115048733 115048765 -61925375 + MIR SINE MIR 90 122 -86 376 248 109 0 chrX 115049114 115049251 -61924889 + MER103 DNA DNA 14 165 -1 3719 91 0 4 chrX 115049752 115050238 -61923902 + L1PA13 LINE L1 5680 6163 0 510 304 54 0 chrX 115050608 115050776 -61923364 - MER5A DNA MER1_type 0 189 13 225 196 0 0 chrX 115051178 115051224 -61922916 + CT-rich Low_complexity Low_complexity 3 48 0 494 313 49 92 chrX 115051338 115051642 -61922498 - L2 LINE L2 -5 3267 2977 690 272 72 57 chrX 115052004 115052339 -61921801 + MLT1K LTR MaLR 142 481 -107 4361 149 19 16 chrX 115053189 115053582 -61920558 - L1MA9 LINE L1 -21 6291 5901 279 0 0 0 chrX 115053582 115053613 -61920527 + (TG)n Simple_repeat Simple_repeat 2 32 0 4361 149 19 16 chrX 115053613 115054049 -61920091 - L1MA9 LINE L1 -411 5901 5361 288 186 0 0 chrX 115054258 115054317 -61919823 + GA-rich Low_complexity Low_complexity 2 60 0 1574 109 30 0 chrX 115056522 115056752 -61917388 + L1PA10 LINE L1 5932 6168 0 569 0 0 0 chrX 115056757 115056821 -61917319 + L1PA3 LINE L1 6089 6152 -3 424 266 203 68 chrX 115057350 115057778 -61916362 + L2 LINE L2 2826 3311 -2 23 0 0 0 chrX 115057835 115057858 -61916282 + AT_rich Low_complexity Low_complexity 1 23 0 417 123 0 0 chrX 115058520 115058585 -61915555 + (TG)n Simple_repeat Simple_repeat 2 66 0 492 99 0 0 chrX 115058591 115058662 -61915478 + (CA)n Simple_repeat Simple_repeat 2 72 0 1390 223 18 14 chrX 115059040 115059323 -61914817 + REP3 LTR ERV 1 284 -278 200 223 53 0 chrX 115059326 115059420 -61914720 + (TA)n Simple_repeat Simple_repeat 2 100 0 1550 214 3 7 chrX 115059440 115059729 -61914411 + REP3 LTR ERV 275 562 0 298 308 54 45 chrX 115060251 115060472 -61913668 - L2 LINE L2 -89 3224 3002 360 265 41 87 chrX 115060513 115060652 -61913488 + HAL1 LINE L1 889 1016 -1491 2285 109 0 3 chrX 115060652 115060956 -61913184 + AluSq SINE Alu 1 303 -10 360 265 41 87 chrX 115060956 115061035 -61913105 + HAL1 LINE L1 1016 1097 -1410 365 254 92 42 chrX 115061209 115061274 -61912866 - MIR SINE MIR -45 217 157 1059 179 26 30 chrX 115061274 115061508 -61912632 + L1MA7 LINE L1 6059 6291 0 365 254 92 42 chrX 115061508 115061584 -61912556 - MIR SINE MIR -105 157 69 2263 102 3 10 chrX 115061732 115062036 -61912104 + AluSg SINE Alu 1 302 -8 378 171 0 0 chrX 115062585 115062655 -61911485 + A-rich Low_complexity Low_complexity 1 70 0 319 328 38 13 chrX 115063820 115064006 -61910134 - MIR3 SINE MIR -42 166 13 844 261 63 4 chrX 115065062 115065300 -61908840 - MIR SINE MIR 0 262 11 373 192 55 0 chrX 115065308 115065414 -61908726 - L1PA8A LINE L1 0 6131 6051 535 0 0 0 chrX 115065414 115065473 -61908667 + L1PA3 LINE L1 5914 5972 -183 577 207 67 98 chrX 115065477 115065670 -61908470 + MER5A DNA MER1_type 1 187 -2 2286 87 13 7 chrX 115066326 115066624 -61907516 + AluSx SINE Alu 1 300 -12 618 287 80 34 chrX 115066632 115066869 -61907271 - MIR SINE MIR -13 249 2 422 200 76 76 chrX 115066875 115067020 -61907120 - MER103 DNA DNA -19 147 3 2127 83 7 0 chrX 115068707 115069023 -61905117 - AluSc SINE Alu 0 318 1 309 250 191 44 chrX 115069210 115069346 -61904794 + MIR SINE MIR 20 175 -87 575 270 66 10 chrX 115069508 115069704 -61904436 - MIR SINE MIR -52 210 4 261 200 0 0 chrX 115070335 115070380 -61903760 - L2 LINE L2 -17 3255 3211 252 195 165 29 chrX 115070485 115070612 -61903528 + MIR SINE MIR 91 250 -12 2060 233 101 20 chrX 115070730 115071267 -61902873 - MLT1E LTR MaLR -13 580 1 470 269 79 9 chrX 115071504 115071648 -61902492 - MIR SINE MIR -63 145 3 242 223 107 58 chrX 115072370 115072491 -61901649 + HAL1 LINE L1 2368 2494 -13 385 267 86 0 chrX 115072607 115072723 -61901417 + MIR SINE MIR 18 143 -119 213 300 0 38 chrX 115073737 115073817 -61900323 + MER5A DNA MER1_type 43 119 -70 579 191 8 38 chrX 115073847 115073978 -61900162 - MIR SINE MIR -4 258 132 598 95 0 0 chrX 115074256 115074340 -61899800 + AluSc SINE Alu 225 308 -1 941 266 20 12 chrX 115074487 115074735 -61899405 - MIR SINE MIR 0 262 13 333 0 0 0 chrX 115074790 115074827 -61899313 + (TG)n Simple_repeat Simple_repeat 2 38 0 3667 83 13 0 chrX 115074851 115075309 -61898831 - L1PA11 LINE L1 0 6174 5711 753 161 0 0 chrX 115075479 115075591 -61898549 + AluJb SINE Alu 2 113 -199 926 68 14 14 chrX 115075593 115075739 -61898401 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 2700 86 24 24 chrX 115076846 115077220 -61896920 + THE1C LTR MaLR 2 375 0 224 239 13 148 chrX 115077527 115077682 -61896458 + MIR SINE MIR 100 233 -29 1779 185 21 56 chrX 115077683 115078061 -61896079 - MLT1A1 LTR MaLR 0 365 1 2354 219 37 47 chrX 115078061 115078272 -61895868 + MLT1E3 LTR MaLR 9 221 -403 542 123 0 0 chrX 115078272 115078353 -61895787 + L1MA3 LINE L1 6225 6305 0 2354 219 37 47 chrX 115078353 115078364 -61895776 + MLT1E3 LTR MaLR 221 231 -393 2109 90 4 0 chrX 115078364 115078632 -61895508 + AluSg SINE Alu 35 303 -7 2354 219 37 47 chrX 115078632 115079030 -61895110 + MLT1E3 LTR MaLR 231 624 0 586 300 96 5 chrX 115079071 115079291 -61894849 + MIR SINE MIR 13 252 -10 424 303 54 103 chrX 115079321 115079582 -61894558 - L2 LINE L2 -19 3253 3006 503 202 42 25 chrX 115079585 115079704 -61894436 - MER5B DNA MER1_type -3 175 55 705 324 77 48 chrX 115079713 115080191 -61893949 - L2 LINE L2 -358 2956 2465 2964 6 0 0 chrX 115080327 115080644 -61893496 + AluYb8 SINE Alu 1 317 -1 707 250 71 43 chrX 115081936 115082266 -61891874 - MLT1J2 LTR MaLR -44 406 36 316 313 31 41 chrX 115083153 115083348 -61890792 + L1MC4a LINE L1 5728 5920 -1888 2210 128 0 0 chrX 115084164 115084476 -61889664 + AluSx SINE Alu 1 312 0 3016 163 42 14 chrX 115084499 115085053 -61889087 - Looper DNA T2_type -394 1164 596 21 36 0 0 chrX 115085100 115085128 -61889012 + AT_rich Low_complexity Low_complexity 1 28 0 876 273 34 4 chrX 115085137 115085375 -61888765 + L2 LINE L2 2725 2969 -345 1877 248 85 41 chrX 115085376 115085618 -61888522 + L1MC4 LINE L1 7284 7514 -528 2215 93 3 10 chrX 115085618 115085918 -61888222 - AluSx SINE Alu -14 298 1 1877 248 85 41 chrX 115085918 115086401 -61887739 + L1MC4 LINE L1 7514 8041 -1 711 287 22 22 chrX 115086429 115086659 -61887481 + L2 LINE L2 3084 3313 0 742 274 25 24 chrX 115086692 115086890 -61887250 - MIR SINE MIR -6 256 57 1833 151 0 11 chrX 115086890 115087168 -61886972 - AluJb SINE Alu -37 275 1 742 274 25 24 chrX 115087168 115087221 -61886919 - MIR SINE MIR -205 57 6 2395 194 109 94 chrX 115087750 115088513 -61885627 - L1MD1 LINE L1 -8 6234 5461 2310 87 17 3 chrX 115088525 115088823 -61885317 - AluSq SINE Alu -11 302 1 239 277 75 25 chrX 115089126 115089285 -61884855 + L1P LINE L1 4875 5041 -1105 1166 148 78 3 chrX 115089504 115089848 -61884292 + L1ME LINE L1 5136 5502 -660 281 297 190 26 chrX 115089904 115090099 -61884041 - L1MCa LINE L1 -5905 521 295 24 0 0 0 chrX 115090112 115090136 -61884004 + AT_rich Low_complexity Low_complexity 1 24 0 946 200 46 0 chrX 115090538 115090713 -61883427 + MER5A DNA MER1_type 1 183 -6 2193 110 0 38 chrX 115090716 115090853 -61883287 + AluSx SINE Alu 1 142 -170 2573 57 0 0 chrX 115090853 115091154 -61882986 + AluY SINE Alu 1 301 -10 2193 110 0 38 chrX 115091154 115091334 -61882806 + AluSx SINE Alu 142 306 -6 282 290 203 36 chrX 115091334 115091472 -61882668 - MIR3 SINE MIR -39 169 9 288 109 87 0 chrX 115092433 115092479 -61881661 + MSTC LTR MaLR 1 50 -378 687 168 28 0 chrX 115092486 115092593 -61881547 + FLAM_C SINE Alu 3 112 -31 673 160 14 14 chrX 115092652 115092796 -61881344 + GA-rich Low_complexity Low_complexity 1 144 0 2218 148 0 81 chrX 115092802 115093170 -61880970 + MSTC LTR MaLR 43 374 -54 2086 122 0 3 chrX 115093170 115093466 -61880674 + AluSx SINE Alu 3 297 -15 2218 148 0 81 chrX 115093466 115093517 -61880623 + MSTC LTR MaLR 374 428 0 237 218 54 88 chrX 115145186 115145333 -61828807 + L1ME4a LINE L1 5862 6003 -118 368 263 46 7 chrX 115145648 115145800 -61828340 + L1MC4a LINE L1 5783 5940 -1868 2201 112 13 13 chrX 115145950 115146263 -61827877 - AluSq SINE Alu 0 313 1 407 323 12 66 chrX 115146289 115146480 -61827660 + L2 LINE L2 2712 2887 -427 934 198 7 155 chrX 115146480 115146758 -61827382 + MER8 DNA MER2_type 3 239 0 407 323 12 66 chrX 115146758 115146823 -61827317 + L2 LINE L2 2887 2954 -360 22 70 0 0 chrX 115147126 115147169 -61826971 + AT_rich Low_complexity Low_complexity 1 43 0 786 136 76 0 chrX 115147416 115147534 -61826606 - FLAM_A SINE Alu -6 127 1 511 249 76 16 chrX 115147556 115147775 -61826365 - L1ME3A LINE L1 -194 5968 5744 1112 223 13 13 chrX 115147892 115148116 -61826024 - MER58A DNA MER1_type 0 224 1 208 282 36 150 chrX 115148464 115148744 -61825396 + L2 LINE L2 2881 3128 -144 2553 50 0 0 chrX 115148785 115149087 -61825053 + AluY SINE Alu 1 302 -9 342 250 44 37 chrX 115149631 115149767 -61824373 + MIR SINE MIR 80 216 -46 230 229 12 60 chrX 115149794 115149877 -61824263 + L2 LINE L2 3229 3307 -6 22 0 0 0 chrX 115150056 115150078 -61824062 + AT_rich Low_complexity Low_complexity 1 22 0 447 199 42 126 chrX 115150514 115150558 -61823582 - MER5B DNA MER1_type -3 175 129 1661 132 47 37 chrX 115150558 115150854 -61823286 - AluJo SINE Alu -13 299 1 447 199 42 126 chrX 115150854 115151000 -61823140 - MER5B DNA MER1_type -49 129 1 2309 108 0 10 chrX 115151020 115151326 -61822814 + AluSx SINE Alu 3 305 -7 2339 86 3 0 chrX 115151748 115152039 -61822101 + AluSp SINE Alu 1 292 -21 501 115 0 0 chrX 115152044 115152122 -61822018 + (TA)n Simple_repeat Simple_repeat 2 79 0 2473 69 0 10 chrX 115152417 115152722 -61821418 + AluY SINE Alu 1 302 -9 2089 122 44 0 chrX 115152749 115153043 -61821097 - AluSx SINE Alu -5 307 1 226 65 22 22 chrX 115153053 115153099 -61821041 + (TTTTTG)n Simple_repeat Simple_repeat 2 47 0 2074 125 0 0 chrX 115153824 115154111 -61820029 - AluSx SINE Alu -15 297 11 190 0 67 0 chrX 115154116 115154146 -61819994 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 1831 151 7 0 chrX 115154152 115154424 -61819716 - AluSx SINE Alu -38 274 1 1766 132 4 18 chrX 115154937 115155217 -61818923 + AluSx SINE Alu 30 305 -7 202 308 108 80 chrX 115155621 115155972 -61818168 + L2 LINE L2 2831 3191 -81 313 287 0 37 chrX 115156765 115156901 -61817239 + C-rich Low_complexity Low_complexity 6 136 0 213 284 0 30 chrX 115156940 115157007 -61817133 + C-rich Low_complexity Low_complexity 6 70 0 186 133 0 0 chrX 115157931 115157961 -61816179 + (CAG)n Simple_repeat Simple_repeat 1 30 0 180 0 0 0 chrX 115158163 115158183 -61815957 + (TCC)n Simple_repeat Simple_repeat 2 21 0 553 225 189 21 chrX 115159869 115160060 -61814080 + MIR SINE MIR 35 257 -5 2466 71 3 0 chrX 115161234 115161531 -61812609 + AluSp SINE Alu 1 298 -15 375 309 18 94 chrX 115161640 115161749 -61812391 + MIR SINE MIR 7 92 -170 820 167 0 36 chrX 115161749 115161887 -61812253 - FLAM_C SINE Alu 0 133 1 375 309 18 94 chrX 115161887 115162000 -61812140 + MIR SINE MIR 92 212 -50 213 340 150 0 chrX 115162067 115162167 -61811973 + MIR SINE MIR 122 236 -26 459 224 52 115 chrX 115162415 115162483 -61811657 - MIR SINE MIR -63 199 128 2366 96 0 0 chrX 115162483 115162785 -61811355 - AluSx SINE Alu -10 302 1 459 224 52 115 chrX 115162785 115162908 -61811232 - MIR SINE MIR -134 128 20 23 33 0 0 chrX 115163101 115163131 -61811009 + AT_rich Low_complexity Low_complexity 1 30 0 530 262 92 34 chrX 115164070 115164276 -61809864 + MIR SINE MIR 15 232 -30 180 0 0 0 chrX 115164679 115164699 -61809441 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 792 142 0 25 chrX 115164702 115164822 -61809318 - FLAM_C SINE Alu -25 118 2 27 0 0 0 chrX 115164956 115164983 -61809157 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chrX 115165343 115165371 -61808769 + AT_rich Low_complexity Low_complexity 1 28 0 1618 124 0 0 chrX 115165997 115166223 -61807917 + AluSx SINE Alu 1 226 -86 256 200 48 16 chrX 115166304 115166429 -61807711 + (TAAA)n Simple_repeat Simple_repeat 1 129 0 646 225 115 5 chrX 115166662 115166862 -61807278 - MER112 DNA MER1_type -38 222 1 1797 143 35 11 chrX 115166955 115167241 -61806899 + AluSx SINE Alu 11 303 -9 2008 128 30 0 chrX 115168877 115169173 -61804967 - AluSg SINE Alu -5 305 1 2319 115 0 0 chrX 115169581 115169893 -61804247 - AluSx SINE Alu 0 312 1 1778 169 17 20 chrX 115170160 115170360 -61803780 - AluJo SINE Alu -18 294 94 3419 75 18 16 chrX 115170360 115170803 -61803337 - MLT2A1 LTR ERVL 0 444 1 1778 169 17 20 chrX 115170803 115170897 -61803243 - AluJo SINE Alu -218 94 1 546 170 0 0 chrX 115170902 115170996 -61803144 - MER46A DNA MER2_type -142 94 1 23 33 0 0 chrX 115172027 115172057 -61802083 + AT_rich Low_complexity Low_complexity 1 30 0 985 136 18 12 chrX 115172057 115172226 -61801914 - L1PB1 LINE L1 -1 6150 5981 458 245 0 0 chrX 115174028 115174130 -61800010 - U13 snRNA snRNA -2 102 1 181 256 0 0 chrX 115174176 115174215 -61799925 + L2 LINE L2 3232 3270 -2 342 0 0 0 chrX 115174911 115174949 -61799191 + (TG)n Simple_repeat Simple_repeat 2 39 0 761 130 0 24 chrX 115175718 115175841 -61798299 + FLAM_A SINE Alu 18 137 -5 26 64 0 0 chrX 115176033 115176080 -61798060 + AT_rich Low_complexity Low_complexity 1 47 0 717 155 0 0 chrX 115176382 115176498 -61797642 - FLAM_C SINE Alu -17 116 1 2291 99 3 3 chrX 115176932 115177225 -61796915 - AluSx SINE Alu -17 295 3 739 192 8 0 chrX 115177643 115177763 -61796377 + FLAM_A SINE Alu 1 121 -12 304 349 19 0 chrX 115178824 115178930 -61795210 + MIR SINE MIR 8 115 -147 738 150 0 25 chrX 115181610 115181730 -61792410 - FLAM_C SINE Alu -15 118 2 310 329 145 27 chrX 115182019 115182384 -61791756 - L2 LINE L2 -1038 2276 1869 2336 99 0 10 chrX 115182710 115183022 -61791118 - AluSc SINE Alu 0 309 1 916 206 0 0 chrX 115183226 115183391 -61790749 - FRAM SINE Alu -6 170 6 1686 155 65 21 chrX 115184067 115184357 -61789783 - AluJo SINE Alu -9 303 1 2356 78 0 0 chrX 115184364 115184659 -61789481 - AluSg SINE Alu -15 295 1 202 278 124 21 chrX 115184767 115184864 -61789276 - L2 LINE L2 -188 3084 2978 270 321 181 29 chrX 115185107 115185450 -61788690 - L2 LINE L2 -619 2695 2301 973 68 0 0 chrX 115185548 115185666 -61788474 + AluJb SINE Alu 1 118 -194 180 311 16 66 chrX 115185672 115185794 -61788346 - L2 LINE L2 -1360 1954 1839 938 280 90 9 chrX 115186197 115186640 -61787500 - L1ME4a LINE L1 -195 5926 5448 2259 115 7 0 chrX 115186685 115186989 -61787151 + AluSx SINE Alu 1 306 -6 2145 114 3 0 chrX 115187114 115187403 -61786737 - AluSg SINE Alu -20 290 1 24 32 0 0 chrX 115187692 115187723 -61786417 + AT_rich Low_complexity Low_complexity 1 31 0 689 267 22 0 chrX 115189001 115189181 -61784959 + MIR SINE MIR 73 256 -6 2157 115 11 0 chrX 115189715 115190001 -61784139 - AluSg SINE Alu -21 289 1 2156 124 0 10 chrX 115190021 115190320 -61783820 - AluSx SINE Alu -16 296 1 1527 118 125 0 chrX 115190615 115190887 -61783253 + MER46B DNA MER2_type 1 181 -55 603 200 0 74 chrX 115190889 115191024 -61783116 + FLAM_C SINE Alu 1 125 -8 2256 105 7 0 chrX 115191089 115191385 -61782755 + AluSx SINE Alu 3 300 -12 27 0 0 0 chrX 115191451 115191478 -61782662 + AT_rich Low_complexity Low_complexity 1 27 0 3972 169 77 37 chrX 115195011 115196314 -61777826 - L1MB5 LINE L1 0 6410 5060 198 0 0 0 chrX 115196317 115196339 -61777801 + (TA)n Simple_repeat Simple_repeat 1 22 0 12735 40 5 2 chrX 115196341 115198753 -61775387 - L1PA5 LINE L1 -20 6134 3716 2061 72 0 0 chrX 115198750 115199028 -61775112 + L1P LINE L1 758 1035 -5111 * 4582 212 41 56 chrX 115199025 115199848 -61774292 - L1MB5 LINE L1 -1311 5071 4238 1736 179 10 3 chrX 115199848 115200156 -61773984 - AluJb SINE Alu -2 310 1 4582 212 41 56 chrX 115200156 115200780 -61773360 - L1MB5 LINE L1 -2144 4238 3607 1887 107 0 8 chrX 115200780 115201042 -61773098 - AluSc SINE Alu -2 307 48 4582 212 41 56 chrX 115201042 115201095 -61773045 - L1MB5 LINE L1 -2775 3607 3555 1751 159 20 27 chrX 115201095 115201391 -61772749 - AluJo SINE Alu -18 294 1 4582 212 41 56 chrX 115201391 115201485 -61772655 - L1MB5 LINE L1 -2827 3555 3498 1725 163 54 7 chrX 115201486 115201781 -61772359 - AluJo SINE Alu -3 309 1 2179 203 49 12 chrX 115201781 115202537 -61771603 - L1MB5 LINE L1 -3319 3063 2273 1421 148 112 74 chrX 115202547 115202888 -61771252 - MER34C-int LTR ERV1 -3354 1582 1256 2126 129 7 0 chrX 115202888 115203197 -61770943 - AluSx SINE Alu 0 312 2 1516 174 66 14 chrX 115203198 115203485 -61770655 - AluJo SINE Alu -10 302 1 1421 148 112 74 chrX 115203485 115203789 -61770351 - MER34C-int LTR ERV1 -3679 1257 883 236 228 35 0 chrX 115203823 115203880 -61770260 - LTR68 LTR ERV1 -286 454 396 2470 162 87 21 chrX 115203972 115204504 -61769636 - MER34C-int LTR ERV1 -4071 865 299 2730 134 20 67 chrX 115204552 115204631 -61769509 - LTR26B LTR ERV1 0 531 450 2298 100 0 3 chrX 115204631 115204932 -61769208 - AluSx SINE Alu -12 300 1 2730 134 20 67 chrX 115204932 115205120 -61769020 - LTR26B LTR ERV1 -81 450 255 1669 181 4 7 chrX 115205120 115205401 -61768739 + AluJo SINE Alu 14 293 -19 2730 134 20 67 chrX 115205401 115205703 -61768437 - LTR26B LTR ERV1 -276 255 1 324 226 55 103 chrX 115205716 115205862 -61768278 - MER34C-int LTR ERV1 -4823 1508 1370 294 289 0 0 chrX 115205942 115206018 -61768122 - MER34C-int LTR ERV1 -6160 641 566 329 248 47 65 chrX 115206115 115206329 -61767811 - MER34C-int LTR ERV1 -6119 212 3 720 110 84 39 chrX 115206336 115206443 -61767697 - MER34C LTR ERV1 -2 583 465 3109 153 54 2 chrX 115206443 115206965 -61767175 - MER44D DNA MER2_type 0 605 2 720 110 84 39 chrX 115206965 115207011 -61767129 - MER34C LTR ERV1 -120 465 423 748 198 11 92 chrX 115207013 115207088 -61767052 - L1MB5 LINE L1 -4100 2284 2204 726 180 0 23 chrX 115207088 115207216 -61766924 - FLAM_A SINE Alu -8 125 1 748 198 11 92 chrX 115207216 115207423 -61766717 - L1MB5 LINE L1 -4180 2204 2025 2228 102 7 0 chrX 115207615 115207908 -61766232 - AluSx SINE Alu -17 295 1 2290 100 0 0 chrX 115208055 115208345 -61765795 + AluSg SINE Alu 1 290 -20 23 33 0 0 chrX 115208608 115208638 -61765502 + AT_rich Low_complexity Low_complexity 1 30 0 2780 10 0 0 chrX 115208671 115208974 -61765166 - AluYa5 SINE Alu -8 303 1 2328 98 0 0 chrX 115209336 115209641 -61764499 - AluSx SINE Alu -7 305 1 1981 200 52 18 chrX 115209927 115210441 -61763699 + L1ME1 LINE L1 5618 6149 -17 796 286 103 18 chrX 115210635 115211307 -61762833 + L1ME3 LINE L1 5198 5924 -238 42 48 0 0 chrX 115211307 115211370 -61762770 + AT_rich Low_complexity Low_complexity 1 63 0 6830 93 27 1 chrX 115211404 115212496 -61761644 + L1MA1 LINE L1 5185 6302 0 775 219 74 43 chrX 115212497 115212822 -61761318 + L1M4 LINE L1 3331 3665 -2481 921 98 11 38 chrX 115212837 115213020 -61761120 + (GGAA)n Simple_repeat Simple_repeat 1 178 0 492 231 0 8 chrX 115213034 115213155 -61760985 + L1M4 LINE L1 3696 3815 -2331 1868 212 83 24 chrX 115213159 115213650 -61760490 - MLT2B1 LTR ERVL 0 520 1 829 88 18 231 chrX 115213653 115213926 -61760214 - Tigger1 DNA MER2_type 0 2418 2204 839 138 0 0 chrX 115213927 115214050 -61760090 - Tigger1 DNA MER2_type -2270 148 26 3651 219 55 59 chrX 115214064 115215349 -61758791 + L1M4 LINE L1 3820 5100 -1046 399 103 52 0 chrX 115215349 115215407 -61758733 + U7 snRNA snRNA 2 62 -1 3651 219 55 59 chrX 115215407 115215451 -61758689 + L1M4 LINE L1 5100 5143 -1003 634 161 8 8 chrX 115215452 115215582 -61758558 - L1MEc LINE L1 -4246 2150 2021 2069 140 0 0 chrX 115215582 115215882 -61758258 - AluJb SINE Alu -8 304 5 658 178 15 15 chrX 115215898 115216033 -61758107 - MSTC LTR MaLR -293 135 1 859 189 114 9 chrX 115216033 115216261 -61757879 - L1MEc LINE L1 -4459 1937 1686 226 300 98 25 chrX 115216409 115216578 -61757562 + MIR SINE MIR 20 198 -58 559 270 61 51 chrX 115216616 115216772 -61757368 + MIR SINE MIR 53 206 -56 2161 106 7 0 chrX 115216772 115217056 -61757084 + AluSx SINE Alu 1 286 -26 207 0 0 0 chrX 115217062 115217085 -61757055 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 559 270 61 51 chrX 115217085 115217117 -61757023 + MIR SINE MIR 210 250 -12 1802 145 6 69 chrX 115217615 115217796 -61756344 - AluJo SINE Alu -1 311 159 2368 77 7 0 chrX 115217796 115218093 -61756047 - AluSg SINE Alu -11 299 1 1802 145 6 69 chrX 115218093 115218243 -61755897 - AluJo SINE Alu -153 159 1 818 323 27 34 chrX 115218508 115218899 -61755241 - L2 LINE L2 -26 3246 2782 381 257 50 10 chrX 115218925 115219026 -61755114 + MIR SINE MIR 42 146 -62 1265 169 13 27 chrX 115219030 115219255 -61754885 + AluJo SINE Alu 1 222 -90 203 245 43 0 chrX 115219522 115219616 -61754524 + (TA)n Simple_repeat Simple_repeat 1 98 0 2017 138 7 0 chrX 115219695 115219993 -61754147 - AluSx SINE Alu -12 300 1 2502 62 7 0 chrX 115220366 115220672 -61753468 + AluSx SINE Alu 1 308 -4 320 302 127 0 chrX 115220801 115220927 -61753213 + MIR3 SINE MIR 19 160 -48 290 219 67 19 chrX 115221014 115221119 -61753021 + MER103 DNA DNA 6 115 -51 1779 97 0 0 chrX 115221269 115221495 -61752645 + AluSg/x SINE Alu 85 310 0 448 282 7 21 chrX 115221684 115221826 -61752314 - MIR SINE MIR -1 261 122 754 85 0 0 chrX 115221827 115221921 -61752219 + AluSq/x SINE Alu 43 136 -176 2258 108 0 35 chrX 115221922 115222238 -61751902 + AluSx SINE Alu 1 305 -7 373 224 61 10 chrX 115222244 115222342 -61751798 - MIR SINE MIR -128 134 32 236 244 0 0 chrX 115222368 115222413 -61751727 + MER94 DNA DNA 1 45 -89 2038 164 0 0 chrX 115222715 115223027 -61751113 - AluSx SINE Alu 0 312 1 821 162 15 0 chrX 115223090 115223226 -61750914 + AluJb SINE Alu 1 138 -174 1526 186 54 136 chrX 115223245 115223411 -61750729 + MER114 LTR ERV 1 179 -469 1466 189 0 57 chrX 115223411 115223712 -61750428 - AluJo SINE Alu -18 294 11 1526 186 54 136 chrX 115223712 115224250 -61749890 + MER114 LTR ERV 179 647 -1 1924 109 95 0 chrX 115224361 115224635 -61749505 - AluSx SINE Alu -11 301 2 243 0 0 0 chrX 115224635 115224662 -61749478 + (A)n Simple_repeat Simple_repeat 1 27 0 1317 207 4 22 chrX 115224662 115224937 -61749203 - AluJb SINE Alu -28 284 15 3833 110 22 62 chrX 115225192 115225378 -61748762 - MER49 LTR ERV1 -8 915 723 2381 49 0 11 chrX 115225378 115225665 -61748475 + AluY SINE Alu 17 300 -11 3833 110 22 62 chrX 115225665 115225798 -61748342 - MER49 LTR ERV1 -200 723 586 2211 106 0 0 chrX 115225798 115226108 -61748032 - AluSx SINE Alu 0 310 1 3833 110 22 62 chrX 115226108 115226420 -61747720 - MER49 LTR ERV1 -337 586 307 955 115 40 14 chrX 115226411 115226559 -61747581 + MER49 LTR ERV1 636 787 -136 * 1826 128 22 0 chrX 115226556 115226829 -61747311 - MER49 LTR ERV1 -644 279 1 1019 183 0 0 chrX 115227330 115227483 -61746657 - FRAM SINE Alu -11 155 3 204 40 0 0 chrX 115227763 115227788 -61746352 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 3770 40 0 2 chrX 115227789 115228219 -61745921 - L1PA8 LINE L1 -18 6154 5726 260 246 0 18 chrX 115228649 115228706 -61745434 + MER94 DNA DNA 78 133 -1 1543 179 35 25 chrX 115228734 115229038 -61745102 - AluJb SINE Alu 0 312 1 262 270 242 22 chrX 115229134 115229312 -61744828 + L2 LINE L2 1964 2180 -1134 644 311 140 12 chrX 115229505 115229590 -61744550 + LTR16A LTR ERVL 1 74 -376 2248 107 7 0 chrX 115229590 115229890 -61744250 + AluSg SINE Alu 1 302 -8 644 311 140 12 chrX 115229890 115230203 -61743937 + LTR16A LTR ERVL 74 450 0 207 263 0 50 chrX 115230504 115230584 -61743556 - MIR SINE MIR -30 232 157 214 267 23 35 chrX 115230664 115230750 -61743390 - MIR SINE MIR -3 259 175 2394 104 0 0 chrX 115230770 115231079 -61743061 - AluSq SINE Alu -4 309 1 298 344 16 8 chrX 115231314 115231436 -61742704 - MIR SINE MIR -131 131 9 347 186 0 0 chrX 115231764 115231834 -61742306 - L1MA10 LINE L1 0 6334 6265 1122 161 10 10 chrX 115233028 115233221 -61740919 - AluJo SINE Alu -119 193 1 360 225 12 0 chrX 115233222 115233302 -61740838 - L1MA8 LINE L1 -164 6127 6047 1967 110 40 17 chrX 115233474 115233774 -61740366 - AluSx SINE Alu -5 307 1 577 244 85 90 chrX 115233791 115234180 -61739960 - L1ME4a LINE L1 -14 6107 5721 2250 101 0 7 chrX 115234209 115234541 -61739599 + AluSx SINE Alu 3 332 0 1346 243 30 69 chrX 115235152 115235617 -61738523 - L2 LINE L2 0 3313 2867 2072 129 0 3 chrX 115235724 115236049 -61738091 + AluSx SINE Alu 1 324 0 1183 184 73 107 chrX 115236177 115236590 -61737550 - MLT1D LTR MaLR -104 401 3 2528 74 0 0 chrX 115236744 115237054 -61737086 - AluY SINE Alu -1 310 1 2340 112 0 0 chrX 115237054 115237366 -61736774 - AluSq SINE Alu -1 312 1 1134 293 77 82 chrX 115237437 115238018 -61736122 - L3 LINE CR1 -12 1565 988 1690 152 50 3 chrX 115238018 115238301 -61735839 - AluSg SINE Alu -14 296 1 1134 293 77 82 chrX 115238301 115238602 -61735538 - L3 LINE CR1 -589 988 687 496 242 88 50 chrX 115238832 115239014 -61735126 + MER5A DNA MER1_type 1 189 0 383 286 0 0 chrX 115239043 115239134 -61735006 + MER5B DNA MER1_type 1 91 -87 1221 80 7 0 chrX 115239134 115239307 -61734833 + AluSq SINE Alu 133 306 0 531 163 0 20 chrX 115239309 115239407 -61734733 + MER5B DNA MER1_type 83 178 0 1120 253 55 126 chrX 115239974 115240063 -61734077 - MLT1L LTR MaLR -1 614 520 2043 169 35 25 chrX 115240063 115240431 -61733709 - MLT1A2 LTR MaLR -2 372 1 1120 253 55 126 chrX 115240431 115240890 -61733250 - MLT1L LTR MaLR -95 520 1 282 344 172 37 chrX 115240916 115241457 -61732683 - L2 LINE L2 -414 2900 2287 479 258 0 47 chrX 115241505 115241612 -61732528 + MIR SINE MIR 6 108 -154 2318 112 0 0 chrX 115241612 115241915 -61732225 - AluSx SINE Alu -9 303 1 479 258 0 47 chrX 115241915 115241935 -61732205 + MIR SINE MIR 108 127 -135 195 296 0 19 chrX 115242034 115242088 -61732052 - MIR SINE MIR -86 122 70 2211 108 10 10 chrX 115242089 115242396 -61731744 + AluSq SINE Alu 1 307 -6 1569 12 0 0 chrX 115242536 115242758 -61731382 + SVA Other Other 1203 1424 0 269 314 75 6 chrX 115242877 115243036 -61731104 + L1MC4a LINE L1 5770 5939 -1869 1395 99 40 20 chrX 115243180 115243262 -61730878 - AluSx SINE Alu -106 206 127 232 26 26 26 chrX 115243262 115243300 -61730840 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1395 99 40 20 chrX 115243300 115243419 -61730721 - AluSx SINE Alu -185 127 1 22 70 0 0 chrX 115243425 115243468 -61730672 + AT_rich Low_complexity Low_complexity 1 43 0 2351 88 0 34 chrX 115243543 115243863 -61730277 - AluSx SINE Alu -3 309 1 807 154 81 13 chrX 115243931 115244080 -61730060 + MER5A DNA MER1_type 9 167 -22 200 273 0 30 chrX 115244317 115244383 -61729757 + GA-rich Low_complexity Low_complexity 3 66 0 2028 148 0 3 chrX 115244477 115244788 -61729352 - AluSx SINE Alu -2 310 1 932 171 0 12 chrX 115245635 115245805 -61728335 - FRAM SINE Alu -10 166 1 1925 150 7 0 chrX 115245831 115246117 -61728023 - AluJb SINE Alu -24 288 1 600 213 14 35 chrX 115246211 115246352 -61727788 + MER5B DNA MER1_type 38 175 -3 427 329 58 7 chrX 115246354 115246491 -61727649 - MIR3 SINE MIR -49 159 16 565 241 15 65 chrX 115247083 115247282 -61726858 + MER5A DNA MER1_type 1 189 0 240 353 60 9 chrX 115247554 115247670 -61726470 + MIR3 SINE MIR 82 203 -5 6827 51 81 0 chrX 115247886 115248935 -61725205 + L1PA8 LINE L1 5049 6172 0 192 77 0 0 chrX 115249235 115249261 -61724879 + (CCG)n Simple_repeat Simple_repeat 2 27 0 2380 80 0 0 chrX 115250382 115250671 -61723469 + AluSq SINE Alu 1 289 -24 183 42 0 0 chrX 115250674 115250698 -61723442 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1144 142 27 6 chrX 115250999 115251182 -61722958 + MER20 DNA MER1_type 33 219 0 2419 82 3 0 chrX 115251304 115251607 -61722533 + AluSq SINE Alu 2 305 -8 576 148 0 0 chrX 115251618 115251706 -61722434 + Charlie1 DNA MER1_type 104 191 -2570 659 172 67 0 chrX 115251711 115251845 -61722295 + Charlie1 DNA MER1_type 2619 2761 0 235 333 0 35 chrX 115251845 115251932 -61722208 - L3 LINE CR1 -44 1533 1450 232 222 42 69 chrX 115252647 115252719 -61721421 - L2 LINE L2 -10 3303 3234 973 240 31 90 chrX 115253231 115253402 -61720738 - L2 LINE L2 -14 3299 3157 2094 99 33 0 chrX 115253402 115253695 -61720445 + AluSq SINE Alu 1 302 0 973 240 31 90 chrX 115253695 115253876 -61720264 - L2 LINE L2 -156 3157 2967 247 274 111 51 chrX 115253956 115254073 -61720067 + L2 LINE L2 3140 3263 -9 181 304 0 0 chrX 115254082 115254128 -61720012 - L2 LINE L2 -52 3220 3175 314 303 10 10 chrX 115255604 115255703 -61718437 - MIR SINE MIR -159 103 5 1757 166 14 3 chrX 115255908 115256204 -61717936 - AluJb SINE Alu -13 299 1 382 165 24 24 chrX 115257212 115257297 -61716843 - LTR67 LTR ERVL -2 555 471 1553 214 63 39 chrX 115257302 115257460 -61716680 + L1ME3A LINE L1 5607 5760 -410 2213 123 0 9 chrX 115257460 115257776 -61716364 - AluSq SINE Alu 0 313 1 1553 214 63 39 chrX 115257776 115258029 -61716111 + L1ME3A LINE L1 5760 6028 -142 675 87 5 23 chrX 115258037 115258153 -61715987 + Tigger2a DNA MER2_type 2 116 -325 2174 101 28 0 chrX 115258160 115258446 -61715694 - AluSx SINE Alu -18 294 1 1311 122 34 10 chrX 115258447 115258652 -61715488 + Tigger2a DNA MER2_type 204 413 -31 312 188 158 20 chrX 115258652 115258753 -61715387 + L1ME3A LINE L1 6038 6152 -18 315 266 75 72 chrX 115258926 115259204 -61714936 - LTR67 LTR ERVL -261 296 18 336 176 0 0 chrX 115261490 115261558 -61712582 + (TA)n Simple_repeat Simple_repeat 1 68 0 33 56 0 0 chrX 115261613 115261667 -61712473 + AT_rich Low_complexity Low_complexity 1 54 0 1734 163 50 7 chrX 115262126 115262408 -61711732 + AluJb SINE Alu 3 296 -16 401 62 231 0 chrX 115262416 115262481 -61711659 - MADE1 DNA Mariner 0 80 1 284 143 0 0 chrX 115262485 115262534 -61711606 + MADE1 DNA Mariner 32 80 0 232 174 0 0 chrX 115263351 115263397 -61710743 + LTR66 LTR ERVL 397 442 -168 239 170 0 151 chrX 115263400 115263506 -61710634 - L1MC4 LINE L1 -1339 6703 6614 * 258 289 21 0 chrX 115263456 115263553 -61710587 + L1MC4 LINE L1 6612 6710 -1332 582 279 56 35 chrX 115263570 115263767 -61710373 - MIR SINE MIR -51 211 11 773 152 0 18 chrX 115263863 115263975 -61710165 - FLAM_A SINE Alu -32 110 1 442 226 0 57 chrX 115264104 115264210 -61709930 - Tigger7 DNA MER2_type -1 2586 2487 1624 181 0 4 chrX 115264215 115264480 -61709660 - Tigger7 DNA MER2_type -466 267 4 2317 99 0 0 chrX 115264615 115264917 -61709223 - AluSg SINE Alu -8 302 1 1795 156 6 25 chrX 115265591 115265905 -61708235 + AluJb SINE Alu 1 308 -4 239 339 64 77 chrX 115266087 115266462 -61707678 - L2 LINE L2 -387 2927 2558 2109 102 0 4 chrX 115266679 115266954 -61707186 + AluSx SINE Alu 1 274 -38 827 139 39 8 chrX 115266997 115267126 -61707014 + FLAM_C SINE Alu 1 133 0 2130 113 32 0 chrX 115267226 115267508 -61706632 + AluSx SINE Alu 1 291 -21 196 143 36 0 chrX 115267556 115267612 -61706528 + (TA)n Simple_repeat Simple_repeat 1 58 0 2374 104 3 0 chrX 115268803 115269112 -61705028 - AluSq SINE Alu -3 310 1 184 42 0 0 chrX 115270712 115270736 -61703404 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2257 73 0 7 chrX 115270736 115271016 -61703124 - AluY SINE Alu -29 282 3 2244 115 0 7 chrX 115271017 115271321 -61702819 - AluSx SINE Alu -10 302 1 283 237 66 0 chrX 115272567 115272643 -61701497 - MIR SINE MIR 0 262 182 1794 135 8 0 chrX 115274358 115274697 -61699443 - AluY SINE Alu 0 389 49 444 278 0 0 chrX 115274931 115275039 -61699101 + MIR SINE MIR 137 244 -18 206 180 202 11 chrX 115275430 115275519 -61698621 - L2 LINE L2 -646 2668 2563 1876 136 48 14 chrX 115276193 115276488 -61697652 - AluJb SINE Alu -7 305 1 1282 177 191 0 chrX 115278238 115278521 -61695619 - MER58B DNA MER1_type -4 337 1 311 181 49 21 chrX 115278714 115278858 -61695282 + (TA)n Simple_repeat Simple_repeat 2 149 0 230 267 0 0 chrX 115278882 115278942 -61695198 + (TA)n Simple_repeat Simple_repeat 1 60 0 360 0 0 0 chrX 115279712 115279752 -61694388 + (TG)n Simple_repeat Simple_repeat 1 40 0 2196 95 0 3 chrX 115280288 115280609 -61693531 + AluSq SINE Alu 1 320 0 224 233 0 0 chrX 115281112 115281155 -61692985 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 227 287 51 41 chrX 115282144 115282245 -61691895 - MER5A DNA MER1_type -17 161 69 219 36 0 0 chrX 115282245 115282273 -61691867 + (GA)n Simple_repeat Simple_repeat 1 28 0 378 0 0 0 chrX 115282273 115282315 -61691825 + (TG)n Simple_repeat Simple_repeat 2 43 0 236 242 45 0 chrX 115282698 115282764 -61691376 + MIR SINE MIR 65 133 -129 1937 154 0 16 chrX 115283286 115283598 -61690542 - AluSx SINE Alu -5 307 1 829 183 0 0 chrX 115285500 115285631 -61688509 - FLAM_A SINE Alu -2 131 1 411 343 36 72 chrX 115286008 115286479 -61687661 + L2 LINE L2 2730 3185 -87 618 225 140 15 chrX 115288946 115289146 -61684994 - MIR SINE MIR -6 256 32 341 245 54 68 chrX 115289206 115289353 -61684787 - L1MC4 LINE L1 -1284 6758 6614 303 333 0 0 chrX 115289275 115289365 -61684775 + L1MC4 LINE L1 6614 6703 -1339 * 629 246 126 9 chrX 115293247 115293462 -61680678 - MIR SINE MIR -14 248 9 2052 81 40 40 chrX 115294012 115294308 -61679832 - AluSx SINE Alu -9 303 8 1094 89 0 64 chrX 115294432 115294589 -61679551 - AluSq/x SINE Alu -166 147 1 2417 78 3 0 chrX 115294755 115295063 -61679077 + AluY SINE Alu 3 311 0 181 203 0 34 chrX 115295345 115295404 -61678736 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 346 312 74 83 chrX 115295404 115295490 -61678650 + L1ME4a LINE L1 4836 4921 -1225 1911 147 0 35 chrX 115295490 115295802 -61678338 + AluJo SINE Alu 1 301 -11 346 312 74 83 chrX 115295802 115296135 -61678005 + L1ME4a LINE L1 4921 5251 -895 251 284 104 38 chrX 115296203 115296295 -61677845 + L1ME4a LINE L1 5329 5414 -707 1413 121 39 22 chrX 115296295 115296527 -61677613 - MER46A DNA MER2_type 0 236 1 251 284 104 38 chrX 115296527 115296617 -61677523 + L1ME4a LINE L1 5414 5523 -598 253 353 26 0 chrX 115296638 115296794 -61677346 + L1ME4a LINE L1 5724 5883 -238 252 246 0 0 chrX 115297072 115297129 -61677011 + L1ME4a LINE L1 5978 6034 -87 330 300 183 8 chrX 115298007 115298127 -61676013 + MIR SINE MIR 5 145 -117 431 289 0 10 chrX 115298344 115298448 -61675692 - MIR SINE MIR -140 122 20 691 149 236 7 chrX 115298727 115298875 -61675265 - MER5A DNA MER1_type -5 184 3 2394 77 0 13 chrX 115300207 115300520 -61673620 + AluY SINE Alu 3 311 0 2462 77 0 3 chrX 115300808 115301120 -61673020 + AluSq SINE Alu 1 311 -2 182 286 0 0 chrX 115301209 115301258 -61672882 + L2 LINE L2 3261 3309 -4 1889 152 0 23 chrX 115301933 115302236 -61671904 + AluJb SINE Alu 1 296 -16 295 300 39 31 chrX 115302236 115302366 -61671774 - L2 LINE L2 -172 3141 3011 1792 144 3 23 chrX 115302432 115302738 -61671402 + AluJb SINE Alu 1 300 -12 673 118 49 7 chrX 115302751 115302895 -61671245 + GA-rich Low_complexity Low_complexity 3 152 0 987 269 37 127 chrX 115302899 115303064 -61671076 - L2 LINE L2 -411 2903 2725 254 50 25 0 chrX 115303064 115303104 -61671036 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 987 269 37 127 chrX 115303104 115303559 -61670581 - L2 LINE L2 -589 2725 2379 781 171 8 0 chrX 115303559 115303688 -61670452 - FLAM_C SINE Alu -3 130 1 987 269 37 127 chrX 115303688 115303928 -61670212 - L2 LINE L2 -935 2379 2119 318 215 38 0 chrX 115304213 115304292 -61669848 + L1MEc LINE L1 1974 2055 -4341 308 346 72 7 chrX 115304304 115304457 -61669683 + L1M4 LINE L1 3593 3755 -2391 420 269 70 74 chrX 115304575 115304832 -61669308 + MLT1L LTR MaLR 139 394 -221 2320 165 17 12 chrX 115304847 115305260 -61668880 - LTR52 LTR ERVL -3 418 4 5983 256 66 61 chrX 115305263 115307789 -61666351 - LTR52-int LTR ERVL 0 3556 1020 215 160 20 20 chrX 115307829 115307879 -61666261 + CT-rich Low_complexity Low_complexity 3 52 0 480 35 0 0 chrX 115307879 115307937 -61666203 + (TG)n Simple_repeat Simple_repeat 1 58 0 7867 117 47 7 chrX 115307968 115309220 -61664920 + THE1C-int LTR MaLR 279 1580 0 2045 163 19 19 chrX 115309220 115309595 -61664545 + THE1C LTR MaLR 1 375 0 3003 161 17 11 chrX 115309639 115310166 -61663974 - LTR52-int LTR ERVL -3024 532 3 1633 211 17 17 chrX 115310174 115310576 -61663564 - LTR52 LTR ERVL -19 402 1 455 311 47 0 chrX 115310576 115310767 -61663373 + MLT1L LTR MaLR 416 615 0 557 303 102 24 chrX 115310770 115311156 -61662984 + L1M4 LINE L1 3773 4187 -1959 1085 258 12 13 chrX 115311357 115311760 -61662380 + MLT2F LTR ERVL 1 450 -213 259 139 0 0 chrX 115311758 115311801 -61662339 + MLT2F LTR ERVL 621 663 0 * 5542 239 76 54 chrX 115311833 115313529 -61660611 + L1MEc LINE L1 35 1692 -4704 240 111 0 0 chrX 115313529 115313565 -61660575 + (TA)n Simple_repeat Simple_repeat 2 37 0 5542 239 76 54 chrX 115313565 115314080 -61660060 + L1MEc LINE L1 1692 2302 -4094 1799 184 0 0 chrX 115314080 115314374 -61659766 - AluJb SINE Alu -18 294 1 5542 239 76 54 chrX 115314374 115314470 -61659670 + L1MEc LINE L1 2302 2394 -4002 568 211 0 0 chrX 115314468 115314601 -61659539 + L1M4 LINE L1 5073 5205 -941 * 518 286 0 6 chrX 115314702 115314877 -61659263 + L1MEc LINE L1 3271 3444 -2771 2287 148 0 3 chrX 115314892 115315230 -61658910 + MER1B DNA MER1_type 1 337 0 1221 175 166 46 chrX 115315275 115315601 -61658539 + MLT1A1 LTR MaLR 1 365 0 259 241 17 0 chrX 115315622 115315680 -61658460 - LTR16A LTR ERVL 0 450 392 439 266 70 6 chrX 115315807 115315965 -61658175 - LTR16A LTR ERVL -260 190 23 1545 282 48 10 chrX 115316401 115316897 -61657243 + REP3 LTR ERV 1 515 -47 1060 209 38 0 chrX 115317119 115317330 -61656810 + MER20 DNA MER1_type 1 219 0 713 189 0 23 chrX 115317486 115317618 -61656522 - FLAM_C SINE Alu -12 131 3 1042 351 48 15 chrX 115317619 115318373 -61655767 - ERVL LTR ERVL -741 4786 3958 1725 163 245 37 chrX 115318423 115318938 -61655202 + LTR29 LTR ERV1 1 622 0 2576 269 48 16 chrX 115319018 115320103 -61654037 + L1MEc LINE L1 938 2057 -4339 502 209 0 0 chrX 115320103 115320189 -61653951 + MER20 DNA MER1_type 1 86 -133 4040 171 55 69 chrX 115320193 115321016 -61653124 + MER21B LTR ERV1 1 811 -52 1877 179 7 0 chrX 115321044 115321351 -61652789 - AluJo SINE Alu -1 311 3 651 198 32 0 chrX 115321375 115321501 -61652639 + MER20 DNA MER1_type 89 218 -1 559 166 83 51 chrX 115321533 115321690 -61652450 + L1M4 LINE L1 4614 4775 -1371 * 2064 163 23 4 chrX 115321688 115322314 -61651826 + L1M4 LINE L1 4986 5621 -557 979 174 104 124 chrX 115322348 115322431 -61651709 - MLT1A1 LTR MaLR 0 365 282 2160 109 3 0 chrX 115322431 115322738 -61651402 + AluSp SINE Alu 1 308 0 979 174 104 124 chrX 115322738 115322952 -61651188 - MLT1A1 LTR MaLR -83 282 73 2028 173 98 7 chrX 115322988 115323415 -61650725 - L1MB7 LINE L1 -279 5905 5440 3089 155 19 13 chrX 115323415 115323949 -61650191 - L1MA9 LINE L1 0 6312 5776 299 174 22 43 chrX 115323959 115324051 -61650089 + L1MC4 LINE L1 6614 6703 -1339 198 0 0 0 chrX 115324062 115324084 -61650056 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 1834 157 12 30 chrX 115324084 115324421 -61649719 - L1MA9 LINE L1 -514 5798 5468 * 1987 189 23 0 chrX 115324416 115324803 -61649337 + L1 LINE L1 4626 5021 -1125 1922 172 21 0 chrX 115324800 115325208 -61648932 - L1MB7 LINE L1 -735 5443 5023 * 843 227 0 0 chrX 115325212 115325375 -61648765 - FRAM SINE Alu -11 165 3 1226 179 88 20 chrX 115325378 115325719 -61648421 - L1MB7 LINE L1 -1397 4749 4386 834 167 7 28 chrX 115325763 115325907 -61648233 - FLAM_C SINE Alu -1 142 2 200 122 49 24 chrX 115325985 115326026 -61648114 + CT-rich Low_complexity Low_complexity 2 43 0 921 280 12 12 chrX 115326176 115326426 -61647714 + MLT1K LTR MaLR 2 251 -337 4566 118 64 16 chrX 115326452 115326925 -61647215 - L1MA4A LINE L1 -7 6296 5772 342 0 0 0 chrX 115326925 115326963 -61647177 + (TG)n Simple_repeat Simple_repeat 1 38 0 4566 118 64 16 chrX 115326963 115327234 -61646906 - L1MA4A LINE L1 -531 5772 5516 43672 52 1 1 chrX 115327236 115333191 -61640949 + L1PA5 LINE L1 13 5964 -190 811 269 94 36 chrX 115333202 115333510 -61640630 + MLT1K LTR MaLR 261 586 -2 741 232 148 111 chrX 115333747 115334235 -61639905 + LTR33 LTR ERVL 1 506 -15 347 257 82 78 chrX 115336427 115336633 -61637507 + L2 LINE L2 2287 2493 -821 253 304 107 96 chrX 115336635 115336694 -61637446 + L2 LINE L2 2652 2709 -604 2342 105 0 0 chrX 115336694 115337007 -61637133 + AluSq SINE Alu 1 313 0 253 304 107 96 chrX 115337007 115337272 -61636868 + L2 LINE L2 2709 2982 -331 1024 144 59 0 chrX 115338209 115338362 -61635778 - AluJb SINE Alu -15 297 136 502 312 0 8 chrX 115339370 115339495 -61634645 + MIR3 SINE MIR 55 178 -30 256 330 44 22 chrX 115341126 115341217 -61632923 + L2 LINE L2 3173 3265 -7 251 91 0 23 chrX 115341788 115341832 -61632308 + (CA)n Simple_repeat Simple_repeat 2 44 0 667 246 0 0 chrX 115342505 115342623 -61631517 - FLAM_A SINE Alu -15 118 1 580 102 69 0 chrX 115343580 115343915 -61630225 + (TA)n Simple_repeat Simple_repeat 1 358 0 1358 105 0 43 chrX 115344068 115344277 -61629863 + HUERS-P1 LTR ERV1 1 200 -6063 1023 137 0 0 chrX 115344277 115344423 -61629717 + LTR8 LTR ERV1 546 691 0 300 143 0 0 chrX 115344499 115344555 -61629585 + (GGA)n Simple_repeat Simple_repeat 1 56 0 461 269 172 0 chrX 115345733 115345867 -61628273 - MER5A DNA MER1_type -7 182 26 377 310 140 15 chrX 115345882 115346079 -61628061 + MIR SINE MIR 16 237 -25 2124 116 0 0 chrX 115346477 115346770 -61627370 + AluY SINE Alu 1 293 -18 390 250 77 0 chrX 115348359 115348463 -61625677 + MIR SINE MIR 67 178 -84 528 271 153 0 chrX 115348509 115348686 -61625454 + MIR SINE MIR 58 261 -1 798 231 6 11 chrX 115349779 115349961 -61624179 + MIR SINE MIR 20 200 -62 456 275 11 49 chrX 115351194 115351423 -61622717 - MIR SINE MIR -40 222 8 396 138 0 0 chrX 115351766 115351831 -61622309 + (TCC)n Simple_repeat Simple_repeat 1 65 0 222 318 0 15 chrX 115352598 115352664 -61621476 + L2 LINE L2 3206 3270 -2 322 339 0 32 chrX 115353239 115353363 -61620777 - MIR3 SINE MIR -84 124 5 1979 132 3 7 chrX 115353440 115353727 -61620413 + AluJb SINE Alu 14 299 -13 203 184 0 0 chrX 115354775 115354813 -61619327 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 385 295 98 40 chrX 115355574 115355747 -61618393 + MIR3 SINE MIR 20 202 -6 605 242 54 74 chrX 115408071 115408368 -61565772 - L1ME4a LINE L1 -104 6017 5727 980 47 94 0 chrX 115409686 115409813 -61564327 + MER85 DNA T2_type 1 139 0 276 267 78 11 chrX 115410321 115410411 -61563729 - L2 LINE L2 -5 3267 3172 2317 78 0 36 chrX 115410601 115410907 -61563233 - AluSg SINE Alu -15 295 1 848 282 31 9 chrX 115410921 115411148 -61562992 - MIR SINE MIR 0 262 31 2324 86 7 0 chrX 115411594 115411895 -61562245 + AluSp SINE Alu 1 303 -10 207 0 0 0 chrX 115414455 115414478 -61559662 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2133 103 0 0 chrX 115414480 115414762 -61559378 - AluSx SINE Alu -30 282 1 409 230 70 10 chrX 115414817 115414917 -61559223 - L2 LINE L2 0 3313 3208 228 200 100 0 chrX 115415214 115415264 -61558876 + MIR SINE MIR 94 148 -60 348 357 52 24 chrX 115415373 115415583 -61558557 - L2 LINE L2 -674 2640 2425 180 0 0 0 chrX 115422771 115422791 -61551349 + (CAT)n Simple_repeat Simple_repeat 1 20 0 226 171 57 0 chrX 115424401 115424471 -61549669 + (TA)n Simple_repeat Simple_repeat 2 75 0 206 222 0 32 chrX 115425913 115425976 -61548164 + (CCG)n Simple_repeat Simple_repeat 1 61 0 316 304 99 52 chrX 115426542 115426733 -61547407 - L2 LINE L2 0 3272 3073 29 47 0 0 chrX 115426789 115426832 -61547308 + AT_rich Low_complexity Low_complexity 1 43 0 216 274 0 0 chrX 115426866 115426917 -61547223 + L2 LINE L2 3222 3272 0 315 113 129 16 chrX 115428306 115428368 -61545772 + AluSp SINE Alu 35 103 -200 491 236 180 17 chrX 115428667 115428845 -61545295 + MIR SINE MIR 3 209 -53 180 231 0 0 chrX 115429089 115429128 -61545012 + MIR SINE MIR 218 256 -6 564 220 120 33 chrX 115429307 115429548 -61544592 + HAL1b LINE L1 535 796 -552 907 262 55 78 chrX 115429571 115429935 -61544205 - L2 LINE L2 -8 3305 2949 2223 218 67 24 chrX 115429935 115430486 -61543654 - MER90 LTR ERV1 0 575 1 907 262 55 78 chrX 115430486 115430506 -61543634 - L2 LINE L2 -364 2949 2930 2379 103 0 0 chrX 115430522 115430834 -61543306 + AluSx SINE Alu 1 312 0 252 263 95 21 chrX 115430835 115430930 -61543210 + HAL1b LINE L1 800 901 -447 383 115 52 83 chrX 115430939 115431035 -61543105 - MER53 DNA DNA -94 95 3 201 228 18 35 chrX 115431170 115431227 -61542913 + (CATA)n Simple_repeat Simple_repeat 3 58 0 320 280 140 67 chrX 115432309 115432459 -61541681 + L2 LINE L2 3110 3270 -2 227 273 0 36 chrX 115432773 115432828 -61541312 - MIR SINE MIR -16 246 194 721 236 186 14 chrX 115432937 115433157 -61540983 + MIR SINE MIR 3 260 -2 2743 198 40 10 chrX 115433447 115433951 -61540189 - LTR53 LTR ERVL 0 519 1 1880 181 3 0 chrX 115434962 115435271 -61538869 - AluJb SINE Alu -2 310 1 387 0 0 0 chrX 115435325 115435368 -61538772 + (CA)n Simple_repeat Simple_repeat 2 44 0 276 196 43 98 chrX 115435376 115435468 -61538672 - MER4D LTR ERV1 -74 829 743 1816 169 7 3 chrX 115435718 115436014 -61538126 - AluJb SINE Alu -1 311 15 591 193 193 50 chrX 115436635 115436837 -61537303 - MIR SINE MIR 0 262 32 210 233 267 26 chrX 115436840 115436956 -61537184 + MER91A DNA MER1_type 18 161 -35 279 303 0 0 chrX 115437215 115437291 -61536849 + L2 LINE L2 2698 2773 -541 365 162 0 14 chrX 115437369 115437443 -61536697 + CT-rich Low_complexity Low_complexity 1 73 0 189 0 0 0 chrX 115437444 115437465 -61536675 + (CCTG)n Simple_repeat Simple_repeat 2 22 0 1025 149 23 0 chrX 115437474 115437648 -61536492 - AluSg/x SINE Alu 0 310 133 365 243 118 30 chrX 115438062 115438366 -61535774 - L1MC4 LINE L1 0 8042 7595 278 143 196 0 chrX 115438366 115438422 -61535718 + L2 LINE L2 3206 3272 0 645 194 111 83 chrX 115438600 115438803 -61535337 - L1MC5 LINE L1 -31 7930 7715 1843 141 84 34 chrX 115438803 115439158 -61534982 - THE1C LTR MaLR -2 373 1 645 194 111 83 chrX 115439158 115439242 -61534898 - L1MC5 LINE L1 -246 7715 7635 486 127 0 25 chrX 115440008 115440087 -61534053 + Tigger2 DNA MER2_type 1 77 -2641 933 184 0 7 chrX 115440115 115440267 -61533873 - MER8 DNA MER2_type -62 177 27 3789 94 45 58 chrX 115440974 115441578 -61532562 - MER4A LTR ERV1 0 600 5 12792 116 75 39 chrX 115441591 115443083 -61531057 - MER4A-int LTR ERV1 0 6598 5161 2505 52 0 30 chrX 115443083 115443388 -61530752 + AluY SINE Alu 1 296 -15 12792 116 75 39 chrX 115443388 115445226 -61528914 - MER4A-int LTR ERV1 -1437 5161 3390 2090 119 3 22 chrX 115445226 115445544 -61528596 - AluJb SINE Alu 0 312 1 12792 116 75 39 chrX 115445544 115446576 -61527564 - MER4A-int LTR ERV1 -3208 3390 998 1654 108 36 12 chrX 115446574 115446824 -61527316 - MER4A-int LTR ERV1 -6314 444 189 * 1239 266 36 11 chrX 115446836 115447164 -61526976 - MER4A-int LTR ERV1 -4170 2161 1865 3191 108 181 21 chrX 115447193 115447850 -61526290 - MER4A-int LTR ERV1 -5770 828 1 2567 125 3 42 chrX 115447853 115447913 -61526227 - MER4A LTR ERV1 0 664 603 2441 138 212 69 chrX 115447913 115448450 -61525690 - LTR18B LTR ERVL 0 614 1 2567 125 3 42 chrX 115448450 115449007 -61525133 - MER4A LTR ERV1 -61 603 3 519 221 0 0 chrX 115449265 115449360 -61524780 + MER21B LTR ERV1 1 95 -768 2668 212 44 61 chrX 115449398 115449596 -61524544 + MER21B LTR ERV1 98 298 -633 1577 181 14 28 chrX 115449596 115449883 -61524257 + AluJo SINE Alu 6 288 -24 2668 212 44 61 chrX 115449883 115449910 -61524230 + MER21B LTR ERV1 298 324 -607 1429 92 16 76 chrX 115449910 115449957 -61524183 - L1MA6 LINE L1 -3 6297 6249 396 0 0 0 chrX 115449957 115450001 -61524139 + (TG)n Simple_repeat Simple_repeat 2 45 0 1618 196 0 11 chrX 115450005 115450290 -61523850 - AluJo SINE Alu -30 282 1 1429 92 16 76 chrX 115450290 115450487 -61523653 - L1MA6 LINE L1 -54 6246 6063 2668 212 44 61 chrX 115450487 115450990 -61523150 + MER21B LTR ERV1 324 906 -25 1625 171 79 0 chrX 115450992 115451272 -61522868 - AluJb SINE Alu -10 302 1 252 191 34 11 chrX 115451315 115451404 -61522736 + (TCTA)n Simple_repeat Simple_repeat 1 91 0 681 230 8 0 chrX 115451404 115451530 -61522610 - FLAM_A SINE Alu -6 127 1 3250 101 41 9 chrX 115452010 115452475 -61521665 + LTR15 LTR ERV1 1 480 -13 4122 130 169 155 chrX 115452521 115453781 -61520359 + MER52C LTR ERV1 1 1278 0 262 31 0 0 chrX 115455058 115455090 -61519050 - L1PA8 LINE L1 -12 6160 6129 2238 67 3 7 chrX 115455363 115455672 -61518468 - AluY SINE Alu 0 308 1 1256 126 0 0 chrX 115455675 115455849 -61518291 - AluSg/x SINE Alu -14 298 125 2052 150 3 0 chrX 115456169 115456469 -61517671 - AluSx SINE Alu -11 301 1 189 191 0 43 chrX 115456938 115456985 -61517155 + MIR SINE MIR 215 259 -3 12088 126 26 61 chrX 115457472 115458826 -61515314 - L1MA4 LINE L1 -5 6477 5078 767 155 8 47 chrX 115458826 115458955 -61515185 - FLAM_A SINE Alu -9 124 1 12088 126 26 61 chrX 115458955 115460346 -61513794 - L1MA4 LINE L1 -1404 5078 3640 258 32 0 0 chrX 115460346 115460377 -61513763 + (TTG)n Simple_repeat Simple_repeat 3 33 0 12088 126 26 61 chrX 115460377 115460915 -61513225 - L1MA4 LINE L1 -2842 3640 3315 1444 191 68 7 chrX 115460915 115461209 -61512931 - AluJo SINE Alu 0 312 1 12088 126 26 61 chrX 115461209 115461311 -61512829 - L1MA4 LINE L1 -3167 3315 3211 3096 83 22 2 chrX 115461324 115461735 -61512405 - L1MA2 LINE L1 0 6304 5886 5610 185 45 30 chrX 115461784 115463533 -61510607 - L1MA4 LINE L1 -4065 1263 14 652 336 76 18 chrX 115463548 115463997 -61510143 - L2 LINE L2 -856 2458 1984 2375 103 0 0 chrX 115464363 115464675 -61509465 + AluSx SINE Alu 1 312 0 579 110 68 76 chrX 115466120 115466238 -61507902 - LTR18B LTR ERVL -441 173 57 1648 172 88 0 chrX 115466351 115466668 -61507472 - AluJb SINE Alu 0 312 1 301 188 138 0 chrX 115467285 115467365 -61506775 - MLT2E LTR ERVL -9 619 529 3962 96 68 30 chrX 115467367 115467484 -61506656 - LTR18B LTR ERVL 0 614 503 2373 56 0 0 chrX 115467484 115467804 -61506336 - AluY SINE Alu 0 320 1 3962 96 68 30 chrX 115467804 115468277 -61505863 - LTR18B LTR ERVL -111 503 1 2959 151 3 9 chrX 115468480 115469144 -61504996 - HERVL18 LTR ERVL -2556 3491 2718 1343 154 18 2 chrX 115469141 115469413 -61504727 - HERVL18 LTR ERVL -3595 2452 2119 * 1198 188 8 16 chrX 115469412 115469774 -61504366 - HERVL18 LTR ERVL -4237 1810 1388 * 783 254 12 0 chrX 115469802 115469975 -61504165 - HERVL18 LTR ERVL -5381 666 492 * 1542 182 3 24 chrX 115469952 115470248 -61503892 - HERVL18 LTR ERVL -5739 308 19 4206 107 51 8 chrX 115470269 115470858 -61503282 - LTR18B LTR ERVL 0 614 1 1471 260 81 62 chrX 115470864 115471410 -61502730 - MLT2F LTR ERVL -103 560 5 2949 123 5 19 chrX 115472223 115472654 -61501486 + MSTC LTR MaLR 4 428 0 619 291 59 0 chrX 115472928 115473131 -61501009 - MIR SINE MIR 0 262 48 305 291 94 0 chrX 115473627 115473744 -61500396 + MIR3 SINE MIR 81 208 0 510 328 100 40 chrX 115476554 115477286 -61496854 - L2 LINE L2 0 3272 2459 963 161 21 21 chrX 115477287 115477473 -61496667 - MLT1A2 LTR MaLR 0 374 189 191 188 21 0 chrX 115477493 115477541 -61496599 + GA-rich Low_complexity Low_complexity 2 50 0 2369 92 0 22 chrX 115477556 115477873 -61496267 - AluSx SINE Alu -2 310 1 606 133 72 94 chrX 115477873 115478048 -61496092 - MLT1A2 LTR MaLR -215 175 5 1766 128 181 35 chrX 115478118 115478322 -61495818 - MSTA LTR MaLR 0 428 255 2527 73 0 0 chrX 115478322 115478622 -61495518 - AluSg SINE Alu -10 300 1 1766 128 181 35 chrX 115478622 115478760 -61495380 - MSTA LTR MaLR -173 255 36 3557 167 34 16 chrX 115480969 115481639 -61492501 - MER76 LTR ERV -2 686 5 2349 126 57 32 chrX 115482160 115482597 -61491543 + LTR7 LTR ERV1 1 448 -2 588 274 75 15 chrX 115482632 115482871 -61491269 - MIR SINE MIR -10 252 5 5400 79 12 1 chrX 115482884 115483568 -61490572 + LTR8 LTR ERV1 1 691 0 1824 158 0 0 chrX 115483931 115484203 -61489937 + AluJb SINE Alu 1 272 -40 4985 120 8 3 chrX 115484205 115484928 -61489212 + LTR8A LTR ERV1 1 727 0 369 277 30 18 chrX 115484956 115485122 -61489018 - MIR SINE MIR 0 262 95 209 278 183 0 chrX 115485295 115485410 -61488730 + MIR SINE MIR 114 249 -13 45119 38 5 1 chrX 115486809 115492938 -61481202 - L1PA4 LINE L1 0 6155 4 2259 162 95 0 chrX 115492950 115493351 -61480789 + MER74C LTR ERVL 1 439 -21 933 202 115 5 chrX 115493484 115493692 -61480448 + MER66B LTR ERV1 256 486 0 689 125 0 19 chrX 115494296 115494400 -61479740 - FRAM SINE Alu -15 161 60 1841 145 25 14 chrX 115494786 115495069 -61479071 - AluJo SINE Alu -26 286 1 309 269 39 0 chrX 115495180 115495258 -61478882 + MIR SINE MIR 69 149 -113 2099 135 26 32 chrX 115495742 115496119 -61478021 + THE1C LTR MaLR 1 375 0 1920 169 0 0 chrX 115498512 115498802 -61475338 + AluJb SINE Alu 1 290 -22 294 173 0 19 chrX 115498887 115498939 -61475201 + MLT1E3 LTR MaLR 18 68 -556 255 354 0 0 chrX 115499180 115499276 -61474864 + MIR3 SINE MIR 83 178 -30 732 219 79 0 chrX 115499724 115499888 -61474252 + LTR16C LTR ERVL 110 286 -205 1802 142 180 14 chrX 115499907 115500273 -61473867 - MSTA LTR MaLR 0 428 2 872 239 29 0 chrX 115500273 115500478 -61473662 + MER90 LTR ERV1 15 225 -350 6023 234 51 45 chrX 115500479 115501776 -61472364 + L1M4b LINE L1 3 1290 -5669 1735 171 0 17 chrX 115501776 115502068 -61472072 + AluJo SINE Alu 1 287 -25 6023 234 51 45 chrX 115502068 115502104 -61472036 + L1M4b LINE L1 1290 1324 -5635 2250 93 26 54 chrX 115502104 115502490 -61471650 + THE1C LTR MaLR 1 375 0 6023 234 51 45 chrX 115502490 115502624 -61471516 + L1M4b LINE L1 1324 1456 -5503 853 152 0 8 chrX 115502624 115502756 -61471384 + FLAM_C SINE Alu 1 131 -2 6023 234 51 45 chrX 115502756 115503608 -61470532 + L1M4b LINE L1 1456 2362 -4597 2766 90 36 10 chrX 115503761 115504151 -61469989 + MLT2A1 LTR ERVL 1 400 -44 335 147 0 49 chrX 115504160 115504303 -61469837 + (TA)n Simple_repeat Simple_repeat 2 137 0 416 138 18 18 chrX 115504361 115504470 -61469670 + (TA)n Simple_repeat Simple_repeat 2 110 0 309 113 0 38 chrX 115504484 115504537 -61469603 + MLT2A1 LTR ERVL 462 512 -8 259 247 99 0 chrX 115504639 115504720 -61469420 + MIR3 SINE MIR 82 170 -38 2590 128 27 2 chrX 115504768 115505181 -61468959 - MER95 LTR ERV 0 431 9 532 313 57 0 chrX 115505337 115505529 -61468611 - L2 LINE L2 -279 3034 2832 8755 175 79 29 chrX 115505531 115507237 -61466903 + L1M1 LINE L1 14 1805 -5760 1574 94 0 5 chrX 115507237 115507439 -61466701 + AluY SINE Alu 1 201 -110 420 159 0 0 chrX 115507440 115507503 -61466637 + MER57-int LTR ERV1 610 672 -6865 * 3521 117 41 37 chrX 115507500 115508817 -61465323 + MER57-int LTR ERV1 288 3783 -4033 1360 130 31 0 chrX 115508817 115509040 -61465100 + MER57B LTR ERV1 205 434 0 831 301 33 27 chrX 115509178 115509513 -61464627 + MER102b DNA MER1_type 4 340 -1 483 226 55 84 chrX 115509515 115509790 -61464350 - L1MC5 LINE L1 -34 7927 7661 254 325 46 33 chrX 115510077 115510108 -61464032 - MIR3 SINE MIR -97 111 82 2325 143 60 27 chrX 115510108 115510522 -61463618 + MSTA LTR MaLR 1 428 0 254 325 46 33 chrX 115510522 115510640 -61463500 - MIR3 SINE MIR -126 82 9 416 297 87 1 chrX 115510697 115510906 -61463234 - MIR SINE MIR 0 262 38 215 284 80 11 chrX 115510944 115511032 -61463108 + MIR SINE MIR 21 114 -148 228 67 0 0 chrX 115511783 115511813 -61462327 + (A)n Simple_repeat Simple_repeat 1 30 0 313 211 67 11 chrX 115512241 115512331 -61461809 - L1MB4 LINE L1 0 6180 6086 29 101 0 0 chrX 115515951 115516050 -61458090 + AT_rich Low_complexity Low_complexity 1 99 0 2258 87 0 0 chrX 115516549 115516838 -61457302 + AluSx SINE Alu 9 297 -15 258 224 0 26 chrX 115518230 115518306 -61455834 + G-rich Low_complexity Low_complexity 5 78 0 572 110 70 0 chrX 115518633 115518733 -61455407 - AluSc SINE Alu -1 308 202 366 229 34 25 chrX 115518874 115518992 -61455148 + (GGGTG)n Simple_repeat Simple_repeat 4 122 0 1319 132 0 0 chrX 115519023 115519212 -61454928 - AluSx SINE Alu -123 189 1 320 231 11 22 chrX 115519655 115519746 -61454394 + ORSL DNA AcHobo 178 267 -8 403 269 66 48 chrX 115519898 115520065 -61454075 + MIR SINE MIR 33 202 -60 3387 88 56 13 chrX 115520343 115520811 -61453329 - LTR15 LTR ERV1 -4 489 2 65981 84 9 6 chrX 115520813 115523475 -61450665 - HERV15 LTR ERV1 -1 8734 6081 2313 78 0 23 chrX 115523475 115523781 -61450359 - AluY SINE Alu -12 299 1 65981 84 9 6 chrX 115523781 115529828 -61444312 - HERV15 LTR ERV1 -2654 6081 1 3499 88 31 20 chrX 115529828 115530316 -61443824 - LTR15 LTR ERV1 0 493 1 2256 261 23 15 chrX 115530384 115531124 -61443016 - LTR10C-int LTR ERV1 -1532 5117 2653 3947 93 26 6 chrX 115531311 115531935 -61442205 - LTR10C-int LTR ERV1 -4359 2537 1902 186 222 0 0 chrX 115531982 115532036 -61442104 + CT-rich Low_complexity Low_complexity 1 54 0 267 188 177 29 chrX 115532655 115532793 -61441347 - LTR10C-int LTR ERV1 -5930 719 502 897 226 29 57 chrX 115532793 115533072 -61441068 - LTR10C-int LTR ERV1 -6362 287 17 5050 53 8 0 chrX 115533090 115533676 -61440464 - LTR10C LTR ERV1 0 591 1 1507 245 39 0 chrX 115533679 115534172 -61439968 + L1 LINE L1 2801 3312 -2834 207 0 0 0 chrX 115534175 115534198 -61439942 + (A)n Simple_repeat Simple_repeat 1 23 0 6074 145 14 33 chrX 115534198 115535612 -61438528 + L1PA16 LINE L1 4784 6157 -9 625 235 20 15 chrX 115535620 115535816 -61438324 + L1 LINE L1 3287 3483 -2663 1593 232 53 88 chrX 115535850 115536481 -61437659 - LTR9B LTR ERV1 -43 601 7 409 185 0 0 chrX 115536649 115536730 -61437410 - MER77 LTR ERV1 -58 547 467 943 140 0 7 chrX 115537141 115537284 -61436856 - MLT1A1 LTR MaLR -223 142 1 5551 166 101 65 chrX 115537284 115537442 -61436698 - BaEV-int LTR ERV1 -2919 2017 1866 2233 89 0 0 chrX 115537442 115537750 -61436390 + AluY SINE Alu 1 308 0 5551 166 101 65 chrX 115537750 115538070 -61436070 - BaEV-int LTR ERV1 -3070 1866 1559 483 18 0 0 chrX 115538070 115538126 -61436014 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1803 149 3 28 chrX 115538128 115538416 -61435724 - AluSx SINE Alu -31 281 1 5551 166 101 65 chrX 115538416 115539363 -61434777 - BaEV-int LTR ERV1 -3377 1559 535 1117 211 162 49 chrX 115539364 115539851 -61434289 + LTR36 LTR ERV1 1 542 -69 320 145 0 16 chrX 115539851 115539913 -61434227 + (TTTC)n Simple_repeat Simple_repeat 2 62 0 2121 141 0 3 chrX 115539916 115540229 -61433911 - AluSx SINE Alu 0 312 1 368 191 71 0 chrX 115540229 115540313 -61433827 + LTR36 LTR ERV1 520 609 -2 569 310 7 66 chrX 115540377 115540648 -61433492 + LTR36-int LTR ERV1 110 364 -1422 898 263 42 31 chrX 115540904 115541196 -61432944 + LTR36-int LTR ERV1 97 1555 -2730 3739 158 72 85 chrX 115541236 115541530 -61432610 + LTR36-int LTR ERV1 786 1082 -3550 279 0 0 0 chrX 115541530 115541561 -61432579 + (TA)n Simple_repeat Simple_repeat 1 31 0 3739 158 72 85 chrX 115541561 115541874 -61432266 + LTR36-int LTR ERV1 1082 1398 -3234 469 217 0 0 chrX 115541874 115541957 -61432183 + AluSq/x SINE Alu 46 128 -185 3739 158 72 85 chrX 115541957 115542442 -61431698 + LTR36-int LTR ERV1 1398 1888 -2744 2179 125 0 10 chrX 115542442 115542745 -61431395 + AluSx SINE Alu 1 300 -12 3739 158 72 85 chrX 115542745 115542881 -61431259 + LTR36-int LTR ERV1 1888 2024 -2608 1702 198 3 0 chrX 115542881 115543166 -61430974 + AluSx SINE Alu 1 289 -23 228 67 0 0 chrX 115543166 115543196 -61430944 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 3739 158 72 85 chrX 115543203 115544077 -61430063 + LTR36-int LTR ERV1 2024 4308 -324 963 185 47 64 chrX 115544174 115544604 -61429536 + LTR36-int LTR ERV1 3731 4175 -2156 22 88 0 0 chrX 115544631 115544688 -61429452 + AT_rich Low_complexity Low_complexity 1 57 0 2939 178 221 96 chrX 115544783 115545689 -61428451 + LTR28 LTR ERV1 1 1019 -1 832 155 11 105 chrX 115545690 115545871 -61428269 + LTR36-int LTR ERV1 3786 3949 -4171 647 215 111 0 chrX 115546073 115546217 -61427923 + LTR36-int LTR ERV1 5984 6143 -615 295 171 200 0 chrX 115546210 115546280 -61427860 + LTR36-int LTR ERV1 6376 6459 -299 * 1291 131 53 86 chrX 115546285 115546530 -61427610 + LTR36-int LTR ERV1 6858 7094 -1026 1277 145 8 40 chrX 115546540 115546788 -61427352 + MER4D LTR ERV1 1 240 -632 1283 210 5 0 chrX 115546795 115547014 -61427126 + MER49 LTR ERV1 501 720 -203 561 342 37 64 chrX 115547150 115547559 -61426581 + LTR36-int LTR ERV1 6638 7035 -87 381 240 77 0 chrX 115547645 115547740 -61426400 + LTR36 LTR ERV1 52 154 -457 3844 90 3 160 chrX 115547740 115548492 -61425648 + MER51A LTR ERV1 1 634 0 876 245 84 29 chrX 115548504 115548906 -61425234 + LTR36 LTR ERV1 134 611 0 1418 180 19 0 chrX 115548916 115549172 -61424968 - MER31A-int LTR ERV1 -4402 534 274 1354 121 0 71 chrX 115549176 115549400 -61424740 + AluJb SINE Alu 85 292 -20 942 190 36 125 chrX 115549440 115549745 -61424395 - MER31A-int LTR ERV1 -4644 292 15 2013 174 31 69 chrX 115549803 115550293 -61423847 - MER31A LTR ERV1 -14 471 1 228 276 92 0 chrX 115550293 115550369 -61423771 - L2 LINE L2 -58 3214 3132 708 148 0 0 chrX 115550370 115550471 -61423669 + FLAM_A SINE Alu 22 122 -20 235 100 71 0 chrX 115550489 115550559 -61423581 + (TA)n Simple_repeat Simple_repeat 2 76 0 2548 160 28 20 chrX 115551343 115551772 -61422368 - LOR1b LTR ERV1 0 461 26 2426 122 0 20 chrX 115551772 115552116 -61422024 + MER1B DNA MER1_type 1 337 0 2548 160 28 20 chrX 115552116 115552143 -61421997 - LOR1b LTR ERV1 -435 26 1 230 231 31 0 chrX 115552256 115552321 -61421819 + (TA)n Simple_repeat Simple_repeat 1 67 0 633 174 84 7 chrX 115552458 115552613 -61421527 - MER53 DNA DNA 0 189 23 1687 26 5 0 chrX 115552626 115552815 -61421325 + L1PA4 LINE L1 5961 6150 -5 728 290 33 12 chrX 115552912 115553246 -61420894 - HAL1b LINE L1 -29 1319 979 1251 284 9 9 chrX 115553672 115554010 -61420130 + MER102b DNA MER1_type 1 338 -3 700 172 39 89 chrX 115554048 115554251 -61419889 - L1MC5 LINE L1 -60 7901 7709 389 282 30 8 chrX 115554338 115554469 -61419671 - MIR SINE MIR 0 262 129 234 219 21 10 chrX 115554492 115554588 -61419552 + (TA)n Simple_repeat Simple_repeat 1 97 0 327 209 122 0 chrX 115555132 115555247 -61418893 + MER96B DNA MER1_type? 50 178 -239 467 198 10 21 chrX 115556734 115556830 -61417310 + ORSL DNA AcHobo 181 275 0 28 0 0 0 chrX 115557234 115557262 -61416878 + AT_rich Low_complexity Low_complexity 1 28 0 536 251 41 41 chrX 115557353 115557524 -61416616 + MIR SINE MIR 22 192 -70 553 305 73 19 chrX 115557914 115558173 -61415967 - L2 LINE L2 -570 2744 2472 1345 189 78 31 chrX 115558188 115558731 -61415409 + LTR36 LTR ERV1 1 611 0 449 288 8 0 chrX 115558734 115558859 -61415281 - MIR SINE MIR -61 201 76 218 161 18 36 chrX 115558941 115558997 -61415143 + CT-rich Low_complexity Low_complexity 3 57 0 40 37 0 0 chrX 115559246 115559300 -61414840 + AT_rich Low_complexity Low_complexity 1 54 0 865 183 18 30 chrX 115559440 115559604 -61414536 - FRAM SINE Alu -4 162 1 24 0 0 0 chrX 115559797 115559821 -61414319 + AT_rich Low_complexity Low_complexity 1 24 0 504 125 0 62 chrX 115560412 115560604 -61413536 + (CCCCCA)n Simple_repeat Simple_repeat 1 180 0 254 174 31 71 chrX 115560610 115560708 -61413432 + C-rich Low_complexity Low_complexity 2 95 0 2390 137 8 16 chrX 115561478 115561859 -61412281 - L1MB2 LINE L1 -10 6161 5784 1744 151 22 9 chrX 115561867 115562108 -61412032 - L1MB2 LINE L1 -637 5543 5293 186 43 0 0 chrX 115562108 115562131 -61412009 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1744 151 22 9 chrX 115562131 115562317 -61411823 - L1MB2 LINE L1 -887 5293 5111 195 69 0 0 chrX 115562326 115562355 -61411785 + (TTG)n Simple_repeat Simple_repeat 1 29 0 418 194 0 0 chrX 115562373 115562440 -61411700 - AluSp SINE Alu -111 202 136 22 0 0 0 chrX 115562448 115562470 -61411670 + AT_rich Low_complexity Low_complexity 1 22 0 320 96 5 287 chrX 115562518 115562585 -61411555 - MER96B DNA MER1_type? -238 179 95 1770 172 0 25 chrX 115562585 115562905 -61411235 - AluJb SINE Alu 0 312 1 320 96 5 287 chrX 115562905 115562955 -61411185 - MER96B DNA MER1_type? -322 95 33 1695 143 11 24 chrX 115562955 115563269 -61410871 + AluJb SINE Alu 1 310 0 320 96 5 287 chrX 115563269 115563288 -61410852 - MER96B DNA MER1_type? -384 33 104 1922 120 46 11 chrX 115563288 115563571 -61410569 + AluSg SINE Alu 1 293 -17 320 96 5 287 chrX 115563571 115563619 -61410521 - MER96B DNA MER1_type? -312 105 45 398 145 69 13 chrX 115564136 115564295 -61409845 + (TA)n Simple_repeat Simple_repeat 2 169 0 1698 173 11 3 chrX 115566782 115567115 -61407025 + AluJo SINE Alu 1 335 0 1891 130 56 7 chrX 115567685 115567969 -61406171 + AluSg1 SINE Alu 1 298 -11 5118 145 59 13 chrX 115568743 115569606 -61404534 + MER4D LTR ERV1 1 903 0 4919 128 65 4 chrX 115570658 115571452 -61402688 - L1PA14 LINE L1 0 6161 5319 7209 51 12 0 chrX 115571452 115572670 -61401470 - L1PA7 LINE L1 -11 6143 4915 1201 77 0 18 chrX 115572670 115572839 -61401301 + L1P LINE L1 4408 4573 -1573 6793 135 158 73 chrX 115572839 115573497 -61400643 - MER4B-int LTR ERV1 -4762 1836 1235 411 21 0 0 chrX 115573497 115573545 -61400595 + (CA)n Simple_repeat Simple_repeat 2 49 0 6793 135 158 73 chrX 115573545 115573622 -61400518 - MER4B-int LTR ERV1 -5363 1235 1166 2158 108 14 0 chrX 115573622 115573909 -61400231 + AluSx SINE Alu 1 291 -21 6793 135 158 73 chrX 115573909 115574864 -61399276 - MER4B-int LTR ERV1 -5432 1166 1 805 104 9 0 chrX 115574867 115574973 -61399167 - MER4B LTR ERV1 0 610 504 1624 230 67 35 chrX 115574976 115575205 -61398935 - LTR2 LTR ERV1 0 449 229 186 43 0 0 chrX 115575205 115575228 -61398912 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1624 230 67 35 chrX 115575228 115575433 -61398707 - LTR2 LTR ERV1 -220 229 1 5493 110 7 0 chrX 115575433 115576189 -61397951 - Harlequin LTR ERV1 -1 6895 6135 * 20803 65 15 1 chrX 115576180 115578723 -61395417 - Harlequin LTR ERV1 -1827 5069 2491 1956 119 95 0 chrX 115579719 115580004 -61394136 + AluSx SINE Alu 1 312 0 3140 133 72 67 chrX 115580060 115580713 -61393427 - LTR1 LTR ERV1 -114 671 16 201 250 0 0 chrX 115581197 115581241 -61392899 + L2 LINE L2 3267 3310 -3 2033 135 7 10 chrX 115581286 115581590 -61392550 - AluSx SINE Alu -9 303 1 1915 160 0 3 chrX 115581593 115581886 -61392254 - AluJb SINE Alu -20 292 1 1050 150 0 0 chrX 115582016 115582169 -61391971 + FRAM SINE Alu 1 153 -23 683 179 8 22 chrX 115582174 115582308 -61391832 + FLAM_C SINE Alu 1 132 -11 2361 162 39 7 chrX 115582381 115582795 -61391345 + MSTB1 LTR MaLR 6 432 0 247 330 10 0 chrX 115582798 115582898 -61391242 + MIR SINE MIR 75 175 -87 2207 129 0 0 chrX 115583063 115583365 -61390775 + AluSx SINE Alu 1 302 -10 29 0 0 0 chrX 115583365 115583394 -61390746 + AT_rich Low_complexity Low_complexity 1 29 0 225 339 26 35 chrX 115583812 115583927 -61390213 + MIR SINE MIR 137 250 -12 21 0 0 0 chrX 115584035 115584056 -61390084 + AT_rich Low_complexity Low_complexity 1 21 0 1815 109 0 0 chrX 115584359 115584615 -61389525 - L1PB1 LINE L1 0 6151 5896 2433 66 0 28 chrX 115584850 115585169 -61388971 + AluY SINE Alu 1 310 -1 1469 210 149 50 chrX 115586088 115586644 -61387496 + LTR36 LTR ERV1 1 611 0 2305 65 4 0 chrX 115587219 115587497 -61386643 - AluY SINE Alu -32 279 1 3247 107 38 8 chrX 115587972 115588451 -61385689 + LTR15 LTR ERV1 1 493 0 5429 94 77 13 chrX 115588451 115589584 -61384556 + HERV15 LTR ERV1 1 1298 -7437 * 48865 84 9 5 chrX 115589565 115593301 -61380839 + HERV15 LTR ERV1 2313 6083 -2652 2326 79 0 23 chrX 115593301 115593606 -61380534 + AluY SINE Alu 1 298 -13 48865 84 9 5 chrX 115593606 115596268 -61377872 + HERV15 LTR ERV1 6083 8734 -1 3219 88 56 13 chrX 115596270 115596738 -61377402 + LTR15 LTR ERV1 2 489 -4 403 269 66 48 chrX 115597016 115597183 -61376957 - MIR SINE MIR -60 202 33 320 231 11 22 chrX 115597335 115597426 -61376714 - ORSL DNA AcHobo -8 267 178 1319 132 0 0 chrX 115597869 115598058 -61376082 + AluSx SINE Alu 1 189 -123 343 220 17 51 chrX 115598089 115598207 -61375933 + (CACCC)n Simple_repeat Simple_repeat 4 117 0 521 148 69 0 chrX 115598348 115598449 -61375691 + AluSc SINE Alu 202 309 0 258 224 0 26 chrX 115598769 115598845 -61375295 + C-rich Low_complexity Low_complexity 5 78 0 2228 90 0 0 chrX 115600237 115600526 -61373614 - AluSx SINE Alu -15 297 9 29 101 0 0 chrX 115601025 115601124 -61373016 + AT_rich Low_complexity Low_complexity 1 99 0 313 211 67 11 chrX 115604744 115604834 -61369306 + L1MB4 LINE L1 6086 6180 0 237 65 0 0 chrX 115605262 115605293 -61368847 + (T)n Simple_repeat Simple_repeat 1 31 0 215 284 80 11 chrX 115606044 115606132 -61368008 - MIR SINE MIR -148 114 21 416 297 87 1 chrX 115606170 115606379 -61367761 + MIR SINE MIR 38 262 0 265 321 53 40 chrX 115606436 115606554 -61367586 + MIR3 SINE MIR 9 128 -105 2325 143 60 27 chrX 115606554 115606968 -61367172 - MSTA LTR MaLR 0 428 1 265 321 53 40 chrX 115606968 115606999 -61367141 + MIR3 SINE MIR 128 157 -76 483 226 55 84 chrX 115607286 115607561 -61366579 + L1MC5 LINE L1 7661 7927 -34 852 299 33 27 chrX 115607563 115607898 -61366242 - MER102b DNA MER1_type -1 340 4 1387 126 31 0 chrX 115608036 115608259 -61365881 - MER57B LTR ERV1 0 434 205 3504 122 41 35 chrX 115608259 115609576 -61364564 - MER57-int LTR ERV1 -4033 3783 288 420 159 0 0 chrX 115609573 115609636 -61364504 - MER57-int LTR ERV1 -6865 672 610 * 1574 94 0 5 chrX 115609637 115609839 -61364301 - AluY SINE Alu -110 201 1 8797 174 79 29 chrX 115609839 115611545 -61362595 - L1M1 LINE L1 -5760 1805 14 532 313 57 0 chrX 115611547 115611739 -61362401 + L2 LINE L2 2832 3034 -279 2570 131 27 2 chrX 115611895 115612308 -61361832 + MER95 LTR ERV 9 431 0 259 247 99 0 chrX 115612356 115612437 -61361703 - MIR3 SINE MIR -38 170 82 285 127 4 37 chrX 115612539 115612611 -61361529 - MLT2A1 LTR ERVL -8 445 399 458 134 7 54 chrX 115612612 115612915 -61361225 + (TA)n Simple_repeat Simple_repeat 1 288 0 2766 90 36 10 chrX 115612924 115613314 -61360826 - MLT2A1 LTR ERVL -44 400 1 6021 234 54 41 chrX 115613467 115614319 -61359821 - L1M4c LINE L1 -4597 2362 1522 853 152 0 8 chrX 115614319 115614451 -61359689 - FLAM_C SINE Alu -2 131 1 6021 234 54 41 chrX 115614451 115614585 -61359555 - L1M4c LINE L1 -5437 1522 1391 2250 93 26 54 chrX 115614585 115614971 -61359169 - THE1C LTR MaLR 0 375 1 6021 234 54 41 chrX 115614971 115615007 -61359133 - L1M4c LINE L1 -5568 1391 1357 1729 171 0 20 chrX 115615007 115615300 -61358840 - AluJo SINE Alu -25 287 1 6021 234 54 41 chrX 115615300 115616597 -61357543 - L1M4c LINE L1 -5602 1357 3 872 239 29 0 chrX 115616598 115616803 -61357337 - MER90 LTR ERV1 -350 225 15 1817 139 180 14 chrX 115616803 115617169 -61356971 + MSTA LTR MaLR 2 428 0 732 219 79 0 chrX 115617188 115617352 -61356788 - LTR16C LTR ERVL -205 286 110 255 354 0 0 chrX 115617800 115617896 -61356244 - MIR3 SINE MIR -30 178 83 294 173 0 19 chrX 115618137 115618189 -61355951 - MLT1E3 LTR MaLR -556 68 18 1936 166 0 0 chrX 115618274 115618564 -61355576 - AluJb SINE Alu -22 290 1 2099 135 26 32 chrX 115620958 115621335 -61352805 - THE1C LTR MaLR 0 375 1 309 269 39 0 chrX 115621819 115621897 -61352243 - MIR SINE MIR -113 149 69 1841 145 25 14 chrX 115622008 115622291 -61351849 + AluJo SINE Alu 1 286 -26 681 126 0 19 chrX 115622677 115622780 -61351360 + FRAM SINE Alu 60 160 -16 933 202 115 5 chrX 115623387 115623595 -61350545 - MER66B LTR ERV1 0 486 256 2259 162 95 0 chrX 115623728 115624129 -61350011 - MER74C LTR ERVL -21 439 1 44965 37 7 1 chrX 115624141 115630256 -61343884 + L1PA4 LINE L1 4 6155 0 209 278 183 0 chrX 115631655 115631770 -61342370 - MIR SINE MIR -13 249 114 369 277 30 18 chrX 115631943 115632109 -61342031 + MIR SINE MIR 95 262 0 4980 120 8 3 chrX 115632137 115632860 -61341280 - LTR8A LTR ERV1 0 727 1 1824 158 0 0 chrX 115632862 115633134 -61341006 - AluJb SINE Alu -40 272 1 5391 80 12 1 chrX 115633497 115634181 -61339959 - LTR8 LTR ERV1 0 691 1 588 274 75 15 chrX 115634194 115634433 -61339707 + MIR SINE MIR 5 252 -10 2349 126 57 32 chrX 115634468 115634905 -61339235 - LTR7 LTR ERV1 -2 448 1 3563 172 30 16 chrX 115635426 115636099 -61338041 + MER76 LTR ERV 5 686 -2 687 174 189 0 chrX 115638308 115638440 -61335700 + MSTA LTR MaLR 36 192 -236 1468 103 0 0 chrX 115638458 115638643 -61335497 - AluSg SINE Alu -125 185 1 2186 159 71 38 chrX 115638654 115639157 -61334983 - MER4A-int LTR ERV1 -3615 2331 1846 2287 110 3 10 chrX 115639157 115639466 -61334674 + AluSp SINE Alu 1 307 -6 2186 159 71 38 chrX 115639466 115639719 -61334421 - MER4A-int LTR ERV1 -4100 1846 889 328 135 0 19 chrX 115639727 115639779 -61334361 - LTR49 LTR ERV1 -282 313 263 3287 133 130 27 chrX 115639839 115640363 -61333777 - MER4A-int LTR ERV1 -5786 812 135 3772 59 22 26 chrX 115640363 115640855 -61333285 + LTR2B LTR ERV1 1 490 0 3287 133 130 27 chrX 115640855 115641006 -61333134 - MER4A-int LTR ERV1 -6463 135 1 2438 139 122 94 chrX 115641009 115641655 -61332485 - MER4A LTR ERV1 0 664 1 2027 181 37 147 chrX 115641655 115641738 -61332402 - MLT1L-int LTR MaLR -264 1107 1017 1986 140 3 23 chrX 115641738 115642045 -61332095 + AluSx SINE Alu 1 301 -11 2027 181 37 147 chrX 115642045 115642629 -61331511 - MLT1L-int LTR MaLR -354 1017 513 3050 168 112 24 chrX 115642633 115643356 -61330784 - LTR1B LTR ERV1 0 785 1 306 29 0 0 chrX 115643359 115643394 -61330746 - MLT1L-int LTR MaLR -862 509 475 625 108 0 0 chrX 115643397 115643480 -61330660 - MER4A LTR ERV1 -418 246 164 1133 191 349 6 chrX 115643482 115643832 -61330308 - MLT1L-int LTR MaLR -901 470 1 1862 173 17 45 chrX 115643832 115644236 -61329904 - MLT2C1 LTR ERVL 0 397 5 279 0 0 0 chrX 115644383 115644414 -61329726 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 597 164 0 0 chrX 115646301 115646411 -61327729 - L1MA9 LINE L1 0 6312 6203 2434 165 13 8 chrX 115646420 115646950 -61327190 + L1M2 LINE L1 5157 5687 -625 766 234 42 21 chrX 115647021 115647213 -61326927 + MER20 DNA MER1_type 1 196 -23 27 0 0 0 chrX 115647533 115647560 -61326580 + AT_rich Low_complexity Low_complexity 1 27 0 1521 123 32 0 chrX 115647570 115647821 -61326319 - L1MA7 LINE L1 -5 6286 6028 3713 205 34 14 chrX 115647829 115649046 -61325094 - L1ME LINE L1 -454 5708 4497 2390 85 3 0 chrX 115649213 115649506 -61324634 + AluSp SINE Alu 1 294 -19 21 57 0 0 chrX 115649526 115649561 -61324579 + AT_rich Low_complexity Low_complexity 1 35 0 238 250 104 52 chrX 115649561 115649657 -61324483 - MLT1L LTR MaLR -91 524 424 4008 146 74 52 chrX 115650309 115651695 -61322445 + pTR5 LTR ERV1 743 2438 0 1409 202 72 58 chrX 115651731 115652110 -61322030 - L1 LINE L1 -744 5402 5013 1701 175 24 0 chrX 115652110 115652401 -61321739 + AluJb SINE Alu 6 303 -9 1409 202 72 58 chrX 115652401 115652507 -61321633 - L1 LINE L1 -1133 5013 4910 995 167 0 0 chrX 115652506 115652675 -61321465 + L1P4 LINE L1 5448 5617 -545 * 1474 125 5 0 chrX 115652675 115652883 -61321257 + AluJo SINE Alu 86 294 -18 345 189 53 0 chrX 115652896 115652991 -61321149 + L1M4 LINE L1 2432 2531 -3615 1302 137 25 0 chrX 115653003 115653200 -61320940 + L1P4 LINE L1 5604 5805 -361 325 278 103 16 chrX 115653600 115653726 -61320414 - MIR3 SINE MIR -15 193 57 413 264 98 21 chrX 115653769 115653962 -61320178 + MIR SINE MIR 46 253 -9 279 79 0 0 chrX 115655254 115655292 -61318848 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 820 154 8 0 chrX 115655294 115655417 -61318723 - FRAM SINE Alu -30 146 23 37 0 0 0 chrX 115655490 115655527 -61318613 + AT_rich Low_complexity Low_complexity 1 37 0 748 139 41 0 chrX 115655527 115655649 -61318491 + L1PA16 LINE L1 6023 6149 -17 2081 110 27 3 chrX 115655656 115655923 -61318217 + AluSq SINE Alu 1 277 -36 489 17 0 0 chrX 115655923 115655981 -61318159 + (CATA)n Simple_repeat Simple_repeat 2 59 0 2081 110 27 3 chrX 115655981 115656012 -61318128 + AluSq SINE Alu 277 306 -7 1516 181 3 42 chrX 115656265 115656574 -61317566 + AluJo SINE Alu 2 298 -14 303 258 36 62 chrX 115657100 115657294 -61316846 - L1MC4 LINE L1 -9 8033 7845 366 177 101 0 chrX 115658146 115658225 -61315915 + L1 LINE L1 5113 5199 -947 677 274 15 26 chrX 115658384 115658621 -61315519 + MIR SINE MIR 27 262 0 708 219 39 22 chrX 115658622 115658800 -61315340 - MIR SINE MIR -63 199 19 21 0 0 0 chrX 115659490 115659511 -61314629 + AT_rich Low_complexity Low_complexity 1 21 0 1416 196 13 19 chrX 115659513 115659825 -61314315 - AluJo SINE Alu 0 312 3 477 22 0 174 chrX 115659843 115659935 -61314205 - AluJ/FRAM SINE Alu -14 298 223 218 263 26 0 chrX 115660064 115660140 -61314000 + GA-rich Low_complexity Low_complexity 3 80 0 613 56 22 0 chrX 115661000 115661090 -61313050 + (TC)n Simple_repeat Simple_repeat 2 93 0 180 0 0 0 chrX 115661092 115661112 -61313028 + (CA)n Simple_repeat Simple_repeat 1 20 0 222 286 0 0 chrX 115661494 115661550 -61312590 + CT-rich Low_complexity Low_complexity 1 56 0 349 152 20 50 chrX 115662250 115662349 -61311791 + MER96B DNA MER1_type? 241 336 -81 1348 192 49 8 chrX 115662359 115662625 -61311515 + AluJo SINE Alu 11 287 -25 274 89 18 18 chrX 115662626 115662682 -61311458 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2259 97 3 7 chrX 115662735 115663034 -61311106 + AluSg SINE Alu 5 302 -8 2394 88 0 0 chrX 115664204 115664511 -61309629 - AluY SINE Alu -4 307 1 1666 166 58 0 chrX 115664988 115665265 -61308875 + AluSx SINE Alu 3 295 -17 3622 183 82 101 chrX 115665735 115666336 -61307804 - L1MCb LINE L1 -4547 2017 1406 1378 158 158 0 chrX 115666336 115666596 -61307544 - AluJo SINE Alu -1 301 1 3622 183 82 101 chrX 115666596 115666915 -61307225 - L1MCb LINE L1 -5158 1406 1083 1732 174 10 3 chrX 115666915 115667203 -61306937 - AluJb SINE Alu -22 290 1 3622 183 82 101 chrX 115667203 115667289 -61306851 - L1MCb LINE L1 -5481 1083 997 826 141 7 22 chrX 115667289 115667424 -61306716 + FLAM_C SINE Alu 1 133 0 3622 183 82 101 chrX 115667424 115668260 -61305880 - L1MCb LINE L1 -5567 997 138 821 154 23 0 chrX 115669537 115669667 -61304473 + AluJo SINE Alu 3 135 -177 2538 47 3 3 chrX 115669682 115669981 -61304159 + AluY SINE Alu 1 299 -12 2436 144 41 106 chrX 115670486 115671031 -61303109 + MER51A LTR ERV1 1 250 -127 1607 168 32 7 chrX 115671145 115671555 -61302585 + L1MA4A LINE L1 5799 6280 -23 736 183 0 8 chrX 115671564 115671679 -61302461 + FLAM_A SINE Alu 17 132 -179 2173 141 0 0 chrX 115671679 115671978 -61302162 - AluSx SINE Alu -13 299 1 2462 101 8 8 chrX 115672073 115672428 -61301712 - THE1A LTR MaLR 0 355 1 283 270 0 30 chrX 115672807 115672907 -61301233 - MIR SINE MIR -111 151 55 558 294 9 28 chrX 115673267 115673485 -61300655 + MIR SINE MIR 49 262 0 679 253 16 22 chrX 115673486 115673668 -61300472 - MIR SINE MIR -63 199 19 248 299 8 34 chrX 115673744 115673861 -61300279 - MER113 DNA MER1_type? -407 114 1 300 219 12 24 chrX 115674193 115674275 -61299865 - ORSL DNA AcHobo -7 268 188 305 169 0 52 chrX 115674370 115674447 -61299693 - AluJo SINE Alu 0 302 230 3139 122 190 0 chrX 115674447 115674978 -61299162 + MER51A LTR ERV1 1 632 -2 1236 173 8 30 chrX 115674980 115675217 -61298923 - AluJo SINE Alu -79 233 2 375 109 0 174 chrX 115675234 115675326 -61298814 - AluJ/FRAM SINE Alu -9 293 218 384 22 0 0 chrX 115676379 115676424 -61297716 + (CA)n Simple_repeat Simple_repeat 1 45 0 591 112 0 0 chrX 115676794 115676883 -61297257 + (TC)n Simple_repeat Simple_repeat 1 89 0 269 196 31 41 chrX 115677538 115677635 -61296505 + MER96B DNA MER1_type? 241 336 -81 1433 169 48 26 chrX 115677645 115677774 -61296366 + AluJo SINE Alu 10 135 -177 2481 40 0 20 chrX 115677774 115678062 -61296078 + AluY SINE Alu 1 284 -27 198 0 0 0 chrX 115678062 115678084 -61296056 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2481 40 0 20 chrX 115678084 115678096 -61296044 + AluY SINE Alu 284 295 -16 1433 169 48 26 chrX 115678096 115678238 -61295902 + AluJo SINE Alu 135 287 -25 241 216 0 20 chrX 115678273 115678324 -61295816 - MER96B DNA MER1_type? -330 87 38 2419 73 0 3 chrX 115680840 115681142 -61292998 - AluY SINE Alu -10 301 1 1441 169 8 0 chrX 115681497 115681751 -61292389 - AluJb SINE Alu -14 298 43 676 195 0 78 chrX 115681985 115682139 -61292001 + FLAM_C SINE Alu 2 143 0 32 0 0 0 chrX 115682173 115682205 -61291935 + AT_rich Low_complexity Low_complexity 1 32 0 514 156 11 0 chrX 115682356 115682446 -61291694 - Alu SINE Alu -8 303 213 1904 133 13 10 chrX 115682552 115682853 -61291287 - AluSx SINE Alu -5 307 6 222 146 55 18 chrX 115684379 115684434 -61289706 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1283 194 51 18 chrX 115684435 115684708 -61289432 - AluJo SINE Alu -25 287 6 189 0 0 0 chrX 115685760 115685781 -61288359 + (TG)n Simple_repeat Simple_repeat 1 21 0 446 59 0 188 chrX 115686842 115686943 -61287197 + AluJ/FRAM SINE Alu 218 299 -13 1324 211 6 16 chrX 115686961 115687264 -61286876 + AluJo SINE Alu 3 304 -8 234 0 0 0 chrX 115687264 115687290 -61286850 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 225 256 103 0 chrX 115687392 115687470 -61286670 + ORSL DNA AcHobo 183 268 -7 271 235 43 52 chrX 115687799 115687914 -61286226 + MER113 DNA MER1_type? 1 114 -407 618 260 22 22 chrX 115687990 115688171 -61285969 + MIR SINE MIR 19 199 -63 524 307 23 28 chrX 115688172 115688387 -61285753 - MIR SINE MIR 0 262 49 383 249 6 28 chrX 115688816 115688940 -61285200 + MIR SINE MIR 27 151 -65 2564 49 0 13 chrX 115689232 115689539 -61284601 + AluY SINE Alu 1 303 -8 649 147 92 0 chrX 115689710 115689819 -61284321 - FLAM_A SINE Alu -7 135 17 5036 147 86 8 chrX 115689828 115690912 -61283228 - L1MA4A LINE L1 -23 6280 5113 817 276 57 87 chrX 115691534 115692222 -61281918 + PABL_B LTR ERV1 1 667 0 1345 174 23 34 chrX 115692472 115692737 -61281403 - AluJb SINE Alu -26 286 25 264 100 0 0 chrX 115693147 115693187 -61280953 + MLT2B1 LTR ERVL 1 40 -480 37 52 0 0 chrX 115693324 115693382 -61280758 + AT_rich Low_complexity Low_complexity 1 58 0 357 255 10 41 chrX 115694162 115694399 -61279741 + FRAM SINE Alu 72 305 0 865 189 228 77 chrX 115694435 115694848 -61279292 - MER66A LTR ERV1 0 478 100 2205 93 10 0 chrX 115694866 115695157 -61278983 - AluSx SINE Alu -6 306 13 1039 206 14 0 chrX 115696035 115696253 -61277887 - AluJo SINE Alu -7 305 85 1629 172 0 66 chrX 115696291 115696611 -61277529 + AluJo SINE Alu 1 299 -13 7696 47 0 0 chrX 115697912 115699618 -61274522 + L1PA5 LINE L1 4447 6153 -1 24 0 0 0 chrX 115699618 115699642 -61274498 + AT_rich Low_complexity Low_complexity 1 24 0 568 158 20 30 chrX 115699754 115699855 -61274285 + FLAM_C SINE Alu 30 129 -14 308 208 9 0 chrX 115699906 115700012 -61274128 + (TA)n Simple_repeat Simple_repeat 1 107 0 316 240 0 62 chrX 115700017 115700113 -61274027 + L1MC4 LINE L1 6614 6703 -1339 213 94 0 0 chrX 115700120 115700152 -61273988 + (TA)n Simple_repeat Simple_repeat 1 32 0 2083 137 0 3 chrX 115700153 115700445 -61273695 - AluSx SINE Alu -21 291 1 1632 198 6 10 chrX 115700477 115700790 -61273350 + AluJo SINE Alu 1 312 0 2475 201 31 18 chrX 115700862 115701375 -61272765 - MLT1F LTR MaLR -22 520 1 204 122 61 0 chrX 115701785 115701834 -61272306 + A-rich Low_complexity Low_complexity 5 56 0 2481 60 0 13 chrX 115703206 115703506 -61270634 + AluY SINE Alu 1 296 -15 1961 151 0 0 chrX 115704231 115704530 -61269610 - AluJb SINE Alu -11 301 3 763 175 0 29 chrX 115704740 115704877 -61269263 + AluJo SINE Alu 3 135 -177 22 35 0 0 chrX 115704918 115704947 -61269193 + AT_rich Low_complexity Low_complexity 1 29 0 2503 109 41 13 chrX 115705661 115706207 -61267933 + MER51A LTR ERV1 1 634 0 31 0 0 0 chrX 115706260 115706291 -61267849 + GC_rich Low_complexity Low_complexity 1 31 0 828 168 0 0 chrX 115706320 115706445 -61267695 - FLAM_C SINE Alu -18 125 1 30 27 0 0 chrX 115707928 115707965 -61266175 + AT_rich Low_complexity Low_complexity 1 37 0 6269 17 0 0 chrX 115707965 115708665 -61265475 - L1PA2 LINE L1 -2 6153 5454 1816 155 3 26 chrX 115708674 115708780 -61265360 - AluSx SINE Alu -10 302 195 2328 110 0 0 chrX 115708780 115709081 -61265059 - AluSq SINE Alu -12 301 1 1816 155 3 26 chrX 115709081 115709283 -61264857 - AluSx SINE Alu -117 195 1 17679 48 3 1 chrX 115709305 115712256 -61261884 - L1PA5 LINE L1 -5 6149 3195 19640 85 7 9 chrX 115712256 115712755 -61261385 - L1PA5 LINE L1 -3521 2625 2127 2550 61 0 0 chrX 115712755 115713051 -61261089 + AluY SINE Alu 1 296 -15 19640 85 7 9 chrX 115713051 115715170 -61258970 - L1PA5 LINE L1 -4019 2127 11 3886 212 61 96 chrX 115715204 115716180 -61257960 + L1MC2 LINE L1 -135 873 -5553 674 190 0 29 chrX 115716180 115716317 -61257823 - FLAM_C SINE Alu 0 133 1 3886 212 61 96 chrX 115716317 115716405 -61257735 + L1MC2 LINE L1 873 962 -5464 1709 173 21 7 chrX 115716405 115716688 -61257452 + AluJo SINE Alu 3 289 -23 3886 212 61 96 chrX 115716688 115717004 -61257136 + L1MC2 LINE L1 962 1287 -5139 1130 171 164 15 chrX 115717004 115717267 -61256873 + AluJo SINE Alu 1 302 0 3886 212 61 96 chrX 115717267 115717779 -61256361 + L1MC2 LINE L1 1287 1815 -4611 2342 88 3 13 chrX 115717779 115718084 -61256056 - AluSg SINE Alu -8 302 1 3886 212 61 96 chrX 115718084 115718114 -61256026 + L1MC2 LINE L1 1815 1844 -4582 2055 113 41 0 chrX 115718114 115718407 -61255733 + AluSq SINE Alu 1 305 -8 3886 212 61 96 chrX 115718407 115718731 -61255409 + L1MC2 LINE L1 1844 2230 -4196 1106 175 0 0 chrX 115718747 115718924 -61255216 + FRAM SINE Alu 1 172 -4 1272 139 22 73 chrX 115718934 115719295 -61254845 + L1MC2 LINE L1 2219 2433 -3993 1634 189 29 4 chrX 115719295 115719591 -61254549 + AluJb SINE Alu 1 303 0 1272 139 22 73 chrX 115719591 115719623 -61254517 + L1MC2 LINE L1 2433 2465 -3961 228 152 0 0 chrX 115719706 115719739 -61254401 + AluSx SINE Alu 2 34 -267 5567 51 54 119 chrX 115719739 115720622 -61253518 + LTR12 LTR ERV1 1 826 0 1817 134 0 60 chrX 115720622 115720921 -61253219 + AluSx SINE Alu 31 311 -1 1607 230 30 13 chrX 115720921 115721500 -61252640 + L1MC2 LINE L1 2603 3326 -3100 2153 99 7 0 chrX 115721500 115721782 -61252358 + AluY SINE Alu 14 297 -14 1607 230 30 13 chrX 115721782 115722017 -61252123 + L1MC2 LINE L1 3326 3556 -2870 780 198 6 42 chrX 115722017 115722184 -61251956 - FRAM SINE Alu -14 162 2 7430 195 46 48 chrX 115722186 115722331 -61251809 + L1MC2 LINE L1 3553 3697 -2927 2734 51 21 0 chrX 115722331 115722667 -61251473 - LTR14A LTR ERVK 0 344 2 7430 195 46 48 chrX 115722667 115723401 -61250739 + L1MC2 LINE L1 3697 4431 -2193 189 0 0 0 chrX 115723401 115723422 -61250718 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 7430 195 46 48 chrX 115723422 115724331 -61249809 + L1MC2 LINE L1 4431 5340 -1284 1864 154 3 7 chrX 115724331 115724629 -61249511 + AluJb SINE Alu 1 297 -15 7430 195 46 48 chrX 115724629 115724810 -61249330 + L1MC2 LINE L1 5340 5520 -1104 2184 110 0 3 chrX 115724810 115725102 -61249038 + AluSg SINE Alu 1 291 -19 7430 195 46 48 chrX 115725102 115725783 -61248357 + L1MC2 LINE L1 5520 6174 -450 2843 98 21 8 chrX 115725798 115726187 -61247953 + MLT2A2 LTR ERVL 1 394 -59 378 0 0 0 chrX 115726187 115726229 -61247911 + (TA)n Simple_repeat Simple_repeat 2 43 0 543 135 15 30 chrX 115726280 115726413 -61247727 + (TA)n Simple_repeat Simple_repeat 1 131 0 376 93 0 0 chrX 115726421 115726475 -61247665 + MLT2A2 LTR ERVL 390 443 -1 2210 124 9 95 chrX 115726475 115726774 -61247366 + L1MC2 LINE L1 6204 6527 -97 1982 112 0 54 chrX 115726774 115727070 -61247070 + AluSq SINE Alu 3 282 -31 189 74 0 0 chrX 115727073 115727100 -61247040 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2210 124 9 95 chrX 115727100 115727247 -61246893 + L1MC2 LINE L1 6529 6615 -9 220 277 0 0 chrX 115727456 115727503 -61246637 + polypurine Low_complexity Low_complexity 2 48 0 1986 138 0 7 chrX 115728723 115729019 -61245121 + AluSx SINE Alu 1 294 -18 1782 95 0 0 chrX 115729033 115729254 -61244886 + AluSg SINE Alu 1 221 -89 2035 140 0 0 chrX 115729895 115730187 -61243953 + AluSx SINE Alu 1 292 -20 1587 180 41 3 chrX 115730240 115730535 -61243605 + AluJb SINE Alu 1 306 -6 2378 98 0 0 chrX 115730556 115730861 -61243279 + AluSc SINE Alu 2 306 -3 924 156 131 39 chrX 115730959 115731067 -61243073 + L1MA4A LINE L1 5971 6068 -235 1618 163 45 14 chrX 115731067 115731356 -61242784 - AluJb SINE Alu -14 298 1 924 156 131 39 chrX 115731356 115731405 -61242735 + L1MA4A LINE L1 6068 6111 -192 2220 97 0 20 chrX 115731405 115731703 -61242437 - AluSx SINE Alu -20 292 1 924 156 131 39 chrX 115731703 115731827 -61242313 + L1MA4A LINE L1 6111 6279 -24 1186 134 11 11 chrX 115731830 115732017 -61242123 + AluSg/x SINE Alu 121 307 -5 1607 128 13 73 chrX 115732043 115732356 -61241784 + AluSx SINE Alu 1 294 -18 258 197 30 15 chrX 115732574 115732640 -61241500 + (CATA)n Simple_repeat Simple_repeat 4 70 0 244 303 112 59 chrX 115733737 115733889 -61240251 + L2 LINE L2 3112 3271 -1 1971 137 0 7 chrX 115734172 115734471 -61239669 - AluJb SINE Alu -15 297 1 186 274 0 0 chrX 115734602 115734653 -61239487 + MIR SINE MIR 184 234 -28 1881 176 0 10 chrX 115734733 115735045 -61239095 + AluJb SINE Alu 1 309 -3 567 256 74 26 chrX 115735069 115735299 -61238841 + MIR SINE MIR 20 260 -2 2124 109 0 0 chrX 115735501 115735775 -61238365 - AluSx SINE Alu -9 303 30 2248 109 0 25 chrX 115736288 115736608 -61237532 - AluSx SINE Alu 0 312 1 732 150 0 86 chrX 115736645 115736751 -61237389 + AluJo/FLAM SINE Alu 6 99 -213 2328 96 0 0 chrX 115736751 115737044 -61237096 - AluSx SINE Alu -18 294 2 732 150 0 86 chrX 115737044 115737077 -61237063 + AluJo/FLAM SINE Alu 99 133 -179 2139 107 44 0 chrX 115737088 115737386 -61236754 + AluSx SINE Alu 1 311 -1 25 31 0 0 chrX 115737940 115737972 -61236168 + AT_rich Low_complexity Low_complexity 1 32 0 2488 58 0 3 chrX 115738270 115738562 -61235578 - AluSg SINE Alu -19 291 1 829 118 39 0 chrX 115738836 115738963 -61235177 + FLAM_C SINE Alu 1 132 -1 2526 93 0 0 chrX 115739024 115739334 -61234806 - AluSg SINE Alu 0 310 1 530 218 183 40 chrX 115740455 115740657 -61233483 - MIR SINE MIR 0 262 32 202 229 21 0 chrX 115740736 115740784 -61233356 + MER91A DNA MER1_type 116 164 -32 197 360 61 9 chrX 115741504 115741618 -61232522 + L2 LINE L2 3081 3200 -72 304 266 101 30 chrX 115741637 115741934 -61232206 - L1MC5 LINE L1 -36 7925 7608 2280 107 13 7 chrX 115742201 115742511 -61231629 - AluSx SINE Alu 0 312 1 487 229 168 11 chrX 115742513 115742692 -61231448 - L1MC5 LINE L1 -50 7911 7705 885 55 0 0 chrX 115742694 115742804 -61231336 - AluY SINE Alu -3 308 199 904 102 7 36 chrX 115742844 115742981 -61231159 + FLAM_C SINE Alu 1 133 0 1736 179 101 52 chrX 115743093 115743589 -61230551 - L1MC5 LINE L1 -550 7411 6892 1816 149 3 26 chrX 115743666 115743968 -61230172 - AluJb SINE Alu -17 295 1 1281 152 0 5 chrX 115744043 115744240 -61229900 - AluJo SINE Alu -30 282 87 2318 96 0 43 chrX 115745116 115745440 -61228700 - AluSg SINE Alu 0 310 1 425 154 0 0 chrX 115745447 115745525 -61228615 - Alu SINE Alu 0 311 234 2079 108 4 4 chrX 115745526 115745803 -61228337 - AluSq SINE Alu -36 277 1 2135 117 3 0 chrX 115745806 115746124 -61228016 - AluSx SINE Alu 0 320 2 222 37 0 0 chrX 115747121 115747148 -61226992 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 243 221 65 0 chrX 115747396 115747466 -61226674 + L1M4 LINE L1 4114 4191 -1955 1981 128 21 0 chrX 115747466 115747748 -61226392 + AluSx SINE Alu 1 288 -24 2251 103 10 0 chrX 115747801 115748091 -61226049 + AluSq SINE Alu 1 293 -20 712 258 37 26 chrX 115748113 115748384 -61225756 + L1M4 LINE L1 4208 4481 -1665 397 248 30 30 chrX 115748553 115748686 -61225454 + L1M4 LINE L1 4574 4706 -1440 946 269 54 31 chrX 115748693 115749017 -61225123 + L1M4 LINE L1 4481 4819 -1327 2397 99 0 0 chrX 115749017 115749319 -61224821 + AluSq SINE Alu 1 302 -11 946 269 54 31 chrX 115749319 115749417 -61224723 + L1M4 LINE L1 4819 4913 -1233 730 91 0 0 chrX 115749422 115749521 -61224619 + AluSg/x SINE Alu 175 273 -37 2396 107 0 0 chrX 115749575 115749883 -61224257 - AluSq SINE Alu -5 308 1 2198 121 0 7 chrX 115750095 115750401 -61223739 + AluSx SINE Alu 1 304 -8 2929 12 0 6 chrX 115750406 115750726 -61223414 + AluYb8 SINE Alu 1 318 0 2093 118 49 0 chrX 115750814 115751101 -61223039 + AluSx SINE Alu 1 301 -11 2242 105 3 0 chrX 115751676 115751971 -61222169 + AluSx SINE Alu 1 296 -16 2480 61 3 3 chrX 115751971 115752266 -61221874 + AluSq SINE Alu 1 295 -18 2347 93 3 0 chrX 115752699 115752989 -61221151 - AluSp SINE Alu -22 291 1 2176 136 0 0 chrX 115753431 115753733 -61220407 - AluSx SINE Alu -10 302 1 2028 143 3 0 chrX 115753916 115754216 -61219924 - AluSx SINE Alu -11 301 1 2294 99 0 3 chrX 115754520 115754824 -61219316 + AluY SINE Alu 1 303 -8 2151 117 0 10 chrX 115756799 115757098 -61217042 - AluSx SINE Alu -16 296 1 809 215 326 23 chrX 115758002 115758130 -61216010 - L2 LINE L2 -2 3311 3223 2074 128 0 0 chrX 115758130 115758436 -61215704 + AluSx SINE Alu 1 306 0 809 215 326 23 chrX 115758436 115758695 -61215445 - L2 LINE L2 -90 3223 2804 361 250 10 0 chrX 115758715 115758811 -61215329 + MER5A DNA MER1_type 9 105 -84 2092 112 3 18 chrX 115758857 115759032 -61215108 - AluSx SINE Alu 0 308 137 2208 101 30 0 chrX 115759032 115759330 -61214810 - AluSp SINE Alu -6 307 1 2092 112 3 18 chrX 115759330 115759466 -61214674 - AluSx SINE Alu -171 137 1 2391 97 0 6 chrX 115759525 115759836 -61214304 - AluSg SINE Alu -1 309 1 1812 130 7 38 chrX 115759861 115760153 -61213987 + AluJo SINE Alu 1 283 -29 588 54 32 11 chrX 115760153 115760246 -61213894 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 891 194 10 5 chrX 115760283 115760489 -61213651 + AluJb SINE Alu 2 301 -11 2581 208 120 46 chrX 115760492 115760545 -61213595 - L2 LINE L2 -557 2757 2709 849 152 0 0 chrX 115760545 115760677 -61213463 + FLAM_C SINE Alu 2 133 0 2581 208 120 46 chrX 115760677 115760856 -61213284 - L2 LINE L2 -605 2709 2545 2366 95 0 0 chrX 115760856 115761150 -61212990 + AluSq SINE Alu 1 294 -19 2581 208 120 46 chrX 115761150 115761738 -61212402 - L2 LINE L2 -769 2545 1875 2192 129 0 7 chrX 115762039 115762349 -61211791 + AluJo SINE Alu 1 308 -4 2319 103 0 10 chrX 115762407 115762709 -61211431 - AluSx SINE Alu -13 299 1 297 0 0 0 chrX 115762855 115762888 -61211252 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2170 111 0 0 chrX 115762888 115763167 -61210973 - AluSx SINE Alu -32 280 2 189 0 0 0 chrX 115763485 115763506 -61210634 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 279 0 0 0 chrX 115763507 115763538 -61210602 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 820 138 0 0 chrX 115763538 115763654 -61210486 - FLAM_C SINE Alu -25 118 3 342 281 0 12 chrX 115763848 115763930 -61210210 - MER2 DNA MER2_type -264 81 1 881 187 39 0 chrX 115763972 115764127 -61210013 + AluSp SINE Alu 137 297 -16 244 368 53 21 chrX 115764140 115764425 -61209715 + L2 LINE L2 2456 2749 -565 2424 75 0 20 chrX 115764425 115764731 -61209409 + AluSq SINE Alu 1 300 -13 881 127 134 0 chrX 115764810 115764952 -61209188 + FRAM SINE Alu 1 161 -15 2305 111 0 3 chrX 115765285 115765591 -61208549 - AluSx SINE Alu -7 305 1 848 164 240 18 chrX 115765610 115765700 -61208440 - ORSL DNA AcHobo 0 275 206 2357 87 3 0 chrX 115765700 115765999 -61208141 + AluSp SINE Alu 1 300 -13 848 164 240 18 chrX 115765999 115766133 -61208007 - ORSL DNA AcHobo -69 206 1 1775 130 0 23 chrX 115766490 115766751 -61207389 - AluJb SINE Alu -22 290 36 2107 90 65 0 chrX 115766764 115767041 -61207099 - AluSx SINE Alu -17 295 1 1454 124 0 0 chrX 115767111 115767313 -61206827 - AluSx SINE Alu -7 303 102 990 91 0 0 chrX 115767336 115767457 -61206683 - AluSx SINE Alu -192 121 1 353 263 126 34 chrX 115767526 115767701 -61206439 - MIR3 SINE MIR -3 205 15 2363 83 10 7 chrX 115768356 115768658 -61205482 - AluSx SINE Alu -9 303 1 1812 140 11 4 chrX 115768915 115769210 -61204930 + AluJo SINE Alu 10 306 0 2196 120 0 3 chrX 115769231 115769532 -61204608 + AluSx SINE Alu 1 300 -12 401 231 41 8 chrX 115769602 115769723 -61204417 + MIR SINE MIR 126 250 -12 2231 107 0 32 chrX 115769818 115770128 -61204012 + AluSq SINE Alu 1 300 -13 2478 71 3 7 chrX 115770129 115770439 -61203701 + AluSc SINE Alu 1 309 0 185 143 0 0 chrX 115770544 115770572 -61203568 - MIR SINE MIR -79 183 156 1292 216 55 51 chrX 115770636 115771176 -61202964 - L2 LINE L2 -2 3311 2753 1937 134 13 27 chrX 115771599 115771759 -61202381 - AluJb SINE Alu -18 294 138 2273 103 0 7 chrX 115771759 115772059 -61202081 - AluSg SINE Alu -12 298 1 1937 134 13 27 chrX 115772059 115772196 -61201944 - AluJb SINE Alu -174 138 1 1939 141 27 7 chrX 115772424 115772721 -61201419 + AluJo SINE Alu 1 303 -9 2540 68 3 0 chrX 115773671 115773979 -61200161 + AluSq SINE Alu 1 309 -4 645 215 0 0 chrX 115774139 115774246 -61199894 + FLAM_A SINE Alu 4 110 -32 2188 87 0 45 chrX 115774288 115774597 -61199543 + AluSg SINE Alu 1 295 -15 2154 70 3 35 chrX 115774612 115774929 -61199211 - AluSp SINE Alu 0 313 6 2383 98 0 3 chrX 115774942 115775239 -61198901 - AluSx SINE Alu -16 296 1 350 302 91 23 chrX 115775326 115775634 -61198506 - L1M4 LINE L1 -1917 4229 3901 1899 166 0 13 chrX 115775825 115776126 -61198014 + AluJb SINE Alu 1 297 -15 2049 102 13 33 chrX 115776129 115776269 -61197871 + AluSx SINE Alu 1 142 -170 2407 91 0 0 chrX 115776269 115776565 -61197575 + AluSp SINE Alu 1 296 -17 2049 102 13 33 chrX 115776565 115776728 -61197412 + AluSx SINE Alu 142 298 -14 344 229 115 33 chrX 115776885 115777007 -61197133 + LTR33 LTR ERVL 1 132 -389 513 234 28 7 chrX 115777174 115777315 -61196825 + LTR33 LTR ERVL 370 513 -8 187 397 0 0 chrX 115777348 115777421 -61196719 - MIR SINE MIR -187 75 3 2483 90 0 0 chrX 115777465 115777775 -61196365 - AluSg SINE Alu 0 310 1 2307 89 0 20 chrX 115777848 115778150 -61195990 - AluSq SINE Alu -15 298 3 1048 231 21 21 chrX 115778311 115778484 -61195656 - AluJo SINE Alu -5 307 132 1775 125 3 98 chrX 115778484 115778811 -61195329 - AluY SINE Alu -15 296 1 1048 231 21 21 chrX 115778811 115778879 -61195261 - AluJo SINE Alu -179 133 66 2416 103 0 0 chrX 115779203 115779514 -61194626 + AluY SINE Alu 1 311 0 2434 94 3 0 chrX 115779552 115779861 -61194279 + AluSx SINE Alu 1 310 -2 646 77 0 19 chrX 115780156 115780260 -61193880 + (TCCCC)n Simple_repeat Simple_repeat 5 106 0 531 229 105 13 chrX 115780750 115780903 -61193237 - MIR SINE MIR -13 249 83 2836 76 65 86 chrX 115780987 115781107 -61193033 - MER4C LTR ERV1 0 465 344 1866 162 7 3 chrX 115781107 115781404 -61192736 - AluJo SINE Alu -14 298 1 2211 120 0 0 chrX 115781414 115781714 -61192426 - AluSq SINE Alu -13 300 1 2836 76 65 86 chrX 115781714 115781744 -61192396 - MER4C LTR ERV1 -130 335 306 2286 99 0 0 chrX 115781744 115782067 -61192073 + AluSq SINE Alu 1 323 0 2836 76 65 86 chrX 115782067 115782378 -61191762 - MER4C LTR ERV1 -159 306 1 562 268 6 13 chrX 115782449 115782606 -61191534 + MIR SINE MIR 102 257 -5 210 71 0 0 chrX 115782608 115782636 -61191504 + (TC)n Simple_repeat Simple_repeat 2 29 0 1569 65 0 0 chrX 115782641 115782827 -61191313 - AluSq SINE Alu 0 313 128 660 95 0 0 chrX 115782827 115782911 -61191229 - AluSq SINE Alu -228 85 2 1592 194 36 16 chrX 115782916 115783220 -61190920 - AluJb SINE Alu -1 311 2 2125 107 28 0 chrX 115783265 115783554 -61190586 + AluSq SINE Alu 1 297 -16 292 222 0 130 chrX 115783739 115783774 -61190366 + MIR SINE MIR 3 41 -167 2278 119 0 0 chrX 115783774 115784077 -61190063 + AluSq SINE Alu 1 303 -10 292 222 0 130 chrX 115784077 115784168 -61189972 + MIR SINE MIR 41 106 -102 1500 225 61 28 chrX 115784168 115784564 -61189576 - LTR2 LTR ERV1 0 449 41 381 296 84 0 chrX 115784655 115784797 -61189343 + MIR SINE MIR 104 257 -5 6132 141 218 20 chrX 115784832 115786245 -61187895 - pTR5 LTR ERV1 -5 2433 741 2218 102 3 0 chrX 115786400 115786695 -61187445 + AluSq SINE Alu 1 296 -17 2367 97 0 3 chrX 115787076 115787407 -61186733 - AluSx SINE Alu 0 312 1 1229 171 0 5 chrX 115787437 115787636 -61186504 - AluJo SINE Alu -114 198 1 1799 148 30 0 chrX 115787695 115787959 -61186181 - AluJb SINE Alu -30 282 11 1079 100 13 0 chrX 115788581 115788731 -61185409 + AluJb SINE Alu 127 278 -34 2370 95 0 0 chrX 115788984 115789280 -61184860 - AluSx SINE Alu -16 296 1 2410 95 0 3 chrX 115789306 115789612 -61184528 - AluSx SINE Alu -7 305 1 199 356 0 14 chrX 115790017 115790090 -61184050 - L2 LINE L2 -86 3186 3115 3164 113 24 143 chrX 115790168 115790888 -61183252 - MER51A LTR ERV1 0 634 1 21 0 0 0 chrX 115791183 115791204 -61182936 + AT_rich Low_complexity Low_complexity 1 21 0 4215 35 0 0 chrX 115791204 115791689 -61182451 - L1PA5 LINE L1 -15 6139 5655 2482 81 3 0 chrX 115792032 115792330 -61181810 - AluSp SINE Alu -14 299 1 2108 111 7 36 chrX 115792925 115793231 -61180909 + AluSx SINE Alu 1 297 -15 317 349 13 33 chrX 115793932 115794084 -61180056 - MIR SINE MIR -50 212 64 2238 120 3 3 chrX 115794206 115794514 -61179626 + AluSq SINE Alu 1 308 -5 2182 125 0 13 chrX 115794700 115794870 -61179270 - AluSx SINE Alu -9 303 137 2261 115 0 3 chrX 115794870 115795183 -61178957 - AluSx SINE Alu 0 312 1 2182 125 0 13 chrX 115795183 115795317 -61178823 - AluSx SINE Alu -175 137 3 770 172 0 39 chrX 115795329 115795457 -61178683 - FLAM_C SINE Alu -18 125 3 948 181 41 50 chrX 115795519 115795740 -61178400 - MER20 DNA MER1_type 0 219 1 299 274 116 66 chrX 115795765 115796215 -61177925 + L2 LINE L2 2713 3185 -87 936 121 8 8 chrX 115796236 115796368 -61177772 - AluSq/x SINE Alu -180 132 1 204 304 0 0 chrX 115796392 115796438 -61177702 + L2 LINE L2 3218 3263 -9 296 191 63 32 chrX 115796463 115796526 -61177614 + MIR SINE MIR 31 95 -113 2084 140 10 10 chrX 115796777 115797085 -61177055 + AluJo SINE Alu 1 308 -4 2382 96 0 3 chrX 115797188 115797491 -61176649 + AluSq SINE Alu 2 303 -10 219 114 0 0 chrX 115797765 115797800 -61176340 + (A)n Simple_repeat Simple_repeat 1 35 0 2081 123 26 3 chrX 115798173 115798475 -61175665 - AluSp SINE Alu -4 309 1 864 94 0 47 chrX 115799045 115799172 -61174968 - AluSg/x SINE Alu -9 303 183 1079 98 0 0 chrX 115799350 115799483 -61174657 + AluSq/x SINE Alu 1 133 -180 2227 117 0 10 chrX 115799485 115799794 -61174346 + AluSg SINE Alu 1 306 -4 2168 131 0 3 chrX 115800441 115800739 -61173401 - AluSx SINE Alu -15 297 1 551 215 70 64 chrX 115800808 115800980 -61173160 - MIR SINE MIR -84 178 6 2234 90 45 0 chrX 115801054 115801344 -61172796 + AluSg SINE Alu 3 305 -5 187 196 118 0 chrX 115801483 115801534 -61172606 - MER5A DNA MER1_type -126 63 7 263 194 144 108 chrX 115801574 115801713 -61172427 + MIR SINE MIR 49 192 -70 2134 128 0 22 chrX 115801798 115802117 -61172023 + AluSx SINE Alu 1 312 0 361 167 15 0 chrX 115802127 115802193 -61171947 + MER116 DNA Mariner 1 67 -13 1038 119 0 0 chrX 115802361 115802504 -61171636 - FRAM SINE Alu -10 166 24 769 265 67 78 chrX 115802504 115802678 -61171462 + L1MC/D LINE L1 4896 5070 -1100 623 193 35 9 chrX 115802678 115802792 -61171348 + FLAM_A SINE Alu 1 117 -16 769 265 67 78 chrX 115802792 115803194 -61170946 + L1MC/D LINE L1 5070 5436 -734 24 0 0 0 chrX 115803592 115803616 -61170524 + AT_rich Low_complexity Low_complexity 1 24 0 1378 96 82 36 chrX 115803842 115804019 -61170121 + AluSq SINE Alu 1 191 -122 2595 59 3 0 chrX 115804019 115804326 -61169814 - AluSp SINE Alu -5 308 1 1378 96 82 36 chrX 115804326 115804368 -61169772 + AluSq SINE Alu 191 230 -83 21 36 0 0 chrX 115804828 115804856 -61169284 + GC_rich Low_complexity Low_complexity 1 28 0 2220 89 0 41 chrX 115806557 115806873 -61167267 - AluSc SINE Alu -6 303 1 340 172 0 0 chrX 115806941 115806999 -61167141 + Charlie5 DNA MER1_type 5 62 -2550 268 250 0 0 chrX 115807175 115807223 -61166917 + L2 LINE L2 3248 3295 -18 183 42 0 0 chrX 115807351 115807375 -61166765 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 521 202 0 78 chrX 115807550 115807569 -61166571 - L2 LINE L2 0 3313 3294 2481 87 0 0 chrX 115807569 115807867 -61166273 - AluSg SINE Alu -12 298 1 521 202 0 78 chrX 115807867 115807976 -61166164 - L2 LINE L2 -19 3294 3195 933 191 41 156 chrX 115807988 115808328 -61165812 - AluYb8 SINE Alu -7 301 1 2040 135 3 16 chrX 115808405 115808716 -61165424 + AluJb SINE Alu 1 307 -5 814 172 0 8 chrX 115808800 115808934 -61165206 + FLAM_C SINE Alu 1 133 0 2295 125 0 3 chrX 115809203 115809515 -61164625 - AluSx SINE Alu -1 311 1 561 279 128 74 chrX 115809828 115810129 -61164011 - L2 LINE L2 -182 3090 2807 2377 86 0 7 chrX 115810129 115810433 -61163707 + AluSx SINE Alu 1 302 -10 2250 84 0 30 chrX 115810441 115810740 -61163400 + AluSg SINE Alu 1 290 -20 561 279 128 74 chrX 115810740 115810919 -61163221 - L2 LINE L2 -471 2801 2565 1307 199 112 30 chrX 115810919 115811033 -61163107 - L2 LINE L2 -3 3310 3207 1863 145 13 23 chrX 115811033 115811337 -61162803 + AluJo SINE Alu 5 305 -7 1307 199 112 30 chrX 115811337 115811588 -61162552 - L2 LINE L2 -106 3207 2915 1665 157 0 69 chrX 115811818 115812136 -61162004 - AluJo SINE Alu -16 296 1 2636 130 68 65 chrX 115812169 115812419 -61161721 - L1MB5 LINE L1 -10 6164 5916 2505 90 0 0 chrX 115812419 115812729 -61161411 - AluSg SINE Alu 0 310 1 2636 130 68 65 chrX 115812729 115813048 -61161092 - L1MB5 LINE L1 -258 5916 5593 1002 168 0 0 chrX 115813075 115813224 -61160916 - AluJo/FRAM SINE Alu -30 282 134 2422 94 0 0 chrX 115813224 115813531 -61160609 - AluSx SINE Alu -5 307 1 2584 199 12 55 chrX 115813534 115814223 -61159917 - L1M4 LINE L1 -1656 4490 3832 3953 175 23 47 chrX 115814230 115815066 -61159074 - MER21B LTR ERV1 0 863 48 1438 96 0 0 chrX 115815105 115815283 -61158857 - AluSg/x SINE Alu 0 312 135 2324 85 0 14 chrX 115815283 115815576 -61158564 - AluSc SINE Alu -20 289 1 2351 100 0 3 chrX 115815576 115815875 -61158265 - AluSg SINE Alu -12 298 1 195 42 0 0 chrX 115816082 115816106 -61158034 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 579 275 88 16 chrX 115816143 115816336 -61157804 + MIR SINE MIR 56 262 0 2106 97 25 7 chrX 115816530 115816832 -61157308 + AluSx SINE Alu 1 307 0 1747 148 27 30 chrX 115816858 115817195 -61156945 + MER46B DNA MER2_type 26 236 0 239 306 35 88 chrX 115817231 115817331 -61156809 - L3b LINE CR1 -160 1423 1334 2230 84 25 3 chrX 115817331 115817615 -61156525 - AluSx SINE Alu -22 290 1 239 306 35 88 chrX 115817615 115817684 -61156456 - L3b LINE CR1 -249 1334 1263 1897 136 11 11 chrX 115818183 115818491 -61155649 - AluJb SINE Alu 0 312 11 1159 232 147 1 chrX 115818759 115819089 -61155051 + L1ME3A LINE L1 5354 5725 -445 333 243 0 0 chrX 115819100 115819174 -61154966 + L1ME3A LINE L1 5771 5844 -326 805 53 0 0 chrX 115819180 115819275 -61154865 + AluSg1 SINE Alu 1 95 -214 3004 99 63 61 chrX 115819287 115819841 -61154299 - LTR10A LTR ERV1 -54 555 1 1593 81 0 54 chrX 115819841 115820063 -61154077 + AluSg1 SINE Alu 93 302 -10 801 202 61 18 chrX 115820074 115820405 -61153735 + L1ME3A LINE L1 5866 6165 -3 753 233 42 16 chrX 115820429 115820622 -61153518 + MLT1D LTR MaLR 1 198 -307 1120 147 0 6 chrX 115820625 115820797 -61153343 + AluJo SINE Alu 67 235 -77 911 142 61 71 chrX 115820821 115821033 -61153107 + MLT1D LTR MaLR 202 411 -94 596 165 23 3 chrX 115821071 115821193 -61152947 + MLT1D LTR MaLR 405 505 0 823 189 53 80 chrX 115821198 115821336 -61152804 - L2 LINE L2 -938 2376 2247 2302 91 3 7 chrX 115821336 115821645 -61152495 - AluSx SINE Alu -4 308 1 823 189 53 80 chrX 115821645 115821770 -61152370 - L2 LINE L2 -1067 2247 2120 2161 105 3 0 chrX 115822145 115822431 -61151709 - AluSx SINE Alu -25 287 1 1079 90 0 0 chrX 115822434 115822567 -61151573 - AluSq/x SINE Alu -180 133 1 562 185 32 11 chrX 115822568 115822725 -61151415 - L1ME1 LINE L1 -197 5969 5708 1056 126 13 6 chrX 115822925 115823084 -61151056 - FRAM SINE Alu -20 156 1 2274 80 3 20 chrX 115825622 115825922 -61148218 + AluSg SINE Alu 1 295 -15 1917 136 23 30 chrX 115826353 115826654 -61147486 - AluJo SINE Alu -13 299 1 304 128 21 0 chrX 115826654 115826701 -61147439 - L1 LINE L1 -1227 4919 4872 240 140 0 65 chrX 115826713 115826769 -61147371 - Alu SINE Alu -2 131 85 2161 108 6 40 chrX 115827127 115827450 -61146690 - AluSx SINE Alu 0 312 1 1888 137 47 20 chrX 115827675 115828018 -61146122 - L1MB7 LINE L1 -18 6166 5815 5139 135 32 29 chrX 115828021 115828356 -61145784 - L1MB2 LINE L1 -2 6169 5837 2190 123 3 10 chrX 115828356 115828665 -61145475 - AluSq SINE Alu -6 307 1 5139 135 32 29 chrX 115828665 115828873 -61145267 - L1MB2 LINE L1 -334 5837 5631 2098 128 13 3 chrX 115828873 115829178 -61144962 - AluSx SINE Alu -4 308 1 1622 117 0 17 chrX 115829183 115829413 -61144727 - AluSq SINE Alu -3 310 85 5139 135 32 29 chrX 115829413 115829909 -61144231 - L1MB2 LINE L1 -543 5628 5118 376 27 9 0 chrX 115829924 115829978 -61144162 - L1MB1 LINE L1 -1 6167 6127 302 164 15 0 chrX 115830045 115830112 -61144028 - L1MA9 LINE L1 0 6312 6245 1149 129 79 0 chrX 115830119 115830297 -61143843 - AluSc SINE Alu 0 309 118 2329 113 0 0 chrX 115830301 115830610 -61143530 - AluSx SINE Alu -3 309 1 226 132 0 0 chrX 115830610 115830648 -61143492 - L1MA9 LINE L1 -59 6253 6216 273 181 129 19 chrX 115830671 115830770 -61143370 - L1MA9 LINE L1 -25 6272 6169 1373 138 11 39 chrX 115830800 115831060 -61143080 - L1MB7 LINE L1 -5 6179 5927 2482 86 3 0 chrX 115831759 115832062 -61142078 + AluSp SINE Alu 1 304 -9 2252 98 0 0 chrX 115832311 115832619 -61141521 + AluSq SINE Alu 1 308 0 315 252 135 0 chrX 115833525 115833636 -61140504 + MIR SINE MIR 59 184 -78 331 211 28 0 chrX 115833897 115833968 -61140172 + L1ME LINE L1 5586 5658 -463 186 71 0 0 chrX 115833976 115834004 -61140136 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 429 20 0 0 chrX 115834031 115834081 -61140059 + (TG)n Simple_repeat Simple_repeat 1 50 0 2136 90 14 0 chrX 115834082 115834360 -61139780 - AluSx SINE Alu -30 282 1 425 273 108 0 chrX 115834472 115834611 -61139529 - L1ME LINE L1 -451 5670 5517 270 183 17 43 chrX 115835411 115835526 -61138614 + A-rich Low_complexity Low_complexity 5 116 0 1782 166 3 17 chrX 115837585 115837880 -61136260 + AluJb SINE Alu 1 291 -21 2496 76 0 3 chrX 115839026 115839328 -61134812 - AluY SINE Alu -10 301 1 2154 126 0 3 chrX 115839417 115839710 -61134430 + AluSx SINE Alu 1 292 -20 2633 47 0 0 chrX 115839712 115840009 -61134131 + AluY SINE Alu 1 297 -14 1150 206 100 66 chrX 115840011 115840297 -61133843 - L1MC5 LINE L1 -77 7884 7609 2341 92 0 0 chrX 115840297 115840589 -61133551 - AluSx SINE Alu -20 292 1 1150 206 100 66 chrX 115840589 115840658 -61133482 - L1MC5 LINE L1 -352 7609 7544 1720 162 47 7 chrX 115840658 115840955 -61133185 - AluJo SINE Alu -3 309 1 1150 206 100 66 chrX 115840955 115841127 -61133013 - L1MC5 LINE L1 -417 7544 7338 1514 210 7 3 chrX 115841127 115841418 -61132722 + AluJb SINE Alu 1 292 -20 393 279 39 0 chrX 115842703 115842807 -61131333 - MSTB LTR MaLR -112 314 207 2108 122 3 0 chrX 115842856 115843142 -61130998 + AluSx SINE Alu 1 287 -25 1085 159 0 18 chrX 115843150 115843320 -61130820 + AluJb SINE Alu 129 295 -17 24 0 0 0 chrX 115843320 115843344 -61130796 + AT_rich Low_complexity Low_complexity 1 24 0 2103 114 0 30 chrX 115844094 115844392 -61129748 + AluSx SINE Alu 1 289 -23 1355 216 32 7 chrX 115844403 115844686 -61129454 + AluJb SINE Alu 1 290 -22 2109 120 13 0 chrX 115845043 115845342 -61128798 + AluSq SINE Alu 1 303 -10 183 100 0 0 chrX 115845890 115845920 -61128220 + (T)n Simple_repeat Simple_repeat 1 30 0 1909 150 104 20 chrX 115846042 115846435 -61127705 - MSTB LTR MaLR 0 426 1 233 322 59 0 chrX 115846658 115846776 -61127364 - L2 LINE L2 -1299 2015 1891 633 276 88 15 chrX 115846841 115847182 -61126958 - L2 LINE L2 -1064 2250 1885 2242 102 3 0 chrX 115847345 115847639 -61126501 + AluSg SINE Alu 3 297 -13 2309 108 0 0 chrX 115847641 115847938 -61126202 + AluSq SINE Alu 1 297 -16 1820 191 3 0 chrX 115847973 115848272 -61125868 - AluJb SINE Alu -12 300 1 1995 128 0 46 chrX 115848297 115848624 -61125516 + AluSx SINE Alu 1 312 0 1970 136 13 16 chrX 115848628 115848937 -61125203 + AluSx SINE Alu 1 308 -4 1655 88 10 0 chrX 115848967 115849172 -61124968 + AluSc SINE Alu 1 207 -102 270 93 93 0 chrX 115849172 115849215 -61124925 + AluSc SINE Alu 241 287 -15 7762 109 20 47 chrX 115849253 115849308 -61124832 - HSMAR2 DNA Mariner -65 1237 1182 183 42 0 0 chrX 115849308 115849332 -61124808 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 7762 109 20 47 chrX 115849332 115849920 -61124220 - HSMAR2 DNA Mariner -120 1182 579 467 143 0 0 chrX 115849920 115849997 -61124143 + MADE1 DNA Mariner 4 80 0 7762 109 20 47 chrX 115849997 115850162 -61123978 - HSMAR2 DNA Mariner -723 579 411 2116 120 0 3 chrX 115850162 115850463 -61123677 - AluSx SINE Alu -12 300 1 7762 109 20 47 chrX 115850463 115850489 -61123651 - HSMAR2 DNA Mariner -891 411 386 2143 122 0 7 chrX 115850489 115850785 -61123355 - AluSx SINE Alu -18 294 1 7762 109 20 47 chrX 115850785 115851217 -61122923 - HSMAR2 DNA Mariner -916 386 3 1848 142 101 14 chrX 115851228 115851573 -61122567 + THE1C LTR MaLR 1 375 0 2331 113 0 0 chrX 115851595 115851905 -61122235 + AluSx SINE Alu 1 310 -2 234 341 153 29 chrX 115852278 115852448 -61121692 - L2 LINE L2 -2 3270 3080 586 160 0 11 chrX 115852705 115852799 -61121341 + AluJ/FLAM SINE Alu 2 94 -218 2176 121 0 13 chrX 115852808 115853114 -61121026 + AluSx SINE Alu 11 312 0 1221 209 65 4 chrX 115853125 115853403 -61120737 + AluJb SINE Alu 1 295 -17 2154 124 0 7 chrX 115853754 115854060 -61120080 + AluSq SINE Alu 1 304 -9 2305 103 0 7 chrX 115854836 115855146 -61118994 - AluSg SINE Alu -2 308 1 1989 135 104 20 chrX 115855291 115855684 -61118456 - MSTB LTR MaLR 0 426 1 410 235 36 9 chrX 115855780 115855888 -61118252 - AluJ/FLAM SINE Alu -227 75 2 1830 134 0 31 chrX 115855893 115856183 -61117957 + AluSx SINE Alu 1 281 -31 1915 125 0 24 chrX 115856211 115856498 -61117642 + AluSx SINE Alu 1 280 -32 2156 120 0 0 chrX 115856527 115856826 -61117314 + AluSx SINE Alu 11 309 -3 7614 120 24 65 chrX 115856834 115857310 -61116830 - HSMAR2 DNA Mariner -13 1289 795 2389 91 0 0 chrX 115857310 115857608 -61116532 + AluSg SINE Alu 1 298 -12 7614 120 24 65 chrX 115857608 115857841 -61116299 - HSMAR2 DNA Mariner -507 795 554 326 155 84 0 chrX 115857841 115857912 -61116228 + MADE1 DNA Mariner 4 80 0 7614 120 24 65 chrX 115857912 115858107 -61116033 - HSMAR2 DNA Mariner -748 554 353 1630 129 71 0 chrX 115858107 115858347 -61115793 - AluSq SINE Alu -56 257 1 7614 120 24 65 chrX 115858347 115858376 -61115764 - HSMAR2 DNA Mariner -949 353 324 2302 113 0 0 chrX 115858376 115858677 -61115463 - AluSg SINE Alu -9 301 1 7614 120 24 65 chrX 115858677 115859083 -61115057 - HSMAR2 DNA Mariner -978 324 2 1568 197 63 32 chrX 115859093 115859395 -61114745 + THE1C LTR MaLR 1 315 -113 1759 141 14 4 chrX 115859395 115859672 -61114468 + AluSx SINE Alu 1 280 -32 1568 197 63 32 chrX 115859672 115859790 -61114350 + THE1C LTR MaLR 315 428 0 268 306 153 29 chrX 115860158 115860328 -61113812 - L2 LINE L2 -2 3270 3080 2150 113 0 0 chrX 115860580 115860862 -61113278 + AluSq SINE Alu 1 282 -31 1231 236 8 8 chrX 115860868 115861135 -61113005 + AluJb SINE Alu 25 291 -21 2417 103 0 0 chrX 115861496 115861806 -61112334 + AluSx SINE Alu 1 310 -2 1749 148 101 52 chrX 115862728 115862798 -61111342 - MSTB LTR MaLR 0 426 361 2411 93 0 6 chrX 115862798 115863110 -61111030 + AluSx SINE Alu 1 310 -2 1749 148 101 52 chrX 115863110 115863444 -61110696 - MSTB LTR MaLR -65 361 2 196 385 78 0 chrX 115863668 115863860 -61110280 - L2 LINE L2 -1297 2017 1811 542 309 68 12 chrX 115863861 115864201 -61109939 - L2 LINE L2 -1068 2246 1888 1911 157 3 0 chrX 115864391 115864690 -61109450 - AluSx SINE Alu -12 300 1 1825 188 0 0 chrX 115864694 115864992 -61109148 - AluJb SINE Alu -14 298 1 2285 104 0 3 chrX 115864999 115865297 -61108843 - AluSc SINE Alu -12 297 1 2014 125 3 20 chrX 115865322 115865619 -61108521 + AluSx SINE Alu 5 296 -16 7309 117 37 60 chrX 115865619 115866307 -61107833 - HSMAR2 DNA Mariner -17 1285 583 495 122 0 0 chrX 115866307 115866381 -61107759 + MADE1 DNA Mariner 4 77 -3 7309 117 37 60 chrX 115866381 115866931 -61107209 - HSMAR2 DNA Mariner -719 583 76 2031 130 3 3 chrX 115866931 115867223 -61106917 - AluSx SINE Alu -20 292 1 7309 117 37 60 chrX 115867223 115867297 -61106843 - HSMAR2 DNA Mariner -1226 76 2 1785 176 47 14 chrX 115867307 115867670 -61106470 + THE1C LTR MaLR 1 375 0 234 341 153 29 chrX 115868056 115868226 -61105914 - L2 LINE L2 -2 3270 3080 675 159 0 0 chrX 115868483 115868596 -61105544 + AluSq/x SINE Alu 2 114 -199 1452 187 8 8 chrX 115868596 115868864 -61105276 + AluJb SINE Alu 29 296 -16 23 0 0 0 chrX 115868875 115868898 -61105242 + AT_rich Low_complexity Low_complexity 1 23 0 2258 109 0 3 chrX 115869603 115869916 -61104224 - AluSx SINE Alu 0 312 1 7969 13 19 0 chrX 115870165 115871181 -61102959 - L1PA2 LINE L1 0 6155 5135 1735 145 94 63 chrX 115871531 115871542 -61102598 - MSTA LTR MaLR 0 428 419 1891 129 50 31 chrX 115871542 115871856 -61102284 + THE1B LTR MaLR 1 324 -40 2304 118 3 0 chrX 115871856 115872162 -61101978 - AluSx SINE Alu -5 307 1 1891 129 50 31 chrX 115872162 115872204 -61101936 + THE1B LTR MaLR 324 364 0 1735 145 94 63 chrX 115872204 115872242 -61101898 - MSTA LTR MaLR -9 419 384 2281 109 0 7 chrX 115872242 115872544 -61101596 + AluSg SINE Alu 1 300 -10 2192 118 0 3 chrX 115872549 115872865 -61101275 + AluSx SINE Alu 1 315 0 1735 145 94 63 chrX 115872865 115873222 -61100918 - MSTA LTR MaLR -47 381 1 303 320 25 0 chrX 115873443 115873565 -61100575 - L2 LINE L2 -1299 2015 1891 466 288 78 30 chrX 115873622 115873893 -61100247 - L2 LINE L2 -1054 2260 1977 2285 117 0 13 chrX 115873914 115874230 -61099910 + AluSx SINE Alu 1 312 0 1167 171 10 0 chrX 115874233 115874426 -61099714 + AluSg/x SINE Alu 115 309 -1 807 189 19 15 chrX 115874430 115875018 -61099122 + GA-rich Low_complexity Low_complexity 1 590 0 1195 123 15 10 chrX 115875038 115875050 -61099090 + L1MB7 LINE L1 5814 5824 -360 1063 229 120 15 chrX 115875050 115875317 -61098823 + AluJo SINE Alu 2 296 -6 1195 123 15 10 chrX 115875317 115875508 -61098632 + L1MB7 LINE L1 5824 6018 -166 2126 112 18 0 chrX 115875508 115875811 -61098329 + AluSx SINE Alu 1 308 0 2344 93 17 0 chrX 115875813 115876113 -61098027 + AluSx SINE Alu 1 305 -7 1303 248 108 17 chrX 115876149 115876632 -61097508 - L2 LINE L2 -1483 1831 1305 1553 172 75 7 chrX 115876636 115876944 -61097196 + MER58B DNA MER1_type 4 332 -9 2419 85 3 0 chrX 115876945 115877239 -61096901 + AluSq SINE Alu 1 295 -18 236 239 49 98 chrX 115877251 115877347 -61096793 + L2 LINE L2 2618 2704 -610 1640 189 26 0 chrX 115877347 115877649 -61096491 + AluJb SINE Alu 1 310 -2 236 239 49 98 chrX 115877649 115877715 -61096425 + L2 LINE L2 2704 2772 -542 1457 175 113 81 chrX 115877823 115878054 -61096086 - L2 LINE L2 -1 3312 3090 1811 145 3 27 chrX 115878054 115878350 -61095790 - AluJb SINE Alu -23 289 1 1457 175 113 81 chrX 115878350 115878361 -61095779 - L2 LINE L2 -223 3090 3081 2183 94 0 24 chrX 115878361 115878689 -61095451 - AluSg SINE Alu 0 321 1 1457 175 113 81 chrX 115878689 115878978 -61095162 - L2 LINE L2 -232 3081 2770 1320 199 0 0 chrX 115878979 115879205 -61094935 - AluJb SINE Alu -2 310 85 1957 164 10 0 chrX 115879256 115879555 -61094585 + AluSx SINE Alu 1 302 -10 741 221 145 0 chrX 115879570 115879805 -61094335 - L2 LINE L2 -588 2726 2458 2361 107 3 0 chrX 115879869 115880177 -61093963 + AluSx SINE Alu 4 312 0 1232 155 10 0 chrX 115880281 115880488 -61093652 + MER2 DNA MER2_type 2 210 -135 722 209 0 0 chrX 115880492 115880621 -61093519 - FLAM_A SINE Alu -2 131 3 2260 110 7 16 chrX 115880651 115880961 -61093179 - AluSx SINE Alu -5 307 1 322 239 80 51 chrX 115881139 115881169 -61092971 + L2 LINE L2 3077 3105 -208 2516 57 7 3 chrX 115881169 115881467 -61092673 - AluSg SINE Alu -11 299 1 1909 146 17 10 chrX 115881472 115881767 -61092373 - AluJo SINE Alu -15 297 1 322 239 80 51 chrX 115881767 115881868 -61092272 + L2 LINE L2 3108 3218 -95 969 204 20 0 chrX 115881868 115882069 -61092071 - L1MD2 LINE L1 -2 6357 6153 1255 123 0 6 chrX 115882109 115882288 -61091852 - AluSg/x SINE Alu -1 309 132 2535 74 0 0 chrX 115882288 115882586 -61091554 - AluSx SINE Alu -13 299 2 308 237 13 0 chrX 115882587 115882663 -61091477 - L1MD2 LINE L1 -237 6122 6046 299 245 43 21 chrX 115882665 115882759 -61091381 + L2 LINE L2 3209 3304 -9 793 228 4 82 chrX 115882763 115883018 -61091122 + MIR SINE MIR 2 236 -26 516 143 0 0 chrX 115883202 115883279 -61090861 + MLT1B LTR MaLR 1 77 -313 2324 113 0 0 chrX 115883279 115883580 -61090560 + AluSx SINE Alu 1 301 -11 1249 180 90 37 chrX 115883582 115883905 -61090235 - Charlie4a DNA MER1_type -168 340 1 2324 101 0 16 chrX 115883958 115884276 -61089864 - AluSq SINE Alu 0 313 1 26 30 0 0 chrX 115886019 115886052 -61088088 + AT_rich Low_complexity Low_complexity 1 33 0 273 293 84 71 chrX 115886353 115886578 -61087562 + MIR SINE MIR 29 256 -6 2290 129 0 0 chrX 115887078 115887388 -61086752 - AluSx SINE Alu -2 310 1 1541 195 34 14 chrX 115887388 115887680 -61086460 - AluJo SINE Alu -14 298 1 710 150 0 25 chrX 115887984 115888104 -61086036 - AluJb SINE Alu -113 199 83 2295 107 10 0 chrX 115888111 115888411 -61085729 - AluSq SINE Alu -10 303 1 1713 163 13 37 chrX 115888705 115889005 -61085135 + AluJo SINE Alu 3 295 -17 979 112 0 15 chrX 115889376 115889510 -61084630 + AluSg SINE Alu 1 132 -178 295 139 0 0 chrX 115890219 115890262 -61083878 + MER3 DNA MER1_type 1 43 -166 2381 92 0 22 chrX 115890315 115890632 -61083508 - AluSg SINE Alu 0 310 1 981 84 30 0 chrX 115890698 115890829 -61083311 - AluSq/x SINE Alu -177 135 1 766 211 203 0 chrX 115890831 115891082 -61083058 + MER58B DNA MER1_type 40 341 0 224 234 104 0 chrX 115891338 115891415 -61082725 - L2 LINE L2 -4 3268 3184 2226 109 10 0 chrX 115891743 115892037 -61082103 + AluSx SINE Alu 1 297 -15 2381 95 3 13 chrX 115892177 115892492 -61081648 - AluSx SINE Alu 0 312 1 1575 152 95 4 chrX 115892602 115892866 -61081274 + AluJb SINE Alu 1 288 -24 2254 123 0 0 chrX 115893533 115893834 -61080306 + AluSx SINE Alu 1 301 -11 307 147 200 42 chrX 115893865 115893960 -61080180 + MIR SINE MIR 118 227 -35 204 268 0 22 chrX 115894196 115894252 -61079888 + MIR SINE MIR 41 94 -114 275 122 0 0 chrX 115894338 115894379 -61079761 + LTR23 LTR ERV1 320 360 -77 2215 101 0 3 chrX 115894386 115894674 -61079466 - AluSc SINE Alu -16 293 7 2246 93 47 10 chrX 115894689 115894990 -61079150 - AluSx SINE Alu 0 312 1 2084 134 0 7 chrX 115895064 115895369 -61078771 + AluJb SINE Alu 1 303 -9 438 278 45 131 chrX 115895373 115895725 -61078415 + L2 LINE L2 2939 3260 -12 2281 104 0 3 chrX 115895725 115896013 -61078127 + AluSc SINE Alu 1 287 -22 445 163 28 57 chrX 115896023 115896158 -61077982 + L1MC3 LINE L1 7677 8041 -1 1802 153 13 33 chrX 115896166 115896467 -61077673 + AluJo SINE Alu 1 295 -17 260 261 113 74 chrX 115896787 115896858 -61077282 + MIR SINE MIR 25 92 -170 2320 82 3 7 chrX 115896858 115897172 -61076968 - AluSp SINE Alu 0 313 1 260 261 113 74 chrX 115897172 115897303 -61076837 + MIR SINE MIR 92 235 -27 694 148 0 0 chrX 115897334 115897442 -61076698 + FLAM_C SINE Alu 2 109 -34 28 29 0 0 chrX 115897456 115897491 -61076649 + AT_rich Low_complexity Low_complexity 1 35 0 327 130 0 0 chrX 115897525 115897579 -61076561 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 227 217 17 0 chrX 115897595 115897655 -61076485 + GA-rich Low_complexity Low_complexity 5 65 0 301 281 70 70 chrX 115898361 115898489 -61075651 + L2 LINE L2 3134 3261 -11 693 148 0 0 chrX 115898489 115898597 -61075543 + FLAM_C SINE Alu 2 109 -34 28 29 0 0 chrX 115898611 115898646 -61075494 + AT_rich Low_complexity Low_complexity 1 35 0 850 111 0 14 chrX 115898680 115898824 -61075316 + (TTCC)n Simple_repeat Simple_repeat 3 144 0 534 261 17 0 chrX 115899069 115899188 -61074952 - L2 LINE L2 -1 3271 3151 315 0 0 0 chrX 115899202 115899237 -61074903 + (CA)n Simple_repeat Simple_repeat 2 36 0 270 220 17 0 chrX 115899324 115899383 -61074757 + MER112 DNA MER1_type 201 260 0 2419 99 0 6 chrX 115899555 115899868 -61074272 - AluSx SINE Alu -1 311 1 1053 235 108 75 chrX 115900041 115900432 -61073708 - MLT1H1 LTR MaLR 0 555 140 477 167 161 74 chrX 115900432 115900518 -61073622 + MER45A DNA AcHobo 1 78 -1503 2309 110 0 3 chrX 115900518 115900817 -61073323 - AluSx SINE Alu -14 298 1 477 167 161 74 chrX 115900817 115900892 -61073248 + MER45A DNA AcHobo 78 176 -2 1053 235 108 75 chrX 115900892 115901037 -61073103 - MLT1H1 LTR MaLR -415 140 1 369 261 85 52 chrX 115901051 115901204 -61072936 + MIR3 SINE MIR 16 173 -35 2231 125 7 0 chrX 115901278 115901583 -61072557 + AluSq SINE Alu 1 307 -6 181 276 46 35 chrX 115901770 115901857 -61072283 - L2 LINE L2 -49 3264 3177 193 325 53 37 chrX 115902125 115902313 -61071827 - L2 LINE L2 -432 2882 2692 2294 123 3 0 chrX 115902325 115902635 -61071505 + AluSx SINE Alu 1 311 -1 778 273 13 29 chrX 115902747 115902864 -61071276 - MIR SINE MIR 0 262 149 2404 88 0 0 chrX 115902864 115903158 -61070982 - AluSg1 SINE Alu -15 294 1 778 273 13 29 chrX 115903158 115903278 -61070862 - MIR SINE MIR -113 149 29 2625 65 0 0 chrX 115903464 115903770 -61070370 + AluSg SINE Alu 1 306 -4 756 265 42 46 chrX 115903790 115904073 -61070067 + L2 LINE L2 2243 2524 -790 1800 160 4 0 chrX 115904204 115904479 -61069661 - AluJb SINE Alu -14 298 23 2186 84 0 7 chrX 115904479 115904752 -61069388 + AluSx SINE Alu 27 297 -15 506 191 32 126 chrX 115904793 115905039 -61069101 - L2 LINE L2 -202 3070 2848 2205 130 0 3 chrX 115905073 115905381 -61068759 + AluJb SINE Alu 5 311 -1 296 299 37 5 chrX 115905410 115905583 -61068557 - L2 LINE L2 -1136 2178 1927 1360 169 49 81 chrX 115905593 115905639 -61068501 + MLT1A1 LTR MaLR 1 47 -318 2340 101 0 0 chrX 115905639 115905935 -61068205 + AluSx SINE Alu 1 296 -16 1360 169 49 81 chrX 115905935 115906054 -61068086 + MLT1A1 LTR MaLR 47 168 -197 2070 92 14 14 chrX 115906054 115906358 -61067782 + AluSg SINE Alu 1 304 0 1360 169 49 81 chrX 115906358 115906534 -61067606 + MLT1A1 LTR MaLR 168 333 -32 1021 74 0 0 chrX 115906535 115906657 -61067483 - AluY SINE Alu -14 297 176 280 70 23 0 chrX 115906657 115906700 -61067440 + MLT1A1 LTR MaLR 414 457 0 1538 132 55 0 chrX 115906730 115906949 -61067191 - AluSx SINE Alu -77 235 5 1433 75 0 10 chrX 115907178 115907268 -61066872 + L1PA13 LINE L1 5949 6038 -125 1770 143 52 4 chrX 115907268 115907540 -61066600 + AluSx SINE Alu 5 289 -23 1433 75 0 10 chrX 115907540 115907649 -61066491 + L1PA13 LINE L1 6038 6146 -17 2103 96 6 39 chrX 115907649 115907813 -61066327 + AluSc SINE Alu 1 152 -157 4304 80 177 36 chrX 115907813 115908537 -61065603 - LTR12 LTR ERV1 0 826 1 2103 96 6 39 chrX 115908537 115908684 -61065456 + AluSc SINE Alu 152 302 -7 268 50 0 25 chrX 115909099 115909139 -61065001 - MSTB1 LTR MaLR 0 432 394 2296 92 0 0 chrX 115909141 115909446 -61064694 + AluSx SINE Alu 1 305 0 816 172 0 0 chrX 115909453 115909581 -61064559 + FLAM_C SINE Alu 1 128 -15 1943 169 41 27 chrX 115909658 115909880 -61064260 - MSTB1 LTR MaLR -26 406 176 2324 85 3 3 chrX 115909880 115910173 -61063967 + AluSx SINE Alu 1 293 -19 1943 169 41 27 chrX 115910173 115910316 -61063824 - MSTB1 LTR MaLR -256 176 36 262 150 236 29 chrX 115910307 115910447 -61063693 - AluY SINE Alu -4 297 129 * 2258 98 3 3 chrX 115911151 115911448 -61062692 + AluSx SINE Alu 3 299 -13 2583 40 7 0 chrX 115911451 115911751 -61062389 + AluY SINE Alu 1 302 -9 3258 222 91 26 chrX 115911753 115911890 -61062250 - MSTB1-int LTR MaLR -179 1472 1345 1811 115 4 30 chrX 115911890 115912159 -61061981 - AluJo SINE Alu -6 306 45 3258 222 91 26 chrX 115912159 115912756 -61061384 - MSTB1-int LTR MaLR -306 1345 788 1778 121 4 8 chrX 115912756 115913005 -61061135 - AluSx SINE Alu -10 302 55 1870 122 61 0 chrX 115913005 115913268 -61060872 - AluSg SINE Alu -26 284 6 3258 222 91 26 chrX 115913268 115913378 -61060762 - MSTB1-int LTR MaLR -862 789 571 458 280 125 0 chrX 115913628 115913796 -61060344 - MIR SINE MIR -29 233 45 920 142 8 0 chrX 115914017 115914151 -61059989 - FRAM SINE Alu -22 154 20 199 321 120 19 chrX 115914235 115914444 -61059696 + L2 LINE L2 2642 2871 -443 2340 82 0 3 chrX 115915400 115915715 -61058425 + AluSx SINE Alu 1 314 0 1726 182 7 19 chrX 115915860 115916167 -61057973 + AluJo SINE Alu 1 303 -9 1905 146 7 3 chrX 115916563 115916850 -61057290 - AluJo SINE Alu -24 288 1 2249 120 3 0 chrX 115916879 115917180 -61056960 + AluSx SINE Alu 4 305 -7 2125 93 19 64 chrX 115917187 115917498 -61056642 + AluSg SINE Alu 1 297 -13 252 0 0 0 chrX 115919605 115919633 -61054507 + (GGA)n Simple_repeat Simple_repeat 2 29 0 693 227 129 0 chrX 115920862 115921025 -61053115 - MIR SINE MIR -18 244 61 200 274 21 84 chrX 115922460 115922489 -61051651 - MIR3 SINE MIR -10 198 169 2424 64 20 3 chrX 115922489 115922787 -61051353 + AluY SINE Alu 1 303 -8 200 274 21 84 chrX 115922787 115922852 -61051288 - MIR3 SINE MIR -39 169 110 2034 134 20 7 chrX 115923192 115923498 -61050642 - AluSx SINE Alu -2 310 1 205 303 9 18 chrX 115923616 115923725 -61050415 + (TATG)n Simple_repeat Simple_repeat 3 110 0 1046 70 8 0 chrX 115924345 115924474 -61049666 - FLAM_C SINE Alu -2 131 2 270 0 0 0 chrX 115924483 115924513 -61049627 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2100 117 0 0 chrX 115924517 115924791 -61049349 - AluSx SINE Alu -37 275 2 384 265 65 59 chrX 115925028 115925198 -61048942 - MIR SINE MIR -46 216 46 1590 153 109 50 chrX 115925432 115925563 -61048577 + L1MB7 LINE L1 5676 5798 -386 2182 95 0 60 chrX 115925563 115925705 -61048435 + AluSx SINE Alu 1 115 -197 2167 136 0 0 chrX 115925705 115926007 -61048133 + AluSx SINE Alu 2 303 -9 2182 95 0 60 chrX 115926007 115926181 -61047959 + AluSx SINE Alu 115 298 -14 2577 59 0 0 chrX 115926181 115926488 -61047652 + AluY SINE Alu 1 307 -4 1590 153 109 50 chrX 115926488 115926742 -61047398 + L1MB7 LINE L1 5797 6078 -106 3959 145 16 127 chrX 115926742 115928295 -61045845 + pTR5 LTR ERV1 745 2605 -1 633 90 0 72 chrX 115928295 115928363 -61045777 + L1MB8 LINE L1 6070 6129 -49 2013 138 3 0 chrX 115928363 115928653 -61045487 + AluSq SINE Alu 2 292 -21 633 90 0 72 chrX 115928653 115928695 -61045445 + L1MB8 LINE L1 6129 6172 -6 408 250 105 16 chrX 115928742 115928866 -61045274 - MIR SINE MIR -126 136 2 259 246 0 0 chrX 115928902 115928963 -61045177 - MIR SINE MIR -2 260 200 1100 131 0 6 chrX 115929009 115929169 -61044971 - AluJ SINE Alu -7 295 137 2165 98 35 3 chrX 115929172 115929459 -61044681 - AluSq SINE Alu -17 296 1 282 159 16 48 chrX 115929459 115929515 -61044625 - AluJ SINE Alu -161 141 88 4595 218 75 71 chrX 115929515 115929820 -61044320 - Charlie7 DNA MER1_type -3 2609 2307 1991 139 7 0 chrX 115929820 115930108 -61044032 - AluJb SINE Alu -11 301 12 4595 218 75 71 chrX 115930108 115930159 -61043981 - Charlie7 DNA MER1_type -305 2307 2258 2294 101 7 0 chrX 115930159 115930457 -61043683 + AluSx SINE Alu 1 300 -12 4595 218 75 71 chrX 115930457 115931079 -61043061 - Charlie7 DNA MER1_type -354 2258 1640 2271 113 0 7 chrX 115931079 115931381 -61042759 + AluSq SINE Alu 1 300 -13 4595 218 75 71 chrX 115931381 115931528 -61042612 - Charlie7 DNA MER1_type -972 1640 1495 2066 101 7 45 chrX 115931528 115931836 -61042304 + AluSx SINE Alu 1 296 -16 4595 218 75 71 chrX 115931836 115931860 -61042280 - Charlie7 DNA MER1_type -1117 1495 1473 2013 147 3 0 chrX 115931860 115932153 -61041987 + AluSx SINE Alu 2 295 -17 4595 218 75 71 chrX 115932153 115932445 -61041695 - Charlie7 DNA MER1_type -1139 1473 1184 1759 171 0 20 chrX 115932445 115932749 -61041391 + AluJo SINE Alu 1 298 -14 4595 218 75 71 chrX 115932749 115933176 -61040964 - Charlie7 DNA MER1_type -1428 1184 729 547 171 76 44 chrX 115933201 115933258 -61040882 - L1ME3A LINE L1 -14 6156 6102 1695 108 0 5 chrX 115933258 115933481 -61040659 - AluSq SINE Alu -9 304 83 547 171 76 44 chrX 115933481 115933581 -61040559 - L1ME3A LINE L1 -68 6102 5994 1092 202 117 18 chrX 115933581 115933620 -61040520 - MLT1G3 LTR MaLR -2 588 554 1984 145 0 30 chrX 115933620 115933924 -61040216 - AluSx SINE Alu -17 295 1 1092 202 117 18 chrX 115933924 115934348 -61039792 - MLT1G3 LTR MaLR -36 554 2 432 263 8 0 chrX 115934402 115934520 -61039620 - Charlie7 DNA MER1_type -1876 736 618 2082 60 32 49 chrX 115934521 115934841 -61039299 + AluY SINE Alu 1 315 0 23 0 0 0 chrX 115934887 115934910 -61039230 + AT_rich Low_complexity Low_complexity 1 23 0 2048 133 3 7 chrX 115934926 115935227 -61038913 - AluJo SINE Alu -12 300 1 2697 55 0 0 chrX 115935248 115935559 -61038581 - AluY SINE Alu 0 311 1 2152 130 0 3 chrX 115935559 115935860 -61038280 - AluSc SINE Alu -9 300 1 903 182 5 71 chrX 115935868 115935962 -61038178 - MIR SINE MIR -24 238 139 2404 105 36 36 chrX 115935962 115936025 -61038115 - THE1B LTR MaLR -2 362 300 2331 128 0 0 chrX 115936025 115936337 -61037803 + AluSx SINE Alu 1 312 0 2404 105 36 36 chrX 115936337 115936635 -61037505 - THE1B LTR MaLR -63 301 1 903 182 5 71 chrX 115936635 115936805 -61037335 - MIR SINE MIR -123 139 23 2264 116 0 3 chrX 115937030 115937324 -61036816 - AluSg SINE Alu -17 293 1 2122 88 3 47 chrX 115937327 115937659 -61036481 - AluSq SINE Alu 0 319 1 2637 50 0 0 chrX 115937850 115938152 -61035988 - AluY SINE Alu -9 302 1 2397 94 3 0 chrX 115938428 115938727 -61035413 + AluSq SINE Alu 1 300 -13 629 234 208 38 chrX 115939492 115939757 -61034383 + L3 LINE CR1 986 1295 -282 481 305 28 6 chrX 115939758 115939936 -61034204 + MIR SINE MIR 3 182 -59 2310 58 41 14 chrX 115939975 115940270 -61033870 + AluY SINE Alu 1 303 -8 951 310 4 4 chrX 115940320 115940588 -61033552 + L3 LINE CR1 1297 1564 -13 2483 70 3 25 chrX 115940594 115940910 -61033230 - AluSp SINE Alu -4 309 1 2161 123 0 17 chrX 115940911 115941211 -61032929 - AluSx SINE Alu -17 295 1 713 148 0 0 chrX 115941214 115941322 -61032818 - AluY SINE Alu 0 311 204 1034 126 0 0 chrX 115941322 115941465 -61032675 - AluSq/x SINE Alu -169 143 1 1786 117 40 60 chrX 115941472 115941771 -61032369 - AluSc SINE Alu -16 293 1 459 331 27 20 chrX 115941836 115941984 -61032156 + MIR SINE MIR 17 165 -97 2106 128 24 0 chrX 115943293 115943589 -61030551 + AluSx SINE Alu 1 303 -9 576 241 7 35 chrX 115943640 115943781 -61030359 + MIR SINE MIR 56 192 -70 2259 60 35 7 chrX 115943798 115944082 -61030058 - AluY SINE Alu -19 292 1 2391 69 0 26 chrX 115944082 115944387 -61029753 - AluY SINE Alu -14 297 1 2246 117 7 0 chrX 115944389 115944687 -61029453 - AluSx SINE Alu -12 300 1 395 162 15 0 chrX 115944695 115944763 -61029377 - MLT1C LTR MaLR -170 297 229 1309 117 17 0 chrX 115944763 115944942 -61029198 - AluSg/x SINE Alu -10 302 121 2081 112 36 3 chrX 115944955 115945258 -61028882 - AluSq SINE Alu 0 313 1 499 189 77 59 chrX 115945258 115945427 -61028713 - MLT1C LTR MaLR -233 234 63 444 175 17 92 chrX 115945473 115945496 -61028644 - MER45 DNA AcHobo -924 116 93 2350 102 0 0 chrX 115945496 115945789 -61028351 + AluSg SINE Alu 1 293 -17 444 175 17 92 chrX 115945789 115945885 -61028255 - MER45 DNA AcHobo -947 93 6 1243 254 54 55 chrX 115945889 115946448 -61027692 + L2 LINE L2 1886 2510 -804 1066 254 98 49 chrX 115946450 115946990 -61027150 + L2 LINE L2 2751 3313 0 404 298 41 23 chrX 115946989 115947160 -61026980 + L2 LINE L2 2872 3045 -227 * 2617 71 3 0 chrX 115947190 115947500 -61026640 + AluSp SINE Alu 1 311 -2 216 0 0 0 chrX 115947544 115947568 -61026572 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2215 104 3 0 chrX 115947672 115947959 -61026181 - AluSg SINE Alu -22 288 1 473 257 74 64 chrX 115948196 115948398 -61025742 + MIR SINE MIR 57 260 -2 241 180 39 33 chrX 115948493 115948583 -61025557 - MIR SINE MIR -94 114 44 196 197 0 148 chrX 115948572 115948633 -61025507 - MIR SINE MIR -11 251 200 * 1424 139 0 9 chrX 115948647 115948862 -61025278 - AluJb SINE Alu -15 297 85 2425 113 96 5 chrX 115948891 115949309 -61024831 + LTR56 LTR ERV1 10 437 0 446 250 132 4 chrX 115949309 115949457 -61024683 - MIR SINE MIR -61 147 9 1812 104 0 0 chrX 115949678 115949909 -61024231 - AluSx SINE Alu -81 231 1 2414 82 0 3 chrX 115949931 115950225 -61023915 + AluSg SINE Alu 1 293 -17 2096 50 99 39 chrX 115950225 115950508 -61023632 + AluY SINE Alu 1 300 -11 344 215 131 0 chrX 115951214 115951321 -61022819 - L1ME4a LINE L1 -4 6117 5997 1878 142 7 11 chrX 115951335 115951660 -61022480 - AluSx SINE Alu 0 324 1 2457 74 3 3 chrX 115951666 115951965 -61022175 - AluSx SINE Alu -13 299 1 2480 86 0 3 chrX 115952099 115952413 -61021727 - AluSp SINE Alu 0 313 1 23 33 0 0 chrX 115952428 115952458 -61021682 + AT_rich Low_complexity Low_complexity 1 30 0 689 178 0 9 chrX 115952467 115952574 -61021566 - FLAM_A SINE Alu -33 109 4 2250 104 3 3 chrX 115952750 115953049 -61021091 - AluSx SINE Alu -13 299 1 294 243 14 68 chrX 115953054 115953180 -61020960 - L1ME4a LINE L1 -218 5903 5784 2128 86 0 14 chrX 115953180 115953486 -61020654 - AluSc SINE Alu 0 306 5 294 243 14 68 chrX 115953486 115953506 -61020634 - L1ME4a LINE L1 -337 5784 5764 2132 153 71 29 chrX 115953507 115953918 -61020222 + MSTA LTR MaLR 1 428 0 1089 145 54 0 chrX 115953931 115954097 -61020043 - AluJo/FRAM SINE Alu -4 308 134 2123 135 0 0 chrX 115954097 115954394 -61019746 - AluSx SINE Alu -15 297 1 770 165 8 16 chrX 115954421 115954542 -61019598 + FLAM_C SINE Alu 2 121 -22 266 26 53 0 chrX 115954542 115954580 -61019560 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2118 116 3 10 chrX 115954586 115954878 -61019262 + AluSg SINE Alu 1 290 -20 791 161 0 0 chrX 115954881 115954999 -61019141 - AluJo/FLAM SINE Alu -189 123 6 557 292 75 7 chrX 115955007 115955314 -61018826 - L1ME4a LINE L1 -362 5759 5414 995 317 107 20 chrX 115955333 115955567 -61018573 - L2 LINE L2 0 3313 3101 2389 109 0 0 chrX 115955567 115955870 -61018270 + AluSx SINE Alu 2 304 -8 995 317 107 20 chrX 115955870 115956357 -61017783 - L2 LINE L2 -212 3101 2544 2424 122 74 45 chrX 115956390 115956795 -61017345 + MSTB2 LTR MaLR 1 422 -35 1927 96 78 32 chrX 115956795 115957077 -61017063 - AluSg SINE Alu -15 295 1 2424 122 74 45 chrX 115957077 115957115 -61017025 + MSTB2 LTR MaLR 422 457 0 5331 189 42 112 chrX 115957320 115957369 -61016771 - L1MB7 LINE L1 -2 6182 6131 2410 74 7 0 chrX 115957369 115957666 -61016474 - AluSp SINE Alu -14 299 1 5331 189 42 112 chrX 115957666 115957993 -61016147 - L1MB7 LINE L1 -53 6131 5783 2323 124 0 0 chrX 115957993 115958299 -61015841 - AluSx SINE Alu -6 306 1 5331 189 42 112 chrX 115958299 115959128 -61015012 - L1MB7 LINE L1 -401 5783 4897 2059 156 0 3 chrX 115959128 115959435 -61014705 - AluJb SINE Alu -6 306 1 5331 189 42 112 chrX 115959435 115959483 -61014657 - L1MB7 LINE L1 -1287 4897 4847 1785 139 0 49 chrX 115959483 115959770 -61014370 - AluJo SINE Alu -39 273 1 5331 189 42 112 chrX 115959770 115959896 -61014244 - L1MB7 LINE L1 -1337 4847 4714 1642 151 163 19 chrX 115959896 115960215 -61013925 + MLT1A1 LTR MaLR 1 365 0 5331 189 42 112 chrX 115960215 115960639 -61013501 - L1MB7 LINE L1 -1470 4714 4262 2175 143 0 0 chrX 115960639 115960947 -61013193 - AluSx SINE Alu -4 308 1 5331 189 42 112 chrX 115960947 115961521 -61012619 - L1MB7 LINE L1 -1922 4262 3649 925 154 0 0 chrX 115961521 115961657 -61012483 - FLAM_C SINE Alu -2 141 6 5331 189 42 112 chrX 115961657 115962160 -61011980 - L1MB7 LINE L1 -2535 3649 3112 2268 109 0 7 chrX 115962160 115962454 -61011686 + AluSg SINE Alu 1 292 -18 5331 189 42 112 chrX 115962454 115962855 -61011285 - L1MB7 LINE L1 -3072 3112 3071 957 125 0 0 chrX 115962855 115962983 -61011157 - FLAM_C SINE Alu -5 128 1 5331 189 42 112 chrX 115962983 115963428 -61010712 - L1MB7 LINE L1 -3113 3071 2596 405 274 32 51 chrX 115963629 115963786 -61010354 + L2 LINE L2 2865 3018 -254 1839 159 0 10 chrX 115963888 115964177 -61009963 + AluJb SINE Alu 5 290 -22 2297 92 0 16 chrX 115964198 115964502 -61009638 + AluSg1 SINE Alu 1 299 -10 1988 89 0 30 chrX 115964512 115964782 -61009358 + AluSg SINE Alu 49 310 0 2270 98 10 3 chrX 115964804 115965101 -61009039 + AluSc SINE Alu 1 299 -10 2505 62 3 16 chrX 115965101 115965409 -61008731 + AluY SINE Alu 1 304 -7 2178 118 0 0 chrX 115966245 115966690 -61007450 - AluSg SINE Alu 0 447 3 318 248 108 39 chrX 115966702 115966831 -61007309 - L1MB7 LINE L1 -1 6183 6046 189 74 0 0 chrX 115966853 115966880 -61007260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1231 113 0 0 chrX 115966882 115967041 -61007099 - AluSg SINE Alu -31 279 121 535 76 0 0 chrX 115967044 115967110 -61007030 - AluSg SINE Alu -244 67 2 2310 97 0 0 chrX 115967222 115967520 -61006620 - AluY SINE Alu -13 298 1 2383 109 0 0 chrX 115968482 115968784 -61005356 + AluSg SINE Alu 1 302 -8 548 330 77 35 chrX 115969098 115969383 -61004757 + L2 LINE L2 2976 3272 0 1949 129 23 10 chrX 115969826 115970129 -61004011 + AluJo SINE Alu 1 307 -5 1622 139 8 19 chrX 115970136 115970394 -61003746 + AluJb SINE Alu 2 256 -56 520 145 0 0 chrX 115970313 115970396 -61003744 + AluJo/FRAM SINE Alu 176 258 -54 2306 98 0 0 chrX 115970502 115970797 -61003343 + AluSg SINE Alu 1 295 -15 241 323 8 8 chrX 115971090 115971214 -61002926 + L1P LINE L1 5255 5378 -773 621 213 0 37 chrX 115971278 115971414 -61002726 - MER63 DNA MER1_type -78 758 2 2353 285 81 61 chrX 115971417 115971490 -61002650 + L2 LINE L2 1623 1693 -1620 2145 147 0 0 chrX 115971490 115971802 -61002338 - AluSx SINE Alu 0 312 1 2353 285 81 61 chrX 115971802 115972088 -61002052 + L2 LINE L2 1693 1972 -1341 974 104 0 15 chrX 115972088 115972222 -61001918 - FLAM_C SINE Alu -1 132 1 2353 285 81 61 chrX 115972222 115973102 -61001038 + L2 LINE L2 1972 2893 -420 1920 149 6 50 chrX 115973102 115973424 -61000716 - AluJo SINE Alu 0 312 5 2353 285 81 61 chrX 115973424 115973854 -61000286 + L2 LINE L2 2893 3313 0 2019 174 88 72 chrX 115973955 115974142 -60999998 + MLT2B1 LTR ERVL 1 184 -336 1635 168 0 43 chrX 115974142 115974446 -60999694 + AluJo SINE Alu 1 291 -21 2019 174 88 72 chrX 115974446 115974521 -60999619 + MLT2B1 LTR ERVL 184 256 -264 2327 101 0 0 chrX 115974521 115974818 -60999322 - AluSx SINE Alu -15 297 1 2019 174 88 72 chrX 115974818 115975066 -60999074 + MLT2B1 LTR ERVL 256 520 0 2506 88 0 0 chrX 115975353 115975660 -60998480 - AluSc SINE Alu -2 307 1 2366 84 0 7 chrX 115975660 115975957 -60998183 - AluSc SINE Alu -14 295 1 264 225 75 42 chrX 115976144 115976264 -60997876 - L1ME3A LINE L1 -5 6165 6042 294 29 0 0 chrX 115976332 115976367 -60997773 + (TG)n Simple_repeat Simple_repeat 2 36 0 276 135 19 0 chrX 115976440 115976492 -60997648 - L1PA16 LINE L1 -21 6145 6093 2398 91 0 7 chrX 115976502 115976809 -60997331 - AluSx SINE Alu -1 311 7 273 297 8 162 chrX 115977058 115977124 -60997016 + L2 LINE L2 2601 2676 -638 1859 89 0 8 chrX 115977124 115977359 -60996781 - AluSc SINE Alu -76 233 1 273 297 8 162 chrX 115977359 115977469 -60996671 + L2 LINE L2 2676 2725 -589 565 288 22 11 chrX 115977469 115977653 -60996487 - MER5A DNA MER1_type 0 189 4 273 297 8 162 chrX 115977653 115977741 -60996399 + L2 LINE L2 2725 2825 -489 358 237 22 152 chrX 115977757 115977846 -60996294 + L2 LINE L2 2563 2662 -652 960 186 19 0 chrX 115977846 115978002 -60996138 - FRAM SINE Alu -7 159 1 358 237 22 152 chrX 115978002 115978082 -60996058 + L2 LINE L2 2662 2699 -615 2253 118 0 0 chrX 115978082 115978378 -60995762 + AluSx SINE Alu 1 296 -16 358 237 22 152 chrX 115978378 115978431 -60995709 + L2 LINE L2 2699 2757 -557 207 0 0 0 chrX 115978821 115978844 -60995296 + (T)n Simple_repeat Simple_repeat 1 23 0 460 330 119 44 chrX 115978968 115979398 -60994742 + L2 LINE L2 2810 3271 -1 1958 103 48 106 chrX 115979412 115979623 -60994517 - THE1C LTR MaLR 0 375 196 2201 128 0 0 chrX 115979623 115979919 -60994221 + AluSx SINE Alu 1 296 -16 1958 103 48 106 chrX 115979919 115980104 -60994036 - THE1C LTR MaLR -179 196 2 982 198 39 0 chrX 115980335 115980517 -60993623 - MER5A DNA MER1_type 0 189 1 245 29 29 0 chrX 115980691 115980725 -60993415 + (TTTTC)n Simple_repeat Simple_repeat 5 39 0 2204 91 35 3 chrX 115980744 115981029 -60993111 - AluSx SINE Alu -18 294 1 272 229 115 0 chrX 115981454 115981515 -60992625 - L2 LINE L2 0 3272 3205 1917 114 49 52 chrX 115981748 115982056 -60992084 + AluSg1 SINE Alu 1 307 -2 402 278 12 6 chrX 115982194 115982363 -60991777 + (CA)n Simple_repeat Simple_repeat 2 171 0 25 31 0 0 chrX 115985241 115985273 -60988867 + GC_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chrX 115985650 115985677 -60988463 + GC_rich Low_complexity Low_complexity 1 27 0 2488 78 0 3 chrX 115987383 115987691 -60986449 - AluSg SINE Alu -3 307 1 432 55 0 0 chrX 115987745 115987800 -60986340 + (TG)n Simple_repeat Simple_repeat 1 55 0 2463 81 0 0 chrX 115988105 115988400 -60985740 + AluSg SINE Alu 1 295 -15 1857 100 40 0 chrX 115988400 115988649 -60985491 + AluY SINE Alu 43 301 -10 263 340 65 15 chrX 115988785 115988985 -60985155 - L2 LINE L2 -1071 2243 2034 2250 108 3 0 chrX 115988994 115989290 -60984850 + AluSx SINE Alu 1 297 -15 2357 96 0 19 chrX 115989574 115989888 -60984252 - AluY SINE Alu -3 308 1 2243 93 6 47 chrX 115989962 115990284 -60983856 - AluSx SINE Alu -3 309 1 2235 116 0 7 chrX 115990856 115991159 -60982981 + AluSx SINE Alu 1 301 -11 771 224 42 95 chrX 115991217 115991480 -60982660 + MIR SINE MIR 13 261 -1 268 364 33 7 chrX 115991542 115991693 -60982447 - L2 LINE L2 -1345 1969 1815 1031 287 68 24 chrX 115991701 115992871 -60981269 + L1MC4a LINE L1 4778 6017 -104 2487 60 0 7 chrX 115992887 115993187 -60980953 - AluY SINE Alu -13 298 1 1911 168 3 3 chrX 115993224 115993522 -60980618 + AluJo SINE Alu 7 304 -8 184 362 0 0 chrX 115993721 115993768 -60980372 - L2 LINE L2 -24 3289 3243 1110 179 0 0 chrX 115993785 115993975 -60980165 - AluSg/x SINE Alu -3 307 118 348 252 84 90 chrX 115994031 115994287 -60979853 - L1M4c LINE L1 -2886 3496 954 200 284 15 0 chrX 115994491 115994558 -60979582 + L2 LINE L2 2677 2744 -570 2183 100 27 7 chrX 115994636 115994936 -60979204 + AluSx SINE Alu 1 306 -6 2684 30 3 0 chrX 115995338 115995639 -60978501 - AluY SINE Alu -9 302 1 1850 139 0 21 chrX 115995639 115995927 -60978213 - AluJb SINE Alu -30 282 1 566 326 88 13 chrX 115996826 115997053 -60977087 - MIR SINE MIR -17 245 2 1914 143 3 7 chrX 115997098 115997385 -60976755 - AluJo SINE Alu -21 291 6 2298 97 0 7 chrX 115997398 115997698 -60976442 - AluSq SINE Alu -15 298 1 271 291 217 0 chrX 115997726 115997901 -60976239 - MIR SINE MIR -10 252 40 958 108 0 8 chrX 115998824 115998953 -60975187 - FLAM_C SINE Alu -5 128 1 329 318 62 47 chrX 115999104 115999306 -60974834 - MIR SINE MIR -62 146 1 2514 57 0 13 chrX 115999401 115999702 -60974438 + AluY SINE Alu 1 297 -14 2057 105 88 0 chrX 116000008 116000293 -60973847 - AluSx SINE Alu -2 310 1 1456 177 85 18 chrX 116000506 116000789 -60973351 - AluJb SINE Alu -10 302 1 1264 139 0 0 chrX 116002092 116002265 -60971875 - AluJb SINE Alu -11 301 129 467 36 0 0 chrX 116002291 116002347 -60971793 + AluY SINE Alu 2 57 -256 2403 97 0 0 chrX 116002449 116002757 -60971383 - AluSg SINE Alu -2 308 1 518 82 0 0 chrX 116002758 116002831 -60971309 - L1M4 LINE L1 -393 5781 5709 807 271 49 35 chrX 116002854 116003138 -60971002 + L2 LINE L2 2873 3160 -153 1974 202 72 0 chrX 116003155 116003601 -60970539 - Charlie4a DNA MER1_type -17 491 14 268 342 102 34 chrX 116003705 116003971 -60970169 - L2 LINE L2 -2799 515 232 245 313 0 0 chrX 116004037 116004101 -60970039 - L2 LINE L2 -33 3239 3176 624 174 0 0 chrX 116004566 116004664 -60969476 + AluSg/x SINE Alu 193 290 -19 2029 126 3 3 chrX 116005268 116005576 -60968564 - AluSx SINE Alu 0 308 1 230 333 133 43 chrX 116005893 116006217 -60967923 - L2 LINE L2 -89 3183 2831 556 242 7 28 chrX 116006925 116007068 -60967072 - MIR SINE MIR -62 146 36 2488 81 0 0 chrX 116007140 116007437 -60966703 + AluSx SINE Alu 1 297 -15 1857 100 40 0 chrX 116007437 116007686 -60966454 + AluY SINE Alu 43 301 -10 2462 89 0 13 chrX 116008430 116008744 -60965396 - AluSg SINE Alu 0 310 1 460 261 26 0 chrX 116009067 116009182 -60964958 - L2 LINE L2 0 3272 3155 2560 63 3 0 chrX 116009622 116009922 -60964218 + AluY SINE Alu 1 301 -10 284 85 43 0 chrX 116009929 116009976 -60964164 + GA-rich Low_complexity Low_complexity 1 49 0 716 249 6 12 chrX 116011535 116011704 -60962436 + MIR3 SINE MIR 41 208 0 2359 104 0 7 chrX 116012380 116012688 -60961452 + AluSx SINE Alu 1 306 -6 21 57 0 0 chrX 116012888 116012923 -60961217 + AT_rich Low_complexity Low_complexity 1 35 0 2338 98 0 16 chrX 116012926 116013233 -60960907 + AluSx SINE Alu 1 302 -10 608 267 162 10 chrX 116013441 116013744 -60960396 - L1ME4a LINE L1 -2 6119 5771 2152 138 0 0 chrX 116013888 116014200 -60959940 - AluSx SINE Alu 0 312 1 1997 148 7 0 chrX 116015108 116015399 -60958741 - AluJb SINE Alu -2 310 18 546 262 33 14 chrX 116015449 116015659 -60958481 - L1MC4a LINE L1 -1927 5881 5668 1216 121 0 0 chrX 116016174 116016339 -60957801 - AluSg/x SINE Alu -14 296 132 2122 113 7 0 chrX 116016676 116016984 -60957156 - AluSp SINE Alu 0 310 1 1051 228 51 8 chrX 116017897 116018134 -60956006 + MIR SINE MIR 15 261 -1 2123 115 4 0 chrX 116018500 116018779 -60955361 - AluJo SINE Alu -26 286 7 21 0 0 0 chrX 116018786 116018807 -60955333 + AT_rich Low_complexity Low_complexity 1 21 0 599 168 0 0 chrX 116018857 116018952 -60955188 - AluSg/x SINE Alu 0 310 216 2131 89 92 3 chrX 116018981 116019263 -60954877 + AluSx SINE Alu 1 307 -5 988 192 0 90 chrX 116020364 116020422 -60953718 + AluJb SINE Alu 87 149 -163 2281 98 3 0 chrX 116020422 116020717 -60953423 + AluSp SINE Alu 1 296 -17 988 192 0 90 chrX 116020717 116020903 -60953237 + AluJb SINE Alu 149 309 -3 325 114 34 52 chrX 116020906 116021042 -60953098 + GA-rich Low_complexity Low_complexity 1 133 0 1179 119 0 24 chrX 116021128 116021296 -60952844 - AluJb SINE Alu -16 296 133 340 146 125 83 chrX 116022478 116022545 -60951595 + MSTD LTR MaLR 1 75 -353 2445 76 0 13 chrX 116022545 116022680 -60951460 + AluSc SINE Alu 1 136 -173 2333 90 3 0 chrX 116022680 116022970 -60951170 + AluSp SINE Alu 3 293 -20 2445 76 0 13 chrX 116022970 116023138 -60951002 + AluSc SINE Alu 136 300 -9 340 146 125 83 chrX 116023138 116023166 -60950974 + MSTD LTR MaLR 75 100 -328 1712 101 0 0 chrX 116023167 116023386 -60950754 + AluSx SINE Alu 1 219 -93 309 26 0 0 chrX 116023449 116023487 -60950653 + (A)n Simple_repeat Simple_repeat 1 38 0 739 181 35 125 chrX 116023650 116023697 -60950443 + MSTD LTR MaLR 93 143 -253 2378 68 0 17 chrX 116023697 116023990 -60950150 - AluSg1 SINE Alu -21 288 1 739 181 35 125 chrX 116023990 116024222 -60949918 + MSTD LTR MaLR 143 396 0 283 316 88 15 chrX 116024804 116024940 -60949200 + MIR SINE MIR 87 232 -30 545 276 97 16 chrX 116026042 116026227 -60947913 + MIR SINE MIR 50 249 -13 732 116 16 16 chrX 116026353 116026474 -60947666 - AluSg/x SINE Alu -4 308 188 416 315 91 0 chrX 116026474 116026617 -60947523 + L2 LINE L2 3117 3272 0 247 209 0 0 chrX 116026988 116027031 -60947109 - L2 LINE L2 -7 3306 3264 274 287 51 45 chrX 116027057 116027214 -60946926 + L2 LINE L2 3146 3303 -10 231 286 0 0 chrX 116028162 116028225 -60945915 + L1ME3A LINE L1 5693 5755 -604 1192 38 0 0 chrX 116028238 116028369 -60945771 + AluSc SINE Alu 1 131 -178 2204 105 20 29 chrX 116028445 116028751 -60945389 + AluSx SINE Alu 1 303 -9 254 307 107 0 chrX 116028920 116029070 -60945070 + L1ME3A LINE L1 5990 6155 -15 412 282 56 72 chrX 116030285 116030480 -60943660 + L2 LINE L2 445 636 -2678 298 254 0 0 chrX 116030483 116030538 -60943602 + MIR SINE MIR 39 93 -169 468 309 97 80 chrX 116030554 116030865 -60943275 + L2 LINE L2 2952 3267 -5 1410 56 0 0 chrX 116030865 116031045 -60943095 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 1209 343 78 28 chrX 116032588 116033411 -60940729 + L2 LINE L2 1612 2475 -839 2445 107 0 0 chrX 116033495 116033805 -60940335 - AluSx SINE Alu -2 310 1 234 278 11 56 chrX 116033838 116033928 -60940212 + L2 LINE L2 2664 2749 -565 2369 86 0 7 chrX 116034145 116034447 -60939693 - AluSx SINE Alu -12 300 1 233 318 16 78 chrX 116034487 116034616 -60939524 + L2 LINE L2 3143 3263 -9 733 246 39 11 chrX 116034652 116034831 -60939309 + MIR3 SINE MIR 1 184 -24 2783 107 62 0 chrX 116035185 116035604 -60938536 + L1PA10 LINE L1 5465 5909 -259 2344 121 0 0 chrX 116035604 116035910 -60938230 + AluSx SINE Alu 1 306 -6 2589 37 0 3 chrX 116036036 116036330 -60937810 + AluY SINE Alu 1 293 -18 1623 147 79 18 chrX 116036337 116036471 -60937669 + AluJo SINE Alu 4 128 -184 2341 113 0 6 chrX 116036471 116036782 -60937358 + AluSg SINE Alu 1 309 -1 1623 147 79 18 chrX 116036782 116036926 -60937214 + AluJo SINE Alu 128 299 -13 2456 94 0 0 chrX 116037052 116037361 -60936779 + AluY SINE Alu 1 309 -2 2054 97 15 0 chrX 116037623 116037891 -60936249 - AluSg SINE Alu -12 298 27 330 89 0 0 chrX 116037915 116037960 -60936180 - AluSg SINE Alu -257 45 1 595 202 30 99 chrX 116038223 116038394 -60935746 + MIR SINE MIR 74 228 -34 2197 112 0 0 chrX 116038394 116038681 -60935459 - AluSx SINE Alu -12 300 14 595 202 30 99 chrX 116038681 116038713 -60935427 + MIR SINE MIR 228 261 -1 218 283 17 0 chrX 116039489 116039549 -60934591 + GA-rich Low_complexity Low_complexity 5 65 0 1859 122 53 43 chrX 116039582 116039726 -60934414 + AluSx SINE Alu 1 142 -170 2589 57 0 3 chrX 116039726 116040027 -60934113 + AluY SINE Alu 1 300 -11 1833 99 0 0 chrX 116040027 116040258 -60933882 + AluSg/x SINE Alu 71 303 -7 1859 122 53 43 chrX 116040258 116040415 -60933725 + AluSx SINE Alu 141 306 -6 2233 97 40 3 chrX 116040443 116040743 -60933397 + AluSx SINE Alu 1 311 -1 2253 115 7 0 chrX 116041545 116041840 -60932300 + AluSx SINE Alu 1 297 -15 2001 141 3 29 chrX 116042681 116042987 -60931153 + AluJb SINE Alu 1 298 -14 2179 108 0 10 chrX 116043519 116043815 -60930325 + AluSq SINE Alu 1 293 -20 2431 65 3 7 chrX 116044057 116044394 -60929746 + AluSp SINE Alu 1 313 0 2356 104 0 3 chrX 116044660 116044968 -60929172 - AluSx SINE Alu -2 310 4 691 209 82 37 chrX 116045058 116045326 -60928814 - L1MC5 LINE L1 -120 7841 7562 239 319 0 14 chrX 116045664 116045733 -60928407 + L2 LINE L2 3223 3290 -23 214 25 25 50 chrX 116046462 116046502 -60927638 + (TTTTTG)n Simple_repeat Simple_repeat 6 44 0 250 241 35 23 chrX 116046502 116046589 -60927551 - MIR SINE MIR -55 207 120 890 103 0 0 chrX 116046589 116046706 -60927434 + AluJb SINE Alu 1 117 -195 22 0 0 0 chrX 116046707 116046729 -60927411 + AT_rich Low_complexity Low_complexity 1 22 0 2367 98 0 0 chrX 116046736 116047032 -60927108 + AluSx SINE Alu 1 296 -16 558 0 0 0 chrX 116047033 116047095 -60927045 + (CA)n Simple_repeat Simple_repeat 2 63 0 216 267 114 23 chrX 116047097 116047185 -60926955 + MIR SINE MIR 53 147 -62 214 122 0 41 chrX 116047537 116047586 -60926554 + (TGG)n Simple_repeat Simple_repeat 2 48 0 2262 89 3 7 chrX 116047621 116047923 -60926217 + AluSq SINE Alu 1 301 -12 2583 64 0 3 chrX 116047924 116048236 -60925904 + AluY SINE Alu 1 311 0 189 0 0 0 chrX 116050357 116050378 -60923762 + (A)n Simple_repeat Simple_repeat 1 21 0 383 336 16 0 chrX 116050740 116050862 -60923278 - MIR SINE MIR -57 151 28 195 330 19 28 chrX 116051037 116051143 -60922997 + MER5A DNA MER1_type 80 184 -5 417 39 0 0 chrX 116051394 116051445 -60922695 + (CA)n Simple_repeat Simple_repeat 2 52 0 1986 89 8 0 chrX 116053648 116053906 -60920234 + AluSp SINE Alu 48 307 -6 2343 113 0 0 chrX 116054065 116054366 -60919774 + AluSx SINE Alu 1 301 -11 998 172 56 37 chrX 116054391 116054606 -60919534 - MER20 DNA MER1_type 0 219 1 1907 130 10 36 chrX 116054629 116054937 -60919203 - AluJo SINE Alu -12 300 1 953 178 39 0 chrX 116054937 116055117 -60919023 - MER58B DNA MER1_type -9 332 146 2108 134 7 0 chrX 116055124 116055431 -60918709 - AluJo SINE Alu -2 310 2 1101 105 7 0 chrX 116055497 116055649 -60918491 - AluSq SINE Alu -158 155 3 1980 137 10 3 chrX 116055957 116056250 -60917890 - AluJb SINE Alu -17 295 1 1829 123 0 8 chrX 116056406 116056658 -60917482 + AluSx SINE Alu 1 250 -62 2156 100 14 3 chrX 116056696 116056985 -60917155 - AluSc SINE Alu -17 292 1 339 210 208 71 chrX 116056997 116057042 -60917098 - L1MC4 LINE L1 -17 8025 7988 2328 92 31 0 chrX 116057042 116057336 -60916804 + AluSp SINE Alu 1 303 -10 339 210 208 71 chrX 116057336 116058092 -60916048 - L1MC4 LINE L1 -54 7988 6959 1379 72 0 0 chrX 116058483 116058650 -60915490 + AluY SINE Alu 130 296 -15 795 160 0 0 chrX 116058654 116058773 -60915367 - FLAM_C SINE Alu -20 123 5 2382 98 3 0 chrX 116058987 116059284 -60914856 - AluSp SINE Alu -15 298 1 2229 128 0 10 chrX 116059352 116059665 -60914475 - AluSx SINE Alu -2 310 1 703 225 123 0 chrX 116060208 116060395 -60913745 + MER63A DNA MER1_type 1 210 0 499 266 0 0 chrX 116060579 116060692 -60913448 + L2 LINE L2 3201 3313 0 594 180 10 0 chrX 116060722 116060822 -60913318 + MIR SINE MIR 5 105 -157 2169 72 3 7 chrX 116060860 116061151 -60912989 + L1PB1 LINE L1 5861 6150 -1 806 115 35 0 chrX 116061157 116061270 -60912870 - FLAM_C SINE Alu -16 117 1 416 205 0 0 chrX 116061272 116061350 -60912790 - MIR SINE MIR -116 146 69 * 484 250 0 9 chrX 116061345 116061457 -60912683 + MIR SINE MIR 115 225 -37 396 308 67 2 chrX 116061464 116061614 -60912526 - MIR3 SINE MIR -55 153 6 2204 101 0 0 chrX 116061631 116061918 -60912222 - AluSx SINE Alu -16 296 10 239 111 48 16 chrX 116063369 116063432 -60910708 + CT-rich Low_complexity Low_complexity 2 66 0 1460 60 0 0 chrX 116063845 116064012 -60910128 - AluY SINE Alu -16 295 129 231 61 0 0 chrX 116064167 116064200 -60909940 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 588 239 15 8 chrX 116064638 116064772 -60909368 + L2 LINE L2 3179 3313 0 431 262 175 18 chrX 116064770 116064982 -60909158 - MIR3 SINE MIR -13 249 2 * 2192 120 3 0 chrX 116065558 116065857 -60908283 - AluSx SINE Alu -12 300 1 906 192 19 0 chrX 116066158 116066314 -60907826 - MER5A DNA MER1_type -9 180 22 878 150 0 0 chrX 116067041 116067174 -60906966 - AluJb SINE Alu -179 133 1 2429 84 3 3 chrX 116067188 116067499 -60906641 - AluSp SINE Alu -2 311 1 1988 134 33 10 chrX 116067507 116067812 -60906328 - AluSx SINE Alu 0 312 1 1700 124 113 4 chrX 116067986 116068252 -60905888 + AluSx SINE Alu 1 295 -17 2179 110 13 0 chrX 116068519 116068820 -60905320 - AluSx SINE Alu -7 305 1 2277 113 0 0 chrX 116069123 116069414 -60904726 + AluSg SINE Alu 1 291 -19 1644 155 74 15 chrX 116069470 116069741 -60904399 - AluJb SINE Alu -25 287 1 335 271 117 79 chrX 116270609 116270900 -60703240 + L2 LINE L2 1791 2092 -1222 407 277 46 72 chrX 116271120 116271409 -60702731 - L1ME3A LINE L1 -26 6634 6329 798 235 0 18 chrX 116272458 116272628 -60701512 - MER5B DNA MER1_type -5 173 7 180 0 0 0 chrX 116272927 116272947 -60701193 + (A)n Simple_repeat Simple_repeat 1 20 0 1693 226 8 5 chrX 116273114 116273495 -60700645 + L1MC1 LINE L1 5952 6333 0 869 283 116 0 chrX 116273495 116273909 -60700231 + L1M4c LINE L1 1088 1549 -4835 610 212 96 7 chrX 116273911 116274057 -60700083 + MLT1A1 LTR MaLR 1 159 -206 3350 105 22 6 chrX 116274057 116274560 -60699580 + L1P3 LINE L1 626 1136 -5325 15416 31 2 1 chrX 116274660 116276522 -60697618 + L1P LINE L1 3431 5294 -852 4776 252 43 11 chrX 116276622 116277683 -60696457 - L1ME3A LINE L1 -510 6154 5005 2079 109 0 17 chrX 116277683 116277985 -60696155 + AluSg SINE Alu 1 297 -13 4776 252 43 11 chrX 116277985 116278766 -60695374 - L1ME3A LINE L1 -1659 5005 4251 320 250 31 0 chrX 116278751 116278847 -60695293 - L1ME3A LINE L1 -4754 1892 1794 * 290 281 49 45 chrX 116278912 116279136 -60695004 - L1ME3A LINE L1 -6303 239 15 1185 295 72 18 chrX 116279877 116280528 -60693612 - L1MCa LINE L1 -1140 5286 4601 1527 318 63 31 chrX 116280536 116281188 -60692952 + L1M3d LINE L1 417 1089 -5214 1004 287 31 41 chrX 116281194 116281359 -60692781 + L1M3d LINE L1 1440 1605 -4777 2446 78 0 0 chrX 116281359 116281668 -60692472 + AluY SINE Alu 1 309 -2 1004 287 31 41 chrX 116281668 116281986 -60692154 + L1M3d LINE L1 1605 1997 -4385 5483 263 45 15 chrX 116282131 116284115 -60690025 - L1MCa LINE L1 -1854 4572 2530 255 153 35 47 chrX 116284119 116284204 -60689936 - L1MCa LINE L1 -4431 1995 1912 6605 98 14 65 chrX 116284205 116285334 -60688806 + MER11C LTR ERVK 1 1071 0 1701 243 24 24 chrX 116285485 116286029 -60688111 + L1MC/D LINE L1 4376 4919 -1227 2922 183 26 24 chrX 116286072 116286113 -60688027 + L1MC/D LINE L1 5047 5086 -1247 1224 206 60 25 chrX 116286113 116286136 -60688004 - AluJo SINE Alu -6 296 275 423 0 0 0 chrX 116286136 116286183 -60687957 + (TC)n Simple_repeat Simple_repeat 2 48 0 1224 206 60 25 chrX 116286183 116286441 -60687699 - AluJo SINE Alu -27 275 5 2922 183 26 24 chrX 116286441 116286491 -60687649 + L1MC/D LINE L1 5086 5134 -1199 1902 163 3 0 chrX 116286491 116286779 -60687361 - AluSx SINE Alu -23 289 1 2922 183 26 24 chrX 116286779 116287446 -60686694 + L1MC/D LINE L1 5134 5802 -531 367 300 45 9 chrX 116287547 116287767 -60686373 + L1M3d LINE L1 3044 3271 -3111 1584 184 7 13 chrX 116287773 116288111 -60686029 + AluSx SINE Alu 1 312 0 228 115 16 33 chrX 116288310 116288371 -60685769 + (TC)n Simple_repeat Simple_repeat 1 60 0 2551 64 0 0 chrX 116288408 116288719 -60685421 - AluY SINE Alu 0 311 1 199 338 15 15 chrX 116289389 116289457 -60684683 - L2 LINE L2 -8 3264 3197 317 303 81 0 chrX 116289471 116289570 -60684570 - MIR SINE MIR -72 136 30 349 331 21 1 chrX 116289702 116289820 -60684320 - MIR SINE MIR -87 121 1 4187 194 37 9 chrX 116290950 116292007 -60682133 - L1MB5 LINE L1 0 6985 5900 261 0 0 0 chrX 116292026 116292055 -60682085 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 336 306 65 41 chrX 116292393 116292563 -60681577 - HAL1 LINE L1 -741 1766 1593 27 94 0 0 chrX 116293860 116293924 -60680216 + AT_rich Low_complexity Low_complexity 1 64 0 3901 213 7 13 chrX 116294126 116294986 -60679154 - L1MB5 LINE L1 -1945 5012 4158 20829 97 13 10 chrX 116295102 116297368 -60676772 - L1PA6 LINE L1 -292 5862 3603 2266 88 3 0 chrX 116297368 116297664 -60676476 - AluY SINE Alu -14 297 1 20829 97 13 10 chrX 116297664 116298874 -60675266 - L1PA6 LINE L1 -2551 3603 2379 200 31 62 0 chrX 116298874 116298906 -60675234 + T-rich Low_complexity Low_complexity 2 35 0 20829 97 13 10 chrX 116298906 116299071 -60675069 - L1PA6 LINE L1 -3775 2379 2216 1654 255 60 59 chrX 116299180 116299929 -60674211 - L1MB5 LINE L1 -5180 1679 930 456 332 23 28 chrX 116300460 116300677 -60673463 - L1MB5 LINE L1 -6633 226 11 443 18 18 0 chrX 116300739 116300795 -60673345 + (CA)n Simple_repeat Simple_repeat 2 58 0 271 223 45 89 chrX 116300797 116300954 -60673186 + MER103 DNA DNA 2 151 -15 180 179 0 0 chrX 116300980 116301019 -60673121 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 310 291 126 7 chrX 116301633 116301784 -60672356 + MIR SINE MIR 67 235 -27 412 314 131 18 chrX 116301972 116302201 -60671939 - MIR SINE MIR -6 256 2 25 31 0 0 chrX 116302265 116302297 -60671843 + AT_rich Low_complexity Low_complexity 1 32 0 1936 168 30 30 chrX 116303213 116303576 -60670564 + THE1B LTR MaLR 2 364 0 9604 137 35 3 chrX 116303576 116305107 -60669033 + THE1A-int LTR MaLR 1 1580 0 2318 131 3 19 chrX 116305109 116305468 -60668672 + THE1A LTR MaLR 3 355 0 1823 167 44 22 chrX 116305744 116306110 -60668030 - THE1C LTR MaLR 0 375 2 226 262 0 24 chrX 116306122 116306206 -60667934 + (TA)n Simple_repeat Simple_repeat 1 82 0 10514 130 39 9 chrX 116306972 116309917 -60664223 - L1PBa LINE L1 -3050 3812 634 1128 132 5 0 chrX 116309920 116310110 -60664030 - L1PBa LINE L1 -6668 195 5 702 200 86 0 chrX 116310239 116310414 -60663726 - L1MA8 LINE L1 -2 6289 6100 * 1539 202 21 15 chrX 116310410 116310877 -60663263 + L1M2 LINE L1 5048 5515 -743 5271 192 25 19 chrX 116310899 116312081 -60662059 - L1M1 LINE L1 -1823 5742 4554 3728 97 2 0 chrX 116312081 116312608 -60661532 - L1PA12 LINE L1 0 6168 5641 1333 156 189 11 chrX 116312649 116312924 -60661216 + LOR1b LTR ERV1 138 461 0 2545 113 30 0 chrX 116312924 116313450 -60660690 - L1PA12 LINE L1 -524 5644 5105 2771 274 82 21 chrX 116313708 116315288 -60658852 - L1M1 LINE L1 -3895 3670 2259 2038 123 44 27 chrX 116315290 116315657 -60658483 - THE1C LTR MaLR -2 373 1 4346 201 25 39 chrX 116315669 116316328 -60657812 - L1PB4 LINE L1 0 6156 5490 2367 72 3 10 chrX 116316328 116316632 -60657508 - AluSp SINE Alu -11 302 1 4346 201 25 39 chrX 116316632 116317791 -60656349 - L1PB4 LINE L1 -666 5490 4357 326 189 9 0 chrX 116317899 116318010 -60656130 + (CATTC)n Simple_repeat Simple_repeat 4 115 0 300 343 76 12 chrX 116319069 116319241 -60654899 + MER117 DNA MER1_type 13 195 -2 1541 201 3 24 chrX 116319984 116320322 -60653818 + L1M3 LINE L1 5391 5721 -447 197 134 45 15 chrX 116320352 116320419 -60653721 + (TA)n Simple_repeat Simple_repeat 2 70 0 207 0 0 0 chrX 116320458 116320481 -60653659 + (TA)n Simple_repeat Simple_repeat 2 24 0 436 285 27 32 chrX 116320574 116320795 -60653345 + L1MB1 LINE L1 4109 4328 -1818 1800 175 14 22 chrX 116320797 116321168 -60652972 - L1MB1 LINE L1 -1240 4906 4539 4188 212 14 28 chrX 116321171 116321760 -60652380 + L1MB1 LINE L1 4902 5498 -691 2027 140 3 0 chrX 116321760 116322068 -60652072 + AluSg SINE Alu 1 309 -1 4188 212 14 28 chrX 116322068 116322771 -60651369 + L1MB1 LINE L1 5498 6175 -14 * 4421 235 17 12 chrX 116322765 116323742 -60650398 + L1PA16 LINE L1 12 993 -6572 2863 122 65 21 chrX 116323842 116324365 -60649775 + MER4-int LTR ERV1 5852 6397 -201 2057 143 0 0 chrX 116324375 116324676 -60649464 + AluSx SINE Alu 12 312 0 1017 111 19 0 chrX 116324715 116324877 -60649263 + L1PB2 LINE L1 5952 6116 -35 504 208 38 9 chrX 116324877 116324983 -60649157 + L2 LINE L2 2762 2870 -444 4247 177 17 15 chrX 116324988 116325801 -60648339 + L1MC1 LINE L1 5490 6304 -29 1452 195 19 4 chrX 116325901 116326168 -60647972 - AluJb SINE Alu -40 272 2 696 287 28 19 chrX 116328085 116328402 -60645738 + L1PA16 LINE L1 2071 2390 -5176 * 9502 212 24 27 chrX 116328393 116328673 -60645467 + L1PA16 LINE L1 4072 4351 -3234 2005 175 11 16 chrX 116328673 116329050 -60645090 + THE1C LTR MaLR 1 375 0 9502 212 24 27 chrX 116329050 116332168 -60641972 + L1PA16 LINE L1 4351 7449 -136 4922 31 0 0 chrX 116332165 116332783 -60641357 + L1PA3 LINE L1 2888 3505 -2641 * 6825 30 0 0 chrX 116332883 116333689 -60640451 + L1PA3 LINE L1 5347 6152 -3 621 194 45 0 chrX 116333717 116333851 -60640289 + L1PA16 LINE L1 7442 7581 -4 357 238 99 20 chrX 116334469 116334568 -60639572 + MER63 DNA MER1_type 1 733 -103 3005 104 19 0 chrX 116334568 116334991 -60639149 - MLT2A1 LTR ERVL 0 444 14 287 235 25 17 chrX 116335091 116335210 -60638930 + L1MC/D LINE L1 2275 2394 -3990 1433 202 96 11 chrX 116335233 116335760 -60638380 + L1MC/D LINE L1 2988 3574 -2808 22 35 0 0 chrX 116335771 116335800 -60638340 + AT_rich Low_complexity Low_complexity 1 29 0 3578 238 22 1 chrX 116336140 116337046 -60637094 + L1MC/D LINE L1 3628 4552 -1830 439 168 89 10 chrX 116337040 116337141 -60636999 + L1MB1 LINE L1 5788 5896 -293 * 330 319 68 32 chrX 116337146 116337484 -60636656 - HAL1 LINE L1 -1144 1363 1014 697 262 89 23 chrX 116338824 116339038 -60635102 - MIR SINE MIR -14 248 21 447 366 65 42 chrX 116339072 116339501 -60634639 + L1MC/D LINE L1 5545 5983 -2061 408 337 71 11 chrX 116339521 116339705 -60634435 - L2 LINE L2 -13 3300 3106 345 287 234 36 chrX 116339792 116339959 -60634181 - L2 LINE L2 -376 2938 2739 2218 108 0 0 chrX 116339967 116340263 -60633877 - AluSc SINE Alu -13 296 1 208 379 10 10 chrX 116341506 116341609 -60632531 + MIR SINE MIR 49 151 -57 3907 13 0 9 chrX 116341640 116342097 -60632043 - L1PA2 LINE L1 -1 6154 5702 302 302 48 24 chrX 116342191 116342317 -60631823 - MIR SINE MIR -14 248 120 21 0 0 0 chrX 116342391 116342412 -60631728 + AT_rich Low_complexity Low_complexity 1 21 0 743 252 0 6 chrX 116342622 116342781 -60631359 - MLT1A1 LTR MaLR 0 365 208 22 0 0 0 chrX 116343658 116343680 -60630460 + AT_rich Low_complexity Low_complexity 1 22 0 2298 79 0 58 chrX 116343858 116344187 -60629953 + AluSg SINE Alu 1 310 0 464 343 28 12 chrX 116344210 116344461 -60629679 + L1M4 LINE L1 5 259 -6283 1902 225 16 6 chrX 116344666 116345164 -60628976 - L1 LINE L1 -1183 4963 4461 * 8822 134 43 2 chrX 116345163 116346666 -60627474 - L1PBa LINE L1 -4173 2690 1126 22 56 0 0 chrX 116346666 116346702 -60627438 + AT_rich Low_complexity Low_complexity 1 36 0 8294 27 0 0 chrX 116346702 116348445 -60625695 - L1PA3 LINE L1 -4 6151 4406 16346 23 1 1 chrX 116348445 116350407 -60623733 + L1PA3 LINE L1 2473 4436 -1710 1410 192 0 0 chrX 116350387 116350647 -60623493 - L1PBa LINE L1 -5724 1139 880 * 1645 208 45 49 chrX 116350647 116351188 -60622952 - MLT2A2 LTR ERVL -2 552 1 5199 141 19 14 chrX 116351190 116352069 -60622071 - L1PBa LINE L1 -5979 884 1 23 0 0 0 chrX 116352286 116352309 -60621831 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 116352330 116352358 -60621782 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 116352371 116352399 -60621741 + AT_rich Low_complexity Low_complexity 1 28 0 2707 182 14 2 chrX 116352501 116352995 -60621145 + L1MB3 LINE L1 5605 6104 -79 2553 180 29 22 chrX 116353023 116353605 -60620535 - L1MA7 LINE L1 -8 6283 5698 6984 182 31 7 chrX 116353605 116355365 -60618775 + L1MA7 LINE L1 3879 5684 -607 907 229 38 45 chrX 116355368 116355656 -60618484 + pTR5 LTR ERV1 743 1028 -1410 4824 105 97 1 chrX 116355851 116356604 -60617536 + LTR12 LTR ERV1 1 825 -1 490 148 11 0 chrX 116356636 116356724 -60617416 + L1MB3 LINE L1 6088 6176 -7 306 246 118 62 chrX 116356781 116356976 -60617164 - L1M4 LINE L1 -2978 3168 2963 281 302 10 10 chrX 116357017 116357113 -60617027 - MLT1J1 LTR MaLR -6 440 345 213 330 55 22 chrX 116357257 116357348 -60616792 - L2 LINE L2 -8 3264 3171 273 302 31 39 chrX 116357368 116357497 -60616643 + MIR SINE MIR 45 172 -90 21 57 0 0 chrX 116357525 116357560 -60616580 + AT_rich Low_complexity Low_complexity 1 35 0 545 289 29 6 chrX 116358413 116358586 -60615554 - MER45A DNA AcHobo 0 178 2 1747 153 31 6 chrX 116358640 116358966 -60615174 - L1MA4A LINE L1 -6 6297 5964 6702 151 15 33 chrX 116359066 116360382 -60613758 + L1P3 LINE L1 1005 2342 -4119 2389 188 39 4 chrX 116360484 116361000 -60613140 - L1MA4A LINE L1 -844 5302 4769 22 88 0 0 chrX 116361009 116361066 -60613074 + AT_rich Low_complexity Low_complexity 1 57 0 821 313 12 4 chrX 116361091 116361331 -60612809 + MLT1J LTR MaLR 61 302 -209 487 322 107 4 chrX 116361331 116361564 -60612576 - L1ME LINE L1 -376 5786 5530 731 383 75 23 chrX 116361583 116362321 -60611819 - L2 LINE L2 -36 3277 2491 818 231 31 0 chrX 116363182 116363342 -60610798 + MLT1A1 LTR MaLR 201 365 0 407 309 85 51 chrX 116363343 116363777 -60610363 + L1MEc LINE L1 1551 2147 -4416 256 268 47 24 chrX 116363771 116363898 -60610242 + L1MEc LINE L1 1731 1860 -4536 * 278 103 75 19 chrX 116364122 116364229 -60609911 + (TA)n Simple_repeat Simple_repeat 1 113 0 3193 259 39 21 chrX 116364327 116365744 -60608396 + L1MEc LINE L1 1894 3331 -2884 2427 216 76 18 chrX 116365778 116366344 -60607796 - MER21B LTR ERV1 -264 599 1 2173 161 101 38 chrX 116366425 116366921 -60607219 - MER21B-int LTR ERV1 -49 4142 3616 986 234 19 75 chrX 116366927 116367338 -60606802 - MER21-int LTR ERV1 -85 5038 4651 180 266 133 71 chrX 116367754 116367867 -60606273 + L3b LINE CR1 1442 1561 -22 1309 121 10 0 chrX 116368208 116368415 -60605725 - L1PB1 LINE L1 -167 5984 5776 303 203 0 0 chrX 116368415 116368479 -60605661 + (CATATA)n Simple_repeat Simple_repeat 4 67 0 340 303 0 0 chrX 116368480 116368569 -60605571 - L1MC4 LINE L1 -1340 6702 6614 322 276 23 0 chrX 116368497 116368584 -60605556 + L1MC4 LINE L1 6614 6702 -1340 * 3212 177 6 0 chrX 116368584 116369662 -60604478 - L1P5 LINE L1 -360 5791 4709 1812 216 0 0 chrX 116369660 116370059 -60604081 + L1MEc LINE L1 4044 4442 -1773 * 1231 217 40 60 chrX 116370834 116371254 -60602886 - LTR56 LTR ERV1 0 445 34 1491 262 11 0 chrX 116371292 116371639 -60602501 - MER21-int LTR ERV1 -977 3214 2864 711 131 0 0 chrX 116371639 116371738 -60602402 - AluSp/q SINE Alu -49 264 166 866 125 0 22 chrX 116371897 116372033 -60602107 - AluSq/x SINE Alu -179 133 1 2780 216 37 21 chrX 116372037 116372708 -60601432 - MER21-int LTR ERV1 -1324 2867 2186 393 138 46 0 chrX 116372704 116372769 -60601371 - MER21-int LTR ERV1 -2179 2012 1945 * 8330 236 36 24 chrX 116372802 116375351 -60598789 - L1 LINE L1 -1483 6082 3497 2981 193 22 6 chrX 116375351 116376036 -60598104 + L1 LINE L1 3984 4679 -1467 1836 235 132 22 chrX 116376051 116376635 -60597505 - L1 LINE L1 -6905 660 13 1643 247 57 18 chrX 116376639 116377150 -60596990 - MER21-int LTR ERV1 -2533 1658 1128 409 302 0 0 chrX 116377316 116377412 -60596728 + MIR SINE MIR 41 136 -72 273 266 0 16 chrX 116378185 116378249 -60595891 - L2 LINE L2 -5 3267 3205 724 344 62 39 chrX 116378748 116379388 -60594752 - L1ME3 LINE L1 -169 5993 5339 3900 164 28 8 chrX 116379423 116380167 -60593973 + L1PB4 LINE L1 5395 6153 -3 10122 213 81 7 chrX 116380174 116382478 -60591662 + L1MA1 LINE L1 17 2491 -5074 795 244 5 0 chrX 116382477 116382674 -60591466 + L1MA1 LINE L1 3795 3992 -3573 * 8739 187 16 29 chrX 116382788 116383155 -60590985 + L1MA1 LINE L1 4413 4783 -2938 7793 72 4 4 chrX 116383155 116384162 -60589978 + LTR13 LTR ERVK 1 1007 0 8739 187 16 29 chrX 116384162 116384614 -60589526 + L1MA1 LINE L1 4783 5239 -2482 5665 36 0 3 chrX 116384614 116385286 -60588854 + L1PA5 LINE L1 5474 6143 -11 207 0 0 0 chrX 116385287 116385310 -60588830 + (TA)n Simple_repeat Simple_repeat 2 24 0 8739 187 16 29 chrX 116385310 116386142 -60587998 + L1MA1 LINE L1 5239 6080 -1641 2223 102 24 0 chrX 116386142 116386435 -60587705 - AluSc SINE Alu -9 300 1 8739 187 16 29 chrX 116386435 116387905 -60586235 + L1MA1 LINE L1 6080 7497 -224 722 158 43 0 chrX 116387972 116388136 -60586004 + L1MA2 LINE L1 6037 6207 -97 531 269 50 65 chrX 116388722 116388847 -60585293 + Charlie7 DNA MER1_type 417 542 -2070 2161 112 26 0 chrX 116388847 116389151 -60584989 + AluSx SINE Alu 1 312 0 531 269 50 65 chrX 116389151 116389423 -60584717 + Charlie7 DNA MER1_type 542 808 -1804 17550 203 23 66 chrX 116389479 116397277 -60576863 + L1PA13 LINE L1 1 7448 -153 1814 180 16 39 chrX 116397277 116397661 -60576479 + THE1C LTR MaLR 1 375 0 17550 203 23 66 chrX 116397661 116397809 -60576331 + L1PA13 LINE L1 7448 7601 0 323 215 0 0 chrX 116398037 116398102 -60576038 + L1MA4 LINE L1 5930 5994 -306 36 19 0 19 chrX 116398135 116398168 -60575972 + AT_rich Low_complexity Low_complexity 1 34 -19 1803 140 35 0 chrX 116398168 116398510 -60575630 - L1MA2 LINE L1 0 6304 5951 36 19 0 19 chrX 116398510 116398530 -60575610 + AT_rich Low_complexity Low_complexity 34 53 0 1400 123 9 0 chrX 116398658 116398885 -60575255 - L1MA2 LINE L1 -345 5957 5729 3855 215 95 25 chrX 116398991 116400365 -60573775 - L1 LINE L1 -2006 4842 3374 2006 162 39 32 chrX 116400374 116400921 -60573219 - MLT2A2 LTR ERVL 0 554 1 562 277 48 0 chrX 116400922 116401110 -60573030 - L1 LINE L1 -3480 3368 3172 4129 276 64 68 chrX 116401111 116401557 -60572583 - L1 LINE L1 -4644 2205 1759 1077 82 0 0 chrX 116401557 116401703 -60572437 - L1MA2 LINE L1 0 6304 6159 4129 276 64 68 chrX 116401703 116403459 -60570681 - L1 LINE L1 -5090 1759 12 5665 224 95 32 chrX 116403483 116405246 -60568894 - L1M3e LINE L1 -5042 1988 115 1830 315 40 55 chrX 116406027 116407010 -60567130 + L2 LINE L2 1902 2869 -445 437 321 48 11 chrX 116408448 116408635 -60565505 - MIR SINE MIR -65 197 4 7499 106 56 2 chrX 116408799 116411174 -60562966 + L1PBa LINE L1 3 2648 -4215 569 115 0 0 chrX 116411176 116411254 -60562886 + AluS SINE Alu 3 80 -232 3053 221 7 0 chrX 116411355 116412071 -60562069 - L1 LINE L1 -2123 5442 4722 219 62 21 42 chrX 116412139 116412187 -60561953 + (TA)n Simple_repeat Simple_repeat 2 48 0 7800 133 36 44 chrX 116412187 116412505 -60561635 - L1 LINE L1 -4170 3395 3076 988 46 0 23 chrX 116412505 116412636 -60561504 - L1PA3 LINE L1 -1 6154 6027 7800 133 36 44 chrX 116412636 116412704 -60561436 - L1 LINE L1 -4489 3076 3009 352 43 0 0 chrX 116412704 116412750 -60561390 - MADE1 DNA Mariner 0 80 35 7800 133 36 44 chrX 116412750 116413858 -60560282 - L1 LINE L1 -4556 3009 1868 2110 176 36 32 chrX 116413859 116414408 -60559732 - MLT2A2 LTR ERVL 0 554 1 8681 231 11 20 chrX 116414408 116415893 -60558247 - L1M1 LINE L1 -5694 1871 404 1899 111 0 0 chrX 116415893 116416145 -60557995 - AluSg SINE Alu -56 254 3 8681 231 11 20 chrX 116416145 116416531 -60557609 - L1M1 LINE L1 -7161 404 16 272 191 48 24 chrX 116416537 116416621 -60557519 + L1MB4 LINE L1 6095 6180 0 1862 211 41 20 chrX 116417196 116417656 -60556484 + Tigger6b DNA MER2_type 14 483 -1114 1725 262 50 76 chrX 116417891 116418531 -60555609 - L2 LINE L2 -1 3312 2694 1509 127 12 0 chrX 116418531 116418783 -60555357 - L1MA3 LINE L1 0 6305 6051 1725 262 50 76 chrX 116418783 116419122 -60555018 - L2 LINE L2 -619 2694 2348 222 325 113 38 chrX 116419128 116419288 -60554852 + L2 LINE L2 2698 2869 -445 2023 186 9 0 chrX 116419439 116419772 -60554368 + MER1B DNA MER1_type 2 337 0 1529 165 50 53 chrX 116419913 116420289 -60553851 + THE1C LTR MaLR 1 375 0 3284 165 10 15 chrX 116420289 116420883 -60553257 + THE1C-int LTR MaLR 1 591 -1060 2009 233 99 34 chrX 116420896 116421342 -60552798 - MER50 LTR ERV1 0 734 228 2889 68 0 0 chrX 116421342 116421738 -60552402 - L1PA8 LINE L1 0 6172 5792 2009 233 99 34 chrX 116421738 116421969 -60552171 - MER50 LTR ERV1 -506 228 13 6077 164 5 17 chrX 116421975 116423008 -60551132 + THE1C-int LTR MaLR 561 1580 0 1560 183 57 41 chrX 116423010 116423377 -60550763 + THE1C LTR MaLR 3 375 0 199 281 49 49 chrX 116423387 116423469 -60550671 + L2 LINE L2 3231 3312 -1 1794 161 46 3 chrX 116423659 116423964 -60550176 + THE1B LTR MaLR 47 364 0 9902 130 37 8 chrX 116423964 116425499 -60548641 + THE1B-int LTR MaLR 1 1580 0 2150 143 43 6 chrX 116425499 116425850 -60548290 + THE1B LTR MaLR 1 364 0 1500 201 65 14 chrX 116426306 116426675 -60547465 + MLT1B LTR MaLR 3 390 0 21 0 0 0 chrX 116426718 116426739 -60547401 + AT_rich Low_complexity Low_complexity 1 21 0 261 314 183 7 chrX 116426889 116427026 -60547114 - MER5A DNA MER1_type -10 179 19 197 266 133 82 chrX 116426891 116427049 -60547091 + MER5B DNA MER1_type 12 177 -1 * 3407 70 9 5 chrX 116427220 116427662 -60546478 + MLT2A1 LTR ERVL 1 444 0 11054 58 2 0 chrX 116427662 116429018 -60545122 + HERVL-A1 LTR ERVL 1 1359 -4295 7472 88 7 16 chrX 116429011 116430031 -60544109 + HERVL LTR ERVL 4334 5344 -310 * 2751 223 9 5 chrX 116430136 116430705 -60543435 - MER21-int LTR ERV1 -3619 572 2 5576 245 44 26 chrX 116430754 116432815 -60541325 + L1MB7 LINE L1 3419 5520 -654 1346 220 10 39 chrX 116432814 116433227 -60540913 + L1MB7 LINE L1 5784 6184 0 * 1121 15 0 0 chrX 116433231 116433361 -60540779 - L1PA2 LINE L1 -268 5887 5758 589 14 0 0 chrX 116433361 116433460 -60540680 + L1PA3 LINE L1 6074 6174 0 291 368 19 9 chrX 116434111 116434217 -60539923 + MER5A DNA MER1_type 77 183 -6 26 0 0 0 chrX 116434865 116434891 -60539249 + AT_rich Low_complexity Low_complexity 1 26 0 477 0 0 0 chrX 116435803 116435856 -60538284 + (TG)n Simple_repeat Simple_repeat 2 54 0 1113 292 79 57 chrX 116437684 116438331 -60535809 - MLT2F LTR ERVL 0 663 3 2706 16 0 26 chrX 116438924 116439234 -60534906 - AluYb8 SINE Alu -3 315 14 306 0 0 0 chrX 116439726 116439760 -60534380 + (CA)n Simple_repeat Simple_repeat 1 34 0 272 127 18 0 chrX 116439760 116439815 -60534325 + GA-rich Low_complexity Low_complexity 1 56 0 239 329 103 27 chrX 116440255 116440401 -60533739 + MLT2F LTR ERVL 65 221 -442 4031 220 25 21 chrX 116440476 116441675 -60532465 + L1M4c LINE L1 777 2074 -4310 17977 194 31 18 chrX 116441678 116446380 -60527760 + L1MA1 LINE L1 27 4790 -2775 9324 166 7 19 chrX 116446398 116449393 -60524747 + L1MA1 LINE L1 4762 7717 -4 3374 247 53 13 chrX 116449434 116450597 -60523543 + L1M4c LINE L1 2085 3337 -3045 1935 119 39 3 chrX 116450597 116450882 -60523258 + AluSg SINE Alu 1 295 -15 3374 247 53 13 chrX 116450882 116451363 -60522777 + L1M4c LINE L1 3337 3798 -2584 35 0 0 0 chrX 116451377 116451412 -60522728 + AT_rich Low_complexity Low_complexity 1 35 0 1462 218 3 9 chrX 116451412 116451747 -60522393 - L1 LINE L1 -2111 4035 3703 933 200 15 0 chrX 116451747 116451946 -60522194 + L1MA10 LINE L1 6130 6332 -2 796 249 35 4 chrX 116452068 116452297 -60521843 + L1M4c LINE L1 3814 4049 -2333 212 0 0 35 chrX 116452362 116452391 -60521749 + (TTA)n Simple_repeat Simple_repeat 1 28 0 14077 31 2 0 chrX 116452392 116454827 -60519313 - L1PA3 LINE L1 -18 6137 3698 4057 61 4 6 chrX 116454827 116455370 -60518770 + L1P LINE L1 3198 3739 -2407 1969 178 33 34 chrX 116456864 116457368 -60516772 + MLT2A2 LTR ERVL 1 514 -40 2108 126 3 0 chrX 116458759 116459052 -60515088 + AluSx SINE Alu 1 294 -18 312 285 112 46 chrX 116459733 116460121 -60514019 - L1MC/D LINE L1 -407 5714 5391 196 293 146 12 chrX 116461558 116461640 -60512500 + MIR SINE MIR 9 101 -161 826 265 30 22 chrX 116461642 116461770 -60512370 + MIR SINE MIR 10 142 -120 3949 151 80 31 chrX 116461770 116462631 -60511509 - MER4D LTR ERV1 0 903 1 826 265 30 22 chrX 116462631 116462732 -60511408 + MIR SINE MIR 142 241 -21 1032 252 179 16 chrX 116463412 116463547 -60510593 + LTR16A LTR ERVL 3 115 -335 3351 168 15 62 chrX 116463547 116464269 -60509871 + LTR8 LTR ERV1 4 691 0 1032 252 179 16 chrX 116464269 116464518 -60509622 + LTR16A LTR ERVL 115 450 0 205 435 32 12 chrX 116464714 116464962 -60509178 - L2 LINE L2 -216 3056 2804 777 205 19 6 chrX 116465429 116465590 -60508550 + MER20 DNA MER1_type 53 215 -4 1071 188 34 46 chrX 116465753 116466077 -60508063 + MER33 DNA MER1_type 5 324 0 397 296 74 27 chrX 116466580 116466772 -60507368 + MIR SINE MIR 7 205 -57 268 205 6 0 chrX 116467265 116467335 -60506805 + LTR28 LTR ERV1 1 55 -379 2180 170 32 3 chrX 116467344 116467721 -60506419 + MER61D LTR ERV1 114 501 0 605 266 32 50 chrX 116467831 116468049 -60506091 + MIR SINE MIR 48 261 -1 4036 134 37 15 chrX 116468737 116469473 -60504667 + L1PA16 LINE L1 5415 6166 0 2132 119 3 0 chrX 116469553 116469846 -60504294 + AluSx SINE Alu 13 306 -6 2095 179 94 24 chrX 116470326 116470793 -60503347 - MER61D LTR ERV1 -1 500 1 1642 136 0 71 chrX 116470793 116471116 -60503024 - MER61D-int LTR ERV1 0 5217 4918 2207 132 25 33 chrX 116471122 116471517 -60502623 - MER61D-int LTR ERV1 -1227 3990 3599 12259 204 56 14 chrX 116471524 116475596 -60498544 + L1PB1 LINE L1 6 3906 -2961 2393 50 0 0 chrX 116475596 116475919 -60498221 - AluY SINE Alu 0 323 1 12259 204 56 14 chrX 116475919 116477906 -60496234 + L1PB1 LINE L1 3906 6526 -341 534 70 0 0 chrX 116477906 116477977 -60496163 + (TA)n Simple_repeat Simple_repeat 1 71 0 12259 204 56 14 chrX 116477977 116478326 -60495814 + L1PB1 LINE L1 6526 6859 -8 23 0 0 0 chrX 116478326 116478349 -60495791 + AT_rich Low_complexity Low_complexity 1 23 0 9066 152 50 38 chrX 116478349 116481837 -60492303 - MER41-int LTR ERV1 -650 5296 609 3473 58 0 7 chrX 116481839 116482290 -60491850 - LTR7 LTR ERV1 -2 448 1 2389 79 45 13 chrX 116482290 116482668 -60491472 - HERVH LTR ERV1 0 7713 7324 1299 134 19 0 chrX 116482668 116482884 -60491256 - HERVH LTR ERV1 -1894 5819 5600 4171 138 1 1 chrX 116482885 116483547 -60490593 - HERVH LTR ERV1 -2564 5149 4488 3157 119 0 6 chrX 116483549 116484054 -60490086 - HERVH LTR ERV1 -3720 3993 3492 873 140 7 0 chrX 116484044 116484194 -60489946 - HERVH LTR ERV1 -4423 3290 3140 * 19434 92 13 13 chrX 116484173 116487168 -60486972 - HERVH LTR ERV1 -4718 2995 1 3465 60 0 7 chrX 116487170 116487621 -60486519 - LTR7 LTR ERV1 -2 448 1 4213 168 58 72 chrX 116487621 116488824 -60485316 - LTR7-int LTR ERV1 -300 4917 266 316 198 57 38 chrX 116489031 116489137 -60485003 - MER61D-int LTR ERV1 -6480 516 409 * 440 282 20 27 chrX 116489134 116489283 -60484857 - MER61D-int LTR ERV1 -5068 149 2 2205 173 108 2 chrX 116489283 116489711 -60484429 - MER61D LTR ERV1 0 501 29 869 280 128 24 chrX 116490556 116491049 -60483091 - MLT1H LTR MaLR 0 549 6 257 344 73 7 chrX 116491062 116491213 -60482927 - MIR SINE MIR -74 188 28 192 352 23 47 chrX 116492296 116492424 -60481716 + MIR SINE MIR 60 184 -78 2244 116 0 3 chrX 116492679 116492980 -60481160 - AluY SINE Alu -11 300 1 304 267 67 29 chrX 116493064 116493169 -60480971 + MIR SINE MIR 33 141 -67 249 108 0 0 chrX 116493854 116493891 -60480249 + (ATG)n Simple_repeat Simple_repeat 3 39 0 916 188 76 8 chrX 116494619 116494917 -60479223 + MLT1A1 LTR MaLR 1 353 -12 1905 174 45 31 chrX 116496520 116496869 -60477271 + MSTB LTR MaLR 1 358 -68 2430 68 3 3 chrX 116496869 116497180 -60476960 - AluY SINE Alu 0 311 1 1905 174 45 31 chrX 116497180 116497250 -60476890 + MSTB LTR MaLR 358 426 0 225 132 0 0 chrX 116497299 116497337 -60476803 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 722 311 87 25 chrX 116497691 116498208 -60475932 + L2 LINE L2 2586 3155 -158 432 280 57 81 chrX 116498218 116498524 -60475616 + L1MEd LINE L1 927 1303 -1187 2252 238 8 28 chrX 116498769 116499545 -60474595 - L1MCa LINE L1 -3012 3414 2655 * 3802 174 84 148 chrX 116499543 116501162 -60472978 - L1MCa LINE L1 -4777 1649 134 490 260 119 32 chrX 116501448 116501707 -60472433 + L1ME3 LINE L1 5399 5681 -481 257 106 0 0 chrX 116501710 116501757 -60472383 + L1MA3 LINE L1 6259 6305 0 736 125 0 0 chrX 116501759 116501871 -60472269 - L1P LINE L1 -1547 4599 4488 1442 56 22 0 chrX 116501873 116502052 -60472088 + L1PA7 LINE L1 5969 6151 -3 334 213 117 0 chrX 116502052 116502175 -60471965 + L1ME3 LINE L1 5682 5817 -345 437 301 0 0 chrX 116502181 116502314 -60471826 + L1ME3 LINE L1 5987 6119 -43 26 0 0 0 chrX 116502340 116502366 -60471774 + AT_rich Low_complexity Low_complexity 1 26 0 400 327 9 9 chrX 116502821 116502931 -60471209 - L2 LINE L2 0 3272 3163 1695 265 45 21 chrX 116503154 116503804 -60470336 - MER20B DNA MER1_type 0 783 119 1052 185 106 40 chrX 116505750 116505843 -60468297 + MER63 DNA MER1_type 683 768 -293 2344 141 35 35 chrX 116505843 116506275 -60467865 - MSTB1 LTR MaLR 0 432 1 1052 185 106 40 chrX 116506275 116506483 -60467657 + MER63 DNA MER1_type 768 1004 -57 4758 175 28 24 chrX 116507074 116507645 -60466495 - L1MA8 LINE L1 0 6312 5745 189 0 0 0 chrX 116507645 116507666 -60466474 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2035 110 0 3 chrX 116507666 116507948 -60466192 - AluSg SINE Alu -29 281 1 4758 175 28 24 chrX 116507948 116508901 -60465239 - L1MA8 LINE L1 -566 5746 4806 192 40 0 0 chrX 116508904 116508929 -60465211 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 893 235 0 39 chrX 116508929 116509163 -60464977 - AluJo SINE Alu -1 311 87 2394 154 46 11 chrX 116509163 116509624 -60464516 - L1MA8 LINE L1 -1329 4817 4341 8131 89 9 0 chrX 116509624 116510713 -60463427 + HERVL-A2 LTR ERVL 4556 5654 0 3158 113 7 0 chrX 116510713 116511155 -60462985 + MLT2A2 LTR ERVL 1 445 -8 6314 231 36 17 chrX 116511155 116512831 -60461309 - L1MA8 LINE L1 -1804 4342 2635 2195 132 18 0 chrX 116512831 116513165 -60460975 - MER61A LTR ERV1 -3 340 1 2324 111 35 0 chrX 116513165 116513508 -60460632 - MER61A-int LTR ERV1 0 5217 4863 * 15639 119 10 17 chrX 116513502 116516155 -60457985 - MER61A-int LTR ERV1 -393 6087 2610 9946 128 28 6 chrX 116516173 116517809 -60456331 + L1P LINE L1 2278 3950 -2196 5091 99 26 14 chrX 116517810 116518607 -60455533 - MER61A-int LTR ERV1 -2994 2223 1417 229 125 0 0 chrX 116518607 116518639 -60455501 - MER61A LTR ERV1 -234 109 78 315 71 0 0 chrX 116518639 116518681 -60455459 - MER61A-int LTR ERV1 -3856 1361 1320 * 2512 139 20 75 chrX 116518674 116519331 -60454809 - MER61A-int LTR ERV1 -4440 777 2 1895 151 42 9 chrX 116519332 116519664 -60454476 - MER61A LTR ERV1 0 343 1 455 254 0 51 chrX 116519664 116519802 -60454338 - L1MA8 LINE L1 -3505 2641 2511 409 323 46 8 chrX 116521454 116521584 -60452556 - L2 LINE L2 -1 3271 3137 241 214 18 0 chrX 116521610 116521666 -60452474 - MER103 DNA DNA -55 111 55 225 345 91 38 chrX 116522563 116522772 -60451368 + L2 LINE L2 2862 3081 -191 1838 148 65 34 chrX 116523625 116523976 -60450164 + THE1B LTR MaLR 1 362 -2 5897 123 55 49 chrX 116523978 116525304 -60448836 + THE1B-int LTR MaLR 1 1580 0 1888 152 39 33 chrX 116525304 116525666 -60448474 + THE1B LTR MaLR 1 364 0 2328 116 19 26 chrX 116525974 116526352 -60447788 - THE1C LTR MaLR 0 375 1 993 242 0 23 chrX 116526354 116526573 -60447567 + MER58A DNA MER1_type 2 215 -9 1940 131 27 0 chrX 116527605 116527902 -60446238 + AluSq SINE Alu 1 305 -8 5743 16 0 0 chrX 116527905 116528751 -60445389 + L1PA3 LINE L1 5070 5915 -240 22 0 0 0 chrX 116528800 116528822 -60445318 + AT_rich Low_complexity Low_complexity 1 22 0 358 238 62 0 chrX 116529235 116529315 -60444825 + L2 LINE L2 3229 3313 0 306 0 0 0 chrX 116532607 116532641 -60441499 + (TA)n Simple_repeat Simple_repeat 1 34 0 4539 251 83 30 chrX 116533455 116534427 -60439713 + L1M4 LINE L1 2310 3228 -2918 6787 65 18 1 chrX 116534427 116535833 -60438307 + L1PA8 LINE L1 4742 6164 -8 4539 251 83 30 chrX 116535833 116536336 -60437804 + L1M4 LINE L1 3228 3703 -2443 1244 278 16 14 chrX 116536336 116536700 -60437440 - MLT1A1 LTR MaLR 0 365 1 4539 251 83 30 chrX 116536700 116537108 -60437032 + L1M4 LINE L1 3703 4295 -1851 4722 32 7 2 chrX 116538620 116539184 -60434956 + L1PA3 LINE L1 5585 6151 -4 287 297 34 29 chrX 116539192 116539367 -60434773 - L1MC/D LINE L1 -2378 5430 5255 24 0 0 0 chrX 116539568 116539592 -60434548 + AT_rich Low_complexity Low_complexity 1 24 0 4076 165 7 7 chrX 116539924 116541314 -60432826 - L1PB2 LINE L1 -296 5855 4462 236 330 57 22 chrX 116541350 116541580 -60432560 - L1MC/D LINE L1 -1877 4269 4032 397 315 28 12 chrX 116541604 116541855 -60432285 - L1MC/D LINE L1 -2196 3950 3696 23 0 0 0 chrX 116542353 116542376 -60431764 + AT_rich Low_complexity Low_complexity 1 23 0 3219 189 18 6 chrX 116542391 116543063 -60431077 - L1MA8 LINE L1 -3 6288 5609 1448 254 11 5 chrX 116543083 116543461 -60430679 - L1MA6 LINE L1 -8 6292 5913 2964 126 38 11 chrX 116543461 116543930 -60430210 + MER41-int LTR ERV1 5078 5559 -387 903 154 0 21 chrX 116543930 116544073 -60430067 + THE1C LTR MaLR 1 140 -235 678 188 0 36 chrX 116544075 116544213 -60429927 - THE1C LTR MaLR -242 133 1 2691 179 17 22 chrX 116544213 116544832 -60429308 - L1MA8 LINE L1 -665 5626 5010 2630 153 9 2 chrX 116544832 116545257 -60428883 + MSTA LTR MaLR 1 428 0 2691 179 17 22 chrX 116545257 116545478 -60428662 - L1MA8 LINE L1 -1281 5010 4789 974 267 39 51 chrX 116545469 116546061 -60428079 - L1M2c LINE L1 -4456 3110 2267 * 15328 33 3 0 chrX 116546053 116547893 -60426247 - L1PA3 LINE L1 -1139 5007 3162 7418 33 2 0 chrX 116547893 116549042 -60425098 + L1PA3 LINE L1 5002 6152 -3 945 346 36 14 chrX 116549061 116549561 -60424579 - L1M2a LINE L1 -5051 2117 1607 434 271 25 25 chrX 116550008 116550126 -60424014 - L2 LINE L2 -5 3308 3191 245 200 38 48 chrX 116550346 116550451 -60423689 + Charlie5 DNA MER1_type 1962 2065 -547 8539 219 31 18 chrX 116550617 116552902 -60421238 - L1MC3 LINE L1 -217 7568 5106 5295 238 51 26 chrX 116552898 116553506 -60420634 - L1MB5 LINE L1 0 6174 5583 * 1826 112 9 75 chrX 116553506 116553827 -60420313 - AluSx SINE Alu -12 300 1 5295 238 51 26 chrX 116553827 116554625 -60419515 - L1MB5 LINE L1 -591 5583 4806 2314 146 3 11 chrX 116554625 116555001 -60419139 - THE1C LTR MaLR 0 375 3 9402 125 30 45 chrX 116555003 116556607 -60417533 - THE1C-int LTR MaLR 0 1580 2 2265 141 27 11 chrX 116556609 116556977 -60417163 - THE1C LTR MaLR -1 374 1 5295 238 51 26 chrX 116556977 116558325 -60415815 - L1MB5 LINE L1 -1368 4806 3343 2616 58 0 0 chrX 116559196 116559507 -60414633 - AluY SINE Alu 0 311 1 1201 232 38 59 chrX 116559868 116560294 -60413846 - L1ME1 LINE L1 -10 6156 5740 1385 219 84 19 chrX 116560311 116560681 -60413459 - THE1C LTR MaLR -2 394 1 1067 168 67 5 chrX 116560687 116560896 -60413244 - MLT-int LTR MaLR -6 1729 1508 1260 136 0 11 chrX 116560897 116561121 -60413019 + AluSg/x SINE Alu 100 321 0 4964 279 36 42 chrX 116561125 116562644 -60411496 - MSTD-int LTR MaLR -221 1514 4 1107 231 134 11 chrX 116562646 116562997 -60411143 - MSTD LTR MaLR -2 394 1 1543 235 35 14 chrX 116563005 116563434 -60410706 - L1ME1 LINE L1 -444 5722 5285 * 43737 42 1 7 chrX 116563432 116569621 -60404519 - L1PA4 LINE L1 0 6155 1 32 0 0 0 chrX 116571049 116571081 -60403059 + AT_rich Low_complexity Low_complexity 1 32 0 1893 165 32 50 chrX 116571785 116572221 -60401919 + L1MA7 LINE L1 5857 6284 -7 429 44 44 22 chrX 116573005 116573096 -60401044 + (TA)n Simple_repeat Simple_repeat 1 93 0 2400 122 25 3 chrX 116573096 116573456 -60400684 - THE1C LTR MaLR -7 368 1 9845 113 34 47 chrX 116573456 116573840 -60400300 - THE1C-int LTR MaLR 0 1580 1192 4525 134 72 0 chrX 116573840 116574578 -60399562 + LTR25 LTR ERV1 1 791 -3 9845 113 34 47 chrX 116574578 116575795 -60398345 - THE1C-int LTR MaLR -388 1192 1 2563 124 8 0 chrX 116575795 116576167 -60397973 - THE1C LTR MaLR 0 375 1 211 146 24 0 chrX 116576895 116576936 -60397204 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2577 270 84 66 chrX 116576952 116579597 -60394543 + L1M3c LINE L1 2 2279 -3933 2230 227 53 6 chrX 116579607 116580269 -60393871 + L1M3c LINE L1 3095 3787 -2423 2414 159 5 32 chrX 116580269 116580709 -60393431 - MSTA LTR MaLR 0 428 1 2318 174 62 29 chrX 116580709 116581196 -60392944 - MSTA-int LTR MaLR 0 1651 1149 385 174 0 0 chrX 116581190 116581259 -60392881 + MST-int LTR MaLR 1345 1413 -238 * 1251 171 13 4 chrX 116581254 116581488 -60392652 - MSTA-int LTR MaLR -1061 590 355 3600 216 33 15 chrX 116581498 116582532 -60391608 + L1M2 LINE L1 2055 3104 -3744 903 286 97 69 chrX 116582521 116583118 -60391022 - L1M4 LINE L1 -5579 963 350 * 256 222 28 28 chrX 116583235 116583307 -60390833 - L1M4 LINE L1 -6408 134 63 1491 200 7 0 chrX 116583389 116583699 -60390441 - L1MB7 LINE L1 0 6184 5873 312 243 81 40 chrX 116583720 116583868 -60390272 - L1MEd LINE L1 -5041 1078 925 1010 247 37 17 chrX 116583983 116584279 -60389861 - MER58B DNA MER1_type 0 341 40 1647 130 53 41 chrX 116584410 116584749 -60389391 - L1MA5 LINE L1 -5 7357 7015 26 30 0 0 chrX 116584749 116584782 -60389358 + AT_rich Low_complexity Low_complexity 1 33 0 2017 157 3 3 chrX 116584782 116585120 -60389020 - L1PB3 LINE L1 0 6154 5817 3318 167 41 16 chrX 116585127 116585934 -60388206 - L1MA5 LINE L1 -332 7030 6206 811 205 31 83 chrX 116585969 116586198 -60387942 - L1MA5 LINE L1 -6992 217 1 1887 198 65 50 chrX 116587667 116587788 -60386352 + MLT1D LTR MaLR 3 121 -384 2155 123 3 0 chrX 116587788 116588089 -60386051 - AluSx SINE Alu -10 302 1 1887 198 65 50 chrX 116588089 116588463 -60385677 + MLT1D LTR MaLR 121 505 0 348 312 88 24 chrX 116588663 116588868 -60385272 - Charlie8 DNA MER1_type -2143 274 57 581 165 0 63 chrX 116589192 116589319 -60384821 - L1MA9 LINE L1 -339 5829 5711 2490 162 10 23 chrX 116589319 116589792 -60384348 + L1MA9 LINE L1 5837 6312 0 447 329 61 13 chrX 116590816 116591044 -60383096 - MIR SINE MIR -4 258 20 262 259 12 47 chrX 116592075 116592160 -60381980 + HAL1 LINE L1 3 84 -2423 255 323 16 16 chrX 116592292 116592416 -60381724 + HAL1 LINE L1 272 395 -2112 459 244 162 35 chrX 116593332 116593647 -60380493 + HAL1 LINE L1 980 1334 -1173 520 368 47 23 chrX 116593864 116594553 -60379587 + ERVL LTR ERVL 3895 4583 -1071 9400 143 42 16 chrX 116594958 116597327 -60376813 + L1PBa LINE L1 1 2670 -4192 288 0 0 0 chrX 116597327 116597359 -60376781 + (TTG)n Simple_repeat Simple_repeat 2 33 0 9400 143 42 16 chrX 116597359 116598391 -60375749 + L1PBa LINE L1 2670 3673 -3189 26345 35 2 3 chrX 116598613 116601863 -60372277 - L1P LINE L1 -769 5377 2131 8281 148 47 58 chrX 116601964 116604197 -60369943 - MER61D-int LTR ERV1 -300 4917 2662 3359 64 0 7 chrX 116604197 116604648 -60369492 - LTR7 LTR ERV1 -2 448 1 8281 148 47 58 chrX 116604648 116605904 -60368236 - MER61D-int LTR ERV1 -2555 2662 224 344 204 56 37 chrX 116606056 116606164 -60367976 - MER61D-int LTR ERV1 -6478 518 409 * 485 282 20 27 chrX 116606161 116606310 -60367830 - MER61D-int LTR ERV1 -5068 149 2 2362 173 108 2 chrX 116606310 116606738 -60367402 - MER61D LTR ERV1 0 501 29 18094 94 6 19 chrX 116607253 116609959 -60364181 + L1PA5 LINE L1 617 3288 -2858 27926 49 2 4 chrX 116610059 116613642 -60360498 - L1P LINE L1 -930 5216 1640 6769 76 1 0 chrX 116613742 116615360 -60358780 + L1PA5 LINE L1 4531 6150 -4 3272 144 28 7 chrX 116615366 116615936 -60358204 + L1PA13 LINE L1 1524 2105 -4682 4088 123 2 0 chrX 116616060 116616693 -60357447 + L1PA5 LINE L1 860 1493 -4653 23211 58 2 2 chrX 116616693 116620480 -60353660 + L1PA5 LINE L1 2364 6151 -3 6335 44 0 0 chrX 116620494 116621263 -60352877 + L1PA5 LINE L1 5386 6154 0 6791 90 16 8 chrX 116621439 116623237 -60350903 + L1PA7 LINE L1 4367 6139 -15 288 0 0 0 chrX 116623242 116623274 -60350866 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 866 43 0 17 chrX 116623720 116623836 -60350304 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 336 337 0 0 chrX 116624316 116624399 -60349741 + Tigger7 DNA MER2_type 2405 2487 0 1046 362 43 0 chrX 116624407 116624777 -60349363 - L1M4b LINE L1 -6007 852 467 296 376 0 24 chrX 116624818 116624943 -60349197 - L1M4b LINE L1 -6478 381 260 472 162 15 96 chrX 116625068 116625204 -60348936 - L1M4b LINE L1 -6685 174 50 197 318 54 39 chrX 116625693 116625798 -60348342 - L2 LINE L2 -514 2800 2691 557 54 0 0 chrX 116625798 116625872 -60348268 + L1PA5 LINE L1 6081 6154 0 197 318 54 39 chrX 116625872 116625895 -60348245 - L2 LINE L2 -623 2691 2670 548 264 6 30 chrX 116625932 116626099 -60348041 + MER58A DNA MER1_type 49 211 -13 312 289 0 0 chrX 116626238 116626342 -60347798 + T-rich Low_complexity Low_complexity 1 104 0 453 121 0 0 chrX 116626394 116626477 -60347663 - L1PB1 LINE L1 -1 6150 6068 399 21 0 0 chrX 116626827 116626875 -60347265 + (CA)n Simple_repeat Simple_repeat 1 48 0 44 35 0 0 chrX 116627778 116627836 -60346304 + AT_rich Low_complexity Low_complexity 1 58 0 271 274 22 22 chrX 116627878 116628057 -60346083 + (TA)n Simple_repeat Simple_repeat 2 180 0 6049 140 18 8 chrX 116628123 116629182 -60344958 - L1MA5A LINE L1 0 6297 5219 185 268 0 0 chrX 116629587 116629628 -60344512 - L2 LINE L2 -10 3303 3263 293 262 135 0 chrX 116629799 116629940 -60344200 - HAL1 LINE L1 -76 2431 2272 351 335 66 33 chrX 116630020 116630262 -60343878 - LTR16C LTR ERVL -83 408 159 354 324 46 50 chrX 116630599 116630858 -60343282 - ERVL LTR ERVL -414 5350 5093 22 35 0 0 chrX 116631263 116631292 -60342848 + AT_rich Low_complexity Low_complexity 1 29 0 1001 158 5 81 chrX 116631888 116632110 -60342030 + MER3 DNA MER1_type 1 205 -4 2379 114 14 3 chrX 116632472 116632832 -60341308 - L1PB1 LINE L1 -5 6146 5783 9318 203 14 11 chrX 116632840 116634922 -60339218 - L1 LINE L1 -1087 6478 4391 4551 152 61 5 chrX 116634920 116636211 -60337929 + L1PBa LINE L1 2143 3505 -3352 * 1866 157 57 29 chrX 116636211 116636561 -60337579 - THE1B LTR MaLR -4 360 1 7504 109 1 10 chrX 116636561 116637603 -60336537 - THE1B-int LTR MaLR 0 1580 548 1724 116 0 0 chrX 116637600 116637858 -60336282 - THE1B-int LTR MaLR -1320 260 3 * 2060 146 48 25 chrX 116637860 116638216 -60335924 - THE1B LTR MaLR 0 364 1 1395 234 5 3 chrX 116638216 116638605 -60335535 + L1 LINE L1 2782 3171 -2975 * 19730 173 20 3 chrX 116638604 116642057 -60332083 - L1 LINE L1 -4043 3522 13 242 267 23 35 chrX 116642548 116642634 -60331506 + L2 LINE L2 2998 3082 -190 190 373 0 13 chrX 116642700 116642775 -60331365 + L2 LINE L2 3238 3311 -2 2028 123 0 17 chrX 116643020 116643312 -60330828 + AluSq SINE Alu 1 287 -26 219 222 30 144 chrX 116643350 116643517 -60330623 - MIR SINE MIR -44 218 71 736 186 179 117 chrX 116645504 116645620 -60328520 - L1ME2 LINE L1 0 6164 6057 227 179 0 0 chrX 116645620 116645659 -60328481 - MER3 DNA MER1_type -160 49 11 736 186 179 117 chrX 116645659 116645910 -60328230 - L1ME2 LINE L1 -107 6057 5730 191 86 0 29 chrX 116645910 116645945 -60328195 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 3094 157 62 15 chrX 116645945 116646784 -60327356 - L1PA3 LINE L1 -19 6144 5241 625 283 9 19 chrX 116648543 116648755 -60325385 - L2 LINE L2 0 3313 3104 249 339 58 35 chrX 116649842 116649986 -60324154 - MIR3 SINE MIR -68 140 14 7122 32 0 0 chrX 116650399 116651239 -60322901 - L1PA3 LINE L1 0 6155 5316 228 67 0 0 chrX 116651609 116651639 -60322501 + (A)n Simple_repeat Simple_repeat 1 30 0 319 353 0 0 chrX 116652117 116652219 -60321921 - L2 LINE L2 -43 3270 3169 386 325 0 0 chrX 116652219 116652342 -60321798 + (TA)n Simple_repeat Simple_repeat 2 124 0 586 295 60 25 chrX 116652383 116652583 -60321557 - MIR SINE MIR 0 262 56 287 336 18 35 chrX 116652898 116653011 -60321129 + MIR SINE MIR 22 132 -76 181 370 79 24 chrX 116653998 116654125 -60320015 - MIR3 SINE MIR -71 137 4 25 31 0 0 chrX 116654447 116654479 -60319661 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chrX 116654614 116654658 -60319482 + AT_rich Low_complexity Low_complexity 1 44 0 2275 93 3 0 chrX 116654868 116655157 -60318983 - AluSg SINE Alu -15 295 6 37 39 0 0 chrX 116655649 116655700 -60318440 + AT_rich Low_complexity Low_complexity 1 51 0 684 146 18 1 chrX 116655817 116655941 -60318199 + L1P4 LINE L1 5669 5799 -322 12122 194 13 14 chrX 116656746 116658959 -60315181 + L1 LINE L1 15 2223 -5342 301 307 72 48 chrX 116659460 116659626 -60314514 + MIR3 SINE MIR 38 207 -1 3111 131 17 9 chrX 116660725 116661260 -60312880 + L1MA1 LINE L1 5764 6302 0 1698 301 51 16 chrX 116661332 116662544 -60311596 + L1MEc LINE L1 1325 2539 -3676 8880 119 14 2 chrX 116662973 116664262 -60309878 + HERVL LTR ERVL 970 2274 -3380 243 224 0 0 chrX 116664281 116664348 -60309792 + L1 LINE L1 5821 5887 -1678 5081 103 7 38 chrX 116664350 116665119 -60309021 + HERVL LTR ERVL 2298 3042 -2612 696 65 21 0 chrX 116665117 116665210 -60308930 + HERVL LTR ERVL 3244 3338 -2316 * 7442 169 20 3 chrX 116665314 116666745 -60307395 + L1M1 LINE L1 3137 4592 -2973 372 171 0 0 chrX 116666745 116666856 -60307284 + A-rich Low_complexity Low_complexity 1 111 0 6323 165 56 21 chrX 116667016 116668222 -60305918 - THE1C-int LTR MaLR -329 1251 3 1733 180 58 19 chrX 116668224 116668585 -60305555 - THE1C LTR MaLR 0 375 1 1614 167 21 55 chrX 116668585 116668789 -60305351 - L1P4 LINE L1 -561 5600 5391 2162 116 0 13 chrX 116668789 116669100 -60305040 - AluSc SINE Alu -2 307 1 1614 167 21 55 chrX 116669100 116669113 -60305027 - L1P4 LINE L1 -770 5391 5379 3512 92 14 0 chrX 116669113 116669615 -60304525 - L1PA13 LINE L1 -6 6157 5649 1614 167 21 55 chrX 116669615 116670005 -60304135 - L1P4 LINE L1 -782 5379 5014 1897 157 11 6 chrX 116670110 116670467 -60303673 + L1MA2 LINE L1 5945 6303 -1 24 53 0 0 chrX 116671001 116671039 -60303101 + AT_rich Low_complexity Low_complexity 1 38 0 240 139 0 0 chrX 116671452 116671495 -60302645 - L1PA14 LINE L1 -4 6157 6115 385 252 23 8 chrX 116671596 116671727 -60302413 + L1M4 LINE L1 2193 2325 -3821 5038 234 38 19 chrX 116671812 116673335 -60300805 + L1M4 LINE L1 2317 3868 -2278 10155 120 3 15 chrX 116673645 116673955 -60300185 + L1P LINE L1 2998 3310 -2836 2133 101 10 7 chrX 116673955 116674252 -60299888 + AluY SINE Alu 1 298 -13 10155 120 3 15 chrX 116674252 116675559 -60298581 + L1P LINE L1 3310 4596 -1550 238 327 0 0 chrX 116676048 116676152 -60297988 + L1M4 LINE L1 4844 4947 -1199 768 179 69 41 chrX 116676251 116676497 -60297643 + L1M4 LINE L1 4980 5232 -914 378 349 7 20 chrX 116677577 116677726 -60296414 + MIR3 SINE MIR 52 198 -10 22 35 0 0 chrX 116678222 116678251 -60295889 + AT_rich Low_complexity Low_complexity 1 29 0 2215 101 19 7 chrX 116680280 116680588 -60293552 - AluSp SINE Alu -1 312 1 522 155 7 168 chrX 116680588 116680743 -60293397 - MER54A LTR ERVL -503 398 269 1135 188 29 47 chrX 116680776 116681052 -60293088 - MER54A LTR ERVL -628 273 3 1488 157 112 8 chrX 116681071 116681339 -60292801 + AluSg SINE Alu 1 296 -14 28 0 0 0 chrX 116681352 116681380 -60292760 + AT_rich Low_complexity Low_complexity 1 28 0 340 49 0 0 chrX 116681445 116681486 -60292654 - LTR23 LTR ERV1 -76 361 321 248 284 15 0 chrX 116682059 116682126 -60292014 - MLT1K LTR MaLR -342 246 179 615 281 69 50 chrX 116682207 116682784 -60291356 - L1ME4a LINE L1 -10 6111 5524 1038 261 111 17 chrX 116683220 116683763 -60290377 + L1MEc LINE L1 685 1278 -5118 1942 176 17 0 chrX 116683783 116684130 -60290010 + L1M1 LINE L1 5418 5770 -532 669 211 167 0 chrX 116684243 116684423 -60289717 - L1ME3A LINE L1 -345 5825 5616 2126 175 8 54 chrX 116684493 116684947 -60289193 - Tigger2a DNA MER2_type 0 434 4 360 0 0 0 chrX 116684949 116684989 -60289151 + (TG)n Simple_repeat Simple_repeat 2 41 0 3246 97 25 0 chrX 116685027 116685469 -60288671 - MLT2A2 LTR ERVL 0 453 1 992 138 0 13 chrX 116685545 116685704 -60288436 + Tigger1 DNA MER2_type 1 157 -2261 * 1040 128 8 116 chrX 116685693 116685935 -60288205 + Tigger1 DNA MER2_type 2202 2417 -1 596 302 189 16 chrX 116685935 116686571 -60287569 - L1M4 LINE L1 -1808 4338 3593 32 26 0 0 chrX 116686736 116686775 -60287365 + AT_rich Low_complexity Low_complexity 1 39 0 206 143 29 0 chrX 116687387 116687422 -60286718 + CT-rich Low_complexity Low_complexity 4 39 0 5969 133 4 31 chrX 116687522 116688942 -60285198 - L1PB1 LINE L1 -3 6148 4767 4559 204 22 21 chrX 116688940 116690119 -60284021 - L1 LINE L1 -815 5331 4152 * 1637 189 44 19 chrX 116690423 116690789 -60283351 - L1P LINE L1 -894 5252 4878 5023 198 24 6 chrX 116691567 116692648 -60281492 + L1MA3 LINE L1 3138 4238 -1908 4214 156 8 17 chrX 116692641 116693698 -60280442 + L1MA3 LINE L1 4918 5965 -340 * 4714 113 15 2 chrX 116693798 116694680 -60279460 - L1PA14 LINE L1 -208 5953 5059 1120 129 11 0 chrX 116695004 116695182 -60278958 + L1PB4 LINE L1 5444 5623 -533 2686 182 13 22 chrX 116695251 116695785 -60278355 + L1PB4 LINE L1 5624 6152 -4 249 213 213 0 chrX 116695809 116695903 -60278237 + L1MB4 LINE L1 816 929 -5717 3498 208 79 29 chrX 116696011 116697157 -60276983 + L1MB4 LINE L1 816 2006 -4640 4323 189 27 6 chrX 116697166 116698046 -60276094 + L1MB4 LINE L1 5779 6677 -1 505 72 24 0 chrX 116698051 116698134 -60276006 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 13958 211 30 10 chrX 116698752 116700009 -60274131 - L1PA14 LINE L1 -1174 4972 3741 1948 114 4 7 chrX 116700009 116700289 -60273851 - AluSx SINE Alu 0 312 34 13958 211 30 10 chrX 116700289 116702246 -60271894 - L1PA14 LINE L1 -2405 3741 1694 7807 153 37 15 chrX 116702354 116703728 -60270412 + L1MA3 LINE L1 2106 3533 -4032 396 0 0 0 chrX 116703728 116703772 -60270368 + (CA)n Simple_repeat Simple_repeat 1 44 0 7807 153 37 15 chrX 116703772 116704186 -60269954 + L1MA3 LINE L1 3533 3936 -3629 2414 96 6 28 chrX 116704189 116704552 -60269588 - THE1A LTR MaLR 0 355 1 2096 89 4 0 chrX 116704552 116704833 -60269307 - THE1A-int LTR MaLR 0 1580 1299 * 4794 207 89 8 chrX 116704831 116706006 -60268134 + L1MA3 LINE L1 5108 6378 -1187 397 0 0 0 chrX 116706000 116706044 -60268096 - L1P LINE L1 -1912 4234 4191 * 3227 24 5 0 chrX 116706044 116706422 -60267718 + L1PA3 LINE L1 5754 6133 -22 5933 145 20 22 chrX 116706540 116707839 -60266301 + L1MA3 LINE L1 6427 7724 0 25 31 0 0 chrX 116707839 116707871 -60266269 + AT_rich Low_complexity Low_complexity 1 32 0 237 329 48 57 chrX 116708912 116709122 -60265018 + L2 LINE L2 2300 2507 -807 371 354 0 22 chrX 116709202 116709383 -60264757 + L2 LINE L2 2690 2866 -448 397 289 109 0 chrX 116709769 116709897 -60264243 + MIR SINE MIR 99 240 -22 187 318 85 39 chrX 116710038 116710167 -60263973 - L2 LINE L2 -6 3307 3173 300 326 0 11 chrX 116711181 116711270 -60262870 - MIR SINE MIR -135 127 40 5728 74 8 0 chrX 116711464 116712209 -60261931 - L1PA7 LINE L1 -8 6146 5396 1703 153 25 76 chrX 116712597 116712949 -60261191 + THE1C LTR MaLR 1 333 -42 2212 80 6 42 chrX 116712949 116713260 -60260880 - AluSc SINE Alu -9 300 1 1703 153 25 76 chrX 116713260 116713300 -60260840 + THE1C LTR MaLR 333 373 -2 9500 139 12 32 chrX 116713302 116714915 -60259225 + THE1C-int LTR MaLR 1 1580 0 1811 150 31 60 chrX 116714915 116715301 -60258839 + THE1C LTR MaLR 1 375 0 2685 184 67 0 chrX 116715338 116715872 -60258268 - L1PA15 LINE L1 0 6165 5596 1396 201 61 28 chrX 116715872 116716235 -60257905 - THE1C LTR MaLR 0 375 1 2896 165 23 11 chrX 116716235 116716755 -60257385 - THE1C-int LTR MaLR 0 1580 1055 256 55 0 55 chrX 116716858 116716913 -60257227 + L1PB1 LINE L1 6099 6150 -1 * 4555 167 9 13 chrX 116716903 116717771 -60256369 + L1PB2 LINE L1 5285 6149 -2 22 0 0 0 chrX 116717771 116717793 -60256347 + AT_rich Low_complexity Low_complexity 1 22 0 325 308 13 88 chrX 116717891 116718050 -60256090 - MIR SINE MIR -112 150 4 495 255 240 5 chrX 116718107 116718315 -60255825 - MIR SINE MIR -3 259 3 825 293 9 0 chrX 116719208 116719430 -60254710 + MER58A DNA MER1_type 1 224 0 7111 53 6 0 chrX 116719598 116720906 -60253234 + L1PA7 LINE L1 4839 6151 -3 278 347 127 39 chrX 116721206 116721514 -60252626 - L2 LINE L2 -1 3312 2978 399 293 78 0 chrX 116722347 116722463 -60251677 + MIR SINE MIR 31 155 -107 321 313 119 30 chrX 116722800 116723211 -60250929 + L1MC4 LINE L1 6502 6875 -933 26 0 0 0 chrX 116723257 116723283 -60250857 + AT_rich Low_complexity Low_complexity 1 26 0 3853 182 6 23 chrX 116723750 116724671 -60249469 + L1P5 LINE L1 4528 5440 -716 974 207 0 0 chrX 116725432 116725596 -60248544 + FAM SINE Alu 1 164 -11 331 274 91 29 chrX 116728845 116729020 -60245120 - MIR SINE MIR -6 256 71 273 351 133 22 chrX 116729788 116730367 -60243773 - L2 LINE L2 -557 2757 2115 186 103 0 0 chrX 116730874 116730903 -60243237 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chrX 116730914 116730935 -60243205 + (A)n Simple_repeat Simple_repeat 1 21 0 18264 107 7 3 chrX 116730935 116733946 -60240194 - L1PA8A LINE L1 -21 6110 3083 2348 93 0 16 chrX 116733946 116734256 -60239884 - AluY SINE Alu -5 306 2 18264 107 7 3 chrX 116734256 116734787 -60239353 - L1PA8A LINE L1 -3048 3083 2556 26 0 0 0 chrX 116735670 116735696 -60238444 + AT_rich Low_complexity Low_complexity 1 26 0 691 195 0 92 chrX 116736875 116737006 -60237134 + MER20 DNA MER1_type 62 175 -44 2196 119 0 10 chrX 116737006 116737309 -60236831 + AluSx SINE Alu 1 300 -12 691 195 0 92 chrX 116737309 116737351 -60236789 + MER20 DNA MER1_type 175 219 0 390 332 199 5 chrX 116737447 116737658 -60236482 + MIR SINE MIR 1 252 -10 574 253 37 0 chrX 116741007 116741197 -60232943 + L1M4 LINE L1 2544 2740 -3406 204 200 0 0 chrX 116741197 116741247 -60232893 + T-rich Low_complexity Low_complexity 1 50 0 3824 225 43 8 chrX 116741247 116743157 -60230983 - L1MB1 LINE L1 -5 5987 4014 2094 183 38 21 chrX 116743165 116743586 -60230554 + MSTA LTR MaLR 1 428 0 8135 198 13 27 chrX 116743586 116745241 -60228899 + MSTA-int LTR MaLR 1 1632 -19 1972 204 60 0 chrX 116745266 116745668 -60228472 + MSTA LTR MaLR 3 428 0 3641 239 65 33 chrX 116745668 116747005 -60227135 - L1MB1 LINE L1 -1960 4010 2631 991 285 101 45 chrX 116747585 116748872 -60225268 - L1MB1 LINE L1 -3785 2185 723 976 239 22 4 chrX 116748874 116749104 -60225036 - L1MB1 LINE L1 -4970 921 688 1602 307 20 31 chrX 116749109 116749855 -60224285 - L1MB1 LINE L1 -5379 512 2 274 220 50 10 chrX 116749872 116749972 -60224168 + L1M4 LINE L1 2872 2975 -3171 1102 209 44 57 chrX 116750029 116750325 -60223815 - AluJo SINE Alu -10 302 11 2069 260 74 71 chrX 116750351 116752066 -60222074 + L1M4 LINE L1 3074 4794 -1352 971 272 10 60 chrX 116752204 116752505 -60221635 + L1M3a LINE L1 4 289 -5666 1592 186 45 3 chrX 116752512 116752867 -60221273 + L1 LINE L1 4306 4675 -1471 1221 232 25 28 chrX 116752879 116753206 -60220934 + L1 LINE L1 4872 5197 -949 3487 97 67 11 chrX 116753223 116753778 -60220362 - MER11A LTR ERVK 0 1266 681 1644 146 85 91 chrX 116754136 116754624 -60219516 + MER4-int LTR ERV1 2 554 -6044 299 107 0 174 chrX 116754684 116754805 -60219335 + MER4-int LTR ERV1 739 838 -5760 1313 263 64 11 chrX 116754852 116755213 -60218927 + MER4-int LTR ERV1 1845 2224 -4107 * 3872 157 10 5 chrX 116755212 116755830 -60218310 + MER4-int LTR ERV1 189 809 -5949 1492 134 46 0 chrX 116755865 116756125 -60218015 + MER4-int LTR ERV1 924 1173 -5425 5047 110 209 135 chrX 116756129 116757916 -60216224 + MER4-int LTR ERV1 1764 3681 -2917 * 13186 106 73 25 chrX 116757915 116758469 -60215671 + MER4-int LTR ERV1 3837 4363 -2235 4536 131 6 13 chrX 116758469 116759165 -60214975 - LTR8 LTR ERV1 0 691 1 13186 106 73 25 chrX 116759165 116760909 -60213231 + MER4-int LTR ERV1 4363 6247 -351 331 304 20 0 chrX 116761086 116761188 -60212952 + MER81 DNA DNA 11 114 0 358 329 86 7 chrX 116761243 116761395 -60212745 - LTR33 LTR ERVL -356 165 2 261 275 80 58 chrX 116761461 116761854 -60212286 - L1MC5 LINE L1 -385 7576 7261 300 260 67 39 chrX 116761891 116762171 -60211969 - L1MC4 LINE L1 -737 7224 6957 225 307 59 0 chrX 116764125 116764226 -60209914 + L1ME LINE L1 320 426 -5644 501 251 70 84 chrX 116764354 116764668 -60209472 + L1ME LINE L1 466 760 -5310 2351 103 0 0 chrX 116764668 116764978 -60209162 + AluSx SINE Alu 1 310 -2 501 251 70 84 chrX 116764978 116765091 -60209049 + L1ME LINE L1 760 873 -5197 332 339 83 5 chrX 116765283 116765475 -60208665 - L2 LINE L2 -947 2367 2161 7454 235 75 48 chrX 116765482 116767592 -60206548 + L1M3e LINE L1 1 2172 -4865 19582 164 18 21 chrX 116767709 116772454 -60201686 - L1P3 LINE L1 -1669 4792 3 607 268 0 20 chrX 116772459 116772657 -60201483 - L1 LINE L1 -3726 2420 2227 5589 218 42 30 chrX 116772790 116774201 -60199939 - L1PBa LINE L1 -3905 2958 1566 2277 143 64 7 chrX 116774201 116774606 -60199534 + MSTA LTR MaLR 1 428 0 5589 218 42 30 chrX 116774606 116774729 -60199411 - L1PBa LINE L1 -5297 1566 1446 317 62 21 0 chrX 116774729 116774777 -60199363 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 5589 218 42 30 chrX 116774777 116777103 -60197037 - L1PBa LINE L1 -5417 1446 3 4424 237 80 31 chrX 116777862 116780361 -60193779 + L1MB4 LINE L1 409 3047 -3597 361 302 8 8 chrX 116780411 116780540 -60193600 + L1MB4 LINE L1 4728 4856 -1788 730 271 26 0 chrX 116780596 116780825 -60193315 + L1MB4 LINE L1 5131 5365 -1279 705 228 4 4 chrX 116780825 116781002 -60193138 + MER4E LTR ERV1 1 284 -615 * 1630 220 14 8 chrX 116780999 116781354 -60192786 + MER4D LTR ERV1 547 903 0 1992 211 44 66 chrX 116781354 116782331 -60191809 + L1MB4 LINE L1 5362 6332 -346 2349 175 2 12 chrX 116782339 116782739 -60191401 - MER61B LTR ERV1 -29 396 1 27303 112 23 14 chrX 116782739 116786962 -60187178 - MER61B-int LTR ERV1 0 5217 958 3193 189 70 60 chrX 116786962 116787794 -60186346 - MER61B-int LTR ERV1 -4377 840 1 460 199 13 5 chrX 116787798 116787898 -60186242 - MER61C LTR ERV1 -21 397 224 1761 132 4 0 chrX 116787998 116788249 -60185891 - MER61B LTR ERV1 -173 252 1 1162 206 40 37 chrX 116788254 116788579 -60185561 + L1MB4 LINE L1 6335 6660 -18 1869 277 30 40 chrX 116788705 116789446 -60184694 + L1ME LINE L1 3 735 -5310 387 250 9 0 chrX 116789435 116789543 -60184597 + L1ME LINE L1 2885 2993 -3571 * 2317 262 39 7 chrX 116789533 116790349 -60183791 + L1ME LINE L1 4961 5802 -762 871 192 70 0 chrX 116790336 116790550 -60183590 + L1MC3 LINE L1 7557 7785 0 * 2106 224 102 26 chrX 116790692 116791375 -60182765 - MER63C DNA MER1_type -144 786 52 434 92 35 11 chrX 116791426 116791513 -60182627 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 508 175 10 48 chrX 116792216 116792319 -60181821 + MER5A DNA MER1_type 11 109 -80 865 110 0 0 chrX 116792322 116792449 -60181691 - L1PA13 LINE L1 -3 6160 6034 920 121 6 42 chrX 116792449 116792614 -60181526 + L1PA13 LINE L1 5860 6018 -145 573 241 206 23 chrX 116793111 116793379 -60180761 - L1ME3A LINE L1 -189 5932 5636 299 350 8 0 chrX 116793377 116793500 -60180640 + L1ME LINE L1 5913 6036 -544 * 2113 107 0 25 chrX 116793501 116793818 -60180322 + AluY SINE Alu 1 309 -2 337 270 74 53 chrX 116793957 116794173 -60179967 + LTR16B LTR ERVL 225 462 -2 970 208 71 111 chrX 116794414 116794794 -60179346 - MLT1A1 LTR MaLR 0 365 1 64 0 0 0 chrX 116794811 116794875 -60179265 + AT_rich Low_complexity Low_complexity 1 64 0 218 213 0 0 chrX 116794895 116794942 -60179198 + (TA)n Simple_repeat Simple_repeat 1 47 0 578 264 87 35 chrX 116794954 116795242 -60178898 - L1ME3A LINE L1 -24 6146 5844 313 286 60 0 chrX 116795459 116795543 -60178597 - L1MB7 LINE L1 -154 6030 5942 299 192 68 0 chrX 116795576 116795649 -60178491 + MER53 DNA DNA 111 188 -1 1439 257 59 25 chrX 116795655 116796263 -60177877 - L1MB7 LINE L1 -1028 5118 4490 1584 242 105 8 chrX 116796310 116796921 -60177219 + L1 LINE L1 3302 3971 -2175 380 163 12 58 chrX 116796919 116797005 -60177135 + L1MB4 LINE L1 6059 6140 -40 * 859 235 94 57 chrX 116797065 116797524 -60176616 + L1MC5 LINE L1 6928 7403 -558 22 0 0 0 chrX 116797592 116797614 -60176526 + AT_rich Low_complexity Low_complexity 1 22 0 242 271 52 21 chrX 116797905 116798001 -60176139 + MIR SINE MIR 130 228 -34 5937 139 70 34 chrX 116798307 116798783 -60175357 - Tigger3b DNA MER2_type -1797 1231 774 1675 191 3 0 chrX 116798783 116799071 -60175069 - AluJb SINE Alu -23 289 1 5937 139 70 34 chrX 116799071 116799481 -60174659 - Tigger3b DNA MER2_type -2254 774 289 1824 148 7 34 chrX 116799481 116799779 -60174361 + AluSx SINE Alu 1 290 -22 5937 139 70 34 chrX 116799779 116800079 -60174061 - Tigger3b DNA MER2_type -2739 289 1 2506 108 16 0 chrX 116800256 116800625 -60173515 - L1PB1 LINE L1 0 6151 5777 504 225 101 0 chrX 116802381 116802519 -60171621 + MIR SINE MIR 92 243 -19 714 211 0 0 chrX 116803397 116803525 -60170615 + FLAM_A SINE Alu 1 128 -5 228 271 28 21 chrX 116803565 116803657 -60170483 + MIR SINE MIR 25 116 -103 258 305 53 32 chrX 116803665 116803760 -60170380 - L2 LINE L2 -8 3264 3168 261 0 0 0 chrX 116804258 116804287 -60169853 + (A)n Simple_repeat Simple_repeat 1 29 0 467 148 10 59 chrX 116804913 116805014 -60169126 + MIR SINE MIR 123 218 -44 185 176 22 22 chrX 116806285 116806376 -60167764 + (TA)n Simple_repeat Simple_repeat 1 91 0 361 226 78 70 chrX 116806509 116806624 -60167516 - L2 LINE L2 -6 3266 3151 286 326 30 15 chrX 116806789 116806921 -60167219 + L3 LINE CR1 1348 1481 -96 28 0 0 0 chrX 116806963 116806991 -60167149 + AT_rich Low_complexity Low_complexity 1 28 0 7963 170 25 16 chrX 116807281 116808981 -60165159 + L1P3 LINE L1 1 1721 -4734 766 222 34 11 chrX 116809647 116809823 -60164317 - MER58A DNA MER1_type 0 224 45 226 205 0 108 chrX 116810323 116810406 -60163734 + MIR SINE MIR 133 206 -56 235 179 38 142 chrX 116812259 116812365 -60161775 - L2 LINE L2 0 3272 3178 268 344 33 25 chrX 116813684 116813806 -60160334 + L2 LINE L2 2935 3057 -215 705 284 24 4 chrX 116813961 116814211 -60159929 - L1ME LINE L1 -3257 2823 2569 708 286 69 86 chrX 116814299 116814506 -60159634 + LTR16C LTR ERVL 92 290 -201 270 0 0 0 chrX 116814506 116814536 -60159604 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 708 286 69 86 chrX 116814536 116814733 -60159407 + LTR16C LTR ERVL 290 489 -2 1109 269 92 31 chrX 116814769 116815966 -60158174 - L1ME LINE L1 -3558 2522 1273 208 237 0 0 chrX 116815969 116816007 -60158133 + (TG)n Simple_repeat Simple_repeat 1 38 0 328 289 10 0 chrX 116816047 116816144 -60157996 - L1ME LINE L1 -4930 1048 951 310 288 59 46 chrX 116816153 116816603 -60157537 - L1ME LINE L1 -5213 1048 536 410 248 108 9 chrX 116817472 116817694 -60156446 - L1MEd LINE L1 -4893 1417 1174 405 298 67 53 chrX 116818087 116818379 -60155761 - L1MEd LINE L1 -5044 1085 786 249 83 0 0 chrX 116818737 116818773 -60155367 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chrX 116819027 116819053 -60155087 + AT_rich Low_complexity Low_complexity 1 26 0 249 290 151 0 chrX 116819608 116819701 -60154439 - L2 LINE L2 -1 3312 3206 22 35 0 0 chrX 116819706 116819735 -60154405 + AT_rich Low_complexity Low_complexity 1 29 0 188 284 221 32 chrX 116820324 116820381 -60153759 + MIR SINE MIR 36 81 -127 352 306 0 15 chrX 116820381 116820515 -60153625 + MER94 DNA DNA 3 134 0 188 284 221 32 chrX 116820515 116820552 -60153588 + MIR SINE MIR 81 148 -60 312 313 59 114 chrX 116821579 116821851 -60152289 - L3 LINE CR1 -1 1576 1320 641 209 22 0 chrX 116821935 116822069 -60152071 + Tigger4(Zombi) DNA MER2_type 2595 2731 0 1970 189 68 2 chrX 116822213 116822610 -60151530 - MSTB LTR MaLR 0 426 4 247 327 56 37 chrX 116822850 116822957 -60151183 + MLT1H LTR MaLR 195 303 -246 524 243 34 89 chrX 116822983 116823161 -60150979 + MLT1H LTR MaLR 382 542 0 227 367 0 0 chrX 116823414 116823512 -60150628 + MLT1-int LTR MaLR 442 539 -832 447 282 71 23 chrX 116824550 116824904 -60149236 + MLT1H LTR MaLR 103 531 -18 21 57 0 0 chrX 116825088 116825123 -60149017 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chrX 116825217 116825262 -60148878 + AT_rich Low_complexity Low_complexity 1 45 0 229 305 133 16 chrX 116825394 116825522 -60148618 + MIR SINE MIR 107 249 -13 12558 121 8 37 chrX 116825585 116828419 -60145721 + L1P3 LINE L1 8 2820 -3641 741 252 43 35 chrX 116828573 116828827 -60145313 + LTR52-int LTR ERVL 59 314 -3242 233 29 0 29 chrX 116828827 116828862 -60145278 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 267 259 82 44 chrX 116829525 116829683 -60144457 + LTR52-int LTR ERVL 506 669 -2887 664 194 46 93 chrX 116829684 116829900 -60144240 + LTR52-int LTR ERVL 781 986 -2570 266 105 0 0 chrX 116830073 116830111 -60144029 + MLT2A2 LTR ERVL 416 453 0 868 112 8 0 chrX 116830111 116830245 -60143895 + HERVL-A2 LTR ERVL 1 135 -5519 29 70 0 0 chrX 116830249 116830306 -60143834 + AT_rich Low_complexity Low_complexity 1 57 0 5584 135 10 0 chrX 116830329 116831160 -60142980 + HERVL-A2 LTR ERVL 129 967 -4687 2183 124 45 25 chrX 116831538 116831893 -60142247 - THE1B LTR MaLR -2 362 1 842 287 68 49 chrX 116832043 116832496 -60141644 + L2 LINE L2 1710 2171 -1143 981 157 14 28 chrX 116832512 116832729 -60141411 - L1MA8 LINE L1 -3 6288 6075 646 95 0 11 chrX 116832732 116832827 -60141313 + L1M2 LINE L1 5686 5779 -512 4480 209 19 15 chrX 116832930 116833748 -60140392 - L1 LINE L1 -2061 4085 3260 1590 186 10 7 chrX 116833748 116834054 -60140086 - AluJb SINE Alu -5 307 1 4480 209 19 15 chrX 116834054 116834372 -60139768 - L1 LINE L1 -2886 3260 2945 3860 191 22 27 chrX 116834603 116836049 -60138091 - L1MA8 LINE L1 -203 6088 4647 1413 155 72 4 chrX 116836378 116836655 -60137485 - MLT2A2 LTR ERVL -157 296 1 7948 112 12 1 chrX 116836655 116837789 -60136351 - HERVL-A2 LTR ERVL 0 5654 4508 424 185 131 31 chrX 117037896 117038026 -59936114 + MER103 DNA DNA 18 160 -6 610 271 8 0 chrX 117038506 117038639 -59935501 - L2 LINE L2 0 3272 3139 1283 180 85 19 chrX 117039377 117039694 -59934446 + MER44D DNA MER2_type 1 608 -1 577 293 90 11 chrX 117040167 117040355 -59933785 - MIR SINE MIR 0 262 60 1036 293 163 5 chrX 117040367 117040814 -59933326 + LTR33A LTR ERVL 4 521 -2 301 250 0 0 chrX 117040818 117040874 -59933266 - MIR SINE MIR -204 58 3 599 191 19 0 chrX 117041015 117041120 -59933020 + L2 LINE L2 3199 3305 -8 818 271 92 0 chrX 117041250 117041457 -59932683 + MIR SINE MIR 23 248 -14 233 224 0 35 chrX 117041467 117041525 -59932615 + (TTA)n Simple_repeat Simple_repeat 1 56 0 478 234 90 0 chrX 117042423 117042534 -59931606 - L2 LINE L2 0 3313 3193 2064 122 7 10 chrX 117043493 117043796 -59930344 + AluSq SINE Alu 2 303 -10 898 289 69 35 chrX 117044610 117044903 -59929237 - L1ME3A LINE L1 -208 5962 5648 2405 143 48 14 chrX 117044903 117045317 -59928823 - MSTA LTR MaLR 0 428 1 898 289 69 35 chrX 117045317 117045456 -59928684 - L1ME3A LINE L1 -522 5648 5515 208 339 0 15 chrX 117045849 117045914 -59928226 - L2 LINE L2 0 3272 3209 484 308 117 9 chrX 117046194 117046408 -59927732 - MIR SINE MIR -6 256 20 616 311 25 69 chrX 117046933 117047210 -59926930 + L2 LINE L2 3008 3272 0 1040 260 25 0 chrX 117047335 117047570 -59926570 - MIR SINE MIR -9 253 13 628 304 57 17 chrX 117047835 117048065 -59926075 + MIR SINE MIR 22 260 -2 378 357 70 36 chrX 117048175 117048620 -59925520 + L2 LINE L2 1802 2261 -1053 21 0 0 0 chrX 117049315 117049336 -59924804 + AT_rich Low_complexity Low_complexity 1 21 0 183 129 0 0 chrX 117049468 117049499 -59924641 + (TG)n Simple_repeat Simple_repeat 1 31 0 402 275 184 23 chrX 117050575 117050793 -59923347 + MIR SINE MIR 9 261 -1 381 277 34 8 chrX 117051107 117051226 -59922914 - L2 LINE L2 -219 3053 2932 221 183 17 0 chrX 117051921 117051981 -59922159 + (CAT)n Simple_repeat Simple_repeat 2 62 0 381 260 271 6 chrX 117053051 117053232 -59920908 + MIR SINE MIR 28 256 -6 309 300 60 20 chrX 117053864 117053964 -59920176 + L2 LINE L2 3169 3272 0 259 391 0 0 chrX 117054464 117054556 -59919584 + MIR SINE MIR 158 249 -13 368 239 165 0 chrX 117056109 117056218 -59917922 - MIR SINE MIR -59 203 77 22 35 0 0 chrX 117056218 117056247 -59917893 + AT_rich Low_complexity Low_complexity 1 29 0 282 294 101 52 chrX 117056253 117056398 -59917742 - MIR SINE MIR -60 148 3 230 363 9 116 chrX 117056494 117056522 -59917618 - L2 LINE L2 0 3272 3243 1848 132 54 3 chrX 117056522 117056817 -59917323 + AluSx SINE Alu 1 310 -2 230 363 9 116 chrX 117056817 117057116 -59917024 - L2 LINE L2 -29 3243 2980 323 266 120 45 chrX 117058497 117059198 -59914942 + L1MC4a LINE L1 5307 5954 -1854 189 0 0 0 chrX 117059198 117059219 -59914921 + (GA)n Simple_repeat Simple_repeat 1 21 0 323 266 120 45 chrX 117059219 117059729 -59914411 + L1MC4a LINE L1 5954 6643 -1165 1013 212 0 0 chrX 117059733 117059917 -59914223 + FRAM SINE Alu 1 176 0 13699 179 44 14 chrX 117060170 117066061 -59908079 + L1PB1 LINE L1 634 6865 -2 346 311 47 97 chrX 117066065 117066406 -59907734 + HAL1b LINE L1 103 426 -922 1551 60 0 0 chrX 117066586 117066787 -59907353 + L1PA5 LINE L1 5954 6154 0 360 312 48 57 chrX 117067496 117067810 -59906330 + L1ME LINE L1 5056 5366 -780 278 295 48 58 chrX 117067878 117067929 -59906211 + L1ME LINE L1 5483 5533 -588 947 40 0 16 chrX 117067929 117068053 -59906087 + L1PA4 LINE L1 6034 6155 0 278 295 48 58 chrX 117068053 117068208 -59905932 + L1ME LINE L1 5533 5687 -434 734 274 61 33 chrX 117068221 117068466 -59905674 - MIR SINE MIR 0 262 11 229 243 84 28 chrX 117068496 117068603 -59905537 + L1ME LINE L1 5770 5882 -239 5735 243 60 45 chrX 117070064 117071831 -59902309 - L1M4c LINE L1 -4586 2373 566 371 21 21 0 chrX 117071831 117071879 -59902261 + (CA)n Simple_repeat Simple_repeat 1 49 0 5735 243 60 45 chrX 117071879 117072446 -59901694 - L1M4c LINE L1 -6393 566 9 772 274 29 29 chrX 117073947 117074188 -59899952 + MIR SINE MIR 8 248 -14 2051 102 20 3 chrX 117074642 117074936 -59899204 - AluSx SINE Alu -13 299 1 689 231 0 46 chrX 117074964 117075159 -59898981 - L1MB5 LINE L1 0 6174 5989 1380 177 76 22 chrX 117075159 117075436 -59898704 - MSTA LTR MaLR -136 292 1 3208 247 46 30 chrX 117075436 117076520 -59897620 - L1M4 LINE L1 -1346 4800 3699 1351 273 33 28 chrX 117076522 117076914 -59897226 + L1MB1 LINE L1 413 806 -5497 477 0 0 0 chrX 117077019 117077072 -59897068 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 2464 242 78 8 chrX 117077160 117078174 -59895966 + L1MB1 LINE L1 824 1787 -4516 10377 224 45 15 chrX 117078242 117078438 -59895702 + L1MB1 LINE L1 2017 2206 -4176 1500 183 10 92 chrX 117078438 117078831 -59895309 - MLT1A1 LTR MaLR 0 365 5 10377 224 45 15 chrX 117078831 117081711 -59892429 + L1MB1 LINE L1 2206 5193 -1189 16347 171 30 30 chrX 117081712 117086938 -59887202 + L1PA14 LINE L1 12 4774 -2810 7286 149 17 15 chrX 117086926 117089059 -59885081 + L1PA14 LINE L1 5446 7593 -6 * 4093 188 30 10 chrX 117089075 117090189 -59883951 + L1MB1 LINE L1 5178 6313 -91 3666 226 216 30 chrX 117090193 117091628 -59882512 - L1M3e LINE L1 -5028 2002 301 254 156 62 62 chrX 117091628 117091692 -59882448 - L1M3e LINE L1 -6452 578 515 2546 136 52 9 chrX 117091757 117092220 -59881920 - L1MA5 LINE L1 0 6300 5818 5163 86 6 7 chrX 117092227 117092940 -59881200 - L1PA8 LINE L1 0 6172 5461 20966 59 42 0 chrX 117092941 117095715 -59878425 + L1P LINE L1 426 3316 -2830 5933 35 0 0 chrX 117095711 117096425 -59877715 + L1P LINE L1 4050 4763 -1383 * 210 289 0 134 chrX 117096591 117096733 -59877407 + L2 LINE L2 3150 3272 0 1512 151 7 79 chrX 117096782 117097131 -59877009 + AluJo SINE Alu 1 327 0 234 62 0 0 chrX 117097606 117097638 -59876502 + (CA)n Simple_repeat Simple_repeat 2 33 0 854 251 87 99 chrX 117097987 117098402 -59875738 + MLT1F LTR MaLR 1 410 -132 2496 232 34 10 chrX 117098402 117099153 -59874987 - L1M4 LINE L1 -2019 4127 3176 7282 46 4 0 chrX 117099255 117100191 -59873949 + L1PA5 LINE L1 2373 3312 -2834 10915 39 0 1 chrX 117100191 117102287 -59871853 + L1PA5 LINE L1 4050 6146 -8 38 22 0 0 chrX 117102287 117102332 -59871808 + AT_rich Low_complexity Low_complexity 1 45 0 16219 123 6 8 chrX 117102332 117105053 -59869087 - L1PA8A LINE L1 -656 5790 3076 2711 187 79 43 chrX 117105050 117106164 -59867976 - L1PA8A LINE L1 -4528 1933 717 * 2645 198 6 10 chrX 117106169 117106674 -59867466 - L1PA8A LINE L1 -5372 503 1 1914 120 40 70 chrX 117106676 117106712 -59867428 - L1MA5 LINE L1 -468 5832 5796 333 0 0 0 chrX 117106712 117106749 -59867391 + (TG)n Simple_repeat Simple_repeat 2 38 0 1914 120 40 70 chrX 117106749 117107086 -59867054 - L1MA5 LINE L1 -504 5796 5470 465 328 10 36 chrX 117108108 117108300 -59865840 + MIR SINE MIR 65 251 -11 183 80 0 0 chrX 117108707 117108732 -59865408 + (CAA)n Simple_repeat Simple_repeat 1 25 0 907 298 0 8 chrX 117108738 117108976 -59865164 - MIR SINE MIR -12 250 15 1460 272 91 91 chrX 117109015 117109610 -59864530 - MLT1G LTR MaLR 0 590 1 303 228 25 0 chrX 117110393 117110472 -59863668 - MLT1F LTR MaLR 0 542 462 271 263 0 25 chrX 117110679 117110759 -59863381 - MLT1H LTR MaLR -378 171 94 567 300 30 15 chrX 117111578 117111659 -59862481 - MIR SINE MIR -3 259 181 2248 161 95 0 chrX 117111659 117112050 -59862090 + MSTC LTR MaLR 1 428 0 567 300 30 15 chrX 117112050 117112168 -59861972 - MIR SINE MIR -81 181 57 180 111 0 0 chrX 117112320 117112347 -59861793 + (GGGTG)n Simple_repeat Simple_repeat 4 30 0 2207 51 0 109 chrX 117113151 117113482 -59860658 + AluY SINE Alu 1 295 -16 1355 79 0 0 chrX 117113482 117113646 -59860494 + AluSq SINE Alu 134 297 -16 546 231 184 0 chrX 117113737 117113884 -59860256 - MER58B DNA MER1_type -1 340 167 1100 261 39 31 chrX 117114644 117115027 -59859113 + L1MC3 LINE L1 4 389 -5656 7704 230 76 30 chrX 117115074 117115531 -59858609 + L1MC3 LINE L1 2435 2869 -5334 2334 174 21 5 chrX 117115531 117115956 -59858184 + MSTB1 LTR MaLR 1 432 0 7704 230 76 30 chrX 117115956 117118042 -59856098 + L1MC3 LINE L1 2869 4857 -3346 1228 154 18 0 chrX 117118042 117118263 -59855877 - L1MA7 LINE L1 0 6291 6067 7704 230 76 30 chrX 117118263 117119026 -59855114 + L1MC3 LINE L1 4857 5583 -2620 192 40 0 0 chrX 117119026 117119051 -59855089 + (CA)n Simple_repeat Simple_repeat 2 26 0 7704 230 76 30 chrX 117119051 117119365 -59854775 + L1MC3 LINE L1 5583 5881 -2322 2113 124 13 3 chrX 117119365 117119672 -59854468 + AluSg SINE Alu 1 310 0 7704 230 76 30 chrX 117119672 117120718 -59853422 + L1MC3 LINE L1 5881 7303 -900 360 0 0 0 chrX 117120718 117120758 -59853382 + (CA)n Simple_repeat Simple_repeat 2 41 0 7704 230 76 30 chrX 117120758 117120986 -59853154 + L1MC3 LINE L1 7303 7519 -684 1269 159 108 78 chrX 117120987 117121321 -59852819 - MER2 DNA MER2_type -1 344 1 227 310 10 30 chrX 117121321 117121421 -59852719 + MLT1F1 LTR MaLR 37 134 -433 2902 145 53 30 chrX 117121422 117121691 -59852449 + L1MC3 LINE L1 7200 7461 -324 2070 113 22 72 chrX 117121691 117122105 -59852035 + L1MA7 LINE L1 5899 6291 0 2902 145 53 30 chrX 117122105 117122400 -59851740 + L1MC3 LINE L1 7461 7777 -8 1502 150 90 8 chrX 117122408 117122562 -59851578 - AluJo SINE Alu -24 288 148 189 0 0 0 chrX 117122562 117122583 -59851557 + (TG)n Simple_repeat Simple_repeat 2 22 0 1502 150 90 8 chrX 117122583 117122694 -59851446 - AluJo SINE Alu -164 148 1 339 360 7 15 chrX 117123873 117124009 -59850131 - MER5A DNA MER1_type 0 189 55 * 469 277 0 17 chrX 117123898 117124017 -59850123 + MER5A DNA MER1_type 37 153 -36 8064 62 2 2 chrX 117124043 117125102 -59849038 - L1P LINE L1 -867 5279 4221 903 60 30 0 chrX 117126463 117126597 -59847543 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 463 363 29 40 chrX 117127333 117127456 -59846684 - MIR SINE MIR -2 260 137 2142 161 39 5 chrX 117127456 117127840 -59846300 + MLT2C1 LTR ERVL 1 397 0 463 363 29 40 chrX 117127840 117127975 -59846165 - MIR SINE MIR -125 137 8 21 36 0 0 chrX 117128076 117128104 -59846036 + AT_rich Low_complexity Low_complexity 1 28 0 732 281 71 8 chrX 117128116 117128354 -59845786 - MIR SINE MIR 0 262 10 382 328 151 0 chrX 117128635 117128821 -59845319 + MIR SINE MIR 13 226 -36 287 314 40 16 chrX 117129095 117129219 -59844921 - L2 LINE L2 0 3272 3146 667 259 90 50 chrX 117129269 117129470 -59844670 - MIR SINE MIR -5 257 49 1292 236 93 81 chrX 117129729 117130224 -59843916 - MLT1F1 LTR MaLR 0 567 67 207 204 0 0 chrX 117130259 117130303 -59843837 + T-rich Low_complexity Low_complexity 2 45 0 13818 160 15 4 chrX 117130307 117133972 -59840168 - L1MA1 LINE L1 -4 6298 2588 851 107 23 0 chrX 117134183 117134314 -59839826 - L1PB2 LINE L1 -8 6143 6010 4435 152 20 2 chrX 117134335 117135672 -59838468 - L1PB2 LINE L1 -362 5789 4436 695 294 15 20 chrX 117137967 117138164 -59835976 + MIR SINE MIR 19 214 -48 250 272 158 26 chrX 117138365 117138479 -59835661 + L2 LINE L2 3137 3265 -7 848 287 33 4 chrX 117138613 117138857 -59835283 - MIR SINE MIR -9 253 3 1349 182 51 58 chrX 117140752 117141105 -59833035 + MLT1C LTR MaLR 115 467 0 202 267 241 26 chrX 117141665 117141781 -59832359 - MER5A DNA MER1_type -1 188 48 * 241 304 8 72 chrX 117141777 117141833 -59832307 - L3 LINE CR1 -1 1576 1531 742 176 15 0 chrX 117141833 117141964 -59832176 + FLAM_A SINE Alu 1 133 0 241 304 8 72 chrX 117141964 117142032 -59832108 - L3 LINE CR1 -46 1531 1460 279 269 106 0 chrX 117142093 117142197 -59831943 + MIR SINE MIR 27 141 -67 771 222 102 40 chrX 117142215 117142440 -59831700 + MIR SINE MIR 2 240 -22 207 224 9 122 chrX 117142459 117142566 -59831574 + MIR SINE MIR 129 223 -39 265 352 201 11 chrX 117142593 117142772 -59831368 - L3 LINE CR1 -242 1335 1123 370 318 73 0 chrX 117142792 117142902 -59831238 - L2 LINE L2 -8 3264 3147 523 323 208 45 chrX 117142971 117143433 -59830707 - L3 LINE CR1 -550 1027 491 675 299 15 60 chrX 117143446 117143714 -59830426 - MIR SINE MIR -1 261 6 498 323 57 35 chrX 117143735 117143964 -59830176 - L3 LINE CR1 -1201 376 143 52 69 0 0 chrX 117144816 117144917 -59829223 + AT_rich Low_complexity Low_complexity 1 101 0 916 338 46 37 chrX 117144920 117145376 -59828764 - L2 LINE L2 -16 3297 2838 238 282 14 0 chrX 117145457 117145528 -59828612 - MER103 DNA DNA -87 79 8 327 274 116 0 chrX 117146227 117146322 -59827818 + MIR SINE MIR 1 106 -156 891 218 51 0 chrX 117146327 117146524 -59827616 + MER3 DNA MER1_type 3 209 0 212 211 202 46 chrX 117147903 117148012 -59826128 - L2 LINE L2 -1 3312 3187 23 0 0 0 chrX 117148041 117148064 -59826076 + AT_rich Low_complexity Low_complexity 1 23 0 338 279 70 0 chrX 117148067 117148153 -59825987 - L2 LINE L2 -21 3251 3160 354 403 0 5 chrX 117148558 117148749 -59825391 - L2 LINE L2 -575 2739 2550 353 300 0 20 chrX 117149002 117149102 -59825038 - L2 LINE L2 -8 3305 3208 2789 176 38 6 chrX 117149122 117149672 -59824468 + L1PB4 LINE L1 5589 6156 0 1055 298 133 15 chrX 117149857 117150463 -59823677 - L2 LINE L2 -4 3309 2620 628 273 0 0 chrX 117150654 117150793 -59823347 - L2 LINE L2 0 3272 3134 1940 106 29 71 chrX 117151342 117151653 -59822487 - AluSx SINE Alu -14 298 1 323 385 14 7 chrX 117151656 117151804 -59822336 + L2 LINE L2 3119 3267 -5 308 380 66 15 chrX 117151871 117152146 -59821994 - L2 LINE L2 -188 3084 2798 260 370 11 8 chrX 117152201 117152319 -59821821 + MIR SINE MIR 26 113 -95 297 284 50 35 chrX 117152335 117152476 -59821664 - L2 LINE L2 -971 2343 2201 2700 96 11 8 chrX 117153020 117153394 -59820746 + THE1C LTR MaLR 1 375 0 4333 90 55 75 chrX 117153394 117154124 -59820016 + THE1C-int LTR MaLR 1 715 -865 2322 99 50 12 chrX 117154131 117154473 -59819667 + THE1C LTR MaLR 21 375 0 200 194 0 0 chrX 117155698 117155729 -59818411 - MIR SINE MIR -153 109 79 473 344 32 23 chrX 117156253 117156471 -59817669 - MIR SINE MIR -31 231 12 471 297 57 11 chrX 117156761 117156936 -59817204 - MLT1J LTR MaLR -59 452 270 802 311 96 31 chrX 117157067 117157485 -59816655 - L1MEd LINE L1 -5593 526 82 390 235 96 26 chrX 117157485 117157600 -59816540 + L2 LINE L2 3189 3311 -2 406 135 10 104 chrX 117157600 117157696 -59816444 - L1MEd LINE L1 -6030 89 3 552 197 67 9 chrX 117158065 117158244 -59815896 - MIR SINE MIR -12 250 7 723 278 47 39 chrX 117159145 117159400 -59814740 - MIR SINE MIR -2 260 4 190 329 29 0 chrX 117159436 117159506 -59814634 - L2 LINE L2 -8 3264 3193 209 325 137 8 chrX 117159854 117159971 -59814169 - L2 LINE L2 -2 3270 3139 185 253 53 63 chrX 117160110 117160205 -59813935 - L2 LINE L2 -247 3025 2932 639 280 101 18 chrX 117160409 117160627 -59813513 + MIR SINE MIR 25 260 -2 2386 129 0 0 chrX 117160779 117161142 -59812998 - L1PB1 LINE L1 -79 6072 5710 500 120 0 22 chrX 117161142 117161232 -59812908 + L1PB1 LINE L1 6059 6148 -3 417 179 53 29 chrX 117161929 117162132 -59812008 - L1MA9 LINE L1 -1 6311 6007 321 26 0 0 chrX 117162150 117162188 -59811952 + (CATTT)n Simple_repeat Simple_repeat 2 39 0 235 259 0 19 chrX 117162201 117162255 -59811885 - MIR SINE MIR -180 82 30 1336 154 47 139 chrX 117162747 117162786 -59811354 + MLT1A1 LTR MaLR 1 42 -323 1507 89 44 27 chrX 117162786 117163011 -59811129 - MER30 DNA MER1_type 0 230 2 1336 154 47 139 chrX 117163011 117163373 -59810767 + MLT1A1 LTR MaLR 42 365 0 258 309 171 4 chrX 117163567 117163813 -59810327 + L3 LINE CR1 704 990 -587 183 302 16 32 chrX 117163811 117163874 -59810266 - L2 LINE L2 -1 3312 3251 * 377 284 16 0 chrX 117163875 117164002 -59810138 + MER97b DNA MER1_type? 51 179 -874 361 225 0 12 chrX 117164111 117164191 -59809949 + MER112 DNA MER1_type 3 81 -179 249 119 68 0 chrX 117164197 117164256 -59809884 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 378 274 11 91 chrX 117164293 117164479 -59809661 + MER112 DNA MER1_type 81 251 -9 14536 146 20 6 chrX 117165561 117166073 -59808067 - Tigger1 DNA MER2_type 0 2418 1915 2214 172 2 48 chrX 117166073 117166527 -59807613 - Tigger2a DNA MER2_type -1 433 1 14536 146 20 6 chrX 117166527 117168397 -59805743 - Tigger1 DNA MER2_type -503 1915 1 1645 227 44 42 chrX 117168690 117169059 -59805081 - MLT2B1 LTR ERVL 0 520 148 339 78 0 0 chrX 117169059 117169110 -59805030 + (CA)n Simple_repeat Simple_repeat 2 52 0 1645 227 44 42 chrX 117169110 117169259 -59804881 - MLT2B1 LTR ERVL -372 148 1 2561 237 29 7 chrX 117171009 117171603 -59802537 + MER90 LTR ERV1 3 609 -5 555 246 29 29 chrX 117172025 117172163 -59801977 - L2 LINE L2 -17 3296 3159 345 293 19 112 chrX 117175037 117175107 -59799033 - MER5A DNA MER1_type 0 189 114 1843 167 3 0 chrX 117175107 117175395 -59798745 + AluJo SINE Alu 1 289 -23 345 293 19 112 chrX 117175395 117175529 -59798611 - MER5A DNA MER1_type -75 114 4 201 344 0 0 chrX 117175851 117175912 -59798228 - MIR3 SINE MIR -9 199 139 371 219 24 0 chrX 117176544 117176626 -59797514 + L2 LINE L2 1964 2047 -1267 324 0 0 0 chrX 117176632 117176668 -59797472 + (TAA)n Simple_repeat Simple_repeat 2 37 0 569 247 45 50 chrX 117177037 117177246 -59796894 - MIR SINE MIR -6 256 40 195 152 0 0 chrX 117177823 117177869 -59796271 + T-rich Low_complexity Low_complexity 1 46 0 233 231 19 0 chrX 117178032 117178084 -59796056 + CT-rich Low_complexity Low_complexity 1 53 0 25 0 0 0 chrX 117178567 117178592 -59795548 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chrX 117178919 117178947 -59795193 + AT_rich Low_complexity Low_complexity 1 28 0 449 262 0 9 chrX 117179653 117179760 -59794380 + MIR SINE MIR 51 156 -106 4674 199 21 14 chrX 117179770 117180862 -59793278 - L1PB1 LINE L1 -918 5228 4129 6045 87 20 14 chrX 117180862 117181781 -59792359 + L1PB1 LINE L1 5227 6151 0 25 51 0 0 chrX 117181783 117181822 -59792318 + AT_rich Low_complexity Low_complexity 1 39 0 276 30 0 0 chrX 117182193 117182226 -59791914 + (TG)n Simple_repeat Simple_repeat 1 33 0 246 62 0 0 chrX 117182269 117182301 -59791839 + (TC)n Simple_repeat Simple_repeat 1 32 0 2186 244 100 11 chrX 117182492 117183196 -59790944 + L2 LINE L2 2033 2891 -423 1255 274 61 35 chrX 117183196 117183655 -59790485 + MLT1E LTR MaLR 1 471 -122 438 283 8 0 chrX 117183770 117183890 -59790250 + MLT1E LTR MaLR 422 542 0 758 243 6 28 chrX 117183892 117184073 -59790067 + L2 LINE L2 2898 3074 -239 810 127 0 0 chrX 117184078 117184196 -59789944 + FLAM_C SINE Alu 1 118 -15 964 126 11 11 chrX 117184200 117184374 -59789766 + (GGAAA)n Simple_repeat Simple_repeat 3 176 0 709 272 34 5 chrX 117184536 117184742 -59789398 + L2 LINE L2 3102 3313 0 889 280 179 64 chrX 117184994 117185540 -59788600 - L2 LINE L2 -721 2593 1985 713 265 49 26 chrX 117185547 117185953 -59788187 + LTR16B LTR ERVL 7 462 -2 3644 303 100 27 chrX 117185959 117186076 -59788064 - L2 LINE L2 -1331 1983 1876 17969 28 0 0 chrX 117186076 117188975 -59785165 - L1PA4 LINE L1 -3 6152 3254 3644 303 100 27 chrX 117188975 117189375 -59784765 - L2 LINE L2 -1438 1876 1507 2171 106 0 0 chrX 117189375 117189692 -59784448 - AluY SINE Alu 0 317 1 3644 303 100 27 chrX 117189692 117190913 -59783227 - L2 LINE L2 -1807 1507 94 288 75 0 0 chrX 117190951 117190991 -59783149 + MADE1 DNA Mariner 1 40 -40 5373 69 1 0 chrX 117190991 117191684 -59782456 - L1PA10 LINE L1 -10 6158 5465 5133 125 16 5 chrX 117191687 117192590 -59781550 + L1PA10 LINE L1 4562 5473 -701 313 98 20 0 chrX 117192590 117192641 -59781499 + MADE1 DNA Mariner 29 80 0 506 222 7 22 chrX 117193065 117193200 -59780940 + MER103 DNA DNA 3 135 -31 22 0 0 0 chrX 117193579 117193601 -59780539 + AT_rich Low_complexity Low_complexity 1 22 0 274 312 0 0 chrX 117194627 117194704 -59779436 - MIR SINE MIR -27 235 159 234 297 0 0 chrX 117195054 117195118 -59779022 - MIR SINE MIR -2 260 197 1438 283 85 16 chrX 117195118 117195563 -59778577 - LTR33 LTR ERVL -1 520 45 437 272 84 31 chrX 117195597 117195788 -59778352 - MIR SINE MIR -60 202 2 365 236 32 138 chrX 117195788 117195914 -59778226 + MER5B DNA MER1_type 23 134 -55 1574 173 47 0 chrX 117195914 117196016 -59778124 + AluJo SINE Alu 18 114 -198 2649 29 3 0 chrX 117196016 117196322 -59777818 + AluY SINE Alu 1 307 -4 1574 173 47 0 chrX 117196322 117196497 -59777643 + AluJo SINE Alu 114 308 -4 365 236 32 138 chrX 117196497 117196548 -59777592 + MER5B DNA MER1_type 134 189 0 228 260 73 26 chrX 117196571 117196653 -59777487 + MIR SINE MIR 98 181 -60 569 310 85 15 chrX 117197068 117197339 -59776801 + L2 LINE L2 2172 2461 -853 334 211 112 62 chrX 117197576 117197737 -59776403 - L1MC4a LINE L1 -1731 6077 5909 27 0 0 0 chrX 117197747 117197774 -59776366 + AT_rich Low_complexity Low_complexity 1 27 0 301 246 123 23 chrX 117198240 117198370 -59775770 + L1ME LINE L1 5537 5679 -442 6002 113 7 22 chrX 117198559 117199101 -59775039 - L1PA15 LINE L1 -7 6158 5609 563 66 13 0 chrX 117199101 117199177 -59774963 - MADE1 DNA Mariner -3 77 1 6002 113 7 22 chrX 117199177 117200030 -59774110 - L1PA15 LINE L1 -556 5609 4786 282 29 0 0 chrX 117200030 117200065 -59774075 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 6002 113 7 22 chrX 117200065 117200629 -59773511 - L1PA15 LINE L1 -1379 4786 4215 245 196 0 0 chrX 117200636 117200687 -59773453 + L1 LINE L1 3516 3566 -2580 1094 286 37 7 chrX 117200704 117201109 -59773031 + L1PB1 LINE L1 135 551 -6312 2064 180 125 18 chrX 117201136 117201641 -59772499 + L1PB1 LINE L1 605 1163 -5700 15122 197 20 8 chrX 117201658 117203109 -59771031 + L1PB1 LINE L1 1332 2764 -4103 2394 79 10 0 chrX 117203109 117203412 -59770728 + AluY SINE Alu 1 306 -5 15122 197 20 8 chrX 117203412 117207384 -59766756 + L1PB1 LINE L1 2764 6867 0 7260 213 18 7 chrX 117207385 117209031 -59765109 - L1P LINE L1 -1922 4224 2561 229 250 67 8 chrX 117209235 117209355 -59764785 + L1ME4a LINE L1 5975 6101 -20 636 211 86 0 chrX 117209533 117209685 -59764455 + L1MB5 LINE L1 6010 6174 0 1297 223 106 51 chrX 117210229 117210472 -59763668 + L1ME3A LINE L1 5638 5866 -304 432 0 0 0 chrX 117210472 117210520 -59763620 + (TA)n Simple_repeat Simple_repeat 2 49 0 1297 223 106 51 chrX 117210520 117210776 -59763364 + L1ME3A LINE L1 5866 6170 0 288 53 0 0 chrX 117212154 117212192 -59761948 + (TC)n Simple_repeat Simple_repeat 1 38 0 785 313 140 39 chrX 117212196 117213144 -59760996 + L2 LINE L2 1606 2649 -665 933 315 42 30 chrX 117214802 117215326 -59758814 + HAL1 LINE L1 48 577 -1930 461 326 92 22 chrX 117215582 117215809 -59758331 + MIR SINE MIR 16 258 -4 1389 106 166 2 chrX 117216244 117216535 -59757605 + L1MA5A LINE L1 5953 6287 -10 513 283 169 55 chrX 117216595 117216980 -59757160 - MLT1H LTR MaLR -13 536 108 270 136 0 0 chrX 117217172 117217216 -59756924 + (T)n Simple_repeat Simple_repeat 1 44 0 309 339 36 36 chrX 117219045 117219266 -59754874 + L2 LINE L2 2736 2956 -358 22 0 0 0 chrX 117219660 117219682 -59754458 + AT_rich Low_complexity Low_complexity 1 22 0 227 79 26 0 chrX 117220589 117220627 -59753513 + (CA)n Simple_repeat Simple_repeat 2 40 0 498 61 0 0 chrX 117221455 117221521 -59752619 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 489 264 27 27 chrX 117222287 117222435 -59751705 + MER5A DNA MER1_type 39 186 -3 2218 71 0 77 chrX 117222752 117223075 -59751065 + AluSx SINE Alu 1 298 -14 308 310 83 57 chrX 117223319 117223675 -59750465 + L2 LINE L2 2731 3089 -183 325 213 0 62 chrX 117223704 117223784 -59750356 + L2 LINE L2 3234 3308 -5 180 111 0 0 chrX 117223809 117223836 -59750304 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 597 231 40 89 chrX 117224554 117224779 -59749361 + MIR SINE MIR 8 221 -41 693 323 31 28 chrX 117224861 117225115 -59749025 + MIR SINE MIR 8 262 0 336 297 11 0 chrX 117225549 117225640 -59748500 + L3 LINE CR1 1483 1574 -3 362 273 0 0 chrX 117225650 117225727 -59748413 + MIR SINE MIR 77 153 -55 244 324 0 0 chrX 117226551 117226625 -59747515 - MIR SINE MIR -4 258 185 1990 139 121 21 chrX 117226760 117227149 -59746991 + MSTA LTR MaLR 1 428 0 278 311 96 15 chrX 117227393 117227528 -59746612 - L2 LINE L2 -639 2675 2530 2024 203 80 23 chrX 117229440 117229918 -59744222 + MLT1D LTR MaLR 1 505 0 273 211 57 163 chrX 117230176 117230299 -59743841 - MIR SINE MIR -43 219 110 224 339 0 18 chrX 117231337 117231393 -59742747 + L2 LINE L2 3035 3089 -183 1714 160 93 9 chrX 117231491 117231835 -59742305 - THE1C LTR MaLR 0 375 3 6890 61 18 0 chrX 117231955 117232919 -59741221 - L1PA7 LINE L1 -2 6152 5181 2861 9 0 9 chrX 117232935 117233256 -59740884 + AluYb8 SINE Alu 1 318 0 6963 52 13 0 chrX 117233271 117234454 -59739686 + L1PA7 LINE L1 4871 6151 -3 279 188 0 59 chrX 117234739 117234824 -59739316 - L1M4 LINE L1 -2154 3992 3913 482 250 26 0 chrX 117234845 117234961 -59739179 + MER5B DNA MER1_type 60 178 0 195 42 0 0 chrX 117236903 117236927 -59737213 + (TC)n Simple_repeat Simple_repeat 2 25 0 216 97 0 0 chrX 117236953 117236984 -59737156 + (CA)n Simple_repeat Simple_repeat 2 32 0 284 111 0 0 chrX 117236988 117237024 -59737116 + tRNA-Met-e tRNA tRNA 1 36 -39 341 167 0 12 chrX 117237024 117237108 -59737032 + (TA)n Simple_repeat Simple_repeat 2 84 0 19821 26 0 2 chrX 117237156 117240402 -59733738 + L1PA3 LINE L1 2901 6142 -13 210 37 0 0 chrX 117240402 117240429 -59733711 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 19821 26 0 2 chrX 117240429 117240442 -59733698 + L1PA3 LINE L1 6142 6154 -1 363 216 9 72 chrX 117240708 117240819 -59733321 + L1ME4a LINE L1 5955 6058 -63 185 0 0 39 chrX 117240870 117240896 -59733244 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2095 123 0 7 chrX 117240900 117241201 -59732939 - AluSx SINE Alu -13 299 1 216 0 0 0 chrX 117241220 117241244 -59732896 + (A)n Simple_repeat Simple_repeat 1 24 0 * 293 67 0 22 chrX 117241242 117241287 -59732853 + (GGGAA)n Simple_repeat Simple_repeat 4 47 0 239 322 11 11 chrX 117241289 117241379 -59732761 - MIR SINE MIR -78 130 41 331 275 113 6 chrX 117241438 117241598 -59732542 - L1ME4a LINE L1 -4 6117 5941 313 248 90 53 chrX 117241616 117241749 -59732391 - L1ME4a LINE L1 -238 5883 5746 233 229 24 12 chrX 117242884 117242967 -59731173 + L1MC4 LINE L1 6609 6692 -1350 1464 201 58 0 chrX 117243422 117243700 -59730440 + AluJo SINE Alu 3 296 -16 384 232 68 51 chrX 117243873 117244050 -59730090 - L1ME4a LINE L1 -1319 4827 4648 1088 147 61 0 chrX 117244761 117244959 -59729181 + Tigger2 DNA MER2_type 1 210 -2508 792 167 76 0 chrX 117244958 117245102 -59729038 + Tigger2 DNA MER2_type 2564 2718 0 * 840 301 37 47 chrX 117245131 117245762 -59728378 - L1MC4a LINE L1 -769 5377 4742 2184 74 0 7 chrX 117245762 117246058 -59728082 + L1PA13 LINE L1 5866 6159 -4 840 301 37 47 chrX 117246058 117246112 -59728028 - L1MC4a LINE L1 -1404 4742 5209 2183 136 3 0 chrX 117246112 117246421 -59727719 - AluSx SINE Alu -2 310 1 840 301 37 47 chrX 117246421 117246558 -59727582 - L1MC4a LINE L1 -936 5210 5073 349 348 50 46 chrX 117247064 117247323 -59726817 - HAL1 LINE L1 -1450 1057 798 495 270 20 78 chrX 117247785 117247989 -59726151 + MIR SINE MIR 16 207 -55 9355 144 9 6 chrX 117248805 117251168 -59722972 + L1PA13 LINE L1 3788 6155 -8 280 238 48 0 chrX 117251381 117251444 -59722696 + L2 LINE L2 3243 3308 -5 332 275 95 74 chrX 117251447 117251731 -59722409 + L1M4 LINE L1 3682 3971 -2175 314 342 158 9 chrX 117251761 117252103 -59722037 + L1M4 LINE L1 4027 4419 -1727 310 305 5 27 chrX 117252155 117252342 -59721798 + L1M4 LINE L1 4500 4682 -1464 208 227 0 0 chrX 117252398 117252442 -59721698 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 381 338 31 40 chrX 117252532 117252757 -59721383 - MIR SINE MIR -38 224 2 237 330 17 62 chrX 117252851 117253027 -59721113 - L2 LINE L2 0 3313 3146 1521 195 18 50 chrX 117253056 117253395 -59720745 + MLT1A1 LTR MaLR 38 365 0 2316 62 16 29 chrX 117253449 117253756 -59720384 - AluY SINE Alu -8 303 1 788 287 15 32 chrX 117253783 117254032 -59720108 - MIR SINE MIR 0 262 19 484 347 116 30 chrX 117254481 117254998 -59719142 - L2 LINE L2 -14 3258 2709 622 312 143 23 chrX 117255660 117255961 -59718179 - MLT1K LTR MaLR -68 520 184 498 272 22 22 chrX 117256061 117256197 -59717943 - MIR SINE MIR -126 136 1 276 245 309 7 chrX 117256626 117256765 -59717375 + MIR SINE MIR 68 248 -14 25 31 0 0 chrX 117258279 117258311 -59715829 + AT_rich Low_complexity Low_complexity 1 32 0 314 336 75 81 chrX 117258889 117259422 -59714718 + L2 LINE L2 2734 3261 -11 225 0 0 0 chrX 117259704 117259729 -59714411 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 405 0 0 0 chrX 117260258 117260303 -59713837 + (TG)n Simple_repeat Simple_repeat 2 46 0 745 252 92 14 chrX 117261465 117261683 -59712457 + MIR SINE MIR 20 254 -8 23 0 0 0 chrX 117262855 117262878 -59711262 + AT_rich Low_complexity Low_complexity 1 23 0 477 321 115 14 chrX 117263080 117263298 -59710842 - MIR SINE MIR -1 261 22 878 111 111 6 chrX 117263355 117263526 -59710614 + MER53 DNA DNA 1 189 0 208 274 0 0 chrX 117265069 117265120 -59709020 - MIR SINE MIR -75 133 83 2485 84 0 0 chrX 117265444 117265754 -59708386 - AluSp SINE Alu -3 310 1 393 284 0 10 chrX 117265851 117265953 -59708187 + MIR SINE MIR 20 120 -142 706 273 68 32 chrX 117265953 117266202 -59707938 + MIR SINE MIR 2 259 -3 727 178 61 37 chrX 117266203 117266366 -59707774 - L2 LINE L2 -4 3309 3143 239 163 0 20 chrX 117267200 117267249 -59706891 - MIR3 SINE MIR -8 200 153 1890 214 35 49 chrX 117267521 117268030 -59706110 + MLT1D LTR MaLR 4 505 0 507 229 223 11 chrX 117268131 117268306 -59705834 - L3 LINE CR1 -22 1555 1344 629 361 84 43 chrX 117268484 117269266 -59704874 + L2 LINE L2 1846 2659 -655 1028 184 9 40 chrX 117269421 117269644 -59704496 - MER20 DNA MER1_type 0 219 4 1030 304 119 35 chrX 117270441 117271179 -59702961 - L2 LINE L2 0 3313 2517 534 252 88 6 chrX 117271176 117271335 -59702805 + MIR SINE MIR 74 245 -17 * 27 0 0 0 chrX 117271351 117271378 -59702762 + AT_rich Low_complexity Low_complexity 1 27 0 311 268 72 20 chrX 117271395 117271549 -59702591 + MIR SINE MIR 44 198 -64 2319 283 61 47 chrX 117272164 117272758 -59701382 - L3 LINE CR1 -2 1575 960 273 57 0 0 chrX 117272758 117272793 -59701347 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2319 283 61 47 chrX 117272793 117273160 -59700980 - L3 LINE CR1 -617 960 600 236 250 0 0 chrX 117274375 117274423 -59699717 + MER3 DNA MER1_type 41 88 -121 402 206 144 0 chrX 117274427 117274524 -59699616 - MER3 DNA MER1_type -85 124 14 220 265 163 0 chrX 117275245 117275294 -59698846 - L2 LINE L2 -15 3257 3201 745 195 45 63 chrX 117275549 117275770 -59698370 - MER112 DNA MER1_type -6 254 38 268 373 54 16 chrX 117277022 117277207 -59696933 + L2 LINE L2 2867 3058 -214 218 250 57 65 chrX 117277511 117277635 -59696505 + MIR SINE MIR 84 206 -56 192 152 0 0 chrX 117280768 117280801 -59693339 - MIR SINE MIR -78 130 98 * 433 237 54 0 chrX 117280799 117280892 -59693248 - MIR SINE MIR -113 149 52 186 309 91 0 chrX 117281128 117281183 -59692957 + MIR SINE MIR 13 72 -190 * 411 297 10 10 chrX 117281176 117281277 -59692863 - L2 LINE L2 -9 3304 3204 466 319 56 0 chrX 117281315 117281459 -59692681 + MIR SINE MIR 72 223 -39 460 114 0 0 chrX 117281534 117281604 -59692536 - L1MA2 LINE L1 0 6304 6235 1215 142 23 5 chrX 117281626 117281845 -59692295 - L1MB3 LINE L1 -2 6181 5959 251 204 19 0 chrX 117282777 117282831 -59691309 + L2 LINE L2 3257 3311 -2 565 289 59 0 chrX 117282854 117283006 -59691134 + MIR3 SINE MIR 40 200 -8 290 294 24 12 chrX 117283491 117283576 -59690564 + L2 LINE L2 3186 3271 -1 259 256 13 39 chrX 117284347 117284425 -59689715 - MIR SINE MIR -1 261 186 226 286 262 0 chrX 117285029 117285155 -59688985 + MIR3 SINE MIR 35 193 -15 257 159 0 0 chrX 117286707 117286751 -59687389 + L2 LINE L2 3264 3307 -6 228 286 40 103 chrX 117286870 117286996 -59687144 - L2 LINE L2 0 3272 3155 327 113 0 0 chrX 117288037 117288090 -59686050 + (ATG)n Simple_repeat Simple_repeat 2 54 0 249 343 14 0 chrX 117288885 117288958 -59685182 - L2 LINE L2 0 3272 3199 752 271 133 0 chrX 117288959 117289162 -59684978 - MIR SINE MIR -4 258 29 265 355 98 38 chrX 117289266 117289449 -59684691 - L2 LINE L2 -181 3091 2898 34 72 0 0 chrX 117289454 117289523 -59684617 + AT_rich Low_complexity Low_complexity 1 69 0 252 344 28 48 chrX 117289568 117289818 -59684322 - L2 LINE L2 -455 2859 2615 415 310 190 32 chrX 117289877 117290277 -59683863 - L2 LINE L2 -1004 2310 1848 235 214 0 0 chrX 117291470 117291510 -59682630 - L3 LINE CR1 -12 1565 1526 724 264 11 11 chrX 117291510 117291688 -59682452 + MER5B DNA MER1_type 1 178 0 293 296 17 35 chrX 117291956 117292071 -59682069 - L2 LINE L2 -1 3271 3159 307 227 148 11 chrX 117293265 117293353 -59680787 + MIR SINE MIR 153 252 -10 300 344 63 11 chrX 117293431 117293620 -59680520 - MIR SINE MIR -44 218 20 1026 17 0 0 chrX 117295668 117295816 -59678324 + AluY SINE Alu 170 317 0 520 266 36 7 chrX 117298861 117299000 -59675140 - MIR SINE MIR -56 206 64 251 270 40 0 chrX 117299317 117299391 -59674749 - MER5A DNA MER1_type -50 139 63 368 257 28 9 chrX 117299480 117299589 -59674551 + MER103 DNA DNA 11 121 -45 343 291 169 40 chrX 117300130 117300278 -59673862 - MER5A DNA MER1_type -1 188 22 854 296 21 8 chrX 117300707 117300950 -59673190 + MIR SINE MIR 10 255 -7 2088 137 58 33 chrX 117301022 117301351 -59672789 - MER1B DNA MER1_type 0 337 1 460 264 16 8 chrX 117301365 117301486 -59672654 + MIR SINE MIR 107 228 -34 273 246 0 0 chrX 117302400 117302461 -59671679 + GA-rich Low_complexity Low_complexity 5 65 0 420 244 8 57 chrX 117303629 117303752 -59670388 - MIR3 SINE MIR -7 201 85 378 347 89 18 chrX 117303780 117304117 -59670023 - L2 LINE L2 -1264 2050 1690 249 57 0 0 chrX 117304241 117304276 -59669864 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 599 251 62 24 chrX 117304925 117305141 -59668999 - MIR SINE MIR -37 225 6 255 232 0 29 chrX 117305550 117305619 -59668521 + MIR3 SINE MIR 142 208 0 341 309 218 12 chrX 117305839 117306004 -59668136 - MIR3 SINE MIR -6 202 4 816 244 128 8 chrX 117306738 117306972 -59667168 + MIR SINE MIR 1 262 0 751 184 104 6 chrX 117308281 117308444 -59665696 + MER97a DNA MER1_type? 1 179 -715 243 281 173 22 chrX 117309017 117309145 -59664995 + MIR SINE MIR 26 164 -65 492 278 157 16 chrX 117310282 117310473 -59663667 - MIR SINE MIR -21 241 24 484 229 119 9 chrX 117310806 117310915 -59663225 - MIR3 SINE MIR -20 188 68 566 269 77 0 chrX 117312611 117312767 -59661373 + MIR3 SINE MIR 35 202 -6 649 267 15 45 chrX 117312915 117313117 -59661023 - MIR SINE MIR -46 216 21 628 283 94 5 chrX 117313169 117313360 -59660780 - MIR SINE MIR -53 209 2 444 82 0 0 chrX 117313611 117313672 -59660468 + (TG)n Simple_repeat Simple_repeat 2 62 0 182 128 26 0 chrX 117313699 117313738 -59660402 + (TA)n Simple_repeat Simple_repeat 1 40 0 290 274 18 9 chrX 117313798 117313911 -59660229 + L1ME4a LINE L1 5812 5925 -196 406 333 62 11 chrX 117314202 117314379 -59659761 + MIR3 SINE MIR 21 206 -2 437 246 0 55 chrX 117314660 117314770 -59659370 + MIR SINE MIR 38 141 -67 189 0 0 0 chrX 117314961 117314982 -59659158 + (A)n Simple_repeat Simple_repeat 1 21 0 719 257 74 15 chrX 117315815 117316017 -59658123 - MIR SINE MIR -13 249 36 922 171 5 47 chrX 117316293 117316486 -59657654 - MIR SINE MIR -20 242 58 2201 105 10 0 chrX 117316715 117317011 -59657129 - AluSx SINE Alu -11 301 3 594 274 59 16 chrX 117317014 117317200 -59656940 - MIR3 SINE MIR -13 195 2 239 200 29 86 chrX 117318719 117318789 -59655351 + Charlie8 DNA MER1_type 1360 1425 -992 732 277 21 29 chrX 117318804 117319042 -59655098 + MIR SINE MIR 27 262 0 234 298 0 0 chrX 117319420 117319467 -59654673 + L2 LINE L2 3251 3297 -16 382 301 153 6 chrX 117319513 117319676 -59654464 - MER5A DNA MER1_type -2 187 1 682 228 146 0 chrX 117321303 117321461 -59652679 + MER5A DNA MER1_type 9 189 0 25 0 0 0 chrX 117329448 117329473 -59644667 + GC_rich Low_complexity Low_complexity 1 25 0 339 226 0 0 chrX 117329900 117330002 -59644138 + CT-rich Low_complexity Low_complexity 1 102 0 369 0 0 0 chrX 117330120 117330161 -59643979 + (GA)n Simple_repeat Simple_repeat 2 42 0 734 286 45 20 chrX 117331823 117332068 -59642072 + MIR SINE MIR 6 256 -6 184 176 0 0 chrX 117332301 117332335 -59641805 - MIR SINE MIR -11 251 218 393 317 76 7 chrX 117333460 117333605 -59640535 - L2 LINE L2 -16 3256 3102 530 310 5 16 chrX 117334484 117334671 -59639469 - MLT1L LTR MaLR 0 615 431 333 169 0 15 chrX 117335328 117335393 -59638747 - MIR SINE MIR -64 144 81 994 237 173 47 chrX 117336139 117336625 -59637515 + MLT1H LTR MaLR 3 549 0 341 333 30 15 chrX 117336668 117336800 -59637340 - MER94 DNA DNA 0 134 1 860 205 133 20 chrX 117337395 117337590 -59636550 + MER20 DNA MER1_type 1 217 -2 377 276 15 52 chrX 117337651 117337785 -59636355 + MIR SINE MIR 18 146 -62 186 162 0 59 chrX 117337818 117337886 -59636254 + GA-rich Low_complexity Low_complexity 4 67 0 877 184 13 6 chrX 117338427 117338585 -59635555 - MER45A DNA AcHobo 0 178 20 471 63 0 0 chrX 117338980 117339043 -59635097 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 288 236 0 0 chrX 117339195 117339284 -59634856 + (ATG)n Simple_repeat Simple_repeat 1 89 0 505 250 32 0 chrX 117339284 117339408 -59634732 - MIR SINE MIR -1 261 134 217 286 16 16 chrX 117339615 117339678 -59634462 + L2 LINE L2 3210 3272 0 1850 134 25 4 chrX 117339689 117339966 -59634174 + AluJb SINE Alu 1 283 -29 306 0 0 0 chrX 117339966 117340000 -59634140 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 449 230 88 68 chrX 117340588 117340736 -59633404 + L2 LINE L2 3163 3313 0 1243 129 5 10 chrX 117341676 117341877 -59632263 - L1PA16 LINE L1 -1 6165 5966 904 224 29 10 chrX 117342074 117342279 -59631861 - MIR SINE MIR -13 249 41 330 26 0 0 chrX 117342306 117342345 -59631795 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 417 39 0 0 chrX 117342344 117342395 -59631745 + (TG)n Simple_repeat Simple_repeat 2 52 0 642 249 129 22 chrX 117342744 117342969 -59631171 + MIR SINE MIR 14 262 0 531 133 11 0 chrX 117344723 117344813 -59629327 + MER94 DNA DNA 2 92 -42 589 168 190 0 chrX 117346059 117346196 -59627944 - L2 LINE L2 -2 3311 3149 1186 272 80 46 chrX 117346255 117346781 -59627359 - MLT1L LTR MaLR -6 609 66 2349 298 27 48 chrX 117346856 117347906 -59626234 - L2 LINE L2 -213 3059 2034 195 243 0 0 chrX 117347900 117347937 -59626203 - MIR SINE MIR -148 114 78 * 7802 153 67 29 chrX 117348072 117349594 -59624546 + L1MCa LINE L1 21 1600 -4826 2453 200 12 0 chrX 117349593 117350109 -59624031 - L1PB1 LINE L1 -2148 3998 3477 * 6154 149 29 25 chrX 117350114 117351860 -59622280 + L1PB1 LINE L1 4018 5782 -369 189 0 0 0 chrX 117351860 117351881 -59622259 + (TG)n Simple_repeat Simple_repeat 2 22 0 6154 149 29 25 chrX 117351881 117352251 -59621889 + L1PB1 LINE L1 5782 6149 -2 3592 119 18 11 chrX 117352275 117352889 -59621251 + L1MCa LINE L1 1694 2311 -4115 * 5083 163 40 14 chrX 117352886 117353860 -59620280 + L1MC1 LINE L1 5329 6327 -6 264 205 77 0 chrX 117353867 117353945 -59620195 - L1ME4a LINE L1 -17 6104 6021 226 281 0 18 chrX 117353976 117354033 -59620107 + CT-rich Low_complexity Low_complexity 2 57 0 554 281 40 86 chrX 117354060 117354433 -59619707 - MLT1I LTR MaLR -51 358 3 455 223 121 72 chrX 117354455 117354535 -59619605 - L1ME4a LINE L1 -207 5914 5839 2621 136 36 5 chrX 117354535 117354954 -59619186 + MSTB1 LTR MaLR 1 432 0 455 223 121 72 chrX 117354954 117355138 -59619002 - L1ME4a LINE L1 -282 5839 5637 1570 192 0 17 chrX 117355187 117355474 -59618666 - AluJo SINE Alu -30 282 1 1534 162 4 8 chrX 117355476 117355729 -59618411 - AluJo SINE Alu -22 290 39 701 232 0 13 chrX 117355733 117355888 -59618252 - AluJo SINE Alu -159 153 1 341 287 113 24 chrX 117355892 117356139 -59618001 - L1ME4a LINE L1 -2214 5594 5326 255 316 13 0 chrX 117356916 117356995 -59617145 + MIR SINE MIR 72 151 -111 193 326 105 53 chrX 117357012 117357107 -59617033 - L2 LINE L2 -22 3250 3151 790 272 50 103 chrX 117358282 117358738 -59615402 - L2 LINE L2 -656 2658 2227 684 308 40 70 chrX 117358746 117359086 -59615054 - L1MC4a LINE L1 -1897 5911 5562 835 219 72 32 chrX 117359086 117359337 -59614803 + MIR SINE MIR 2 262 0 2216 82 7 0 chrX 117359344 117359623 -59614517 - AluSp SINE Alu -30 283 3 684 308 40 70 chrX 117359623 117359729 -59614411 - L1MC4a LINE L1 -2252 5556 5471 396 267 22 22 chrX 117359749 117359884 -59614256 + L1MEc LINE L1 45 179 -6217 242 215 92 0 chrX 117360102 117360167 -59613973 - MIR SINE MIR -25 237 167 1781 158 28 0 chrX 117360198 117360489 -59613651 + AluSg SINE Alu 1 299 -11 422 254 25 25 chrX 117360517 117360639 -59613501 - MIR SINE MIR -97 165 44 347 302 260 0 chrX 117360669 117360838 -59613302 - MIR SINE MIR -39 223 11 21 0 0 0 chrX 117360939 117360960 -59613180 + AT_rich Low_complexity Low_complexity 1 21 0 2431 223 54 11 chrX 117361165 117361911 -59612229 - L1MB5 LINE L1 -260 5914 5134 537 306 100 42 chrX 117361975 117362426 -59611714 - L1MB5 LINE L1 -2688 3458 2982 4884 199 12 19 chrX 117362470 117364165 -59609975 - L1MB3 LINE L1 0 6183 4499 3175 243 32 35 chrX 117364263 117365062 -59609078 + MER21B LTR ERV1 19 815 -48 4894 174 25 7 chrX 117365081 117365870 -59608270 - L1MB3 LINE L1 -1640 4506 3694 1917 143 3 17 chrX 117365870 117366189 -59607951 - AluSx SINE Alu 0 312 1 4894 174 25 7 chrX 117366189 117366380 -59607760 - L1MB3 LINE L1 -2452 3694 3508 * 5558 152 35 18 chrX 117366378 117367983 -59606157 + L1MA7 LINE L1 4656 6285 -6 411 73 0 0 chrX 117367984 117368039 -59606101 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1775 229 30 51 chrX 117368041 117368613 -59605527 + L1ME1 LINE L1 5603 6162 -4 540 299 106 15 chrX 117368947 117369211 -59604929 + L2 LINE L2 3008 3295 -18 229 314 14 7 chrX 117369212 117369352 -59604788 - L1MB3 LINE L1 -3738 2408 2268 21 36 0 0 chrX 117369839 117369867 -59604273 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrX 117369882 117369911 -59604229 + AT_rich Low_complexity Low_complexity 1 29 0 388 276 17 35 chrX 117370402 117370518 -59603622 + MER5B DNA MER1_type 2 115 -63 28 29 0 0 chrX 117370652 117370687 -59603453 + AT_rich Low_complexity Low_complexity 1 35 0 247 316 26 9 chrX 117370894 117371008 -59603132 - L1 LINE L1 -2306 3840 3725 1097 239 5 5 chrX 117371247 117371465 -59602675 + MER58A DNA MER1_type 1 218 -6 678 140 47 67 chrX 117371559 117371709 -59602431 - L1M2 LINE L1 -4360 2489 2343 223 362 28 17 chrX 117374897 117375074 -59599066 - L2 LINE L2 -223 3049 2871 436 299 70 13 chrX 117375589 117375746 -59598394 + MIR SINE MIR 36 201 -61 3331 169 19 8 chrX 117376083 117376727 -59597413 + L1MB7 LINE L1 5515 6165 -19 984 169 0 6 chrX 117376837 117377003 -59597137 - AluSg/x SINE Alu -23 289 125 222 171 0 0 chrX 117377004 117377045 -59597095 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 226 133 0 0 chrX 117377045 117377090 -59597050 - LTR66 LTR ERVL -171 439 395 672 184 0 9 chrX 117377099 117377213 -59596927 - FLAM_C SINE Alu -30 113 1 4905 145 5 0 chrX 117377371 117378163 -59595977 - L1PB3 LINE L1 0 6154 5359 8089 169 12 18 chrX 117378163 117380535 -59593605 - L1PA13 LINE L1 0 6163 3784 6602 45 22 1 chrX 117380543 117381368 -59592772 - L1PA7 LINE L1 0 6154 5313 183 42 0 0 chrX 117381369 117381393 -59592747 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2454 72 0 58 chrX 117381394 117381740 -59592400 - MER48 LTR ERV1 -61 326 1 7309 75 7 0 chrX 117381742 117382670 -59591470 - HERVH48 LTR ERV1 -2 6652 5719 4606 84 0 0 chrX 117382666 117383275 -59590865 - HERVH48 LTR ERV1 -1214 5440 4832 * 11592 89 11 3 chrX 117383338 117384505 -59589635 - L1P3 LINE L1 -4879 1582 398 333 0 0 0 chrX 117384505 117384542 -59589598 + (CA)n Simple_repeat Simple_repeat 2 38 0 11592 89 11 3 chrX 117384542 117384943 -59589197 - L1P3 LINE L1 -6063 398 2 6464 199 11 6 chrX 117384943 117386351 -59587789 - L1PA13 LINE L1 -2355 3791 2377 * 16162 168 20 9 chrX 117386345 117393084 -59581056 - L1PA13 LINE L1 -1 6813 2 5731 151 5 12 chrX 117393122 117394733 -59579407 - L1PB3 LINE L1 -1 6153 4547 31 0 0 0 chrX 117395095 117395126 -59579014 + AT_rich Low_complexity Low_complexity 1 31 0 926 291 46 31 chrX 117395874 117396263 -59577877 + L2 LINE L2 502 896 -2418 427 296 32 8 chrX 117396263 117396388 -59577752 + L2 LINE L2 1075 1202 -2112 403 290 238 21 chrX 117397835 117398125 -59576015 + L2 LINE L2 2920 3272 0 392 253 136 39 chrX 117398367 117398521 -59575619 - MIR SINE MIR -28 234 66 385 211 0 0 chrX 117398552 117398623 -59575517 - MIR SINE MIR -146 116 46 1612 221 104 18 chrX 117398655 117399098 -59575042 - MER21B LTR ERV1 -19 844 364 323 333 48 9 chrX 117399148 117399253 -59574887 - L2 LINE L2 -16 3256 3148 1462 195 80 73 chrX 117399773 117400249 -59573891 + MLT1D LTR MaLR 27 505 0 833 118 8 0 chrX 117400298 117400425 -59573715 - L1MA2 LINE L1 -12 6292 6165 351 182 15 0 chrX 117400447 117400513 -59573627 - MER69A DNA AcHobo -87 90 24 184 330 53 11 chrX 117400598 117400692 -59573448 + L2 LINE L2 1269 1366 -1948 604 205 16 0 chrX 117400839 117400961 -59573179 + MER63 DNA MER1_type 11 760 -302 605 187 53 53 chrX 117401023 117401173 -59572967 + MER69A DNA AcHobo 24 173 -4 386 221 42 21 chrX 117401965 117402060 -59572080 + MER5A DNA MER1_type 53 149 -40 352 259 12 0 chrX 117402139 117402224 -59571916 + L2 LINE L2 3187 3272 0 557 167 33 8 chrX 117402238 117402358 -59571782 + MLT1H LTR MaLR 113 235 -270 1188 200 81 23 chrX 117402423 117402733 -59571407 + MLT1D LTR MaLR 178 505 0 617 191 170 0 chrX 117405016 117405157 -59568983 + MLT1H LTR MaLR 382 546 -3 551 245 142 20 chrX 117405809 117406013 -59568127 - MIR SINE MIR -2 260 32 284 72 0 58 chrX 117407303 117407372 -59566768 + (TTC)n Simple_repeat Simple_repeat 2 66 0 1931 138 0 7 chrX 117407379 117407661 -59566479 - AluSg SINE Alu -19 291 12 1043 193 42 5 chrX 117408279 117408491 -59565649 + MIR SINE MIR 37 256 -6 18449 159 26 14 chrX 117408504 117411521 -59562619 - L1MA2 LINE L1 0 7723 4743 7094 49 6 10 chrX 117411521 117412542 -59561598 + L1PA7 LINE L1 5132 6150 -4 18449 159 26 14 chrX 117412542 117415004 -59559136 - L1MA2 LINE L1 -2980 4743 2121 5611 109 13 10 chrX 117415004 117416347 -59557793 - L1PA14 LINE L1 -3 6158 4789 18449 159 26 14 chrX 117416347 117418311 -59555829 - L1MA2 LINE L1 -5602 2121 182 296 264 155 32 chrX 117419435 117419590 -59554550 - MIR SINE MIR -9 253 80 24 0 0 0 chrX 117420074 117420098 -59554042 + AT_rich Low_complexity Low_complexity 1 24 0 332 349 47 24 chrX 117420417 117420586 -59553554 - MIR3 SINE MIR -12 196 24 407 292 36 7 chrX 117421700 117421837 -59552303 - MIR SINE MIR -3 259 119 1318 212 108 66 chrX 117421851 117422352 -59551788 + LTR33A LTR ERVL 2 523 0 207 69 0 0 chrX 117422445 117422474 -59551666 + (TC)n Simple_repeat Simple_repeat 2 30 0 348 127 0 0 chrX 117423015 117423070 -59551070 + (GA)n Simple_repeat Simple_repeat 2 56 0 426 20 0 0 chrX 117423820 117423871 -59550269 + (CA)n Simple_repeat Simple_repeat 2 52 0 2058 157 94 8 chrX 117424133 117424527 -59549613 + MSTA LTR MaLR 1 428 0 779 96 0 0 chrX 117425048 117425163 -59548977 - L1MA6 LINE L1 0 6300 6186 750 164 0 0 chrX 117425166 117425300 -59548840 + L1MA6 LINE L1 5945 6078 -222 960 128 0 0 chrX 117425536 117425669 -59548471 - FLAM_C SINE Alu 0 133 1 375 296 48 16 chrX 117426558 117426683 -59547457 + MIR SINE MIR 20 148 -114 1596 133 8 4 chrX 117426684 117426940 -59547200 - Tigger3(Golem) DNA MER2_type 0 3037 2781 526 222 28 0 chrX 117426937 117427045 -59547095 - Tigger3(Golem) DNA MER2_type -2887 142 32 * 225 291 26 103 chrX 117427061 117427178 -59546962 + MIR SINE MIR 150 257 -5 386 260 93 20 chrX 117427774 117427924 -59546216 + MIR SINE MIR 53 213 -49 1968 201 42 21 chrX 117428237 117428715 -59545425 + MLT1D LTR MaLR 18 505 0 213 108 0 0 chrX 117430310 117430347 -59543793 + (T)n Simple_repeat Simple_repeat 1 37 0 215 208 0 21 chrX 117430845 117430893 -59543247 - L2 LINE L2 0 3272 3226 554 272 132 60 chrX 117430953 117431369 -59542771 - LTR33 LTR ERVL -70 451 6 225 283 33 0 chrX 117432245 117432305 -59541835 - Charlie8 DNA MER1_type -2355 62 1 2190 73 0 17 chrX 117432690 117433000 -59541140 - AluSc SINE Alu 0 309 8 202 277 0 0 chrX 117435186 117435233 -59538907 - MIR SINE MIR -102 160 114 202 320 175 0 chrX 117435201 117435298 -59538842 - MIR SINE MIR -62 146 33 288 20 61 0 chrX 117435402 117435451 -59538689 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 235 209 0 0 chrX 117435464 117435507 -59538633 + 5S rRNA rRNA 1 43 -78 356 224 193 68 chrX 117436005 117436166 -59537974 + MIR3 SINE MIR 27 207 -1 243 339 65 48 chrX 117437314 117437482 -59536658 + L2 LINE L2 2895 3065 -248 835 292 110 31 chrX 117437503 117438124 -59536016 - L2 LINE L2 -55 3258 2589 288 289 113 0 chrX 117488278 117488375 -59485765 + MIR3 SINE MIR 94 201 -7 4222 44 8 6 chrX 117489781 117490601 -59483539 + L1P2 LINE L1 4819 5642 -513 1883 158 10 0 chrX 117491025 117491323 -59482817 + AluSx SINE Alu 3 303 -9 260 83 0 0 chrX 117491397 117491433 -59482707 - MIR SINE MIR -64 144 109 5185 161 6 18 chrX 117493060 117494030 -59480110 - L1P LINE L1 -3269 2877 1919 445 105 53 0 chrX 117494316 117494392 -59479748 + L1MA4A LINE L1 6218 6297 -6 192 182 0 0 chrX 117494700 117494744 -59479396 + GA-rich Low_complexity Low_complexity 2 45 0 260 83 0 0 chrX 117498521 117498557 -59475583 + MIR SINE MIR 109 144 -64 1769 150 13 10 chrX 117498631 117498931 -59475209 - AluSx SINE Alu -9 303 3 716 276 57 51 chrX 117499437 117499752 -59474388 - L2 LINE L2 -635 2679 2363 369 238 7 26 chrX 117500032 117500183 -59473957 + GA-rich Low_complexity Low_complexity 3 150 0 27 29 0 0 chrX 117500321 117500355 -59473785 + AT_rich Low_complexity Low_complexity 1 34 0 191 146 24 0 chrX 117502071 117502112 -59472028 + CT-rich Low_complexity Low_complexity 2 43 0 204 158 0 0 chrX 117502167 117502205 -59471935 + (CA)n Simple_repeat Simple_repeat 2 39 0 562 255 170 35 chrX 117502277 117502503 -59471637 - MIR SINE MIR -6 256 3 417 263 205 6 chrX 117502515 117502686 -59471454 - L3 LINE CR1 -317 1260 1056 1121 72 0 6 chrX 117503066 117503232 -59470908 + (GAAA)n Simple_repeat Simple_repeat 1 165 0 237 283 20 61 chrX 117504852 117504951 -59469189 + MIR SINE MIR 168 262 0 782 106 197 101 chrX 117504971 117505159 -59468981 + MER20 DNA MER1_type 1 206 -13 183 237 31 113 chrX 117505404 117505501 -59468639 - L2 LINE L2 -173 3099 3011 3309 158 15 18 chrX 117506954 117507499 -59466641 - MER67A LTR ERV1 0 543 1 544 188 26 26 chrX 117507572 117507689 -59466451 + MIR3 SINE MIR 40 156 -52 278 313 74 68 chrX 117507692 117507855 -59466285 - L2 LINE L2 -2 3270 3107 2879 133 7 27 chrX 117507904 117508347 -59465793 - Tigger2a DNA MER2_type 0 434 1 223 330 196 39 chrX 117508905 117509539 -59464601 + L2 LINE L2 2245 2977 -337 259 252 152 33 chrX 117509640 117509791 -59464349 + L2 LINE L2 3103 3271 -42 207 191 0 0 chrX 117511132 117511179 -59462961 + (TAA)n Simple_repeat Simple_repeat 1 47 0 485 268 92 24 chrX 117511904 117512068 -59462072 + MIR SINE MIR 86 260 -2 723 191 133 11 chrX 117513299 117513487 -59460653 + MIR SINE MIR 50 260 -2 410 286 19 26 chrX 117514049 117514180 -59459960 - MIR SINE MIR -64 144 30 656 279 35 17 chrX 117514331 117514561 -59459579 - MIR SINE MIR -31 231 1 403 270 50 108 chrX 117515999 117516240 -59457900 - MIR SINE MIR -34 228 2 933 154 55 16 chrX 117516762 117516944 -59457196 - MER53 DNA DNA 0 189 1 314 162 14 0 chrX 117517783 117517857 -59456283 + (TAA)n Simple_repeat Simple_repeat 2 76 0 873 261 111 4 chrX 117517860 117518094 -59456046 - MIR SINE MIR 0 262 4 289 360 90 21 chrX 117518401 117518634 -59455506 + L2 LINE L2 2957 3205 -67 476 254 159 8 chrX 117518679 117518805 -59455335 - MIR3 SINE MIR -48 160 16 681 332 32 5 chrX 117519169 117519386 -59454754 - MIR SINE MIR -24 238 16 976 157 5 97 chrX 117519514 117519731 -59454409 - MER3 DNA MER1_type -10 199 3 31 26 0 0 chrX 117519766 117519804 -59454336 + AT_rich Low_complexity Low_complexity 1 38 0 1758 80 4 0 chrX 117519804 117520029 -59454111 - L1MA1 LINE L1 -9 6293 6068 203 333 153 2 chrX 117520378 117520523 -59453617 + MIR SINE MIR 34 143 -65 221 264 153 0 chrX 117520539 117520611 -59453529 - MER5B DNA MER1_type -95 83 1 * 292 139 0 0 chrX 117520611 117520651 -59453489 + MIR3 SINE MIR 153 192 -16 4863 146 2 1 chrX 117520988 117521766 -59452374 - L1 LINE L1 -883 5263 4482 1988 156 44 32 chrX 117521766 117522176 -59451964 + L1MA8 LINE L1 5872 6286 -5 233 245 151 0 chrX 117523614 117523667 -59450473 - MIR SINE MIR -60 148 88 1017 184 0 17 chrX 117524668 117524847 -59449293 - MER5A DNA MER1_type -12 177 2 1952 156 0 0 chrX 117525298 117525586 -59448554 + AluSx SINE Alu 1 288 -24 32912 107 6 57 chrX 117525627 117532103 -59442037 + L1PA7 LINE L1 12 6152 -2 25 51 0 0 chrX 117532103 117532142 -59441998 + AT_rich Low_complexity Low_complexity 1 39 0 307 281 9 61 chrX 117532157 117532271 -59441869 + MER5A DNA MER1_type 81 188 -1 387 0 0 0 chrX 117533261 117533304 -59440836 + (TG)n Simple_repeat Simple_repeat 2 44 0 1032 154 82 0 chrX 117534057 117534239 -59439901 + L1PA16 LINE L1 5961 6157 -9 434 221 72 40 chrX 117534376 117534551 -59439589 - MLT1L LTR MaLR -339 172 3 264 237 17 17 chrX 117534583 117534642 -59439498 - L2 LINE L2 -10 3262 3204 607 206 58 19 chrX 117536415 117536570 -59437570 - MIR SINE MIR 0 262 102 394 196 109 0 chrX 117536639 117536731 -59437409 + MLT1K LTR MaLR 485 586 -2 945 256 29 29 chrX 117536738 117536984 -59437156 - MIR SINE MIR -10 252 7 307 333 9 19 chrX 117538856 117538961 -59435179 - MIR SINE MIR -89 119 16 575 193 193 0 chrX 117539747 117539894 -59434246 + MER5A DNA MER1_type 4 183 -6 323 302 9 9 chrX 117540193 117540297 -59433843 - MIR SINE MIR 0 262 159 413 305 0 0 chrX 117540297 117540392 -59433748 + MIR SINE MIR 4 98 -164 11039 148 12 14 chrX 117540394 117543196 -59430944 - L1PA13 LINE L1 -3 6160 3368 4146 179 19 3 chrX 117543198 117543297 -59430843 - L1PA13 LINE L1 -2875 3271 3175 284 0 28 0 chrX 117543297 117543333 -59430807 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 4146 179 19 3 chrX 117543333 117544104 -59430036 - L1PA13 LINE L1 -2971 3175 2387 753 239 19 0 chrX 117544104 117544263 -59429877 + MIR SINE MIR 93 254 -8 579 300 19 19 chrX 117544243 117544403 -59429737 - MIR SINE MIR -86 176 17 * 378 262 46 22 chrX 117544919 117545054 -59429086 + MIR3 SINE MIR 48 190 -18 353 262 103 41 chrX 117545124 117545269 -59428871 + MIR SINE MIR 20 173 -89 255 61 0 0 chrX 117546881 117546914 -59427226 + (CAA)n Simple_repeat Simple_repeat 1 33 0 418 293 9 0 chrX 117546996 117547102 -59427038 + MIR3 SINE MIR 96 202 -6 288 146 0 0 chrX 117549055 117549096 -59425044 - L2 LINE L2 -16 3256 3216 621 202 138 21 chrX 117550899 117551063 -59423077 - MER5A DNA MER1_type 0 189 4 1783 124 87 7 chrX 117551777 117552052 -59422088 + AluSx SINE Alu 1 297 -15 2057 144 7 0 chrX 117553397 117553696 -59420444 + AluSx SINE Alu 3 303 -9 261 83 0 0 chrX 117553770 117553806 -59420334 - MIR SINE MIR -64 144 109 296 295 93 0 chrX 117554649 117554788 -59419352 + MIR SINE MIR 110 261 -1 334 278 113 0 chrX 117555562 117555659 -59418481 + MIR3 SINE MIR 94 201 -7 184 159 145 14 chrX 117555722 117555791 -59418349 + L2 LINE L2 777 854 -2460 28 0 0 0 chrX 117557132 117557160 -59416980 + AT_rich Low_complexity Low_complexity 1 28 0 974 120 0 0 chrX 117558568 117558701 -59415439 + FLAM_C SINE Alu 1 133 0 1253 285 81 7 chrX 117558855 117559423 -59414717 + L1ME4a LINE L1 5265 5874 -247 2196 127 3 22 chrX 117559449 117559604 -59414536 + MER7A DNA MER2_type 1 158 -2880 2699 85 6 0 chrX 117559604 117559957 -59414183 - THE1A LTR MaLR 0 355 1 12031 81 13 1 chrX 117559957 117561519 -59412621 - THE1A-int LTR MaLR 0 1580 1 2575 99 3 3 chrX 117561519 117561874 -59412266 - THE1A LTR MaLR 0 355 1 2196 127 3 22 chrX 117561874 117562071 -59412069 + MER7A DNA MER2_type 155 346 0 412 320 11 22 chrX 117562557 117562735 -59411405 - MER5B DNA MER1_type 0 178 3 349 244 24 73 chrX 117563400 117563523 -59410617 + MER96 DNA MER1_type? 59 175 0 255 290 43 0 chrX 117563527 117563596 -59410544 + MIR SINE MIR 48 119 -89 787 313 28 10 chrX 117564415 117564703 -59409437 - LTR16A LTR ERVL -15 435 143 315 285 128 77 chrX 117565760 117566097 -59408043 - L1ME4a LINE L1 0 6121 5768 21 0 0 0 chrX 117566102 117566123 -59408017 + AT_rich Low_complexity Low_complexity 1 21 0 1022 327 107 8 chrX 117566452 117566920 -59407220 + L3 LINE CR1 861 1374 -203 234 150 0 0 chrX 117569044 117569084 -59405056 + (A)n Simple_repeat Simple_repeat 1 40 0 190 269 19 0 chrX 117569490 117569542 -59404598 - L2 LINE L2 0 3313 3261 1290 116 0 0 chrX 117569659 117569832 -59404308 + AluSg/x SINE Alu 102 274 -38 189 179 15 30 chrX 117570270 117570337 -59403803 + GA-rich Low_complexity Low_complexity 3 68 0 369 227 63 19 chrX 117570814 117570929 -59403211 + MIR SINE MIR 64 180 -62 440 288 144 0 chrX 117571249 117571360 -59402780 + L2 LINE L2 3146 3272 0 261 250 60 20 chrX 117572146 117572246 -59401894 - MER113 DNA MER1_type? -109 412 309 735 214 214 0 chrX 117572642 117572834 -59401306 + MIR SINE MIR 2 234 -28 342 262 59 81 chrX 117572835 117573082 -59401058 - MIR3 SINE MIR -14 248 3 906 258 30 9 chrX 117573170 117573403 -59400737 + L3b LINE CR1 1102 1339 -244 587 316 34 17 chrX 117574402 117574639 -59399501 + MIR SINE MIR 10 250 -12 619 231 118 94 chrX 117574992 117575247 -59398893 - MIR SINE MIR 0 262 2 373 279 184 19 chrX 117577397 117577555 -59396585 + MIR3 SINE MIR 17 200 -8 22 35 0 0 chrX 117579283 117579312 -59394828 + AT_rich Low_complexity Low_complexity 1 29 0 206 330 134 0 chrX 117579405 117579502 -59394638 + MIR SINE MIR 31 140 -68 2228 85 0 4 chrX 117581221 117581524 -59392616 - AluSg SINE Alu 0 302 1 292 323 34 114 chrX 117582103 117582366 -59391774 - L2 LINE L2 -62 3210 2969 428 285 73 7 chrX 117582635 117582772 -59391368 - MIR SINE MIR -60 148 3 540 211 32 24 chrX 117583220 117583343 -59390797 + L2 LINE L2 3190 3313 0 290 231 29 115 chrX 117584618 117584722 -59389418 - MIR SINE MIR -90 172 78 718 332 0 21 chrX 117585660 117585895 -59388245 + MIR SINE MIR 28 257 -5 420 82 0 0 chrX 117586232 117586293 -59387847 + (GA)n Simple_repeat Simple_repeat 2 62 0 498 167 60 0 chrX 117586342 117586426 -59387714 - AluJ SINE Alu -39 273 185 348 119 17 0 chrX 117586426 117586485 -59387655 - AluJ SINE Alu -157 145 86 190 234 13 65 chrX 117586487 117586564 -59387576 - L2 LINE L2 -15 3257 3185 599 306 70 16 chrX 117586579 117586821 -59387319 - MIR SINE MIR -6 256 2 613 286 70 16 chrX 117586922 117587349 -59386791 + LTR16C LTR ERVL 1 491 0 337 262 116 29 chrX 117587563 117587735 -59386405 - MER5A DNA MER1_type -2 187 1 504 0 0 0 chrX 117588114 117588170 -59385970 + (CA)n Simple_repeat Simple_repeat 2 57 0 298 263 21 21 chrX 117588500 117588595 -59385545 - L2 LINE L2 -216 3056 2962 725 276 94 0 chrX 117588645 117588848 -59385292 - MIR SINE MIR -39 223 2 549 167 31 0 chrX 117588855 117588951 -59385189 - MIR SINE MIR -106 156 58 526 308 29 6 chrX 117589359 117589531 -59384609 + L2 LINE L2 3092 3267 -5 548 188 86 8 chrX 117589606 117589723 -59384417 + MER63 DNA MER1_type 1 752 -84 341 161 0 0 chrX 117589723 117589779 -59384361 + MER63 DNA MER1_type 978 1033 -28 182 372 47 23 chrX 117590357 117590443 -59383697 - MIR SINE MIR -155 107 20 400 197 51 0 chrX 117591767 117591884 -59382256 - MER113 DNA MER1_type? -398 123 1 2441 71 3 0 chrX 117594760 117595054 -59379086 - AluSp SINE Alu -18 295 1 252 274 137 0 chrX 117595120 117595193 -59378947 - MIR SINE MIR -124 138 56 456 51 0 0 chrX 117595692 117595751 -59378389 + (CA)n Simple_repeat Simple_repeat 1 59 0 193 234 130 39 chrX 117595829 117595906 -59378234 + L2 LINE L2 3015 3098 -174 909 235 50 29 chrX 117595973 117596211 -59377929 + MIR SINE MIR 20 262 0 651 204 70 8 chrX 117596300 117596466 -59377674 + MER69A DNA AcHobo 1 177 0 1016 167 57 5 chrX 117596805 117596997 -59377143 - MER20 DNA MER1_type -1 218 17 21 104 0 0 chrX 117598478 117598555 -59375585 + AT_rich Low_complexity Low_complexity 1 77 0 423 237 0 0 chrX 117598923 117599037 -59375103 + CT-rich Low_complexity Low_complexity 2 115 0 377 306 0 36 chrX 117599375 117599486 -59374654 + MIR3 SINE MIR 7 113 -95 720 297 56 28 chrX 117599559 117599950 -59374190 - LTR16B LTR ERVL -12 452 51 803 150 0 0 chrX 117600107 117600240 -59373900 - L1MA3 LINE L1 0 6305 6173 225 119 0 0 chrX 117600736 117600778 -59373362 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 274 305 114 8 chrX 117601649 117601780 -59372360 + MIR3 SINE MIR 16 160 -48 414 225 0 9 chrX 117601960 117602071 -59372069 - MER113 DNA MER1_type? -409 112 3 187 79 53 0 chrX 117602388 117602426 -59371714 + A-rich Low_complexity Low_complexity 4 43 0 264 232 39 106 chrX 117602720 117602861 -59371279 - MIR SINE MIR -41 167 61 2163 105 0 48 chrX 117603075 117603388 -59370752 + AluSg SINE Alu 1 298 -12 207 0 0 0 chrX 117603508 117603531 -59370609 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 432 0 0 0 chrX 117603530 117603578 -59370562 + (CA)n Simple_repeat Simple_repeat 1 48 0 1028 213 124 10 chrX 117604493 117604784 -59369356 - MER5C DNA MER1_type 0 324 1 565 307 173 19 chrX 117604944 117605330 -59368810 - L2 LINE L2 -169 3144 2698 236 184 0 0 chrX 117605339 117605388 -59368752 + L1MB7 LINE L1 6127 6175 -9 189 0 0 0 chrX 117605401 117605422 -59368718 + (GA)n Simple_repeat Simple_repeat 2 22 0 269 294 191 29 chrX 117605453 117605589 -59368551 + L2 LINE L2 3104 3261 -11 4463 136 30 12 chrX 117607144 117607917 -59366223 + L1MA7 LINE L1 5494 6280 -11 22 0 0 0 chrX 117607920 117607942 -59366198 + AT_rich Low_complexity Low_complexity 1 22 0 446 352 56 25 chrX 117608063 117608344 -59365796 - L2 LINE L2 -420 2894 2605 204 317 134 0 chrX 117608344 117608426 -59365714 - MER5B DNA MER1_type 0 178 86 2584 74 72 91 chrX 117608506 117608981 -59365159 - MER41A LTR ERV1 -88 466 1 2797 97 5 24 chrX 117608981 117609406 -59364734 - MER41A-int LTR ERV1 -2 5944 5528 25 0 0 0 chrX 117609959 117609984 -59364156 + AT_rich Low_complexity Low_complexity 1 25 0 2292 119 0 0 chrX 117610101 117610411 -59363729 - AluSx SINE Alu -2 310 1 198 0 0 0 chrX 117610420 117610442 -59363698 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 225 105 0 0 chrX 117612022 117612060 -59362080 - HY3 scRNA scRNA -2 99 62 243 0 0 0 chrX 117613346 117613373 -59360767 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 240 109 36 18 chrX 117613408 117613463 -59360677 + L1MC4 LINE L1 6648 6703 -1339 * 8589 144 21 15 chrX 117613437 117615548 -59358592 - L1MA2 LINE L1 -10 6294 4171 10150 54 3 1 chrX 117615548 117617587 -59356553 - L1PA6 LINE L1 0 6154 4093 8589 144 21 15 chrX 117617587 117618141 -59355999 - L1MA2 LINE L1 -2133 4171 3622 2485 50 0 7 chrX 117619608 117619910 -59354230 - AluY SINE Alu -11 300 1 2179 114 3 7 chrX 117621087 117621386 -59352754 - AluSx SINE Alu -14 298 1 7514 30 2 2 chrX 117622320 117623654 -59350486 - L1PA4 LINE L1 -2 6153 4819 404 105 53 0 chrX 117625823 117625899 -59348241 - L1MA4A LINE L1 -6 6297 6218 1033 194 52 36 chrX 117676324 117676572 -59297568 + MIR SINE MIR 6 257 -5 1037 213 48 0 chrX 117676618 117676825 -59297315 - MER20 DNA MER1_type 0 219 3 222 291 18 0 chrX 117677968 117678023 -59296117 + MIR SINE MIR 46 101 -107 184 239 0 0 chrX 117678217 117678263 -59295877 + MIR SINE MIR 102 147 -115 327 188 71 62 chrX 117678265 117678377 -59295763 - L2 LINE L2 0 3313 3201 212 243 149 14 chrX 117678358 117678432 -59295708 + MIR SINE MIR 155 238 -24 * 771 334 31 25 chrX 117679940 117680266 -59293874 + L3 LINE CR1 1009 1336 -241 391 336 24 0 chrX 117680282 117680407 -59293733 - L2 LINE L2 0 3272 3145 461 286 162 54 chrX 117680487 117680728 -59293412 + L3 LINE CR1 1309 1575 -2 655 244 163 19 chrX 117681169 117681378 -59292762 - MIR SINE MIR -23 239 1 288 302 7 36 chrX 117682513 117682652 -59291488 + L1ME LINE L1 5685 5819 -302 23 33 0 0 chrX 117682677 117682707 -59291433 + AT_rich Low_complexity Low_complexity 1 30 0 285 29 0 0 chrX 117683474 117683508 -59290632 + (TG)n Simple_repeat Simple_repeat 1 34 0 1524 145 0 0 chrX 117683518 117683769 -59290371 - AluSc SINE Alu 0 310 60 773 149 0 0 chrX 117683869 117683990 -59290150 - L1M2 LINE L1 -6725 124 4 378 211 0 92 chrX 117684447 117684556 -59289584 + L1ME3A LINE L1 6063 6161 -9 283 147 279 0 chrX 117684611 117684679 -59289461 + L1ME2 LINE L1 6068 6154 -10 248 289 157 0 chrX 117684735 117684901 -59289239 + L1MC4 LINE L1 7832 8023 -19 2102 89 0 18 chrX 117685229 117685510 -59288630 + AluSx SINE Alu 3 278 -34 353 120 0 0 chrX 117685510 117685560 -59288580 + Alu SINE Alu 245 294 -6 878 129 57 0 chrX 117687207 117687403 -59286737 + AluSg/x SINE Alu 137 340 0 226 226 38 19 chrX 117688104 117688157 -59285983 - L2 LINE L2 -24 3248 3195 284 190 0 52 chrX 117691907 117691965 -59282175 - L2 LINE L2 -3 3310 3256 366 336 82 0 chrX 117692150 117692272 -59281868 - L2 LINE L2 -4 3268 3137 525 274 41 111 chrX 117693541 117693811 -59280329 - MIR SINE MIR -4 258 8 21 0 0 0 chrX 117694174 117694195 -59279945 + AT_rich Low_complexity Low_complexity 1 21 0 384 226 55 85 chrX 117695063 117695216 -59278924 + MIR SINE MIR 36 182 -58 231 367 55 9 chrX 117695416 117695525 -59278615 - L2 LINE L2 -5 3267 3154 596 351 154 44 chrX 117696377 117697182 -59276958 + L2 LINE L2 2360 3272 0 242 268 188 9 chrX 117698141 117698253 -59275887 + L2 LINE L2 3141 3272 0 330 115 0 0 chrX 117698328 117698380 -59275760 + (CTA)n Simple_repeat Simple_repeat 2 53 0 691 254 49 11 chrX 117698385 117698570 -59275570 - MIR SINE MIR -2 260 69 1953 138 24 18 chrX 117698570 117698910 -59275230 - MLT1A1 LTR MaLR 0 365 24 301 250 26 0 chrX 117700073 117700149 -59273991 + MIR SINE MIR 110 187 -75 246 200 73 0 chrX 117700267 117700322 -59273818 - MIR SINE MIR -203 59 1 661 214 55 0 chrX 117700331 117700476 -59273664 - L2 LINE L2 0 3313 3161 520 175 0 0 chrX 117700697 117700794 -59273346 + MER45A DNA AcHobo 82 178 0 1449 218 16 13 chrX 117700832 117701139 -59273001 - AluJb SINE Alu -4 308 1 338 302 27 20 chrX 117701196 117701345 -59272795 + LTR16C LTR ERVL 293 442 -49 2756 258 44 15 chrX 117701363 117702123 -59272017 - L2 LINE L2 -289 3024 2240 228 296 62 12 chrX 117703169 117703250 -59270890 - L2 LINE L2 -20 3252 3168 2275 116 0 0 chrX 117703589 117703882 -59270258 + AluSx SINE Alu 1 293 -19 594 253 137 62 chrX 117704338 117704777 -59269363 - L1ME4a LINE L1 -68 6053 5582 2189 121 0 0 chrX 117704777 117705074 -59269066 + AluSx SINE Alu 1 297 -15 199 250 39 19 chrX 117705394 117705446 -59268694 - MIR SINE MIR -208 54 2 2112 134 3 16 chrX 117705592 117705906 -59268234 - AluSx SINE Alu 0 312 3 496 106 0 11 chrX 117709891 117709920 -59264220 + L1P LINE L1 5278 5306 -857 575 106 0 0 chrX 117709920 117710005 -59264135 - L1PA15 LINE L1 -9 6156 6072 496 106 0 11 chrX 117710005 117710080 -59264060 + L1P LINE L1 5306 5378 -785 234 0 0 0 chrX 117711099 117711125 -59263015 + (A)n Simple_repeat Simple_repeat 1 26 0 3713 37 2 0 chrX 117711225 117711688 -59262452 - L1PA6 LINE L1 -318 5836 5373 390 206 0 0 chrX 117711693 117711761 -59262379 - MER5A DNA MER1_type -121 68 1 223 327 113 40 chrX 117711761 117712087 -59262053 - L2 LINE L2 -1656 1658 1309 213 258 45 11 chrX 117712114 117712203 -59261937 - L2 LINE L2 -936 2378 2287 435 164 34 185 chrX 117712229 117712375 -59261765 + L2 LINE L2 3185 3308 -5 679 238 11 2 chrX 117712485 117712663 -59261477 + MIR SINE MIR 36 257 -5 3170 175 27 32 chrX 117714776 117715611 -59258529 + L1MB7 LINE L1 5019 5840 -344 2386 87 0 3 chrX 117715611 117715911 -59258229 + AluSq SINE Alu 1 299 -14 3170 175 27 32 chrX 117715911 117716080 -59258060 + L1MB7 LINE L1 5840 6008 -176 591 158 171 0 chrX 117716148 117716294 -59257846 - MER96B DNA MER1_type? -246 171 1 636 200 38 6 chrX 117716297 117716457 -59257683 + L1MB7 LINE L1 6006 6170 -14 653 198 124 6 chrX 117717386 117717563 -59256577 + MER112 DNA MER1_type 1 198 -62 482 225 120 50 chrX 117718210 117718410 -59255730 - MIR SINE MIR -41 221 8 509 248 99 7 chrX 117719038 117719179 -59254961 + MIR SINE MIR 8 161 -101 195 171 86 0 chrX 117719166 117719201 -59254939 + L2 LINE L2 3258 3295 -18 * 22 0 0 0 chrX 117720333 117720355 -59253785 + AT_rich Low_complexity Low_complexity 1 22 0 619 178 31 80 chrX 117721763 117721926 -59252214 + MIR SINE MIR 108 262 0 463 201 30 146 chrX 117722902 117723066 -59251074 - MER5B DNA MER1_type -33 145 1 456 230 250 7 chrX 117723077 117723225 -59250915 + MER5A DNA MER1_type 1 184 -5 840 174 60 0 chrX 117723757 117723924 -59250216 - MER5B DNA MER1_type 0 178 2 21 0 0 0 chrX 117724005 117724026 -59250114 + AT_rich Low_complexity Low_complexity 1 21 0 627 167 0 50 chrX 117724054 117724174 -59249966 + FLAM_A SINE Alu 13 126 -16 584 307 0 0 chrX 117724837 117724990 -59249150 + MIR3 SINE MIR 37 189 -19 273 260 0 0 chrX 117729916 117729966 -59244174 - L2 LINE L2 -76 3196 3147 254 301 58 19 chrX 117730055 117730158 -59243982 - MIR SINE MIR -67 141 35 1124 87 19 0 chrX 117730684 117730845 -59243295 + L1PA10 LINE L1 6005 6168 0 238 0 81 0 chrX 117730944 117730981 -59243159 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 984 294 61 49 chrX 117731824 117732252 -59241888 - L2 LINE L2 -19 3294 2862 586 315 18 0 chrX 117732235 117732400 -59241740 - L2 LINE L2 -707 2607 2440 * 335 103 86 0 chrX 117732549 117732607 -59241533 - L1MB8 LINE L1 -14 6164 6102 2675 146 87 9 chrX 117732626 117733168 -59240972 - L1MB4 LINE L1 0 6180 5597 2066 99 59 0 chrX 117733176 117733449 -59240691 - AluSg SINE Alu -18 292 4 197 318 45 55 chrX 117733864 117733974 -59240166 + L3b LINE CR1 1458 1566 -17 26 64 0 0 chrX 117734201 117734248 -59239892 + AT_rich Low_complexity Low_complexity 1 47 0 362 203 0 0 chrX 117734273 117734347 -59239793 + L1MA7 LINE L1 5827 5900 -391 6293 86 28 5 chrX 117734442 117735582 -59238558 - L1PA14 LINE L1 0 6161 5008 207 0 0 0 chrX 117736469 117736492 -59237648 + (CA)n Simple_repeat Simple_repeat 2 24 0 1014 304 62 6 chrX 117736933 117737270 -59236870 + L3 LINE CR1 1185 1541 -36 320 337 44 50 chrX 117737270 117737451 -59236689 - MER5A DNA MER1_type 0 189 10 209 161 0 0 chrX 117739432 117739463 -59234677 + polypyrimidine Low_complexity Low_complexity 4 34 0 1355 111 0 0 chrX 117741745 117741916 -59232224 + AluSx SINE Alu 1 171 -141 236 53 26 0 chrX 117741922 117741960 -59232180 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1120 148 48 5 chrX 117743202 117743391 -59230749 - MER3 DNA MER1_type 0 209 13 767 293 54 5 chrX 117743512 117743734 -59230406 - MIR SINE MIR -17 245 13 367 212 233 14 chrX 117744683 117744829 -59229311 - MIR SINE MIR -4 258 81 229 364 25 42 chrX 117745057 117745175 -59228965 + MIR3 SINE MIR 4 119 -89 206 351 18 0 chrX 117745194 117745251 -59228889 + MIR SINE MIR 21 78 -184 * 1103 245 152 40 chrX 117745244 117745863 -59228277 - L2 LINE L2 0 3313 2616 1584 182 7 21 chrX 117745863 117746154 -59227986 + AluJo SINE Alu 1 287 -25 449 343 12 52 chrX 117746256 117746287 -59227853 + L3 LINE CR1 1293 1324 -253 818 207 20 0 chrX 117746287 117746437 -59227703 + L1PA16 LINE L1 6005 6157 -9 449 343 12 52 chrX 117746437 117746653 -59227487 + L3 LINE CR1 1324 1530 -47 945 209 55 51 chrX 117746657 117746911 -59227229 - MER112 DNA MER1_type -1 255 1 257 182 91 15 chrX 117750920 117750986 -59223154 - MIR SINE MIR -61 147 77 25 0 0 0 chrX 117751503 117751528 -59222612 + AT_rich Low_complexity Low_complexity 1 25 0 181 290 0 32 chrX 117755025 117755087 -59219053 - L3 LINE CR1 -1449 128 69 24 32 0 0 chrX 117756404 117756435 -59217705 + AT_rich Low_complexity Low_complexity 1 31 0 2386 86 0 19 chrX 117756440 117756755 -59217385 + AluSc SINE Alu 1 309 0 304 287 47 9 chrX 117757946 117758062 -59216078 + MIR SINE MIR 50 172 -66 272 311 192 18 chrX 117758185 117758352 -59215788 - L2 LINE L2 -62 3210 3015 647 120 0 46 chrX 117758874 117758982 -59215158 - MER20 DNA MER1_type -116 103 1 2524 193 28 12 chrX 117759206 117759715 -59214425 - Charlie1b DNA MER1_type -6 517 1 185 161 0 0 chrX 117761004 117761035 -59213105 - MIR SINE MIR -110 152 122 192 77 0 0 chrX 117765048 117765074 -59209066 + (T)n Simple_repeat Simple_repeat 1 26 0 1464 173 40 43 chrX 117765230 117765554 -59208586 - MER33 DNA MER1_type 0 324 2 2474 65 0 0 chrX 117765598 117765891 -59208249 + AluY SINE Alu 1 293 -18 212 0 36 0 chrX 117766379 117766407 -59207733 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2225 107 0 7 chrX 117766433 117766732 -59207408 - AluSx SINE Alu -15 297 1 415 282 34 8 chrX 117767312 117767429 -59206711 - MIR3 SINE MIR -85 123 4 551 253 158 0 chrX 117767766 117767912 -59206228 - MER5A DNA MER1_type 0 189 21 207 211 35 18 chrX 117767954 117768011 -59206129 + GA-rich Low_complexity Low_complexity 2 59 0 309 204 74 93 chrX 117769498 117769606 -59204534 - MIR SINE MIR -31 177 71 23 0 0 0 chrX 117770872 117770895 -59203245 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chrX 117771011 117771046 -59203094 + (CA)n Simple_repeat Simple_repeat 2 36 0 246 242 10 71 chrX 117772057 117772156 -59201984 - HsTC2 DNA Tc2 -626 1272 1180 756 322 97 35 chrX 117775927 117776082 -59198058 + L2 LINE L2 1745 1889 -1425 1194 188 47 0 chrX 117776082 117776295 -59197845 + MER58A DNA MER1_type 1 223 -1 756 322 97 35 chrX 117776295 117776716 -59197424 + L2 LINE L2 1889 2357 -957 21 0 0 0 chrX 117776810 117776831 -59197309 + AT_rich Low_complexity Low_complexity 1 21 0 1801 193 34 39 chrX 117777315 117777703 -59196437 + MLT1B LTR MaLR 1 386 -4 345 394 113 0 chrX 117777780 117778054 -59196086 + L2 LINE L2 2429 2733 -581 1402 180 61 19 chrX 117778134 117778395 -59195745 - AluJo SINE Alu -30 282 11 6348 193 29 12 chrX 117778501 117780119 -59194021 - L1PA15 LINE L1 -1 6815 5142 2265 107 3 0 chrX 117780119 117780429 -59193711 - AluY SINE Alu 0 311 1 6348 193 29 12 chrX 117780429 117780912 -59193228 - L1PA15 LINE L1 -1674 5142 4668 786 208 0 0 chrX 117780912 117781061 -59193079 - L1PA15 LINE L1 -2562 4235 4087 * 6505 253 64 29 chrX 117781058 117783016 -59191124 - L1PA15 LINE L1 -4760 2027 1 223 339 200 37 chrX 117783055 117783300 -59190840 + L2 LINE L2 2909 3193 -79 242 308 167 13 chrX 117783847 117784003 -59190137 + LTR16A LTR ERVL 25 204 -246 515 255 72 78 chrX 117784005 117784311 -59189829 + LTR16A LTR ERVL 146 449 -1 1229 319 16 8 chrX 117784622 117784986 -59189154 + HERV16 LTR ERVL 342 708 -4288 2479 309 62 40 chrX 117785033 117786444 -59187696 + HERV16 LTR ERVL 815 2333 -3321 9118 160 15 3 chrX 117786444 117787909 -59186231 + L1MA2 LINE L1 18 1500 -6065 6537 125 13 20 chrX 117787906 117789226 -59184914 + L1MA2 LINE L1 6351 7661 -62 * 220 151 38 0 chrX 117789228 117789244 -59184896 + A-rich Low_complexity Low_complexity 2 16 -40 7167 48 54 0 chrX 117789244 117790835 -59183305 + L1PA5 LINE L1 4520 6151 -3 220 151 38 0 chrX 117790835 117790871 -59183269 + A-rich Low_complexity Low_complexity 16 56 0 874 83 8 0 chrX 117790871 117790992 -59183148 + L1MA3 LINE L1 6130 6251 -54 * 943 73 73 0 chrX 117790991 117791127 -59183013 + L1MA3 LINE L1 6130 6275 -30 234 191 0 0 chrX 117791127 117791174 -59182966 + (TG)n Simple_repeat Simple_repeat 2 48 0 272 49 0 0 chrX 117791174 117791215 -59182925 + L1MA3 LINE L1 6265 6305 0 395 259 27 9 chrX 117791380 117791492 -59182648 - LTR16B LTR ERVL -350 114 1 3976 295 34 33 chrX 117791553 117794595 -59179545 + HERV16 LTR ERVL 2373 4996 0 529 322 155 13 chrX 117794595 117794989 -59179151 + LTR16A LTR ERVL 1 450 0 389 242 38 38 chrX 117795975 117796107 -59178033 - L1ME3 LINE L1 -86 6076 5945 21 0 0 0 chrX 117797076 117797097 -59177043 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 117797242 117797264 -59176876 + AT_rich Low_complexity Low_complexity 1 22 0 589 258 33 33 chrX 117797562 117797744 -59176396 - MER63A DNA MER1_type -26 184 3 210 37 0 0 chrX 117797758 117797785 -59176355 + (CA)n Simple_repeat Simple_repeat 2 28 0 2375 143 74 20 chrX 117798603 117799009 -59175131 - MSTC LTR MaLR 0 428 1 1353 209 109 29 chrX 117799314 117799585 -59174555 - MLT1I LTR MaLR 0 409 98 3373 125 6 4 chrX 117799585 117800080 -59174060 - LOR1a LTR ERV1 -1 496 1 1353 209 109 29 chrX 117800080 117800185 -59173955 - MLT1I LTR MaLR -311 98 3 304 320 36 65 chrX 117800190 117800465 -59173675 - L2 LINE L2 -576 2738 2472 278 289 52 0 chrX 117801769 117801866 -59172274 - MIR SINE MIR -7 255 154 228 337 0 0 chrX 117801969 117802052 -59172088 + LTR33 LTR ERVL 101 183 -338 1478 111 60 0 chrX 117802187 117802404 -59171736 + MER30 DNA MER1_type 1 230 0 438 246 64 35 chrX 117802430 117802601 -59171539 + LTR33A LTR ERVL 333 508 -15 403 271 4 112 chrX 117802876 117803153 -59170987 - MLT1K LTR MaLR -23 565 319 203 103 26 0 chrX 117803268 117803307 -59170833 + T-rich Low_complexity Low_complexity 2 41 0 6628 19 0 0 chrX 117803320 117804114 -59170026 - L1PA3 LINE L1 -3 6152 5359 2466 22 0 0 chrX 117804114 117804428 -59169712 + L1PA3 LINE L1 5052 5365 -781 201 115 33 115 chrX 117804720 117804781 -59169359 + L2 LINE L2 3180 3235 -78 2354 93 35 0 chrX 117804864 117805208 -59168932 - L1PA11 LINE L1 -3 6171 5816 4538 188 8 18 chrX 117805208 117806720 -59167420 - L1MB3 LINE L1 -69 6114 4613 768 128 17 17 chrX 117806749 117806866 -59167274 + FLAM_A SINE Alu 12 128 -14 1290 206 32 14 chrX 117806872 117807216 -59166924 - L1MB3 LINE L1 -1535 4611 4262 236 328 75 0 chrX 117807217 117807284 -59166856 + L2 LINE L2 3200 3271 -1 369 275 133 47 chrX 117807661 117808070 -59166070 + MLT1H LTR MaLR 48 543 -6 4670 163 56 19 chrX 117809394 117810370 -59163770 - L1MA10 LINE L1 0 6334 5320 4084 154 26 15 chrX 117810370 117811177 -59162963 - L1MA7 LINE L1 0 6291 5476 20256 143 12 3 chrX 117811177 117815618 -59158522 - L1PA11 LINE L1 -6 7606 3132 1771 205 8 22 chrX 117815627 117815998 -59158142 - L1PA11 LINE L1 -7215 366 1 3352 143 150 42 chrX 117816003 117816293 -59157847 - L1MA7 LINE L1 -743 5403 5146 333 83 0 0 chrX 117816293 117816341 -59157799 - MADE1 DNA Mariner 0 80 33 3352 143 150 42 chrX 117816341 117817016 -59157124 - L1MA7 LINE L1 -1000 5146 4339 3000 185 43 18 chrX 117816990 117817710 -59156430 - L1 LINE L1 -786 5360 4623 * 367 211 9 35 chrX 117817696 117817810 -59156330 - L1 LINE L1 -3855 3251 3141 * 2890 42 6 0 chrX 117817811 117818164 -59155976 + L1PA5 LINE L1 5794 6148 -6 1684 251 41 2 chrX 117818165 117818672 -59155468 + L1 LINE L1 2293 2819 -3327 338 148 0 0 chrX 117818687 117818748 -59155392 + FAM SINE Alu 116 176 -3 2414 248 43 22 chrX 117818755 117819736 -59154404 + L1M1 LINE L1 2709 3711 -3854 313 164 0 0 chrX 117819755 117819810 -59154330 - FAM SINE Alu -5 170 116 1368 197 4 0 chrX 117819881 117820115 -59154025 - AluJo SINE Alu -77 235 1 2651 228 53 34 chrX 117820118 117821560 -59152580 - L1 LINE L1 -4518 2589 1134 1007 173 32 96 chrX 117821561 117821873 -59152267 - L1 LINE L1 -6738 292 1 273 29 0 0 chrX 117821908 117821942 -59152198 + (TA)n Simple_repeat Simple_repeat 2 35 0 350 284 19 43 chrX 117822134 117822296 -59151844 - MLT1J1 LTR MaLR -283 163 6 306 0 0 0 chrX 117822444 117822478 -59151662 + (A)n Simple_repeat Simple_repeat 1 34 0 1145 247 106 22 chrX 117822494 117822854 -59151286 - L2 LINE L2 -685 2629 2240 475 308 59 0 chrX 117822853 117823022 -59151118 + MIR SINE MIR 76 254 -8 * 371 233 198 9 chrX 117823092 117823208 -59150932 + MER5B DNA MER1_type 7 144 -34 5195 40 2 5 chrX 117823860 117824491 -59149649 + L1PA5 LINE L1 5526 6154 0 349 319 162 42 chrX 117824803 117825279 -59148861 - L2 LINE L2 -481 2833 2301 * 1613 294 5 7 chrX 117825277 117825712 -59148428 + L2 LINE L2 2499 2932 -382 454 184 0 0 chrX 117825793 117825880 -59148260 + AluJ/FLAM SINE Alu 1 87 -225 1798 134 0 8 chrX 117826519 117826780 -59147360 + AluJb SINE Alu 15 273 -39 403 18 18 18 chrX 117826781 117826838 -59147302 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 1690 65 0 0 chrX 117826938 117827139 -59147001 + AluSg/x SINE Alu 94 294 -18 1978 128 3 43 chrX 117827165 117827469 -59146671 - AluSx SINE Alu -20 292 1 1524 183 0 51 chrX 117827506 117827639 -59146501 + AluJo SINE Alu 11 149 -163 2221 99 3 0 chrX 117827639 117827943 -59146197 + AluSq SINE Alu 1 305 0 1524 183 0 51 chrX 117827943 117828120 -59146020 + AluJo SINE Alu 149 306 -6 21 36 0 0 chrX 117828160 117828188 -59145952 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 117828275 117828310 -59145830 + AT_rich Low_complexity Low_complexity 1 35 0 1035 166 77 118 chrX 117829120 117829328 -59144812 + L1MC5 LINE L1 7019 7234 -727 2113 117 6 19 chrX 117829328 117829644 -59144496 + AluSx SINE Alu 1 312 0 1035 166 77 118 chrX 117829644 117829704 -59144436 + L1MC5 LINE L1 7234 7295 -666 1635 164 52 30 chrX 117829704 117830009 -59144131 + AluJb SINE Alu 1 312 0 1035 166 77 118 chrX 117830009 117830222 -59143918 + L1MC5 LINE L1 7295 7481 -480 2830 212 68 78 chrX 117830246 117831157 -59142983 + L1MEc LINE L1 2161 3080 -3135 1645 154 13 69 chrX 117831157 117831475 -59142665 - AluJb SINE Alu -12 300 1 2830 212 68 78 chrX 117831475 117831637 -59142503 + L1MEc LINE L1 3080 3242 -2973 2196 122 0 10 chrX 117831637 117831949 -59142191 + AluJb SINE Alu 1 309 -3 2830 212 68 78 chrX 117831949 117832435 -59141705 + L1MEc LINE L1 3242 3731 -2484 2056 102 0 70 chrX 117832435 117832581 -59141559 + AluSx SINE Alu 1 115 -197 2404 69 0 13 chrX 117832581 117832886 -59141254 + AluY SINE Alu 1 301 -10 2056 102 0 70 chrX 117832886 117833053 -59141087 + AluSx SINE Alu 115 292 -20 2830 212 68 78 chrX 117833053 117833911 -59140229 + L1MEc LINE L1 3731 4805 -1410 432 176 65 49 chrX 117833915 117834015 -59140125 + MER2 DNA MER2_type 1 110 -129 332 226 0 0 chrX 117834015 117834077 -59140063 - MER2 DNA MER2_type 0 345 284 240 159 0 45 chrX 117834109 117834153 -59139987 + MER2 DNA MER2_type 285 326 -19 3009 139 59 28 chrX 117834175 117834615 -59139525 + L1MB1 LINE L1 4808 5233 -1108 2117 127 3 0 chrX 117834615 117834907 -59139233 + AluSx SINE Alu 1 293 -19 3009 139 59 28 chrX 117834907 117835031 -59139109 + L1MB1 LINE L1 5233 5352 -989 2338 86 0 10 chrX 117835031 117835334 -59138806 + AluY SINE Alu 1 300 -11 3009 139 59 28 chrX 117835334 117835553 -59138587 + L1MB1 LINE L1 5352 5598 -743 663 186 17 0 chrX 117835553 117835671 -59138469 + FLAM_C SINE Alu 2 121 -22 491 55 0 27 chrX 117835686 117835759 -59138381 + Alu SINE Alu 235 305 -7 1510 206 34 7 chrX 117835792 117836084 -59138056 + AluJo SINE Alu 1 300 -12 1353 137 14 5 chrX 117836089 117836300 -59137840 + AluJo SINE Alu 87 299 -13 1817 162 3 23 chrX 117836302 117836610 -59137530 + AluJo SINE Alu 1 302 -10 3100 164 20 20 chrX 117836613 117837224 -59136916 + L1MB1 LINE L1 5627 6237 0 2148 138 0 0 chrX 117837303 117837608 -59136532 - AluSx SINE Alu -5 307 3 2166 99 3 16 chrX 117837647 117837950 -59136190 + AluSx SINE Alu 7 305 -7 1091 181 39 31 chrX 117837952 117838206 -59135934 + Charlie1 DNA MER1_type 1637 1892 -869 5156 57 27 9 chrX 117838206 117838878 -59135262 + L1PA8 LINE L1 5485 6168 -4 1103 239 103 68 chrX 117838920 117839037 -59135103 + L1ME3A LINE L1 5259 5370 -800 2215 106 0 10 chrX 117839037 117839339 -59134801 + AluSx SINE Alu 4 302 -10 1103 239 103 68 chrX 117839339 117839878 -59134262 + L1ME3A LINE L1 5370 5938 -232 2131 139 0 0 chrX 117840540 117840843 -59133297 + AluSx SINE Alu 1 303 -9 1586 115 0 178 chrX 117840895 117841261 -59132879 + AluJb SINE Alu 1 301 -1 1698 120 3 105 chrX 117841451 117841776 -59132364 + AluJb SINE Alu 13 304 -8 2185 117 0 3 chrX 117842063 117842354 -59131786 + AluSx SINE Alu 1 290 -22 270 265 15 0 chrX 117842474 117842542 -59131598 + A-rich Low_complexity Low_complexity 5 73 0 859 76 0 0 chrX 117842563 117842668 -59131472 + AluJb SINE Alu 196 300 -12 1732 121 21 98 chrX 117843055 117843393 -59130747 + AluJb SINE Alu 1 312 0 29 0 0 0 chrX 117843736 117843765 -59130375 + AT_rich Low_complexity Low_complexity 1 29 0 520 157 83 46 chrX 117843765 117843873 -59130267 - FLAM_A SINE Alu -25 117 6 183 261 58 14 chrX 117844074 117844143 -59129997 - L2 LINE L2 -1871 1443 1372 2271 93 10 10 chrX 117846302 117846615 -59127525 - AluSp SINE Alu 0 313 1 1958 98 0 0 chrX 117846838 117847104 -59127036 + AluY SINE Alu 39 304 -7 570 183 154 11 chrX 117847653 117847828 -59126312 - MIR SINE MIR -2 260 61 180 250 0 0 chrX 117849479 117849519 -59124621 - L2 LINE L2 -12 3301 3262 7714 45 9 11 chrX 117849631 117851133 -59123007 + SVA Other Other 1 1382 -4 189 100 0 0 chrX 117851436 117851457 -59122683 + (A)n Simple_repeat Simple_repeat 1 24 -6 3108 34 24 5 chrX 117851457 117851835 -59122305 + L1PA5 LINE L1 5770 6154 0 189 100 0 0 chrX 117851835 117851843 -59122297 + (A)n Simple_repeat Simple_repeat 23 30 0 871 137 56 112 chrX 117852388 117852509 -59121631 - MER20 DNA MER1_type -33 186 79 315 49 0 0 chrX 117852509 117852550 -59121590 + (CA)n Simple_repeat Simple_repeat 1 41 0 871 137 56 112 chrX 117852550 117852625 -59121515 - MER20 DNA MER1_type -140 79 1 243 218 0 0 chrX 117853367 117853422 -59120718 + CT-rich Low_complexity Low_complexity 2 56 0 1141 142 85 0 chrX 117853423 117853599 -59120541 - AluJo SINE Alu -117 195 5 752 286 15 98 chrX 117853612 117853804 -59120336 + L1M4 LINE L1 2226 2432 -3714 2591 47 0 0 chrX 117853804 117854102 -59120038 + AluY SINE Alu 3 300 -11 2116 125 7 0 chrX 117854102 117854404 -59119736 + AluSx SINE Alu 1 305 -7 752 286 15 98 chrX 117854404 117854738 -59119402 + L1M4 LINE L1 2430 2709 -3437 628 331 0 0 chrX 117854792 117854958 -59119182 + MER91A DNA MER1_type 29 194 -2 489 268 35 97 chrX 117854959 117855017 -59119123 + L1M4 LINE L1 2698 2758 -3388 2204 103 0 47 chrX 117855017 117855337 -59118803 + AluSx SINE Alu 1 305 -7 489 268 35 97 chrX 117855337 117855744 -59118396 + L1M4 LINE L1 2758 3115 -3031 1580 141 99 14 chrX 117855744 117856028 -59118112 - AluSx SINE Alu -4 308 1 489 268 35 97 chrX 117856028 117856198 -59117942 + L1M4 LINE L1 3115 3294 -2852 2093 238 34 4 chrX 117856198 117856703 -59117437 - LTR33 LTR ERVL 0 521 2 1254 308 87 45 chrX 117856894 117857644 -59116496 - ERVL LTR ERVL -356 5408 4628 2296 103 3 13 chrX 117857665 117857977 -59116163 + AluSx SINE Alu 1 309 -3 3219 174 34 67 chrX 117857983 117857996 -59116144 + MER72 LTR ERV1 10 22 -700 2108 109 0 7 chrX 117857996 117858281 -59115859 + AluSg SINE Alu 1 283 -27 225 0 0 0 chrX 117858281 117858306 -59115834 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 3219 174 34 67 chrX 117858306 117858978 -59115162 + MER72 LTR ERV1 21 673 -49 2245 84 18 0 chrX 117858978 117859252 -59114888 + AluSx SINE Alu 1 279 -33 3219 174 34 67 chrX 117859252 117859299 -59114841 + MER72 LTR ERV1 673 720 -2 4989 307 50 30 chrX 117859318 117860540 -59113600 - ERVL LTR ERVL -1136 4628 3432 2019 156 0 6 chrX 117860540 117860854 -59113286 + AluJo SINE Alu 1 312 0 4989 307 50 30 chrX 117860854 117860957 -59113183 - ERVL LTR ERVL -2332 3432 3333 1909 156 0 3 chrX 117860957 117861252 -59112888 + AluJb SINE Alu 1 294 -18 4989 307 50 30 chrX 117861252 117861871 -59112269 - ERVL LTR ERVL -2431 3333 2644 763 310 80 54 chrX 117861905 117862384 -59111756 - ERVL LTR ERVL -3208 2556 2091 2750 39 0 0 chrX 117862384 117862693 -59111447 + AluY SINE Alu 1 309 -2 763 310 80 54 chrX 117862693 117863263 -59110877 - ERVL LTR ERVL -3673 2091 1339 443 292 9 0 chrX 117863295 117863408 -59110732 - MER81 DNA DNA 0 114 1 2080 117 52 0 chrX 117863526 117863817 -59110323 - AluSx SINE Alu -6 306 1 1726 93 118 50 chrX 117864065 117864344 -59109796 + AluSq SINE Alu 1 298 -15 250 299 21 21 chrX 117864347 117864444 -59109696 - ERVL LTR ERVL -4537 459 363 1142 139 6 0 chrX 117864861 117865026 -59109114 - AluJb SINE Alu -18 294 129 1106 173 22 0 chrX 117865036 117865221 -59108919 - MER5A DNA MER1_type 0 189 1 2448 82 3 3 chrX 117865249 117865553 -59108587 + AluSq SINE Alu 1 304 -9 584 251 103 91 chrX 117865598 117865929 -59108211 - L2 LINE L2 -89 3224 2890 463 279 18 12 chrX 117866004 117866169 -59107971 - L1MC4a LINE L1 -1876 5932 5767 2289 98 7 0 chrX 117866184 117866479 -59107661 - AluSq SINE Alu -16 297 1 522 46 0 0 chrX 117866481 117866546 -59107594 + (TG)n Simple_repeat Simple_repeat 2 66 0 627 180 27 9 chrX 117866570 117866681 -59107459 - FLAM_C SINE Alu -27 116 4 264 237 13 40 chrX 117866691 117866767 -59107373 - L1MC4a LINE L1 -2035 5773 5700 2305 120 0 0 chrX 117866769 117867078 -59107062 + AluSx SINE Alu 1 309 -3 2672 48 0 3 chrX 117867078 117867389 -59106751 + AluY SINE Alu 1 310 -1 453 305 8 0 chrX 117867449 117867580 -59106560 - L2 LINE L2 0 3313 3182 2065 158 8 151 chrX 117867730 117867998 -59106142 + MLT1D LTR MaLR 1 306 -199 2209 122 0 0 chrX 117867998 117868293 -59105847 + AluSx SINE Alu 1 295 -17 2065 158 8 151 chrX 117868293 117868523 -59105617 + MLT1D LTR MaLR 306 567 62 2347 82 0 0 chrX 117868523 117868805 -59105335 + AluSp SINE Alu 1 282 -31 2552 60 0 3 chrX 117868806 117869105 -59105035 + AluY SINE Alu 1 298 -13 2065 158 8 151 chrX 117869105 117869122 -59105018 + MLT1D LTR MaLR 567 429 -76 301 41 0 41 chrX 117869122 117869171 -59104969 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2065 158 8 151 chrX 117869171 117869240 -59104900 + MLT1D LTR MaLR 428 505 0 294 268 84 42 chrX 117869384 117869526 -59104614 + MLT1L LTR MaLR 466 613 -2 2206 124 0 0 chrX 117869854 117870160 -59103980 + AluSx SINE Alu 1 306 -6 1187 236 70 94 chrX 117870191 117870529 -59103611 + LTR16C LTR ERVL 3 348 -143 504 0 0 0 chrX 117870529 117870585 -59103555 + (TTGTG)n Simple_repeat Simple_repeat 4 59 0 1837 72 112 16 chrX 117870585 117870736 -59103404 - AluSq SINE Alu -28 285 150 2344 81 0 23 chrX 117870736 117871044 -59103096 - AluSg SINE Alu -9 301 1 1837 72 112 16 chrX 117871044 117871142 -59102998 - AluSq SINE Alu -163 150 12 1187 236 70 94 chrX 117871142 117871302 -59102838 + LTR16C LTR ERVL 346 490 -1 370 362 16 0 chrX 117871304 117871431 -59102709 + HERV16 LTR ERVL 2 130 -4866 2330 98 7 0 chrX 117871602 117871897 -59102243 - AluSq SINE Alu -16 297 1 1742 188 3 7 chrX 117871932 117872224 -59101916 + AluJb SINE Alu 1 291 -21 1567 328 74 38 chrX 117872368 117873174 -59100966 + HERV16 LTR ERVL 728 1566 -3430 2241 144 21 18 chrX 117873174 117873563 -59100577 - MLT1B LTR MaLR 0 390 1 1567 328 74 38 chrX 117873563 117873576 -59100564 + HERV16 LTR ERVL 1566 1577 -3419 2099 138 3 0 chrX 117873612 117873910 -59100230 + AluSx SINE Alu 2 300 -12 2278 104 50 31 chrX 117874076 117874433 -59099707 + THE1B LTR MaLR 1 364 0 12160 88 3 1 chrX 117874448 117876000 -59098140 + THE1B-int LTR MaLR 26 1580 0 2149 129 50 31 chrX 117876000 117876357 -59097783 + THE1B LTR MaLR 1 364 0 704 136 144 8 chrX 117876531 117876656 -59097484 + AluSg/x SINE Alu 148 289 -23 32 43 0 0 chrX 117876826 117876872 -59097268 + AT_rich Low_complexity Low_complexity 1 46 0 328 313 31 12 chrX 117876959 117877215 -59096925 - L1M4 LINE L1 -1631 4515 4255 324 0 0 0 chrX 117877407 117877443 -59096697 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 802 161 0 0 chrX 117877446 117877564 -59096576 - FLAM_C SINE Alu -25 118 1 510 293 78 25 chrX 117877717 117877959 -59096181 - MLT1J LTR MaLR -248 263 9 759 254 49 35 chrX 117877971 117878137 -59096003 - L1M4 LINE L1 -1983 4163 4001 2112 135 24 0 chrX 117878137 117878433 -59095707 - AluSx SINE Alu -9 303 1 759 254 49 35 chrX 117878433 117878568 -59095572 - L1M4 LINE L1 -2145 4001 3854 992 149 0 42 chrX 117878568 117878736 -59095404 - FAM SINE Alu -14 161 1 759 254 49 35 chrX 117878736 117878779 -59095361 - L1M4 LINE L1 -2292 3854 3813 801 180 0 0 chrX 117878797 117878919 -59095221 - FLAM_C SINE Alu -20 123 2 310 286 18 9 chrX 117878941 117879053 -59095087 - L1M4 LINE L1 -2329 3817 3705 406 170 90 0 chrX 117879130 117879230 -59094910 + MER5C DNA MER1_type 16 124 -200 22 0 0 0 chrX 117879314 117879336 -59094804 + AT_rich Low_complexity Low_complexity 1 22 0 401 15 0 136 chrX 117879336 117879402 -59094738 - AluY SINE Alu -170 131 75 2217 105 0 10 chrX 117879404 117879699 -59094441 - AluSx SINE Alu -13 299 8 2376 74 0 16 chrX 117879714 117880025 -59094115 - AluSc SINE Alu -1 308 3 23 33 0 0 chrX 117880034 117880064 -59094076 + AT_rich Low_complexity Low_complexity 1 30 0 1961 136 27 0 chrX 117880160 117880454 -59093686 + AluSg SINE Alu 3 304 -6 722 139 26 86 chrX 117880589 117880740 -59093400 + FLAM_C SINE Alu 2 143 0 312 248 85 74 chrX 117880809 117881067 -59093073 - L1M4 LINE L1 -2685 3461 3201 315 0 0 0 chrX 117881369 117881404 -59092736 + (CCG)n Simple_repeat Simple_repeat 2 36 0 807 160 100 121 chrX 117881842 117881974 -59092166 - MER33 DNA MER1_type -2261 324 191 2196 98 0 0 chrX 117881974 117882249 -59091891 - AluSx SINE Alu -37 275 1 807 160 100 121 chrX 117882249 117882447 -59091693 - MER33 DNA MER1_type -2394 191 1 475 332 151 23 chrX 117882940 117883338 -59090802 + LTR16A LTR ERVL 1 449 -1 323 300 7 0 chrX 117883637 117883777 -59090363 - L1M4 LINE L1 -3128 3018 2878 1851 120 22 7 chrX 117883789 117884064 -59090076 - AluSx SINE Alu -7 305 27 180 0 0 0 chrX 117884064 117884084 -59090056 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1250 159 30 153 chrX 117884084 117884423 -59089717 - AluJo SINE Alu -5 297 1 21 0 0 0 chrX 117884490 117884511 -59089629 + AT_rich Low_complexity Low_complexity 1 21 0 1215 220 171 88 chrX 117884995 117885508 -59088632 - MLT1E LTR MaLR -37 556 1 2422 89 0 3 chrX 117885521 117885823 -59088317 - AluSq SINE Alu -12 301 1 1041 160 23 6 chrX 117885914 117886089 -59088051 + AluJb SINE Alu 120 297 -15 690 104 8 24 chrX 117886099 117886224 -59087916 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 2454 63 26 0 chrX 117886238 117886541 -59087599 + AluY SINE Alu 1 311 0 634 270 142 13 chrX 117886548 117886568 -59087572 - LTR33A LTR ERVL -182 341 325 387 0 0 0 chrX 117886568 117886611 -59087529 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 634 270 142 13 chrX 117886611 117886816 -59087324 - LTR33A LTR ERVL -198 325 87 518 274 91 53 chrX 117886820 117886981 -59087159 - HAL1 LINE L1 -1043 1464 1311 2543 61 0 0 chrX 117886981 117887278 -59086862 - AluSx SINE Alu -15 297 1 518 274 91 53 chrX 117887278 117887455 -59086685 - HAL1 LINE L1 -1196 1311 1113 252 222 0 0 chrX 117887633 117887687 -59086453 - MIR SINE MIR -27 235 182 31 0 0 0 chrX 117888184 117888215 -59085925 + AT_rich Low_complexity Low_complexity 1 31 0 364 121 17 0 chrX 117888217 117888275 -59085865 - U7 snRNA snRNA -2 61 3 2454 52 42 0 chrX 117888305 117888594 -59085546 + AluY SINE Alu 1 301 -10 2723 36 0 0 chrX 117888720 117889023 -59085117 + AluY SINE Alu 1 303 -8 58 0 0 0 chrX 117889037 117889095 -59085045 + AT_rich Low_complexity Low_complexity 1 58 0 2665 190 32 4 chrX 117889462 117890100 -59084040 + MER54A LTR ERVL 1 691 -210 1090 116 0 0 chrX 117890105 117890251 -59083889 - AluSq/x SINE Alu -166 146 1 230 182 91 0 chrX 117890285 117890351 -59083789 - Charlie8 DNA MER1_type 0 2417 2346 2338 84 3 7 chrX 117890464 117890762 -59083378 - AluSg SINE Alu -13 297 1 2256 112 13 0 chrX 117890874 117891178 -59082962 + AluSq SINE Alu 1 308 -5 250 183 17 17 chrX 117891466 117891526 -59082614 + L1MC2 LINE L1 6284 6343 -1 504 287 122 45 chrX 117891562 117891757 -59082383 - L1ME LINE L1 -303 5818 5639 2133 125 0 3 chrX 117891757 117892052 -59082088 + AluSg SINE Alu 1 294 -16 504 287 122 45 chrX 117892052 117892317 -59081823 - L1ME LINE L1 -482 5639 5314 308 249 97 48 chrX 117892329 117892494 -59081646 - L1ME LINE L1 -852 5294 5122 1494 162 3 44 chrX 117892506 117892829 -59081311 + AluJo SINE Alu 1 311 0 986 142 12 31 chrX 117892868 117893052 -59081088 - AluJo/FRAM SINE Alu 0 312 134 2417 79 3 9 chrX 117893052 117893367 -59080773 - AluSq SINE Alu 0 313 1 2580 78 133 3 chrX 117893434 117893819 -59080321 + LTR7 LTR ERV1 1 435 -15 392 64 0 0 chrX 117893819 117893866 -59080274 + LTR7 LTR ERV1 402 448 -2 2547 39 0 7 chrX 117894218 117894524 -59079616 - AluY SINE Alu -7 304 1 303 28 0 0 chrX 117894765 117894801 -59079339 + (TA)n Simple_repeat Simple_repeat 2 37 0 2143 35 0 19 chrX 117894801 117895059 -59079081 - AluY SINE Alu -1 310 58 2402 36 0 85 chrX 117895178 117895509 -59078631 - AluY SINE Alu -8 303 1 1305 232 163 16 chrX 117895536 117895683 -59078457 - L2 LINE L2 0 3313 3189 2185 107 0 0 chrX 117895683 117895994 -59078146 + AluSg SINE Alu 1 311 0 1305 232 163 16 chrX 117895994 117896519 -59077621 - L2 LINE L2 -124 3189 2559 297 171 0 0 chrX 117896690 117896778 -59077362 + CT-rich Low_complexity Low_complexity 1 88 0 2082 120 3 0 chrX 117897472 117897756 -59076384 + AluSq SINE Alu 1 285 -28 2156 113 0 3 chrX 117897817 117898143 -59075997 + AluSg SINE Alu 1 325 0 1078 124 286 17 chrX 117898147 117898381 -59075759 + AluSg1 SINE Alu 1 297 -12 2046 131 0 20 chrX 117898565 117898871 -59075269 + AluJb SINE Alu 1 300 -12 394 227 109 36 chrX 117898907 117899111 -59075029 + L1M4 LINE L1 3962 4185 -1961 2158 120 16 3 chrX 117899111 117899420 -59074720 + AluSq SINE Alu 1 313 0 394 227 109 36 chrX 117899420 117899435 -59074705 + L1M4 LINE L1 4185 4197 -1949 1105 191 38 17 chrX 117899499 117899787 -59074353 + L1M4 LINE L1 5023 5316 -830 2572 65 0 0 chrX 117899809 117900117 -59074023 - AluY SINE Alu -3 308 1 2289 73 3 57 chrX 117900153 117900470 -59073670 + AluSg SINE Alu 1 300 -10 436 167 0 0 chrX 117900489 117900561 -59073579 + L1M4 LINE L1 5326 5397 -783 827 155 23 0 chrX 117900563 117900692 -59073448 + FLAM_C SINE Alu 2 133 -10 2213 103 0 3 chrX 117900696 117900988 -59073152 + AluSx SINE Alu 1 291 -21 542 197 26 17 chrX 117901002 117901119 -59073021 + L1M4 LINE L1 5387 5504 -670 2221 79 3 33 chrX 117901673 117901976 -59072164 + AluSp SINE Alu 1 294 -19 24 0 0 0 chrX 117901977 117902001 -59072139 + AT_rich Low_complexity Low_complexity 1 24 0 1239 149 6 65 chrX 117902212 117902576 -59071564 + L1MB7 LINE L1 5460 5956 -251 2196 119 3 0 chrX 117902708 117903011 -59071129 - AluSq SINE Alu -9 304 1 2191 122 0 22 chrX 117903038 117903357 -59070783 + AluSx SINE Alu 1 312 0 2135 123 0 0 chrX 117903813 117904098 -59070042 + AluSx SINE Alu 1 285 -27 279 0 0 0 chrX 117904098 117904129 -59070011 + (CA)n Simple_repeat Simple_repeat 2 32 0 1173 130 0 0 chrX 117904344 117904513 -59069627 - AluSc SINE Alu -37 272 104 2184 113 3 23 chrX 117904573 117904883 -59069257 + AluSx SINE Alu 1 304 -8 535 324 107 60 chrX 117904903 117905523 -59068617 + HAL1b LINE L1 198 846 -502 786 149 0 52 chrX 117905589 117905723 -59068417 + FLAM_C SINE Alu 2 128 -5 2355 93 6 6 chrX 117905786 117906098 -59068042 + AluSq SINE Alu 1 312 -1 1141 60 5 33 chrX 117906106 117906290 -59067850 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2054 96 0 121 chrX 117906416 117906748 -59067392 - AluSx SINE Alu -10 292 1 464 249 80 58 chrX 117906867 117907177 -59066963 - L1 LINE L1 -2109 4037 3726 201 94 0 0 chrX 117907178 117907210 -59066930 + (TA)n Simple_repeat Simple_repeat 2 33 0 2320 88 0 0 chrX 117907214 117907498 -59066642 - AluSx SINE Alu -27 285 2 2491 54 3 0 chrX 117907927 117908223 -59065917 - AluY SINE Alu -14 297 1 858 167 0 0 chrX 117908289 117908415 -59065725 - FLAM_C SINE Alu -7 126 1 1625 189 28 0 chrX 117908457 117908748 -59065392 + AluJo SINE Alu 1 299 -13 3608 189 59 25 chrX 117908759 117909161 -59064979 + L1MEc LINE L1 982 1369 -5057 309 51 0 0 chrX 117909161 117909200 -59064940 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3608 189 59 25 chrX 117909200 117909705 -59064435 + L1MEc LINE L1 1369 1856 -4570 420 20 0 0 chrX 117909705 117909754 -59064386 + (TG)n Simple_repeat Simple_repeat 2 50 0 3608 189 59 25 chrX 117909754 117910101 -59064039 + L1MEc LINE L1 1856 2471 -3955 3960 133 76 11 chrX 117910101 117910742 -59063398 + L1MC1 LINE L1 5651 6333 0 971 193 10 57 chrX 117910895 117911038 -59063102 + MER5A DNA MER1_type 7 140 -49 2469 70 0 0 chrX 117911038 117911338 -59062802 + AluSc SINE Alu 1 300 -9 971 193 10 57 chrX 117911338 117911386 -59062754 + MER5A DNA MER1_type 140 189 0 1196 156 34 25 chrX 117912150 117912387 -59061753 + L1MC4a LINE L1 7149 7387 -421 406 95 16 0 chrX 117912477 117912540 -59061600 - L1MA4A LINE L1 -5 6298 6235 3507 99 30 64 chrX 117912540 117912870 -59061270 + L1MA4A LINE L1 5629 5932 -371 2422 93 0 0 chrX 117912870 117913183 -59060957 + AluSq SINE Alu 1 313 0 3507 99 30 64 chrX 117913183 117913429 -59060711 + L1MA4A LINE L1 5932 6185 -118 24 53 0 0 chrX 117913442 117913480 -59060660 + AT_rich Low_complexity Low_complexity 1 38 0 1050 217 5 5 chrX 117913541 117913758 -59060382 + AluJb SINE Alu 84 300 -12 3462 173 121 22 chrX 117913992 117914052 -59060088 + L1ME1 LINE L1 5069 5122 -1212 2656 36 0 7 chrX 117914052 117914357 -59059783 + AluY SINE Alu 1 303 -8 3462 173 121 22 chrX 117914357 117915293 -59058847 + L1ME1 LINE L1 5122 6334 0 5099 52 3 0 chrX 117915371 117915962 -59058178 - L1PA5 LINE L1 -3 6151 5559 3130 33 9 0 chrX 117915962 117916517 -59057623 + L1PA5 LINE L1 5000 5559 -595 270 236 214 0 chrX 117916515 117916604 -59057536 + L1ME3A LINE L1 6055 6162 -8 * 741 223 22 0 chrX 117916846 117916985 -59057155 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1629 137 40 0 chrX 117916982 117917230 -59056910 + Tigger3(Golem) DNA MER2_type 2771 3028 -1 245 75 25 0 chrX 117917600 117917640 -59056500 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1917 150 3 22 chrX 117919204 117919518 -59054622 + AluJb SINE Alu 1 308 -4 203 276 0 17 chrX 117919905 117919963 -59054177 + CT-rich Low_complexity Low_complexity 1 57 0 2142 112 20 0 chrX 117921058 117921363 -59052777 - AluSp SINE Alu -2 311 1 536 279 160 27 chrX 117921414 117921751 -59052389 - L1M4 LINE L1 -3628 2518 2137 2223 99 7 0 chrX 117922084 117922368 -59051772 + AluSx SINE Alu 1 286 -26 205 392 56 8 chrX 117922388 117922513 -59051627 + L2 LINE L2 2932 3062 -210 28 29 0 0 chrX 117922924 117922959 -59051181 + AT_rich Low_complexity Low_complexity 1 35 0 1993 138 6 25 chrX 117923866 117924184 -59049956 - AluJb SINE Alu 0 312 1 2116 112 0 0 chrX 117924804 117925090 -59049050 + AluSx SINE Alu 1 286 -26 1288 283 113 9 chrX 117925211 117925663 -59048477 + L2 LINE L2 57 555 -2759 2222 219 81 30 chrX 117925670 117926646 -59047494 - L1M4 LINE L1 -3318 3326 2183 813 59 20 0 chrX 117926646 117926748 -59047392 + L1PA16 LINE L1 6054 6157 -9 2222 219 81 30 chrX 117926748 117926888 -59047252 - L1M4 LINE L1 -4461 2183 2052 813 189 124 23 chrX 117926872 117927106 -59047034 - L1M4 LINE L1 -4740 1825 1164 * 2209 121 0 7 chrX 117927106 117927411 -59046729 + AluSx SINE Alu 1 303 -9 1570 259 104 47 chrX 117927411 117928074 -59046066 - L1M4 LINE L1 -5492 1050 350 230 292 34 22 chrX 117928292 117928381 -59045759 - L1M4 LINE L1 -6445 97 8 809 258 97 22 chrX 117928384 117928652 -59045488 + L2 LINE L2 573 860 -2454 338 148 16 16 chrX 117928655 117928716 -59045424 + L2 LINE L2 1235 1295 -2019 6838 102 75 31 chrX 117928723 117929334 -59044806 - Tigger3(Golem) DNA MER2_type -3 3026 2443 2311 89 0 7 chrX 117929334 117929637 -59044503 + AluSq SINE Alu 1 301 -12 6838 102 75 31 chrX 117929637 117930015 -59044125 - Tigger3(Golem) DNA MER2_type -586 2443 1980 2171 114 0 3 chrX 117930015 117930314 -59043826 - AluSx SINE Alu -14 298 1 6838 102 75 31 chrX 117930314 117930445 -59043695 - Tigger3(Golem) DNA MER2_type -1049 1980 1856 547 188 0 0 chrX 117930434 117930519 -59043621 - Tigger3(Golem) DNA MER2_type -2944 85 1 * 3636 233 108 28 chrX 117930524 117931394 -59042746 + L2 LINE L2 1324 2313 -1001 7261 95 2 18 chrX 117931394 117932379 -59041761 + LTR5 LTR ERVK 1 969 0 3636 233 108 28 chrX 117932379 117932678 -59041462 + L2 LINE L2 2313 2587 -727 198 0 0 0 chrX 117932712 117932734 -59041406 + (TC)n Simple_repeat Simple_repeat 1 22 0 608 278 54 61 chrX 117932766 117933565 -59040575 + L1MC4 LINE L1 6975 7768 -274 1785 97 12 0 chrX 117933578 117933826 -59040314 + AluSp SINE Alu 55 305 -8 21 0 0 0 chrX 117933890 117933911 -59040229 + AT_rich Low_complexity Low_complexity 1 21 0 1206 242 126 2 chrX 117934025 117934559 -59039581 + L2 LINE L2 2701 3313 0 1344 118 123 14 chrX 117934786 117934998 -59039142 - MER46A DNA MER2_type 0 236 2 2260 100 3 7 chrX 117935347 117935646 -59038494 - AluSp SINE Alu -15 298 1 2256 89 0 14 chrX 117936142 117936434 -59037706 - AluSq SINE Alu -25 288 1 221 353 94 53 chrX 117936870 117937463 -59036677 - L2 LINE L2 -2 3311 2723 683 198 66 0 chrX 117937659 117937780 -59036360 + FLAM_A SINE Alu 2 130 -3 226 281 25 124 chrX 117937987 117938108 -59036032 + L2 LINE L2 2983 3091 -181 285 216 43 86 chrX 117938635 117938751 -59035389 - MIR3 SINE MIR -95 113 3 1807 182 53 50 chrX 117939739 117940195 -59033945 + L1ME2 LINE L1 5511 5967 -199 1425 161 36 0 chrX 117940195 117940418 -59033722 + AluJb SINE Alu 1 231 -81 476 224 72 20 chrX 117940418 117940570 -59033570 + L1MA10 LINE L1 6173 6332 -2 1825 172 24 0 chrX 117941169 117941466 -59032674 - AluJo SINE Alu -8 304 1 267 225 0 0 chrX 117941728 117941799 -59032341 + (CATA)n Simple_repeat Simple_repeat 2 72 0 216 312 13 13 chrX 117941897 117941974 -59032166 - L2 LINE L2 -2 3311 3235 312 258 58 25 chrX 117941977 117942097 -59032043 + L1ME2 LINE L1 5989 6112 -52 402 175 33 17 chrX 117942032 117942152 -59031988 + L1MA9 LINE L1 6190 6311 -1 1934 163 0 0 chrX 117942676 117942977 -59031163 + AluJb SINE Alu 1 301 -11 1042 204 22 52 chrX 117943581 117943812 -59030328 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chrX 117943854 117943875 -59030265 + AT_rich Low_complexity Low_complexity 1 21 0 2322 117 0 0 chrX 117944241 117944548 -59029592 - AluSx SINE Alu -5 307 1 2027 126 0 23 chrX 117944923 117945224 -59028916 + AluSx SINE Alu 1 294 -18 385 244 300 26 chrX 117945371 117945601 -59028539 - L2 LINE L2 0 3313 3021 2235 109 23 0 chrX 117946079 117946383 -59027757 + AluSx SINE Alu 1 311 -1 899 117 23 0 chrX 117946593 117946721 -59027419 + FLAM_C SINE Alu 2 132 -1 305 316 26 68 chrX 117949792 117949909 -59024231 + L3 LINE CR1 1449 1560 -17 2473 70 0 0 chrX 117949924 117950223 -59023917 + AluSg SINE Alu 1 299 -11 2250 115 0 0 chrX 117950339 117950635 -59023505 + AluSx SINE Alu 1 296 -16 2131 111 0 0 chrX 117951965 117952245 -59021895 + AluSq SINE Alu 1 280 -33 210 179 0 0 chrX 117952260 117952316 -59021824 + G-rich Low_complexity Low_complexity 1 56 0 471 297 156 14 chrX 117952381 117952593 -59021547 + MIR SINE MIR 1 242 -20 219 186 0 0 chrX 117952609 117952652 -59021488 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2164 105 3 10 chrX 117952817 117953111 -59021029 + AluSx SINE Alu 1 292 -20 378 170 198 9 chrX 117953531 117953637 -59020503 + MER94 DNA DNA 6 131 -3 852 139 0 0 chrX 117953899 117954021 -59020119 + FLAM_C SINE Alu 1 122 -11 756 168 0 0 chrX 117954102 117954221 -59019919 + AluJb SINE Alu 1 119 -193 277 93 37 0 chrX 117954223 117954277 -59019863 + (TA)n Simple_repeat Simple_repeat 2 57 0 321 204 10 71 chrX 117954278 117954376 -59019764 - L1MC4 LINE L1 -1339 6703 6612 658 157 0 0 chrX 117954409 117954534 -59019606 + AluJb SINE Alu 183 307 0 22 35 0 0 chrX 117955253 117955282 -59018858 + AT_rich Low_complexity Low_complexity 1 29 0 1815 123 39 45 chrX 117955352 117955660 -59018480 + AluJb SINE Alu 1 306 -6 832 155 0 20 chrX 117956099 117956247 -59017893 - L1PA16 LINE L1 -21 6145 6001 2200 115 0 0 chrX 117956324 117956603 -59017537 + AluSg SINE Alu 1 279 -31 225 0 0 0 chrX 117956610 117956635 -59017505 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 213 236 0 18 chrX 117957615 117957670 -59016470 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 24 67 0 0 chrX 117957964 117958009 -59016131 + AT_rich Low_complexity Low_complexity 1 45 0 1257 50 6 0 chrX 117958117 117958277 -59015863 - L1PA5 LINE L1 0 6154 5994 24 0 0 0 chrX 117958466 117958490 -59015650 + AT_rich Low_complexity Low_complexity 1 24 0 1375 180 20 16 chrX 117959592 117959837 -59014303 + AluJo SINE Alu 1 246 -66 243 0 0 0 chrX 117959842 117959869 -59014271 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2104 130 20 0 chrX 117960493 117960793 -59013347 - AluSq SINE Alu -7 306 1 2409 52 0 7 chrX 117961056 117961347 -59012793 + AluY SINE Alu 1 289 -22 932 92 46 0 chrX 117961460 117961613 -59012527 + L1MA5 LINE L1 6102 6261 -39 1145 82 7 0 chrX 117962454 117962601 -59011539 + AluSq/x SINE Alu 1 148 -164 338 302 27 20 chrX 117962670 117962819 -59011321 + LTR16C LTR ERVL 293 442 -49 2740 259 44 15 chrX 117962837 117963597 -59010543 - L2 LINE L2 -289 3024 2240 228 296 62 12 chrX 117964643 117964724 -59009416 - L2 LINE L2 -20 3252 3168 2275 116 0 0 chrX 117965063 117965356 -59008784 + AluSx SINE Alu 1 293 -19 610 251 137 62 chrX 117965812 117966251 -59007889 - L1ME4a LINE L1 -68 6053 5582 2189 121 0 0 chrX 117966251 117966548 -59007592 + AluSx SINE Alu 1 297 -15 276 270 31 72 chrX 117966858 117967080 -59007060 - L1ME4a LINE L1 -2281 5527 5315 328 180 16 0 chrX 117967186 117967247 -59006893 - AluSp SINE Alu -138 165 104 785 168 56 22 chrX 117967266 117967472 -59006668 + L1PB4 LINE L1 5773 5974 -182 450 165 68 10 chrX 117967451 117967554 -59006586 + L1M1 LINE L1 8 116 -7449 * 2064 138 13 0 chrX 117967554 117967852 -59006288 + AluSx SINE Alu 1 302 -10 426 85 0 0 chrX 117967852 117967911 -59006229 + (GGA)n Simple_repeat Simple_repeat 2 60 0 1131 119 0 0 chrX 117967911 117968087 -59006053 + (GAA)n Simple_repeat Simple_repeat 2 177 0 642 59 0 0 chrX 117968094 117968179 -59005961 + L1M1 LINE L1 106 190 -7375 17002 52 14 8 chrX 117968198 117970398 -59003742 + HERVL-A1 LTR ERVL 3434 5646 -8 3108 63 0 0 chrX 117970398 117970795 -59003345 + MLT2A1 LTR ERVL 4 400 -44 684 191 0 0 chrX 117970812 117971133 -59003007 + (TA)n Simple_repeat Simple_repeat 1 321 0 364 87 0 17 chrX 117971133 117971204 -59002936 + MLT2A1 LTR ERVL 391 444 0 315 48 0 159 chrX 117971280 117971343 -59002797 + MADE1 DNA Mariner 1 53 -27 454 247 118 17 chrX 117971346 117971524 -59002616 + LTR33 LTR ERVL 326 521 0 2045 126 123 0 chrX 117972188 117972537 -59001603 + MSTD LTR MaLR 3 394 -2 1696 157 26 31 chrX 117972539 117972890 -59001250 - MLT1A1 LTR MaLR -16 349 1 435 256 64 44 chrX 117973233 117973436 -59000704 + LTR67 LTR ERVL 351 557 0 296 300 80 0 chrX 117973676 117973776 -59000364 - MIR SINE MIR -17 245 138 2064 119 0 20 chrX 117973858 117974185 -58999955 + AluSx SINE Alu 1 321 0 324 174 29 0 chrX 117974575 117974644 -58999496 + Charlie8 DNA MER1_type 122 192 -2225 232 214 0 18 chrX 117974683 117974739 -58999401 + Charlie8 DNA MER1_type 2362 2416 -1 619 274 27 16 chrX 117975855 117976041 -58998099 - MER5A DNA MER1_type -1 188 1 509 243 40 86 chrX 117976661 117976710 -58997430 + MER5B DNA MER1_type 34 84 -94 1131 179 5 45 chrX 117976710 117976934 -58997206 - MER20 DNA MER1_type -1 218 4 509 243 40 86 chrX 117976934 117977036 -58997104 + MER5B DNA MER1_type 84 178 0 446 214 22 0 chrX 117977049 117977138 -58997002 + MIR SINE MIR 112 202 -60 1116 241 48 3 chrX 117977204 117977520 -58996620 + MER58B DNA MER1_type 1 330 -11 1126 183 22 13 chrX 117977522 117977752 -58996388 + LTR52 LTR ERVL 187 418 -3 1253 193 25 30 chrX 117977758 117978065 -58996075 + MLT1D LTR MaLR 224 505 0 2097 209 56 0 chrX 117978065 117978549 -58995591 + Charlie1 DNA MER1_type 1460 1970 -791 3359 174 35 8 chrX 117979020 117979763 -58994377 + Charlie1 DNA MER1_type 1960 2722 -39 2027 120 31 0 chrX 117979807 117980099 -58994041 + AluSx SINE Alu 3 303 -9 382 265 23 37 chrX 117980106 117980297 -58993843 + L1ME2 LINE L1 5679 5876 -288 35 0 0 0 chrX 117980539 117980574 -58993566 + AT_rich Low_complexity Low_complexity 1 35 0 667 262 55 13 chrX 117980689 117980926 -58993214 + Charlie7 DNA MER1_type 191 437 -2175 1192 153 0 0 chrX 117980934 117981137 -58993003 + L1P LINE L1 2189 2391 -3755 2331 94 3 0 chrX 117981137 117981436 -58992704 + AluSp SINE Alu 1 300 -13 1549 199 16 8 chrX 117981436 117981811 -58992329 + L1P LINE L1 2833 3210 -2936 10809 132 4 8 chrX 117984108 117985953 -58988187 + L1P LINE L1 3211 5048 -1098 298 223 19 96 chrX 117985952 117986109 -58988031 + L1MC5 LINE L1 7161 7305 -656 * 224 222 37 0 chrX 117986111 117986165 -58987975 + GA-rich Low_complexity Low_complexity 2 57 0 1078 184 73 98 chrX 117986185 117986400 -58987740 + L1MC5 LINE L1 7367 7586 -375 11910 85 18 1 chrX 117986400 117988830 -58985310 + L1PA7 LINE L1 3706 6152 -2 1078 184 73 98 chrX 117988830 117988864 -58985276 + L1MC5 LINE L1 7586 7619 -342 2941 148 13 26 chrX 117988864 117989406 -58984734 + L1MB8 LINE L1 5643 6177 -1 1078 184 73 98 chrX 117989406 117989714 -58984426 + L1MC5 LINE L1 7619 7911 -50 307 259 36 18 chrX 117990038 117990150 -58983990 + L1M4 LINE L1 5096 5209 -937 8402 164 16 14 chrX 117990159 117993486 -58980654 + L1PBa LINE L1 294 3909 -2953 30722 109 12 60 chrX 117993486 117996524 -58977616 + L1PA8 LINE L1 5 2560 -3612 2203 92 0 0 chrX 117996524 117996807 -58977333 + AluY SINE Alu 28 310 -1 30722 109 12 60 chrX 117996807 118000255 -58973885 + L1PA8 LINE L1 2560 6172 0 2402 68 3 23 chrX 118000326 118000634 -58973506 - AluSp SINE Alu -11 302 1 23 0 0 0 chrX 118002184 118002207 -58971933 + AT_rich Low_complexity Low_complexity 1 23 0 1418 252 17 19 chrX 118002555 118002976 -58971164 - L1M4 LINE L1 -1922 4158 3739 781 262 155 26 chrX 118003719 118003851 -58970289 - L1ME LINE L1 -5049 1033 919 288 0 0 0 chrX 118003851 118003883 -58970257 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 262 155 26 chrX 118003883 118004563 -58969577 - L1ME LINE L1 -5163 919 277 2819 177 11 6 chrX 118004646 118005177 -58968963 + L1MB5 LINE L1 5633 6166 -8 337 292 143 63 chrX 118005285 118005713 -58968427 - L1ME LINE L1 -5598 472 11 5585 185 30 43 chrX 118005945 118006951 -58967189 - L1MB8 LINE L1 -8 6170 5153 1944 150 0 10 chrX 118006951 118007257 -58966883 - AluJb SINE Alu -9 303 1 5585 185 30 43 chrX 118007257 118007416 -58966724 - L1MB8 LINE L1 -1025 5153 4994 876 112 0 8 chrX 118007416 118007550 -58966590 - FLAM_C SINE Alu 0 133 1 5585 185 30 43 chrX 118007550 118008126 -58966014 - L1MB8 LINE L1 -1184 4994 4461 4745 67 3 22 chrX 118008126 118008753 -58965387 + SVA Other Other 772 1386 0 5585 185 30 43 chrX 118008753 118009151 -58964989 - L1MB8 LINE L1 -1717 4461 4060 282 261 33 22 chrX 118009253 118009345 -58964795 - MLT1I LTR MaLR -237 172 80 1124 166 0 0 chrX 118009534 118009703 -58964437 + AluSx SINE Alu 1 169 -143 38 0 0 0 chrX 118009783 118009821 -58964319 + AT_rich Low_complexity Low_complexity 1 38 0 353 170 0 0 chrX 118009821 118009874 -58964266 + AluJo/FLAM SINE Alu 73 125 -177 2158 108 0 3 chrX 118009877 118010172 -58963968 + AluSx SINE Alu 18 311 -1 310 197 0 0 chrX 118010251 118010317 -58963823 - L1PB4 LINE L1 -12 6144 6079 531 245 36 21 chrX 118010494 118010686 -58963454 + LTR37B LTR ERV1 217 411 -57 306 321 93 21 chrX 118010829 118010969 -58963171 + L2 LINE L2 3121 3270 -2 1681 153 33 7 chrX 118012255 118012530 -58961610 - AluJo SINE Alu -30 282 1 442 200 190 0 chrX 118013589 118013689 -58960451 - L2 LINE L2 -2 3311 3193 542 196 77 49 chrX 118014449 118014592 -58959548 - MIR SINE MIR -2 260 114 2910 214 107 3 chrX 118014600 118015491 -58958649 + L1MEc LINE L1 2153 3087 -3128 335 287 108 54 chrX 118015968 118016161 -58957979 - MER5B DNA MER1_type -2 176 1 256 299 0 0 chrX 118016168 118016235 -58957905 - MIR SINE MIR -15 247 181 1675 137 8 0 chrX 118017708 118017957 -58956183 + AluSx SINE Alu 56 306 -6 537 196 224 17 chrX 118019379 118019538 -58954602 + L2 LINE L2 3094 3295 -18 1245 46 0 0 chrX 118019538 118019689 -58954451 - L1PB1 LINE L1 -6 6145 5995 537 196 224 17 chrX 118019689 118019708 -58954432 + L2 LINE L2 3295 3309 -4 1175 211 14 0 chrX 118019737 118019955 -58954185 + MER58A DNA MER1_type 2 222 -2 414 206 29 24 chrX 118021647 118021817 -58952323 + GA-rich Low_complexity Low_complexity 2 172 0 2371 136 9 55 chrX 118022601 118023000 -58951140 + L1MB7 LINE L1 5746 6125 -59 2177 97 0 10 chrX 118023000 118023300 -58950840 + AluSc SINE Alu 1 297 -12 2371 136 9 55 chrX 118023300 118023340 -58950800 + L1MB7 LINE L1 6125 6165 -19 534 283 41 89 chrX 118026120 118026413 -58947727 - MER102a DNA MER1_type -2 328 50 816 167 0 0 chrX 118026431 118026563 -58947577 + FLAM_C SINE Alu 2 133 0 2175 98 0 7 chrX 118026584 118026870 -58947270 + AluSx SINE Alu 1 284 -28 252 0 0 0 chrX 118026870 118026898 -58947242 + (AAATG)n Simple_repeat Simple_repeat 3 30 0 1654 171 52 4 chrX 118027568 118027719 -58946421 - AluJo SINE Alu -30 282 111 378 0 0 0 chrX 118027719 118027761 -58946379 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1654 171 52 4 chrX 118027761 118027878 -58946262 - AluJo SINE Alu -201 111 1 659 200 0 0 chrX 118028242 118028357 -58945783 + FLAM_C SINE Alu 2 116 -17 23 33 0 0 chrX 118028358 118028388 -58945752 + AT_rich Low_complexity Low_complexity 1 30 0 2351 107 0 0 chrX 118028393 118028703 -58945437 + AluSx SINE Alu 1 310 -2 2040 108 0 67 chrX 118028716 118029032 -58945108 + AluSx SINE Alu 1 295 -17 2382 91 0 0 chrX 118030023 118030330 -58943810 + AluSg SINE Alu 1 307 -3 201 74 0 0 chrX 118030570 118030597 -58943543 + (A)n Simple_repeat Simple_repeat 1 27 0 241 301 65 0 chrX 118030776 118030869 -58943271 + MIR SINE MIR 61 159 -103 5034 157 19 15 chrX 118031886 118032977 -58941163 + L1MB5 LINE L1 5082 6173 -1 183 80 0 0 chrX 118034815 118034840 -58939300 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chrX 118035931 118035956 -58938184 + (CA)n Simple_repeat Simple_repeat 2 26 0 241 263 0 35 chrX 118037495 118037552 -58936588 - L2 LINE L2 -14 3299 3245 22 0 0 0 chrX 118037629 118037651 -58936489 + AT_rich Low_complexity Low_complexity 1 22 0 238 339 73 42 chrX 118037787 118037952 -58936188 + MIR SINE MIR 35 204 -58 250 218 36 0 chrX 118041794 118041849 -58932291 + CT-rich Low_complexity Low_complexity 2 58 0 2270 93 0 7 chrX 118042035 118042326 -58931814 + AluSx SINE Alu 1 289 -23 1431 120 5 14 chrX 118042391 118042600 -58931540 + AluSx SINE Alu 1 207 -105 818 153 0 29 chrX 118042845 118042982 -58931158 + FLAM_C SINE Alu 1 133 0 23 78 0 0 chrX 118045189 118045240 -58928900 + AT_rich Low_complexity Low_complexity 1 51 0 2154 84 0 24 chrX 118045360 118045672 -58928468 - AluY SINE Alu 0 305 1 1007 206 105 5 chrX 118045896 118046105 -58928035 - MIR SINE MIR -18 244 15 182 349 121 22 chrX 118047232 118047464 -58926676 + L2 LINE L2 2567 2821 -493 1613 139 39 8 chrX 118048753 118049012 -58925128 + AluSx SINE Alu 43 309 -3 645 212 9 0 chrX 118049064 118049177 -58924963 + MER81 DNA DNA 1 114 0 202 188 50 0 chrX 118049378 118049479 -58924661 + (TA)n Simple_repeat Simple_repeat 2 107 0 369 0 0 0 chrX 118049481 118049522 -58924618 + (CA)n Simple_repeat Simple_repeat 2 42 0 2448 97 0 0 chrX 118050605 118050915 -58923225 + AluSx SINE Alu 1 310 -2 352 281 125 19 chrX 118051307 118051467 -58922673 - 7SLRNA srpRNA srpRNA -107 213 37 287 276 52 52 chrX 118052201 118052335 -58921805 - MIR3 SINE MIR -1 207 74 1355 156 4 13 chrX 118052564 118052789 -58921351 + AluJb SINE Alu 85 307 -5 2081 126 0 3 chrX 118053666 118053978 -58920162 - AluSx SINE Alu 0 311 1 785 213 49 110 chrX 118054535 118054937 -58919203 - L1MC4 LINE L1 -1 8041 7573 732 243 101 9 chrX 118056585 118056803 -58917337 - MIR SINE MIR 0 262 25 454 316 157 58 chrX 118057116 118057461 -58916679 - L2 LINE L2 -83 3189 2811 2339 102 3 0 chrX 118057753 118058058 -58916082 + AluSx SINE Alu 1 306 -6 2007 154 0 0 chrX 118058653 118058952 -58915188 + AluSx SINE Alu 3 301 -11 423 138 0 0 chrX 118058984 118059071 -58915069 + (CA)n Simple_repeat Simple_repeat 2 88 0 1778 179 24 0 chrX 118059545 118059885 -58914255 - L1 LINE L1 -1514 4632 4285 1184 158 47 9 chrX 118059886 118060101 -58914039 + L1PA16 LINE L1 5942 6164 -2 2185 109 0 3 chrX 118060178 118060486 -58913654 + AluSx SINE Alu 1 307 0 2233 100 0 13 chrX 118062418 118062728 -58911412 + AluSg SINE Alu 1 306 -4 256 273 76 0 chrX 118062728 118062794 -58911346 - L2 LINE L2 -68 3204 3134 816 160 16 8 chrX 118062881 118063006 -58911134 + FLAM_C SINE Alu 5 130 -13 304 255 205 20 chrX 118063026 118063226 -58910914 + L1MC4a LINE L1 5929 6165 -1643 208 291 57 85 chrX 118063316 118063563 -58910577 - L2 LINE L2 -218 3054 2815 261 257 0 29 chrX 118063744 118063814 -58910326 + MIR SINE MIR 195 262 0 21 57 0 0 chrX 118064809 118064844 -58909296 + AT_rich Low_complexity Low_complexity 1 35 0 2194 84 32 0 chrX 118065954 118066239 -58907901 + AluSq SINE Alu 1 294 -19 237 33 0 0 chrX 118067716 118067746 -58906394 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2236 100 0 23 chrX 118067828 118068137 -58906003 + AluSg SINE Alu 1 302 -8 31916 108 18 56 chrX 118068289 118074691 -58899449 + L1PA7 LINE L1 12 6153 -1 2219 103 3 16 chrX 118074749 118075059 -58899081 + AluSg SINE Alu 1 306 -4 197 253 173 0 chrX 118075454 118075529 -58898611 - MIR SINE MIR -13 249 162 237 245 20 31 chrX 118075737 118075835 -58898305 - L1MC5 LINE L1 -35 7926 7830 238 270 67 0 chrX 118075860 118075949 -58898191 - L1MC4 LINE L1 -166 7876 7782 32 0 0 0 chrX 118076169 118076201 -58897939 + AT_rich Low_complexity Low_complexity 1 32 0 766 136 0 0 chrX 118076201 118076304 -58897836 + AluSc SINE Alu 190 292 -17 2303 87 0 26 chrX 118076315 118076627 -58897513 + AluSq SINE Alu 1 304 -9 180 0 0 0 chrX 118076627 118076647 -58897493 + (GA)n Simple_repeat Simple_repeat 2 21 0 1983 146 0 3 chrX 118076701 118076995 -58897145 + AluSx SINE Alu 1 293 -19 2027 151 0 0 chrX 118077002 118077293 -58896847 + AluSq SINE Alu 1 291 -22 245 83 0 0 chrX 118077299 118077335 -58896805 + L1MCa LINE L1 992 1027 -5399 549 359 42 4 chrX 118077692 118077929 -58896211 - MIR SINE MIR -14 248 3 1166 135 16 5 chrX 118079693 118079886 -58894254 - AluSx SINE Alu -117 195 1 470 233 21 180 chrX 118079895 118080001 -58894139 + LTR33 LTR ERVL 48 83 -438 2275 106 3 0 chrX 118080001 118080304 -58893836 - AluSp SINE Alu -9 304 1 470 233 21 180 chrX 118080304 118080480 -58893660 + LTR33 LTR ERVL 83 285 -236 1993 138 10 6 chrX 118080609 118080920 -58893220 + AluSx SINE Alu 1 312 0 1856 161 0 0 chrX 118081185 118081483 -58892657 + AluSx SINE Alu 1 298 -14 1040 96 0 7 chrX 118081487 118081623 -58892517 + AluSq/x SINE Alu 1 135 -178 2013 131 7 10 chrX 118081629 118081927 -58892213 + AluSx SINE Alu 6 302 -10 2368 98 3 0 chrX 118081929 118082234 -58891906 + AluSx SINE Alu 2 307 -5 1885 120 102 0 chrX 118082288 118082571 -58891569 - AluSx SINE Alu 0 312 1 337 289 6 63 chrX 118082615 118082774 -58891366 + L2 LINE L2 3162 3311 -2 213 200 104 160 chrX 118083295 118083420 -58890720 - L2 LINE L2 -10 3262 3145 2145 131 0 0 chrX 118083459 118083771 -58890369 - AluSx SINE Alu 0 312 1 606 302 44 28 chrX 118083786 118083837 -58890303 - L1MC4a LINE L1 -1577 6231 6182 2370 93 3 0 chrX 118083837 118084147 -58889993 - AluSp SINE Alu -2 311 1 606 302 44 28 chrX 118084147 118084456 -58889684 - L1MC4a LINE L1 -1626 6182 5865 1838 122 8 0 chrX 118084463 118084718 -58889422 - AluSx SINE Alu -14 298 42 246 132 113 38 chrX 118084756 118084809 -58889331 - MER96 DNA MER1_type? -4 171 115 2276 76 6 41 chrX 118085166 118085483 -58888657 - AluSp SINE Alu -7 306 1 1907 160 0 7 chrX 118085484 118085784 -58888356 - AluJb SINE Alu -12 300 3 730 75 8 28 chrX 118086018 118086259 -58887881 + AluSg SINE Alu 1 302 -7 1058 188 39 101 chrX 118086454 118086497 -58887643 - LTR37B LTR ERV1 0 468 424 2616 39 0 10 chrX 118086497 118086807 -58887333 + AluY SINE Alu 1 307 -4 1058 188 39 101 chrX 118086807 118086844 -58887296 - LTR37B LTR ERV1 -44 424 386 2167 125 0 0 chrX 118086844 118087139 -58887001 - AluSx SINE Alu -17 295 1 1058 188 39 101 chrX 118087139 118087413 -58886727 - LTR37B LTR ERV1 -82 386 135 1125 84 0 0 chrX 118087413 118087556 -58886584 + AluSq/x SINE Alu 1 143 -170 2185 112 7 0 chrX 118087629 118087932 -58886208 + AluSx SINE Alu 1 305 -7 229 57 0 0 chrX 118087932 118087967 -58886173 + Alu SINE Alu 267 301 -2 2144 136 3 0 chrX 118087967 118088262 -58885878 + AluSg SINE Alu 1 296 -14 2585 57 0 0 chrX 118088263 118088562 -58885578 + AluY SINE Alu 2 300 -11 943 135 120 40 chrX 118088563 118088763 -58885377 + L1MB7 LINE L1 5942 6157 -27 447 225 27 18 chrX 118089254 118089365 -58884775 - MER81 DNA DNA -1 113 2 1953 163 3 0 chrX 118090518 118090825 -58883315 + AluJb SINE Alu 1 308 -4 594 122 0 0 chrX 118090825 118090923 -58883217 + (GGGA)n Simple_repeat Simple_repeat 2 99 0 391 164 0 0 chrX 118090979 118091052 -58883088 + LTR30 LTR ERV1 552 624 -98 222 37 0 0 chrX 118091056 118091083 -58883057 + (A)n Simple_repeat Simple_repeat 1 27 0 2207 88 11 3 chrX 118091136 118091442 -58882698 + AluSq SINE Alu 1 308 0 4225 116 52 28 chrX 118091715 118092140 -58882000 - LTR8 LTR ERV1 0 691 243 2097 141 0 3 chrX 118092140 118092453 -58881687 - AluJb SINE Alu 0 312 1 4225 116 52 28 chrX 118092453 118092702 -58881438 - LTR8 LTR ERV1 -448 243 1 1767 154 77 25 chrX 118092898 118093223 -58880917 + LTR47A LTR ERVL 1 342 -110 418 130 26 13 chrX 118093225 118093302 -58880838 - AluSg/x SINE Alu -15 295 218 3146 92 49 37 chrX 118093302 118093393 -58880747 - LTR9B LTR ERV1 -14 630 542 2658 17 0 0 chrX 118093393 118093695 -58880445 + AluY SINE Alu 1 302 -9 3146 92 49 37 chrX 118093695 118094112 -58880028 - LTR9B LTR ERV1 -102 542 116 2099 119 0 0 chrX 118094113 118094408 -58879732 + AluSg SINE Alu 1 295 -15 523 146 37 0 chrX 118094409 118094491 -58879649 + LTR47A LTR ERVL 368 452 0 2299 88 3 0 chrX 118094776 118095084 -58879056 - AluY SINE Alu -2 309 1 1953 71 69 126 chrX 118095416 118095592 -58878548 + MER51B LTR ERV1 1 149 -228 189 0 0 0 chrX 118095592 118095613 -58878527 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1953 71 69 126 chrX 118095613 118095786 -58878354 + MER51B LTR ERV1 149 330 -47 2275 100 0 0 chrX 118095786 118096097 -58878043 - AluSx SINE Alu -1 311 1 1130 52 0 0 chrX 118096097 118096231 -58877909 - AluSq/x SINE Alu -178 134 1 2223 89 0 0 chrX 118097153 118097446 -58876694 + AluSx SINE Alu 1 293 -19 2301 94 0 0 chrX 118097828 118098137 -58876003 + AluSq SINE Alu 1 309 -4 3963 151 142 17 chrX 118098498 118099265 -58874875 + MER21B LTR ERV1 1 863 0 388 148 0 168 chrX 118099350 118099451 -58874689 + MLT1C LTR MaLR 89 172 -218 1237 115 0 0 chrX 118099452 118099634 -58874506 + AluSp SINE Alu 130 311 -2 2298 88 0 0 chrX 118099639 118099936 -58874204 + AluSg SINE Alu 7 303 -7 614 231 75 7 chrX 118099939 118100086 -58874054 + FAM SINE Alu 1 157 -18 1113 176 124 29 chrX 118100099 118100372 -58873768 + MLT1C LTR MaLR 169 467 0 1996 104 4 4 chrX 118100425 118100737 -58873403 - AluSc SINE Alu 0 314 3 1931 141 0 0 chrX 118100905 118101202 -58872938 - AluSx SINE Alu -14 298 2 2378 58 3 7 chrX 118101308 118101616 -58872524 + AluSp SINE Alu 1 307 -6 1707 161 3 0 chrX 118101628 118101920 -58872220 + AluSx SINE Alu 2 294 -18 2166 95 0 3 chrX 118101924 118102218 -58871922 + AluSp SINE Alu 4 296 -17 2241 66 13 13 chrX 118102220 118102522 -58871618 + AluY SINE Alu 1 302 -9 2175 83 3 0 chrX 118102522 118102809 -58871331 + AluSp SINE Alu 1 289 -24 1019 186 0 0 chrX 118103256 118103428 -58870712 - FAM SINE Alu -3 172 1 2137 99 7 0 chrX 118103470 118103763 -58870377 + AluSx SINE Alu 1 295 -17 2266 81 3 10 chrX 118104177 118104484 -58869656 - AluSg SINE Alu -5 305 1 2286 94 3 0 chrX 118104495 118104804 -58869336 - AluSp SINE Alu -3 310 1 2035 93 47 0 chrX 118105137 118105416 -58868724 - AluSq SINE Alu -21 292 1 565 348 130 28 chrX 118105601 118105883 -58868257 + L2 LINE L2 145 397 -2917 1979 123 17 0 chrX 118105883 118106175 -58867965 + AluSx SINE Alu 4 300 -12 565 348 130 28 chrX 118106175 118106429 -58867711 + L2 LINE L2 397 736 -2578 355 271 0 21 chrX 118106781 118106877 -58867263 - L2 LINE L2 -9 3304 3211 206 308 39 54 chrX 118106914 118107044 -58867096 + MIR SINE MIR 134 261 -1 2055 86 0 36 chrX 118107234 118107537 -58866603 - AluSq SINE Alu -21 292 1 2145 93 0 17 chrX 118108477 118108777 -58865363 + AluSx SINE Alu 1 295 -17 698 144 180 7 chrX 118108993 118109132 -58865008 + REP3 LTR ERV 139 301 -261 24 32 0 0 chrX 118109132 118109163 -58864977 + AT_rich Low_complexity Low_complexity 1 31 0 36 0 0 0 chrX 118109174 118109210 -58864930 + AT_rich Low_complexity Low_complexity 1 36 0 1034 242 18 40 chrX 118109220 118109335 -58864805 + REP3 LTR ERV 275 391 -171 1751 168 0 13 chrX 118109335 118109638 -58864502 - AluJo SINE Alu -13 299 1 1034 242 18 40 chrX 118109638 118109795 -58864345 + REP3 LTR ERV 391 541 -21 1633 75 4 22 chrX 118109795 118110022 -58864118 - AluSg/x SINE Alu -18 294 72 656 94 31 21 chrX 118110024 118110120 -58864020 - AluSp SINE Alu -143 170 74 1102 80 68 12 chrX 118110121 118110283 -58863857 - AluSc SINE Alu -138 171 1 797 181 0 0 chrX 118110386 118110519 -58863621 + FLAM_C SINE Alu 1 133 0 1821 124 0 96 chrX 118110614 118110643 -58863497 - L1MC1 LINE L1 -199 6134 6104 2146 99 10 22 chrX 118110643 118110957 -58863183 - AluSq SINE Alu -3 310 1 1821 124 0 96 chrX 118110957 118111238 -58862902 - L1MC1 LINE L1 -229 6104 5860 2114 109 3 0 chrX 118111238 118111532 -58862608 + AluSp SINE Alu 3 297 -16 1821 124 0 96 chrX 118111532 118111575 -58862565 - L1MC1 LINE L1 -473 5860 5814 1232 157 21 101 chrX 118111579 118111766 -58862374 - AluSx SINE Alu -1 311 161 369 0 0 0 chrX 118111766 118111807 -58862333 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 1232 157 21 101 chrX 118111807 118111957 -58862183 - AluSx SINE Alu -151 161 1 2402 65 0 7 chrX 118111984 118112293 -58861847 - AluY SINE Alu -4 307 1 2058 88 20 20 chrX 118112295 118112589 -58861551 - AluSq SINE Alu -15 298 5 740 123 0 0 chrX 118112598 118112704 -58861436 - AluSg/x SINE Alu -1 308 203 339 200 31 0 chrX 118112723 118112788 -58861352 - L1M4 LINE L1 -1682 4464 4398 2093 110 7 0 chrX 118112826 118113127 -58861013 - AluSc SINE Alu -6 303 1 1470 199 37 3 chrX 118113377 118113674 -58860466 - AluJb SINE Alu -5 307 1 407 74 0 0 chrX 118113721 118113775 -58860365 + Alu SINE Alu 2 55 -257 1539 87 0 5 chrX 118113876 118114082 -58860058 + AluSg/x SINE Alu 98 302 -10 487 123 0 0 chrX 118114082 118114155 -58859985 - AluS SINE Alu -235 75 3 1585 130 0 67 chrX 118114157 118114441 -58859699 - AluSx SINE Alu -43 269 5 4713 190 46 4 chrX 118114444 118114460 -58859680 - L1MC3 LINE L1 -1182 6603 6589 1535 183 0 27 chrX 118114460 118114755 -58859385 - AluJo SINE Alu -24 288 2 4713 190 46 4 chrX 118114755 118115203 -58858937 - L1MC3 LINE L1 -1196 6589 6161 2266 105 0 0 chrX 118115203 118115509 -58858631 - AluSg SINE Alu -4 306 1 4713 190 46 4 chrX 118115509 118116021 -58858119 - L1MC3 LINE L1 -1624 6161 5585 592 155 9 17 chrX 118116029 118116145 -58857995 + AluSp SINE Alu 2 116 -197 403 252 10 10 chrX 118116503 118116606 -58857534 + AluJb SINE Alu 198 300 -2 1803 138 7 7 chrX 118116769 118117060 -58857080 - AluSx SINE Alu -19 293 3 1449 98 10 0 chrX 118117367 118117570 -58856570 - AluSc SINE Alu -29 280 76 1735 110 0 0 chrX 118117671 118117908 -58856232 - AluSq SINE Alu -76 237 1 251 315 71 16 chrX 118117960 118118087 -58856053 - ERVL LTR ERVL -5071 693 560 1612 93 118 50 chrX 118118156 118118435 -58855705 + AluSq SINE Alu 1 298 -15 1071 139 6 0 chrX 118118952 118119117 -58855023 - AluJb SINE Alu -18 294 129 1107 173 22 0 chrX 118119127 118119312 -58854828 - MER5A DNA MER1_type 0 189 1 2273 82 7 3 chrX 118119340 118119643 -58854497 + AluSq SINE Alu 1 304 -9 690 245 106 94 chrX 118119688 118120019 -58854121 - L2 LINE L2 -89 3224 2890 454 279 18 12 chrX 118120094 118120259 -58853881 - L1MC4a LINE L1 -1876 5932 5767 2162 98 7 0 chrX 118120274 118120569 -58853571 - AluSq SINE Alu -16 297 1 522 46 0 0 chrX 118120571 118120636 -58853504 + (TG)n Simple_repeat Simple_repeat 2 66 0 632 180 27 9 chrX 118120660 118120771 -58853369 - FLAM_C SINE Alu -27 116 4 264 237 13 40 chrX 118120781 118120857 -58853283 - L1MC4a LINE L1 -2035 5773 5700 2176 120 0 0 chrX 118120859 118121168 -58852972 + AluSx SINE Alu 1 309 -3 2536 48 0 3 chrX 118121168 118121479 -58852661 + AluY SINE Alu 1 310 -1 501 305 8 0 chrX 118121539 118121670 -58852470 - L2 LINE L2 0 3313 3182 2066 158 8 151 chrX 118121820 118122088 -58852052 + MLT1D LTR MaLR 1 306 -199 2085 122 0 0 chrX 118122088 118122383 -58851757 + AluSx SINE Alu 1 295 -17 2066 158 8 151 chrX 118122383 118122613 -58851527 + MLT1D LTR MaLR 306 567 62 2217 82 0 0 chrX 118122613 118122895 -58851245 + AluSp SINE Alu 1 282 -31 2416 60 0 3 chrX 118122896 118123195 -58850945 + AluY SINE Alu 1 298 -13 2066 158 8 151 chrX 118123195 118123212 -58850928 + MLT1D LTR MaLR 567 429 -76 301 41 0 41 chrX 118123212 118123261 -58850879 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2066 158 8 151 chrX 118123261 118123330 -58850810 + MLT1D LTR MaLR 428 505 0 296 268 84 42 chrX 118123474 118123616 -58850524 + MLT1L LTR MaLR 466 613 -2 2088 124 0 0 chrX 118123944 118124250 -58849890 + AluSx SINE Alu 1 306 -6 1195 236 70 94 chrX 118124281 118124619 -58849521 + LTR16C LTR ERVL 3 348 -143 504 0 0 0 chrX 118124619 118124675 -58849465 + (TTGTG)n Simple_repeat Simple_repeat 4 59 0 1729 72 112 16 chrX 118124675 118124826 -58849314 - AluSq SINE Alu -28 285 150 2213 81 0 23 chrX 118124826 118125134 -58849006 - AluSg SINE Alu -9 301 1 1729 72 112 16 chrX 118125134 118125232 -58848908 - AluSq SINE Alu -163 150 12 1195 236 70 94 chrX 118125232 118125392 -58848748 + LTR16C LTR ERVL 346 490 -1 370 362 16 0 chrX 118125394 118125521 -58848619 + HERV16 LTR ERVL 2 130 -4866 2201 98 7 0 chrX 118125692 118125987 -58848153 - AluSq SINE Alu -16 297 1 1629 188 3 7 chrX 118126022 118126314 -58847826 + AluJb SINE Alu 1 291 -21 1572 328 74 38 chrX 118126458 118127264 -58846876 + HERV16 LTR ERVL 728 1566 -3430 2234 144 21 18 chrX 118127264 118127653 -58846487 - MLT1B LTR MaLR 0 390 1 1572 328 74 38 chrX 118127653 118127666 -58846474 + HERV16 LTR ERVL 1566 1577 -3419 1977 138 3 0 chrX 118127702 118128000 -58846140 + AluSx SINE Alu 2 300 -12 2288 104 50 31 chrX 118128166 118128523 -58845617 + THE1B LTR MaLR 1 364 0 12193 88 3 1 chrX 118128538 118130090 -58844050 + THE1B-int LTR MaLR 26 1580 0 2157 129 50 31 chrX 118130090 118130447 -58843693 + THE1B LTR MaLR 1 364 0 710 136 144 8 chrX 118130621 118130746 -58843394 + AluSg/x SINE Alu 148 289 -23 228 279 41 41 chrX 118130811 118130933 -58843207 + L1MC4a LINE L1 6054 6175 -1633 22 35 0 0 chrX 118130933 118130962 -58843178 + AT_rich Low_complexity Low_complexity 1 29 0 317 313 31 12 chrX 118131049 118131305 -58842835 - L1M4 LINE L1 -1631 4515 4255 324 0 0 0 chrX 118131497 118131533 -58842607 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 789 157 0 0 chrX 118131536 118131651 -58842489 - FLAM_C SINE Alu -25 118 4 514 293 78 25 chrX 118131807 118132049 -58842091 - MLT1J LTR MaLR -248 263 9 734 254 49 35 chrX 118132061 118132227 -58841913 - L1M4 LINE L1 -1983 4163 4001 1992 135 24 0 chrX 118132227 118132523 -58841617 - AluSx SINE Alu -9 303 1 734 254 49 35 chrX 118132523 118132658 -58841482 - L1M4 LINE L1 -2145 4001 3854 1001 149 0 42 chrX 118132658 118132826 -58841314 - FAM SINE Alu -14 161 1 734 254 49 35 chrX 118132826 118132869 -58841271 - L1M4 LINE L1 -2292 3854 3813 804 167 0 36 chrX 118132871 118133009 -58841131 - AluJo SINE Alu -178 134 2 299 286 18 9 chrX 118133031 118133143 -58840997 - L1M4 LINE L1 -2329 3817 3705 457 180 90 0 chrX 118133220 118133320 -58840820 + MER5C DNA MER1_type 16 124 -200 22 0 0 0 chrX 118133404 118133426 -58840714 + AT_rich Low_complexity Low_complexity 1 22 0 400 15 0 136 chrX 118133426 118133492 -58840648 - AluY SINE Alu -170 131 75 2090 105 0 10 chrX 118133494 118133789 -58840351 - AluSx SINE Alu -13 299 8 2245 74 0 16 chrX 118133804 118134115 -58840025 - AluSc SINE Alu -1 308 3 213 224 117 66 chrX 118134131 118134250 -58839890 + MER5C DNA MER1_type 118 252 -72 1849 136 27 0 chrX 118134250 118134544 -58839596 + AluSg SINE Alu 3 304 -6 213 224 117 66 chrX 118134544 118134620 -58839520 + MER5C DNA MER1_type 252 323 -1 724 139 26 86 chrX 118134679 118134830 -58839310 + FLAM_C SINE Alu 2 143 0 302 248 85 74 chrX 118134899 118135157 -58838983 - L1M4 LINE L1 -2685 3461 3201 315 0 0 0 chrX 118135459 118135494 -58838646 + (CCG)n Simple_repeat Simple_repeat 2 36 0 777 160 100 121 chrX 118135932 118136064 -58838076 - MER33 DNA MER1_type -2261 324 191 2073 98 0 0 chrX 118136064 118136339 -58837801 - AluSx SINE Alu -37 275 1 777 160 100 121 chrX 118136339 118136537 -58837603 - MER33 DNA MER1_type -2394 191 1 355 285 68 43 chrX 118136972 118137030 -58837110 - L1M4 LINE L1 -2924 3222 3167 482 332 151 23 chrX 118137030 118137428 -58836712 + LTR16A LTR ERVL 1 449 -1 355 285 68 43 chrX 118137428 118137576 -58836564 - L1M4 LINE L1 -2979 3167 3011 313 300 7 0 chrX 118137727 118137867 -58836273 - L1M4 LINE L1 -3128 3018 2878 1743 120 22 7 chrX 118137879 118138154 -58835986 - AluSx SINE Alu -7 305 27 180 0 0 0 chrX 118138154 118138174 -58835966 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1262 159 30 153 chrX 118138174 118138513 -58835627 - AluJo SINE Alu -5 297 1 21 0 0 0 chrX 118138580 118138601 -58835539 + AT_rich Low_complexity Low_complexity 1 21 0 1236 220 171 88 chrX 118139085 118139598 -58834542 - MLT1E LTR MaLR -37 556 1 2304 86 0 3 chrX 118139611 118139913 -58834227 - AluSq SINE Alu -12 301 1 956 181 21 5 chrX 118140004 118140192 -58833948 + AluJb SINE Alu 120 310 -2 663 107 8 25 chrX 118140192 118140314 -58833826 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 2326 63 26 0 chrX 118140328 118140631 -58833509 + AluY SINE Alu 1 311 0 648 274 142 13 chrX 118140638 118140658 -58833482 - LTR33A LTR ERVL -182 341 325 387 0 0 0 chrX 118140658 118140701 -58833439 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 648 274 142 13 chrX 118140701 118140906 -58833234 - LTR33A LTR ERVL -198 325 87 501 274 91 53 chrX 118140910 118141071 -58833069 - HAL1 LINE L1 -1043 1464 1311 2376 60 0 3 chrX 118141071 118141369 -58832771 - AluSx SINE Alu -15 297 1 501 274 91 53 chrX 118141369 118141546 -58832594 - HAL1 LINE L1 -1196 1311 1113 272 222 0 0 chrX 118141724 118141778 -58832362 - MIR SINE MIR -27 235 182 31 0 0 0 chrX 118142275 118142306 -58831834 + AT_rich Low_complexity Low_complexity 1 31 0 363 121 17 0 chrX 118142308 118142366 -58831774 - U7 snRNA snRNA -2 61 3 2322 52 42 0 chrX 118142396 118142685 -58831455 + AluY SINE Alu 1 301 -10 2586 36 0 0 chrX 118142811 118143114 -58831026 + AluY SINE Alu 1 303 -8 58 0 0 0 chrX 118143128 118143186 -58830954 + AT_rich Low_complexity Low_complexity 1 58 0 2664 190 32 4 chrX 118143553 118144191 -58829949 + MER54A LTR ERVL 1 691 -210 1028 116 0 0 chrX 118144196 118144342 -58829798 - AluSq/x SINE Alu -166 146 1 232 182 91 0 chrX 118144376 118144442 -58829698 - Charlie8 DNA MER1_type 0 2417 2346 2205 84 3 7 chrX 118144555 118144853 -58829287 - AluSg SINE Alu -13 297 1 2086 112 16 0 chrX 118144965 118145268 -58828872 + AluSq SINE Alu 1 308 -5 244 183 17 17 chrX 118145556 118145616 -58828524 + L1MC2 LINE L1 6284 6343 -1 431 304 136 44 chrX 118145680 118145848 -58828292 - L1MC/D LINE L1 -2021 5787 5636 2030 125 0 3 chrX 118145848 118146143 -58827997 + AluSg SINE Alu 1 294 -16 431 304 136 44 chrX 118146143 118146408 -58827732 - L1MC/D LINE L1 -2172 5636 5314 378 249 97 48 chrX 118146420 118146585 -58827555 - L1MC/D LINE L1 -852 5294 5122 1408 162 3 44 chrX 118146597 118146920 -58827220 + AluJo SINE Alu 1 311 0 935 142 12 31 chrX 118146959 118147143 -58826997 - AluJo/FRAM SINE Alu 0 312 134 2299 79 3 9 chrX 118147143 118147458 -58826682 - AluSq SINE Alu 0 313 1 2621 78 133 3 chrX 118147525 118147910 -58826230 + LTR7 LTR ERV1 1 435 -15 398 64 0 0 chrX 118147910 118147957 -58826183 + LTR7 LTR ERV1 402 448 -2 2437 39 0 7 chrX 118148309 118148615 -58825525 - AluY SINE Alu -7 304 1 267 31 0 0 chrX 118148856 118148888 -58825252 + (TA)n Simple_repeat Simple_repeat 2 33 0 2045 35 0 19 chrX 118148888 118149146 -58824994 - AluY SINE Alu -1 310 58 2289 36 0 85 chrX 118149265 118149596 -58824544 - AluY SINE Alu -8 303 1 1307 236 159 12 chrX 118149623 118149770 -58824370 - L2 LINE L2 0 3313 3189 2084 107 0 0 chrX 118149770 118150081 -58824059 + AluSg SINE Alu 1 311 0 1307 236 159 12 chrX 118150081 118150606 -58823534 - L2 LINE L2 -124 3189 2559 297 171 0 0 chrX 118150777 118150865 -58823275 + CT-rich Low_complexity Low_complexity 1 88 0 317 353 35 71 chrX 118151381 118151551 -58822589 + L1MEd LINE L1 508 671 -5448 1985 120 3 0 chrX 118151559 118151843 -58822297 + AluSq SINE Alu 1 285 -28 2051 113 0 3 chrX 118151904 118152230 -58821910 + AluSg SINE Alu 1 325 0 1010 124 286 17 chrX 118152234 118152468 -58821672 + AluSg1 SINE Alu 1 297 -12 1941 131 0 20 chrX 118152652 118152958 -58821182 + AluJb SINE Alu 1 300 -12 340 227 109 36 chrX 118152994 118153198 -58820942 + L1M4 LINE L1 3962 4185 -1961 2048 120 16 3 chrX 118153198 118153507 -58820633 + AluSq SINE Alu 1 313 0 340 227 109 36 chrX 118153507 118153522 -58820618 + L1M4 LINE L1 4185 4197 -1949 1045 203 36 66 chrX 118153586 118153893 -58820247 + L1M4 LINE L1 5023 5338 -808 1282 188 29 19 chrX 118153893 118154201 -58819939 - AluY SINE Alu 0 311 1 1045 203 36 66 chrX 118154201 118154237 -58819903 + L1M4 LINE L1 5338 5306 -840 2174 73 3 57 chrX 118154237 118154554 -58819586 + AluSg SINE Alu 1 300 -10 1045 203 36 66 chrX 118154554 118154645 -58819495 + L1M4 LINE L1 5305 5397 -749 779 155 23 0 chrX 118154647 118154776 -58819364 + FLAM_C SINE Alu 2 133 -10 2105 103 0 3 chrX 118154780 118155072 -58819068 + AluSx SINE Alu 1 291 -21 528 197 26 17 chrX 118155086 118155203 -58818937 + L1M4 LINE L1 5387 5504 -670 2113 79 3 33 chrX 118155757 118156060 -58818080 + AluSp SINE Alu 1 294 -19 24 0 0 0 chrX 118156061 118156085 -58818055 + AT_rich Low_complexity Low_complexity 1 24 0 1195 149 6 65 chrX 118156296 118156660 -58817480 + L1MB7 LINE L1 5460 5956 -251 2087 119 3 0 chrX 118156792 118157095 -58817045 - AluSq SINE Alu -9 304 1 2079 122 0 22 chrX 118157122 118157441 -58816699 + AluSx SINE Alu 1 312 0 752 328 117 60 chrX 118157785 118157897 -58816243 + HAL1b LINE L1 54 158 -1190 2084 137 0 0 chrX 118157897 118158204 -58815936 + AluSx SINE Alu 1 307 -5 752 328 117 60 chrX 118158204 118158841 -58815299 + HAL1b LINE L1 158 846 -502 737 149 0 52 chrX 118158907 118159041 -58815099 + FLAM_C SINE Alu 2 128 -5 2221 96 6 6 chrX 118159104 118159416 -58814724 + AluSq SINE Alu 1 312 -1 1141 60 5 33 chrX 118159424 118159608 -58814532 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1943 104 0 118 chrX 118159728 118160066 -58814074 - AluSx SINE Alu -4 298 1 420 249 80 58 chrX 118160185 118160495 -58813645 - L1 LINE L1 -2109 4037 3726 201 94 0 0 chrX 118160496 118160528 -58813612 + (TA)n Simple_repeat Simple_repeat 2 33 0 2213 91 0 0 chrX 118160529 118160816 -58813324 - AluSx SINE Alu -24 288 2 2386 54 3 0 chrX 118161245 118161541 -58812599 - AluY SINE Alu -14 297 1 813 167 0 0 chrX 118161607 118161733 -58812407 - FLAM_C SINE Alu -7 126 1 1532 182 28 0 chrX 118161775 118162066 -58812074 + AluJo SINE Alu 1 299 -13 824 136 0 0 chrX 118162068 118162186 -58811954 + AluSq/x SINE Alu 1 118 -195 25 51 0 0 chrX 118162196 118162235 -58811905 + AT_rich Low_complexity Low_complexity 1 39 0 2169 110 7 0 chrX 118162236 118162544 -58811596 - AluSx SINE Alu -1 311 2 321 214 0 0 chrX 118162595 118162665 -58811475 + Charlie8 DNA MER1_type 402 471 -1946 2372 126 60 8 chrX 118163224 118163621 -58810519 + MSTA LTR MaLR 1 418 -10 457 244 30 46 chrX 118163680 118163731 -58810409 - MLT1I LTR MaLR -1 408 358 1721 130 79 0 chrX 118163731 118164008 -58810132 + AluJb SINE Alu 1 299 -13 457 244 30 46 chrX 118164008 118164087 -58810053 - MLT1I LTR MaLR -51 358 280 1960 127 0 0 chrX 118164141 118164425 -58809715 + AluSx SINE Alu 1 284 -28 1981 115 4 0 chrX 118164637 118164916 -58809224 + AluSx SINE Alu 1 280 -32 243 0 0 0 chrX 118164919 118164946 -58809194 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1485 283 66 26 chrX 118164959 118165812 -58808328 - L1M4 LINE L1 -1897 4249 3315 2393 63 0 0 chrX 118165915 118166214 -58807926 + AluY SINE Alu 1 299 -12 2302 62 7 0 chrX 118166472 118166762 -58807378 + AluY SINE Alu 13 304 -7 506 150 0 0 chrX 118166776 118166856 -58807284 + AluJ/FLAM SINE Alu 6 85 -227 207 200 0 0 chrX 118166856 118166901 -58807239 + A-rich Low_complexity Low_complexity 4 48 0 223 317 95 31 chrX 118167647 118168077 -58806063 + L2 LINE L2 1931 3252 -20 421 225 27 18 chrX 118168610 118168721 -58805419 + MER81 DNA DNA 2 113 -1 1380 150 0 80 chrX 118168889 118169202 -58804938 - AluJo SINE Alu 0 312 25 2063 124 0 0 chrX 118169894 118170192 -58803948 - AluSx SINE Alu -14 298 1 2162 76 4 0 chrX 118170502 118170779 -58803361 + AluSx SINE Alu 27 304 -8 811 195 44 0 chrX 118170779 118170938 -58803202 + AluJb SINE Alu 134 299 -13 1053 108 17 0 chrX 118170950 118170994 -58803146 + (GGGA)n Simple_repeat Simple_repeat 1 223 0 1053 108 17 0 chrX 118170994 118171170 -58802970 + (GGGA)n Simple_repeat Simple_repeat 2 180 0 661 214 107 6 chrX 118171320 118171479 -58802661 - MIR SINE MIR -76 186 12 564 119 12 0 chrX 118171768 118171852 -58802288 + AluJ/FRAM SINE Alu 218 302 -10 21 0 0 0 chrX 118171924 118171945 -58802195 + AT_rich Low_complexity Low_complexity 1 21 0 1851 106 30 47 chrX 118171945 118172246 -58801894 + AluSg SINE Alu 1 296 -14 2453 52 3 0 chrX 118172248 118172555 -58801585 + AluY SINE Alu 1 308 -3 1169 102 0 32 chrX 118172555 118172741 -58801399 + AluSq SINE Alu 134 313 0 2033 123 0 0 chrX 118173390 118173683 -58800457 + AluSx SINE Alu 1 293 -19 1927 133 17 0 chrX 118173792 118174094 -58800046 + AluSx SINE Alu 5 311 -1 876 139 0 0 chrX 118174163 118174300 -58799840 - AluSg/x SINE Alu -18 292 156 398 180 0 0 chrX 118174504 118174565 -58799575 - AluS SINE Alu -238 62 2 1287 210 28 7 chrX 118174568 118174859 -58799281 - AluJo SINE Alu -15 297 1 768 175 0 0 chrX 118174901 118175027 -58799113 + FLAM_C SINE Alu 1 126 -7 2274 52 7 3 chrX 118175093 118175383 -58798757 + AluY SINE Alu 1 291 -20 2251 88 3 0 chrX 118175591 118175897 -58798243 + AluSp SINE Alu 1 307 -6 2080 67 0 28 chrX 118175903 118176218 -58797922 + AluY SINE Alu 5 311 0 1803 186 70 104 chrX 118176219 118176606 -58797534 + LTR8A LTR ERV1 187 552 -175 590 138 276 0 chrX 118176606 118176771 -58797369 + FRAM SINE Alu 1 61 0 1803 186 70 104 chrX 118176771 118176942 -58797198 + LTR8A LTR ERV1 552 727 0 3507 106 13 63 chrX 118176942 118177279 -58796861 + L1MA4A LINE L1 5499 5851 -452 2098 107 0 7 chrX 118177279 118177579 -58796561 + AluSx SINE Alu 1 298 -14 3507 106 13 63 chrX 118177579 118177713 -58796427 + L1MA4A LINE L1 5851 5990 -313 1979 125 7 0 chrX 118177713 118178010 -58796130 + AluSq SINE Alu 1 299 -14 2443 60 0 0 chrX 118178010 118178312 -58795828 + AluY SINE Alu 1 302 -9 3507 106 13 63 chrX 118178312 118178440 -58795700 + L1MA4A LINE L1 5988 6070 -233 2065 125 0 3 chrX 118178441 118178754 -58795386 + AluSx SINE Alu 1 312 0 636 124 19 9 chrX 118178768 118178873 -58795267 + MER4A LTR ERV1 2 107 -557 2097 124 51 93 chrX 118178876 118179016 -58795124 + MER4A LTR ERV1 272 416 -248 2129 102 3 10 chrX 118179016 118179320 -58794820 + AluSc SINE Alu 1 302 -7 2097 124 51 93 chrX 118179320 118179589 -58794551 + MER4A LTR ERV1 416 664 0 1924 165 151 35 chrX 118179602 118180093 -58794047 + LTR10A LTR ERV1 1 548 -61 1351 96 20 0 chrX 118180118 118180317 -58793823 + L1MA4 LINE L1 6082 6284 -16 1584 135 23 8 chrX 118180317 118180583 -58793557 - AluJb SINE Alu -20 292 23 404 283 84 18 chrX 118180869 118181035 -58793105 + L2 LINE L2 2567 2743 -571 240 341 48 24 chrX 118181059 118181185 -58792955 + MER5B DNA MER1_type 2 130 -48 234 116 0 0 chrX 118181193 118181236 -58792904 + (TTCTCC)n Simple_repeat Simple_repeat 1 43 0 1776 172 0 0 chrX 118181236 118181539 -58792601 - AluJb SINE Alu -9 303 1 1156 174 5 0 chrX 118181539 118181729 -58792411 - MER31A LTR ERV1 -43 442 252 1179 178 20 103 chrX 118181790 118181869 -58792271 - MER31B LTR ERV1 -198 268 184 807 153 15 0 chrX 118181869 118182000 -58792140 + AluJo/FLAM SINE Alu 1 133 -169 2243 94 3 10 chrX 118182003 118182285 -58791855 + AluSq SINE Alu 1 282 -31 390 21 0 0 chrX 118182285 118182332 -58791808 + (CA)n Simple_repeat Simple_repeat 2 48 0 2243 94 3 10 chrX 118182332 118182356 -58791784 + AluSq SINE Alu 282 305 -8 1179 178 20 103 chrX 118182356 118182564 -58791576 - MER31B LTR ERV1 -284 182 1 200 354 71 0 chrX 118182662 118182761 -58791379 + L2 LINE L2 2905 3010 -262 253 269 0 0 chrX 118182840 118182892 -58791248 - L2 LINE L2 -554 2760 2709 334 288 0 93 chrX 118182934 118182961 -58791179 + MIR SINE MIR 137 165 -97 2029 126 3 3 chrX 118182961 118183263 -58790877 + AluSx SINE Alu 1 302 -10 334 288 0 93 chrX 118183263 118183374 -58790766 + MIR SINE MIR 165 262 0 2304 63 0 0 chrX 118183418 118183705 -58790435 - AluY SINE Alu -24 287 1 2377 18 49 0 chrX 118184505 118184789 -58789351 - AluY SINE Alu -13 298 1 2113 85 30 3 chrX 118184789 118185084 -58789056 - AluSq SINE Alu -10 303 1 326 263 0 0 chrX 118185356 118185436 -58788704 - MER116 DNA Mariner 0 80 1 182 270 0 0 chrX 118185636 118185673 -58788467 - L2 LINE L2 -4 3268 3232 1297 219 36 89 chrX 118185686 118185886 -58788254 - L2 LINE L2 0 3313 3145 2370 71 7 3 chrX 118185886 118186195 -58787945 + AluSp SINE Alu 2 311 -2 1297 219 36 89 chrX 118186195 118186409 -58787731 - L2 LINE L2 -168 3145 2921 1763 197 120 93 chrX 118186474 118186751 -58787389 - MLT1F LTR MaLR 0 542 243 712 109 0 0 chrX 118186751 118186852 -58787288 - HY3 scRNA scRNA 0 101 1 1763 197 120 93 chrX 118186852 118187092 -58787048 - MLT1F LTR MaLR -299 243 11 1374 206 99 9 chrX 118187098 118187443 -58786697 - L2 LINE L2 -511 2803 2428 470 31 265 31 chrX 118187575 118187673 -58786467 + L1MB3 LINE L1 6047 6167 -16 48 0 0 0 chrX 118187673 118187721 -58786419 + AT_rich Low_complexity Low_complexity 1 48 0 2416 58 0 3 chrX 118187721 118188030 -58786110 - AluY SINE Alu -3 308 1 2144 110 0 0 chrX 118188032 118188340 -58785800 - AluSx SINE Alu -4 308 1 274 93 0 0 chrX 118188340 118188383 -58785757 + L1MB4 LINE L1 6136 6178 -2 243 0 0 0 chrX 118188498 118188534 -58785606 - Alu SINE Alu 0 301 266 466 270 103 59 chrX 118189049 118189253 -58784887 + MIR SINE MIR 34 246 -16 277 313 0 0 chrX 118190005 118190072 -58784068 + C-rich Low_complexity Low_complexity 4 70 0 473 333 136 6 chrX 118190798 118190975 -58783165 - MIR3 SINE MIR -2 206 7 207 293 0 13 chrX 118191382 118191457 -58782683 + (TA)n Simple_repeat Simple_repeat 2 75 0 382 113 0 48 chrX 118191683 118191745 -58782395 + U6 snRNA snRNA 1 59 -48 1994 99 32 0 chrX 118191773 118192057 -58782083 - AluSx SINE Alu -19 293 1 1340 90 0 0 chrX 118192063 118192229 -58781911 - AluSq SINE Alu -16 297 132 1913 138 21 0 chrX 118192269 118192558 -58781582 + AluSq SINE Alu 3 297 -16 1417 131 0 9 chrX 118192579 118192800 -58781340 + AluJb SINE Alu 86 304 -8 2101 131 0 0 chrX 118192857 118193154 -58780986 + AluSx SINE Alu 1 297 -15 1949 85 74 21 chrX 118193200 118193483 -58780657 - AluSp SINE Alu -15 298 1 246 340 93 0 chrX 118193483 118193580 -58780560 - MIR SINE MIR -56 152 47 233 228 0 0 chrX 118193706 118193763 -58780377 + T-rich Low_complexity Low_complexity 1 57 0 24 85 0 0 chrX 118193824 118193883 -58780257 + AT_rich Low_complexity Low_complexity 1 59 0 225 336 10 48 chrX 118194038 118194142 -58779998 - L2 LINE L2 -5 3267 3168 1505 79 0 120 chrX 118194144 118194324 -58779816 - AluY SINE Alu -4 307 168 414 0 0 0 chrX 118194324 118194370 -58779770 + (TG)n Simple_repeat Simple_repeat 2 47 0 1505 79 0 120 chrX 118194370 118194456 -58779684 - AluY SINE Alu -143 168 73 450 0 0 0 chrX 118194456 118194506 -58779634 + (TG)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chrX 118194529 118194549 -58779591 + (TG)n Simple_repeat Simple_repeat 2 21 0 872 132 0 0 chrX 118194549 118194670 -58779470 - AluY SINE Alu -190 121 1 183 129 0 0 chrX 118194673 118194704 -58779436 + (T)n Simple_repeat Simple_repeat 1 31 0 2182 52 45 34 chrX 118195134 118195425 -58778715 + AluY SINE Alu 1 294 -17 2005 134 7 7 chrX 118195439 118195610 -58778530 - AluSx SINE Alu -7 305 132 2267 95 0 28 chrX 118195610 118195927 -58778213 - AluSg SINE Alu -2 308 1 2005 134 7 7 chrX 118195927 118196060 -58778080 - AluSx SINE Alu -179 133 1 373 77 77 34 chrX 118196086 118196203 -58777937 + (TA)n Simple_repeat Simple_repeat 2 123 0 386 111 64 41 chrX 118196206 118196377 -58777763 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 1514 144 63 4 chrX 118196381 118196652 -58777488 - AluSx SINE Alu -25 287 1 2208 70 42 7 chrX 118196759 118197046 -58777094 - AluY SINE Alu -13 298 2 2127 126 3 7 chrX 118197050 118197360 -58776780 - AluSg SINE Alu -1 309 1 2309 99 0 7 chrX 118197360 118197664 -58776476 - AluSq SINE Alu -11 302 1 1336 149 178 4 chrX 118197742 118198014 -58776126 + AluJb SINE Alu 1 314 0 1866 162 0 7 chrX 118198136 118198432 -58775708 + AluJb SINE Alu 1 294 -18 1876 136 22 51 chrX 118198921 118199237 -58774903 + AluSx SINE Alu 1 307 -5 2260 90 0 13 chrX 118199651 118199950 -58774190 - AluSx SINE Alu -17 295 1 1169 189 5 14 chrX 118200274 118200491 -58773649 + AluJb SINE Alu 83 297 -15 527 155 0 0 chrX 118200547 118200618 -58773522 + FLAM_A SINE Alu 46 116 -26 2014 113 7 11 chrX 118200646 118200929 -58773211 - AluSx SINE Alu -30 282 1 260 316 21 53 chrX 118201100 118201195 -58772945 + MIR SINE MIR 32 123 -139 703 179 37 8 chrX 118201195 118201329 -58772811 - FLAM_A SINE Alu 0 142 5 2277 89 0 0 chrX 118201509 118201789 -58772351 + AluSc SINE Alu 1 280 -29 2170 116 3 3 chrX 118202094 118202387 -58771753 + AluSx SINE Alu 1 293 -19 201 69 0 0 chrX 118202546 118202560 -58771580 + (TC)n Simple_repeat Simple_repeat 2 15 -15 1615 177 3 33 chrX 118202560 118202716 -58771424 - AluJb SINE Alu -22 290 146 2425 66 3 10 chrX 118202716 118203020 -58771120 - AluSp SINE Alu -11 302 1 1615 177 3 33 chrX 118203020 118203162 -58770978 - AluJb SINE Alu -166 146 1 201 69 0 0 chrX 118203162 118203176 -58770964 + (TC)n Simple_repeat Simple_repeat 14 30 0 1081 90 0 0 chrX 118203195 118203328 -58770812 + AluSq/x SINE Alu 2 134 -179 2043 113 0 35 chrX 118203329 118203639 -58770501 + AluSx SINE Alu 1 299 -13 545 114 0 0 chrX 118204147 118204217 -58769923 + U6 snRNA snRNA 1 70 -37 2013 120 3 57 chrX 118204383 118204700 -58769440 - AluSx SINE Alu -12 300 1 2313 90 10 3 chrX 118204709 118205009 -58769131 - AluSq SINE Alu -11 302 1 532 291 72 39 chrX 118205030 118205336 -58768804 - L1ME LINE L1 -459 5662 5347 2373 91 0 0 chrX 118205378 118205674 -58768466 - AluSx SINE Alu -16 296 1 534 215 0 0 chrX 118205706 118205799 -58768341 - AluJo/FRAM SINE Alu -16 296 204 682 149 0 0 chrX 118205799 118205893 -58768247 - AluJ/FLAM SINE Alu -210 102 9 279 163 0 0 chrX 118206069 118206112 -58768028 + L1MC/D LINE L1 5689 5731 -2077 1613 182 4 7 chrX 118206117 118206418 -58767722 + AluJo SINE Alu 8 307 0 2286 111 0 3 chrX 118206757 118207055 -58767085 - AluSx SINE Alu -15 297 1 2458 47 20 3 chrX 118207380 118207678 -58766462 + AluY SINE Alu 1 303 -8 1367 140 36 0 chrX 118207919 118208140 -58766000 - L1MB7 LINE L1 -11 6173 5945 2387 77 10 0 chrX 118209004 118209303 -58764837 - AluY SINE Alu -9 302 1 2410 68 0 0 chrX 118209521 118209813 -58764327 + AluY SINE Alu 1 292 -19 2324 98 6 22 chrX 118209819 118210137 -58764003 + AluSp SINE Alu 1 313 0 2244 116 0 0 chrX 118210143 118210445 -58763695 + AluSq SINE Alu 1 302 -11 2203 114 7 3 chrX 118211445 118211743 -58762397 - AluSx SINE Alu -13 299 1 1053 310 96 79 chrX 118211870 118212470 -58761670 - L3 LINE CR1 -102 1475 887 2121 86 13 51 chrX 118212470 118212783 -58761357 - AluSx SINE Alu -11 301 1 2157 111 0 3 chrX 118212783 118213072 -58761068 - AluSx SINE Alu -24 288 1 1053 310 96 79 chrX 118213072 118213144 -58760996 - L3 LINE CR1 -689 888 790 2472 87 3 0 chrX 118213172 118213484 -58760656 - AluSp SINE Alu 0 313 1 428 18 18 0 chrX 118213493 118213550 -58760590 - HY1 scRNA scRNA -1 111 54 2271 88 7 3 chrX 118213890 118214186 -58759954 + AluSp SINE Alu 1 297 -16 667 213 0 0 chrX 118214317 118214439 -58759701 - MER94 DNA DNA 0 134 13 216 229 133 24 chrX 118216525 118216608 -58757532 - MIR SINE MIR 0 262 171 2250 97 7 0 chrX 118216608 118216906 -58757234 - AluSp SINE Alu -13 300 1 1071 47 31 0 chrX 118216906 118217035 -58757105 - AluSg1 SINE Alu -176 133 1 2403 82 0 0 chrX 118217390 118217682 -58756458 + AluSq SINE Alu 1 292 -21 324 48 0 0 chrX 118217689 118217731 -58756409 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 2153 128 0 3 chrX 118217741 118218038 -58756102 + AluSx SINE Alu 2 297 -15 2076 87 7 55 chrX 118218614 118218780 -58755360 - AluSq SINE Alu -19 294 148 2262 62 0 4 chrX 118218780 118219052 -58755088 - AluSc SINE Alu -12 297 27 2076 87 7 55 chrX 118219052 118219194 -58754946 - AluSq SINE Alu -165 148 1 2188 120 0 3 chrX 118219208 118219507 -58754633 - AluSq SINE Alu -15 298 1 2883 10 0 0 chrX 118219693 118220004 -58754136 - AluY SINE Alu 0 311 1 1888 131 0 51 chrX 118220034 118220346 -58753794 + AluJo SINE Alu 5 300 -12 2333 102 3 0 chrX 118220348 118220652 -58753488 + AluSx SINE Alu 1 305 -7 22 99 0 0 chrX 118221014 118221085 -58753055 + AT_rich Low_complexity Low_complexity 1 71 0 1778 153 10 26 chrX 118221225 118221533 -58752607 + AluJo SINE Alu 1 303 -9 2270 91 0 3 chrX 118221773 118222087 -58752053 + AluSq SINE Alu 2 314 0 451 241 161 19 chrX 118222126 118222288 -58751852 + MIR3 SINE MIR 17 201 -7 2251 85 0 4 chrX 118222502 118222808 -58751332 - AluSg SINE Alu 0 305 1 2223 93 0 32 chrX 118222926 118223236 -58750904 + AluSc SINE Alu 1 300 -9 1906 127 74 0 chrX 118223270 118223554 -58750586 + AluSg SINE Alu 1 305 -5 439 213 62 24 chrX 118223914 118224040 -58750100 - MIR SINE MIR -62 146 34 2164 123 3 3 chrX 118224175 118224483 -58749657 + AluSq SINE Alu 1 308 -5 938 191 0 0 chrX 118224483 118224685 -58749455 + AluSg/x SINE Alu 134 335 0 3883 135 46 128 chrX 118224746 118225452 -58748688 - L1MB7 LINE L1 -106 6078 5316 2244 117 0 0 chrX 118225452 118225750 -58748390 - AluSx SINE Alu -14 298 1 1872 162 7 3 chrX 118225752 118226055 -58748085 - AluJb SINE Alu -8 304 1 3883 135 46 128 chrX 118226055 118226263 -58747877 - L1MB7 LINE L1 -869 5315 5092 2169 117 0 10 chrX 118226263 118226570 -58747570 - AluSg SINE Alu -6 304 1 3883 135 46 128 chrX 118226570 118226616 -58747524 - L1MB7 LINE L1 -1092 5092 5044 2440 63 13 0 chrX 118226616 118226915 -58747225 - AluSp SINE Alu -9 304 2 3883 135 46 128 chrX 118226915 118227144 -58746996 - L1MB7 LINE L1 -1140 5044 4942 2254 92 14 0 chrX 118227253 118227547 -58746593 - AluSx SINE Alu -14 298 1 274 326 194 23 chrX 118227686 118227990 -58746150 + L2 LINE L2 2283 2638 -676 1514 129 80 52 chrX 118228019 118228342 -58745798 - AluY SINE Alu 0 311 1 728 165 30 23 chrX 118228347 118228480 -58745660 - FLAM_C SINE Alu -8 135 2 2426 81 3 7 chrX 118228527 118228834 -58745306 + AluSg SINE Alu 1 306 -4 349 190 38 0 chrX 118228834 118228992 -58745148 + (TATATG)n Simple_repeat Simple_repeat 3 166 0 31 68 0 0 chrX 118229055 118229114 -58745026 + AT_rich Low_complexity Low_complexity 1 59 0 2020 183 60 60 chrX 118229126 118229606 -58744534 - L1ME3 LINE L1 -71 6091 5612 204 390 49 0 chrX 118229768 118229850 -58744290 - L3 LINE CR1 -1426 151 66 429 167 0 0 chrX 118230415 118230475 -58743665 + AluS SINE Alu 2 61 -257 1486 155 33 92 chrX 118230507 118230843 -58743297 - MLT1A2 LTR MaLR 0 374 59 1388 144 19 0 chrX 118230869 118231077 -58743063 + AluJb SINE Alu 75 286 -26 1673 95 0 13 chrX 118231507 118231738 -58742402 - AluSg/x SINE Alu 0 312 85 21 0 0 0 chrX 118232138 118232159 -58741981 + AT_rich Low_complexity Low_complexity 1 21 0 326 294 123 59 chrX 118232818 118232869 -58741271 - MIR3 SINE MIR -5 203 157 2412 98 3 0 chrX 118232869 118233176 -58740964 - AluSp SINE Alu -5 308 1 326 294 123 59 chrX 118233176 118233294 -58740846 - MIR3 SINE MIR -51 157 23 198 128 0 0 chrX 118233298 118233337 -58740803 + (TTTTTG)n Simple_repeat Simple_repeat 2 40 0 915 130 48 0 chrX 118233351 118233497 -58740643 - L1MB2 LINE L1 -7 6164 6012 1091 154 0 0 chrX 118233497 118233666 -58740474 + FRAM SINE Alu 3 171 -5 576 135 40 3 chrX 118233667 118233772 -58740368 - L1MB2 LINE L1 -144 6027 5918 1140 54 20 7 chrX 118233776 118233925 -58740215 - BC200 scRNA scRNA -49 151 1 206 332 29 93 chrX 118234117 118234289 -58739851 + L2 LINE L2 2947 3128 -144 294 29 0 0 chrX 118234289 118234324 -58739816 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2220 85 0 31 chrX 118234326 118234619 -58739521 - AluSx SINE Alu -28 284 1 206 332 29 93 chrX 118234619 118234723 -58739417 + L2 LINE L2 3129 3208 -64 388 309 104 83 chrX 118234791 118235390 -58738750 + L2 LINE L2 2668 3267 -5 218 179 0 0 chrX 118235511 118235550 -58738590 + (TACTG)n Simple_repeat Simple_repeat 1 39 0 358 282 78 0 chrX 118235578 118235681 -58738459 + MER5A DNA MER1_type 79 189 0 232 222 0 0 chrX 118235738 118235783 -58738357 + MIR SINE MIR 191 235 -27 627 325 119 6 chrX 118235916 118236227 -58737913 + L2 LINE L2 2206 2551 -763 348 314 58 8 chrX 118236503 118236624 -58737516 + L2 LINE L2 3142 3268 -4 527 208 76 97 chrX 118237476 118237764 -58736376 + L1ME4a LINE L1 5834 6115 -6 2203 103 3 13 chrX 118238708 118239019 -58735121 - AluSx SINE Alu -4 308 1 2612 52 3 0 chrX 118240276 118240584 -58733556 + AluY SINE Alu 1 309 -2 229 282 115 0 chrX 118240644 118240722 -58733418 + MIR SINE MIR 121 207 -55 2521 54 3 0 chrX 118240884 118241179 -58732961 + AluSp SINE Alu 1 296 -17 1100 156 0 0 chrX 118241207 118241374 -58732766 + AluJo SINE Alu 124 290 -22 21 36 0 0 chrX 118241386 118241414 -58732726 + AT_rich Low_complexity Low_complexity 1 28 0 630 253 53 0 chrX 118241537 118241687 -58732453 - MIR3 SINE MIR -2 206 49 405 247 0 0 chrX 118241837 118241914 -58732226 - MER2 DNA MER2_type -1 344 268 241 29 59 0 chrX 118241984 118242018 -58732122 - MER2 DNA MER2_type -134 211 176 267 122 20 0 chrX 118242074 118242123 -58732017 - MER2 DNA MER2_type -170 175 126 1329 163 5 0 chrX 118242126 118242335 -58731805 + AluJb SINE Alu 85 294 -18 1367 139 170 19 chrX 118242375 118242634 -58731506 - AluSx SINE Alu -14 298 1 943 104 7 7 chrX 118242634 118242769 -58731371 - AluSq/x SINE Alu -178 135 1 314 213 113 0 chrX 118242776 118242856 -58731284 - MER2 DNA MER2_type -256 89 1 2117 113 7 0 chrX 118242879 118243181 -58730959 + AluSx SINE Alu 2 305 -7 2219 110 13 10 chrX 118244129 118244302 -58729838 - AluSx SINE Alu -1 311 135 2327 101 3 0 chrX 118244302 118244599 -58729541 - AluSx SINE Alu -14 298 1 2219 110 13 10 chrX 118244599 118244735 -58729405 - AluSx SINE Alu -177 135 1 472 249 69 26 chrX 118244963 118245152 -58728988 - L1MC5 LINE L1 -50 7911 7715 947 118 0 15 chrX 118245153 118245288 -58728852 - AluJb SINE Alu -179 133 1 233 130 43 0 chrX 118245296 118245342 -58728798 + CT-rich Low_complexity Low_complexity 3 50 0 1688 90 0 5 chrX 118245342 118245554 -58728586 - AluSp SINE Alu -102 211 1 2659 42 0 7 chrX 118245661 118245971 -58728169 + AluY SINE Alu 1 308 -3 2690 30 0 0 chrX 118246146 118246442 -58727698 + AluY SINE Alu 7 302 -9 672 202 67 3 chrX 118246476 118246633 -58727507 + MER5A DNA MER1_type 2 189 0 418 54 0 0 chrX 118247216 118247272 -58726868 - Alu SINE Alu -256 57 2 887 228 0 0 chrX 118247358 118247525 -58726615 + FAM SINE Alu 1 46 -3 2213 110 0 16 chrX 118248390 118248698 -58725442 + AluJb SINE Alu 3 305 -7 225 194 15 30 chrX 118248802 118248869 -58725271 + MIR SINE MIR 157 222 -40 2401 53 0 3 chrX 118249355 118249668 -58724472 - AluY SINE Alu 0 312 1 348 283 158 11 chrX 118249681 118249865 -58724275 - MIR SINE MIR -46 216 6 218 315 56 11 chrX 118250257 118250346 -58723794 + L2 LINE L2 3168 3260 -12 213 154 0 0 chrX 118250360 118250399 -58723741 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 1857 82 131 0 chrX 118250490 118250758 -58723382 - AluSp SINE Alu 0 303 1 1045 175 12 0 chrX 118250761 118250932 -58723208 - AluSg/x SINE Alu -6 304 132 2483 75 3 0 chrX 118250932 118251237 -58722903 - AluSc SINE Alu -3 306 1 2263 102 3 0 chrX 118251238 118251532 -58722608 - AluSg SINE Alu -15 295 1 2325 73 0 7 chrX 118251543 118251887 -58722253 - AluY SINE Alu 0 342 1 2166 121 27 0 chrX 118252359 118252657 -58721483 + AluSx SINE Alu 1 306 -6 2459 83 0 0 chrX 118253400 118253712 -58720428 - AluSx SINE Alu 0 312 1 1863 140 3 53 chrX 118254474 118254795 -58719345 - AluJo SINE Alu -7 305 1 927 192 43 14 chrX 118255166 118255374 -58718766 + L1MD2 LINE L1 5917 6130 -229 484 191 21 0 chrX 118255374 118255468 -58718672 + FRAM SINE Alu 1 96 -80 1826 168 0 14 chrX 118255501 118255691 -58718449 - AluSx SINE Alu 0 323 137 2203 110 3 7 chrX 118255691 118256010 -58718130 - AluSq SINE Alu 0 313 1 1826 168 0 14 chrX 118256010 118256146 -58717994 - AluSx SINE Alu -186 137 1 2451 74 10 0 chrX 118256155 118256454 -58717686 - AluSg SINE Alu -8 302 1 216 349 130 0 chrX 118256503 118256649 -58717491 + L2 LINE L2 3107 3271 -1 2533 47 0 10 chrX 118256656 118256953 -58717187 + AluY SINE Alu 1 294 -17 1503 88 5 0 chrX 118256953 118257138 -58717002 + AluSq SINE Alu 105 293 -20 230 313 90 22 chrX 118257392 118257526 -58716614 + L2 LINE L2 2867 3009 -263 1463 238 142 19 chrX 118257537 118258017 -58716123 - MLT1H LTR MaLR 0 549 11 231 167 0 0 chrX 118258055 118258097 -58716043 + (TATG)n Simple_repeat Simple_repeat 3 44 0 778 172 0 8 chrX 118258210 118258338 -58715802 + FLAM_C SINE Alu 3 129 -4 1085 169 149 8 chrX 118258526 118258792 -58715348 + AluYa5 SINE Alu 6 305 0 217 307 135 58 chrX 118258928 118259001 -58715139 + L2 LINE L2 2554 2620 -694 1791 92 114 48 chrX 118259001 118259274 -58714866 - AluSp SINE Alu -22 291 1 217 307 135 58 chrX 118259274 118259526 -58714614 + L2 LINE L2 2620 2904 -410 1885 153 7 26 chrX 118259649 118259957 -58714183 + AluJb SINE Alu 1 302 -10 1848 126 50 68 chrX 118260170 118260331 -58713809 + THE1C LTR MaLR 1 163 -212 2638 65 0 0 chrX 118260331 118260640 -58713500 - AluSc SINE Alu 0 309 1 1848 126 50 68 chrX 118260640 118260858 -58713282 + THE1C LTR MaLR 163 373 -2 9366 110 16 108 chrX 118260861 118261231 -58712909 + THE1C-int LTR MaLR 1 403 -1177 741 119 0 0 chrX 118261231 118261340 -58712800 - AluSp/q SINE Alu 0 313 205 9366 110 16 108 chrX 118261340 118261371 -58712769 + THE1C-int LTR MaLR 403 435 -1145 2139 106 34 0 chrX 118261371 118261664 -58712476 - AluSp SINE Alu -10 303 1 9366 110 16 108 chrX 118261664 118262638 -58711502 + THE1C-int LTR MaLR 435 1497 -83 2203 91 18 0 chrX 118262638 118262945 -58711195 - AluSp SINE Alu 0 316 5 9366 110 16 108 chrX 118262945 118263117 -58711023 + THE1C-int LTR MaLR 1497 1495 -85 2226 117 0 7 chrX 118263117 118263416 -58710724 + AluSx SINE Alu 1 297 -15 9366 110 16 108 chrX 118263416 118263496 -58710644 + THE1C-int LTR MaLR 1494 1580 0 1926 147 68 14 chrX 118263497 118263852 -58710288 + THE1C LTR MaLR 2 375 0 259 284 30 71 chrX 118263922 118264035 -58710105 + MIR SINE MIR 89 194 -68 2029 128 7 7 chrX 118264035 118264324 -58709816 + AluJb SINE Alu 1 289 -23 259 284 30 71 chrX 118264324 118264379 -58709761 + MIR SINE MIR 194 250 -12 216 0 0 0 chrX 118264433 118264457 -58709683 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1521 123 0 0 chrX 118264501 118264705 -58709435 - AluJb SINE Alu -14 298 95 360 169 0 17 chrX 118264705 118264764 -58709376 - AluS SINE Alu -236 63 6 338 147 15 0 chrX 118264765 118264833 -58709307 + CT-rich Low_complexity Low_complexity 2 70 0 1033 169 7 0 chrX 118264834 118264988 -58709152 - FAM SINE Alu -30 155 1 2134 123 0 3 chrX 118265184 118265476 -58708664 + AluSx SINE Alu 1 291 -21 230 221 105 93 chrX 118265476 118265554 -58708586 - AluSg/x SINE Alu -16 286 205 583 187 0 0 chrX 118265567 118265658 -58708482 - FLAM_A SINE Alu -48 94 4 300 179 0 48 chrX 118265662 118265746 -58708394 + MIR SINE MIR 100 179 -83 2428 91 7 0 chrX 118265779 118266087 -58708053 + AluSg SINE Alu 1 310 0 1757 146 41 27 chrX 118266145 118266440 -58707700 + AluJb SINE Alu 1 299 -13 861 231 27 32 chrX 118266633 118266854 -58707286 - AluJo SINE Alu -92 220 1 2499 59 0 19 chrX 118266865 118267172 -58706968 - AluY SINE Alu -10 301 1 2296 68 41 3 chrX 118267406 118267698 -58706442 + AluSg SINE Alu 1 303 -7 488 285 51 25 chrX 118267836 118268071 -58706069 + L1ME3A LINE L1 5689 5929 -241 1164 129 0 0 chrX 118268136 118268299 -58705841 - AluSq SINE Alu -16 297 135 2158 110 0 36 chrX 118268458 118268767 -58705373 - AluSx SINE Alu -14 298 1 1806 179 172 41 chrX 118268768 118269190 -58704950 + MLT2B1 LTR ERVL 2 490 -30 423 0 0 0 chrX 118269190 118269237 -58704903 + (CA)n Simple_repeat Simple_repeat 2 48 0 1806 179 172 41 chrX 118269237 118269273 -58704867 + MLT2B1 LTR ERVL 490 520 0 2416 62 28 0 chrX 118269305 118269594 -58704546 - AluY SINE Alu -14 297 1 1727 155 14 7 chrX 118269631 118269908 -58704232 - AluJb SINE Alu -33 279 1 2337 90 17 0 chrX 118269917 118270217 -58703923 - AluSq SINE Alu -8 305 1 243 0 0 0 chrX 118271156 118271183 -58702957 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1056 95 14 14 chrX 118271211 118271358 -58702782 - AluSg SINE Alu -163 147 1 2118 113 0 0 chrX 118271530 118271834 -58702306 - AluSx SINE Alu 0 304 1 2301 107 10 0 chrX 118272203 118272503 -58701637 - AluSg SINE Alu -7 303 1 21 0 0 0 chrX 118273141 118273162 -58700978 + AT_rich Low_complexity Low_complexity 1 21 0 181 143 61 61 chrX 118273561 118273610 -58700530 - L2 LINE L2 0 3313 3265 2381 97 0 3 chrX 118273932 118274232 -58699908 + AluSx SINE Alu 2 300 -12 21 36 0 0 chrX 118274473 118274501 -58699639 + AT_rich Low_complexity Low_complexity 1 28 0 1983 142 0 13 chrX 118274517 118274820 -58699320 - AluJb SINE Alu -13 299 1 961 203 25 20 chrX 118274955 118275152 -58698988 + MER63A DNA MER1_type 11 208 -2 815 145 0 113 chrX 118275180 118275267 -58698873 - L1MC4 LINE L1 -131 7911 7816 2538 59 7 0 chrX 118275267 118275571 -58698569 - AluY SINE Alu -5 306 1 2320 78 24 0 chrX 118275581 118275877 -58698263 - AluY SINE Alu -8 303 1 815 145 0 113 chrX 118275877 118275964 -58698176 - L1MC4 LINE L1 -236 7806 7747 2214 126 3 0 chrX 118275966 118276267 -58697873 + AluSx SINE Alu 3 304 -8 218 284 0 0 chrX 118276511 118276578 -58697562 + T-rich Low_complexity Low_complexity 1 67 0 2511 90 0 0 chrX 118276951 118277261 -58696879 + AluSg SINE Alu 1 310 0 741 149 0 16 chrX 118277898 118278019 -58696121 - FRAM SINE Alu -16 160 42 279 0 0 0 chrX 118278025 118278056 -58696084 + (TA)n Simple_repeat Simple_repeat 1 31 0 1342 137 0 23 chrX 118278056 118278275 -58695865 - AluJb SINE Alu -12 300 87 26 0 0 0 chrX 118278451 118278477 -58695663 + AT_rich Low_complexity Low_complexity 1 26 0 867 124 0 16 chrX 118278477 118278598 -58695542 - FLAM_C SINE Alu -19 124 6 254 296 22 52 chrX 118278753 118278806 -58695334 + L2 LINE L2 3178 3231 -82 1257 161 130 68 chrX 118278806 118278879 -58695261 - MER2 DNA MER2_type 0 344 277 2332 93 0 13 chrX 118278879 118279192 -58694948 + AluSc SINE Alu 1 309 0 1257 161 130 68 chrX 118279192 118279441 -58694699 - MER2 DNA MER2_type -67 277 2 254 296 22 52 chrX 118279441 118279522 -58694618 + L2 LINE L2 3231 3308 -5 1018 148 59 40 chrX 118279553 118279755 -58694385 - MER3 DNA MER1_type -3 206 1 1359 141 0 28 chrX 118279803 118280016 -58694124 + AluJo SINE Alu 84 290 -22 194 182 18 73 chrX 118280030 118280085 -58694055 - L2 LINE L2 -35 3278 3227 1771 162 14 7 chrX 118280288 118280452 -58693688 - AluJb SINE Alu -4 298 130 1544 90 9 40 chrX 118280452 118280624 -58693516 - AluSg/x SINE Alu -10 300 135 2218 103 7 0 chrX 118280624 118280924 -58693216 - AluSg SINE Alu -8 302 1 1544 90 9 40 chrX 118280924 118280973 -58693167 - AluSg/x SINE Alu -175 135 86 1771 162 14 7 chrX 118280973 118281104 -58693036 - AluJb SINE Alu -172 130 1 2004 100 57 7 chrX 118281107 118281388 -58692752 - AluSg SINE Alu -15 295 1 636 176 118 0 chrX 118281391 118281510 -58692630 - AluJo/FLAM SINE Alu -169 133 1 374 238 0 0 chrX 118281580 118281660 -58692480 - L2 LINE L2 -1 3312 3233 314 294 49 76 chrX 118281764 118281840 -58692300 + MER5A DNA MER1_type 11 88 -101 1840 160 0 16 chrX 118281840 118282146 -58691994 + AluJb SINE Alu 7 307 -5 314 294 49 76 chrX 118282146 118282253 -58691887 + MER5A DNA MER1_type 88 189 0 225 328 30 0 chrX 118282262 118282396 -58691744 + (TAAG)n Simple_repeat Simple_repeat 2 139 0 2490 57 3 7 chrX 118282514 118282813 -58691327 + AluSg1 SINE Alu 1 298 -11 1673 74 0 78 chrX 118282824 118283067 -58691073 + AluY SINE Alu 88 311 0 1352 146 175 61 chrX 118283445 118283725 -58690415 - AluJb SINE Alu 0 312 1 2798 204 84 35 chrX 118283777 118284250 -58689890 - L1MD2 LINE L1 -17 6342 5815 2268 124 0 0 chrX 118284250 118284557 -58689583 - AluSq SINE Alu -6 307 1 2798 204 84 35 chrX 118284557 118284859 -58689281 - L1MD2 LINE L1 -544 5815 5529 201 263 0 0 chrX 118284867 118284924 -58689216 + A-rich Low_complexity Low_complexity 1 57 0 774 160 0 8 chrX 118285003 118285128 -58689012 + FLAM_C SINE Alu 2 125 -18 604 256 67 54 chrX 118285152 118285242 -58688898 - L1ME4a LINE L1 -161 5960 5873 2555 40 0 17 chrX 118285242 118285543 -58688597 - AluY SINE Alu -15 296 1 604 256 67 54 chrX 118285543 118285840 -58688300 - L1ME4a LINE L1 -248 5873 5566 853 168 15 0 chrX 118285841 118285972 -58688168 - FLAM_C SINE Alu -10 133 1 474 278 59 51 chrX 118286006 118286120 -58688020 - L1ME4a LINE L1 -616 5550 5438 2134 93 48 0 chrX 118286120 118286409 -58687731 - AluSc SINE Alu -6 303 1 474 278 59 51 chrX 118286409 118286482 -58687658 - L1ME4a LINE L1 -728 5438 5367 2352 97 0 0 chrX 118286482 118286790 -58687350 - AluY SINE Alu -3 308 1 474 278 59 51 chrX 118286790 118287018 -58687122 - L1ME4a LINE L1 -799 5367 5135 2335 88 3 3 chrX 118287083 118287388 -58686752 + AluSx SINE Alu 6 310 -2 23 0 0 0 chrX 118287388 118287411 -58686729 + AT_rich Low_complexity Low_complexity 1 23 0 429 20 0 0 chrX 118290291 118290341 -58683799 + (A)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chrX 118290781 118290804 -58683336 + GC_rich Low_complexity Low_complexity 1 23 0 334 132 15 15 chrX 118291344 118291412 -58682728 + CT-rich Low_complexity Low_complexity 4 71 0 282 192 92 58 chrX 118293647 118293767 -58680373 + L1MC5 LINE L1 7774 7897 -64 1818 134 16 36 chrX 118295400 118295706 -58678434 + AluJb SINE Alu 1 300 -12 2260 89 7 3 chrX 118295869 118296160 -58677980 + AluSg SINE Alu 1 292 -18 2219 91 7 7 chrX 118296575 118296872 -58677268 - AluSq SINE Alu -16 297 1 2483 71 3 3 chrX 118296945 118297254 -58676886 - AluSp SINE Alu -4 309 1 1729 125 39 133 chrX 118297273 118297594 -58676546 - Tigger3(Golem) DNA MER2_type 0 3028 2679 2207 116 0 0 chrX 118297594 118297887 -58676253 - AluSg SINE Alu -17 293 1 1729 125 39 133 chrX 118297887 118297949 -58676191 - Tigger3(Golem) DNA MER2_type -349 2679 1 1674 160 7 10 chrX 118298066 118298354 -58675786 + AluJo SINE Alu 1 287 -25 337 315 178 20 chrX 118298512 118298658 -58675482 - MIR SINE MIR -74 188 20 2159 117 7 3 chrX 118299326 118299635 -58674505 - AluSq SINE Alu -3 310 1 243 0 0 0 chrX 118299641 118299668 -58674472 + (T)n Simple_repeat Simple_repeat 1 27 0 772 153 43 120 chrX 118299945 118300154 -58673986 + MER105 DNA DNA 12 204 0 369 296 31 0 chrX 118300460 118300558 -58673582 - MIR SINE MIR 0 262 162 347 197 0 0 chrX 118300558 118300619 -58673521 + MER94 DNA DNA 1 61 -73 242 65 0 0 chrX 118300613 118300644 -58673496 + U2 snRNA snRNA 1 31 -157 * 286 257 149 3 chrX 118300705 118300828 -58673312 - MIR SINE MIR -16 192 50 2198 105 7 3 chrX 118300836 118301132 -58673008 + AluSx SINE Alu 1 297 -15 2423 41 34 3 chrX 118301965 118302259 -58671881 - AluY SINE Alu -8 303 1 1590 138 0 115 chrX 118302425 118302774 -58671366 + AluSg1 SINE Alu 1 309 0 2310 82 0 13 chrX 118302946 118303249 -58670891 + AluSc SINE Alu 1 299 -10 2318 105 3 0 chrX 118303251 118303547 -58670593 + AluSp SINE Alu 1 297 -16 209 254 48 16 chrX 118303561 118303624 -58670516 - L2 LINE L2 -62 3210 3146 2095 134 23 3 chrX 118303909 118304215 -58669925 - AluSx SINE Alu 0 312 1 2406 89 0 0 chrX 118304263 118304565 -58669575 - AluSg SINE Alu -8 302 1 2303 72 3 7 chrX 118305160 118305451 -58668689 - AluSp SINE Alu -22 291 2 1663 154 46 11 chrX 118305692 118305972 -58668168 + AluJo SINE Alu 2 291 -21 382 244 221 23 chrX 118306362 118306534 -58667606 - MIR SINE MIR -25 237 32 562 264 32 84 chrX 118307350 118307521 -58666619 - MIR SINE MIR -65 197 19 1962 155 3 7 chrX 118307521 118307831 -58666309 - AluJb SINE Alu -3 309 1 562 264 32 84 chrX 118307831 118307849 -58666291 - MIR SINE MIR -243 19 19 1863 56 97 4 chrX 118307849 118308116 -58666024 - L1PA11 LINE L1 0 6174 5883 562 264 32 84 chrX 118308116 118308134 -58666006 - MIR SINE MIR -243 19 2 981 123 132 97 chrX 118308353 118308581 -58665559 + MER46A DNA MER2_type 1 236 0 334 241 203 0 chrX 118308667 118308800 -58665340 - MIR SINE MIR -12 250 91 * 713 282 197 24 chrX 118308797 118309137 -58665003 + L2 LINE L2 2912 3310 -3 2463 163 55 31 chrX 118310815 118310990 -58663150 - L1MB3 LINE L1 0 6183 6014 201 39 0 0 chrX 118310990 118311016 -58663124 + (TCCC)n Simple_repeat Simple_repeat 1 26 0 2463 163 55 31 chrX 118311016 118311386 -58662754 - L1MB3 LINE L1 -169 6014 5625 588 276 24 0 chrX 118311388 118311511 -58662629 - L2 LINE L2 -13 3259 3134 1647 175 21 7 chrX 118311748 118312039 -58662101 + AluJo SINE Alu 2 296 -16 2005 100 16 88 chrX 118312055 118312375 -58661765 - AluSx SINE Alu -15 297 1 234 156 0 0 chrX 118312423 118312468 -58661672 + T-rich Low_complexity Low_complexity 1 45 0 236 296 0 12 chrX 118312614 118312695 -58661445 - L1MB3 LINE L1 -507 5614 5535 2362 93 6 3 chrX 118313654 118313966 -58660174 - AluSp SINE Alu 0 313 1 509 297 135 0 chrX 118314112 118314297 -58659843 + L2 LINE L2 3104 3313 0 31 36 0 18 chrX 118314322 118314344 -58659796 + AT_rich Low_complexity Low_complexity 1 22 -33 1587 157 35 21 chrX 118314344 118314631 -58659509 - AluJb SINE Alu -21 291 1 31 36 0 18 chrX 118314631 118314664 -58659476 + AT_rich Low_complexity Low_complexity 22 55 0 1300 171 0 5 chrX 118314920 118315137 -58659003 - AluJo SINE Alu -14 298 83 1462 160 0 35 chrX 118315257 118315513 -58658627 - AluJo SINE Alu -12 300 54 275 310 16 70 chrX 118315544 118315673 -58658467 - MIR SINE MIR -66 142 21 207 317 17 0 chrX 118315672 118315732 -58658408 - L3 LINE CR1 -2 1575 1515 * 637 104 6 58 chrX 118315732 118315905 -58658235 + (TA)n Simple_repeat Simple_repeat 2 165 0 24 67 0 0 chrX 118315908 118315953 -58658187 + AT_rich Low_complexity Low_complexity 1 45 0 242 259 37 49 chrX 118315959 118316040 -58658100 - MIR3 SINE MIR -119 89 10 671 170 0 88 chrX 118316584 118316680 -58657460 - AluJo SINE Alu -94 218 115 2342 72 3 7 chrX 118316680 118316971 -58657169 - AluSg SINE Alu -13 297 8 1964 106 4 0 chrX 118316972 118317236 -58656904 - AluSx SINE Alu -47 265 1 671 170 0 88 chrX 118317236 118317284 -58656856 - AluJo SINE Alu -196 116 85 2351 97 0 0 chrX 118319281 118319589 -58654551 - AluSg1 SINE Alu 0 309 2 2379 131 225 36 chrX 118319672 118320205 -58653935 - MER51A LTR ERV1 0 634 1 223 331 94 87 chrX 118320514 118320813 -58653327 + L2 LINE L2 2896 3196 -76 1512 153 68 56 chrX 118320915 118321046 -58653094 - MER2 DNA MER2_type 0 344 216 2341 95 0 0 chrX 118321046 118321341 -58652799 - AluSx SINE Alu -17 295 1 2362 63 13 13 chrX 118321350 118321653 -58652487 - AluSp SINE Alu -10 303 1 1512 153 68 56 chrX 118321653 118321851 -58652289 - MER2 DNA MER2_type -135 209 1 28 29 0 0 chrX 118322096 118322131 -58652009 + AT_rich Low_complexity Low_complexity 1 35 0 1848 158 0 3 chrX 118322236 118322528 -58651612 - AluJb SINE Alu -21 291 1 600 152 161 0 chrX 118322872 118322984 -58651156 + AluJb SINE Alu 1 130 -182 310 370 75 23 chrX 118323385 118323558 -58650582 + MER5A DNA MER1_type 7 188 -1 2549 132 17 47 chrX 118323666 118324137 -58650003 - MSTB2 LTR MaLR 0 457 1 212 267 50 17 chrX 118324474 118324534 -58649606 + MIR SINE MIR 49 110 -152 2407 73 0 0 chrX 118325109 118325398 -58648742 + AluY SINE Alu 9 297 -14 561 223 48 53 chrX 118325678 118325866 -58648274 + L1MC/D LINE L1 5434 5620 -2188 21 0 0 0 chrX 118325943 118325964 -58648176 + AT_rich Low_complexity Low_complexity 1 21 0 1888 186 26 37 chrX 118326076 118326539 -58647601 - L1ME1 LINE L1 -8 6158 5701 1854 162 61 14 chrX 118326539 118326964 -58647176 - L1ME1 LINE L1 -1105 5041 4597 2725 167 82 61 chrX 118326980 118327331 -58646809 - L1MB3 LINE L1 -7 6176 5834 2157 114 0 10 chrX 118327331 118327629 -58646511 - AluSx SINE Alu -17 295 1 2725 167 82 61 chrX 118327629 118327857 -58646283 - L1MB3 LINE L1 -349 5834 5612 2076 126 7 13 chrX 118327857 118328159 -58645981 - AluSx SINE Alu -12 300 1 2725 167 82 61 chrX 118328159 118328265 -58645875 - L1MB3 LINE L1 -571 5612 5510 501 47 0 0 chrX 118328265 118328329 -58645811 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2725 167 82 61 chrX 118328329 118328425 -58645715 - L1MB3 LINE L1 -673 5510 5377 1468 117 131 50 chrX 118328526 118328809 -58645331 + AluJo SINE Alu 1 306 -6 242 218 55 0 chrX 118329096 118329151 -58644989 + CT-rich Low_complexity Low_complexity 3 60 0 1349 157 0 58 chrX 118329151 118329300 -58644840 - AluJo SINE Alu -31 281 150 1700 159 10 13 chrX 118329300 118329602 -58644538 - AluJb SINE Alu -11 301 1 1349 157 0 58 chrX 118329602 118329694 -58644446 - AluJo SINE Alu -162 150 54 6136 126 90 21 chrX 118329764 118330076 -58644064 + Tigger3b DNA MER2_type 1 290 -2738 1923 145 0 35 chrX 118330076 118330387 -58643753 + AluJb SINE Alu 1 300 -12 6136 126 90 21 chrX 118330387 118330783 -58643357 + Tigger3b DNA MER2_type 290 657 -2371 2333 85 0 0 chrX 118330783 118331078 -58643062 - AluY SINE Alu -16 295 1 6136 126 90 21 chrX 118331078 118331170 -58642970 + Tigger3b DNA MER2_type 657 741 -2287 197 33 33 0 chrX 118331170 118331200 -58642940 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6136 126 90 21 chrX 118331200 118331547 -58642593 + Tigger3b DNA MER2_type 741 1230 -1 1415 157 73 49 chrX 118331640 118331926 -58642214 + AluJo SINE Alu 11 303 -9 336 171 0 0 chrX 118332053 118332116 -58642024 + AluJ/FLAM SINE Alu 24 79 -223 1714 112 25 106 chrX 118332322 118332644 -58641496 - AluYb8 SINE Alu -22 296 1 2251 112 3 0 chrX 118332652 118332955 -58641185 - AluSx SINE Alu -8 304 1 2321 72 3 29 chrX 118333106 118333412 -58640728 - AluSq SINE Alu -15 298 1 262 215 15 0 chrX 118333430 118333495 -58640645 - L1MC5 LINE L1 -897 7064 6999 756 119 45 8 chrX 118333671 118333805 -58640335 - L1MB3 LINE L1 -9 6174 6036 1921 134 39 46 chrX 118333997 118334385 -58639755 - L1MB3 LINE L1 -137 6046 5662 3008 205 43 61 chrX 118334473 118334622 -58639518 - L1MC4a LINE L1 -1 7807 7657 1425 177 90 22 chrX 118334622 118334944 -58639196 + MER2 DNA MER2_type 1 344 0 3008 205 43 61 chrX 118334944 118335056 -58639084 - L1MC4a LINE L1 -151 7657 7544 204 40 0 0 chrX 118335056 118335081 -58639059 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 3008 205 43 61 chrX 118335081 118335430 -58638710 - L1MC4a LINE L1 -264 7544 7190 2449 135 75 9 chrX 118335430 118335868 -58638272 - MLT1C LTR MaLR 0 467 1 3008 205 43 61 chrX 118335868 118336125 -58638015 - L1MC4a LINE L1 -618 7190 6930 2475 67 0 3 chrX 118336125 118336425 -58637715 - AluY SINE Alu -10 301 3 3008 205 43 61 chrX 118336425 118336541 -58637599 - L1MC4a LINE L1 -878 6930 5369 923 219 6 77 chrX 118336680 118337004 -58637136 - AluJo SINE Alu 0 302 2 517 279 117 82 chrX 118337015 118337416 -58636724 - L1MC4a LINE L1 -1457 6351 5937 2537 69 3 0 chrX 118337895 118338201 -58635939 - AluSp SINE Alu -6 307 1 747 160 25 0 chrX 118338211 118338330 -58635810 - FLAM_C SINE Alu -10 123 2 22 35 0 0 chrX 118338763 118338792 -58635348 + AT_rich Low_complexity Low_complexity 1 29 0 597 94 0 0 chrX 118339081 118339166 -58634974 + (TAGG)n Simple_repeat Simple_repeat 2 86 0 1872 147 61 10 chrX 118339818 118340213 -58633927 - L1MB2 LINE L1 -2 6169 5755 4440 184 43 30 chrX 118340213 118340278 -58633862 - L1MB2 LINE L1 -1334 4812 4749 980 200 19 24 chrX 118340278 118340488 -58633652 + MER6B DNA MER2_type 1 209 -1 4440 184 43 30 chrX 118340488 118341232 -58632908 - L1MB2 LINE L1 -1397 4749 3981 2588 133 31 2 chrX 118341232 118341647 -58632493 - MSTC LTR MaLR -1 427 1 4440 184 43 30 chrX 118341647 118341970 -58632170 - L1MB2 LINE L1 -2165 3981 3664 390 74 0 0 chrX 118342989 118343043 -58631097 + (CA)n Simple_repeat Simple_repeat 2 55 0 2174 106 7 0 chrX 118344056 118344349 -58629791 - AluSx SINE Alu -17 295 1 2496 61 3 3 chrX 118344663 118344974 -58629166 - AluY SINE Alu 0 311 1 2042 115 35 0 chrX 118345073 118345361 -58628779 - AluSg SINE Alu -12 298 1 1058 142 12 6 chrX 118345832 118345994 -58628146 - AluJb SINE Alu -15 297 135 22 0 0 0 chrX 118346074 118346096 -58628044 + AT_rich Low_complexity Low_complexity 1 22 0 1082 172 0 0 chrX 118346375 118346538 -58627602 + AluJb SINE Alu 3 165 -147 2150 112 0 7 chrX 118346902 118347198 -58626942 - AluSg SINE Alu -16 294 1 552 68 0 0 chrX 118348135 118348208 -58625932 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 1718 186 0 0 chrX 118348209 118348489 -58625651 - AluJo SINE Alu -32 280 1 2457 66 17 0 chrX 118348741 118349043 -58625097 - AluY SINE Alu -4 307 1 295 306 51 10 chrX 118349123 118349221 -58624919 + L2 LINE L2 3208 3309 -4 1848 159 0 7 chrX 118349342 118349625 -58624515 + AluJb SINE Alu 1 281 -31 1010 151 25 6 chrX 118350223 118350382 -58623758 + FRAM SINE Alu 1 154 -22 431 107 0 0 chrX 118350413 118350469 -58623671 - AluSx SINE Alu -27 283 228 1454 105 0 0 chrX 118350469 118350660 -58623480 - AluSx SINE Alu -121 191 1 2447 83 0 0 chrX 118351777 118352079 -58622061 + AluSx SINE Alu 1 302 -10 268 321 119 30 chrX 118354781 118354915 -58619225 - MIR3 SINE MIR 0 208 63 387 0 0 0 chrX 118355817 118355860 -58618280 + (TAA)n Simple_repeat Simple_repeat 2 44 0 265 308 80 22 chrX 118356306 118356530 -58617610 - L1ME4a LINE L1 -38 6083 5847 23 33 0 0 chrX 118356549 118356579 -58617561 + AT_rich Low_complexity Low_complexity 1 30 0 1445 158 0 92 chrX 118356579 118356907 -58617233 - AluJo SINE Alu -14 298 1 227 224 147 77 chrX 118357309 118357452 -58616688 - MIR SINE MIR 0 262 110 519 170 43 0 chrX 118357898 118357992 -58616148 - Tigger7 DNA MER2_type -1 2586 2489 * 1337 201 72 0 chrX 118357990 118358239 -58615901 - Tigger7 DNA MER2_type -2220 267 1 261 0 0 0 chrX 118358483 118358512 -58615628 + (TA)n Simple_repeat Simple_repeat 2 30 0 781 178 0 0 chrX 118358512 118358641 -58615499 - FLAM_C SINE Alu -4 129 1 264 127 0 0 chrX 118358647 118358702 -58615438 + (TA)n Simple_repeat Simple_repeat 2 56 0 2422 69 0 3 chrX 118358702 118359005 -58615135 - AluY SINE Alu -9 302 1 2103 106 3 3 chrX 118359017 118359299 -58614841 - AluSx SINE Alu -30 282 1 502 215 21 0 chrX 118359323 118359416 -58614724 + MER58C DNA MER1_type 121 215 0 840 223 85 45 chrX 118360204 118360451 -58613689 - MIR SINE MIR 0 262 6 1938 137 0 7 chrX 118361023 118361215 -58612925 - AluSx SINE Alu 0 325 134 292 70 18 18 chrX 118361215 118361272 -58612868 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 1938 137 0 7 chrX 118361272 118361406 -58612734 - AluSx SINE Alu -191 134 1 2302 80 3 0 chrX 118361412 118361718 -58612422 - AluSx SINE Alu 0 307 1 24 53 0 0 chrX 118362110 118362148 -58611992 + AT_rich Low_complexity Low_complexity 1 38 0 1399 170 67 20 chrX 118362162 118362489 -58611651 - L1PA16 LINE L1 -2 6163 5796 1177 172 40 41 chrX 118363131 118363172 -58610968 - MLT1A1 LTR MaLR 0 365 325 2097 126 13 0 chrX 118363172 118363474 -58610666 + AluSq SINE Alu 1 306 -7 1177 172 40 41 chrX 118363474 118363754 -58610386 - MLT1A1 LTR MaLR -40 325 2 794 182 8 0 chrX 118363887 118364019 -58610121 - FLAM_A SINE Alu 0 133 1 184 324 29 0 chrX 118364136 118364204 -58609936 + L2 LINE L2 2691 2760 -554 1504 101 5 24 chrX 118364546 118364809 -58609331 - AluSg/x SINE Alu 0 337 79 349 280 133 18 chrX 118364912 118365130 -58609010 - L1 LINE L1 -2192 3954 3712 1660 240 134 19 chrX 118365139 118365668 -58608472 - MLT1G LTR MaLR 0 590 1 2097 102 25 0 chrX 118366071 118366366 -58607774 - AluSx SINE Alu 0 302 1 336 185 222 0 chrX 118366454 118366562 -58607578 - L1MB7 LINE L1 0 6184 6053 2047 149 0 13 chrX 118366562 118366871 -58607269 - AluSx SINE Alu -4 308 4 216 97 0 0 chrX 118367700 118367731 -58606409 + (TAAG)n Simple_repeat Simple_repeat 3 33 0 288 0 0 0 chrX 118368826 118368858 -58605282 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1383 167 69 43 chrX 118368861 118369137 -58605003 - AluJb SINE Alu -29 283 1 785 167 112 148 chrX 118369139 118369275 -58604865 - AluJo SINE Alu -5 297 158 267 31 0 0 chrX 118369275 118369307 -58604833 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 785 167 112 148 chrX 118369307 118369475 -58604665 - AluJo SINE Alu -144 158 4 24 32 0 0 chrX 118369783 118369814 -58604326 + AT_rich Low_complexity Low_complexity 1 31 0 2215 96 33 7 chrX 118370536 118370839 -58603301 - AluSx SINE Alu -1 311 1 209 259 0 141 chrX 118371000 118371085 -58603055 + MIR SINE MIR 78 150 -112 2202 102 10 10 chrX 118372419 118372722 -58601418 + AluSx SINE Alu 1 303 -9 563 226 32 74 chrX 118372779 118372819 -58601321 + MIR SINE MIR 81 121 -141 1861 118 16 77 chrX 118372819 118373142 -58600998 - AluSx SINE Alu -9 303 1 563 226 32 74 chrX 118373142 118373291 -58600849 + MIR SINE MIR 121 262 0 228 271 14 14 chrX 118373554 118373624 -58600516 + L2 LINE L2 3187 3256 -57 22 0 0 0 chrX 118374114 118374136 -58600004 + AT_rich Low_complexity Low_complexity 1 22 0 526 280 88 16 chrX 118376686 118376879 -58597261 + MIR SINE MIR 1 207 -55 192 40 0 0 chrX 118376879 118376904 -58597236 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 2014 126 18 0 chrX 118378132 118378418 -58595722 - AluSx SINE Alu -21 291 1 257 217 29 14 chrX 118378904 118378973 -58595167 + MIR SINE MIR 81 150 -112 181 333 0 0 chrX 118379538 118379589 -58594551 + L2 LINE L2 2866 2916 -397 24 0 0 0 chrX 118380971 118380995 -58593145 + AT_rich Low_complexity Low_complexity 1 24 0 2541 62 0 0 chrX 118381271 118381578 -58592562 - AluY SINE Alu -4 307 1 3111 174 35 36 chrX 118381855 118382500 -58591640 - L1MB4 LINE L1 -9 6171 5526 2433 92 0 0 chrX 118382500 118382805 -58591335 - AluSx SINE Alu -7 305 1 3111 174 35 36 chrX 118382805 118382849 -58591291 - L1MB4 LINE L1 -654 5526 5483 474 299 104 37 chrX 118382962 118383367 -58590773 + L1MC/D LINE L1 4407 4838 -1308 669 279 79 12 chrX 118383572 118383897 -58590243 + L1MC/D LINE L1 5311 5739 -2069 204 261 101 0 chrX 118383953 118384022 -58590118 - MIR SINE MIR -49 213 138 26 0 0 0 chrX 118384137 118384163 -58589977 + AT_rich Low_complexity Low_complexity 1 26 0 1595 152 46 43 chrX 118384453 118384755 -58589385 - AluJb SINE Alu -9 303 1 24 32 0 0 chrX 118386003 118386034 -58588106 + AT_rich Low_complexity Low_complexity 1 31 0 2613 43 0 0 chrX 118386140 118386443 -58587697 + AluY SINE Alu 1 303 -8 897 110 0 41 chrX 118386585 118386730 -58587410 - AluSg/x SINE Alu -18 294 156 2265 89 26 3 chrX 118387835 118388137 -58586003 - AluSx SINE Alu -1 311 3 328 324 50 14 chrX 118388180 118388319 -58585821 + MIR SINE MIR 9 152 -110 1345 239 80 32 chrX 118388574 118388728 -58585412 - L1M4 LINE L1 -1880 4266 4121 2041 129 0 0 chrX 118388728 118389007 -58585133 + AluSx SINE Alu 6 284 -28 1345 239 80 32 chrX 118389007 118389332 -58584808 - L1M4 LINE L1 -2025 4121 3751 1457 174 17 28 chrX 118389332 118389650 -58584490 - AluJo SINE Alu 0 315 1 1345 239 80 32 chrX 118389650 118389755 -58584385 - L1M4 LINE L1 -2395 3751 3652 2069 128 13 3 chrX 118389809 118390114 -58584026 - AluSx SINE Alu -4 308 1 2029 108 7 4 chrX 118390332 118390610 -58583530 + AluSx SINE Alu 4 282 -30 64 26 0 0 chrX 118390622 118390700 -58583440 + AT_rich Low_complexity Low_complexity 1 78 0 225 0 0 0 chrX 118391432 118391457 -58582683 + (T)n Simple_repeat Simple_repeat 1 25 0 303 139 0 0 chrX 118393170 118393213 -58580927 - 5S rRNA rRNA -78 43 1 388 242 125 17 chrX 118393239 118393359 -58580781 - MIR SINE MIR -6 256 124 2159 115 0 0 chrX 118394133 118394421 -58579719 - AluSx SINE Alu -13 299 12 21 57 0 0 chrX 118394440 118394475 -58579665 + AT_rich Low_complexity Low_complexity 1 35 0 243 0 0 0 chrX 118395832 118395859 -58578281 + (T)n Simple_repeat Simple_repeat 1 27 0 1603 182 21 0 chrX 118396973 118397253 -58576887 - AluSx SINE Alu -26 286 1 2029 143 3 22 chrX 118397438 118397752 -58576388 + AluSx SINE Alu 1 308 -4 234 304 49 49 chrX 118400483 118400585 -58573555 + MIR3 SINE MIR 15 116 -92 268 196 20 20 chrX 118401290 118401341 -58572799 + L2 LINE L2 3210 3260 -12 1435 183 38 4 chrX 118401696 118401959 -58572181 - AluJo SINE Alu -6 306 35 201 269 210 8 chrX 118402244 118402363 -58571777 - L2 LINE L2 -3 3310 3168 1133 147 0 0 chrX 118402380 118402569 -58571571 - AluSx SINE Alu 0 309 121 258 32 0 0 chrX 118402569 118402600 -58571540 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1046 83 0 0 chrX 118402600 118402733 -58571407 - AluSx SINE Alu -180 133 1 216 67 0 0 chrX 118403097 118403127 -58571013 + (TG)n Simple_repeat Simple_repeat 1 30 0 1492 198 3 21 chrX 118403127 118403410 -58570730 - AluJo SINE Alu -33 279 2 653 221 0 44 chrX 118403764 118403900 -58570240 - FLAM_A SINE Alu -2 131 2 722 287 75 19 chrX 118403925 118404284 -58569856 - L1ME2 LINE L1 -300 5864 5486 228 244 77 0 chrX 118404881 118404959 -58569181 + L1ME4a LINE L1 5331 5414 -2394 2223 111 0 0 chrX 118404965 118405262 -58568878 - AluSq SINE Alu -16 297 1 258 323 50 20 chrX 118406481 118406580 -58567560 + MIR SINE MIR 36 137 -71 399 286 68 36 chrX 118407956 118408208 -58565932 + L1ME4a LINE L1 5566 5825 -296 306 237 110 17 chrX 118408245 118408363 -58565777 + L1ME4a LINE L1 5987 6115 -6 2234 123 0 0 chrX 118408375 118408677 -58565463 + AluSx SINE Alu 1 302 -10 2526 62 0 3 chrX 118408822 118409127 -58565013 - AluY SINE Alu -7 304 1 840 136 8 0 chrX 118409188 118409313 -58564827 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chrX 118409321 118409342 -58564798 + AT_rich Low_complexity Low_complexity 1 21 0 1650 149 62 31 chrX 118409659 118410014 -58564126 - L1MA9 LINE L1 0 6312 5947 309 200 0 0 chrX 118410014 118410069 -58564071 - L1MA9 LINE L1 -624 5688 5634 2235 100 0 0 chrX 118410098 118410388 -58563752 + AluSg SINE Alu 3 292 -18 477 109 76 33 chrX 118410389 118410481 -58563659 - L1MA5A LINE L1 -12 6285 6190 479 246 84 14 chrX 118410481 118410696 -58563444 - L1ME LINE L1 -304 5817 5588 1768 138 38 0 chrX 118411407 118411697 -58562443 + AluSx SINE Alu 1 301 -11 832 154 15 0 chrX 118412252 118412382 -58561758 - AluJb SINE Alu -180 132 1 237 33 0 0 chrX 118412882 118412912 -58561228 + (TG)n Simple_repeat Simple_repeat 2 31 0 556 211 53 0 chrX 118413494 118413608 -58560532 - FLAM_A SINE Alu -13 120 1 629 237 60 39 chrX 118413910 118414027 -58560113 + L1ME2 LINE L1 5920 6033 -131 1787 125 57 7 chrX 118414027 118414306 -58559834 - AluSg SINE Alu -17 293 1 629 237 60 39 chrX 118414306 118414420 -58559720 + L1ME2 LINE L1 6033 6156 -8 1024 258 85 28 chrX 118414441 118414828 -58559312 + L1ME LINE L1 5410 5818 -344 216 288 125 12 chrX 118415065 118415145 -58558995 - MER5C DNA MER1_type -235 89 1 1972 128 44 0 chrX 118415195 118415491 -58558649 + AluSg SINE Alu 1 309 -1 344 291 129 38 chrX 118415679 118415889 -58558251 + MIR SINE MIR 28 256 -6 256 247 117 13 chrX 118415976 118416053 -58558087 + L2 LINE L2 3172 3256 -16 542 243 180 15 chrX 118416572 118416778 -58557362 - MIR SINE MIR -22 240 1 966 213 154 15 chrX 118417070 118417496 -58556644 - MLT1G3 LTR MaLR 0 590 1 2366 74 10 0 chrX 118418304 118418602 -58555538 - AluSp SINE Alu -12 301 1 2176 112 17 0 chrX 118418602 118418897 -58555243 - AluSg SINE Alu -10 300 1 231 356 138 31 chrX 118419197 118419486 -58554654 + L2 LINE L2 2559 2878 -436 320 102 169 0 chrX 118419505 118419564 -58554576 - MER116 DNA Mariner -5 75 7 2196 141 0 0 chrX 118419569 118419875 -58554265 + AluSx SINE Alu 3 308 -4 196 298 163 0 chrX 118420048 118420189 -58553951 + L2 LINE L2 3140 3303 -10 383 284 27 110 chrX 118420951 118421250 -58552890 + L2 LINE L2 2575 2848 -466 513 265 170 7 chrX 118421364 118421511 -58552629 + L2 LINE L2 3102 3272 0 300 287 13 121 chrX 118423077 118423234 -58550906 + L2 LINE L2 3115 3254 -18 2398 65 0 0 chrX 118424624 118424915 -58549225 - AluY SINE Alu -20 291 1 238 381 0 10 chrX 118425417 118425514 -58548626 - L2 LINE L2 -564 2750 2655 341 361 112 29 chrX 118425698 118426163 -58547977 + L2 LINE L2 2564 3061 -211 187 289 340 0 chrX 118426256 118426353 -58547787 + L2 LINE L2 3143 3272 0 2057 149 0 3 chrX 118426585 118426893 -58547247 + AluJo SINE Alu 1 307 -5 336 256 65 0 chrX 118426895 118426988 -58547152 - MER5A DNA MER1_type -80 98 9 197 267 150 0 chrX 118427202 118427262 -58546878 - L2 LINE L2 -56 3257 3189 356 273 86 41 chrX 118427318 118427526 -58546614 - MIR SINE MIR -33 229 16 22 111 0 0 chrX 118428341 118428440 -58545700 + AT_rich Low_complexity Low_complexity 1 99 0 253 305 57 38 chrX 118429933 118430038 -58544102 - L2 LINE L2 0 3313 3207 24 32 0 0 chrX 118430564 118430595 -58543545 + AT_rich Low_complexity Low_complexity 1 31 0 35 0 0 0 chrX 118431154 118431189 -58542951 + AT_rich Low_complexity Low_complexity 1 35 0 254 247 110 0 chrX 118432859 118432932 -58541208 - MIR SINE MIR -40 222 142 21 0 0 0 chrX 118432947 118432968 -58541172 + AT_rich Low_complexity Low_complexity 1 21 0 1671 151 19 39 chrX 118433024 118433336 -58540804 + MER1B DNA MER1_type 31 336 -3 337 260 0 26 chrX 118433337 118433414 -58540726 - MIR SINE MIR -160 102 28 207 282 99 0 chrX 118433861 118433932 -58540208 - L2 LINE L2 -10 3262 3185 43508 42 8 1 chrX 118434114 118440224 -58533916 - L1PA4 LINE L1 -3 6152 1 1075 198 180 15 chrX 118440420 118440809 -58533331 - L1ME2 LINE L1 -10 6154 5702 524 51 152 0 chrX 118441301 118441380 -58532760 - L1MA8 LINE L1 -54 6237 6147 4238 240 64 27 chrX 118441382 118442145 -58531995 - L1 LINE L1 -3602 3504 2771 2253 98 7 0 chrX 118442145 118442442 -58531698 - AluSp SINE Alu -14 299 1 4238 240 64 27 chrX 118442442 118444249 -58529891 - L1 LINE L1 -4335 2771 1150 1806 158 30 30 chrX 118444249 118444577 -58529563 - L1 LINE L1 -6702 328 1 433 295 31 17 chrX 118444801 118444956 -58529184 - MIR SINE MIR -62 146 2 242 365 0 39 chrX 118444956 118445043 -58529097 + L2 LINE L2 1450 1532 -1782 692 229 18 24 chrX 118445089 118445259 -58528881 - L1MD3 LINE L1 -1211 6784 6616 2346 185 91 55 chrX 118445281 118445500 -58528640 - L1MC4a LINE L1 -1535 6273 6063 2334 93 0 26 chrX 118445500 118445813 -58528327 - AluSq SINE Alu -8 305 1 2346 185 91 55 chrX 118445813 118445967 -58528173 - L1MC4a LINE L1 -1745 6063 5916 868 168 0 0 chrX 118445967 118446098 -58528042 - FLAM_C SINE Alu -2 131 1 2346 185 91 55 chrX 118446098 118446414 -58527726 - L1MC4a LINE L1 -1892 5916 5558 1088 102 0 0 chrX 118446414 118446551 -58527589 - AluSg SINE Alu -173 137 1 930 183 0 17 chrX 118446551 118446731 -58527409 - AluJb SINE Alu 0 312 136 890 267 102 102 chrX 118446741 118447415 -58526725 - L1MC4a LINE L1 -860 5286 4610 792 186 0 0 chrX 118447415 118447533 -58526607 + FLAM_C SINE Alu 1 118 -15 890 267 102 102 chrX 118447533 118447864 -58526276 - L1MC4a LINE L1 -1536 4610 4281 3034 190 62 62 chrX 118447865 118447982 -58526158 + L1ME2 LINE L1 4909 5024 -1140 3137 171 76 47 chrX 118447982 118448029 -58526111 - LTR58 LTR ERV1 -4 675 631 2060 112 10 3 chrX 118448029 118448325 -58525815 + AluSx SINE Alu 1 298 -14 3137 171 76 47 chrX 118448325 118448933 -58525207 - LTR58 LTR ERV1 -48 631 1 3034 190 62 62 chrX 118448933 118449074 -58525066 + L1ME2 LINE L1 5024 5163 -1001 2107 127 3 7 chrX 118449074 118449382 -58524758 + AluSx SINE Alu 1 307 -5 3034 190 62 62 chrX 118449382 118449597 -58524543 + L1ME2 LINE L1 5163 5376 -788 2310 98 0 10 chrX 118449597 118449902 -58524238 + AluSx SINE Alu 1 302 -10 3034 190 62 62 chrX 118449902 118450555 -58523585 + L1ME2 LINE L1 5376 6051 -113 262 258 59 54 chrX 118450656 118450877 -58523263 + L1MC4 LINE L1 7821 8042 0 232 192 19 19 chrX 118450895 118450947 -58523193 + GA-rich Low_complexity Low_complexity 1 52 0 2109 102 82 14 chrX 118451224 118451577 -58522563 + L1MA9 LINE L1 5808 6184 -128 2152 104 23 7 chrX 118451577 118451884 -58522256 + LTR9 LTR ERV1 1 312 -300 1244 195 173 52 chrX 118452183 118452588 -58521552 + L1MB8 LINE L1 5719 6172 -6 2279 103 7 0 chrX 118452591 118452882 -58521258 + AluSx SINE Alu 1 293 -19 6246 134 21 47 chrX 118452891 118452955 -58521185 + L1MC1 LINE L1 5207 5271 -1062 2126 169 93 15 chrX 118452955 118453352 -58520788 + MSTA LTR MaLR 1 428 0 6246 134 21 47 chrX 118453352 118453367 -58520773 + L1MC1 LINE L1 5271 5285 -1048 1852 144 63 0 chrX 118453367 118453652 -58520488 - AluSx SINE Alu -9 303 1 6246 134 21 47 chrX 118453652 118454666 -58519474 + L1MC1 LINE L1 5285 6259 -74 2382 93 0 0 chrX 118454666 118454966 -58519174 - AluSq SINE Alu -9 304 5 6246 134 21 47 chrX 118454966 118455031 -58519109 + L1MC1 LINE L1 6259 6324 -9 204 40 0 0 chrX 118455049 118455074 -58519066 + (TG)n Simple_repeat Simple_repeat 2 26 0 1810 148 39 0 chrX 118455744 118456028 -58518112 - AluJb SINE Alu -17 295 1 1852 128 7 36 chrX 118456522 118456685 -58517455 + AluJo SINE Alu 11 162 -150 2629 166 99 114 chrX 118456685 118457482 -58516658 + LTR1 LTR ERV1 1 785 0 1852 128 7 36 chrX 118457482 118457624 -58516516 + AluJo SINE Alu 162 307 -5 194 0 39 0 chrX 118457639 118457665 -58516475 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 6169 68 26 41 chrX 118457665 118458610 -58515530 - SVA Other Other -23 1363 433 2509 79 39 104 chrX 118458627 118459144 -58514996 - SVA Other Other -520 866 384 1925 134 3 10 chrX 118459164 118459454 -58514686 - AluSx SINE Alu -24 288 1 254 266 4 17 chrX 118459871 118459963 -58514177 - L1ME LINE L1 -5966 430 39 2317 106 0 0 chrX 118460087 118460388 -58513752 + AluSx SINE Alu 1 301 -11 879 211 10 31 chrX 118460450 118460644 -58513496 + MLT1H LTR MaLR 359 548 -1 23 33 0 0 chrX 118461270 118461300 -58512840 + AT_rich Low_complexity Low_complexity 1 30 0 2093 108 45 0 chrX 118461304 118461591 -58512549 - AluSx SINE Alu -12 300 1 27 49 0 0 chrX 118461664 118461705 -58512435 + AT_rich Low_complexity Low_complexity 1 41 0 1394 206 96 11 chrX 118461768 118462050 -58512090 - AluJo SINE Alu -6 306 1 2057 139 0 3 chrX 118462493 118462859 -58511281 - AluSx SINE Alu 0 365 1 366 181 12 36 chrX 118463200 118463283 -58510857 + U13 snRNA snRNA 22 102 -2 876 206 147 4 chrX 118463719 118463842 -58510298 + L1MD3 LINE L1 7711 7815 -180 2357 78 0 0 chrX 118463842 118464291 -58509849 + AluSx SINE Alu 1 449 0 876 206 147 4 chrX 118464291 118464404 -58509736 + L1MD3 LINE L1 7815 7982 -13 547 252 0 0 chrX 118464941 118465068 -58509072 + L1 LINE L1 5127 5253 -893 583 121 250 0 chrX 118465068 118465184 -58508956 + MLT1A1 LTR MaLR 1 145 -220 803 206 0 0 chrX 118465339 118465470 -58508670 - FLAM_A SINE Alu -1 132 2 8990 163 15 13 chrX 118465657 118466348 -58507792 - L1PA14 LINE L1 0 6161 5473 8348 53 19 4 chrX 118466348 118467340 -58506800 + LTR13 LTR ERVK 1 1007 0 8990 163 15 13 chrX 118467340 118469002 -58505138 - L1PA14 LINE L1 -688 5473 3811 2407 91 112 0 chrX 118469002 118469341 -58504799 - MER51B LTR ERV1 0 377 1 2535 104 6 3 chrX 118469343 118469688 -58504452 - MER51B-int LTR ERV1 -1 7815 7470 641 201 22 22 chrX 118469688 118469827 -58504313 - LTR54B LTR ERV1 -357 141 3 8450 121 25 3 chrX 118469827 118471486 -58502654 - MER51B-int LTR ERV1 -389 7148 5407 2227 91 5 8 chrX 118471463 118471866 -58502274 - MER51B-int LTR ERV1 -2555 2662 2217 * 1879 162 61 12 chrX 118471854 118472311 -58501829 - MER51B-int LTR ERV1 -2774 3172 1516 * 14996 116 115 75 chrX 118472345 118475435 -58498705 - MER51B-int LTR ERV1 -4580 3236 38 1362 222 138 29 chrX 118475457 118475935 -58498205 + LTR10B LTR ERV1 13 542 -5 311 130 0 0 chrX 118475948 118475994 -58498146 - MER51B-int LTR ERV1 -7767 49 4 2220 113 119 0 chrX 118476010 118476347 -58497793 - MER51B LTR ERV1 0 377 1 2005 148 45 0 chrX 118476349 118476681 -58497459 - L1PA14 LINE L1 -2334 3812 3466 635 160 84 179 chrX 118476684 118476946 -58497194 + MER21B LTR ERV1 1 237 -626 6510 57 14 0 chrX 118477046 118477981 -58496159 + L1PA7 LINE L1 5127 6071 -83 868 224 61 0 chrX 118477981 118478146 -58495994 + AluJo SINE Alu 85 259 -53 1885 153 201 54 chrX 118478148 118478626 -58495514 + LTR10A LTR ERV1 1 548 -61 249 169 46 15 chrX 118478669 118478734 -58495406 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 454 287 24 18 chrX 118478738 118478902 -58495238 + L1ME4a LINE L1 5663 5827 -294 189 0 0 0 chrX 118478964 118478985 -58495155 + (TGGGGG)n Simple_repeat Simple_repeat 6 26 0 466 196 51 42 chrX 118478993 118479142 -58494998 + L1ME4a LINE L1 1197 6110 -11 316 250 0 0 chrX 118480440 118480508 -58493632 - L2 LINE L2 0 3313 3246 3920 141 62 34 chrX 118480512 118481219 -58492921 - LTR8A LTR ERV1 0 727 1 735 269 28 0 chrX 118481219 118481401 -58492739 - HUERS-P1 LTR ERV1 0 6263 6077 1492 130 142 55 chrX 118481547 118481877 -58492263 - LTR49-int LTR ERV1 -57 6274 5916 4604 134 40 34 chrX 118481900 118482105 -58492035 - LTR49-int LTR ERV1 -541 5790 5588 2027 130 7 13 chrX 118482105 118482404 -58491736 - AluSx SINE Alu -7 305 9 4604 134 40 34 chrX 118482404 118483032 -58491108 - LTR49-int LTR ERV1 -743 5588 4952 2800 188 33 74 chrX 118483028 118483058 -58491082 - LTR49-int LTR ERV1 -1571 4692 4662 * 1950 134 34 10 chrX 118483058 118483356 -58490784 + AluSq SINE Alu 1 305 -8 2800 188 33 74 chrX 118483356 118483712 -58490428 - LTR49-int LTR ERV1 -1601 4662 4293 1920 161 7 10 chrX 118483712 118484010 -58490130 - AluSx SINE Alu -15 297 1 2800 188 33 74 chrX 118484010 118484183 -58489957 - LTR49-int LTR ERV1 -1970 4293 4164 2352 103 3 0 chrX 118484183 118484495 -58489645 - AluSp SINE Alu 0 313 1 2800 188 33 74 chrX 118484495 118484637 -58489503 - LTR49-int LTR ERV1 -2099 4164 4018 1136 202 5 0 chrX 118484637 118484850 -58489290 + AluJb SINE Alu 92 305 -7 243 178 22 0 chrX 118484860 118484905 -58489235 - MER34C LTR ERV1 -366 219 174 1228 145 5 11 chrX 118484907 118485093 -58489047 - LTR49-int LTR ERV1 -4129 3408 3224 3497 155 39 22 chrX 118485104 118485794 -58488346 + LTR49-int LTR ERV1 1412 2286 -2594 738 272 57 45 chrX 118485789 118486123 -58488017 + LTR49-int LTR ERV1 2081 2407 -3924 * 3157 71 5 15 chrX 118486155 118486563 -58487577 - MLT2A1 LTR ERVL -40 404 1 2853 64 0 0 chrX 118486563 118486921 -58487219 - HERVL-A1 LTR ERVL 0 5654 5297 349 296 66 119 chrX 118487089 118487468 -58486672 + L2 LINE L2 2909 3267 -5 218 179 0 0 chrX 118487589 118487628 -58486512 + (TACTG)n Simple_repeat Simple_repeat 1 39 0 358 282 78 0 chrX 118487656 118487759 -58486381 + MER5A DNA MER1_type 79 189 0 232 222 0 0 chrX 118487816 118487861 -58486279 + MIR SINE MIR 191 235 -27 627 325 119 6 chrX 118487994 118488305 -58485835 + L2 LINE L2 2206 2551 -763 348 314 58 8 chrX 118488581 118488702 -58485438 + L2 LINE L2 3142 3268 -4 527 208 76 97 chrX 118489554 118489842 -58484298 + L1ME4a LINE L1 5834 6115 -6 2203 103 3 13 chrX 118490786 118491097 -58483043 - AluSx SINE Alu -4 308 1 2612 52 3 0 chrX 118492354 118492662 -58481478 + AluY SINE Alu 1 309 -2 229 282 115 0 chrX 118492722 118492800 -58481340 + MIR SINE MIR 121 207 -55 2521 54 3 0 chrX 118492962 118493257 -58480883 + AluSp SINE Alu 1 296 -17 1100 156 0 0 chrX 118493285 118493452 -58480688 + AluJo SINE Alu 124 290 -22 21 36 0 0 chrX 118493464 118493492 -58480648 + AT_rich Low_complexity Low_complexity 1 28 0 630 253 53 0 chrX 118493615 118493765 -58480375 - MIR3 SINE MIR -2 206 49 405 247 0 0 chrX 118493915 118493992 -58480148 - MER2 DNA MER2_type -1 344 268 241 29 59 0 chrX 118494062 118494096 -58480044 - MER2 DNA MER2_type -134 211 176 267 122 20 0 chrX 118494152 118494201 -58479939 - MER2 DNA MER2_type -170 175 126 1329 163 5 0 chrX 118494204 118494413 -58479727 + AluJb SINE Alu 85 294 -18 1360 139 170 19 chrX 118494453 118494712 -58479428 - AluSx SINE Alu -14 298 1 933 104 7 7 chrX 118494712 118494847 -58479293 - AluSq/x SINE Alu -178 135 1 313 225 113 0 chrX 118494854 118494934 -58479206 - MER2 DNA MER2_type -256 89 1 2098 113 7 0 chrX 118494957 118495259 -58478881 + AluSx SINE Alu 2 305 -7 2208 110 13 10 chrX 118496207 118496380 -58477760 - AluSx SINE Alu -1 311 135 2322 98 3 0 chrX 118496380 118496677 -58477463 - AluSx SINE Alu -14 298 1 2208 110 13 10 chrX 118496677 118496813 -58477327 - AluSx SINE Alu -177 135 1 478 245 66 31 chrX 118497034 118497230 -58476910 - L1MC5 LINE L1 -44 7917 7715 939 118 0 15 chrX 118497231 118497366 -58476774 - AluJb SINE Alu -179 133 1 233 130 43 0 chrX 118497374 118497420 -58476720 + CT-rich Low_complexity Low_complexity 3 50 0 1671 90 0 5 chrX 118497420 118497632 -58476508 - AluSp SINE Alu -102 211 1 2634 42 0 7 chrX 118497739 118498049 -58476091 + AluY SINE Alu 1 308 -3 2665 30 0 0 chrX 118498224 118498520 -58475620 + AluY SINE Alu 7 302 -9 724 202 67 3 chrX 118498554 118498711 -58475429 + MER5A DNA MER1_type 2 189 0 446 49 82 0 chrX 118499289 118499350 -58474790 - AluY SINE Alu -251 67 2 882 228 0 0 chrX 118499436 118499603 -58474537 + FAM SINE Alu 1 46 -3 2196 110 0 16 chrX 118500468 118500776 -58473364 + AluJb SINE Alu 3 305 -7 246 194 15 30 chrX 118500880 118500947 -58473193 + MIR SINE MIR 157 222 -40 2369 53 0 3 chrX 118501433 118501746 -58472394 - AluY SINE Alu 0 312 1 405 283 158 11 chrX 118501759 118501943 -58472197 - MIR SINE MIR -46 216 6 195 361 39 3 chrX 118501971 118502056 -58472084 - MIR SINE MIR -68 140 62 246 315 56 11 chrX 118502335 118502424 -58471716 + L2 LINE L2 3168 3260 -12 213 154 0 0 chrX 118502438 118502477 -58471663 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 1968 82 131 0 chrX 118502568 118502836 -58471304 - AluSp SINE Alu 0 303 1 1040 175 12 0 chrX 118502839 118503010 -58471130 - AluSg/x SINE Alu -6 304 132 2462 75 3 0 chrX 118503010 118503315 -58470825 - AluSc SINE Alu -3 306 1 2240 102 3 0 chrX 118503316 118503610 -58470530 - AluSg SINE Alu -15 295 1 2203 86 0 7 chrX 118503621 118503968 -58470172 - AluY SINE Alu 0 352 8 1973 106 4 0 chrX 118503969 118504233 -58469907 - AluSx SINE Alu -47 265 1 2318 91 7 3 chrX 118506278 118506585 -58467555 - AluSg1 SINE Alu 0 309 2 2632 128 225 36 chrX 118506668 118507201 -58466939 - MER51A LTR ERV1 0 634 1 205 331 94 87 chrX 118507510 118507809 -58466331 + L2 LINE L2 2896 3196 -76 1673 153 68 56 chrX 118507911 118508042 -58466098 - MER2 DNA MER2_type 0 344 216 2341 95 0 0 chrX 118508042 118508337 -58465803 - AluSx SINE Alu -17 295 1 2379 63 13 13 chrX 118508346 118508649 -58465491 - AluSp SINE Alu -10 303 1 1673 153 68 56 chrX 118508649 118508847 -58465293 - MER2 DNA MER2_type -135 209 1 28 29 0 0 chrX 118509092 118509127 -58465013 + AT_rich Low_complexity Low_complexity 1 35 0 1841 158 0 3 chrX 118509232 118509524 -58464616 - AluJb SINE Alu -21 291 1 645 152 161 0 chrX 118509868 118509980 -58464160 + AluJb SINE Alu 1 130 -182 296 370 75 23 chrX 118510381 118510554 -58463586 + MER5A DNA MER1_type 7 188 -1 2743 136 17 47 chrX 118510662 118511133 -58463007 - MSTB2 LTR MaLR 0 457 1 211 267 50 17 chrX 118511470 118511530 -58462610 + MIR SINE MIR 49 110 -152 2418 73 0 0 chrX 118512105 118512394 -58461746 + AluY SINE Alu 9 297 -14 642 223 48 53 chrX 118512674 118512862 -58461278 + L1MC/D LINE L1 5434 5620 -2188 21 0 0 0 chrX 118512939 118512960 -58461180 + AT_rich Low_complexity Low_complexity 1 21 0 2100 186 26 37 chrX 118513072 118513535 -58460605 - L1ME1 LINE L1 -8 6158 5701 2062 162 61 14 chrX 118513535 118513960 -58460180 - L1ME1 LINE L1 -1105 5041 4597 3044 165 81 67 chrX 118513976 118514327 -58459813 - L1MB3 LINE L1 -7 6176 5831 2159 114 0 10 chrX 118514327 118514625 -58459515 - AluSx SINE Alu -17 295 1 3044 165 81 67 chrX 118514625 118514853 -58459287 - L1MB3 LINE L1 -352 5831 5608 2064 126 7 13 chrX 118514853 118515155 -58458985 - AluSx SINE Alu -12 300 1 3044 165 81 67 chrX 118515155 118515261 -58458879 - L1MB3 LINE L1 -575 5608 5505 480 35 0 0 chrX 118515261 118515319 -58458821 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 3044 165 81 67 chrX 118515319 118515420 -58458720 - L1MB3 LINE L1 -678 5505 5377 1461 117 131 50 chrX 118515521 118515804 -58458336 + AluJo SINE Alu 1 306 -6 242 218 55 0 chrX 118516091 118516146 -58457994 + CT-rich Low_complexity Low_complexity 3 60 0 1335 157 0 58 chrX 118516146 118516295 -58457845 - AluJo SINE Alu -31 281 150 1693 159 10 13 chrX 118516295 118516597 -58457543 - AluJb SINE Alu -11 301 1 1335 157 0 58 chrX 118516597 118516689 -58457451 - AluJo SINE Alu -162 150 54 6712 127 90 21 chrX 118516759 118517071 -58457069 + Tigger3b DNA MER2_type 1 290 -2738 1906 145 0 35 chrX 118517071 118517382 -58456758 + AluJb SINE Alu 1 300 -12 6712 127 90 21 chrX 118517382 118517778 -58456362 + Tigger3b DNA MER2_type 290 657 -2371 2301 85 3 0 chrX 118517778 118518072 -58456068 - AluY SINE Alu -16 295 1 6712 127 90 21 chrX 118518072 118518164 -58455976 + Tigger3b DNA MER2_type 657 741 -2287 197 33 33 0 chrX 118518164 118518194 -58455946 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 6712 127 90 21 chrX 118518194 118518541 -58455599 + Tigger3b DNA MER2_type 741 1230 -1 1403 157 73 49 chrX 118518634 118518920 -58455220 + AluJo SINE Alu 11 303 -9 359 171 0 0 chrX 118519047 118519110 -58455030 + AluJ/FLAM SINE Alu 24 79 -223 1711 112 25 106 chrX 118519316 118519638 -58454502 - AluYb8 SINE Alu -22 296 1 2249 112 3 0 chrX 118519646 118519949 -58454191 - AluSx SINE Alu -8 304 1 2329 72 3 29 chrX 118520100 118520406 -58453734 - AluSq SINE Alu -15 298 1 277 268 12 0 chrX 118520407 118520489 -58453651 - L1MC5 LINE L1 -880 7081 6999 826 109 72 7 chrX 118520661 118520799 -58453341 - L1MB3 LINE L1 -1 6182 6036 2104 131 58 45 chrX 118520981 118521379 -58452761 - L1MB3 LINE L1 -119 6064 5662 3399 205 49 61 chrX 118521461 118521616 -58452524 - L1MD2 LINE L1 -10 6349 6194 1569 177 90 22 chrX 118521616 118521938 -58452202 + MER2 DNA MER2_type 1 344 0 3399 205 49 61 chrX 118521938 118522050 -58452090 - L1MD2 LINE L1 -165 6194 6082 204 40 0 0 chrX 118522050 118522075 -58452065 + (CACCAT)n Simple_repeat Simple_repeat 2 26 0 3399 205 49 61 chrX 118522075 118522424 -58451716 - L1MD2 LINE L1 -277 6082 5730 2664 135 75 9 chrX 118522424 118522862 -58451278 - MLT1C LTR MaLR 0 467 1 3399 205 49 61 chrX 118522862 118523119 -58451021 - L1MD2 LINE L1 -629 5730 5485 2479 67 0 3 chrX 118523119 118523418 -58450722 - AluY SINE Alu -11 300 3 3399 205 49 61 chrX 118523418 118523534 -58450606 - L1MD2 LINE L1 -874 5485 5369 1030 219 6 77 chrX 118523673 118523997 -58450143 - AluJo SINE Alu 0 302 2 246 270 120 82 chrX 118524008 118524408 -58449732 - L1MC4a LINE L1 -1457 6351 5937 2546 69 3 0 chrX 118524887 118525193 -58448947 - AluSp SINE Alu -6 307 1 795 160 25 0 chrX 118525203 118525322 -58448818 - FLAM_C SINE Alu -10 123 2 22 35 0 0 chrX 118525755 118525784 -58448356 + AT_rich Low_complexity Low_complexity 1 29 0 642 113 0 0 chrX 118526073 118526170 -58447970 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 2072 147 61 10 chrX 118526822 118527217 -58446923 - L1MB2 LINE L1 -2 6169 5755 4939 183 43 30 chrX 118527217 118527282 -58446858 - L1MB2 LINE L1 -1334 4812 4749 1075 200 19 24 chrX 118527282 118527492 -58446648 + MER6B DNA MER2_type 1 209 -1 4939 183 43 30 chrX 118527492 118528236 -58445904 - L1MB2 LINE L1 -1397 4749 3981 2776 135 31 2 chrX 118528236 118528651 -58445489 - MSTC LTR MaLR -1 427 1 4939 183 43 30 chrX 118528651 118528974 -58445166 - L1MB2 LINE L1 -2165 3981 3664 390 74 0 0 chrX 118529993 118530047 -58444093 + (CA)n Simple_repeat Simple_repeat 2 55 0 2190 106 7 0 chrX 118531060 118531353 -58442787 - AluSx SINE Alu -17 295 1 2533 58 3 3 chrX 118531668 118531979 -58442161 - AluY SINE Alu 0 311 1 2061 115 35 0 chrX 118532078 118532366 -58441774 - AluSg SINE Alu -12 298 1 1056 142 12 6 chrX 118532837 118532999 -58441141 - AluJb SINE Alu -15 297 135 22 0 0 0 chrX 118533079 118533101 -58441039 + AT_rich Low_complexity Low_complexity 1 22 0 1082 172 0 0 chrX 118533380 118533543 -58440597 + AluJb SINE Alu 3 165 -147 2162 112 0 7 chrX 118533907 118534203 -58439937 - AluSg SINE Alu -16 294 1 516 72 0 0 chrX 118535140 118535209 -58438931 + (TGGA)n Simple_repeat Simple_repeat 1 69 0 1716 186 0 0 chrX 118535210 118535490 -58438650 - AluJo SINE Alu -32 280 1 1958 73 20 0 chrX 118535741 118535986 -58438154 - AluY SINE Alu -3 308 59 180 241 17 52 chrX 118543974 118544032 -58430108 + L2 LINE L2 2415 2470 -844 45785 66 3 8 chrX 118552534 118556185 -58417955 - HERVL-A1 LTR ERVL -4 5650 2041 2276 105 0 0 chrX 118556185 118556479 -58417661 - AluSg SINE Alu -16 294 1 45785 66 3 8 chrX 118556479 118558509 -58415631 - HERVL-A1 LTR ERVL -3613 2041 1 3538 73 21 5 chrX 118558509 118558946 -58415194 - MLT2A1 LTR ERVL 0 444 1 1416 143 14 0 chrX 118558948 118559165 -58414975 - LTR8A-int LTR ERV1 -4706 1240 1021 2168 224 23 22 chrX 118559167 118560102 -58414038 - LTR8A-int LTR ERV1 -5169 1094 1 3828 142 66 24 chrX 118560102 118560800 -58413340 - LTR8A LTR ERV1 0 727 1 262 170 19 19 chrX 118560800 118560853 -58413287 - L2 LINE L2 -67 3246 3194 209 280 0 0 chrX 118560899 118560949 -58413191 - L2 LINE L2 -3 3310 3261 4122 178 31 6 chrX 118561042 118561838 -58412302 - L1MB7 LINE L1 -54 6130 5315 32 26 0 0 chrX 118561874 118561913 -58412227 + AT_rich Low_complexity Low_complexity 1 39 0 1815 156 7 3 chrX 118561913 118562225 -58411915 - AluJo SINE Alu 0 313 1 1014 201 19 65 chrX 118562227 118562341 -58411799 - L1MB7 LINE L1 -816 5330 5212 2287 83 30 0 chrX 118562341 118562643 -58411497 + AluSp SINE Alu 1 311 -2 1014 201 19 65 chrX 118562643 118562851 -58411289 - L1MB7 LINE L1 -934 5212 5023 831 190 0 0 chrX 118562854 118562991 -58411149 + FRAM SINE Alu 1 137 -39 5890 242 47 19 chrX 118562996 118563372 -58410768 - L1M4 LINE L1 -1134 5012 4648 1780 130 3 51 chrX 118563372 118563665 -58410475 - AluJb SINE Alu 0 312 34 5890 242 47 19 chrX 118563665 118565018 -58409122 - L1M4 LINE L1 -1498 4648 3184 2340 79 21 0 chrX 118565018 118565308 -58408832 + AluSq SINE Alu 1 296 -17 5890 242 47 19 chrX 118565308 118565472 -58408668 - L1M4 LINE L1 -2962 3184 3026 2066 266 101 16 chrX 118565527 118566254 -58407886 + L1ME1 LINE L1 5287 6242 -92 2451 107 48 25 chrX 118566254 118566610 -58407530 - THE1B LTR MaLR 0 364 1 2066 266 101 16 chrX 118566610 118566709 -58407431 + L1ME1 LINE L1 6242 6331 -3 2087 118 3 13 chrX 118566753 118567067 -58407073 - AluSq SINE Alu -2 311 1 1779 129 24 0 chrX 118567272 118567520 -58406620 - AluSx SINE Alu -58 254 1 994 151 0 0 chrX 118568246 118568392 -58405748 + AluSg/x SINE Alu 142 287 -23 270 0 0 0 chrX 118568394 118568424 -58405716 + (TA)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chrX 118568423 118568449 -58405691 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 2164 123 6 28 chrX 118569262 118569580 -58404560 - AluSx SINE Alu -1 311 1 2693 55 0 0 chrX 118570643 118570953 -58403187 - AluSx SINE Alu -2 310 1 301 180 22 56 chrX 118571302 118571391 -58402749 - L1M4 LINE L1 -3170 2976 2891 255 103 0 0 chrX 118571521 118571560 -58402580 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 196 22 23 chrX 118571560 118571707 -58402433 + L1MC4 LINE L1 7899 7995 0 476 145 14 0 chrX 118571792 118571861 -58402279 + FAM SINE Alu 95 164 -21 2142 121 0 0 chrX 118571873 118572175 -58401965 + AluSx SINE Alu 1 302 0 38 51 0 0 chrX 118572384 118572443 -58401697 + AT_rich Low_complexity Low_complexity 1 59 0 1670 167 23 26 chrX 118572510 118572815 -58401325 + AluJo SINE Alu 1 304 -8 1858 157 0 17 chrX 118573013 118573313 -58400827 - AluJb SINE Alu -17 295 1 412 227 25 17 chrX 118573391 118573510 -58400630 - L1MC4 LINE L1 -4 8038 7919 201 147 0 0 chrX 118573577 118573611 -58400529 + (TCC)n Simple_repeat Simple_repeat 2 35 0 1709 167 0 42 chrX 118573659 118573947 -58400193 + AluJb SINE Alu 1 277 -35 180 0 0 0 chrX 118573947 118573967 -58400173 + (CA)n Simple_repeat Simple_repeat 1 20 0 1709 167 0 42 chrX 118573967 118573989 -58400151 + AluJb SINE Alu 277 298 -14 777 201 56 33 chrX 118573989 118574202 -58399938 - L1MC4 LINE L1 -95 7713 7506 1711 121 38 0 chrX 118574202 118574441 -58399699 + AluSx SINE Alu 1 248 -64 1507 130 9 5 chrX 118574441 118574656 -58399484 - AluSx SINE Alu -92 220 5 777 201 56 33 chrX 118574656 118574671 -58399469 - L1MC4 LINE L1 -241 7567 7554 469 145 14 0 chrX 118574672 118574741 -58399399 - FAM SINE Alu -21 164 95 494 204 22 21 chrX 118574826 118574981 -58399159 - L1MD3 LINE L1 0 8041 7893 233 89 22 0 chrX 118575019 118575064 -58399076 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 6729 17 0 0 chrX 118575064 118575813 -58398327 - L1PA3 LINE L1 -16 6139 5391 301 180 22 56 chrX 118575916 118576005 -58398135 + L1M4 LINE L1 2891 2976 -3170 2366 98 0 0 chrX 118576355 118576660 -58397480 + AluSx SINE Alu 1 305 -7 924 204 117 34 chrX 118576660 118576925 -58397215 - L1MC4 LINE L1 -369 7673 7387 1880 156 13 7 chrX 118576933 118577241 -58396899 - AluJo SINE Alu -2 310 1 234 0 0 0 chrX 118577521 118577547 -58396593 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 1885 148 7 3 chrX 118577547 118577830 -58396310 - AluSx SINE Alu -28 284 1 670 106 0 97 chrX 118577832 118577860 -58396280 - AluSq/x SINE Alu -179 134 105 2656 40 0 0 chrX 118577860 118578162 -58395978 - AluY SINE Alu -9 302 1 670 106 0 97 chrX 118578162 118578246 -58395894 - AluSq/x SINE Alu -208 105 33 500 244 99 58 chrX 118578295 118578626 -58395514 - L1MEd LINE L1 -4780 1530 1129 2934 207 83 20 chrX 118578632 118578979 -58395161 - MER82 DNA MER2_type -1 652 329 2135 22 0 0 chrX 118578979 118579246 -58394894 + L1PA4 LINE L1 5908 6174 0 2934 207 83 20 chrX 118579246 118579510 -58394630 - MER82 DNA MER2_type -324 329 1 2272 102 3 34 chrX 118579543 118579866 -58394274 - AluSp SINE Alu 0 313 1 539 232 60 148 chrX 118579867 118580285 -58393855 - L1MEd LINE L1 -5040 1079 699 911 193 0 0 chrX 118580287 118580432 -58393708 - AluJb SINE Alu -28 284 140 1914 133 7 23 chrX 118580927 118581229 -58392911 - AluSx SINE Alu -15 297 1 1675 192 0 10 chrX 118581308 118581610 -58392530 - AluJo SINE Alu -9 303 5 624 116 0 0 chrX 118583259 118583354 -58390786 + (GGGA)n Simple_repeat Simple_repeat 4 98 0 2256 108 3 13 chrX 118583369 118583684 -58390456 - AluSx SINE Alu 0 312 1 254 193 0 35 chrX 118583793 118583850 -58390290 + MLT1B LTR MaLR 134 188 -186 863 229 24 0 chrX 118583892 118584097 -58390043 + MLT1B LTR MaLR 181 390 0 1646 168 32 3 chrX 118584468 118584753 -58389387 + AluJb SINE Alu 1 293 -19 220 291 25 0 chrX 118584881 118584960 -58389180 + (TATG)n Simple_repeat Simple_repeat 3 83 0 333 289 67 7 chrX 118584960 118585095 -58389045 + L1MB1 LINE L1 5152 5294 -852 2845 195 109 29 chrX 118585121 118586068 -58388072 - L1MB4 LINE L1 -80 6100 5080 1814 156 0 26 chrX 118586068 118586376 -58387764 + AluJo SINE Alu 1 300 -12 2876 150 6 22 chrX 118586377 118586869 -58387271 + L1MB1 LINE L1 5489 5972 -196 2089 131 0 0 chrX 118587494 118587791 -58386349 + AluSx SINE Alu 1 297 -15 1282 152 48 13 chrX 118588524 118588754 -58385386 + L1MB1 LINE L1 5930 6167 -1 6269 219 57 33 chrX 118588763 118590971 -58383169 - L1M4c LINE L1 -4267 2379 18 1959 150 14 0 chrX 118590971 118591265 -58382875 - AluSx SINE Alu -14 298 1 6269 219 57 33 chrX 118591265 118591281 -58382859 - L1M4c LINE L1 -6628 18 4 1681 99 5 5 chrX 118591295 118591518 -58382622 + MER30 DNA MER1_type 8 230 0 518 312 116 21 chrX 118591559 118591937 -58382203 + L1ME4a LINE L1 5380 5793 -2015 1628 183 10 0 chrX 118592462 118592752 -58381388 - AluJo SINE Alu -8 304 12 295 208 111 0 chrX 118592904 118592976 -58381164 - MIR SINE MIR -95 113 34 590 261 23 0 chrX 118593476 118593606 -58380534 + MER63 DNA MER1_type 2 760 -302 234 0 0 0 chrX 118594087 118594113 -58380027 + (CA)n Simple_repeat Simple_repeat 1 26 0 329 190 190 0 chrX 118594132 118594211 -58379929 - L1MC5 LINE L1 -72 7889 7796 2517 102 36 36 chrX 118594306 118594670 -58379470 + THE1B LTR MaLR 1 364 0 530 247 156 0 chrX 118594681 118594867 -58379273 - MIR SINE MIR 0 262 48 296 183 33 0 chrX 118594886 118594946 -58379194 + L1ME4a LINE L1 5989 6050 -71 758 178 0 8 chrX 118595521 118595650 -58378490 - MLT2F LTR ERVL -516 147 20 300 304 6 82 chrX 118595706 118595864 -58378276 + L3 LINE CR1 1323 1468 -109 312 372 14 7 chrX 118595918 118596063 -58378077 - L2 LINE L2 -683 2631 2486 1769 187 106 92 chrX 118596065 118596557 -58377583 - MLT1D LTR MaLR 0 505 7 279 294 78 73 chrX 118596626 118596830 -58377310 - L2 LINE L2 -888 2426 2222 423 284 52 9 chrX 118596846 118596962 -58377178 + L2 LINE L2 3193 3313 0 444 256 27 2 chrX 118597208 118597329 -58376811 - MIR3 SINE MIR -9 199 75 409 349 15 45 chrX 118597337 118597535 -58376605 - L2 LINE L2 -1 3271 3080 1853 148 0 24 chrX 118599329 118599626 -58374514 + AluJb SINE Alu 3 292 -20 696 172 0 67 chrX 118599735 118599869 -58374271 + FLAM_A SINE Alu 1 125 -8 22 35 0 0 chrX 118599879 118599908 -58374232 + AT_rich Low_complexity Low_complexity 1 29 0 948 113 0 0 chrX 118600046 118600170 -58373970 + FLAM_C SINE Alu 1 124 -19 26 30 0 0 chrX 118600170 118600203 -58373937 + AT_rich Low_complexity Low_complexity 1 33 0 27 86 0 19 chrX 118600300 118600378 -58373762 + AT_rich Low_complexity Low_complexity 1 78 -25 2216 119 0 0 chrX 118600378 118600681 -58373459 + AluSq SINE Alu 1 303 -10 27 86 0 19 chrX 118600681 118600707 -58373433 + AT_rich Low_complexity Low_complexity 78 103 0 1629 121 27 4 chrX 118600727 118600983 -58373157 - Tigger5 DNA MER2_type -13 2310 2049 309 238 0 0 chrX 118601178 118601241 -58372899 - MLT1K LTR MaLR -2 586 524 285 29 0 0 chrX 118601463 118601497 -58372643 + (TG)n Simple_repeat Simple_repeat 1 34 0 1956 146 0 19 chrX 118601498 118601813 -58372327 - AluJb SINE Alu -3 309 1 2647 176 26 0 chrX 118602277 118602692 -58371448 - MSTB LTR MaLR 0 426 1 698 226 44 13 chrX 118602752 118602829 -58371311 - MLT1I LTR MaLR 0 409 336 2608 39 3 3 chrX 118602829 118603139 -58371001 + AluY SINE Alu 1 310 -1 698 226 44 13 chrX 118603139 118603220 -58370920 - MLT1I LTR MaLR -73 336 246 428 215 47 0 chrX 118603295 118603402 -58370738 - MLT1I LTR MaLR -297 112 1 2236 70 4 0 chrX 118604420 118604693 -58369447 + AluSq SINE Alu 1 274 -39 227 184 0 20 chrX 118604704 118604753 -58369387 + (CGGGG)n Simple_repeat Simple_repeat 5 52 0 513 294 127 75 chrX 118604977 118605542 -58368598 - L2 LINE L2 -7 3265 2667 332 210 83 4 chrX 118605722 118605821 -58368319 + MLT1I LTR MaLR 317 406 -3 292 314 40 16 chrX 118606379 118606432 -58367708 + LTR67 LTR ERVL 431 557 0 299 169 99 0 chrX 118606432 118606503 -58367637 + MLT1K LTR MaLR 511 588 0 328 250 0 0 chrX 118606513 118606581 -58367559 - L2 LINE L2 0 3313 3246 363 252 117 0 chrX 118608274 118608385 -58365755 - L2 LINE L2 -1 3271 3148 296 220 170 10 chrX 118608393 118608493 -58365647 + MIR SINE MIR 105 220 -42 26 0 0 0 chrX 118608578 118608604 -58365536 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chrX 118609028 118609058 -58365082 + AT_rich Low_complexity Low_complexity 1 30 0 4473 204 111 95 chrX 118609655 118610677 -58363463 - L1MD3 LINE L1 -1 8037 6995 2066 241 124 8 chrX 118610677 118611207 -58362933 - MLT1G1 LTR MaLR 0 595 4 4473 204 111 95 chrX 118611207 118611763 -58362377 - L1MD3 LINE L1 -1043 6995 6450 365 329 29 15 chrX 118612025 118612162 -58361978 + L2 LINE L2 2694 2832 -482 893 278 183 37 chrX 118612162 118612778 -58361362 - HAL1 LINE L1 -1800 707 2 478 299 28 7 chrX 118613006 118613150 -58360990 - MIR3 SINE MIR -49 159 13 315 315 35 35 chrX 118614058 118614201 -58359939 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chrX 118614876 118614918 -58359222 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chrX 118615014 118615078 -58359062 + G-rich Low_complexity Low_complexity 1 64 0 787 305 4 21 chrX 118615605 118615844 -58358296 - MIR SINE MIR -25 237 3 267 314 50 6 chrX 118616073 118616089 -58358051 - L1MA10 LINE L1 0 6334 6319 1347 231 34 0 chrX 118616089 118616383 -58357757 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chrX 118616388 118616727 -58357413 + CT-rich Low_complexity Low_complexity 1 341 0 1523 163 22 22 chrX 118616753 118617030 -58357110 - AluJo SINE Alu -3 309 33 1500 185 48 0 chrX 118617030 118617300 -58356840 - L1ME1 LINE L1 -307 5859 5577 252 204 250 65 chrX 118617301 118617409 -58356731 + MER34 LTR ERV1 5 132 -410 1417 198 39 61 chrX 118617483 118617893 -58356247 + MER39 LTR ERV1 307 707 0 6448 182 38 38 chrX 118617893 118618157 -58355983 - L1ME1 LINE L1 -743 5403 5140 1880 100 31 21 chrX 118618157 118618446 -58355694 - L1MA10 LINE L1 -1 6333 6042 6448 182 38 38 chrX 118618446 118620024 -58354116 - L1ME1 LINE L1 -1006 5140 3658 660 298 5 6 chrX 118621000 118621193 -58352947 - MIR SINE MIR -34 228 38 810 210 23 109 chrX 118621576 118621811 -58352329 - MIR SINE MIR -10 252 39 1204 153 9 37 chrX 118621811 118622026 -58352114 - MER3 DNA MER1_type 0 209 1 810 210 23 109 chrX 118622026 118622047 -58352093 - MIR SINE MIR -223 39 18 1892 146 3 7 chrX 118623076 118623546 -58350594 - AluJb SINE Alu 0 470 2 1800 81 0 69 chrX 118623838 118624099 -58350041 - AluSx SINE Alu -69 243 1 2458 93 0 3 chrX 118625050 118625363 -58348777 - AluSx SINE Alu 0 312 1 799 163 124 28 chrX 118625688 118625866 -58348274 - MER31B LTR ERV1 0 466 272 418 271 60 67 chrX 118625949 118626136 -58348004 + MER5B DNA MER1_type 2 176 -2 2361 96 3 0 chrX 118626454 118626756 -58347384 - AluSp SINE Alu -10 303 1 234 150 0 0 chrX 118627015 118627055 -58347085 + (TG)n Simple_repeat Simple_repeat 1 40 0 607 274 104 0 chrX 118628199 118628363 -58345777 + MER91A DNA MER1_type 1 181 -15 804 151 47 73 chrX 118628696 118628775 -58345365 + MER53 DNA DNA 1 81 -108 1900 142 17 0 chrX 118628775 118629064 -58345076 + AluJo SINE Alu 3 296 -16 804 151 47 73 chrX 118629064 118629176 -58344964 + MER53 DNA DNA 81 187 -2 1035 149 28 11 chrX 118629231 118629412 -58344728 - MER5A DNA MER1_type 0 189 6 2110 111 10 0 chrX 118630413 118630710 -58343430 + AluSq SINE Alu 2 301 -12 2003 198 58 112 chrX 118630796 118631310 -58342830 + LTR8 LTR ERV1 1 541 -150 1858 111 57 7 chrX 118631310 118631616 -58342524 - AluSx SINE Alu 0 320 1 2003 198 58 112 chrX 118631616 118631689 -58342451 + LTR8 LTR ERV1 541 549 -142 2203 86 0 0 chrX 118631689 118632010 -58342130 + AluSg SINE Alu 1 321 0 2003 198 58 112 chrX 118632010 118632124 -58342016 + LTR8 LTR ERV1 549 668 -23 187 243 0 0 chrX 118632266 118632303 -58341837 - L2 LINE L2 -12 3301 3265 * 268 212 68 68 chrX 118632281 118632399 -58341741 - MIR SINE MIR -21 241 124 2123 144 0 0 chrX 118632409 118632721 -58341419 - AluSx SINE Alu 0 312 1 2260 141 34 3 chrX 118633037 118633419 -58340721 - L1MA8 LINE L1 -1 6290 5897 721 159 19 0 chrX 118633433 118633590 -58340550 + CT-rich Low_complexity Low_complexity 2 161 0 2124 134 19 0 chrX 118633592 118633899 -58340241 - AluSq SINE Alu 0 313 1 246 282 84 0 chrX 118634165 118634236 -58339904 - MER117 DNA MER1_type -120 77 1 375 229 0 0 chrX 118635199 118635269 -58338871 + MER103 DNA DNA 44 113 -53 2498 130 32 80 chrX 118635269 118635768 -58338372 + L1MA7 LINE L1 5816 6290 -1 2054 155 66 143 chrX 118635794 118636341 -58337799 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chrX 118637304 118637327 -58336813 + AT_rich Low_complexity Low_complexity 1 23 0 343 338 30 38 chrX 118637488 118637621 -58336519 - L2 LINE L2 -4 3268 3137 1122 288 106 60 chrX 118637712 118638021 -58336119 - MLT1L LTR MaLR -5 610 317 1902 131 3 24 chrX 118638021 118638318 -58335822 - AluJb SINE Alu -17 295 5 1122 288 106 60 chrX 118638318 118638431 -58335709 - MLT1L LTR MaLR -298 317 211 923 190 23 0 chrX 118638431 118638605 -58335535 + MER5B DNA MER1_type 1 178 0 1122 288 106 60 chrX 118638605 118638764 -58335376 - MLT1L LTR MaLR -404 211 1 181 326 112 49 chrX 118638842 118639207 -58334933 + L2 LINE L2 2286 2673 -641 589 196 17 69 chrX 118639422 118639550 -58334590 + MIR SINE MIR 31 149 -113 1963 148 0 7 chrX 118639550 118639847 -58334293 - AluSx SINE Alu -17 295 1 589 196 17 69 chrX 118639847 118639891 -58334249 + MIR SINE MIR 149 194 -68 350 285 91 40 chrX 118640710 118640898 -58333242 + MIR SINE MIR 12 221 -41 306 87 0 0 chrX 118640920 118640966 -58333174 + (TATG)n Simple_repeat Simple_repeat 2 47 0 2145 100 11 0 chrX 118640966 118641245 -58332895 - AluSg SINE Alu -28 282 1 2267 93 0 7 chrX 118641970 118642259 -58331881 + AluSx SINE Alu 1 287 -25 4407 162 30 58 chrX 118642271 118642619 -58331521 - L1MB5 LINE L1 0 6174 5818 1871 150 0 32 chrX 118642619 118642933 -58331207 - AluJb SINE Alu -8 304 1 4407 162 30 58 chrX 118642933 118643439 -58330701 - L1MB5 LINE L1 -356 5818 5299 1747 164 31 17 chrX 118643439 118643731 -58330409 - AluJb SINE Alu -16 296 1 1890 167 0 16 chrX 118643737 118644049 -58330091 - AluJo SINE Alu -5 307 1 1614 196 32 0 chrX 118644054 118644339 -58329801 - AluJb SINE Alu -18 294 1 4407 162 30 58 chrX 118644339 118644403 -58329737 - L1MB5 LINE L1 -884 5290 5268 939 229 27 16 chrX 118644388 118644739 -58329401 - L1M4c LINE L1 -4063 2583 2226 * 3168 238 92 33 chrX 118644750 118646629 -58327511 - L1M4c LINE L1 -4504 2142 192 1923 99 4 0 chrX 118646665 118646918 -58327222 - AluSx SINE Alu -58 254 1 590 229 137 0 chrX 118648182 118648335 -58325805 - MIR SINE MIR -5 257 84 530 195 110 0 chrX 118648376 118648494 -58325646 + MIR3 SINE MIR 78 208 0 844 238 9 61 chrX 118648824 118649055 -58325085 - L2 LINE L2 -1 3312 3094 198 0 0 0 chrX 118649103 118649125 -58325015 + (T)n Simple_repeat Simple_repeat 1 22 0 529 274 113 25 chrX 118649167 118649266 -58324874 + MIR SINE MIR 23 112 -150 1879 191 39 142 chrX 118649266 118649398 -58324742 - MLT2F LTR ERVL 0 663 519 2370 83 3 3 chrX 118649398 118649700 -58324440 + AluSx SINE Alu 1 302 -10 1879 191 39 142 chrX 118649700 118650010 -58324130 - MLT2F LTR ERVL -144 519 325 2074 140 3 0 chrX 118650010 118650302 -58323838 + AluSx SINE Alu 1 293 -19 1879 191 39 142 chrX 118650302 118650597 -58323543 - MLT2F LTR ERVL -338 325 1 529 274 113 25 chrX 118650597 118650701 -58323439 + MIR SINE MIR 112 244 -18 407 210 24 40 chrX 118651027 118651151 -58322989 - MIR3 SINE MIR -1 207 86 27 73 0 0 chrX 118651536 118651591 -58322549 + AT_rich Low_complexity Low_complexity 1 55 0 200 43 64 21 chrX 118651594 118651641 -58322499 + (TA)n Simple_repeat Simple_repeat 1 49 0 470 231 58 23 chrX 118652075 118652248 -58321892 - L1ME1 LINE L1 0 6166 5988 2263 91 0 20 chrX 118654263 118654561 -58319579 + AluSg SINE Alu 1 292 -18 246 318 150 26 chrX 118655086 118655319 -58318821 - L3b LINE CR1 -119 1464 1203 520 278 51 6 chrX 118655444 118655620 -58318520 - MIR SINE MIR -3 259 76 195 146 0 0 chrX 118655712 118655753 -58318387 + (CA)n Simple_repeat Simple_repeat 2 42 0 543 267 58 17 chrX 118656482 118656654 -58317486 + MIR SINE MIR 37 215 -47 2323 101 7 0 chrX 118656925 118657231 -58316909 - AluSx SINE Alu -4 308 1 373 198 22 22 chrX 118657327 118657418 -58316722 + Charlie7 DNA MER1_type 1 91 -2521 499 184 193 9 chrX 118657419 118657456 -58316684 - FLAM_A SINE Alu -176 135 106 198 0 0 0 chrX 118657456 118657478 -58316662 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 499 184 193 9 chrX 118657478 118657554 -58316586 - FLAM_A SINE Alu -205 106 1 426 303 60 5 chrX 118657558 118657743 -58316397 + Charlie7 DNA MER1_type 130 324 -2288 2145 209 136 45 chrX 118657778 118658526 -58315614 + Charlie7 DNA MER1_type 1486 2347 -265 2468 53 3 7 chrX 118658526 118658826 -58315314 + AluY SINE Alu 1 299 -12 2145 209 136 45 chrX 118658826 118659060 -58315080 + Charlie7 DNA MER1_type 2347 2558 -54 2052 106 16 16 chrX 118659380 118659691 -58314449 + AluSx SINE Alu 1 311 -1 530 278 167 5 chrX 118659949 118660165 -58313975 + MIR SINE MIR 12 262 0 278 279 7 73 chrX 118660163 118660299 -58313841 + L2 LINE L2 3187 3313 0 * 5970 92 88 0 chrX 118660406 118660778 -58313362 - L1PA16 LINE L1 0 6166 5828 396 0 0 0 chrX 118660778 118660822 -58313318 + (TA)n Simple_repeat Simple_repeat 1 44 0 5970 92 88 0 chrX 118660822 118661122 -58313018 - L1PA16 LINE L1 -338 5828 5556 1805 161 18 3 chrX 118661122 118661408 -58312732 - AluJb SINE Alu -20 292 3 2129 151 0 3 chrX 118661413 118661724 -58312416 - AluJb SINE Alu -2 310 1 5970 92 88 0 chrX 118661724 118661968 -58312172 - L1PA16 LINE L1 -613 5553 5231 284 258 39 96 chrX 118662862 118663040 -58311100 + L2 LINE L2 3141 3308 -5 2210 129 0 3 chrX 118663765 118664076 -58310064 - AluSx SINE Alu -2 310 1 3256 160 35 11 chrX 118664256 118664913 -58309227 - L1 LINE L1 -1869 4459 3784 2050 147 0 13 chrX 118664913 118665219 -58308921 - AluSx SINE Alu -10 302 1 6710 193 39 19 chrX 118665220 118666869 -58307271 - L1 LINE L1 -2811 3517 1903 2399 80 26 0 chrX 118666869 118667171 -58306969 - AluSg SINE Alu 0 310 1 6710 193 39 19 chrX 118667171 118668964 -58305176 - L1 LINE L1 -4425 1903 1 945 205 0 54 chrX 118669107 118669211 -58304929 + MER45A DNA AcHobo 2 93 -1488 2107 157 0 0 chrX 118669211 118669505 -58304635 - AluSx SINE Alu -18 294 1 945 205 0 54 chrX 118669505 118669585 -58304555 + MER45A DNA AcHobo 93 176 -2 226 308 34 0 chrX 118670027 118670144 -58303996 + MER103 DNA DNA 1 121 -45 667 271 87 51 chrX 118670429 118670880 -58303260 + L1MC/D LINE L1 5357 5823 -1985 574 213 8 16 chrX 118671140 118671267 -58302873 + MER63 DNA MER1_type 2 753 -83 342 232 12 0 chrX 118671267 118671349 -58302791 + MER63 DNA MER1_type 978 1060 0 75 79 0 10 chrX 118672264 118672315 -58301825 + AT_rich Low_complexity Low_complexity 1 51 -149 261 0 0 0 chrX 118672315 118672344 -58301796 + (TA)n Simple_repeat Simple_repeat 1 29 0 2242 114 0 3 chrX 118672344 118672643 -58301497 - AluSx SINE Alu -13 299 2 75 79 0 10 chrX 118672643 118672792 -58301348 + AT_rich Low_complexity Low_complexity 49 200 0 21 36 0 0 chrX 118672902 118672930 -58301210 + AT_rich Low_complexity Low_complexity 1 28 0 2017 117 7 4 chrX 118673014 118673295 -58300845 - AluSx SINE Alu -16 296 15 234 164 0 0 chrX 118674289 118674344 -58299796 + (ATG)n Simple_repeat Simple_repeat 2 56 0 1713 158 38 0 chrX 118675048 118675314 -58298826 + AluJo SINE Alu 1 276 -36 180 0 0 0 chrX 118675322 118675342 -58298798 + (CAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chrX 118675551 118675572 -58298568 + AT_rich Low_complexity Low_complexity 1 21 0 658 270 0 17 chrX 118675574 118675752 -58298388 + MER5B DNA MER1_type 4 178 0 251 268 0 27 chrX 118675779 118675891 -58298249 - MLT1K LTR MaLR -12 576 468 2312 113 0 0 chrX 118676369 118676671 -58297469 - AluSq SINE Alu -11 302 1 615 203 8 0 chrX 118676737 118676865 -58297275 - MER94 DNA DNA -5 129 1 735 280 34 48 chrX 118676865 118677244 -58296896 - L1ME LINE L1 -427 5694 5321 1954 130 7 4 chrX 118677350 118677626 -58296514 - AluSx SINE Alu -15 297 21 1707 175 7 10 chrX 118677772 118678063 -58296077 - AluJo SINE Alu -9 303 14 364 291 34 59 chrX 118678422 118678659 -58295481 - L1ME LINE L1 -1663 4483 4253 999 136 0 0 chrX 118678667 118678865 -58295275 - AluSg/x SINE Alu 0 333 136 1244 104 0 0 chrX 118679042 118679205 -58294935 - AluSg/x SINE Alu -14 296 134 325 308 39 26 chrX 118679321 118679555 -58294585 - L1ME LINE L1 -2210 3936 3700 361 309 54 109 chrX 118679684 118680334 -58293806 + L2 LINE L2 1819 2432 -882 356 230 96 52 chrX 118680422 118680557 -58293583 - Charlie8 DNA MER1_type -2205 212 72 2105 126 20 0 chrX 118680704 118681005 -58293135 - AluSx SINE Alu -5 307 1 3580 111 22 43 chrX 118681107 118681490 -58292650 - L1MA5A LINE L1 -8 6289 5900 1749 132 90 39 chrX 118681490 118681845 -58292295 - THE1C LTR MaLR -2 373 1 3580 111 22 43 chrX 118681845 118681932 -58292208 - L1MA5A LINE L1 -397 5900 5813 2038 158 0 0 chrX 118681932 118682235 -58291905 - AluJb SINE Alu -9 303 1 3580 111 22 43 chrX 118682235 118682394 -58291746 - L1MA5A LINE L1 -484 5813 5672 1260 220 86 40 chrX 118682401 118682806 -58291334 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chrX 118683465 118683606 -58290534 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chrX 118683717 118683753 -58290387 + (TA)n Simple_repeat Simple_repeat 2 37 0 942 268 36 3 chrX 118683787 118684119 -58290021 - L1ME3A LINE L1 -220 5950 5608 309 259 185 52 chrX 118684243 118684373 -58289767 - MLT1J LTR MaLR -43 468 357 1318 230 72 3 chrX 118684373 118684691 -58289449 + MER58B DNA MER1_type 1 340 -1 309 259 185 52 chrX 118684691 118684846 -58289294 - MLT1J LTR MaLR -154 357 145 2349 112 123 5 chrX 118684912 118685295 -58288845 + MSTA LTR MaLR 1 428 0 297 0 0 0 chrX 118685297 118685330 -58288810 + (CA)n Simple_repeat Simple_repeat 2 34 0 322 213 71 49 chrX 118685352 118685535 -58288605 - HAL1 LINE L1 -1411 1096 910 485 213 34 53 chrX 118685538 118685745 -58288395 - L1ME3A LINE L1 -5 6165 5963 1022 235 72 50 chrX 118685797 118686253 -58287887 - L1MC5 LINE L1 -430 7531 7066 1062 232 34 13 chrX 118686293 118686530 -58287610 + MLT2E LTR ERVL 18 259 -369 436 122 61 0 chrX 118686564 118686646 -58287494 - MER53 DNA DNA -1 188 102 286 295 29 14 chrX 118686648 118686787 -58287353 + (TA)n Simple_repeat Simple_repeat 2 142 0 553 236 25 31 chrX 118686902 118686981 -58287159 + MLT2E LTR ERVL 469 547 -81 1061 213 97 5 chrX 118686981 118687197 -58286943 - MER8 DNA MER2_type -3 236 1 553 236 25 31 chrX 118687197 118687278 -58286862 + MLT2E LTR ERVL 547 628 0 1746 166 23 19 chrX 118687463 118687667 -58286473 - AluJb SINE Alu -4 308 101 1869 140 161 11 chrX 118687667 118688039 -58286101 + MSTA LTR MaLR 1 428 0 1746 166 23 19 chrX 118688039 118688141 -58285999 - AluJb SINE Alu -211 101 1 855 279 38 55 chrX 118689661 118690027 -58284113 + L2 LINE L2 2954 3313 0 1931 147 0 35 chrX 118690314 118690627 -58283513 + AluSx SINE Alu 1 302 -10 2256 132 0 0 chrX 118690726 118691036 -58283104 + AluSx SINE Alu 1 310 -2 377 70 23 105 chrX 118691121 118691207 -58282933 - MER53 DNA DNA -18 171 93 307 289 13 0 chrX 118691246 118691322 -58282818 - L3 LINE CR1 -1070 507 431 433 92 66 13 chrX 118691335 118691411 -58282729 - MADE1 DNA Mariner 0 80 1 311 138 207 23 chrX 118691587 118691674 -58282466 - MER103 DNA DNA -6 160 58 25 31 0 0 chrX 118692279 118692311 -58281829 + AT_rich Low_complexity Low_complexity 1 32 0 444 56 83 14 chrX 118692940 118693012 -58281128 - MADE1 DNA Mariner 0 80 4 213 245 0 19 chrX 118693118 118693171 -58280969 + L2 LINE L2 3221 3272 0 1000 195 32 41 chrX 118693284 118693505 -58280635 - MER20 DNA MER1_type 0 219 1 2984 76 19 2 chrX 118693510 118693920 -58280220 + L1PA14 LINE L1 5742 6158 -3 1720 157 88 0 chrX 118694092 118694423 -58279717 + L1MB5 LINE L1 5741 6100 -74 363 158 40 0 chrX 118694488 118694564 -58279576 + L1MB5 LINE L1 6088 6166 -8 305 266 128 0 chrX 118694818 118694912 -58279228 + MIR SINE MIR 157 262 0 2108 110 34 7 chrX 118695204 118695495 -58278645 + AluSx SINE Alu 1 299 -13 234 315 0 0 chrX 118698110 118698164 -58275976 + L2 LINE L2 3132 3185 -87 647 280 277 6 chrX 118698276 118698594 -58275546 - L2 LINE L2 -2 3270 2867 186 43 0 0 chrX 118698764 118698787 -58275353 + (CAA)n Simple_repeat Simple_repeat 1 23 0 297 0 0 0 chrX 118698788 118698821 -58275319 + (CA)n Simple_repeat Simple_repeat 1 33 0 374 206 0 0 chrX 118699186 118699259 -58274881 - HAL1 LINE L1 -619 1888 1816 726 256 84 0 chrX 118699301 118699492 -58274648 + MLT1J LTR MaLR 3 209 -302 1783 185 97 8 chrX 118699677 118700165 -58273975 - L1MC4 LINE L1 -2 7807 7274 9413 161 25 38 chrX 118700195 118702884 -58271256 + L1PA14 LINE L1 3538 6159 -2 3517 177 41 8 chrX 118702884 118703640 -58270500 - L1MB5 LINE L1 -9 6663 5883 581 208 20 10 chrX 118703645 118703842 -58270298 - L1MB5 LINE L1 -2827 3817 3619 2295 221 32 30 chrX 118703849 118704679 -58269461 - L1MB5 LINE L1 -3254 3390 2564 2304 103 0 0 chrX 118704679 118704979 -58269161 - AluSx SINE Alu -12 300 1 2295 221 32 30 chrX 118704979 118705163 -58268977 - L1MB5 LINE L1 -4080 2564 2382 200 35 35 0 chrX 118705163 118705192 -58268948 + (TA)n Simple_repeat Simple_repeat 2 31 0 2295 221 32 30 chrX 118705192 118705369 -58268771 - L1MB5 LINE L1 -4262 2382 2207 360 165 0 0 chrX 118705369 118705448 -58268692 - L1MA9 LINE L1 -5 6307 6229 2295 221 32 30 chrX 118705448 118706002 -58268138 - L1MB5 LINE L1 -4437 2207 1546 297 0 0 0 chrX 118706053 118706086 -58268054 + (TTA)n Simple_repeat Simple_repeat 2 34 0 887 124 0 0 chrX 118706089 118706210 -58267930 - AluJb SINE Alu -191 121 1 1589 224 6 32 chrX 118706219 118706715 -58267425 - L1MB5 LINE L1 -4985 1557 1075 722 153 0 46 chrX 118706718 118706849 -58267291 - FLAM_C SINE Alu -6 137 13 2277 267 52 31 chrX 118706856 118707900 -58266240 - L1MB5 LINE L1 -5475 1067 2 2175 121 7 0 chrX 118707917 118708222 -58265918 - AluSg SINE Alu -1 309 3 288 53 0 0 chrX 118708548 118708586 -58265554 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 372 262 57 49 chrX 118709039 118709161 -58264979 - L2 LINE L2 -10 3262 3140 374 282 6 80 chrX 118710657 118710820 -58263320 - L2 LINE L2 -189 3083 2933 993 157 0 0 chrX 118711066 118711213 -58262927 + FRAM SINE Alu 1 146 -30 2043 184 75 11 chrX 118711371 118711848 -58262292 + Charlie4a DNA MER1_type 1 508 0 1211 77 6 0 chrX 118712327 118712495 -58261645 - L1PA6 LINE L1 -149 6005 5837 240 100 0 0 chrX 118713051 118713091 -58261049 + (TAAAAA)n Simple_repeat Simple_repeat 3 42 0 7034 45 22 0 chrX 118713174 118714246 -58259894 - L1PA6 LINE L1 -2 6152 5076 297 182 26 65 chrX 118714279 118714356 -58259784 + MIR SINE MIR 183 256 -6 228 67 0 0 chrX 118714356 118714386 -58259754 + (CAT)n Simple_repeat Simple_repeat 2 31 0 508 294 19 10 chrX 118814933 118815126 -58159014 + MIR SINE MIR 6 207 -55 704 223 189 0 chrX 118816152 118816358 -58157782 + MIR SINE MIR 2 246 -16 221 83 28 0 chrX 118816359 118816395 -58157745 + (TTA)n Simple_repeat Simple_repeat 1 37 0 596 133 0 0 chrX 118817948 118818031 -58156109 + AluS SINE Alu 2 84 -229 2163 98 9 44 chrX 118818923 118819238 -58154902 + AluSx SINE Alu 1 304 -8 1053 210 139 50 chrX 118819238 118819487 -58154653 - LTR50 LTR ERVL -11 784 559 1582 78 0 0 chrX 118819487 118819680 -58154460 + AluY SINE Alu 106 298 -13 1053 210 139 50 chrX 118819680 118820021 -58154119 - LTR50 LTR ERVL -236 559 1 618 179 8 8 chrX 118821908 118822042 -58152098 - Charlie1 DNA MER1_type -6 2755 2622 552 225 116 0 chrX 118822064 118822193 -58151947 - Charlie1 DNA MER1_type -2600 161 18 317 278 46 64 chrX 118822204 118822377 -58151763 - MER104 DNA Tc2 0 180 11 201 354 197 0 chrX 118822545 118822692 -58151448 - L2 LINE L2 -5 3267 3092 213 94 0 0 chrX 118822854 118822886 -58151254 + (TTTAA)n Simple_repeat Simple_repeat 3 34 0 763 260 97 114 chrX 118823009 118823449 -58150691 - MLT1J LTR MaLR -12 499 67 2016 107 0 57 chrX 118823449 118823784 -58150356 + AluSx SINE Alu 1 318 0 763 260 97 114 chrX 118823784 118823850 -58150290 - MLT1J LTR MaLR -444 67 1 231 125 0 0 chrX 118824068 118824108 -58150032 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 285 308 96 29 chrX 118825130 118825234 -58148906 + L2 LINE L2 3193 3303 -10 657 351 8 12 chrX 118825595 118825846 -58148294 - MIR SINE MIR 0 262 13 236 277 0 0 chrX 118825947 118825994 -58148146 + L2 LINE L2 3150 3196 -76 352 321 50 21 chrX 118826065 118826205 -58147935 + L2 LINE L2 2624 2767 -547 966 184 11 23 chrX 118826251 118826425 -58147715 + MER20 DNA MER1_type 1 172 -47 272 310 142 61 chrX 118826547 118826857 -58147283 + L2 LINE L2 2918 3252 -20 185 194 0 0 chrX 118827128 118827159 -58146981 + L2 LINE L2 3222 3252 -20 479 240 0 0 chrX 118827265 118827369 -58146771 - MER113 DNA MER1_type? -415 106 3 201 195 24 0 chrX 118827462 118827503 -58146637 - L2 LINE L2 -18 3254 3213 * 660 234 16 47 chrX 118827474 118827666 -58146474 - MIR SINE MIR -25 237 52 180 243 0 0 chrX 118830086 118830123 -58144017 + L2 LINE L2 3203 3239 -33 450 0 0 0 chrX 118830129 118830179 -58143961 + (CA)n Simple_repeat Simple_repeat 2 51 0 615 349 15 8 chrX 118830180 118830444 -58143696 + L2 LINE L2 2509 2774 -540 1129 185 86 26 chrX 118830473 118830760 -58143380 - MSTC LTR MaLR 0 428 86 4195 121 114 10 chrX 118830760 118831143 -58142997 + L1MA5 LINE L1 5412 5754 -546 2960 118 31 5 chrX 118831143 118831559 -58142581 - MSTA LTR MaLR -1 427 1 4195 121 114 10 chrX 118831559 118831886 -58142254 + L1MA5 LINE L1 5754 6196 -104 455 114 0 91 chrX 118831886 118831974 -58142166 - MSTC LTR MaLR -316 80 1 2166 177 31 16 chrX 118831979 118832363 -58141777 - MLT1B LTR MaLR 0 390 1 504 371 24 62 chrX 118832364 118832817 -58141323 + L2 LINE L2 2832 3267 -5 927 156 52 7 chrX 118833128 118833282 -58140858 - MER5A DNA MER1_type -27 162 2 273 306 101 35 chrX 118834014 118834213 -58139927 + MIR3 SINE MIR 4 215 -47 561 266 170 5 chrX 118837104 118837292 -58136848 - MIR SINE MIR -26 236 18 4681 220 77 52 chrX 118837483 118838663 -58135477 - L2 LINE L2 0 3313 2164 2365 91 0 7 chrX 118838663 118838971 -58135169 + AluSq SINE Alu 1 306 -7 4681 220 77 52 chrX 118838971 118839070 -58135070 - L2 LINE L2 -1149 2164 2069 1703 194 27 43 chrX 118839070 118839441 -58134699 - MLT1A1 LTR MaLR 0 365 1 4681 220 77 52 chrX 118839441 118839613 -58134527 - L2 LINE L2 -1244 2069 1903 2698 183 21 0 chrX 118839613 118840083 -58134057 + L1MB7 LINE L1 5688 6167 -17 4681 220 77 52 chrX 118840083 118840307 -58133833 - L2 LINE L2 -1410 1903 1600 319 189 70 70 chrX 118840550 118840636 -58133504 - MIR SINE MIR -64 144 58 230 0 33 0 chrX 118842050 118842080 -58132060 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 285 253 110 91 chrX 118842756 118842910 -58131230 - L2 LINE L2 0 3272 3116 241 220 68 76 chrX 118842928 118843046 -58131094 + L2 LINE L2 2586 2702 -612 192 312 48 80 chrX 118843803 118843928 -58130212 + L2 LINE L2 3127 3247 -25 372 152 0 0 chrX 118844800 118844866 -58129274 + (CA)n Simple_repeat Simple_repeat 2 67 0 11700 25 6 1 chrX 118845395 118846862 -58127278 - L1P LINE L1 -743 5403 3929 5545 31 0 0 chrX 118846862 118847505 -58126635 + L1PA4 LINE L1 5506 6154 -1 213 39 0 0 chrX 118847518 118847544 -58126596 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 2036 114 7 7 chrX 118847731 118848020 -58126120 + AluSx SINE Alu 1 289 -23 22 0 0 0 chrX 118848020 118848042 -58126098 + AT_rich Low_complexity Low_complexity 1 22 0 218 204 19 19 chrX 118850301 118850355 -58123785 + GA-rich Low_complexity Low_complexity 2 55 0 315 0 0 0 chrX 118851187 118851222 -58122918 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1624 171 164 36 chrX 118852023 118852498 -58121642 - LTR10A LTR ERV1 -61 548 13 2593 55 0 3 chrX 118852625 118852936 -58121204 - AluY SINE Alu -1 310 1 508 238 42 35 chrX 118854004 118854147 -58119993 - MIR3 SINE MIR -61 147 4 1718 151 0 18 chrX 118856218 118856490 -58117650 - AluJo SINE Alu -45 267 1 753 213 198 15 chrX 118856843 118857045 -58117095 - MIR SINE MIR -6 256 18 545 219 73 6 chrX 118857329 118857493 -58116647 + L1ME1 LINE L1 5987 6161 -5 186 103 0 0 chrX 118857526 118857555 -58116585 + (A)n Simple_repeat Simple_repeat 1 29 0 2203 89 14 0 chrX 118857937 118858228 -58115912 - AluY SINE Alu -16 295 1 2298 93 10 0 chrX 118858282 118858584 -58115556 + AluSg SINE Alu 1 305 -5 315 224 0 0 chrX 118858806 118858882 -58115258 - MER116 DNA Mariner -3 77 2 2345 80 3 7 chrX 118859571 118859870 -58114270 + AluSq SINE Alu 1 298 -15 1020 289 96 28 chrX 118860846 118861594 -58112546 + L1ME4a LINE L1 5310 6108 -13 310 367 14 14 chrX 118862194 118862333 -58111807 - MIR SINE MIR -48 214 76 356 152 89 0 chrX 118862461 118862540 -58111600 + L1MD3 LINE L1 7901 7986 -9 185 136 0 23 chrX 118862567 118862611 -58111529 + (CTAAA)n Simple_repeat Simple_repeat 3 45 0 980 18 0 0 chrX 118865716 118865830 -58108310 + L1PA3 LINE L1 6040 6153 -2 306 106 0 0 chrX 118866526 118866573 -58107567 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 23 33 0 0 chrX 118867257 118867287 -58106853 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chrX 118868770 118868791 -58105349 + AT_rich Low_complexity Low_complexity 1 21 0 984 194 0 0 chrX 118869296 118869466 -58104674 + FRAM SINE Alu 1 170 -6 1101 295 18 91 chrX 118869466 118870041 -58104099 + L2 LINE L2 2740 3272 0 21 82 0 0 chrX 118871084 118871133 -58103007 + AT_rich Low_complexity Low_complexity 1 49 0 1962 97 56 15 chrX 118872930 118873199 -58100941 + AluSx SINE Alu 1 280 -32 333 0 0 0 chrX 118873199 118873236 -58100904 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 183 283 75 0 chrX 118873771 118873824 -58100316 + L3b LINE CR1 1401 1457 -126 271 218 0 26 chrX 118874289 118874367 -58099773 + L1MC5 LINE L1 7832 7907 -54 217 173 115 19 chrX 118874585 118874637 -58099503 + L3 LINE CR1 1516 1572 -5 23 33 0 0 chrX 118879030 118879060 -58095080 + AT_rich Low_complexity Low_complexity 1 30 0 368 96 60 0 chrX 118879367 118879450 -58094690 + A-rich Low_complexity Low_complexity 3 90 0 372 22 0 0 chrX 118880927 118880972 -58093168 + (TG)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chrX 118880971 118880997 -58093143 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 324 0 0 0 chrX 118880996 118881032 -58093108 + (GA)n Simple_repeat Simple_repeat 2 37 0 313 296 96 22 chrX 118881344 118881479 -58092661 - MIR SINE MIR -59 203 60 1823 61 8 8 chrX 118881482 118881727 -58092413 + L1PA8 LINE L1 5926 6170 -2 21 0 0 0 chrX 118883203 118883224 -58090916 + AT_rich Low_complexity Low_complexity 1 21 0 227 191 22 45 chrX 118883610 118883699 -58090441 + T-rich Low_complexity Low_complexity 4 90 0 207 0 0 0 chrX 118886362 118886385 -58087755 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 395 218 26 55 chrX 118887465 118887589 -58086551 - MIR SINE MIR -63 145 33 1887 132 35 10 chrX 118887734 118888023 -58086117 + AluSx SINE Alu 1 296 -16 399 21 0 0 chrX 118889254 118889302 -58084838 + (TG)n Simple_repeat Simple_repeat 2 49 0 597 267 19 62 chrX 118889673 118889883 -58084257 - MIR SINE MIR -14 248 48 208 186 45 73 chrX 118890845 118890967 -58083173 + (TATAA)n Simple_repeat Simple_repeat 3 127 -47 7220 103 31 52 chrX 118890967 118891419 -58082721 - Tigger3b DNA MER2_type -1797 1231 771 1700 95 8 33 chrX 118891419 118891662 -58082478 + AluY SINE Alu 57 293 -18 7220 103 31 52 chrX 118891662 118892254 -58081886 - Tigger3b DNA MER2_type -2257 771 215 2342 117 10 0 chrX 118892254 118892563 -58081577 - AluSx SINE Alu 0 312 1 7220 103 31 52 chrX 118892563 118892774 -58081366 - Tigger3b DNA MER2_type -2813 215 1 208 186 45 73 chrX 118892774 118892828 -58081312 + (TATAA)n Simple_repeat Simple_repeat 127 174 0 1137 212 85 53 chrX 118893055 118893433 -58080707 - MLT1B LTR MaLR 0 390 1 3225 214 36 74 chrX 118893434 118894739 -58079401 - MLT1B-int LTR MaLR -1 1370 1 1497 204 60 11 chrX 118894739 118895091 -58079049 - MLT1B LTR MaLR 0 390 22 565 323 41 5 chrX 118895112 118895307 -58078833 - MIR SINE MIR -59 203 2 1441 167 69 66 chrX 118895550 118895855 -58078285 - AluJo SINE Alu 0 312 1 2201 104 0 0 chrX 118895982 118896262 -58077878 + AluSq SINE Alu 14 293 -20 645 223 50 71 chrX 118897241 118897423 -58076717 + MER5A DNA MER1_type 1 189 0 1371 121 17 0 chrX 118897981 118898221 -58075919 + L1MA8 LINE L1 5089 5332 -814 988 107 0 0 chrX 118898221 118898361 -58075779 + AluY SINE Alu 166 305 -6 5508 117 27 17 chrX 118898361 118899320 -58074820 + L1MA8 LINE L1 5323 6291 0 2076 94 3 47 chrX 118899416 118899741 -58074399 + AluSg SINE Alu 1 312 0 3566 24 21 0 chrX 118899834 118900257 -58073883 + L1PA5 LINE L1 5718 6149 -5 26 0 0 0 chrX 118900269 118900295 -58073845 + AT_rich Low_complexity Low_complexity 1 26 0 258 275 24 4 chrX 118901118 118901303 -58072837 - MARNA DNA Mariner -39 547 290 948 217 4 61 chrX 118901422 118901685 -58072455 - MIR SINE MIR -13 249 2 25 0 0 0 chrX 118902501 118902526 -58071614 + AT_rich Low_complexity Low_complexity 1 25 0 481 279 93 57 chrX 118902683 118903016 -58071124 + L1ME4a LINE L1 4254 4598 -1548 1756 133 47 26 chrX 118903035 118903374 -58070766 - L1MA4A LINE L1 -12 6291 5946 1782 161 28 0 chrX 118903376 118903698 -58070442 + L1MA4A LINE L1 5625 5955 -348 624 292 142 30 chrX 118903768 118904268 -58069872 + L1ME4a LINE L1 4731 5286 -860 779 287 20 32 chrX 118904594 118904942 -58069198 + L1ME4a LINE L1 5485 5828 -293 500 78 108 0 chrX 118905061 118905386 -58068754 + (TA)n Simple_repeat Simple_repeat 1 359 0 272 158 57 13 chrX 118905404 118905562 -58068578 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 266 100 33 33 chrX 118905567 118905627 -58068513 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 676 36 74 23 chrX 118905628 118906025 -58068115 + (TA)n Simple_repeat Simple_repeat 1 417 0 326 256 60 0 chrX 118906156 118906273 -58067867 + L1ME4a LINE L1 5975 6098 -23 358 225 0 25 chrX 118907218 118907298 -58066842 - MIR SINE MIR -98 164 87 808 266 207 32 chrX 118907362 118907738 -58066402 - L2 LINE L2 -1 3312 2871 752 241 58 22 chrX 118908412 118908636 -58065504 - MIR SINE MIR -3 259 28 531 169 131 31 chrX 118911997 118912127 -58062013 + L2 LINE L2 3160 3302 -11 180 0 0 0 chrX 118912129 118912149 -58061991 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 243 61 0 0 chrX 118912192 118912225 -58061915 + (CA)n Simple_repeat Simple_repeat 2 34 0 448 206 65 0 chrX 118912332 118912424 -58061716 + MIR3 SINE MIR 98 195 -13 581 269 81 7 chrX 118913188 118913337 -58060803 - L2 LINE L2 -1 3271 3112 1064 280 4 0 chrX 118913585 118913842 -58060298 - MIR SINE MIR -3 259 2 286 333 39 0 chrX 118914381 118914483 -58059657 + L2 LINE L2 3141 3246 -26 312 27 0 0 chrX 118915989 118916026 -58058114 + (TAA)n Simple_repeat Simple_repeat 1 37 0 29 0 0 0 chrX 118917063 118917092 -58057048 + AT_rich Low_complexity Low_complexity 1 29 0 2157 129 0 0 chrX 118917362 118917656 -58056484 - AluSx SINE Alu -16 296 3 200 259 63 91 chrX 118917895 118918038 -58056102 + MIR SINE MIR 124 262 0 294 370 0 0 chrX 118918117 118918217 -58055923 - MIR SINE MIR -140 122 23 25 0 0 0 chrX 118920968 118920993 -58053147 + AT_rich Low_complexity Low_complexity 1 25 0 312 271 132 14 chrX 118923967 118924111 -58050029 + L1M4c LINE L1 1704 1864 -4520 2320 89 7 3 chrX 118924114 118924417 -58049723 - AluSq SINE Alu -9 304 1 1545 105 5 27 chrX 118924449 118924668 -58049472 + AluSc SINE Alu 1 214 -95 1167 298 55 61 chrX 118924712 118925487 -58048653 - L1M4 LINE L1 -5758 784 14 261 321 278 5 chrX 118925550 118925762 -58048378 + L2 LINE L2 2985 3254 -18 632 227 57 46 chrX 118928457 118928651 -58045489 - MIR SINE MIR -1 261 66 292 299 139 16 chrX 118928987 118929174 -58044966 - L1MC/D LINE L1 -2058 5684 5475 328 323 68 31 chrX 118929303 118929409 -58044731 + MER5A DNA MER1_type 18 133 -56 2301 110 0 7 chrX 118929409 118929710 -58044430 + AluSq SINE Alu 1 299 -14 328 323 68 31 chrX 118929710 118929764 -58044376 + MER5A DNA MER1_type 133 184 -5 306 278 104 20 chrX 118930357 118930632 -58043508 - L1MC/D LINE L1 -2694 3386 3082 1902 124 60 0 chrX 118930632 118930942 -58043198 - AluSx SINE Alu 0 326 1 306 278 104 20 chrX 118930942 118930964 -58043176 - L1MC/D LINE L1 -2998 3082 3063 23 0 0 0 chrX 118930976 118930999 -58043141 + AT_rich Low_complexity Low_complexity 1 23 0 978 166 11 0 chrX 118931013 118931200 -58042940 - L1PB1 LINE L1 -4 6147 5959 301 158 0 0 chrX 118931465 118931522 -58042618 + MER92C LTR ERV1 498 554 0 920 254 106 5 chrX 118931524 118931969 -58042171 - L1MC/D LINE L1 -3007 3073 2584 589 146 62 7 chrX 118932000 118932144 -58041996 + L1MC3 LINE L1 6934 7085 -700 280 301 0 10 chrX 118932144 118932247 -58041893 + MLT1F1 LTR MaLR 24 125 -442 2835 130 50 60 chrX 118932247 118932845 -58041295 + L1MD3 LINE L1 7404 7995 0 476 262 20 48 chrX 118932887 118933135 -58041005 - L1MC/D LINE L1 -3569 2511 2271 325 302 17 9 chrX 118933199 118933315 -58040825 - L1MC/D LINE L1 -5949 121 5 245 336 62 0 chrX 118933807 118933935 -58040205 + HAL1b LINE L1 59 194 -1154 2339 232 65 20 chrX 118933947 118934978 -58039162 + L1ME3A LINE L1 4868 5962 -200 1538 198 125 3 chrX 118934978 118935331 -58038809 - MSTD LTR MaLR 0 396 1 971 243 107 39 chrX 118935347 118935816 -58038324 + MLT1H LTR MaLR 9 549 0 578 211 28 106 chrX 118935817 118936035 -58038105 + L1ME3A LINE L1 5959 6159 -11 1792 194 110 19 chrX 118936079 118936542 -58037598 + MLT1D LTR MaLR 1 505 0 303 196 43 0 chrX 118936577 118936669 -58037471 - L1MB3 LINE L1 -1 6182 6087 8813 190 53 22 chrX 118936676 118938364 -58035776 - L1MA4 LINE L1 -281 6201 4566 2151 144 0 6 chrX 118938364 118938676 -58035464 + AluSx SINE Alu 1 310 -2 8813 190 53 22 chrX 118938676 118939414 -58034726 - L1MA4 LINE L1 -1916 4566 3852 2032 148 0 13 chrX 118939414 118939718 -58034422 - AluSx SINE Alu -12 300 1 8813 190 53 22 chrX 118939718 118941367 -58032773 - L1MA4 LINE L1 -2630 3852 2255 2399 80 26 0 chrX 118941367 118941669 -58032471 - AluSg SINE Alu 0 310 1 8813 190 53 22 chrX 118941669 118943462 -58030678 - L1MA4 LINE L1 -4227 2255 1 945 205 0 54 chrX 118943605 118943709 -58030431 + MER45A DNA AcHobo 2 93 -1488 2107 157 0 0 chrX 118943709 118944003 -58030137 - AluSx SINE Alu -18 294 1 945 205 0 54 chrX 118944003 118944083 -58030057 + MER45A DNA AcHobo 93 176 -2 226 308 34 0 chrX 118944525 118944642 -58029498 + MER103 DNA DNA 1 121 -45 228 67 0 0 chrX 118944946 118944976 -58029164 + (ATG)n Simple_repeat Simple_repeat 2 31 0 298 182 26 65 chrX 118944976 118945053 -58029087 - MIR SINE MIR -6 256 183 7130 42 10 7 chrX 118945086 118946160 -58027980 + L1PA6 LINE L1 5076 6152 -2 240 100 0 0 chrX 118946243 118946283 -58027857 + (TTTTTA)n Simple_repeat Simple_repeat 3 42 0 1273 77 6 0 chrX 118946839 118947007 -58027133 + L1PA6 LINE L1 5837 6005 -149 2090 184 75 11 chrX 118947486 118947963 -58026177 - Charlie4a DNA MER1_type 0 508 1 974 164 0 0 chrX 118948121 118948267 -58025873 - FRAM SINE Alu -30 146 1 371 282 6 80 chrX 118948514 118948677 -58025463 + L2 LINE L2 2933 3083 -189 699 341 109 47 chrX 118951820 118952824 -58021316 - L2 LINE L2 -16 3256 2181 198 234 143 26 chrX 118953194 118953271 -58020869 - MIR SINE MIR -64 198 113 5173 29 0 0 chrX 118954457 118955075 -58019065 - L1PA3 LINE L1 -1102 5044 4427 7795 16 0 0 chrX 118955075 118956235 -58017905 + L1PA3 LINE L1 5014 6171 0 26 0 0 0 chrX 118957311 118957337 -58016803 + AT_rich Low_complexity Low_complexity 1 26 0 241 250 0 59 chrX 118957763 118957831 -58016309 - Charlie4 DNA MER1_type -6 1955 1892 827 295 102 36 chrX 118959386 118959779 -58014361 - L3 LINE CR1 -6 1571 1153 264 373 0 40 chrX 118959851 118960001 -58014139 - L3 LINE CR1 -1113 464 321 1417 194 82 1 chrX 118961059 118961377 -58012763 + L1MB7 LINE L1 5840 6182 -2 602 286 22 32 chrX 118963063 118963248 -58010892 - MER5A DNA MER1_type 0 189 7 220 335 62 39 chrX 118964929 118965108 -58009032 + MIR SINE MIR 54 236 -26 332 304 107 0 chrX 118965765 118965877 -58008263 - L2 LINE L2 -16 3256 3133 3631 104 135 132 chrX 118965898 118966287 -58007853 + L1MC3 LINE L1 6705 7091 -694 352 286 0 0 chrX 118966287 118966378 -58007762 + MLT1F1 LTR MaLR 35 125 -442 3631 104 135 132 chrX 118966378 118966809 -58007331 + L1MC3 LINE L1 7091 7618 -167 568 325 16 16 chrX 118966879 118967073 -58007067 + L2 LINE L2 3075 3268 -4 345 326 61 28 chrX 118967111 118967292 -58006848 - L2 LINE L2 -698 2616 2430 218 361 34 78 chrX 118967292 118967561 -58006579 - L2 LINE L2 -39 3233 2977 218 309 201 7 chrX 118967698 118967847 -58006293 - L2 LINE L2 -698 2616 2439 345 253 32 100 chrX 118968297 118968487 -58005653 - L2 LINE L2 -881 2433 2257 35 0 0 0 chrX 118969000 118969035 -58005105 + AT_rich Low_complexity Low_complexity 1 35 0 240 86 0 0 chrX 118969875 118969910 -58004230 + (TG)n Simple_repeat Simple_repeat 2 36 0 183 80 0 0 chrX 118969913 118969938 -58004202 + (CATG)n Simple_repeat Simple_repeat 3 27 0 621 238 111 11 chrX 118969991 118970252 -58003888 - L1ME4a LINE L1 0 6121 5835 201 255 0 0 chrX 118970806 118970853 -58003287 + L2 LINE L2 3267 3313 0 212 59 29 0 chrX 118972349 118972383 -58001757 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 325 235 176 10 chrX 118972542 118972644 -58001496 + MIR3 SINE MIR 69 187 -21 469 273 58 19 chrX 118972652 118972806 -58001334 - MIR SINE MIR 0 262 103 294 60 90 119 chrX 118972807 118972874 -58001266 + L1PA12 LINE L1 6099 6163 -2 186 309 0 109 chrX 118972875 118972957 -58001183 - MIR SINE MIR -164 98 29 1981 81 8 0 chrX 118972957 118973215 -58000925 - AluSg SINE Alu -6 304 45 186 309 0 109 chrX 118973215 118973242 -58000898 - MIR SINE MIR -233 29 1 484 345 122 16 chrX 118974999 118975443 -57998697 - L2 LINE L2 -1216 2098 1608 640 302 72 18 chrX 118976288 118976510 -57997630 + MIR SINE MIR 2 235 -27 199 348 21 80 chrX 118976597 118976784 -57997356 + L3 LINE CR1 1400 1575 -2 243 0 0 0 chrX 118978373 118978400 -57995740 + (T)n Simple_repeat Simple_repeat 1 27 0 781 194 5 43 chrX 118978635 118978821 -57995319 - MER97b DNA MER1_type? -874 179 1 227 297 0 0 chrX 118978830 118978894 -57995246 + L1ME4a LINE L1 5850 5913 -208 235 111 79 0 chrX 118978922 118978985 -57995155 + (TA)n Simple_repeat Simple_repeat 2 69 0 261 148 45 51 chrX 118978997 118979173 -57994967 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 391 0 114 42 chrX 118979176 118979342 -57994798 + (TA)n Simple_repeat Simple_repeat 1 178 0 316 0 84 79 chrX 118979368 118979546 -57994594 + (TA)n Simple_repeat Simple_repeat 2 180 0 333 284 5 86 chrX 118979548 118979745 -57994395 + L1ME4a LINE L1 5891 6071 -50 25 31 0 0 chrX 118980070 118980102 -57994038 + AT_rich Low_complexity Low_complexity 1 32 0 410 270 101 17 chrX 118980275 118980907 -57993233 - L1ME4a LINE L1 -107 6014 5314 421 179 113 73 chrX 118981266 118981417 -57992723 + MIR SINE MIR 92 248 -14 275 288 158 0 chrX 118981703 118981842 -57992298 + L1MC/D LINE L1 5679 5839 -1969 549 152 80 0 chrX 118981928 118982040 -57992100 - L1MB3 LINE L1 -3 6180 6060 2388 74 0 7 chrX 118982258 118982557 -57991583 + AluSg SINE Alu 4 300 -10 1961 104 0 0 chrX 118982703 118982952 -57991188 + AluSx SINE Alu 32 280 -32 207 0 0 0 chrX 118982955 118982978 -57991162 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chrX 118983037 118983060 -57991080 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chrX 118984623 118984659 -57989481 + AT_rich Low_complexity Low_complexity 1 36 0 1615 174 0 11 chrX 118985183 118985464 -57988676 + AluJo SINE Alu 5 282 -30 369 0 0 0 chrX 118986853 118986894 -57987246 + (CA)n Simple_repeat Simple_repeat 1 41 0 258 305 125 39 chrX 118987379 118987507 -57986633 - MIR SINE MIR -46 216 78 205 173 0 161 chrX 118988034 118988115 -57986025 - L2 LINE L2 -92 3221 3154 1166 247 104 29 chrX 118988314 118988690 -57985450 - MLT1J2 LTR MaLR -46 404 1 4331 153 44 12 chrX 118988714 118989549 -57984591 - L1MA4 LINE L1 -6 6294 5433 732 288 22 60 chrX 118989913 118989981 -57984159 + MIR SINE MIR 6 75 -187 7019 62 37 10 chrX 118989981 118991251 -57982889 - L1PA13 LINE L1 0 6163 4879 732 288 22 60 chrX 118991251 118991449 -57982691 + MIR SINE MIR 75 262 0 349 327 13 13 chrX 118991672 118991822 -57982318 + L2 LINE L2 3164 3313 0 2141 101 20 3 chrX 118996029 118996325 -57977815 + AluSq SINE Alu 1 301 -12 301 286 163 0 chrX 118996345 118996443 -57977697 - MER81 DNA DNA 0 114 1 266 348 36 27 chrX 118996467 118996579 -57977561 - MIR SINE MIR -62 146 34 7265 34 2 0 chrX 118997712 118999240 -57974900 - L1PA5 LINE L1 -5 6149 4610 256 297 47 0 chrX 118999615 118999679 -57974461 + MIR3 SINE MIR 139 205 -3 390 226 38 9 chrX 118999754 118999860 -57974280 - MLT1L LTR MaLR 0 615 507 784 206 118 18 chrX 118999868 119000096 -57974044 - MLT1L LTR MaLR -364 251 1 2324 116 5 50 chrX 119000157 119000353 -57973787 - THE1B LTR MaLR 0 364 192 1865 28 0 5 chrX 119000353 119000567 -57973573 - AluY SINE Alu -12 299 87 2324 116 5 50 chrX 119000567 119000751 -57973389 - THE1B LTR MaLR -172 192 1 341 337 43 62 chrX 119002095 119002353 -57971787 - L2 LINE L2 -456 2858 2606 1231 301 83 38 chrX 119002646 119003285 -57970855 - L2 LINE L2 -889 2425 1758 221 336 80 84 chrX 119003728 119003990 -57970150 + L3b LINE CR1 1303 1563 -20 543 336 24 36 chrX 119004274 119004527 -57969613 - MIR SINE MIR 0 262 13 457 277 48 80 chrX 119005321 119005570 -57968570 - L3 LINE CR1 -61 1516 1276 750 317 8 33 chrX 119005581 119005821 -57968319 - MIR SINE MIR -27 235 2 436 239 248 28 chrX 119005821 119006039 -57968101 - L3 LINE CR1 -293 1284 1019 475 302 173 15 chrX 119006287 119006628 -57967512 - L3 LINE CR1 -586 991 597 427 260 166 6 chrX 119006703 119006884 -57967256 - MER112 DNA MER1_type -49 211 2 212 377 91 37 chrX 119006894 119007313 -57966827 - L3 LINE CR1 -1080 497 1 567 0 0 0 chrX 119007623 119007686 -57966454 + (CA)n Simple_repeat Simple_repeat 2 64 0 1857 158 3 7 chrX 119007767 119008059 -57966081 + AluJb SINE Alu 1 291 -21 213 232 18 0 chrX 119008725 119008781 -57965359 + GA-rich Low_complexity Low_complexity 1 57 0 705 166 14 14 chrX 119009348 119009493 -57964647 + L1MB8 LINE L1 6033 6177 -1 728 183 0 29 chrX 119012367 119012504 -57961636 + MER45A DNA AcHobo 46 178 0 265 287 42 98 chrX 119012670 119012793 -57961347 - L3 LINE CR1 -9 1568 1454 337 329 65 39 chrX 119012793 119012948 -57961192 + MIR3 SINE MIR 1 159 -49 197 32 0 32 chrX 119015343 119015374 -57958766 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 528 294 36 22 chrX 119015575 119015829 -57958311 - L1M4 LINE L1 -2171 3975 3721 432 275 221 45 chrX 119016202 119016359 -57957781 - L2 LINE L2 -1 3312 3184 321 47 0 0 chrX 119016359 119016402 -57957738 + (CA)n Simple_repeat Simple_repeat 2 44 0 432 275 221 45 chrX 119016402 119016619 -57957521 - L2 LINE L2 -129 3184 2872 195 209 45 90 chrX 119016859 119016926 -57957214 - L2 LINE L2 -11 3261 3198 2305 103 0 10 chrX 119016998 119017308 -57956832 - AluSq SINE Alu -6 307 1 407 293 83 13 chrX 119017428 119017585 -57956555 - MIR SINE MIR -88 174 7 469 262 24 0 chrX 119017700 119017826 -57956314 - MER94 DNA DNA -3 131 3 334 176 28 102 chrX 119018154 119018262 -57955878 + MER112 DNA MER1_type 148 247 -13 269 263 40 0 chrX 119018546 119018622 -57955518 + ORSL DNA AcHobo 197 275 0 506 248 81 50 chrX 119018757 119018957 -57955183 + MIR SINE MIR 7 206 -56 22 0 0 0 chrX 119019365 119019387 -57954753 + AT_rich Low_complexity Low_complexity 1 22 0 2109 168 29 60 chrX 119020314 119020833 -57953307 - MLT1D LTR MaLR 0 505 3 1247 162 12 12 chrX 119021220 119021467 -57952673 + L1MB7 LINE L1 5938 6184 0 180 0 0 0 chrX 119021589 119021609 -57952531 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 10539 176 21 5 chrX 119021647 119021976 -57952164 + L1PA13 LINE L1 3151 3473 -2695 240 59 0 0 chrX 119021976 119022010 -57952130 + (CCAA)n Simple_repeat Simple_repeat 3 36 0 10539 176 21 5 chrX 119022010 119023920 -57950220 + L1PA13 LINE L1 3473 5426 -742 4461 114 16 3 chrX 119023924 119024602 -57949538 + L1PA13 LINE L1 5476 6162 -1 4166 36 0 2 chrX 119024608 119025110 -57949030 + L1PA5 LINE L1 5654 6154 0 265 247 11 45 chrX 119025120 119025209 -57948931 + L3b LINE CR1 1152 1237 -346 514 309 67 15 chrX 119025312 119025664 -57948476 - LTR33 LTR ERVL -84 437 44 768 231 74 45 chrX 119025875 119026117 -57948023 - MIR SINE MIR -6 256 8 234 91 0 0 chrX 119026680 119026713 -57947427 + (TC)n Simple_repeat Simple_repeat 2 34 0 220 340 97 10 chrX 119026789 119026892 -57947248 + L3b LINE CR1 1419 1530 -53 207 232 18 18 chrX 119027243 119027299 -57946841 + L3b LINE CR1 1528 1583 0 21 0 0 0 chrX 119028072 119028093 -57946047 + AT_rich Low_complexity Low_complexity 1 21 0 2338 106 3 0 chrX 119029970 119030272 -57943868 - AluSp SINE Alu -10 303 1 2221 113 0 7 chrX 119031158 119031460 -57942680 - AluSx SINE Alu -12 300 1 206 286 0 0 chrX 119031641 119031690 -57942450 - MIR SINE MIR -130 132 84 589 268 103 6 chrX 119032959 119033176 -57940964 + MIR SINE MIR 17 252 -10 1476 168 99 60 chrX 119033328 119033710 -57940430 + MLT2C1 LTR ERVL 1 397 0 263 281 132 50 chrX 119034356 119034477 -57939663 + MIR SINE MIR 122 252 -10 2408 72 0 25 chrX 119034922 119035240 -57938900 - AluY SINE Alu -1 310 1 288 170 0 0 chrX 119035946 119035999 -57938141 + (TA)n Simple_repeat Simple_repeat 2 54 0 28 29 0 0 chrX 119036065 119036100 -57938040 + AT_rich Low_complexity Low_complexity 1 35 0 230 322 25 10 chrX 119037438 119037640 -57936500 - L1ME LINE L1 -196 5925 5721 242 196 0 0 chrX 119037863 119037909 -57936231 - L1ME LINE L1 -507 5614 5569 225 0 0 0 chrX 119038411 119038436 -57935704 + (T)n Simple_repeat Simple_repeat 1 25 0 779 207 0 0 chrX 119042379 119042514 -57931626 - MER5A DNA MER1_type 0 189 55 180 273 148 23 chrX 119042981 119043069 -57931071 + L2 LINE L2 3166 3264 -8 26 64 0 0 chrX 119043358 119043405 -57930735 + AT_rich Low_complexity Low_complexity 1 47 0 502 272 122 0 chrX 119044581 119044777 -57929363 - MIR SINE MIR -3 259 39 21 0 0 0 chrX 119046111 119046132 -57928008 + AT_rich Low_complexity Low_complexity 1 21 0 475 236 264 5 chrX 119046562 119046774 -57927366 + L2 LINE L2 3008 3274 -39 184 265 20 0 chrX 119047315 119047364 -57926776 + MIR3 SINE MIR 151 200 -8 * 488 220 104 55 chrX 119047361 119047543 -57926597 + L2 LINE L2 3123 3313 0 2782 139 9 0 chrX 119048513 119048937 -57925203 + MSTA LTR MaLR 1 428 0 272 229 0 0 chrX 119048987 119049035 -57925105 - L2 LINE L2 -29 3243 3196 1432 242 176 30 chrX 119049045 119049540 -57924600 + MLT1G LTR MaLR 15 581 -9 444 246 174 65 chrX 119050323 119050599 -57923541 - MER102a DNA MER1_type 0 330 36 760 259 56 35 chrX 119051558 119051790 -57922350 + MIR SINE MIR 8 244 -18 571 238 0 0 chrX 119052085 119052207 -57921933 + MIR SINE MIR 82 203 -59 411 258 145 16 chrX 119054897 119055049 -57919091 + MER5A DNA MER1_type 1 186 -3 2449 61 0 0 chrX 119055124 119055420 -57918720 - AluY SINE Alu -15 296 1 252 350 73 32 chrX 119055605 119055728 -57918412 - L2 LINE L2 -23 3249 3122 25 51 0 0 chrX 119056761 119056800 -57917340 + AT_rich Low_complexity Low_complexity 1 39 0 327 283 71 9 chrX 119057709 119057822 -57916318 - MIR SINE MIR -26 236 117 402 250 152 67 chrX 119057989 119058003 -57916137 + MIR SINE MIR 13 24 -238 183 42 0 0 chrX 119058003 119058027 -57916113 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 402 250 152 67 chrX 119058027 119058046 -57916094 + MIR SINE MIR 24 40 -222 2201 99 0 3 chrX 119058046 119058339 -57915801 - AluSx SINE Alu -15 297 6 402 250 152 67 chrX 119058339 119058468 -57915672 + MIR SINE MIR 40 190 -72 251 179 0 0 chrX 119058477 119058516 -57915624 - 5S rRNA rRNA -81 40 2 2136 170 42 11 chrX 119058516 119058800 -57915340 + L1MA10 LINE L1 5857 6162 -172 396 40 0 0 chrX 119058800 119058850 -57915290 + (CA)n Simple_repeat Simple_repeat 2 51 0 2136 170 42 11 chrX 119058850 119059019 -57915121 + L1MA10 LINE L1 6162 6324 -10 187 326 0 0 chrX 119059043 119059086 -57915054 + MIR SINE MIR 220 262 0 1041 257 62 96 chrX 119059864 119060267 -57913873 + L2 LINE L2 2717 3079 -234 2215 81 12 30 chrX 119060267 119060499 -57913641 - L1MA2 LINE L1 0 6304 6078 2369 86 0 10 chrX 119060499 119060800 -57913340 + AluSq SINE Alu 1 298 -15 2215 81 12 30 chrX 119060800 119060902 -57913238 - L1MA2 LINE L1 -226 6078 5976 1041 257 62 96 chrX 119060902 119061107 -57913033 + L2 LINE L2 3079 3289 -24 1976 123 0 14 chrX 119061107 119061391 -57912749 + AluSx SINE Alu 1 280 -32 509 304 136 10 chrX 119062392 119062600 -57911540 + L2 LINE L2 2774 3004 -309 23 0 0 0 chrX 119062644 119062667 -57911473 + AT_rich Low_complexity Low_complexity 1 23 0 5290 122 4 0 chrX 119062701 119063472 -57910668 + HSMAR2 DNA Mariner 2 775 -527 1329 125 0 25 chrX 119063473 119063673 -57910467 + AluSx SINE Alu 28 222 -90 3097 99 48 38 chrX 119063673 119064177 -57909963 + HSMAR2 DNA Mariner 790 1298 -4 371 353 49 0 chrX 119064199 119064301 -57909839 + L2 LINE L2 3134 3240 -32 919 205 50 5 chrX 119064378 119064578 -57909562 + MER3 DNA MER1_type 1 209 0 583 292 130 48 chrX 119064639 119065102 -57909038 - L1M4 LINE L1 -979 5167 4667 21 36 0 0 chrX 119066371 119066399 -57907741 + AT_rich Low_complexity Low_complexity 1 28 0 876 249 40 22 chrX 119066544 119066670 -57907470 + MIR SINE MIR 34 167 -95 1849 179 0 0 chrX 119066670 119066967 -57907173 + AluJb SINE Alu 1 297 -15 876 249 40 22 chrX 119066967 119067065 -57907075 + MIR SINE MIR 167 262 0 429 20 0 0 chrX 119067476 119067526 -57906614 + (TG)n Simple_repeat Simple_repeat 1 50 0 205 293 0 0 chrX 119067541 119067599 -57906541 - MIR SINE MIR -46 216 159 608 272 0 20 chrX 119067707 119067854 -57906286 - MIR SINE MIR -105 157 14 854 266 15 46 chrX 119068536 119068795 -57905345 + MIR SINE MIR 3 253 -9 75 0 0 0 chrX 119070644 119070719 -57903421 + AT_rich Low_complexity Low_complexity 1 75 0 796 163 0 15 chrX 119072953 119073088 -57901052 - FLAM_C SINE Alu 0 133 1 260 307 33 65 chrX 119074125 119074278 -57899862 + MIR SINE MIR 58 205 -57 * 1669 262 149 19 chrX 119074245 119074894 -57899246 - L2 LINE L2 -762 2552 1819 460 260 55 39 chrX 119075520 119075701 -57898439 + L1ME3 LINE L1 242 425 -5694 24 0 0 0 chrX 119075707 119075731 -57898409 + AT_rich Low_complexity Low_complexity 1 24 0 1768 164 22 0 chrX 119076206 119076505 -57897635 + AluJb SINE Alu 1 305 0 3115 268 56 55 chrX 119076528 119078254 -57895886 + L1M4 LINE L1 2469 4196 -1950 1151 274 137 18 chrX 119078285 119079208 -57894932 + L1ME3 LINE L1 2619 3650 -2479 693 223 0 0 chrX 119079242 119079372 -57894768 - FLAM_A SINE Alu -12 130 1 238 164 0 75 chrX 119079391 119079458 -57894682 + L1P LINE L1 3699 3760 -2386 245 333 45 29 chrX 119079617 119079929 -57894211 + L1ME3 LINE L1 3866 4182 -1947 567 290 58 0 chrX 119080113 119080337 -57893803 + L1ME3 LINE L1 4440 4676 -1453 319 329 20 0 chrX 119080377 119080526 -57893614 + L1ME3 LINE L1 5721 5872 -273 261 298 0 0 chrX 119082305 119082362 -57891778 + (CA)n Simple_repeat Simple_repeat 2 58 0 2222 123 0 0 chrX 119083351 119083644 -57890496 - AluSx SINE Alu -19 293 1 1778 162 17 24 chrX 119085214 119085510 -57888630 - AluJb SINE Alu -16 296 3 808 246 125 42 chrX 119085676 119085916 -57888224 + MIR SINE MIR 2 261 -1 672 328 118 12 chrX 119086045 119086450 -57887690 - L3 LINE CR1 -2 1575 1128 198 358 38 56 chrX 119086505 119086831 -57887309 + L2 LINE L2 2765 3082 -190 228 328 131 33 chrX 119086921 119087043 -57887097 + L2 LINE L2 3139 3272 0 180 152 0 30 chrX 119087041 119087074 -57887066 - L2 LINE L2 -4 3268 3237 * 1208 174 14 2 chrX 119087470 119087709 -57886431 + L1MA9 LINE L1 5724 5961 -195 258 244 47 0 chrX 119087686 119087772 -57886368 - L1MC4 LINE L1 -1339 6703 6614 * 632 235 18 12 chrX 119087809 119087975 -57886165 + L1MA9 LINE L1 5944 6110 -202 25 31 0 0 chrX 119087975 119088007 -57886133 + AT_rich Low_complexity Low_complexity 1 32 0 5104 139 6 43 chrX 119088008 119088342 -57885798 - L1PA16 LINE L1 -6 6160 5815 2212 114 0 7 chrX 119088342 119088649 -57885491 - AluSg SINE Alu -5 305 1 5104 139 6 43 chrX 119088649 119089176 -57884964 - L1PA16 LINE L1 -351 5815 5332 2896 88 25 0 chrX 119089176 119089574 -57884566 - L1PA10 LINE L1 -11 6157 5750 5104 139 6 43 chrX 119089574 119089622 -57884518 - L1PA16 LINE L1 -834 5332 5284 1007 201 5 0 chrX 119089631 119089850 -57884290 - L1 LINE L1 -1608 5241 5022 44444 36 1 1 chrX 119089855 119095987 -57878153 + L1PA3 LINE L1 27 6152 -3 17665 173 18 61 chrX 119096000 119096637 -57877503 - L1PA15-16 LINE L1 -1812 5037 4374 360 0 0 0 chrX 119096637 119096677 -57877463 + (TTG)n Simple_repeat Simple_repeat 3 42 0 17665 173 18 61 chrX 119096677 119099719 -57874421 - L1PA15-16 LINE L1 -2475 4374 1746 2040 125 3 48 chrX 119099719 119100032 -57874108 - AluSx SINE Alu -11 301 3 17665 173 18 61 chrX 119100032 119101589 -57872551 - L1PA15-16 LINE L1 -5103 1746 124 819 199 23 6 chrX 119101663 119101839 -57872301 - MLT1A2 LTR MaLR 0 374 196 388 265 83 0 chrX 119101858 119101990 -57872150 + L1MA9 LINE L1 6132 6274 -38 1068 128 20 29 chrX 119102488 119102692 -57871448 + L1MA9 LINE L1 6107 6308 -4 356 305 113 40 chrX 119103656 119104168 -57869972 - L2 LINE L2 -41 3272 2656 5435 91 5 21 chrX 119104168 119104979 -57869161 + L1PB1 LINE L1 5354 6151 0 7124 107 4 15 chrX 119104980 119106321 -57867819 + L1MA2 LINE L1 4957 6283 -21 694 139 17 9 chrX 119106321 119106436 -57867704 + Tigger7 DNA MER2_type 2376 2491 0 1319 296 111 23 chrX 119106444 119107100 -57867040 - L2 LINE L2 -778 2536 1823 2409 220 47 30 chrX 119107100 119108359 -57865781 + L1MC4 LINE L1 6473 7900 -142 1009 297 146 28 chrX 119108418 119109139 -57865001 - L2 LINE L2 -1480 1834 1029 1290 252 143 12 chrX 119110127 119110547 -57863593 + MLT1D LTR MaLR 31 505 0 786 322 50 0 chrX 119110666 119110905 -57863235 - MIR SINE MIR -10 252 2 336 312 71 18 chrX 119111831 119112007 -57862133 + MIR SINE MIR 37 216 -46 228 276 249 17 chrX 119112023 119112220 -57861920 + MIR SINE MIR 5 235 -27 529 274 122 6 chrX 119113387 119113551 -57860589 + MER5A DNA MER1_type 7 189 0 390 289 70 9 chrX 119113692 119113806 -57860334 + MIR SINE MIR 23 143 -65 197 328 15 15 chrX 119113832 119113899 -57860241 + MIR3 SINE MIR 139 205 -3 525 301 95 24 chrX 119113974 119114200 -57859940 + MIR SINE MIR 10 249 -13 384 215 0 0 chrX 119114213 119114320 -57859820 + GA-rich Low_complexity Low_complexity 2 108 0 2221 252 35 55 chrX 119114374 119115330 -57858810 - L2 LINE L2 -4 3309 2368 522 278 25 45 chrX 119118098 119118294 -57855846 - MIR3 SINE MIR -55 207 12 697 267 111 23 chrX 119118319 119118671 -57855469 - MLT1I LTR MaLR -6 403 20 201 213 0 0 chrX 119119487 119119534 -57854606 + (TG)n Simple_repeat Simple_repeat 1 47 0 186 240 0 0 chrX 119120009 119120059 -57854081 + CT-rich Low_complexity Low_complexity 1 50 0 244 76 61 15 chrX 119120061 119120127 -57854013 + (TCTA)n Simple_repeat Simple_repeat 3 71 0 467 344 72 53 chrX 119121054 119121487 -57852653 + MER115 DNA AcHobo 8 448 -245 253 289 0 0 chrX 119121491 119121543 -57852597 + Zaphod DNA AcHobo 3979 4030 -1 2140 99 3 0 chrX 119121885 119122167 -57851973 + AluSx SINE Alu 1 283 -29 386 273 82 12 chrX 119122639 119122807 -57851333 + MIR SINE MIR 40 222 -40 246 206 216 10 chrX 119123080 119123182 -57850958 - MIR SINE MIR -14 248 126 218 376 0 17 chrX 119123531 119123648 -57850492 + L3b LINE CR1 1265 1379 -204 326 261 71 43 chrX 119123653 119123837 -57850303 + MER5A DNA MER1_type 1 189 0 383 306 33 16 chrX 119123952 119124073 -57850067 + L2 LINE L2 3146 3268 -4 301 313 55 16 chrX 119125540 119125668 -57848472 - L1M4 LINE L1 -1302 4844 4712 1845 176 0 7 chrX 119126085 119126391 -57847749 + AluJo SINE Alu 3 306 -6 457 277 195 19 chrX 119126680 119127064 -57847076 - L1MC4a LINE L1 -484 5686 5386 643 339 73 24 chrX 119127185 119127568 -57846572 - L3b LINE CR1 -4 1579 1178 311 284 81 7 chrX 119127794 119127942 -57846198 - L1ME4a LINE L1 -267 5854 5696 2259 109 22 41 chrX 119128359 119128478 -57845662 - MER46B DNA MER2_type -2495 236 248 2064 102 11 3 chrX 119128478 119128783 -57845357 + AluSx SINE Alu 2 308 0 2259 109 22 41 chrX 119128783 119129028 -57845112 - MER46B DNA MER2_type -2482 249 1 283 214 143 0 chrX 119129497 119129567 -57844573 - MER116 DNA Mariner 0 80 1 21 36 0 0 chrX 119130330 119130358 -57843782 + AT_rich Low_complexity Low_complexity 1 28 0 197 276 7 0 chrX 119130515 119130660 -57843480 + (TG)n Simple_repeat Simple_repeat 2 147 0 595 299 58 13 chrX 119131305 119131529 -57842611 - MIR SINE MIR -27 235 2 274 261 29 0 chrX 119131822 119131891 -57842249 - MIR SINE MIR -111 151 81 370 284 149 0 chrX 119131954 119132102 -57842038 + MIR SINE MIR 92 261 -1 316 337 55 55 chrX 119132108 119132271 -57841869 + MIR SINE MIR 10 172 -90 361 252 107 15 chrX 119132330 119132461 -57841679 + MER103 DNA DNA 2 144 -22 205 206 254 0 chrX 119132551 119132614 -57841526 + MIR SINE MIR 172 250 -12 1238 143 12 28 chrX 119132671 119132801 -57841339 + L1MA8 LINE L1 6044 6170 -121 2399 131 51 10 chrX 119132801 119133212 -57840928 - MSTA LTR MaLR 0 428 1 1238 143 12 28 chrX 119133212 119133333 -57840807 + L1MA8 LINE L1 6170 6291 0 780 116 26 107 chrX 119135617 119135850 -57838290 - Charlie5 DNA MER1_type -27 2585 2372 999 298 46 27 chrX 119136024 119136397 -57837743 + MLT1J LTR MaLR 73 452 -59 528 320 81 14 chrX 119136820 119137037 -57837103 - MIR SINE MIR -17 245 18 557 349 16 0 chrX 119137176 119137372 -57836768 + MIR3 SINE MIR 6 205 -3 262 270 124 0 chrX 119137844 119137933 -57836207 - MIR SINE MIR -68 140 41 1385 314 68 23 chrX 119138073 119138888 -57835252 + L1MEd LINE L1 407 1257 -4862 2147 103 38 7 chrX 119138902 119139194 -57834946 + AluSg SINE Alu 1 301 -9 2293 92 14 0 chrX 119139203 119139495 -57834645 - AluSg SINE Alu -14 296 1 26 30 0 0 chrX 119140876 119140909 -57833231 + AT_rich Low_complexity Low_complexity 1 33 0 338 304 54 18 chrX 119142428 119142540 -57831600 - MIR3 SINE MIR -7 201 86 388 289 0 0 chrX 119143973 119144077 -57830063 + MIR SINE MIR 38 141 -67 474 226 71 32 chrX 119144082 119144237 -57829903 + L2 LINE L2 3153 3313 0 183 333 50 20 chrX 119144234 119144333 -57829807 + L2 LINE L2 2393 2494 -820 * 2353 90 6 0 chrX 119144361 119144672 -57829468 - AluSq SINE Alu 0 313 1 331 353 20 20 chrX 119144825 119144978 -57829162 + L2 LINE L2 2689 2841 -473 213 129 0 0 chrX 119145224 119145255 -57828885 + MIR SINE MIR 94 124 -138 324 343 130 44 chrX 119145846 119146693 -57827447 + L2 LINE L2 2113 3055 -217 702 254 174 0 chrX 119146819 119147020 -57827120 + MIR SINE MIR 1 236 -26 417 315 24 0 chrX 119147221 119147348 -57826792 + L2 LINE L2 3172 3301 -12 268 208 13 13 chrX 119147369 119147446 -57826694 + (TA)n Simple_repeat Simple_repeat 1 77 0 205 333 91 30 chrX 119147939 119147964 -57826176 - L2 LINE L2 -166 3106 3084 2314 77 3 3 chrX 119147964 119148264 -57825876 + AluY SINE Alu 1 300 -11 205 333 91 30 chrX 119148264 119148403 -57825737 - L2 LINE L2 -188 3084 2932 200 345 121 0 chrX 119148707 119148872 -57825268 - L2 LINE L2 -994 2320 2136 22 35 0 0 chrX 119150466 119150495 -57823645 + AT_rich Low_complexity Low_complexity 1 29 0 1016 231 27 92 chrX 119150595 119150932 -57823208 - MER102b DNA MER1_type -7 334 20 765 132 6 28 chrX 119151329 119151511 -57822629 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 0 0 0 chrX 119152045 119152066 -57822074 + AT_rich Low_complexity Low_complexity 1 21 0 630 225 115 37 chrX 119153659 119153850 -57820290 + MIR SINE MIR 38 243 -19 212 268 0 18 chrX 119153875 119153931 -57820209 + (CTA)n Simple_repeat Simple_repeat 1 55 0 327 25 0 0 chrX 119155015 119155055 -57819085 + (TG)n Simple_repeat Simple_repeat 2 41 0 312 324 61 40 chrX 119155312 119155460 -57818680 + MER5A DNA MER1_type 7 157 -32 702 307 28 16 chrX 119156632 119156883 -57817257 + MIR SINE MIR 8 261 -1 205 266 62 16 chrX 119156948 119157012 -57817128 + MIR SINE MIR 194 260 -2 2374 94 7 0 chrX 119157204 119157513 -57816627 + AluSx SINE Alu 1 311 -1 656 101 10 10 chrX 119159561 119159660 -57814480 + AluJ/FLAM SINE Alu 1 99 -213 25 31 0 0 chrX 119159660 119159692 -57814448 + AT_rich Low_complexity Low_complexity 1 32 0 197 312 184 24 chrX 119161307 119161432 -57812708 - L2 LINE L2 -1 3271 3127 727 261 24 29 chrX 119161504 119161711 -57812429 + L2 LINE L2 3078 3283 -30 387 252 301 7 chrX 119162282 119162425 -57811715 - MER5A DNA MER1_type -1 188 4 878 135 0 8 chrX 119164116 119164242 -57809898 + AluSq/x SINE Alu 1 125 -188 4782 184 24 13 chrX 119166608 119167416 -57806724 + L1MB7 LINE L1 4333 5165 -1009 2108 58 0 4 chrX 119167416 119167675 -57806465 + AluY SINE Alu 40 297 -14 4782 184 24 13 chrX 119167675 119168357 -57805783 + L1MB7 LINE L1 5165 5838 -336 1274 159 44 26 chrX 119168358 119168628 -57805512 + L1MB7 LINE L1 5899 6173 -11 2382 81 0 3 chrX 119169464 119169761 -57804379 + AluSg SINE Alu 8 303 -7 226 330 9 73 chrX 119170139 119170248 -57803892 + L2 LINE L2 3123 3224 -48 240 35 0 0 chrX 119171812 119171841 -57802299 + (A)n Simple_repeat Simple_repeat 1 29 0 180 77 0 0 chrX 119171846 119171872 -57802268 + (CA)n Simple_repeat Simple_repeat 2 27 0 378 0 0 0 chrX 119171964 119172006 -57802134 + (TG)n Simple_repeat Simple_repeat 2 43 0 233 288 35 117 chrX 119172213 119172340 -57801800 + MIR SINE MIR 33 141 -116 2373 73 3 10 chrX 119172340 119172640 -57801500 + AluSp SINE Alu 1 298 -15 233 288 35 117 chrX 119172640 119172692 -57801448 + MIR SINE MIR 141 196 -61 306 143 20 0 chrX 119173238 119173287 -57800853 - MIR SINE MIR -55 153 104 428 200 12 12 chrX 119173650 119173735 -57800405 + MER92C LTR ERV1 1 85 -469 288 188 21 0 chrX 119173731 119173779 -57800361 + MER92B LTR ERV1 56 104 -532 * 2022 149 17 8 chrX 119173826 119174230 -57799910 + MER92C LTR ERV1 101 550 -4 270 234 318 0 chrX 119174334 119174441 -57799699 + MIR3 SINE MIR 54 194 -14 21 0 0 0 chrX 119174468 119174489 -57799651 + AT_rich Low_complexity Low_complexity 1 21 0 2452 87 0 0 chrX 119174592 119174891 -57799249 + AluSx SINE Alu 1 299 -13 21 0 0 0 chrX 119175147 119175168 -57798972 + AT_rich Low_complexity Low_complexity 1 21 0 1766 28 0 0 chrX 119175228 119175446 -57798694 - L1PA5 LINE L1 -683 5471 5254 5818 33 0 1 chrX 119175450 119176142 -57797998 + L1PA5 LINE L1 5459 6149 -5 822 268 13 17 chrX 119176392 119176623 -57797517 - MIR SINE MIR -31 231 2 666 211 265 0 chrX 119177225 119177410 -57796730 + MIR SINE MIR 3 236 -26 249 242 0 30 chrX 119179535 119179601 -57794539 - L2 LINE L2 0 3313 3250 1199 274 97 25 chrX 119179710 119180316 -57793824 + L1ME4a LINE L1 5471 6120 -1 281 340 35 40 chrX 119180711 119180911 -57793229 - L2 LINE L2 -552 2762 2564 258 116 0 0 chrX 119181000 119181043 -57793097 + (TC)n Simple_repeat Simple_repeat 2 44 0 222 256 70 35 chrX 119181106 119181192 -57792948 - L2 LINE L2 -829 2485 2397 234 323 52 26 chrX 119181373 119181528 -57792612 - L2 LINE L2 -1029 2285 2127 234 0 0 0 chrX 119181588 119181614 -57792526 + (A)n Simple_repeat Simple_repeat 1 26 0 1020 275 50 73 chrX 119182840 119183317 -57790823 - L2 LINE L2 -5 3308 2843 521 15 15 0 chrX 119183533 119183599 -57790541 + (TA)n Simple_repeat Simple_repeat 2 68 0 1244 157 157 0 chrX 119184224 119184504 -57789636 + MER33 DNA MER1_type 1 324 0 219 394 82 24 chrX 119184520 119184690 -57789450 + L2 LINE L2 3053 3232 -40 509 249 55 78 chrX 119184698 119185004 -57789136 + L1ME3 LINE L1 5519 5833 -329 * 1352 181 49 3 chrX 119184999 119185286 -57788854 + L1MD3 LINE L1 7684 7983 -12 928 236 50 0 chrX 119185315 119185514 -57788626 - MER63A DNA MER1_type -1 209 1 22 56 0 0 chrX 119185605 119185641 -57788499 + AT_rich Low_complexity Low_complexity 1 36 0 190 200 0 25 chrX 119185791 119185831 -57788309 + L2 LINE L2 3234 3272 0 21 36 0 0 chrX 119188024 119188052 -57786088 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chrX 119188295 119188319 -57785821 + AT_rich Low_complexity Low_complexity 1 24 0 262 314 0 0 chrX 119188763 119188833 -57785307 - L2 LINE L2 -5 3308 3239 943 227 56 28 chrX 119188904 119189155 -57784985 + MIR SINE MIR 5 262 0 274 230 0 40 chrX 119189236 119189310 -57784830 + HAL1 LINE L1 418 488 -2019 1544 203 97 83 chrX 119189867 119190434 -57783706 + L1MD3 LINE L1 7416 7990 -5 384 263 153 7 chrX 119190459 119190596 -57783544 - MIR3 SINE MIR -47 161 5 253 316 19 0 chrX 119191295 119191453 -57782687 + L1M LINE L1 5265 5425 -696 1370 242 7 7 chrX 119191460 119191758 -57782382 + L1M3e LINE L1 1 298 -6732 2408 222 78 45 chrX 119191765 119192422 -57781718 + L1M3e LINE L1 1258 1892 -5215 315 0 0 0 chrX 119192422 119192457 -57781683 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2408 222 78 45 chrX 119192457 119192846 -57781294 + L1M3e LINE L1 1892 2267 -4840 2368 94 3 0 chrX 119192846 119193143 -57780997 - AluSp SINE Alu -15 298 1 2408 222 78 45 chrX 119193143 119193718 -57780422 + L1M3e LINE L1 2267 2927 -4180 304 157 0 0 chrX 119193719 119193770 -57780370 + L1MA8 LINE L1 6195 6245 -46 7361 99 266 0 chrX 119193772 119195080 -57779060 + L1P LINE L1 3707 5362 -784 1285 167 5 0 chrX 119195080 119195302 -57778838 + L1MA9 LINE L1 5883 6105 -207 249 83 0 0 chrX 119195312 119195348 -57778792 + (TCTCC)n Simple_repeat Simple_repeat 3 38 0 258 125 104 0 chrX 119195348 119195396 -57778744 + L1MA7 LINE L1 6072 6124 -167 258 81 0 0 chrX 119195396 119195433 -57778707 + (TCTCC)n Simple_repeat Simple_repeat 3 39 0 258 125 104 0 chrX 119195433 119195481 -57778659 + L1MA7 LINE L1 6072 6124 -167 320 176 15 0 chrX 119195482 119195550 -57778590 + CT-rich Low_complexity Low_complexity 1 69 0 670 133 109 0 chrX 119195550 119195678 -57778462 - AluSp/q SINE Alu -15 298 157 208 143 0 0 chrX 119195680 119195715 -57778425 + (T)n Simple_repeat Simple_repeat 1 35 0 833 152 25 44 chrX 119196140 119196344 -57777796 + L1MA9 LINE L1 6110 6309 -3 642 272 116 42 chrX 119196347 119196796 -57777344 + L1ME4a LINE L1 5414 5895 -226 536 285 54 54 chrX 119196818 119196966 -57777174 + MIR SINE MIR 4 154 -108 1609 172 72 12 chrX 119196966 119197286 -57776854 - MER44D DNA MER2_type 0 609 1 536 285 54 54 chrX 119197286 119197358 -57776782 + MIR SINE MIR 153 224 -38 1664 234 130 39 chrX 119197408 119197769 -57776371 - L1MC4 LINE L1 -994 7048 6721 378 0 0 0 chrX 119197769 119197811 -57776329 + (TG)n Simple_repeat Simple_repeat 2 43 0 1664 234 130 39 chrX 119197811 119197831 -57776309 - L1MC4 LINE L1 -1321 6721 6704 2453 140 56 12 chrX 119197831 119198245 -57775895 + MSTB1 LTR MaLR 1 432 0 1664 234 130 39 chrX 119198245 119198507 -57775633 - L1MC4 LINE L1 -1338 6704 6345 899 258 50 7 chrX 119198567 119198846 -57775294 + L1MC/D LINE L1 5276 5566 -2242 415 204 76 23 chrX 119199001 119199133 -57775007 - L1M4 LINE L1 -2953 3193 3055 461 288 102 48 chrX 119199154 119199449 -57774691 - L1M4 LINE L1 -3181 2965 2655 1664 96 25 0 chrX 119199487 119199727 -57774413 + L1PA15 LINE L1 5911 6156 -9 21 57 0 0 chrX 119199727 119199762 -57774378 + AT_rich Low_complexity Low_complexity 1 35 0 668 145 0 17 chrX 119199884 119200001 -57774139 + L1PA8 LINE L1 129 243 -5632 * 2020 196 24 44 chrX 119199994 119200494 -57773646 + L1PA8 LINE L1 1073 1562 -4899 * 16044 131 9 1 chrX 119200493 119203012 -57771128 + L1PA8 LINE L1 2032 4570 -1891 7124 100 12 0 chrX 119203014 119204832 -57769308 + L1PA8 LINE L1 4663 6487 0 23 0 0 0 chrX 119205797 119205820 -57768320 + AT_rich Low_complexity Low_complexity 1 23 0 181 244 67 0 chrX 119207205 119207250 -57766890 - L2 LINE L2 0 3313 3266 1059 331 122 29 chrX 119207296 119208312 -57765828 - L2 LINE L2 0 3313 2200 789 292 51 0 chrX 119208733 119208969 -57765171 - MIR SINE MIR -10 252 5 202 150 0 25 chrX 119209176 119209216 -57764924 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 180 111 0 0 chrX 119210627 119210654 -57763486 + (CA)n Simple_repeat Simple_repeat 2 28 0 2269 122 33 25 chrX 119212239 119212600 -57761540 + THE1B LTR MaLR 1 364 0 11600 99 8 1 chrX 119212600 119214169 -57759971 + THE1B-int LTR MaLR 1 1580 0 725 149 60 15 chrX 119214169 119214303 -57759837 + THE1B LTR MaLR 1 140 -224 2173 137 19 22 chrX 119214305 119214670 -57759470 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 119215418 119215439 -57758701 + AT_rich Low_complexity Low_complexity 1 21 0 2545 238 41 43 chrX 119218095 119218976 -57755164 - L1ME LINE L1 -5176 894 16 329 255 0 38 chrX 119219208 119219314 -57754826 - L1MC4a LINE L1 -1866 5942 5841 982 279 82 31 chrX 119220228 119220644 -57753496 - MLT1J1 LTR MaLR -9 437 1 343 339 16 0 chrX 119220645 119220766 -57753374 - L2 LINE L2 -594 2720 2598 203 213 98 33 chrX 119221244 119221305 -57752835 - L2 LINE L2 0 3272 3208 190 217 17 67 chrX 119221281 119221341 -57752799 + L2 LINE L2 3252 3308 -5 * 608 263 26 19 chrX 119222564 119222720 -57751420 + MIR SINE MIR 32 188 -74 226 250 119 12 chrX 119223300 119223384 -57750756 - MER91B DNA MER1_type -12 178 86 21 57 0 0 chrX 119223609 119223644 -57750496 + AT_rich Low_complexity Low_complexity 1 35 0 1707 163 18 15 chrX 119224020 119224348 -57749792 - MER61C LTR ERV1 0 434 7 1284 206 0 0 chrX 119224474 119224697 -57749443 + MER58A DNA MER1_type 2 224 0 207 173 0 39 chrX 119225333 119225385 -57748755 + T-rich Low_complexity Low_complexity 1 50 0 30 27 0 0 chrX 119225572 119225609 -57748531 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chrX 119226147 119226170 -57747970 + AT_rich Low_complexity Low_complexity 1 23 0 447 302 63 20 chrX 119226186 119226441 -57747699 - L1MEc LINE L1 -4579 1731 1466 1073 237 186 38 chrX 119226464 119226515 -57747625 - MLT1L LTR MaLR -24 591 549 965 209 133 0 chrX 119226515 119226726 -57747414 + MER8 DNA MER2_type 1 239 0 1073 237 186 38 chrX 119226726 119227180 -57746960 - MLT1L LTR MaLR -66 549 11 1578 57 21 0 chrX 119227189 119227383 -57746757 - AluSg/x SINE Alu -10 300 103 1537 253 74 5 chrX 119227488 119227919 -57746221 - LTR16B LTR ERVL 0 464 4 796 278 62 74 chrX 119227965 119229145 -57744995 - L1MEc LINE L1 -4883 1236 3 2056 134 3 0 chrX 119230082 119230380 -57743760 + AluSx SINE Alu 5 303 -9 22 0 0 0 chrX 119230560 119230582 -57743558 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chrX 119231409 119231462 -57742678 + AT_rich Low_complexity Low_complexity 1 53 0 651 186 49 114 chrX 119231675 119231806 -57742334 + L1MC4a LINE L1 5765 5903 -1905 1944 146 0 10 chrX 119231806 119232094 -57742046 + AluJo SINE Alu 3 287 -25 651 186 49 114 chrX 119232094 119232269 -57741871 + L1MC4a LINE L1 5903 6051 -1757 609 292 42 7 chrX 119232432 119232576 -57741564 + MIR3 SINE MIR 46 194 -14 245 349 12 23 chrX 119234005 119234091 -57740049 - L2 LINE L2 0 3272 3188 252 346 61 37 chrX 119235063 119235277 -57738863 - L2 LINE L2 -14 3299 3081 390 225 126 37 chrX 119236005 119236196 -57737944 + MER112 DNA MER1_type 1 208 -52 355 326 43 59 chrX 119236258 119236445 -57737695 + MIR SINE MIR 17 200 -62 252 224 86 0 chrX 119237038 119237096 -57737044 - L2 LINE L2 0 3272 3210 254 352 38 42 chrX 119237454 119237690 -57736450 - L2 LINE L2 -182 3090 2856 207 324 114 9 chrX 119239024 119239129 -57735011 + L2 LINE L2 3156 3271 -1 201 354 0 0 chrX 119239694 119239759 -57734381 + MIR SINE MIR 70 134 -128 929 189 82 10 chrX 119240203 119240409 -57733731 + MLT1A2 LTR MaLR 1 221 -153 22 35 0 0 chrX 119240557 119240586 -57733554 + AT_rich Low_complexity Low_complexity 1 29 0 7121 51 5 5 chrX 119240806 119241993 -57732147 - L1PA6 LINE L1 0 6154 4967 1041 68 0 0 chrX 119241993 119242126 -57732014 + L1P LINE L1 4060 4192 -1954 604 216 47 34 chrX 119242136 119242192 -57731948 + MLT1A2 LTR MaLR 225 279 -111 2640 123 44 2 chrX 119242192 119242600 -57731540 - MER61B LTR ERV1 0 425 1 604 216 47 34 chrX 119242600 119242691 -57731449 + MLT1A2 LTR MaLR 279 374 -16 22 0 0 0 chrX 119242709 119242731 -57731409 + AT_rich Low_complexity Low_complexity 1 22 0 2053 96 17 0 chrX 119242889 119243180 -57730960 + L1PB1 LINE L1 5851 6146 -5 4438 163 25 32 chrX 119243451 119244324 -57729816 - L1MB1 LINE L1 0 6168 5300 252 0 0 0 chrX 119244324 119244352 -57729788 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 4438 163 25 32 chrX 119244352 119244488 -57729652 - L1MB1 LINE L1 -868 5300 5164 36344 33 1 1 chrX 119244870 119251019 -57723121 + L1PA3 LINE L1 5 6152 -3 257 246 16 16 chrX 119252537 119252598 -57721542 - MIR SINE MIR -2 260 200 793 267 80 4 chrX 119253576 119253801 -57720339 - MIR SINE MIR -15 247 6 29 0 0 0 chrX 119254118 119254147 -57719993 + AT_rich Low_complexity Low_complexity 1 29 0 588 51 13 0 chrX 119254942 119255020 -57719120 + MADE1 DNA Mariner 2 80 0 1701 121 16 96 chrX 119255312 119255667 -57718473 - AluSx SINE Alu 0 312 1 23 78 0 0 chrX 119256365 119256416 -57717724 + AT_rich Low_complexity Low_complexity 1 51 0 1215 162 15 39 chrX 119259773 119260032 -57714108 - MER46C DNA MER2_type 0 338 86 530 215 77 0 chrX 119260050 119260180 -57713960 - MER46C DNA MER2_type -197 141 2 493 207 7 100 chrX 119263069 119263209 -57710931 + MIR3 SINE MIR 81 207 -1 246 161 210 25 chrX 119263243 119263324 -57710816 - MIR SINE MIR -40 222 127 182 286 14 29 chrX 119263341 119263411 -57710729 - MIR3 SINE MIR -136 72 4 436 229 242 25 chrX 119263583 119263740 -57710400 + MIR3 SINE MIR 18 208 0 5211 157 21 8 chrX 119266421 119267635 -57706505 - L1PB4 LINE L1 0 6156 4923 2037 122 7 0 chrX 119268024 119268343 -57705797 - AluSg SINE Alu 0 321 1 237 65 0 0 chrX 119268348 119268379 -57705761 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 220 118 0 0 chrX 119268971 119269005 -57705135 + MIR SINE MIR 108 141 -67 948 291 138 13 chrX 119269110 119269502 -57704638 - L3 LINE CR1 -88 1489 1049 1525 332 93 29 chrX 119270163 119270892 -57703248 - L3 LINE CR1 -550 1027 252 21 0 0 0 chrX 119271304 119271325 -57702815 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 119271528 119271551 -57702589 + AT_rich Low_complexity Low_complexity 1 23 0 824 279 10 0 chrX 119271977 119272181 -57701959 + MIR SINE MIR 56 261 -1 2021 101 0 42 chrX 119272343 119272650 -57701490 + AluSx SINE Alu 1 294 -18 525 314 21 16 chrX 119273031 119273225 -57700915 + MIR SINE MIR 58 252 -10 810 244 25 54 chrX 119273524 119273766 -57700374 - MIR SINE MIR -26 236 2 200 189 0 0 chrX 119274333 119274370 -57699770 + CT-rich Low_complexity Low_complexity 3 39 0 537 289 30 0 chrX 119274560 119274695 -57699445 + MIR SINE MIR 48 186 -76 202 200 0 0 chrX 119276741 119276776 -57697364 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chrX 119277108 119277137 -57697003 + AT_rich Low_complexity Low_complexity 1 29 0 604 234 0 8 chrX 119277149 119277273 -57696867 - L2 LINE L2 -9 3304 3182 1673 189 18 36 chrX 119277417 119277707 -57696433 - MLT1A1 LTR MaLR -37 328 43 1852 175 0 0 chrX 119277707 119277999 -57696141 - AluJb SINE Alu -20 292 1 1673 189 18 36 chrX 119277999 119278042 -57696098 - MLT1A1 LTR MaLR -322 43 1 224 231 38 50 chrX 119278471 119278610 -57695530 - MIR SINE MIR -24 238 48 2379 91 7 0 chrX 119278614 119278921 -57695219 + AluSc SINE Alu 1 309 0 200 324 251 24 chrX 119279032 119279403 -57694737 - L2 LINE L2 -1154 2160 1706 2620 56 0 0 chrX 119279648 119279954 -57694186 - AluY SINE Alu -5 306 1 272 253 40 0 chrX 119280559 119280634 -57693506 + (TATG)n Simple_repeat Simple_repeat 2 79 0 511 350 27 16 chrX 119281311 119281497 -57692643 + MIR3 SINE MIR 20 207 -1 3526 116 77 7 chrX 119281849 119282419 -57691721 - MER4B LTR ERV1 0 610 1 1018 184 33 33 chrX 119283447 119283659 -57690481 - MER20 DNA MER1_type -6 213 2 241 242 129 32 chrX 119284533 119284657 -57689483 - L1ME4a LINE L1 -12 6109 5974 1798 209 125 65 chrX 119285319 119285999 -57688141 - MER50 LTR ERV1 0 734 14 867 194 59 54 chrX 119286043 119286265 -57687875 - MLT1J2 LTR MaLR -223 227 5 844 115 7 7 chrX 119286732 119286925 -57687215 + AluSp/q SINE Alu 175 367 0 21 0 0 0 chrX 119287642 119287663 -57686477 + AT_rich Low_complexity Low_complexity 1 21 0 33 43 0 0 chrX 119287795 119287842 -57686298 + AT_rich Low_complexity Low_complexity 1 47 0 455 270 113 0 chrX 119288142 119288257 -57685883 - L2 LINE L2 -15 3298 3171 674 302 15 24 chrX 119288258 119288463 -57685677 + MIR SINE MIR 48 250 -12 2329 84 3 0 chrX 119288945 119289241 -57684899 + AluSp SINE Alu 1 297 -16 4316 141 29 39 chrX 119289669 119289734 -57684406 + L1MB2 LINE L1 5336 5400 -771 2294 113 0 0 chrX 119289734 119290043 -57684097 + AluSx SINE Alu 4 312 0 4316 141 29 39 chrX 119290043 119290819 -57683321 + L1MB2 LINE L1 5400 6168 -3 22 35 0 0 chrX 119290822 119290851 -57683289 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chrX 119292505 119292542 -57681598 + AT_rich Low_complexity Low_complexity 1 37 0 528 271 18 41 chrX 119292849 119293019 -57681121 + MIR3 SINE MIR 43 208 0 1007 251 49 4 chrX 119293159 119293406 -57680734 + MIR SINE MIR 5 262 0 387 272 96 0 chrX 119293446 119293582 -57680558 + MIR SINE MIR 101 249 -13 920 286 50 13 chrX 119293789 119294167 -57679973 - L1ME4a LINE L1 -197 5924 5533 412 162 0 14 chrX 119294486 119294560 -57679580 + L1MA5A LINE L1 6179 6251 -46 3186 146 6 4 chrX 119294560 119295055 -57679085 - MER41E LTR ERV1 0 512 17 296 91 18 36 chrX 119295124 119295179 -57678961 + L1MA6 LINE L1 6247 6300 0 1706 96 17 166 chrX 119295210 119295566 -57678574 + AluSx SINE Alu 1 303 -9 626 305 60 10 chrX 119295572 119295772 -57678368 + MIR SINE MIR 28 237 -25 186 43 0 0 chrX 119295820 119295843 -57678297 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 791 228 20 51 chrX 119295951 119296205 -57677935 + L1ME2 LINE L1 5909 6154 -10 2119 117 7 0 chrX 119296311 119296618 -57677522 + AluSc SINE Alu 1 309 0 258 216 0 34 chrX 119296716 119296804 -57677336 + L1MC5 LINE L1 7833 7917 -44 21 57 0 0 chrX 119299043 119299078 -57675062 + AT_rich Low_complexity Low_complexity 1 35 0 970 246 106 0 chrX 119299239 119299475 -57674665 + MIR SINE MIR 1 261 -1 388 161 23 46 chrX 119299547 119299634 -57674506 + L2 LINE L2 3229 3313 0 * 491 227 102 8 chrX 119299632 119299760 -57674380 - MIR SINE MIR -42 220 81 664 249 101 0 chrX 119301904 119302093 -57672047 + MIR SINE MIR 55 262 0 542 338 98 49 chrX 119303765 119304236 -57669904 - L2 LINE L2 -457 2857 2364 245 368 49 14 chrX 119304306 119304450 -57669690 - L2 LINE L2 -1124 2190 2042 1977 212 45 16 chrX 119304471 119304961 -57669179 + Charlie1b DNA MER1_type 2 505 -18 194 0 39 0 chrX 119305962 119305988 -57668152 + (GA)n Simple_repeat Simple_repeat 2 28 0 272 200 147 0 chrX 119307147 119307222 -57666918 + MER102b DNA MER1_type 100 185 -156 212 289 0 0 chrX 119307232 119307277 -57666863 - L2 LINE L2 -19 3294 3250 256 313 10 30 chrX 119307314 119307413 -57666727 + MER102b DNA MER1_type 236 332 -9 433 288 64 95 chrX 119309040 119309460 -57664680 + HAL1b LINE L1 54 460 -888 1831 93 0 4 chrX 119309476 119309713 -57664427 - AluSp SINE Alu -2 311 76 2307 98 0 3 chrX 119311251 119311558 -57662582 - AluSg SINE Alu -4 306 1 220 389 8 90 chrX 119312661 119312905 -57661235 - L2 LINE L2 -56 3216 2993 1943 190 32 7 chrX 119313051 119313493 -57660647 - L1MB8 LINE L1 0 6178 5726 652 223 18 36 chrX 119313730 119313896 -57660244 + MER112 DNA MER1_type 1 163 -97 212 254 17 0 chrX 119313896 119313955 -57660185 + (CCTAT)n Simple_repeat Simple_repeat 1 60 0 2351 90 18 0 chrX 119316314 119316647 -57657493 - L1PB1 LINE L1 -1 6150 5812 364 364 69 22 chrX 119316998 119317459 -57656681 + L2 LINE L2 1177 1659 -1655 785 281 66 44 chrX 119317485 119317805 -57656335 + L2 LINE L2 2986 3312 -1 183 352 102 0 chrX 119317797 119317905 -57656235 + L2 LINE L2 1834 1952 -1362 * 556 371 97 16 chrX 119317972 119318527 -57655613 + L2 LINE L2 2069 2668 -646 227 371 46 86 chrX 119318703 119318983 -57655157 + L2 LINE L2 2897 3165 -107 376 328 122 16 chrX 119320711 119320900 -57653240 + MIR SINE MIR 40 248 -14 1751 211 113 87 chrX 119321026 119321604 -57652536 - MLT1E LTR MaLR 0 593 1 489 227 20 27 chrX 119322100 119322250 -57651890 - L1MB8 LINE L1 -370 5751 5603 515 255 7 7 chrX 119323603 119323744 -57650396 - MER103 DNA DNA -14 152 12 255 314 12 12 chrX 119324891 119324977 -57649163 + L2 LINE L2 2906 2991 -281 646 221 156 0 chrX 119325392 119325546 -57648594 + MER5A DNA MER1_type 9 186 -3 21 36 0 0 chrX 119325705 119325733 -57648407 + AT_rich Low_complexity Low_complexity 1 28 0 556 299 11 16 chrX 119325771 119325958 -57648182 - MER5A DNA MER1_type 0 189 4 1655 206 19 25 chrX 119327985 119328350 -57645790 + MLT1A2 LTR MaLR 1 363 -11 253 318 0 0 chrX 119328562 119328628 -57645512 - L2 LINE L2 0 3313 3248 21 0 0 0 chrX 119329181 119329202 -57644938 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 119329941 119329982 -57644158 + AT_rich Low_complexity Low_complexity 1 41 0 281 309 105 13 chrX 119330752 119330900 -57643240 - MIR SINE MIR -64 144 4 523 331 83 0 chrX 119331710 119331952 -57642188 - L1ME LINE L1 -358 5812 5551 327 239 0 0 chrX 119331955 119332043 -57642097 + (TA)n Simple_repeat Simple_repeat 1 88 0 189 74 0 0 chrX 119332042 119332069 -57642071 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 366 245 98 48 chrX 119332080 119332385 -57641755 - L1ME LINE L1 -649 5513 5191 2194 130 0 0 chrX 119333432 119333739 -57640401 + AluSq SINE Alu 1 307 -6 370 295 66 16 chrX 119334024 119334146 -57639994 + MIR3 SINE MIR 81 208 0 21 71 0 0 chrX 119335299 119335341 -57638799 + AT_rich Low_complexity Low_complexity 1 42 0 576 335 63 16 chrX 119335601 119336033 -57638107 - L2 LINE L2 -250 3022 2569 2011 96 66 134 chrX 119336117 119336354 -57637786 - LTR23 LTR ERV1 0 437 246 1996 112 14 4 chrX 119336354 119336632 -57637508 + AluSq SINE Alu 7 287 -26 2011 96 66 134 chrX 119336632 119336863 -57637277 - LTR23 LTR ERV1 -191 246 1 191 224 30 75 chrX 119336863 119336930 -57637210 + MIR SINE MIR 61 124 -138 211 310 0 0 chrX 119337370 119337428 -57636712 - MIR3 SINE MIR 0 208 151 774 274 39 63 chrX 119337885 119337946 -57636194 - MIR SINE MIR 0 262 201 1794 152 18 0 chrX 119337946 119338229 -57635911 + AluJb SINE Alu 1 288 -24 774 274 39 63 chrX 119338229 119338422 -57635718 - MIR SINE MIR -61 201 14 212 29 0 59 chrX 119341983 119342017 -57632123 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 2416 83 0 0 chrX 119343474 119343774 -57630366 + AluSg SINE Alu 3 302 -8 1002 273 100 51 chrX 119344022 119344397 -57629743 - L1ME4a LINE L1 -2 6119 5699 1838 170 3 0 chrX 119344397 119344691 -57629449 - AluJb SINE Alu -15 297 3 1002 273 100 51 chrX 119344691 119344946 -57629194 - L1ME4a LINE L1 -422 5699 5458 1913 119 39 39 chrX 119345356 119345666 -57628474 + AluSx SINE Alu 1 310 -2 399 300 53 27 chrX 119346086 119346236 -57627904 + MIR SINE MIR 13 166 -96 22 0 0 0 chrX 119346647 119346669 -57627471 + AT_rich Low_complexity Low_complexity 1 22 0 426 281 66 6 chrX 119346756 119346923 -57627217 + L1ME4a LINE L1 5747 5923 -198 193 250 0 42 chrX 119348376 119348424 -57625716 + MIR SINE MIR 196 241 -21 375 274 144 0 chrX 119348694 119348840 -57625300 - MLT1J LTR MaLR -344 167 1 444 303 73 34 chrX 119349968 119350146 -57623994 + MIR3 SINE MIR 21 205 -3 250 288 0 0 chrX 119350286 119350345 -57623795 + L3 LINE CR1 1516 1574 -3 1806 146 29 23 chrX 119350726 119351034 -57623106 + AluSx SINE Alu 1 310 -2 193 283 196 0 chrX 119351338 119351452 -57622688 + MIR SINE MIR 32 146 -62 503 245 38 0 chrX 119352429 119352535 -57621605 + L2 LINE L2 3158 3267 -5 248 242 106 0 chrX 119352574 119352640 -57621500 - MIR SINE MIR -31 231 159 589 290 35 10 chrX 119353099 119353299 -57620841 + MIR SINE MIR 3 207 -55 3834 59 0 0 chrX 119353443 119353918 -57620222 + L1PA7 LINE L1 5667 6141 -13 21 0 0 0 chrX 119353918 119353939 -57620201 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chrX 119353980 119354004 -57620136 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 204 200 0 0 chrX 119354457 119354507 -57619633 + (CATA)n Simple_repeat Simple_repeat 3 52 0 21 0 0 0 chrX 119354990 119355011 -57619129 + AT_rich Low_complexity Low_complexity 1 21 0 453 243 99 17 chrX 119356082 119356263 -57617877 - LTR33A LTR ERVL -2 521 326 555 283 164 9 chrX 119356495 119356721 -57617419 - MIR SINE MIR 0 262 2 361 189 14 0 chrX 119356936 119357010 -57617130 - MER116 DNA Mariner -5 75 1 993 265 59 45 chrX 119357135 119357816 -57616324 - L1MC4a LINE L1 -832 5314 5192 13987 177 78 13 chrX 119358526 119360760 -57613380 - L1MA8 LINE L1 0 7710 5623 1361 169 113 54 chrX 119360760 119360940 -57613200 + THE1C LTR MaLR 1 169 -206 324 0 0 0 chrX 119360940 119360976 -57613164 + (TC)n Simple_repeat Simple_repeat 1 36 0 1361 169 113 54 chrX 119360976 119361149 -57612991 + THE1C LTR MaLR 169 375 0 13987 177 78 13 chrX 119361149 119362900 -57611240 - L1MA8 LINE L1 -2087 5623 3366 369 0 0 0 chrX 119362900 119362941 -57611199 + (TG)n Simple_repeat Simple_repeat 2 42 0 13987 177 78 13 chrX 119362941 119363532 -57610608 - L1MA8 LINE L1 -4344 3366 2815 2672 148 19 5 chrX 119363532 119363952 -57610188 + MSTB LTR MaLR 1 426 0 1223 196 45 5 chrX 119363957 119364181 -57609959 + MSTB LTR MaLR 194 426 0 1959 259 30 36 chrX 119364181 119365103 -57609037 - L1MA8 LINE L1 -4746 2819 2008 228 260 94 52 chrX 119365616 119365712 -57608428 + MIR3 SINE MIR 1 100 -108 628 352 20 46 chrX 119367055 119367558 -57606582 - L2 LINE L2 -6 3307 2818 1467 139 4 8 chrX 119368064 119368308 -57605832 + L1PA8 LINE L1 1 243 -5632 * 2005 196 24 44 chrX 119368301 119368801 -57605339 + L1PA8 LINE L1 1073 1562 -4899 * 16091 131 9 1 chrX 119368800 119371319 -57602821 + L1PA8 LINE L1 2032 4570 -1891 7130 100 12 0 chrX 119371321 119373139 -57601001 + L1PA8 LINE L1 4663 6487 0 23 0 0 0 chrX 119374104 119374127 -57600013 + AT_rich Low_complexity Low_complexity 1 23 0 182 244 67 0 chrX 119375512 119375557 -57598583 - L2 LINE L2 0 3313 3266 1052 331 122 29 chrX 119375603 119376619 -57597521 - L2 LINE L2 0 3313 2200 792 291 49 4 chrX 119377029 119377276 -57596864 - MIR SINE MIR 0 262 5 202 150 0 25 chrX 119377483 119377523 -57596617 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 180 111 0 0 chrX 119378934 119378961 -57595179 + (CA)n Simple_repeat Simple_repeat 2 28 0 2248 122 33 25 chrX 119380546 119380907 -57593233 + THE1B LTR MaLR 1 364 0 11484 99 8 1 chrX 119380907 119382476 -57591664 + THE1B-int LTR MaLR 1 1580 0 720 149 60 15 chrX 119382476 119382610 -57591530 + THE1B LTR MaLR 1 140 -224 2150 137 19 22 chrX 119382612 119382977 -57591163 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 119383725 119383746 -57590394 + AT_rich Low_complexity Low_complexity 1 21 0 2599 239 41 43 chrX 119386400 119387283 -57586857 - L1ME LINE L1 -5174 896 16 225 255 0 38 chrX 119387515 119387621 -57586519 - L1MC4a LINE L1 -1866 5942 5841 356 277 59 10 chrX 119389354 119389455 -57584685 + L2 LINE L2 3189 3294 -19 5871 123 53 16 chrX 119389621 119389664 -57584476 - L1MA3 LINE L1 -10 6295 6255 2000 108 7 0 chrX 119389664 119389933 -57584207 - AluSc SINE Alu -15 294 24 5871 123 53 16 chrX 119389933 119390933 -57583207 - L1MA3 LINE L1 -50 6255 5214 22 56 0 0 chrX 119391212 119391248 -57582892 + AT_rich Low_complexity Low_complexity 1 36 0 392 325 32 24 chrX 119391278 119391404 -57582736 - L2 LINE L2 -9 3263 3137 1277 141 0 0 chrX 119391497 119391703 -57582437 + L1MA2 LINE L1 6093 6298 -6 632 293 57 20 chrX 119392340 119392586 -57581554 + MIR SINE MIR 4 258 -4 211 204 0 0 chrX 119393341 119393385 -57580755 + T-rich Low_complexity Low_complexity 1 44 0 1179 295 66 12 chrX 119394010 119394586 -57579554 - L1MC4a LINE L1 -1944 5864 5258 180 0 0 0 chrX 119394586 119394606 -57579534 + (A)n Simple_repeat Simple_repeat 1 20 0 297 0 0 0 chrX 119394753 119394786 -57579354 + (TC)n Simple_repeat Simple_repeat 2 34 0 276 30 0 0 chrX 119394785 119394818 -57579322 + (TA)n Simple_repeat Simple_repeat 1 33 0 * 244 239 34 11 chrX 119394890 119394978 -57579162 + (TA)n Simple_repeat Simple_repeat 2 91 0 25 65 0 0 chrX 119395578 119395624 -57578516 + AT_rich Low_complexity Low_complexity 1 46 0 397 275 132 39 chrX 119395771 119396157 -57577983 - L1ME4a LINE L1 -240 5881 5460 2161 142 6 17 chrX 119396177 119396529 -57577611 + MER7A DNA MER2_type 1 346 0 9283 202 34 10 chrX 119396568 119398327 -57575813 + L1 LINE L1 13 1813 -5036 1637 155 35 9 chrX 119398334 119398650 -57575490 + L1 LINE L1 5105 5428 -1420 * 4224 197 24 37 chrX 119398647 119399307 -57574833 + L1M2 LINE L1 3038 3679 -3169 2022 148 0 0 chrX 119399307 119399637 -57574503 + AluSx SINE Alu 2 331 0 4224 197 24 37 chrX 119399637 119400106 -57574034 + L1M2 LINE L1 3679 4153 -2695 269 262 29 48 chrX 119400633 119400736 -57573404 + MIR SINE MIR 116 216 -46 812 145 13 19 chrX 119401720 119401879 -57572261 - L1MB7 LINE L1 -3 6181 6024 283 308 108 15 chrX 119404226 119404356 -57569784 - MIR3 SINE MIR -2 206 65 967 157 10 83 chrX 119405371 119405575 -57568565 - MER5A DNA MER1_type 0 189 1 1583 167 4 4 chrX 119406521 119406766 -57567374 - AluJb SINE Alu -62 250 6 1797 66 0 0 chrX 119406771 119406999 -57567141 - L1P4 LINE L1 -376 5785 5558 3047 234 32 18 chrX 119407011 119407844 -57566296 + L1ME1 LINE L1 5317 6161 -5 2329 119 0 0 chrX 119408058 119408370 -57565770 - AluSq SINE Alu -1 312 1 23 0 0 0 chrX 119408577 119408600 -57565540 + AT_rich Low_complexity Low_complexity 1 23 0 1482 150 0 17 chrX 119408754 119408994 -57565146 - AluJb SINE Alu -13 299 64 339 285 29 51 chrX 119409299 119409436 -57564704 + MIR3 SINE MIR 69 202 -6 228 67 0 0 chrX 119411333 119411363 -57562777 + (TG)n Simple_repeat Simple_repeat 2 31 0 1223 186 99 8 chrX 119412320 119412572 -57561568 + AluJb SINE Alu 1 275 -37 258 105 0 0 chrX 119412577 119412615 -57561525 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 2310 238 48 14 chrX 119412711 119413269 -57560871 + L1MEc LINE L1 32 608 -5788 2270 134 0 42 chrX 119413280 119413661 -57560479 - MER47A DNA MER2_type -1 365 1 429 211 0 0 chrX 119413678 119413773 -57560367 - L1MEc LINE L1 -5660 736 642 2063 232 28 30 chrX 119413792 119414369 -57559771 + L1ME1 LINE L1 5586 6161 -5 3647 68 16 10 chrX 119415438 119415925 -57558215 - L1PA8 LINE L1 0 6172 5683 521 261 62 62 chrX 119416048 119416140 -57558000 - MIR SINE MIR -17 245 154 2291 98 0 0 chrX 119416140 119416437 -57557703 - AluSq SINE Alu -16 297 1 521 261 62 62 chrX 119416437 119416539 -57557601 - MIR SINE MIR -107 155 51 2000 144 0 7 chrX 119418196 119418494 -57555646 - AluJb SINE Alu -16 296 1 519 343 40 51 chrX 119418549 119419045 -57555095 - L2 LINE L2 -6 3266 2772 594 206 16 40 chrX 119419208 119419334 -57554806 - L2 LINE L2 -4 3309 3187 214 274 16 0 chrX 119419699 119419761 -57554379 + GA-rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chrX 119420196 119420233 -57553907 + AT_rich Low_complexity Low_complexity 1 37 0 569 303 38 24 chrX 119421151 119421362 -57552778 - MIR SINE MIR 0 262 49 821 295 180 44 chrX 119421756 119422521 -57551619 + L2 LINE L2 2272 3175 -97 2198 125 0 0 chrX 119422521 119422816 -57551324 + AluSx SINE Alu 1 295 -17 821 295 180 44 chrX 119422816 119422921 -57551219 + L2 LINE L2 3175 3264 -8 237 214 0 54 chrX 119423477 119423533 -57550607 + MLT1K LTR MaLR 190 242 -346 * 389 307 67 107 chrX 119423501 119423546 -57550594 + MLT1K LTR MaLR 142 187 -401 1394 179 52 123 chrX 119423546 119423589 -57550551 + MSTD LTR MaLR 1 45 -351 1487 199 0 18 chrX 119423589 119423871 -57550269 - AluJo SINE Alu -15 297 21 1394 179 52 123 chrX 119423871 119424251 -57549889 + MSTD LTR MaLR 45 394 -2 389 307 67 107 chrX 119424251 119424671 -57549469 + MLT1K LTR MaLR 187 588 0 2197 114 0 0 chrX 119425461 119425758 -57548382 - AluSx SINE Alu -15 297 1 420 237 96 51 chrX 119425951 119426107 -57548033 - MIR SINE MIR -6 256 94 416 262 81 32 chrX 119426584 119426774 -57547366 + L1ME3A LINE L1 5745 5949 -213 591 328 99 16 chrX 119427553 119428050 -57546090 - L1MC4a LINE L1 -1898 5910 5373 21 0 0 0 chrX 119428271 119428292 -57545848 + AT_rich Low_complexity Low_complexity 1 21 0 349 283 35 29 chrX 119428710 119428883 -57545257 - L1ME4a LINE L1 -232 5889 5716 1205 153 15 0 chrX 119429028 119429231 -57544909 + MER33 DNA MER1_type 2 207 -117 665 337 49 11 chrX 119429295 119429660 -57544480 - HAL1b LINE L1 -673 675 297 27 49 0 0 chrX 119429886 119429927 -57544213 + AT_rich Low_complexity Low_complexity 1 41 0 475 309 44 44 chrX 119429979 119430296 -57543844 - L1M4 LINE L1 -3161 2985 2669 338 326 23 29 chrX 119430483 119430658 -57543482 - L1M4 LINE L1 -3742 2404 2231 2343 183 29 48 chrX 119430785 119431300 -57542840 + MLT1D LTR MaLR 1 505 0 916 266 22 68 chrX 119433057 119433335 -57540805 - MER102a DNA MER1_type -3 327 63 192 297 99 22 chrX 119433409 119433500 -57540640 - MIR SINE MIR -121 141 44 * 559 341 22 31 chrX 119433473 119433699 -57540441 + MIR SINE MIR 20 243 -19 534 247 128 41 chrX 119433707 119433926 -57540214 + L2 LINE L2 3076 3313 0 275 264 36 55 chrX 119434381 119434491 -57539649 - MIR SINE MIR -71 191 84 477 236 203 14 chrX 119434898 119435046 -57539094 - MER5B DNA MER1_type 0 178 3 376 206 0 0 chrX 119435821 119435894 -57538246 + U13 snRNA snRNA 30 102 -2 224 30 30 0 chrX 119436307 119436340 -57537800 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 196 322 34 68 chrX 119436574 119436692 -57537448 + L2 LINE L2 3193 3306 -7 339 85 0 0 chrX 119439146 119439193 -57534947 + (CA)n Simple_repeat Simple_repeat 1 47 0 209 252 55 110 chrX 119439627 119439754 -57534386 - L2 LINE L2 -16 3297 3178 235 330 11 11 chrX 119439868 119439956 -57534184 - L2 LINE L2 -218 3054 2967 23 0 0 0 chrX 119440158 119440181 -57533959 + AT_rich Low_complexity Low_complexity 1 23 0 227 235 235 47 chrX 119441382 119441552 -57532588 - L1MC/D LINE L1 -1909 5899 5698 315 216 144 10 chrX 119442417 119442514 -57531626 + MIR3 SINE MIR 92 201 -7 543 327 118 44 chrX 119442624 119442921 -57531219 + L2 LINE L2 2953 3271 -1 1122 339 105 18 chrX 119442989 119443877 -57530263 + L2 LINE L2 2276 3246 -26 2272 112 3 0 chrX 119444043 119444347 -57529793 + AluSq SINE Alu 1 305 -8 1092 304 63 11 chrX 119446857 119447358 -57526782 + L2 LINE L2 2770 3307 -6 428 268 60 127 chrX 119447383 119447865 -57526275 + MLT1K LTR MaLR 139 588 0 196 324 34 54 chrX 119448037 119448185 -57525955 + L2 LINE L2 1516 1660 -1654 783 314 89 45 chrX 119448317 119449012 -57525128 + L2 LINE L2 1705 2430 -884 2291 126 31 25 chrX 119449040 119449397 -57524743 - THE1B LTR MaLR 0 364 6 200 224 0 106 chrX 119449523 119449608 -57524532 + L2 LINE L2 2579 2654 -660 428 291 40 7 chrX 119451893 119452044 -57522096 - L2 LINE L2 -9 3304 3149 204 253 0 25 chrX 119452044 119452123 -57522017 + (TA)n Simple_repeat Simple_repeat 1 77 0 1561 265 144 33 chrX 119452123 119452169 -57521971 - L2 LINE L2 -136 3177 3137 694 183 8 8 chrX 119452169 119452300 -57521840 - MER94 DNA DNA 0 134 4 1561 265 144 33 chrX 119452300 119453014 -57521126 - L2 LINE L2 -176 3137 2343 468 325 21 11 chrX 119453014 119453205 -57520935 - LTR16C LTR ERVL 0 491 299 1743 262 81 8 chrX 119453467 119453986 -57520154 - L2 LINE L2 -877 2437 1881 486 298 156 15 chrX 119454648 119454853 -57519287 + MIR SINE MIR 1 234 -28 2101 94 0 4 chrX 119455822 119456114 -57518026 - AluSq SINE Alu 0 309 19 306 200 328 8 chrX 119456644 119456769 -57517371 - L2 LINE L2 -22 3291 3127 268 254 17 0 chrX 119457404 119457463 -57516677 - L2 LINE L2 0 3272 3213 315 0 0 0 chrX 119458918 119458953 -57515187 + (TA)n Simple_repeat Simple_repeat 2 36 0 292 313 0 0 chrX 119459042 119459109 -57515031 - L2 LINE L2 0 3313 3247 330 26 0 0 chrX 119459614 119459653 -57514487 + (TG)n Simple_repeat Simple_repeat 1 39 0 289 266 62 26 chrX 119461955 119462068 -57512072 + MIR SINE MIR 146 262 0 660 220 58 35 chrX 119462481 119462654 -57511486 - MER5B DNA MER1_type 0 178 2 575 167 5 18 chrX 119462914 119463049 -57511091 - L1M4 LINE L1 -1488 4658 4523 336 83 0 0 chrX 119463063 119463111 -57511029 + (CA)n Simple_repeat Simple_repeat 2 49 0 887 249 10 0 chrX 119463154 119463355 -57510785 + MIR SINE MIR 10 212 -50 222 374 75 9 chrX 119463508 119463615 -57510525 + L2 LINE L2 3121 3234 -38 601 290 22 11 chrX 119463636 119463819 -57510321 + MER117 DNA MER1_type 11 195 -2 237 239 0 0 chrX 119464393 119464439 -57509701 + MIR SINE MIR 210 255 -7 471 63 0 0 chrX 119464461 119464524 -57509616 + (TGGA)n Simple_repeat Simple_repeat 4 66 0 2147 124 17 0 chrX 119464580 119464879 -57509261 + AluSx SINE Alu 1 304 -8 664 238 76 33 chrX 119465890 119466100 -57508040 + MIR SINE MIR 1 219 -43 224 266 62 0 chrX 119466160 119466224 -57507916 - MIR SINE MIR -121 141 74 225 250 0 21 chrX 119466233 119466281 -57507859 + L2 LINE L2 3211 3257 -15 1034 283 66 46 chrX 119466739 119467286 -57506854 + L2 LINE L2 2130 2687 -627 260 331 160 68 chrX 119467446 119467814 -57506326 + L2 LINE L2 2866 3267 -5 2134 122 0 7 chrX 119468638 119468942 -57505198 + AluSx SINE Alu 1 302 -10 205 358 164 31 chrX 119469131 119469545 -57504595 - L2 LINE L2 -646 2668 2200 829 237 40 0 chrX 119469572 119469749 -57504391 - MER5A DNA MER1_type 0 189 6 2118 108 0 0 chrX 119469818 119470143 -57503997 + AluSg SINE Alu 3 327 0 234 0 0 0 chrX 119472346 119472372 -57501768 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 2323 57 0 7 chrX 119472374 119472657 -57501483 - AluY SINE Alu -30 281 1 180 111 0 0 chrX 119472966 119472993 -57501147 + (CATATA)n Simple_repeat Simple_repeat 6 32 0 1885 260 64 21 chrX 119473015 119473549 -57500591 + L2 LINE L2 2183 2739 -575 340 286 33 0 chrX 119473558 119473649 -57500491 + L2 LINE L2 2848 2941 -372 2628 17 0 0 chrX 119473674 119473963 -57500177 + AluY SINE Alu 16 304 -7 642 231 14 81 chrX 119473971 119474192 -57499948 + L2 LINE L2 3108 3313 0 233 319 170 31 chrX 119474676 119475152 -57498988 + L2 LINE L2 2155 2696 -618 30 45 0 0 chrX 119475438 119475482 -57498658 + AT_rich Low_complexity Low_complexity 1 44 0 195 42 0 0 chrX 119475760 119475784 -57498356 + (GA)n Simple_repeat Simple_repeat 1 24 0 976 262 23 12 chrX 119476789 119477045 -57497095 - MIR SINE MIR -2 260 2 363 291 43 26 chrX 119477067 119477184 -57496956 + MIR3 SINE MIR 87 205 -3 216 304 0 0 chrX 119477261 119477317 -57496823 + CT-rich Low_complexity Low_complexity 3 58 0 5710 30 0 0 chrX 119477909 119478577 -57495563 + L1PA5 LINE L1 5487 6154 0 367 268 141 52 chrX 119478741 119479200 -57494940 - L1ME LINE L1 -298 5823 5313 2154 116 0 0 chrX 119479231 119479525 -57494615 + AluSg SINE Alu 1 294 -16 854 220 23 0 chrX 119480164 119480337 -57493803 - MSTD LTR MaLR -2 394 218 5208 79 12 1 chrX 119480337 119481057 -57493083 - L1P LINE L1 -1148 4998 4271 2384 57 63 3 chrX 119481057 119481371 -57492769 + L1PA7 LINE L1 5811 6145 -9 1122 213 23 0 chrX 119481400 119481621 -57492519 - MSTD LTR MaLR -170 226 1 24 0 0 0 chrX 119482167 119482191 -57491949 + AT_rich Low_complexity Low_complexity 1 24 0 33 85 0 0 chrX 119483379 119483461 -57490679 + AT_rich Low_complexity Low_complexity 1 82 0 810 215 105 5 chrX 119483478 119483678 -57490462 - MIR SINE MIR -37 225 6 300 274 94 19 chrX 119484317 119484423 -57489717 + MIR3 SINE MIR 2 115 -93 1524 193 26 26 chrX 119484725 119485108 -57489032 - L1MB8 LINE L1 0 6178 5796 1823 264 38 17 chrX 119485126 119485218 -57488922 - L1M4 LINE L1 -4977 1878 1789 261 0 0 0 chrX 119485218 119485247 -57488893 + (TG)n Simple_repeat Simple_repeat 1 29 0 * 504 0 0 0 chrX 119485246 119485302 -57488838 + (GA)n Simple_repeat Simple_repeat 1 56 0 1823 264 38 17 chrX 119485247 119485871 -57488269 - L1M4 LINE L1 -5066 1789 1203 248 296 49 37 chrX 119486411 119486573 -57487567 - L1M4 LINE L1 -6605 254 91 645 144 199 0 chrX 119486720 119486901 -57487239 + Charlie5 DNA MER1_type 2365 2581 -31 976 235 37 46 chrX 119486907 119487367 -57486773 + L1MC5 LINE L1 7332 7787 -174 834 168 0 0 chrX 119487368 119487499 -57486641 + FLAM_C SINE Alu 1 131 -2 490 185 11 0 chrX 119487629 119487721 -57486419 - Tigger5 DNA MER2_type 0 2323 2231 22 56 0 0 chrX 119487780 119487816 -57486324 + AT_rich Low_complexity Low_complexity 1 36 0 42 77 0 0 chrX 119487858 119487949 -57486191 + AT_rich Low_complexity Low_complexity 1 91 0 390 225 130 14 chrX 119488066 119488204 -57485936 + L1ME4a LINE L1 5964 6117 -4 418 304 82 7 chrX 119488441 119488576 -57485564 - MIR3 SINE MIR -61 147 3 839 10 0 0 chrX 119489150 119489248 -57484892 + L1HS LINE L1 6058 6155 0 198 71 0 0 chrX 119489549 119489577 -57484563 + (A)n Simple_repeat Simple_repeat 1 28 0 216 219 192 14 chrX 119490243 119490316 -57483824 + MIR SINE MIR 118 203 -59 245 273 0 68 chrX 119490610 119490698 -57483442 - MIR SINE MIR -109 153 72 2021 131 24 3 chrX 119490893 119491191 -57482949 - AluSx SINE Alu -6 306 3 22 0 0 0 chrX 119493457 119493479 -57480661 + AT_rich Low_complexity Low_complexity 1 22 0 2187 104 0 0 chrX 119493911 119494218 -57479922 - AluSx SINE Alu 0 309 3 382 296 36 20 chrX 119494571 119494818 -57479322 + L1ME4a LINE L1 5634 5884 -237 378 0 0 0 chrX 119494980 119495022 -57479118 + (TG)n Simple_repeat Simple_repeat 1 42 0 4179 246 79 22 chrX 119495518 119496970 -57477170 + L1M4 LINE L1 3283 4817 -1329 202 319 0 29 chrX 119497085 119497154 -57476986 + L2 LINE L2 3245 3311 -2 196 256 85 61 chrX 119498186 119498268 -57475872 - L2 LINE L2 0 3313 3230 374 79 16 0 chrX 119498760 119498823 -57475317 + (GA)n Simple_repeat Simple_repeat 1 64 0 3839 144 27 8 chrX 119499618 119500257 -57473883 + MER39B LTR ERV1 1 651 -2 22 35 0 0 chrX 119501041 119501070 -57473070 + AT_rich Low_complexity Low_complexity 1 29 0 324 83 0 0 chrX 119501093 119501141 -57472999 + (CA)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrX 119501495 119501517 -57472623 + (T)n Simple_repeat Simple_repeat 1 22 0 252 242 65 0 chrX 119501629 119501691 -57472449 + MER58 DNA MER1_type 2355 2420 0 296 260 104 26 chrX 119501693 119501770 -57472370 - MIR3 SINE MIR -27 181 99 * 1255 321 84 29 chrX 119501768 119502701 -57471439 + L2 LINE L2 2331 3313 0 225 0 0 0 chrX 119503828 119503853 -57470287 + (CA)n Simple_repeat Simple_repeat 1 25 0 209 370 55 71 chrX 119504027 119504338 -57469802 - L2 LINE L2 -25 3247 2942 558 286 50 15 chrX 119505792 119505991 -57468149 - MIR SINE MIR -1 261 56 427 300 95 16 chrX 119506115 119506368 -57467772 - MARNA DNA Mariner -107 479 207 380 255 0 21 chrX 119508651 119508745 -57465395 + MIR3 SINE MIR 111 202 -6 272 149 0 0 chrX 119509014 119509061 -57465079 + MLT1J2 LTR MaLR 374 420 -30 333 0 0 0 chrX 119509131 119509168 -57464972 + (CA)n Simple_repeat Simple_repeat 2 38 0 8573 90 4 2 chrX 119509459 119509477 -57464663 - L1P LINE L1 -841 5305 5289 5088 65 6 0 chrX 119509477 119510144 -57463996 - L1PA7 LINE L1 -6 6148 5478 8573 90 4 2 chrX 119510144 119511321 -57462819 - L1P LINE L1 -857 5289 4108 291 382 30 15 chrX 119511610 119511741 -57462399 - MIR3 SINE MIR -50 158 26 352 209 181 0 chrX 119512192 119512297 -57461843 + MER53 DNA DNA 1 124 -65 24 67 0 0 chrX 119512935 119512980 -57461160 + AT_rich Low_complexity Low_complexity 1 45 0 201 217 0 43 chrX 119513267 119513313 -57460827 - MIR SINE MIR -111 151 108 182 261 0 62 chrX 119514331 119514396 -57459744 - MIR SINE MIR -123 139 79 27711 136 13 35 chrX 119515138 119516672 -57457468 - L1PA8 LINE L1 -1 6486 4919 2390 67 0 0 chrX 119516672 119516969 -57457171 - AluY SINE Alu -14 297 1 27711 136 13 35 chrX 119516969 119521907 -57452233 - L1PA8 LINE L1 -1568 4919 10 333 0 0 0 chrX 119522057 119522094 -57452046 + (CA)n Simple_repeat Simple_repeat 2 38 0 623 215 40 13 chrX 119522119 119522268 -57451872 - MER103 DNA DNA -13 153 1 384 22 0 0 chrX 119522271 119522316 -57451824 + (TG)n Simple_repeat Simple_repeat 2 46 0 192 339 0 0 chrX 119522507 119522566 -57451574 + MIR SINE MIR 50 108 -100 301 257 137 16 chrX 119522710 119522893 -57451247 + L1MC5 LINE L1 7709 7913 -48 780 266 11 0 chrX 119523172 119523356 -57450784 + MER5A DNA MER1_type 2 187 -2 449 291 50 64 chrX 119525286 119525427 -57448713 - L2 LINE L2 0 3272 3134 396 0 0 0 chrX 119525528 119525572 -57448568 + (TG)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chrX 119525820 119525855 -57448285 + AT_rich Low_complexity Low_complexity 1 35 0 47 33 0 0 chrX 119526611 119526672 -57447468 + AT_rich Low_complexity Low_complexity 1 61 0 321 240 16 85 chrX 119526943 119527072 -57447068 + MIR SINE MIR 46 165 -97 233 167 21 0 chrX 119527121 119527169 -57446971 + (TAA)n Simple_repeat Simple_repeat 3 51 0 745 291 57 54 chrX 119527305 119527656 -57446484 + L2 LINE L2 2962 3313 0 27 0 0 0 chrX 119527804 119527831 -57446309 + AT_rich Low_complexity Low_complexity 1 27 0 1462 215 30 24 chrX 119528854 119529193 -57444947 - MER58B DNA MER1_type 0 341 1 233 162 0 0 chrX 119529317 119529354 -57444786 - L2 LINE L2 0 3313 3277 1775 134 68 44 chrX 119530375 119530741 -57443399 + THE1C LTR MaLR 1 375 0 5173 125 46 5 chrX 119531077 119531635 -57442505 + L1PB4 LINE L1 5203 5813 -343 353 75 19 0 chrX 119531635 119531688 -57442452 + (CA)n Simple_repeat Simple_repeat 2 55 0 5173 125 46 5 chrX 119531688 119532044 -57442096 + L1PB4 LINE L1 5813 6153 -3 2188 279 61 53 chrX 119533088 119534798 -57439342 + L1MC/D LINE L1 2873 4597 -1549 1258 64 0 0 chrX 119534886 119535043 -57439097 - AluSc SINE Alu 0 309 153 676 342 75 16 chrX 119535073 119535512 -57438628 + L1MC/D LINE L1 5301 5765 -2043 2084 110 23 0 chrX 119535669 119535978 -57438162 + L1PA13 LINE L1 5845 6160 -3 358 310 8 47 chrX 119536742 119536871 -57437269 - MIR SINE MIR -119 143 20 25 40 0 20 chrX 119538224 119538239 -57435901 + AT_rich Low_complexity Low_complexity 1 15 -34 1874 137 63 3 chrX 119538239 119538574 -57435566 - L1PA16 LINE L1 0 6166 5812 25 40 0 20 chrX 119538574 119538608 -57435532 + AT_rich Low_complexity Low_complexity 15 49 0 764 83 16 16 chrX 119538779 119538900 -57435240 - L1PA11 LINE L1 -2 6172 6052 191 326 0 0 chrX 119539383 119539429 -57434711 + L2 LINE L2 2595 2640 -674 2258 108 0 0 chrX 119539457 119539753 -57434387 - AluSq SINE Alu -17 296 1 408 309 60 12 chrX 119540257 119540425 -57433715 + MER20B DNA MER1_type 1 176 -607 184 333 35 35 chrX 119540571 119540658 -57433482 + L2 LINE L2 3176 3262 -10 412 296 44 2 chrX 119541280 119541428 -57432712 - MIR SINE MIR -58 150 35 230 299 161 15 chrX 119544249 119544386 -57429754 - MIR SINE MIR 0 262 106 291 409 9 5 chrX 119544892 119545105 -57429035 - L3 LINE CR1 -209 1368 1155 707 246 62 36 chrX 119545563 119545787 -57428353 + MIR SINE MIR 29 258 -4 250 317 49 57 chrX 119546247 119546370 -57427770 - MIR SINE MIR -55 153 32 693 201 58 40 chrX 119547464 119547638 -57426502 + MER69A DNA AcHobo 1 177 0 193 200 25 0 chrX 119548853 119548893 -57425247 + L3b LINE CR1 1538 1578 -5 7833 12 1 0 chrX 119550330 119551520 -57422620 + L1PA2 LINE L1 5024 6214 0 1747 193 0 13 chrX 119551589 119551905 -57422235 + AluJo SINE Alu 1 312 0 303 239 33 76 chrX 119552157 119552225 -57421915 - L1PA15-16 LINE L1 -5719 1130 1065 1556 150 88 28 chrX 119552225 119552578 -57421562 - THE1C LTR MaLR -1 374 1 303 239 33 76 chrX 119552578 119552601 -57421539 - L1PA15-16 LINE L1 -5784 1065 1043 22 35 0 0 chrX 119553144 119553173 -57420967 + AT_rich Low_complexity Low_complexity 1 29 0 498 75 0 0 chrX 119554104 119554171 -57419969 + (TG)n Simple_repeat Simple_repeat 2 68 0 1075 155 11 6 chrX 119555535 119555709 -57418431 - FAM SINE Alu 0 175 1 634 193 45 59 chrX 119555836 119556038 -57418102 + L1MB8 LINE L1 5949 6147 -31 629 254 63 68 chrX 119556098 119556350 -57417790 + MIR SINE MIR 12 262 0 3209 202 118 7 chrX 119556366 119557248 -57416892 - L1MB4 LINE L1 -3 6177 5197 225 0 0 0 chrX 119557437 119557462 -57416678 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5712 32 0 0 chrX 119557462 119558138 -57416002 - L1PA4 LINE L1 -18 6137 5462 10487 20 5 2 chrX 119558138 119559429 -57414711 + L1PA4 LINE L1 4147 5442 -712 31 0 0 0 chrX 119559953 119559984 -57414156 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chrX 119560148 119560173 -57413967 + AT_rich Low_complexity Low_complexity 1 25 0 799 131 75 12 chrX 119560177 119560337 -57413803 - L1MA9 LINE L1 -8 6304 6135 305 262 0 4 chrX 119560591 119560715 -57413425 + MIR SINE MIR 49 212 -50 926 280 8 4 chrX 119560978 119561221 -57412919 - MIR SINE MIR -10 252 9 225 94 0 0 chrX 119561221 119561253 -57412887 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1387 132 112 12 chrX 119561475 119561717 -57412423 + MSTA LTR MaLR 163 428 0 438 266 9 9 chrX 119562496 119562609 -57411531 - MIR SINE MIR -103 159 47 346 295 76 0 chrX 119562760 119562865 -57411275 + L2 LINE L2 3201 3313 0 639 319 79 37 chrX 119563971 119564425 -57409715 + MARNA DNA Mariner 48 520 -66 219 69 0 0 chrX 119564633 119564662 -57409478 + (CA)n Simple_repeat Simple_repeat 2 30 0 268 289 22 11 chrX 119564690 119564780 -57409360 + GA-rich Low_complexity Low_complexity 3 93 0 361 296 47 23 chrX 119565303 119565475 -57408665 + L1MC4a LINE L1 5156 5331 -815 561 348 85 22 chrX 119565503 119565997 -57408143 + L1MC4a LINE L1 5377 5901 -1907 937 184 74 14 chrX 119566141 119566271 -57407869 - L1MB8 LINE L1 -1 6177 6027 234 0 0 0 chrX 119566271 119566297 -57407843 + (CA)n Simple_repeat Simple_repeat 1 26 0 937 184 74 14 chrX 119566297 119566383 -57407757 - L1MB8 LINE L1 -151 6027 5948 505 125 34 0 chrX 119566508 119566596 -57407544 + MLT2D LTR ERVL 1 91 -323 1087 215 53 64 chrX 119566626 119567003 -57407137 - L1MA9 LINE L1 -46 6266 5894 816 192 26 0 chrX 119567001 119567157 -57406983 + L1MA9 LINE L1 5741 5900 -404 * 1086 202 153 11 chrX 119567160 119567442 -57406698 + MLT2D LTR ERVL 73 394 -20 284 100 9 28 chrX 119567448 119567465 -57406675 + MLT2C1 LTR ERVL 357 373 -24 288 0 0 0 chrX 119567465 119567497 -57406643 + (CA)n Simple_repeat Simple_repeat 1 32 0 284 100 9 28 chrX 119567497 119567538 -57406602 + MLT2C1 LTR ERVL 373 397 0 415 260 0 10 chrX 119567548 119567644 -57406496 - MIR3 SINE MIR -17 191 97 21 57 0 0 chrX 119567794 119567829 -57406311 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 119568281 119568303 -57405837 + AT_rich Low_complexity Low_complexity 1 22 0 231 302 0 0 chrX 119568519 119568572 -57405568 - L2 LINE L2 0 3272 3220 1526 128 55 0 chrX 119568920 119569155 -57404985 + AluSq SINE Alu 3 250 -63 697 296 45 33 chrX 119569268 119569511 -57404629 + MIR SINE MIR 16 261 -1 818 328 171 5 chrX 119570055 119570500 -57403640 + L3 LINE CR1 301 819 -758 8024 117 16 48 chrX 119570501 119570654 -57403486 + HSMAR2 DNA Mariner 1 157 -1145 7586 20 5 1 chrX 119570654 119571604 -57402536 + L1PA4 LINE L1 5200 6153 -2 8024 117 16 48 chrX 119571604 119571965 -57402175 + HSMAR2 DNA Mariner 157 528 -774 1479 85 10 5 chrX 119571965 119572166 -57401974 - AluY SINE Alu -87 224 23 8024 117 16 48 chrX 119572166 119572994 -57401146 + HSMAR2 DNA Mariner 528 1301 -1 764 308 90 21 chrX 119572997 119573332 -57400808 + L3 LINE CR1 819 1176 -401 313 274 11 32 chrX 119573831 119573926 -57400214 + MIR3 SINE MIR 111 203 -5 32 0 0 0 chrX 119573936 119573968 -57400172 + AT_rich Low_complexity Low_complexity 1 32 0 233 402 31 26 chrX 119575993 119576222 -57397918 - L2 LINE L2 -213 3059 2830 2656 175 35 9 chrX 119576295 119576832 -57397308 - L1PB4 LINE L1 0 6156 5606 1517 115 0 13 chrX 119576832 119577065 -57397075 + L1PA8 LINE L1 5940 6170 -2 747 161 77 0 chrX 119577075 119577218 -57396922 - L1PB4 LINE L1 -538 5618 5465 1184 189 125 8 chrX 119577222 119577470 -57396670 + AluJo SINE Alu 6 282 -30 234 0 0 0 chrX 119577474 119577500 -57396640 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1305 125 28 0 chrX 119577500 119577782 -57396358 - L1PB4 LINE L1 -698 5468 5178 320 275 12 0 chrX 119577884 119577964 -57396176 + MIR SINE MIR 61 141 -121 509 209 253 66 chrX 119577964 119578237 -57395903 + L3 LINE CR1 1243 1566 -11 274 330 70 23 chrX 119578234 119578449 -57395691 - L3 LINE CR1 -286 1291 1067 * 25 31 0 0 chrX 119579156 119579188 -57394952 + AT_rich Low_complexity Low_complexity 1 32 0 581 337 0 32 chrX 119579219 119579409 -57394731 - MIR3 SINE MIR -9 199 16 383 188 59 0 chrX 119579909 119579994 -57394146 + L1PA12 LINE L1 6066 6155 -13 23 0 0 0 chrX 119579994 119580017 -57394123 + AT_rich Low_complexity Low_complexity 1 23 0 231 146 0 0 chrX 119581680 119581721 -57392419 + (CATAC)n Simple_repeat Simple_repeat 3 43 0 190 294 88 75 chrX 119582032 119582192 -57391948 + L2 LINE L2 2902 3063 -209 2276 193 38 54 chrX 119582246 119582800 -57391340 - L1MB7 LINE L1 -11 6173 5629 597 195 16 8 chrX 119582803 119582926 -57391214 - L1MB8 LINE L1 -34 6144 6021 310 290 186 8 chrX 119582945 119583069 -57391071 - MIR SINE MIR -79 183 38 203 282 45 64 chrX 119583795 119583951 -57390189 + MIR3 SINE MIR 33 185 -23 25 31 0 0 chrX 119584467 119584499 -57389641 + AT_rich Low_complexity Low_complexity 1 32 0 185 307 0 53 chrX 119585670 119585745 -57388395 + MIR SINE MIR 85 155 -107 711 290 63 48 chrX 119586121 119586373 -57387767 - MIR SINE MIR -5 257 2 435 143 12 60 chrX 119587356 119587440 -57386700 + MER5A DNA MER1_type 9 88 -101 23 33 0 0 chrX 119587499 119587529 -57386611 + AT_rich Low_complexity Low_complexity 1 30 0 278 239 51 18 chrX 119587736 119587882 -57386258 - MIR SINE MIR -1 261 66 27 0 0 0 chrX 119587908 119587935 -57386205 + AT_rich Low_complexity Low_complexity 1 27 0 458 288 36 0 chrX 119588358 119588469 -57385671 + L2 LINE L2 3199 3313 0 1464 307 57 47 chrX 119588514 119588892 -57385248 + L2 LINE L2 2154 2527 -786 2744 165 36 30 chrX 119588892 119589449 -57384691 + L1PB4 LINE L1 5596 6155 -1 1464 307 57 47 chrX 119589449 119590072 -57384068 + L2 LINE L2 2527 3171 -142 1275 99 21 0 chrX 119590072 119590263 -57383877 - L1MA3 LINE L1 0 6305 6111 1464 307 57 47 chrX 119590263 119590408 -57383732 + L2 LINE L2 3171 3313 0 304 276 11 11 chrX 119591532 119591619 -57382521 - L2 LINE L2 0 3313 3227 317 263 63 17 chrX 119591822 119591996 -57382144 - MIR SINE MIR 0 262 34 183 360 53 9 chrX 119592097 119592211 -57381929 - L2 LINE L2 -1231 2083 1965 740 314 22 14 chrX 119592516 119592873 -57381267 - L1ME4a LINE L1 -294 5827 5468 230 331 16 0 chrX 119593044 119593165 -57380975 - L1ME4a LINE L1 -905 5241 5119 22 0 0 0 chrX 119593415 119593437 -57380703 + AT_rich Low_complexity Low_complexity 1 22 0 325 259 21 81 chrX 119593712 119593948 -57380192 - L1ME4a LINE L1 -1601 4545 4324 28 48 0 0 chrX 119594559 119594601 -57379539 + AT_rich Low_complexity Low_complexity 1 42 0 4960 154 33 25 chrX 119594885 119595856 -57378284 + L1MC3 LINE L1 6799 7777 -8 24 0 0 0 chrX 119595856 119595880 -57378260 + AT_rich Low_complexity Low_complexity 1 24 0 617 154 18 9 chrX 119596024 119596134 -57378006 + L1PB4 LINE L1 6039 6149 -7 191 208 21 21 chrX 119596774 119596822 -57377318 + L2 LINE L2 3266 3313 0 279 342 116 71 chrX 119597473 119597647 -57376493 - L2 LINE L2 0 3272 3107 1719 167 0 30 chrX 119597647 119597947 -57376193 + AluJo SINE Alu 1 291 -21 279 342 116 71 chrX 119597947 119598420 -57375720 - L2 LINE L2 -165 3107 2578 2436 75 3 7 chrX 119598989 119599295 -57374845 + AluSc SINE Alu 1 305 -4 23 0 0 0 chrX 119599436 119599459 -57374681 + AT_rich Low_complexity Low_complexity 1 23 0 344 417 36 0 chrX 119600338 119600530 -57373610 + MIR3 SINE MIR 3 201 -7 408 302 41 47 chrX 119601646 119601818 -57372322 - L2 LINE L2 0 3272 3102 2028 205 22 54 chrX 119601985 119602487 -57371653 + MLT1D LTR MaLR 20 505 0 595 243 33 71 chrX 119603150 119603360 -57370780 + MIR SINE MIR 61 262 0 38 22 0 0 chrX 119603881 119603926 -57370214 + AT_rich Low_complexity Low_complexity 1 45 0 677 154 51 8 chrX 119603926 119604043 -57370097 - FLAM_C SINE Alu -9 124 3 1128 239 7 29 chrX 119604071 119604380 -57369760 + AluSq SINE Alu 2 303 0 363 343 37 37 chrX 119604397 119604597 -57369543 - L2 LINE L2 -569 2745 2543 1138 173 5 0 chrX 119604597 119604782 -57369358 - MER5A DNA MER1_type 0 189 4 363 343 37 37 chrX 119604782 119604852 -57369288 - L2 LINE L2 -770 2544 2475 588 179 0 9 chrX 119604971 119605083 -57369057 - FLAM_C SINE Alu -7 136 26 184 309 0 15 chrX 119605252 119605320 -57368820 - L2 LINE L2 -939 2375 2309 908 199 6 0 chrX 119605454 119605615 -57368525 - FRAM SINE Alu -16 160 1 299 213 100 12 chrX 119608557 119608637 -57365503 - L2 LINE L2 0 3272 3186 22 0 0 0 chrX 119609000 119609022 -57365118 + AT_rich Low_complexity Low_complexity 1 22 0 645 298 5 11 chrX 119609420 119609608 -57364532 - MIR SINE MIR -20 242 56 336 395 72 21 chrX 119610105 119610439 -57363701 + L2 LINE L2 2155 2505 -809 426 277 27 0 chrX 119610890 119611002 -57363138 + L2 LINE L2 3199 3313 0 344 278 32 24 chrX 119612040 119612166 -57361974 + MIR3 SINE MIR 71 197 -11 2041 132 2 97 chrX 119612608 119613011 -57361129 - MLT1A1 LTR MaLR 0 365 1 201 39 0 0 chrX 119615432 119615458 -57358682 + (CA)n Simple_repeat Simple_repeat 1 26 0 1174 286 95 34 chrX 119615463 119616020 -57358120 - MLT1E LTR MaLR -2 591 1 268 258 32 0 chrX 119616136 119616198 -57357942 - L2 LINE L2 -3 3269 3206 249 98 0 0 chrX 119616386 119616427 -57357713 + (CA)n Simple_repeat Simple_repeat 2 42 0 238 386 0 20 chrX 119617951 119618052 -57356088 + MIR SINE MIR 31 129 -79 241 260 0 0 chrX 119619791 119619841 -57354299 - L2 LINE L2 -13 3300 3251 30 27 0 0 chrX 119620669 119620706 -57353434 + AT_rich Low_complexity Low_complexity 1 37 0 917 328 138 34 chrX 119621319 119622059 -57352081 - L2 LINE L2 -661 2653 1837 812 229 52 41 chrX 119622278 119622549 -57351591 - MLT1L LTR MaLR -222 393 120 3426 161 21 59 chrX 119622627 119622991 -57351149 - L1MB7 LINE L1 -13 6171 5851 1190 193 106 6 chrX 119622991 119623302 -57350838 - MER2 DNA MER2_type 0 344 3 3426 161 21 59 chrX 119623302 119623712 -57350428 - L1MB7 LINE L1 -333 5851 5427 2244 92 0 64 chrX 119623869 119624197 -57349943 - AluSx SINE Alu -5 307 1 2111 137 0 6 chrX 119624207 119624521 -57349619 - AluSx SINE Alu 0 312 1 21 71 0 0 chrX 119624878 119624920 -57349220 + AT_rich Low_complexity Low_complexity 1 42 0 232 275 0 25 chrX 119625504 119625584 -57348556 + MLT1L LTR MaLR 6 83 -532 193 269 17 109 chrX 119625683 119625802 -57348338 - MER5B DNA MER1_type -54 124 17 2318 104 0 0 chrX 119626008 119626316 -57347824 - AluSc SINE Alu -1 308 1 21 36 0 0 chrX 119626321 119626349 -57347791 + AT_rich Low_complexity Low_complexity 1 28 0 791 237 17 11 chrX 119627223 119627400 -57346740 - MER5B DNA MER1_type 0 178 1 378 276 38 9 chrX 119627408 119627513 -57346627 + L2 LINE L2 3199 3306 -7 3892 125 5 8 chrX 119627590 119628184 -57345956 + L1PA15 LINE L1 5566 6157 -8 4165 99 93 105 chrX 119628412 119629860 -57344280 + pTR5 LTR ERV1 66 2438 0 207 0 0 0 chrX 119631053 119631076 -57343064 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1891 147 20 10 chrX 119632170 119632463 -57341677 - AluSx SINE Alu -14 298 3 1073 144 70 51 chrX 119632546 119632761 -57341379 - MER20 DNA MER1_type 0 219 1 199 95 48 32 chrX 119634301 119634364 -57339776 + CT-rich Low_complexity Low_complexity 3 66 0 809 349 97 42 chrX 119634892 119636038 -57338102 - L2 LINE L2 0 3272 2069 402 219 24 12 chrX 119637180 119637349 -57336791 + (TA)n Simple_repeat Simple_repeat 2 172 0 183 184 0 0 chrX 119637397 119637435 -57336705 + (TATG)n Simple_repeat Simple_repeat 2 39 0 369 200 114 76 chrX 119639362 119639391 -57334749 - L2 LINE L2 0 3313 3287 2230 75 7 33 chrX 119639391 119639697 -57334443 + AluSx SINE Alu 1 298 -14 369 200 114 76 chrX 119639697 119639772 -57334368 - L2 LINE L2 -26 3287 3205 25 51 0 0 chrX 119640189 119640228 -57333912 + AT_rich Low_complexity Low_complexity 1 39 0 726 287 28 28 chrX 119642349 119642603 -57331537 - MIR SINE MIR -6 256 3 3359 87 8 18 chrX 119643698 119644202 -57329938 - L1MA4A LINE L1 -12 6291 5793 423 92 0 0 chrX 119644515 119644580 -57329560 + (TC)n Simple_repeat Simple_repeat 1 65 0 306 0 0 0 chrX 119644581 119644615 -57329525 + (TG)n Simple_repeat Simple_repeat 2 35 0 714 261 35 50 chrX 119645122 119645405 -57328735 + L2 LINE L2 3034 3312 -1 1120 221 98 4 chrX 119645622 119645898 -57328242 - L1ME3A LINE L1 -22 6148 5847 495 337 30 56 chrX 119647198 119647465 -57326675 - MIR SINE MIR 0 262 3 1067 199 186 7 chrX 119647493 119647784 -57326356 + MER2 DNA MER2_type 1 343 -1 684 314 2 19 chrX 119647877 119648090 -57326050 + MIR SINE MIR 34 244 -18 25 0 0 0 chrX 119650630 119650655 -57323485 + AT_rich Low_complexity Low_complexity 1 25 0 2108 92 0 46 chrX 119651137 119651462 -57322678 + AluY SINE Alu 1 310 -1 447 263 73 67 chrX 119651513 119651692 -57322448 - MIR SINE MIR -73 189 10 * 693 260 26 48 chrX 119651611 119651838 -57322302 + MIR SINE MIR 8 229 -33 869 245 129 39 chrX 119653395 119653681 -57320459 + L2 LINE L2 2999 3310 -3 22 35 0 0 chrX 119653702 119653731 -57320409 + AT_rich Low_complexity Low_complexity 1 29 0 29 104 0 0 chrX 119653801 119653907 -57320233 + AT_rich Low_complexity Low_complexity 1 106 0 245 327 9 53 chrX 119654247 119654360 -57319780 + MIR SINE MIR 73 180 -82 4244 107 33 3 chrX 119654461 119655123 -57319017 + L1MA3 LINE L1 5624 6305 0 1463 217 15 73 chrX 119655169 119655565 -57318575 - MLT1A2 LTR MaLR 0 374 2 234 213 53 53 chrX 119655596 119655671 -57318469 - MIR SINE MIR -1 261 187 910 273 140 0 chrX 119655718 119655982 -57318158 - MLT1J2 LTR MaLR -116 334 34 431 263 224 0 chrX 119656021 119656173 -57317967 - MIR SINE MIR -69 193 8 211 182 0 0 chrX 119656301 119656334 -57317806 + polypurine Low_complexity Low_complexity 3 35 0 23 54 0 0 chrX 119659066 119659103 -57315037 + AT_rich Low_complexity Low_complexity 1 37 0 503 274 97 12 chrX 119660306 119660502 -57313638 - MIR SINE MIR -11 251 41 1739 170 38 0 chrX 119660813 119660978 -57313162 - AluJb SINE Alu -13 299 117 275 0 0 28 chrX 119660978 119661014 -57313126 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 1739 170 38 0 chrX 119661014 119661136 -57313004 - AluJb SINE Alu -195 117 1 21 0 0 0 chrX 119661589 119661610 -57312530 + AT_rich Low_complexity Low_complexity 1 21 0 409 216 114 42 chrX 119661689 119661856 -57312284 + MIR SINE MIR 81 259 -3 1870 138 3 17 chrX 119662353 119662649 -57311491 - AluJo SINE Alu -20 292 1 1355 92 34 5 chrX 119663909 119664115 -57310025 + L1PA10 LINE L1 5941 6152 -16 556 116 231 0 chrX 119665108 119665229 -57308911 + L1MA6 LINE L1 6152 6300 0 892 271 0 28 chrX 119665361 119665645 -57308495 - L1ME2 LINE L1 -27 6137 5862 1326 176 44 13 chrX 119665671 119666049 -57308091 - L1ME2 LINE L1 -668 5498 5107 3962 132 18 10 chrX 119666057 119666732 -57307408 - L1PB4 LINE L1 -1 6155 5476 22094 83 12 7 chrX 119666738 119667407 -57306733 - L1PA7 LINE L1 -13 6141 5477 2125 136 0 3 chrX 119667407 119667709 -57306431 - AluSg SINE Alu -9 301 1 22094 83 12 7 chrX 119667709 119670993 -57303147 - L1PA7 LINE L1 -677 5477 2170 533 105 11 21 chrX 119670978 119671073 -57303067 - L1PB4 LINE L1 -664 5492 5399 * 1789 236 143 11 chrX 119671077 119671705 -57302435 - L1ME2 LINE L1 -1026 5120 4410 21 0 0 0 chrX 119671711 119671732 -57302408 + AT_rich Low_complexity Low_complexity 1 21 0 221 360 81 16 chrX 119672075 119672261 -57301879 + L2 LINE L2 2174 2371 -943 345 24 0 0 chrX 119672262 119672304 -57301836 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 284 81 0 chrX 119672591 119672665 -57301475 + L2 LINE L2 2445 2524 -790 729 330 8 15 chrX 119672667 119672928 -57301212 + MIR SINE MIR 2 260 -2 207 0 0 0 chrX 119673000 119673023 -57301117 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 624 198 0 63 chrX 119673026 119673152 -57300988 - FLAM_C SINE Alu -25 118 1 441 280 48 8 chrX 119673379 119673504 -57300636 - L2 LINE L2 -1 3312 3183 619 302 30 35 chrX 119674146 119674378 -57299762 + MIR SINE MIR 29 259 -3 251 364 43 16 chrX 119674424 119674611 -57299529 + L2 LINE L2 2642 2833 -481 1269 82 0 22 chrX 119674892 119675076 -57299064 + L1PA11 LINE L1 5991 6170 -4 236 260 0 0 chrX 119675214 119675264 -57298876 + (TG)n Simple_repeat Simple_repeat 2 51 0 269 349 20 27 chrX 119675387 119675533 -57298607 - L2 LINE L2 -290 2982 2838 235 292 31 0 chrX 119675588 119675653 -57298487 - MIR SINE MIR 0 262 196 273 210 0 0 chrX 119675656 119675718 -57298422 + (TA)n Simple_repeat Simple_repeat 1 62 0 1848 109 90 0 chrX 119675734 119676000 -57298140 - AluSx SINE Alu -22 290 1 483 267 48 20 chrX 119676014 119676160 -57297980 - MIR SINE MIR -88 174 25 227 329 103 52 chrX 119676186 119676611 -57297529 - L2 LINE L2 -737 2577 2131 2432 74 0 0 chrX 119677730 119678027 -57296113 + AluY SINE Alu 1 297 -14 991 325 46 32 chrX 119678028 119678599 -57295541 - L2 LINE L2 -2 3311 2737 180 276 126 23 chrX 119679315 119679402 -57294738 - MIR SINE MIR -57 205 110 461 300 100 23 chrX 119680100 119680320 -57293820 - MIR SINE MIR -6 256 20 1963 126 17 23 chrX 119680433 119680735 -57293405 - AluSx SINE Alu -12 300 1 505 167 83 0 chrX 119683190 119683298 -57290842 - MER103 DNA DNA -47 119 3 251 329 146 0 chrX 119683319 119683456 -57290684 - MIR SINE MIR -43 219 63 204 282 176 46 chrX 119683464 119683595 -57290545 + MIR SINE MIR 49 196 -66 185 35 69 0 chrX 119684271 119684300 -57289840 + (CATA)n Simple_repeat Simple_repeat 2 32 0 199 286 18 0 chrX 119686052 119686108 -57288032 - L2 LINE L2 0 3313 3257 2462 66 0 3 chrX 119686153 119686457 -57287683 - AluY SINE Alu -8 303 1 260 295 26 0 chrX 119687660 119687738 -57286402 - L3 LINE CR1 -3 1574 1495 261 171 118 66 chrX 119687896 119687972 -57286168 - MER103 DNA DNA -84 82 3 502 326 138 20 chrX 119688037 119688393 -57285747 - L3 LINE CR1 -557 1020 623 683 303 4 38 chrX 119689275 119689513 -57284627 + MIR SINE MIR 21 250 -12 257 351 86 20 chrX 119690277 119690428 -57283712 + MER91A DNA MER1_type 1 161 -35 1164 95 12 0 chrX 119691653 119691822 -57282318 - L1P4 LINE L1 -389 5777 5607 810 20 10 0 chrX 119691993 119692139 -57282001 + L1PA4 LINE L1 6052 6198 0 1279 212 93 4 chrX 119692540 119692809 -57281331 - AluJo SINE Alu -19 293 1 204 40 0 0 chrX 119693138 119693163 -57280977 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 3520 129 31 0 chrX 119693419 119693963 -57280177 + L1MA8 LINE L1 5329 5889 -402 253 282 39 13 chrX 119694749 119694827 -57279313 - MLT1I LTR MaLR 0 409 330 317 340 44 25 chrX 119694971 119695174 -57278966 - MLT1I LTR MaLR -202 207 1 434 289 55 60 chrX 119695374 119695575 -57278565 + MIR SINE MIR 49 248 -14 455 282 141 9 chrX 119695667 119695887 -57278253 + MIR SINE MIR 14 262 0 289 260 14 14 chrX 119695976 119696049 -57278091 + MER5A DNA MER1_type 4 76 -113 234 250 303 13 chrX 119696088 119696164 -57277976 + MER5A DNA MER1_type 63 160 -29 2709 113 8 0 chrX 119696175 119696547 -57277593 - MSTA LTR MaLR -53 375 1 328 373 67 0 chrX 119696547 119696676 -57277464 + MIR3 SINE MIR 31 168 -40 283 279 10 48 chrX 119696676 119696795 -57277345 - MER5B DNA MER1_type -3 175 72 271 298 12 0 chrX 119696991 119697075 -57277065 + MIR SINE MIR 167 251 -11 2254 93 10 0 chrX 119698318 119698608 -57275532 - AluSx SINE Alu -19 293 1 342 281 0 0 chrX 119698633 119698715 -57275425 - L2 LINE L2 -5 3308 3227 1279 172 0 39 chrX 119698724 119698957 -57275183 + AluJb SINE Alu 87 310 -2 2163 159 62 5 chrX 119699165 119699567 -57274573 + MSTB LTR MaLR 2 426 0 279 0 0 0 chrX 119699608 119699639 -57274501 + (TA)n Simple_repeat Simple_repeat 1 31 0 205 152 0 0 chrX 119699965 119699998 -57274142 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 342 278 157 26 chrX 119700000 119700115 -57274025 - L2 LINE L2 0 3272 3143 3049 149 35 22 chrX 119700419 119700968 -57273172 - MER21A LTR ERV1 0 931 376 1341 127 35 9 chrX 119700973 119701202 -57272938 - MER21A LTR ERV1 -667 264 30 329 250 21 31 chrX 119701220 119701316 -57272824 + L1MC4 LINE L1 6614 6708 -1334 305 260 0 73 chrX 119701240 119701336 -57272804 - L1MC4 LINE L1 -1339 6703 6615 * 212 143 83 0 chrX 119701340 119701424 -57272716 + (TA)n Simple_repeat Simple_repeat 1 91 0 1744 193 85 44 chrX 119702253 119702734 -57271406 - MLT1D LTR MaLR -2 503 3 829 191 74 31 chrX 119702759 119703015 -57271125 + ORSL DNA AcHobo 9 275 0 2121 120 3 7 chrX 119703532 119703832 -57270308 - AluSq SINE Alu -14 299 1 824 251 9 42 chrX 119704419 119704634 -57269506 - MIR SINE MIR -54 208 1 768 174 80 171 chrX 119704896 119705053 -57269087 + LTR8 LTR ERV1 1 90 -601 2000 126 0 39 chrX 119705053 119705363 -57268777 + AluJb SINE Alu 1 298 -14 768 174 80 171 chrX 119705363 119705492 -57268648 + LTR8 LTR ERV1 90 229 -462 1163 188 55 123 chrX 119705591 119706064 -57268076 + LTR8A LTR ERV1 287 727 0 644 350 101 16 chrX 119706480 119706857 -57267283 - L3 LINE CR1 -9 1568 1160 290 360 18 62 chrX 119707637 119707862 -57266278 + L2 LINE L2 322 536 -2778 251 330 287 4 chrX 119708152 119708413 -57265727 + L2 LINE L2 1846 2180 -1134 2368 99 0 0 chrX 119708963 119709265 -57264875 + AluSg SINE Alu 1 302 -8 467 208 88 28 chrX 119709502 119709686 -57264454 + MLT1E1 LTR MaLR 1 257 -397 455 118 0 0 chrX 119709764 119709832 -57264308 + LTR53 LTR ERVL 452 519 0 2690 107 38 19 chrX 119709969 119710388 -57263752 - MSTA LTR MaLR 0 428 2 308 299 47 45 chrX 119710506 119710654 -57263486 - MER5A DNA MER1_type -28 161 2 3197 134 21 58 chrX 119710673 119711305 -57262835 + LTR9 LTR ERV1 5 612 0 417 206 30 61 chrX 119711359 119711490 -57262650 - MLT1E3 LTR MaLR -198 426 300 3094 170 26 0 chrX 119711614 119712120 -57262020 - LTR53 LTR ERVL 0 519 1 1924 128 49 3 chrX 119712322 119712610 -57261530 - AluJb SINE Alu -6 306 6 21 0 0 0 chrX 119712617 119712638 -57261502 + AT_rich Low_complexity Low_complexity 1 21 0 597 200 78 0 chrX 119712640 119712755 -57261385 + FLAM_C SINE Alu 1 124 -19 32 43 0 0 chrX 119712755 119712801 -57261339 + AT_rich Low_complexity Low_complexity 1 46 0 240 163 0 0 chrX 119713073 119713116 -57261024 + CT-rich Low_complexity Low_complexity 3 45 0 1779 151 93 24 chrX 119714512 119715005 -57259135 + MER44D DNA MER2_type 1 605 0 1438 177 7 14 chrX 119715714 119715991 -57258149 - AluJo SINE Alu -1 311 37 239 250 87 0 chrX 119716069 119716161 -57257979 + L1 LINE L1 4733 4832 -1314 22 56 0 0 chrX 119716326 119716362 -57257778 + AT_rich Low_complexity Low_complexity 1 36 0 225 305 128 5 chrX 119716545 119716748 -57257392 + L1ME LINE L1 5328 5555 -609 1556 65 0 39 chrX 119716765 119716800 -57257340 - L1PA5 LINE L1 -248 5906 5871 381 20 0 0 chrX 119716800 119716850 -57257290 - L1PA6 LINE L1 0 6154 6105 1556 65 0 39 chrX 119716850 119717045 -57257095 - L1PA5 LINE L1 -283 5871 5685 4999 55 0 10 chrX 119717050 119717753 -57256387 + L1P LINE L1 4698 5393 -753 538 235 108 63 chrX 119717743 119718101 -57256039 + L1MC4a LINE L1 5508 5825 -296 * 1967 98 11 0 chrX 119718106 119718372 -57255768 + AluSq SINE Alu 43 311 -2 2506 105 3 0 chrX 119718585 119718938 -57255202 + THE1A LTR MaLR 1 354 -1 363 261 183 28 chrX 119719240 119719420 -57254720 - L1ME4a LINE L1 -5 6116 5909 263 356 98 0 chrX 119719466 119719629 -57254511 - L2 LINE L2 -955 2359 2181 1490 174 109 63 chrX 119719861 119720086 -57254054 - Charlie1b DNA MER1_type -2256 505 292 1511 224 9 0 chrX 119720086 119720430 -57253710 + L1PB4 LINE L1 5807 6153 -3 1490 174 109 63 chrX 119720430 119720550 -57253590 - Charlie1b DNA MER1_type -2469 292 179 2281 110 3 0 chrX 119720550 119720858 -57253282 + AluSc SINE Alu 1 309 0 1490 174 109 63 chrX 119720858 119720883 -57253257 - Charlie1b DNA MER1_type -2582 179 157 1722 180 17 7 chrX 119720883 119721177 -57252963 - AluJo SINE Alu -11 301 5 1490 174 109 63 chrX 119721177 119721282 -57252858 - Charlie1b DNA MER1_type -2604 157 6 791 312 84 43 chrX 119721377 119721963 -57252177 + L2 LINE L2 2693 3308 -5 2557 111 5 13 chrX 119723551 119723929 -57250211 + THE1C LTR MaLR 1 375 0 22 0 0 0 chrX 119724030 119724052 -57250088 + AT_rich Low_complexity Low_complexity 1 22 0 284 253 27 13 chrX 119724190 119724265 -57249875 + L2 LINE L2 3234 3309 -4 204 259 0 19 chrX 119727108 119727162 -57246978 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 0 0 0 chrX 119727257 119727279 -57246861 + (A)n Simple_repeat Simple_repeat 1 22 0 249 127 16 32 chrX 119727459 119727522 -57246618 + CT-rich Low_complexity Low_complexity 1 62 0 222 266 0 0 chrX 119727826 119727890 -57246250 + (CA)n Simple_repeat Simple_repeat 1 64 0 192 125 0 0 chrX 119731184 119731216 -57242924 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 216 0 0 0 chrX 119731315 119731339 -57242801 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 225 0 0 0 chrX 119731338 119731363 -57242777 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chrX 119731416 119731446 -57242694 + AT_rich Low_complexity Low_complexity 1 30 0 588 84 0 0 chrX 119735937 119736020 -57238120 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 23 68 0 0 chrX 119736168 119736212 -57237928 + AT_rich Low_complexity Low_complexity 1 44 0 270 220 0 0 chrX 119737306 119737356 -57236784 + L2 LINE L2 3223 3272 0 771 323 99 32 chrX 119737454 119737910 -57236230 - L2 LINE L2 -547 2767 2266 1462 205 14 27 chrX 119737910 119738203 -57235937 + AluJb SINE Alu 1 289 -23 771 323 99 32 chrX 119738203 119738304 -57235836 - L2 LINE L2 -1048 2266 2173 771 249 65 44 chrX 119738309 119738473 -57235667 + MER2 DNA MER2_type 1 160 -185 708 188 0 16 chrX 119738473 119738601 -57235539 + FLAM_A SINE Alu 2 127 -6 771 249 65 44 chrX 119738601 119738774 -57235366 + MER2 DNA MER2_type 160 345 0 860 128 27 0 chrX 119739053 119739202 -57234938 + L1MB1 LINE L1 6011 6163 -5 23 0 0 0 chrX 119739247 119739270 -57234870 + AT_rich Low_complexity Low_complexity 1 23 0 1552 289 34 45 chrX 119739278 119739831 -57234309 + L2 LINE L2 2431 2977 -337 818 153 89 138 chrX 119739863 119740040 -57234100 - MLT1A1 LTR MaLR -52 313 158 195 69 0 0 chrX 119740040 119740069 -57234071 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 818 153 89 138 chrX 119740069 119740218 -57233922 - MLT1A1 LTR MaLR -207 158 3 999 299 87 21 chrX 119740344 119740722 -57233418 + L2 LINE L2 2911 3313 0 632 245 84 26 chrX 119740759 119741208 -57232932 + L1ME4a LINE L1 5575 6088 -33 206 279 16 0 chrX 119742172 119742233 -57231907 + (TA)n Simple_repeat Simple_repeat 2 63 0 240 35 0 0 chrX 119743591 119743620 -57230520 + (TTTTC)n Simple_repeat Simple_repeat 3 31 0 1408 171 0 103 chrX 119743624 119743945 -57230195 - AluJb SINE Alu -24 288 1 273 155 70 0 chrX 119743997 119744068 -57230072 - L1ME4a LINE L1 -5 6116 6041 189 224 0 0 chrX 119744189 119744247 -57229893 + (CATA)n Simple_repeat Simple_repeat 1 58 0 180 158 0 0 chrX 119744246 119744284 -57229856 + GA-rich Low_complexity Low_complexity 2 39 0 * 641 290 29 7 chrX 119744424 119744696 -57229444 - L1ME4a LINE L1 -296 5825 5548 2120 129 0 0 chrX 119744715 119745010 -57229130 - AluSg1 SINE Alu -11 298 4 1907 158 54 40 chrX 119745177 119745601 -57228539 - MSTB1 LTR MaLR 0 432 3 544 266 7 28 chrX 119745666 119745809 -57228331 + MIR3 SINE MIR 23 162 -46 22 0 0 0 chrX 119747113 119747135 -57227005 + AT_rich Low_complexity Low_complexity 1 22 0 435 76 76 0 chrX 119948926 119948992 -57025148 - L1PA10 LINE L1 0 6168 6098 1627 175 7 0 chrX 119949679 119949964 -57024176 - AluJb SINE Alu -22 290 4 628 158 0 0 chrX 119952080 119952175 -57021965 - AluJ/FLAM SINE Alu -217 95 1 27 29 0 0 chrX 119952643 119952677 -57021463 + AT_rich Low_complexity Low_complexity 1 34 0 1624 208 9 53 chrX 119952696 119952737 -57021403 - MLT2D LTR ERVL 0 414 373 342 0 0 0 chrX 119952737 119952775 -57021365 + (TG)n Simple_repeat Simple_repeat 2 39 0 1624 208 9 53 chrX 119952775 119953166 -57020974 - MLT2D LTR ERVL -41 373 1 311 277 106 111 chrX 119953233 119953648 -57020492 + L2 LINE L2 1235 1647 -1667 922 163 56 28 chrX 119953659 119953837 -57020303 - AluJb SINE Alu -23 289 107 498 96 0 0 chrX 119954094 119954167 -57019973 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 181 304 29 14 chrX 119954181 119954250 -57019890 - L2 LINE L2 -46 3267 3198 2177 221 44 44 chrX 119955744 119956310 -57017830 - MLT1F1 LTR MaLR -1 566 1 3195 112 34 0 chrX 119956311 119956819 -57017321 + L1MA2 LINE L1 5779 6303 -1 22 35 0 0 chrX 119957057 119957086 -57017054 + AT_rich Low_complexity Low_complexity 1 29 0 202 296 25 12 chrX 119957468 119957549 -57016591 - MIR3 SINE MIR -7 201 120 8824 163 65 15 chrX 119958039 119961442 -57012698 - L1PBa LINE L1 -3123 3739 6 15552 138 17 42 chrX 119961576 119964995 -57009145 - L1P4 LINE L1 -393 5775 2455 15941 182 30 16 chrX 119965195 119968243 -57005897 + L1M1 LINE L1 12 3102 -4463 240 308 82 14 chrX 119968588 119968723 -57005417 + L2 LINE L2 1494 1641 -1673 1628 167 33 17 chrX 119968723 119969022 -57005118 - AluJo SINE Alu -8 304 1 3163 190 19 22 chrX 119969049 119969717 -57004423 - L1MA9 LINE L1 -38 6274 5609 555 290 18 86 chrX 119970028 119970249 -57003891 + MIR SINE MIR 32 237 -25 395 244 0 0 chrX 119970249 119970331 -57003809 + MSTB LTR MaLR 1 82 -344 194 284 0 81 chrX 119970336 119970379 -57003761 + MIR SINE MIR 195 231 -31 2255 158 72 20 chrX 119970379 119970784 -57003356 + MSTB LTR MaLR 1 426 0 194 284 0 81 chrX 119970784 119970814 -57003326 + MIR SINE MIR 231 262 0 413 323 31 8 chrX 119971006 119971136 -57003004 + MIR3 SINE MIR 69 201 -7 573 263 0 0 chrX 119971158 119971272 -57002868 + FLAM_A SINE Alu 4 117 -16 230 130 0 0 chrX 119971275 119971321 -57002819 - LTR66 LTR ERVL -171 439 394 22 0 0 0 chrX 119971903 119971925 -57002215 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chrX 119972035 119972081 -57002059 + AT_rich Low_complexity Low_complexity 1 46 0 1056 236 33 0 chrX 119973555 119973767 -57000373 - MER20 DNA MER1_type 0 219 1 216 0 0 0 chrX 119974321 119974345 -56999795 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 7970 106 5 10 chrX 119974668 119975868 -56998272 + HERVH LTR ERV1 1794 2987 -4726 860 145 21 0 chrX 119975862 119976007 -56998133 + HERVH LTR ERV1 3140 3287 -4426 * 3238 119 6 6 chrX 119976005 119976499 -56997641 + HERVH LTR ERV1 3500 3993 -3720 4222 138 11 6 chrX 119976501 119977160 -56996980 + HERVH LTR ERV1 4488 5149 -2564 1329 143 19 0 chrX 119977161 119977377 -56996763 + HERVH LTR ERV1 5600 5819 -1894 * 2500 79 45 13 chrX 119977375 119977755 -56996385 + HERVH LTR ERV1 7322 7713 0 3446 55 0 11 chrX 119977755 119978208 -56995932 + LTR7 LTR ERV1 1 448 -2 1686 117 48 31 chrX 119978210 119978501 -56995639 + LTR29 LTR ERV1 327 622 0 4517 99 9 2 chrX 119978603 119979238 -56994902 - MER51C LTR ERV1 0 640 1 534 83 0 0 chrX 119979335 119979407 -56994733 + MER4B LTR ERV1 1 72 -538 7122 228 21 33 chrX 119979546 119982203 -56991937 - L1P3 LINE L1 -3671 2790 10 14560 175 29 3 chrX 119983401 119987690 -56986450 + L1MA1 LINE L1 3312 7714 -7 2797 193 9 3 chrX 119988287 119988862 -56985278 + L1MB2 LINE L1 5587 6164 -7 1690 184 13 10 chrX 119990209 119990514 -56983626 - AluJo SINE Alu -5 307 2 6774 126 14 29 chrX 119990699 119991812 -56982328 - Tigger1 DNA MER2_type 0 2418 1322 3912 112 72 38 chrX 119991812 119992811 -56981329 + MER11A LTR ERVK 1 1266 0 8395 130 27 1 chrX 119992811 119994104 -56980036 - Tigger1 DNA MER2_type -1091 1327 1 599 305 90 17 chrX 119994214 119994259 -56979881 - MIR SINE MIR -11 251 211 997 114 72 0 chrX 119994259 119994426 -56979714 - L1MA5 LINE L1 -10 6290 6112 599 305 90 17 chrX 119994426 119994613 -56979527 - MIR SINE MIR -51 211 2 416 242 163 39 chrX 119994786 119994964 -56979176 + MLT1I LTR MaLR 19 218 -191 355 219 26 61 chrX 119996141 119996255 -56977885 + MLT1F1 LTR MaLR 25 134 -433 1843 202 32 52 chrX 119996256 119996571 -56977569 + L1MD3 LINE L1 7412 7715 -280 1474 195 29 53 chrX 119996571 119996945 -56977195 - MLT1A1 LTR MaLR 0 365 1 1843 202 32 52 chrX 119996945 119997134 -56977006 + L1MD3 LINE L1 7715 7906 -89 268 154 19 0 chrX 119997152 119997204 -56976936 - MLT2B1 LTR ERVL 0 520 468 356 183 30 53 chrX 119997207 119997376 -56976764 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 376 170 70 23 chrX 119997390 119997561 -56976579 + (TA)n Simple_repeat Simple_repeat 2 180 0 227 197 0 56 chrX 119997569 119997640 -56976500 - LTR66 LTR ERVL -171 439 373 * 425 265 39 0 chrX 119997614 119997716 -56976424 - MLT2B1 LTR ERVL -84 436 331 772 254 33 14 chrX 119998096 119998392 -56975748 - MER90 LTR ERV1 0 614 279 531 320 125 31 chrX 119998636 119998950 -56975190 - L2 LINE L2 -771 2543 2260 1237 240 70 36 chrX 119998950 119999396 -56974744 + MLT2C2 LTR ERVL 4 464 0 531 320 125 31 chrX 119999396 119999659 -56974481 - L2 LINE L2 -1054 2260 1912 320 322 64 41 chrX 119999769 119999940 -56974200 - MIR SINE MIR -51 211 37 906 284 0 0 chrX 120000233 120000451 -56973689 - MIR SINE MIR 0 262 45 21 57 0 0 chrX 120003501 120003536 -56970604 + AT_rich Low_complexity Low_complexity 1 35 0 205 286 60 12 chrX 120003540 120003624 -56970516 + MER5A DNA MER1_type 4 91 -98 1929 294 64 52 chrX 120003675 120004528 -56969612 - L3 LINE CR1 -42 1535 667 180 0 0 0 chrX 120004528 120004548 -56969592 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1929 294 64 52 chrX 120004548 120004657 -56969483 - L3 LINE CR1 -910 667 561 3655 223 44 24 chrX 120004775 120006704 -56967436 - L1MB7 LINE L1 -10 6174 4018 33578 30 0 0 chrX 120006748 120010793 -56963347 + L1P LINE L1 1327 5371 -775 8899 193 19 5 chrX 120010898 120013341 -56960799 + L1PB1 LINE L1 3326 5791 -360 551 43 101 10 chrX 120013351 120013567 -56960573 + (TA)n Simple_repeat Simple_repeat 1 235 0 2289 143 0 3 chrX 120013575 120013946 -56960194 + L1PB1 LINE L1 5782 6151 0 2896 193 102 23 chrX 120014530 120015333 -56958807 + L1MC3 LINE L1 6034 5877 -467 189 0 0 0 chrX 120015333 120015354 -56958786 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2896 193 102 23 chrX 120015354 120015636 -56958504 + L1MC3 LINE L1 5876 6134 -210 6758 121 35 11 chrX 120015645 120017688 -56956452 + L1PBa LINE L1 3 2237 -4626 2084 185 26 32 chrX 120017688 120018250 -56955890 - MLT2A2 LTR ERVL 0 554 1 1009 143 6 0 chrX 120018250 120018418 -56955722 - HERVL-A2 LTR ERVL 0 5654 5486 446 186 24 48 chrX 120018429 120018553 -56955587 + L1PA14 LINE L1 3437 3557 -2589 * 3825 155 10 8 chrX 120018550 120019663 -56954477 - L1M1 LINE L1 -617 5687 4570 248 98 0 0 chrX 120019657 120019698 -56954442 + L1MA2 LINE L1 6100 6140 -164 * 1108 116 0 0 chrX 120019709 120019879 -56954261 + AluSc SINE Alu 133 302 0 1072 100 0 0 chrX 120019884 120020034 -56954106 + L1MA2 LINE L1 6152 6301 -3 1901 246 28 12 chrX 120020045 120020611 -56953529 + L1 LINE L1 3883 4457 -1689 4137 98 8 3 chrX 120020612 120021202 -56952938 - MER11C LTR ERVK 0 1071 479 1908 108 60 0 chrX 120021462 120021783 -56952357 - AluSq SINE Alu 0 337 1 4090 142 19 0 chrX 120022591 120023766 -56950374 + L1PA14 LINE L1 4614 5810 -351 4327 127 2 7 chrX 120023766 120024381 -56949759 + LTR9 LTR ERV1 1 612 0 9901 140 28 19 chrX 120024386 120026020 -56948120 + HUERS-P3 LTR ERV1 5 1652 -7267 639 205 0 0 chrX 120026017 120026134 -56948006 + HUERS-P3 LTR ERV1 1791 1907 -7012 * 20380 126 18 8 chrX 120026157 120028920 -56945220 + HUERS-P3 LTR ERV1 2069 4866 -4053 2423 93 0 0 chrX 120028920 120029231 -56944909 + AluY SINE Alu 1 311 0 20380 126 18 8 chrX 120029231 120029433 -56944707 + HUERS-P3 LTR ERV1 4866 5064 -3855 5768 106 4 1 chrX 120029431 120030232 -56943908 + HUERS-P3 LTR ERV1 5017 5819 -3100 * 4694 170 20 6 chrX 120030232 120031021 -56943119 + HUERS-P3 LTR ERV1 6183 6982 -1937 832 177 11 17 chrX 120031012 120031187 -56942953 + LTR9-int LTR ERV1 3945 4118 -3698 * 528 202 8 16 chrX 120031183 120031312 -56942828 + LTR9-int LTR ERV1 2433 2560 -2455 * 1505 123 0 5 chrX 120031648 120031867 -56942273 + LTR9-int LTR ERV1 8701 8918 -1 4185 127 2 21 chrX 120031867 120032491 -56941649 + LTR9 LTR ERV1 1 612 0 2259 121 0 28 chrX 120032491 120032854 -56941286 + L1PA14 LINE L1 5807 6159 -2 1984 119 0 34 chrX 120033496 120033790 -56940350 + AluSg SINE Alu 2 285 -25 305 207 19 19 chrX 120034082 120034237 -56939903 + GA-rich Low_complexity Low_complexity 1 155 0 802 271 17 6 chrX 120034280 120034461 -56939679 + MLT1E LTR MaLR 9 191 -402 1079 233 86 4 chrX 120034496 120034741 -56939399 + MLT1E LTR MaLR 329 593 0 346 263 68 38 chrX 120035076 120035209 -56938931 - MIR3 SINE MIR -5 203 67 22 0 0 0 chrX 120038151 120038173 -56935967 + AT_rich Low_complexity Low_complexity 1 22 0 1602 94 4 4 chrX 120038173 120038408 -56935732 - L1MA1 LINE L1 0 6302 6068 740 154 0 26 chrX 120038414 120038531 -56935609 - FLAM_C SINE Alu -16 127 14 1434 96 0 23 chrX 120038531 120038751 -56935389 - L1MA1 LINE L1 -220 6082 5868 963 239 10 90 chrX 120040532 120040624 -56933516 + HERVL74 LTR ERVL 3046 3144 -2541 2228 87 10 10 chrX 120040624 120040935 -56933205 - AluY SINE Alu 0 311 1 963 239 10 90 chrX 120040935 120041152 -56932988 + HERVL74 LTR ERVL 3144 3330 -2355 2455 197 40 11 chrX 120041379 120041857 -56932283 + LTR53 LTR ERVL 1 492 -27 23 0 0 0 chrX 120042542 120042565 -56931575 + AT_rich Low_complexity Low_complexity 1 23 0 180 152 0 0 chrX 120043652 120043685 -56930455 + (AATAG)n Simple_repeat Simple_repeat 3 35 0 25 31 0 0 chrX 120043953 120043985 -56930155 + AT_rich Low_complexity Low_complexity 1 32 0 4816 113 24 52 chrX 120044427 120045229 -56928911 + MER4E LTR ERV1 1 779 0 1736 154 12 39 chrX 120045704 120046041 -56928099 + LTR29 LTR ERV1 1 328 -294 3566 44 0 7 chrX 120046042 120046493 -56927647 + LTR7 LTR ERV1 1 448 -2 6450 84 36 37 chrX 120046495 120048027 -56926113 + HERVH LTR ERV1 1 1596 -6117 4408 185 34 17 chrX 120048175 120049152 -56924988 - L1MB5 LINE L1 -8 6166 5165 4196 145 30 4 chrX 120050747 120051476 -56922664 - L1MC1 LINE L1 -1 6332 5585 749 196 24 10 chrX 120051485 120051694 -56922446 - L1MB5 LINE L1 -2912 3234 3023 282 247 39 0 chrX 120051705 120051782 -56922358 + L1ME1 LINE L1 2547 2626 -3914 * 560 158 51 17 chrX 120051773 120051950 -56922190 - L1MDa LINE L1 -4025 2515 2333 216 0 0 0 chrX 120051950 120051974 -56922166 + (CA)n Simple_repeat Simple_repeat 2 25 0 455 207 107 7 chrX 120051985 120052125 -56922015 - L1MDa LINE L1 -4621 1919 1766 3310 254 67 44 chrX 120052126 120053743 -56920397 - L1MDa LINE L1 -4823 1717 3 213 237 68 0 chrX 120054484 120054543 -56919597 + MIR SINE MIR 146 208 -54 267 284 81 0 chrX 120054830 120054904 -56919236 - L2 LINE L2 0 3313 3234 196 349 85 38 chrX 120055239 120055474 -56918666 - L3 LINE CR1 -333 1244 999 256 289 53 18 chrX 120055488 120055602 -56918538 - L1MC4 LINE L1 -1 8041 7924 1264 157 0 27 chrX 120055677 120055900 -56918240 - Tigger2a DNA MER2_type -217 217 1 364 240 8 40 chrX 120055916 120056041 -56918099 - L1ME2 LINE L1 -13 6151 6031 1432 217 40 17 chrX 120056117 120056467 -56917673 - L1ME2 LINE L1 -307 5857 5500 1063 251 28 6 chrX 120056481 120056800 -56917340 + L1ME1 LINE L1 4415 4740 -1800 286 237 0 0 chrX 120056900 120056959 -56917181 + L1ME1 LINE L1 5451 5509 -1031 28 0 0 0 chrX 120056981 120057009 -56917131 + AT_rich Low_complexity Low_complexity 1 28 0 560 274 6 0 chrX 120057009 120057173 -56916967 - L1ME LINE L1 -346 5818 5654 1418 48 5 11 chrX 120057173 120057359 -56916781 - L1PA4 LINE L1 0 6155 5971 2563 230 75 36 chrX 120057371 120058337 -56915803 + L1ME1 LINE L1 5554 6555 -5 22 94 0 0 chrX 120059974 120060038 -56914102 + AT_rich Low_complexity Low_complexity 1 64 0 3935 250 41 30 chrX 120060577 120061730 -56912410 + L1M4 LINE L1 1 1165 -5377 2843 224 22 14 chrX 120061935 120062769 -56911371 + L1M4 LINE L1 2458 3304 -3340 315 289 16 0 chrX 120063070 120063191 -56910949 + MER103 DNA DNA 44 166 0 309 328 39 0 chrX 120063534 120063662 -56910478 + MIR SINE MIR 69 201 -61 1970 194 14 3 chrX 120064051 120064401 -56909739 + MLT1A1 LTR MaLR 1 354 -11 377 236 94 31 chrX 120064435 120064562 -56909578 - MIR SINE MIR 0 262 128 197 263 88 0 chrX 120064562 120064619 -56909521 - MIR SINE MIR -105 157 96 315 298 0 0 chrX 120064647 120064731 -56909409 + MIR SINE MIR 174 257 -5 2190 115 0 0 chrX 120064736 120065085 -56909055 + L1PA14 LINE L1 5835 6183 0 493 167 183 8 chrX 120065167 120065287 -56908853 + MIR SINE MIR 122 262 0 283 288 0 14 chrX 120065279 120065352 -56908788 - MIR SINE MIR -107 155 84 * 1497 237 14 17 chrX 120065464 120065814 -56908326 + LTR53 LTR ERVL 171 519 0 4151 251 58 51 chrX 120066909 120068880 -56905260 + HERVL74 LTR ERVL 528 2568 -988 2270 104 3 0 chrX 120068907 120069216 -56904924 - AluSp SINE Alu -3 310 1 1599 229 101 35 chrX 120069216 120069643 -56904497 + MLT2B1 LTR ERVL 64 518 -2 3378 230 20 16 chrX 120069646 120070341 -56903799 + HERVL74 LTR ERVL 2421 3118 -2567 2504 45 10 10 chrX 120070360 120070671 -56903469 - AluY SINE Alu 0 311 1 6763 24 0 1 chrX 120070847 120071637 -56902503 + L1PA3 LINE L1 5363 6151 -4 3590 254 14 4 chrX 120071651 120072755 -56901385 - L1MEc LINE L1 -2695 3520 2406 440 221 23 0 chrX 120072756 120072841 -56901299 - MER44D DNA MER2_type 0 605 519 779 287 0 11 chrX 120072841 120073022 -56901118 + MER8 DNA MER2_type 1 179 -60 281 250 17 0 chrX 120073000 120073060 -56901080 + MER2 DNA MER2_type 285 345 0 * 1353 150 0 0 chrX 120073063 120073283 -56900857 - MER44D DNA MER2_type -90 515 241 9731 84 7 2 chrX 120073360 120074628 -56899512 + HSMAR1 DNA Mariner 14 1287 0 1370 226 8 0 chrX 120074628 120074871 -56899269 - MER44D DNA MER2_type -460 245 1 322 269 0 0 chrX 120074873 120074966 -56899174 - L1MEc LINE L1 -3811 2404 2312 887 130 25 19 chrX 120074969 120075130 -56899010 - L1MA6 LINE L1 -402 5898 5737 573 294 65 45 chrX 120075131 120075638 -56898502 - L1MEc LINE L1 -4055 2341 1825 574 293 12 6 chrX 120075903 120076067 -56898073 - MLT1A1 LTR MaLR -2 363 199 22485 158 11 14 chrX 120076128 120083864 -56890276 + L1MA3 LINE L1 15 7724 0 192 125 0 0 chrX 120084991 120085023 -56889117 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chrX 120085706 120085734 -56888406 + AT_rich Low_complexity Low_complexity 1 28 0 204 389 56 0 chrX 120086828 120086918 -56887222 + L2 LINE L2 3127 3221 -51 278 227 106 45 chrX 120088097 120088229 -56885911 - HAL1 LINE L1 -8 2499 2360 512 244 143 58 chrX 120088241 120088452 -56885688 - LTR4 LTR ERV1 0 596 358 4734 56 3 2 chrX 120088452 120089042 -56885098 - LTR10C LTR ERV1 0 591 1 512 244 143 58 chrX 120089042 120089088 -56885052 - LTR4 LTR ERV1 -238 358 317 528 252 98 77 chrX 120089180 120089505 -56884635 - LTR4 LTR ERV1 -262 334 3 1463 279 46 20 chrX 120089552 120089927 -56884213 - HAL1 LINE L1 -210 2297 1901 2178 96 7 17 chrX 120089927 120090229 -56883911 - AluSp SINE Alu -3 310 12 1463 279 46 20 chrX 120090229 120090415 -56883725 - HAL1 LINE L1 -606 1901 1721 814 323 42 74 chrX 120090454 120091348 -56882792 - HAL1 LINE L1 -1605 902 37 3820 253 58 43 chrX 120092051 120093339 -56880801 + L1ME1 LINE L1 2983 4251 -2083 2228 70 19 6 chrX 120093339 120093643 -56880497 + L1PA13 LINE L1 5846 6162 -1 3820 253 58 43 chrX 120093643 120095552 -56878588 + L1ME1 LINE L1 4251 6304 -30 1525 350 50 11 chrX 120095939 120096880 -56877260 - L2 LINE L2 0 3313 2253 235 259 123 25 chrX 120096981 120097062 -56877078 - L2 LINE L2 -54 3259 3171 1441 191 31 12 chrX 120097063 120097382 -56876758 - L1MA10 LINE L1 -1 6333 6009 2223 203 50 23 chrX 120097383 120098292 -56875848 - L1ME3 LINE L1 -235 5927 4953 843 274 180 16 chrX 120098296 120098669 -56875471 + L2 LINE L2 2864 3297 -16 222 37 0 0 chrX 120098672 120098699 -56875441 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 2025 87 80 7 chrX 120099056 120099344 -56874796 + AluSg SINE Alu 1 309 -1 288 269 76 34 chrX 120099361 120099480 -56874660 - MIR SINE MIR -120 142 19 237 386 38 30 chrX 120100112 120100244 -56873896 - L2 LINE L2 -7 3265 3133 1246 171 42 0 chrX 120101480 120101696 -56872444 + AluJo SINE Alu 72 296 -16 22 0 0 0 chrX 120101705 120101727 -56872413 + AT_rich Low_complexity Low_complexity 1 22 0 493 269 77 6 chrX 120103170 120103346 -56870794 - MIR SINE MIR -54 208 18 958 196 4 44 chrX 120103741 120103966 -56870174 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chrX 120104179 120104200 -56869940 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chrX 120104371 120104414 -56869726 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chrX 120106112 120106154 -56867986 + AT_rich Low_complexity Low_complexity 1 42 0 590 203 0 45 chrX 120106387 120106520 -56867620 - MER3 DNA MER1_type 0 209 83 22 0 0 0 chrX 120106849 120106871 -56867269 + AT_rich Low_complexity Low_complexity 1 22 0 278 179 0 6 chrX 120106949 120107013 -56867127 - MLT2C1 LTR ERVL -3 517 333 1640 195 36 6 chrX 120107108 120107441 -56866699 - MLT2C1 LTR ERVL -54 343 1 335 319 133 0 chrX 120108667 120108780 -56865360 - L2 LINE L2 -1 3271 3144 315 147 29 0 chrX 120108881 120108949 -56865191 - L1MD3 LINE L1 0 7995 7926 745 208 115 22 chrX 120108950 120109133 -56865007 + MLT2D LTR ERVL 3 202 -212 500 129 0 0 chrX 120109134 120109204 -56864936 + AluSq SINE Alu 84 153 -160 32 26 0 0 chrX 120309215 120309254 -56664886 + AT_rich Low_complexity Low_complexity 1 39 0 185 263 0 0 chrX 120309272 120309329 -56664811 + (CATATA)n Simple_repeat Simple_repeat 3 59 0 2690 112 17 0 chrX 120309458 120309860 -56664280 + L1PB2 LINE L1 5743 6151 0 43 47 0 0 chrX 120310344 120310408 -56663732 + AT_rich Low_complexity Low_complexity 1 64 0 1988 164 17 12 chrX 120310539 120311032 -56663108 + L1M2 LINE L1 5145 5639 -673 193 100 60 80 chrX 120311087 120311137 -56663003 - MIR SINE MIR -94 168 120 1075 222 111 33 chrX 120311167 120311450 -56662690 - LTR50 LTR ERVL -5 790 530 2496 92 20 3 chrX 120311450 120311799 -56662341 - THE1A LTR MaLR 0 355 1 10775 118 13 2 chrX 120311799 120313361 -56660779 - THE1A-int LTR MaLR 0 1580 1 2468 93 32 3 chrX 120313361 120313706 -56660434 - THE1A LTR MaLR 0 355 1 1075 222 111 33 chrX 120313706 120314070 -56660070 - LTR50 LTR ERVL -264 531 6 222 347 28 0 chrX 120314341 120314413 -56659727 - MIR SINE MIR -162 100 27 242 217 0 0 chrX 120314477 120314537 -56659603 + T-rich Low_complexity Low_complexity 1 60 0 522 25 114 0 chrX 120314538 120314617 -56659523 - L1PA4 LINE L1 -2 6153 6066 686 220 9 40 chrX 120314620 120314660 -56659480 + L1MA4 LINE L1 6078 6118 -182 2055 154 0 23 chrX 120314660 120315005 -56659135 + MER1B DNA MER1_type 1 337 0 686 220 9 40 chrX 120315005 120315191 -56658949 + L1MA4 LINE L1 6118 6297 -3 292 279 0 25 chrX 120316516 120316595 -56657545 + L2 LINE L2 3177 3253 -19 390 333 119 17 chrX 120316649 120316826 -56657314 + MIR SINE MIR 20 214 -48 320 244 156 7 chrX 120317469 120317604 -56656536 - L1ME LINE L1 -343 5778 5624 42704 48 5 1 chrX 120318847 120324974 -56649166 + L1PA4 LINE L1 4 6155 0 23 0 0 0 chrX 120325078 120325101 -56649039 + AT_rich Low_complexity Low_complexity 1 23 0 5402 118 31 8 chrX 120326499 120327852 -56646288 + L1PA13 LINE L1 4789 6153 -10 377 244 31 39 chrX 120328807 120328934 -56645206 + L1ME3A LINE L1 6030 6155 -15 201 321 0 18 chrX 120329604 120329660 -56644480 + MIR SINE MIR 40 94 -114 319 328 47 0 chrX 120330164 120330292 -56643848 - MIR SINE MIR -8 254 121 255 61 0 0 chrX 120330310 120330343 -56643797 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 269 39 13 chrX 120330445 120330523 -56643617 + MIR SINE MIR 122 201 -61 384 246 42 25 chrX 120331836 120331954 -56642186 + MER103 DNA DNA 46 165 -1 202 300 17 33 chrX 120332125 120332185 -56641955 + L2 LINE L2 3213 3271 -1 218 306 118 41 chrX 120332313 120332483 -56641657 + MIR SINE MIR 71 253 -9 438 282 96 70 chrX 120332712 120333141 -56640999 - L1M4 LINE L1 -1357 4789 4350 225 305 59 25 chrX 120333173 120333291 -56640849 - L1M4 LINE L1 -2016 4130 4009 591 209 37 37 chrX 120333294 120333481 -56640659 - L1MB8 LINE L1 -2 6176 5990 5089 109 19 30 chrX 120333720 120334574 -56639566 - L1MA2 LINE L1 0 6304 5461 17713 33 0 1 chrX 120334585 120337492 -56636648 - L1PA4 LINE L1 0 6155 3250 3718 275 24 14 chrX 120337640 120337716 -56636424 + L1M4c LINE L1 2025 2099 -4283 2307 84 0 3 chrX 120337716 120338014 -56636126 + AluY SINE Alu 1 297 -14 3718 275 24 14 chrX 120338014 120339307 -56634833 + L1M4c LINE L1 2099 3410 -2972 2247 109 0 10 chrX 120339307 120339619 -56634521 + AluSc SINE Alu 1 309 0 3718 275 24 14 chrX 120339619 120339840 -56634300 + L1M4c LINE L1 3410 3627 -2755 1046 264 30 64 chrX 120339848 120340143 -56633997 + MER70B LTR ERVL 6 285 -293 1969 155 0 0 chrX 120340143 120340439 -56633701 - AluJb SINE Alu -16 296 1 1046 264 30 64 chrX 120340439 120340549 -56633591 + MER70B LTR ERVL 285 397 -181 1746 178 49 71 chrX 120340550 120341209 -56632931 + L1M1 LINE L1 3098 3744 -3821 11547 40 1 0 chrX 120341309 120342731 -56631409 - L1P LINE L1 -3197 2949 1527 5693 66 0 0 chrX 120342721 120343446 -56630694 - L1P LINE L1 -5418 728 4 * 1282 154 34 3 chrX 120343453 120343812 -56630328 - L1M1 LINE L1 -745 6820 6524 * 4746 204 38 8 chrX 120343807 120345172 -56628968 - L1M1 LINE L1 -2803 4762 3355 8014 212 71 54 chrX 120345173 120345656 -56628484 - L1M1 LINE L1 -4303 3262 2789 229 80 20 20 chrX 120345656 120345706 -56628434 + (TTTG)n Simple_repeat Simple_repeat 1 50 0 1977 115 0 7 chrX 120345706 120345984 -56628156 - AluSc SINE Alu -33 276 1 8014 212 71 54 chrX 120345984 120348352 -56625788 - L1M1 LINE L1 -4775 2790 13 342 0 0 0 chrX 120348731 120348769 -56625371 + (CA)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chrX 120348960 120348998 -56625142 + AT_rich Low_complexity Low_complexity 1 38 0 339 318 114 43 chrX 120349052 120349351 -56624789 - L1MC/D LINE L1 -2198 5610 5291 848 194 94 24 chrX 120349734 120350046 -56624094 + MLT2C2 LTR ERVL 1 404 -60 279 0 0 0 chrX 120350047 120350078 -56624062 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 27 0 0 chrX 120350106 120350143 -56623997 + (CA)n Simple_repeat Simple_repeat 2 38 0 7552 103 1 1 chrX 120350153 120351178 -56622962 - THE1B-int LTR MaLR -555 1025 1 2177 139 14 19 chrX 120351178 120351544 -56622596 - THE1B LTR MaLR 0 364 1 25 65 0 0 chrX 120351917 120351963 -56622177 + AT_rich Low_complexity Low_complexity 1 46 0 323 302 0 19 chrX 120352149 120352255 -56621885 + L1ME4a LINE L1 5931 6034 -87 25 51 0 0 chrX 120352488 120352527 -56621613 + AT_rich Low_complexity Low_complexity 1 39 0 1588 248 43 58 chrX 120353972 120354504 -56619636 + L1M2 LINE L1 469 992 -6497 2005 286 30 48 chrX 120354611 120355662 -56618478 + L1M2 LINE L1 1898 2929 -4636 2859 130 0 20 chrX 120355665 120356112 -56618028 + L1PA13 LINE L1 5689 6126 -37 * 3407 246 3 64 chrX 120356110 120357072 -56617068 - L1PA14 LINE L1 -1161 4985 4083 6133 104 7 11 chrX 120357084 120358265 -56615875 + L1PA14 LINE L1 4980 6156 -5 1543 262 68 25 chrX 120358275 120359051 -56615089 + L1M2 LINE L1 2914 3724 -3841 12520 201 20 11 chrX 120359053 120362309 -56611831 + L1M2 LINE L1 3868 7158 -552 342 0 0 0 chrX 120362328 120362366 -56611774 + (TG)n Simple_repeat Simple_repeat 1 38 0 395 347 88 17 chrX 120362748 120362987 -56611153 - MIR SINE MIR 0 262 7 418 281 20 39 chrX 120363412 120363565 -56610575 + MLT1K LTR MaLR 282 431 -157 265 179 45 15 chrX 120363863 120363930 -56610210 - MER103 DNA DNA -77 89 21 739 315 63 36 chrX 120364116 120364481 -56609659 - L3 LINE CR1 -769 808 434 349 282 105 24 chrX 120364933 120365142 -56608998 + L1ME LINE L1 234 459 -5611 393 297 72 32 chrX 120365265 120365726 -56608414 + L1ME LINE L1 495 973 -5097 2507 173 21 14 chrX 120366802 120367322 -56606818 - L1MA9 LINE L1 0 7731 7208 4357 208 26 4 chrX 120367324 120368373 -56605767 - L1MA9 LINE L1 -1975 5590 4519 1948 147 0 3 chrX 120368508 120368807 -56605333 + AluSx SINE Alu 5 302 -10 679 244 6 0 chrX 120368844 120369000 -56605140 + MIR SINE MIR 74 230 -32 1372 212 39 6 chrX 120369084 120369442 -56604698 - L1MA9 LINE L1 -3039 4526 4157 284 286 36 0 chrX 120369426 120369538 -56604602 - L1MA9 LINE L1 -4428 3137 3022 * 2420 244 28 21 chrX 120369594 120370485 -56603655 - L1MA9 LINE L1 -4369 3197 2295 650 342 25 36 chrX 120371717 120372109 -56602031 - L1MA9 LINE L1 -5752 1744 1357 21 36 0 0 chrX 120372276 120372304 -56601836 + AT_rich Low_complexity Low_complexity 1 28 0 312 281 73 43 chrX 120372449 120372613 -56601527 - L1ME3 LINE L1 -31 6131 5963 216 0 0 0 chrX 120373670 120373694 -56600446 + (TG)n Simple_repeat Simple_repeat 1 24 0 * 228 35 0 0 chrX 120373693 120373722 -56600418 + (GA)n Simple_repeat Simple_repeat 1 29 0 199 359 34 26 chrX 120374328 120374445 -56599695 - MIR SINE MIR -63 145 28 22 56 0 0 chrX 120374714 120374750 -56599390 + AT_rich Low_complexity Low_complexity 1 36 0 614 298 34 0 chrX 120374842 120375020 -56599120 - L1ME3A LINE L1 -50 6120 5937 1998 147 0 0 chrX 120375225 120375524 -56598616 - AluSx SINE Alu -13 299 1 27 0 0 0 chrX 120375530 120375557 -56598583 + AT_rich Low_complexity Low_complexity 1 27 0 5922 13 0 6 chrX 120375557 120376243 -56597897 - L1PA2 LINE L1 0 6155 5474 3556 240 34 32 chrX 120376244 120378458 -56595682 - L1MB7 LINE L1 -13 6171 3953 237 178 0 0 chrX 120378460 120378505 -56595635 + CT-rich Low_complexity Low_complexity 3 47 0 822 99 52 12 chrX 120378539 120378711 -56595429 + CT-rich Low_complexity Low_complexity 2 180 0 2249 62 0 31 chrX 120378829 120379184 -56594956 - AluY SINE Alu 0 346 1 1698 274 43 11 chrX 120379189 120379905 -56594235 - L1MB7 LINE L1 -2939 3207 2469 910 259 98 63 chrX 120379989 120380449 -56593691 + L1M4 LINE L1 -188 287 -5993 303 247 39 0 chrX 120380472 120380549 -56593591 + L1M4 LINE L1 915 994 -5286 1639 226 23 23 chrX 120380552 120380946 -56593194 - MSTD LTR MaLR -2 394 1 6148 248 63 31 chrX 120380946 120382627 -56591513 - MSTD-int LTR MaLR 0 1735 2 1072 249 89 24 chrX 120382631 120383001 -56591139 - MSTD LTR MaLR -2 394 1 2533 261 48 19 chrX 120383011 120384203 -56589937 + L1M4 LINE L1 1001 2313 -4071 5104 23 2 3 chrX 120384321 120384949 -56589191 + L1PA2 LINE L1 5539 6165 0 1939 265 43 28 chrX 120384955 120385467 -56588673 + L1M4 LINE L1 2510 3042 -3340 1765 209 34 6 chrX 120385467 120385822 -56588318 + MLT1A1 LTR MaLR 1 365 0 1939 265 43 28 chrX 120385822 120386161 -56587979 + L1M4 LINE L1 3042 3374 -3008 16102 200 39 38 chrX 120386166 120389533 -56584607 + L1MA2 LINE L1 16 3397 -4168 192 77 0 0 chrX 120389533 120389559 -56584581 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 16102 200 39 38 chrX 120389559 120391451 -56582689 + L1MA2 LINE L1 3397 5285 -2280 1746 163 102 8 chrX 120391451 120391858 -56582282 - MER61D LTR ERV1 0 501 1 6300 157 23 68 chrX 120391864 120392509 -56581631 + L1MA2 LINE L1 5288 5961 -1762 1856 118 3 66 chrX 120392509 120392814 -56581326 + AluSx SINE Alu 1 286 -26 6300 157 23 68 chrX 120392814 120394727 -56579413 + L1MA2 LINE L1 5961 7723 0 1765 274 38 37 chrX 120394710 120395625 -56578515 + L1M4 LINE L1 3338 4253 -2129 * 792 245 62 14 chrX 120396799 120397089 -56577051 + L1 LINE L1 2868 3171 -2975 206 173 30 30 chrX 120397237 120397405 -56576735 + (TA)n Simple_repeat Simple_repeat 2 169 0 25 0 0 0 chrX 120397455 120397480 -56576660 + AT_rich Low_complexity Low_complexity 1 25 0 1873 181 18 5 chrX 120397655 120398036 -56576104 - L1PA16 LINE L1 -4 6162 5777 189 211 0 0 chrX 120398055 120398112 -56576028 + (TA)n Simple_repeat Simple_repeat 2 58 0 6780 196 37 19 chrX 120398120 120399826 -56574314 - L1PA16 LINE L1 -388 5768 4022 2363 69 7 0 chrX 120399826 120400129 -56574011 - AluY SINE Alu -6 305 1 6780 196 37 19 chrX 120400129 120400514 -56573626 - L1PA16 LINE L1 -2134 4022 3645 245 294 21 21 chrX 120400743 120400886 -56573254 - MER41B LTR ERV1 -220 415 273 1687 247 29 13 chrX 120401075 120401552 -56572588 - L1 LINE L1 -2496 3650 3166 25 31 0 0 chrX 120402192 120402224 -56571916 + AT_rich Low_complexity Low_complexity 1 32 0 375 194 0 32 chrX 120402396 120402582 -56571558 + (TA)n Simple_repeat Simple_repeat 1 180 0 390 225 0 0 chrX 120402596 120402774 -56571366 + (TA)n Simple_repeat Simple_repeat 1 178 0 21 36 0 0 chrX 120402774 120402802 -56571338 + AT_rich Low_complexity Low_complexity 1 28 0 402 190 0 27 chrX 120402802 120402986 -56571154 + (TA)n Simple_repeat Simple_repeat 2 180 0 33 25 0 0 chrX 120403095 120403135 -56571005 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chrX 120406217 120406246 -56567894 + AT_rich Low_complexity Low_complexity 1 29 0 3250 75 9 2 chrX 120406332 120406772 -56567368 - L1PA8A LINE L1 -3 6128 5686 6175 101 2 9 chrX 120406772 120408003 -56566137 + L1PA8A LINE L1 4454 5675 -456 22 35 0 0 chrX 120408150 120408179 -56565961 + AT_rich Low_complexity Low_complexity 1 29 0 1215 201 35 49 chrX 120408308 120408596 -56565544 - AluJo SINE Alu -26 286 3 4716 64 15 0 chrX 120408664 120409559 -56564581 + L1PA7 LINE L1 4968 5870 -284 418 230 88 0 chrX 120409924 120410072 -56564068 - MER96B DNA MER1_type? -24 393 233 189 0 0 0 chrX 120410229 120410250 -56563890 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1401 180 3 28 chrX 120410480 120410769 -56563371 + L1MA9 LINE L1 5994 6275 -37 5230 60 0 6 chrX 120411084 120411762 -56562378 - L1PA7 LINE L1 -2 6152 5479 7954 107 7 5 chrX 120411767 120413757 -56560383 - L1PA7 LINE L1 -2 6152 4160 26 64 0 0 chrX 120413834 120413881 -56560259 + AT_rich Low_complexity Low_complexity 1 47 0 58 28 0 0 chrX 120413997 120414069 -56560071 + AT_rich Low_complexity Low_complexity 1 72 0 444 104 0 0 chrX 120414216 120414283 -56559857 + (TC)n Simple_repeat Simple_repeat 2 68 0 402 100 0 0 chrX 120414283 120414343 -56559797 + (CA)n Simple_repeat Simple_repeat 1 60 0 358 300 41 70 chrX 120414352 120414525 -56559615 - HAL1 LINE L1 -1135 1372 1206 1845 209 44 96 chrX 120414525 120415066 -56559074 + MLT2B2 LTR ERVL 3 515 0 358 300 41 70 chrX 120415066 120415135 -56559005 - HAL1 LINE L1 -1301 1206 1137 2141 96 14 0 chrX 120415438 120415729 -56558411 - AluSg SINE Alu -15 295 1 1695 220 9 31 chrX 120416343 120416800 -56557340 - L1MB1 LINE L1 -532 5639 5193 1070 195 9 9 chrX 120416798 120417008 -56557132 + L1MB1 LINE L1 5638 5847 -321 * 421 232 174 44 chrX 120417685 120417978 -56556162 - MLT1E3 LTR MaLR -318 308 1 1831 161 32 35 chrX 120418116 120418488 -56555652 - THE1C LTR MaLR 0 375 5 26 30 0 0 chrX 120418985 120419018 -56555122 + AT_rich Low_complexity Low_complexity 1 33 0 569 313 89 13 chrX 120419079 120419303 -56554837 + MIR SINE MIR 1 241 -21 308 304 10 25 chrX 120419427 120419553 -56554587 + CT-rich Low_complexity Low_complexity 1 124 0 264 336 22 22 chrX 120419634 120419768 -56554372 - L2 LINE L2 -1303 2011 1878 19250 186 19 17 chrX 120420973 120423049 -56551091 - L1MA2 LINE L1 0 7723 5652 4634 29 13 0 chrX 120423049 120423601 -56550539 - L1PA4 LINE L1 -8 6147 5589 19250 186 19 17 chrX 120423601 120429220 -56544920 - L1MA2 LINE L1 -2071 5652 16 1232 184 17 8 chrX 120429858 120430097 -56544043 - Tigger7 DNA MER2_type 0 2491 2251 3044 192 97 2 chrX 120430103 120430680 -56543460 - Tigger7 DNA MER2_type -101 632 1 24 0 0 0 chrX 120430846 120430870 -56543270 + AT_rich Low_complexity Low_complexity 1 24 0 699 113 0 0 chrX 120431885 120431991 -56542149 - AluSp/q SINE Alu 0 313 208 746 71 31 0 chrX 120432826 120432953 -56541187 + (TCTA)n Simple_repeat Simple_repeat 4 134 0 22 0 0 0 chrX 120433309 120433331 -56540809 + AT_rich Low_complexity Low_complexity 1 22 0 253 363 15 7 chrX 120433699 120433834 -56540306 - LTR67 LTR ERVL -4 553 418 21 0 0 0 chrX 120435040 120435061 -56539079 + AT_rich Low_complexity Low_complexity 1 21 0 1390 135 78 4 chrX 120436245 120436489 -56537651 - AluJb SINE Alu -22 290 29 23 0 0 0 chrX 120436955 120436978 -56537162 + AT_rich Low_complexity Low_complexity 1 23 0 205 205 0 0 chrX 120437513 120437552 -56536588 + (TA)n Simple_repeat Simple_repeat 1 39 0 5154 196 37 5 chrX 120437955 120439707 -56534433 + L1PA16 LINE L1 4358 6165 -1 395 338 75 6 chrX 120439848 120440008 -56534132 - L2 LINE L2 -2836 478 308 399 75 0 0 chrX 120440008 120440061 -56534079 + MADE1 DNA Mariner 1 53 -27 23 54 0 0 chrX 120440163 120440200 -56533940 + AT_rich Low_complexity Low_complexity 1 37 0 1387 267 39 28 chrX 120441147 120441578 -56532562 + L1M4 LINE L1 3 438 -6104 21828 189 21 23 chrX 120441586 120447735 -56526405 - L1PA11 LINE L1 0 6489 369 2823 219 24 7 chrX 120447740 120448454 -56525686 + L1MB7 LINE L1 5440 6165 -19 470 254 15 15 chrX 120449872 120450006 -56524134 - FLAM_C SINE Alu -7 136 3 1658 165 0 33 chrX 120450610 120450913 -56523227 - AluJb SINE Alu -19 293 1 198 0 0 0 chrX 120450983 120451005 -56523135 + (TA)n Simple_repeat Simple_repeat 1 22 0 1215 195 111 47 chrX 120451031 120451411 -56522729 - MLT1C LTR MaLR 0 467 64 21 0 0 0 chrX 120451411 120451432 -56522708 + AT_rich Low_complexity Low_complexity 1 21 0 407 277 116 0 chrX 120451512 120451624 -56522516 - L2 LINE L2 0 3272 3148 539 276 98 24 chrX 120452273 120452519 -56521621 + MER34 LTR ERV1 1 264 -278 2429 143 45 26 chrX 120452536 120452963 -56521177 - MER83 LTR ERV1 -12 436 2 782 201 53 59 chrX 120452965 120453269 -56520871 + MER34B LTR ERV1 262 563 -2 645 273 10 15 chrX 120453295 120453500 -56520640 + L1ME4a LINE L1 5636 5839 -282 21 0 0 0 chrX 120454963 120454984 -56519156 + AT_rich Low_complexity Low_complexity 1 21 0 1655 195 0 0 chrX 120455370 120455652 -56518488 - AluJb SINE Alu -24 288 7 572 53 0 0 chrX 120455655 120455777 -56518363 - L1PA2 LINE L1 0 6155 6077 2401 173 19 12 chrX 120456776 120457147 -56516993 - L1PB4 LINE L1 -3 6153 5777 2377 58 0 32 chrX 120457147 120457459 -56516681 - AluY SINE Alu -9 302 1 2401 173 19 12 chrX 120457459 120457573 -56516567 - L1PB4 LINE L1 -379 5777 5665 680 127 0 15 chrX 120457472 120457597 -56516543 - L1M3 LINE L1 -391 5765 5651 1451 175 27 38 chrX 120457994 120458131 -56516009 + AluJb SINE Alu 1 138 -174 234 0 0 0 chrX 120458131 120458157 -56515983 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1451 175 27 38 chrX 120458157 120458311 -56515829 + AluJb SINE Alu 138 289 -23 5857 99 7 6 chrX 120458514 120459615 -56514525 + L1P3 LINE L1 4509 5605 -549 21 0 0 0 chrX 120460144 120460165 -56513975 + AT_rich Low_complexity Low_complexity 1 21 0 284 274 59 29 chrX 120460648 120460750 -56513390 + MIR SINE MIR 13 117 -145 2279 12 0 0 chrX 120460790 120461048 -56513092 + L1PA3 LINE L1 5897 6154 -1 272 318 48 34 chrX 120461132 120461636 -56512504 + L1ME LINE L1 4316 4826 -1320 233 328 42 37 chrX 120461636 120461877 -56512263 + L1ME LINE L1 5607 5848 -273 1449 204 48 31 chrX 120462171 120462280 -56511860 + MLT1A1 LTR MaLR 3 109 -256 1927 231 19 72 chrX 120462280 120462865 -56511275 + MLT2B3 LTR ERVL 1 554 0 1449 204 48 31 chrX 120462865 120463116 -56511024 + MLT1A1 LTR MaLR 109 363 -2 2269 167 18 25 chrX 120463130 120463567 -56510573 + Tigger2a DNA MER2_type 1 434 0 23 0 0 0 chrX 120463718 120463741 -56510399 + AT_rich Low_complexity Low_complexity 1 23 0 692 321 97 48 chrX 120464144 120464466 -56509674 + L1ME4a LINE L1 5341 5646 -475 2559 121 3 0 chrX 120464466 120464829 -56509311 - THE1B LTR MaLR 0 364 1 10340 122 9 29 chrX 120464829 120466441 -56507699 - THE1B-int LTR MaLR 0 1580 1 2469 109 17 0 chrX 120466441 120466799 -56507341 - THE1B LTR MaLR 0 364 1 692 321 97 48 chrX 120466799 120467218 -56506922 + L1ME4a LINE L1 5645 6120 -1 200 143 24 0 chrX 120467690 120467732 -56506408 + T-rich Low_complexity Low_complexity 3 45 0 255 398 47 8 chrX 120467875 120468003 -56506137 + L2 LINE L2 2879 3011 -261 246 313 73 73 chrX 120468227 120468473 -56505667 - MLT1K LTR MaLR -183 405 160 1599 198 140 5 chrX 120468756 120469191 -56504949 + LTR54B LTR ERV1 3 496 -2 295 240 80 20 chrX 120469956 120470106 -56504034 - L1ME4a LINE L1 -2 6119 5961 492 298 78 16 chrX 120470141 120470386 -56503754 - MIR SINE MIR 0 262 3 1364 227 52 0 chrX 120470440 120470784 -56503356 - L1MB7 LINE L1 -8 6176 5815 607 206 22 0 chrX 120470799 120470935 -56503205 - L1MB4 LINE L1 -2 6178 6040 2750 81 55 83 chrX 120470970 120471096 -56503044 + MLT2A1 LTR ERVL 1 129 -315 2375 82 3 0 chrX 120471096 120471400 -56502740 - AluSp SINE Alu -8 305 1 2750 81 55 83 chrX 120471400 120471689 -56502451 + MLT2A1 LTR ERVL 129 404 -40 191 88 29 0 chrX 120471689 120471723 -56502417 + (TA)n Simple_repeat Simple_repeat 2 36 0 2750 81 55 83 chrX 120471723 120471763 -56502377 + MLT2A1 LTR ERVL 404 444 0 23333 85 4 1 chrX 120471763 120474828 -56499312 + HERVL-A1 LTR ERVL 1 3074 -2580 358 146 0 0 chrX 120474828 120474883 -56499257 + MLT2A1 LTR ERVL 390 444 0 386 150 17 0 chrX 120474892 120474952 -56499188 + MER21B LTR ERV1 12 72 -791 1700 256 158 44 chrX 120474993 120475580 -56498560 + MER21B LTR ERV1 19 714 -149 1888 158 24 6 chrX 120475580 120475916 -56498224 + MER61A LTR ERV1 1 342 -1 1700 256 158 44 chrX 120475916 120476085 -56498055 + MER21B LTR ERV1 714 862 -1 3512 206 42 5 chrX 120476089 120477427 -56496713 - L1MB5 LINE L1 -125 6049 4662 1534 259 40 29 chrX 120477495 120478216 -56495924 - L1MB5 LINE L1 -2392 3754 3026 391 364 27 5 chrX 120478259 120478443 -56495697 + MIR3 SINE MIR 20 207 -1 501 305 103 0 chrX 120481752 120481926 -56492214 + MIR SINE MIR 71 262 0 6759 17 0 0 chrX 120481947 120483094 -56491046 - L1PA3 LINE L1 -127 6028 4882 1055 25 0 0 chrX 120483094 120483255 -56490885 + L1PA2 LINE L1 6019 6184 0 2808 10 0 0 chrX 120483829 120484137 -56490003 + AluYa5 SINE Alu 1 308 -3 25 0 0 0 chrX 120485746 120485771 -56488369 + AT_rich Low_complexity Low_complexity 1 25 0 214 245 113 0 chrX 120486506 120486559 -56487581 - L2 LINE L2 0 3313 3255 348 91 0 0 chrX 120486889 120486933 -56487207 - U6 snRNA snRNA -63 44 1 1395 139 25 8 chrX 120486942 120487186 -56486954 + L1PA13 LINE L1 5914 6161 -2 191 250 0 131 chrX 120487298 120487382 -56486758 + L2 LINE L2 2448 2520 -794 2353 149 43 12 chrX 120487411 120487826 -56486314 + MSTA LTR MaLR 1 428 0 225 326 0 0 chrX 120488248 120488291 -56485849 + L2 LINE L2 3128 3170 -102 1640 191 7 13 chrX 120489272 120489576 -56484564 - AluJb SINE Alu -10 302 1 242 303 74 74 chrX 120489576 120489689 -56484451 - L2 LINE L2 -8 3264 3149 601 297 108 9 chrX 120489689 120489921 -56484219 - MIR SINE MIR -4 258 4 484 212 20 46 chrX 120491301 120491452 -56482688 + L1MC3 LINE L1 7637 7783 -2 34 65 0 0 chrX 120491595 120491657 -56482483 + AT_rich Low_complexity Low_complexity 1 62 0 322 255 32 0 chrX 120491688 120491782 -56482358 - L1ME LINE L1 -393 5728 5632 2507 150 22 22 chrX 120492358 120492804 -56481336 - Tigger2 DNA MER2_type 0 2718 2273 512 116 0 0 chrX 120492794 120492863 -56481277 - Tigger2 DNA MER2_type -2649 69 1 * 31 76 0 0 chrX 120492884 120492950 -56481190 + AT_rich Low_complexity Low_complexity 1 66 0 2116 118 0 13 chrX 120493339 120493643 -56480497 + AluSx SINE Alu 1 300 -12 2142 140 43 0 chrX 120493714 120494063 -56480077 - THE1B LTR MaLR 0 364 1 10401 114 39 4 chrX 120494063 120495589 -56478551 - THE1B-int LTR MaLR -1 1579 1 2069 157 25 3 chrX 120495589 120495945 -56478195 - THE1B LTR MaLR 0 364 1 1232 113 9 9 chrX 120496659 120496871 -56477269 + L1MA1 LINE L1 5961 6172 -130 269 53 0 0 chrX 120496869 120496907 -56477233 + L1MA3 LINE L1 6268 6305 0 * 21 57 0 0 chrX 120497443 120497478 -56476662 + AT_rich Low_complexity Low_complexity 1 35 0 221 290 21 21 chrX 120497697 120497790 -56476350 + MIR SINE MIR 50 142 -66 979 325 100 20 chrX 120497866 120498541 -56475599 + L2 LINE L2 2580 3313 0 21 57 0 0 chrX 120498602 120498637 -56475503 + AT_rich Low_complexity Low_complexity 1 35 0 29 70 0 0 chrX 120499114 120499171 -56474969 + AT_rich Low_complexity Low_complexity 1 57 0 329 259 177 49 chrX 120499256 120499499 -56474641 - L1M4 LINE L1 -3311 2835 2562 846 235 5 0 chrX 120499582 120499769 -56474371 - MER5A DNA MER1_type -1 188 1 388 333 60 12 chrX 120499779 120499947 -56474193 + MER5B DNA MER1_type 2 177 -1 655 230 43 64 chrX 120500236 120500471 -56473669 - MIR SINE MIR 0 262 33 669 278 158 25 chrX 120500888 120501205 -56472935 - MLT1B LTR MaLR -11 379 21 225 0 0 0 chrX 120501236 120501261 -56472879 + (TTAA)n Simple_repeat Simple_repeat 2 26 0 2105 125 0 0 chrX 120501263 120501551 -56472589 - AluSx SINE Alu -24 288 1 24 0 0 0 chrX 120502117 120502141 -56471999 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 120502220 120502243 -56471897 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 859 166 0 7 chrX 120502419 120502564 -56471576 + MLT1A1 LTR MaLR 1 144 -221 630 174 16 16 chrX 120502559 120502680 -56471460 + MLT1A1 LTR MaLR 245 365 0 * 1653 225 39 11 chrX 120502682 120503195 -56470945 + MLT1A1-int LTR MaLR 2 644 -1091 31 68 0 0 chrX 120503273 120503332 -56470808 + AT_rich Low_complexity Low_complexity 1 59 0 237 209 0 0 chrX 120503353 120503396 -56470744 + MLT1A1-int LTR MaLR 662 704 -1031 233 348 74 0 chrX 120503703 120503838 -56470302 + MLT1A1-int LTR MaLR 962 1106 -629 2036 238 42 2 chrX 120503948 120504380 -56469760 + MLT1A1-int LTR MaLR 1287 1735 0 623 155 0 0 chrX 120504380 120504483 -56469657 + MLT1A1 LTR MaLR 1 103 -262 411 271 103 83 chrX 120505946 120506313 -56467827 - L1ME LINE L1 -493 5628 5265 201 196 20 0 chrX 120506415 120506466 -56467674 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 6281 105 9 47 chrX 120506470 120507540 -56466600 - L1MA2 LINE L1 -16 7707 6678 * 11265 195 19 21 chrX 120507535 120510870 -56463270 - L1MA2 LINE L1 -1109 6456 3116 252 120 0 0 chrX 120510870 120510920 -56463220 + (TA)n Simple_repeat Simple_repeat 1 50 0 11265 195 19 21 chrX 120510920 120511581 -56462559 - L1MA2 LINE L1 -4449 3116 2455 2411 81 3 0 chrX 120511581 120511889 -56462251 - AluY SINE Alu -2 309 1 11265 195 19 21 chrX 120511889 120511913 -56462227 - L1MA2 LINE L1 -5110 2455 2432 1561 220 122 13 chrX 120511913 120512299 -56461841 + MSTA LTR MaLR 1 428 0 9206 144 13 34 chrX 120512299 120513912 -56460228 + MSTA-int LTR MaLR 1 1580 0 11265 195 19 21 chrX 120513912 120513930 -56460210 - L1MA2 LINE L1 -5132 2433 2416 2434 71 0 0 chrX 120513930 120514225 -56459915 - AluSg SINE Alu -15 295 1 2112 151 16 14 chrX 120514230 120514600 -56459540 - THE1C LTR MaLR -4 371 1 1670 161 125 38 chrX 120514600 120514992 -56459148 + MSTA LTR MaLR 3 428 0 11265 195 19 21 chrX 120514992 120515459 -56458681 - L1MA2 LINE L1 -5152 2413 1945 1391 186 0 104 chrX 120515459 120515786 -56458354 + AluJb SINE Alu 3 295 -17 11265 195 19 21 chrX 120515786 120515962 -56458178 - L1MA2 LINE L1 -5620 1945 1770 7756 177 28 14 chrX 120517540 120519229 -56454911 - L1MA2 LINE L1 -5795 1770 17 1233 185 81 20 chrX 120520231 120520529 -56453611 - L1MA9 LINE L1 -351 5961 5646 1234 160 14 0 chrX 120520529 120520748 -56453392 + L1MA9 LINE L1 5415 5636 -676 673 281 20 15 chrX 120520754 120520950 -56453190 + L2 LINE L2 2437 2633 -681 23 0 0 0 chrX 120520994 120521017 -56453123 + AT_rich Low_complexity Low_complexity 1 23 0 204 158 0 0 chrX 120521729 120521767 -56452373 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chrX 120521837 120521865 -56452275 + AT_rich Low_complexity Low_complexity 1 28 0 304 265 0 0 chrX 120523096 120523164 -56450976 - L2 LINE L2 -2 3311 3244 24 0 0 0 chrX 120523436 120523460 -56450680 + AT_rich Low_complexity Low_complexity 1 24 0 270 281 11 34 chrX 120523577 120523666 -56450474 - L2 LINE L2 -995 2319 2233 1556 241 8 5 chrX 120523897 120524271 -56449869 + L1PA10 LINE L1 8 382 -5493 18375 191 11 32 chrX 120524275 120528819 -56445321 + L1PA10 LINE L1 566 5040 -1421 11519 47 2 7 chrX 120528822 120530991 -56443149 + L1PA5 LINE L1 3962 6120 -34 501 71 0 0 chrX 120530991 120531061 -56443079 + L1PA5 LINE L1 6085 6154 0 5808 102 10 45 chrX 120531069 120532521 -56441619 + L1PA10 LINE L1 5050 6473 -10 11512 133 81 14 chrX 120532554 120533400 -56440740 + Tigger1 DNA MER2_type 2 790 -1628 2940 9 0 0 chrX 120533400 120533718 -56440422 + AluYb8 SINE Alu 1 318 0 11512 133 81 14 chrX 120533718 120534842 -56439298 + Tigger1 DNA MER2_type 790 2104 -314 629 250 0 0 chrX 120534840 120534976 -56439164 + Tigger1 DNA MER2_type 2278 2413 -5 * 761 184 0 27 chrX 120535207 120535354 -56438786 + FRAM SINE Alu 1 143 -33 180 0 0 0 chrX 120535356 120535376 -56438764 + (CA)n Simple_repeat Simple_repeat 1 20 0 598 100 0 17 chrX 120535460 120535680 -56438460 + AluSx SINE Alu 1 295 -14 291 54 0 0 chrX 120536311 120536348 -56437792 + (CA)n Simple_repeat Simple_repeat 1 37 0 726 302 54 0 chrX 120537126 120537368 -56436772 - MIR SINE MIR 0 262 8 478 194 0 0 chrX 120538220 120538313 -56435827 - MLT1H LTR MaLR 0 549 457 3820 256 32 38 chrX 120538439 120540389 -56433751 + L1PA15 LINE L1 2 2007 -4780 2698 245 32 5 chrX 120540383 120541139 -56433001 + L1PA15 LINE L1 2698 3473 -3324 * 5830 93 26 0 chrX 120541139 120541970 -56432170 + L1PA8 LINE L1 5317 6169 -3 961 188 12 4 chrX 120541970 120542212 -56431928 + L1MB3 LINE L1 5823 6140 -43 911 262 48 4 chrX 120542210 120542423 -56431717 + L1PA15 LINE L1 3460 3689 -3108 * 432 37 0 0 chrX 120542423 120542477 -56431663 + (CA)n Simple_repeat Simple_repeat 1 54 0 911 262 48 4 chrX 120542477 120542534 -56431606 + L1PA15 LINE L1 3689 3742 -3055 432 37 0 0 chrX 120542660 120542714 -56431426 + (CA)n Simple_repeat Simple_repeat 1 54 0 9766 190 30 5 chrX 120542717 120545764 -56428376 + L1PA15 LINE L1 3689 6815 -1 273 119 0 0 chrX 120545812 120545854 -56428286 + (TG)n Simple_repeat Simple_repeat 2 43 0 2103 288 36 20 chrX 120547008 120547173 -56426967 + L1MC/D LINE L1 4 165 -6694 1672 205 57 39 chrX 120547173 120547383 -56426757 + MLT1C LTR MaLR 1 206 -261 1588 194 0 0 chrX 120547383 120547662 -56426478 + AluJb SINE Alu 31 309 -3 1672 205 57 39 chrX 120547662 120547909 -56426231 + MLT1C LTR MaLR 206 466 -1 2103 288 36 20 chrX 120547909 120548397 -56425743 + L1MC/D LINE L1 165 733 -6126 878 265 103 0 chrX 120548885 120549206 -56424934 + L1MD3 LINE L1 7628 7981 -14 2442 202 36 9 chrX 120549585 120550144 -56423996 + L1MB7 LINE L1 5587 6160 -24 544 283 137 32 chrX 120550309 120550783 -56423357 + L1MC/D LINE L1 5436 5959 -998 297 131 82 0 chrX 120550838 120550899 -56423241 - MER53 DNA DNA -19 170 105 234 302 32 21 chrX 120550955 120551144 -56422996 + L1MC/D LINE L1 6098 6288 -687 280 304 80 0 chrX 120551150 120551262 -56422878 + L1MC/D LINE L1 6343 6463 -2156 213 237 0 0 chrX 120551280 120551339 -56422801 + (TATG)n Simple_repeat Simple_repeat 3 61 0 677 207 80 13 chrX 120552770 120552920 -56421220 - AluJb SINE Alu -24 288 129 430 268 166 61 chrX 120553260 120553555 -56420585 - HAL1 LINE L1 -1370 1137 812 22 88 0 0 chrX 120553873 120553930 -56420210 + AT_rich Low_complexity Low_complexity 1 57 0 262 239 92 21 chrX 120553951 120554093 -56420047 - Charlie7 DNA MER1_type -2460 152 1 243 88 0 0 chrX 120554375 120554409 -56419731 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chrX 120554541 120554570 -56419570 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 120554972 120554994 -56419146 + AT_rich Low_complexity Low_complexity 1 22 0 801 171 47 6 chrX 120555274 120555444 -56418696 - L1MA3 LINE L1 -2 6303 6127 1208 127 47 5 chrX 120555444 120555650 -56418490 - L1MA3 LINE L1 0 6305 6084 3959 42 0 0 chrX 120555771 120556249 -56417891 - L1PA5 LINE L1 -2 6152 5675 2458 31 0 0 chrX 120556249 120556535 -56417605 + L1PA5 LINE L1 5384 5669 -485 527 230 96 0 chrX 120556560 120556695 -56417445 + MIR SINE MIR 54 201 -61 307 262 71 61 chrX 120557071 120557203 -56416937 + MER5A DNA MER1_type 46 178 0 1942 163 0 10 chrX 120557439 120557746 -56416394 - AluSx SINE Alu -6 306 3 229 291 10 39 chrX 120558561 120558664 -56415476 + CT-rich Low_complexity Low_complexity 3 102 0 440 153 0 0 chrX 120558683 120558755 -56415385 - MER52A LTR ERV1 0 1755 1684 * 3556 228 107 43 chrX 120558747 120559829 -56414311 - MER52A LTR ERV1 -559 1196 46 381 302 98 84 chrX 120559909 120560326 -56413814 - L1M2 LINE L1 -5766 1083 661 41746 37 22 2 chrX 120562259 120568229 -56405911 + L1PA3 LINE L1 57 6154 -1 3110 82 40 0 chrX 120568510 120568547 -56405593 - MLT2A1 LTR ERVL 0 444 410 195 69 0 0 chrX 120568547 120568576 -56405564 + (TA)n Simple_repeat Simple_repeat 1 29 0 3110 82 40 0 chrX 120568576 120568964 -56405176 - MLT2A1 LTR ERVL -34 410 2 15301 83 3 4 chrX 120568965 120569402 -56404738 - HERVL-A1 LTR ERVL 0 5654 5218 180 77 0 0 chrX 120569402 120569428 -56404712 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 15301 83 3 4 chrX 120569428 120571002 -56403138 - HERVL-A1 LTR ERVL -436 5218 3645 2826 108 24 5 chrX 120571745 120572162 -56401978 - MSTA LTR MaLR 0 428 4 197 304 11 22 chrX 120572170 120572262 -56401878 + L2 LINE L2 1854 1944 -1370 309 386 20 40 chrX 120572325 120572527 -56401613 + L2 LINE L2 2732 2929 -385 274 235 51 31 chrX 120572501 120572599 -56401541 + MIR SINE MIR 150 249 -13 * 376 253 100 65 chrX 120572602 120572772 -56401368 - MIR SINE MIR -46 216 41 1235 227 48 42 chrX 120573486 120573839 -56400301 - MLT1A1 LTR MaLR -10 355 1 902 241 97 4 chrX 120573879 120574116 -56400024 - L2 LINE L2 -523 2791 2533 396 298 0 8 chrX 120574211 120574335 -56399805 - L1MC4 LINE L1 -1018 7024 6902 1023 248 216 22 chrX 120574439 120575040 -56399100 + L1MC4a LINE L1 6059 6776 -1032 1150 326 93 6 chrX 120575046 120575276 -56398864 - L2 LINE L2 -768 2546 2337 6556 156 28 19 chrX 120575276 120575490 -56398650 + Tigger3b DNA MER2_type 3 214 -2814 2303 104 0 0 chrX 120575490 120575789 -56398351 + AluSq SINE Alu 1 299 -14 6556 156 28 19 chrX 120575789 120576792 -56397348 + Tigger3b DNA MER2_type 214 1231 0 1150 326 93 6 chrX 120576792 120577077 -56397063 - L2 LINE L2 -977 2337 1986 408 289 9 0 chrX 120578199 120578313 -56395827 - MIR SINE MIR 0 262 148 308 189 55 55 chrX 120578314 120578478 -56395662 - Charlie7 DNA MER1_type -30 2582 2419 264 300 11 0 chrX 120578451 120578541 -56395599 - Charlie7 DNA MER1_type -2516 96 6 * 618 292 98 126 chrX 120579668 120579719 -56394421 - L3 LINE CR1 -355 1222 1171 1535 203 50 89 chrX 120579719 120580203 -56393937 - MLT1C LTR MaLR -2 465 1 618 292 98 126 chrX 120580203 120580924 -56393216 - L3 LINE CR1 -406 1171 471 187 269 19 0 chrX 120580907 120580959 -56393181 - L2 LINE L2 -4 3268 3216 * 22 0 0 0 chrX 120581471 120581493 -56392647 + AT_rich Low_complexity Low_complexity 1 22 0 356 288 136 0 chrX 120581940 120582058 -56392082 + Charlie4 DNA MER1_type 4 137 -1824 423 268 66 71 chrX 120582286 120582469 -56391671 - MIR SINE MIR 0 262 81 787 145 72 12 chrX 120583169 120583335 -56390805 - L1MB3 LINE L1 -1 6182 6007 356 97 65 0 chrX 120583338 120583400 -56390740 + L1MB3 LINE L1 5946 6011 -172 246 32 0 0 chrX 120583426 120583457 -56390683 + (TC)n Simple_repeat Simple_repeat 2 32 0 221 191 15 0 chrX 120583457 120583477 -56390663 + (TA)n Simple_repeat Simple_repeat 1 19 -50 189 0 0 0 chrX 120583477 120583498 -56390642 + (CA)n Simple_repeat Simple_repeat 2 22 0 221 191 15 0 chrX 120583498 120583545 -56390595 + (TA)n Simple_repeat Simple_repeat 19 69 0 2468 199 20 64 chrX 120583581 120584585 -56389555 - L1MB3 LINE L1 -289 5894 4938 1994 205 13 57 chrX 120584616 120585147 -56388993 + L1ME1 LINE L1 5543 6050 -116 1087 84 6 18 chrX 120585157 120585323 -56388817 - L1MA5A LINE L1 0 6297 6134 918 146 50 20 chrX 120585329 120585528 -56388612 - L1MA5A LINE L1 -307 5990 5786 * 2590 239 30 11 chrX 120585514 120586277 -56387863 - L1MB3 LINE L1 -1201 4945 4168 22 35 0 0 chrX 120586379 120586408 -56387732 + AT_rich Low_complexity Low_complexity 1 29 0 311 205 51 39 chrX 120586416 120586494 -56387646 - L2 LINE L2 0 3313 3235 207 189 0 0 chrX 120586934 120586971 -56387169 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chrX 120587029 120587050 -56387090 + AT_rich Low_complexity Low_complexity 1 21 0 216 196 0 0 chrX 120587150 120587196 -56386944 + T-rich Low_complexity Low_complexity 1 46 0 1251 46 0 0 chrX 120587197 120587349 -56386791 - L1PA5 LINE L1 -8 6146 5995 1712 34 0 0 chrX 120587349 120587553 -56386587 + L1PA5 LINE L1 5754 5957 -197 625 324 44 0 chrX 120587721 120587925 -56386215 + MIR SINE MIR 50 262 0 1794 172 3 3 chrX 120588521 120588818 -56385322 + AluJb SINE Alu 3 299 -13 289 313 24 0 chrX 120588861 120588944 -56385196 - MIR3 SINE MIR -15 193 109 5674 111 12 0 chrX 120589551 120590219 -56383921 - L1PA13 LINE L1 0 6163 5481 198 0 0 0 chrX 120590219 120590241 -56383899 + (TTA)n Simple_repeat Simple_repeat 2 23 0 5674 111 12 0 chrX 120590241 120590418 -56383722 - L1PA13 LINE L1 -682 5481 5308 8336 161 23 13 chrX 120590418 120591999 -56382141 + L1P LINE L1 3338 4935 -1211 308 179 0 0 chrX 120592197 120592253 -56381887 + L1P LINE L1 4960 5015 -1131 1507 148 0 0 chrX 120592603 120592840 -56381300 - L1MA6 LINE L1 -615 5685 5449 2987 157 52 12 chrX 120592841 120592928 -56381212 + L1MA6 LINE L1 5693 5775 -525 210 26 77 0 chrX 120592928 120592967 -56381173 + (TA)n Simple_repeat Simple_repeat 2 43 0 2987 157 52 12 chrX 120592967 120593161 -56380979 + L1MA6 LINE L1 5775 5960 -340 1874 148 150 3 chrX 120593161 120593534 -56380606 - MSTA LTR MaLR 0 428 1 2987 157 52 12 chrX 120593534 120593826 -56380314 + L1MA6 LINE L1 5960 6290 -10 237 378 102 52 chrX 120594840 120595242 -56378898 + L2 LINE L2 2851 3272 0 208 375 78 26 chrX 120595237 120595469 -56378671 + L2 LINE L2 2218 2461 -853 * 246 354 34 51 chrX 120595561 120595739 -56378401 + L2 LINE L2 2598 2772 -542 181 351 0 18 chrX 120596114 120596171 -56377969 + L2 LINE L2 3138 3193 -79 25 0 0 0 chrX 120598971 120598996 -56375144 + AT_rich Low_complexity Low_complexity 1 25 0 242 317 67 17 chrX 120599336 120599456 -56374684 - L2 LINE L2 -9 3304 3179 220 378 24 24 chrX 120599759 120599886 -56374254 - L2 LINE L2 -210 3062 2936 389 345 24 12 chrX 120600027 120600192 -56373948 - MIR3 SINE MIR -1 207 41 430 283 318 0 chrX 120600265 120600463 -56373677 + MIR SINE MIR 2 262 0 4588 132 81 14 chrX 120600607 120600696 -56373444 - L1PA16 LINE L1 0 6166 6084 2603 118 23 52 chrX 120600696 120601137 -56373003 - MSTA LTR MaLR 0 428 1 4588 132 81 14 chrX 120601137 120601902 -56372238 - L1PA16 LINE L1 -82 6084 5255 3332 210 71 11 chrX 120601903 120602735 -56371405 + L1PA16 LINE L1 4375 5256 -890 7520 29 6 0 chrX 120603152 120604602 -56369538 - L1PA4 LINE L1 -1 6154 4701 4041 36 2 0 chrX 120604602 120605095 -56369045 + L1PA4 LINE L1 4204 4697 -1449 195 42 0 0 chrX 120605145 120605169 -56368971 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 245 256 33 0 chrX 120605963 120606053 -56368087 + (TG)n Simple_repeat Simple_repeat 2 94 0 240 56 0 28 chrX 120606070 120606106 -56368034 + Tigger7 DNA MER2_type 2254 2288 -203 40212 38 21 4 chrX 120606613 120612646 -56361494 + L1PA2 LINE L1 13 6155 0 26 0 0 0 chrX 120613997 120614023 -56360117 + AT_rich Low_complexity Low_complexity 1 26 0 623 287 9 32 chrX 120614224 120614440 -56359700 - MIR SINE MIR -40 222 12 254 374 40 0 chrX 120615085 120615184 -56358956 - L2 LINE L2 -15 3257 3155 182 204 0 74 chrX 120615191 120615245 -56358895 - L2 LINE L2 0 3313 3264 848 145 38 16 chrX 120615400 120615590 -56358550 + L1MA5 LINE L1 5184 5380 -766 2028 162 59 16 chrX 120615590 120616034 -56358106 + L1MA5 LINE L1 5835 6297 -3 848 145 38 16 chrX 120616034 120616047 -56358093 + L1MA5 LINE L1 5380 5391 -755 251 169 62 0 chrX 120616502 120616567 -56357573 + (TA)n Simple_repeat Simple_repeat 1 69 0 4709 29 0 0 chrX 120618144 120618692 -56355448 - L1PA3 LINE L1 -3 6152 5605 2681 21 12 0 chrX 120618692 120619027 -56355113 + L1PA3 LINE L1 5284 5622 -533 25 51 0 0 chrX 120619029 120619068 -56355072 + AT_rich Low_complexity Low_complexity 1 39 0 206 377 0 13 chrX 120619611 120619688 -56354452 - L3 LINE CR1 -5 1572 1497 267 305 11 32 chrX 120620046 120620141 -56353999 + MIR SINE MIR 1 93 -169 1294 245 117 57 chrX 120620324 120620835 -56353305 - MLT1F LTR MaLR 0 542 1 264 267 227 17 chrX 120621070 120621246 -56352894 + MIR SINE MIR 46 258 -4 201 353 0 0 chrX 120621350 120621418 -56352722 + L2 LINE L2 3201 3268 -4 204 325 77 51 chrX 120621463 120621580 -56352560 + L2 LINE L2 3193 3312 -1 253 299 52 13 chrX 120621602 120621679 -56352461 - L3 LINE CR1 -1051 526 447 459 295 92 28 chrX 120622384 120622601 -56351539 - MIR SINE MIR -13 249 19 304 357 39 74 chrX 120623006 120623342 -56350798 - L2 LINE L2 0 3272 2949 924 313 112 75 chrX 120624790 120625848 -56348292 - L2 LINE L2 -6 3307 2197 811 254 32 28 chrX 120626453 120626701 -56347439 - MIR SINE MIR -13 249 1 22 35 0 0 chrX 120627770 120627799 -56346341 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chrX 120628721 120628751 -56345389 + AT_rich Low_complexity Low_complexity 1 30 0 634 234 34 80 chrX 120629085 120629324 -56344816 + MIR SINE MIR 34 261 -1 1677 174 14 0 chrX 120629343 120629687 -56344453 + L1MA4A LINE L1 5774 6122 -181 442 186 18 0 chrX 120629683 120629788 -56344352 + L1MA4A LINE L1 6046 6279 0 * 253 138 17 17 chrX 120629811 120629869 -56344271 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 316 287 139 79 chrX 120631856 120632117 -56342023 + L1M4 LINE L1 650 943 -5906 195 42 0 0 chrX 120632117 120632141 -56341999 + (CCG)n Simple_repeat Simple_repeat 1 24 0 316 287 139 79 chrX 120632141 120632259 -56341881 + L1M4 LINE L1 943 1052 -5797 368 54 0 36 chrX 120632269 120632325 -56341815 + (CCG)n Simple_repeat Simple_repeat 3 56 0 212 147 0 0 chrX 120633885 120633919 -56340221 + (GA)n Simple_repeat Simple_repeat 2 35 0 219 268 14 0 chrX 120635042 120635113 -56339027 + (TA)n Simple_repeat Simple_repeat 2 73 0 743 295 41 12 chrX 120635522 120635861 -56338279 - L1MC/D LINE L1 -2002 5806 5458 195 381 88 23 chrX 120636149 120636456 -56337684 - L2 LINE L2 -701 2613 2287 1744 183 0 10 chrX 120636588 120636922 -56337218 + AluJb SINE Alu 1 312 0 351 327 86 71 chrX 120637949 120638540 -56335600 + L1M4 LINE L1 4439 5038 -1810 1526 283 75 26 chrX 120638549 120639248 -56334892 - L2 LINE L2 -1 3312 2588 1333 136 0 0 chrX 120639474 120639687 -56334453 - L1PA13 LINE L1 -334 5829 5617 817 200 4 61 chrX 120639680 120639925 -56334215 + L1PA14 LINE L1 5931 6161 0 * 371 243 68 72 chrX 120640088 120640323 -56333817 + L1MC4a LINE L1 5744 5977 -1831 216 308 43 26 chrX 120640500 120640617 -56333523 - L2 LINE L2 -1318 1996 1878 236 177 97 0 chrX 120640633 120640695 -56333445 + MER103 DNA DNA 98 165 -1 11230 32 0 0 chrX 120642403 120643822 -56330318 - L1P LINE L1 -3118 3028 1610 7654 18 6 0 chrX 120643822 120644856 -56329284 + L1PA3 LINE L1 5114 6152 -3 442 281 197 0 chrX 120645541 120645719 -56328421 - MIR SINE MIR -2 260 48 328 346 50 53 chrX 120645842 120645934 -56328206 - L1ME3A LINE L1 -310 5860 5769 1020 208 98 101 chrX 120645934 120646300 -56327840 + MLT1A1 LTR MaLR 1 365 0 328 346 50 53 chrX 120646300 120646490 -56327650 - L1ME3A LINE L1 -401 5769 5579 1152 133 0 5 chrX 120646624 120646819 -56327321 + MSTA LTR MaLR 3 196 -232 22082 178 19 19 chrX 120646829 120653292 -56320848 + L1PA10 LINE L1 10 6472 -11 22 0 0 0 chrX 120653292 120653314 -56320826 + AT_rich Low_complexity Low_complexity 1 22 0 1150 170 47 8 chrX 120653318 120653553 -56320587 + MSTA LTR MaLR 185 428 0 274 161 0 0 chrX 120654266 120654322 -56319818 + L1P LINE L1 3146 3201 -2945 * 3447 165 5 3 chrX 120654320 120654981 -56319159 - L1P LINE L1 -915 5231 4570 1933 132 47 49 chrX 120654981 120655346 -56318794 + THE1B LTR MaLR 1 364 0 6263 109 11 2 chrX 120655346 120656221 -56317919 + THE1B-int LTR MaLR 1 883 -697 325 83 33 33 chrX 120656214 120656274 -56317866 - L1P LINE L1 -1595 4551 4492 * 2677 240 45 10 chrX 120656333 120657042 -56317098 + L1MDa LINE L1 816 1549 -4991 1119 280 11 11 chrX 120657086 120657454 -56316686 + L1M2c LINE L1 1321 1688 -5101 * 1738 207 3 0 chrX 120657452 120657751 -56316389 + L1PA16 LINE L1 3 302 -6547 241 278 46 0 chrX 120657783 120657891 -56316249 - L1P LINE L1 -722 5429 5317 863 124 0 29 chrX 120658193 120658330 -56315810 - L1PA8A LINE L1 0 6131 5999 278 143 0 0 chrX 120658332 120658374 -56315766 + L1PA8A LINE L1 5955 5996 -176 * 5609 223 48 25 chrX 120658369 120659625 -56314515 + L1PA16 LINE L1 288 1571 -5278 709 210 0 0 chrX 120659682 120659820 -56314320 + L1PA16 LINE L1 1391 1528 -5322 5026 263 62 35 chrX 120660222 120660423 -56313717 + L1PA16 LINE L1 1427 1621 -5228 243 0 0 0 chrX 120660423 120660450 -56313690 + (TTA)n Simple_repeat Simple_repeat 2 28 0 5026 263 62 35 chrX 120660450 120663067 -56311073 + L1PA16 LINE L1 1621 4399 -2450 3776 189 37 48 chrX 120663046 120663932 -56310208 + L1PA16 LINE L1 5986 6861 -8 * 1871 232 75 17 chrX 120663942 120664637 -56309503 + L1M2 LINE L1 1717 2451 -4398 4261 255 23 14 chrX 120664743 120665510 -56308630 + L1MC/D LINE L1 3746 4505 -1737 1104 203 75 67 chrX 120665510 120665869 -56308271 - MLT1A1 LTR MaLR -3 362 1 4261 255 23 14 chrX 120665869 120666949 -56307191 + L1MC/D LINE L1 4505 5608 -634 557 230 22 0 chrX 120666946 120667081 -56307059 - L1 LINE L1 -784 5362 5225 * 3806 176 51 16 chrX 120667081 120667841 -56306299 + Tigger2 DNA MER2_type 1 787 -1931 1489 166 0 26 chrX 120667878 120668143 -56305997 + Tigger2 DNA MER2_type 2461 2718 0 1509 232 43 7 chrX 120668143 120668557 -56305583 - L1 LINE L1 -920 5226 4798 * 2081 136 11 3 chrX 120668556 120668910 -56305230 + L1MA6 LINE L1 5893 6249 -51 1151 171 23 0 chrX 120668978 120669194 -56304946 + L1MD1 LINE L1 6016 6236 -6 726 189 24 6 chrX 120669248 120669412 -56304728 - L1MA7 LINE L1 -2 6289 6123 1223 292 37 22 chrX 120669437 120669841 -56304299 + L1M2 LINE L1 43 452 -6397 322 339 51 8 chrX 120670168 120670286 -56303854 + L1M2 LINE L1 665 787 -6062 5905 259 36 17 chrX 120670716 120673115 -56301025 + L1M2 LINE L1 1067 3511 -3337 * 7121 183 59 27 chrX 120673114 120674453 -56299687 + L1MA2 LINE L1 1078 2465 -5100 180 0 0 0 chrX 120674453 120674473 -56299667 + (TAA)n Simple_repeat Simple_repeat 2 21 0 7121 183 59 27 chrX 120674473 120674525 -56299615 + L1MA2 LINE L1 2465 2514 -5051 6609 159 50 7 chrX 120674574 120675693 -56298447 - THE1-int LTR MaLR -413 1167 1 1999 135 65 17 chrX 120675695 120676051 -56298089 - THE1C LTR MaLR -2 373 1 5972 161 31 6 chrX 120676051 120677567 -56296573 + L1MA2 LINE L1 6163 7723 0 25 51 0 0 chrX 120677703 120677742 -56296398 + AT_rich Low_complexity Low_complexity 1 39 0 2293 141 3 24 chrX 120677834 120677873 -56296267 - THE1C LTR MaLR 0 375 337 2358 57 0 3 chrX 120677873 120678204 -56295936 + AluY SINE Alu 1 330 0 2293 141 3 24 chrX 120678204 120678546 -56295594 - THE1C LTR MaLR -38 337 1 730 263 0 0 chrX 120678599 120678778 -56295362 - MER105 DNA DNA -21 183 5 1354 266 91 42 chrX 120679149 120679744 -56294396 - MLT1E3 LTR MaLR 0 624 1 228 405 50 0 chrX 120679974 120680095 -56294045 - L2 LINE L2 -209 3063 2937 488 248 55 0 chrX 120680253 120680362 -56293778 + MER94 DNA DNA 1 115 -19 574 27 0 0 chrX 120680725 120680799 -56293341 + L1PA3 LINE L1 6082 6155 0 22 35 0 0 chrX 120681355 120681384 -56292756 + AT_rich Low_complexity Low_complexity 1 29 0 1469 217 67 42 chrX 120682131 120682601 -56291539 + MER41B LTR ERV1 162 468 -10 2538 272 36 32 chrX 120683009 120684248 -56289892 - L1ME1 LINE L1 -26 6140 4901 488 237 17 0 chrX 120684261 120684379 -56289761 - MLT1D LTR MaLR 0 505 386 42597 34 24 1 chrX 120684383 120690395 -56283745 + L1PA3 LINE L1 2 6155 0 1076 281 94 43 chrX 120690406 120690876 -56283264 - MLT1E2 LTR MaLR -131 495 2 1266 253 119 7 chrX 120690878 120691459 -56282681 - L1ME1 LINE L1 -1255 4891 4246 634 211 23 0 chrX 120691482 120691610 -56282530 + MSTC LTR MaLR 1 131 -297 598 266 14 0 chrX 120691623 120691766 -56282374 + MSTC LTR MaLR 252 396 0 2118 263 48 46 chrX 120691770 120692926 -56281214 - L1ME1 LINE L1 -1923 4223 3066 2125 257 28 15 chrX 120692943 120693814 -56280326 - L1ME1 LINE L1 -190 6045 5165 962 259 71 9 chrX 120693826 120694246 -56279894 - L1ME1 LINE L1 -5033 1363 918 232 373 18 0 chrX 120694442 120694552 -56279588 - L2 LINE L2 -947 2367 2256 237 358 0 0 chrX 120694611 120694692 -56279448 + L2 LINE L2 3187 3267 -5 2903 127 5 13 chrX 120694938 120695386 -56278754 + MLT2A1 LTR ERVL 1 444 0 12911 101 6 2 chrX 120695386 120697173 -56276967 + HERVL-A1 LTR ERVL 1 1794 -3860 * 23536 92 19 13 chrX 120697171 120700428 -56273712 + HERVL-A1 LTR ERVL 2377 5654 0 2728 117 2 10 chrX 120700428 120700831 -56273309 + MLT2A1 LTR ERVL 1 400 -44 402 73 0 0 chrX 120700863 120700918 -56273222 + MLT2A1 LTR ERVL 399 453 0 6586 150 7 6 chrX 120701459 120703035 -56271105 + L1MA2 LINE L1 4728 6304 0 22 0 0 0 chrX 120703734 120703756 -56270384 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 120704296 120704318 -56269822 + AT_rich Low_complexity Low_complexity 1 22 0 301 274 0 53 chrX 120704353 120704448 -56269692 + L1MC4 LINE L1 6613 6702 -1340 257 200 113 0 chrX 120704463 120704543 -56269597 + L1MC4 LINE L1 6614 6702 -1340 289 202 0 43 chrX 120704550 120704570 -56269570 - L1MC4 LINE L1 -1339 6703 6684 234 150 0 0 chrX 120704570 120704610 -56269530 + (TA)n Simple_repeat Simple_repeat 1 40 0 289 202 0 43 chrX 120704610 120704644 -56269496 - L1MC4 LINE L1 -1358 6684 6614 265 244 47 0 chrX 120704614 120704700 -56269440 - L1MC4 LINE L1 -1339 6703 6614 * 420 293 0 0 chrX 120704644 120704791 -56269349 + (TA)n Simple_repeat Simple_repeat 2 148 0 241 196 0 0 chrX 120704786 120704832 -56269308 - L1MC4 LINE L1 -1339 6703 6658 * 5150 129 18 32 chrX 120704977 120705850 -56268290 + Tigger1 DNA MER2_type 14 874 -1544 816 107 0 8 chrX 120705850 120705981 -56268159 - L1M2 LINE L1 -846 5445 5316 5143 146 44 5 chrX 120705999 120707124 -56267016 - L1PA15 LINE L1 -10 6871 5708 1333 213 39 11 chrX 120707102 120707463 -56266677 - L1M2 LINE L1 -806 6056 5686 * 840 158 129 12 chrX 120707465 120707636 -56266504 + Tigger1 DNA MER2_type 2228 2418 0 1459 244 28 71 chrX 120707641 120708257 -56265883 - L1ME3 LINE L1 -47 6115 5527 529 326 74 5 chrX 120708849 120709064 -56265076 - MIR SINE MIR -12 250 21 1842 130 45 0 chrX 120709127 120709416 -56264724 - AluSq SINE Alu 0 302 2 4506 196 11 0 chrX 120710039 120710939 -56263201 - L1PA15 LINE L1 -2026 4836 3927 5313 149 13 1 chrX 120710939 120712892 -56261248 + L1PA13 LINE L1 4162 6163 0 25 51 0 0 chrX 120713257 120713296 -56260844 + AT_rich Low_complexity Low_complexity 1 39 0 955 136 19 82 chrX 120713819 120714047 -56260093 + MER61-int LTR ERV1 674 1794 -4152 180 0 0 0 chrX 120714350 120714370 -56259770 + (C)n Simple_repeat Simple_repeat 1 20 0 3416 172 55 16 chrX 120714453 120715359 -56258781 + MER61-int LTR ERV1 1213 4612 -2384 506 125 10 10 chrX 120715360 120715456 -56258684 + L1P LINE L1 5235 5330 -816 * 6450 33 0 0 chrX 120715455 120716239 -56257901 + L1P LINE L1 4383 5166 -980 1608 187 49 3 chrX 120716242 120716611 -56257529 - L1PA15 LINE L1 -4511 2352 1967 * 4876 238 75 60 chrX 120716602 120719210 -56254930 - L1M4c LINE L1 -3986 2660 1 25 51 0 0 chrX 120719337 120719376 -56254764 + AT_rich Low_complexity Low_complexity 1 39 0 684 317 5 14 chrX 120719399 120719620 -56254520 + MIR SINE MIR 42 260 -2 235 246 0 14 chrX 120720332 120720401 -56253739 + L1MC4 LINE L1 6636 6703 -1339 22 0 0 0 chrX 120720486 120720508 -56253632 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 120721051 120721073 -56253067 + AT_rich Low_complexity Low_complexity 1 22 0 310 256 113 29 chrX 120721470 120721708 -56252432 - L1ME4a LINE L1 -5 6116 5859 28 29 0 0 chrX 120721848 120721883 -56252257 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 120722640 120722675 -56251465 + AT_rich Low_complexity Low_complexity 1 35 0 470 267 0 26 chrX 120723498 120723614 -56250526 + L2 LINE L2 3200 3312 -1 214 214 18 0 chrX 120724291 120724347 -56249793 + (TA)n Simple_repeat Simple_repeat 2 58 0 409 307 68 22 chrX 120725135 120725323 -56248817 - MIR SINE MIR -62 146 1 31 68 0 0 chrX 120726034 120726093 -56248047 + AT_rich Low_complexity Low_complexity 1 59 0 1379 159 100 19 chrX 120726401 120726554 -56247586 - L1MA9 LINE L1 0 6312 6173 233 75 25 0 chrX 120726554 120726594 -56247546 + (TG)n Simple_repeat Simple_repeat 1 41 0 1379 159 100 19 chrX 120726594 120726761 -56247379 - L1MA9 LINE L1 -139 6173 5966 24 67 0 0 chrX 120726939 120726984 -56247156 + AT_rich Low_complexity Low_complexity 1 45 0 1288 118 145 14 chrX 120727286 120727507 -56246633 - AluSg1 SINE Alu -59 250 1 228 35 0 0 chrX 120727511 120727540 -56246600 + (GA)n Simple_repeat Simple_repeat 2 30 0 379 298 98 62 chrX 120728274 120728630 -56245510 + HAL1b LINE L1 222 590 -758 234 367 0 0 chrX 120729454 120729533 -56244607 - L2 LINE L2 0 3313 3235 372 77 0 0 chrX 120730219 120730271 -56243869 + (TG)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chrX 120730578 120730605 -56243535 + AT_rich Low_complexity Low_complexity 1 27 0 3517 38 0 0 chrX 120730762 120731186 -56242954 - L1PA4 LINE L1 -3 6152 5729 4206 21 0 0 chrX 120731186 120731885 -56242255 + L1PA4 LINE L1 5044 5742 -413 21 0 0 0 chrX 120731889 120731910 -56242230 + AT_rich Low_complexity Low_complexity 1 21 0 1598 152 27 43 chrX 120731910 120732284 -56241856 - L1MA3 LINE L1 0 6305 5938 2322 100 0 0 chrX 120732290 120732599 -56241541 - AluSc SINE Alu 0 309 1 654 132 0 0 chrX 120732631 120732737 -56241403 - AluSc SINE Alu -3 306 201 4167 154 22 6 chrX 120732743 120733946 -56240194 - L1MA3 LINE L1 -365 5940 4718 439 153 12 0 chrX 120733946 120734031 -56240109 - L1PA15 LINE L1 -1 6164 6079 13740 182 13 6 chrX 120734051 120734998 -56239142 - L1PA15 LINE L1 -280 5888 4949 3719 194 114 133 chrX 120734998 120736787 -56237353 - MER52A LTR ERV1 0 1755 1 13740 182 13 6 chrX 120736787 120739179 -56234961 - L1PA15 LINE L1 -1219 4949 2525 9401 198 33 10 chrX 120739166 120741303 -56232837 - L1MA3 LINE L1 -1389 4757 2572 * 1647 226 17 3 chrX 120741358 120741716 -56232424 - MLT1A1 LTR MaLR -2 363 1 21 36 0 0 chrX 120742253 120742281 -56231859 + AT_rich Low_complexity Low_complexity 1 28 0 864 283 0 23 chrX 120742346 120742565 -56231575 - MIR SINE MIR -41 221 8 26 0 0 0 chrX 120743481 120743507 -56230633 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 120743530 120743552 -56230588 + AT_rich Low_complexity Low_complexity 1 22 0 322 323 90 15 chrX 120743643 120743776 -56230364 + L2 LINE L2 3171 3313 0 523 194 0 46 chrX 120745285 120745393 -56228747 + MIR SINE MIR 5 107 -155 399 296 14 14 chrX 120747098 120747240 -56226900 - MLT1I LTR MaLR -19 390 249 461 220 38 30 chrX 120747277 120747409 -56226731 - MLT1I LTR MaLR -275 134 2 24 53 0 0 chrX 120748485 120748523 -56225617 + AT_rich Low_complexity Low_complexity 1 38 0 489 345 23 0 chrX 120748548 120748722 -56225418 - MIR SINE MIR -65 197 20 7675 22 2 0 chrX 120749361 120750257 -56223883 + L1PA3 LINE L1 5255 6152 -3 23 0 0 0 chrX 120750297 120750320 -56223820 + AT_rich Low_complexity Low_complexity 1 23 0 441 0 0 0 chrX 120753941 120753990 -56220150 + (TA)n Simple_repeat Simple_repeat 2 50 0 262 231 272 69 chrX 120754069 120754242 -56219898 + L2 LINE L2 2320 2527 -787 351 0 0 0 chrX 120754242 120754281 -56219859 + (TC)n Simple_repeat Simple_repeat 2 40 0 596 131 0 9 chrX 120754281 120754289 -56219851 + (TA)n Simple_repeat Simple_repeat 2 9 -98 339 297 0 11 chrX 120754289 120754380 -56219760 - L1MC4 LINE L1 -1339 6703 6614 596 131 0 9 chrX 120754380 120754388 -56219752 + (TA)n Simple_repeat Simple_repeat 9 107 0 667 291 91 78 chrX 120754390 120754441 -56219699 + L2 LINE L2 2534 2583 -731 2081 191 8 0 chrX 120754441 120754803 -56219337 - MLT1A1 LTR MaLR 0 365 1 667 291 91 78 chrX 120754803 120755160 -56218980 + L2 LINE L2 2583 2947 -367 219 121 48 24 chrX 120757270 120757353 -56216787 + (TA)n Simple_repeat Simple_repeat 2 86 0 247 221 13 52 chrX 120757392 120757469 -56216671 - MLT2C1 LTR ERVL -54 343 270 238 197 110 87 chrX 120757542 120757669 -56216471 - MLT1E2 LTR MaLR -375 251 122 * 655 267 24 19 chrX 120757578 120757788 -56216352 - MLT2C1 LTR ERVL -175 222 12 21 0 0 0 chrX 120758078 120758099 -56216041 + AT_rich Low_complexity Low_complexity 1 21 0 2998 83 57 7 chrX 120758726 120759149 -56214991 - MLT2A1 LTR ERVL 0 444 1 8958 76 6 0 chrX 120759149 120760291 -56213849 - HERVL-A1 LTR ERVL 0 5654 4506 2924 42 0 0 chrX 120760299 120760653 -56213487 - L1PA7 LINE L1 -13 6141 5788 4065 73 1 2 chrX 120760653 120761539 -56212601 + L1PA7 LINE L1 4893 5778 -376 4067 95 4 0 chrX 120761544 120762083 -56212057 - HERVL-A1 LTR ERVL -1143 4511 3971 28107 84 4 4 chrX 120762097 120765793 -56208347 - HERVL-A1 LTR ERVL -1958 3696 1 291 85 0 51 chrX 120765793 120765852 -56208288 - MLT2A1 LTR ERVL 0 444 389 308 283 0 22 chrX 120765858 120765950 -56208190 + L1MC4 LINE L1 6612 6701 -1341 1092 111 0 0 chrX 120765951 120766131 -56208009 + (TA)n Simple_repeat Simple_repeat 1 180 0 261 128 0 0 chrX 120766145 120766192 -56207948 - HERVL LTR ERVL -4595 1059 1013 399 210 12 19 chrX 120766192 120766354 -56207786 + (TA)n Simple_repeat Simple_repeat 2 162 0 2899 85 20 10 chrX 120766358 120766759 -56207381 - MLT2A1 LTR ERVL -39 405 1 2819 211 69 67 chrX 120766816 120767580 -56206560 + L1MCa LINE L1 19 784 -5642 667 235 0 0 chrX 120767593 120767729 -56206411 - FLAM_C SINE Alu -7 136 1 503 141 0 141 chrX 120767732 120767881 -56206259 + L1MCa LINE L1 769 896 -5011 1091 213 7 87 chrX 120767885 120768171 -56205969 + MLT1A1 LTR MaLR 101 363 -2 1487 254 61 30 chrX 120768192 120768985 -56205155 + L1MCa LINE L1 902 1670 -4758 369 0 0 0 chrX 120768985 120769026 -56205114 + (CA)n Simple_repeat Simple_repeat 2 42 0 1487 254 61 30 chrX 120769026 120769100 -56205040 + L1MCa LINE L1 1670 1740 -4688 1000 55 0 0 chrX 120769100 120769227 -56204913 + L1PA3 LINE L1 6029 6155 0 1487 254 61 30 chrX 120769227 120769270 -56204870 + L1MCa LINE L1 1740 1875 -4553 1547 253 45 9 chrX 120769332 120770093 -56204047 + L1MCa LINE L1 2057 2853 -3573 3077 143 4 4 chrX 120770093 120770590 -56203550 - MER75 DNA T2_type -17 497 1 1188 240 35 0 chrX 120770592 120770996 -56203144 + L1MCa LINE L1 3051 3468 -2958 11050 210 41 18 chrX 120771000 120773536 -56200604 + L1PA13 LINE L1 88 2692 -4105 7369 180 27 28 chrX 120773569 120775862 -56198278 + L1P3 LINE L1 3 2348 -4113 698 79 16 32 chrX 120775863 120775989 -56198151 + (GAAA)n Simple_repeat Simple_repeat 2 125 0 2863 121 5 12 chrX 120775993 120776415 -56197725 - L1P3 LINE L1 -6042 419 1 4009 205 27 23 chrX 120776435 120777899 -56196241 + L1MB2 LINE L1 4696 6165 -6 482 366 25 38 chrX 120777899 120778219 -56195921 + L2 LINE L2 2829 3144 -169 845 308 79 53 chrX 120778224 120778808 -56195332 + L2 LINE L2 2702 3301 -12 7333 42 8 31 chrX 120779021 120780473 -56193667 - L1PA5 LINE L1 -1 6153 4718 5299 39 8 0 chrX 120780473 120781115 -56193025 + L1PA5 LINE L1 4051 4697 -1449 238 288 0 0 chrX 120781436 120781509 -56192631 - MARNA DNA Mariner -345 241 169 209 380 120 6 chrX 120781597 120781755 -56192385 + MIR3 SINE MIR 30 205 -3 433 256 12 55 chrX 120782469 120782633 -56191507 + L1MCc LINE L1 14 170 -6253 13787 180 28 11 chrX 120782734 120783871 -56190269 + L1MA2 LINE L1 1649 2764 -4960 315 0 0 0 chrX 120783871 120783906 -56190234 + (CAA)n Simple_repeat Simple_repeat 2 36 0 13787 180 28 11 chrX 120783906 120784096 -56190044 + L1MA2 LINE L1 2764 2949 -4775 1547 98 39 16 chrX 120784096 120784350 -56189790 + L1PA12 LINE L1 5909 6168 0 13787 180 28 11 chrX 120784350 120788484 -56185656 + L1MA2 LINE L1 2949 7216 -508 423 0 0 0 chrX 120788484 120788531 -56185609 + (CA)n Simple_repeat Simple_repeat 2 48 0 13787 180 28 11 chrX 120788531 120788574 -56185566 + L1MA2 LINE L1 7216 7257 -467 16720 207 18 55 chrX 120788627 120796784 -56177356 - L1PA14 LINE L1 -9 7590 6 2956 123 13 0 chrX 120796800 120797272 -56176868 + L1MA2 LINE L1 7244 7721 -2 1629 266 84 26 chrX 120797289 120798006 -56176134 + L1ME1 LINE L1 3510 4267 -1879 1477 271 25 24 chrX 120798005 120798334 -56175806 + L1ME1 LINE L1 5553 5885 -281 * 1621 125 122 29 chrX 120798334 120798677 -56175463 + THE1C LTR MaLR 1 375 0 1477 271 25 24 chrX 120798677 120798857 -56175283 + L1ME1 LINE L1 5885 6063 -103 350 269 120 38 chrX 120798849 120799214 -56174926 + L1MC4a LINE L1 6315 6584 -1224 * 227 278 52 21 chrX 120799216 120799313 -56174827 - L2 LINE L2 -106 3207 3108 192 268 0 0 chrX 120799360 120799431 -56174709 + (TATATG)n Simple_repeat Simple_repeat 6 76 0 192 125 0 0 chrX 120799440 120799472 -56174668 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 609 236 0 0 chrX 120799476 120799624 -56174516 + L1 LINE L1 4901 5048 -1098 361 357 16 0 chrX 120799626 120799752 -56174388 - L2 LINE L2 -281 3032 2905 327 49 0 0 chrX 120800138 120800179 -56173961 + (TG)n Simple_repeat Simple_repeat 2 42 0 1916 145 0 10 chrX 120800179 120800468 -56173672 - AluSx SINE Alu -26 286 1 31 26 0 0 chrX 120800540 120800578 -56173562 + AT_rich Low_complexity Low_complexity 1 38 0 1237 77 6 6 chrX 120800968 120801137 -56173003 - THE1A LTR MaLR 0 355 187 395 22 0 0 chrX 120801138 120801184 -56172956 - THE1A LTR MaLR -309 46 1 532 349 50 27 chrX 120803876 120804177 -56169963 + MLT1I LTR MaLR 102 409 0 233 367 71 56 chrX 120804264 120804460 -56169680 - L3 LINE CR1 -34 1543 1345 1193 262 27 57 chrX 120804566 120804878 -56169262 + L1M4c LINE L1 1472 1792 -4592 2091 144 0 0 chrX 120804878 120805184 -56168956 + AluSx SINE Alu 1 306 -6 1193 262 27 57 chrX 120805184 120805808 -56168332 + L1M4c LINE L1 1792 2483 -3901 923 204 105 46 chrX 120805910 120806195 -56167945 + MLT1F1 LTR MaLR 266 567 0 1986 194 28 13 chrX 120806611 120806998 -56167142 + MSTD LTR MaLR 1 393 -3 214 156 22 22 chrX 120807040 120807085 -56167055 + (TA)n Simple_repeat Simple_repeat 2 46 0 239 333 0 23 chrX 120807831 120807918 -56166222 - L2 LINE L2 0 3313 3229 3356 158 56 3 chrX 120808067 120808673 -56165467 - L1PB4 LINE L1 -1 6155 5518 1561 196 35 68 chrX 120808963 120809310 -56164830 + MLT1B LTR MaLR 1 335 -55 1672 164 87 0 chrX 120809310 120809620 -56164520 + MER1B DNA MER1_type 1 337 0 1561 196 35 68 chrX 120809620 120809671 -56164469 + MLT1B LTR MaLR 335 386 -4 192 380 11 11 chrX 120809751 120809843 -56164297 - L2 LINE L2 -492 2822 2731 853 326 62 19 chrX 120809957 120810390 -56163750 - MLT1L LTR MaLR -72 543 92 2063 105 31 0 chrX 120810396 120810682 -56163458 - AluSx SINE Alu -16 296 2 204 179 0 0 chrX 120810735 120810774 -56163366 + A-rich Low_complexity Low_complexity 1 39 0 645 304 143 39 chrX 120810836 120811250 -56162890 - L2 LINE L2 -586 2728 2272 598 165 0 0 chrX 120811300 120811397 -56162743 - MSTD LTR MaLR -299 97 1 1605 203 55 42 chrX 120811399 120812062 -56162078 - L1M4 LINE L1 -454 5730 5064 823 265 26 45 chrX 120812098 120812411 -56161729 + L1ME3 LINE L1 5785 6091 -71 264 235 0 0 chrX 120812414 120812482 -56161658 + (TA)n Simple_repeat Simple_repeat 1 68 0 1911 57 4 19 chrX 120812932 120813195 -56160945 - AluY SINE Alu -6 305 47 259 238 0 100 chrX 120813543 120813623 -56160517 - L2 LINE L2 0 3313 3242 464 329 6 24 chrX 120813646 120813810 -56160330 - L2 LINE L2 0 3313 3153 21 0 0 0 chrX 120813841 120813862 -56160278 + AT_rich Low_complexity Low_complexity 1 21 0 287 361 133 19 chrX 120815301 120815625 -56158515 - L2 LINE L2 -534 2780 2420 27 73 0 0 chrX 120816509 120816564 -56157576 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chrX 120816589 120816610 -56157530 + AT_rich Low_complexity Low_complexity 1 21 0 2658 239 38 14 chrX 120816707 120817422 -56156718 - L1M3c LINE L1 -4587 1554 823 260 309 21 11 chrX 120817525 120817619 -56156521 - L1M3c LINE L1 -5330 811 717 797 296 106 47 chrX 120817697 120818120 -56156020 - L1M3c LINE L1 -5690 451 4 246 178 89 56 chrX 120818679 120818769 -56155371 - MLT1I LTR MaLR 0 409 317 427 293 66 30 chrX 120818891 120819058 -56155082 - MLT1I LTR MaLR -207 202 30 28 0 0 0 chrX 120819202 120819230 -56154910 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chrX 120819682 120819711 -56154429 + AT_rich Low_complexity Low_complexity 1 29 0 4668 201 5 0 chrX 120819737 120820526 -56153614 - L1PA12 LINE L1 -6230 1351 559 1020 186 41 16 chrX 120820529 120820723 -56153417 - L1PA12 LINE L1 -7381 200 2 853 233 39 16 chrX 120820730 120821039 -56153101 - L1 LINE L1 -2841 4724 4409 2607 94 8 0 chrX 120821041 120821393 -56152747 + THE1A LTR MaLR 1 355 0 9079 94 14 2 chrX 120821393 120822630 -56151510 + THE1A-int LTR MaLR 1 1252 -328 5415 246 110 49 chrX 120822629 120824609 -56149531 - L1 LINE L1 -5070 2495 22 * 656 235 59 20 chrX 120824628 120824832 -56149308 + L1ME LINE L1 5052 5263 -883 1288 250 81 16 chrX 120824834 120825350 -56148790 - MER45B DNA AcHobo 0 1040 491 690 230 39 6 chrX 120825362 120825540 -56148600 + L1ME LINE L1 5391 5574 -588 374 268 84 79 chrX 120825585 120826331 -56147809 + L1M4 LINE L1 2477 3226 -2920 3733 230 31 6 chrX 120826335 120827812 -56146328 - L1M1 LINE L1 -5879 1686 71 * 6189 171 14 1 chrX 120827807 120828900 -56145240 - L1P LINE L1 -1855 4291 3185 4954 211 6 6 chrX 120828899 120829972 -56144168 + L1P LINE L1 2127 3199 -2947 * 231 271 0 0 chrX 120830168 120830227 -56143913 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 636 287 61 49 chrX 120830698 120831357 -56142783 + L1MEc LINE L1 792 1458 -4938 2444 47 0 0 chrX 120831364 120831660 -56142480 + AluY SINE Alu 2 297 -14 804 98 0 16 chrX 120831767 120831889 -56142251 + AluSp/q SINE Alu 185 304 -9 1065 283 129 21 chrX 120831890 120832007 -56142133 + L1MEc LINE L1 2105 2208 -4007 1848 225 60 58 chrX 120832007 120832558 -56141582 + MLT2B3 LTR ERVL 3 554 0 1065 283 129 21 chrX 120832558 120833595 -56140545 + L1MEc LINE L1 2208 3335 -2880 1791 199 48 2 chrX 120833725 120834158 -56139982 - L1M4c LINE L1 -1489 5155 4703 4362 181 17 18 chrX 120834160 120834897 -56139243 + L1MA9 LINE L1 4618 5363 -949 2546 56 0 0 chrX 120834897 120835200 -56138940 + AluY SINE Alu 1 303 -8 4362 181 17 18 chrX 120835200 120835918 -56138222 + L1MA9 LINE L1 5363 6081 -231 434 192 58 25 chrX 120835922 120836042 -56138098 + L1MA9 LINE L1 6182 6305 -7 * 727 218 11 6 chrX 120836036 120836210 -56137930 + L1M4 LINE L1 4747 4921 -1225 * 1021 202 68 27 chrX 120836199 120836535 -56137605 + L1MC4a LINE L1 6927 7276 -532 753 259 19 9 chrX 120836537 120836753 -56137387 - L1M4c LINE L1 -1914 4730 4513 1937 127 0 0 chrX 120836772 120837064 -56137076 + L1PA8 LINE L1 5865 6156 -16 799 246 0 21 chrX 120837108 120837295 -56136845 - MLT1A1 LTR MaLR 0 365 183 1127 219 16 0 chrX 120837298 120837540 -56136600 - L1M4c LINE L1 -2217 4427 4182 733 152 11 38 chrX 120837546 120837730 -56136410 + CT-rich Low_complexity Low_complexity 1 179 0 4258 233 30 7 chrX 120837731 120838908 -56135232 - L1M4c LINE L1 -2451 4193 2990 227 250 0 0 chrX 120838909 120838961 -56135179 + LTR30 LTR ERV1 1 52 -670 3199 88 169 150 chrX 120838963 120839923 -56134217 + LTR12 LTR ERV1 57 712 -2 2157 222 100 26 chrX 120839923 120840713 -56133427 - L1PBa LINE L1 -3650 3212 2362 * 5478 40 0 0 chrX 120840712 120841381 -56132759 + L1P LINE L1 4498 5166 -980 1649 186 46 3 chrX 120841384 120841754 -56132386 - L1PBa LINE L1 -4511 2352 1967 * 5460 235 76 54 chrX 120841745 120844336 -56129804 - L1M4c LINE L1 -3986 2660 1 25 51 0 0 chrX 120844463 120844502 -56129638 + AT_rich Low_complexity Low_complexity 1 39 0 684 317 5 14 chrX 120844525 120844746 -56129394 + MIR SINE MIR 42 260 -2 2074 201 69 0 chrX 120845184 120845607 -56128533 + LTR47A LTR ERVL 1 452 0 384 22 0 0 chrX 120845617 120845662 -56128478 + (CA)n Simple_repeat Simple_repeat 1 45 0 184 246 145 0 chrX 120846517 120846586 -56127554 - MIR SINE MIR 0 262 184 * 264 371 21 10 chrX 120846577 120846674 -56127466 - L2 LINE L2 -16 3297 3200 388 267 0 82 chrX 120846709 120846844 -56127296 - MIR SINE MIR -121 141 18 197 65 32 0 chrX 120847129 120847160 -56126980 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 336 408 71 0 chrX 120847593 120847789 -56126351 + L1ME LINE L1 236 445 -5625 638 282 17 33 chrX 120848012 120848313 -56125827 + L1ME LINE L1 566 861 -5222 3775 146 84 21 chrX 120848325 120849071 -56125069 - L1MA7 LINE L1 0 6291 5499 789 223 61 54 chrX 120849067 120849363 -56124777 + L1ME LINE L1 845 1142 -4938 * 192 318 171 47 chrX 120850102 120850231 -56123909 - L2 LINE L2 -212 3060 2916 21 0 0 0 chrX 120850562 120850583 -56123557 + AT_rich Low_complexity Low_complexity 1 21 0 1979 189 78 2 chrX 120851190 120851586 -56122554 - MSTB LTR MaLR 0 426 1 24 0 0 0 chrX 120851603 120851627 -56122513 + AT_rich Low_complexity Low_complexity 1 24 0 711 295 13 18 chrX 120851901 120852125 -56122015 - MER115 DNA AcHobo -1 692 470 1584 222 18 31 chrX 120852195 120852656 -56121484 + MER89 LTR ERV1 1 554 -5 549 362 152 16 chrX 120852675 120852990 -56121150 - MER115 DNA AcHobo -317 376 19 285 267 56 15 chrX 120854762 120854872 -56119268 + MIR SINE MIR 41 151 -67 222 198 47 0 chrX 120855195 120855281 -56118859 + CT-rich Low_complexity Low_complexity 2 91 0 381 351 72 26 chrX 120855445 120855930 -56118210 - L2 LINE L2 -432 2882 2315 2601 147 29 0 chrX 120855957 120856373 -56117767 + MSTA LTR MaLR 1 428 0 304 298 124 16 chrX 120856588 120856709 -56117431 + L2 LINE L2 3180 3313 0 413 267 69 0 chrX 120856866 120856982 -56117158 + L2 LINE L2 3190 3313 0 721 351 151 19 chrX 120857021 120857721 -56116419 - L3 LINE CR1 -304 1273 481 1459 0 0 0 chrX 120857745 120857908 -56116232 - L1HS LINE L1 0 6155 5993 246 320 27 0 chrX 120858058 120858133 -56116007 - L3 LINE CR1 -1118 459 383 1815 175 16 93 chrX 120858567 120858970 -56115170 + MSTB1 LTR MaLR 1 365 -67 2331 115 0 0 chrX 120858970 120859283 -56114857 - AluSq SINE Alu 0 313 1 1815 175 16 93 chrX 120859283 120859334 -56114806 + MSTB1 LTR MaLR 365 418 -14 2569 193 46 48 chrX 120859975 120860606 -56113534 + LTR27 LTR ERV1 2 631 -5 352 275 94 43 chrX 120860607 120860789 -56113351 + LTR27-int LTR ERV1 6 161 -6835 4366 198 125 41 chrX 120860827 120861971 -56112169 + LTR27-int LTR ERV1 408 1792 -5413 260 149 0 104 chrX 120861939 120862006 -56112134 + LTR27-int LTR ERV1 2179 2238 -5180 * 2029 133 3 3 chrX 120862031 120862325 -56111815 - AluSc SINE Alu -15 294 1 414 203 0 14 chrX 120862326 120862400 -56111740 + LTR28-int LTR ERV1 3923 3995 -885 4104 151 51 19 chrX 120862421 120864088 -56110052 + LTR28-int LTR ERV1 632 1872 -3345 505 125 10 10 chrX 120864089 120864185 -56109955 + L1PA10 LINE L1 5235 5330 -816 * 1457 35 5 0 chrX 120864184 120865700 -56108440 + L1PA4 LINE L1 4383 6043 -125 5253 130 15 1 chrX 120865706 120866524 -56107616 + L1PA10 LINE L1 5317 6145 -23 12205 160 30 20 chrX 120866524 120869209 -56104931 + LTR28-int LTR ERV1 3253 6992 -4 887 149 43 0 chrX 120869222 120869363 -56104777 + LTR28 LTR ERV1 10 156 -864 2286 215 15 49 chrX 120869505 120870161 -56103979 + LTR27 LTR ERV1 2 635 -1 403 277 109 22 chrX 120870431 120870568 -56103572 - MIR SINE MIR -30 232 84 242 28 0 28 chrX 120870614 120870650 -56103490 + (TG)n Simple_repeat Simple_repeat 2 36 0 358 172 0 0 chrX 120871689 120871747 -56102393 + MER50 LTR ERV1 59 116 -618 * 1057 169 0 11 chrX 120871736 120871919 -56102221 + MER50 LTR ERV1 547 727 -7 23 0 0 0 chrX 120872009 120872032 -56102108 + AT_rich Low_complexity Low_complexity 1 23 0 11267 31 0 4 chrX 120872228 120874336 -56099804 + L1PA3 LINE L1 4048 6152 -3 203 250 33 11 chrX 120874903 120874995 -56099145 + (TA)n Simple_repeat Simple_repeat 2 95 0 235 102 20 20 chrX 120875022 120875071 -56099069 + (TA)n Simple_repeat Simple_repeat 1 49 0 11542 196 16 8 chrX 120875449 120877914 -56096226 + L1PA13 LINE L1 1939 4422 -1724 * 29609 113 13 10 chrX 120877913 120884340 -56089800 + L1PA8 LINE L1 6 6476 -11 5490 115 40 6 chrX 120884343 120886081 -56088059 + L1PA13 LINE L1 4398 6162 -1 3734 183 9 65 chrX 120886104 120886991 -56087149 - L1PA16 LINE L1 -7 6159 5323 261 302 82 67 chrX 120887009 120887548 -56086592 + HAL1b LINE L1 58 604 -744 22 0 0 0 chrX 120887751 120887773 -56086367 + AT_rich Low_complexity Low_complexity 1 22 0 1231 204 24 16 chrX 120887940 120888195 -56085945 + AluJo SINE Alu 1 257 -55 328 144 58 23 chrX 120888375 120888548 -56085592 + (TA)n Simple_repeat Simple_repeat 2 180 0 1133 247 70 52 chrX 120888591 120888771 -56085369 + L1MC5 LINE L1 6583 6758 -1203 369 109 0 0 chrX 120888771 120888826 -56085314 + (TA)n Simple_repeat Simple_repeat 1 55 0 1133 247 70 52 chrX 120888826 120889181 -56084959 + L1MC5 LINE L1 6758 7130 -831 1971 114 3 43 chrX 120889181 120889480 -56084660 + AluSx SINE Alu 1 287 -25 2798 169 34 11 chrX 120889582 120890134 -56084006 + MER34B LTR ERV1 1 565 0 1583 180 30 60 chrX 120890548 120890881 -56083259 + MLT1A1 LTR MaLR 1 323 -42 282 143 0 0 chrX 120891486 120891528 -56082612 + MLT1A1 LTR MaLR 319 360 -5 5960 207 33 23 chrX 120892145 120893123 -56081017 - L1 LINE L1 -1470 4676 3676 827 89 0 8 chrX 120893123 120893246 -56080894 + (TTTC)n Simple_repeat Simple_repeat 3 124 0 5960 207 33 23 chrX 120893246 120893852 -56080288 - L1 LINE L1 -2470 3676 3077 1400 293 5 2 chrX 120893854 120894257 -56079883 + L1PBa LINE L1 1236 1639 -5224 * 4348 173 50 3 chrX 120894226 120895372 -56078768 + L1PBb LINE L1 5 1276 -4928 844 93 33 0 chrX 120895372 120895522 -56078618 + (TA)n Simple_repeat Simple_repeat 2 156 0 4348 173 50 3 chrX 120895522 120895795 -56078345 + L1PBb LINE L1 1276 1535 -4669 222 175 29 48 chrX 120895813 120895916 -56078224 + T-rich Low_complexity Low_complexity 5 105 0 1467 216 27 86 chrX 120897443 120897831 -56076309 + MLT2D LTR ERVL 1 362 -52 315 0 0 0 chrX 120897831 120897866 -56076274 + (CA)n Simple_repeat Simple_repeat 2 36 0 1467 216 27 86 chrX 120897866 120897917 -56076223 + MLT2D LTR ERVL 362 414 0 9620 206 38 28 chrX 120897973 120899586 -56074554 + L1PA16 LINE L1 942 2590 -4259 216 0 0 0 chrX 120899586 120899610 -56074530 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 9620 206 38 28 chrX 120899610 120900499 -56073641 + L1PA16 LINE L1 2590 3469 -3380 3981 198 51 15 chrX 120900503 120901754 -56072386 + L1PA16 LINE L1 5568 6860 -9 26 64 0 0 chrX 120902479 120902526 -56071614 + AT_rich Low_complexity Low_complexity 1 47 0 816 354 55 32 chrX 120902671 120903239 -56070901 + L1PA13 LINE L1 788 1368 -6206 258 306 0 0 chrX 120903421 120903493 -56070647 + L1PA13 LINE L1 2111 2182 -5399 741 241 9 18 chrX 120903665 120903885 -56070255 + L1PA13 LINE L1 3335 3552 -4032 * 3487 241 92 21 chrX 120903869 120905550 -56068590 + L1PA16 LINE L1 1941 3695 -3154 989 169 32 0 chrX 120905596 120905785 -56068355 + L1PB1 LINE L1 6 200 -6663 13201 166 58 15 chrX 120905787 120907141 -56066999 + L1PB1 LINE L1 636 1931 -4936 2410 90 0 0 chrX 120907141 120907442 -56066698 + AluSx SINE Alu 1 301 -11 13201 166 58 15 chrX 120907442 120912061 -56062079 + L1PB1 LINE L1 1931 6865 -2 477 255 34 41 chrX 120912078 120912345 -56061795 + L1 LINE L1 3028 3292 -2854 7061 227 27 13 chrX 120912357 120915262 -56058878 + L1PA16 LINE L1 3915 6859 -10 641 209 0 8 chrX 120915392 120915526 -56058614 + L1PA15 LINE L1 6031 6163 -2 180 294 69 78 chrX 120916043 120916145 -56057995 + MIR3 SINE MIR 95 195 -13 386 329 168 0 chrX 120916329 120916663 -56057477 + L2 LINE L2 1567 1956 -1358 1663 195 56 11 chrX 120916771 120917130 -56057010 - THE1C LTR MaLR 0 375 1 8189 146 83 24 chrX 120917130 120917456 -56056684 - THE1C-int LTR MaLR 0 1580 1275 1939 154 3 0 chrX 120917456 120917741 -56056399 + AluSx SINE Alu 1 286 -26 8189 146 83 24 chrX 120917741 120918903 -56055237 - THE1C-int LTR MaLR -305 1275 4 1873 162 56 8 chrX 120918906 120919264 -56054876 - THE1C LTR MaLR 0 375 1 390 225 56 0 chrX 120919280 120919369 -56054771 - MIR SINE MIR -105 157 64 322 159 0 32 chrX 120919441 120919504 -56054636 + L1PA5 LINE L1 6088 6148 -6 678 200 63 6 chrX 120919515 120919690 -56054450 - L1MCa LINE L1 -4199 2227 2043 732 291 50 5 chrX 120919775 120919995 -56054145 + MIR SINE MIR 20 249 -13 4747 197 47 27 chrX 120920309 120921439 -56052701 + L1MC1 LINE L1 5186 6329 -4 820 125 35 0 chrX 120921456 120921600 -56052540 - L1MA5A LINE L1 -1 6296 6148 23 33 0 0 chrX 120921655 120921685 -56052455 + AT_rich Low_complexity Low_complexity 1 30 0 1097 271 44 54 chrX 120922127 120922698 -56051442 + L1M4 LINE L1 39 603 -5939 * 17780 205 68 19 chrX 120922694 120927376 -56046764 + L1MA2 LINE L1 9 5274 -2449 2257 101 0 0 chrX 120927376 120927687 -56046453 + AluSq SINE Alu 1 311 0 17780 205 68 19 chrX 120927687 120929764 -56044376 + L1MA2 LINE L1 5274 7248 -475 3942 274 54 20 chrX 120979786 120981752 -55992388 - L1M2 LINE L1 -2982 3866 1790 * 5554 224 5 13 chrX 120981725 120982825 -55991315 - L1PA15-16 LINE L1 -5758 1091 1 504 265 224 5 chrX 120983581 120983777 -55990363 - MIR SINE MIR -21 241 3 750 291 28 32 chrX 120984167 120984418 -55989722 - MIR SINE MIR -10 252 3 1393 224 0 7 chrX 120984549 120984843 -55989297 + AluJb SINE Alu 5 296 -16 1563 215 3 3 chrX 120985221 120985532 -55988608 - L1PA15-16 LINE L1 -6403 446 136 238 273 73 0 chrX 120986768 120986823 -55987317 + L2 LINE L2 3213 3271 -1 233 147 0 0 chrX 120986939 120986973 -55987167 - MSTA LTR MaLR 0 428 395 2174 86 4 0 chrX 120987015 120987340 -55986800 + AluSp SINE Alu 6 331 0 1844 120 180 9 chrX 120987340 120987673 -55986467 - MSTA LTR MaLR -38 390 1 962 156 76 5 chrX 120987711 120987922 -55986218 - L1MA7 LINE L1 -1833 4313 4088 * 5094 175 71 21 chrX 120987919 120989230 -55984910 + L1MA7 LINE L1 4306 5742 -549 2023 127 0 0 chrX 120989230 120989549 -55984591 - AluSx SINE Alu 0 320 2 5094 175 71 21 chrX 120989549 120990128 -55984012 + L1MA7 LINE L1 5742 6291 0 282 294 98 10 chrX 120990239 120990341 -55983799 - MER5A DNA MER1_type -40 146 28 371 268 87 55 chrX 120990603 120991044 -55983096 + L1MC/D LINE L1 5258 5717 -598 2618 273 83 41 chrX 120991352 120991504 -55982636 + L1ME2 LINE L1 111 255 -5825 574 283 56 15 chrX 120991504 120991702 -55982438 - MER63A DNA MER1_type 0 210 5 2618 273 83 41 chrX 120991702 120994387 -55979753 + L1ME2 LINE L1 255 3087 -2993 1706 120 73 4 chrX 120994387 120994661 -55979479 + AluSx SINE Alu 5 297 -15 2618 273 83 41 chrX 120994661 120994999 -55979141 + L1ME2 LINE L1 3087 3409 -2671 3515 259 106 15 chrX 120995009 120996855 -55977285 + L1ME2 LINE L1 3574 5597 -501 721 246 36 32 chrX 120996853 120997134 -55977006 + L1ME2 LINE L1 5814 6095 -3 * 38 68 0 0 chrX 120997971 120998044 -55976096 + AT_rich Low_complexity Low_complexity 1 73 0 26539 35 1 1 chrX 120998347 121004499 -55969641 - L1PA3 LINE L1 -3 6152 7 246 284 77 93 chrX 121005020 121005214 -55968926 + MIR SINE MIR 22 212 -50 220 349 63 8 chrX 121005501 121005627 -55968513 + L2 LINE L2 3179 3311 -2 247 281 211 44 chrX 121005642 121005756 -55968384 - L2 LINE L2 -1 3312 3180 443 343 51 23 chrX 121005804 121006020 -55968120 - L2 LINE L2 -138 3175 2954 237 299 124 0 chrX 121006132 121006229 -55967911 - L2 LINE L2 -5 3308 3200 243 285 93 29 chrX 121006419 121006591 -55967549 + L1P4 LINE L1 5627 5809 -354 503 326 75 12 chrX 121006605 121006988 -55967152 - MLT1J LTR MaLR -58 453 1 501 245 34 0 chrX 121007002 121007149 -55966991 - MER33 DNA MER1_type -171 153 2 25 51 0 0 chrX 121007356 121007395 -55966745 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chrX 121009634 121009669 -55964471 + AT_rich Low_complexity Low_complexity 1 35 0 1386 143 0 0 chrX 121009709 121009933 -55964207 - L1PA13 LINE L1 -3 6160 5937 14673 205 10 11 chrX 121009934 121012107 -55962033 - L1P LINE L1 -813 5333 3158 516 16 0 0 chrX 121012107 121012168 -55961972 + (TG)n Simple_repeat Simple_repeat 2 62 0 14673 205 10 11 chrX 121012168 121013121 -55961019 - L1P LINE L1 -2988 3158 2210 192 40 0 0 chrX 121013121 121013146 -55960994 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 14673 205 10 11 chrX 121013146 121013469 -55960671 - L1P LINE L1 -3936 2210 1888 267 322 165 25 chrX 121013992 121014113 -55960027 - L2 LINE L2 -2 3270 3133 2021 174 24 29 chrX 121014316 121014876 -55959264 - MLT2A2 LTR ERVL 0 554 1 406 239 0 0 chrX 121015471 121015563 -55958577 - L1P LINE L1 -3549 2597 2506 411 370 18 39 chrX 121015615 121015898 -55958242 + L1PA16 LINE L1 788 1062 -6512 1666 127 112 19 chrX 121015898 121016212 -55957928 - MER61A LTR ERV1 0 343 1 411 370 18 39 chrX 121016212 121016309 -55957831 + L1PA16 LINE L1 1062 1160 -6414 326 224 9 75 chrX 121016682 121016789 -55957351 + L1PA16 LINE L1 2083 2182 -5399 11074 239 21 23 chrX 121017085 121020269 -55953871 + L1PA16 LINE L1 2243 5432 -2172 1984 141 44 44 chrX 121020269 121020631 -55953509 + THE1B LTR MaLR 3 364 0 11298 114 2 4 chrX 121020631 121021128 -55953012 + THE1B-int LTR MaLR 1 497 -1083 2145 122 0 10 chrX 121021128 121021432 -55952708 + AluSc SINE Alu 1 301 -8 11298 114 2 4 chrX 121021432 121022516 -55951624 + THE1B-int LTR MaLR 497 1580 0 2163 137 27 33 chrX 121022516 121022882 -55951258 + THE1B LTR MaLR 1 364 0 11074 239 21 23 chrX 121022882 121025050 -55949090 + L1PA16 LINE L1 5429 7595 -9 361 295 0 0 chrX 121025515 121025627 -55948513 - MER117 DNA MER1_type -54 143 32 986 214 30 92 chrX 121026462 121026625 -55947515 - MLT1B LTR MaLR 0 396 225 2201 98 27 0 chrX 121026625 121026920 -55947220 + AluSg SINE Alu 1 303 -7 986 214 30 92 chrX 121026920 121027168 -55946972 - MLT1B LTR MaLR -171 225 4 345 24 0 0 chrX 121027262 121027304 -55946836 + (CA)n Simple_repeat Simple_repeat 2 43 0 384 60 254 0 chrX 121027685 121027752 -55946388 + MLT2A1 LTR ERVL 1 84 -360 35678 99 15 10 chrX 121027752 121030479 -55943661 + HERVL-A2 LTR ERVL 391 3161 -2493 2990 92 18 18 chrX 121030479 121030923 -55943217 - MLT2A1 LTR ERVL 0 444 1 35678 99 15 10 chrX 121030923 121033431 -55940709 + HERVL-A2 LTR ERVL 3161 5654 0 2265 83 71 71 chrX 121033431 121033842 -55940298 + MLT2A2 LTR ERVL 1 411 -42 209 125 25 0 chrX 121033844 121033884 -55940256 + (TA)n Simple_repeat Simple_repeat 1 41 0 352 89 0 18 chrX 121033884 121033940 -55940200 + MLT2A2 LTR ERVL 390 444 0 183 156 0 0 chrX 121033953 121033985 -55940155 + (TTG)n Simple_repeat Simple_repeat 2 33 0 763 32 0 0 chrX 121036320 121036413 -55937727 + L1PA3 LINE L1 6060 6152 -3 423 0 0 0 chrX 121036757 121036804 -55937336 + (CA)n Simple_repeat Simple_repeat 2 48 0 22 35 0 0 chrX 121036994 121037023 -55937117 + AT_rich Low_complexity Low_complexity 1 29 0 1690 152 49 0 chrX 121037023 121037351 -55936789 - L1MA8 LINE L1 -6 6285 5942 2798 140 22 45 chrX 121038043 121038594 -55935546 - Tigger1 DNA MER2_type 0 2418 1881 4247 157 14 15 chrX 121038600 121039385 -55934755 - L1PA15 LINE L1 0 6165 5382 504 289 44 6 chrX 121039557 121039716 -55934424 + L2 LINE L2 3149 3313 0 459 288 29 12 chrX 121041524 121041694 -55932446 + L2 LINE L2 3141 3313 0 24 67 0 0 chrX 121042724 121042769 -55931371 + AT_rich Low_complexity Low_complexity 1 45 0 252 0 0 0 chrX 121043063 121043091 -55931049 + (GA)n Simple_repeat Simple_repeat 1 28 0 4894 196 15 8 chrX 121044082 121044745 -55929395 - L1PA16 LINE L1 0 6166 5509 2346 102 0 3 chrX 121044745 121045050 -55929090 - AluSg SINE Alu -6 304 1 4894 196 15 8 chrX 121045050 121046441 -55927699 - L1PA16 LINE L1 -657 5509 4097 4774 205 28 4 chrX 121046436 121047398 -55926742 - MST-int LTR MaLR -131 1520 536 * 1703 202 37 29 chrX 121047398 121047944 -55926196 - MLT2A2 LTR ERVL 0 554 6 2096 199 0 5 chrX 121047952 121048379 -55925761 - MST-int LTR MaLR -1110 541 117 1237 119 46 14 chrX 121048381 121048600 -55925540 - MSTA LTR MaLR -202 226 1 5637 209 23 7 chrX 121048602 121049342 -55924798 + L1 LINE L1 3129 3904 -2242 2225 118 0 0 chrX 121049342 121049639 -55924501 + AluSq SINE Alu 1 297 -16 5637 209 23 7 chrX 121049639 121050309 -55923831 + L1 LINE L1 3904 4562 -1584 328 233 12 12 chrX 121050437 121050523 -55923617 + LTR25 LTR ERV1 248 333 -461 995 157 19 11 chrX 121050715 121050932 -55923208 + LTR25 LTR ERV1 341 794 0 426 183 0 65 chrX 121050943 121051036 -55923104 + LTR25-int LTR ERV1 5 91 -6905 2523 227 10 62 chrX 121051040 121051731 -55922409 + LTR25-int LTR ERV1 259 913 -6083 9245 40 0 0 chrX 121051747 121053641 -55920499 - L1PA5 LINE L1 -3 6151 4259 8204 44 1 4 chrX 121053641 121054663 -55919477 + L1PA5 LINE L1 3236 4254 -1892 9168 201 25 24 chrX 121054663 121057630 -55916510 + LTR27-int LTR ERV1 755 4120 -2876 863 79 9 0 chrX 121057636 121057750 -55916390 + AluY SINE Alu 1 115 -196 2394 68 3 0 chrX 121057781 121058076 -55916064 + AluY SINE Alu 1 296 -15 10772 188 46 51 chrX 121058091 121061067 -55913073 + LTR27-int LTR ERV1 4063 6994 -2 472 246 16 16 chrX 121061191 121061313 -55912827 + LTR25 LTR ERV1 232 353 -441 954 210 56 5 chrX 121061488 121061702 -55912438 + MER61E LTR ERV1 341 565 -4 3527 166 5 25 chrX 121061708 121062303 -55911837 + L1P5 LINE L1 4558 5164 -987 880 65 81 0 chrX 121062303 121062427 -55911713 + MER85 DNA T2_type 2 135 -4 3527 166 5 25 chrX 121062427 121062884 -55911256 + L1P5 LINE L1 5164 5583 -568 8263 52 1 0 chrX 121062884 121063849 -55910291 - LTR5 LTR ERVK -3 966 1 3527 166 5 25 chrX 121063849 121064044 -55910096 + L1P5 LINE L1 5583 5780 -371 1926 155 45 5 chrX 121064054 121064434 -55909706 + L1MA7 LINE L1 5895 6289 -2 22 0 0 0 chrX 121064440 121064462 -55909678 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chrX 121065136 121065170 -55908970 + AT_rich Low_complexity Low_complexity 1 34 0 25 65 0 0 chrX 121065348 121065394 -55908746 + AT_rich Low_complexity Low_complexity 1 46 0 32 67 0 0 chrX 121065774 121065834 -55908306 + AT_rich Low_complexity Low_complexity 1 60 0 1090 273 34 28 chrX 121067604 121067930 -55906210 - MLT1E3 LTR MaLR 0 624 297 2503 183 18 5 chrX 121067949 121068457 -55905683 + LTR27 LTR ERV1 2 486 -15 1101 236 51 51 chrX 121068459 121068811 -55905329 - MLT1E1 LTR MaLR -302 352 1 2146 122 0 7 chrX 121069469 121069810 -55904330 + AluSx SINE Alu 1 312 0 275 335 44 70 chrX 121069812 121069970 -55904170 + L2 LINE L2 3119 3272 0 182 270 48 63 chrX 121070218 121070281 -55903859 - L2 LINE L2 -95 3177 3116 27 81 0 0 chrX 121070659 121070721 -55903419 + AT_rich Low_complexity Low_complexity 1 62 0 1576 308 28 11 chrX 121071682 121072254 -55901886 - HERV16 LTR ERVL -2796 2200 1619 * 2263 320 35 23 chrX 121072245 121073141 -55900999 - HERV16 LTR ERVL -3830 1166 261 1189 272 58 29 chrX 121073372 121073788 -55900352 - LTR16A LTR ERVL 0 450 23 548 312 60 46 chrX 121075920 121076503 -55897637 + HAL1 LINE L1 1782 2372 -135 11682 200 11 3 chrX 121076619 121078716 -55895424 + L1MA3 LINE L1 9 2122 -5443 5674 175 46 7 chrX 121128743 121130808 -55843332 + L1MA3 LINE L1 5602 7724 0 351 267 8 42 chrX 121130813 121130933 -55843207 - MER3 DNA MER1_type -86 123 8 1001 199 16 5 chrX 121132385 121132576 -55841564 + L1M4 LINE L1 5431 5623 -551 2178 118 48 28 chrX 121132579 121132936 -55841204 - THE1B LTR MaLR 0 364 1 5024 92 3 18 chrX 121132936 121133623 -55840517 - THE1B-int LTR MaLR 0 1580 904 285 123 18 18 chrX 121133618 121133675 -55840465 + THE1B-int LTR MaLR 1524 1580 0 * 2452 106 17 3 chrX 121133675 121134034 -55840106 + THE1B LTR MaLR 1 364 0 1075 154 7 14 chrX 121134034 121134298 -55839842 + L1M1 LINE L1 3477 3739 -3826 * 1225 221 14 0 chrX 121134296 121134572 -55839568 - L1 LINE L1 -3570 2576 2297 * 2495 253 56 16 chrX 121134564 121135417 -55838723 - L1ME1 LINE L1 -77 6325 5442 1140 275 65 12 chrX 121135422 121136628 -55837512 - L1ME1 LINE L1 -1873 4509 3105 282 247 12 0 chrX 121136714 121136795 -55837345 - L1ME1 LINE L1 -3215 3167 3086 1812 5 0 0 chrX 121136795 121136999 -55837141 + L1PA3 LINE L1 5950 6153 -2 38 0 0 0 chrX 121137000 121137038 -55837102 + AT_rich Low_complexity Low_complexity 1 38 0 1598 250 42 19 chrX 121137080 121137696 -55836444 - L1ME1 LINE L1 -3316 3066 2437 2579 213 9 9 chrX 121137764 121138337 -55835803 - L1MB8 LINE L1 -21 6157 5585 1190 277 108 17 chrX 121138334 121139041 -55835099 - L1ME1 LINE L1 -3995 2387 1617 * 2092 187 13 8 chrX 121139046 121139198 -55834942 - MLT1B LTR MaLR -3 387 237 1999 182 69 17 chrX 121139198 121139605 -55834535 + MSTA LTR MaLR 1 428 0 2092 187 13 8 chrX 121139605 121139832 -55834308 - MLT1B LTR MaLR -153 237 6 287 289 44 9 chrX 121139833 121139947 -55834193 - L1ME1 LINE L1 -4896 1488 1371 5105 203 39 8 chrX 121141200 121142152 -55831988 - L1PA13 LINE L1 -5806 981 1 5791 150 20 27 chrX 121142335 121143829 -55830311 - L1PB2 LINE L1 -2 6149 4677 1008 307 57 15 chrX 121144097 121144429 -55829711 + LTR16A LTR ERVL 95 440 -10 8288 151 56 88 chrX 121144454 121146268 -55827872 - MER52A LTR ERV1 0 1755 1 24 67 0 0 chrX 121146839 121146884 -55827256 + AT_rich Low_complexity Low_complexity 1 45 0 240 35 0 0 chrX 121148643 121148672 -55825468 + (TG)n Simple_repeat Simple_repeat 1 29 0 198 0 0 0 chrX 121148671 121148693 -55825447 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 21 36 0 0 chrX 121149069 121149097 -55825043 + AT_rich Low_complexity Low_complexity 1 28 0 12519 237 24 22 chrX 121149376 121155321 -55818819 + L1PA15 LINE L1 1 6488 -329 237 143 41 0 chrX 121155320 121155369 -55818771 + L1PA13 LINE L1 5367 5417 -744 * 291 87 43 0 chrX 121155385 121155431 -55818709 - L1PA13 LINE L1 -21 6142 6095 * 687 168 19 6 chrX 121155426 121155587 -55818553 - L1 LINE L1 -808 5338 5176 4614 129 8 7 chrX 121155596 121156340 -55817800 + L1PA13 LINE L1 5419 6163 0 1781 186 0 22 chrX 121156340 121156429 -55817711 + L1PA15 LINE L1 6465 6554 -262 2522 116 8 3 chrX 121156429 121156791 -55817349 + THE1B LTR MaLR 1 364 0 1781 186 0 22 chrX 121156791 121157051 -55817089 + L1PA15 LINE L1 6554 6816 0 1483 149 0 0 chrX 121158184 121158399 -55815741 - AluSx SINE Alu -97 215 1 2284 81 0 14 chrX 121159619 121159914 -55814226 - AluSc SINE Alu -18 291 1 670 200 35 12 chrX 121161424 121161594 -55812546 - MER92B LTR ERV1 -10 626 453 2024 137 14 21 chrX 121161703 121162141 -55811999 - LTR23 LTR ERV1 0 467 1 9289 1 0 6 chrX 121162141 121163561 -55810579 - LTR23-int LTR ERV1 0 5123 3574 1870 126 11 3 chrX 121163561 121163847 -55810293 + L1PA11 LINE L1 5886 6173 -1 9289 1 0 6 chrX 121163847 121164101 -55810039 - LTR23-int LTR ERV1 -1549 3574 3320 622 139 10 0 chrX 121164101 121164202 -55809938 - THE1B LTR MaLR 0 364 263 4133 110 103 106 chrX 121164202 121165588 -55808552 + pTR5 LTR ERV1 743 2438 0 1721 125 8 0 chrX 121165591 121165855 -55808285 - THE1B LTR MaLR -98 266 1 9867 0 0 7 chrX 121165855 121166246 -55807894 - LTR23-int LTR ERV1 -1804 3319 2927 5116 78 1 1 chrX 121166246 121166913 -55807227 - PABL_B LTR ERV1 0 667 1 9867 0 0 7 chrX 121166913 121167743 -55806397 - LTR23-int LTR ERV1 -2196 2927 2106 586 153 0 0 chrX 121167743 121167841 -55806299 + MER4A LTR ERV1 1 98 -566 1606 127 41 22 chrX 121167841 121168180 -55805960 + MER4A LTR ERV1 261 664 0 5564 0 0 0 chrX 121168180 121168869 -55805271 - LTR23-int LTR ERV1 -3018 2105 1417 1870 123 13 67 chrX 121168869 121169242 -55804898 + MER4A LTR ERV1 1 353 -311 547 95 259 17 chrX 121169313 121169429 -55804711 + MER4C LTR ERV1 302 445 -20 1679 0 0 0 chrX 121169429 121169621 -55804519 - LTR23-int LTR ERV1 -3707 1416 1225 241 305 76 15 chrX 121169621 121169752 -55804388 - MER34C LTR ERV1 -155 430 292 310 0 0 0 chrX 121169752 121169789 -55804351 - LTR23-int LTR ERV1 -4030 1093 1057 363 156 0 0 chrX 121169789 121169853 -55804287 - MER34C LTR ERV1 -362 223 160 2128 0 0 0 chrX 121169853 121170095 -55804045 - LTR23-int LTR ERV1 -4131 992 751 2573 120 152 82 chrX 121170099 121170683 -55803457 + MER4A LTR ERV1 1 625 -39 4525 99 12 9 chrX 121170697 121171372 -55802768 - L1PB1 LINE L1 -3 7567 6891 3381 210 13 29 chrX 121171377 121172286 -55801854 - L1PB1 LINE L1 -1116 6449 5555 * 7825 201 16 9 chrX 121172282 121173881 -55800259 - L1PB1 LINE L1 -5942 1623 14 3995 5 2 0 chrX 121173881 121174485 -55799655 - LTR23-int LTR ERV1 -4379 744 1 2179 119 31 16 chrX 121174485 121174911 -55799229 - LTR23 LTR ERV1 0 467 3 1027 219 67 86 chrX 121174915 121175348 -55798792 + MLT2C2 LTR ERVL 30 454 -10 1195 253 28 25 chrX 121175354 121175718 -55798422 - MER92B LTR ERV1 -269 367 3 26 64 0 0 chrX 121175798 121175845 -55798295 + AT_rich Low_complexity Low_complexity 1 47 0 950 188 79 79 chrX 121176371 121176701 -55797439 + L1MB7 LINE L1 5840 6169 -15 505 207 84 133 chrX 121176745 121177054 -55797086 + L1M2 LINE L1 1166 1459 -5571 2529 173 27 13 chrX 121177054 121177871 -55796269 + L1M2 LINE L1 5748 6579 -672 1946 149 55 19 chrX 121177871 121178233 -55795907 + THE1C LTR MaLR 1 375 0 8046 150 47 12 chrX 121178233 121178364 -55795776 + THE1C-int LTR MaLR 1 126 -1454 5074 153 51 34 chrX 121178364 121179417 -55794723 - MER11C LTR ERVK 0 1071 1 8046 150 47 12 chrX 121179417 121180702 -55793438 + THE1C-int LTR MaLR 126 1466 -114 419 320 68 50 chrX 121180733 121180955 -55793185 - MIR SINE MIR -35 227 2 512 269 80 36 chrX 121181615 121181864 -55792276 + MIR SINE MIR 3 262 0 224 370 119 14 chrX 121182139 121182358 -55791782 - L2 LINE L2 -874 2440 2199 183 313 21 0 chrX 121183315 121183363 -55790777 + MIR3 SINE MIR 138 186 -22 301 358 127 14 chrX 121184225 121184446 -55789694 + MIR SINE MIR 17 262 0 628 330 77 69 chrX 121184451 121184718 -55789422 - L2 LINE L2 -2 3311 3048 1493 238 31 3 chrX 121184718 121185071 -55789069 - MLT1A1 LTR MaLR 0 365 3 628 330 77 69 chrX 121185071 121185397 -55788743 - L2 LINE L2 -265 3048 2692 387 305 16 23 chrX 121185496 121185624 -55788516 + MIR SINE MIR 63 189 -73 14085 213 26 9 chrX 121185650 121191067 -55783073 - L1PA15 LINE L1 -7 6809 1294 2905 288 24 39 chrX 121191115 121192162 -55781978 - L1PA15 LINE L1 -5752 1035 5 503 255 28 21 chrX 121192167 121192308 -55781832 - L2 LINE L2 -4 3309 3168 864 207 8 29 chrX 121192312 121192558 -55781582 + L1PB4 LINE L1 3192 3432 -2714 2443 115 19 5 chrX 121192558 121192931 -55781209 + MLT2A1 LTR ERVL 1 378 -66 231 114 0 0 chrX 121192931 121192975 -55781165 + (TA)n Simple_repeat Simple_repeat 1 44 0 1750 80 0 0 chrX 121192976 121193213 -55780927 + HERVL LTR ERVL 1889 2125 -3529 531 56 0 0 chrX 121193214 121193285 -55780855 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 379 74 0 0 chrX 121193288 121193342 -55780798 + MLT2A1 LTR ERVL 400 453 0 2985 189 26 37 chrX 121193342 121193836 -55780304 + L1PB4 LINE L1 3428 3913 -2233 1778 154 10 14 chrX 121193836 121194128 -55780012 + AluSx SINE Alu 1 291 -21 2985 189 26 37 chrX 121194128 121194389 -55779751 + L1PB4 LINE L1 3913 4175 -1971 2716 111 52 7 chrX 121194393 121194817 -55779323 + MLT2A1 LTR ERVL 2 444 0 3507 80 6 0 chrX 121194817 121195302 -55778838 + HERVL-A1 LTR ERVL 1 488 -5166 26191 91 5 12 chrX 121195304 121199047 -55775093 + HERVL-A1 LTR ERVL 876 4590 -1064 250 179 149 0 chrX 121199047 121199114 -55775026 + L1PB4 LINE L1 4183 4259 -1887 924 206 25 0 chrX 121249126 121249325 -55724815 + L1PB4 LINE L1 5761 5964 -192 * 4875 147 25 13 chrX 121249313 121250378 -55723762 + L1PA15 LINE L1 5067 6144 -21 352 331 33 46 chrX 121250480 121250631 -55723509 + MIR SINE MIR 7 155 -107 216 122 20 61 chrX 121250676 121250725 -55723415 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 536 271 79 17 chrX 121250727 121250904 -55723236 - MIR SINE MIR -58 204 17 365 318 83 40 chrX 121251005 121251307 -55722833 - MLT1K LTR MaLR 0 588 274 21 0 0 0 chrX 121251525 121251546 -55722594 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 121251689 121251717 -55722423 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 336 24 0 0 chrX 121251716 121251757 -55722383 + (GA)n Simple_repeat Simple_repeat 2 42 0 489 246 0 70 chrX 121251758 121251872 -55722268 - FLAM_A SINE Alu -36 106 1 300 241 0 0 chrX 121251875 121251954 -55722186 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 2414 71 3 0 chrX 121252255 121252563 -55721577 - AluY SINE Alu -2 309 1 1861 184 31 30 chrX 121253005 121253562 -55720578 + MLT2A2 LTR ERVL 1 554 0 33136 119 10 3 chrX 121253562 121258609 -55715531 + HERVL-A2 LTR ERVL 1 5080 -574 1881 138 17 0 chrX 121258613 121258911 -55715229 - THE1B LTR MaLR -61 303 1 23 0 0 0 chrX 121259079 121259102 -55715038 + AT_rich Low_complexity Low_complexity 1 23 0 653 295 28 31 chrX 121259746 121260000 -55714140 + MIR SINE MIR 10 262 0 12462 222 33 34 chrX 121260250 121265664 -55708476 - L1PB3 LINE L1 -2 6868 2411 309 51 0 0 chrX 121265664 121265703 -55708437 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 12462 222 33 34 chrX 121265703 121267998 -55706142 - L1PB3 LINE L1 -4459 2411 115 21 0 0 0 chrX 121268534 121268555 -55705585 + AT_rich Low_complexity Low_complexity 1 21 0 2397 68 0 3 chrX 121269722 121270017 -55704123 - AluY SINE Alu -17 294 1 227 253 13 0 chrX 121270448 121270527 -55703613 + (TA)n Simple_repeat Simple_repeat 1 80 0 1055 228 56 43 chrX 121270568 121271221 -55702919 + L1MC/D LINE L1 5029 5696 -663 183 321 170 25 chrX 121271343 121271502 -55702638 - MIR SINE MIR -1 261 80 982 183 14 0 chrX 121271994 121272207 -55701933 + L1 LINE L1 3275 3490 -2656 12532 217 18 24 chrX 121272215 121277479 -55696661 + L1PB4 LINE L1 1 5238 -1559 251 152 0 0 chrX 121277509 121277555 -55696585 + L1PA16 LINE L1 6096 6141 -25 2201 99 0 10 chrX 121277560 121277863 -55696277 - AluSx SINE Alu -12 300 1 2377 222 42 49 chrX 121277889 121279396 -55694744 + L1M4c LINE L1 1984 3473 -2909 535 183 0 46 chrX 121279395 121279526 -55694614 - L1MA3 LINE L1 -334 5969 5845 * 894 151 0 16 chrX 121279542 121279727 -55694413 + L1MA3 LINE L1 5971 6152 -153 40990 33 23 0 chrX 121279746 121285759 -55688381 + L1PA3 LINE L1 1 6155 0 35 24 0 0 chrX 121285759 121285801 -55688339 + AT_rich Low_complexity Low_complexity 1 42 0 1032 98 0 0 chrX 121286484 121287037 -55687103 + (TA)n Simple_repeat Simple_repeat 1 553 0 222 307 127 33 chrX 121287039 121287189 -55686951 - MER5A DNA MER1_type -25 164 1 449 351 96 23 chrX 121287536 121287838 -55686302 + LTR16A LTR ERVL 127 450 0 416 266 0 14 chrX 121288242 121288385 -55685755 + L1PB4 LINE L1 5264 5404 -1393 559 137 0 0 chrX 121288389 121288491 -55685649 + L1M3 LINE L1 5598 5699 -635 3026 193 41 15 chrX 121288492 121289464 -55684676 + L1PB4 LINE L1 5403 6348 -459 1720 189 139 13 chrX 121289464 121289844 -55684296 + MSTA LTR MaLR 1 428 0 8950 142 14 39 chrX 121289846 121291465 -55682675 + MSTA-int LTR MaLR 3 1580 0 2052 140 140 11 chrX 121291465 121291844 -55682296 + MSTA LTR MaLR 1 428 0 3026 193 41 15 chrX 121291844 121292059 -55682081 + L1PB4 LINE L1 6347 6615 -192 * 4875 147 25 13 chrX 121292047 121293112 -55681028 + L1PA15 LINE L1 5067 6144 -21 352 331 33 46 chrX 121293214 121293365 -55680775 + MIR SINE MIR 7 155 -107 216 122 20 61 chrX 121293410 121293459 -55680681 + (CATATA)n Simple_repeat Simple_repeat 5 51 0 536 271 79 17 chrX 121293461 121293638 -55680502 - MIR SINE MIR -58 204 17 365 318 83 40 chrX 121293739 121294041 -55680099 - MLT1K LTR MaLR 0 588 274 21 0 0 0 chrX 121294259 121294280 -55679860 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 121294423 121294451 -55679689 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 336 24 0 0 chrX 121294450 121294491 -55679649 + (GA)n Simple_repeat Simple_repeat 2 42 0 489 246 0 70 chrX 121294492 121294606 -55679534 - FLAM_A SINE Alu -36 106 1 300 241 0 0 chrX 121294609 121294688 -55679452 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 2414 71 3 0 chrX 121294989 121295297 -55678843 - AluY SINE Alu -2 309 1 1861 184 31 30 chrX 121295739 121296296 -55677844 + MLT2A2 LTR ERVL 1 554 0 24949 117 12 4 chrX 121296296 121301343 -55672797 + HERVL-A2 LTR ERVL 1 5080 -574 1881 138 17 0 chrX 121301347 121301645 -55672495 - THE1B LTR MaLR -61 303 1 23 0 0 0 chrX 121301813 121301836 -55672304 + AT_rich Low_complexity Low_complexity 1 23 0 653 295 28 31 chrX 121302480 121302734 -55671406 + MIR SINE MIR 10 262 0 7996 197 7 6 chrX 121302983 121305798 -55668342 - L1PB3 LINE L1 -2 6152 3336 2456 39 0 10 chrX 121405876 121406185 -55567955 + L1PA4 LINE L1 5849 6154 -1 708 244 28 6 chrX 121406375 121406555 -55567585 - L1MC4 LINE L1 -1127 6915 6732 483 212 0 0 chrX 121406580 121406698 -55567442 - L1MA7 LINE L1 -10 6281 6164 3344 171 26 2 chrX 121406704 121407351 -55566789 - L1MA7 LINE L1 -399 5892 5231 2504 75 0 0 chrX 121408472 121408779 -55565361 + AluY SINE Alu 1 307 -4 1012 244 60 52 chrX 121408882 121409481 -55564659 + L1MEc LINE L1 2036 2618 -3597 434 229 0 30 chrX 121409539 121409670 -55564470 + L1MDa LINE L1 1284 1410 -5130 6727 174 43 20 chrX 121409671 121410865 -55563275 + L1M1 LINE L1 2295 3460 -4105 789 90 0 0 chrX 121410865 121410976 -55563164 + (GGAA)n Simple_repeat Simple_repeat 4 114 0 6727 174 43 20 chrX 121410976 121412150 -55561990 + L1M1 LINE L1 3460 4721 -2844 2630 270 33 44 chrX 121412142 121412989 -55561151 + L1PA15 LINE L1 1 838 -6743 * 2056 153 11 37 chrX 121412995 121413347 -55560793 - MER61A LTR ERV1 0 343 1 26709 83 32 20 chrX 121413347 121416611 -55557529 - MER61A-int LTR ERV1 0 5217 1897 2269 114 0 3 chrX 121416611 121416919 -55557221 + AluSx SINE Alu 1 307 -5 26709 83 32 20 chrX 121416919 121417505 -55556635 - MER61A-int LTR ERV1 -3320 1897 1320 4596 127 14 3 chrX 121417501 121417772 -55556368 - MER61A-int LTR ERV1 -4443 774 507 * 183 42 0 0 chrX 121417772 121417796 -55556344 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4596 127 14 3 chrX 121417796 121418258 -55555882 - MER61A-int LTR ERV1 -4710 507 2 1847 152 42 21 chrX 121418258 121418594 -55555546 - MER61A LTR ERV1 0 343 1 346 320 87 24 chrX 121418638 121419072 -55555068 + L1PA15 LINE L1 1545 2080 -5501 15152 229 17 8 chrX 121419080 121422795 -55551345 + L1PA15 LINE L1 2935 6681 -903 2174 148 122 8 chrX 121422795 121423179 -55550961 - MSTA LTR MaLR 0 428 1 8388 174 14 41 chrX 121423179 121424799 -55549341 - MSTA-int LTR MaLR 0 1580 5 2025 154 125 8 chrX 121424803 121425186 -55548954 - MSTA LTR MaLR 0 428 1 5059 155 18 12 chrX 121425187 121426121 -55548019 + L1PA15 LINE L1 6678 7597 -6 2194 232 23 2 chrX 121426125 121426656 -55547484 + L1M1 LINE L1 4712 5253 -2312 321 89 22 0 chrX 121426659 121426704 -55547436 + THE1C LTR MaLR 330 375 0 15206 228 17 8 chrX 121426704 121430418 -55543722 - L1P LINE L1 -903 5243 1497 336 320 84 21 chrX 121430426 121430860 -55543280 - L1PA12 LINE L1 -5501 2080 1545 1847 154 39 21 chrX 121430904 121431241 -55542899 + MER61A LTR ERV1 1 343 0 4556 129 14 3 chrX 121431241 121431703 -55542437 + MER61A-int LTR ERV1 2 507 -4710 216 0 0 0 chrX 121431703 121431727 -55542413 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4556 129 14 3 chrX 121431727 121431998 -55542142 + MER61A-int LTR ERV1 507 774 -4443 * 26781 83 32 20 chrX 121431994 121432580 -55541560 + MER61A-int LTR ERV1 1320 1898 -3319 2269 114 0 3 chrX 121432580 121432888 -55541252 - AluSx SINE Alu -5 307 1 26781 83 32 20 chrX 121432888 121436154 -55537986 + MER61A-int LTR ERV1 1898 5217 0 2056 153 11 37 chrX 121436154 121436506 -55537634 + MER61A LTR ERV1 1 343 0 2642 273 33 43 chrX 121436512 121437358 -55536782 - L1PA12 LINE L1 -6743 838 1 * 6677 175 43 18 chrX 121437350 121438524 -55535616 - L1 LINE L1 -2844 4721 3578 723 81 0 0 chrX 121438524 121438623 -55535517 + (TTCC)n Simple_repeat Simple_repeat 4 102 0 6677 175 43 18 chrX 121438623 121439813 -55534327 - L1 LINE L1 -3987 3578 2295 434 229 0 30 chrX 121439814 121439945 -55534195 - L1MDa LINE L1 -5130 1410 1284 1027 241 61 52 chrX 121440003 121440602 -55533538 - L1MEc LINE L1 -3597 2618 2036 2517 75 0 0 chrX 121440705 121441012 -55533128 - AluY SINE Alu -4 307 1 403 321 162 42 chrX 121441607 121442133 -55532007 + L1MC4a LINE L1 6072 6660 -1148 3328 172 26 2 chrX 121442133 121442780 -55531360 + L1MA7 LINE L1 5231 5892 -399 507 203 0 0 chrX 121442786 121442904 -55531236 + L1MA7 LINE L1 6164 6281 -10 708 244 28 6 chrX 121442929 121443109 -55531031 + L1MC4 LINE L1 6732 6915 -1127 2424 45 0 10 chrX 121443299 121443608 -55530532 - L1PA4 LINE L1 -1 6154 5849 2236 202 62 9 chrX 121444201 121444640 -55529500 - L1MB7 LINE L1 -8 6176 5701 2323 70 3 3 chrX 121444640 121444925 -55529215 - AluSc SINE Alu -17 292 8 2236 202 62 9 chrX 121444925 121445034 -55529106 - L1MB7 LINE L1 -483 5701 5599 2683 129 21 3 chrX 121445047 121445519 -55528621 - L1P4 LINE L1 -467 5699 5221 324 208 85 39 chrX 121446528 121446658 -55527482 - HAL1 LINE L1 -107 2400 2265 264 217 38 76 chrX 121446820 121446977 -55527163 - HAL1b LINE L1 -471 877 727 3398 224 18 2 chrX 121447101 121448330 -55525810 - L1PA16 LINE L1 0 6166 4781 279 0 0 0 chrX 121448330 121448361 -55525779 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 3398 224 18 2 chrX 121448361 121448384 -55525756 - L1PA16 LINE L1 -1385 4781 4760 2311 239 23 22 chrX 121448388 121448505 -55525635 - L1 LINE L1 -1578 4568 4453 7625 92 6 14 chrX 121448505 121449585 -55524555 + MER11C LTR ERVK 1 1071 0 2311 239 23 22 chrX 121449585 121450152 -55523988 - L1 LINE L1 -1693 4453 3883 1072 100 0 0 chrX 121450163 121450313 -55523827 - L1MA2 LINE L1 -3 6301 6152 1107 116 0 0 chrX 121450318 121450488 -55523652 - AluSc SINE Alu 0 302 133 248 98 0 0 chrX 121450499 121450540 -55523600 - L1MA2 LINE L1 -164 6140 6100 * 3825 155 10 8 chrX 121450534 121451647 -55522493 + L1M1 LINE L1 4570 5687 -617 446 186 24 48 chrX 121451644 121451768 -55522372 - L1PA16 LINE L1 -2589 3557 3437 * 1009 143 6 0 chrX 121451779 121451947 -55522193 + HERVL-A2 LTR ERVL 5486 5654 0 2084 185 26 32 chrX 121451947 121452509 -55521631 + MLT2A2 LTR ERVL 1 554 0 6117 121 35 11 chrX 121452509 121454552 -55519588 - L1PBa LINE L1 -4626 2237 3 2896 194 104 23 chrX 121454561 121454843 -55519297 - L1MC4 LINE L1 -210 6134 6770 189 0 0 0 chrX 121454843 121454864 -55519276 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2896 194 104 23 chrX 121454864 121455667 -55518473 - L1MC4 LINE L1 427 6771 6034 2329 140 0 3 chrX 121456251 121456622 -55517518 - L1PB1 LINE L1 0 6867 6498 551 43 106 5 chrX 121456630 121456845 -55517295 + (TA)n Simple_repeat Simple_repeat 1 236 0 14305 193 40 13 chrX 121456856 121463013 -55511127 - L1PB1 LINE L1 -360 6507 6 628 158 0 0 chrX 121463155 121463250 -55510890 + AluJ/FLAM SINE Alu 1 95 -217 19241 176 29 10 chrX 121464830 121467955 -55506185 + L1MA1 LINE L1 12 3076 -4645 1981 126 0 7 chrX 121467955 121468268 -55505872 + AluSx SINE Alu 1 311 0 19241 176 29 10 chrX 121468268 121472700 -55501440 + L1MA1 LINE L1 3076 7714 -7 2797 193 9 3 chrX 121473297 121473872 -55500268 + L1MB2 LINE L1 5587 6164 -7 772 254 33 14 chrX 121474815 121475111 -55499029 - MER90 LTR ERV1 0 614 279 531 320 125 31 chrX 121475355 121475669 -55498471 - L2 LINE L2 -771 2543 2260 1221 242 70 36 chrX 121475669 121476115 -55498025 + MLT2C2 LTR ERVL 4 464 0 531 320 125 31 chrX 121476115 121476378 -55497762 - L2 LINE L2 -1054 2260 1912 320 322 64 41 chrX 121476488 121476659 -55497481 - MIR SINE MIR -51 211 37 906 284 0 0 chrX 121476952 121477170 -55496970 - MIR SINE MIR 0 262 45 21 57 0 0 chrX 121480219 121480254 -55493886 + AT_rich Low_complexity Low_complexity 1 35 0 195 298 60 12 chrX 121480258 121480342 -55493798 + MER5A DNA MER1_type 4 91 -98 1949 294 65 50 chrX 121480393 121481244 -55492896 - L3 LINE CR1 -42 1535 667 180 0 0 0 chrX 121481244 121481264 -55492876 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1949 294 65 50 chrX 121481264 121481373 -55492767 - L3 LINE CR1 -910 667 561 3655 222 44 24 chrX 121481491 121483420 -55490720 - L1MB7 LINE L1 -10 6174 4018 33755 30 1 0 chrX 121483464 121488286 -55485854 + L1PA3 LINE L1 1327 6151 -4 3484 254 14 4 chrX 121488300 121489404 -55484736 - L1MB7 LINE L1 -2695 3451 2337 440 221 23 0 chrX 121489405 121489490 -55484650 - MER44D DNA MER2_type 0 605 519 744 286 0 16 chrX 121489490 121489672 -55484468 + MER8 DNA MER2_type 1 179 -60 281 250 17 0 chrX 121489650 121489710 -55484430 + MER2 DNA MER2_type 285 345 0 * 1365 146 0 0 chrX 121489713 121489933 -55484207 - MER44D DNA MER2_type -90 515 241 9746 84 7 2 chrX 121490010 121491278 -55482862 + HSMAR1 DNA Mariner 14 1287 0 1364 226 8 0 chrX 121491278 121491521 -55482619 - MER44D DNA MER2_type -460 245 1 310 269 0 0 chrX 121491523 121491616 -55482524 - L1MB7 LINE L1 -3811 2335 2243 883 130 25 19 chrX 121491619 121491780 -55482360 - L1MA6 LINE L1 -402 5898 5737 524 281 44 35 chrX 121491781 121492241 -55481899 - L1M4c LINE L1 -3916 2301 1877 567 293 12 6 chrX 121492553 121492717 -55481423 - MLT1A1 LTR MaLR -2 363 199 15017 161 10 11 chrX 121492778 121495251 -55478889 + L1M1 LINE L1 15 2484 -5081 625 223 226 39 chrX 121695271 121695603 -55278537 - L1MC4 LINE L1 -49 7993 7600 317 309 18 45 chrX 121695603 121695713 -55278427 - MIR3 SINE MIR -47 161 55 226 217 0 0 chrX 121695776 121695822 -55278318 + (TG)n Simple_repeat Simple_repeat 1 46 0 1920 117 6 59 chrX 121697275 121697599 -55276541 + L1M2 LINE L1 5463 5769 -543 497 279 62 41 chrX 121698390 121698759 -55275381 - L1ME4a LINE L1 -207 5914 5538 1420 253 43 29 chrX 121699059 121699434 -55274706 - MSTD LTR MaLR -2 394 15 21 36 0 0 chrX 121699837 121699865 -55274275 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chrX 121700597 121700633 -55273507 + AT_rich Low_complexity Low_complexity 1 36 0 255 204 0 0 chrX 121701098 121701152 -55272988 + (CATA)n Simple_repeat Simple_repeat 2 55 0 487 269 38 25 chrX 121701663 121701733 -55272407 + MIR SINE MIR 88 156 -106 2284 159 140 71 chrX 121701733 121702377 -55271763 - LTR1 LTR ERV1 0 785 82 1955 90 3 27 chrX 121702377 121702676 -55271464 - AluY SINE Alu 0 311 20 2284 159 140 71 chrX 121702676 121702765 -55271375 - LTR1 LTR ERV1 -703 82 1 487 269 38 25 chrX 121702765 121702854 -55271286 + MIR SINE MIR 156 249 -13 555 238 17 147 chrX 121702984 121703283 -55270857 - L2 LINE L2 0 3313 3054 644 329 120 25 chrX 121703303 121703710 -55270430 - L2 LINE L2 -1 3312 2867 702 327 203 32 chrX 121703754 121704246 -55269894 - L2 LINE L2 -562 2752 2177 225 0 0 0 chrX 121705155 121705180 -55268960 + (GA)n Simple_repeat Simple_repeat 2 26 0 423 57 0 0 chrX 121706487 121706540 -55267600 + MADE1 DNA Mariner 1 53 -27 260 109 0 22 chrX 121706629 121706675 -55267465 + MADE1 DNA Mariner 35 79 -1 2377 155 35 16 chrX 121706839 121707265 -55266875 - Tigger2a DNA MER2_type 0 434 1 198 350 58 0 chrX 121708268 121708388 -55265752 - MIR SINE MIR -15 247 121 1000 171 30 34 chrX 121708388 121708651 -55265489 - MER33 DNA MER1_type -62 262 1 245 295 33 57 chrX 121708651 121708773 -55265367 + L2 LINE L2 3189 3307 -6 3491 149 4 0 chrX 121709363 121709915 -55264225 - L1PB4 LINE L1 -97 6059 5506 2245 107 0 3 chrX 121711356 121711665 -55262475 - AluSc SINE Alu -1 308 1 406 119 134 0 chrX 121712935 121713036 -55261104 + L1PA10 LINE L1 6072 6181 0 204 40 0 0 chrX 121713130 121713155 -55260985 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 234 0 0 0 chrX 121713154 121713180 -55260960 + (TG)n Simple_repeat Simple_repeat 1 26 0 235 175 16 16 chrX 121713345 121713408 -55260732 + (TA)n Simple_repeat Simple_repeat 2 64 0 549 300 105 5 chrX 121713512 121713702 -55260438 - L2 LINE L2 -281 3032 2824 513 319 35 39 chrX 121714689 121714974 -55259166 + L2 LINE L2 3028 3311 -2 386 289 29 10 chrX 121715181 121715285 -55258855 - MER5B DNA MER1_type -1 177 72 454 275 124 41 chrX 121715341 121715559 -55258581 + MIR SINE MIR 18 253 -9 2965 159 48 2 chrX 121715773 121716277 -55257863 + MER1A DNA MER1_type 1 527 0 952 219 92 41 chrX 121716690 121717059 -55257081 - L1MB8 LINE L1 -13 7584 7197 442 270 7 22 chrX 121717059 121717196 -55256944 - MLT1C LTR MaLR 0 467 333 6100 179 27 10 chrX 121717225 121718315 -55255825 - L1M1 LINE L1 -5139 2426 1319 * 9575 203 23 39 chrX 121718313 121718737 -55255403 - L1MB8 LINE L1 -1524 6041 5612 2155 109 0 0 chrX 121718737 121719022 -55255118 + AluSg SINE Alu 1 285 -25 9575 203 23 39 chrX 121719022 121721346 -55252794 - L1MB8 LINE L1 -1953 5612 3345 7921 207 30 9 chrX 121721340 121721388 -55252752 - L1MB8 LINE L1 -4142 3423 3377 * 440 70 0 0 chrX 121721388 121721445 -55252695 - L1PA6 LINE L1 -7 6147 6091 7921 207 30 9 chrX 121721445 121724539 -55249601 - L1MB8 LINE L1 -4188 3377 92 2186 246 31 44 chrX 121724589 121725536 -55248604 - L1M4c LINE L1 -4819 2140 1183 410 301 57 26 chrX 121725598 121725791 -55248349 - L1M4c LINE L1 -5662 1193 995 2297 88 0 3 chrX 121725825 121726132 -55248008 + AluSg SINE Alu 1 306 -4 320 277 103 27 chrX 121726296 121726454 -55247686 - L1M4c LINE L1 -6319 536 392 1775 65 153 0 chrX 121726454 121726715 -55247425 - AluY SINE Alu 0 301 1 320 277 103 27 chrX 121726715 121726765 -55247375 - L1M4c LINE L1 -6463 392 8 21 0 0 0 chrX 121727562 121727583 -55246557 + AT_rich Low_complexity Low_complexity 1 21 0 392 156 0 13 chrX 121728063 121728140 -55246000 + CT-rich Low_complexity Low_complexity 3 78 0 210 37 0 0 chrX 121728146 121728173 -55245967 + (TC)n Simple_repeat Simple_repeat 2 28 0 523 234 271 5 chrX 121728175 121728363 -55245777 + MIR SINE MIR 3 240 -22 2480 56 0 3 chrX 121728639 121728941 -55245199 + AluY SINE Alu 1 301 -10 218 329 57 0 chrX 121729054 121729124 -55245016 + L2 LINE L2 3240 3313 0 2056 129 7 13 chrX 121732899 121733209 -55240931 + AluSx SINE Alu 1 308 -4 268 264 22 11 chrX 121734111 121734202 -55239938 + CT-rich Low_complexity Low_complexity 2 93 0 1404 326 81 42 chrX 121734268 121735607 -55238533 - L2 LINE L2 0 3313 1885 6100 152 17 12 chrX 121735629 121735791 -55238349 - L1MA3 LINE L1 0 6305 6145 2636 67 79 139 chrX 121735791 121736272 -55237868 + MLT2A2 LTR ERVL 2 453 0 6100 152 17 12 chrX 121736272 121737538 -55236602 - L1MA3 LINE L1 -160 6145 4866 268 304 130 25 chrX 121737617 121737778 -55236362 - MIR SINE MIR -73 189 12 311 335 143 0 chrX 121738859 121739041 -55235099 - MIR SINE MIR -2 260 53 722 344 20 12 chrX 121739302 121739555 -55234585 - MIR SINE MIR 0 262 8 957 192 104 133 chrX 121740469 121740854 -55233286 - MLT1A2 LTR MaLR 0 374 1 2984 109 0 0 chrX 121741922 121742362 -55231778 - L1P LINE L1 -1394 4752 4313 1833 81 0 31 chrX 121742362 121742620 -55231520 + L1PA8A LINE L1 5876 6128 -3 21 36 0 0 chrX 121742805 121742833 -55231307 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chrX 121742967 121742996 -55231144 + AT_rich Low_complexity Low_complexity 1 29 0 301 241 21 103 chrX 121743137 121743282 -55230858 - L1P LINE L1 -2008 4138 4006 428 327 72 27 chrX 121743468 121743691 -55230449 - MLT1L LTR MaLR -240 375 143 13494 151 26 15 chrX 121744099 121746490 -55227650 + Tigger1 DNA MER2_type 1 2418 0 365 288 29 68 chrX 121746565 121746770 -55227370 - L1M4 LINE L1 -2993 3153 2957 23438 175 18 38 chrX 121747051 121750377 -55223763 - L1PA11 LINE L1 0 6489 3419 5231 50 3 8 chrX 121750377 121751442 -55222698 - SVA Other Other -952 1384 1 23438 175 18 38 chrX 121751442 121754785 -55219355 - L1PA11 LINE L1 -3070 3419 11 708 291 42 28 chrX 121754898 121755312 -55218828 - L1ME4a LINE L1 -208 5913 5483 204 40 0 0 chrX 121755312 121755337 -55218803 + (TTA)n Simple_repeat Simple_repeat 2 26 0 708 291 42 28 chrX 121755337 121755402 -55218738 - L1ME4a LINE L1 -638 5483 5420 1817 160 3 3 chrX 121755422 121755709 -55218431 + AluSx SINE Alu 1 287 -25 30 0 0 0 chrX 121755713 121755743 -55218397 + AT_rich Low_complexity Low_complexity 1 30 0 566 298 124 51 chrX 121755775 121756308 -55217832 - L1ME4a LINE L1 -801 5345 4774 21 0 0 0 chrX 121756620 121756641 -55217499 + AT_rich Low_complexity Low_complexity 1 21 0 836 210 68 0 chrX 121756900 121757076 -55217064 + MER5A DNA MER1_type 2 189 0 350 353 0 16 chrX 121757709 121757831 -55216309 + MER5A DNA MER1_type 66 185 -4 451 242 57 16 chrX 121759131 121759255 -55214885 + MER94 DNA DNA 1 129 -5 1808 118 3 104 chrX 121759578 121759925 -55214215 + AluJo SINE Alu 1 312 0 897 231 60 4 chrX 121759958 121760226 -55213914 - MER33 DNA MER1_type -36 288 6 24 32 0 0 chrX 121762636 121762667 -55211473 + AT_rich Low_complexity Low_complexity 1 31 0 321 253 30 40 chrX 121763843 121763942 -55210198 + MER5A DNA MER1_type 17 114 -75 698 245 146 30 chrX 121764097 121764330 -55209810 + MIR SINE MIR 1 260 -2 2422 196 60 45 chrX 121764464 121765080 -55209060 - MLT1E2 LTR MaLR 0 626 2 2257 118 8 11 chrX 121765268 121765624 -55208516 - THE1A LTR MaLR 0 355 1 964 280 52 57 chrX 121766120 121766244 -55207896 + MLT1J LTR MaLR 73 196 -315 1275 207 106 69 chrX 121766244 121766620 -55207520 - MLT1B LTR MaLR 0 390 1 964 280 52 57 chrX 121766620 121766899 -55207241 + MLT1J LTR MaLR 196 474 -37 22 35 0 0 chrX 121766972 121767001 -55207139 + AT_rich Low_complexity Low_complexity 1 29 0 1900 132 20 17 chrX 121767861 121768156 -55205984 - AluSx SINE Alu -15 297 2 25 0 0 0 chrX 121768603 121768628 -55205512 + AT_rich Low_complexity Low_complexity 1 25 0 1339 241 90 68 chrX 121769236 121769814 -55204326 - MLT1E LTR MaLR 0 593 3 231 299 72 10 chrX 121770022 121770119 -55204021 - MLT1J2 LTR MaLR -284 166 64 1510 200 48 79 chrX 121770125 121770606 -55203534 + MER31B LTR ERV1 1 466 0 357 162 15 0 chrX 121770756 121770824 -55203316 - L1MB8 LINE L1 -16 6162 6094 411 339 123 22 chrX 121771063 121771290 -55202850 - MIR SINE MIR -11 251 2 1003 141 12 0 chrX 121772975 121773145 -55200995 - L1MA7 LINE L1 0 6291 6120 677 180 120 3 chrX 121773162 121773332 -55200808 + L1MA4A LINE L1 6118 6304 0 3046 171 75 42 chrX 121773621 121774304 -55199836 - MER44D DNA MER2_type 0 705 1 226 270 34 45 chrX 121775400 121775489 -55198651 - MIR SINE MIR -106 156 69 315 0 0 0 chrX 121775859 121775894 -55198246 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 214 309 60 12 chrX 121776014 121776098 -55198042 + MIR SINE MIR 20 107 -155 799 261 67 90 chrX 121776262 121776752 -55197388 + MLT1J LTR MaLR 4 482 -29 21 0 0 0 chrX 121777320 121777341 -55196799 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chrX 121777455 121777479 -55196661 + AT_rich Low_complexity Low_complexity 1 24 0 577 275 87 13 chrX 121778375 121778604 -55195536 + L2 LINE L2 2941 3186 -127 5704 121 8 28 chrX 121779335 121780888 -55193252 - L1PA16 LINE L1 -9 6157 4625 2205 178 20 12 chrX 121780895 121781469 -55192671 + L1PA15-16 LINE L1 1905 2485 -3661 333 365 106 46 chrX 121781505 121782263 -55191877 - L2 LINE L2 -614 2700 1886 4698 16 0 48 chrX 121782263 121782660 -55191480 - L1PA3 LINE L1 -3 6152 5789 5754 65 56 12 chrX 121782660 121783898 -55190242 - SVA Other Other -518 1006 3 4698 16 0 48 chrX 121783898 121784081 -55190059 - L1PA3 LINE L1 -366 5789 5599 333 365 106 46 chrX 121784081 121784162 -55189978 - L2 LINE L2 -1428 1886 1811 964 279 94 48 chrX 121784186 121784663 -55189477 - MLT1L LTR MaLR -8 607 109 385 274 17 8 chrX 121784691 121784808 -55189332 + L1ME3A LINE L1 6049 6166 -4 261 273 50 86 chrX 121784822 121784961 -55189179 - MLT1L LTR MaLR -478 137 4 313 172 50 61 chrX 121785170 121785269 -55188871 - MER20B DNA MER1_type 0 783 686 281 179 18 0 chrX 121785288 121785344 -55188796 - MER20B DNA MER1_type -206 577 521 2043 141 116 0 chrX 121785344 121785705 -55188435 - MER57A LTR ERV1 0 403 1 373 93 56 0 chrX 121785866 121785920 -55188220 + Charlie3 DNA MER1_type 2646 2702 -8 1591 234 10 22 chrX 121785921 121786323 -55187817 + L1MCb LINE L1 610 1006 -5039 434 184 9 0 chrX 121786342 121786451 -55187689 + L1MCb LINE L1 1272 1381 -5183 189 0 0 0 chrX 121786482 121786503 -55187637 + (T)n Simple_repeat Simple_repeat 1 21 0 304 220 64 39 chrX 121786503 121786632 -55187508 - LTR19C LTR ERV1 -466 146 28 1287 190 81 15 chrX 121786679 121786694 -55187446 + L1MCb LINE L1 1815 1828 -4736 1108 259 47 56 chrX 121786694 121787162 -55186978 - MLT2C2 LTR ERVL 0 464 1 1287 190 81 15 chrX 121787162 121787695 -55186445 + L1MCb LINE L1 1828 2337 -4227 3677 184 5 9 chrX 121787695 121788352 -55185788 - MER50 LTR ERV1 -23 711 58 15251 169 119 7 chrX 121788456 121793546 -55180594 - L1PBa LINE L1 -1186 5676 1 449 213 0 32 chrX 121793565 121793659 -55180481 - MIR SINE MIR -73 189 99 21 36 0 0 chrX 121794756 121794784 -55179356 + AT_rich Low_complexity Low_complexity 1 28 0 341 327 170 0 chrX 121794830 121794983 -55179157 + MIR3 SINE MIR 13 191 -17 252 0 0 0 chrX 121795017 121795045 -55179095 + (CAA)n Simple_repeat Simple_repeat 2 29 0 211 262 242 91 chrX 121795303 121795435 -55178705 + MIR SINE MIR 33 183 -79 27 62 0 0 chrX 121796333 121796381 -55177759 + AT_rich Low_complexity Low_complexity 1 48 0 225 267 12 35 chrX 121797375 121797461 -55176679 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 244 196 18 36 chrX 121798025 121798081 -55176059 - L2 LINE L2 -5 3308 3254 585 247 18 36 chrX 121798084 121798250 -55175890 - MER69A DNA AcHobo -14 163 1 401 292 247 39 chrX 121798252 121798560 -55175580 - L2 LINE L2 -60 3253 2882 401 300 14 29 chrX 121798564 121798704 -55175436 - L2 LINE L2 -494 2820 2683 1872 105 3 75 chrX 121801843 121802149 -55171991 - AluSq SINE Alu -27 286 3 2245 107 3 0 chrX 121802401 121802700 -55171440 - AluSp SINE Alu -11 302 3 2418 68 0 0 chrX 121803184 121803477 -55170663 - AluY SINE Alu -17 294 2 21 0 0 0 chrX 121803728 121803749 -55170391 + AT_rich Low_complexity Low_complexity 1 21 0 182 353 39 0 chrX 121804230 121804332 -55169808 - L2 LINE L2 -41 3272 3167 318 290 19 19 chrX 121805026 121805133 -55169007 - MIR3 SINE MIR -3 205 99 337 123 31 0 chrX 121805133 121805198 -55168942 + GA-rich Low_complexity Low_complexity 1 67 0 287 229 9 95 chrX 121805198 121805303 -55168837 - MIR SINE MIR -93 115 20 2002 116 0 4 chrX 121805591 121805868 -55168272 - AluSq SINE Alu -19 294 19 2273 85 3 0 chrX 121806790 121807101 -55167039 - AluY SINE Alu 0 312 1 341 328 57 0 chrX 121807706 121807828 -55166312 + MIR SINE MIR 19 147 -115 21 0 0 0 chrX 121808009 121808030 -55166110 + AT_rich Low_complexity Low_complexity 1 21 0 1634 244 134 59 chrX 121808656 121809424 -55164716 + LTR1B LTR ERV1 1 826 0 456 276 62 80 chrX 121810134 121810359 -55163781 - MIR SINE MIR -40 222 2 545 258 88 25 chrX 121810975 121811215 -55162925 - HAL1 LINE L1 0 2507 2253 1049 244 150 45 chrX 121811255 121811862 -55162278 - HAL1 LINE L1 -737 1770 1100 299 78 20 0 chrX 121811873 121811924 -55162216 + (ATG)n Simple_repeat Simple_repeat 3 54 0 313 289 104 0 chrX 121811950 121812085 -55162055 - HAL1 LINE L1 -1575 932 784 380 361 35 22 chrX 121812090 121812320 -55161820 - HAL1 LINE L1 -1814 693 461 2301 97 0 0 chrX 121812326 121812616 -55161524 - AluSc SINE Alu -19 290 1 251 248 16 120 chrX 121812634 121812759 -55161381 - HAL1 LINE L1 -2118 389 278 5042 81 1 5 chrX 121812833 121813502 -55160638 + PABL_B LTR ERV1 1 667 0 23 0 0 0 chrX 121814670 121814693 -55159447 + AT_rich Low_complexity Low_complexity 1 23 0 1909 128 35 17 chrX 121814698 121814986 -55159154 - AluSx SINE Alu -19 293 1 233 233 27 0 chrX 121814991 121815064 -55159076 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 652 285 101 36 chrX 121816191 121816885 -55157255 + L1ME LINE L1 3286 4024 -2122 * 2872 183 48 5 chrX 121816884 121817462 -55156678 + L1MB7 LINE L1 5557 6159 -25 360 267 127 23 chrX 121817479 121817700 -55156440 + L1ME LINE L1 4015 4258 -1888 4599 195 31 44 chrX 121817733 121818099 -55156041 + L1MC2 LINE L1 4901 5270 -1074 2105 124 7 0 chrX 121818099 121818390 -55155750 - AluSx SINE Alu -19 293 1 4599 195 31 44 chrX 121818390 121819465 -55154675 + L1MC2 LINE L1 5270 6336 -8 263 224 90 39 chrX 121819497 121819653 -55154487 + L1ME LINE L1 4279 4442 -1704 965 26 0 0 chrX 121819797 121819910 -55154230 + L1PA5 LINE L1 6035 6147 -7 25 31 0 0 chrX 121819916 121819948 -55154192 + AT_rich Low_complexity Low_complexity 1 32 0 307 254 146 30 chrX 121820070 121820235 -55153905 + L1ME LINE L1 5262 5445 -725 2047 119 31 0 chrX 121820366 121820685 -55153455 - L1PB2 LINE L1 -6 6145 5817 364 294 110 0 chrX 121820743 121820879 -55153261 + L1ME LINE L1 5500 5650 -512 255 93 0 0 chrX 121820949 121820992 -55153148 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 313 142 25 chrX 121821063 121821303 -55152837 - L2 LINE L2 -437 2877 2610 431 258 72 60 chrX 121821639 121822051 -55152089 + L1MC4a LINE L1 5548 5891 -230 316 233 79 127 chrX 121822218 121822407 -55151733 + L2 LINE L2 3134 3313 0 233 200 0 0 chrX 121822415 121822460 -55151680 + (TGAA)n Simple_repeat Simple_repeat 2 46 0 647 326 47 0 chrX 121823567 121823782 -55150358 + MIR SINE MIR 26 250 -12 238 338 0 0 chrX 121823864 121823932 -55150208 + MIR SINE MIR 33 100 -162 1185 180 34 5 chrX 121823965 121824171 -55149969 + AluJo SINE Alu 1 212 -100 1080 124 0 0 chrX 121824184 121824362 -55149778 + (TA)n Simple_repeat Simple_repeat 2 179 0 237 299 0 0 chrX 121825687 121825754 -55148386 + L2 LINE L2 3247 3313 0 2521 183 2 122 chrX 121826050 121826680 -55147460 - MLT2B3 LTR ERVL 0 554 1 2279 188 19 12 chrX 121827005 121827426 -55146714 + MSTB LTR MaLR 1 424 -2 8684 189 8 25 chrX 121827428 121829092 -55145048 + MSTB-int LTR MaLR 1 1637 -14 2373 143 50 5 chrX 121829103 121829482 -55144658 + MSTB LTR MaLR 1 396 -30 22 0 0 0 chrX 121829483 121829505 -55144635 + AT_rich Low_complexity Low_complexity 1 22 0 403 319 2 42 chrX 121829764 121829940 -55144200 + MIR SINE MIR 27 191 -68 23 33 0 0 chrX 121830644 121830674 -55143466 + AT_rich Low_complexity Low_complexity 1 30 0 608 75 0 0 chrX 121831841 121831921 -55142219 - MADE1 DNA Mariner 0 80 1 200 231 0 39 chrX 121833124 121833176 -55140964 + (CGTG)n Simple_repeat Simple_repeat 4 53 0 3606 200 9 16 chrX 121834487 121834878 -55139262 + L1 LINE L1 3331 3714 -2432 1975 163 3 0 chrX 121834878 121835179 -55138961 - AluSx SINE Alu -10 302 1 3606 200 9 16 chrX 121835179 121835577 -55138563 + L1 LINE L1 3714 4114 -2032 5566 116 2 8 chrX 121835597 121836440 -55137700 + L1MA1 LINE L1 5439 6276 -26 291 175 0 0 chrX 121836444 121836501 -55137639 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 2096 258 54 13 chrX 121836546 121837249 -55136891 + L1MC2 LINE L1 3603 4334 -1812 2614 165 33 4 chrX 121837376 121837892 -55136248 - L1MA9 LINE L1 -5 6307 5777 229 203 25 38 chrX 121837906 121837985 -55136155 + L1MC4 LINE L1 6624 6701 -1341 * 230 196 0 0 chrX 121837957 121838003 -55136137 - L1MC4 LINE L1 -1339 6703 6658 4918 190 19 51 chrX 121838005 121838404 -55135736 + L1MC2 LINE L1 4310 4720 -1624 2427 129 5 0 chrX 121838404 121838775 -55135365 + THE1C LTR MaLR 1 373 -2 9778 121 31 40 chrX 121838776 121840371 -55133769 + THE1C-int LTR MaLR 1 1580 0 2440 132 5 3 chrX 121840373 121840744 -55133396 + THE1C LTR MaLR 3 374 -1 4918 190 19 51 chrX 121840744 121842964 -55131176 + L1MC2 LINE L1 4721 6282 -62 2291 99 3 0 chrX 121842996 121843289 -55130851 - AluSp SINE Alu -19 294 1 312 179 30 0 chrX 121843291 121843358 -55130782 + L1MC2 LINE L1 6267 6335 -9 24 85 0 0 chrX 121843957 121844004 -55130136 + AT_rich Low_complexity Low_complexity 1 47 0 350 320 46 20 chrX 121845282 121845435 -55128705 - MER20B DNA MER1_type -268 515 359 916 201 0 11 chrX 121845472 121845672 -55128468 + FRAM SINE Alu 1 176 0 621 271 100 17 chrX 121845672 121845963 -55128177 - MER20B DNA MER1_type -466 317 3 1489 164 6 78 chrX 121846232 121846592 -55127548 + L1MA10 LINE L1 6000 6333 -1 421 326 7 14 chrX 121846935 121847079 -55127061 + L1MEd LINE L1 446 588 -5531 189 245 41 0 chrX 121847110 121847159 -55126981 + MER5B DNA MER1_type 2 52 -126 1271 215 131 50 chrX 121847344 121847571 -55126569 + MER66A LTR ERV1 1 208 -270 2340 91 7 0 chrX 121847571 121847880 -55126260 - AluY SINE Alu 0 311 1 1271 215 131 50 chrX 121847880 121848094 -55126046 + MER66A LTR ERV1 208 478 0 21 36 0 0 chrX 121848200 121848228 -55125912 + AT_rich Low_complexity Low_complexity 1 28 0 302 288 50 38 chrX 121848432 121848592 -55125548 + L1M4 LINE L1 40 201 -6658 1195 250 82 54 chrX 121849125 121849756 -55124384 + L1M4 LINE L1 1188 1836 -5019 1229 278 119 13 chrX 121849768 121850517 -55123623 + L1M4 LINE L1 4151 5003 -1954 921 150 50 44 chrX 121850517 121850697 -55123443 + AluJb SINE Alu 71 251 -61 715 218 88 15 chrX 121850700 121850961 -55123179 + L1M4 LINE L1 4963 5242 -1715 401 231 30 15 chrX 121850962 121851097 -55123043 + L1M4 LINE L1 5320 5456 -1501 290 115 16 0 chrX 121851997 121852058 -55122082 + (TA)n Simple_repeat Simple_repeat 2 63 0 26 0 0 0 chrX 121852599 121852625 -55121515 + AT_rich Low_complexity Low_complexity 1 26 0 1206 130 42 0 chrX 121853173 121853388 -55120752 - L1MC3 LINE L1 -1 7784 7561 203 211 0 19 chrX 121853420 121853472 -55120668 + (TA)n Simple_repeat Simple_repeat 2 52 0 6994 234 49 35 chrX 121853498 121854432 -55119708 - L1MB4 LINE L1 -36 6144 5225 2250 96 0 0 chrX 121854432 121854724 -55119416 - AluSg SINE Alu -18 292 1 6994 234 49 35 chrX 121854724 121857240 -55116900 - L1MB4 LINE L1 -955 5225 2647 976 197 15 39 chrX 121857385 121857588 -55116552 - MLT1A1 LTR MaLR -164 201 4 214 378 31 8 chrX 121857689 121857816 -55116324 - L2 LINE L2 -250 3022 2893 269 350 15 46 chrX 121857923 121858120 -55116020 + L2 LINE L2 3117 3307 -6 22 35 0 0 chrX 121858456 121858485 -55115655 + AT_rich Low_complexity Low_complexity 1 29 0 1165 279 94 56 chrX 121858493 121858643 -55115497 - HAL1 LINE L1 -31 2476 2333 2078 85 28 3 chrX 121858643 121858925 -55115215 - AluSc SINE Alu -20 289 1 1165 279 94 56 chrX 121858925 121859607 -55114533 - HAL1 LINE L1 -174 2333 1613 666 232 12 0 chrX 121859616 121859780 -55114360 + LTR49-int LTR ERV1 5625 5790 -541 664 223 14 0 chrX 121859853 121859992 -55114148 + LTR49-int LTR ERV1 6083 6223 -108 430 303 48 75 chrX 121862075 121862263 -55111877 - MER91A DNA MER1_type -11 185 3 38 39 0 0 chrX 121862665 121862717 -55111423 + AT_rich Low_complexity Low_complexity 1 52 0 518 317 93 35 chrX 121862846 121863328 -55110812 - L1ME LINE L1 -320 5801 5292 23 33 0 0 chrX 121863335 121863365 -55110775 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chrX 121863574 121863610 -55110530 + AT_rich Low_complexity Low_complexity 1 36 0 235 341 23 11 chrX 121863626 121863714 -55110426 + MIR SINE MIR 58 146 -116 23 33 0 0 chrX 121864806 121864836 -55109304 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chrX 121866871 121866894 -55107246 + AT_rich Low_complexity Low_complexity 1 23 0 2247 158 0 13 chrX 121868376 121868756 -55105384 + THE1C LTR MaLR 1 375 0 201 108 0 0 chrX 121871952 121871989 -55102151 + (TCTCTG)n Simple_repeat Simple_repeat 6 42 0 * 243 170 0 0 chrX 121871980 121872027 -55102113 + (TG)n Simple_repeat Simple_repeat 2 48 0 1726 239 22 0 chrX 121873962 121874331 -55099809 - MSTD LTR MaLR 0 396 20 643 195 0 0 chrX 121874521 121874634 -55099506 + FLAM_A SINE Alu 2 114 -19 686 289 67 10 chrX 121875487 121875695 -55098445 - MIR SINE MIR -14 248 29 441 0 0 0 chrX 121876149 121876198 -55097942 + (TG)n Simple_repeat Simple_repeat 1 49 0 566 241 7 48 chrX 121876617 121876762 -55097378 + MIR SINE MIR 10 148 -114 237 236 110 94 chrX 121876798 121876925 -55097215 + MIR SINE MIR 67 195 -67 422 307 74 11 chrX 121877985 121878161 -55095979 - MER5A DNA MER1_type -2 187 1 841 220 35 5 chrX 121878421 121878621 -55095519 + Charlie1 DNA MER1_type 39 244 -2517 945 144 26 0 chrX 121878637 121878790 -55095350 + MER39B LTR ERV1 1 157 -496 2258 120 59 25 chrX 121878793 121879236 -55094904 + L1M1 LINE L1 2387 2844 -4721 * 11414 203 63 5 chrX 121879232 121882399 -55091741 + L1M1 LINE L1 3697 7054 -669 2302 98 17 20 chrX 121882400 121882756 -55091384 - L1M1 LINE L1 -535 5770 5416 1628 83 0 5 chrX 121882856 121883072 -55091068 + THE1C LTR MaLR 161 375 0 301 330 66 0 chrX 121885574 121885680 -55088460 - L2 LINE L2 0 3313 3201 587 232 17 11 chrX 121885729 121885910 -55088230 - L1ME2 LINE L1 -318 5846 5665 3131 247 36 57 chrX 121885985 121887364 -55086776 + L1MC3 LINE L1 2305 3654 -2492 913 199 86 0 chrX 121887424 121887645 -55086495 + MER34 LTR ERV1 27 266 -276 319 198 91 66 chrX 121888108 121888229 -55085911 - MER34-int LTR ERV1 -4836 1495 1372 502 304 79 34 chrX 121888267 121888533 -55085607 - MER34-int LTR ERV1 -5759 572 295 1779 216 81 40 chrX 121888815 121889311 -55084829 - MER34 LTR ERV1 0 542 27 8256 204 43 16 chrX 121889318 121891255 -55082885 + L1MC3 LINE L1 5268 7255 -530 2438 131 0 15 chrX 121942108 121942504 -55031636 + L1PA16 LINE L1 5777 6166 0 33 56 0 0 chrX 121942672 121942726 -55031414 + AT_rich Low_complexity Low_complexity 1 54 0 180 356 169 31 chrX 121943611 121943771 -55030369 + MER5A DNA MER1_type 3 184 -5 184 283 61 81 chrX 121943914 121944013 -55030127 + L2 LINE L2 3208 3304 -9 708 183 0 8 chrX 121944124 121944250 -55029890 + FLAM_C SINE Alu 1 125 -18 940 293 38 43 chrX 121944830 121945643 -55028497 - L1ME3A LINE L1 -8 6162 3426 536 158 21 0 chrX 121945670 121945765 -55028375 - L1M2 LINE L1 -6751 98 2 225 0 0 0 chrX 121947645 121947670 -55026470 + (GA)n Simple_repeat Simple_repeat 2 26 0 1699 99 69 5 chrX 121947981 121948387 -55025753 + MER75 DNA T2_type 1 514 0 26 50 0 0 chrX 121948824 121948864 -55025276 + AT_rich Low_complexity Low_complexity 1 40 0 3354 195 19 29 chrX 121948864 121949690 -55024450 - L1MA9 LINE L1 -14 6298 5379 6693 142 36 5 chrX 121949726 121950863 -55023277 + Tigger3b DNA MER2_type 60 1231 0 836 272 14 4 chrX 121950869 121950937 -55023203 - L1MA9 LINE L1 -779 5367 5301 333 0 0 0 chrX 121950937 121950974 -55023166 + (TA)n Simple_repeat Simple_repeat 2 38 0 836 272 14 4 chrX 121950974 121951184 -55022956 - L1MA9 LINE L1 -845 5301 5086 2010 139 7 3 chrX 121951877 121952179 -55021961 - AluJb SINE Alu -9 303 1 14473 138 13 32 chrX 121952584 121954916 -55019224 + Tigger1 DNA MER2_type 1 2284 -134 1500 188 0 14 chrX 121954916 121955203 -55018937 - AluJo SINE Alu -21 291 9 14473 138 13 32 chrX 121955203 121955335 -55018805 + Tigger1 DNA MER2_type 2284 2417 -1 7473 36 0 4 chrX 121955718 121957371 -55016769 - L1PA5 LINE L1 -1 6153 4503 192 228 0 0 chrX 121959722 121959779 -55014361 + CT-rich Low_complexity Low_complexity 2 58 0 409 250 0 11 chrX 121960077 121960165 -55013975 - MIR SINE MIR -21 241 155 1112 155 78 26 chrX 121960372 121960643 -55013497 - L1MA9 LINE L1 0 6312 6028 361 294 126 0 chrX 121960643 121960762 -55013378 - MIR SINE MIR -128 134 1 1651 193 10 56 chrX 121961140 121961549 -55012591 - MLT1B LTR MaLR 0 390 1 207 288 0 62 chrX 121961630 121961710 -55012430 - L2 LINE L2 -9 3263 3189 236 344 111 77 chrX 121964125 121965258 -55008882 + L2 LINE L2 1565 2736 -578 318 140 65 19 chrX 121965336 121965443 -55008697 + (TA)n Simple_repeat Simple_repeat 2 113 0 289 317 0 0 chrX 121965443 121965525 -55008615 + MER21B LTR ERV1 15 96 -767 1977 261 50 33 chrX 121965564 121966208 -55007932 + MER21B LTR ERV1 98 752 -111 414 157 9 102 chrX 121966340 121966448 -55007692 + MLT1B-int LTR MaLR 1637 1734 -1 1715 198 18 42 chrX 121966449 121966849 -55007291 + MLT1B LTR MaLR 1 390 0 3283 247 35 40 chrX 121966851 121967804 -55006336 + MER21B-int LTR ERV1 3746 4693 -2065 1986 121 37 79 chrX 121967893 121968273 -55005867 + THE1B LTR MaLR 1 364 0 10634 107 46 2 chrX 121968273 121969786 -55004354 + THE1B-int LTR MaLR 1 1580 0 1984 146 36 30 chrX 121969786 121970148 -55003992 + THE1B LTR MaLR 1 364 0 629 135 15 75 chrX 121970201 121970291 -55003849 + MER21B-int LTR ERV1 3575 3656 -535 1780 176 24 18 chrX 121970291 121970626 -55003514 - MER1B DNA MER1_type 0 337 1 629 135 15 75 chrX 121970626 121970668 -55003472 + MER21B-int LTR ERV1 3656 3699 -492 3192 195 30 3 chrX 121970674 121971268 -55002872 + LTR35 LTR ERV1 1 610 -8 2011 196 21 23 chrX 121971297 121971730 -55002410 + MER21B-int LTR ERV1 3715 4146 -45 2021 239 58 69 chrX 121971818 121972525 -55001615 + MER21B LTR ERV1 13 711 -152 235 311 39 29 chrX 121972526 121972629 -55001511 + MER21B LTR ERV1 651 754 -109 1480 192 43 35 chrX 121972659 121973028 -55001112 + MLT1A2 LTR MaLR 1 372 -2 253 377 63 0 chrX 121973480 121973639 -55000501 - L2 LINE L2 -2170 1144 976 351 386 70 26 chrX 121973702 121974241 -54999899 - L2 LINE L2 -2542 772 210 750 179 51 6 chrX 121974436 121974592 -54999548 - L1PA16 LINE L1 -9 6157 5995 7447 219 52 24 chrX 121974596 121977131 -54997009 + L1MB1 LINE L1 3185 5792 -376 805 244 122 20 chrX 121977131 121977490 -54996650 + MSTC LTR MaLR 1 428 0 1816 183 21 3 chrX 121977492 121977864 -54996276 + L1MB1 LINE L1 5790 6168 0 264 293 106 16 chrX 121978219 121978342 -54995798 + L2 LINE L2 2254 2387 -927 1071 272 30 22 chrX 121978505 121978910 -54995230 + L1MC3 LINE L1 4705 5112 -1034 2036 62 0 0 chrX 121978941 121979184 -54994956 + AluY SINE Alu 1 243 -68 5808 159 4 20 chrX 121979184 121980700 -54993440 + L1PB2 LINE L1 4653 6148 -3 * 6300 208 104 64 chrX 121980697 121982623 -54991517 + L1MC3 LINE L1 5373 7375 -410 312 206 54 11 chrX 121982623 121982715 -54991425 - MLT1D LTR MaLR -2 503 408 835 198 50 45 chrX 121982716 121982938 -54991202 - MLT1D LTR MaLR -275 230 8 1594 205 26 33 chrX 121982938 121983362 -54990778 + L1MC3 LINE L1 7363 7783 -2 34 65 0 0 chrX 121983505 121983567 -54990573 + AT_rich Low_complexity Low_complexity 1 62 0 322 255 32 0 chrX 121983598 121983692 -54990448 - L1ME LINE L1 -393 5728 5632 2507 150 22 22 chrX 121984268 121984714 -54989426 - Tigger2 DNA MER2_type 0 2718 2273 512 116 0 0 chrX 121984704 121984773 -54989367 - Tigger2 DNA MER2_type -2649 69 1 * 31 76 0 0 chrX 121984794 121984860 -54989280 + AT_rich Low_complexity Low_complexity 1 66 0 2099 118 0 16 chrX 121985249 121985554 -54988586 + AluSx SINE Alu 1 300 -12 2142 140 43 0 chrX 121985624 121985973 -54988167 - THE1B LTR MaLR 0 364 1 10420 113 39 4 chrX 121985973 121987499 -54986641 - THE1B-int LTR MaLR -1 1579 1 2069 157 25 3 chrX 121987499 121987855 -54986285 - THE1B LTR MaLR 0 364 1 1232 113 9 9 chrX 121988569 121988781 -54985359 + L1MA1 LINE L1 5961 6172 -130 269 53 0 0 chrX 121988779 121988817 -54985323 + L1MA3 LINE L1 6268 6305 0 * 21 57 0 0 chrX 121989353 121989388 -54984752 + AT_rich Low_complexity Low_complexity 1 35 0 195 301 21 21 chrX 121989607 121989700 -54984440 + MIR SINE MIR 50 142 -66 979 325 100 20 chrX 121989776 121990451 -54983689 + L2 LINE L2 2580 3313 0 21 57 0 0 chrX 121990512 121990547 -54983593 + AT_rich Low_complexity Low_complexity 1 35 0 29 70 0 0 chrX 121991024 121991081 -54983059 + AT_rich Low_complexity Low_complexity 1 57 0 329 259 177 49 chrX 121991166 121991409 -54982731 - L1M4 LINE L1 -3311 2835 2562 846 235 5 0 chrX 121991492 121991679 -54982461 - MER5A DNA MER1_type -1 188 1 388 333 60 12 chrX 121991689 121991857 -54982283 + MER5B DNA MER1_type 2 177 -1 658 230 51 72 chrX 121992146 121992381 -54981759 - MIR SINE MIR 0 262 33 669 278 158 25 chrX 121992798 121993115 -54981025 - MLT1B LTR MaLR -11 379 21 225 0 0 0 chrX 121993146 121993171 -54980969 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 2105 125 0 0 chrX 121993173 121993461 -54980679 - AluSx SINE Alu -24 288 1 24 0 0 0 chrX 121994027 121994051 -54980089 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chrX 121994130 121994153 -54979987 + (CAAT)n Simple_repeat Simple_repeat 1 23 0 859 166 0 7 chrX 121994329 121994474 -54979666 + MLT1A1 LTR MaLR 1 144 -221 630 174 16 16 chrX 121994469 121994590 -54979550 + MLT1A1 LTR MaLR 245 365 0 * 3434 249 156 88 chrX 121994592 121996215 -54977925 + MLT1A1-int LTR MaLR 2 1735 0 623 155 0 0 chrX 121996215 121996318 -54977822 + MLT1A1 LTR MaLR 1 103 -262 254 277 172 23 chrX 121997843 121998099 -54976041 - L1MC/D LINE L1 -2231 5577 5284 201 196 20 0 chrX 121998253 121998304 -54975836 + (TTTAA)n Simple_repeat Simple_repeat 2 53 0 6297 104 9 47 chrX 121998308 121999378 -54974762 - L1MA2 LINE L1 -16 6288 5259 3736 189 14 9 chrX 121999373 122000186 -54973954 - L1MA2 LINE L1 -1109 5037 4221 * 802 174 50 6 chrX 122200186 122200347 -54773793 - L1M1 LINE L1 -7362 203 36 1701 179 9 17 chrX 122200431 122200777 -54773363 - MER7A DNA MER2_type -3 343 3 381 116 0 0 chrX 122200860 122200929 -54773211 + (TA)n Simple_repeat Simple_repeat 1 69 0 579 67 0 44 chrX 122201310 122201400 -54772740 + MLT2A2 LTR ERVL 368 453 0 3978 251 11 12 chrX 122201405 122202354 -54771786 + L1 LINE L1 591 1538 -6027 617 206 0 0 chrX 122202454 122202595 -54771545 + L1MA7 LINE L1 6147 6287 -4 24 32 0 0 chrX 122202673 122202704 -54771436 + AT_rich Low_complexity Low_complexity 1 31 0 1326 254 53 5 chrX 122203983 122204357 -54769783 - MSTD LTR MaLR -4 392 1 21 36 0 0 chrX 122204543 122204571 -54769569 + AT_rich Low_complexity Low_complexity 1 28 0 479 243 0 21 chrX 122204659 122204799 -54769341 - L1MA9 LINE L1 -8 6304 6168 2648 277 43 17 chrX 122206068 122207234 -54766906 - L1M4 LINE L1 -2291 3855 2660 252 86 0 0 chrX 122207415 122207450 -54766690 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 5232 244 43 10 chrX 122207467 122209008 -54765132 + L1 LINE L1 5009 6601 -964 359 253 103 119 chrX 122209876 122210188 -54763952 + MLT1A1 LTR MaLR 17 323 -42 813 229 24 61 chrX 122211150 122211310 -54762830 + L1M4 LINE L1 3591 3734 -2412 1360 227 24 86 chrX 122211310 122211766 -54762374 - MER34 LTR ERV1 -2 540 125 1782 161 6 3 chrX 122211766 122212077 -54762063 + AluSx SINE Alu 1 312 0 1360 227 24 86 chrX 122212077 122212193 -54761947 - MER34 LTR ERV1 -417 125 3 813 229 24 61 chrX 122212193 122212360 -54761780 + L1M4 LINE L1 3734 3906 -2240 9038 207 46 14 chrX 122212474 122213565 -54760575 - L1PBa LINE L1 -1871 4991 3936 183 80 0 0 chrX 122213565 122213590 -54760550 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 9038 207 46 14 chrX 122213590 122216046 -54758094 - L1PBa LINE L1 -2926 3936 1298 300 250 0 0 chrX 122216047 122216107 -54758033 - L1PBa LINE L1 -5711 1152 1093 4220 229 53 2 chrX 122216109 122217100 -54757040 - L1PBa LINE L1 -5816 1047 6 10857 186 14 7 chrX 122217313 122219937 -54754203 - L1M1 LINE L1 -692 7029 4387 3538 216 21 33 chrX 122219936 122220728 -54753412 - L1M1 LINE L1 -6761 804 22 * 1749 179 12 65 chrX 122220894 122221324 -54752816 - L1MA7 LINE L1 -261 6030 5624 1328 173 30 0 chrX 122221324 122221595 -54752545 + L1MA7 LINE L1 6009 6287 -4 2725 160 14 23 chrX 122222667 122222957 -54751183 + L1MA6 LINE L1 5785 6069 -231 1797 126 63 77 chrX 122222957 122223321 -54750819 - THE1B LTR MaLR -2 362 4 2725 160 14 23 chrX 122223321 122223548 -54750592 + L1MA6 LINE L1 6069 6297 -3 282 51 0 26 chrX 122225061 122225100 -54749040 - MLT2A2 LTR ERVL 0 453 416 261 0 0 0 chrX 122225100 122225129 -54749011 + (TG)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chrX 122225128 122225151 -54748989 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 930 98 0 8 chrX 122225151 122225284 -54748856 + MLT2A1 LTR ERVL 273 404 -40 381 167 38 8 chrX 122225284 122225416 -54748724 + (TA)n Simple_repeat Simple_repeat 2 137 0 890 132 28 0 chrX 122225517 122225661 -54748479 - MLT2A1 LTR ERVL -294 150 3 9685 81 9 0 chrX 122225663 122226928 -54747212 - HERVL-A1 LTR ERVL 0 5654 4379 3393 70 0 0 chrX 122226922 122227348 -54746792 - HERVL-A1 LTR ERVL -1403 4251 3826 * 28993 78 3 2 chrX 122227349 122231066 -54743074 - HERVL-A1 LTR ERVL -1934 3720 1 327 65 0 22 chrX 122231066 122231112 -54743028 - MLT2A1 LTR ERVL 0 453 409 24 32 0 0 chrX 122231129 122231160 -54742980 + AT_rich Low_complexity Low_complexity 1 31 0 682 93 0 0 chrX 122231162 122231259 -54742881 - HERVL LTR ERVL -4554 1100 1004 860 7 0 93 chrX 122231259 122231550 -54742590 + (TA)n Simple_repeat Simple_repeat 1 263 0 2805 83 34 3 chrX 122231552 122231936 -54742204 - MLT2A1 LTR ERVL -48 396 1 450 0 0 0 chrX 122232381 122232431 -54741709 + (CA)n Simple_repeat Simple_repeat 2 51 0 602 166 107 30 chrX 122232942 122233111 -54741029 - MER53 DNA DNA -7 182 1 15553 111 8 29 chrX 122233206 122235614 -54738526 + L1PA5 LINE L1 1 2357 -3789 22375 61 1 0 chrX 122235616 122239314 -54734826 + L1PA5 LINE L1 2453 6154 0 22 88 0 0 chrX 122239592 122239649 -54734491 + AT_rich Low_complexity Low_complexity 1 57 0 307 386 32 32 chrX 122239735 122239893 -54734247 + L2 LINE L2 3106 3263 -9 24 0 0 0 chrX 122240844 122240868 -54733272 + AT_rich Low_complexity Low_complexity 1 24 0 1194 7 0 0 chrX 122241741 122241877 -54732263 + L1PA2 LINE L1 6019 6154 -1 309 89 0 0 chrX 122242217 122242262 -54731878 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chrX 122243020 122243041 -54731099 + AT_rich Low_complexity Low_complexity 1 21 0 2721 39 0 0 chrX 122243203 122243514 -54730626 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 122244762 122244784 -54729356 + AT_rich Low_complexity Low_complexity 1 22 0 1397 211 77 4 chrX 122245145 122245259 -54728881 + AluJb SINE Alu 3 107 -205 272 49 49 0 chrX 122245259 122245300 -54728840 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1397 211 77 4 chrX 122245300 122245446 -54728694 + AluJb SINE Alu 107 282 -30 1917 125 0 7 chrX 122245765 122246037 -54728103 - AluSc SINE Alu -39 270 1 188 361 180 31 chrX 122246281 122246363 -54727777 + L2 LINE L2 1918 1986 -1328 2099 131 0 0 chrX 122246363 122246653 -54727487 - AluSg SINE Alu -15 295 6 188 361 180 31 chrX 122246653 122247019 -54727121 + L2 LINE L2 1986 2433 -881 1722 66 0 9 chrX 122247130 122247358 -54726782 + L1PA8 LINE L1 5932 6157 -15 703 288 30 15 chrX 122247741 122247939 -54726201 + MIR SINE MIR 4 204 -58 5649 62 16 21 chrX 122248417 122248864 -54725276 + MER4E LTR ERV1 1 449 -317 3773 99 0 4 chrX 122248864 122249377 -54724763 + MER9 LTR ERVK 1 511 0 5649 62 16 21 chrX 122249377 122249465 -54724675 + MER4E LTR ERV1 449 536 -230 2400 80 0 3 chrX 122249465 122249766 -54724374 - AluY SINE Alu -11 300 1 5649 62 16 21 chrX 122249766 122249999 -54724141 + MER4E LTR ERV1 536 766 0 198 0 0 0 chrX 122251159 122251181 -54722959 + (T)n Simple_repeat Simple_repeat 1 22 0 22 70 0 0 chrX 122251916 122251959 -54722181 + AT_rich Low_complexity Low_complexity 1 43 0 833 138 16 2 chrX 122252136 122252270 -54721870 - MSTB1 LTR MaLR -3 419 274 19068 113 61 39 chrX 122252275 122255541 -54718599 + MER61-int LTR ERV1 9 3347 -1870 6217 93 20 6 chrX 122255541 122257036 -54717104 + L1PA11 LINE L1 4666 6169 -5 1175 105 21 11 chrX 122257036 122257227 -54716913 + L1MA1 LINE L1 6110 6302 0 2798 255 64 62 chrX 122257498 122259087 -54715053 + L1M4 LINE L1 829 2415 -4229 931 233 15 0 chrX 122259087 122259293 -54714847 + MER6B DNA MER2_type 2 210 0 2798 255 64 62 chrX 122259293 122259468 -54714672 + L1M4 LINE L1 2415 2588 -4056 5484 26 2 0 chrX 122259468 122260110 -54714030 + L1PA4 LINE L1 5505 6147 -8 2798 255 64 62 chrX 122260110 122260400 -54713740 + L1M4 LINE L1 2588 2865 -3779 3466 173 33 5 chrX 122260402 122261037 -54713103 - MSTA-int LTR MaLR -998 653 1 2210 131 88 8 chrX 122261037 122261433 -54712707 - MSTA LTR MaLR 0 428 1 1451 223 0 14 chrX 122262189 122262481 -54711659 - AluJo SINE Alu -24 288 1 722 205 16 0 chrX 122265256 122265441 -54708699 - L1MA7 LINE L1 -2 6289 6102 5102 149 10 16 chrX 122265460 122266012 -54708128 + L1PB4 LINE L1 5222 5767 -389 429 20 0 0 chrX 122266012 122266062 -54708078 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 5102 149 10 16 chrX 122266062 122266449 -54707691 + L1PB4 LINE L1 5767 6155 -1 559 159 43 61 chrX 122266447 122266611 -54707529 - L1MA7 LINE L1 -159 6030 5927 * 2292 72 0 33 chrX 122267719 122268025 -54706115 - AluY SINE Alu -13 298 3 23 33 0 0 chrX 122268028 122268058 -54706082 + AT_rich Low_complexity Low_complexity 1 30 0 645 141 16 0 chrX 122268059 122268180 -54705960 - L1MA8 LINE L1 -12 6279 6157 907 113 25 6 chrX 122268180 122268340 -54705800 + L1M2 LINE L1 5274 5436 -855 441 324 28 28 chrX 122268568 122268747 -54705393 - MIR SINE MIR -14 248 70 29 0 0 0 chrX 122268893 122268922 -54705218 + AT_rich Low_complexity Low_complexity 1 29 0 215 371 10 0 chrX 122268983 122269080 -54705060 - MER5B DNA MER1_type -11 167 70 180 0 0 0 chrX 122271075 122271095 -54703045 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 242 266 124 24 chrX 122271126 122271295 -54702845 - L1M4 LINE L1 -1054 5092 4907 4195 75 82 24 chrX 122271880 122272504 -54701636 + PABL_A LTR ERV1 1 660 0 32080 76 58 48 chrX 122272504 122276074 -54698066 + PABL_A-int LTR ERV1 1 3636 -1379 2303 71 0 0 chrX 122276074 122276380 -54697760 + AluY SINE Alu 1 306 0 32080 76 58 48 chrX 122276380 122277774 -54696366 + PABL_A-int LTR ERV1 3636 5015 0 4121 84 68 43 chrX 122277774 122278418 -54695722 + PABL_A LTR ERV1 1 660 0 182 406 0 21 chrX 122278581 122278677 -54695463 - MER5A DNA MER1_type -53 136 43 330 26 0 0 chrX 122279452 122279491 -54694649 + (CA)n Simple_repeat Simple_repeat 2 40 0 1703 198 30 0 chrX 122279998 122280332 -54693808 - MER2 DNA MER2_type 0 344 1 2960 195 28 5 chrX 122280391 122280954 -54693186 + L1M1 LINE L1 13 588 -6977 2028 156 32 52 chrX 122280956 122281517 -54692623 + MLT2A2 LTR ERVL 1 554 0 9483 215 49 41 chrX 122281562 122285743 -54688397 + L1M1 LINE L1 654 5223 -2342 365 149 0 14 chrX 122285743 122285817 -54688323 + L1MA2 LINE L1 6232 6304 0 312 254 164 0 chrX 122285897 122286019 -54688121 - MIR SINE MIR -51 211 70 510 281 111 6 chrX 122286053 122286224 -54687916 + MER5A DNA MER1_type 1 189 0 225 333 0 0 chrX 122286455 122286518 -54687622 + MIR3 SINE MIR 111 173 -35 663 241 88 102 chrX 122286531 122286883 -54687257 - MLT1A1 LTR MaLR 0 365 19 26 0 0 0 chrX 122287635 122287661 -54686479 + AT_rich Low_complexity Low_complexity 1 26 0 1882 124 33 33 chrX 122287677 122287983 -54686157 - AluSx SINE Alu -3 309 4 276 264 7 115 chrX 122288119 122288267 -54685873 + L2 LINE L2 2917 3048 -224 598 208 0 76 chrX 122288795 122288939 -54685201 - FLAM_A SINE Alu 0 133 1 295 336 88 0 chrX 122289185 122289322 -54684818 - MIR SINE MIR -82 180 32 1539 203 46 28 chrX 122289601 122289990 -54684150 - MSTD LTR MaLR 0 396 1 295 302 1 25 chrX 122290396 122290482 -54683658 - MIR3 SINE MIR -133 75 1 4314 223 54 2 chrX 122290750 122291622 -54682518 + L1PA13 LINE L1 5 921 -5866 7283 202 18 16 chrX 122291639 122293822 -54680318 + L1PA13 LINE L1 1476 3672 -3125 1871 196 37 34 chrX 122293822 122294043 -54680097 - MLT2A2 LTR ERVL 0 554 335 2185 142 5 32 chrX 122294043 122294417 -54679723 + THE1B LTR MaLR 1 364 0 1871 196 37 34 chrX 122294417 122294749 -54679391 - MLT2A2 LTR ERVL -219 335 1 10793 181 17 35 chrX 122294749 122297086 -54677054 + L1PA13 LINE L1 3668 5961 -836 3760 108 2 7 chrX 122297086 122297653 -54676487 + L1PA13 LINE L1 6246 6809 -5 2095 311 41 18 chrX 122297789 122298513 -54675627 + L2 LINE L2 2079 2819 -495 882 184 68 16 chrX 122298523 122298593 -54675547 - MER33 DNA MER1_type -2270 315 250 1674 181 16 13 chrX 122298593 122298897 -54675243 + AluJb SINE Alu 1 305 -7 882 184 68 16 chrX 122298897 122299076 -54675064 - MER33 DNA MER1_type -2335 250 53 4035 157 8 14 chrX 122299082 122299361 -54674779 - L1MA2 LINE L1 0 6304 6026 2222 238 19 76 chrX 122299361 122300114 -54674026 - L1PA16 LINE L1 -138 6028 5319 443 197 0 0 chrX 122300122 122300193 -54673947 - MER33 DNA MER1_type -253 71 1 1088 289 101 41 chrX 122300202 122300669 -54673471 + L2 LINE L2 2819 3313 0 183 342 117 0 chrX 122300771 122300882 -54673258 - L2 LINE L2 0 3313 3190 385 245 75 68 chrX 122300886 122301151 -54672989 + L1MB5 LINE L1 5733 5999 -175 * 1591 192 83 36 chrX 122300917 122301220 -54672920 + L1MD1 LINE L1 5760 6092 -150 2456 114 11 0 chrX 122301220 122301580 -54672560 + THE1B LTR MaLR 1 364 0 1591 192 83 36 chrX 122301580 122301724 -54672416 + L1MD1 LINE L1 6092 6228 -14 276 350 21 0 chrX 122301768 122301865 -54672275 - L2 LINE L2 -219 3053 2955 187 395 12 37 chrX 122301867 122302029 -54672111 - L2 LINE L2 -616 2698 2541 308 321 64 48 chrX 122302571 122302820 -54671320 + L2 LINE L2 2218 2470 -844 353 272 96 34 chrX 122303421 122303807 -54670333 - L1ME LINE L1 -594 5576 5163 385 324 118 51 chrX 122303939 122304565 -54669575 - L1ME LINE L1 -1100 5046 4379 263 314 92 38 chrX 122304997 122305258 -54668882 - L1ME LINE L1 -2264 3882 3608 5534 228 47 21 chrX 122305779 122305953 -54668187 + L1MB7 LINE L1 3573 3741 -2443 1588 224 23 82 chrX 122305953 122306408 -54667732 - MER34 LTR ERV1 -2 540 124 1985 129 6 3 chrX 122306408 122306719 -54667421 + AluSx SINE Alu 1 312 0 1588 224 23 82 chrX 122306719 122306835 -54667305 - MER34 LTR ERV1 -418 124 3 5534 228 47 21 chrX 122306835 122309190 -54664950 + L1MB7 LINE L1 3741 6170 -14 201 213 0 0 chrX 122309248 122309295 -54664845 + (TG)n Simple_repeat Simple_repeat 1 47 0 311 284 123 19 chrX 122309302 122309457 -54664683 - L1ME LINE L1 -2652 3494 3324 334 159 32 16 chrX 122309467 122309541 -54664599 + MER34C LTR ERV1 1 101 -467 384 77 0 0 chrX 122309541 122309593 -54664547 + (TG)n Simple_repeat Simple_repeat 1 52 0 2224 110 3 0 chrX 122310585 122310894 -54663246 - AluSg SINE Alu 0 310 1 222 385 37 0 chrX 122310915 122311024 -54663116 + L2 LINE L2 2662 2774 -540 3680 130 47 0 chrX 122311380 122311955 -54662185 + LTR43 LTR ERV1 1 602 0 412 381 65 20 chrX 122312128 122312530 -54661610 - L2 LINE L2 -573 2741 2322 409 293 47 0 chrX 122312749 122312855 -54661285 - L2 LINE L2 -3 3310 3200 603 214 13 122 chrX 122313017 122313246 -54660894 + MER3 DNA MER1_type 6 209 0 517 344 27 5 chrX 122313291 122313477 -54660663 + MIR SINE MIR 2 191 -71 6647 147 13 18 chrX 122313513 122315292 -54658848 + L1MA2 LINE L1 4529 6304 0 252 216 40 27 chrX 122315843 122315917 -54658223 - MER116 DNA Mariner -5 75 1 414 281 43 78 chrX 122316010 122316241 -54657899 + MIR SINE MIR 32 254 -8 330 67 0 0 chrX 122317180 122317225 -54656915 + (CA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chrX 122318333 122318358 -54655782 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chrX 122318409 122318430 -54655710 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2089 13 0 0 chrX 122318430 122318667 -54655473 - L1PA4 LINE L1 -18 6137 5901 754 276 35 13 chrX 122318875 122319107 -54655033 - Charlie8 DNA MER1_type -2153 264 28 378 318 104 29 chrX 122319253 122319426 -54654714 + MIR3 SINE MIR 16 201 -7 219 154 0 0 chrX 122319911 122319950 -54654190 - L2 LINE L2 -6 3307 3269 200 222 0 0 chrX 122320049 122320094 -54654046 + T-rich Low_complexity Low_complexity 1 45 0 1614 163 0 42 chrX 122320276 122320564 -54653576 + AluJo SINE Alu 1 276 -36 336 143 0 0 chrX 122320572 122320628 -54653512 + (GGGAGA)n Simple_repeat Simple_repeat 6 61 0 7595 187 35 11 chrX 122320633 122322751 -54651389 + L1PB4 LINE L1 3576 5769 -387 1768 148 80 17 chrX 122322751 122323103 -54651037 - THE1C LTR MaLR 0 375 2 7595 187 35 11 chrX 122323103 122323478 -54650662 + L1PB4 LINE L1 5769 6133 -23 2566 41 3 0 chrX 122323895 122324211 -54649929 - L1PA7 LINE L1 0 6154 5838 504 342 111 4 chrX 122324482 122324707 -54649433 - MIR SINE MIR -12 250 2 351 0 0 0 chrX 122326619 122326658 -54647482 + (TG)n Simple_repeat Simple_repeat 2 40 0 373 375 21 10 chrX 122327189 122327381 -54646759 - L3 LINE CR1 -20 1557 1364 203 341 106 8 chrX 122327489 122327612 -54646528 - L3 LINE CR1 -797 780 646 6607 184 52 67 chrX 122328126 122328861 -54645279 + L1 LINE L1 2788 3533 -2613 207 0 0 0 chrX 122328861 122328884 -54645256 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6607 184 52 67 chrX 122328884 122328997 -54645143 + L1 LINE L1 3533 3646 -2500 1888 168 7 0 chrX 122328997 122329307 -54644833 + AluSx SINE Alu 1 312 0 6607 184 52 67 chrX 122329307 122330319 -54643821 + L1 LINE L1 3646 4621 -1525 3595 189 35 33 chrX 122330742 122331591 -54642549 - L1MB7 LINE L1 -17 6167 5317 24 0 0 0 chrX 122331591 122331615 -54642525 + AT_rich Low_complexity Low_complexity 1 24 0 7910 229 44 40 chrX 122331629 122332162 -54641978 - L1MC1 LINE L1 0 6831 6302 1859 140 0 17 chrX 122332162 122332455 -54641685 + AluSx SINE Alu 1 288 -24 7910 229 44 40 chrX 122332455 122335742 -54638398 - L1MC1 LINE L1 -529 6302 2990 2266 73 0 7 chrX 122335742 122336031 -54638109 - AluSq SINE Alu -26 287 1 7910 229 44 40 chrX 122336031 122336292 -54637848 - L1MC1 LINE L1 -3841 2990 2732 2097 253 39 22 chrX 122336308 122337201 -54636939 - L1MC1 LINE L1 -4487 2159 754 21 0 0 0 chrX 122337239 122337260 -54636880 + AT_rich Low_complexity Low_complexity 1 21 0 38323 83 9 6 chrX 122337260 122343379 -54630761 - L1PA6 LINE L1 -11 6143 9 365 319 0 0 chrX 122343457 122343551 -54630589 - L1MC1 LINE L1 -5799 743 650 607 323 5 5 chrX 122343578 122343770 -54630370 - L1MC1 LINE L1 -5881 661 470 1976 195 25 79 chrX 122343770 122344260 -54629880 + MLT2B1 LTR ERVL 5 377 -37 2276 206 2 2 chrX 122344300 122344717 -54629423 - MER47B DNA MER2_type -1 417 1 344 98 0 0 chrX 122344741 122344798 -54629342 + MLT2B1 LTR ERVL 459 520 0 648 229 17 51 chrX 122344835 122345010 -54629130 - L1MC1 LINE L1 -6109 433 265 21 0 0 0 chrX 122345015 122345036 -54629104 + AT_rich Low_complexity Low_complexity 1 21 0 1629 259 45 29 chrX 122345036 122345662 -54628478 - L1M4 LINE L1 -1007 5139 4504 23 0 0 0 chrX 122346497 122346520 -54627620 + AT_rich Low_complexity Low_complexity 1 23 0 2086 81 7 49 chrX 122346592 122346900 -54627240 + AluY SINE Alu 1 295 -16 21 0 0 0 chrX 122348247 122348268 -54625872 + AT_rich Low_complexity Low_complexity 1 21 0 2064 177 32 22 chrX 122348706 122349107 -54625033 + MLT2C2 LTR ERVL 5 409 -55 265 136 24 0 chrX 122349161 122349211 -54624929 + MLT2C1 LTR ERVL 356 397 0 1646 44 0 10 chrX 122349233 122349469 -54624671 + AluY SINE Alu 80 313 0 22 0 0 0 chrX 122350134 122350156 -54623984 + AT_rich Low_complexity Low_complexity 1 22 0 582 335 40 28 chrX 122350539 122350790 -54623350 + MIR SINE MIR 2 255 -7 1791 162 7 13 chrX 122351229 122351537 -54622603 - AluSx SINE Alu -5 307 2 24 0 0 0 chrX 122352211 122352235 -54621905 + AT_rich Low_complexity Low_complexity 1 24 0 6384 159 18 4 chrX 122352239 122354119 -54620021 - L1MA3 LINE L1 0 7724 5821 24 85 0 0 chrX 122354130 122354189 -54619951 + AT_rich Low_complexity Low_complexity 1 59 0 345 174 0 81 chrX 122354242 122354328 -54619812 - L1MA5A LINE L1 0 6297 6219 2053 27 0 0 chrX 122354608 122354864 -54619276 + L1P LINE L1 5081 5336 -810 186 43 0 0 chrX 122354924 122354947 -54619193 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1893 157 9 3 chrX 122354949 122355294 -54618846 - L1MA2 LINE L1 -99 6205 5859 * 2921 113 7 0 chrX 122355293 122355725 -54618415 + L1MA2 LINE L1 5404 5838 -467 1481 197 29 3 chrX 122355713 122356028 -54618112 - L1MA3 LINE L1 -1735 5830 5508 * 2995 200 23 29 chrX 122356034 122357351 -54616789 - L1MA3 LINE L1 -3251 4314 3006 23 0 0 0 chrX 122357351 122357374 -54616766 + AT_rich Low_complexity Low_complexity 1 23 0 5228 157 19 20 chrX 122357395 122358917 -54615223 - L1PB2 LINE L1 -28 6123 4614 15030 197 25 11 chrX 122358922 122360497 -54613643 - L1MA3 LINE L1 -4548 3017 1382 2276 108 0 0 chrX 122360497 122360793 -54613347 - AluSg SINE Alu -14 296 1 15030 197 25 11 chrX 122360793 122362159 -54611981 - L1MA3 LINE L1 -6183 1382 36 309 318 16 16 chrX 122362191 122362243 -54611897 - L1ME LINE L1 -375 5746 5695 1835 171 6 14 chrX 122362243 122362589 -54611551 - MER7A DNA MER2_type -3 343 3 309 318 16 16 chrX 122362589 122362662 -54611478 - L1ME LINE L1 -425 5696 5621 370 75 30 0 chrX 122362671 122362738 -54611402 + (TA)n Simple_repeat Simple_repeat 2 70 0 238 224 104 30 chrX 122362942 122363009 -54611131 - MLT1K LTR MaLR -7 581 510 376 317 14 41 chrX 122363828 122363973 -54610167 - MIR3 SINE MIR -50 158 18 21 0 0 0 chrX 122364032 122364053 -54610087 + AT_rich Low_complexity Low_complexity 1 21 0 566 259 41 7 chrX 122364139 122364286 -54609854 + HAL1 LINE L1 560 711 -1796 268 308 109 50 chrX 122364368 122364689 -54609451 - LTR16A1 LTR ERVL 0 457 118 374 322 37 24 chrX 122364782 122365077 -54609063 - L1M4 LINE L1 -2002 4144 3846 292 274 42 0 chrX 122365085 122365180 -54608960 - L1M4 LINE L1 -2355 3791 3693 373 375 21 10 chrX 122365861 122366053 -54608087 - L3 LINE CR1 -20 1557 1364 203 341 106 8 chrX 122366161 122366284 -54607856 - L3 LINE CR1 -797 780 646 6774 183 52 60 chrX 122366798 122367533 -54606607 + L1 LINE L1 2788 3527 -2619 207 0 0 0 chrX 122367533 122367556 -54606584 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6774 183 52 60 chrX 122367556 122367669 -54606471 + L1 LINE L1 3527 3639 -2507 1888 168 7 0 chrX 122367669 122367979 -54606161 + AluSx SINE Alu 1 312 0 6774 183 52 60 chrX 122367979 122368977 -54605163 + L1 LINE L1 3639 4621 -1525 3595 189 35 33 chrX 122369401 122370250 -54603890 - L1MB7 LINE L1 -17 6167 5317 24 0 0 0 chrX 122370250 122370274 -54603866 + AT_rich Low_complexity Low_complexity 1 24 0 7819 230 44 39 chrX 122370288 122370821 -54603319 - L1MC1 LINE L1 0 6831 6303 1859 140 0 17 chrX 122370821 122371114 -54603026 + AluSx SINE Alu 1 288 -24 7819 230 44 39 chrX 122371114 122374394 -54599746 - L1MC1 LINE L1 -528 6303 2990 2266 73 0 7 chrX 122374394 122374683 -54599457 - AluSq SINE Alu -26 287 1 7819 230 44 39 chrX 122374683 122374944 -54599196 - L1MC1 LINE L1 -3841 2990 2732 2097 254 39 22 chrX 122374960 122375853 -54598287 - L1MC1 LINE L1 -4487 2159 754 21 0 0 0 chrX 122375891 122375912 -54598228 + AT_rich Low_complexity Low_complexity 1 21 0 38361 82 9 6 chrX 122375912 122382031 -54592109 - L1PA6 LINE L1 -11 6143 9 365 319 0 0 chrX 122382109 122382203 -54591937 - L1MC1 LINE L1 -5799 743 650 607 323 5 5 chrX 122382230 122382422 -54591718 - L1MC1 LINE L1 -5881 661 470 1963 192 24 81 chrX 122382422 122382891 -54591249 + MLT2B1 LTR ERVL 5 446 -74 2251 209 2 2 chrX 122382952 122383369 -54590771 - MER47B DNA MER2_type -1 417 1 344 98 0 0 chrX 122383393 122383450 -54590690 + MLT2B1 LTR ERVL 459 520 0 648 229 17 51 chrX 122383487 122383662 -54590478 - L1MC1 LINE L1 -6109 433 265 21 0 0 0 chrX 122383667 122383688 -54590452 + AT_rich Low_complexity Low_complexity 1 21 0 1635 265 37 21 chrX 122383688 122384314 -54589826 - L1M4 LINE L1 -1007 5139 4504 23 0 0 0 chrX 122385149 122385172 -54588968 + AT_rich Low_complexity Low_complexity 1 23 0 2088 81 7 52 chrX 122385244 122385554 -54588586 + AluY SINE Alu 1 296 -15 21 0 0 0 chrX 122386901 122386922 -54587218 + AT_rich Low_complexity Low_complexity 1 21 0 2064 177 32 22 chrX 122387360 122387761 -54586379 + MLT2C2 LTR ERVL 5 409 -55 265 136 24 0 chrX 122387815 122387865 -54586275 + MLT2C1 LTR ERVL 356 397 0 1646 44 0 10 chrX 122387887 122388123 -54586017 + AluY SINE Alu 80 313 0 22 0 0 0 chrX 122388787 122388809 -54585331 + AT_rich Low_complexity Low_complexity 1 22 0 582 335 40 28 chrX 122389192 122389443 -54584697 + MIR SINE MIR 2 255 -7 1800 162 7 13 chrX 122389882 122390191 -54583949 - AluSx SINE Alu -4 308 2 24 0 0 0 chrX 122390865 122390889 -54583251 + AT_rich Low_complexity Low_complexity 1 24 0 6376 160 18 4 chrX 122390893 122392773 -54581367 - L1MA3 LINE L1 0 7724 5821 24 85 0 0 chrX 122392784 122392843 -54581297 + AT_rich Low_complexity Low_complexity 1 59 0 345 174 0 81 chrX 122392896 122392982 -54581158 - L1MA5A LINE L1 0 6297 6219 2053 27 0 0 chrX 122393262 122393518 -54580622 + L1P LINE L1 5081 5336 -810 186 43 0 0 chrX 122393578 122393601 -54580539 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 1893 157 9 3 chrX 122393603 122393948 -54580192 - L1MA2 LINE L1 -99 6205 5859 * 2921 113 7 0 chrX 122393947 122394379 -54579761 + L1MA2 LINE L1 5404 5838 -467 1481 197 29 3 chrX 122394367 122394682 -54579458 - L1MA3 LINE L1 -1735 5830 5508 * 2995 200 23 29 chrX 122394688 122396005 -54578135 - L1MA3 LINE L1 -3251 4314 3006 23 0 0 0 chrX 122396005 122396028 -54578112 + AT_rich Low_complexity Low_complexity 1 23 0 5228 155 19 20 chrX 122396049 122397571 -54576569 - L1PB2 LINE L1 -28 6123 4614 15030 197 25 11 chrX 122397576 122399151 -54574989 - L1MA3 LINE L1 -4548 3017 1382 2276 108 0 0 chrX 122399151 122399447 -54574693 - AluSg SINE Alu -14 296 1 15030 197 25 11 chrX 122399447 122400813 -54573327 - L1MA3 LINE L1 -6183 1382 36 309 318 16 16 chrX 122400845 122400897 -54573243 - L1ME LINE L1 -375 5746 5695 1835 171 6 14 chrX 122400897 122401243 -54572897 - MER7A DNA MER2_type -3 343 3 309 318 16 16 chrX 122401243 122401316 -54572824 - L1ME LINE L1 -425 5696 5621 370 75 30 0 chrX 122401325 122401392 -54572748 + (TA)n Simple_repeat Simple_repeat 2 70 0 238 224 104 30 chrX 122401596 122401663 -54572477 - MLT1K LTR MaLR -7 581 510 376 317 14 41 chrX 122402482 122402627 -54571513 - MIR3 SINE MIR -50 158 18 21 0 0 0 chrX 122402686 122402707 -54571433 + AT_rich Low_complexity Low_complexity 1 21 0 566 259 41 7 chrX 122402793 122402940 -54571200 + HAL1 LINE L1 560 711 -1796 268 308 109 50 chrX 122403022 122403343 -54570797 - LTR16A1 LTR ERVL 0 457 118 406 319 37 24 chrX 122403436 122403731 -54570409 - L1M4 LINE L1 -2002 4144 3846 292 274 42 0 chrX 122403739 122403834 -54570306 - L1M4 LINE L1 -2355 3791 3693 494 267 61 6 chrX 122404004 122404184 -54569956 + L1M3 LINE L1 3445 3634 -2512 28 0 0 0 chrX 122404231 122404259 -54569881 + AT_rich Low_complexity Low_complexity 1 28 0 786 287 86 25 chrX 122404259 122405439 -54568701 + L1M3 LINE L1 4199 5503 -677 251 281 11 45 chrX 122405679 122405768 -54568372 + L2 LINE L2 3164 3249 -64 639 240 7 76 chrX 122405839 122406133 -54568007 + MSTD LTR MaLR 1 263 -102 586 323 125 58 chrX 122406133 122406758 -54567382 + L2 LINE L2 2289 2955 -359 444 254 0 85 chrX 122406946 122407076 -54567064 + L2 LINE L2 3139 3257 -15 240 35 0 0 chrX 122407170 122407199 -54566941 + (CA)n Simple_repeat Simple_repeat 2 30 0 5449 167 14 33 chrX 122407199 122408852 -54565288 + L1PA16 LINE L1 4409 6021 -145 1966 173 60 36 chrX 122408852 122409268 -54564872 - MSTB LTR MaLR 0 426 1 5449 167 14 33 chrX 122409268 122409403 -54564737 + L1PA16 LINE L1 6021 6157 -9 28 48 0 0 chrX 122409641 122409683 -54564457 + AT_rich Low_complexity Low_complexity 1 42 0 369 75 0 0 chrX 122410292 122410345 -54563795 + (CA)n Simple_repeat Simple_repeat 1 53 0 1510 261 33 15 chrX 122410884 122411279 -54562861 - MLT1E2 LTR MaLR 0 626 225 4343 225 91 92 chrX 122411307 122411804 -54562336 - L1M4 LINE L1 -3846 2798 2302 330 26 0 0 chrX 122411804 122411843 -54562297 + (CA)n Simple_repeat Simple_repeat 2 40 0 4343 225 91 92 chrX 122411843 122414055 -54560085 - L1M4 LINE L1 -4342 2302 182 660 275 18 18 chrX 122414287 122414509 -54559631 - L1MEc LINE L1 -3721 2359 2138 463 303 38 52 chrX 122414539 122414958 -54559182 - L1MEc LINE L1 -4158 2103 1691 3023 164 29 2 chrX 122415070 122415583 -54558557 - L1M4 LINE L1 -5940 1625 1099 638 175 33 0 chrX 122415580 122415700 -54558440 - L1M4 LINE L1 -7432 133 10 * 260 297 36 76 chrX 122415712 122415988 -54558152 - L1MEc LINE L1 -5363 707 443 314 298 101 58 chrX 122416311 122416519 -54557621 - L1MEc LINE L1 -5599 471 255 226 268 12 12 chrX 122416619 122416701 -54557439 - L1MEc LINE L1 -5921 149 68 310 307 64 7 chrX 122416828 122416968 -54557172 + L1ME4a LINE L1 5762 5909 -212 21 57 0 0 chrX 122417011 122417046 -54557094 + AT_rich Low_complexity Low_complexity 1 35 0 180 317 17 0 chrX 122417343 122417403 -54556737 - L2 LINE L2 -230 3042 2982 333 0 0 0 chrX 122417678 122417715 -54556425 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 62 0 0 chrX 122417977 122418025 -54556115 + AT_rich Low_complexity Low_complexity 1 48 0 425 302 17 0 chrX 122418571 122418687 -54555453 - L2 LINE L2 -5 3267 3150 675 308 40 16 chrX 122418856 122419103 -54555037 - MIR SINE MIR 0 262 10 360 0 0 0 chrX 122419226 122419266 -54554874 + (TG)n Simple_repeat Simple_repeat 1 40 0 947 173 48 87 chrX 122419557 122419788 -54554352 - MLT1A2 LTR MaLR -152 222 1 1475 238 53 5 chrX 122422019 122422393 -54551747 - MSTD LTR MaLR -4 392 1 21 36 0 0 chrX 122422579 122422607 -54551533 + AT_rich Low_complexity Low_complexity 1 28 0 810 142 0 82 chrX 122422695 122422878 -54551262 - L1MA9 LINE L1 -8 6304 6137 1821 198 54 38 chrX 122422909 122423548 -54550592 - L1MA9 LINE L1 -747 5399 4844 3569 257 58 59 chrX 122425226 122427326 -54546814 + L1PA11 LINE L1 10 2176 -4285 33323 91 67 6 chrX 122427333 122433124 -54541016 + L1PA6 LINE L1 11 6154 0 19303 156 14 2 chrX 122433116 122437400 -54536740 + L1PA11 LINE L1 2158 6487 -2 * 290 233 35 0 chrX 122437665 122437751 -54536389 - MIR SINE MIR -27 235 147 1227 265 88 17 chrX 122437752 122438141 -54535999 + MLT1F1 LTR MaLR 1 405 -137 313 292 0 14 chrX 122438141 122438213 -54535927 - MER81 DNA DNA 0 114 44 381 308 9 0 chrX 122438226 122438333 -54535807 - MER81 DNA DNA -5 109 2 755 207 7 0 chrX 122438334 122438474 -54535666 + MLT1F1 LTR MaLR 399 539 -3 223 308 46 46 chrX 122439410 122439540 -54534600 - MER5B DNA MER1_type 0 178 49 369 246 64 36 chrX 122440919 122441029 -54533111 + L2 LINE L2 3199 3311 -2 * 468 248 0 66 chrX 122441003 122441124 -54533016 - L2 LINE L2 -10 3303 3191 485 269 64 0 chrX 122441213 122441354 -54532786 + L2 LINE L2 3162 3311 -2 1074 192 67 8 chrX 122441540 122441780 -54532360 + L1MD1 LINE L1 5936 6189 -53 42690 33 21 1 chrX 122441780 122447812 -54526328 - L1PA2 LINE L1 0 6155 1 309 137 0 0 chrX 122447813 122447864 -54526276 + L1MD1 LINE L1 6172 6222 -20 5335 175 21 22 chrX 122447931 122449795 -54524345 + L1PA16 LINE L1 4307 6160 -6 22 0 0 0 chrX 122449808 122449830 -54524310 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chrX 122450965 122450996 -54523144 + AT_rich Low_complexity Low_complexity 1 31 0 479 294 117 30 chrX 122451140 122451337 -54522803 + MIR SINE MIR 49 262 0 221 283 0 0 chrX 122451337 122451390 -54522750 + (CCA)n Simple_repeat Simple_repeat 3 55 0 24 32 0 0 chrX 122451569 122451600 -54522540 + AT_rich Low_complexity Low_complexity 1 31 0 201 236 0 0 chrX 122451832 122451887 -54522253 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 22 0 0 0 chrX 122452431 122452453 -54521687 + AT_rich Low_complexity Low_complexity 1 22 0 16220 174 28 12 chrX 122453187 122456175 -54517965 + L1MA1 LINE L1 18 3054 -4511 13521 203 17 7 chrX 122456171 122459176 -54514964 + L1MA1 LINE L1 3581 6617 -948 * 2276 134 8 16 chrX 122459170 122459591 -54514549 - L1P5 LINE L1 -515 5636 5219 * 621 133 0 0 chrX 122459587 122459732 -54514408 - L1P LINE L1 -791 5355 5211 * 2840 143 7 0 chrX 122459746 122460269 -54513871 + L1PB2 LINE L1 5672 6197 0 6993 107 15 4 chrX 122460273 122461362 -54512778 + L1MA1 LINE L1 6617 7717 -4 23 0 0 0 chrX 122461362 122461385 -54512755 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chrX 122461425 122461460 -54512680 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chrX 122461709 122461734 -54512406 + AT_rich Low_complexity Low_complexity 1 25 0 7446 164 29 52 chrX 122461995 122463615 -54510525 + MER4B-int LTR ERV1 1310 4138 -2620 1190 136 0 0 chrX 122463737 122463928 -54510212 + AluY SINE Alu 119 309 -2 198 0 0 0 chrX 122463928 122463950 -54510190 + (TA)n Simple_repeat Simple_repeat 2 23 0 1369 109 9 0 chrX 122463951 122464161 -54509979 + L1MA1 LINE L1 6091 6302 0 189 0 0 0 chrX 122464959 122464980 -54509160 + (TA)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chrX 122465584 122465605 -54508535 + AT_rich Low_complexity Low_complexity 1 21 0 287 304 77 12 chrX 122465777 122465945 -54508195 + L1ME LINE L1 5681 5859 -262 703 297 55 30 chrX 122465958 122466194 -54507946 - MIR SINE MIR -2 260 19 312 268 62 10 chrX 122467015 122467112 -54507028 + L3 LINE CR1 1474 1575 -2 323 313 121 36 chrX 122467242 122467466 -54506674 - MIR SINE MIR -5 257 15 24 53 0 0 chrX 122468715 122468753 -54505387 + AT_rich Low_complexity Low_complexity 1 38 0 304 328 94 8 chrX 122468931 122469059 -54505081 + MIR SINE MIR 84 222 -40 2178 102 0 0 chrX 122469180 122469465 -54504675 + AluSq SINE Alu 13 297 -16 3724 231 27 18 chrX 122470427 122470651 -54503489 - L1MB7 LINE L1 -9 6175 5955 414 0 0 0 chrX 122470651 122470697 -54503443 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1886 80 72 8 chrX 122470697 122470961 -54503179 - AluY SINE Alu -30 281 1 3724 231 27 18 chrX 122470961 122471808 -54502332 - L1MB7 LINE L1 -228 5956 5091 885 218 123 18 chrX 122471840 122472198 -54501942 + MER57A LTR ERV1 48 403 0 2093 257 68 9 chrX 122472198 122472978 -54501162 - L1MB7 LINE L1 -1042 5104 4271 417 218 136 14 chrX 122473019 122473166 -54500974 + Charlie8 DNA MER1_type 325 489 -1928 266 304 19 130 chrX 122473260 122473467 -54500673 + MIR SINE MIR 29 212 -50 4437 57 5 3 chrX 122474473 122475049 -54499091 + L1PA7 LINE L1 5572 6148 -6 200 329 12 0 chrX 122475889 122475974 -54498166 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chrX 122476808 122476837 -54497303 + AT_rich Low_complexity Low_complexity 1 29 0 453 270 77 5 chrX 122477863 122478059 -54496081 + MLT1D LTR MaLR 27 236 -269 388 266 28 9 chrX 122478178 122478287 -54495853 + LTR25 LTR ERV1 248 358 -436 885 165 18 6 chrX 122478452 122478637 -54495503 + MER61E LTR ERV1 341 774 -20 1104 248 18 12 chrX 122478662 122478946 -54495194 + MLT1D LTR MaLR 245 505 0 21 0 0 0 chrX 122479022 122479043 -54495097 + AT_rich Low_complexity Low_complexity 1 21 0 435 308 49 7 chrX 122479458 122479601 -54494539 + MIR SINE MIR 96 244 -18 23 0 0 0 chrX 122479774 122479797 -54494343 + AT_rich Low_complexity Low_complexity 1 23 0 1002 237 21 91 chrX 122479829 122480201 -54493939 + L1ME1 LINE L1 5756 6101 -65 248 0 31 0 chrX 122480208 122480240 -54493900 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2097 98 3 3 chrX 122480244 122480529 -54493611 - AluSx SINE Alu -27 285 1 3186 120 49 18 chrX 122480529 122481081 -54493059 + L1PB2 LINE L1 5581 6149 -2 4534 218 46 6 chrX 122481096 122482054 -54492086 + L1MA4 LINE L1 15 1010 -4318 8276 186 46 10 chrX 122482054 122484719 -54489421 + L1MA4 LINE L1 3717 6482 0 495 175 0 0 chrX 122484725 122484805 -54489335 + L1M3f LINE L1 2880 2959 -3369 * 3343 178 17 0 chrX 122484803 122485445 -54488695 - L1P LINE L1 -1158 4988 4336 281 100 0 0 chrX 122485444 122485484 -54488656 + L1PA15 LINE L1 6117 6156 -9 * 486 269 19 37 chrX 122485552 122485768 -54488372 + L1M3f LINE L1 2993 3204 -3124 198 0 0 0 chrX 122486140 122486162 -54487978 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3485 45 0 0 chrX 122486162 122486585 -54487555 - L1PA5 LINE L1 -18 6136 5714 16701 38 5 0 chrX 122486585 122488978 -54485162 + L1PA5 LINE L1 3323 5722 -433 327 266 84 0 chrX 122488974 122489117 -54485023 + L1M3f LINE L1 3189 3343 -2985 * 414 289 8 16 chrX 122489225 122489346 -54484794 + FLAM_A SINE Alu 14 133 0 4136 259 63 26 chrX 122489359 122491828 -54482312 + L1ME2 LINE L1 3625 6175 -171 7710 132 3 1 chrX 122491851 122492990 -54481150 - HERVL-A2 LTR ERVL -4513 1141 1 1808 168 105 20 chrX 122492990 122493509 -54480631 - MLT2A2 LTR ERVL 0 554 1 533 259 142 5 chrX 122493510 122493643 -54480497 + HAL1 LINE L1 2072 2185 -322 272 26 0 26 chrX 122493643 122493681 -54480459 + (TG)n Simple_repeat Simple_repeat 1 37 0 533 259 142 5 chrX 122493681 122493692 -54480448 + HAL1 LINE L1 2185 2193 -314 1238 236 174 62 chrX 122493692 122493820 -54480320 - MLT1E2 LTR MaLR 0 626 514 2007 118 0 0 chrX 122493820 122494152 -54479988 + AluSc SINE Alu 1 332 0 1238 236 174 62 chrX 122494152 122494585 -54479555 - MLT1E2 LTR MaLR -112 514 1 533 259 142 5 chrX 122494585 122494644 -54479496 + HAL1 LINE L1 2193 2304 -203 429 255 239 11 chrX 122494797 122494985 -54479155 + MIR SINE MIR 20 250 -12 4803 120 24 27 chrX 122495504 122496285 -54477855 + MER4E LTR ERV1 1 779 0 206 360 70 30 chrX 122496378 122496478 -54477662 + L2 LINE L2 3160 3263 -9 32444 35 1 0 chrX 122499428 122504603 -54469537 + L1PA3 LINE L1 978 6155 0 335 268 65 49 chrX 122504619 122504644 -54469496 + L2 LINE L2 3139 3162 -110 5122 157 31 20 chrX 122504644 122505751 -54468389 - L1PA15 LINE L1 -1 6164 5070 2042 153 28 17 chrX 122505751 122506110 -54468030 + THE1B LTR MaLR 2 364 0 9395 126 51 12 chrX 122506111 122507631 -54466509 + THE1B-int LTR MaLR 2 1580 0 1944 189 28 0 chrX 122507631 122507985 -54466155 + THE1B LTR MaLR 1 364 0 5122 157 31 20 chrX 122507985 122508606 -54465534 - L1PA15 LINE L1 -1094 5071 4417 335 268 65 49 chrX 122508606 122508703 -54465437 + L2 LINE L2 3162 3263 -9 385 131 0 16 chrX 122509758 122509819 -54464321 - MER4A-int LTR ERV1 -6538 60 1 2156 138 15 67 chrX 122509822 122510342 -54463798 - MER4A LTR ERV1 0 664 101 2681 19 0 0 chrX 122510348 122510659 -54463481 - L1PA3 LINE L1 -1 6154 5844 9520 24 6 1 chrX 122510659 122511790 -54462350 + L1P LINE L1 3863 4999 -1147 561 118 11 11 chrX 122511790 122511883 -54462257 - MER4A LTR ERV1 -549 115 23 2526 114 0 11 chrX 122514066 122514434 -54459706 + THE1B LTR MaLR 1 364 0 1429 273 134 55 chrX 122515030 122516320 -54457820 - HAL1 LINE L1 0 2507 1116 346 221 25 6 chrX 122516351 122516514 -54457626 + (TA)n Simple_repeat Simple_repeat 1 166 0 189 74 0 0 chrX 122516523 122516550 -54457590 + (TG)n Simple_repeat Simple_repeat 2 28 0 331 328 73 5 chrX 122516632 122516824 -54457316 - HAL1 LINE L1 -1589 918 714 413 204 39 10 chrX 122516848 122516951 -54457189 - L1MD2 LINE L1 -11 6348 6243 299 309 62 0 chrX 122517457 122517554 -54456586 - MIR3 SINE MIR -21 187 85 225 278 46 46 chrX 122518329 122518437 -54455703 + L2 LINE L2 3137 3244 -28 186 260 0 41 chrX 122519372 122519445 -54454695 - L2 LINE L2 -76 3237 3168 2258 148 24 47 chrX 122520325 122520628 -54453512 + L1PA16 LINE L1 5705 5996 -170 1631 197 0 0 chrX 122520628 122520918 -54453222 + AluSx SINE Alu 1 290 -22 2258 148 24 47 chrX 122520918 122521066 -54453074 + L1PA16 LINE L1 5996 6146 -20 499 339 59 18 chrX 122521988 122522119 -54452021 - MLT1J2 LTR MaLR -119 331 207 197 83 28 0 chrX 122522119 122522155 -54451985 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 222 37 0 0 chrX 122522154 122522181 -54451959 + (GA)n Simple_repeat Simple_repeat 2 28 0 499 339 59 18 chrX 122522155 122522335 -54451805 - MLT1J2 LTR MaLR -243 207 34 772 172 30 94 chrX 122522639 122522842 -54451298 + LTR48B LTR ERV1 3 192 -452 330 192 51 13 chrX 122522954 122523032 -54451108 + LTR48 LTR ERV1 480 560 -227 488 132 209 0 chrX 122523032 122523123 -54451017 + LTR49 LTR ERV1 486 595 0 1604 201 0 3 chrX 122523571 122523874 -54450266 + AluJb SINE Alu 1 302 -10 1693 177 56 40 chrX 122524282 122524678 -54449462 + MER93a LTR ERV1 1 402 0 36 23 0 0 chrX 122525057 122525100 -54449040 + AT_rich Low_complexity Low_complexity 1 43 0 541 267 43 67 chrX 122525661 122525871 -54448269 + MIR SINE MIR 58 262 0 1444 209 68 9 chrX 122526923 122527262 -54446878 - MLT1A1 LTR MaLR -1 364 6 572 56 0 0 chrX 122527511 122527583 -54446557 + L1PA5 LINE L1 6074 6145 -9 183 42 0 0 chrX 122527594 122527618 -54446522 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 21 0 0 0 chrX 122527797 122527818 -54446322 + AT_rich Low_complexity Low_complexity 1 21 0 1630 176 9 38 chrX 122527960 122528301 -54445839 + THE1C LTR MaLR 1 331 -44 6614 199 41 33 chrX 122528301 122530252 -54443888 + LTR49-int LTR ERV1 424 5279 -1479 2548 138 66 25 chrX 122530253 122530724 -54443416 + LTR49-int LTR ERV1 5039 5528 -803 716 175 19 32 chrX 122530727 122530881 -54443259 + MER50 LTR ERV1 14 165 -569 473 222 167 0 chrX 122530900 122531026 -54443114 + MER50 LTR ERV1 117 263 -471 2434 72 0 0 chrX 122531026 122531331 -54442809 + AluY SINE Alu 1 305 -6 820 271 18 21 chrX 122531362 122531698 -54442442 + L1MC1 LINE L1 2736 3070 -3076 322 318 0 23 chrX 122531837 122531966 -54442174 + L1MC1 LINE L1 4795 4920 -1226 542 227 102 92 chrX 122532279 122532763 -54441377 + L1MC1 LINE L1 5349 5545 -619 5902 56 3 0 chrX 122532763 122533500 -54440640 + L1PA7 LINE L1 5415 6153 -1 1611 184 7 0 chrX 122533521 122533825 -54440315 + L1MC1 LINE L1 6022 6327 -6 22 0 0 0 chrX 122534689 122534711 -54439429 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chrX 122535274 122535298 -54438842 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 270 0 0 0 chrX 122535297 122535327 -54438813 + (CA)n Simple_repeat Simple_repeat 1 30 0 439 246 93 13 chrX 122535817 122536005 -54438135 - MIR SINE MIR -26 236 37 629 266 30 12 chrX 122536016 122536185 -54437955 + MIR SINE MIR 32 203 -59 1227 268 44 75 chrX 122537176 122537721 -54436419 + L1ME1 LINE L1 34 561 -5835 2522 244 42 64 chrX 122537765 122538520 -54435620 - MER21B LTR ERV1 -106 757 19 1581 265 73 29 chrX 122538534 122539232 -54434908 + L1ME1 LINE L1 560 1288 -5108 * 2063 234 107 8 chrX 122539221 122539943 -54434197 + L1ME1 LINE L1 4143 4935 -1280 245 197 33 0 chrX 122539949 122540010 -54434130 - L1MB2 LINE L1 -15 6156 6094 4159 196 16 35 chrX 122540010 122541864 -54432276 - L1MB3 LINE L1 -42 6198 4381 * 5835 169 24 17 chrX 122541851 122543659 -54430481 - L1MB3 LINE L1 -4379 1825 8 * 6090 248 14 36 chrX 122543626 122545303 -54428837 - L1PBa LINE L1 -5219 1644 6 7129 183 50 121 chrX 122545316 122545518 -54428622 - L1M4c LINE L1 -4094 2290 2075 243 0 0 0 chrX 122545518 122545545 -54428595 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7129 183 50 121 chrX 122545545 122547143 -54426997 - L1M4c LINE L1 -4309 2075 707 207 0 0 0 chrX 122547143 122547166 -54426974 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7129 183 50 121 chrX 122547166 122547813 -54426327 - L1M4c LINE L1 -5677 707 16 1889 256 75 22 chrX 122547820 122548258 -54425882 + L1ME1 LINE L1 4918 5331 -1072 1339 134 25 38 chrX 122548258 122548497 -54425643 - MER46A DNA MER2_type 0 236 1 1889 256 75 22 chrX 122548497 122549296 -54424844 + L1ME1 LINE L1 5331 6399 -4 2131 111 10 0 chrX 122549716 122550004 -54424136 - AluSc SINE Alu -18 291 1 883 235 9 18 chrX 122550038 122550255 -54423885 - MER20 DNA MER1_type -4 215 1 3007 53 0 0 chrX 122550656 122551031 -54423109 - L1PA4 LINE L1 -1049 5097 4723 7661 23 0 0 chrX 122551031 122552098 -54422042 + L1PA4 LINE L1 5088 6154 -1 182 379 8 48 chrX 122552102 122552226 -54421914 - MIR3 SINE MIR -5 203 85 4386 177 22 21 chrX 122552734 122553886 -54420254 - L1MA6 LINE L1 -675 5625 4463 3633 146 20 15 chrX 122553886 122554004 -54420136 + L1MA6 LINE L1 5647 5763 -537 2100 110 0 32 chrX 122554004 122554314 -54419826 - AluY SINE Alu -11 300 1 3633 146 20 15 chrX 122554314 122554843 -54419297 + L1MA6 LINE L1 5763 6300 0 1257 270 36 0 chrX 122555458 122555817 -54418323 - L1M4 LINE L1 -1776 4370 3999 250 250 125 27 chrX 122555846 122555958 -54418182 + MIR SINE MIR 128 250 -12 1141 296 137 8 chrX 122556047 122556449 -54417691 + L2 LINE L2 977 1430 -1884 431 356 55 39 chrX 122556487 122557029 -54417111 + L1MC5 LINE L1 4628 5177 -969 789 280 124 53 chrX 122557108 122558494 -54415646 + L1MC5 LINE L1 5266 6831 -1148 377 143 39 0 chrX 122558494 122558571 -54415569 + L1MA7 LINE L1 6206 6285 -6 789 280 124 53 chrX 122558571 122559019 -54415121 + L1MC5 LINE L1 6831 7246 -733 821 236 75 59 chrX 122559122 122559614 -54414526 + L1MC5 LINE L1 7262 7761 -200 1058 308 63 14 chrX 122559732 122560147 -54413993 + L2 LINE L2 1420 1854 -1460 4903 151 46 7 chrX 122560147 122561017 -54413123 + HSMAR2 DNA Mariner 10 913 -389 406 162 50 0 chrX 122561013 122561112 -54413028 + HSMAR2 DNA Mariner 1198 1301 -1 * 27 29 0 0 chrX 122561175 122561209 -54412931 + AT_rich Low_complexity Low_complexity 1 34 0 2269 84 0 7 chrX 122561268 122561564 -54412576 + AluY SINE Alu 1 294 -17 382 164 27 14 chrX 122562104 122562177 -54411963 + Charlie4 DNA MER1_type 112 185 -1776 643 272 7 14 chrX 122562198 122562345 -54411795 - LTR28 LTR ERV1 0 1020 875 1511 168 18 119 chrX 122562346 122562733 -54411407 - LTR28-int LTR ERV1 -6055 1036 689 2236 94 38 189 chrX 122562734 122563268 -54410872 + MLT2A2 LTR ERVL 1 453 0 3606 115 0 0 chrX 122563268 122563781 -54410359 + HERVL-A2 LTR ERVL 1 513 -5141 1662 219 81 51 chrX 122563775 122563880 -54410260 - LTR28-int LTR ERV1 -2894 194 422 * 2217 100 3 6 chrX 122563880 122564191 -54409949 - AluSp SINE Alu -3 310 1 1662 219 81 51 chrX 122564191 122564551 -54409589 - LTR28-int LTR ERV1 -2665 423 75 600 180 0 23 chrX 122564720 122564848 -54409292 - LTR28 LTR ERV1 0 1020 896 * 955 222 99 61 chrX 122564833 122565539 -54408601 - LTR28 LTR ERV1 -78 558 1 13633 26 19 0 chrX 122565548 122566844 -54407296 + Charlie4 DNA MER1_type 225 1560 -401 234 0 0 0 chrX 122566844 122566870 -54407270 + (TA)n Simple_repeat Simple_repeat 2 27 0 13633 26 19 0 chrX 122566870 122567236 -54406904 + Charlie4 DNA MER1_type 1560 1918 -43 1344 111 0 0 chrX 122567236 122567426 -54406714 - MER30B DNA MER1_type 0 190 1 228 104 0 42 chrX 122567499 122567547 -54406593 + LTR66 LTR ERVL 394 439 -171 318 235 0 82 chrX 122567547 122567645 -54406495 - L1MC4 LINE L1 -1339 6703 6614 629 281 0 41 chrX 122568604 122568800 -54405340 + MER5A DNA MER1_type 2 189 0 261 268 25 40 chrX 122568828 122568937 -54405203 + MIR SINE MIR 50 161 -65 233 313 47 47 chrX 122568975 122569125 -54405015 + MIR SINE MIR 107 256 -6 2679 26 0 3 chrX 122569358 122569667 -54404473 + AluY SINE Alu 1 308 -3 216 0 0 0 chrX 122569667 122569691 -54404449 + (TA)n Simple_repeat Simple_repeat 2 25 0 1369 109 9 0 chrX 122569692 122569902 -54404238 + L1MA1 LINE L1 6091 6302 0 225 0 0 0 chrX 122570699 122570724 -54403416 + (TA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chrX 122571330 122571351 -54402789 + AT_rich Low_complexity Low_complexity 1 21 0 703 297 55 30 chrX 122571704 122571940 -54402200 - MIR SINE MIR -2 260 19 312 268 62 10 chrX 122572763 122572860 -54401280 + L3 LINE CR1 1474 1575 -2 323 313 121 36 chrX 122572990 122573214 -54400926 - MIR SINE MIR -5 257 15 24 53 0 0 chrX 122574462 122574500 -54399640 + AT_rich Low_complexity Low_complexity 1 38 0 304 328 94 8 chrX 122574678 122574806 -54399334 + MIR SINE MIR 84 222 -40 2186 101 0 0 chrX 122574927 122575213 -54398927 + AluSq SINE Alu 13 298 -15 3702 232 27 18 chrX 122576175 122576399 -54397741 - L1MB7 LINE L1 -9 6175 5955 342 0 0 0 chrX 122576399 122576437 -54397703 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2031 81 37 7 chrX 122576437 122576710 -54397430 - AluY SINE Alu -30 281 1 3702 232 27 18 chrX 122576710 122577557 -54396583 - L1MB7 LINE L1 -228 5956 5091 904 213 124 19 chrX 122577589 122577947 -54396193 + MER57A LTR ERV1 48 403 0 2079 258 68 10 chrX 122577947 122578727 -54395413 - L1MB7 LINE L1 -1042 5104 4271 417 218 136 14 chrX 122578768 122578915 -54395225 + Charlie8 DNA MER1_type 325 489 -1928 260 303 19 135 chrX 122579009 122579217 -54394923 + MIR SINE MIR 29 212 -50 4437 57 5 3 chrX 122580223 122580799 -54393341 + L1PA7 LINE L1 5572 6148 -6 200 329 12 0 chrX 122581639 122581724 -54392416 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chrX 122582558 122582587 -54391553 + AT_rich Low_complexity Low_complexity 1 29 0 453 270 77 5 chrX 122583613 122583809 -54390331 + MLT1D LTR MaLR 27 236 -269 388 266 28 9 chrX 122583928 122584037 -54390103 + LTR25 LTR ERV1 248 358 -436 885 165 18 6 chrX 122584202 122584387 -54389753 + MER61E LTR ERV1 341 774 -20 1104 248 18 12 chrX 122584412 122584696 -54389444 + MLT1D LTR MaLR 245 505 0 21 0 0 0 chrX 122584772 122584793 -54389347 + AT_rich Low_complexity Low_complexity 1 21 0 435 308 49 7 chrX 122585208 122585351 -54388789 + MIR SINE MIR 96 244 -18 23 0 0 0 chrX 122585524 122585547 -54388593 + AT_rich Low_complexity Low_complexity 1 23 0 1002 237 21 91 chrX 122585579 122585951 -54388189 + L1ME1 LINE L1 5756 6101 -65 248 0 31 0 chrX 122585958 122585990 -54388150 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2072 102 3 3 chrX 122585994 122586279 -54387861 - AluSx SINE Alu -27 285 1 3167 121 49 18 chrX 122586279 122586831 -54387309 + L1PB2 LINE L1 5581 6149 -2 4518 219 46 6 chrX 122586846 122587804 -54386336 + L1MA4 LINE L1 15 1010 -4318 8228 186 46 11 chrX 122587804 122590473 -54383667 + L1MA4 LINE L1 3717 6482 0 495 175 0 0 chrX 122590479 122590559 -54383581 + L1M3f LINE L1 2880 2959 -3369 * 3362 176 17 0 chrX 122590557 122591199 -54382941 - L1P LINE L1 -1158 4988 4336 281 100 0 0 chrX 122591198 122591238 -54382902 + L1PA15 LINE L1 6117 6156 -9 * 486 269 19 37 chrX 122591306 122591522 -54382618 + L1M3f LINE L1 2993 3204 -3124 198 0 0 0 chrX 122591894 122591916 -54382224 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3499 43 0 0 chrX 122591916 122592339 -54381801 - L1PA5 LINE L1 -18 6136 5714 16658 39 5 0 chrX 122592339 122594732 -54379408 + L1PA5 LINE L1 3323 5722 -433 327 266 84 0 chrX 122594728 122594871 -54379269 + L1M3f LINE L1 3189 3343 -2985 * 404 289 8 16 chrX 122594979 122595100 -54379040 + FLAM_A SINE Alu 14 133 0 4173 259 64 26 chrX 122595113 122597579 -54376561 + L1ME2 LINE L1 3625 6175 -171 7698 133 3 1 chrX 122597602 122598741 -54375399 - HERVL-A2 LTR ERVL -4513 1141 1 1808 169 105 20 chrX 122598741 122599260 -54374880 - MLT2A2 LTR ERVL 0 554 1 533 259 142 5 chrX 122599261 122599394 -54374746 + HAL1 LINE L1 2072 2185 -322 380 20 0 20 chrX 122599394 122599444 -54374696 + (TG)n Simple_repeat Simple_repeat 1 49 0 533 259 142 5 chrX 122599444 122599455 -54374685 + HAL1 LINE L1 2185 2193 -314 1227 236 174 62 chrX 122599455 122599583 -54374557 - MLT1E2 LTR MaLR 0 626 514 2007 118 0 0 chrX 122599583 122599920 -54374220 + AluSc SINE Alu 1 337 0 1227 236 174 62 chrX 122599920 122600353 -54373787 - MLT1E2 LTR MaLR -112 514 1 533 259 142 5 chrX 122600353 122600412 -54373728 + HAL1 LINE L1 2193 2304 -203 429 255 239 11 chrX 122600565 122600753 -54373387 + MIR SINE MIR 20 250 -12 4787 122 24 27 chrX 122601272 122602053 -54372087 + MER4E LTR ERV1 1 779 0 206 360 70 30 chrX 122602146 122602246 -54371894 + L2 LINE L2 3160 3263 -9 34194 36 1 0 chrX 122605197 122610359 -54363781 + L1PA3 LINE L1 978 6142 -13 4976 177 23 9 chrX 122610411 122611517 -54362623 - L1PA15 LINE L1 -1 6164 5075 2036 144 33 22 chrX 122611517 122611877 -54362263 + THE1B LTR MaLR 1 364 0 9528 125 51 14 chrX 122611878 122613401 -54360739 + THE1B-int LTR MaLR 2 1580 0 1936 189 28 0 chrX 122613401 122613755 -54360385 + THE1B LTR MaLR 1 364 0 4976 177 23 9 chrX 122613755 122614376 -54359764 - L1PA15 LINE L1 -1089 5076 4417 311 287 85 11 chrX 122614379 122614473 -54359667 + L2 LINE L2 3163 3263 -9 367 131 0 16 chrX 122615528 122615589 -54358551 - MER4A-int LTR ERV1 -6538 60 1 2039 136 15 67 chrX 122615592 122616112 -54358028 - MER4A LTR ERV1 0 664 101 2723 16 0 0 chrX 122616118 122616429 -54357711 - L1PA3 LINE L1 -1 6154 5844 9066 26 6 1 chrX 122616429 122617560 -54356580 + L1P LINE L1 3863 4999 -1147 534 118 11 11 chrX 122617560 122617653 -54356487 - MER4A LTR ERV1 -549 115 23 11712 103 5 29 chrX 122618539 122620459 -54353681 + HERVH LTR ERV1 1114 2987 -4726 5436 108 8 2 chrX 122620453 122621304 -54352836 + HERVH LTR ERV1 3140 3995 -3718 * 7385 112 18 3 chrX 122621355 122622505 -54351635 + HERVH LTR ERV1 3995 5149 -2564 1393 132 0 0 chrX 122622506 122622726 -54351414 + HERVH LTR ERV1 5600 5819 -1894 2115 95 68 14 chrX 122622726 122623096 -54351044 + HERVH LTR ERV1 7324 7713 0 1886 73 11 6 chrX 122623096 122623461 -54350679 + LTR7 LTR ERV1 1 417 -33 3657 158 16 5 chrX 122623464 122624109 -54350031 + L1PB4 LINE L1 5502 6153 -3 314 363 26 5 chrX 122624130 122624197 -54349943 - MIR SINE MIR -13 249 185 1854 189 0 0 chrX 122624197 122624494 -54349646 + AluJb SINE Alu 1 297 -15 314 363 26 5 chrX 122624494 122624619 -54349521 - MIR SINE MIR -77 185 53 575 378 33 6 chrX 122627475 122627811 -54346329 - L3 LINE CR1 -3 1574 1230 2725 191 23 9 chrX 122627826 122628354 -54345786 + MLT2B3 LTR ERVL 1 535 -19 282 164 0 0 chrX 122628354 122628409 -54345731 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 269 0 29 0 chrX 122628410 122628444 -54345696 + MLT2B3 LTR ERVL 520 554 0 22 56 0 0 chrX 122628865 122628901 -54345239 + AT_rich Low_complexity Low_complexity 1 36 0 239 231 0 0 chrX 122629925 122629977 -54344163 + L2 LINE L2 3262 3313 0 26 0 0 0 chrX 122630442 122630468 -54343672 + AT_rich Low_complexity Low_complexity 1 26 0 303 266 54 54 chrX 122630719 122630997 -54343143 + L1MC5 LINE L1 7272 7549 -412 222 37 0 0 chrX 122631008 122631035 -54343105 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1294 221 18 11 chrX 122631038 122631318 -54342822 - AluJo SINE Alu -30 282 1 350 301 127 38 chrX 122631344 122631660 -54342480 + L1MC4 LINE L1 7696 8039 -3 222 250 0 0 chrX 122631679 122631727 -54342413 + (TA)n Simple_repeat Simple_repeat 2 49 0 282 303 34 11 chrX 122631728 122631817 -54342323 - L2 LINE L2 -14 3258 3168 1711 243 70 2 chrX 122631874 122632417 -54341723 - L1MB7 LINE L1 -10 6174 5595 8022 169 46 13 chrX 122632418 122633991 -54340149 + ERVL-B1 LTR ERVL 4131 5754 -10 563 183 40 0 chrX 122633997 122634122 -54340018 + MLT2B1 LTR ERVL 1 130 -390 3833 185 25 9 chrX 122634122 122634869 -54339271 - MER52A LTR ERV1 0 1755 997 860 190 21 97 chrX 122634872 122635165 -54338975 - MER52A LTR ERV1 -717 561 1 647 274 90 57 chrX 122635167 122635521 -54338619 + MLT2B3 LTR ERVL 129 494 -60 483 18 0 0 chrX 122635522 122635578 -54338562 + (TG)n Simple_repeat Simple_repeat 2 57 0 401 164 246 0 chrX 122635617 122635727 -54338413 + MLT2B1 LTR ERVL 384 520 0 327 325 13 40 chrX 122636026 122636073 -54338067 + MIR SINE MIR 2 49 -213 2047 154 120 5 chrX 122636073 122636457 -54337683 + MSTA LTR MaLR 1 428 0 327 325 13 40 chrX 122636457 122636560 -54337580 + MIR SINE MIR 49 148 -114 1354 229 40 13 chrX 122637215 122637517 -54336623 + AluJo SINE Alu 1 310 -2 31 0 0 0 chrX 122637777 122637808 -54336332 + AT_rich Low_complexity Low_complexity 1 31 0 437 271 74 81 chrX 122639596 122639880 -54334260 - L1MB7 LINE L1 -908 5238 4957 608 279 36 44 chrX 122639900 122640287 -54333853 + L1ME3 LINE L1 5272 5655 -515 487 238 116 6 chrX 122640312 122640493 -54333647 + L1ME3 LINE L1 5732 5932 -238 247 127 47 33 chrX 122640538 122640688 -54333452 + (TATAA)n Simple_repeat Simple_repeat 1 152 0 344 317 37 24 chrX 122640727 122640892 -54333248 + L1ME3 LINE L1 5999 6165 -5 24 53 0 0 chrX 122640892 122640930 -54333210 + AT_rich Low_complexity Low_complexity 1 38 0 39977 43 23 3 chrX 122640930 122646959 -54327181 - L1PA4 LINE L1 -3 6152 1 339 332 62 39 chrX 122647487 122647695 -54326445 - MIR SINE MIR -49 213 1 214 380 10 5 chrX 122647732 122647851 -54326289 + MIR SINE MIR 45 161 -47 198 289 0 0 chrX 122647931 122647969 -54326171 + L2 LINE L2 3254 3291 -22 317 298 149 37 chrX 122648028 122648243 -54325897 + MIR SINE MIR 17 255 -7 191 304 98 33 chrX 122648362 122648454 -54325686 - L2 LINE L2 -2 3311 3214 240 170 0 0 chrX 122648594 122648647 -54325493 + CT-rich Low_complexity Low_complexity 1 53 0 263 333 0 38 chrX 122648970 122649102 -54325038 - MIR SINE MIR -25 237 111 255 323 124 13 chrX 122649120 122649295 -54324845 + MIR3 SINE MIR 2 199 -9 21 57 0 0 chrX 122649661 122649696 -54324444 + AT_rich Low_complexity Low_complexity 1 35 0 327 303 156 0 chrX 122649816 122649938 -54324202 - MER5A DNA MER1_type 0 189 49 14997 214 41 15 chrX 122649938 122654168 -54319972 + L1 LINE L1 17 4622 -2943 2544 33 0 0 chrX 122654167 122654468 -54319672 + L1P2 LINE L1 5371 5671 -484 * 7188 35 15 0 chrX 122654466 122655339 -54318801 - L1P LINE L1 -1729 4417 3532 7228 43 4 2 chrX 122655341 122656777 -54317363 + L1PA4 LINE L1 4717 6154 -1 997 182 5 0 chrX 122656785 122656994 -54317146 + L1 LINE L1 5802 6011 -1554 2036 106 7 17 chrX 122656999 122657301 -54316839 + AluSc SINE Alu 1 299 -10 189 280 60 0 chrX 122660288 122660338 -54313802 + L2 LINE L2 3251 3303 -10 546 296 123 25 chrX 122660503 122660787 -54313353 - L2 LINE L2 -61 3252 2941 299 292 80 18 chrX 122660808 122660921 -54313219 - L2 LINE L2 -1096 2218 2099 455 340 7 7 chrX 122661723 122661870 -54312270 - MIR3 SINE MIR -35 173 27 612 318 12 45 chrX 122662248 122662493 -54311647 - MIR SINE MIR -23 239 3 23 0 0 0 chrX 122662499 122662522 -54311618 + AT_rich Low_complexity Low_complexity 1 23 0 258 193 0 0 chrX 122663943 122664000 -54310140 + CT-rich Low_complexity Low_complexity 2 58 0 185 371 106 0 chrX 122664208 122664340 -54309800 + MIR SINE MIR 46 191 -71 960 164 40 10 chrX 122664631 122664832 -54309308 - MER3 DNA MER1_type -1 208 2 321 26 0 0 chrX 122664932 122664970 -54309170 + (TG)n Simple_repeat Simple_repeat 2 39 0 2525 54 0 10 chrX 122665168 122665482 -54308658 - AluY SINE Alu 0 311 1 260 337 50 0 chrX 122665570 122665671 -54308469 - MIR3 SINE MIR -8 200 95 509 90 26 0 chrX 122665900 122665978 -54308162 + MADE1 DNA Mariner 1 80 0 746 208 30 15 chrX 122668101 122668298 -54305842 + Charlie4 DNA MER1_type 33 232 -1729 726 210 65 23 chrX 122668315 122668529 -54305611 + Charlie4 DNA MER1_type 1739 1961 0 215 243 29 29 chrX 122668662 122668732 -54305408 - MER5A DNA MER1_type -28 161 92 * 299 263 105 0 chrX 122668687 122668763 -54305377 + MER5A DNA MER1_type 63 146 -43 973 141 5 11 chrX 122668878 122669046 -54305094 + L1PA6 LINE L1 5896 6062 -92 * 13764 202 37 10 chrX 122669045 122669180 -54304960 + L1PB1 LINE L1 1890 2020 -4847 1791 162 0 0 chrX 122669180 122669458 -54304682 + AluSx SINE Alu 33 310 -2 2104 117 3 13 chrX 122669463 122669763 -54304377 + AluSx SINE Alu 1 297 -15 13764 202 37 10 chrX 122669763 122671822 -54302318 + L1PB1 LINE L1 2023 4024 -2843 2306 75 0 3 chrX 122671822 122672128 -54302012 + L1PA7 LINE L1 5842 6146 -8 13764 202 37 10 chrX 122672128 122672924 -54301216 + L1PB1 LINE L1 4024 4797 -2070 2004 122 0 7 chrX 122672924 122673247 -54300893 + AluSx SINE Alu 1 321 0 13764 202 37 10 chrX 122673247 122675075 -54299065 + L1PB1 LINE L1 4797 6867 0 1542 230 76 4 chrX 122675098 122675585 -54298555 - L1M4c LINE L1 -3900 2484 1963 670 233 0 13 chrX 122675600 122675759 -54298381 - L1M4c LINE L1 -4554 1830 1674 902 197 0 22 chrX 122675759 122675942 -54298198 + MLT1C LTR MaLR 289 467 0 6488 226 43 6 chrX 122675942 122677382 -54296758 - ERVL-C1 LTR ERVL -200 5564 4072 9475 242 39 15 chrX 122677405 122680433 -54293707 - ERVL-C1 LTR ERVL -1912 3852 635 192 234 70 95 chrX 122680433 122680591 -54293549 + L2 LINE L2 1894 2047 -1267 695 305 42 59 chrX 122680596 122681074 -54293066 - ERVL-C1 LTR ERVL -5293 471 2 1640 222 0 22 chrX 122681270 122681630 -54292510 - MLT2C1 LTR ERVL -45 352 1 22 70 0 0 chrX 122681645 122681688 -54292452 + AT_rich Low_complexity Low_complexity 1 43 0 1536 210 12 74 chrX 122681802 122682206 -54291934 + MLT1B LTR MaLR 1 379 -11 3012 237 78 31 chrX 122682229 122683190 -54290950 - L1MC4 LINE L1 -193 7849 6844 4688 143 18 3 chrX 122685528 122686288 -54287852 - Tigger1 DNA MER2_type 0 2418 1647 589 176 20 40 chrX 122686295 122686443 -54287697 - L1 LINE L1 -1082 5064 4920 3334 167 43 0 chrX 122686450 122687048 -54287092 - Tigger1 DNA MER2_type -1794 624 1 5870 115 6 11 chrX 122689237 122691047 -54283093 + L1PA13 LINE L1 4402 6158 -5 267 278 111 28 chrX 122691233 122691305 -54282835 - MIR SINE MIR -115 93 16 881 236 32 90 chrX 122692091 122692447 -54281693 - MLT1A1 LTR MaLR -33 342 1 358 317 37 45 chrX 122692788 122693167 -54280973 - L1 LINE L1 -1240 4906 4531 525 270 38 27 chrX 122693942 122694127 -54280013 - L2 LINE L2 -4 3309 3123 26 0 0 0 chrX 122694732 122694758 -54279382 + AT_rich Low_complexity Low_complexity 1 26 0 367 366 5 46 chrX 122694800 122695016 -54279124 + MIR SINE MIR 15 221 -41 207 203 0 0 chrX 122695056 122695125 -54279015 + (TAA)n Simple_repeat Simple_repeat 1 69 0 194 344 47 16 chrX 122695597 122695725 -54278415 - MIR SINE MIR -64 198 67 28241 131 24 58 chrX 122695997 122702355 -54271785 + L1PA6 LINE L1 17 6147 -7 24 0 0 0 chrX 122702357 122702381 -54271759 + AT_rich Low_complexity Low_complexity 1 24 0 198 71 0 0 chrX 122703296 122703324 -54270816 + (T)n Simple_repeat Simple_repeat 1 28 0 308 311 9 61 chrX 122703572 122703735 -54270405 - MIR SINE MIR -71 191 39 723 106 19 0 chrX 122703881 122703985 -54270155 - THE1C LTR MaLR 0 375 270 3787 135 13 35 chrX 122903985 122904665 -54069475 + L1MA2 LINE L1 5620 6284 -20 24 32 0 0 chrX 122905002 122905033 -54069107 + AT_rich Low_complexity Low_complexity 1 31 0 389 250 156 0 chrX 122905310 122905470 -54068670 + MER53 DNA DNA 1 185 -4 213 94 0 0 chrX 122905922 122905954 -54068186 + (TC)n Simple_repeat Simple_repeat 1 32 0 289 377 45 42 chrX 122906939 122907273 -54066867 + L2 LINE L2 252 586 -2728 2420 59 3 0 chrX 122907296 122907586 -54066554 - AluSp SINE Alu -22 291 1 1605 190 36 33 chrX 122907604 122908075 -54066065 + MER74A LTR ERVL 1 558 0 709 367 64 43 chrX 122908117 122909129 -54065011 + L2 LINE L2 677 1709 -1605 3626 168 9 5 chrX 122909129 122909852 -54064288 + L1MA5 LINE L1 5637 6362 0 291 319 153 31 chrX 122909874 122910128 -54064012 + L2 LINE L2 1719 2003 -1311 572 152 36 0 chrX 122910135 122910247 -54063893 + L1PA16 LINE L1 6042 6157 -9 233 218 32 16 chrX 122910259 122910382 -54063758 - L1MC3 LINE L1 -1139 6646 6589 230 64 21 0 chrX 122910388 122910435 -54063705 + LTR66 LTR ERVL 394 441 -169 342 328 8 0 chrX 122910620 122910751 -54063389 - MIR SINE MIR 0 262 131 1522 286 16 0 chrX 122911645 122912023 -54062117 - MER70A LTR ERVL 0 472 89 375 219 0 0 chrX 122912023 122912105 -54062035 + L1MA2 LINE L1 5979 6060 -244 739 268 6 0 chrX 122912119 122912276 -54061864 - MER70A LTR ERVL -314 158 1 22 0 0 0 chrX 122913992 122914014 -54060126 + AT_rich Low_complexity Low_complexity 1 22 0 1475 208 13 0 chrX 122914014 122914322 -54059818 - Tigger2a DNA MER2_type 0 444 133 349 178 93 84 chrX 122914348 122914455 -54059685 + Tigger2a DNA MER2_type 10 117 -317 1802 189 43 8 chrX 122914463 122914648 -54059492 + L1MA2 LINE L1 4597 4774 -1372 204 97 0 0 chrX 122914648 122914679 -54059461 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1802 189 43 8 chrX 122914679 122914890 -54059250 + L1MA2 LINE L1 4774 5007 -1139 844 119 244 0 chrX 122914890 122915050 -54059090 + MSTA LTR MaLR 1 199 -229 5658 134 15 4 chrX 122915053 122916700 -54057440 + L1PA10 LINE L1 4364 6023 -145 993 144 187 104 chrX 122916706 122916797 -54057343 + MSTA LTR MaLR 75 157 -271 333 0 0 0 chrX 122916797 122916834 -54057306 + (TC)n Simple_repeat Simple_repeat 1 37 0 993 144 187 104 chrX 122916834 122917020 -54057120 + MSTA LTR MaLR 157 428 0 6018 164 21 0 chrX 122917020 122918294 -54055846 + L1MA2 LINE L1 5003 6303 -1 27 0 0 0 chrX 122918297 122918324 -54055816 + AT_rich Low_complexity Low_complexity 1 27 0 334 263 22 50 chrX 122918511 122918690 -54055450 + L1MC5 LINE L1 7764 7937 -24 433 0 35 0 chrX 122918773 122918830 -54055310 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 2039 243 38 26 chrX 122918833 122919331 -54054809 - MLT2B3 LTR ERVL -50 504 1 294 196 0 0 chrX 122919471 122919568 -54054572 + (TA)n Simple_repeat Simple_repeat 1 97 0 285 29 0 0 chrX 122919569 122919603 -54054537 + (TG)n Simple_repeat Simple_repeat 2 35 0 228 87 0 0 chrX 122919603 122919649 -54054491 + LTR66 LTR ERVL 394 439 -171 * 240 64 0 0 chrX 122919612 122919659 -54054481 - LTR66 LTR ERVL -172 438 392 * 855 215 78 0 chrX 122919656 122919861 -54054279 + MER95 LTR ERV 25 245 -186 5553 166 13 5 chrX 122919862 122921188 -54052952 + L1PB1 LINE L1 4456 5801 -350 204 40 0 0 chrX 122921188 122921213 -54052927 + (TA)n Simple_repeat Simple_repeat 1 25 0 5553 166 13 5 chrX 122921213 122921567 -54052573 + L1PB1 LINE L1 5801 6150 -1 701 216 58 0 chrX 122921581 122921752 -54052388 + MER95 LTR ERV 241 421 -10 213 150 25 0 chrX 122921761 122921801 -54052339 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 471 60 0 0 chrX 122921803 122921870 -54052270 + (TC)n Simple_repeat Simple_repeat 2 68 0 191 309 16 121 chrX 122921879 122922135 -54052005 - L2 LINE L2 -49 3264 3036 2518 47 0 3 chrX 122922202 122922500 -54051640 + AluY SINE Alu 3 299 -12 1082 284 22 19 chrX 122923539 122923852 -54050288 + LTR16A LTR ERVL 107 420 -30 25 31 0 0 chrX 122923991 122924023 -54050117 + AT_rich Low_complexity Low_complexity 1 32 0 2059 98 0 14 chrX 122924200 122924518 -54049622 - AluSx SINE Alu 0 314 1 1424 167 40 4 chrX 122925329 122925580 -54048560 - MSTA LTR MaLR -2 426 167 213 176 39 0 chrX 122925584 122925635 -54048505 + CT-rich Low_complexity Low_complexity 4 56 0 30 45 0 0 chrX 122926316 122926360 -54047780 + AT_rich Low_complexity Low_complexity 1 44 0 2551 153 67 4 chrX 122926584 122927093 -54047047 + L1MA4A LINE L1 5752 6292 -11 276 30 0 0 chrX 122927157 122927190 -54046950 + (TG)n Simple_repeat Simple_repeat 2 34 0 366 91 0 0 chrX 122927316 122927382 -54046758 - L1MA3 LINE L1 -1 6304 6239 313 297 52 26 chrX 122927442 122927634 -54046506 + L1MB8 LINE L1 5972 6168 -10 246 302 0 0 chrX 122928665 122928728 -54045412 - L2 LINE L2 -13 3300 3238 757 298 98 40 chrX 122928734 122929204 -54044936 - MLT1J LTR MaLR -6 505 9 2298 153 52 5 chrX 122929481 122929886 -54044254 - MSTA LTR MaLR -2 426 3 6237 197 103 50 chrX 122929888 122931388 -54042752 - MSTA-int LTR MaLR 0 1580 1 2313 135 89 5 chrX 122931390 122931783 -54042357 - MSTA LTR MaLR -2 426 1 1738 193 15 62 chrX 122931803 122932270 -54041870 + MER65A LTR ERV1 1 445 0 6245 183 91 108 chrX 122932545 122934312 -54039828 + L1MA2 LINE L1 425 2161 -5404 11853 184 40 29 chrX 122934313 122934550 -54039590 + L1MA2 LINE L1 2665 2898 -4825 344 70 0 18 chrX 122934550 122934607 -54039533 + (TA)n Simple_repeat Simple_repeat 2 57 0 11853 184 40 29 chrX 122934607 122938433 -54035707 + L1MA2 LINE L1 2898 6818 -905 2263 151 33 28 chrX 122938433 122938858 -54035282 + MSTA LTR MaLR 1 427 -1 11853 184 40 29 chrX 122938858 122939774 -54034366 + L1MA2 LINE L1 6818 7722 -1 1447 223 49 19 chrX 122940508 122940876 -54033264 + MLT1B LTR MaLR 10 388 -2 208 239 0 0 chrX 122941664 122941710 -54032430 + GA-rich Low_complexity Low_complexity 2 47 0 27 0 0 0 chrX 122942421 122942448 -54031692 + AT_rich Low_complexity Low_complexity 1 27 0 190 397 40 40 chrX 122942554 122942680 -54031460 - MIR3 SINE MIR -79 129 4 362 282 30 94 chrX 122942743 122942945 -54031195 + MLT1L LTR MaLR 24 212 -403 30 0 0 0 chrX 122943849 122943879 -54030261 + AT_rich Low_complexity Low_complexity 1 30 0 5521 167 35 15 chrX 122944023 122945855 -54028285 - L1MA4A LINE L1 -3 6300 4451 297 346 7 44 chrX 122945871 122946007 -54028133 + MIR SINE MIR 57 187 -75 383 83 17 0 chrX 122946031 122946091 -54028049 + (TCTA)n Simple_repeat Simple_repeat 3 63 0 370 141 0 16 chrX 122946445 122946509 -54027631 - AluJ/FRAM SINE Alu -14 288 226 259 153 73 7 chrX 122946522 122946659 -54027481 + (TA)n Simple_repeat Simple_repeat 2 147 0 183 189 29 40 chrX 122946698 122946873 -54027267 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 433 141 64 15 chrX 122946889 122947366 -54026774 + (TA)n Simple_repeat Simple_repeat 1 500 0 220 120 92 7 chrX 122947383 122947525 -54026615 + (TA)n Simple_repeat Simple_repeat 1 154 0 259 101 65 50 chrX 122947534 122947673 -54026467 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 233 188 31 0 chrX 122947707 122947771 -54026369 + (TA)n Simple_repeat Simple_repeat 1 66 0 627 203 8 0 chrX 122947771 122947889 -54026251 - FLAM_C SINE Alu -14 119 1 1414 292 62 52 chrX 122948727 122949463 -54024677 + L1MEc LINE L1 35 778 -5618 476 210 20 0 chrX 122949488 122949588 -54024552 + L1MC2 LINE L1 6237 6338 -6 1894 261 87 34 chrX 122949649 122950191 -54023949 - L1MDa LINE L1 -2456 4084 3573 7601 25 0 0 chrX 122950191 122951286 -54022854 - L1PA4 LINE L1 -2 6153 5056 1894 261 87 34 chrX 122951286 122951920 -54022220 - L1MDa LINE L1 -2967 3573 2838 2286 87 7 0 chrX 122951920 122952218 -54021922 - AluSp SINE Alu -13 300 1 1894 261 87 34 chrX 122952218 122952607 -54021533 - L1MDa LINE L1 -3702 2838 2471 * 21768 181 20 21 chrX 122952597 122958086 -54016054 - L1PA11 LINE L1 0 7612 1295 2212 112 7 0 chrX 122958086 122958391 -54015749 - AluSp SINE Alu -6 307 1 21768 181 20 21 chrX 122958391 122959001 -54015139 - L1PA11 LINE L1 -6317 1295 686 446 283 90 29 chrX 122958997 122959443 -54014697 + L1MB8 LINE L1 2935 3407 -2739 * 180 111 0 0 chrX 122959458 122959485 -54014655 + (TA)n Simple_repeat Simple_repeat 1 27 0 1496 241 85 35 chrX 122959485 122961252 -54012888 + L1MB8 LINE L1 4238 6173 -5 265 308 113 15 chrX 122961358 122961491 -54012649 - MIR3 SINE MIR -15 193 48 207 100 0 0 chrX 122961503 122961533 -54012607 + (A)n Simple_repeat Simple_repeat 1 30 0 364 293 109 34 chrX 122961726 122961965 -54012175 - L2 LINE L2 -961 2353 2097 999 48 8 0 chrX 122962249 122962375 -54011765 + L1PA3 LINE L1 6024 6150 -5 31 0 0 0 chrX 122962988 122963019 -54011121 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chrX 122963736 122963773 -54010367 + AT_rich Low_complexity Low_complexity 1 37 0 252 143 43 0 chrX 122964057 122964127 -54010013 + (TA)n Simple_repeat Simple_repeat 2 74 0 1658 189 0 30 chrX 122964181 122964483 -54009657 - AluJo SINE Alu -19 293 1 2884 196 11 37 chrX 122965002 122965569 -54008571 - MLT2B3 LTR ERVL -2 552 1 8644 173 19 7 chrX 122965569 122967067 -54007073 - ERVL LTR ERVL -4 5760 4243 5881 198 20 5 chrX 122967072 122968155 -54005985 - ERVL LTR ERVL -1596 4168 3069 1615 184 3 10 chrX 122968155 122968449 -54005691 - MLT2B3 LTR ERVL -262 292 1 268 389 43 0 chrX 122969060 122969199 -54004941 - L2 LINE L2 -5 3308 3164 2871 7 0 0 chrX 122969204 122969514 -54004626 + AluY SINE Alu 1 310 -1 377 325 73 24 chrX 122969833 122970039 -54004101 + MIR SINE MIR 47 262 0 186 103 0 0 chrX 122970745 122970774 -54003366 + (ATG)n Simple_repeat Simple_repeat 2 30 0 889 178 13 13 chrX 122970858 122971010 -54003130 - AluJb SINE Alu -25 287 136 187 326 31 10 chrX 122971012 122971110 -54003030 - MIR SINE MIR -74 188 89 222 304 87 22 chrX 122971456 122971548 -54002592 + L2 LINE L2 3195 3292 -21 1438 247 19 8 chrX 122972025 122972394 -54001746 + MLT1A2 LTR MaLR 2 374 0 1157 183 9 0 chrX 122972716 122972940 -54001200 + L1PA16 LINE L1 5941 6166 0 415 253 17 0 chrX 122972957 122973131 -54001009 + (TA)n Simple_repeat Simple_repeat 1 177 0 354 295 60 7 chrX 122973131 122973332 -54000808 + MIR SINE MIR 6 259 -3 449 303 126 6 chrX 122973890 122974065 -54000075 + MIR SINE MIR 57 252 -10 219 69 0 0 chrX 122974065 122974094 -54000046 + (CA)n Simple_repeat Simple_repeat 2 30 0 275 312 119 0 chrX 122975895 122976004 -53998136 + L2 LINE L2 3184 3305 -8 2348 161 21 23 chrX 122976058 122976493 -53997647 - Tigger2a DNA MER2_type 0 434 1 230 327 65 0 chrX 122976548 122976655 -53997485 - L2 LINE L2 -4 3309 3196 382 269 108 0 chrX 122976773 122976903 -53997237 + MIR SINE MIR 116 259 -3 1664 229 78 18 chrX 122976911 122977348 -53996792 + MLT2B1 LTR ERVL 3 465 -55 546 82 41 0 chrX 122977357 122977454 -53996686 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 22 0 0 0 chrX 122977547 122977569 -53996571 + AT_rich Low_complexity Low_complexity 1 22 0 240 308 77 23 chrX 122977641 122977771 -53996369 - L2 LINE L2 -36 3277 3141 295 309 73 16 chrX 122977799 122977922 -53996218 - L2 LINE L2 -1 3312 3183 196 219 14 14 chrX 122978156 122978229 -53995911 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 186 43 0 0 chrX 122978500 122978523 -53995617 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 11226 214 32 31 chrX 122979212 122982282 -53991858 - L1 LINE L1 -743 6105 3031 2284 256 67 101 chrX 122982281 122983454 -53990686 - L1 LINE L1 -5482 1367 44 * 2437 247 40 32 chrX 122983466 122983776 -53990364 - L1ME1 LINE L1 -61 6105 5799 2174 119 0 0 chrX 122983776 122984070 -53990070 - AluSx SINE Alu -18 294 1 2437 247 40 32 chrX 122984070 122984660 -53989480 - L1ME1 LINE L1 -367 5799 5206 712 157 0 45 chrX 122984663 122984797 -53989343 - FRAM SINE Alu -8 168 41 478 236 19 13 chrX 122984804 122984961 -53989179 - L1ME1 LINE L1 -946 5200 5043 1135 229 24 12 chrX 122985315 122985564 -53988576 + L1MA2 LINE L1 14 265 -7300 4539 65 20 10 chrX 122985564 122986586 -53987554 + MER11A LTR ERVK 1 1266 0 18032 182 35 10 chrX 122986586 122987096 -53987044 + L1MA2 LINE L1 265 761 -6804 2117 124 75 73 chrX 122987096 122987451 -53986689 + MSTA LTR MaLR 1 359 -69 2046 146 0 23 chrX 122987451 122987760 -53986380 - AluSg SINE Alu -8 302 1 2117 124 75 73 chrX 122987760 122987831 -53986309 + MSTA LTR MaLR 359 428 0 18032 182 35 10 chrX 122987831 122991534 -53982606 + L1MA2 LINE L1 761 4583 -2982 265 246 0 0 chrX 122991572 122991633 -53982507 - L1MD3 LINE L1 -552 7443 7383 322 292 22 0 chrX 122991633 122991722 -53982418 - MLT1F1 LTR MaLR -476 91 1 329 151 0 19 chrX 122991726 122991779 -53982361 - L1MD3 LINE L1 -735 7260 7209 205 257 229 29 chrX 122992034 122992139 -53982001 + L2 LINE L2 3142 3267 -5 6674 24 0 0 chrX 122992364 122993149 -53980991 - L1PA3 LINE L1 -1631 4515 3731 7828 14 1 0 chrX 122993149 122994778 -53979362 + L1PA3 LINE L1 4525 6155 0 9183 173 19 29 chrX 122994778 122997951 -53976189 + L1MA2 LINE L1 4583 7723 0 282 174 0 0 chrX 122997972 122998018 -53976122 - MLT1I LTR MaLR -2 407 362 958 218 16 37 chrX 122998061 122998304 -53975836 - L1MA6 LINE L1 -236 6064 5827 * 1172 158 25 0 chrX 122998303 122998505 -53975635 + L1MA6 LINE L1 6071 6277 -23 1328 214 37 48 chrX 122998718 122998936 -53975204 - MER7A DNA MER2_type -2693 345 133 1877 143 3 3 chrX 122998936 122999223 -53974917 - AluSx SINE Alu -18 294 8 1328 214 37 48 chrX 122999223 122999355 -53974785 - MER7A DNA MER2_type -2905 133 1 14545 196 52 14 chrX 122999382 123005965 -53968175 - L1PB1 LINE L1 -1 6866 6 312 27 0 0 chrX 123006060 123006097 -53968043 + (TG)n Simple_repeat Simple_repeat 2 38 0 974 311 46 13 chrX 123006138 123006527 -53967613 - MLT1I LTR MaLR -3 406 5 264 348 17 9 chrX 123006530 123006645 -53967495 + L3 LINE CR1 1069 1184 -393 21 36 0 0 chrX 123007753 123007781 -53966359 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chrX 123012278 123012313 -53961827 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chrX 123012399 123012435 -53961705 + AT_rich Low_complexity Low_complexity 1 36 0 6591 146 63 7 chrX 123012800 123014687 -53959453 - L1MA2 LINE L1 0 6304 4313 427 275 28 7 chrX 123014957 123015099 -53959041 - MER112 DNA MER1_type 0 260 116 5074 137 23 3 chrX 123015107 123016581 -53957559 - L1PA13 LINE L1 -1 6162 4652 5792 188 126 19 chrX 123016581 123017930 -53956210 + L1PA13 LINE L1 3166 4658 -1488 646 333 0 6 chrX 123020425 123020602 -53953538 - MIR3 SINE MIR -10 198 23 194 278 222 11 chrX 123021951 123022041 -53952099 + MIR SINE MIR 34 142 -120 276 264 33 66 chrX 123022729 123022820 -53951320 - MIR3 SINE MIR -32 176 89 207 340 48 0 chrX 123023802 123023905 -53950235 + MIR SINE MIR 154 261 -1 1838 132 41 14 chrX 123024984 123025279 -53948861 + AluSx SINE Alu 6 308 -4 351 310 87 58 chrX 123025285 123026439 -53947701 - L1MEd LINE L1 -945 1545 274 207 335 114 18 chrX 123026486 123026653 -53947487 + L2 LINE L2 2171 2353 -961 529 308 91 29 chrX 123026958 123027253 -53946887 - Tigger8 DNA MER2_type -298 368 48 1520 264 84 33 chrX 123027253 123027825 -53946315 + LTR26 LTR ERV1 3 603 0 529 308 91 29 chrX 123027825 123027870 -53946270 - Tigger8 DNA MER2_type -618 48 7 255 381 0 46 chrX 123028609 123028782 -53945358 + L2 LINE L2 2914 3078 -194 377 313 31 16 chrX 123029322 123029450 -53944690 + L2 LINE L2 3184 3313 0 339 44 0 0 chrX 123029711 123029756 -53944384 + (TG)n Simple_repeat Simple_repeat 2 46 0 1901 146 0 7 chrX 123030177 123030550 -53943590 - AluJo SINE Alu 0 371 1 267 234 0 21 chrX 123030550 123030564 -53943576 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chrX 123030867 123030888 -53943252 + AT_rich Low_complexity Low_complexity 1 21 0 1323 126 70 0 chrX 123031237 123031452 -53942688 + MER30 DNA MER1_type 1 230 0 209 324 0 27 chrX 123031836 123031910 -53942230 + MIR SINE MIR 191 262 0 255 342 18 44 chrX 123033271 123033385 -53940755 - L2 LINE L2 -24 3248 3138 435 228 0 89 chrX 123034347 123034470 -53939670 + MER5A DNA MER1_type 1 112 -77 219 371 86 41 chrX 123034422 123034619 -53939521 + L2 LINE L2 2879 3084 -188 * 346 289 53 26 chrX 123035011 123035125 -53939015 - MIR SINE MIR -133 129 13 517 323 54 6 chrX 123035418 123035585 -53938555 + MER5A DNA MER1_type 12 186 -3 2865 168 40 6 chrX 123036932 123037455 -53936685 - MER87 LTR ERV1 0 541 1 352 274 11 0 chrX 123037685 123037780 -53936360 + MLT1H LTR MaLR 452 547 -2 264 301 0 14 chrX 123037780 123037853 -53936287 - MIR SINE MIR -122 140 69 1509 311 71 6 chrX 123037855 123038359 -53935781 + MLT1F LTR MaLR 1 537 -5 236 30 30 0 chrX 123039128 123039161 -53934979 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1551 47 0 0 chrX 123039161 123039351 -53934789 - L1PA4 LINE L1 -18 6137 5948 509 268 24 115 chrX 123039477 123039764 -53934376 + MIR SINE MIR 1 261 -1 29 60 0 0 chrX 123041090 123041140 -53933000 + AT_rich Low_complexity Low_complexity 1 50 0 975 272 12 8 chrX 123042921 123043175 -53930965 + L1P5 LINE L1 1 255 -5620 12809 141 21 4 chrX 123043178 123046993 -53927147 + L1PA10 LINE L1 2274 6157 -11 21 0 0 0 chrX 123046998 123047019 -53927121 + AT_rich Low_complexity Low_complexity 1 21 0 457 276 138 17 chrX 123047858 123048090 -53926050 - MIR SINE MIR 0 262 3 22 0 0 0 chrX 123048657 123048679 -53925461 + AT_rich Low_complexity Low_complexity 1 22 0 380 311 0 38 chrX 123049821 123049953 -53924187 + MER5B DNA MER1_type 4 130 -48 300 303 75 75 chrX 123050289 123050715 -53923425 - L1M4 LINE L1 -2537 3609 3184 483 238 85 53 chrX 123050736 123051077 -53923063 - L1M4 LINE L1 -3011 3135 2784 1737 318 48 24 chrX 123051175 123051450 -53922690 + L2 LINE L2 2304 2571 -742 957 184 8 73 chrX 123051450 123051684 -53922456 + MER20 DNA MER1_type 1 219 0 1737 318 48 24 chrX 123051684 123052397 -53921743 + L2 LINE L2 2571 3313 0 222 91 0 0 chrX 123053671 123053704 -53920436 + (GA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chrX 123054139 123054174 -53919966 + AT_rich Low_complexity Low_complexity 1 35 0 244 314 47 12 chrX 123054459 123054545 -53919595 + MIR SINE MIR 53 141 -67 11950 214 24 21 chrX 123055014 123060376 -53913764 + L1P5 LINE L1 232 6103 -363 478 28 0 69 chrX 123060408 123060480 -53913660 - L1PA8 LINE L1 -3 6169 6103 238 273 26 0 chrX 123060503 123060580 -53913560 + L1ME3A LINE L1 5745 5823 -341 285 293 70 25 chrX 123060794 123060951 -53913189 + L1ME3A LINE L1 5992 6155 -15 1230 308 92 21 chrX 123061008 123061628 -53912512 - L2 LINE L2 -1479 1835 1172 325 305 84 13 chrX 123061941 123062095 -53912045 + L2 LINE L2 2381 2545 -769 273 317 103 87 chrX 123062101 123062675 -53911465 - L2 LINE L2 -661 2653 2071 274 352 31 31 chrX 123062915 123063077 -53911063 + MIR3 SINE MIR 32 193 -15 9895 215 20 1 chrX 123063998 123066069 -53908071 - L1 LINE L1 -1589 5976 3844 522 0 0 0 chrX 123066069 123066127 -53908013 + (TA)n Simple_repeat Simple_repeat 2 59 0 9895 215 20 1 chrX 123066127 123066648 -53907492 - L1 LINE L1 -3721 3844 3334 10968 183 110 21 chrX 123066726 123070169 -53903971 + L1M1 LINE L1 16 4391 -3174 1570 202 31 48 chrX 123070175 123070655 -53903485 - L1 LINE L1 -1465 4681 4210 * 1827 254 32 50 chrX 123070651 123070843 -53903297 + L1MA9 LINE L1 5611 5805 -507 390 42 0 0 chrX 123070843 123070891 -53903249 + (CA)n Simple_repeat Simple_repeat 2 49 0 1827 254 32 50 chrX 123070891 123071374 -53902766 + L1MA9 LINE L1 5805 6274 -38 339 198 125 0 chrX 123071392 123071488 -53902652 + L1MA9 LINE L1 6167 6274 -38 191 235 78 0 chrX 123071534 123071585 -53902555 + L2 LINE L2 3171 3225 -88 27 29 0 0 chrX 123072948 123072982 -53901158 + AT_rich Low_complexity Low_complexity 1 34 0 260 325 25 25 chrX 123073114 123073234 -53900906 - L3b LINE CR1 -318 1265 1146 508 233 90 26 chrX 123074234 123074407 -53899733 + MIR SINE MIR 39 218 -44 6453 31 13 1 chrX 123074740 123075517 -53898623 - L1PA4 LINE L1 0 6155 5370 5324 81 8 20 chrX 123075520 123076285 -53897855 - HERV9 LTR ERV1 -979 7420 6665 * 48506 87 6 5 chrX 123076270 123082724 -53891416 - HERV9 LTR ERV1 -1872 6527 72 6114 74 3 51 chrX 123082724 123083636 -53890504 - pTR5 LTR ERV1 0 2606 1520 2954 218 45 25 chrX 123084075 123084826 -53889314 - L1MB5 LINE L1 -20 6652 5887 1711 264 24 51 chrX 123087933 123088432 -53885708 - L1M3e LINE L1 -6450 580 98 2367 49 0 7 chrX 123088432 123088718 -53885422 + AluY SINE Alu 1 284 -27 1711 264 24 51 chrX 123088718 123088808 -53885332 - L1M3e LINE L1 -6932 98 7 1729 281 59 11 chrX 123088839 123090266 -53883874 - L1MB5 LINE L1 -2874 3770 2272 481 246 80 57 chrX 123090313 123090488 -53883652 - MLT1A2 LTR MaLR -5 369 191 560 251 41 62 chrX 123090533 123090728 -53883412 - MLT1A2 LTR MaLR -183 191 1 3500 255 58 49 chrX 123090729 123091292 -53882848 - L1MB5 LINE L1 -4692 1954 1397 2419 57 3 7 chrX 123091292 123091592 -53882548 + AluY SINE Alu 1 299 -12 3500 255 58 49 chrX 123091592 123091851 -53882289 - L1MB5 LINE L1 -5249 1397 1142 234 0 0 0 chrX 123091851 123091877 -53882263 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 3500 255 58 49 chrX 123091877 123092641 -53881499 - L1MB5 LINE L1 -5504 1142 380 2087 103 23 7 chrX 123092641 123092943 -53881197 + AluSq SINE Alu 1 307 -6 3500 255 58 49 chrX 123092943 123093326 -53880814 - L1MB5 LINE L1 -6266 380 2 7095 219 15 41 chrX 123094330 123096201 -53877939 + L1PA15 LINE L1 2788 4706 -1459 1249 153 47 72 chrX 123096201 123096436 -53877704 + AluSq SINE Alu 5 233 -80 7095 219 15 41 chrX 123096436 123096811 -53877329 + L1PA15 LINE L1 4706 5089 -1076 2343 89 3 0 chrX 123096811 123097113 -53877027 + AluY SINE Alu 1 303 -8 7095 219 15 41 chrX 123097113 123097692 -53876448 + L1PA15 LINE L1 5089 5600 -565 1932 163 0 7 chrX 123097692 123097999 -53876141 + AluSx SINE Alu 1 305 -7 7095 219 15 41 chrX 123097999 123098550 -53875590 + L1PA15 LINE L1 5600 6164 -1 229 360 0 11 chrX 123098604 123098693 -53875447 + MIR SINE MIR 10 97 -165 1950 183 0 21 chrX 123098693 123099071 -53875069 - L1PB3 LINE L1 -2 6854 6485 199 276 11 17 chrX 123099092 123099266 -53874874 + (TA)n Simple_repeat Simple_repeat 1 173 0 11360 242 49 14 chrX 123099266 123105102 -53869038 - L1PB3 LINE L1 -363 6493 647 287 308 33 8 chrX 123105432 123105552 -53868588 - L1PB3 LINE L1 -6718 131 9 * 575 362 42 18 chrX 123105548 123105882 -53868258 - L1PBa LINE L1 -5419 1443 1184 186 71 0 0 chrX 123105882 123105910 -53868230 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 575 362 42 18 chrX 123105910 123106253 -53867887 - L1PBa LINE L1 -5678 1184 851 1811 117 0 0 chrX 123106287 123106534 -53867606 + THE1A LTR MaLR 109 355 0 6354 120 0 14 chrX 123106534 123107464 -53866676 + THE1A-int LTR MaLR 1 917 -663 373 315 41 16 chrX 123108737 123108941 -53865199 + L1ME LINE L1 816 1054 -5095 1889 176 104 5 chrX 123109034 123109420 -53864720 + MSTA LTR MaLR 5 428 0 3002 188 14 1 chrX 123109420 123110013 -53864127 + MSTA-int LTR MaLR 1 561 -1019 42813 33 22 1 chrX 123110025 123116050 -53858090 - L1HS LINE L1 0 6155 2 660 13 0 0 chrX 123116050 123116128 -53858012 - L1P1 LINE L1 -368 5787 5710 * 938 41 16 0 chrX 123116126 123116247 -53857893 + L1P1 LINE L1 5355 5477 -678 * 5206 181 57 16 chrX 123116233 123117224 -53856916 + MSTA-int LTR MaLR 550 1580 0 845 236 59 31 chrX 123117211 123117226 -53856914 + L1MC3 LINE L1 7490 7503 -282 * 1881 169 148 5 chrX 123117226 123117599 -53856541 + MSTA LTR MaLR 3 428 0 845 236 59 31 chrX 123117599 123117871 -53856269 + L1MC3 LINE L1 7503 7785 0 886 228 29 18 chrX 123119035 123119307 -53854833 + L1M1 LINE L1 3344 3618 -3947 687 125 31 25 chrX 123119308 123119468 -53854672 + GA-rich Low_complexity Low_complexity 3 163 0 2337 226 8 2 chrX 123119478 123120010 -53854130 + L1M1 LINE L1 3643 4177 -3388 1876 159 3 3 chrX 123120031 123120327 -53853813 + AluSq SINE Alu 1 296 -17 790 313 80 34 chrX 123120338 123121168 -53852972 + L1ME3A LINE L1 5294 6161 -9 3073 162 10 8 chrX 123121490 123121990 -53852150 - MER61D LTR ERV1 0 501 1 6504 178 49 46 chrX 123121993 123123069 -53851071 - MER61D-int LTR ERV1 -2 6994 5923 1471 108 11 115 chrX 123123069 123123329 -53850811 + AluSq SINE Alu 1 233 -80 3503 205 25 63 chrX 123123329 123124337 -53849803 - LTR5 LTR ERVK 0 969 1 487 143 0 0 chrX 123124337 123124414 -53849726 + AluS SINE Alu 228 304 -8 6504 178 49 46 chrX 123124414 123128102 -53846038 - MER61D-int LTR ERV1 -1072 5924 610 1889 147 0 7 chrX 123128103 123128389 -53845751 - MER61D LTR ERV1 -217 284 1 22 88 0 0 chrX 123128509 123128566 -53845574 + AT_rich Low_complexity Low_complexity 1 57 0 27 0 0 0 chrX 123128632 123128659 -53845481 + AT_rich Low_complexity Low_complexity 1 27 0 281 367 142 29 chrX 123129669 123129944 -53844196 - L2 LINE L2 -430 2884 2579 259 266 114 0 chrX 123130073 123130152 -53843988 + MIR SINE MIR 57 144 -118 219 246 0 0 chrX 123130155 123130216 -53843924 + (TA)n Simple_repeat Simple_repeat 2 62 0 284 343 0 19 chrX 123130806 123130914 -53843226 + MIR SINE MIR 63 168 -94 3848 245 19 40 chrX 123130927 123131944 -53842196 + L1 LINE L1 22 1016 -6549 4073 209 31 33 chrX 123131951 123133095 -53841045 + L1 LINE L1 4000 5141 -2424 7379 223 48 8 chrX 123133110 123136516 -53837624 - L1MA1 LINE L1 -5 6297 2746 3039 182 29 28 chrX 123136522 123137204 -53836936 + L1P LINE L1 3225 3907 -2239 12818 181 30 17 chrX 123137221 123139773 -53834367 + L1MA3 LINE L1 2993 5637 -2087 799 28 37 0 chrX 123139773 123139881 -53834259 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 12818 181 30 17 chrX 123139881 123141933 -53832207 + L1MA3 LINE L1 5637 7660 -64 259 235 0 12 chrX 123141937 123141979 -53832161 + A-rich Low_complexity Low_complexity 1 43 -37 702 161 0 8 chrX 123141979 123142109 -53832031 + L1MA3 LINE L1 6177 6305 0 259 235 0 12 chrX 123142109 123142147 -53831993 + A-rich Low_complexity Low_complexity 43 80 0 250 285 111 14 chrX 123142282 123142489 -53831651 - L1M4 LINE L1 -1320 4826 4600 422 261 26 17 chrX 123142572 123142687 -53831453 + L2 LINE L2 3190 3305 -8 327 264 87 86 chrX 123142707 123142783 -53831357 - L1M4 LINE L1 -1567 4579 4505 1332 215 76 25 chrX 123142783 123143151 -53830989 - MLT1B LTR MaLR 0 390 4 327 264 87 86 chrX 123143151 123143829 -53830311 - L1M4 LINE L1 -1641 4505 3822 696 275 19 24 chrX 123144871 123145078 -53829062 - MIR SINE MIR -14 248 43 193 171 0 0 chrX 123145146 123145181 -53828959 - L2 LINE L2 0 3313 3279 194 105 26 0 chrX 123145330 123145368 -53828772 + T-rich Low_complexity Low_complexity 2 40 0 7586 26 0 0 chrX 123145497 123146601 -53827539 - L1PA3 LINE L1 0 6155 5050 6076 25 0 0 chrX 123146601 123147324 -53826816 + L1PA3 LINE L1 4328 5050 -1096 288 330 41 0 chrX 123147360 123147457 -53826683 - MIR SINE MIR -81 181 81 1568 159 56 19 chrX 123147463 123147784 -53826356 + MER46B DNA MER2_type 1 208 -28 182 370 65 0 chrX 123148317 123148409 -53825731 + MIR SINE MIR 47 144 -64 2526 114 0 11 chrX 123150581 123150949 -53823191 + THE1B LTR MaLR 1 364 0 1462 273 134 55 chrX 123151545 123152835 -53821305 - HAL1 LINE L1 0 2507 1116 364 218 24 6 chrX 123152866 123153031 -53821109 + (TA)n Simple_repeat Simple_repeat 1 168 0 189 74 0 0 chrX 123153040 123153067 -53821073 + (TG)n Simple_repeat Simple_repeat 2 28 0 331 328 73 5 chrX 123153149 123153341 -53820799 - HAL1 LINE L1 -1589 918 714 413 204 39 10 chrX 123153365 123153468 -53820672 - L1MD2 LINE L1 -11 6348 6243 299 309 62 0 chrX 123153974 123154071 -53820069 - MIR3 SINE MIR -21 187 85 225 278 46 46 chrX 123154846 123154954 -53819186 + L2 LINE L2 3137 3244 -28 186 260 0 41 chrX 123155889 123155962 -53818178 - L2 LINE L2 -76 3237 3168 2250 151 24 42 chrX 123156842 123157143 -53816997 + L1PA16 LINE L1 5705 5997 -169 1617 192 0 3 chrX 123157143 123157434 -53816706 + AluSx SINE Alu 1 290 -22 2250 151 24 42 chrX 123157434 123157582 -53816558 + L1PA16 LINE L1 5997 6146 -20 512 336 59 18 chrX 123158504 123158635 -53815505 - MLT1J2 LTR MaLR -119 331 207 197 83 28 0 chrX 123158635 123158671 -53815469 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 222 37 0 0 chrX 123158670 123158697 -53815443 + (GA)n Simple_repeat Simple_repeat 2 28 0 512 336 59 18 chrX 123158671 123158851 -53815289 - MLT1J2 LTR MaLR -243 207 34 772 172 30 94 chrX 123159155 123159358 -53814782 + LTR48B LTR ERV1 3 192 -452 330 192 51 13 chrX 123159470 123159548 -53814592 + LTR48 LTR ERV1 480 560 -227 488 132 209 0 chrX 123159548 123159639 -53814501 + LTR49 LTR ERV1 486 595 0 1604 201 0 3 chrX 123160087 123160390 -53813750 + AluJb SINE Alu 1 302 -10 22 35 0 0 chrX 123161305 123161334 -53812806 + AT_rich Low_complexity Low_complexity 1 29 0 1395 251 61 2 chrX 123162179 123162574 -53811566 + L1MB7 LINE L1 5757 6174 -10 282 303 34 11 chrX 123162631 123162720 -53811420 + L2 LINE L2 3168 3258 -14 222 250 0 0 chrX 123162721 123162769 -53811371 + (TA)n Simple_repeat Simple_repeat 2 49 0 487 286 122 63 chrX 123162788 123163132 -53811008 - L1MC4 LINE L1 -3 8039 7717 1236 223 18 11 chrX 123163132 123163410 -53810730 + AluJo SINE Alu 3 282 -30 258 32 0 0 chrX 123163413 123163444 -53810696 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 487 286 122 63 chrX 123163444 123163522 -53810618 - L1MC4 LINE L1 -326 7716 7588 561 118 11 11 chrX 123163912 123164005 -53810135 + MER4A LTR ERV1 23 115 -549 5318 35 0 1 chrX 123164005 123164656 -53809484 - L1P LINE L1 -1147 4999 4350 1736 162 0 10 chrX 123164757 123165059 -53809081 + AluY SINE Alu 13 311 0 321 26 0 0 chrX 123165266 123165304 -53808836 + (CA)n Simple_repeat Simple_repeat 2 39 0 960 164 40 10 chrX 123165404 123165605 -53808535 + MER3 DNA MER1_type 2 208 -1 185 371 106 0 chrX 123165869 123166001 -53808139 - MIR SINE MIR -71 191 46 258 193 0 0 chrX 123166209 123166266 -53807874 + GA-rich Low_complexity Low_complexity 2 58 0 251 296 78 35 chrX 123167443 123167558 -53806582 - L2 LINE L2 -1096 2218 2099 455 340 7 7 chrX 123168360 123168507 -53805633 - MIR3 SINE MIR -35 173 27 612 318 12 45 chrX 123168885 123169130 -53805010 - MIR SINE MIR -23 239 3 23 0 0 0 chrX 123169136 123169159 -53804981 + AT_rich Low_complexity Low_complexity 1 23 0 1444 209 68 9 chrX 123169608 123169947 -53804193 - MLT1A1 LTR MaLR -1 364 6 572 56 0 0 chrX 123170196 123170268 -53803872 + L1PA5 LINE L1 6074 6145 -9 183 42 0 0 chrX 123170279 123170303 -53803837 + (TAAAAA)n Simple_repeat Simple_repeat 6 29 0 21 0 0 0 chrX 123170482 123170503 -53803637 + AT_rich Low_complexity Low_complexity 1 21 0 1931 159 16 39 chrX 123170645 123171029 -53803111 + THE1C LTR MaLR 1 375 0 319 305 9 61 chrX 123171175 123171338 -53802802 + MIR SINE MIR 39 191 -71 198 71 0 0 chrX 123171586 123171614 -53802526 + (A)n Simple_repeat Simple_repeat 1 28 0 21385 108 8 9 chrX 123172445 123175853 -53798287 - L1P3 LINE L1 -692 5462 2059 12238 102 5 33 chrX 123176142 123178078 -53796062 + HERVH LTR ERV1 1114 2995 -4718 7740 119 16 3 chrX 123178057 123180109 -53794031 + HERVH LTR ERV1 3140 5286 -1805 * 1462 132 0 0 chrX 123180110 123180330 -53793810 + HERVH LTR ERV1 5600 5819 -1894 2230 95 68 14 chrX 123180330 123180700 -53793440 + HERVH LTR ERV1 7324 7713 0 1965 73 11 6 chrX 123180700 123181065 -53793075 + LTR7 LTR ERV1 1 417 -33 1841 141 20 7 chrX 123181068 123181374 -53792766 + L1P5 LINE L1 5502 5811 -345 23223 33 2 0 chrX 123181475 123185101 -53789039 + L1PA3 LINE L1 2526 6155 0 5216 179 23 10 chrX 123185141 123186248 -53787892 - L1PA15 LINE L1 -1 6164 5074 2013 159 28 17 chrX 123186248 123186607 -53787533 + THE1B LTR MaLR 2 364 0 9415 125 51 12 chrX 123186608 123188128 -53786012 + THE1B-int LTR MaLR 2 1580 0 1944 189 28 0 chrX 123188128 123188482 -53785658 + THE1B LTR MaLR 1 364 0 5216 179 23 10 chrX 123188482 123189103 -53785037 - L1PA15 LINE L1 -1090 5075 4417 303 287 85 11 chrX 123189106 123189200 -53784940 + L2 LINE L2 3163 3263 -9 385 131 0 16 chrX 123190255 123190316 -53783824 - MER4A-int LTR ERV1 -6538 60 1 2156 138 15 67 chrX 123190319 123190839 -53783301 - MER4A LTR ERV1 0 664 101 2226 23 0 0 chrX 123190845 123191106 -53783034 - L1PA3 LINE L1 -1 6154 5894 4030 36 0 6 chrX 123191213 123191706 -53782434 + L1PA4 LINE L1 5663 6152 -3 24 53 0 0 chrX 123191706 123191744 -53782396 + AT_rich Low_complexity Low_complexity 1 38 0 252 292 35 24 chrX 123191744 123191909 -53782231 - L1ME3A LINE L1 -5 6165 5999 213 132 59 26 chrX 123191948 123192100 -53782040 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 541 245 156 5 chrX 123192114 123192326 -53781814 - L1ME3A LINE L1 -195 5975 5732 744 273 35 57 chrX 123192351 123192757 -53781383 - L1ME3A LINE L1 -515 5655 5259 285 271 74 81 chrX 123192758 123193042 -53781098 + L1ME3A LINE L1 4957 5238 -908 30 0 0 0 chrX 123194829 123194859 -53779281 + AT_rich Low_complexity Low_complexity 1 30 0 1283 229 40 13 chrX 123195119 123195421 -53778719 - AluJo SINE Alu -2 310 1 340 325 13 40 chrX 123196076 123196179 -53777961 - MIR SINE MIR -114 148 49 2018 154 120 5 chrX 123196179 123196563 -53777577 - MSTA LTR MaLR 0 428 1 340 325 13 40 chrX 123196563 123196610 -53777530 - MIR SINE MIR -213 49 2 437 175 225 8 chrX 123196909 123197029 -53777111 - MLT2B1 LTR ERVL 0 520 375 483 18 0 0 chrX 123197058 123197114 -53777026 + (CA)n Simple_repeat Simple_repeat 2 57 0 745 277 90 57 chrX 123197115 123197469 -53776671 - MLT2B3 LTR ERVL -60 494 129 4035 190 32 31 chrX 123197471 123198514 -53775626 + MER52A LTR ERV1 1 1755 0 602 183 40 0 chrX 123198514 123198639 -53775501 - MLT2B1 LTR ERVL -390 130 1 1217 151 59 8 chrX 123198645 123198883 -53775257 - ERVL-B1 LTR ERVL -10 5754 5505 10648 142 26 41 chrX 123198983 123201102 -53773038 - L1P3 LINE L1 -4298 2163 15 206 336 47 16 chrX 123201374 123201502 -53772638 + MIR SINE MIR 67 198 -64 207 203 0 0 chrX 123201974 123202043 -53772097 + (TTA)n Simple_repeat Simple_repeat 1 69 0 367 366 5 46 chrX 123202083 123202299 -53771841 - MIR SINE MIR -41 221 15 26 0 0 0 chrX 123202341 123202367 -53771773 + AT_rich Low_complexity Low_complexity 1 26 0 525 270 38 27 chrX 123202972 123203157 -53770983 + L2 LINE L2 3123 3309 -4 356 315 38 47 chrX 123203932 123204357 -53769783 + L1M4 LINE L1 4531 4951 -1195 881 236 32 90 chrX 123204652 123205008 -53769132 + MLT1A1 LTR MaLR 1 342 -33 267 278 111 28 chrX 123205794 123205866 -53768274 + MIR SINE MIR 16 93 -115 6002 156 7 29 chrX 123206052 123207855 -53766285 - L1PA13 LINE L1 -5 6158 4402 277 284 45 0 chrX 123208049 123208137 -53766003 - L1MC5 LINE L1 -600 7361 7270 26 0 0 0 chrX 123208386 123208412 -53765728 + AT_rich Low_complexity Low_complexity 1 26 0 249 231 0 0 chrX 123208877 123208929 -53765211 - L2 LINE L2 0 3313 3262 22 56 0 0 chrX 123209953 123209989 -53764151 + AT_rich Low_complexity Low_complexity 1 36 0 269 104 71 0 chrX 123210410 123210468 -53763672 - MLT2B3 LTR ERVL 0 554 458 186 43 0 0 chrX 123210477 123210500 -53763640 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 2879 191 26 13 chrX 123210500 123211028 -53763112 - MLT2B3 LTR ERVL -19 535 1 601 378 33 6 chrX 123211043 123211379 -53762761 + L3 LINE CR1 1230 1574 -3 350 363 26 5 chrX 123214235 123214360 -53759780 + MIR SINE MIR 53 185 -77 1793 189 0 0 chrX 123214360 123214657 -53759483 - AluJb SINE Alu -15 297 1 350 363 26 5 chrX 123214657 123214724 -53759416 + MIR SINE MIR 185 249 -13 850 186 0 6 chrX 123214745 123214901 -53759239 - L1PA16 LINE L1 -16 6150 5996 2293 207 12 74 chrX 123215012 123215698 -53758442 - L1P LINE L1 -1102 5044 4402 3334 167 43 0 chrX 123217887 123218485 -53755655 + Tigger1 DNA MER2_type 1 624 -1794 589 176 20 40 chrX 123218492 123218640 -53755500 + L1 LINE L1 4920 5064 -1082 4688 143 18 3 chrX 123218647 123219407 -53754733 + Tigger1 DNA MER2_type 1647 2418 0 3012 237 78 31 chrX 123221848 123222809 -53751331 + L1MC4 LINE L1 6844 7849 -193 1536 210 12 74 chrX 123222832 123223236 -53750904 - MLT1B LTR MaLR -11 379 1 22 70 0 0 chrX 123223350 123223393 -53750747 + AT_rich Low_complexity Low_complexity 1 43 0 1640 222 0 22 chrX 123223408 123223768 -53750372 + MLT2C1 LTR ERVL 1 352 -45 367 281 45 31 chrX 123223963 123224147 -53749993 + ERVL LTR ERVL 1 188 -5466 540 287 45 49 chrX 123224302 123224546 -53749594 + ERVL LTR ERVL 229 471 -5293 192 234 70 95 chrX 123224551 123224709 -53749431 - L2 LINE L2 -1267 2047 1894 10141 268 62 24 chrX 123224709 123227748 -53746392 + ERVL LTR ERVL 635 3822 -1832 6488 226 43 6 chrX 123227760 123229200 -53744940 + ERVL LTR ERVL 4072 5564 -200 902 197 0 22 chrX 123229200 123229383 -53744757 - MLT1C LTR MaLR 0 467 289 670 233 0 13 chrX 123229383 123229542 -53744598 + L1M4c LINE L1 1674 1830 -4554 1524 232 76 4 chrX 123229557 123230044 -53744096 + L1M4c LINE L1 1963 2484 -3900 12676 179 27 37 chrX 123230067 123231895 -53742245 - L1PB1 LINE L1 0 6867 5023 2024 125 0 7 chrX 123231895 123232218 -53741922 - AluSx SINE Alu 0 321 1 12676 179 27 37 chrX 123232218 123233014 -53741126 - L1PB1 LINE L1 -1844 5023 4221 1125 63 0 0 chrX 123233014 123233156 -53740984 - L1PA7 LINE L1 -8 6146 6005 12676 179 27 37 chrX 123233156 123235461 -53738679 - L1PB1 LINE L1 -2646 4221 1895 2134 117 3 13 chrX 123235461 123235761 -53738379 - AluSx SINE Alu -15 297 1 1807 162 0 0 chrX 123235766 123236044 -53738096 - AluSx SINE Alu -2 310 33 12676 179 27 37 chrX 123236044 123236179 -53737961 - L1PB1 LINE L1 -4842 2025 1890 998 141 5 11 chrX 123236178 123236346 -53737794 - L1PA6 LINE L1 -92 6062 5896 * 299 263 105 0 chrX 123236461 123236537 -53737603 - MER5A DNA MER1_type -43 146 63 214 243 29 29 chrX 123236492 123236562 -53737578 + MER5A DNA MER1_type 92 161 -28 * 703 210 65 23 chrX 123236695 123236909 -53737231 - Charlie4 DNA MER1_type 0 1961 1739 716 213 30 15 chrX 123236926 123237123 -53737017 - Charlie4 DNA MER1_type -1729 232 33 512 90 26 0 chrX 123239246 123239324 -53734816 - MADE1 DNA Mariner 0 80 1 261 337 50 0 chrX 123239553 123239654 -53734486 + MIR3 SINE MIR 95 200 -8 2563 54 0 10 chrX 123239742 123240056 -53734084 + AluY SINE Alu 1 311 0 287 276 73 16 chrX 123240428 123240551 -53733589 + L2 LINE L2 3123 3252 -61 187 280 60 0 chrX 123240716 123240766 -53733374 - L2 LINE L2 -10 3303 3251 2068 106 7 17 chrX 123243753 123244055 -53730085 - AluSc SINE Alu -10 299 1 980 182 5 0 chrX 123244060 123244269 -53729871 - L1 LINE L1 -1554 6011 5802 7283 41 0 0 chrX 123244277 123245713 -53728427 - L1PA4 LINE L1 -1 6154 4717 7206 35 15 0 chrX 123245715 123246588 -53727552 + L1P LINE L1 3532 4417 -1729 2551 33 0 0 chrX 123246586 123246887 -53727253 - L1P2 LINE L1 -484 5671 5371 * 3878 191 57 11 chrX 123246886 123251116 -53723024 - L1 LINE L1 -2943 4622 17 331 303 156 0 chrX 123251116 123251238 -53722902 + MER5A DNA MER1_type 49 189 0 21 57 0 0 chrX 123251358 123251393 -53722747 + AT_rich Low_complexity Low_complexity 1 35 0 262 323 124 13 chrX 123251759 123251934 -53722206 - MIR3 SINE MIR -9 199 2 272 333 0 38 chrX 123251952 123252084 -53722056 + MIR SINE MIR 111 237 -25 240 170 0 0 chrX 123252407 123252460 -53721680 + GA-rich Low_complexity Low_complexity 1 53 0 192 304 98 33 chrX 123252600 123252692 -53721448 + L2 LINE L2 3214 3311 -2 321 298 149 37 chrX 123252811 123253026 -53721114 - MIR SINE MIR -7 255 17 200 289 0 0 chrX 123253085 123253123 -53721017 - L2 LINE L2 -22 3291 3254 21 57 0 0 chrX 123253141 123253176 -53720964 + AT_rich Low_complexity Low_complexity 1 35 0 219 380 10 5 chrX 123253203 123253322 -53720818 - MIR SINE MIR -47 161 45 343 332 62 39 chrX 123253359 123253567 -53720573 + MIR SINE MIR 1 213 -49 19047 48 53 3 chrX 123254189 123256645 -53717495 + L1P LINE L1 1 2580 -3566 35027 47 2 1 chrX 123256746 123261341 -53712799 - L1P2 LINE L1 -580 5574 978 206 360 70 30 chrX 123264289 123264389 -53709751 - L2 LINE L2 -9 3263 3160 4773 121 26 27 chrX 123264482 123265262 -53708878 - MER4E LTR ERV1 0 779 1 424 255 239 11 chrX 123265781 123265969 -53708171 - MIR SINE MIR -12 250 20 518 259 142 5 chrX 123266122 123266181 -53707959 - HAL1 LINE L1 -203 2304 2254 1213 237 176 62 chrX 123266181 123266613 -53707527 + MLT1E2 LTR MaLR 1 514 -112 2044 118 0 0 chrX 123266613 123266945 -53707195 - AluSc SINE Alu 0 332 1 1213 237 176 62 chrX 123266945 123267073 -53707067 + MLT1E2 LTR MaLR 514 626 0 518 259 142 5 chrX 123267073 123267084 -53707056 - HAL1 LINE L1 -253 2254 2246 290 25 0 25 chrX 123267084 123267124 -53707016 + (CA)n Simple_repeat Simple_repeat 1 39 0 518 259 142 5 chrX 123267124 123267257 -53706883 - HAL1 LINE L1 -261 2246 2072 1823 168 105 20 chrX 123267258 123267777 -53706363 + MLT2A2 LTR ERVL 1 554 0 7737 132 3 1 chrX 123267777 123268916 -53705224 + HERVL-A2 LTR ERVL 1 1141 -4513 3979 259 63 26 chrX 123268939 123271407 -53702733 - L1ME2 LINE L1 -171 5993 3443 414 289 8 16 chrX 123271420 123271541 -53702599 - FLAM_A SINE Alu 0 133 14 294 217 104 0 chrX 123271649 123271764 -53702376 - L1ME2 LINE L1 -2985 3161 3035 16716 38 5 0 chrX 123271788 123274182 -53699958 - L1PA5 LINE L1 -433 5722 3322 3507 45 0 0 chrX 123274182 123274626 -53699514 + L1PA5 LINE L1 5714 6158 0 461 269 19 37 chrX 123274998 123275214 -53698926 - L1ME2 LINE L1 -3124 3022 2811 279 100 0 0 chrX 123275282 123275322 -53698818 - L1PA15 LINE L1 -9 6156 6117 * 3329 178 17 0 chrX 123275321 123275963 -53698177 + L1P LINE L1 4336 4988 -1158 489 175 0 0 chrX 123275961 123276041 -53698099 - L1ME2 LINE L1 -3369 2777 2698 * 4497 213 69 16 chrX 123276047 123277526 -53696614 - L1MA4 LINE L1 0 6300 4729 13025 191 11 36 chrX 123477530 123478650 -53495490 + L1PB1 LINE L1 2598 3745 -3122 5334 58 30 1 chrX 123478650 123479352 -53494788 + LTR30 LTR ERV1 1 722 0 13025 191 11 36 chrX 123479352 123480062 -53494078 + L1PB1 LINE L1 3745 4471 -2396 2211 124 0 0 chrX 123480062 123480368 -53493772 + AluSq SINE Alu 1 306 -7 13025 191 11 36 chrX 123480368 123482446 -53491694 + L1PB1 LINE L1 4471 6600 -267 423 0 0 0 chrX 123482446 123482493 -53491647 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 13025 191 11 36 chrX 123482493 123482680 -53491460 + L1PB1 LINE L1 6600 6657 -210 2549 50 0 0 chrX 123482680 123482982 -53491158 - AluY SINE Alu -9 302 1 13025 191 11 36 chrX 123482982 123483144 -53490996 + L1PB1 LINE L1 6657 6822 -45 189 0 0 0 chrX 123483163 123483184 -53490956 + (TA)n Simple_repeat Simple_repeat 2 22 0 4265 277 46 28 chrX 123483200 123484740 -53489400 + L1MB7 LINE L1 3685 5252 -894 2527 182 45 136 chrX 123484745 123484807 -53489333 + L1MB7 LINE L1 5338 5404 -780 3036 50 3 0 chrX 123484807 123485184 -53488956 + L1PA7 LINE L1 5776 6153 -1 * 5458 107 54 1 chrX 123485181 123486292 -53487848 + L1PA16 LINE L1 5002 6155 -11 2527 182 45 136 chrX 123485184 123487152 -53486988 + L1MB7 LINE L1 5404 6174 -10 183 80 0 0 chrX 123488480 123488505 -53485635 + (TA)n Simple_repeat Simple_repeat 2 26 0 28 0 0 0 chrX 123489363 123489391 -53484749 + AT_rich Low_complexity Low_complexity 1 28 0 3767 180 61 4 chrX 123489652 123490446 -53483694 + L1MB1 LINE L1 5219 6053 -136 369 387 0 8 chrX 123490575 123490699 -53483441 - L2 LINE L2 -13 3259 3137 704 97 0 0 chrX 123493245 123493338 -53480802 - L1PA10 LINE L1 -15 6153 6061 210 313 25 0 chrX 123493342 123493422 -53480718 + L3 LINE CR1 923 1004 -573 207 392 51 0 chrX 123493475 123493554 -53480586 + L2 LINE L2 3169 3251 -21 929 312 41 32 chrX 123493672 123494134 -53480006 + MLT1J LTR MaLR 16 481 -30 338 337 34 23 chrX 123494150 123494325 -53479815 + L3 LINE CR1 1238 1414 -163 354 236 112 46 chrX 123495123 123495493 -53478647 + L1MEd LINE L1 1234 1552 -4864 1614 156 23 7 chrX 123495550 123495851 -53478289 + L1MA4 LINE L1 5566 5871 -429 2363 156 26 13 chrX 123495877 123496340 -53477800 + L1MA4 LINE L1 5825 6293 -7 503 283 13 7 chrX 123496357 123496509 -53477631 + L1MEd LINE L1 1747 1899 -4708 273 57 0 0 chrX 123496708 123496743 -53477397 + (TA)n Simple_repeat Simple_repeat 2 36 0 321 214 0 14 chrX 123498312 123498382 -53475758 + MER5B DNA MER1_type 109 177 -1 525 256 135 0 chrX 123498455 123498611 -53475529 - MER5A DNA MER1_type -10 179 3 609 311 66 68 chrX 123499190 123499417 -53474723 - MLT1J2 LTR MaLR -12 438 211 787 152 0 0 chrX 123499417 123499555 -53474585 + L1MA4 LINE L1 6157 6294 -6 609 311 66 68 chrX 123499555 123499738 -53474402 - MLT1J2 LTR MaLR -239 211 29 285 217 36 36 chrX 123499792 123499875 -53474265 - MLT1L LTR MaLR -531 84 2 241 281 39 85 chrX 123500005 123500158 -53473982 + MIR SINE MIR 74 219 -43 217 272 48 87 chrX 123501348 123501451 -53472689 - MER5A DNA MER1_type -55 134 36 266 377 40 23 chrX 123501463 123501638 -53472502 - MER5B DNA MER1_type 0 178 1 550 294 41 50 chrX 123502487 123502705 -53471435 - MIR SINE MIR -34 228 13 331 310 78 42 chrX 123502735 123502877 -53471263 + MIR SINE MIR 11 157 -105 469 354 22 11 chrX 123503818 123503999 -53470141 + L1MA7 LINE L1 188 370 -6283 294 276 62 9 chrX 123504010 123504098 -53470042 + L1MA7 LINE L1 276 1015 -5638 361 238 24 24 chrX 123504121 123504205 -53469935 + L1M3de LINE L1 283 366 -6287 336 269 19 48 chrX 123504211 123504315 -53469825 + L1M3de LINE L1 266 366 -6287 353 260 21 21 chrX 123504531 123504627 -53469513 + L1M3de LINE L1 270 365 -6288 2660 300 24 12 chrX 123504750 123505509 -53468631 + L1M3de LINE L1 928 1695 -4958 5282 123 33 14 chrX 123505523 123505998 -53468142 + L1PA13 LINE L1 5009 5473 -690 180 0 0 0 chrX 123505998 123506018 -53468122 + (TA)n Simple_repeat Simple_repeat 2 21 0 5282 123 33 14 chrX 123506018 123506674 -53467466 + L1PA13 LINE L1 5473 6158 -5 14161 204 48 26 chrX 123506680 123507179 -53466961 + L1MA7 LINE L1 1520 2007 -4870 7078 43 12 0 chrX 123507179 123508789 -53465351 + L1PA5 LINE L1 4558 6147 -7 14161 204 48 26 chrX 123508789 123512969 -53461171 + L1MA7 LINE L1 2007 6340 -537 2801 7 0 0 chrX 123512969 123513277 -53460863 + AluYb8 SINE Alu 1 308 -10 14161 204 48 26 chrX 123513277 123513827 -53460313 + L1MA7 LINE L1 6340 6876 -1 11558 181 114 10 chrX 123513848 123516874 -53457266 + L1PBa LINE L1 6 3348 -3514 2396 217 42 39 chrX 123517321 123517942 -53456198 - L1MD2 LINE L1 0 6242 5620 743 289 44 4 chrX 123517943 123518389 -53455751 - L1MDb LINE L1 -5860 549 7 233 344 33 0 chrX 123519047 123519137 -53455003 - MIR SINE MIR -77 185 93 819 290 100 12 chrX 123519685 123520625 -53453515 + L1ME3A LINE L1 5148 6165 -5 443 302 106 13 chrX 123520643 123520779 -53453361 + L1MC/D LINE L1 2979 3101 -3045 2427 87 0 0 chrX 123520779 123521091 -53453049 + AluSx SINE Alu 1 312 0 443 302 106 13 chrX 123521091 123521265 -53452875 + L1MC/D LINE L1 3101 3318 -2828 9542 166 71 22 chrX 123521280 123523233 -53450907 + L1MB3 LINE L1 120 2167 -4217 4115 181 38 25 chrX 123523236 123524100 -53450040 + L1MB3 LINE L1 5544 6418 -1 301 306 0 41 chrX 123524184 123524305 -53449835 + L1MC/D LINE L1 5262 5377 -2431 528 176 0 0 chrX 123524306 123524414 -53449726 + L1PB4 LINE L1 6048 6155 -1 257 197 0 0 chrX 123524455 123524521 -53449619 + L1MC/D LINE L1 5373 5438 -2370 205 204 0 23 chrX 123524856 123524900 -53449240 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 22 56 0 0 chrX 123525576 123525612 -53448528 + AT_rich Low_complexity Low_complexity 1 36 0 285 325 80 35 chrX 123525981 123526320 -53447820 + HAL1b LINE L1 66 419 -929 27 62 0 0 chrX 123526429 123526477 -53447663 + AT_rich Low_complexity Low_complexity 1 48 0 2240 99 3 10 chrX 123527071 123527383 -53446757 + AluSg SINE Alu 1 310 0 2391 194 11 7 chrX 123527675 123528128 -53446012 - L1MA5 LINE L1 -330 5970 5516 31 26 0 0 chrX 123528759 123528797 -53445343 + AT_rich Low_complexity Low_complexity 1 38 0 10429 226 31 19 chrX 123528801 123529609 -53444531 - L1PA16 LINE L1 -18 6851 6054 1828 90 0 56 chrX 123529609 123529877 -53444263 - AluSc SINE Alu -21 288 36 10429 226 31 19 chrX 123529877 123530369 -53443771 - L1PA16 LINE L1 -815 6054 5570 1833 91 0 20 chrX 123530369 123530621 -53443519 - AluY SINE Alu -1 310 64 * 1903 88 14 39 chrX 123530619 123530903 -53443237 - AluY SINE Alu -34 277 1 10429 226 31 19 chrX 123530903 123533696 -53440444 - L1PA16 LINE L1 -1581 5288 2687 417 304 154 45 chrX 123536444 123536664 -53437476 + MIR SINE MIR 13 256 -6 265 356 0 50 chrX 123538860 123538961 -53435179 + L2 LINE L2 3155 3250 -22 2023 165 70 5 chrX 123539023 123539422 -53434718 + MSTA LTR MaLR 1 425 -3 2147 140 75 39 chrX 123539424 123539861 -53434279 + MSTA-int LTR MaLR 1 453 -1198 399 21 0 0 chrX 123540337 123540385 -53433755 + (CA)n Simple_repeat Simple_repeat 2 49 0 319 367 14 0 chrX 123540386 123540533 -53433607 + L2 LINE L2 2509 2657 -657 647 183 14 21 chrX 123541874 123542016 -53432124 - L1PB4 LINE L1 -2 6154 6014 233 308 53 30 chrX 123542199 123542332 -53431808 + L1ME LINE L1 5564 5699 -422 1279 189 90 22 chrX 123542601 123542923 -53431217 + MER2 DNA MER2_type 1 344 0 3902 215 30 34 chrX 123543451 123544247 -53429893 + L1M4 LINE L1 1 794 -5748 393 22 0 0 chrX 123544247 123544293 -53429847 + (CA)n Simple_repeat Simple_repeat 2 47 0 3902 215 30 34 chrX 123544293 123544455 -53429685 + L1M4 LINE L1 794 955 -5587 2341 110 0 0 chrX 123544558 123544867 -53429273 - AluSc SINE Alu 0 309 1 22 35 0 0 chrX 123545003 123545032 -53429108 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 123545113 123545142 -53428998 + AT_rich Low_complexity Low_complexity 1 29 0 358 339 16 16 chrX 123546037 123546164 -53427976 - MIR SINE MIR -63 145 19 2602 83 19 11 chrX 123546203 123546575 -53427565 - THE1C LTR MaLR 0 375 1 233 266 0 16 chrX 123550889 123550953 -53423187 + MSTD LTR MaLR 34 96 -332 9037 80 5 13 chrX 123550953 123552237 -53421903 - L1PA7 LINE L1 -1683 4463 3191 6622 57 17 14 chrX 123552237 123553914 -53420226 + L1PA7 LINE L1 4471 6153 -1 338 276 11 0 chrX 123553915 123554002 -53420138 + MSTD LTR MaLR 88 175 -221 240 35 0 0 chrX 123554009 123554038 -53420102 + (TC)n Simple_repeat Simple_repeat 2 30 0 703 250 17 17 chrX 123554040 123554216 -53419924 + MSTD LTR MaLR 220 395 -1 5800 250 57 36 chrX 123554219 123555916 -53418224 + MSTD-int LTR MaLR 2 1733 -2 911 255 85 53 chrX 123555931 123556096 -53418044 + MSTD LTR MaLR 9 167 -229 441 0 0 0 chrX 123556096 123556145 -53417995 + (TC)n Simple_repeat Simple_repeat 2 50 0 405 0 0 0 chrX 123556144 123556189 -53417951 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 911 255 85 53 chrX 123556145 123556399 -53417741 + MSTD LTR MaLR 167 396 0 370 197 14 0 chrX 123556895 123556966 -53417174 + Tigger2 DNA MER2_type 2 73 -2645 568 226 71 77 chrX 123557000 123557168 -53416972 - MER8 DNA MER2_type -63 176 10 306 106 0 0 chrX 123557186 123557233 -53416907 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 245 19 38 chrX 123557757 123557810 -53416330 - MIR SINE MIR -111 151 100 189 393 49 31 chrX 123557991 123558154 -53415986 + L2 LINE L2 3107 3272 0 242 248 46 46 chrX 123560134 123560243 -53413897 - MLT1L LTR MaLR 0 615 507 263 197 121 0 chrX 123561203 123561269 -53412871 - L2 LINE L2 -52 3220 3147 810 254 19 15 chrX 123562344 123562549 -53411591 - MER58A DNA MER1_type -15 209 4 6418 146 15 13 chrX 123562674 123564666 -53409474 - L1MA2 LINE L1 0 7723 5722 1167 118 0 0 chrX 123564686 123564864 -53409276 - L1MA1 LINE L1 -86 6216 6039 1961 146 6 0 chrX 123564874 123565203 -53408937 - THE1C-int LTR MaLR -1247 333 3 1609 176 49 35 chrX 123565205 123565575 -53408565 - THE1C LTR MaLR 0 375 1 4852 176 58 6 chrX 123565575 123566466 -53407674 - L1MA2 LINE L1 -6613 952 15 626 308 67 12 chrX 123566663 123567101 -53407039 + MLT1J LTR MaLR 6 506 -5 235 82 122 0 chrX 123567504 123567553 -53406587 - L1MCa LINE L1 -4366 2060 2006 226 132 113 0 chrX 123567523 123567576 -53406564 + L1MCa LINE L1 2006 2064 -4362 * 323 298 0 48 chrX 123567642 123567766 -53406374 + L1MC4 LINE L1 6588 6705 -1337 228 160 0 20 chrX 123567826 123567876 -53406264 - LTR66 LTR ERVL -172 438 390 321 214 0 14 chrX 123569434 123569504 -53404636 + MER5B DNA MER1_type 109 177 -1 525 256 135 0 chrX 123569577 123569733 -53404407 - MER5A DNA MER1_type -10 179 3 609 311 66 68 chrX 123570312 123570539 -53403601 - MLT1J2 LTR MaLR -12 438 211 787 152 0 0 chrX 123570539 123570677 -53403463 + L1MA4 LINE L1 6157 6294 -6 609 311 66 68 chrX 123570677 123570860 -53403280 - MLT1J2 LTR MaLR -239 211 29 285 217 36 36 chrX 123570914 123570997 -53403143 - MLT1L LTR MaLR -531 84 2 241 281 39 85 chrX 123571127 123571280 -53402860 + MIR SINE MIR 74 219 -43 217 272 48 87 chrX 123572470 123572573 -53401567 - MER5A DNA MER1_type -55 134 36 266 377 40 23 chrX 123572585 123572760 -53401380 - MER5B DNA MER1_type 0 178 1 316 282 7 78 chrX 123573609 123573751 -53400389 - MIR SINE MIR -34 228 97 3110 65 2 25 chrX 123573752 123574183 -53399957 + L1P LINE L1 4043 4463 -1683 233 266 0 16 chrX 123574183 123574247 -53399893 - MSTC LTR MaLR -332 96 34 2602 83 19 11 chrX 123578561 123578933 -53395207 + THE1C LTR MaLR 1 375 0 358 339 16 16 chrX 123578972 123579099 -53395041 + MIR SINE MIR 19 145 -63 22 35 0 0 chrX 123579994 123580023 -53394117 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 123580104 123580133 -53394007 + AT_rich Low_complexity Low_complexity 1 29 0 2341 110 0 0 chrX 123580269 123580578 -53393562 + AluSc SINE Alu 1 309 0 3902 215 30 34 chrX 123580681 123580843 -53393297 - L1M4 LINE L1 -5587 955 794 393 22 0 0 chrX 123580843 123580889 -53393251 + (TG)n Simple_repeat Simple_repeat 2 47 0 3902 215 30 34 chrX 123580889 123581685 -53392455 - L1M4 LINE L1 -5748 794 1 1279 189 90 22 chrX 123582213 123582535 -53391605 - MER2 DNA MER2_type 0 344 1 233 308 53 30 chrX 123582804 123582937 -53391203 - L1ME LINE L1 -422 5699 5564 647 183 14 21 chrX 123583120 123583262 -53390878 + L1PB4 LINE L1 6014 6154 -2 319 367 14 0 chrX 123584603 123584750 -53389390 - L2 LINE L2 -657 2657 2509 381 22 0 0 chrX 123584751 123584797 -53389343 + (TG)n Simple_repeat Simple_repeat 2 47 0 2147 140 75 39 chrX 123585273 123585710 -53388430 - MSTA-int LTR MaLR -1198 453 1 2023 165 70 5 chrX 123585712 123586111 -53388029 - MSTA LTR MaLR -3 425 1 265 356 0 50 chrX 123586173 123586274 -53387866 - L2 LINE L2 -22 3250 3155 417 304 154 45 chrX 123588470 123588690 -53385450 - MIR SINE MIR -6 256 13 10418 227 31 19 chrX 123591438 123594232 -53379908 + L1PA16 LINE L1 2687 5447 -1422 1903 88 14 39 chrX 123594232 123594516 -53379624 + AluY SINE Alu 1 277 -34 1840 91 0 20 chrX 123594516 123594767 -53379373 + AluY SINE Alu 64 311 0 10418 227 31 19 chrX 123594767 123595259 -53378881 + L1PA16 LINE L1 5447 5932 -937 1828 90 0 56 chrX 123595259 123595527 -53378613 + AluSc SINE Alu 36 288 -21 10418 227 31 19 chrX 123595527 123596335 -53377805 + L1PA16 LINE L1 5932 6851 -18 31 26 0 0 chrX 123596339 123596377 -53377763 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chrX 123598145 123598166 -53375974 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chrX 123599062 123599105 -53375035 + (CA)n Simple_repeat Simple_repeat 1 43 0 393 321 15 23 chrX 123600446 123600577 -53373563 + L2 LINE L2 3142 3271 -1 24 67 0 0 chrX 123600610 123600655 -53373485 + AT_rich Low_complexity Low_complexity 1 45 0 528 245 145 25 chrX 123600760 123600919 -53373221 - MER5A DNA MER1_type -3 186 9 186 312 57 89 chrX 123600912 123601069 -53373071 + MER5A DNA MER1_type 23 174 -15 * 227 343 0 0 chrX 123602056 123602126 -53372014 + MER117 DNA MER1_type 19 88 -109 427 313 176 6 chrX 123602220 123602396 -53371744 + MIR SINE MIR 20 225 -37 201 176 0 0 chrX 123602660 123602694 -53371446 + A-rich Low_complexity Low_complexity 1 34 0 417 261 93 56 chrX 123602754 123602915 -53371225 + MIR SINE MIR 91 257 -5 344 245 0 10 chrX 123602991 123603093 -53371047 + CT-rich Low_complexity Low_complexity 4 104 0 1299 133 88 11 chrX 123604076 123604339 -53369801 - L1MA4 LINE L1 -4 6296 6014 338 213 67 0 chrX 123606033 123606108 -53368032 + MIR SINE MIR 181 260 -2 5812 149 8 17 chrX 123606424 123607980 -53366160 - L1PB1 LINE L1 0 6151 4614 834 223 5 0 chrX 123607975 123608181 -53365959 + L1PB1 LINE L1 4402 4608 -1538 * 1218 217 0 11 chrX 123608241 123608504 -53365636 - L1PB4 LINE L1 0 6156 5897 306 315 47 24 chrX 123610391 123610518 -53363622 - L2 LINE L2 -4 3309 3180 23 33 0 0 chrX 123610634 123610664 -53363476 + AT_rich Low_complexity Low_complexity 1 30 0 1979 138 46 30 chrX 123611463 123611832 -53362308 + THE1C LTR MaLR 1 375 0 9476 118 52 16 chrX 123611832 123613356 -53360784 + THE1C-int LTR MaLR 1 1580 0 1860 160 41 30 chrX 123613358 123613727 -53360413 + THE1C LTR MaLR 3 375 0 191 265 41 0 chrX 123614518 123614567 -53359573 - L3 LINE CR1 -587 990 940 189 0 0 0 chrX 123615135 123615156 -53358984 + (TGG)n Simple_repeat Simple_repeat 3 23 0 361 123 0 25 chrX 123615488 123615569 -53358571 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 21 71 0 0 chrX 123615578 123615620 -53358520 + AT_rich Low_complexity Low_complexity 1 42 0 604 168 34 73 chrX 123617968 123618147 -53355993 + MER114 LTR ERV 27 198 -450 1367 124 5 0 chrX 123618431 123618616 -53355524 + AluSx SINE Alu 3 188 -124 9083 239 29 16 chrX 123618694 123619148 -53354992 - L1PA16 LINE L1 -10 6859 6412 2205 134 19 16 chrX 123619148 123619522 -53354618 - THE1C LTR MaLR 0 375 1 9083 239 29 16 chrX 123619522 123624180 -53349960 - L1PA16 LINE L1 -457 6412 1671 477 349 63 36 chrX 123624179 123624511 -53349629 - L1PA16 LINE L1 -5400 1439 1099 * 2130 257 24 6 chrX 123624518 123625012 -53349128 - L1PA16 LINE L1 -6265 574 72 498 277 85 73 chrX 123625102 123625513 -53348627 - L1MEc LINE L1 -4357 2039 1624 5936 197 57 33 chrX 123625523 123627868 -53346272 - L1MA5A LINE L1 -6 6291 3878 1382 161 22 5 chrX 123627873 123628200 -53345940 - AluSx SINE Alu 0 386 56 1841 133 63 27 chrX 123628204 123628536 -53345604 - THE1C LTR MaLR -29 346 3 9595 126 5 59 chrX 123628538 123630209 -53343931 - THE1C-int LTR MaLR 0 1580 1 1747 157 60 36 chrX 123630209 123630573 -53343567 - THE1C LTR MaLR 0 375 3 269 222 28 28 chrX 123630801 123630909 -53343231 + L1ME4a LINE L1 5978 6085 -36 736 318 13 21 chrX 123630909 123631142 -53342998 + MIR SINE MIR 2 232 -30 23 86 0 0 chrX 123631186 123631244 -53342896 + AT_rich Low_complexity Low_complexity 1 58 0 11662 167 56 7 chrX 123631367 123635918 -53338222 - L1MA1 LINE L1 -15 7706 338 491 171 45 18 chrX 123635918 123636029 -53338111 - L1MA1 LINE L1 -7436 129 16 2938 198 15 11 chrX 123637853 123638520 -53335620 - L1P LINE L1 -2579 3567 2898 4710 139 43 20 chrX 123638523 123640065 -53334075 + L1PA15 LINE L1 4581 6157 -8 2220 54 3 50 chrX 123640075 123640402 -53333738 + AluY SINE Alu 1 313 0 278 248 228 27 chrX 123641303 123641452 -53332688 + MIR SINE MIR 65 243 -19 303 122 0 0 chrX 123641510 123641559 -53332581 + (TCC)n Simple_repeat Simple_repeat 3 51 0 340 282 53 64 chrX 123642143 123642249 -53331891 - MIR SINE MIR -11 251 145 1682 195 0 14 chrX 123642249 123642546 -53331594 - AluJo SINE Alu -19 293 1 340 282 53 64 chrX 123642546 123642678 -53331462 - MIR SINE MIR -117 145 13 282 258 79 11 chrX 123642695 123642784 -53331356 + MIR3 SINE MIR 63 157 -51 21 36 0 0 chrX 123643974 123644002 -53330138 + AT_rich Low_complexity Low_complexity 1 28 0 268 286 90 15 chrX 123644055 123644188 -53329952 - L1MC4a LINE L1 -318 7490 7348 846 183 150 40 chrX 123644196 123644470 -53329670 - L1MD3 LINE L1 -782 7213 6910 2336 187 49 42 chrX 123644508 123645075 -53329065 - L1MD2 LINE L1 -2 6617 6047 2260 258 48 1 chrX 123645087 123646054 -53328086 - ERVL-B1 LTR ERVL -4646 1118 57 1049 253 44 80 chrX 123646065 123646515 -53327625 - MLT2B1 LTR ERVL -86 434 1 2139 227 43 25 chrX 123646515 123647668 -53326472 - L1MD2 LINE L1 -563 6056 4890 1607 108 0 0 chrX 123647669 123647882 -53326258 + AluSx SINE Alu 1 213 -99 279 0 0 0 chrX 123647921 123647952 -53326188 + (TC)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chrX 123647951 123647982 -53326158 + (TA)n Simple_repeat Simple_repeat 1 31 0 264 278 0 10 chrX 123647992 123648089 -53326051 - L1MD2 LINE L1 -3455 2951 2856 2435 78 3 3 chrX 123648140 123648449 -53325691 + AluSg SINE Alu 1 309 -1 1016 226 84 87 chrX 123648462 123648830 -53325310 - LTR55 LTR ERV -38 510 144 4815 136 8 3 chrX 123648864 123649630 -53324510 - L1PB4 LINE L1 -26 6130 5361 743 160 0 19 chrX 123649629 123649785 -53324355 + L1PB4 LINE L1 5212 5364 -782 * 511 233 41 47 chrX 123649785 123649957 -53324183 - LTR55 LTR ERV -377 171 1 3049 235 84 23 chrX 123649992 123651598 -53322542 - L1MD2 LINE L1 -3583 2823 1124 1328 175 29 19 chrX 123651644 123652512 -53321628 - L1PA16 LINE L1 -20 6146 5164 1762 288 85 19 chrX 123652515 123653188 -53320952 - L1MD2 LINE L1 -5315 1094 378 1215 317 100 36 chrX 123653239 123653819 -53320321 - L1MDb LINE L1 -5784 625 9 1577 261 92 51 chrX 123653821 123654825 -53319315 - L1MC4a LINE L1 -944 6864 5820 22 88 0 0 chrX 123656056 123656113 -53318027 + AT_rich Low_complexity Low_complexity 1 57 0 213 139 0 0 chrX 123656254 123656297 -53317843 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 67 0 0 chrX 123656404 123656434 -53317706 + (GA)n Simple_repeat Simple_repeat 1 30 0 902 248 49 7 chrX 123656472 123656743 -53317397 + MER34 LTR ERV1 11 265 -277 665 214 156 0 chrX 123656770 123656962 -53317178 + MER34 LTR ERV1 321 542 0 240 352 45 11 chrX 123657115 123657203 -53316937 + L2 LINE L2 3172 3262 -10 210 71 0 0 chrX 123657399 123657427 -53316713 + (TA)n Simple_repeat Simple_repeat 1 28 0 2116 119 39 28 chrX 123658818 123659178 -53314962 - THE1B LTR MaLR 0 364 1 2627 126 2 3 chrX 123659313 123659858 -53314282 + HERVH LTR ERV1 4557 5149 -2564 1504 118 0 0 chrX 123659859 123660079 -53314061 + HERVH LTR ERV1 5600 5819 -1894 2334 93 53 13 chrX 123660079 123660454 -53313686 + HERVH LTR ERV1 7324 7713 0 1687 114 6 9 chrX 123660454 123660778 -53313362 + LTR7 LTR ERV1 1 412 -38 219 139 0 0 chrX 123660778 123660814 -53313326 + (A)n Simple_repeat Simple_repeat 1 36 0 1203 188 67 114 chrX 123661833 123662010 -53312130 - L1MC3 LINE L1 -1095 6690 6506 2709 112 3 0 chrX 123662010 123662384 -53311756 - THE1C LTR MaLR 0 375 1 1203 188 67 114 chrX 123662384 123662653 -53311487 - L1MC3 LINE L1 -1279 6506 6265 926 237 93 35 chrX 123662670 123663045 -53311095 - L1M4 LINE L1 -2170 3976 3580 5290 132 14 10 chrX 123663050 123663911 -53310229 - L1PA16 LINE L1 -1 6165 5293 3565 29 0 0 chrX 123663917 123664337 -53309803 - L1PA4 LINE L1 -3 6152 5733 6762 237 16 14 chrX 123664354 123666206 -53307934 - L1 LINE L1 -1905 4241 2386 2330 143 33 6 chrX 123666225 123666577 -53307563 + THE1B LTR MaLR 1 428 0 10298 124 11 27 chrX 123666577 123668182 -53305958 + THE1B-int LTR MaLR 1 1580 0 2037 165 34 0 chrX 123668182 123668534 -53305606 + THE1B LTR MaLR 1 364 0 394 313 35 54 chrX 123669000 123669313 -53304827 - L1MCb LINE L1 -5646 399 93 361 229 51 25 chrX 123669357 123669475 -53304665 + L1MCc LINE L1 1393 1513 -4910 492 320 60 16 chrX 123669608 123670631 -53303509 + L1MCc LINE L1 516 1662 -4764 379 220 51 25 chrX 123670757 123670875 -53303265 - L1MCc LINE L1 -4910 1513 1393 544 260 35 40 chrX 123670921 123671121 -53303019 - L1MCc LINE L1 -5412 1011 813 283 301 52 40 chrX 123671384 123671598 -53302542 - L1MCc LINE L1 -6056 367 148 1449 253 8 8 chrX 123671598 123671962 -53302178 - MLT1A1 LTR MaLR -1 364 1 283 301 52 40 chrX 123671962 123672019 -53302121 - L1MCc LINE L1 -6275 148 93 3607 225 44 32 chrX 123672100 123673119 -53301021 - L1MD2 LINE L1 -24 6729 5699 2432 138 62 5 chrX 123673138 123673543 -53300597 + MSTA LTR MaLR 1 428 0 3469 282 51 23 chrX 123673563 123675105 -53299035 - L1MD2 LINE L1 -1281 5259 3674 1928 268 50 8 chrX 123675129 123675871 -53298269 - L1MD2 LINE L1 -3139 3401 2629 2382 246 45 25 chrX 123675944 123676779 -53297361 - L1MD2 LINE L1 -4366 2174 1323 1584 317 41 20 chrX 123676775 123677311 -53296829 - L1MD2 LINE L1 -5854 689 143 * 250 309 21 21 chrX 123677361 123677549 -53296591 - L1M4 LINE L1 -1016 5130 4943 419 310 115 17 chrX 123677557 123677927 -53296213 - MLT1J1 LTR MaLR -24 426 2 364 271 102 54 chrX 123677967 123678339 -53295801 - L1M4 LINE L1 -1279 4867 4478 504 326 79 26 chrX 123678355 123678367 -53295773 - L1M4 LINE L1 -1720 4426 4416 1066 270 53 22 chrX 123678367 123678556 -53295584 - MLT1A2 LTR MaLR -4 370 188 372 22 0 0 chrX 123678556 123678601 -53295539 + (GA)n Simple_repeat Simple_repeat 2 46 0 1066 270 53 22 chrX 123678601 123678770 -53295370 - MLT1A2 LTR MaLR -186 188 1 504 326 79 26 chrX 123678770 123679137 -53295003 - L1M4 LINE L1 -1730 4416 4027 463 137 34 26 chrX 123679458 123679575 -53294565 - L1MA8 LINE L1 -1 6290 6173 247 343 25 0 chrX 123679617 123679752 -53294388 - L1ME LINE L1 -567 5603 5465 385 256 65 55 chrX 123679773 123680033 -53294107 - L1 LINE L1 -1128 5018 4747 355 321 57 27 chrX 123680054 123680493 -53293647 - L1 LINE L1 -1748 4398 3947 316 315 56 32 chrX 123680542 123680882 -53293258 - L1 LINE L1 -2290 3856 3509 2044 205 8 5 chrX 123680938 123681429 -53292711 + LTR69 LTR ERVL 1 555 -33 22 0 0 0 chrX 123681639 123681661 -53292479 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 123681680 123681708 -53292432 + AT_rich Low_complexity Low_complexity 1 28 0 1794 115 10 3 chrX 123681708 123681996 -53292144 - L1MA2 LINE L1 -1 6303 6014 450 275 64 44 chrX 123682075 123682435 -53291705 - L1MC5 LINE L1 -283 7678 7312 465 221 13 46 chrX 123682439 123682568 -53291572 - L1MC5 LINE L1 -927 6858 6710 220 225 50 0 chrX 123682580 123682660 -53291480 + (TA)n Simple_repeat Simple_repeat 1 84 0 1233 208 21 0 chrX 123683003 123683292 -53290848 - L1MA5 LINE L1 0 6300 6006 27 29 0 0 chrX 123683731 123683765 -53290375 + AT_rich Low_complexity Low_complexity 1 34 0 1198 222 13 3 chrX 123734514 123734825 -53239315 - L1 LINE L1 -2390 3756 3443 39009 91 4 3 chrX 123734829 123740990 -53233150 - L1PA10 LINE L1 0 6168 1 643 230 44 48 chrX 123740993 123741241 -53232899 - L1M4c LINE L1 -4731 2228 1982 1033 280 17 3 chrX 123741248 123741609 -53232531 - L1M4c LINE L1 -4985 1870 1505 826 279 49 8 chrX 123741606 123741853 -53232287 - L1M4c LINE L1 -5636 1223 967 * 278 114 0 89 chrX 123741941 123742020 -53232120 - L1MA7 LINE L1 -6 6285 6214 367 288 18 9 chrX 123742020 123742131 -53232009 - L1M4c LINE L1 -5885 974 863 565 213 41 0 chrX 123742144 123742266 -53231874 - L1M4c LINE L1 -6065 794 668 2356 191 25 8 chrX 123742336 123742808 -53231332 + L1PA16 LINE L1 5683 6162 -4 325 339 0 0 chrX 123742832 123742950 -53231190 + MIR SINE MIR 125 242 -20 180 0 0 0 chrX 123743775 123743795 -53230345 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1512 186 35 55 chrX 123745579 123745977 -53228163 + MLT1B LTR MaLR 1 390 0 266 282 41 77 chrX 123746118 123746313 -53227827 + L1M3d LINE L1 241 428 -5703 414 269 74 27 chrX 123746489 123746824 -53227316 + L1M3d LINE L1 925 1352 -4779 4761 158 9 4 chrX 123746825 123747609 -53226531 + HSMAR2 DNA Mariner 514 1301 -1 5793 242 49 16 chrX 123747609 123749376 -53224764 + L1M3d LINE L1 2496 4327 -1883 342 0 0 0 chrX 123749376 123749414 -53224726 + (CA)n Simple_repeat Simple_repeat 1 38 0 5793 242 49 16 chrX 123749414 123749476 -53224664 + L1M3d LINE L1 4327 4385 -1825 7202 133 53 8 chrX 123749481 123751267 -53222873 - L1PBa LINE L1 -3303 3559 1695 2042 250 49 12 chrX 123751268 123751863 -53222277 + L1M3d LINE L1 4394 5010 -1200 1121 243 19 102 chrX 123751884 123752345 -53221795 - L1 LINE L1 -992 5154 4732 468 217 31 12 chrX 123752316 123752477 -53221663 - L1 LINE L1 -1633 4513 4350 * 9997 210 55 47 chrX 123752532 123755824 -53218316 + L1MA6 LINE L1 3091 6420 -1145 1155 183 0 10 chrX 123755828 123756036 -53218104 + AluJb SINE Alu 87 292 -20 414 236 0 0 chrX 123756037 123756126 -53218014 + L1MA6 LINE L1 6415 6503 -1062 16617 157 7 2 chrX 123756131 123759924 -53214216 - L1PA11 LINE L1 -3 7609 3841 2906 226 31 34 chrX 123760046 123760748 -53213392 - L1PA11 LINE L1 -6880 701 2 659 126 126 103 chrX 123760727 123760966 -53213174 + L1MA6 LINE L1 6490 6740 -840 * 1433 162 74 0 chrX 123760966 123761250 -53212890 + L1MA6 LINE L1 7415 7719 0 702 224 0 0 chrX 123761285 123761428 -53212712 - FLAM_C SINE Alu 0 143 1 957 165 0 13 chrX 123761824 123761982 -53212158 + FRAM SINE Alu 18 173 -3 581 116 11 0 chrX 123762002 123762097 -53212043 - L1PA15 LINE L1 -6 6159 6064 5753 222 29 39 chrX 123762197 123763847 -53210293 - L1PA12 LINE L1 -3793 3791 1368 5142 159 14 7 chrX 123763947 123765233 -53208907 - L1PA13 LINE L1 -87 6076 4786 227 318 69 12 chrX 123765240 123765413 -53208727 - L1MEc LINE L1 -4576 1685 1503 2692 185 78 0 chrX 123765426 123765987 -53208153 - L1MC1 LINE L1 -69 6264 5660 497 234 102 58 chrX 123765992 123766356 -53207784 - L1MEc LINE L1 -4713 1367 988 5165 174 35 12 chrX 123766408 123767834 -53206306 - L1MA6 LINE L1 -3 6297 4837 1869 144 81 32 chrX 123767834 123768181 -53205959 + THE1B LTR MaLR 1 364 0 5165 174 35 12 chrX 123768181 123768481 -53205659 - L1MA6 LINE L1 -1463 4837 4545 395 214 53 15 chrX 123768483 123768614 -53205526 - L1MEc LINE L1 -5073 997 862 1036 367 61 35 chrX 123768692 123769715 -53204425 - HERV16 LTR ERVL -827 4937 3849 512 71 51 0 chrX 123769725 123769823 -53204317 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 1570 216 31 8 chrX 123769999 123770356 -53203784 - MLT1A1 LTR MaLR 0 365 1 2389 329 61 26 chrX 123770672 123771690 -53202450 - HERV16 LTR ERVL -1902 3094 2245 288 0 0 0 chrX 123771690 123771722 -53202418 + (TA)n Simple_repeat Simple_repeat 2 33 0 2389 329 61 26 chrX 123771722 123772162 -53201978 - HERV16 LTR ERVL -2751 2245 1822 259 394 40 22 chrX 123772341 123772618 -53201522 - HERV16 LTR ERVL -4103 1661 1380 1366 314 49 18 chrX 123772869 123773420 -53200720 - HERV16 LTR ERVL -4168 828 261 291 263 50 0 chrX 123773567 123773647 -53200493 - HERV16 LTR ERVL -4912 84 1 764 319 31 63 chrX 123773655 123774112 -53200028 - LTR16A LTR ERVL -8 442 1 6953 176 21 6 chrX 123774302 123776009 -53198131 - L1M1 LINE L1 -682 7042 5310 * 19219 193 31 16 chrX 123776008 123778480 -53195660 - L1M1 LINE L1 -2739 4826 2393 2495 63 0 0 chrX 123778480 123778779 -53195361 - AluY SINE Alu -12 299 1 19219 193 31 16 chrX 123778779 123780855 -53193285 - L1M1 LINE L1 -5172 2393 193 2254 134 72 10 chrX 123780855 123781258 -53192882 + MSTA LTR MaLR 1 428 0 19219 193 31 16 chrX 123781258 123781443 -53192697 - L1M1 LINE L1 -7372 193 12 1788 223 58 11 chrX 123781429 123781892 -53192248 - MSTB1-int LTR MaLR -1166 485 1 * 1584 179 49 85 chrX 123781892 123782340 -53191800 - MSTB1 LTR MaLR 0 432 1 459 305 65 43 chrX 123782396 123782860 -53191280 + MLT1H LTR MaLR 81 555 0 255 125 0 0 chrX 123783616 123783656 -53190484 + (ATGGTG)n Simple_repeat Simple_repeat 5 44 0 354 270 81 52 chrX 123784963 123785137 -53189003 - L1MC/D LINE L1 -2350 5458 5280 6712 233 40 11 chrX 123785154 123785721 -53188419 + L1MB2 LINE L1 3161 3710 -2461 2116 155 31 0 chrX 123785721 123786076 -53188064 + MER47A DNA MER2_type 1 366 0 6712 233 40 11 chrX 123786076 123786351 -53187789 + L1MB2 LINE L1 3710 3975 -2196 2336 81 0 0 chrX 123786351 123786646 -53187494 - AluSq SINE Alu -18 295 1 6712 233 40 11 chrX 123786646 123786868 -53187272 + L1MB2 LINE L1 3975 4189 -1982 240 35 0 0 chrX 123786868 123786897 -53187243 + (CA)n Simple_repeat Simple_repeat 1 29 0 6712 233 40 11 chrX 123786897 123788748 -53185392 + L1MB2 LINE L1 4189 6164 -7 454 115 35 69 chrX 123788990 123789077 -53185063 + THE1C LTR MaLR 209 292 -83 564 180 9 9 chrX 123789084 123789195 -53184945 - FLAM_C SINE Alu -32 111 1 5156 178 36 31 chrX 123789195 123790465 -53183675 + L1MC1 LINE L1 5067 6333 0 24 67 0 0 chrX 123791265 123791310 -53182830 + AT_rich Low_complexity Low_complexity 1 45 0 180 0 0 0 chrX 123791570 123791590 -53182550 + (A)n Simple_repeat Simple_repeat 1 20 0 445 212 191 68 chrX 123791611 123791904 -53182236 - L1MC4a LINE L1 -66 7742 7414 22 0 0 0 chrX 123792108 123792130 -53182010 + AT_rich Low_complexity Low_complexity 1 22 0 3552 215 44 13 chrX 123792246 123793140 -53181000 - L1M LINE L1 -748 5398 4485 917 177 27 0 chrX 123793148 123793334 -53180806 - L1 LINE L1 -2053 4093 3903 * 1481 204 38 26 chrX 123793314 123793731 -53180409 - L1 LINE L1 -1631 4515 4094 3261 210 60 13 chrX 123793963 123794664 -53179476 + MER21B LTR ERV1 129 862 -1 1056 211 40 0 chrX 123794672 123794919 -53179221 - L1 LINE L1 -2051 4095 3839 22 0 0 0 chrX 123795153 123795175 -53178965 + AT_rich Low_complexity Low_complexity 1 22 0 330 153 121 81 chrX 123795186 123795310 -53178830 - L1 LINE L1 -2944 3202 3074 632 236 70 6 chrX 123795344 123795501 -53178639 - MLT1D LTR MaLR -327 178 12 2530 143 18 5 chrX 123795541 123795941 -53178199 - LTR57 LTR ERVL -6 405 1 8953 156 8 0 chrX 123795941 123797310 -53176830 - LTR57-int LTR ERVL 0 5343 3964 3059 242 29 2 chrX 123797309 123797932 -53176208 - LTR57-int LTR ERVL -1554 3789 3150 * 683 237 34 19 chrX 123797932 123798139 -53176001 + AluJb SINE Alu 82 291 -21 24 91 0 0 chrX 123799681 123799747 -53174393 + AT_rich Low_complexity Low_complexity 1 66 0 273 247 120 87 chrX 123800122 123800272 -53173868 + MIR SINE MIR 58 212 -50 12967 147 34 28 chrX 123800379 123801964 -53172176 + Tigger1 DNA MER2_type 1 1608 -810 2246 110 0 16 chrX 123801964 123802281 -53171859 + AluSx SINE Alu 1 312 0 12967 147 34 28 chrX 123802281 123803097 -53171043 + Tigger1 DNA MER2_type 1608 2417 -1 4757 154 66 36 chrX 123803506 123804546 -53169594 + MER11C LTR ERVK 1 1071 0 2274 97 3 7 chrX 123805044 123805352 -53168788 + AluSq SINE Alu 1 307 -6 21 0 0 0 chrX 123805650 123805671 -53168469 + AT_rich Low_complexity Low_complexity 1 21 0 356 214 0 14 chrX 123805675 123805745 -53168395 - Tigger5 DNA MER2_type -4 2319 2251 28 0 0 0 chrX 123807146 123807174 -53166966 + AT_rich Low_complexity Low_complexity 1 28 0 194 91 30 0 chrX 123807371 123807404 -53166736 + GA-rich Low_complexity Low_complexity 2 35 0 5396 153 15 9 chrX 123807660 123808578 -53165562 + L1PB1 LINE L1 875 1798 -5065 * 13369 186 25 23 chrX 123808573 123811236 -53162904 + L1PB1 LINE L1 2448 5125 -1742 207 0 0 0 chrX 123811236 123811259 -53162881 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 13369 186 25 23 chrX 123811259 123813003 -53161137 + L1PB1 LINE L1 5125 6864 -3 811 217 5 38 chrX 123813684 123813868 -53160272 - FRAM SINE Alu -6 170 1 1535 122 5 0 chrX 123813904 123814118 -53160022 + THE1B LTR MaLR 150 364 0 631 300 64 52 chrX 123814270 123815070 -53159070 - L1MEc LINE L1 -4578 1818 1010 207 321 0 0 chrX 123815574 123815658 -53158482 + (TA)n Simple_repeat Simple_repeat 1 84 0 610 187 0 0 chrX 123815737 123815860 -53158280 + L1M1 LINE L1 2032 2154 -5411 1881 310 59 5 chrX 123815873 123816450 -53157690 - L1M2 LINE L1 -5568 1281 674 1804 248 60 4 chrX 123816541 123816993 -53157147 - L1M2 LINE L1 -6366 483 7 285 167 19 0 chrX 123817199 123817253 -53156887 + MLT1J2 LTR MaLR 362 416 -34 369 391 94 12 chrX 123817900 123818304 -53155836 + L2 LINE L2 1163 1599 -1715 273 287 92 67 chrX 123818304 123818499 -53155641 + L2 LINE L2 2279 2478 -836 978 184 0 6 chrX 123818658 123818832 -53155308 - Tigger1 DNA MER2_type 0 2418 2246 6288 189 20 17 chrX 123818839 123820868 -53153272 + L1MA2 LINE L1 4311 6304 0 2326 186 17 48 chrX 123820881 123821655 -53152485 + L1MA5 LINE L1 5323 6038 -262 1312 181 53 15 chrX 123821459 123821724 -53152416 + L1PB4 LINE L1 5837 6111 -45 * 300 211 0 0 chrX 123821724 123821795 -53152345 + (TG)n Simple_repeat Simple_repeat 1 71 0 228 152 0 0 chrX 123821795 123821841 -53152299 + L1PB4 LINE L1 6109 6154 -2 203 319 72 0 chrX 123822461 123822530 -53151610 - MIR SINE MIR -157 105 32 202 369 102 0 chrX 123822683 123822840 -53151300 + L3 LINE CR1 543 715 -862 939 140 0 0 chrX 123823098 123823255 -53150885 + (TA)n Simple_repeat Simple_repeat 1 157 0 420 234 121 0 chrX 123823604 123823728 -53150412 - L1ME1 LINE L1 -7 6159 6021 27 29 0 0 chrX 123823832 123823866 -53150274 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chrX 123824299 123824335 -53149805 + AT_rich Low_complexity Low_complexity 1 36 0 370 182 0 15 chrX 123825060 123825126 -53149014 + Tigger1 DNA MER2_type 2354 2418 0 273 287 92 67 chrX 123825285 123825480 -53148660 - L2 LINE L2 -836 2478 2279 386 395 94 10 chrX 123825480 123825883 -53148257 - L2 LINE L2 -1715 1599 1163 285 167 19 0 chrX 123826530 123826584 -53147556 - MLT1J2 LTR MaLR -34 416 362 1815 248 60 4 chrX 123826790 123827242 -53146898 + L1M2 LINE L1 7 483 -6366 1881 310 59 5 chrX 123827333 123827910 -53146230 + L1M2 LINE L1 674 1281 -5568 610 187 0 0 chrX 123827923 123828046 -53146094 - L1M1 LINE L1 -5411 2154 2032 207 321 0 0 chrX 123828125 123828209 -53145931 + (TA)n Simple_repeat Simple_repeat 1 84 0 617 301 55 45 chrX 123828714 123829513 -53144627 + L1ME LINE L1 841 1683 -4578 2532 135 0 0 chrX 123829665 123830029 -53144111 - THE1B LTR MaLR 0 364 1 10183 113 20 28 chrX 123830029 123831622 -53142518 - THE1B-int LTR MaLR 0 1580 1 2280 96 93 0 chrX 123831622 123831955 -53142185 - THE1B LTR MaLR 0 364 1 1444 321 54 12 chrX 123832108 123832793 -53141347 + L1MEc LINE L1 59 772 -5624 456 226 0 0 chrX 123832802 123832886 -53141254 + FLAM_A SINE Alu 41 124 -18 1528 282 90 37 chrX 123832920 123833925 -53140215 + L1MEc LINE L1 1028 2085 -4311 5136 273 49 21 chrX 123834036 123836290 -53137850 + L1MEc LINE L1 2240 4556 -1659 795 206 55 58 chrX 123836313 123836617 -53137523 - MER4D LTR ERV1 -8 895 446 227 158 0 26 chrX 123836631 123836669 -53137471 - MER4E LTR ERV1 -617 162 126 1447 156 16 24 chrX 123836696 123836946 -53137194 - MER49 LTR ERV1 -631 292 45 10317 177 57 15 chrX 123836949 123839314 -53134826 + L1MA6 LINE L1 2980 5244 -1056 1942 129 46 72 chrX 123839314 123839687 -53134453 - THE1B LTR MaLR -1 363 1 11222 97 7 10 chrX 123839687 123841272 -53132868 - THE1B-int LTR MaLR 0 1580 1 2131 128 48 20 chrX 123841274 123841626 -53132514 - THE1B LTR MaLR -2 362 1 10317 177 57 15 chrX 123841626 123842260 -53131880 + L1MA6 LINE L1 5244 6300 0 303 312 69 32 chrX 123842808 123842997 -53131143 + L1 LINE L1 3669 3864 -2282 3914 174 64 6 chrX 123843043 123843824 -53130316 - Tigger1 DNA MER2_type -6 2412 1587 * 8309 150 31 9 chrX 123843823 123845222 -53128918 - Tigger1 DNA MER2_type -984 1434 4 22 0 0 0 chrX 123845292 123845314 -53128826 + AT_rich Low_complexity Low_complexity 1 22 0 207 100 0 0 chrX 123845702 123845732 -53128408 + (TA)n Simple_repeat Simple_repeat 1 30 0 833 265 40 13 chrX 123845761 123846012 -53128128 + MLT1F1 LTR MaLR 307 546 -3 548 236 160 32 chrX 123846133 123846362 -53127778 + MIR SINE MIR 13 256 -6 228 304 31 12 chrX 123846912 123847073 -53127067 - L1ME4a LINE L1 -3 6101 5938 389 318 163 27 chrX 123847165 123847608 -53126532 - L1ME4a LINE L1 -1992 5799 5297 298 248 101 103 chrX 123847650 123847691 -53126449 - HAL1b LINE L1 -1 1347 1307 862 118 50 0 chrX 123847691 123847788 -53126352 + L1MA8 LINE L1 6119 6229 -62 243 0 0 0 chrX 123847788 123847815 -53126325 + (TG)n Simple_repeat Simple_repeat 2 28 0 862 118 50 0 chrX 123847815 123847878 -53126262 + L1MA8 LINE L1 6229 6287 -4 298 248 101 103 chrX 123847878 123848244 -53125896 - HAL1b LINE L1 -41 1307 941 259 268 8 49 chrX 123848399 123848522 -53125618 - L1ME4a LINE L1 -1976 4153 4036 374 267 27 81 chrX 123848528 123848749 -53125391 + MLT1J2 LTR MaLR 1 209 -241 369 280 59 16 chrX 123849035 123849221 -53124919 - L1ME4a LINE L1 -2197 3932 3739 * 11964 185 31 36 chrX 123849206 123851620 -53122520 + L1M1 LINE L1 1 2402 -5163 1766 242 76 9 chrX 123851868 123852318 -53121822 - MLT1D LTR MaLR -25 480 1 1890 287 67 35 chrX 123852318 123852849 -53121291 - L2 LINE L2 -1155 2159 1592 2411 64 0 13 chrX 123852849 123853161 -53120979 - AluY SINE Alu -3 308 1 1890 287 67 35 chrX 123853161 123853431 -53120709 - L2 LINE L2 -1722 1592 1332 2250 61 7 0 chrX 123853571 123853849 -53120291 - AluSp SINE Alu -25 288 9 510 347 11 6 chrX 123853954 123854130 -53120010 - L2 LINE L2 -2088 1226 1050 396 226 30 100 chrX 123854479 123854722 -53119418 - L1MEd LINE L1 -4864 1255 1083 365 325 33 27 chrX 123854770 123855099 -53119041 - L1ME LINE L1 -559 5586 5256 2335 313 62 12 chrX 123855351 123856328 -53117812 - HERV16 LTR ERVL -1900 3096 2244 945 292 8 8 chrX 123856328 123856592 -53117548 + LTR16B LTR ERVL 1 264 -200 217 244 0 0 chrX 123856701 123856746 -53117394 + CT-rich Low_complexity Low_complexity 2 46 0 438 281 99 37 chrX 123856901 123857357 -53116783 - L1ME LINE L1 -1366 4763 4280 13593 250 44 22 chrX 123857417 123864274 -53109866 - L1PA16 LINE L1 -11 7593 9 482 296 117 22 chrX 123864302 123864765 -53109375 - L1ME LINE L1 -2807 3322 2816 26 55 0 41 chrX 123864804 123864877 -53109263 + AT_rich Low_complexity Low_complexity 1 70 0 2188 99 0 20 chrX 123865057 123865361 -53108779 + AluSq SINE Alu 1 298 -15 361 312 65 44 chrX 123865369 123865665 -53108475 - L1MEd LINE L1 -4563 1566 1392 28 29 0 0 chrX 123865849 123865884 -53108256 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 123866136 123866164 -53107976 + AT_rich Low_complexity Low_complexity 1 28 0 2920 249 26 18 chrX 123868303 123869603 -53104537 - L1M4 LINE L1 -473 6516 5209 1770 90 8 0 chrX 123869614 123869903 -53104237 - AluSp SINE Alu 0 340 50 4596 190 21 8 chrX 123869905 123871096 -53103044 - L1PB4 LINE L1 -3 6153 4942 2041 289 53 57 chrX 123871150 123872073 -53102067 - L1M4 LINE L1 -5879 980 62 816 305 91 73 chrX 123872189 123872762 -53101378 - L1MEd LINE L1 -4868 1251 690 2176 98 30 0 chrX 123872762 123873058 -53101082 + AluSq SINE Alu 1 305 -8 816 305 91 73 chrX 123873058 123873135 -53101005 - L1MEd LINE L1 -5429 690 616 1418 174 55 65 chrX 123873135 123873428 -53100712 - AluJb SINE Alu -22 290 1 816 305 91 73 chrX 123873428 123873484 -53100656 - L1MEd LINE L1 -5503 616 562 1534 188 40 59 chrX 123873484 123873856 -53100284 + MLT1A1 LTR MaLR 1 365 0 816 305 91 73 chrX 123873856 123874080 -53100060 - L1MEd LINE L1 -5557 562 440 23 33 0 0 chrX 123874366 123874396 -53099744 + AT_rich Low_complexity Low_complexity 1 30 0 762 278 58 75 chrX 123874908 123875307 -53098833 + L1M4 LINE L1 157 548 -5994 * 977 194 63 40 chrX 123875288 123875541 -53098599 + L1MA2 LINE L1 26 284 -7281 * 20998 155 14 11 chrX 123875518 123880300 -53093840 + L1PA10 LINE L1 2782 7587 0 7544 172 83 4 chrX 123880304 123882939 -53091201 + L1MA2 LINE L1 4862 7723 0 2020 234 66 49 chrX 123882952 123883601 -53090539 + L1M4 LINE L1 515 1174 -5368 1116 235 82 66 chrX 123883599 123883779 -53090361 + L1M4 LINE L1 1838 2014 -4630 * 446 151 43 0 chrX 123883779 123883872 -53090268 + L1MB3 LINE L1 6084 6180 -3 1116 235 82 66 chrX 123883872 123885201 -53088939 + L1M4 LINE L1 2014 3320 -3324 1594 106 0 21 chrX 123885201 123885485 -53088655 - AluSq SINE Alu 0 332 54 1116 235 82 66 chrX 123885485 123885823 -53088317 + L1M4 LINE L1 3320 3730 -2914 1562 168 47 10 chrX 123885823 123886120 -53088020 + AluJo SINE Alu 1 308 -4 1116 235 82 66 chrX 123886120 123886161 -53087979 + L1M4 LINE L1 3730 3769 -2875 10688 199 21 15 chrX 123886191 123889734 -53084406 - L1PB3 LINE L1 0 6154 2594 10273 235 24 26 chrX 123889756 123890504 -53083636 + L1P4 LINE L1 2177 2925 -3241 2183 107 3 0 chrX 123890504 123890795 -53083345 + AluSp SINE Alu 1 292 -21 10273 235 24 26 chrX 123890795 123892643 -53081497 + L1P4 LINE L1 2925 4766 -1400 3947 127 4 61 chrX 123892643 123893346 -53080794 - MER4A LTR ERV1 -1 663 1 10273 235 24 26 chrX 123893346 123894153 -53079987 + L1P4 LINE L1 4766 5573 -593 2850 137 2 4 chrX 123894155 123894621 -53079519 - MER4C LTR ERV1 0 465 1 16067 174 69 61 chrX 123894624 123895666 -53078474 - MER4C-int LTR ERV1 0 6598 5566 2728 23 0 0 chrX 123895666 123895975 -53078165 - AluY SINE Alu -2 309 1 16067 174 69 61 chrX 123895975 123900143 -53073997 - MER4C-int LTR ERV1 -1032 5566 982 302 0 0 26 chrX 123900143 123900182 -53073958 + (TG)n Simple_repeat Simple_repeat 1 38 0 16067 174 69 61 chrX 123900182 123901172 -53072968 - MER4C-int LTR ERV1 -5616 982 1 1996 131 6 6 chrX 123901175 123901488 -53072652 - MER4C LTR ERV1 0 465 153 716 263 109 71 chrX 123901589 123902438 -53071702 + L1MEc LINE L1 1388 2269 -4127 1216 213 53 13 chrX 123902445 123902745 -53071395 - MER33 DNA MER1_type -2 322 11 950 265 191 12 chrX 123902759 123903274 -53070866 + L1MEc LINE L1 2232 2866 -3349 1647 230 5 20 chrX 123903274 123903670 -53070470 - MLT1B LTR MaLR 0 390 1 950 265 191 12 chrX 123903670 123903742 -53070398 + L1MEc LINE L1 2866 2924 -3291 1927 221 50 38 chrX 123904441 123905226 -53068914 + L1M2a LINE L1 1633 2446 -4652 * 3950 236 60 38 chrX 123905223 123905505 -53068635 + L1M2a LINE L1 3206 3480 -3687 189 0 0 0 chrX 123905505 123905526 -53068614 + (TA)n Simple_repeat Simple_repeat 2 22 0 3950 236 60 38 chrX 123905526 123906651 -53067489 + L1M2a LINE L1 3480 4645 -2522 370 282 82 41 chrX 123906778 123907080 -53067060 + L1MB7 LINE L1 4524 4845 -2322 * 385 283 33 43 chrX 123907074 123907258 -53066882 + L1MB7 LINE L1 5104 5285 -1882 2760 225 66 4 chrX 123907273 123907967 -53066173 + L1MB7 LINE L1 6453 7189 -16 5484 128 4 59 chrX 123908042 123909198 -53064942 - L1PA15 LINE L1 -6 6159 5067 2562 197 76 6 chrX 123909215 123909843 -53064297 - L1M2 LINE L1 -4700 2498 1745 2284 292 17 5 chrX 123909928 123910576 -53063564 - L1M2 LINE L1 -6566 643 1 789 215 15 31 chrX 123910630 123910890 -53063250 - L1M4 LINE L1 -918 5228 4973 947 195 70 11 chrX 123910893 123911078 -53063062 - THE1B LTR MaLR 0 364 169 3859 102 4 0 chrX 123911078 123911616 -53062524 - THE1B-int LTR MaLR -1036 544 5 1905 173 39 22 chrX 123911620 123911978 -53062162 - THE1B LTR MaLR 0 364 1 2644 246 75 27 chrX 123911978 123912684 -53061456 - L1M4 LINE L1 -1172 4974 4206 2341 125 8 16 chrX 123912684 123913051 -53061089 + THE1B LTR MaLR 1 364 0 2644 246 75 27 chrX 123913051 123913323 -53060817 - L1M4 LINE L1 -1940 4206 3949 1261 186 5 9 chrX 123913498 123913713 -53060427 - MER44D DNA MER2_type -2 603 518 1492 231 59 25 chrX 123914443 123914954 -53059186 - L1M4 LINE L1 -2179 3967 3440 1008 78 0 0 chrX 123915016 123915144 -53058996 - THE1A LTR MaLR 0 355 228 6889 59 4 4 chrX 123915144 123916140 -53058000 - L1PA8 LINE L1 -4 6168 5171 1971 113 7 0 chrX 123916140 123916449 -53057691 + L1PA8 LINE L1 4862 5172 -974 1625 119 8 0 chrX 123916449 123916685 -53057455 - THE1A LTR MaLR -117 238 1 11168 101 8 2 chrX 123916685 123918254 -53055886 - THE1A-int LTR MaLR 0 1580 3 2497 110 3 0 chrX 123918256 123918610 -53055530 - THE1A LTR MaLR 0 355 1 1105 178 23 30 chrX 123918610 123919112 -53055028 - L1MA4 LINE L1 -73 7646 6879 * 3091 194 10 69 chrX 123919100 123919981 -53054159 - L1MA4 LINE L1 -1213 6352 5524 611 243 26 11 chrX 123919988 123920177 -53053963 - L1MA4 LINE L1 -3701 3864 3673 1934 154 57 0 chrX 123920184 123920502 -53053638 - L1PA16 LINE L1 -9 6157 5822 1722 110 11 4 chrX 123920502 123920766 -53053374 + L1P4 LINE L1 5477 5742 -424 6856 254 75 36 chrX 123920775 123923400 -53050740 - L1MA4 LINE L1 -3890 3675 256 1579 292 74 11 chrX 123923452 123924383 -53049757 - L1M4 LINE L1 -2787 3359 2362 * 6096 170 17 13 chrX 123924379 123926385 -53047755 - L1MA2 LINE L1 0 6304 4291 594 244 45 4 chrX 123926363 123926605 -53047535 - L1M4 LINE L1 -3751 2395 2144 * 820 313 68 40 chrX 123926672 123927071 -53047069 + L1PA13 LINE L1 1044 1453 -5334 4779 146 27 30 chrX 123927071 123928252 -53045888 + L1PA15 LINE L1 4987 6165 0 592 235 0 8 chrX 123928495 123928627 -53045513 - MSTC LTR MaLR -297 131 1 510 46 0 0 chrX 123928662 123928727 -53045413 + (TG)n Simple_repeat Simple_repeat 2 66 0 2499 250 89 23 chrX 123928792 123929770 -53044370 + L1M4c LINE L1 719 1912 -4651 1775 158 17 22 chrX 123929783 123930130 -53044010 - MER4A LTR ERV1 0 664 261 471 161 54 0 chrX 123930130 123930223 -53043917 - MER4A LTR ERV1 -566 98 1 2132 114 7 10 chrX 123930253 123930561 -53043579 - AluSc SINE Alu -2 307 1 15248 117 85 52 chrX 123930561 123932408 -53041732 - MER4A-int LTR ERV1 -1 6597 4813 2105 142 33 28 chrX 123932408 123932768 -53041372 + THE1B LTR MaLR 3 364 0 15248 117 85 52 chrX 123932768 123933084 -53041056 - MER4A-int LTR ERV1 -1785 4813 4509 1934 150 42 31 chrX 123933084 123933444 -53040696 - THE1B LTR MaLR 0 364 1 15248 117 85 52 chrX 123933444 123937025 -53037115 - MER4A-int LTR ERV1 -2089 4509 3 1778 165 6 22 chrX 123937030 123937381 -53036759 - MER4A LTR ERV1 0 664 261 621 135 21 0 chrX 123937381 123937477 -53036663 - MER4A LTR ERV1 -566 98 1 1217 251 46 42 chrX 123937477 123938316 -53035824 + L1M3 LINE L1 1810 2741 -3641 325 0 0 0 chrX 123938508 123938544 -53035596 + U1 snRNA snRNA 1 36 -129 21 0 0 0 chrX 123938590 123938611 -53035529 + AT_rich Low_complexity Low_complexity 1 21 0 7159 245 83 18 chrX 123939661 123942657 -53031483 + L1M3 LINE L1 2734 5930 -486 1312 291 71 11 chrX 123944576 123945263 -53028877 - L1MB3 LINE L1 -22 6161 5401 2128 191 52 54 chrX 123945265 123945420 -53028720 + L1MB5 LINE L1 5413 5567 -607 1104 260 119 6 chrX 123945420 123945774 -53028366 - MSTD LTR MaLR 0 396 3 2128 191 52 54 chrX 123945774 123946208 -53027932 + L1MB5 LINE L1 5567 6001 -173 1656 169 64 25 chrX 123946216 123946577 -53027563 + THE1C LTR MaLR 1 375 0 9120 144 9 49 chrX 123946584 123948223 -53025917 + THE1C-int LTR MaLR 8 1580 0 247 231 37 46 chrX 123948205 123948223 -53025917 + L1MB5 LINE L1 5989 6006 -168 * 1479 148 131 41 chrX 123948223 123948567 -53025573 + THE1C LTR MaLR 1 375 0 247 231 37 46 chrX 123948567 123948656 -53025484 + L1MB5 LINE L1 6006 6095 -79 238 296 79 13 chrX 123948675 123948827 -53025313 + L1M4 LINE L1 2701 2862 -3284 840 270 54 9 chrX 123948833 123949274 -53024866 + L1M4 LINE L1 2891 3351 -2795 * 3822 207 46 5 chrX 123949273 123950127 -53024013 + L1MC1 LINE L1 5427 6315 -18 195 42 0 0 chrX 123950146 123950170 -53023970 + (CA)n Simple_repeat Simple_repeat 1 24 0 26 93 0 0 chrX 123950313 123950388 -53023752 + AT_rich Low_complexity Low_complexity 1 75 0 1378 159 15 11 chrX 123950412 123950676 -53023464 - L1MA7 LINE L1 0 6291 6027 679 276 43 24 chrX 123950697 123951067 -53023073 + L1M4 LINE L1 3366 3742 -2404 593 355 47 17 chrX 123951126 123951532 -53022608 + L1MEc LINE L1 37 454 -5942 7691 18 1 1 chrX 123951868 123953514 -53020626 + L1PA3 LINE L1 4504 6149 -6 25 0 0 0 chrX 123953514 123953539 -53020601 + AT_rich Low_complexity Low_complexity 1 25 0 707 313 66 39 chrX 123955354 123956154 -53017986 - L1M4 LINE L1 -1810 4336 3515 1057 275 55 20 chrX 123956187 123956627 -53017513 - L1ME1 LINE L1 -9 6157 5703 4649 175 23 15 chrX 123956640 123957526 -53016614 - LTR49-int LTR ERV1 -5677 1081 189 1184 239 82 11 chrX 123957525 123957710 -53016430 - LTR49-int LTR ERV1 -4107 2224 2053 * 334 31 0 125 chrX 123957710 123957774 -53016366 - L1PA6 LINE L1 0 6154 6099 1184 239 82 11 chrX 123957774 123957943 -53016197 - LTR49-int LTR ERV1 -4278 2053 1845 285 29 0 0 chrX 123957981 123958015 -53016125 + (T)n Simple_repeat Simple_repeat 1 34 0 1881 170 81 54 chrX 123958082 123958607 -53015533 - LTR49-int LTR ERV1 -5912 686 94 5088 189 13 10 chrX 123958620 123960637 -53013503 + L1PB3 LINE L1 4130 6147 -7 3909 175 109 84 chrX 123960752 123962089 -53012051 + MER57-int LTR ERV1 3408 4777 -2760 11296 205 25 17 chrX 123962131 123964213 -53009927 + L1PA13 LINE L1 2 2099 -4688 * 25482 142 9 16 chrX 123964204 123969531 -53004609 + L1PA8 LINE L1 882 6169 -3 241 204 20 31 chrX 123969535 123969573 -53004567 + A-rich Low_complexity Low_complexity 6 43 -59 2879 144 6 6 chrX 123969573 123970046 -53004094 + L1PB3 LINE L1 5675 6147 -7 241 204 20 31 chrX 123970046 123970105 -53004035 + A-rich Low_complexity Low_complexity 43 102 0 1337 243 25 9 chrX 123970125 123970446 -53003694 - L1MCa LINE L1 -6097 329 4 310 321 123 28 chrX 123970553 123970765 -53003375 + MIR SINE MIR 31 262 0 245 250 49 28 chrX 123970942 123971086 -53003054 - Charlie5 DNA MER1_type -232 2380 2234 779 308 32 13 chrX 123971201 123971728 -53002412 - L1MC/D LINE L1 -631 5728 5188 216 0 0 0 chrX 123971728 123971752 -53002388 + (T)n Simple_repeat Simple_repeat 1 24 0 13321 201 38 11 chrX 123973044 123975356 -52998784 - L1PB1 LINE L1 0 6867 4619 2035 142 10 0 chrX 123975356 123975665 -52998475 - AluSx SINE Alu 0 312 1 13321 201 38 11 chrX 123975665 123978237 -52995903 - L1PB1 LINE L1 -2248 4619 1734 971 184 11 0 chrX 123978340 123978514 -52995626 - L1PB1 LINE L1 -6687 176 1 186 43 0 0 chrX 123979269 123979292 -52994848 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 827 167 43 31 chrX 124030004 124030166 -52943974 + HERVL74 LTR ERVL 3910 4073 -1612 * 1750 212 80 96 chrX 124030154 124030719 -52943421 + HERVL74 LTR ERVL 4586 5141 -544 1258 176 3 109 chrX 124030793 124030869 -52943271 - MER54B LTR ERVL 0 793 711 1856 148 0 7 chrX 124030869 124031159 -52942981 - AluSx SINE Alu -24 288 1 1258 176 3 109 chrX 124031159 124031394 -52942746 - MER54B LTR ERVL -82 711 515 212 154 0 0 chrX 124031396 124031435 -52942705 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 666 296 11 15 chrX 124031574 124031838 -52942302 + L1M4 LINE L1 3243 3505 -2641 331 325 30 0 chrX 124031850 124032047 -52942093 - L1M4 LINE L1 -2646 3500 3298 5228 219 43 31 chrX 124032141 124034573 -52939567 - L1PB4 LINE L1 -1 6224 35 21 57 0 0 chrX 124035280 124035315 -52938825 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chrX 124035350 124035374 -52938766 + (TA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 124035980 124036003 -52938137 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chrX 124036260 124036288 -52937852 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 124036428 124036460 -52937680 + AT_rich Low_complexity Low_complexity 1 32 0 260 188 43 29 chrX 124036932 124037070 -52937070 + (TATAA)n Simple_repeat Simple_repeat 1 140 0 2223 62 41 3 chrX 124038089 124038381 -52935759 - AluY SINE Alu -8 303 1 22 0 0 0 chrX 124039112 124039134 -52935006 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chrX 124039244 124039288 -52934852 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chrX 124039343 124039365 -52934775 + AT_rich Low_complexity Low_complexity 1 22 0 231 36 0 0 chrX 124039479 124039507 -52934633 + (TA)n Simple_repeat Simple_repeat 2 29 0 1405 224 88 0 chrX 124039558 124039911 -52934229 - L1 LINE L1 -1188 4958 4575 4011 195 37 31 chrX 124039914 124040334 -52933806 + L1MA10 LINE L1 5374 5790 -544 351 0 0 0 chrX 124040334 124040373 -52933767 + (CA)n Simple_repeat Simple_repeat 2 40 0 4011 195 37 31 chrX 124040373 124040896 -52933244 + L1MA10 LINE L1 5790 6323 -11 831 138 6 48 chrX 124041210 124041377 -52932763 - L1MB1 LINE L1 -1 6167 6008 2033 95 0 28 chrX 124041547 124041832 -52932308 + AluY SINE Alu 3 279 -32 26 0 0 0 chrX 124042120 124042146 -52931994 + AT_rich Low_complexity Low_complexity 1 26 0 3630 126 2 2 chrX 124042314 124042836 -52931304 + MER1A DNA MER1_type 8 529 0 1817 131 51 4 chrX 124043061 124043335 -52930805 - AluSx SINE Alu -25 287 1 219 280 126 21 chrX 124044260 124044403 -52929737 - L3 LINE CR1 -64 1513 1356 25 31 0 0 chrX 124044467 124044499 -52929641 + AT_rich Low_complexity Low_complexity 1 32 0 3085 201 21 13 chrX 124045064 124045744 -52928396 - L1MB1 LINE L1 -7 6863 6179 1772 202 36 8 chrX 124045789 124046175 -52927965 - L1MA9 LINE L1 -50 6262 5866 * 2363 209 44 30 chrX 124046170 124047018 -52927122 + L1MA9 LINE L1 5029 5885 -427 3662 219 43 29 chrX 124047020 124048165 -52925975 - L1MB1 LINE L1 -743 6105 5013 1149 158 74 11 chrX 124048166 124048609 -52925531 - L1MA9 LINE L1 0 6312 5710 1156 155 0 5 chrX 124048613 124048819 -52925321 - L1MA9 LINE L1 -1338 4808 4604 4104 174 24 38 chrX 124048821 124049701 -52924439 - MER11C LTR ERVK 0 1071 204 483 252 29 0 chrX 124049821 124049960 -52924180 + L1 LINE L1 2642 2784 -3362 * 750 203 71 6 chrX 124049948 124050130 -52924010 + L1 LINE L1 3788 3981 -2165 3494 185 31 46 chrX 124050142 124051129 -52923011 - L1MB1 LINE L1 -3815 3033 2065 5716 171 18 17 chrX 124051135 124052090 -52922050 - L1PB2 LINE L1 -2 6149 5196 237 65 0 0 chrX 124052090 124052121 -52922019 + (ATG)n Simple_repeat Simple_repeat 2 32 0 5716 171 18 17 chrX 124052121 124052445 -52921695 - L1PB2 LINE L1 -955 5196 4874 1445 18 0 0 chrX 124052445 124052613 -52921527 - L1PA2 LINE L1 -3 6152 5985 5716 171 18 17 chrX 124052613 124053127 -52921013 - L1PB2 LINE L1 -1277 4874 4362 5005 244 55 24 chrX 124053111 124055073 -52919067 - L1MB1 LINE L1 -4791 2058 1 * 509 380 119 3 chrX 124055110 124055455 -52918685 - L3 LINE CR1 -670 907 523 1696 182 24 6 chrX 124055457 124055786 -52918354 + MER47A DNA MER2_type 28 362 -4 28 48 0 0 chrX 124055977 124056019 -52918121 + AT_rich Low_complexity Low_complexity 1 42 0 3971 220 12 10 chrX 124056045 124056962 -52917178 + L1P LINE L1 4156 5074 -1072 25 31 0 0 chrX 124057166 124057198 -52916942 + AT_rich Low_complexity Low_complexity 1 32 0 5314 150 11 0 chrX 124057254 124058381 -52915759 - L1PA16 LINE L1 -9 6157 5023 1048 130 49 5 chrX 124058381 124058561 -52915579 - L1MA3 LINE L1 0 6305 6113 890 285 37 12 chrX 124059051 124059293 -52914847 - MER76 LTR ERV 0 688 441 1728 184 25 50 chrX 124059316 124059712 -52914428 + MLT1B LTR MaLR 1 386 -4 1646 193 43 33 chrX 124059717 124060085 -52914055 - MLT1B LTR MaLR -18 372 1 9344 135 19 0 chrX 124060174 124062503 -52911637 + L1PA10 LINE L1 3788 6165 -3 1038 217 4 21 chrX 124062507 124062781 -52911359 - MER76 LTR ERV -327 361 1 195 441 35 18 chrX 124063009 124063238 -52910902 - L3 LINE CR1 -1281 296 64 21 36 0 0 chrX 124063927 124063955 -52910185 + AT_rich Low_complexity Low_complexity 1 28 0 1958 93 3 35 chrX 124065138 124065428 -52908712 - AluSx SINE Alu -11 301 21 553 135 31 10 chrX 124067323 124067419 -52906721 + MER4A LTR ERV1 1 98 -566 * 1575 133 8 79 chrX 124067415 124067790 -52906350 + MER4A LTR ERV1 257 663 -1 2425 231 49 4 chrX 124067793 124068532 -52905608 - L1 LINE L1 -2535 3611 2840 * 4118 223 27 14 chrX 124068531 124068789 -52905351 + L1MB1 LINE L1 4092 4345 -1801 1746 196 79 12 chrX 124068789 124069217 -52904923 + MSTB2 LTR MaLR 1 457 0 4118 223 27 14 chrX 124069217 124069991 -52904149 + L1MB1 LINE L1 4345 5137 -1009 2012 217 49 2 chrX 124069994 124070460 -52903680 + L1MB1 LINE L1 5681 6168 0 495 0 0 0 chrX 124070906 124070961 -52903179 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 690 338 49 56 chrX 124071458 124072011 -52902129 - LTR67 LTR ERVL 0 557 9 1367 215 101 3 chrX 124072197 124072513 -52901627 + MER7A DNA MER2_type 1 345 -1 5439 36 0 0 chrX 124072526 124073198 -52900942 - L1PA3 LINE L1 -757 5389 4718 6549 22 0 3 chrX 124073198 124073962 -52900178 + L1PA3 LINE L1 5390 6152 -3 295 168 7 15 chrX 124074195 124074272 -52899868 + L1MA8 LINE L1 6226 6291 0 227 256 23 98 chrX 124075395 124075528 -52898612 - MIR3 SINE MIR -14 194 72 22 56 0 0 chrX 124075647 124075683 -52898457 + AT_rich Low_complexity Low_complexity 1 36 0 2042 147 13 21 chrX 124075683 124076071 -52898069 - L1MA2 LINE L1 0 6304 5920 24 85 0 0 chrX 124076319 124076378 -52897762 + AT_rich Low_complexity Low_complexity 1 59 0 414 110 0 14 chrX 124076378 124076451 -52897689 - L1PB3 LINE L1 -1 6153 6082 3342 171 23 17 chrX 124076451 124076766 -52897374 - L1PB3 LINE L1 -432 5722 5411 2570 101 14 0 chrX 124076766 124077114 -52897026 + THE1A LTR MaLR 1 353 -2 11299 101 7 2 chrX 124077116 124078688 -52895452 + THE1A-int LTR MaLR 1 1580 0 2451 114 0 25 chrX 124078691 124079052 -52895088 + THE1A LTR MaLR 4 355 0 3342 171 23 17 chrX 124079052 124079825 -52894315 - L1PB3 LINE L1 -744 5410 4618 212 344 0 0 chrX 124080489 124080550 -52893590 + CT-rich Low_complexity Low_complexity 4 64 0 410 230 40 90 chrX 124080956 124081156 -52892984 + L1MCc LINE L1 41 230 -6193 567 253 65 0 chrX 124081180 124081334 -52892806 + L1ME1 LINE L1 5977 6140 -26 253 305 49 12 chrX 124081842 124081924 -52892216 - L2 LINE L2 -19 3294 3210 427 316 0 26 chrX 124082140 124082295 -52891845 - MIR SINE MIR 0 262 112 252 393 67 7 chrX 124082575 124082710 -52891430 + MIR3 SINE MIR 3 145 -63 1568 150 53 47 chrX 124082990 124083301 -52890839 + L1MA7 LINE L1 5923 6238 -53 1750 179 3 0 chrX 124083301 124083597 -52890543 + AluJb SINE Alu 1 297 -15 1568 150 53 47 chrX 124083597 124083646 -52890494 + L1MA7 LINE L1 6238 6285 -6 1008 237 0 111 chrX 124083674 124084024 -52890116 - MLT1A2 LTR MaLR -11 363 53 1602 173 18 3 chrX 124084320 124084604 -52889536 - AluJb SINE Alu -24 288 1 300 53 0 0 chrX 124085818 124085856 -52888284 + (TG)n Simple_repeat Simple_repeat 1 38 0 945 330 84 13 chrX 124086136 124086784 -52887356 - L2 LINE L2 0 3313 2616 2414 246 82 54 chrX 124086796 124087002 -52887138 + L1M4 LINE L1 2306 2505 -3641 2035 97 3 37 chrX 124087002 124087300 -52886840 + AluSq SINE Alu 1 288 -25 2414 246 82 54 chrX 124087300 124088355 -52885785 + L1M4 LINE L1 2505 3603 -2543 996 236 26 49 chrX 124088479 124088742 -52885398 + L1M4 LINE L1 4699 4954 -1192 2106 108 0 0 chrX 124088742 124089029 -52885111 + AluSx SINE Alu 9 295 -17 996 236 26 49 chrX 124089029 124089112 -52885028 + L1M4 LINE L1 4954 5037 -1109 * 3014 53 10 1 chrX 124089109 124089628 -52884512 - L1P3 LINE L1 -650 5504 4984 6625 91 26 1 chrX 124089628 124090567 -52883573 + L1P3 LINE L1 4027 4988 -1158 4417 261 65 14 chrX 124090566 124091874 -52882266 - L1MB5 LINE L1 -343 5831 4343 * 2373 122 27 61 chrX 124091874 124092317 -52881823 - MSTA LTR MaLR 0 428 1 4417 261 65 14 chrX 124092317 124093321 -52880819 - L1MB5 LINE L1 -1831 4343 3392 1233 95 0 0 chrX 124093334 124093492 -52880648 - AluY SINE Alu -20 291 134 2771 19 0 0 chrX 124093495 124093806 -52880334 - AluY SINE Alu 0 311 1 14196 195 28 13 chrX 124094000 124094323 -52879817 - L1PB1 LINE L1 -1 6866 6549 423 38 0 0 chrX 124094323 124094376 -52879764 + (TG)n Simple_repeat Simple_repeat 1 53 0 14196 195 28 13 chrX 124094376 124096127 -52878013 - L1PB1 LINE L1 -318 6549 4826 1822 152 3 37 chrX 124096127 124096450 -52877690 - AluSx SINE Alu 0 312 1 14196 195 28 13 chrX 124096450 124099354 -52874786 - L1PB1 LINE L1 -2041 4826 1733 6169 60 6 5 chrX 124099354 124100133 -52874007 + LTR17 LTR ERV1 1 780 0 3228 146 19 18 chrX 124100133 124100840 -52873300 - L1PB1 LINE L1 -5372 1491 637 1197 144 0 5 chrX 124100843 124101044 -52873096 - L1PB1 LINE L1 -6663 200 1 15972 199 51 26 chrX 124101299 124102901 -52871239 - L1 LINE L1 -2359 5206 3646 2094 127 19 38 chrX 124102901 124103270 -52870870 - THE1B LTR MaLR -2 362 1 9645 124 39 32 chrX 124103270 124104839 -52869301 - THE1B-int LTR MaLR 0 1580 1 2127 157 11 24 chrX 124104839 124105208 -52868932 - THE1B LTR MaLR 0 364 1 15972 199 51 26 chrX 124105208 124105614 -52868526 - L1 LINE L1 -3919 3646 3252 1846 152 0 4 chrX 124105614 124105891 -52868249 - AluSx SINE Alu -18 294 19 15972 199 51 26 chrX 124105891 124108849 -52865291 - L1 LINE L1 -4313 3252 100 243 0 0 0 chrX 124108849 124108876 -52865264 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 15972 199 51 26 chrX 124108876 124108957 -52865183 - L1 LINE L1 -7465 100 23 22 0 0 0 chrX 124108981 124109003 -52865137 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chrX 124109470 124109494 -52864646 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chrX 124110184 124110238 -52863902 + AT_rich Low_complexity Low_complexity 1 54 0 246 287 90 16 chrX 124110543 124110665 -52863475 - L1ME4a LINE L1 0 6121 5991 575 293 79 25 chrX 124110740 124111233 -52862907 - L1ME4a LINE L1 -268 5853 5327 23 0 0 0 chrX 124111353 124111376 -52862764 + AT_rich Low_complexity Low_complexity 1 23 0 444 216 16 49 chrX 124111436 124111621 -52862519 + (TA)n Simple_repeat Simple_repeat 2 180 0 232 206 15 20 chrX 124111629 124111726 -52862414 + L1MC4 LINE L1 2006 6988 -1334 703 212 31 52 chrX 124111956 124112149 -52861991 + MER58A DNA MER1_type 36 224 0 18121 35 0 1 chrX 124112518 124115485 -52858655 - L1PA2 LINE L1 -6 6149 3184 6048 28 0 1 chrX 124115485 124116233 -52857907 + L1PA2 LINE L1 2449 3195 -2951 28 71 0 0 chrX 124116833 124116889 -52857251 + AT_rich Low_complexity Low_complexity 1 56 0 1481 212 10 14 chrX 124117391 124117688 -52856452 - AluJo SINE Alu -16 296 1 584 229 57 14 chrX 124117809 124117949 -52856191 - L1MB8 LINE L1 -132 6046 5901 250 303 0 0 chrX 124118008 124118084 -52856056 + GA-rich Low_complexity Low_complexity 3 78 0 2828 208 41 78 chrX 124118683 124119585 -52854555 - L1MB7 LINE L1 0 6184 5316 2005 88 21 0 chrX 124119725 124120008 -52854132 - AluY SINE Alu -19 292 4 410 225 18 0 chrX 124120255 124120366 -52853774 - L1MB7 LINE L1 -823 5323 5211 1368 205 24 18 chrX 124120385 124120726 -52853414 - L1MB1 LINE L1 -1 6167 5825 21 71 0 0 chrX 124121047 124121089 -52853051 + AT_rich Low_complexity Low_complexity 1 42 0 25 75 0 0 chrX 124121371 124121424 -52852716 + AT_rich Low_complexity Low_complexity 1 53 0 41954 52 9 1 chrX 124121450 124127551 -52846589 - L1PA4 LINE L1 -5 6150 4 1218 306 63 14 chrX 124127895 124128454 -52845686 + L1MB1 LINE L1 929 1514 -5949 14035 185 17 8 chrX 124128493 124133596 -52840544 + L1MA1 LINE L1 2593 7721 0 1993 132 10 7 chrX 124133653 124133963 -52840177 + AluSx SINE Alu 1 311 -1 7044 230 65 14 chrX 124133963 124135389 -52838751 + L1MB1 LINE L1 4543 6123 -1464 315 49 0 0 chrX 124135389 124135430 -52838710 + (CA)n Simple_repeat Simple_repeat 2 42 0 7044 230 65 14 chrX 124135430 124136213 -52837927 + L1MB1 LINE L1 6123 6865 -722 2160 177 3 0 chrX 124136215 124136583 -52837557 - L1P LINE L1 -1777 4369 4001 2903 134 15 0 chrX 124136583 124137052 -52837088 + L1PA13 LINE L1 5684 6160 -3 2572 219 11 4 chrX 124137054 124137606 -52836534 + L1MB1 LINE L1 6852 7407 -180 1210 265 49 63 chrX 124137710 124138220 -52835920 - MLT1D LTR MaLR 0 505 3 358 288 27 9 chrX 124138253 124138364 -52835776 - MLT1G1 LTR MaLR -451 144 32 201 74 0 0 chrX 124138849 124138876 -52835264 + (CATTT)n Simple_repeat Simple_repeat 2 28 0 4385 176 49 57 chrX 124139430 124140510 -52833630 - MER11C LTR ERVK 0 1071 1 207 0 0 0 chrX 124140551 124140574 -52833566 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 640 253 13 6 chrX 124140584 124140742 -52833398 - AluJb SINE Alu -25 287 129 48 18 0 0 chrX 124140945 124141000 -52833140 + AT_rich Low_complexity Low_complexity 1 55 0 200 35 35 0 chrX 124142985 124143014 -52831126 + (CTAG)n Simple_repeat Simple_repeat 2 31 0 37 62 0 0 chrX 124143181 124143246 -52830894 + AT_rich Low_complexity Low_complexity 1 65 0 601 279 14 0 chrX 124143511 124143658 -52830482 + MER5B DNA MER1_type 7 155 -23 1166 261 85 5 chrX 124143764 124144200 -52829940 - Charlie4a DNA MER1_type 0 508 38 23 33 0 0 chrX 124144697 124144727 -52829413 + AT_rich Low_complexity Low_complexity 1 30 0 13694 211 40 30 chrX 124145370 124145725 -52828415 - L1MA8 LINE L1 -462 6850 6500 2199 114 16 0 chrX 124145725 124146033 -52828107 - AluSq SINE Alu 0 313 1 13694 211 40 30 chrX 124146033 124146207 -52827933 - L1MA8 LINE L1 -812 6500 6329 2171 118 3 0 chrX 124146207 124146503 -52827637 - AluSp SINE Alu -16 297 1 13694 211 40 30 chrX 124146503 124151458 -52822682 - L1MA8 LINE L1 -983 6329 1588 331 268 103 0 chrX 124152654 124152751 -52821389 - L1M4b LINE L1 -6746 113 7 988 275 120 15 chrX 124152774 124153374 -52820766 - L1M4 LINE L1 -1419 4727 4065 205 152 0 0 chrX 124154731 124154764 -52819376 + (TG)n Simple_repeat Simple_repeat 2 34 0 217 324 70 33 chrX 124154782 124154995 -52819145 + L2 LINE L2 2170 2390 -924 2050 223 75 4 chrX 124155390 124155860 -52818280 + MLT1D LTR MaLR 3 505 0 47 44 0 0 chrX 124155891 124155959 -52818181 + AT_rich Low_complexity Low_complexity 1 68 0 373 339 54 43 chrX 124156171 124156360 -52817780 + L2 LINE L2 2183 2377 -937 6584 54 0 0 chrX 124156360 124157180 -52816960 + L1PA7 LINE L1 5329 6148 -6 373 339 54 43 chrX 124157180 124157267 -52816873 + L2 LINE L2 2377 2462 -852 231 274 0 0 chrX 124157264 124157315 -52816825 - L2 LINE L2 0 3313 3263 * 1022 103 14 0 chrX 124157316 124157462 -52816678 + L1P3 LINE L1 5575 5722 -432 33 43 0 0 chrX 124157476 124157523 -52816617 + AT_rich Low_complexity Low_complexity 1 47 0 482 237 57 99 chrX 124157836 124158119 -52816021 + L1ME LINE L1 5401 5671 -450 6463 149 32 25 chrX 124158299 124159521 -52814619 + Tigger3b DNA MER2_type 2 1231 0 1244 176 59 139 chrX 124159567 124159838 -52814302 - MLT2B1 LTR ERVL -69 345 111 2282 93 0 10 chrX 124159838 124160138 -52814002 - AluSq SINE Alu -16 297 1 1244 176 59 139 chrX 124160138 124160241 -52813899 - MLT2B1 LTR ERVL -303 111 1 3931 192 23 35 chrX 124160241 124161079 -52813061 - ERVL-B1 LTR ERVL -7 5757 4930 1290 219 4 0 chrX 124161110 124161384 -52812756 - L1M4 LINE L1 -2053 4093 3819 653 72 0 0 chrX 124161381 124161464 -52812676 - L1P4 LINE L1 -457 5709 5627 * 423 316 89 51 chrX 124161464 124161834 -52812306 + L2 LINE L2 2882 3265 -48 1695 146 37 12 chrX 124162603 124162926 -52811214 + L1MA3 LINE L1 5975 6305 0 800 215 19 187 chrX 124162927 124163141 -52810999 - MLT1A2 LTR MaLR -24 350 172 663 224 17 40 chrX 124163179 124163206 -52810934 - MLT1A2 LTR MaLR -204 170 144 2096 139 58 0 chrX 124163206 124163550 -52810590 - THE1B LTR MaLR 0 364 1 663 224 17 40 chrX 124163550 124163696 -52810444 - MLT1A2 LTR MaLR -230 144 1 185 327 73 0 chrX 124163732 124163787 -52810353 + MIR SINE MIR 114 172 -90 24 0 0 0 chrX 124164474 124164498 -52809642 + AT_rich Low_complexity Low_complexity 1 24 0 698 296 32 8 chrX 124165223 124165473 -52808667 - MIR SINE MIR -3 259 4 365 272 63 23 chrX 124165793 124165984 -52808156 - MIR SINE MIR -34 228 32 246 237 72 41 chrX 124166147 124166244 -52807896 - MLT1J1 LTR MaLR 0 446 347 * 366 275 45 20 chrX 124166240 124166425 -52807715 - MLT1I LTR MaLR -145 301 107 1011 168 0 0 chrX 124166665 124166885 -52807255 + (TA)n Simple_repeat Simple_repeat 1 220 0 1587 176 29 35 chrX 124167769 124168110 -52806030 - MER44D DNA MER2_type 0 609 1 823 235 0 21 chrX 124168329 124168516 -52805624 - AluJo SINE Alu -16 296 114 458 119 50 20 chrX 124168590 124168691 -52805449 + L1M4 LINE L1 2620 2723 -3423 * 845 202 28 77 chrX 124168675 124168761 -52805379 - L1MA7 LINE L1 -296 5995 5906 2271 99 0 0 chrX 124168761 124169055 -52805085 + AluSx SINE Alu 1 294 -18 845 202 28 77 chrX 124169055 124169216 -52804924 - L1MA7 LINE L1 -385 5906 5760 * 1005 152 12 0 chrX 124169206 124169371 -52804769 + L1M2 LINE L1 5643 5809 -482 347 0 23 0 chrX 124170090 124170133 -52804007 + (TA)n Simple_repeat Simple_repeat 2 45 0 1924 134 7 0 chrX 124170135 124170412 -52803728 - AluSg SINE Alu -31 279 1 1498 265 76 20 chrX 124170620 124171492 -52802648 - L1M4c LINE L1 -3381 3576 2655 1550 290 88 50 chrX 124171712 124172575 -52801565 - L1M4c LINE L1 -5672 1187 217 622 166 58 112 chrX 124172624 124172829 -52801311 + MLT1A1 LTR MaLR 1 194 -171 397 258 67 0 chrX 124172884 124173004 -52801136 + MLT1A1 LTR MaLR 181 308 -66 2456 156 19 0 chrX 124173004 124173428 -52800712 + L1PB4 LINE L1 5581 6012 -144 320 332 68 39 chrX 124173428 124173838 -52800302 - L1M4 LINE L1 -1317 4829 4408 3666 197 63 34 chrX 124173848 124174812 -52799328 - L1MC3 LINE L1 -21 7764 6773 506 349 16 8 chrX 124174901 124175156 -52798984 - L1M4 LINE L1 -1815 4331 4075 595 321 15 74 chrX 124175200 124175593 -52798547 + L2 LINE L2 2944 3313 0 229 303 14 76 chrX 124175647 124175792 -52798348 + L2 LINE L2 3154 3289 -24 215 337 11 32 chrX 124175950 124176045 -52798095 + L2 LINE L2 2877 2969 -345 5411 222 38 5 chrX 124176056 124178454 -52795686 - L1MC1 LINE L1 0 6613 4134 1481 214 39 21 chrX 124178487 124178824 -52795316 - MLT1A1 LTR MaLR -22 343 1 4739 247 92 24 chrX 124178825 124180789 -52793351 - L1MC1 LINE L1 -2289 4137 2307 1833 191 34 3 chrX 124180789 124181144 -52792996 + MER47A DNA MER2_type 1 366 0 4739 247 92 24 chrX 124181144 124182796 -52791344 - L1MC1 LINE L1 -4119 2307 4 344 309 22 37 chrX 124182888 124183024 -52791116 + L2 LINE L2 3180 3313 0 237 153 0 68 chrX 124183695 124183754 -52790386 - HSMAR1 DNA Mariner 0 1287 1233 25 31 0 0 chrX 124184035 124184067 -52790073 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chrX 124185229 124185260 -52788880 + AT_rich Low_complexity Low_complexity 1 31 0 1591 161 46 4 chrX 124185835 124186115 -52788025 + AluJb SINE Alu 1 292 -20 4626 68 5 16 chrX 124186328 124186961 -52787179 + L1PA8 LINE L1 5547 6172 0 259 200 0 40 chrX 124189042 124189117 -52785023 - L1MD2 LINE L1 0 6359 6288 543 215 56 0 chrX 124189131 124189275 -52784865 - L1MD1 LINE L1 -168 6074 5923 5355 234 78 16 chrX 124189279 124191090 -52783050 + L1M4 LINE L1 5 2023 -4623 961 274 32 3 chrX 124191255 124191624 -52782516 + L1M4 LINE L1 2292 2671 -3975 669 291 28 53 chrX 124191623 124191985 -52782155 + L1M4 LINE L1 3672 4025 -2619 * 2052 114 69 9 chrX 124191985 124192335 -52781805 - THE1C LTR MaLR 0 375 5 669 291 28 53 chrX 124192335 124192371 -52781769 + L1M4 LINE L1 4025 4060 -2584 1973 143 0 0 chrX 124192383 124192677 -52781463 + AluSq SINE Alu 3 296 -17 2073 134 3 0 chrX 124192717 124193024 -52781116 + AluY SINE Alu 1 308 -3 820 254 87 17 chrX 124193080 124193379 -52780761 + L1PBa LINE L1 9 328 -6535 1374 180 133 26 chrX 124193382 124193721 -52780419 - THE1C LTR MaLR 0 375 1 1180 111 6 17 chrX 124193721 124193901 -52780239 - THE1C-int LTR MaLR 0 1580 1403 208 345 0 18 chrX 124194146 124194201 -52779939 - L2 LINE L2 -26 3246 3193 201 222 0 0 chrX 124194368 124194431 -52779709 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chrX 124194559 124194580 -52779560 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chrX 124195226 124195257 -52778883 + AT_rich Low_complexity Low_complexity 1 31 0 283 220 0 0 chrX 124195543 124195602 -52778538 - L1ME LINE L1 -569 6095 6037 416 281 14 7 chrX 124195663 124195802 -52778338 - L1ME LINE L1 -2606 4038 3899 * 3198 273 74 30 chrX 124195784 124197747 -52776393 - L1ME LINE L1 -610 5552 3507 1756 234 87 35 chrX 124197956 124198267 -52775873 - L1ME LINE L1 -2940 3704 3411 1948 150 61 17 chrX 124198267 124198626 -52775514 + THE1C LTR MaLR 1 375 0 1756 234 87 35 chrX 124198626 124199118 -52775022 - L1ME LINE L1 -3233 3411 2859 4926 176 13 10 chrX 124199140 124200502 -52773638 - L1MA8 LINE L1 -112 6179 4819 334 264 87 14 chrX 124200694 124200912 -52773228 - L1MEc LINE L1 -5000 1649 1320 1687 203 42 0 chrX 124200979 124201036 -52773104 - L1MA5 LINE L1 -4 6296 6243 360 0 0 0 chrX 124201036 124201076 -52773064 + (TA)n Simple_repeat Simple_repeat 2 41 0 1687 203 42 0 chrX 124201076 124201403 -52772737 - L1MA5 LINE L1 -57 6243 5896 3537 161 19 6 chrX 124201435 124202083 -52772057 - L1MA3 LINE L1 -8 6297 5642 11919 207 30 107 chrX 124202083 124202451 -52771689 - L1M4 LINE L1 -1369 6196 5801 180 0 0 0 chrX 124202451 124202471 -52771669 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 11919 207 30 107 chrX 124202471 124203066 -52771074 - L1M4 LINE L1 -1764 5801 5162 1857 45 66 0 chrX 124203066 124203308 -52770832 + L1PA8 LINE L1 5910 6167 -5 11919 207 30 107 chrX 124203308 124206656 -52767484 - L1M4 LINE L1 -2403 5162 1870 1849 216 73 60 chrX 124206656 124207203 -52766937 - MLT2B3 LTR ERVL 0 554 1 11919 207 30 107 chrX 124207203 124208265 -52765875 - L1M4 LINE L1 -5695 1870 728 7424 112 4 4 chrX 124208267 124209306 -52764834 - HERVL-A2 LTR ERVL -758 4896 3858 6941 128 6 11 chrX 124209302 124210363 -52763777 - HERVL-A2 LTR ERVL -4599 1055 1 * 383 174 4 0 chrX 124210365 124210439 -52763701 - MLT2A2 LTR ERVL -2 451 386 2257 163 18 34 chrX 124211059 124211500 -52762640 + Tigger2a DNA MER2_type 1 434 0 459 230 43 36 chrX 124211977 124212116 -52762024 - L2 LINE L2 -1 3312 3173 1565 66 5 14 chrX 124212116 124212328 -52761812 + L1MA2 LINE L1 5718 5927 -377 5114 196 34 23 chrX 124212448 124214403 -52759737 - HERVL LTR ERVL -2561 3124 1075 31 68 0 0 chrX 124214408 124214467 -52759673 + AT_rich Low_complexity Low_complexity 1 59 0 291 235 0 15 chrX 124214649 124214717 -52759423 - MER107 DNA MER1_type -56 141 75 6145 225 23 35 chrX 124215203 124215216 -52758924 - L1M4 LINE L1 -1125 5203 5191 6597 38 1 0 chrX 124215216 124216014 -52758126 + L1PA4 LINE L1 5357 6155 0 6145 225 23 35 chrX 124216014 124217166 -52756974 - L1M4 LINE L1 -1137 5191 4026 1802 126 56 28 chrX 124217166 124217451 -52756689 - AluSg SINE Alu -12 298 6 6145 225 23 35 chrX 124217451 124217862 -52756278 - L1M4 LINE L1 -2302 4026 3612 2010 96 4 0 chrX 124217862 124218134 -52756006 + AluSp SINE Alu 28 300 -13 6145 225 23 35 chrX 124218134 124218705 -52755435 - L1M4 LINE L1 -2716 3612 3123 5361 206 29 42 chrX 124218703 124220208 -52753932 - L1M4 LINE L1 -4065 1263 3 * 302 321 36 0 chrX 124220228 124220368 -52753772 + L1ME3A LINE L1 5933 6077 -93 367 221 14 107 chrX 124220381 124220521 -52753619 + L2 LINE L2 2350 2476 -838 460 291 0 0 chrX 124220641 124220751 -52753389 + MER81 DNA DNA 4 113 -1 741 327 28 46 chrX 124220759 124221127 -52753013 + L2 LINE L2 2721 3081 -232 889 253 108 48 chrX 124221170 124221522 -52752618 + MLT2D LTR ERVL 1 373 -41 1763 281 60 10 chrX 124221617 124222229 -52751911 + ERVL-D LTR ERVL 22 664 -5100 * 2027 238 9 16 chrX 124222220 124222661 -52751479 + ERVL-D LTR ERVL 1383 1820 -3944 312 214 0 0 chrX 124222662 124222727 -52751413 - HERVL LTR ERVL -3810 1844 1787 1956 226 10 0 chrX 124222729 124223122 -52751018 + ERVL-D LTR ERVL 1851 2247 -3517 1269 228 39 7 chrX 124223130 124223415 -52750725 + ERVL-D LTR ERVL 2409 2702 -3062 674 206 61 12 chrX 124223415 124223580 -52750560 + MLT1B LTR MaLR 1 173 -217 514 260 0 0 chrX 124223584 124223688 -52750452 + L1PA13 LINE L1 2 105 -6682 622 215 15 15 chrX 124223691 124223826 -52750314 + L1PA13 LINE L1 428 562 -6225 * 4915 225 42 11 chrX 124223817 124225632 -52748508 + L1PA13 LINE L1 1187 3065 -3732 1290 189 93 11 chrX 124225634 124225904 -52748236 + MSTA LTR MaLR 1 292 -136 5338 189 83 57 chrX 124225905 124227370 -52746770 + MER41-int LTR ERV1 330 1832 -5373 2696 141 5 5 chrX 124227368 124227793 -52746347 + MER41-int LTR ERV1 3638 4062 -818 * 1192 160 38 5 chrX 124227795 124228007 -52746133 + MER41-int LTR ERV1 921 1139 -4807 335 78 39 0 chrX 124228007 124228058 -52746082 + L1PA10 LINE L1 6093 6145 -23 * 2912 190 9 4 chrX 124228037 124228569 -52745571 + MSTA-int LTR MaLR 1117 1651 0 1803 192 117 8 chrX 124228569 124228955 -52745185 + MSTA LTR MaLR 1 428 0 8376 242 9 7 chrX 124228959 124231018 -52743122 + L1PA13 LINE L1 3067 5129 -1668 222 37 0 0 chrX 124231023 124231050 -52743090 + (CA)n Simple_repeat Simple_repeat 2 28 0 295 164 0 0 chrX 124231060 124231115 -52743025 + MLT2B1 LTR ERVL 464 518 -2 218 357 16 33 chrX 124231123 124231305 -52742835 + L2 LINE L2 3135 3313 0 2777 96 60 10 chrX 124231419 124231799 -52742341 + MLT2A1 LTR ERVL 1 405 -39 439 89 13 13 chrX 124231799 124231878 -52742262 + (TA)n Simple_repeat Simple_repeat 1 79 0 2777 96 60 10 chrX 124231878 124231912 -52742228 + MLT2A1 LTR ERVL 405 436 -8 367 234 0 83 chrX 124232115 124232260 -52741880 + HAL1b LINE L1 337 469 -879 237 300 38 0 chrX 124233169 124233249 -52740891 + MIR3 SINE MIR 120 202 -6 231 305 0 0 chrX 124233475 124233534 -52740606 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 301 237 21 43 chrX 124234071 124234164 -52739976 + L1MC4 LINE L1 6613 6703 -1339 852 171 64 38 chrX 124234955 124235153 -52738987 + L1PB4 LINE L1 5948 6152 -4 895 184 7 7 chrX 124235159 124235353 -52738787 + L1MA9 LINE L1 2217 2405 -3741 5950 99 27 0 chrX 124235353 124236310 -52737830 + L1PA14 LINE L1 5174 6154 -7 1564 76 0 5 chrX 124236323 124236521 -52737619 + AluSc SINE Alu 1 197 -112 8266 203 50 11 chrX 124236522 124239374 -52734766 + L1MA9 LINE L1 3167 6122 -190 22 70 0 0 chrX 124240852 124240895 -52733245 + AT_rich Low_complexity Low_complexity 1 43 0 195 100 0 0 chrX 124240944 124240974 -52733166 + (CA)n Simple_repeat Simple_repeat 2 31 0 304 318 127 13 chrX 124241262 124241342 -52732798 - L1ME3A LINE L1 -1 6169 6100 222 118 0 0 chrX 124241342 124241376 -52732764 + (TA)n Simple_repeat Simple_repeat 2 35 0 304 318 127 13 chrX 124241376 124241531 -52732609 - L1ME3A LINE L1 -70 6100 5907 792 249 74 40 chrX 124241593 124241801 -52732339 - L1ME3A LINE L1 -529 5641 5442 1601 164 75 0 chrX 124241801 124242082 -52732058 - AluSx SINE Alu -8 304 3 792 249 74 40 chrX 124242082 124242284 -52731856 - L1ME3A LINE L1 -728 5442 5222 589 278 77 43 chrX 124242656 124242890 -52731250 - LTR16B LTR ERVL -169 295 54 318 194 6 3 chrX 124242895 124242968 -52731172 - L1M4 LINE L1 -407 5748 5675 304 143 16 0 chrX 124243218 124243281 -52730859 - L1MA3 LINE L1 0 6305 6242 1413 130 26 19 chrX 124243281 124243550 -52730590 - L1M4 LINE L1 -1312 4834 4564 1608 183 133 26 chrX 124243565 124243751 -52730389 + LTR2B LTR ERV1 32 197 -293 186 43 0 0 chrX 124243751 124243774 -52730366 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1608 183 133 26 chrX 124243774 124244002 -52730138 + LTR2B LTR ERV1 197 490 0 1518 174 47 3 chrX 124244002 124244324 -52729816 - L1M4 LINE L1 -1575 4571 4236 292 186 88 88 chrX 124244325 124244427 -52729713 + MSTB2 LTR MaLR 48 149 -308 677 239 80 11 chrX 124244461 124244649 -52729491 + L1M2 LINE L1 1014 1214 -5635 239 283 84 33 chrX 124244663 124244995 -52729145 + L1M2 LINE L1 3646 3994 -2854 * 1134 195 5 0 chrX 124244989 124245199 -52728941 - L1P LINE L1 -2488 3658 3448 189 343 86 54 chrX 124445803 124446118 -52528022 - L2 LINE L2 -351 2963 2639 23 33 0 0 chrX 124446347 124446377 -52527763 + AT_rich Low_complexity Low_complexity 1 30 0 19069 160 30 24 chrX 124446377 124454037 -52520103 - L1MA2 LINE L1 0 7723 19 426 295 65 0 chrX 124454039 124454178 -52519962 - MIR SINE MIR -62 200 53 211 299 0 0 chrX 124454250 124454317 -52519823 + A-rich Low_complexity Low_complexity 1 67 0 3300 294 41 52 chrX 124454388 124456596 -52517544 + L1PA15 LINE L1 1 2722 -4859 40873 31 23 2 chrX 124456598 124462614 -52511526 + L1PA3 LINE L1 2 6151 -4 26 0 0 0 chrX 124462614 124462640 -52511500 + AT_rich Low_complexity Low_complexity 1 26 0 1550 99 43 9 chrX 124462640 124462872 -52511268 + L1PA11 LINE L1 5925 6164 -10 3195 217 13 13 chrX 124463118 124463905 -52510235 + L1PA15 LINE L1 2684 3470 -4114 * 4135 212 53 10 chrX 124463900 124463970 -52510170 + L1PA8 LINE L1 2411 2477 -5107 183 42 0 0 chrX 124463970 124463994 -52510146 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4135 212 53 10 chrX 124463994 124464958 -52509182 + L1PA8 LINE L1 2477 3490 -4094 3287 86 2 0 chrX 124464964 124465450 -52508690 - L1PA7 LINE L1 -851 5295 4809 6811 48 4 0 chrX 124465450 124466291 -52507849 + L1PA7 LINE L1 5309 6152 -2 19757 113 16 8 chrX 124466298 124467429 -52506711 + L1PA8 LINE L1 3483 4603 -3007 1994 87 14 4 chrX 124467429 124467704 -52506436 + AluY SINE Alu 27 304 -7 19757 113 16 8 chrX 124467704 124470674 -52503466 + L1PA8 LINE L1 4603 7609 -1 5341 199 17 11 chrX 124470689 124472693 -52501447 + L1PA15 LINE L1 5599 7603 0 251 207 17 0 chrX 124472823 124472881 -52501259 + MER116 DNA Mariner 1 59 -21 503 311 72 6 chrX 124473772 124473952 -52500188 - MIR3 SINE MIR -14 194 3 848 272 12 24 chrX 124473959 124474209 -52499931 - MIR SINE MIR -11 251 5 382 340 86 76 chrX 124474730 124475418 -52498722 - L2 LINE L2 -10 3262 2577 21 0 0 0 chrX 124475573 124475594 -52498546 + AT_rich Low_complexity Low_complexity 1 21 0 283 258 46 46 chrX 124476619 124476772 -52497368 + MLT1J2 LTR MaLR 3 160 -286 391 277 38 58 chrX 124476823 124477037 -52497103 + MLT1J2 LTR MaLR 233 406 -3 658 265 64 20 chrX 124477437 124477641 -52496499 + MIR SINE MIR 49 261 -1 293 277 53 11 chrX 124477639 124477733 -52496407 - MIR3 SINE MIR -2 206 109 * 2449 49 13 3 chrX 124478076 124478383 -52495757 + AluY SINE Alu 1 310 -1 2123 54 3 118 chrX 124478392 124478724 -52495416 + AluY SINE Alu 1 294 -17 252 0 0 0 chrX 124479478 124479506 -52494634 + (T)n Simple_repeat Simple_repeat 1 28 0 380 311 32 78 chrX 124479837 124480056 -52494084 - MIR SINE MIR -34 228 20 437 305 8 15 chrX 124480168 124480299 -52493841 + MIR3 SINE MIR 48 177 -31 2343 134 38 0 chrX 124481398 124481742 -52492398 + LTR18A LTR ERVL 1 357 0 333 277 95 34 chrX 124482603 124482751 -52491389 + MIR SINE MIR 81 237 -25 2881 115 8 34 chrX 124484602 124485070 -52489070 - L1PA15 LINE L1 -1 6164 5709 400 171 12 219 chrX 124485204 124485450 -52488690 - MER112 DNA MER1_type -65 195 1 287 288 38 0 chrX 124485734 124485814 -52488326 + MIR SINE MIR 110 192 -70 192 40 0 0 chrX 124485820 124485845 -52488295 + (ATG)n Simple_repeat Simple_repeat 2 26 0 184 296 183 0 chrX 124485849 124485920 -52488220 - L2 LINE L2 -16 3256 3173 434 357 45 66 chrX 124486217 124486805 -52487335 + L2 LINE L2 2696 3268 -4 624 214 79 0 chrX 124486894 124487020 -52487120 + L2 LINE L2 3137 3272 0 943 212 32 28 chrX 124487029 124487246 -52486894 - MER20 DNA MER1_type 0 219 2 292 400 35 6 chrX 124487947 124488117 -52486023 - MIR3 SINE MIR -9 199 25 286 236 0 0 chrX 124488238 124488293 -52485847 + L2 LINE L2 3214 3268 -4 270 0 0 0 chrX 124488830 124488860 -52485280 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 411 21 0 0 chrX 124488859 124488907 -52485233 + (CA)n Simple_repeat Simple_repeat 1 48 0 2343 94 0 10 chrX 124489260 124489569 -52484571 - AluSx SINE Alu -1 311 6 534 225 70 8 chrX 124490725 124490854 -52483286 + MIR SINE MIR 78 214 -48 970 215 82 82 chrX 124490859 124491236 -52482904 + MSTD LTR MaLR 1 377 -19 212 189 0 0 chrX 124492441 124492478 -52481662 + (TA)n Simple_repeat Simple_repeat 2 38 0 3081 173 15 2 chrX 124492636 124493178 -52480962 + MER44D DNA MER2_type 2 605 0 234 368 57 9 chrX 124493407 124493513 -52480627 - L2 LINE L2 -4 3268 3158 566 318 63 0 chrX 124493623 124493812 -52480328 - MIR SINE MIR -60 202 2 22 35 0 0 chrX 124494739 124494768 -52479372 + AT_rich Low_complexity Low_complexity 1 29 0 434 301 82 14 chrX 124497395 124497614 -52476526 - MIR SINE MIR -3 259 26 2466 59 26 0 chrX 124497693 124497996 -52476144 + AluY SINE Alu 1 311 0 593 272 30 6 chrX 124499059 124499234 -52474906 - MIR SINE MIR -64 144 9 311 253 13 0 chrX 124499505 124499580 -52474560 - L2 LINE L2 -2 3270 3195 441 288 8 17 chrX 124499584 124499702 -52474438 + MIR3 SINE MIR 10 126 -82 207 0 0 0 chrX 124499959 124499982 -52474158 + (CA)n Simple_repeat Simple_repeat 1 23 0 1880 140 26 26 chrX 124500195 124500503 -52473637 + AluJo SINE Alu 1 308 -4 582 322 17 38 chrX 124500584 124500720 -52473420 + MIR SINE MIR 20 150 -112 14760 129 29 6 chrX 124500720 124503083 -52471057 + Tigger1 DNA MER2_type 1 2417 -1 582 322 17 38 chrX 124503083 124503185 -52470955 + MIR SINE MIR 150 253 -9 1362 111 81 26 chrX 124503248 124503519 -52470621 - L1MA4 LINE L1 0 6300 6015 435 19 0 0 chrX 124504298 124504350 -52469790 + (TC)n Simple_repeat Simple_repeat 1 52 0 6681 54 12 0 chrX 124504785 124505675 -52468465 - L1PA7 LINE L1 0 6154 5254 3637 109 76 38 chrX 124505680 124506773 -52467367 + MER11A LTR ERVK 1 1236 0 6412 89 7 1 chrX 124506773 124507724 -52466416 - L1P LINE L1 -893 5253 4297 335 247 149 58 chrX 124510294 124510448 -52463692 + L2 LINE L2 3146 3313 0 2824 10 0 0 chrX 124510685 124510990 -52463150 + AluYa5 SINE Alu 1 305 -6 250 369 0 16 chrX 124511337 124511459 -52462681 + L2 LINE L2 2916 3035 -237 2409 72 0 28 chrX 124511462 124511781 -52462359 - AluY SINE Alu -1 310 1 886 101 0 0 chrX 124512880 124513018 -52461122 - L1MB7 LINE L1 0 6184 6047 640 274 41 5 chrX 124515137 124515334 -52458806 - L2 LINE L2 -13 3300 3097 2680 150 9 67 chrX 124515561 124516100 -52458040 + MLT2B3 LTR ERVL 1 508 -46 318 183 0 0 chrX 124516104 124516175 -52457965 + (TG)n Simple_repeat Simple_repeat 2 72 0 7373 80 1 2 chrX 124516253 124518036 -52456104 - L1PA7 LINE L1 -2 6152 4364 195 42 0 0 chrX 124518916 124518940 -52455200 + (TA)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chrX 124518952 124518973 -52455167 + (ATTG)n Simple_repeat Simple_repeat 1 21 0 414 214 262 0 chrX 124519073 124519199 -52454941 + MSTA LTR MaLR 3 161 -235 1833 188 55 35 chrX 124519473 124519931 -52454209 - MLT1C LTR MaLR 0 467 1 197 237 0 0 chrX 124520358 124520396 -52453744 + L2 LINE L2 3266 3303 -10 7413 32 11 0 chrX 124520938 124521830 -52452310 + L1PA4 LINE L1 5254 6155 0 198 0 0 0 chrX 124522280 124522302 -52451838 + (TG)n Simple_repeat Simple_repeat 2 23 0 1916 241 52 11 chrX 124523270 124523794 -52450346 - MER90 LTR ERV1 -2 612 68 21 0 0 0 chrX 124524107 124524128 -52450012 + AT_rich Low_complexity Low_complexity 1 21 0 848 303 47 74 chrX 124524469 124524878 -52449262 + L1MEd LINE L1 1 385 -5734 186 43 0 0 chrX 124524878 124524901 -52449239 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 848 303 47 74 chrX 124524901 124525193 -52448947 + L1MEd LINE L1 385 683 -5436 677 279 78 29 chrX 124525340 124525978 -52448162 + L1MEd LINE L1 942 1664 -4646 1446 283 18 45 chrX 124526012 124526637 -52447503 + L1M3b LINE L1 5 612 -5669 5472 147 31 13 chrX 124527006 124527247 -52446893 + L1MA6 LINE L1 4936 5171 -1129 9114 37 2 1 chrX 124527247 124528317 -52445823 + MER11C LTR ERVK 1 1071 0 5472 147 31 13 chrX 124528317 124529417 -52444723 + L1MA6 LINE L1 5171 6300 0 2298 101 0 0 chrX 124529436 124529732 -52444408 + AluSg SINE Alu 8 303 -7 460 286 60 75 chrX 124529869 124530265 -52443875 + L1MEd LINE L1 1788 2147 -3982 1231 166 91 25 chrX 124530285 124530526 -52443614 + MSTA LTR MaLR 169 425 -3 4779 176 102 2 chrX 124530527 124531488 -52442652 + MSTA-int LTR MaLR 595 1651 0 2089 133 147 5 chrX 124531488 124531863 -52442277 + MSTA LTR MaLR 1 428 0 325 346 8 54 chrX 124531949 124532079 -52442061 + L2 LINE L2 3116 3239 -33 291 363 42 28 chrX 124532210 124532425 -52441715 - L2 LINE L2 -189 3083 2866 477 252 79 8 chrX 124533003 124533130 -52441010 + MIR3 SINE MIR 9 144 -64 412 322 126 54 chrX 124533392 124534057 -52440083 + L2 LINE L2 2135 2847 -467 185 305 63 53 chrX 124534094 124534189 -52439951 + L2 LINE L2 2916 3011 -261 222 118 0 0 chrX 124534835 124534869 -52439271 + (TC)n Simple_repeat Simple_repeat 1 34 0 363 96 0 0 chrX 124535213 124535265 -52438875 + (TG)n Simple_repeat Simple_repeat 2 53 0 1374 131 62 39 chrX 124535270 124535530 -52438610 + THE1B LTR MaLR 1 266 -98 4089 100 13 1 chrX 124535531 124536434 -52437706 + THE1B-int LTR MaLR 566 1580 0 2037 148 58 3 chrX 124536434 124536779 -52437361 + THE1B LTR MaLR 1 364 0 361 296 96 27 chrX 124536867 124537272 -52436868 + L1M4 LINE L1 4112 4544 -1602 418 316 14 5 chrX 124537412 124537621 -52436519 + L1M4 LINE L1 4730 4940 -1206 419 250 46 9 chrX 124538225 124538333 -52435807 + L2 LINE L2 3196 3307 -6 276 188 0 0 chrX 124539593 124539657 -52434483 + (TTCA)n Simple_repeat Simple_repeat 1 64 0 543 330 95 38 chrX 124539689 124540264 -52433876 - L2 LINE L2 -93 3179 2577 264 290 0 0 chrX 124541084 124541146 -52432994 - MIR3 SINE MIR -3 205 144 483 276 94 13 chrX 124541157 124541365 -52432775 + MIR SINE MIR 38 256 -6 255 289 165 0 chrX 124541422 124541519 -52432621 - MIR SINE MIR -78 130 18 1931 70 0 0 chrX 124542549 124542805 -52431335 - L1P LINE L1 -1956 4190 3935 2550 59 6 0 chrX 124542806 124543127 -52431013 + L1PA7 LINE L1 5829 6151 -3 209 272 62 37 chrX 124544164 124544245 -52429895 - MER5A DNA MER1_type -79 110 28 18850 28 0 0 chrX 124544784 124547827 -52426313 + L1PA3 LINE L1 3086 6150 -5 363 245 235 0 chrX 124548698 124548796 -52425344 - MER5A DNA MER1_type -7 182 62 335 380 54 35 chrX 124548920 124549325 -52424815 - L2 LINE L2 -354 2960 2548 23 0 0 0 chrX 124550703 124550726 -52423414 + AT_rich Low_complexity Low_complexity 1 23 0 327 305 13 53 chrX 124550734 124550885 -52423255 + MIR SINE MIR 21 165 -97 745 254 96 0 chrX 124552899 124553096 -52421044 - MIR SINE MIR 0 262 47 246 179 0 0 chrX 124553129 124553185 -52420955 + L1MC4 LINE L1 6648 6703 -1339 345 263 0 0 chrX 124553191 124553290 -52420850 + (TA)n Simple_repeat Simple_repeat 2 100 0 243 152 0 0 chrX 124553293 124553339 -52420801 - L1MC4 LINE L1 -1339 6703 6658 242 210 32 0 chrX 124553371 124553433 -52420707 - L1MC4 LINE L1 -1339 6703 6640 201 195 0 0 chrX 124553433 124553474 -52420666 + (CA)n Simple_repeat Simple_repeat 2 42 0 312 296 23 0 chrX 124553481 124553569 -52420571 - L1MC4 LINE L1 -1339 6703 6614 * 325 276 23 0 chrX 124553515 124553602 -52420538 + L1MC4 LINE L1 6614 6702 -1340 * 358 253 23 0 chrX 124553573 124553660 -52420480 - L1MC4 LINE L1 -1339 6703 6615 312 303 11 0 chrX 124553585 124553674 -52420466 + L1MC4 LINE L1 6614 6703 -1339 * 186 43 0 0 chrX 124553685 124553708 -52420432 + (TA)n Simple_repeat Simple_repeat 2 24 0 2195 125 0 0 chrX 124553708 124553996 -52420144 - AluSx SINE Alu -24 288 1 1582 173 30 37 chrX 124554491 124554896 -52419244 - L1MB8 LINE L1 0 6178 5777 1917 228 75 16 chrX 124554898 124555539 -52418601 - L1MB8 LINE L1 -953 5193 4515 1813 157 13 30 chrX 124555581 124555881 -52418259 + AluJo SINE Alu 1 295 -17 2238 173 33 42 chrX 124555942 124556485 -52417655 - L1MA8 LINE L1 -6 6285 5748 28 29 0 0 chrX 124556564 124556599 -52417541 + AT_rich Low_complexity Low_complexity 1 35 0 265 351 0 0 chrX 124556879 124556991 -52417149 - MIR SINE MIR -72 136 42 441 167 21 31 chrX 124556999 124557095 -52417045 - MLT1J1 LTR MaLR -336 110 16 459 289 59 32 chrX 124557252 124557439 -52416701 - MIR SINE MIR -37 225 34 255 315 67 82 chrX 124557497 124557764 -52416376 - L2 LINE L2 -206 3066 2804 252 0 0 0 chrX 124558997 124559025 -52415115 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 450 36 0 0 chrX 124559024 124559080 -52415060 + (GA)n Simple_repeat Simple_repeat 1 56 0 2302 102 51 23 chrX 124559397 124559751 -52414389 - THE1B LTR MaLR 0 364 1 225 266 149 0 chrX 124560204 124560298 -52413842 + L2 LINE L2 2650 2757 -557 363 337 108 39 chrX 124561488 124561881 -52412259 - L2 LINE L2 -183 3089 2664 * 446 333 148 36 chrX 124561860 124562251 -52411889 - L2 LINE L2 -6 3266 2832 2325 75 4 0 chrX 124562296 124562577 -52411563 - AluSp SINE Alu -27 286 5 497 356 60 13 chrX 124562602 124562900 -52411240 - L2 LINE L2 -615 2699 2388 21 0 0 0 chrX 124563008 124563029 -52411111 + AT_rich Low_complexity Low_complexity 1 21 0 515 217 106 29 chrX 124563175 124563394 -52410746 - L1MC4a LINE L1 -167 5954 5715 373 357 26 55 chrX 124563394 124563677 -52410463 - L2 LINE L2 -2 3311 2954 6072 50 0 5 chrX 124563694 124564449 -52409691 + L1PA7 LINE L1 5402 6152 -2 1532 144 70 91 chrX 124564572 124564955 -52409185 + THE1C LTR MaLR 1 375 0 24 0 0 0 chrX 124565540 124565564 -52408576 + AT_rich Low_complexity Low_complexity 1 24 0 836 239 75 25 chrX 124565676 124566048 -52408092 - L1MC4a LINE L1 -590 5584 5201 393 363 125 10 chrX 124566106 124566505 -52407635 - L1MC4a LINE L1 -1039 5107 4663 * 422 290 134 29 chrX 124566495 124566771 -52407369 - L1MC4a LINE L1 -3549 2597 2293 499 287 0 57 chrX 124567362 124567519 -52406621 - MER5B DNA MER1_type -30 148 1 26 64 0 0 chrX 124568189 124568236 -52405904 + AT_rich Low_complexity Low_complexity 1 47 0 2264 121 0 0 chrX 124568489 124568795 -52405345 + AluSx SINE Alu 1 306 -6 704 324 56 11 chrX 124569147 124569431 -52404709 - L2 LINE L2 -2 3311 3015 360 280 15 0 chrX 124569523 124569655 -52404485 - MER103 DNA DNA -19 147 14 671 263 6 17 chrX 124570565 124570740 -52403400 - MER5A DNA MER1_type -1 188 16 3002 50 5 0 chrX 124571728 124572108 -52402032 - L1PA5 LINE L1 -3 6151 5770 4437 16 0 0 chrX 124572116 124572625 -52401515 - L1PA2 LINE L1 -2 6153 5645 290 28 0 0 chrX 124572625 124572661 -52401479 + L1PA2 LINE L1 5594 5629 -526 * 7430 23 3 0 chrX 124572656 124573965 -52400175 - L1PA5 LINE L1 -372 5783 4470 30 0 0 0 chrX 124574730 124574760 -52399380 + AT_rich Low_complexity Low_complexity 1 30 0 1153 307 40 2 chrX 124575576 124575980 -52398160 + LTR16A LTR ERVL 27 445 -5 1071 181 105 0 chrX 124575984 124576232 -52397908 + ORSL DNA AcHobo 1 274 -1 904 266 48 4 chrX 124577120 124577349 -52396791 + MIR SINE MIR 19 257 -5 784 326 128 37 chrX 124578475 124579285 -52394855 + L2 LINE L2 1961 2844 -470 2209 83 3 46 chrX 124579446 124579770 -52394370 - AluSq SINE Alu -3 310 1 453 350 7 7 chrX 124579897 124580040 -52394100 + L2 LINE L2 3115 3257 -15 967 272 11 26 chrX 124580177 124580442 -52393698 + MIR SINE MIR 2 262 0 21 36 0 0 chrX 124580443 124580471 -52393669 + AT_rich Low_complexity Low_complexity 1 28 0 235 290 0 0 chrX 124580536 124580598 -52393542 + MIR SINE MIR 198 259 -3 328 258 89 57 chrX 124581548 124581672 -52392468 - L2 LINE L2 -8 3305 3178 1101 80 11 6 chrX 124582125 124582301 -52391839 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 213 159 0 23 chrX 124582303 124582347 -52391793 + CT-rich Low_complexity Low_complexity 3 45 0 1586 222 44 21 chrX 124582521 124582908 -52391232 + MSTD LTR MaLR 1 396 0 216 255 0 0 chrX 124584303 124584354 -52389786 + MIR SINE MIR 109 159 -103 247 291 23 23 chrX 124584402 124584488 -52389652 - MIR SINE MIR -60 148 63 997 252 50 16 chrX 124584758 124584810 -52389330 + MER46C DNA MER2_type 2 51 -287 303 28 0 0 chrX 124584810 124584846 -52389294 + (TC)n Simple_repeat Simple_repeat 2 37 0 997 252 50 16 chrX 124584846 124585114 -52389026 + MER46C DNA MER2_type 51 333 -5 279 281 0 0 chrX 124585115 124585179 -52388961 - L2 LINE L2 -10 3303 3240 195 277 0 21 chrX 124585318 124585365 -52388775 - L2 LINE L2 -89 3183 3138 283 289 133 0 chrX 124586592 124586682 -52387458 - MIR SINE MIR -1 261 160 2355 106 0 0 chrX 124586778 124587079 -52387061 - AluSx SINE Alu -11 301 1 220 304 0 14 chrX 124587710 124587779 -52386361 + CT-rich Low_complexity Low_complexity 1 68 0 412 286 35 35 chrX 124588368 124588539 -52385601 - MIR3 SINE MIR -5 203 33 364 255 98 0 chrX 124589226 124589328 -52384812 - MIR SINE MIR -63 145 34 459 236 57 8 chrX 124589460 124589583 -52384557 + MIR SINE MIR 39 167 -95 1046 205 100 0 chrX 124589740 124589989 -52384151 + ORSL DNA AcHobo 2 275 0 364 346 72 51 chrX 124590001 124590333 -52383807 + L1MEd LINE L1 44 382 -5737 189 0 0 0 chrX 124590440 124590461 -52383679 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 310 283 61 15 chrX 124590504 124590702 -52383438 + L1MEd LINE L1 489 695 -5332 415 70 0 0 chrX 124591491 124591548 -52382592 - L1PA5 LINE L1 -1 6153 6097 209 309 0 29 chrX 124592383 124592451 -52381689 + L2 LINE L2 3206 3271 -1 273 313 10 30 chrX 124592809 124592908 -52381232 - L2 LINE L2 -181 3091 2995 764 242 121 19 chrX 124592927 124593191 -52380949 + L2 LINE L2 3021 3311 -2 287 343 72 12 chrX 124593189 124593355 -52380785 - L2 LINE L2 -342 2972 2797 * 1450 41 0 0 chrX 124593638 124593809 -52380331 - L1P2 LINE L1 -429 5725 5555 477 48 0 0 chrX 124593809 124593871 -52380269 + L1PA6 LINE L1 6089 6150 -4 515 260 57 70 chrX 124593882 124594109 -52380031 - MIR SINE MIR -36 226 3 864 241 25 25 chrX 124594574 124594815 -52379325 - MIR SINE MIR -7 255 15 1557 133 129 0 chrX 124594857 124595112 -52379028 + Ricksha DNA DNA 1 288 -2958 8737 117 21 31 chrX 124595113 124596538 -52377602 + Ricksha DNA DNA 1823 3233 -13 256 336 25 0 chrX 124597803 124597925 -52376215 - L2 LINE L2 -1314 2000 1876 264 366 74 42 chrX 124598413 124598967 -52375173 - L2 LINE L2 -2542 772 201 198 71 0 0 chrX 124601076 124601104 -52373036 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 6256 26 25 12 chrX 124601107 124601875 -52372265 - L1PA4 LINE L1 0 6155 5378 325 320 120 11 chrX 124601879 124602054 -52372086 - L2 LINE L2 0 3313 3120 848 316 145 17 chrX 124602064 124602422 -52371718 - L2 LINE L2 0 3272 2869 810 257 9 36 chrX 124602512 124602734 -52371406 + MIR SINE MIR 32 247 -15 2068 215 61 42 chrX 124603719 124604263 -52369877 + MLT2B3 LTR ERVL 1 554 0 1762 150 30 82 chrX 124607104 124607471 -52366669 - MER7A DNA MER2_type 0 346 1 202 311 56 56 chrX 124607696 124607786 -52366354 - L2 LINE L2 -44 3228 3139 666 321 100 42 chrX 124607901 124608359 -52365781 - L2 LINE L2 -340 2974 2490 1853 243 99 92 chrX 124608366 124609328 -52364812 - L2 LINE L2 0 3313 2346 295 290 11 0 chrX 124609328 124609421 -52364719 - L2 LINE L2 -826 2488 2395 214 270 0 32 chrX 124609428 124609491 -52364649 - MIR3 SINE MIR -37 171 111 246 116 0 0 chrX 124609663 124609706 -52364434 + (TAATG)n Simple_repeat Simple_repeat 5 47 0 236 222 16 16 chrX 124609824 124609887 -52364253 + MLT1K LTR MaLR 180 242 -346 201 132 38 19 chrX 124610784 124610837 -52363303 + GA-rich Low_complexity Low_complexity 1 54 0 636 213 8 0 chrX 124611268 124611390 -52362750 - MER94 DNA DNA -1 133 11 1269 256 55 55 chrX 124611822 124612333 -52361807 - MLT1J LTR MaLR 0 511 1 26 0 0 0 chrX 124613236 124613262 -52360878 + AT_rich Low_complexity Low_complexity 1 26 0 1685 238 43 52 chrX 124614299 124614832 -52359308 - L1M3e LINE L1 -6498 532 5 1527 263 33 60 chrX 124614830 124615712 -52358428 + L1ME3A LINE L1 5143 5996 -168 * 416 270 134 100 chrX 124615931 124616350 -52357790 + L2 LINE L2 2815 3247 -66 363 265 81 128 chrX 124616356 124616654 -52357486 + L2 LINE L2 2987 3270 -2 821 250 60 10 chrX 124618118 124618318 -52355822 - MER63A DNA MER1_type 0 210 1 371 282 138 12 chrX 124619793 124620014 -52354126 - MLT1H LTR MaLR -4 545 227 715 278 29 95 chrX 124620246 124620447 -52353693 + L3 LINE CR1 970 1136 -441 1573 206 19 22 chrX 124620447 124620811 -52353329 + MLT1A1 LTR MaLR 1 363 -2 715 278 29 95 chrX 124620811 124620987 -52353153 + L3 LINE CR1 1136 1322 -255 * 1513 271 21 45 chrX 124620986 124621313 -52352827 + L2 LINE L2 2752 3050 -263 2129 114 0 0 chrX 124621313 124621614 -52352526 + AluSx SINE Alu 3 303 0 1513 271 21 45 chrX 124621614 124621872 -52352268 + L2 LINE L2 3050 3313 0 444 310 38 25 chrX 124621898 124622056 -52352084 + L3 LINE CR1 1412 1571 -6 287 115 0 0 chrX 124622638 124622690 -52351450 - L1MA4A LINE L1 -1 6302 6251 415 325 53 0 chrX 124622823 124622937 -52351203 - MIR SINE MIR -59 149 30 411 289 67 13 chrX 124623637 124623786 -52350354 + MIR SINE MIR 34 190 -72 398 345 0 9 chrX 124624091 124624204 -52349936 - MIR SINE MIR -78 130 19 1315 136 25 0 chrX 124624236 124624479 -52349661 + L1MA4 LINE L1 6046 6294 -6 437 354 49 6 chrX 124624523 124624687 -52349453 - MIR3 SINE MIR -4 204 34 393 313 97 11 chrX 124625969 124626145 -52347995 + MIR3 SINE MIR 9 199 -9 632 175 181 6 chrX 124626193 124626353 -52347787 + MER58C DNA MER1_type 28 215 0 504 253 42 20 chrX 124626371 124626524 -52347616 + MIR SINE MIR 50 204 -58 454 144 60 6 chrX 124626538 124626705 -52347435 + (TA)n Simple_repeat Simple_repeat 1 176 0 277 361 38 15 chrX 124626876 124627009 -52347131 - MIR3 SINE MIR -8 200 65 1268 206 27 54 chrX 124627091 124627459 -52346681 - L1MC4 LINE L1 -1 8041 7684 294 255 29 20 chrX 124628474 124628576 -52345564 - L1ME3A LINE L1 -8 6162 6060 597 211 233 8 chrX 124628770 124629056 -52345084 - L1MD2 LINE L1 -225 6339 6010 624 203 0 0 chrX 124629056 124629174 -52344966 - MER94 DNA DNA 0 134 17 772 250 37 37 chrX 124629186 124629458 -52344682 - L1MD2 LINE L1 -547 6017 5746 598 296 77 31 chrX 124629580 124630097 -52344043 - L1MD2 LINE L1 -3929 2792 2252 357 265 125 63 chrX 124630137 124630594 -52343546 - L1MD2 LINE L1 -4789 1751 1267 357 331 38 25 chrX 124630612 124630772 -52343368 - HAL1 LINE L1 -1513 994 833 2106 153 43 7 chrX 124630781 124631174 -52342966 - L1MC1 LINE L1 0 7763 6133 207 0 0 0 chrX 124631868 124631891 -52342249 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chrX 124631936 124631957 -52342183 + AT_rich Low_complexity Low_complexity 1 21 0 1979 151 0 3 chrX 124633323 124633627 -52340513 + AluSx SINE Alu 1 303 -9 531 130 0 123 chrX 124835006 124835117 -52139023 - L1MA3 LINE L1 -279 5904 5829 2224 100 0 0 chrX 124835117 124835416 -52138724 + AluSq SINE Alu 1 299 -14 531 130 0 123 chrX 124835416 124835445 -52138695 - L1MA3 LINE L1 -354 5829 5798 2073 95 0 4 chrX 124835542 124835816 -52138324 + AluSg SINE Alu 1 273 -37 206 31 0 31 chrX 124835819 124835851 -52138289 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 566 211 0 32 chrX 124836088 124836211 -52137929 + MIR3 SINE MIR 72 190 -18 2302 98 0 16 chrX 124838095 124838306 -52135834 - AluSx SINE Alu 0 344 139 2303 77 0 10 chrX 124838306 124838638 -52135502 - AluY SINE Alu 0 311 1 2302 98 0 16 chrX 124838638 124838775 -52135365 - AluSx SINE Alu -205 139 1 2292 100 0 0 chrX 124839685 124839986 -52134154 - AluSx SINE Alu -10 302 2 215 158 0 0 chrX 124840080 124840118 -52134022 - MIR SINE MIR -88 120 83 192 322 0 123 chrX 124840451 124840622 -52133518 + MIR SINE MIR 2 151 -111 470 222 36 108 chrX 124840622 124840816 -52133324 + MIR SINE MIR 78 257 -5 2221 109 3 0 chrX 124840817 124841120 -52133020 + AluSx SINE Alu 1 304 -8 1129 145 0 0 chrX 124841120 124841292 -52132848 + AluJo/FRAM SINE Alu 134 305 -7 319 276 19 38 chrX 124843988 124844093 -52130047 + MER91B DNA MER1_type 88 190 0 228 230 54 14 chrX 124844131 124844205 -52129935 + L2 LINE L2 1867 1943 -1371 299 377 40 61 chrX 124844341 124844473 -52129667 + L2 LINE L2 2226 2359 -955 2073 117 17 0 chrX 124844473 124844773 -52129367 - AluSx SINE Alu -7 305 1 299 377 40 61 chrX 124844773 124844808 -52129332 + L2 LINE L2 2359 2393 -921 899 41 0 49 chrX 124844808 124844974 -52129166 + L1PA8 LINE L1 6052 6172 0 299 377 40 61 chrX 124844974 124845182 -52128958 + L2 LINE L2 2393 2594 -720 2400 78 0 0 chrX 124845803 124846109 -52128031 + AluSc SINE Alu 1 306 -3 1879 105 61 3 chrX 124846138 124846433 -52127707 + AluSx SINE Alu 1 312 0 2086 110 0 0 chrX 124847229 124847521 -52126619 - AluSx SINE Alu -10 302 11 496 274 91 23 chrX 124847537 124847712 -52126428 + L2 LINE L2 3126 3312 -1 21 0 0 0 chrX 124848546 124848567 -52125573 + GC_rich Low_complexity Low_complexity 1 21 0 247 307 40 10 chrX 124849264 124849365 -52124775 - MIR SINE MIR -98 164 61 207 336 59 17 chrX 124849600 124849719 -52124421 + L2 LINE L2 2927 3050 -222 218 218 0 36 chrX 124850788 124850843 -52123297 + GA-rich Low_complexity Low_complexity 2 54 0 219 69 0 0 chrX 124851036 124851065 -52123075 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 176 0 0 chrX 124851265 124851316 -52122824 + T-rich Low_complexity Low_complexity 1 51 0 2138 95 44 0 chrX 124854003 124854299 -52119841 - AluSq SINE Alu -4 309 1 180 77 0 0 chrX 124854354 124854380 -52119760 + (TC)n Simple_repeat Simple_repeat 1 26 0 1854 125 11 0 chrX 124855765 124856046 -52118094 - AluSx SINE Alu -5 307 24 1761 139 20 27 chrX 124858478 124858779 -52115361 - AluJo SINE Alu -13 299 1 616 220 147 32 chrX 124858785 124859003 -52115137 + MER102a DNA MER1_type 86 328 -2 772 110 0 82 chrX 124859206 124859271 -52114869 + L1M4 LINE L1 5630 5679 -495 1999 120 0 3 chrX 124859271 124859583 -52114557 + AluSx SINE Alu 1 311 0 772 110 0 82 chrX 124859583 124859662 -52114478 + L1M4 LINE L1 5679 5763 -411 3164 157 59 34 chrX 124859667 124860280 -52113860 + L1MB5 LINE L1 5539 6166 -8 461 278 0 9 chrX 124861060 124861168 -52112972 + L2 LINE L2 3193 3299 -14 773 291 68 4 chrX 124861193 124861444 -52112696 - MARNA DNA Mariner -11 575 309 2226 171 55 5 chrX 124861649 124862083 -52112057 + L1MB5 LINE L1 5607 6062 -112 2404 61 0 0 chrX 124862083 124862377 -52111763 + AluY SINE Alu 1 294 -17 1045 126 0 51 chrX 124862377 124862552 -52111588 + AluSg/x SINE Alu 134 299 -13 632 143 25 34 chrX 124862552 124862617 -52111523 + L1MB5 LINE L1 6049 6114 -60 1716 173 3 19 chrX 124862617 124862929 -52111211 - AluJb SINE Alu -5 307 1 632 143 25 34 chrX 124862929 124862982 -52111158 + L1MB5 LINE L1 6114 6166 -8 1788 169 0 0 chrX 124863017 124863329 -52110811 + AluJb SINE Alu 7 312 0 247 293 12 24 chrX 124863857 124863939 -52110201 + L2 LINE L2 3233 3313 0 2266 96 3 6 chrX 124864121 124864434 -52109706 + AluSq SINE Alu 2 313 0 2152 75 3 39 chrX 124864725 124864860 -52109280 + AluSc SINE Alu 1 139 -170 2187 46 64 7 chrX 124864860 124865143 -52108997 + AluY SINE Alu 3 301 -10 351 0 0 0 chrX 124865143 124865182 -52108958 + (TA)n Simple_repeat Simple_repeat 2 40 0 2152 75 3 39 chrX 124865182 124865352 -52108788 + AluSc SINE Alu 137 296 -13 355 83 66 207 chrX 124865563 124865599 -52108541 + L1MB5 LINE L1 6071 6110 -64 1914 142 17 0 chrX 124865599 124865901 -52108239 + AluSx SINE Alu 1 307 -5 355 83 66 207 chrX 124865901 124865928 -52108212 + L1MB5 LINE L1 6110 6139 -35 2240 103 0 3 chrX 124865928 124866239 -52107901 - AluSx SINE Alu -2 310 1 355 83 66 207 chrX 124866239 124866295 -52107845 + L1MB5 LINE L1 6139 6174 0 1792 125 7 28 chrX 124866534 124866822 -52107318 + AluJo SINE Alu 1 282 -30 254 135 0 0 chrX 124866885 124866922 -52107218 + Alu SINE Alu 249 285 -17 2291 68 0 3 chrX 124867002 124867296 -52106844 + AluY SINE Alu 1 293 -18 1330 87 0 0 chrX 124867366 124867538 -52106602 + AluSq SINE Alu 72 243 -70 411 94 0 0 chrX 124867624 124867688 -52106452 - AluJo SINE Alu -4 308 245 918 164 0 7 chrX 124867688 124867840 -52106300 - AluJo SINE Alu -161 151 1 2187 105 0 0 chrX 124870147 124870443 -52103697 + AluSx SINE Alu 1 296 -16 2218 102 13 0 chrX 124871012 124871315 -52102825 - AluSg SINE Alu 0 310 4 2128 110 7 0 chrX 124871775 124872065 -52102075 - AluSx SINE Alu -20 292 1 2211 107 0 0 chrX 124872368 124872666 -52101474 + AluSx SINE Alu 1 298 -14 277 310 0 47 chrX 124873368 124873497 -52100643 + L1ME LINE L1 5570 5692 -429 498 307 78 0 chrX 124873575 124873780 -52100360 + MIR SINE MIR 30 250 -12 2185 106 3 0 chrX 124874927 124875228 -52098912 - AluSx SINE Alu -10 302 1 282 270 56 0 chrX 124875378 124875467 -52098673 + MIR SINE MIR 37 130 -132 1981 147 0 3 chrX 124875546 124875859 -52098281 + AluSx SINE Alu 1 312 0 1998 114 0 4 chrX 124875867 124876147 -52097993 + AluSq SINE Alu 2 280 -33 405 0 0 0 chrX 124876150 124876195 -52097945 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 356 271 33 16 chrX 124876195 124876317 -52097823 + MLT1F-int LTR MaLR 1248 1371 0 2768 190 46 11 chrX 124876317 124876839 -52097301 + MLT1F LTR MaLR 1 540 -2 241 242 45 129 chrX 124877018 124877123 -52097017 + L2 LINE L2 3183 3276 -37 2181 115 0 0 chrX 124877123 124877427 -52096713 - AluSx SINE Alu -8 304 1 241 242 45 129 chrX 124877427 124877453 -52096687 + L2 LINE L2 3276 3303 -10 183 129 0 0 chrX 124878213 124878244 -52095896 + (AGGGGG)n Simple_repeat Simple_repeat 2 32 0 504 332 15 20 chrX 124878383 124878579 -52095561 + MIR SINE MIR 25 219 -43 1947 138 13 13 chrX 124878975 124879286 -52094854 + AluSx SINE Alu 2 312 0 495 234 83 42 chrX 124881097 124881289 -52092851 + MIR SINE MIR 60 259 -3 631 303 5 27 chrX 124882127 124882315 -52091825 + L3 LINE CR1 1378 1561 -16 210 71 0 0 chrX 124883654 124883682 -52090458 + (TCC)n Simple_repeat Simple_repeat 2 29 0 526 260 69 39 chrX 124883988 124884192 -52089948 + MIR SINE MIR 3 212 -50 2332 90 0 0 chrX 124886382 124886692 -52087448 + AluSx SINE Alu 2 311 -1 1885 141 3 13 chrX 124886842 124887141 -52086999 + AluJb SINE Alu 1 296 -16 472 250 7 43 chrX 124888572 124888712 -52085428 - MIR SINE MIR -46 216 82 531 115 0 0 chrX 124889662 124889740 -52084400 + AluS SINE Alu 1 78 -235 830 225 22 89 chrX 124890340 124890418 -52083722 - MIR SINE MIR -3 259 177 1403 142 19 38 chrX 124890418 124890685 -52083455 - L1MB7 LINE L1 0 6184 5923 830 225 22 89 chrX 124890685 124890877 -52083263 - MIR SINE MIR -85 177 7 185 273 36 0 chrX 124890893 124890948 -52083192 + L2 LINE L2 3243 3299 -14 1926 141 20 0 chrX 124890992 124891291 -52082849 + AluJo SINE Alu 1 305 -7 573 239 96 51 chrX 124891298 124891495 -52082645 + MIR SINE MIR 1 206 -56 258 270 27 14 chrX 124891769 124891843 -52082297 + Charlie4 DNA MER1_type 1882 1956 -5 444 394 0 0 chrX 124894913 124895261 -52078879 + G-rich Low_complexity Low_complexity 1 348 0 2040 121 3 16 chrX 124897386 124897701 -52076439 + AluSx SINE Alu 1 311 -1 1208 115 0 31 chrX 124897894 124898085 -52076055 - AluSg/x SINE Alu 0 312 128 2176 80 37 10 chrX 124899445 124899745 -52074395 - AluSp SINE Alu -5 308 1 318 214 0 14 chrX 124899790 124899860 -52074280 + L2 LINE L2 2992 3060 -212 2351 70 3 0 chrX 124900365 124900663 -52073477 + AluSp SINE Alu 1 299 -14 2032 129 14 0 chrX 124900708 124901003 -52073137 + AluSx SINE Alu 1 299 -13 2174 108 0 13 chrX 124901098 124901414 -52072726 - AluSx SINE Alu 0 312 1 1261 114 0 0 chrX 124902058 124902225 -52071915 + AluSg SINE Alu 1 167 -143 197 33 33 0 chrX 124902236 124902266 -52071874 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2509 40 3 0 chrX 124902269 124902569 -52071571 + AluY SINE Alu 1 301 -10 1705 144 0 45 chrX 124902998 124903311 -52070829 + AluSx SINE Alu 1 299 -13 2301 89 0 0 chrX 124904383 124904686 -52069454 + AluSx SINE Alu 1 303 -9 1050 248 20 108 chrX 124905060 124905257 -52068883 - L2 LINE L2 -19 3294 3081 2165 119 6 0 chrX 124905257 124905568 -52068572 + AluSp SINE Alu 1 313 0 1050 248 20 108 chrX 124905568 124905862 -52068278 - L2 LINE L2 -232 3081 2846 292 280 22 50 chrX 124906031 124906222 -52067918 + CT-rich Low_complexity Low_complexity 1 185 0 235 130 37 0 chrX 124906341 124906395 -52067745 + CT-rich Low_complexity Low_complexity 4 59 0 807 301 110 76 chrX 124906400 124907539 -52066601 + L2 LINE L2 2014 3194 -78 2178 116 6 0 chrX 124907539 124907850 -52066290 + AluSp SINE Alu 1 313 0 807 301 110 76 chrX 124907850 124907932 -52066208 + L2 LINE L2 3194 3272 0 297 0 0 0 chrX 124907998 124908031 -52066109 + (CA)n Simple_repeat Simple_repeat 2 34 0 1681 164 96 28 chrX 124908054 124908451 -52065689 + LTR37A LTR ERV1 3 426 0 1889 137 34 0 chrX 124908590 124908882 -52065258 + AluJb SINE Alu 1 302 -10 2113 86 7 0 chrX 124908954 124909233 -52064907 + AluSx SINE Alu 1 281 -31 1897 136 3 0 chrX 124909336 124909630 -52064510 + AluJb SINE Alu 17 311 -1 400 192 13 13 chrX 124910308 124910386 -52063754 - MER5A DNA MER1_type -27 162 85 201 74 0 0 chrX 124910917 124910944 -52063196 + (TA)n Simple_repeat Simple_repeat 1 27 0 2305 88 0 0 chrX 124911110 124911416 -52062724 - AluSg SINE Alu -4 306 1 1793 164 10 3 chrX 124912011 124912315 -52061825 + AluJo SINE Alu 1 306 -6 2090 119 3 0 chrX 124913188 124913491 -52060649 + AluSx SINE Alu 1 304 -8 2127 127 0 0 chrX 124913622 124913921 -52060219 + AluSx SINE Alu 1 299 -13 640 311 35 12 chrX 124914331 124914588 -52059552 - MARNA DNA Mariner -23 563 301 188 200 220 50 chrX 124914735 124914835 -52059305 + MIR SINE MIR 107 223 -39 1878 123 37 7 chrX 124914842 124915142 -52058998 + AluSq SINE Alu 1 309 -4 1752 161 7 10 chrX 124915225 124915524 -52058616 - AluJo SINE Alu -14 298 1 970 101 14 0 chrX 124916072 124916211 -52057929 + AluJb SINE Alu 1 141 -171 1604 157 10 54 chrX 124916460 124916773 -52057367 - AluJo SINE Alu -13 299 1 923 211 0 16 chrX 124916773 124916963 -52057177 + AluJb SINE Alu 119 305 -7 2383 70 0 25 chrX 124916965 124917279 -52056861 + AluSg SINE Alu 2 307 -3 810 164 0 15 chrX 124917287 124917421 -52056719 + AluJo/FLAM SINE Alu 2 133 -169 263 100 180 0 chrX 124917421 124917471 -52056669 + AluSg/x SINE Alu 129 187 -115 1090 152 18 49 chrX 124917471 124917513 -52056627 + AluSg/x SINE Alu 93 135 -175 2059 122 0 10 chrX 124917513 124917824 -52056316 + AluSq SINE Alu 6 313 0 1090 152 18 49 chrX 124917824 124918005 -52056135 + AluSg/x SINE Alu 135 309 -1 2393 70 0 0 chrX 124918397 124918698 -52055442 + AluY SINE Alu 1 301 -10 471 216 120 145 chrX 124918709 124918842 -52055298 - MIR SINE MIR 0 262 127 2229 110 0 0 chrX 124918842 124919151 -52054989 + AluSx SINE Alu 1 309 -3 2140 111 6 16 chrX 124919161 124919476 -52054664 + AluSx SINE Alu 1 312 0 2104 82 7 36 chrX 124919485 124919788 -52054352 + AluY SINE Alu 4 297 -14 471 216 120 145 chrX 124919788 124919874 -52054266 - MIR SINE MIR -152 110 28 233 143 48 0 chrX 124919872 124919914 -52054226 + MER5A DNA MER1_type 146 189 0 * 2216 115 0 0 chrX 124922079 124922391 -52051749 - AluSx SINE Alu 0 312 1 1691 115 16 4 chrX 124922829 124923081 -52051059 + AluSx SINE Alu 53 307 -5 206 289 0 33 chrX 124924559 124924680 -52049460 + C-rich Low_complexity Low_complexity 4 120 0 414 167 0 0 chrX 124924684 124924768 -52049372 + (CGG)n Simple_repeat Simple_repeat 3 86 0 213 169 26 39 chrX 124924768 124924845 -52049295 + (CCCCG)n Simple_repeat Simple_repeat 3 78 0 33 0 0 0 chrX 124925196 124925229 -52048911 + GC_rich Low_complexity Low_complexity 1 33 0 278 250 14 0 chrX 124926451 124926523 -52047617 + GA-rich Low_complexity Low_complexity 1 73 0 205 319 0 0 chrX 124926975 124927047 -52047093 + C-rich Low_complexity Low_complexity 1 72 0 233 315 22 22 chrX 124927889 124928067 -52046073 + C-rich Low_complexity Low_complexity 3 180 0 224 273 11 60 chrX 124927994 124928177 -52045963 + (CCCCG)n Simple_repeat Simple_repeat 1 174 0 * 189 171 0 0 chrX 124928667 124928702 -52045438 + GA-rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chrX 124929059 124929094 -52045046 + GC_rich Low_complexity Low_complexity 1 35 0 245 75 25 0 chrX 124930273 124930313 -52043827 + (CA)n Simple_repeat Simple_repeat 1 41 0 354 306 128 25 chrX 124930883 124931079 -52043061 - MIR SINE MIR -42 220 5 183 378 10 20 chrX 124931183 124931281 -52042859 + MIR3 SINE MIR 3 99 -109 2044 119 6 16 chrX 124931466 124931778 -52042362 - AluJo SINE Alu -3 309 1 23 0 0 0 chrX 124932721 124932744 -52041396 + AT_rich Low_complexity Low_complexity 1 23 0 778 121 0 17 chrX 124932763 124932879 -52041261 - FLAM_C SINE Alu -19 114 1 223 375 85 6 chrX 124932934 124933110 -52041030 + L2 LINE L2 2725 2914 -400 2182 102 3 0 chrX 124933179 124933472 -52040668 + AluSq SINE Alu 1 294 -19 668 144 0 0 chrX 124933494 124933591 -52040549 - FLAM_C SINE Alu -36 107 11 2182 118 0 6 chrX 124933610 124933925 -52040215 - AluSq SINE Alu 0 313 1 2044 115 0 0 chrX 124934015 124934324 -52039816 + AluSx SINE Alu 3 311 0 224 284 42 116 chrX 124934374 124934564 -52039576 + L2 LINE L2 3066 3241 -31 180 156 31 0 chrX 124934565 124934597 -52039543 - MIR SINE MIR -63 145 113 540 235 72 7 chrX 124934666 124934819 -52039321 + MIR SINE MIR 13 175 -87 685 173 8 31 chrX 124934823 124934950 -52039190 + AluJb SINE Alu 2 125 -187 369 233 0 0 chrX 124934968 124935041 -52039099 + MIR SINE MIR 174 246 -16 357 24 0 0 chrX 124935975 124936017 -52038123 + (TC)n Simple_repeat Simple_repeat 2 43 0 238 49 24 24 chrX 124936016 124936057 -52038083 + (TG)n Simple_repeat Simple_repeat 2 42 0 * 435 299 17 34 chrX 124936256 124936433 -52037707 - MER5A DNA MER1_type -6 183 10 768 244 6 0 chrX 124936537 124936713 -52037427 - MIR SINE MIR -11 251 75 1223 186 28 8 chrX 124936724 124936754 -52037386 - L1MB5 LINE L1 -7 6167 6139 2422 91 0 10 chrX 124936754 124937063 -52037077 + AluSg SINE Alu 2 307 -3 1223 186 28 8 chrX 124937063 124937285 -52036855 - L1MB5 LINE L1 -35 6139 5910 693 179 0 0 chrX 124937285 124937402 -52036738 + FLAM_C SINE Alu 1 117 -16 2927 51 8 102 chrX 124937402 124937487 -52036653 + L1PB1 LINE L1 5587 5678 -473 2264 98 24 3 chrX 124937487 124937783 -52036357 + AluSg SINE Alu 1 302 -8 2625 44 0 0 chrX 124937783 124938080 -52036060 + AluY SINE Alu 1 297 -14 2927 51 8 102 chrX 124937784 124938211 -52035929 + L1PB1 LINE L1 5678 5734 -417 2017 138 7 3 chrX 124938211 124938502 -52035638 + AluSx SINE Alu 3 294 -18 2927 51 8 102 chrX 124938502 124938776 -52035364 + L1PB1 LINE L1 5734 6032 -119 2187 118 23 0 chrX 124938776 124939081 -52035059 + AluSx SINE Alu 1 312 0 1327 48 0 0 chrX 124939103 124939268 -52034872 + L1PB1 LINE L1 5985 6149 -2 22 35 0 0 chrX 124939269 124939298 -52034842 + AT_rich Low_complexity Low_complexity 1 29 0 894 144 49 14 chrX 124939302 124939344 -52034796 - L1MB7 LINE L1 -261 5923 5884 2381 113 3 0 chrX 124939344 124939653 -52034487 + AluSq SINE Alu 1 310 -3 894 144 49 14 chrX 124939653 124939821 -52034319 - L1MB7 LINE L1 -300 5884 5752 791 174 8 0 chrX 124939824 124939956 -52034184 - FLAM_C SINE Alu 0 133 1 243 205 12 145 chrX 124939957 124939999 -52034141 - MIR SINE MIR -178 84 57 1934 164 3 10 chrX 124939999 124940297 -52033843 + AluJb SINE Alu 1 296 -16 243 205 12 145 chrX 124940297 124940337 -52033803 - MIR SINE MIR -205 57 13 1433 145 79 59 chrX 124940806 124941096 -52033044 + AluJo SINE Alu 1 296 -16 2254 85 3 7 chrX 124941125 124941431 -52032709 + AluSx SINE Alu 1 305 0 2083 150 0 13 chrX 124941439 124941752 -52032388 + AluJb SINE Alu 3 311 -1 2221 104 3 3 chrX 124941813 124942111 -52032029 + AluSq SINE Alu 1 298 -15 339 202 0 36 chrX 124942577 124942661 -52031479 + L2 LINE L2 3189 3269 -3 2413 79 3 7 chrX 124942973 124943277 -52030863 + AluSg SINE Alu 1 303 -7 1058 84 0 2 chrX 124944133 124944383 -52029757 + AluY SINE Alu 2 311 0 2624 47 3 0 chrX 124944390 124944690 -52029450 + AluY SINE Alu 1 301 -10 482 104 42 0 chrX 124944968 124945064 -52029076 + CT-rich Low_complexity Low_complexity 1 100 0 2006 136 13 23 chrX 124945089 124945398 -52028742 - AluSx SINE Alu -6 306 1 981 112 0 0 chrX 124945847 124945972 -52028168 + AluSq/x SINE Alu 11 135 -177 2330 96 13 10 chrX 124945974 124946277 -52027863 + AluSq SINE Alu 1 304 -9 583 93 0 0 chrX 124946278 124946364 -52027776 + Alu SINE Alu 220 305 -7 2422 94 3 0 chrX 124946448 124946757 -52027383 - AluSq SINE Alu -3 310 1 579 173 0 9 chrX 124948096 124948196 -52025944 + FAM SINE Alu 75 175 -146 2368 84 20 0 chrX 124948196 124948494 -52025646 - AluSx SINE Alu -8 304 1 477 311 44 24 chrX 124948579 124948785 -52025355 + MIR SINE MIR 7 216 -46 240 288 12 12 chrX 124949701 124949781 -52024359 + MIR3 SINE MIR 127 206 -2 202 323 0 32 chrX 124950028 124950090 -52024050 - MIR3 SINE MIR -10 198 139 398 292 50 78 chrX 124950095 124950314 -52023826 - L2 LINE L2 -17 3255 3043 305 221 0 35 chrX 124951614 124951700 -52022440 + G-rich Low_complexity Low_complexity 1 83 0 239 264 22 44 chrX 124952448 124952539 -52021601 - MIR SINE MIR -109 153 65 680 133 33 0 chrX 124952556 124952676 -52021464 + FLAM_C SINE Alu 2 125 -18 275 410 35 27 chrX 124952718 124952979 -52021161 + L2 LINE L2 3008 3270 -2 352 133 13 27 chrX 124953009 124953084 -52021056 + CT-rich Low_complexity Low_complexity 3 76 0 1791 168 6 29 chrX 124953087 124953403 -52020737 - AluJb SINE Alu 0 312 4 753 209 142 22 chrX 124954431 124954656 -52019484 + MIR SINE MIR 7 258 -4 516 56 0 0 chrX 124956073 124956145 -52017995 + (GA)n Simple_repeat Simple_repeat 2 73 0 1997 134 38 0 chrX 124957043 124957335 -52016805 + AluSx SINE Alu 1 303 -9 1691 117 0 0 chrX 124957378 124957600 -52016540 + AluSg/x SINE Alu 68 289 -21 2043 131 10 16 chrX 124958068 124958380 -52015760 - AluJb SINE Alu -2 310 1 228 286 43 0 chrX 124958817 124958887 -52015253 - L2 LINE L2 -2 3270 3198 1951 154 0 0 chrX 124959071 124959363 -52014777 - AluSx SINE Alu -19 293 2 1901 136 0 18 chrX 124959368 124959641 -52014499 - AluJb SINE Alu -21 291 24 2450 82 0 0 chrX 124959649 124959940 -52014200 - AluSx SINE Alu -21 291 1 26 30 0 0 chrX 124959941 124959974 -52014166 + AT_rich Low_complexity Low_complexity 1 33 0 2271 90 28 0 chrX 124960084 124960373 -52013767 - AluSq SINE Alu -16 297 1 614 208 115 26 chrX 124960455 124960681 -52013459 - L1ME4a LINE L1 -91 6030 5785 2378 91 19 0 chrX 124961314 124961621 -52012519 - AluSq SINE Alu 0 313 1 1830 138 9 41 chrX 124961623 124961942 -52012198 - AluJo SINE Alu -3 309 1 2705 42 3 0 chrX 124962078 124962384 -52011756 - AluSc SINE Alu -2 307 1 2456 68 3 0 chrX 124962395 124962687 -52011453 - AluY SINE Alu -18 293 1 2202 109 7 0 chrX 124962949 124963243 -52010897 + AluSx SINE Alu 2 297 -15 601 256 106 31 chrX 124963771 124963998 -52010142 - MIR SINE MIR -11 251 8 1648 165 0 93 chrX 124964026 124964348 -52009792 + AluJo SINE Alu 1 292 -20 422 239 53 107 chrX 124964358 124964601 -52009539 + L1ME4a LINE L1 5022 5250 -967 2618 50 7 0 chrX 124964601 124964903 -52009237 + AluY SINE Alu 1 304 -7 422 239 53 107 chrX 124964903 124965117 -52009023 + L1ME4a LINE L1 5250 5474 -743 2317 119 0 3 chrX 124965131 124965443 -52008697 - AluSx SINE Alu -1 311 1 23 0 0 0 chrX 124965446 124965469 -52008671 + AT_rich Low_complexity Low_complexity 1 23 0 1252 132 0 0 chrX 124965470 124965644 -52008496 + AluSg/x SINE Alu 137 310 -2 34 0 0 0 chrX 124965652 124965686 -52008454 + AT_rich Low_complexity Low_complexity 1 34 0 945 246 8 31 chrX 124965692 124965952 -52008188 - L1ME1 LINE L1 -7 6159 5906 237 216 0 114 chrX 124965973 124966061 -52008079 + L1MC5 LINE L1 7744 7821 -140 795 212 96 53 chrX 124966164 124966497 -52007643 + L1ME4a LINE L1 5684 6001 -120 1743 127 35 50 chrX 124966497 124966643 -52007497 - AluSx SINE Alu -33 279 132 2260 117 10 0 chrX 124966643 124966942 -52007198 - AluSx SINE Alu -10 302 1 2492 97 0 0 chrX 124966945 124967256 -52006884 - AluSx SINE Alu -1 311 1 1743 127 35 50 chrX 124967256 124967388 -52006752 - AluSx SINE Alu -182 130 1 795 212 96 53 chrX 124967388 124967450 -52006690 + L1ME4a LINE L1 6001 6096 -25 369 0 0 0 chrX 124967453 124967494 -52006646 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 473 0 18 0 chrX 124967493 124967550 -52006590 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 829 168 0 0 chrX 124967553 124967672 -52006468 - FLAM_C SINE Alu -24 119 1 504 254 40 64 chrX 124967802 124967975 -52006165 - MIR3 SINE MIR -4 204 36 210 37 0 0 chrX 124968084 124968111 -52006029 + (TG)n Simple_repeat Simple_repeat 2 28 0 710 202 0 0 chrX 124968112 124968231 -52005909 - FLAM_C SINE Alu -14 119 1 232 250 47 0 chrX 124969011 124969075 -52005065 + MIR SINE MIR 98 164 -98 2172 122 10 0 chrX 124969672 124969975 -52004165 - AluSq SINE Alu -7 306 1 273 234 117 36 chrX 124970440 124970551 -52003589 - L2 LINE L2 -212 3060 2941 682 235 106 0 chrX 124971058 124971237 -52002903 + MIR SINE MIR 46 243 -19 240 250 31 0 chrX 124971398 124971462 -52002678 + L1MC4 LINE L1 7910 7975 -67 2548 77 3 0 chrX 124972258 124972611 -52001529 - AluSx SINE Alu 0 354 1 747 285 24 37 chrX 124973457 124973703 -52000437 - MIR SINE MIR 0 262 20 2481 90 0 0 chrX 124975307 124975619 -51998521 - AluSx SINE Alu 0 312 1 227 273 17 34 chrX 124976282 124976458 -51997682 + (CGGG)n Simple_repeat Simple_repeat 3 175 0 * 243 281 18 30 chrX 124976358 124976525 -51997615 + (CGGGG)n Simple_repeat Simple_repeat 4 168 0 * 362 215 20 47 chrX 124976442 124976591 -51997549 + G-rich Low_complexity Low_complexity 6 150 0 627 131 0 0 chrX 124979870 124979969 -51994171 - AluSg/x SINE Alu -10 299 201 2656 37 3 0 chrX 124980157 124980454 -51993686 - AluY SINE Alu -13 298 1 2437 61 13 29 chrX 124980517 124980829 -51993311 - AluY SINE Alu -4 307 1 277 318 156 17 chrX 124980853 124981026 -51993114 - MIR3 SINE MIR -10 198 2 2313 118 0 0 chrX 124981121 124981426 -51992714 + AluSx SINE Alu 1 305 -7 277 178 137 0 chrX 124982058 124982131 -51992009 - L3 LINE CR1 -9 1568 1486 182 315 215 0 chrX 124982189 124982338 -51991802 - L3 LINE CR1 -298 1279 1099 201 241 181 12 chrX 124983151 124983234 -51990906 - L3 LINE CR1 -328 1249 1153 183 300 0 0 chrX 124984187 124984227 -51989913 - L2 LINE L2 -10 3303 3264 2502 73 3 0 chrX 124984343 124984644 -51989496 + AluY SINE Alu 1 302 -9 1538 162 17 50 chrX 124984667 124984964 -51989176 + AluJo SINE Alu 11 297 -15 247 276 42 0 chrX 124984971 124985056 -51989084 + MIR SINE MIR 32 118 -112 1961 139 21 0 chrX 124985353 124985633 -51988507 + AluSx SINE Alu 1 286 -26 1828 168 26 7 chrX 124986211 124986515 -51987625 + AluJo SINE Alu 1 310 -2 2076 147 0 0 chrX 124988729 124989021 -51985119 - AluSx SINE Alu -20 292 1 752 113 9 0 chrX 124989022 124989128 -51985012 - AluJb SINE Alu -204 108 2 2618 50 3 0 chrX 124990029 124990331 -51983809 - AluY SINE Alu -8 303 1 1917 140 0 13 chrX 124990511 124990811 -51983329 - AluJo SINE Alu -3 309 14 885 105 0 0 chrX 124991100 124991214 -51982926 + AluJb SINE Alu 5 118 -194 384 281 59 26 chrX 124991739 124991892 -51982248 - L2 LINE L2 0 3272 3115 254 292 48 72 chrX 124992179 124992660 -51981480 - L2 LINE L2 -540 2774 2257 2543 39 0 3 chrX 124992690 124992976 -51981164 + AluY SINE Alu 17 301 -10 201 305 43 43 chrX 124993057 124993198 -51980942 - L2 LINE L2 -1321 1993 1853 2641 57 0 0 chrX 124993384 124993684 -51980456 - AluY SINE Alu -11 300 1 2123 132 0 10 chrX 124993691 124993995 -51980145 - AluSx SINE Alu -8 304 4 1908 135 0 0 chrX 124994373 124994633 -51979507 - AluSx SINE Alu -52 260 1 2351 92 0 29 chrX 124994914 124995229 -51978911 - AluSx SINE Alu -6 306 1 326 202 163 74 chrX 124995268 124995471 -51978669 + L1MC4a LINE L1 5853 6073 -1735 2229 104 0 29 chrX 124996506 124996815 -51977325 + AluSx SINE Alu 1 300 -12 2098 75 48 0 chrX 124997358 124997626 -51976514 - AluSq SINE Alu -31 282 2 730 260 58 67 chrX 124998162 124998241 -51975899 + L2 LINE L2 2636 2714 -599 1368 179 102 21 chrX 124998241 124998526 -51975614 - AluJb SINE Alu -4 308 1 730 260 58 67 chrX 124998526 124998937 -51975203 + L2 LINE L2 2714 3118 -195 778 121 30 132 chrX 124999207 124999419 -51974721 + MER106B DNA MER1_type 1 176 -60 2533 66 0 0 chrX 124999419 124999721 -51974419 + AluY SINE Alu 1 302 -9 778 121 30 132 chrX 124999721 124999777 -51974363 + MER106B DNA MER1_type 176 236 0 243 188 0 72 chrX 125000649 125000718 -51973422 - MIR SINE MIR 0 262 199 2384 81 3 0 chrX 125000955 125001252 -51972888 - AluY SINE Alu -13 298 1 376 97 28 28 chrX 125001590 125001662 -51972478 + L1PA16 LINE L1 6095 6166 0 249 258 30 15 chrX 125003157 125003223 -51970917 - L2 LINE L2 -20 3252 3186 2277 107 0 0 chrX 125003408 125003708 -51970432 - AluSx SINE Alu -12 300 1 24 0 0 0 chrX 125003708 125003732 -51970408 + AT_rich Low_complexity Low_complexity 1 24 0 2409 75 0 10 chrX 125003760 125004065 -51970075 - AluY SINE Alu -9 302 1 365 316 32 32 chrX 125004068 125004227 -51969913 + L2 LINE L2 1818 1980 -1334 2247 80 0 14 chrX 125004227 125004419 -51969721 - AluSq SINE Alu 0 325 137 2498 63 3 0 chrX 125004419 125004721 -51969419 - AluY SINE Alu -8 303 1 2247 80 0 14 chrX 125004721 125004857 -51969283 - AluSq SINE Alu -188 137 1 365 316 32 32 chrX 125004857 125004886 -51969254 + L2 LINE L2 1979 2007 -1307 * 445 195 55 39 chrX 125004868 125004996 -51969144 - L2 LINE L2 -6 3307 3178 579 307 121 30 chrX 125005000 125005462 -51968678 + L2 LINE L2 1990 2493 -821 365 199 18 193 chrX 125005665 125005756 -51968384 + MIR SINE MIR 15 120 -142 2165 99 3 3 chrX 125005756 125006038 -51968102 - AluSx SINE Alu -30 282 1 365 199 18 193 chrX 125006038 125006079 -51968061 + MIR SINE MIR 120 116 -146 1981 129 0 61 chrX 125006079 125006405 -51967735 - AluSx SINE Alu -4 308 3 365 199 18 193 chrX 125006405 125006437 -51967703 + MIR SINE MIR 115 151 -111 830 132 7 37 chrX 125006437 125006573 -51967567 + FLAM_C SINE Alu 1 132 -1 549 37 37 24 chrX 125006631 125006713 -51967427 - MER2 DNA MER2_type -135 210 128 2134 97 14 7 chrX 125006717 125007007 -51967133 + AluSx SINE Alu 1 292 -20 474 178 0 0 chrX 125007007 125007097 -51967043 + (TAAAG)n Simple_repeat Simple_repeat 2 91 0 800 165 24 0 chrX 125007111 125007238 -51966902 - MER2 DNA MER2_type -213 132 3 1038 273 123 74 chrX 125007696 125007789 -51966351 - L2 LINE L2 -242 3030 2943 2250 96 20 0 chrX 125007789 125008092 -51966048 + AluSx SINE Alu 1 309 -3 1038 273 123 74 chrX 125008092 125008113 -51966027 - L2 LINE L2 -329 2943 2924 1478 168 32 52 chrX 125008113 125008309 -51965831 + AluJb SINE Alu 1 190 -122 2259 93 3 23 chrX 125008309 125008610 -51965530 + AluSx SINE Alu 1 295 -17 1478 168 32 52 chrX 125008610 125008723 -51965417 + AluJb SINE Alu 190 304 -8 1038 273 123 74 chrX 125008723 125009242 -51964898 - L2 LINE L2 -348 2924 2354 2238 97 3 3 chrX 125009259 125009559 -51964581 - AluSx SINE Alu -11 301 2 1618 155 180 6 chrX 125009970 125010031 -51964109 - L1MD1 LINE L1 0 6242 6193 2312 94 3 3 chrX 125010031 125010329 -51963811 + AluSx SINE Alu 5 302 -10 1618 155 180 6 chrX 125010329 125010622 -51963518 - L1MD1 LINE L1 -49 6193 5826 839 158 0 22 chrX 125010627 125010766 -51963374 - FLAM_C SINE Alu -7 136 1 1740 162 13 32 chrX 125010775 125011089 -51963051 - AluJb SINE Alu -4 308 1 1991 160 43 15 chrX 125011095 125011294 -51962846 - L1MB8 LINE L1 -51 6127 5929 356 292 88 9 chrX 125011294 125011520 -51962620 - L1PB2 LINE L1 -226 5925 5682 2477 82 3 0 chrX 125011526 125011830 -51962310 - AluSq SINE Alu -8 305 1 599 248 69 30 chrX 125011903 125012105 -51962035 - MER63A DNA MER1_type 0 210 1 2047 155 0 3 chrX 125012299 125012608 -51961532 + AluJb SINE Alu 1 308 -4 31 20 0 20 chrX 125012657 125012685 -51961455 + AT_rich Low_complexity Low_complexity 1 29 -19 1920 162 0 3 chrX 125012685 125012982 -51961158 - AluJo SINE Alu -14 298 3 31 20 0 20 chrX 125012982 125013002 -51961138 + AT_rich Low_complexity Low_complexity 29 48 0 484 158 95 11 chrX 125013004 125013099 -51961041 - FLAM_A SINE Alu -27 115 13 841 136 0 50 chrX 125013121 125013261 -51960879 + FLAM_C SINE Alu 1 133 0 1579 168 0 15 chrX 125013440 125013702 -51960438 - AluJo SINE Alu -16 296 39 1893 180 3 0 chrX 125013918 125014229 -51959911 + AluJo SINE Alu 1 312 0 1700 185 0 29 chrX 125014361 125014669 -51959471 + AluJo SINE Alu 1 299 -13 32 67 0 0 chrX 125014706 125014766 -51959374 + AT_rich Low_complexity Low_complexity 1 60 0 245 195 85 110 chrX 125014786 125014812 -51959328 - L1MDa LINE L1 -4470 2070 2045 2414 68 10 0 chrX 125014812 125015104 -51959036 - AluY SINE Alu -16 295 1 245 195 85 110 chrX 125015104 125015241 -51958899 - L1MDa LINE L1 -4495 2045 1911 2058 157 0 0 chrX 125015259 125015558 -51958582 + AluSx SINE Alu 1 299 -13 2151 130 0 0 chrX 125015618 125015918 -51958222 + AluSx SINE Alu 5 304 -8 3009 176 41 27 chrX 125015925 125016556 -51957584 - L1MB8 LINE L1 -16 6162 5523 341 179 0 134 chrX 125016561 125016605 -51957535 - L1MDa LINE L1 -4757 1964 1942 2223 135 0 0 chrX 125016605 125016917 -51957223 + AluSx SINE Alu 1 312 0 341 179 0 134 chrX 125016917 125016984 -51957156 - L1MDa LINE L1 -4779 1942 1868 263 54 54 36 chrX 125017024 125017080 -51957060 - L1MB3 LINE L1 0 6183 6127 2419 88 0 0 chrX 125017119 125017414 -51956726 - AluSg SINE Alu -15 295 1 455 161 0 102 chrX 125017419 125017467 -51956673 - L1MB3 LINE L1 -45 6138 6087 869 135 0 15 chrX 125017467 125017600 -51956540 + FLAM_C SINE Alu 3 133 0 455 161 0 102 chrX 125017600 125017669 -51956471 - L1MB3 LINE L1 -96 6087 6033 594 246 79 52 chrX 125017669 125017842 -51956298 - L1MDa LINE L1 -4715 1825 1640 2177 107 0 0 chrX 125017842 125018153 -51955987 - AluY SINE Alu 0 311 1 594 246 79 52 chrX 125018153 125018230 -51955910 - L1MDa LINE L1 -4900 1640 1567 1787 263 59 61 chrX 125018245 125018382 -51955758 - L1M4 LINE L1 -1252 4894 4758 774 150 0 30 chrX 125018382 125018515 -51955625 - FLAM_A SINE Alu 0 133 5 1787 263 59 61 chrX 125018515 125018650 -51955490 - L1M4 LINE L1 -1388 4758 4624 1989 142 7 0 chrX 125018650 125018931 -51955209 - AluSx SINE Alu -29 283 1 1787 263 59 61 chrX 125018931 125019810 -51954330 - L1M4 LINE L1 -1522 4624 3744 3354 158 78 42 chrX 125019819 125020177 -51953963 - L1MC3 LINE L1 -154 7631 7287 1888 124 41 75 chrX 125020177 125020565 -51953575 - THE1C LTR MaLR 0 375 1 3354 158 78 42 chrX 125020565 125020927 -51953213 - L1MC3 LINE L1 -498 7287 6885 216 0 0 0 chrX 125021053 125021077 -51953063 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2731 208 28 15 chrX 125021087 125021735 -51952405 - L1MEc LINE L1 -1760 4455 3800 1229 171 44 22 chrX 125021750 125022024 -51952116 - L1MB8 LINE L1 0 6178 5899 2258 131 0 0 chrX 125022032 125022344 -51951796 - AluSx SINE Alu 0 312 1 1373 217 3 3 chrX 125022344 125022662 -51951478 - L1MEc LINE L1 -3213 3002 2685 1262 233 7 22 chrX 125022671 125022942 -51951198 + MLT1E LTR MaLR 327 593 0 1397 181 18 65 chrX 125022942 125023155 -51950985 - L1MEc LINE L1 -3687 2528 2307 1539 159 12 87 chrX 125023155 125023488 -51950652 - AluJo SINE Alu -4 308 1 1397 181 18 65 chrX 125023488 125023608 -51950532 - L1MEc LINE L1 -3908 2307 2263 1957 144 3 0 chrX 125023608 125023900 -51950240 - AluJo SINE Alu -6 306 14 1397 181 18 65 chrX 125023900 125024050 -51950090 - L1MEc LINE L1 -3952 2263 2108 2261 118 0 3 chrX 125024082 125024395 -51949745 - AluSx SINE Alu 0 312 1 799 149 156 0 chrX 125024429 125024570 -51949570 + FAM SINE Alu 1 163 -12 1704 133 7 11 chrX 125024602 125024888 -51949252 + L1MB3 LINE L1 5897 6181 -2 3142 205 51 58 chrX 125024890 125025519 -51948621 + L1M4 LINE L1 3958 4579 -1567 1100 151 0 0 chrX 125025519 125025685 -51948455 + FRAM SINE Alu 1 166 0 3142 205 51 58 chrX 125025685 125026032 -51948108 + L1M4 LINE L1 4579 4927 -1219 761 143 29 29 chrX 125026032 125026172 -51947968 + L1MA8 LINE L1 6142 6281 -10 24 32 0 0 chrX 125026172 125026203 -51947937 + AT_rich Low_complexity Low_complexity 1 31 0 1547 200 200 73 chrX 125026233 125026714 -51947426 + MLT1E2 LTR MaLR 85 626 0 458 181 57 129 chrX 125026723 125026863 -51947277 - L1M4 LINE L1 -3819 2327 2205 1951 121 14 24 chrX 125026863 125027152 -51946988 - AluJb SINE Alu -21 291 6 458 181 57 129 chrX 125027152 125027221 -51946919 - L1M4 LINE L1 -3941 2205 2133 1962 130 108 12 chrX 125027720 125028236 -51945904 + MER51A LTR ERV1 1 634 0 2140 116 0 3 chrX 125028253 125028561 -51945579 + AluSx SINE Alu 1 307 0 1965 113 10 33 chrX 125029055 125029355 -51944785 + AluSx SINE Alu 3 295 -17 2231 52 42 14 chrX 125029368 125029654 -51944486 + AluY SINE Alu 1 294 -17 5308 131 21 6 chrX 125030192 125031062 -51943078 + L1PB4 LINE L1 5288 6303 0 1640 86 36 0 chrX 125031078 125031299 -51942841 + MER30 DNA MER1_type 2 230 0 3899 131 86 16 chrX 125031965 125032678 -51941462 - LTR1B LTR ERV1 0 785 1 949 190 0 0 chrX 125032692 125032855 -51941285 - FRAM SINE Alu -11 165 3 3919 103 7 0 chrX 125033623 125034166 -51939974 - MER41B LTR ERV1 -88 547 1 2101 113 0 0 chrX 125034221 125034530 -51939610 - AluSx SINE Alu 0 309 1 6767 74 42 39 chrX 125034532 125035236 -51938904 - MER41B-int LTR ERV1 -25 5921 5221 1820 142 0 0 chrX 125035236 125035489 -51938651 - AluSx SINE Alu -17 295 43 6767 74 42 39 chrX 125035489 125035567 -51938573 - MER41B-int LTR ERV1 -725 5221 5145 2353 84 0 7 chrX 125035567 125035865 -51938275 - AluY SINE Alu -15 296 1 6767 74 42 39 chrX 125035865 125036057 -51938083 - MER41B-int LTR ERV1 -801 5145 4943 248 241 78 69 chrX 125037682 125037798 -51936342 + HAL1b LINE L1 817 933 -415 1703 135 17 40 chrX 125037922 125038219 -51935921 + AluJb SINE Alu 1 290 -22 1483 166 7 22 chrX 125038267 125038538 -51935602 + AluJb SINE Alu 1 267 -45 1752 118 44 11 chrX 125038562 125038863 -51935277 - AluSg SINE Alu 0 310 1 2096 114 7 0 chrX 125038915 125039212 -51934928 + AluSx SINE Alu 1 299 -13 457 360 95 13 chrX 125039216 125039366 -51934774 - L2 LINE L2 -800 2514 2378 2040 207 99 0 chrX 125039366 125039839 -51934301 + MLT2B1 LTR ERVL 1 520 0 457 360 95 13 chrX 125039839 125039994 -51934146 - L2 LINE L2 -936 2378 2184 240 338 0 0 chrX 125040005 125040085 -51934055 - L2 LINE L2 -1798 1516 1437 861 210 6 0 chrX 125041048 125041215 -51932925 + MLT1B LTR MaLR 223 390 0 1744 146 59 0 chrX 125041289 125041576 -51932564 - AluJb SINE Alu -8 304 1 2376 90 0 0 chrX 125041607 125041907 -51932233 + AluSx SINE Alu 1 300 -12 1825 49 0 0 chrX 125042284 125042508 -51931632 - L1PA8A LINE L1 -177 5954 5731 369 115 0 49 chrX 125042508 125042568 -51931572 + L1PA8A LINE L1 6074 6131 0 252 0 0 0 chrX 125042716 125042744 -51931396 + (TG)n Simple_repeat Simple_repeat 2 29 0 1471 170 0 66 chrX 125043030 125043347 -51930793 - AluJo SINE Alu -16 296 1 2152 109 0 0 chrX 125043505 125043798 -51930342 + AluSq SINE Alu 1 293 -20 2375 81 0 0 chrX 125044778 125045076 -51929064 + AluSx SINE Alu 3 300 -12 800 202 181 21 chrX 125045204 125045392 -51928748 - MER20 DNA MER1_type 0 219 2 207 0 0 0 chrX 125045448 125045471 -51928669 + (T)n Simple_repeat Simple_repeat 1 23 0 868 38 9 0 chrX 125045491 125045596 -51928544 - AluSp SINE Alu -170 143 38 971 163 25 0 chrX 125045624 125045784 -51928356 + FAM SINE Alu 2 165 -10 1662 161 0 14 chrX 125045820 125046100 -51928040 + AluJo SINE Alu 1 276 -36 216 67 0 0 chrX 125046108 125046138 -51928002 + (TAA)n Simple_repeat Simple_repeat 2 31 0 440 204 0 80 chrX 125046290 125046324 -51927816 - L2 LINE L2 0 3313 3278 1791 172 32 71 chrX 125046324 125046730 -51927410 - MLT1B LTR MaLR 0 390 1 440 204 0 80 chrX 125046730 125046808 -51927332 - L2 LINE L2 -35 3278 3210 2139 103 0 0 chrX 125046813 125047105 -51927035 + AluSx SINE Alu 6 297 -15 1352 245 57 18 chrX 125047105 125047545 -51926595 - L2 LINE L2 -251 3062 2608 1700 171 7 0 chrX 125047760 125048053 -51926087 - AluJo SINE Alu -17 295 1 276 335 43 6 chrX 125048095 125048256 -51925884 - HAL1b LINE L1 -436 912 746 266 293 0 0 chrX 125048313 125048395 -51925745 - HAL1 LINE L1 -355 2152 2071 1951 138 20 0 chrX 125048614 125048950 -51925190 - AluSx SINE Alu 0 342 1 21 0 0 0 chrX 125049037 125049058 -51925082 + AT_rich Low_complexity Low_complexity 1 21 0 947 149 0 23 chrX 125049390 125049564 -51924576 + FRAM SINE Alu 1 163 -13 39583 54 2 1 chrX 125049566 125055288 -51918852 + L1PA5 LINE L1 433 6164 0 2058 112 3 13 chrX 125055288 125055616 -51918524 + AluSc SINE Alu 1 309 0 225 264 35 11 chrX 125055711 125055798 -51918342 + GA-rich Low_complexity Low_complexity 4 92 0 243 282 0 32 chrX 125056719 125056843 -51917297 + CT-rich Low_complexity Low_complexity 3 122 0 6059 68 7 64 chrX 125056895 125058091 -51916049 - SVA Other Other -589 1386 432 5658 60 20 52 chrX 125058108 125059183 -51914957 - SVA Other Other -520 866 1 463 0 90 0 chrX 125059185 125059252 -51914888 + GA-rich Low_complexity Low_complexity 1 73 0 2275 95 3 0 chrX 125059273 125059579 -51914561 - AluSx SINE Alu -5 307 1 376 253 101 84 chrX 125059671 125059968 -51914172 - L1ME LINE L1 -297 5824 5523 243 297 14 65 chrX 125060083 125060221 -51913919 + L2 LINE L2 3181 3311 -2 201 234 156 16 chrX 125060359 125060423 -51913717 + MIR SINE MIR 178 250 -12 2023 121 0 0 chrX 125060703 125061001 -51913139 - AluSx SINE Alu -14 298 1 588 263 49 25 chrX 125061478 125061654 -51912486 - MIR SINE MIR -62 146 2 297 89 0 0 chrX 125062090 125062135 -51912005 + (CA)n Simple_repeat Simple_repeat 2 46 0 248 341 73 8 chrX 125062159 125062282 -51911858 + MARNA DNA Mariner 42 172 -414 387 105 0 0 chrX 125062282 125062339 -51911801 + (TC)n Simple_repeat Simple_repeat 2 58 0 1763 107 72 0 chrX 125062340 125062602 -51911538 - AluSx SINE Alu -31 281 1 2124 100 3 0 chrX 125063808 125064107 -51910033 - AluSx SINE Alu -12 300 1 264 200 0 0 chrX 125064681 125064736 -51909404 + (TG)n Simple_repeat Simple_repeat 2 56 0 208 245 0 0 chrX 125065383 125065432 -51908708 + (TG)n Simple_repeat Simple_repeat 1 49 0 425 276 16 57 chrX 125066473 125066596 -51907544 + MIR3 SINE MIR 81 198 -10 203 302 10 21 chrX 125069052 125069148 -51904992 + GA-rich Low_complexity Low_complexity 4 98 0 186 171 0 0 chrX 125069172 125069213 -51904927 + (TG)n Simple_repeat Simple_repeat 2 42 0 1982 94 45 7 chrX 125069421 125069707 -51904433 + AluSx SINE Alu 7 303 -9 1933 136 13 0 chrX 125070236 125070538 -51903602 - AluSx SINE Alu -6 306 1 200 298 105 32 chrX 125071601 125071725 -51902415 + L2 LINE L2 3176 3308 -5 373 262 93 9 chrX 125071763 125071870 -51902270 - MIR3 SINE MIR -4 204 89 2022 106 0 26 chrX 125072343 125072668 -51901472 + AluSq SINE Alu 1 313 0 2353 80 3 3 chrX 125073114 125073426 -51900714 - AluSp SINE Alu 0 313 2 1951 151 0 0 chrX 125073452 125073763 -51900377 - AluJb SINE Alu -1 311 1 2006 166 29 9 chrX 125074605 125074954 -51899186 - MLT1A1 LTR MaLR 0 365 10 2073 109 3 10 chrX 125075943 125076109 -51898031 - AluSx SINE Alu -10 302 136 273 29 0 0 chrX 125076109 125076143 -51897997 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2275 71 0 0 chrX 125076143 125076426 -51897714 - AluY SINE Alu -28 283 1 2073 109 3 10 chrX 125076426 125076562 -51897578 - AluSx SINE Alu -174 138 1 1565 113 28 77 chrX 125076729 125077056 -51897084 - L1MA8 LINE L1 -3 6288 5978 760 239 103 68 chrX 125078494 125078728 -51895412 - MIR SINE MIR -2 260 19 548 278 21 0 chrX 125078871 125079015 -51895125 + MIR SINE MIR 110 256 -6 291 327 50 31 chrX 125079593 125079752 -51894388 - L2 LINE L2 -14 3258 3097 486 109 11 98 chrX 125080260 125080279 -51893861 - MER51A LTR ERV1 -81 553 534 2024 111 0 4 chrX 125080279 125080587 -51893553 - AluSc SINE Alu 0 307 1 486 109 11 98 chrX 125080587 125080658 -51893482 - MER51A LTR ERV1 -100 534 470 2316 83 0 6 chrX 125080811 125081125 -51893015 + AluSx SINE Alu 1 312 0 401 154 0 13 chrX 125081618 125081696 -51892444 + CT-rich Low_complexity Low_complexity 4 80 0 1942 136 13 0 chrX 125081709 125082017 -51892123 - AluSx SINE Alu 0 312 1 235 350 31 21 chrX 125082310 125082407 -51891733 - MIR3 SINE MIR -49 159 62 611 265 36 36 chrX 125082889 125083108 -51891032 + L1ME4a LINE L1 5497 5715 -406 699 198 100 52 chrX 125083315 125083644 -51890496 + L1ME4a LINE L1 5733 6077 -44 1616 102 0 0 chrX 125083691 125083907 -51890233 - AluSx SINE Alu -96 216 1 746 281 117 23 chrX 125084056 125084338 -51889802 - L1ME4a LINE L1 -239 5882 5628 2088 109 0 20 chrX 125084338 125084640 -51889500 + AluSx SINE Alu 1 296 -16 746 281 117 23 chrX 125084640 125084845 -51889295 - L1ME4a LINE L1 -493 5628 5346 599 227 189 29 chrX 125085650 125085864 -51888276 - MIR SINE MIR -8 254 16 5648 45 6 0 chrX 125086304 125086977 -51887163 - L1PA8 LINE L1 -7 6165 5489 1455 92 0 0 chrX 125086986 125087170 -51886970 - AluSg/x SINE Alu -11 299 116 1727 91 5 0 chrX 125087270 125087491 -51886649 + AluY SINE Alu 80 301 -10 2214 59 26 3 chrX 125087491 125087788 -51886352 - L1P4 LINE L1 -518 5650 5344 1792 45 27 0 chrX 125087788 125088009 -51886131 + L1PA10 LINE L1 5936 6165 -3 1788 166 0 36 chrX 125088182 125088484 -51885656 - AluJb SINE Alu -21 291 1 752 279 23 26 chrX 125088542 125088785 -51885355 + L1ME4a LINE L1 5535 5779 -342 1873 128 21 18 chrX 125088785 125089089 -51885051 + AluSx SINE Alu 1 305 0 752 279 23 26 chrX 125089089 125089109 -51885031 + L1ME4a LINE L1 5779 5798 -323 227 271 82 48 chrX 125089112 125089319 -51884821 + L1ME4a LINE L1 5847 6060 -61 323 117 143 0 chrX 125089335 125089412 -51884728 + L1ME4a LINE L1 6032 6119 -2 2491 68 0 3 chrX 125089581 125089891 -51884249 - AluY SINE Alu -2 309 1 286 232 0 0 chrX 125089919 125089988 -51884152 - L1ME4a LINE L1 -4 6117 6049 444 250 24 30 chrX 125090049 125090217 -51883923 - L1ME4a LINE L1 -211 5910 5744 3984 124 33 12 chrX 125090274 125090418 -51883722 + L1MB4 LINE L1 5505 5644 -536 1791 202 39 31 chrX 125090418 125090805 -51883335 - MLT1B LTR MaLR 0 390 1 3984 124 33 12 chrX 125090805 125091319 -51882821 + L1MB4 LINE L1 5644 6177 -3 286 98 0 0 chrX 125091319 125091360 -51882780 - Alu SINE Alu -10 292 252 1934 114 29 0 chrX 125091460 125091732 -51882408 + AluSq SINE Alu 33 312 -1 644 252 55 58 chrX 125091732 125092077 -51882063 - L1ME4a LINE L1 -428 5693 5350 308 177 0 76 chrX 125092102 125092181 -51881959 + Tigger2 DNA MER2_type 1 73 -2645 742 214 16 44 chrX 125092226 125092408 -51881732 + MER8 DNA MER2_type 1 177 -62 243 224 103 0 chrX 125092385 125092443 -51881697 + MER2 DNA MER2_type 282 345 0 * 426 154 0 13 chrX 125092443 125092514 -51881626 - Tigger2 DNA MER2_type -2648 70 1 535 216 17 0 chrX 125092514 125092620 -51881520 - MER8 DNA MER2_type -83 156 49 623 68 43 77 chrX 125092625 125092742 -51881398 - L1MA9 LINE L1 -90 6222 6110 573 288 109 106 chrX 125092743 125092901 -51881239 - L1ME4a LINE L1 -814 5332 5176 640 62 0 10 chrX 125092901 125092998 -51881142 - L1MA2 LINE L1 0 6304 6209 573 288 109 106 chrX 125092998 125093426 -51880714 - L1ME4a LINE L1 -970 5176 4744 492 250 46 46 chrX 125093509 125093661 -51880479 + MIR SINE MIR 65 216 -46 218 265 0 0 chrX 125094376 125094425 -51879715 + (CA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chrX 125095042 125095064 -51879076 + AT_rich Low_complexity Low_complexity 1 22 0 1505 78 0 10 chrX 125095271 125095463 -51878677 - AluSg SINE Alu -97 213 24 2345 104 0 3 chrX 125096218 125096517 -51877623 + AluSx SINE Alu 1 298 -14 280 245 118 46 chrX 125096523 125096760 -51877380 - L1ME4a LINE L1 -18 6103 5850 323 127 0 36 chrX 125096833 125096888 -51877252 - 7SK RNA RNA -140 53 1 504 108 121 0 chrX 125096889 125096972 -51877168 - L1MB3 LINE L1 -56 6127 6035 266 228 20 20 chrX 125096988 125097089 -51877051 + T-rich Low_complexity Low_complexity 3 103 0 554 278 77 26 chrX 125097864 125098058 -51876082 - L2 LINE L2 0 3313 3110 2194 94 7 0 chrX 125098247 125098534 -51875606 - AluSg1 SINE Alu -20 289 1 5204 168 14 14 chrX 125098542 125098594 -51875546 - L1MB7 LINE L1 0 6184 6133 2268 79 38 3 chrX 125098594 125098886 -51875254 - AluSx SINE Alu -10 302 1 5204 168 14 14 chrX 125098886 125100764 -51873376 - L1MB7 LINE L1 -51 6133 4252 2080 108 7 4 chrX 125100905 125101184 -51872956 - AluSq SINE Alu -33 280 1 2846 19 0 0 chrX 125101246 125101557 -51872583 - AluYb8 SINE Alu -7 311 1 23 0 0 0 chrX 125101679 125101702 -51872438 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chrX 125103344 125103365 -51870775 + (TCTCC)n Simple_repeat Simple_repeat 1 21 0 213 159 0 0 chrX 125104340 125104384 -51869756 + GA-rich Low_complexity Low_complexity 1 44 0 1232 192 59 13 chrX 125105744 125106051 -51868089 + MER20B DNA MER1_type 190 510 -273 528 261 6 6 chrX 125106047 125106204 -51867936 + MER20B DNA MER1_type 627 783 0 * 476 223 168 34 chrX 125106316 125106554 -51867586 - L1ME4a LINE L1 -29 6092 5823 1777 171 7 7 chrX 125106555 125106854 -51867286 - AluSx SINE Alu -13 299 1 2624 50 0 0 chrX 125106862 125107162 -51866978 - AluY SINE Alu -11 300 1 926 246 78 50 chrX 125107202 125107455 -51866685 - L1ME4a LINE L1 -372 5749 5478 2234 120 0 0 chrX 125107455 125107756 -51866384 - AluSx SINE Alu -11 301 1 926 246 78 50 chrX 125107756 125107924 -51866216 - L1ME4a LINE L1 -643 5478 5316 192 77 0 0 chrX 125108280 125108306 -51865834 + (TC)n Simple_repeat Simple_repeat 1 26 0 358 217 48 36 chrX 125108318 125108401 -51865739 - MIR SINE MIR -104 104 21 361 301 119 30 chrX 125109968 125110204 -51863936 - MIR SINE MIR -3 259 3 850 295 30 8 chrX 125110286 125110523 -51863617 - MIR SINE MIR -7 255 14 21 71 0 0 chrX 125111303 125111345 -51862795 + AT_rich Low_complexity Low_complexity 1 42 0 2034 135 0 40 chrX 125111667 125111992 -51862148 + AluJo SINE Alu 1 312 0 589 236 99 52 chrX 125112000 125112233 -51861907 - L1ME4a LINE L1 -265 5856 5613 769 247 138 9 chrX 125112295 125112526 -51861614 + MIR SINE MIR 2 262 0 286 314 144 17 chrX 125113943 125114061 -51860079 - MIR3 SINE MIR -11 197 65 284 221 70 23 chrX 125115006 125115092 -51859048 + MIR SINE MIR 33 122 -140 202 216 0 0 chrX 125115831 125115868 -51858272 + GA-rich Low_complexity Low_complexity 4 40 0 421 316 10 47 chrX 125116377 125116570 -51857570 - MIR3 SINE MIR -10 198 13 502 255 92 26 chrX 125117119 125117272 -51856868 + MIR SINE MIR 81 243 -19 235 237 191 77 chrX 125117566 125117703 -51856437 + MIR SINE MIR 12 163 -61 272 277 48 0 chrX 125117905 125117988 -51856152 - MIR SINE MIR -71 191 105 790 187 84 33 chrX 125118131 125118345 -51855795 + MER63 DNA MER1_type 696 920 -141 735 181 22 22 chrX 125118358 125118496 -51855644 - FLAM_A SINE Alu -3 139 2 706 154 0 74 chrX 125118512 125118661 -51855479 + MER63 DNA MER1_type 923 1060 0 2362 103 0 13 chrX 125118787 125119097 -51855043 - AluSq SINE Alu -3 310 5 2062 126 18 0 chrX 125119266 125119627 -51854513 - AluSx SINE Alu 0 366 1 1179 59 0 0 chrX 125121296 125121432 -51852708 - AluSq/x SINE Alu -176 136 1 2379 84 3 0 chrX 125121441 125121737 -51852403 - AluY SINE Alu -14 297 1 233 327 0 29 chrX 125122404 125122508 -51851632 + CT-rich Low_complexity Low_complexity 5 105 0 200 0 0 91 chrX 125123430 125123463 -51850677 + (TATTG)n Simple_repeat Simple_repeat 3 32 0 472 175 19 110 chrX 125123555 125123709 -51850431 + L1ME3A LINE L1 5891 6030 -140 201 205 0 0 chrX 125123722 125123761 -51850379 + MIR SINE MIR 77 115 -147 693 253 47 0 chrX 125123786 125123956 -51850184 + MIR SINE MIR 52 229 -33 1469 234 39 30 chrX 125124092 125124524 -51849616 + L1ME3A LINE L1 5728 6163 -7 191 250 54 33 chrX 125125112 125125204 -51848936 - L2 LINE L2 -213 3059 2966 746 258 67 30 chrX 125125804 125126050 -51848090 + MIR SINE MIR 6 260 -2 414 261 69 23 chrX 125126191 125126363 -51847777 - MIR SINE MIR -57 205 29 189 354 73 10 chrX 125127463 125127559 -51846581 - L3b LINE CR1 -5 1578 1477 331 341 7 7 chrX 125128863 125128998 -51845142 + (CCA)n Simple_repeat Simple_repeat 3 137 0 180 111 0 0 chrX 125129650 125129677 -51844463 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 896 164 0 0 chrX 125129695 125129847 -51844293 + L1MA10 LINE L1 6180 6331 -3 697 256 79 41 chrX 125129862 125129913 -51844227 - L1ME4a LINE L1 -204 5917 5869 2081 133 3 7 chrX 125129913 125130213 -51843927 - AluSx SINE Alu -13 299 1 697 256 79 41 chrX 125130213 125130478 -51843662 - L1ME4a LINE L1 -252 5869 5589 269 292 104 0 chrX 125131672 125131768 -51842372 - MIR SINE MIR -11 251 146 249 33 0 0 chrX 125131840 125131870 -51842270 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chrX 125132006 125132026 -51842114 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 2180 100 21 7 chrX 125132026 125132307 -51841833 - AluY SINE Alu -23 288 1 306 0 0 0 chrX 125132486 125132520 -51841620 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1710 140 52 7 chrX 125132520 125132791 -51841349 - AluJo SINE Alu -29 283 1 654 237 59 24 chrX 125132868 125133037 -51841103 - MIR SINE MIR -80 182 8 324 343 134 32 chrX 125133127 125133471 -51840669 + L3 LINE CR1 1084 1462 -115 2295 113 3 0 chrX 125133471 125133781 -51840359 + AluSq SINE Alu 1 311 -2 255 125 0 0 chrX 125133786 125133826 -51840314 + (A)n Simple_repeat Simple_repeat 1 40 0 301 289 0 62 chrX 125134410 125134507 -51839633 + MIR SINE MIR 34 124 -138 2173 89 29 54 chrX 125134759 125135075 -51839065 - AluSx SINE Alu -4 308 1 1833 151 13 27 chrX 125135717 125136015 -51838125 + AluJo SINE Alu 13 306 -6 410 271 20 53 chrX 125136223 125136374 -51837766 + MIR3 SINE MIR 15 160 -48 441 0 0 0 chrX 125136376 125136425 -51837715 + (TG)n Simple_repeat Simple_repeat 2 50 0 951 200 6 17 chrX 125136445 125136625 -51837515 - MER45A DNA AcHobo 0 178 1 386 186 113 10 chrX 125136985 125137082 -51837058 - MIR SINE MIR -69 139 33 212 259 0 0 chrX 125137630 125137693 -51836447 + MIR SINE MIR 101 144 -64 2344 109 0 0 chrX 125137701 125138013 -51836127 - AluSx SINE Alu 0 312 1 584 234 75 48 chrX 125138028 125138255 -51835885 + MIR SINE MIR 18 250 -12 285 75 0 0 chrX 125138261 125138301 -51835839 + (ATG)n Simple_repeat Simple_repeat 3 42 0 267 346 20 20 chrX 125139093 125139194 -51834946 + MIR3 SINE MIR 55 155 -53 218 312 35 4 chrX 125140426 125140537 -51833603 - MIR SINE MIR -62 146 42 382 258 16 31 chrX 125141089 125141217 -51832923 + MER5A DNA MER1_type 16 141 -48 1988 165 0 0 chrX 125141217 125141520 -51832620 - AluJb SINE Alu -9 303 1 1076 135 40 45 chrX 125141520 125141742 -51832398 + THE1C LTR MaLR 155 375 0 1145 168 0 46 chrX 125141742 125141939 -51832201 + AluJb SINE Alu 109 296 -16 1374 97 0 56 chrX 125141941 125142137 -51832003 + AluSq SINE Alu 1 185 -128 1403 282 29 73 chrX 125142360 125142515 -51831625 + L1MC4a LINE L1 5266 5426 -2382 2323 107 10 0 chrX 125142515 125142824 -51831316 + AluSx SINE Alu 1 312 0 1403 282 29 73 chrX 125142824 125143355 -51830785 + L1MC4a LINE L1 5426 5922 -1886 2379 119 0 0 chrX 125143459 125143770 -51830370 - AluSx SINE Alu -1 311 1 2433 95 3 0 chrX 125143774 125144078 -51830062 - AluSp SINE Alu -8 305 1 483 322 88 25 chrX 125144078 125144759 -51829381 - L1P LINE L1 -727 5424 4655 1900 163 0 16 chrX 125144759 125145066 -51829074 - AluJo SINE Alu -10 302 1 483 322 88 25 chrX 125145066 125145355 -51828785 - L1P LINE L1 -1496 4655 4386 187 214 125 18 chrX 125145358 125145414 -51828726 + MER5A DNA MER1_type 128 189 0 410 196 0 69 chrX 125145422 125145524 -51828616 - MER5B DNA MER1_type -77 101 7 339 48 0 0 chrX 125146107 125146149 -51827991 + 5S rRNA rRNA 1 42 -79 1651 163 31 17 chrX 125146615 125146904 -51827236 - AluJo SINE Alu -11 301 9 205 277 0 46 chrX 125147045 125147110 -51827030 + MIR SINE MIR 81 142 -66 506 273 84 0 chrX 125147635 125147789 -51826351 + MIR3 SINE MIR 13 179 -29 576 278 46 6 chrX 125148229 125148402 -51825738 + MIR SINE MIR 42 221 -41 200 308 110 0 chrX 125148644 125148735 -51825405 + L2 LINE L2 3142 3242 -30 204 292 75 25 chrX 125148803 125148923 -51825217 + L2 LINE L2 2856 2981 -291 333 182 30 0 chrX 125149076 125149142 -51824998 + MIR SINE MIR 76 143 -119 264 159 0 0 chrX 125149622 125149666 -51824474 - MIR SINE MIR -114 148 105 209 167 0 0 chrX 125149754 125149790 -51824350 - MIR SINE MIR -110 152 117 189 74 0 0 chrX 125150410 125150437 -51823703 + (CAGCT)n Simple_repeat Simple_repeat 5 31 0 1329 58 0 0 chrX 125150489 125150660 -51823480 + (TTTC)n Simple_repeat Simple_repeat 2 172 0 1990 98 42 0 chrX 125150663 125150928 -51823212 - AluSq SINE Alu -37 276 1 996 108 0 8 chrX 125151219 125151349 -51822791 + AluSx SINE Alu 1 129 -183 240 35 0 0 chrX 125151359 125151388 -51822752 + (TG)n Simple_repeat Simple_repeat 2 30 0 316 266 0 0 chrX 125151388 125151452 -51822688 + L1MC4 LINE L1 6640 6703 -1339 1150 117 11 22 chrX 125151453 125151632 -51822508 + AluSx SINE Alu 133 309 -1 240 245 0 0 chrX 125151638 125151687 -51822453 + MER91 DNA MER1_type 127 175 -15 193 354 49 0 chrX 125151740 125151822 -51822318 - MIR3 SINE MIR -19 189 104 338 293 48 20 chrX 125152215 125152362 -51821778 - MIR3 SINE MIR -15 193 43 486 256 109 75 chrX 125154077 125154370 -51819770 + L1MC5 LINE L1 7608 7910 -51 1048 225 23 16 chrX 125154471 125154729 -51819411 - MIR SINE MIR -1 261 2 186 43 0 0 chrX 125154794 125154817 -51819323 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2036 110 0 0 chrX 125154828 125155091 -51819049 - AluSx SINE Alu -49 263 1 629 263 103 36 chrX 125155649 125155873 -51818267 - MIR SINE MIR -1 261 23 2039 131 17 0 chrX 125156759 125157226 -51816914 - AluSx SINE Alu 0 312 1 936 213 23 32 chrX 125158134 125158355 -51815785 + MIR SINE MIR 18 236 -26 593 211 7 35 chrX 125158525 125158667 -51815473 - MIR SINE MIR -109 153 16 1702 149 3 29 chrX 125159043 125159352 -51814788 - L1MB5 LINE L1 -22 6152 5852 384 214 19 48 chrX 125160498 125160601 -51813539 + MER5A DNA MER1_type 90 189 0 284 212 18 80 chrX 125160502 125160615 -51813525 - MER5A DNA MER1_type -83 106 1 * 370 224 48 48 chrX 125163663 125163788 -51810352 - MIR SINE MIR -50 212 88 776 145 31 57 chrX 125164853 125165046 -51809094 + MER53 DNA DNA 1 188 -1 2287 95 0 0 chrX 125165519 125165832 -51808308 - AluSx SINE Alu 0 313 1 225 203 16 16 chrX 125166026 125166090 -51808050 + G-rich Low_complexity Low_complexity 1 64 0 629 310 6 31 chrX 125166900 125167161 -51806979 - MIR SINE MIR -5 257 2 303 220 0 0 chrX 125167282 125167341 -51806799 - L2 LINE L2 -4 3268 3210 2419 65 7 7 chrX 125167498 125167790 -51806350 - AluSx SINE Alu -16 296 5 2303 104 0 7 chrX 125167809 125168107 -51806033 - AluSx SINE Alu -16 296 1 201 311 123 0 chrX 125168366 125168472 -51805668 + L2 LINE L2 3152 3270 -2 1769 138 163 44 chrX 125168576 125168988 -51805152 + MER31B LTR ERV1 5 465 -1 476 214 0 39 chrX 125169741 125169919 -51804221 + CT-rich Low_complexity Low_complexity 3 173 0 1075 171 0 45 chrX 125170604 125170803 -51803337 - AluSg/x SINE Alu -8 302 113 995 222 8 25 chrX 125171289 125171545 -51802595 + MIR SINE MIR 8 257 -5 290 268 62 36 chrX 125172878 125172990 -51801150 - MIR SINE MIR -72 136 21 423 0 0 0 chrX 125173558 125173605 -51800535 + (TG)n Simple_repeat Simple_repeat 2 48 0 2146 151 76 3 chrX 125173837 125174072 -51800068 - MSTA LTR MaLR 0 428 153 1729 85 0 0 chrX 125174072 125174283 -51799857 - AluSg/x SINE Alu -15 295 85 2146 151 76 3 chrX 125174283 125174430 -51799710 - MSTA LTR MaLR -275 153 18 9135 160 47 3 chrX 125174439 125176015 -51798125 - MSTA-int LTR MaLR -6 1645 1 2235 148 62 7 chrX 125176015 125176421 -51797719 - MSTA LTR MaLR 0 428 1 307 292 104 20 chrX 125176721 125176971 -51797169 + L2 LINE L2 2813 3083 -189 408 355 69 26 chrX 125177004 125177494 -51796646 + L2 LINE L2 582 1092 -2222 780 276 221 6 chrX 125177530 125177860 -51796280 + L2 LINE L2 2913 3313 0 277 389 6 23 chrX 125177892 125178067 -51796073 + L2 LINE L2 1178 1349 -1965 541 300 107 55 chrX 125178076 125179222 -51794918 - L1ME LINE L1 -405 5765 4541 231 322 0 0 chrX 125179317 125179376 -51794764 + L2 LINE L2 1858 1916 -1398 345 233 0 0 chrX 125179406 125179479 -51794661 + MLT1H1 LTR MaLR 58 130 -425 733 189 11 6 chrX 125179480 125179660 -51794480 - L1 LINE L1 -1636 4510 4330 1547 182 31 72 chrX 125179665 125180055 -51794085 - MLT1A2 LTR MaLR 0 374 1 325 193 106 139 chrX 125180057 125180443 -51793697 + MLT1F LTR MaLR 191 590 0 404 311 281 16 chrX 125180452 125180763 -51793377 + L2 LINE L2 1912 2139 -1175 2166 98 28 3 chrX 125180763 125181048 -51793092 + AluSc SINE Alu 1 292 -17 404 311 281 16 chrX 125181048 125181338 -51792802 + L2 LINE L2 2139 2676 -638 870 270 16 24 chrX 125181338 125181590 -51792550 + MIR SINE MIR 1 250 -12 356 143 0 0 chrX 125182352 125182408 -51791732 - MIR SINE MIR -75 133 78 842 253 59 32 chrX 125182415 125182668 -51791472 - MIR SINE MIR 0 262 3 222 37 0 0 chrX 125183188 125183215 -51790925 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 554 281 0 0 chrX 125183216 125183337 -51790803 - L2 LINE L2 -15 3257 3137 268 301 69 92 chrX 125183376 125183755 -51790385 + L2 LINE L2 2556 2925 -389 482 314 17 11 chrX 125183973 125184148 -51789992 - MIR SINE MIR -4 258 83 236 254 0 17 chrX 125185567 125185626 -51788514 + MIR SINE MIR 82 139 -69 470 208 104 8 chrX 125186475 125186600 -51787540 - MIR SINE MIR -78 184 48 1039 204 12 75 chrX 125186732 125186987 -51787153 + MIR SINE MIR 3 241 -21 1392 154 158 16 chrX 125187305 125187558 -51786582 - AluJo SINE Alu -23 289 1 973 226 52 8 chrX 125187678 125187926 -51786214 + MIR SINE MIR 4 262 0 419 273 0 33 chrX 125188433 125188554 -51785586 - L2 LINE L2 -1 3271 3155 231 260 0 0 chrX 125188867 125188917 -51785223 - L2 LINE L2 -13 3259 3210 1042 156 33 0 chrX 125189021 125189201 -51784939 + MER5A DNA MER1_type 2 187 -2 246 248 195 26 chrX 125189419 125189532 -51784608 - MIR3 SINE MIR -54 154 23 354 45 0 0 chrX 125190422 125190466 -51783674 + (TG)n Simple_repeat Simple_repeat 1 44 0 387 335 76 0 chrX 125190724 125190772 -51783368 + MIR SINE MIR 92 135 -127 455 141 13 0 chrX 125190772 125190850 -51783290 - MER116 DNA Mariner 0 80 2 387 335 76 0 chrX 125190850 125190959 -51783181 + MIR SINE MIR 135 261 -1 487 305 52 117 chrX 125191231 125191458 -51782682 - L2 LINE L2 0 3272 3091 4015 99 19 80 chrX 125191458 125192133 -51782007 + MER51A LTR ERV1 1 634 0 487 305 52 117 chrX 125192133 125192384 -51781756 - L2 LINE L2 -181 3091 2825 194 175 100 0 chrX 125192474 125192514 -51781626 - MER5A DNA MER1_type -78 111 68 462 147 20 10 chrX 125192526 125192628 -51781512 + CT-rich Low_complexity Low_complexity 1 103 0 1077 97 6 11 chrX 125192628 125192804 -51781336 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 201 175 0 0 chrX 125192822 125192862 -51781278 + CT-rich Low_complexity Low_complexity 1 40 0 989 150 0 0 chrX 125192862 125193015 -51781125 - FAM SINE Alu -12 173 21 391 149 0 131 chrX 125193037 125193144 -51780996 - L1ME3A LINE L1 -6 6164 6070 256 283 17 2 chrX 125193146 125193213 -51780927 + MER115 DNA AcHobo 1 61 -632 1896 206 36 131 chrX 125193742 125194600 -51779540 - L1ME1 LINE L1 -88 6147 5378 304 253 12 0 chrX 125194597 125194680 -51779460 - L1ME2 LINE L1 -14 6150 6067 * 718 202 40 0 chrX 125194692 125194865 -51779275 - L1ME1 LINE L1 -2906 3309 3130 2609 133 0 39 chrX 125194866 125195097 -51779043 + MER57A LTR ERV1 8 218 -185 1822 158 0 16 chrX 125195097 125195414 -51778726 - AluJb SINE Alu 0 312 1 2609 133 0 39 chrX 125195414 125195594 -51778546 + MER57A LTR ERV1 218 403 0 3321 225 68 25 chrX 125195594 125196050 -51778090 - L1ME1 LINE L1 -3081 3134 2699 1802 149 0 17 chrX 125196050 125196370 -51777770 - AluSx SINE Alu 0 318 4 3321 225 68 25 chrX 125196370 125196913 -51777227 - L1ME1 LINE L1 -3516 2699 2145 1930 144 7 0 chrX 125196913 125197212 -51776928 - AluSq SINE Alu -12 301 1 3321 225 68 25 chrX 125197212 125197241 -51776899 - L1ME1 LINE L1 -4070 2145 2119 2887 166 64 5 chrX 125197219 125197778 -51776362 - L1MD3 LINE L1 0 8064 7473 * 525 220 9 0 chrX 125197782 125197891 -51776249 - MLT1F1 LTR MaLR -446 121 12 3578 260 62 69 chrX 125197894 125198196 -51775944 - L1ME1 LINE L1 -4268 2128 1825 180 0 0 0 chrX 125198196 125198216 -51775924 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1700 130 22 7 chrX 125198219 125198496 -51775644 - AluSx SINE Alu -31 281 1 3578 260 62 69 chrX 125198496 125199099 -51775041 - L1ME1 LINE L1 -4573 1823 1217 1881 166 46 24 chrX 125199099 125199510 -51774630 - L1MB8 LINE L1 0 6178 5759 3578 260 62 69 chrX 125199510 125200706 -51773434 - L1ME1 LINE L1 -5179 1217 37 1150 299 29 82 chrX 125200707 125201357 -51772783 - L2 LINE L2 -564 2750 2135 23 33 0 0 chrX 125202443 125202473 -51771667 + AT_rich Low_complexity Low_complexity 1 30 0 1393 248 66 53 chrX 125202750 125203205 -51770935 - LTR16B LTR ERVL -3 461 1 215 375 0 0 chrX 125203807 125203879 -51770261 + L2 LINE L2 3198 3269 -3 481 217 125 0 chrX 125203913 125204033 -51770107 + L2 LINE L2 3179 3313 0 218 227 107 27 chrX 125204234 125204309 -51769831 - L2 LINE L2 -248 3065 2985 360 292 53 0 chrX 125205515 125205628 -51768512 - MIR SINE MIR -27 235 117 1806 138 30 23 chrX 125205630 125205935 -51768205 + AluSx SINE Alu 1 307 -5 294 95 0 0 chrX 125205960 125206002 -51768138 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 192 286 143 24 chrX 125206002 125206086 -51768054 - MIR SINE MIR -132 130 37 266 233 117 48 chrX 125208006 125208109 -51766031 - L2 LINE L2 -8 3264 3155 1553 182 120 9 chrX 125208229 125208553 -51765587 + MLT1A1 LTR MaLR 6 365 0 283 246 31 0 chrX 125208730 125208795 -51765345 + L2 LINE L2 3205 3271 -1 1683 156 0 3 chrX 125208896 125209178 -51764962 + AluSx SINE Alu 1 281 -31 248 77 26 0 chrX 125209180 125209219 -51764921 + (GA)n Simple_repeat Simple_repeat 2 41 0 355 194 68 48 chrX 125209219 125209322 -51764818 - MIR3 SINE MIR -93 115 11 193 313 0 0 chrX 125209710 125209758 -51764382 - L2 LINE L2 -88 3184 3137 614 254 38 32 chrX 125210297 125210482 -51763658 + MIR SINE MIR 25 210 -52 216 316 51 13 chrX 125210652 125210731 -51763409 + L3 LINE CR1 430 511 -1066 848 276 137 7 chrX 125210988 125211281 -51762859 + LTR16C LTR ERVL 161 491 0 351 223 269 8 chrX 125211430 125211560 -51762580 + MER5A DNA MER1_type 26 189 0 1480 174 104 95 chrX 125211619 125212008 -51762132 + MLT1C LTR MaLR 1 396 -71 493 118 0 0 chrX 125212008 125212084 -51762056 - L1PA8 LINE L1 0 6172 6097 1480 174 104 95 chrX 125212084 125212155 -51761985 + MLT1C LTR MaLR 396 465 -2 990 346 29 29 chrX 125212259 125212837 -51761303 + L3 LINE CR1 590 1167 -410 518 262 91 118 chrX 125212858 125213198 -51760942 - L2 LINE L2 -18 3254 2924 321 315 0 0 chrX 125213230 125213338 -51760802 - L2 LINE L2 -583 2731 2624 1908 177 21 129 chrX 125213352 125213419 -51760721 - MLT1D LTR MaLR 0 505 432 1215 154 106 75 chrX 125213419 125213546 -51760594 + AluJo SINE Alu 1 123 -189 1910 132 0 3 chrX 125213546 125213835 -51760305 - AluSx SINE Alu -20 292 5 1215 154 106 75 chrX 125213835 125213999 -51760141 + AluJo SINE Alu 123 301 -11 1908 177 21 129 chrX 125213999 125214367 -51759773 - MLT1D LTR MaLR -73 432 142 1941 141 0 3 chrX 125214367 125214664 -51759476 - AluSx SINE Alu -16 296 1 1908 177 21 129 chrX 125214664 125214793 -51759347 - MLT1D LTR MaLR -363 142 1 596 265 48 16 chrX 125214801 125214990 -51759150 - MIR SINE MIR -56 206 12 229 256 11 56 chrX 125215066 125215156 -51758984 + L3 LINE CR1 1240 1325 -252 507 233 147 0 chrX 125215178 125215294 -51758846 - MIR3 SINE MIR -6 202 70 2034 116 0 0 chrX 125215330 125215622 -51758518 - AluSx SINE Alu 0 312 21 266 319 44 11 chrX 125215623 125215714 -51758426 + L3 LINE CR1 1369 1462 -115 463 170 23 96 chrX 125215857 125216030 -51758110 - L1ME1 LINE L1 -2 6332 6024 * 1173 217 110 53 chrX 125216025 125216399 -51757741 - L1MD2 LINE L1 -3 6356 5962 2213 97 3 3 chrX 125216704 125217014 -51757126 - AluSx SINE Alu -2 310 1 509 141 0 0 chrX 125217056 125217141 -51756999 + L1MA7 LINE L1 6145 6229 -62 1889 156 19 3 chrX 125217147 125217454 -51756686 + MER2 DNA MER2_type 34 345 0 369 92 15 0 chrX 125217454 125217519 -51756621 + L1MA7 LINE L1 6226 6291 0 522 256 8 8 chrX 125217578 125217707 -51756433 - L1MD2 LINE L1 -2001 5807 5679 251 267 0 0 chrX 125218190 125218250 -51755890 - MIR SINE MIR -79 129 70 1983 127 3 7 chrX 125218597 125218896 -51755244 - AluSx SINE Alu -14 298 1 250 345 0 45 chrX 125218961 125219071 -51755069 - MIR SINE MIR -73 135 31 1225 227 140 99 chrX 125219593 125220149 -51753991 + MLT1G LTR MaLR 1 579 -16 2070 75 43 0 chrX 125220343 125220625 -51753515 + AluY SINE Alu 18 311 0 810 88 5 182 chrX 125220659 125220851 -51753289 + AluSg/x SINE Alu 137 294 -18 950 155 76 91 chrX 125221967 125222231 -51751909 - MIR SINE MIR -1 261 2 996 215 15 48 chrX 125222337 125222576 -51751564 - MIR SINE MIR -2 260 37 297 110 24 146 chrX 125222594 125222676 -51751464 - L2 LINE L2 0 3272 3201 699 279 37 0 chrX 125222686 125222876 -51751264 + L2 LINE L2 2230 2426 -888 1856 170 67 20 chrX 125222876 125223218 -51750922 + MLT1A1 LTR MaLR 1 358 -7 943 278 265 9 chrX 125223219 125223765 -51750375 + L2 LINE L2 2422 2827 -486 876 222 191 12 chrX 125223765 125223880 -51750260 + AluYa8 SINE Alu 4 97 -203 441 0 0 0 chrX 125223880 125223929 -51750211 + (CA)n Simple_repeat Simple_repeat 2 50 0 876 222 191 12 chrX 125223929 125224065 -51750075 + AluYa8 SINE Alu 97 300 0 943 278 265 9 chrX 125224065 125224214 -51749926 + L2 LINE L2 2827 3295 -18 444 266 129 0 chrX 125224402 125224526 -51749614 + MIR SINE MIR 46 185 -77 * 1678 249 32 28 chrX 125224524 125225108 -51749032 + L2 LINE L2 2728 3313 0 263 281 0 0 chrX 125225198 125225262 -51748878 + L2 LINE L2 3203 3266 -6 2180 171 11 3 chrX 125225432 125225794 -51748346 + MLT1A1 LTR MaLR 1 365 0 2116 199 35 4 chrX 125225865 125226196 -51747944 + Charlie4a DNA MER1_type 19 369 -1592 1052 163 0 0 chrX 125226196 125226356 -51747784 + FRAM SINE Alu 2 161 -5 2116 199 35 4 chrX 125226356 125226487 -51747653 + Charlie4a DNA MER1_type 369 495 -13 509 287 78 66 chrX 125227305 125227727 -51746413 - L2 LINE L2 -2277 1037 611 1149 270 128 13 chrX 125227898 125228455 -51745685 + L2 LINE L2 2220 3313 0 587 198 10 132 chrX 125228616 125228698 -51745442 + MER5B DNA MER1_type 1 47 -131 1783 119 24 17 chrX 125228698 125228991 -51745149 + AluJo SINE Alu 4 298 -14 587 198 10 132 chrX 125228991 125229105 -51745035 + MER5B DNA MER1_type 47 173 -5 472 167 244 58 chrX 125229119 125229275 -51744865 + MER5A DNA MER1_type 4 188 -1 396 0 0 0 chrX 125230664 125230708 -51743432 + (CA)n Simple_repeat Simple_repeat 2 45 0 226 274 9 38 chrX 125230854 125230960 -51743180 + CT-rich Low_complexity Low_complexity 1 103 0 1359 209 72 27 chrX 125230997 125231370 -51742770 - MLT1B LTR MaLR 0 390 1 385 325 74 64 chrX 125231398 125232062 -51742078 - L2 LINE L2 -107 3165 2292 1113 226 68 27 chrX 125232081 125232209 -51741931 + L1ME1 LINE L1 444 565 -5831 1473 188 15 98 chrX 125232209 125232607 -51741533 + MLT1A1 LTR MaLR 1 365 0 1113 226 68 27 chrX 125232607 125232774 -51741366 + L1ME1 LINE L1 565 751 -5645 922 186 140 5 chrX 125232774 125232967 -51741173 - MER20 DNA MER1_type 0 219 1 6754 226 50 29 chrX 125232968 125233208 -51740932 + L1ME1 LINE L1 746 980 -5235 1865 84 91 4 chrX 125233208 125233482 -51740658 - AluYa5 SINE Alu -13 298 1 6754 226 50 29 chrX 125233482 125235543 -51738597 + L1ME1 LINE L1 980 2996 -3219 3350 127 50 0 chrX 125235543 125235582 -51738558 - MLT2B1 LTR ERVL 0 520 484 909 83 0 0 chrX 125235582 125235714 -51738426 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 3350 127 50 0 chrX 125235714 125236169 -51737971 - MLT2B1 LTR ERVL -36 484 1 6754 226 50 29 chrX 125236169 125236197 -51737943 + L1ME1 LINE L1 2996 3022 -3193 7544 39 1 2 chrX 125236197 125237697 -51736443 + L1PA5 LINE L1 4656 6154 0 6754 226 50 29 chrX 125237697 125239019 -51735121 + L1ME1 LINE L1 3022 4460 -1755 4957 153 49 8 chrX 125239015 125240272 -51733868 + L1MB7 LINE L1 4946 6244 -9 * 963 171 15 0 chrX 125240274 125240473 -51733667 + L1ME1 LINE L1 5352 5553 -682 1346 153 46 0 chrX 125240477 125240739 -51733401 + L1MB3 LINE L1 5909 6182 -1 248 88 53 35 chrX 125240756 125240813 -51733327 + L1MB4 LINE L1 6123 6180 0 1890 186 37 52 chrX 125240820 125241303 -51732837 + L1ME1 LINE L1 5543 6018 -217 437 210 62 82 chrX 125241380 125241599 -51732541 + L1MA10 LINE L1 5967 6334 0 203 214 54 54 chrX 125241601 125241657 -51732483 + MIR3 SINE MIR 143 198 -10 593 283 61 91 chrX 125242969 125243566 -51730574 - L2 LINE L2 0 3272 2638 990 256 91 50 chrX 125243683 125243874 -51730266 + MLT1D LTR MaLR 1 183 -322 1543 160 19 30 chrX 125243874 125244137 -51730003 + AluJo SINE Alu 18 277 -35 990 256 91 50 chrX 125244137 125244302 -51729838 + MLT1D LTR MaLR 183 340 -165 731 154 0 0 chrX 125244302 125244432 -51729708 - L1MA7 LINE L1 -1 6290 6161 990 256 91 50 chrX 125244432 125244559 -51729581 + MLT1D LTR MaLR 340 505 0 623 254 14 14 chrX 125246526 125246664 -51727476 + MIR SINE MIR 16 153 -55 304 247 74 12 chrX 125246937 125247018 -51727122 - L2 LINE L2 -1 3271 3186 653 277 113 30 chrX 125247067 125247298 -51726842 - MIR SINE MIR -3 259 10 1038 83 0 0 chrX 125247388 125247520 -51726620 - AluY SINE Alu -14 297 166 1675 128 61 37 chrX 125247568 125247895 -51726245 + THE1C LTR MaLR 1 335 -40 770 88 9 0 chrX 125247893 125248006 -51726134 - MSTA LTR MaLR -314 114 1 * 848 259 0 36 chrX 125248100 125248162 -51725978 - MIR SINE MIR -31 231 168 1411 181 7 138 chrX 125248162 125248535 -51725605 - MLT1A1 LTR MaLR 0 365 51 2357 99 0 3 chrX 125248535 125248839 -51725301 + AluSp SINE Alu 1 303 -10 1411 181 7 138 chrX 125248839 125248885 -51725255 - MLT1A1 LTR MaLR -314 51 1 848 259 0 36 chrX 125248885 125249042 -51725098 - MIR SINE MIR -94 168 20 3493 133 8 0 chrX 125249420 125249940 -51724200 - MER1A DNA MER1_type 0 529 6 296 257 57 14 chrX 125250024 125250094 -51724046 - L2 LINE L2 -6 3307 3235 1940 152 0 36 chrX 125250445 125250748 -51723392 + AluJo SINE Alu 1 292 -20 750 173 220 0 chrX 125250960 125251128 -51723012 + MER3 DNA MER1_type 3 207 -2 198 254 196 61 chrX 125251328 125251488 -51722652 - MIR SINE MIR -65 197 22 2438 88 7 0 chrX 125251491 125251836 -51722304 + AluSx SINE Alu 3 349 0 538 199 43 43 chrX 125252057 125252198 -51721942 - L2 LINE L2 0 3313 3173 269 315 77 39 chrX 125252370 125252500 -51721640 - L2 LINE L2 0 3272 3138 27 29 0 0 chrX 125253775 125253809 -51720331 + GC_rich Low_complexity Low_complexity 1 34 0 200 176 0 0 chrX 125254481 125254515 -51719625 + (CCGGG)n Simple_repeat Simple_repeat 1 34 0 200 208 19 0 chrX 125257963 125258016 -51716124 + (TG)n Simple_repeat Simple_repeat 1 54 0 293 297 35 21 chrX 125259092 125259237 -51714903 + L1MC5 LINE L1 7720 7866 -95 296 247 11 54 chrX 125259951 125260044 -51714096 - MIR3 SINE MIR -11 197 109 457 281 140 24 chrX 125261327 125261491 -51712649 - MIR3 SINE MIR -7 201 19 273 150 0 50 chrX 125261893 125261973 -51712167 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 258 81 0 0 chrX 125262213 125262250 -51711890 + (CTG)n Simple_repeat Simple_repeat 2 38 0 2421 96 0 0 chrX 125263588 125263889 -51710251 + AluSx SINE Alu 1 301 -11 1775 126 0 120 chrX 125264251 125264592 -51709548 - AluSx SINE Alu -1 301 2 345 206 55 0 chrX 125265718 125265791 -51708349 - MER58A DNA MER1_type -5 219 143 383 182 39 0 chrX 125265880 125265957 -51708183 - MER58A DNA MER1_type 0 121 42 575 311 58 16 chrX 125266114 125266366 -51707774 + MIR SINE MIR 1 262 0 399 297 42 36 chrX 125266362 125266527 -51707613 - MIR SINE MIR -64 198 33 * 921 187 82 42 chrX 125266541 125266880 -51707260 + MSTC LTR MaLR 1 388 -34 277 254 17 85 chrX 125267172 125267290 -51706850 + MIR SINE MIR 27 136 -72 359 298 9 28 chrX 125267633 125267759 -51706381 + MIR SINE MIR 7 137 -71 480 237 15 37 chrX 125267799 125267934 -51706206 - MIR3 SINE MIR -4 204 73 444 300 174 16 chrX 125267945 125268135 -51706005 - MIR SINE MIR -12 250 31 1964 105 59 39 chrX 125268846 125269152 -51704988 + AluSx SINE Alu 1 312 0 266 293 28 5 chrX 125269809 125269935 -51704205 + MIR SINE MIR 90 220 -42 199 157 0 118 chrX 125270048 125270099 -51704041 - L2 LINE L2 0 3313 3269 322 250 121 36 chrX 125270226 125270366 -51703774 - L2 LINE L2 -207 3065 2914 215 206 77 32 chrX 125270352 125270434 -51703706 - MIR SINE MIR -25 183 95 * 1152 223 36 4 chrX 125272587 125272834 -51701306 - MIR SINE MIR 0 262 8 409 280 0 0 chrX 125272873 125272966 -51701174 - L3 LINE CR1 -110 1467 1375 213 39 0 0 chrX 125273291 125273317 -51700823 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2236 90 0 62 chrX 125274212 125274533 -51699607 - AluSx SINE Alu -11 301 1 358 275 0 84 chrX 125274687 125274829 -51699311 - MIR3 SINE MIR -49 159 30 194 244 24 0 chrX 125274988 125275029 -51699111 - L2 LINE L2 -17 3255 3214 1748 110 144 0 chrX 125275074 125275338 -51698802 - AluSx SINE Alu 0 302 1 1025 154 60 200 chrX 125276060 125276495 -51697645 - MLT1A2 LTR MaLR 0 374 1 274 303 22 22 chrX 125276616 125276705 -51697435 + MIR3 SINE MIR 12 100 -108 449 281 132 6 chrX 125276706 125276873 -51697267 + L2 LINE L2 3079 3266 -6 850 274 93 0 chrX 125277220 125277407 -51696733 + MIR SINE MIR 2 215 -47 441 0 0 0 chrX 125277407 125277456 -51696684 + (TG)n Simple_repeat Simple_repeat 2 50 0 850 274 93 0 chrX 125277456 125277494 -51696646 + MIR SINE MIR 215 248 -14 347 267 50 8 chrX 125277912 125278032 -51696108 + MIR3 SINE MIR 60 184 -24 425 299 35 20 chrX 125278849 125279015 -51695125 + MIR SINE MIR 32 192 -62 1235 214 13 13 chrX 125279022 125279260 -51694880 + MER8 DNA MER2_type 2 239 0 1765 244 68 30 chrX 125279643 125280175 -51693965 + MLT1E LTR MaLR 14 565 -28 2135 137 16 0 chrX 125280201 125280507 -51693633 - AluSx SINE Alu -1 311 1 357 273 82 16 chrX 125280765 125280959 -51693181 + L1ME3 LINE L1 5734 5940 -222 2301 104 7 0 chrX 125281026 125281333 -51692807 + AluSc SINE Alu 1 309 0 636 247 68 21 chrX 125281353 125281543 -51692597 + L2 LINE L2 2255 2453 -861 5660 166 7 19 chrX 125281556 125283065 -51691075 - L1PA16 LINE L1 -23 6143 4617 2568 113 11 8 chrX 125283065 125283428 -51690712 + THE1B LTR MaLR 1 364 0 5660 166 7 19 chrX 125283428 125283893 -51690247 - L1PA16 LINE L1 -1549 4617 4194 2343 84 0 7 chrX 125283893 125284191 -51689949 - AluY SINE Alu -15 296 1 5660 166 7 19 chrX 125284191 125284238 -51689902 - L1PA16 LINE L1 -1972 4194 4148 1846 251 58 24 chrX 125284238 125284856 -51689284 + L2 LINE L2 2440 3074 -239 1861 160 17 3 chrX 125285804 125286104 -51688036 - AluJo SINE Alu -3 309 6 1027 173 9 31 chrX 125287029 125287255 -51686885 + MER33 DNA MER1_type 5 225 -99 624 280 0 6 chrX 125287258 125287433 -51686707 + L1MA10 LINE L1 6159 6332 -2 408 62 88 38 chrX 125287482 125287562 -51686578 + MER33 DNA MER1_type 241 324 0 292 232 146 0 chrX 125287579 125287661 -51686479 - MIR SINE MIR -65 143 50 336 207 0 0 chrX 125288362 125288420 -51685720 - MIR SINE MIR -20 242 185 265 217 33 0 chrX 125289567 125289627 -51684513 - L2 LINE L2 -219 3053 2992 1004 262 52 0 chrX 125289652 125289881 -51684259 - MIR SINE MIR -20 242 2 1884 137 4 0 chrX 125290058 125290374 -51683766 + AluSx SINE Alu 6 322 0 1712 78 0 0 chrX 125292094 125292313 -51681827 + AluSx SINE Alu 1 219 -93 739 123 0 0 chrX 125292313 125292427 -51681713 + AluSg/x SINE Alu 188 301 -11 262 207 103 0 chrX 125292784 125292842 -51681298 + L2 LINE L2 3188 3251 -21 799 293 35 23 chrX 125292861 125293120 -51681020 - MIR SINE MIR 0 262 1 995 263 22 19 chrX 125293763 125294075 -51680065 + L2 LINE L2 2997 3309 -4 833 173 7 0 chrX 125294305 125294444 -51679696 - L1PA16 LINE L1 -2 6164 6025 1130 187 0 8 chrX 125294644 125294856 -51679284 + MIR SINE MIR 56 262 0 248 260 106 81 chrX 125295009 125295132 -51679008 + L2 LINE L2 3168 3293 -20 2164 112 0 0 chrX 125295194 125295488 -51678652 - AluSx SINE Alu -18 294 1 186 175 0 100 chrX 125295564 125295604 -51678536 - L2 LINE L2 -91 3181 3146 635 286 111 1 chrX 125295739 125296016 -51678124 - L2 LINE L2 -227 3086 2783 2391 75 0 0 chrX 125296482 125296789 -51677351 + AluY SINE Alu 1 307 -4 216 167 42 42 chrX 125297136 125297184 -51676956 + L2 LINE L2 3254 3301 -12 380 263 32 11 chrX 125297187 125297282 -51676858 + MLT1J1 LTR MaLR 66 162 -284 1407 215 71 14 chrX 125297305 125297658 -51676482 + MLT1A2 LTR MaLR 1 373 -1 442 269 8 8 chrX 125297737 125297856 -51676284 + MLT1I LTR MaLR 291 409 0 646 247 130 17 chrX 125298667 125298898 -51675242 - MIR SINE MIR -4 258 2 478 246 65 7 chrX 125299038 125299176 -51674964 - MIR SINE MIR -49 213 68 325 211 0 0 chrX 125300304 125300375 -51673765 - MER96 DNA MER1_type? 0 175 105 1285 71 12 0 chrX 125300599 125300768 -51673372 + AluSg/x SINE Alu 132 302 -10 410 255 122 36 chrX 125300823 125301044 -51673096 + MIR SINE MIR 21 211 -51 693 24 0 0 chrX 125301388 125301471 -51672669 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 363 318 70 25 chrX 125301471 125301672 -51672468 - L2 LINE L2 -23 3290 3081 496 305 63 18 chrX 125301866 125301993 -51672147 - L2 LINE L2 -553 2761 2641 731 149 45 109 chrX 125301993 125302194 -51671946 + MER53 DNA DNA 1 188 -1 496 305 63 18 chrX 125302194 125302351 -51671789 - L2 LINE L2 -673 2641 2464 2032 96 0 7 chrX 125302904 125303210 -51670930 - AluSc SINE Alu 0 304 1 1294 49 6 6 chrX 125304117 125304281 -51669859 - AluSx SINE Alu -137 175 12 958 135 21 16 chrX 125304284 125304460 -51669680 - MER61A LTR ERV1 -144 357 3 1153 87 174 63 chrX 125304517 125304724 -51669416 + MER30 DNA MER1_type 1 230 0 902 174 14 0 chrX 125304732 125304876 -51669264 - MER58B DNA MER1_type 0 341 196 2416 73 0 0 chrX 125304876 125305178 -51668962 + AluSg SINE Alu 1 302 -8 921 291 102 27 chrX 125305305 125305684 -51668456 - L2 LINE L2 -1133 2181 1761 2279 83 3 3 chrX 125305684 125305986 -51668154 + AluSq SINE Alu 12 313 0 921 291 102 27 chrX 125305986 125306057 -51668083 - L2 LINE L2 -1553 1761 1697 2862 133 31 11 chrX 125306150 125306608 -51667532 - MLT1C LTR MaLR 0 467 1 313 136 23 45 chrX 125307514 125307602 -51666538 - L1ME4a LINE L1 -1 6120 6035 387 275 53 48 chrX 125307804 125308011 -51666129 - L1ME4a LINE L1 -89 6032 5825 403 273 117 26 chrX 125308144 125308298 -51665842 - L1ME4a LINE L1 -464 5657 5490 333 348 20 89 chrX 125308317 125308610 -51665530 - L2 LINE L2 -33 3239 2967 287 143 0 0 chrX 125308653 125308695 -51665445 + 5S rRNA rRNA 1 42 -79 183 326 107 22 chrX 125308793 125308849 -51665291 + L3 LINE CR1 810 860 -717 3374 126 43 7 chrX 125308849 125308877 -51665263 - L1MB2 LINE L1 -5 6166 6140 2193 86 30 0 chrX 125308877 125309178 -51664962 + AluSg SINE Alu 1 310 0 3374 126 43 7 chrX 125309178 125309712 -51664428 - L1MB2 LINE L1 -31 6140 5584 183 326 107 22 chrX 125309712 125309833 -51664307 + L3 LINE CR1 860 1002 -575 265 286 149 68 chrX 125309955 125310364 -51663776 - L2 LINE L2 -1 3271 2830 261 237 9 18 chrX 125310677 125310791 -51663349 + CT-rich Low_complexity Low_complexity 3 115 0 2142 96 0 26 chrX 125310803 125311116 -51663024 + AluSx SINE Alu 1 305 -7 234 254 17 17 chrX 125311166 125311225 -51662915 + L2 LINE L2 3206 3264 -8 368 273 168 36 chrX 125311463 125311580 -51662560 + MIR SINE MIR 14 114 -148 2277 84 0 0 chrX 125311580 125311877 -51662263 + AluSg SINE Alu 1 297 -13 368 273 168 36 chrX 125311877 125311979 -51662161 + MIR SINE MIR 114 262 0 736 278 85 95 chrX 125312005 125312608 -51661532 + L2 LINE L2 2705 3311 -2 427 248 72 8 chrX 125312907 125313032 -51661108 - MIR SINE MIR -5 257 125 285 143 36 0 chrX 125313032 125313088 -51661052 + L1MA9 LINE L1 6255 6312 0 580 206 8 24 chrX 125313090 125313216 -51660924 - MIR SINE MIR -128 134 11 1388 284 108 48 chrX 125313427 125313575 -51660565 - L2 LINE L2 -337 2977 2839 561 224 98 23 chrX 125313575 125313749 -51660391 + MER5A DNA MER1_type 3 189 0 1388 284 108 48 chrX 125313749 125313901 -51660239 - L2 LINE L2 -475 2839 2698 1453 171 29 38 chrX 125313901 125314216 -51659924 + AluJb SINE Alu 1 312 0 1388 284 108 48 chrX 125314216 125314690 -51659450 - L2 LINE L2 -616 2698 2155 350 278 130 0 chrX 125314726 125314841 -51659299 + MIR3 SINE MIR 69 198 -10 873 128 0 0 chrX 125320572 125320697 -51653443 - AluJb SINE Alu -187 125 1 225 314 59 42 chrX 125321059 125321177 -51652963 + MIR SINE MIR 20 139 -69 300 238 28 175 chrX 125323492 125323635 -51650505 + MIR SINE MIR 82 204 -4 331 309 6 49 chrX 125323670 125323832 -51650308 - L3b LINE CR1 -201 1382 1228 805 237 85 34 chrX 125324834 125325070 -51649070 - MIR SINE MIR -7 255 8 486 301 12 31 chrX 125325187 125325350 -51648790 + MIR SINE MIR 1 160 -102 246 398 33 16 chrX 125326346 125326590 -51647550 - L2 LINE L2 -431 2883 2636 267 31 0 0 chrX 125326590 125326622 -51647518 + (GA)n Simple_repeat Simple_repeat 1 32 0 243 0 0 0 chrX 125326697 125326724 -51647416 + (CA)n Simple_repeat Simple_repeat 2 28 0 253 215 38 0 chrX 125326726 125326805 -51647335 + (TA)n Simple_repeat Simple_repeat 1 82 0 2097 111 3 0 chrX 125327285 125327583 -51646557 + AluSx SINE Alu 1 299 -13 1393 147 30 9 chrX 125329241 125329472 -51644668 + MER46A DNA MER2_type 1 236 0 659 278 196 2 chrX 125330061 125330475 -51643665 + L1MC4 LINE L1 7549 8042 0 359 316 90 13 chrX 125331194 125331349 -51642791 - MER5A DNA MER1_type -1 188 22 443 229 85 32 chrX 125331402 125331543 -51642597 + MIR SINE MIR 1 146 -62 805 229 129 0 chrX 125332910 125333120 -51641020 - MIR SINE MIR -20 242 6 5012 72 7 12 chrX 125334249 125334590 -51639550 + L1PA8 LINE L1 5491 5829 -343 1950 126 0 17 chrX 125334590 125334891 -51639249 + AluSx SINE Alu 1 296 -16 5012 72 7 12 chrX 125334891 125335226 -51638914 + L1PA8 LINE L1 5829 6164 -8 191 367 107 33 chrX 125335425 125335575 -51638565 - MIR SINE MIR -50 212 52 366 284 92 28 chrX 125335612 125335753 -51638387 + MER5B DNA MER1_type 29 178 0 266 279 8 66 chrX 125336111 125336233 -51637907 + L1MC4a LINE L1 5809 5923 -1885 886 172 161 0 chrX 125336302 125336349 -51637791 - MER3 DNA MER1_type 0 209 171 186 71 0 0 chrX 125336349 125336377 -51637763 + (TTAAA)n Simple_repeat Simple_repeat 1 28 0 886 172 161 0 chrX 125336377 125336509 -51637631 - MER3 DNA MER1_type -38 171 1 1995 71 119 0 chrX 125336818 125337086 -51637054 + AluY SINE Alu 1 300 -1 655 295 67 9 chrX 125337343 125337477 -51636663 + MIR SINE MIR 12 164 -98 988 192 154 5 chrX 125337477 125337685 -51636455 + MER8 DNA MER2_type 1 239 0 655 295 67 9 chrX 125337685 125337760 -51636380 + MIR SINE MIR 164 233 -29 22 35 0 0 chrX 125337789 125337818 -51636322 + AT_rich Low_complexity Low_complexity 1 29 0 706 261 72 0 chrX 125338018 125338213 -51635927 - MIR SINE MIR -49 213 5 1167 110 6 6 chrX 125338434 125338616 -51635524 + AluSg/x SINE Alu 129 312 0 532 299 39 0 chrX 125339329 125339456 -51634684 + L2 LINE L2 3141 3272 0 265 100 40 0 chrX 125340099 125340149 -51633991 + A-rich Low_complexity Low_complexity 3 54 0 2795 10 0 10 chrX 125340234 125340547 -51633593 + AluYb8 SINE Alu 1 310 -8 303 243 14 14 chrX 125340597 125340667 -51633473 + MER5B DNA MER1_type 109 178 0 7595 20 20 2 chrX 125343571 125344714 -51629426 - L1PA3 LINE L1 -3 6152 5000 1054 203 105 10 chrX 125344958 125345253 -51628887 - MER33 DNA MER1_type -1 323 1 1654 194 13 3 chrX 125348951 125349250 -51624890 + AluJb SINE Alu 1 302 -10 809 263 34 38 chrX 125350044 125350306 -51623834 - MIR SINE MIR 0 262 2 1000 233 26 4 chrX 125451950 125452182 -51521958 - MIR SINE MIR -24 238 2 319 277 77 23 chrX 125452238 125452368 -51521772 - MIR SINE MIR -55 207 71 239 204 0 0 chrX 125452491 125452535 -51521605 - L1MC4 LINE L1 -1340 6702 6659 717 151 0 0 chrX 125452540 125452643 -51521497 - LTR29 LTR ERV1 -62 560 458 2291 173 65 143 chrX 125452643 125453422 -51520718 - LTR8A LTR ERV1 0 727 9 2257 125 99 10 chrX 125453430 125453815 -51520325 - LTR29 LTR ERV1 -161 461 43 372 200 0 0 chrX 125453826 125453921 -51520219 + (TA)n Simple_repeat Simple_repeat 2 96 0 189 0 0 0 chrX 125453921 125453942 -51520198 + (CA)n Simple_repeat Simple_repeat 2 22 0 180 295 179 11 chrX 125454758 125454853 -51519287 + MIR SINE MIR 29 139 -69 191 263 42 53 chrX 125455116 125455211 -51518929 - L2 LINE L2 -501 2813 2720 1552 102 19 0 chrX 125455272 125455487 -51518653 + LTR49 LTR ERV1 26 244 -351 4268 24 0 0 chrX 125455487 125455979 -51518161 - L1PA3 LINE L1 -899 5247 4756 8309 19 0 0 chrX 125455979 125456880 -51517260 + L1PA3 LINE L1 5254 6155 0 903 127 39 16 chrX 125456880 125457114 -51517026 + LTR49 LTR ERV1 229 541 -81 3696 224 54 27 chrX 125457115 125458531 -51515609 + L1 LINE L1 1 1446 -5343 * 8057 170 15 48 chrX 125458529 125458946 -51515194 + L1 LINE L1 3341 3770 -3018 2513 68 3 0 chrX 125458946 125459256 -51514884 + AluY SINE Alu 1 311 0 8057 170 15 48 chrX 125459256 125460601 -51513539 + L1 LINE L1 3770 5044 -1744 2950 110 63 4 chrX 125460600 125461062 -51513078 + L1MA5A LINE L1 5695 6183 -114 * 213 239 68 45 chrX 125461614 125461702 -51512438 - L2 LINE L2 -8 3264 3175 258 240 0 0 chrX 125461793 125461843 -51512297 + L2 LINE L2 3242 3291 -22 323 218 8 19 chrX 125462682 125462819 -51511321 - MIR SINE MIR 0 262 71 271 374 8 8 chrX 125463229 125463360 -51510780 + L2 LINE L2 3175 3305 -8 421 306 5 99 chrX 125465740 125465962 -51508178 + L2 LINE L2 3071 3271 -1 242 370 39 96 chrX 125466444 125466725 -51507415 + L2 LINE L2 2924 3188 -84 359 258 50 8 chrX 125466922 125467042 -51507098 - MIR SINE MIR -90 172 48 216 0 0 0 chrX 125467047 125467071 -51507069 + (T)n Simple_repeat Simple_repeat 1 24 0 2783 222 69 16 chrX 125467340 125468025 -51506115 - L1ME2 LINE L1 -10 6154 5434 301 170 220 20 chrX 125468227 125468327 -51505813 - L2 LINE L2 -1 3312 3193 1315 167 0 14 chrX 125468343 125468553 -51505587 - AluJb SINE Alu -28 284 78 275 221 81 60 chrX 125468556 125468705 -51505435 - L2 LINE L2 -113 3200 3049 383 255 11 0 chrX 125472102 125472196 -51501944 + MIR SINE MIR 32 126 -82 24 0 0 0 chrX 125472275 125472299 -51501841 + AT_rich Low_complexity Low_complexity 1 24 0 801 226 53 34 chrX 125472840 125472983 -51501157 - MER58C DNA MER1_type -2208 212 62 1981 146 0 7 chrX 125472983 125473284 -51500856 + AluJo SINE Alu 1 299 -13 801 226 53 34 chrX 125473284 125473348 -51500792 - MER58C DNA MER1_type -2358 62 1 266 273 0 15 chrX 125473556 125473622 -51500518 - MIR SINE MIR -196 66 2 1603 282 121 27 chrX 125473944 125475000 -51499140 + L1MC4 LINE L1 4800 5348 -798 1017 231 103 8 chrX 125475010 125475244 -51498896 + MIR SINE MIR 2 257 -5 188 317 42 33 chrX 125475718 125475838 -51498302 + L2 LINE L2 2394 2514 -800 217 182 26 117 chrX 125475890 125475967 -51498173 - MER5A DNA MER1_type 0 189 120 2092 195 30 88 chrX 125475973 125476542 -51497598 + MLT1F LTR MaLR 1 536 -6 1242 70 0 6 chrX 125476547 125476703 -51497437 - MER1B DNA MER1_type 0 329 175 1462 149 14 0 chrX 125476744 125476959 -51497181 - MER1B DNA MER1_type -63 234 17 374 171 0 110 chrX 125476960 125477042 -51497098 - MER5A DNA MER1_type -91 98 26 905 304 0 8 chrX 125478198 125478458 -51495682 - MIR SINE MIR 0 262 5 317 311 0 0 chrX 125478682 125478772 -51495368 + L1MC4 LINE L1 6614 6703 -1339 2142 88 3 40 chrX 125478773 125479069 -51495071 - AluSc SINE Alu -24 285 1 297 0 0 0 chrX 125479604 125479637 -51494503 + (TG)n Simple_repeat Simple_repeat 1 33 0 450 273 43 56 chrX 125480678 125480816 -51493324 + MIR3 SINE MIR 5 142 -66 434 155 12 60 chrX 125480816 125480900 -51493240 - MER116 DNA Mariner 0 80 1 450 273 43 56 chrX 125480900 125480922 -51493218 + MIR3 SINE MIR 142 163 -45 1352 62 0 11 chrX 125483127 125483304 -51490836 + MER30 DNA MER1_type 1 175 -55 1858 136 4 14 chrX 125483782 125484062 -51490078 + AluJb SINE Alu 6 282 -30 1342 179 44 16 chrX 125484351 125484603 -51489537 + MIR SINE MIR 2 260 -2 2041 153 0 0 chrX 125485612 125485919 -51488221 - AluJb SINE Alu -5 307 1 1058 298 76 29 chrX 125486156 125486566 -51487574 + MLT1J2 LTR MaLR 1 429 -21 199 274 16 32 chrX 125490561 125490623 -51483517 - L3 LINE CR1 -1 1576 1516 355 342 71 54 chrX 125490936 125491176 -51482964 - L3 LINE CR1 -341 1236 993 1734 109 41 14 chrX 125491743 125492036 -51482104 + L1MA8 LINE L1 5987 6287 -4 184 333 0 18 chrX 125493997 125494054 -51480086 + MIR SINE MIR 7 62 -200 222 231 0 0 chrX 125494084 125494136 -51480004 + A-rich Low_complexity Low_complexity 1 52 0 218 250 31 16 chrX 125494154 125494218 -51479922 + MIR SINE MIR 75 139 -123 716 329 81 16 chrX 125494294 125494789 -51479351 - L2 LINE L2 -933 2381 1855 616 340 84 15 chrX 125495384 125495719 -51478421 + L3 LINE CR1 1172 1529 -48 1047 271 28 69 chrX 125495742 125496248 -51477892 - MLT1J LTR MaLR -26 485 1 182 346 0 0 chrX 125496261 125496313 -51477827 + L3 LINE CR1 1519 1570 -7 384 232 0 11 chrX 125496396 125496491 -51477649 + LTR33A LTR ERVL 430 523 0 554 258 22 66 chrX 125496676 125496858 -51477282 - L2 LINE L2 -4 3268 3095 423 284 55 37 chrX 125497841 125498032 -51476108 + MIR SINE MIR 54 245 -17 753 135 63 16 chrX 125498187 125498313 -51475827 - FLAM_C SINE Alu 0 133 2 2034 156 0 0 chrX 125498366 125498661 -51475479 + AluJo SINE Alu 1 295 -17 359 336 82 37 chrX 125498783 125498917 -51475223 + L2 LINE L2 3123 3262 -10 524 317 21 11 chrX 125499942 125500128 -51474012 + MIR SINE MIR 70 257 -5 1395 181 30 23 chrX 125501535 125501834 -51472306 + Charlie4a DNA MER1_type 1 301 -207 905 209 11 11 chrX 125501842 125502029 -51472111 + MER58A DNA MER1_type 38 224 0 745 213 40 5 chrX 125502031 125502233 -51471907 + Charlie4a DNA MER1_type 299 507 -1 1202 249 130 34 chrX 125502420 125502857 -51471283 - L2 LINE L2 0 3313 2835 543 280 21 79 chrX 125502867 125503056 -51471084 - MER5B DNA MER1_type 0 178 1 3859 236 138 8 chrX 125503058 125504137 -51470003 - L2 LINE L2 -506 2808 1590 743 200 93 47 chrX 125504152 125504367 -51469773 + MIR SINE MIR 36 260 -2 2264 102 3 0 chrX 125504425 125504719 -51469421 - AluSp SINE Alu -18 295 1 783 291 72 13 chrX 125504940 125505177 -51468963 + MIR SINE MIR 12 262 0 224 338 138 0 chrX 125505611 125505691 -51468449 + L2 LINE L2 2987 3077 -195 718 161 40 20 chrX 125505732 125505881 -51468259 - MER2 DNA MER2_type -25 320 169 526 256 0 15 chrX 125505886 125506019 -51468121 - L2 LINE L2 -1436 1878 1748 996 169 23 0 chrX 125506118 125506290 -51467850 - MER2 DNA MER2_type -169 176 1 183 329 165 0 chrX 125506326 125506411 -51467729 + L2 LINE L2 3203 3301 -12 668 296 90 9 chrX 125506779 125507012 -51467128 - MIR SINE MIR -9 253 2 938 223 55 31 chrX 125507096 125507475 -51466665 - MLT1D LTR MaLR -121 384 8 1461 190 10 17 chrX 125507517 125507817 -51466323 + MLT1D LTR MaLR 208 505 0 213 94 0 0 chrX 125508486 125508518 -51465622 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 2271 97 0 10 chrX 125508568 125508877 -51465263 + AluSc SINE Alu 1 306 -3 2096 122 14 0 chrX 125508958 125509246 -51464894 - AluSx SINE Alu -20 292 1 396 285 45 42 chrX 125509476 125509507 -51464633 - L1ME4a LINE L1 -206 5915 5886 1881 160 3 13 chrX 125509507 125509820 -51464320 - AluJo SINE Alu 0 312 3 396 285 45 42 chrX 125509820 125510076 -51464064 - L1ME4a LINE L1 -235 5886 5627 462 283 74 18 chrX 125510113 125510397 -51463743 - L1ME4a LINE L1 -753 5431 5271 329 297 39 16 chrX 125510616 125510744 -51463396 - L1ME4a LINE L1 -1092 5054 4924 273 264 155 47 chrX 125513984 125514132 -51460008 - L2 LINE L2 -5 3267 3104 950 221 26 33 chrX 125514468 125514740 -51459400 - L1ME2 LINE L1 -9 6155 5886 848 293 85 8 chrX 125517935 125518640 -51455500 + L1ME3 LINE L1 5077 5839 -323 206 159 14 43 chrX 125518676 125518745 -51455395 + (TATAA)n Simple_repeat Simple_repeat 2 68 0 1394 165 153 11 chrX 125519000 125519261 -51454879 - AluJb SINE Alu -2 300 3 1841 171 0 7 chrX 125519281 125519573 -51454567 - AluJo SINE Alu -22 290 1 2343 102 7 0 chrX 125520370 125520674 -51453466 + AluSx SINE Alu 1 306 -6 255 222 0 32 chrX 125521209 125521272 -51452868 - MLT1H LTR MaLR -374 175 115 450 270 205 31 chrX 125521713 125521972 -51452168 - L2 LINE L2 0 3272 2969 331 305 9 29 chrX 125522248 125522353 -51451787 + MIR3 SINE MIR 64 166 -42 312 250 16 24 chrX 125522428 125522552 -51451588 + MER103 DNA DNA 44 166 0 243 180 0 40 chrX 125522618 125522668 -51451472 + L3 LINE CR1 1524 1571 -6 2405 81 0 0 chrX 125522774 125523069 -51451071 + AluSg SINE Alu 1 295 -15 2225 84 7 32 chrX 125523302 125523612 -51450528 - AluSx SINE Alu -10 302 1 632 192 8 0 chrX 125524028 125524148 -51449992 + MIR3 SINE MIR 83 203 -5 193 304 11 76 chrX 125524700 125524792 -51449348 + L2 LINE L2 3184 3269 -3 228 133 0 0 chrX 125525017 125525062 -51449078 - LTR66 LTR ERVL -171 439 395 301 268 98 0 chrX 125525063 125525145 -51448995 + L1MC4 LINE L1 6614 6703 -1339 * 330 247 22 22 chrX 125525113 125525202 -51448938 - L1MC4 LINE L1 -1339 6703 6615 218 231 15 0 chrX 125525205 125525270 -51448870 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chrX 125525279 125525300 -51448840 + AT_rich Low_complexity Low_complexity 1 21 0 190 74 74 130 chrX 125526012 125526066 -51448074 + MER5A DNA MER1_type 57 107 -82 301 291 27 74 chrX 125526564 125526712 -51447428 - MIR SINE MIR -54 208 68 2605 171 53 22 chrX 125526715 125526763 -51447377 - L1MB7 LINE L1 -2 6182 6137 2032 124 13 10 chrX 125526763 125527062 -51447078 - AluSx SINE Alu -12 300 1 2605 171 53 22 chrX 125527062 125527593 -51446547 - L1MB7 LINE L1 -47 6137 5585 * 10301 32 0 0 chrX 125527592 125529588 -51444552 - L1PA4 LINE L1 0 6155 4159 5845 196 26 10 chrX 125529588 125530032 -51444108 - L1MB7 LINE L1 -603 5581 5146 252 0 0 0 chrX 125530032 125530060 -51444080 + (TC)n Simple_repeat Simple_repeat 1 28 0 5845 196 26 10 chrX 125530060 125531212 -51442928 - L1MB7 LINE L1 -1038 5146 3964 195 189 0 0 chrX 125531375 125531428 -51442712 + (CAGA)n Simple_repeat Simple_repeat 2 54 0 2342 93 0 3 chrX 125532840 125533141 -51440999 - AluSq SINE Alu -13 300 1 2535 104 16 16 chrX 125533881 125534256 -51439884 - THE1C LTR MaLR 0 375 1 1846 144 74 9 chrX 125534279 125534618 -51439522 - MER46B DNA MER2_type 0 236 1 32 57 0 0 chrX 125534637 125534690 -51439450 + AT_rich Low_complexity Low_complexity 1 53 0 28 71 0 0 chrX 125534744 125534800 -51439340 + AT_rich Low_complexity Low_complexity 1 56 0 267 294 0 0 chrX 125534803 125534871 -51439269 + MER113 DNA MER1_type? 452 519 -2 239 288 15 45 chrX 125536224 125536290 -51437850 + L2 LINE L2 3242 3305 -8 21 0 0 0 chrX 125537240 125537261 -51436879 + AT_rich Low_complexity Low_complexity 1 21 0 214 267 0 0 chrX 125537640 125537685 -51436455 + (TATG)n Simple_repeat Simple_repeat 1 45 0 758 217 33 27 chrX 125537776 125537825 -51436315 + MER5A DNA MER1_type 5 52 -137 7734 21 0 4 chrX 125537825 125539423 -51434717 + L1PA3 LINE L1 4562 6155 0 758 217 33 27 chrX 125539423 125539450 -51434690 + MER5A DNA MER1_type 52 77 -112 3920 164 23 18 chrX 125539450 125540180 -51433960 + MER50 LTR ERV1 1 734 0 758 217 33 27 chrX 125540180 125540286 -51433854 + MER5A DNA MER1_type 77 189 0 2808 222 9 1 chrX 125541365 125542018 -51432122 + L1MB7 LINE L1 4545 5202 -944 4486 169 41 11 chrX 125542050 125542992 -51431148 + L1MB7 LINE L1 5188 6157 -27 517 266 88 15 chrX 125543050 125543313 -51430827 + L1ME3A LINE L1 3884 4165 -1981 20863 161 19 15 chrX 125543357 125551042 -51423098 - L1MA2 LINE L1 0 7723 10 1685 257 87 26 chrX 125551168 125551778 -51422362 + L1ME3A LINE L1 5506 6152 -18 315 332 81 28 chrX 125551826 125552037 -51422103 + L1MC4a LINE L1 6046 6267 -1541 2176 125 0 0 chrX 125552285 125552590 -51421550 + AluSx SINE Alu 1 305 -7 1106 166 16 10 chrX 125552595 125552788 -51421352 + AluJb SINE Alu 108 301 -11 3401 199 96 65 chrX 125552796 125553585 -51420555 + L1MC5 LINE L1 6633 7477 -484 553 72 10 10 chrX 125553585 125553682 -51420458 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 3401 199 96 65 chrX 125553682 125554146 -51419994 + L1MC5 LINE L1 7477 7925 -36 864 338 53 10 chrX 125554573 125554967 -51419173 + L3 LINE CR1 1054 1464 -113 208 402 103 0 chrX 125555654 125555771 -51418369 - L2 LINE L2 -15 3257 3129 272 91 23 0 chrX 125555947 125555991 -51418149 + (CA)n Simple_repeat Simple_repeat 2 46 0 494 253 169 0 chrX 125556706 125556860 -51417280 + MER5A DNA MER1_type 10 189 0 332 295 143 0 chrX 125557026 125557135 -51417005 - L2 LINE L2 0 3313 3189 413 285 42 62 chrX 125557135 125557328 -51416812 + MER5A DNA MER1_type 1 189 0 324 106 0 0 chrX 125557361 125557408 -51416732 - L2 LINE L2 -2 3311 3265 1146 127 0 0 chrX 125557408 125557566 -51416574 - AluSg/x SINE Alu -18 294 137 1096 292 102 28 chrX 125557568 125558184 -51415956 - L2 LINE L2 -40 3273 2587 490 256 24 112 chrX 125558363 125558613 -51415527 - MLT1J1 LTR MaLR -222 228 1 576 232 139 41 chrX 125558628 125558822 -51415318 - L2 LINE L2 -685 2629 2417 556 304 72 26 chrX 125558941 125559006 -51415134 + MIR SINE MIR 46 107 -155 4411 97 40 2 chrX 125559006 125559626 -51414514 - LTR9B LTR ERV1 0 644 1 556 304 72 26 chrX 125559626 125559754 -51414386 + MIR SINE MIR 107 248 -14 213 308 0 65 chrX 125559759 125559866 -51414274 + MIR SINE MIR 163 262 0 1459 138 127 16 chrX 125560130 125560499 -51413641 - LTR48B LTR ERV1 0 644 352 267 125 217 6 chrX 125560498 125560567 -51413573 - LTR48 LTR ERV1 -514 150 42 * 2335 107 0 0 chrX 125561240 125561539 -51412601 - AluSg SINE Alu -11 299 1 1677 164 3 49 chrX 125561663 125561967 -51412173 + AluJb SINE Alu 4 293 -19 449 322 101 25 chrX 125563819 125564105 -51410035 + L2 LINE L2 3005 3312 -1 351 266 25 25 chrX 125564235 125564393 -51409747 - L1M4 LINE L1 -2774 3372 3215 * 3262 213 95 2 chrX 125564357 125565298 -51408842 + L1ME3A LINE L1 5140 6166 -4 289 257 14 0 chrX 125565322 125565392 -51408748 + MIR3 SINE MIR 137 207 -1 251 319 65 100 chrX 125566807 125567067 -51407073 - L2 LINE L2 -6 3266 3016 2274 164 41 7 chrX 125567330 125567744 -51406396 - MSTA LTR MaLR 0 428 1 287 307 14 64 chrX 125567939 125568079 -51406061 - L2 LINE L2 -193 3079 2947 746 328 81 13 chrX 125568212 125568593 -51405547 - L2 LINE L2 -687 2627 2221 1012 266 113 26 chrX 125568962 125569500 -51404640 - L2 LINE L2 -1203 2111 1527 479 284 13 26 chrX 125569534 125569689 -51404451 - L2 LINE L2 -5 3308 3156 2620 230 41 7 chrX 125569955 125570719 -51403421 - L1M4 LINE L1 -1538 4608 3819 1402 207 123 44 chrX 125570722 125571089 -51403051 - MSTD LTR MaLR 0 396 1 583 151 28 0 chrX 125571089 125571195 -51402945 - MSTD-int LTR MaLR 0 1735 1627 6630 219 57 42 chrX 125571789 125572781 -51401359 - MSTD-int LTR MaLR -103 1632 607 1703 171 29 0 chrX 125572781 125573062 -51401078 - AluJo SINE Alu -23 289 1 6630 219 57 42 chrX 125573062 125573678 -51400462 - MSTD-int LTR MaLR -1128 607 1 1398 213 85 29 chrX 125573678 125574053 -51400087 - MSTD LTR MaLR 0 396 1 1699 254 43 31 chrX 125574053 125574582 -51399558 - L1M4 LINE L1 -2326 3820 3280 1516 192 21 17 chrX 125574582 125574869 -51399271 - AluJb SINE Alu -21 291 4 1699 254 43 31 chrX 125574869 125575015 -51399125 - L1M4 LINE L1 -2866 3280 3137 6570 99 25 26 chrX 125575028 125576197 -51397943 - L1MA2 LINE L1 -7 7716 6552 * 8539 173 23 59 chrX 125576183 125576806 -51397334 - L1MA2 LINE L1 -1986 5579 4935 1244 84 6 0 chrX 125576806 125576985 -51397155 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 8539 173 23 59 chrX 125576985 125577070 -51397070 - L1MA2 LINE L1 -2630 4935 4848 24572 51 2 1 chrX 125577070 125580966 -51393174 - L1PA5 LINE L1 -4 6150 2250 8539 173 23 59 chrX 125580966 125582826 -51391314 - L1MA2 LINE L1 -2717 4848 3110 2054 179 52 42 chrX 125582833 125583257 -51390883 + MSTA LTR MaLR 1 428 0 369 244 17 35 chrX 125583281 125583396 -51390744 + L1MC4 LINE L1 7929 8041 -1 1052 287 66 97 chrX 125583408 125584811 -51389329 - HAL1 LINE L1 -999 1508 150 2798 45 0 53 chrX 125584936 125585042 -51389098 - L1PA8 LINE L1 -13 6159 6049 2396 77 7 0 chrX 125585042 125585339 -51388801 - AluSc SINE Alu -10 299 1 2798 45 0 53 chrX 125585339 125585608 -51388532 - L1PA8 LINE L1 -123 6049 5804 411 229 203 8 chrX 125585640 125585758 -51388382 - MER5A DNA MER1_type -1 188 48 9012 173 25 22 chrX 125586092 125587789 -51386351 + L1PB1 LINE L1 189 1880 -4987 2311 95 0 13 chrX 125587789 125588095 -51386045 + AluY SINE Alu 1 302 -9 9012 173 25 22 chrX 125588095 125589841 -51384299 + L1PB1 LINE L1 1880 3620 -3247 369 0 0 0 chrX 125589841 125589882 -51384258 + (CA)n Simple_repeat Simple_repeat 2 42 0 9012 173 25 22 chrX 125589882 125590208 -51383932 + L1PB1 LINE L1 3620 3944 -2923 7108 27 1 0 chrX 125590208 125591046 -51383094 + L1PA4 LINE L1 5316 6154 -1 9012 173 25 22 chrX 125591046 125593472 -51380668 + L1PB1 LINE L1 3944 6640 -227 593 324 80 5 chrX 125593492 125593719 -51380421 - MIR SINE MIR -11 251 9 337 292 70 13 chrX 125595181 125595493 -51378647 + L1ME4a LINE L1 5635 5964 -157 716 293 19 5 chrX 125595504 125595712 -51378428 + MIR SINE MIR 15 225 -37 2657 154 16 57 chrX 125596144 125596646 -51377494 + L1M1 LINE L1 4828 5315 -871 2327 99 0 0 chrX 125596646 125596939 -51377201 + AluSg SINE Alu 1 293 -17 2657 154 16 57 chrX 125596939 125597061 -51377079 + L1M1 LINE L1 5315 5440 -746 12963 175 28 21 chrX 125597074 125600338 -51373802 + L1MA8 LINE L1 16 3254 -4311 2446 85 0 25 chrX 125600338 125600657 -51373483 + AluY SINE Alu 1 311 0 12963 175 28 21 chrX 125600657 125601785 -51372355 + L1MA8 LINE L1 3254 4372 -3193 2877 19 0 0 chrX 125601785 125602102 -51372038 + AluYb8 SINE Alu 1 317 -1 12963 175 28 21 chrX 125602102 125603075 -51371065 + L1MA8 LINE L1 4372 5792 -1773 2935 146 37 2 chrX 125603080 125603643 -51370497 - L1 LINE L1 -1070 5076 4494 1137 122 16 0 chrX 125603643 125603832 -51370308 + L1MA3 LINE L1 6114 6305 0 1015 153 0 0 chrX 125603835 125604005 -51370135 + L1MA8 LINE L1 6845 7014 -696 4005 129 22 1 chrX 125604084 125604758 -51369382 + L1MA8 LINE L1 7022 7709 -1 239 284 129 122 chrX 125605353 125605624 -51368516 - L2 LINE L2 -4 3268 2996 327 297 148 8 chrX 125605738 125605866 -51368274 - MIR3 SINE MIR -8 200 55 366 260 13 0 chrX 125605900 125605977 -51368163 - MIR SINE MIR -182 80 3 256 349 64 43 chrX 125606002 125606237 -51367903 - L2 LINE L2 -626 2688 2449 * 934 295 51 116 chrX 125606217 125606901 -51367239 + L3 LINE CR1 930 1569 -8 515 296 6 17 chrX 125607567 125607746 -51366394 + MER117 DNA MER1_type 1 177 -20 1308 148 0 0 chrX 125608743 125608952 -51365188 + MER3 DNA MER1_type 1 209 0 1361 200 69 42 chrX 125609449 125609784 -51364356 - MER2 DNA MER2_type 0 344 1 872 217 25 0 chrX 125610785 125611020 -51363120 + MER96B DNA MER1_type? 177 417 0 233 200 164 0 chrX 125611181 125611236 -51362904 - L2 LINE L2 -1 3312 3249 224 232 384 0 chrX 125611321 125611420 -51362720 - L2 LINE L2 -2 3311 3175 1853 250 63 5 chrX 125614448 125615016 -51359124 + L1MC4 LINE L1 7071 7671 -371 516 293 5 0 chrX 125615062 125615250 -51358890 + L1PB1 LINE L1 6 194 -6669 13979 191 25 5 chrX 125615250 125620929 -51353211 + L1PB1 LINE L1 903 6865 -2 583 246 59 9 chrX 125620953 125621173 -51352967 + L1MC4 LINE L1 7698 7928 -114 250 169 31 15 chrX 125621205 125621270 -51352870 + (TA)n Simple_repeat Simple_repeat 1 66 0 488 153 36 27 chrX 125621362 125621473 -51352667 + L1MC4 LINE L1 7925 8036 -6 572 228 35 0 chrX 125621716 125621830 -51352310 + MIR SINE MIR 12 129 -133 543 263 46 67 chrX 125621853 125621994 -51352146 + MIR3 SINE MIR 15 152 -56 621 256 35 17 chrX 125621994 125622166 -51351974 - MER5B DNA MER1_type -1 177 3 543 263 46 67 chrX 125622166 125622218 -51351922 + MIR3 SINE MIR 152 204 -4 41302 48 2 1 chrX 125624163 125630299 -51343841 - L1PA4 LINE L1 -3 6152 7 301 271 0 14 chrX 125631979 125632049 -51342091 - L3b LINE CR1 -3 1580 1512 999 280 155 30 chrX 125632113 125632675 -51341465 - L2 LINE L2 0 3313 2682 2131 141 74 50 chrX 125632675 125633093 -51341047 + MSTA LTR MaLR 1 428 0 999 280 155 30 chrX 125633093 125633172 -51340968 - L2 LINE L2 -631 2682 2614 302 235 22 18 chrX 125633221 125633332 -51340808 + MLT1I LTR MaLR 94 171 -238 665 257 92 14 chrX 125633558 125633776 -51340364 - L2 LINE L2 -737 2577 2343 2096 99 7 36 chrX 125633779 125634082 -51340058 - AluSq SINE Alu -19 294 1 387 276 43 35 chrX 125634488 125634604 -51339536 - MER5B DNA MER1_type -60 118 2 1910 184 0 0 chrX 125635906 125636210 -51337930 - AluJo SINE Alu -8 304 1 189 0 0 0 chrX 125636372 125636393 -51337747 + (TG)n Simple_repeat Simple_repeat 1 21 0 232 157 20 20 chrX 125637347 125637398 -51336742 + L2 LINE L2 3263 3313 0 261 83 0 0 chrX 125637920 125637956 -51336184 + (CA)n Simple_repeat Simple_repeat 2 37 0 34 24 0 0 chrX 125638729 125638770 -51335370 + AT_rich Low_complexity Low_complexity 1 41 0 822 201 0 0 chrX 125638826 125638965 -51335175 + FLAM_C SINE Alu 1 139 -4 1247 212 79 13 chrX 125639009 125639325 -51334815 - MER46C DNA MER2_type -1 337 1 276 53 0 0 chrX 125640995 125641033 -51333107 + (TGG)n Simple_repeat Simple_repeat 3 40 0 1288 159 131 4 chrX 125641033 125641285 -51332855 - AluJb SINE Alu -18 284 1 530 199 54 48 chrX 125641635 125641801 -51332339 - MIR SINE MIR -56 206 40 610 271 124 0 chrX 125642483 125642693 -51331447 + MIR SINE MIR 17 252 -10 2146 163 24 6 chrX 125642774 125643112 -51331028 + MER2 DNA MER2_type 1 344 0 1737 170 56 17 chrX 125644065 125644423 -51329717 - L1MCa LINE L1 -4772 1654 1283 * 2930 226 91 19 chrX 125644420 125645575 -51328565 - L1MDb LINE L1 -4436 1970 775 377 293 9 9 chrX 125646271 125646387 -51327753 - L1MDb LINE L1 -5939 457 342 209 351 0 26 chrX 125646666 125646743 -51327397 - MIR SINE MIR -186 76 2 257 263 70 44 chrX 125647129 125647243 -51326897 + MLT1H LTR MaLR 431 547 -2 296 329 35 41 chrX 125647695 125647865 -51326275 + MIR SINE MIR 13 181 -81 301 200 200 27 chrX 125648564 125648674 -51325466 - MIR SINE MIR -15 247 119 670 234 126 56 chrX 125648827 125649058 -51325082 + MIR SINE MIR 11 257 -5 252 346 20 0 chrX 125649149 125649250 -51324890 - MIR3 SINE MIR -9 199 97 203 316 0 0 chrX 125649310 125649367 -51324773 + MIR SINE MIR 87 143 -65 324 321 36 9 chrX 125650414 125650526 -51323614 - MIR3 SINE MIR -91 117 3 197 220 0 17 chrX 125650588 125650647 -51323493 + (TATG)n Simple_repeat Simple_repeat 3 60 0 235 240 0 0 chrX 125651027 125651077 -51323063 + tRNA-Lys-AAA tRNA tRNA 2 51 -25 278 197 0 28 chrX 125651280 125651351 -51322789 + (CACCT)n Simple_repeat Simple_repeat 2 70 0 221 239 0 0 chrX 125651487 125651533 -51322607 + GA-rich Low_complexity Low_complexity 1 46 0 1587 305 79 96 chrX 125652159 125653495 -51320645 + L3 LINE CR1 185 1497 -80 687 241 96 28 chrX 125653502 125653806 -51320334 - MLT1K LTR MaLR 0 588 224 2271 128 27 29 chrX 125654309 125654685 -51319455 + THE1C LTR MaLR 1 375 0 295 226 185 55 chrX 125655096 125655242 -51318898 - L2 LINE L2 0 3313 3149 1165 233 47 42 chrX 125656102 125656553 -51317587 + L1MDb LINE L1 792 1244 -5165 183 276 41 90 chrX 125656558 125656638 -51317502 - L2 LINE L2 -218 3054 2983 1996 190 172 36 chrX 125656638 125657137 -51317003 - MLT1F1 LTR MaLR 0 567 1 183 276 41 90 chrX 125657137 125657201 -51316939 - L2 LINE L2 -289 2983 2917 658 264 36 0 chrX 125658785 125658952 -51315188 + MIR SINE MIR 50 222 -40 182 281 94 31 chrX 125659337 125659401 -51314739 + L2 LINE L2 3153 3220 -52 279 152 8 235 chrX 125659403 125659535 -51314605 + MER20 DNA MER1_type 3 104 -115 468 259 0 0 chrX 125659540 125659652 -51314488 + MIR SINE MIR 104 215 -47 451 116 0 0 chrX 125659802 125659871 -51314269 + L1P LINE L1 5329 5397 -769 15060 193 20 11 chrX 125659893 125664683 -51309457 + L1PB1 LINE L1 6 5144 -1723 261 0 0 0 chrX 125664683 125664712 -51309428 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 15060 193 20 11 chrX 125664712 125666454 -51307686 + L1PB1 LINE L1 5144 6867 0 22 56 0 0 chrX 125666470 125666506 -51307634 + AT_rich Low_complexity Low_complexity 1 36 0 434 202 0 84 chrX 125666534 125666653 -51307487 + MER20 DNA MER1_type 111 219 0 3381 176 2 5 chrX 125667270 125668166 -51305974 + L1P4 LINE L1 4880 5771 -395 706 298 40 46 chrX 125668261 125668334 -51305806 + L1MC4a LINE L1 5354 5426 -695 2066 117 0 7 chrX 125668334 125668659 -51305481 + AluSx SINE Alu 1 323 0 706 298 40 46 chrX 125668659 125668908 -51305232 + L1MC4a LINE L1 5426 5449 -672 1426 124 58 13 chrX 125668908 125669134 -51305006 + MER46A DNA MER2_type 1 236 0 706 298 40 46 chrX 125669134 125669385 -51304755 + L1MC4a LINE L1 5449 5700 -421 2311 84 3 0 chrX 125670853 125671139 -51303001 + AluSp SINE Alu 1 287 -26 31 26 0 0 chrX 125671142 125671180 -51302960 + AT_rich Low_complexity Low_complexity 1 38 0 4708 144 72 11 chrX 125671310 125672152 -51301988 - L1MB3 LINE L1 -30 6153 5260 1837 152 7 33 chrX 125673167 125673469 -51300671 + AluJb SINE Alu 1 294 -18 1753 252 84 44 chrX 125674687 125675235 -51298905 + MLT1E LTR MaLR 22 591 -2 3242 166 79 55 chrX 125675862 125676572 -51297568 + LTR8A LTR ERV1 1 727 0 2343 144 9 0 chrX 125677351 125677691 -51296449 - MER61A LTR ERV1 0 343 1 25 0 0 0 chrX 125678554 125678579 -51295561 + AT_rich Low_complexity Low_complexity 1 25 0 485 257 105 26 chrX 125679012 125679164 -51294976 - MIR SINE MIR -7 255 92 302 272 125 29 chrX 125679539 125679675 -51294465 + MIR SINE MIR 74 222 -40 1848 161 3 16 chrX 125679851 125680167 -51293973 - AluJo SINE Alu 0 312 1 1877 136 156 12 chrX 125680308 125680647 -51293493 + LTR48 LTR ERV1 1 388 -399 2853 193 50 57 chrX 125680648 125681435 -51292705 + LTR48B-int LTR ERV1 5388 6168 -163 627 111 10 30 chrX 125681535 125681634 -51292506 + LTR48B LTR ERV1 1 97 -547 1671 164 3 49 chrX 125681867 125682171 -51291969 - AluJb SINE Alu -19 293 4 2343 117 0 0 chrX 125682295 125682603 -51291537 + AluSg SINE Alu 1 308 -2 186 71 0 0 chrX 125683594 125683622 -51290518 + (CA)n Simple_repeat Simple_repeat 1 28 0 243 315 0 41 chrX 125684086 125684159 -51289981 - L2 LINE L2 0 3313 3244 939 194 0 24 chrX 125684230 125684358 -51289782 - MER5A DNA MER1_type 0 189 64 3581 32 2 0 chrX 125684358 125684759 -51289381 - L1PA2 LINE L1 0 6155 5754 939 194 0 24 chrX 125684759 125684800 -51289340 - MER5A DNA MER1_type -125 64 24 286 323 23 39 chrX 125684814 125684944 -51289196 + MIR SINE MIR 11 138 -124 444 352 125 24 chrX 125685585 125685987 -51288153 - L2 LINE L2 -220 3093 2643 2623 139 20 15 chrX 125686462 125686866 -51287274 - MSTB LTR MaLR -20 406 1 2278 182 35 31 chrX 125688443 125688900 -51285240 - MLT1D LTR MaLR -46 459 1 727 230 89 40 chrX 125689623 125689871 -51284269 - MIR SINE MIR -1 261 2 273 231 9 19 chrX 125690407 125690515 -51283625 + GA-rich Low_complexity Low_complexity 1 107 0 308 264 0 46 chrX 125690715 125690802 -51283338 - L2 LINE L2 -6 3266 3184 485 24 61 12 chrX 125691433 125691515 -51282625 + (GAAAA)n Simple_repeat Simple_repeat 3 88 0 288 231 56 69 chrX 125692232 125692392 -51281748 - L2 LINE L2 -10 3303 3146 1741 201 27 39 chrX 125692463 125692902 -51281238 - LTR40b LTR ERVL 0 462 29 258 254 169 0 chrX 125693053 125693124 -51281016 - MIR3 SINE MIR -21 187 105 716 325 55 11 chrX 125694157 125694428 -51279712 + L3 LINE CR1 989 1271 -306 996 120 74 0 chrX 125694434 125694609 -51279531 - L1MA9 LINE L1 0 6312 6125 901 19 0 0 chrX 125694625 125694729 -51279411 - L1PA3 LINE L1 -3 6152 6049 1067 133 26 96 chrX 125694730 125695000 -51279140 - L1MA9 LINE L1 -198 6114 5864 228 345 50 0 chrX 125695026 125695145 -51278995 + L3 LINE CR1 1291 1415 -162 182 264 36 100 chrX 125695407 125695517 -51278623 - MIR3 SINE MIR -2 206 104 1732 162 0 11 chrX 125696265 125696543 -51277597 - AluSx SINE Alu -5 307 33 877 294 79 48 chrX 125696754 125697271 -51276869 - MLT1K LTR MaLR 0 588 56 187 313 62 21 chrX 125697356 125697452 -51276688 - MIR SINE MIR -152 110 11 537 292 82 43 chrX 125697666 125697899 -51276241 + MIR SINE MIR 18 259 -3 273 351 16 18 chrX 125698091 125698227 -51275913 - MIR SINE MIR -62 146 30 270 56 0 0 chrX 125698429 125698465 -51275675 - MLT2B1 LTR ERVL -10 505 470 1212 209 153 51 chrX 125698541 125698953 -51275187 - MLT2B1 LTR ERVL -66 454 1 307 115 0 0 chrX 125699628 125699680 -51274460 + L1MB2 LINE L1 6120 6171 0 213 299 102 86 chrX 125699928 125700172 -51273968 + L2 LINE L2 3019 3266 -6 343 315 69 15 chrX 125700231 125700361 -51273779 + L2 LINE L2 3101 3237 -35 535 286 50 6 chrX 125700479 125700640 -51273500 - MIR SINE MIR -46 216 49 270 152 0 0 chrX 125700696 125700742 -51273398 + L2 LINE L2 3268 3313 0 5757 32 4 3 chrX 125700756 125701442 -51272698 - L1PA5 LINE L1 0 6154 5468 342 246 236 0 chrX 125702405 125702515 -51271625 - MER5A DNA MER1_type 0 189 54 199 284 40 14 chrX 125702942 125703016 -51271124 + MIR SINE MIR 174 249 -13 260 57 0 0 chrX 125703137 125703172 -51270968 - MLT2C1 LTR ERVL 0 397 363 229 67 0 0 chrX 125703172 125703202 -51270938 + (CA)n Simple_repeat Simple_repeat 1 30 0 243 152 0 0 chrX 125703203 125703249 -51270891 + (TA)n Simple_repeat Simple_repeat 1 46 0 1890 170 32 0 chrX 125703264 125703606 -51270534 - MLT2C1 LTR ERVL -42 355 3 416 192 240 41 chrX 125703626 125703772 -51270368 - MER5B DNA MER1_type -3 175 1 282 300 150 20 chrX 125703789 125703889 -51270251 - MIR SINE MIR -62 146 34 330 273 12 50 chrX 125703948 125704109 -51270031 + L1MC5 LINE L1 7746 7900 -61 1934 245 32 27 chrX 125704523 125705067 -51269073 - L1MEc LINE L1 -3470 2745 2236 1798 158 9 43 chrX 125705067 125705390 -51268750 - AluJb SINE Alu 0 312 1 1934 245 32 27 chrX 125705390 125705902 -51268238 - L1MEc LINE L1 -3979 2236 1728 323 257 64 18 chrX 125705915 125706024 -51268116 - L1MEc LINE L1 -4440 1956 1843 872 156 13 13 chrX 125706047 125706201 -51267939 - Tigger2 DNA MER2_type -11 2707 2554 2706 194 2 2 chrX 125706202 125706788 -51267352 + L1 LINE L1 4424 5009 -1137 3987 199 32 31 chrX 125706789 125707729 -51266411 + L1M1 LINE L1 12 952 -6613 2272 105 35 24 chrX 125707729 125708100 -51266040 + THE1C LTR MaLR 1 375 0 2338 99 33 6 chrX 125708100 125708465 -51265675 + THE1C-int LTR MaLR 1 375 -1205 1472 65 0 0 chrX 125708464 125708663 -51265477 - THE1B-int LTR MaLR -1380 200 2 * 1778 119 109 16 chrX 125708680 125708983 -51265157 - THE1B LTR MaLR -33 331 1 4196 130 11 3 chrX 125708983 125709729 -51264411 + L1M1 LINE L1 1950 2701 -4864 40226 40 23 1 chrX 125709730 125715738 -51258402 + L1PA3 LINE L1 15 6155 0 2199 73 6 12 chrX 125715792 125716120 -51258020 + L1M1 LINE L1 2690 3015 -4550 1852 158 0 33 chrX 125716120 125716423 -51257717 + AluSx SINE Alu 1 293 -19 969 116 8 0 chrX 125716446 125716575 -51257565 + AluSq/x SINE Alu 1 130 -183 4603 167 16 3 chrX 125716576 125718146 -51255994 + L1M1 LINE L1 3010 4629 -2936 1840 108 50 4 chrX 125718164 125718442 -51255698 - L1PA11 LINE L1 0 6174 5884 1057 141 45 0 chrX 125718442 125718613 -51255527 + L1PA10 LINE L1 5979 6163 -5 200 254 36 0 chrX 125718964 125719019 -51255121 + MIR SINE MIR 201 257 -5 15620 194 42 10 chrX 125719074 125720918 -51253222 + L1M1 LINE L1 223 2007 -5558 1939 141 3 0 chrX 125720918 125721201 -51252939 + AluSq SINE Alu 13 296 -17 15620 194 42 10 chrX 125721201 125724874 -51249266 + L1M1 LINE L1 2007 5915 -1650 38187 48 2 1 chrX 125724882 125730639 -51243501 + L1PA5 LINE L1 391 6153 -1 1351 230 61 24 chrX 125730661 125731039 -51243101 - ERVL-B1 LTR ERVL -5371 393 2 295 185 0 0 chrX 125731040 125731105 -51243035 - MLT2B1 LTR ERVL 0 520 456 534 57 0 0 chrX 125731145 125731215 -51242925 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 1928 187 133 0 chrX 125731218 125731630 -51242510 - MLT2B1 LTR ERVL -44 476 10 30 59 0 0 chrX 125731639 125731690 -51242450 + AT_rich Low_complexity Low_complexity 1 51 0 1073 147 23 47 chrX 125732086 125732337 -51241803 + LTR8 LTR ERV1 390 629 -98 252 0 0 0 chrX 125732337 125732365 -51241775 + (TAA)n Simple_repeat Simple_repeat 2 29 0 237 292 0 15 chrX 125732638 125732703 -51241437 - L2 LINE L2 -2 3270 3207 216 0 0 0 chrX 125732743 125732767 -51241373 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 488 267 0 25 chrX 125732950 125733111 -51241029 + LTR55 LTR ERV 368 524 -24 975 265 5 0 chrX 125734721 125734940 -51239200 - MIR SINE MIR -3 259 40 204 233 0 23 chrX 125734948 125734991 -51239149 - MIR SINE MIR -175 87 46 1055 163 0 6 chrX 125737351 125737523 -51236617 - MLT1J LTR MaLR -279 232 62 5141 92 81 7 chrX 125737525 125738183 -51235957 + L1PB1 LINE L1 5104 5850 -301 576 0 0 0 chrX 125738183 125738247 -51235893 + (TA)n Simple_repeat Simple_repeat 2 65 0 5141 92 81 7 chrX 125738247 125738573 -51235567 + L1PB1 LINE L1 5850 6150 -1 2195 122 0 28 chrX 125738647 125738967 -51235173 + AluSx SINE Alu 2 312 0 385 343 75 8 chrX 125739025 125739159 -51234981 + MER91A DNA MER1_type 2 144 -52 1925 177 45 52 chrX 125739165 125739589 -51234551 - MSTB LTR MaLR -5 421 1 308 260 0 0 chrX 125739603 125739680 -51234460 - MER116 DNA Mariner 0 80 4 1849 232 77 25 chrX 125739733 125740255 -51233885 + MLT1H LTR MaLR 1 549 0 549 236 91 18 chrX 125740267 125740432 -51233708 - MIR SINE MIR -81 181 5 1878 162 46 29 chrX 125740495 125740909 -51233231 + MER63B DNA MER1_type 12 432 -4 225 0 0 0 chrX 125741622 125741647 -51232493 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chrX 125741646 125741679 -51232461 + (TG)n Simple_repeat Simple_repeat 2 34 0 305 321 57 78 chrX 125741770 125742119 -51232021 + L2 LINE L2 2796 3118 -154 1032 136 33 5 chrX 125742119 125742303 -51231837 + MER53 DNA DNA 1 189 0 305 321 57 78 chrX 125742303 125742446 -51231694 + L2 LINE L2 3118 3263 -9 446 263 28 84 chrX 125742482 125742540 -51231600 - MIR SINE MIR -56 206 146 3577 48 21 0 chrX 125742540 125742975 -51231165 + MLT2A1 LTR ERVL 1 444 0 446 263 28 84 chrX 125742975 125743129 -51231011 - MIR SINE MIR -116 146 6 477 252 10 0 chrX 125744083 125744186 -51229954 - MIR SINE MIR -75 187 84 455 299 60 0 chrX 125744398 125744565 -51229575 + MER104 DNA Tc2 4 180 0 788 228 82 115 chrX 125744714 125745200 -51228940 - MLT1H LTR MaLR 0 549 80 296 281 0 12 chrX 125747273 125747355 -51226785 - MIR SINE MIR 0 262 182 6088 61 1 5 chrX 125747415 125748189 -51225951 - L1PA8A LINE L1 -1 6130 5360 4714 108 8 0 chrX 125748188 125748908 -51225232 + L1PA8A LINE L1 4627 5352 -794 * 235 167 0 0 chrX 125748956 125748998 -51225142 - HsTC2 DNA Tc2 -12 1886 1845 482 230 22 74 chrX 125749081 125749216 -51224924 - MIR SINE MIR -111 151 24 725 166 77 33 chrX 125749899 125750080 -51224060 + MER53 DNA DNA 1 189 0 592 243 73 123 chrX 125750524 125751413 -51222727 + HAL1 LINE L1 863 1707 -800 562 300 111 25 chrX 125751737 125752483 -51221657 + L1M4c LINE L1 2333 3128 -3254 2179 187 27 2 chrX 125752489 125752963 -51221177 + L1PA12 LINE L1 4730 5191 -955 7191 149 19 0 chrX 125752963 125753157 -51220983 + L1PA12 LINE L1 4054 4243 -1925 2454 87 3 0 chrX 125753157 125753469 -51220671 + AluSp SINE Alu 1 313 0 7191 149 19 0 chrX 125753469 125754258 -51219882 + L1PA12 LINE L1 4243 5016 -1152 2087 120 17 0 chrX 125754258 125754558 -51219582 + AluSx SINE Alu 1 305 -7 7191 149 19 0 chrX 125754558 125755688 -51218452 + L1PA12 LINE L1 5016 6167 -1 1491 128 41 4 chrX 125755699 125755941 -51218199 + L1PA16 LINE L1 5915 6165 -1 2628 239 60 19 chrX 125756028 125756760 -51217380 + L1ME3A LINE L1 5385 6146 -24 265 261 0 11 chrX 125756737 125756825 -51217315 - L1MC4 LINE L1 -1342 6700 6614 * 239 279 47 0 chrX 125756785 125756871 -51217269 + L1MC4 LINE L1 6614 6703 -1339 * 229 244 98 0 chrX 125756897 125756979 -51217161 + L1MC4 LINE L1 6614 6703 -1339 * 240 283 0 22 chrX 125756911 125757003 -51217137 - L1MC4 LINE L1 -1339 6703 6614 322 281 21 10 chrX 125757033 125757129 -51217011 + L1MC4 LINE L1 6607 6703 -1339 474 248 0 0 chrX 125757138 125757263 -51216877 + (TA)n Simple_repeat Simple_repeat 1 125 0 300 305 54 51 chrX 125757290 125757659 -51216481 + L1M4 LINE L1 2964 3337 -2809 2145 92 30 3 chrX 125757659 125757962 -51216178 + AluY SINE Alu 1 311 0 300 305 54 51 chrX 125757962 125758183 -51215957 + L1M4 LINE L1 3337 3556 -2590 693 169 124 51 chrX 125758476 125758654 -51215486 + MIR SINE MIR 66 256 -6 1099 123 6 6 chrX 125758932 125759111 -51215029 - L1MB4 LINE L1 0 6180 6002 1725 201 86 34 chrX 125759378 125759822 -51214318 + MLT1C LTR MaLR 1 467 0 32272 32 14 0 chrX 125760872 125765597 -51208543 + L1PA3 LINE L1 1365 6153 -2 33 43 0 0 chrX 125765597 125765644 -51208496 + AT_rich Low_complexity Low_complexity 1 47 0 6420 231 34 61 chrX 125765967 125768635 -51205505 + L1MA7 LINE L1 1 2203 -4147 2018 117 3 24 chrX 125768635 125768960 -51205180 + AluSx SINE Alu 1 319 0 6420 231 34 61 chrX 125768960 125769864 -51204276 + L1MA7 LINE L1 2203 3130 -3220 2156 109 36 0 chrX 125769875 125770204 -51203936 + L1PA16 LINE L1 5825 6165 -1 6437 127 25 14 chrX 125770476 125772500 -51201640 + L1MA7 LINE L1 4449 6494 -1 21 36 0 0 chrX 125772521 125772549 -51201591 + AT_rich Low_complexity Low_complexity 1 28 0 294 349 57 19 chrX 125772549 125772655 -51201485 - L2 LINE L2 -27 3245 3136 1314 277 6 62 chrX 125772900 125773449 -51200691 - L2 LINE L2 -451 2863 2346 6200 54 11 0 chrX 125773505 125774297 -51199843 - L1PA7 LINE L1 -2 6152 5352 7220 20 0 20 chrX 125774323 125775186 -51198954 - L1PA3 LINE L1 0 6155 5310 2651 103 13 8 chrX 125775187 125775584 -51198556 - L1PA8 LINE L1 -7 6165 5767 896 315 82 19 chrX 125775584 125776013 -51198127 - L2 LINE L2 -960 2354 1899 2243 104 10 3 chrX 125776105 125776404 -51197736 + AluSx SINE Alu 1 301 -11 180 100 33 0 chrX 125776572 125776602 -51197538 + MIR3 SINE MIR 173 203 -5 2501 22 0 0 chrX 125777768 125778080 -51196060 - L1PA3 LINE L1 -2951 3195 2884 18119 33 0 0 chrX 125778080 125781046 -51193094 + L1PA3 LINE L1 3180 6151 -4 189 0 0 0 chrX 125781363 125781384 -51192756 + (A)n Simple_repeat Simple_repeat 1 21 0 5888 188 23 27 chrX 125781877 125784043 -51190097 + L1MB8 LINE L1 4015 6172 -6 1920 191 59 11 chrX 125784044 125784488 -51189652 + MLT1C LTR MaLR 3 467 0 543 269 44 19 chrX 125784538 125784698 -51189442 + MIR3 SINE MIR 18 181 -27 427 298 18 6 chrX 125785681 125785849 -51188291 + HAL1 LINE L1 1517 1686 -821 2951 162 21 62 chrX 125786274 125786905 -51187235 + L1MB7 LINE L1 5580 6184 0 1398 283 82 29 chrX 125786969 125787839 -51186301 + L1MB8 LINE L1 3522 4437 -1709 391 286 52 19 chrX 125787867 125788080 -51186060 + L1MB8 LINE L1 4581 4800 -1346 687 150 0 0 chrX 125788080 125788193 -51185947 - MER58 DNA MER1_type 0 2420 2308 396 306 9 0 chrX 125788313 125788421 -51185719 - MER81 DNA DNA -5 109 1 257 209 0 0 chrX 125788813 125788856 -51185284 - MER58 DNA MER1_type -172 43 1 939 291 20 38 chrX 125788884 125789481 -51184659 + L1MB8 LINE L1 4821 5410 -761 645 287 127 28 chrX 125789499 125789718 -51184422 - MLT1J2 LTR MaLR -23 427 231 225 94 0 0 chrX 125789718 125789750 -51184390 + (CAGGA)n Simple_repeat Simple_repeat 2 33 0 381 43 0 0 chrX 125789753 125789800 -51184340 + (CATAG)n Simple_repeat Simple_repeat 4 50 0 645 287 127 28 chrX 125789800 125789963 -51184177 - MLT1J2 LTR MaLR -220 230 3 255 266 120 19 chrX 125790004 125790162 -51183978 + L1MB8 LINE L1 5703 5876 -294 475 186 9 21 chrX 125790320 125790547 -51183593 + L1MA7 LINE L1 5961 6290 -1 917 206 69 17 chrX 125790557 125790790 -51183350 + L1MB8 LINE L1 5928 6172 -6 357 324 9 0 chrX 125791409 125791517 -51182623 - MIR SINE MIR -56 206 98 2949 120 24 12 chrX 125791769 125792269 -51181871 - L1MA4A LINE L1 -5 7000 6495 202 54 27 27 chrX 125792270 125792307 -51181833 + (TA)n Simple_repeat Simple_repeat 2 38 0 20376 74 8 2 chrX 125792310 125795885 -51178255 - L1PA7 LINE L1 -6 6148 2555 14508 161 18 14 chrX 125795886 125798361 -51175779 - L1MA4A LINE L1 -519 6486 4007 2030 111 0 14 chrX 125798361 125798641 -51175499 - AluSq SINE Alu -16 297 22 14508 161 18 14 chrX 125798641 125799393 -51174747 - L1MA4A LINE L1 -2998 4007 3259 8656 190 42 12 chrX 125799399 125800979 -51173161 - L1MA4A LINE L1 -5220 1629 2 3294 261 71 45 chrX 125801108 125802712 -51171428 + HAL1 LINE L1 74 1917 -590 495 312 5 15 chrX 125802808 125803013 -51171127 + HAL1b LINE L1 557 759 -589 450 326 51 18 chrX 125803127 125803403 -51170737 + MLT1J LTR MaLR 224 508 -3 231 108 0 0 chrX 125803407 125803444 -51170696 + HAL1b LINE L1 759 795 -553 738 229 33 16 chrX 125803463 125803707 -51170433 + HAL1b LINE L1 862 1109 -239 1279 86 0 17 chrX 125803708 125803883 -51170257 + AluY SINE Alu 116 287 -24 306 297 0 22 chrX 125803883 125803899 -51170241 - L1MC4 LINE L1 -1340 6702 6687 1044 151 0 0 chrX 125803899 125804078 -51170062 + (TA)n Simple_repeat Simple_repeat 2 180 0 306 297 0 22 chrX 125804078 125804152 -51169988 - L1MC4 LINE L1 -1355 6687 6614 * 341 300 0 0 chrX 125804090 125804180 -51169960 + L1MC4 LINE L1 6614 6703 -1339 183 156 0 0 chrX 125804180 125804212 -51169928 + (TATG)n Simple_repeat Simple_repeat 2 33 0 342 261 23 0 chrX 125804212 125804300 -51169840 + L1MC4 LINE L1 6614 6703 -1339 334 233 24 8 chrX 125804280 125804404 -51169736 + L1MC4 LINE L1 1995 6983 -1339 * 319 322 0 0 chrX 125804376 125804466 -51169674 - L1MC4 LINE L1 -1339 6703 6614 * 345 300 0 0 chrX 125804422 125804512 -51169628 + L1MC4 LINE L1 6614 6703 -1339 230 276 0 0 chrX 125804512 125804599 -51169541 + L1MC4 LINE L1 6614 6700 -1342 475 115 23 0 chrX 125804601 125804650 -51169490 + (TA)n Simple_repeat Simple_repeat 1 54 -35 2164 119 0 0 chrX 125804650 125804936 -51169204 + AluSx SINE Alu 2 287 -25 475 115 23 0 chrX 125804936 125804973 -51169167 + (TA)n Simple_repeat Simple_repeat 54 89 0 326 283 46 26 chrX 125804997 125805149 -51168991 + HAL1b LINE L1 1187 1341 -7 1587 126 4 31 chrX 125805525 125805786 -51168354 - AluSg SINE Alu -9 301 48 653 92 10 20 chrX 125805793 125805891 -51168249 - AluSg SINE Alu -179 131 35 187 339 125 9 chrX 125806014 125806126 -51168014 + L2 LINE L2 2894 3018 -254 479 281 158 18 chrX 125806183 125806354 -51167786 + MER91A DNA MER1_type 1 195 -1 279 339 97 8 chrX 125806378 125806502 -51167638 + L2 LINE L2 3134 3268 -4 185 272 136 10 chrX 125806626 125806729 -51167411 - MIR SINE MIR 0 262 147 265 362 50 14 chrX 125806857 125806998 -51167142 - MIR SINE MIR -111 151 6 28 29 0 0 chrX 125808327 125808362 -51165778 + AT_rich Low_complexity Low_complexity 1 35 0 755 132 88 176 chrX 125809062 125809205 -51164935 + MER5A DNA MER1_type 1 122 -67 898 77 8 0 chrX 125809205 125809322 -51164818 - 5S rRNA rRNA -3 118 1 755 132 88 176 chrX 125809322 125809382 -51164758 + MER5A DNA MER1_type 122 186 -3 266 211 11 44 chrX 125810609 125810699 -51163441 + (TAAA)n Simple_repeat Simple_repeat 2 88 0 601 187 75 2 chrX 125811382 125811521 -51162619 + MLT1H LTR MaLR 435 547 -2 255 136 51 34 chrX 125813677 125813736 -51160404 + (TTAGG)n Simple_repeat Simple_repeat 3 62 0 1763 163 0 7 chrX 125813830 125814125 -51160015 + AluJb SINE Alu 1 293 -19 2409 35 0 3 chrX 125815121 125815427 -51158713 + AluY SINE Alu 1 305 0 1681 275 46 4 chrX 125815712 125816166 -51157974 - LTR16C LTR ERVL 0 491 19 501 244 113 75 chrX 125818635 125818954 -51155186 + MLT1I LTR MaLR 79 409 0 910 151 52 6 chrX 125820272 125820444 -51153696 + MER104 DNA MER2_type 1 180 0 1190 185 69 10 chrX 125821290 125821641 -51152499 + L1ME1 LINE L1 5740 6166 -193 225 0 0 0 chrX 125821641 125821666 -51152474 + (CA)n Simple_repeat Simple_repeat 1 25 0 1190 185 69 10 chrX 125821666 125821859 -51152281 + L1ME1 LINE L1 6166 6346 -13 571 253 6 6 chrX 125821895 125822053 -51152087 + MER103 DNA DNA 2 159 -7 21 0 0 0 chrX 125822345 125822366 -51151774 + AT_rich Low_complexity Low_complexity 1 21 0 621 232 95 87 chrX 125822465 125822715 -51151425 + L1ME4a LINE L1 5314 5582 -572 1623 161 26 104 chrX 125822715 125823138 -51151002 + MLT1B LTR MaLR 1 390 0 621 232 95 87 chrX 125823138 125823304 -51150836 + L1ME4a LINE L1 5582 5745 -409 334 245 46 73 chrX 125823351 125823502 -51150638 + L1ME4a LINE L1 5951 6097 -24 2636 53 0 0 chrX 125824375 125824677 -51149463 - AluY SINE Alu -9 302 1 404 256 30 42 chrX 125825153 125825321 -51148819 + MER103 DNA DNA 1 166 0 3500 159 49 0 chrX 125825433 125826029 -51148111 + Tigger1 DNA MER2_type 1 625 -1793 9499 69 8 6 chrX 125826029 125827321 -51146819 + L1PA7 LINE L1 4054 5347 -799 1248 33 0 0 chrX 125827321 125827471 -51146669 - L1PA5 LINE L1 0 6154 6005 6662 41 2 4 chrX 125827471 125828292 -51145848 + L1PA7 LINE L1 5335 6154 0 11895 111 25 3 chrX 125828292 125830062 -51144078 + Tigger1 DNA MER2_type 611 2418 0 831 307 64 62 chrX 125830212 125830616 -51143524 - L3 LINE CR1 -1 1576 1172 1475 219 17 3 chrX 125830697 125830998 -51143142 - MER58B DNA MER1_type 0 341 37 2240 114 0 0 chrX 125831815 125832112 -51142028 + AluSc SINE Alu 3 299 -10 208 354 0 0 chrX 125832473 125832538 -51141602 - L2 LINE L2 -18 3295 3231 1844 159 10 0 chrX 125832542 125832831 -51141309 + AluJo SINE Alu 1 292 -20 1704 109 0 13 chrX 125833040 125833278 -51140862 + AluSx SINE Alu 1 235 -77 31 44 0 0 chrX 125835296 125835341 -51138799 + AT_rich Low_complexity Low_complexity 1 45 0 269 329 51 25 chrX 125836080 125836238 -51137902 - L3b LINE CR1 -114 1469 1308 230 176 39 0 chrX 125836279 125836330 -51137810 - L3 LINE CR1 -730 847 795 2267 92 3 3 chrX 125836331 125836625 -51137515 + AluSq SINE Alu 2 295 -18 287 341 31 31 chrX 125836658 125836787 -51137353 - L3 LINE CR1 -770 807 679 1683 223 114 32 chrX 125837347 125837934 -51136206 + L1MC4 LINE L1 7262 7896 -146 317 165 35 94 chrX 125838051 125838136 -51136004 + L1MC4 LINE L1 7903 7982 -60 24 32 0 0 chrX 125838767 125838798 -51135342 + AT_rich Low_complexity Low_complexity 1 31 0 2232 118 3 0 chrX 125839048 125839353 -51134787 + AluSx SINE Alu 1 306 -6 242 196 65 0 chrX 125839764 125839810 -51134330 - L2 LINE L2 -4 3268 3220 654 169 197 7 chrX 125840704 125840846 -51133294 + MER21B LTR ERV1 333 501 -362 23 33 0 0 chrX 125842745 125842775 -51131365 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrX 125843068 125843088 -51131052 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 92 0 0 chrX 125843117 125843182 -51130958 + AT_rich Low_complexity Low_complexity 1 65 0 2071 120 7 10 chrX 125843258 125843557 -51130583 + AluSx SINE Alu 1 298 -14 1379 152 0 22 chrX 125845358 125845589 -51128551 - MER46A DNA MER2_type -9 227 2 202 273 0 0 chrX 125845594 125845638 -51128502 - L2 LINE L2 -86 3186 3143 259 309 110 42 chrX 125845830 125846021 -51128119 - L2 LINE L2 -560 2754 2551 2343 174 57 30 chrX 125846111 125846639 -51127501 + L1ME2 LINE L1 5623 6164 0 229 266 21 11 chrX 125846798 125846892 -51127248 + L1MC4a LINE L1 7709 7803 -5 2564 105 8 6 chrX 125847412 125847775 -51126365 + THE1B LTR MaLR 1 364 0 2200 120 0 0 chrX 125847911 125848210 -51125930 + AluSx SINE Alu 1 299 -13 463 222 132 21 chrX 125849801 125849945 -51124195 + L2 LINE L2 2554 2713 -601 2213 103 0 14 chrX 125849947 125850239 -51123901 + AluSc SINE Alu 1 288 -21 572 227 88 72 chrX 125850257 125850451 -51123689 + MIR SINE MIR 66 262 0 765 326 72 21 chrX 125850470 125851012 -51123128 + L2 LINE L2 2723 3295 -18 588 250 35 49 chrX 125851571 125851785 -51122355 + MIR SINE MIR 5 212 -50 31 76 0 0 chrX 125851974 125852040 -51122100 + AT_rich Low_complexity Low_complexity 1 66 0 2167 99 0 0 chrX 125852328 125852672 -51121468 - AluSx SINE Alu 0 344 1 30 45 0 0 chrX 125853320 125853364 -51120776 + AT_rich Low_complexity Low_complexity 1 44 0 6886 16 1 6 chrX 125854219 125855024 -51119116 + L1PA2 LINE L1 5355 6155 0 285 225 258 11 chrX 125855179 125855268 -51118872 + MIR SINE MIR 63 173 -89 1762 186 22 3 chrX 125905278 125905601 -51068539 + MLT1A1 LTR MaLR 37 365 0 252 363 158 30 chrX 125906741 125907077 -51067063 + L2 LINE L2 2597 2975 -339 259 229 57 48 chrX 125907433 125907538 -51066602 - MLT1J1 LTR MaLR -339 107 2 482 260 169 0 chrX 125907633 125907787 -51066353 - MER5A DNA MER1_type -1 188 9 249 320 56 24 chrX 125907868 125907993 -51066147 + L2 LINE L2 3142 3270 -2 607 196 182 0 chrX 125909178 125909321 -51064819 - MER96 DNA MER1_type? -6 169 1 554 328 20 37 chrX 125910226 125910525 -51063615 - MER102b DNA MER1_type -15 326 33 195 167 0 0 chrX 125911321 125911363 -51062777 + CT-rich Low_complexity Low_complexity 1 42 0 959 225 53 0 chrX 125911708 125911952 -51062188 + LTR65 LTR ERV1 391 647 -22 244 267 173 13 chrX 125912042 125912117 -51062023 + L2 LINE L2 3185 3271 -42 498 310 35 25 chrX 125912434 125912637 -51061503 - MIR SINE MIR -37 225 21 267 269 90 85 chrX 125912664 125912865 -51061275 - L2 LINE L2 -5 3308 3107 3287 24 0 0 chrX 125912898 125913279 -51060861 - L1PA3 LINE L1 -5 6150 5770 23451 28 0 0 chrX 125913380 125916952 -51057188 - L1PA2 LINE L1 -5 6150 2578 2265 90 6 26 chrX 125917098 125917410 -51056730 + AluSg SINE Alu 1 306 -4 2504 83 0 3 chrX 125918628 125918940 -51055200 + AluSx SINE Alu 1 311 -1 414 230 170 37 chrX 125919473 125919608 -51054532 - MER5A DNA MER1_type 0 189 37 539 258 74 0 chrX 125919608 125919771 -51054369 + MLT1A2 LTR MaLR 1 175 -215 478 266 4 26 chrX 125919793 125920036 -51054104 + CT-rich Low_complexity Low_complexity 1 237 0 762 201 45 6 chrX 125920069 125920248 -51053892 + MLT1A2 LTR MaLR 189 374 0 418 314 89 18 chrX 125921029 125921198 -51052942 - MER5A DNA MER1_type -7 182 2 189 0 0 0 chrX 125921580 125921601 -51052539 + (A)n Simple_repeat Simple_repeat 1 21 0 327 265 44 36 chrX 125921642 125921828 -51052312 - MER5A DNA MER1_type -1 188 25 * 331 229 0 0 chrX 125921772 125921833 -51052307 + MER5A DNA MER1_type 111 171 -18 499 289 147 18 chrX 125923247 125923465 -51050675 + MIR SINE MIR 7 252 -10 228 182 0 0 chrX 125924084 125924128 -51050012 + (CATA)n Simple_repeat Simple_repeat 3 46 0 794 185 158 55 chrX 125924410 125924576 -51049564 + L1MA9 LINE L1 5950 6152 -160 270 81 0 0 chrX 125924576 125924613 -51049527 + (CA)n Simple_repeat Simple_repeat 1 37 0 794 185 158 55 chrX 125924613 125924700 -51049440 + L1MA9 LINE L1 6152 6229 -83 1844 113 10 17 chrX 125924722 125925013 -51049127 - MER7A DNA MER2_type -51 295 9 308 102 0 0 chrX 125925019 125925068 -51049072 + L1MA9 LINE L1 6226 6274 -38 2296 83 7 0 chrX 125925661 125925949 -51048191 - AluSc SINE Alu -19 290 1 586 296 136 5 chrX 125928177 125928383 -51045757 + MIR SINE MIR 15 247 -15 1156 177 21 7 chrX 125929136 125929448 -51044692 + MLT1A1 LTR MaLR 1 365 0 701 250 67 9 chrX 125931763 125931987 -51042153 - L1ME3A LINE L1 -7 6163 5927 7332 156 20 11 chrX 125932007 125932137 -51042003 - L1PB3 LINE L1 -4 6296 6169 1850 141 7 31 chrX 125932137 125932453 -51041687 + AluSx SINE Alu 1 309 0 7332 156 20 11 chrX 125932453 125932887 -51041253 - L1PB3 LINE L1 -131 6169 5740 200 35 35 0 chrX 125932887 125932916 -51041224 + (TA)n Simple_repeat Simple_repeat 1 30 0 7332 156 20 11 chrX 125932916 125933575 -51040565 - L1PB3 LINE L1 -560 5740 5088 210 37 0 0 chrX 125933575 125933602 -51040538 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 7332 156 20 11 chrX 125933602 125934957 -51039183 - L1PB3 LINE L1 -1212 5088 3748 917 160 20 140 chrX 125934957 125935151 -51038989 - L1MA7 LINE L1 -184 6107 5958 4293 157 46 2 chrX 125935151 125935959 -51038181 - L1MA4 LINE L1 0 6300 5458 917 160 20 140 chrX 125935959 125936057 -51038083 - L1MA7 LINE L1 -333 5958 5850 3197 127 55 2 chrX 125936066 125936634 -51037506 + L1MA7 LINE L1 5255 5852 -439 648 281 41 17 chrX 125936622 125936917 -51037223 - L1ME3A LINE L1 -208 5962 5661 * 1577 243 149 36 chrX 125937024 125937533 -51036607 + MLT1E LTR MaLR 1 574 -19 1630 200 141 46 chrX 125937533 125937994 -51036146 - MLT1D LTR MaLR 0 505 1 1577 243 149 36 chrX 125937994 125938014 -51036126 + MLT1E LTR MaLR 574 590 -3 1382 84 11 0 chrX 125938174 125938365 -51035775 - L1PB1 LINE L1 -1 6150 5958 9583 73 2 8 chrX 125938576 125940635 -51033505 + L1PA7 LINE L1 4094 6146 -8 2027 207 26 8 chrX 125940644 125941146 -51032994 + L1M4 LINE L1 2617 3127 -3019 434 238 11 10 chrX 125941166 125941291 -51032849 + L1MA10 LINE L1 5993 6275 -48 477 165 12 0 chrX 125941402 125941487 -51032653 - AluJ/FLAM SINE Alu -224 88 3 3416 215 40 25 chrX 125941971 125942018 -51032122 + MER63C DNA MER1_type 5 50 -1010 2263 26 0 0 chrX 125942018 125942286 -51031854 + L1PA2 LINE L1 5888 6155 0 3416 215 40 25 chrX 125942286 125943146 -51030994 + MER63C DNA MER1_type 50 925 -5 3502 143 58 47 chrX 125943668 125944472 -51029668 - L1MC3 LINE L1 -8 7777 6965 1346 224 0 4 chrX 125944474 125944755 -51029385 - MER82 DNA MER2_type -1 652 373 1543 133 93 17 chrX 125944755 125945055 -51029085 - L1MC3 LINE L1 -1207 6578 6256 372 226 69 82 chrX 125945423 125945537 -51028603 - MIR SINE MIR 0 262 149 2168 113 3 16 chrX 125945537 125945846 -51028294 - AluSx SINE Alu -7 305 1 372 226 69 82 chrX 125945846 125945890 -51028250 - MIR SINE MIR -113 149 106 813 181 0 0 chrX 125945953 125946086 -51028054 + FLAM_C SINE Alu 1 133 0 199 282 13 64 chrX 125946097 125946175 -51027965 - L2 LINE L2 -11 3261 3188 2038 162 115 0 chrX 125946267 125946649 -51027491 - MSTB LTR MaLR 0 426 1 770 271 29 14 chrX 125947328 125947538 -51026602 - MIR SINE MIR -38 224 12 192 266 138 43 chrX 125948833 125948927 -51025213 + L2 LINE L2 3165 3267 -46 1078 238 0 18 chrX 125949429 125949656 -51024484 - MER58A DNA MER1_type 0 224 2 833 250 9 19 chrX 125949942 125950154 -51023986 - MER63A DNA MER1_type 0 210 1 536 308 133 2 chrX 125951370 125951594 -51022546 - MIR SINE MIR 0 262 14 747 294 80 24 chrX 125952226 125952653 -51021487 - L2 LINE L2 -123 3190 2737 1991 111 33 69 chrX 125954836 125955225 -51018915 + THE1C LTR MaLR 1 375 0 2234 91 0 16 chrX 125956260 125956569 -51017571 - AluY SINE Alu -7 304 1 731 105 0 0 chrX 125956620 125956715 -51017425 + AluSg/x SINE Alu 129 223 -89 533 308 181 4 chrX 125957328 125957588 -51016552 + L3 LINE CR1 1271 1576 -1 3475 105 15 0 chrX 125958946 125959468 -51014672 + L1PA13 LINE L1 5629 6158 -5 1072 170 0 0 chrX 125959469 125959634 -51014506 + AluJ SINE Alu 134 298 -14 585 161 39 0 chrX 125959634 125959764 -51014376 + L1M1 LINE L1 5392 5526 -777 2881 138 26 4 chrX 125959766 125960258 -51013882 - L1MA4A LINE L1 -7 6296 5794 2242 144 28 17 chrX 125960258 125960618 -51013522 + THE1B LTR MaLR 1 364 0 7785 85 45 0 chrX 125960618 125961702 -51012438 + THE1B-int LTR MaLR 1 1133 -447 341 139 0 0 chrX 125961816 125961883 -51012257 + THE1A LTR MaLR 305 355 0 9416 169 33 10 chrX 125961883 125964467 -51009673 - L1MA4A LINE L1 -505 5798 3149 248 0 31 0 chrX 125964467 125964499 -51009641 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 9416 169 33 10 chrX 125964499 125964575 -51009565 - L1MA4A LINE L1 -3154 3149 3076 1860 231 75 16 chrX 125964703 125965344 -51008796 - L1M4 LINE L1 -953 5193 4515 1833 156 13 30 chrX 125965386 125965688 -51008452 + AluJo SINE Alu 1 297 -15 2276 171 33 42 chrX 125965749 125966292 -51007848 - L1MA8 LINE L1 -6 6285 5748 28 29 0 0 chrX 125966371 125966406 -51007734 + AT_rich Low_complexity Low_complexity 1 35 0 265 351 0 0 chrX 125966686 125966798 -51007342 - MIR SINE MIR -72 136 42 441 167 21 31 chrX 125966806 125966902 -51007238 - MLT1J1 LTR MaLR -336 110 16 459 289 59 32 chrX 125967059 125967246 -51006894 - MIR SINE MIR -37 225 34 302 311 13 53 chrX 125969487 125969638 -51004502 - MIR SINE MIR -97 165 21 23 0 0 0 chrX 125969646 125969669 -51004471 + AT_rich Low_complexity Low_complexity 1 23 0 335 380 54 35 chrX 125971047 125971452 -51002688 + L2 LINE L2 2548 2960 -354 363 245 235 0 chrX 125971576 125971674 -51002466 + MER5A DNA MER1_type 62 182 -7 7653 28 3 0 chrX 125972545 125973665 -51000475 - L1PA3 LINE L1 -5 6150 5030 15035 28 15 3 chrX 125973767 125975669 -50998471 - L1PA3 LINE L1 -1137 5009 3086 209 272 62 37 chrX 125976208 125976289 -50997851 + MER5A DNA MER1_type 28 110 -79 2550 59 6 0 chrX 125977326 125977647 -50996493 - L1PA7 LINE L1 -3 6151 5829 1931 70 0 0 chrX 125977648 125977904 -50996236 + L1P LINE L1 3935 4190 -1956 255 289 165 0 chrX 125978934 125979031 -50995109 + MIR SINE MIR 18 130 -78 483 276 94 13 chrX 125979088 125979296 -50994844 - MIR SINE MIR -6 256 38 264 290 0 0 chrX 125979307 125979369 -50994771 + MIR3 SINE MIR 144 205 -3 543 328 95 38 chrX 125980189 125980764 -50993376 + L2 LINE L2 2577 3179 -93 276 188 0 0 chrX 125980796 125980860 -50993280 + (TGAA)n Simple_repeat Simple_repeat 1 64 0 419 250 46 9 chrX 125982120 125982228 -50991912 - L2 LINE L2 -6 3307 3196 429 311 14 5 chrX 125982832 125983041 -50991099 - L1M4 LINE L1 -1206 4940 4730 361 296 96 27 chrX 125983181 125983586 -50990554 - L1M4 LINE L1 -1602 4544 4112 2037 148 58 3 chrX 125983674 125984019 -50990121 - THE1B LTR MaLR 0 364 1 4089 100 13 1 chrX 125984019 125984922 -50989218 - THE1B-int LTR MaLR 0 1580 566 1374 131 62 39 chrX 125984923 125985183 -50988957 - THE1B LTR MaLR -98 266 1 345 100 0 0 chrX 125985188 125985238 -50988902 + (CA)n Simple_repeat Simple_repeat 2 51 0 222 118 0 0 chrX 125985582 125985616 -50988524 + (GA)n Simple_repeat Simple_repeat 1 34 0 185 305 63 53 chrX 125986262 125986357 -50987783 - L2 LINE L2 -261 3011 2916 412 322 126 54 chrX 125986394 125987059 -50987081 - L2 LINE L2 -467 2847 2135 477 252 79 8 chrX 125987321 125987448 -50986692 - MIR3 SINE MIR -64 144 9 322 358 42 28 chrX 125988026 125988241 -50985899 + L2 LINE L2 2866 3083 -189 325 346 8 54 chrX 125988372 125988502 -50985638 - L2 LINE L2 -33 3239 3116 2063 136 147 5 chrX 125988588 125988963 -50985177 - MSTA LTR MaLR 0 428 1 4779 176 102 2 chrX 125988963 125989924 -50984216 - MSTA-int LTR MaLR 0 1651 595 2089 152 131 16 chrX 125989925 125990306 -50983834 - MSTA LTR MaLR -3 425 1 566 310 36 115 chrX 125990395 125991517 -50982623 - L2 LINE L2 -458 2856 1824 633 241 6 13 chrX 125991525 125991683 -50982457 + L1MEc LINE L1 37 193 -6203 529 224 127 0 chrX 125991682 125991847 -50982293 + L1MEc LINE L1 2592 2777 -3438 * 389 225 18 0 chrX 125991837 125991948 -50982192 + L1ME1 LINE L1 86 198 -6198 * 3816 234 71 22 chrX 125991947 125993376 -50980764 + L1ME1 LINE L1 2592 4091 -2124 326 228 38 0 chrX 125993366 125993445 -50980695 + L1ME1 LINE L1 5890 5971 -262 * 4454 144 53 19 chrX 125993456 125993969 -50980171 + L1MA9 LINE L1 5276 5831 -481 282 29 0 0 chrX 125993969 125994004 -50980136 + (TG)n Simple_repeat Simple_repeat 2 36 0 4454 144 53 19 chrX 125994004 125994362 -50979778 + L1MA9 LINE L1 5831 6176 -136 487 169 0 0 chrX 125994364 125994447 -50979693 + L1MA9 LINE L1 6221 6303 -9 806 223 59 23 chrX 125994594 125994814 -50979326 + L1ME1 LINE L1 6003 6230 -5 580 29 0 0 chrX 125995005 125995074 -50979066 - L1PA5 LINE L1 -1 6153 6085 283 22 0 43 chrX 125997055 125997101 -50977039 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1639 178 88 35 chrX 125997101 125997466 -50976674 - MSTD LTR MaLR -8 388 1 243 152 0 0 chrX 125997740 125997786 -50976354 + (ATG)n Simple_repeat Simple_repeat 2 47 0 450 0 0 0 chrX 125998881 125998931 -50975209 + (CA)n Simple_repeat Simple_repeat 1 50 0 209 243 29 126 chrX 125999427 125999530 -50974610 + MIR SINE MIR 1 93 -169 279 274 36 0 chrX 126001171 126001255 -50972885 - MIR SINE MIR -56 206 120 873 206 36 109 chrX 126002266 126002542 -50971598 + MIR SINE MIR 7 262 0 222 279 173 39 chrX 126002622 126002726 -50971414 - L3 LINE CR1 -33 1544 1427 608 219 91 52 chrX 126002827 126002988 -50971152 + MIR SINE MIR 1 173 -89 1633 212 36 41 chrX 126002988 126003380 -50970760 + MLT1B LTR MaLR 1 390 0 608 219 91 52 chrX 126003380 126003428 -50970712 + MIR SINE MIR 173 218 -44 218 277 11 75 chrX 126003461 126003555 -50970585 - L3 LINE CR1 -251 1326 1239 301 283 117 0 chrX 126003627 126003747 -50970393 + L2 LINE L2 3180 3313 0 270 172 11 35 chrX 126004449 126004536 -50969604 + GA-rich Low_complexity Low_complexity 4 88 0 546 266 87 53 chrX 126004730 126004889 -50969251 - MIR SINE MIR 0 262 93 2054 115 47 59 chrX 126004889 126005228 -50968912 - MER1B DNA MER1_type 0 337 3 546 266 87 53 chrX 126005228 126005275 -50968865 - MIR SINE MIR -169 93 49 1563 235 91 32 chrX 126007605 126008069 -50966071 + MLT2B1 LTR ERVL 1 491 -29 344 264 23 0 chrX 126008205 126008292 -50965848 + L1MC4 LINE L1 6614 6702 -1340 285 180 66 0 chrX 126008293 126008354 -50965786 + L1P5 LINE L1 5728 5792 -359 212 100 25 0 chrX 126008358 126008398 -50965742 + (TA)n Simple_repeat Simple_repeat 1 41 0 356 239 0 22 chrX 126008399 126008491 -50965649 - L1MC4 LINE L1 -1339 6703 6614 411 21 0 0 chrX 126008491 126008539 -50965601 + (CA)n Simple_repeat Simple_repeat 2 49 0 2719 82 11 8 chrX 126008539 126008894 -50965246 + L1PB1 LINE L1 5791 6146 -5 6389 100 19 36 chrX 126008905 126009734 -50964406 + L1MA2 LINE L1 5318 6129 -175 2205 112 0 7 chrX 126009734 126010028 -50964112 + AluSx SINE Alu 1 292 -20 6389 100 19 36 chrX 126010028 126010202 -50963938 + L1MA2 LINE L1 6129 6304 0 2100 117 3 23 chrX 126012466 126012766 -50961374 + AluSx SINE Alu 1 294 -18 194 116 23 0 chrX 126012766 126012809 -50961331 + (TA)n Simple_repeat Simple_repeat 1 44 0 22 80 0 0 chrX 126013630 126013680 -50960460 + AT_rich Low_complexity Low_complexity 1 50 0 18032 50 2 14 chrX 126013888 126016154 -50957986 - L1P LINE L1 -3786 2360 122 272 282 86 34 chrX 126016171 126016288 -50957852 - L2 LINE L2 -226 3046 2924 262 318 32 63 chrX 126016913 126017039 -50957101 - L2 LINE L2 -14 3258 3137 660 167 0 0 chrX 126018907 126019009 -50955131 - MLT1A1 LTR MaLR -263 102 1 377 341 50 17 chrX 126019027 126019206 -50954934 + MIR SINE MIR 78 262 0 258 355 16 48 chrX 126019302 126019426 -50954714 + L2 LINE L2 3132 3251 -21 2110 122 0 13 chrX 126019566 126019878 -50954262 - AluSx SINE Alu 0 312 5 486 0 0 0 chrX 126020315 126020369 -50953771 + (CA)n Simple_repeat Simple_repeat 2 55 0 360 18 246 0 chrX 126020571 126020628 -50953512 + MER63A DNA MER1_type 3 73 0 188 163 23 0 chrX 126020642 126020685 -50953455 + CT-rich Low_complexity Low_complexity 1 44 0 3609 138 20 2 chrX 126020958 126021560 -50952580 + L1 LINE L1 4124 4736 -1410 * 6788 131 33 3 chrX 126021555 126022636 -50951504 - L1MC1 LINE L1 -3 6330 5219 21 0 0 0 chrX 126022640 126022661 -50951479 + AT_rich Low_complexity Low_complexity 1 21 0 5292 137 6 53 chrX 126023782 126024660 -50949480 - L1MB1 LINE L1 0 6168 5337 2284 96 17 0 chrX 126024660 126024962 -50949178 - AluSx SINE Alu -5 307 1 5292 137 6 53 chrX 126024962 126025041 -50949099 - L1MB1 LINE L1 -831 5337 5256 555 246 0 56 chrX 126025041 126025183 -50948957 + MER63A DNA MER1_type 77 210 0 15609 192 29 5 chrX 126025530 126029160 -50944980 - L1 LINE L1 -3115 3733 15 1609 193 3 14 chrX 126029160 126029456 -50944684 - AluJb SINE Alu -19 293 1 4946 105 61 7 chrX 126029480 126030223 -50943917 + L1MA4A LINE L1 5515 6297 -6 525 206 41 0 chrX 126030224 126030321 -50943819 + L2 LINE L2 3201 3301 -12 531 279 0 48 chrX 126030338 126030503 -50943637 + MIR3 SINE MIR 49 205 -3 343 309 26 13 chrX 126030577 126030729 -50943411 - L2 LINE L2 -6 3307 3154 437 246 0 0 chrX 126030785 126030899 -50943241 - MIR SINE MIR -2 260 147 183 401 45 30 chrX 126030997 126031351 -50942789 - L2 LINE L2 -231 3041 2684 2493 123 33 8 chrX 126031493 126031859 -50942281 + THE1C LTR MaLR 1 375 0 1084 271 141 30 chrX 126032249 126032718 -50941422 + LTR33 LTR ERVL 1 521 0 993 253 23 23 chrX 126032759 126033020 -50941120 + MIR SINE MIR 2 262 0 1151 117 0 0 chrX 126033711 126033874 -50940266 + L1M1 LINE L1 5538 5700 -603 1639 248 65 32 chrX 126034992 126035467 -50938673 - LTR16C LTR ERVL 0 491 1 338 219 8 126 chrX 126035633 126035752 -50938388 + L2 LINE L2 3168 3272 0 21 0 0 0 chrX 126036751 126036772 -50937368 + AT_rich Low_complexity Low_complexity 1 21 0 290 154 10 115 chrX 126037152 126037235 -50936905 + MER5A DNA MER1_type 4 75 -114 6000 41 4 2 chrX 126037235 126038371 -50935769 + L1P2 LINE L1 4640 5776 -378 1071 180 73 10 chrX 126040964 126041170 -50932970 + MER20 DNA MER1_type 1 219 0 937 192 26 47 chrX 126041178 126041242 -50932898 - MER5A DNA MER1_type 0 189 125 2145 99 23 3 chrX 126041242 126041546 -50932594 + AluSg SINE Alu 1 310 0 937 192 26 47 chrX 126041546 126041674 -50932466 - MER5A DNA MER1_type -64 125 1 198 0 0 0 chrX 126043719 126043741 -50930399 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 450 36 0 0 chrX 126043740 126043796 -50930344 + (GA)n Simple_repeat Simple_repeat 1 56 0 2474 102 51 23 chrX 126044113 126044467 -50929673 - THE1B LTR MaLR 0 364 1 2130 168 55 25 chrX 126244644 126245121 -50729019 - L1MB7 LINE L1 -253 5931 5441 346 333 8 8 chrX 126245397 126245523 -50728617 + G-rich Low_complexity Low_complexity 2 127 0 2018 121 11 4 chrX 126245977 126246278 -50727862 + AluSx SINE Alu 1 303 0 569 260 20 13 chrX 126246388 126246538 -50727602 - MER63A DNA MER1_type -7 203 53 2528 87 0 0 chrX 126248058 126248367 -50725773 - AluY SINE Alu -2 309 1 2155 115 10 0 chrX 126248369 126248657 -50725483 - AluSx SINE Alu -21 291 1 467 307 118 18 chrX 126248668 126248896 -50725244 - L1ME4a LINE L1 -12 6109 5859 318 273 131 61 chrX 126249371 126249569 -50724571 - MIR SINE MIR -43 219 8 1877 132 36 30 chrX 126250223 126250527 -50723613 - AluSg SINE Alu -2 308 3 401 220 105 68 chrX 126250761 126251056 -50723084 - HAL1 LINE L1 -125 2382 2077 2462 70 7 3 chrX 126251149 126251449 -50722691 - AluY SINE Alu -10 301 1 1822 153 10 20 chrX 126251452 126251753 -50722387 - AluSx SINE Alu -10 302 5 899 105 19 56 chrX 126251771 126251933 -50722207 - AluSg/x SINE Alu -20 290 135 24 32 0 0 chrX 126251987 126252018 -50722122 + AT_rich Low_complexity Low_complexity 1 31 0 230 307 158 0 chrX 126252066 126252193 -50721947 - HAL1 LINE L1 -701 1806 1660 820 236 11 6 chrX 126252210 126252384 -50721756 - AluJb SINE Alu -4 308 134 1769 163 13 16 chrX 126252388 126252695 -50721445 - AluSx SINE Alu -6 306 1 366 249 50 30 chrX 126252711 126252912 -50721228 - HAL1 LINE L1 -1089 1418 1214 822 0 0 0 chrX 126252928 126253018 -50721122 + AluY SINE Alu 1 90 -220 210 143 0 0 chrX 126253323 126253358 -50720782 + (TCC)n Simple_repeat Simple_repeat 3 37 0 253 373 64 0 chrX 126254629 126254739 -50719401 - MIR SINE MIR -68 140 24 2346 87 0 0 chrX 126255040 126255338 -50718802 - AluSg SINE Alu -12 298 1 380 213 0 0 chrX 126255380 126255455 -50718685 - U3 snRNA snRNA -142 75 1 1647 147 68 37 chrX 126255529 126255910 -50718230 - L1MA7 LINE L1 0 6291 5899 1113 185 73 3 chrX 126255918 126256220 -50717920 + Charlie1 DNA MER1_type 2439 2761 0 507 332 60 15 chrX 126256353 126256552 -50717588 - MIR SINE MIR -33 229 22 420 248 79 106 chrX 126257822 126258076 -50716064 - MLT1K LTR MaLR -30 558 312 2402 110 0 0 chrX 126258081 126258414 -50715726 - AluSg SINE Alu 0 333 1 4345 137 25 4 chrX 126258426 126259151 -50714989 - L1MB7 LINE L1 -9 6175 5436 788 178 98 0 chrX 126259786 126259949 -50714191 + MER3 DNA MER1_type 31 209 0 2414 95 0 0 chrX 126260548 126260843 -50713297 - AluSx SINE Alu -17 295 1 2616 54 0 0 chrX 126260853 126261150 -50712990 - AluY SINE Alu -14 297 1 329 314 22 22 chrX 126261537 126261674 -50712466 - L2 LINE L2 -925 2389 2253 826 130 0 43 chrX 126261817 126261955 -50712185 + FLAM_C SINE Alu 1 132 -1 362 280 38 53 chrX 126261973 126262002 -50712138 + L1ME4a LINE L1 5978 6006 -115 2314 112 3 0 chrX 126262002 126262305 -50711835 - AluSx SINE Alu -8 304 1 362 280 38 53 chrX 126262305 126262407 -50711733 + L1ME4a LINE L1 6006 6107 -14 436 327 40 20 chrX 126262465 126262645 -50711495 - L2 LINE L2 -1316 1998 1815 1041 249 32 32 chrX 126262645 126262681 -50711459 + MIR SINE MIR 2 37 -225 928 181 9 81 chrX 126262681 126262870 -50711270 - MER3 DNA MER1_type -4 205 33 2269 111 7 0 chrX 126262870 126263168 -50710972 - AluSq SINE Alu -13 300 1 928 181 9 81 chrX 126263168 126263199 -50710941 - MER3 DNA MER1_type -176 33 1 1041 249 32 32 chrX 126263199 126263415 -50710725 + MIR SINE MIR 36 254 -8 319 229 93 36 chrX 126263417 126263557 -50710583 + L1ME3A LINE L1 6017 6164 -6 2289 100 10 3 chrX 126263608 126263919 -50710221 - AluSp SINE Alu 0 313 1 1792 128 6 64 chrX 126263919 126264050 -50710090 + AluJb SINE Alu 14 151 -161 2237 106 3 0 chrX 126264050 126264332 -50709808 + AluSq SINE Alu 1 283 -30 405 0 0 0 chrX 126264337 126264382 -50709758 + (CA)n Simple_repeat Simple_repeat 2 46 0 1792 128 6 64 chrX 126264382 126264557 -50709583 + AluJb SINE Alu 155 308 -4 2172 134 0 0 chrX 126264749 126265056 -50709084 + AluSq SINE Alu 1 307 -6 396 250 50 115 chrX 126265610 126265715 -50708425 - MIR3 SINE MIR -6 202 115 2238 106 0 7 chrX 126265715 126266016 -50708124 + AluSx SINE Alu 3 301 -11 396 250 50 115 chrX 126266016 126266110 -50708030 - MIR3 SINE MIR -93 115 16 210 244 0 0 chrX 126266682 126266727 -50707413 + L2 LINE L2 3262 3306 -7 228 67 0 0 chrX 126268659 126268689 -50705451 + (CCCCCA)n Simple_repeat Simple_repeat 6 35 0 334 364 25 0 chrX 126269228 126269349 -50704791 + L2 LINE L2 3139 3262 -10 651 108 0 0 chrX 126269349 126269451 -50704689 + (TGGA)n Simple_repeat Simple_repeat 4 105 0 197 326 21 32 chrX 126272134 126272229 -50701911 + MIR SINE MIR 59 152 -56 275 313 48 0 chrX 126272946 126273029 -50701111 + MIR SINE MIR 120 206 -56 2259 83 45 0 chrX 126273053 126273342 -50700798 - AluSx SINE Alu -10 302 1 952 92 0 8 chrX 126273701 126273831 -50700309 + AluSp/q SINE Alu 182 310 -3 2294 99 0 3 chrX 126274005 126274298 -50699842 + AluSx SINE Alu 2 293 -19 2223 114 0 22 chrX 126274795 126275112 -50699028 + AluJb SINE Alu 1 310 -2 460 272 130 18 chrX 126275128 126275297 -50698843 - MIR3 SINE MIR -7 201 14 1326 167 0 14 chrX 126275391 126275606 -50698534 + AluSx SINE Alu 1 212 -100 506 33 0 0 chrX 126275606 126275666 -50698474 + AluSq/x SINE Alu 78 137 -175 2359 109 0 3 chrX 126275666 126275977 -50698163 + AluSg SINE Alu 1 310 0 346 313 30 8 chrX 126276046 126276180 -50697960 + L2 LINE L2 2922 3058 -214 637 207 37 7 chrX 126276243 126276378 -50697762 + MER58 DNA MER1_type 1 139 -2281 1439 156 0 5 chrX 126276399 126276611 -50697529 - AluJb SINE Alu -24 288 78 21 0 0 31 chrX 126276700 126276719 -50697421 + AT_rich Low_complexity Low_complexity 1 20 -11 2348 83 3 3 chrX 126276719 126277009 -50697131 + AluSq SINE Alu 1 290 -23 21 0 0 31 chrX 126277009 126277021 -50697119 + AT_rich Low_complexity Low_complexity 20 31 0 870 126 0 0 chrX 126277031 126277158 -50696982 - FLAM_C SINE Alu -2 131 5 557 205 149 19 chrX 126277249 126277410 -50696730 + MIR3 SINE MIR 4 185 -23 1036 186 68 55 chrX 126278426 126278605 -50695535 + MER8 DNA MER2_type 1 185 -54 1760 123 72 45 chrX 126278605 126278897 -50695243 + AluSx SINE Alu 1 300 -12 1036 186 68 55 chrX 126278897 126278953 -50695187 + MER8 DNA MER2_type 185 239 0 2290 84 3 17 chrX 126279524 126279659 -50694481 + AluSx SINE Alu 1 136 -176 2125 83 7 63 chrX 126279659 126279991 -50694149 + AluSx SINE Alu 1 315 0 2290 84 3 17 chrX 126279991 126280153 -50693987 + AluSx SINE Alu 136 295 -17 247 126 0 0 chrX 126280791 126280830 -50693310 - MIR SINE MIR -125 83 45 246 253 32 120 chrX 126280904 126281062 -50693078 - MIR3 SINE MIR -64 144 1 754 131 34 117 chrX 126281673 126281749 -50692391 + L1MB7 LINE L1 5979 6060 -124 2019 141 0 3 chrX 126281749 126282058 -50692082 - AluSx SINE Alu 0 308 1 754 131 34 117 chrX 126282058 126282186 -50691954 + L1MB7 LINE L1 6060 6167 -17 418 301 91 28 chrX 126282427 126282570 -50691570 + MIR3 SINE MIR 51 202 -6 824 157 8 15 chrX 126282589 126282723 -50691417 + FLAM_C SINE Alu 1 133 0 2370 100 10 0 chrX 126282730 126283039 -50691101 + AluSx SINE Alu 1 312 0 208 288 0 61 chrX 126284693 126284759 -50689381 + MIR SINE MIR 63 124 -84 2451 99 0 0 chrX 126284866 126285179 -50688961 + AluSq SINE Alu 1 313 0 2021 122 14 0 chrX 126285217 126285503 -50688637 - AluSx SINE Alu -14 298 9 212 333 0 14 chrX 126285772 126285841 -50688299 + MIR SINE MIR 16 83 -125 2238 62 7 28 chrX 126287085 126287420 -50686720 + AluSp SINE Alu 1 329 0 2088 124 0 33 chrX 126287429 126287735 -50686405 + AluSx SINE Alu 1 296 -16 706 250 57 24 chrX 126287804 126288094 -50686046 + L1ME LINE L1 4627 4948 -1198 1776 182 23 10 chrX 126288106 126288414 -50685726 + AluJo SINE Alu 1 312 0 557 203 0 8 chrX 126288428 126288556 -50685584 + GA-rich Low_complexity Low_complexity 1 127 0 1695 191 19 31 chrX 126288558 126289103 -50685037 + L1ME LINE L1 4942 5476 -690 378 0 0 0 chrX 126289852 126289894 -50684246 + (CA)n Simple_repeat Simple_repeat 2 43 0 558 179 179 89 chrX 126290101 126290280 -50683860 - MIR SINE MIR 0 262 68 2269 102 0 35 chrX 126290451 126290764 -50683376 + AluSx SINE Alu 1 302 -10 182 281 98 61 chrX 126290842 126291006 -50683134 + L2 LINE L2 2927 3096 -176 423 0 0 0 chrX 126291429 126291476 -50682664 + (TG)n Simple_repeat Simple_repeat 2 48 0 266 203 34 34 chrX 126291941 126292000 -50682140 + L2 LINE L2 3206 3264 -8 2014 123 0 7 chrX 126292568 126292882 -50681258 + AluSx SINE Alu 1 312 0 663 242 132 37 chrX 126293300 126293490 -50680650 - MIR SINE MIR -21 241 34 2430 74 7 0 chrX 126293502 126293799 -50680341 + AluSp SINE Alu 1 299 -14 591 176 0 0 chrX 126293808 126293910 -50680230 + FRAM SINE Alu 72 173 -3 248 191 11 56 chrX 126296097 126296186 -50677954 + C-rich Low_complexity Low_complexity 1 85 0 231 232 32 32 chrX 126296319 126296414 -50677726 + (CGGGG)n Simple_repeat Simple_repeat 1 95 0 206 158 21 32 chrX 126296511 126296606 -50677534 + GA-rich Low_complexity Low_complexity 3 96 0 24 32 0 0 chrX 126296627 126296658 -50677482 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 126296772 126296794 -50677346 + GC_rich Low_complexity Low_complexity 1 22 0 620 206 35 184 chrX 126298014 126298159 -50675981 + MIR SINE MIR 17 182 -80 2337 108 3 0 chrX 126298159 126298464 -50675676 + AluSx SINE Alu 1 306 -6 620 206 35 184 chrX 126298464 126298482 -50675658 + MIR SINE MIR 182 201 -61 1726 89 11 126 chrX 126298482 126298638 -50675502 - L1MA3 LINE L1 0 6305 6133 2546 60 0 19 chrX 126298638 126298955 -50675185 - AluY SINE Alu 0 311 1 1726 89 11 126 chrX 126298955 126299002 -50675138 - L1MA3 LINE L1 -172 6133 6082 2508 78 0 0 chrX 126299002 126299298 -50674842 - AluSp SINE Alu -17 296 1 1726 89 11 126 chrX 126299298 126299441 -50674699 - L1MA3 LINE L1 -223 6082 5998 620 206 35 184 chrX 126299441 126299558 -50674582 + MIR SINE MIR 201 256 -6 1950 175 0 7 chrX 126300369 126300678 -50673462 - AluJo SINE Alu -5 307 1 2152 130 13 0 chrX 126300905 126301213 -50672927 + AluSx SINE Alu 1 312 0 477 99 22 22 chrX 126301220 126301311 -50672829 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 1343 75 0 75 chrX 126301674 126301861 -50672279 - AluSq SINE Alu -7 306 134 2323 118 0 0 chrX 126301861 126302166 -50671974 - AluSg SINE Alu -5 305 1 2524 62 0 10 chrX 126302506 126302812 -50671328 + AluY SINE Alu 1 303 -8 287 315 12 12 chrX 126304261 126304426 -50669714 + (TG)n Simple_repeat Simple_repeat 1 165 0 234 116 0 0 chrX 126305782 126305825 -50668315 + (T)n Simple_repeat Simple_repeat 1 43 0 2080 84 18 21 chrX 126306812 126307098 -50667042 - AluSx SINE Alu 0 312 28 488 234 114 30 chrX 126308745 126308912 -50665228 - MIR3 SINE MIR -12 196 16 2216 89 16 32 chrX 126308988 126309301 -50664839 + AluSx SINE Alu 1 308 -4 836 136 0 0 chrX 126309527 126309645 -50664495 + FLAM_C SINE Alu 1 118 -15 373 319 56 35 chrX 126309762 126309906 -50664234 + L2 LINE L2 3126 3272 0 2786 180 54 30 chrX 126310207 126310801 -50663339 - MER90 LTR ERV1 0 614 7 213 271 0 0 chrX 126311191 126311239 -50662901 + G-rich Low_complexity Low_complexity 1 48 0 2465 79 3 3 chrX 126311791 126312094 -50662046 + AluSx SINE Alu 10 312 0 263 351 78 7 chrX 126312499 126312609 -50661531 - L2 LINE L2 -247 3025 2900 267 31 0 0 chrX 126312609 126312641 -50661499 + (TG)n Simple_repeat Simple_repeat 2 33 0 263 351 78 7 chrX 126312641 126312684 -50661456 - L2 LINE L2 -372 2900 2861 2311 111 0 0 chrX 126313258 126313556 -50660584 - AluSx SINE Alu -8 304 7 2287 104 3 0 chrX 126313863 126314161 -50659979 + AluSp SINE Alu 1 299 -14 409 290 21 48 chrX 126314508 126314653 -50659487 - L2 LINE L2 -1 3312 3172 1049 195 19 5 chrX 126316090 126316295 -50657845 - MER3 DNA MER1_type 0 209 2 2284 95 10 3 chrX 126317450 126317744 -50656396 - AluSq SINE Alu -17 296 1 24 53 0 0 chrX 126318121 126318159 -50655981 + AT_rich Low_complexity Low_complexity 1 38 0 773 146 0 0 chrX 126318160 126318270 -50655870 - FLAM_C SINE Alu -28 115 6 2220 69 0 0 chrX 126318315 126318575 -50655565 - AluSg SINE Alu -8 302 43 1949 153 3 13 chrX 126319203 126319504 -50654636 - AluJb SINE Alu -14 298 1 2107 111 17 3 chrX 126319533 126319830 -50654310 + AluSg SINE Alu 1 301 -9 409 263 54 133 chrX 126320030 126320308 -50653832 - L2 LINE L2 0 3272 3017 342 249 189 27 chrX 126320351 126320655 -50653485 + L1ME4a LINE L1 5734 6098 -23 2176 112 0 23 chrX 126320655 126320959 -50653181 - AluSx SINE Alu -15 297 1 342 249 189 27 chrX 126320959 126320988 -50653152 + L1ME4a LINE L1 6098 6121 0 28 0 0 0 chrX 126321001 126321029 -50653111 + AT_rich Low_complexity Low_complexity 1 28 0 2427 93 3 0 chrX 126323353 126323653 -50650487 + AluSp SINE Alu 1 301 -12 2539 66 0 0 chrX 126323756 126324058 -50650082 + AluY SINE Alu 1 302 -9 1025 157 60 46 chrX 126324457 126324673 -50649467 + MER20 DNA MER1_type 1 219 0 1513 97 14 42 chrX 126324701 126324918 -50649222 + AluSg/x SINE Alu 84 294 -16 383 310 0 0 chrX 126325191 126325291 -50648849 - MIR SINE MIR -76 132 33 814 102 36 22 chrX 126326241 126326378 -50647762 - L1MB7 LINE L1 -10 6174 6036 2268 118 3 0 chrX 126326407 126326711 -50647429 + AluSx SINE Alu 1 305 -7 227 29 57 0 chrX 126326721 126326756 -50647384 + (CAAAAA)n Simple_repeat Simple_repeat 6 42 0 484 295 126 75 chrX 126327008 126327381 -50646759 + L2 LINE L2 289 680 -2634 215 329 0 14 chrX 126327564 126327634 -50646506 + MIR SINE MIR 15 83 -179 232 296 84 0 chrX 126327806 126327877 -50646263 - L2 LINE L2 -199 3073 2997 250 274 24 89 chrX 126327911 126328035 -50646105 + L2 LINE L2 1331 1446 -1868 2000 117 0 0 chrX 126328216 126328482 -50645658 - AluSx SINE Alu -10 302 37 1178 344 60 20 chrX 126328493 126329129 -50645011 + L2 LINE L2 1914 2574 -740 2077 107 35 21 chrX 126329141 126329430 -50644710 + AluSx SINE Alu 1 293 -19 680 259 25 66 chrX 126329496 126329739 -50644401 + MIR SINE MIR 30 262 0 590 315 108 55 chrX 126329747 126330359 -50643781 + L2 LINE L2 2553 3190 -82 279 328 24 16 chrX 126330386 126330511 -50643629 + L2 LINE L2 1457 1582 -1732 1187 174 18 18 chrX 126331315 126331534 -50642606 + MER20 DNA MER1_type 1 219 0 28 29 0 0 chrX 126331693 126331728 -50642412 + AT_rich Low_complexity Low_complexity 1 35 0 1730 167 0 20 chrX 126331728 126332022 -50642118 + AluJo SINE Alu 1 288 -24 375 23 0 0 chrX 126332024 126332068 -50642072 + (TG)n Simple_repeat Simple_repeat 1 44 0 2232 111 0 16 chrX 126332452 126332759 -50641381 + AluSc SINE Alu 1 302 -7 2437 91 3 0 chrX 126334124 126334432 -50639708 + AluSq SINE Alu 1 309 -4 2210 120 0 0 chrX 126334495 126334794 -50639346 - AluSx SINE Alu -13 299 1 2890 13 0 0 chrX 126335899 126336207 -50637933 - AluYa5 SINE Alu -3 308 1 8781 149 5 8 chrX 126336374 126338432 -50635708 - L1PA13 LINE L1 -141 6673 4621 2431 85 0 0 chrX 126338432 126338725 -50635415 - AluSc SINE Alu -16 293 1 8781 149 5 8 chrX 126338725 126339013 -50635127 - L1PA13 LINE L1 -2193 4621 4334 2100 154 0 0 chrX 126339021 126339333 -50634807 - AluSx SINE Alu 0 312 1 757 154 0 139 chrX 126339349 126339550 -50634590 - AluSg/x SINE Alu -3 307 135 398 251 180 59 chrX 126339585 126339840 -50634300 - HAL1 LINE L1 -562 1945 1660 827 229 6 11 chrX 126339857 126340032 -50634108 - AluJb SINE Alu -5 307 134 1655 161 18 18 chrX 126340040 126340351 -50633789 - AluSx SINE Alu 0 312 2 2671 194 65 3 chrX 126340351 126341000 -50633140 - L1PA13 LINE L1 -2447 4350 3662 * 11798 167 43 3 chrX 126340998 126343053 -50631087 - L1PA13 LINE L1 -4650 2137 1 470 271 53 27 chrX 126343050 126343238 -50630902 - HAL1 LINE L1 -1565 942 750 * 240 276 58 35 chrX 126343295 126343382 -50630758 - HAL1 LINE L1 -1951 556 468 346 124 0 0 chrX 126343693 126343749 -50630391 + AluSp SINE Alu 153 197 -106 2048 103 53 0 chrX 126343757 126344038 -50630102 + AluSq SINE Alu 1 296 -17 1939 128 4 7 chrX 126345099 126345380 -50628760 + AluSx SINE Alu 22 301 -11 2618 61 0 3 chrX 126346357 126346669 -50627471 - AluY SINE Alu 0 311 1 28 29 0 0 chrX 126347271 126347306 -50626834 + AT_rich Low_complexity Low_complexity 1 35 0 1893 144 3 10 chrX 126347680 126347979 -50626161 + AluJo SINE Alu 1 297 -15 852 176 0 22 chrX 126348187 126348323 -50625817 + AluJo/FLAM SINE Alu 1 133 -169 2103 136 3 7 chrX 126348323 126348631 -50625509 + AluSx SINE Alu 1 307 -5 707 236 80 66 chrX 126348801 126348893 -50625247 - MIR SINE MIR -1 261 172 2154 114 3 25 chrX 126348893 126349210 -50624930 - AluSx SINE Alu -2 310 1 707 236 80 66 chrX 126349210 126349329 -50624811 - MIR SINE MIR -90 172 47 1877 138 7 17 chrX 126349388 126349685 -50624455 - AluJo SINE Alu -18 294 1 327 239 152 0 chrX 126349732 126349824 -50624316 + Charlie1a DNA MER1_type 24 129 -1326 274 196 0 0 chrX 126349826 126349872 -50624268 - MER5B DNA MER1_type -130 48 3 23 0 0 0 chrX 126349912 126349935 -50624205 + AT_rich Low_complexity Low_complexity 1 23 0 326 343 68 30 chrX 126350038 126350274 -50623866 + MIR SINE MIR 18 262 0 234 283 106 24 chrX 126350269 126350379 -50623761 - MIR SINE MIR -73 135 29 * 21 36 0 0 chrX 126350604 126350632 -50623508 + AT_rich Low_complexity Low_complexity 1 28 0 552 177 147 82 chrX 126350972 126351204 -50622936 - L1ME LINE L1 -330 5791 5545 474 150 36 18 chrX 126351228 126351338 -50622802 - L1MD3 LINE L1 0 8041 7904 228 250 0 0 chrX 126352707 126352755 -50621385 + MIR SINE MIR 84 131 -131 22 0 0 0 chrX 126354071 126354093 -50620047 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 126354716 126354744 -50619396 + AT_rich Low_complexity Low_complexity 1 28 0 2417 133 97 15 chrX 126355163 126355575 -50618565 + L1MA4A LINE L1 5847 6292 -11 2042 140 3 3 chrX 126355624 126355932 -50618208 - AluSx SINE Alu -4 308 1 301 296 0 11 chrX 126356888 126356976 -50617164 - L1 LINE L1 -3793 2353 2267 604 188 58 0 chrX 126357305 126357443 -50616697 - L1MA10 LINE L1 -1 6333 6188 2264 86 10 20 chrX 126357569 126357870 -50616270 - AluSp SINE Alu -15 298 1 4459 172 24 31 chrX 126357875 126358767 -50615373 - L1MB1 LINE L1 -70 6119 5232 2389 81 0 7 chrX 126359164 126359460 -50614680 - AluSg SINE Alu -16 294 1 4426 108 16 23 chrX 126359467 126360112 -50614028 - L1PA16 LINE L1 -3 6163 5524 24 0 0 0 chrX 126360160 126360184 -50613956 + AT_rich Low_complexity Low_complexity 1 24 0 1107 167 0 28 chrX 126362508 126362688 -50611452 + FAM SINE Alu 1 175 0 585 115 0 0 chrX 126362731 126362809 -50611331 + AluS SINE Alu 2 79 -234 661 81 0 0 chrX 126363091 126363177 -50610963 + Alu SINE Alu 223 308 -1 2370 97 0 0 chrX 126363310 126363609 -50610531 - AluSg SINE Alu -11 299 1 1935 148 7 0 chrX 126363929 126364234 -50609906 + AluSx SINE Alu 1 307 -5 328 108 62 0 chrX 126364255 126364320 -50609820 + A-rich Low_complexity Low_complexity 3 71 0 694 185 109 50 chrX 126364974 126365212 -50608928 - MER112 DNA MER1_type 0 256 5 2310 56 0 65 chrX 126365221 126365545 -50608595 + AluY SINE Alu 1 303 -8 1522 175 38 102 chrX 126365692 126366092 -50608048 + MLT1A2 LTR MaLR 1 374 0 1611 182 55 48 chrX 126369619 126369855 -50604285 - MER58B DNA MER1_type -2086 334 101 2347 57 47 14 chrX 126369855 126370151 -50603989 + AluSc SINE Alu 1 306 -3 2379 99 0 3 chrX 126370151 126370463 -50603677 + AluSp SINE Alu 1 311 -2 1611 182 55 48 chrX 126370463 126370555 -50603585 - MER58B DNA MER1_type -2318 102 3 913 179 67 11 chrX 126370564 126370709 -50603431 - MER5A DNA MER1_type 0 189 31 186 43 0 0 chrX 126370709 126370732 -50603408 + (CTG)n Simple_repeat Simple_repeat 1 23 0 913 179 67 11 chrX 126370732 126370765 -50603375 - MER5A DNA MER1_type -158 31 1 1283 70 0 64 chrX 126370772 126370959 -50603181 + MER30 DNA MER1_type 1 175 -55 714 249 131 34 chrX 126371148 126371445 -50602695 - MER46C DNA MER2_type -11 327 2 22 70 0 0 chrX 126371763 126371806 -50602334 + AT_rich Low_complexity Low_complexity 1 43 0 1440 115 5 5 chrX 126371999 126372208 -50601932 - AluJb SINE Alu -19 293 85 238 161 0 71 chrX 126372641 126372697 -50601443 + L2 LINE L2 3261 3312 -1 819 177 0 8 chrX 126372762 126372886 -50601254 - FLAM_A SINE Alu -9 124 2 903 108 0 0 chrX 126372931 126373051 -50601089 + AluSq/x SINE Alu 1 120 -193 329 42 0 21 chrX 126373054 126373102 -50601038 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2442 89 0 0 chrX 126373401 126373703 -50600437 + AluSg SINE Alu 1 302 -8 2282 104 3 0 chrX 126373780 126374077 -50600063 - AluSx SINE Alu -14 298 1 239 371 41 0 chrX 126374266 126374363 -50599777 - L2 LINE L2 -26 3287 3187 1947 93 19 4 chrX 126375236 126375495 -50598645 + AluSg SINE Alu 38 300 -10 2558 38 0 42 chrX 126376045 126376358 -50597782 + AluY SINE Alu 2 301 -10 679 236 84 11 chrX 126376905 126377083 -50597057 + MIR3 SINE MIR 7 197 -11 209 125 0 0 chrX 126378815 126378847 -50595293 - L2 LINE L2 -4 3309 3278 376 81 0 113 chrX 126378893 126378955 -50595185 + Tigger5 DNA MER2_type 1 55 -2268 * 432 111 28 14 chrX 126378924 126378996 -50595144 + Tigger5 DNA MER2_type 2251 2323 0 272 114 0 23 chrX 126378996 126379040 -50595100 + Tigger5 DNA MER2_type 13 55 -2268 * 400 148 49 12 chrX 126379032 126379113 -50595027 + Tigger5 DNA MER2_type 2215 2298 -25 191 303 112 40 chrX 126379131 126379283 -50594857 - L2 LINE L2 -113 3159 2997 452 231 289 13 chrX 126379361 126379517 -50594623 + MIR SINE MIR 17 215 -47 2116 135 0 0 chrX 126379631 126379934 -50594206 + AluSx SINE Alu 1 303 -9 1724 148 34 30 chrX 126380066 126380364 -50593776 + AluJo SINE Alu 1 299 -13 25 0 0 0 chrX 126380662 126380687 -50593453 + AT_rich Low_complexity Low_complexity 1 25 0 216 200 0 0 chrX 126383061 126383111 -50591029 + (CA)n Simple_repeat Simple_repeat 1 50 0 186 43 0 0 chrX 126386134 126386157 -50587983 + (TAA)n Simple_repeat Simple_repeat 2 24 0 604 243 143 21 chrX 126386186 126386375 -50587765 - MIR SINE MIR -48 214 3 2378 86 0 0 chrX 126386630 126386921 -50587219 - AluSq SINE Alu -9 304 14 706 244 89 11 chrX 126386969 126387149 -50586991 - MIR3 SINE MIR -12 196 3 362 279 111 47 chrX 126388443 126388633 -50585507 - MIR SINE MIR -3 259 58 431 273 108 0 chrX 126388720 126388859 -50585281 - MIR SINE MIR -30 232 79 1519 158 0 31 chrX 126389194 126389453 -50584687 + AluJo SINE Alu 31 281 -31 222 37 0 0 chrX 126389458 126389485 -50584655 + (GA)n Simple_repeat Simple_repeat 2 28 0 1949 124 0 11 chrX 126389485 126389767 -50584373 + AluJb SINE Alu 3 281 -31 30 0 0 44 chrX 126389768 126389791 -50584349 + AT_rich Low_complexity Low_complexity 1 23 -20 2498 57 0 3 chrX 126389791 126390089 -50584051 - AluY SINE Alu -13 298 2 30 0 0 44 chrX 126390089 126390110 -50584030 + AT_rich Low_complexity Low_complexity 23 43 0 219 317 18 43 chrX 126391122 126391286 -50582854 - L2 LINE L2 -213 3059 2900 376 173 0 0 chrX 126391456 126391531 -50582609 + AluSx SINE Alu 1 62 -246 284 196 0 0 chrX 126391529 126391575 -50582565 - Alu SINE Alu -254 48 3 * 2176 107 7 7 chrX 126391582 126391892 -50582248 - AluY SINE Alu -1 310 1 1948 96 0 0 chrX 126391921 126392170 -50581970 + AluSx SINE Alu 61 309 -3 2021 115 32 4 chrX 126392809 126393108 -50581032 + AluSx SINE Alu 1 307 0 907 126 0 0 chrX 126393167 126393294 -50580846 + FLAM_C SINE Alu 12 138 -5 499 100 58 8 chrX 126393294 126393414 -50580726 + (TA)n Simple_repeat Simple_repeat 1 126 0 332 283 99 21 chrX 126393416 126393607 -50580533 - L1ME4a LINE L1 -23 6098 5893 2198 92 0 7 chrX 126393608 126393902 -50580238 + AluY SINE Alu 1 292 -19 658 201 73 6 chrX 126393902 126394066 -50580074 - L1ME4a LINE L1 -402 5719 5545 2288 97 3 0 chrX 126394227 126394525 -50579615 - AluSp SINE Alu -14 299 1 2187 111 10 0 chrX 126395594 126395891 -50578249 + AluSx SINE Alu 1 300 -12 204 311 134 17 chrX 126396031 126396150 -50577990 - L2 LINE L2 -11 3302 3170 2214 98 3 7 chrX 126396474 126396771 -50577369 - AluSx SINE Alu -16 296 1 249 33 0 0 chrX 126397720 126397750 -50576390 + (TCCCC)n Simple_repeat Simple_repeat 3 32 0 264 149 0 0 chrX 126397751 126397798 -50576342 + (TTCC)n Simple_repeat Simple_repeat 3 49 0 1107 167 0 28 chrX 126399402 126399582 -50574558 + FAM SINE Alu 1 175 0 2227 91 3 0 chrX 126399622 126399929 -50574211 + AluSp SINE Alu 1 308 0 747 236 50 30 chrX 126400080 126400279 -50573861 + MIR SINE MIR 17 219 -43 285 88 70 35 chrX 126400560 126400617 -50573523 - MER58 DNA MER1_type -2273 147 89 245 290 43 0 chrX 126400677 126400746 -50573394 - MER58 DNA MER1_type -143 72 1 435 195 49 92 chrX 126402641 126402805 -50571335 + MER103 DNA DNA 2 158 -8 1262 233 64 148 chrX 126403156 126403765 -50570375 + MER68 LTR ERV1 1 558 -4 2032 177 8 38 chrX 126403779 126404151 -50569989 - MLT1A1 LTR MaLR 0 365 5 736 229 57 16 chrX 126404547 126404739 -50569401 - MIR SINE MIR 0 262 63 2161 96 21 3 chrX 126404846 126405137 -50569003 + AluSx SINE Alu 1 296 -16 1884 116 65 0 chrX 126405261 126405537 -50568603 + AluSq SINE Alu 5 298 -15 1924 240 88 67 chrX 126405747 126405872 -50568268 - L2 LINE L2 0 3313 3192 495 0 0 0 chrX 126405872 126405927 -50568213 + (TG)n Simple_repeat Simple_repeat 1 55 0 1924 240 88 67 chrX 126405927 126406847 -50567293 - L2 LINE L2 -121 3192 2232 39 0 0 0 chrX 126407242 126407281 -50566859 + AT_rich Low_complexity Low_complexity 1 39 0 180 217 157 60 chrX 126407321 126407404 -50566736 + MIR3 SINE MIR 72 162 -46 24 32 0 0 chrX 126407895 126407926 -50566214 + AT_rich Low_complexity Low_complexity 1 31 0 1339 135 14 0 chrX 126407926 126408141 -50565999 + L1MA4 LINE L1 6049 6266 -34 300 373 34 25 chrX 126408408 126408526 -50565614 + L2 LINE L2 3110 3228 -44 2182 123 3 3 chrX 126408688 126408997 -50565143 - AluSx SINE Alu -3 309 1 21 36 0 0 chrX 126409129 126409157 -50564983 + AT_rich Low_complexity Low_complexity 1 28 0 210 204 20 0 chrX 126409285 126409334 -50564806 + (TAA)n Simple_repeat Simple_repeat 1 50 0 486 318 35 35 chrX 126409361 126409562 -50564578 - MIR SINE MIR -44 218 18 1768 153 37 10 chrX 126410017 126410312 -50563828 - AluJo SINE Alu -9 303 1 4342 168 40 23 chrX 126410574 126411171 -50562969 - L1MB8 LINE L1 0 6178 5592 2226 115 3 3 chrX 126411171 126411484 -50562656 - AluSq SINE Alu 0 313 1 4342 168 40 23 chrX 126411484 126412017 -50562123 - L1MB8 LINE L1 -586 5592 4837 1676 157 62 16 chrX 126413360 126413666 -50560474 - MER2 DNA MER2_type -20 325 6 843 153 0 0 chrX 126414101 126414219 -50559921 + FLAM_C SINE Alu 1 118 -25 2183 57 0 67 chrX 126414804 126415129 -50559011 - AluY SINE Alu 0 305 1 957 203 33 0 chrX 126417185 126417367 -50556773 - MER5A DNA MER1_type -1 188 1 258 128 43 0 chrX 126417710 126417757 -50556383 + Alu SINE Alu 248 296 -4 2654 99 31 6 chrX 126417985 126418340 -50555800 - MLT1A1 LTR MaLR 0 365 2 340 221 65 0 chrX 126419038 126419115 -50555025 + L2 LINE L2 3232 3313 0 2344 94 3 0 chrX 126419205 126419503 -50554637 + AluSq SINE Alu 1 299 -14 2191 98 7 0 chrX 126419771 126420057 -50554083 + AluSx SINE Alu 1 288 -24 2218 104 3 10 chrX 126420539 126420836 -50553304 + AluSx SINE Alu 1 295 -17 445 301 187 10 chrX 126421098 126421307 -50552833 + MIR SINE MIR 4 249 -13 2471 62 7 7 chrX 126421534 126421838 -50552302 + AluY SINE Alu 1 304 -7 195 260 29 115 chrX 126422031 126422135 -50552005 + L2 LINE L2 3178 3272 0 2049 110 42 32 chrX 126422295 126422603 -50551537 - AluSx SINE Alu -1 311 1 35 63 0 0 chrX 126423137 126423200 -50550940 + AT_rich Low_complexity Low_complexity 1 63 0 2377 78 0 23 chrX 126424517 126424825 -50549315 - AluY SINE Alu -10 301 1 220 157 0 86 chrX 126424845 126424915 -50549225 + T-rich Low_complexity Low_complexity 2 65 0 1716 160 41 24 chrX 126425750 126426043 -50548097 + AluJo SINE Alu 1 298 -14 236 178 219 14 chrX 126426303 126426376 -50547764 - L1MB4 LINE L1 0 6180 6093 21 0 0 0 chrX 126426860 126426881 -50547259 + AT_rich Low_complexity Low_complexity 1 21 0 2376 55 41 0 chrX 126426951 126427243 -50546897 - AluY SINE Alu -7 304 1 1257 236 96 8 chrX 126427251 126427607 -50546533 - L2 LINE L2 -2 3311 2925 2251 167 53 55 chrX 126427607 126427863 -50546277 + L1MB5 LINE L1 5514 5744 -421 2104 119 0 0 chrX 126427863 126428148 -50545992 + AluSx SINE Alu 2 286 -26 2251 167 53 55 chrX 126428148 126428403 -50545737 + L1MB5 LINE L1 5744 5998 -167 2146 109 7 3 chrX 126428460 126428753 -50545387 + AluSg SINE Alu 2 295 -15 394 202 40 0 chrX 126428754 126428853 -50545287 + L1M4 LINE L1 4738 4840 -1306 678 210 105 65 chrX 126429237 126429485 -50544655 + MIR SINE MIR 2 259 -3 642 88 0 0 chrX 126429784 126429864 -50544276 + MADE1 DNA Mariner 1 80 0 389 332 62 37 chrX 126430126 126430310 -50543830 + MIR SINE MIR 1 179 -83 2407 143 35 67 chrX 126430310 126430692 -50543448 - MER47B DNA MER2_type -1905 418 25 1853 158 3 3 chrX 126430692 126430990 -50543150 + AluSx SINE Alu 1 298 -14 2407 143 35 67 chrX 126430990 126431001 -50543139 - MER47B DNA MER2_type -2298 25 15 2380 81 0 23 chrX 126431001 126431310 -50542830 + AluSg SINE Alu 1 302 -8 2407 143 35 67 chrX 126431310 126431347 -50542793 - MER47B DNA MER2_type -2308 15 1 389 332 62 37 chrX 126431347 126431403 -50542737 + MIR SINE MIR 179 248 -14 192 277 0 0 chrX 126431406 126431489 -50542651 + (CTG)n Simple_repeat Simple_repeat 1 83 0 2324 86 0 16 chrX 126431917 126432232 -50541908 - AluSx SINE Alu -2 310 1 286 333 0 0 chrX 126433040 126433115 -50541025 - L3 LINE CR1 -19 1558 1484 258 257 48 72 chrX 126433703 126433882 -50540258 + MIR SINE MIR 45 262 0 2166 92 4 4 chrX 126434065 126434388 -50539752 - AluSx SINE Alu 0 323 1 2103 87 0 55 chrX 126434586 126434898 -50539242 - AluSg SINE Alu -15 295 1 2426 71 0 0 chrX 126435036 126435333 -50538807 + AluY SINE Alu 1 297 -14 376 279 38 55 chrX 126436046 126436229 -50537911 - MER5A DNA MER1_type -8 181 2 1973 112 4 0 chrX 126436329 126436598 -50537542 - AluSx SINE Alu 0 312 43 456 251 114 86 chrX 126437441 126437564 -50536576 + MIR SINE MIR 1 119 -143 1713 172 0 38 chrX 126437564 126437693 -50536447 + AluJo SINE Alu 1 133 -179 2275 117 0 3 chrX 126437693 126438002 -50536138 - AluSx SINE Alu -4 308 1 1713 172 0 38 chrX 126438002 126438186 -50535954 + AluJo SINE Alu 133 302 -10 2179 88 0 34 chrX 126438196 126438525 -50535615 + AluSg SINE Alu 1 319 0 456 251 114 86 chrX 126438525 126438643 -50535497 + MIR SINE MIR 127 262 0 1153 175 14 14 chrX 126438998 126439215 -50534925 + AluJb SINE Alu 78 294 -18 1986 127 45 0 chrX 126439220 126439541 -50534599 + AluSx SINE Alu 1 312 0 963 252 97 47 chrX 126439563 126439738 -50534402 + L2 LINE L2 2818 2983 -330 1676 201 0 6 chrX 126439738 126440051 -50534089 - AluJb SINE Alu -1 311 1 963 252 97 47 chrX 126440051 126440339 -50533801 + L2 LINE L2 2983 3304 -9 2268 99 13 0 chrX 126440351 126440654 -50533486 + AluSq SINE Alu 1 307 -6 503 118 12 0 chrX 126440654 126440739 -50533401 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 2475 96 31 6 chrX 126640772 126641127 -50333013 + MLT1A1 LTR MaLR 2 365 0 237 98 49 0 chrX 126641361 126641402 -50332738 - Alu SINE Alu -10 291 249 876 203 33 0 chrX 126641745 126641927 -50332213 + MER5A DNA MER1_type 1 188 -1 2157 57 0 67 chrX 126643983 126644308 -50329832 + AluY SINE Alu 1 305 0 853 142 0 45 chrX 126644877 126645011 -50329129 - FLAM_C SINE Alu -15 128 1 1525 152 63 17 chrX 126645446 126645748 -50328392 + MER2 DNA MER2_type 6 321 -24 3931 170 40 23 chrX 126647095 126647628 -50326512 + L1MB8 LINE L1 4837 5360 -818 2227 115 3 3 chrX 126647628 126647941 -50326199 + AluSq SINE Alu 1 313 0 3931 170 40 23 chrX 126647941 126648538 -50325602 + L1MB8 LINE L1 5360 6178 0 1772 153 37 10 chrX 126648800 126649095 -50325045 + AluJo SINE Alu 1 303 -9 494 318 35 35 chrX 126649551 126649752 -50324388 + MIR SINE MIR 18 218 -44 210 204 20 0 chrX 126649779 126649828 -50324312 + (TTA)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chrX 126649956 126649984 -50324156 + AT_rich Low_complexity Low_complexity 1 28 0 2189 123 3 3 chrX 126650116 126650425 -50323715 + AluSx SINE Alu 1 309 -3 313 373 34 25 chrX 126650587 126650705 -50323435 - L2 LINE L2 -44 3228 3110 1224 128 14 0 chrX 126650975 126651186 -50322954 - L1MA4 LINE L1 -36 6264 6051 25 31 0 0 chrX 126651187 126651219 -50322921 + AT_rich Low_complexity Low_complexity 1 32 0 181 217 157 60 chrX 126651710 126651793 -50322347 - MIR3 SINE MIR -46 162 72 39 0 0 0 chrX 126651833 126651872 -50322268 + AT_rich Low_complexity Low_complexity 1 39 0 1951 239 88 68 chrX 126652267 126653188 -50320952 + L2 LINE L2 2232 3192 -121 495 0 0 0 chrX 126653188 126653243 -50320897 + (CA)n Simple_repeat Simple_repeat 1 55 0 1951 239 88 68 chrX 126653243 126653368 -50320772 + L2 LINE L2 3192 3313 0 1892 121 64 0 chrX 126653578 126653858 -50320282 - AluSq SINE Alu -15 298 1 2159 96 21 3 chrX 126653978 126654269 -50319871 - AluSx SINE Alu -16 296 1 748 246 53 19 chrX 126654349 126654568 -50319572 + MIR SINE MIR 43 262 0 1868 175 8 38 chrX 126654964 126655336 -50318804 + MLT1A1 LTR MaLR 5 365 0 1029 236 62 146 chrX 126655350 126655959 -50318181 - MER68 LTR ERV1 -4 558 1 371 201 49 92 chrX 126656310 126656474 -50317666 - MER103 DNA DNA -8 158 2 254 88 70 35 chrX 126658499 126658556 -50315584 + MER58 DNA MER1_type 89 147 -194 756 241 50 30 chrX 126658837 126659036 -50315104 - MIR SINE MIR -43 219 17 2218 91 3 0 chrX 126659187 126659494 -50314646 - AluSp SINE Alu 0 308 1 1034 167 0 28 chrX 126659536 126659716 -50314424 - FAM SINE Alu 0 175 1 24 0 0 0 chrX 126661932 126661956 -50312184 + AT_rich Low_complexity Low_complexity 1 24 0 4101 108 16 23 chrX 126662004 126662649 -50311491 + L1PA16 LINE L1 5524 6163 -3 2382 81 0 7 chrX 126662656 126662952 -50311188 + AluSg SINE Alu 1 294 -16 4685 175 28 43 chrX 126663367 126664246 -50309894 + L1MA10 LINE L1 5254 6115 -219 2387 88 3 19 chrX 126664246 126664554 -50309586 + AluSp SINE Alu 1 303 -10 4685 175 28 43 chrX 126664554 126664770 -50309370 + L1MA10 LINE L1 6115 6333 -1 303 296 0 11 chrX 126665099 126665187 -50308953 + L1 LINE L1 2267 2353 -3793 2051 140 3 3 chrX 126666143 126666451 -50307689 + AluSx SINE Alu 1 308 -4 2210 133 97 15 chrX 126666500 126666912 -50307228 - L1MA4A LINE L1 -11 6292 5847 21 36 0 0 chrX 126667331 126667359 -50306781 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chrX 126667982 126668004 -50306136 + AT_rich Low_complexity Low_complexity 1 22 0 231 250 0 0 chrX 126669320 126669368 -50304772 - MIR SINE MIR -131 131 84 182 294 0 0 chrX 126669956 126670007 -50304133 - L2 LINE L2 -2 3311 3261 430 141 22 22 chrX 126670755 126670847 -50303293 + L1MD3 LINE L1 7904 7995 0 466 189 157 78 chrX 126670877 126671094 -50303046 + L1ME LINE L1 5551 5784 -337 21 36 0 0 chrX 126671443 126671471 -50302669 + AT_rich Low_complexity Low_complexity 1 28 0 237 283 106 24 chrX 126671696 126671806 -50302334 + MIR SINE MIR 29 149 -73 * 349 343 68 30 chrX 126671801 126672037 -50302103 - MIR SINE MIR 0 262 18 23 0 0 0 chrX 126672140 126672163 -50301977 + AT_rich Low_complexity Low_complexity 1 23 0 275 213 0 0 chrX 126672203 126672250 -50301890 - MER5B DNA MER1_type -2 176 130 292 239 152 0 chrX 126672251 126672343 -50301797 - Charlie1a DNA MER1_type -1326 129 24 1892 138 7 17 chrX 126672390 126672687 -50301453 + AluJo SINE Alu 1 294 -18 724 236 80 66 chrX 126672746 126672865 -50301275 + MIR SINE MIR 47 172 -90 2160 114 3 25 chrX 126672865 126673182 -50300958 + AluSx SINE Alu 1 310 -2 724 236 80 66 chrX 126673182 126673274 -50300866 + MIR SINE MIR 172 261 -1 2223 120 0 7 chrX 126673444 126673753 -50300387 - AluSx SINE Alu -5 307 1 798 176 0 22 chrX 126673753 126673889 -50300251 - AluJo/FLAM SINE Alu -169 133 1 1900 144 3 10 chrX 126674097 126674396 -50299744 - AluJo SINE Alu -15 297 1 28 29 0 0 chrX 126674770 126674805 -50299335 + AT_rich Low_complexity Low_complexity 1 35 0 2605 61 0 3 chrX 126675407 126675719 -50298421 + AluY SINE Alu 1 311 0 1952 128 4 7 chrX 126676696 126676977 -50297163 - AluSx SINE Alu -11 301 22 2045 103 53 0 chrX 126678038 126678319 -50295821 - AluSq SINE Alu -17 296 1 325 124 0 0 chrX 126678327 126678383 -50295757 - AluSp SINE Alu -106 197 153 226 267 0 40 chrX 126678706 126678781 -50295359 + HAL1 LINE L1 485 556 -1951 403 271 53 27 chrX 126678838 126679026 -50295114 + HAL1 LINE L1 750 942 -1565 * 11653 166 43 3 chrX 126679023 126681078 -50293062 + L1PA13 LINE L1 1 2137 -4650 2601 194 65 3 chrX 126681076 126681725 -50292415 + L1PA13 LINE L1 3662 4350 -2447 * 1641 161 18 18 chrX 126681725 126682036 -50292104 + AluSx SINE Alu 2 312 0 831 229 6 11 chrX 126682044 126682219 -50291921 + AluJb SINE Alu 134 307 -5 366 255 230 20 chrX 126682236 126682436 -50291704 + HAL1 LINE L1 1660 1901 -606 720 134 10 149 chrX 126682526 126682727 -50291413 + AluSg/x SINE Alu 137 309 -3 2063 151 0 0 chrX 126682743 126683055 -50291085 + AluSx SINE Alu 1 312 0 8708 173 6 2 chrX 126683063 126683351 -50290789 + L1PA13 LINE L1 4334 4620 -2194 2381 86 0 0 chrX 126683351 126683643 -50290497 + AluSc SINE Alu 1 292 -17 8708 173 6 2 chrX 126683643 126685838 -50288302 + L1PA13 LINE L1 4620 6813 -1 320 282 46 43 chrX 126685961 126686040 -50288100 + HAL1 LINE L1 1121 1198 -1309 2826 13 0 0 chrX 126686040 126686351 -50287789 - AluYa5 SINE Alu 0 311 1 320 282 46 43 chrX 126686351 126686576 -50287564 + HAL1 LINE L1 1198 1426 -1081 1707 166 13 16 chrX 126686584 126686891 -50287249 + AluSx SINE Alu 1 306 -6 805 236 11 6 chrX 126686895 126687069 -50287071 + AluJb SINE Alu 134 308 -4 370 331 123 18 chrX 126687074 126687237 -50286903 + HAL1 LINE L1 1648 1827 -680 24 32 0 0 chrX 126687261 126687292 -50286848 + AT_rich Low_complexity Low_complexity 1 31 0 861 105 19 56 chrX 126687346 126687508 -50286632 + AluSg/x SINE Alu 135 290 -20 1784 153 10 20 chrX 126687526 126687827 -50286313 + AluSx SINE Alu 5 302 -10 2422 70 7 3 chrX 126687830 126688131 -50286009 + AluY SINE Alu 1 302 -9 375 220 105 68 chrX 126688224 126688519 -50285621 + HAL1 LINE L1 2077 2382 -125 1843 126 36 30 chrX 126688753 126689054 -50285086 + AluSg SINE Alu 3 305 -5 360 301 151 7 chrX 126689710 126689856 -50284284 + MIR SINE MIR 8 174 -88 351 311 118 18 chrX 126690383 126690611 -50283529 + L1ME4a LINE L1 5859 6109 -12 2145 111 10 0 chrX 126690622 126690910 -50283230 + AluSx SINE Alu 1 291 -21 2480 85 0 0 chrX 126690912 126691218 -50282922 + AluY SINE Alu 1 306 -5 32 26 0 0 chrX 126691195 126691234 -50282906 + AT_rich Low_complexity Low_complexity 1 39 0 187 388 66 25 chrX 126691440 126691561 -50282579 + MIR SINE MIR 25 150 -58 969 138 75 69 chrX 126692716 126692890 -50281250 - FAM SINE Alu 0 175 1 842 178 98 0 chrX 126693122 126693285 -50280855 - MER3 DNA MER1_type 0 209 31 4586 137 25 4 chrX 126693919 126694644 -50279496 + L1MB7 LINE L1 5436 6175 -9 2347 113 0 0 chrX 126694656 126694989 -50279151 + AluSg SINE Alu 1 333 0 500 248 79 106 chrX 126694994 126695248 -50278892 + MLT1K LTR MaLR 312 558 -30 489 332 60 15 chrX 126696518 126696717 -50277423 + MIR SINE MIR 22 229 -33 1246 182 73 3 chrX 126696850 126697152 -50276988 - Charlie1 DNA MER1_type 0 2761 2439 1793 147 68 37 chrX 126697160 126697541 -50276599 + L1MA7 LINE L1 5899 6291 0 402 213 0 0 chrX 126697615 126697690 -50276450 + U3 snRNA snRNA 1 75 -142 2294 91 0 0 chrX 126697732 126698030 -50276110 + AluSg SINE Alu 1 298 -12 246 373 64 0 chrX 126698331 126698441 -50275699 + MIR SINE MIR 24 140 -68 210 143 0 0 chrX 126699711 126699746 -50274394 + (GGA)n Simple_repeat Simple_repeat 3 37 0 600 139 0 0 chrX 126700505 126700591 -50273549 + AluSx SINE Alu 2 87 -226 892 109 8 0 chrX 126700639 126700758 -50273382 + AluSx SINE Alu 86 205 -107 2462 61 3 0 chrX 126700896 126701190 -50272950 - AluSp SINE Alu -18 295 1 325 275 0 0 chrX 126701421 126701490 -50272650 + LTR52 LTR ERVL 80 148 -273 236 243 95 0 chrX 126702116 126702190 -50271950 + L2 LINE L2 1993 2073 -1241 1546 206 14 28 chrX 126702259 126702614 -50271526 - L1MB7 LINE L1 -19 6165 5816 492 128 0 0 chrX 126702614 126702692 -50271448 + (TCCC)n Simple_repeat Simple_repeat 4 81 0 1825 154 0 0 chrX 126702696 126702975 -50271165 - AluSx SINE Alu -31 281 3 747 185 0 40 chrX 126702978 126703115 -50271025 - L1MB7 LINE L1 -350 5828 5696 2077 169 38 19 chrX 126703115 126703483 -50270657 - THE1C LTR MaLR 0 375 1 747 185 0 40 chrX 126703483 126703496 -50270644 - L1MB7 LINE L1 -482 5696 5684 2388 87 0 3 chrX 126703498 126703797 -50270343 - AluSq SINE Alu -15 298 1 3250 180 42 49 chrX 126703808 126703961 -50270179 - L1MB8 LINE L1 -1 6177 6024 2577 62 0 0 chrX 126703961 126704265 -50269875 + AluY SINE Alu 1 304 -7 3250 180 42 49 chrX 126704265 126704865 -50269275 - L1MB8 LINE L1 -154 6024 5429 321 341 8 8 chrX 126705134 126705260 -50268880 + G-rich Low_complexity Low_complexity 2 127 0 1984 121 11 4 chrX 126705714 126706015 -50268125 + AluSx SINE Alu 1 303 0 608 267 20 13 chrX 126706125 126706275 -50267865 - MER63A DNA MER1_type -7 203 53 335 331 0 54 chrX 126706482 126706630 -50267510 - MIR3 SINE MIR -49 159 20 895 223 92 13 chrX 126706895 126707124 -50267016 - MIR SINE MIR -15 247 1 24 0 0 0 chrX 126707191 126707215 -50266925 + AT_rich Low_complexity Low_complexity 1 24 0 1330 94 33 0 chrX 126708096 126708276 -50265864 + MER51A LTR ERV1 3 188 -446 2100 84 79 9 chrX 126708285 126708647 -50265493 + LTR7 LTR ERV1 3 450 0 8145 115 7 13 chrX 126708647 126710332 -50263808 + HERVH LTR ERV1 1 1979 -5734 2809 104 7 12 chrX 126710324 126710739 -50263401 + HERVH LTR ERV1 7301 7713 0 * 2140 84 84 4 chrX 126710739 126711104 -50263036 + LTR7 LTR ERV1 1 450 0 1828 94 123 35 chrX 126711104 126711420 -50262720 + MER51A LTR ERV1 282 625 -9 1335 168 25 55 chrX 126711443 126711717 -50262423 + HUERS-P3 LTR ERV1 1 266 -7550 1495 181 27 62 chrX 126711730 126712068 -50262072 + HUERS-P3 LTR ERV1 220 502 -4378 299 228 24 73 chrX 126712233 126712356 -50261784 + HUERS-P3 LTR ERV1 693 809 -7007 409 286 34 5 chrX 126712542 126712744 -50261396 + HUERS-P3 LTR ERV1 1328 1780 -6866 304 328 8 8 chrX 126713034 126713165 -50260975 + HUERS-P3 LTR ERV1 1900 2030 -1058 517 254 111 84 chrX 126713375 126713734 -50260406 + MER51A-int LTR ERV1 1594 2657 -2992 259 164 18 18 chrX 126714245 126714300 -50259840 + MER51A-int LTR ERV1 2640 2694 -5732 3521 303 56 50 chrX 126714427 126714597 -50259543 + MER51A-int LTR ERV1 3419 3586 -3505 2324 90 3 0 chrX 126714597 126714886 -50259254 + AluSp SINE Alu 5 294 -19 3521 303 56 50 chrX 126714886 126717795 -50256345 + MER51A-int LTR ERV1 3586 6159 -932 2087 151 6 0 chrX 126717959 126718283 -50255857 + MER51A-int LTR ERV1 7490 7815 -1 1852 129 93 63 chrX 126718285 126718800 -50255340 + MER51A LTR ERV1 1 634 0 341 356 117 34 chrX 126718831 126719036 -50255104 - L2 LINE L2 0 3272 3051 2417 93 3 0 chrX 126719202 126719513 -50254627 - AluSx SINE Alu 0 312 1 2089 133 0 0 chrX 126720091 126720393 -50253747 - AluSx SINE Alu -10 302 1 269 246 182 18 chrX 126720479 126720589 -50253551 + L2 LINE L2 3186 3313 0 422 308 45 8 chrX 126721363 126721496 -50252644 + MLT1L LTR MaLR 165 302 -313 246 32 0 0 chrX 126721514 126721545 -50252595 + (GA)n Simple_repeat Simple_repeat 2 32 0 548 235 43 94 chrX 126721618 126721852 -50252288 + MLT1L LTR MaLR 365 586 -29 5101 142 52 93 chrX 126722403 126723520 -50250620 - MER11C LTR ERVK 0 1071 1 2651 217 79 52 chrX 126724955 126725562 -50248578 - L1M4 LINE L1 -2096 4050 3410 2435 97 0 0 chrX 126725562 126725873 -50248267 - AluY SINE Alu 0 311 1 2651 217 79 52 chrX 126725873 126726155 -50247985 - L1M4 LINE L1 -2736 3410 3137 987 229 29 21 chrX 126726200 126726479 -50247661 + L1MB8 LINE L1 5889 6169 -9 899 312 121 19 chrX 126726817 126727231 -50246909 - LTR67 LTR ERVL -8 549 94 228 67 0 0 chrX 126727330 126727360 -50246780 + (CA)n Simple_repeat Simple_repeat 2 31 0 429 288 150 19 chrX 126727380 126727540 -50246600 + MER5A DNA MER1_type 9 189 0 592 156 0 33 chrX 126727612 126727734 -50246406 + MER53 DNA DNA 1 118 -71 2458 228 87 38 chrX 126728886 126729818 -50244322 + L1MC5 LINE L1 6770 7747 -214 4242 131 84 165 chrX 126729818 126731041 -50243099 - MER52C LTR ERV1 0 1278 155 390 229 156 8 chrX 126731084 126731206 -50242934 + L1MC5 LINE L1 7752 7891 -70 243 0 0 0 chrX 126731301 126731328 -50242812 + (CA)n Simple_repeat Simple_repeat 2 28 0 1250 236 25 16 chrX 126731434 126731752 -50242388 - L1MB5 LINE L1 0 6174 5854 799 273 27 4 chrX 126731784 126732044 -50242096 - L1MB5 LINE L1 -1571 4575 4310 1987 210 17 17 chrX 126732052 126732518 -50241622 - L1MB7 LINE L1 -16 6870 6405 3459 100 0 0 chrX 126732518 126732967 -50241173 + L1PA12 LINE L1 5720 6168 0 3622 216 23 26 chrX 126732967 126733336 -50240804 - L1MB7 LINE L1 -469 6417 6048 1974 44 0 44 chrX 126733336 126733618 -50240522 + L1PA8 LINE L1 5934 6172 0 3622 216 23 26 chrX 126733618 126734599 -50239541 - L1MB7 LINE L1 -838 6048 5075 5556 80 15 1 chrX 126734609 126735333 -50238807 - L1MA2 LINE L1 0 6304 5571 3736 273 8 13 chrX 126735334 126736276 -50237864 - L1MB7 LINE L1 -5224 1625 688 275 180 0 0 chrX 126736526 126736584 -50237556 - L1 LINE L1 -1767 4379 4322 1994 101 42 7 chrX 126736609 126736895 -50237245 + AluSq SINE Alu 1 296 -17 1733 25 5 0 chrX 126736895 126737099 -50237041 - L1P LINE L1 -1085 5061 4857 1330 39 0 0 chrX 126737099 126737251 -50236889 + L1PA6 LINE L1 6002 6154 0 2304 251 42 30 chrX 126737357 126737983 -50236157 - L1MB7 LINE L1 -945 5903 5286 2107 127 10 3 chrX 126737983 126738282 -50235858 - AluSx SINE Alu -11 301 1 2304 251 42 30 chrX 126738282 126738760 -50235380 - L1MB7 LINE L1 -1562 5286 4815 2184 106 0 7 chrX 126738760 126739052 -50235088 - AluSx SINE Alu -22 290 1 2304 251 42 30 chrX 126739052 126739138 -50235002 - L1MB7 LINE L1 -2033 4815 51 3592 233 14 26 chrX 126739142 126739605 -50234535 - L1MB8 LINE L1 -7 6171 5704 1547 158 0 93 chrX 126739605 126739915 -50234225 + AluJo SINE Alu 11 291 -21 3592 233 14 26 chrX 126739915 126740299 -50233841 - L1MB8 LINE L1 -474 5704 5333 2280 117 3 0 chrX 126740299 126740599 -50233541 - AluSp SINE Alu -12 301 1 3592 233 14 26 chrX 126740599 126740902 -50233238 - L1MB8 LINE L1 -845 5333 5028 25 0 0 0 chrX 126740907 126740932 -50233208 + AT_rich Low_complexity Low_complexity 1 25 0 289 98 0 0 chrX 126740941 126740982 -50233158 - U2 snRNA snRNA -51 137 97 792 123 0 0 chrX 126740984 126741090 -50233050 - U6 snRNA snRNA -1 106 1 2258 230 16 40 chrX 126741090 126741765 -50232375 - L1MB8 LINE L1 -1101 5045 4387 986 193 0 0 chrX 126741767 126741928 -50232212 - AluJb SINE Alu -23 289 129 1559 92 88 14 chrX 126741928 126742145 -50231995 + AluSq SINE Alu 11 243 -70 1851 240 63 27 chrX 126742145 126742382 -50231758 - L1M4 LINE L1 -1057 5089 4862 2128 121 3 0 chrX 126742382 126742672 -50231468 + AluSx SINE Alu 1 291 -21 1851 240 63 27 chrX 126742672 126742758 -50231382 - L1M4 LINE L1 -1284 4862 4781 2223 111 3 3 chrX 126742758 126743064 -50231076 - AluSg SINE Alu -2 308 3 1844 141 0 78 chrX 126743066 126743386 -50230754 - AluSx SINE Alu -17 295 1 1851 240 63 27 chrX 126743386 126743804 -50230336 - L1M4 LINE L1 -1365 4781 4317 2917 223 46 25 chrX 126743820 126744067 -50230073 - L1MB7 LINE L1 -43 6141 5901 2390 66 3 41 chrX 126744067 126744386 -50229754 - AluSp SINE Alu -6 307 1 2917 223 46 25 chrX 126744386 126745875 -50228265 - L1MB7 LINE L1 -283 5901 4391 421 141 12 0 chrX 126745897 126745982 -50228158 - L1MB8 LINE L1 0 6178 6093 3925 188 38 22 chrX 126746003 126746353 -50227787 - L1MB4 LINE L1 -7 6173 5830 2235 102 7 0 chrX 126746353 126746648 -50227492 - AluSq SINE Alu -16 297 1 3925 188 38 22 chrX 126746648 126747268 -50226872 - L1MB4 LINE L1 -350 5830 5188 507 144 0 10 chrX 126747318 126747415 -50226725 + L1MB5 LINE L1 6071 6166 -8 2203 119 0 0 chrX 126747709 126748003 -50226137 + AluSq SINE Alu 1 294 -19 1870 162 0 3 chrX 126748236 126748526 -50225614 + AluJo SINE Alu 1 289 -23 1751 141 7 31 chrX 126748775 126748904 -50225236 + AluSx SINE Alu 1 132 -180 186 43 0 0 chrX 126748904 126748927 -50225213 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1751 141 7 31 chrX 126748927 126749088 -50225052 + AluSx SINE Alu 132 284 -28 6159 70 1 2 chrX 126749995 126750803 -50223337 + THE1B-int LTR MaLR 774 1580 0 2154 102 87 29 chrX 126750803 126751147 -50222993 + THE1B LTR MaLR 1 364 0 1849 138 119 11 chrX 126751270 126751648 -50222492 - L1MA4 LINE L1 -4 6296 5878 390 250 95 0 chrX 126751648 126751764 -50222376 + MER87 LTR ERV1 415 541 0 3480 133 16 24 chrX 126751849 126752864 -50221276 - L1MA4 LINE L1 -439 5861 4855 211 273 40 61 chrX 126752912 126753011 -50221129 + MIR SINE MIR 160 256 -6 1287 236 21 59 chrX 126753162 126753425 -50220715 + MER87 LTR ERV1 168 413 -128 2107 118 0 23 chrX 126753425 126753802 -50220338 + AluSx SINE Alu 1 312 0 1287 236 21 59 chrX 126753802 126753927 -50220213 + MER87 LTR ERV1 413 541 0 690 162 0 34 chrX 126754068 126754185 -50219955 - FRAM SINE Alu -23 153 41 202 207 23 92 chrX 126754366 126754453 -50219687 + MIR SINE MIR 116 196 -66 22 0 0 0 chrX 126754508 126754530 -50219610 + AT_rich Low_complexity Low_complexity 1 22 0 2653 82 0 11 chrX 126755020 126755386 -50218754 - THE1C LTR MaLR -13 362 1 201 381 48 8 chrX 126755420 126755546 -50218594 - L2 LINE L2 -5 3267 3137 251 250 83 17 chrX 126755842 126755962 -50218178 + MER103 DNA DNA 1 128 -38 4275 236 40 48 chrX 126756041 126756161 -50217979 - L1M4 LINE L1 -1116 5030 4911 752 159 48 8 chrX 126756161 126756287 -50217853 - FLAM_A SINE Alu -2 131 1 4275 236 40 48 chrX 126756287 126757855 -50216285 - L1M4 LINE L1 -1235 4911 3356 610 103 0 0 chrX 126757856 126757943 -50216197 + MSTC LTR MaLR 3 89 -339 550 195 39 19 chrX 126757943 126758097 -50216043 - L1M4 LINE L1 -869 5277 5121 1251 233 8 40 chrX 126758104 126758580 -50215560 - L1M4 LINE L1 -2786 3360 2900 1873 106 0 0 chrX 126758713 126758959 -50215181 + AluSx SINE Alu 1 246 -66 722 299 146 15 chrX 126759417 126759915 -50214225 + L2 LINE L2 2751 3313 0 257 284 49 20 chrX 126760369 126760471 -50213669 + L2 LINE L2 2761 2865 -449 431 319 47 54 chrX 126760526 126760588 -50213552 - L1M4 LINE L1 -855 5291 5230 2378 86 3 0 chrX 126760588 126760891 -50213249 - AluSx SINE Alu -8 304 1 431 319 47 54 chrX 126760891 126761107 -50213033 - L1M4 LINE L1 -916 5230 5015 568 261 39 17 chrX 126761146 126761326 -50212814 - MIR SINE MIR -2 260 77 232 229 181 0 chrX 126761357 126761440 -50212700 + MIR SINE MIR 165 262 0 248 0 31 0 chrX 126761662 126761694 -50212446 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 59 29 0 chrX 126762438 126762472 -50211668 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2046 136 0 0 chrX 126762474 126762760 -50211380 - AluSx SINE Alu -26 286 1 542 267 19 6 chrX 126763109 126763270 -50210870 + MER58B DNA MER1_type 179 341 0 3048 148 50 5 chrX 126763915 126764497 -50209643 + L1MB4 LINE L1 5552 6159 -21 2179 131 3 0 chrX 126764499 126764797 -50209343 - AluSx SINE Alu -13 299 1 2295 117 0 7 chrX 126764831 126765139 -50209001 + AluSx SINE Alu 1 306 -6 281 291 47 0 chrX 126765176 126765262 -50208878 + MIR SINE MIR 159 248 -14 * 359 226 17 104 chrX 126765253 126765368 -50208772 + L3 LINE CR1 1362 1466 -111 358 248 188 15 chrX 126765379 126765512 -50208628 - MER5A DNA MER1_type -6 183 28 963 156 82 3 chrX 126765586 126765806 -50208334 + MER33 DNA MER1_type 1 216 -88 264 59 0 0 chrX 126765811 126765845 -50208295 + (TA)n Simple_repeat Simple_repeat 2 35 0 1922 122 4 14 chrX 126765847 126766125 -50208015 - AluSx SINE Alu -25 287 13 1420 167 4 16 chrX 126766141 126766386 -50207754 + AluJo SINE Alu 58 299 -13 243 0 0 0 chrX 126766679 126766706 -50207434 + (TG)n Simple_repeat Simple_repeat 2 28 0 2129 108 25 0 chrX 126766710 126766996 -50207144 - AluSx SINE Alu -19 293 1 263 250 136 23 chrX 126767423 126767511 -50206629 + L3 LINE CR1 969 1066 -511 1727 223 10 30 chrX 126767522 126767917 -50206223 + MLT1E LTR MaLR 207 593 0 870 226 97 18 chrX 126767917 126768261 -50205879 - L1ME LINE L1 -615 5549 5177 2239 85 0 3 chrX 126768281 126768564 -50205576 - AluSx SINE Alu -30 282 1 1266 141 68 5 chrX 126768576 126768782 -50205358 - AluJb SINE Alu -55 257 39 416 250 337 5 chrX 126768800 126768996 -50205144 + MIR SINE MIR 2 262 0 2233 105 3 10 chrX 126769060 126769374 -50204766 + AluSx SINE Alu 1 312 0 258 179 0 48 chrX 126769896 126769980 -50204160 + CT-rich Low_complexity Low_complexity 2 81 0 1910 139 19 10 chrX 126769987 126770296 -50203844 - AluSx SINE Alu 0 312 1 245 211 35 0 chrX 126770910 126770987 -50203153 + (CCGGG)n Simple_repeat Simple_repeat 1 79 0 204 345 79 73 chrX 126771901 126772229 -50201911 + L2 LINE L2 2857 3186 -86 200 218 73 18 chrX 126773073 126773128 -50201012 + L3 LINE CR1 625 682 -895 500 207 81 75 chrX 126773134 126773308 -50200832 + L3 LINE CR1 836 1010 -567 524 287 111 9 chrX 126773308 126773524 -50200616 + L3 LINE CR1 1171 1408 -169 930 210 60 81 chrX 126774681 126774929 -50199211 - MIR SINE MIR -5 257 15 674 187 200 13 chrX 126775074 126775229 -50198911 + MER5A DNA MER1_type 2 185 -4 1225 199 46 0 chrX 126778621 126778903 -50195237 - L1M4 LINE L1 -2354 3792 3498 1597 181 59 12 chrX 126778937 126779275 -50194865 - MLT1A1 LTR MaLR -11 354 1 2231 204 62 42 chrX 126779289 126780077 -50194063 - L1M4 LINE L1 -2686 3460 2657 753 274 56 17 chrX 126781669 126781903 -50192237 + MIR SINE MIR 20 262 0 1263 250 151 0 chrX 126781919 126782331 -50191809 + Charlie2 DNA MER1_type 1 474 -2388 6184 94 17 2 chrX 126782827 126784103 -50190037 - L1PA16 LINE L1 -3 6163 4873 886 174 43 6 chrX 126784284 126784445 -50189695 + MER5A DNA MER1_type 17 183 -6 374 341 180 18 chrX 126784462 126785007 -50189133 + L2 LINE L2 1565 2197 -1117 2607 41 0 22 chrX 126785007 126785324 -50188816 - AluY SINE Alu -1 310 1 423 243 38 43 chrX 126785356 126785541 -50188599 - MLT1J LTR MaLR 0 511 328 1279 182 18 0 chrX 126785549 126785769 -50188371 + MER58A DNA MER1_type 1 224 0 1874 153 60 3 chrX 126785879 126786264 -50187876 - MER95 LTR ERV -16 415 9 569 268 135 46 chrX 126786297 126786703 -50187437 - L1MC5 LINE L1 -47 7952 7584 207 0 0 0 chrX 126786703 126786726 -50187414 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 569 268 135 46 chrX 126786726 126787123 -50187017 - L1MC5 LINE L1 -415 7584 7111 2586 68 0 6 chrX 126787129 126787440 -50186700 - AluSx SINE Alu -3 309 1 244 279 25 25 chrX 126787518 126787597 -50186543 - MLT1J1 LTR MaLR -289 157 79 195 348 135 0 chrX 126787911 126788000 -50186140 + L2 LINE L2 2922 3022 -250 1353 211 95 16 chrX 126788004 126788384 -50185756 + MER96B DNA MER1_type? 1 410 -7 300 277 46 41 chrX 126788852 126789047 -50185093 - L1ME4a LINE L1 -3 6118 5923 325 253 40 50 chrX 126789133 126789232 -50184908 - L1ME4a LINE L1 -1993 5815 5718 2313 117 0 0 chrX 126789982 126790290 -50183850 + AluSx SINE Alu 1 308 -4 376 211 90 8 chrX 126790331 126790464 -50183676 - L1ME4a LINE L1 -16 6105 5962 22 35 0 0 chrX 126790504 126790533 -50183607 + AT_rich Low_complexity Low_complexity 1 29 0 570 282 50 23 chrX 126790631 126790932 -50183208 - L1MC4 LINE L1 -15 8027 7719 544 167 167 0 chrX 126790988 126791102 -50183038 - FLAM_C SINE Alu 0 133 1 886 249 11 41 chrX 126791183 126791521 -50182619 - L1MC5 LINE L1 -547 7495 7205 3542 116 19 15 chrX 126791682 126792278 -50181862 - L1MB2 LINE L1 -2 6169 5572 1497 252 42 66 chrX 126792341 126792868 -50181272 - Charlie8 DNA MER1_type -1900 517 4 460 0 0 0 chrX 126793013 126793064 -50181076 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 1058 57 0 0 chrX 126793064 126793188 -50180952 - AluSc SINE Alu -27 282 159 485 16 78 0 chrX 126793204 126793268 -50180872 - MER41A LTR ERV1 -88 466 398 457 237 148 41 chrX 126793390 126793660 -50180480 - L1ME4a LINE L1 -12 6109 5811 5080 148 26 20 chrX 126793954 126794630 -50179510 - L1MB7 LINE L1 -15 6169 5488 1767 175 6 19 chrX 126794630 126794944 -50179196 - AluJb SINE Alu -2 310 1 5080 148 26 20 chrX 126794944 126795341 -50178799 - L1MB7 LINE L1 -696 5488 5095 554 294 159 10 chrX 126797300 126797501 -50176639 - MIR SINE MIR 0 262 32 655 301 115 40 chrX 126797540 126797694 -50176446 - L2 LINE L2 -485 2829 2688 585 258 72 12 chrX 126797694 126797861 -50176279 + MER5B DNA MER1_type 1 177 -1 655 301 115 40 chrX 126797861 126797882 -50176258 - L2 LINE L2 -626 2688 2670 1057 195 11 5 chrX 126797882 126798067 -50176073 - MER5A DNA MER1_type -3 186 1 655 301 115 40 chrX 126798067 126798517 -50175623 - L2 LINE L2 -644 2670 2156 21 0 0 0 chrX 126798712 126798733 -50175407 + AT_rich Low_complexity Low_complexity 1 21 0 2013 87 8 0 chrX 126798733 126798986 -50175154 - AluSg SINE Alu -51 259 5 316 226 65 52 chrX 126799048 126799203 -50174937 - L2 LINE L2 -1264 2050 1894 327 263 63 21 chrX 126799340 126799435 -50174705 - L2 LINE L2 -36 3277 3179 833 272 60 16 chrX 126799528 126799778 -50174362 - MIR SINE MIR 0 262 2 817 122 92 55 chrX 126800048 126800212 -50173928 + AluJo SINE Alu 126 295 -17 1149 309 74 14 chrX 126800259 126800933 -50173207 - L2 LINE L2 -1 3312 2584 191 364 0 0 chrX 126801297 126801352 -50172788 + L2 LINE L2 3246 3300 -13 262 258 58 17 chrX 126801487 126801607 -50172533 - MIR SINE MIR -47 215 91 526 252 73 48 chrX 126801615 126801728 -50172412 + L2 LINE L2 3100 3222 -91 1883 212 112 28 chrX 126801728 126802228 -50171912 - MLT1F LTR MaLR 0 542 1 526 252 73 48 chrX 126802228 126802320 -50171820 + L2 LINE L2 3222 3310 -3 207 0 0 0 chrX 126803355 126803378 -50170762 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2573 51 0 0 chrX 126803381 126803673 -50170467 - AluY SINE Alu -19 292 1 220 196 59 0 chrX 126804614 126804665 -50169475 + L2 LINE L2 3256 3309 -4 222 353 98 71 chrX 126804676 126804942 -50169198 - L2 LINE L2 -1 3271 2999 4156 119 36 18 chrX 126804967 126805624 -50168516 - L1MC1 LINE L1 -232 6101 5433 2071 89 4 11 chrX 126805741 126806011 -50168129 - AluSq SINE Alu -45 268 1 358 325 106 0 chrX 126806208 126806331 -50167809 + L2 LINE L2 3137 3272 0 1157 110 37 0 chrX 126806428 126806591 -50167549 + AluSg/x SINE Alu 131 299 -11 599 214 218 41 chrX 126806665 126806799 -50167341 + L2 LINE L2 2199 2308 -1006 752 179 0 0 chrX 126806799 126806922 -50167218 + FLAM_A SINE Alu 4 126 -7 599 214 218 41 chrX 126806922 126807058 -50167082 + L2 LINE L2 2308 2517 -797 733 193 104 24 chrX 126807229 126807441 -50166699 - MIR SINE MIR -26 236 8 276 30 0 0 chrX 126808170 126808203 -50165937 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 504 48 0 0 chrX 126808202 126808265 -50165875 + (TA)n Simple_repeat Simple_repeat 2 64 0 2403 86 0 13 chrX 126808265 126808568 -50165572 - AluSx SINE Alu -13 299 1 270 0 0 0 chrX 126809861 126809891 -50164249 + (A)n Simple_repeat Simple_repeat 1 30 0 2162 97 3 7 chrX 126810074 126810363 -50163777 + AluSg SINE Alu 1 288 -22 701 266 88 25 chrX 126810365 126810639 -50163501 + L1ME4a LINE L1 5598 5888 -233 326 217 179 9 chrX 126810650 126810756 -50163384 + L1ME4a LINE L1 5998 6121 0 1562 179 54 7 chrX 126811479 126811758 -50162382 + AluJo SINE Alu 1 292 -20 2133 115 0 0 chrX 126812047 126812360 -50161780 - AluSg SINE Alu 0 313 1 274 305 66 13 chrX 126812655 126812806 -50161334 - MIR SINE MIR -6 256 98 578 70 50 10 chrX 126812973 126813073 -50161067 - L1MA7 LINE L1 0 6291 6188 1531 166 92 0 chrX 126814729 126815024 -50159116 + MER33 DNA MER1_type 3 324 0 694 183 15 124 chrX 126817965 126818094 -50156046 - MER5A DNA MER1_type -9 180 79 2366 97 3 3 chrX 126818094 126818404 -50155736 - AluSq SINE Alu -3 310 1 694 183 15 124 chrX 126818404 126818476 -50155664 - MER5A DNA MER1_type -110 79 1 275 225 34 34 chrX 126818472 126818484 -50155656 + MIR SINE MIR 107 118 -144 * 868 216 11 0 chrX 126818484 126818660 -50155480 - MER5B DNA MER1_type 0 178 1 275 225 34 34 chrX 126818660 126818736 -50155404 + MIR SINE MIR 117 195 -67 7345 44 4 9 chrX 126818740 126819816 -50154324 + L1PA7 LINE L1 5077 6153 -1 310 224 137 81 chrX 126819929 126819989 -50154151 + MER5A DNA MER1_type 10 65 -124 2353 113 0 0 chrX 126819989 126820299 -50153841 + AluSx SINE Alu 1 310 -2 310 224 137 81 chrX 126820299 126820399 -50153741 + MER5A DNA MER1_type 65 179 -10 2199 178 111 17 chrX 126820426 126820692 -50153448 - MLT1D LTR MaLR 0 505 265 2381 81 0 7 chrX 126820692 126820987 -50153153 - AluSg SINE Alu -17 293 1 2199 178 111 17 chrX 126820987 126821181 -50152959 - MLT1D LTR MaLR -240 265 2 399 248 16 16 chrX 126821397 126821518 -50152622 + L1MC4a LINE L1 5761 5881 -1927 25 0 0 0 chrX 126821705 126821730 -50152410 + AT_rich Low_complexity Low_complexity 1 25 0 2324 79 0 0 chrX 126821730 126822029 -50152111 - AluSx SINE Alu 0 304 6 265 164 41 25 chrX 126822196 126822204 -50151936 + (TA)n Simple_repeat Simple_repeat 2 8 -117 1982 113 21 128 chrX 126822204 126822593 -50151547 - MER7A DNA MER2_type -1 345 1 265 164 41 25 chrX 126822593 126822706 -50151434 + (TA)n Simple_repeat Simple_repeat 8 125 0 282 106 0 0 chrX 126822731 126822778 -50151362 + (GA)n Simple_repeat Simple_repeat 1 47 0 633 276 24 19 chrX 126822984 126823194 -50150946 - MIR SINE MIR -6 256 46 518 254 32 43 chrX 126823629 126823857 -50150283 - MIR SINE MIR -14 248 18 2473 144 51 55 chrX 126823882 126824389 -50149751 + MLT1D LTR MaLR 1 505 0 25 31 0 0 chrX 126825174 126825206 -50148934 + AT_rich Low_complexity Low_complexity 1 32 0 375 272 43 68 chrX 126825219 126825381 -50148759 - MIR SINE MIR -77 185 28 1699 190 0 3 chrX 126827216 126827511 -50146629 - AluJo SINE Alu -14 298 5 255 290 56 0 chrX 126827825 126827932 -50146208 + L2 LINE L2 2626 2738 -576 250 281 16 0 chrX 126827989 126828053 -50146087 + L2 LINE L2 3191 3255 -17 318 198 0 49 chrX 126828542 126828623 -50145517 + L2 LINE L2 3154 3230 -42 28 29 0 0 chrX 126828671 126828706 -50145434 + AT_rich Low_complexity Low_complexity 1 35 0 685 269 96 42 chrX 126828730 126828990 -50145150 + L2 LINE L2 2558 2831 -483 1226 216 13 0 chrX 126829002 126829238 -50144902 + MIR SINE MIR 9 247 -15 332 179 0 0 chrX 126829261 126829328 -50144812 + L2 LINE L2 2845 2911 -402 1240 107 0 6 chrX 126829394 126829563 -50144577 + AluSc SINE Alu 142 309 0 228 381 71 11 chrX 126830083 126830364 -50143776 - L2 LINE L2 -646 2668 2371 181 209 0 23 chrX 126831525 126831568 -50142572 + L2 LINE L2 3179 3220 -93 325 187 37 155 chrX 126831677 126831733 -50142407 + MIR SINE MIR 96 157 -105 2262 130 0 9 chrX 126831733 126832048 -50142092 - AluSx SINE Alu 0 312 1 906 130 8 0 chrX 126832054 126832185 -50141955 - FLAM_C SINE Alu 0 133 2 325 187 37 155 chrX 126832185 126832308 -50141832 + MIR SINE MIR 162 260 -2 395 284 76 10 chrX 126833536 126833696 -50140444 - MIR SINE MIR -54 154 2 411 269 29 0 chrX 126833831 126833935 -50140205 - MIR SINE MIR -32 230 124 2119 101 0 14 chrX 126834273 126834584 -50139556 - AluSq SINE Alu 0 307 1 304 269 74 9 chrX 126834586 126834694 -50139446 + L2 LINE L2 3153 3267 -5 2468 87 0 10 chrX 126836008 126836319 -50137821 + AluSx SINE Alu 1 308 -4 304 177 215 15 chrX 126836323 126836453 -50137687 - L1ME4a LINE L1 0 6121 5966 746 263 109 35 chrX 126836460 126836754 -50137386 - L1ME4a LINE L1 -367 5754 5413 2908 6 0 3 chrX 126836754 126837066 -50137074 - AluYa5 SINE Alu 0 311 1 746 263 109 35 chrX 126837066 126837238 -50136902 - L1ME4a LINE L1 -708 5413 5255 1666 123 105 77 chrX 126837271 126837303 -50136837 - MER46B DNA MER2_type -2495 236 206 2152 131 3 0 chrX 126837303 126837609 -50136531 + AluSx SINE Alu 1 307 -5 1666 123 105 77 chrX 126837609 126837927 -50136213 - MER46B DNA MER2_type -2525 206 1 303 217 100 33 chrX 126837930 126838050 -50136090 - L1MC4 LINE L1 -980 7062 6935 483 194 10 29 chrX 126838061 126838164 -50135976 - L1MC4 LINE L1 0 8042 7942 465 207 0 0 chrX 126838175 126838262 -50135878 - FRAM SINE Alu -23 153 67 1609 148 37 34 chrX 126838570 126838868 -50135272 - AluJo SINE Alu -10 302 4 1164 150 150 47 chrX 126838914 126839069 -50135071 - AluJo SINE Alu 0 302 164 198 0 0 0 chrX 126839069 126839091 -50135049 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1164 150 150 47 chrX 126839091 126839209 -50134931 - AluJo SINE Alu -138 164 1 558 321 75 55 chrX 126839303 126840181 -50133959 - L1M4 LINE L1 -3129 3017 2122 2062 135 0 0 chrX 126841316 126841598 -50132542 - AluSx SINE Alu -30 282 1 723 135 0 9 chrX 126842593 126842704 -50131436 + MLT1B LTR MaLR 1 110 -280 2213 63 0 15 chrX 126842867 126843137 -50131003 - AluY SINE Alu -45 266 1 204 179 0 0 chrX 126843274 126843313 -50130827 + A-rich Low_complexity Low_complexity 1 39 0 2648 135 6 47 chrX 126844303 126844613 -50129527 - L1MB5 LINE L1 -8 6166 5880 2321 105 3 10 chrX 126844613 126844927 -50129213 - AluSx SINE Alu 0 312 1 2648 135 6 47 chrX 126844927 126845082 -50129058 - L1MB5 LINE L1 -294 5880 5720 564 269 137 19 chrX 126845414 126845626 -50128514 - LTR16B LTR ERVL -41 423 187 1124 163 93 45 chrX 126845789 126845987 -50128153 - MLT2C1 LTR ERVL -65 399 212 1466 124 169 0 chrX 126845987 126846277 -50127863 - MER44D DNA MER2_type 0 609 1 1124 163 93 45 chrX 126846277 126846365 -50127775 - MLT2C1 LTR ERVL -252 212 1 438 208 0 59 chrX 126846366 126846467 -50127673 - HERV16 LTR ERVL -2736 2260 2166 2547 302 73 34 chrX 126846469 126848400 -50125740 - HERV16 LTR ERVL -2778 2218 116 681 222 108 21 chrX 126848479 126848673 -50125467 - LTR16B LTR ERVL -2 462 252 361 154 39 77 chrX 126848692 126848796 -50125344 - L1MA7 LINE L1 0 6291 6192 370 321 18 0 chrX 126849344 126849453 -50124687 - HERV16 LTR ERVL -3428 1568 1458 598 260 67 19 chrX 126849895 126850103 -50124037 + LTR40b LTR ERVL 160 377 -85 322 259 58 143 chrX 126850183 126850407 -50123733 - LTR16B LTR ERVL -242 222 18 186 71 0 0 chrX 126850672 126850700 -50123440 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 3790 72 0 19 chrX 126851506 126852018 -50122122 - L1PB1 LINE L1 -2 6149 5648 382 312 128 54 chrX 126852296 126852757 -50121383 - L1ME4a LINE L1 -234 5887 5393 2444 87 3 0 chrX 126852790 126853102 -50121038 - AluSq SINE Alu 0 313 1 749 229 112 0 chrX 126853427 126853615 -50120525 - MER3 DNA MER1_type 0 209 1 195 344 16 0 chrX 126853697 126853761 -50120379 + L2 LINE L2 2990 3054 -218 2226 97 52 30 chrX 126853806 126854136 -50120004 + MER1B DNA MER1_type 1 337 -2 2028 121 16 26 chrX 126854738 126855044 -50119096 - AluSx SINE Alu -9 303 1 259 341 15 15 chrX 126856087 126856219 -50117921 - MER5A DNA MER1_type -50 139 8 349 264 93 50 chrX 126857177 126857317 -50116823 + MIR3 SINE MIR 11 156 -52 211 256 0 0 chrX 126857423 126857466 -50116674 + L2 LINE L2 3214 3256 -16 720 213 50 6 chrX 126858603 126858763 -50115377 + MER5B DNA MER1_type 6 172 -6 866 183 5 48 chrX 126858810 126858996 -50115144 + MER5B DNA MER1_type 1 178 0 2650 48 0 6 chrX 126859002 126859313 -50114827 + AluY SINE Alu 1 309 -2 196 259 0 17 chrX 126859327 126859385 -50114755 + MER5B DNA MER1_type 2 58 -120 1068 195 38 157 chrX 126859422 126860041 -50114099 - L2 LINE L2 0 3313 2772 2354 84 12 47 chrX 126860180 126860524 -50113616 - LTR12 LTR ERV1 -382 332 1 2570 120 46 0 chrX 126861364 126861757 -50112383 - LTR57 LTR ERVL 0 411 1 257 247 102 30 chrX 126861757 126861923 -50112217 + MIR3 SINE MIR 3 186 -22 21 0 0 0 chrX 126861934 126861955 -50112185 + AT_rich Low_complexity Low_complexity 1 21 0 255 211 84 21 chrX 126862161 126862256 -50111884 + MIR SINE MIR 47 147 -115 2402 91 0 3 chrX 126862538 126862846 -50111294 - AluSc SINE Alu -2 307 1 1573 251 94 56 chrX 126863120 126863577 -50110563 + L2 LINE L2 2237 2732 -582 2472 67 0 32 chrX 126863577 126863891 -50110249 - AluSp SINE Alu -5 308 5 1573 251 94 56 chrX 126863891 126864147 -50109993 + L2 LINE L2 2732 2977 -337 200 163 23 0 chrX 126864262 126864305 -50109835 - L2 LINE L2 0 3313 3270 1825 140 36 19 chrX 126864312 126864810 -50109330 - AluSx SINE Alu 0 503 1 1044 256 106 17 chrX 126864810 126865301 -50108839 - L2 LINE L2 -36 3277 2751 587 227 0 38 chrX 126865350 126865482 -50108658 + L2 LINE L2 3183 3309 -4 460 227 133 8 chrX 126865548 126865676 -50108464 + MIR3 SINE MIR 20 163 -45 1113 74 14 0 chrX 126865676 126865824 -50108316 - L1PB1 LINE L1 0 6151 6002 544 119 20 30 chrX 126866904 126867005 -50107135 - L1PA16 LINE L1 -1 6165 6066 555 37 0 37 chrX 126867007 126867076 -50107064 + L1P4 LINE L1 5411 5478 -690 3372 109 2 40 chrX 126867076 126867256 -50106884 - L1MA3 LINE L1 0 7724 7539 2344 105 0 7 chrX 126867256 126867560 -50106580 - AluSx SINE Alu -10 302 1 3372 109 2 40 chrX 126867560 126867950 -50106190 - L1MA3 LINE L1 -185 7539 7176 555 37 0 37 chrX 126867950 126867961 -50106179 + L1P4 LINE L1 5478 5488 -680 2048 113 35 0 chrX 126867980 126868262 -50105878 + AluSx SINE Alu 1 292 -20 6121 101 0 9 chrX 126868274 126869137 -50105003 - L1PA15 LINE L1 0 6165 5311 13826 159 18 5 chrX 126869137 126872135 -50102005 - L1MA3 LINE L1 -520 7204 4166 7903 182 29 12 chrX 126872235 126873672 -50100468 - L1MA3 LINE L1 -6088 1477 17 22 0 0 0 chrX 126873727 126873749 -50100391 + AT_rich Low_complexity Low_complexity 1 22 0 902 74 0 0 chrX 126874283 126874391 -50099749 + AluSc SINE Alu 1 108 -201 985 229 33 5 chrX 126874393 126874607 -50099533 + MLT1A2 LTR MaLR 155 374 0 254 306 204 0 chrX 126874733 126874880 -50099260 + MIR SINE MIR 75 251 -11 448 256 16 16 chrX 126874975 126875096 -50099044 + MIR SINE MIR 28 148 -114 417 182 0 0 chrX 126875194 126875260 -50098880 - MLT2D LTR ERVL -348 66 1 400 273 0 10 chrX 126875476 126875575 -50098565 + MIR SINE MIR 34 131 -131 186 43 0 0 chrX 126875588 126875611 -50098529 + (TAA)n Simple_repeat Simple_repeat 2 24 0 673 321 40 53 chrX 126875661 126876038 -50098102 + L2 LINE L2 2808 3179 -93 543 329 55 12 chrX 126876043 126876298 -50097842 + L2 LINE L2 3017 3282 -31 252 130 99 7 chrX 126876635 126876697 -50097443 - MLT2D LTR ERVL 0 397 345 183 42 0 0 chrX 126876726 126876750 -50097390 + (GA)n Simple_repeat Simple_repeat 1 24 0 2108 168 0 39 chrX 126876772 126877063 -50097077 - MLT2D LTR ERVL -48 366 92 2103 110 30 10 chrX 126877063 126877364 -50096776 + AluSx SINE Alu 1 307 -5 2108 168 0 39 chrX 126877364 126877453 -50096687 - MLT2D LTR ERVL -322 92 1 1826 180 30 6 chrX 126878762 126879128 -50095012 + MLT2B1 LTR ERVL 5 429 -91 346 311 0 0 chrX 126879128 126879218 -50094922 + L1MC4 LINE L1 6614 6703 -1339 270 0 0 0 chrX 126879421 126879451 -50094689 + (TA)n Simple_repeat Simple_repeat 2 31 0 1179 117 0 0 chrX 126879511 126879691 -50094449 + (TA)n Simple_repeat Simple_repeat 1 180 0 290 122 0 0 chrX 126879692 126879733 -50094407 + MLT2B1 LTR ERVL 475 515 0 2123 165 35 60 chrX 126879910 126880389 -50093751 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chrX 126880402 126880424 -50093716 + AT_rich Low_complexity Low_complexity 1 22 0 239 200 12 75 chrX 126880437 126880517 -50093623 - MER74C LTR ERVL -57 403 329 518 314 17 6 chrX 126880519 126880694 -50093446 + MIR3 SINE MIR 25 201 -7 474 238 136 55 chrX 126881237 126881472 -50092668 - MIR SINE MIR 0 262 9 184 146 55 36 chrX 126881506 126881561 -50092579 + GA-rich Low_complexity Low_complexity 5 60 0 534 158 6 165 chrX 126882890 126883054 -50091086 - FLAM_A SINE Alu -4 138 1 679 237 5 37 chrX 126883108 126883196 -50090944 - MIR SINE MIR -21 241 152 2135 111 20 3 chrX 126883196 126883494 -50090646 - AluSx SINE Alu -9 303 1 679 237 5 37 chrX 126883494 126883595 -50090545 - MIR SINE MIR -110 152 58 225 0 0 0 chrX 126885560 126885585 -50088555 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 187 262 0 0 chrX 126885910 126885952 -50088188 - L2 LINE L2 -8 3305 3264 383 281 88 19 chrX 126887015 126887175 -50086965 + MIR SINE MIR 20 190 -72 469 231 105 65 chrX 126887175 126887422 -50086718 - MIR SINE MIR -1 261 5 297 185 62 12 chrX 126887447 126887528 -50086612 + MER21B LTR ERV1 400 484 -379 814 115 53 0 chrX 126887650 126887763 -50086377 - FRAM SINE Alu -37 139 21 186 234 13 91 chrX 126888350 126888427 -50085713 + L2 LINE L2 437 507 -2807 407 261 27 0 chrX 126888579 126888690 -50085450 - MIR SINE MIR -2 260 147 204 311 14 0 chrX 126889260 126889334 -50084806 + A-rich Low_complexity Low_complexity 5 79 0 294 29 0 0 chrX 126891135 126891170 -50082970 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chrX 126891484 126891507 -50082633 + AT_rich Low_complexity Low_complexity 1 23 0 521 244 0 39 chrX 126891816 126891943 -50082197 + L2 LINE L2 3192 3313 0 387 278 21 35 chrX 126892055 126892096 -50082044 + MIR3 SINE MIR 19 59 -149 2123 93 6 56 chrX 126892096 126892419 -50081721 + AluSg SINE Alu 1 307 -3 387 278 21 35 chrX 126892419 126892521 -50081619 + MIR3 SINE MIR 59 160 -48 352 216 151 14 chrX 126892598 126892737 -50081403 + HAL1b LINE L1 1191 1348 0 1097 91 14 0 chrX 126892907 126893050 -50081090 + BC200 scRNA scRNA 1 145 -55 1973 251 80 100 chrX 126893201 126894390 -50079750 + L2 LINE L2 87 1251 -2063 2563 233 42 16 chrX 126894405 126894797 -50079343 + L2 LINE L2 2230 2651 -663 1928 170 35 80 chrX 126894797 126895286 -50078854 + MLT1C LTR MaLR 1 467 0 2563 233 42 16 chrX 126895286 126895600 -50078540 + L2 LINE L2 2651 2955 -359 346 271 188 0 chrX 126895806 126895950 -50078190 + MIR SINE MIR 92 262 0 2083 125 20 0 chrX 126896437 126896742 -50077398 + AluSx SINE Alu 1 311 -1 1478 114 160 34 chrX 126897103 126897365 -50076775 - AluJo SINE Alu -6 296 2 275 316 42 0 chrX 126897928 126898023 -50076117 - L1MC4 LINE L1 -167 7875 7777 523 200 57 71 chrX 126898503 126898772 -50075368 + MLT1C LTR MaLR 16 371 -122 2817 143 11 9 chrX 126898779 126899219 -50074921 - MER83 LTR ERV1 -7 441 1 31118 97 14 27 chrX 126899220 126903538 -50070602 - MER83-int LTR ERV1 -11 4274 12 2327 151 35 55 chrX 126903538 126903909 -50070231 - MER83 LTR ERV1 0 448 86 2046 137 37 0 chrX 126903909 126904208 -50069932 + AluSx SINE Alu 3 312 0 2327 151 35 55 chrX 126904208 126904293 -50069847 - MER83 LTR ERV1 -362 86 1 776 148 0 0 chrX 126904293 126904408 -50069732 + MLT1C LTR MaLR 351 465 -2 2674 202 26 41 chrX 126904410 126904898 -50069242 + MLT1C-int LTR MaLR 1 590 -781 1874 181 0 7 chrX 126904898 126905202 -50068938 + AluJb SINE Alu 1 302 -10 2674 202 26 41 chrX 126905202 126905508 -50068632 + MLT1C-int LTR MaLR 590 899 -472 1839 187 69 19 chrX 126908586 126908678 -50065462 + MLT1C-int LTR MaLR 983 1069 -302 2110 115 0 30 chrX 126908678 126908982 -50065158 - AluSx SINE Alu -17 295 1 1839 187 69 19 chrX 126908982 126909253 -50064887 + MLT1C-int LTR MaLR 1069 1364 -7 2024 194 32 36 chrX 126909265 126909734 -50064406 + MLT1C LTR MaLR 1 467 0 210 250 18 0 chrX 126910090 126910146 -50063994 + GA-rich Low_complexity Low_complexity 2 58 0 291 290 80 22 chrX 126910370 126910508 -50063632 - L1ME3A LINE L1 -289 5881 5736 * 4009 213 43 54 chrX 126910503 126910646 -50063494 - L1MDa LINE L1 -3599 2941 2798 2571 70 0 3 chrX 126910646 126910958 -50063182 - AluY SINE Alu 0 311 1 4009 213 43 54 chrX 126910958 126911551 -50062589 - L1MDa LINE L1 -3742 2798 2221 1048 224 0 0 chrX 126911551 126911756 -50062384 + L1PA15 LINE L1 5960 6164 -1 4009 213 43 54 chrX 126911756 126912291 -50061849 - L1MDa LINE L1 -4319 2221 1682 688 11 22 0 chrX 126912291 126912380 -50061760 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 305 252 34 84 chrX 126912439 126912558 -50061582 + L2 LINE L2 3199 3311 -2 245 253 27 0 chrX 126912581 126912656 -50061484 + GA-rich Low_complexity Low_complexity 2 78 0 410 0 271 0 chrX 126913661 126913720 -50060420 + MADE1 DNA Mariner 1 75 -5 43930 32 21 1 chrX 126913929 126919959 -50054181 - L1HS LINE L1 0 6155 3 378 0 0 0 chrX 126921006 126921048 -50053092 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2049 146 0 0 chrX 126922208 126922541 -50051599 - AluSx SINE Alu 0 312 1 1773 172 7 7 chrX 126923507 126923809 -50050331 - AluJb SINE Alu -10 302 1 4702 52 42 15 chrX 126923917 126924923 -50049217 + MER11A LTR ERVK 1 1266 0 2358 92 3 0 chrX 126925123 126925415 -50048725 - AluSp SINE Alu -20 293 1 33 35 0 17 chrX 126926436 126926474 -50047666 + AT_rich Low_complexity Low_complexity 1 39 -18 1712 192 0 16 chrX 126926474 126926781 -50047359 - AluJo SINE Alu -10 302 1 33 35 0 17 chrX 126926781 126926800 -50047340 + AT_rich Low_complexity Low_complexity 39 57 0 243 88 0 0 chrX 126927122 126927156 -50046984 + (CA)n Simple_repeat Simple_repeat 2 35 0 242 56 28 0 chrX 126927302 126927338 -50046802 + (TC)n Simple_repeat Simple_repeat 1 37 0 228 149 0 0 chrX 126927338 126927385 -50046755 + (GA)n Simple_repeat Simple_repeat 1 47 0 327 283 12 30 chrX 126927390 126927556 -50046584 + GA-rich Low_complexity Low_complexity 2 164 0 316 312 6 35 chrX 126927612 126927785 -50046355 + GA-rich Low_complexity Low_complexity 1 168 0 2244 107 0 10 chrX 126927977 126928277 -50045863 - AluSx SINE Alu -15 297 1 312 268 0 56 chrX 126928336 126928515 -50045625 + A-rich Low_complexity Low_complexity 4 172 0 183 139 0 0 chrX 126928704 126928740 -50045400 + (GA)n Simple_repeat Simple_repeat 2 37 0 201 311 14 0 chrX 126928760 126928834 -50045306 + GA-rich Low_complexity Low_complexity 2 76 0 216 178 0 0 chrX 126928883 126928928 -50045212 + (CAGG)n Simple_repeat Simple_repeat 2 46 0 416 89 0 0 chrX 126928957 126929013 -50045127 - Alu SINE Alu -253 57 2 855 164 7 7 chrX 126929046 126929186 -50044954 - MER87 LTR ERV1 -401 140 1 231 308 0 0 chrX 126929213 126929291 -50044849 + GA-rich Low_complexity Low_complexity 2 79 0 204 180 0 40 chrX 126929435 126929485 -50044655 + GA-rich Low_complexity Low_complexity 3 50 0 233 257 27 14 chrX 126929601 126929675 -50044465 + GA-rich Low_complexity Low_complexity 3 77 0 254 256 47 0 chrX 126929825 126929911 -50044229 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 198 71 0 0 chrX 126930018 126930046 -50044094 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 244 347 0 35 chrX 126930086 126930259 -50043881 + GA-rich Low_complexity Low_complexity 2 168 0 240 167 0 0 chrX 126930298 126930334 -50043806 + Alu SINE Alu 1 36 -263 413 138 0 0 chrX 126930334 126930399 -50043741 + AluJ/FRAM SINE Alu 230 294 -18 641 24 12 0 chrX 126930493 126930576 -50043564 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 219 139 0 0 chrX 126930730 126930766 -50043374 + (GGAA)n Simple_repeat Simple_repeat 2 37 0 215 295 0 0 chrX 126930949 126931010 -50043130 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 265 132 0 0 chrX 126931021 126931059 -50043081 - Alu SINE Alu -265 38 1 2508 84 0 0 chrX 126931237 126931548 -50042592 + AluSx SINE Alu 1 311 -1 198 238 0 41 chrX 126931649 126931771 -50042369 + GA-rich Low_complexity Low_complexity 1 117 0 1792 130 91 4 chrX 126931780 126932056 -50042084 + AluSg SINE Alu 5 304 -6 206 227 0 15 chrX 126932139 126932205 -50041935 + GA-rich Low_complexity Low_complexity 3 67 0 912 101 3 40 chrX 126932419 126932950 -50041190 + (GGAA)n Simple_repeat Simple_repeat 3 333 0 484 270 0 38 chrX 126933067 126933252 -50040888 + GA-rich Low_complexity Low_complexity 2 179 0 253 183 14 14 chrX 126933320 126933391 -50040749 + GA-rich Low_complexity Low_complexity 4 74 0 225 254 0 16 chrX 126933415 126933463 -50040677 + GA-rich Low_complexity Low_complexity 1 48 -369 2443 65 0 10 chrX 126933463 126933807 -50040333 + AluY SINE Alu 1 311 0 225 254 0 16 chrX 126933807 126933839 -50040301 + GA-rich Low_complexity Low_complexity 48 417 0 212 242 12 55 chrX 126933943 126934108 -50040032 + GA-rich Low_complexity Low_complexity 3 160 0 180 200 0 0 chrX 126934223 126934263 -50039877 + GA-rich Low_complexity Low_complexity 2 41 0 1064 155 110 82 chrX 126934315 126934560 -50039580 + AluJo SINE Alu 49 300 -12 302 240 11 22 chrX 126934916 126935095 -50039045 + GA-rich Low_complexity Low_complexity 1 177 0 305 206 11 0 chrX 126935251 126935343 -50038797 + (TAGA)n Simple_repeat Simple_repeat 4 96 0 351 262 33 49 chrX 126935364 126935596 -50038544 + GA-rich Low_complexity Low_complexity 1 228 0 200 111 28 0 chrX 126935685 126935721 -50038419 + GA-rich Low_complexity Low_complexity 4 40 0 227 170 0 19 chrX 126935827 126935880 -50038260 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2099 107 14 10 chrX 126935996 126936285 -50037855 + AluJb SINE Alu 1 290 -22 224 163 23 0 chrX 126936327 126936370 -50037770 + GA-rich Low_complexity Low_complexity 4 47 0 227 276 0 0 chrX 126936519 126936577 -50037563 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2275 88 0 20 chrX 126936628 126936922 -50037218 + AluSq SINE Alu 17 304 -9 198 233 0 0 chrX 126936997 126937057 -50037083 + GA-rich Low_complexity Low_complexity 1 60 0 284 264 22 11 chrX 126937099 126937190 -50036950 + GA-rich Low_complexity Low_complexity 1 92 0 2073 89 3 50 chrX 126937486 126937788 -50036352 + AluSc SINE Alu 1 288 -21 324 178 40 0 chrX 126937867 126937968 -50036172 + GA-rich Low_complexity Low_complexity 2 106 0 186 143 0 0 chrX 126938043 126938078 -50036062 + (GGAA)n Simple_repeat Simple_repeat 1 35 0 198 191 0 0 chrX 126938193 126938235 -50035905 + GA-rich Low_complexity Low_complexity 3 44 0 243 170 0 0 chrX 126938399 126938446 -50035694 + GA-rich Low_complexity Low_complexity 2 48 0 446 314 12 6 chrX 126938483 126938652 -50035488 + GA-rich Low_complexity Low_complexity 3 172 0 1786 146 10 27 chrX 126938721 126939016 -50035124 + AluSx SINE Alu 8 297 -15 21 82 0 0 chrX 126939749 126939798 -50034342 + AT_rich Low_complexity Low_complexity 1 49 0 180 0 0 0 chrX 126940558 126940578 -50033562 + (T)n Simple_repeat Simple_repeat 1 20 0 1104 171 68 0 chrX 126942244 126942449 -50031691 - MER20 DNA MER1_type 0 219 1 572 184 191 8 chrX 126943631 126943774 -50030366 + MER5A DNA MER1_type 8 189 0 2831 239 43 23 chrX 126944998 126945840 -50028300 + L1ME1 LINE L1 5303 6161 -5 351 44 0 0 chrX 126946195 126946240 -50027900 + (ATG)n Simple_repeat Simple_repeat 3 47 0 218 244 0 0 chrX 126946245 126946290 -50027850 - MIR SINE MIR -10 252 208 322 288 55 106 chrX 126946448 126947024 -50027116 - L2 LINE L2 -200 3072 2474 243 57 0 0 chrX 126947025 126947035 -50027105 + (ATG)n Simple_repeat Simple_repeat 1 10 -25 2385 101 55 0 chrX 126947035 126947380 -50026760 - THE1B LTR MaLR 0 364 1 243 57 0 0 chrX 126947380 126947404 -50026736 + (ATG)n Simple_repeat Simple_repeat 9 35 0 221 0 35 0 chrX 126947404 126947433 -50026707 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3478 72 28 19 chrX 126948855 126949383 -50024757 - L1MA1 LINE L1 0 6302 5770 259 222 0 0 chrX 126950781 126950826 -50023314 - L2 LINE L2 -12 3260 3216 745 357 80 34 chrX 126951810 126952327 -50021813 - L2 LINE L2 0 3272 2736 2071 104 38 0 chrX 126952327 126952616 -50021524 + AluSg SINE Alu 1 300 -10 745 357 80 34 chrX 126952616 126952660 -50021480 - L2 LINE L2 -536 2736 2695 770 265 46 9 chrX 126952708 126952927 -50021213 - MIR SINE MIR 0 262 36 663 314 47 65 chrX 126952962 126953344 -50020796 - L2 LINE L2 -680 2634 2260 369 331 138 24 chrX 126953382 126953875 -50020265 - L1 LINE L1 -3156 2990 2442 3013 182 25 7 chrX 126953940 126954494 -50019646 - MLT1F1 LTR MaLR -3 564 1 362 331 108 25 chrX 126955617 126955930 -50018210 + L2 LINE L2 2720 3079 -193 266 98 20 59 chrX 126956001 126956052 -50018088 + L2 LINE L2 3261 3309 -4 270 0 0 0 chrX 126956058 126956088 -50018052 + (TA)n Simple_repeat Simple_repeat 2 31 0 2162 123 0 3 chrX 126956185 126956485 -50017655 - AluSx SINE Alu -9 303 5 414 198 31 0 chrX 126957653 126957749 -50016391 + L1MB4 LINE L1 6060 6158 -22 186 43 0 0 chrX 126958199 126958222 -50015918 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2981 65 0 5 chrX 126958261 126958648 -50015492 - L1PA7 LINE L1 -1 6153 5769 7723 25 0 0 chrX 126958651 126959934 -50014206 - L1PA3 LINE L1 0 6155 4873 1456 228 58 22 chrX 126959936 126960352 -50013788 + LTR47B LTR ERVL 13 443 0 2736 127 14 28 chrX 126960900 126961332 -50012808 + MSTB LTR MaLR 1 426 0 2519 53 3 7 chrX 126962218 126962522 -50011618 + AluSq SINE Alu 3 305 -8 5575 78 19 41 chrX 126964299 126965176 -50008964 - L1PA13 LINE L1 0 6163 5306 1045 139 15 5 chrX 126965209 126965411 -50008729 + L1P LINE L1 5116 5319 -827 553 227 49 6 chrX 126967696 126967859 -50006281 + L1M4 LINE L1 4178 4347 -1799 1772 195 0 3 chrX 126968074 126968376 -50005764 + AluJo SINE Alu 1 301 -11 519 17 0 0 chrX 126970930 126970990 -50003150 + (TTTTA)n Simple_repeat Simple_repeat 2 61 0 841 168 0 0 chrX 126970996 126971121 -50003019 - FLAM_C SINE Alu -8 125 1 2216 100 0 0 chrX 126973009 126973290 -50000850 - AluSx SINE Alu -27 285 5 401 248 9 9 chrX 126973317 126973426 -50000714 - MARNA DNA Mariner -330 256 148 2498 121 17 110 chrX 126973629 126974167 -49999973 - LTR45B LTR ERV1 0 489 2 342 178 14 0 chrX 126974237 126974310 -49999830 - MER116 DNA Mariner -6 74 1 1731 160 96 3 chrX 126975773 126976116 -49998024 + MSTA LTR MaLR 54 428 0 1567 113 0 19 chrX 126976751 126976964 -49997176 + AluSg/x SINE Alu 84 292 -18 1727 155 10 7 chrX 126979178 126979468 -49994672 + AluJb SINE Alu 1 291 -21 2632 127 28 21 chrX 126981595 126982020 -49992120 - MSTA LTR MaLR 0 428 1 42322 40 2 0 chrX 126983683 126989832 -49984308 + L1PA4 LINE L1 3 6159 0 2086 137 0 3 chrX 126990589 126990882 -49983258 + AluSx SINE Alu 2 293 -19 2522 57 0 0 chrX 126991504 126991803 -49982337 + AluY SINE Alu 1 299 -12 425 128 26 0 chrX 126991803 126991881 -49982259 + GA-rich Low_complexity Low_complexity 1 80 0 240 35 0 0 chrX 126993657 126993686 -49980454 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1874 68 0 0 chrX 126993688 126993907 -49980233 - AluSc SINE Alu -32 277 59 1451 133 35 4 chrX 127193907 127194162 -49779978 - MLT1A1 LTR MaLR -102 263 1 5044 75 28 0 chrX 127194167 127194847 -49779293 + L1PA11 LINE L1 5476 6174 0 2171 122 65 14 chrX 127194849 127195283 -49778857 + L1MCa LINE L1 1187 1642 -4784 395 113 0 0 chrX 127195278 127195349 -49778791 + L1MCa LINE L1 1863 1933 -4493 * 2507 79 7 0 chrX 127195349 127195654 -49778486 + AluSq SINE Alu 1 307 -6 7412 130 21 6 chrX 127195657 127196883 -49777257 + Tigger1 DNA MER2_type 1167 2411 -7 3141 211 30 11 chrX 127196900 127198229 -49775911 + L1MCa LINE L1 2041 3392 -3034 4618 125 5 37 chrX 127198231 127199017 -49775123 + L1MC1 LINE L1 5573 6333 0 21 0 0 0 chrX 127201928 127201949 -49772191 + AT_rich Low_complexity Low_complexity 1 21 0 2132 79 68 0 chrX 127202087 127202366 -49771774 + AluSp SINE Alu 1 298 -15 2196 130 69 47 chrX 127202494 127202680 -49771460 + MSTB1 LTR MaLR 1 182 -250 2328 95 10 0 chrX 127202680 127202986 -49771154 + AluSc SINE Alu 1 309 0 2196 130 69 47 chrX 127202986 127203222 -49770918 + MSTB1 LTR MaLR 182 432 0 183 42 0 0 chrX 127205888 127205912 -49768228 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2231 166 75 16 chrX 127206501 127206942 -49767198 + MLT1C LTR MaLR 1 467 0 534 293 63 11 chrX 127207799 127207973 -49766167 + MER5A DNA MER1_type 6 188 -1 252 86 0 0 chrX 127209402 127209437 -49764703 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 365 0 0 chrX 127209446 127209509 -49764631 + L2 LINE L2 3192 3254 -18 * 378 296 70 40 chrX 127209498 127209544 -49764596 - MIR SINE MIR -57 205 162 2152 111 0 10 chrX 127209544 127209850 -49764290 - AluSp SINE Alu -10 303 1 378 296 70 40 chrX 127209850 127210002 -49764138 - MIR SINE MIR -100 162 1 2568 247 12 42 chrX 127211077 127211930 -49762210 + L1ME LINE L1 25 851 -5219 578 153 17 0 chrX 127212013 127212131 -49762009 - L1ME LINE L1 -5237 833 714 1216 266 70 36 chrX 127212135 127212877 -49761263 + L1ME LINE L1 895 1661 -4600 2106 144 7 0 chrX 127215102 127215401 -49758739 - AluJb SINE Alu -11 301 1 228 111 0 0 chrX 127216593 127216629 -49757511 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 281 77 0 0 chrX 127217046 127217085 -49757055 + MADE1 DNA Mariner 42 80 0 2333 92 3 3 chrX 127217161 127217465 -49756675 + AluSx SINE Alu 1 304 -8 193 341 207 0 chrX 127217775 127217857 -49756283 + L2 LINE L2 3160 3258 -14 327 292 11 0 chrX 127218208 127218297 -49755843 - MIR SINE MIR -109 153 64 271 331 111 0 chrX 127218301 127218400 -49755740 + MIR SINE MIR 38 146 -66 597 235 98 39 chrX 127218465 127218669 -49755471 - MIR SINE MIR -46 216 1 180 0 0 0 chrX 127221970 127221990 -49752150 + (TG)n Simple_repeat Simple_repeat 1 20 0 219 133 33 17 chrX 127221990 127222050 -49752090 + GA-rich Low_complexity Low_complexity 2 62 0 466 315 51 48 chrX 127222473 127222746 -49751394 - L3b LINE CR1 -95 1488 1215 204 326 58 0 chrX 127223412 127223498 -49750642 + MIR3 SINE MIR 110 200 -8 350 151 14 0 chrX 127224129 127224202 -49749938 + GA-rich Low_complexity Low_complexity 1 74 0 393 277 87 54 chrX 127224889 127225073 -49749067 - MIR SINE MIR -66 196 7 3376 229 65 30 chrX 127225102 127226153 -49747987 + L1MEc LINE L1 35 1121 -5275 532 218 45 101 chrX 127226158 127226466 -49747674 + L1PBb LINE L1 776 1066 -5783 4270 218 85 6 chrX 127226668 127227843 -49746297 + L1PBb LINE L1 1080 2441 -4407 1533 174 44 0 chrX 127227919 127228212 -49745928 + L1PB4 LINE L1 5851 6156 0 1157 268 135 3 chrX 127228212 127228527 -49745613 + L1MEc LINE L1 1113 1385 -5011 6411 19 1 4 chrX 127228527 127229271 -49744869 - L1PA3 LINE L1 0 6155 5414 1157 268 135 3 chrX 127229271 127229549 -49744591 + L1MEc LINE L1 1385 1784 -4612 553 274 7 40 chrX 127229550 127229824 -49744316 + L1ME1 LINE L1 5898 6162 -4 220 345 100 50 chrX 127230640 127230860 -49743280 + L2 LINE L2 2550 2780 -534 205 416 20 0 chrX 127231271 127231372 -49742768 + L2 LINE L2 3169 3271 -1 1755 81 201 40 chrX 127231447 127231718 -49742422 + MSTC LTR MaLR 54 387 -41 2398 91 0 0 chrX 127231718 127232015 -49742125 + AluSq SINE Alu 2 298 -15 1755 81 201 40 chrX 127232015 127232066 -49742074 + MSTC LTR MaLR 387 428 0 1047 301 142 20 chrX 127232116 127232778 -49741362 + L2 LINE L2 2554 3311 -2 535 289 96 85 chrX 127232779 127233311 -49740829 - L2 LINE L2 -9 3263 2724 299 235 59 78 chrX 127235152 127235184 -49738956 - MIR3 SINE MIR -23 185 154 607 181 31 109 chrX 127235184 127235377 -49738763 - MER5B DNA MER1_type 0 178 1 299 235 59 78 chrX 127235377 127235446 -49738694 - MIR3 SINE MIR -54 154 86 483 330 64 26 chrX 127235459 127235692 -49738448 + MIR SINE MIR 20 261 -1 205 205 0 26 chrX 127235715 127235754 -49738386 - MIR SINE MIR -150 58 21 2246 76 0 0 chrX 127236251 127236526 -49737614 + AluY SINE Alu 37 311 0 342 287 0 57 chrX 127237869 127237991 -49736149 - MIR SINE MIR -146 116 2 559 260 23 51 chrX 127238116 127238317 -49735823 - MIR3 SINE MIR -7 201 5 412 245 32 0 chrX 127238358 127238452 -49735688 - L2 LINE L2 -1011 2303 2207 652 216 0 0 chrX 127238530 127238646 -49735494 - L2 LINE L2 -6 3307 3192 1437 148 0 0 chrX 127238678 127238888 -49735252 + AluJb SINE Alu 85 294 -18 1976 263 25 14 chrX 127238899 127239540 -49734600 - L2 LINE L2 -192 3121 2472 189 333 0 0 chrX 127239960 127240011 -49734129 - L3 LINE CR1 -4 1573 1523 2609 134 29 2 chrX 127240057 127240474 -49733666 + MSTA LTR MaLR 1 428 0 189 397 16 0 chrX 127243157 127243283 -49730857 + L2 LINE L2 2784 2911 -403 360 276 204 20 chrX 127243293 127243489 -49730651 + MIR SINE MIR 1 232 -30 315 299 103 8 chrX 127243495 127243612 -49730528 + L2 LINE L2 2926 3053 -219 254 231 0 31 chrX 127244234 127244299 -49729841 - Zaphod DNA AcHobo -3968 63 1 249 33 0 0 chrX 127244929 127244959 -49729181 + (CA)n Simple_repeat Simple_repeat 2 31 0 289 242 0 44 chrX 127245012 127245103 -49729037 + MIR SINE MIR 65 151 -111 225 238 0 32 chrX 127245103 127245166 -49728974 + MIR SINE MIR 110 170 -92 242 211 113 14 chrX 127245287 127245358 -49728782 - L2 LINE L2 0 3272 3195 22 56 0 0 chrX 127245851 127245887 -49728253 + AT_rich Low_complexity Low_complexity 1 36 0 2186 101 3 29 chrX 127246493 127246801 -49727339 - AluSx SINE Alu -12 300 1 270 297 129 20 chrX 127247105 127247206 -49726934 - L2 LINE L2 -40 3232 3121 697 281 89 13 chrX 127247235 127247459 -49726681 - MIR SINE MIR -14 248 8 1541 268 65 19 chrX 127247589 127248112 -49726028 + MLT1H1 LTR MaLR 1 547 -8 1954 98 0 4 chrX 127248503 127248757 -49725383 - AluSx SINE Alu -1 311 59 440 243 160 12 chrX 127248803 127248972 -49725168 - MIR SINE MIR 0 262 69 29 28 0 0 chrX 127250914 127250950 -49723190 + AT_rich Low_complexity Low_complexity 1 36 0 240 330 37 28 chrX 127251072 127251181 -49722959 + L2 LINE L2 2945 3054 -218 403 211 37 37 chrX 127251522 127251631 -49722509 + L2 LINE L2 3205 3313 0 1167 206 34 0 chrX 127253842 127254075 -49720065 - MIR SINE MIR 0 262 22 1057 194 76 30 chrX 127254605 127254842 -49719298 - MIR SINE MIR -14 248 1 34 89 0 0 chrX 127255251 127255341 -49718799 + AT_rich Low_complexity Low_complexity 1 90 0 624 250 136 0 chrX 127255419 127255647 -49718493 - MIR SINE MIR -2 260 2 414 197 197 0 chrX 127256124 127256246 -49717894 - MER5A DNA MER1_type -3 186 41 439 267 91 30 chrX 127256364 127256529 -49717611 - L3b LINE CR1 -127 1456 1282 180 111 0 0 chrX 127256556 127256583 -49717557 + (TATG)n Simple_repeat Simple_repeat 2 28 0 254 95 24 0 chrX 127257408 127257450 -49716690 + (TC)n Simple_repeat Simple_repeat 2 44 0 193 314 0 58 chrX 127257715 127257801 -49716339 - L2 LINE L2 -55 3217 3137 582 246 40 63 chrX 127257858 127258033 -49716107 - MIR SINE MIR -11 251 81 239 233 17 17 chrX 127258990 127259050 -49715090 - MIR3 SINE MIR -11 197 138 189 0 0 0 chrX 127259176 127259197 -49714943 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 185 294 141 0 chrX 127259528 127259613 -49714527 + L2 LINE L2 2948 3044 -228 1722 169 65 9 chrX 127259613 127259938 -49714202 + MER61A LTR ERV1 1 343 0 301 275 69 118 chrX 127260027 127260416 -49713724 - L2 LINE L2 -2 3311 2942 267 372 90 6 chrX 127260429 127260585 -49713555 + L2 LINE L2 3103 3271 -1 390 21 0 0 chrX 127261420 127261467 -49712673 + (CA)n Simple_repeat Simple_repeat 2 48 0 216 356 14 14 chrX 127261714 127261787 -49712353 + MIR SINE MIR 12 84 -178 455 298 98 29 chrX 127261844 127262049 -49712091 - L2 LINE L2 -1 3312 3094 365 264 66 0 chrX 127262057 127262163 -49711977 + MIR SINE MIR 138 250 -12 206 380 0 0 chrX 127262187 127262258 -49711882 - L2 LINE L2 -73 3199 3129 486 326 0 7 chrX 127262273 127262414 -49711726 - MIR SINE MIR -120 142 3 225 329 24 35 chrX 127262534 127262619 -49711521 + L2 LINE L2 3189 3272 0 2187 136 3 3 chrX 127263268 127263578 -49710562 + AluSx SINE Alu 1 310 -2 2086 39 24 0 chrX 127263684 127263939 -49710201 - L1PA7 LINE L1 0 6154 5894 1182 224 24 0 chrX 127263973 127264227 -49709913 - MIR SINE MIR 0 262 3 185 222 67 0 chrX 127264239 127264284 -49709856 - MIR3 SINE MIR -3 205 158 1162 135 21 5 chrX 127264329 127264521 -49709619 + MER20 DNA MER1_type 25 219 0 7778 203 102 13 chrX 127264712 127264751 -49709389 - L1M3a LINE L1 -4802 2225 2191 207 0 0 0 chrX 127264751 127264774 -49709366 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7778 203 102 13 chrX 127264774 127266771 -49707369 - L1M3a LINE L1 -4836 2191 1 281 87 0 22 chrX 127266865 127266911 -49707229 + (CA)n Simple_repeat Simple_repeat 2 46 0 726 171 91 40 chrX 127268376 127268551 -49705589 + L2 LINE L2 3125 3308 -5 613 279 71 33 chrX 127268634 127268874 -49705266 - MIR SINE MIR -6 256 8 244 294 154 28 chrX 127269075 127269218 -49704922 + MIR3 SINE MIR 33 193 -15 308 215 15 15 chrX 127269629 127269694 -49704446 - L2 LINE L2 0 3313 3249 243 276 48 67 chrX 127269744 127269849 -49704291 + MIR SINE MIR 96 198 -64 21 0 0 0 chrX 127270133 127270154 -49703986 + AT_rich Low_complexity Low_complexity 1 21 0 1677 155 82 20 chrX 127271443 127271785 -49702355 - MLT1A1 LTR MaLR 0 365 3 324 252 54 85 chrX 127274002 127274132 -49700008 + MIR SINE MIR 58 182 -73 195 100 0 0 chrX 127274785 127274815 -49699325 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chrX 127274971 127275006 -49699134 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chrX 127275097 127275124 -49699016 + AT_rich Low_complexity Low_complexity 1 27 0 227 356 89 7 chrX 127275227 127275373 -49698767 + MIR SINE MIR 8 165 -97 22 35 0 0 chrX 127276331 127276360 -49697780 + AT_rich Low_complexity Low_complexity 1 29 0 331 259 201 14 chrX 127276967 127277110 -49697030 - MIR3 SINE MIR -21 187 8 1973 172 37 34 chrX 127277110 127277660 -49696480 - MLT2A2 LTR ERVL 0 554 1 306 120 20 0 chrX 127278317 127278367 -49695773 + MER5B DNA MER1_type 3 53 -125 768 173 0 8 chrX 127278381 127278514 -49695626 - FLAM_C SINE Alu -11 132 1 419 217 18 151 chrX 127278514 127278680 -49695460 + MER5B DNA MER1_type 35 178 0 716 322 25 25 chrX 127280359 127280645 -49693495 + L2 LINE L2 2453 2738 -576 204 40 0 0 chrX 127280645 127280670 -49693470 + (CA)n Simple_repeat Simple_repeat 2 26 0 673 354 16 8 chrX 127280744 127280990 -49693150 - L2 LINE L2 -214 3058 2811 378 292 143 0 chrX 127283447 127283608 -49690532 - MIR SINE MIR -11 251 68 198 228 88 18 chrX 127283616 127283673 -49690467 - MIR SINE MIR -171 91 31 961 150 0 111 chrX 127283673 127283829 -49690311 + MER3 DNA MER1_type 1 124 -85 2397 82 0 3 chrX 127283829 127284135 -49690005 - AluSg SINE Alu -5 305 1 961 150 0 111 chrX 127284135 127284212 -49689928 + MER3 DNA MER1_type 124 208 -1 2749 83 13 8 chrX 127284227 127284613 -49689527 - L1PA13 LINE L1 0 6163 5776 376 59 0 0 chrX 127284615 127284666 -49689474 + L1PA13 LINE L1 5723 5773 -392 350 237 0 0 chrX 127285009 127285085 -49689055 - Tigger5 DNA MER2_type 0 2323 2248 499 206 19 35 chrX 127285087 127285223 -49688917 - Tigger5 DNA MER2_type -2130 193 3 258 326 0 61 chrX 127285250 127285382 -49688758 - L2 LINE L2 -5 3267 3144 828 134 45 0 chrX 127285524 127285658 -49688482 + BC200 scRNA scRNA 1 140 -60 297 179 40 26 chrX 127285663 127285741 -49688399 + MIR SINE MIR 76 153 -63 186 338 90 15 chrX 127285864 127285997 -49688143 - L2 LINE L2 -213 3059 2917 433 245 238 14 chrX 127286056 127286199 -49687941 + MER5A DNA MER1_type 9 183 -6 300 322 33 41 chrX 127288189 127288310 -49685830 + L3 LINE CR1 1458 1577 0 458 333 0 0 chrX 127289218 127289350 -49684790 - MIR SINE MIR 0 262 131 6776 16 0 0 chrX 127289469 127290240 -49683900 + L1PA3 LINE L1 5380 6150 -5 394 279 161 0 chrX 127290674 127290835 -49683305 - MIR SINE MIR -75 187 1 23 0 0 0 chrX 127291274 127291297 -49682843 + AT_rich Low_complexity Low_complexity 1 23 0 2433 74 3 0 chrX 127291301 127291599 -49682541 - AluSp SINE Alu -9 304 6 2201 123 0 0 chrX 127291760 127292061 -49682079 + AluSx SINE Alu 1 301 -11 415 294 25 131 chrX 127293145 127293505 -49680635 - L2 LINE L2 -16 3256 2935 712 288 59 21 chrX 127294187 127294423 -49679717 + MIR SINE MIR 8 252 -10 234 0 0 0 chrX 127294841 127294867 -49679273 + (CAA)n Simple_repeat Simple_repeat 2 27 0 257 345 63 24 chrX 127295873 127296160 -49677980 + L2 LINE L2 1812 2109 -1205 * 352 234 241 25 chrX 127296138 127296296 -49677844 - MIR SINE MIR -70 192 1 205 384 39 26 chrX 127296455 127296687 -49677453 + L2 LINE L2 2814 3048 -224 197 231 0 0 chrX 127296886 127296925 -49677215 + L2 LINE L2 3264 3302 -11 234 335 157 25 chrX 127298240 127298437 -49675703 + L3b LINE CR1 1273 1495 -88 439 304 44 15 chrX 127299097 127299138 -49675002 - MIR3 SINE MIR -14 194 156 1834 133 41 24 chrX 127299138 127299431 -49674709 - AluJb SINE Alu -14 298 1 439 304 44 15 chrX 127299431 127299524 -49674616 - MIR3 SINE MIR -52 156 56 2486 136 62 7 chrX 127299941 127300347 -49673793 - MSTA LTR MaLR 0 428 1 206 299 9 65 chrX 127300626 127300733 -49673407 + MIR SINE MIR 46 146 -116 25 0 0 0 chrX 127301229 127301254 -49672886 + AT_rich Low_complexity Low_complexity 1 25 0 1813 127 7 0 chrX 127301257 127301532 -49672608 - AluJo SINE Alu -19 293 17 832 254 80 27 chrX 127302076 127302300 -49671840 - MIR SINE MIR -2 260 25 362 253 53 11 chrX 127302306 127302401 -49671739 + MER5B DNA MER1_type 80 178 0 26 0 0 0 chrX 127302840 127302866 -49671274 + AT_rich Low_complexity Low_complexity 1 26 0 445 303 51 46 chrX 127303100 127303295 -49670845 - MIR SINE MIR -14 248 53 424 237 92 15 chrX 127303347 127303478 -49670662 + MIR SINE MIR 86 226 -36 392 323 15 41 chrX 127303480 127303675 -49670465 - L2 LINE L2 -1 3312 3123 286 250 28 42 chrX 127303711 127303783 -49670357 - L2 LINE L2 -12 3260 3190 393 387 20 5 chrX 127304893 127305092 -49669048 - L2 LINE L2 -571 2743 2542 296 205 52 90 chrX 127305204 127305341 -49668799 - MIR SINE MIR -67 141 16 471 270 68 0 chrX 127305398 127305561 -49668579 - L1ME3A LINE L1 -32 6138 5965 861 289 53 30 chrX 127305628 127306122 -49668018 - L1ME3A LINE L1 -2049 5759 5255 207 292 0 0 chrX 127306894 127306942 -49667198 - L2 LINE L2 -5 3308 3261 197 311 58 19 chrX 127308376 127308479 -49665661 - MIR3 SINE MIR -100 108 2 204 298 0 0 chrX 127308484 127308541 -49665599 + A-rich Low_complexity Low_complexity 2 58 0 347 307 90 42 chrX 127308977 127309166 -49664974 + L2 LINE L2 3116 3313 0 189 74 0 0 chrX 127309254 127309281 -49664859 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 600 210 35 35 chrX 127309282 127309425 -49664715 - L2 LINE L2 -13 3300 3158 423 254 114 16 chrX 127309638 127309831 -49664309 + MIR SINE MIR 2 213 -49 1178 257 44 51 chrX 127309869 127310531 -49663609 + L1ME3A LINE L1 4809 5464 -706 945 211 0 20 chrX 127310531 127310735 -49663405 + MER105 DNA DNA 1 200 -4 1178 257 44 51 chrX 127310735 127311204 -49662936 + L1ME3A LINE L1 5464 5935 -235 201 39 0 0 chrX 127312047 127312073 -49662067 + (ATTG)n Simple_repeat Simple_repeat 1 26 0 2603 193 114 100 chrX 127312351 127312932 -49661208 + L1MD1 LINE L1 4 605 -5935 906 142 0 0 chrX 127312932 127313059 -49661081 - FLAM_C SINE Alu -4 129 3 2603 193 114 100 chrX 127313059 127313436 -49660704 + L1MD1 LINE L1 605 975 -5565 238 140 53 0 chrX 127313434 127313491 -49660649 + L1MD1 LINE L1 2036 2095 -4445 * 8359 216 43 38 chrX 127313492 127314059 -49660081 + L1MD1 LINE L1 2705 3267 -5122 1707 159 0 25 chrX 127314059 127314342 -49659798 - AluJo SINE Alu -23 289 14 8359 216 43 38 chrX 127314342 127314749 -49659391 + L1MD1 LINE L1 3267 3670 -4719 2175 169 48 17 chrX 127314749 127315164 -49658976 + MSTA LTR MaLR 1 428 0 8359 216 43 38 chrX 127315164 127315832 -49658308 + L1MD1 LINE L1 3670 4333 -4056 2263 92 0 0 chrX 127315832 127316114 -49658026 - AluSg SINE Alu 0 310 29 8359 216 43 38 chrX 127316114 127317043 -49657097 + L1MD1 LINE L1 4333 5255 -3134 1797 108 54 0 chrX 127317043 127317303 -49656837 - AluSx SINE Alu -3 309 36 8359 216 43 38 chrX 127317303 127318539 -49655601 + L1MD1 LINE L1 5255 8316 -73 343 157 14 71 chrX 127318543 127318613 -49655527 + AluJo SINE Alu 1 66 -236 1334 170 0 30 chrX 127318677 127318907 -49655233 + AluJo SINE Alu 71 293 -19 309 230 11 0 chrX 127318907 127318994 -49655146 + L1MD2 LINE L1 6272 6359 0 2381 92 27 16 chrX 127320688 127321058 -49653082 + L1MA2 LINE L1 5931 6304 0 245 250 202 10 chrX 127321101 127321205 -49652935 - MIR3 SINE MIR -4 204 81 792 196 12 29 chrX 127321281 127321454 -49652686 - MIR SINE MIR 0 262 93 2688 128 2 9 chrX 127321754 127322183 -49651957 - L1PA16 LINE L1 -20 6146 5721 1613 148 20 7 chrX 127322446 127322749 -49651391 - L1MA5 LINE L1 0 6300 5994 1549 165 58 1 chrX 127322749 127323076 -49651064 + L1MA5 LINE L1 5616 5964 -204 266 267 0 82 chrX 127323130 127323378 -49650762 + (CAGA)n Simple_repeat Simple_repeat 1 227 0 230 282 49 25 chrX 127323342 127323505 -49650635 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 * 393 318 0 20 chrX 127323422 127323573 -49650567 + GA-rich Low_complexity Low_complexity 2 149 0 183 174 22 33 chrX 127323674 127323766 -49650374 + (CAGAGA)n Simple_repeat Simple_repeat 4 94 0 206 295 11 0 chrX 127323773 127323868 -49650272 + GA-rich Low_complexity Low_complexity 2 97 0 362 335 6 6 chrX 127323890 127324069 -49650071 + GA-rich Low_complexity Low_complexity 1 179 0 301 306 17 6 chrX 127323988 127324161 -49649979 + (CAGAGA)n Simple_repeat Simple_repeat 5 179 0 * 253 292 6 29 chrX 127324093 127324264 -49649876 + GA-rich Low_complexity Low_complexity 1 167 0 * 356 289 4 24 chrX 127324296 127324513 -49649627 + GA-rich Low_complexity Low_complexity 1 212 0 4659 154 11 23 chrX 127324613 127325586 -49648554 + L1MB5 LINE L1 5176 6135 -39 287 279 16 0 chrX 127325594 127325716 -49648424 + (CAGA)n Simple_repeat Simple_repeat 3 126 0 258 263 13 53 chrX 127325729 127325881 -49648259 + (CAGAGA)n Simple_repeat Simple_repeat 5 150 0 214 265 35 41 chrX 127325836 127326006 -49648134 + (CAGA)n Simple_repeat Simple_repeat 4 172 0 * 200 296 0 12 chrX 127326102 127326183 -49647957 + GA-rich Low_complexity Low_complexity 1 80 0 * 452 275 15 25 chrX 127326142 127326485 -49647655 + (CAGA)n Simple_repeat Simple_repeat 1 339 0 238 263 12 0 chrX 127326553 127326633 -49647507 + (CAGA)n Simple_repeat Simple_repeat 2 82 0 * 366 279 11 17 chrX 127326574 127326817 -49647323 + (CAGAGA)n Simple_repeat Simple_repeat 1 241 0 21 36 0 0 chrX 127327400 127327428 -49646712 + AT_rich Low_complexity Low_complexity 1 28 0 421 270 156 55 chrX 127328218 127328455 -49645685 + MIR SINE MIR 2 262 0 393 227 8 83 chrX 127331390 127331522 -49642618 + MIR SINE MIR 78 199 -63 2389 108 3 18 chrX 127331539 127331880 -49642260 - MER1B DNA MER1_type 0 337 2 22 0 0 0 chrX 127332113 127332135 -49642005 + AT_rich Low_complexity Low_complexity 1 22 0 320 255 22 109 chrX 127332361 127332545 -49641595 - L3 LINE CR1 -2 1575 1408 219 357 20 0 chrX 127332557 127332655 -49641485 + MIR SINE MIR 162 261 -1 1166 254 171 43 chrX 127332670 127332868 -49641272 - L3 LINE CR1 -174 1403 1232 2201 121 0 26 chrX 127332868 127333174 -49640966 + AluSx SINE Alu 1 298 -14 1166 254 171 43 chrX 127333174 127333538 -49640602 - L3 LINE CR1 -345 1232 769 513 296 7 21 chrX 127333831 127333973 -49640167 + MIR SINE MIR 2 141 -121 987 337 94 30 chrX 127334037 127334580 -49639560 - L3 LINE CR1 -820 757 180 180 222 44 0 chrX 127335621 127335666 -49638474 - L2 LINE L2 -19 3253 3207 637 216 8 8 chrX 127335697 127335831 -49638309 - MIR SINE MIR -118 144 11 2045 128 7 7 chrX 127336230 127336527 -49637613 - AluSx SINE Alu -15 297 1 474 251 89 42 chrX 127336880 127337094 -49637046 + MIR SINE MIR 38 261 -1 2634 135 10 5 chrX 127337158 127337574 -49636566 - MER47B DNA MER2_type 0 418 1 799 269 0 20 chrX 127338037 127338234 -49635906 - MIR3 SINE MIR 0 208 16 231 36 0 0 chrX 127339167 127339195 -49634945 + (TG)n Simple_repeat Simple_repeat 1 28 0 878 229 37 14 chrX 127339955 127340173 -49633967 + MER58A DNA MER1_type 1 223 -1 2234 93 17 0 chrX 127340277 127340566 -49633574 - AluSx SINE Alu -18 294 1 727 254 78 26 chrX 127340614 127340999 -49633141 - L1ME4a LINE L1 -40 6081 5677 7812 176 59 12 chrX 127342664 127343915 -49630225 - L1MD1 LINE L1 0 6242 5051 264 59 0 0 chrX 127343915 127343949 -49630191 + (TG)n Simple_repeat Simple_repeat 1 34 0 7812 176 59 12 chrX 127343949 127345084 -49629056 - L1MD1 LINE L1 -1191 5051 3704 348 191 138 11 chrX 127345139 127345233 -49628907 - L1ME4a LINE L1 -1210 4936 4831 519 281 152 13 chrX 127345352 127345553 -49628587 - MIR SINE MIR 0 262 26 3017 98 125 63 chrX 127345553 127346127 -49628013 + MER4B LTR ERV1 1 610 0 519 281 152 13 chrX 127346127 127346149 -49627991 - MIR SINE MIR -236 26 8 5165 137 0 0 chrX 127347957 127348730 -49625410 - LTR41 LTR ERVL 0 773 1 684 254 93 19 chrX 127349099 127349304 -49624836 + MIR SINE MIR 14 233 -29 653 288 68 5 chrX 127349321 127349512 -49624628 + MIR SINE MIR 48 250 -12 431 274 50 40 chrX 127358127 127358314 -49615826 - MIR SINE MIR -70 192 4 209 240 13 0 chrX 127358538 127358613 -49615527 + GA-rich Low_complexity Low_complexity 1 76 0 515 101 13 0 chrX 127360477 127360556 -49613584 + MADE1 DNA Mariner 1 80 0 843 278 48 8 chrX 127360702 127360950 -49613190 - MIR SINE MIR 0 262 5 207 327 0 18 chrX 127361875 127361930 -49612210 + L2 LINE L2 3125 3178 -94 197 229 108 60 chrX 127362054 127362137 -49612003 - MIR SINE MIR -59 203 117 336 293 103 40 chrX 127362140 127362314 -49611826 - MER5A DNA MER1_type -2 187 3 192 286 204 10 chrX 127362314 127362403 -49611737 - MIR SINE MIR -152 110 3 882 280 8 35 chrX 127363494 127363692 -49610448 + MIR SINE MIR 5 196 -66 4042 163 29 6 chrX 127363692 127364409 -49609731 - MER50 LTR ERV1 0 734 1 882 280 8 35 chrX 127364409 127364467 -49609673 + MIR SINE MIR 196 254 -8 421 284 58 26 chrX 127364495 127364650 -49609490 - MIR SINE MIR -94 168 9 213 196 0 0 chrX 127365059 127365110 -49609030 + CT-rich Low_complexity Low_complexity 3 53 0 229 323 32 0 chrX 127365584 127365646 -49608494 - L2 LINE L2 -5 3308 3245 1451 254 35 17 chrX 127365824 127366400 -49607740 + L1MA8 LINE L1 2323 2908 -4657 587 200 6 19 chrX 127366398 127366558 -49607582 + L1MA8 LINE L1 3422 3579 -3986 * 3004 145 18 0 chrX 127366553 127366844 -49607296 + L1MA8 LINE L1 5893 6177 -1388 1557 141 0 0 chrX 127366844 127367078 -49607062 + MER46A DNA MER2_type 2 235 -1 3004 145 18 0 chrX 127367078 127367351 -49606789 + L1MA8 LINE L1 6177 6467 -1098 29766 107 16 58 chrX 127367372 127373787 -49600353 + L1PA7 LINE L1 13 6154 0 5970 122 30 7 chrX 127373785 127375009 -49599131 + L1MA8 LINE L1 6461 7710 0 * 4525 14 0 0 chrX 127375098 127375685 -49598455 + L1PA2 LINE L1 5637 6223 0 2012 140 0 7 chrX 127375696 127376004 -49598136 + AluJb SINE Alu 1 306 -6 1854 182 4 90 chrX 127376154 127376383 -49597757 + MER47B DNA MER2_type 1 173 -2150 2702 31 0 0 chrX 127376383 127376703 -49597437 + L1PA4 LINE L1 5836 6155 0 1854 182 4 90 chrX 127376703 127376930 -49597210 + MER47B DNA MER2_type 173 418 0 22 0 0 0 chrX 127377533 127377555 -49596585 + AT_rich Low_complexity Low_complexity 1 22 0 378 291 63 8 chrX 127377911 127378038 -49596102 - MIR3 SINE MIR -12 196 63 663 140 0 22 chrX 127378106 127378242 -49595898 - L1MB1 LINE L1 0 6168 6036 1220 274 97 14 chrX 127378462 127379202 -49594938 + L1ME3A LINE L1 5132 5940 -230 2099 204 21 63 chrX 127379441 127380015 -49594125 + MER44D DNA MER2_type 1 605 0 522 320 57 89 chrX 127381219 127381569 -49592571 + L2 LINE L2 2934 3272 0 218 240 48 77 chrX 127381859 127381963 -49592177 - MIR SINE MIR -71 191 91 673 303 50 25 chrX 127383160 127383401 -49590739 - MIR SINE MIR -15 247 1 983 304 0 4 chrX 127383524 127383771 -49590369 - MIR SINE MIR 0 262 17 743 308 0 5 chrX 127383835 127384020 -49590120 - MIR3 SINE MIR -9 199 16 818 294 143 48 chrX 127384066 127384549 -49589591 + L2 LINE L2 1124 1652 -1662 614 240 45 83 chrX 127384549 127384791 -49589349 + L2 LINE L2 2456 2688 -626 1551 187 97 92 chrX 127384795 127385229 -49588911 - MSTD LTR MaLR -5 391 17 791 266 126 40 chrX 127385234 127385794 -49588346 + L2 LINE L2 2682 3304 -9 447 19 0 0 chrX 127386331 127386383 -49587757 + (CA)n Simple_repeat Simple_repeat 2 53 0 399 21 0 0 chrX 127386924 127386972 -49587168 + (CA)n Simple_repeat Simple_repeat 1 48 0 412 133 0 0 chrX 127387278 127387338 -49586802 - L2 LINE L2 -5 3308 3249 558 173 14 86 chrX 127387811 127387950 -49586190 - L2 LINE L2 0 3313 3185 642 271 119 13 chrX 127389164 127389400 -49584740 - MIR SINE MIR 0 262 2 635 276 6 20 chrX 127389510 127389712 -49584428 + MIR3 SINE MIR 2 202 -6 537 333 34 25 chrX 127391334 127391571 -49582569 - L3 LINE CR1 -3 1574 1336 * 951 226 73 5 chrX 127391564 127391768 -49582372 + MIR SINE MIR 42 259 -3 217 234 0 0 chrX 127391773 127391820 -49582320 + (CTA)n Simple_repeat Simple_repeat 1 47 0 307 182 26 26 chrX 127391824 127391901 -49582239 - L3 LINE CR1 -260 1317 1241 2192 116 0 3 chrX 127392013 127392316 -49581824 + AluSq SINE Alu 3 304 -9 248 287 128 11 chrX 127392337 127392431 -49581709 + MIR SINE MIR 152 256 -6 393 246 147 71 chrX 127392441 127392652 -49581488 - L3 LINE CR1 -340 1237 1011 644 297 36 20 chrX 127393124 127393319 -49580821 + MIR3 SINE MIR 6 203 -5 23 54 0 0 chrX 127393750 127393787 -49580353 + AT_rich Low_complexity Low_complexity 1 37 0 387 0 0 0 chrX 127394435 127394478 -49579662 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1881 182 0 0 chrX 127394497 127394793 -49579347 + AluJb SINE Alu 1 296 -16 781 279 87 124 chrX 127396366 127397647 -49576493 + L2 LINE L2 1743 2975 -339 362 227 146 36 chrX 127397815 127397925 -49576215 + L2 LINE L2 3192 3313 0 224 200 18 0 chrX 127398302 127398357 -49575783 + GA-rich Low_complexity Low_complexity 1 56 0 2278 91 3 0 chrX 127399365 127399677 -49574463 - AluSp SINE Alu 0 313 1 2420 77 3 0 chrX 127400250 127400549 -49573591 - AluSp SINE Alu -13 300 1 622 48 0 0 chrX 127401941 127402025 -49572115 - AluSg/x SINE Alu -8 301 218 404 113 0 0 chrX 127402648 127402701 -49571439 + AluS SINE Alu 223 275 -37 274 60 20 20 chrX 127402705 127402755 -49571385 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 225 256 0 0 chrX 127403392 127403435 -49570705 - L2 LINE L2 -23 3290 3248 425 345 26 9 chrX 127403559 127403675 -49570465 + MIR3 SINE MIR 4 121 -87 210 259 37 19 chrX 127403930 127403984 -49570156 + MIR3 SINE MIR 151 205 -3 181 222 99 99 chrX 127404195 127404276 -49569864 + L2 LINE L2 3233 3313 0 956 114 0 0 chrX 127405226 127405349 -49568791 - AluJb SINE Alu -105 207 85 216 97 0 0 chrX 127405363 127405394 -49568746 + (T)n Simple_repeat Simple_repeat 1 31 0 708 200 129 110 chrX 127406189 127406499 -49567641 - L2 LINE L2 0 3313 2998 4759 209 215 22 chrX 127406835 127407108 -49567032 + L1MC/D LINE L1 34 253 -6287 2488 27 44 0 chrX 127407108 127407406 -49566734 + AluY SINE Alu 1 311 0 4759 209 215 22 chrX 127407406 127408614 -49565526 + L1MC/D LINE L1 253 1800 -4740 2688 188 58 74 chrX 127408607 127409513 -49564627 + L1MC/D LINE L1 4158 5049 -1491 * 1526 180 47 16 chrX 127409558 127410086 -49564054 + L1MC/D LINE L1 5451 5995 -641 2064 220 34 12 chrX 127410086 127410500 -49563640 + ERVL LTR ERVL 4474 4896 -868 690 257 125 0 chrX 127410632 127410920 -49563220 + L1ME2 LINE L1 3097 3420 -3120 * 1569 220 7 19 chrX 127410918 127411331 -49562809 + L1ME2 LINE L1 6089 6496 -62 1450 181 45 51 chrX 127411331 127411706 -49562434 + L1MA10 LINE L1 5933 6305 -29 2312 93 0 10 chrX 127412020 127412330 -49561810 - AluSx SINE Alu -5 307 1 204 40 0 0 chrX 127412831 127412856 -49561284 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 572 377 35 50 chrX 127412856 127412958 -49561182 - L2 LINE L2 -15 3257 3155 1977 104 14 35 chrX 127412958 127413287 -49560853 + AluSg SINE Alu 1 323 0 572 377 35 50 chrX 127413287 127413584 -49560556 - L2 LINE L2 -117 3155 2863 341 302 78 17 chrX 127413562 127413741 -49560399 - L2 LINE L2 -571 2743 2554 * 2316 220 67 35 chrX 127413767 127413874 -49560266 + L2 LINE L2 2009 2111 -1203 2246 92 7 3 chrX 127413874 127414169 -49559971 - AluSx SINE Alu -16 296 1 2316 220 67 35 chrX 127414169 127414715 -49559425 + L2 LINE L2 2111 2683 -631 4590 177 53 49 chrX 127414718 127415885 -49558255 + L1MA10 LINE L1 5161 6328 -6 1101 206 31 130 chrX 127415913 127416407 -49557733 + L2 LINE L2 2676 3070 -243 180 111 0 0 chrX 127416407 127416434 -49557706 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1101 206 31 130 chrX 127416434 127416656 -49557484 + L2 LINE L2 3070 3313 0 279 254 28 0 chrX 127417124 127417195 -49556945 - MIR3 SINE MIR -1 207 135 26 0 0 0 chrX 127418033 127418059 -49556081 + AT_rich Low_complexity Low_complexity 1 26 0 1264 228 126 31 chrX 127418094 127418476 -49555664 + MLT1F LTR MaLR 125 542 0 2012 144 7 0 chrX 127418644 127418942 -49555198 + AluSx SINE Alu 1 300 -12 21 36 0 0 chrX 127418952 127418980 -49555160 + AT_rich Low_complexity Low_complexity 1 28 0 325 279 0 72 chrX 127419494 127419605 -49554535 - L2 LINE L2 -19 3294 3192 423 374 154 20 chrX 127419622 127420514 -49553626 + L2 LINE L2 1959 2969 -345 5039 164 59 50 chrX 127420794 127422039 -49552101 - Charlie1a DNA MER1_type 0 1455 199 870 162 110 5 chrX 127422039 127422230 -49551910 + L1M4 LINE L1 5584 5794 -390 1110 195 40 22 chrX 127422232 127422458 -49551682 - Charlie1a DNA MER1_type -1225 230 1 568 341 104 16 chrX 127422529 127422846 -49551294 + L2 LINE L2 2142 2486 -828 272 218 127 0 chrX 127422952 127423007 -49551133 - Charlie8 DNA MER1_type -2354 63 2 394 324 46 99 chrX 127423014 127423387 -49550753 + L2 LINE L2 2530 2882 -432 605 175 61 0 chrX 127423426 127423540 -49550600 - MIR SINE MIR -31 231 111 358 282 65 0 chrX 127423588 127423712 -49550428 + L2 LINE L2 2927 3058 -214 507 138 0 0 chrX 127424788 127424875 -49549265 + (GA)n Simple_repeat Simple_repeat 1 87 0 216 200 33 33 chrX 127426458 127426498 -49547642 + GA-rich Low_complexity Low_complexity 1 43 -17 7125 52 3 0 chrX 127426498 127427969 -49546171 + L1PA7 LINE L1 4681 6154 0 216 200 33 33 chrX 127427969 127427988 -49546152 + GA-rich Low_complexity Low_complexity 42 60 0 215 360 18 0 chrX 127428624 127428788 -49545352 + (CA)n Simple_repeat Simple_repeat 2 168 0 3557 195 27 30 chrX 127429183 127430554 -49543586 + L1MB7 LINE L1 4613 6175 -9 203 214 0 24 chrX 127430570 127430612 -49543528 + L3 LINE CR1 1233 1273 -304 403 284 60 91 chrX 127430673 127430958 -49543182 + L3 LINE CR1 1291 1566 -11 234 62 0 0 chrX 127433349 127433381 -49540759 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 829 194 19 28 chrX 127434969 127435180 -49538960 - MER3 DNA MER1_type 0 209 1 492 272 104 12 chrX 127435318 127435491 -49538649 - MER5A DNA MER1_type 0 189 1 223 323 158 8 chrX 127435865 127435992 -49538148 - L2 LINE L2 -25 3247 3102 856 248 48 24 chrX 127436757 127437007 -49537133 + MIR SINE MIR 1 256 -6 2110 125 0 0 chrX 127437011 127437323 -49536817 - AluSq SINE Alu 0 312 1 312 133 0 0 chrX 127438636 127438696 -49535444 + (GA)n Simple_repeat Simple_repeat 1 60 0 344 267 125 34 chrX 127439194 127439370 -49534770 + MIR SINE MIR 20 211 -51 662 257 15 59 chrX 127442286 127442488 -49531652 + MIR SINE MIR 20 212 -50 254 292 0 14 chrX 127443466 127443538 -49530602 + GA-rich Low_complexity Low_complexity 3 73 0 423 289 108 30 chrX 127444673 127444839 -49529301 + MIR3 SINE MIR 18 196 -12 742 171 0 0 chrX 127444971 127445108 -49529032 + FLAM_C SINE Alu 1 137 0 884 123 0 0 chrX 127445403 127445525 -49528615 - FRAM SINE Alu -2 174 53 410 276 105 0 chrX 127445538 127445643 -49528497 - MIR SINE MIR -113 149 34 511 302 135 18 chrX 127445797 127446019 -49528121 + MIR SINE MIR 1 248 -14 386 244 92 6 chrX 127446762 127446926 -49527214 + L1MC4 LINE L1 7864 8041 -1 498 247 59 5 chrX 127446942 127447128 -49527012 + L1MC4 LINE L1 7847 8042 0 321 188 0 62 chrX 127447260 127447340 -49526800 - L2 LINE L2 -13 3300 3226 259 396 43 6 chrX 127447400 127447564 -49526576 - L2 LINE L2 -433 2881 2712 578 27 0 13 chrX 127448121 127448196 -49525944 - L1P3 LINE L1 -490 5664 5591 620 23 12 23 chrX 127448196 127448281 -49525859 + L1PA8 LINE L1 6088 6172 0 275 261 15 69 chrX 127448294 127448424 -49525716 + L1MC4 LINE L1 7768 7890 -152 260 123 18 0 chrX 127448432 127448489 -49525651 + L1MC4 LINE L1 7985 8042 0 558 311 71 74 chrX 127448560 127449127 -49525013 + L2 LINE L2 2716 3272 0 217 233 67 17 chrX 127450483 127450543 -49523597 + L2 LINE L2 3250 3312 -1 221 273 0 0 chrX 127451423 127451489 -49522651 + MIR SINE MIR 124 189 -73 182 289 0 0 chrX 127451545 127451590 -49522550 - MIR SINE MIR -8 254 210 406 303 126 34 chrX 127451631 127451869 -49522271 - L2 LINE L2 -480 2834 2575 2349 84 0 3 chrX 127451925 127452221 -49521919 - AluSx SINE Alu -17 295 1 965 243 50 75 chrX 127452235 127452389 -49521751 - L1ME4a LINE L1 -16 6105 5949 324 70 0 0 chrX 127452389 127452432 -49521708 + (TG)n Simple_repeat Simple_repeat 2 44 0 965 243 50 75 chrX 127452432 127452874 -49521266 - L1ME4a LINE L1 -172 5949 5524 616 236 23 155 chrX 127453248 127453557 -49520583 - L2 LINE L2 -5 3267 3000 352 228 50 0 chrX 127454067 127454168 -49519972 + MER113 DNA MER1_type? 1 106 -415 262 252 49 94 chrX 127454403 127454689 -49519451 + L2 LINE L2 2819 3091 -181 515 341 97 26 chrX 127455180 127455406 -49518734 + MIR SINE MIR 21 262 0 316 270 87 9 chrX 127458261 127458376 -49515764 - L2 LINE L2 -8 3305 3182 1862 169 0 25 chrX 127458904 127459224 -49514916 + AluJb SINE Alu 1 312 0 262 298 24 12 chrX 127459395 127459479 -49514661 - L2 LINE L2 -2 3270 3186 754 326 8 70 chrX 127459526 127459869 -49514271 - L2 LINE L2 -810 2504 2200 2151 108 0 10 chrX 127459869 127460165 -49513975 - AluSx SINE Alu -19 293 1 754 326 8 70 chrX 127460165 127460324 -49513816 - L2 LINE L2 -1114 2200 2033 654 251 33 11 chrX 127460385 127460568 -49513572 - L2 LINE L2 -1 3312 3126 24 0 0 0 chrX 127460665 127460689 -49513451 + AT_rich Low_complexity Low_complexity 1 24 0 193 183 33 0 chrX 127460724 127460784 -49513356 + (TA)n Simple_repeat Simple_repeat 1 62 0 2220 101 3 22 chrX 127464544 127464860 -49509280 - AluSq SINE Alu -3 310 1 403 262 82 52 chrX 127465049 127465224 -49508916 - MIR SINE MIR -62 146 3 2133 124 3 13 chrX 127465352 127465666 -49508474 - AluSx SINE Alu -1 311 1 322 231 0 0 chrX 127465666 127465731 -49508409 + MIR SINE MIR 151 215 -47 380 292 54 15 chrX 127465734 127465864 -49508276 - MIR SINE MIR -95 167 33 707 220 48 5 chrX 127466427 127466613 -49507527 + L1M4c LINE L1 1222 1415 -4969 838 226 117 7 chrX 127467051 127467325 -49506815 + MER46C DNA MER2_type 31 334 -4 419 100 14 0 chrX 127467660 127467730 -49506410 + (CTA)n Simple_repeat Simple_repeat 1 71 0 546 279 6 42 chrX 127467773 127467938 -49506202 - MIR SINE MIR -47 215 57 495 274 80 29 chrX 127468335 127468510 -49505630 - MER5A DNA MER1_type 0 189 6 482 270 116 34 chrX 127468511 127468744 -49505396 + MIR SINE MIR 6 257 -5 196 339 18 0 chrX 127469190 127469246 -49504894 - L2 LINE L2 -89 3183 3127 200 279 59 0 chrX 127469247 127469315 -49504825 + MIR3 SINE MIR 85 156 -52 498 248 8 8 chrX 127469859 127469984 -49504156 - MIR SINE MIR -21 241 117 1954 97 47 14 chrX 127470022 127470319 -49503821 - AluSx SINE Alu 0 312 1 246 254 123 26 chrX 127471202 127471316 -49502824 - MIR SINE MIR -25 237 113 562 275 28 28 chrX 127471858 127472040 -49502100 - MIR SINE MIR -17 245 64 854 203 29 48 chrX 127472112 127472422 -49501718 - L1MC5 LINE L1 -48 7913 7610 2163 110 59 34 chrX 127472448 127472803 -49501337 - THE1B LTR MaLR 0 364 1 11979 82 14 0 chrX 127472803 127474362 -49499778 - THE1B-int LTR MaLR 0 1580 1 2266 109 48 28 chrX 127474362 127474719 -49499421 - THE1B LTR MaLR 0 364 1 487 231 49 74 chrX 127474825 127475028 -49499112 - L1ME LINE L1 -579 5583 5386 2932 236 81 76 chrX 127475074 127476376 -49497764 - L1ME LINE L1 -849 5297 3985 2417 119 11 16 chrX 127476376 127476753 -49497387 + THE1C LTR MaLR 1 375 0 2932 236 81 76 chrX 127476753 127476977 -49497163 - L1ME LINE L1 -2161 3985 3764 339 25 0 0 chrX 127477038 127477078 -49497062 + (TC)n Simple_repeat Simple_repeat 2 41 0 1851 135 4 11 chrX 127477078 127477352 -49496788 - AluJb SINE Alu -27 285 14 1196 287 46 18 chrX 127477488 127478163 -49495977 - L1ME LINE L1 -2981 3165 2467 1392 0 0 0 chrX 127478163 127478317 -49495823 + L1PA2 LINE L1 5997 6150 -5 1196 287 46 18 chrX 127478317 127478362 -49495778 - L1ME LINE L1 -3679 2467 2425 409 254 133 25 chrX 127478449 127478689 -49495451 - L1ME LINE L1 -3733 2413 2148 2465 227 51 24 chrX 127478703 127479512 -49494628 - L1ME3 LINE L1 -14 6148 5318 2112 187 34 24 chrX 127479525 127480028 -49494112 - L1ME1 LINE L1 -5 6161 5654 228 189 19 0 chrX 127480028 127480081 -49494059 + (TA)n Simple_repeat Simple_repeat 2 55 0 536 201 9 3 chrX 127480106 127480256 -49493884 + L1M4 LINE L1 5644 5791 -383 297 197 0 0 chrX 127480260 127480321 -49493819 + (TA)n Simple_repeat Simple_repeat 1 61 0 619 238 271 2 chrX 127480321 127480499 -49493641 - L1ME1 LINE L1 -497 5669 5540 2289 97 3 7 chrX 127480499 127480807 -49493333 - AluSx SINE Alu -5 307 1 619 238 271 2 chrX 127480807 127481016 -49493124 - L1ME1 LINE L1 -626 5540 5188 * 186 43 0 0 chrX 127481017 127481040 -49493100 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 5564 109 6 36 chrX 127481040 127482016 -49492124 - L1MA5A LINE L1 -7 6290 5346 212 322 17 0 chrX 127482140 127482199 -49491941 - MIR3 SINE MIR -52 156 97 241 307 44 53 chrX 127482232 127482346 -49491794 - MIR SINE MIR -148 114 2 343 322 33 0 chrX 127482385 127482475 -49491665 + MER82 DNA MER2_type 451 543 -110 5077 240 34 26 chrX 127482476 127483406 -49490734 + L1MD1 LINE L1 2346 3298 -2848 2174 128 0 3 chrX 127483406 127483711 -49490429 + AluJb SINE Alu 1 304 -8 5077 240 34 26 chrX 127483711 127484457 -49489683 + L1MD1 LINE L1 3298 4036 -2110 3723 202 54 9 chrX 127484455 127485273 -49488867 + L1MD1 LINE L1 5381 6235 -7 * 233 111 44 0 chrX 127485449 127485494 -49488646 + (CACCAT)n Simple_repeat Simple_repeat 1 47 0 396 318 14 22 chrX 127485908 127486131 -49488009 - HAL1b LINE L1 -848 500 280 1068 241 38 88 chrX 127486467 127486865 -49487275 + MLT2C1 LTR ERVL 20 397 0 1427 160 72 102 chrX 127486969 127487412 -49486728 + L1MC3 LINE L1 6797 7226 -559 557 205 179 71 chrX 127487442 127487666 -49486474 - MLT1E2 LTR MaLR -368 258 11 922 134 333 70 chrX 127487677 127487715 -49486425 + MER45R DNA AcHobo 917 944 -637 1895 140 7 29 chrX 127487715 127488022 -49486118 + AluSx SINE Alu 1 300 -12 922 134 333 70 chrX 127488022 127488208 -49485932 + MER45R DNA AcHobo 944 1080 -501 2393 78 10 3 chrX 127488208 127488516 -49485624 + AluY SINE Alu 2 311 0 922 134 333 70 chrX 127488516 127488693 -49485447 + MER45R DNA AcHobo 1080 1425 -156 336 189 79 94 chrX 127488700 127488733 -49485407 + MLT1E1 LTR MaLR 159 191 -463 339 244 12 12 chrX 127488733 127488819 -49485321 + MLT2C1 LTR ERVL 124 209 -188 735 160 39 6 chrX 127488829 127488985 -49485155 + MER45R DNA AcHobo 1414 1574 -7 3477 215 112 72 chrX 127488993 127489086 -49485054 + L1ME2 LINE L1 3665 3753 -2411 2148 110 0 20 chrX 127489086 127489386 -49484754 + AluSg SINE Alu 1 294 -16 636 106 0 0 chrX 127489387 127489481 -49484659 + (TA)n Simple_repeat Simple_repeat 1 94 0 3477 215 112 72 chrX 127489481 127490704 -49483436 + L1ME2 LINE L1 3753 5085 -1079 2185 127 14 0 chrX 127490704 127491058 -49483082 + L1MA5 LINE L1 5940 6298 -2 3477 215 112 72 chrX 127491058 127491607 -49482533 + L1ME2 LINE L1 5085 5610 -554 2674 192 13 46 chrX 127491615 127492137 -49482003 - MLT2B2 LTR ERVL -10 505 1 783 235 16 23 chrX 127492142 127492527 -49481613 + L1ME2 LINE L1 5611 6154 -10 27 87 0 0 chrX 127492573 127492642 -49481498 + AT_rich Low_complexity Low_complexity 1 69 0 925 79 0 40 chrX 127492642 127492768 -49481372 + AluSg/x SINE Alu 172 292 -18 820 256 85 45 chrX 127492803 127493335 -49480805 + L1M4 LINE L1 3225 3777 -2369 384 247 0 0 chrX 127493376 127493461 -49480679 - MER82 DNA MER2_type -568 85 1 2120 161 9 3 chrX 127493471 127493807 -49480333 + MER2 DNA MER2_type 1 338 -7 4517 189 60 15 chrX 127493818 127494931 -49479209 - L1MDa LINE L1 -4223 2317 1155 1832 48 0 0 chrX 127494931 127495159 -49478981 + L1PA7 LINE L1 5926 6153 -1 5574 156 23 22 chrX 127495159 127496135 -49478005 - L1MA9 LINE L1 -39 6273 5294 228 35 0 0 chrX 127496135 127496164 -49477976 + (TA)n Simple_repeat Simple_repeat 1 29 0 5574 156 23 22 chrX 127496164 127496197 -49477943 - L1MA9 LINE L1 -1018 5294 5263 305 197 15 0 chrX 127496194 127496260 -49477880 - L1MC5 LINE L1 -929 7032 6966 * 846 227 41 0 chrX 127496274 127496446 -49477694 - AluJo/FRAM SINE Alu 0 312 134 1072 139 6 12 chrX 127496446 127496611 -49477529 - FRAM SINE Alu -10 166 3 464 175 15 111 chrX 127496635 127496830 -49477310 - L1MC5 LINE L1 -834 6951 6807 1184 281 114 48 chrX 127496885 127497227 -49476913 - L1MC4a LINE L1 -1017 6791 6473 1819 167 16 27 chrX 127497227 127497593 -49476547 + MLT1A1 LTR MaLR 4 365 0 1184 281 114 48 chrX 127497593 127498180 -49475960 - L1MC4a LINE L1 -1335 6473 5801 29 0 0 0 chrX 127498612 127498641 -49475499 + AT_rich Low_complexity Low_complexity 1 29 0 207 306 28 14 chrX 127498742 127498875 -49475265 - MIR SINE MIR -64 198 63 919 201 112 59 chrX 127499097 127499557 -49474583 - MLT1F1 LTR MaLR -5 562 1 985 205 60 47 chrX 127499578 127499812 -49474328 - MIR SINE MIR -25 237 1 720 306 21 59 chrX 127499815 127500152 -49473988 - L2 LINE L2 -163 3150 2827 400 304 112 13 chrX 127500175 127500399 -49473741 + L1M4b LINE L1 29 274 -6585 724 196 74 84 chrX 127500727 127501012 -49473128 + L1M4b LINE L1 930 1211 -5648 3006 199 60 7 chrX 127501230 127501298 -49472842 + L1M4b LINE L1 1193 1256 -5599 180 111 0 0 chrX 127501298 127501325 -49472815 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3006 199 60 7 chrX 127501325 127501984 -49472156 + L1M4b LINE L1 1256 1959 -4896 669 317 6 0 chrX 127502114 127502275 -49471865 + MER91A DNA MER1_type 2 163 -33 351 278 103 0 chrX 127502287 127502384 -49471756 + MER91A DNA MER1_type 90 196 0 557 287 47 0 chrX 127502646 127502796 -49471344 + MIR SINE MIR 79 235 -27 6570 5 0 0 chrX 127502801 127503535 -49470605 - L1HS LINE L1 0 6155 5422 282 331 59 29 chrX 127503839 127503975 -49470165 - MER5A DNA MER1_type -10 179 40 203 229 0 0 chrX 127504445 127504480 -49469660 + polypyrimidine Low_complexity Low_complexity 3 37 0 202 273 102 23 chrX 127505158 127505286 -49468854 + L2 LINE L2 2131 2268 -1046 909 217 51 43 chrX 127505302 127505555 -49468585 + L2 LINE L2 2446 2700 -614 2303 173 78 19 chrX 127505560 127506086 -49468054 - L1MD2 LINE L1 -8 6351 5795 967 180 88 71 chrX 127506098 127506392 -49467748 - MLT1C LTR MaLR 0 467 169 1480 213 55 19 chrX 127506398 127506760 -49467380 - LTR55 LTR ERV -173 375 1 6167 239 49 59 chrX 127506761 127509994 -49464146 - L1MD2 LINE L1 -734 5625 2450 920 284 35 35 chrX 127509994 127510063 -49464077 + L2 LINE L2 2689 2757 -557 2201 70 0 0 chrX 127510063 127510335 -49463805 + AluY SINE Alu 36 307 -4 920 284 35 35 chrX 127510335 127510554 -49463586 + L2 LINE L2 2756 2977 -337 180 297 81 14 chrX 127510598 127510672 -49463468 - MIR SINE MIR -123 139 61 1032 211 39 5 chrX 127511158 127511366 -49462774 + MER58A DNA MER1_type 10 224 0 898 296 83 50 chrX 127511394 127511873 -49462267 - MLT1G1 LTR MaLR -8 587 93 236 91 23 0 chrX 127512660 127512704 -49461436 + (TC)n Simple_repeat Simple_repeat 2 46 0 348 24 0 0 chrX 127512704 127512745 -49461395 + (CA)n Simple_repeat Simple_repeat 1 41 0 43055 30 22 1 chrX 127512844 127518870 -49455270 + L1PA2 LINE L1 1 6154 -1 289 295 0 13 chrX 127518967 127519045 -49455095 + GA-rich Low_complexity Low_complexity 2 78 0 2177 173 20 41 chrX 127519185 127519676 -49454464 - MER31A LTR ERV1 -4 481 1 241 341 9 121 chrX 127519678 127519901 -49454239 + L2 LINE L2 3025 3222 -50 940 279 21 4 chrX 127521646 127521883 -49452257 - MIR SINE MIR -20 242 2 209 264 57 0 chrX 127521909 127521962 -49452178 - MIR SINE MIR -80 128 73 181 333 20 0 chrX 127522101 127522152 -49451988 - L2 LINE L2 -11 3261 3210 202 154 0 0 chrX 127522170 127522209 -49451931 - L2 LINE L2 0 3313 3275 2783 146 22 12 chrX 127522213 127522721 -49451419 + L1MB7 LINE L1 5663 6175 -9 211 347 27 0 chrX 127522731 127522806 -49451334 + L2 LINE L2 3016 3092 -180 640 314 124 41 chrX 127523007 127523395 -49450745 - L2 LINE L2 -9 3263 2844 7327 145 18 10 chrX 127523632 127524901 -49449239 - Ricksha_c DNA DNA -13 2033 812 1726 140 104 0 chrX 127524890 127525169 -49448971 - Ricksha_c DNA DNA -1719 327 20 * 510 290 46 74 chrX 127525170 127525536 -49448604 - L2 LINE L2 -767 2547 2192 199 235 259 35 chrX 127525520 127525605 -49448535 + L2 LINE L2 3168 3271 -1 * 717 262 167 0 chrX 127525686 127525907 -49448233 - MIR SINE MIR -2 260 3 521 236 0 40 chrX 127526071 127526121 -49448019 + L1ME4a LINE L1 4912 4962 -1184 1728 201 94 3 chrX 127526121 127526484 -49447656 + MSTD LTR MaLR 1 396 0 521 236 0 40 chrX 127526484 127526581 -49447559 + L1ME4a LINE L1 4962 5053 -1093 378 209 44 0 chrX 127526590 127526681 -49447459 - L1M4 LINE L1 -1195 5449 5355 * 2653 224 10 20 chrX 127526680 127527270 -49446870 - L1M4 LINE L1 -5945 597 14 7436 201 27 19 chrX 127527273 127528772 -49445368 - L1M4b LINE L1 -5303 1556 47 3559 162 30 12 chrX 127529052 127529718 -49444422 + L1MC3 LINE L1 7108 7785 0 328 287 115 8 chrX 127529885 127530007 -49444133 + L1ME4a LINE L1 5617 5751 -370 323 145 96 24 chrX 127530079 127530162 -49443978 - MER103 DNA DNA -23 143 55 312 300 67 13 chrX 127530287 127530437 -49443703 + L1ME4a LINE L1 5765 5922 -199 336 245 122 0 chrX 127530450 127530597 -49443543 + L1ME4a LINE L1 5957 6121 0 195 100 0 0 chrX 127531329 127531359 -49442781 + (ATATG)n Simple_repeat Simple_repeat 1 30 0 430 310 14 14 chrX 127531360 127531505 -49442635 + MIR3 SINE MIR 13 157 -51 826 272 177 40 chrX 127531511 127531767 -49442373 + L2 LINE L2 2748 2968 -345 2865 156 32 0 chrX 127531767 127532210 -49441930 + MSTB2 LTR MaLR 1 457 0 826 272 177 40 chrX 127532210 127532463 -49441677 + L2 LINE L2 2968 3311 -2 676 213 25 31 chrX 127532495 127532655 -49441485 - MIR SINE MIR -28 234 76 459 285 126 6 chrX 127532631 127532823 -49441317 - MIR SINE MIR -31 231 20 * 3455 111 17 2 chrX 127532871 127533349 -49440791 - L1PB3 LINE L1 -2 6152 5668 248 224 75 15 chrX 127533986 127534053 -49440087 + MER91C DNA MER1_type 33 103 -37 6689 74 28 10 chrX 127534167 127534203 -49439937 + L1MA1 LINE L1 5367 5401 -901 1852 105 0 0 chrX 127534203 127534450 -49439690 + AluSq SINE Alu 1 247 -66 6689 74 28 10 chrX 127534450 127535332 -49438808 + L1MA1 LINE L1 5401 6302 0 445 309 46 0 chrX 127535918 127536070 -49438070 - MIR SINE MIR -51 211 53 306 259 117 22 chrX 127536503 127536665 -49437475 + MIR SINE MIR 31 247 -15 1108 187 24 5 chrX 127537167 127537376 -49436764 + L1MA9 LINE L1 6016 6228 -84 1847 165 6 74 chrX 127537377 127537740 -49436400 - MER2 DNA MER2_type 0 345 8 378 146 61 12 chrX 127537740 127537822 -49436318 + L1MA9 LINE L1 6222 6307 -5 430 290 48 28 chrX 127537826 127537971 -49436169 + MIR SINE MIR 20 167 -95 400 228 13 13 chrX 127537969 127538048 -49436092 - L2 LINE L2 0 3272 3194 * 219 347 88 27 chrX 127538156 127538303 -49435837 - L2 LINE L2 -787 2527 2372 426 294 64 5 chrX 127538348 127538554 -49435586 - MIR SINE MIR -21 241 20 3592 161 31 45 chrX 127539530 127540004 -49434136 - L1MA9 LINE L1 -39 6273 5794 519 17 0 0 chrX 127540004 127540064 -49434076 + (CA)n Simple_repeat Simple_repeat 2 61 0 3592 161 31 45 chrX 127540064 127540101 -49434039 - L1MA9 LINE L1 -518 5794 5758 2057 69 4 29 chrX 127540101 127540375 -49433765 - L1PA13 LINE L1 -8 6155 5889 3592 161 31 45 chrX 127540375 127540600 -49433540 - L1MA9 LINE L1 -554 5758 5546 1196 289 53 40 chrX 127540732 127541200 -49432940 - MLT1J LTR MaLR -8 503 1 378 0 0 0 chrX 127541696 127541738 -49432402 + (TA)n Simple_repeat Simple_repeat 2 43 0 1894 109 19 0 chrX 127542562 127542829 -49431311 + L1PA16 LINE L1 5895 6166 0 381 207 0 0 chrX 127542939 127543021 -49431119 + (TA)n Simple_repeat Simple_repeat 2 83 0 282 264 35 0 chrX 127543021 127543108 -49431032 - L1MC4 LINE L1 -1339 6703 6614 239 198 21 94 chrX 127543023 127543119 -49431021 + L1MC4 LINE L1 6614 6702 -1340 * 413 159 0 11 chrX 127543121 127543209 -49430931 + (TA)n Simple_repeat Simple_repeat 1 87 0 265 346 0 16 chrX 127543211 127543338 -49430802 + GA-rich Low_complexity Low_complexity 2 126 0 477 117 0 68 chrX 127543990 127544093 -49430047 - L1MA7 LINE L1 -5 6286 6191 2853 125 42 21 chrX 127544100 127544151 -49429989 + L1MA7 LINE L1 5728 5776 -515 261 0 0 0 chrX 127544151 127544180 -49429960 + (CA)n Simple_repeat Simple_repeat 1 29 0 2853 125 42 21 chrX 127544180 127544607 -49429533 + L1MA7 LINE L1 5776 6216 -75 578 267 93 6 chrX 127544744 127544916 -49429224 - MIR SINE MIR -72 190 4 860 208 34 68 chrX 127545603 127545839 -49428301 - MIR SINE MIR -24 238 11 953 243 20 8 chrX 127546314 127546561 -49427579 - MIR SINE MIR 0 262 13 180 342 44 18 chrX 127546613 127546727 -49427413 - MIR3 SINE MIR -41 167 51 272 202 183 39 chrX 127546754 127546858 -49427282 + L2 LINE L2 3154 3272 0 749 35 0 0 chrX 127547188 127547274 -49426866 + L1PA6 LINE L1 6061 6146 -8 27 0 0 0 chrX 127547274 127547301 -49426839 + AT_rich Low_complexity Low_complexity 1 27 0 842 233 81 47 chrX 127547313 127547549 -49426591 - MIR SINE MIR -16 246 3 416 272 8 16 chrX 127547650 127547775 -49426365 - L2 LINE L2 -939 2375 2252 1015 231 13 22 chrX 127547793 127548022 -49426118 - MIR SINE MIR 0 262 36 279 248 221 0 chrX 127548023 127548136 -49426004 + MIR SINE MIR 112 249 -13 402 292 18 0 chrX 127548315 127548428 -49425712 + MIR SINE MIR 145 259 -3 655 295 107 0 chrX 127548946 127549180 -49424960 + MIR SINE MIR 1 259 -3 216 97 0 0 chrX 127549583 127549614 -49424526 + (CA)n Simple_repeat Simple_repeat 1 31 0 293 258 30 0 chrX 127550206 127550272 -49423868 - L2 LINE L2 -4 3309 3242 569 217 0 56 chrX 127550338 127550481 -49423659 - MIR SINE MIR -22 240 106 1688 200 73 36 chrX 127550488 127550927 -49423213 + MLT1C LTR MaLR 1 467 0 223 316 0 0 chrX 127550935 127550992 -49423148 - MIR SINE MIR -193 69 13 485 258 0 39 chrX 127551073 127551201 -49422939 + MIR3 SINE MIR 86 208 0 436 270 70 0 chrX 127552352 127552467 -49421673 + MIR SINE MIR 118 240 -22 842 304 156 23 chrX 127552473 127553158 -49420982 + L2 LINE L2 2293 3082 -190 634 240 33 33 chrX 127553654 127553837 -49420303 - MIR SINE MIR -6 256 74 592 309 59 9 chrX 127553850 127554070 -49420070 - MIR SINE MIR -12 250 20 365 238 12 0 chrX 127555298 127555378 -49418762 - L1ME3 LINE L1 -111 6051 5971 669 200 32 0 chrX 127555378 127555503 -49418637 - MER5A DNA MER1_type -27 162 34 1328 194 59 128 chrX 127555562 127555809 -49418331 - L1ME3 LINE L1 -265 5905 5643 1541 133 0 17 chrX 127555809 127556043 -49418097 - L1PA10 LINE L1 0 6168 5939 1328 194 59 128 chrX 127556043 127556298 -49417842 - L1ME3 LINE L1 -527 5643 5438 207 0 0 0 chrX 127556298 127556321 -49417819 + (TG)n Simple_repeat Simple_repeat 2 24 0 1328 194 59 128 chrX 127556321 127556342 -49417798 - L1ME3 LINE L1 -732 5438 5417 466 391 20 0 chrX 127556640 127556888 -49417252 - L2 LINE L2 -385 2929 2677 414 131 0 0 chrX 127556892 127556953 -49417187 - MER5B DNA MER1_type 0 178 118 19852 19 0 0 chrX 127556953 127559228 -49414912 - L1HS LINE L1 -1188 4958 2684 8202 14 0 0 chrX 127559219 127560433 -49413707 + L1HS LINE L1 4942 6155 0 * 24 32 0 0 chrX 127560433 127560464 -49413676 + AT_rich Low_complexity Low_complexity 1 31 0 361 254 0 0 chrX 127560470 127560541 -49413599 - MER5B DNA MER1_type -48 130 60 502 289 46 25 chrX 127560545 127560784 -49413356 - L2 LINE L2 -744 2570 2327 451 312 70 6 chrX 127561213 127561370 -49412770 - MIR SINE MIR -37 225 59 278 293 47 11 chrX 127561629 127561752 -49412388 - MIR SINE MIR -23 185 52 254 286 22 22 chrX 127562258 127562349 -49411791 - MIR SINE MIR -11 251 161 237 167 0 0 chrX 127562353 127562389 -49411751 - L2 LINE L2 -17 3255 3220 393 158 0 32 chrX 127562389 127562484 -49411656 + (TA)n Simple_repeat Simple_repeat 2 93 0 478 101 0 22 chrX 127562713 127562802 -49411338 + (TA)n Simple_repeat Simple_repeat 2 88 0 234 0 0 0 chrX 127562802 127562828 -49411312 + (GA)n Simple_repeat Simple_repeat 2 27 0 283 235 24 35 chrX 127562835 127562879 -49411261 - MIR SINE MIR -75 187 143 2141 155 119 13 chrX 127562879 127563266 -49410874 + MSTA LTR MaLR 1 428 0 283 235 24 35 chrX 127563266 127563306 -49410834 - MIR SINE MIR -119 143 104 578 237 46 15 chrX 127563313 127563444 -49410696 - L2 LINE L2 -4 3268 3134 185 289 0 0 chrX 127563864 127563909 -49410231 - L2 LINE L2 -19 3253 3209 390 254 8 15 chrX 127564152 127564286 -49409854 + GA-rich Low_complexity Low_complexity 1 133 0 240 250 53 129 chrX 127564730 127564862 -49409278 + MIR3 SINE MIR 35 156 -52 375 312 7 57 chrX 127565612 127565753 -49408387 + L2 LINE L2 3139 3272 0 215 283 113 0 chrX 127565875 127565928 -49408212 + L2 LINE L2 3153 3211 -61 1540 258 93 16 chrX 127566020 127566789 -49407351 - L2 LINE L2 -7 3306 2480 237 143 24 0 chrX 127566790 127566832 -49407308 + L2 LINE L2 3017 3059 -213 1179 234 33 0 chrX 127567534 127567808 -49406332 - L1ME3 LINE L1 -2 6160 5878 430 244 23 30 chrX 127567808 127567939 -49406201 + MIR SINE MIR 92 221 -41 673 310 34 29 chrX 127568189 127568428 -49405712 + MIR SINE MIR 5 244 -18 2330 159 11 8 chrX 127568839 127569216 -49404924 - L1MC1 LINE L1 -16 6317 5940 676 305 115 28 chrX 127569851 127570241 -49403899 + L1ME LINE L1 5383 5806 -364 1632 173 75 26 chrX 127570275 127570453 -49403687 - MLT1A2 LTR MaLR -11 363 195 252 0 0 0 chrX 127570453 127570481 -49403659 + (GA)n Simple_repeat Simple_repeat 2 29 0 1632 173 75 26 chrX 127570481 127570648 -49403492 - MLT1A2 LTR MaLR -179 195 1 1473 157 0 0 chrX 127570648 127570877 -49403263 - MLT1A2-int LTR MaLR 0 1735 1507 210 321 124 0 chrX 127570918 127571055 -49403085 + L3 LINE CR1 1160 1313 -264 272 326 0 0 chrX 127571150 127571245 -49402895 - MIR SINE MIR -11 251 157 714 168 63 7 chrX 127572609 127572752 -49401388 - L1MA10 LINE L1 -2 6332 6182 10371 217 64 13 chrX 127572780 127576083 -49398057 - L1ME2 LINE L1 -163 6395 2894 2745 157 26 0 chrX 127576083 127576504 -49397636 + MSTB1 LTR MaLR 1 432 0 10371 217 64 13 chrX 127576504 127576719 -49397421 - L1ME2 LINE L1 -3664 2894 2691 768 266 68 51 chrX 127576716 127577283 -49396857 - L1ME2 LINE L1 -4661 1879 1348 * 339 284 148 6 chrX 127577285 127577447 -49396693 + L2 LINE L2 2130 2314 -1000 317 143 36 0 chrX 127777568 127777624 -49196516 + Tigger7 DNA MER2_type 2429 2486 -1 296 228 13 0 chrX 127777688 127777767 -49196373 + L1MDb LINE L1 1035 1114 -5429 2468 93 0 0 chrX 127777770 127778082 -49196058 + AluSx SINE Alu 1 312 0 729 245 82 59 chrX 127778096 127778623 -49195517 + L1MDb LINE L1 1750 2300 -4240 1892 121 38 17 chrX 127778623 127778912 -49195228 + AluSx SINE Alu 3 297 -15 729 245 82 59 chrX 127778912 127779128 -49195012 + L1MDb LINE L1 2300 2510 -4030 688 162 0 0 chrX 127779228 127779333 -49194807 - FLAM_C SINE Alu -38 105 1 21 36 0 0 chrX 127780743 127780771 -49193369 + AT_rich Low_complexity Low_complexity 1 28 0 680 283 31 14 chrX 127781723 127781946 -49192194 - MIR SINE MIR -16 246 20 1748 194 0 0 chrX 127781965 127782276 -49191864 - AluJo SINE Alu 0 311 1 358 253 172 20 chrX 127782412 127782708 -49191432 - L1ME4a LINE L1 -21 6100 5760 2116 108 27 7 chrX 127782708 127783004 -49191136 - AluSx SINE Alu -10 302 1 2321 101 0 3 chrX 127783398 127783705 -49190435 + AluSq SINE Alu 1 306 -7 439 161 20 0 chrX 127783734 127783832 -49190308 + L1ME4a LINE L1 5759 5860 -261 333 0 0 0 chrX 127783891 127783928 -49190212 + (TA)n Simple_repeat Simple_repeat 2 38 0 386 250 202 36 chrX 127784158 127784326 -49189814 - MIR SINE MIR -42 220 25 351 206 149 9 chrX 127784518 127784625 -49189515 + MIR SINE MIR 141 262 0 362 311 156 36 chrX 127785370 127785730 -49188410 + L2 LINE L2 1776 2178 -1136 1389 60 0 0 chrX 127785799 127785965 -49188175 - AluSg/x SINE Alu -10 302 137 305 294 76 0 chrX 127786011 127786130 -49188010 - MIR SINE MIR -30 232 105 250 235 0 0 chrX 127787569 127787620 -49186520 + L2 LINE L2 3256 3306 -7 367 269 117 14 chrX 127788305 127788450 -49185690 - MIR3 SINE MIR -7 201 42 2102 182 106 136 chrX 127789509 127790338 -49183802 + L3 LINE CR1 410 1213 -364 193 300 100 27 chrX 127790468 127790578 -49183562 + L2 LINE L2 3155 3272 0 203 103 26 0 chrX 127790907 127790946 -49183194 + (TA)n Simple_repeat Simple_repeat 2 41 0 705 230 62 55 chrX 127790992 127791249 -49182891 + L1ME4a LINE L1 5552 5810 -311 352 275 79 0 chrX 127791267 127791445 -49182695 + L1ME4a LINE L1 5884 6075 -46 206 146 0 55 chrX 127791623 127791678 -49182462 + (TTTAA)n Simple_repeat Simple_repeat 1 52 0 2358 38 0 72 chrX 127791757 127792076 -49182064 - AluY SINE Alu -15 296 1 180 175 75 0 chrX 127792150 127792190 -49181950 + L2 LINE L2 3223 3265 -7 620 85 0 0 chrX 127792546 127792628 -49181512 - AluS SINE Alu -229 84 3 463 296 50 64 chrX 127792746 127792995 -49181145 - L1MEd LINE L1 -5040 1490 1239 1546 181 32 7 chrX 127792995 127793276 -49180864 + AluJb SINE Alu 1 288 -24 463 296 50 64 chrX 127793276 127793608 -49180532 - L1MEd LINE L1 -5291 1239 917 3954 123 42 20 chrX 127794016 127794747 -49179393 - Tigger3(Golem) DNA MER2_type -1 3028 2282 741 164 0 0 chrX 127794730 127794852 -49179288 - Tigger3(Golem) DNA MER2_type -2907 122 1 * 229 345 82 24 chrX 127794899 127795105 -49179035 + L2 LINE L2 1823 2040 -1274 434 321 72 35 chrX 127795153 127795443 -49178697 + L2 LINE L2 2551 2851 -463 2461 84 3 0 chrX 127795892 127796203 -49177937 - AluSp SINE Alu -1 312 1 2150 165 22 3 chrX 127796227 127796585 -49177555 + MLT1A1 LTR MaLR 1 365 0 1470 201 3 0 chrX 127797843 127798142 -49175998 - L1M4 LINE L1 -1154 4992 4693 603 173 36 124 chrX 127798141 127798390 -49175750 - L1M4 LINE L1 -1714 4432 4206 * 669 221 17 22 chrX 127798371 127798552 -49175588 + L1M4 LINE L1 3484 3663 -2483 * 2935 215 29 14 chrX 127798540 127799190 -49174950 - L1MEd LINE L1 -5863 677 18 1104 137 26 108 chrX 127799191 127799497 -49174643 + Tigger6 DNA MER2_type 1317 1597 0 2373 109 0 3 chrX 127799507 127799818 -49174322 - AluSx SINE Alu -2 310 1 2139 101 21 0 chrX 127799845 127800132 -49174008 + AluSx SINE Alu 1 293 -19 4274 225 62 18 chrX 127800132 127800180 -49173960 + L1ME1 LINE L1 2064 2108 -4107 2240 89 4 0 chrX 127800180 127800482 -49173658 + AluY SINE Alu 1 303 0 4274 225 62 18 chrX 127800482 127801841 -49172299 + L1ME1 LINE L1 2108 3473 -2742 1321 176 25 87 chrX 127801859 127802017 -49172123 + AluJo SINE Alu 1 131 -181 1884 75 3 88 chrX 127802017 127802363 -49171777 + AluY SINE Alu 1 320 0 1321 176 25 87 chrX 127802363 127802526 -49171614 + AluJo SINE Alu 131 303 -9 3742 209 42 20 chrX 127802559 127803645 -49170495 + L1ME1 LINE L1 4293 5401 -824 207 0 0 0 chrX 127803647 127803670 -49170470 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 711 169 0 24 chrX 127803670 127803794 -49170346 - FLAM_C SINE Alu -22 121 1 1323 141 161 20 chrX 127803811 127804104 -49170036 - AluSx SINE Alu 0 328 1 3276 231 15 9 chrX 127804108 127804901 -49169239 + L1ME1 LINE L1 5391 6188 -47 339 171 22 177 chrX 127804801 127804903 -49169237 + L1MA10 LINE L1 6244 6360 -43 * 1651 55 46 0 chrX 127804903 127805120 -49169020 - L1PA11 LINE L1 -6 6168 5942 339 171 22 177 chrX 127805120 127805132 -49169008 + L1MA10 LINE L1 6360 6372 -31 3826 121 14 6 chrX 127805132 127805753 -49168387 - L1MA8 LINE L1 -4 6287 5662 339 171 22 177 chrX 127805753 127805818 -49168322 + L1MA10 LINE L1 6372 6396 -7 2133 102 16 16 chrX 127805831 127806135 -49168005 + AluSx SINE Alu 1 304 -8 1902 116 24 14 chrX 127806300 127806696 -49167444 - AluSg SINE Alu 0 399 1 280 256 129 8 chrX 127807049 127807182 -49166958 - L1MC/D LINE L1 -312 5809 5696 7347 41 3 0 chrX 127807182 127808248 -49165892 - L1PA6 LINE L1 -3 6151 5087 247 240 71 71 chrX 127808922 127809076 -49165064 + L2 LINE L2 2338 2491 -823 356 273 84 52 chrX 127810335 127810584 -49163556 - L1MC4a LINE L1 -1849 5959 5703 1076 240 131 22 chrX 127810648 127811190 -49162950 - L1MC5 LINE L1 -111 7850 7250 512 255 85 55 chrX 127811196 127811431 -49162709 - L1MC4a LINE L1 -2130 5678 5437 341 347 160 25 chrX 127811716 127812073 -49162067 - L2 LINE L2 0 3272 2868 1942 163 0 3 chrX 127812244 127812533 -49161607 + AluJb SINE Alu 1 288 -24 22 56 0 0 chrX 127812533 127812569 -49161571 + AT_rich Low_complexity Low_complexity 1 36 0 309 51 0 0 chrX 127812773 127812812 -49161328 + (TTA)n Simple_repeat Simple_repeat 1 39 0 920 197 21 5 chrX 127813027 127813215 -49160925 + MER3 DNA MER1_type 1 191 -18 23 78 0 0 chrX 127814972 127815023 -49159117 + AT_rich Low_complexity Low_complexity 1 51 0 1239 85 0 18 chrX 127815866 127816030 -49158110 + AluSg/x SINE Alu 133 293 -19 330 217 302 16 chrX 127816058 127816187 -49157953 + MIR3 SINE MIR 40 205 -3 189 74 0 0 chrX 127816221 127816248 -49157892 + (TG)n Simple_repeat Simple_repeat 2 28 0 557 233 76 29 chrX 127816502 127816674 -49157466 + MIR SINE MIR 51 230 -32 1406 181 22 6 chrX 127816859 127817173 -49156967 + MER33 DNA MER1_type 1 319 -5 2351 82 3 0 chrX 127817205 127817496 -49156644 + AluSq SINE Alu 1 292 -21 382 243 4 164 chrX 127817779 127817982 -49156158 + MIR SINE MIR 40 274 12 1011 161 0 0 chrX 127817982 127818162 -49155978 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chrX 127818165 127818188 -49155952 + (GA)n Simple_repeat Simple_repeat 2 24 0 382 243 4 164 chrX 127818188 127818243 -49155897 + MIR SINE MIR 198 260 -2 268 343 7 29 chrX 127818579 127818719 -49155421 + MIR SINE MIR 87 223 -39 1707 155 0 4 chrX 127818723 127818981 -49155159 + AluJo SINE Alu 19 275 -37 308 307 31 63 chrX 127819801 127819928 -49154212 - MIR SINE MIR -68 140 18 206 229 21 125 chrX 127821369 127821465 -49152675 - MIR SINE MIR -10 252 167 406 314 57 0 chrX 127821544 127821668 -49152472 + MIR3 SINE MIR 60 190 -18 21 36 0 0 chrX 127823431 127823459 -49150681 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chrX 127829871 127829891 -49144249 + (TTA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chrX 127832317 127832341 -49141799 + AT_rich Low_complexity Low_complexity 1 24 0 507 200 45 84 chrX 127832866 127832946 -49141194 - MER5A DNA MER1_type -40 149 76 2124 95 3 3 chrX 127832946 127833229 -49140911 - AluSp SINE Alu -9 304 22 507 200 45 84 chrX 127833229 127833303 -49140837 - MER5A DNA MER1_type -113 76 1 221 237 155 31 chrX 127833677 127833774 -49140366 + MIR SINE MIR 86 194 -68 292 278 78 9 chrX 127834219 127834334 -49139806 + MIR3 SINE MIR 81 203 -5 321 245 53 43 chrX 127835192 127835286 -49138854 - MIR3 SINE MIR -25 183 89 263 320 225 5 chrX 127835569 127835791 -49138349 - L2 LINE L2 -481 2833 2563 701 176 50 8 chrX 127835996 127836115 -49138025 + FLAM_C SINE Alu 2 125 -18 660 251 45 25 chrX 127836749 127836803 -49137337 - L2 LINE L2 0 3313 3262 2031 125 24 7 chrX 127836803 127837100 -49137040 - AluSx SINE Alu -10 302 1 660 251 45 25 chrX 127837100 127837244 -49136896 - L2 LINE L2 -51 3262 3111 1468 222 70 7 chrX 127837247 127837660 -49136480 - MLT1C LTR MaLR 0 467 19 206 293 37 37 chrX 127837724 127837806 -49136334 - L2 LINE L2 -254 3059 2978 638 260 37 70 chrX 127837845 127838087 -49136053 - MIR SINE MIR 0 262 29 1703 154 0 18 chrX 127838234 127838506 -49135634 + AluJo SINE Alu 16 282 -30 252 0 0 0 chrX 127840123 127840151 -49133989 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 261 0 0 0 chrX 127840150 127840179 -49133961 + (TG)n Simple_repeat Simple_repeat 2 30 0 192 152 0 0 chrX 127840362 127840395 -49133745 + (TG)n Simple_repeat Simple_repeat 2 34 0 260 290 79 58 chrX 127840473 127840626 -49133514 + MIR3 SINE MIR 10 168 -61 197 296 161 0 chrX 127841059 127841140 -49133000 - MIR SINE MIR -11 251 158 708 280 83 26 chrX 127841237 127841501 -49132639 + L2 LINE L2 3019 3297 -16 1954 154 0 0 chrX 127841511 127841796 -49132344 - AluSx SINE Alu -19 293 9 225 0 0 0 chrX 127841821 127841846 -49132294 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 686 168 0 2 chrX 127841860 127842111 -49132029 + AluJ SINE Alu 1 299 -13 240 259 0 17 chrX 127842158 127842216 -49131924 - MIR SINE MIR -61 147 91 186 268 179 0 chrX 127842594 127842650 -49131490 - MIR SINE MIR -105 103 38 670 204 6 81 chrX 127842838 127842918 -49131222 + MIR SINE MIR 82 144 -118 1920 154 0 0 chrX 127842918 127843198 -49130942 + AluJb SINE Alu 1 280 -32 670 204 6 81 chrX 127843198 127843289 -49130851 + MIR SINE MIR 144 240 -22 201 202 60 0 chrX 127843801 127843885 -49130255 + (TA)n Simple_repeat Simple_repeat 1 89 0 605 94 54 9 chrX 127843888 127844114 -49130026 + (TATAA)n Simple_repeat Simple_repeat 1 236 0 56 39 0 0 chrX 127844114 127844191 -49129949 + AT_rich Low_complexity Low_complexity 1 77 0 312 129 61 12 chrX 127844191 127844354 -49129786 + (TA)n Simple_repeat Simple_repeat 2 172 0 22 35 0 0 chrX 127844362 127844391 -49129749 + AT_rich Low_complexity Low_complexity 1 29 0 227 224 118 24 chrX 127844474 127844559 -49129581 - L2 LINE L2 -926 2388 2296 317 365 8 0 chrX 127844563 127844689 -49129451 - L2 LINE L2 -1173 2141 2015 213 306 0 28 chrX 127844810 127844882 -49129258 + L2 LINE L2 1146 1215 -2099 915 213 17 0 chrX 127845176 127845350 -49128790 + MER69A DNA AcHobo 1 177 0 283 157 48 12 chrX 127845654 127845737 -49128403 + (TA)n Simple_repeat Simple_repeat 2 87 0 330 163 54 7 chrX 127845749 127845896 -49128244 + (TA)n Simple_repeat Simple_repeat 1 154 0 49 32 0 0 chrX 127845896 127845959 -49128181 + AT_rich Low_complexity Low_complexity 1 63 0 775 243 30 42 chrX 127845959 127846222 -49127918 - L1MC4a LINE L1 -1834 5974 5715 279 212 176 0 chrX 127846372 127846457 -49127683 + MIR SINE MIR 152 251 -11 190 348 18 18 chrX 127846487 127846599 -49127541 + L2 LINE L2 1511 1622 -1692 1125 75 21 70 chrX 127846624 127846810 -49127330 - L1MA4 LINE L1 -5 6295 6119 804 255 29 14 chrX 127846853 127847061 -49127079 - MLT1J LTR MaLR -8 503 293 335 230 111 74 chrX 127847132 127847267 -49126873 - MLT1J LTR MaLR -369 142 3 1749 171 3 20 chrX 127847282 127847587 -49126553 - AluJo SINE Alu -12 300 1 287 284 118 12 chrX 127847587 127847745 -49126395 + L2 LINE L2 1721 1899 -1415 373 398 36 20 chrX 127847773 127847969 -49126171 - L2 LINE L2 -6 3266 3068 2302 106 3 0 chrX 127848028 127848339 -49125801 + AluSx SINE Alu 1 312 0 554 114 13 0 chrX 127848473 127848552 -49125588 + MADE1 DNA Mariner 1 80 0 1685 303 104 40 chrX 127848653 127849517 -49124623 - L2 LINE L2 -509 2805 1998 180 0 0 0 chrX 127849517 127849537 -49124603 + (TA)n Simple_repeat Simple_repeat 2 21 0 2172 127 0 0 chrX 127849537 127849836 -49124304 - AluSq SINE Alu -14 299 1 1685 303 104 40 chrX 127849836 127849983 -49124157 - L2 LINE L2 -1315 1999 1728 2271 176 33 33 chrX 127849992 127850447 -49123693 + MSTB2 LTR MaLR 3 457 0 1020 197 21 16 chrX 127850544 127850732 -49123408 + MER5A DNA MER1_type 1 189 0 207 100 0 0 chrX 127850821 127850851 -49123289 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 382 198 207 26 chrX 127850851 127850967 -49123173 - L2 LINE L2 -10 3303 3167 257 232 0 18 chrX 127850978 127851034 -49123106 - L2 LINE L2 -521 2793 2739 * 490 181 0 12 chrX 127851024 127851107 -49123033 + L2 LINE L2 3188 3269 -44 1572 189 34 65 chrX 127851152 127851518 -49122622 - L2 LINE L2 -595 2719 2366 582 265 66 0 chrX 127851518 127851684 -49122456 + MER69A DNA AcHobo 1 177 0 1572 189 34 65 chrX 127851684 127851734 -49122406 - L2 LINE L2 -948 2366 2316 1254 196 34 68 chrX 127851735 127851888 -49122252 + MLT1A2 LTR MaLR 1 158 -216 2149 93 7 4 chrX 127851888 127852166 -49121974 - AluSx SINE Alu -33 279 1 1254 196 34 68 chrX 127852166 127852364 -49121776 + MLT1A2 LTR MaLR 158 340 -34 1671 189 28 31 chrX 127852372 127852576 -49121564 - L2 LINE L2 -1015 2299 2095 2619 158 44 33 chrX 127852576 127853057 -49121083 - MER66B LTR ERV1 0 486 1 1671 189 28 31 chrX 127853057 127853244 -49120896 - L2 LINE L2 -1219 2095 1909 459 270 5 88 chrX 127853261 127853465 -49120675 - L2 LINE L2 -1890 1424 1238 414 0 0 0 chrX 127853527 127853573 -49120567 + (TG)n Simple_repeat Simple_repeat 2 47 0 544 253 208 0 chrX 127853968 127854146 -49119994 - MIR SINE MIR -10 252 38 615 230 146 0 chrX 127854181 127854346 -49119794 - MIR SINE MIR -30 232 44 977 269 187 36 chrX 127854507 127855320 -49118820 - L2 LINE L2 -1052 2262 1327 343 228 96 44 chrX 127855336 127855472 -49118668 - MIR SINE MIR -12 250 108 948 158 0 42 chrX 127855753 127855904 -49118236 + AluJb SINE Alu 142 287 -25 1290 79 0 28 chrX 127855904 127856082 -49118058 + L1PA10 LINE L1 5992 6164 -4 948 158 0 42 chrX 127856082 127856095 -49118045 + AluJb SINE Alu 287 299 -13 244 355 113 8 chrX 127856179 127856435 -49117705 - L2 LINE L2 -2365 949 667 991 155 39 6 chrX 127857286 127857467 -49116673 - MER53 DNA DNA 0 189 3 2262 100 0 13 chrX 127857567 127857867 -49116273 + AluSx SINE Alu 1 296 -16 344 320 138 43 chrX 127857994 127858247 -49115893 + L2 LINE L2 2979 3255 -17 367 225 17 58 chrX 127858280 127858400 -49115740 + MIR3 SINE MIR 88 202 -6 564 128 0 12 chrX 127858479 127858565 -49115575 + MLT1A1 LTR MaLR 1 85 -280 824 275 42 17 chrX 127858692 127858928 -49115212 + MIR SINE MIR 20 261 -1 768 94 0 0 chrX 127859121 127859227 -49114913 + HY1 scRNA scRNA 2 107 -5 353 343 64 12 chrX 127859265 127859305 -49114835 + L2 LINE L2 2172 2208 -1106 1769 175 0 7 chrX 127859305 127859602 -49114538 - AluJb SINE Alu -17 295 1 353 343 64 12 chrX 127859602 127859733 -49114407 + L2 LINE L2 2208 2352 -962 1346 232 63 59 chrX 127859738 127860265 -49113875 - MER39 LTR ERV1 0 707 1 202 238 86 29 chrX 127860269 127860374 -49113766 + L2 LINE L2 2342 2452 -862 1185 220 74 10 chrX 127860945 127861254 -49112886 + L1ME3A LINE L1 5623 5951 -219 180 361 84 0 chrX 127861580 127861663 -49112477 + L2 LINE L2 2977 3066 -206 505 242 39 28 chrX 127861663 127861841 -49112299 - L1MC5 LINE L1 -32 7929 7750 1656 289 89 0 chrX 127863871 127864401 -49109739 + MLT1L LTR MaLR 39 615 0 472 342 81 4 chrX 127864670 127864904 -49109236 + L3 LINE CR1 674 925 -652 404 261 174 36 chrX 127865030 127865180 -49108960 + MIR SINE MIR 15 199 -63 2616 77 149 11 chrX 127865180 127865556 -49108584 - MSTA LTR MaLR 0 428 1 404 261 174 36 chrX 127865556 127865600 -49108540 + MIR SINE MIR 199 236 -26 661 328 149 12 chrX 127865616 127866025 -49108115 + L3 LINE CR1 1006 1470 -107 2222 84 4 0 chrX 127866287 127866560 -49107580 + AluSp SINE Alu 1 274 -39 23 78 0 0 chrX 127866625 127866676 -49107464 + AT_rich Low_complexity Low_complexity 1 51 0 3113 143 8 13 chrX 127866802 127867270 -49106870 - MLT1C LTR MaLR -1 466 1 518 310 37 25 chrX 127867270 127867515 -49106625 - L1ME LINE L1 -558 5563 5316 1851 164 6 13 chrX 127868145 127868456 -49105684 + AluJo SINE Alu 1 309 -3 21 36 0 0 chrX 127868723 127868751 -49105389 + AT_rich Low_complexity Low_complexity 1 28 0 474 203 229 55 chrX 127868894 127869165 -49104975 - MER5C DNA MER1_type -6 318 1 2301 70 3 0 chrX 127869457 127869770 -49104370 + AluSp SINE Alu 1 314 0 667 292 77 18 chrX 127870133 127870243 -49103897 - ERVL LTR ERVL -903 4861 4759 252 0 0 0 chrX 127870243 127870271 -49103869 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 306 0 0 0 chrX 127870270 127870304 -49103836 + (GA)n Simple_repeat Simple_repeat 2 35 0 667 292 77 18 chrX 127870271 127870467 -49103673 - ERVL LTR ERVL -1005 4759 4572 618 267 47 6 chrX 127870475 127870647 -49103493 + HERVL LTR ERVL 4217 4395 -1259 442 180 30 40 chrX 127870767 127870867 -49103273 - Charlie4 DNA MER1_type -33 1928 1830 315 262 12 0 chrX 127870930 127871014 -49103126 - ERVL LTR ERVL -1809 3955 3871 993 240 0 10 chrX 127871025 127871225 -49102915 + MER58A DNA MER1_type 27 224 0 1792 312 115 31 chrX 127871251 127872354 -49101786 - ERVL LTR ERVL -1922 3842 2647 925 151 17 17 chrX 127872375 127872554 -49101586 - MER96B DNA MER1_type? -231 186 8 1225 323 101 42 chrX 127872722 127873565 -49100575 - ERVL LTR ERVL -3380 2384 1492 2266 243 28 87 chrX 127873642 127874071 -49100069 + L1MC4 LINE L1 7140 7592 -450 1891 51 0 17 chrX 127874071 127874306 -49099834 + L1PA8 LINE L1 5941 6171 -1 2266 243 28 87 chrX 127874306 127874599 -49099541 + L1MC4 LINE L1 7592 7795 -247 2273 96 6 22 chrX 127874599 127874913 -49099227 + AluY SINE Alu 1 309 -2 2266 243 28 87 chrX 127874913 127875148 -49098992 + L1MC4 LINE L1 7795 8042 0 1948 138 33 16 chrX 127875378 127875736 -49098404 + AluJo SINE Alu 1 363 0 274 247 25 95 chrX 127876504 127876662 -49097478 - MIR SINE MIR -39 223 77 511 188 8 17 chrX 127877802 127877919 -49096221 + L1M4 LINE L1 12 127 -6415 * 888 156 3 3 chrX 127877910 127878075 -49096065 + L1MB7 LINE L1 5327 5491 -674 41848 43 1 1 chrX 127878133 127884279 -49089861 - L1PA4 LINE L1 -4 6151 1 535 241 9 0 chrX 127884289 127884401 -49089739 + L1MB7 LINE L1 5525 5637 -541 216 0 0 0 chrX 127884401 127884425 -49089715 + (TA)n Simple_repeat Simple_repeat 2 25 0 2796 172 12 4 chrX 127884425 127884920 -49089220 + L1MB7 LINE L1 5673 6171 -13 2262 113 0 7 chrX 127885245 127885547 -49088593 - AluSq SINE Alu -13 300 1 2408 88 7 0 chrX 127886316 127886622 -49087518 + AluSc SINE Alu 1 308 -1 568 175 0 1 chrX 127887577 127887679 -49086461 + L1ME1 LINE L1 5715 5817 -349 1815 157 56 0 chrX 127887679 127887989 -49086151 + L1MA4 LINE L1 5949 6290 -10 568 175 0 1 chrX 127887989 127888005 -49086135 + L1ME1 LINE L1 5817 5832 -334 1619 203 16 22 chrX 127888007 127888376 -49085764 + L1MB8 LINE L1 5808 6174 -4 492 91 39 0 chrX 127888388 127888465 -49085675 + L1MB7 LINE L1 6105 6184 0 4282 194 6 13 chrX 127888467 127889610 -49084530 + L1MB2 LINE L1 4488 5620 -560 * 6823 117 42 9 chrX 127889596 127890927 -49083213 + L1MA4 LINE L1 4927 6294 -6 2990 174 34 9 chrX 127890927 127891484 -49082656 + L1MB2 LINE L1 5594 6169 -2 2803 200 24 4 chrX 127893364 127893898 -49080242 + Cheshire DNA MER1_type 1 545 -1875 1350 86 0 0 chrX 127893908 127894071 -49080069 + AluSc SINE Alu 61 223 -86 1947 155 52 6 chrX 127894175 127894537 -49079603 + Cheshire DNA MER1_type 313 691 -1729 2525 176 14 14 chrX 127895268 127895318 -49078822 + MSTB1 LTR MaLR 1 50 -382 2649 141 41 0 chrX 127895318 127895729 -49078411 - MSTA LTR MaLR 0 428 1 2525 176 14 14 chrX 127895729 127896110 -49078030 + MSTB1 LTR MaLR 49 432 0 2166 123 0 7 chrX 127896594 127896894 -49077246 - AluSx SINE Alu -14 298 1 400 193 0 28 chrX 127896894 127897024 -49077116 - L1MC3 LINE L1 -25 7760 7530 1460 189 40 85 chrX 127897037 127897162 -49076978 - MLT1B LTR MaLR -6 384 255 3662 62 4 21 chrX 127897162 127897627 -49076513 - L1PA8 LINE L1 0 6172 5716 1460 189 40 85 chrX 127897627 127897801 -49076339 - MLT1B LTR MaLR -135 255 103 2217 122 3 0 chrX 127897801 127898097 -49076043 - AluSx SINE Alu -15 297 1 1460 189 40 85 chrX 127898097 127898171 -49075969 - MLT1B LTR MaLR -287 103 27 2150 121 0 0 chrX 127898182 127898471 -49075669 - L1PA13 LINE L1 -19 6144 5856 1610 173 90 42 chrX 127898471 127898733 -49075407 - MLT1A1-int LTR MaLR -715 656 408 1689 177 3 7 chrX 127898733 127899027 -49075113 - AluJb SINE Alu -19 293 1 1610 173 90 42 chrX 127899027 127899159 -49074981 - MLT1A1-int LTR MaLR -963 408 122 2294 95 33 7 chrX 127899198 127899503 -49074637 + AluSp SINE Alu 1 313 0 1880 175 20 11 chrX 127899516 127899851 -49074289 - MLT1A1 LTR MaLR -26 406 1 811 105 32 0 chrX 127899851 127899975 -49074165 - MLT1B-int LTR MaLR -1243 128 1 2084 165 42 21 chrX 127899975 127900357 -49073783 - MLT1B LTR MaLR 0 390 1 3758 255 23 20 chrX 127900878 127901820 -49072320 + L1M4 LINE L1 3 947 -5595 3309 152 0 38 chrX 127901826 127902360 -49071780 - MLT2B1 LTR ERVL -6 514 1 34905 131 38 32 chrX 127902360 127903120 -49071020 - ERVL-B1 LTR ERVL -7 5757 5003 3576 76 2 5 chrX 127903120 127903568 -49070572 - L1PA7 LINE L1 -1 6153 5707 34905 131 38 32 chrX 127903568 127907567 -49066573 - ERVL-B1 LTR ERVL -761 5003 1030 230 176 0 88 chrX 127907567 127907635 -49066505 + Charlie1 DNA MER1_type 2245 2306 -455 34905 131 38 32 chrX 127907635 127908378 -49065762 - ERVL-B1 LTR ERVL -4734 1030 149 186 103 0 0 chrX 127908378 127908407 -49065733 + (CTATG)n Simple_repeat Simple_repeat 5 33 0 34905 131 38 32 chrX 127908407 127908468 -49065672 - ERVL-B1 LTR ERVL -5615 149 90 1371 150 34 8 chrX 127908468 127908702 -49065438 - LTR47B LTR ERVL 0 443 204 947 231 240 50 chrX 127908734 127908774 -49065366 + L1M4 LINE L1 1894 1925 -4721 2361 92 3 3 chrX 127908774 127909079 -49065061 + AluSp SINE Alu 1 305 -8 947 231 240 50 chrX 127909079 127909522 -49064618 + L1M4 LINE L1 1925 2469 -4177 1857 157 10 0 chrX 127910207 127910500 -49063640 + AluJb SINE Alu 1 296 -16 225 0 0 0 chrX 127910508 127910533 -49063607 + (CA)n Simple_repeat Simple_repeat 2 26 0 236 239 75 30 chrX 127911224 127911291 -49062849 - L2 LINE L2 -5 3267 3198 2689 183 14 0 chrX 127911291 127911711 -49062429 + MSTB LTR MaLR 1 426 0 397 149 0 0 chrX 127911779 127911846 -49062294 + MIR SINE MIR 74 140 -122 14077 180 15 24 chrX 127911846 127915851 -49058289 - L1PA16 LINE L1 0 6869 2907 41242 69 8 2 chrX 127915857 127921970 -49052170 - L1PA5 LINE L1 -1 6153 5 6020 207 16 15 chrX 127921971 127923425 -49050715 - L1PA16 LINE L1 -3931 2918 1452 1409 214 0 43 chrX 127923848 127924151 -49049989 - L1PA16 LINE L1 -6116 733 444 1005 128 0 0 chrX 127924597 127924738 -49049402 + AluSc SINE Alu 1 141 -168 1504 178 14 24 chrX 127925703 127925995 -49048145 - AluJo SINE Alu -23 289 1 292 286 134 9 chrX 127926209 127926321 -49047819 + L3 LINE CR1 1445 1570 -7 2764 194 45 25 chrX 127926696 127927246 -49046894 - MER68 LTR ERV1 0 562 2 267 216 136 8 chrX 127928395 127928520 -49045620 - MER113 DNA MER1_type? -358 163 23 444 307 54 24 chrX 127928537 127928647 -49045493 + MIR SINE MIR 77 195 -67 4626 111 33 73 chrX 127928647 127929465 -49044675 + LTR1 LTR ERV1 1 785 0 444 307 54 24 chrX 127929465 127929520 -49044620 + MIR SINE MIR 195 247 -15 * 754 251 48 31 chrX 127929515 127929742 -49044398 - MIR SINE MIR 0 262 32 307 345 78 26 chrX 127931028 127931144 -49042996 - L1M2 LINE L1 -6072 777 656 325 268 101 25 chrX 127931561 127931759 -49042381 - L1MC4 LINE L1 -1 8041 7829 615 217 18 18 chrX 127931803 127931969 -49042171 - L1ME2 LINE L1 -10 6154 5989 1774 176 70 44 chrX 127931973 127932262 -49041878 - MLT1C LTR MaLR 0 467 187 198 0 0 0 chrX 127932262 127932284 -49041856 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1611 46 0 0 chrX 127932284 127932478 -49041662 - L1PA3 LINE L1 -18 6137 5944 1774 176 70 44 chrX 127932478 127932642 -49041498 - MLT1C LTR MaLR -279 188 1 581 183 43 86 chrX 127932645 127932731 -49041409 - L1ME2 LINE L1 -173 5991 5903 1893 163 3 10 chrX 127932731 127933037 -49041103 - AluJo SINE Alu -8 304 1 581 183 43 86 chrX 127933037 127933136 -49041004 - L1ME2 LINE L1 -261 5903 5814 436 62 15 0 chrX 127933146 127933211 -49040929 - HY3 scRNA scRNA -1 100 35 1063 145 45 0 chrX 127933212 127933412 -49040728 - L1ME2 LINE L1 -342 5822 5614 5295 35 0 0 chrX 127933815 127934442 -49039698 - L1PA4 LINE L1 -5 6150 5524 253 333 132 56 chrX 127934724 127935027 -49039113 - L3b LINE CR1 -42 1541 1216 447 316 18 42 chrX 127935557 127935725 -49038415 + MIR SINE MIR 1 164 -98 331 97 113 0 chrX 127935725 127935787 -49038353 + L1ME2 LINE L1 5761 5829 -333 234 167 0 0 chrX 127935785 127935833 -49038307 + L1MB3 LINE L1 6136 6183 0 * 435 138 0 23 chrX 127935837 127935924 -49038216 + L1MB8 LINE L1 6093 6177 -1 395 154 13 0 chrX 127935925 127936003 -49038137 + L1ME2 LINE L1 5824 5902 -262 538 234 50 4 chrX 127936031 127936224 -49037916 + L1MA10 LINE L1 5977 6332 -2 1102 201 19 133 chrX 127936676 127936783 -49037357 - MLT1A1 LTR MaLR 0 365 247 2167 78 14 7 chrX 127936783 127937099 -49037041 + AluY SINE Alu 1 318 0 1102 201 19 133 chrX 127937099 127937402 -49036738 - MLT1A1 LTR MaLR -118 247 1 772 244 41 41 chrX 127937463 127937705 -49036435 - MLT1E1 LTR MaLR 0 654 413 849 165 8 0 chrX 127937806 127937939 -49036201 - AluJo SINE Alu -178 134 1 750 231 79 9 chrX 127937973 127938189 -49035951 - MLT1E1 LTR MaLR -409 245 15 745 116 22 14 chrX 127938553 127938691 -49035449 + L1MB7 LINE L1 5358 5496 -688 * 38516 66 6 6 chrX 127938686 127944827 -49029313 + L1PA5 LINE L1 11 6153 -1 3383 167 57 6 chrX 127944833 127945505 -49028635 + L1MB7 LINE L1 5476 6181 -3 471 242 208 0 chrX 127945737 127945886 -49028254 + MER5A DNA MER1_type 9 188 -1 21 0 0 0 chrX 127946966 127946987 -49027153 + AT_rich Low_complexity Low_complexity 1 21 0 3242 164 11 6 chrX 127946996 127947624 -49026516 + L1M2 LINE L1 4362 4992 -1154 8131 91 13 2 chrX 127947624 127949586 -49024554 + L1PA8 LINE L1 4209 6180 0 2271 99 3 0 chrX 127949938 127950230 -49023910 - AluSg SINE Alu -17 293 1 21 0 0 0 chrX 127950712 127950733 -49023407 + AT_rich Low_complexity Low_complexity 1 21 0 41564 44 2 1 chrX 127951154 127957300 -49016840 + L1PA4 LINE L1 1 6153 -2 2503 134 15 45 chrX 127957460 127958200 -49015940 + L1M2 LINE L1 4983 5693 -607 301 360 140 28 chrX 127958200 127958706 -49015434 + L2 LINE L2 273 860 -2454 1857 156 0 14 chrX 127958706 127959001 -49015139 + AluJb SINE Alu 1 291 -21 301 360 140 28 chrX 127959001 127959103 -49015037 + L2 LINE L2 860 949 -2365 358 278 16 32 chrX 127959119 127959245 -49014895 + MER94 DNA DNA 11 134 0 1825 149 7 14 chrX 127959577 127959865 -49014275 - AluJb SINE Alu -26 286 1 462 239 115 31 chrX 127959868 127960094 -49014046 - L1MDa LINE L1 -1922 4618 4374 418 230 32 8 chrX 127960096 127960222 -49013918 - L1MDa LINE L1 -2240 4300 4172 852 207 94 113 chrX 127960226 127960607 -49013533 - MLT1A1 LTR MaLR 0 365 23 247 301 16 8 chrX 127960742 127960865 -49013275 - L1MDa LINE L1 -3632 2908 2785 308 211 206 0 chrX 127960920 127961094 -49013046 - L1MDa LINE L1 -3846 2694 2486 2403 88 3 0 chrX 127961104 127961409 -49012731 - AluY SINE Alu -5 306 1 400 105 0 0 chrX 127961832 127961889 -49012251 - FLAM SINE Alu -19 124 68 390 324 81 24 chrX 127961995 127962242 -49011898 - L1MDa LINE L1 -5295 1235 975 21 0 0 0 chrX 127962526 127962547 -49011593 + AT_rich Low_complexity Low_complexity 1 21 0 325 323 85 45 chrX 127962637 127962838 -49011302 - L2 LINE L2 -453 2861 2653 442 180 211 8 chrX 127962888 127963016 -49011124 + HsTC2 DNA Tc2 1 154 -1744 1013 205 43 16 chrX 127963027 127963443 -49010697 + HsTC2 DNA Tc2 1250 1896 -2 238 356 27 14 chrX 127963466 127963612 -49010528 + L2 LINE L2 2923 3070 -202 921 125 15 7 chrX 127964154 127964290 -49009850 - AluSq/x SINE Alu -176 137 1 476 240 90 96 chrX 127964485 127964818 -49009322 - L1ME4a LINE L1 -219 5902 5572 2472 104 8 37 chrX 127964845 127965220 -49008920 - THE1B LTR MaLR 0 364 1 231 273 0 15 chrX 127965334 127965400 -49008740 + MLT1K LTR MaLR 154 218 -370 322 289 116 26 chrX 127965490 127965722 -49008418 + MLT1L LTR MaLR 363 615 0 229 182 0 0 chrX 127965937 127965981 -49008159 - L2 LINE L2 0 3313 3270 1153 238 184 38 chrX 127966114 127966593 -49007547 - L2 LINE L2 0 3313 2768 693 164 0 9 chrX 127966642 127966758 -49007382 + FLAM_C SINE Alu 3 117 -26 195 42 0 0 chrX 127966761 127966785 -49007355 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1753 168 0 31 chrX 127966825 127967144 -49006996 + AluJo SINE Alu 1 310 0 2093 141 0 0 chrX 127967218 127967509 -49006631 - AluSq SINE Alu -20 293 3 2339 109 0 6 chrX 127967521 127967833 -49006307 - AluSq SINE Alu -3 310 1 516 217 87 9 chrX 127967919 127968034 -49006106 - L2 LINE L2 0 3313 3190 718 210 171 6 chrX 127969162 127969338 -49004802 - MIR SINE MIR -57 205 1 3068 74 0 0 chrX 127970093 127970486 -49003654 + L1PA7 LINE L1 5754 6146 -8 693 281 47 25 chrX 127970770 127971005 -49003135 + MIR SINE MIR 6 245 -17 2274 97 40 0 chrX 127971834 127972132 -49002008 - AluSg SINE Alu 0 310 1 1733 166 51 0 chrX 127972160 127972456 -49001684 - AluJb SINE Alu -1 311 1 249 341 0 12 chrX 127972635 127972717 -49001423 - L2 LINE L2 -1 3271 3191 1759 181 0 6 chrX 127973268 127973582 -49000558 - AluJb SINE Alu 0 312 1 372 353 39 35 chrX 127973630 127973916 -49000224 - L1M4 LINE L1 -2281 3865 3579 369 282 69 25 chrX 127973956 127974318 -48999822 - L1M4 LINE L1 -2658 3488 3111 237 196 0 0 chrX 127975037 127975088 -48999052 + GA-rich Low_complexity Low_complexity 1 51 0 1004 265 123 38 chrX 127975309 127975635 -48998505 + L2 LINE L2 2791 3185 -128 1769 197 0 3 chrX 127975635 127975944 -48998196 - AluJb SINE Alu -4 308 1 1004 265 123 38 chrX 127975944 127976085 -48998055 + L2 LINE L2 3185 3313 0 211 200 0 0 chrX 127976091 127976126 -48998014 - L2 LINE L2 -37 3235 3201 692 273 52 5 chrX 127976226 127976420 -48997720 + MIR SINE MIR 31 233 -29 197 280 53 13 chrX 127977013 127977088 -48997052 - MIR3 SINE MIR -17 191 114 267 307 86 21 chrX 127977226 127977366 -48996774 - L2 LINE L2 -1 3312 3164 1647 133 110 3 chrX 127977600 127977917 -48996223 + L1MB8 LINE L1 5797 6147 -31 2069 125 13 0 chrX 127978022 127978326 -48995814 + AluSx SINE Alu 1 308 -4 703 226 92 12 chrX 127978326 127978490 -48995650 - MIR SINE MIR -85 177 1 1584 290 113 33 chrX 127978498 127979272 -48994868 - L2 LINE L2 -495 2819 1961 2274 91 10 0 chrX 127979272 127979569 -48994571 + AluSq SINE Alu 1 300 -13 1584 290 113 33 chrX 127979569 127979701 -48994439 - L2 LINE L2 -1353 1961 1841 424 226 8 68 chrX 127980064 127980197 -48993943 + MER103 DNA DNA 41 165 -1 189 107 0 0 chrX 127980494 127980522 -48993618 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 384 203 0 190 chrX 127980527 127980690 -48993450 - L2 LINE L2 -19 3294 3163 2218 115 23 0 chrX 127980863 127981167 -48992973 - AluSx SINE Alu -1 311 1 377 309 62 0 chrX 127981418 127981515 -48992625 - MIR SINE MIR -61 147 45 2135 96 0 31 chrX 127981992 127982285 -48991855 + AluSx SINE Alu 1 284 -28 791 306 30 8 chrX 127982493 127982728 -48991412 - MIR SINE MIR -2 260 21 1003 282 93 18 chrX 127982730 127983116 -48991024 - LTR16B LTR ERVL -2 462 48 1292 133 18 53 chrX 127983128 127983354 -48990786 + MER20 DNA MER1_type 2 219 0 472 295 108 0 chrX 127983538 127983677 -48990463 + L2 LINE L2 3118 3271 -1 779 341 41 66 chrX 127983762 127983917 -48990223 + L2 LINE L2 2289 2446 -868 1798 184 3 13 chrX 127983917 127984232 -48989908 + AluJo SINE Alu 1 312 0 2367 95 0 40 chrX 127984235 127984561 -48989579 + AluSq SINE Alu 1 313 0 779 341 41 66 chrX 127984561 127985005 -48989135 + L2 LINE L2 2448 2877 -437 1112 168 31 21 chrX 127985006 127985197 -48988943 + MER20 DNA MER1_type 7 199 -20 748 244 84 71 chrX 127985255 127985566 -48988574 + L2 LINE L2 2955 3269 -3 3894 30 2 0 chrX 127985663 127986096 -48988044 + L1PA6 LINE L1 5717 6150 -4 440 143 86 0 chrX 127986126 127986196 -48987944 + AluS SINE Alu 2 77 -236 2227 111 17 0 chrX 127986393 127986690 -48987450 - AluSq SINE Alu -11 302 1 2327 96 3 0 chrX 127986887 127987179 -48986961 + AluSx SINE Alu 1 293 -19 427 271 31 54 chrX 127987239 127987368 -48986772 - L2 LINE L2 0 3313 3188 231 333 0 0 chrX 127987997 127988072 -48986068 + MIR SINE MIR 187 261 -1 906 249 46 3 chrX 127988382 127988801 -48985339 + LTR33 LTR ERVL 48 519 -2 355 229 0 0 chrX 127988818 127988888 -48985252 + L2 LINE L2 3199 3268 -4 394 305 202 10 chrX 127989453 127989656 -48984484 + MIR SINE MIR 8 249 -13 1878 134 7 14 chrX 127989665 127989976 -48984164 - AluJb SINE Alu 0 309 1 239 337 51 31 chrX 127990201 127990299 -48983841 + L2 LINE L2 3078 3177 -95 22 0 0 0 chrX 127990332 127990354 -48983786 + AT_rich Low_complexity Low_complexity 1 22 0 486 241 55 128 chrX 127991066 127991340 -48982800 - L2 LINE L2 -2 3270 3017 183 42 0 0 chrX 127991983 127992007 -48982133 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 3541 145 40 14 chrX 127992363 127992858 -48981282 - L1MA9 LINE L1 -22 6290 5774 414 100 0 0 chrX 127992858 127992918 -48981222 + (TG)n Simple_repeat Simple_repeat 1 60 0 3541 145 40 14 chrX 127992918 127993041 -48981099 - L1MA9 LINE L1 -538 5774 5656 273 98 0 0 chrX 127993314 127993355 -48980785 + (GA)n Simple_repeat Simple_repeat 2 42 0 3939 126 12 0 chrX 127994625 127995197 -48978943 - L1MB2 LINE L1 -1 6170 5592 446 93 0 0 chrX 127995197 127995251 -48978889 - FLAM SINE Alu -24 119 66 395 234 0 65 chrX 127995418 127995525 -48978615 + L2 LINE L2 3174 3273 -40 249 220 0 0 chrX 127995532 127995582 -48978558 - L2 LINE L2 0 3313 3264 204 339 15 0 chrX 127997071 127997136 -48977004 + L2 LINE L2 3236 3301 -12 526 154 10 35 chrX 127997398 127997427 -48976713 + CT-rich Low_complexity Low_complexity 1 29 -329 1372 38 0 0 chrX 127997427 127997585 -48976555 - L1PA4 LINE L1 0 6155 5998 526 154 10 35 chrX 127997585 127997766 -48976374 + CT-rich Low_complexity Low_complexity 29 358 0 199 238 0 0 chrX 127997769 127997811 -48976329 + L3b LINE CR1 1389 1430 -153 267 79 0 0 chrX 127997941 127997979 -48976161 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2197 112 0 3 chrX 127998563 127998859 -48975281 + AluSg SINE Alu 1 295 -15 2318 72 17 3 chrX 127998874 127999167 -48974973 - AluY SINE Alu -14 297 1 790 139 31 39 chrX 127999174 127999303 -48974837 - FLAM_C SINE Alu -14 129 2 571 231 231 14 chrX 127999563 127999771 -48974369 - MIR SINE MIR -2 260 8 222 319 28 0 chrX 128000282 128000354 -48973786 + L3b LINE CR1 1430 1503 -80 2205 125 0 0 chrX 128001253 128001565 -48972575 + AluSx SINE Alu 1 312 0 312 137 0 0 chrX 128002162 128002213 -48971927 + (CA)n Simple_repeat Simple_repeat 2 52 0 307 313 0 87 chrX 128003236 128003386 -48970754 + MIR SINE MIR 47 183 -79 1794 138 7 43 chrX 128003848 128004184 -48969956 + AluSq SINE Alu 1 313 0 223 284 104 30 chrX 128005241 128005308 -48968832 + L2 LINE L2 3199 3270 -43 199 238 0 0 chrX 128005285 128005327 -48968813 + MIR SINE MIR 217 258 -4 * 2307 157 45 0 chrX 128005619 128005995 -48968145 - L1MB1 LINE L1 -7 6161 5769 2158 75 0 11 chrX 128005995 128006271 -48967869 - L1PA12 LINE L1 -1 6167 5892 1893 131 34 3 chrX 128006271 128006569 -48967571 - L1MB1 LINE L1 -388 5780 5474 414 326 72 14 chrX 128006583 128006721 -48967419 - MIR SINE MIR -115 147 2 21 57 0 0 chrX 128007355 128007390 -48966750 + AT_rich Low_complexity Low_complexity 1 35 0 2082 114 14 0 chrX 128007503 128007807 -48966333 - AluSx SINE Alu 0 308 1 217 290 150 10 chrX 128007935 128008035 -48966105 - L2 LINE L2 -2 3311 3198 584 340 10 5 chrX 128008038 128008238 -48965902 - MIR3 SINE MIR -4 204 4 742 183 83 124 chrX 128008957 128009193 -48964947 - MER5C DNA MER1_type 0 324 105 1446 185 27 34 chrX 128009193 128009490 -48964650 + AluJb SINE Alu 1 295 -17 742 183 83 124 chrX 128009490 128009591 -48964549 - MER5C DNA MER1_type -219 105 1 2208 97 0 0 chrX 128009843 128010121 -48964019 + AluSg SINE Alu 2 279 -31 195 69 0 0 chrX 128010121 128010150 -48963990 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 320 252 78 9 chrX 128012642 128012757 -48961383 + MER113 DNA MER1_type? 9 131 -390 24 0 0 0 chrX 128012837 128012861 -48961279 + AT_rich Low_complexity Low_complexity 1 24 0 733 294 126 39 chrX 128013357 128014105 -48960035 + L2 LINE L2 2459 3272 0 2486 80 0 3 chrX 128014469 128014780 -48959360 - AluSg SINE Alu 0 310 1 24 96 0 0 chrX 128015659 128015732 -48958408 + GC_rich Low_complexity Low_complexity 1 73 0 342 159 0 0 chrX 128015773 128015842 -48958298 + (CCCCG)n Simple_repeat Simple_repeat 4 72 0 202 250 18 54 chrX 128018249 128018305 -48955835 - L2 LINE L2 -13 3259 3206 366 289 48 0 chrX 128020103 128020207 -48953933 - L2 LINE L2 -40 3232 3124 493 282 38 15 chrX 128022616 128022747 -48951393 + L2 LINE L2 3139 3272 0 2171 129 0 10 chrX 128023232 128023541 -48950599 + AluSx SINE Alu 1 306 -6 223 307 64 57 chrX 128024161 128024301 -48949839 + L2 LINE L2 3170 3310 -3 351 0 0 0 chrX 128024498 128024537 -48949603 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2050 120 0 0 chrX 128024541 128024817 -48949323 - AluSx SINE Alu -24 288 13 394 216 128 32 chrX 128025702 128025827 -48948313 - L2 LINE L2 0 3272 3136 617 121 0 0 chrX 128025946 128026029 -48948111 + FRAM SINE Alu 74 156 -20 278 176 0 20 chrX 128026436 128026487 -48947653 + L2 LINE L2 3264 3313 0 609 292 13 30 chrX 128026497 128026733 -48947407 - L2 LINE L2 -921 2393 2162 181 253 172 11 chrX 128026737 128026824 -48947316 - L2 LINE L2 -1037 2277 2177 1745 181 3 0 chrX 128027115 128027431 -48946709 + AluJb SINE Alu 1 317 0 720 225 136 24 chrX 128028015 128028228 -48945912 - MIR SINE MIR -6 256 20 503 319 132 32 chrX 128028310 128028774 -48945366 + L2 LINE L2 2018 2527 -787 965 230 111 0 chrX 128032833 128033059 -48941081 - MIR SINE MIR 0 262 12 1685 173 20 17 chrX 128033537 128033869 -48940271 + AluSq SINE Alu 1 313 0 211 274 88 53 chrX 128034943 128035056 -48939084 + L3b LINE CR1 1320 1436 -147 1001 175 84 149 chrX 128035767 128036311 -48937829 - MLT1C LTR MaLR 0 467 6 191 292 0 0 chrX 128036473 128036521 -48937619 - MIR SINE MIR -63 145 98 261 254 17 0 chrX 128036592 128036651 -48937489 - MIR SINE MIR -63 145 86 578 118 29 10 chrX 128036752 128036854 -48937286 + MLT1C LTR MaLR 364 467 0 374 300 39 31 chrX 128037446 128037576 -48936564 - L3 LINE CR1 -18 1559 1429 396 333 45 0 chrX 128037614 128037746 -48936394 - L2 LINE L2 -1 3312 3175 788 216 39 22 chrX 128038014 128038195 -48935945 - MIR SINE MIR -73 189 6 260 237 155 10 chrX 128038459 128038556 -48935584 - MIR3 SINE MIR -33 175 65 185 279 82 0 chrX 128039097 128039158 -48934982 - L2 LINE L2 -61 3252 3187 399 317 137 15 chrX 128039480 128039751 -48934389 - L2 LINE L2 -568 2746 2443 454 325 56 0 chrX 128039762 128039888 -48934252 + L2 LINE L2 3136 3268 -4 304 238 88 81 chrX 128041043 128041203 -48932937 - L3 LINE CR1 -5 1572 1412 188 312 111 51 chrX 128041141 128041375 -48932765 + L2 LINE L2 2716 2963 -351 * 652 216 1 3 chrX 128041472 128041622 -48932518 - L1ME2 LINE L1 -3 6331 6023 518 317 82 24 chrX 128041730 128041938 -48932202 - MIR SINE MIR -5 257 38 1449 92 0 65 chrX 128042560 128042789 -48931351 - AluSg/x SINE Alu -11 299 86 192 333 30 0 chrX 128042818 128042884 -48931256 - L3 LINE CR1 -1318 259 192 1954 134 19 32 chrX 128042890 128043204 -48930936 - AluJo SINE Alu 0 312 3 191 279 0 0 chrX 128043343 128043386 -48930754 - L2 LINE L2 -94 3219 3177 307 395 62 0 chrX 128043392 128043521 -48930619 - L3 LINE CR1 -1425 152 16 24 32 0 0 chrX 128043600 128043631 -48930509 + AT_rich Low_complexity Low_complexity 1 31 0 406 303 8 45 chrX 128045821 128045917 -48928223 + L2 LINE L2 3146 3237 -35 1725 220 38 49 chrX 128045917 128046386 -48927754 - LTR16B LTR ERVL 0 464 1 406 303 8 45 chrX 128046386 128046421 -48927719 + L2 LINE L2 3237 3272 0 2391 76 0 3 chrX 128046424 128046726 -48927414 + AluSq SINE Alu 9 309 -4 910 98 0 0 chrX 128046979 128047102 -48927038 + AluSp/q SINE Alu 190 312 -1 1326 228 19 41 chrX 128047118 128047531 -48926609 - L1ME1 LINE L1 -5 6161 5758 812 169 152 0 chrX 128047531 128047709 -48926431 + L2 LINE L2 3103 3307 -6 211 176 0 0 chrX 128049049 128049083 -48925057 + (TGG)n Simple_repeat Simple_repeat 2 35 0 992 247 37 21 chrX 128049083 128049326 -48924814 - MIR SINE MIR -1 261 15 192 125 0 0 chrX 128050334 128050366 -48923774 + (TC)n Simple_repeat Simple_repeat 1 32 0 423 0 0 0 chrX 128050370 128050417 -48923723 + (CA)n Simple_repeat Simple_repeat 1 47 0 578 194 93 0 chrX 128051424 128051553 -48922587 - MIR SINE MIR 0 262 122 479 254 28 28 chrX 128052289 128052431 -48921709 + MIR SINE MIR 23 164 -98 851 255 39 5 chrX 128055007 128055215 -48918925 - MIR SINE MIR -43 219 5 610 183 49 37 chrX 128055509 128055673 -48918467 - MER69A DNA AcHobo -1 176 11 1357 112 0 0 chrX 128055683 128055870 -48918270 - AluSg/x SINE Alu -2 310 124 1947 144 0 0 chrX 128056071 128056356 -48917784 - AluJb SINE Alu -27 285 1 250 276 40 14 chrX 128056475 128056583 -48917557 + MIR SINE MIR 9 120 -88 30 27 0 0 chrX 128056770 128056807 -48917333 + AT_rich Low_complexity Low_complexity 1 37 0 327 235 12 0 chrX 128056827 128056912 -48917228 - L1ME4a LINE L1 -87 6034 5949 254 328 168 15 chrX 128057223 128057354 -48916786 + L2 LINE L2 3117 3267 -5 318 302 62 31 chrX 128058209 128058338 -48915802 + MIR SINE MIR 127 259 -3 27 29 0 0 chrX 128058549 128058583 -48915557 + AT_rich Low_complexity Low_complexity 1 34 0 260 221 18 71 chrX 128058788 128058901 -48915239 - L1ME4a LINE L1 -48 6073 5967 563 270 62 22 chrX 128059040 128059266 -48914874 - L1ME4a LINE L1 -332 5789 5555 769 41 0 0 chrX 128059302 128059400 -48914740 - L1MA1 LINE L1 0 6302 6205 321 311 70 23 chrX 128059803 128059974 -48914166 + MIR SINE MIR 37 216 -46 481 264 67 41 chrX 128060922 128061103 -48913037 - MIR SINE MIR -61 201 9 783 244 129 22 chrX 128063091 128063316 -48910824 + MIR SINE MIR 8 256 -6 262 188 69 40 chrX 128063733 128063834 -48910306 - L1ME4a LINE L1 -18 6103 6000 630 304 12 6 chrX 128064242 128064403 -48909737 + MIR3 SINE MIR 23 184 -24 186 43 0 0 chrX 128064437 128064460 -48909680 + (TCTG)n Simple_repeat Simple_repeat 1 23 0 479 229 57 57 chrX 128064988 128065163 -48908977 + MIR SINE MIR 7 181 -81 275 100 0 0 chrX 128065168 128065208 -48908932 + AluJb SINE Alu 1 40 -262 252 0 0 0 chrX 128065227 128065255 -48908885 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1473 175 52 0 chrX 128065265 128065362 -48908778 + AluJb SINE Alu 26 117 -195 213 39 0 0 chrX 128065362 128065388 -48908752 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1473 175 52 0 chrX 128065388 128065541 -48908599 + AluJb SINE Alu 117 289 -23 1832 143 58 134 chrX 128066580 128066644 -48907496 - MSTA LTR MaLR 0 428 361 1865 128 7 40 chrX 128066644 128066940 -48907200 + AluJb SINE Alu 3 288 -24 1832 143 58 134 chrX 128066940 128066970 -48907170 - MSTA LTR MaLR -67 361 330 2247 113 7 0 chrX 128066970 128067279 -48906861 + AluSq SINE Alu 1 311 -2 1832 143 58 134 chrX 128067279 128067301 -48906839 - MSTA LTR MaLR -98 330 308 2200 93 26 29 chrX 128067301 128067612 -48906528 + AluSg SINE Alu 1 310 0 1832 143 58 134 chrX 128067612 128067956 -48906184 - MSTA LTR MaLR -120 308 1 244 260 110 94 chrX 128068221 128068348 -48905792 + L2 LINE L2 3134 3262 -10 185 0 40 0 chrX 128069576 128069601 -48904539 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 462 248 110 14 chrX 128069794 128069939 -48904201 - MIR SINE MIR -12 250 92 183 311 78 22 chrX 128070011 128070101 -48904039 + L2 LINE L2 2570 2664 -650 249 296 0 45 chrX 128070118 128070206 -48903934 + L2 LINE L2 3007 3090 -182 588 250 8 0 chrX 128070245 128070377 -48903763 - MIR SINE MIR 0 262 130 2475 70 0 7 chrX 128070529 128070830 -48903310 + AluSc SINE Alu 1 299 -10 272 336 23 31 chrX 128070994 128071053 -48903087 - MIR SINE MIR -116 146 88 977 130 65 113 chrX 128071053 128071283 -48902857 - MER20 DNA MER1_type 0 219 1 272 336 23 31 chrX 128071283 128071351 -48902789 - MIR SINE MIR -174 88 20 3665 167 45 38 chrX 128072164 128073574 -48900566 + L1MA9 LINE L1 4797 6217 -95 221 57 29 0 chrX 128073574 128073609 -48900531 + (TA)n Simple_repeat Simple_repeat 2 37 0 3665 167 45 38 chrX 128073609 128073626 -48900514 + L1MA9 LINE L1 6217 6232 -80 1919 154 7 3 chrX 128073687 128073985 -48900155 + AluJo SINE Alu 1 299 -13 363 267 120 93 chrX 128073992 128074346 -48899794 - L1ME4a LINE L1 -116 6005 5694 234 163 0 23 chrX 128074739 128074782 -48899358 - MIR SINE MIR -6 256 215 597 319 25 25 chrX 128075333 128075571 -48898569 - L3 LINE CR1 -1 1576 1339 272 298 229 27 chrX 128075618 128075806 -48898334 - L3 LINE CR1 -454 1123 898 1165 345 63 11 chrX 128075890 128076363 -48897777 - L3 LINE CR1 -849 728 231 657 162 0 0 chrX 128076391 128076490 -48897650 - AluSc SINE Alu -18 291 193 207 162 0 0 chrX 128078312 128078349 -48895791 + (TG)n Simple_repeat Simple_repeat 2 38 0 583 255 55 0 chrX 128078429 128078574 -48895566 + MIR SINE MIR 41 193 -69 234 0 0 0 chrX 128078663 128078689 -48895451 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 439 288 0 34 chrX 128079849 128079967 -48894173 + MIR SINE MIR 6 119 -143 1122 163 98 0 chrX 128080453 128080698 -48893442 + L1MD3 LINE L1 7727 7995 0 829 281 104 8 chrX 128080819 128081193 -48892947 - L1ME4a LINE L1 -210 5911 5502 1976 155 10 16 chrX 128081277 128081586 -48892554 - AluJo SINE Alu -4 308 2 1731 155 0 63 chrX 128081608 128081925 -48892215 - AluJo SINE Alu -15 297 1 21 36 0 0 chrX 128083335 128083363 -48890777 + AT_rich Low_complexity Low_complexity 1 28 0 680 283 31 14 chrX 128084315 128084538 -48889602 - MIR SINE MIR -16 246 20 1748 194 0 0 chrX 128084557 128084868 -48889272 - AluJo SINE Alu 0 311 1 358 253 172 20 chrX 128085004 128085300 -48888840 - L1ME4a LINE L1 -21 6100 5760 2116 108 27 7 chrX 128085300 128085596 -48888544 - AluSx SINE Alu -10 302 1 2321 101 0 3 chrX 128085990 128086297 -48887843 + AluSq SINE Alu 1 306 -7 439 161 20 0 chrX 128086326 128086424 -48887716 + L1ME4a LINE L1 5759 5860 -261 333 0 0 0 chrX 128086483 128086520 -48887620 + (TA)n Simple_repeat Simple_repeat 1 37 0 386 250 202 36 chrX 128086750 128086918 -48887222 - MIR SINE MIR -42 220 25 351 206 149 9 chrX 128087110 128087217 -48886923 + MIR SINE MIR 141 262 0 362 311 156 36 chrX 128087962 128088322 -48885818 + L2 LINE L2 1776 2178 -1136 1389 60 0 0 chrX 128088391 128088557 -48885583 - AluSg/x SINE Alu -10 300 135 305 294 76 0 chrX 128088603 128088722 -48885418 - MIR SINE MIR -30 232 105 250 235 0 0 chrX 128090161 128090212 -48883928 + L2 LINE L2 3256 3306 -7 367 269 117 14 chrX 128090897 128091042 -48883098 - MIR3 SINE MIR -7 201 42 562 218 173 28 chrX 128092101 128092280 -48881860 + L3 LINE CR1 410 614 -963 221 282 204 19 chrX 128093417 128093520 -48880620 + MIR SINE MIR 40 161 -101 2881 169 41 33 chrX 128093861 128094566 -48879574 + Tigger7 DNA MER2_type 1 2586 -1 296 228 13 0 chrX 128094630 128094709 -48879431 + L1MC/D LINE L1 1035 1114 -5429 2468 93 0 0 chrX 128094712 128095024 -48879116 + AluSx SINE Alu 1 312 0 1539 207 86 51 chrX 128095039 128095565 -48878575 + L1MC/D LINE L1 1750 2333 -4207 1901 121 38 17 chrX 128095565 128095855 -48878285 + AluSx SINE Alu 3 298 -14 1539 207 86 51 chrX 128095855 128096219 -48877921 + L1MC/D LINE L1 2333 2682 -3858 1907 174 0 6 chrX 128096243 128096604 -48877536 + L1MA6 LINE L1 5937 6295 -5 23 0 0 0 chrX 128096628 128096651 -48877489 + AT_rich Low_complexity Low_complexity 1 23 0 6372 214 32 30 chrX 128096672 128096718 -48877422 + L1M4 LINE L1 49 93 -6553 2117 106 0 23 chrX 128096718 128097019 -48877121 - AluY SINE Alu -16 295 2 6372 214 32 30 chrX 128097019 128098819 -48875321 + L1M4 LINE L1 93 1994 -4652 1001 138 18 0 chrX 128098819 128098986 -48875154 + L1MB5 LINE L1 5993 6162 -12 6372 214 32 30 chrX 128098986 128099365 -48874775 + L1M4 LINE L1 1994 2371 -4275 2233 115 0 0 chrX 128099366 128099661 -48874479 + AluSx SINE Alu 1 295 -17 1278 114 6 0 chrX 128099661 128099837 -48874303 + AluSp SINE Alu 134 310 -3 2376 213 34 77 chrX 128099841 128100010 -48874130 + L1M4 LINE L1 2362 2537 -4107 2211 121 0 10 chrX 128100010 128100323 -48873817 - AluSx SINE Alu -2 310 1 2376 213 34 77 chrX 128100323 128100468 -48873672 + L1M4 LINE L1 2537 2687 -3957 1871 158 16 24 chrX 128100468 128100848 -48873292 + L1MA7 LINE L1 5912 6288 -3 2376 213 34 77 chrX 128100848 128101559 -48872581 + L1M4 LINE L1 2687 3365 -3279 868 218 17 4 chrX 128101534 128101768 -48872372 + L1MC/D LINE L1 2641 2877 -3663 * 1907 218 58 53 chrX 128101770 128102262 -48871878 + L1MC/D LINE L1 4928 5427 -1113 2398 100 3 0 chrX 128102262 128102572 -48871568 + AluSq SINE Alu 1 311 -2 1907 218 58 53 chrX 128102572 128102821 -48871319 + L1MC/D LINE L1 5427 5673 -867 1302 237 94 27 chrX 128102828 128103304 -48870836 + L1MD2 LINE L1 5850 6357 -2 1915 112 4 0 chrX 128103314 128103564 -48870576 + AluSp SINE Alu 1 251 -62 270 0 0 0 chrX 128103569 128103599 -48870541 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 770 162 14 0 chrX 128103599 128103747 -48870393 + L1MC/D LINE L1 5677 5826 -927 513 280 39 68 chrX 128103747 128103866 -48870274 - MIR SINE MIR -61 201 89 2171 129 10 0 chrX 128103866 128104175 -48869965 + AluSx SINE Alu 1 312 0 513 280 39 68 chrX 128104175 128104262 -48869878 - MIR SINE MIR -173 89 1 343 305 30 23 chrX 128105332 128105463 -48868677 - L2 LINE L2 -4 3268 3137 264 206 0 0 chrX 128105735 128105798 -48868342 + (TG)n Simple_repeat Simple_repeat 2 64 0 403 184 129 7 chrX 128105872 128106019 -48868121 - L1ME4a LINE L1 -235 5886 5722 396 251 86 25 chrX 128107743 128107906 -48866234 - MIR3 SINE MIR -18 190 18 229 349 28 0 chrX 128107906 128108012 -48866128 + L3 LINE CR1 1462 1570 -7 1828 186 76 68 chrX 128108733 128109248 -48864892 + LTR40a LTR ERVL 1 519 0 795 106 8 0 chrX 128111240 128111363 -48862777 + L1MA9 LINE L1 6185 6308 -4 2482 50 13 7 chrX 128111514 128111812 -48862328 + AluY SINE Alu 1 300 -11 385 307 0 0 chrX 128111896 128111999 -48862141 + MIR SINE MIR 16 117 -104 561 258 123 18 chrX 128112289 128112452 -48861688 + MIR SINE MIR 73 252 -10 495 73 0 0 chrX 128112456 128112524 -48861616 + (CAT)n Simple_repeat Simple_repeat 2 69 0 1537 138 56 69 chrX 128112921 128113225 -48860915 - AluJo SINE Alu -12 300 1 2630 92 21 5 chrX 128113520 128113900 -48860240 + MLT2A1 LTR ERVL 1 386 -58 2131 107 7 3 chrX 128113901 128114191 -48859949 + AluSx SINE Alu 2 292 -20 27 0 0 0 chrX 128114191 128114218 -48859922 + AT_rich Low_complexity Low_complexity 1 27 0 280 117 17 17 chrX 128114228 128114288 -48859852 + (TTATA)n Simple_repeat Simple_repeat 5 64 0 303 70 0 53 chrX 128114300 128114357 -48859783 + MLT2A1 LTR ERVL 391 444 0 189 107 0 0 chrX 128114585 128114613 -48859527 + (TTA)n Simple_repeat Simple_repeat 3 30 0 2373 213 11 24 chrX 128114652 128115048 -48859092 + MLT1F LTR MaLR 1 390 -152 2479 164 29 5 chrX 128115048 128115464 -48858676 + MSTB LTR MaLR 1 426 0 2373 213 11 24 chrX 128115464 128115616 -48858524 + MLT1F LTR MaLR 390 542 0 1525 161 79 0 chrX 128115993 128116298 -48857842 + L1MA9 LINE L1 5982 6310 -2 369 274 264 16 chrX 128120687 128120950 -48853190 + L3b LINE CR1 1104 1453 -130 1493 39 0 0 chrX 128120950 128121128 -48853012 - AluY SINE Alu -2 309 132 369 274 264 16 chrX 128121128 128121167 -48852973 + L3b LINE CR1 1453 1481 -102 218 65 0 65 chrX 128122033 128122079 -48852061 + (T)n Simple_repeat Simple_repeat 1 43 0 1979 103 3 43 chrX 128122685 128122985 -48851155 + AluY SINE Alu 11 298 -13 205 344 80 61 chrX 128123749 128123961 -48850179 + L3b LINE CR1 1362 1577 -6 216 0 0 0 chrX 128124851 128124875 -48849265 + (A)n Simple_repeat Simple_repeat 1 24 0 535 295 94 7 chrX 128124942 128125091 -48849049 + MIR SINE MIR 20 181 -81 329 353 108 0 chrX 128125443 128125582 -48848558 - L2 LINE L2 -2 3270 3117 382 262 24 18 chrX 128125701 128125832 -48848308 + MIR SINE MIR 9 142 -66 316 284 46 28 chrX 128126247 128126356 -48847784 - L2 LINE L2 -4 3309 3199 520 255 65 0 chrX 128126533 128126686 -48847454 + L1ME4a LINE L1 5384 5546 -575 747 240 59 19 chrX 128126710 128126981 -48847159 + L1ME4a LINE L1 5770 6051 -70 1766 196 3 13 chrX 128127020 128127331 -48846809 - AluJb SINE Alu -4 308 1 3781 199 25 30 chrX 128127358 128128268 -48845872 - L1MA9 LINE L1 -38 6274 5369 23 33 0 0 chrX 128128268 128128298 -48845842 + AT_rich Low_complexity Low_complexity 1 30 0 257 264 155 8 chrX 128128471 128128600 -48845540 + L1ME4a LINE L1 5961 6108 -13 408 362 22 0 chrX 128129370 128129508 -48844632 + MIR3 SINE MIR 33 173 -35 296 313 14 5 chrX 128130103 128130217 -48843923 - MER91C DNA MER1_type -1 189 80 2674 46 0 0 chrX 128130665 128130972 -48843168 + AluY SINE Alu 1 307 -4 1792 171 88 5 chrX 128131636 128132022 -48842118 - MSTB1 LTR MaLR 0 432 15 258 192 51 77 chrX 128132099 128132177 -48841963 - MIR SINE MIR -74 188 113 691 308 36 8 chrX 128132343 128132596 -48841544 - MIR SINE MIR -2 260 1 1933 156 25 0 chrX 128132685 128132968 -48841172 + AluJb SINE Alu 1 290 -22 2295 136 80 5 chrX 128133439 128133837 -48840303 + MSTA LTR MaLR 1 428 0 338 52 0 2 chrX 128134246 128134264 -48839876 + AluSg SINE Alu 1 18 -303 2148 89 0 38 chrX 128134264 128134557 -48839583 + AluSg SINE Alu 1 282 -28 338 52 0 2 chrX 128134557 128134585 -48839555 + AluSg SINE Alu 18 321 0 405 178 222 0 chrX 128134647 128134737 -48839403 + MER91C DNA MER1_type 26 135 -5 198 0 0 0 chrX 128135468 128135490 -48838650 + (CA)n Simple_repeat Simple_repeat 2 23 0 2830 7 0 0 chrX 128135514 128135820 -48838320 - AluYb8 SINE Alu -12 306 1 2410 92 0 0 chrX 128138781 128139076 -48835064 + AluSx SINE Alu 1 295 -17 4760 112 60 9 chrX 128139445 128140231 -48833909 + LTR1B LTR ERV1 1 826 0 246 306 186 8 chrX 128140295 128140419 -48833721 - L2 LINE L2 0 3272 3127 2357 70 0 26 chrX 128141531 128141844 -48832296 + AluY SINE Alu 1 305 -6 319 308 199 55 chrX 128142523 128143308 -48830832 + L2 LINE L2 1711 2608 -706 246 298 0 0 chrX 128143325 128143382 -48830758 + L2 LINE L2 3204 3260 -12 1040 144 0 13 chrX 128143820 128143973 -48830167 - FRAM SINE Alu -25 151 1 207 330 0 45 chrX 128146347 128146435 -48827705 + L3b LINE CR1 1286 1369 -214 280 333 52 30 chrX 128147526 128147661 -48826479 + L2 LINE L2 3170 3307 -6 257 273 30 15 chrX 128149245 128149311 -48824829 + MIR SINE MIR 84 150 -112 844 260 94 52 chrX 128149325 128149899 -48824241 + L1ME4a LINE L1 5523 6120 -1 2331 95 3 0 chrX 128150011 128150305 -48823835 + AluSq SINE Alu 1 295 -18 2269 111 0 3 chrX 128151388 128151685 -48822455 + AluSx SINE Alu 1 296 -16 21 0 0 0 chrX 128152729 128152750 -48821390 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chrX 128154401 128154425 -48819715 + (TG)n Simple_repeat Simple_repeat 1 24 0 205 327 0 0 chrX 128154563 128154615 -48819525 + MIR SINE MIR 50 101 -161 501 255 98 22 chrX 128156314 128156498 -48817642 - MIR SINE MIR -2 260 63 196 333 0 0 chrX 128157882 128157960 -48816180 - MIR SINE MIR -7 255 178 344 177 152 0 chrX 128157978 128158057 -48816083 - MIR SINE MIR -63 199 109 896 123 0 36 chrX 128158092 128158230 -48815910 + FLAM_C SINE Alu 1 133 0 4339 134 18 17 chrX 128158302 128158870 -48815270 - L1MA7 LINE L1 -11 6280 5603 1486 136 0 5 chrX 128158870 128159091 -48815049 - AluJb SINE Alu -11 301 82 4339 134 18 17 chrX 128159091 128159442 -48814698 - L1MA7 LINE L1 -688 5603 5254 782 83 92 0 chrX 128159445 128159565 -48814575 - MER85 DNA T2_type 0 139 9 903 211 5 0 chrX 128159575 128159779 -48814361 - L1MA7 LINE L1 -889 5257 5053 6076 55 4 0 chrX 128159791 128160587 -48813553 - L1PA7 LINE L1 0 6154 5356 182 275 0 0 chrX 128161530 128161570 -48812570 + L2 LINE L2 3220 3259 -13 618 92 0 15 chrX 128161694 128161934 -48812206 - AluY SINE Alu -5 306 1 485 305 85 4 chrX 128161969 128162241 -48811899 - L1ME4a LINE L1 -195 5926 5633 2253 138 12 60 chrX 128162241 128162301 -48811839 + L1MB7 LINE L1 5724 5785 -399 1703 181 0 31 chrX 128162301 128162441 -48811699 + AluJo SINE Alu 1 144 -168 2134 128 0 7 chrX 128162441 128162745 -48811395 + AluSq SINE Alu 1 302 -11 1703 181 0 31 chrX 128162745 128162924 -48811216 + AluJo SINE Alu 144 310 -2 2253 138 12 60 chrX 128162924 128163347 -48810793 + L1MB7 LINE L1 5785 6184 0 1601 192 10 29 chrX 128163352 128163479 -48810661 + AluJo SINE Alu 1 129 -183 234 0 0 0 chrX 128163479 128163505 -48810635 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1601 192 10 29 chrX 128163505 128163684 -48810456 + AluJo SINE Alu 129 301 -11 38 39 0 0 chrX 128163719 128163771 -48810369 + AT_rich Low_complexity Low_complexity 1 52 0 332 207 190 35 chrX 128163817 128163933 -48810207 + MIR SINE MIR 115 248 -14 2303 101 0 3 chrX 128164839 128165135 -48809005 + AluSq SINE Alu 1 295 -18 202 195 9 71 chrX 128165275 128165388 -48808752 + T-rich Low_complexity Low_complexity 1 106 0 1985 113 33 0 chrX 128165693 128166008 -48808132 - AluSx SINE Alu 0 324 1 2366 90 0 0 chrX 128166423 128166723 -48807417 + AluSx SINE Alu 1 300 -12 332 275 138 0 chrX 128166840 128166949 -48807191 - L2 LINE L2 -10 3262 3139 667 321 16 45 chrX 128167052 128167360 -48806780 - L3 LINE CR1 -132 1445 1147 180 125 0 0 chrX 128167603 128167635 -48806505 + (CA)n Simple_repeat Simple_repeat 1 32 0 187 271 167 49 chrX 128167868 128167945 -48806195 - MIR3 SINE MIR -26 182 115 2202 122 6 3 chrX 128167945 128168256 -48805884 + AluSx SINE Alu 1 312 0 187 271 167 49 chrX 128168256 128168322 -48805818 - MIR3 SINE MIR -93 115 22 335 295 125 0 chrX 128168561 128168673 -48805467 - MIR SINE MIR -9 253 128 2589 53 0 0 chrX 128168772 128169071 -48805069 - AluY SINE Alu -12 299 1 906 125 0 22 chrX 128169079 128169215 -48804925 - FLAM_C SINE Alu 0 133 1 230 273 73 0 chrX 128171419 128171474 -48802666 + L2 LINE L2 3147 3205 -67 22 35 0 0 chrX 128171642 128171671 -48802469 + AT_rich Low_complexity Low_complexity 1 29 0 2328 91 0 3 chrX 128171671 128171968 -48802172 - AluSx SINE Alu -16 296 1 21 0 0 0 chrX 128173280 128173301 -48800839 + AT_rich Low_complexity Low_complexity 1 21 0 2350 90 0 0 chrX 128173303 128173603 -48800537 - AluSc SINE Alu -8 301 2 230 245 0 0 chrX 128173787 128173836 -48800304 + MIR SINE MIR 76 124 -84 210 238 0 0 chrX 128173896 128173938 -48800202 + MIR3 SINE MIR 146 187 -21 381 275 145 19 chrX 128174273 128174325 -48799815 - L1ME4a LINE L1 -3 6118 6074 1991 147 0 0 chrX 128174325 128174611 -48799529 + AluSx SINE Alu 20 305 -7 381 275 145 19 chrX 128174611 128174827 -48799313 - L1ME4a LINE L1 -47 6074 5816 897 94 0 5 chrX 128174828 128175030 -48799110 + AluSx SINE Alu 1 296 -16 296 207 15 89 chrX 128175034 128175169 -48798971 - L1ME4a LINE L1 -352 5769 5671 2048 112 0 11 chrX 128175169 128175487 -48798653 + AluSq SINE Alu 1 315 0 21 36 0 0 chrX 128178237 128178265 -48795875 + AT_rich Low_complexity Low_complexity 1 28 0 180 175 75 0 chrX 128178548 128178588 -48795552 - L2 LINE L2 -7 3265 3223 2358 38 0 72 chrX 128178662 128178981 -48795159 + AluY SINE Alu 1 296 -15 206 146 0 55 chrX 128179060 128179115 -48795025 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 352 275 79 0 chrX 128179293 128179471 -48794669 - L1ME4a LINE L1 -46 6075 5884 705 230 62 55 chrX 128179489 128179746 -48794394 - L1ME4a LINE L1 -311 5810 5552 203 103 26 0 chrX 128179792 128179831 -48794309 + (TA)n Simple_repeat Simple_repeat 2 41 0 193 300 100 27 chrX 128180160 128180270 -48793870 - L2 LINE L2 0 3272 3155 1966 199 116 24 chrX 128180400 128180893 -48793247 - L3 LINE CR1 -364 1213 676 269 252 84 37 chrX 128180918 128181025 -48793115 + L2 LINE L2 3202 3313 0 666 259 74 11 chrX 128181516 128181705 -48792435 + MIR SINE MIR 12 212 -50 441 280 17 25 chrX 128181720 128181838 -48792302 - MIR SINE MIR -138 124 8 184 369 15 46 chrX 128181882 128182012 -48792128 - L3 LINE CR1 -2 1575 1450 2070 43 12 0 chrX 128182213 128182469 -48791671 + L1PA3 LINE L1 5894 6152 -3 225 0 0 0 chrX 128183961 128183986 -48790154 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 235 296 25 50 chrX 128184709 128184868 -48789272 + L2 LINE L2 2008 2162 -1152 278 337 0 0 chrX 128184875 128184973 -48789167 + MIR SINE MIR 164 261 -1 1559 186 19 32 chrX 128185110 128185421 -48788719 + AluJo SINE Alu 1 307 -5 225 0 0 0 chrX 128185970 128185995 -48788145 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 2244 99 0 0 chrX 128186597 128186909 -48787231 + AluSx SINE Alu 1 312 0 207 132 26 0 chrX 128186924 128186962 -48787178 + MIR3 SINE MIR 163 201 -7 198 58 0 77 chrX 128189990 128190042 -48784098 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 182 150 25 0 chrX 128190157 128190197 -48783943 + CT-rich Low_complexity Low_complexity 3 43 0 607 191 14 64 chrX 128190300 128190441 -48783699 + MER94 DNA DNA 1 134 0 220 257 100 0 chrX 128190455 128190525 -48783615 - MIR3 SINE MIR -14 194 118 319 57 0 75 chrX 128190584 128190626 -48783514 - AluY SINE Alu -1 307 268 1780 66 0 0 chrX 128190626 128190839 -48783301 - AluY SINE Alu -96 215 3 411 242 327 12 chrX 128192726 128192891 -48781249 - MIR SINE MIR -44 218 2 1013 215 5 0 chrX 128193479 128193665 -48780475 - MER5A DNA MER1_type 0 189 3 260 175 0 35 chrX 128193723 128193780 -48780360 + MIR SINE MIR 201 255 -7 2745 135 46 5 chrX 128193995 128194410 -48779730 - MSTB1 LTR MaLR 0 432 1 2341 59 0 0 chrX 128194517 128194790 -48779350 + AluY SINE Alu 1 273 -38 334 37 0 37 chrX 128194806 128194860 -48779280 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 286 234 39 0 chrX 128195499 128195576 -48778564 + MER116 DNA Mariner 1 80 0 706 255 72 43 chrX 128195661 128195896 -48778244 - MIR SINE MIR -1 261 20 21 36 0 0 chrX 128196599 128196627 -48777513 + AT_rich Low_complexity Low_complexity 1 28 0 233 271 198 51 chrX 128196877 128197054 -48777086 - L2 LINE L2 -925 2389 2187 376 273 8 33 chrX 128197079 128197200 -48776940 - MER5B DNA MER1_type -49 129 12 345 24 0 0 chrX 128197444 128197486 -48776654 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 128197538 128197563 -48776577 + AT_rich Low_complexity Low_complexity 1 25 0 2326 87 6 19 chrX 128198242 128198553 -48775587 + AluSq SINE Alu 3 309 -4 279 0 0 0 chrX 128199087 128199118 -48775022 + (TTG)n Simple_repeat Simple_repeat 2 32 0 212 310 7 120 chrX 128201751 128201893 -48772247 - L2 LINE L2 -215 3057 2932 198 291 177 0 chrX 128201891 128201970 -48772170 - L2 LINE L2 -34 3238 3146 * 1969 155 0 0 chrX 128202065 128202355 -48771785 - AluJb SINE Alu -22 290 1 962 201 11 17 chrX 128202355 128202527 -48771613 + MER45A DNA AcHobo 6 178 0 1979 154 3 10 chrX 128203606 128203917 -48770223 - AluSx SINE Alu -3 309 1 300 354 61 39 chrX 128204126 128204307 -48769833 - L2 LINE L2 -31 3241 3057 2580 48 3 3 chrX 128205221 128205531 -48768609 + AluY SINE Alu 2 311 0 348 336 42 0 chrX 128206408 128206527 -48767613 - L2 LINE L2 -12 3260 3137 472 275 16 81 chrX 128209106 128209317 -48764823 - L2 LINE L2 -5 3308 3114 1668 177 14 0 chrX 128209317 128209594 -48764546 + AluSx SINE Alu 32 312 0 472 275 16 81 chrX 128209594 128209629 -48764511 - L2 LINE L2 -199 3114 3078 347 105 18 0 chrX 128209629 128209686 -48764454 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 343 364 0 8 chrX 128209798 128209916 -48764224 - MIR3 SINE MIR -79 129 13 199 246 36 100 chrX 128209939 128210049 -48764091 - L2 LINE L2 -12 3301 3199 234 240 0 0 chrX 128211252 128211302 -48762838 + CT-rich Low_complexity Low_complexity 1 50 0 308 151 0 0 chrX 128212565 128212618 -48761522 + MIR SINE MIR 81 133 -75 459 113 0 66 chrX 128212688 128212794 -48761346 + (GGA)n Simple_repeat Simple_repeat 2 100 0 442 84 42 11 chrX 128213327 128213422 -48760718 + (TA)n Simple_repeat Simple_repeat 2 99 0 215 173 27 6 chrX 128213449 128213495 -48760645 + L2 LINE L2 3191 3279 -34 373 304 43 0 chrX 128213654 128213769 -48760371 - MIR3 SINE MIR -43 165 46 288 77 0 0 chrX 128213784 128213823 -48760317 + (CAGAA)n Simple_repeat Simple_repeat 2 40 0 2625 134 21 10 chrX 128214579 128215012 -48759128 - MER61C LTR ERV1 0 434 13 2248 105 3 10 chrX 128215041 128215354 -48758786 - AluSq SINE Alu -2 311 1 204 146 0 125 chrX 128215846 128215894 -48758246 + L2 LINE L2 3262 3303 -10 231 273 0 0 chrX 128215924 128215990 -48758150 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 545 206 51 74 chrX 128215990 128216165 -48757975 - MIR SINE MIR -70 192 22 1368 145 4 29 chrX 128216519 128216760 -48757380 + L1MB7 LINE L1 5931 6165 -19 235 352 56 37 chrX 128219571 128219679 -48754461 + L2 LINE L2 3143 3252 -20 1180 225 19 19 chrX 128221862 128222124 -48752016 - MIR SINE MIR 0 262 1 186 250 65 43 chrX 128222267 128222285 -48751855 - L2 LINE L2 -1262 2052 2033 269 329 14 48 chrX 128222285 128222431 -48751709 + MIR SINE MIR 1 141 -121 201 313 16 16 chrX 128223523 128223587 -48750553 + MIR3 SINE MIR 10 73 -135 600 321 0 6 chrX 128223626 128223794 -48750346 - MER5A DNA MER1_type -5 184 18 2109 95 0 4 chrX 128224322 128224595 -48749545 + AluSg SINE Alu 37 308 -2 22 35 0 0 chrX 128225586 128225615 -48748525 + AT_rich Low_complexity Low_complexity 1 29 0 242 174 91 53 chrX 128226213 128226345 -48747795 + L1ME4a LINE L1 5941 6077 -44 922 249 39 23 chrX 128226601 128226858 -48747282 + MIR SINE MIR 2 262 0 257 300 200 0 chrX 128227528 128227628 -48746512 - MIR3 SINE MIR -4 204 85 22 0 0 0 chrX 128228188 128228210 -48745930 + AT_rich Low_complexity Low_complexity 1 22 0 1438 106 34 0 chrX 128228210 128228417 -48745723 + AluSq SINE Alu 98 311 -2 571 284 65 12 chrX 128228554 128228723 -48745417 + MIR SINE MIR 53 230 -32 1804 139 10 7 chrX 128231180 128231468 -48742672 - AluJb SINE Alu -19 293 5 2856 185 15 22 chrX 128231896 128232442 -48741698 - L1MA10 LINE L1 -10 6324 5783 215 225 0 0 chrX 128232442 128232482 -48741658 + (TG)n Simple_repeat Simple_repeat 2 41 0 2304 109 0 3 chrX 128232496 128232808 -48741332 - AluSx SINE Alu -1 311 1 725 132 11 9 chrX 128232811 128232952 -48741188 - L1MA10 LINE L1 -521 5779 5634 993 284 28 0 chrX 128234361 128234615 -48739525 + MIR SINE MIR 2 262 0 247 217 145 60 chrX 128234715 128234798 -48739342 + MIR SINE MIR 64 153 -109 4521 106 30 3 chrX 128237039 128237711 -48736429 - L1PA16 LINE L1 -1 6165 5476 1422 131 18 10 chrX 128238747 128239179 -48734961 - L1PA16 LINE L1 -671 5495 5061 198 71 0 0 chrX 128239852 128239880 -48734260 + (TCTA)n Simple_repeat Simple_repeat 3 30 0 5340 183 27 22 chrX 128240494 128242376 -48731764 - L1MC2 LINE L1 -2 6342 4456 1360 209 6 42 chrX 128242373 128242732 -48731408 - L1MC2 LINE L1 -1962 4184 3839 * 5420 100 9 1 chrX 128242748 128243549 -48730591 - L1PA10 LINE L1 -2 6166 5360 681 250 10 65 chrX 128244024 128244224 -48729916 + L3 LINE CR1 995 1183 -394 362 292 36 21 chrX 128245224 128245369 -48728771 + MIR SINE MIR 56 200 -56 227 361 0 0 chrX 128245463 128245535 -48728605 + L2 LINE L2 3201 3272 0 255 31 0 0 chrX 128245718 128245750 -48728390 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 562 267 184 9 chrX 128248128 128248345 -48725795 + MIR SINE MIR 8 262 0 430 207 38 78 chrX 128248394 128248531 -48725609 - MIR SINE MIR -62 146 43 820 169 35 0 chrX 128249122 128249294 -48724846 - L1MA4 LINE L1 -5 6295 6118 1330 158 158 11 chrX 128249297 128249415 -48724725 + AluJo SINE Alu 1 100 -212 180 0 0 0 chrX 128249415 128249435 -48724705 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 1330 158 158 11 chrX 128249435 128249588 -48724552 + AluJo SINE Alu 100 312 0 228 286 0 0 chrX 128249604 128249674 -48724466 - L1MA3 LINE L1 -177 6128 6059 185 167 0 48 chrX 128249676 128249718 -48724422 - MIR SINE MIR -177 85 46 219 222 0 0 chrX 128250135 128250180 -48723960 - L2 LINE L2 -5 3308 3264 2052 124 3 0 chrX 128250339 128250673 -48723467 - AluSx SINE Alu 0 335 1 421 290 46 15 chrX 128250762 128250893 -48723247 - L2 LINE L2 -5 3267 3133 488 313 78 22 chrX 128250931 128251110 -48723030 - MIR3 SINE MIR -17 191 3 380 241 32 76 chrX 128252061 128252173 -48721967 - MER5A DNA MER1_type -5 184 78 2040 109 0 11 chrX 128252173 128252485 -48721655 - AluSx SINE Alu 0 313 5 380 241 32 76 chrX 128252485 128252529 -48721611 - MER5A DNA MER1_type -111 78 34 400 258 10 0 chrX 128252541 128252638 -48721502 - MIR3 SINE MIR -52 156 59 236 243 43 14 chrX 128253664 128253734 -48720406 - L2 LINE L2 -4 3268 3197 402 278 0 11 chrX 128253779 128253869 -48720271 - MIR SINE MIR -172 90 2 22 0 0 0 chrX 128253932 128253954 -48720186 + AT_rich Low_complexity Low_complexity 1 22 0 2238 214 9 13 chrX 128255209 128255671 -48718469 - LTR40b LTR ERVL -2 460 1 7239 47 3 0 chrX 128256296 128257666 -48716474 - L1PA7 LINE L1 -3 6151 4777 269 85 0 43 chrX 128257666 128257713 -48716427 + L1PA7 LINE L1 4721 4765 -1381 500 267 37 0 chrX 128259683 128259818 -48714322 - MIR SINE MIR -13 249 110 719 247 0 0 chrX 128260181 128260339 -48713801 - MLT1B LTR MaLR -46 344 187 200 205 0 0 chrX 128260349 128260388 -48713752 + GA-rich Low_complexity Low_complexity 1 39 0 229 183 0 50 chrX 128260394 128260454 -48713686 - MLT1B LTR MaLR -202 172 116 243 0 0 0 chrX 128260573 128260600 -48713540 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 27 81 0 0 chrX 128260633 128260695 -48713445 + AT_rich Low_complexity Low_complexity 1 62 0 341 348 37 24 chrX 128261521 128261553 -48712587 + MIR SINE MIR 20 50 -212 1610 166 33 29 chrX 128261553 128261738 -48712402 - AluJb SINE Alu -4 308 120 238 24 0 49 chrX 128261738 128261779 -48712361 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1610 166 33 29 chrX 128261779 128261900 -48712240 - AluJb SINE Alu -192 120 1 341 348 37 24 chrX 128261900 128262031 -48712109 + MIR SINE MIR 50 185 -77 832 128 9 123 chrX 128262247 128262458 -48711682 - Tigger7 DNA MER2_type 0 2487 2301 1851 142 14 14 chrX 128263200 128263495 -48710645 + AluJo SINE Alu 1 295 -17 3085 147 25 2 chrX 128263925 128264455 -48709685 - L1MC1 LINE L1 -6 6327 5786 7712 194 36 38 chrX 128264540 128265487 -48708653 - L1MB7 LINE L1 0 6184 5237 2137 138 0 0 chrX 128265487 128265783 -48708357 - AluJo SINE Alu -16 296 1 7712 194 36 38 chrX 128265783 128266721 -48707419 - L1MB7 LINE L1 -947 5237 4299 183 42 0 0 chrX 128266721 128266745 -48707395 + (GA)n Simple_repeat Simple_repeat 1 24 0 7712 194 36 38 chrX 128266745 128268004 -48706136 - L1MB7 LINE L1 -1885 4299 3056 2140 136 3 19 chrX 128268013 128268373 -48705767 - L1PB3 LINE L1 -2 6152 5799 1439 144 35 0 chrX 128268374 128268603 -48705537 + AluJb SINE Alu 70 306 -6 395 292 79 34 chrX 128270468 128270646 -48703494 - MIR3 SINE MIR -6 202 17 343 353 118 23 chrX 128271828 128272174 -48701966 - L2 LINE L2 -8 3264 2886 280 73 12 85 chrX 128273051 128273133 -48701007 + (TTCTCC)n Simple_repeat Simple_repeat 4 79 0 291 304 13 0 chrX 128273732 128273811 -48700329 - MIR3 SINE MIR -27 181 102 2278 97 0 13 chrX 128273901 128274200 -48699940 - AluSq SINE Alu -18 295 1 639 267 6 63 chrX 128274281 128274520 -48699620 - MIR SINE MIR -15 247 25 248 68 0 23 chrX 128274692 128274736 -48699404 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 850 113 0 57 chrX 128276082 128276223 -48697917 - FLAM_C SINE Alu 0 133 1 438 291 97 8 chrX 128276738 128276872 -48697268 - MIR3 SINE MIR -5 203 58 445 263 111 51 chrX 128277251 128277468 -48696672 + MIR SINE MIR 29 258 -4 2647 142 22 5 chrX 128277580 128277997 -48696143 - MSTB LTR MaLR -2 424 1 317 291 34 0 chrX 128278132 128278249 -48695891 + MIR3 SINE MIR 88 208 0 1071 223 63 6 chrX 128279371 128279703 -48694437 - L1M4 LINE L1 -847 5797 5447 2166 196 81 29 chrX 128279725 128280418 -48693722 - L1M4 LINE L1 -2392 4252 3524 5733 89 45 6 chrX 128280421 128280823 -48693317 - L1PB2 LINE L1 -2 6149 5764 2348 104 48 25 chrX 128280823 128281179 -48692961 - THE1B LTR MaLR 0 364 1 5733 89 45 6 chrX 128281179 128281762 -48692378 - L1PB2 LINE L1 -387 5764 5128 993 17 0 0 chrX 128281822 128281938 -48692202 - L1PA2 LINE L1 0 6155 6040 562 28 0 0 chrX 128281938 128282010 -48692130 + L1P LINE L1 5323 5394 -761 * 3020 214 42 29 chrX 128282007 128283312 -48690828 - L1M4 LINE L1 -3131 3513 2193 803 168 0 0 chrX 128283350 128283481 -48690659 - AluJb SINE Alu -3 309 179 553 303 0 0 chrX 128283516 128283691 -48690449 - L1M4 LINE L1 -4640 2006 1832 1743 190 68 34 chrX 128283691 128284133 -48690007 - LTR2B LTR ERV1 0 490 34 5322 220 26 24 chrX 128284156 128284202 -48689938 - L1M4 LINE L1 -4813 1833 1789 2106 139 0 10 chrX 128284202 128284512 -48689628 + AluSx SINE Alu 1 307 -5 5322 220 26 24 chrX 128284512 128285966 -48688174 - L1M4 LINE L1 -4857 1789 308 2033 164 35 34 chrX 128285969 128286513 -48687627 - MLT2A2 LTR ERVL -7 547 1 1212 180 11 40 chrX 128286513 128286785 -48687355 - L1M4 LINE L1 -6233 309 46 217 240 40 0 chrX 128286785 128286835 -48687305 + MIR SINE MIR 208 259 -3 41 36 0 0 chrX 128286845 128286900 -48687240 + AT_rich Low_complexity Low_complexity 1 55 0 10619 189 56 23 chrX 128286936 128288553 -48685587 - Charlie1 DNA MER1_type -19 2742 1005 2288 98 3 16 chrX 128288553 128288860 -48685280 - AluSq SINE Alu -4 309 7 10619 189 56 23 chrX 128288860 128289860 -48684280 - Charlie1 DNA MER1_type -1756 1005 39 212 304 0 0 chrX 128289868 128289924 -48684216 - L2 LINE L2 -641 2673 2618 938 171 74 0 chrX 128289939 128290114 -48684026 - MER5A DNA MER1_type 0 189 2 336 250 272 0 chrX 128290135 128290227 -48683913 + MER5A DNA MER1_type 73 189 0 291 328 89 42 chrX 128290227 128290480 -48683660 - L2 LINE L2 -702 2612 2348 526 358 0 20 chrX 128291036 128291237 -48682903 - MIR SINE MIR -65 197 1 310 284 82 22 chrX 128292287 128292519 -48681621 + L1ME2 LINE L1 4706 4951 -1195 556 176 10 0 chrX 128292827 128292929 -48681211 - L1PA16 LINE L1 -9 6157 6055 360 272 72 25 chrX 128292943 128293222 -48680918 + L1ME2 LINE L1 4958 5249 -897 299 188 229 18 chrX 128293249 128293419 -48680721 + L1ME2 LINE L1 5704 5909 -255 257 247 82 0 chrX 128293531 128293628 -48680512 + L1ME2 LINE L1 6036 6140 -24 21 36 0 0 chrX 128293739 128293767 -48680373 + AT_rich Low_complexity Low_complexity 1 28 0 5946 121 0 11 chrX 128294098 128295372 -48678768 - L1PA16 LINE L1 -13 6153 4887 559 231 0 118 chrX 128295847 128295995 -48678145 + MIR SINE MIR 20 142 -120 1486 171 36 4 chrX 128295995 128296271 -48677869 + AluJb SINE Alu 24 307 0 559 231 0 118 chrX 128296271 128296316 -48677824 + MIR SINE MIR 142 191 -71 1034 234 65 54 chrX 128296634 128297140 -48677000 + MER39 LTR ERV1 5 648 0 1583 83 65 0 chrX 128297377 128297593 -48676547 - MER30 DNA MER1_type 0 230 1 2514 74 0 0 chrX 128297704 128298003 -48676137 + AluY SINE Alu 1 299 -12 421 261 46 23 chrX 128300036 128300166 -48673974 + MIR SINE MIR 24 156 -106 254 180 16 0 chrX 128300419 128300480 -48673660 + GA-rich Low_complexity Low_complexity 4 65 0 1844 151 4 0 chrX 128300566 128300859 -48673281 - AluJb SINE Alu 0 304 11 447 165 21 41 chrX 128302245 128302342 -48671798 - AluSp/q SINE Alu -31 282 188 489 285 70 23 chrX 128303902 128304074 -48670066 - L2 LINE L2 -160 3112 2933 518 230 74 7 chrX 128305603 128305751 -48668389 + L1ME4a LINE L1 5964 6121 0 997 151 0 6 chrX 128306023 128306195 -48667945 - L1MB8 LINE L1 -5 6173 6003 1551 121 76 28 chrX 128306195 128306476 -48667664 + THE1C LTR MaLR 78 375 0 884 201 78 71 chrX 128307307 128307698 -48666442 - MSTB2 LTR MaLR 0 457 3 216 122 0 0 chrX 128308221 128308262 -48665878 + (TC)n Simple_repeat Simple_repeat 2 42 0 405 0 0 0 chrX 128308262 128308307 -48665833 + (CA)n Simple_repeat Simple_repeat 1 45 0 2035 121 24 0 chrX 128309219 128309509 -48664631 + AluSx SINE Alu 1 297 -15 457 270 48 8 chrX 128309710 128309836 -48664304 - MIR SINE MIR -6 256 126 2104 125 0 0 chrX 128309921 128310247 -48663893 - AluSx SINE Alu 0 326 1 465 187 178 9 chrX 128310331 128310438 -48663702 - L2 LINE L2 0 3313 3189 538 264 88 7 chrX 128310600 128310748 -48663392 + MIR3 SINE MIR 42 201 -7 361 244 76 30 chrX 128310769 128310900 -48663240 - L2 LINE L2 0 3313 3177 526 278 111 17 chrX 128310932 128311166 -48662974 + MIR SINE MIR 1 256 -6 306 182 0 0 chrX 128312305 128312371 -48661769 + GA-rich Low_complexity Low_complexity 3 68 0 2122 94 0 105 chrX 128313738 128314080 -48660060 + AluSg SINE Alu 1 306 -4 2195 61 0 58 chrX 128314223 128314518 -48659622 + AluY SINE Alu 2 279 -32 213 65 0 0 chrX 128314526 128314557 -48659583 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 353 123 15 0 chrX 128314629 128314694 -48659446 + (TG)n Simple_repeat Simple_repeat 1 66 0 1357 182 54 4 chrX 128314694 128315068 -48659072 - L1MB5 LINE L1 -9 6165 5755 809 174 8 0 chrX 128315572 128315704 -48658436 + FLAM_A SINE Alu 1 133 0 22 0 0 0 chrX 128315873 128315895 -48658245 + AT_rich Low_complexity Low_complexity 1 22 0 745 127 0 0 chrX 128316359 128316477 -48657663 - L1PB3 LINE L1 -2 6152 6035 180 0 0 0 chrX 128316723 128316743 -48657397 + (TTG)n Simple_repeat Simple_repeat 2 21 0 231 305 8 31 chrX 128318171 128318299 -48655841 - MARNA DNA Mariner -52 534 410 405 249 87 75 chrX 128318437 128318478 -48655662 + MIR SINE MIR 10 49 -213 2423 93 0 0 chrX 128318478 128318779 -48655361 - AluSx SINE Alu -11 301 1 405 249 87 75 chrX 128318779 128318910 -48655230 + MIR SINE MIR 49 184 -78 384 292 21 55 chrX 128319033 128319236 -48654904 - MARNA DNA Mariner -231 355 160 741 192 0 0 chrX 128319236 128319361 -48654779 - FLAM_A SINE Alu -8 125 1 384 292 21 55 chrX 128319361 128319393 -48654747 - MARNA DNA Mariner -426 160 128 603 270 129 9 chrX 128320103 128320336 -48653804 + MIR SINE MIR 2 262 0 1921 151 0 3 chrX 128321508 128321817 -48652323 + AluJb SINE Alu 1 308 0 228 291 101 0 chrX 128321830 128321909 -48652231 + L2 LINE L2 3178 3264 -8 260 325 73 24 chrX 128321982 128322105 -48652035 + MIR SINE MIR 84 212 -50 579 191 19 0 chrX 128322850 128322955 -48651185 - MER81 DNA DNA -4 110 4 474 242 206 14 chrX 128323216 128323435 -48650705 - MIR SINE MIR 0 262 2 526 323 38 13 chrX 128323901 128324059 -48650081 + MIR3 SINE MIR 44 205 -3 242 271 59 12 chrX 128325896 128325981 -48648159 - L2 LINE L2 -9 3304 3216 1900 137 10 20 chrX 128327220 128327520 -48646620 - AluJo SINE Alu -14 298 2 627 259 72 64 chrX 128327598 128327849 -48646291 - MIR SINE MIR 0 262 10 397 259 22 0 chrX 128328099 128328191 -48645949 + MIR3 SINE MIR 99 193 -15 2317 84 3 0 chrX 128328226 128328513 -48645627 + AluSg1 SINE Alu 1 288 -21 2439 46 0 0 chrX 128328514 128328818 -48645322 + AluY SINE Alu 1 304 0 1769 51 90 0 chrX 128329552 128329786 -48644354 + L1PA6 LINE L1 5899 6153 -1 321 302 0 0 chrX 128331177 128331263 -48642877 + MIR3 SINE MIR 109 194 -14 550 228 81 100 chrX 128332612 128332871 -48641269 + MIR SINE MIR 8 261 -1 2197 73 0 21 chrX 128333257 128333569 -48640571 + AluY SINE Alu 1 306 0 1648 180 0 24 chrX 128333607 128333896 -48640244 - AluJb SINE Alu -30 282 1 1027 198 32 0 chrX 128334169 128334416 -48639724 + L1MA9 LINE L1 6058 6312 0 21 0 0 0 chrX 128334490 128334511 -48639629 + AT_rich Low_complexity Low_complexity 1 21 0 282 269 69 31 chrX 128336294 128336454 -48637686 + L1ME4a LINE L1 5634 5799 -2009 636 112 291 0 chrX 128336517 128336651 -48637489 - AluJb SINE Alu -20 292 120 1115 199 38 0 chrX 128337913 128338124 -48636016 + AluJo SINE Alu 2 220 -92 298 26 0 0 chrX 128338124 128338162 -48635978 + AluSq/x SINE Alu 86 123 -179 1016 72 0 8 chrX 128338162 128338287 -48635853 - AluJb SINE Alu -167 145 22 290 263 105 18 chrX 128338304 128338532 -48635608 + L1ME4a LINE L1 5869 6116 -5 205 138 0 0 chrX 128339146 128339175 -48634965 + (GGA)n Simple_repeat Simple_repeat 1 29 0 351 218 13 26 chrX 128339326 128339404 -48634736 + L2 LINE L2 3183 3259 -54 26 0 0 0 chrX 128339742 128339768 -48634372 + AT_rich Low_complexity Low_complexity 1 26 0 815 98 8 0 chrX 128339780 128339903 -48634237 + (GA)n Simple_repeat Simple_repeat 1 124 0 1907 169 0 0 chrX 128340276 128340577 -48633563 - AluJo SINE Alu -11 301 1 593 287 115 3 chrX 128340596 128340892 -48633248 - L1ME LINE L1 -298 5823 5495 386 328 55 0 chrX 128342180 128342308 -48631832 + MIR SINE MIR 9 143 -119 225 160 20 20 chrX 128342329 128342379 -48631761 + (TA)n Simple_repeat Simple_repeat 1 50 0 282 95 0 0 chrX 128342950 128342992 -48631148 + (ATG)n Simple_repeat Simple_repeat 1 42 0 342 0 0 0 chrX 128343527 128343565 -48630575 + (TC)n Simple_repeat Simple_repeat 2 39 0 364 267 78 9 chrX 128344396 128344512 -48629628 + L3b LINE CR1 1456 1579 -4 319 309 75 48 chrX 128344910 128345098 -48629042 - MIR SINE MIR -50 212 20 474 33 0 0 chrX 128345935 128345995 -48628145 + (TG)n Simple_repeat Simple_repeat 1 60 0 2531 74 0 0 chrX 128346725 128347034 -48627106 - AluSx SINE Alu -3 309 1 242 325 51 17 chrX 128347198 128347315 -48626825 + L2 LINE L2 3191 3311 -2 442 271 37 0 chrX 128347439 128347546 -48626594 - MIR3 SINE MIR -44 164 54 1423 367 63 23 chrX 128349185 128349996 -48624144 + L3 LINE CR1 46 888 -689 748 42 0 0 chrX 128350197 128350292 -48623848 + AluY SINE Alu 217 311 0 435 345 35 25 chrX 128350474 128350671 -48623469 + MIR SINE MIR 20 218 -44 239 255 108 10 chrX 128350735 128350837 -48623303 + MIR SINE MIR 85 196 -66 360 59 0 0 chrX 128350974 128351025 -48623115 + (TG)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chrX 128352168 128352195 -48621945 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 324 82 73 chrX 128352345 128352985 -48621155 - L2 LINE L2 0 3272 2627 1536 124 0 21 chrX 128353068 128353302 -48620838 + MER30 DNA MER1_type 2 230 0 360 347 0 0 chrX 128354145 128354240 -48619900 + L2 LINE L2 3219 3313 0 225 255 0 0 chrX 128354281 128354332 -48619808 + MLT1-int LTR MaLR 1308 1358 -13 219 366 0 0 chrX 128355292 128355363 -48618777 - L2 LINE L2 -49 3223 3153 2247 135 0 0 chrX 128356383 128356695 -48617445 + AluSx SINE Alu 1 312 0 321 199 253 34 chrX 128356791 128356937 -48617203 + L1ME4a LINE L1 5942 6119 -2 225 184 105 26 chrX 128357032 128357108 -48617032 - MIR SINE MIR -98 164 83 702 251 121 26 chrX 128357228 128357338 -48616802 + L1ME4a LINE L1 5623 5721 -400 2404 85 0 0 chrX 128357338 128357645 -48616495 + AluSg SINE Alu 1 307 -3 702 251 121 26 chrX 128357645 128357988 -48616152 + L1ME4a LINE L1 5721 6119 -2 2647 64 0 0 chrX 128358628 128358974 -48615166 - AluSp SINE Alu 0 346 1 222 301 11 21 chrX 128359877 128359970 -48614170 + CT-rich Low_complexity Low_complexity 1 92 0 2305 88 7 0 chrX 128359976 128360270 -48613870 - AluSx SINE Alu -16 296 1 504 324 103 86 chrX 128362020 128362428 -48611712 - L2 LINE L2 -39 3233 2819 1741 60 13 30 chrX 128362508 128362742 -48611398 - MER30 DNA MER1_type 0 230 1 1902 149 3 0 chrX 128363521 128363810 -48610330 + AluJb SINE Alu 1 290 -22 909 79 0 0 chrX 128364022 128364136 -48610004 - AluSx SINE Alu -5 305 192 1117 81 0 0 chrX 128364137 128364273 -48609867 - AluSx SINE Alu -172 141 6 2275 116 0 0 chrX 128364777 128365079 -48609061 - AluSx SINE Alu -10 302 1 434 316 31 31 chrX 128365627 128365820 -48608320 - MIR SINE MIR -56 206 14 3589 209 14 12 chrX 128366602 128367445 -48606695 - L1MB8 LINE L1 -1 6177 5333 457 292 108 16 chrX 128367734 128367919 -48606221 - MIR SINE MIR -50 212 11 201 132 0 0 chrX 128368567 128368605 -48605535 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 136 45 0 chrX 128368874 128368918 -48605222 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 257 186 103 10 chrX 128368927 128369024 -48605116 - L1ME4a LINE L1 -17 6104 5999 1953 158 0 0 chrX 128369068 128369353 -48604787 + AluSx SINE Alu 5 289 -23 4490 125 16 29 chrX 128369564 128370364 -48603776 + L1MB2 LINE L1 5377 6166 -5 614 205 45 13 chrX 128370379 128370535 -48603605 + MER103 DNA DNA 2 162 -4 2429 94 3 0 chrX 128371382 128371691 -48602449 - AluSp SINE Alu -3 310 1 651 236 97 31 chrX 128371756 128371770 -48602370 - MIR3 SINE MIR 0 208 196 2200 111 0 0 chrX 128371770 128372081 -48602059 + AluSg SINE Alu 1 310 0 651 236 97 31 chrX 128372081 128372261 -48601879 - MIR3 SINE MIR -12 196 1 2357 94 0 0 chrX 128372793 128373090 -48601050 - AluSx SINE Alu -15 297 1 39083 64 6 5 chrX 128374143 128380284 -48593856 - L1PA5 LINE L1 -7 6147 1 2986 129 46 17 chrX 128380371 128380968 -48593172 - MER4B LTR ERV1 0 779 1 2287 113 0 0 chrX 128381223 128381524 -48592616 - AluY SINE Alu -9 302 2 4195 157 75 15 chrX 128381631 128382730 -48591410 - L1MB5 LINE L1 0 6410 5246 1241 123 0 0 chrX 128382744 128382915 -48591225 - AluSg/x SINE Alu -11 299 129 528 207 9 0 chrX 128382918 128383034 -48591106 - L1MB5 LINE L1 -1141 5241 5125 879 120 0 8 chrX 128383540 128383665 -48590475 + FLAM_C SINE Alu 1 124 -19 482 244 92 88 chrX 128383875 128384125 -48590015 - MIR SINE MIR -1 261 11 25 31 0 0 chrX 128384377 128384409 -48589731 + AT_rich Low_complexity Low_complexity 1 32 0 4900 231 50 40 chrX 128384409 128384466 -48589674 - L1MB5 LINE L1 -1242 5140 5085 2529 57 0 3 chrX 128384466 128384766 -48589374 + AluY SINE Alu 1 299 -12 4900 231 50 40 chrX 128384766 128385699 -48588441 - L1MB5 LINE L1 -1297 5085 4120 2286 61 7 0 chrX 128385699 128385996 -48588144 - L1PA7 LINE L1 -1 6153 5855 4900 231 50 40 chrX 128385996 128386765 -48587375 - L1MB5 LINE L1 -2262 4120 3361 3078 225 34 27 chrX 128386763 128387751 -48586389 - L1MB5 LINE L1 -4559 1825 831 * 289 229 31 94 chrX 128387883 128387979 -48586161 - MIR SINE MIR -56 206 117 243 266 202 32 chrX 128388657 128388781 -48585359 - MIR SINE MIR -8 254 110 213 139 23 0 chrX 128390213 128390256 -48583884 + C-rich Low_complexity Low_complexity 4 47 0 196 257 107 93 chrX 128393481 128393621 -48580519 + MIR3 SINE MIR 3 144 -64 911 121 0 21 chrX 128393901 128394041 -48580099 + FLAM_C SINE Alu 6 142 -1 328 190 0 0 chrX 128394087 128394145 -48579995 - L2 LINE L2 0 3272 3215 265 252 24 71 chrX 128394264 128394391 -48579749 + MIR SINE MIR 92 212 -50 702 245 48 89 chrX 128394572 128394740 -48579400 - MIR SINE MIR -1 261 107 2003 146 3 10 chrX 128394740 128395041 -48579099 + AluJo SINE Alu 1 299 -13 702 245 48 89 chrX 128395041 128395141 -48578999 - MIR SINE MIR -155 107 4 234 191 0 0 chrX 128395850 128395892 -48578248 - MIR SINE MIR -36 226 185 308 242 15 0 chrX 128395896 128395962 -48578178 - L2 LINE L2 -1 3271 3205 889 224 15 30 chrX 128396080 128396281 -48577859 - MIR SINE MIR -63 199 2 240 311 90 48 chrX 128397276 128397443 -48576697 + MIR SINE MIR 65 238 -24 827 117 0 0 chrX 128398114 128398225 -48575915 + FLAM_A SINE Alu 13 123 -19 275 272 0 49 chrX 128398226 128398307 -48575833 + MER5A DNA MER1_type 63 139 -50 1391 99 36 0 chrX 128398633 128398855 -48575285 - L1MA5 LINE L1 0 6300 6071 1586 142 62 0 chrX 128398855 128399115 -48575025 - MER1B DNA MER1_type -2 337 62 3459 104 31 6 chrX 128399121 128399667 -48574473 - L1MA5 LINE L1 -218 6082 5523 439 214 129 39 chrX 128399743 128399921 -48574219 + L1ME LINE L1 5605 5798 -323 586 305 45 17 chrX 128399948 128400125 -48574015 - MIR SINE MIR -59 203 22 341 300 83 25 chrX 128401268 128401388 -48572752 - L2 LINE L2 -5 3267 3141 4982 194 55 25 chrX 128401859 128403075 -48571065 + Charlie1a DNA MER1_type 2 1253 -202 1258 164 0 46 chrX 128403087 128403306 -48570834 + AluJb SINE Alu 87 295 -17 636 167 61 91 chrX 128403308 128403506 -48570634 + Charlie1a DNA MER1_type 1263 1454 -1 207 0 0 0 chrX 128403660 128403683 -48570457 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 659 81 0 0 chrX 128405366 128405465 -48568675 + L1PA13 LINE L1 6063 6161 -2 1594 165 59 0 chrX 128405653 128405926 -48568214 + AluJb SINE Alu 5 293 -19 220 310 159 26 chrX 128406064 128406177 -48567963 - MIR SINE MIR -61 147 20 920 199 0 0 chrX 128406390 128406551 -48567589 - FRAM SINE Alu -15 161 1 2711 135 26 9 chrX 128406578 128407044 -48567096 - L1MB1 LINE L1 0 6168 5695 2265 119 0 3 chrX 128407339 128407651 -48566489 - AluSq SINE Alu -2 311 1 225 352 25 43 chrX 128407900 128408062 -48566078 + L2 LINE L2 2772 2930 -384 2259 81 6 31 chrX 128408101 128408421 -48565719 - AluSx SINE Alu 0 312 1 489 348 61 30 chrX 128408514 128408744 -48565396 + MIR SINE MIR 20 256 -6 818 285 16 52 chrX 128408945 128409090 -48565050 - MIR SINE MIR -6 256 122 1861 45 4 28 chrX 128409090 128409337 -48564803 + L1PA5 LINE L1 5912 6152 -2 818 285 16 52 chrX 128409337 128409440 -48564700 - MIR SINE MIR -140 122 17 265 316 44 35 chrX 128409738 128409852 -48564288 - L3 LINE CR1 -1114 463 349 325 339 53 12 chrX 128410399 128410570 -48563570 + MIR3 SINE MIR 22 199 -9 348 80 0 0 chrX 128410813 128410863 -48563277 - MADE1 DNA Mariner -30 50 1 900 164 73 173 chrX 128411127 128411567 -48562573 - MSTD LTR MaLR 0 396 1 1931 133 103 3 chrX 128411672 128411818 -48562322 - THE1B LTR MaLR 0 364 234 2045 95 4 0 chrX 128411818 128412082 -48562058 + AluSp SINE Alu 31 295 -18 1931 133 103 3 chrX 128412082 128412266 -48561874 - THE1B LTR MaLR -130 234 1 207 0 0 0 chrX 128412724 128412747 -48561393 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 209 57 29 0 chrX 128413053 128413088 -48561052 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2329 225 38 25 chrX 128463353 128463593 -48510547 + L1M4 LINE L1 2524 2759 -3387 2095 120 0 13 chrX 128463593 128463892 -48510248 + AluY SINE Alu 17 311 0 297 0 0 0 chrX 128463894 128463927 -48510213 + (TA)n Simple_repeat Simple_repeat 2 34 0 2329 225 38 25 chrX 128463927 128464475 -48509665 + L1M4 LINE L1 2759 3325 -2821 1124 50 0 0 chrX 128464549 128464690 -48509450 + L1PA8 LINE L1 6030 6170 -2 1285 214 56 37 chrX 128465776 128466154 -48507986 + MLT1B LTR MaLR 1 385 -5 180 307 23 23 chrX 128467912 128468000 -48506140 + MIR3 SINE MIR 91 178 -30 2231 141 0 0 chrX 128468207 128468511 -48505629 - AluSx SINE Alu -3 309 6 14144 79 2 1 chrX 128470234 128472277 -48501863 - L1P LINE L1 -1859 4287 2243 1341 180 35 16 chrX 128472377 128472693 -48501447 - L1 LINE L1 -981 5165 4844 * 15614 40 1 1 chrX 128472689 128474701 -48499439 - L1P LINE L1 -945 5201 3189 2087 95 6 0 chrX 128474700 128475017 -48499123 + L1P LINE L1 1003 1321 -4825 * 29115 105 9 14 chrX 128475126 128475901 -48498239 - L1PA7 LINE L1 -197 7395 6618 9101 40 1 0 chrX 128475901 128476970 -48497170 + MER11C LTR ERVK 1 1070 -1 29115 105 9 14 chrX 128476970 128481637 -48492503 - L1PA7 LINE L1 -974 6618 1148 3268 216 23 32 chrX 128481885 128482961 -48491179 + L1M4 LINE L1 2198 3263 -2883 1412 173 13 21 chrX 128482982 128483219 -48490921 + AluJb SINE Alu 1 235 -77 895 138 20 0 chrX 128483298 128483450 -48490690 + L1PA5 LINE L1 5981 6135 -19 314 23 0 23 chrX 128483453 128483497 -48490643 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 202 233 0 0 chrX 128483649 128483692 -48490448 - MIR3 SINE MIR -4 204 162 2476 252 43 52 chrX 128485078 128485148 -48488992 + L2 LINE L2 625 694 -2620 309 26 0 0 chrX 128485148 128485186 -48488954 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 1569 170 22 22 chrX 128485192 128485462 -48488678 - AluJb SINE Alu -42 270 1 2476 252 43 52 chrX 128485462 128486084 -48488056 + L2 LINE L2 699 1317 -1997 2366 121 31 14 chrX 128486084 128486440 -48487700 - THE1B LTR MaLR -2 362 1 2476 252 43 52 chrX 128486440 128486632 -48487508 + L2 LINE L2 1317 1509 -1805 2943 163 105 27 chrX 128486633 128487307 -48486833 + LTR8A LTR ERV1 1 727 0 425 266 28 7 chrX 128487362 128487505 -48486635 + L2 LINE L2 1550 1695 -1619 2305 126 48 3 chrX 128487828 128488020 -48486120 - MLT1B LTR MaLR 0 390 208 192 40 0 0 chrX 128488020 128488045 -48486095 + (TG)n Simple_repeat Simple_repeat 2 26 0 2305 126 48 3 chrX 128488045 128488225 -48485915 - MLT1B LTR MaLR -182 208 1 546 299 115 17 chrX 128489501 128489737 -48484403 - L2 LINE L2 -264 3049 2745 233 89 268 0 chrX 128490048 128490104 -48484036 - AluJ/FRAM SINE Alu -4 298 228 354 296 0 0 chrX 128490459 128490547 -48483593 + L2 LINE L2 3185 3272 0 745 120 17 17 chrX 128492415 128492532 -48481608 + FRAM SINE Alu 33 149 -27 561 140 0 79 chrX 128492701 128492815 -48481325 - MER5B DNA MER1_type -72 106 2 431 221 248 0 chrX 128492855 128493004 -48481136 + MIR SINE MIR 48 233 -29 1922 167 3 6 chrX 128493045 128493451 -48480689 - AluJb SINE Alu 0 405 1 429 295 224 45 chrX 128493653 128493752 -48480388 + L3 LINE CR1 817 897 -680 2073 136 7 0 chrX 128493752 128494054 -48480086 + AluJb SINE Alu 1 304 -8 429 295 224 45 chrX 128494054 128494418 -48479722 + L3 LINE CR1 897 1363 -214 250 317 144 0 chrX 128494530 128494634 -48479506 + MIR3 SINE MIR 65 183 -25 229 278 0 0 chrX 128494633 128494687 -48479453 - L2 LINE L2 -6 3307 3254 * 1608 155 35 51 chrX 128494734 128494919 -48479221 - AluJb SINE Alu -1 311 132 279 0 0 0 chrX 128494919 128494950 -48479190 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1608 155 35 51 chrX 128494950 128495080 -48479060 - AluJb SINE Alu -180 132 1 506 269 0 7 chrX 128496152 128496293 -48477847 + MIR3 SINE MIR 30 169 -39 208 330 18 0 chrX 128496293 128496402 -48477738 + CT-rich Low_complexity Low_complexity 1 111 0 1261 165 142 27 chrX 128496450 128496710 -48477430 - AluJb SINE Alu -12 290 1 1774 162 0 28 chrX 128497377 128497667 -48476473 - AluJb SINE Alu -30 282 1 765 153 0 36 chrX 128497902 128498039 -48476101 - FLAM_A SINE Alu 0 142 11 250 273 0 0 chrX 128498061 128498127 -48476013 - L2 LINE L2 -1 3312 3247 392 331 22 22 chrX 128498340 128498518 -48475622 + L2 LINE L2 2231 2408 -906 1818 93 119 8 chrX 128498657 128498925 -48475215 - AluSg SINE Alu -10 300 3 344 299 47 8 chrX 128498947 128499074 -48475066 + L2 LINE L2 3140 3271 -1 2477 156 50 2 chrX 128499202 128499606 -48474534 - MSTB LTR MaLR -2 424 2 214 312 71 56 chrX 128499606 128499935 -48474205 - L2 LINE L2 -299 2973 2635 266 246 0 0 chrX 128499954 128500015 -48474125 + L2 LINE L2 2578 2638 -676 214 300 0 0 chrX 128500055 128500125 -48474015 - L2 LINE L2 -694 2620 2551 344 329 117 15 chrX 128500353 128500754 -48473386 - L2 LINE L2 -841 2473 2032 4110 166 9 63 chrX 128500787 128500958 -48473182 + L1MB7 LINE L1 5334 5513 -671 1898 170 3 0 chrX 128500958 128501258 -48472882 + AluJb SINE Alu 1 301 -11 4110 166 9 63 chrX 128501258 128501644 -48472496 + L1MB7 LINE L1 5513 5824 -360 2163 117 3 0 chrX 128501644 128501943 -48472197 - AluSx SINE Alu -12 300 1 4110 166 9 63 chrX 128501943 128502277 -48471863 + L1MB7 LINE L1 5824 6175 -9 784 176 6 6 chrX 128504337 128504513 -48469627 + CT-rich Low_complexity Low_complexity 4 179 0 322 286 25 61 chrX 128504553 128504749 -48469391 - L1ME3A LINE L1 -8 6162 5974 697 257 59 18 chrX 128504785 128505025 -48469115 - MIR SINE MIR -12 250 5 254 29 29 0 chrX 128505060 128505095 -48469045 + (CCTG)n Simple_repeat Simple_repeat 1 36 0 252 122 0 0 chrX 128505142 128505183 -48468957 + (GA)n Simple_repeat Simple_repeat 2 42 0 615 201 45 89 chrX 128508064 128508133 -48466007 - MER5B DNA MER1_type 0 178 107 2022 127 3 0 chrX 128508133 128508458 -48465682 + AluSq SINE Alu 1 326 0 615 201 45 89 chrX 128508458 128508566 -48465574 - MER5B DNA MER1_type -71 107 8 1933 213 73 19 chrX 128508975 128509454 -48464686 - MLT1D LTR MaLR 0 505 1 293 108 0 0 chrX 128510536 128510608 -48463532 - Alu SINE Alu 0 315 244 453 106 0 0 chrX 128510697 128510763 -48463377 - L1MB8 LINE L1 -10 6168 6103 1535 182 16 16 chrX 128510794 128511112 -48463028 - L1MB4 LINE L1 -6 6174 5857 1006 133 0 6 chrX 128511129 128511295 -48462845 - L1MA5 LINE L1 0 6300 6136 2817 161 24 8 chrX 128511295 128511806 -48462334 - L1MB4 LINE L1 -302 5878 5360 216 213 21 0 chrX 128511807 128511854 -48462286 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3549 201 15 18 chrX 128511854 128512678 -48461462 - L1MB4 LINE L1 -780 5366 4546 1189 182 56 44 chrX 128512813 128512916 -48461224 + MER33 DNA MER1_type 2 102 -2483 2418 103 3 0 chrX 128512916 128513228 -48460912 + AluSp SINE Alu 1 313 0 1189 182 56 44 chrX 128513228 128513361 -48460779 + MER33 DNA MER1_type 102 246 -2339 1748 167 3 33 chrX 128513361 128513666 -48460474 - AluJb SINE Alu -3 309 14 1189 182 56 44 chrX 128513666 128513747 -48460393 + MER33 DNA MER1_type 245 324 0 204 40 0 0 chrX 128513838 128513863 -48460277 + (TG)n Simple_repeat Simple_repeat 2 26 0 1429 232 67 85 chrX 128513864 128514233 -48459907 - MLT1F1 LTR MaLR -6 561 200 1841 152 0 23 chrX 128514233 128514561 -48459579 - AluSx SINE Alu 0 312 1 1429 232 67 85 chrX 128514561 128514758 -48459382 - MLT1F1 LTR MaLR -367 200 1 201 154 0 0 chrX 128514830 128514869 -48459271 + A-rich Low_complexity Low_complexity 1 39 0 1692 122 4 53 chrX 128515027 128515289 -48458851 - AluSx SINE Alu -16 296 48 1837 133 50 17 chrX 128516596 128516898 -48457242 + AluJb SINE Alu 1 312 0 186 43 0 0 chrX 128516901 128516924 -48457216 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 1518 167 38 28 chrX 128518304 128518591 -48455549 + AluJo SINE Alu 1 290 -22 1052 67 15 8 chrX 128518591 128518725 -48455415 + AluSq/x SINE Alu 1 135 -178 2136 122 6 10 chrX 128518725 128519037 -48455103 + AluSx SINE Alu 1 311 -1 998 199 0 0 chrX 128519589 128519755 -48454385 - FRAM SINE Alu 0 166 1 845 166 83 0 chrX 128519852 128520019 -48454121 + AluJb SINE Alu 140 312 0 2016 146 7 0 chrX 128520831 128521126 -48453014 + AluJb SINE Alu 1 297 -15 465 180 30 10 chrX 128522028 128522128 -48452012 + MIR SINE MIR 52 153 -55 244 132 0 0 chrX 128522478 128522516 -48451624 - L2 LINE L2 -14 3299 3262 241 205 77 0 chrX 128522834 128522912 -48451228 - L1MC4 LINE L1 -1344 6698 6615 241 247 74 0 chrX 128522915 128522996 -48451144 - L1MC4 LINE L1 -1341 6701 6615 233 119 0 0 chrX 128522997 128523039 -48451101 + LTR66 LTR ERVL 398 439 -171 319 235 47 0 chrX 128523041 128523126 -48451014 - L1MC4 LINE L1 -1339 6703 6615 273 278 0 0 chrX 128523127 128523217 -48450923 - L1MC4 LINE L1 -1339 6703 6614 232 258 0 22 chrX 128523177 128523266 -48450874 + L1MC4 LINE L1 6614 6700 -1342 * 251 258 0 21 chrX 128523249 128523342 -48450798 - L1MC4 LINE L1 -1339 6703 6613 1970 132 7 17 chrX 128523344 128523639 -48450501 - AluSx SINE Alu -20 292 1 267 326 10 0 chrX 128523708 128523806 -48450334 - L1ME LINE L1 -287 5883 5785 2094 133 0 3 chrX 128523959 128524268 -48449872 - AluSx SINE Alu -4 308 1 1016 112 8 0 chrX 128524268 128524402 -48449738 - AluSq/x SINE Alu -178 135 1 1383 254 25 37 chrX 128524514 128524919 -48449221 - MARNA DNA Mariner -50 536 137 441 0 0 0 chrX 128524946 128524995 -48449145 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 292 23 53 chrX 128525052 128525223 -48448917 + L3 LINE CR1 839 1004 -573 2135 133 3 0 chrX 128525473 128525788 -48448352 - L1PB4 LINE L1 0 6156 5841 725 115 29 0 chrX 128525788 128525892 -48448248 - U6 snRNA snRNA 0 107 1 201 270 16 0 chrX 128525921 128525984 -48448156 + L3 LINE CR1 1314 1377 -200 353 80 0 0 chrX 128526013 128526063 -48448077 + L1PA7 LINE L1 6102 6151 -3 1451 60 0 0 chrX 128526213 128526381 -48447759 - AluY SINE Alu -17 294 127 297 286 25 34 chrX 128526525 128526644 -48447496 + L3 LINE CR1 1369 1486 -91 270 86 0 0 chrX 128526854 128526889 -48447251 + AluSx SINE Alu 1 35 -268 1654 169 15 4 chrX 128526942 128527209 -48446931 + AluSx SINE Alu 28 297 -15 203 204 23 0 chrX 128527734 128527778 -48446362 - MIR SINE MIR -62 146 102 2280 104 0 7 chrX 128528727 128529024 -48445116 - AluSx SINE Alu -16 296 2 400 270 27 9 chrX 128529109 128529220 -48444920 + L2 LINE L2 3201 3313 0 206 219 0 0 chrX 128529852 128529893 -48444247 + GA-rich Low_complexity Low_complexity 2 42 0 269 289 144 15 chrX 128531677 128531948 -48442192 - L1ME LINE L1 -551 5570 5265 801 163 0 0 chrX 128532719 128532872 -48441268 - AluJ SINE Alu 0 315 163 978 154 0 53 chrX 128532917 128533086 -48441054 - AluJ SINE Alu -152 160 1 625 283 44 22 chrX 128533131 128533357 -48440783 - MIR SINE MIR 0 262 32 3942 79 4 0 chrX 128534254 128534773 -48439367 + L1PB2 LINE L1 5629 6149 -2 284 281 61 113 chrX 128534861 128534981 -48439159 - L2 LINE L2 -349 2965 2840 369 0 0 0 chrX 128534981 128535022 -48439118 + (TG)n Simple_repeat Simple_repeat 1 41 0 284 281 61 113 chrX 128535022 128535228 -48438912 - L2 LINE L2 -474 2840 2656 263 114 0 0 chrX 128535844 128535879 -48438261 - AluJ/FLAM SINE Alu -211 91 57 645 273 0 12 chrX 128535886 128536058 -48438082 + MIR3 SINE MIR 33 202 -6 1960 142 7 0 chrX 128537196 128537484 -48436656 - AluSx SINE Alu -22 290 1 1818 183 0 3 chrX 128538013 128538314 -48435826 + AluJb SINE Alu 1 300 -12 1717 150 29 21 chrX 128538616 128538896 -48435244 - AluJo SINE Alu -30 282 1 215 294 82 37 chrX 128539191 128539436 -48434704 - L2 LINE L2 -1212 2102 1847 884 154 84 0 chrX 128539443 128539586 -48434554 + FAM SINE Alu 12 166 -19 975 189 9 20 chrX 128539828 128540070 -48434070 + L1MB5 LINE L1 5659 5861 -313 1446 167 26 0 chrX 128540485 128540754 -48433386 + L1MB5 LINE L1 5861 6136 -38 3368 113 32 0 chrX 128540757 128541251 -48432889 + L1MA4 LINE L1 5508 6017 -283 333 193 36 0 chrX 128541268 128541351 -48432789 + L1MB4 LINE L1 6095 6180 0 240 186 0 17 chrX 128541351 128541410 -48432730 + L1MB3 LINE L1 6126 6183 0 1677 164 36 0 chrX 128541713 128542024 -48432116 - AluJb SINE Alu 0 323 3 219 36 0 0 chrX 128542475 128542503 -48431637 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2306 112 48 25 chrX 128542730 128543086 -48431054 + THE1B LTR MaLR 1 364 0 278 414 10 24 chrX 128543388 128543685 -48430455 + L2 LINE L2 2684 2976 -338 617 232 16 0 chrX 128543685 128544008 -48430132 + CT-rich Low_complexity Low_complexity 1 328 0 2327 104 3 0 chrX 128544071 128544380 -48429760 - AluSq SINE Alu -3 310 1 214 213 50 50 chrX 128544391 128544471 -48429669 + L2 LINE L2 3004 3083 -189 466 307 25 20 chrX 128546114 128546316 -48427824 + L3 LINE CR1 1374 1576 -1 509 204 16 99 chrX 128547811 128548002 -48426138 - L1MB8 LINE L1 -1 6177 6003 195 42 0 0 chrX 128548063 128548087 -48426053 + (TC)n Simple_repeat Simple_repeat 2 25 0 2343 100 0 0 chrX 128548087 128548376 -48425764 - AluSc SINE Alu -19 290 2 598 108 0 0 chrX 128548378 128548461 -48425679 - AluJb SINE Alu -11 301 219 3256 99 61 61 chrX 128548461 128549016 -48425124 + LTR10A LTR ERV1 1 555 -54 483 204 0 0 chrX 128549028 128549116 -48425024 - AluJb SINE Alu -90 222 135 978 173 12 0 chrX 128549116 128549278 -48424862 - FRAM SINE Alu -12 164 1 597 288 106 70 chrX 128549278 128549611 -48424529 + L2 LINE L2 1979 2299 -1015 2336 115 0 0 chrX 128549611 128549916 -48424224 + AluSx SINE Alu 1 305 -7 597 288 106 70 chrX 128549916 128550221 -48423919 + L2 LINE L2 2299 2640 -674 551 298 30 5 chrX 128550443 128550641 -48423499 - L1MC4a LINE L1 -1943 5865 5663 1193 116 16 11 chrX 128550810 128550999 -48423141 + L1PA2 LINE L1 5963 6152 -3 2600 58 0 3 chrX 128551077 128551387 -48422753 + AluY SINE Alu 1 309 -2 201 39 0 0 chrX 128551527 128551553 -48422587 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 2254 78 3 7 chrX 128552676 128553016 -48421124 + AluSg1 SINE Alu 1 339 0 598 153 0 0 chrX 128553137 128553249 -48420891 - AluSg/x SINE Alu 0 316 205 220 342 58 25 chrX 128553426 128553546 -48420594 - L2 LINE L2 -11 3261 3138 267 116 14 29 chrX 128553954 128554023 -48420117 + (TC)n Simple_repeat Simple_repeat 2 69 0 2240 115 0 0 chrX 128554522 128554817 -48419323 + AluSx SINE Alu 1 295 -17 411 118 0 0 chrX 128554830 128554898 -48419242 + L1MA7 LINE L1 6224 6291 0 2028 155 0 0 chrX 128556414 128556718 -48417422 + AluSx SINE Alu 1 304 -8 224 292 99 31 chrX 128556890 128557051 -48417089 + MIR SINE MIR 32 203 -59 662 153 105 8 chrX 128557299 128557423 -48416717 - FRAM SINE Alu -16 160 25 336 283 289 7 chrX 128558658 128558810 -48415330 + MIR SINE MIR 57 251 -11 250 290 60 30 chrX 128559486 128559586 -48414554 + L2 LINE L2 3169 3271 -1 386 312 144 9 chrX 128559897 128560121 -48414019 + MIR SINE MIR 11 256 -6 300 307 50 0 chrX 128562359 128562460 -48411680 - L2 LINE L2 -4 3268 3163 383 241 86 17 chrX 128562502 128562618 -48411522 - MIR SINE MIR -70 192 69 1922 142 3 7 chrX 128562950 128563245 -48410895 + AluJb SINE Alu 1 294 -18 2426 78 0 0 chrX 128563962 128564256 -48409884 - AluY SINE Alu -17 294 1 2342 101 3 0 chrX 128564258 128564565 -48409575 - AluSp SINE Alu -4 309 2 1365 56 0 0 chrX 128565431 128565592 -48408548 - AluY SINE Alu -15 296 136 6109 215 68 11 chrX 128566092 128567663 -48406477 + L1M4 LINE L1 2671 4330 -1816 250 273 0 0 chrX 128567827 128567893 -48406247 + L2 LINE L2 3247 3312 -1 765 153 0 36 chrX 128567915 128568052 -48406088 + FLAM_A SINE Alu 11 142 0 1774 162 0 28 chrX 128568287 128568577 -48405563 + AluJb SINE Alu 1 282 -30 1261 165 142 27 chrX 128569244 128569504 -48404636 + AluJb SINE Alu 1 290 -12 208 330 18 0 chrX 128569552 128569661 -48404479 + GA-rich Low_complexity Low_complexity 1 111 0 506 269 0 7 chrX 128569661 128569802 -48404338 - MIR3 SINE MIR -39 169 30 1608 155 35 51 chrX 128570876 128571006 -48403134 + AluJb SINE Alu 1 132 -180 279 0 0 0 chrX 128571006 128571037 -48403103 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1608 155 35 51 chrX 128571037 128571222 -48402918 + AluJb SINE Alu 132 311 -1 229 278 0 0 chrX 128571269 128571323 -48402817 + L2 LINE L2 3254 3307 -6 * 250 317 144 0 chrX 128571322 128571426 -48402714 - MIR3 SINE MIR -25 183 65 429 295 224 45 chrX 128571538 128571902 -48402238 - L3 LINE CR1 -214 1363 897 2082 135 7 0 chrX 128571902 128572205 -48401935 - AluJb SINE Alu -7 305 1 429 295 224 45 chrX 128572205 128572304 -48401836 - L3 LINE CR1 -680 897 817 1923 167 3 6 chrX 128572506 128572925 -48401215 + AluJb SINE Alu 1 418 0 431 221 248 0 chrX 128572966 128573115 -48401025 - MIR SINE MIR -29 233 48 811 178 0 59 chrX 128573155 128573324 -48400816 + MER5B DNA MER1_type 2 160 -18 2183 77 88 0 chrX 128573625 128573910 -48400230 + AluSp SINE Alu 2 311 -2 250 162 44 0 chrX 128574869 128574937 -48399203 + CT-rich Low_complexity Low_complexity 2 72 0 2228 98 7 16 chrX 128575044 128575351 -48398789 - AluSx SINE Alu -8 304 1 383 235 0 9 chrX 128575351 128575466 -48398674 + CT-rich Low_complexity Low_complexity 1 114 0 200 163 23 0 chrX 128576627 128576670 -48397470 + A-rich Low_complexity Low_complexity 2 45 0 531 204 0 0 chrX 128576829 128576917 -48397223 + AluJ/FLAM SINE Alu 9 96 -216 842 188 13 0 chrX 128576917 128577066 -48397074 + AluJo/FRAM SINE Alu 129 279 -33 534 214 21 0 chrX 128577074 128577219 -48396921 + GA-rich Low_complexity Low_complexity 2 149 0 232 147 0 0 chrX 128577219 128577253 -48396887 + (GGAAA)n Simple_repeat Simple_repeat 2 35 0 657 170 104 66 chrX 128578512 128578724 -48395416 - L1MB8 LINE L1 0 6178 5959 1749 139 39 36 chrX 128578728 128579055 -48395085 - AluJb SINE Alu 0 328 1 1039 147 0 26 chrX 128579055 128579216 -48394924 - L1MB8 LINE L1 -733 5441 5285 1929 81 157 0 chrX 128579216 128579477 -48394663 - AluSx SINE Alu -10 302 1 1039 147 0 26 chrX 128579477 128579547 -48394593 - L1MB8 LINE L1 -889 5285 5215 442 209 18 55 chrX 128579557 128579589 -48394551 - MER58 DNA MER1_type -109 106 74 652 194 0 37 chrX 128579589 128579723 -48394417 + FLAM_A SINE Alu 1 129 -4 442 209 18 55 chrX 128579723 128579800 -48394340 - MER58 DNA MER1_type -141 74 1 4502 180 31 49 chrX 128580889 128581062 -48393078 + L1MB4 LINE L1 4821 4996 -1184 1857 165 0 0 chrX 128581062 128581377 -48392763 + AluJo SINE Alu 1 315 0 4502 180 31 49 chrX 128581377 128581678 -48392462 + L1MB4 LINE L1 4996 5301 -879 2088 133 7 7 chrX 128581678 128581972 -48392168 + AluSx SINE Alu 1 294 -18 4502 180 31 49 chrX 128581972 128582496 -48391644 + L1MB4 LINE L1 5301 5833 -347 1971 126 0 50 chrX 128582496 128582814 -48391326 - AluJb SINE Alu -10 302 1 4502 180 31 49 chrX 128582814 128582870 -48391270 + L1MB4 LINE L1 5833 5888 -292 2330 75 0 0 chrX 128582870 128583188 -48390952 + AluY SINE Alu 1 318 0 4502 180 31 49 chrX 128583188 128583511 -48390629 + L1MB4 LINE L1 5888 6180 0 2237 114 0 3 chrX 128583634 128583940 -48390200 + AluSq SINE Alu 1 305 -8 2133 110 24 0 chrX 128584182 128584472 -48389668 + AluSx SINE Alu 1 297 -15 356 164 0 0 chrX 128584890 128584937 -48389203 + AluJb SINE Alu 1 47 -255 3056 82 0 19 chrX 128584937 128585349 -48388791 + MLT2A1 LTR ERVL 1 404 -40 302 235 0 0 chrX 128585353 128585421 -48388719 + L1MC4 LINE L1 6636 6703 -1339 203 161 0 0 chrX 128585421 128585452 -48388688 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 340 147 0 12 chrX 128585452 128585474 -48388666 + MLT2A2 LTR ERVL 399 420 -33 1173 113 0 0 chrX 128585474 128585651 -48388489 + (TA)n Simple_repeat Simple_repeat 2 178 0 340 147 0 12 chrX 128585651 128585691 -48388449 + MLT2A2 LTR ERVL 420 453 0 1481 143 15 46 chrX 128585691 128585950 -48388190 + AluJb SINE Alu 43 293 -19 2149 132 0 0 chrX 128586893 128587189 -48386951 + AluSx SINE Alu 1 296 -16 10315 58 6 79 chrX 128587192 128588687 -48385453 + SVA Other Other 1 1386 0 1554 268 43 58 chrX 128590206 128590317 -48383823 + L2 LINE L2 2247 2358 -956 838 158 0 0 chrX 128590317 128590444 -48383696 - FLAM_C SINE Alu -4 129 3 1554 268 43 58 chrX 128590444 128590632 -48383508 + L2 LINE L2 2358 2547 -767 2303 123 0 0 chrX 128590632 128590942 -48383198 - AluSg SINE Alu 0 310 1 1554 268 43 58 chrX 128590942 128591308 -48382832 + L2 LINE L2 2547 2903 -411 1086 152 0 6 chrX 128591308 128591479 -48382661 + AluSg/x SINE Alu 126 295 -15 1012 245 142 22 chrX 128591481 128591840 -48382300 + L2 LINE L2 2910 3311 -2 488 232 0 110 chrX 128592210 128592324 -48381816 + L2 LINE L2 3176 3270 -43 2358 78 0 0 chrX 128592324 128592633 -48381507 + AluY SINE Alu 3 311 0 488 232 0 110 chrX 128592633 128592673 -48381467 + L2 LINE L2 3270 3313 0 266 268 42 0 chrX 128592958 128593029 -48381111 - MIR SINE MIR -18 244 171 404 232 101 89 chrX 128594241 128594409 -48379731 - MIR SINE MIR -91 171 2 2074 110 0 0 chrX 128595150 128595515 -48378625 - AluSx SINE Alu 0 365 1 1664 143 32 4 chrX 128597210 128597489 -48376651 + AluJo SINE Alu 1 287 -25 2037 127 0 0 chrX 128597624 128597978 -48376162 - AluSx SINE Alu 0 354 1 195 129 0 0 chrX 128598136 128598167 -48375973 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 328 295 68 16 chrX 128598216 128598406 -48375734 + L2 LINE L2 1234 1433 -1881 1709 157 30 7 chrX 128598620 128598920 -48375220 - AluSx SINE Alu -5 307 1 419 306 25 118 chrX 128598998 128599517 -48374623 + L2 LINE L2 2230 2700 -614 1066 268 72 62 chrX 128599754 128600204 -48373936 + L1ME3A LINE L1 5451 5912 -258 1440 93 0 10 chrX 128600204 128600408 -48373732 + L1PA14 LINE L1 5958 6159 -2 1066 268 72 62 chrX 128600408 128600665 -48373475 + L1ME3A LINE L1 5912 6165 -5 2074 78 0 82 chrX 128600667 128600986 -48373154 + AluSg SINE Alu 1 293 -17 2281 68 0 23 chrX 128601009 128601318 -48372822 + AluY SINE Alu 1 302 -9 891 120 0 23 chrX 128601358 128601491 -48372649 - FLAM_A SINE Alu 0 133 4 1182 169 143 11 chrX 128601570 128601707 -48372433 - AluJo SINE Alu -1 301 183 1937 148 0 0 chrX 128601707 128601997 -48372143 + AluSx SINE Alu 1 290 -22 1182 169 143 11 chrX 128601997 128602125 -48372015 - AluJo SINE Alu -119 183 1 336 259 130 37 chrX 128602246 128602408 -48371732 + L2 LINE L2 2596 2772 -542 775 138 8 8 chrX 128602520 128602643 -48371497 + FRAM SINE Alu 28 150 -26 254 96 0 19 chrX 128602652 128602704 -48371436 + (TA)n Simple_repeat Simple_repeat 2 52 0 695 112 69 45 chrX 128602724 128602804 -48371336 + L1P4 LINE L1 5320 5397 -769 2126 130 0 0 chrX 128602804 128603112 -48371028 + AluSx SINE Alu 3 310 -2 695 112 69 45 chrX 128603112 128603181 -48370959 + L1P4 LINE L1 5397 5435 -731 516 32 0 0 chrX 128603181 128603243 -48370897 + (TA)n Simple_repeat Simple_repeat 2 63 0 695 112 69 45 chrX 128603243 128603287 -48370853 + L1P4 LINE L1 5435 5476 -690 1668 158 11 4 chrX 128604103 128604376 -48369764 + AluSx SINE Alu 1 275 -37 180 0 0 0 chrX 128604380 128604400 -48369740 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 587 112 67 0 chrX 128604441 128604530 -48369610 + FLAM_A SINE Alu 34 128 -14 5734 115 26 3 chrX 128604531 128604769 -48369371 + L1PA16 LINE L1 4285 4516 -1650 1956 129 0 0 chrX 128604769 128605049 -48369091 + AluSx SINE Alu 1 280 -32 378 17 33 17 chrX 128605049 128605109 -48369031 + (CAAA)n Simple_repeat Simple_repeat 4 64 0 5734 115 26 3 chrX 128605109 128606090 -48368050 + L1PA16 LINE L1 4516 5521 -645 189 0 0 0 chrX 128606090 128606111 -48368029 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5734 115 26 3 chrX 128606111 128606763 -48367377 + L1PA16 LINE L1 5521 6157 -9 315 247 86 11 chrX 128606830 128606923 -48367217 + L1ME4a LINE L1 6021 6120 -1 1785 249 44 76 chrX 128606957 128607729 -48366411 + L1ME LINE L1 464 1210 -5320 1827 140 24 7 chrX 128607729 128608022 -48366118 + AluSx SINE Alu 1 298 -14 1785 249 44 76 chrX 128608022 128608062 -48366078 + L1ME LINE L1 1210 1250 -5280 404 161 0 0 chrX 128608063 128608125 -48366015 + AluJ/FRAM SINE Alu 233 294 -8 781 129 0 0 chrX 128608136 128608252 -48365888 + L1PA15 LINE L1 6029 6144 -21 2010 129 0 0 chrX 128608349 128608658 -48365482 + AluSx SINE Alu 1 309 0 404 246 54 62 chrX 128608676 128608936 -48365204 + L1ME LINE L1 1232 1489 -5041 1710 144 0 17 chrX 128608948 128609247 -48364893 + AluJo SINE Alu 1 294 -18 653 213 62 0 chrX 128609250 128609410 -48364730 + L1ME LINE L1 1732 1901 -4639 2677 174 19 0 chrX 128609450 128609881 -48364259 - MER70A LTR ERVL 0 472 34 2290 77 0 13 chrX 128609908 128610219 -48363921 + AluSc SINE Alu 3 309 0 898 225 0 0 chrX 128610788 128610961 -48363179 + FAM SINE Alu 1 173 -2 400 301 69 80 chrX 128610968 128611191 -48362949 + L1ME4a LINE L1 5630 5851 -313 2163 97 0 3 chrX 128611191 128611490 -48362650 - AluSg1 SINE Alu -11 298 1 400 301 69 80 chrX 128611490 128611555 -48362585 + L1ME4a LINE L1 5851 5915 -249 455 366 53 16 chrX 128611576 128611819 -48362321 - L2 LINE L2 0 3272 3021 33 66 0 0 chrX 128611886 128611947 -48362193 + AT_rich Low_complexity Low_complexity 1 61 0 2074 124 7 3 chrX 128612040 128612347 -48361793 - AluSx SINE Alu -2 310 3 2237 107 0 3 chrX 128612393 128612702 -48361438 + AluSc SINE Alu 1 308 -1 1498 148 0 112 chrX 128612813 128613152 -48360988 + AluJo SINE Alu 1 301 -11 1548 210 38 69 chrX 128613298 128613615 -48360525 + MLT1C LTR MaLR 6 305 -162 1186 189 156 40 chrX 128613615 128613935 -48360205 + MLT2D LTR ERVL 1 371 -43 1683 170 3 26 chrX 128613935 128614247 -48359893 + AluJo SINE Alu 1 305 -7 1186 189 156 40 chrX 128614247 128614297 -48359843 + MLT2D LTR ERVL 371 414 0 1548 210 38 69 chrX 128614297 128614456 -48359684 + MLT1C LTR MaLR 305 467 0 262 283 117 107 chrX 128614613 128614673 -48359467 + MIR SINE MIR 47 105 -157 6952 52 3 9 chrX 128614673 128615549 -48358591 + L1PA8 LINE L1 5300 6170 -2 262 283 117 107 chrX 128615549 128615640 -48358500 + MIR SINE MIR 105 203 -59 1518 119 119 11 chrX 128615640 128615918 -48358222 + AluSg SINE Alu 1 308 -2 262 283 117 107 chrX 128615918 128615970 -48358170 + MIR SINE MIR 203 253 -9 240 261 0 0 chrX 128615970 128616016 -48358124 + polypyrimidine Low_complexity Low_complexity 2 47 0 551 252 157 7 chrX 128617074 128617221 -48356919 + MER5A DNA MER1_type 21 189 0 595 279 92 22 chrX 128617568 128617797 -48356343 + MIR SINE MIR 6 250 -12 1429 83 0 69 chrX 128617877 128617966 -48356174 + L1PB3 LINE L1 5951 6045 -109 2298 47 9 28 chrX 128617966 128618283 -48355857 + AluY SINE Alu 1 311 0 1429 83 0 69 chrX 128618283 128618411 -48355729 + L1PB3 LINE L1 6045 6153 -1 696 256 0 0 chrX 128618501 128618661 -48355479 + AluJb SINE Alu 141 300 -12 233 119 24 0 chrX 128618662 128618704 -48355436 + GA-rich Low_complexity Low_complexity 2 44 0 2190 104 0 0 chrX 128618732 128619031 -48355109 - AluSx SINE Alu -13 299 1 1527 172 34 7 chrX 128619054 128619350 -48354790 - AluJo SINE Alu -8 304 1 21 0 0 0 chrX 128619350 128619371 -48354769 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chrX 128619468 128619506 -48354634 + AT_rich Low_complexity Low_complexity 1 38 0 352 228 126 92 chrX 128619522 128619847 -48354293 - L1M4 LINE L1 -1494 4652 4317 22 0 0 0 chrX 128619977 128619999 -48354141 + AT_rich Low_complexity Low_complexity 1 22 0 2218 94 0 3 chrX 128620009 128620317 -48353823 + AluSx SINE Alu 1 307 -5 2198 153 12 57 chrX 128620317 128620346 -48353794 - MER57A LTR ERV1 -13 390 361 1725 151 0 77 chrX 128620346 128620494 -48353646 + AluJo SINE Alu 1 113 -199 2013 108 0 14 chrX 128620494 128620838 -48353302 + AluSq SINE Alu 1 340 0 1725 151 0 77 chrX 128620838 128621013 -48353127 + AluJo SINE Alu 113 300 -12 2198 153 12 57 chrX 128621013 128621139 -48353001 - MER57A LTR ERV1 -42 361 231 2242 72 0 41 chrX 128621139 128621458 -48352682 + AluSc SINE Alu 1 306 -3 2198 153 12 57 chrX 128621458 128621708 -48352432 - MER57A LTR ERV1 -172 231 1 256 222 38 108 chrX 128621722 128621888 -48352252 - L1ME4a LINE L1 -3 6118 5942 2105 131 0 6 chrX 128621888 128622202 -48351938 - AluSq SINE Alu -1 312 1 1827 166 0 3 chrX 128622202 128622502 -48351638 - AluJb SINE Alu -9 303 4 256 222 38 108 chrX 128622502 128622519 -48351621 - L1ME4a LINE L1 -157 5964 5947 622 262 10 53 chrX 128623397 128623583 -48350557 + MIR SINE MIR 30 205 -57 1577 138 10 31 chrX 128623583 128623872 -48350268 + AluJo SINE Alu 21 303 -9 622 262 10 53 chrX 128623872 128623923 -48350217 + MIR SINE MIR 205 257 -5 2276 96 0 3 chrX 128624407 128624720 -48349420 + AluSx SINE Alu 1 312 0 1080 98 0 43 chrX 128624747 128624911 -48349229 - AluSg SINE Alu -153 157 1 478 291 40 54 chrX 128624924 128625060 -48349080 + L1ME4a LINE L1 5474 5610 -511 853 189 0 24 chrX 128625060 128625229 -48348911 + FRAM SINE Alu 2 166 0 478 291 40 54 chrX 128625229 128625442 -48348698 + L1ME4a LINE L1 5610 5818 -303 578 164 172 8 chrX 128625450 128625572 -48348568 + AluJb SINE Alu 148 289 -23 210 71 0 0 chrX 128625652 128625680 -48348460 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 261 18 72 chrX 128625684 128625795 -48348345 + L1ME4a LINE L1 5960 6064 -57 27 49 0 0 chrX 128625824 128625865 -48348275 + AT_rich Low_complexity Low_complexity 1 41 0 553 277 104 27 chrX 128626504 128626724 -48347416 - MIR SINE MIR -6 256 20 333 317 42 28 chrX 128626733 128626875 -48347265 - MIR3 SINE MIR -49 159 16 219 259 118 35 chrX 128627739 128627824 -48346316 - MIR SINE MIR -102 160 69 1760 113 78 17 chrX 128627890 128628183 -48345957 + AluSx SINE Alu 1 311 -1 2319 79 0 16 chrX 128628207 128628523 -48345617 - AluY SINE Alu 0 311 1 752 138 7 97 chrX 128629063 128629208 -48344932 - FLAM_A SINE Alu -1 132 1 1460 165 86 14 chrX 128629242 128629533 -48344607 - AluJo SINE Alu 0 312 1 1086 177 35 5 chrX 128629574 128629772 -48344368 + MER3 DNA MER1_type 1 204 -5 205 296 16 11 chrX 128630273 128630422 -48343718 - MIR3 SINE MIR -8 200 9 593 242 81 37 chrX 128631514 128631752 -48342388 + MIR SINE MIR 9 255 -7 2197 74 37 0 chrX 128632170 128632467 -48341673 + AluSc SINE Alu 1 308 -1 1721 145 29 23 chrX 128632500 128632810 -48341330 - AluJo SINE Alu 0 312 1 192 40 0 0 chrX 128632854 128632879 -48341261 + (A)n Simple_repeat Simple_repeat 1 25 0 304 243 14 14 chrX 128633243 128633313 -48340827 + MIR SINE MIR 93 162 -100 1898 129 3 19 chrX 128633387 128633696 -48340444 + AluJb SINE Alu 7 310 -2 663 273 11 6 chrX 128634656 128634832 -48339308 - L3 LINE CR1 -137 1440 1264 2130 105 0 3 chrX 128635091 128635385 -48338755 - AluSx SINE Alu -16 296 4 222 37 0 0 chrX 128635805 128635832 -48338308 + (CAGC)n Simple_repeat Simple_repeat 4 30 0 1808 149 0 32 chrX 128636487 128636796 -48337344 + AluJo SINE Alu 1 299 -13 860 153 122 41 chrX 128636935 128637071 -48337069 - AluJb SINE Alu -15 297 139 3920 118 8 47 chrX 128637071 128637731 -48336409 + MER51A LTR ERV1 1 634 0 860 153 122 41 chrX 128637731 128637790 -48336350 - AluJb SINE Alu -173 139 86 648 202 35 68 chrX 128638264 128638295 -48335845 - MIR SINE MIR -63 145 115 1567 118 91 27 chrX 128638295 128638600 -48335540 - AluSg SINE Alu 0 322 1 648 202 35 68 chrX 128638600 128638767 -48335373 - MIR SINE MIR -93 115 3 1090 121 181 25 chrX 128640088 128640287 -48333853 + MER30 DNA MER1_type 1 230 0 1613 156 0 48 chrX 128642105 128642394 -48331746 + AluJo SINE Alu 7 281 -31 1613 166 3 7 chrX 128642423 128642706 -48331434 + AluJo SINE Alu 1 282 -30 2135 119 0 0 chrX 128642734 128643036 -48331104 + AluSx SINE Alu 5 306 -6 2599 188 8 12 chrX 128643044 128643544 -48330596 + L1MB5 LINE L1 5646 6143 -31 2364 82 0 3 chrX 128643579 128643883 -48330257 - AluSq SINE Alu -10 303 1 591 313 77 0 chrX 128644010 128644218 -48329922 + MIR SINE MIR 12 235 -27 2558 52 0 0 chrX 128644273 128644580 -48329560 + AluY SINE Alu 1 307 -4 1352 131 131 12 chrX 128644846 128645116 -48329024 - AluSg1 SINE Alu 0 303 5 1499 180 3 50 chrX 128645528 128645851 -48328289 + AluJb SINE Alu 1 308 -4 1075 86 0 0 chrX 128645877 128646016 -48328124 - AluSg SINE Alu -171 139 1 215 170 0 43 chrX 128646414 128646461 -48327679 + GA-rich Low_complexity Low_complexity 1 45 0 199 167 83 21 chrX 128646964 128647012 -48327128 + MIR3 SINE MIR 142 192 -16 2211 101 0 3 chrX 128647207 128647513 -48326627 + AluSx SINE Alu 1 305 -7 1097 126 6 0 chrX 128647513 128647680 -48326460 + AluSg/x SINE Alu 132 299 -11 248 260 82 14 chrX 128648120 128648193 -48325947 + MIR SINE MIR 92 169 -93 377 224 163 0 chrX 128648451 128648549 -48325591 + L2 LINE L2 3199 3312 -1 401 276 29 0 chrX 128648756 128648861 -48325279 - MIR SINE MIR -126 136 29 1825 143 23 10 chrX 128648898 128649205 -48324935 - AluJb SINE Alu -1 311 1 208 339 49 27 chrX 128649853 128650036 -48324104 - L2 LINE L2 -575 2739 2553 3666 86 31 150 chrX 128650371 128651091 -48323049 - MER51A LTR ERV1 0 634 1 288 232 29 0 chrX 128651337 128651406 -48322734 + Charlie8 DNA MER1_type 72 142 -2275 1656 169 22 0 chrX 128651484 128651797 -48322343 + AluSx SINE Alu 1 319 0 392 240 16 58 chrX 128651920 128652041 -48322099 - L2 LINE L2 -190 3082 2967 933 118 147 49 chrX 128652167 128652371 -48321769 + AluJb SINE Alu 87 310 -2 812 144 25 0 chrX 128652389 128652507 -48321633 + AluJb SINE Alu 4 124 -188 198 303 0 15 chrX 128652533 128652599 -48321541 - L2 LINE L2 -606 2708 2644 417 123 0 0 chrX 128652657 128652722 -48321418 + (TCCCC)n Simple_repeat Simple_repeat 2 66 0 1463 184 58 0 chrX 128652722 128652999 -48321141 - AluJb SINE Alu -17 295 3 219 267 0 0 chrX 128653318 128653363 -48320777 + L2 LINE L2 3259 3303 -10 309 376 16 8 chrX 128653467 128653592 -48320548 + MIR SINE MIR 16 141 -67 2110 156 29 34 chrX 128653670 128654080 -48320060 + L1MB5 LINE L1 5767 6174 0 22 35 0 0 chrX 128654520 128654549 -48319591 + GC_rich Low_complexity Low_complexity 1 29 0 376 289 92 21 chrX 128655473 128655615 -48318525 + MIR3 SINE MIR 35 186 -22 202 279 29 0 chrX 128656411 128656515 -48317625 + (CAGAG)n Simple_repeat Simple_repeat 5 111 0 370 286 60 49 chrX 128660128 128660313 -48313827 - L2 LINE L2 -1 3312 3126 706 288 38 14 chrX 128661398 128661610 -48312530 - MIR SINE MIR -16 246 30 190 277 77 46 chrX 128661866 128661996 -48312144 - L2 LINE L2 -562 2752 2619 201 278 40 86 chrX 128662000 128662151 -48311989 + L2 LINE L2 2619 2762 -552 * 221 266 113 150 chrX 128662128 128662402 -48311738 + L2 LINE L2 3006 3269 -3 1135 129 11 6 chrX 128662538 128662716 -48311424 - AluSg/x SINE Alu 0 310 132 2034 113 31 0 chrX 128662716 128663007 -48311133 - AluSx SINE Alu -12 300 1 2118 84 25 0 chrX 128663140 128663426 -48310714 - AluSp SINE Alu -14 299 7 185 238 24 0 chrX 128664289 128664331 -48309809 + L3 LINE CR1 315 357 -1220 330 262 12 12 chrX 128664667 128664751 -48309389 + MER5B DNA MER1_type 34 117 -61 231 36 0 0 chrX 128664754 128664782 -48309358 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 1933 138 0 7 chrX 128664800 128665096 -48309044 - AluSx SINE Alu -18 294 1 2295 85 3 3 chrX 128665114 128665421 -48308719 - AluSg SINE Alu -3 307 1 229 88 0 0 chrX 128665422 128665456 -48308684 + L3 LINE CR1 1542 1575 -2 212 248 96 48 chrX 128665992 128666117 -48308023 - L2 LINE L2 -4 3268 3138 2289 78 20 0 chrX 128666488 128666784 -48307356 + AluSp SINE Alu 3 304 -9 22 70 0 0 chrX 128666924 128666967 -48307173 + AT_rich Low_complexity Low_complexity 1 43 0 1919 121 31 0 chrX 128667020 128667310 -48306830 - AluSx SINE Alu -13 299 1 2150 109 0 3 chrX 128667320 128667623 -48306517 - AluSg SINE Alu -8 302 1 1966 133 7 3 chrX 128667892 128668186 -48305954 + AluSx SINE Alu 1 295 -17 284 218 18 0 chrX 128668223 128668278 -48305862 + L2 LINE L2 3196 3251 -21 1784 176 71 6 chrX 128668354 128668678 -48305462 + MLT1A1 LTR MaLR 21 365 0 2238 103 3 0 chrX 128668957 128669267 -48304873 - AluSq SINE Alu -2 311 1 1050 290 113 29 chrX 128670407 128671151 -48302989 + L2 LINE L2 2512 3313 0 503 232 82 67 chrX 128671284 128671478 -48302662 - L2 LINE L2 0 3313 3117 3056 131 6 37 chrX 128671742 128671884 -48302256 - MER101 LTR ERV1 0 474 329 1823 140 31 0 chrX 128671884 128672170 -48301970 - AluSx SINE Alu -17 295 1 3056 131 6 37 chrX 128672170 128672516 -48301624 - MER101 LTR ERV1 -145 329 1 2094 118 3 3 chrX 128673099 128673403 -48300737 - AluSx SINE Alu -8 304 1 2006 114 0 10 chrX 128673813 128674110 -48300030 - AluSx SINE Alu -18 294 1 1645 185 10 0 chrX 128674303 128674611 -48299529 - AluJb SINE Alu -1 311 1 964 111 0 0 chrX 128674611 128674746 -48299394 - AluJb SINE Alu -177 135 1 2108 118 0 3 chrX 128676252 128676548 -48297592 - AluSx SINE Alu -17 295 1 24 0 0 0 chrX 128676548 128676572 -48297568 + AT_rich Low_complexity Low_complexity 1 24 0 275 284 81 0 chrX 128676655 128676729 -48297411 - MIR SINE MIR 0 262 183 411 344 74 25 chrX 128677570 128677610 -48296530 - L1ME4a LINE L1 -143 5978 5941 2018 111 3 0 chrX 128677610 128677898 -48296242 - AluSx SINE Alu -21 291 3 411 344 74 25 chrX 128677898 128678101 -48296039 - L1ME4a LINE L1 -180 5941 5723 2147 106 0 0 chrX 128679640 128679932 -48294208 - AluSx SINE Alu -14 298 7 468 282 61 55 chrX 128680964 128681145 -48292995 + MIR3 SINE MIR 19 200 -8 379 367 0 0 chrX 128682493 128682602 -48291538 - L2 LINE L2 0 3272 3164 1778 170 0 7 chrX 128682630 128682936 -48291204 + AluJb SINE Alu 1 304 -8 812 142 0 0 chrX 128682958 128683078 -48291062 + FAM SINE Alu 45 164 -21 1775 80 145 23 chrX 128683087 128683349 -48290791 + AluY SINE Alu 1 294 -7 283 272 120 40 chrX 128683353 128683478 -48290662 + L2 LINE L2 3122 3256 -16 314 275 63 28 chrX 128684292 128684434 -48289706 - L1MDa LINE L1 -4379 2161 2015 1050 170 0 0 chrX 128685635 128685800 -48288340 - FRAM SINE Alu -1 165 1 214 48 0 48 chrX 128685815 128685857 -48288283 + (TTTTTA)n Simple_repeat Simple_repeat 2 41 0 225 263 111 40 chrX 128686289 128686388 -48287752 + MIR SINE MIR 113 218 -44 4907 132 59 82 chrX 128687877 128688035 -48286105 - L1MC1 LINE L1 -60 6273 6113 1747 130 14 11 chrX 128688035 128688312 -48285828 - AluSx SINE Alu -21 291 14 4907 132 59 82 chrX 128688312 128689115 -48285025 - L1MC1 LINE L1 -220 6113 5293 2274 49 0 17 chrX 128689115 128689442 -48284698 - AluY SINE Alu 0 322 1 2294 73 13 3 chrX 128689442 128689742 -48284398 - AluY SINE Alu -8 303 1 4907 132 59 82 chrX 128689742 128689780 -48284360 - L1MC1 LINE L1 -1038 5295 5294 180 0 0 0 chrX 128691526 128691546 -48282594 + (TGGGGG)n Simple_repeat Simple_repeat 2 21 0 2005 117 0 0 chrX 128691553 128691834 -48282306 - AluSx SINE Alu -31 281 1 369 284 142 0 chrX 128692107 128692255 -48281885 - MIR SINE MIR -14 248 80 3015 184 72 10 chrX 128692305 128692902 -48281238 - L1MB5 LINE L1 -15 6159 5526 846 153 80 143 chrX 128693171 128693285 -48280855 + L1MB8 LINE L1 5899 6019 -159 2425 69 0 28 chrX 128693285 128693603 -48280537 - AluY SINE Alu 0 311 1 846 153 80 143 chrX 128693603 128693703 -48280437 + L1MB8 LINE L1 6019 6093 -85 1950 148 30 7 chrX 128693703 128694008 -48280132 + AluJb SINE Alu 1 312 0 846 153 80 143 chrX 128694008 128694079 -48280061 + L1MB8 LINE L1 6093 6167 -11 643 204 45 70 chrX 128694110 128694311 -48279829 + MIR SINE MIR 67 262 0 210 304 0 0 chrX 128695429 128695485 -48278655 + (CA)n Simple_repeat Simple_repeat 1 56 0 1228 157 14 18 chrX 128697756 128697979 -48276161 - L1MB8 LINE L1 -9 6169 5948 180 197 113 113 chrX 128698324 128698395 -48275745 + L2 LINE L2 3201 3271 -1 207 0 0 0 chrX 128698477 128698500 -48275640 + (TG)n Simple_repeat Simple_repeat 2 24 0 2250 94 34 0 chrX 128699640 128699937 -48274203 - AluSx SINE Alu -5 307 1 2187 98 0 3 chrX 128702943 128703229 -48270911 + AluSx SINE Alu 1 285 -27 753 165 25 70 chrX 128703749 128703907 -48270233 - FRAM SINE Alu -15 161 11 419 173 27 140 chrX 128703934 128704006 -48270134 - MER94 DNA DNA -1 133 85 1781 155 3 17 chrX 128704006 128704302 -48269838 - AluJo SINE Alu -20 292 1 419 173 27 140 chrX 128704302 128704379 -48269761 - MER94 DNA DNA -49 85 1 3602 102 134 33 chrX 128704650 128705226 -48268914 - MER51A LTR ERV1 0 634 1 390 315 99 0 chrX 128706439 128706550 -48267590 + L2 LINE L2 3145 3266 -6 430 151 21 54 chrX 128707531 128707624 -48266516 + L1MB7 LINE L1 5581 5670 -514 2512 165 14 31 chrX 128707734 128708219 -48265921 + L1MB7 LINE L1 5688 6164 -20 790 168 0 8 chrX 128708555 128708674 -48265466 + FLAM_C SINE Alu 4 121 -22 228 35 0 0 chrX 128708674 128708703 -48265437 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 217 279 0 16 chrX 128709590 128709651 -48264489 + CT-rich Low_complexity Low_complexity 1 60 0 1969 163 0 3 chrX 128709651 128709958 -48264182 - AluJo SINE Alu -6 306 1 207 100 0 0 chrX 128711325 128711355 -48262785 + (TTC)n Simple_repeat Simple_repeat 1 30 0 334 191 15 0 chrX 128713632 128713700 -48260440 + MER116 DNA Mariner 10 78 -2 478 291 16 0 chrX 128714081 128714208 -48259932 - MIR SINE MIR -74 188 60 1355 210 59 18 chrX 128714213 128714491 -48259649 + AluJo SINE Alu 2 294 -8 2074 135 7 0 chrX 128714491 128714787 -48259353 - AluSx SINE Alu -14 298 1 2129 151 128 10 chrX 128715094 128715345 -48258795 - MSTB1 LTR MaLR 0 432 119 2290 115 0 0 chrX 128715345 128715640 -48258500 + AluSx SINE Alu 2 296 -16 2129 151 128 10 chrX 128715640 128715772 -48258368 - MSTB1 LTR MaLR -313 119 4 2531 168 24 5 chrX 128715825 128716237 -48257903 - MSTB LTR MaLR -2 424 5 2672 10 0 0 chrX 128717021 128717348 -48256792 + AluYb8 SINE Alu 1 327 0 192 344 133 11 chrX 128719887 128719977 -48254163 + L2 LINE L2 3197 3297 -16 183 48 48 24 chrX 128721315 128721357 -48252783 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1725 148 0 4 chrX 128721387 128721644 -48252496 - AluJo SINE Alu -52 260 5 2010 128 7 7 chrX 128721970 128722267 -48251873 + AluJo SINE Alu 1 297 -15 216 0 0 0 chrX 128724608 128724632 -48249508 + (A)n Simple_repeat Simple_repeat 1 24 0 987 162 40 5 chrX 128724632 128724830 -48249310 - L1MC3 LINE L1 -6 7779 7575 * 1937 166 140 35 chrX 128724825 128725282 -48248858 - L1MB8 LINE L1 0 6178 5674 575 125 18 36 chrX 128725274 128725386 -48248754 - L1MC3 LINE L1 -187 7598 7489 * 2811 91 242 62 chrX 128725544 128726081 -48248059 + MER51A LTR ERV1 1 634 0 2230 146 50 11 chrX 128726081 128726444 -48247696 - MER57A LTR ERV1 -19 384 8 182 237 26 0 chrX 128726684 128726722 -48247418 - MIR SINE MIR -137 71 33 2533 74 3 0 chrX 128727366 128727740 -48246400 + AluSp SINE Alu 3 377 0 195 307 13 27 chrX 128728729 128728804 -48245336 - MER5A DNA MER1_type -14 175 102 2488 82 0 0 chrX 128729552 128729856 -48244284 + AluSx SINE Alu 1 304 -8 202 250 0 0 chrX 128730174 128730218 -48243922 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2074 147 0 0 chrX 128734770 128735069 -48239071 + AluJb SINE Alu 1 299 -13 2492 77 0 0 chrX 128735335 128735635 -48238505 - AluSx SINE Alu -11 301 2 300 53 0 0 chrX 128736406 128736444 -48237696 + (TG)n Simple_repeat Simple_repeat 2 39 0 554 264 66 36 chrX 128737141 128737308 -48236832 + MIR3 SINE MIR 30 201 -7 938 261 137 44 chrX 128738917 128739191 -48234949 + L1ME4a LINE L1 5547 5794 -327 2145 124 3 0 chrX 128739191 128739482 -48234658 + AluSx SINE Alu 2 293 -19 938 261 137 44 chrX 128739482 128739705 -48234435 + L1ME4a LINE L1 5794 6090 -31 242 111 79 32 chrX 128739783 128739846 -48234294 - L1ME4a LINE L1 0 6121 6056 2035 109 46 0 chrX 128740115 128740399 -48233741 - AluSx SINE Alu -15 297 1 263 28 28 0 chrX 128740905 128740941 -48233199 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1665 166 22 0 chrX 128740952 128741223 -48232917 - AluJo SINE Alu -35 277 1 201 241 0 37 chrX 128742611 128742665 -48231475 - L2 LINE L2 -18 3295 3244 * 311 271 28 37 chrX 128742646 128742753 -48231387 - MIR SINE MIR -91 171 66 450 0 0 0 chrX 128744202 128744252 -48229888 + (CA)n Simple_repeat Simple_repeat 2 51 0 312 218 46 11 chrX 128744947 128745034 -48229106 + L3 LINE CR1 1471 1560 -17 193 194 0 0 chrX 128745300 128745336 -48228804 - MER5A DNA MER1_type 0 189 154 699 132 9 0 chrX 128745453 128745567 -48228573 - MER5A DNA MER1_type -73 116 2 227 234 0 39 chrX 128745789 128745866 -48228274 + A-rich Low_complexity Low_complexity 5 78 0 210 37 0 0 chrX 128746574 128746601 -48227539 + (TC)n Simple_repeat Simple_repeat 1 27 0 192 40 0 0 chrX 128746600 128746625 -48227515 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 192 77 0 0 chrX 128747312 128747338 -48226802 + (T)n Simple_repeat Simple_repeat 1 26 0 1943 135 0 26 chrX 128748388 128748692 -48225448 - AluSx SINE Alu -16 296 1 294 152 65 87 chrX 128749223 128749315 -48224825 + MER94 DNA DNA 1 90 -44 659 112 20 0 chrX 128749318 128749416 -48224724 - AluSg/x SINE Alu -17 292 193 2262 92 20 0 chrX 128749432 128749726 -48224414 - AluSx SINE Alu -12 300 1 1146 129 8 27 chrX 128750820 128751143 -48222997 - AluJo SINE Alu -7 305 21 2385 99 10 0 chrX 128751242 128751544 -48222596 - AluSp SINE Alu -8 305 1 23 0 0 0 chrX 128751851 128751874 -48222266 + AT_rich Low_complexity Low_complexity 1 23 0 2343 107 3 3 chrX 128752417 128752727 -48221413 - AluJo SINE Alu -2 310 1 946 264 47 0 chrX 128755489 128755724 -48218416 + MIR SINE MIR 6 251 -11 1269 179 8 0 chrX 128756595 128756829 -48217311 + MER46A DNA MER2_type 1 236 0 290 167 0 0 chrX 128757794 128757842 -48216298 + L2 LINE L2 3256 3303 -10 387 264 0 47 chrX 128758145 128758274 -48215866 + MIR3 SINE MIR 86 208 0 258 40 100 0 chrX 128759181 128759231 -48214909 + CT-rich Low_complexity Low_complexity 4 58 0 2337 112 0 0 chrX 128759236 128759539 -48214601 - AluSg SINE Alu -6 304 2 741 211 7 20 chrX 128760886 128761033 -48213107 - FRAM SINE Alu -21 155 11 225 191 0 21 chrX 128762861 128762908 -48211232 + CT-rich Low_complexity Low_complexity 2 47 0 213 39 0 0 chrX 128764076 128764102 -48210038 + (TTG)n Simple_repeat Simple_repeat 2 27 0 296 275 77 11 chrX 128766348 128766439 -48207701 - L2 LINE L2 -8 3264 3168 21 0 0 0 chrX 128767425 128767446 -48206694 + AT_rich Low_complexity Low_complexity 1 21 0 2227 107 0 23 chrX 128767569 128767877 -48206263 - AluY SINE Alu -10 301 1 486 0 0 0 chrX 128767931 128767985 -48206155 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 320 213 33 0 chrX 128767988 128768049 -48206091 - AluSc SINE Alu -23 276 214 1630 145 0 0 chrX 128768064 128768292 -48205848 - AluSx SINE Alu -57 255 28 292 29 0 0 chrX 128768457 128768491 -48205649 + AluY SINE Alu 17 50 -251 21 0 0 0 chrX 128769570 128769591 -48204549 + AT_rich Low_complexity Low_complexity 1 21 0 434 57 0 0 chrX 128771853 128771906 -48202234 + MADE1 DNA Mariner 1 53 -27 204 40 0 0 chrX 128771932 128771957 -48202183 + (TG)n Simple_repeat Simple_repeat 1 25 0 2010 127 6 25 chrX 128772473 128772815 -48201325 - AluSx SINE Alu 0 312 5 1661 194 3 3 chrX 128773281 128773570 -48200570 - AluJo SINE Alu -23 289 1 381 43 0 0 chrX 128774131 128774178 -48199962 + (TG)n Simple_repeat Simple_repeat 2 48 0 2280 118 0 0 chrX 128774813 128775119 -48199021 + AluSx SINE Alu 1 306 -6 204 286 33 33 chrX 128775204 128775295 -48198845 - MIR SINE MIR -119 143 53 296 0 51 0 chrX 128775657 128775696 -48198444 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 2033 114 0 7 chrX 128775706 128775986 -48198154 - AluSx SINE Alu -34 278 1 2291 116 0 0 chrX 128776870 128777172 -48196968 + AluSx SINE Alu 1 302 -10 1000 231 150 50 chrX 128780190 128780475 -48193665 + MSTD LTR MaLR 2 332 -64 2082 134 6 29 chrX 128780475 128780788 -48193352 - AluJb SINE Alu -6 306 1 1000 231 150 50 chrX 128780788 128780861 -48193279 + MSTD LTR MaLR 332 396 0 515 292 8 8 chrX 128780987 128781117 -48193023 - L2 LINE L2 -7 3265 3136 2256 107 0 13 chrX 128781156 128781456 -48192684 + AluSx SINE Alu 1 296 -16 737 171 62 7 chrX 128781564 128781710 -48192430 - MER5A DNA MER1_type -35 154 1 2277 114 0 0 chrX 128781992 128782291 -48191849 + AluSx SINE Alu 1 299 -13 1169 236 143 45 chrX 128782535 128783094 -48191046 - MLT1L LTR MaLR -1 614 1 1563 165 49 25 chrX 128783344 128783629 -48190511 - AluJb SINE Alu -10 302 11 477 258 40 0 chrX 128783666 128783790 -48190350 - L3 LINE CR1 -78 1499 1371 2077 148 0 0 chrX 128784682 128784979 -48189161 - AluSx SINE Alu -15 297 1 819 159 8 0 chrX 128785305 128785437 -48188703 + AluJo/FLAM SINE Alu 1 133 -179 1596 157 13 60 chrX 128785440 128785740 -48188400 + AluJo SINE Alu 1 286 -26 252 0 0 0 chrX 128785744 128785772 -48188368 + (CAT)n Simple_repeat Simple_repeat 2 29 0 327 212 62 35 chrX 128785877 128785990 -48188150 - MARNA DNA Mariner -173 413 298 337 310 33 45 chrX 128786101 128786343 -48187797 - MARNA DNA Mariner -330 256 18 32575 109 9 51 chrX 128786767 128793192 -48180948 - L1PA7 LINE L1 0 6154 9 1639 173 26 0 chrX 128793198 128793469 -48180671 - AluJb SINE Alu -11 301 24 642 241 35 26 chrX 128793498 128793704 -48180436 - MIR SINE MIR -25 237 32 454 242 20 0 chrX 128793764 128793863 -48180277 - MER5A DNA MER1_type -80 109 9 2528 110 31 14 chrX 128794271 128794627 -48179513 - THE1B LTR MaLR -2 362 1 1803 164 3 7 chrX 128795414 128795706 -48178434 + AluJo SINE Alu 1 291 -21 566 224 0 0 chrX 128797527 128797643 -48176497 + L1PB4 LINE L1 6034 6149 -7 204 231 0 0 chrX 128798208 128798247 -48175893 + GA-rich Low_complexity Low_complexity 2 40 0 300 307 104 40 chrX 128799162 128799413 -48174727 - L3 LINE CR1 -852 725 459 550 210 119 68 chrX 128799538 128799757 -48174383 - MER93b LTR ERV1 0 373 144 1053 96 37 0 chrX 128799817 128799952 -48174188 - AluSg SINE Alu -170 140 1 1948 151 0 13 chrX 128799956 128800261 -48173879 - AluJb SINE Alu -11 301 1 298 364 0 0 chrX 128800719 128800818 -48173322 - L3 LINE CR1 -1273 304 206 361 264 24 40 chrX 128801590 128801715 -48172425 + L2 LINE L2 3150 3272 0 236 275 143 11 chrX 128801896 128801987 -48172153 + L2 LINE L2 3160 3262 -10 * 356 369 25 6 chrX 128801985 128802145 -48171995 + MIR3 SINE MIR 37 199 -9 1729 161 9 9 chrX 128804085 128804407 -48169733 - MER33 DNA MER1_type 0 324 3 279 79 0 0 chrX 128804567 128804605 -48169535 + (CAGG)n Simple_repeat Simple_repeat 1 38 0 1846 124 32 14 chrX 128804786 128804915 -48169225 + AluSx SINE Alu 1 126 -186 2480 74 0 0 chrX 128804915 128805211 -48168929 + AluY SINE Alu 1 296 -15 1846 124 32 14 chrX 128805211 128805363 -48168777 + AluSx SINE Alu 126 287 -25 476 100 0 33 chrX 128805371 128805461 -48168679 + SVA Other Other 517 603 -783 234 91 0 0 chrX 128805739 128805772 -48168368 + (T)n Simple_repeat Simple_repeat 1 33 0 313 252 92 17 chrX 128805835 128805954 -48168186 - L1ME4a LINE L1 -18 6103 5976 696 211 0 0 chrX 128806899 128807032 -48167108 - FLAM_A SINE Alu 0 133 1 23 33 0 0 chrX 128807053 128807083 -48167057 + AT_rich Low_complexity Low_complexity 1 30 0 198 103 0 0 chrX 128807215 128807244 -48166896 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1846 155 0 0 chrX 128807249 128807527 -48166613 - AluJo SINE Alu -34 278 1 1685 172 42 7 chrX 128807552 128807837 -48166303 + AluJo SINE Alu 1 295 -17 666 278 43 4 chrX 128807838 128808072 -48166068 - MIR SINE MIR 0 262 20 315 85 0 0 chrX 128808181 128808228 -48165912 + (TG)n Simple_repeat Simple_repeat 2 48 0 2157 118 38 44 chrX 128808504 128808830 -48165310 + THE1B LTR MaLR 1 326 -38 2381 97 3 0 chrX 128808830 128809130 -48165010 - AluSq SINE Alu -12 301 1 2157 118 38 44 chrX 128809130 128809169 -48164971 + THE1B LTR MaLR 326 364 0 1613 152 53 11 chrX 128809259 128809522 -48164618 + AluJb SINE Alu 1 274 -38 342 67 0 0 chrX 128809523 128809568 -48164572 + (GA)n Simple_repeat Simple_repeat 2 46 0 2357 173 62 39 chrX 128809937 128810424 -48163716 - MLT1D LTR MaLR -5 500 3 243 269 69 46 chrX 128810729 128810859 -48163281 - L2 LINE L2 -41 3272 3140 1333 167 18 5 chrX 128810979 128811201 -48162939 - AluSg/x SINE Alu -3 309 85 858 224 104 0 chrX 128811226 128811418 -48162722 - MIR SINE MIR -48 214 3 4486 159 29 63 chrX 128812823 128813922 -48160218 - L1MB2 LINE L1 -2 6169 5109 234 81 0 0 chrX 128813922 128813959 -48160181 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 3163 179 41 48 chrX 128813966 128814442 -48159698 - L1MB2 LINE L1 -1821 4325 3847 659 198 0 8 chrX 128814442 128814563 -48159577 - FLAM_A SINE Alu -13 120 1 3163 179 41 48 chrX 128814563 128814609 -48159531 - L1MB2 LINE L1 -2299 3847 3802 2441 142 49 10 chrX 128814609 128815018 -48159122 - MSTA LTR MaLR 0 428 4 3163 179 41 48 chrX 128815018 128815219 -48158921 - L1MB2 LINE L1 -2344 3802 3606 462 305 108 4 chrX 128815487 128815736 -48158404 - L2 LINE L2 -55 3258 2984 195 42 0 0 chrX 128815752 128815776 -48158364 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2177 122 135 13 chrX 128815880 128816258 -48157882 - MSTB LTR MaLR 0 426 3 300 270 178 7 chrX 128817209 128817361 -48156779 + MIR3 SINE MIR 30 207 -1 441 0 0 0 chrX 128818158 128818207 -48155933 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 2464 91 0 0 chrX 128818237 128818545 -48155595 - AluSx SINE Alu -4 308 1 993 106 0 34 chrX 128819360 128819539 -48154601 + (TCCCC)n Simple_repeat Simple_repeat 4 176 0 524 225 12 12 chrX 128819589 128819762 -48154378 + CT-rich Low_complexity Low_complexity 4 176 0 1588 185 0 28 chrX 128819763 128820050 -48154090 - AluJo SINE Alu -33 279 1 787 168 8 0 chrX 128820053 128820184 -48153956 - AluJo/FLAM SINE Alu -180 132 1 1547 68 43 60 chrX 128821638 128821872 -48152268 + MER30 DNA MER1_type 1 230 0 4079 149 44 20 chrX 128822649 128823359 -48150781 - LTR8A LTR ERV1 0 727 1 3554 138 4 15 chrX 128824298 128824835 -48149305 - MER61E LTR ERV1 -38 531 1 1738 175 3 29 chrX 128825824 128826133 -48148007 + AluJo SINE Alu 1 301 -11 1956 135 7 7 chrX 128826553 128826842 -48147298 - AluJb SINE Alu -23 289 1 28 0 0 0 chrX 128827403 128827431 -48146709 + AT_rich Low_complexity Low_complexity 1 28 0 349 318 56 0 chrX 128827605 128827712 -48146428 - MIR SINE MIR -63 145 33 1920 138 0 42 chrX 128828740 128829052 -48145088 + AluJo SINE Alu 1 299 -13 1808 95 108 182 chrX 128829694 128829950 -48144190 + MSTA LTR MaLR 1 274 -154 261 0 0 0 chrX 128829950 128829979 -48144161 + (TC)n Simple_repeat Simple_repeat 2 30 0 1007 138 11 0 chrX 128829981 128830155 -48143985 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 1808 95 108 182 chrX 128830155 128830357 -48143783 + MSTA LTR MaLR 275 428 0 300 232 152 32 chrX 128830660 128830785 -48143355 + MIR SINE MIR 119 258 -4 282 216 0 0 chrX 128831131 128831182 -48142958 + L1ME4a LINE L1 5988 6038 -83 31 68 0 0 chrX 128831187 128831246 -48142894 + AT_rich Low_complexity Low_complexity 1 59 0 2136 127 0 3 chrX 128831535 128831826 -48142314 + AluJb SINE Alu 3 292 -20 387 214 0 60 chrX 128832538 128832577 -48141563 - L2 LINE L2 -15 3298 3258 2465 101 62 8 chrX 128832577 128832933 -48141207 + THE1C LTR MaLR 1 375 0 387 214 0 60 chrX 128832933 128833010 -48141130 - L2 LINE L2 -55 3258 3189 1075 123 18 6 chrX 128833102 128833265 -48140875 + U1 snRNA snRNA 1 165 0 180 77 0 0 chrX 128833751 128833777 -48140363 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1778 188 0 3 chrX 128833783 128834071 -48140069 - AluJo SINE Alu -25 287 1 228 35 0 0 chrX 128834215 128834244 -48139896 + (TG)n Simple_repeat Simple_repeat 2 30 0 810 218 6 11 chrX 128835336 128835515 -48138625 + MER5B DNA MER1_type 1 178 0 553 236 185 13 chrX 128835542 128835699 -48138441 - MER5A DNA MER1_type -1 188 5 1840 181 7 0 chrX 128836027 128836337 -48137803 + AluJo SINE Alu 1 312 0 226 297 44 2 chrX 128836783 128836869 -48137271 + MIR SINE MIR 4 92 -116 202 329 0 14 chrX 128837518 128837591 -48136549 + MIR SINE MIR 11 82 -180 351 191 0 85 chrX 128837777 128837871 -48136269 + MIR SINE MIR 73 158 -104 883 204 24 0 chrX 128837875 128838042 -48136098 + AluSg/x SINE Alu 132 302 -8 267 244 39 39 chrX 128838045 128838123 -48136017 + MIR SINE MIR 159 236 -26 932 239 55 47 chrX 128838179 128838559 -48135581 - L2 LINE L2 -42 3271 2889 817 184 6 6 chrX 128839925 128840104 -48134036 + CT-rich Low_complexity Low_complexity 2 180 0 280 178 0 0 chrX 128840104 128840149 -48133991 + polypyrimidine Low_complexity Low_complexity 1 45 -305 1758 142 7 25 chrX 128840149 128840431 -48133709 - AluJo SINE Alu -34 278 2 280 178 0 0 chrX 128840431 128840454 -48133686 + polypyrimidine Low_complexity Low_complexity 44 350 0 3006 148 21 40 chrX 128840644 128841165 -48132975 + L1MA9 LINE L1 5743 6253 -59 2198 138 0 3 chrX 128841165 128841469 -48132671 + AluSx SINE Alu 1 303 -9 3006 148 21 40 chrX 128841469 128841528 -48132612 + L1MA9 LINE L1 6253 6312 0 567 225 133 29 chrX 128841540 128841713 -48132427 - MIR SINE MIR -5 257 67 390 258 25 57 chrX 128841753 128841912 -48132228 + MIR SINE MIR 103 256 -6 200 310 23 23 chrX 128842616 128842703 -48131437 + L2 LINE L2 2694 2780 -534 309 289 0 66 chrX 128842760 128842881 -48131259 - L2 LINE L2 0 3313 3201 1179 249 39 48 chrX 128843523 128844110 -48130030 - MER115 DNA AcHobo 0 693 39 218 352 80 0 chrX 128844114 128844202 -48129938 - L2 LINE L2 -52 3220 3126 1230 208 76 26 chrX 128844467 128844809 -48129331 - L1ME3A LINE L1 -160 6010 5652 229 172 121 0 chrX 128844815 128844873 -48129267 - L1MC4 LINE L1 -1 8041 7977 2607 80 14 22 chrX 128844876 128845237 -48128903 + L1PA10 LINE L1 5800 6157 -11 1980 75 0 4 chrX 128845239 128845479 -48128661 + AluSq SINE Alu 1 239 -74 29 28 0 0 chrX 128845500 128845536 -48128604 + AT_rich Low_complexity Low_complexity 1 36 0 1097 107 6 19 chrX 128846181 128846340 -48127800 - FRAM SINE Alu -19 157 1 190 349 57 9 chrX 128847198 128847304 -48126836 + MIR SINE MIR 30 140 -68 763 344 18 18 chrX 128847514 128847840 -48126300 - L3 LINE CR1 -22 1555 1230 2016 144 7 0 chrX 128847877 128848162 -48125978 - AluSx SINE Alu -23 289 3 322 227 0 0 chrX 128848565 128848640 -48125500 - MIR SINE MIR -120 142 68 327 241 23 11 chrX 128848856 128848943 -48125197 - L1M3c LINE L1 -6050 91 4 908 206 22 11 chrX 128848996 128849176 -48124964 + MER58A DNA MER1_type 43 224 0 * 1546 174 106 17 chrX 128849176 128849579 -48124561 + Zaphod DNA AcHobo 3589 4027 -4 1243 246 21 52 chrX 128849761 128850147 -48123993 + MLT1A2 LTR MaLR 1 374 0 2556 190 73 0 chrX 128850147 128850720 -48123420 + MLT1A2-int LTR MaLR 1 732 -639 354 218 46 0 chrX 128850842 128850929 -48123211 + MLT1A2-int LTR MaLR 677 767 -968 2404 164 78 11 chrX 128851065 128851511 -48122629 + MLT1A2-int LTR MaLR 1255 1730 -5 1563 184 79 35 chrX 128851515 128851858 -48122282 + MER31B LTR ERV1 6 363 -103 1130 97 0 55 chrX 128851878 128852043 -48122097 + AluSg/x SINE Alu 134 289 -21 283 222 25 0 chrX 128852067 128852148 -48121992 + MER67B LTR ERV1 579 661 0 337 108 0 108 chrX 128852150 128852215 -48121925 + MLT1B LTR MaLR 1 58 -332 1830 175 32 24 chrX 128852261 128852632 -48121508 + MLT1A2 LTR MaLR 1 374 0 556 123 0 12 chrX 128853204 128853285 -48120855 + MSTD LTR MaLR 1 80 -316 379 156 66 0 chrX 128853444 128853566 -48120574 + (CACGT)n Simple_repeat Simple_repeat 1 130 0 1137 203 130 43 chrX 128855421 128855722 -48118418 + MSTD LTR MaLR 70 396 0 360 128 11 16 chrX 128856086 128856154 -48117986 + L1M3 LINE L1 5408 5474 -709 1583 160 31 35 chrX 128856162 128856449 -48117691 - AluJb SINE Alu -26 286 1 1831 173 31 17 chrX 128856450 128856802 -48117338 - L1MB4 LINE L1 -289 5891 5535 365 254 82 15 chrX 128857490 128857624 -48116516 + MIR3 SINE MIR 53 195 -13 207 0 0 0 chrX 128858348 128858371 -48115769 + (GA)n Simple_repeat Simple_repeat 2 24 0 1344 171 110 8 chrX 128858709 128858973 -48115167 - AluJo SINE Alu -21 291 1 275 229 0 12 chrX 128859024 128859107 -48115033 + C-rich Low_complexity Low_complexity 1 82 0 1779 150 4 7 chrX 128859132 128859405 -48114735 - AluSx SINE Alu -40 272 1 913 138 0 8 chrX 128859421 128859551 -48114589 - AluSq/x SINE Alu -183 129 1 2277 113 0 3 chrX 128859575 128859886 -48114254 - AluSx SINE Alu -2 310 1 30 0 0 0 chrX 128859899 128859929 -48114211 + AT_rich Low_complexity Low_complexity 1 30 0 295 333 9 0 chrX 128860709 128860823 -48113317 - MIR SINE MIR -67 141 27 2161 115 3 34 chrX 128860942 128861264 -48112876 - AluSx SINE Alu 0 312 1 785 176 0 7 chrX 128861410 128861546 -48112594 - AluJb SINE Alu -90 222 88 239 125 36 36 chrX 128861618 128861674 -48112466 - L1M4 LINE L1 -458 5716 5661 1172 136 0 0 chrX 128861674 128861829 -48112311 + AluJb SINE Alu 135 289 -23 401 164 15 0 chrX 128861853 128861920 -48112220 - L1M4 LINE L1 -533 5651 5584 669 155 39 71 chrX 128862156 128862311 -48111829 + MER3 DNA MER1_type 47 196 -13 267 281 37 104 chrX 128862545 128862680 -48111460 - L2 LINE L2 0 3272 3147 456 307 22 0 chrX 128862716 128862853 -48111287 - MIR SINE MIR 0 262 123 902 236 21 57 chrX 128863048 128863379 -48110761 + L1ME4a LINE L1 5596 5914 -207 630 251 117 43 chrX 128864225 128864456 -48109684 + MIR SINE MIR 3 250 -12 399 254 77 15 chrX 128864502 128864632 -48109508 + L2 LINE L2 3172 3309 -4 312 312 48 26 chrX 128864761 128864950 -48109190 + MIR SINE MIR 20 212 -50 1436 103 75 0 chrX 128865208 128865422 -48108718 + MER30 DNA MER1_type 1 230 0 1288 110 5 11 chrX 128865757 128865948 -48108192 + MER4D LTR ERV1 259 448 -455 1606 119 25 8 chrX 128865948 128866191 -48107949 - AluJb SINE Alu -7 305 59 2231 87 17 0 chrX 128866222 128866521 -48107619 + AluY SINE Alu 1 304 -7 2277 120 0 0 chrX 128866712 128867021 -48107119 - AluSx SINE Alu -3 309 1 333 247 52 0 chrX 128867611 128867688 -48106452 + MER91A DNA MER1_type 1 81 -115 322 333 85 8 chrX 128867859 128868117 -48106023 + L2 LINE L2 2454 2731 -583 503 354 34 48 chrX 128868242 128868595 -48105545 + L2 LINE L2 2925 3272 0 4683 172 16 23 chrX 128869368 128869746 -48104394 + L1MB7 LINE L1 5116 5495 -689 2408 100 3 0 chrX 128869746 128870055 -48104085 + AluSq SINE Alu 1 310 -3 4683 172 16 23 chrX 128870055 128870295 -48103845 + L1MB7 LINE L1 5495 5735 -449 2112 120 33 7 chrX 128870295 128870594 -48103546 + AluSx SINE Alu 1 307 -5 4683 172 16 23 chrX 128870594 128871052 -48103088 + L1MB7 LINE L1 5735 6184 0 2645 32 0 23 chrX 128871147 128871456 -48102684 - AluY SINE Alu -9 302 1 22 0 0 73 chrX 128871547 128871588 -48102552 + AT_rich Low_complexity Low_complexity 1 38 0 6705 67 21 1 chrX 128871766 128872999 -48101141 + L1PA14 LINE L1 4906 6158 -3 913 150 0 0 chrX 128873111 128873238 -48100902 + FLAM_C SINE Alu 1 127 -16 351 167 0 0 chrX 128873400 128873454 -48100686 - MLT1A1 LTR MaLR 0 365 312 1223 201 4 12 chrX 128873461 128873710 -48100430 - AluJo SINE Alu -3 309 63 861 179 34 102 chrX 128873712 128873981 -48100159 - MLT1A1 LTR MaLR -44 321 69 1700 178 3 7 chrX 128873981 128874273 -48099867 - AluJo SINE Alu -21 291 1 861 179 34 102 chrX 128874273 128874288 -48099852 - MLT1A1 LTR MaLR -296 69 55 385 279 122 52 chrX 128874587 128874874 -48099266 - L1M4 LINE L1 -1773 4373 4067 1647 176 65 7 chrX 128875010 128875300 -48098840 - AluJb SINE Alu -5 307 1 734 242 29 29 chrX 128875351 128875595 -48098545 + L2 LINE L2 3061 3304 -9 2035 148 7 3 chrX 128875662 128875967 -48098173 + AluJb SINE Alu 1 306 -6 238 267 59 59 chrX 128876023 128876210 -48097930 - L1M4 LINE L1 -2382 3764 3578 202 274 128 69 chrX 128876438 128876518 -48097622 - L2 LINE L2 0 3313 3239 1395 191 88 4 chrX 128876518 128876811 -48097329 + AluJo SINE Alu 1 315 0 202 274 128 69 chrX 128876811 128876851 -48097289 - L2 LINE L2 -74 3239 3203 1547 213 41 60 chrX 128876851 128877382 -48096758 + LTR33 LTR ERVL 1 521 0 202 274 128 69 chrX 128877382 128877463 -48096677 - L2 LINE L2 -110 3203 3098 241 264 66 80 chrX 128877532 128877683 -48096457 - L1M4 LINE L1 -2870 3276 3124 1910 148 0 13 chrX 128877683 128877981 -48096159 - AluJb SINE Alu -18 294 1 241 264 66 80 chrX 128877981 128878345 -48095795 - L1M4 LINE L1 -3022 3124 2768 2100 134 0 10 chrX 128878498 128878797 -48095343 - AluSx SINE Alu -16 296 1 1406 209 35 14 chrX 128878866 128879148 -48094992 - AluJo SINE Alu -24 288 1 451 203 0 0 chrX 128879170 128879249 -48094891 - AluJ/FLAM SINE Alu -232 80 2 2422 82 0 3 chrX 128881446 128881750 -48092390 + AluSq SINE Alu 1 303 -10 1996 167 0 0 chrX 128881814 128882126 -48092014 + AluJo SINE Alu 1 312 0 1360 121 32 89 chrX 128883334 128883582 -48090558 - AluJo SINE Alu -18 294 61 713 136 10 0 chrX 128883584 128883687 -48090453 - AluJb SINE Alu -207 105 2 1988 121 46 0 chrX 128884323 128884484 -48089656 - AluSx SINE Alu -15 297 116 333 0 0 0 chrX 128884484 128884521 -48089619 + (TG)n Simple_repeat Simple_repeat 2 38 0 1988 121 46 0 chrX 128884521 128884641 -48089499 - AluSx SINE Alu -196 116 3 543 267 35 54 chrX 128885191 128885449 -48088691 + MIR SINE MIR 9 261 -1 206 260 55 16 chrX 128885554 128885681 -48088459 + CT-rich Low_complexity Low_complexity 6 137 0 711 261 72 0 chrX 128885806 128885986 -48088154 - MIR SINE MIR -48 214 22 2309 135 6 3 chrX 128886362 128886702 -48087438 - MER61A LTR ERV1 -2 341 1 204 279 39 93 chrX 128886825 128886879 -48087261 + MIR SINE MIR 120 175 -87 3199 107 73 22 chrX 128886879 128887384 -48086756 - LTR26B LTR ERV1 0 531 1 204 279 39 93 chrX 128887384 128887458 -48086682 + MIR SINE MIR 175 241 -21 280 216 10 88 chrX 128887685 128887787 -48086353 + MIR3 SINE MIR 83 176 -32 1423 163 4 21 chrX 128888328 128888561 -48085579 - AluJo SINE Alu -83 229 1 1303 211 71 19 chrX 128888593 128888916 -48085224 + MER58B DNA MER1_type 1 340 -1 2239 108 3 0 chrX 128889085 128889380 -48084760 + AluSx SINE Alu 1 296 -16 596 312 55 13 chrX 128890165 128890402 -48083738 - MIR SINE MIR -2 260 14 1715 159 130 109 chrX 128890922 128891205 -48082935 - LTR49 LTR ERV1 -31 564 289 2463 140 31 17 chrX 128891205 128891626 -48082514 - MSTA LTR MaLR 0 428 2 1715 159 130 109 chrX 128891626 128891894 -48082246 - LTR49 LTR ERV1 -306 289 1 503 266 101 46 chrX 128891947 128892165 -48081975 - MIR SINE MIR -14 248 19 2546 127 49 54 chrX 128892189 128892655 -48081485 + MER88 LTR ERVL 1 464 0 326 257 193 50 chrX 128893167 128893385 -48080755 + MIR SINE MIR 8 256 -6 221 179 0 0 chrX 128893354 128893393 -48080747 + L2 LINE L2 3271 3309 -4 * 249 271 94 0 chrX 128893537 128893622 -48080518 - L1ME LINE L1 -303 5818 5726 267 54 0 0 chrX 128893634 128893671 -48080469 + (TG)n Simple_repeat Simple_repeat 2 38 0 792 260 94 39 chrX 128893965 128894296 -48079844 + LTR33 LTR ERVL 155 503 -18 863 114 16 8 chrX 128896252 128896375 -48077765 - FRAM SINE Alu -20 156 33 383 296 0 0 chrX 128898242 128898330 -48075810 - L2 LINE L2 0 3272 3185 230 91 273 0 chrX 128898685 128898740 -48075400 + AluJ/FRAM SINE Alu 228 297 -5 542 291 121 19 chrX 128899054 128899260 -48074880 + L2 LINE L2 2745 2971 -343 2492 126 48 3 chrX 128900568 128900748 -48073392 + MLT1B LTR MaLR 1 171 -219 192 40 0 0 chrX 128900748 128900773 -48073367 + (CA)n Simple_repeat Simple_repeat 2 26 0 2492 126 48 3 chrX 128900773 128900965 -48073175 + MLT1B LTR MaLR 171 390 0 401 273 28 7 chrX 128901288 128901431 -48072709 - L2 LINE L2 -1619 1695 1550 3322 157 105 27 chrX 128901486 128902160 -48071980 - LTR8A LTR ERV1 0 727 1 2642 247 43 48 chrX 128902161 128902350 -48071790 - L2 LINE L2 -1805 1509 1320 2656 112 28 14 chrX 128902350 128902707 -48071433 + THE1B LTR MaLR 1 362 -2 2642 247 43 48 chrX 128902707 128903329 -48070811 - L2 LINE L2 -1994 1320 696 1513 178 22 22 chrX 128903329 128903599 -48070541 + AluJb SINE Alu 1 270 -42 309 26 0 0 chrX 128903605 128903643 -48070497 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2642 247 43 48 chrX 128903643 128903713 -48070427 - L2 LINE L2 -2623 691 625 203 233 0 0 chrX 128905099 128905142 -48068998 + MIR3 SINE MIR 162 204 -4 206 31 0 31 chrX 128905294 128905326 -48068814 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 33235 99 10 55 chrX 128905327 128906282 -48067858 - L1PA7 LINE L1 -17 6137 5141 9740 41 1 0 chrX 128906282 128907351 -48066789 + MER11C LTR ERVK 1 1070 -1 33235 99 10 55 chrX 128907351 128910230 -48063910 - L1PA7 LINE L1 -1013 5141 2135 240 35 0 0 chrX 128910230 128910259 -48063881 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 33235 99 10 55 chrX 128910259 128912040 -48062100 - L1PA7 LINE L1 -4019 2135 848 2443 76 7 3 chrX 128912040 128912344 -48061796 - AluY SINE Alu -6 305 1 33235 99 10 55 chrX 128912344 128913146 -48060994 - L1PA7 LINE L1 -5306 848 12 1642 210 22 12 chrX 128913289 128913871 -48060269 + L1M4c LINE L1 1663 2338 -4046 10793 215 25 42 chrX 128913881 128914953 -48059187 + L1M4c LINE L1 2439 3527 -2855 1818 158 14 17 chrX 128914953 128915245 -48058895 + AluJb SINE Alu 1 291 -21 10793 215 25 42 chrX 128915245 128915257 -48058883 + L1M4c LINE L1 3527 3538 -2844 1483 61 22 0 chrX 128915257 128915437 -48058703 + L1PA6 LINE L1 5968 6151 -3 10793 215 25 42 chrX 128915437 128916170 -48057970 + L1M4c LINE L1 3538 4282 -2100 1771 176 0 20 chrX 128916170 128916472 -48057668 + AluJb SINE Alu 1 296 -16 10793 215 25 42 chrX 128916472 128917167 -48056973 + L1M4c LINE L1 4282 4987 -1395 2054 152 3 13 chrX 128917167 128917482 -48056658 + AluJb SINE Alu 1 312 0 10793 215 25 42 chrX 128917482 128917678 -48056462 + L1M4c LINE L1 4987 5102 -1280 2634 107 31 6 chrX 128917678 128918033 -48056107 - THE1B LTR MaLR 0 364 1 10793 215 25 42 chrX 128918033 128918189 -48055951 + L1M4c LINE L1 5102 5259 -1123 406 297 68 14 chrX 128918343 128918491 -48055649 + MER5B DNA MER1_type 17 172 -6 267 250 0 0 chrX 128918540 128918592 -48055548 + MER5A DNA MER1_type 9 60 -129 402 269 107 40 chrX 128919145 128919232 -48054908 + MER5A DNA MER1_type 28 108 -81 228 35 0 0 chrX 128919232 128919261 -48054879 + (TA)n Simple_repeat Simple_repeat 1 29 0 1962 150 3 10 chrX 128919261 128919567 -48054573 - AluJb SINE Alu -8 304 1 402 269 107 40 chrX 128919567 128919627 -48054513 + MER5A DNA MER1_type 107 186 -3 941 114 8 8 chrX 128919878 128920010 -48054130 + FLAM_C SINE Alu 2 133 0 1064 191 27 0 chrX 128920070 128920253 -48053887 - MER5A DNA MER1_type 0 189 2 2145 224 83 12 chrX 128921171 128921667 -48052473 - MLT1H LTR MaLR -6 543 13 372 325 24 16 chrX 128921684 128921807 -48052333 + L2 LINE L2 2926 3049 -223 234 0 0 0 chrX 128921953 128921979 -48052161 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 510 203 0 0 chrX 128921993 128922072 -48052068 - AluJ/FLAM SINE Alu -232 80 2 372 266 0 11 chrX 128922075 128922169 -48051971 + L2 LINE L2 3221 3313 0 1899 170 3 0 chrX 128922542 128922830 -48051310 - AluJb SINE Alu -23 289 1 487 233 50 25 chrX 128923086 128923206 -48050934 + MER20 DNA MER1_type 2 124 -95 282 196 0 0 chrX 128923207 128923253 -48050887 + Alu SINE Alu 236 281 -21 287 188 0 0 chrX 128923261 128923309 -48050831 - AluSp SINE Alu -122 181 134 1441 164 52 34 chrX 128923309 128923577 -48050563 - AluJo SINE Alu -1 311 39 886 160 0 0 chrX 128923579 128923710 -48050430 - AluJo/FLAM SINE Alu -171 131 1 3321 198 22 81 chrX 128923710 128924185 -48049955 + L1M4 LINE L1 342 844 -5698 1720 151 3 69 chrX 128924185 128924504 -48049636 + AluJo SINE Alu 11 308 -4 3321 198 22 81 chrX 128924504 128924648 -48049492 + L1M4 LINE L1 844 902 -5640 1901 154 3 10 chrX 128924648 128924941 -48049199 + AluJb SINE Alu 5 295 -17 3321 198 22 81 chrX 128924941 128925149 -48048991 + L1M4 LINE L1 902 1121 -5421 2361 184 25 7 chrX 128925152 128925650 -48048490 + L1MB7 LINE L1 5274 5782 -402 443 118 0 29 chrX 128925661 128925729 -48048411 + Tigger2 DNA MER2_type 4 69 -2649 * 2569 118 72 42 chrX 128925719 128926079 -48048061 + Tigger2 DNA MER2_type 2273 2621 -97 626 0 14 0 chrX 128926079 128926153 -48047987 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 1720 167 0 14 chrX 128926156 128926438 -48047702 - AluJb SINE Alu -34 278 1 2569 118 72 42 chrX 128926438 128926505 -48047635 + Tigger2 DNA MER2_type 2622 2717 -1 1947 202 8 5 chrX 128926505 128926896 -48047244 + L1MB7 LINE L1 5781 6172 -12 2355 118 0 0 chrX 128926896 128927209 -48046931 - AluSq SINE Alu 0 313 1 2371 90 10 3 chrX 128927607 128927917 -48046223 - AluSq SINE Alu -1 312 1 1695 111 22 0 chrX 128928158 128928383 -48045757 - MER30 DNA MER1_type 0 230 1 2975 138 2 14 chrX 128928399 128928834 -48045306 - MSTB1 LTR MaLR 0 432 3 1955 144 0 16 chrX 128928868 128929181 -48044959 + AluJo SINE Alu 5 312 0 278 264 9 27 chrX 128929486 128929596 -48044544 + (TA)n Simple_repeat Simple_repeat 1 108 0 1772 174 3 10 chrX 128929791 128930089 -48044051 - AluJo SINE Alu -16 296 1 24 32 0 0 chrX 128930545 128930576 -48043564 + AT_rich Low_complexity Low_complexity 1 31 0 1888 163 10 0 chrX 128930819 128931113 -48043027 - AluJb SINE Alu -15 297 1 322 283 145 22 chrX 128931182 128931320 -48042820 - MIR3 SINE MIR -23 185 31 465 308 51 15 chrX 128931468 128931663 -48042477 + MIR SINE MIR 17 218 -44 336 24 0 0 chrX 128932187 128932228 -48041912 + (TC)n Simple_repeat Simple_repeat 2 42 0 198 91 0 0 chrX 128932229 128932262 -48041878 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 2260 117 0 0 chrX 128932562 128932862 -48041278 - AluSx SINE Alu -12 300 1 260 232 53 11 chrX 128933300 128933395 -48040745 + (TCTCTG)n Simple_repeat Simple_repeat 4 102 0 3974 132 41 2 chrX 128934209 128934822 -48039318 + L1MB2 LINE L1 5533 6169 -2 1641 172 22 45 chrX 128934830 128935144 -48038996 + AluJo SINE Alu 1 307 -5 2234 104 0 7 chrX 128935314 128935624 -48038516 + AluSq SINE Alu 1 308 0 401 200 0 13 chrX 128936028 128936103 -48038037 + Tigger5 DNA MER2_type 1 74 -2249 * 725 134 0 0 chrX 128936102 128936214 -48037926 + Tigger5 DNA MER2_type 2134 2245 -78 1461 155 20 92 chrX 128936292 128936596 -48037544 - AluJo SINE Alu -30 282 1 870 153 8 0 chrX 128936781 128936912 -48037228 - FLAM_C SINE Alu -11 132 1 244 280 30 10 chrX 128936918 128937018 -48037122 + T-rich Low_complexity Low_complexity 2 103 0 184 208 14 28 chrX 128937029 128937101 -48037039 + CT-rich Low_complexity Low_complexity 2 72 0 2289 281 48 40 chrX 128937190 128937549 -48036591 - HERV16 LTR ERVL -2018 2978 2623 2145 114 3 36 chrX 128937549 128937857 -48036283 + AluSx SINE Alu 1 298 -14 2289 281 48 40 chrX 128937857 128938247 -48035893 - HERV16 LTR ERVL -2373 2623 2223 952 290 23 4 chrX 128938252 128938514 -48035626 - HERV16 LTR ERVL -4271 725 459 500 189 40 34 chrX 128938522 128938670 -48035470 - L1MA9 LINE L1 -5 6307 6159 22 35 0 0 chrX 128939227 128939256 -48034884 + AT_rich Low_complexity Low_complexity 1 29 0 265 319 49 54 chrX 128939556 128939741 -48034399 + L2 LINE L2 2560 2743 -571 1802 222 98 62 chrX 128939742 128940073 -48034067 - MLT1E LTR MaLR -62 531 174 1720 154 10 19 chrX 128940073 128940384 -48033756 - AluJb SINE Alu 0 312 5 1802 222 98 62 chrX 128940384 128940565 -48033575 - MLT1E LTR MaLR -419 174 1 383 267 10 10 chrX 128940742 128940843 -48033297 + MIR3 SINE MIR 102 202 -6 518 247 52 46 chrX 128940893 128941067 -48033073 - MIR SINE MIR 0 262 88 952 207 0 132 chrX 128942345 128942611 -48031529 + MIR SINE MIR 7 237 -25 1714 170 11 0 chrX 128942672 128942948 -48031192 - AluJo SINE Alu -25 287 9 276 309 32 16 chrX 128942972 128943098 -48031042 - MIR SINE MIR -82 180 53 238 282 14 0 chrX 128943583 128943654 -48030486 + MER115 DNA AcHobo 4 75 -618 1026 164 0 0 chrX 128943706 128943865 -48030275 - FRAM SINE Alu -17 159 1 568 246 42 30 chrX 128943865 128944032 -48030108 + MIR SINE MIR 65 233 -29 1452 273 151 10 chrX 128944332 128944849 -48029291 + MLT1G1 LTR MaLR 1 590 -5 491 219 122 16 chrX 128946410 128946533 -48027607 - L2 LINE L2 0 3313 3178 1847 149 140 71 chrX 128946533 128946559 -48027581 + LTR49 LTR ERV1 1 24 -571 1888 167 0 0 chrX 128946559 128946847 -48027293 + AluJb SINE Alu 1 288 -24 1847 149 140 71 chrX 128946847 128947057 -48027083 + LTR49 LTR ERV1 24 218 -377 5675 116 19 3 chrX 128947057 128948706 -48025434 + L1PA15 LINE L1 4481 6165 0 1847 149 140 71 chrX 128948706 128949003 -48025137 + LTR49 LTR ERV1 218 572 -23 2520 257 57 38 chrX 128949019 128949891 -48024249 - L2 LINE L2 -129 3184 2287 3071 109 16 2 chrX 128949891 128950333 -48023807 - MER83 LTR ERV1 0 448 1 2520 257 57 38 chrX 128950333 128950561 -48023579 - L2 LINE L2 -1026 2287 2065 317 300 94 35 chrX 128950731 128950901 -48023239 - MIR3 SINE MIR -6 202 23 202 220 0 60 chrX 128952185 128952235 -48021905 - L2 LINE L2 -12 3301 3255 227 277 20 20 chrX 128952257 128952358 -48021782 - L1MC4 LINE L1 -1340 6702 6602 291 339 97 8 chrX 128952363 128952487 -48021653 - L2 LINE L2 -1122 2192 2058 386 152 33 43 chrX 128952622 128952714 -48021426 - LTR41 LTR ERVL -1 772 682 2020 130 3 17 chrX 128952791 128953092 -48021048 - AluJb SINE Alu -15 297 1 422 263 57 11 chrX 128953585 128953760 -48020380 - LTR41 LTR ERVL -590 183 1 2532 287 51 18 chrX 128954048 128954977 -48019163 - ERVL LTR ERVL -282 5482 4524 1982 136 68 14 chrX 128954987 128955341 -48018799 + Tigger3b DNA MER2_type 1 373 -858 186 43 0 0 chrX 128955352 128955375 -48018765 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 34382 34 0 0 chrX 128955375 128960526 -48013614 - L1PA3 LINE L1 0 6155 1004 17720 41 1 1 chrX 128960526 128963488 -48010652 + L1PA4 LINE L1 3189 6151 -4 1969 139 125 11 chrX 128963542 128963917 -48010223 + Tigger3b DNA MER2_type 813 1230 -2 2380 244 46 13 chrX 128963920 128964523 -48009617 - ERVL LTR ERVL -1250 4514 3892 695 78 0 20 chrX 128964825 128964927 -48009213 + MSTB LTR MaLR 1 100 -326 888 181 12 19 chrX 128964927 128965087 -48009053 - AluJo SINE Alu -138 174 16 756 201 14 64 chrX 128965104 128965323 -48008817 - L1ME LINE L1 -2360 3720 3513 307 140 0 0 chrX 128965324 128965374 -48008766 - MLT2D LTR ERVL 0 414 365 1985 129 31 28 chrX 128965386 128965584 -48008556 - MER7A DNA MER2_type -2693 345 146 2222 140 27 0 chrX 128965584 128965912 -48008228 - MER1B DNA MER1_type 0 337 1 1985 129 31 28 chrX 128965912 128966039 -48008101 - MER7A DNA MER2_type -2892 146 21 22 0 0 0 chrX 128966039 128966061 -48008079 + AT_rich Low_complexity Low_complexity 1 22 0 235 111 19 19 chrX 128966061 128966115 -48008025 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 242 0 63 chrX 128966124 128966219 -48007921 + L1MC4 LINE L1 6615 6703 -1339 2000 205 58 14 chrX 128966272 128966707 -48007433 - MLT2B1 LTR ERVL -66 454 1 356 238 66 25 chrX 128966708 128966830 -48007310 - L1ME LINE L1 -2565 3515 3389 1344 230 89 19 chrX 128966838 128967524 -48006616 - L1ME LINE L1 -3142 2938 2085 1687 195 0 3 chrX 128967532 128967835 -48006305 - AluJb SINE Alu -10 302 1 239 277 0 0 chrX 128967837 128967902 -48006238 - L1ME LINE L1 -5978 92 28 429 278 20 63 chrX 128967944 128968196 -48005944 - L1ME2 LINE L1 -13 6151 5911 5962 61 8 1 chrX 128968294 128969099 -48005041 + L1PA7 LINE L1 5366 6175 0 45 75 0 0 chrX 128969377 128969471 -48004669 + AT_rich Low_complexity Low_complexity 1 94 0 1771 188 10 3 chrX 128969844 128970152 -48003988 + AluJb SINE Alu 1 310 -2 438 331 28 13 chrX 128970420 128970816 -48003324 - L1M4 LINE L1 -1870 4276 3875 1160 108 13 0 chrX 128970875 128971033 -48003107 + AluSx SINE Alu 1 160 -152 452 316 6 29 chrX 128971212 128971383 -48002757 - LTR33 LTR ERVL -354 167 1 336 261 46 48 chrX 128971388 128971608 -48002532 - L1M4 LINE L1 -2277 3869 3624 430 241 98 23 chrX 128971757 128971890 -48002250 - MER5A DNA MER1_type -1 188 46 2146 204 34 0 chrX 128971890 128972355 -48001785 + L1MB5 LINE L1 5683 6163 -11 1764 167 3 7 chrX 128972748 128973041 -48001099 - AluSx SINE Alu -18 294 3 2043 129 3 6 chrX 128973366 128973677 -48000463 - AluSx SINE Alu -2 310 1 201 356 0 14 chrX 128974058 128974131 -48000009 + MIR SINE MIR 11 82 -180 2061 140 0 6 chrX 128974981 128975295 -47998845 - AluSx SINE Alu 0 312 1 944 185 82 82 chrX 128975724 128975863 -47998277 + AluJo SINE Alu 9 147 -165 2161 126 0 0 chrX 128975863 128976157 -47997983 + AluSx SINE Alu 1 294 -18 944 185 82 82 chrX 128976157 128976298 -47997842 + AluJo SINE Alu 146 289 -23 2254 116 3 0 chrX 128976784 128977095 -47997045 - AluSx SINE Alu 0 312 1 2094 153 0 0 chrX 128977901 128978209 -47995931 - AluJb SINE Alu -4 308 1 1143 153 6 0 chrX 128978260 128978430 -47995710 - FRAM SINE Alu -13 163 1 509 242 57 0 chrX 128978434 128978558 -47995582 + L2 LINE L2 3183 3313 0 1337 159 3 102 chrX 128978598 128978932 -47995208 - AluJo SINE Alu -11 301 1 952 193 37 0 chrX 128981653 128981814 -47992326 - FRAM SINE Alu -9 167 1 1373 176 9 0 chrX 128981848 128982064 -47992076 - AluJo SINE Alu -94 218 1 254 285 187 32 chrX 128982097 128982220 -47991920 + MIR SINE MIR 109 250 -12 2248 138 0 12 chrX 128983340 128983681 -47990459 + MER1B DNA MER1_type 1 337 0 1814 161 7 7 chrX 128983734 128984020 -47990120 - AluJo SINE Alu -26 286 1 658 238 116 11 chrX 128984307 128984496 -47989644 + MER63A DNA MER1_type 2 210 0 4353 150 36 72 chrX 128984639 128984974 -47989166 - MER6 DNA MER2_type 0 865 520 2295 102 0 7 chrX 128984974 128985278 -47988862 - AluSx SINE Alu -10 302 1 4353 150 36 72 chrX 128985278 128985291 -47988849 - MER6 DNA MER2_type -345 520 508 1650 172 14 28 chrX 128985291 128985582 -47988558 - AluJo SINE Alu -25 287 1 4353 150 36 72 chrX 128985582 128986127 -47988013 - MER6 DNA MER2_type -357 508 3 1949 74 13 50 chrX 128986567 128986673 -47987467 + L1PB1 LINE L1 5864 5972 -179 2090 128 0 20 chrX 128986673 128986971 -47987169 + AluSx SINE Alu 1 292 -20 1949 74 13 50 chrX 128986971 128987163 -47986977 + L1PB1 LINE L1 5972 6151 0 1164 137 0 0 chrX 128987230 128987398 -47986742 + AluSg/x SINE Alu 137 304 -8 1693 153 7 7 chrX 128987409 128987683 -47986457 + AluJb SINE Alu 1 274 -38 269 50 0 25 chrX 128987683 128987723 -47986417 + (TAAA)n Simple_repeat Simple_repeat 1 39 0 1964 110 11 4 chrX 128990312 128990585 -47983555 + AluSx SINE Alu 1 275 -37 367 278 0 28 chrX 128992485 128992593 -47981547 + MIR SINE MIR 91 195 -67 1313 207 68 18 chrX 128992610 128993026 -47981114 - MER110A LTR ERV1 0 468 66 572 190 51 0 chrX 128993007 128993144 -47980996 - MER110A LTR ERV1 -288 180 37 * 2237 168 34 17 chrX 128993570 128993802 -47980338 - MSTB LTR MaLR 0 426 182 1917 167 0 10 chrX 128993802 128994108 -47980032 - AluJb SINE Alu -9 303 1 2237 168 34 17 chrX 128994108 128994292 -47979848 - MSTB LTR MaLR -244 182 3 1639 228 71 36 chrX 128994921 128995463 -47978677 - MLT1F1 LTR MaLR 0 567 7 257 321 60 8 chrX 128996193 128996327 -47977813 + L2 LINE L2 2826 2966 -306 194 289 215 18 chrX 128997917 128998038 -47976102 - MIR SINE MIR -67 141 23 189 0 0 0 chrX 128998550 128998571 -47975569 + (T)n Simple_repeat Simple_repeat 1 21 0 255 280 47 37 chrX 128999037 128999144 -47974996 + L3 LINE CR1 1454 1561 -16 311 222 91 30 chrX 128999956 129000055 -47974085 + MIR3 SINE MIR 73 177 -31 21 36 0 0 chrX 129000659 129000687 -47973453 + AT_rich Low_complexity Low_complexity 1 28 0 2052 122 3 0 chrX 129000687 129000973 -47973167 - AluSx SINE Alu -25 287 1 308 299 51 0 chrX 129002077 129002214 -47971926 - HAL1 LINE L1 -760 1747 1604 275 234 58 29 chrX 129002247 129002384 -47971756 - HAL1 LINE L1 -1231 1276 1136 22 0 0 0 chrX 129003446 129003468 -47970672 + AT_rich Low_complexity Low_complexity 1 22 0 2661 151 11 16 chrX 129003488 129003938 -47970202 - L1PA15 LINE L1 -1 6164 5717 28202 121 14 49 chrX 129004020 129010404 -47963736 - L1PA8 LINE L1 -15 6157 1 1131 197 133 23 chrX 129010806 129011115 -47963025 + MER2 DNA MER2_type 1 343 -1 25 90 0 0 chrX 129011263 129011330 -47962810 + AT_rich Low_complexity Low_complexity 1 67 0 370 303 176 32 chrX 129012386 129012607 -47961533 - MIR SINE MIR 0 262 10 2997 243 71 16 chrX 129012696 129012795 -47961345 + L1MCa LINE L1 2248 2340 -4086 2092 142 3 16 chrX 129012795 129013106 -47961034 + AluSx SINE Alu 1 307 -5 2997 243 71 16 chrX 129013106 129013743 -47960397 + L1MCa LINE L1 2340 2940 -3486 2420 67 0 14 chrX 129013743 129014040 -47960100 + AluY SINE Alu 17 309 -2 207 0 0 0 chrX 129014040 129014063 -47960077 + (TA)n Simple_repeat Simple_repeat 1 23 0 2997 243 71 16 chrX 129014063 129014611 -47959529 + L1MCa LINE L1 2939 3605 -2821 1124 50 0 0 chrX 129014685 129014826 -47959314 + L1PA8 LINE L1 6030 6170 -2 1285 214 56 37 chrX 129015912 129016290 -47957850 + MLT1B LTR MaLR 1 385 -5 180 307 23 23 chrX 129018048 129018136 -47956004 + MIR3 SINE MIR 91 178 -30 2231 141 0 0 chrX 129018343 129018647 -47955493 - AluSx SINE Alu -3 309 6 226 278 26 82 chrX 129020144 129020338 -47953802 - MLT1J LTR MaLR -39 472 290 714 230 94 0 chrX 129020929 129021120 -47953020 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chrX 129021293 129021314 -47952826 + AT_rich Low_complexity Low_complexity 1 21 0 266 256 64 0 chrX 129022572 129022650 -47951490 + MIR3 SINE MIR 76 158 -50 2558 47 0 0 chrX 129023062 129023359 -47950781 + AluY SINE Alu 1 297 -14 1087 230 130 23 chrX 129023673 129023952 -47950188 - MER110A LTR ERV1 -13 455 152 1994 177 3 21 chrX 129023952 129024324 -47949816 - MLT1A1 LTR MaLR 0 365 1 1087 230 130 23 chrX 129024324 129024484 -47949656 - MER110A LTR ERV1 -316 152 10 192 361 0 0 chrX 129024599 129024660 -47949480 - L2 LINE L2 -204 3068 3008 252 59 0 0 chrX 129025241 129025275 -47948865 + (TC)n Simple_repeat Simple_repeat 1 34 0 7564 105 114 88 chrX 129026060 129027713 -47946427 - pTR5 LTR ERV1 0 2438 743 1607 163 87 7 chrX 129027995 129028283 -47945857 - AluJb SINE Alu 0 312 2 27823 121 11 60 chrX 129029247 129035750 -47938390 + L1PA8 LINE L1 1 6168 -4 1321 139 180 8 chrX 129035786 129036031 -47938109 - AluSg SINE Alu -13 287 1 743 192 73 13 chrX 129037035 129037186 -47936954 - FRAM SINE Alu -16 160 1 842 285 92 45 chrX 129039153 129039694 -47934446 + L2 LINE L2 1031 1545 -1768 297 68 0 0 chrX 129039694 129039738 -47934402 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 2106 138 0 7 chrX 129039739 129040043 -47934097 - AluSx SINE Alu -10 302 1 842 285 92 45 chrX 129040043 129040244 -47933896 + L2 LINE L2 1544 3313 0 1044 165 11 130 chrX 129046693 129046954 -47927186 - AluJo SINE Alu -34 278 49 518 237 124 12 chrX 129046970 129047139 -47927001 + MER5A DNA MER1_type 1 188 -1 1686 213 63 63 chrX 129048838 129049238 -47924902 - MLT1D LTR MaLR 0 505 103 1546 175 75 0 chrX 129049238 129049393 -47924747 - AluJo SINE Alu -24 288 146 258 32 0 0 chrX 129049393 129049424 -47924716 + (TG)n Simple_repeat Simple_repeat 2 32 0 1546 175 75 0 chrX 129049424 129049536 -47924604 - AluJo SINE Alu -166 146 1 1686 213 63 63 chrX 129049536 129049629 -47924511 - MLT1D LTR MaLR -401 104 12 284 280 127 67 chrX 129049633 129049947 -47924193 + ERVL LTR ERVL 5146 5478 -286 576 257 33 6 chrX 129050225 129050408 -47923732 + LTR41 LTR ERVL 1 188 -585 327 193 206 115 chrX 129050881 129051009 -47923131 + LTR41 LTR ERVL 509 624 -149 4063 114 85 2 chrX 129051009 129051612 -47922528 + MER39B LTR ERV1 1 653 0 327 193 206 115 chrX 129051612 129051726 -47922414 + LTR41 LTR ERVL 624 773 0 2160 176 81 9 chrX 129052311 129052349 -47921791 - MLT2C2 LTR ERVL 0 464 430 288 0 0 0 chrX 129052349 129052381 -47921759 + (TG)n Simple_repeat Simple_repeat 2 33 0 2160 176 81 9 chrX 129052381 129052427 -47921713 - MLT2C2 LTR ERVL -34 430 389 2925 154 62 24 chrX 129052427 129052559 -47921581 + MLT2B1 LTR ERVL 1 127 -393 2177 135 0 0 chrX 129052559 129052855 -47921285 + AluSx SINE Alu 1 296 -16 2925 154 62 24 chrX 129052855 129053178 -47920962 + MLT2B1 LTR ERVL 127 479 -41 514 41 27 0 chrX 129053178 129053251 -47920889 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2925 154 62 24 chrX 129053251 129053295 -47920845 + MLT2B1 LTR ERVL 479 520 0 2160 176 81 9 chrX 129053295 129053642 -47920498 - MLT2C2 LTR ERVL -75 389 1 318 167 0 0 chrX 129054168 129054228 -47919912 + (TA)n Simple_repeat Simple_repeat 2 61 0 981 221 40 50 chrX 129054333 129054555 -47919585 + MER58A DNA MER1_type 4 223 -1 45009 39 0 3 chrX 129056078 129062234 -47911906 - L1PA4 LINE L1 -5 6150 13 1334 207 90 22 chrX 129062462 129062785 -47911355 + MER2 DNA MER2_type 1 345 0 578 160 14 83 chrX 129063391 129063535 -47910605 + MLT1D LTR MaLR 1 134 -492 818 143 24 0 chrX 129063542 129063668 -47910472 + AluSp/q SINE Alu 177 305 -8 267 31 0 0 chrX 129063668 129063700 -47910440 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 2010 176 46 0 chrX 129063706 129064076 -47910064 + MLT1D LTR MaLR 119 505 0 2716 196 29 68 chrX 129064123 129064324 -47909816 + MER92B LTR ERV1 1 208 -428 2548 101 98 18 chrX 129064324 129064720 -47909420 - MSTA LTR MaLR 0 428 1 2716 196 29 68 chrX 129064720 129064929 -47909211 + MER92B LTR ERV1 208 379 -257 2285 100 0 7 chrX 129064929 129065229 -47908911 - AluSx SINE Alu -14 298 1 2716 196 29 68 chrX 129065229 129065466 -47908674 + MER92B LTR ERV1 379 624 -12 186 43 0 0 chrX 129065466 129065489 -47908651 + (TTG)n Simple_repeat Simple_repeat 2 24 0 3534 277 17 20 chrX 129065495 129066600 -47907540 - ERVL LTR ERVL -655 5109 3908 569 249 89 8 chrX 129066623 129066801 -47907339 - LTR41 LTR ERVL -580 215 5 1974 119 37 3 chrX 129067210 129067505 -47906635 - AluSg SINE Alu -5 305 1 1208 148 15 35 chrX 129068946 129069149 -47904991 - AluJb SINE Alu -12 300 102 507 79 45 45 chrX 129069149 129069238 -47904902 + Alu SINE Alu 221 309 0 484 68 0 41 chrX 129069245 129069318 -47904822 + L1MA2 LINE L1 6134 6203 -101 923 253 25 10 chrX 129069706 129069908 -47904232 - MER63A DNA MER1_type 0 210 6 430 303 5 20 chrX 129070248 129070443 -47903697 - L1MC5 LINE L1 -51 7910 7719 628 164 0 39 chrX 129070457 129070561 -47903579 - AluJo/FRAM SINE Alu -22 290 191 1611 129 0 13 chrX 129070562 129070794 -47903346 - AluJb SINE Alu -83 229 1 417 270 58 44 chrX 129072880 129073017 -47901123 + MIR3 SINE MIR 19 157 -51 2131 88 14 0 chrX 129074273 129074556 -47899584 - L1MA2 LINE L1 0 6304 6018 436 281 147 14 chrX 129075122 129075414 -47898726 + L1ME4a LINE L1 5743 6073 -48 2210 92 10 10 chrX 129076118 129076131 -47898009 - AluSx SINE Alu -17 295 283 180 0 0 0 chrX 129076131 129076151 -47897989 + (GA)n Simple_repeat Simple_repeat 1 20 0 2210 92 10 10 chrX 129076151 129076432 -47897708 - AluSx SINE Alu -28 284 1 1987 164 0 0 chrX 129077328 129077640 -47896500 + AluSx SINE Alu 1 312 0 1803 148 36 0 chrX 129078221 129078499 -47895641 + AluJb SINE Alu 1 288 -24 2016 141 3 13 chrX 129080364 129080677 -47893463 - AluJo SINE Alu -2 310 1 283 339 101 16 chrX 129082059 129082248 -47891892 - MIR SINE MIR -44 218 14 2142 98 0 52 chrX 129082339 129082646 -47891494 - AluSx SINE Alu -21 291 1 842 259 81 76 chrX 129082902 129083470 -47890670 - L1ME4a LINE L1 -2 6119 5549 1108 163 0 6 chrX 129083478 129083644 -47890496 - FRAM SINE Alu -1 165 1 185 228 280 5 chrX 129083807 129083890 -47890250 + MIR SINE MIR 44 140 -68 353 280 76 8 chrX 129084610 129084728 -47889412 - MER5A DNA MER1_type -46 143 18 303 208 0 14 chrX 129084736 129084808 -47889332 - MIR SINE MIR -56 152 82 1391 173 64 15 chrX 129085169 129085435 -47888705 + L1MD3 LINE L1 7712 7990 -5 1470 123 3 7 chrX 129085710 129085927 -47888213 - MSTB LTR MaLR -1 425 191 466 280 98 10 chrX 129086252 129086445 -47887695 - MIR SINE MIR 0 262 53 361 284 165 16 chrX 129088081 129088208 -47885932 - L2 LINE L2 -2 3270 3125 2166 71 0 0 chrX 129090745 129091013 -47883127 + AluY SINE Alu 38 305 -6 1771 178 27 0 chrX 129091016 129091309 -47882831 - AluJo SINE Alu -11 301 1 3837 118 2 6 chrX 129091334 129091861 -47882279 - L1PA15 LINE L1 -19 6146 5622 433 242 25 8 chrX 129091887 129092007 -47882133 - MER103 DNA DNA -43 123 2 333 0 0 0 chrX 129092397 129092434 -47881706 + (CA)n Simple_repeat Simple_repeat 1 37 0 288 276 23 11 chrX 129092483 129092570 -47881570 + CT-rich Low_complexity Low_complexity 5 92 0 1727 173 21 0 chrX 129092842 129093126 -47881014 + AluJo SINE Alu 1 290 -22 2494 69 0 0 chrX 129093141 129093430 -47880710 + AluSx SINE Alu 5 293 -19 1902 132 14 3 chrX 129094072 129094359 -47879781 + AluSq SINE Alu 1 290 -23 346 313 77 39 chrX 129094718 129094782 -47879358 + MIR SINE MIR 2 62 -200 2831 131 26 5 chrX 129094782 129095201 -47878939 + MSTA LTR MaLR 1 428 0 346 313 77 39 chrX 129095201 129095344 -47878796 + MIR SINE MIR 62 217 -45 2822 126 24 12 chrX 129095886 129096307 -47877833 - MSTB LTR MaLR 0 426 1 2113 91 7 7 chrX 129096560 129096847 -47877293 + AluSx SINE Alu 1 287 -25 189 0 0 0 chrX 129096847 129096868 -47877272 + (GA)n Simple_repeat Simple_repeat 2 22 0 183 161 0 0 chrX 129097437 129097468 -47876672 - L2 LINE L2 -20 3252 3222 267 279 70 12 chrX 129097627 129097713 -47876427 - MIR SINE MIR -110 152 62 498 49 37 12 chrX 129097932 129098014 -47876126 + (GAAAA)n Simple_repeat Simple_repeat 1 84 0 1015 146 4 133 chrX 129099004 129099109 -47875031 - MER3 DNA MER1_type 0 209 151 2429 85 0 19 chrX 129099109 129099428 -47874712 + AluSq SINE Alu 1 313 0 1015 146 4 133 chrX 129099428 129099562 -47874578 - MER3 DNA MER1_type -58 151 1 22 0 0 0 chrX 129099958 129099980 -47874160 + AT_rich Low_complexity Low_complexity 1 22 0 459 246 33 83 chrX 129100011 129100251 -47873889 - L2 LINE L2 -3 3310 3083 316 257 19 19 chrX 129100502 129100607 -47873533 - MLT1I LTR MaLR 0 409 305 1744 214 68 29 chrX 129100608 129100838 -47873302 + L1ME3A LINE L1 5669 5888 -282 3094 190 14 33 chrX 129100838 129101474 -47872666 + MLT1E3 LTR MaLR 1 624 0 1744 214 68 29 chrX 129101474 129101725 -47872415 + L1ME3A LINE L1 5888 6169 -1 927 156 0 0 chrX 129102013 129102148 -47871992 + AluJb SINE Alu 1 135 -177 1862 171 0 7 chrX 129102148 129102458 -47871682 + AluJb SINE Alu 1 308 -4 610 294 29 37 chrX 129102593 129102838 -47871302 - MIR SINE MIR 0 262 20 1153 160 176 21 chrX 129103779 129103930 -47870210 - AluJb SINE Alu -24 288 162 207 0 0 0 chrX 129103930 129103953 -47870187 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 1153 160 176 21 chrX 129103953 129104039 -47870101 - AluJb SINE Alu -150 162 14 294 333 27 0 chrX 129105310 129105421 -47868719 + MIR SINE MIR 80 193 -69 505 298 94 0 chrX 129105938 129106119 -47868021 + MIR SINE MIR 48 245 -17 2059 133 0 32 chrX 129106982 129107291 -47866849 - AluSx SINE Alu -13 299 1 632 268 6 11 chrX 129107575 129107754 -47866386 - MIR3 SINE MIR -26 182 5 301 328 38 8 chrX 129108399 129108530 -47865610 - MIR SINE MIR -10 252 118 1874 137 0 62 chrX 129108689 129109011 -47865129 - AluJb SINE Alu 0 312 11 209 227 0 0 chrX 129109027 129109071 -47865069 - MIR SINE MIR -66 142 99 2147 123 3 0 chrX 129109187 129109479 -47864661 + AluSx SINE Alu 1 293 -19 442 273 6 77 chrX 129110252 129110435 -47863705 - MIR3 SINE MIR -16 192 23 220 346 0 48 chrX 129112107 129112211 -47861929 - MIR SINE MIR -72 190 92 359 179 61 7 chrX 129112720 129112840 -47861300 + MIR3 SINE MIR 34 166 -42 180 237 151 32 chrX 129112865 129112958 -47861182 - L2 LINE L2 0 3272 3169 192 40 0 0 chrX 129114410 129114435 -47859705 + (CCG)n Simple_repeat Simple_repeat 1 25 0 229 338 0 0 chrX 129115618 129115692 -47858448 + CT-rich Low_complexity Low_complexity 2 75 0 235 226 16 0 chrX 129117396 129117458 -47856682 + (TG)n Simple_repeat Simple_repeat 1 63 0 230 310 0 0 chrX 129117635 129117706 -47856434 + MIR SINE MIR 30 100 -108 300 302 24 16 chrX 129117818 129117944 -47856196 - MIR SINE MIR -115 147 21 180 0 0 0 chrX 129118511 129118531 -47855609 + (GA)n Simple_repeat Simple_repeat 2 21 0 259 352 11 0 chrX 129120295 129120386 -47853754 + MIR3 SINE MIR 88 179 -29 311 279 49 116 chrX 129121162 129121541 -47852599 + L1ME3 LINE L1 5289 5643 -478 395 263 161 0 chrX 129121591 129121709 -47852431 - L2 LINE L2 0 3272 3136 339 277 98 16 chrX 129121781 129121965 -47852175 + L1ME3 LINE L1 5685 5883 -238 36 0 0 0 chrX 129122498 129122534 -47851606 + AT_rich Low_complexity Low_complexity 1 36 0 749 289 32 0 chrX 129124121 129124401 -47849739 + L1M4 LINE L1 2134 2422 -3724 2001 151 0 0 chrX 129124532 129124823 -47849317 + AluJb SINE Alu 6 296 -16 820 215 48 5 chrX 129124827 129125036 -47849104 - MIR SINE MIR -21 241 24 231 145 84 199 chrX 129125851 129125982 -47848158 + MER103 DNA DNA 18 133 -33 2398 129 5 49 chrX 129126095 129126392 -47847748 - L1PB3 LINE L1 0 6154 5845 1517 145 62 51 chrX 129126392 129126668 -47847472 + AluSx SINE Alu 1 279 -33 324 0 0 0 chrX 129126672 129126708 -47847432 + (TAA)n Simple_repeat Simple_repeat 2 37 0 2398 129 5 49 chrX 129126708 129126830 -47847310 - L1PB3 LINE L1 -312 5842 5749 388 231 34 34 chrX 129127918 129128035 -47846105 + MIR3 SINE MIR 59 175 -33 309 271 16 31 chrX 129128343 129128472 -47845668 + MIR SINE MIR 15 141 -121 1377 175 40 10 chrX 129129134 129129437 -47844703 + MER33 DNA MER1_type 1 312 -12 239 289 0 0 chrX 129130315 129130367 -47843773 + polypurine Low_complexity Low_complexity 1 52 0 239 318 27 9 chrX 129130389 129130499 -47843641 + MIR SINE MIR 116 227 -35 477 34 0 0 chrX 129131497 129131512 -47842628 + (CA)n Simple_repeat Simple_repeat 1 74 0 477 34 0 0 chrX 129131512 129131571 -47842569 + (CA)n Simple_repeat Simple_repeat 2 60 0 225 151 96 27 chrX 129131965 129132038 -47842102 + LTR66 LTR ERVL 366 443 -167 209 211 26 44 chrX 129132061 129132175 -47841965 + (TA)n Simple_repeat Simple_repeat 2 113 0 216 86 0 0 chrX 129132195 129132230 -47841910 + (TATG)n Simple_repeat Simple_repeat 2 36 0 410 221 39 10 chrX 129132254 129132358 -47841782 + L1ME3 LINE L1 6056 6162 0 547 273 4 11 chrX 129132422 129132576 -47841564 + L1ME LINE L1 5544 5680 -441 227 381 0 0 chrX 129134108 129134213 -47839927 + MIR3 SINE MIR 71 175 -33 24 67 0 0 chrX 129135327 129135372 -47838768 + AT_rich Low_complexity Low_complexity 1 45 0 1184 198 22 8 chrX 129135619 129135887 -47838253 - L1MB8 LINE L1 -5 6173 5902 861 53 0 18 chrX 129136585 129136699 -47837441 - L1PA3 LINE L1 0 6155 6044 298 197 26 13 chrX 129136803 129136879 -47837261 - MIR SINE MIR -107 155 79 288 333 94 16 chrX 129137027 129137218 -47836922 - MIR SINE MIR -14 248 44 2089 78 4 0 chrX 129138470 129138727 -47835413 + AluSx SINE Alu 18 275 -37 345 271 56 9 chrX 129139000 129139107 -47835033 - L2 LINE L2 -15 3257 3146 252 0 0 0 chrX 129140151 129140179 -47833961 + (TG)n Simple_repeat Simple_repeat 2 29 0 5328 129 10 16 chrX 129141601 129142091 -47832049 + L1PB4 LINE L1 5300 5784 -372 450 94 0 0 chrX 129142091 129142155 -47831985 + (TA)n Simple_repeat Simple_repeat 1 64 0 5328 129 10 16 chrX 129142155 129142526 -47831614 + L1PB4 LINE L1 5784 6156 0 2205 130 3 0 chrX 129142653 129142954 -47831186 + AluSx SINE Alu 1 302 -10 255 210 30 20 chrX 129143205 129143305 -47830835 + CT-rich Low_complexity Low_complexity 4 104 0 193 255 0 0 chrX 129143399 129143446 -47830694 + L2 LINE L2 3251 3297 -16 810 311 77 38 chrX 129146386 129146856 -47827284 + L3 LINE CR1 912 1399 -178 51 58 0 0 chrX 129147871 129147957 -47826183 + AT_rich Low_complexity Low_complexity 1 86 0 1207 182 82 38 chrX 129148731 129149022 -47825118 - MER58B DNA MER1_type 0 341 38 638 282 147 101 chrX 129149848 129150049 -47824091 + L3 LINE CR1 704 894 -683 1190 172 4 64 chrX 129150049 129150282 -47823858 - MER20 DNA MER1_type 0 219 1 638 282 147 101 chrX 129150282 129150905 -47823235 + L3 LINE CR1 894 1566 -11 453 267 69 0 chrX 129152675 129152791 -47821349 - MIR3 SINE MIR -4 204 81 210 163 0 23 chrX 129153544 129153587 -47820553 + (CA)n Simple_repeat Simple_repeat 2 43 0 256 240 158 10 chrX 129154209 129154356 -47819784 + MIR SINE MIR 31 245 -17 674 195 31 38 chrX 129154467 129154626 -47819514 + MER106B DNA MER1_type 1 158 -901 1807 161 7 10 chrX 129154677 129154976 -47819164 + AluJo SINE Alu 1 298 -14 1820 144 0 23 chrX 129155968 129156273 -47817867 - AluJo SINE Alu -10 302 5 1596 157 50 43 chrX 129156572 129156872 -47817268 + AluJb SINE Alu 1 302 -10 185 343 98 29 chrX 129157183 129157285 -47816855 + MIR SINE MIR 33 141 -67 23 0 0 0 chrX 129157445 129157468 -47816672 + AT_rich Low_complexity Low_complexity 1 23 0 476 276 47 41 chrX 129158042 129158212 -47815928 - MIR SINE MIR -1 261 91 424 298 8 24 chrX 129158216 129158340 -47815800 + L2 LINE L2 3190 3311 -2 1900 133 91 7 chrX 129158959 129159267 -47814873 + MER44D DNA MER2_type 4 607 -2 2523 77 0 0 chrX 129160022 129160332 -47813808 + AluSg SINE Alu 1 310 0 239 244 65 41 chrX 129160436 129160559 -47813581 - MIR3 SINE MIR -29 179 54 * 321 192 173 29 chrX 129160552 129160656 -47813484 + L2 LINE L2 3190 3308 -5 856 254 0 67 chrX 129161635 129161844 -47812296 - MER91A DNA MER1_type -1 195 1 348 278 127 23 chrX 129161845 129162018 -47812122 - L3 LINE CR1 -156 1421 1231 232 273 36 0 chrX 129162398 129162453 -47811687 + polypurine Low_complexity Low_complexity 2 58 0 799 181 10 13 chrX 129162457 129162763 -47811377 + GA-rich Low_complexity Low_complexity 1 305 0 191 288 41 27 chrX 129162869 129162942 -47811198 - L2 LINE L2 -2 3270 3197 480 306 49 81 chrX 129163482 129163596 -47810544 - L1ME4a LINE L1 -56 6065 5949 2200 112 6 16 chrX 129163596 129163909 -47810231 - AluSx SINE Alu -2 310 1 480 306 49 81 chrX 129163909 129164563 -47809577 - L1ME4a LINE L1 -172 5949 5321 262 253 13 25 chrX 129165039 129165118 -47809022 - L1P LINE L1 -1333 4813 4736 405 299 0 26 chrX 129165251 129165368 -47808772 + MIR SINE MIR 54 167 -95 889 199 10 20 chrX 129165370 129165566 -47808574 - MER3 DNA MER1_type -10 199 6 275 234 65 13 chrX 129165566 129165643 -47808497 + MIR SINE MIR 161 241 -21 1683 164 3 18 chrX 129166156 129166442 -47807698 - AluJo SINE Alu -30 282 1 30686 100 7 14 chrX 129166713 129167795 -47806345 + L1PA7 LINE L1 1443 2531 -5061 16952 29 1 1 chrX 129167795 129170461 -47803679 - L1PA3 LINE L1 0 6155 3490 30686 100 7 14 chrX 129170461 129174762 -47799378 + L1PA7 LINE L1 2531 7592 0 445 274 59 7 chrX 129175195 129175348 -47798792 - MIR3 SINE MIR -15 193 33 217 343 86 0 chrX 129176370 129176440 -47797700 - L2 LINE L2 -50 3222 3147 204 40 0 0 chrX 129176518 129176543 -47797597 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 2282 97 0 16 chrX 129177114 129177422 -47796718 + AluSc SINE Alu 1 303 -6 192 343 82 0 chrX 129179106 129179179 -47794961 - MIR SINE MIR -91 117 39 381 267 92 8 chrX 129180007 129180127 -47794013 - MIR SINE MIR -9 253 124 269 314 84 36 chrX 129180192 129180381 -47793759 - MIR SINE MIR -59 203 13 2247 138 64 7 chrX 129180889 129181326 -47792814 - MER61C LTR ERV1 0 723 5 278 326 70 23 chrX 129182513 129182642 -47791498 - L2 LINE L2 0 3272 3138 230 272 39 58 chrX 129182803 129182906 -47791234 - L3 LINE CR1 -31 1546 1446 2113 119 37 0 chrX 129183072 129183366 -47790774 + AluSx SINE Alu 1 305 -7 18285 39 2 1 chrX 129183446 129186317 -47787823 - L1PA5 LINE L1 0 6154 3281 191 237 0 0 chrX 129186321 129186359 -47787781 - L2 LINE L2 -11 3302 3265 5143 114 21 0 chrX 129186364 129187068 -47787072 + LTR62 LTR ERVK 1 719 0 25 51 0 0 chrX 129187779 129187818 -47786322 + AT_rich Low_complexity Low_complexity 1 39 0 1007 191 15 0 chrX 129187824 129188028 -47786112 + L1MB7 LINE L1 5640 5846 -338 850 235 10 10 chrX 129188031 129188227 -47785913 + L1MB7 LINE L1 5973 6168 -16 1776 241 87 50 chrX 129188645 129188716 -47785424 + L1M4 LINE L1 875 942 -5704 225 119 0 0 chrX 129188716 129188758 -47785382 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1776 241 87 50 chrX 129188758 129189671 -47784469 + L1M4 LINE L1 942 1854 -4792 2300 102 3 0 chrX 129189671 129189964 -47784176 + AluSx SINE Alu 1 294 -18 1776 241 87 50 chrX 129189964 129190078 -47784062 + L1M4 LINE L1 1854 1962 -4684 3644 189 41 59 chrX 129190098 129190985 -47783155 + L1MB7 LINE L1 5254 6156 -28 2830 86 19 11 chrX 129190985 129191344 -47782796 - THE1B LTR MaLR 0 364 3 1799 155 4 4 chrX 129191344 129191622 -47782518 - AluJb SINE Alu -34 278 1 3644 189 41 59 chrX 129191622 129191669 -47782471 + L1MB7 LINE L1 6154 6172 -12 219 146 0 0 chrX 129191670 129191711 -47782429 + (TG)n Simple_repeat Simple_repeat 2 42 0 579 247 66 57 chrX 129191717 129191944 -47782196 - MIR SINE MIR -32 230 2 1054 161 85 0 chrX 129192585 129192796 -47781344 + L1 LINE L1 4601 4829 -1317 744 225 19 101 chrX 129192905 129193172 -47780968 - MIR SINE MIR 0 262 18 675 50 0 0 chrX 129193204 129193284 -47780856 - MADE1 DNA Mariner 0 80 1 6609 34 0 0 chrX 129194203 129194936 -47779204 - L1PA3 LINE L1 0 6155 5423 450 183 23 0 chrX 129195117 129195223 -47778917 + MER5A DNA MER1_type 4 112 -77 207 172 273 20 chrX 129195148 129195247 -47778893 - MER5A DNA MER1_type -23 166 43 * 1192 160 76 141 chrX 129195254 129195355 -47778785 + MER2 DNA MER2_type 1 107 -237 2187 124 0 0 chrX 129195355 129195646 -47778494 + AluSx SINE Alu 1 291 -21 1192 160 76 141 chrX 129195646 129195912 -47778228 + MER2 DNA MER2_type 107 344 0 216 276 13 26 chrX 129195997 129196073 -47778067 + MIR SINE MIR 47 121 -141 2109 117 3 0 chrX 129196977 129197259 -47776881 - AluSq SINE Alu -30 283 1 562 13 13 13 chrX 129197287 129197363 -47776777 + (TTATG)n Simple_repeat Simple_repeat 2 77 0 2267 103 3 0 chrX 129197363 129197654 -47776486 - AluSx SINE Alu -20 292 1 191 111 0 28 chrX 129198269 129198305 -47775835 + (TA)n Simple_repeat Simple_repeat 2 36 0 3196 91 2 16 chrX 129198807 129199007 -47775133 + L1MA1 LINE L1 5867 6068 -234 2324 93 0 3 chrX 129199007 129199308 -47774832 + AluY SINE Alu 1 300 -11 3196 91 2 16 chrX 129199308 129199549 -47774591 + L1MA1 LINE L1 6068 6302 0 933 241 25 17 chrX 129200191 129200432 -47773708 + MIR SINE MIR 20 262 0 2482 113 9 9 chrX 129200734 129201071 -47773069 + MER1B DNA MER1_type 1 337 0 234 0 0 0 chrX 129201200 129201226 -47772914 + (TA)n Simple_repeat Simple_repeat 1 26 0 3447 277 84 18 chrX 129201302 129202830 -47771310 + L1MEc LINE L1 22 1661 -4613 407 345 110 5 chrX 129202851 129203042 -47771098 - L1M4 LINE L1 -1785 4361 4151 880 223 39 77 chrX 129203049 129203252 -47770888 + L1MEc LINE L1 1671 1853 -4543 814 205 0 0 chrX 129203252 129203379 -47770761 + FLAM_C SINE Alu 1 127 -6 880 223 39 77 chrX 129203379 129203565 -47770575 + L1MEc LINE L1 1853 2045 -4351 2064 254 43 43 chrX 129203566 129204152 -47769988 + MLT1E LTR MaLR 1 586 -7 234 284 43 43 chrX 129204184 129204325 -47769815 + L1MEc LINE L1 2044 2184 -4212 2034 137 0 3 chrX 129204921 129205221 -47768919 - AluJb SINE Alu -13 299 1 477 206 111 0 chrX 129205221 129205347 -47768793 - MER117 DNA MER1_type -57 140 1 3589 213 58 18 chrX 129205572 129206501 -47767639 + L1MB8 LINE L1 3938 4903 -1243 679 261 139 43 chrX 129206998 129207322 -47766818 - L1ME3 LINE L1 -197 5965 5673 1642 148 64 17 chrX 129207322 129207352 -47766788 - AluJo SINE Alu 0 312 285 243 0 0 0 chrX 129207352 129207379 -47766761 + (TG)n Simple_repeat Simple_repeat 2 28 0 1642 148 64 17 chrX 129207379 129207646 -47766494 - AluJo SINE Alu -27 285 1 679 261 139 43 chrX 129207646 129207884 -47766256 - L1ME3 LINE L1 -489 5673 5323 189 0 0 0 chrX 129207884 129207905 -47766235 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 872 285 65 50 chrX 129207921 129208443 -47765697 - L1ME3 LINE L1 -869 5277 4748 590 136 34 0 chrX 129208495 129208583 -47765557 + AluJo SINE Alu 46 136 -176 1158 168 24 34 chrX 129208645 129208853 -47765287 + AluJb SINE Alu 86 291 -21 909 278 83 31 chrX 129208854 129209320 -47764820 - L1ME3 LINE L1 -1504 4642 4143 2184 159 55 31 chrX 129209320 129209498 -47764642 + MSTB1 LTR MaLR 1 173 -259 2135 95 67 0 chrX 129209498 129209783 -47764357 - AluSx SINE Alu -8 304 1 2184 159 55 31 chrX 129209783 129210026 -47764114 + MSTB1 LTR MaLR 173 432 0 909 278 83 31 chrX 129210026 129210099 -47764041 - L1ME3 LINE L1 -2003 4143 4075 4195 196 49 6 chrX 129210492 129211715 -47762425 + L1MB8 LINE L1 4891 6167 -11 207 0 0 0 chrX 129211810 129211833 -47762307 + (A)n Simple_repeat Simple_repeat 1 23 0 2386 94 0 0 chrX 129213686 129213984 -47760156 + AluSx SINE Alu 1 298 -14 431 290 48 28 chrX 129214306 129214451 -47759689 + L2 LINE L2 2911 3058 -255 2486 64 3 0 chrX 129214457 129214755 -47759385 - AluY SINE Alu -12 299 1 307 264 136 9 chrX 129214822 129214932 -47759208 + MIR SINE MIR 14 137 -125 419 314 37 42 chrX 129214965 129215156 -47758984 + MIR3 SINE MIR 19 208 0 2265 205 48 31 chrX 129215547 129216359 -47757781 + LTR27 LTR ERV1 7 1459 -141 364 291 23 70 chrX 129216369 129216541 -47757599 + MER52A LTR ERV1 1592 1755 0 410 266 39 39 chrX 129218272 129218400 -47755740 + MIR SINE MIR 25 152 -56 198 103 0 0 chrX 129218405 129218434 -47755706 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2261 93 0 20 chrX 129218551 129218851 -47755289 - AluSg SINE Alu -16 294 1 418 251 116 17 chrX 129218959 129219100 -47755040 + MIR3 SINE MIR 5 173 -35 2056 214 52 63 chrX 129219241 129219793 -47754347 + MLT2B3 LTR ERVL 1 546 -8 240 204 0 0 chrX 129220011 129220060 -47754080 + MIR3 SINE MIR 151 199 -9 2039 124 24 3 chrX 129220135 129220425 -47753715 + AluSx SINE Alu 1 296 -16 278 277 35 43 chrX 129220442 129220583 -47753557 - MARNA DNA Mariner -374 212 73 385 276 52 30 chrX 129220804 129220938 -47753202 - MIR SINE MIR -98 164 28 478 346 90 11 chrX 129223761 129224027 -47750113 - L2 LINE L2 -565 2749 2463 664 219 168 0 chrX 129224037 129224192 -47749948 + MER5A DNA MER1_type 9 189 0 1491 44 0 39 chrX 129224939 129225120 -47749020 + AluY SINE Alu 1 174 -137 2693 130 20 43 chrX 129225343 129225610 -47748530 - MER4E LTR ERV1 0 766 494 2046 139 0 0 chrX 129225610 129225904 -47748236 + AluSx SINE Alu 12 305 -7 2693 130 20 43 chrX 129225904 129226249 -47747891 - MER4E LTR ERV1 -272 494 1 252 289 121 60 chrX 129226433 129226599 -47747541 - MIR SINE MIR -42 220 45 1012 198 99 27 chrX 129227300 129227522 -47746618 + MER21B LTR ERV1 12 249 -614 1194 181 9 9 chrX 129227528 129227744 -47746396 + AluJo SINE Alu 5 220 -92 914 174 0 0 chrX 129227767 129227916 -47746224 + FRAM SINE Alu 15 163 -13 2305 192 143 14 chrX 129227919 129228470 -47745670 + MER21B LTR ERV1 239 860 -3 520 270 114 24 chrX 129228633 129228844 -47745296 - MIR SINE MIR -5 257 28 2141 141 0 0 chrX 129229459 129229771 -47744369 + AluSx SINE Alu 1 312 0 683 320 69 21 chrX 129229884 129230303 -47743837 + L2 LINE L2 2383 2821 -493 1252 170 35 4 chrX 129230474 129230703 -47743437 + AluJb SINE Alu 75 310 -2 2402 144 7 48 chrX 129230719 129230938 -47743202 - MSTB LTR MaLR -27 399 203 2093 112 42 0 chrX 129230938 129231225 -47742915 - AluSx SINE Alu -13 299 1 2402 144 7 48 chrX 129231225 129231421 -47742719 - MSTB LTR MaLR -223 203 1 313 290 92 15 chrX 129231533 129231664 -47742476 + L2 LINE L2 3173 3313 0 254 259 0 17 chrX 129232073 129232131 -47742009 + L1MDa LINE L1 17 73 -6467 805 209 0 0 chrX 129232162 129232296 -47741844 + FAM SINE Alu 1 134 -51 1227 254 14 14 chrX 129232311 129232692 -47741448 + L1MDa LINE L1 2673 3036 -3504 525 370 43 14 chrX 129232676 129232939 -47741201 + L1MDb LINE L1 399 656 -5753 * 2015 140 3 13 chrX 129232975 129233283 -47740857 - AluSx SINE Alu -7 305 1 1979 226 6 80 chrX 129233284 129233823 -47740317 + L1MDb LINE L1 497 995 -5414 6247 219 64 18 chrX 129233823 129234723 -47739417 + L1M4b LINE L1 34 1032 -5827 2534 57 0 0 chrX 129234723 129235020 -47739120 + AluY SINE Alu 1 297 -14 6247 219 64 18 chrX 129235020 129235623 -47738517 + L1M4b LINE L1 1032 1606 -5253 360 149 93 0 chrX 129235624 129235785 -47738355 + (TA)n Simple_repeat Simple_repeat 1 176 0 1647 253 54 38 chrX 129235787 129235863 -47738277 + L1M4b LINE L1 1604 1677 -5282 2178 108 0 14 chrX 129235863 129236160 -47737980 + AluSx SINE Alu 1 293 -19 1647 253 54 38 chrX 129236160 129236907 -47737233 + L1M4b LINE L1 1677 2428 -4531 2099 254 51 30 chrX 129237044 129238187 -47735953 + L1M4b LINE L1 2445 3566 -3391 1277 177 0 9 chrX 129238189 129238409 -47735731 - AluJb SINE Alu -20 292 75 2512 247 38 29 chrX 129238409 129239369 -47734771 + L1M4b LINE L1 3561 4528 -2429 2195 149 0 3 chrX 129239369 129239692 -47734448 + L1PA15 LINE L1 5844 6165 0 4851 163 25 3 chrX 129239693 129240578 -47733562 + L1M4b LINE L1 4965 5868 -1089 * 5250 209 50 48 chrX 129240552 129240703 -47733437 + L1M4 LINE L1 4553 4702 -2293 1862 171 3 0 chrX 129240703 129241008 -47733132 + AluJo SINE Alu 5 310 -2 5250 209 50 48 chrX 129241008 129241178 -47732962 + L1M4 LINE L1 4702 4870 -2125 1459 214 11 4 chrX 129241178 129241483 -47732657 + AluJo SINE Alu 1 307 0 5250 209 50 48 chrX 129241483 129241664 -47732476 + L1M4 LINE L1 4870 5049 -1946 2277 168 84 2 chrX 129241664 129242058 -47732082 - MSTB LTR MaLR 0 426 1 5250 209 50 48 chrX 129242058 129242161 -47731979 + L1M4 LINE L1 5049 5150 -1845 2254 97 13 0 chrX 129242161 129242460 -47731680 + AluSx SINE Alu 1 303 -9 5250 209 50 48 chrX 129242460 129243584 -47730556 + L1M4 LINE L1 5150 6290 -705 405 272 52 29 chrX 129246131 129246234 -47727906 + MIR SINE MIR 49 148 -114 16121 34 6 0 chrX 129246234 129248831 -47725309 + L1PA5 LINE L1 3548 6154 0 6597 49 8 0 chrX 129248831 129249593 -47724547 + L1PA5 LINE L1 5383 6150 -4 405 272 52 29 chrX 129249593 129249661 -47724479 + MIR SINE MIR 147 225 -37 305 309 60 13 chrX 129249882 129250031 -47724109 - L1M4 LINE L1 -3346 2800 2645 225 94 0 0 chrX 129250034 129250066 -47724074 + (TG)n Simple_repeat Simple_repeat 1 32 0 234 292 123 36 chrX 129250066 129250285 -47723855 - L1M4 LINE L1 -3461 2685 2448 2542 69 0 0 chrX 129250381 129250685 -47723455 + AluY SINE Alu 1 304 -7 486 294 74 31 chrX 129253499 129253662 -47720478 - MIR SINE MIR -80 182 13 687 194 174 0 chrX 129254010 129254165 -47719975 - MIR SINE MIR -68 194 13 238 227 107 27 chrX 129254182 129254257 -47719883 + L2 LINE L2 3229 3309 -4 276 220 106 98 chrX 129255805 129255867 -47718273 - L2 LINE L2 -1 3271 3211 1173 167 5 14 chrX 129255867 129256077 -47718063 - L1MB8 LINE L1 0 6178 5971 276 220 106 98 chrX 129256077 129256146 -47717994 - L2 LINE L2 -61 3211 3139 607 296 49 17 chrX 129256167 129256360 -47717780 - MIR3 SINE MIR -2 206 9 1197 211 12 16 chrX 129256370 129256626 -47717514 + MIR SINE MIR 8 262 0 353 360 84 39 chrX 129256765 129257076 -47717064 - L2 LINE L2 -51 3221 2897 1025 145 24 0 chrX 129257222 129257388 -47716752 + AluSg/x SINE Alu 138 307 -3 250 310 92 4 chrX 129257428 129257572 -47716568 - MIR SINE MIR -76 132 19 2214 82 0 7 chrX 129257649 129257964 -47716176 + AluSg1 SINE Alu 1 313 0 339 341 190 35 chrX 129258043 129258983 -47715157 - L2 LINE L2 -623 2691 1606 3385 141 67 123 chrX 129259235 129259431 -47714709 + L1MB3 LINE L1 5290 5496 -687 2305 89 0 0 chrX 129259431 129259768 -47714372 - AluSg SINE Alu 0 337 1 3385 141 67 123 chrX 129259768 129260167 -47713973 + L1MB3 LINE L1 5496 5815 -368 360 0 0 0 chrX 129260167 129260207 -47713933 + (TA)n Simple_repeat Simple_repeat 2 41 0 3385 141 67 123 chrX 129260207 129260557 -47713583 + L1MB3 LINE L1 5815 6183 0 244 172 0 86 chrX 129260779 129260837 -47713303 - MER5A DNA MER1_type -9 180 128 814 263 118 56 chrX 129260874 129261288 -47712852 - MLT1H LTR MaLR 0 549 110 225 304 22 43 chrX 129261325 129261417 -47712723 - MER5A DNA MER1_type -57 132 43 378 184 0 0 chrX 129261417 129261493 -47712647 + CT-rich Low_complexity Low_complexity 4 79 0 1545 154 38 38 chrX 129261503 129261769 -47712371 - AluJo SINE Alu -46 266 1 288 327 99 0 chrX 129262371 129262472 -47711668 + L2 LINE L2 3158 3268 -4 195 250 1 0 chrX 129262475 129262519 -47711621 - MER5B DNA MER1_type -54 124 92 184 165 47 153 chrX 129262542 129262604 -47711536 - MER5B DNA MER1_type -2 176 124 2133 119 0 13 chrX 129262604 129262914 -47711226 + AluSx SINE Alu 1 306 -6 184 165 47 153 chrX 129262914 129262936 -47711204 - MER5B DNA MER1_type -54 124 101 610 253 56 22 chrX 129264705 129264772 -47709368 + MIR SINE MIR 5 68 -194 454 99 127 0 chrX 129264772 129264843 -47709297 - MADE1 DNA Mariner 0 80 1 610 253 56 22 chrX 129264843 129264953 -47709187 + MIR SINE MIR 68 188 -74 1521 176 17 0 chrX 129265087 129265364 -47708776 + MER58B DNA MER1_type 19 313 -28 221 234 21 0 chrX 129265884 129265931 -47708209 - MIR3 SINE MIR 0 208 161 1779 161 26 23 chrX 129267067 129267371 -47706769 - AluJb SINE Alu -3 309 5 461 283 61 11 chrX 129267966 129268146 -47705994 - MIR SINE MIR 0 262 74 2182 126 0 0 chrX 129268184 129268486 -47705654 + AluSx SINE Alu 1 302 -10 882 91 0 0 chrX 129270585 129270695 -47703445 - AluSg/x SINE Alu -18 291 182 1974 157 51 17 chrX 129270800 129271156 -47702984 - THE1C LTR MaLR 0 375 8 3654 115 55 14 chrX 129271324 129271830 -47702310 - MER1A DNA MER1_type 0 527 1 431 321 59 11 chrX 129272005 129272192 -47701948 - MIR SINE MIR -13 249 54 1851 158 3 31 chrX 129272211 129272528 -47701612 + AluJb SINE Alu 1 308 -4 279 71 74 5 chrX 129272804 129272858 -47701282 + AluJb SINE Alu 69 113 -189 361 322 72 20 chrX 129272883 129273035 -47701105 - L2 LINE L2 -4 3268 3109 252 299 73 73 chrX 129273458 129273662 -47700478 + MIR3 SINE MIR 3 206 -2 2311 104 0 3 chrX 129273864 129274163 -47699977 - AluSx SINE Alu -14 298 1 513 234 101 28 chrX 129275806 129275984 -47698156 - MIR SINE MIR -27 235 48 1745 179 0 10 chrX 129275984 129276280 -47697860 + AluJb SINE Alu 1 293 -19 513 234 101 28 chrX 129276280 129276316 -47697824 - MIR SINE MIR -214 48 16 186 167 62 62 chrX 129276426 129276474 -47697666 + MER5A DNA MER1_type 87 134 -55 936 140 29 12 chrX 129276551 129276722 -47697418 + L1MB5 LINE L1 5823 5996 -178 219 263 81 90 chrX 129277013 129277168 -47696972 + MIR SINE MIR 34 188 -74 1765 176 0 7 chrX 129277168 129277288 -47696852 + AluJb SINE Alu 1 120 -192 270 0 0 0 chrX 129277288 129277318 -47696822 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1765 176 0 7 chrX 129277318 129277498 -47696642 + AluJb SINE Alu 120 299 -13 219 263 81 90 chrX 129277498 129277523 -47696617 + MIR SINE MIR 188 212 -50 206 305 105 29 chrX 129278422 129278527 -47695613 + L2 LINE L2 3133 3245 -27 2424 103 3 0 chrX 129278533 129278844 -47695296 + AluSx SINE Alu 1 312 0 2428 172 32 2 chrX 129278963 129279406 -47694734 + L1MB7 LINE L1 5721 6176 -8 1092 180 0 44 chrX 129279896 129280102 -47694038 - AluJo SINE Alu -16 296 100 1682 143 36 63 chrX 129280732 129281033 -47693107 - AluJo SINE Alu -19 293 1 15937 122 12 16 chrX 129281367 129283772 -47690368 - Tigger1 DNA MER2_type 0 2418 24 2055 110 0 3 chrX 129283990 129284272 -47689868 - AluSx SINE Alu -18 294 14 2250 98 0 3 chrX 129284301 129284588 -47689552 + AluSg SINE Alu 1 286 -24 884 87 27 0 chrX 129284588 129284737 -47689403 + (TA)n Simple_repeat Simple_repeat 2 154 0 2124 104 7 14 chrX 129284971 129285268 -47688872 + AluSq SINE Alu 1 295 -18 303 173 0 0 chrX 129285365 129285417 -47688723 - MADE1 DNA Mariner 0 80 29 913 185 30 20 chrX 129285714 129285946 -47688194 - MIR SINE MIR -2 260 20 229 288 82 14 chrX 129285947 129286020 -47688120 - MIR SINE MIR -115 93 16 507 259 16 111 chrX 129287242 129287296 -47686844 - MER5B DNA MER1_type -6 172 114 1914 122 0 0 chrX 129287296 129287558 -47686582 + AluSx SINE Alu 14 275 -37 249 33 0 0 chrX 129287563 129287593 -47686547 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 507 259 16 111 chrX 129287593 129287721 -47686419 - MER5B DNA MER1_type -68 110 2 351 299 43 85 chrX 129288606 129288817 -47685323 - MIR SINE MIR -10 252 51 291 317 85 25 chrX 129288910 129289109 -47685031 + L2 LINE L2 1776 1986 -1328 432 283 184 37 chrX 129289109 129289572 -47684568 + L2 LINE L2 2170 2700 -614 401 243 72 40 chrX 129289674 129289826 -47684314 - MER103 DNA DNA -7 159 3 2235 121 43 35 chrX 129289971 129290343 -47683797 + THE1C LTR MaLR 1 375 0 266 306 92 48 chrX 129290352 129290581 -47683559 + L2 LINE L2 2845 3083 -189 569 237 23 40 chrX 129291128 129291305 -47682835 - MIR SINE MIR -10 252 79 * 847 276 9 4 chrX 129291294 129291519 -47682621 + MIR SINE MIR 36 261 -1 965 240 13 40 chrX 129291926 129292187 -47681953 + MIR SINE MIR 7 259 -3 2067 94 0 22 chrX 129293209 129293518 -47680622 + AluSg SINE Alu 21 323 0 213 317 0 0 chrX 129293872 129293932 -47680208 + L2 LINE L2 3213 3272 0 2261 95 0 49 chrX 129294146 129294473 -47679667 + AluSx SINE Alu 1 311 -1 242 276 172 35 chrX 129294564 129294680 -47679460 - L2 LINE L2 -3 3310 3179 1080 167 18 59 chrX 129294683 129294905 -47679235 - MER20 DNA MER1_type -6 213 1 2048 135 0 0 chrX 129296912 129297209 -47676931 + AluSx SINE Alu 1 297 -15 435 225 56 0 chrX 129297683 129297772 -47676368 + L2 LINE L2 3194 3287 -26 3836 193 18 7 chrX 129297883 129298600 -47675540 - L1MB7 LINE L1 0 6184 5460 273 105 76 9 chrX 129298632 129298737 -47675403 + (TA)n Simple_repeat Simple_repeat 1 112 0 361 224 48 0 chrX 129298775 129298976 -47675164 + (TA)n Simple_repeat Simple_repeat 1 210 0 371 90 62 62 chrX 129298978 129299155 -47674985 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 242 220 45 40 chrX 129299225 129299402 -47674738 + (TTATA)n Simple_repeat Simple_repeat 3 180 0 340 225 99 21 chrX 129300533 129300675 -47673465 - L1ME4a LINE L1 -3 6118 5966 250 259 0 0 chrX 129300691 129300749 -47673391 - L2 LINE L2 -1 3271 3214 411 236 70 25 chrX 129300858 129301015 -47673125 - L1ME4a LINE L1 -249 5872 5709 282 294 22 0 chrX 129301050 129301142 -47672998 - L1ME4a LINE L1 -503 5618 5525 317 294 42 50 chrX 129301447 129301566 -47672574 - L2 LINE L2 -14 3258 3141 * 581 297 66 42 chrX 129301553 129301802 -47672338 + MIR SINE MIR 8 262 0 253 183 117 0 chrX 129303311 129303371 -47670769 + MIR SINE MIR 120 186 -76 2029 118 4 0 chrX 129303537 129303807 -47670333 - AluSx SINE Alu -10 302 32 573 272 64 30 chrX 129303939 129304174 -47669966 + MIR SINE MIR 6 248 -14 450 121 0 0 chrX 129304195 129304261 -47669879 + AluJo SINE Alu 2 67 -245 1426 164 22 0 chrX 129304437 129304668 -47669472 + AluJo SINE Alu 59 294 -18 683 251 23 41 chrX 129304874 129305093 -47669047 + MIR SINE MIR 34 248 -14 728 158 9 7 chrX 129305208 129305336 -47668804 + MSTA LTR MaLR 319 428 0 483 259 22 32 chrX 129305725 129305910 -47668230 - MER5A DNA MER1_type 0 189 7 598 265 118 5 chrX 129305924 129306128 -47668012 + MIR SINE MIR 36 262 0 1886 160 20 0 chrX 129306142 129306448 -47667692 + AluJo SINE Alu 1 312 0 219 69 0 0 chrX 129306457 129306486 -47667654 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 274 20 0 chrX 129307413 129307464 -47666676 - MIR3 SINE MIR -2 206 155 474 294 29 0 chrX 129307585 129307721 -47666419 + MIR3 SINE MIR 48 187 -21 181 250 10 94 chrX 129308558 129308654 -47665486 - MIR SINE MIR -50 212 125 718 271 78 12 chrX 129308798 129309042 -47665098 - MIR SINE MIR -1 261 2 222 346 77 0 chrX 129309557 129309661 -47664479 - L2 LINE L2 -14 3258 3147 456 241 6 98 chrX 129309832 129310006 -47664134 - MIR SINE MIR 0 262 105 2649 105 16 0 chrX 129311298 129311661 -47662479 - THE1C LTR MaLR -6 369 1 762 226 97 18 chrX 129311847 129312073 -47662067 + MIR SINE MIR 18 261 -1 195 42 0 0 chrX 129312103 129312127 -47662013 + (TTG)n Simple_repeat Simple_repeat 1 24 0 917 177 16 5 chrX 129312207 129312393 -47661747 - L1MB5 LINE L1 0 6174 5987 191 183 0 100 chrX 129313540 129313600 -47660540 - MER5A DNA MER1_type 0 189 136 324 0 0 0 chrX 129315036 129315072 -47659068 + (CA)n Simple_repeat Simple_repeat 2 37 0 238 318 0 0 chrX 129315087 129315175 -47658965 + GA-rich Low_complexity Low_complexity 1 88 0 293 105 53 0 chrX 129315999 129316056 -47658084 + MER96B DNA MER1_type? 49 108 -309 645 149 132 16 chrX 129316058 129316179 -47657961 - FAM SINE Alu -20 165 31 307 173 13 0 chrX 129316179 129316254 -47657886 - MER96B DNA MER1_type? -97 320 245 3173 175 91 69 chrX 129316416 129316786 -47657354 + L1MC3 LINE L1 6710 7070 -715 278 241 0 47 chrX 129316786 129316881 -47657259 + MLT1F1 LTR MaLR 42 147 -402 1882 159 7 0 chrX 129316881 129317170 -47656970 + AluJb SINE Alu 1 291 -21 2337 88 3 3 chrX 129317177 129317474 -47656666 + AluY SINE Alu 1 297 -14 3173 175 91 69 chrX 129317474 129318053 -47656087 + L1MC3 LINE L1 7075 7785 0 504 207 0 0 chrX 129318054 129318141 -47655999 - MER96B DNA MER1_type? -330 87 1 2418 96 40 8 chrX 129318194 129318547 -47655593 - THE1B LTR MaLR 0 364 1 2308 118 0 0 chrX 129319399 129319703 -47654437 - AluSx SINE Alu -8 304 1 422 312 124 9 chrX 129319794 129320012 -47654128 + MIR SINE MIR 19 261 -1 186 43 0 0 chrX 129321525 129321548 -47652592 + (T)n Simple_repeat Simple_repeat 1 23 0 187 311 0 16 chrX 129321598 129321659 -47652481 - L2 LINE L2 -4 3268 3209 220 167 0 0 chrX 129322774 129322816 -47651324 - L2 LINE L2 -257 3056 3015 1606 162 0 82 chrX 129322964 129323279 -47650861 + AluJo SINE Alu 1 289 -23 619 262 16 22 chrX 129324167 129324350 -47649790 - MIR3 SINE MIR -1 207 26 496 295 137 13 chrX 129324671 129324898 -47649242 + L2 LINE L2 3012 3266 -6 513 67 0 112 chrX 129325346 129325386 -47648754 + MADE1 DNA Mariner 1 27 -53 2280 40 62 4 chrX 129325386 129325661 -47648479 - AluY SINE Alu -20 291 1 513 67 0 112 chrX 129325661 129325709 -47648431 + MADE1 DNA Mariner 27 79 -1 299 233 165 19 chrX 129326030 129326133 -47648007 + MER5B DNA MER1_type 61 178 0 840 109 7 41 chrX 129326496 129326508 -47647632 + L1PA16 LINE L1 6024 6035 -131 2117 142 3 0 chrX 129326508 129326810 -47647330 + AluSx SINE Alu 1 303 -9 840 109 7 41 chrX 129326810 129326944 -47647196 + L1PA16 LINE L1 6035 6165 -1 590 284 5 30 chrX 129327576 129327773 -47646367 + MIR SINE MIR 63 254 -8 1455 171 3 69 chrX 129327805 129328133 -47646007 + AluJo SINE Alu 1 308 0 420 234 225 34 chrX 129328151 129328360 -47645780 + MIR SINE MIR 13 261 -1 468 244 67 28 chrX 129328581 129328761 -47645379 - L3 LINE CR1 -627 950 764 263 337 124 18 chrX 129329427 129329596 -47644544 + MIR3 SINE MIR 16 202 -6 402 264 70 27 chrX 129329904 129330076 -47644064 - MIR SINE MIR -30 232 48 372 305 22 76 chrX 129330170 129330312 -47643828 - MIR SINE MIR -61 147 33 2032 122 61 7 chrX 129330312 129330608 -47643532 + AluSx SINE Alu 1 312 0 372 305 22 76 chrX 129330608 129330638 -47643502 - MIR SINE MIR -175 33 3 802 289 62 48 chrX 129331574 129332134 -47642006 + L1ME4a LINE L1 5332 5899 -222 2158 116 0 0 chrX 129332163 129332448 -47641692 - AluSx SINE Alu -14 298 14 296 275 56 44 chrX 129332541 129332701 -47641439 - L3 LINE CR1 -2 1575 1414 273 205 86 76 chrX 129332783 129332944 -47641196 - MIR SINE MIR -72 190 29 360 256 50 16 chrX 129334742 129334863 -47639277 + MIR3 SINE MIR 81 205 -3 218 179 0 0 chrX 129335134 129335173 -47638967 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 180 128 0 103 chrX 129335660 129335699 -47638441 - MIR SINE MIR -58 150 116 2124 105 0 18 chrX 129335750 129336062 -47638078 + AluSx SINE Alu 3 309 0 219 303 15 15 chrX 129337835 129337901 -47636239 - MIR SINE MIR -124 84 19 377 280 102 32 chrX 129337927 129338113 -47636027 + MIR SINE MIR 16 214 -48 237 194 0 48 chrX 129338523 129338585 -47635555 - L1MC/D LINE L1 -1893 5915 5857 246 183 197 0 chrX 129338950 129339021 -47635119 - MIR3 SINE MIR -14 194 110 2221 143 34 0 chrX 129339080 129339430 -47634710 - THE1B LTR MaLR -2 362 1 2569 72 0 0 chrX 129340020 129340327 -47633813 - AluY SINE Alu -4 307 1 232 299 205 8 chrX 129340436 129340553 -47633587 + MIR3 SINE MIR 16 155 -53 390 262 87 0 chrX 129340731 129340857 -47633283 + MIR3 SINE MIR 12 148 -60 221 275 128 37 chrX 129341725 129341834 -47632306 + MIR3 SINE MIR 42 160 -48 2249 143 59 11 chrX 129341998 129342468 -47631672 - Charlie1 DNA MER1_type 0 2761 2 214 283 0 0 chrX 129342476 129342536 -47631604 - MER91 DNA MER1_type -79 61 2 3522 159 50 17 chrX 129343612 129344289 -47629851 + L1MB5 LINE L1 5512 6209 0 443 223 71 9 chrX 129344497 129344609 -47629531 + L2 LINE L2 3154 3272 0 1954 156 25 15 chrX 129344995 129345398 -47628742 + L1MB7 LINE L1 5769 6175 -9 24 32 0 0 chrX 129345544 129345575 -47628565 + AT_rich Low_complexity Low_complexity 1 31 0 11249 140 22 17 chrX 129345575 129347717 -47626423 - L1MA2 LINE L1 0 7723 5562 2013 95 21 25 chrX 129347717 129348038 -47626102 - AluY SINE Alu 0 320 1 11249 140 22 17 chrX 129348038 129349037 -47625103 - L1MA2 LINE L1 -2161 5562 4569 647 178 11 63 chrX 129349552 129349680 -47624460 - L1MA2 LINE L1 -2939 4626 4510 2669 49 0 0 chrX 129349680 129349986 -47624154 - AluY SINE Alu -5 306 1 647 178 11 63 chrX 129349986 129350048 -47624092 - L1MA2 LINE L1 -3055 4510 4446 242 307 108 27 chrX 129350066 129350362 -47623778 + L1M4 LINE L1 3706 4025 -2121 4170 194 3 11 chrX 129350406 129351375 -47622765 - L1MA2 LINE L1 -3101 4464 3502 302 256 85 23 chrX 129352268 129352397 -47621743 + MIR SINE MIR 12 148 -114 370 293 127 27 chrX 129352562 129352712 -47621428 + MIR3 SINE MIR 30 194 -14 207 0 0 0 chrX 129353004 129353027 -47621113 + (GA)n Simple_repeat Simple_repeat 2 24 0 478 267 92 5 chrX 129353433 129353595 -47620545 + MIR SINE MIR 30 200 -56 438 271 241 10 chrX 129353598 129353805 -47620335 + MIR SINE MIR 3 257 -5 195 318 0 30 chrX 129354543 129354609 -47619531 - MIR3 SINE MIR -133 75 12 220 229 0 0 chrX 129355452 129355500 -47618640 + T-rich Low_complexity Low_complexity 3 50 0 202 322 23 23 chrX 129356260 129356347 -47617793 + MIR SINE MIR 38 124 -84 1882 159 7 3 chrX 129356438 129356740 -47617400 - AluJo SINE Alu -9 303 1 482 278 5 73 chrX 129357250 129357274 -47616866 - MIR3 SINE MIR -2 206 182 2043 112 10 20 chrX 129357274 129357568 -47616572 + AluSx SINE Alu 1 291 -21 482 278 5 73 chrX 129357568 129357748 -47616392 - MIR3 SINE MIR -26 182 16 231 359 0 0 chrX 129358565 129358668 -47615472 - MIR SINE MIR 0 262 160 2178 112 3 0 chrX 129358842 129359145 -47614995 - AluSx SINE Alu -4 308 5 356 310 18 18 chrX 129359149 129359262 -47614878 - MIR SINE MIR -113 149 37 486 297 63 11 chrX 129360320 129360495 -47613645 - MIR3 SINE MIR -2 206 23 431 214 40 71 chrX 129361374 129361500 -47612640 + L2 LINE L2 3187 3308 -5 261 0 0 0 chrX 129362051 129362080 -47612060 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 0 0 0 chrX 129363564 129363593 -47610547 + (T)n Simple_repeat Simple_repeat 1 29 0 344 265 88 10 chrX 129364621 129364723 -47609417 + MIR3 SINE MIR 61 170 -38 365 206 0 0 chrX 129365681 129365754 -47608386 - MIR3 SINE MIR -7 201 129 800 245 58 29 chrX 129366102 129366343 -47607797 + MIR SINE MIR 13 260 -2 580 307 56 44 chrX 129366477 129366669 -47607471 + L2 LINE L2 1876 2064 -1250 273 57 0 0 chrX 129366669 129366704 -47607436 + (CA)n Simple_repeat Simple_repeat 1 35 0 580 307 56 44 chrX 129366704 129366941 -47607199 + L2 LINE L2 2064 2310 -1004 186 43 0 0 chrX 129367312 129367335 -47606805 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2082 110 4 0 chrX 129367347 129367620 -47606520 - AluSq SINE Alu -39 274 1 241 275 138 37 chrX 129367845 129367954 -47606186 - L2 LINE L2 -1 3312 3193 651 291 123 4 chrX 129368964 129369072 -47605068 - L2 LINE L2 0 3313 3219 180 0 0 0 chrX 129369072 129369092 -47605048 + (TG)n Simple_repeat Simple_repeat 2 21 0 651 291 123 4 chrX 129369092 129369244 -47604896 - L2 LINE L2 -94 3219 3022 305 330 28 0 chrX 129370681 129370790 -47603350 - MIR SINE MIR -67 141 30 180 0 0 0 chrX 129371339 129371359 -47602781 + (TA)n Simple_repeat Simple_repeat 2 21 0 567 281 46 32 chrX 129372937 129373154 -47600986 - L2 LINE L2 0 3313 3094 480 233 20 20 chrX 129373165 129373311 -47600829 - MARNA DNA Mariner -202 384 239 327 298 67 0 chrX 129374028 129374132 -47600008 - L2 LINE L2 -25 3247 3137 209 210 32 32 chrX 129375294 129375356 -47598784 + (CAGAGA)n Simple_repeat Simple_repeat 5 66 0 530 215 42 84 chrX 129375357 129375548 -47598592 + MIR3 SINE MIR 2 184 -24 204 317 0 0 chrX 129375582 129375642 -47598498 + (CAGG)n Simple_repeat Simple_repeat 2 61 0 2199 273 63 10 chrX 129376813 129377577 -47596563 + L2 LINE L2 2228 3030 -283 336 353 51 57 chrX 129378940 129379311 -47594829 - L2 LINE L2 -6 3266 2898 283 307 66 22 chrX 129380616 129380753 -47593387 - MIR3 SINE MIR -21 187 45 1308 199 125 42 chrX 129381578 129381889 -47592251 + MER58B DNA MER1_type 1 337 -4 1534 112 28 0 chrX 129381900 129382115 -47592025 + MER30 DNA MER1_type 10 230 0 3152 72 0 3 chrX 129383141 129383517 -47590623 + THE1C LTR MaLR 1 375 0 2305 91 3 0 chrX 129383844 129384140 -47590000 + AluSq SINE Alu 1 297 -16 279 231 62 0 chrX 129384489 129384554 -47589586 - MARNA DNA Mariner -24 562 494 24 0 0 0 chrX 129385116 129385140 -47589000 + AT_rich Low_complexity Low_complexity 1 24 0 1222 271 117 21 chrX 129385935 129386447 -47587693 - MARNA DNA Mariner -18 568 8 282 116 0 0 chrX 129387549 129387592 -47586548 + (TA)n Simple_repeat Simple_repeat 2 44 0 243 152 0 0 chrX 129387596 129387642 -47586498 + LTR66 LTR ERVL 394 439 -171 240 35 0 0 chrX 129387649 129387678 -47586462 + (TA)n Simple_repeat Simple_repeat 2 30 0 234 0 0 0 chrX 129388755 129388781 -47585359 + (ATTG)n Simple_repeat Simple_repeat 4 29 0 1654 160 0 28 chrX 129388781 129389069 -47585071 - AluJo SINE Alu -32 280 1 847 146 0 7 chrX 129390253 129390390 -47583750 - AluJb SINE Alu -176 136 1 2220 92 3 29 chrX 129390872 129391178 -47582962 - AluSq SINE Alu -15 298 1 440 245 93 68 chrX 129391323 129391560 -47582580 + L2 LINE L2 2149 2391 -923 8839 72 3 8 chrX 129391577 129392654 -47581486 + MER11C LTR ERVK 1 1071 0 1742 177 3 10 chrX 129393533 129393821 -47580319 - AluJo SINE Alu -26 286 1 853 240 34 0 chrX 129395114 129395293 -47578847 + MER5A DNA MER1_type 1 185 -4 261 319 31 126 chrX 129395438 129395692 -47578448 + L2 LINE L2 3043 3272 0 221 298 255 11 chrX 129397506 129397600 -47576540 - MIR3 SINE MIR -52 156 40 390 324 19 0 chrX 129398505 129398613 -47575527 - MER117 DNA MER1_type 0 197 88 2181 92 0 47 chrX 129401058 129401375 -47572765 - AluSg SINE Alu -8 302 1 198 0 0 0 chrX 129402546 129402568 -47571572 + (GA)n Simple_repeat Simple_repeat 1 22 0 294 273 11 23 chrX 129402853 129402941 -47571199 - L2 LINE L2 0 3272 3186 428 306 29 24 chrX 129405233 129405403 -47568737 - MIR SINE MIR 0 262 92 280 306 99 18 chrX 129405477 129405588 -47568552 - L2 LINE L2 -16 3256 3137 316 303 15 38 chrX 129406431 129406563 -47567577 - MIR SINE MIR -64 144 16 2262 110 3 0 chrX 129407584 129407885 -47566255 + AluY SINE Alu 1 302 -9 250 216 0 0 chrX 129408091 129408142 -47565998 + (TG)n Simple_repeat Simple_repeat 2 52 0 421 254 17 39 chrX 129408730 129408905 -47565235 + MIR SINE MIR 20 261 -1 189 107 0 0 chrX 129409598 129409626 -47564514 + (TC)n Simple_repeat Simple_repeat 1 28 0 2827 203 46 39 chrX 129409708 129409895 -47564245 - L1M4 LINE L1 -1253 4893 4709 1261 153 280 4 chrX 129409895 129410131 -47564009 - AluJo SINE Alu -1 301 1 2827 203 46 39 chrX 129410131 129410724 -47563416 - L1M4 LINE L1 -1432 4714 4107 2259 127 26 32 chrX 129410724 129411101 -47563039 + THE1C LTR MaLR 1 375 0 477 311 120 0 chrX 129411463 129411630 -47562510 + MIR SINE MIR 3 189 -73 650 268 87 28 chrX 129411632 129411919 -47562221 - L2 LINE L2 -1 3312 3009 184 296 0 0 chrX 129411924 129411978 -47562162 + MIR SINE MIR 183 236 -26 530 292 124 6 chrX 129412003 129412181 -47561959 - MIR SINE MIR -13 249 51 457 300 23 31 chrX 129413159 129413331 -47560809 - MIR SINE MIR -64 198 30 493 200 0 36 chrX 129413526 129413636 -47560504 - MIR SINE MIR 0 262 157 706 38 0 0 chrX 129414073 129414153 -47559987 + MADE1 DNA Mariner 1 80 0 197 301 97 39 chrX 129414724 129414827 -47559313 - L2 LINE L2 -21 3251 3143 1461 152 82 0 chrX 129415189 129415432 -47558708 + L1PB3 LINE L1 5890 6152 -2 23 0 0 0 chrX 129415432 129415455 -47558685 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chrX 129416104 129416128 -47558012 + AT_rich Low_complexity Low_complexity 1 24 0 430 188 47 0 chrX 129416368 129416453 -47557687 + MIR SINE MIR 77 165 -97 242 284 0 0 chrX 129416680 129416747 -47557393 - L2 LINE L2 0 3313 3247 1444 206 26 53 chrX 129417562 129417963 -47556177 - L1ME3 LINE L1 -4 6284 5942 368 307 36 15 chrX 129418228 129418365 -47555775 + MIR3 SINE MIR 33 172 -36 1562 178 38 17 chrX 129420826 129421118 -47553022 + AluJo SINE Alu 1 298 -14 279 0 0 0 chrX 129421120 129421151 -47552989 + (GA)n Simple_repeat Simple_repeat 2 32 0 458 256 199 38 chrX 129421900 129422020 -47552120 + MIR SINE MIR 15 114 -148 2328 104 0 0 chrX 129422020 129422317 -47551823 - AluSx SINE Alu -15 297 1 458 256 199 38 chrX 129422317 129422407 -47551733 + MIR SINE MIR 114 259 -3 775 265 80 32 chrX 129423785 129424034 -47550106 - MIR SINE MIR 0 262 2 2861 105 6 0 chrX 129424807 129425169 -47548971 + THE1B LTR MaLR 1 364 0 1040 171 0 12 chrX 129425335 129425505 -47548635 - AluJb SINE Alu -8 304 137 192 191 24 24 chrX 129425506 129425548 -47548592 - L3 LINE CR1 -25 1552 1511 247 282 137 46 chrX 129425806 129425937 -47548203 + MIR SINE MIR 1 143 -119 527 319 2 15 chrX 129427381 129427552 -47546588 + MIR SINE MIR 20 183 -63 488 237 7 0 chrX 129427608 129427760 -47546380 + CT-rich Low_complexity Low_complexity 2 154 0 422 305 63 29 chrX 129428219 129428393 -47545747 + MIR3 SINE MIR 18 197 -11 562 194 144 7 chrX 129430217 129430356 -47543784 - MIR SINE MIR -73 189 32 1829 130 28 46 chrX 129430385 129430447 -47543693 + L1PA16 LINE L1 5847 5909 -257 2231 119 0 10 chrX 129430447 129430757 -47543383 + AluSx SINE Alu 2 308 -4 1829 130 28 46 chrX 129430757 129431018 -47543122 + L1PA16 LINE L1 5909 6164 -2 1479 151 57 22 chrX 129431018 129431340 -47542800 - MER33 DNA MER1_type -15 309 1 238 269 30 0 chrX 129431521 129431588 -47542552 + L2 LINE L2 2985 3053 -219 189 304 18 0 chrX 129432353 129432409 -47541731 + MIR SINE MIR 82 138 -70 349 316 36 42 chrX 129433362 129433530 -47540610 - MARNA DNA Mariner -8 578 412 329 299 88 46 chrX 129433368 129433562 -47540578 + MARNA DNA Mariner 15 216 -370 * 484 45 110 0 chrX 129433910 129434161 -47539979 + (TA)n Simple_repeat Simple_repeat 1 278 0 925 201 49 27 chrX 129434597 129434781 -47539359 - MER5A DNA MER1_type 0 189 2 386 248 87 44 chrX 129434839 129435045 -47539095 + MIR SINE MIR 20 234 -28 420 215 20 94 chrX 129435224 129435373 -47538767 + MIR3 SINE MIR 70 207 -1 764 311 71 74 chrX 129435694 129436032 -47538108 - L2 LINE L2 -4 3268 2932 984 185 26 21 chrX 129436096 129436285 -47537855 - MER20 DNA MER1_type 0 219 30 204 307 158 33 chrX 129436358 129436720 -47537420 - L2 LINE L2 -476 2838 2432 2298 178 13 3 chrX 129436794 129437171 -47536969 - MER70A LTR ERVL -4 468 88 1034 166 0 0 chrX 129437164 129437321 -47536819 - MER70A LTR ERVL -310 162 6 * 676 289 248 18 chrX 129437610 129438171 -47535969 + L3 LINE CR1 576 1265 -312 225 278 176 0 chrX 129438223 129438331 -47535809 + L2 LINE L2 2208 2334 -980 435 350 128 31 chrX 129438385 129438796 -47535344 + L2 LINE L2 2546 3044 -228 2036 140 3 7 chrX 129438796 129439096 -47535044 - AluJb SINE Alu -11 301 3 435 350 128 31 chrX 129439096 129439319 -47534821 + L2 LINE L2 3044 3244 -28 1840 147 7 0 chrX 129440956 129441228 -47532912 - AluSx SINE Alu -38 274 1 260 326 72 29 chrX 129441326 129441464 -47532676 - L2 LINE L2 -230 3042 2899 264 333 0 22 chrX 129443458 129443596 -47530544 + (CCCGAA)n Simple_repeat Simple_repeat 1 135 0 2565 115 16 16 chrX 129446368 129446743 -47527397 - THE1C LTR MaLR 0 375 1 1089 211 24 0 chrX 129447711 129447924 -47526216 + MER58A DNA MER1_type 4 221 -3 237 246 18 18 chrX 129448055 129448112 -47526028 - L2 LINE L2 -16 3256 3200 301 269 83 28 chrX 129448275 129448383 -47525757 - HAL1b LINE L1 -29 1319 1206 1125 226 9 0 chrX 129448626 129448847 -47525293 + MIR SINE MIR 16 238 -24 1622 184 14 3 chrX 129448852 129449135 -47525005 - AluJo SINE Alu -10 302 17 258 81 0 0 chrX 129449892 129449929 -47524211 + (A)n Simple_repeat Simple_repeat 1 37 0 1896 141 3 48 chrX 129450525 129450837 -47523303 + AluJb SINE Alu 1 298 -14 249 333 0 20 chrX 129451063 129451165 -47522975 + MER5A DNA MER1_type 7 106 -83 1162 163 16 0 chrX 129451166 129451356 -47522784 - AluJo SINE Alu -119 193 1 228 255 0 0 chrX 129451916 129451967 -47522173 - MIR SINE MIR -12 250 200 978 128 0 8 chrX 129452069 129452202 -47521938 - FLAM_C SINE Alu -1 132 1 418 243 0 9 chrX 129452202 129452313 -47521827 - MIR SINE MIR -62 200 91 572 248 83 23 chrX 129452381 129452599 -47521541 - L1MC5 LINE L1 -37 7924 7694 435 294 66 7 chrX 129452617 129452753 -47521387 - MIR SINE MIR -98 164 21 482 179 0 12 chrX 129453514 129453598 -47520542 - MIR SINE MIR -85 123 41 881 291 0 13 chrX 129453716 129453950 -47520190 + MIR SINE MIR 6 236 -26 204 295 49 44 chrX 129454674 129454857 -47519283 + L2 LINE L2 2791 2974 -340 231 270 16 0 chrX 129454912 129454975 -47519165 + (CA)n Simple_repeat Simple_repeat 2 65 0 357 276 39 31 chrX 129454979 129455106 -47519034 + L2 LINE L2 2981 3108 -164 183 297 77 66 chrX 129455287 129455378 -47518762 + L2 LINE L2 3137 3228 -44 657 268 87 65 chrX 129455398 129455719 -47518421 - L2 LINE L2 0 3313 2986 593 170 0 0 chrX 129455769 129455869 -47518271 - Tigger7 DNA MER2_type 0 2587 2488 * 1448 203 4 4 chrX 129455866 129456132 -47518008 - Tigger7 DNA MER2_type -466 267 2 224 309 88 59 chrX 129456709 129456845 -47517295 + L2 LINE L2 3125 3264 -8 1784 219 99 48 chrX 129456973 129457533 -47516607 - MLT2F LTR ERVL 0 663 66 2271 125 0 0 chrX 129457533 129457845 -47516295 + AluSx SINE Alu 1 312 0 1784 219 99 48 chrX 129457845 129457910 -47516230 - MLT2F LTR ERVL -597 66 6 327 49 0 0 chrX 129458471 129458512 -47515628 + (CA)n Simple_repeat Simple_repeat 1 41 0 1383 148 0 31 chrX 129459230 129459459 -47514681 - AluJo SINE Alu -84 228 7 483 274 100 69 chrX 129459553 129460134 -47514006 + L1MC4a LINE L1 5259 5857 -1951 21 57 0 0 chrX 129460353 129460388 -47513752 + AT_rich Low_complexity Low_complexity 1 35 0 216 378 75 58 chrX 129461625 129462268 -47511872 - L3 LINE CR1 -867 710 57 270 56 0 0 chrX 129462371 129462407 -47511733 + (TG)n Simple_repeat Simple_repeat 2 37 0 282 272 40 16 chrX 129463103 129463255 -47510885 - MIR SINE MIR 0 262 61 323 43 0 22 chrX 129463396 129463442 -47510698 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 1074 93 6 12 chrX 129463442 129463614 -47510526 + (TTTC)n Simple_repeat Simple_repeat 3 173 0 2085 108 4 0 chrX 129463614 129463892 -47510248 - AluSq SINE Alu -34 279 1 500 279 126 42 chrX 129463969 129464354 -47509786 - L1ME4a LINE L1 -125 5996 5571 234 368 104 41 chrX 129464840 129465109 -47509031 + L2 LINE L2 2632 2917 -397 484 298 132 19 chrX 129465147 129465352 -47508788 + MIR SINE MIR 22 249 -13 338 283 87 29 chrX 129465392 129465530 -47508610 + L2 LINE L2 2919 3064 -208 2193 70 3 0 chrX 129465643 129465929 -47508211 - L1PA7 LINE L1 -1 6153 5867 305 269 96 0 chrX 129466181 129466285 -47507855 - MIR SINE MIR -72 190 77 888 221 10 5 chrX 129466417 129466612 -47507528 + MER68 LTR ERV1 297 492 -70 1024 223 0 5 chrX 129466645 129466851 -47507289 + MIR SINE MIR 58 262 0 354 286 14 41 chrX 129467334 129467481 -47506659 - L1ME4a LINE L1 -180 5941 5799 198 228 0 18 chrX 129467629 129467686 -47506454 - L3 LINE CR1 -871 706 651 333 289 28 7 chrX 129467798 129467940 -47506200 + LTR16B LTR ERVL 320 464 0 404 276 250 0 chrX 129468353 129468509 -47505631 - MIR SINE MIR 0 262 68 2253 99 7 3 chrX 129468526 129468828 -47505312 + AluSc SINE Alu 1 303 -6 394 292 135 28 chrX 129470029 129470207 -47503933 - MIR SINE MIR -7 255 59 461 198 8 58 chrX 129470581 129470702 -47503438 - L2 LINE L2 -4 3309 3195 284 217 16 124 chrX 129470692 129470821 -47503319 + L2 LINE L2 3106 3220 -93 * 327 210 121 81 chrX 129471329 129471453 -47502687 + L2 LINE L2 3181 3309 -4 624 193 25 79 chrX 129471796 129471963 -47502177 - L1ME3A LINE L1 -216 6023 5867 2039 147 0 0 chrX 129471963 129472255 -47501885 + AluJb SINE Alu 1 292 -20 624 193 25 79 chrX 129472255 129472289 -47501851 - L1ME3A LINE L1 -372 5867 5833 205 296 25 0 chrX 129472289 129472370 -47501770 + (CAT)n Simple_repeat Simple_repeat 1 83 0 691 298 51 0 chrX 129472370 129472685 -47501455 - L1ME3A LINE L1 -414 5817 5487 575 259 78 81 chrX 129472671 129473117 -47501023 - L1MEc LINE L1 -3195 3020 2574 * 1815 160 42 3 chrX 129473117 129473404 -47500736 - AluJo SINE Alu -14 298 1 575 259 78 81 chrX 129473404 129473998 -47500142 - L1MEc LINE L1 -3641 2574 2030 514 325 117 35 chrX 129475183 129475611 -47498529 - L1ME4a LINE L1 -107 6014 5552 1170 185 92 69 chrX 129475616 129475814 -47498326 + MER2 DNA MER2_type 1 193 -151 1899 169 7 0 chrX 129475814 129476110 -47498030 - AluJb SINE Alu -14 298 1 1170 185 92 69 chrX 129476110 129476167 -47497973 + MER2 DNA MER2_type 193 247 -97 2122 92 37 17 chrX 129476167 129476462 -47497678 - AluSq SINE Alu -11 302 2 1170 185 92 69 chrX 129476462 129476540 -47497600 + MER2 DNA MER2_type 247 343 -1 392 323 47 16 chrX 129476628 129476755 -47497385 - L2 LINE L2 -3 3269 3139 25 0 0 0 chrX 129477347 129477372 -47496768 + AT_rich Low_complexity Low_complexity 1 25 0 686 288 38 25 chrX 129477476 129477712 -47496428 + MIR SINE MIR 20 258 -4 202 278 0 42 chrX 129478100 129478172 -47495968 - MIR3 SINE MIR -16 192 124 204 243 0 29 chrX 129479386 129479456 -47494684 + A-rich Low_complexity Low_complexity 3 70 0 333 0 0 0 chrX 129479977 129480014 -47494126 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 381 214 14 0 chrX 129480014 129480084 -47494056 - L2 LINE L2 -13 3259 3189 185 184 0 26 chrX 129480578 129480616 -47493524 - MIR3 SINE MIR -4 204 168 557 278 148 0 chrX 129480626 129480788 -47493352 + MER5A DNA MER1_type 4 189 0 209 277 0 31 chrX 129480993 129481058 -47493082 - MIR SINE MIR -103 105 43 424 283 36 36 chrX 129482922 129483060 -47491080 + MER5A DNA MER1_type 4 141 -48 539 189 37 100 chrX 129483142 129483195 -47490945 + MER5B DNA MER1_type 1 56 -122 267 31 0 0 chrX 129483195 129483227 -47490913 + (CA)n Simple_repeat Simple_repeat 2 33 0 539 189 37 100 chrX 129483227 129483363 -47490777 + MER5B DNA MER1_type 56 178 0 254 295 189 0 chrX 129483502 129483597 -47490543 - L2 LINE L2 -19 3294 3182 2850 167 18 2 chrX 129485040 129485590 -47488550 - L1MB7 LINE L1 -34 6150 5592 390 268 235 28 chrX 129486176 129486389 -47487751 - MIR SINE MIR -3 259 3 689 328 79 65 chrX 129486703 129487133 -47487007 + L2 LINE L2 2837 3272 0 473 258 184 24 chrX 129487146 129487370 -47486770 - MIR SINE MIR -6 256 2 29 0 0 0 chrX 129487590 129487619 -47486521 + AT_rich Low_complexity Low_complexity 1 29 0 1648 166 28 18 chrX 129487619 129487903 -47486237 - AluJo SINE Alu -25 287 1 216 265 0 0 chrX 129489302 129489351 -47484789 - L2 LINE L2 0 3313 3265 2502 254 38 3 chrX 129490459 129491347 -47482793 + L1ME4a LINE L1 3065 3983 -2163 777 42 0 0 chrX 129491668 129491764 -47482376 + U6 snRNA snRNA 1 96 -11 353 225 183 42 chrX 129493212 129493425 -47480715 + L1ME4a LINE L1 5602 5844 -277 24 53 0 0 chrX 129493429 129493467 -47480673 + AT_rich Low_complexity Low_complexity 1 38 0 2137 127 0 10 chrX 129493511 129493811 -47480329 - AluJo SINE Alu -9 303 7 2493 151 29 12 chrX 129493830 129493869 -47480271 - L1MA9 LINE L1 -38 6274 6237 410 63 0 16 chrX 129493869 129493932 -47480208 + (TA)n Simple_repeat Simple_repeat 1 62 0 2493 151 29 12 chrX 129493932 129494377 -47479763 - L1MA9 LINE L1 -75 6237 5782 257 182 91 0 chrX 129494490 129494567 -47479573 + L1MC4 LINE L1 7959 8042 0 327 338 115 44 chrX 129495124 129495604 -47478536 - L1MB7 LINE L1 -748 5398 4885 2307 91 0 3 chrX 129495673 129495970 -47478170 + AluSx SINE Alu 1 296 -16 318 292 36 78 chrX 129496265 129496457 -47477683 + MIR3 SINE MIR 19 202 -6 2044 144 0 0 chrX 129497311 129497616 -47476524 - AluSx SINE Alu -7 305 1 455 320 26 20 chrX 129498033 129498186 -47475954 - MIR SINE MIR -74 188 35 727 275 48 10 chrX 129498551 129498758 -47475382 - MIR SINE MIR -1 261 47 1215 208 29 39 chrX 129499194 129499473 -47474667 + MLT2B1 LTR ERVL 69 344 -176 2305 109 2 128 chrX 129499491 129499959 -47474181 + MLT2A2 LTR ERVL 1 409 -44 344 22 0 0 chrX 129499959 129500004 -47474136 - MLT2A2 LTR ERVL -10 443 399 350 187 56 75 chrX 129500008 129500115 -47474025 + L1MC4 LINE L1 6614 6718 -1324 201 147 0 0 chrX 129500220 129500254 -47473886 + (CA)n Simple_repeat Simple_repeat 2 35 0 368 42 0 0 chrX 129500267 129500315 -47473825 + MLT2A2 LTR ERVL 399 446 -7 297 257 0 0 chrX 129500321 129500391 -47473749 + MLT2B1 LTR ERVL 395 464 -56 306 322 0 0 chrX 129500411 129500501 -47473639 - L1MC4 LINE L1 -1339 6703 6614 * 312 296 23 0 chrX 129500455 129500543 -47473597 + L1MC4 LINE L1 6614 6703 -1339 317 111 37 0 chrX 129500571 129500625 -47473515 + MLT2B1 LTR ERVL 465 520 0 216 282 133 82 chrX 129501061 129501123 -47473017 + L2 LINE L2 2709 2766 -548 6390 183 34 18 chrX 129501123 129502552 -47471588 + Charlie1a DNA MER1_type 1 1453 -2 216 282 133 82 chrX 129502552 129502744 -47471396 + L2 LINE L2 2766 2976 -338 2351 229 38 26 chrX 129502784 129502849 -47471291 - MLT1E2 LTR MaLR 0 626 563 1822 138 3 72 chrX 129502849 129503169 -47470971 + AluSx SINE Alu 1 298 -14 2351 229 38 26 chrX 129503169 129503706 -47470434 - MLT1E2 LTR MaLR -63 563 17 609 260 44 69 chrX 129503793 129504244 -47469896 + MLT1J LTR MaLR 1 475 -36 771 237 16 21 chrX 129504277 129504463 -47469677 + L2 LINE L2 3128 3312 -1 24 53 0 0 chrX 129504986 129505024 -47469116 + AT_rich Low_complexity Low_complexity 1 38 0 209 119 24 0 chrX 129505286 129505328 -47468812 + GA-rich Low_complexity Low_complexity 2 44 0 791 208 10 35 chrX 129505950 129506147 -47467993 - L2 LINE L2 0 3313 3122 1110 187 10 38 chrX 129506876 129507085 -47467055 + AluJo SINE Alu 79 281 -31 2091 98 3 7 chrX 129509174 129509507 -47464633 + AluSq SINE Alu 1 332 0 257 269 0 13 chrX 129510795 129510873 -47463267 + GA-rich Low_complexity Low_complexity 3 79 0 346 69 35 0 chrX 129510874 129510932 -47463208 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 768 238 90 37 chrX 129511131 129511375 -47462765 - L1ME1 LINE L1 -7 6159 5903 6012 107 8 1 chrX 129511381 129512258 -47461882 + L1PA14 LINE L1 5279 6161 0 820 188 90 18 chrX 129512254 129512477 -47461663 - L1ME1 LINE L1 -235 5931 5693 * 1189 167 13 70 chrX 129512477 129512705 -47461435 - AluJo SINE Alu -14 298 84 1925 214 27 25 chrX 129512705 129513318 -47460822 - L1ME1 LINE L1 -469 5697 5087 285 249 6 99 chrX 129513343 129513524 -47460616 - L1MC4 LINE L1 0 8042 7879 888 150 0 0 chrX 129513541 129513681 -47460459 - FRAM SINE Alu -15 161 22 1116 260 128 37 chrX 129513696 129514258 -47459882 - L1MC4 LINE L1 -144 7898 7286 1368 252 49 17 chrX 129514287 129514755 -47459385 - L1MC4 LINE L1 -791 7251 6769 3352 146 23 26 chrX 129514921 129515945 -47458195 + L1M2 LINE L1 4782 5801 -499 219 69 0 0 chrX 129515946 129515975 -47458165 + (TC)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chrX 129516004 129516033 -47458107 + AT_rich Low_complexity Low_complexity 1 29 0 2820 147 30 15 chrX 129516034 129516566 -47457574 + L1MA6 LINE L1 5761 6300 0 378 319 30 7 chrX 129516609 129516744 -47457396 - MIR3 SINE MIR -4 204 67 2143 129 3 0 chrX 129516829 129517139 -47457001 - AluSx SINE Alu -1 311 1 188 344 54 0 chrX 129517750 129517843 -47456297 + L3b LINE CR1 1407 1504 -79 2768 137 13 2 chrX 129518823 129519283 -47454857 - L1MB2 LINE L1 0 6171 5707 191 412 20 0 chrX 129519730 129519832 -47454308 + MER5B DNA MER1_type 1 104 -74 2191 175 41 19 chrX 129519836 129520247 -47453893 - MSTB LTR MaLR 0 426 7 417 247 12 0 chrX 129521725 129521810 -47452330 - Tigger7 DNA MER2_type -1 2486 2401 2471 168 12 12 chrX 129521816 129522233 -47451907 - Tigger7 DNA MER2_type -2070 417 1 1086 186 6 0 chrX 129523722 129523899 -47450241 + MER45A DNA AcHobo 1 178 0 288 248 207 8 chrX 129525331 129525452 -47448688 - MIR SINE MIR -117 145 1 199 326 138 14 chrX 129525585 129525723 -47448417 + L2 LINE L2 2715 2869 -445 1779 161 8 53 chrX 129525764 129526125 -47448015 - MLT1A2 LTR MaLR 0 374 30 1895 155 0 7 chrX 129526125 129526415 -47447725 + AluJo SINE Alu 2 289 -23 363 179 17 8 chrX 129526418 129526535 -47447605 + (TA)n Simple_repeat Simple_repeat 1 118 0 249 247 326 0 chrX 129526777 129526866 -47447274 - L2 LINE L2 -5 3267 3150 281 353 104 39 chrX 129526877 129527291 -47446849 + L2 LINE L2 1730 2170 -1144 216 306 0 28 chrX 129527302 129527374 -47446766 + MER5A DNA MER1_type 14 83 -106 684 330 105 14 chrX 129527925 129528277 -47445863 - L2 LINE L2 -2365 949 566 180 323 131 65 chrX 129528450 129528679 -47445461 + L2 LINE L2 3021 3264 -8 1684 75 4 0 chrX 129528866 129529092 -47445048 + L1PA7 LINE L1 5928 6154 0 246 128 0 0 chrX 129529406 129529445 -47444695 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 351 140 0 0 chrX 129529878 129529935 -47444205 + L1MA3 LINE L1 5163 5219 -927 5478 117 24 1 chrX 129529946 129530798 -47443342 + L1MA3 LINE L1 5431 6301 -4 27 0 0 0 chrX 129530798 129530825 -47443315 + AT_rich Low_complexity Low_complexity 1 27 0 238 267 27 0 chrX 129531158 129531233 -47442907 + LTR11 LTR ERV 425 501 -183 2368 213 79 9 chrX 129531252 129531833 -47442307 + MLT1E2 LTR MaLR 1 622 -4 1809 188 49 6 chrX 129532301 129532646 -47441494 + MLT1A1 LTR MaLR 1 360 -5 7509 222 52 46 chrX 129532676 129533596 -47440544 + L1MC/D LINE L1 2902 3815 -2360 1982 123 3 7 chrX 129533596 129533911 -47440229 + AluSx SINE Alu 1 314 0 7509 222 52 46 chrX 129533911 129534511 -47439629 + L1MC/D LINE L1 3815 4410 -1765 1667 83 16 0 chrX 129534511 129534753 -47439387 + L1MA2 LINE L1 6051 6296 -8 7509 222 52 46 chrX 129534753 129535503 -47438637 + L1MC/D LINE L1 4410 5154 -1021 2544 58 7 3 chrX 129535503 129535811 -47438329 - AluY SINE Alu -2 309 1 7509 222 52 46 chrX 129535811 129535835 -47438305 + L1MC/D LINE L1 5154 5176 -999 2006 133 0 0 chrX 129535835 129536178 -47437962 - AluSx SINE Alu 0 347 5 7509 222 52 46 chrX 129536178 129536420 -47437720 + L1MC/D LINE L1 5176 5430 -745 266 296 0 11 chrX 129536448 129536596 -47437544 + A-rich Low_complexity Low_complexity 1 146 0 1501 210 96 14 chrX 129537408 129537774 -47436366 + MSTD LTR MaLR 1 396 0 758 267 93 13 chrX 129538411 129538647 -47435493 + MIR SINE MIR 8 262 0 198 0 0 0 chrX 129539344 129539366 -47434774 + (A)n Simple_repeat Simple_repeat 1 22 0 308 308 135 13 chrX 129539476 129539632 -47434508 - MIR SINE MIR -67 195 21 220 274 168 21 chrX 129540019 129540114 -47434026 + MIR3 SINE MIR 46 154 -54 2379 264 127 49 chrX 129540118 129540996 -47433144 + L1M4b LINE L1 -302 910 -5636 12300 185 11 15 chrX 129541296 129544885 -47429255 + L1PB3 LINE L1 2569 6154 0 547 216 63 23 chrX 129544881 129545091 -47429049 + L1M4b LINE L1 1328 1904 -4661 * 1006 224 21 5 chrX 129546118 129546310 -47427830 + MIR SINE MIR 4 198 -64 275 205 60 12 chrX 129546412 129546495 -47427645 - MIR SINE MIR -56 206 120 1099 43 0 0 chrX 129547291 129547430 -47426710 - L1P LINE L1 -3528 2618 2480 207 65 65 0 chrX 129547547 129547593 -47426547 + (TA)n Simple_repeat Simple_repeat 1 49 0 572 54 90 6 chrX 129547604 129547770 -47426370 + (TA)n Simple_repeat Simple_repeat 1 180 0 2641 174 16 19 chrX 129547771 129548609 -47425531 - L1M2 LINE L1 -651 5649 4808 2370 100 0 0 chrX 129549203 129549513 -47424627 + AluSx SINE Alu 1 310 -2 1989 139 3 35 chrX 129549528 129549845 -47424295 + AluSq SINE Alu 1 307 -6 273 286 143 18 chrX 129549977 129550089 -47424051 + MIR SINE MIR 32 157 -105 4095 120 3 8 chrX 129552636 129553227 -47420913 - THE1C-int LTR MaLR -18 1562 975 2605 106 18 20 chrX 129553238 129553636 -47420504 - THE1C-int LTR MaLR -1183 397 1 2224 141 19 19 chrX 129553636 129554011 -47420129 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 129554255 129554278 -47419862 + AT_rich Low_complexity Low_complexity 1 23 0 4786 102 54 20 chrX 129554458 129554475 -47419665 + MER4E LTR ERV1 1 16 -763 2237 85 13 7 chrX 129554475 129554782 -47419358 - AluY SINE Alu -2 309 1 4786 102 54 20 chrX 129554782 129555508 -47418632 + MER4E LTR ERV1 16 769 -10 213 39 0 0 chrX 129555531 129555557 -47418583 + (T)n Simple_repeat Simple_repeat 1 26 0 1032 93 33 7 chrX 129555660 129555810 -47418330 + L1PA10 LINE L1 6014 6167 -1 2394 271 73 29 chrX 129555831 129557254 -47416886 + L1M1 LINE L1 2283 3782 -3783 24 0 0 0 chrX 129557369 129557393 -47416747 + AT_rich Low_complexity Low_complexity 1 24 0 2747 158 11 2 chrX 129557393 129557861 -47416279 - L1PA16 LINE L1 -9 6157 5686 247 293 40 0 chrX 129559903 129559978 -47414162 - L2 LINE L2 -13 3300 3223 2525 114 6 3 chrX 129560317 129560668 -47413472 - THE1B LTR MaLR -12 352 1 328 285 11 38 chrX 129561304 129561343 -47412797 - L1ME4a LINE L1 -235 5886 5847 1247 207 71 71 chrX 129561343 129561739 -47412401 + MSTD LTR MaLR 1 396 0 328 285 11 38 chrX 129561739 129561885 -47412255 - L1ME4a LINE L1 -274 5847 5706 21 0 0 0 chrX 129564430 129564451 -47409689 + AT_rich Low_complexity Low_complexity 1 21 0 2273 107 0 0 chrX 129564580 129564888 -47409252 - AluSg SINE Alu 0 310 3 2302 92 11 20 chrX 129564982 129565339 -47408801 - L1MA1 LINE L1 0 6302 5949 21 0 0 0 chrX 129566098 129566119 -47408021 + AT_rich Low_complexity Low_complexity 1 21 0 302 302 244 5 chrX 129566357 129566562 -47407578 + MER102a DNA MER1_type 76 329 -1 1428 260 0 0 chrX 129566852 129567137 -47407003 + Tigger7 DNA MER2_type 1 285 -2202 25 0 0 0 chrX 129567491 129567516 -47406624 + AT_rich Low_complexity Low_complexity 1 25 0 287 167 0 37 chrX 129568060 129568114 -47406026 + L2 LINE L2 3262 3313 0 354 225 207 9 chrX 129568599 129568710 -47405430 + L2 LINE L2 3140 3272 0 700 126 0 27 chrX 129569053 129569164 -47404976 + AluJo SINE Alu 121 228 -84 21 36 0 0 chrX 129569171 129569199 -47404941 + AT_rich Low_complexity Low_complexity 1 28 0 2204 116 10 0 chrX 129569734 129570037 -47404103 + AluSg SINE Alu 1 306 -4 2232 105 3 16 chrX 129570049 129570355 -47403785 + AluSp SINE Alu 1 302 -11 2337 98 0 0 chrX 129571199 129571505 -47402635 - AluSc SINE Alu -3 306 1 253 227 15 0 chrX 129571983 129572049 -47402091 + GA-rich Low_complexity Low_complexity 2 68 0 292 254 119 17 chrX 129572090 129572208 -47401932 + MIR3 SINE MIR 38 167 -41 242 245 92 61 chrX 129572664 129572762 -47401378 + L2 LINE L2 3178 3278 -35 397 359 0 0 chrX 129572886 129573014 -47401126 - L3 LINE CR1 -127 1450 1323 2340 98 3 12 chrX 129573173 129573519 -47400621 + L1PB2 LINE L1 5807 6149 -2 1103 222 28 16 chrX 129573624 129573872 -47400268 - MIR SINE MIR -10 252 2 380 132 0 0 chrX 129574426 129574479 -47399661 + Tigger4(Zombi) DNA MER2_type 2679 2731 0 6202 192 67 28 chrX 129574492 129575348 -47398792 - L1MC4 LINE L1 -151 7891 6949 1366 194 75 24 chrX 129575348 129575642 -47398498 + AluJo SINE Alu 2 310 -2 6202 192 67 28 chrX 129575642 129576275 -47397865 - L1MC4 LINE L1 -1093 6949 6343 207 0 0 0 chrX 129576443 129576466 -47397674 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chrX 129576790 129576815 -47397325 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2582 52 3 3 chrX 129577162 129577472 -47396668 + AluY SINE Alu 2 311 0 3418 232 87 27 chrX 129577812 129579138 -47395002 - L1MC4a LINE L1 -773 5373 4902 294 309 0 12 chrX 129579170 129579251 -47394889 - MIR SINE MIR -117 145 66 * 619 244 98 138 chrX 129579237 129579674 -47394466 - L2 LINE L2 -249 3064 2659 2261 104 0 3 chrX 129579674 129579973 -47394167 + AluSx SINE Alu 1 298 -14 619 244 98 138 chrX 129579973 129580086 -47394054 - L2 LINE L2 -654 2659 2543 1538 318 40 56 chrX 129580546 129581093 -47393047 + L2 LINE L2 2231 2756 -516 849 156 104 71 chrX 129581093 129581304 -47392836 - MER20 DNA MER1_type 0 219 2 1538 318 40 56 chrX 129581304 129581622 -47392518 + L2 LINE L2 2756 3078 -194 514 296 23 89 chrX 129581695 129581952 -47392188 + MIR SINE MIR 23 262 0 450 143 0 0 chrX 129581952 129582029 -47392111 + (CTA)n Simple_repeat Simple_repeat 3 79 0 1983 165 51 14 chrX 129582280 129582631 -47391509 - THE1B LTR MaLR 0 364 1 24 32 0 0 chrX 129582771 129582802 -47391338 + AT_rich Low_complexity Low_complexity 1 31 0 1293 185 78 60 chrX 129582932 129583267 -47390873 + MLT1D LTR MaLR 21 361 -144 4013 169 68 17 chrX 129583347 129584241 -47389899 - L1MB7 LINE L1 -18 6664 5727 3168 233 24 25 chrX 129584408 129585340 -47388800 - L1MB7 LINE L1 -897 5747 4817 3357 221 20 0 chrX 129585672 129586425 -47387715 - L1MB7 LINE L1 -1817 4827 4060 5867 148 27 3 chrX 129586442 129587949 -47386191 - L1MA4 LINE L1 -7 6293 4747 1615 68 9 0 chrX 129588537 129588759 -47385381 - L1MA1 LINE L1 0 6302 6079 482 197 16 16 chrX 129588759 129588870 -47385270 - L1MA4 LINE L1 -1389 4757 4644 * 575 144 51 8 chrX 129588855 129588973 -47385167 - L1MA4 LINE L1 -1725 4421 4299 * 3636 233 21 54 chrX 129588966 129590319 -47383821 - L1MB7 LINE L1 -2555 4089 2782 253 167 0 0 chrX 129590312 129590354 -47383786 + L1M4 LINE L1 95 136 -6406 * 329 222 71 20 chrX 129590352 129590451 -47383689 - L1MB7 LINE L1 -6431 111 8 229 78 0 39 chrX 129590700 129590751 -47383389 + (TA)n Simple_repeat Simple_repeat 2 50 0 378 255 46 122 chrX 129590853 129591049 -47383091 + MIR SINE MIR 23 203 -59 837 78 78 0 chrX 129591283 129591399 -47382741 - AluSq/x SINE Alu -187 125 1 186 253 93 13 chrX 129592188 129592263 -47381877 - MIR SINE MIR -59 203 123 24 53 0 0 chrX 129592312 129592350 -47381790 + AT_rich Low_complexity Low_complexity 1 38 0 689 250 68 43 chrX 129592399 129592679 -47381461 - MARNA DNA Mariner -164 422 136 21 0 0 0 chrX 129594305 129594326 -47379814 + AT_rich Low_complexity Low_complexity 1 21 0 259 346 138 0 chrX 129594601 129594731 -47379409 - L2 LINE L2 -1 3271 3124 2219 103 3 3 chrX 129594830 129595121 -47379019 + AluSx SINE Alu 1 291 -21 225 250 0 0 chrX 129595148 129595200 -47378940 - MIR SINE MIR -69 139 88 306 209 52 35 chrX 129596274 129596389 -47377751 - MIR SINE MIR -12 250 134 6624 20 0 0 chrX 129597417 129598174 -47375966 + L1PA3 LINE L1 5396 6152 -3 231 303 15 15 chrX 129598788 129598854 -47375286 + MIR SINE MIR 46 111 -97 1190 196 45 8 chrX 129598854 129599099 -47375041 - MIR SINE MIR -7 255 2 997 135 6 0 chrX 129599433 129599603 -47374537 - L1MA5A LINE L1 0 6297 6127 793 274 82 5 chrX 129600519 129600738 -47373402 - MIR SINE MIR -21 241 6 513 250 77 13 chrX 129601237 129601393 -47372747 - MIR SINE MIR -12 250 85 233 325 0 32 chrX 129601941 129602064 -47372076 + GA-rich Low_complexity Low_complexity 3 121 0 27 0 0 0 chrX 129602241 129602268 -47371872 + AT_rich Low_complexity Low_complexity 1 27 0 314 316 132 21 chrX 129602403 129602593 -47371547 - L1ME LINE L1 -321 5800 5590 393 326 100 36 chrX 129602979 129603338 -47370802 - L1ME LINE L1 -1068 5078 4697 264 308 43 22 chrX 129603398 129603583 -47370557 - L1ME LINE L1 -1552 4594 4406 580 143 0 0 chrX 129603587 129603678 -47370462 - AluJ/FRAM SINE Alu -8 304 214 1217 161 125 11 chrX 129603764 129604043 -47370097 + L1MC1 LINE L1 6023 6333 0 511 299 173 30 chrX 129604054 129604452 -47369688 - L1ME LINE L1 -1955 4191 3737 521 291 159 9 chrX 129604541 129604768 -47369372 + MIR SINE MIR 2 262 0 392 55 18 0 chrX 129606088 129606143 -47367997 + (TTC)n Simple_repeat Simple_repeat 2 57 0 1882 107 92 0 chrX 129606141 129606438 -47367702 - AluSx SINE Alu 0 321 1 340 284 128 94 chrX 129608801 129609270 -47364870 - L1M2 LINE L1 -5919 930 446 183 184 0 0 chrX 129609750 129609788 -47364352 + (CTG)n Simple_repeat Simple_repeat 1 38 0 288 153 28 14 chrX 129609983 129610055 -47364085 + CT-rich Low_complexity Low_complexity 3 75 0 246 32 0 0 chrX 129610450 129610481 -47363659 + (CTAG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chrX 129611515 129611542 -47362598 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 222 319 106 0 chrX 129611892 129611986 -47362154 + L2 LINE L2 3153 3256 -16 291 54 0 0 chrX 129613724 129613761 -47360379 + (TG)n Simple_repeat Simple_repeat 2 38 0 283 180 0 0 chrX 129614289 129614339 -47359801 + L2 LINE L2 3222 3271 -1 22 0 0 0 chrX 129614682 129614704 -47359436 + AT_rich Low_complexity Low_complexity 1 22 0 2747 122 25 0 chrX 129616316 129616759 -47357381 - L1MA5 LINE L1 -3 6297 5844 23 54 0 0 chrX 129619196 129619233 -47354907 + AT_rich Low_complexity Low_complexity 1 37 0 2231 115 3 0 chrX 129619413 129619718 -47354422 - AluSx SINE Alu -6 306 1 622 279 31 24 chrX 129619901 129620155 -47353985 - MER112 DNA MER1_type -4 256 1 29 0 0 0 chrX 129622433 129622462 -47351678 + AT_rich Low_complexity Low_complexity 1 29 0 268 266 0 31 chrX 129623044 129623108 -47351032 - L2 LINE L2 -1 3271 3210 226 304 184 33 chrX 129623667 129624003 -47350137 - L2 LINE L2 -1286 2028 1642 201 74 0 0 chrX 129625053 129625080 -47349060 + (TG)n Simple_repeat Simple_repeat 2 28 0 1857 125 13 35 chrX 129626972 129627283 -47346857 - AluJo SINE Alu -8 304 1 21 82 0 0 chrX 129627352 129627401 -47346739 + AT_rich Low_complexity Low_complexity 1 49 0 754 326 13 8 chrX 129627543 129627779 -47346361 - MIR SINE MIR -25 237 1 340 253 13 0 chrX 129628314 129628393 -47345747 - L2 LINE L2 -2 3311 3232 2078 157 39 22 chrX 129628530 129628990 -47345150 + L1MB7 LINE L1 5710 6177 -7 197 365 0 0 chrX 129629268 129629320 -47344820 + L2 LINE L2 3196 3247 -25 197 373 157 0 chrX 129629531 129629633 -47344507 - L3 LINE CR1 -44 1533 1416 1053 254 21 8 chrX 129630006 129630242 -47343898 + MIR SINE MIR 2 240 -22 2102 116 6 19 chrX 129633718 129634029 -47340111 - AluSx SINE Alu -5 307 1 2336 86 0 7 chrX 129635305 129635608 -47338532 - AluSx SINE Alu -11 301 1 285 98 0 0 chrX 129636072 129636113 -47338027 + (CA)n Simple_repeat Simple_repeat 2 42 0 417 247 12 0 chrX 129687737 129687822 -47286318 - Tigger7 DNA MER2_type -1 2490 2405 2471 168 12 12 chrX 129687828 129688245 -47285895 - Tigger7 DNA MER2_type -316 417 1 3063 174 79 50 chrX 129690283 129691030 -47283110 - L1MB7 LINE L1 0 6184 5416 1764 121 40 8 chrX 129694273 129694621 -47279519 - Tigger4(Zombi) DNA MER2_type 0 2731 1 350 223 102 76 chrX 129695013 129695170 -47278970 + MIR SINE MIR 48 208 -54 532 103 13 0 chrX 129697489 129697567 -47276573 - MADE1 DNA Mariner -1 79 1 2300 212 29 49 chrX 129697611 129698206 -47275934 - L1MD3 LINE L1 -8 7987 7405 382 222 0 0 chrX 129698249 129698330 -47275810 - HsTC2 DNA Tc2 -1808 90 10 728 273 83 37 chrX 129698523 129699014 -47275126 - L2 LINE L2 -50 3263 2751 425 295 56 53 chrX 129699489 129699774 -47274366 + MER68 LTR ERV1 229 514 -48 2115 131 11 102 chrX 129699954 129700413 -47273727 + L1MB7 LINE L1 5752 6168 -16 237 154 218 0 chrX 129700546 129700624 -47273516 - L1MC4a LINE L1 -1837 5971 5877 245 250 0 13 chrX 129700637 129700713 -47273427 + L1M4 LINE L1 2269 2343 -3803 5094 204 39 69 chrX 129700714 129701674 -47272466 + L1MC4a LINE L1 6337 7236 -572 1836 144 23 26 chrX 129701674 129701979 -47272161 + AluJo SINE Alu 3 306 -6 5094 204 39 69 chrX 129701979 129702534 -47271606 + L1MC4a LINE L1 7236 7806 -2 226 291 0 35 chrX 129702831 129702917 -47271223 - MIR SINE MIR -68 140 58 295 359 108 56 chrX 129705905 129706295 -47267845 - L2 LINE L2 -4 3268 2859 221 239 183 14 chrX 129706604 129706675 -47267465 + L2 LINE L2 3185 3267 -5 247 385 24 0 chrX 129708034 129708117 -47266023 + polypurine Low_complexity Low_complexity 3 87 0 816 200 50 6 chrX 129709916 129710096 -47264044 + MER5A DNA MER1_type 1 188 -1 225 255 57 28 chrX 129710296 129710402 -47263738 - MER103 DNA DNA -19 147 39 261 0 0 0 chrX 129710727 129710756 -47263384 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chrX 129710886 129710928 -47263212 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 129710939 129710960 -47263180 + AT_rich Low_complexity Low_complexity 1 21 0 628 124 0 62 chrX 129712092 129712159 -47261981 - AluJb SINE Alu -16 296 237 5390 69 29 31 chrX 129712159 129712940 -47261200 + LTR17 LTR ERV1 1 780 0 628 124 0 62 chrX 129712940 129712985 -47261155 - AluJb SINE Alu -75 237 191 1786 160 0 11 chrX 129713861 129714185 -47259955 + AluJb SINE Alu 1 321 0 776 238 210 5 chrX 129714434 129714648 -47259492 + MIR SINE MIR 3 260 -2 4275 134 13 25 chrX 129716219 129716578 -47257562 - L1MA4 LINE L1 -9 6291 5929 306 0 0 0 chrX 129716578 129716612 -47257528 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4275 134 13 25 chrX 129716612 129717019 -47257121 - L1MA4 LINE L1 -371 5929 5534 244 233 0 0 chrX 129718213 129718256 -47255884 + MIR3 SINE MIR 118 160 -48 509 232 26 19 chrX 129718330 129718485 -47255655 + MER103 DNA DNA 10 165 -1 261 206 59 98 chrX 129718500 129718602 -47255538 + MIR3 SINE MIR 109 206 -2 529 143 0 31 chrX 129719617 129719715 -47254425 - MER53 DNA DNA -94 95 1 249 338 60 30 chrX 129721138 129721271 -47252869 - L2 LINE L2 -9 3263 3127 351 293 98 35 chrX 129721398 129721572 -47252568 + MIR3 SINE MIR 3 187 -21 467 19 0 0 chrX 129724913 129724966 -47249174 + (A)n Simple_repeat Simple_repeat 1 53 0 233 313 46 62 chrX 129724966 129725161 -47248979 - L2 LINE L2 -1035 2279 2088 2186 91 10 17 chrX 129727186 129727484 -47246656 - AluSq SINE Alu -4 309 14 1519 175 14 54 chrX 129727498 129727852 -47246288 - L1MD3 LINE L1 -1 7994 7655 524 84 11 32 chrX 129728852 129728947 -47245193 - L1MA9 LINE L1 -5 6307 6215 965 147 8 39 chrX 129728951 129729163 -47244977 + L1MA8 LINE L1 5835 6023 -268 1404 176 4 47 chrX 129731508 129731787 -47242353 - AluJo SINE Alu -15 297 31 532 205 98 16 chrX 129732450 129732572 -47241568 + MER69 DNA AcHobo 4 135 -1091 1074 79 0 0 chrX 129732903 129733043 -47241097 - L1PA3 LINE L1 -3 6152 6013 273 176 0 0 chrX 129733152 129733203 -47240937 + tRNA-Ile-ATT tRNA tRNA 1 51 -26 186 133 0 0 chrX 129733781 129733811 -47240329 + (TATG)n Simple_repeat Simple_repeat 2 31 0 198 71 0 0 chrX 129734333 129734361 -47239779 + (TGG)n Simple_repeat Simple_repeat 1 28 0 483 235 9 0 chrX 129734543 129734658 -47239482 - L1MA10 LINE L1 -1 6333 6218 376 211 22 22 chrX 129736201 129736291 -47237849 + L1MC4 LINE L1 6614 6703 -1339 363 145 0 0 chrX 129736292 129736361 -47237779 + (TA)n Simple_repeat Simple_repeat 2 70 0 353 261 0 11 chrX 129736362 129736454 -47237686 + L1MC4 LINE L1 6613 6703 -1339 306 275 34 23 chrX 129736458 129736618 -47237522 + L1MC4 LINE L1 1995 6983 -1339 374 328 16 0 chrX 129736625 129736753 -47237387 + L1MC4 LINE L1 6573 6702 -1340 338 262 56 0 chrX 129736783 129736890 -47237250 + L1MC4 LINE L1 6614 6726 -1316 803 183 44 18 chrX 129736929 129737264 -47236876 - MER58 DNA MER1_type -4 2416 2 196 294 0 0 chrX 129737487 129737538 -47236602 - L2 LINE L2 -17 3255 3205 1353 96 0 18 chrX 129740033 129740251 -47233889 + L1MA3 LINE L1 6092 6305 0 292 69 0 35 chrX 129742965 129743023 -47231117 + (TTTTG)n Simple_repeat Simple_repeat 5 60 0 2034 147 0 0 chrX 129743038 129743344 -47230796 - AluSx SINE Alu -6 306 1 316 288 304 20 chrX 129743713 129744071 -47230069 - L3 LINE CR1 -126 1451 992 1900 154 3 10 chrX 129746000 129746306 -47227834 - AluJb SINE Alu -8 304 1 21 71 0 0 chrX 129747455 129747497 -47226643 + AT_rich Low_complexity Low_complexity 1 42 0 22 79 0 0 chrX 129748303 129748341 -47225799 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chrX 129752046 129752068 -47222072 + AT_rich Low_complexity Low_complexity 1 22 0 201 74 0 0 chrX 129754216 129754243 -47219897 + (TTGTG)n Simple_repeat Simple_repeat 4 30 0 204 40 0 0 chrX 129755598 129755623 -47218517 + (TA)n Simple_repeat Simple_repeat 1 25 0 207 267 162 29 chrX 129755733 129755838 -47218302 - MIR SINE MIR -67 141 23 273 119 0 0 chrX 129759157 129759199 -47214941 + (CA)n Simple_repeat Simple_repeat 2 43 0 53 146 0 0 chrX 129760974 129761056 -47213084 + AT_rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chrX 129761249 129761277 -47212863 + AT_rich Low_complexity Low_complexity 1 28 0 1922 182 26 56 chrX 129765038 129765505 -47208635 - MER31B LTR ERV1 -13 648 1 2772 170 87 45 chrX 129765532 129766214 -47207926 - MER67C LTR ERV1 0 710 1 2381 114 5 19 chrX 129766326 129766695 -47207445 + THE1B LTR MaLR 1 364 0 188 339 73 40 chrX 129766833 129766957 -47207183 + L2 LINE L2 3172 3299 -14 2262 79 0 10 chrX 129766965 129767268 -47206872 + AluY SINE Alu 1 300 -11 659 233 25 25 chrX 129767639 129767802 -47206338 - MER5A DNA MER1_type -24 165 3 2425 77 0 0 chrX 129768238 129768535 -47205605 + AluY SINE Alu 1 297 -14 475 347 64 46 chrX 129768937 129769474 -47204666 + L2 LINE L2 2699 3239 -33 3832 162 53 45 chrX 129769474 129770203 -47203937 + L1MB3 LINE L1 5279 6019 -164 1821 132 88 44 chrX 129770203 129770612 -47203528 + MSTA LTR MaLR 2 428 0 3832 162 53 45 chrX 129770612 129770779 -47203361 + L1MB3 LINE L1 6019 6183 0 710 276 134 100 chrX 129771386 129771947 -47202193 - MLT1K LTR MaLR -7 581 2 2178 124 7 0 chrX 129772087 129772394 -47201746 - AluSx SINE Alu -3 309 1 662 260 43 43 chrX 129772577 129772835 -47201305 + L1ME1 LINE L1 5906 6163 -3 549 278 97 48 chrX 129773013 129773261 -47200879 + L2 LINE L2 2242 2501 -813 560 368 56 32 chrX 129773357 129773699 -47200441 + L2 LINE L2 2872 3221 -51 1690 124 108 4 chrX 129775011 129775308 -47198832 - AluSx SINE Alu 0 324 1 2379 155 37 9 chrX 129775413 129775870 -47198270 - L1MB2 LINE L1 -21 6150 5681 338 107 0 18 chrX 129776196 129776252 -47197888 + (CA)n Simple_repeat Simple_repeat 2 56 0 959 256 90 54 chrX 129776557 129776655 -47197485 + L1MDb LINE L1 1122 1215 -5372 2019 115 31 10 chrX 129776655 129776943 -47197197 - AluSx SINE Alu -18 294 1 959 256 90 54 chrX 129776943 129777635 -47196505 + L1MDb LINE L1 1215 1992 -4595 942 224 68 76 chrX 129777649 129778369 -47195771 + L1MDb LINE L1 2042 2731 -3675 22 0 0 0 chrX 129778630 129778652 -47195488 + AT_rich Low_complexity Low_complexity 1 22 0 2242 112 0 0 chrX 129779168 129779464 -47194676 - AluSx SINE Alu -16 296 1 897 304 48 41 chrX 129779509 129779949 -47194191 - MLT1K LTR MaLR -4 584 142 487 339 60 9 chrX 129780157 129780390 -47193750 + MIR SINE MIR 2 246 -16 1229 287 60 126 chrX 129780623 129781436 -47192704 + L2 LINE L2 1485 2350 -964 243 0 0 0 chrX 129781436 129781463 -47192677 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1229 287 60 126 chrX 129781463 129781481 -47192659 + L2 LINE L2 2350 2368 -946 622 142 0 50 chrX 129781481 129781601 -47192539 - FLAM_C SINE Alu -26 117 4 1229 287 60 126 chrX 129781601 129782128 -47192012 + L2 LINE L2 2368 2865 -449 533 283 109 26 chrX 129783414 129783679 -47190461 - L1ME3A LINE L1 -235 5935 5649 1301 163 45 10 chrX 129783681 129783970 -47190170 + MER33 DNA MER1_type 4 302 -22 814 279 35 25 chrX 129784005 129784321 -47189819 - L1ME3A LINE L1 -506 5656 5338 434 272 43 43 chrX 129784369 129784626 -47189514 - L1ME3A LINE L1 -854 5292 5036 495 277 43 34 chrX 129784647 129784997 -47189143 - L1ME3A LINE L1 -1616 4530 4178 5342 160 26 18 chrX 129785000 129786787 -47187353 - L1PA16 LINE L1 -9 6157 4365 1482 312 40 24 chrX 129786800 129787872 -47186268 - L1M4 LINE L1 -1128 5018 3930 4210 196 20 13 chrX 129787907 129789080 -47185060 - L1MB7 LINE L1 0 6420 5241 831 208 42 5 chrX 129789091 129789322 -47184818 - L1MB7 LINE L1 -3865 2517 2279 255 267 108 17 chrX 129789318 129789494 -47184646 - L1M4 LINE L1 -3668 2478 2287 * 1808 110 0 0 chrX 129790075 129790321 -47183819 + AluSx SINE Alu 59 304 -8 550 345 129 9 chrX 129790446 129790794 -47183346 + LTR16A LTR ERVL 61 450 0 1246 234 93 42 chrX 129790798 129791238 -47182902 - L1ME2 LINE L1 -90 6074 5658 1835 111 44 11 chrX 129791238 129791555 -47182585 - AluSx SINE Alu 0 328 3 1246 234 93 42 chrX 129791555 129791998 -47182142 - L1ME2 LINE L1 -506 5658 5141 929 141 65 5 chrX 129792144 129792329 -47181811 - MER63 DNA MER1_type -815 246 51 186 43 0 0 chrX 129792331 129792354 -47181786 + (TG)n Simple_repeat Simple_repeat 2 24 0 5047 116 17 25 chrX 129792390 129792753 -47181387 - L1PB4 LINE L1 -1 6155 5791 270 0 0 0 chrX 129792753 129792783 -47181357 + (TG)n Simple_repeat Simple_repeat 2 31 0 5047 116 17 25 chrX 129792783 129793283 -47180857 - L1PB4 LINE L1 -365 5791 5299 5941 197 49 13 chrX 129793285 129794483 -47179657 + L1 LINE L1 3795 5055 -1091 7035 26 1 4 chrX 129794483 129795313 -47178827 + L1PA5 LINE L1 5321 6149 -5 5941 197 49 13 chrX 129795313 129795552 -47178588 + L1 LINE L1 5055 5284 -862 525 245 54 7 chrX 129795559 129795706 -47178434 - L1ME2 LINE L1 -1051 5095 4942 320 292 19 98 chrX 129795819 129796083 -47178057 - L1ME LINE L1 -332 5789 5547 649 252 102 56 chrX 129796622 129796888 -47177252 - MER102b DNA MER1_type -6 335 58 8244 116 10 18 chrX 129796953 129798263 -47175877 - HSMAR2 DNA Mariner -1 1301 2 192 282 90 26 chrX 129799626 129799704 -47174436 - L2 LINE L2 0 3313 3231 368 136 15 0 chrX 129800902 129800968 -47173172 - Alu SINE Alu -2 300 234 1602 128 64 24 chrX 129801069 129801398 -47172742 - L1MCa LINE L1 -4881 1545 1204 2284 100 3 0 chrX 129801398 129801699 -47172441 - AluSx SINE Alu -10 302 1 6524 145 51 8 chrX 129801699 129802785 -47171355 - L1M3d LINE L1 -4759 1132 1 2104 303 36 19 chrX 129802788 129803757 -47170383 - L1MCa LINE L1 -5367 1240 255 289 348 106 35 chrX 129804111 129804252 -47169888 + L2 LINE L2 3122 3272 0 1011 148 17 11 chrX 129804398 129804574 -47169566 + MLT1D LTR MaLR 1 177 -328 13786 40 0 1 chrX 129804586 129807027 -47167113 - L1PA4 LINE L1 -1 6154 3714 14758 38 2 0 chrX 129807027 129808859 -47165281 + L1PA4 LINE L1 1886 3721 -2425 1086 235 38 74 chrX 129808869 129809020 -47165120 + L1MEc LINE L1 1658 1813 -4583 1880 109 46 0 chrX 129809020 129809304 -47164836 - L1PA13 LINE L1 -3 6160 5864 1086 235 38 74 chrX 129809304 129809383 -47164757 + L1MEc LINE L1 1813 1893 -4503 2167 104 0 0 chrX 129809383 129809672 -47164468 + AluSg SINE Alu 10 298 -12 1086 235 38 74 chrX 129809672 129809887 -47164253 + L1MEc LINE L1 1893 2088 -4308 1104 320 28 18 chrX 129810021 129810408 -47163732 + L2 LINE L2 2918 3308 -5 265 295 84 0 chrX 129810401 129810496 -47163644 - L2 LINE L2 -1001 2313 2211 * 1909 141 18 0 chrX 129811523 129811800 -47162340 - AluSx SINE Alu -30 282 1 232 187 77 88 chrX 129812323 129812414 -47161726 - MER102b DNA MER1_type -251 90 1 389 306 9 0 chrX 129812915 129813023 -47161117 - MIR3 SINE MIR -12 196 88 349 259 111 37 chrX 129813068 129813203 -47160937 - MIR3 SINE MIR -16 192 48 1698 163 17 21 chrX 129813236 129813524 -47160616 - AluJo SINE Alu -25 287 1 1949 154 59 17 chrX 129814402 129814823 -47159317 + L1MB3 LINE L1 5586 6024 -159 773 174 15 92 chrX 129815426 129815621 -47158519 + MLT1A1 LTR MaLR 15 194 -171 3768 218 32 25 chrX 129815791 129816664 -47157476 + MLT1A1-int LTR MaLR 855 1733 -2 1057 217 47 43 chrX 129816672 129817091 -47157049 + MLT1A1 LTR MaLR 1 363 -2 258 206 44 15 chrX 129817172 129817240 -47156900 - MIR SINE MIR -73 135 66 305 208 15 3 chrX 129817315 129817400 -47156740 + MER7A DNA MER2_type 2 84 -262 38504 67 4 5 chrX 129817408 129823546 -47150594 - L1PA7 LINE L1 -13 6141 11 4427 196 25 5 chrX 129823551 129824604 -47149536 - L1 LINE L1 -947 5199 4126 620 205 0 0 chrX 129824605 129824722 -47149418 + Tigger1 DNA MER2_type 2301 2417 -1 309 339 0 17 chrX 129824745 129824863 -47149277 - L2 LINE L2 -656 2658 2543 253 359 68 29 chrX 129824893 129825244 -47148896 - L2 LINE L2 -691 2623 2259 206 83 0 56 chrX 129825402 129825438 -47148702 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 203 177 32 32 chrX 129825676 129825738 -47148402 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 486 289 13 26 chrX 129826295 129826447 -47147693 - MIR3 SINE MIR 0 208 59 195 390 0 0 chrX 129826557 129826616 -47147524 - L2 LINE L2 -87 3185 3127 2069 42 15 0 chrX 129827406 129827666 -47146474 + L1PA4 LINE L1 5892 6155 0 1255 287 92 49 chrX 129827740 129829127 -47145013 - L1MEc LINE L1 -4851 1545 100 494 301 130 37 chrX 129829411 129829710 -47144430 - L2 LINE L2 -8 3264 2938 232 239 113 0 chrX 129829748 129829819 -47144321 + L2 LINE L2 3137 3215 -57 1286 135 47 0 chrX 129830613 129830828 -47143312 - Tigger3(Golem) DNA MER2_type -46 2983 2759 3631 126 6 3 chrX 129830834 129831455 -47142685 + L1P LINE L1 2382 3004 -3142 678 171 0 0 chrX 129831559 129831664 -47142476 + FRAM SINE Alu 42 146 -30 86 71 0 0 chrX 129831666 129831836 -47142304 + AT_rich Low_complexity Low_complexity 1 170 0 256 271 42 31 chrX 129833371 129833467 -47140673 - MIR SINE MIR -82 180 84 225 138 62 108 chrX 129833613 129833678 -47140462 + L3 LINE CR1 951 1012 -565 226 228 25 38 chrX 129834038 129834117 -47140023 + L2 LINE L2 3232 3309 -4 198 103 0 0 chrX 129834117 129834146 -47139994 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 251 89 67 0 chrX 129834147 129834192 -47139948 + T-rich Low_complexity Low_complexity 2 49 0 409 172 0 0 chrX 129834195 129834259 -47139881 - AluJ/FLAM SINE Alu -248 64 1 201 74 0 0 chrX 129834526 129834553 -47139587 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrX 129835015 129835036 -47139104 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chrX 129835338 129835362 -47138778 + (T)n Simple_repeat Simple_repeat 1 24 0 504 0 0 0 chrX 129836780 129836836 -47137304 + (TC)n Simple_repeat Simple_repeat 1 56 0 24 32 0 0 chrX 129837523 129837554 -47136586 + AT_rich Low_complexity Low_complexity 1 31 0 1879 143 7 17 chrX 129837667 129837960 -47136180 - AluJo SINE Alu -22 290 1 23 33 0 0 chrX 129837987 129838017 -47136123 + AT_rich Low_complexity Low_complexity 1 30 0 252 284 39 29 chrX 129838722 129838824 -47135316 - MIR SINE MIR -54 208 106 336 292 97 0 chrX 129839381 129839494 -47134646 + L2 LINE L2 3181 3304 -9 1793 113 12 4 chrX 129840242 129840498 -47133642 - AluSx SINE Alu -19 293 36 423 312 60 90 chrX 129841448 129842162 -47131978 - L2 LINE L2 -16 3256 2552 276 301 113 63 chrX 129842193 129842493 -47131647 + L2 LINE L2 2709 3022 -250 3736 7 0 2 chrX 129842906 129843331 -47130809 - L1PA2 LINE L1 0 6155 5732 266 350 137 23 chrX 129843331 129843628 -47130512 + L2 LINE L2 2642 2976 -338 204 283 183 8 chrX 129843665 129843785 -47130355 + L2 LINE L2 3168 3308 -5 3456 116 160 91 chrX 129845046 129845815 -47128325 - LTR12 LTR ERV1 0 826 5 2530 155 45 25 chrX 129845830 129846423 -47127717 - pTR5 LTR ERV1 -1093 1345 741 240 279 0 0 chrX 129846530 129846609 -47127531 + L1ME4a LINE L1 4735 4813 -1333 2101 141 166 24 chrX 129846728 129846947 -47127193 - LTR64 LTR ERVK 0 558 372 2386 90 0 3 chrX 129846947 129847247 -47126893 + AluSx SINE Alu 1 299 -13 2101 141 166 24 chrX 129847247 129847496 -47126644 - LTR64 LTR ERVK -186 372 23 449 252 111 11 chrX 129847753 129847930 -47126210 + L1ME4a LINE L1 5274 5465 -656 255 260 61 40 chrX 129847990 129848189 -47125951 - L1MCa LINE L1 -4572 1854 1718 * 940 91 56 0 chrX 129848179 129848322 -47125818 + L1PA16 LINE L1 5776 5926 -240 359 302 34 67 chrX 129848318 129848586 -47125554 - L1MCa LINE L1 -5597 819 561 * 222 164 75 30 chrX 129848767 129848834 -47125306 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 521 270 114 55 chrX 129848930 129849367 -47124773 + L1ME4a LINE L1 5458 5920 -201 261 0 0 0 chrX 129849416 129849445 -47124695 + (CA)n Simple_repeat Simple_repeat 2 30 0 1200 201 146 3 chrX 129849445 129849733 -47124407 + MER2 DNA MER2_type 7 335 -10 405 164 0 0 chrX 129849758 129849831 -47124309 + (TA)n Simple_repeat Simple_repeat 1 73 0 295 257 118 7 chrX 129849931 129850075 -47124065 - MER2 DNA MER2_type -10 335 176 387 0 0 0 chrX 129850075 129850118 -47124022 + (TG)n Simple_repeat Simple_repeat 2 44 0 303 28 0 0 chrX 129850610 129850646 -47123494 + (CA)n Simple_repeat Simple_repeat 1 36 0 562 264 49 49 chrX 129851092 129851255 -47122885 + MER91A DNA MER1_type 1 163 -33 254 294 73 0 chrX 129851290 129851358 -47122782 + MER91A DNA MER1_type 124 196 0 401 202 165 37 chrX 129851422 129851531 -47122609 + L2 LINE L2 3186 3308 -5 209 317 0 42 chrX 129851943 129852110 -47122030 + (CATATA)n Simple_repeat Simple_repeat 5 164 0 379 335 168 14 chrX 129852568 129853011 -47121129 - L2 LINE L2 -213 3059 2531 603 312 150 21 chrX 129853013 129853353 -47120787 - L2 LINE L2 -452 2862 2479 194 0 39 0 chrX 129853419 129853445 -47120695 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 340 259 154 35 chrX 129853712 129853913 -47120227 - MIR SINE MIR -24 238 14 349 182 22 231 chrX 129853915 129853981 -47120159 + MER5B DNA MER1_type 1 79 -99 2586 185 34 20 chrX 129853981 129854571 -47119569 - L1MB8 LINE L1 -9 6169 5572 349 182 22 231 chrX 129854571 129854729 -47119411 + MER5B DNA MER1_type 79 178 0 180 246 62 31 chrX 129855587 129855652 -47118488 - MER5B DNA MER1_type -79 99 33 445 262 83 52 chrX 129855739 129855935 -47118205 - MIR3 SINE MIR -50 212 6 728 255 0 0 chrX 129856008 129856157 -47117983 + FRAM SINE Alu 5 153 -13 850 280 53 28 chrX 129856597 129856915 -47117225 + L2 LINE L2 2267 2592 -722 2740 78 16 16 chrX 129857259 129857632 -47116508 + THE1C LTR MaLR 3 375 0 2134 98 0 4 chrX 129857862 129858138 -47116002 + AluSq SINE Alu 17 291 -22 514 260 13 77 chrX 129858259 129858494 -47115646 + L2 LINE L2 3094 3313 0 1169 337 174 15 chrX 129859043 129860017 -47114123 - L2 LINE L2 -338 2976 1848 4276 64 2 9 chrX 129860102 129860663 -47113477 - L1PA10 LINE L1 0 6168 5612 1690 219 38 14 chrX 129861429 129861872 -47112268 + MLT1C LTR MaLR 1 454 -13 1651 107 42 58 chrX 129862325 129862635 -47111505 - L1MC2 LINE L1 -9 6335 6031 4061 137 18 0 chrX 129862767 129863425 -47110715 - L1MC2 LINE L1 -248 6096 5427 952 205 0 0 chrX 129863923 129864123 -47110017 + L1MB4 LINE L1 5847 6046 -134 23 0 0 0 chrX 129864213 129864236 -47109904 + AT_rich Low_complexity Low_complexity 1 23 0 253 135 0 77 chrX 129864861 129864913 -47109227 + MIR3 SINE MIR 149 196 -12 428 358 94 69 chrX 129865150 129866067 -47108073 + L2 LINE L2 2034 2973 -341 1445 216 25 41 chrX 129866228 129866593 -47107547 + MLT1J LTR MaLR 1 359 -152 189 326 11 11 chrX 129866595 129866684 -47107456 + L2 LINE L2 2191 2279 -1035 668 285 15 44 chrX 129867190 129867460 -47106680 + MIR SINE MIR 1 262 0 412 316 53 78 chrX 129867474 129867718 -47106422 - L2 LINE L2 -61 3211 2974 363 281 16 124 chrX 129869316 129869501 -47104639 + MIR SINE MIR 28 192 -70 504 233 42 8 chrX 129869932 129870052 -47104088 + L2 LINE L2 3188 3311 -2 739 112 0 0 chrX 129870081 129870212 -47103928 + L1PA10 LINE L1 6041 6171 0 498 287 61 85 chrX 129870674 129870921 -47103219 + MIR SINE MIR 8 248 -14 572 263 151 43 chrX 129871170 129871402 -47102738 + MIR SINE MIR 2 258 -4 2264 104 0 31 chrX 129871464 129871782 -47102358 + AluSx SINE Alu 1 308 -4 646 273 115 25 chrX 129871993 129872279 -47101861 - LTR16A1 LTR ERVL 0 457 146 3622 125 68 59 chrX 129872381 129872454 -47101686 + L1MC1 LINE L1 5571 5642 -691 1785 201 10 0 chrX 129872454 129872763 -47101377 - AluJo SINE Alu 0 312 1 3622 125 68 59 chrX 129872763 129873355 -47100785 + L1MC1 LINE L1 5642 6246 -87 2215 132 9 20 chrX 129873355 129873696 -47100444 - MER1B DNA MER1_type 0 337 1 3622 125 68 59 chrX 129873696 129873774 -47100366 + L1MC1 LINE L1 6246 6322 -11 310 330 82 0 chrX 129873896 129873993 -47100147 - MIR SINE MIR -110 152 48 733 308 34 41 chrX 129874099 129874514 -47099626 + MLT1K LTR MaLR 171 582 -6 300 258 66 42 chrX 129874749 129874769 -47099371 - L1MA10 LINE L1 -1 6333 6314 2465 218 59 31 chrX 129874769 129875745 -47098395 - L1ME2 LINE L1 -10 6652 5657 2076 116 27 48 chrX 129875801 129876173 -47097967 - THE1B LTR MaLR 0 364 1 11664 96 2 11 chrX 129876173 129877767 -47096373 - THE1B-int LTR MaLR 0 1580 1 2055 110 30 54 chrX 129877767 129878140 -47096000 - THE1B LTR MaLR 0 364 1 40467 34 24 1 chrX 129878184 129884197 -47089943 + L1PA2 LINE L1 4 6155 0 3709 202 25 55 chrX 129884289 129884861 -47089279 - L1ME2 LINE L1 -1163 5481 4894 2058 116 0 0 chrX 129884861 129885128 -47089012 + AluSx SINE Alu 1 267 -45 3709 202 25 55 chrX 129885128 129885164 -47088976 - L1ME2 LINE L1 -1750 4894 4858 1703 174 7 20 chrX 129885164 129885458 -47088682 - AluJo SINE Alu -18 294 5 3709 202 25 55 chrX 129885458 129886005 -47088135 - L1ME2 LINE L1 -1786 4858 4359 1747 212 33 56 chrX 129886007 129886522 -47087618 - MLT1D LTR MaLR -2 503 1 818 248 44 103 chrX 129886526 129886934 -47087206 - MLT1D-int LTR MaLR -4 1367 984 878 257 5 5 chrX 129887082 129887300 -47086840 - MLT1D-int LTR MaLR -491 880 663 2021 207 74 78 chrX 129887357 129887741 -47086399 - MLT1D-int LTR MaLR -712 659 278 1335 86 66 0 chrX 129887741 129887938 -47086202 - L1PA13 LINE L1 -4 6159 5950 2021 207 74 78 chrX 129887938 129888215 -47085925 - MLT1D-int LTR MaLR -1093 278 1 2198 186 23 39 chrX 129888215 129888727 -47085413 - MLT1D LTR MaLR 0 505 2 1881 254 100 22 chrX 129888728 129889601 -47084539 - L1ME2 LINE L1 -2286 4358 3418 210 303 0 53 chrX 129889618 129889694 -47084446 - L2 LINE L2 -9 3263 3192 452 197 82 11 chrX 129890233 129890416 -47083724 - L1ME2 LINE L1 -3213 3431 3236 2210 244 52 9 chrX 129890427 129891216 -47082924 - L1M4 LINE L1 -3241 3141 2318 446 99 0 0 chrX 129891332 129891403 -47082737 - Tigger3(Golem) DNA MER2_type -2757 272 202 1765 20 0 0 chrX 129891403 129891607 -47082533 - L1PA2 LINE L1 -4 6151 5948 2261 251 24 33 chrX 129891611 129892091 -47082049 - L1ME2 LINE L1 -4330 2495 2012 198 0 0 0 chrX 129892091 129892113 -47082027 + (TC)n Simple_repeat Simple_repeat 1 22 0 2261 251 24 33 chrX 129892113 129892965 -47081175 - L1ME2 LINE L1 -4813 2012 1014 209 33 33 0 chrX 129892988 129893018 -47081122 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 345 297 26 15 chrX 129893687 129893882 -47080258 - L1ME2 LINE L1 -6307 235 39 800 257 32 6 chrX 129893914 129894229 -47079911 - L1M4 LINE L1 -1817 4329 4007 323 222 123 12 chrX 129894322 129894403 -47079737 + MIR3 SINE MIR 67 156 -52 287 242 45 8 chrX 129894708 129894840 -47079300 + (TA)n Simple_repeat Simple_repeat 1 137 0 2322 136 3 0 chrX 129894842 129895187 -47078953 - MER7A DNA MER2_type -2 344 1 216 0 0 0 chrX 129895198 129895222 -47078918 + (TA)n Simple_repeat Simple_repeat 2 25 0 1782 175 0 7 chrX 129895307 129895599 -47078541 - AluJb SINE Alu -14 298 9 340 213 32 32 chrX 129896384 129896478 -47077662 - MIR SINE MIR -10 252 159 655 241 6 19 chrX 129896485 129896643 -47077497 + FRAM SINE Alu 1 155 -21 288 293 13 0 chrX 129896646 129896721 -47077419 - MIR SINE MIR -59 149 74 428 339 18 20 chrX 129897008 129897451 -47076689 + L1ME4a LINE L1 4034 4475 -1671 415 266 37 78 chrX 129897585 129897873 -47076267 + L1MC5 LINE L1 7356 7617 -344 2522 124 45 9 chrX 129897873 129898292 -47075848 - Tigger2a DNA MER2_type 0 434 1 415 266 37 78 chrX 129898292 129898488 -47075652 + L1MC5 LINE L1 7617 7820 -141 1834 167 14 30 chrX 129898504 129898525 -47075615 - MLT1B LTR MaLR 0 390 370 2682 147 27 9 chrX 129898525 129898973 -47075167 - MSTB2 LTR MaLR 0 457 2 1834 167 14 30 chrX 129898973 129899322 -47074818 - MLT1B LTR MaLR -20 370 26 2099 125 0 0 chrX 129899437 129899743 -47074397 + AluSg SINE Alu 1 306 0 319 292 80 40 chrX 129899908 129900257 -47073883 + L1ME4a LINE L1 4672 5034 -1112 4978 140 20 22 chrX 129900562 129901541 -47072599 + L1PB4 LINE L1 5175 6149 -7 270 0 0 0 chrX 129901562 129901592 -47072548 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40208 35 26 0 chrX 129901592 129907532 -47066608 - L1PA3 LINE L1 -10 6145 49 1960 111 0 63 chrX 129907650 129907966 -47066174 + AluSx SINE Alu 1 296 -16 362 241 119 33 chrX 129907968 129908151 -47065989 + L1ME4a LINE L1 5364 5530 -591 2310 138 13 8 chrX 129908151 129908534 -47065606 - MLT1B LTR MaLR -2 388 4 362 241 119 33 chrX 129908534 129908965 -47065175 + L1ME4a LINE L1 5530 6020 -101 396 277 54 65 chrX 129910834 129911018 -47063122 - MER5A DNA MER1_type -1 188 7 1276 216 71 11 chrX 129911032 129911467 -47062673 - Charlie2 DNA MER1_type 0 2862 2402 354 200 50 58 chrX 129911561 129911681 -47062459 - Charlie2 DNA MER1_type -628 2234 2116 366 250 200 0 chrX 129911698 129911838 -47062302 + L1MC4a LINE L1 6000 6167 -1641 315 155 29 0 chrX 129911879 129911982 -47062158 + (TA)n Simple_repeat Simple_repeat 1 106 0 450 0 0 0 chrX 129911985 129912035 -47062105 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 444 82 0 0 chrX 129914220 129914281 -47059859 + (ATG)n Simple_repeat Simple_repeat 2 62 0 446 280 17 45 chrX 129914323 129914508 -47059632 - MIR SINE MIR -50 212 36 263 237 0 0 chrX 129915420 129915479 -47058661 - L2 LINE L2 0 3313 3255 372 299 28 9 chrX 129917040 129917147 -47056993 + MIR SINE MIR 32 140 -68 339 349 40 13 chrX 129917791 129917940 -47056200 - L2 LINE L2 -816 2498 2346 409 332 75 5 chrX 129917972 129918171 -47055969 + MIR SINE MIR 32 244 -18 209 125 0 25 chrX 129918577 129918617 -47055523 + (TAA)n Simple_repeat Simple_repeat 1 39 0 607 224 51 39 chrX 129918710 129918866 -47055274 + MIR SINE MIR 100 257 -5 492 258 35 44 chrX 129918943 129919097 -47055043 - MIR SINE MIR -21 187 28 278 352 57 57 chrX 129921130 129921431 -47052709 - L2 LINE L2 -1 3312 3012 2385 108 103 16 chrX 129921660 129922047 -47052093 + MER61C LTR ERV1 14 434 0 281 316 10 31 chrX 129922063 129922188 -47051952 - MIR SINE MIR -66 142 20 305 231 40 95 chrX 129922420 129922608 -47051532 + L1P4 LINE L1 5628 5804 -364 250 267 43 35 chrX 129922685 129922801 -47051339 + L1ME4a LINE L1 6004 6120 -1 627 160 67 0 chrX 129922853 129922972 -47051168 + L1MA8 LINE L1 6160 6286 -5 938 236 68 21 chrX 129923183 129923420 -47050720 - MIR SINE MIR -2 260 13 188 35 35 0 chrX 129923476 129923505 -47050635 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2183 92 7 0 chrX 129923514 129923796 -47050344 - L1PA10 LINE L1 -11 6157 5874 210 233 0 0 chrX 129924109 129924152 -47049988 + L2 LINE L2 3268 3310 -3 26 0 0 0 chrX 129925754 129925780 -47048360 + AT_rich Low_complexity Low_complexity 1 26 0 255 226 151 0 chrX 129925806 129925899 -47048241 - L1ME4a LINE L1 -29 6092 5986 2555 64 3 21 chrX 129926372 129926702 -47047438 + L1MA1 LINE L1 5979 6302 0 670 226 10 15 chrX 129926834 129927004 -47047136 + MIR3 SINE MIR 7 177 -31 940 163 0 0 chrX 129928905 129929046 -47045094 + AluJb SINE Alu 1 141 -171 219 167 17 33 chrX 129929064 129929124 -47045016 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1574 197 48 0 chrX 129929145 129929440 -47044700 - AluJo SINE Alu -3 309 1 219 330 51 17 chrX 129929978 129930096 -47044044 + L2 LINE L2 2552 2673 -641 641 225 144 0 chrX 129930109 129930269 -47043871 + MER5A DNA MER1_type 7 189 0 538 285 58 86 chrX 129930423 129930840 -47043300 + L2 LINE L2 2860 3264 -8 1870 124 73 34 chrX 129931329 129931685 -47042455 - THE1C LTR MaLR -5 370 1 556 273 0 0 chrX 129931688 129931816 -47042324 - MER94 DNA DNA -3 131 4 319 234 0 0 chrX 129931820 129931884 -47042256 - MIR SINE MIR -3 259 196 1343 170 46 35 chrX 129931919 129932201 -47041939 - L1MB7 LINE L1 -19 6165 5881 592 262 14 7 chrX 129932208 129932349 -47041791 - MIR SINE MIR -119 143 2 796 241 96 40 chrX 129932361 129932538 -47041602 - MARNA DNA Mariner -135 451 285 1306 240 39 75 chrX 129932538 129932926 -47041214 + MLT1A2 LTR MaLR 1 374 0 796 241 96 40 chrX 129932926 129933072 -47041068 - MARNA DNA Mariner -301 285 110 6772 84 3 2 chrX 129933301 129934937 -47039203 - L1PA14 LINE L1 -4 6157 4538 2337 64 0 4 chrX 129935612 129935932 -47038208 - AluY SINE Alu 0 319 1 312 246 50 40 chrX 129936020 129936160 -47037980 - L1ME4a LINE L1 -18 6072 1194 829 187 12 18 chrX 129936193 129936359 -47037781 - MIR SINE MIR -22 240 76 250 259 37 0 chrX 129936426 129936480 -47037660 - L2 LINE L2 0 3272 3217 195 288 17 17 chrX 129936547 129936606 -47037534 - MIR SINE MIR -154 108 50 423 0 0 0 chrX 129936809 129936856 -47037284 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 203 297 16 16 chrX 129937723 129937787 -47036353 + L3b LINE CR1 1432 1495 -88 564 325 68 46 chrX 129938726 129939138 -47035002 - L2 LINE L2 -10 3262 2842 2195 122 0 0 chrX 129939911 129940197 -47033943 + AluSx SINE Alu 1 286 -26 1101 177 5 10 chrX 129941477 129941706 -47032434 + AluJo SINE Alu 85 312 0 2705 147 9 47 chrX 129941822 129942265 -47031875 - MSTB LTR MaLR 0 426 1 1301 27 0 0 chrX 129942563 129942711 -47031429 - AluY SINE Alu -1 310 163 13105 36 1 0 chrX 129942711 129944960 -47029180 + L1PA4 LINE L1 3900 6154 -1 1030 148 17 11 chrX 129944972 129945148 -47028992 - MLT1D LTR MaLR -328 177 1 271 348 106 35 chrX 129945294 129945435 -47028705 - L2 LINE L2 0 3272 3122 2173 303 36 19 chrX 129945789 129946758 -47027382 + L1MEc LINE L1 369 1354 -5367 6653 145 51 8 chrX 129946761 129947847 -47026293 + L1MB1 LINE L1 1 1132 -4759 1499 107 0 0 chrX 129947847 129948043 -47026097 + AluSq SINE Alu 1 196 -117 3501 165 50 27 chrX 129948046 129948870 -47025270 + L1MB1 LINE L1 4743 5628 -364 357 24 0 0 chrX 129948870 129948912 -47025228 + (CA)n Simple_repeat Simple_repeat 1 42 0 3501 165 50 27 chrX 129948912 129949285 -47024855 + L1MB1 LINE L1 5628 5991 -1 333 235 7 86 chrX 129949609 129949766 -47024374 + L1MEc LINE L1 1317 1428 -5112 262 211 70 42 chrX 129950138 129950209 -47023931 - L2 LINE L2 -4 3309 3237 956 231 81 8 chrX 129951164 129951398 -47022742 + MER69 DNA AcHobo 5 255 -2271 628 256 18 6 chrX 129951808 129951972 -47022168 + L1MEc LINE L1 36 201 -6195 3907 235 66 45 chrX 129951973 129952736 -47021404 + L1MEc LINE L1 252 1014 -5201 2208 126 0 0 chrX 129952736 129953038 -47021102 + AluSx SINE Alu 1 302 -10 3907 235 66 45 chrX 129953038 129953554 -47020586 + L1MEc LINE L1 1014 1518 -4697 8382 125 17 5 chrX 129953559 129955915 -47018225 + ERVL LTR ERVL 2846 5407 -357 190 390 0 0 chrX 129957055 129957114 -47017026 + L2 LINE L2 3127 3185 -87 478 289 13 26 chrX 129957224 129957376 -47016764 + MIR3 SINE MIR 59 208 0 203 177 32 32 chrX 129957933 129957995 -47016145 + (CAGAGA)n Simple_repeat Simple_repeat 2 63 0 206 83 0 56 chrX 129958233 129958269 -47015871 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 240 359 68 29 chrX 129958427 129958778 -47015362 + L2 LINE L2 2259 2623 -691 304 339 0 17 chrX 129958808 129958926 -47015214 + L2 LINE L2 2543 2658 -656 674 205 0 0 chrX 129958949 129959066 -47015074 - Tigger1 DNA MER2_type -1 2417 2301 4915 196 25 5 chrX 129959067 129960120 -47014020 + L1PB3 LINE L1 4126 5199 -947 29575 50 0 1 chrX 129960125 129966274 -47007866 + L1PA5 LINE L1 11 6154 0 470 19 0 0 chrX 129966276 129966330 -47007810 + L1PA3 LINE L1 6099 6152 -3 5781 113 24 14 chrX 129966345 129967292 -47006848 + L1PB3 LINE L1 5200 6154 0 11648 112 18 2 chrX 129967634 129969335 -47004805 - Tigger1 DNA MER2_type -103 2315 588 760 192 52 0 chrX 129969336 129969508 -47004632 + L1MB7 LINE L1 4122 4302 -1844 * 985 75 0 23 chrX 129969506 129969639 -47004501 - L1P1 LINE L1 -345 5810 5681 459 94 0 0 chrX 129969610 129969674 -47004466 + L1PA6 LINE L1 6091 6154 0 * 2950 188 49 7 chrX 129969657 129970982 -47003158 + L1MB7 LINE L1 4271 5689 -495 11866 164 21 19 chrX 129970995 129973091 -47001049 + L1MA1 LINE L1 19 2119 -5446 * 14390 148 21 9 chrX 129973084 129976570 -46997570 + L1MA1 LINE L1 4081 7616 -105 1873 161 20 3 chrX 129976571 129976912 -46997228 + L1MB7 LINE L1 5679 6025 -159 2225 166 8 0 chrX 129976912 129977262 -46996878 + MER47A DNA MER2_type 1 354 -7 851 167 77 0 chrX 129977262 129977430 -46996710 + L1MB7 LINE L1 6003 6183 -1 413 364 49 52 chrX 129977617 129977963 -46996177 + L2 LINE L2 2928 3272 0 250 236 18 0 chrX 129978618 129978673 -46995467 + HERV16 LTR ERVL 1074 1129 -3867 1233 165 18 107 chrX 129978679 129978951 -46995189 + MLT2C2 LTR ERVL 217 464 0 469 281 170 0 chrX 129980222 129980375 -46993765 - MER5A DNA MER1_type 0 189 11 272 312 54 98 chrX 129980475 129981054 -46993086 - L2 LINE L2 -100 3172 2618 2189 120 0 0 chrX 129981077 129981376 -46992764 - AluSx SINE Alu -13 299 1 879 308 90 53 chrX 129981380 129982001 -46992139 - L2 LINE L2 -15 3257 2582 1878 134 0 4 chrX 129982001 129982269 -46991871 + AluSx SINE Alu 1 267 -45 879 308 90 53 chrX 129982269 129982669 -46991471 - L2 LINE L2 -690 2582 2199 449 235 176 65 chrX 129983975 129984274 -46989866 - MLT1H LTR MaLR 0 555 187 2009 119 0 77 chrX 129984274 129984627 -46989513 + MER1B DNA MER1_type 1 326 -13 1633 124 6 108 chrX 129984629 129984793 -46989347 - MER1B DNA MER1_type -2373 339 221 2365 110 0 0 chrX 129984793 129985101 -46989039 + AluSg SINE Alu 1 308 -2 1633 124 6 108 chrX 129985101 129985251 -46988889 - MER1B DNA MER1_type -2491 221 57 384 271 16 67 chrX 129985264 129985461 -46988679 - MLT1F LTR MaLR -359 196 6 25 0 0 0 chrX 129985830 129985855 -46988285 + AT_rich Low_complexity Low_complexity 1 25 0 465 309 211 26 chrX 129986105 129986494 -46987646 - L2 LINE L2 -2 3270 2810 410 260 110 8 chrX 129986584 129986711 -46987429 + MIR SINE MIR 46 185 -77 699 268 90 53 chrX 129986715 129986765 -46987375 - L1M4c LINE L1 -973 1603 1556 1673 213 101 56 chrX 129986765 129987039 -46987101 - MLT1D LTR MaLR 0 505 198 194 0 39 0 chrX 129987039 129987065 -46987075 + (TTG)n Simple_repeat Simple_repeat 3 29 0 1673 213 101 56 chrX 129987065 129987273 -46986867 - MLT1D LTR MaLR -307 198 1 699 268 90 53 chrX 129987273 129987939 -46986201 - L1M4c LINE L1 -1020 1556 798 882 174 0 0 chrX 129988700 129988832 -46985308 - FLAM_C SINE Alu 0 133 2 557 130 0 11 chrX 129988844 129988936 -46985204 - L1MA9 LINE L1 -69 6243 6153 879 92 4 18 chrX 129988937 129989188 -46984952 - AluJb SINE Alu -7 305 9 5142 138 27 9 chrX 129989200 129990212 -46983928 - L1MA9 LINE L1 -147 6165 5134 594 304 26 45 chrX 129990224 129990295 -46983845 - L2 LINE L2 -574 2740 2669 2234 168 18 23 chrX 129990295 129990687 -46983453 - MLT1B LTR MaLR 0 390 1 594 304 26 45 chrX 129990687 129990927 -46983213 - L2 LINE L2 -645 2669 2435 394 181 0 0 chrX 129991178 129991250 -46982890 + MLT1B LTR MaLR 179 250 -140 754 268 96 62 chrX 129991814 129992262 -46981878 + MLT1J LTR MaLR 1 463 -48 209 358 33 58 chrX 129992620 129992740 -46981400 + L2 LINE L2 3005 3121 -151 2133 126 0 13 chrX 129992840 129993150 -46980990 - AluSx SINE Alu -6 306 1 445 272 46 11 chrX 129993405 129993579 -46980561 + MIR3 SINE MIR 14 195 -13 2399 82 3 25 chrX 129994918 129995236 -46978904 + AluY SINE Alu 1 311 0 258 32 0 0 chrX 129995487 129995518 -46978622 + (TTTTA)n Simple_repeat Simple_repeat 5 35 0 333 217 0 29 chrX 129995523 129995592 -46978548 - Alu SINE Alu -6 294 228 1556 229 123 89 chrX 129995741 129996163 -46977977 - HAL1 LINE L1 -4 2503 2097 1697 164 19 45 chrX 129996163 129996474 -46977666 + AluJo SINE Alu 1 303 -9 1556 229 123 89 chrX 129996474 129996967 -46977173 - HAL1 LINE L1 -410 2097 1557 1603 173 33 0 chrX 129996968 129997239 -46976901 - AluJb SINE Alu -12 300 21 2562 137 2 13 chrX 129997239 129997634 -46976506 - L1PA16 LINE L1 -6 6160 5770 6096 121 0 2 chrX 129997635 129999003 -46975137 - L1PA15 LINE L1 -1 6164 4786 2541 139 9 35 chrX 129999006 129999437 -46974703 - L1PA16 LINE L1 -379 5787 5368 492 254 28 14 chrX 129999455 129999597 -46974543 - HAL1 LINE L1 -1590 917 774 2664 223 37 26 chrX 129999830 130000449 -46973691 - MLT1E2 LTR MaLR 0 626 1 44774 42 3 0 chrX 130000571 130006704 -46967436 + L1PA4 LINE L1 4 6152 -3 2107 114 86 17 chrX 130008989 130009340 -46964800 - THE1C LTR MaLR 0 375 1 565 284 70 89 chrX 130009437 130009877 -46964263 + L2 LINE L2 2836 3267 -5 239 224 0 0 chrX 130010145 130010194 -46963946 + L2 LINE L2 3264 3312 -1 23 54 0 0 chrX 130010382 130010419 -46963721 + AT_rich Low_complexity Low_complexity 1 37 0 223 310 58 0 chrX 130010638 130010725 -46963415 + MIR SINE MIR 75 166 -96 329 26 0 0 chrX 130011156 130011225 -46962915 + AluSp/q SINE Alu 243 311 0 450 211 27 75 chrX 130011227 130011326 -46962814 + MARNA DNA Mariner 181 272 -314 2079 156 0 0 chrX 130011326 130011627 -46962513 - AluSx SINE Alu -11 301 1 450 211 27 75 chrX 130011627 130011674 -46962466 + MARNA DNA Mariner 272 320 -266 1092 175 204 26 chrX 130011822 130012130 -46962010 + MLT1A1 LTR MaLR 1 363 -2 2203 105 14 0 chrX 130012370 130012665 -46961475 + AluSx SINE Alu 1 299 -13 1966 140 0 0 chrX 130012681 130012952 -46961188 + AluJb SINE Alu 1 271 -41 24 32 0 0 chrX 130012973 130013004 -46961136 + AT_rich Low_complexity Low_complexity 1 31 0 186 302 269 34 chrX 130013083 130013232 -46960908 - MIR3 SINE MIR 0 208 25 22 0 0 0 chrX 130013795 130013817 -46960323 + AT_rich Low_complexity Low_complexity 1 22 0 2516 43 0 55 chrX 130013898 130014227 -46959913 - AluY SINE Alu 0 311 1 2249 148 54 43 chrX 130014881 130015347 -46958793 + L1MC3 LINE L1 7291 7761 -24 247 252 101 17 chrX 130015351 130015470 -46958670 + L1ME4a LINE L1 5991 6119 -2 566 241 7 7 chrX 130016111 130016275 -46957865 - L1ME LINE L1 -651 5515 5351 181 300 40 47 chrX 130016599 130016749 -46957391 - L2 LINE L2 -89 3224 3076 7976 197 25 22 chrX 130016830 130018800 -46955340 + L1MB7 LINE L1 3296 5269 -909 1871 139 175 11 chrX 130018800 130019166 -46954974 + MSTA LTR MaLR 3 428 0 7976 197 25 22 chrX 130019166 130019561 -46954579 + L1MB7 LINE L1 5269 5662 -516 990 135 43 0 chrX 130019561 130019702 -46954438 + AluSx SINE Alu 1 147 -165 520 55 0 0 chrX 130019702 130019775 -46954365 + L1PA11 LINE L1 6003 6075 -99 1193 104 0 0 chrX 130019775 130019929 -46954211 + AluSx SINE Alu 150 303 -9 1990 145 60 31 chrX 130019936 130020081 -46954059 + L1MB7 LINE L1 5653 5792 -392 225 0 0 0 chrX 130020081 130020106 -46954034 + (TATAA)n Simple_repeat Simple_repeat 4 28 0 1990 145 60 31 chrX 130020106 130020374 -46953766 + L1MB7 LINE L1 5792 6078 -106 1497 70 10 0 chrX 130020374 130020573 -46953567 + L1PA11 LINE L1 5973 6173 -1 541 129 40 20 chrX 130020573 130020674 -46953466 + L1MB8 LINE L1 6067 6169 -9 1453 268 114 16 chrX 130020819 130021570 -46952570 - L2 LINE L2 -22 3291 2385 1768 185 0 0 chrX 130021572 130021853 -46952287 + AluJo SINE Alu 1 281 -31 583 221 13 0 chrX 130021853 130022011 -46952129 + GA-rich Low_complexity Low_complexity 1 160 0 679 207 32 74 chrX 130022013 130022139 -46952001 - L2 LINE L2 -918 2396 2281 2214 118 0 53 chrX 130022139 130022494 -46951646 - MER1B DNA MER1_type -1 336 1 679 207 32 74 chrX 130022494 130022584 -46951556 - L2 LINE L2 -1033 2281 2189 255 388 73 45 chrX 130022639 130023019 -46951121 - L2 LINE L2 -464 2850 2455 2218 164 57 0 chrX 130023019 130023422 -46950718 + MSTA LTR MaLR 3 428 0 255 388 73 45 chrX 130023422 130023482 -46950658 - L2 LINE L2 -859 2455 2398 23 0 0 0 chrX 130023982 130024005 -46950135 + AT_rich Low_complexity Low_complexity 1 23 0 1980 121 0 66 chrX 130024027 130024359 -46949781 + AluJo SINE Alu 1 310 -2 437 245 233 31 chrX 130025148 130025311 -46948829 + MIR SINE MIR 60 255 -7 749 283 29 5 chrX 130025685 130025890 -46948250 + MIR SINE MIR 40 249 -13 1794 131 10 38 chrX 130025898 130026208 -46947932 + AluSx SINE Alu 1 302 0 211 273 169 0 chrX 130026365 130026442 -46947698 - MIR SINE MIR -1 261 172 568 278 111 15 chrX 130026542 130026740 -46947400 - MIR SINE MIR -1 261 45 294 276 272 52 chrX 130026872 130027104 -46947036 + L2 LINE L2 2990 3272 0 842 203 31 0 chrX 130027164 130027327 -46946813 + MER5A DNA MER1_type 1 168 -21 271 206 48 0 chrX 130027865 130027928 -46946212 + L1ME4a LINE L1 5964 6029 -92 351 242 150 8 chrX 130028748 130028868 -46945272 - MIR SINE MIR -13 249 113 498 283 154 24 chrX 130028981 130029274 -46944866 + L1MC/D LINE L1 5467 5797 -2011 1769 155 40 0 chrX 130029282 130029406 -46944734 + AluJo SINE Alu 1 119 -193 189 0 0 0 chrX 130029406 130029427 -46944713 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1769 155 40 0 chrX 130029427 130029580 -46944560 + AluJo SINE Alu 119 289 -23 21 0 0 0 chrX 130029648 130029669 -46944471 + AT_rich Low_complexity Low_complexity 1 21 0 738 283 73 20 chrX 130029863 130030110 -46944030 - MIR SINE MIR 0 262 3 320 290 28 21 chrX 130030500 130030645 -46943495 - L1MC4a LINE L1 -1880 5928 5783 277 109 36 0 chrX 130030647 130030702 -46943438 + (TAGA)n Simple_repeat Simple_repeat 2 58 0 255 270 0 0 chrX 130030725 130030799 -46943341 - L1MC4a LINE L1 -2046 5762 5689 342 0 0 0 chrX 130032606 130032644 -46941496 + (TGGGGG)n Simple_repeat Simple_repeat 5 42 0 313 276 112 87 chrX 130032714 130032910 -46941230 - L1M2 LINE L1 -5894 955 755 211 343 10 0 chrX 130033271 130033373 -46940767 + C-rich Low_complexity Low_complexity 1 103 0 207 170 19 38 chrX 130034179 130034232 -46939908 + C-rich Low_complexity Low_complexity 6 57 0 24 32 0 0 chrX 130037249 130037280 -46936860 + AT_rich Low_complexity Low_complexity 1 31 0 917 178 65 11 chrX 130039529 130039714 -46934426 - MER20 DNA MER1_type -24 195 1 29 47 0 0 chrX 130040416 130040459 -46933681 + AT_rich Low_complexity Low_complexity 1 43 0 1675 178 0 21 chrX 130041776 130042057 -46932083 + AluJo SINE Alu 1 275 -37 2411 98 0 0 chrX 130093571 130093878 -46880262 - AluSc SINE Alu 0 309 3 588 232 40 61 chrX 130095083 130095281 -46878859 - MIR SINE MIR -32 230 37 278 225 141 0 chrX 130095554 130095625 -46878515 - MER5A DNA MER1_type -97 92 12 550 176 39 0 chrX 130095868 130095970 -46878170 + L2 LINE L2 3208 3313 0 321 47 0 0 chrX 130096457 130096500 -46877640 + (TG)n Simple_repeat Simple_repeat 2 44 0 2305 103 7 0 chrX 130096695 130096996 -46877144 + AluSx SINE Alu 1 303 -9 1955 126 52 17 chrX 130097349 130097698 -46876442 - MER46B DNA MER2_type 0 236 1 835 174 12 12 chrX 130097846 130098013 -46876127 + MER20B DNA MER1_type 53 219 0 27 29 0 0 chrX 130098267 130098301 -46875839 + AT_rich Low_complexity Low_complexity 1 34 0 204 217 22 0 chrX 130100130 130100176 -46873964 + CT-rich Low_complexity Low_complexity 1 47 0 189 107 0 0 chrX 130100176 130100204 -46873936 + (T)n Simple_repeat Simple_repeat 1 28 0 446 313 62 85 chrX 130100219 130100526 -46873614 - L2 LINE L2 -46 3226 2927 257 293 40 67 chrX 130100546 130100696 -46873444 - MER5B DNA MER1_type -31 147 2 615 386 64 16 chrX 130100849 130101346 -46872794 - L2 LINE L2 -562 2752 2232 865 215 49 68 chrX 130102711 130102888 -46871252 - MIR SINE MIR -1 261 89 517 133 260 7 chrX 130102888 130103038 -46871102 - MER53 DNA DNA 0 189 2 865 215 49 68 chrX 130103038 130103125 -46871015 - MIR SINE MIR -173 89 2 2060 143 0 0 chrX 130103147 130103448 -46870692 + AluSx SINE Alu 1 301 -11 554 266 145 3 chrX 130103970 130104164 -46869976 + MIR SINE MIR 45 255 -7 184 240 60 20 chrX 130104277 130104327 -46869813 - MIR SINE MIR -163 99 48 755 256 6 11 chrX 130104788 130104964 -46869176 + MIR SINE MIR 17 191 -71 747 219 37 33 chrX 130104978 130105220 -46868920 - L1ME3A LINE L1 -2 6168 5926 213 259 52 0 chrX 130105220 130105278 -46868862 + MIR SINE MIR 187 247 -15 5018 12 0 0 chrX 130105452 130106019 -46868121 - L1PA2 LINE L1 -4 6151 5585 287 140 20 20 chrX 130106185 130106235 -46867905 + MIR3 SINE MIR 109 158 -50 6781 48 1 1 chrX 130106477 130107356 -46866784 - L1PA5 LINE L1 -1 6153 5275 404 285 16 0 chrX 130108149 130108272 -46865868 - MIR SINE MIR -2 260 136 1082 57 7 0 chrX 130109370 130109510 -46864630 + L1PA10 LINE L1 6022 6162 -6 720 213 18 0 chrX 130109563 130109727 -46864413 + L1ME2 LINE L1 5998 6164 0 212 239 0 0 chrX 130110197 130110252 -46863888 + MIR SINE MIR 98 151 -62 490 268 49 8 chrX 130110267 130110390 -46863750 - MIR SINE MIR -42 220 93 760 265 52 26 chrX 130110521 130110751 -46863389 + MIR SINE MIR 3 238 -24 1092 185 0 0 chrX 130110983 130111172 -46862968 - MER5A DNA MER1_type 0 189 1 206 333 53 30 chrX 130112938 130113070 -46861070 + L2 LINE L2 2624 2758 -556 1565 86 10 0 chrX 130113219 130113416 -46860724 + AluSc SINE Alu 66 264 -45 715 280 44 4 chrX 130114807 130115057 -46859083 + MIR SINE MIR 1 260 -2 306 290 77 33 chrX 130116070 130116253 -46857887 - MIR SINE MIR 0 262 72 607 352 88 22 chrX 130116301 130116710 -46857430 + L2 LINE L2 2399 2834 -480 196 333 80 60 chrX 130116936 130117086 -46857054 + L2 LINE L2 3115 3267 -5 4201 146 42 8 chrX 130117978 130118724 -46855416 + L1MB1 LINE L1 5397 6167 -1 287 102 51 51 chrX 130118794 130118884 -46855256 + (TA)n Simple_repeat Simple_repeat 1 93 -64 2501 161 27 0 chrX 130118884 130119289 -46854851 - MER47B DNA MER2_type 0 418 3 287 102 51 51 chrX 130119289 130119355 -46854785 + (TA)n Simple_repeat Simple_repeat 92 157 0 230 234 0 43 chrX 130119365 130119459 -46854681 - L1MC4 LINE L1 -1339 6703 6614 231 88 0 0 chrX 130119662 130119696 -46854444 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 247 307 23 0 chrX 130119721 130119809 -46854331 + CT-rich Low_complexity Low_complexity 70 159 0 2119 104 3 13 chrX 130120061 130120295 -46853845 + L1PA14 LINE L1 5844 6076 -85 590 100 0 0 chrX 130120295 130120375 -46853765 - MADE1 DNA Mariner 0 80 1 2119 104 3 13 chrX 130120375 130120456 -46853684 + L1PA14 LINE L1 6076 6156 -5 193 337 43 22 chrX 130121472 130121564 -46852576 - L2 LINE L2 -10 3262 3169 38260 83 6 8 chrX 130121572 130127729 -46846411 - L1PA6 LINE L1 -2 6152 11 675 45 0 0 chrX 130127940 130128028 -46846112 + L1PA2 LINE L1 6068 6155 0 1482 209 17 0 chrX 130128123 130128410 -46845730 + AluJo SINE Alu 3 294 -8 262 250 202 39 chrX 130129181 130129285 -46844855 - L2 LINE L2 -2 3270 3150 188 139 0 23 chrX 130129645 130129688 -46844452 + (GA)n Simple_repeat Simple_repeat 1 42 0 1531 109 4 12 chrX 130129922 130130178 -46843962 + L1MA5 LINE L1 6034 6287 -13 32 86 0 0 chrX 130130198 130130279 -46843861 + AT_rich Low_complexity Low_complexity 1 81 0 267 156 0 0 chrX 130132109 130132154 -46841986 - L2 LINE L2 -19 3294 3250 686 320 36 12 chrX 130132392 130132645 -46841495 + MIR SINE MIR 4 262 0 954 275 40 4 chrX 130133250 130133501 -46840639 - LTR16C LTR ERVL 0 491 232 1118 160 28 28 chrX 130133503 130133716 -46840424 - AluJo SINE Alu -15 297 85 253 338 62 35 chrX 130133716 130133861 -46840279 - LTR16C LTR ERVL -253 238 90 194 236 28 42 chrX 130134024 130134096 -46840044 - L2 LINE L2 -1885 1429 1359 679 288 107 5 chrX 130134885 130135100 -46839040 - MIR SINE MIR -24 238 2 710 240 189 0 chrX 130137142 130137359 -46836781 - MIR SINE MIR 0 262 5 240 262 98 0 chrX 130137555 130137616 -46836524 + MER20B DNA MER1_type 2 68 -715 * 508 241 65 30 chrX 130137614 130137846 -46836294 + MER20B DNA MER1_type 543 782 -1 197 261 0 0 chrX 130137849 130137895 -46836245 + MIR3 SINE MIR 155 200 -8 365 309 8 24 chrX 130138751 130138874 -46835266 + L2 LINE L2 3150 3270 -2 317 308 11 0 chrX 130139558 130139649 -46834491 + MIR3 SINE MIR 87 178 -30 445 299 8 22 chrX 130139661 130139795 -46834345 + MIR SINE MIR 18 149 -113 6393 59 5 1 chrX 130139980 130140790 -46833350 + L1PA10 LINE L1 5346 6158 -10 987 249 47 12 chrX 130141306 130141559 -46832581 + MIR SINE MIR 1 262 0 2039 101 19 6 chrX 130141811 130142128 -46832012 + L1PB1 LINE L1 5405 5725 -426 204 40 0 0 chrX 130142139 130142164 -46831976 + (TA)n Simple_repeat Simple_repeat 1 25 0 2701 73 3 0 chrX 130142166 130142524 -46831616 + L1PB1 LINE L1 5793 6151 0 2433 264 131 20 chrX 130143388 130144268 -46829872 + L2 LINE L2 1152 2128 -1186 1315 251 110 28 chrX 130144372 130145067 -46829073 + L2 LINE L2 2544 3296 -17 335 236 9 27 chrX 130145067 130145177 -46828963 + (TA)n Simple_repeat Simple_repeat 2 109 0 2988 232 16 35 chrX 130145179 130145982 -46828158 + L1MEc LINE L1 110 897 -5499 761 205 91 53 chrX 130145971 130146234 -46827906 + L1MEc LINE L1 1689 1961 -4435 * 39 0 0 0 chrX 130147258 130147297 -46826843 + AT_rich Low_complexity Low_complexity 1 39 0 6827 199 46 14 chrX 130147326 130148544 -46825596 - L1MA4 LINE L1 -7 7712 6535 1528 153 17 0 chrX 130148544 130148779 -46825361 + AluJo SINE Alu 1 239 -73 6827 199 46 14 chrX 130148779 130150120 -46824020 - L1MA4 LINE L1 -1184 6535 4985 658 161 0 56 chrX 130150154 130150297 -46823843 - L1MA3 LINE L1 -1 6304 6170 210 242 0 0 chrX 130150299 130150361 -46823779 + T-rich Low_complexity Low_complexity 1 62 0 19991 32 1 0 chrX 130150361 130153561 -46820579 - L1PA3 LINE L1 0 6155 2955 15888 41 1 3 chrX 130153563 130155543 -46818597 + L1PA3 LINE L1 976 2950 -3196 1527 154 15 0 chrX 130155542 130155808 -46818332 - L1MA4 LINE L1 -2568 4997 4728 * 1875 223 45 28 chrX 130155821 130156664 -46817476 - L1MA4 LINE L1 -3942 3623 2721 * 2661 193 21 35 chrX 130156660 130157288 -46816852 - L1MDb LINE L1 -1520 5124 4506 1432 255 39 14 chrX 130157287 130157773 -46816367 - L1M4 LINE L1 -1433 5211 4714 * 5317 238 51 31 chrX 130157787 130158133 -46816007 - L1 LINE L1 -2216 4428 4090 1535 208 10 0 chrX 130158133 130158427 -46815713 - AluJo SINE Alu -15 297 1 5317 238 51 31 chrX 130158427 130162030 -46812110 - L1PB1 LINE L1 -2554 4090 81 * 7786 170 18 32 chrX 130162028 130164240 -46809900 + L1PB1 LINE L1 4112 6289 -360 347 139 60 0 chrX 130164240 130164406 -46809734 + (TA)n Simple_repeat Simple_repeat 1 176 0 736 187 0 0 chrX 130164411 130164550 -46809590 - L1MDb LINE L1 -2394 4250 4112 369 232 0 0 chrX 130164654 130164796 -46809344 + (TA)n Simple_repeat Simple_repeat 1 142 0 1923 155 37 11 chrX 130164796 130165144 -46808996 + L1PB1 LINE L1 6278 6634 -15 7803 69 1 9 chrX 130165146 130165944 -46808196 - HERVL-A1 LTR ERVL -4667 987 197 1853 119 0 4 chrX 130165944 130166195 -46807945 - AluSx SINE Alu -17 295 46 7803 69 1 9 chrX 130166195 130166391 -46807749 - HERVL-A1 LTR ERVL -5457 197 1 3161 71 54 5 chrX 130166391 130166427 -46807713 - MLT2A1 LTR ERVL 0 444 411 635 0 13 0 chrX 130166427 130166502 -46807638 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 3161 71 54 5 chrX 130166502 130166888 -46807252 - MLT2A1 LTR ERVL -33 411 1 311 182 101 101 chrX 130166892 130166991 -46807149 - MLT1B LTR MaLR -291 99 1 2121 244 48 46 chrX 130167141 130167773 -46806367 - L1MDb LINE L1 -3022 3622 2993 256 103 0 0 chrX 130167773 130167812 -46806328 - MADE1 DNA Mariner -41 39 1 2121 244 48 46 chrX 130167812 130168313 -46805827 - L1MDb LINE L1 -3651 2993 2495 1039 168 61 137 chrX 130168313 130168706 -46805434 + MLT1A1 LTR MaLR 3 365 0 2121 244 48 46 chrX 130168706 130169480 -46804660 - L1MDb LINE L1 -4149 2495 1676 2327 100 12 0 chrX 130169480 130169811 -46804329 - L1PA13 LINE L1 -1 6162 5828 231 36 0 0 chrX 130169811 130169839 -46804301 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1237 91 0 0 chrX 130169841 130169995 -46804145 - AluSg/x SINE Alu -29 283 130 281 263 47 52 chrX 130170014 130170186 -46803954 - L1MDb LINE L1 -4954 1690 1521 550 307 156 33 chrX 130171447 130171929 -46802211 - MLT1K LTR MaLR -6 582 42 739 299 129 25 chrX 130174084 130174819 -46799321 + L1MDa LINE L1 1283 2134 -4471 21 0 0 0 chrX 130174877 130174898 -46799242 + AT_rich Low_complexity Low_complexity 1 21 0 1492 216 84 7 chrX 130175069 130175151 -46798989 - Charlie1a DNA MER1_type -1306 1455 1381 276 77 0 0 chrX 130175151 130175190 -46798950 + (TA)n Simple_repeat Simple_repeat 2 40 0 1492 216 84 7 chrX 130175190 130175571 -46798569 - Charlie1a DNA MER1_type -1380 1381 956 5444 86 4 1 chrX 130175573 130176360 -46797780 - L1PA13 LINE L1 -15 6148 5360 2416 160 29 134 chrX 130176362 130176523 -46797617 - Charlie1a DNA MER1_type -1803 958 782 1579 149 19 15 chrX 130176523 130176785 -46797355 - AluSx SINE Alu -49 263 1 2416 160 29 134 chrX 130176785 130176819 -46797321 - Charlie1a DNA MER1_type -1979 782 746 1795 157 3 7 chrX 130176819 130177105 -46797035 + AluJb SINE Alu 1 285 -27 2416 160 29 134 chrX 130177105 130177671 -46796469 - Charlie1a DNA MER1_type -2015 746 276 513 190 0 0 chrX 130177671 130177771 -46796369 - Charlie1a DNA MER1_type -1301 154 55 551 101 112 0 chrX 130177773 130177862 -46796278 + 5S rRNA rRNA 2 100 -21 270 314 0 0 chrX 130177850 130177920 -46796220 - Charlie1a DNA MER1_type -1384 71 2 * 2014 138 3 10 chrX 130177967 130178258 -46795882 + AluSx SINE Alu 3 291 -21 555 358 46 20 chrX 130179059 130179361 -46794779 - L3 LINE CR1 -1 1576 1267 402 267 14 111 chrX 130179512 130179729 -46794411 + MLT1L LTR MaLR 2 197 -418 233 200 94 12 chrX 130180041 130180126 -46794014 + MLT1L LTR MaLR 516 607 -8 656 288 118 0 chrX 130180325 130180537 -46793603 - MIR SINE MIR -6 256 20 355 276 119 8 chrX 130180751 130180885 -46793255 + MIR SINE MIR 70 218 -44 310 214 183 24 chrX 130180937 130181063 -46793077 - MER97a DNA MER1_type? -715 179 34 220 292 83 14 chrX 130181696 130181768 -46792372 + L2 LINE L2 3185 3261 -52 248 302 0 0 chrX 130181929 130181992 -46792148 + (TATG)n Simple_repeat Simple_repeat 1 63 0 3150 225 52 28 chrX 130182534 130183668 -46790472 - L1M4 LINE L1 -1914 4232 3072 27406 55 2 3 chrX 130183673 130187192 -46786948 + HERV17 LTR ERV1 3635 7150 -1476 299 26 0 0 chrX 130187185 130187223 -46786917 + HERV17 LTR ERV1 7511 7548 -1078 * 1964 79 0 0 chrX 130187213 130187478 -46786662 + HERV17 LTR ERV1 8335 8599 -27 1875 112 4 0 chrX 130187478 130187754 -46786386 + L1PB1 LINE L1 5867 6143 -8 1055 92 35 29 chrX 130187757 130187777 -46786363 + L1MA3 LINE L1 6130 6148 -157 2038 147 3 22 chrX 130187777 130188091 -46786049 + AluSx SINE Alu 1 308 -4 1055 92 35 29 chrX 130188091 130188244 -46785896 + L1MA3 LINE L1 6148 6304 -1 429 239 0 39 chrX 130188247 130188377 -46785763 + L1M4 LINE L1 2948 3072 -3074 12232 199 49 11 chrX 130188378 130191237 -46782903 - L1PBa LINE L1 -1235 5627 2880 240 35 0 0 chrX 130191237 130191266 -46782874 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 12232 199 49 11 chrX 130191266 130193668 -46780472 - L1PBa LINE L1 -3982 2880 6 5344 123 19 34 chrX 130193681 130194582 -46779558 - L1MA3 LINE L1 -166 7558 6691 2238 111 18 47 chrX 130194582 130194968 -46779172 - THE1C LTR MaLR 0 375 1 5344 123 19 34 chrX 130194968 130195455 -46778685 - L1MA3 LINE L1 -1033 6691 6198 * 19438 126 34 2 chrX 130195441 130196860 -46777280 - L1MA3 LINE L1 -4335 3230 1857 204 40 0 0 chrX 130196860 130196885 -46777255 + (TC)n Simple_repeat Simple_repeat 2 26 0 19438 126 34 2 chrX 130196885 130198586 -46775554 - L1MA3 LINE L1 -5708 1857 12 737 211 11 0 chrX 130198586 130198776 -46775364 - L1M4 LINE L1 -3188 3769 3578 1940 256 9 75 chrX 130198786 130199356 -46774784 - L1M4 LINE L1 -6223 636 112 2317 58 4 0 chrX 130199356 130199662 -46774478 - AluY SINE Alu 0 311 5 1940 256 9 75 chrX 130199662 130199742 -46774398 - L1M4 LINE L1 -6747 112 28 324 102 0 0 chrX 130201161 130201210 -46772930 + (CA)n Simple_repeat Simple_repeat 1 49 0 953 102 12 12 chrX 130202050 130202217 -46771923 - L1MA7 LINE L1 0 6291 6125 7628 44 0 1 chrX 130202217 130203928 -46770212 + L1PA5 LINE L1 4435 6141 -13 2855 130 14 16 chrX 130203931 130204432 -46769708 - L1MA7 LINE L1 -152 6139 5640 480 341 58 9 chrX 130204433 130204656 -46769484 - MLT1K LTR MaLR -322 266 33 440 329 38 6 chrX 130205527 130205685 -46768455 - MIR SINE MIR 0 262 100 860 176 58 125 chrX 130206998 130207374 -46766766 - L1MC4 LINE L1 -1 8041 7691 280 359 78 0 chrX 130207600 130207767 -46766373 + HERV16 LTR ERVL 1172 1351 -3645 2809 146 128 91 chrX 130207796 130207947 -46766193 - MER52C LTR ERV1 0 1278 1134 468 139 0 23 chrX 130207947 130208054 -46766086 + AluSg/x SINE Alu 216 309 0 2809 146 128 91 chrX 130208054 130208937 -46765203 - MER52C LTR ERV1 -144 1134 1 1085 337 54 16 chrX 130209301 130209874 -46764266 + HERV16 LTR ERVL 1882 2476 -3178 318 352 77 0 chrX 130210022 130210244 -46763896 + HERV16 LTR ERVL 2734 2956 -2040 564 347 38 30 chrX 130210246 130210618 -46763522 + HERV16 LTR ERVL 3248 3622 -2142 2050 94 7 36 chrX 130211018 130211432 -46762708 - L1P LINE L1 -743 5403 5017 2473 108 29 0 chrX 130211433 130211814 -46762326 + L1PA13 LINE L1 5437 5828 -335 275 254 0 45 chrX 130211896 130211963 -46762177 + MER91 DNA MER1_type 133 196 0 2187 71 0 7 chrX 130212465 130212745 -46761395 + AluY SINE Alu 34 311 0 704 228 84 0 chrX 130212867 130213034 -46761106 - MER117 DNA MER1_type -11 186 6 249 33 0 0 chrX 130213314 130213344 -46760796 + (TG)n Simple_repeat Simple_repeat 2 31 0 256 167 39 10 chrX 130213798 130213900 -46760240 + (TA)n Simple_repeat Simple_repeat 2 106 0 776 217 43 34 chrX 130213916 130214123 -46760017 + MER3 DNA MER1_type 1 209 0 243 242 48 0 chrX 130215608 130215670 -46758470 + U6 snRNA snRNA 1 65 -42 772 185 7 7 chrX 130216640 130216775 -46757365 + MER5A DNA MER1_type 2 136 -53 1429 186 68 0 chrX 130216800 130217107 -46757033 - L1MC4 LINE L1 -195 7847 7520 279 283 0 0 chrX 130217125 130217185 -46756955 + MER5A DNA MER1_type 130 189 0 243 61 0 0 chrX 130217474 130217507 -46756633 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 224 258 32 16 chrX 130217807 130217869 -46756271 - L2 LINE L2 -228 3085 3023 250 208 0 0 chrX 130217984 130218032 -46756108 + L2 LINE L2 2231 2278 -1036 1664 197 52 20 chrX 130220076 130220483 -46753657 + L1MB7 LINE L1 5764 6183 -1 354 137 0 0 chrX 130220619 130220704 -46753436 - Alu SINE Alu 0 318 234 295 329 150 29 chrX 130220805 130221045 -46753095 + L2 LINE L2 2595 2863 -451 644 176 195 6 chrX 130221089 130221248 -46752892 - MER53 DNA DNA 0 189 1 363 289 193 41 chrX 130221250 130221468 -46752672 + L2 LINE L2 3019 3269 -3 309 26 0 0 chrX 130221928 130221966 -46752174 + (TG)n Simple_repeat Simple_repeat 2 39 0 1361 133 96 96 chrX 130222632 130222934 -46751206 - AluJb SINE Alu -10 302 1 370 269 32 0 chrX 130222954 130223047 -46751093 - MIR3 SINE MIR -28 180 85 1986 145 0 0 chrX 130223974 130224310 -46749830 + AluSx SINE Alu 1 336 0 197 317 67 0 chrX 130224528 130224588 -46749552 - L2 LINE L2 -9 3263 3200 217 264 100 55 chrX 130224680 130224790 -46749350 + MIR SINE MIR 36 150 -58 214 200 200 0 chrX 130225474 130225539 -46748601 + MIR SINE MIR 113 190 -72 181 324 123 44 chrX 130226292 130226496 -46747644 - L2 LINE L2 -214 3058 2839 782 214 29 67 chrX 130227211 130227449 -46746691 - L2 LINE L2 -2 3311 3083 25 0 0 0 chrX 130227458 130227483 -46746657 + AT_rich Low_complexity Low_complexity 1 25 0 2029 110 0 37 chrX 130227528 130227827 -46746313 - AluSx SINE Alu -24 288 1 692 269 14 31 chrX 130227837 130228060 -46746080 - L2 LINE L2 -245 3068 2850 521 128 0 0 chrX 130228090 130228168 -46745972 + AluJ/FLAM SINE Alu 1 78 -234 825 256 35 0 chrX 130228224 130228427 -46745713 - L2 LINE L2 -544 2770 2561 6760 213 49 26 chrX 130228626 130229044 -46745096 - L1MB7 LINE L1 -2 6182 5775 1858 74 0 4 chrX 130229044 130229273 -46744867 - AluSg SINE Alu -82 228 1 6760 213 49 26 chrX 130229273 130230781 -46743359 - L1MB7 LINE L1 -409 5775 4188 1998 147 0 25 chrX 130230781 130231101 -46743039 - AluJo SINE Alu 0 312 1 6760 213 49 26 chrX 130231101 130231784 -46742356 - L1MB7 LINE L1 -1996 4188 3522 1671 168 17 84 chrX 130232576 130232994 -46741146 - MLT1B LTR MaLR 0 390 1 468 225 120 0 chrX 130233943 130234085 -46740055 + L1MC4a LINE L1 5989 6147 -1661 196 313 92 53 chrX 130235251 130235382 -46738758 - L2 LINE L2 -5 3267 3132 1511 191 10 14 chrX 130235393 130235681 -46738459 - AluJo SINE Alu -14 298 12 1727 195 0 17 chrX 130236115 130236407 -46737733 + AluJo SINE Alu 3 289 -23 852 38 0 0 chrX 130237485 130237590 -46736550 + L1PA4 LINE L1 6048 6152 -3 2175 111 0 3 chrX 130237995 130238316 -46735824 - AluSg1 SINE Alu 0 309 1 1874 142 7 0 chrX 130238553 130238834 -46735306 - AluJb SINE Alu -27 285 3 411 230 16 56 chrX 130239985 130240111 -46734029 - MIR3 SINE MIR -51 157 37 21 0 0 0 chrX 130242355 130242376 -46731764 + AT_rich Low_complexity Low_complexity 1 21 0 181 111 67 0 chrX 130242953 130242998 -46731142 + (TATAA)n Simple_repeat Simple_repeat 2 49 0 512 170 20 20 chrX 130243168 130243268 -46730872 + MER94 DNA DNA 1 100 -34 24 0 0 0 chrX 130245235 130245259 -46728881 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 130245714 130245736 -46728404 + AT_rich Low_complexity Low_complexity 1 22 0 273 331 84 24 chrX 130247283 130247449 -46726691 + MER5B DNA MER1_type 2 177 -1 2208 94 24 0 chrX 130249037 130249324 -46724816 + AluSx SINE Alu 1 294 -18 438 69 0 0 chrX 130249916 130249974 -46724166 + (TA)n Simple_repeat Simple_repeat 2 59 0 1495 254 109 22 chrX 130250086 130250615 -46723525 - L2 LINE L2 0 3313 2742 463 352 16 16 chrX 130253519 130253701 -46720439 - MIR3 SINE MIR -1 207 26 404 326 162 17 chrX 130254044 130254403 -46719737 + L3b LINE CR1 1105 1515 -68 334 315 63 0 chrX 130254633 130254744 -46719396 - MIR3 SINE MIR -13 195 78 447 237 58 14 chrX 130254946 130255085 -46719055 - MER20B DNA MER1_type -614 169 25 1871 154 36 22 chrX 130255144 130255501 -46718639 - MLT1A1 LTR MaLR 0 365 4 2188 116 78 3 chrX 130256033 130256403 -46717737 + L1MA2 LINE L1 5907 6304 0 1785 163 0 3 chrX 130258469 130258763 -46715377 + AluJo SINE Alu 18 310 -2 375 141 120 33 chrX 130258803 130258895 -46715245 + L1MB3 LINE L1 6084 6183 0 186 248 115 80 chrX 130258969 130259082 -46715058 + L2 LINE L2 2918 3034 -238 438 53 0 0 chrX 130261081 130261138 -46713002 + (CA)n Simple_repeat Simple_repeat 2 58 0 306 330 64 0 chrX 130261501 130261595 -46712545 + L2 LINE L2 3149 3248 -24 1672 266 39 14 chrX 130262695 130263486 -46710654 + L1M2a LINE L1 1534 2362 -4736 413 358 34 7 chrX 130263979 130264127 -46710013 - L2 LINE L2 -9 3263 3112 3176 65 5 0 chrX 130267354 130267768 -46706372 + L1PA7 LINE L1 5736 6151 -3 444 316 32 19 chrX 130268304 130268462 -46705678 + MER5B DNA MER1_type 3 162 -16 266 308 31 92 chrX 130268306 130268501 -46705639 - MER5A DNA MER1_type -5 184 2 * 1210 170 65 44 chrX 130268726 130268955 -46705185 - MER8 DNA MER2_type -4 235 2 1800 156 0 28 chrX 130270081 130270402 -46703738 + AluJb SINE Alu 1 312 0 187 328 0 33 chrX 130270518 130270579 -46703561 - L3 LINE CR1 -5 1572 1514 387 332 42 32 chrX 130270725 130270915 -46703225 - MIR3 SINE MIR -7 201 10 1177 161 52 19 chrX 130271115 130271382 -46702758 - L1MA8 LINE L1 -3 6288 6013 922 153 54 39 chrX 130271382 130271585 -46702555 + L1MA7 LINE L1 5833 6038 -253 208 305 49 12 chrX 130273868 130273950 -46700190 + MIR3 SINE MIR 121 205 -3 699 164 4 0 chrX 130274435 130274659 -46699481 + (TA)n Simple_repeat Simple_repeat 1 248 -15 189 0 0 0 chrX 130274659 130274680 -46699460 + (TC)n Simple_repeat Simple_repeat 2 22 0 699 164 4 0 chrX 130274680 130274697 -46699443 + (TA)n Simple_repeat Simple_repeat 248 263 0 342 0 0 0 chrX 130274703 130274741 -46699399 + (GA)n Simple_repeat Simple_repeat 1 38 0 799 175 82 31 chrX 130279106 130279139 -46695001 + MER105 DNA DNA 1 31 -173 537 248 104 40 chrX 130279139 130279341 -46694799 - MER58C DNA MER1_type 0 215 1 799 175 82 31 chrX 130279341 130279501 -46694639 + MER105 DNA DNA 31 204 0 192 40 0 0 chrX 130280328 130280353 -46693787 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chrX 130281576 130281599 -46692541 + (A)n Simple_repeat Simple_repeat 1 23 0 2094 129 0 0 chrX 130282770 130283056 -46691084 - AluSx SINE Alu -26 286 1 357 195 19 136 chrX 130283081 130283235 -46690905 - MARNA DNA Mariner -196 390 255 402 21 0 0 chrX 130283492 130283539 -46690601 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 233 12 12 chrX 130283868 130283954 -46690186 + (TAA)n Simple_repeat Simple_repeat 2 87 0 761 240 50 0 chrX 130284408 130284587 -46689553 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chrX 130284709 130284730 -46689410 + AT_rich Low_complexity Low_complexity 1 21 0 2568 27 40 0 chrX 130284775 130285074 -46689066 + AluY SINE Alu 1 311 0 33 0 0 0 chrX 130285224 130285257 -46688883 + AT_rich Low_complexity Low_complexity 1 33 0 504 15 0 15 chrX 130285260 130285326 -46688814 - L1PA2 LINE L1 -10 6145 6081 2628 144 78 23 chrX 130287676 130288132 -46686008 + L1MA5 LINE L1 5761 6249 -51 1871 155 3 3 chrX 130288132 130288423 -46685717 + AluJb SINE Alu 1 291 -21 2628 144 78 23 chrX 130288423 130288478 -46685662 + L1MA5 LINE L1 6249 6300 0 264 178 0 0 chrX 130290818 130290863 -46683277 + L2 LINE L2 3263 3307 -6 193 329 114 60 chrX 130290863 130291204 -46682936 + L2 LINE L2 2265 2649 -665 1721 167 6 41 chrX 130291204 130291522 -46682618 + AluJo SINE Alu 1 307 -5 193 329 114 60 chrX 130291522 130291743 -46682397 + L2 LINE L2 2649 2857 -457 1724 111 22 19 chrX 130291854 130292125 -46682015 - Tigger5 DNA MER2_type 0 2323 2052 2385 153 106 70 chrX 130346864 130347045 -46627095 + LTR4 LTR ERV1 1 174 -414 2309 105 0 0 chrX 130347045 130347349 -46626791 + AluSq SINE Alu 1 304 -9 2385 153 106 70 chrX 130347349 130347735 -46626405 + LTR4 LTR ERV1 174 588 0 1016 208 9 22 chrX 130347762 130347993 -46626147 + L1MB5 LINE L1 5947 6174 0 809 182 0 0 chrX 130348102 130348245 -46625895 + FLAM_C SINE Alu 1 143 0 229 109 22 22 chrX 130348497 130348543 -46625597 + LTR66 LTR ERVL 393 438 -172 369 225 0 0 chrX 130348548 130348637 -46625503 + (CATATA)n Simple_repeat Simple_repeat 2 90 0 1417 220 0 3 chrX 130348637 130348923 -46625217 - AluJo SINE Alu -27 285 1 1903 109 14 7 chrX 130349177 130349452 -46624688 - AluSc SINE Alu -12 297 21 2193 123 0 0 chrX 130350502 130350803 -46623337 + AluSx SINE Alu 5 305 -7 2404 65 7 29 chrX 130351558 130351868 -46622272 + AluY SINE Alu 2 304 -7 559 130 60 0 chrX 130351970 130352070 -46622070 - L1MA9 LINE L1 -413 5899 5794 226 157 0 39 chrX 130352070 130352121 -46622019 - LTR66 LTR ERVL -163 447 399 263 188 0 16 chrX 130352122 130352186 -46621954 + (TA)n Simple_repeat Simple_repeat 1 63 0 3157 158 11 0 chrX 130352193 130352787 -46621353 - L1MA9 LINE L1 -528 5784 5185 5668 124 7 9 chrX 130352795 130353303 -46620837 - L1PA16 LINE L1 0 6166 5659 2072 138 64 25 chrX 130353303 130353664 -46620476 - THE1C LTR MaLR 0 375 1 5668 124 7 9 chrX 130353664 130354641 -46619499 - L1PA16 LINE L1 -507 5659 4726 976 154 248 23 chrX 130354644 130354685 -46619455 - L1MA9 LINE L1 -1465 4681 4651 2397 102 0 0 chrX 130354685 130354990 -46619150 - AluSg SINE Alu -5 305 1 976 154 248 23 chrX 130354990 130355254 -46618886 - L1MA9 LINE L1 -1495 4651 4307 * 1391 172 10 45 chrX 130355245 130355536 -46618604 + L1 LINE L1 3919 4199 -1947 242 163 0 0 chrX 130355537 130355580 -46618560 + Alu SINE Alu 246 288 -14 34 0 0 0 chrX 130355580 130355614 -46618526 + AT_rich Low_complexity Low_complexity 1 34 0 399 180 123 41 chrX 130355639 130355761 -46618379 + L1 LINE L1 4182 4313 -1833 2142 102 3 0 chrX 130355774 130356080 -46618060 - AluY SINE Alu 0 307 1 689 270 11 0 chrX 130357053 130357227 -46616913 + L1MC4a LINE L1 5689 5864 -1944 1225 77 18 0 chrX 130357423 130357593 -46616547 - L1MA4A LINE L1 0 6303 6131 2835 113 3 3 chrX 130357770 130358134 -46616006 - THE1B LTR MaLR 0 364 1 1126 206 62 47 chrX 130358501 130358840 -46615300 + MLT1A2 LTR MaLR 18 361 -13 2873 141 34 8 chrX 130358910 130359387 -46614753 - L1MA9 LINE L1 -5 6307 5819 1059 201 144 36 chrX 130360097 130360389 -46613751 + L1MB5 LINE L1 5851 6174 0 734 198 0 0 chrX 130360499 130360615 -46613525 + AluJo/FLAM SINE Alu 1 116 -186 2231 92 3 0 chrX 130360615 130360908 -46613232 - AluY SINE Alu -16 295 2 1339 207 14 21 chrX 130361279 130361564 -46612576 - AluJo SINE Alu -19 283 1 181 114 0 45 chrX 130362018 130362062 -46612078 + (CAT)n Simple_repeat Simple_repeat 1 42 0 210 250 45 0 chrX 130363536 130363624 -46610516 + (TA)n Simple_repeat Simple_repeat 1 92 0 1391 208 7 4 chrX 130363951 130364230 -46609910 + AluJo SINE Alu 1 280 -32 342 0 0 0 chrX 130364230 130364268 -46609872 + (TA)n Simple_repeat Simple_repeat 2 39 0 5273 98 31 34 chrX 130364435 130365272 -46608868 - HERVH LTR ERV1 -6878 835 1 2747 79 89 42 chrX 130365274 130365702 -46608438 - LTR7 LTR ERV1 -2 448 1 443 188 0 0 chrX 130365949 130366034 -46608106 - AluS SINE Alu 0 312 228 2195 116 3 0 chrX 130366111 130366421 -46607719 + AluSq SINE Alu 1 311 -2 1383 201 36 11 chrX 130367457 130367756 -46606384 + AluJb SINE Alu 1 306 0 3375 154 17 4 chrX 130367880 130368399 -46605741 + MER1A DNA MER1_type 1 526 -1 711 191 8 0 chrX 130368488 130368614 -46605526 + MER50 LTR ERV1 2 128 -606 1521 101 24 67 chrX 130368614 130368778 -46605362 + HERVH LTR ERV1 3416 3563 -2383 2439 88 0 0 chrX 130368778 130369075 -46605065 + AluSg SINE Alu 1 297 -13 1521 101 24 67 chrX 130369075 130369208 -46604932 + HERVH LTR ERV1 3563 3700 -2246 1591 172 8 0 chrX 130369313 130369581 -46604559 + HERVH LTR ERV1 4880 5149 -2564 1247 121 72 10 chrX 130369582 130369789 -46604351 + HERVH LTR ERV1 5600 5819 -1894 * 2483 92 48 13 chrX 130369787 130370166 -46603974 + HERVH LTR ERV1 7322 7713 0 2716 83 98 5 chrX 130370166 130370576 -46603564 + LTR7 LTR ERV1 1 448 -2 1686 133 11 19 chrX 130371274 130371544 -46602596 + AluSq SINE Alu 1 268 -45 207 149 15 30 chrX 130371560 130371627 -46602513 + (CATATA)n Simple_repeat Simple_repeat 5 70 0 2265 110 7 0 chrX 130371953 130372262 -46601878 + AluSx SINE Alu 1 311 -1 1548 194 32 4 chrX 130372273 130372552 -46601588 + AluJb SINE Alu 1 287 -25 1347 180 19 13 chrX 130373026 130373387 -46600753 + MER51-int LTR ERV1 512 957 -6859 2337 73 30 0 chrX 130374006 130374308 -46599832 + AluSp SINE Alu 1 311 -2 2281 61 11 0 chrX 130374550 130374853 -46599287 + AluSc SINE Alu 1 306 0 2272 102 0 0 chrX 130375557 130375851 -46598289 - AluSg SINE Alu -15 295 2 192 328 144 8 chrX 130377094 130377219 -46596921 - MIR SINE MIR -48 214 73 599 232 16 0 chrX 130377271 130377396 -46596744 - L2 LINE L2 -10 3303 3177 216 158 0 0 chrX 130378800 130378838 -46595302 + GA-rich Low_complexity Low_complexity 3 40 0 193 374 11 0 chrX 130378905 130378996 -46595144 - MIR SINE MIR -73 189 98 305 314 73 93 chrX 130379006 130379553 -46594587 + L2 LINE L2 2713 3251 -21 374 203 8 110 chrX 130380134 130380252 -46593888 + MER5C DNA MER1_type 1 106 -218 869 68 40 23 chrX 130380363 130380417 -46593723 + (TCC)n Simple_repeat Simple_repeat 1 233 0 869 68 40 23 chrX 130380417 130380593 -46593547 + (TCC)n Simple_repeat Simple_repeat 2 180 0 29913 105 13 56 chrX 130381213 130387642 -46586498 + L1PA7 LINE L1 18 6154 0 35 24 0 0 chrX 130387642 130387684 -46586456 + AT_rich Low_complexity Low_complexity 1 42 0 1720 172 3 17 chrX 130387800 130388090 -46586050 + AluJb SINE Alu 1 286 -26 246 333 60 8 chrX 130388753 130388870 -46585270 + L2 LINE L2 3150 3272 0 382 335 90 0 chrX 130389409 130389576 -46584564 + MIR SINE MIR 70 251 -11 2855 24 0 3 chrX 130389923 130390255 -46583885 - L1PA5 LINE L1 -3 6151 5821 491 183 10 0 chrX 130390962 130391066 -46583074 - L1PA16 LINE L1 -132 6034 5930 29 60 0 0 chrX 130391084 130391134 -46583006 + AT_rich Low_complexity Low_complexity 1 50 0 3225 92 18 0 chrX 130391231 130391678 -46582462 + L1PA10 LINE L1 5703 6157 -11 1183 191 81 21 chrX 130391864 130392099 -46582041 - AluJb SINE Alu -12 300 52 188 386 68 0 chrX 130392790 130392878 -46581262 - L2 LINE L2 -41 3231 3138 521 246 127 37 chrX 130393701 130393945 -46580195 - L1ME1 LINE L1 -5 6161 5896 224 222 37 19 chrX 130393952 130394006 -46580134 + MER5B DNA MER1_type 124 178 0 268 337 31 10 chrX 130394506 130394604 -46579536 + MIR3 SINE MIR 104 203 -5 392 343 103 33 chrX 130397418 130397814 -46576326 - L2 LINE L2 -532 2782 2359 259 290 60 0 chrX 130398085 130398185 -46575955 + L1MEc LINE L1 1632 1737 -4659 1984 74 37 17 chrX 130398186 130398484 -46575656 + L1PA13 LINE L1 5855 6158 -5 462 125 0 0 chrX 130398539 130398619 -46575521 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1006 79 26 0 chrX 130398620 130398772 -46575368 + (TTTC)n Simple_repeat Simple_repeat 4 159 0 1814 166 0 0 chrX 130398772 130399050 -46575090 - AluSx SINE Alu -32 280 3 193 214 143 57 chrX 130400720 130400790 -46573350 - L3 LINE CR1 -976 601 526 3604 186 28 10 chrX 130400950 130401744 -46572396 - L1MB7 LINE L1 -62 6620 5813 1304 193 0 5 chrX 130401750 130401962 -46572178 - AluJo SINE Alu -30 282 72 439 131 12 0 chrX 130401971 130402055 -46572085 - L1PA15 LINE L1 -1 6164 6080 6431 246 59 25 chrX 130402058 130402529 -46571611 - L1MB7 LINE L1 -819 5825 5372 10566 44 35 0 chrX 130402529 130404576 -46569564 + L1PA4 LINE L1 4073 6151 -4 6431 246 59 25 chrX 130404576 130404768 -46569372 - L1MB7 LINE L1 -1272 5372 5188 2091 118 3 0 chrX 130404768 130405057 -46569083 - AluSx SINE Alu -22 290 1 6431 246 59 25 chrX 130405057 130405331 -46568809 - L1MB7 LINE L1 -1456 5188 4925 198 0 0 0 chrX 130405331 130405353 -46568787 + (TG)n Simple_repeat Simple_repeat 1 22 0 6431 246 59 25 chrX 130405353 130407316 -46566824 - L1MB7 LINE L1 -1719 4925 2737 1837 275 25 33 chrX 130407311 130407951 -46566189 - L1MB7 LINE L1 -5752 790 156 * 9132 214 57 71 chrX 130408021 130408679 -46565461 + L1MCa LINE L1 20 685 -5741 1584 200 60 17 chrX 130408679 130409029 -46565111 + MLT1A1 LTR MaLR 1 365 0 9132 214 57 71 chrX 130409029 130409370 -46564770 + L1MCa LINE L1 685 1029 -5397 1356 84 5 5 chrX 130409370 130409560 -46564580 - L1PA7 LINE L1 -6 6148 5959 9132 214 57 71 chrX 130409560 130411161 -46562979 + L1MCa LINE L1 1029 2650 -3776 1958 165 128 8 chrX 130411161 130411543 -46562597 + MSTA LTR MaLR 1 428 0 9132 214 57 71 chrX 130411543 130412571 -46561569 + L1MCa LINE L1 2650 3691 -2735 2037 140 7 0 chrX 130412571 130412864 -46561276 + AluSx SINE Alu 5 299 -13 9132 214 57 71 chrX 130412864 130414822 -46559318 + L1MCa LINE L1 3691 5531 -895 32842 64 95 11 chrX 130414826 130419343 -46554797 + L1PA5 LINE L1 4 5116 -1038 251 182 0 0 chrX 130419343 130419415 -46554725 + Alu SINE Alu 238 309 0 32842 64 95 11 chrX 130419415 130420392 -46553748 + L1PA5 LINE L1 5116 6009 -145 459 78 0 0 chrX 130420394 130420458 -46553682 + L1PA5 LINE L1 6091 6154 0 4546 169 39 51 chrX 130421907 130422903 -46551237 - L1MC2 LINE L1 -8 6336 5353 5628 180 20 13 chrX 130422933 130424210 -46549930 - L1MA7 LINE L1 -6 6285 5063 4168 23 8 0 chrX 130424214 130424701 -46549439 - L1PA4 LINE L1 -3 6152 5662 19151 55 27 0 chrX 130424701 130427197 -46546943 - L1P LINE L1 -950 5196 2633 287 265 0 0 chrX 130427983 130428051 -46546089 + MIR SINE MIR 170 237 -25 190 369 28 35 chrX 130428668 130428809 -46545331 - L2 LINE L2 0 3272 3133 204 79 0 53 chrX 130429260 130429298 -46544842 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 233 418 13 4 chrX 130429341 130429578 -46544562 - L2 LINE L2 -727 2587 2349 405 336 168 0 chrX 130429603 130429752 -46544388 - MER5A DNA MER1_type -6 183 10 195 42 0 0 chrX 130430723 130430747 -46543393 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 182 152 0 22 chrX 130431099 130431145 -46542995 + (TGAA)n Simple_repeat Simple_repeat 4 48 0 412 231 7 63 chrX 130431660 130431782 -46542358 - L1MA9 LINE L1 -44 6268 6154 2364 126 31 14 chrX 130431782 130432138 -46542002 + THE1B LTR MaLR 1 362 -2 412 231 7 63 chrX 130432138 130432158 -46541982 - L1MA9 LINE L1 -158 6154 6134 8533 115 51 9 chrX 130432164 130434469 -46539671 + L1PB1 LINE L1 3 2718 -4145 2070 136 72 17 chrX 130434469 130434814 -46539326 + THE1B LTR MaLR 1 364 0 11308 112 1 6 chrX 130434814 130436402 -46537738 + THE1B-int LTR MaLR 1 1580 0 1063 137 89 0 chrX 130436402 130436570 -46537570 + THE1B LTR MaLR 1 183 -181 894 140 0 109 chrX 130436573 130436766 -46537374 + AluSq SINE Alu 137 308 -5 1177 112 53 53 chrX 130436769 130436957 -46537183 + THE1B LTR MaLR 177 364 0 11553 183 9 8 chrX 130436974 130439473 -46534667 + L1PB1 LINE L1 2780 5278 -1584 5061 24 0 0 chrX 130439470 130440065 -46534075 - L1PA3 LINE L1 -1712 4434 3840 * 7795 31 0 0 chrX 130440065 130441767 -46532373 + L1PA3 LINE L1 4452 6152 -3 29 0 0 0 chrX 130441767 130441796 -46532344 + AT_rich Low_complexity Low_complexity 1 29 0 6013 151 14 4 chrX 130441802 130443031 -46531109 + L1PB1 LINE L1 5265 6514 -353 477 50 0 0 chrX 130443031 130443091 -46531049 + (TA)n Simple_repeat Simple_repeat 1 60 0 6013 151 14 4 chrX 130443091 130443449 -46530691 + L1PB1 LINE L1 6514 6867 0 850 250 9 5 chrX 130443459 130443683 -46530457 - L1MA9 LINE L1 -164 6148 5924 227 270 69 58 chrX 130447564 130447738 -46526402 + L1ME LINE L1 1545 1720 -4676 2664 155 2 16 chrX 130448104 130448542 -46525598 + MSTB1 LTR MaLR 1 432 0 1624 280 69 81 chrX 130448639 130449390 -46524750 + L1ME LINE L1 2190 2949 -3266 7661 23 0 0 chrX 130449390 130450963 -46523177 - L1PA4 LINE L1 0 6155 4587 1624 280 69 81 chrX 130450963 130451552 -46522588 + L1ME LINE L1 2949 3544 -2671 2061 119 74 8 chrX 130451552 130451904 -46522236 - THE1C LTR MaLR 0 375 1 1624 280 69 81 chrX 130451904 130452088 -46522052 + L1ME LINE L1 3544 3729 -2486 314 23 45 0 chrX 130452088 130452132 -46522008 - MADE1 DNA Mariner -34 46 1 1624 280 69 81 chrX 130452132 130452831 -46521309 + L1ME LINE L1 3729 4430 -1785 584 152 19 29 chrX 130452837 130452942 -46521198 - FRAM SINE Alu -22 154 51 414 0 0 0 chrX 130452942 130452988 -46521152 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 234 121 0 0 chrX 130452990 130453023 -46521117 - Alu SINE Alu -17 116 84 317 229 102 25 chrX 130453047 130453165 -46520975 + L1ME LINE L1 4450 4576 -1639 389 285 96 23 chrX 130453183 130453443 -46520697 + L1ME LINE L1 4603 4881 -1334 2182 139 0 0 chrX 130453513 130453867 -46520273 + AluSx SINE Alu 1 354 0 25 0 0 0 chrX 130453928 130453953 -46520187 + AT_rich Low_complexity Low_complexity 1 25 0 437 261 71 54 chrX 130454078 130454195 -46519945 + L1ME LINE L1 5268 5382 -849 1794 122 92 18 chrX 130454195 130454530 -46519610 + MER46B DNA MER2_type 1 235 -1 437 261 71 54 chrX 130454530 130454711 -46519429 + L1ME LINE L1 5382 5571 -660 2348 136 56 30 chrX 130454802 130455321 -46518819 - MLT2A2 LTR ERVL 0 554 1 230 203 51 76 chrX 130455325 130455404 -46518736 + L1ME LINE L1 5818 5894 -345 207 0 0 0 chrX 130455896 130455919 -46518221 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 218 195 117 78 chrX 130456298 130456375 -46517765 - L2 LINE L2 0 3272 3193 10176 24 0 0 chrX 130456585 130458557 -46515583 + L1PA2 LINE L1 4184 6155 0 345 307 133 21 chrX 130458763 130459004 -46515136 - L1M4 LINE L1 -2267 3879 3612 344 338 78 7 chrX 130459013 130459155 -46514985 - MER5A DNA MER1_type 0 189 27 602 226 74 30 chrX 130459611 130459997 -46514143 - L1ME3A LINE L1 -8 6162 5716 3110 88 0 2 chrX 130460106 130460528 -46513612 + L1PA8A LINE L1 5709 6129 -2 4054 127 24 6 chrX 130460649 130461278 -46512862 - L1PA15 LINE L1 -21 6144 5505 12467 184 21 27 chrX 130461285 130461502 -46512638 - L1PA12 LINE L1 -1116 6468 6251 1961 142 0 0 chrX 130461502 130461783 -46512357 - AluSx SINE Alu 0 312 32 12467 184 21 27 chrX 130461783 130461801 -46512339 - L1PA12 LINE L1 -1333 6251 6234 258 139 23 0 chrX 130461801 130461844 -46512296 - AluSx SINE Alu -257 44 1 12467 184 21 27 chrX 130461844 130465689 -46508451 - L1PA12 LINE L1 -1350 6234 2272 4858 26 0 2 chrX 130465689 130466259 -46507881 + L1PA4 LINE L1 5587 6155 0 4005 264 162 48 chrX 130466259 130468306 -46505834 - L1PA12 LINE L1 -5292 2289 10 301 222 79 16 chrX 130468646 130468659 -46505481 - L1MA9 LINE L1 0 6312 6300 2105 203 27 85 chrX 130468659 130469318 -46504822 - L1ME1 LINE L1 -19 6147 5527 2077 264 68 10 chrX 130469313 130469920 -46504220 - L1MEc LINE L1 -5606 790 149 * 2326 144 0 19 chrX 130469923 130470290 -46503850 + MLT1A1 LTR MaLR 6 365 0 305 271 52 0 chrX 130470293 130470389 -46503751 - L1MEc LINE L1 -6244 152 52 2169 124 0 3 chrX 130470967 130471265 -46502875 + AluSx SINE Alu 1 297 -15 810 306 97 29 chrX 130471338 130471720 -46502420 + MLT1J2 LTR MaLR 43 450 0 340 242 0 129 chrX 130471889 130472075 -46502065 + MLT1E2 LTR MaLR 13 174 -452 * 702 155 7 54 chrX 130472070 130472218 -46501922 + MLT1E2 LTR MaLR 486 626 0 459 265 0 66 chrX 130472234 130472415 -46501725 - HAL1b LINE L1 -800 548 380 2627 96 3 3 chrX 130473090 130473445 -46500695 + THE1A LTR MaLR 1 355 0 11830 89 5 2 chrX 130473445 130475020 -46499120 + THE1A-int LTR MaLR 1 1580 0 2448 117 3 17 chrX 130475020 130475380 -46498760 + THE1A LTR MaLR 1 355 0 2138 113 7 0 chrX 130475957 130476249 -46497891 - AluSx SINE Alu -18 294 1 182 33 67 0 chrX 130476937 130476967 -46497173 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 39932 60 1 0 chrX 130477718 130483847 -46490293 + L1PA5 LINE L1 11 6142 -12 2026 133 110 45 chrX 130483991 130484391 -46489749 + MSTA LTR MaLR 1 426 -2 4315 223 50 14 chrX 130485565 130486836 -46487304 + L1M4 LINE L1 3940 5255 -891 6444 107 36 5 chrX 130486967 130488133 -46486007 + L1MA2 LINE L1 5101 6303 -1 282 268 28 0 chrX 130488275 130488346 -46485794 - MIR SINE MIR -93 115 43 320 250 198 0 chrX 130489490 130489606 -46484534 - MIR3 SINE MIR -6 202 64 434 298 15 18 chrX 130489911 130490047 -46484093 + MIR SINE MIR 21 153 -67 356 211 14 0 chrX 130490087 130490158 -46483982 - MIR SINE MIR -8 254 183 1929 151 0 42 chrX 130490313 130490625 -46483515 + AluJo SINE Alu 1 299 -13 1383 97 48 9 chrX 130490977 130491204 -46482936 - L1MA2 LINE L1 0 6304 6069 542 125 11 0 chrX 130491304 130491392 -46482748 + L1 LINE L1 4102 4190 -1956 315 0 0 0 chrX 130491400 130491435 -46482705 + (TTG)n Simple_repeat Simple_repeat 2 36 0 429 218 0 0 chrX 130491438 130491516 -46482624 + L2 LINE L2 3195 3272 0 2355 93 0 0 chrX 130494440 130494740 -46479400 + AluSx SINE Alu 1 300 -12 358 277 77 8 chrX 130494918 130495048 -46479092 - MIR3 SINE MIR -7 201 63 1228 252 36 107 chrX 130495207 130495834 -46478306 - L2 LINE L2 -3 3310 2746 907 232 13 0 chrX 130495834 130496067 -46478073 + L1MA10 LINE L1 6085 6320 -14 1228 252 36 107 chrX 130496067 130496265 -46477875 - L2 LINE L2 -567 2746 2536 572 298 43 38 chrX 130496286 130496521 -46477619 - L2 LINE L2 -1 3312 3077 195 351 96 11 chrX 130498832 130498926 -46475214 - MIR SINE MIR -61 147 46 391 311 108 6 chrX 130498995 130499162 -46474978 - MIR SINE MIR -4 258 75 1311 237 41 24 chrX 130499258 130499671 -46474469 - L1ME1 LINE L1 -5 6161 5742 416 312 16 65 chrX 130499788 130499974 -46474166 - MIR3 SINE MIR -23 185 9 3943 36 11 0 chrX 130500285 130500762 -46473378 - L1PA3 LINE L1 0 6155 5674 239 302 63 0 chrX 130500859 130500922 -46473218 - L2 LINE L2 0 3272 3206 422 325 59 18 chrX 130501262 130501431 -46472709 + MIR3 SINE MIR 18 193 -15 325 215 37 19 chrX 130501468 130501575 -46472565 - L1MC4a LINE L1 -1878 5930 5822 231 308 188 8 chrX 130502086 130502203 -46471937 + MIR SINE MIR 2 139 -123 307 169 65 26 chrX 130502204 130502281 -46471859 - LTR33A LTR ERVL 0 523 444 242 296 8 32 chrX 130502500 130502625 -46471515 - MLT2E LTR ERVL -478 150 29 214 226 38 113 chrX 130502686 130502792 -46471348 + MIR SINE MIR 137 234 -28 396 345 20 20 chrX 130502904 130503052 -46471088 - L2 LINE L2 -3 3269 3122 300 267 89 88 chrX 130503133 130503329 -46470811 - MIR3 SINE MIR -59 203 13 920 213 62 31 chrX 130503382 130503631 -46470509 + MIR SINE MIR 9 262 0 289 327 63 39 chrX 130504168 130504373 -46469767 + MIR SINE MIR 3 212 -50 338 359 24 11 chrX 130505232 130505469 -46468671 - L2 LINE L2 -255 3017 2701 21 36 0 0 chrX 130505469 130505497 -46468643 + AT_rich Low_complexity Low_complexity 1 28 0 4447 86 14 2 chrX 130505497 130506136 -46468004 - L1MA1 LINE L1 -6 6296 5650 446 51 0 0 chrX 130506139 130506198 -46467942 + L1MA1 LINE L1 5587 5645 -659 200 309 57 57 chrX 130506199 130506322 -46467818 - L2 LINE L2 -604 2710 2588 394 248 26 0 chrX 130507222 130507335 -46466805 - L1MC4a LINE L1 -1927 5881 5766 930 297 73 20 chrX 130507941 130509028 -46465112 - L1MC4a LINE L1 -508 5662 4514 729 75 0 0 chrX 130509028 130509122 -46465018 + AluS SINE Alu 1 94 -219 483 48 0 0 chrX 130509125 130509187 -46464953 + (GA)n Simple_repeat Simple_repeat 2 63 0 213 121 0 0 chrX 130509187 130509220 -46464920 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 227 196 0 0 chrX 130509220 130509276 -46464864 - L1MC4a LINE L1 -1621 4525 4470 2470 216 70 13 chrX 130509377 130510048 -46464092 - L1ME1 LINE L1 -5 6161 5453 827 296 62 33 chrX 130510019 130510809 -46463331 - L1MC4a LINE L1 -1734 4412 3600 * 4067 140 20 4 chrX 130510805 130511491 -46462649 + L1PA16 LINE L1 5448 6144 -22 382 351 61 9 chrX 130511525 130511756 -46462384 - L1MC4a LINE L1 -2936 3210 2968 345 269 19 0 chrX 130512190 130512294 -46461846 - L2 LINE L2 -610 2704 2599 752 289 64 8 chrX 130513078 130513313 -46460827 + MIR SINE MIR 5 252 -10 502 335 31 16 chrX 130513763 130513957 -46460183 + MIR SINE MIR 36 232 -30 518 254 99 33 chrX 130515094 130515275 -46458865 + MIR SINE MIR 22 214 -48 780 279 27 9 chrX 130515507 130515729 -46458411 + MIR SINE MIR 1 226 -36 1944 38 4 0 chrX 130515988 130516224 -46457916 - L1PA5 LINE L1 -5 6149 5913 364 331 62 38 chrX 130516310 130516470 -46457670 + MIR SINE MIR 28 191 -71 528 362 14 5 chrX 130516871 130517089 -46457051 - MIR SINE MIR -3 259 40 233 268 144 10 chrX 130517203 130517300 -46456840 - MIR SINE MIR -71 191 82 822 306 65 12 chrX 130517303 130517627 -46456513 - L2 LINE L2 0 3313 2973 203 318 0 0 chrX 130517640 130517684 -46456456 - MIR SINE MIR -131 77 34 207 345 0 0 chrX 130518677 130518732 -46455408 - L2 LINE L2 -17 3296 3242 287 164 16 0 chrX 130518802 130518863 -46455277 + (CA)n Simple_repeat Simple_repeat 1 62 0 567 275 54 16 chrX 130520153 130520384 -46453756 - MIR SINE MIR -10 252 17 562 273 75 6 chrX 130520453 130520614 -46453526 - MER5B DNA MER1_type -1 177 6 187 224 61 0 chrX 130521016 130521065 -46453075 - L2 LINE L2 -1 3312 3261 242 359 51 13 chrX 130521066 130521222 -46452918 + MER20B DNA MER1_type 2 163 -620 372 342 79 18 chrX 130521591 130521819 -46452321 + MIR SINE MIR 7 248 -14 751 248 24 8 chrX 130521932 130522186 -46451954 + L1MC/D LINE L1 2707 2964 -3182 4684 138 7 51 chrX 130522180 130523075 -46451065 + L1MA10 LINE L1 5472 6326 -8 32 0 0 0 chrX 130523080 130523112 -46451028 + AT_rich Low_complexity Low_complexity 1 32 0 3545 218 30 26 chrX 130523150 130524817 -46449323 + L1MC/D LINE L1 4146 5812 -547 315 241 86 60 chrX 130525505 130525621 -46448519 + MIR SINE MIR 11 129 -133 255 358 127 34 chrX 130528187 130528957 -46445183 + L2 LINE L2 2040 2881 -433 207 289 217 0 chrX 130529039 130529122 -46445018 + L2 LINE L2 3197 3297 -16 338 267 92 42 chrX 130529206 130529326 -46444814 + MIR SINE MIR 48 173 -89 182 271 34 0 chrX 130529312 130529371 -46444769 - L3 LINE CR1 -308 1269 1209 * 637 340 98 13 chrX 130529749 130530067 -46444073 - L3 LINE CR1 -497 1080 736 335 116 130 0 chrX 130530211 130530280 -46443860 - L1MB4 LINE L1 0 6180 6103 319 266 138 0 chrX 130530286 130530395 -46443745 - L1MC4 LINE L1 -1 8041 7918 939 120 0 0 chrX 130530414 130530648 -46443492 + (TA)n Simple_repeat Simple_repeat 1 234 0 2210 127 0 0 chrX 130531084 130531391 -46442749 - AluSx SINE Alu 0 312 6 430 337 30 12 chrX 130531396 130531565 -46442575 + MER5B DNA MER1_type 7 178 0 748 342 123 20 chrX 130531672 130532070 -46442070 + L2 LINE L2 2834 3272 0 374 317 28 0 chrX 130532468 130532610 -46441530 - MIR SINE MIR -56 206 61 335 359 152 0 chrX 130532821 130533005 -46441135 - MIR SINE MIR -31 231 20 224 309 72 66 chrX 130533156 130533337 -46440803 - L2 LINE L2 -217 3055 2874 1017 314 22 19 chrX 130533914 130534452 -46439688 - L1MC/D LINE L1 -2005 6083 5544 187 114 45 0 chrX 130534921 130534965 -46439175 + (TA)n Simple_repeat Simple_repeat 1 46 0 829 161 56 6 chrX 130535166 130535346 -46438794 + MER53 DNA DNA 1 189 0 609 294 31 10 chrX 130535977 130536171 -46437969 + MIR SINE MIR 20 217 -45 415 229 107 30 chrX 130536906 130537037 -46437103 + MIR3 SINE MIR 35 175 -33 322 174 0 58 chrX 130537571 130537640 -46436500 + MIR3 SINE MIR 130 194 -14 563 258 108 5 chrX 130537872 130538058 -46436082 - MIR SINE MIR -40 222 18 284 253 13 0 chrX 130538228 130538303 -46435837 + L2 LINE L2 3234 3309 -4 1783 110 67 0 chrX 130540427 130540681 -46433459 + AluSx SINE Alu 38 308 -4 1581 168 7 0 chrX 130542257 130542554 -46431586 + L1MA8 LINE L1 5987 6285 -6 1074 206 0 9 chrX 130542750 130542969 -46431171 - L1MC3 LINE L1 -845 6940 6724 * 2972 191 22 25 chrX 130542960 130543728 -46430412 - L1MC/D LINE L1 -1053 5373 4608 269 218 39 39 chrX 130543782 130543860 -46430280 - L1MC/D LINE L1 -6348 78 1 427 305 38 16 chrX 130543921 130544115 -46430025 + L1M4 LINE L1 3667 3864 -2282 240 330 52 26 chrX 130544265 130544459 -46429681 + L1M4 LINE L1 4025 4223 -1923 4015 251 67 17 chrX 130544667 130544819 -46429321 + L1MC4 LINE L1 6458 6601 -1441 204 97 0 0 chrX 130544819 130544850 -46429290 + (CA)n Simple_repeat Simple_repeat 2 32 0 4015 251 67 17 chrX 130544850 130546056 -46428084 + L1MC4 LINE L1 6601 7884 -158 237 33 0 0 chrX 130546147 130546177 -46427963 + (TG)n Simple_repeat Simple_repeat 1 30 0 344 278 61 0 chrX 130546189 130546304 -46427836 + L1MC4 LINE L1 7919 8040 -2 953 162 66 51 chrX 130546514 130546711 -46427429 + AluJo SINE Alu 106 305 -7 1278 174 0 23 chrX 130546766 130546984 -46427156 - AluJo SINE Alu -16 296 84 24 0 0 0 chrX 130547251 130547275 -46426865 + AT_rich Low_complexity Low_complexity 1 24 0 365 279 69 33 chrX 130547466 130547799 -46426341 + L1M4 LINE L1 4797 5141 -1005 1484 274 87 8 chrX 130547823 130548319 -46425821 + L1ME4a LINE L1 26 560 -5980 2995 186 106 142 chrX 130548345 130549043 -46425097 + L1ME4a LINE L1 858 1579 -4961 549 241 9 0 chrX 130549043 130549159 -46424981 + FLAM_C SINE Alu 1 117 -26 2995 186 106 142 chrX 130549159 130549904 -46424236 + L1ME4a LINE L1 1579 2349 -4191 321 70 0 0 chrX 130549904 130549947 -46424193 - U2 snRNA snRNA -145 43 1 2995 186 106 142 chrX 130549947 130550161 -46423979 + L1ME4a LINE L1 2349 2569 -3971 1675 146 0 38 chrX 130550161 130550470 -46423670 - AluSx SINE Alu 0 329 31 2995 186 106 142 chrX 130550470 130550808 -46423332 + L1ME4a LINE L1 2569 2941 -3599 40788 34 21 2 chrX 130550825 130556860 -46417280 - L1PA3 LINE L1 0 6155 1 329 248 57 0 chrX 130556866 130556971 -46417169 + L1ME4a LINE L1 2932 3042 -3498 1574 238 67 26 chrX 130556988 130557568 -46416572 - L1MD2 LINE L1 -13 6346 5743 * 2020 214 36 4 chrX 130557564 130558126 -46416014 + L1ME4a LINE L1 3030 3609 -2931 334 256 22 16 chrX 130558172 130558329 -46415811 + L1ME4a LINE L1 5589 5749 -809 29 28 0 0 chrX 130558377 130558413 -46415727 + AT_rich Low_complexity Low_complexity 1 36 0 685 215 45 10 chrX 130558471 130558671 -46415469 + L1ME4a LINE L1 6008 6214 -1988 3487 187 29 14 chrX 130558985 130559722 -46414418 - L1MB7 LINE L1 0 6184 5437 271 194 0 65 chrX 130559726 130559819 -46414321 - L1MB7 LINE L1 -871 5275 5189 372 98 0 0 chrX 130560132 130560193 -46413947 - L1MB8 LINE L1 -3 6175 6115 2570 173 25 91 chrX 130560229 130560541 -46413599 - L1MB7 LINE L1 -49 6135 5891 2456 107 114 5 chrX 130560541 130560926 -46413214 + MSTA LTR MaLR 2 428 0 2570 173 25 91 chrX 130560926 130561297 -46412843 - L1MB7 LINE L1 -293 5891 5497 2239 92 0 3 chrX 130561303 130561606 -46412534 - AluY SINE Alu -9 302 1 233 326 22 22 chrX 130562471 130562560 -46411580 - MIR SINE MIR -57 205 117 535 260 113 31 chrX 130563977 130564133 -46410007 + L1ME4a LINE L1 6169 6311 -204 216 0 0 0 chrX 130564133 130564157 -46409983 + (CA)n Simple_repeat Simple_repeat 2 25 0 535 260 113 31 chrX 130564157 130564319 -46409821 + L1ME4a LINE L1 6311 6513 -2 842 297 4 11 chrX 130566229 130566492 -46407648 - MIR SINE MIR 0 262 2 2759 305 59 18 chrX 130566526 130567441 -46406699 + MER45C DNA AcHobo 1 953 0 365 329 20 34 chrX 130567682 130567831 -46406309 + MIR3 SINE MIR 11 157 -51 24 0 0 0 chrX 130567968 130567992 -46406148 + AT_rich Low_complexity Low_complexity 1 24 0 630 315 125 22 chrX 130568819 130569276 -46404864 - L2 LINE L2 -561 2753 2250 25 31 0 0 chrX 130570336 130570368 -46403772 + AT_rich Low_complexity Low_complexity 1 32 0 909 208 25 0 chrX 130572667 130572864 -46401276 + L1PA16 LINE L1 5964 6165 -1 460 328 57 16 chrX 130572917 130573109 -46401031 + MIR SINE MIR 19 218 -44 306 125 0 0 chrX 130573308 130573356 -46400784 + (CA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chrX 130573356 130573377 -46400763 + (GA)n Simple_repeat Simple_repeat 2 22 0 352 279 53 84 chrX 130573572 130573790 -46400350 + MIR3 SINE MIR 3 211 -51 23 0 0 0 chrX 130574151 130574174 -46399966 + AT_rich Low_complexity Low_complexity 1 23 0 560 257 11 20 chrX 130574667 130574823 -46399317 - MIR3 SINE MIR -41 167 11 514 288 0 65 chrX 130574912 130575065 -46399075 + MIR3 SINE MIR 66 208 0 518 268 116 0 chrX 130575329 130575493 -46398647 + MIR SINE MIR 71 253 -9 993 156 69 73 chrX 130575514 130575717 -46398423 + L1MB8 LINE L1 5905 6108 -70 2167 116 3 13 chrX 130575717 130576018 -46398122 - AluSx SINE Alu -14 298 1 993 156 69 73 chrX 130576018 130576089 -46398051 + L1MB8 LINE L1 6108 6178 0 623 315 100 38 chrX 130576209 130576821 -46397319 + L1M4 LINE L1 4407 5056 -1090 548 101 13 0 chrX 130577010 130577089 -46397051 - MADE1 DNA Mariner 0 80 1 325 363 38 62 chrX 130577489 130577778 -46396362 - L2 LINE L2 -18 3254 2973 268 321 121 18 chrX 130579217 130579382 -46394758 + MIR3 SINE MIR 19 200 -8 559 290 121 30 chrX 130579424 130579655 -46394485 + MIR SINE MIR 3 254 -8 411 229 112 12 chrX 130579796 130579921 -46394219 - MIR SINE MIR -63 145 33 274 359 71 46 chrX 130580244 130580525 -46393615 + L2 LINE L2 2435 2722 -592 21 36 0 0 chrX 130580681 130580709 -46393431 + AT_rich Low_complexity Low_complexity 1 28 0 469 249 86 66 chrX 130580714 130580911 -46393229 - L2 LINE L2 0 3313 3113 2108 273 131 20 chrX 130580960 130582194 -46391946 + HAL1 LINE L1 68 1437 -1070 1303 316 79 3 chrX 130582281 130582833 -46391307 + L2 LINE L2 2489 3075 -238 2488 194 4 4 chrX 130582843 130583297 -46390843 + L1M2 LINE L1 1 454 -6395 695 145 0 0 chrX 130583286 130583403 -46390737 + L1M1 LINE L1 4892 5008 -1138 * 1032 150 20 40 chrX 130583403 130583603 -46390537 - MSTB LTR MaLR 0 426 231 666 152 9 0 chrX 130583601 130583706 -46390434 - MSTB LTR MaLR -320 106 1 * 306 143 0 0 chrX 130583706 130583762 -46390378 + L1M1 LINE L1 5004 5059 -1087 1215 158 14 5 chrX 130583763 130583985 -46390155 + MER41B LTR ERV1 326 549 -86 2537 127 62 4 chrX 130583986 130584640 -46389500 + L1M1 LINE L1 5052 5740 -563 286 364 40 12 chrX 130584635 130584981 -46389159 + L1PA12 LINE L1 1725 2080 -5501 * 391 127 14 0 chrX 130585285 130585356 -46388784 + L1PA12 LINE L1 1698 1769 -5812 * 2700 163 21 98 chrX 130585351 130585543 -46388597 + L1MA4A LINE L1 5340 5545 -758 2012 131 13 3 chrX 130585543 130585841 -46388299 + AluSx SINE Alu 1 301 -11 2700 163 21 98 chrX 130585841 130586222 -46387918 + L1MA4A LINE L1 5545 5697 -606 2722 139 0 5 chrX 130586222 130586645 -46387495 + L1PA13 LINE L1 5729 6157 -6 2700 163 21 98 chrX 130586645 130587157 -46386983 + L1MA4A LINE L1 5697 6247 -56 1474 156 39 80 chrX 130587312 130587702 -46386438 - MLT1A2 LTR MaLR 0 374 1 575 265 33 0 chrX 130589954 130590105 -46384035 - MIR3 SINE MIR -1 207 52 251 301 142 68 chrX 130590957 130591176 -46382964 + L2 LINE L2 2826 3060 -212 600 383 54 16 chrX 130591225 130591598 -46382542 - L2 LINE L2 0 3272 2886 5018 87 16 0 chrX 130591672 130592365 -46381775 + L1PA11 LINE L1 5470 6173 -1 1476 315 113 42 chrX 130592414 130593543 -46380597 - L2 LINE L2 -669 2645 1437 654 238 6 31 chrX 130593714 130593874 -46380266 + MIR SINE MIR 87 242 -20 2230 101 24 0 chrX 130593888 130594185 -46379955 - AluSq SINE Alu -9 304 1 238 250 0 0 chrX 130595511 130595555 -46378585 + MIR SINE MIR 51 94 -168 848 291 8 24 chrX 130595661 130595912 -46378228 + MIR SINE MIR 2 248 -14 284 308 101 31 chrX 130595935 130596094 -46378046 + L2 LINE L2 1832 2001 -1313 2355 93 0 0 chrX 130597527 130597827 -46376313 + AluSx SINE Alu 1 300 -12 358 277 77 8 chrX 130598005 130598135 -46376005 - MIR3 SINE MIR -7 201 63 1228 252 36 107 chrX 130598294 130598921 -46375219 - L2 LINE L2 -3 3310 2746 907 232 13 0 chrX 130598921 130599154 -46374986 + L1MA10 LINE L1 6085 6320 -14 1228 252 36 107 chrX 130599154 130599352 -46374788 - L2 LINE L2 -567 2746 2536 558 298 43 38 chrX 130599373 130599608 -46374532 - L2 LINE L2 -1 3312 3077 195 351 96 11 chrX 130601919 130602013 -46372127 - MIR SINE MIR -61 147 46 391 311 108 6 chrX 130602082 130602249 -46371891 - MIR SINE MIR -4 258 75 1311 237 41 24 chrX 130602345 130602758 -46371382 - L1ME1 LINE L1 -5 6161 5742 416 312 16 65 chrX 130602875 130603061 -46371079 - MIR3 SINE MIR -23 185 9 3943 36 11 0 chrX 130603372 130603849 -46370291 - L1PA3 LINE L1 0 6155 5674 239 302 63 0 chrX 130603946 130604009 -46370131 - L2 LINE L2 0 3272 3206 422 325 59 18 chrX 130604349 130604518 -46369622 + MIR3 SINE MIR 18 193 -15 325 215 37 19 chrX 130604555 130604662 -46369478 - L1MC4a LINE L1 -1878 5930 5822 231 308 188 8 chrX 130605173 130605290 -46368850 + MIR SINE MIR 2 139 -123 307 169 65 26 chrX 130605291 130605368 -46368772 - LTR33A LTR ERVL 0 523 444 242 296 8 32 chrX 130605587 130605712 -46368428 - MLT2E LTR ERVL -478 150 29 214 226 38 113 chrX 130605773 130605879 -46368261 + MIR SINE MIR 137 234 -28 396 345 20 20 chrX 130605991 130606139 -46368001 - L2 LINE L2 -3 3269 3122 300 267 89 88 chrX 130606220 130606416 -46367724 - MIR3 SINE MIR -59 203 13 920 213 62 31 chrX 130606469 130606718 -46367422 + MIR SINE MIR 9 262 0 471 306 68 27 chrX 130606895 130607121 -46367019 + MIR SINE MIR 7 241 -21 484 335 90 51 chrX 130607142 130607977 -46366163 + L2 LINE L2 2450 3306 -7 344 197 133 5 chrX 130607989 130608169 -46365971 - MER5C DNA MER1_type -1 323 31 2332 91 0 6 chrX 130608643 130608973 -46365167 - L1PA8 LINE L1 0 6172 5845 32615 44 1 3 chrX 130609006 130613222 -46360918 + L1PA3 LINE L1 7 4216 -1930 7596 29 5 0 chrX 130613222 130614508 -46359632 + L1PA3 LINE L1 4866 6155 0 341 322 33 8 chrX 130615181 130615302 -46358838 - L2 LINE L2 0 3313 3190 572 298 60 0 chrX 130615448 130615616 -46358524 - MIR SINE MIR -83 179 2 2220 94 0 45 chrX 130616963 130617271 -46356869 + AluSx SINE Alu 1 294 -18 1080 308 93 68 chrX 130617549 130617834 -46356306 - L2 LINE L2 -4 3268 2992 1737 75 75 26 chrX 130617834 130618099 -46356041 + L1PA8 LINE L1 5891 6168 -4 1080 308 93 68 chrX 130618099 130618628 -46355512 - L2 LINE L2 -280 2992 2471 254 139 0 23 chrX 130618783 130618826 -46355314 - MIR3 SINE MIR -52 156 115 180 329 73 44 chrX 130618871 130619008 -46355132 + L2 LINE L2 3173 3313 0 556 68 0 0 chrX 130619953 130620027 -46354113 - L1PA7 LINE L1 -7 6147 6074 22 0 0 0 chrX 130620380 130620402 -46353738 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 130620447 130620477 -46353663 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chrX 130620872 130620904 -46353236 + AT_rich Low_complexity Low_complexity 1 32 0 542 314 43 19 chrX 130620974 130621184 -46352956 + MIR SINE MIR 32 246 -16 23 33 0 0 chrX 130622606 130622636 -46351504 + AT_rich Low_complexity Low_complexity 1 30 0 443 259 71 29 chrX 130622965 130623135 -46351005 + MIR SINE MIR 86 262 0 3752 170 37 1 chrX 130623154 130623896 -46350244 - L1MA5 LINE L1 -2 6298 5528 539 318 65 61 chrX 130624078 130624556 -46349584 - L2 LINE L2 -1 3312 2833 495 314 168 8 chrX 130624662 130625072 -46349068 - L2 LINE L2 -26 3287 2783 206 244 0 0 chrX 130625075 130625116 -46349024 - L2 LINE L2 -501 2813 2773 519 160 0 19 chrX 130625128 130625234 -46348906 - L1MB7 LINE L1 -5 6179 6076 5256 213 26 11 chrX 130625354 130626857 -46347283 - L1MB7 LINE L1 -644 5540 4013 6006 258 32 22 chrX 130626878 130629592 -46344548 - L1M4c LINE L1 -3925 2900 14 2753 279 42 14 chrX 130629605 130630444 -46343696 - L2 LINE L2 -528 2786 1925 866 280 41 44 chrX 130630709 130630791 -46343349 + L1ME LINE L1 13 94 -5976 6608 130 56 19 chrX 130630791 130631978 -46342162 + Tigger3b DNA MER2_type 1 1231 0 866 280 41 44 chrX 130631978 130632284 -46341856 + L1ME LINE L1 94 400 -5670 1888 154 0 7 chrX 130632437 130632723 -46341417 - AluJo SINE Alu -28 284 1 417 251 110 37 chrX 130632913 130633323 -46340817 + L1ME LINE L1 556 995 -5075 1329 251 56 13 chrX 130633377 130633899 -46340241 + L1ME LINE L1 2663 3206 -2874 2201 285 52 11 chrX 130633899 130634651 -46339489 + L1ME2 LINE L1 3 785 -5285 552 161 0 0 chrX 130634655 130634736 -46339404 + Tigger3(Golem) DNA MER2_type 1 81 -2948 658 162 36 0 chrX 130634746 130634857 -46339283 + Tigger3(Golem) DNA MER2_type 2914 3028 -1 279 216 30 45 chrX 130634865 130634999 -46339141 + L1ME2 LINE L1 795 926 -5144 * 42147 32 27 10 chrX 130634995 130640904 -46333236 + L1PA3 LINE L1 4 6014 -141 683 102 51 8 chrX 130641022 130641140 -46333000 + MER51A-int LTR ERV1 2467 2589 -5227 * 1995 95 82 0 chrX 130641133 130641450 -46332690 + MER51A-int LTR ERV1 2923 3265 -4551 2750 123 89 18 chrX 130641468 130641602 -46332538 + MER51A-int LTR ERV1 1660 1783 -4480 2352 85 0 0 chrX 130641602 130641896 -46332244 + AluSq SINE Alu 6 299 -14 2750 123 89 18 chrX 130641896 130642428 -46331712 + MER51A-int LTR ERV1 1783 3693 -2570 800 103 0 0 chrX 130642425 130642532 -46331608 + MER51A-int LTR ERV1 2340 2446 -2771 * 3292 115 43 15 chrX 130642541 130643073 -46331067 + LTR10A LTR ERV1 1 547 -62 1186 106 11 0 chrX 130643087 130643266 -46330874 + MER51A-int LTR ERV1 2465 2645 -2572 255 158 232 0 chrX 130643265 130643347 -46330793 + MER51A-int LTR ERV1 5249 5349 -2188 * 8144 155 67 44 chrX 130643343 130644384 -46329756 + MER51A-int LTR ERV1 5625 6641 -1175 2471 72 0 3 chrX 130644384 130644690 -46329450 + AluY SINE Alu 1 305 -6 8144 155 67 44 chrX 130644690 130645152 -46328988 + MER51A-int LTR ERV1 6641 7091 -725 216 0 0 0 chrX 130645152 130645176 -46328964 + (CAAAC)n Simple_repeat Simple_repeat 1 24 0 8144 155 67 44 chrX 130645176 130645585 -46328555 + MER51A-int LTR ERV1 7091 7815 -1 897 85 0 0 chrX 130645587 130645705 -46328435 + MER51A LTR ERV1 1 118 -516 1144 8 8 0 chrX 130645838 130645971 -46328169 + L1PA2 LINE L1 6020 6153 -2 890 316 39 47 chrX 130645971 130646836 -46327304 + L1ME2 LINE L1 952 1809 -4452 934 224 70 0 chrX 130646836 130647037 -46327103 - MER58C DNA MER1_type 0 215 1 1078 238 80 7 chrX 130647040 130647521 -46326619 + L1ME2 LINE L1 4863 5370 -728 1214 177 0 5 chrX 130647533 130647748 -46326392 - AluJo SINE Alu -14 298 85 371 172 64 3 chrX 130647752 130647846 -46326294 + L1MD3 LINE L1 7907 7994 -1 2365 248 61 16 chrX 130647854 130648544 -46325596 + L1ME2 LINE L1 5377 6097 -1 544 303 152 22 chrX 130649338 130649569 -46324571 - MIR SINE MIR 0 262 2 218 300 11 56 chrX 130650533 130650623 -46323517 - L3 LINE CR1 -3 1574 1489 643 301 136 0 chrX 130650662 130650875 -46323265 - MIR SINE MIR -18 244 3 972 185 0 0 chrX 130651227 130651384 -46322756 + FRAM SINE Alu 1 156 -20 2363 58 0 7 chrX 130651547 130651842 -46322298 + AluY SINE Alu 1 293 -18 220 293 181 53 chrX 130651958 130652091 -46322049 - L2 LINE L2 -16 3256 3107 340 331 116 0 chrX 130652973 130653094 -46321046 - L2 LINE L2 -5 3267 3133 622 219 0 0 chrX 130653360 130653474 -46320666 - MER81 DNA DNA 0 114 1 255 342 126 60 chrX 130653556 130654240 -46319900 - L2 LINE L2 -466 2848 2120 829 274 57 27 chrX 130654273 130654569 -46319571 + MLT1I LTR MaLR 100 404 -5 362 326 89 48 chrX 130655191 130655482 -46318658 - L3 LINE CR1 0 1577 1275 2139 117 0 0 chrX 130657691 130658002 -46316138 - AluSg SINE Alu 0 311 1 645 276 11 0 chrX 130658975 130659149 -46314991 + L1MC4 LINE L1 5689 5864 -1944 1220 76 6 0 chrX 130659345 130659517 -46314623 - L1MA4A LINE L1 0 6303 6131 2701 110 0 3 chrX 130659695 130660060 -46314080 - THE1B LTR MaLR 0 364 1 1105 206 62 47 chrX 130660425 130660764 -46313376 + MLT1A2 LTR MaLR 18 361 -13 3090 127 23 11 chrX 130660834 130661354 -46312786 - L1MA9 LINE L1 -5 6307 5782 262 203 127 0 chrX 130661357 130661436 -46312704 + L1MC4 LINE L1 6614 6702 -1340 3063 157 11 0 chrX 130661464 130662056 -46312084 - L1MA9 LINE L1 -530 5782 5185 5255 124 7 9 chrX 130662064 130662572 -46311568 - L1PA16 LINE L1 0 6166 5659 1915 136 64 25 chrX 130662572 130662933 -46311207 - THE1C LTR MaLR 0 375 1 5255 124 7 9 chrX 130662933 130663910 -46310230 - L1PA16 LINE L1 -507 5659 4726 311 171 88 19 chrX 130663913 130663954 -46310186 - L1MA9 LINE L1 -1465 4681 4644 2375 102 0 0 chrX 130663954 130664259 -46309881 - AluSg SINE Alu -5 305 1 311 171 88 19 chrX 130664259 130664523 -46309617 - L1MA9 LINE L1 -1502 4644 4307 * 1350 172 10 45 chrX 130664514 130664805 -46309335 + L1 LINE L1 3919 4199 -1947 242 163 0 0 chrX 130664806 130664849 -46309291 + Alu SINE Alu 246 288 -14 34 0 0 0 chrX 130664849 130664883 -46309257 + AT_rich Low_complexity Low_complexity 1 34 0 515 202 109 0 chrX 130664908 130665027 -46309113 + L1 LINE L1 4182 4313 -1833 2356 64 3 0 chrX 130665040 130665346 -46308794 - AluY SINE Alu 0 307 1 2457 154 10 112 chrX 130665351 130665721 -46308419 - L1MA10 LINE L1 -10 6324 6038 2020 149 7 0 chrX 130665721 130666030 -46308110 + AluSx SINE Alu 1 311 -1 2457 154 10 112 chrX 130666030 130666264 -46307876 - L1MA10 LINE L1 -296 6038 5782 452 192 10 0 chrX 130666264 130666363 -46307777 + (TA)n Simple_repeat Simple_repeat 1 100 0 1649 72 0 48 chrX 130666445 130666694 -46307446 - L1PA8 LINE L1 0 6172 5936 2440 147 12 12 chrX 130666698 130667106 -46307034 - L1MA10 LINE L1 -548 5786 5379 2380 216 7 27 chrX 130667115 130667713 -46306427 + L1MA10 LINE L1 4772 5357 -789 770 278 45 91 chrX 130667956 130668492 -46305648 + MLT1J LTR MaLR 1 511 0 567 336 100 39 chrX 130668816 130669426 -46304714 + L2 LINE L2 2191 2837 -477 187 368 11 21 chrX 130670980 130671075 -46303065 - MIR SINE MIR -75 133 40 * 306 360 50 6 chrX 130671073 130671234 -46302906 + MIR3 SINE MIR 7 174 -34 369 346 97 18 chrX 130671469 130671686 -46302454 - L2 LINE L2 -1 3271 3038 856 250 48 14 chrX 130674332 130674540 -46299600 + MER58A DNA MER1_type 7 221 -3 599 242 24 0 chrX 130674757 130674881 -46299259 + MER58A DNA MER1_type 3 129 0 984 307 43 22 chrX 130675171 130675539 -46298601 + L3 LINE CR1 530 905 -672 294 294 12 0 chrX 130675794 130675879 -46298261 + MER81 DNA DNA 29 114 0 1148 289 91 19 chrX 130675879 130676298 -46297842 + L2 LINE L2 2865 3313 0 302 273 182 53 chrX 130679024 130679211 -46294929 - MIR SINE MIR -31 231 21 25 0 0 0 chrX 130679831 130679856 -46294284 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chrX 130681768 130681801 -46292339 + AT_rich Low_complexity Low_complexity 1 33 0 898 255 17 30 chrX 130682644 130682875 -46291265 + MIR SINE MIR 35 262 0 432 356 139 39 chrX 130683615 130684068 -46290072 - L2 LINE L2 -3 3269 2738 668 207 116 35 chrX 130684068 130684266 -46289874 + MER58C DNA MER1_type 2 215 0 432 356 139 39 chrX 130684266 130684473 -46289667 - L2 LINE L2 -534 2738 2553 274 342 138 20 chrX 130685086 130685282 -46288858 - MIR SINE MIR -36 226 8 599 369 95 17 chrX 130686902 130687522 -46286618 - L2 LINE L2 -841 2473 1778 2828 3 0 0 chrX 130687522 130687826 -46286314 - AluYa5 SINE Alu -7 304 1 599 369 95 17 chrX 130687826 130687985 -46286155 - L2 LINE L2 -1536 1778 1633 258 32 0 0 chrX 130688040 130688071 -46286069 + (GGGAA)n Simple_repeat Simple_repeat 5 35 0 226 373 88 38 chrX 130688726 130689203 -46284937 - L2 LINE L2 -1623 1691 1191 363 292 77 80 chrX 130689446 130689720 -46284420 - L2 LINE L2 -556 2758 2486 565 253 120 54 chrX 130689851 130690092 -46284048 + MIR SINE MIR 1 257 -5 2222 108 3 0 chrX 130690854 130691142 -46282998 + AluSp SINE Alu 1 289 -24 35 0 0 0 chrX 130691142 130691177 -46282963 + AT_rich Low_complexity Low_complexity 1 35 0 321 287 31 87 chrX 130693353 130693607 -46280533 - L2 LINE L2 -213 3059 2820 275 324 63 27 chrX 130693693 130693804 -46280336 + L2 LINE L2 3199 3313 0 461 311 91 22 chrX 130693839 130694202 -46279938 - L2 LINE L2 -557 2757 2370 351 313 104 22 chrX 130694248 130694430 -46279710 - L2 LINE L2 -913 2401 2205 1899 130 67 0 chrX 130694456 130694741 -46279399 - AluSg SINE Alu -6 304 1 2433 89 8 14 chrX 130695822 130696182 -46277958 + L1PA16 LINE L1 5809 6166 0 470 293 20 56 chrX 130696593 130696897 -46277243 - L1ME2 LINE L1 -21 6143 5851 454 200 0 0 chrX 130696905 130697005 -46277135 - L1ME2 LINE L1 -722 5452 5353 2425 84 0 0 chrX 130697202 130697499 -46276641 - AluSq SINE Alu -16 297 1 4313 66 2 4 chrX 130698160 130698717 -46275423 - L1PA7 LINE L1 -1 6153 5598 2200 95 25 0 chrX 130698717 130699001 -46275139 - AluSc SINE Alu -18 291 1 3855 64 0 3 chrX 130699001 130699642 -46274498 - L1P3 LINE L1 -663 5491 4852 206 234 21 0 chrX 130699915 130699962 -46274178 - L2 LINE L2 -4 3309 3262 3945 210 41 61 chrX 130700866 130703217 -46270923 + L1MD1 LINE L1 3948 6241 -1 397 217 43 14 chrX 130703231 130703369 -46270771 + L1 LINE L1 3213 3354 -2792 1439 205 95 21 chrX 130703369 130703706 -46270434 - MLT1A1 LTR MaLR 0 365 4 1949 219 2 21 chrX 130703709 130704133 -46270007 - MLT1A1-int LTR MaLR 0 1735 1320 401 212 30 10 chrX 130704267 130704366 -46269774 - MLT1A1-int LTR MaLR -955 780 680 294 227 0 15 chrX 130704430 130704496 -46269644 - MLT1A1-int LTR MaLR -488 883 819 3255 204 9 13 chrX 130704526 130705218 -46268922 - MLT1A1-int LTR MaLR -1046 689 1 1157 214 31 31 chrX 130705218 130705508 -46268632 - MLT1A1 LTR MaLR 0 365 76 370 316 74 19 chrX 130705517 130705732 -46268408 + L1 LINE L1 3574 3800 -2346 715 328 74 3 chrX 130705737 130706063 -46268077 - HERV16 LTR ERVL -4584 412 64 1973 136 0 0 chrX 130706176 130706456 -46267684 + AluSx SINE Alu 1 280 -32 330 26 0 0 chrX 130706456 130706495 -46267645 + (GGAGAA)n Simple_repeat Simple_repeat 5 43 0 411 279 39 108 chrX 130706500 130706807 -46267333 - LTR16A LTR ERVL -169 285 2 441 54 0 0 chrX 130706814 130706870 -46267270 + (CA)n Simple_repeat Simple_repeat 2 57 0 196 209 14 43 chrX 130706872 130707011 -46267129 + (TA)n Simple_repeat Simple_repeat 2 136 0 423 269 6 56 chrX 130707697 130707857 -46266283 + MIR SINE MIR 56 207 -55 195 129 0 0 chrX 130708077 130708108 -46266032 + (GGA)n Simple_repeat Simple_repeat 2 32 0 5645 138 18 21 chrX 130709635 130710818 -46263322 - L1PA13 LINE L1 0 6163 4992 2072 142 0 9 chrX 130710818 130711134 -46263006 - AluSq SINE Alu 0 313 1 5645 138 18 21 chrX 130711134 130711435 -46262705 - L1PA13 LINE L1 -1171 4992 4692 402 21 0 0 chrX 130711597 130711644 -46262496 + (TC)n Simple_repeat Simple_repeat 2 48 0 3493 92 23 13 chrX 130712947 130713478 -46260662 - L1MA2 LINE L1 0 6304 5769 21 36 0 0 chrX 130713501 130713529 -46260611 + AT_rich Low_complexity Low_complexity 1 28 0 1875 138 28 3 chrX 130713732 130714023 -46260117 - AluJo SINE Alu -14 298 1 551 107 0 0 chrX 130714033 130714108 -46260032 - AluSg/x SINE Alu -21 291 217 6974 155 10 3 chrX 130714108 130715889 -46258251 - L1MA2 LINE L1 -520 5784 3993 537 344 102 32 chrX 130716138 130716510 -46257630 - LTR33 LTR ERVL -2 519 122 231 273 0 0 chrX 130716511 130716566 -46257574 + L1 LINE L1 2582 2636 -3510 918 210 113 59 chrX 130716567 130716909 -46257231 + MLT1A1 LTR MaLR 1 365 0 269 267 0 0 chrX 130716928 130717014 -46257126 + L1M1 LINE L1 3299 3384 -4181 350 276 16 16 chrX 130717017 130717202 -46256938 + L1M1 LINE L1 3351 3535 -4030 13592 142 15 101 chrX 130717206 130720421 -46253719 + L1P LINE L1 12 2949 -3197 291 114 0 0 chrX 130720473 130720517 -46253623 + (CA)n Simple_repeat Simple_repeat 2 45 0 1924 144 10 3 chrX 130720519 130720810 -46253330 - AluSx SINE Alu -19 293 1 260 135 162 81 chrX 130721750 130721861 -46252279 - L1MC4 LINE L1 -1 8041 7922 223 292 0 0 chrX 130721863 130721911 -46252229 + polypyrimidine Low_complexity Low_complexity 4 51 0 782 219 8 33 chrX 130721918 130722160 -46251980 - L1MC4 LINE L1 -130 7912 7677 1309 330 71 47 chrX 130722553 130723030 -46251110 + ERVL LTR ERVL 1492 1956 -3808 1491 139 6 154 chrX 130723030 130723374 -46250766 - AluJb SINE Alu -19 293 1 1309 330 71 47 chrX 130723374 130724064 -46250076 + ERVL LTR ERVL 1956 2687 -3077 687 59 0 0 chrX 130724551 130724636 -46249504 + AluSc SINE Alu 159 243 -66 316 97 0 97 chrX 130724673 130724735 -46249405 + Alu SINE Alu 228 283 -18 185 62 0 31 chrX 130724735 130724767 -46249373 + (TATAA)n Simple_repeat Simple_repeat 4 34 0 660 314 55 12 chrX 130724806 130725227 -46248913 + ERVL LTR ERVL 4201 4602 -1052 43879 32 21 2 chrX 130725227 130731259 -46242881 + L1PA2 LINE L1 1 6152 -3 2251 111 0 0 chrX 130731668 130731965 -46242175 + AluSx SINE Alu 1 297 -15 2120 83 72 0 chrX 130732374 130732652 -46241488 + AluSp SINE Alu 1 298 -15 1997 43 0 8 chrX 130732695 130732930 -46241210 + L1PA8 LINE L1 5939 6171 -1 2093 98 3 33 chrX 130734073 130734378 -46239762 + AluSq SINE Alu 1 296 -17 22 0 0 0 chrX 130734446 130734468 -46239672 + AT_rich Low_complexity Low_complexity 1 22 0 598 272 0 25 chrX 130734468 130734626 -46239514 - MIR SINE MIR -4 258 105 1441 180 130 88 chrX 130734647 130735047 -46239093 - MER47B DNA MER2_type 0 418 2 281 372 80 0 chrX 130735175 130735312 -46238828 + L2 LINE L2 3122 3269 -3 215 241 172 23 chrX 130736082 130736169 -46237971 - L2 LINE L2 -14 3258 3159 196 373 45 0 chrX 130736143 130736253 -46237887 + L2 LINE L2 3199 3313 0 * 1992 112 3 20 chrX 130736465 130736788 -46237352 - AluSx SINE Alu 0 312 1 1831 183 14 33 chrX 130737632 130737999 -46236141 + L1MB7 LINE L1 5806 6165 -19 766 258 0 16 chrX 130738551 130738741 -46235399 - MIR SINE MIR -3 259 73 207 0 0 0 chrX 130739257 130739280 -46234860 + (GGGGA)n Simple_repeat Simple_repeat 5 27 0 2180 103 0 17 chrX 130740717 130741017 -46233123 - AluSx SINE Alu -17 295 1 733 268 91 5 chrX 130741900 130742098 -46232042 - MER58C DNA MER1_type 0 215 1 239 333 19 0 chrX 130742221 130742326 -46231814 - L1P LINE L1 -1155 4991 4885 1083 294 31 44 chrX 130742372 130742917 -46231223 + L1MEc LINE L1 1510 2047 -4349 740 125 0 0 chrX 130742917 130743021 -46231119 - AluSc SINE Alu -204 105 2 1157 100 17 6 chrX 130743021 130743199 -46230941 + MLT2A2 LTR ERVL 293 451 -2 617 236 14 7 chrX 130743199 130743339 -46230801 - L1ME LINE L1 -382 5853 5713 1433 207 8 97 chrX 130743354 130743735 -46230405 + MLT1A1 LTR MaLR 19 365 0 1079 252 21 33 chrX 130743735 130743801 -46230339 - L1ME LINE L1 -519 5716 5651 1827 104 14 74 chrX 130743801 130744098 -46230042 + AluSq SINE Alu 15 293 -20 675 37 0 0 chrX 130744098 130744180 -46229960 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 729 102 0 0 chrX 130744181 130744289 -46229851 + (GA)n Simple_repeat Simple_repeat 1 108 0 1079 252 21 33 chrX 130744289 130744552 -46229588 - L1ME LINE L1 -582 5653 5388 1459 213 61 9 chrX 130744552 130744881 -46229259 + MLT1A1 LTR MaLR 1 346 -19 2540 237 73 36 chrX 130744896 130745173 -46228967 - L1ME LINE L1 -839 5376 5111 2398 84 7 0 chrX 130745173 130745470 -46228670 + AluSx SINE Alu 1 299 -13 2540 237 73 36 chrX 130745470 130746043 -46228097 - L1ME LINE L1 -1104 5111 4495 1106 131 11 11 chrX 130746043 130746219 -46227921 - AluSg/x SINE Alu -15 297 122 6068 247 41 56 chrX 130746222 130747166 -46226974 - L1MEc LINE L1 -1728 4487 3530 2025 116 0 46 chrX 130747166 130747495 -46226645 - AluSq SINE Alu 0 315 1 6068 247 41 56 chrX 130747495 130747720 -46226420 - L1MEc LINE L1 -2685 3530 3303 1456 187 4 0 chrX 130747720 130747961 -46226179 - AluJo SINE Alu -36 276 35 6068 247 41 56 chrX 130747961 130747998 -46226142 - L1MEc LINE L1 -2912 3303 3267 2204 117 0 0 chrX 130747998 130748296 -46225844 + AluSx SINE Alu 1 298 -14 6068 247 41 56 chrX 130748296 130748970 -46225170 - L1MEc LINE L1 -2948 3267 2584 2202 127 0 0 chrX 130748970 130749269 -46224871 - AluSx SINE Alu -12 300 2 6068 247 41 56 chrX 130749269 130750326 -46223814 - L1MEc LINE L1 -3631 2584 1642 1988 105 112 133 chrX 130750384 130750821 -46223319 - MSTA LTR MaLR 0 428 1 3472 149 150 89 chrX 130751008 130751813 -46222327 - MER4D LTR ERV1 -8 895 9 2110 120 7 13 chrX 130751835 130751971 -46222169 + AluSx SINE Alu 1 136 -176 2304 107 0 3 chrX 130751971 130752270 -46221870 + AluSg SINE Alu 1 298 -12 2110 120 7 13 chrX 130752270 130752433 -46221707 + AluSx SINE Alu 136 298 -14 1412 194 35 10 chrX 130752433 130752721 -46221419 - MER4D-int LTR ERV1 -21 6737 6443 1111 168 0 0 chrX 130752787 130752960 -46221180 - MER4E LTR ERV1 -5 774 602 298 125 54 0 chrX 130752960 130753016 -46221124 - MER4D-int LTR ERV1 -327 6431 6373 1795 214 47 30 chrX 130753084 130753491 -46220649 - MER4D-int LTR ERV1 -413 6345 5932 485 155 0 0 chrX 130753747 130753818 -46220322 - MER4D-int LTR ERV1 -4167 3953 3883 432 142 9 132 chrX 130753856 130753962 -46220178 - MER4D-int LTR ERV1 -4252 3868 3776 5368 160 75 73 chrX 130754122 130756517 -46217623 - MER4D-int LTR ERV1 -2129 4021 685 2106 172 27 8 chrX 130756514 130756886 -46217254 - MER4D-int LTR ERV1 -6374 384 6 * 4566 157 42 50 chrX 130756890 130757601 -46216539 - MER4D LTR ERV1 0 903 199 1922 168 7 0 chrX 130757601 130757911 -46216229 - AluSx SINE Alu 0 312 1 4566 157 42 50 chrX 130757911 130758104 -46216036 - MER4D LTR ERV1 -704 199 6 5689 64 4 9 chrX 130758151 130758842 -46215298 - L1PA7 LINE L1 -2 6152 5465 1255 249 20 0 chrX 130758876 130759177 -46214963 + MLT1A1 LTR MaLR 47 353 -12 720 225 0 0 chrX 130759190 130759341 -46214799 + MLT1A1-int LTR MaLR 2 152 -1583 2307 99 0 19 chrX 130759581 130759894 -46214246 + AluSg SINE Alu 1 307 -3 1558 208 0 3 chrX 130760075 130760363 -46213777 + AluJo SINE Alu 1 287 -25 26 0 0 0 chrX 130760698 130760724 -46213416 + AT_rich Low_complexity Low_complexity 1 26 0 754 190 0 0 chrX 130760724 130760845 -46213295 - FLAM_C SINE Alu -12 121 1 1201 185 18 13 chrX 130760954 130761181 -46212959 - L1MB5 LINE L1 0 6174 5947 2236 100 3 3 chrX 130761258 130761559 -46212581 - AluSg SINE Alu -9 301 1 3603 248 21 67 chrX 130761583 130761947 -46212193 - L1M4 LINE L1 -830 5316 4937 369 42 0 0 chrX 130761947 130761995 -46212145 - AluY SINE Alu 0 301 254 2269 74 3 19 chrX 130762004 130762313 -46211827 - AluY SINE Alu -7 304 1 3603 248 21 67 chrX 130762313 130763322 -46210818 - L1M4 LINE L1 -1217 4929 3952 2062 227 110 48 chrX 130763473 130764164 -46209976 + MER50 LTR ERV1 1 734 0 1873 153 3 0 chrX 130764313 130764613 -46209527 + AluSx SINE Alu 1 301 -11 1887 95 36 0 chrX 130766070 130766322 -46207818 - AluSx SINE Alu -17 295 35 216 111 0 0 chrX 130767177 130767213 -46206927 + (TG)n Simple_repeat Simple_repeat 2 37 0 3332 49 316 78 chrX 130767374 130767864 -46206276 + MER11C LTR ERVK 630 1071 0 1708 129 29 74 chrX 130767875 130768036 -46206104 - AluSx SINE Alu -15 297 155 2121 109 3 20 chrX 130768036 130768340 -46205800 - AluSc SINE Alu 0 309 11 1708 129 29 74 chrX 130768340 130768489 -46205651 - AluSx SINE Alu -157 155 1 2506 70 0 0 chrX 130768842 130769141 -46204999 + AluY SINE Alu 3 301 -10 2219 62 0 81 chrX 130771395 130771717 -46202423 - AluY SINE Alu -15 296 1 234 254 0 30 chrX 130771937 130772004 -46202136 - L1MB5 LINE L1 -220 5901 5837 214 191 0 0 chrX 130772482 130772524 -46201616 + (TA)n Simple_repeat Simple_repeat 2 43 0 1411 189 0 74 chrX 130772867 130773179 -46200961 + AluJo SINE Alu 1 289 -23 540 186 224 12 chrX 130773564 130773725 -46200415 - L1MB7 LINE L1 -151 6033 5839 3350 211 71 12 chrX 130773797 130774612 -46199528 - L1MB5 LINE L1 0 6174 5312 * 5244 181 33 13 chrX 130774608 130775814 -46198326 - L1MA4 LINE L1 -11 6471 5198 1811 213 36 50 chrX 130775813 130776167 -46197973 - L1MA4 LINE L1 -3380 2948 2590 * 204 0 83 0 chrX 130776167 130776203 -46197937 + T-rich Low_complexity Low_complexity 2 40 0 2114 70 7 0 chrX 130776205 130776478 -46197662 - AluY SINE Alu -36 275 1 1811 213 36 50 chrX 130776478 130776595 -46197545 - L1MA4 LINE L1 -3739 2589 2481 878 264 29 119 chrX 130776591 130776912 -46197228 - L1MA4 LINE L1 -4812 516 264 * 2207 103 0 0 chrX 130776912 130777194 -46196946 - AluSx SINE Alu -30 282 1 878 264 29 119 chrX 130777194 130777425 -46196715 - L1MA4 LINE L1 -5064 264 14 3680 251 25 19 chrX 130777438 130778527 -46195613 - L1MB5 LINE L1 -814 5332 4232 2181 115 7 0 chrX 130778527 130778822 -46195318 - AluSx SINE Alu -14 298 2 3680 251 25 19 chrX 130778822 130779055 -46195085 - L1MB5 LINE L1 -1914 4232 4002 1520 243 107 41 chrX 130779259 130779939 -46194201 + MER50 LTR ERV1 10 734 0 198 0 0 0 chrX 130780054 130780076 -46194064 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 2000 140 3 0 chrX 130780080 130780380 -46193760 + AluSx SINE Alu 1 301 -11 330 45 0 0 chrX 130782729 130782773 -46191367 + (TG)n Simple_repeat Simple_repeat 2 45 0 181 145 36 24 chrX 130782941 130783024 -46191116 + (TA)n Simple_repeat Simple_repeat 2 85 0 570 149 17 17 chrX 130783035 130783210 -46190930 + (TA)n Simple_repeat Simple_repeat 2 176 0 1540 168 27 8 chrX 130783250 130783512 -46190628 - AluSx SINE Alu -45 267 1 21 26 0 26 chrX 130783746 130783763 -46190377 + AT_rich Low_complexity Low_complexity 1 17 -21 2337 82 3 0 chrX 130783763 130784057 -46190083 - AluSp SINE Alu -18 295 1 21 26 0 26 chrX 130784057 130784078 -46190062 + AT_rich Low_complexity Low_complexity 17 38 0 2150 106 0 3 chrX 130784310 130784602 -46189538 + AluSg SINE Alu 1 291 -19 2247 106 3 0 chrX 130787185 130787486 -46186654 + AluSp SINE Alu 1 302 -11 2002 151 0 0 chrX 130787597 130787901 -46186239 + AluSx SINE Alu 1 304 -8 266 211 14 14 chrX 130788083 130788154 -46185986 + (TA)n Simple_repeat Simple_repeat 1 71 0 1694 180 0 3 chrX 130788481 130788770 -46185370 + AluJo SINE Alu 1 288 -24 306 291 104 28 chrX 130789026 130789208 -46184932 - L1ME4a LINE L1 -107 6014 5819 2949 204 80 16 chrX 130789228 130790033 -46184107 - L1MB5 LINE L1 0 6174 5319 5088 175 26 2 chrX 130790045 130791281 -46182859 - L1MA4 LINE L1 -22 6460 5198 1593 240 29 2 chrX 130791280 130791692 -46182448 - L1MA4 LINE L1 -3380 2948 2526 * 243 88 0 0 chrX 130791699 130791733 -46182407 + (TC)n Simple_repeat Simple_repeat 2 35 0 2421 103 0 0 chrX 130791733 130792045 -46182095 - AluSx SINE Alu 0 312 1 1478 274 39 16 chrX 130792088 130792580 -46181560 - L1MA4 LINE L1 -4812 516 14 3462 255 34 27 chrX 130792593 130793964 -46180176 - L1MB5 LINE L1 -814 5332 3952 2360 94 0 13 chrX 130796450 130796758 -46177382 + AluSx SINE Alu 1 304 -8 282 95 0 0 chrX 130796865 130796907 -46177233 + (TG)n Simple_repeat Simple_repeat 2 43 0 561 233 23 23 chrX 130796968 130797101 -46177039 + FLAM_A SINE Alu 1 133 0 272 137 20 0 chrX 130797932 130797983 -46176157 + T-rich Low_complexity Low_complexity 3 54 0 342 274 0 0 chrX 130800508 130800610 -46173530 - L1MB5 LINE L1 -3498 2648 2547 1311 255 39 14 chrX 130800640 130801126 -46173014 - L1MDb LINE L1 -1433 5211 4714 4878 232 48 27 chrX 130801140 130801486 -46172654 - L1M4 LINE L1 -2216 4428 4091 1565 208 10 0 chrX 130801486 130801780 -46172360 - AluJo SINE Alu -15 297 1 4878 232 48 27 chrX 130801780 130805381 -46168759 - L1M4 LINE L1 -2553 4091 325 7265 170 18 32 chrX 130805608 130807820 -46166320 + L1PB1 LINE L1 3614 5791 -360 347 139 60 0 chrX 130807820 130807986 -46166154 + (TA)n Simple_repeat Simple_repeat 1 176 0 696 187 0 0 chrX 130807991 130808130 -46166010 - L1MDb LINE L1 -2394 4250 4112 531 215 0 0 chrX 130808228 130808400 -46165740 + (TA)n Simple_repeat Simple_repeat 1 172 0 1922 153 38 12 chrX 130808400 130808746 -46165394 + L1PB1 LINE L1 5782 6136 -15 7429 69 1 9 chrX 130808748 130809546 -46164594 - HERVL-A1 LTR ERVL -4667 987 197 1872 119 0 4 chrX 130809546 130809797 -46164343 - AluSx SINE Alu -17 295 46 7429 69 1 9 chrX 130809797 130809993 -46164147 - HERVL-A1 LTR ERVL -5457 197 1 3161 71 54 5 chrX 130809993 130810029 -46164111 - MLT2A1 LTR ERVL 0 444 411 599 0 14 0 chrX 130810029 130810100 -46164040 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 3161 71 54 5 chrX 130810100 130810486 -46163654 - MLT2A1 LTR ERVL -33 411 1 281 182 101 101 chrX 130810490 130810589 -46163551 - MLT1B LTR MaLR -291 99 1 2121 243 49 46 chrX 130810739 130811371 -46162769 - L1MDb LINE L1 -3022 3622 2993 256 103 0 0 chrX 130811371 130811410 -46162730 - MADE1 DNA Mariner -41 39 1 2121 243 49 46 chrX 130811410 130811911 -46162229 - L1MDb LINE L1 -3651 2993 2495 1054 165 61 137 chrX 130811911 130812304 -46161836 + MLT1A1 LTR MaLR 3 365 0 2121 243 49 46 chrX 130812304 130813078 -46161062 - L1MDb LINE L1 -4149 2495 1676 2327 100 12 0 chrX 130813078 130813409 -46160731 - L1PA13 LINE L1 -1 6162 5828 231 36 0 0 chrX 130813409 130813437 -46160703 + (TTG)n Simple_repeat Simple_repeat 2 29 0 1237 91 0 0 chrX 130813439 130813593 -46160547 - AluSg/x SINE Alu -29 283 130 281 263 47 52 chrX 130813612 130813784 -46160356 - L1MDb LINE L1 -4954 1690 1521 550 307 156 33 chrX 130815045 130815527 -46158613 - MLT1K LTR MaLR -6 582 42 739 299 129 25 chrX 130817682 130818417 -46155723 + L1MDa LINE L1 1283 2134 -4471 21 0 0 0 chrX 130818475 130818496 -46155644 + AT_rich Low_complexity Low_complexity 1 21 0 1492 216 84 7 chrX 130818667 130818749 -46155391 - Charlie1a DNA MER1_type -1306 1455 1381 276 77 0 0 chrX 130818749 130818788 -46155352 + (TA)n Simple_repeat Simple_repeat 1 39 0 1492 216 84 7 chrX 130818788 130819169 -46154971 - Charlie1a DNA MER1_type -1380 1381 956 5419 88 4 1 chrX 130819171 130819958 -46154182 - L1PA13 LINE L1 -15 6148 5360 2416 160 29 134 chrX 130819960 130820121 -46154019 - Charlie1a DNA MER1_type -1803 958 782 1593 145 19 15 chrX 130820121 130820383 -46153757 - AluSx SINE Alu -49 263 1 2416 160 29 134 chrX 130820383 130820417 -46153723 - Charlie1a DNA MER1_type -1979 782 746 1795 157 3 7 chrX 130820417 130820703 -46153437 + AluJb SINE Alu 1 285 -27 2416 160 29 134 chrX 130820703 130821269 -46152871 - Charlie1a DNA MER1_type -2015 746 276 513 190 0 0 chrX 130821269 130821369 -46152771 - Charlie1a DNA MER1_type -1301 154 55 551 101 112 0 chrX 130821371 130821460 -46152680 + 5S rRNA rRNA 2 100 -21 270 314 0 0 chrX 130821448 130821518 -46152622 - Charlie1a DNA MER1_type -1384 71 2 * 2014 138 3 10 chrX 130821565 130821856 -46152284 + AluSx SINE Alu 3 291 -21 575 354 46 20 chrX 130822657 130822959 -46151181 - L3 LINE CR1 -1 1576 1267 402 267 14 111 chrX 130823110 130823327 -46150813 + MLT1L LTR MaLR 2 197 -418 233 200 94 12 chrX 130823639 130823724 -46150416 + MLT1L LTR MaLR 516 607 -8 656 288 118 0 chrX 130823923 130824135 -46150005 - MIR SINE MIR -6 256 20 355 276 119 8 chrX 130824349 130824483 -46149657 + MIR SINE MIR 70 218 -44 310 214 183 24 chrX 130824535 130824661 -46149479 - MER97b DNA MER1_type? -874 179 34 220 292 83 14 chrX 130825294 130825366 -46148774 + L2 LINE L2 3185 3261 -52 248 302 0 0 chrX 130825527 130825590 -46148550 + (TATG)n Simple_repeat Simple_repeat 1 63 0 3162 224 52 28 chrX 130826132 130827266 -46146874 - L1M4 LINE L1 -1914 4232 3072 27392 55 2 3 chrX 130827271 130830790 -46143350 + HERV17 LTR ERV1 3635 7150 -1476 299 26 0 0 chrX 130830783 130830821 -46143319 + HERV17 LTR ERV1 7511 7548 -1078 * 1964 79 0 0 chrX 130830811 130831076 -46143064 + HERV17 LTR ERV1 8335 8599 -27 1875 112 4 0 chrX 130831076 130831352 -46142788 + L1PB1 LINE L1 5867 6143 -8 1055 92 35 29 chrX 130831355 130831375 -46142765 + L1MA3 LINE L1 6130 6148 -157 2038 147 3 22 chrX 130831375 130831689 -46142451 + AluSx SINE Alu 1 308 -4 1055 92 35 29 chrX 130831689 130831842 -46142298 + L1MA3 LINE L1 6148 6304 -1 429 239 0 39 chrX 130831845 130831975 -46142165 + L1M4 LINE L1 2948 3072 -3074 12328 198 48 10 chrX 130831976 130834837 -46139303 - L1PBa LINE L1 -1235 5627 2875 240 35 0 0 chrX 130834837 130834866 -46139274 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 12328 198 48 10 chrX 130834866 130837268 -46136872 - L1PBa LINE L1 -3987 2875 6 5312 124 19 34 chrX 130837281 130838182 -46135958 - L1MA3 LINE L1 -166 7558 6691 2238 111 18 47 chrX 130838182 130838568 -46135572 - THE1C LTR MaLR 0 375 1 5312 124 19 34 chrX 130838568 130839055 -46135085 - L1MA3 LINE L1 -1033 6691 6198 * 19533 124 34 2 chrX 130839041 130840460 -46133680 - L1MA3 LINE L1 -4335 3230 1858 312 27 0 0 chrX 130840460 130840497 -46133643 + (TC)n Simple_repeat Simple_repeat 2 38 0 19533 124 34 2 chrX 130840497 130842196 -46131944 - L1MA3 LINE L1 -5707 1858 12 752 205 11 0 chrX 130842196 130842386 -46131754 - L1M4 LINE L1 -3188 3769 3578 1936 256 9 75 chrX 130842396 130842966 -46131174 - L1M4 LINE L1 -6223 636 112 2327 54 4 0 chrX 130842966 130843272 -46130868 - AluY SINE Alu 0 311 5 1936 256 9 75 chrX 130843272 130843352 -46130788 - L1M4 LINE L1 -6747 112 28 342 98 0 0 chrX 130844772 130844823 -46129317 + (CA)n Simple_repeat Simple_repeat 1 51 0 953 102 12 12 chrX 130845663 130845830 -46128310 - L1MA7 LINE L1 0 6291 6125 7609 45 0 1 chrX 130845830 130847541 -46126599 + L1PA5 LINE L1 4435 6141 -13 2855 130 14 16 chrX 130847544 130848045 -46126095 - L1MA7 LINE L1 -152 6139 5640 480 341 58 9 chrX 130848046 130848269 -46125871 - MLT1K LTR MaLR -322 266 33 440 329 38 6 chrX 130849140 130849298 -46124842 - MIR SINE MIR 0 262 100 860 176 58 125 chrX 130850610 130850986 -46123154 - L1MC4 LINE L1 -1 8041 7691 313 369 67 0 chrX 130851212 130851407 -46122733 + HERV16 LTR ERVL 1172 1379 -3617 2810 145 127 92 chrX 130851408 130851559 -46122581 - MER52C LTR ERV1 0 1278 1134 468 139 0 23 chrX 130851559 130851670 -46122470 + AluSg/x SINE Alu 217 310 0 2810 145 127 92 chrX 130851670 130852555 -46121585 - MER52C LTR ERV1 -144 1134 1 1088 338 52 16 chrX 130852919 130853493 -46120647 + HERV16 LTR ERVL 1882 2476 -3178 318 352 77 0 chrX 130853641 130853863 -46120277 + HERV16 LTR ERVL 2734 2956 -2040 554 347 38 30 chrX 130853865 130854237 -46119903 + HERV16 LTR ERVL 3248 3622 -2142 2050 94 7 36 chrX 130854637 130855051 -46119089 - L1P LINE L1 -743 5403 5017 2459 110 29 0 chrX 130855052 130855433 -46118707 + L1PA13 LINE L1 5437 5828 -335 275 254 0 45 chrX 130855515 130855582 -46118558 + MER91 DNA MER1_type 133 196 0 2187 71 0 7 chrX 130856084 130856364 -46117776 + AluY SINE Alu 34 311 0 704 228 84 0 chrX 130856486 130856653 -46117487 - MER117 DNA MER1_type -11 186 6 303 28 0 0 chrX 130856933 130856969 -46117171 + (TG)n Simple_repeat Simple_repeat 2 37 0 256 167 39 10 chrX 130857423 130857525 -46116615 + (TA)n Simple_repeat Simple_repeat 1 105 0 761 222 43 34 chrX 130857541 130857748 -46116392 + MER3 DNA MER1_type 1 209 0 243 242 48 0 chrX 130859233 130859295 -46114845 + U6 snRNA snRNA 1 65 -42 772 185 7 7 chrX 130860265 130860400 -46113740 + MER5A DNA MER1_type 2 136 -53 1429 186 68 0 chrX 130860425 130860732 -46113408 - L1MC4 LINE L1 -195 7847 7520 279 283 0 0 chrX 130860750 130860810 -46113330 + MER5A DNA MER1_type 130 189 0 614 13 13 0 chrX 130861063 130861138 -46113002 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 223 258 32 16 chrX 130861438 130861500 -46112640 - L2 LINE L2 -228 3085 3023 253 208 0 0 chrX 130861615 130861663 -46112477 + L2 LINE L2 2231 2278 -1036 1648 183 41 29 chrX 130863707 130864122 -46110018 + L1MB7 LINE L1 5764 6183 -1 1627 175 25 11 chrX 130864258 130864572 -46109568 - AluJb SINE Alu 0 318 1 253 288 96 40 chrX 130864628 130864753 -46109387 + MIR SINE MIR 121 252 -10 5646 93 2 12 chrX 130865918 130866765 -46107375 - L1PA10 LINE L1 0 6168 5330 5544 155 29 2 chrX 130866857 130868252 -46105888 - L1MA9 LINE L1 0 6312 4875 1540 252 62 20 chrX 130868386 130868984 -46105156 - L1M3e LINE L1 -5082 1948 1 288 0 0 0 chrX 130869382 130869414 -46104726 + (TG)n Simple_repeat Simple_repeat 2 33 0 347 282 179 20 chrX 130869493 130869688 -46104452 - L2 LINE L2 -656 2658 2433 267 31 0 0 chrX 130869743 130869775 -46104365 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 801 318 27 88 chrX 130869779 130870322 -46103818 - L2 LINE L2 -15 3257 2752 1649 179 23 0 chrX 130870349 130870702 -46103438 - L1MD1 LINE L1 0 6636 6276 5222 248 60 31 chrX 130870703 130872709 -46101431 - L1MD1 LINE L1 -898 5642 3559 1559 192 33 7 chrX 130872709 130873011 -46101129 - AluJo SINE Alu -2 310 1 5222 248 60 31 chrX 130873011 130873317 -46100823 - L1MD1 LINE L1 -2981 3559 3263 1178 190 31 0 chrX 130873330 130873588 -46100552 + L1PA15 LINE L1 4406 4671 -1475 1678 156 50 36 chrX 130873588 130873946 -46100194 + THE1C LTR MaLR 1 363 -12 5743 116 16 9 chrX 130873949 130875443 -46098697 + L1PA15 LINE L1 4666 6165 0 3994 201 56 38 chrX 130875454 130877000 -46097140 - L1MD1 LINE L1 -3269 3271 1690 2837 3 0 6 chrX 130877000 130877313 -46096827 - AluYa5 SINE Alu 0 311 1 3994 201 56 38 chrX 130877313 130877494 -46096646 - L1MD1 LINE L1 -4850 1690 1514 1799 176 7 0 chrX 130877495 130877785 -46096355 + AluJb SINE Alu 1 292 -20 218 32 32 0 chrX 130877789 130877820 -46096320 + (GGAGAA)n Simple_repeat Simple_repeat 5 36 0 302 148 89 2 chrX 130877820 130877897 -46096243 - L1MD1 LINE L1 -5016 1524 1442 1516 133 66 23 chrX 130877898 130878273 -46095867 - L1MA5 LINE L1 -5 6292 5879 * 2889 225 56 58 chrX 130878245 130878376 -46095764 - L1MD1 LINE L1 -5060 1480 1350 219 36 0 0 chrX 130878376 130878404 -46095736 + (TTG)n Simple_repeat Simple_repeat 2 29 0 2889 225 56 58 chrX 130878404 130879023 -46095117 - L1MD1 LINE L1 -5190 1350 731 2052 119 0 26 chrX 130879023 130879325 -46094815 + AluJb SINE Alu 1 294 -18 2889 225 56 58 chrX 130879325 130879853 -46094287 - L1MD1 LINE L1 -5809 731 34 310 355 97 21 chrX 130879854 130880040 -46094100 - L2 LINE L2 -561 2753 2554 205 247 186 10 chrX 130880076 130880173 -46093967 - L2 LINE L2 0 3313 3200 443 314 41 33 chrX 130880203 130880596 -46093544 - L2 LINE L2 -780 2534 2043 556 353 40 7 chrX 130880923 130881393 -46092747 + MERVL-B3 LTR ERVL 777 1266 -4388 332 312 65 20 chrX 130881702 130881923 -46092217 + MERVL-B3 LTR ERVL 1596 1837 -3829 2881 132 38 4 chrX 130881943 130882421 -46091719 - Tigger1 DNA MER2_type 0 2418 1925 * 3409 151 5 0 chrX 130882418 130882975 -46091165 - Tigger1 DNA MER2_type -1858 560 1 1733 324 56 30 chrX 130882979 130883947 -46090193 + MERVL-B3 LTR ERVL 1887 2879 -2885 7480 36 4 0 chrX 130883966 130884939 -46089201 - L1PA5 LINE L1 -5 6149 5175 855 132 126 11 chrX 130884939 130885121 -46089019 - MSTA LTR MaLR -48 380 178 4005 308 43 59 chrX 130885130 130885346 -46088794 + MERVL-B3 LTR ERVL 2901 3119 -2645 2456 79 0 16 chrX 130885346 130885661 -46088479 - AluY SINE Alu -1 310 1 4005 308 43 59 chrX 130885661 130886354 -46087786 + MERVL-B3 LTR ERVL 3119 3822 -1942 2617 130 11 39 chrX 130886354 130886457 -46087683 + L1PA16 LINE L1 5711 5815 -351 2429 91 0 0 chrX 130886457 130886765 -46087375 + AluSg SINE Alu 1 308 -2 2617 130 11 39 chrX 130886765 130887121 -46087019 + L1PA16 LINE L1 5815 6157 -9 4005 308 43 59 chrX 130887121 130888731 -46085409 + MERVL-B3 LTR ERVL 3822 5380 -384 2305 105 3 0 chrX 130888754 130889060 -46085080 - AluSp SINE Alu -6 307 1 2504 243 36 27 chrX 130889108 130890664 -46083476 - L1ME1 LINE L1 -43 6123 4556 3631 155 16 16 chrX 130890735 130891413 -46082727 - L1MB2 LINE L1 -3 6168 5491 8768 238 57 18 chrX 130891440 130894936 -46079204 + L1MCa LINE L1 1932 5567 -859 194 364 10 20 chrX 130897097 130897196 -46076944 + MIR SINE MIR 33 130 -78 629 344 83 10 chrX 130898929 130899339 -46074801 + MERVL-B3 LTR ERVL 2633 3072 -2413 2013 145 16 3 chrX 130899340 130899713 -46074427 + MERVL-B3 LTR ERVL 5383 5760 -4 2650 221 3 42 chrX 130899714 130900284 -46073856 + MLT2B3 LTR ERVL 5 552 -2 1520 321 86 31 chrX 130900285 130900525 -46073615 + ERVL LTR ERVL 3108 3333 -2431 1813 183 3 3 chrX 130900525 130900836 -46073304 + AluJo SINE Alu 1 311 -1 1520 321 86 31 chrX 130900836 130901526 -46072614 + ERVL LTR ERVL 3333 4089 -1675 514 247 14 14 chrX 130901527 130901673 -46072467 + MLT1D LTR MaLR 8 153 -396 23 0 0 0 chrX 130901936 130901959 -46072181 + AT_rich Low_complexity Low_complexity 1 23 0 748 99 0 0 chrX 130902114 130902215 -46071925 + AluSg/x SINE Alu 194 294 -16 1093 209 65 85 chrX 130902423 130902508 -46071632 - L1MC4 LINE L1 -381 7661 7576 1985 124 0 3 chrX 130902508 130902834 -46071306 - AluSx SINE Alu 0 325 1 1093 209 65 85 chrX 130902834 130903193 -46070947 - L1MC4 LINE L1 -466 7576 7225 314 153 0 0 chrX 130903234 130903292 -46070848 - Alu SINE Alu -11 291 239 2065 109 11 7 chrX 130903297 130903612 -46070528 - AluSx SINE Alu 0 316 1 4745 206 51 64 chrX 130903620 130905138 -46069002 - L1MC4 LINE L1 -6 8036 6539 923 171 79 71 chrX 130905151 130905391 -46068749 + MLT1D LTR MaLR 258 499 -6 334 297 48 48 chrX 130906709 130906918 -46067222 + L1M4 LINE L1 3790 3998 -2148 244 115 0 19 chrX 130907029 130907081 -46067059 - L1MA9 LINE L1 0 6312 6262 180 0 0 0 chrX 130907097 130907117 -46067023 + (GA)n Simple_repeat Simple_repeat 1 20 0 1542 164 15 19 chrX 130907120 130907389 -46066751 - AluJb SINE Alu -44 268 1 1274 162 0 20 chrX 130907390 130907643 -46066497 - L1MA9 LINE L1 -36 6276 6029 414 177 19 108 chrX 130907641 130907799 -46066341 + L1M4 LINE L1 3825 3968 -2178 * 8579 79 23 2 chrX 130907832 130909034 -46065106 + HERVH48 LTR ERV1 5420 6646 -8 2270 76 0 58 chrX 130909041 130909384 -46064756 + MER48 LTR ERV1 4 326 -61 1432 247 77 18 chrX 130909450 130910012 -46064128 - L1M4 LINE L1 -1618 4528 3934 4686 143 30 16 chrX 130910013 130911076 -46063064 + L1MA4A LINE L1 5051 6125 -178 224 30 30 0 chrX 130911101 130911134 -46063006 + (TA)n Simple_repeat Simple_repeat 1 34 0 2092 117 3 0 chrX 130911134 130911424 -46062716 - AluSp SINE Alu -20 293 3 1090 121 0 0 chrX 130911427 130911600 -46062540 + L1MA4A LINE L1 6121 6293 -10 2286 247 38 49 chrX 130911604 130912106 -46062034 - L1M4 LINE L1 -2191 3955 3449 2279 109 0 3 chrX 130912106 130912418 -46061722 + AluSx SINE Alu 1 311 -1 2286 247 38 49 chrX 130912418 130912551 -46061589 - L1M4 LINE L1 -2697 3449 3316 2180 100 10 0 chrX 130912551 130912840 -46061300 - AluSq SINE Alu -21 292 1 2286 247 38 49 chrX 130912840 130913297 -46060843 - L1M4 LINE L1 -2830 3316 2874 2285 95 0 44 chrX 130913307 130913623 -46060517 + AluSx SINE Alu 1 302 -10 1643 88 4 0 chrX 130913732 130913960 -46060180 - L1PA10 LINE L1 -1 6167 5939 438 312 37 9 chrX 130913964 130914179 -46059961 - L1MEc LINE L1 -6154 242 22 397 320 95 3 chrX 130914181 130914475 -46059665 - L1MEd LINE L1 -5279 840 520 1798 187 0 13 chrX 130915687 130915997 -46058143 + AluJo SINE Alu 6 311 -1 5134 146 28 25 chrX 130916020 130916498 -46057642 + L1MA8 LINE L1 4877 5352 -939 2191 119 3 3 chrX 130916498 130916801 -46057339 - AluSq SINE Alu -8 305 3 5134 146 28 25 chrX 130916801 130917720 -46056420 + L1MA8 LINE L1 5352 6288 -3 21 26 0 26 chrX 130917720 130917736 -46056404 + AT_rich Low_complexity Low_complexity 1 16 -22 2488 48 0 0 chrX 130917736 130918027 -46056113 - AluY SINE Alu -20 291 1 21 26 0 26 chrX 130918027 130918049 -46056091 + AT_rich Low_complexity Low_complexity 16 38 0 688 300 0 16 chrX 130918187 130918377 -46055763 - MIR SINE MIR -3 259 73 654 283 86 0 chrX 130920532 130920730 -46053410 - MER58C DNA MER1_type 0 215 1 245 289 39 19 chrX 130920853 130920957 -46053183 - L1 LINE L1 -1155 4991 4886 1388 296 30 40 chrX 130921005 130921861 -46052279 + L1MEc LINE L1 1510 2357 -4039 765 248 63 50 chrX 130921890 130922286 -46051854 - L1 LINE L1 -1910 4236 3836 2303 202 33 3 chrX 130922288 130923349 -46050791 - L1MB7 LINE L1 -1 6183 5049 2393 99 0 0 chrX 130924512 130924814 -46049326 + AluSx SINE Alu 1 302 -10 2264 89 0 0 chrX 130925228 130925544 -46048596 - AluSg SINE Alu 0 316 1 1199 164 5 9 chrX 130925546 130925759 -46048381 - AluJb SINE Alu -16 296 85 1891 151 42 12 chrX 130926051 130926388 -46047752 + MER7A DNA MER2_type 1 345 -1 842 88 0 9 chrX 130926432 130926545 -46047595 - AluSc SINE Alu -24 285 174 198 222 0 0 chrX 130926613 130926667 -46047473 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 1438 162 4 36 chrX 130927015 130927262 -46046878 + AluJo SINE Alu 1 239 -73 30 0 0 0 chrX 130927285 130927315 -46046825 + AT_rich Low_complexity Low_complexity 1 30 0 2417 72 6 132 chrX 130927807 130928291 -46045849 + MER4A LTR ERV1 1 423 -241 686 152 170 24 chrX 130928309 130928474 -46045666 + MER4C LTR ERV1 277 465 0 22 70 0 0 chrX 130930539 130930582 -46043558 + AT_rich Low_complexity Low_complexity 1 43 0 186 43 0 0 chrX 130930836 130930859 -46043281 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chrX 130931107 130931130 -46043010 + AT_rich Low_complexity Low_complexity 1 23 0 1243 36 0 0 chrX 130931854 130931993 -46042147 - L1PA3 LINE L1 -3 6152 6014 387 0 0 0 chrX 130935479 130935522 -46038618 + (TG)n Simple_repeat Simple_repeat 1 43 0 2230 84 0 7 chrX 130936565 130936875 -46037265 - AluSx SINE Alu 0 308 1 279 0 0 0 chrX 130937250 130937281 -46036859 + (CA)n Simple_repeat Simple_repeat 2 32 0 292 282 0 0 chrX 130938978 130939080 -46035060 + L1M LINE L1 5307 5408 -762 182 88 0 29 chrX 130939194 130939228 -46034912 + (TA)n Simple_repeat Simple_repeat 1 33 0 270 188 100 19 chrX 130939310 130939470 -46034670 + (TTAAA)n Simple_repeat Simple_repeat 4 176 0 306 279 23 0 chrX 130939473 130939559 -46034581 + L2 LINE L2 3226 3313 0 1144 138 0 0 chrX 130939780 130939939 -46034201 - AluSg/x SINE Alu -17 295 137 243 0 0 0 chrX 130939939 130939966 -46034174 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2005 71 8 8 chrX 130939966 130940221 -46033919 - AluSx SINE Alu -28 284 30 373 289 73 73 chrX 130940221 130940774 -46033366 + HAL1 LINE L1 1841 2396 -111 2492 68 0 0 chrX 130940774 130941069 -46033071 + AluY SINE Alu 1 295 -16 373 289 73 73 chrX 130941069 130941176 -46032964 + HAL1 LINE L1 2395 2501 -6 192 125 0 0 chrX 130941189 130941221 -46032919 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 1578 190 371 8 chrX 130941223 130941703 -46032437 + MLT1E1 LTR MaLR 1 654 0 1424 225 65 22 chrX 130941744 130942100 -46032040 + MLT1A2 LTR MaLR 4 374 0 255 31 0 0 chrX 130942271 130942303 -46031837 + (TG)n Simple_repeat Simple_repeat 2 33 0 2057 133 0 7 chrX 130942517 130942818 -46031322 + AluSx SINE Alu 1 299 -13 234 219 62 31 chrX 130943876 130943940 -46030200 - LTR41 LTR ERVL -705 68 3 2516 81 0 0 chrX 130945041 130945350 -46028790 + AluY SINE Alu 1 309 -2 2404 70 3 13 chrX 130947932 130948230 -46025910 - AluSp SINE Alu -18 295 1 2178 120 0 3 chrX 130948230 130948529 -46025611 - AluSx SINE Alu -14 298 1 48 72 0 0 chrX 130948662 130948759 -46025381 + AT_rich Low_complexity Low_complexity 1 97 0 338 317 41 7 chrX 130948901 130949046 -46025094 + LTR33 LTR ERVL 8 157 -364 1995 88 4 11 chrX 130949369 130949631 -46024509 - AluSc SINE Alu -49 260 1 386 336 20 55 chrX 130949897 130949995 -46024145 + MIR SINE MIR 18 118 -144 1865 111 0 78 chrX 130949995 130950347 -46023793 + AluSg SINE Alu 1 328 0 386 336 20 55 chrX 130950347 130950500 -46023640 + MIR SINE MIR 118 261 -1 454 315 89 58 chrX 130950864 130951404 -46022736 + HAL1 LINE L1 1155 1715 -792 2333 95 0 0 chrX 130951404 130951708 -46022432 + AluSx SINE Alu 1 304 -8 454 315 89 58 chrX 130951708 130951739 -46022401 + HAL1 LINE L1 1715 1744 -763 282 254 52 100 chrX 130952214 130952505 -46021635 + L1M4 LINE L1 2140 2416 -3730 544 256 36 63 chrX 130952506 130952621 -46021519 - L1M4 LINE L1 -1557 4589 4472 2389 78 3 0 chrX 130952621 130952916 -46021224 - AluSp SINE Alu -17 296 1 544 256 36 63 chrX 130952916 130952978 -46021162 - L1M4 LINE L1 -1674 4472 4410 2224 97 20 7 chrX 130952978 130953278 -46020862 - AluSq SINE Alu -9 304 1 544 256 36 63 chrX 130953278 130953400 -46020740 - L1M4 LINE L1 -1736 4410 4297 343 273 113 36 chrX 130953456 130953650 -46020490 - L1M4 LINE L1 -1949 4197 3989 1145 285 84 25 chrX 130953659 130954047 -46020093 + MLT1H LTR MaLR 45 463 -86 2333 104 3 0 chrX 130954047 130954354 -46019786 - AluSx SINE Alu -4 308 1 1145 285 84 25 chrX 130954354 130954447 -46019693 + MLT1H LTR MaLR 463 549 0 600 278 62 39 chrX 130954460 130954892 -46019248 - L1M4 LINE L1 -2158 3988 3547 2261 99 3 0 chrX 130954898 130955192 -46018948 + AluSq SINE Alu 6 300 -13 1234 163 43 30 chrX 130955977 130956319 -46017821 + MER31B LTR ERV1 1 466 0 3035 241 93 51 chrX 130958335 130958427 -46015713 + L1M4 LINE L1 -259 4294967124 -6554 2403 43 0 0 chrX 130958427 130958734 -46015406 + AluY SINE Alu 1 307 0 3035 241 93 51 chrX 130958734 130959420 -46014720 + L1M4 LINE L1 -172 484 -5898 2333 74 3 0 chrX 130959420 130959749 -46014391 - AluSq SINE Alu 0 330 1 3035 241 93 51 chrX 130959749 130960012 -46014128 + L1M4 LINE L1 484 735 -5647 2306 77 3 0 chrX 130960012 130960324 -46013816 - AluSc SINE Alu 0 309 1 3035 241 93 51 chrX 130960324 130962022 -46012118 + L1M4 LINE L1 735 2785 -3597 1754 154 14 7 chrX 130962022 130962330 -46011810 - AluSx SINE Alu 0 310 1 3035 241 93 51 chrX 130962330 130962376 -46011764 + L1M4 LINE L1 2785 2828 -3554 610 244 34 24 chrX 130963109 130963318 -46010822 - PABL_B LTR ERV1 0 667 457 2272 88 3 7 chrX 130963630 130963938 -46010202 - AluSp SINE Alu -6 307 1 242 240 0 0 chrX 130964074 130964124 -46010016 - PABL_B LTR ERV1 -617 50 1 24 32 0 0 chrX 130964342 130964373 -46009767 + AT_rich Low_complexity Low_complexity 1 31 0 2875 134 33 17 chrX 130964376 130964898 -46009242 - L1MA4A LINE L1 -3 6300 5771 478 253 11 113 chrX 131065200 131065386 -45908754 - MIR SINE MIR -10 252 86 182 209 163 0 chrX 131065959 131066002 -45908138 - L2 LINE L2 -12 3260 3211 293 200 14 29 chrX 131066024 131066094 -45908046 + MIR SINE MIR 146 214 -48 322 331 62 12 chrX 131066120 131066280 -45907860 - MIR SINE MIR -15 247 80 196 298 0 0 chrX 131066401 131066458 -45907682 - L2 LINE L2 0 3272 3216 * 669 296 18 22 chrX 131066425 131066651 -45907489 - MIR SINE MIR -18 244 20 267 259 14 5 chrX 131067839 131067928 -45906212 + MIR SINE MIR 65 153 -55 198 290 50 10 chrX 131067962 131068062 -45906078 - MIR SINE MIR -11 251 148 195 244 90 26 chrX 131068046 131068124 -45906016 + MIR SINE MIR 174 256 -6 * 199 162 27 0 chrX 131068251 131068288 -45905852 - MIR3 SINE MIR -9 199 162 6852 17 0 0 chrX 131068453 131069233 -45904907 + L1PA3 LINE L1 5376 6155 0 327 85 0 0 chrX 131069837 131069884 -45904256 + MADE1 DNA Mariner 34 80 0 1935 166 19 25 chrX 131071029 131071396 -45902744 - MLT1A1 LTR MaLR 0 365 1 355 292 13 49 chrX 131071672 131071873 -45902267 - MIR SINE MIR -58 150 7 381 22 0 0 chrX 131071926 131071972 -45902168 + (CA)n Simple_repeat Simple_repeat 1 46 0 291 344 0 21 chrX 131072118 131072214 -45901926 - MIR SINE MIR -149 113 20 235 182 23 0 chrX 131072273 131072317 -45901823 + L1M4 LINE L1 2295 2339 -3807 3652 265 74 38 chrX 131072753 131076881 -45897259 + L1ME1 LINE L1 308 4589 -2352 406 156 16 0 chrX 131076882 131076946 -45897194 + MLT1D LTR MaLR 1 65 -440 255 153 92 0 chrX 131076946 131077044 -45897096 + (TA)n Simple_repeat Simple_repeat 1 107 0 1376 243 44 28 chrX 131077111 131077498 -45896642 + MLT1D LTR MaLR 113 505 0 825 203 7 0 chrX 131077499 131077647 -45896493 - HERVL74 LTR ERVL -3919 1766 1618 2605 228 103 15 chrX 131077756 131079127 -45895013 + L1ME1 LINE L1 5464 6954 -7 391 226 24 0 chrX 131079280 131079364 -45894776 + L3 LINE CR1 1232 1317 -260 958 227 58 18 chrX 131081094 131081319 -45892821 + MIR SINE MIR 28 261 -1 191 88 29 0 chrX 131081468 131081502 -45892638 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 387 295 165 19 chrX 131081687 131081855 -45892285 + MIR SINE MIR 11 191 -22 378 0 0 0 chrX 131082224 131082266 -45891874 + (TC)n Simple_repeat Simple_repeat 1 42 0 235 233 67 0 chrX 131082292 131082352 -45891788 - L2 LINE L2 0 3272 3209 648 220 102 1 chrX 131082888 131083086 -45891054 - MIR SINE MIR -6 256 42 260 293 8 119 chrX 131083201 131083454 -45890686 + L2 LINE L2 2272 2496 -818 1276 318 16 11 chrX 131083574 131083954 -45890186 + L2 LINE L2 2075 2456 -858 * 1587 264 14 31 chrX 131083943 131084368 -45889772 + L2 LINE L2 2896 3313 0 227 266 71 112 chrX 131084410 131084579 -45889561 + L2 LINE L2 2922 3083 -189 1866 223 69 42 chrX 131085347 131085898 -45888242 + L2 LINE L2 2175 2740 -574 2261 164 180 0 chrX 131085931 131086369 -45887771 + MLT2B1 LTR ERVL 1 517 -3 3135 166 55 24 chrX 131086377 131086960 -45887180 - L1MB5 LINE L1 -13 6161 5561 1537 227 30 53 chrX 131086968 131087307 -45886833 + L2 LINE L2 2757 3076 -237 2101 199 38 0 chrX 131087307 131087679 -45886461 - MLT1B LTR MaLR -4 386 1 1537 227 30 53 chrX 131087679 131087908 -45886232 + L2 LINE L2 3076 3309 -4 345 286 27 36 chrX 131088329 131088441 -45885699 + MIR3 SINE MIR 44 154 -54 476 317 117 54 chrX 131088447 131089267 -45884873 + L2 LINE L2 2384 3253 -19 505 309 11 17 chrX 131089416 131089594 -45884546 - MIR SINE MIR -2 260 84 201 121 0 0 chrX 131089962 131089995 -45884145 + (TG)n Simple_repeat Simple_repeat 2 34 0 299 319 146 62 chrX 131090407 131090551 -45883589 - MER91A DNA MER1_type -39 157 2 359 322 65 73 chrX 131090556 131090910 -45883230 + L2 LINE L2 2877 3227 -45 194 237 0 0 chrX 131090939 131090977 -45883163 + L2 LINE L2 3216 3253 -19 1389 192 82 2 chrX 131191083 131191750 -45782390 + L1MC3 LINE L1 5089 7321 -464 2282 88 7 3 chrX 131191761 131192067 -45782073 - AluYa5 SINE Alu -4 307 1 721 247 81 0 chrX 131192070 131192244 -45781896 - L1P LINE L1 -1800 4346 4159 292 169 56 11 chrX 131192295 131192384 -45781756 - L1 LINE L1 -2812 3334 3242 2290 151 33 32 chrX 131192384 131192934 -45781206 - MLT2A2 LTR ERVL -1 553 1 1314 220 13 38 chrX 131192934 131193325 -45780815 - L1P LINE L1 -2899 3247 2867 2554 54 0 3 chrX 131193631 131193929 -45780211 - AluY SINE Alu -14 297 1 1855 132 0 63 chrX 131193997 131194338 -45779802 - AluSq SINE Alu 0 322 1 256 259 0 0 chrX 131194338 131194392 -45779748 - MER21B LTR ERV1 -770 93 40 2039 131 0 7 chrX 131194558 131194840 -45779300 - AluSx SINE Alu -32 280 1 688 273 0 13 chrX 131194950 131195100 -45779040 - AluSg/x SINE Alu -30 282 135 1709 99 73 15 chrX 131195101 131195373 -45778767 - AluSx SINE Alu -6 306 19 860 148 0 22 chrX 131196082 131196217 -45777923 - FLAM_C SINE Alu -1 132 1 1558 172 45 36 chrX 131196265 131196602 -45777538 + THE1C LTR MaLR 1 340 -35 2262 116 3 3 chrX 131196603 131196914 -45777226 - AluSx SINE Alu -1 311 1 190 336 49 28 chrX 131198028 131198171 -45775969 + L2 LINE L2 3125 3270 -2 737 158 39 0 chrX 131198577 131198704 -45775436 + AluJ SINE Alu 2 133 -169 540 196 21 21 chrX 131198706 131198933 -45775207 + GA-rich Low_complexity Low_complexity 1 227 0 746 151 151 0 chrX 131198933 131199079 -45775061 + AluJ SINE Alu 133 300 -12 227 155 35 35 chrX 131199174 131199232 -45774908 - L1MC/D LINE L1 -1902 5906 5849 12000 52 5 3 chrX 131199372 131200853 -45773287 + L1P LINE L1 594 2077 -4069 1142 45 0 0 chrX 131200853 131200986 -45773154 + L1P LINE L1 2 134 -6012 1658 143 0 30 chrX 131201104 131201369 -45772771 - AluSx SINE Alu -55 257 1 1909 251 185 11 chrX 131201634 131202507 -45771633 + L2 LINE L2 2263 3285 -28 898 178 13 13 chrX 131202549 131202745 -45771395 + AluJo SINE Alu 137 302 0 201 121 0 0 chrX 131203035 131203068 -45771072 + (CA)n Simple_repeat Simple_repeat 1 33 0 2346 84 0 13 chrX 131204261 131204570 -45769570 - AluY SINE Alu -6 305 1 216 0 0 0 chrX 131204581 131204605 -45769535 + (T)n Simple_repeat Simple_repeat 1 24 0 1740 166 43 7 chrX 131205019 131205320 -45768820 - AluJb SINE Alu 0 312 1 234 279 0 15 chrX 131205320 131205388 -45768752 - MER5A DNA MER1_type -113 76 10 213 288 0 0 chrX 131205778 131205837 -45768303 - L2 LINE L2 -999 2315 2257 189 305 227 0 chrX 131205856 131206010 -45768130 - L2 LINE L2 -1338 1976 1788 921 85 0 0 chrX 131206085 131206203 -45767937 - AluSc SINE Alu -2 307 190 7347 28 0 6 chrX 131206217 131207083 -45767057 - L1PA2 LINE L1 0 6155 5295 235 336 43 17 chrX 131207628 131207744 -45766396 + MIR SINE MIR 19 137 -71 * 267 269 83 19 chrX 131207735 131207843 -45766297 - L2 LINE L2 -1 3312 3198 2064 131 0 10 chrX 131207970 131208284 -45765856 + AluSx SINE Alu 5 315 0 1031 214 60 4 chrX 131208348 131208600 -45765540 + L1M4 LINE L1 4660 4925 -1221 741 312 26 26 chrX 131209210 131209479 -45764661 - MER115 DNA AcHobo -391 302 34 499 125 0 0 chrX 131209941 131210013 -45764127 - LTR23 LTR ERV1 -230 207 136 536 217 57 0 chrX 131210043 131210149 -45763991 - AluJb SINE Alu -195 117 6 794 174 6 60 chrX 131210180 131210347 -45763793 + FRAM SINE Alu 2 159 -17 1340 210 60 0 chrX 131210356 131210637 -45763503 + AluJb SINE Alu 5 302 -10 8232 144 7 6 chrX 131210637 131211871 -45762269 - L1M1 LINE L1 -5299 2266 1028 5690 122 39 9 chrX 131211988 131213028 -45761112 - L1PA8 LINE L1 -76 6096 5030 1210 152 0 0 chrX 131213036 131213220 -45760920 - AluSg/x SINE Alu -2 310 127 1668 229 102 24 chrX 131213702 131214213 -45759927 - MER74B LTR ERVL -16 606 56 790 158 0 8 chrX 131214334 131214461 -45759679 + FLAM_C SINE Alu 2 127 -6 300 137 0 0 chrX 131214461 131214512 -45759628 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 895 337 47 19 chrX 131216056 131216872 -45757268 - ERVL LTR ERVL -3399 2365 1492 392 336 46 12 chrX 131217029 131217270 -45756870 - ERVL LTR ERVL -3809 1187 939 523 271 90 0 chrX 131217737 131217903 -45756237 + MIR SINE MIR 65 245 -17 233 276 0 0 chrX 131218641 131218699 -45755441 + L2 LINE L2 3027 3084 -188 8302 46 3 7 chrX 131218939 131219912 -45754228 + LTR5 LTR ERVK 1 969 0 608 270 98 22 chrX 131220057 131220331 -45753809 - L2 LINE L2 0 3313 3019 4838 159 20 20 chrX 131220505 131221420 -45752720 + L1PB1 LINE L1 5214 6128 -23 11218 59 1 2 chrX 131221605 131223029 -45751111 - L1P LINE L1 -3252 2894 1472 2631 229 134 33 chrX 131223372 131224243 -45749897 - HAL1 LINE L1 -521 1986 1028 1712 203 5 14 chrX 131224408 131224778 -45749362 + L1PB4 LINE L1 3315 3681 -2465 4648 36 3 29 chrX 131224778 131225361 -45748779 - L1PA4 LINE L1 -1 6154 5587 380 376 30 6 chrX 131225581 131225746 -45748394 + MIR3 SINE MIR 17 185 -23 1701 176 0 11 chrX 131225746 131226060 -45748080 - AluJb SINE Alu 0 313 3 407 269 62 7 chrX 131226128 131226273 -45747867 - MIR SINE MIR -13 249 97 2017 158 0 0 chrX 131226283 131226581 -45747559 + AluSx SINE Alu 1 298 -14 714 174 8 16 chrX 131226581 131226702 -45747438 - AluJo/FLAM SINE Alu -191 121 2 1392 199 51 0 chrX 131226703 131226995 -45747145 + L1PB4 LINE L1 4583 4889 -1257 5228 146 59 27 chrX 131227155 131227314 -45746826 + L1PB4 LINE L1 4883 5035 -1121 2039 121 0 0 chrX 131227314 131227596 -45746544 + AluSx SINE Alu 29 310 -2 5228 146 59 27 chrX 131227596 131228683 -45745457 + L1PB4 LINE L1 5035 6156 0 275 216 123 111 chrX 131228759 131228921 -45745219 - MLT1H LTR MaLR -275 274 111 549 252 63 43 chrX 131229125 131229379 -45744761 - L1MC5 LINE L1 -744 7217 6959 6119 167 21 18 chrX 131229437 131230754 -45743386 - L1MC1 LINE L1 -14 6319 4992 2387 90 3 0 chrX 131230754 131231054 -45743086 - AluSg SINE Alu -9 301 1 6119 167 21 18 chrX 131231054 131231068 -45743072 - L1MC1 LINE L1 -1341 4992 4980 2103 142 0 0 chrX 131231088 131231383 -45742757 - AluSx SINE Alu -17 295 1 880 131 0 0 chrX 131231387 131231509 -45742631 - AluJb SINE Alu -190 122 1 854 249 38 0 chrX 131231510 131231695 -45742445 - MSTD LTR MaLR -204 192 1 225 200 0 0 chrX 131231699 131231749 -45742391 - L1MC1 LINE L1 -1252 4894 4845 1052 282 58 16 chrX 131231760 131232134 -45742006 - L1MC4 LINE L1 -821 7072 6552 2019 128 42 0 chrX 131232134 131232423 -45741717 + AluSg SINE Alu 1 301 -9 1052 282 58 16 chrX 131232423 131232570 -45741570 - L1MC4 LINE L1 -1341 6552 6413 2333 185 55 18 chrX 131232763 131233272 -45740868 - L1MB2 LINE L1 0 6171 5644 2256 116 0 3 chrX 131233411 131233712 -45740428 + AluSp SINE Alu 3 302 -11 753 186 0 0 chrX 131233930 131234059 -45740081 + FLAM_C SINE Alu 5 133 0 2290 119 0 0 chrX 131234309 131234621 -45739519 + AluSx SINE Alu 1 312 0 907 117 0 29 chrX 131236397 131236571 -45737569 + FLAM_C SINE Alu 1 170 0 2345 113 0 0 chrX 131236596 131236896 -45737244 - AluSx SINE Alu -12 300 1 1445 139 38 0 chrX 131237212 131237449 -45736691 - Tigger1 DNA MER2_type -1 2417 2172 706 192 0 0 chrX 131237449 131237569 -45736571 - FRAM SINE Alu -17 159 40 3427 139 44 23 chrX 131237595 131238207 -45735933 - MER51A LTR ERV1 -9 625 1 296 109 109 0 chrX 131238207 131238248 -45735892 - AluSc SINE Alu -119 180 134 723 201 0 15 chrX 131238250 131238384 -45735756 - AluJo/FLAM SINE Alu -169 133 2 631 144 0 0 chrX 131238385 131238489 -45735651 - Tigger1 DNA MER2_type -237 2181 2078 1318 69 12 0 chrX 131238513 131238673 -45735467 - AluSg/x SINE Alu -66 244 83 11829 126 29 28 chrX 131238674 131239007 -45735133 - Tigger1 DNA MER2_type -325 2093 1762 2469 80 0 0 chrX 131239007 131239307 -45734833 + AluSc SINE Alu 2 301 -8 11829 126 29 28 chrX 131239307 131239813 -45734327 - Tigger1 DNA MER2_type -656 1762 1258 2406 75 0 31 chrX 131239813 131240134 -45734006 + AluY SINE Alu 1 311 0 11829 126 29 28 chrX 131240134 131241383 -45732757 - Tigger1 DNA MER2_type -1160 1258 1 577 266 107 0 chrX 131241860 131242037 -45732103 + MIR SINE MIR 2 197 -65 1288 106 0 22 chrX 131242297 131242476 -45731664 + AluSx SINE Alu 1 175 -137 1008 150 0 120 chrX 131242480 131242680 -45731460 + AluJb SINE Alu 129 304 -8 1957 162 0 3 chrX 131242835 131243138 -45731002 + AluJb SINE Alu 1 302 -10 30 77 0 0 chrX 131244022 131244087 -45730053 + AT_rich Low_complexity Low_complexity 1 65 0 25 31 0 0 chrX 131244117 131244149 -45729991 + AT_rich Low_complexity Low_complexity 1 32 0 248 326 208 17 chrX 131244662 131245018 -45729122 + L2 LINE L2 1256 1679 -1635 274 330 18 18 chrX 131245081 131245193 -45728947 + L2 LINE L2 1699 1810 -1504 375 292 94 50 chrX 131245237 131245291 -45728849 - L1MEc LINE L1 -3938 2783 2733 2006 146 27 0 chrX 131245291 131245465 -45728675 - AluSx SINE Alu -8 304 117 216 0 0 0 chrX 131245465 131245489 -45728651 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2006 146 27 0 chrX 131245489 131245608 -45728532 - AluSx SINE Alu -195 117 3 375 292 94 50 chrX 131245608 131245851 -45728289 - L1MEc LINE L1 -3988 2733 2473 276 312 71 39 chrX 131245854 131246008 -45728132 + L2 LINE L2 1988 2146 -1168 2045 142 13 13 chrX 131246056 131246359 -45727781 - AluSx SINE Alu -9 303 1 2296 66 11 7 chrX 131246610 131246928 -45727212 - AluY SINE Alu 0 311 1 229 322 55 16 chrX 131247007 131247190 -45726950 - L1M2 LINE L1 -4314 2535 2346 313 331 44 29 chrX 131247282 131247418 -45726722 - L1MEc LINE L1 -4863 1667 1530 338 222 14 0 chrX 131247419 131247491 -45726649 - Tigger5 DNA MER2_type 0 2323 2251 1409 210 83 0 chrX 131247558 131247718 -45726422 - AluJo SINE Alu -9 303 158 210 37 0 0 chrX 131247718 131247745 -45726395 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1409 210 83 0 chrX 131247745 131247860 -45726280 - AluJo SINE Alu -154 158 5 656 132 21 83 chrX 131247879 131248023 -45726117 - AluSp SINE Alu -178 135 1 2320 76 3 16 chrX 131248177 131248509 -45725631 - AluY SINE Alu 0 311 1 21 57 0 0 chrX 131249389 131249424 -45724716 + AT_rich Low_complexity Low_complexity 1 35 0 2523 84 0 0 chrX 131249639 131249949 -45724191 + AluY SINE Alu 1 310 -1 2372 66 7 7 chrX 131250169 131250473 -45723667 + AluY SINE Alu 1 304 -7 565 220 96 19 chrX 131250780 131250989 -45723151 - AluJo SINE Alu -6 306 82 788 168 0 36 chrX 131251251 131251388 -45722752 - AluJo SINE Alu -61 251 120 256 279 35 93 chrX 131251451 131251709 -45722431 - L1MEc LINE L1 -5265 1265 1023 878 162 27 54 chrX 131251739 131251924 -45722216 + Tigger2a DNA MER2_type 1 180 -254 248 392 21 0 chrX 131251958 131252101 -45722039 - L1MEc LINE L1 -5530 1000 855 27 0 0 0 chrX 131252321 131252348 -45721792 + AT_rich Low_complexity Low_complexity 1 27 0 1026 127 55 11 chrX 131252354 131252535 -45721605 - Tigger2a DNA MER2_type -1 443 255 278 376 0 0 chrX 131253074 131253215 -45720925 + (CCA)n Simple_repeat Simple_repeat 1 141 0 377 53 0 0 chrX 131253898 131253955 -45720185 - Tigger2a DNA MER2_type -179 265 209 5275 151 28 9 chrX 131253962 131255179 -45718961 + L1PA16 LINE L1 4938 6166 0 2296 110 3 0 chrX 131255183 131255482 -45718658 + AluSx SINE Alu 2 301 -11 1036 115 75 71 chrX 131255511 131255737 -45718403 - Tigger2a DNA MER2_type -207 227 1 332 304 82 7 chrX 131255872 131256007 -45718133 + L2 LINE L2 1838 1982 -1332 189 171 0 0 chrX 131256213 131256248 -45717892 + CT-rich Low_complexity Low_complexity 5 39 0 1276 170 43 58 chrX 131256281 131256558 -45717582 - AluJo SINE Alu -39 273 1 1131 242 85 3 chrX 131256595 131256888 -45717252 - L1MEc LINE L1 -6205 335 19 2178 106 0 13 chrX 131256905 131257208 -45716932 + AluY SINE Alu 1 299 -12 963 195 0 0 chrX 131257208 131257372 -45716768 + AluSg/x SINE Alu 134 297 -15 271 127 73 0 chrX 131257379 131257434 -45716706 - L1M4 LINE L1 -841 5305 5247 2481 184 24 18 chrX 131257444 131257944 -45716196 - LTR53 LTR ERVL 0 519 17 274 244 92 7 chrX 131257950 131258096 -45716044 - L1M4 LINE L1 -2027 4119 3951 187 152 43 0 chrX 131258098 131258144 -45715996 + CT-rich Low_complexity Low_complexity 4 51 0 1574 209 199 16 chrX 131258145 131258313 -45715827 - L1M4 LINE L1 -2200 3946 3810 936 139 148 56 chrX 131258313 131258529 -45715611 + MER46A DNA MER2_type 1 236 0 1574 209 199 16 chrX 131258529 131259119 -45715021 - L1M4 LINE L1 -2336 3810 3049 241 349 71 0 chrX 131259252 131259378 -45714762 + L2 LINE L2 2431 2565 -749 800 185 7 0 chrX 131259426 131259561 -45714579 - AluJo SINE Alu -176 136 1 243 159 23 0 chrX 131259710 131259754 -45714386 + MER72 LTR ERV1 585 629 -93 273 317 29 10 chrX 131259773 131259877 -45714263 + L2 LINE L2 2743 2848 -466 1931 104 90 0 chrX 131259877 131260145 -45713995 + AluSg SINE Alu 1 292 -18 1361 165 27 108 chrX 131260403 131260736 -45713404 + AluYb8 SINE Alu 1 306 -12 219 150 0 0 chrX 131260809 131260849 -45713291 + (T)n Simple_repeat Simple_repeat 1 40 0 290 377 34 0 chrX 131260851 131260997 -45713143 + L2 LINE L2 2809 2959 -313 1173 182 5 0 chrX 131261005 131261214 -45712926 - MLT1A1 LTR MaLR 0 365 156 1369 270 82 30 chrX 131261240 131261316 -45712824 - L2 LINE L2 -90 3223 3152 1759 150 48 17 chrX 131261316 131261609 -45712531 + AluJo SINE Alu 1 302 -10 1369 270 82 30 chrX 131261609 131262231 -45711909 - L2 LINE L2 -161 3152 2481 1992 115 50 4 chrX 131262231 131262509 -45711631 - AluSc SINE Alu -18 291 1 326 337 45 11 chrX 131262544 131262633 -45711507 + L2 LINE L2 3153 3244 -28 982 200 22 9 chrX 131262680 131262910 -45711230 - L1MA6 LINE L1 -1 6299 6067 2445 70 0 0 chrX 131263013 131263312 -45710828 + AluSx SINE Alu 1 299 -13 1892 166 3 25 chrX 131263329 131263648 -45710492 - AluJb SINE Alu 0 312 1 642 246 161 20 chrX 131263815 131264014 -45710126 - MIR SINE MIR 0 262 36 199 345 88 38 chrX 131264106 131264445 -45709695 + L2 LINE L2 714 1069 -2245 * 527 316 124 16 chrX 131264405 131264598 -45709542 - MIR SINE MIR 0 262 49 588 343 78 15 chrX 131264762 131265223 -45708917 - L2 LINE L2 -704 2610 2121 2472 58 0 13 chrX 131265513 131265821 -45708319 - AluY SINE Alu -7 304 1 2032 169 0 6 chrX 131265958 131266272 -45707868 + AluJb SINE Alu 1 312 0 959 176 0 7 chrX 131266274 131266427 -45707713 + AluJo/FRAM SINE Alu 130 281 -31 23 0 0 0 chrX 131266427 131266450 -45707690 + AT_rich Low_complexity Low_complexity 1 23 0 2331 88 3 0 chrX 131266903 131267198 -45706942 - AluSp SINE Alu -17 296 1 2069 222 68 95 chrX 131267353 131268156 -45705984 - MER21B LTR ERV1 -58 805 24 1029 107 14 0 chrX 131268274 131268414 -45705726 + AluSg/x SINE Alu 168 309 0 267 313 83 10 chrX 131268747 131268843 -45705297 + L2 LINE L2 3170 3272 0 28 29 0 0 chrX 131268923 131268958 -45705182 + AT_rich Low_complexity Low_complexity 1 35 0 1591 128 0 0 chrX 131269327 131269545 -45704595 - AluSg/x SINE Alu -30 282 65 723 104 0 0 chrX 131269545 131269641 -45704499 - AluS SINE Alu -217 96 1 2346 103 0 0 chrX 131270394 131270695 -45703445 + AluSx SINE Alu 1 301 -11 1034 153 12 0 chrX 131270695 131270865 -45703275 + AluSg/x SINE Alu 132 303 -7 1525 153 58 18 chrX 131272171 131272446 -45701694 + AluJo SINE Alu 14 299 -13 890 107 0 80 chrX 131273592 131273742 -45700398 - AluSq/x SINE Alu -174 138 1 227 363 62 28 chrX 131275138 131275317 -45698823 + L2 LINE L2 2842 3026 -246 22 0 0 0 chrX 131275628 131275650 -45698490 + AT_rich Low_complexity Low_complexity 1 22 0 546 350 184 15 chrX 131275909 131276647 -45697493 - L2 LINE L2 -343 2971 2109 1264 124 0 0 chrX 131276985 131277154 -45696986 - AluSg/x SINE Alu -3 307 139 1877 112 3 18 chrX 131277156 131277499 -45696641 + AluSx SINE Alu 1 339 0 330 254 0 0 chrX 131277499 131277570 -45696570 + MER112 DNA MER1_type 188 258 -2 38 0 0 0 chrX 131278696 131278734 -45695406 + AT_rich Low_complexity Low_complexity 1 38 0 24 67 0 0 chrX 131279252 131279297 -45694843 + AT_rich Low_complexity Low_complexity 1 45 0 772 287 93 14 chrX 131279503 131279967 -45694173 - MLT1G1 LTR MaLR 0 595 86 383 366 67 54 chrX 131280151 131280599 -45693541 + L2 LINE L2 2242 2695 -619 1383 194 58 24 chrX 131280600 131280893 -45693247 - AluJo SINE Alu -9 303 1 186 219 0 0 chrX 131281400 131281464 -45692676 + (TA)n Simple_repeat Simple_repeat 1 64 0 2339 79 3 0 chrX 131281742 131282033 -45692107 - AluSp SINE Alu -21 292 1 211 300 25 12 chrX 131282132 131282212 -45691928 - L2 LINE L2 -313 2959 2879 285 197 0 0 chrX 131282261 131282322 -45691818 + CT-rich Low_complexity Low_complexity 2 62 0 370 291 165 0 chrX 131285292 131285419 -45688721 - L2 LINE L2 -422 2892 2745 21 57 0 0 chrX 131285830 131285865 -45688275 + AT_rich Low_complexity Low_complexity 1 35 0 1948 146 3 3 chrX 131286148 131286442 -45687698 + AluJo SINE Alu 14 307 -5 2462 49 3 13 chrX 131287755 131288059 -45686081 - AluY SINE Alu -10 301 1 764 184 0 0 chrX 131289729 131289854 -45684286 + FLAM_C SINE Alu 2 126 -7 2486 96 0 0 chrX 131292486 131292798 -45681342 - AluSx SINE Alu 0 312 1 191 372 138 0 chrX 131292826 131292920 -45681220 - L3 LINE CR1 -12 1565 1459 725 260 78 0 chrX 131292957 131293149 -45680991 - L3 LINE CR1 -206 1371 1165 1810 174 37 0 chrX 131294184 131294483 -45679657 + AluJb SINE Alu 1 310 -2 746 177 0 8 chrX 131294738 131294862 -45679278 - FLAM_C SINE Alu -16 127 5 32 67 0 0 chrX 131295123 131295183 -45678957 + AT_rich Low_complexity Low_complexity 1 60 0 495 288 116 5 chrX 131295296 131295494 -45678646 - MIR SINE MIR -18 244 25 21 0 0 0 chrX 131295773 131295794 -45678346 + AT_rich Low_complexity Low_complexity 1 21 0 2137 110 3 13 chrX 131295951 131296252 -45677888 + AluSx SINE Alu 1 298 -14 480 278 78 64 chrX 131297330 131297611 -45676529 - L2 LINE L2 0 3313 3029 200 109 0 65 chrX 131299069 131299115 -45675025 + (TAAAA)n Simple_repeat Simple_repeat 1 43 0 439 283 27 58 chrX 131299123 131299381 -45674759 + MARNA DNA Mariner 270 519 -67 23 0 0 53 chrX 131299734 131299755 -45674385 + AT_rich Low_complexity Low_complexity 1 21 -15 1618 174 32 3 chrX 131299755 131300037 -45674103 + AluJb SINE Alu 1 290 -22 23 0 0 53 chrX 131300037 131300053 -45674087 + AT_rich Low_complexity Low_complexity 21 36 0 198 0 0 0 chrX 131300602 131300624 -45673516 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2856 175 98 47 chrX 131300858 131302040 -45672100 - L1MB2 LINE L1 -72 6099 4837 2128 152 36 11 chrX 131302040 131302396 -45671744 - MLT1A1 LTR MaLR 0 365 1 2856 175 98 47 chrX 131302396 131302553 -45671587 - L1MB2 LINE L1 -1334 4837 4689 2309 100 3 0 chrX 131302596 131302887 -45671253 + AluSx SINE Alu 1 292 -20 1000 196 49 36 chrX 131303134 131303358 -45670782 + MLT1F1 LTR MaLR 319 545 -22 317 231 22 11 chrX 131303399 131303490 -45670650 - Charlie1 DNA MER1_type -31 2730 2639 213 288 15 0 chrX 131304697 131304763 -45669377 + MER5A DNA MER1_type 123 189 0 339 164 33 0 chrX 131304941 131305002 -45669138 - MER5A DNA MER1_type -2 187 125 1038 148 0 13 chrX 131305002 131305157 -45668983 + AluSq SINE Alu 1 153 -160 763 118 22 30 chrX 131305222 131305357 -45668783 - MER5A DNA MER1_type -55 134 1 360 259 102 20 chrX 131305664 131305811 -45668329 + MIR3 SINE MIR 11 169 -39 2175 119 11 3 chrX 131306750 131307112 -45667028 + L1PA16 LINE L1 5428 5792 -364 297 269 34 34 chrX 131307169 131307344 -45666796 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 * 349 181 0 122 chrX 131307288 131307493 -45666647 + (TA)n Simple_repeat Simple_repeat 1 180 0 349 181 0 122 chrX 131307512 131307717 -45666423 + (TA)n Simple_repeat Simple_repeat 1 180 0 1494 196 25 48 chrX 131307741 131307759 -45666381 + L1PA16 LINE L1 5776 5793 -373 324 0 0 0 chrX 131307759 131307795 -45666345 + (CA)n Simple_repeat Simple_repeat 2 37 0 1494 196 25 48 chrX 131307795 131307832 -45666308 + L1PA16 LINE L1 5793 5829 -337 2168 108 7 10 chrX 131307832 131308127 -45666013 + AluSq SINE Alu 1 294 -19 1494 196 25 48 chrX 131308127 131308463 -45665677 + L1PA16 LINE L1 5829 6159 -7 213 277 0 0 chrX 131308922 131308969 -45665171 + CT-rich Low_complexity Low_complexity 1 47 0 338 288 31 16 chrX 131309700 131309834 -45664306 - MER5B DNA MER1_type -11 178 40 340 361 74 7 chrX 131310176 131310445 -45663695 + L2 LINE L2 2563 2849 -465 522 261 188 24 chrX 131311971 131312178 -45661962 + MIR SINE MIR 12 252 -10 201 216 0 0 chrX 131312441 131312478 -45661662 + L2 LINE L2 3235 3271 -1 329 346 42 25 chrX 131312552 131312792 -45661348 + L2 LINE L2 2869 3112 -160 195 342 38 13 chrX 131312822 131312901 -45661239 + L2 LINE L2 3188 3268 -4 690 256 27 54 chrX 131314566 131314789 -45659351 - MIR SINE MIR -12 250 34 1141 200 143 62 chrX 131314912 131315100 -45659040 + MLT1D LTR MaLR 12 183 -322 2143 127 3 3 chrX 131315100 131315400 -45658740 + AluSx SINE Alu 3 302 -10 1141 200 143 62 chrX 131315400 131315666 -45658474 + MLT1D LTR MaLR 183 503 -2 599 214 8 8 chrX 131317196 131317313 -45656827 - L2 LINE L2 -5 3308 3192 551 72 0 36 chrX 131317313 131317396 -45656744 - MADE1 DNA Mariner 0 80 1 1678 188 29 9 chrX 131317860 131318201 -45655939 - MER7A DNA MER2_type 0 346 1 313 382 0 8 chrX 131318201 131318324 -45655816 - MIR SINE MIR -108 154 33 183 369 60 12 chrX 131318869 131318953 -45655187 - L2 LINE L2 -51 3221 3134 1894 130 0 4 chrX 131319347 131319642 -45654498 + AluSx SINE Alu 22 315 0 888 202 56 0 chrX 131319768 131319946 -45654194 - MER58A DNA MER1_type 0 224 37 198 0 0 0 chrX 131319985 131320007 -45654133 + (T)n Simple_repeat Simple_repeat 1 22 0 251 53 0 26 chrX 131320216 131320254 -45653886 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 3078 69 64 9 chrX 131320276 131320657 -45653483 + MLT2A1 LTR ERVL 1 409 -35 432 0 0 0 chrX 131320657 131320705 -45653435 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 3078 69 64 9 chrX 131320705 131320744 -45653396 + MLT2A1 LTR ERVL 409 444 0 28497 162 13 18 chrX 131320745 131322588 -45651552 + ERVL-A1 LTR ERVL 2 1852 -3912 414 167 0 0 chrX 131322588 131322654 -45651486 - AluS SINE Alu -23 286 221 28497 162 13 18 chrX 131322654 131325788 -45648352 + ERVL-A1 LTR ERVL 1852 5020 -744 1024 154 0 46 chrX 131325788 131325963 -45648177 - AluSq SINE Alu -146 167 1 207 306 0 0 chrX 131326118 131326167 -45647973 + L2 LINE L2 3008 3056 -216 540 296 66 55 chrX 131326169 131326548 -45647592 + L2 LINE L2 2229 2611 -703 410 281 123 17 chrX 131326791 131327026 -45647114 + MLT1H LTR MaLR 1 260 -289 860 123 0 0 chrX 131330849 131330971 -45643169 + FLAM_C SINE Alu 3 124 -9 867 218 6 6 chrX 131331438 131331617 -45642523 - FRAM SINE Alu -4 172 1 310 281 71 43 chrX 131332046 131332224 -45641916 + MIR SINE MIR 17 197 -65 593 205 41 72 chrX 131333392 131333523 -45640617 + MER5A DNA MER1_type 1 126 -63 2199 111 7 0 chrX 131333523 131333812 -45640328 - AluSx SINE Alu -21 291 1 593 205 41 72 chrX 131333812 131333875 -45640265 + MER5A DNA MER1_type 126 189 0 1833 164 30 0 chrX 131334803 131335101 -45639039 + AluJb SINE Alu 1 307 -5 22 0 0 0 chrX 131335453 131335475 -45638665 + AT_rich Low_complexity Low_complexity 1 22 0 * 613 153 41 20 chrX 131335468 131335566 -45638574 - FLAM_A SINE Alu -22 120 21 21 36 0 0 chrX 131335575 131335603 -45638537 + AT_rich Low_complexity Low_complexity 1 28 0 2465 66 0 3 chrX 131335612 131335913 -45638227 + AluY SINE Alu 1 300 -11 22 56 0 0 chrX 131336036 131336072 -45638068 + AT_rich Low_complexity Low_complexity 1 36 0 2155 117 3 0 chrX 131336392 131336682 -45637458 - AluSq SINE Alu -22 291 1 572 314 51 64 chrX 131337446 131337918 -45636222 + MLT1K LTR MaLR 121 586 -2 2644 113 8 4 chrX 131338027 131338403 -45635737 - THE1C LTR MaLR 0 426 1 1997 231 84 23 chrX 131338516 131339028 -45635112 - MLT1E LTR MaLR 0 593 51 351 275 120 0 chrX 131340892 131341034 -45633106 - L1ME4a LINE L1 -209 5912 5754 428 240 144 34 chrX 131341126 131341272 -45632868 + MLT1K LTR MaLR 108 269 -319 1709 112 58 14 chrX 131341391 131341669 -45632471 + THE1C LTR MaLR 1 290 -85 1171 86 0 0 chrX 131341669 131341821 -45632319 + THE1-int LTR MaLR 460 611 -969 291 263 88 35 chrX 131341894 131342008 -45632132 + MLT1K LTR MaLR 467 586 -2 248 310 35 0 chrX 131342023 131342110 -45632030 + L3 LINE CR1 1187 1276 -301 1059 199 78 4 chrX 131342111 131342367 -45631773 + L1MA4 LINE L1 6024 6298 -2 278 302 101 20 chrX 131342387 131342536 -45631604 + L3 LINE CR1 1271 1431 -146 307 196 36 71 chrX 131342802 131342914 -45631226 + L1M4 LINE L1 3798 3905 -2241 410 283 73 53 chrX 131342925 131343461 -45630679 - L1MDb LINE L1 -4969 1573 1016 447 317 200 5 chrX 131344204 131344409 -45629731 - MIR SINE MIR -13 249 5 498 317 27 11 chrX 131345224 131345407 -45628733 - MIR3 SINE MIR -4 204 19 2006 133 14 7 chrX 131346333 131346626 -45627514 + AluSx SINE Alu 1 295 -17 704 278 48 5 chrX 131346708 131346895 -45627245 + MER63A DNA MER1_type 16 210 0 471 279 50 34 chrX 131347437 131347700 -45626440 + L1ME4a LINE L1 5678 5947 -208 180 179 0 0 chrX 131348568 131348607 -45625533 + (TAA)n Simple_repeat Simple_repeat 2 40 0 193 407 56 6 chrX 131348666 131348828 -45625312 + MIR SINE MIR 20 189 -73 191 283 19 0 chrX 131348835 131348888 -45625252 - L2 LINE L2 -5 3267 3214 15737 28 0 3 chrX 131349140 131351372 -45622768 + L1P2 LINE L1 3563 5787 -368 34677 46 8 2 chrX 131351377 131355649 -45618491 + L1P LINE L1 9 4305 -1841 825 146 8 0 chrX 131355804 131355927 -45618213 - FLAM_C SINE Alu -19 124 1 2320 103 3 3 chrX 131356153 131356464 -45617676 - AluSx SINE Alu -1 311 1 2495 61 0 19 chrX 131356916 131357226 -45616914 + AluY SINE Alu 1 304 -7 4166 61 10 0 chrX 131357299 131357810 -45616330 - L1PA7 LINE L1 -20 6134 5619 364 296 189 0 chrX 131357836 131358005 -45616135 - MIR SINE MIR -35 227 27 518 248 66 0 chrX 131358379 131358500 -45615640 - MER94 DNA DNA -5 129 1 190 368 58 26 chrX 131358847 131359002 -45615138 - L2 LINE L2 -962 2352 2193 210 292 0 15 chrX 131359694 131359759 -45614381 + CT-rich Low_complexity Low_complexity 3 66 0 21 0 0 0 chrX 131360274 131360295 -45613845 + AT_rich Low_complexity Low_complexity 1 21 0 1323 198 143 62 chrX 131361811 131362077 -45612063 - MLT1D LTR MaLR -2 503 260 2131 127 3 3 chrX 131362077 131362377 -45611763 - AluSx SINE Alu -10 302 3 1323 198 143 62 chrX 131362377 131362565 -45611575 - MLT1D LTR MaLR -245 260 12 679 256 27 54 chrX 131362688 131362911 -45611229 + MIR SINE MIR 34 250 -12 5598 26 0 0 chrX 131363071 131363682 -45610458 + L1PA3 LINE L1 5545 6155 0 3397 39 0 0 chrX 131363682 131364063 -45610077 + L1PA4 LINE L1 5770 6152 -3 341 257 62 18 chrX 131364305 131364418 -45609722 - MIR SINE MIR -97 165 48 414 0 0 0 chrX 131365382 131365428 -45608712 + (TG)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chrX 131365729 131365758 -45608382 + AT_rich Low_complexity Low_complexity 1 29 0 1384 257 68 41 chrX 131366383 131366939 -45607201 - MLT1F1 LTR MaLR 0 567 1 320 309 6 0 chrX 131367491 131367588 -45606552 + MIR SINE MIR 72 172 -36 259 241 81 23 chrX 131368238 131368325 -45605815 + MIR SINE MIR 164 255 -7 243 297 34 40 chrX 131368590 131368738 -45605402 - MER103 DNA DNA -2 164 18 249 366 23 23 chrX 131368756 131368887 -45605253 + L2 LINE L2 2667 2797 -517 374 36 36 0 chrX 131369014 131369069 -45605071 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 1110 122 28 6 chrX 131369079 131369259 -45604881 - AluSg/x SINE Alu -22 287 104 310 246 53 53 chrX 131369867 131369981 -45604159 + MIR SINE MIR 148 261 -1 2839 7 0 7 chrX 131370081 131370390 -45603750 - AluYb8 SINE Alu -11 307 1 331 104 35 35 chrX 131370523 131370638 -45603502 + (TA)n Simple_repeat Simple_repeat 2 116 0 22 88 0 0 chrX 131370662 131370719 -45603421 + AT_rich Low_complexity Low_complexity 1 57 0 245 404 43 0 chrX 131371223 131371411 -45602729 + L2 LINE L2 2563 2758 -556 21 0 0 0 chrX 131371662 131371683 -45602457 + AT_rich Low_complexity Low_complexity 1 21 0 2615 110 0 0 chrX 131371685 131372021 -45602119 + L1PA15 LINE L1 5820 6155 -10 849 178 7 13 chrX 131372040 131372192 -45601948 - L1PB4 LINE L1 -13 6143 5993 2037 150 3 3 chrX 131372389 131372696 -45601444 - AluSx SINE Alu -5 307 1 1160 144 0 0 chrX 131372860 131373034 -45601106 - AluSg/x SINE Alu -3 309 136 332 75 0 19 chrX 131373558 131373611 -45600529 + (TA)n Simple_repeat Simple_repeat 2 53 0 27 29 0 0 chrX 131374793 131374827 -45599313 + AT_rich Low_complexity Low_complexity 1 34 0 1984 139 10 3 chrX 131374827 131375121 -45599019 - AluSx SINE Alu -16 296 1 25 51 0 0 chrX 131375277 131375316 -45598824 + AT_rich Low_complexity Low_complexity 1 39 0 2368 98 0 22 chrX 131375450 131375767 -45598373 - AluSg SINE Alu 0 310 1 282 146 14 97 chrX 131376263 131376407 -45597733 + (TTTA)n Simple_repeat Simple_repeat 3 134 0 2289 98 0 20 chrX 131376718 131377023 -45597117 - AluSx SINE Alu -13 299 1 771 249 93 19 chrX 131377869 131378074 -45596066 - MLT1J LTR MaLR -291 220 1 753 238 217 10 chrX 131378665 131378964 -45595176 - MLT1B LTR MaLR -16 374 14 1013 57 19 19 chrX 131379315 131379474 -45594666 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 237 65 0 0 chrX 131379778 131379809 -45594331 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2569 59 0 0 chrX 131380473 131380793 -45593347 + L1PA3 LINE L1 4357 4676 -1470 7974 38 0 0 chrX 131380794 131381869 -45592271 + L1PA3 LINE L1 5081 6155 0 3397 39 0 0 chrX 131381869 131382250 -45591890 + L1PA4 LINE L1 5770 6152 -3 341 257 62 18 chrX 131382492 131382605 -45591535 - MIR SINE MIR -97 165 48 202 189 0 0 chrX 131383044 131383081 -45591059 + C-rich Low_complexity Low_complexity 1 37 0 198 209 12 35 chrX 131383088 131383174 -45590966 + CT-rich Low_complexity Low_complexity 3 86 0 997 198 24 68 chrX 131383388 131383640 -45590500 + ERVL LTR ERVL 4673 4913 -851 1476 231 77 23 chrX 131383656 131384045 -45590095 - MER21B LTR ERV1 -51 812 403 2380 181 44 7 chrX 131384058 131384488 -45589652 - LTR3b LTR ERVK -49 451 6 1896 111 0 0 chrX 131384644 131384896 -45589244 + AluY SINE Alu 52 303 -8 23 78 0 0 chrX 131384968 131385019 -45589121 + AT_rich Low_complexity Low_complexity 1 51 0 214 216 45 11 chrX 131385031 131385119 -45589021 + (TA)n Simple_repeat Simple_repeat 2 92 0 481 308 26 6 chrX 131385189 131385345 -45588795 - MIR SINE MIR -65 197 39 672 165 23 40 chrX 131385444 131385615 -45588525 - THE1C LTR MaLR -1 374 197 1664 201 0 3 chrX 131586458 131586767 -45387373 - AluJb SINE Alu -4 308 1 231 88 0 0 chrX 131587071 131587105 -45387035 - L1PA16 LINE L1 -175 5991 5958 1403 82 6 0 chrX 131588173 131588344 -45385796 + AluSq SINE Alu 3 174 -139 22 35 0 0 chrX 131589239 131589268 -45384872 + AT_rich Low_complexity Low_complexity 1 29 0 2202 89 36 0 chrX 131589312 131589614 -45384526 - AluSq SINE Alu 0 313 1 2237 99 0 56 chrX 131590342 131590666 -45383474 - AluSg SINE Alu -2 308 3 1012 226 57 57 chrX 131591465 131591797 -45382343 - MER58B DNA MER1_type -1 340 9 208 151 55 27 chrX 131592919 131592992 -45381148 + (TA)n Simple_repeat Simple_repeat 1 75 0 224 190 38 25 chrX 131593053 131593132 -45381008 + (TA)n Simple_repeat Simple_repeat 2 81 0 988 251 4 30 chrX 131593418 131593653 -45380487 - MIR SINE MIR -26 236 8 910 235 20 0 chrX 131594070 131594274 -45379866 - MER3 DNA MER1_type 0 209 2 205 383 46 5 chrX 131594296 131594492 -45379648 - L2 LINE L2 -1148 2166 1963 331 282 0 14 chrX 131595467 131595580 -45378560 + MIR SINE MIR 15 123 -85 201 271 0 51 chrX 131596220 131596279 -45377861 + L2 LINE L2 3202 3257 -15 397 258 230 32 chrX 131596357 131596574 -45377566 - MIR3 SINE MIR 0 262 3 582 350 42 4 chrX 131598218 131598455 -45375685 + MIR SINE MIR 3 248 -14 2088 133 55 45 chrX 131600034 131600416 -45373724 - MLT1B LTR MaLR -4 386 1 364 347 16 0 chrX 131600949 131601070 -45373070 - L2 LINE L2 0 3313 3191 2908 183 9 33 chrX 131601127 131601679 -45372461 - MER68 LTR ERV1 0 562 24 297 289 202 0 chrX 131601872 131601976 -45372164 - L2 LINE L2 0 3313 3189 196 224 12 129 chrX 131603055 131603140 -45371000 + L2 LINE L2 3235 3309 -4 183 258 76 15 chrX 131603534 131603600 -45370540 + L2 LINE L2 3150 3219 -53 2229 108 3 0 chrX 131603789 131604086 -45370054 - AluSx SINE Alu -14 298 1 198 146 49 171 chrX 131604123 131604205 -45369935 + L2 LINE L2 3242 3313 0 * 434 276 39 26 chrX 131604204 131604360 -45369780 + MIR SINE MIR 49 206 -56 706 315 63 46 chrX 131605037 131605497 -45368643 + L2 LINE L2 1812 2279 -1035 332 149 35 46 chrX 131605712 131605799 -45368341 + L1PA16 LINE L1 6059 6144 -22 5770 228 20 13 chrX 131605982 131607731 -45366409 + L1PA13 LINE L1 1170 2972 -3825 197 65 32 0 chrX 131607731 131607762 -45366378 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 5770 228 20 13 chrX 131607762 131607909 -45366231 + L1PA13 LINE L1 2972 3116 -3681 369 88 0 0 chrX 131607948 131608005 -45366135 + L1P LINE L1 2395 2451 -3695 1602 133 0 0 chrX 131608032 131608273 -45365867 + L1PA15 LINE L1 5918 6158 -7 3646 225 22 2 chrX 131608281 131609109 -45365031 + L1MB7 LINE L1 5318 6161 -23 383 209 27 68 chrX 131609163 131609311 -45364829 - Charlie7 DNA MER1_type -6 2606 2465 447 302 249 4 chrX 131609397 131609662 -45364478 - L2 LINE L2 -679 2635 2306 767 302 93 22 chrX 131609671 131609926 -45364214 - L2 LINE L2 -1151 2163 1873 2281 121 0 0 chrX 131609926 131610231 -45363909 + AluSx SINE Alu 1 305 -7 767 302 93 22 chrX 131610231 131610339 -45363801 - L2 LINE L2 -1441 1873 1774 831 191 12 0 chrX 131610360 131610522 -45363618 - L1M4 LINE L1 -2310 3836 3673 790 124 7 29 chrX 131610519 131610656 -45363484 - L1M3 LINE L1 -571 5597 5464 * 1465 165 54 111 chrX 131610657 131611044 -45363096 + MLT1A1 LTR MaLR 1 365 0 1274 207 66 117 chrX 131611111 131611286 -45362854 + MLT1F1 LTR MaLR 10 192 -375 2083 144 3 6 chrX 131611286 131611599 -45362541 - AluSx SINE Alu 0 312 1 1274 207 66 117 chrX 131611599 131612010 -45362130 + MLT1F1 LTR MaLR 192 565 -2 482 261 239 13 chrX 131612027 131612333 -45361807 - L2 LINE L2 -1578 1736 1362 2398 78 0 0 chrX 131612429 131612724 -45361416 + AluSg SINE Alu 1 295 -15 381 255 54 11 chrX 131613988 131614217 -45359923 + MLT1I LTR MaLR 1 264 -145 576 337 177 39 chrX 131614690 131614891 -45359249 + L1ME LINE L1 3373 3545 -2601 2595 113 0 0 chrX 131614891 131615246 -45358894 - THE1A LTR MaLR 0 355 1 576 337 177 39 chrX 131615246 131615609 -45358531 + L1ME LINE L1 3545 4041 -2105 2231 101 0 0 chrX 131615609 131615906 -45358234 - AluSq SINE Alu -16 297 1 576 337 177 39 chrX 131615906 131615989 -45358151 + L1ME LINE L1 4041 4111 -2035 21 57 0 0 chrX 131616478 131616513 -45357627 + AT_rich Low_complexity Low_complexity 1 35 0 606 264 137 46 chrX 131616644 131617227 -45356913 + L1ME LINE L1 4117 4752 -1394 272 243 143 43 chrX 131617239 131617519 -45356621 + L1ME LINE L1 4891 5198 -948 305 263 81 10 chrX 131617575 131617674 -45356466 - MER20B DNA MER1_type 0 783 678 338 270 0 0 chrX 131617674 131617763 -45356377 + L1 LINE L1 2387 2475 -3671 9767 184 31 42 chrX 131617874 131620215 -45353925 + L1 LINE L1 2387 4701 -1445 303 240 158 53 chrX 131620408 131620654 -45353486 + L1ME LINE L1 5566 5837 -284 344 246 30 168 chrX 131620951 131621154 -45352986 + MER5B DNA MER1_type 1 175 -3 703 296 123 86 chrX 131621417 131622102 -45352038 + L3 LINE CR1 861 1570 -7 186 71 0 0 chrX 131622281 131622309 -45351831 + (TTTAG)n Simple_repeat Simple_repeat 3 30 0 945 242 199 51 chrX 131622387 131622916 -45351224 + MLT1L LTR MaLR 1 607 -8 324 175 0 0 chrX 131623071 131623134 -45351006 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 436 315 16 49 chrX 131624114 131624298 -45349842 + MIR SINE MIR 35 212 -50 2312 88 3 0 chrX 131624555 131624850 -45349290 + AluSg SINE Alu 1 296 -14 193 396 9 0 chrX 131625685 131625791 -45348349 + MIR3 SINE MIR 77 183 -25 198 0 0 0 chrX 131626607 131626629 -45347511 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2219 105 3 13 chrX 131627026 131627339 -45346801 + AluSx SINE Alu 1 310 -2 24 0 0 0 chrX 131627506 131627530 -45346610 + AT_rich Low_complexity Low_complexity 1 24 0 344 218 32 24 chrX 131627538 131627662 -45346478 - L1ME4a LINE L1 -3 6118 5994 3036 123 2 0 chrX 131627683 131628140 -45346000 - L1PA13 LINE L1 -11 6152 5695 319 229 105 46 chrX 131628144 131628297 -45345843 + L1MEc LINE L1 693 854 -5542 2201 113 3 0 chrX 131628303 131628603 -45345537 + AluSx SINE Alu 1 301 -11 734 110 27 20 chrX 131628606 131628752 -45345388 + GA-rich Low_complexity Low_complexity 4 150 0 897 253 79 76 chrX 131628874 131629218 -45344922 - HAL1 LINE L1 -921 1586 1244 5636 71 16 0 chrX 131629218 131629955 -45344185 - L1PA10 LINE L1 -16 6152 5404 897 253 79 76 chrX 131629955 131630297 -45343843 - HAL1 LINE L1 -1263 1244 898 1288 271 74 18 chrX 131630621 131631172 -45342968 + L1MC4 LINE L1 7187 7900 -142 2502 265 61 28 chrX 131631240 131632562 -45341578 + L1MEc LINE L1 2084 3411 -2804 3002 74 45 2 chrX 131632594 131633015 -45341125 - HSMAR1 DNA Mariner -848 439 1 555 304 69 5 chrX 131633682 131633886 -45340254 - MIR SINE MIR -12 250 34 21 0 0 0 chrX 131634009 131634030 -45340110 + AT_rich Low_complexity Low_complexity 1 21 0 237 42 42 21 chrX 131634481 131634529 -45339611 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 25 51 0 0 chrX 131634535 131634574 -45339566 + AT_rich Low_complexity Low_complexity 1 39 0 194 380 0 0 chrX 131634885 131634956 -45339184 + L2 LINE L2 2286 2356 -958 2020 220 63 35 chrX 131635679 131636251 -45337889 + L1ME2 LINE L1 5431 6018 -146 448 222 19 43 chrX 131636331 131636493 -45337647 + L1MC5 LINE L1 7774 7931 -30 394 280 48 18 chrX 131636674 131636842 -45337298 + L1ME4a LINE L1 5946 6118 -3 295 328 86 17 chrX 131637606 131637722 -45336418 + L2 LINE L2 3137 3260 -12 462 307 29 7 chrX 131637783 131637920 -45336220 - L2 LINE L2 -16 3297 3158 973 350 12 16 chrX 131638698 131639126 -45335014 + L3 LINE CR1 460 885 -692 31 26 0 0 chrX 131639986 131640024 -45334116 + AT_rich Low_complexity Low_complexity 1 38 0 753 309 99 57 chrX 131640024 131640548 -45333592 + L3 LINE CR1 1015 1560 -17 215 302 0 0 chrX 131640588 131640651 -45333489 + L2 LINE L2 2477 2539 -775 1036 227 75 117 chrX 131640741 131641305 -45332835 + MLT1H LTR MaLR 8 547 -2 965 276 82 38 chrX 131641948 131642423 -45331717 + Charlie7 DNA MER1_type 83 578 -2034 536 272 71 8 chrX 131642462 131642701 -45331439 + Charlie7 DNA MER1_type 769 1022 -1590 834 207 55 108 chrX 131642709 131643052 -45331088 + L1ME1 LINE L1 5837 6161 -5 30 27 0 0 chrX 131643053 131643090 -45331050 + AT_rich Low_complexity Low_complexity 1 37 0 203 250 48 77 chrX 131643105 131643209 -45330931 - L2 LINE L2 -41 3272 3172 414 328 28 22 chrX 131645301 131645481 -45328659 - MIR SINE MIR -50 212 32 317 346 50 13 chrX 131647543 131647702 -45326438 - L2 LINE L2 -571 2743 2579 1203 157 108 31 chrX 131647856 131648142 -45325998 - THE1C LTR MaLR -67 308 1 325 215 65 11 chrX 131648142 131648234 -45325906 - MER103 DNA DNA -28 138 42 401 242 125 8 chrX 131649001 131649129 -45325011 - MLT1-int LTR MaLR -1228 143 1 543 56 0 0 chrX 131649855 131649926 -45324214 + (CA)n Simple_repeat Simple_repeat 1 71 0 264 77 0 0 chrX 131650762 131650801 -45323339 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 131651736 131651758 -45322382 + AT_rich Low_complexity Low_complexity 1 22 0 3154 152 67 38 chrX 131651758 131651980 -45322160 - L1MA9 LINE L1 -299 6077 5863 464 27 54 0 chrX 131651980 131652054 -45322086 + (TA)n Simple_repeat Simple_repeat 2 79 0 3154 152 67 38 chrX 131652054 131652655 -45321485 - L1MA9 LINE L1 -513 5863 5229 735 148 0 18 chrX 131652658 131652915 -45321225 - AluJb SINE Alu -11 301 1 3648 198 35 21 chrX 131652917 131653704 -45320436 - L1MA9 LINE L1 -980 5230 4426 2178 101 0 14 chrX 131653704 131654019 -45320121 - AluSx SINE Alu 0 311 1 3648 198 35 21 chrX 131654019 131654104 -45320036 - L1MA9 LINE L1 -1784 4426 4344 1456 160 7 0 chrX 131654092 131654361 -45319779 + L1 LINE L1 3537 3807 -2339 * 1508 169 82 5 chrX 131654381 131654749 -45319391 + L1 LINE L1 4280 4675 -1471 8283 210 34 16 chrX 131654755 131657017 -45317123 - L1MA9 LINE L1 -1850 4360 2057 6390 86 46 5 chrX 131657021 131657998 -45316142 - L1PA10 LINE L1 -4 6164 5178 1031 66 7 0 chrX 131658005 131658141 -45315999 - L1PA7 LINE L1 -1 6153 6017 1869 243 57 20 chrX 131658149 131658234 -45315906 - L1MA9 LINE L1 -4761 1380 1300 243 0 0 0 chrX 131658234 131658261 -45315879 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1869 243 57 20 chrX 131658261 131659157 -45314983 - L1MA9 LINE L1 -4841 1300 313 290 56 0 0 chrX 131660729 131660765 -45313375 + U2 snRNA snRNA 1 36 -152 187 319 43 0 chrX 131662086 131662155 -45311985 + MIR SINE MIR 188 259 -3 533 267 0 75 chrX 131662366 131662512 -45311628 + L2 LINE L2 3138 3272 0 29 47 0 0 chrX 131662714 131662757 -45311383 + AT_rich Low_complexity Low_complexity 1 43 0 210 250 36 107 chrX 131663145 131663229 -45310911 - L2 LINE L2 -95 3177 3100 318 26 0 0 chrX 131663684 131663723 -45310417 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2175 115 0 0 chrX 131663723 131664009 -45310131 - AluSx SINE Alu -26 286 1 612 203 23 0 chrX 131664261 131664389 -45309751 - MIR SINE MIR -55 207 77 180 277 0 21 chrX 131664383 131664430 -45309710 + MIR SINE MIR 37 82 -180 * 203 89 122 78 chrX 131664970 131665060 -45309080 + (TTTAA)n Simple_repeat Simple_repeat 5 98 0 992 295 94 15 chrX 131665992 131666528 -45307612 - L2 LINE L2 -39 3274 2699 1614 114 4 4 chrX 131667585 131667848 -45306292 + L1MA5 LINE L1 6033 6295 -5 193 204 0 23 chrX 131668478 131668522 -45305618 + L2 LINE L2 3271 3313 0 286 315 121 13 chrX 131670023 131670172 -45303968 - L2 LINE L2 -427 2887 2723 22 0 0 0 chrX 131670817 131670839 -45303301 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chrX 131671223 131671248 -45302892 + (T)n Simple_repeat Simple_repeat 1 25 0 210 171 0 0 chrX 131673334 131673369 -45300771 + L2 LINE L2 3219 3253 -19 2342 95 0 7 chrX 131673888 131674194 -45299946 + AluSx SINE Alu 1 304 -8 258 160 0 0 chrX 131676212 131676262 -45297878 + CT-rich Low_complexity Low_complexity 1 50 0 185 339 0 15 chrX 131676508 131676573 -45297567 - L2 LINE L2 0 3313 3250 2139 100 0 10 chrX 131678460 131678749 -45295391 - AluY SINE Alu -15 296 11 251 320 88 72 chrX 131679820 131680151 -45293989 - L2 LINE L2 -13 3259 2924 212 364 0 26 chrX 131680600 131680677 -45293463 + L2 LINE L2 3010 3084 -188 204 67 0 0 chrX 131681980 131682010 -45292130 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 5260 85 16 8 chrX 131683072 131683822 -45290318 - L1PB2 LINE L1 -7 6144 5389 973 107 5 102 chrX 131684090 131684277 -45289863 + AluY SINE Alu 135 303 -8 616 321 66 0 chrX 131684571 131684814 -45289326 + MIR SINE MIR 3 261 -1 28 0 0 0 chrX 131684919 131684947 -45289193 + AT_rich Low_complexity Low_complexity 1 28 0 858 112 41 18 chrX 131685259 131685428 -45288712 - L1MA8 LINE L1 -5 6286 6114 212 0 36 0 chrX 131685987 131686015 -45288125 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chrX 131686267 131686292 -45287848 + (T)n Simple_repeat Simple_repeat 1 25 0 427 293 9 0 chrX 131686898 131687014 -45287126 - L2 LINE L2 -6 3307 3191 1901 148 60 20 chrX 131687349 131687701 -45286439 + MER47A DNA MER2_type 1 366 0 21 36 0 0 chrX 131688334 131688362 -45285778 + AT_rich Low_complexity Low_complexity 1 28 0 337 177 39 131 chrX 131688536 131688572 -45285568 - MER103 DNA DNA -7 159 121 924 178 44 11 chrX 131688572 131688752 -45285388 - MER5A DNA MER1_type -3 186 1 1896 108 91 26 chrX 131688752 131689103 -45285037 - THE1C LTR MaLR -1 374 1 337 177 39 131 chrX 131689103 131689195 -45284945 - MER103 DNA DNA -43 123 42 401 242 125 8 chrX 131689962 131690090 -45284050 - MLT1B-int LTR MaLR -1228 143 1 507 60 0 0 chrX 131690816 131690883 -45283257 + (CA)n Simple_repeat Simple_repeat 1 67 0 264 77 0 0 chrX 131691719 131691758 -45282382 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chrX 131692693 131692715 -45281425 + AT_rich Low_complexity Low_complexity 1 22 0 3213 155 62 36 chrX 131692715 131692937 -45281203 - L1MA9 LINE L1 -299 6013 5798 486 28 42 0 chrX 131692937 131693009 -45281131 + (TA)n Simple_repeat Simple_repeat 2 76 0 3213 155 62 36 chrX 131693009 131693613 -45280527 - L1MA9 LINE L1 -514 5798 5165 735 148 0 18 chrX 131693616 131693873 -45280267 - AluJb SINE Alu -11 301 1 3648 198 35 21 chrX 131693875 131694662 -45279478 - L1MA9 LINE L1 -980 5166 4362 2178 101 0 14 chrX 131694662 131694977 -45279163 - AluSx SINE Alu 0 311 1 3648 198 35 21 chrX 131694977 131695062 -45279078 - L1MA9 LINE L1 -1784 4362 4280 1456 160 7 0 chrX 131695050 131695319 -45278821 + L1 LINE L1 3537 3807 -2339 * 1508 169 82 5 chrX 131695339 131695707 -45278433 + L1 LINE L1 4280 4675 -1471 6950 198 39 17 chrX 131695713 131697454 -45276686 - L1MA9 LINE L1 -1850 4296 2517 2088 133 55 45 chrX 131698526 131698908 -45275232 - MLT1B LTR MaLR -4 386 1 364 347 16 0 chrX 131699441 131699562 -45274578 - L2 LINE L2 0 3313 3191 2908 183 9 33 chrX 131699619 131700171 -45273969 - MER68 LTR ERV1 0 562 24 297 289 202 0 chrX 131700364 131700468 -45273672 - L2 LINE L2 0 3313 3189 207 224 12 129 chrX 131701547 131701632 -45272508 + L2 LINE L2 3235 3309 -4 183 258 76 15 chrX 131702026 131702092 -45272048 + L2 LINE L2 3150 3219 -53 2229 108 3 0 chrX 131702281 131702578 -45271562 - AluSx SINE Alu -14 298 1 198 146 49 171 chrX 131702615 131702697 -45271443 + L2 LINE L2 3242 3313 0 * 434 276 39 26 chrX 131702696 131702852 -45271288 + MIR SINE MIR 49 206 -56 706 315 63 46 chrX 131703528 131703988 -45270152 + L2 LINE L2 1812 2279 -1035 332 149 35 46 chrX 131704203 131704290 -45269850 + L1PA16 LINE L1 6059 6144 -22 425 394 40 19 chrX 131704528 131705048 -45269092 + L2 LINE L2 2416 2946 -368 214 291 39 118 chrX 131705054 131705257 -45268883 + L2 LINE L2 2887 3073 -199 453 36 0 0 chrX 131705345 131705400 -45268740 + (TG)n Simple_repeat Simple_repeat 2 56 0 484 300 26 102 chrX 131705471 131705784 -45268356 + L2 LINE L2 2973 3261 -11 570 136 48 0 chrX 131705863 131705966 -45268174 - L1MB1 LINE L1 0 6168 6061 1452 233 36 26 chrX 131706112 131706498 -45267642 - MLT1B LTR MaLR 0 390 1 670 303 17 21 chrX 131707903 131708141 -45265999 - MIR SINE MIR -24 238 2 330 322 76 66 chrX 131708710 131709014 -45265126 + L2 LINE L2 2966 3272 0 262 319 18 66 chrX 131709910 131710076 -45264064 + L2 LINE L2 3108 3265 -7 364 275 37 0 chrX 131710193 131710302 -45263838 - MIR SINE MIR -7 255 143 265 248 33 118 chrX 131710823 131710976 -45263164 + MIR SINE MIR 53 192 -70 3893 120 43 3 chrX 131711019 131711675 -45262465 - L1MC1 LINE L1 -5 6328 5647 234 0 0 0 chrX 131712207 131712233 -45261907 + (GA)n Simple_repeat Simple_repeat 2 27 0 345 335 98 73 chrX 131712480 131712796 -45261344 - L2 LINE L2 -72 3200 2877 827 224 23 6 chrX 131713834 131714008 -45260132 - MER45A DNA AcHobo 0 178 2 311 343 184 7 chrX 131717501 131717772 -45256368 - L3b LINE CR1 -148 1435 1117 186 143 0 0 chrX 131717979 131718014 -45256126 + (TA)n Simple_repeat Simple_repeat 1 35 0 374 202 11 45 chrX 131720563 131720652 -45253488 - L2 LINE L2 -1 3312 3227 411 280 77 36 chrX 131720970 131721138 -45253002 - MIR SINE MIR 0 262 88 278 275 214 30 chrX 131721712 131721843 -45252297 - MER5A DNA MER1_type 0 189 35 * 290 241 0 0 chrX 131721790 131721844 -45252296 + MER5A DNA MER1_type 114 167 -22 3282 243 23 8 chrX 131721964 131722833 -45251307 - L1ME2 LINE L1 0 6959 6078 2813 263 72 30 chrX 131722827 131724377 -45249763 - L1ME2 LINE L1 -2784 4157 2674 * 1355 59 0 0 chrX 131724377 131724546 -45249594 - L1PA5 LINE L1 -3 6151 5983 2813 263 72 30 chrX 131724546 131724999 -45249141 - L1ME2 LINE L1 -4267 2674 2242 284 0 28 0 chrX 131724999 131725035 -45249105 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2813 263 72 30 chrX 131725035 131725788 -45248352 - L1ME2 LINE L1 -4699 2242 1132 401 294 117 6 chrX 131727586 131727749 -45246391 + MIR SINE MIR 82 262 0 771 257 82 16 chrX 131727753 131727998 -45246142 + MIR SINE MIR 2 262 0 832 328 12 0 chrX 131728185 131728444 -45245696 - MIR SINE MIR 0 262 1 286 341 32 32 chrX 131728604 131728730 -45245410 - MIR3 SINE MIR -35 173 48 1760 158 28 16 chrX 131729694 131730017 -45244123 - L1MD3 LINE L1 -1 7994 7668 543 262 18 24 chrX 131730170 131730338 -45243802 + MER110 LTR ERV1 318 484 -7 542 311 0 83 chrX 131730359 131730600 -45243540 - L3 LINE CR1 -50 1527 1307 649 262 17 76 chrX 131730660 131730897 -45243243 + MIR SINE MIR 35 257 -5 942 291 5 5 chrX 131731609 131731832 -45242308 + MIR SINE MIR 34 256 -6 189 107 0 0 chrX 131731834 131731862 -45242278 + (TTA)n Simple_repeat Simple_repeat 2 29 0 193 128 43 0 chrX 131732877 131732924 -45241216 + (TA)n Simple_repeat Simple_repeat 1 49 0 355 216 110 173 chrX 131733013 131733268 -45240872 + L1MEd LINE L1 967 1205 -4914 504 316 119 5 chrX 131734226 131734390 -45239750 + MIR SINE MIR 18 214 -48 1142 172 14 10 chrX 131734390 131734599 -45239541 + MER6B DNA MER2_type 1 210 0 504 316 119 5 chrX 131734599 131734652 -45239488 + MIR SINE MIR 214 260 -2 222 215 123 15 chrX 131734659 131734724 -45239416 + L2 LINE L2 3201 3272 0 503 318 22 22 chrX 131735648 131735827 -45238313 + MIR SINE MIR 47 225 -37 1323 174 39 18 chrX 131736821 131737103 -45237037 + AluJo SINE Alu 13 300 -12 451 297 0 8 chrX 131737352 131737480 -45236660 - L3b LINE CR1 -161 1422 1296 1050 176 0 0 chrX 131738113 131738289 -45235851 - FRAM SINE Alu -1 175 1 509 269 14 21 chrX 131739364 131739505 -45234635 - MIR3 SINE MIR -48 160 21 228 135 0 0 chrX 131740045 131740082 -45234058 + (TG)n Simple_repeat Simple_repeat 2 38 0 2036 108 4 0 chrX 131740082 131740359 -45233781 - AluSq SINE Alu -35 278 1 243 0 0 0 chrX 131742898 131742925 -45231215 + (TGGGGG)n Simple_repeat Simple_repeat 2 28 0 228 272 10 29 chrX 131743214 131743317 -45230823 + C-rich Low_complexity Low_complexity 2 102 0 25 0 0 0 chrX 131745956 131745981 -45228159 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 0 chrX 131750561 131750592 -45223548 + AT_rich Low_complexity Low_complexity 1 31 0 2396 80 3 0 chrX 131750709 131751010 -45223130 + AluSp SINE Alu 1 302 -11 271 156 0 0 chrX 131752496 131752588 -45221552 - Alu SINE Alu 0 313 238 867 128 8 0 chrX 131752596 131752721 -45221419 - AluSq/x SINE Alu -186 127 2 318 372 15 7 chrX 131754070 131754207 -45219933 - L3 LINE CR1 -356 1221 1084 380 323 164 72 chrX 131754490 131755241 -45218899 - L2 LINE L2 -707 2607 1712 180 0 0 0 chrX 131755241 131755261 -45218879 + (GGGAA)n Simple_repeat Simple_repeat 4 23 0 380 323 164 72 chrX 131755261 131755654 -45218486 - L2 LINE L2 -1602 1712 1357 1283 130 13 48 chrX 131755720 131755951 -45218189 + MER58A DNA MER1_type 1 223 -1 581 308 22 8 chrX 131755966 131756141 -45217999 + MER5B DNA MER1_type 2 183 -6 22 0 0 0 chrX 131757657 131757679 -45216461 + AT_rich Low_complexity Low_complexity 1 22 0 343 262 41 41 chrX 131758018 131758190 -45215950 + L2 LINE L2 675 846 -2468 * 634 310 110 9 chrX 131758175 131758204 -45215936 + L2 LINE L2 2945 2970 -343 2063 166 43 11 chrX 131758204 131758643 -45215497 - L1MB7 LINE L1 0 6184 5732 634 310 110 9 chrX 131758643 131758939 -45215201 + L2 LINE L2 2970 3303 -10 1603 241 108 40 chrX 131759007 131759689 -45214451 - L1MC4 LINE L1 0 8042 7305 423 0 0 0 chrX 131759689 131759736 -45214404 + (TG)n Simple_repeat Simple_repeat 2 48 0 1603 241 108 40 chrX 131759736 131759787 -45214353 - L1MC4 LINE L1 -737 7305 7259 2269 68 0 77 chrX 131759947 131760284 -45213856 + AluY SINE Alu 1 311 0 270 81 0 0 chrX 131761985 131762022 -45212118 + (CA)n Simple_repeat Simple_repeat 2 38 0 6456 125 32 14 chrX 131766101 131766461 -45207679 - L1MA4 LINE L1 -5 6295 5943 2237 84 0 39 chrX 131766461 131766770 -45207370 + AluY SINE Alu 1 297 -14 6456 125 32 14 chrX 131766770 131767402 -45206738 - L1MA4 LINE L1 -357 5943 5279 216 0 0 0 chrX 131767402 131767426 -45206714 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 6456 125 32 14 chrX 131767426 131767751 -45206389 - L1MA4 LINE L1 -1021 5279 4961 22 0 0 0 chrX 131770587 131770609 -45203531 + AT_rich Low_complexity Low_complexity 1 22 0 234 153 0 0 chrX 131771284 131771343 -45202797 + (TG)n Simple_repeat Simple_repeat 2 60 0 201 74 0 0 chrX 131772245 131772272 -45201868 + (CA)n Simple_repeat Simple_repeat 1 27 0 13994 132 35 21 chrX 131772576 131773526 -45200614 + Tigger1 DNA MER2_type 1 937 -1481 2176 101 23 13 chrX 131773526 131773834 -45200306 - AluSx SINE Alu -1 311 1 13994 132 35 21 chrX 131773834 131775269 -45198871 + Tigger1 DNA MER2_type 937 2418 0 215 214 0 0 chrX 131775274 131775316 -45198824 + MIR SINE MIR 66 107 -155 1746 167 0 20 chrX 131775345 131775644 -45198496 + AluJo SINE Alu 1 293 -19 7422 24 0 2 chrX 131776346 131777535 -45196605 - L1PA3 LINE L1 -3 6152 5003 1952 148 39 24 chrX 131777844 131778176 -45195964 + MER1B DNA MER1_type 1 337 0 244 203 16 16 chrX 131779058 131779122 -45195018 + A-rich Low_complexity Low_complexity 1 64 0 23 54 0 0 chrX 131779157 131779194 -45194946 + AT_rich Low_complexity Low_complexity 1 37 0 1422 222 30 188 chrX 131779811 131781060 -45193080 + L2 LINE L2 644 1695 -1619 2692 157 30 2 chrX 131781062 131781488 -45192652 + LTR9B LTR ERV1 27 464 -180 3854 245 42 65 chrX 131781490 131783058 -45191082 + L2 LINE L2 1695 3242 -71 642 201 30 8 chrX 131783080 131783214 -45190926 + L2 LINE L2 3161 3297 -16 23 0 0 0 chrX 131783613 131783636 -45190504 + AT_rich Low_complexity Low_complexity 1 23 0 210 171 0 0 chrX 131783666 131783707 -45190433 + (ATGGTG)n Simple_repeat Simple_repeat 4 44 0 495 259 96 30 chrX 131784085 131784376 -45189764 - L1ME4a LINE L1 -159 5962 5656 238 332 116 54 chrX 131785508 131786291 -45187849 + L2 LINE L2 1589 2420 -894 775 257 53 29 chrX 131786369 131786614 -45187526 + MIR SINE MIR 12 262 0 319 205 213 39 chrX 131787259 131787386 -45186754 - L1ME4a LINE L1 0 6121 5973 258 116 0 0 chrX 131787408 131787451 -45186689 + (TC)n Simple_repeat Simple_repeat 2 44 0 442 140 39 45 chrX 131787489 131787668 -45186472 + (TA)n Simple_repeat Simple_repeat 2 179 0 459 263 40 76 chrX 131788043 131788250 -45185890 - MIR3 SINE MIR -64 198 2 22 56 0 0 chrX 131790096 131790132 -45184008 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chrX 131790143 131790165 -45183975 + (TC)n Simple_repeat Simple_repeat 1 22 0 2065 101 60 3 chrX 131793911 131794247 -45179893 + L1MA3 LINE L1 5942 6296 -9 25 31 0 0 chrX 131794248 131794280 -45179860 + AT_rich Low_complexity Low_complexity 1 32 0 5925 55 1 0 chrX 131794648 131795388 -45178752 - L1PA8 LINE L1 -12 6160 5420 669 217 0 0 chrX 131795415 131795535 -45178605 - FLAM_A SINE Alu -13 120 1 2790 96 0 3 chrX 131795560 131795946 -45178194 + L1PA10 LINE L1 5774 6158 -10 275 291 0 0 chrX 131797373 131797452 -45176688 - MER103 DNA DNA -45 121 43 222 167 200 0 chrX 131797664 131797724 -45176416 + MER5C DNA MER1_type 5 76 -248 252 232 36 18 chrX 131797826 131797882 -45176258 - MER5C DNA MER1_type -267 57 1 364 277 0 0 chrX 131797891 131797974 -45176166 + MER5B DNA MER1_type 2 84 -94 296 100 0 0 chrX 131798027 131798067 -45176073 + Tigger4(Zombi) DNA MER2_type 2691 2730 -1 241 256 22 56 chrX 131798189 131798279 -45175861 + MER5B DNA MER1_type 92 178 0 367 273 151 22 chrX 131799378 131799517 -45174623 - MIR SINE MIR -82 180 24 1241 123 0 0 chrX 131799950 131800137 -45174003 - MSTA LTR MaLR 0 428 242 333 0 0 0 chrX 131800458 131800495 -45173645 + (CA)n Simple_repeat Simple_repeat 2 38 0 274 207 184 0 chrX 131801137 131801224 -45172916 + MIR SINE MIR 158 260 -2 289 309 73 24 chrX 131801342 131801465 -45172675 - L2 LINE L2 -10 3262 3134 229 268 49 56 chrX 131801500 131801642 -45172498 - MLT1H LTR MaLR -27 522 382 22 56 0 0 chrX 131801718 131801754 -45172386 + AT_rich Low_complexity Low_complexity 1 36 0 214 196 0 43 chrX 131801754 131801800 -45172340 - L2 LINE L2 -9 3263 3220 343 287 209 19 chrX 131801819 131802077 -45172063 - L2 LINE L2 -1043 2271 1965 1218 179 33 0 chrX 131803839 131804051 -45170089 - MER20 DNA MER1_type 0 219 1 29 28 0 0 chrX 131804257 131804293 -45169847 + AT_rich Low_complexity Low_complexity 1 36 0 204 275 101 14 chrX 131804712 131804781 -45169359 - MIR SINE MIR -17 245 171 34 0 0 0 chrX 131805139 131805173 -45168967 + AT_rich Low_complexity Low_complexity 1 34 0 198 378 59 7 chrX 131805506 131805641 -45168499 - MIR SINE MIR -100 162 21 228 313 48 0 chrX 131806706 131806789 -45167351 - MIR SINE MIR -76 186 100 1502 233 30 38 chrX 131807328 131807727 -45166413 - MSTD LTR MaLR 0 396 1 936 189 118 9 chrX 131807727 131807955 -45166185 - MSTD-int LTR MaLR 0 1735 1483 7873 225 21 5 chrX 131807958 131809641 -45164499 + L1PA13 LINE L1 1 1710 -5871 19536 179 17 21 chrX 131809657 131815009 -45159131 + L1PA13 LINE L1 2270 7601 0 4901 240 52 57 chrX 131815035 131815950 -45158190 - MSTD-int LTR MaLR -235 1500 595 399 21 0 0 chrX 131815950 131815998 -45158142 + (CA)n Simple_repeat Simple_repeat 2 49 0 4901 240 52 57 chrX 131815998 131816589 -45157551 - MSTD-int LTR MaLR -1140 595 2 1066 250 12 79 chrX 131816591 131816662 -45157478 - MSTD LTR MaLR 0 396 322 2268 102 0 7 chrX 131816662 131816955 -45157185 + AluSx SINE Alu 1 291 -21 1066 250 12 79 chrX 131816955 131817065 -45157075 - MSTD LTR MaLR -74 322 206 2292 142 42 37 chrX 131817065 131817495 -45156645 - MSTB1 LTR MaLR 0 432 1 1066 250 12 79 chrX 131817495 131817732 -45156408 - MSTD LTR MaLR -190 206 5 211 158 26 0 chrX 131817818 131817856 -45156284 + L2 LINE L2 3267 3305 -8 2675 7 3 7 chrX 131818092 131818393 -45155747 - AluY SINE Alu -11 300 1 354 275 275 5 chrX 131818690 131818883 -45155257 + MIR SINE MIR 18 262 0 661 216 40 0 chrX 131820996 131821121 -45153019 - MIR SINE MIR -118 144 15 633 292 25 37 chrX 131821253 131821496 -45152644 - MIR SINE MIR -19 243 4 190 262 41 138 chrX 131822817 131822962 -45151178 + MIR SINE MIR 120 250 -12 2163 155 6 23 chrX 131823092 131823441 -45150699 - MER61A LTR ERV1 0 343 1 221 259 32 70 chrX 131823490 131823648 -45150492 + L2 LINE L2 2832 2983 -289 727 301 9 0 chrX 131824054 131824267 -45149873 + LTR33 LTR ERVL 298 512 -9 1629 186 35 3 chrX 131824935 131825311 -45148829 - Charlie5 DNA MER1_type 0 2624 2237 492 215 8 17 chrX 131825314 131825450 -45148690 - Charlie5 DNA MER1_type -2500 112 1 442 350 79 58 chrX 131825726 131826061 -45148079 + L2 LINE L2 2827 3174 -98 903 223 52 9 chrX 131826061 131826272 -45147868 + MER58A DNA MER1_type 1 220 -4 442 350 79 58 chrX 131826272 131826365 -45147775 + L2 LINE L2 3174 3264 -8 463 273 191 10 chrX 131827364 131827573 -45146567 - MIR SINE MIR -15 247 1 241 298 64 21 chrX 131827704 131827798 -45146342 - MIR SINE MIR -95 113 16 23 33 0 0 chrX 131827844 131827874 -45146266 + AT_rich Low_complexity Low_complexity 1 30 0 473 291 17 0 chrX 131828012 131828129 -45146011 + MIR3 SINE MIR 64 182 -26 426 20 0 0 chrX 131828135 131828186 -45145954 + (TG)n Simple_repeat Simple_repeat 1 51 0 519 313 16 55 chrX 131828233 131828489 -45145651 + L3 LINE CR1 1317 1562 -15 253 263 105 42 chrX 131828549 131828644 -45145496 - L2 LINE L2 -3 3269 3169 941 264 18 0 chrX 131828657 131828877 -45145263 + MER58A DNA MER1_type 1 224 0 1553 98 31 9 chrX 131829803 131830028 -45144112 + MER30 DNA MER1_type 1 230 0 274 157 0 0 chrX 131830058 131830109 -45144031 - L1MC4 LINE L1 0 8042 7992 1532 255 59 43 chrX 131830123 131830895 -45143245 - L1MC/D LINE L1 -749 5397 4951 688 11 0 22 chrX 131830895 131830985 -45143155 - L1PA2 LINE L1 0 6155 6068 1532 255 59 43 chrX 131830985 131831173 -45142967 - L1MC/D LINE L1 -1195 4951 4768 5384 152 25 4 chrX 131831202 131832326 -45141814 - L1MA8 LINE L1 0 6291 5141 361 285 67 0 chrX 131832434 131832613 -45141527 - L1MC/D LINE L1 -1487 4659 4469 411 341 109 35 chrX 131832767 131833078 -45141062 + L3 LINE CR1 620 953 -624 301 290 38 61 chrX 131833287 131833418 -45140722 - L2 LINE L2 -641 2673 2546 3883 67 52 19 chrX 131833418 131833956 -45140184 + L1PA8A LINE L1 5564 6119 -12 2325 143 49 4 chrX 131834272 131834725 -45139415 + L1MB8 LINE L1 5646 6118 -60 542 271 17 51 chrX 131834738 131834974 -45139166 - L2 LINE L2 -759 2555 2328 26024 55 2 1 chrX 131835074 131839388 -45134752 - L1PA5 LINE L1 -1 6869 2498 196 390 12 0 chrX 131840643 131840725 -45133415 - L2 LINE L2 -2 3270 3188 1021 144 29 6 chrX 131840818 131840991 -45133149 + L1MB1 LINE L1 5991 6167 -1 207 328 90 0 chrX 131843320 131843387 -45130753 - L3b LINE CR1 -24 1559 1487 387 323 155 32 chrX 131843493 131844060 -45130080 - L2 LINE L2 -665 2649 2013 29974 115 12 27 chrX 131844129 131850627 -45123513 + L1PA8 LINE L1 6 6487 0 209 359 16 0 chrX 131850829 131850893 -45123247 - L2 LINE L2 0 3272 3208 333 264 11 0 chrX 131850935 131851022 -45123118 - MER94 DNA DNA -36 98 11 488 256 101 41 chrX 131852746 131852965 -45121175 - MIR SINE MIR -6 256 25 1328 254 31 55 chrX 131853370 131853847 -45120293 - MLT1C LTR MaLR -1 466 1 292 257 35 46 chrX 131854066 131854213 -45119927 + MIR3 SINE MIR 5 149 -66 432 287 0 39 chrX 131854254 131854383 -45119757 + MIR SINE MIR 29 152 -110 1140 193 0 37 chrX 131855352 131855570 -45118570 + MER2 DNA MER2_type 1 210 -135 277 148 0 0 chrX 131855596 131855657 -45118483 - L1MA3 LINE L1 -2 6303 6243 366 308 0 0 chrX 131855674 131855765 -45118375 + MER2 DNA MER2_type 255 345 0 211 283 126 75 chrX 131855902 131856061 -45118079 - L2 LINE L2 -188 3084 2918 1202 216 72 14 chrX 131856265 131856556 -45117584 + MLT1A2 LTR MaLR 1 308 -66 265 178 22 0 chrX 131856553 131856598 -45117542 - MSTD LTR MaLR -79 317 272 * 2477 68 3 0 chrX 131856610 131856917 -45117223 - AluY SINE Alu -3 308 1 280 169 68 17 chrX 131856922 131856981 -45117159 + MLT1A2 LTR MaLR 313 374 0 3654 200 80 123 chrX 131856985 131857201 -45116939 + MLT1A1-int LTR MaLR 5 229 -1142 2162 99 0 41 chrX 131857201 131857515 -45116625 + AluSc SINE Alu 1 301 -8 3654 200 80 123 chrX 131857515 131858718 -45115422 + MLT1A1-int LTR MaLR 229 1363 -8 1599 184 21 45 chrX 131858724 131858878 -45115262 + MLT1A1 LTR MaLR 1 157 -208 2099 58 0 0 chrX 131858878 131859149 -45114991 + L1PA8 LINE L1 5912 6182 0 1599 184 21 45 chrX 131859149 131859365 -45114775 + MLT1A1 LTR MaLR 157 365 0 274 188 17 13 chrX 131859885 131859956 -45114184 - MIR SINE MIR -87 121 54 2833 305 185 20 chrX 131860431 131862101 -45112039 - L2 LINE L2 -528 2786 841 501 292 107 0 chrX 131862126 131862304 -45111836 - L2 LINE L2 -1306 2008 1812 43294 34 23 2 chrX 131862352 131868373 -45105767 - L1PA3 LINE L1 0 6155 7 829 100 43 29 chrX 131868364 131868504 -45105636 - L1M1 LINE L1 -816 5486 5345 * 1121 44 0 0 chrX 131868505 131868641 -45105499 - L1P LINE L1 -6010 136 1 2781 242 79 52 chrX 131868655 131869836 -45104304 - L1MDb LINE L1 -5303 1106 7 534 291 29 42 chrX 131870064 131870282 -45103858 + MIR SINE MIR 5 220 -42 202 338 0 14 chrX 131870308 131870382 -45103758 + MIR SINE MIR 160 232 -30 1920 151 3 19 chrX 131871426 131871738 -45102402 + AluSx SINE Alu 5 311 -1 260 266 13 0 chrX 131871795 131871874 -45102266 + MER116 DNA Mariner 1 80 0 212 336 36 18 chrX 131871895 131872005 -45102135 - L2 LINE L2 -19 3294 3183 771 317 37 0 chrX 131872117 131872363 -45101777 + MIR SINE MIR 4 258 -4 281 87 0 22 chrX 131872365 131872411 -45101729 + (CAT)n Simple_repeat Simple_repeat 3 47 0 23 33 0 0 chrX 131872959 131872989 -45101151 + AT_rich Low_complexity Low_complexity 1 30 0 46 19 0 0 chrX 131873602 131873655 -45100485 + AT_rich Low_complexity Low_complexity 1 53 0 25 65 0 0 chrX 131874508 131874554 -45099586 + AT_rich Low_complexity Low_complexity 1 46 0 396 59 0 0 chrX 131874622 131874673 -45099467 + (TA)n Simple_repeat Simple_repeat 2 52 0 23 68 0 0 chrX 131874729 131874773 -45099367 + AT_rich Low_complexity Low_complexity 1 44 0 978 155 32 21 chrX 131875128 131875315 -45098825 + MER53 DNA DNA 1 189 0 441 326 29 92 chrX 131875925 131876373 -45097767 - L2 LINE L2 -7 3265 2846 329 221 12 47 chrX 131876444 131876530 -45097610 + L2 LINE L2 3231 3313 0 396 216 52 10 chrX 131876551 131876648 -45097492 + MER103 DNA DNA 65 165 -1 625 253 122 53 chrX 131877165 131877410 -45096730 - MIR SINE MIR 0 262 1 470 67 22 22 chrX 131877925 131878015 -45096125 + (TA)n Simple_repeat Simple_repeat 1 90 0 797 184 128 15 chrX 131878111 131878307 -45095833 - L1ME3A LINE L1 -1 6169 5952 416 315 21 21 chrX 131878848 131878991 -45095149 - MIR SINE MIR -109 153 11 300 231 336 35 chrX 131879192 131879335 -45094805 + MER5A DNA MER1_type 4 189 0 1067 197 0 0 chrX 131879700 131879893 -45094247 + L1P LINE L1 4840 5032 -1114 522 301 72 78 chrX 131880378 131880973 -45093167 - L2 LINE L2 0 3313 2713 347 281 8 55 chrX 131880930 131881058 -45093082 - MIR SINE MIR -130 132 11 * 334 271 90 23 chrX 131881525 131881658 -45092482 - MIR SINE MIR -108 154 13 1061 199 78 78 chrX 131881915 131882247 -45091893 - MER58B DNA MER1_type -1 340 9 208 151 55 27 chrX 131883369 131883442 -45090698 + (TA)n Simple_repeat Simple_repeat 1 75 0 224 190 38 25 chrX 131883503 131883582 -45090558 + (TA)n Simple_repeat Simple_repeat 2 81 0 973 251 4 30 chrX 131883868 131884103 -45090037 - MIR SINE MIR -26 236 8 938 235 20 0 chrX 131884520 131884724 -45089416 - MER3 DNA MER1_type 0 209 2 206 372 51 10 chrX 131884746 131884942 -45089198 - L2 LINE L2 -1148 2166 1963 334 239 0 0 chrX 131885963 131886030 -45088110 + MIR SINE MIR 56 122 -140 197 271 0 51 chrX 131886670 131886729 -45087411 + L2 LINE L2 3202 3257 -15 400 258 230 32 chrX 131886807 131887024 -45087116 - MIR3 SINE MIR 0 262 3 570 354 42 4 chrX 131888668 131888905 -45085235 + MIR SINE MIR 3 248 -14 307 317 73 39 chrX 131890231 131890463 -45083677 + MIR SINE MIR 5 250 -12 228 320 0 0 chrX 131891152 131891202 -45082938 + L2 LINE L2 3162 3211 -61 1023 226 11 26 chrX 131891207 131891473 -45082667 + MLT1K LTR MaLR 327 588 0 573 307 35 47 chrX 131891658 131891912 -45082228 - L2 LINE L2 -249 3064 2814 395 351 184 10 chrX 131892657 131893136 -45081004 - L2 LINE L2 -595 2719 2158 189 139 0 0 chrX 131893554 131893597 -45080543 + (T)n Simple_repeat Simple_repeat 1 43 0 722 283 77 20 chrX 131894412 131894659 -45079481 - MIR SINE MIR 0 262 2 256 341 115 34 chrX 131895180 131895388 -45078752 - MIR SINE MIR -27 235 11 1422 266 80 6 chrX 131895529 131896037 -45078103 - L1MD2 LINE L1 -2 6357 5810 607 186 0 0 chrX 131896073 131896186 -45077954 - L1MD2 LINE L1 -696 5663 5551 290 248 49 34 chrX 131896241 131896512 -45077628 - L1P LINE L1 -794 5360 5081 480 312 55 91 chrX 131896706 131897014 -45077126 + L2 LINE L2 2969 3265 -7 1469 217 43 27 chrX 131898023 131898391 -45075749 - MLT1A2 LTR MaLR 0 374 1 425 349 72 6 chrX 131898662 131898828 -45075312 + MIR3 SINE MIR 10 186 -22 225 244 47 23 chrX 131899209 131899295 -45074845 + MER117 DNA MER1_type 1 88 -109 1007 261 92 27 chrX 131900246 131900614 -45073526 - LTR16C LTR ERVL 0 491 100 704 61 10 0 chrX 131901857 131901955 -45072185 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 234 91 0 0 chrX 131901964 131901997 -45072143 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 2141 78 89 0 chrX 131902105 131902386 -45071754 + AluSg SINE Alu 1 306 -4 199 364 25 17 chrX 131902864 131902982 -45071158 + MER5A DNA MER1_type 36 154 -35 2474 81 3 3 chrX 131903937 131904272 -45069868 - L1PA13 LINE L1 -2 6161 5827 261 293 121 20 chrX 131904677 131904776 -45069364 + MIR SINE MIR 1 109 -153 22 35 0 0 chrX 131904814 131904843 -45069297 + AT_rich Low_complexity Low_complexity 1 29 0 395 314 50 0 chrX 131905769 131905890 -45068250 - MIR SINE MIR -74 188 62 323 248 86 29 chrX 131906528 131906633 -45067507 + MIR SINE MIR 94 204 -58 21 36 0 0 chrX 131906936 131906964 -45067176 + AT_rich Low_complexity Low_complexity 1 28 0 352 325 71 19 chrX 131906970 131907124 -45067016 - MIR3 SINE MIR -6 202 41 274 176 59 84 chrX 131907146 131907192 -45066948 - L1ME4a LINE L1 -24 6097 6051 2339 74 3 26 chrX 131907192 131907502 -45066638 + AluY SINE Alu 1 303 -8 274 176 59 84 chrX 131907502 131907574 -45066566 - L1ME4a LINE L1 -70 6051 5982 207 209 0 23 chrX 131907646 131907689 -45066451 - MIR SINE MIR -148 60 19 975 260 62 17 chrX 131908885 131909177 -45064963 + L2 LINE L2 3009 3313 0 471 281 30 61 chrX 131909272 131909436 -45064704 - MIR SINE MIR -65 197 39 453 225 169 56 chrX 131910810 131910970 -45063170 + MER5B DNA MER1_type 1 178 0 274 273 114 0 chrX 131911043 131911131 -45063009 + L2 LINE L2 3191 3288 -25 1482 315 100 14 chrX 131914364 131915244 -45058896 - L2 LINE L2 -9 3304 2348 274 313 17 26 chrX 131917212 131917327 -45056813 - L2 LINE L2 -9 3304 3191 1965 141 0 0 chrX 131918259 131918543 -45055597 + AluJb SINE Alu 1 284 -28 436 290 40 8 chrX 131918827 131918951 -45055189 - MIR SINE MIR -109 153 26 195 356 44 22 chrX 131918960 131919140 -45055000 - L2 LINE L2 -503 2811 2628 4014 157 88 47 chrX 131919246 131920254 -45053886 - L1MA7 LINE L1 0 6291 5237 734 152 28 56 chrX 131920254 131920432 -45053708 + L1MA9 LINE L1 6140 6312 0 5838 54 1 6 chrX 131920525 131921339 -45052801 - L1P LINE L1 -2275 3871 3062 292 229 12 121 chrX 131921440 131921606 -45052534 - MER46C DNA MER2_type -190 148 1 441 242 39 48 chrX 131921988 131922162 -45051978 + MIR SINE MIR 17 185 -58 188 180 0 20 chrX 131922573 131922623 -45051517 + CT-rich Low_complexity Low_complexity 1 49 0 463 293 141 21 chrX 131923187 131923378 -45050762 - MIR SINE MIR -16 246 33 2866 81 36 42 chrX 131923487 131923535 -45050605 - MLT2A1 LTR ERVL 0 444 397 279 0 0 0 chrX 131923535 131923566 -45050574 + (CA)n Simple_repeat Simple_repeat 2 32 0 2866 81 36 42 chrX 131923566 131923964 -45050176 - MLT2A1 LTR ERVL -47 397 1 1549 167 55 44 chrX 131923964 131924266 -45049874 + MLT1A2 LTR MaLR 5 314 -60 2298 68 24 3 chrX 131924266 131924559 -45049581 - AluY SINE Alu -12 299 1 1549 167 55 44 chrX 131924559 131924621 -45049519 + MLT1A2 LTR MaLR 314 374 0 573 235 76 0 chrX 131924942 131925074 -45049066 + MIR SINE MIR 96 237 -25 228 200 20 20 chrX 131925230 131925280 -45048860 + L2 LINE L2 3218 3267 -5 2292 108 0 0 chrX 131925340 131925636 -45048504 + AluSx SINE Alu 1 296 -16 330 359 0 0 chrX 131926194 131926300 -45047840 + L2 LINE L2 3208 3313 0 263 182 91 15 chrX 131926528 131926594 -45047546 + L2 LINE L2 3241 3311 -2 287 314 95 88 chrX 131927438 131927721 -45046419 - L2 LINE L2 -56 3216 2932 300 283 100 17 chrX 131927873 131927993 -45046147 - L2 LINE L2 -1 3312 3183 250 258 76 15 chrX 131928011 131928077 -45046063 - MIR SINE MIR -118 90 21 626 300 50 46 chrX 131928278 131928538 -45045602 - MIR SINE MIR 0 262 2 321 245 187 22 chrX 131928867 131929006 -45045134 - MIR SINE MIR -28 234 73 367 270 352 32 chrX 131929715 131930059 -45044081 - L2 LINE L2 0 3272 2819 491 195 158 24 chrX 131930226 131930390 -45043750 + LTR16A1 LTR ERVL 168 353 -104 493 274 8 16 chrX 131931484 131931608 -45042532 - MIR3 SINE MIR -52 156 34 3127 234 45 10 chrX 131933155 131934172 -45039968 + L1MB4 LINE L1 2613 3665 -2481 2931 228 30 6 chrX 131934169 131934968 -45039172 + L1MB4 LINE L1 4175 4992 -1154 * 4904 75 1 0 chrX 131934966 131935831 -45038309 - L1PA7 LINE L1 -241 5913 5048 1653 39 0 0 chrX 131935831 131936039 -45038101 + L1PA7 LINE L1 5926 6133 -21 * 3808 196 44 17 chrX 131936038 131936476 -45037664 + L1MB4 LINE L1 4976 5401 -779 7592 23 1 1 chrX 131936476 131937415 -45036725 + L1PA4 LINE L1 5209 6152 -3 3808 196 44 17 chrX 131937415 131938147 -45035993 + L1MB4 LINE L1 5401 6180 0 1645 93 4 32 chrX 131938308 131938556 -45035584 - L1PA8A LINE L1 0 6131 5891 852 245 139 25 chrX 131938875 131939234 -45034906 - MLT1E3 LTR MaLR -123 501 102 1388 236 53 76 chrX 131939501 131939535 -45034605 - MLT2B1 LTR ERVL -6 514 481 342 0 0 0 chrX 131939535 131939573 -45034567 + (TG)n Simple_repeat Simple_repeat 2 39 0 1388 236 53 76 chrX 131939573 131940064 -45034076 - MLT2B1 LTR ERVL -39 481 1 2377 83 27 0 chrX 131940308 131940609 -45033531 - AluSg SINE Alu -1 309 1 3117 45 0 15 chrX 131941373 131941392 -45032748 - L1PA5 LINE L1 0 6154 6136 192 40 0 0 chrX 131941392 131941417 -45032723 + (TA)n Simple_repeat Simple_repeat 2 26 0 3117 45 0 15 chrX 131941417 131941797 -45032343 - L1PA5 LINE L1 -18 6136 5761 235 256 163 12 chrX 131942937 131943023 -45031117 - MIR3 SINE MIR -18 190 92 1683 267 21 61 chrX 131943442 131944274 -45029866 + L2 LINE L2 2534 3310 -3 1683 246 89 40 chrX 131944472 131945054 -45029086 - MLT1E2 LTR MaLR -3 623 13 338 290 205 10 chrX 131945089 131945289 -45028851 + MIR SINE MIR 4 242 -20 282 143 0 0 chrX 131947156 131947205 -45026935 + (CA)n Simple_repeat Simple_repeat 1 49 0 554 0 15 0 chrX 131947720 131947786 -45026354 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2027 116 59 37 chrX 131947796 131948151 -45025989 + THE1B LTR MaLR 1 363 -1 1447 164 71 41 chrX 131948151 131948420 -45025720 - AluJo SINE Alu -31 281 5 384 250 0 30 chrX 131948794 131948894 -45025246 - MER5A DNA MER1_type -80 109 13 336 263 12 7 chrX 131948903 131949005 -45025135 - MIR SINE MIR -58 150 53 520 250 36 48 chrX 131949261 131949429 -45024711 - MER5B DNA MER1_type -12 166 1 606 0 64 0 chrX 131950052 131950146 -45023994 + (GA)n Simple_repeat Simple_repeat 2 101 0 583 286 11 11 chrX 131950187 131950365 -45023775 - MER5B DNA MER1_type 0 178 1 795 211 22 28 chrX 131950442 131950622 -45023518 + MER5A DNA MER1_type 2 180 -9 440 247 48 55 chrX 131951398 131951420 -45022720 - MIR3 SINE MIR -31 177 156 1071 171 8 73 chrX 131951420 131951654 -45022486 + MER20 DNA MER1_type 1 219 0 440 247 48 55 chrX 131951654 131951777 -45022363 - MIR3 SINE MIR -52 156 33 231 238 0 16 chrX 131951818 131951881 -45022259 - L2 LINE L2 -1 3271 3210 209 213 43 0 chrX 131952022 131952069 -45022071 - L2 LINE L2 -86 3227 3179 367 326 171 29 chrX 131952254 131952628 -45021512 - L2 LINE L2 -28 3244 2818 2214 118 0 7 chrX 131953542 131953847 -45020293 - AluSx SINE Alu -8 304 2 372 308 9 9 chrX 131953906 131954013 -45020127 + MIR3 SINE MIR 65 171 -37 24 0 0 0 chrX 131956790 131956814 -45017326 + AT_rich Low_complexity Low_complexity 1 24 0 279 0 0 0 chrX 131959575 131959606 -45014534 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chrX 131960842 131960865 -45013275 + AT_rich Low_complexity Low_complexity 1 23 0 417 39 0 0 chrX 131961918 131961969 -45012171 + (CA)n Simple_repeat Simple_repeat 2 52 0 22449 135 117 40 chrX 131962562 131967582 -45006558 - L1P4 LINE L1 -732 5436 12 1915 187 25 117 chrX 131967593 131967728 -45006412 - L1M1 LINE L1 -7050 515 369 4140 93 23 7 chrX 131967728 131968331 -45005809 + L1PA14 LINE L1 5546 6158 -3 1915 187 25 117 chrX 131968331 131968750 -45005390 - L1M1 LINE L1 -7196 369 12 22 70 0 0 chrX 131969130 131969173 -45004967 + AT_rich Low_complexity Low_complexity 1 43 0 1502 199 52 28 chrX 131969204 131969566 -45004574 + MLT1A2 LTR MaLR 4 374 0 330 276 38 123 chrX 131969757 131970018 -45004122 - MIR SINE MIR -22 240 2 3026 207 31 24 chrX 131970214 131971003 -45003137 - L1MC4a LINE L1 0 7808 7056 198 71 0 0 chrX 131971003 131971031 -45003109 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 3026 207 31 24 chrX 131971031 131971074 -45003066 - L1MC4a LINE L1 -752 7056 7015 956 247 45 47 chrX 131971104 131971501 -45002639 + L1MC/D LINE L1 4959 5352 -1044 204 111 0 0 chrX 131971501 131971537 -45002603 + (CA)n Simple_repeat Simple_repeat 1 36 0 956 247 45 47 chrX 131971537 131971778 -45002362 + L1MC/D LINE L1 5352 5592 -804 521 227 28 74 chrX 131972086 131972262 -45001878 - MIR3 SINE MIR 0 208 41 479 297 58 0 chrX 131972631 131972769 -45001371 + MER91A DNA MER1_type 26 171 -25 201 291 91 0 chrX 131972800 131972855 -45001285 + MER91A DNA MER1_type 127 186 -4 2379 101 19 27 chrX 131972855 131973222 -45000918 + THE1B LTR MaLR 1 364 0 42 0 0 0 chrX 131973301 131973343 -45000797 + AT_rich Low_complexity Low_complexity 1 42 0 236 247 67 27 chrX 131973887 131974037 -45000103 - L1ME LINE L1 -237 5884 5729 217 227 0 0 chrX 131975259 131975303 -44998837 - L2 LINE L2 0 3313 3270 263 330 37 26 chrX 131975386 131975577 -44998563 - L2 LINE L2 -1079 2235 2043 22 35 0 0 chrX 131976145 131976174 -44997966 + AT_rich Low_complexity Low_complexity 1 29 0 707 208 0 0 chrX 131976956 131977076 -44997064 + FLAM_A SINE Alu 1 120 -13 276 316 105 18 chrX 131977223 131977337 -44996803 + MIR3 SINE MIR 47 170 -38 655 317 27 0 chrX 131977452 131977638 -44996502 + MIR SINE MIR 25 215 -47 188 290 48 16 chrX 131978254 131978316 -44995824 + MIR SINE MIR 22 85 -123 243 0 0 0 chrX 131978804 131978831 -44995309 + (CA)n Simple_repeat Simple_repeat 2 28 0 799 150 6 12 chrX 131978886 131979046 -44995094 + CT-rich Low_complexity Low_complexity 2 160 0 1193 95 0 6 chrX 131979046 131979225 -44994915 + (TTC)n Simple_repeat Simple_repeat 1 178 0 1891 138 0 25 chrX 131979233 131979516 -44994624 - AluSx SINE Alu -32 280 5 579 144 6 120 chrX 131979632 131979799 -44994341 - L1MB1 LINE L1 -5 6163 6016 * 2252 167 0 5 chrX 131979797 131980199 -44993941 - L1MB1 LINE L1 -355 5813 5414 * 2566 172 16 22 chrX 131980197 131980812 -44993328 + L1MB1 LINE L1 4821 5433 -735 472 320 8 0 chrX 131980812 131980940 -44993200 - MIR3 SINE MIR -65 143 15 240 307 74 113 chrX 131982243 131982288 -44991852 + L2 LINE L2 2832 2877 -395 351 0 0 0 chrX 131982288 131982327 -44991813 + (TG)n Simple_repeat Simple_repeat 2 40 0 240 307 74 113 chrX 131982327 131982740 -44991400 + L2 LINE L2 2877 3272 0 198 0 0 0 chrX 131982948 131982970 -44991170 + (A)n Simple_repeat Simple_repeat 1 22 0 369 209 11 126 chrX 131983450 131983632 -44990508 - Charlie2a DNA MER1_type -2 2860 2700 * 785 226 0 0 chrX 131983618 131983786 -44990354 - Charlie2a DNA MER1_type -1197 1665 1498 504 167 44 9 chrX 131983840 131983954 -44990186 - Charlie2b DNA MER1_type -2098 684 567 461 299 0 0 chrX 131983981 131984108 -44990032 - Charlie2b DNA MER1_type -2564 298 172 381 55 0 0 chrX 131984181 131984236 -44989904 + L1PA3 LINE L1 6101 6155 0 309 358 20 34 chrX 131984256 131984404 -44989736 - MIR3 SINE MIR -46 162 17 550 227 196 36 chrX 131984838 131985032 -44989108 + MIR SINE MIR 38 262 0 2589 30 0 0 chrX 131985084 131985379 -44988761 + AluY SINE Alu 1 295 -16 741 214 0 107 chrX 131985536 131985770 -44988370 + MER3 DNA MER1_type 1 209 0 2774 137 2 2 chrX 131986938 131987375 -44986765 - L1PB3 LINE L1 0 6154 5718 643 25 0 0 chrX 131988102 131988182 -44985958 - L1PA5 LINE L1 -1 6153 6074 248 0 0 0 chrX 131988182 131988211 -44985929 + L1P2 LINE L1 5744 5772 -382 595 254 44 73 chrX 131988243 131988491 -44985649 + MIR SINE MIR 1 241 -21 229 297 50 79 chrX 131988756 131988857 -44985283 + L2 LINE L2 3148 3245 -27 770 227 91 19 chrX 131989444 131989725 -44984415 - MSTC LTR MaLR 0 428 87 3872 220 32 3 chrX 131989727 131990738 -44983402 + L1M4 LINE L1 2221 3260 -2886 4774 147 65 17 chrX 131990748 131990989 -44983151 + L1MA6 LINE L1 5258 5486 -814 2394 73 0 3 chrX 131990989 131991289 -44982851 + AluY SINE Alu 1 299 -12 4774 147 65 17 chrX 131991289 131991566 -44982574 + L1MA6 LINE L1 5486 5748 -552 207 0 0 0 chrX 131991566 131991589 -44982551 + (CA)n Simple_repeat Simple_repeat 2 24 0 4774 147 65 17 chrX 131991589 131992064 -44982076 + L1MA6 LINE L1 5748 6300 0 248 206 137 10 chrX 131992084 131992186 -44981954 + L1M4 LINE L1 5191 5305 -841 227 122 0 0 chrX 131992223 131992264 -44981876 + L1MA7 LINE L1 6251 6291 0 782 266 62 9 chrX 131992275 131992501 -44981639 - MIR SINE MIR 0 262 25 215 286 71 12 chrX 131993224 131993308 -44980832 + MIR SINE MIR 1 89 -173 483 319 9 0 chrX 131993361 131993477 -44980663 - L2 LINE L2 -9 3263 3147 380 333 124 44 chrX 131994152 131994605 -44979535 + L2 LINE L2 2363 2851 -463 449 271 8 17 chrX 131994659 131994777 -44979363 - L2 LINE L2 -18 3295 3179 183 204 0 0 chrX 131995189 131995233 -44978907 + GA-rich Low_complexity Low_complexity 2 45 0 260 384 67 12 chrX 131995567 131995731 -44978409 + MIR3 SINE MIR 11 183 -25 1899 134 73 25 chrX 131996524 131996882 -44977258 - THE1C LTR MaLR 0 375 1 4154 102 9 17 chrX 131996882 131997526 -44976614 - THE1C-int LTR MaLR 0 1580 942 957 90 0 0 chrX 131997526 131997659 -44976481 - MLT2A2 LTR ERVL -320 133 1 909 203 17 11 chrX 131997839 131998016 -44976124 + MER45A DNA AcHobo 1 178 0 677 280 142 20 chrX 131998214 131998510 -44975630 - L2 LINE L2 -1 3271 2940 2379 166 28 5 chrX 131998681 131999103 -44975037 + MSTB1 LTR MaLR 1 432 0 257 320 13 0 chrX 131999281 131999359 -44974781 - MER58 DNA MER1_type -136 79 1 186 203 17 68 chrX 131999376 131999435 -44974705 + L2 LINE L2 2921 2976 -338 218 250 0 0 chrX 131999655 131999707 -44974433 + L2 LINE L2 3255 3306 -7 286 149 43 11 chrX 131999711 131999772 -44974368 - MIR SINE MIR -94 168 106 525 143 48 0 chrX 131999936 132000020 -44974120 + FLAM_A SINE Alu 33 120 -22 7094 56 0 1 chrX 132000638 132002055 -44972085 - L1PA5 LINE L1 0 6154 4739 28930 70 17 10 chrX 132002056 132006205 -44967935 + L1PA5 LINE L1 559 4734 -1412 202 204 45 0 chrX 132006536 132006580 -44967560 + CT-rich Low_complexity Low_complexity 1 46 0 417 298 15 15 chrX 132007009 132007140 -44967000 - MIR3 SINE MIR -45 163 33 647 275 16 16 chrX 132008018 132008207 -44965933 + MIR SINE MIR 4 192 -70 185 318 54 54 chrX 132008306 132008454 -44965686 + MIR3 SINE MIR 12 159 -49 310 322 18 53 chrX 132008474 132008645 -44965495 - MER5A DNA MER1_type -8 181 17 387 301 18 9 chrX 132009103 132009216 -44964924 - MIR SINE MIR -76 186 73 407 291 0 43 chrX 132009333 132009450 -44964690 + L2 LINE L2 3201 3312 -1 206 254 55 18 chrX 132009447 132009502 -44964638 - MIR SINE MIR -186 76 20 * 266 0 29 0 chrX 132009516 132009550 -44964590 + (TC)n Simple_repeat Simple_repeat 1 35 0 2596 229 48 28 chrX 132009554 132010056 -44964084 - L1ME2 LINE L1 -19 6145 5655 7590 42 1 0 chrX 132010056 132011757 -44962383 - L1PA4 LINE L1 0 6155 4452 2596 229 48 28 chrX 132011757 132012328 -44961812 - L1ME2 LINE L1 -509 5655 5041 672 325 45 8 chrX 132012441 132012687 -44961453 + MIR SINE MIR 7 261 -1 1605 179 63 47 chrX 132014003 132014449 -44959691 + MLT1C LTR MaLR 6 458 -9 328 210 185 0 chrX 132014597 132014678 -44959462 + MIR SINE MIR 84 179 -83 1814 158 10 45 chrX 132015516 132015914 -44958226 - MLT1B LTR MaLR 0 390 7 471 331 44 14 chrX 132016092 132016325 -44957815 - MIR3 SINE MIR -9 253 6 234 284 0 95 chrX 132017003 132017119 -44957021 - MIR SINE MIR -56 206 102 734 276 89 22 chrX 132017414 132017639 -44956501 - MIR SINE MIR -12 250 11 195 277 0 0 chrX 132018957 132019004 -44955136 - MIR3 SINE MIR -11 197 151 426 314 41 0 chrX 132019410 132019531 -44954609 - MIR3 SINE MIR -77 131 6 547 281 41 4 chrX 132021338 132021525 -44952615 + MIR SINE MIR 15 208 -54 3419 185 20 0 chrX 132021985 132022677 -44951463 - L1PA15 LINE L1 -1545 4601 3896 5767 118 5 15 chrX 132022679 132024235 -44949905 + L1PA15 LINE L1 4607 6164 -1 346 254 85 146 chrX 132025291 132025786 -44948354 + L2 LINE L2 1790 2254 -1060 190 358 32 0 chrX 132025920 132026015 -44948125 - L2 LINE L2 -2 3270 3173 285 374 52 9 chrX 132026091 132026206 -44947934 - L2 LINE L2 -4 3268 3149 214 175 0 0 chrX 132026930 132026970 -44947170 + L2 LINE L2 3274 3313 0 315 339 47 47 chrX 132026997 132027124 -44947016 - L2 LINE L2 -27 3245 3119 394 314 138 0 chrX 132027147 132027306 -44946834 - MIR SINE MIR 0 262 82 535 256 107 19 chrX 132027791 132028006 -44946134 + L1ME1 LINE L1 5915 6148 -18 215 345 0 0 chrX 132029769 132029827 -44944313 - L2 LINE L2 -87 3185 3128 192 379 0 0 chrX 132030435 132030493 -44943647 - L2 LINE L2 -87 3185 3128 235 216 39 0 chrX 132030645 132030696 -44943444 - MIR SINE MIR -107 101 49 363 23 0 0 chrX 132030898 132030942 -44943198 + (CA)n Simple_repeat Simple_repeat 2 45 0 1882 108 0 90 chrX 132031014 132031347 -44942793 - AluSg SINE Alu -7 303 1 432 0 0 0 chrX 132033743 132033791 -44940349 + (CA)n Simple_repeat Simple_repeat 1 48 0 206 267 191 29 chrX 132034000 132034105 -44940035 - L2 LINE L2 -14 3299 3178 342 61 0 0 chrX 132034361 132034410 -44939730 + (CA)n Simple_repeat Simple_repeat 2 50 0 180 291 9 82 chrX 132034856 132034966 -44939174 + L3 LINE CR1 1451 1552 -25 73 12 0 0 chrX 132035311 132035391 -44938749 + AT_rich Low_complexity Low_complexity 1 80 0 239 155 155 48 chrX 132035505 132035608 -44938532 - L1ME4a LINE L1 -175 5946 5833 185 304 0 0 chrX 132035952 132035998 -44938142 + L2 LINE L2 3223 3268 -4 213 94 0 0 chrX 132036420 132036452 -44937688 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 955 311 34 70 chrX 132036625 132036666 -44937474 + L2 LINE L2 2859 2900 -413 2157 123 0 10 chrX 132036666 132036975 -44937165 - AluSx SINE Alu -6 306 1 955 311 34 70 chrX 132036975 132037403 -44936737 + L2 LINE L2 2900 3311 -2 357 182 120 38 chrX 132037502 132037656 -44936484 + MLT1H1 LTR MaLR 368 555 0 778 217 98 0 chrX 132038011 132038214 -44935926 + MER58A DNA MER1_type 2 224 0 657 286 61 82 chrX 132038437 132038961 -44935179 - MER34 LTR ERV1 -29 513 1 409 301 78 18 chrX 132039004 132039170 -44934970 - MIR SINE MIR -84 178 3 198 160 0 0 chrX 132039362 132039412 -44934728 + (CA)n Simple_repeat Simple_repeat 2 51 0 324 130 0 0 chrX 132039449 132039518 -44934622 + (CA)n Simple_repeat Simple_repeat 1 69 0 353 294 90 61 chrX 132039837 132040147 -44933993 + L1ME4a LINE L1 5779 6097 -24 227 315 62 15 chrX 132041671 132041801 -44932339 - MIR SINE MIR -10 252 117 305 366 127 24 chrX 132042149 132043152 -44930988 - L2 LINE L2 -1317 1997 892 335 354 75 17 chrX 132043324 132043564 -44930576 - L2 LINE L2 -2870 444 191 444 203 70 0 chrX 132044141 132044269 -44929871 - L1ME4a LINE L1 -1 6120 5984 311 277 96 58 chrX 132044400 132044588 -44929552 - L1ME4a LINE L1 -355 5807 5613 201 213 0 0 chrX 132044593 132044640 -44929500 + CT-rich Low_complexity Low_complexity 2 48 0 1190 194 25 35 chrX 132044700 132044984 -44929156 + MER58B DNA MER1_type 61 341 0 423 248 37 0 chrX 132045090 132045199 -44928941 + MIR SINE MIR 118 230 -32 367 292 55 17 chrX 132046424 132046715 -44927425 - L1M4 LINE L1 -3376 2770 2469 24 53 0 0 chrX 132046725 132046763 -44927377 + AT_rich Low_complexity Low_complexity 1 38 0 191 283 54 54 chrX 132047972 132048064 -44926076 - MIR SINE MIR -94 168 77 213 200 0 0 chrX 132048328 132048368 -44925772 + (CA)n Simple_repeat Simple_repeat 1 40 0 217 330 0 23 chrX 132048666 132048754 -44925386 + L2 LINE L2 2360 2445 -869 250 298 36 36 chrX 132048842 132048926 -44925214 - MIR3 SINE MIR -119 89 6 * 405 229 89 76 chrX 132048854 132049011 -44925129 + MIR SINE MIR 11 169 -93 1363 144 4 40 chrX 132049024 132049301 -44924839 + L1MB8 LINE L1 5906 6172 -6 213 244 0 0 chrX 132050560 132050601 -44923539 + L2 LINE L2 3220 3260 -12 239 244 13 0 chrX 132050719 132050797 -44923343 + (TA)n Simple_repeat Simple_repeat 2 80 0 314 266 0 32 chrX 132050961 132051055 -44923085 - L1MC4 LINE L1 -1336 6706 6616 213 262 12 60 chrX 132051715 132051799 -44922341 + MIR SINE MIR 86 165 -97 323 315 110 7 chrX 132051898 132052044 -44922096 + L1ME LINE L1 5385 5545 -576 10141 175 30 5 chrX 132052048 132054202 -44919938 - L1 LINE L1 -1161 6404 4197 13441 153 54 10 chrX 132054213 132054569 -44919571 - L1PB1 LINE L1 0 6867 6528 468 0 0 0 chrX 132054569 132054621 -44919519 + (TA)n Simple_repeat Simple_repeat 1 52 0 13441 153 54 10 chrX 132054621 132060239 -44913901 - L1PB1 LINE L1 -339 6528 634 1030 163 5 0 chrX 132060240 132060430 -44913710 - L1PB1 LINE L1 -6666 197 7 14019 159 22 10 chrX 132060453 132063511 -44910629 - L1 LINE L1 -3359 4206 1109 5662 127 187 90 chrX 132063511 132065056 -44909084 + pTR5 LTR ERV1 744 2438 0 3341 201 3 2 chrX 132065059 132065676 -44908464 - L1 LINE L1 -6452 1113 496 16994 84 2 2 chrX 132065750 132068909 -44905231 - L1PA7 LINE L1 -2 6152 2995 641 265 89 19 chrX 132068909 132069190 -44904950 - MLT1H1 LTR MaLR -220 370 67 269 242 32 0 chrX 132069627 132069689 -44904451 - L3 LINE CR1 -8 1569 1506 502 209 0 82 chrX 132069760 132069894 -44904246 - MIR SINE MIR -70 192 70 252 0 0 0 chrX 132071322 132071350 -44902790 + (A)n Simple_repeat Simple_repeat 1 28 0 313 318 0 0 chrX 132071752 132071837 -44902303 - MIR SINE MIR -108 154 70 565 317 94 82 chrX 132072411 132072875 -44901265 - L2 LINE L2 -15 3257 2787 188 122 24 0 chrX 132073340 132073381 -44900759 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 22 56 0 0 chrX 132073412 132073448 -44900692 + AT_rich Low_complexity Low_complexity 1 36 0 256 223 184 39 chrX 132073617 132073720 -44900420 + MER5B DNA MER1_type 2 119 -59 2284 104 45 25 chrX 132074925 132075282 -44898858 - THE1B LTR MaLR 0 364 1 321 359 72 7 chrX 132075457 132075639 -44898501 + MIR SINE MIR 8 197 -62 2303 157 101 19 chrX 132075694 132076159 -44897981 - MLT1D LTR MaLR -2 503 1 1328 253 67 47 chrX 132076175 132076684 -44897456 + LTR33 LTR ERVL 1 519 -2 379 312 130 7 chrX 132076842 132076996 -44897144 + L2 LINE L2 2879 3051 -221 412 277 57 19 chrX 132077219 132077378 -44896762 - MIR SINE MIR -57 205 41 660 325 25 25 chrX 132077397 132077640 -44896500 - MIR SINE MIR 0 262 20 342 252 112 0 chrX 132077992 132078099 -44896041 + L2 LINE L2 3190 3308 -5 711 212 53 0 chrX 132078372 132078523 -44895617 - MIR SINE MIR -11 251 93 5152 86 7 6 chrX 132078819 132079527 -44894613 + L1PA11 LINE L1 5466 6174 0 22 0 0 0 chrX 132080918 132080940 -44893200 + AT_rich Low_complexity Low_complexity 1 22 0 201 387 75 0 chrX 132081186 132081292 -44892848 + L2 LINE L2 3151 3264 -8 2072 117 0 3 chrX 132081524 132081807 -44892333 - AluSx SINE Alu -30 282 1 2868 181 5 32 chrX 132081824 132082441 -44891699 + L1MB5 LINE L1 5561 6160 -14 2181 166 67 15 chrX 132082447 132082850 -44891290 - MSTA LTR MaLR -4 424 1 617 107 0 10 chrX 132082850 132082953 -44891187 - MSTA-int LTR MaLR 0 1651 1550 * 7348 171 35 2 chrX 132082952 132084303 -44889837 - MSTA-int LTR MaLR -256 1395 1 2224 158 61 19 chrX 132084303 132084714 -44889426 - MSTA LTR MaLR 0 428 1 258 233 33 92 chrX 132085084 132085204 -44888936 - L3 LINE CR1 -882 695 583 216 349 40 53 chrX 132085401 132085553 -44888587 - L3 LINE CR1 -939 638 489 671 103 113 113 chrX 132085570 132085693 -44888447 - L1MA7 LINE L1 -51 6240 6115 947 9 0 0 chrX 132085693 132085802 -44888338 - L1PA2 LINE L1 0 6155 6047 671 103 113 113 chrX 132085802 132085863 -44888277 - L1MA7 LINE L1 -175 6116 6056 496 318 36 15 chrX 132085866 132086061 -44888079 + MIR SINE MIR 58 256 -6 252 224 79 46 chrX 132086138 132086290 -44887850 - L1M4 LINE L1 -777 5369 5213 21 0 0 0 chrX 132086292 132086313 -44887827 + AT_rich Low_complexity Low_complexity 1 21 0 488 354 129 10 chrX 132086401 132086801 -44887339 - L1M4 LINE L1 -1101 5045 4591 392 327 59 12 chrX 132086932 132087351 -44886789 - L1M4 LINE L1 -1712 4434 4000 896 181 6 0 chrX 132087398 132087575 -44886565 + L1MA4 LINE L1 5880 6057 -243 449 289 7 35 chrX 132089897 132090039 -44884101 - MIR3 SINE MIR -68 140 3 24 53 0 0 chrX 132090398 132090436 -44883704 + AT_rich Low_complexity Low_complexity 1 38 0 3563 104 66 9 chrX 132090510 132091088 -44883052 - HSMAR2 DNA Mariner -1 1301 691 211 172 0 35 chrX 132091100 132091158 -44882982 + T-rich Low_complexity Low_complexity 5 60 0 5310 161 8 29 chrX 132091158 132092412 -44881728 - L1PB1 LINE L1 -8 6143 4864 2569 39 7 3 chrX 132092412 132092717 -44881423 - AluY SINE Alu -5 306 1 5310 161 8 29 chrX 132092717 132093156 -44880984 - L1PB1 LINE L1 -1287 4864 4402 528 93 0 0 chrX 132093156 132093231 -44880909 + (TTGTG)n Simple_repeat Simple_repeat 4 78 0 5310 161 8 29 chrX 132093231 132093600 -44880540 - L1PB1 LINE L1 -1749 4402 4027 4633 114 6 1 chrX 132093600 132094316 -44879824 - HSMAR2 DNA Mariner -582 720 2 182 180 82 66 chrX 132094490 132094551 -44879589 - MIR SINE MIR -83 179 118 492 249 130 32 chrX 132095247 132095432 -44878708 + MIR3 SINE MIR 3 205 -3 1860 211 23 31 chrX 132095634 132096323 -44877817 + L1MB7 LINE L1 5456 6139 -25 180 125 0 0 chrX 132096703 132096735 -44877405 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 207 0 0 0 chrX 132097725 132097748 -44876392 + (GA)n Simple_repeat Simple_repeat 2 24 0 431 298 80 39 chrX 132098128 132098440 -44875700 - L1ME LINE L1 -468 5702 5378 235 289 17 54 chrX 132098426 132098665 -44875475 - L1ME LINE L1 -1560 4586 4357 * 4462 160 20 11 chrX 132099501 132099526 -44874614 - L1M2 LINE L1 -726 5565 5542 1330 208 88 59 chrX 132099526 132099968 -44874172 + MSTB2 LTR MaLR 1 455 -2 4462 160 20 11 chrX 132099968 132101013 -44873127 - L1M2 LINE L1 -749 5542 4480 317 273 80 50 chrX 132101677 132101977 -44872163 - L1ME LINE L1 -1986 4160 3852 710 297 40 20 chrX 132102076 132102575 -44871565 - L1ME LINE L1 -3436 2710 2202 2329 8 0 0 chrX 132102578 132102830 -44871310 - AluYb8 SINE Alu 0 318 67 3089 134 6 0 chrX 132102861 132103398 -44870742 - L1P LINE L1 -4390 1756 1217 17437 91 19 10 chrX 132103401 132106085 -44868055 + L1PA7 LINE L1 1940 4647 -1499 8334 30 0 0 chrX 132106074 132107133 -44867007 - L1PA2 LINE L1 -787 5359 4301 * 6810 16 1 4 chrX 132107133 132107921 -44866219 + L1PA2 LINE L1 5363 6153 -2 6799 62 11 10 chrX 132107915 132109435 -44864705 + L1PA7 LINE L1 4631 6153 -1 * 2294 95 17 0 chrX 132110030 132110326 -44863814 + AluSc SINE Alu 1 301 -8 1569 179 31 62 chrX 132110377 132110571 -44863569 + MLT1B LTR MaLR 13 191 -199 288 0 0 0 chrX 132110571 132110603 -44863537 + (CA)n Simple_repeat Simple_repeat 2 33 0 1569 179 31 62 chrX 132110603 132110798 -44863342 + MLT1B LTR MaLR 191 390 0 597 284 77 30 chrX 132110803 132111263 -44862877 - L1MEd LINE L1 -904 1586 1011 269 212 0 159 chrX 132111590 132111722 -44862418 + MIR SINE MIR 86 196 -66 273 128 0 0 chrX 132112736 132112775 -44861365 - MIR SINE MIR -87 121 83 * 508 352 86 41 chrX 132112771 132113261 -44860879 + L2 LINE L2 2540 3040 -273 185 278 69 28 chrX 132113324 132113396 -44860744 + L2 LINE L2 3239 3313 0 1742 10 0 0 chrX 132114123 132114316 -44859824 - AluYb8 SINE Alu -5 313 121 215 308 64 13 chrX 132115767 132115845 -44858295 + L2 LINE L2 3169 3250 -22 422 287 42 36 chrX 132116089 132116256 -44857884 - MIR SINE MIR -48 214 47 551 287 121 27 chrX 132118032 132118255 -44855885 + MIR SINE MIR 13 256 -6 345 82 0 0 chrX 132118261 132118310 -44855830 + (CAT)n Simple_repeat Simple_repeat 2 50 0 249 33 0 0 chrX 132118353 132118383 -44855757 + (CA)n Simple_repeat Simple_repeat 1 30 0 229 350 31 0 chrX 132118468 132118565 -44855575 + L2 LINE L2 1844 1943 -1371 4625 276 109 19 chrX 132118779 132120610 -44853530 + L2 LINE L2 1054 3068 -245 1296 252 63 16 chrX 132120669 132121097 -44853043 + MLT1C LTR MaLR 20 467 0 417 265 132 48 chrX 132121097 132121286 -44852854 + L2 LINE L2 3108 3312 -1 206 171 24 0 chrX 132121356 132121397 -44852743 + CT-rich Low_complexity Low_complexity 2 43 0 2270 92 13 3 chrX 132121884 132122190 -44851950 + AluSc SINE Alu 1 309 0 351 321 18 0 chrX 132122460 132122569 -44851571 + GA-rich Low_complexity Low_complexity 1 111 0 328 294 21 35 chrX 132122647 132122790 -44851350 + MIR3 SINE MIR 66 206 -2 605 283 99 18 chrX 132123533 132123756 -44850384 + MIR SINE MIR 20 260 -2 382 282 74 10 chrX 132123925 132124127 -44850013 + L1ME4a LINE L1 5643 5857 -264 23 0 0 0 chrX 132124620 132124643 -44849497 + AT_rich Low_complexity Low_complexity 1 23 0 722 219 0 12 chrX 132124651 132124815 -44849325 + L1MB5 LINE L1 5988 6149 -25 840 144 58 32 chrX 132124815 132124986 -44849154 + L1MA4 LINE L1 6099 6291 -9 23 0 0 0 chrX 132125042 132125065 -44849075 + AT_rich Low_complexity Low_complexity 1 23 0 190 167 273 0 chrX 132125243 132125309 -44848831 - MIR3 SINE MIR -2 206 123 2434 63 10 3 chrX 132125309 132125612 -44848528 + AluSp SINE Alu 1 305 -8 24 0 0 0 chrX 132125753 132125777 -44848363 + AT_rich Low_complexity Low_complexity 1 24 0 2042 171 43 3 chrX 132127052 132127402 -44846738 + MLT1A1 LTR MaLR 2 365 0 192 337 56 34 chrX 132127833 132127922 -44846218 + MIR SINE MIR 21 111 -151 511 296 26 0 chrX 132127949 132128101 -44846039 + MIR SINE MIR 97 252 -10 840 201 0 0 chrX 132128153 132128297 -44845843 - FRAM SINE Alu -32 144 1 352 262 145 56 chrX 132128417 132128631 -44845509 - MIR SINE MIR 0 262 30 1298 91 5 25 chrX 132128729 132128927 -44845213 - L1PA13 LINE L1 -2 6161 5968 2011 150 0 7 chrX 132128952 132129259 -44844881 + AluJb SINE Alu 1 305 -7 188 356 11 11 chrX 132129485 132129575 -44844565 - MIR3 SINE MIR -15 193 104 236 348 111 60 chrX 132129806 132130122 -44844018 - L2 LINE L2 -87 3185 2854 319 311 84 8 chrX 132132164 132132328 -44841812 - MIR SINE MIR -47 215 45 382 272 43 82 chrX 132133011 132133195 -44840945 + MIR3 SINE MIR 13 189 -19 582 293 99 5 chrX 132133826 132134017 -44840123 + MIR SINE MIR 40 248 -14 186 377 72 0 chrX 132134404 132134473 -44839667 - L2 LINE L2 -52 3220 3147 203 387 31 31 chrX 132134550 132134772 -44839368 - L2 LINE L2 -181 3091 2870 325 351 48 0 chrX 132134962 132135127 -44839013 + L1M4 LINE L1 3269 3441 -2705 707 271 109 45 chrX 132135183 132135504 -44838636 + L1M4 LINE L1 3547 3846 -2300 1501 108 40 5 chrX 132135504 132135726 -44838414 + MER30 DNA MER1_type 1 230 0 707 271 109 45 chrX 132135726 132135768 -44838372 + L1M4 LINE L1 3846 3884 -2262 472 136 0 11 chrX 132135768 132135856 -44838284 + L1PA16 LINE L1 6079 6165 -1 707 271 109 45 chrX 132135856 132136195 -44837945 + L1M4 LINE L1 3884 4295 -1851 24 32 0 0 chrX 132136263 132136294 -44837846 + AT_rich Low_complexity Low_complexity 1 31 0 268 53 0 0 chrX 132136567 132136605 -44837535 - L1P5 LINE L1 -662 5492 5455 3437 144 10 19 chrX 132136606 132137195 -44836945 + L1PA16 LINE L1 5583 6166 0 294 125 0 0 chrX 132137672 132137720 -44836420 + (A)n Simple_repeat Simple_repeat 1 48 0 441 36 0 0 chrX 132138336 132138391 -44835749 + (CA)n Simple_repeat Simple_repeat 2 56 0 227 214 14 0 chrX 132138629 132138699 -44835441 + GA-rich Low_complexity Low_complexity 3 73 0 23 33 0 0 chrX 132139887 132139917 -44834223 + AT_rich Low_complexity Low_complexity 1 30 0 349 358 3 9 chrX 132140505 132140643 -44833497 + MIR SINE MIR 33 171 -37 268 326 149 0 chrX 132140690 132140831 -44833309 + MIR SINE MIR 2 163 -99 252 335 48 39 chrX 132141430 132141539 -44832601 - L2 LINE L2 -556 2758 2645 2108 150 30 55 chrX 132141539 132142011 -44832129 + L1MB8 LINE L1 5713 6172 -6 252 335 48 39 chrX 132142011 132142107 -44832033 - L2 LINE L2 -669 2645 2551 875 278 31 8 chrX 132142205 132142460 -44831680 + MIR SINE MIR 1 261 -1 1743 196 11 14 chrX 132142851 132143208 -44830932 - MLT1A1 LTR MaLR 0 365 10 286 316 177 43 chrX 132143769 132143978 -44830162 + MIR SINE MIR 25 261 -1 393 308 0 30 chrX 132144515 132144669 -44829471 - MIR SINE MIR -63 145 41 182 245 113 0 chrX 132145190 132145243 -44828897 - MIR SINE MIR -85 177 119 239 340 75 0 chrX 132145336 132145430 -44828710 - L2 LINE L2 -50 3222 3122 221 228 0 35 chrX 132145872 132145929 -44828211 + GA-rich Low_complexity Low_complexity 3 57 0 342 278 204 6 chrX 132146159 132146334 -44827806 + MIR SINE MIR 9 210 -52 25 0 0 0 chrX 132146944 132146969 -44827171 + AT_rich Low_complexity Low_complexity 1 25 0 2935 65 3 14 chrX 132146969 132147338 -44826802 - L1PA10 LINE L1 -4 6164 5800 21 36 0 0 chrX 132147418 132147446 -44826694 + AT_rich Low_complexity Low_complexity 1 28 0 575 304 18 36 chrX 132147826 132148050 -44826090 + MIR SINE MIR 18 237 -25 332 276 38 9 chrX 132148119 132148224 -44825916 - MIR3 SINE MIR -25 183 76 396 136 0 0 chrX 132148315 132148374 -44825766 + MIR SINE MIR 92 150 -112 204 221 25 12 chrX 132148405 132148569 -44825571 + (TA)n Simple_repeat Simple_repeat 1 166 0 2299 118 14 39 chrX 132148586 132148950 -44825190 + THE1A LTR MaLR 1 355 0 912 286 9 4 chrX 132150408 132150635 -44823505 + MIR SINE MIR 20 247 -15 620 226 16 58 chrX 132150662 132150852 -44823288 - L1MB8 LINE L1 0 6178 5997 737 332 13 4 chrX 132150859 132151094 -44823046 + MIR SINE MIR 14 250 -12 305 227 91 0 chrX 132151186 132151252 -44822888 + L2 LINE L2 3242 3313 0 432 0 0 0 chrX 132151266 132151314 -44822826 + (TG)n Simple_repeat Simple_repeat 2 49 0 242 337 0 34 chrX 132151622 132151711 -44822429 - MIR SINE MIR -163 99 14 429 257 145 28 chrX 132152017 132152196 -44821944 + MIR3 SINE MIR 2 201 -7 254 329 58 51 chrX 132152676 132152813 -44821327 - L2 LINE L2 -9 3263 3126 364 165 53 86 chrX 132152839 132152944 -44821196 + MIR SINE MIR 87 192 -62 314 248 51 64 chrX 132153042 132153199 -44820941 + L2 LINE L2 3158 3312 -1 426 188 32 104 chrX 132153370 132153524 -44820616 + L2 LINE L2 2292 2434 -880 466 252 109 74 chrX 132153766 132153996 -44820144 + MLT1J LTR MaLR 274 511 0 428 211 93 67 chrX 132154013 132154207 -44819933 + L2 LINE L2 3113 3311 -2 267 146 42 0 chrX 132154336 132154384 -44819756 - L2 LINE L2 -9 3304 3255 240 243 0 29 chrX 132155323 132155393 -44818747 - MIR SINE MIR -6 256 189 983 205 5 34 chrX 132155429 132155634 -44818506 + MER20 DNA MER1_type 1 199 -20 190 259 111 0 chrX 132155659 132155713 -44818427 - MIR SINE MIR -62 146 87 181 164 18 18 chrX 132155717 132155772 -44818368 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 484 183 0 0 chrX 132156503 132156585 -44817555 - Tigger5 DNA MER2_type 0 2323 2242 463 182 0 0 chrX 132156575 132156652 -44817488 + Tigger5 DNA MER2_type 2242 2318 -5 * 529 177 0 0 chrX 132156653 132156732 -44817408 - Tigger5 DNA MER2_type -2244 79 1 836 193 25 35 chrX 132157064 132157261 -44816879 + AluJo SINE Alu 29 223 -89 1016 160 61 28 chrX 132157306 132157487 -44816653 + AluJo SINE Alu 95 281 -31 816 268 74 4 chrX 132157649 132157880 -44816260 - MIR SINE MIR -12 250 4 780 230 35 65 chrX 132158060 132158201 -44815939 - MIR SINE MIR -37 225 92 1949 137 66 41 chrX 132158201 132158565 -44815575 + THE1C LTR MaLR 1 373 -2 780 230 35 65 chrX 132158565 132158653 -44815487 - MIR SINE MIR -170 92 3 919 218 16 5 chrX 132158661 132158854 -44815286 - MIR SINE MIR -62 200 6 1589 179 26 0 chrX 132159709 132159982 -44814158 - AluJo SINE Alu -27 285 6 2541 201 24 22 chrX 132159982 132160533 -44813607 - MER74A LTR ERVL -6 552 1 804 261 101 8 chrX 132160685 132160923 -44813217 + L2 LINE L2 1825 2084 -1230 1907 252 99 26 chrX 132160932 132161162 -44812978 + L2 LINE L2 2312 2524 -789 1293 163 5 27 chrX 132161162 132161383 -44812757 - MER20 DNA MER1_type -3 216 1 1907 252 99 26 chrX 132161383 132162070 -44812070 + L2 LINE L2 2524 3307 -6 2726 184 21 34 chrX 132162086 132162612 -44811528 + LTR53 LTR ERVL 1 519 0 540 255 56 43 chrX 132162649 132162880 -44811260 - L3 LINE CR1 -309 1268 1035 410 264 94 31 chrX 132162868 132163027 -44811113 + MIR SINE MIR 19 187 -75 * 306 256 12 0 chrX 132164271 132164353 -44809787 + MIR SINE MIR 79 161 -101 819 206 7 0 chrX 132164386 132164532 -44809608 + MER58B DNA MER1_type 194 340 -1 384 328 26 0 chrX 132164536 132164652 -44809488 + L2 LINE L2 2959 3077 -195 197 317 125 10 chrX 132165402 132165506 -44808634 + MIR SINE MIR 45 160 -102 405 333 78 0 chrX 132166883 132167012 -44807128 + MIR SINE MIR 49 187 -75 329 244 193 0 chrX 132167024 132167143 -44806997 - L2 LINE L2 0 3313 3172 429 70 0 0 chrX 132167419 132167476 -44806664 + (CA)n Simple_repeat Simple_repeat 2 58 0 234 123 14 55 chrX 132167494 132167567 -44806573 + (TATAA)n Simple_repeat Simple_repeat 5 74 0 249 322 78 0 chrX 132167587 132167677 -44806463 + MER5B DNA MER1_type 77 173 -5 184 289 36 24 chrX 132168260 132168343 -44805797 - L2 LINE L2 -9 3304 3221 498 295 40 19 chrX 132168406 132168728 -44805412 - L1M4 LINE L1 -1471 4675 4347 284 200 0 0 chrX 132168841 132168886 -44805254 + L2 LINE L2 3201 3245 -27 393 316 100 34 chrX 132169120 132169471 -44804669 - L1M4 LINE L1 -2194 3952 3579 594 279 45 6 chrX 132169488 132169667 -44804473 + MIR SINE MIR 3 188 -74 369 0 0 0 chrX 132169677 132169718 -44804422 + (TG)n Simple_repeat Simple_repeat 1 41 0 1713 170 45 3 chrX 132169761 132170050 -44804090 + AluJo SINE Alu 1 301 -11 315 283 129 72 chrX 132170123 132170402 -44803738 - L1M4 LINE L1 -2634 3512 3218 230 311 50 34 chrX 132170430 132170668 -44803472 - L1M4 LINE L1 -2982 3164 2923 517 201 166 7 chrX 132171315 132171454 -44802686 + MER103 DNA DNA 3 163 -3 21 0 0 0 chrX 132171639 132171660 -44802480 + AT_rich Low_complexity Low_complexity 1 21 0 406 351 156 36 chrX 132171851 132172580 -44801560 + L2 LINE L2 530 1346 -1968 331 304 110 31 chrX 132172618 132172809 -44801331 + L2 LINE L2 2854 3059 -213 194 331 83 41 chrX 132172860 132172981 -44801159 + L2 LINE L2 3146 3271 -1 1508 139 5 0 chrX 132173019 132173242 -44800898 - AluSq SINE Alu -89 224 1 309 353 74 42 chrX 132174292 132174482 -44799658 + L2 LINE L2 2966 3161 -111 1278 134 25 0 chrX 132174500 132174701 -44799439 - L1PB3 LINE L1 0 6154 5949 2975 204 37 2 chrX 132174760 132175303 -44798837 - MER68 LTR ERV1 0 562 1 304 361 66 14 chrX 132175333 132175546 -44798594 - MIR SINE MIR -34 228 5 225 313 73 21 chrX 132176157 132176253 -44797887 - L2 LINE L2 -22 3250 3150 875 280 4 12 chrX 132176370 132176620 -44797520 - MIR SINE MIR 0 262 15 223 332 93 14 chrX 132176907 132177121 -44797019 - L2 LINE L2 -1092 2222 1992 226 349 47 0 chrX 132177227 132177313 -44796827 + L2 LINE L2 3183 3272 0 2054 138 0 13 chrX 132177769 132178081 -44796059 + AluSx SINE Alu 1 308 -4 388 271 31 30 chrX 132178086 132178230 -44795910 + MIR3 SINE MIR 8 150 -76 223 287 3 0 chrX 132179752 132179807 -44794333 - L3 LINE CR1 -4 1579 1521 322 286 52 73 chrX 132180307 132180499 -44793641 + MER5A DNA MER1_type 2 189 0 392 256 0 68 chrX 132180807 132180924 -44793216 - MER5A DNA MER1_type -13 176 68 22 70 0 0 chrX 132181693 132181736 -44792404 + AT_rich Low_complexity Low_complexity 1 43 0 258 105 0 0 chrX 132181796 132181834 -44792306 + (TA)n Simple_repeat Simple_repeat 2 39 0 655 217 91 0 chrX 132181914 132182057 -44792083 + MIR SINE MIR 68 223 -39 953 305 28 58 chrX 132182137 132182705 -44791435 - L1MC/D LINE L1 -1985 5823 5273 743 318 71 37 chrX 132182858 132184072 -44790068 - L1MC/D LINE L1 -1092 5054 3800 475 285 132 41 chrX 132184072 132184412 -44789728 - MLT1H LTR MaLR 0 549 179 2413 59 0 13 chrX 132184554 132184858 -44789282 + AluY SINE Alu 1 300 -11 262 280 45 15 chrX 132184859 132184991 -44789149 - L1MC/D LINE L1 -2377 3769 3634 280 259 160 61 chrX 132185193 132185555 -44788585 - L1MC/D LINE L1 -2734 3412 2985 2208 43 4 0 chrX 132185555 132185813 -44788327 + L1PA8 LINE L1 5914 6172 0 280 259 160 61 chrX 132185813 132185955 -44788185 - L1MC/D LINE L1 -3161 2985 2858 2286 162 26 3 chrX 132185957 132186435 -44787705 - L1PA16 LINE L1 -1 6153 5640 26 30 0 0 chrX 132186453 132186486 -44787654 + AT_rich Low_complexity Low_complexity 1 33 0 344 317 86 36 chrX 132186542 132186837 -44787303 - L1MEd LINE L1 -1234 1256 866 479 311 36 32 chrX 132187537 132187814 -44786326 - MLT2E LTR ERVL 0 628 351 595 235 11 87 chrX 132187823 132188006 -44786134 - MLT2E LTR ERVL -459 169 1 216 390 25 8 chrX 132188259 132188377 -44785763 + MIR SINE MIR 20 139 -123 1169 266 100 8 chrX 132189384 132189764 -44784376 - LTR16A LTR ERVL -35 415 1 700 231 15 46 chrX 132189966 132190161 -44783979 + MIR SINE MIR 2 190 -72 240 290 14 103 chrX 132190226 132190371 -44783769 - L2 LINE L2 -17 3296 3165 877 223 152 42 chrX 132191046 132191506 -44782634 - MLT1G LTR MaLR -2 588 92 1173 277 29 55 chrX 132191563 132192087 -44782053 - MLT1H1 LTR MaLR -3 552 43 743 249 23 28 chrX 132194197 132194414 -44779726 + MIR SINE MIR 37 252 -10 572 138 0 0 chrX 132194456 132194536 -44779604 - L1PA16 LINE L1 -14 6152 6073 294 29 0 0 chrX 132195215 132195250 -44778890 + (TTCCC)n Simple_repeat Simple_repeat 2 36 0 1052 86 29 6 chrX 132195254 132195312 -44778828 + (TTTC)n Simple_repeat Simple_repeat 1 237 0 1052 86 29 6 chrX 132195312 132195486 -44778654 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 213 39 0 0 chrX 132197020 132197046 -44777094 + (CGG)n Simple_repeat Simple_repeat 3 28 0 246 246 0 16 chrX 132197634 132197695 -44776445 + (TG)n Simple_repeat Simple_repeat 1 60 0 220 250 0 0 chrX 132197810 132197858 -44776282 + C-rich Low_complexity Low_complexity 1 48 0 202 232 0 43 chrX 132198575 132198644 -44775496 + CT-rich Low_complexity Low_complexity 2 67 0 970 197 26 52 chrX 132203146 132203337 -44770803 - L1ME2 LINE L1 0 6164 5979 2384 96 0 6 chrX 132203337 132203649 -44770491 - AluSx SINE Alu -2 310 1 970 197 26 52 chrX 132203649 132203690 -44770450 - L1ME2 LINE L1 -185 5979 5938 426 278 62 28 chrX 132203975 132204151 -44769989 - MIR SINE MIR -15 247 66 301 234 135 102 chrX 132204457 132204701 -44769439 - MIR SINE MIR -6 256 5 312 266 160 72 chrX 132206345 132206676 -44767464 - L1M2 LINE L1 -6059 790 431 335 202 91 0 chrX 132206945 132207044 -44767096 - L1ME4a LINE L1 -1 6120 6013 215 130 37 19 chrX 132207584 132207638 -44766502 + (TAA)n Simple_repeat Simple_repeat 2 56 0 489 241 19 9 chrX 132208322 132208430 -44765710 - L2 LINE L2 -1 3312 3204 341 254 112 53 chrX 132208630 132208799 -44765341 + MER5A DNA MER1_type 11 189 0 217 291 50 89 chrX 132208807 132208986 -44765154 - MER5A DNA MER1_type 0 189 18 * 247 306 37 19 chrX 132208881 132208989 -44765151 + MER5A DNA MER1_type 80 189 0 28 29 0 0 chrX 132210558 132210593 -44763547 + AT_rich Low_complexity Low_complexity 1 35 0 501 197 25 25 chrX 132210599 132210721 -44763419 - L1MB3 LINE L1 -10 6173 6052 569 245 56 0 chrX 132210721 132210864 -44763276 - MIR3 SINE MIR -9 199 49 202 326 0 0 chrX 132211009 132211058 -44763082 - MIR3 SINE MIR -21 187 139 2022 151 46 117 chrX 132211492 132211790 -44762350 - L1MB3 LINE L1 -3 6180 5876 351 115 0 0 chrX 132211790 132211847 -44762293 - MSTA LTR MaLR -8 424 363 2022 151 46 117 chrX 132211847 132212070 -44762070 - L1MB3 LINE L1 -307 5876 5639 234 0 0 0 chrX 132212267 132212293 -44761847 + (TG)n Simple_repeat Simple_repeat 1 26 0 347 264 86 21 chrX 132212351 132212491 -44761649 + L2 LINE L2 3151 3299 -14 504 341 142 25 chrX 132213114 132213481 -44760659 - L2 LINE L2 -1 3271 2862 828 290 32 71 chrX 132214220 132214599 -44759541 - L2 LINE L2 0 3272 2909 256 375 0 0 chrX 132214760 132214864 -44759276 - L2 LINE L2 -527 2787 2684 252 265 60 12 chrX 132215070 132215153 -44758987 + MIR SINE MIR 48 134 -128 23 0 0 0 chrX 132216147 132216170 -44757970 + AT_rich Low_complexity Low_complexity 1 23 0 1028 257 56 18 chrX 132216580 132216693 -44757447 - L2 LINE L2 -3 3310 3203 282 56 0 0 chrX 132216693 132216729 -44757411 + (TG)n Simple_repeat Simple_repeat 2 37 0 1028 257 56 18 chrX 132216729 132216953 -44757187 - L2 LINE L2 -110 3203 2960 2376 184 26 10 chrX 132217577 132217995 -44756145 - MSTB LTR MaLR -1 425 1 238 346 15 15 chrX 132218378 132218514 -44755626 + MIR SINE MIR 79 214 -48 728 191 14 0 chrX 132219151 132219298 -44754842 + MIR SINE MIR 114 262 0 332 253 38 13 chrX 132219619 132219698 -44754442 + L2 LINE L2 3104 3184 -88 248 260 40 0 chrX 132220204 132220254 -44753886 + L2 LINE L2 3132 3183 -89 312 302 38 38 chrX 132221332 132221438 -44752702 - L2 LINE L2 0 3272 3167 359 272 54 0 chrX 132221505 132221597 -44752543 - L2 LINE L2 0 3272 3176 234 236 0 0 chrX 132221688 132221743 -44752397 - MIR SINE MIR -74 188 134 318 301 0 0 chrX 132221801 132221888 -44752252 - MIR SINE MIR -81 127 41 338 40 20 20 chrX 132222162 132222212 -44751928 - MADE1 DNA Mariner 0 80 31 304 198 99 12 chrX 132223024 132223105 -44751035 - MIR3 SINE MIR -32 176 89 3851 106 34 0 chrX 132223183 132223742 -44750398 + L1PA7 LINE L1 1 578 -5883 * 24304 89 4 7 chrX 132223733 132227951 -44746189 + L1PA7 LINE L1 2262 6464 -5 209 128 26 0 chrX 132227952 132227991 -44746149 + (TA)n Simple_repeat Simple_repeat 2 41 0 278 287 65 61 chrX 132228021 132228153 -44745987 - MIR SINE MIR -64 144 32 180 339 91 33 chrX 132228317 132228438 -44745702 + L2 LINE L2 3179 3306 -7 336 315 116 50 chrX 132230143 132230384 -44743756 - L2 LINE L2 -50 3222 2966 444 286 49 109 chrX 132230597 132230973 -44743167 - L2 LINE L2 -129 3143 2792 820 181 76 21 chrX 132231736 132231880 -44742260 + FRAM SINE Alu 1 152 -24 430 303 120 0 chrX 132231951 132232093 -44742047 + MER91A DNA MER1_type 33 191 -5 778 273 19 39 chrX 132232105 132232365 -44741775 + MIR SINE MIR 6 260 -2 23 33 0 0 chrX 132232980 132233010 -44741130 + AT_rich Low_complexity Low_complexity 1 30 0 516 323 151 58 chrX 132234038 132234403 -44739737 - L2 LINE L2 -2 3270 2872 768 180 14 7 chrX 132234538 132234677 -44739463 - MSTB2 LTR MaLR 0 457 318 614 184 0 10 chrX 132234668 132234771 -44739369 - MSTB2 LTR MaLR -341 116 15 * 1957 109 15 54 chrX 132234774 132234869 -44739271 - THE1-int LTR MaLR 0 1735 1638 2631 88 50 16 chrX 132234869 132235232 -44738908 - THE1C LTR MaLR 0 375 1 1957 109 15 54 chrX 132235232 132235504 -44738636 - THE1-int LTR MaLR -97 1638 1308 3425 234 39 45 chrX 132235518 132236444 -44737696 - MSTD-int LTR MaLR -726 1009 90 1216 164 20 141 chrX 132236525 132236630 -44737510 + MLT2C1 LTR ERVL 1 117 -280 1569 184 14 0 chrX 132236630 132236948 -44737192 - AluJo SINE Alu 0 322 1 1216 164 20 141 chrX 132236948 132237117 -44737023 + MLT2C1 LTR ERVL 117 226 -171 1233 29 0 0 chrX 132237117 132237254 -44736886 + L1PA3 LINE L1 6019 6155 0 1216 164 20 141 chrX 132237254 132237331 -44736809 + MLT2C1 LTR ERVL 226 311 -86 255 239 0 0 chrX 132237600 132237667 -44736473 + (TAG)n Simple_repeat Simple_repeat 1 67 0 261 283 115 18 chrX 132237675 132237788 -44736352 - MLT1K LTR MaLR -74 514 391 9621 93 12 4 chrX 132237802 132239880 -44734260 - L1PA7 LINE L1 0 6469 4383 19941 104 4 7 chrX 132239880 132242780 -44731360 - L1PA7 LINE L1 -2022 4439 1548 5438 113 10 2 chrX 132242767 132243552 -44730588 - L1PA7 LINE L1 -5669 792 2 * 525 183 0 11 chrX 132243563 132243656 -44730484 - MSTD-int LTR MaLR -1642 93 2 1334 233 46 16 chrX 132243656 132243990 -44730150 - MSTD LTR MaLR -2 394 1 602 288 99 5 chrX 132244073 132244230 -44729910 + MIR SINE MIR 20 204 -58 195 42 0 0 chrX 132244230 132244254 -44729886 + (TAA)n Simple_repeat Simple_repeat 2 25 0 602 288 99 5 chrX 132244254 132244308 -44729832 + MIR SINE MIR 204 251 -11 192 262 0 0 chrX 132244609 132244651 -44729489 + MER5A DNA MER1_type 79 120 -69 985 227 151 20 chrX 132244756 132245055 -44729085 - MLT1E LTR MaLR -248 345 8 331 242 22 0 chrX 132245225 132245316 -44728824 + MER69 DNA AcHobo 2434 2526 0 644 276 21 66 chrX 132246274 132246517 -44727623 + MIR SINE MIR 31 262 0 1519 186 111 54 chrX 132247280 132247722 -44726418 - MLT1C LTR MaLR 0 467 1 208 376 102 25 chrX 132247827 132247984 -44726156 - MIR3 SINE MIR -7 201 33 499 314 42 82 chrX 132248262 132248641 -44725499 - L2 LINE L2 -55 3217 2854 4083 157 93 38 chrX 132249318 132250321 -44723819 - MER106B DNA MER1_type -1 1058 1 527 194 56 9 chrX 132250619 132250727 -44723413 + L2 LINE L2 3150 3262 -10 201 74 0 0 chrX 132252727 132252754 -44721386 + (T)n Simple_repeat Simple_repeat 1 27 0 237 145 210 0 chrX 132253370 132253432 -44720708 + MLT1B LTR MaLR 22 96 -371 198 0 0 0 chrX 132253440 132253462 -44720678 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 820 187 88 70 chrX 132253522 132253806 -44720334 + MLT1B LTR MaLR 102 390 0 385 129 0 0 chrX 132254158 132254220 -44719920 - L1PB1 LINE L1 -1 6150 6089 7240 47 0 0 chrX 132254231 132255421 -44718719 - L1PA5 LINE L1 -3 6151 4960 721 186 19 0 chrX 132255886 132256047 -44718093 - L1MA10 LINE L1 -2 6332 6169 1199 157 14 136 chrX 132256145 132256558 -44717582 + Charlie1 DNA MER1_type 2343 2705 -56 392 244 111 17 chrX 132256701 132256881 -44717259 - L2 LINE L2 -556 2758 2562 236 338 27 0 chrX 132258454 132258528 -44715612 - L2 LINE L2 -530 2784 2709 628 278 67 16 chrX 132258611 132258805 -44715335 - MIR SINE MIR -55 207 4 396 349 179 26 chrX 132259486 132259989 -44714151 - L2 LINE L2 -3 3269 2679 * 1293 261 75 27 chrX 132259987 132260225 -44713915 - L2 LINE L2 -4 3309 3084 279 0 0 0 chrX 132260225 132260256 -44713884 + (TG)n Simple_repeat Simple_repeat 2 32 0 473 0 18 0 chrX 132260263 132260320 -44713820 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 1293 261 75 27 chrX 132260320 132260750 -44713390 - L2 LINE L2 -234 3079 2636 435 287 20 53 chrX 132260806 132261053 -44713087 - L2 LINE L2 -640 2674 2436 487 186 142 0 chrX 132261054 132261167 -44712973 - MLT1D LTR MaLR -376 129 1 405 135 34 0 chrX 132261352 132261441 -44712699 + (TA)n Simple_repeat Simple_repeat 1 92 0 13059 151 12 3 chrX 132261441 132264518 -44709622 - L1PA11 LINE L1 -6 6168 3059 10417 223 20 20 chrX 132264518 132268144 -44705996 - L1PA12 LINE L1 -2888 4696 10 1116 213 32 0 chrX 132268180 132268396 -44705744 + MIR SINE MIR 9 231 -31 184 328 16 0 chrX 132268413 132268477 -44705663 + L2 LINE L2 3203 3267 -5 254 347 77 32 chrX 132268882 132269130 -44705010 - L2 LINE L2 -548 2766 2508 458 247 16 0 chrX 132269133 132269250 -44704890 + MIR SINE MIR 25 149 -62 289 283 29 111 chrX 132269342 132269621 -44704519 - MLT1K LTR MaLR -18 570 315 414 121 0 0 chrX 132270474 132270540 -44703600 + (ATG)n Simple_repeat Simple_repeat 3 68 0 362 286 155 10 chrX 132270666 132270876 -44703264 + MIR SINE MIR 16 260 -2 495 314 0 23 chrX 132270921 132271093 -44703047 + MIR SINE MIR 82 249 -13 591 314 55 1 chrX 132271102 132271288 -44702852 + MIR SINE MIR 37 229 -33 1314 209 52 75 chrX 132271410 132271888 -44702252 + MLT1C LTR MaLR 1 467 0 247 313 196 36 chrX 132272388 132272500 -44701640 - MIR SINE MIR -84 178 49 255 311 37 127 chrX 132272626 132272909 -44701231 + L2 LINE L2 2995 3251 -21 357 117 0 0 chrX 132272909 132272969 -44701171 + (TGGA)n Simple_repeat Simple_repeat 3 62 0 255 311 37 127 chrX 132272969 132272984 -44701156 + L2 LINE L2 3251 3266 -6 237 300 0 0 chrX 132273200 132273260 -44700880 + MIR SINE MIR 181 240 -22 437 344 36 31 chrX 132273577 132273769 -44700371 + MIR3 SINE MIR 16 208 0 233 262 49 0 chrX 132274096 132274157 -44699983 - MIR SINE MIR -108 154 91 1259 206 44 16 chrX 132274401 132274649 -44699491 - AluJo SINE Alu -11 301 47 662 340 36 7 chrX 132274894 132275173 -44698967 + MLT1K LTR MaLR 12 298 -290 245 294 0 43 chrX 132275874 132275966 -44698174 - L2 LINE L2 -1 3271 3184 299 183 33 0 chrX 132276014 132276074 -44698066 + MIR SINE MIR 75 136 -126 1085 316 81 31 chrX 132276505 132277206 -44696934 + L2 LINE L2 2334 3077 -195 342 0 0 0 chrX 132277218 132277256 -44696884 + (TC)n Simple_repeat Simple_repeat 1 38 0 297 0 0 0 chrX 132277255 132277288 -44696852 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 243 250 38 25 chrX 132277621 132277701 -44696439 + L2 LINE L2 2575 2655 -659 247 288 41 0 chrX 132278099 132278172 -44695968 + L2 LINE L2 3234 3309 -4 1259 136 0 123 chrX 132278235 132278543 -44695597 - MLT1B LTR MaLR 0 390 121 278 260 70 40 chrX 132278761 132278861 -44695279 + MIR SINE MIR 34 136 -72 910 249 120 14 chrX 132279170 132279588 -44694552 - L1MC5 LINE L1 -48 7913 7452 274 303 53 0 chrX 132279603 132279679 -44694461 + L2 LINE L2 3191 3270 -2 464 330 115 9 chrX 132281452 132281670 -44692470 + MIR SINE MIR 18 258 -4 418 191 74 164 chrX 132281781 132282037 -44692103 + MER112 DNA MER1_type 28 260 0 306 0 0 0 chrX 132282315 132282349 -44691791 + (TG)n Simple_repeat Simple_repeat 2 35 0 227 287 3 0 chrX 132284012 132284067 -44690073 - L3 LINE CR1 -4 1579 1521 332 286 52 73 chrX 132284567 132284759 -44689381 + MER5A DNA MER1_type 2 189 0 * 377 293 67 27 chrX 132284617 132284767 -44689373 - MER5A DNA MER1_type -29 160 5 397 256 0 68 chrX 132285067 132285184 -44688956 - MER5A DNA MER1_type -13 176 68 22 70 0 0 chrX 132285953 132285996 -44688144 + AT_rich Low_complexity Low_complexity 1 43 0 258 105 0 0 chrX 132286056 132286094 -44688046 + (TA)n Simple_repeat Simple_repeat 2 39 0 665 217 91 0 chrX 132286174 132286317 -44687823 + MIR SINE MIR 68 223 -39 752 318 21 51 chrX 132286397 132286963 -44687177 - L1MC/D LINE L1 -1985 5823 5275 14428 161 14 10 chrX 132287146 132292634 -44681506 + L1MA2 LINE L1 2154 7663 -60 1226 274 71 8 chrX 132292641 132293021 -44681119 + MLT1F1 LTR MaLR 163 566 -1 21 0 0 0 chrX 132293138 132293159 -44680981 + AT_rich Low_complexity Low_complexity 1 21 0 943 237 158 0 chrX 132293185 132293463 -44680677 - MER58B DNA MER1_type -14 327 6 24 53 0 0 chrX 132294124 132294162 -44679978 + AT_rich Low_complexity Low_complexity 1 38 0 344 299 74 74 chrX 132294285 132294464 -44679676 + HAL1 LINE L1 1123 1304 -1203 2129 118 13 0 chrX 132294464 132294769 -44679371 + AluSq SINE Alu 1 309 -4 344 299 74 74 chrX 132294769 132294820 -44679320 + HAL1 LINE L1 1303 1353 -1154 447 343 78 44 chrX 132295691 132296447 -44677693 + L1M4 LINE L1 2234 3015 -3131 570 191 82 57 chrX 132296448 132296766 -44677374 + L1ME LINE L1 785 1123 -4957 5337 252 102 22 chrX 132296794 132298192 -44675948 + L1M4 LINE L1 2651 3936 -2210 7067 100 4 9 chrX 132298192 132299166 -44674974 + LTR5 LTR ERVK 1 969 0 5337 252 102 22 chrX 132299166 132300168 -44673972 + L1M4 LINE L1 3936 5242 -904 2070 112 10 23 chrX 132300212 132300516 -44673624 - AluSg SINE Alu -10 300 1 456 253 199 0 chrX 132300560 132300706 -44673434 + L2 LINE L2 3139 3313 0 1298 124 11 9 chrX 132301154 132301621 -44672519 + L1PBa LINE L1 2559 3085 -3777 * 2851 128 0 0 chrX 132301618 132302040 -44672100 + L1PB1 LINE L1 1052 1473 -5390 * 13411 179 11 3 chrX 132302038 132305407 -44668733 + L1PB1 LINE L1 3099 6498 -369 1670 150 8 0 chrX 132305407 132305654 -44668486 + AluSx SINE Alu 43 291 -21 13411 179 11 3 chrX 132305654 132306020 -44668120 + L1PB1 LINE L1 6498 6860 -7 852 162 0 0 chrX 132306034 132306176 -44667964 + L1PA16 LINE L1 6016 6157 -9 2608 214 121 9 chrX 132306191 132307049 -44667091 + L1ME2 LINE L1 5188 6138 -26 36 0 0 0 chrX 132307051 132307087 -44667053 + AT_rich Low_complexity Low_complexity 1 36 0 580 266 49 22 chrX 132307297 132307481 -44666659 + MIR SINE MIR 20 208 -54 200 289 0 0 chrX 132307546 132307591 -44666549 + MIR3 SINE MIR 163 207 -1 315 351 126 47 chrX 132307597 132307788 -44666352 + L2 LINE L2 3051 3256 -16 230 274 0 0 chrX 132308464 132308537 -44665603 + MER70B LTR ERVL 487 559 -19 423 253 82 94 chrX 132308686 132308809 -44665331 - MIR SINE MIR -77 185 63 2490 42 0 26 chrX 132308809 132309119 -44665021 + AluY SINE Alu 1 302 -9 423 253 82 94 chrX 132309119 132309165 -44664975 - MIR SINE MIR -199 63 18 281 221 240 29 chrX 132309275 132309379 -44664761 - MIR SINE MIR -12 250 125 21195 173 18 19 chrX 132309551 132309568 -44664572 - L1P5 LINE L1 -725 6850 6834 4564 87 27 3 chrX 132309568 132310235 -44663905 - L1MA1 LINE L1 0 6302 5620 21195 173 18 19 chrX 132310235 132317056 -44657084 - L1P5 LINE L1 -741 6834 16 181 333 33 0 chrX 132317140 132317200 -44656940 + MIR SINE MIR 77 138 -70 677 176 0 22 chrX 132317608 132317744 -44656396 - L1PB4 LINE L1 -1 6155 6023 1474 104 13 9 chrX 132317765 132317996 -44656144 - L1MA5A LINE L1 -3 6294 6063 1055 291 79 28 chrX 132318060 132318731 -44655409 - L1MC4a LINE L1 -1750 6058 5354 330 300 95 15 chrX 132318740 132318940 -44655200 - L1MC4a LINE L1 -813 5333 5118 4598 98 123 127 chrX 132319019 132320453 -44653687 - pTR5 LTR ERV1 0 2438 379 293 318 8 8 chrX 132320458 132320584 -44653556 - L1P LINE L1 -1120 5026 4901 267 31 0 0 chrX 132320653 132320685 -44653455 + (TG)n Simple_repeat Simple_repeat 1 32 0 454 233 21 85 chrX 132321138 132321327 -44652813 + L1ME4a LINE L1 5944 6120 -1 293 237 65 21 chrX 132321429 132321522 -44652618 - MLT1J2 LTR MaLR -5 445 349 743 225 19 12 chrX 132321543 132321728 -44652412 - MLT1J2 LTR MaLR -251 195 13 557 341 100 0 chrX 132322813 132323033 -44651107 - MIR SINE MIR 0 262 21 664 252 74 23 chrX 132323235 132323544 -44650596 - L1ME4a LINE L1 -223 5898 5574 957 113 0 0 chrX 132323644 132323777 -44650363 - FLAM_C SINE Alu 0 133 1 1705 187 0 7 chrX 132324270 132324580 -44649560 - AluJo SINE Alu -4 308 1 716 269 59 50 chrX 132324587 132324806 -44649334 - MIR SINE MIR -13 249 29 270 305 31 0 chrX 132325061 132325163 -44648977 - MIR SINE MIR -65 143 33 225 94 0 0 chrX 132326286 132326318 -44647822 + (CA)n Simple_repeat Simple_repeat 2 33 0 675 293 52 31 chrX 132326356 132326585 -44647555 - MIR SINE MIR -17 245 12 366 322 75 14 chrX 132326715 132326861 -44647279 - MIR SINE MIR -76 186 32 260 232 24 24 chrX 132327005 132327087 -44647053 + GA-rich Low_complexity Low_complexity 1 82 0 260 309 138 0 chrX 132327198 132327321 -44646819 - MIR SINE MIR -6 256 117 684 289 17 39 chrX 132327660 132327798 -44646342 + MIR SINE MIR 24 157 -105 1188 168 34 42 chrX 132327798 132328036 -44646104 + MER46A DNA MER2_type 1 236 0 684 289 17 39 chrX 132328036 132328129 -44646011 + MIR SINE MIR 157 250 -12 1536 239 8 19 chrX 132328135 132328504 -44645636 - MLT1A1 LTR MaLR 0 365 1 250 305 74 0 chrX 132328518 132328613 -44645527 - L2 LINE L2 -660 2654 2553 322 246 0 0 chrX 132330472 132330541 -44643599 + MER96 DNA MER1_type? 91 159 -16 316 234 26 0 chrX 132330474 132330551 -44643589 - MER96 DNA MER1_type? -92 83 5 * 3184 201 74 59 chrX 132330551 132331535 -44642605 + L1MC4 LINE L1 7043 8041 -1 561 282 86 46 chrX 132331562 132332210 -44641930 + L1M4 LINE L1 2946 3619 -2527 296 306 16 0 chrX 132332256 132332377 -44641763 + L1M4 LINE L1 4724 4846 -1300 1770 130 49 89 chrX 132332393 132332784 -44641356 - THE1C LTR MaLR 0 375 1 7019 125 222 9 chrX 132332784 132334189 -44639951 - THE1C-int LTR MaLR 0 1651 2 1798 134 87 36 chrX 132334190 132334547 -44639593 - THE1C LTR MaLR 0 375 1 1065 182 59 123 chrX 132334707 132335097 -44639043 + MLT1A1 LTR MaLR 1 365 0 234 91 0 0 chrX 132335118 132335151 -44638989 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 750 237 107 14 chrX 132335624 132335839 -44638301 + MIR SINE MIR 12 246 -16 274 169 155 14 chrX 132335910 132335981 -44638159 - L1MC4 LINE L1 -1 8041 7961 269 376 17 0 chrX 132336101 132336218 -44637922 + MIR SINE MIR 2 120 -142 215 253 0 11 chrX 132337036 132337127 -44637013 + (TA)n Simple_repeat Simple_repeat 1 90 0 248 197 0 14 chrX 132337186 132337257 -44636883 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 291 324 133 23 chrX 132337329 132337502 -44636638 - MIR3 SINE MIR -15 193 2 2708 16 7 3 chrX 132338019 132338329 -44635811 - AluY SINE Alu 0 311 1 2247 172 91 22 chrX 132338492 132338956 -44635184 - MLT1D LTR MaLR -9 496 1 326 113 0 19 chrX 132339702 132339755 -44634385 + L1MA9 LINE L1 6100 6151 -161 252 0 0 0 chrX 132339755 132339783 -44634357 + (CA)n Simple_repeat Simple_repeat 1 28 0 338 250 18 62 chrX 132340641 132340753 -44633387 + L2 LINE L2 3180 3286 -27 201 74 0 0 chrX 132341506 132341533 -44632607 + (CTTTG)n Simple_repeat Simple_repeat 1 27 0 546 248 55 67 chrX 132342197 132342451 -44631689 - MIR SINE MIR -10 252 2 2054 303 76 44 chrX 132345652 132347018 -44627122 + L2 LINE L2 1881 3272 0 296 350 0 0 chrX 132347038 132347141 -44626999 + L2 LINE L2 3169 3271 -42 380 189 15 235 chrX 132347593 132347853 -44626287 - MIR SINE MIR -13 249 47 212 302 0 0 chrX 132347922 132347985 -44626155 + MIR3 SINE MIR 116 178 -30 552 309 52 10 chrX 132348398 132348592 -44625548 - MIR SINE MIR -20 242 41 372 303 168 0 chrX 132348607 132348762 -44625378 + MIR SINE MIR 65 245 -17 456 189 11 0 chrX 132349808 132349898 -44624242 - MIR SINE MIR -31 231 141 265 245 186 10 chrX 132349893 132349995 -44624145 + L2 LINE L2 2742 2861 -453 * 255 328 97 30 chrX 132350188 132350322 -44623818 - MIR3 SINE MIR -63 145 3 669 274 234 24 chrX 132350749 132351121 -44623019 + MLT1J2 LTR MaLR 1 450 0 251 239 150 62 chrX 132351774 132351887 -44622253 - MIR SINE MIR -66 142 20 208 298 88 0 chrX 132352196 132352253 -44621887 - L2 LINE L2 -2 3270 3209 294 248 95 15 chrX 132352535 132352672 -44621468 - L1ME4a LINE L1 -4 6117 5970 1679 204 7 7 chrX 132352746 132353055 -44621085 - AluSx SINE Alu -3 309 1 389 333 35 0 chrX 132353626 132353767 -44620373 + MIR3 SINE MIR 54 199 -9 238 213 74 74 chrX 132353989 132354097 -44620043 - HsTC2 DNA Tc2 -2 1896 1789 201 296 102 31 chrX 132354190 132354288 -44619852 - MIR3 SINE MIR -54 154 50 3791 243 34 29 chrX 132354312 132355054 -44619086 + L1MB3 LINE L1 16 753 -5789 432 0 0 0 chrX 132355054 132355102 -44619038 + (CA)n Simple_repeat Simple_repeat 2 49 0 1576 127 4 0 chrX 132355111 132355340 -44618800 + MER30 DNA MER1_type 1 230 0 3791 243 34 29 chrX 132355340 132355778 -44618362 + L1MB3 LINE L1 760 1212 -5330 2871 232 39 21 chrX 132355767 132355938 -44618202 + L1MB3 LINE L1 4183 4349 -2295 * 1426 195 87 35 chrX 132355938 132356307 -44617833 - MLT1B LTR MaLR -2 388 1 2871 232 39 21 chrX 132356307 132356669 -44617471 + L1MB3 LINE L1 4349 4703 -1941 2448 101 27 5 chrX 132356669 132357036 -44617104 + THE1C LTR MaLR 1 375 0 2871 232 39 21 chrX 132357036 132357392 -44616748 + L1MB3 LINE L1 4703 5089 -1555 824 201 104 0 chrX 132357392 132357556 -44616584 + AluJo SINE Alu 113 293 -19 734 231 172 12 chrX 132357556 132357822 -44616318 + L1MB3 LINE L1 5102 5431 -1213 2094 160 35 0 chrX 132357822 132358196 -44615944 - L1MA4 LINE L1 -7 6293 5907 734 231 172 12 chrX 132358196 132358254 -44615886 + L1MB3 LINE L1 5431 5478 -1166 502 200 0 57 chrX 132358281 132358311 -44615829 - MER2 DNA MER2_type -246 99 69 2541 48 0 10 chrX 132358311 132358625 -44615515 + AluY SINE Alu 1 311 0 502 200 0 57 chrX 132358625 132358699 -44615441 - MER2 DNA MER2_type -276 69 1 293 181 36 0 chrX 132358699 132358782 -44615358 + L1MB3 LINE L1 5476 5561 -1083 2319 149 40 7 chrX 132358809 132359065 -44615075 + L1MB3 LINE L1 5851 6097 -584 2332 66 7 0 chrX 132359065 132359352 -44614788 + AluSc SINE Alu 1 289 -20 2319 149 40 7 chrX 132359352 132359797 -44614343 + L1MB3 LINE L1 6097 6680 -1 391 220 50 10 chrX 132359802 132359902 -44614238 + L1MC4 LINE L1 7817 7920 -122 209 231 0 0 chrX 132359948 132359987 -44614153 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 321 211 68 116 chrX 132359987 132360134 -44614006 + L1MC4 LINE L1 7902 8041 -1 266 288 30 0 chrX 132360645 132360711 -44613429 - L2 LINE L2 -65 3207 3140 625 270 10 61 chrX 132360940 132361136 -44613004 - MER5A DNA MER1_type 0 189 4 228 35 0 0 chrX 132361264 132361293 -44612847 + (TG)n Simple_repeat Simple_repeat 2 30 0 437 261 155 22 chrX 132361295 132361521 -44612619 - MIR SINE MIR -3 259 4 6034 123 40 13 chrX 132361675 132363106 -44611034 - L1MA2 LINE L1 -1 6303 4838 618 308 17 42 chrX 132363123 132363360 -44610780 - MIR SINE MIR -19 243 13 13699 130 32 14 chrX 132363950 132366319 -44607821 + Tigger1 DNA MER2_type 2 2413 -5 32 0 0 0 chrX 132366435 132366467 -44607673 + AT_rich Low_complexity Low_complexity 1 32 0 231 189 75 0 chrX 132366563 132366616 -44607524 + Charlie2 DNA MER1_type 92 148 -2634 34 55 0 0 chrX 132366656 132366711 -44607429 + AT_rich Low_complexity Low_complexity 1 55 0 2053 129 3 0 chrX 132366717 132367012 -44607128 + AluJo SINE Alu 4 299 -13 3379 151 53 33 chrX 132367014 132367734 -44606406 - L1MA8 LINE L1 -29 6262 5529 1376 221 156 9 chrX 132367734 132368454 -44605686 + Charlie2 DNA MER1_type 1980 2859 -3 749 299 60 9 chrX 132368523 132369054 -44605086 - L1MEd LINE L1 -3442 2773 2216 312 364 66 21 chrX 132369074 132369360 -44604780 - L1MEd LINE L1 -4169 2227 1929 600 195 208 7 chrX 132369434 132369583 -44604557 + MIR SINE MIR 2 180 -82 798 291 76 18 chrX 132369786 132370365 -44603775 - L1MEd LINE L1 -856 1720 1008 368 305 78 45 chrX 132370914 132371183 -44602957 - L1MEd LINE L1 -5783 422 145 2167 101 14 3 chrX 132371670 132371958 -44602182 - AluSx SINE Alu -13 299 9 22 0 0 0 chrX 132372093 132372115 -44602025 + AT_rich Low_complexity Low_complexity 1 22 0 2055 100 30 0 chrX 132372222 132372531 -44601609 + AluSx SINE Alu 4 320 0 1875 133 6 69 chrX 132372761 132373093 -44601047 + AluSx SINE Alu 1 311 -1 679 298 19 23 chrX 132373481 132373743 -44600397 - MIR SINE MIR 0 262 2 2380 93 0 6 chrX 132373832 132374144 -44599996 - AluSg SINE Alu 0 310 1 627 286 133 17 chrX 132374311 132374545 -44599595 - MIR SINE MIR 0 262 2 35 24 0 0 chrX 132375367 132375409 -44598731 + AT_rich Low_complexity Low_complexity 1 42 0 39831 58 3 1 chrX 132375409 132381529 -44592611 - L1PA5 LINE L1 -8 6146 11 189 107 0 0 chrX 132381680 132381708 -44592432 + (T)n Simple_repeat Simple_repeat 1 28 0 189 94 0 0 chrX 132381762 132381794 -44592346 + (A)n Simple_repeat Simple_repeat 1 32 0 973 260 20 5 chrX 132381961 132382357 -44591783 - L1MDb LINE L1 -2990 3550 3149 9642 227 47 25 chrX 132382357 132386233 -44587907 + L1MD2 LINE L1 12 3969 -2571 2430 239 91 38 chrX 132386228 132386771 -44587369 - L1MDb LINE L1 -4391 2149 1636 * 2341 93 0 0 chrX 132386771 132387062 -44587078 - AluSg SINE Alu -19 291 1 2430 239 91 38 chrX 132387062 132387737 -44586403 - L1MDb LINE L1 -4904 1636 911 331 391 40 36 chrX 132388265 132388567 -44585573 - L1MDb LINE L1 -6213 327 25 329 292 15 0 chrX 132388578 132388708 -44585432 - L1MEc LINE L1 -4536 2586 2455 * 3528 256 52 51 chrX 132388707 132389126 -44585014 - L1MEc LINE L1 -4956 1467 1050 2002 196 73 5 chrX 132389126 132389525 -44584615 + MSTB LTR MaLR 1 426 0 3528 256 52 51 chrX 132389525 132389941 -44584199 - L1MEc LINE L1 -5373 1050 636 2129 156 0 0 chrX 132389941 132390249 -44583891 - AluSx SINE Alu 0 312 5 3528 256 52 51 chrX 132390249 132390731 -44583409 - L1MEc LINE L1 -5787 636 145 2012 191 33 37 chrX 132390731 132391161 -44582979 + MSTB1 LTR MaLR 3 430 -2 3528 256 52 51 chrX 132391161 132391284 -44582856 - L1MEc LINE L1 -6278 145 24 325 144 48 77 chrX 132391298 132391402 -44582738 - L1ME LINE L1 -449 5672 5572 680 236 16 5 chrX 132392426 132392617 -44581523 + L1MD2 LINE L1 4240 4432 -2108 252 0 0 0 chrX 132392741 132392769 -44581371 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6325 44 2 5 chrX 132392769 132393583 -44580557 - L1PA7 LINE L1 -18 6136 5325 * 14568 94 5 1 chrX 132393582 132396021 -44578119 + L1P LINE L1 2571 5016 -1130 2384 49 0 0 chrX 132396017 132396321 -44577819 - L1PA4 LINE L1 -334 5821 5518 * 2908 18 6 3 chrX 132396321 132396661 -44577479 + L1PA4 LINE L1 5812 6154 -1 1979 83 13 0 chrX 132396661 132396961 -44577179 + L1P LINE L1 5005 5308 -838 * 4637 208 44 43 chrX 132396953 132397687 -44576453 + L1MD2 LINE L1 4417 5148 -1605 348 98 0 0 chrX 132397687 132397738 -44576402 + Alu SINE Alu 247 297 -4 4637 208 44 43 chrX 132397738 132399282 -44574858 + L1MD2 LINE L1 5148 6749 -4 3905 140 32 34 chrX 132399718 132400445 -44573695 + LTR8A LTR ERV1 1 725 -2 382 207 0 69 chrX 132401132 132401219 -44572921 + FRAM SINE Alu 73 146 -20 4949 143 50 17 chrX 132401311 132402310 -44571830 + L1MA9 LINE L1 5281 6312 0 281 269 148 27 chrX 132402776 132402925 -44571215 + L2 LINE L2 2258 2424 -890 650 266 54 11 chrX 132403110 132403294 -44570846 - MIR SINE MIR 0 262 71 392 259 48 48 chrX 132403313 132403502 -44570638 - MER5A DNA MER1_type 0 189 1 270 381 28 22 chrX 132403506 132403687 -44570453 + L2 LINE L2 2679 2860 -454 701 343 94 6 chrX 132403727 132404045 -44570095 - L2 LINE L2 0 3272 2927 1276 190 113 84 chrX 132404205 132404704 -44569436 + MLT1E1 LTR MaLR 94 654 0 668 261 86 71 chrX 132404804 132405198 -44568942 + LTR33A LTR ERVL 124 523 0 355 332 60 13 chrX 132405215 132405447 -44568693 - L2 LINE L2 -804 2510 2268 1300 277 55 30 chrX 132405488 132405921 -44568219 + L2 LINE L2 2823 3266 -47 807 314 118 27 chrX 132406017 132406610 -44567530 - L2 LINE L2 -1103 2211 1565 2139 94 0 4 chrX 132406896 132407171 -44566969 - AluSp SINE Alu 0 313 40 450 272 83 35 chrX 132407911 132408249 -44565891 - L1M4 LINE L1 -2127 4019 3666 411 274 107 51 chrX 132408324 132408678 -44565462 - L1M4 LINE L1 -2591 3555 3182 825 363 52 10 chrX 132408686 132409183 -44564957 + L2 LINE L2 2504 3031 -282 310 233 30 8 chrX 132409199 132409332 -44564808 + (TTATA)n Simple_repeat Simple_repeat 1 136 0 612 181 60 36 chrX 132409361 132409527 -44564613 - MER3 DNA MER1_type -86 123 1 427 338 24 24 chrX 132409598 132409891 -44564249 - L1M4 LINE L1 -2979 3167 2875 758 251 23 14 chrX 132409903 132410122 -44564018 + L1M4 LINE L1 16 236 -6306 13175 136 21 10 chrX 132410136 132410603 -44563537 - Tigger7 DNA MER2_type -8 2479 2019 2032 160 33 30 chrX 132410603 132410966 -44563174 + THE1B LTR MaLR 1 364 0 13175 136 21 10 chrX 132410966 132412732 -44561408 - Tigger7 DNA MER2_type -468 2019 220 820 196 10 20 chrX 132412735 132412939 -44561201 + L1M4 LINE L1 821 1022 -5520 330 26 0 0 chrX 132413126 132413165 -44560975 + (TG)n Simple_repeat Simple_repeat 1 39 0 218 279 0 0 chrX 132413282 132413350 -44560790 + T-rich Low_complexity Low_complexity 1 68 0 696 234 18 12 chrX 132413640 132413807 -44560333 + MLT1F1 LTR MaLR 1 168 -399 10812 175 7 7 chrX 132413815 132415726 -44558414 + L1M1 LINE L1 22 1931 -5634 219 211 0 0 chrX 132418385 132418423 -44555717 + (CCG)n Simple_repeat Simple_repeat 2 39 0 7625 30 0 0 chrX 132418561 132420036 -44554104 - L1PA3 LINE L1 0 6155 4682 837 298 63 0 chrX 132420244 132420491 -44553649 - L2 LINE L2 -331 2982 2723 3584 165 17 10 chrX 132420525 132421259 -44552881 - L1PA13 LINE L1 -4509 3065 2384 6355 178 58 21 chrX 132421261 132422515 -44551625 - L1PA13 LINE L1 -6268 1313 14 1521 239 2 22 chrX 132422522 132422937 -44551203 - L1M4c LINE L1 -4559 1825 1419 280 153 0 17 chrX 132422952 132423011 -44551129 + L1MB8 LINE L1 4651 4708 -1438 503 184 10 0 chrX 132423030 132423128 -44551012 + L1MB8 LINE L1 5439 5537 -647 1569 145 31 43 chrX 132423135 132423452 -44550688 + L1MB8 LINE L1 5854 6168 -10 212 0 36 0 chrX 132423452 132423480 -44550660 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 41333 48 3 1 chrX 132423487 132429613 -44544527 - L1PA4 LINE L1 -18 6137 1 13628 32 3 0 chrX 132429618 132431355 -44542785 + L1P LINE L1 2692 4433 -1713 412 282 108 36 chrX 132431880 132432267 -44541873 + L1ME LINE L1 5409 5823 -298 40 21 0 0 chrX 132432298 132432345 -44541795 + AT_rich Low_complexity Low_complexity 1 47 0 347 182 0 0 chrX 132432882 132432937 -44541203 + Tigger5 DNA MER2_type 1 55 -2268 * 406 151 14 14 chrX 132432906 132432979 -44541161 + Tigger5 DNA MER2_type 2251 2323 0 375 293 61 55 chrX 132433115 132433305 -44540835 + L1M4c LINE L1 46 233 -2008 216 0 0 0 chrX 132433305 132433329 -44540811 + (TA)n Simple_repeat Simple_repeat 1 24 0 375 293 61 55 chrX 132433329 132433618 -44540522 + L1M4c LINE L1 233 1406 -835 522 212 15 121 chrX 132434026 132434290 -44539850 + MER106B DNA MER1_type 1 1059 0 634 227 140 74 chrX 132434328 132434867 -44539273 + L1MC5 LINE L1 6488 7070 -891 3533 229 41 29 chrX 132434914 132435868 -44538272 + L1M4 LINE L1 5 969 -5573 530 171 0 0 chrX 132435877 132435982 -44538158 + L1MB7 LINE L1 6073 6177 -7 504 211 24 42 chrX 132436104 132436270 -44537870 + L1MC5 LINE L1 7368 7530 -431 270 174 110 55 chrX 132437438 132437547 -44536593 - L2 LINE L2 -5 3308 3194 237 211 19 0 chrX 132437969 132438021 -44536119 + L2 LINE L2 3218 3270 -2 267 320 21 10 chrX 132438627 132438724 -44535416 + L2 LINE L2 3174 3271 -1 339 257 35 18 chrX 132438758 132438871 -44535269 + MIR SINE MIR 30 144 -64 243 345 0 12 chrX 132439762 132439846 -44534294 - MIR3 SINE MIR -21 187 105 319 305 51 30 chrX 132440299 132440535 -44533605 + L1ME LINE L1 5421 5661 -460 231 114 0 0 chrX 132441021 132441056 -44533084 + (CCA)n Simple_repeat Simple_repeat 1 35 0 847 186 29 6 chrX 132441086 132441258 -44532882 + MER3 DNA MER1_type 7 182 -27 489 213 52 29 chrX 132441242 132441378 -44532762 + MER3 DNA MER1_type 71 209 0 * 24 0 0 0 chrX 132441755 132441779 -44532361 + AT_rich Low_complexity Low_complexity 1 24 0 187 227 106 30 chrX 132443809 132443875 -44530265 - L2 LINE L2 -161 3111 3041 227 221 184 142 chrX 132443893 132444160 -44529980 + L2 LINE L2 2995 3272 0 432 252 87 9 chrX 132444404 132444519 -44529621 - MER5A DNA MER1_type 0 189 66 2033 177 2 35 chrX 132444519 132444948 -44529192 - L1MA4 LINE L1 -6 6294 5880 572 294 17 28 chrX 132445078 132445258 -44528882 + MER5B DNA MER1_type 1 178 0 571 236 111 62 chrX 132445588 132445813 -44528327 + MIR SINE MIR 19 254 -8 678 295 48 65 chrX 132446005 132446419 -44527721 - L3 LINE CR1 -8 1569 1163 349 322 125 40 chrX 132446425 132446729 -44527411 - LTR16A LTR ERVL 0 450 121 1725 331 54 29 chrX 132447186 132447439 -44526701 - HERV16 LTR ERVL -534 4951 4706 1513 163 79 97 chrX 132447439 132447832 -44526308 - MLT1B LTR MaLR -4 386 1 1725 331 54 29 chrX 132447832 132448439 -44525701 - HERV16 LTR ERVL -779 4706 4110 2777 86 6 0 chrX 132448439 132448800 -44525340 - THE1B LTR MaLR -1 363 1 1725 331 54 29 chrX 132448800 132449257 -44524883 - HERV16 LTR ERVL -1375 4110 3666 1682 329 42 21 chrX 132449339 132450275 -44523865 - HERV16 LTR ERVL -1926 3070 2600 423 0 0 0 chrX 132450275 132450322 -44523818 + (CA)n Simple_repeat Simple_repeat 2 48 0 1682 329 42 21 chrX 132450322 132450460 -44523680 - HERV16 LTR ERVL -2396 2600 2466 18410 172 45 3 chrX 132450462 132452174 -44521966 + L1MA2 LINE L1 19 1658 -5907 204 40 0 0 chrX 132452174 132452199 -44521941 + (GA)n Simple_repeat Simple_repeat 2 26 0 18410 172 45 3 chrX 132452199 132456824 -44517316 + L1MA2 LINE L1 1658 6619 -946 5355 87 9 1 chrX 132456824 132457575 -44516565 + L1MA2 LINE L1 6960 7723 0 2470 310 36 15 chrX 132457635 132459376 -44514764 - HERV16 LTR ERVL -2514 2482 613 532 306 19 0 chrX 132459461 132459618 -44514522 - HERV16 LTR ERVL -4834 162 3 572 247 82 121 chrX 132459640 132460020 -44514120 - LTR16A LTR ERVL -21 429 65 235 327 52 52 chrX 132460045 132460256 -44513884 - L3 LINE CR1 -414 1163 953 437 204 92 28 chrX 132460449 132460591 -44513549 + MIR SINE MIR 97 247 -15 304 195 91 13 chrX 132460560 132460637 -44513503 + L2 LINE L2 3231 3313 0 * 407 257 134 31 chrX 132460697 132460893 -44513247 - MIR SINE MIR -48 214 4 213 132 0 0 chrX 132462047 132462085 -44512055 + (CAT)n Simple_repeat Simple_repeat 1 38 0 495 292 42 87 chrX 132462252 132462540 -44511600 + L2 LINE L2 2472 2746 -568 822 118 42 0 chrX 132462545 132462664 -44511476 - AluSg/x SINE Alu -7 303 180 42903 60 14 4 chrX 132462665 132467134 -44507006 - HERVL-A1 LTR ERVL 0 5654 1117 3128 43 0 0 chrX 132467134 132467510 -44506630 - L1PA5 LINE L1 0 6154 5779 42903 60 14 4 chrX 132467510 132468639 -44505501 - HERVL-A1 LTR ERVL -4537 1117 1 3082 84 70 0 chrX 132468639 132468678 -44505462 - MLT2A1 LTR ERVL 0 444 409 198 103 0 0 chrX 132468678 132468707 -44505433 + (TA)n Simple_repeat Simple_repeat 1 29 0 3082 84 70 0 chrX 132468707 132469082 -44505058 - MLT2A1 LTR ERVL -35 409 1 352 264 33 0 chrX 132469082 132469173 -44504967 + L2 LINE L2 3161 3254 -18 284 94 19 0 chrX 132469330 132469383 -44504757 + (CAA)n Simple_repeat Simple_repeat 3 56 0 726 280 61 58 chrX 132469900 132470161 -44503979 + MIR SINE MIR 1 262 0 288 230 90 28 chrX 132470170 132470348 -44503792 - MER112 DNA MER1_type -6 254 66 186 224 0 0 chrX 132470350 132470399 -44503741 + (CATA)n Simple_repeat Simple_repeat 2 50 0 500 292 6 22 chrX 132470466 132470644 -44503496 + (CATA)n Simple_repeat Simple_repeat 2 176 0 468 181 6 55 chrX 132470667 132470849 -44503291 + (CATA)n Simple_repeat Simple_repeat 2 174 0 527 246 6 0 chrX 132470923 132471102 -44503038 + (CA)n Simple_repeat Simple_repeat 1 180 0 388 260 49 59 chrX 132471735 132471939 -44502201 + MLT1J1 LTR MaLR 245 446 0 1251 231 8 4 chrX 132472149 132472404 -44501736 - MIR SINE MIR -5 257 2 432 241 80 18 chrX 132473239 132473351 -44500789 - MIR3 SINE MIR -1 207 89 720 274 32 5 chrX 132473572 132473762 -44500378 - MIR SINE MIR -62 200 6 22 99 0 0 chrX 132475319 132475390 -44498750 + AT_rich Low_complexity Low_complexity 1 71 0 332 154 0 0 chrX 132475637 132475702 -44498438 - L1MA9 LINE L1 -39 6273 6209 531 318 117 47 chrX 132476960 132477234 -44496906 - L3 LINE CR1 -6 1571 1279 397 318 99 59 chrX 132477673 132478003 -44496137 - L2 LINE L2 0 3272 2930 548 336 44 4 chrX 132478403 132478629 -44495511 - MIR SINE MIR -8 254 20 307 264 11 22 chrX 132479632 132479723 -44494417 + MLT1I LTR MaLR 68 157 -252 1114 187 20 8 chrX 132479764 132480070 -44494070 - MLT1A1 LTR MaLR -2 363 10 335 256 178 0 chrX 132480124 132480214 -44493926 + MLT1J2 LTR MaLR 274 379 -71 645 251 44 61 chrX 132480299 132480482 -44493658 - L1M4 LINE L1 -981 5165 4987 2054 124 31 0 chrX 132480482 132480772 -44493368 - AluSq SINE Alu -14 299 1 645 251 44 61 chrX 132480772 132480883 -44493257 - L1M4 LINE L1 -1159 4987 4876 270 0 0 0 chrX 132481294 132481324 -44492816 + (TA)n Simple_repeat Simple_repeat 2 31 0 1976 123 39 3 chrX 132481324 132481608 -44492532 - AluSx SINE Alu -18 294 1 928 85 59 0 chrX 132481833 132481951 -44492189 - AluSg SINE Alu -185 125 1 470 274 255 24 chrX 132482073 132482457 -44491683 - L2 LINE L2 0 3313 2793 6490 96 124 69 chrX 132482457 132483669 -44490471 + MER52C LTR ERV1 1 1278 0 470 274 255 24 chrX 132483669 132483734 -44490406 - L2 LINE L2 -520 2793 2744 242 267 78 61 chrX 132483816 132483996 -44490144 + L1M4b LINE L1 30 212 -6647 257 315 45 35 chrX 132484181 132484381 -44489759 + L1M4b LINE L1 798 999 -5856 2749 214 23 73 chrX 132484397 132484432 -44489708 + L1MA9 LINE L1 5459 5494 -818 1797 57 0 4 chrX 132484432 132484662 -44489478 + L1PA8 LINE L1 5944 6172 0 2749 214 23 73 chrX 132484662 132485499 -44488641 + L1MA9 LINE L1 5494 6287 -25 717 259 53 9 chrX 132485835 132486156 -44487984 + L1M4b LINE L1 2717 3051 -3906 266 241 0 54 chrX 132486164 132486276 -44487864 - L1M4 LINE L1 -3058 3088 2983 3727 235 60 50 chrX 132486289 132487919 -44486221 + L1M4b LINE L1 3058 4702 -2255 1418 173 4 16 chrX 132488023 132488277 -44485863 - AluJo SINE Alu -61 251 1 300 259 23 23 chrX 132488709 132488840 -44485300 - L1ME2 LINE L1 -7 6157 6027 * 6601 120 2 19 chrX 132488836 132489881 -44484259 + THE1C-int LTR MaLR 554 1580 0 1793 128 91 26 chrX 132489881 132490233 -44483907 + THE1C LTR MaLR 1 375 0 2841 232 45 32 chrX 132490539 132491507 -44482633 - L1MD2 LINE L1 -10 6349 5205 1959 235 36 30 chrX 132491514 132492501 -44481639 + L1MB7 LINE L1 14 1145 -5397 2277 216 35 32 chrX 132492504 132493335 -44480805 - MER73 LTR ERVL 0 644 3 2187 257 40 35 chrX 132493338 132493711 -44480429 + L1MB7 LINE L1 1153 1523 -5302 1263 260 35 49 chrX 132493711 132494223 -44479917 - MLT1D LTR MaLR 0 505 1 2187 257 40 35 chrX 132494223 132495244 -44478896 + L1MB7 LINE L1 1523 2696 -4129 297 179 13 13 chrX 132495246 132495324 -44478816 + L1M4 LINE L1 5092 5169 -977 * 595 161 84 0 chrX 132495332 132495475 -44478665 + L1MB4 LINE L1 6025 6179 -1 1007 231 26 11 chrX 132495475 132495815 -44478325 + L1MB7 LINE L1 2649 2996 -3648 * 2711 238 33 4 chrX 132495795 132496655 -44477485 + L1MB7 LINE L1 4179 5063 -1581 200 224 15 0 chrX 132496691 132496758 -44477382 + GA-rich Low_complexity Low_complexity 1 68 0 1560 195 7 3 chrX 132496782 132497084 -44477056 + AluJo SINE Alu 1 303 -9 1488 217 57 3 chrX 132497090 132497408 -44476732 - MLT2C1 LTR ERVL -62 335 1 558 203 250 0 chrX 132497409 132497601 -44476539 + L1MB7 LINE L1 5060 5299 -1345 5887 162 10 5 chrX 132497604 132498786 -44475354 + L1PA13 LINE L1 4261 5443 -718 415 91 0 0 chrX 132498788 132498843 -44475297 - MER51A LTR ERV1 0 634 580 688 25 0 0 chrX 132498851 132498932 -44475208 - MER51B LTR ERV1 -296 81 1 4585 120 11 15 chrX 132498932 132499655 -44474485 + L1PA13 LINE L1 5442 6161 -2 3913 206 48 20 chrX 132499658 132500716 -44473424 + L1MB7 LINE L1 5291 6400 -282 2015 104 3 17 chrX 132500716 132501042 -44473098 - AluSp SINE Alu 0 322 1 3913 206 48 20 chrX 132501042 132501278 -44472862 + L1MB7 LINE L1 6400 6628 -54 283 243 0 68 chrX 132501549 132501652 -44472488 + MIR SINE MIR 111 206 -56 23 54 0 0 chrX 132501652 132501689 -44472451 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chrX 132501905 132501937 -44472203 + AT_rich Low_complexity Low_complexity 1 32 0 5004 63 0 0 chrX 132502302 132502933 -44471207 + L1PA7 LINE L1 5516 6146 -8 213 311 95 0 chrX 132502984 132503058 -44471082 - MIR3 SINE MIR -51 157 77 1596 124 88 33 chrX 132503899 132504173 -44469967 - AluSx SINE Alu -23 289 1 592 275 79 57 chrX 132504290 132504704 -44469436 - MLT1J LTR MaLR -18 597 177 1337 147 30 26 chrX 132505693 132505925 -44468215 + AluSg/x SINE Alu 71 303 -7 901 311 43 22 chrX 132506149 132506519 -44467621 + MLT1K LTR MaLR 141 518 -70 22 35 0 0 chrX 132506789 132506818 -44467322 + AT_rich Low_complexity Low_complexity 1 29 0 373 327 42 9 chrX 132507542 132507756 -44466384 + L1M4 LINE L1 3617 3837 -2309 356 248 65 20 chrX 132507842 132507859 -44466281 - L1MA10 LINE L1 0 6334 6318 1877 221 112 52 chrX 132507859 132508556 -44465584 - L1ME1 LINE L1 -6 6160 5416 1999 140 7 0 chrX 132508556 132508849 -44465291 - AluSx SINE Alu -17 295 1 1877 221 112 52 chrX 132508849 132508881 -44465259 - L1ME1 LINE L1 -750 5416 5387 218 71 0 48 chrX 132508881 132508923 -44465217 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 5412 95 28 14 chrX 132508923 132509733 -44464407 - L1PA10 LINE L1 -21 6147 5326 1905 230 86 15 chrX 132509720 132510315 -44463825 - L1ME1 LINE L1 -755 5391 4755 * 513 236 27 14 chrX 132510415 132510563 -44463577 - L1ME1 LINE L1 -1386 4760 4611 644 339 20 20 chrX 132510805 132511059 -44463081 + MIR SINE MIR 2 255 -7 2265 311 57 33 chrX 132511130 132512415 -44461725 + L2 LINE L2 1983 3312 -1 21 36 0 0 chrX 132512590 132512618 -44461522 + AT_rich Low_complexity Low_complexity 1 28 0 547 310 70 31 chrX 132512836 132513252 -44460888 + L1ME LINE L1 5360 5791 -330 35 24 0 0 chrX 132513390 132513432 -44460708 + AT_rich Low_complexity Low_complexity 1 42 0 578 332 153 7 chrX 132513488 132513795 -44460345 - L2 LINE L2 0 3313 2962 4492 234 32 38 chrX 132513815 132515026 -44459114 + L1ME3A LINE L1 1 1204 -5338 1394 102 5 0 chrX 132515030 132515227 -44458913 + AluSp SINE Alu 116 313 0 1792 143 48 7 chrX 132515246 132515540 -44458600 + AluSg SINE Alu 1 306 -4 284 218 46 0 chrX 132515549 132515636 -44458504 + L1ME3A LINE L1 1256 1346 -5200 * 862 235 42 8 chrX 132515630 132515868 -44458272 + L1ME3A LINE L1 3112 3357 -3287 304 320 47 23 chrX 132517442 132517570 -44456570 - MIR3 SINE MIR -1 207 77 3859 18 0 2 chrX 132518319 132518770 -44455370 + L1PA2 LINE L1 5706 6155 0 1591 199 24 58 chrX 132519373 132519755 -44454385 + MLT1D LTR MaLR 1 369 -136 450 288 63 48 chrX 132519762 132520113 -44454027 + L1ME3A LINE L1 5444 5799 -845 577 298 25 13 chrX 132520234 132520392 -44453748 - LTR33 LTR ERVL -343 178 19 538 250 220 20 chrX 132520407 132520807 -44453333 + L1ME3A LINE L1 5975 6454 -214 235 393 37 9 chrX 132521603 132521710 -44452430 - MIR SINE MIR -69 139 30 901 114 0 0 chrX 132522128 132522260 -44451880 + AluSg/x SINE Alu 170 301 -9 1657 100 0 4 chrX 132523700 132523930 -44450210 - AluY SINE Alu -1 310 82 1366 218 17 31 chrX 132523989 132524342 -44449798 - L1ME2 LINE L1 -40 6124 5777 1805 242 77 48 chrX 132524352 132524629 -44449511 - L1ME2 LINE L1 -1130 5016 4749 967 158 6 0 chrX 132524629 132524794 -44449346 + L1PB3 LINE L1 5987 6152 -2 1805 242 77 48 chrX 132524794 132525337 -44448803 - L1ME2 LINE L1 -1397 4749 4172 4430 183 24 19 chrX 132525341 132525768 -44448372 - L1MA4A LINE L1 -24 6981 6557 2945 90 19 57 chrX 132525768 132526246 -44447894 - L1PA10 LINE L1 0 6168 5709 4430 183 24 19 chrX 132526246 132527537 -44446603 - L1MA4A LINE L1 -448 6557 5194 1957 209 0 12 chrX 132527519 132527936 -44446204 - L1MA4A LINE L1 -3329 3519 3108 * 2915 287 25 77 chrX 132527938 132529162 -44444978 - L1MA4A LINE L1 -5498 1351 195 1994 120 175 6 chrX 132529162 132529528 -44444612 - MSTA LTR MaLR 0 428 1 2915 287 25 77 chrX 132529528 132529583 -44444557 - L1MA4A LINE L1 -6654 195 139 1366 264 109 38 chrX 132529578 132530038 -44444102 - L1M4 LINE L1 -1955 4191 3666 * 1560 172 30 24 chrX 132530038 132530335 -44443805 - AluJb SINE Alu -13 299 1 1366 264 109 38 chrX 132530335 132530552 -44443588 - L1M4 LINE L1 -2480 3666 3466 8438 88 6 8 chrX 132531174 132531186 -44442954 + L1M4 LINE L1 4334 4345 -1829 4227 29 6 2 chrX 132531186 132531701 -44442439 - L1PA4 LINE L1 -4 6151 5635 8438 88 6 8 chrX 132531701 132533086 -44441054 + L1M4 LINE L1 4345 5724 -450 1319 244 83 14 chrX 132533056 132533564 -44440576 - L1M4 LINE L1 -2771 3375 2833 * 530 319 52 8 chrX 132534526 132534774 -44439366 - L2 LINE L2 -218 3095 2837 824 332 98 29 chrX 132535451 132536005 -44438135 - L2 LINE L2 -693 2621 2030 248 258 48 0 chrX 132537264 132537326 -44436814 + L3b LINE CR1 1281 1345 -238 212 300 25 25 chrX 132537381 132537461 -44436679 + L2 LINE L2 2677 2756 -558 1085 248 6 53 chrX 132537791 132538114 -44436026 + MER46C DNA MER2_type 31 338 0 231 392 89 0 chrX 132538267 132538425 -44435715 + LTR67 LTR ERVL 122 293 -264 299 273 8 50 chrX 132538499 132538620 -44435520 + LTR67 LTR ERVL 428 543 -14 706 339 134 16 chrX 132538744 132539363 -44434777 - L2 LINE L2 -575 2739 2048 182 373 119 32 chrX 132539362 132539488 -44434652 - L2 LINE L2 -46 3226 3090 * 28 0 0 0 chrX 132539875 132539903 -44434237 + AT_rich Low_complexity Low_complexity 1 28 0 295 328 56 14 chrX 132540047 132540207 -44433933 + MIR3 SINE MIR 34 168 -40 355 346 32 32 chrX 132540309 132540638 -44433502 + MLT1J2 LTR MaLR 89 421 -2 1967 160 34 8 chrX 132540648 132541004 -44433136 - MLT1A1 LTR MaLR 0 365 1 189 329 78 75 chrX 132541717 132542128 -44432012 - L2 LINE L2 -655 2659 2248 224 283 19 0 chrX 132542259 132542312 -44431828 - L2 LINE L2 -3 3269 3216 191 307 80 11 chrX 132543840 132543928 -44430212 + L3 LINE CR1 618 711 -866 265 259 65 46 chrX 132544753 132544861 -44429279 + L3 LINE CR1 336 445 -1132 842 70 9 0 chrX 132544869 132544984 -44429156 - L1P LINE L1 -2313 3833 3718 670 158 33 0 chrX 132545084 132545204 -44428936 + MLT1D LTR MaLR 379 502 -3 348 346 114 9 chrX 132545219 132545430 -44428710 + L3 LINE CR1 449 681 -896 590 125 0 0 chrX 132545434 132545522 -44428618 + L1MD2 LINE L1 5845 5932 -427 2230 168 10 17 chrX 132545529 132545940 -44428200 - L1MB5 LINE L1 -8 6664 6257 2226 193 49 29 chrX 132546045 132546827 -44427313 - L1MB5 LINE L1 -419 6253 5458 2068 256 36 12 chrX 132546825 132547625 -44426515 - L1MB5 LINE L1 -2593 4051 3233 * 477 243 7 0 chrX 132547679 132547819 -44426321 - L1MB5 LINE L1 -3271 3373 3233 13698 131 20 28 chrX 132547846 132550253 -44423887 + Tigger1 DNA MER2_type 32 2418 0 420 195 4 30 chrX 132550254 132550378 -44423762 - L1MB5 LINE L1 -3852 2792 2670 4187 171 42 59 chrX 132550393 132550639 -44423501 - L1MA9 LINE L1 -31 6281 6032 2119 121 0 0 chrX 132550639 132550928 -44423212 - AluSx SINE Alu -23 289 1 4187 171 42 59 chrX 132550928 132551882 -44422258 - L1MA9 LINE L1 -280 6032 5137 2010 174 0 0 chrX 132551882 132552187 -44421953 - AluSx SINE Alu -7 305 1 4187 171 42 59 chrX 132552187 132552556 -44421584 - L1MA9 LINE L1 -1175 5137 4763 1661 217 147 38 chrX 132552624 132553055 -44421085 + L1 LINE L1 4360 4889 -1257 6586 71 21 0 chrX 132553055 132554078 -44420062 - L1PA8A LINE L1 0 6131 5104 1661 217 147 38 chrX 132554078 132554305 -44419835 + L1PA8A LINE L1 4889 5090 -1056 369 204 241 0 chrX 132554307 132554444 -44419696 - L1MB5 LINE L1 -3955 2691 2522 1669 155 17 28 chrX 132554448 132554825 -44419315 + MSTA LTR MaLR 1 428 0 3162 244 102 49 chrX 132554847 132556030 -44418110 - L1MB5 LINE L1 -4149 2497 1379 7882 13 0 0 chrX 132556030 132557511 -44416629 + L1PA3 LINE L1 4671 6151 -4 3162 244 102 49 chrX 132557511 132558685 -44415455 - L1MB5 LINE L1 -5267 1379 9 231 260 27 0 chrX 132558783 132558856 -44415284 + L1MD2 LINE L1 6047 6121 -238 486 271 246 52 chrX 132558876 132558956 -44415184 + L3 LINE CR1 1094 1157 -420 2534 197 68 11 chrX 132558956 132559489 -44414651 - MLT1F1 LTR MaLR -4 563 1 486 271 246 52 chrX 132559489 132559810 -44414330 + L3 LINE CR1 1157 1573 -4 22 0 0 0 chrX 132560261 132560283 -44413857 + AT_rich Low_complexity Low_complexity 1 22 0 751 350 130 14 chrX 132560403 132560972 -44413168 + L2 LINE L2 2196 2830 -484 440 183 0 0 chrX 132561058 132561151 -44412989 + MER53 DNA DNA 3 95 -94 434 300 93 0 chrX 132561282 132561432 -44412708 + L2 LINE L2 3148 3311 -2 29 60 0 0 chrX 132561588 132561638 -44412502 + AT_rich Low_complexity Low_complexity 1 50 0 1762 216 59 7 chrX 132562305 132562744 -44411396 - MLT1C LTR MaLR -3 464 3 1517 210 17 37 chrX 132562747 132563198 -44410942 - MLT1C-int LTR MaLR -1 1734 957 552 255 20 26 chrX 132563285 132563438 -44410702 - MLT1C-int LTR MaLR -453 918 767 870 173 153 20 chrX 132563438 132563686 -44410454 - MLT1C LTR MaLR -186 281 1 260 329 54 13 chrX 132564752 132564901 -44409239 + L2 LINE L2 2653 2807 -507 727 259 57 6 chrX 132564933 132565285 -44408855 + L1M4 LINE L1 2849 3218 -2928 2598 52 0 0 chrX 132565292 132565597 -44408543 + AluY SINE Alu 1 305 -6 309 109 0 0 chrX 132565597 132565643 -44408497 + (TA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chrX 132565649 132565674 -44408466 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 132566055 132566079 -44408061 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chrX 132567138 132567180 -44406960 + AT_rich Low_complexity Low_complexity 1 42 0 469 250 21 21 chrX 132567416 132567560 -44406580 + L1MEc LINE L1 36 179 -6217 1917 224 25 106 chrX 132567562 132568119 -44406021 + L1MA4A LINE L1 5787 6298 -5 3446 259 28 33 chrX 132568144 132569715 -44404425 + L1MEc LINE L1 175 1878 -4518 372 43 0 0 chrX 132571197 132571243 -44402897 + (CATA)n Simple_repeat Simple_repeat 3 48 0 570 342 34 53 chrX 132572889 132573415 -44400725 + L1MC4a LINE L1 5389 5904 -1904 36 70 0 0 chrX 132575183 132575254 -44398886 + AT_rich Low_complexity Low_complexity 1 71 0 336 272 87 53 chrX 132575264 132575470 -44398670 - MLT1J2 LTR MaLR -2 448 236 183 115 0 0 chrX 132575506 132575532 -44398608 + L2 LINE L2 3268 3293 -20 413 331 75 0 chrX 132576837 132577071 -44397069 + MIR SINE MIR 7 259 -3 314 212 15 0 chrX 132577965 132578031 -44396109 + L2 LINE L2 3204 3270 -2 181 290 0 72 chrX 132580577 132580646 -44393494 - L2 LINE L2 -85 3187 3124 5879 51 0 0 chrX 132582431 132583155 -44390985 + L1PA6 LINE L1 5431 6154 0 1665 95 174 0 chrX 132583191 132583444 -44390696 + AluSx SINE Alu 5 301 -11 4832 150 26 6 chrX 132584303 132585269 -44388871 - L1MC1 LINE L1 -182 6151 5171 23 0 0 0 chrX 132585462 132585485 -44388655 + AT_rich Low_complexity Low_complexity 1 23 0 712 276 0 13 chrX 132585676 132585905 -44388235 - MLT1A1 LTR MaLR 0 365 164 2935 145 20 20 chrX 132585982 132586846 -44387294 + MER49 LTR ERV1 1 923 0 701 188 27 13 chrX 132586846 132586979 -44387161 - MLT1A1 LTR MaLR -230 135 1 431 225 112 64 chrX 132587143 132587392 -44386748 + MLT1D LTR MaLR 20 280 -225 469 203 41 0 chrX 132587436 132587559 -44386581 + MLT1-int LTR MaLR 475 602 -769 870 67 0 0 chrX 132587689 132587823 -44386317 + AluSc SINE Alu 177 310 0 2594 228 67 6 chrX 132587836 132588626 -44385514 + L1MD3 LINE L1 5283 6120 -1875 441 333 14 0 chrX 132588701 132588842 -44385298 - L2 LINE L2 -610 2704 2562 1080 204 44 15 chrX 132588845 132589115 -44385025 + L1MC3 LINE L1 7461 7738 -47 907 221 83 1 chrX 132589115 132589390 -44384750 + L1MB2 LINE L1 5907 6171 0 368 330 37 34 chrX 132589532 132589826 -44384314 + L1 LINE L1 4304 4598 -1548 7444 147 73 12 chrX 132590041 132592225 -44381915 - L1PBa LINE L1 -4083 2780 319 2802 116 0 0 chrX 132592336 132592751 -44381389 - L1P LINE L1 -5731 415 1 1031 234 11 85 chrX 132592811 132593269 -44380871 - L1MCa LINE L1 -3193 3233 2810 802 234 111 18 chrX 132593270 132593815 -44380325 - L1MCa LINE L1 -3941 2666 2054 986 177 46 9 chrX 132593817 132594170 -44379970 - L1MCa LINE L1 -4453 1973 1518 1319 208 71 51 chrX 132594170 132594623 -44379517 - MLT1C LTR MaLR 0 467 6 833 239 67 16 chrX 132594663 132595039 -44379101 - L1M4 LINE L1 -1641 4505 4111 193 346 0 37 chrX 132595467 132595574 -44378566 + MIR SINE MIR 120 222 -40 452 273 86 29 chrX 132596352 132596561 -44377579 + L2 LINE L2 2252 2472 -842 2063 149 29 17 chrX 132596674 132597193 -44376947 + L1MA7 LINE L1 5660 6291 0 367 368 58 25 chrX 132597967 132598366 -44375774 - L2 LINE L2 -447 2867 2456 12993 180 19 12 chrX 132598499 132599953 -44374187 - L1PB1 LINE L1 -280 5871 4428 207 0 0 0 chrX 132599953 132599976 -44374164 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 12993 180 19 12 chrX 132599976 132601195 -44372945 - L1PB1 LINE L1 -1723 4428 3170 243 0 0 0 chrX 132601195 132601222 -44372918 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 12993 180 19 12 chrX 132601222 132601957 -44372183 - L1PB1 LINE L1 -2981 3170 2441 212 292 18 35 chrX 132602062 132602175 -44371965 - L2 LINE L2 -511 2803 2693 552 228 52 42 chrX 132602274 132602467 -44371673 + MIR SINE MIR 30 224 -38 355 310 100 0 chrX 132602520 132602620 -44371520 + L2 LINE L2 3122 3231 -41 1346 308 27 18 chrX 132602620 132603059 -44371081 + LTR16A LTR ERVL 1 443 -7 2432 123 7 62 chrX 132604004 132604270 -44369870 + MER44D DNA MER2_type 335 443 -2044 883 81 8 8 chrX 132604270 132604394 -44369746 + L1MA2 LINE L1 6168 6291 -13 2432 123 7 62 chrX 132604394 132604548 -44369592 + MER44D DNA MER2_type 443 604 -1 374 307 34 126 chrX 132604792 132605173 -44368967 - L2 LINE L2 0 3272 2927 207 347 52 52 chrX 132605643 132605914 -44368226 + L2 LINE L2 2706 2976 -338 934 265 37 8 chrX 132606020 132606265 -44367875 + MIR SINE MIR 10 261 -1 23 33 0 0 chrX 132607094 132607124 -44367016 + AT_rich Low_complexity Low_complexity 1 30 0 568 270 39 77 chrX 132607491 132607724 -44366416 + MLT1H LTR MaLR 117 340 -209 228 250 0 57 chrX 132607776 132607864 -44366276 + MLT1H LTR MaLR 370 452 -97 * 409 259 77 29 chrX 132607841 132608011 -44366129 + MLT1H LTR MaLR 350 527 -22 3075 242 56 18 chrX 132608540 132608804 -44365336 + L1ME1 LINE L1 4327 4579 -1587 2112 118 27 30 chrX 132608804 132609169 -44364971 + THE1B LTR MaLR 1 364 0 3075 242 56 18 chrX 132609169 132610667 -44363473 + L1ME1 LINE L1 4579 6151 -15 408 288 73 75 chrX 132610681 132611161 -44362979 + HAL1 LINE L1 11 489 -2018 3192 247 85 8 chrX 132611352 132612522 -44361618 - L1 LINE L1 -2140 4006 2698 255 195 0 52 chrX 132612497 132612574 -44361566 - L1M4 LINE L1 -930 5216 5144 * 2955 309 35 16 chrX 132612585 132613632 -44360508 + HERV16 LTR ERVL 281 1347 -3649 191 236 0 55 chrX 132613717 132613772 -44360368 - MER5B DNA MER1_type -123 55 4 535 287 82 28 chrX 132613916 132614251 -44359889 - L1ME LINE L1 -390 5731 5373 329 314 86 40 chrX 132614592 132614917 -44359223 - L1ME LINE L1 -1408 4738 4399 4014 173 26 8 chrX 132615433 132616155 -44357985 - MSTA-int LTR MaLR -916 735 1 2026 134 137 11 chrX 132616155 132616535 -44357605 - MSTA LTR MaLR 0 428 1 197 390 72 40 chrX 132616927 132616957 -44357183 - L2 LINE L2 -591 2723 2695 2138 101 7 3 chrX 132616957 132617245 -44356895 - AluSc SINE Alu -20 289 1 197 390 72 40 chrX 132617245 132617491 -44356649 - L2 LINE L2 -619 2695 2438 360 207 44 74 chrX 132617521 132617656 -44356484 + MIR SINE MIR 72 202 -60 197 333 0 0 chrX 132617963 132618026 -44356114 + MIR3 SINE MIR 93 155 -53 2003 125 0 0 chrX 132618392 132618679 -44355461 - THE1B LTR MaLR -77 287 1 5425 144 17 16 chrX 132618684 132619086 -44355054 + L1PA15 LINE L1 5086 5486 -679 2233 111 7 3 chrX 132619086 132619393 -44354747 + AluSc SINE Alu 1 308 -1 5425 144 17 16 chrX 132619393 132620062 -44354078 + L1PA15 LINE L1 5486 6158 -7 22 0 0 0 chrX 132620093 132620115 -44354025 + AT_rich Low_complexity Low_complexity 1 22 0 5394 203 15 5 chrX 132620121 132621325 -44352815 - L1 LINE L1 -2352 5213 3998 1904 145 13 3 chrX 132621425 132621743 -44352397 - L1MA7 LINE L1 -283 6008 5688 781 189 179 19 chrX 132621741 132621953 -44352187 - L1M4b LINE L1 -5577 1282 1037 * 1684 200 133 87 chrX 132622554 132623334 -44350806 - LTR1B LTR ERV1 0 1020 29 395 332 47 31 chrX 132623340 132623533 -44350607 + LTR33 LTR ERVL 2 197 -324 471 332 87 21 chrX 132624406 132624647 -44349493 - MIR SINE MIR -3 259 3 430 324 27 27 chrX 132626161 132626380 -44347760 - L1MC/D LINE L1 -2329 5479 5261 25359 39 2 1 chrX 132626396 132629556 -44344584 + L1P LINE L1 2228 5391 -755 11690 168 26 12 chrX 132629663 132631690 -44342450 - L1 LINE L1 -5499 2066 13 218 300 0 0 chrX 132632986 132633036 -44341104 - MIR SINE MIR -126 82 33 24 0 0 0 chrX 132633433 132633457 -44340683 + AT_rich Low_complexity Low_complexity 1 24 0 324 281 50 0 chrX 132633471 132633592 -44340548 + L1ME4a LINE L1 5992 6118 -3 196 367 128 15 chrX 132634523 132634719 -44339421 - L2 LINE L2 -672 2642 2425 887 311 146 62 chrX 132634812 132634874 -44339266 + L3 LINE CR1 398 453 -1124 2547 142 26 5 chrX 132634874 132635290 -44338850 + MSTB LTR MaLR 1 425 -1 887 311 146 62 chrX 132635290 132635348 -44338792 + L3 LINE CR1 453 505 -1072 351 0 0 0 chrX 132635348 132635387 -44338753 + (TG)n Simple_repeat Simple_repeat 2 40 0 887 311 146 62 chrX 132635387 132635734 -44338406 + L3 LINE CR1 505 821 -756 2293 90 7 3 chrX 132635734 132636044 -44338096 + AluSp SINE Alu 1 311 -2 887 311 146 62 chrX 132636044 132636355 -44337785 + L3 LINE CR1 821 1244 -333 464 332 16 21 chrX 132636636 132636823 -44337317 + LTR67 LTR ERVL 365 550 -7 189 314 216 26 chrX 132636875 132637028 -44337112 + L3 LINE CR1 1389 1570 -7 856 306 18 62 chrX 132637501 132637651 -44336489 + L2 LINE L2 2898 3053 -260 807 220 0 6 chrX 132637651 132637810 -44336330 + FRAM SINE Alu 1 158 -8 856 306 18 62 chrX 132637810 132638093 -44336047 + L2 LINE L2 3053 3312 -1 1112 236 8 37 chrX 132638568 132638938 -44335202 + MLT2D LTR ERVL 1 414 0 254 227 13 0 chrX 132639902 132639977 -44334163 + CT-rich Low_complexity Low_complexity 5 80 0 523 318 104 34 chrX 132640180 132640604 -44333536 + L2 LINE L2 2624 3080 -233 809 152 0 14 chrX 132640605 132640750 -44333390 - L1MA8 LINE L1 -366 5925 5783 1594 175 142 9 chrX 132640774 132641106 -44333034 + MSTA LTR MaLR 53 428 0 387 42 0 0 chrX 132641106 132641154 -44332986 - L1MA8 LINE L1 -416 5752 5705 1447 163 36 39 chrX 132641154 132641480 -44332660 + L1MA9 LINE L1 5967 6302 -10 450 295 114 19 chrX 132641500 132641524 -44332616 + L2 LINE L2 3083 3103 -210 1435 204 62 7 chrX 132641524 132641693 -44332447 - AluJo SINE Alu -7 305 112 272 27 27 0 chrX 132641693 132641730 -44332410 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 1435 204 62 7 chrX 132641730 132641849 -44332291 - AluJo SINE Alu -200 112 1 450 295 114 19 chrX 132641849 132642034 -44332106 + L2 LINE L2 3103 3312 -1 722 299 32 5 chrX 132642071 132642292 -44331848 + MIR SINE MIR 36 262 0 216 184 0 0 chrX 132642292 132642341 -44331799 + (CTA)n Simple_repeat Simple_repeat 1 49 0 412 252 52 17 chrX 132645692 132645807 -44328333 + MIR SINE MIR 118 236 -26 1678 170 14 31 chrX 132645850 132645962 -44328178 + AluJo SINE Alu 1 113 -199 2193 165 53 15 chrX 132645962 132646374 -44327766 - MSTA LTR MaLR 0 428 1 1678 170 14 31 chrX 132646374 132646555 -44327585 + AluJo SINE Alu 113 289 -23 700 207 0 0 chrX 132646574 132646695 -44327445 + FLAM_C SINE Alu 1 121 -22 390 302 47 20 chrX 132646749 132646898 -44327242 + MLT1H1 LTR MaLR 148 300 -249 906 353 38 7 chrX 132646899 132647321 -44326819 - LTR16A LTR ERVL 0 450 16 398 231 91 77 chrX 132647372 132647593 -44326547 + MLT1H1 LTR MaLR 327 550 -5 6832 51 30 0 chrX 132648302 132649778 -44324362 - L1PA7 LINE L1 -5 6149 4648 227 197 136 0 chrX 132649778 132649844 -44324296 + L1PA7 LINE L1 4591 4665 -1481 996 253 4 9 chrX 132650055 132650280 -44323860 + MER58A DNA MER1_type 1 224 0 2076 123 0 0 chrX 132650419 132650704 -44323436 - AluSx SINE Alu -3 309 25 21 57 0 0 chrX 132651284 132651319 -44322821 + AT_rich Low_complexity Low_complexity 1 35 0 327 272 149 26 chrX 132651735 132651849 -44322291 + L2 LINE L2 3145 3272 0 207 267 153 61 chrX 132651939 132652070 -44322070 + L2 LINE L2 3167 3309 -4 269 350 102 7 chrX 132652130 132652267 -44321873 + L2 LINE L2 3115 3264 -8 14002 232 25 11 chrX 132653374 132658613 -44315527 - L1PA16 LINE L1 -105 7499 2182 642 356 54 48 chrX 132659161 132659750 -44314390 - L1PA16 LINE L1 -6194 1380 788 5943 112 4 10 chrX 132659920 132661052 -44313088 + L1PA13 LINE L1 5033 6161 -2 273 57 0 0 chrX 132661261 132661296 -44312844 + (TG)n Simple_repeat Simple_repeat 2 36 0 709 303 32 5 chrX 132661545 132661766 -44312374 - MIR SINE MIR 0 262 36 473 276 119 24 chrX 132661803 132661988 -44312152 - L2 LINE L2 -1 3312 3103 1444 201 62 7 chrX 132661988 132662107 -44312033 + AluJo SINE Alu 1 112 -200 248 0 31 0 chrX 132662107 132662139 -44312001 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 1444 201 62 7 chrX 132662139 132662307 -44311833 + AluJo SINE Alu 112 304 -8 473 276 119 24 chrX 132662307 132662331 -44311809 - L2 LINE L2 -210 3103 3083 1459 168 26 38 chrX 132662351 132662691 -44311449 - L1MA9 LINE L1 -10 6302 5967 303 27 0 0 chrX 132662691 132662728 -44311412 + L1M3 LINE L1 5716 5752 -416 1546 174 156 9 chrX 132662728 132663056 -44311084 - MSTA LTR MaLR 0 428 53 555 56 0 0 chrX 132663056 132663127 -44311013 + (CA)n Simple_repeat Simple_repeat 2 72 0 1539 262 48 24 chrX 132663228 132663690 -44310450 - LTR33 LTR ERVL -2 519 47 377 272 29 100 chrX 132663883 132664122 -44310018 + MIR SINE MIR 3 224 -38 209 370 0 22 chrX 132664498 132664590 -44309550 + L2 LINE L2 2965 3054 -218 29 0 0 0 chrX 132665245 132665274 -44308866 + AT_rich Low_complexity Low_complexity 1 29 0 400 325 54 18 chrX 132666504 132666670 -44307470 + MIR SINE MIR 1 172 -90 2455 132 0 3 chrX 132666804 132667167 -44306973 + THE1B LTR MaLR 1 362 -2 2472 243 91 44 chrX 132667299 132668482 -44305658 - L1M1 LINE L1 -3898 2312 1074 11171 102 13 1 chrX 132668513 132670075 -44304065 - THE1B-int LTR MaLR 0 1580 1 1945 133 21 56 chrX 132670075 132670452 -44303688 - THE1B LTR MaLR 0 364 1 1228 296 17 0 chrX 132670453 132670862 -44303278 - L1M1 LINE L1 -4956 1185 722 2176 112 7 10 chrX 132670942 132671238 -44302902 - AluSq SINE Alu -17 296 2 5137 149 31 70 chrX 132671281 132672557 -44301583 + L1MA10 LINE L1 5085 6331 -3 395 230 35 0 chrX 132672558 132672645 -44301495 - MIR3 SINE MIR -3 205 116 1489 259 53 31 chrX 132673516 132673967 -44300173 - MER76 LTR ERV 0 688 228 1602 102 4 8 chrX 132673968 132674212 -44299928 - L1MA3 LINE L1 -221 6084 5842 1014 229 41 0 chrX 132674212 132674430 -44299710 - MER76 LTR ERV -459 229 3 411 316 89 11 chrX 132675011 132675201 -44298939 - MIR SINE MIR -10 252 48 2705 200 103 44 chrX 132675356 132675661 -44298479 + L1MB7 LINE L1 4471 4756 -1390 2228 118 0 9 chrX 132675661 132676010 -44298130 - L1PA13 LINE L1 -3 6160 5815 2705 200 103 44 chrX 132676010 132676479 -44297661 + L1MB7 LINE L1 4756 5291 -855 2486 195 34 9 chrX 132676480 132677033 -44297107 + L1MB7 LINE L1 5609 6175 -9 1026 39 0 0 chrX 132677583 132677713 -44296427 + L1PA4 LINE L1 6026 6155 0 26 0 0 0 chrX 132677801 132677827 -44296313 + AT_rich Low_complexity Low_complexity 1 26 0 328 331 31 38 chrX 132677957 132678117 -44296023 - MIR SINE MIR -101 161 3 373 304 30 30 chrX 132679123 132679258 -44294882 - L2 LINE L2 0 3313 3179 * 389 340 130 5 chrX 132679254 132679454 -44294686 - MIR SINE MIR -4 258 34 294 319 139 0 chrX 132681025 132681126 -44293014 + L2 LINE L2 3150 3278 -35 222 37 0 0 chrX 132681126 132681153 -44292987 + (TG)n Simple_repeat Simple_repeat 2 28 0 294 319 139 0 chrX 132681153 132681195 -44292945 + L2 LINE L2 3278 3313 0 340 375 18 6 chrX 132681502 132681781 -44292359 + L1ME2 LINE L1 43 384 -6012 1494 281 29 62 chrX 132682200 132683534 -44290606 + L1ME2 LINE L1 661 2004 -4392 255 284 0 0 chrX 132683600 132683674 -44290466 + L1ME2 LINE L1 1997 2070 -4326 1734 231 83 8 chrX 132683675 132684302 -44289838 + L1ME2 LINE L1 5188 5844 -391 921 143 0 0 chrX 132684313 132684446 -44289694 - FLAM_C SINE Alu -10 133 1 928 210 102 22 chrX 132684448 132684769 -44289371 + L1ME2 LINE L1 5850 6223 -10 1567 329 79 59 chrX 132685606 132686324 -44287816 + MER45C DNA AcHobo 2 737 -844 2662 122 21 19 chrX 132686324 132686751 -44287389 + MSTA LTR MaLR 1 428 0 1567 329 79 59 chrX 132686751 132686795 -44287345 + MER45C DNA AcHobo 737 779 -174 678 134 55 8 chrX 132686905 132687032 -44287108 + MER45B DNA AcHobo 716 848 -192 515 307 43 16 chrX 132688307 132688561 -44285579 + L1ME LINE L1 5402 5662 -459 14356 138 21 14 chrX 132688578 132690978 -44283162 - Tigger1 DNA MER2_type 0 2418 1 638 294 86 69 chrX 132691037 132691500 -44282640 + MLT1H LTR MaLR 77 547 -2 1101 198 62 29 chrX 132691905 132692148 -44281992 + MER45C DNA AcHobo 1 251 -702 259 270 70 20 chrX 132693007 132693107 -44281033 + MIR SINE MIR 46 150 -112 523 323 40 46 chrX 132693110 132693413 -44280727 + L2 LINE L2 3013 3313 0 336 250 0 12 chrX 132695342 132695422 -44278718 + L2 LINE L2 2690 2768 -546 397 244 30 60 chrX 132695487 132695655 -44278485 + L2 LINE L2 3074 3236 -77 27 0 0 0 chrX 132695923 132695950 -44278190 + AT_rich Low_complexity Low_complexity 1 27 0 1407 268 57 42 chrX 132695968 132696272 -44277868 - L1ME3A LINE L1 -220 5950 5652 472 225 127 55 chrX 132696272 132696508 -44277632 - MER112 DNA MER1_type -3 253 1 1407 268 57 42 chrX 132696508 132696967 -44277173 - L1ME3A LINE L1 -518 5652 5201 2430 82 3 0 chrX 132696967 132697272 -44276868 + AluSp SINE Alu 1 306 -7 1407 268 57 42 chrX 132697272 132697329 -44276811 - L1ME3A LINE L1 -969 5201 5146 1560 133 0 0 chrX 132697329 132697554 -44276586 - AluSg/x SINE Alu -4 308 84 1407 268 57 42 chrX 132697554 132697749 -44276391 - L1ME3A LINE L1 -1024 5146 4918 527 56 0 0 chrX 132697762 132697833 -44276307 - L1PA5 LINE L1 -3 6151 6081 826 292 39 32 chrX 132697947 132698143 -44275997 - L1ME3A LINE L1 -1301 4845 4652 360 0 0 0 chrX 132698143 132698183 -44275957 + (TG)n Simple_repeat Simple_repeat 2 41 0 826 292 39 32 chrX 132698183 132698418 -44275722 - L1ME3A LINE L1 -1494 4652 4411 466 323 22 8 chrX 132698525 132698820 -44275320 + L1MC/D LINE L1 5266 5574 -596 4097 36 2 0 chrX 132699073 132699593 -44274547 - L1P1 LINE L1 -1074 5072 4552 2743 23 3 0 chrX 132699585 132700118 -44274022 + L1P1 LINE L1 5065 5598 -557 * 13617 123 19 16 chrX 132700218 132702476 -44271664 - L1P LINE L1 -3873 2273 11 348 64 0 0 chrX 132702672 132702719 -44271421 + (TG)n Simple_repeat Simple_repeat 2 48 0 428 262 105 64 chrX 132703571 132703743 -44270397 - MER5A DNA MER1_type -3 186 8 509 302 50 11 chrX 132703754 132703936 -44270204 - MIR3 SINE MIR -15 193 5 228 268 27 54 chrX 132704091 132704203 -44269937 - MER20B DNA MER1_type -638 145 37 2210 128 31 19 chrX 132705084 132705443 -44268697 - THE1B LTR MaLR -1 363 1 714 280 23 6 chrX 132705769 132705944 -44268196 - MIR3 SINE MIR -14 194 17 224 347 131 0 chrX 132706747 132706946 -44267194 + L2 LINE L2 2386 2610 -704 243 307 27 0 chrX 132706961 132707036 -44267104 - L2 LINE L2 -38 3275 3199 412 340 32 26 chrX 132707040 132707196 -44266944 + L2 LINE L2 3112 3268 -4 384 264 91 18 chrX 132707812 132707922 -44266218 + L2 LINE L2 3155 3272 0 450 298 60 6 chrX 132707996 132708164 -44265976 - MIR3 SINE MIR -30 178 2 1148 244 83 14 chrX 132708799 132709307 -44264833 + L1M4 LINE L1 2833 3375 -2771 8176 35 5 1 chrX 132709377 132710675 -44263465 - L1PA4 LINE L1 -520 5635 4334 4162 40 6 2 chrX 132710675 132711181 -44262959 + L1PA4 LINE L1 5635 6155 0 321 100 0 0 chrX 132711937 132711987 -44262153 + (TCCC)n Simple_repeat Simple_repeat 2 51 0 580 36 24 12 chrX 132711987 132712070 -44262070 + (TTTC)n Simple_repeat Simple_repeat 2 85 0 526 141 0 0 chrX 132712072 132712150 -44261990 - AluSp/q SINE Alu -34 279 202 239 194 9 59 chrX 132712240 132712351 -44261789 - L1M4b LINE L1 -990 2328 972 398 349 144 40 chrX 132712844 132713239 -44260901 + L2 LINE L2 2836 3271 -1 358 317 37 71 chrX 132714391 132714607 -44259533 - MIR3 SINE MIR -45 217 4 2093 114 10 7 chrX 132714879 132715176 -44258964 - AluSx SINE Alu -14 298 1 222 343 0 15 chrX 132715817 132715884 -44258256 + MIR SINE MIR 21 86 -122 479 134 0 10 chrX 132716112 132716209 -44257931 + (GA)n Simple_repeat Simple_repeat 1 96 0 1252 218 102 35 chrX 132716389 132716761 -44257379 - MLT1I LTR MaLR -9 400 4 30 27 0 0 chrX 132717719 132717756 -44256384 + AT_rich Low_complexity Low_complexity 1 37 0 390 258 16 74 chrX 132718130 132718320 -44255820 + MLT1J LTR MaLR 1 179 -332 1403 323 67 21 chrX 132718321 132718450 -44255690 + HERV16 LTR ERVL 1998 2120 -2876 7594 85 3 2 chrX 132718450 132719418 -44254722 - LTR5 LTR ERVK 0 969 1 1403 323 67 21 chrX 132719418 132720215 -44253925 + HERV16 LTR ERVL 2120 2970 -2026 1137 217 12 4 chrX 132720215 132720468 -44253672 - LTR26 LTR ERV1 0 603 349 1229 326 66 34 chrX 132720473 132721437 -44252703 + HERV16 LTR ERVL 3445 4439 -1215 501 344 19 30 chrX 132721532 132722092 -44252048 + HERV16 LTR ERVL 4533 4696 -300 876 217 22 6 chrX 132722285 132722465 -44251675 + MER5A DNA MER1_type 1 183 -6 205 387 0 0 chrX 132722511 132722586 -44251554 - L2 LINE L2 -646 2668 2594 852 175 26 31 chrX 132723142 132723370 -44250770 + L1MD3 LINE L1 6899 7125 -870 496 185 102 0 chrX 132723384 132723492 -44250648 + L1PB1 LINE L1 6 124 -6739 407 211 11 0 chrX 132723562 132723657 -44250483 + L1PB1 LINE L1 104 199 -6664 * 14229 186 17 15 chrX 132723646 132725705 -44248435 + L1PB1 LINE L1 621 2675 -4192 2401 59 23 10 chrX 132725705 132726010 -44248130 + AluY SINE Alu 1 309 -2 14229 186 17 15 chrX 132726010 132728231 -44245909 + L1PB1 LINE L1 2675 5123 -1744 261 0 0 0 chrX 132728231 132728260 -44245880 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 14229 186 17 15 chrX 132728260 132730007 -44244133 + L1PB1 LINE L1 5123 6866 -1 302 246 254 17 chrX 132730009 132730127 -44244013 + L1MD3 LINE L1 7094 7239 -756 632 174 0 0 chrX 132730141 132730250 -44243890 + MLT1F1 LTR MaLR 16 124 -443 1444 146 197 0 chrX 132730286 132730601 -44243539 + L1MD3 LINE L1 7619 7995 0 1107 300 62 4 chrX 132732104 132732492 -44241648 - L2 LINE L2 -251 3062 2653 12946 102 17 26 chrX 132732943 132735729 -44238411 - HERVH LTR ERV1 -5083 2630 1 2782 70 123 0 chrX 132735731 132736130 -44238010 - LTR7 LTR ERV1 -2 448 1 318 250 129 26 chrX 132736130 132736246 -44237894 - L2 LINE L2 -469 2845 2718 236 264 154 33 chrX 132736251 132736342 -44237798 - MER5B DNA MER1_type -76 102 1 459 276 8 24 chrX 132736343 132736470 -44237670 - L2 LINE L2 -611 2703 2579 723 280 69 4 chrX 132736846 132737078 -44237062 - MIR SINE MIR -1 261 15 189 272 61 70 chrX 132738848 132738962 -44235178 + MIR SINE MIR 150 262 0 3503 152 46 37 chrX 132739129 132739828 -44234312 - MER39 LTR ERV1 0 707 3 5789 157 27 2 chrX 132739832 132740833 -44233307 + Tigger7 DNA MER2_type 1 1026 -1461 488 195 0 0 chrX 132740831 132740918 -44233222 + Tigger7 DNA MER2_type 2400 2486 -1 * 207 300 0 0 chrX 132740948 132740998 -44233142 + G-rich Low_complexity Low_complexity 5 54 0 202 269 0 0 chrX 132741163 132741215 -44232925 + L2 LINE L2 3261 3312 -1 420 250 61 67 chrX 132741717 132741897 -44232243 - MIR3 SINE MIR -14 194 16 557 311 30 0 chrX 132742184 132742351 -44231789 + MIR SINE MIR 48 219 -43 1138 205 53 19 chrX 132742586 132742849 -44231291 + MLT1E1 LTR MaLR 1 272 -382 195 290 150 50 chrX 132743498 132743598 -44230542 - MIR SINE MIR -138 124 15 271 301 20 123 chrX 132743638 132743841 -44230299 + MIR3 SINE MIR 22 203 -5 189 339 46 37 chrX 132744008 132744117 -44230023 - L2 LINE L2 -5 3308 3199 227 274 60 24 chrX 132744244 132744328 -44229812 + MIR SINE MIR 44 130 -78 421 141 0 13 chrX 132744346 132744424 -44229716 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 1545 217 4 0 chrX 132744426 132744707 -44229433 - AluJo SINE Alu -30 282 1 1548 198 13 35 chrX 132744809 132745182 -44228958 - MLT1A1 LTR MaLR 0 365 1 500 385 68 26 chrX 132745412 132745552 -44228588 - L2 LINE L2 -441 2873 2740 207 69 0 0 chrX 132745552 132745581 -44228559 + (TTGG)n Simple_repeat Simple_repeat 4 32 0 500 385 68 26 chrX 132745581 132746156 -44227984 - L2 LINE L2 -574 2740 2128 386 281 36 22 chrX 132746418 132746557 -44227583 + L2 LINE L2 1875 2015 -1299 22 35 0 0 chrX 132746935 132746964 -44227176 + AT_rich Low_complexity Low_complexity 1 29 0 244 242 30 61 chrX 132747396 132747561 -44226579 + HAL1 LINE L1 1005 1164 -1343 1660 253 30 32 chrX 132747619 132748093 -44226047 - MLT1E2 LTR MaLR -103 523 51 1074 235 79 21 chrX 132748175 132748553 -44225587 + L1ME1 LINE L1 5763 6162 -4 1314 276 76 23 chrX 132748573 132749142 -44224998 + HAL1 LINE L1 1209 1807 -700 1688 165 85 46 chrX 132749277 132749689 -44224451 - MSTA LTR MaLR 0 428 1 1944 116 3 18 chrX 132750667 132750877 -44223263 - AluSc SINE Alu 0 318 112 1689 29 0 5 chrX 132750877 132751082 -44223058 - L1PA4 LINE L1 -1 6154 5951 1944 116 3 18 chrX 132751082 132751193 -44222947 - AluSc SINE Alu -206 112 1 25 31 0 0 chrX 132751202 132751234 -44222906 + AT_rich Low_complexity Low_complexity 1 32 0 2199 140 14 8 chrX 132751234 132751583 -44222557 - L1PB1 LINE L1 -4 6147 5794 189 0 0 0 chrX 132751583 132751604 -44222536 + (TG)n Simple_repeat Simple_repeat 2 22 0 2199 140 14 8 chrX 132751604 132751618 -44222522 - L1PB1 LINE L1 -357 5794 5782 400 155 0 21 chrX 132751618 132751715 -44222425 + (TA)n Simple_repeat Simple_repeat 2 96 0 3546 109 6 14 chrX 132751716 132752409 -44221731 - L1PB1 LINE L1 -361 5790 5105 217 276 11 58 chrX 132752705 132752792 -44221348 - MIR SINE MIR -59 149 67 503 280 86 27 chrX 132753414 132753600 -44220540 - MIR SINE MIR -18 244 48 335 286 16 56 chrX 132754300 132754426 -44219714 + L2 LINE L2 3151 3271 -1 510 190 0 0 chrX 132754546 132754646 -44219494 - L1PB4 LINE L1 -5 6151 6052 29 60 0 0 chrX 132755259 132755309 -44218831 + AT_rich Low_complexity Low_complexity 1 50 0 1313 214 49 44 chrX 132755320 132755727 -44218413 - MLT2D LTR ERVL 0 414 6 409 275 30 15 chrX 132755731 132755862 -44218278 + MIR SINE MIR 94 226 -36 671 275 31 16 chrX 132756242 132756435 -44217705 - MIR SINE MIR -45 217 22 23 33 0 0 chrX 132757494 132757524 -44216616 + AT_rich Low_complexity Low_complexity 1 30 0 22453 60 1 0 chrX 132757538 132761231 -44212909 - L1PA6 LINE L1 0 6154 2466 817 323 66 64 chrX 132761377 132761940 -44212200 + L2 LINE L2 2327 2887 -385 1645 154 50 106 chrX 132761940 132762084 -44212056 + MLT2D LTR ERVL 3 153 -261 242 28 0 28 chrX 132762084 132762120 -44212020 + (TAATG)n Simple_repeat Simple_repeat 3 37 0 1645 154 50 106 chrX 132762120 132762338 -44211802 + MLT2D LTR ERVL 153 340 -74 465 90 0 0 chrX 132762338 132762405 -44211735 + (CA)n Simple_repeat Simple_repeat 2 68 0 1645 154 50 106 chrX 132762405 132762477 -44211663 + MLT2D LTR ERVL 340 414 0 817 323 66 64 chrX 132762477 132762857 -44211283 + L2 LINE L2 2887 3264 -8 226 135 0 0 chrX 132762881 132762918 -44211222 + MLT1F LTR MaLR 506 542 0 305 279 18 85 chrX 132763175 132763340 -44210800 + MIR SINE MIR 35 188 -74 753 316 10 20 chrX 132763739 132763935 -44210205 - MER91A DNA MER1_type -1 195 2 283 371 120 44 chrX 132763935 132764316 -44209824 + L2 LINE L2 2565 2976 -338 337 381 38 31 chrX 132764512 132764672 -44209468 + L2 LINE L2 3112 3272 0 319 383 58 27 chrX 132764674 132764862 -44209278 - MIR3 SINE MIR -7 201 8 370 345 122 18 chrX 132765277 132765693 -44208447 + L1MC/D LINE L1 5089 5541 -748 181 214 18 107 chrX 132766541 132766597 -44207543 - MER5A DNA MER1_type -138 51 1 1494 196 16 60 chrX 132766993 132767375 -44206765 - MLT1A1 LTR MaLR 0 365 1 203 227 45 0 chrX 132767947 132767991 -44206149 + (CATG)n Simple_repeat Simple_repeat 1 46 0 2632 263 62 105 chrX 132768990 132769855 -44204285 + L2 LINE L2 1749 2509 -804 2075 97 94 29 chrX 132769855 132770197 -44203943 + THE1B LTR MaLR 1 364 0 2632 263 62 105 chrX 132770197 132770969 -44203171 + L2 LINE L2 2509 3313 0 382 254 102 0 chrX 132770950 132771068 -44203072 - MIR3 SINE MIR -36 172 43 * 2528 34 0 0 chrX 132771893 132772191 -44201949 + L1PA5 LINE L1 5853 6150 -4 21 36 0 0 chrX 132772191 132772219 -44201921 + AT_rich Low_complexity Low_complexity 1 28 0 472 245 59 169 chrX 132772612 132772756 -44201384 + MIR SINE MIR 5 103 -159 7689 17 8 0 chrX 132772756 132774340 -44199800 + L1PA3 LINE L1 4564 6155 0 472 245 59 169 chrX 132774340 132774485 -44199655 + MIR SINE MIR 103 262 0 690 270 38 5 chrX 132774531 132774716 -44199424 + MIR SINE MIR 65 255 -7 26 64 0 0 chrX 132774902 132774949 -44199191 + AT_rich Low_complexity Low_complexity 1 47 0 518 318 42 5 chrX 132777633 132777825 -44196315 - MIR3 SINE MIR -7 201 3 8364 54 1 1 chrX 132778244 132779213 -44194927 + LTR5 LTR ERVK 1 969 0 985 239 31 4 chrX 132780437 132780692 -44193448 - MIR SINE MIR 0 262 1 231 303 0 0 chrX 132780739 132780805 -44193335 - MIR SINE MIR -56 152 87 189 0 0 0 chrX 132781903 132781924 -44192216 + (CAA)n Simple_repeat Simple_repeat 2 22 0 462 305 17 40 chrX 132782543 132782720 -44191420 - MIR SINE MIR -56 206 34 2330 91 7 0 chrX 132782779 132783077 -44191063 + AluSp SINE Alu 3 302 -11 1599 127 52 0 chrX 132783077 132783327 -44190813 + AluSc SINE Alu 44 308 -1 889 232 6 0 chrX 132783506 132783683 -44190457 - MER45A DNA AcHobo 0 178 1 191 271 0 0 chrX 132783945 132783993 -44190147 + L2 LINE L2 3264 3311 -2 630 277 59 10 chrX 132784397 132784599 -44189541 + MIR SINE MIR 17 228 -34 21 0 0 0 chrX 132784987 132785008 -44189132 + AT_rich Low_complexity Low_complexity 1 21 0 253 168 69 0 chrX 132786655 132786702 -44187438 + MIR SINE MIR 103 152 -56 324 324 36 7 chrX 132786744 132786883 -44187257 - L3 LINE CR1 -60 1517 1375 339 254 41 33 chrX 132787733 132787855 -44186285 - MIR SINE MIR -6 256 134 1791 158 45 0 chrX 132788259 132788551 -44185589 - AluSg SINE Alu -1 309 5 341 311 141 48 chrX 132789454 132789613 -44184527 - MIR SINE MIR -10 252 68 2066 158 42 14 chrX 132789613 132789811 -44184329 + MLT1A1 LTR MaLR 1 215 -150 327 25 0 0 chrX 132789811 132789851 -44184289 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 2066 158 42 14 chrX 132789851 132790007 -44184133 + MLT1A1 LTR MaLR 215 365 0 341 311 141 48 chrX 132790007 132790053 -44184087 - MIR SINE MIR -194 68 28 271 59 98 0 chrX 132791337 132791388 -44182752 + L1P LINE L1 3327 3382 -2764 381 110 28 0 chrX 132791388 132791468 -44182672 - L1P LINE L1 -822 5324 5243 6523 115 40 81 chrX 132791526 132792982 -44181158 + SVA Other Other 28 1426 0 371 295 43 52 chrX 132792989 132793314 -44180826 - L1MC/D LINE L1 -2226 5582 5261 10881 189 21 22 chrX 132793836 132795319 -44178821 + L1M2 LINE L1 2747 4231 -2060 5314 65 0 0 chrX 132795319 132795981 -44178159 + L1PA6 LINE L1 5487 6152 -2 10881 189 21 22 chrX 132795981 132797218 -44176922 + L1M2 LINE L1 4231 5464 -827 2581 118 3 3 chrX 132797218 132797582 -44176558 - THE1B LTR MaLR 0 364 1 10881 189 21 22 chrX 132797582 132797768 -44176372 + L1M2 LINE L1 5464 5649 -642 245 128 21 0 chrX 132797769 132797816 -44176324 + (TA)n Simple_repeat Simple_repeat 2 49 0 273 98 0 0 chrX 132798146 132798187 -44175953 + (TG)n Simple_repeat Simple_repeat 2 42 0 549 296 213 24 chrX 132798374 132798888 -44175252 - L2 LINE L2 -86 3227 2601 264 288 89 31 chrX 132798889 132799080 -44175060 - L1ME LINE L1 -224 5897 5696 919 278 0 0 chrX 132799178 132799401 -44174739 + MER58A DNA MER1_type 1 223 -1 4012 262 99 26 chrX 132799756 132802437 -44171703 - L1MEc LINE L1 -2432 3783 883 2210 186 62 2 chrX 132802437 132802841 -44171299 + MSTA LTR MaLR 1 428 0 4012 262 99 26 chrX 132802841 132803149 -44170991 - L1MEc LINE L1 -5332 883 599 466 231 10 10 chrX 132803150 132803254 -44170886 - MIR SINE MIR -149 113 10 189 270 30 70 chrX 132803301 132803401 -44170739 - L2 LINE L2 -217 3096 3001 1269 284 63 35 chrX 132804196 132804657 -44169483 - L2 LINE L2 0 3313 2840 1920 89 139 0 chrX 132804657 132804959 -44169181 + LTR7 LTR ERV1 1 344 -106 2752 85 122 5 chrX 132804959 132805360 -44168780 + LTR7 LTR ERV1 1 448 -2 19229 109 58 55 chrX 132805362 132808641 -44165499 + HERVH LTR ERV1 1 3290 -4423 3421 107 10 6 chrX 132808631 132809137 -44165003 + HERVH LTR ERV1 3492 3999 -3714 * 4491 135 1 1 chrX 132809135 132809794 -44164346 + HERVH LTR ERV1 4488 5146 -2567 1356 138 18 5 chrX 132809798 132810015 -44164125 + HERVH LTR ERV1 5600 5819 -1894 * 2511 87 48 13 chrX 132810013 132810392 -44163748 + HERVH LTR ERV1 7322 7713 0 1557 89 154 0 chrX 132810392 132810638 -44163502 + LTR7 LTR ERV1 1 284 -166 1157 64 6 13 chrX 132810648 132810805 -44163335 - LTR7 LTR ERV1 -2 448 293 1223 155 39 5 chrX 132810971 132811178 -44162962 + L1MC1 LINE L1 6114 6327 -6 453 229 70 38 chrX 132811405 132811562 -44162578 + MER103 DNA DNA 4 165 -1 226 366 19 47 chrX 132811596 132811809 -44162331 - L2 LINE L2 -556 2758 2552 213 42 104 21 chrX 132811813 132811861 -44162279 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 361 107 143 0 chrX 132812407 132812506 -44161634 - Alu SINE Alu 0 328 222 350 257 35 58 chrX 132812819 132812980 -44161160 + MIR SINE MIR 16 170 -68 334 292 22 0 chrX 132813057 132813146 -44160994 - L2 LINE L2 -2 3311 3221 481 254 37 44 chrX 132813199 132813388 -44160752 - MIR3 SINE MIR -63 145 5 503 182 86 25 chrX 132814173 132814335 -44159805 - MIR SINE MIR -50 212 31 553 301 75 5 chrX 132815761 132815972 -44158168 - MIR SINE MIR -15 247 23 224 250 36 0 chrX 132816814 132816870 -44157270 - L2 LINE L2 -4 3268 3211 326 295 53 32 chrX 132816974 132817164 -44156976 - HAL1 LINE L1 -1264 1243 1050 6722 17 0 0 chrX 132817552 132818270 -44155870 - L1PA3 LINE L1 0 6155 5438 1253 62 62 11 chrX 132818372 132818551 -44155589 + LTR7 LTR ERV1 261 448 -2 1557 89 154 0 chrX 132818561 132818807 -44155333 - LTR7 LTR ERV1 -166 284 1 2458 92 48 13 chrX 132818807 132819186 -44154954 - HERVH LTR ERV1 0 7713 7322 1430 124 18 5 chrX 132819184 132819401 -44154739 - HERVH LTR ERV1 -1894 5819 5600 * 4524 132 1 1 chrX 132819405 132820064 -44154076 - HERVH LTR ERV1 -2567 5146 4488 3363 116 8 8 chrX 132820062 132820570 -44153570 - HERVH LTR ERV1 -3714 3999 3492 * 736 148 34 20 chrX 132820560 132820709 -44153431 - HERVH LTR ERV1 -4423 3290 3140 * 462 306 23 68 chrX 132920832 132921051 -44053089 - MIR SINE MIR 0 262 54 278 337 10 0 chrX 132922505 132922603 -44051537 + L3 LINE CR1 1373 1471 -106 267 279 100 84 chrX 132922896 132923154 -44050986 - MIR3 SINE MIR -1 261 4 337 354 81 58 chrX 132923588 132923896 -44050244 - L2 LINE L2 -38 3234 2920 502 131 0 0 chrX 132923996 132924080 -44050060 - L1M3 LINE L1 -440 5740 5657 366 280 26 26 chrX 132924084 132924277 -44049863 - L1M4c LINE L1 -4165 2481 2289 1073 192 4 15 chrX 132924290 132924550 -44049590 - L1MA3 LINE L1 0 6305 6049 3480 147 6 14 chrX 132924608 132925232 -44048908 - L1MA2 LINE L1 -255 6049 5431 3424 250 55 13 chrX 132925313 132926790 -44047350 - L1M4c LINE L1 -4544 2102 551 233 292 174 21 chrX 132926838 132926982 -44047158 + L2 LINE L2 3091 3256 -16 604 280 32 39 chrX 132927021 132927300 -44046840 + L1ME LINE L1 580 856 -5778 655 184 42 111 chrX 132927314 132927531 -44046609 - MER58C DNA MER1_type -13 202 1 1345 285 40 30 chrX 132927531 132928237 -44045903 + L1ME LINE L1 850 1562 -5072 207 0 0 0 chrX 132928452 132928475 -44045665 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 524 324 86 23 chrX 132928492 132928887 -44045253 + L1ME LINE L1 1 420 -6122 298 247 0 0 chrX 132928939 132929020 -44045120 + L1ME LINE L1 3507 3587 -3057 38397 71 7 2 chrX 132929024 132935143 -44038997 + L1PA5 LINE L1 4 6153 -1 373 141 0 0 chrX 132935137 132935208 -44038932 + L1M2 LINE L1 5593 5663 -649 * 1590 176 62 102 chrX 132935232 132935649 -44038491 - L1MB7 LINE L1 -20 6164 5775 297 0 0 0 chrX 132935649 132935682 -44038458 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1590 176 62 102 chrX 132935682 132935831 -44038309 - L1MB7 LINE L1 -409 5775 5621 2508 146 36 2 chrX 132935989 132936660 -44037480 + L1MA10 LINE L1 5058 5750 -541 351 180 60 40 chrX 132936673 132936773 -44037367 + L1MA10 LINE L1 6180 6281 -53 22 0 0 0 chrX 132937024 132937046 -44037094 + AT_rich Low_complexity Low_complexity 1 22 0 2265 96 7 0 chrX 132937065 132937356 -44036784 + AluSg SINE Alu 2 294 -16 2308 113 7 0 chrX 132938269 132938579 -44035561 + AluSx SINE Alu 1 312 0 205 240 40 0 chrX 132938581 132938631 -44035509 - L3 LINE CR1 -3 1574 1523 435 276 35 0 chrX 132938836 132938952 -44035188 - MIR SINE MIR -68 140 21 220 239 0 0 chrX 132939228 132939274 -44034866 + L2 LINE L2 3215 3260 -12 498 249 92 29 chrX 132939947 132940120 -44034020 + MIR3 SINE MIR 18 201 -7 337 326 108 31 chrX 132941207 132941336 -44032804 - L2 LINE L2 0 3272 3134 2138 121 0 10 chrX 132941350 132941655 -44032485 + AluSx SINE Alu 1 302 -10 187 345 71 12 chrX 132941750 132941834 -44032306 - L2 LINE L2 -214 3058 2970 597 204 8 15 chrX 132941863 132941995 -44032145 + L1MB7 LINE L1 5974 6104 -80 547 157 17 122 chrX 132942160 132942332 -44031808 + L1MA9 LINE L1 6120 6273 -39 3643 140 45 9 chrX 132942559 132943208 -44030932 - L1PB4 LINE L1 -12 6144 5473 38256 72 7 6 chrX 132943275 132949419 -44024721 - L1PA6 LINE L1 -7 6147 1 8307 205 13 10 chrX 132949419 132951365 -44022775 - L1PB4 LINE L1 -665 5491 3544 2018 114 10 7 chrX 132951365 132951655 -44022485 + AluSx SINE Alu 1 291 -21 8307 205 13 10 chrX 132951655 132951830 -44022310 - L1PB4 LINE L1 -2612 3544 3371 1254 271 115 20 chrX 132954545 132955040 -44019100 + MER34 LTR ERV1 1 542 0 438 324 131 18 chrX 132955080 132955302 -44018838 - MIR SINE MIR -8 254 8 2411 86 10 0 chrX 132957968 132958272 -44015868 + AluSp SINE Alu 1 307 -6 409 288 52 52 chrX 132958921 132959074 -44015066 - MIR3 SINE MIR -18 190 38 622 224 28 88 chrX 132959858 132959965 -44014175 - MIR SINE MIR -7 255 143 2163 89 34 3 chrX 132959965 132960256 -44013884 - AluY SINE Alu -11 300 1 622 224 28 88 chrX 132960256 132960319 -44013821 - MIR SINE MIR -119 143 102 1494 197 27 90 chrX 132960319 132960731 -44013409 - MLT1B LTR MaLR -4 386 1 622 224 28 88 chrX 132960731 132960809 -44013331 - MIR SINE MIR -160 102 21 1069 157 31 195 chrX 132961118 132961565 -44012575 - MLT1A2 LTR MaLR 0 374 1 1662 163 53 34 chrX 132961770 132962125 -44012015 + MLT1A1 LTR MaLR 4 365 0 287 266 28 64 chrX 132962544 132962653 -44011487 + L2 LINE L2 3201 3305 -8 988 101 0 0 chrX 132962886 132963024 -44011116 + AluSg/x SINE Alu 169 306 -6 395 269 11 0 chrX 132963595 132963688 -44010452 + MER91A DNA MER1_type 1 94 -102 221 381 191 0 chrX 132963913 132963997 -44010143 - L2 LINE L2 -36 3236 3137 180 239 0 133 chrX 132964144 132964257 -44009883 - L2 LINE L2 -226 3046 2949 798 177 64 0 chrX 132964324 132964465 -44009675 + FRAM SINE Alu 5 154 -12 26 88 0 0 chrX 132964468 132964536 -44009604 + AT_rich Low_complexity Low_complexity 1 68 0 936 177 23 6 chrX 132964542 132964717 -44009423 - MER2 DNA MER2_type -164 181 4 202 355 122 6 chrX 132964849 132965021 -44009119 - L2 LINE L2 -545 2769 2578 1278 187 0 0 chrX 132965021 132965240 -44008900 + MER58A DNA MER1_type 1 219 -5 424 254 112 42 chrX 132965366 132965626 -44008514 - L1MC5 LINE L1 -122 7839 7562 2194 108 3 16 chrX 132965654 132965968 -44008172 + AluSg SINE Alu 1 310 0 444 300 109 13 chrX 132965988 132966218 -44007922 - MIR SINE MIR -10 252 1 248 221 200 48 chrX 132966245 132966390 -44007750 - L2 LINE L2 -821 2493 2327 382 323 55 0 chrX 132966406 132966570 -44007570 - L2 LINE L2 -605 2709 2537 326 332 161 29 chrX 132966610 132966920 -44007220 - L2 LINE L2 -410 2904 2554 1573 250 62 48 chrX 132966992 132967559 -44006581 + MLT1G LTR MaLR 16 590 0 354 190 44 127 chrX 132967728 132967886 -44006254 - MIR SINE MIR -24 238 94 207 246 29 43 chrX 132971219 132971288 -44002852 - L2 LINE L2 -4 3268 3201 790 296 40 4 chrX 132971796 132972022 -44002118 + MIR SINE MIR 28 261 -1 375 315 84 14 chrX 132972071 132972214 -44001926 + MIR3 SINE MIR 47 199 -9 333 68 0 0 chrX 132973422 132973466 -44000674 + (CA)n Simple_repeat Simple_repeat 2 45 0 270 337 90 60 chrX 132973474 132973741 -44000399 + L2 LINE L2 2998 3272 0 510 267 27 75 chrX 132974636 132974677 -43999463 + MER5B DNA MER1_type 1 42 -136 328 82 0 0 chrX 132974677 132974726 -43999414 + L1PA5 LINE L1 6103 6151 -3 510 267 27 75 chrX 132974726 132974871 -43999269 + MER5B DNA MER1_type 42 178 0 382 298 42 47 chrX 132974875 132975066 -43999074 - L2 LINE L2 -421 2893 2704 282 238 32 0 chrX 132975219 132975282 -43998858 + MIR3 SINE MIR 114 178 -30 2686 29 0 3 chrX 132977514 132977820 -43996320 - AluY SINE Alu -5 306 2 715 251 46 42 chrX 132978409 132978589 -43995551 + MIR SINE MIR 3 186 -76 219 36 0 0 chrX 132978589 132978617 -43995523 + (TA)n Simple_repeat Simple_repeat 2 29 0 715 251 46 42 chrX 132978617 132978695 -43995445 + MIR SINE MIR 186 262 0 454 293 40 13 chrX 132978689 132978839 -43995301 - L2 LINE L2 -5 3308 3155 * 648 184 22 29 chrX 132980074 132980210 -43993930 + MIR SINE MIR 11 145 -117 825 251 62 88 chrX 132980249 132980545 -43993595 + LTR33A LTR ERVL 3 280 -243 1340 139 105 3 chrX 132980545 132980839 -43993301 - MER33 DNA MER1_type 0 324 1 825 251 62 88 chrX 132980839 132981077 -43993063 + LTR33A LTR ERVL 280 523 0 336 292 10 0 chrX 132981077 132981173 -43992967 + MIR SINE MIR 159 255 -7 544 274 55 90 chrX 132981569 132981771 -43992369 + MIR SINE MIR 11 204 -58 2255 61 0 11 chrX 132981771 132982051 -43992089 + AluY SINE Alu 35 311 0 544 274 55 90 chrX 132982051 132982103 -43992037 + MIR SINE MIR 204 256 -6 647 152 13 33 chrX 132982864 132983015 -43991125 - L1MA7 LINE L1 0 6291 6144 1620 187 3 18 chrX 132983294 132983578 -43990562 + AluJo SINE Alu 1 280 -32 207 0 0 0 chrX 132983579 132983602 -43990538 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 560 269 135 37 chrX 132983710 132984059 -43990081 - MLT1J2 LTR MaLR 0 450 68 206 265 0 0 chrX 132985683 132985732 -43988408 - L2 LINE L2 -2 3311 3263 622 299 42 9 chrX 132985792 132986006 -43988134 + MIR SINE MIR 37 257 -5 22 0 0 0 chrX 132986179 132986201 -43987939 + AT_rich Low_complexity Low_complexity 1 22 0 709 301 50 5 chrX 132986553 132986772 -43987368 + MIR SINE MIR 22 250 -12 198 238 0 30 chrX 132986785 132986886 -43987254 + CT-rich Low_complexity Low_complexity 2 99 0 383 200 0 0 chrX 132986966 132987041 -43987099 - MIR SINE MIR -10 252 178 1424 53 11 26 chrX 132987600 132987790 -43986350 + AluY SINE Alu 114 300 -11 1106 244 8 16 chrX 132988140 132988382 -43985758 - MIR SINE MIR -21 241 2 214 211 58 19 chrX 132988501 132988553 -43985587 + L2 LINE L2 3257 3310 -3 1244 261 80 11 chrX 132988880 132989256 -43984884 - MLT1I LTR MaLR -1 408 7 2101 108 11 4 chrX 132989752 132990070 -43984070 + AluSg SINE Alu 1 320 0 3812 193 41 13 chrX 132990111 132991089 -43983051 - L1MB5 LINE L1 -2 6172 5174 1528 212 7 10 chrX 132991091 132991379 -43982761 - AluJo SINE Alu -25 287 1 330 183 0 0 chrX 132991451 132991522 -43982618 + GA-rich Low_complexity Low_complexity 2 72 0 1548 266 68 46 chrX 132991542 132992332 -43981808 - L1M4 LINE L1 -5727 815 8 735 253 50 35 chrX 132992549 132992751 -43981389 + MIR SINE MIR 2 206 -56 995 265 43 17 chrX 132992772 132993074 -43981066 + LTR33 LTR ERVL 1 310 -211 246 225 0 28 chrX 132993120 132993191 -43980949 + LTR33 LTR ERVL 448 516 -5 822 295 42 4 chrX 132993492 132993733 -43980407 + MIR SINE MIR 3 252 -10 199 267 248 30 chrX 132994280 132994381 -43979759 - MIR SINE MIR -68 140 18 1910 135 54 37 chrX 132995222 132995571 -43978569 + MER34B LTR ERV1 4 358 -207 1177 334 28 36 chrX 132995584 132996191 -43977949 + L1PA16 LINE L1 53 654 -6185 355 316 0 22 chrX 132996203 132996342 -43977798 + L1PA16 LINE L1 1428 1563 -5276 303 122 0 0 chrX 132996664 132996713 -43977427 + (CAA)n Simple_repeat Simple_repeat 2 50 0 5371 215 30 24 chrX 132997098 132997402 -43976738 + L1PA16 LINE L1 1477 1778 -5091 3947 91 13 7 chrX 132997402 132997953 -43976187 + MER41A LTR ERV1 1 554 0 5371 215 30 24 chrX 132997953 132998189 -43975951 + L1PA16 LINE L1 1778 2011 -4858 2227 100 0 13 chrX 132998189 132998507 -43975633 + AluSg SINE Alu 1 310 0 5371 215 30 24 chrX 132998507 132999407 -43974733 + L1PA16 LINE L1 2011 2904 -3965 189 0 0 0 chrX 132999407 132999428 -43974712 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 5371 215 30 24 chrX 132999428 133000708 -43973432 + L1PA16 LINE L1 2904 4175 -2694 225 0 0 0 chrX 133000708 133000733 -43973407 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 5371 215 30 24 chrX 133000733 133002219 -43971921 + L1PA16 LINE L1 4175 5783 -1086 217 164 27 27 chrX 133002219 133002292 -43971848 + (TATAA)n Simple_repeat Simple_repeat 2 74 0 5371 215 30 24 chrX 133002292 133003380 -43970760 + L1PA16 LINE L1 5783 6863 -6 1052 128 0 31 chrX 133003381 133003407 -43970733 + MER34B LTR ERV1 348 373 -192 2447 111 11 3 chrX 133003407 133003768 -43970372 + THE1B LTR MaLR 1 364 0 1052 128 0 31 chrX 133003768 133003936 -43970204 + MER34B LTR ERV1 373 536 -29 283 378 0 27 chrX 133003944 133004055 -43970085 - L2 LINE L2 -31 3241 3134 676 297 25 5 chrX 133004149 133004351 -43969789 - MIR SINE MIR 0 262 57 22 0 0 0 chrX 133004402 133004424 -43969716 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chrX 133005153 133005181 -43968959 + AT_rich Low_complexity Low_complexity 1 28 0 318 179 0 18 chrX 133005574 133005630 -43968510 - MER5A DNA MER1_type -5 184 130 334 264 56 35 chrX 133005648 133005792 -43968348 + LTR16A LTR ERVL 21 167 -283 1530 310 24 42 chrX 133005793 133006460 -43967680 + HERV16 LTR ERVL 562 1217 -3779 2418 42 56 0 chrX 133006460 133006748 -43967392 + AluY SINE Alu 1 304 -7 1530 310 24 42 chrX 133006748 133006799 -43967341 + HERV16 LTR ERVL 1217 1267 -3729 19101 169 47 10 chrX 133006799 133008545 -43965595 + L1M1 LINE L1 1 1681 -5884 204 40 0 0 chrX 133008545 133008570 -43965570 + (GA)n Simple_repeat Simple_repeat 2 26 0 19101 169 47 10 chrX 133008570 133011073 -43963067 + L1M1 LINE L1 1681 4425 -3140 9634 171 8 1 chrX 133011071 133012905 -43961235 + L1PA14 LINE L1 1841 3688 -2458 * 2308 99 23 0 chrX 133012920 133013224 -43960916 + AluSp SINE Alu 2 312 -1 322 183 12 12 chrX 133013226 133013308 -43960832 + GA-rich Low_complexity Low_complexity 3 84 0 * 360 0 0 0 chrX 133013298 133013338 -43960802 + (GAAAA)n Simple_repeat Simple_repeat 4 43 0 8992 158 12 3 chrX 133013338 133015816 -43958324 + L1PA14 LINE L1 3681 6156 -5 382 250 60 7 chrX 133015817 133016012 -43958128 - LTR53 LTR ERVL -95 424 189 275 137 0 0 chrX 133016330 133016381 -43957759 + L1MB1 LINE L1 6113 6163 -5 452 226 0 39 chrX 133016713 133016815 -43957325 + MIR SINE MIR 141 238 -24 914 241 49 0 chrX 133017505 133017708 -43956432 + MIR SINE MIR 50 262 0 316 377 95 30 chrX 133017769 133018199 -43955941 + L2 LINE L2 2815 3272 0 3211 256 8 24 chrX 133019286 133020091 -43954049 + L1PA15 LINE L1 1 792 -5995 4473 217 13 32 chrX 133020131 133021456 -43952684 + L1PA15 LINE L1 1212 2519 -4278 10708 210 7 15 chrX 133021489 133022010 -43952130 + L1PA15 LINE L1 3398 3922 -2894 2140 157 0 0 chrX 133022010 133022322 -43951818 + AluSx SINE Alu 1 312 0 10708 210 7 15 chrX 133022322 133022839 -43951301 + L1PA15 LINE L1 3922 4442 -2374 2257 119 0 6 chrX 133022839 133023151 -43950989 + AluSq SINE Alu 4 313 0 10708 210 7 15 chrX 133023151 133025535 -43948605 + L1PA15 LINE L1 4442 6806 -10 843 286 91 19 chrX 133025563 133025990 -43948150 - LTR33 LTR ERVL -22 499 42 859 180 33 0 chrX 133026018 133026201 -43947939 + MER53 DNA DNA 1 189 0 290 356 85 0 chrX 133026864 133026982 -43947158 - L2 LINE L2 -4 3268 3141 * 709 186 11 62 chrX 133026968 133027145 -43946995 - MIR SINE MIR -27 235 68 2689 141 41 16 chrX 133027932 133028442 -43945698 + L1MA7 LINE L1 5614 6136 -155 365 101 0 14 chrX 133028456 133028525 -43945615 + (TA)n Simple_repeat Simple_repeat 1 68 0 298 234 13 0 chrX 133028567 133028644 -43945496 - MER103 DNA DNA -88 78 1 201 95 95 0 chrX 133029619 133029661 -43944479 - L2 LINE L2 -4 3309 3264 181 360 0 10 chrX 133030152 133030252 -43943888 - MIR SINE MIR -54 208 110 386 302 160 13 chrX 133030358 133030583 -43943557 - MIR SINE MIR 0 262 5 557 265 40 0 chrX 133031130 133031281 -43942859 + MIR3 SINE MIR 40 196 -12 356 322 20 27 chrX 133032667 133032816 -43941324 - MIR3 SINE MIR -7 201 54 7869 22 1 0 chrX 133032817 133033778 -43940362 - L1HS LINE L1 -1226 4920 3959 7649 12 0 0 chrX 133033776 133035038 -43939102 + L1HS LINE L1 4894 6155 0 * 474 301 23 68 chrX 133035956 133036175 -43937965 - MIR SINE MIR 0 262 54 278 337 10 0 chrX 133037629 133037727 -43936413 + L3 LINE CR1 1373 1471 -106 267 279 100 84 chrX 133038020 133038278 -43935862 - MIR3 SINE MIR -1 261 4 337 354 81 58 chrX 133038711 133039019 -43935121 - L2 LINE L2 -38 3234 2920 502 131 0 0 chrX 133039119 133039203 -43934937 - L1M3 LINE L1 -440 5740 5657 366 280 26 26 chrX 133039207 133039400 -43934740 - L1M4c LINE L1 -4165 2481 2289 1073 192 4 15 chrX 133039413 133039673 -43934467 - L1MA3 LINE L1 0 6305 6049 3480 147 6 14 chrX 133039731 133040355 -43933785 - L1MA2 LINE L1 -255 6049 5431 3424 250 55 13 chrX 133040436 133041913 -43932227 - L1M4c LINE L1 -4544 2102 551 233 292 174 21 chrX 133041961 133042105 -43932035 + L2 LINE L2 3091 3256 -16 604 280 32 39 chrX 133042144 133042423 -43931717 + L1ME LINE L1 580 856 -5778 632 189 42 111 chrX 133042437 133042654 -43931486 - MER58C DNA MER1_type -13 202 1 1345 285 40 30 chrX 133042654 133043360 -43930780 + L1ME LINE L1 850 1562 -5072 207 0 0 0 chrX 133043575 133043598 -43930542 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 524 324 86 23 chrX 133043615 133044010 -43930130 + L1ME LINE L1 1 420 -6122 298 247 0 0 chrX 133044062 133044143 -43929997 + L1ME LINE L1 3507 3587 -3057 38380 70 7 3 chrX 133044147 133050261 -43923879 + L1PA5 LINE L1 4 6146 -8 2167 249 48 15 chrX 133050266 133051177 -43922963 + L1ME LINE L1 3571 4511 -2133 * 3890 176 73 13 chrX 133051175 133052241 -43921899 + L1MB5 LINE L1 5058 6184 0 195 42 0 0 chrX 133052367 133052391 -43921749 + (CA)n Simple_repeat Simple_repeat 2 25 0 625 298 29 10 chrX 133052540 133052748 -43921392 + MIR SINE MIR 20 231 -31 417 381 52 18 chrX 133054608 133054994 -43919146 - L2 LINE L2 -938 2376 1978 1846 264 108 2 chrX 133055638 133056168 -43917972 + L1ME LINE L1 10 595 -5947 735 223 58 0 chrX 133056175 133056381 -43917759 + L1ME LINE L1 5117 5334 -1310 1740 197 36 80 chrX 133056384 133056527 -43917613 + L1MB7 LINE L1 4753 4901 -1277 1996 129 3 0 chrX 133056527 133056813 -43917327 - AluSc SINE Alu -22 287 1 1740 197 36 80 chrX 133056813 133057539 -43916601 + L1MB7 LINE L1 4901 5565 -613 908 215 5 0 chrX 133057550 133057741 -43916399 + L1PB1 LINE L1 6 197 -6666 * 14809 194 13 8 chrX 133057738 133062755 -43911385 + L1PB1 LINE L1 1392 6489 -378 1948 125 0 3 chrX 133062756 133063084 -43911056 + L1PB1 LINE L1 6561 6887 0 2406 219 41 14 chrX 133063084 133063641 -43910499 + L1MB7 LINE L1 5556 6127 -57 361 257 99 0 chrX 133063641 133063742 -43910398 - L1PB4 LINE L1 0 6156 6046 237 161 36 18 chrX 133063790 133063846 -43910294 + L1MB8 LINE L1 6105 6161 -17 278 156 0 0 chrX 133063873 133063918 -43910222 - Tigger1 DNA MER2_type -2373 45 1 572 326 92 45 chrX 133063918 133064387 -43909753 + L2 LINE L2 1796 2286 -1028 22 0 0 0 chrX 133064534 133064556 -43909584 + AT_rich Low_complexity Low_complexity 1 22 0 181 270 0 0 chrX 133064888 133064925 -43909215 + L2 LINE L2 2323 2359 -955 764 320 17 0 chrX 133064962 133065193 -43908947 + MIR SINE MIR 4 238 -24 216 403 25 0 chrX 133065237 133065396 -43908744 + L2 LINE L2 2367 2529 -785 220 376 35 35 chrX 133065441 133065526 -43908614 - L2 LINE L2 -49 3223 3139 320 335 74 42 chrX 133065728 133066059 -43908081 - L2 LINE L2 -212 3060 2716 5445 257 85 4 chrX 133066245 133067560 -43906580 + L1PB4 LINE L1 2 1423 -5426 545 68 0 14 chrX 133067561 133067634 -43906506 - THE1C LTR MaLR 0 364 293 3133 30 0 0 chrX 133067634 133068005 -43906135 - L1PA3 LINE L1 0 6155 5785 4185 21 2 0 chrX 133068005 133068711 -43905429 + L1P1 LINE L1 5033 5739 -416 2172 94 16 7 chrX 133068712 133069021 -43905119 - THE1C LTR MaLR -62 313 2 2333 176 19 4 chrX 133069022 133069487 -43904653 + L1PB4 LINE L1 1420 1891 -4958 44 20 0 0 chrX 133069487 133069538 -43904602 + AT_rich Low_complexity Low_complexity 1 51 0 328 237 0 0 chrX 133069540 133069599 -43904541 + L1 LINE L1 1064 1122 -5727 41 21 0 0 chrX 133069599 133069647 -43904493 + AT_rich Low_complexity Low_complexity 1 48 0 4630 194 33 23 chrX 133069647 133071261 -43902879 + L1 LINE L1 1896 3522 -3326 2064 134 3 0 chrX 133071261 133071568 -43902572 + AluSp SINE Alu 1 308 -5 5901 185 13 7 chrX 133071668 133072856 -43901284 + L1 LINE L1 4542 5736 -1112 11796 207 24 9 chrX 133072861 133073769 -43900371 + L1PB4 LINE L1 3300 4193 -2665 2111 118 7 0 chrX 133073769 133074058 -43900082 - AluSx SINE Alu -21 291 1 11796 207 24 9 chrX 133074058 133076004 -43898136 + L1PB4 LINE L1 4193 6193 -665 40060 73 7 6 chrX 133076004 133082149 -43891991 + L1PA5 LINE L1 1 6147 -7 3677 140 45 9 chrX 133082216 133082865 -43891275 + L1PB4 LINE L1 6175 6846 -12 609 151 17 122 chrX 133083094 133083266 -43890874 - L1MA9 LINE L1 -39 6273 6120 641 204 8 15 chrX 133083431 133083563 -43890577 - L1MB7 LINE L1 -80 6104 5974 187 345 71 12 chrX 133083592 133083676 -43890464 + L2 LINE L2 2970 3058 -214 2116 121 0 10 chrX 133083771 133084076 -43890064 - AluSx SINE Alu -10 302 1 340 326 108 31 chrX 133084090 133084219 -43889921 + L2 LINE L2 3134 3272 0 494 249 92 29 chrX 133085306 133085479 -43888661 - MIR3 SINE MIR -7 201 18 217 239 0 0 chrX 133086154 133086200 -43887940 - L2 LINE L2 -12 3260 3215 431 276 35 0 chrX 133086476 133086592 -43887548 + MIR SINE MIR 21 140 -68 205 240 40 0 chrX 133086797 133086847 -43887293 + L3 LINE CR1 1523 1574 -3 2253 114 7 0 chrX 133086852 133087160 -43886980 - AluSx SINE Alu -2 310 1 2259 96 7 0 chrX 133088073 133088364 -43885776 - AluSg SINE Alu -16 294 2 22 0 0 0 chrX 133088383 133088405 -43885735 + AT_rich Low_complexity Low_complexity 1 22 0 385 186 59 39 chrX 133088654 133088756 -43885384 - L1MA10 LINE L1 -51 6283 6180 2642 147 36 2 chrX 133088769 133089440 -43884700 - L1MA10 LINE L1 -541 5750 5058 1749 176 62 102 chrX 133089598 133089747 -43884393 + L1MB7 LINE L1 5621 5775 -409 297 0 0 0 chrX 133089747 133089780 -43884360 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1749 176 62 102 chrX 133089780 133090197 -43883943 + L1MB7 LINE L1 5775 6164 -20 2553 175 29 20 chrX 133090221 133090286 -43883854 - L1M2 LINE L1 -628 5663 5600 950 42 0 0 chrX 133090286 133090405 -43883735 - L1PA4 LINE L1 -1 6154 6036 2553 175 29 20 chrX 133090405 133091301 -43882839 - L1M2 LINE L1 -691 5600 4691 234 196 35 189 chrX 133091306 133091449 -43882691 + MER21A LTR ERV1 417 537 -394 316 135 14 14 chrX 133091458 133091532 -43882608 + L1MA4 LINE L1 6227 6300 0 1824 230 49 18 chrX 133091547 133092385 -43881755 - L1M2 LINE L1 -1462 4684 2489 195 42 0 0 chrX 133092424 133092448 -43881692 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 7043 104 6 6 chrX 133092448 133093476 -43880664 - L1MA1 LINE L1 -3 6299 5272 1630 217 9 7 chrX 133093459 133093892 -43880248 - L1 LINE L1 -2691 4874 4441 * 1348 86 0 6 chrX 133093914 133094089 -43880051 - AluSp SINE Alu -3 310 137 956 184 5 20 chrX 133094090 133094286 -43879854 - L1 LINE L1 -3184 4381 4189 * 4027 237 13 3 chrX 133094283 133095140 -43879000 - L1 LINE L1 -6268 1297 433 11041 150 5 6 chrX 133095214 133096936 -43877204 - LTR57-int LTR ERVL -2412 2931 1212 7254 144 16 22 chrX 133096949 133098216 -43875924 - LTR57-int LTR ERVL -4083 1260 2 1796 142 26 23 chrX 133098217 133098527 -43875613 - LTR57 LTR ERVL 0 411 101 1592 263 15 19 chrX 133098543 133099022 -43875118 - L1PA12 LINE L1 -4923 2658 2182 342 306 10 0 chrX 133099256 133099354 -43874786 - L1PA12 LINE L1 -5399 2182 2084 1183 339 41 14 chrX 133099506 133100073 -43874067 - L1PA12 LINE L1 -6203 1371 790 2211 112 37 0 chrX 133100203 133100551 -43873589 + L1MA6 LINE L1 5940 6300 0 1895 245 77 27 chrX 133100604 133101265 -43872875 - L1MEc LINE L1 -5234 1162 469 532 201 126 31 chrX 133101265 133101424 -43872716 + MLT1B LTR MaLR 2 175 -215 858 150 0 0 chrX 133101428 133101581 -43872559 + CT-rich Low_complexity Low_complexity 2 154 0 682 260 30 15 chrX 133101582 133101782 -43872358 + MLT1B LTR MaLR 188 390 0 1280 248 63 63 chrX 133101785 133102213 -43871927 - L1MEc LINE L1 -5925 471 44 465 295 87 19 chrX 133102457 133102664 -43871476 - MIR SINE MIR -6 256 36 402 347 83 0 chrX 133102698 133102842 -43871298 + L2 LINE L2 3117 3272 0 604 204 128 23 chrX 133103712 133103884 -43870256 - MIR3 SINE MIR -3 205 16 253 336 164 18 chrX 133104081 133104307 -43869833 + L2 LINE L2 1218 1476 -1838 884 361 40 25 chrX 133104444 133105014 -43869126 + L2 LINE L2 1709 2287 -1027 1679 118 0 12 chrX 133105021 133105267 -43868873 - AluSg/x SINE Alu 0 312 70 297 396 21 27 chrX 133105408 133105595 -43868545 + L2 LINE L2 2637 2822 -492 24 32 0 0 chrX 133105973 133106004 -43868136 + AT_rich Low_complexity Low_complexity 1 31 0 329 354 164 11 chrX 133106038 133106391 -43867749 + L2 LINE L2 2471 2877 -437 226 51 0 169 chrX 133106476 133106535 -43867605 + L1PA8 LINE L1 6124 6172 0 285 333 12 0 chrX 133106610 133106691 -43867449 + L2 LINE L2 3230 3311 -2 2014 180 41 53 chrX 133107519 133108030 -43866110 - MLT1D LTR MaLR 0 505 1 991 265 4 16 chrX 133109036 133109175 -43864965 - MLT2F LTR ERVL -9 654 518 2270 145 20 32 chrX 133109175 133109523 -43864617 - MER57A LTR ERV1 0 403 59 2428 94 0 0 chrX 133109523 133109830 -43864310 + AluSx SINE Alu 1 307 -5 2270 145 20 32 chrX 133109830 133109889 -43864251 - MER57A LTR ERV1 -344 59 1 991 265 4 16 chrX 133109889 133110006 -43864134 - MLT2F LTR ERVL -145 518 401 326 385 0 0 chrX 133110039 133110135 -43864005 - MLT2F LTR ERVL -218 445 350 5582 238 60 31 chrX 133110143 133111678 -43862462 - ERVL LTR ERVL -1193 4571 2993 1400 247 44 15 chrX 133111689 133112204 -43861936 - ERVL LTR ERVL -3223 2541 1912 455 200 22 26 chrX 133112616 133112794 -43861346 + MER34C LTR ERV1 11 251 -409 6670 59 0 5 chrX 133112896 133113738 -43860402 - L1PA6 LINE L1 -4 6150 5313 728 218 86 50 chrX 133113742 133114022 -43860118 + MER34B LTR ERV1 270 559 -6 1351 307 82 12 chrX 133114036 133114547 -43859593 - MLT2F LTR ERVL -103 560 14 290 299 78 58 chrX 133114557 133114711 -43859429 - L2 LINE L2 0 3272 3116 280 300 98 35 chrX 133114854 133115138 -43859002 - L2 LINE L2 -221 3051 2715 184 359 95 18 chrX 133115277 133115561 -43858579 - L2 LINE L2 -882 2432 2127 1031 81 0 0 chrX 133115586 133115722 -43858418 + AluSg/x SINE Alu 177 312 0 294 360 105 5 chrX 133115727 133115927 -43858213 - L2 LINE L2 -1232 2082 1863 252 352 48 0 chrX 133117446 133117551 -43856589 + MER91C DNA MER1_type 31 140 0 1972 108 0 87 chrX 133117896 133118219 -43855921 - AluSx SINE Alu -17 295 1 1606 217 19 31 chrX 133118575 133118934 -43855206 - MLT1A1 LTR MaLR 0 365 11 937 222 133 7 chrX 133118980 133119273 -43854867 - L1M4 LINE L1 -2215 3931 3602 1328 188 89 63 chrX 133119292 133119706 -43854434 + MSTC LTR MaLR 4 428 0 4928 240 88 36 chrX 133119706 133121275 -43852865 + MSTC-int LTR MaLR 1 1651 0 899 201 34 57 chrX 133121277 133121540 -43852600 + MSTC LTR MaLR 3 259 -169 485 285 89 33 chrX 133121575 133122151 -43851989 - L1M2 LINE L1 -738 5553 4942 453 155 24 0 chrX 133122278 133122362 -43851778 - L1MB7 LINE L1 -25 6159 6074 309 253 0 53 chrX 133122386 133122481 -43851659 - L1MC4 LINE L1 -1339 6703 6614 * 407 256 0 0 chrX 133122451 133122541 -43851599 + L1MC4 LINE L1 6614 6703 -1339 302 277 0 53 chrX 133122542 133122636 -43851504 + L1MC4 LINE L1 6615 6703 -1339 2162 176 70 157 chrX 133122657 133123050 -43851090 - L1MB7 LINE L1 -175 6009 5724 816 107 0 0 chrX 133123050 133123171 -43850969 + (TA)n Simple_repeat Simple_repeat 2 122 0 2162 176 70 157 chrX 133123171 133123605 -43850535 - L1MB7 LINE L1 -460 5724 5254 1160 233 44 100 chrX 133123609 133124101 -43850039 + MLT1D LTR MaLR 1 430 -37 665 299 41 0 chrX 133124132 133124326 -43849814 - LTR16A LTR ERVL -19 431 230 567 355 71 29 chrX 133125367 133125749 -43848391 - LTR16B LTR ERVL -2 462 106 2901 13 0 0 chrX 133125749 133126067 -43848073 - AluYb8 SINE Alu 0 318 1 567 355 71 29 chrX 133126067 133126173 -43847967 - LTR16B LTR ERVL -358 106 6 540 244 16 0 chrX 133126897 133127024 -43847116 + MIR SINE MIR 116 244 -18 1972 177 5 11 chrX 133127166 133127533 -43846607 - MLT1A1 LTR MaLR 0 365 1 1750 37 0 0 chrX 133127899 133128117 -43846023 - L1P2 LINE L1 -683 5471 5254 396 0 0 0 chrX 133128163 133128207 -43845933 + (TA)n Simple_repeat Simple_repeat 2 45 0 33 43 0 0 chrX 133128234 133128281 -43845859 + AT_rich Low_complexity Low_complexity 1 47 0 4865 45 5 5 chrX 133130034 133130639 -43843501 - L1PA5 LINE L1 -3 6151 5547 1788 33 0 0 chrX 133130639 133130853 -43843287 + L1PA5 LINE L1 5343 5556 -598 21 36 0 0 chrX 133130982 133131010 -43843130 + AT_rich Low_complexity Low_complexity 1 28 0 389 292 52 85 chrX 133131800 133132491 -43841649 + HAL1 LINE L1 967 1634 -873 1715 119 61 51 chrX 133132500 133132642 -43841498 + AluSq SINE Alu 1 140 -173 243 0 0 0 chrX 133132642 133132669 -43841471 + (CAA)n Simple_repeat Simple_repeat 2 28 0 1715 119 61 51 chrX 133132669 133132820 -43841320 + AluSq SINE Alu 140 297 -16 248 396 42 0 chrX 133133149 133133293 -43840847 - L2 LINE L2 -7 3265 3116 2800 13 0 0 chrX 133133665 133133972 -43840168 + AluY SINE Alu 1 307 -4 3527 204 120 97 chrX 133134736 133135301 -43838839 - L1MD3 LINE L1 0 7995 7445 526 232 9 9 chrX 133135301 133135413 -43838727 - MLT1F1 LTR MaLR -448 119 8 3527 204 120 97 chrX 133135413 133136082 -43838058 - L1MD3 LINE L1 -550 7445 6619 1002 174 37 69 chrX 133136092 133136310 -43837830 + MER20 DNA MER1_type 1 211 -8 348 138 0 0 chrX 133136334 133136399 -43837741 + L1MA9 LINE L1 5320 5384 -762 23 0 0 0 chrX 133136448 133136471 -43837669 + AT_rich Low_complexity Low_complexity 1 23 0 3403 191 72 33 chrX 133136471 133137318 -43836822 + L1MA9 LINE L1 5395 6274 -38 4167 235 76 13 chrX 133137328 133138650 -43835490 - L1MC3 LINE L1 -743 5403 5156 * 4671 207 42 37 chrX 133138643 133139926 -43834214 - L1MD1 LINE L1 0 6242 4949 194 0 39 0 chrX 133139926 133139952 -43834188 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4671 207 42 37 chrX 133139952 133140412 -43833728 - L1MD1 LINE L1 -1293 4949 4493 1540 237 39 24 chrX 133140416 133140923 -43833217 - L1MD1 LINE L1 -1821 4325 3811 1655 226 41 37 chrX 133140925 133141460 -43832680 - L1MC3 LINE L1 -975 5171 4635 724 254 78 0 chrX 133141890 133142083 -43832057 + LTR50 LTR ERVL 1 208 -587 446 256 33 52 chrX 133142323 133142575 -43831565 + LTR41 LTR ERVL 503 785 -10 668 286 87 0 chrX 133143232 133143438 -43830702 + MER58A DNA MER1_type 1 224 0 228 254 45 15 chrX 133143599 133143666 -43830474 - MIR3 SINE MIR -27 181 113 728 208 196 0 chrX 133143789 133143957 -43830183 + MIR SINE MIR 60 260 -2 362 329 18 116 chrX 133145028 133145143 -43828997 - L2 LINE L2 -19 3253 3179 2346 116 40 8 chrX 133145143 133145496 -43828644 - THE1B LTR MaLR 0 364 1 362 329 18 116 chrX 133145496 133145657 -43828483 - L2 LINE L2 -93 3179 3004 1083 169 0 0 chrX 133145816 133146005 -43828135 + L1MB3 LINE L1 5592 5780 -403 772 149 75 0 chrX 133146010 133146171 -43827969 + L1MB3 LINE L1 6002 6174 -9 334 350 34 17 chrX 133147346 133147523 -43826617 - MIR SINE MIR -72 190 11 21 0 0 0 chrX 133147861 133147882 -43826258 + AT_rich Low_complexity Low_complexity 1 21 0 188 33 0 33 chrX 133147984 133148014 -43826126 + (GATTG)n Simple_repeat Simple_repeat 1 29 0 734 194 0 47 chrX 133148814 133149025 -43825115 - L1MC5 LINE L1 -163 7798 7598 1592 176 9 16 chrX 133149176 133149499 -43824641 + L1MC1 LINE L1 6013 6333 0 683 180 31 57 chrX 133149661 133149855 -43824285 + MER53 DNA DNA 1 189 0 232 294 18 33 chrX 133150656 133150777 -43823363 - MIR SINE MIR -95 113 5 21 0 0 0 chrX 133151233 133151254 -43822886 + AT_rich Low_complexity Low_complexity 1 21 0 1213 166 59 4 chrX 133151767 133152038 -43822102 - L1MA8 LINE L1 -3 6288 6003 247 226 0 19 chrX 133152661 133152714 -43821426 - MIR SINE MIR -14 248 197 22 0 0 0 chrX 133153215 133153237 -43820903 + AT_rich Low_complexity Low_complexity 1 22 0 2214 116 6 31 chrX 133153393 133153713 -43820427 - AluSx SINE Alu 0 312 1 270 81 0 0 chrX 133153802 133153839 -43820301 + (GA)n Simple_repeat Simple_repeat 2 38 0 321 300 43 93 chrX 133154109 133154249 -43819891 - MIR3 SINE MIR -64 144 12 545 185 0 0 chrX 133154380 133154488 -43819652 + L1MA8 LINE L1 6183 6290 -1 555 325 93 33 chrX 133155579 133156119 -43818021 - L2 LINE L2 -254 3018 2449 1352 267 39 3 chrX 133156133 133156496 -43817644 + L2 LINE L2 2339 2714 -600 243 319 154 20 chrX 133156561 133156918 -43817222 + L1MC4 LINE L1 7494 7898 -144 25 51 0 0 chrX 133156988 133157027 -43817113 + AT_rich Low_complexity Low_complexity 1 39 0 974 272 133 26 chrX 133157030 133157583 -43816557 + L2 LINE L2 2704 3308 -5 247 276 40 0 chrX 133157599 133157675 -43816465 - L2 LINE L2 -935 2379 2301 277 367 135 26 chrX 133157905 133158791 -43815349 - L2 LINE L2 -1194 2120 1138 635 284 131 0 chrX 133158832 133159054 -43815086 + MIR SINE MIR 2 252 -10 217 361 68 59 chrX 133159071 133159395 -43814745 - L2 LINE L2 -2223 1091 765 2098 147 0 3 chrX 133159427 133159733 -43814407 - AluJb SINE Alu -1 311 7 335 217 24 0 chrX 133159735 133159818 -43814322 - MLT1C LTR MaLR -382 85 1 865 261 70 46 chrX 133160058 133160514 -43813626 - MLT1C LTR MaLR 0 467 1 1806 193 34 0 chrX 133163472 133163825 -43810315 + MLT1A1 LTR MaLR 1 365 0 324 298 236 23 chrX 133163850 133164108 -43810032 - L2 LINE L2 -4 3309 2997 518 201 223 0 chrX 133164132 133164271 -43809869 - MER58A DNA MER1_type -8 216 47 1475 288 79 83 chrX 133164281 133165284 -43808856 - L2 LINE L2 -338 2976 1978 3184 173 26 60 chrX 133166081 133166643 -43807497 - L1M4 LINE L1 -432 5746 5248 2457 97 3 0 chrX 133166643 133166953 -43807187 - AluSp SINE Alu -2 311 1 3184 173 26 60 chrX 133166953 133167562 -43806578 - L1M4 LINE L1 -930 5248 4620 1079 149 16 0 chrX 133167552 133167746 -43806394 - L1M3 LINE L1 -777 5557 5361 * 3399 183 19 54 chrX 133167862 133168432 -43805708 - L1M3 LINE L1 -813 5333 4802 1661 171 68 0 chrX 133168432 133168724 -43805416 - AluJb SINE Alu 0 312 1 3399 183 19 54 chrX 133168724 133169011 -43805129 - L1M3 LINE L1 -1344 4802 4506 37908 76 6 2 chrX 133169016 133175142 -43798998 + L1PA5 LINE L1 4 6154 0 25 0 0 0 chrX 133175142 133175167 -43798973 + AT_rich Low_complexity Low_complexity 1 25 0 1982 177 47 13 chrX 133175168 133175620 -43798520 - L1M3 LINE L1 -1632 4514 4048 611 274 10 5 chrX 133175768 133175969 -43798171 - L1M4 LINE L1 -6339 203 2 24 53 0 0 chrX 133176369 133176407 -43797733 + AT_rich Low_complexity Low_complexity 1 38 0 237 368 0 19 chrX 133176525 133176631 -43797509 - MIR SINE MIR -89 119 16 609 363 58 29 chrX 133177784 133178095 -43796045 - L2 LINE L2 -18 3254 2935 308 189 0 0 chrX 133178368 133178421 -43795719 - MIR SINE MIR -89 173 121 677 205 48 36 chrX 133178711 133178962 -43795178 + MER39 LTR ERV1 148 441 -266 21 36 0 0 chrX 133179264 133179292 -43794848 + AT_rich Low_complexity Low_complexity 1 28 0 208 314 0 0 chrX 133179438 133179489 -43794651 - MIR SINE MIR -142 66 16 1844 181 29 35 chrX 133179556 133180118 -43794022 - MLT2A2 LTR ERVL 0 554 1 2321 97 0 50 chrX 133180118 133180370 -43793770 - HERVL-A2 LTR ERVL 0 5654 5428 1942 131 7 39 chrX 133180370 133180675 -43793465 - AluSq SINE Alu -18 295 1 2321 97 0 50 chrX 133180675 133180824 -43793316 - HERVL-A2 LTR ERVL -226 5428 5273 2749 124 0 10 chrX 133180824 133181316 -43792824 - THE1B-int LTR MaLR -1150 430 2 2339 124 3 3 chrX 133181337 133181692 -43792448 - THE1B LTR MaLR -6 358 4 928 295 65 17 chrX 133182669 133183072 -43791068 + LTR16A LTR ERVL 16 437 -13 182 359 66 0 chrX 133185566 133185672 -43788468 + MIR SINE MIR 36 148 -60 413 311 14 20 chrX 133185701 133185849 -43788291 - MIR SINE MIR -11 251 105 210 118 0 0 chrX 133186714 133186748 -43787392 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 362 355 36 7 chrX 133186750 133186888 -43787252 - L2 LINE L2 -32 3240 3099 4914 42 7 0 chrX 133186977 133187571 -43786569 - L1PA7 LINE L1 -13 6141 5544 1895 96 0 0 chrX 133187571 133187934 -43786206 + L1PA7 LINE L1 5167 5529 -625 592 168 20 34 chrX 133188292 133188441 -43785699 + L1MA10 LINE L1 6180 6326 -8 291 329 0 0 chrX 133188443 133188513 -43785627 - L2 LINE L2 -16 3256 3187 348 157 100 0 chrX 133188534 133188604 -43785536 - MER116 DNA Mariner -3 77 1 228 260 0 52 chrX 133188633 133188710 -43785430 - MIR SINE MIR -93 169 97 456 304 25 0 chrX 133189227 133189385 -43784755 + MIR SINE MIR 101 262 0 199 366 10 50 chrX 133189573 133189775 -43784365 - L2 LINE L2 -188 3084 2891 1297 233 64 21 chrX 133190012 133190385 -43783755 + L1MC4 LINE L1 7418 7806 -236 821 122 90 0 chrX 133190696 133190852 -43783288 - L1MA4 LINE L1 -9 6291 6122 369 0 0 0 chrX 133191581 133191622 -43782518 + (TG)n Simple_repeat Simple_repeat 2 42 0 862 269 67 5 chrX 133191623 133191846 -43782294 - MIR SINE MIR -25 237 1 713 256 27 36 chrX 133191902 133192121 -43782019 + MIR SINE MIR 46 262 0 254 336 44 36 chrX 133192318 133192455 -43781685 - L2 LINE L2 -2 3270 3133 542 251 53 40 chrX 133192758 133192985 -43781155 + L2 LINE L2 3083 3312 -1 510 278 161 0 chrX 133193091 133193253 -43780887 - MIR SINE MIR -17 245 58 898 264 14 0 chrX 133194040 133194211 -43779929 - MER58A DNA MER1_type -2197 223 47 2291 59 0 14 chrX 133194211 133194497 -43779643 + AluY SINE Alu 1 282 -29 898 264 14 0 chrX 133194497 133194545 -43779595 - MER58A DNA MER1_type -2373 47 1 450 298 60 6 chrX 133195763 133195931 -43778209 + MIR3 SINE MIR 2 178 -30 384 264 91 18 chrX 133196005 133196115 -43778025 - L2 LINE L2 0 3272 3155 412 340 32 26 chrX 133196731 133196887 -43777253 - L2 LINE L2 -4 3268 3112 243 307 27 0 chrX 133196891 133196966 -43777174 + L2 LINE L2 3199 3275 -38 224 347 131 0 chrX 133196981 133197180 -43776960 - L2 LINE L2 -704 2610 2386 714 280 23 6 chrX 133197983 133198158 -43775982 + MIR3 SINE MIR 17 194 -14 2294 123 31 19 chrX 133198484 133198843 -43775297 + THE1B LTR MaLR 1 363 -1 228 268 27 54 chrX 133199722 133199834 -43774306 + MER20B DNA MER1_type 37 145 -638 509 302 50 11 chrX 133199989 133200171 -43773969 + MIR3 SINE MIR 5 193 -15 428 262 105 64 chrX 133200182 133200354 -43773786 + MER5A DNA MER1_type 8 186 -3 348 64 0 0 chrX 133201208 133201255 -43772885 + (CA)n Simple_repeat Simple_repeat 2 48 0 22390 75 6 6 chrX 133201451 133207599 -43766541 + L1PA6 LINE L1 11 6154 0 23 33 0 0 chrX 133207613 133207643 -43766497 + AT_rich Low_complexity Low_complexity 1 30 0 671 275 31 16 chrX 133208702 133208895 -43765245 + MIR SINE MIR 22 217 -45 409 275 30 15 chrX 133209275 133209406 -43764734 - MIR SINE MIR -36 226 94 1313 214 49 44 chrX 133209410 133209817 -43764323 + MLT2D LTR ERVL 6 414 0 29 60 0 0 chrX 133209828 133209878 -43764262 + AT_rich Low_complexity Low_complexity 1 50 0 510 190 0 0 chrX 133210491 133210591 -43763549 + L1PB4 LINE L1 6052 6151 -5 335 286 16 56 chrX 133210711 133210837 -43763303 - L2 LINE L2 -1 3271 3151 516 274 86 27 chrX 133211535 133211721 -43762419 + MIR SINE MIR 48 244 -18 1374 195 0 15 chrX 133212646 133212907 -43761233 + AluJo SINE Alu 21 277 -35 1659 148 21 10 chrX 133213117 133213408 -43760732 + THE1C LTR MaLR 82 375 0 21 0 0 0 chrX 133213836 133213857 -43760283 + AT_rich Low_complexity Low_complexity 1 21 0 834 192 0 0 chrX 133214231 133214377 -43759763 + FRAM SINE Alu 1 146 -30 291 28 0 0 chrX 133214382 133214418 -43759722 + (CA)n Simple_repeat Simple_repeat 2 37 0 388 333 48 12 chrX 133264803 133264968 -43709172 + MIR3 SINE MIR 34 204 -4 451 340 100 18 chrX 133264995 133265274 -43708866 + L2 LINE L2 2474 2775 -539 238 258 32 0 chrX 133265385 133265447 -43708693 + L2 LINE L2 3240 3303 -10 344 276 88 115 chrX 133265544 133265736 -43708404 + L2 LINE L2 3065 3251 -21 183 100 0 0 chrX 133265737 133265767 -43708373 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 5882 81 70 1 chrX 133265846 133267177 -43706963 + L1PA6 LINE L1 4764 6151 -3 4834 109 7 8 chrX 133267177 133267902 -43706238 + L1PA14 LINE L1 5436 6161 0 327 227 80 0 chrX 133270834 133270922 -43703218 + MIR SINE MIR 120 214 -48 276 163 58 70 chrX 133271693 133271779 -43702361 - LTR67 LTR ERVL -5 552 468 1824 177 43 0 chrX 133272061 133272181 -43701959 + AluJb SINE Alu 1 114 -198 189 0 0 0 chrX 133272181 133272202 -43701938 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1824 177 43 0 chrX 133272202 133272380 -43701760 + AluJb SINE Alu 114 312 0 210 194 0 0 chrX 133272494 133272530 -43701610 + MIR SINE MIR 157 192 -70 945 277 165 19 chrX 133272574 133273047 -43701093 - MER34 LTR ERV1 0 542 1 195 100 0 0 chrX 133273260 133273290 -43700850 - MIR SINE MIR -70 192 163 2546 108 78 8 chrX 133273405 133273805 -43700335 - MSTA LTR MaLR 0 428 1 353 298 16 33 chrX 133273805 133273926 -43700214 - MIR3 SINE MIR -80 128 10 672 280 37 12 chrX 133274033 133274258 -43699882 + MIR SINE MIR 32 262 0 281 364 115 52 chrX 133274395 133274664 -43699476 + L2 LINE L2 2977 3262 -10 5989 131 16 18 chrX 133274712 133275766 -43698374 + L1MC1 LINE L1 5282 6333 0 190 284 189 0 chrX 133276141 133276215 -43697925 + MIR3 SINE MIR 112 199 -9 1102 209 127 55 chrX 133276222 133276279 -43697861 - MLT1J1 LTR MaLR 0 446 395 2098 119 132 26 chrX 133276279 133276320 -43697820 - MSTA LTR MaLR 0 428 393 1680 120 117 11 chrX 133276320 133276586 -43697554 + AluSg SINE Alu 1 294 -16 2098 119 132 26 chrX 133276586 133276931 -43697209 - MSTA LTR MaLR -35 393 1 1102 209 127 55 chrX 133276931 133277289 -43696851 - MLT1J1 LTR MaLR -51 395 1 550 289 111 34 chrX 133277305 133277540 -43696600 - MIR SINE MIR -1 261 9 416 229 48 0 chrX 133278794 133278877 -43695263 - L2 LINE L2 -43 3229 3143 1955 162 52 31 chrX 133278960 133279502 -43694638 + MLT2A2 LTR ERVL 1 554 0 207 311 16 0 chrX 133279661 133279722 -43694418 - L2 LINE L2 -1 3312 3251 358 303 122 21 chrX 133280222 133280410 -43693730 - L1ME4a LINE L1 -224 5897 5691 852 261 84 4 chrX 133280421 133280659 -43693481 + MIR SINE MIR 6 262 0 423 320 0 0 chrX 133280675 133280825 -43693315 - L1ME4a LINE L1 -454 5667 5518 203 330 99 11 chrX 133280885 133280976 -43693164 + L2 LINE L2 3173 3271 -1 5350 145 30 4 chrX 133281078 133282304 -43691836 - L1PA16 LINE L1 -7 6159 4897 318 289 105 20 chrX 133282314 133282385 -43691755 - L1ME4a LINE L1 -2380 5428 5364 180 0 0 0 chrX 133282385 133282405 -43691735 + (TG)n Simple_repeat Simple_repeat 1 20 0 318 289 105 20 chrX 133282405 133282485 -43691655 - L1ME4a LINE L1 -2444 5364 5264 227 167 45 15 chrX 133282665 133282731 -43691409 - L1P LINE L1 -1098 5048 4981 377 345 9 52 chrX 133282778 133282972 -43691168 - L1ME4a LINE L1 -1254 4892 4708 2392 75 0 0 chrX 133282972 133283264 -43690876 - AluSg1 SINE Alu -17 292 1 377 345 9 52 chrX 133283264 133283298 -43690842 - L1ME4a LINE L1 -1438 4708 4674 331 267 170 22 chrX 133283488 133283623 -43690517 - MIR3 SINE MIR -25 183 29 333 264 115 0 chrX 133284761 133284848 -43689292 + MIR SINE MIR 36 132 -76 519 301 53 10 chrX 133285603 133286021 -43688119 - Tigger8 DNA MER2_type -11 655 188 25 31 0 0 chrX 133286167 133286199 -43687941 + AT_rich Low_complexity Low_complexity 1 32 0 485 256 133 28 chrX 133286218 133286357 -43687783 - HAL1 LINE L1 -39 2468 2345 324 0 0 0 chrX 133286357 133286393 -43687747 + (CA)n Simple_repeat Simple_repeat 2 37 0 485 256 133 28 chrX 133286393 133286651 -43687489 - HAL1 LINE L1 -162 2345 2029 2404 64 0 3 chrX 133286658 133286956 -43687184 - AluY SINE Alu -13 298 2 335 328 32 24 chrX 133287059 133287184 -43686956 + L2 LINE L2 3187 3312 -1 939 260 130 19 chrX 133287189 133287566 -43686574 - HAL1 LINE L1 -574 1933 1515 4136 179 19 16 chrX 133287597 133287620 -43686520 + L1MB8 LINE L1 4816 4837 -1341 1741 163 102 12 chrX 133287620 133287964 -43686176 + THE1C LTR MaLR 1 375 0 9745 118 32 21 chrX 133287964 133288426 -43685714 + THE1C-int LTR MaLR 1 456 -1124 2479 74 3 6 chrX 133288426 133288738 -43685402 + AluY SINE Alu 1 311 0 9745 118 32 21 chrX 133288738 133289838 -43684302 + THE1C-int LTR MaLR 456 1580 0 2318 131 19 13 chrX 133289838 133290211 -43683929 + THE1C LTR MaLR 1 375 0 4136 179 19 16 chrX 133290211 133291546 -43682594 + L1MB8 LINE L1 4836 6178 0 1121 247 107 27 chrX 133291917 133292358 -43681782 + MLT1H LTR MaLR 74 549 0 705 277 117 9 chrX 133292638 133292869 -43681271 - MIR SINE MIR -6 256 1 278 381 24 16 chrX 133293682 133293808 -43680332 - L2 LINE L2 -9 3263 3137 320 280 50 73 chrX 133293964 133294182 -43679958 + MLT1J1 LTR MaLR 216 428 -18 224 349 68 0 chrX 133294215 133294347 -43679793 + L2 LINE L2 2522 2662 -652 326 258 42 27 chrX 133294712 133294830 -43679310 + MIR SINE MIR 34 149 -63 218 299 112 0 chrX 133294856 133294963 -43679177 + MIR SINE MIR 134 252 -10 6322 40 13 17 chrX 133295770 133296553 -43677587 - LTR17 LTR ERV1 0 780 1 870 268 5 22 chrX 133296620 133296844 -43677296 - MER58A DNA MER1_type -4 220 1 441 66 0 0 chrX 133297363 133297424 -43676716 + (TG)n Simple_repeat Simple_repeat 2 62 0 224 329 96 83 chrX 133299321 133299695 -43674445 + L2 LINE L2 2877 3255 -17 3341 141 72 13 chrX 133299735 133300343 -43673797 + LTR48B LTR ERV1 1 644 0 189 0 0 0 chrX 133300357 133300378 -43673762 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 256 246 118 27 chrX 133300490 133300600 -43673540 - MIR SINE MIR -70 192 73 201 329 49 24 chrX 133300839 133300921 -43673219 - L2 LINE L2 -48 3224 3141 2070 117 3 0 chrX 133301292 133301605 -43672535 - AluSx SINE Alu 0 314 1 245 216 36 16 chrX 133301706 133301786 -43672354 + MIR SINE MIR 89 146 -62 603 233 8 0 chrX 133302321 133302441 -43671699 + FLAM_A SINE Alu 2 122 -11 2079 128 44 33 chrX 133302473 133302833 -43671307 - THE1B LTR MaLR 0 364 1 264 167 0 0 chrX 133304936 133304984 -43669156 + (TG)n Simple_repeat Simple_repeat 1 48 0 403 263 26 9 chrX 133306093 133306246 -43667894 - L1ME LINE L1 -644 5526 5362 * 1536 286 48 5 chrX 133306239 133307022 -43667118 - L1ME LINE L1 -1787 4359 3543 962 284 46 11 chrX 133307051 133307619 -43666521 - L1ME LINE L1 -2771 3375 2788 3688 143 5 5 chrX 133307849 133308470 -43665670 - L1MB2 LINE L1 -2 6169 5549 287 274 32 48 chrX 133308843 133308967 -43665173 - MIR SINE MIR -18 244 123 2340 254 61 10 chrX 133308987 133309673 -43664467 + HsTC2c DNA Tc2 1 721 -8 259 278 42 28 chrX 133309676 133309748 -43664392 - MIR SINE MIR -155 107 35 701 266 19 75 chrX 133310329 133310596 -43663544 + MIR SINE MIR 11 262 0 449 206 22 11 chrX 133310629 133310721 -43663419 - MIR SINE MIR -121 141 49 21 36 0 0 chrX 133312342 133312370 -43661770 + AT_rich Low_complexity Low_complexity 1 28 0 2335 103 0 3 chrX 133312422 133312723 -43661417 + AluSx SINE Alu 1 300 -12 346 351 7 0 chrX 133312865 133313013 -43661127 + (CA)n Simple_repeat Simple_repeat 2 150 0 777 252 61 17 chrX 133313848 133314078 -43660062 + MIR SINE MIR 20 259 -3 342 311 134 8 chrX 133314115 133314234 -43659906 + L2 LINE L2 3139 3272 0 186 321 0 0 chrX 133314254 133314310 -43659830 + L2 LINE L2 3250 3305 -8 183 231 19 19 chrX 133314910 133314962 -43659178 - L2 LINE L2 -5 3267 3216 196 169 17 17 chrX 133315934 133315993 -43658147 + GA-rich Low_complexity Low_complexity 2 60 0 492 321 30 46 chrX 133316057 133316319 -43657821 - L2 LINE L2 -36 3277 3020 378 242 148 40 chrX 133316447 133316596 -43657544 - MIR3 SINE MIR -31 177 13 251 256 29 41 chrX 133316665 133316773 -43657367 - MER5B DNA MER1_type 0 178 84 310 369 98 40 chrX 133316999 133317547 -43656593 - L2 LINE L2 -433 2881 2302 530 258 49 105 chrX 133317613 133317919 -43656221 - L2 LINE L2 -1 3312 3024 22 35 0 0 chrX 133318230 133318259 -43655881 + AT_rich Low_complexity Low_complexity 1 29 0 472 304 152 6 chrX 133319491 133319649 -43654491 + MER5A DNA MER1_type 9 189 0 186 43 0 0 chrX 133321543 133321566 -43652574 + (TC)n Simple_repeat Simple_repeat 2 24 0 2319 105 3 0 chrX 133321758 133322063 -43652077 + AluSg SINE Alu 1 306 -4 219 235 188 24 chrX 133324608 133324693 -43649447 - L2 LINE L2 -1 3271 3173 282 106 0 0 chrX 133325407 133325454 -43648686 + (CA)n Simple_repeat Simple_repeat 1 47 0 1465 269 65 99 chrX 133325581 133326158 -43647982 + L2 LINE L2 2469 2994 -319 2392 52 0 11 chrX 133326158 133326444 -43647696 + AluY SINE Alu 29 311 0 1465 269 65 99 chrX 133326444 133326754 -43647386 + L2 LINE L2 2994 3313 0 1014 167 6 0 chrX 133326928 133327108 -43647032 + MSTB LTR MaLR 1 181 -245 2039 128 14 0 chrX 133327109 133327433 -43646707 - AluSq SINE Alu 0 328 1 3192 94 22 2 chrX 133327451 133327909 -43646231 - L1PB1 LINE L1 -1 6150 5684 677 109 0 0 chrX 133327909 133328001 -43646139 + AluS SINE Alu 3 94 -218 1953 104 4 0 chrX 133328011 133328262 -43645878 + AluSx SINE Alu 49 300 -12 1290 100 0 0 chrX 133328266 133328456 -43645684 - L1PB1 LINE L1 -456 5695 5506 1668 131 159 25 chrX 133328460 133328781 -43645359 + THE1B LTR MaLR 1 364 0 6049 87 6 0 chrX 133328781 133329618 -43644522 + THE1B-int LTR MaLR 1 842 -738 1999 116 108 24 chrX 133329619 133329954 -43644186 + THE1B LTR MaLR 2 364 0 296 180 0 0 chrX 133329960 133330021 -43644119 + L1MA7 LINE L1 4217 4277 -1869 296 254 0 0 chrX 133330277 133330340 -43643800 - L2 LINE L2 0 3272 3210 327 25 0 0 chrX 133330471 133330511 -43643629 + (TG)n Simple_repeat Simple_repeat 2 41 0 323 236 7 114 chrX 133330528 133330668 -43643472 + MIR SINE MIR 122 246 -16 1891 130 49 0 chrX 133330908 133331192 -43642948 + AluSx SINE Alu 14 311 -1 3753 173 32 13 chrX 133331425 133332206 -43641934 + L1MA7 LINE L1 4534 5329 -817 429 198 0 0 chrX 133332207 133332288 -43641852 + AluSg/x SINE Alu 208 288 -24 2785 129 6 19 chrX 133332289 133332335 -43641805 + L1MA7 LINE L1 5321 5366 -925 2284 123 10 0 chrX 133332335 133332643 -43641497 + AluSx SINE Alu 1 311 -1 2785 129 6 19 chrX 133332643 133333075 -43641065 + L1MA7 LINE L1 5366 5793 -498 295 141 31 0 chrX 133333075 133333139 -43641001 + (TA)n Simple_repeat Simple_repeat 1 66 0 251 109 0 55 chrX 133333139 133333194 -43640946 + L1MA7 LINE L1 5782 5833 -479 * 6735 48 7 0 chrX 133333192 133334237 -43639903 + L1PA5 LINE L1 5119 6170 0 2277 124 74 54 chrX 133334240 133334701 -43639439 + L1MA7 LINE L1 5822 6291 0 972 277 120 49 chrX 133335038 133335248 -43638892 + Tigger8 DNA MER2_type 27 221 -445 1592 168 90 0 chrX 133335248 133335516 -43638624 + AluJo SINE Alu 1 292 -20 972 277 120 49 chrX 133335516 133335898 -43638242 + Tigger8 DNA MER2_type 221 661 -5 190 318 140 9 chrX 133335973 133336080 -43638060 + L2 LINE L2 2941 3061 -211 200 266 42 91 chrX 133336162 133336276 -43637864 + L2 LINE L2 3162 3269 -44 1934 175 39 21 chrX 133336276 133336659 -43637481 + MLT1B LTR MaLR 1 390 0 200 266 42 91 chrX 133336659 133336687 -43637453 + L2 LINE L2 3269 3297 -16 2150 133 3 0 chrX 133336751 133337081 -43637059 - THE1B LTR MaLR -6 358 28 996 214 19 28 chrX 133337081 133337296 -43636844 - MIR SINE MIR -17 245 33 1989 109 11 0 chrX 133337303 133337569 -43636571 - AluSq SINE Alu -44 269 1 554 269 11 65 chrX 133338046 133338085 -43636055 - MIR SINE MIR -81 181 141 2868 13 0 0 chrX 133338085 133338400 -43635740 - AluYb8 SINE Alu -3 315 1 554 269 11 65 chrX 133338400 133338546 -43635594 - MIR SINE MIR -121 141 6 311 234 36 146 chrX 133338950 133339142 -43634998 - L3 LINE CR1 -6 1571 1401 504 285 58 62 chrX 133339772 133340032 -43634108 - MIR SINE MIR -1 261 3 246 323 66 12 chrX 133340117 133340284 -43633856 + L2 LINE L2 2729 2904 -410 2268 99 13 22 chrX 133340948 133341260 -43632880 - AluSq SINE Alu -4 309 1 1176 265 12 3 chrX 133341288 133341612 -43632528 + L1ME3 LINE L1 5836 6162 0 182 284 114 0 chrX 133341914 133342002 -43632138 + L2 LINE L2 2960 3057 -215 560 270 151 0 chrX 133342073 133342232 -43631908 + MER5A DNA MER1_type 4 186 -3 271 259 129 41 chrX 133342249 133342396 -43631744 - MER5B DNA MER1_type -8 170 11 815 269 34 65 chrX 133343221 133343270 -43630870 + L1ME4a LINE L1 5440 5489 -632 1481 223 86 24 chrX 133343270 133343643 -43630497 - MSTD LTR MaLR 0 396 1 815 269 34 65 chrX 133343643 133343898 -43630242 + L1ME4a LINE L1 5489 5726 -395 2359 115 0 0 chrX 133343898 133344210 -43629930 + AluSx SINE Alu 1 312 0 815 269 34 65 chrX 133344210 133344364 -43629776 + L1ME4a LINE L1 5726 5883 -238 1944 77 33 0 chrX 133344505 133344777 -43629363 + L1PA13 LINE L1 5879 6159 -4 668 306 53 0 chrX 133347190 133347435 -43626705 + MIR SINE MIR 2 259 -3 527 75 12 12 chrX 133347676 133347756 -43626384 - MADE1 DNA Mariner 0 80 1 2583 55 0 0 chrX 133347815 133348125 -43626015 - AluY SINE Alu -1 310 1 1927 148 41 0 chrX 133348187 133348478 -43625662 + AluSx SINE Alu 3 305 -7 309 282 103 62 chrX 133348583 133348778 -43625362 - L3 LINE CR1 -104 1473 1271 184 314 7 73 chrX 133349621 133349758 -43624382 - L3b LINE CR1 -253 1330 1203 1386 194 49 9 chrX 133349984 133350309 -43623831 - L1MD3 LINE L1 -1 7994 7657 2275 110 20 0 chrX 133350323 133350624 -43623516 - AluSq SINE Alu -6 307 1 4726 138 23 26 chrX 133350698 133351581 -43622559 + L1MA8 LINE L1 5409 6288 -3 259 265 31 31 chrX 133351601 133351699 -43622441 + MER103 DNA DNA 67 164 -2 222 320 90 41 chrX 133352243 133352365 -43621775 + L2 LINE L2 3185 3312 -1 2133 144 0 0 chrX 133352381 133352686 -43621454 - AluSx SINE Alu -7 305 1 617 253 17 34 chrX 133352695 133352873 -43621267 - MIR SINE MIR -53 209 35 658 177 23 0 chrX 133354184 133354359 -43619781 - Charlie5 DNA MER1_type -30 2582 2404 1507 188 21 6 chrX 133354392 133354717 -43619423 - L1PBa LINE L1 -5817 1046 717 10890 79 1 1 chrX 133354963 133357745 -43616395 + L1PA7 LINE L1 3415 6196 0 2137 117 4 0 chrX 133357907 133358239 -43615901 + AluSp SINE Alu 1 333 0 421 290 45 97 chrX 133358982 133359292 -43614848 - L2 LINE L2 -8 3264 2971 * 559 333 84 35 chrX 133359287 133359656 -43614484 - L2 LINE L2 -685 2629 2243 1182 292 97 49 chrX 133359656 133359742 -43614398 + Tigger8 DNA MER2_type 1 81 -585 653 230 0 0 chrX 133359742 133359868 -43614272 - FLAM_A SINE Alu -7 126 1 1182 292 97 49 chrX 133359868 133360388 -43613752 + Tigger8 DNA MER2_type 81 636 -30 3024 163 22 70 chrX 133360445 133361027 -43613113 + MLT2B3 LTR ERVL 1 554 0 2426 116 5 30 chrX 133361081 133361452 -43612688 - THE1B LTR MaLR -2 362 1 660 127 64 0 chrX 133361989 133362154 -43611986 - AluSp/q SINE Alu 0 338 167 205 216 208 32 chrX 133362850 133362975 -43611165 - MIR SINE MIR -30 232 86 271 285 61 48 chrX 133363901 133364066 -43610074 - L2 LINE L2 -189 3083 2917 2342 89 16 3 chrX 133364186 133364490 -43609650 + AluSq SINE Alu 1 308 -5 261 83 0 0 chrX 133364774 133364810 -43609330 + (CA)n Simple_repeat Simple_repeat 1 36 0 908 249 8 13 chrX 133364839 133365076 -43609064 + L2 LINE L2 2647 2882 -432 300 233 0 70 chrX 133365819 133365905 -43608235 + L2 LINE L2 3234 3313 0 318 262 8 48 chrX 133366314 133366440 -43607700 + MIR3 SINE MIR 81 201 -7 422 294 8 0 chrX 133367099 133367225 -43606915 + MIR SINE MIR 24 150 -112 22 0 0 0 chrX 133367226 133367248 -43606892 + AT_rich Low_complexity Low_complexity 1 22 0 2378 88 7 0 chrX 133367283 133367577 -43606563 - AluSq SINE Alu -17 296 1 2515 123 7 25 chrX 133367580 133367985 -43606155 - L1PA15 LINE L1 -4 6161 5764 292 282 8 40 chrX 133367985 133368109 -43606031 + MIR SINE MIR 141 260 -2 556 314 96 5 chrX 133368247 133368467 -43605673 - MIR SINE MIR -21 241 2 366 286 71 24 chrX 133368941 133369109 -43605031 - MIR SINE MIR -12 250 75 1770 282 48 46 chrX 133369109 133369691 -43604449 + MER115 DNA AcHobo 22 604 -89 278 337 83 36 chrX 133369766 133370018 -43604122 + L2 LINE L2 3004 3267 -5 651 257 5 55 chrX 133370159 133370361 -43603779 - L1MC5 LINE L1 -48 7913 7722 2308 97 0 22 chrX 133370375 133370694 -43603446 + AluSx SINE Alu 1 312 0 2444 97 0 0 chrX 133371563 133371873 -43602267 + AluSx SINE Alu 1 310 -2 562 225 8 0 chrX 133372479 133372599 -43601541 - FLAM_A SINE Alu -12 121 1 213 109 79 10 chrX 133372784 133372885 -43601255 + (TA)n Simple_repeat Simple_repeat 2 109 0 395 197 33 82 chrX 133373373 133373495 -43600645 + MIR SINE MIR 34 149 -113 595 195 73 24 chrX 133373500 133373623 -43600517 + FLAM_A SINE Alu 1 129 -4 1848 112 10 64 chrX 133373632 133373763 -43600377 + AluSx SINE Alu 5 142 -201 2021 103 3 45 chrX 133373763 133374055 -43600085 + AluSx SINE Alu 1 280 -32 261 0 0 0 chrX 133374055 133374084 -43600056 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 1848 112 10 64 chrX 133374084 133374306 -43599834 + AluSx SINE Alu 140 343 0 393 248 14 14 chrX 133374365 133374506 -43599634 + L1MA4A LINE L1 5255 5395 -847 819 116 2 3 chrX 133374513 133374638 -43599502 + MLT1A1 LTR MaLR 1 111 -254 546 120 50 0 chrX 133374639 133374793 -43599347 - L1MA4A LINE L1 -72 6231 6009 328 111 0 0 chrX 133374793 133374838 -43599302 - AluSq/x SINE Alu -191 112 68 1283 205 4 12 chrX 133374844 133375093 -43599047 + MLT1A1 LTR MaLR 119 365 0 3033 152 19 58 chrX 133375183 133375892 -43598248 + L1MA4A LINE L1 5546 6284 -19 761 302 119 12 chrX 133375934 133376344 -43597796 + L1ME3 LINE L1 5494 5947 -215 384 302 0 0 chrX 133376613 133376719 -43597421 + MIR SINE MIR 151 256 -6 194 259 35 59 chrX 133376891 133376976 -43597164 - L3b LINE CR1 -199 1384 1302 962 233 102 65 chrX 133377047 133377477 -43596663 - MLT1H LTR MaLR 0 549 104 208 349 58 0 chrX 133377733 133377819 -43596321 - L2 LINE L2 -32 3240 3150 224 197 0 28 chrX 133378254 133378325 -43595815 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 857 224 6 0 chrX 133380729 133380899 -43593241 + L1MB4 LINE L1 4834 5004 -1142 1186 240 3 11 chrX 133380901 133381188 -43592952 - L1MA9 LINE L1 -55 6257 5973 1977 110 0 4 chrX 133381188 133381452 -43592688 - AluSg1 SINE Alu -46 263 1 24 32 0 0 chrX 133381602 133381633 -43592507 + AT_rich Low_complexity Low_complexity 1 31 0 4711 151 28 33 chrX 133381644 133381864 -43592276 + L1MB4 LINE L1 4986 5206 -974 2093 114 4 0 chrX 133381864 133382145 -43591995 + AluSx SINE Alu 24 305 -7 4711 151 28 33 chrX 133382145 133382422 -43591718 + L1MB4 LINE L1 5206 5483 -697 190 0 67 0 chrX 133382422 133382452 -43591688 + (CAA)n Simple_repeat Simple_repeat 2 33 0 4711 151 28 33 chrX 133382452 133383157 -43590983 + L1MB4 LINE L1 5483 6180 0 2204 119 0 13 chrX 133383179 133383504 -43590636 - AluSg SINE Alu 0 310 1 333 0 0 0 chrX 133383587 133383624 -43590516 + (CA)n Simple_repeat Simple_repeat 2 38 0 232 271 71 0 chrX 133383696 133383781 -43590359 + L2 LINE L2 3096 3186 -86 322 291 257 5 chrX 133383789 133383995 -43590145 + MIR SINE MIR 1 258 -4 32 0 0 0 chrX 133383998 133384030 -43590110 + AT_rich Low_complexity Low_complexity 1 32 0 202 216 0 0 chrX 133384061 133384112 -43590028 + (TTA)n Simple_repeat Simple_repeat 3 53 0 2528 126 19 9 chrX 133384131 133384553 -43589587 + L1MA5 LINE L1 5874 6299 -1 22 80 0 0 chrX 133384583 133384633 -43589507 + AT_rich Low_complexity Low_complexity 1 50 0 1803 145 3 26 chrX 133385081 133385385 -43588755 - AluJb SINE Alu -11 301 5 2541 68 3 7 chrX 133385444 133385811 -43588329 + L1P LINE L1 4945 5303 -843 194 333 83 36 chrX 133386090 133386174 -43587966 - L2 LINE L2 -44 3228 3141 405 278 162 0 chrX 133386501 133386688 -43587452 - MIR SINE MIR -10 252 36 2211 95 0 7 chrX 133387461 133387782 -43586358 + AluSq SINE Alu 1 313 0 942 70 94 0 chrX 133387811 133387939 -43586201 + AluSg/x SINE Alu 138 277 -35 250 250 0 33 chrX 133388002 133388094 -43586046 + L1MC4 LINE L1 6615 6703 -1339 230 326 0 0 chrX 133388095 133388184 -43585956 - L1MC4 LINE L1 -1340 6702 6614 384 276 8 22 chrX 133389070 133389204 -43584936 - MIR3 SINE MIR -3 205 74 428 297 11 44 chrX 133390086 133390268 -43583872 - MIR SINE MIR -73 189 14 186 103 0 0 chrX 133390282 133390311 -43583829 + (TGAG)n Simple_repeat Simple_repeat 3 31 0 279 0 0 0 chrX 133390312 133390343 -43583797 + (TG)n Simple_repeat Simple_repeat 1 31 0 381 43 0 0 chrX 133390607 133390654 -43583486 + (CTCA)n Simple_repeat Simple_repeat 3 49 0 22 35 0 0 chrX 133393170 133393199 -43580941 + AT_rich Low_complexity Low_complexity 1 29 0 227 133 44 0 chrX 133395990 133396035 -43578105 + GA-rich Low_complexity Low_complexity 1 47 0 2307 84 0 7 chrX 133397145 133397441 -43576699 - AluSg SINE Alu -16 294 1 360 0 0 0 chrX 133397524 133397564 -43576576 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1478 167 0 0 chrX 133397567 133397794 -43576346 - AluSx SINE Alu -25 287 61 2144 131 0 10 chrX 133397810 133398123 -43576017 - AluSx SINE Alu -2 310 1 495 0 0 0 chrX 133398591 133398646 -43575494 + (TG)n Simple_repeat Simple_repeat 2 56 0 2140 103 0 76 chrX 133398877 133399068 -43575072 - AluSx SINE Alu -6 306 149 2319 112 3 0 chrX 133399068 133399372 -43574768 - AluSq SINE Alu -6 307 3 2140 103 0 76 chrX 133399372 133399510 -43574630 - AluSx SINE Alu -163 149 2 1883 132 22 4 chrX 133399629 133399901 -43574239 + AluJb SINE Alu 1 277 -35 545 14 29 0 chrX 133399901 133399970 -43574170 + (GAAA)n Simple_repeat Simple_repeat 3 73 0 2029 132 26 7 chrX 133399970 133400428 -43573712 + AluY SINE Alu 2 465 0 1502 187 7 30 chrX 133400615 133400915 -43573225 + AluJo SINE Alu 1 293 -19 460 239 51 14 chrX 133401743 133401881 -43572259 + MER5B DNA MER1_type 25 167 -11 2115 102 0 60 chrX 133402078 133402380 -43571760 + AluSq SINE Alu 2 283 -50 225 0 0 0 chrX 133402380 133402405 -43571735 + (CA)n Simple_repeat Simple_repeat 2 26 0 2115 102 0 60 chrX 133402405 133402454 -43571686 + AluSq SINE Alu 283 333 0 2331 102 0 0 chrX 133402495 133402823 -43571317 + AluSq SINE Alu 1 328 0 767 179 64 6 chrX 133404122 133404295 -43569845 - MER53 DNA DNA -4 185 3 2217 96 7 0 chrX 133404541 133404832 -43569308 - AluSx SINE Alu -19 293 1 830 132 4 176 chrX 133405492 133405742 -43568398 - MER58C DNA MER1_type 0 215 9 231 391 0 0 chrX 133409303 133409390 -43564750 + G-rich Low_complexity Low_complexity 2 88 0 331 203 61 31 chrX 133410396 133410559 -43563581 + (TTGTG)n Simple_repeat Simple_repeat 5 172 0 285 256 0 47 chrX 133411675 133411761 -43562379 + C-rich Low_complexity Low_complexity 4 85 0 258 32 0 0 chrX 133412070 133412101 -43562039 + (CCG)n Simple_repeat Simple_repeat 2 32 0 234 91 0 0 chrX 133412194 133412227 -43561913 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 420 37 0 0 chrX 133413576 133413630 -43560510 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 228 86 0 0 chrX 133413931 133413966 -43560174 + (CCCCCA)n Simple_repeat Simple_repeat 1 35 0 218 261 0 31 chrX 133414461 133414526 -43559614 + G-rich Low_complexity Low_complexity 4 66 0 246 231 29 19 chrX 133416526 133416630 -43557510 + (TCTA)n Simple_repeat Simple_repeat 2 106 0 207 0 0 0 chrX 133418382 133418405 -43555735 + (A)n Simple_repeat Simple_repeat 1 23 0 208 277 133 0 chrX 133424026 133424109 -43550031 + MIR SINE MIR 160 253 -9 593 237 14 0 chrX 133424629 133424768 -43549372 - MARNA DNA Mariner -345 241 101 1853 112 51 4 chrX 133425253 133425529 -43548611 + AluSx SINE Alu 14 302 -10 2403 92 3 0 chrX 133425551 133425857 -43548283 - AluSp SINE Alu -6 307 1 1801 160 6 19 chrX 133427186 133427499 -43546641 - AluJo SINE Alu -3 309 1 2336 67 3 0 chrX 133427748 133428066 -43546074 + AluY SINE Alu 1 319 0 2195 112 0 3 chrX 133428090 133428394 -43545746 - AluSx SINE Alu -9 303 1 2132 104 4 4 chrX 133428588 133428867 -43545273 + AluSx SINE Alu 1 279 -33 636 162 0 84 chrX 133429794 133429842 -43544298 - FLAM_A SINE Alu -172 130 80 2316 85 0 3 chrX 133429842 133430135 -43544005 - AluSx SINE Alu -20 292 1 636 162 0 84 chrX 133430135 133430228 -43543912 - FLAM_A SINE Alu -222 80 1 2637 43 0 0 chrX 133433777 133434080 -43540060 - AluY SINE Alu -8 303 1 209 306 48 83 chrX 133434397 133434597 -43539543 + L2 LINE L2 2653 2844 -470 2498 76 0 0 chrX 133434597 133434898 -43539242 - AluSq SINE Alu -12 301 1 209 306 48 83 chrX 133434898 133434949 -43539191 + L2 LINE L2 2844 2895 -419 2350 82 20 0 chrX 133434979 133435283 -43538857 - AluSp SINE Alu -3 310 1 376 316 88 18 chrX 133435300 133435471 -43538669 + MIR SINE MIR 11 193 -69 1807 157 21 3 chrX 133436716 133437003 -43537137 + AluJb SINE Alu 1 292 -20 582 198 121 19 chrX 133437019 133437176 -43536964 - MER39 LTR ERV1 -233 474 302 444 200 105 9 chrX 133437153 133437258 -43536882 - MER39 LTR ERV1 -584 123 9 * 280 226 69 29 chrX 133437269 133437371 -43536769 - MER5A DNA MER1_type -72 117 12 2063 150 0 6 chrX 133437774 133438088 -43536052 + AluJb SINE Alu 1 312 0 1609 186 39 3 chrX 133440509 133440815 -43533325 + 7SLRNA srpRNA srpRNA 1 317 -3 207 162 0 0 chrX 133440816 133440853 -43533287 + GA-rich Low_complexity Low_complexity 4 40 0 944 245 78 42 chrX 133440979 133441362 -43532778 - L1MC4a LINE L1 -1879 5929 5533 1091 211 32 100 chrX 133442172 133442523 -43531617 + MLT1G LTR MaLR 149 540 -33 2054 118 34 7 chrX 133442742 133443038 -43531102 - AluSx SINE Alu -7 305 2 1252 182 102 59 chrX 133443124 133443458 -43530682 + MER39 LTR ERV1 1 535 -172 2225 96 4 0 chrX 133443458 133443775 -43530365 + AluSp SINE Alu 3 320 0 1252 182 102 59 chrX 133443775 133443810 -43530330 + MER39 LTR ERV1 535 567 -140 192 152 0 0 chrX 133443810 133443843 -43530297 + CT-rich Low_complexity Low_complexity 2 34 0 753 244 0 6 chrX 133443851 133444023 -43530117 - FRAM SINE Alu -3 173 3 594 217 13 20 chrX 133444028 133444180 -43529960 + MER39 LTR ERV1 557 707 0 199 111 28 0 chrX 133444265 133444301 -43529839 - L2 LINE L2 -2 3311 3275 482 245 80 84 chrX 133444576 133444813 -43529327 - MIR SINE MIR -14 248 13 439 227 8 17 chrX 133445326 133445445 -43528695 + L1MDb LINE L1 775 892 -5517 180 0 0 0 chrX 133445445 133445465 -43528675 + (CAA)n Simple_repeat Simple_repeat 2 21 0 18367 133 70 77 chrX 133445470 133445613 -43528527 + L1M1 LINE L1 12 154 -7411 2448 88 0 0 chrX 133445613 133445921 -43528219 - AluY SINE Alu -3 308 1 18367 133 70 77 chrX 133445921 133447846 -43526294 + L1M1 LINE L1 154 2091 -5474 1196 58 0 45 chrX 133447846 133448001 -43526139 - AluSc SINE Alu -9 300 153 18367 133 70 77 chrX 133448001 133448033 -43526107 + L1M1 LINE L1 2091 2122 -5443 2089 130 0 0 chrX 133448033 133448344 -43525796 + AluSx SINE Alu 1 311 0 18367 133 70 77 chrX 133448344 133449186 -43524954 + L1M1 LINE L1 2122 2968 -4597 760 62 35 0 chrX 133449186 133449299 -43524841 + (TTTC)n Simple_repeat Simple_repeat 2 118 0 1919 144 29 0 chrX 133449301 133449578 -43524562 - AluSx SINE Alu -27 285 1 18367 133 70 77 chrX 133449578 133450143 -43523997 + L1M1 LINE L1 2969 3660 -3905 2232 107 0 23 chrX 133450143 133450452 -43523688 + AluSg SINE Alu 1 302 -8 18367 133 70 77 chrX 133450452 133450542 -43523598 + L1M1 LINE L1 3660 3749 -3816 10388 157 12 82 chrX 133450521 133451422 -43522718 + L1M1 LINE L1 4519 5482 -2242 * 930 76 0 25 chrX 133451422 133451540 -43522600 + AluSg/x SINE Alu 169 283 -27 222 37 0 0 chrX 133451544 133451571 -43522569 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 10388 157 12 82 chrX 133451571 133451902 -43522238 + L1M1 LINE L1 5485 5838 -1886 2343 92 7 0 chrX 133451902 133452197 -43521943 + AluSq SINE Alu 1 297 -16 10388 157 12 82 chrX 133452197 133453401 -43520739 + L1M1 LINE L1 5838 7125 -599 2339 91 0 7 chrX 133453401 133453699 -43520441 + AluSp SINE Alu 1 296 -17 180 0 0 0 chrX 133453702 133453722 -43520418 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 10388 157 12 82 chrX 133453722 133453830 -43520310 + L1M1 LINE L1 6878 6992 -732 487 320 91 9 chrX 133453937 133454156 -43519984 + MIR SINE MIR 25 261 -1 452 161 0 0 chrX 133454563 133454644 -43519496 + L1MA7 LINE L1 6210 6290 -1 245 59 0 0 chrX 133456156 133456190 -43517950 + L1MA9 LINE L1 6278 6311 -1 561 131 0 61 chrX 133457159 133457258 -43516882 - FRAM SINE Alu -19 157 65 445 255 0 0 chrX 133457286 133457388 -43516752 - MIR SINE MIR 0 262 161 236 118 196 0 chrX 133457496 133457547 -43516593 - MLT-int LTR MaLR -187 1548 1488 24 85 0 0 chrX 133458151 133458210 -43515930 + AT_rich Low_complexity Low_complexity 1 59 0 193 133 0 0 chrX 133458239 133458269 -43515871 + L2 LINE L2 3276 3305 -8 297 0 0 0 chrX 133459592 133459625 -43514515 + (CA)n Simple_repeat Simple_repeat 2 34 0 339 324 132 39 chrX 133460076 133460462 -43513678 + L2 LINE L2 1986 2407 -907 366 194 38 156 chrX 133460536 133460696 -43513444 - MIR SINE MIR -12 250 110 367 296 69 61 chrX 133460756 133461003 -43513137 - MER102b DNA MER1_type 0 341 93 427 208 98 60 chrX 133461049 133461232 -43512908 - L1MC4 LINE L1 -16 8026 7837 1065 229 6 60 chrX 133461287 133461619 -43512521 - L1ME2 LINE L1 -11 6153 5840 1319 292 47 47 chrX 133461827 133462406 -43511734 + L3 LINE CR1 429 1007 -570 659 262 103 17 chrX 133462426 133462659 -43511481 - L2 LINE L2 -916 2398 2146 2252 145 2 42 chrX 133462663 133463063 -43511077 - MLT1B LTR MaLR -6 384 1 1016 288 98 21 chrX 133463065 133463495 -43510645 - L2 LINE L2 -1166 2148 1686 235 294 109 0 chrX 133463533 133463625 -43510515 - L2 LINE L2 -1798 1516 1415 378 313 16 15 chrX 133463730 133463860 -43510280 + MIR SINE MIR 20 148 -70 474 332 127 5 chrX 133464149 133464361 -43509779 - MIR SINE MIR -13 249 8 2165 117 13 0 chrX 133464582 133464881 -43509259 - AluSq SINE Alu -10 303 1 491 319 53 21 chrX 133464937 133465125 -43509015 - MIR3 SINE MIR -8 200 7 28 0 0 0 chrX 133465319 133465347 -43508793 + AT_rich Low_complexity Low_complexity 1 28 0 243 313 0 0 chrX 133466181 133466245 -43507895 - L2 LINE L2 -2 3270 3207 201 182 0 0 chrX 133466749 133466782 -43507358 + T-rich Low_complexity Low_complexity 1 33 0 466 278 14 42 chrX 133466905 133467049 -43507091 + MIR3 SINE MIR 8 147 -61 600 234 126 0 chrX 133467076 133467243 -43506897 + MIR SINE MIR 62 249 -13 1128 291 114 27 chrX 133468832 133469358 -43504782 + L3 LINE CR1 1005 1576 -1 593 330 43 91 chrX 133469426 133469509 -43504631 - L2 LINE L2 0 3272 3187 1552 174 8 0 chrX 133469509 133469756 -43504384 + AluJo SINE Alu 42 290 -22 593 330 43 91 chrX 133469756 133470136 -43504004 - L2 LINE L2 -85 3187 2831 1381 186 68 96 chrX 133470901 133471369 -43502771 + LTR68 LTR ERV1 1 455 -285 268 148 0 82 chrX 133471648 133471709 -43502431 - L2 LINE L2 0 3313 3258 24 0 0 0 chrX 133472525 133472549 -43501591 + AT_rich Low_complexity Low_complexity 1 24 0 3633 202 56 33 chrX 133472707 133472915 -43501225 + L1MB7 LINE L1 752 954 -5692 252 59 0 0 chrX 133472915 133472949 -43501191 + (CA)n Simple_repeat Simple_repeat 1 34 0 3633 202 56 33 chrX 133472949 133474045 -43500095 + L1MB7 LINE L1 954 2096 -4550 27 0 0 0 chrX 133474049 133474076 -43500064 + AT_rich Low_complexity Low_complexity 1 27 0 812 160 49 7 chrX 133474082 133474226 -43499914 - FRAM SINE Alu -26 150 1 466 272 73 19 chrX 133474293 133474499 -43499641 + L1MB7 LINE L1 2265 2481 -4165 2742 199 36 14 chrX 133474513 133474658 -43499482 + L1MB7 LINE L1 4679 4819 -1863 2000 158 55 0 chrX 133474658 133474988 -43499152 - MER7A DNA MER2_type 0 346 1 2742 199 36 14 chrX 133474988 133475679 -43498461 + L1MB7 LINE L1 4819 5493 -1189 2229 50 0 0 chrX 133475679 133475938 -43498202 - AluY SINE Alu -18 293 35 2742 199 36 14 chrX 133475938 133477017 -43497123 + L1MB7 LINE L1 5493 6665 -17 539 248 9 0 chrX 133477363 133477472 -43496668 + MER81 DNA DNA 5 114 0 892 278 30 9 chrX 133477862 133478092 -43496048 - MIR SINE MIR -27 235 1 964 301 87 21 chrX 133478802 133479354 -43494786 - L2 LINE L2 -6 3307 2722 342 295 55 23 chrX 133480523 133480740 -43493400 - LTR40c LTR ERVL -73 392 169 2148 114 0 25 chrX 133481000 133481316 -43492824 + AluSc SINE Alu 1 308 -1 1213 172 13 40 chrX 133481558 133481785 -43492355 - MER58A DNA MER1_type 0 224 4 3005 229 42 48 chrX 133481818 133481909 -43492231 + L1ME1 LINE L1 3680 3770 -2376 7200 48 1 3 chrX 133481909 133482823 -43491317 + L1PA7 LINE L1 5235 6146 -8 3005 229 42 48 chrX 133482823 133483824 -43490316 + L1ME1 LINE L1 3770 4765 -1381 1156 136 0 0 chrX 133483830 133484006 -43490134 + AluSq SINE Alu 131 306 -7 2005 226 38 17 chrX 133484011 133484798 -43489342 + L1ME1 LINE L1 4790 5592 -572 22155 145 32 24 chrX 133484810 133485935 -43488205 - L1MA2 LINE L1 -1 7722 6608 2300 105 51 14 chrX 133485935 133486286 -43487854 - THE1B LTR MaLR 0 364 1 22155 145 32 24 chrX 133486286 133491572 -43482568 - L1MA2 LINE L1 -1115 6608 1238 2207 115 0 3 chrX 133491572 133491884 -43482256 + AluY SINE Alu 1 311 0 22155 145 32 24 chrX 133491884 133493122 -43481018 - L1MA2 LINE L1 -6485 1238 11 1727 202 19 51 chrX 133493122 133493264 -43480876 + L1ME1 LINE L1 5579 5724 -442 864 188 129 5 chrX 133493264 133493450 -43480690 + MER63A DNA MER1_type 1 209 -1 1727 202 19 51 chrX 133493450 133493784 -43480356 + L1ME1 LINE L1 5724 5993 -173 424 222 9 20 chrX 133493749 133493866 -43480274 + L1ME1 LINE L1 6058 6331 -3 * 186 262 99 81 chrX 133493974 133494146 -43479994 - L3b LINE CR1 -97 1486 1312 2100 139 7 0 chrX 133494321 133494622 -43479518 + AluSx SINE Alu 2 304 -8 1035 188 0 16 chrX 133494631 133494823 -43479317 - MIR SINE MIR -21 241 53 1788 178 3 0 chrX 133494900 133495186 -43478954 + AluJo SINE Alu 5 291 -21 360 257 73 46 chrX 133495265 133495483 -43478657 + L1ME4a LINE L1 5896 6119 -2 2240 68 0 4 chrX 133496324 133496627 -43477513 + AluSc SINE Alu 1 302 0 387 0 0 0 chrX 133496858 133496901 -43477239 + (TG)n Simple_repeat Simple_repeat 1 43 0 333 360 26 0 chrX 133497604 133497718 -43476422 + MIR SINE MIR 87 203 -59 385 271 65 0 chrX 133497916 133498023 -43476117 - MER5A DNA MER1_type -48 141 28 8096 235 25 32 chrX 133498091 133499990 -43474150 - L1M4 LINE L1 -1042 5104 3195 2318 86 10 0 chrX 133499990 133500280 -43473860 + AluY SINE Alu 1 293 -18 8096 235 25 32 chrX 133500280 133500596 -43473544 - L1M4 LINE L1 -2951 3195 2904 1743 167 7 3 chrX 133500596 133500895 -43473245 - AluJb SINE Alu -2 310 11 8096 235 25 32 chrX 133500895 133501206 -43472934 - L1M4 LINE L1 -3242 2904 2593 1073 235 96 22 chrX 133501209 133501609 -43472531 - L1ME LINE L1 -377 5785 5358 299 281 56 0 chrX 133501684 133501773 -43472367 + MIR SINE MIR 14 107 -155 4278 216 88 5 chrX 133501889 133503093 -43471047 - L1MD2 LINE L1 -2 6357 5055 381 145 81 0 chrX 133503117 133503179 -43470961 - L1M4c LINE L1 -5895 489 423 * 459 186 0 0 chrX 133503165 133503266 -43470874 + L1MA3 LINE L1 6041 6146 -159 333 278 171 32 chrX 133503275 133503462 -43470678 + MIR SINE MIR 39 251 -11 200 139 0 28 chrX 133503696 133503732 -43470408 - L3b LINE CR1 -9 1574 1540 853 230 0 6 chrX 133504625 133504799 -43469341 - MIR SINE MIR -5 257 85 652 291 69 22 chrX 133504852 133505154 -43468986 + MLT1I LTR MaLR 31 312 -97 293 344 86 24 chrX 133505233 133505524 -43468616 - MLT1I LTR MaLR -34 375 67 223 158 0 26 chrX 133505646 133505684 -43468456 - MIR SINE MIR -188 74 38 397 129 13 18 chrX 133505684 133505701 -43468439 - L1M4 LINE L1 -497 5681 5665 1933 201 23 7 chrX 133505701 133506138 -43468002 - L1MB7 LINE L1 -11 6173 5730 397 129 13 18 chrX 133506138 133506196 -43467944 - L1M4 LINE L1 -513 5665 5612 * 1297 213 35 65 chrX 133506194 133506596 -43467544 - L1M4 LINE L1 -2759 3387 3002 2281 98 0 3 chrX 133506596 133506891 -43467249 + AluSq SINE Alu 1 294 -19 1297 213 35 65 chrX 133506891 133507000 -43467140 - L1M4 LINE L1 -3144 3002 2891 268 146 0 0 chrX 133507000 133507041 -43467099 - MSTA LTR MaLR 0 428 388 1737 144 0 0 chrX 133507041 133507291 -43466849 + AluSq SINE Alu 1 250 -63 254 154 154 19 chrX 133507297 133507349 -43466791 + Tigger3(Golem) DNA MER2_type 2970 3028 -1 479 200 97 48 chrX 133507363 133507528 -43466612 + MER34 LTR ERV1 370 542 0 2425 262 32 14 chrX 133507584 133508309 -43465831 - L2 LINE L2 -1254 2060 1321 193 237 0 0 chrX 133508304 133508342 -43465798 + MIR3 SINE MIR 161 198 -10 * 319 246 9 36 chrX 133508433 133508543 -43465597 + L2 LINE L2 496 602 -2712 21 0 0 0 chrX 133508848 133508869 -43465271 + AT_rich Low_complexity Low_complexity 1 21 0 1540 148 58 61 chrX 133509102 133509527 -43464613 + AluJb SINE Alu 1 424 0 263 284 128 18 chrX 133509781 133509890 -43464250 + L2 LINE L2 3191 3311 -2 35 24 0 0 chrX 133510038 133510080 -43464060 + AT_rich Low_complexity Low_complexity 1 42 0 22 80 0 0 chrX 133510525 133510575 -43463565 + AT_rich Low_complexity Low_complexity 1 50 0 396 287 87 26 chrX 133510952 133511147 -43462993 - MIR SINE MIR -41 221 15 237 316 86 0 chrX 133511332 133511449 -43462691 + L3 LINE CR1 1216 1342 -235 618 258 144 9 chrX 133511455 133511684 -43462456 - MIR SINE MIR 0 262 3 995 289 28 42 chrX 133512025 133512496 -43461644 + L2 LINE L2 2415 2878 -436 931 249 30 17 chrX 133512497 133512734 -43461406 + MIR SINE MIR 2 241 -21 347 361 13 0 chrX 133512743 133512898 -43461242 + L2 LINE L2 2908 3064 -249 484 280 140 0 chrX 133513508 133513694 -43460446 - MIR SINE MIR -4 258 47 689 229 207 0 chrX 133513827 133514006 -43460134 + MER20 DNA MER1_type 4 219 0 659 201 89 11 chrX 133515066 133515245 -43458895 + L1MB5 LINE L1 5976 6168 -6 231 125 0 0 chrX 133516172 133516212 -43457928 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 306 0 0 chrX 133516508 133516580 -43457560 + G-rich Low_complexity Low_complexity 1 72 0 384 22 0 0 chrX 133517401 133517446 -43456694 + (CA)n Simple_repeat Simple_repeat 2 46 0 216 86 0 0 chrX 133518201 133518236 -43455904 + (T)n Simple_repeat Simple_repeat 1 35 0 218 266 193 0 chrX 133519179 133519288 -43454852 - MIR SINE MIR -14 248 119 210 91 0 0 chrX 133521956 133521989 -43452151 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 285 259 0 12 chrX 133522673 133522758 -43451382 + CT-rich Low_complexity Low_complexity 2 85 0 576 183 17 28 chrX 133523101 133523281 -43450859 + GA-rich Low_complexity Low_complexity 2 179 0 748 156 0 38 chrX 133523295 133523481 -43450659 + GA-rich Low_complexity Low_complexity 1 179 0 642 126 17 40 chrX 133523505 133523679 -43450461 + GA-rich Low_complexity Low_complexity 2 171 0 25915 121 28 75 chrX 133524584 133529031 -43445109 + L1P LINE L1 12 4215 -1931 2352 119 0 0 chrX 133529031 133529343 -43444797 + AluSx SINE Alu 1 312 0 25915 121 28 75 chrX 133529343 133529730 -43444410 + L1P LINE L1 4215 4619 -1527 241 211 18 0 chrX 133529813 133529870 -43444270 + FLAM SINE Alu 51 108 -25 270 56 0 0 chrX 133529897 133529933 -43444207 + (GGA)n Simple_repeat Simple_repeat 1 36 0 7151 51 19 0 chrX 133529953 133531471 -43442669 + L1PA7 LINE L1 4611 6153 -1 425 203 109 47 chrX 133531611 133531739 -43442401 + MIR3 SINE MIR 45 180 -28 1720 132 11 4 chrX 133532212 133532477 -43441663 - AluSx SINE Alu -45 267 1 1327 177 107 75 chrX 133533858 133534242 -43439898 + MSTD LTR MaLR 1 396 0 1763 156 19 0 chrX 133534355 133534662 -43439478 + MER33 DNA MER1_type 1 313 -11 184 278 67 33 chrX 133534755 133534845 -43439295 + L2 LINE L2 3154 3246 -26 333 303 0 0 chrX 133534846 133534935 -43439205 + MER34 LTR ERV1 8 96 -446 * 986 224 115 38 chrX 133534921 133535234 -43438906 + LTR48 LTR ERV1 157 493 -294 371 248 91 11 chrX 133535252 133535418 -43438722 + LTR48 LTR ERV1 370 538 -4 406 272 56 56 chrX 133535548 133535728 -43438412 + MIR3 SINE MIR 14 193 -15 260 194 0 179 chrX 133536311 133536445 -43437695 - MER102a DNA MER1_type 0 330 221 210 37 0 0 chrX 133536463 133536490 -43437650 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 230 238 0 0 chrX 133536514 133536556 -43437584 - MER102a DNA MER1_type -263 67 26 217 352 38 0 chrX 133537159 133537264 -43436876 + L2 LINE L2 3139 3247 -25 1141 157 11 6 chrX 133537331 133537504 -43436636 - MER7A DNA MER2_type 0 336 163 1098 262 139 31 chrX 133537504 133538158 -43435982 + LTR51 LTR ERV1 1 665 -6 998 139 91 0 chrX 133538193 133538358 -43435782 - MER7A DNA MER2_type -168 178 1 434 226 65 0 chrX 133538502 133538595 -43435545 - L2 LINE L2 -20 3252 3154 232 402 37 0 chrX 133538702 133538866 -43435274 + L2 LINE L2 3102 3271 -1 2419 67 7 7 chrX 133539002 133539299 -43434841 + AluSc SINE Alu 1 297 -12 210 118 0 0 chrX 133540873 133540907 -43433233 + (TG)n Simple_repeat Simple_repeat 2 35 0 1088 260 56 92 chrX 133541200 133541646 -43432494 - LTR16A LTR ERVL 0 450 21 1659 216 28 36 chrX 133542129 133542522 -43431618 - MLT1B LTR MaLR 0 390 1 2150 190 47 7 chrX 133542522 133542928 -43431212 - MLT1B-int LTR MaLR 0 1735 1314 306 266 13 0 chrX 133543111 133543190 -43430950 - MLT1B-int LTR MaLR -968 767 688 566 258 46 5 chrX 133543263 133543454 -43430686 - MLT1B-int LTR MaLR -488 883 594 666 213 77 0 chrX 133543462 133543617 -43430523 - MLT1B-int LTR MaLR -1204 167 1 1209 162 157 103 chrX 133543617 133543987 -43430153 - MLT1B LTR MaLR 0 390 1 358 200 83 17 chrX 133544028 133544148 -43429992 + L2 LINE L2 2371 2498 -816 2872 204 39 4 chrX 133544150 133544688 -43429452 - MLT1F1 LTR MaLR 0 567 11 538 284 106 10 chrX 133544990 133545198 -43428942 + MLT1H LTR MaLR 30 257 -292 510 17 0 0 chrX 133545267 133545326 -43428814 + (CA)n Simple_repeat Simple_repeat 1 59 0 321 163 171 49 chrX 133545339 133545462 -43428678 + MLT1H LTR MaLR 405 533 -16 205 357 24 0 chrX 133545488 133545572 -43428568 + L2 LINE L2 2965 3050 -222 27 0 0 0 chrX 133545919 133545946 -43428194 + AT_rich Low_complexity Low_complexity 1 27 0 217 241 52 0 chrX 133546575 133546633 -43427507 + MIR SINE MIR 201 261 -1 204 360 0 0 chrX 133547295 133547370 -43426770 + L2 LINE L2 3148 3222 -50 261 183 0 0 chrX 133547403 133547463 -43426677 + (TTCA)n Simple_repeat Simple_repeat 3 62 0 1037 200 28 14 chrX 133547480 133547695 -43426445 - MER20 DNA MER1_type 0 219 2 2697 183 98 88 chrX 133547875 133548403 -43425737 - Charlie2 DNA MER1_type 0 2862 2341 1781 188 0 3 chrX 133548403 133548695 -43425445 - AluJb SINE Alu -21 291 1 2697 183 98 88 chrX 133548695 133549013 -43425127 - Charlie2 DNA MER1_type -521 2341 2028 1926 125 0 7 chrX 133549013 133549285 -43424855 + AluSg SINE Alu 38 307 -3 3645 164 20 5 chrX 133549289 133549941 -43424199 - L1MB3 LINE L1 -2 6181 5520 2697 183 98 88 chrX 133549941 133550082 -43424058 - Charlie2 DNA MER1_type -836 2026 1859 914 241 4 53 chrX 133550093 133550338 -43423802 - Charlie2 DNA MER1_type -2464 318 86 718 121 0 0 chrX 133550342 133550441 -43423699 - AluS SINE Alu -210 102 4 1199 134 0 21 chrX 133550442 133550636 -43423504 + AluSg/x SINE Alu 122 311 -1 1477 125 99 0 chrX 133550839 133551071 -43423069 + AluSx SINE Alu 38 292 -20 202 321 13 85 chrX 133551214 133551438 -43422702 - L2 LINE L2 -234 3038 2831 1901 144 0 23 chrX 133551521 133551827 -43422313 - AluJo SINE Alu -13 299 1 1685 179 3 27 chrX 133552268 133552569 -43421571 + AluJo SINE Alu 1 294 -18 1719 166 10 24 chrX 133552740 133553029 -43421111 + AluJo SINE Alu 1 285 -27 288 0 0 0 chrX 133553030 133553062 -43421078 + (GA)n Simple_repeat Simple_repeat 1 32 0 1958 239 41 63 chrX 133553236 133553842 -43420298 + MLT1E LTR MaLR 1 593 0 1055 203 58 17 chrX 133555582 133555823 -43418317 - MIR SINE MIR -11 251 1 225 329 37 12 chrX 133556054 133556136 -43418004 + L2 LINE L2 2970 3053 -219 823 236 39 35 chrX 133556251 133556283 -43417857 - MIR SINE MIR 0 262 232 1883 127 41 96 chrX 133556283 133556373 -43417767 - MER47A DNA MER2_type -1957 366 273 2262 117 3 0 chrX 133556373 133556682 -43417458 + AluSx SINE Alu 1 310 -2 1883 127 41 96 chrX 133556682 133556888 -43417252 - MER47A DNA MER2_type -2050 273 93 1983 94 79 7 chrX 133556888 133557165 -43416975 + AluSx SINE Alu 1 297 -15 1883 127 41 96 chrX 133557165 133557254 -43416886 - MER47A DNA MER2_type -2230 93 1 823 236 39 35 chrX 133557254 133557480 -43416660 - MIR SINE MIR -30 232 3 361 279 10 10 chrX 133557753 133557857 -43416283 - L2 LINE L2 0 3313 3210 410 105 0 53 chrX 133558008 133558084 -43416056 - L1PA7 LINE L1 -1 6153 6082 269 200 176 0 chrX 133558140 133558225 -43415915 + MIR SINE MIR 50 149 -59 220 156 0 22 chrX 133558257 133558302 -43415838 + MIR SINE MIR 110 153 -109 3802 165 45 10 chrX 133558541 133559366 -43414774 - L1MC4 LINE L1 -8 8034 7039 396 79 3 63 chrX 133559608 133559693 -43414447 - MLT2B2 LTR ERVL 0 515 440 1553 232 26 24 chrX 133559694 133559765 -43414375 - ERVL-B3 LTR ERVL -5132 632 563 7529 50 0 0 chrX 133559765 133560162 -43413978 - L1PA6 LINE L1 -3 6151 5755 2392 78 0 0 chrX 133560162 133560455 -43413685 - AluY SINE Alu -18 293 1 7529 50 0 0 chrX 133560455 133561067 -43413073 - L1PA6 LINE L1 -398 5756 5162 1553 232 26 24 chrX 133561067 133561336 -43412804 - ERVL-B3 LTR ERVL -5201 563 291 356 129 14 14 chrX 133561334 133561404 -43412736 - ERVL-B3 LTR ERVL -5584 70 1 * 2935 174 24 88 chrX 133561404 133561996 -43412144 - MLT2B3 LTR ERVL 0 554 1 624 294 35 10 chrX 133561996 133562193 -43411947 - MIR SINE MIR -60 202 1 203 91 0 0 chrX 133562790 133562823 -43411317 - L2 LINE L2 0 3313 3281 207 344 88 107 chrX 133563027 133563289 -43410851 - L2 LINE L2 0 3272 3016 342 0 0 0 chrX 133563715 133563753 -43410387 + (CA)n Simple_repeat Simple_repeat 2 39 0 506 263 90 0 chrX 133564240 133564396 -43409744 + MIR SINE MIR 37 206 -56 357 266 55 18 chrX 133564801 133564910 -43409230 - MIR SINE MIR -74 188 76 1002 258 174 52 chrX 133564950 133565028 -43409112 - L2 LINE L2 0 3313 3246 192 77 0 0 chrX 133565028 133565054 -43409086 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1002 258 174 52 chrX 133565054 133565844 -43408296 - L2 LINE L2 -67 3246 2303 245 263 0 18 chrX 133565818 133565875 -43408265 - L2 LINE L2 -49 3223 3168 * 330 308 0 0 chrX 133566100 133566178 -43407962 + L2 LINE L2 3195 3272 0 402 329 23 103 chrX 133566551 133566940 -43407200 - L2 LINE L2 -49 3223 2866 1800 143 11 11 chrX 133567321 133567601 -43406539 + AluJo SINE Alu 3 282 -30 239 91 0 23 chrX 133567604 133567648 -43406492 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 666 299 39 0 chrX 133568172 133568379 -43405761 + MIR SINE MIR 4 218 -44 257 308 93 0 chrX 133568768 133568875 -43405265 + L1ME4a LINE L1 5992 6108 -13 207 0 0 0 chrX 133571781 133571804 -43402336 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1279 179 113 58 chrX 133572200 133572474 -43401666 - AluJo SINE Alu -13 289 1 548 263 34 59 chrX 133572681 133573004 -43401136 - L1MC5 LINE L1 -36 7925 7611 287 254 0 0 chrX 133573868 133573931 -43400209 + L2 LINE L2 3251 3313 0 776 251 59 53 chrX 133574454 133574793 -43399347 + L1ME4a LINE L1 5586 5926 -195 227 238 0 0 chrX 133574911 133574953 -43399187 + polypurine Low_complexity Low_complexity 3 44 0 291 254 0 0 chrX 133576525 133576588 -43397552 - L2 LINE L2 0 3272 3210 327 25 0 0 chrX 133576719 133576759 -43397381 + (TG)n Simple_repeat Simple_repeat 2 41 0 309 214 10 87 chrX 133576776 133576879 -43397261 + MIR SINE MIR 122 216 -46 1878 130 49 0 chrX 133577156 133577440 -43396700 + AluSx SINE Alu 14 311 -1 4119 170 32 13 chrX 133577673 133578454 -43395686 + L1MA7 LINE L1 4534 5329 -817 459 198 0 0 chrX 133578455 133578536 -43395604 + AluSg/x SINE Alu 208 288 -24 3022 129 6 19 chrX 133578537 133578583 -43395557 + L1MA7 LINE L1 5321 5366 -925 2269 123 10 0 chrX 133578583 133578891 -43395249 + AluSx SINE Alu 1 311 -1 3022 129 6 19 chrX 133578891 133579323 -43394817 + L1MA7 LINE L1 5366 5793 -498 295 141 31 0 chrX 133579323 133579387 -43394753 + (TA)n Simple_repeat Simple_repeat 1 66 0 277 109 0 55 chrX 133579387 133579442 -43394698 + L1MA7 LINE L1 5782 5833 -479 * 7209 48 7 0 chrX 133579440 133580485 -43393655 + L1PA5 LINE L1 5119 6170 0 2507 124 74 54 chrX 133580488 133580949 -43393191 + L1MA7 LINE L1 5822 6291 0 1207 265 125 54 chrX 133581286 133581496 -43392644 + Tigger8 DNA MER2_type 27 221 -445 1569 168 90 0 chrX 133581496 133581764 -43392376 + AluJo SINE Alu 1 292 -20 1207 265 125 54 chrX 133581764 133582146 -43391994 + Tigger8 DNA MER2_type 221 661 -5 194 273 42 91 chrX 133582410 133582524 -43391616 + L2 LINE L2 3162 3269 -44 2114 175 39 21 chrX 133582524 133582907 -43391233 + MLT1B LTR MaLR 1 390 0 194 273 42 91 chrX 133582907 133582935 -43391205 + L2 LINE L2 3269 3297 -16 2310 137 3 0 chrX 133582993 133583329 -43390811 - THE1B LTR MaLR 0 364 28 996 214 19 28 chrX 133583329 133583544 -43390596 - MIR SINE MIR -17 245 33 1991 109 11 0 chrX 133583551 133583817 -43390323 - AluSq SINE Alu -44 269 1 551 269 11 65 chrX 133584294 133584333 -43389807 - MIR SINE MIR -81 181 141 2904 13 0 0 chrX 133584333 133584648 -43389492 - AluYb8 SINE Alu -3 315 1 551 269 11 65 chrX 133584648 133584794 -43389346 - MIR SINE MIR -121 141 6 313 233 36 150 chrX 133585198 133585391 -43388749 - L3 LINE CR1 -6 1571 1401 601 285 58 62 chrX 133586022 133586282 -43387858 - MIR SINE MIR -1 261 3 229 299 78 24 chrX 133586367 133586534 -43387606 + L2 LINE L2 2729 2904 -410 2259 99 13 22 chrX 133587198 133587510 -43386630 - AluSq SINE Alu -4 309 1 1315 267 12 3 chrX 133587536 133587862 -43386278 + L1ME3 LINE L1 5834 6162 0 185 284 114 0 chrX 133588164 133588252 -43385888 + L2 LINE L2 2960 3057 -215 553 189 28 0 chrX 133588323 133588429 -43385711 + MER5A DNA MER1_type 4 112 -77 260 252 129 41 chrX 133588499 133588646 -43385494 - MER5B DNA MER1_type -8 170 11 974 269 34 65 chrX 133589471 133589520 -43384620 + L1ME4a LINE L1 5440 5489 -632 1641 223 86 24 chrX 133589520 133589893 -43384247 - MSTD LTR MaLR 0 396 1 974 269 34 65 chrX 133589893 133590148 -43383992 + L1ME4a LINE L1 5489 5726 -395 2348 115 0 0 chrX 133590148 133590460 -43383680 + AluSx SINE Alu 1 312 0 974 269 34 65 chrX 133590460 133590614 -43383526 + L1ME4a LINE L1 5726 5883 -238 988 128 54 0 chrX 133590742 133590891 -43383249 + L1PA13 LINE L1 5866 6022 -141 386 245 29 10 chrX 133590992 133591094 -43383046 - MIR SINE MIR -94 168 65 206 288 122 81 chrX 133592297 133592410 -43381730 - MIR SINE MIR -62 146 43 359 153 40 16 chrX 133592622 133592746 -43381394 + CT-rich Low_complexity Low_complexity 1 127 0 422 296 112 22 chrX 133592916 133593095 -43381045 + MIR SINE MIR 49 243 -19 342 115 0 0 chrX 133593371 133593423 -43380717 + (CA)n Simple_repeat Simple_repeat 2 53 0 181 302 48 0 chrX 133593491 133593554 -43380586 + MIR SINE MIR 154 219 -43 2209 129 0 0 chrX 133593765 133594068 -43380072 - AluSx SINE Alu -9 303 1 2219 107 0 32 chrX 133594207 133594516 -43379624 - AluSx SINE Alu -13 299 1 347 321 108 35 chrX 133594778 133595065 -43379075 + L2 LINE L2 3006 3313 0 2098 206 65 14 chrX 133596420 133596915 -43377225 + L1ME3A LINE L1 5649 6168 -2 450 280 32 8 chrX 133597090 133597215 -43376925 - L2 LINE L2 -1 3312 3185 21 71 0 0 chrX 133598033 133598075 -43376065 + AT_rich Low_complexity Low_complexity 1 42 0 239 306 82 10 chrX 133598198 133598296 -43375844 - MIR SINE MIR -64 144 40 251 229 0 96 chrX 133598808 133598891 -43375249 + Charlie7 DNA MER1_type 35 109 -2503 512 274 34 0 chrX 133598910 133599027 -43375113 + L2 LINE L2 3151 3271 -1 347 241 38 83 chrX 133599221 133599354 -43374786 - MIR3 SINE MIR -32 176 50 986 159 50 11 chrX 133599421 133599603 -43374537 + MER5A DNA MER1_type 1 189 0 928 267 16 12 chrX 133599887 133600145 -43373995 + MIR SINE MIR 3 261 -1 195 100 0 0 chrX 133600163 133600193 -43373947 + (CAT)n Simple_repeat Simple_repeat 1 30 0 330 315 54 0 chrX 133602748 133602840 -43371300 - L2 LINE L2 -16 3256 3160 526 278 62 19 chrX 133603010 133603210 -43370930 + MIR SINE MIR 61 262 0 1065 269 83 66 chrX 133603919 133604482 -43369658 - L2 LINE L2 0 3313 2761 2189 122 0 0 chrX 133604482 133604778 -43369362 - AluSx SINE Alu -16 296 1 1065 269 83 66 chrX 133604778 133604810 -43369330 - L2 LINE L2 -552 2761 2731 2668 157 30 32 chrX 133604810 133605209 -43368931 - L1MB3 LINE L1 -2 6181 5782 232 26 0 51 chrX 133605209 133605248 -43368892 + (TA)n Simple_repeat Simple_repeat 1 37 0 2668 157 30 32 chrX 133605248 133605346 -43368794 - L1MB3 LINE L1 -401 5782 5685 1065 269 83 66 chrX 133605346 133605435 -43368705 - L2 LINE L2 -582 2731 2622 1487 186 44 101 chrX 133605598 133605985 -43368155 + MLT1A1 LTR MaLR 1 365 0 264 271 0 0 chrX 133606482 133606541 -43367599 + L2 LINE L2 3209 3267 -5 642 277 182 5 chrX 133607317 133607537 -43366603 - MIR SINE MIR -3 259 1 520 269 8 15 chrX 133607985 133608119 -43366021 + L2 LINE L2 3173 3305 -8 833 224 267 21 chrX 133608228 133608554 -43365586 + MLT1I LTR MaLR 1 406 -3 360 277 62 0 chrX 133610152 133610282 -43363858 + MER103 DNA DNA 7 144 -22 528 184 18 0 chrX 133610701 133610815 -43363325 - L1MD3 LINE L1 -10 7985 7870 697 275 5 76 chrX 133610821 133611078 -43363062 - MIR SINE MIR -11 251 9 215 163 20 0 chrX 133611502 133611551 -43362589 + A-rich Low_complexity Low_complexity 1 50 0 771 291 52 31 chrX 133613956 133614282 -43359858 + MLT1I LTR MaLR 75 407 -2 1608 168 35 11 chrX 133615446 133615731 -43358409 - AluJb SINE Alu -20 292 1 707 222 13 93 chrX 133615732 133615756 -43358384 - MER20 DNA MER1_type -11 208 184 6448 82 19 3 chrX 133615756 133617500 -43356640 + L1PA11 LINE L1 4415 6174 0 707 222 13 93 chrX 133617500 133617700 -43356440 - MER20 DNA MER1_type -35 184 2 621 264 193 5 chrX 133617778 133617990 -43356150 - MIR SINE MIR 0 262 11 288 326 10 10 chrX 133618007 133618105 -43356035 - MIR SINE MIR -118 144 47 361 235 47 35 chrX 133618921 133619006 -43355134 - L2 LINE L2 0 3272 3187 366 346 73 13 chrX 133619580 133619814 -43354326 - L2 LINE L2 -218 3054 2807 484 252 8 8 chrX 133620089 133620216 -43353924 - MIR SINE MIR -27 235 109 351 343 41 7 chrX 133620755 133620901 -43353239 - MIR SINE MIR -84 178 28 1188 173 20 44 chrX 133621032 133621280 -43352860 - MSTB LTR MaLR 0 426 185 36 0 0 0 chrX 133621288 133621324 -43352816 + AT_rich Low_complexity Low_complexity 1 36 0 6185 114 16 0 chrX 133621324 133622299 -43351841 - L1MA2 LINE L1 -10 6294 5304 * 14094 181 37 15 chrX 133622294 133623993 -43350147 + L1PB1 LINE L1 843 2503 -4364 2574 43 3 0 chrX 133623993 133624294 -43349846 - AluY SINE Alu -9 302 1 14094 181 37 15 chrX 133624294 133626858 -43347282 + L1PB1 LINE L1 2503 5381 -1486 2351 109 0 0 chrX 133626858 133627171 -43346969 + AluSq SINE Alu 1 313 0 14094 181 37 15 chrX 133627171 133628692 -43345448 + L1PB1 LINE L1 5381 6867 0 1115 204 23 0 chrX 133628719 133628940 -43345200 - L1 LINE L1 -1920 5645 5420 1177 100 0 0 chrX 133628942 133629122 -43345018 - AluSp SINE Alu 0 312 133 1774 158 10 65 chrX 133629122 133629508 -43344632 - L1 LINE L1 -2141 5424 5060 1691 190 18 9 chrX 133629522 133629859 -43344281 - L1 LINE L1 -7202 363 24 1110 145 21 5 chrX 133629874 133630067 -43344073 - MSTB LTR MaLR -230 196 1 955 204 0 16 chrX 133630699 133630890 -43343250 - MER5A DNA MER1_type -1 188 1 265 299 15 0 chrX 133631377 133631444 -43342696 + L2 LINE L2 3228 3295 -18 2144 122 10 6 chrX 133633412 133633723 -43340417 - AluSx SINE Alu 0 312 1 339 215 0 15 chrX 133633828 133633893 -43340247 - L2 LINE L2 0 3272 3209 282 312 110 32 chrX 133633921 133634139 -43340001 - L2 LINE L2 -181 3091 2857 288 283 11 11 chrX 133634568 133634660 -43339480 + MLT1K LTR MaLR 3 94 -494 354 80 0 0 chrX 133634910 133634960 -43339180 + (TG)n Simple_repeat Simple_repeat 2 51 0 3244 108 0 21 chrX 133635472 133635675 -43338465 + MER1A DNA MER1_type 57 263 -2439 2426 77 0 0 chrX 133635675 133635973 -43338167 + AluSc SINE Alu 1 298 -11 3244 108 0 21 chrX 133635973 133636252 -43337888 + MER1A DNA MER1_type 263 529 0 815 157 0 0 chrX 133636511 133636658 -43337482 - L1MA4 LINE L1 -6 6294 6148 352 241 214 9 chrX 133636720 133636832 -43337308 + MIR SINE MIR 3 137 -125 180 325 62 0 chrX 133637272 133637352 -43336788 + MIR SINE MIR 174 258 -4 2070 141 0 0 chrX 133637545 133637843 -43336297 + AluSx SINE Alu 2 299 -13 327 261 43 100 chrX 133637856 133638086 -43336054 + L1ME4a LINE L1 5889 6105 -16 22 88 0 0 chrX 133638348 133638405 -43335735 + AT_rich Low_complexity Low_complexity 1 57 0 1075 90 19 0 chrX 133638434 133638590 -43335550 + L1MA2 LINE L1 6146 6304 0 227 248 116 16 chrX 133638599 133638728 -43335412 + L1M4b LINE L1 93 234 -6625 1990 298 16 14 chrX 133638903 133639544 -43334596 + L1M4b LINE L1 469 1110 -5749 338 179 0 64 chrX 133639563 133639641 -43334499 + L1M4b LINE L1 1191 1263 -5596 727 267 35 35 chrX 133639646 133639994 -43334146 + L1M4b LINE L1 1979 2326 -4633 322 276 69 33 chrX 133640338 133640613 -43333527 + L1M4b LINE L1 2649 2933 -4026 350 292 45 22 chrX 133640613 133640791 -43333349 + L1MC5 LINE L1 7509 7690 -271 2160 128 0 36 chrX 133640880 133641240 -43332900 - L1PA16 LINE L1 -3 6163 5817 272 246 43 0 chrX 133641243 133641312 -43332828 - L1P LINE L1 -3849 2297 2226 * 293 87 0 0 chrX 133641301 133641352 -43332788 + L1MB7 LINE L1 6123 6174 0 2335 101 0 0 chrX 133641363 133641671 -43332469 + AluSg SINE Alu 1 308 -2 1398 216 24 35 chrX 133641688 133642058 -43332082 - L2 LINE L2 -710 2604 2239 2050 161 76 55 chrX 133642102 133642574 -43331566 - MLT1D LTR MaLR 0 505 24 1540 255 84 42 chrX 133642600 133643078 -43331062 - L2 LINE L2 -995 2319 1822 443 144 11 11 chrX 133643078 133643168 -43330972 + L1MEc LINE L1 36 125 -6271 4099 137 63 52 chrX 133643170 133644126 -43330014 + L1MB2 LINE L1 5200 6167 -4 1117 255 55 47 chrX 133644145 133644235 -43329905 + L1MEc LINE L1 112 200 -6196 2468 87 7 0 chrX 133644235 133644545 -43329595 + AluSx SINE Alu 1 312 0 1117 255 55 47 chrX 133644545 133644858 -43329282 + L1MEc LINE L1 200 518 -5878 * 2557 225 47 30 chrX 133644855 133645763 -43328377 - L1ME1 LINE L1 -54 6112 5190 1415 62 6 0 chrX 133645763 133645940 -43328200 - AluY SINE Alu -4 307 130 1664 173 0 13 chrX 133646303 133646615 -43327525 - L1PA16 LINE L1 0 6166 5859 1146 257 100 60 chrX 133648215 133648713 -43325427 + LTR33 LTR ERVL 1 518 -3 612 249 38 111 chrX 133650189 133650450 -43323690 + MIR SINE MIR 3 244 -18 46 19 0 0 chrX 133651594 133651647 -43322493 + AT_rich Low_complexity Low_complexity 1 53 0 2286 97 0 0 chrX 133651658 133651946 -43322194 + AluSq SINE Alu 1 288 -25 627 164 10 0 chrX 133652019 133652123 -43322017 + MLT1F1 LTR MaLR 1 105 -462 423 0 0 0 chrX 133652123 133652170 -43321970 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1717 114 0 0 chrX 133652200 133652427 -43321713 - AluSx SINE Alu -85 227 1 650 183 8 0 chrX 133652427 133652553 -43321587 + MLT1F1 LTR MaLR 94 220 -347 891 169 23 99 chrX 133652569 133652740 -43321400 + L1MA4 LINE L1 3460 3597 -3968 2095 115 3 43 chrX 133652740 133653062 -43321078 - AluSg SINE Alu -1 309 1 891 169 23 99 chrX 133653062 133653264 -43320876 + L1MA4 LINE L1 3597 3813 -3752 2123 130 7 3 chrX 133653271 133653571 -43320569 + AluSq SINE Alu 11 311 -2 5713 165 16 9 chrX 133653575 133653938 -43320202 + L1MA4 LINE L1 5699 6058 -1661 2359 67 0 35 chrX 133653938 133654252 -43319888 + AluSp SINE Alu 1 303 -10 5713 165 16 9 chrX 133654252 133655884 -43318256 + L1MA4 LINE L1 6058 7708 -11 24 91 0 0 chrX 133655884 133655950 -43318190 + AT_rich Low_complexity Low_complexity 1 66 0 435 315 7 14 chrX 133656092 133656384 -43317756 + L1PA15 LINE L1 4705 4994 -2571 519 284 30 0 chrX 133656397 133656566 -43317574 + HsTC2 DNA Tc2 3 176 -1722 512 281 62 45 chrX 133656667 133656955 -43317185 + L1PA15 LINE L1 5886 6178 -1387 471 284 79 62 chrX 133657025 133657280 -43316860 + L1PA15 LINE L1 6283 6532 -1051 5604 119 12 18 chrX 133657280 133658452 -43315688 + L1PA15 LINE L1 6411 7582 -2 471 284 79 62 chrX 133658452 133658758 -43315382 + L1PA15 LINE L1 6532 6850 -733 488 292 98 17 chrX 133658894 133659230 -43314910 + L1MC4a LINE L1 5669 6016 -105 22 35 0 0 chrX 133659356 133659385 -43314755 + AT_rich Low_complexity Low_complexity 1 29 0 236 316 42 21 chrX 133659395 133659490 -43314650 + HAL1 LINE L1 2406 2502 -5 25 0 0 0 chrX 133660291 133660316 -43313824 + AT_rich Low_complexity Low_complexity 1 25 0 210 71 0 0 chrX 133660429 133660457 -43313683 + (CA)n Simple_repeat Simple_repeat 2 29 0 1092 178 112 0 chrX 133660525 133660722 -43313418 + MER20 DNA MER1_type 1 219 0 1642 79 0 14 chrX 133661018 133661232 -43312908 - L1PA7 LINE L1 0 6154 5944 5113 64 6 11 chrX 133661232 133662365 -43311775 + MER11A LTR ERVK 2 1266 0 31625 110 21 62 chrX 133662369 133665226 -43308914 - L1PA7 LINE L1 -208 5946 3482 2085 148 0 0 chrX 133665226 133665536 -43308604 - AluSg SINE Alu 0 310 1 31625 110 21 62 chrX 133665536 133668871 -43305269 - L1PA7 LINE L1 -2672 3482 13 430 302 30 24 chrX 133668950 133669119 -43305021 + MIR3 SINE MIR 35 204 -4 216 0 0 0 chrX 133669163 133669187 -43304953 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 584 282 60 13 chrX 133669908 133670057 -43304083 + MER91A DNA MER1_type 24 179 -17 1493 188 46 16 chrX 133670097 133670400 -43303740 + AluJo SINE Alu 1 312 0 21 0 0 0 chrX 133670533 133670554 -43303586 + AT_rich Low_complexity Low_complexity 1 21 0 254 264 0 0 chrX 133671791 133671844 -43302296 - MIR3 SINE MIR -5 203 151 417 278 31 31 chrX 133671986 133672148 -43301992 + MIR SINE MIR 101 262 0 202 330 23 11 chrX 133672698 133672786 -43301354 + L2 LINE L2 3191 3279 -34 360 200 55 152 chrX 133673164 133673309 -43300831 + MIR SINE MIR 78 208 -54 7233 29 14 1 chrX 133673996 133674848 -43299292 - L1PA3 LINE L1 0 6155 5293 1829 198 30 22 chrX 133675758 133676122 -43298018 - MLT1E1 LTR MaLR 0 654 288 1442 204 0 53 chrX 133676127 133676446 -43297694 + AluJo SINE Alu 1 302 -10 1645 181 18 0 chrX 133676537 133676819 -43297321 - AluJo SINE Alu -25 287 1 1543 189 4 8 chrX 133676824 133677089 -43297051 - MLT1E1 LTR MaLR -390 264 1 1453 216 3 7 chrX 133677446 133677742 -43296398 - AluJo SINE Alu -17 295 1 2099 141 3 0 chrX 133677785 133678097 -43296043 + AluSq SINE Alu 1 313 0 2244 91 0 3 chrX 133678206 133678502 -43295638 + AluSq SINE Alu 2 296 -17 316 348 52 0 chrX 133678914 133679069 -43295071 + MIR SINE MIR 78 240 -22 297 302 0 10 chrX 133680714 133680810 -43293330 - MIR3 SINE MIR -48 160 66 225 333 0 0 chrX 133680838 133680895 -43293245 - MIR SINE MIR -1 261 205 2104 108 13 35 chrX 133680934 133681250 -43292890 + AluSq SINE Alu 1 309 -4 941 281 69 42 chrX 133681475 133682072 -43292068 - L1P2 LINE L1 -312 5842 5222 223 315 48 34 chrX 133682309 133682327 -43291813 - L2 LINE L2 -214 3058 3042 1647 130 0 0 chrX 133682327 133682558 -43291582 - AluSg/x SINE Alu 0 310 80 2287 81 14 3 chrX 133682558 133682852 -43291288 - AluSc SINE Alu -11 298 1 223 315 48 34 chrX 133682852 133682978 -43291162 - L2 LINE L2 -229 3043 2911 1558 177 57 3 chrX 133683168 133683285 -43290855 + AluJo SINE Alu 1 110 -202 351 0 0 0 chrX 133683285 133683324 -43290816 + (CA)n Simple_repeat Simple_repeat 2 40 0 1558 177 57 3 chrX 133683324 133683488 -43290652 + AluJo SINE Alu 110 297 -15 2490 67 3 3 chrX 133683562 133683861 -43290279 - AluSp SINE Alu -14 299 1 568 172 181 116 chrX 133683918 133684150 -43289990 - MIR SINE MIR 0 262 16 204 309 181 20 chrX 133684179 133684328 -43289812 - L3 LINE CR1 -66 1511 1339 3024 192 32 38 chrX 133684380 133685010 -43289130 + MLT1E2 LTR MaLR 1 626 0 232 287 70 43 chrX 133685026 133685141 -43288999 - L3 LINE CR1 -374 1203 1086 272 323 8 16 chrX 133685145 133685272 -43288868 + L1MC4 LINE L1 7351 7476 -566 * 838 258 95 69 chrX 133685245 133685639 -43288501 + L1MC5 LINE L1 7276 7693 -268 2382 96 3 3 chrX 133685639 133685951 -43288189 + AluSp SINE Alu 2 313 0 838 258 95 69 chrX 133685951 133686165 -43287975 + L1MC5 LINE L1 7693 7900 -61 859 167 0 101 chrX 133686165 133686363 -43287777 - AluJb SINE Alu -2 310 133 2258 87 3 0 chrX 133686388 133686700 -43287440 + AluSq SINE Alu 1 313 0 877 329 73 38 chrX 133686715 133687071 -43287069 - L3 LINE CR1 -477 1100 718 2001 118 11 0 chrX 133687071 133687393 -43286747 + AluSx SINE Alu 1 325 0 877 329 73 38 chrX 133687393 133687542 -43286598 - L3 LINE CR1 -859 718 576 181 232 167 36 chrX 133687562 133687700 -43286440 - MIR SINE MIR -4 258 103 2302 110 0 0 chrX 133687724 133688025 -43286115 + AluSq SINE Alu 1 301 -12 357 318 45 0 chrX 133688282 133688414 -43285726 + MIR SINE MIR 120 257 -5 384 285 31 17 chrX 133688767 133688926 -43285214 - MIR SINE MIR -70 192 28 2142 96 35 0 chrX 133689684 133689966 -43284174 - AluSc SINE Alu -17 292 1 22 0 0 0 chrX 133690124 133690146 -43283994 + AT_rich Low_complexity Low_complexity 1 22 0 402 245 75 13 chrX 133690416 133690575 -43283565 - L1MC5 LINE L1 -533 7428 7260 446 141 0 28 chrX 133690637 133690708 -43283432 + MER1B DNA MER1_type 77 145 -152 * 536 178 0 0 chrX 133690706 133690796 -43283344 - MER1B DNA MER1_type -247 90 1 893 283 55 12 chrX 133690800 133691121 -43283019 + L1MC/D LINE L1 5487 5818 -347 12229 89 3 0 chrX 133691151 133692779 -43281361 + L1PA5 LINE L1 2 1634 -4512 18543 42 1 0 chrX 133692779 133695675 -43278465 + L1PA5 LINE L1 3253 6149 -5 314 326 22 0 chrX 133696275 133696364 -43277776 + L2 LINE L2 3143 3233 -39 2094 109 30 13 chrX 133696397 133696699 -43277441 + AluSx SINE Alu 1 307 -5 221 269 0 0 chrX 133696785 133696837 -43277303 - L2 LINE L2 -3 3310 3259 183 273 148 74 chrX 133697244 133697353 -43276787 + MIR SINE MIR 74 202 -60 2332 97 3 0 chrX 133697353 133697663 -43276477 + AluSp SINE Alu 1 311 -2 183 273 148 74 chrX 133697663 133697729 -43276411 + MIR SINE MIR 202 262 0 190 277 45 103 chrX 133697841 133697996 -43276144 - L2 LINE L2 -164 3108 2963 189 254 0 55 chrX 133698537 133698592 -43275548 + L2 LINE L2 3181 3232 -81 328 167 0 26 chrX 133699290 133699386 -43274754 + MER5A DNA MER1_type 44 189 0 181 333 21 11 chrX 133699387 133699480 -43274660 + MIR SINE MIR 103 196 -66 294 149 0 0 chrX 133699500 133699547 -43274593 - MER63 DNA MER1_type -37 1023 977 412 234 0 21 chrX 133699548 133699642 -43274498 - MER63 DNA MER1_type -85 751 34 638 269 19 0 chrX 133702073 133702233 -43271907 + MIR3 SINE MIR 42 204 -4 555 269 0 38 chrX 133702845 133703005 -43271135 + MIR3 SINE MIR 53 206 -2 2291 103 6 6 chrX 133703158 133703470 -43270670 + AluSx SINE Alu 1 312 0 1157 235 119 55 chrX 133703672 133704149 -43269991 + L2 LINE L2 2805 3312 -1 318 376 23 0 chrX 133704544 133704677 -43269463 - MIR SINE MIR -81 181 46 2173 105 6 29 chrX 133704810 133705124 -43269016 + AluSp SINE Alu 1 307 -6 321 288 59 39 chrX 133705133 133705286 -43268854 + MIR SINE MIR 96 251 -11 234 0 0 0 chrX 133706155 133706181 -43267959 + (A)n Simple_repeat Simple_repeat 1 26 0 276 284 111 31 chrX 133706329 133706491 -43267649 + MIR3 SINE MIR 15 189 -19 2861 133 64 4 chrX 133706594 133707060 -43267080 + L1MB3 LINE L1 5688 6181 -2 2220 116 0 3 chrX 133707125 133707426 -43266714 + AluSx SINE Alu 1 300 -12 674 158 20 0 chrX 133707426 133707527 -43266613 + AluSg/x SINE Alu 190 292 -20 528 30 0 0 chrX 133707546 133707612 -43266528 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 399 280 34 17 chrX 133708871 133709001 -43265139 + MIR SINE MIR 22 152 -62 387 248 30 30 chrX 133709229 133709330 -43264810 - MIR SINE MIR -140 122 22 263 207 52 112 chrX 133710758 133710874 -43263266 - MIR3 SINE MIR -15 193 85 246 128 0 0 chrX 133711027 133711066 -43263074 + (CCCCCA)n Simple_repeat Simple_repeat 4 42 0 333 0 0 0 chrX 133712043 133712080 -43262060 + (CA)n Simple_repeat Simple_repeat 2 38 0 424 240 33 16 chrX 133714720 133714841 -43259299 + MIR3 SINE MIR 85 207 -1 656 258 92 0 chrX 133714950 133715113 -43259027 - MIR SINE MIR -25 237 60 1666 132 114 7 chrX 133716069 133716342 -43257798 + AluSx SINE Alu 1 302 -10 2168 112 0 3 chrX 133716435 133716730 -43257410 + AluSg SINE Alu 1 294 -16 2358 152 60 19 chrX 133716731 133717197 -43256943 + MER31A LTR ERV1 1 485 0 254 250 125 56 chrX 133717642 133717793 -43256347 + L1ME LINE L1 5408 5572 -549 2465 31 0 0 chrX 133717793 133718122 -43256018 - AluY SINE Alu 0 311 1 226 314 0 0 chrX 133718515 133718585 -43255555 - Charlie4 DNA MER1_type 0 1961 1892 380 326 151 19 chrX 133718775 133719100 -43255040 + L2 LINE L2 1218 1585 -1729 203 184 0 0 chrX 133719106 133719144 -43254996 + A-rich Low_complexity Low_complexity 3 40 0 423 265 26 34 chrX 133719250 133719367 -43254773 - L2 LINE L2 -15 3298 3183 6154 147 12 20 chrX 133719722 133719957 -43254183 + L1MA4A LINE L1 4624 4859 -1444 1806 129 58 18 chrX 133719957 133720142 -43253998 - AluSx SINE Alu 0 334 131 2279 67 0 7 chrX 133720142 133720475 -43253665 - AluY SINE Alu 0 311 1 1806 129 58 18 chrX 133720475 133720612 -43253528 - AluSx SINE Alu -203 131 1 6154 147 12 20 chrX 133720612 133721066 -43253074 + L1MA4A LINE L1 4859 5315 -988 1400 44 0 6 chrX 133721066 133721247 -43252893 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6154 147 12 20 chrX 133721247 133722192 -43251948 + L1MA4A LINE L1 5315 6249 -54 2323 86 0 0 chrX 133722192 133722507 -43251633 + AluSx SINE Alu 1 315 0 6154 147 12 20 chrX 133722507 133722557 -43251583 + L1MA4A LINE L1 6249 6298 -5 466 172 20 201 chrX 133722714 133722846 -43251294 + MIR SINE MIR 91 245 -17 1655 152 29 23 chrX 133722846 133722944 -43251196 + L1MC1 LINE L1 6013 6109 -224 2435 151 31 24 chrX 133722944 133723175 -43250965 - MSTB LTR MaLR 0 426 189 2110 122 0 20 chrX 133723175 133723478 -43250662 - AluSx SINE Alu -15 297 1 2435 151 31 24 chrX 133723478 133723669 -43250471 - MSTB LTR MaLR -237 189 1 1655 152 29 23 chrX 133723669 133723880 -43250260 + L1MC1 LINE L1 6109 6324 -9 2426 92 0 3 chrX 133723882 133724188 -43249952 + AluSq SINE Alu 1 305 -8 466 172 20 201 chrX 133724188 133724256 -43249884 + MIR SINE MIR 246 257 -5 370 236 31 142 chrX 133724428 133724653 -43249487 + L2 LINE L2 3073 3272 0 297 241 169 0 chrX 133725586 133725669 -43248471 + MIR SINE MIR 95 191 -71 2053 134 3 3 chrX 133725719 133726024 -43248116 - AluSx SINE Alu -7 305 1 3306 144 52 45 chrX 133726164 133726207 -43247933 + L1MB4 LINE L1 5434 5475 -705 195 42 0 0 chrX 133726207 133726231 -43247909 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3306 144 52 45 chrX 133726231 133726418 -43247722 + L1MB4 LINE L1 5475 5659 -521 2099 152 0 9 chrX 133726418 133726733 -43247407 + AluJb SINE Alu 1 312 0 3306 144 52 45 chrX 133726733 133727217 -43246923 + L1MB4 LINE L1 5659 6154 -26 330 115 0 0 chrX 133727611 133727663 -43246477 + (TG)n Simple_repeat Simple_repeat 2 53 0 2308 85 3 0 chrX 133728851 133729155 -43244985 + AluSp SINE Alu 1 305 0 373 268 6 55 chrX 133729254 133729418 -43244722 - L1MC5 LINE L1 -74 7887 7732 2118 108 11 0 chrX 133729460 133729770 -43244370 + AluSx SINE Alu 1 313 0 401 240 72 51 chrX 133730719 133730767 -43243373 - MIR3 SINE MIR -86 122 77 4297 80 6 52 chrX 133730767 133731427 -43242713 + L1PA11 LINE L1 5545 6174 0 401 240 72 51 chrX 133731427 133731537 -43242603 - MIR3 SINE MIR -131 77 7 4254 102 19 6 chrX 133731644 133732284 -43241856 - L1MA3 LINE L1 -1 6304 5657 282 360 0 8 chrX 133732317 133732442 -43241698 + Charlie8 DNA MER1_type 158 281 -2136 1703 205 3 3 chrX 133733256 133733576 -43240564 - AluJb SINE Alu 0 312 1 2236 138 0 0 chrX 133733819 133734130 -43240010 + AluJb SINE Alu 1 311 -1 1693 180 38 12 chrX 133734221 133734566 -43239574 - MLT1A1 LTR MaLR 0 365 12 1258 219 201 38 chrX 133735024 133735319 -43238821 + MLT2B1 LTR ERVL 1 246 -274 1610 195 20 30 chrX 133735319 133735621 -43238519 + AluJo SINE Alu 1 299 -13 1258 219 201 38 chrX 133735621 133735772 -43238368 + MLT2B1 LTR ERVL 246 520 0 455 353 68 57 chrX 133735830 133736272 -43237868 - L2 LINE L2 0 3272 2826 501 289 67 0 chrX 133736516 133736665 -43237475 - MIR3 SINE MIR -16 192 34 429 311 8 0 chrX 133737064 133737183 -43236957 - L2 LINE L2 0 3313 3194 302 362 14 14 chrX 133737374 133737512 -43236628 - L2 LINE L2 -219 3053 2916 1402 208 82 0 chrX 133737742 133737856 -43236284 - MER2 DNA MER2_type 0 345 242 2114 120 0 3 chrX 133737856 133738148 -43235992 + AluSg SINE Alu 1 291 -19 1402 208 82 0 chrX 133738148 133738351 -43235789 - MER2 DNA MER2_type -103 242 2 21 0 0 0 chrX 133738351 133738372 -43235768 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chrX 133738410 133738442 -43235698 + AT_rich Low_complexity Low_complexity 1 32 0 201 339 79 8 chrX 133739737 133739864 -43234276 - L2 LINE L2 -6 3307 3172 1840 166 24 35 chrX 133739883 133740256 -43233884 + MER93b LTR ERV1 5 373 0 10575 199 38 62 chrX 133740519 133741962 -43232178 + L1MA4 LINE L1 810 2285 -4717 2350 108 0 0 chrX 133741962 133742268 -43231872 - AluSq SINE Alu -7 306 1 10575 199 38 62 chrX 133742268 133742315 -43231825 + L1MA4 LINE L1 2285 2332 -4670 1887 148 21 7 chrX 133742315 133742598 -43231542 - AluSx SINE Alu -25 287 1 10575 199 38 62 chrX 133742598 133742641 -43231499 + L1MA4 LINE L1 2332 2374 -4628 2282 110 0 0 chrX 133742641 133742933 -43231207 + AluSx SINE Alu 1 292 -20 10575 199 38 62 chrX 133742933 133744368 -43229772 + L1MA4 LINE L1 2374 3841 -3161 1320 123 0 5 chrX 133744368 133744555 -43229585 + AluSx SINE Alu 1 186 -126 10575 199 38 62 chrX 133744555 133744775 -43229365 + L1MA4 LINE L1 3841 4065 -2937 1788 129 91 3 chrX 133744775 133745062 -43229078 - AluSx SINE Alu 0 312 1 10575 199 38 62 chrX 133745062 133747639 -43226501 + L1MA4 LINE L1 4065 6549 -453 1279 174 87 0 chrX 133747639 133747753 -43226387 - AluJo SINE Alu -47 265 162 2192 106 0 29 chrX 133747753 133748065 -43226075 - AluSx SINE Alu -9 303 1 1279 174 87 0 chrX 133748065 133748168 -43225972 - AluJo SINE Alu -150 162 29 2310 144 33 5 chrX 133748170 133748593 -43225547 + L1MA4 LINE L1 6565 6999 -3 3408 152 82 10 chrX 133748786 133749485 -43224655 - L1MB4 LINE L1 0 6180 5432 1852 206 21 12 chrX 133749485 133749859 -43224281 - L1MB4 LINE L1 -1350 4796 4427 201 108 0 0 chrX 133749859 133749896 -43224244 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2254 64 0 4 chrX 133749898 133750179 -43223961 - AluY SINE Alu -31 280 1 1852 206 21 12 chrX 133750179 133750286 -43223854 - L1MB4 LINE L1 -1719 4427 4308 2176 118 0 16 chrX 133750447 133750762 -43223378 + AluSx SINE Alu 1 310 -2 319 258 100 17 chrX 133750822 133750942 -43223198 + MER94 DNA DNA 5 134 0 430 161 18 18 chrX 133751650 133751762 -43222378 + L1M4 LINE L1 4943 5054 -1092 1995 107 4 0 chrX 133751774 133752044 -43222096 + AluSx SINE Alu 1 271 -41 234 110 64 46 chrX 133752044 133752153 -43221987 + (TA)n Simple_repeat Simple_repeat 1 111 0 22 35 0 0 chrX 133752280 133752309 -43221831 + AT_rich Low_complexity Low_complexity 1 29 0 279 198 44 77 chrX 133752816 133752860 -43221280 - MLT1H LTR MaLR -8 541 500 1807 184 58 54 chrX 133752860 133753323 -43220817 - MLT1C LTR MaLR -2 465 1 279 198 44 77 chrX 133753323 133753369 -43220771 - MLT1H LTR MaLR -49 500 454 326 275 90 81 chrX 133753460 133753682 -43220458 - MLT1H LTR MaLR -215 334 111 352 300 109 0 chrX 133753966 133754076 -43220064 - L2 LINE L2 0 3272 3151 2023 145 0 0 chrX 133754203 133754510 -43219630 + AluSx SINE Alu 1 307 0 3635 168 15 15 chrX 133754707 133755434 -43218706 - L1MB8 LINE L1 0 6178 5452 417 245 10 10 chrX 133755513 133755611 -43218529 + MER5A DNA MER1_type 9 106 -83 913 212 62 4 chrX 133755677 133755903 -43218237 + L1MB5 LINE L1 5936 6174 0 1855 150 11 3 chrX 133755907 133756193 -43217947 + AluJo SINE Alu 1 288 -24 286 120 67 0 chrX 133756193 133756268 -43217872 + (TA)n Simple_repeat Simple_repeat 1 80 0 320 242 8 33 chrX 133757089 133757209 -43216931 + L1M3 LINE L1 5701 5817 -351 2251 93 3 23 chrX 133757220 133757522 -43216618 + AluSq SINE Alu 1 296 -17 414 162 0 0 chrX 133757522 133757596 -43216544 + (TA)n Simple_repeat Simple_repeat 1 74 0 312 304 38 13 chrX 133757599 133757727 -43216413 + L1ME2 LINE L1 5822 5950 -214 620 199 124 60 chrX 133757737 133757938 -43216202 + MER58C DNA MER1_type 1 214 -1 2093 92 7 3 chrX 133758384 133758711 -43215429 + AluSq SINE Alu 1 328 0 191 103 26 0 chrX 133759063 133759102 -43215038 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 196 322 92 0 chrX 133759480 133759567 -43214573 - L3b LINE CR1 -121 1462 1368 339 121 0 0 chrX 133759589 133759647 -43214493 + (T)n Simple_repeat Simple_repeat 1 58 0 482 259 32 43 chrX 133759899 133760086 -43214054 + MIR SINE MIR 24 207 -55 318 106 0 0 chrX 133760382 133760394 -43213746 + (CA)n Simple_repeat Simple_repeat 1 59 0 318 106 0 0 chrX 133760394 133760441 -43213699 + (CA)n Simple_repeat Simple_repeat 2 48 0 2290 97 3 10 chrX 133760444 133760742 -43213398 + AluSx SINE Alu 1 296 -16 279 0 0 0 chrX 133760759 133760790 -43213350 + (CA)n Simple_repeat Simple_repeat 2 32 0 475 291 132 19 chrX 133762101 133762314 -43211826 - MIR SINE MIR 0 262 26 867 307 14 7 chrX 133762547 133762909 -43211231 + L2 LINE L2 2724 3088 -225 894 282 76 34 chrX 133762910 133763318 -43210822 + L2 LINE L2 2819 3243 -70 308 200 0 0 chrX 133763316 133763376 -43210764 - L2 LINE L2 -251 3062 3003 * 608 265 30 18 chrX 133763564 133763730 -43210410 - MIR SINE MIR -77 185 18 384 217 22 0 chrX 133763857 133763949 -43210191 - MER94 DNA DNA 0 134 41 2368 89 0 0 chrX 133763990 133764282 -43209858 - AluSx SINE Alu -20 292 1 226 240 269 29 chrX 133764601 133764705 -43209435 - MIR SINE MIR -1 261 133 5168 137 4 87 chrX 133764713 133765249 -43208891 - L1MA7 LINE L1 0 6291 5712 216 0 0 0 chrX 133765249 133765273 -43208867 + (TG)n Simple_repeat Simple_repeat 2 25 0 5168 137 4 87 chrX 133765273 133765635 -43208505 - L1MA7 LINE L1 -579 5712 5510 2300 117 0 0 chrX 133765635 133765942 -43208198 - AluSx SINE Alu -5 307 1 5168 137 4 87 chrX 133765942 133766212 -43207928 - L1MA7 LINE L1 -781 5510 5219 591 282 0 14 chrX 133766212 133766354 -43207786 - MIR SINE MIR -108 154 15 2245 106 3 0 chrX 133766415 133766707 -43207433 + AluSx SINE Alu 1 293 -19 308 241 71 27 chrX 133767046 133767158 -43206982 - L2 LINE L2 -4 3268 3152 625 291 38 29 chrX 133767344 133767554 -43206586 + MIR SINE MIR 37 248 -14 261 265 91 30 chrX 133767580 133767712 -43206428 + L2 LINE L2 3173 3312 -1 372 230 47 16 chrX 133768038 133768165 -43205975 + MIR SINE MIR 55 146 -62 253 323 105 57 chrX 133769898 133770022 -43204118 - L2 LINE L2 -18 3254 3125 334 323 40 101 chrX 133770056 133770304 -43203836 - L2 LINE L2 -63 3209 2977 383 260 76 108 chrX 133770562 133770785 -43203355 + MIR SINE MIR 47 262 0 237 158 0 0 chrX 133771186 133771224 -43202916 + MIR SINE MIR 2 39 -223 311 318 24 71 chrX 133771333 133771441 -43202699 + MLT1I LTR MaLR 72 167 -242 2142 152 17 8 chrX 133771441 133771803 -43202337 + MLT1A1 LTR MaLR 1 365 0 311 318 24 71 chrX 133771803 133771905 -43202235 + MLT1I LTR MaLR 167 272 -137 1508 217 15 12 chrX 133772011 133772347 -43201793 + MER58B DNA MER1_type 2 338 -3 530 289 57 0 chrX 133772409 133772568 -43201572 + MIR SINE MIR 95 262 0 189 0 0 0 chrX 133773017 133773038 -43201102 + (CA)n Simple_repeat Simple_repeat 2 22 0 407 149 0 27 chrX 133774060 133774134 -43200006 + 7SK RNA RNA 1 72 -121 261 0 0 0 chrX 133774134 133774163 -43199977 + (TG)n Simple_repeat Simple_repeat 2 30 0 311 322 0 0 chrX 133774190 133774280 -43199860 + L1MC4 LINE L1 6614 6703 -1339 1804 125 29 0 chrX 133774297 133774576 -43199564 + MER7A DNA MER2_type 62 346 0 227 188 0 0 chrX 133774618 133774666 -43199474 + (TGAA)n Simple_repeat Simple_repeat 2 49 0 186 43 0 0 chrX 133775092 133775115 -43199025 + (TC)n Simple_repeat Simple_repeat 2 24 0 2510 58 0 3 chrX 133775249 133775558 -43198582 - AluSc SINE Alu -1 308 1 2154 122 0 0 chrX 133776477 133776763 -43197377 + AluSx SINE Alu 1 286 -26 21 0 0 0 chrX 133776770 133776791 -43197349 + AT_rich Low_complexity Low_complexity 1 21 0 866 319 92 29 chrX 133776941 133777420 -43196720 - L2 LINE L2 -357 2957 2449 22 0 0 0 chrX 133777839 133777861 -43196279 + AT_rich Low_complexity Low_complexity 1 22 0 544 283 46 20 chrX 133778000 133778152 -43195988 + MIR3 SINE MIR 53 208 0 192 325 100 0 chrX 133779116 133779196 -43194944 - MIR SINE MIR -50 212 125 1057 192 122 0 chrX 133781294 133781637 -43192503 + L1ME1 LINE L1 5744 6161 -5 2831 66 25 8 chrX 133782119 133782515 -43191625 + MLT2A1 LTR ERVL 1 403 -41 193 75 50 0 chrX 133782522 133782562 -43191578 + (TA)n Simple_repeat Simple_repeat 2 43 0 696 98 0 0 chrX 133782644 133782746 -43191394 + (TA)n Simple_repeat Simple_repeat 2 103 0 263 125 0 0 chrX 133782746 133782786 -43191354 + MLT2A1 LTR ERVL 414 453 0 564 252 43 91 chrX 133782891 133782971 -43191169 - MIR SINE MIR -7 255 173 2169 103 23 0 chrX 133782971 133783272 -43190868 + AluSx SINE Alu 3 310 -2 564 252 43 91 chrX 133783272 133783421 -43190719 - MIR SINE MIR -89 173 37 24 32 0 0 chrX 133785974 133786005 -43188135 + AT_rich Low_complexity Low_complexity 1 31 0 1887 169 0 10 chrX 133786108 133786404 -43187736 + AluJb SINE Alu 1 293 -19 257 275 22 44 chrX 133787093 133787184 -43186956 + L2 LINE L2 3225 3313 0 999 221 89 45 chrX 133787227 133787607 -43186533 - MER39 LTR ERV1 0 707 311 2048 139 0 3 chrX 133787819 133788114 -43186026 + AluJb SINE Alu 1 294 -18 225 0 0 0 chrX 133788412 133788437 -43185703 + (CA)n Simple_repeat Simple_repeat 1 25 0 534 230 221 29 chrX 133789194 133789398 -43184742 + MIR SINE MIR 12 254 -8 223 102 0 102 chrX 133789710 133789769 -43184371 + (TTTTC)n Simple_repeat Simple_repeat 3 55 0 195 42 0 0 chrX 133790074 133790098 -43184042 + (CA)n Simple_repeat Simple_repeat 1 24 0 405 225 19 16 chrX 133790476 133790607 -43183533 + MER63 DNA MER1_type 704 1059 -1 290 222 0 16 chrX 133790612 133790675 -43183465 + MIR SINE MIR 79 140 -68 263 208 13 26 chrX 133790675 133790752 -43183388 + (CAT)n Simple_repeat Simple_repeat 3 78 0 526 265 41 145 chrX 133791066 133791383 -43182757 - L2 LINE L2 0 3272 2989 380 342 47 16 chrX 133791376 133791566 -43182574 - L2 LINE L2 -982 2332 2137 * 614 308 79 13 chrX 133791707 133791934 -43182206 + MIR SINE MIR 16 257 -5 468 0 0 0 chrX 133793367 133793419 -43180721 + (TA)n Simple_repeat Simple_repeat 2 53 0 1651 174 33 0 chrX 133793419 133793694 -43180446 - AluJb SINE Alu -28 284 1 2475 81 7 0 chrX 133794033 133794341 -43179799 + AluSp SINE Alu 1 310 -3 1967 137 12 40 chrX 133794459 133794780 -43179360 + AluSx SINE Alu 1 312 0 827 193 20 0 chrX 133794973 133795123 -43179017 + FAM SINE Alu 13 165 -20 1136 210 8 84 chrX 133796004 133796183 -43177957 + L1MC3 LINE L1 6432 6570 -1215 2106 107 50 7 chrX 133796183 133796481 -43177659 + AluSx SINE Alu 1 311 -1 1136 210 8 84 chrX 133796481 133796668 -43177472 + L1MC3 LINE L1 6570 6770 -1015 569 113 0 0 chrX 133796668 133796748 -43177392 - AluS SINE Alu -233 80 1 264 194 0 0 chrX 133796751 133796818 -43177322 - L1MC3 LINE L1 -1178 6607 6541 242 183 0 17 chrX 133796824 133796859 -43177281 + L1MC3 LINE L1 6837 6872 -913 2070 125 0 40 chrX 133796859 133797180 -43176960 + AluSq SINE Alu 1 308 -5 242 183 0 17 chrX 133797180 133797204 -43176936 + L1MC3 LINE L1 6872 6895 -890 1973 162 35 7 chrX 133797227 133797653 -43176487 + Charlie1 DNA MER1_type 2190 2627 -134 38 51 0 0 chrX 133797665 133797724 -43176416 + AT_rich Low_complexity Low_complexity 1 59 0 629 192 13 7 chrX 133797725 133797876 -43176264 + Charlie1 DNA MER1_type 2610 2761 0 23 68 0 0 chrX 133798828 133798872 -43175268 + AT_rich Low_complexity Low_complexity 1 44 0 1415 174 17 27 chrX 133798909 133799104 -43175036 - L1MC3 LINE L1 -21 7764 7572 2324 85 0 53 chrX 133799104 133799423 -43174717 - AluSx SINE Alu -10 302 1 1415 174 17 27 chrX 133799423 133799525 -43174615 - L1MC3 LINE L1 -213 7572 7470 522 195 9 0 chrX 133799526 133799639 -43174501 - Charlie1 DNA MER1_type -626 2135 2022 3390 242 26 40 chrX 133799709 133800450 -43173690 - L1MDa LINE L1 -1849 4691 3972 1796 173 13 31 chrX 133800450 133800768 -43173372 + AluJb SINE Alu 1 312 0 3390 242 26 40 chrX 133800768 133801195 -43172945 - L1MDa LINE L1 -2568 3972 3540 3268 255 46 33 chrX 133801194 133801487 -43172653 - L1MDa LINE L1 -3420 3120 2832 * 1823 185 3 16 chrX 133801487 133801800 -43172340 - AluJb SINE Alu -3 309 1 3268 255 46 33 chrX 133801800 133802445 -43171695 - L1MDa LINE L1 -3708 2832 2197 2301 93 0 16 chrX 133802445 133802756 -43171384 + AluY SINE Alu 1 306 -5 3268 255 46 33 chrX 133802756 133802825 -43171315 - L1MDa LINE L1 -4343 2197 2130 1837 146 39 70 chrX 133802825 133803210 -43170930 - THE1C LTR MaLR 0 375 3 3268 255 46 33 chrX 133803210 133804046 -43170094 - L1MDa LINE L1 -4410 2130 1260 1304 149 47 11 chrX 133804069 133804380 -43169760 + L1MCa LINE L1 1762 2060 -4366 1492 187 34 71 chrX 133804380 133804533 -43169607 + MLT1A1 LTR MaLR 1 158 -207 2011 122 7 20 chrX 133804533 133804836 -43169304 + AluSx SINE Alu 1 299 -13 1492 187 34 71 chrX 133804836 133805004 -43169136 + MLT1A1 LTR MaLR 158 331 -34 1600 191 4 0 chrX 133805004 133805271 -43168869 + AluJo SINE Alu 1 268 -44 240 35 0 0 chrX 133805281 133805310 -43168830 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1492 187 34 71 chrX 133805310 133805355 -43168785 + MLT1A1 LTR MaLR 340 365 0 1304 149 47 11 chrX 133805355 133805560 -43168580 + L1MCa LINE L1 2060 2339 -4087 361 278 40 34 chrX 133805556 133805771 -43168369 - L1MDa LINE L1 -5293 1250 1012 * 26 0 0 0 chrX 133805867 133805893 -43168247 + AT_rich Low_complexity Low_complexity 1 26 0 9484 143 11 69 chrX 133805893 133806742 -43167398 - L1MA2 LINE L1 0 7723 6826 180 0 0 0 chrX 133806742 133806762 -43167378 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2316 91 0 7 chrX 133806765 133807063 -43167077 - AluSp SINE Alu -17 296 1 9484 143 11 69 chrX 133807063 133808267 -43165873 - L1MA2 LINE L1 -899 6824 5551 2323 92 7 0 chrX 133808267 133808562 -43165578 - AluSq SINE Alu -16 297 1 9484 143 11 69 chrX 133808562 133808893 -43165247 - L1MA2 LINE L1 -2172 5551 5202 222 37 0 0 chrX 133808893 133808920 -43165220 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 916 76 0 25 chrX 133808924 133809042 -43165098 - AluSg/x SINE Alu -27 285 171 9484 143 11 69 chrX 133809042 133809943 -43164197 - L1MA2 LINE L1 -2524 5199 4519 * 16740 124 56 69 chrX 133809922 133810012 -43164128 - L1MA2 LINE L1 -3816 3749 3659 2191 110 0 23 chrX 133810012 133810321 -43163819 - AluSg SINE Alu -8 302 1 16740 124 56 69 chrX 133810321 133810886 -43163254 - L1MA2 LINE L1 -3906 3659 3088 1919 144 29 0 chrX 133810886 133811165 -43162975 + AluSx SINE Alu 1 285 -27 761 62 35 0 chrX 133811165 133811278 -43162862 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 16740 124 56 69 chrX 133811278 133812120 -43162020 - L1MA2 LINE L1 -4477 3088 2237 2088 130 0 0 chrX 133812120 133812431 -43161709 - AluSx SINE Alu 0 311 1 16740 124 56 69 chrX 133812431 133812463 -43161677 - L1MA2 LINE L1 -5328 2237 2206 1196 58 0 45 chrX 133812463 133812618 -43161522 + AluSc SINE Alu 153 300 -9 16740 124 56 69 chrX 133812618 133814543 -43159597 - L1MA2 LINE L1 -5359 2206 155 2448 88 0 0 chrX 133814543 133814851 -43159289 + AluY SINE Alu 1 308 -3 16740 124 56 69 chrX 133814851 133814994 -43159146 - L1MA2 LINE L1 -7410 155 12 180 0 0 0 chrX 133814999 133815019 -43159121 + (TTG)n Simple_repeat Simple_repeat 2 21 0 439 227 8 17 chrX 133815019 133815138 -43159002 - L1MDb LINE L1 -5517 892 775 482 245 80 84 chrX 133815651 133815888 -43158252 + MIR SINE MIR 13 248 -14 199 111 28 0 chrX 133816163 133816199 -43157941 + L2 LINE L2 3275 3311 -2 594 217 13 20 chrX 133816284 133816436 -43157704 - MER39 LTR ERV1 0 707 557 753 244 0 6 chrX 133816441 133816613 -43157527 + FRAM SINE Alu 3 173 -3 192 152 0 0 chrX 133816621 133816654 -43157486 + GA-rich Low_complexity Low_complexity 2 34 0 1212 182 105 59 chrX 133816654 133816689 -43157451 - MER39 LTR ERV1 -140 567 535 2224 96 4 0 chrX 133816689 133817006 -43157134 - AluSp SINE Alu 0 320 3 1212 182 105 59 chrX 133817006 133817339 -43156801 - MER39 LTR ERV1 -172 535 1 1925 125 36 7 chrX 133817425 133817706 -43156434 + AluSx SINE Alu 2 290 -22 1091 211 32 100 chrX 133817940 133818291 -43155849 - MLT1G LTR MaLR -33 497 149 944 245 78 42 chrX 133819101 133819484 -43154656 + L1MC4a LINE L1 5533 5929 -1879 207 162 0 0 chrX 133819610 133819647 -43154493 + CT-rich Low_complexity Low_complexity 4 40 0 1609 186 39 3 chrX 133819648 133819954 -43154186 - 7SLRNA srpRNA srpRNA -3 317 1 2063 150 0 6 chrX 133822375 133822689 -43151451 - AluJb SINE Alu 0 312 1 280 226 69 29 chrX 133823092 133823194 -43150946 + MER5A DNA MER1_type 12 117 -72 444 200 105 9 chrX 133823205 133823310 -43150830 + MER39 LTR ERV1 9 123 -584 * 582 198 121 19 chrX 133823287 133823444 -43150696 + MER39 LTR ERV1 302 474 -233 1807 157 21 3 chrX 133823460 133823747 -43150393 - AluJb SINE Alu -20 292 1 376 316 88 18 chrX 133824992 133825163 -43148977 - MIR SINE MIR -69 193 11 2350 82 20 0 chrX 133825180 133825484 -43148656 + AluSp SINE Alu 1 310 -3 209 306 48 83 chrX 133825514 133825565 -43148575 - L2 LINE L2 -419 2895 2844 2498 76 0 0 chrX 133825565 133825866 -43148274 + AluSq SINE Alu 1 301 -12 209 306 48 83 chrX 133825866 133826066 -43148074 - L2 LINE L2 -470 2844 2653 2637 43 0 0 chrX 133826383 133826686 -43147454 + AluY SINE Alu 1 303 -8 636 162 0 84 chrX 133830235 133830328 -43143812 + FLAM_A SINE Alu 1 80 -222 2316 85 0 3 chrX 133830328 133830621 -43143519 + AluSx SINE Alu 1 292 -20 636 162 0 84 chrX 133830621 133830669 -43143471 + FLAM_A SINE Alu 80 130 -172 2132 104 4 4 chrX 133831596 133831875 -43142265 - AluSx SINE Alu -33 279 1 2195 112 0 3 chrX 133832069 133832373 -43141767 + AluSx SINE Alu 1 303 -9 2319 64 7 0 chrX 133832397 133832714 -43141426 - AluY SINE Alu 0 319 1 1801 160 6 19 chrX 133832963 133833276 -43140864 + AluJo SINE Alu 1 309 -3 2403 92 3 0 chrX 133834605 133834911 -43139229 + AluSp SINE Alu 1 307 -6 1853 112 51 4 chrX 133834933 133835209 -43138931 - AluSx SINE Alu -10 302 14 593 237 14 0 chrX 133835694 133835833 -43138307 + MARNA DNA Mariner 101 241 -345 208 277 133 0 chrX 133836353 133836436 -43137704 - MIR SINE MIR -9 253 160 207 0 0 0 chrX 133842057 133842080 -43132060 + (T)n Simple_repeat Simple_repeat 1 23 0 246 231 29 19 chrX 133843832 133843936 -43130204 + (TAGA)n Simple_repeat Simple_repeat 2 106 0 218 261 0 31 chrX 133845936 133846001 -43128139 + C-rich Low_complexity Low_complexity 4 66 0 209 179 0 0 chrX 133846490 133846529 -43127611 + G-rich Low_complexity Low_complexity 1 39 0 420 37 0 0 chrX 133846832 133846886 -43127254 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 234 91 0 0 chrX 133848234 133848267 -43125873 + (ATGGTG)n Simple_repeat Simple_repeat 1 33 0 258 32 0 0 chrX 133848360 133848391 -43125749 + (CGG)n Simple_repeat Simple_repeat 2 32 0 285 256 0 47 chrX 133848700 133848786 -43125354 + G-rich Low_complexity Low_complexity 4 85 0 431 297 111 54 chrX 133949147 133949571 -43024569 - L2 LINE L2 -751 2563 2116 528 316 111 4 chrX 133949577 133949802 -43024338 - MIR SINE MIR -12 250 2 243 240 216 94 chrX 133949811 133950182 -43023958 - L2 LINE L2 -1292 2022 1607 1191 272 105 7 chrX 133950394 133950850 -43023290 + LTR33 LTR ERVL 17 517 -4 192 111 0 0 chrX 133950904 133950940 -43023200 + (T)n Simple_repeat Simple_repeat 1 36 0 344 294 81 46 chrX 133950940 133951137 -43023003 - L2 LINE L2 -911 2403 2200 192 279 96 10 chrX 133951346 133951450 -43022690 - L2 LINE L2 -1954 1360 1248 735 226 11 44 chrX 133951757 133951838 -43022302 - MER96 DNA MER1_type 0 175 93 1912 164 14 0 chrX 133951838 133952130 -43022010 + AluJo SINE Alu 1 296 -16 735 226 11 44 chrX 133952130 133952229 -43021911 - MER96 DNA MER1_type -82 93 1 228 206 191 23 chrX 133952245 133952376 -43021764 - L1ME4a LINE L1 -104 6017 5865 219 219 0 0 chrX 133953222 133953263 -43020877 + (CCA)n Simple_repeat Simple_repeat 2 42 0 200 333 13 0 chrX 133953921 133953999 -43020141 - MIR SINE MIR -19 243 165 2439 219 55 5 chrX 133954063 133955179 -43018961 + L1M4 LINE L1 3951 5261 -885 782 207 47 93 chrX 133955177 133955343 -43018797 - L1M4 LINE L1 -2263 3883 3711 * 267 31 0 0 chrX 133955343 133955375 -43018765 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1562 187 0 57 chrX 133955379 133955678 -43018462 - AluJb SINE Alu -30 282 1 782 207 47 93 chrX 133955678 133955806 -43018334 - L1M4 LINE L1 -2438 3708 3598 22 0 0 0 chrX 133955811 133955833 -43018307 + AT_rich Low_complexity Low_complexity 1 22 0 5584 113 0 8 chrX 133955833 133956818 -43017322 - L1PB1 LINE L1 -8 6143 5141 2124 154 3 0 chrX 133956842 133957224 -43016916 + L1 LINE L1 3895 4277 -1869 1059 287 0 8 chrX 133957371 133957615 -43016525 - MIR SINE MIR -1 261 20 2206 92 0 7 chrX 133957727 133958110 -43016030 + AluY SINE Alu 1 381 0 275 291 23 0 chrX 133958238 133958324 -43015816 - MIR SINE MIR 0 262 175 532 286 132 9 chrX 133958535 133958748 -43015392 - MIR SINE MIR -4 258 20 1597 134 110 41 chrX 133958970 133959261 -43014879 - AluSx SINE Alu -1 311 1 339 323 8 24 chrX 133959722 133959846 -43014294 + MIR SINE MIR 14 135 -127 397 79 124 0 chrX 133960178 133960448 -43013692 + (TA)n Simple_repeat Simple_repeat 1 303 0 748 52 11 73 chrX 133960472 133960663 -43013477 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 1732 202 122 25 chrX 133960731 133961167 -43012973 - MLT2B1 LTR ERVL -40 480 3 750 274 19 5 chrX 133961251 133961459 -43012681 - MIR SINE MIR -37 225 15 624 268 56 29 chrX 133961832 133962068 -43012072 - MIR SINE MIR -16 246 6 1972 224 28 67 chrX 133962681 133963221 -43010919 + LTR33 LTR ERVL 3 521 0 2489 121 6 6 chrX 133963783 133964147 -43009993 + L1PA13 LINE L1 5789 6152 -11 2534 135 28 8 chrX 133964173 133964529 -43009611 - THE1B LTR MaLR -1 363 1 1566 210 102 44 chrX 133964597 133965049 -43009091 - MLT1D LTR MaLR -25 480 3 266 61 0 0 chrX 133965051 133965084 -43009056 - MIR SINE MIR -149 113 81 297 216 54 72 chrX 133965365 133965476 -43008664 - MIR SINE MIR -50 212 104 184 226 75 19 chrX 133965511 133965564 -43008576 - MIR SINE MIR -142 120 65 502 294 14 7 chrX 133965779 133965925 -43008215 + MIR SINE MIR 97 243 -19 2523 112 117 5 chrX 133966471 133966856 -43007284 - MSTA LTR MaLR 0 428 1 430 298 177 15 chrX 133967181 133967379 -43006761 - MIR SINE MIR -16 246 17 663 240 67 34 chrX 133967569 133967748 -43006392 + MER91A DNA MER1_type 1 185 -11 938 334 75 26 chrX 133967869 133968225 -43005915 - L2 LINE L2 0 3313 2976 453 310 9 0 chrX 133968225 133968338 -43005802 + MER81 DNA DNA 1 114 0 938 334 75 26 chrX 133968338 133968754 -43005386 - L2 LINE L2 -337 2976 2506 2522 206 38 41 chrX 133968759 133969340 -43004800 + L1M4 LINE L1 424 1002 -5540 762 268 63 16 chrX 133969345 133969599 -43004541 - L2 LINE L2 -1266 2048 1783 314 256 22 22 chrX 133969737 133969827 -43004313 + MIR3 SINE MIR 71 160 -48 510 269 19 6 chrX 133969880 133970036 -43004104 + MER103 DNA DNA 8 165 -1 473 224 152 61 chrX 133970972 133971137 -43003003 - MIR SINE MIR -70 192 13 200 253 147 0 chrX 133971394 133971469 -43002671 + L2 LINE L2 2985 3070 -202 687 210 24 88 chrX 133972262 133972467 -43001673 + MIR SINE MIR 1 192 -70 223 206 14 41 chrX 133973164 133973237 -43000903 + MIR SINE MIR 121 191 -71 592 313 22 22 chrX 133973339 133973566 -43000574 + MIR SINE MIR 31 257 -5 2507 64 0 0 chrX 133973676 133973974 -43000166 + AluY SINE Alu 1 298 -13 4486 198 36 17 chrX 133974882 133975621 -42998519 - L1MB5 LINE L1 -13 6161 5438 2462 65 10 7 chrX 133975621 133975931 -42998209 - AluY SINE Alu 0 311 1 4486 198 36 17 chrX 133975931 133976846 -42997294 - L1MB5 LINE L1 -736 5438 4475 512 288 87 28 chrX 133977411 133977647 -42996493 + MIR SINE MIR 18 262 0 234 302 0 0 chrX 133977922 133977975 -42996165 - L2 LINE L2 -15 3298 3246 641 88 0 0 chrX 133978121 133978201 -42995939 + MADE1 DNA Mariner 1 80 0 580 253 169 6 chrX 133978615 133978781 -42995359 + MIR SINE MIR 57 249 -13 783 227 201 29 chrX 133979322 133979630 -42994510 - L2 LINE L2 -1 3312 2952 2253 71 10 39 chrX 133980284 133980595 -42993545 + AluY SINE Alu 1 302 -9 2008 139 7 3 chrX 133980624 133980927 -42993213 - AluSq SINE Alu -9 304 1 1093 252 49 74 chrX 133980943 133981388 -42992752 - L2 LINE L2 -9 3304 2871 277 233 100 92 chrX 133981390 133981510 -42992630 + MER20B DNA MER1_type 4 124 -659 2254 101 0 26 chrX 133981523 133981829 -42992311 - AluSx SINE Alu -14 298 1 250 171 0 0 chrX 133981831 133981872 -42992268 + MER20B DNA MER1_type 360 400 -383 1002 133 40 0 chrX 133981872 133982022 -42992118 + L1M2 LINE L1 5501 5656 -635 1158 153 0 0 chrX 133982290 133982460 -42991680 + FRAM SINE Alu 1 163 -13 2791 141 2 45 chrX 133982627 133983115 -42991025 + MER31A LTR ERV1 1 467 -18 282 330 119 42 chrX 133984030 133984266 -42989874 - L2 LINE L2 -50 3222 2969 460 241 58 0 chrX 133984373 133984510 -42989630 + L1ME4a LINE L1 5977 6121 0 180 222 0 0 chrX 133985604 133985640 -42988500 - L3 LINE CR1 -1 1576 1541 1881 141 17 10 chrX 133986159 133986449 -42987691 + AluJo SINE Alu 1 292 -20 292 239 83 64 chrX 133987088 133987197 -42986943 + L2 LINE L2 3150 3260 -12 35 24 0 0 chrX 133987218 133987260 -42986880 + AT_rich Low_complexity Low_complexity 1 42 0 228 299 73 36 chrX 133989071 133989208 -42984932 + L2 LINE L2 2865 3006 -266 1698 200 70 14 chrX 133989368 133989723 -42984417 + MLT1E LTR MaLR 218 592 -1 504 305 145 46 chrX 133990063 133990670 -42983470 + L2 LINE L2 2564 3233 -39 225 191 0 0 chrX 133990674 133990721 -42983419 + CT-rich Low_complexity Low_complexity 2 48 0 24 0 0 0 chrX 133990723 133990747 -42983393 + AT_rich Low_complexity Low_complexity 1 24 0 2978 155 8 14 chrX 133990747 133991264 -42982876 - L1MA8 LINE L1 -5 6286 5773 673 227 18 96 chrX 133991841 133992061 -42982079 - MIR3 SINE MIR -3 205 3 30 45 0 0 chrX 133992481 133992525 -42981615 + AT_rich Low_complexity Low_complexity 1 44 0 406 62 118 6 chrX 133992525 133992686 -42981454 + (TA)n Simple_repeat Simple_repeat 2 180 0 463 20 133 0 chrX 133992711 133992861 -42981279 + (TA)n Simple_repeat Simple_repeat 1 170 0 297 127 36 0 chrX 133992862 133992917 -42981223 + MLT2B1 LTR ERVL 464 520 0 218 155 35 86 chrX 133993427 133993485 -42980655 - MIR SINE MIR -80 128 74 443 274 185 0 chrX 133993548 133993694 -42980446 + MIR SINE MIR 13 185 -77 1109 260 120 30 chrX 133994168 133994568 -42979572 + L2 LINE L2 2877 3312 -1 389 250 169 20 chrX 133994570 133994718 -42979422 - MIR SINE MIR -90 172 3 192 341 39 44 chrX 133995141 133995323 -42978817 + L2 LINE L2 603 783 -2531 677 342 21 0 chrX 133996353 133996596 -42977544 + L2 LINE L2 2636 2883 -431 749 310 71 0 chrX 133996601 133996856 -42977284 + L2 LINE L2 2589 2861 -453 355 318 26 13 chrX 133997903 133998057 -42976083 + MIR3 SINE MIR 53 208 0 851 131 0 0 chrX 133998192 133998314 -42975826 + AluSp/q SINE Alu 173 294 -19 1715 164 55 49 chrX 133998521 133998894 -42975246 + L1MA8 LINE L1 4715 5092 -1054 3016 147 12 14 chrX 133998894 133999397 -42974743 + L1MA8 LINE L1 5787 6288 -3 1715 164 55 49 chrX 133999397 133999408 -42974732 + L1MA8 LINE L1 5092 5101 -1045 1209 243 114 91 chrX 134000325 134000836 -42973304 + MLT1E LTR MaLR 1 528 -65 1692 154 60 0 chrX 134000836 134001103 -42973037 - AluSx SINE Alu -27 285 3 1209 243 114 91 chrX 134001103 134001171 -42972969 + MLT1E LTR MaLR 528 593 0 402 323 0 8 chrX 134001289 134001413 -42972727 + MIR SINE MIR 12 134 -128 204 40 0 0 chrX 134001552 134001577 -42972563 + (T)n Simple_repeat Simple_repeat 1 25 0 283 314 68 2 chrX 134001948 134002045 -42972095 - MIR SINE MIR -101 107 2 363 302 32 81 chrX 134002466 134002774 -42971366 + L2 LINE L2 2976 3268 -4 287 182 52 52 chrX 134003026 134003103 -42971037 - LTR33A LTR ERVL 0 523 447 1697 190 0 23 chrX 134003236 134003536 -42970604 - AluJb SINE Alu -19 293 1 350 200 140 53 chrX 134004666 134004816 -42969324 + MLT1J2 LTR MaLR 1 163 -287 463 258 50 17 chrX 134005092 134005212 -42968928 + L2 LINE L2 3149 3272 0 2099 141 3 3 chrX 134005370 134005675 -42968465 + AluSx SINE Alu 1 305 -7 355 237 63 50 chrX 134005702 134005879 -42968261 + MIR SINE MIR 38 212 -50 201 147 0 0 chrX 134005899 134005933 -42968207 + (CA)n Simple_repeat Simple_repeat 1 34 0 238 296 41 51 chrX 134006531 134006629 -42967511 - L2 LINE L2 -7 3265 3169 2015 232 88 53 chrX 134006682 134007285 -42966855 - MLT1E2 LTR MaLR 0 626 1 245 349 9 0 chrX 134007674 134007783 -42966357 + L2 LINE L2 1763 1872 -1442 2301 155 7 16 chrX 134007838 134008222 -42965918 + MLT2B2 LTR ERVL 1 365 -49 273 119 0 0 chrX 134008250 134008292 -42965848 + (CA)n Simple_repeat Simple_repeat 1 42 0 242 208 0 0 chrX 134008293 134008341 -42965799 + MLT2B2 LTR ERVL 367 414 0 250 280 97 0 chrX 134008361 134008454 -42965686 + MIR SINE MIR 109 210 -52 245 296 0 14 chrX 134008628 134008699 -42965441 + L2 LINE L2 3190 3259 -13 201 345 36 12 chrX 134008890 134008974 -42965166 - L3b LINE CR1 -92 1491 1406 450 75 0 0 chrX 134009107 134009174 -42964966 + (TC)n Simple_repeat Simple_repeat 1 67 0 536 256 57 40 chrX 134009323 134009499 -42964641 + MIR SINE MIR 81 259 -3 588 213 0 0 chrX 134010033 134010141 -42963999 - MER5A DNA MER1_type -81 108 1 384 250 117 0 chrX 134010459 134010579 -42963561 - MER117 DNA MER1_type -60 137 4 327 277 151 17 chrX 134010801 134010920 -42963220 - L2 LINE L2 -1 3271 3137 1405 200 41 22 chrX 134013202 134013517 -42960623 - L1ME3A LINE L1 -10 6160 5840 198 0 0 0 chrX 134013887 134013909 -42960231 + (A)n Simple_repeat Simple_repeat 1 22 0 303 235 165 35 chrX 134014195 134014310 -42959830 - L2 LINE L2 -5 3267 3138 678 263 65 26 chrX 134014964 134015196 -42958944 - MIR SINE MIR -1 261 21 231 333 126 0 chrX 134015218 134015353 -42958787 - MIR SINE MIR -57 205 54 784 318 19 12 chrX 134015627 134015885 -42958255 + MIR SINE MIR 3 262 0 515 225 49 21 chrX 134016686 134016828 -42957312 - MIR SINE MIR 0 262 117 340 312 28 9 chrX 134016853 134016962 -42957178 - MIR SINE MIR -60 148 38 21 0 0 0 chrX 134017251 134017272 -42956868 + AT_rich Low_complexity Low_complexity 1 21 0 242 290 43 32 chrX 134017959 134018052 -42956088 - L2 LINE L2 -19 3253 3160 196 333 61 35 chrX 134018676 134018790 -42955350 - L2 LINE L2 -19 3253 3137 24 0 0 0 chrX 134018801 134018825 -42955315 + AT_rich Low_complexity Low_complexity 1 24 0 974 287 42 39 chrX 134018880 134019214 -42954926 - MER102b DNA MER1_type 0 341 7 324 227 53 0 chrX 134019247 134019322 -42954818 + MIR SINE MIR 67 145 -63 423 0 0 0 chrX 134020035 134020082 -42954058 + (GA)n Simple_repeat Simple_repeat 2 48 0 204 40 0 0 chrX 134020613 134020638 -42953502 + (T)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chrX 134021232 134021258 -42952882 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chrX 134021366 134021405 -42952735 + AT_rich Low_complexity Low_complexity 1 39 0 678 267 93 11 chrX 134026319 134026589 -42947551 + L1ME4a LINE L1 5593 5884 -237 572 228 25 12 chrX 134027074 134027236 -42946904 + MER53 DNA DNA 14 177 -12 568 218 21 58 chrX 134027078 134027266 -42946874 - MER53 DNA DNA -8 181 1 * 191 253 110 0 chrX 134027983 134028074 -42946066 + L2 LINE L2 1276 1376 -1938 1057 164 22 0 chrX 134028113 134028296 -42945844 + MER5A DNA MER1_type 1 187 -2 803 336 148 17 chrX 134028305 134028897 -42945243 + L2 LINE L2 1293 1995 -1319 1022 187 50 0 chrX 134028897 134029095 -42945045 + MER3 DNA MER1_type 1 208 -1 803 336 148 17 chrX 134029095 134029214 -42944926 + L2 LINE L2 1995 2097 -1217 228 191 0 0 chrX 134029452 134029494 -42944646 + L1ME3A LINE L1 5552 5593 -528 572 271 25 13 chrX 134029907 134030165 -42943975 - L1MC4 LINE L1 -94 7714 7538 194 189 0 19 chrX 134030316 134030369 -42943771 + CT-rich Low_complexity Low_complexity 3 54 0 3118 234 40 54 chrX 134030394 134031099 -42943041 - L1MC3 LINE L1 -401 5899 6155 5035 155 9 8 chrX 134031099 134031970 -42942170 - L1MC1 LINE L1 0 6333 5462 3118 234 40 54 chrX 134031970 134032285 -42941855 - L1MC3 LINE L1 -144 6156 5838 405 0 0 0 chrX 134032288 134032333 -42941807 + (TG)n Simple_repeat Simple_repeat 2 46 0 296 200 21 28 chrX 134032333 134032478 -42941662 + (TA)n Simple_repeat Simple_repeat 2 145 0 36 70 0 0 chrX 134032490 134032561 -42941579 + AT_rich Low_complexity Low_complexity 1 71 0 304 143 29 29 chrX 134032576 134032716 -42941424 + (TA)n Simple_repeat Simple_repeat 2 141 0 1154 168 0 34 chrX 134033015 134033224 -42940916 - MER2 DNA MER2_type -143 202 1 1715 171 29 26 chrX 134033225 134033565 -42940575 - MLT2C1 LTR ERVL -56 341 1 1258 241 92 5 chrX 134033627 134034008 -42940132 + L1ME3A LINE L1 5757 6170 0 552 259 25 38 chrX 134034017 134034175 -42939965 + MIR SINE MIR 34 189 -73 1762 231 78 44 chrX 134034749 134035273 -42938867 + MLT1F LTR MaLR 1 542 0 382 301 140 17 chrX 134035974 134036167 -42937973 - MIR SINE MIR -42 220 8 270 0 0 0 chrX 134036453 134036483 -42937657 + (T)n Simple_repeat Simple_repeat 1 30 0 1109 220 32 5 chrX 134036739 134036957 -42937183 - MER58A DNA MER1_type 0 224 1 313 277 39 46 chrX 134037026 134037156 -42936984 + LTR67 LTR ERVL 429 557 0 285 260 21 21 chrX 134037205 134037301 -42936839 + MER34 LTR ERV1 1 96 -446 21 0 0 0 chrX 134037301 134037322 -42936818 + AT_rich Low_complexity Low_complexity 1 21 0 1030 205 93 23 chrX 134037334 134037744 -42936396 + LTR48B LTR ERV1 163 644 0 24 32 0 0 chrX 134037958 134037989 -42936151 + AT_rich Low_complexity Low_complexity 1 31 0 314 303 168 0 chrX 134038322 134038441 -42935699 - MIR SINE MIR 0 262 124 2021 159 0 0 chrX 134038480 134038788 -42935352 - AluJb SINE Alu -4 308 1 764 233 17 17 chrX 134039172 134039348 -42934792 + MER5A DNA MER1_type 14 189 0 614 280 160 16 chrX 134039367 134039685 -42934455 + MLT1L LTR MaLR 177 540 -75 692 286 55 41 chrX 134040605 134040972 -42933168 - L1MEd LINE L1 -2029 4615 4244 294 29 0 0 chrX 134041039 134041074 -42933066 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 5681 96 28 2 chrX 134041074 134041910 -42932230 - L1PA11 LINE L1 -7 6167 5311 1012 295 97 12 chrX 134041954 134042646 -42931494 - L1MEd LINE L1 -2510 4134 3384 269 167 17 33 chrX 134042649 134042709 -42931431 - L1MC5 LINE L1 -54 7907 7849 937 194 43 0 chrX 134042717 134042903 -42931237 - L1MB5 LINE L1 -8 6166 5973 1075 274 68 20 chrX 134042922 134043273 -42930867 - L1MC4 LINE L1 -980 7062 6695 2132 115 25 25 chrX 134043567 134043932 -42930208 + L1MA2 LINE L1 5940 6304 0 538 204 86 25 chrX 134044213 134044375 -42929765 - MER104 DNA Tc2 -4 176 5 26 30 0 0 chrX 134044573 134044606 -42929534 + AT_rich Low_complexity Low_complexity 1 33 0 457 243 0 0 chrX 134044691 134044794 -42929346 - L1ME3 LINE L1 -1 6161 6059 569 283 30 34 chrX 134044815 134045206 -42928934 - L1MEd LINE L1 -912 2093 1515 5404 224 44 20 chrX 134045220 134046573 -42927567 - L1ME1 LINE L1 -9 6157 4725 3152 81 23 0 chrX 134046573 134047015 -42927125 - L1PA12 LINE L1 0 6168 5717 5404 224 44 20 chrX 134047015 134047996 -42926144 - L1ME1 LINE L1 -1441 4725 3769 1947 260 16 38 chrX 134048006 134048492 -42925648 - L2 LINE L2 -530 2784 2309 2126 120 0 0 chrX 134048492 134048824 -42925316 + AluSx SINE Alu 1 332 0 1947 260 16 38 chrX 134048824 134048893 -42925247 - L2 LINE L2 -1005 2309 2240 458 230 118 15 chrX 134048894 134049029 -42925111 + MIR SINE MIR 113 261 -1 183 389 29 29 chrX 134049014 134049153 -42924987 - L2 LINE L2 -461 2853 2715 * 219 258 117 148 chrX 134049872 134050128 -42924012 + L2 LINE L2 3019 3266 -6 1518 100 45 0 chrX 134050445 134050665 -42923475 - MER30 DNA MER1_type 0 230 1 336 275 29 7 chrX 134051416 134051554 -42922586 - L1MC4 LINE L1 0 8042 7902 330 165 24 12 chrX 134051554 134051639 -42922501 + (TA)n Simple_repeat Simple_repeat 2 87 0 2116 92 4 0 chrX 134051692 134051965 -42922175 + AluSq SINE Alu 1 274 -39 2818 270 62 33 chrX 134051971 134053259 -42920881 - L1MC4 LINE L1 -98 7710 6427 6073 137 14 6 chrX 134053340 134054577 -42919563 + HSMAR2 DNA Mariner 1 1302 0 371 246 139 32 chrX 134054592 134054779 -42919361 - L1MC4a LINE L1 -1481 6327 6121 447 232 97 7 chrX 134054998 134055153 -42918987 - L1MC4a LINE L1 -1851 5957 5789 206 344 11 0 chrX 134055241 134055331 -42918809 + L3b LINE CR1 1314 1404 -179 22 0 0 0 chrX 134055810 134055832 -42918308 + AT_rich Low_complexity Low_complexity 1 22 0 655 226 151 13 chrX 134056032 134056191 -42917949 + MER5A DNA MER1_type 8 188 -1 183 297 198 0 chrX 134062523 134062614 -42911526 - MIR SINE MIR -21 241 133 549 315 106 37 chrX 134062640 134063209 -42910931 - L2 LINE L2 0 3272 2651 582 325 26 0 chrX 134063209 134063400 -42910740 + MER91A DNA MER1_type 1 196 0 549 315 106 37 chrX 134063400 134063501 -42910639 - L2 LINE L2 -621 2651 2558 2157 160 15 42 chrX 134063676 134064077 -42910063 - MLT1B LTR MaLR 0 390 1 491 268 77 43 chrX 134064162 134064576 -42909564 + L1MC5 LINE L1 7311 7738 -223 248 258 45 15 chrX 134064753 134064819 -42909321 - L2 LINE L2 -705 2609 2542 1393 142 24 5 chrX 134064852 134065064 -42909076 + AluJo SINE Alu 7 222 -90 293 296 75 48 chrX 134065139 134065325 -42908815 - MIR SINE MIR -10 252 62 676 94 189 31 chrX 134066319 134066446 -42907694 + MER69 DNA AcHobo 1 147 -2379 251 212 0 94 chrX 134066443 134066528 -42907612 + MER69 DNA AcHobo 2450 2526 0 * 1798 182 3 19 chrX 134066661 134066974 -42907166 + AluJb SINE Alu 1 308 -4 225 0 0 0 chrX 134067576 134067601 -42906539 + (CA)n Simple_repeat Simple_repeat 2 26 0 2219 117 3 0 chrX 134067656 134067956 -42906184 + AluSx SINE Alu 1 301 -11 231 36 0 0 chrX 134068086 134068114 -42906026 + (CA)n Simple_repeat Simple_repeat 1 28 0 636 304 69 83 chrX 134069119 134069481 -42904659 - L2 LINE L2 -1 3271 2915 671 358 4 12 chrX 134069521 134069761 -42904379 - L2 LINE L2 -534 2780 2543 2206 162 6 6 chrX 134069769 134070134 -42904006 - MLT1A1 LTR MaLR 0 365 1 390 303 148 0 chrX 134070149 134070311 -42903829 - MIR SINE MIR -2 260 75 234 245 250 27 chrX 134070352 134070536 -42903604 - L2 LINE L2 -787 2527 2303 234 190 0 0 chrX 134070540 134070598 -42903542 - L1MC4 LINE L1 -1341 6701 6644 621 289 178 34 chrX 134070644 134071268 -42902872 - L2 LINE L2 -1109 2205 1492 1385 175 26 83 chrX 134071290 134071638 -42902502 - MLT1A2 LTR MaLR -44 330 3 860 202 48 83 chrX 134071638 134071950 -42902190 - MER39 LTR ERV1 0 707 407 395 375 5 5 chrX 134071988 134072180 -42901960 - L2 LINE L2 -2518 796 605 1210 222 0 16 chrX 134072253 134072496 -42901644 - MIR SINE MIR 0 262 24 393 321 8 0 chrX 134072528 134072659 -42901481 - MIR SINE MIR -14 248 117 2380 71 10 0 chrX 134072704 134073012 -42901128 - AluY SINE Alu 0 311 1 280 89 0 0 chrX 134073136 134073181 -42900959 - AluSc SINE Alu 0 299 255 275 328 0 0 chrX 134073886 134073953 -42900187 - L2 LINE L2 0 3272 3206 855 219 61 28 chrX 134073967 134074363 -42899777 - MLT1J2 LTR MaLR 0 450 1 1292 204 61 25 chrX 134074374 134074766 -42899374 + MER113 DNA MER1_type? 1 406 -115 1856 143 61 15 chrX 134074860 134075188 -42898952 - MER61A LTR ERV1 0 343 1 354 318 0 9 chrX 134075222 134075329 -42898811 - MIR SINE MIR -63 145 40 2955 116 7 2 chrX 134075353 134075785 -42898355 - MER57B LTR ERV1 0 434 1 11719 104 103 50 chrX 134075785 134076064 -42898076 - MER57B-int LTR ERV1 0 7537 7274 195 42 0 0 chrX 134076064 134076088 -42898052 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 11719 104 103 50 chrX 134076088 134077927 -42896213 - MER57B-int LTR ERV1 -263 7274 5307 5381 143 87 19 chrX 134077930 134079584 -42894556 - MER57B-int LTR ERV1 -1720 3834 2167 2074 145 53 4 chrX 134079580 134080097 -42894043 - MER57B-int LTR ERV1 -3929 2017 1371 * 3284 135 56 4 chrX 134080087 134080813 -42893327 - MER57B-int LTR ERV1 -4810 1136 288 * 3989 140 38 1 chrX 134080807 134081458 -42892682 - MER57B-int LTR ERV1 -6862 675 1 871 126 3 0 chrX 134081467 134081617 -42892523 - MER57B LTR ERV1 -6 428 245 1562 125 3 78 chrX 134081774 134082147 -42891993 - MER4A LTR ERV1 0 664 261 513 141 10 20 chrX 134082147 134082246 -42891894 - MER4A LTR ERV1 -566 98 1 3930 89 9 2 chrX 134082250 134082800 -42891340 - MER41A LTR ERV1 0 554 1 377 309 49 8 chrX 134082800 134082923 -42891217 + L2 LINE L2 3144 3271 -1 321 68 0 0 chrX 134083789 134083833 -42890307 + (GA)n Simple_repeat Simple_repeat 1 44 0 354 229 0 0 chrX 134083897 134083967 -42890173 + MIR SINE MIR 190 259 -3 408 295 43 22 chrX 134084032 134084171 -42889969 + MIR3 SINE MIR 19 160 -48 303 300 50 39 chrX 134084918 134085098 -42889042 + MIR SINE MIR 35 216 -46 238 309 85 11 chrX 134085518 134085612 -42888528 - L2 LINE L2 -5 3308 3208 875 124 21 36 chrX 134086074 134086268 -42887872 - L1MA7 LINE L1 0 6291 6101 773 208 159 4 chrX 134086268 134086494 -42887646 - MER2 DNA MER2_type -2 343 83 6469 28 0 0 chrX 134086500 134087287 -42886853 - L1PA5 LINE L1 0 6154 5368 599 168 11 0 chrX 134087287 134087382 -42886758 - MER2 DNA MER2_type -248 97 2 1423 108 8 25 chrX 134087384 134087624 -42886516 - L1MA7 LINE L1 -188 6103 5868 * 1444 131 82 0 chrX 134087621 134087827 -42886313 + L1MA7 LINE L1 5575 5809 -482 458 33 17 0 chrX 134087827 134087887 -42886253 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1444 131 82 0 chrX 134087887 134087948 -42886192 + L1MA7 LINE L1 5809 5864 -427 204 97 0 0 chrX 134088411 134088442 -42885698 + (CA)n Simple_repeat Simple_repeat 2 32 0 3578 74 6 0 chrX 134088478 134088951 -42885189 + L1PA7 LINE L1 5678 6153 -1 322 230 10 157 chrX 134089297 134089436 -42884704 + MER5B DNA MER1_type 3 104 -74 1981 149 0 32 chrX 134089436 134089744 -42884396 - AluJb SINE Alu -14 298 1 322 230 10 157 chrX 134089744 134089808 -42884332 + MER5B DNA MER1_type 104 176 -2 1231 168 26 9 chrX 134089954 134090186 -42883954 + L1PA16 LINE L1 5915 6150 -16 1958 139 43 40 chrX 134090415 134090789 -42883351 + THE1C LTR MaLR 1 375 0 1485 108 9 4 chrX 134090792 134091023 -42883117 + THE1C-int LTR MaLR 4 235 -1345 * 6665 120 15 6 chrX 134091022 134092067 -42882073 + THE1C-int LTR MaLR 526 1580 0 1662 175 51 40 chrX 134092067 134092438 -42881702 + THE1C LTR MaLR 1 375 0 448 301 164 10 chrX 134093327 134093717 -42880423 - L2 LINE L2 -49 3264 2707 3610 176 116 91 chrX 134093719 134094278 -42879862 - L1MC3 LINE L1 -1 7784 7240 290 260 0 83 chrX 134094278 134094374 -42879766 - MLT1F1 LTR MaLR -443 124 37 3610 176 116 91 chrX 134094374 134094928 -42879212 - L1MC3 LINE L1 -545 7240 6546 1622 274 25 49 chrX 134095021 134095616 -42878524 - L2 LINE L2 -659 2655 2075 1001 257 27 27 chrX 134096194 134096451 -42877689 + MIR SINE MIR 3 259 -3 1724 111 0 153 chrX 134096452 134096793 -42877347 + AluSx SINE Alu 1 289 -23 700 316 151 15 chrX 134096912 134097304 -42876836 - L2 LINE L2 -4 3309 2865 838 278 59 43 chrX 134097316 134097572 -42876568 + MLT1J2 LTR MaLR 1 265 -185 2177 127 3 0 chrX 134097572 134097872 -42876268 - AluSq SINE Alu -12 301 1 838 278 59 43 chrX 134097872 134097939 -42876201 + MLT1J2 LTR MaLR 265 329 -121 183 337 84 73 chrX 134098280 134098458 -42875682 + L2 LINE L2 3079 3258 -14 267 193 34 0 chrX 134099608 134099696 -42874444 + (TA)n Simple_repeat Simple_repeat 2 92 0 192 306 133 51 chrX 134099848 134099946 -42874194 - MIR3 SINE MIR -101 107 2 226 292 44 71 chrX 134100216 134100329 -42873811 + MIR SINE MIR 2 111 -151 922 242 33 5 chrX 134100372 134100587 -42873553 - MIR SINE MIR -30 232 12 500 263 17 0 chrX 134100598 134100716 -42873424 + MIR SINE MIR 143 262 0 601 256 7 15 chrX 134101067 134101204 -42872936 + L2 LINE L2 3137 3272 0 463 274 211 10 chrX 134101538 134101746 -42872394 - L2 LINE L2 -9 3263 3014 431 259 36 0 chrX 134102121 134102233 -42871907 - MIR SINE MIR -65 143 28 3369 236 62 58 chrX 134102523 134104225 -42869915 - L1MC4 LINE L1 -92 7950 6103 365 278 81 34 chrX 134104266 134104344 -42869796 - L1MEd LINE L1 -2845 3284 3211 1962 142 0 14 chrX 134104344 134104655 -42869485 - AluJb SINE Alu 0 307 1 365 278 81 34 chrX 134104655 134104960 -42869180 - L1MEd LINE L1 -2918 3211 2882 659 187 155 7 chrX 134105170 134105325 -42868815 - MER63A DNA MER1_type -31 179 2 817 285 22 88 chrX 134105476 134105886 -42868254 + MLT1J LTR MaLR 1 383 -128 312 309 33 11 chrX 134105891 134106072 -42868068 - L1MEd LINE L1 -5021 1098 914 1248 231 36 7 chrX 134106451 134106758 -42867382 - MER58B DNA MER1_type -24 317 2 255 61 0 0 chrX 134106997 134107030 -42867110 + (CA)n Simple_repeat Simple_repeat 2 34 0 9769 235 54 42 chrX 134108264 134111238 -42862902 + L2 LINE L2 301 3296 -17 1276 186 8 12 chrX 134111400 134111658 -42862482 + L1MD3 LINE L1 7731 7987 -8 1794 199 44 48 chrX 134111766 134112244 -42861896 + MLT1D LTR MaLR 26 501 -4 313 293 167 29 chrX 134112244 134112418 -42861722 - MIR SINE MIR -59 203 6 327 228 0 65 chrX 134113134 134113226 -42860914 - MIR SINE MIR -74 188 103 22 0 0 0 chrX 134114284 134114306 -42859834 + AT_rich Low_complexity Low_complexity 1 22 0 1407 189 3 61 chrX 134114850 134115193 -42858947 + MLT2C1 LTR ERVL 1 323 -74 1632 313 7 55 chrX 134115561 134116271 -42857869 - L2 LINE L2 -541 2773 2098 23 68 0 0 chrX 134116635 134116679 -42857461 + AT_rich Low_complexity Low_complexity 1 44 0 281 324 126 0 chrX 134116729 134116840 -42857300 - L2 LINE L2 -14 3258 3134 232 287 116 16 chrX 134117265 134117394 -42856746 + L2 LINE L2 1932 2073 -1241 * 274 276 92 0 chrX 134117361 134117437 -42856703 + L2 LINE L2 3216 3298 -15 646 339 98 43 chrX 134117451 134118097 -42856043 + L2 LINE L2 2065 2745 -569 23 0 0 0 chrX 134118097 134118120 -42856020 + AT_rich Low_complexity Low_complexity 1 23 0 600 256 110 64 chrX 134118146 134118536 -42855604 - MLT1L LTR MaLR 0 615 208 194 348 51 34 chrX 134118640 134118758 -42855382 + L2 LINE L2 3138 3257 -15 1451 174 67 12 chrX 134118764 134119091 -42855049 - L1MB7 LINE L1 -9 6175 5831 * 4821 115 12 47 chrX 134119082 134119920 -42854220 + L1PA15 LINE L1 5344 6152 -13 2996 170 11 0 chrX 134119928 134120544 -42853596 - L1MB7 LINE L1 -331 5843 5223 319 240 151 47 chrX 134121546 134121698 -42852442 + MIR SINE MIR 1 166 -63 2114 115 0 0 chrX 134121703 134121989 -42852151 + AluSx SINE Alu 27 312 0 490 343 164 24 chrX 134122030 134122902 -42851238 - L2 LINE L2 -610 2704 1711 476 255 64 36 chrX 134123626 134123839 -42850301 - MIR SINE MIR -50 212 1 198 311 68 19 chrX 134124909 134125012 -42849128 + L2 LINE L2 2630 2737 -577 312 27 0 0 chrX 134126016 134126053 -42848087 + (TCCA)n Simple_repeat Simple_repeat 4 40 0 417 256 38 109 chrX 134126053 134126258 -42847882 - L2 LINE L2 -7 3265 3076 3189 171 16 74 chrX 134177456 134177529 -42796611 + L1MC3 LINE L1 5461 5537 -2248 2656 42 0 0 chrX 134177529 134177835 -42796305 + AluY SINE Alu 1 306 -5 3189 171 16 74 chrX 134177835 134178529 -42795611 + L1MC3 LINE L1 5537 6183 -1602 2542 236 10 9 chrX 134178634 134179309 -42794831 - L1M4 LINE L1 -2185 3961 3286 7154 130 3 5 chrX 134179310 134180449 -42793691 + Tigger1 DNA MER2_type 1 1137 -1281 4645 61 2 0 chrX 134180449 134181035 -42793105 - L1PA7 LINE L1 0 6154 5568 235 333 45 30 chrX 134181226 134181358 -42792782 + L2 LINE L2 3178 3311 -2 180 111 0 0 chrX 134181495 134181522 -42792618 + (CA)n Simple_repeat Simple_repeat 1 27 0 191 371 0 0 chrX 134182273 134182335 -42791805 - L3 LINE CR1 -7 1570 1509 324 286 67 21 chrX 134183181 134183419 -42790721 + L1ME4a LINE L1 5570 5818 -303 2047 140 7 3 chrX 134183561 134183869 -42790271 + AluSx SINE Alu 1 309 -3 411 171 0 0 chrX 134183869 134183945 -42790195 + GA-rich Low_complexity Low_complexity 3 78 0 406 221 41 28 chrX 134183953 134184098 -42790042 + L1ME4a LINE L1 5974 6120 -1 1309 288 90 13 chrX 134184217 134184695 -42789445 - MLT1G1 LTR MaLR -25 570 15 247 269 54 54 chrX 134185192 134185285 -42788855 + L2 LINE L2 3180 3272 0 376 206 266 14 chrX 134185445 134185651 -42788489 - L2 LINE L2 -1 3312 2977 728 200 29 0 chrX 134185802 134185972 -42788168 + L1MC5 LINE L1 7729 7903 -58 650 315 9 0 chrX 134186198 134186414 -42787726 + MLT1J LTR MaLR 52 269 -242 249 262 24 0 chrX 134186516 134186600 -42787540 + MLT1J LTR MaLR 411 496 -15 626 312 83 25 chrX 134186922 134187430 -42786710 + L1MC4a LINE L1 5280 5757 -2051 282 29 0 0 chrX 134187430 134187465 -42786675 + (TG)n Simple_repeat Simple_repeat 1 35 0 270 0 0 0 chrX 134187464 134187494 -42786646 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 626 312 83 25 chrX 134187465 134187588 -42786552 + L1MC4a LINE L1 5757 5917 -1891 3064 156 20 7 chrX 134187682 134188271 -42785869 - L1MC3 LINE L1 0 7785 7189 347 224 0 0 chrX 134188271 134188347 -42785793 - MLT1F1 LTR MaLR -442 125 50 3995 228 69 26 chrX 134188456 134189447 -42784693 - L1M4 LINE L1 -749 5397 4450 2244 100 33 0 chrX 134189447 134189747 -42784393 - AluSx SINE Alu -2 310 1 3995 228 69 26 chrX 134189747 134189850 -42784290 - L1M4 LINE L1 -1696 4450 4353 233 87 0 22 chrX 134189850 134189896 -42784244 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 3995 228 69 26 chrX 134189896 134190204 -42783936 - L1M4 LINE L1 -1793 4353 3934 507 236 21 35 chrX 134190404 134190548 -42783592 + MLT1J1 LTR MaLR 1 142 -304 435 271 42 54 chrX 134190634 134190800 -42783340 + MLT1J2 LTR MaLR 281 506 -5 396 0 0 0 chrX 134190810 134190854 -42783286 + (TG)n Simple_repeat Simple_repeat 2 45 0 863 202 56 56 chrX 134190997 134191210 -42782930 + LTR33 LTR ERVL 1 213 -308 579 320 101 4 chrX 134192455 134192683 -42781457 + MIR SINE MIR 13 262 0 10637 202 58 15 chrX 134193148 134196289 -42777851 + L1MDa LINE L1 18 3292 -3248 408 332 67 0 chrX 134196550 134196743 -42777397 + MIR SINE MIR 4 209 -53 1943 139 17 13 chrX 134196828 134197130 -42777010 + AluSx SINE Alu 5 307 -5 2139 117 3 0 chrX 134197194 134197485 -42776655 + AluSx SINE Alu 1 292 -20 195 42 0 0 chrX 134197485 134197509 -42776631 + (CAT)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chrX 134197723 134197746 -42776394 + AT_rich Low_complexity Low_complexity 1 23 0 794 306 31 26 chrX 134198039 134198464 -42775676 + LTR16B LTR ERVL 38 464 0 357 311 68 68 chrX 134199514 134199704 -42774436 + L2 LINE L2 3044 3233 -39 189 0 0 0 chrX 134199877 134199898 -42774242 + (TAA)n Simple_repeat Simple_repeat 3 23 0 237 284 114 40 chrX 134199908 134200084 -42774056 - MIR SINE MIR -6 256 68 190 245 64 53 chrX 134200021 134200115 -42774025 - L2 LINE L2 -2765 549 455 * 215 280 152 26 chrX 134200189 134200426 -42773714 + L2 LINE L2 1798 2073 -1241 2272 107 3 10 chrX 134200426 134200734 -42773406 - AluSx SINE Alu -6 306 1 215 280 152 26 chrX 134200734 134200760 -42773380 + L2 LINE L2 2073 2094 -1220 313 324 29 0 chrX 134200830 134200932 -42773208 - MIR SINE MIR -67 141 37 807 166 0 14 chrX 134200932 134201077 -42773063 - FLAM_C SINE Alu 0 143 1 272 314 84 62 chrX 134201677 134201903 -42772237 + MIR SINE MIR 7 237 -25 320 261 70 49 chrX 134202194 134202336 -42771804 - MIR SINE MIR 0 262 118 446 306 185 37 chrX 134202764 134203061 -42771079 + L2 LINE L2 2932 3272 0 218 385 8 0 chrX 134203316 134203433 -42770707 - L2 LINE L2 -264 3008 2891 2699 26 0 0 chrX 134203473 134203784 -42770356 + AluYa5 SINE Alu 1 311 0 1660 222 48 35 chrX 134204183 134204705 -42769435 + L1ME1 LINE L1 5629 6157 -9 4841 138 44 7 chrX 134204776 134204867 -42769273 - L1MC1 LINE L1 -1 6332 6246 279 0 0 0 chrX 134204867 134204898 -42769242 + (CA)n Simple_repeat Simple_repeat 2 32 0 4841 138 44 7 chrX 134204898 134205647 -42768493 - L1MC1 LINE L1 -87 6246 5461 3125 34 5 3 chrX 134205647 134206023 -42768117 - L1PA5 LINE L1 -4 6150 5770 1716 80 19 10 chrX 134206023 134206330 -42767810 - L1PA4 LINE L1 0 6155 5677 1052 214 11 39 chrX 134206330 134206516 -42767624 - L1MC1 LINE L1 -744 5402 5212 2782 13 0 0 chrX 134206516 134206822 -42767318 - AluY SINE Alu -5 306 1 1052 214 11 39 chrX 134206822 134207121 -42767019 - L1MC1 LINE L1 -934 5212 4985 6707 125 4 5 chrX 134207221 134208276 -42765864 + Tigger1 DNA MER2_type 86 1139 -1279 29321 103 10 17 chrX 134208276 134213928 -42760212 - L1PA7 LINE L1 -2 7590 1148 231 177 114 0 chrX 134213963 134214042 -42760098 + L1M4 LINE L1 2241 2328 -3818 231 177 114 0 chrX 134214061 134214140 -42760000 + L1M4 LINE L1 2241 2328 -3818 1239 160 89 38 chrX 134214154 134214447 -42759693 + THE1C LTR MaLR 68 375 0 * 2959 104 26 58 chrX 134214447 134214976 -42759164 + Tigger1 DNA MER2_type 1402 1913 -505 975 267 48 0 chrX 134215002 134215339 -42758801 - L1MCa LINE L1 -3546 2880 2528 * 41289 46 5 1 chrX 134215338 134221470 -42752670 - L1PA4 LINE L1 0 6155 1 8706 152 117 59 chrX 134221471 134221540 -42752600 - L1MCa LINE L1 -3886 2540 2476 1431 183 0 0 chrX 134221540 134221802 -42752338 - L1PB4 LINE L1 -3 6153 5892 8706 152 117 59 chrX 134221802 134221813 -42752327 - L1MCa LINE L1 -3950 2476 2467 1627 212 3 3 chrX 134221813 134222110 -42752030 - AluJo SINE Alu -15 297 1 8706 152 117 59 chrX 134222110 134222561 -42751579 - L1MCa LINE L1 -3959 2467 2043 324 0 0 0 chrX 134222561 134222597 -42751543 + (CA)n Simple_repeat Simple_repeat 1 36 0 8706 152 117 59 chrX 134222597 134224423 -42749717 - L1MCa LINE L1 -4383 2043 51 534 335 32 0 chrX 134224983 134225141 -42748999 + L2 LINE L2 3101 3263 -9 419 270 0 30 chrX 134225312 134225412 -42748728 - L2 LINE L2 -2 3270 3174 357 211 56 0 chrX 134225575 134225646 -42748494 + L2 LINE L2 3239 3313 0 2532 111 41 2 chrX 134225888 134226303 -42747837 - L1MA2 LINE L1 0 6304 5874 308 111 0 0 chrX 134226303 134226348 -42747792 + L1MA2 LINE L1 5839 5883 -417 225 294 98 0 chrX 134226353 134226455 -42747685 - MIR SINE MIR -12 250 139 1166 175 49 0 chrX 134226455 134226701 -42747439 - L1MA9 LINE L1 0 6312 6055 392 182 8 25 chrX 134226740 134226861 -42747279 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 374 306 18 9 chrX 134226879 134226990 -42747150 - MIR SINE MIR -121 141 30 377 254 36 22 chrX 134227095 134227233 -42746907 + HAL1 LINE L1 2 141 -2366 345 290 24 8 chrX 134227801 134227925 -42746215 + HAL1 LINE L1 738 863 -1644 992 282 129 21 chrX 134227925 134228311 -42745829 + L2 LINE L2 2544 2971 -343 421 202 231 74 chrX 134228287 134228490 -42745650 + L2 LINE L2 3079 3313 0 * 30 27 0 0 chrX 134228564 134228601 -42745539 + AT_rich Low_complexity Low_complexity 1 37 0 1173 217 9 46 chrX 134228665 134228988 -42745152 + L1M4 LINE L1 2 312 -6230 372 22 0 0 chrX 134228994 134229039 -42745101 + (TG)n Simple_repeat Simple_repeat 2 46 0 1278 131 0 0 chrX 134229041 134229239 -42744901 - MER46A DNA MER2_type -1 235 38 243 0 0 0 chrX 134229255 134229282 -42744858 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 114 0 0 chrX 134229285 134229320 -42744820 + (TG)n Simple_repeat Simple_repeat 2 36 0 1851 215 48 22 chrX 134229577 134230442 -42743698 + L1ME2 LINE L1 4789 5680 -486 239 271 25 8 chrX 134230491 134230613 -42743527 + HAL1 LINE L1 2258 2381 -126 8735 32 11 0 chrX 134230670 134232485 -42741655 + L1PA3 LINE L1 4329 6152 -3 244 151 75 0 chrX 134232587 134232640 -42741500 + L1ME2 LINE L1 5903 5959 -205 30 0 0 0 chrX 134232669 134232699 -42741441 + AT_rich Low_complexity Low_complexity 1 30 0 684 202 0 8 chrX 134232699 134232818 -42741322 - FLAM_A SINE Alu -14 119 2 467 205 6 64 chrX 134232820 134232976 -42741164 + L1MC4 LINE L1 7895 8041 -1 724 218 15 34 chrX 134233053 134233259 -42740881 + L1ME2 LINE L1 5963 6164 0 270 212 39 134 chrX 134233285 134233516 -42740624 + L1MC4 LINE L1 7832 8040 -2 303 298 60 26 chrX 134234016 134234167 -42739973 + L1MC4 LINE L1 7885 8040 -2 383 266 54 11 chrX 134234697 134234881 -42739259 + L1ME3A LINE L1 5734 5925 -245 630 226 27 0 chrX 134235558 134235704 -42738436 + MLT1L LTR MaLR 466 615 0 204 203 31 78 chrX 134235704 134235768 -42738372 - L2 LINE L2 -75 3197 3137 1739 155 29 80 chrX 134235773 134236079 -42738061 - MLT1C LTR MaLR 0 467 182 2903 89 19 7 chrX 134236079 134236494 -42737646 - L1PA8 LINE L1 -7 6165 5746 1739 155 29 80 chrX 134236494 134236562 -42737578 - MLT1C LTR MaLR -285 182 112 5390 107 7 13 chrX 134236565 134237396 -42736744 - L1PA10 LINE L1 0 6168 5343 617 129 86 17 chrX 134237398 134237514 -42736626 - MLT1C LTR MaLR -266 124 1 1002 306 15 20 chrX 134237944 134238166 -42735974 - LTR16A LTR ERVL -26 424 203 1976 221 101 29 chrX 134238166 134238719 -42735421 + MLT1E LTR MaLR 1 593 0 1002 306 15 20 chrX 134238719 134238888 -42735252 - LTR16A LTR ERVL -247 203 35 534 198 53 14 chrX 134238959 134239182 -42734958 - MLT1B LTR MaLR -15 375 174 283 148 0 74 chrX 134239364 134239418 -42734722 + MIR SINE MIR 52 101 -161 1132 265 85 50 chrX 134239423 134240075 -42734065 - L2 LINE L2 0 3313 2642 1876 214 52 74 chrX 134240104 134240301 -42733839 + MLT1E2 LTR MaLR 8 208 -418 6955 57 7 1 chrX 134240301 134241360 -42732780 + L1PA7 LINE L1 5079 6141 -13 1876 214 52 74 chrX 134241360 134241797 -42732343 + MLT1E2 LTR MaLR 208 613 -13 796 273 215 73 chrX 134241802 134242322 -42731818 - L2 LINE L2 -659 2655 2062 578 252 69 0 chrX 134242318 134242477 -42731663 + MIR SINE MIR 93 262 0 * 805 270 21 25 chrX 134244194 134244333 -42729807 + MIR SINE MIR 22 161 -101 1284 176 95 97 chrX 134244333 134244724 -42729416 - MLT1B LTR MaLR 0 390 1 805 270 21 25 chrX 134244724 134244825 -42729315 + MIR SINE MIR 161 261 -1 24 53 0 0 chrX 134245538 134245576 -42728564 + AT_rich Low_complexity Low_complexity 1 38 0 798 182 30 24 chrX 134245609 134245774 -42728366 + FRAM SINE Alu 1 166 0 317 145 16 0 chrX 134245795 134245857 -42728283 + GA-rich Low_complexity Low_complexity 1 63 0 993 103 17 6 chrX 134245857 134246032 -42728108 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 379 294 182 7 chrX 134246171 134246314 -42727826 + MIR3 SINE MIR 13 180 -28 987 313 39 31 chrX 134246536 134247025 -42727115 + L2 LINE L2 2384 2876 -438 212 347 42 21 chrX 134247026 134247170 -42726970 + L2 LINE L2 2677 2823 -491 425 227 19 92 chrX 134247280 134247487 -42726653 - L1MC5 LINE L1 -37 7924 7733 346 343 50 28 chrX 134247514 134247695 -42726445 + L2 LINE L2 2875 3059 -213 282 234 54 174 chrX 134247872 134248039 -42726101 + L2 LINE L2 3121 3267 -5 515 260 142 30 chrX 134248065 134248234 -42725906 + MIR SINE MIR 20 207 -55 239 238 0 0 chrX 134248319 134248361 -42725779 + L2 LINE L2 3210 3251 -21 575 240 8 0 chrX 134248669 134248794 -42725346 - MER94 DNA DNA -8 126 1 554 311 26 83 chrX 134249742 134250006 -42724134 - L2 LINE L2 -35 3237 2989 523 302 0 8 chrX 134250044 134250173 -42723967 - L2 LINE L2 0 3272 3145 22 94 0 0 chrX 134250708 134250772 -42723368 + AT_rich Low_complexity Low_complexity 1 64 0 1288 197 24 29 chrX 134251020 134251373 -42722767 - L1ME2 LINE L1 -44 6120 5772 222 91 0 0 chrX 134251837 134251870 -42722270 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 649 329 155 7 chrX 134251871 134252297 -42721843 - L2 LINE L2 -343 2971 2483 415 219 60 33 chrX 134252306 134252457 -42721683 + L1ME4a LINE L1 5963 6117 -4 234 314 0 12 chrX 134252683 134252769 -42721371 - MARNA DNA Mariner -212 374 290 307 240 15 103 chrX 134252798 134253002 -42721138 - MARNA DNA Mariner -296 290 105 1234 256 77 93 chrX 134254266 134254954 -42719186 + L2 LINE L2 1821 2497 -817 480 290 35 30 chrX 134254957 134255126 -42719014 - L2 LINE L2 -919 2395 2226 473 329 69 66 chrX 134255142 134255269 -42718871 - L2 LINE L2 -824 2490 2365 2232 116 0 46 chrX 134255269 134255596 -42718544 + AluSx SINE Alu 1 312 0 473 329 69 66 chrX 134255596 134255818 -42718322 - L2 LINE L2 -949 2365 2140 203 214 0 0 chrX 134255951 134255993 -42718147 - MIR3 SINE MIR -16 192 151 580 230 43 7 chrX 134256057 134256196 -42717944 + MIR SINE MIR 114 257 -5 434 216 41 10 chrX 134256226 134256323 -42717817 - MER5B DNA MER1_type -78 100 1 480 209 186 0 chrX 134256331 134256484 -42717656 - MER5A DNA MER1_type 0 189 4 241 250 47 16 chrX 134256518 134256582 -42717558 - MIR SINE MIR -152 110 45 1677 161 7 21 chrX 134257006 134257337 -42716803 + AluJo SINE Alu 1 327 0 298 95 0 0 chrX 134257795 134257837 -42716303 - L1PA5 LINE L1 -40 6114 6073 698 45 0 0 chrX 134257944 134258033 -42716107 + L1PA5 LINE L1 6064 6152 -2 376 288 65 60 chrX 134258749 134258933 -42715207 + MIR3 SINE MIR 17 201 -7 660 240 6 23 chrX 134259244 134259415 -42714725 + MIR SINE MIR 36 203 -59 309 51 0 0 chrX 134260405 134260444 -42713696 + (ATG)n Simple_repeat Simple_repeat 2 40 0 421 253 11 0 chrX 134260583 134260674 -42713466 + MIR SINE MIR 50 141 -121 182 179 0 26 chrX 134260948 134260987 -42713153 - L3b LINE CR1 -322 1261 1224 191 323 31 0 chrX 134261224 134261289 -42712851 + L2 LINE L2 3239 3305 -8 1206 176 178 1 chrX 134261734 134262088 -42712052 + L1MB3 LINE L1 5744 6175 -8 420 20 0 0 chrX 134263149 134263198 -42710942 + (ATG)n Simple_repeat Simple_repeat 2 50 0 386 257 7 57 chrX 134263202 134263342 -42710798 - MIR SINE MIR -11 251 119 1654 182 17 7 chrX 134263429 134263731 -42710409 + AluJo SINE Alu 1 305 -7 29095 36 1 1 chrX 134263739 134269886 -42704254 + L1PA3 LINE L1 8 6155 0 1073 224 74 40 chrX 134269972 134270351 -42703789 + MARNA DNA Mariner 20 411 -175 1821 192 0 3 chrX 134272186 134272494 -42701646 + AluJb SINE Alu 6 312 0 431 311 27 7 chrX 134274022 134274170 -42699970 + MIR SINE MIR 38 188 -74 389 323 39 0 chrX 134275065 134275195 -42698945 - MIR SINE MIR -55 153 19 1896 128 52 27 chrX 134275803 134276131 -42698009 + MER44D DNA MER2_type 1 606 -3 362 234 37 37 chrX 134276786 134276893 -42697247 - L1ME2 LINE L1 -3 6161 6055 237 88 0 0 chrX 134276893 134276927 -42697213 - MER3 DNA MER1_type -160 49 16 1453 219 28 0 chrX 134277074 134277361 -42696779 + MLT1G LTR MaLR 1 295 -295 2644 211 24 10 chrX 134277374 134278110 -42696030 - L1ME2 LINE L1 -331 5833 5089 223 255 0 0 chrX 134278197 134278244 -42695896 + L2 LINE L2 2584 2630 -684 591 281 53 46 chrX 134278258 134278528 -42695612 + L2 LINE L2 2335 2602 -712 2169 124 0 0 chrX 134278528 134278826 -42695314 - AluSx SINE Alu -14 298 1 591 281 53 46 chrX 134278826 134278909 -42695231 + L2 LINE L2 2602 2694 -620 2742 214 46 3 chrX 134278909 134279473 -42694667 - MLT1G LTR MaLR -2 588 1 591 281 53 46 chrX 134279473 134279534 -42694606 + L2 LINE L2 2694 2753 -561 612 266 202 3 chrX 134279770 134280067 -42694073 + L1ME4a LINE L1 5558 5913 -208 283 141 0 99 chrX 134280072 134280143 -42693997 + L2 LINE L2 3229 3292 -21 247 141 62 0 chrX 134280147 134280211 -42693929 + (TA)n Simple_repeat Simple_repeat 1 68 0 746 242 19 57 chrX 134280232 134280349 -42693791 - MIR SINE MIR -3 259 139 922 217 0 0 chrX 134280349 134280510 -42693630 - FRAM SINE Alu -5 161 1 746 242 19 57 chrX 134280510 134280656 -42693484 - MIR SINE MIR -123 139 6 539 204 41 20 chrX 134280685 134280832 -42693308 + L1ME4a LINE L1 5965 6114 -7 273 321 109 15 chrX 134281813 134281950 -42692190 + MIR SINE MIR 8 157 -105 210 71 0 0 chrX 134282338 134282366 -42691774 + (TG)n Simple_repeat Simple_repeat 1 28 0 257 280 28 28 chrX 134282567 134282674 -42691466 + MIR SINE MIR 150 256 -6 837 225 77 5 chrX 134283101 134283310 -42690830 - MER58A DNA MER1_type 0 224 1 1309 139 11 114 chrX 134283321 134283413 -42690727 - MER33 DNA MER1_type -2266 319 219 2150 145 0 0 chrX 134283413 134283717 -42690423 + AluSx SINE Alu 1 304 -8 1309 139 11 114 chrX 134283717 134283775 -42690365 - MER33 DNA MER1_type -2366 219 157 2435 129 49 35 chrX 134283775 134284202 -42689938 - Tigger2a DNA MER2_type -1 433 1 1309 139 11 114 chrX 134284202 134284294 -42689846 - MER33 DNA MER1_type -2428 157 120 2669 140 53 18 chrX 134284294 134284745 -42689395 + MLT1C LTR MaLR 1 467 0 1309 139 11 114 chrX 134284745 134284852 -42689288 - MER33 DNA MER1_type -2465 120 4 1116 199 65 109 chrX 134285288 134285691 -42688449 + LTR52 LTR ERVL 1 385 -36 4920 200 68 64 chrX 134285733 134287086 -42687054 + LTR52-int LTR ERVL 1 1359 -2197 3046 227 84 19 chrX 134287098 134287858 -42686282 + LTR52-int LTR ERVL 2075 2948 -608 2305 172 45 2 chrX 134287829 134288230 -42685910 + LTR52-int LTR ERVL 3139 3556 0 * 1387 215 43 46 chrX 134288236 134288627 -42685513 + LTR52 LTR ERVL 9 398 -23 184 228 109 20 chrX 134289980 134290081 -42684059 - MIR SINE MIR -42 220 111 260 132 0 0 chrX 134290625 134290663 -42683477 + tRNA-Thr-ACA tRNA tRNA 2 39 -37 259 209 26 183 chrX 134292487 134292678 -42681462 - MIR SINE MIR -21 241 81 2290 85 0 0 chrX 134293640 134293962 -42680178 - AluSg SINE Alu 0 322 1 2017 134 0 37 chrX 134294333 134294654 -42679486 + AluSx SINE Alu 1 309 -3 2364 202 19 87 chrX 134294956 134295592 -42678548 + L1MC5 LINE L1 7183 7754 -207 2359 200 17 2 chrX 134295592 134296066 -42678074 + L1MB7 LINE L1 5694 6174 -10 2364 202 19 87 chrX 134296066 134296237 -42677903 + L1MC5 LINE L1 7754 7935 -26 885 142 0 8 chrX 134296842 134296976 -42677164 + FLAM_C SINE Alu 1 133 0 189 0 0 0 chrX 134298400 134298421 -42675719 + (TG)n Simple_repeat Simple_repeat 1 21 0 1723 198 11 33 chrX 134298928 134299292 -42674848 + MLT1A1 LTR MaLR 10 365 0 202 316 0 0 chrX 134300881 134300938 -42673202 - MIR3 SINE MIR -40 168 112 365 283 99 11 chrX 134301047 134301235 -42672905 + MIR SINE MIR 8 211 -51 1122 179 42 16 chrX 134301239 134301696 -42672444 + L1MB8 LINE L1 5327 5880 -298 1685 154 6 58 chrX 134301696 134302008 -42672132 + AluSx SINE Alu 1 296 -16 1122 179 42 16 chrX 134302008 134302301 -42671839 + L1MB8 LINE L1 5880 6164 -14 1556 219 138 3 chrX 134302334 134302718 -42671422 + MER63B DNA MER1_type 1 436 0 305 93 0 0 chrX 134302776 134302819 -42671321 + L1M4 LINE L1 5678 5720 -454 384 289 22 7 chrX 134303520 134303658 -42670482 + MIR SINE MIR 50 192 -62 2234 95 0 3 chrX 134303711 134304045 -42670095 + AluSq SINE Alu 1 333 0 189 351 48 55 chrX 134304066 134304231 -42669909 + MIR SINE MIR 6 169 -93 518 280 13 0 chrX 134304570 134304607 -42669533 - L1MA10 LINE L1 0 6334 6298 1586 234 65 39 chrX 134304607 134305192 -42668948 - L1ME2 LINE L1 -30 6201 5568 4195 244 45 43 chrX 134305249 134305950 -42668190 - L1ME2 LINE L1 -5002 1394 687 1514 12 0 0 chrX 134305950 134306120 -42668020 - L1PA4 LINE L1 -1 6154 5985 4195 244 45 43 chrX 134306120 134306770 -42667370 - L1ME2 LINE L1 -5709 687 40 353 263 11 142 chrX 134306851 134307041 -42667099 - MIR3 SINE MIR -12 196 32 370 241 36 0 chrX 134307580 134307663 -42666477 + MIR SINE MIR 31 116 -146 491 244 16 8 chrX 134307679 134307806 -42666334 + MER104 DNA Tc2 1 128 -52 267 258 22 20 chrX 134309345 134309456 -42664684 + L1MC5 LINE L1 7839 8041 -1 413 343 0 0 chrX 134309865 134310008 -42664132 + MIR SINE MIR 86 228 -34 201 147 0 0 chrX 134310008 134310042 -42664098 + (GA)n Simple_repeat Simple_repeat 1 34 0 272 270 8 56 chrX 134310944 134311109 -42663031 + CT-rich Low_complexity Low_complexity 1 157 0 206 278 0 6 chrX 134311131 134311307 -42662833 + CT-rich Low_complexity Low_complexity 1 175 0 268 314 0 17 chrX 134312072 134312244 -42661896 + GA-rich Low_complexity Low_complexity 1 169 0 259 233 29 58 chrX 134312364 134312536 -42661604 + (CAGAGA)n Simple_repeat Simple_repeat 2 168 0 2050 113 28 0 chrX 134323691 134323975 -42650165 - AluSx SINE Alu -20 292 1 636 167 38 38 chrX 134324009 134324141 -42649999 + FLAM_A SINE Alu 1 132 -1 360 328 75 59 chrX 134324155 134324408 -42649732 + L1ME4a LINE L1 5629 5885 -236 467 247 109 13 chrX 134324816 134324984 -42649156 + MIR SINE MIR 2 187 -21 244 294 191 21 chrX 134325200 134325394 -42648746 + MIR SINE MIR 36 262 0 797 179 22 0 chrX 134325453 134325587 -42648553 - MER5B DNA MER1_type -3 175 39 2398 78 0 0 chrX 134325848 134326141 -42647999 - AluSc SINE Alu -16 293 1 255 184 0 0 chrX 134326454 134326503 -42647637 + FRAM/FAM SINE Alu 4 52 -114 * 291 196 0 0 chrX 134326491 134326542 -42647598 + FLAM_A SINE Alu 73 123 -10 296 320 108 43 chrX 134326858 134327151 -42646989 + L2 LINE L2 2440 2757 -557 2296 97 0 7 chrX 134327151 134327451 -42646689 + AluSx SINE Alu 1 298 -14 296 320 108 43 chrX 134327451 134327482 -42646658 + L2 LINE L2 2757 2785 -529 1906 157 0 17 chrX 134327658 134327957 -42646183 + AluJo SINE Alu 1 294 -18 366 283 87 113 chrX 134328210 134328440 -42645700 + L2 LINE L2 3044 3267 -5 549 213 0 63 chrX 134328462 134328589 -42645551 + L2 LINE L2 3195 3313 0 743 195 0 0 chrX 134328819 134328942 -42645198 + FRAM SINE Alu 18 140 -36 2296 81 19 3 chrX 134328944 134329252 -42644888 - AluSq SINE Alu 0 313 1 21 0 0 0 chrX 134329252 134329273 -42644867 + AT_rich Low_complexity Low_complexity 1 21 0 190 354 92 8 chrX 134329288 134329418 -42644722 - L2 LINE L2 -480 2834 2694 490 299 75 14 chrX 134329422 134329632 -42644508 - MIR SINE MIR -1 261 38 434 254 49 41 chrX 134330385 134330507 -42643633 + MIR SINE MIR 18 140 -122 1121 199 37 23 chrX 134331160 134331376 -42642764 - MER20 DNA MER1_type 0 219 1 2105 127 17 0 chrX 134331485 134331777 -42642363 - AluSx SINE Alu -15 297 1 1960 113 11 3 chrX 134331991 134332274 -42641866 + AluSx SINE Alu 22 306 -6 300 111 0 0 chrX 134332275 134332320 -42641820 + (GA)n Simple_repeat Simple_repeat 1 45 0 1002 115 0 28 chrX 134332322 134332504 -42641636 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 269 222 25 37 chrX 134332858 134332939 -42641201 + L1ME LINE L1 5592 5671 -450 2138 112 0 3 chrX 134333123 134333417 -42640723 + AluSx SINE Alu 7 299 -13 197 242 0 113 chrX 134334031 134334093 -42640047 - L2 LINE L2 -79 3193 3139 2407 70 0 0 chrX 134334113 134334412 -42639728 + AluY SINE Alu 2 300 -11 1662 182 20 17 chrX 134334595 134334897 -42639243 - AluJb SINE Alu -9 303 1 322 298 37 89 chrX 134334904 134335024 -42639116 + L2 LINE L2 2730 2855 -417 1711 160 31 14 chrX 134335024 134335318 -42638822 - AluJb SINE Alu -13 299 1 322 298 37 89 chrX 134335318 134335476 -42638664 + L2 LINE L2 2855 2985 -287 494 238 41 25 chrX 134335523 134335645 -42638495 + L2 LINE L2 3180 3303 -10 2325 92 0 3 chrX 134335665 134335960 -42638180 + AluSc SINE Alu 1 294 -15 17680 88 26 3 chrX 134335993 134339167 -42634973 - L1PA7 LINE L1 0 6154 2925 2832 82 27 5 chrX 134339353 134339720 -42634420 + THE1C LTR MaLR 1 375 0 732 226 63 5 chrX 134340976 134341166 -42632974 + L1ME3A LINE L1 5965 6165 -5 2056 139 79 26 chrX 134342437 134342817 -42631323 + HERVL68 LTR ERVL 2618 3017 -20 2011 213 62 58 chrX 134342833 134342901 -42631239 + MER68 LTR ERV1 2 68 -494 369 43 0 0 chrX 134342901 134342948 -42631192 + (TCTCCC)n Simple_repeat Simple_repeat 3 49 0 9182 24 0 248 chrX 134342948 134344721 -42629419 + SVA Other Other 53 1386 0 2011 213 62 58 chrX 134344721 134345204 -42628936 + MER68 LTR ERV1 67 556 -6 2768 71 44 0 chrX 134345319 134345659 -42628481 + THE1A LTR MaLR 1 355 0 1921 146 0 29 chrX 134346063 134346371 -42627769 + AluSx SINE Alu 1 299 -13 1525 136 19 91 chrX 134347421 134347607 -42626533 - AluJo SINE Alu -26 286 129 186 43 0 0 chrX 134347607 134347630 -42626510 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 1525 136 19 91 chrX 134347630 134347751 -42626389 - AluJo SINE Alu -183 129 1 1644 112 0 25 chrX 134347928 134348169 -42625971 + AluSg/x SINE Alu 76 310 0 2295 119 0 0 chrX 134348302 134348614 -42625526 - AluSx SINE Alu 0 312 1 1783 51 0 5 chrX 134348673 134348888 -42625252 + L1MA2 LINE L1 6091 6304 0 1594 174 16 10 chrX 134349425 134349736 -42624404 - MER33 DNA MER1_type 0 324 12 1932 127 3 14 chrX 134350609 134350901 -42623239 + L1MA5A LINE L1 6002 6290 -7 24 0 0 0 chrX 134350901 134350925 -42623215 + AT_rich Low_complexity Low_complexity 1 24 0 1317 240 21 4 chrX 134350977 134351256 -42622884 - AluJo SINE Alu -23 289 6 308 121 15 30 chrX 134352061 134352127 -42622013 + L1PA16 LINE L1 6102 6166 0 1874 233 26 17 chrX 134352139 134352602 -42621538 + HAL1 LINE L1 1 467 -2040 863 227 80 30 chrX 134352613 134352913 -42621227 + HAL1 LINE L1 945 1259 -1248 340 224 26 78 chrX 134352932 134353048 -42621092 - MIR SINE MIR -148 114 5 1904 151 17 0 chrX 134353161 134353453 -42620687 + AluSx SINE Alu 3 299 -13 180 262 16 33 chrX 134354344 134354405 -42619735 - MIR3 SINE MIR -3 205 146 320 265 143 32 chrX 134354414 134354603 -42619537 - L2 LINE L2 -3 3310 3101 189 247 59 35 chrX 134354703 134354788 -42619352 - MIR SINE MIR -124 138 52 498 154 13 0 chrX 134354967 134355045 -42619095 - MADE1 DNA Mariner -1 79 1 436 305 37 37 chrX 134355288 134355452 -42618688 - L2 LINE L2 0 3272 3109 2096 105 11 0 chrX 134355575 134355852 -42618288 + AluSx SINE Alu 1 280 -32 210 37 0 0 chrX 134355855 134355882 -42618258 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 857 276 0 0 chrX 134355952 134356137 -42618003 - MIR SINE MIR -4 258 74 3562 211 44 28 chrX 134356143 134356707 -42617433 + L1MB7 LINE L1 1946 2499 -3911 204 40 0 0 chrX 134356707 134356732 -42617408 + (TG)n Simple_repeat Simple_repeat 2 26 0 3562 211 44 28 chrX 134356732 134357386 -42616754 + L1MB7 LINE L1 2499 3141 -3269 802 180 0 8 chrX 134357386 134357514 -42616626 - FLAM_A SINE Alu -6 127 1 3562 211 44 28 chrX 134357514 134358315 -42615825 + L1MB7 LINE L1 3141 5673 -737 43272 52 5 4 chrX 134360799 134366941 -42607199 + L1PA5 LINE L1 1 6154 0 2349 85 7 3 chrX 134367291 134367596 -42606544 + AluY SINE Alu 1 306 -5 221 250 0 0 chrX 134367979 134368043 -42606097 + T-rich Low_complexity Low_complexity 1 64 0 2911 170 37 43 chrX 134368625 134368905 -42605235 + L1MB7 LINE L1 5674 5954 -466 1931 117 62 0 chrX 134368905 134369179 -42604961 + AluSg SINE Alu 1 291 -19 2911 170 37 43 chrX 134369179 134369499 -42604641 + L1MB7 LINE L1 5954 6270 -150 1688 74 46 0 chrX 134369499 134369715 -42604425 - L1PA10 LINE L1 -2 6166 5941 783 149 7 7 chrX 134369717 134369858 -42604282 + L1MB7 LINE L1 6261 6401 -19 235 221 13 13 chrX 134370076 134370153 -42603987 + GA-rich Low_complexity Low_complexity 2 78 0 2338 95 3 0 chrX 134370308 134370604 -42603536 + AluSq SINE Alu 1 297 -16 296 262 129 77 chrX 134370830 134370970 -42603170 + L1ME4a LINE L1 5654 5785 -336 1108 233 4 48 chrX 134370970 134371025 -42603115 + MIR SINE MIR 4 60 -202 1809 161 0 16 chrX 134371025 134371329 -42602811 - AluJb SINE Alu -13 299 1 1108 233 4 48 chrX 134371329 134371543 -42602597 + MIR SINE MIR 60 261 -1 296 262 129 77 chrX 134371543 134371845 -42602295 + L1ME4a LINE L1 5785 6119 -2 1703 260 189 37 chrX 134371873 134372775 -42601365 + HAL1 LINE L1 13 1055 -1452 1933 149 13 7 chrX 134372775 134373083 -42601057 + AluSx SINE Alu 1 310 -2 657 38 0 0 chrX 134373094 134373174 -42600966 + (GGAA)n Simple_repeat Simple_repeat 4 83 0 301 227 118 17 chrX 134373270 134373336 -42600804 + L1ME1 LINE L1 3669 3727 -2419 1906 193 11 82 chrX 134373336 134373786 -42600354 - MER47B DNA MER2_type 0 418 1 301 227 118 17 chrX 134373786 134373838 -42600302 + L1ME1 LINE L1 3727 3799 -2347 5976 199 50 51 chrX 134373933 134374900 -42599240 + L1ME1 LINE L1 3791 4757 -1409 2404 94 0 0 chrX 134374900 134375197 -42598943 + AluSx SINE Alu 3 299 -13 5976 199 50 51 chrX 134375197 134376013 -42598127 + L1ME1 LINE L1 4757 5572 -594 2155 102 48 0 chrX 134376013 134376307 -42597833 - AluSq SINE Alu -5 308 1 5976 199 50 51 chrX 134376307 134376895 -42597245 + L1ME1 LINE L1 5572 6159 -7 24 53 0 0 chrX 134376949 134376987 -42597153 + AT_rich Low_complexity Low_complexity 1 38 0 206 355 0 0 chrX 134377163 134377225 -42596915 + L2 LINE L2 2989 3050 -222 2490 82 0 0 chrX 134377728 134378033 -42596107 + AluSx SINE Alu 1 305 -7 2334 79 0 20 chrX 134378165 134378468 -42595672 + AluY SINE Alu 1 297 -14 1747 183 7 3 chrX 134378472 134378767 -42595373 + AluJo SINE Alu 1 296 -16 613 139 213 194 chrX 134379257 134379624 -42594516 + MLT1A2 LTR MaLR 1 374 0 189 317 12 98 chrX 134379688 134379852 -42594288 + MIR3 SINE MIR 17 166 -42 2122 131 0 3 chrX 134380096 134380394 -42593746 + AluSx SINE Alu 1 297 -15 248 309 0 0 chrX 134383834 134383902 -42590238 + GA-rich Low_complexity Low_complexity 1 68 0 828 169 0 0 chrX 134384004 134384140 -42590000 - AluJb SINE Alu -176 136 1 25 31 0 0 chrX 134385046 134385078 -42589062 + AT_rich Low_complexity Low_complexity 1 32 0 2221 117 10 3 chrX 134385373 134385682 -42588458 - AluSx SINE Alu -1 311 1 475 236 129 18 chrX 134385868 134386093 -42588047 + L1MC4 LINE L1 5671 5920 -1888 1845 192 0 0 chrX 134386443 134386751 -42587389 - AluJb SINE Alu -4 308 1 908 192 0 0 chrX 134386790 134386946 -42587194 + AluJb SINE Alu 145 300 -12 2321 85 3 0 chrX 134387098 134387391 -42586749 + AluSp SINE Alu 1 294 -19 1220 147 189 23 chrX 134387688 134387947 -42586193 - AluJb SINE Alu 0 302 1 26 30 0 0 chrX 134387947 134387980 -42586160 + AT_rich Low_complexity Low_complexity 1 33 0 1326 243 183 22 chrX 134388031 134388630 -42585510 + L1MC4 LINE L1 7359 7785 0 1973 139 3 0 chrX 134389351 134389652 -42584488 + AluJb SINE Alu 1 302 -10 1729 214 103 75 chrX 134389800 134389951 -42584189 + MER20B DNA MER1_type 129 274 -509 1888 142 21 0 chrX 134389951 134390240 -42583900 - AluJb SINE Alu -17 295 1 1729 214 103 75 chrX 134390240 134390700 -42583440 + MER20B DNA MER1_type 274 757 -26 2112 92 7 33 chrX 134390700 134391004 -42583136 + AluSg SINE Alu 1 296 -14 254 216 20 0 chrX 134391057 134391108 -42583032 - MIR3 SINE MIR -48 160 109 405 164 0 0 chrX 134391168 134391241 -42582899 + (TA)n Simple_repeat Simple_repeat 1 73 0 245 211 11 63 chrX 134391244 134391339 -42582801 + L1MC4 LINE L1 6614 6703 -1339 251 152 0 0 chrX 134391345 134391391 -42582749 - LTR66 LTR ERVL -171 439 394 1743 118 0 0 chrX 134391393 134391631 -42582509 - AluSx SINE Alu -14 298 61 2294 97 3 0 chrX 134391781 134392080 -42582060 + AluSq SINE Alu 1 300 -13 2186 105 14 0 chrX 134392395 134392689 -42581451 + AluSx SINE Alu 1 298 -14 2321 116 0 0 chrX 134392692 134393003 -42581137 + AluSx SINE Alu 2 312 0 1189 132 0 0 chrX 134393336 134393503 -42580637 + AluSg/x SINE Alu 135 301 -11 557 179 17 0 chrX 134393666 134393781 -42580359 + MER33 DNA MER1_type 1 106 -97 914 219 35 65 chrX 134393799 134393966 -42580174 + L1MC4a LINE L1 6345 6503 -1305 2915 6 0 0 chrX 134393966 134394277 -42579863 + AluYa5 SINE Alu 1 311 0 914 219 35 65 chrX 134394277 134394369 -42579771 + L1MC4a LINE L1 6503 6596 -1212 358 257 34 27 chrX 134394447 134394595 -42579545 - L1MC4 LINE L1 -749 7293 7145 2927 6 0 0 chrX 134394674 134394987 -42579153 - AluYb8 SINE Alu -5 313 1 801 188 0 0 chrX 134395181 134395309 -42578831 + AluSq/x SINE Alu 1 128 -184 1682 139 10 21 chrX 134395332 134395620 -42578520 + AluSx SINE Alu 25 309 -3 293 269 31 56 chrX 134395643 134395803 -42578337 + MER103 DNA DNA 4 159 -7 27 29 0 0 chrX 134395849 134395883 -42578257 + AT_rich Low_complexity Low_complexity 1 34 0 695 246 87 10 chrX 134396651 134396846 -42577294 - MIR SINE MIR -17 245 36 2395 91 0 0 chrX 134397028 134397326 -42576814 - AluSx SINE Alu -14 298 1 2228 113 7 0 chrX 134397617 134397919 -42576221 - AluSx SINE Alu -8 304 1 480 292 35 7 chrX 134398186 134398330 -42575810 + MIR SINE MIR 2 149 -113 2135 113 3 20 chrX 134398602 134398903 -42575237 + AluSx SINE Alu 1 296 -16 270 0 0 0 chrX 134398903 134398918 -42575222 + (CA)n Simple_repeat Simple_repeat 1 45 0 270 0 0 0 chrX 134398918 134398948 -42575192 + (CA)n Simple_repeat Simple_repeat 2 31 0 220 220 20 0 chrX 134399718 134399768 -42574372 + L2 LINE L2 3222 3272 0 23 33 0 0 chrX 134399788 134399818 -42574322 + AT_rich Low_complexity Low_complexity 1 30 0 2243 98 0 0 chrX 134399832 134400118 -42574022 - AluSx SINE Alu -26 286 1 2246 253 136 32 chrX 134400439 134400888 -42573252 - L2 LINE L2 -508 2806 2405 2007 128 0 71 chrX 134400888 134401224 -42572916 + AluSx SINE Alu 1 312 0 2246 253 136 32 chrX 134401224 134401512 -42572628 - L2 LINE L2 -909 2405 1985 2008 139 0 13 chrX 134401512 134401821 -42572319 + AluJo SINE Alu 2 306 -6 2246 253 136 32 chrX 134401821 134401842 -42572298 - L2 LINE L2 -1329 1985 1968 2308 80 0 32 chrX 134402470 134402782 -42571358 - AluSx SINE Alu -9 303 2 342 270 146 0 chrX 134402973 134403062 -42571078 - MER5A DNA MER1_type -86 103 2 2218 109 10 0 chrX 134403068 134403361 -42570779 + AluSp SINE Alu 1 296 -17 2110 182 36 65 chrX 134403474 134403670 -42570470 + MLT1C LTR MaLR 1 201 -266 2196 128 3 0 chrX 134403670 134403974 -42570166 + AluSq SINE Alu 1 305 -8 2110 182 36 65 chrX 134403974 134404188 -42569952 + MLT1C LTR MaLR 201 398 -69 2380 93 0 0 chrX 134404188 134404498 -42569642 - AluSg SINE Alu 0 310 1 2110 182 36 65 chrX 134404498 134404564 -42569576 + MLT1C LTR MaLR 398 464 -3 1715 156 4 11 chrX 134404592 134404868 -42569272 + AluJo SINE Alu 1 274 -38 498 17 0 0 chrX 134404870 134404929 -42569211 + (TC)n Simple_repeat Simple_repeat 2 60 0 333 0 0 0 chrX 134404928 134404965 -42569175 + (TG)n Simple_repeat Simple_repeat 2 38 0 * 207 0 0 0 chrX 134404964 134404987 -42569153 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 442 266 40 70 chrX 134405003 134405068 -42569072 + MIR SINE MIR 69 134 -128 2507 68 7 0 chrX 134405068 134405376 -42568764 - AluY SINE Alu 0 311 2 442 266 40 70 chrX 134405376 134405509 -42568631 + MIR SINE MIR 134 261 -1 540 94 375 0 chrX 134405544 134405640 -42568500 + AluSg1 SINE Alu 1 132 -177 2207 118 0 0 chrX 134405662 134405958 -42568182 + AluSx SINE Alu 2 297 -15 312 250 56 9 chrX 134406168 134406276 -42567864 + L1MC/D LINE L1 5697 5809 -1999 589 298 49 57 chrX 134406329 134406381 -42567759 + MIR SINE MIR 3 54 -208 2085 115 7 17 chrX 134406381 134406677 -42567463 + AluSx SINE Alu 1 293 -19 2157 119 3 10 chrX 134406677 134406987 -42567153 + AluSg SINE Alu 1 309 -1 589 298 49 57 chrX 134406987 134407178 -42566962 + MIR SINE MIR 52 245 -17 1774 207 41 46 chrX 134407498 134407909 -42566231 + LTR2 LTR ERV1 41 449 0 3027 152 3 120 chrX 134407909 134408599 -42565541 + HERVE LTR ERV1 1 609 -7204 4046 211 25 9 chrX 134408600 134409349 -42564791 + HERVE LTR ERV1 721 1481 -6945 1966 111 103 95 chrX 134409320 134409709 -42564431 + HERVE LTR ERV1 3930 4321 -3492 * 1848 225 55 3 chrX 134409718 134410065 -42564075 + HERV3 LTR ERV1 1721 2085 -6341 1985 254 8 0 chrX 134410313 134410711 -42563429 + HERV3 LTR ERV1 2069 2469 -5957 509 244 32 24 chrX 134410710 134410833 -42563307 + HERV3 LTR ERV1 3701 3824 -4602 * 6306 207 29 11 chrX 134410805 134411964 -42562176 + HERV3 LTR ERV1 5135 6313 -2113 2005 209 9 31 chrX 134412020 134412755 -42561385 + HERV3 LTR ERV1 7012 7811 -2 1650 202 57 49 chrX 134412830 134413236 -42560904 + LTR2 LTR ERV1 41 449 0 351 234 0 0 chrX 134413266 134413390 -42560750 + (TA)n Simple_repeat Simple_repeat 1 124 0 2298 106 0 0 chrX 134413394 134413687 -42560453 - AluSq SINE Alu -20 293 1 1139 81 0 0 chrX 134413687 134413823 -42560317 - AluSq/x SINE Alu -176 136 1 1024 155 17 39 chrX 134413943 134414124 -42560016 + AluJb SINE Alu 136 312 0 2367 61 7 3 chrX 134414132 134414426 -42559714 + AluY SINE Alu 1 295 -16 1535 150 117 4 chrX 134414456 134414722 -42559418 + AluJb SINE Alu 1 296 -16 598 312 59 80 chrX 134414941 134415401 -42558739 + L1MEd LINE L1 48 483 -5636 1905 129 56 0 chrX 134415401 134415688 -42558452 + AluSx SINE Alu 1 303 -9 598 312 59 80 chrX 134415688 134416080 -42558060 + L1MEd LINE L1 483 882 -5237 2256 113 3 3 chrX 134416085 134416396 -42557744 + AluSx SINE Alu 1 311 -1 306 270 196 9 chrX 134416396 134416626 -42557514 + L1MEd LINE L1 984 1256 -4863 2194 109 13 19 chrX 134416720 134417033 -42557107 + AluSx SINE Alu 1 311 -1 2180 123 0 0 chrX 134417044 134417337 -42556803 + AluSg SINE Alu 1 293 -17 2246 109 7 0 chrX 134417445 134417748 -42556392 + AluSp SINE Alu 1 305 -8 459 129 64 32 chrX 134417750 134417845 -42556295 + L1MA8 LINE L1 6194 6291 0 2054 124 0 0 chrX 134417865 134418148 -42555992 + AluSq SINE Alu 1 283 -30 235 0 0 0 chrX 134418148 134418174 -42555966 + (TAAA)n Simple_repeat Simple_repeat 3 112 0 1244 226 38 41 chrX 134418208 134418576 -42555564 + L1MEc LINE L1 36 402 -5994 798 199 41 6 chrX 134418609 134418780 -42555360 + LTR41 LTR ERVL 1 177 -596 561 192 135 26 chrX 134418814 134419007 -42555133 + L1MC5 LINE L1 7167 7380 -581 1830 149 10 7 chrX 134419125 134419426 -42554714 - AluJo SINE Alu -10 302 1 2028 131 3 0 chrX 134419507 134419804 -42554336 + AluSx SINE Alu 1 298 -14 292 303 71 50 chrX 134419870 134420068 -42554072 + L1ME3A LINE L1 5962 6163 -7 421 179 0 0 chrX 134420157 134420224 -42553916 + FLAM SINE Alu 56 122 -21 465 229 21 0 chrX 134420295 134420391 -42553749 - MIR SINE MIR 0 262 165 902 105 161 0 chrX 134420408 134420551 -42553589 - AluSc SINE Alu -20 289 124 204 149 213 0 chrX 134420558 134420605 -42553535 - MIR SINE MIR -107 155 99 21 53 0 35 chrX 134420663 134420682 -42553458 + AT_rich Low_complexity Low_complexity 1 19 -36 1963 140 0 7 chrX 134420682 134420989 -42553151 + AluSx SINE Alu 1 305 -7 21 53 0 35 chrX 134420989 134421026 -42553114 + AT_rich Low_complexity Low_complexity 19 55 0 22 0 0 0 chrX 134421124 134421146 -42552994 + AT_rich Low_complexity Low_complexity 1 22 0 8161 124 156 29 chrX 134421324 134422831 -42551309 - pTR5 LTR ERV1 0 2438 741 2344 58 10 0 chrX 134422968 134423263 -42550877 + AluY SINE Alu 1 298 -13 1845 140 0 22 chrX 134423473 134423787 -42550353 + AluSx SINE Alu 1 307 -5 264 258 65 0 chrX 134423943 134424005 -42550135 - L1MC/D LINE L1 -2143 5665 5600 204 40 0 0 chrX 134424018 134424043 -42550097 + (TA)n Simple_repeat Simple_repeat 2 26 0 463 303 61 21 chrX 134424104 134424244 -42549896 - L1MC/D LINE L1 -526 5595 5462 2172 104 0 0 chrX 134424244 134424541 -42549599 + AluSg SINE Alu 1 297 -13 463 303 61 21 chrX 134424541 134424701 -42549439 - L1MC/D LINE L1 -659 5462 5282 381 285 123 98 chrX 134424745 134425077 -42549063 - L1MC/D LINE L1 -913 5233 4911 2108 88 7 27 chrX 134425077 134425371 -42548769 + AluSq SINE Alu 5 292 -21 2106 83 0 38 chrX 134425375 134425688 -42548452 + AluY SINE Alu 5 305 -6 381 285 123 98 chrX 134425688 134425799 -42548341 - L1MC/D LINE L1 -1237 4909 4774 1037 116 0 0 chrX 134425864 134426011 -42548129 - AluSg/x SINE Alu -3 307 161 1033 138 63 0 chrX 134426013 134426172 -42547968 - Charlie1 DNA MER1_type -2586 175 7 1955 114 34 7 chrX 134426222 134426520 -42547620 - AluSx SINE Alu -6 306 1 21 36 0 0 chrX 134426614 134426642 -42547498 + AT_rich Low_complexity Low_complexity 1 28 0 1900 114 4 0 chrX 134426642 134426914 -42547226 + AluJb SINE Alu 1 273 -39 936 157 10 3 chrX 134426915 134427209 -42546931 + GA-rich Low_complexity Low_complexity 1 296 0 1767 114 9 67 chrX 134427276 134427591 -42546549 - AluSc SINE Alu -12 297 1 267 294 0 0 chrX 134427912 134427980 -42546160 - MER113 DNA MER1_type? 0 521 454 1982 134 0 7 chrX 134428093 134428392 -42545748 - AluSx SINE Alu -15 297 1 1888 126 33 7 chrX 134428485 134428787 -42545353 + AluSg SINE Alu 1 310 0 1243 106 67 0 chrX 134428807 134429015 -42545125 - L1P5 LINE L1 -679 5475 5254 2440 47 7 0 chrX 134429194 134429492 -42544648 - AluY SINE Alu -11 300 1 2075 112 0 7 chrX 134429765 134430078 -42544062 + AluSq SINE Alu 1 311 0 286 82 33 66 chrX 134430288 134430349 -42543791 - Alu SINE Alu 0 302 244 1095 54 34 0 chrX 134430494 134430642 -42543498 - AluSp SINE Alu -160 153 1 1174 241 128 20 chrX 134430661 134430733 -42543407 + L1M4 LINE L1 3782 3845 -2301 2027 123 3 3 chrX 134430733 134431034 -42543106 + AluSx SINE Alu 1 301 -11 1174 241 128 20 chrX 134431034 134431359 -42542781 + L1M4 LINE L1 3845 4222 -1924 989 185 55 65 chrX 134432799 134432973 -42541167 - MER33 DNA MER1_type -2262 323 149 2364 59 3 3 chrX 134432973 134433280 -42540860 - AluSg SINE Alu -3 307 1 2211 76 10 0 chrX 134433290 134433580 -42540560 - AluSx SINE Alu -13 299 7 989 185 55 65 chrX 134433580 134433686 -42540454 - MER33 DNA MER1_type -2445 140 35 180 0 0 0 chrX 134433948 134433968 -42540172 + (CGGGG)n Simple_repeat Simple_repeat 3 22 0 256 307 13 29 chrX 134434585 134434736 -42539404 + CT-rich Low_complexity Low_complexity 1 148 0 410 251 11 64 chrX 134434783 134434970 -42539170 + CT-rich Low_complexity Low_complexity 3 179 0 482 287 67 13 chrX 134435242 134435392 -42538748 + MIR SINE MIR 104 261 -1 455 204 29 23 chrX 134435984 134436156 -42537984 + CT-rich Low_complexity Low_complexity 1 173 0 2045 116 6 41 chrX 134436156 134436476 -42537664 - AluSx SINE Alu -2 310 2 319 151 0 0 chrX 134436476 134436529 -42537611 + MER4A LTR ERV1 612 664 0 542 209 8 122 chrX 134436529 134436690 -42537450 - L1M4 LINE L1 -1132 5014 4891 1439 115 119 45 chrX 134436690 134436799 -42537341 - AluSx SINE Alu -22 290 191 1580 102 74 126 chrX 134436799 134437124 -42537016 - AluSx SINE Alu -4 308 1 1439 115 119 45 chrX 134437124 134437283 -42536857 - AluSx SINE Alu -121 191 2 542 209 8 122 chrX 134437283 134437375 -42536765 - L1M4 LINE L1 -1255 4891 4790 207 0 0 0 chrX 134437656 134437679 -42536461 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2222 104 3 0 chrX 134437684 134437993 -42536147 + AluSp SINE Alu 1 310 -3 623 162 0 8 chrX 134438092 134438209 -42535931 - L1MB8 LINE L1 -5 6173 6058 1822 139 20 7 chrX 134438886 134439181 -42534959 + AluSx SINE Alu 1 299 -13 975 161 35 0 chrX 134439220 134439394 -42534746 - AluJo SINE Alu -11 301 122 2118 107 3 10 chrX 134439395 134439705 -42534435 - AluSg SINE Alu -2 308 1 665 124 0 35 chrX 134439736 134439849 -42534291 - FLAM_C SINE Alu 0 143 35 1671 141 0 31 chrX 134439882 134440173 -42533967 - AluSx SINE Alu -1 311 30 206 397 0 0 chrX 134440205 134440273 -42533867 + polypyrimidine Low_complexity Low_complexity 2 69 0 203 86 0 29 chrX 134440276 134440311 -42533829 + (TCC)n Simple_repeat Simple_repeat 1 34 0 964 152 17 39 chrX 134440513 134440691 -42533449 + AluJb SINE Alu 139 312 0 2268 61 7 3 chrX 134440699 134440993 -42533147 + AluY SINE Alu 1 295 -16 1452 150 117 4 chrX 134441023 134441289 -42532851 + AluJb SINE Alu 1 296 -16 581 315 57 78 chrX 134441508 134441968 -42532172 + L1MEd LINE L1 48 483 -5636 1804 132 56 0 chrX 134441968 134442255 -42531885 + AluSx SINE Alu 1 303 -9 581 315 57 78 chrX 134442255 134442647 -42531493 + L1MEd LINE L1 483 882 -5237 2152 113 3 3 chrX 134442652 134442963 -42531177 + AluSx SINE Alu 1 311 -1 283 270 196 9 chrX 134442963 134443193 -42530947 + L1MEd LINE L1 984 1256 -4863 2071 109 13 19 chrX 134443287 134443600 -42530540 + AluSx SINE Alu 1 311 -1 2069 125 0 0 chrX 134443611 134443907 -42530233 + AluSg SINE Alu 1 296 -14 2133 109 7 0 chrX 134444012 134444315 -42529825 + AluSp SINE Alu 1 305 -8 439 137 63 32 chrX 134444317 134444412 -42529728 + L1MA8 LINE L1 6194 6291 0 1961 124 0 0 chrX 134444432 134444741 -42529399 + AluSq SINE Alu 1 309 0 1244 226 38 41 chrX 134444775 134445143 -42528997 + L1MEc LINE L1 36 402 -5994 798 199 41 6 chrX 134445176 134445347 -42528793 + LTR41 LTR ERVL 1 177 -596 561 192 135 26 chrX 134445381 134445574 -42528566 + L1MC5 LINE L1 7167 7380 -581 1723 157 17 7 chrX 134445692 134445991 -42528149 - AluJo SINE Alu -10 302 1 1042 103 0 0 chrX 134446072 134446208 -42527932 + AluSq/x SINE Alu 1 136 -177 2193 106 0 0 chrX 134446208 134446501 -42527639 + AluSq SINE Alu 1 293 -20 304 254 0 0 chrX 134446508 134446571 -42527569 + L1MC4 LINE L1 6640 6702 -1340 183 175 0 0 chrX 134446572 134446629 -42527511 + (TA)n Simple_repeat Simple_repeat 2 58 0 1652 202 57 49 chrX 134446659 134447065 -42527075 - LTR2 LTR ERV1 0 449 41 1978 202 15 37 chrX 134447140 134447876 -42526264 - HERVE LTR ERV1 -2 7811 7012 6297 206 29 11 chrX 134447931 134449090 -42525050 - HERVE LTR ERV1 -2113 6313 5135 511 244 32 24 chrX 134449062 134449185 -42524955 - HERVE LTR ERV1 -4602 3824 3701 * 2000 254 8 0 chrX 134449184 134449582 -42524558 - HERVE LTR ERV1 -5957 2469 2069 1839 225 55 3 chrX 134449830 134450177 -42523963 - HERVE LTR ERV1 -6341 2085 1721 1980 111 103 95 chrX 134450186 134450575 -42523565 - HERVE LTR ERV1 -3492 4321 3930 * 4063 211 25 9 chrX 134450546 134451295 -42522845 - HERVE LTR ERV1 -6945 1481 721 925 181 153 39 chrX 134451296 134451550 -42522590 - HERVE LTR ERV1 -6284 612 330 3034 109 2 16 chrX 134451554 134451986 -42522154 - HERVE LTR ERV1 -6470 426 1 1768 207 41 46 chrX 134451986 134452397 -42521743 - LTR2 LTR ERV1 0 449 41 617 302 53 61 chrX 134452717 134452908 -42521232 - MIR SINE MIR -17 245 54 1909 124 3 19 chrX 134452908 134453222 -42520918 - AluSg SINE Alu -1 309 1 1980 115 7 17 chrX 134453222 134453517 -42520623 - AluSx SINE Alu -19 293 1 617 302 53 61 chrX 134453517 134453569 -42520571 - MIR SINE MIR -206 56 3 293 250 56 9 chrX 134453622 134453730 -42520410 - L1MC/D LINE L1 -1999 6069 5957 1015 83 14 7 chrX 134453940 134454084 -42520056 - AluSp/q SINE Alu -15 298 154 214 77 0 96 chrX 134454205 134454257 -42519883 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 2321 197 17 51 chrX 134454257 134454478 -42519662 - L1MC/D LINE L1 -644 5975 5748 2093 138 35 19 chrX 134454478 134454847 -42519293 + THE1C LTR MaLR 1 375 0 2321 197 17 51 chrX 134454847 134455018 -42519122 - L1MC/D LINE L1 -871 5748 5573 2360 91 0 0 chrX 134455018 134455325 -42518815 - AluSx SINE Alu -5 307 1 2321 197 17 51 chrX 134455325 134455819 -42518321 - L1MC/D LINE L1 -1046 5573 5123 1971 122 24 0 chrX 134455819 134456114 -42518026 + AluSq SINE Alu 1 302 -11 2321 197 17 51 chrX 134456114 134456340 -42517800 - L1MC/D LINE L1 -1496 5123 4891 1946 126 7 0 chrX 134456411 134456688 -42517452 - AluSx SINE Alu -33 279 1 448 198 0 0 chrX 134456690 134456776 -42517364 - L1MC/D LINE L1 -2260 4146 4061 2393 189 28 69 chrX 134456782 134457321 -42516819 - MLT2B3 LTR ERVL 0 554 38 192 40 0 0 chrX 134457469 134457494 -42516646 + (CA)n Simple_repeat Simple_repeat 2 26 0 1867 134 7 3 chrX 134457504 134457788 -42516352 - AluSx SINE Alu -27 285 1 1030 238 27 23 chrX 134457791 134458090 -42516050 - L1MC/D LINE L1 -2391 4015 3716 2291 70 3 16 chrX 134458104 134458420 -42515720 - AluSp SINE Alu -1 312 1 546 149 23 0 chrX 134458423 134458510 -42515630 - AluJ/FLAM SINE Alu -223 89 1 616 254 35 19 chrX 134458513 134458769 -42515371 - L1MC/D LINE L1 -2697 3709 3450 783 77 0 0 chrX 134458770 134458874 -42515266 + AluSc SINE Alu 206 309 0 354 202 44 70 chrX 134458905 134458918 -42515222 - L1MC/D LINE L1 -2925 3481 3469 2539 154 60 14 chrX 134458918 134459419 -42514721 - L1MA4 LINE L1 -4 6296 5773 354 202 44 70 chrX 134459419 134459477 -42514663 - L1MC/D LINE L1 -2937 3469 3412 2215 98 0 0 chrX 134459477 134459774 -42514366 - AluSx SINE Alu -15 297 1 354 202 44 70 chrX 134459774 134459815 -42514325 - L1MC/D LINE L1 -2994 3412 3371 818 158 7 22 chrX 134459817 134459956 -42514184 - FLAM_C SINE Alu -4 139 3 371 146 8 123 chrX 134459958 134460088 -42514052 - L1MC/D LINE L1 -3037 3369 3255 2223 200 47 12 chrX 134460090 134460584 -42513556 + L1MB7 LINE L1 5542 6052 -132 953 158 0 29 chrX 134460584 134460755 -42513385 - FRAM SINE Alu -13 163 1 400 104 9 170 chrX 134460755 134460861 -42513279 + L1MB7 LINE L1 6051 6139 -45 851 142 64 0 chrX 134460862 134461003 -42513137 + AluJo SINE Alu 1 150 -162 3391 207 51 63 chrX 134461004 134461062 -42513078 - L1MDb LINE L1 -3310 3096 3039 1714 210 127 60 chrX 134461062 134461256 -42512884 + MLT1E2 LTR MaLR 1 181 -445 2094 99 3 0 chrX 134461256 134461549 -42512591 + AluSq SINE Alu 2 295 -18 1714 210 127 60 chrX 134461549 134461799 -42512341 + MLT1E2 LTR MaLR 181 496 -130 2132 101 7 0 chrX 134461799 134462095 -42512045 + AluSp SINE Alu 1 298 -15 1714 210 127 60 chrX 134462095 134462234 -42511906 + MLT1E2 LTR MaLR 496 624 -2 3391 207 51 63 chrX 134462234 134462943 -42511197 - L1MDb LINE L1 -3367 3039 2323 2289 96 0 0 chrX 134462943 134463255 -42510885 - AluSx SINE Alu 0 312 1 3391 207 51 63 chrX 134463255 134464033 -42510107 - L1MDb LINE L1 -4083 2323 1537 2233 87 3 0 chrX 134464033 134464331 -42509809 + AluSx SINE Alu 1 299 -13 3391 207 51 63 chrX 134464331 134464554 -42509586 - L1MDb LINE L1 -4869 1537 1349 1902 69 0 4 chrX 134464554 134464800 -42509340 - AluY SINE Alu -66 245 1 3391 207 51 63 chrX 134464800 134464835 -42509305 - L1MDb LINE L1 -5057 1349 1315 2181 107 0 0 chrX 134464897 134465197 -42508943 - AluSg SINE Alu -10 300 1 2186 126 0 0 chrX 134465342 134465652 -42508488 - AluSx SINE Alu -2 310 1 2306 90 0 3 chrX 134466862 134467173 -42506967 + AluSq SINE Alu 1 310 -3 854 89 24 0 chrX 134467285 134467408 -42506732 - AluSq/x SINE Alu -186 126 1 386 306 35 28 chrX 134467514 134467658 -42506482 - MIR SINE MIR -71 191 47 2126 106 0 3 chrX 134467664 134467965 -42506175 + AluSg SINE Alu 1 300 -10 2430 138 90 36 chrX 134467985 134468092 -42506048 - LTR12 LTR ERV1 -215 1800 1700 2123 86 35 14 chrX 134468092 134468382 -42505758 - AluY SINE Alu -15 296 1 2430 138 90 36 chrX 134468382 134468744 -42505396 - LTR12 LTR ERV1 -315 1700 55 296 211 0 0 chrX 134468744 134468796 -42505344 - LTR30 LTR ERV1 -670 52 1 2287 115 0 0 chrX 134468922 134469218 -42504922 + AluSx SINE Alu 1 296 -16 2385 103 0 3 chrX 134469408 134469719 -42504421 + AluSx SINE Alu 1 310 -2 1957 133 41 3 chrX 134469730 134470024 -42504116 + AluSx SINE Alu 1 305 -7 822 101 23 8 chrX 134470454 134470583 -42503557 + L1MD3 LINE L1 7720 7850 -145 1965 111 0 7 chrX 134470583 134470853 -42503287 - AluSx SINE Alu -44 268 1 1200 54 0 13 chrX 134470913 134471062 -42503078 + AluSg/x SINE Alu 162 308 -2 2197 123 0 10 chrX 134471197 134471499 -42502641 + AluSx SINE Alu 1 299 -13 2263 106 0 0 chrX 134471499 134471791 -42502349 + AluSx SINE Alu 1 292 -20 2609 194 42 61 chrX 134471791 134472015 -42502125 + L1MB8 LINE L1 4764 4991 -1193 2197 123 0 0 chrX 134472015 134472323 -42501817 + AluSx SINE Alu 1 308 -4 2609 194 42 61 chrX 134472323 134472523 -42501617 + L1MB8 LINE L1 4991 5193 -991 2337 95 0 3 chrX 134472523 134472827 -42501313 + AluSq SINE Alu 3 305 -8 2419 68 0 37 chrX 134472831 134473154 -42500986 + AluY SINE Alu 1 311 0 2609 194 42 61 chrX 134473154 134473748 -42500392 + L1MB8 LINE L1 5196 5800 -384 2911 47 0 0 chrX 134473748 134474092 -42500048 - LTR14A LTR ERVK 0 344 1 2609 194 42 61 chrX 134474092 134474207 -42499933 + L1MB8 LINE L1 5800 5875 -309 2148 113 13 13 chrX 134474207 134474516 -42499624 + AluSx SINE Alu 1 309 -3 2609 194 42 61 chrX 134474516 134474576 -42499564 + L1MB8 LINE L1 5875 5935 -249 2335 102 0 6 chrX 134474576 134474891 -42499249 + AluSq SINE Alu 1 313 0 738 173 0 16 chrX 134474904 134475031 -42499109 + FLAM_A SINE Alu 6 130 -12 630 247 49 49 chrX 134475031 134475133 -42499007 + L1MB8 LINE L1 5931 6032 -146 328 95 270 0 chrX 134475133 134475172 -42498968 + MADE1 DNA Mariner 1 28 -52 1935 149 0 0 chrX 134475172 134475454 -42498686 - AluSx SINE Alu -20 292 11 1620 140 0 0 chrX 134475453 134475675 -42498465 - AluSx SINE Alu -90 222 1 * 328 95 270 0 chrX 134475454 134475698 -42498442 + MADE1 DNA Mariner 28 80 0 630 247 49 49 chrX 134475698 134475842 -42498298 + L1MB8 LINE L1 6031 6177 -1 213 39 0 0 chrX 134475999 134476025 -42498115 + (A)n Simple_repeat Simple_repeat 1 26 0 858 130 12 50 chrX 134476207 134476368 -42497772 + MLT1B LTR MaLR 1 155 -235 1227 128 22 0 chrX 134476371 134476550 -42497590 - AluJb SINE Alu 0 312 130 380 331 0 0 chrX 134476567 134476709 -42497431 - L2 LINE L2 -1390 1924 1783 902 159 0 26 chrX 134476801 134476952 -42497188 + AluJo SINE Alu 5 151 -161 38 22 0 0 chrX 134476975 134477020 -42497120 + AT_rich Low_complexity Low_complexity 1 45 0 215 169 46 15 chrX 134477152 134477217 -42496923 + (TA)n Simple_repeat Simple_repeat 2 68 0 331 291 0 8 chrX 134477247 134477364 -42496776 - L1MC/D LINE L1 -1992 5816 5701 2249 102 24 0 chrX 134477469 134477764 -42496376 + AluSq SINE Alu 1 302 -11 731 177 15 8 chrX 134477777 134477907 -42496233 + FLAM_A SINE Alu 1 131 -2 248 0 31 0 chrX 134477951 134477983 -42496157 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 2034 108 0 31 chrX 134477984 134478272 -42495868 - AluSx SINE Alu -33 279 1 1833 138 17 0 chrX 134478273 134478564 -42495576 - L1MB1 LINE L1 -67 6101 5806 726 342 20 59 chrX 134478564 134478773 -42495367 - L2 LINE L2 -1523 1791 1575 2009 117 53 0 chrX 134478773 134479055 -42495085 + AluSg SINE Alu 1 297 -13 726 342 20 59 chrX 134479055 134479131 -42495009 - L2 LINE L2 -1739 1575 1498 793 159 25 90 chrX 134479131 134479332 -42494808 - MER5A DNA MER1_type 0 189 2 726 342 20 59 chrX 134479332 134479642 -42494498 - L2 LINE L2 -1816 1498 1218 190 264 111 0 chrX 134479760 134479832 -42494308 + L2 LINE L2 2429 2508 -806 21 0 0 0 chrX 134479832 134479853 -42494287 + AT_rich Low_complexity Low_complexity 1 21 0 834 115 18 0 chrX 134479853 134479966 -42494174 - FLAM_C SINE Alu -28 115 1 751 233 108 5 chrX 134479981 134480204 -42493936 - MIR SINE MIR -2 260 15 1029 334 32 41 chrX 134480216 134480414 -42493726 + L2 LINE L2 2516 2714 -599 2368 94 0 0 chrX 134480414 134480713 -42493427 + AluSx SINE Alu 1 299 -13 1029 334 32 41 chrX 134480713 134481318 -42492822 + L2 LINE L2 2714 3309 -4 651 313 8 12 chrX 134481333 134481592 -42492548 - L2 LINE L2 -993 2321 2064 1840 217 75 15 chrX 134481621 134482126 -42492014 + L2 LINE L2 2476 3034 -279 2108 87 6 51 chrX 134482143 134482455 -42491685 - AluY SINE Alu -13 298 1 2300 101 0 0 chrX 134482466 134482754 -42491386 - AluSx SINE Alu -24 288 1 575 174 81 74 chrX 134482942 134483006 -42491134 - MLT1A1 LTR MaLR -2 363 301 2437 67 3 3 chrX 134483006 134483304 -42490836 + AluSp SINE Alu 1 298 -15 575 174 81 74 chrX 134483304 134483388 -42490752 - MLT1A1 LTR MaLR -64 301 214 709 155 83 88 chrX 134483674 134483752 -42490388 + LTR47A LTR ERVL 261 338 -114 2226 130 3 0 chrX 134483752 134484059 -42490081 - AluSx SINE Alu -4 308 1 709 155 83 88 chrX 134484059 134484093 -42490047 + LTR47A LTR ERVL 338 371 -81 2560 70 0 3 chrX 134484093 134484405 -42489735 - AluY SINE Alu 0 311 1 709 155 83 88 chrX 134484405 134484484 -42489656 + LTR47A LTR ERVL 371 452 0 949 156 12 29 chrX 134484499 134484672 -42489468 - MLT1A1 LTR MaLR -164 201 32 1051 169 0 11 chrX 134484672 134484850 -42489290 + FRAM SINE Alu 1 173 -3 2145 105 27 7 chrX 134484852 134485148 -42488992 + AluSx SINE Alu 1 302 -10 250 182 0 0 chrX 134485148 134485192 -42488948 - MLT1A1 LTR MaLR -321 44 1 614 185 15 8 chrX 134485192 134485322 -42488818 + L2 LINE L2 3183 3313 0 246 242 67 67 chrX 134485369 134485547 -42488593 - L1P LINE L1 -1098 5048 4871 2500 77 3 0 chrX 134485551 134485863 -42488277 - AluSp SINE Alu 0 313 1 2153 121 0 0 chrX 134485863 134486152 -42487988 - AluSx SINE Alu -23 289 1 2548 71 7 0 chrX 134486641 134486950 -42487190 - AluY SINE Alu 0 311 1 1991 104 60 7 chrX 134487097 134487421 -42486719 + AluSx SINE Alu 1 338 0 291 308 6 19 chrX 134487789 134487945 -42486195 + L2 LINE L2 2586 2739 -575 2417 74 3 0 chrX 134487958 134488254 -42485886 + AluSq SINE Alu 1 297 -16 2223 107 10 0 chrX 134489041 134489351 -42484789 + AluSq SINE Alu 1 313 0 403 226 20 39 chrX 134489358 134489460 -42484680 - L1ME4a LINE L1 -66 6055 5956 205 250 50 30 chrX 134489486 134489586 -42484554 + L2 LINE L2 2142 2243 -1071 336 289 77 61 chrX 134489589 134489745 -42484395 + L2 LINE L2 2353 2505 -809 2045 119 58 47 chrX 134489745 134490106 -42484034 - MLT1A1 LTR MaLR 0 365 1 336 289 77 61 chrX 134490106 134490260 -42483880 + L2 LINE L2 2505 2668 -646 351 289 59 55 chrX 134490278 134490534 -42483606 + L2 LINE L2 2843 3099 -214 21 0 0 0 chrX 134490612 134490633 -42483507 + AT_rich Low_complexity Low_complexity 1 21 0 639 133 145 54 chrX 134490654 134490793 -42483347 - MER53 DNA DNA 0 189 31 2218 78 3 42 chrX 134490793 134491099 -42483041 - AluSx SINE Alu -18 294 1 639 133 145 54 chrX 134491099 134491125 -42483015 - MER53 DNA DNA -158 31 9 2186 72 31 17 chrX 134491160 134491453 -42482687 - AluY SINE Alu -14 297 1 185 299 30 0 chrX 134491520 134491587 -42482553 + L2 LINE L2 3201 3269 -3 286 240 80 53 chrX 134491712 134491862 -42482278 + MIR SINE MIR 106 259 -3 1750 113 41 38 chrX 134494107 134494399 -42479741 - AluSx SINE Alu -12 300 8 1222 112 6 0 chrX 134495248 134495417 -42478723 + AluSg/x SINE Alu 130 299 -13 323 111 0 125 chrX 134495519 134495591 -42478549 - AluSp/q SINE Alu -11 292 230 267 103 0 0 chrX 134495735 134495774 -42478366 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 422 129 0 43 chrX 134495775 134495845 -42478295 - AluSg/x SINE Alu -32 278 212 959 151 13 7 chrX 134495845 134495997 -42478143 - AluSq SINE Alu -160 153 1 1954 195 58 2 chrX 134496000 134496395 -42477745 + L1MD2 LINE L1 5703 6119 -240 1464 231 91 85 chrX 134496396 134496766 -42477374 + L1MEc LINE L1 1520 1886 -4496 8236 114 12 52 chrX 134496766 134497083 -42477057 + HSMAR2 DNA Mariner 4 332 -970 2050 139 14 0 chrX 134497083 134497377 -42476763 - AluJb SINE Alu -13 299 2 8236 114 12 52 chrX 134497377 134498358 -42475782 + HSMAR2 DNA Mariner 332 1247 -55 2402 97 0 0 chrX 134498358 134498658 -42475482 - AluSq SINE Alu -13 300 1 8236 114 12 52 chrX 134498658 134498710 -42475430 + HSMAR2 DNA Mariner 1247 1300 -2 1464 231 91 85 chrX 134498710 134498839 -42475301 + L1MEc LINE L1 1886 2013 -4369 2174 110 3 32 chrX 134498839 134499149 -42474991 - AluSx SINE Alu -11 301 1 1464 231 91 85 chrX 134499149 134499638 -42474502 + L1MEc LINE L1 2013 2539 -3843 2122 125 16 16 chrX 134499638 134499950 -42474190 + AluSx SINE Alu 1 312 0 1464 231 91 85 chrX 134499950 134500228 -42473912 + L1MEc LINE L1 2539 2814 -3568 2110 143 13 0 chrX 134500264 134500571 -42473569 - AluSx SINE Alu -1 311 1 834 225 63 24 chrX 134500575 134500828 -42473312 + L1MB7 LINE L1 5921 6183 -1 3292 186 90 7 chrX 134500834 134501570 -42472570 + L1MB8 LINE L1 5381 6177 -1 2127 141 0 6 chrX 134501674 134501987 -42472153 - AluSx SINE Alu -1 311 1 714 303 15 42 chrX 134502181 134502442 -42471698 + LTR16A1 LTR ERVL 204 457 0 737 236 104 86 chrX 134502690 134503122 -42471018 - LTR16A1 LTR ERVL -17 440 1 1211 314 27 27 chrX 134503306 134503907 -42470233 - HERVL LTR ERVL -367 5287 4687 1324 199 0 0 chrX 134503910 134504131 -42470009 - MER58A DNA MER1_type -3 221 1 2396 157 0 0 chrX 134504157 134504514 -42469626 - MER47B DNA MER2_type -61 357 1 6271 318 50 55 chrX 134504514 134504598 -42469542 - HERVL LTR ERVL -1039 4725 4642 2310 94 0 13 chrX 134504598 134504896 -42469244 - AluSq SINE Alu -19 294 1 6271 318 50 55 chrX 134504896 134506163 -42467977 - HERVL LTR ERVL -1122 4642 3370 2325 98 0 0 chrX 134506163 134506459 -42467681 + AluSx SINE Alu 1 296 -16 6271 318 50 55 chrX 134506459 134507399 -42466741 - HERVL LTR ERVL -2394 3370 2427 2168 129 0 0 chrX 134507399 134507686 -42466454 - AluSx SINE Alu -25 287 1 6271 318 50 55 chrX 134507686 134508686 -42465454 - HERVL LTR ERVL -3337 2427 1424 817 168 8 0 chrX 134508686 134508817 -42465323 - FLAM_C SINE Alu 0 133 2 6271 318 50 55 chrX 134508817 134508830 -42465310 - HERVL LTR ERVL -4340 1424 1412 284 0 28 0 chrX 134508830 134508866 -42465274 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2035 122 7 0 chrX 134508866 134509144 -42464996 - AluSx SINE Alu -32 280 1 6271 318 50 55 chrX 134509144 134510000 -42464140 - HERVL LTR ERVL -4350 1414 456 1209 180 10 0 chrX 134510019 134510219 -42463921 + MSTA LTR MaLR 1 202 -226 3722 131 5 81 chrX 134510224 134510721 -42463419 + Tigger2 DNA MER2_type 273 708 -2010 2458 83 0 0 chrX 134510721 134511023 -42463117 - AluY SINE Alu -8 303 2 3722 131 5 81 chrX 134511023 134511191 -42462949 + Tigger2 DNA MER2_type 708 887 -1831 2155 117 41 0 chrX 134511191 134511482 -42462658 + AluSx SINE Alu 1 303 -9 2293 102 10 0 chrX 134511493 134511787 -42462353 + AluSx SINE Alu 1 297 -15 10922 107 42 11 chrX 134511787 134513110 -42461030 + Tigger2 DNA MER2_type 1068 2450 -268 2238 108 3 10 chrX 134513110 134513424 -42460716 - AluSx SINE Alu 0 312 1 10922 107 42 11 chrX 134513424 134513701 -42460439 + Tigger2 DNA MER2_type 2450 2717 -1 3374 155 22 6 chrX 134513751 134514298 -42459842 + MER67C LTR ERV1 155 710 0 615 126 42 0 chrX 134514772 134514867 -42459273 + HY3 scRNA scRNA 1 99 -2 586 87 8 2 chrX 134514881 134515125 -42459015 + AluSp SINE Alu 1 301 -12 204 222 0 48 chrX 134515196 134515259 -42458881 + CT-rich Low_complexity Low_complexity 3 62 0 1295 193 129 39 chrX 134515568 134515931 -42458209 + MSTD LTR MaLR 1 396 0 1582 182 3 36 chrX 134517365 134517728 -42456412 + L1M4 LINE L1 5006 5356 -790 1773 162 0 24 chrX 134517867 134518163 -42455977 + AluJb SINE Alu 24 312 0 631 201 13 6 chrX 134518404 134518563 -42455577 + CT-rich Low_complexity Low_complexity 3 162 0 2133 163 39 17 chrX 134518949 134519306 -42454834 + MLT1A1 LTR MaLR 1 365 0 24 53 0 0 chrX 134519716 134519754 -42454386 + AT_rich Low_complexity Low_complexity 1 38 0 2309 117 0 0 chrX 134519922 134520231 -42453909 - AluSx SINE Alu -3 309 1 910 141 0 0 chrX 134520735 134520870 -42453270 + L1MB1 LINE L1 6033 6167 -1 2389 57 0 3 chrX 134520893 134521176 -42452964 + L1PA8 LINE L1 5889 6170 -2 617 149 9 70 chrX 134521917 134522031 -42452109 - AluSg/x SINE Alu -23 287 181 2158 142 3 0 chrX 134522631 134522942 -42451198 + AluJo SINE Alu 1 312 0 2198 180 7 20 chrX 134524806 134525212 -42448928 + MER67C LTR ERV1 1 401 -309 878 220 22 28 chrX 134525226 134525355 -42448785 - MLT1A1 LTR MaLR 0 365 236 4298 94 9 2 chrX 134525355 134525905 -42448235 - MER41A LTR ERV1 0 554 1 878 220 22 28 chrX 134525905 134525957 -42448183 - MLT1A1 LTR MaLR -129 236 185 719 141 41 0 chrX 134525960 134526081 -42448059 + MLT1D LTR MaLR 378 503 -2 360 284 52 0 chrX 134526086 134526202 -42447938 - LTR16A1 LTR ERVL -313 144 23 555 284 107 40 chrX 134526240 134526690 -42447450 - L1M4 LINE L1 -992 5154 4675 23 33 0 0 chrX 134526721 134526751 -42447389 + AT_rich Low_complexity Low_complexity 1 30 0 1804 175 47 24 chrX 134526754 134527136 -42447004 - L1MB7 LINE L1 -10 6174 5784 1200 167 163 17 chrX 134527136 134527548 -42446592 + LTR28 LTR ERV1 6 528 -492 882 142 0 15 chrX 134527572 134527706 -42446434 - FLAM_C SINE Alu 0 133 2 3111 195 40 7 chrX 134527713 134528664 -42445476 + L1MD2 LINE L1 4853 5837 -522 327 284 37 9 chrX 134528665 134528774 -42445366 + LTR67 LTR ERVL 446 557 0 558 275 48 72 chrX 134528872 134529027 -42445113 + L1M2 LINE L1 5175 5332 -959 2083 137 3 3 chrX 134529027 134529327 -42444813 + AluSx SINE Alu 1 300 -12 558 275 48 72 chrX 134529327 134529608 -42444532 + L1M2 LINE L1 5332 5606 -685 4147 194 39 75 chrX 134529617 134529848 -42444292 + L1ME2 LINE L1 4871 5109 -1055 2266 121 0 0 chrX 134529848 134530155 -42443985 - AluSx SINE Alu -5 307 1 4147 194 39 75 chrX 134530155 134530342 -42443798 + L1ME2 LINE L1 5109 5301 -863 2143 119 37 42 chrX 134530342 134530507 -42443633 - L1MA3 LINE L1 0 6305 6141 1789 161 21 0 chrX 134530507 134530787 -42443353 - AluJo SINE Alu -26 286 1 2143 119 37 42 chrX 134530787 134530998 -42443142 - L1MA3 LINE L1 -164 6141 5931 4147 194 39 75 chrX 134530998 134531915 -42442225 + L1ME2 LINE L1 5301 6158 -6 1982 163 0 0 chrX 134532113 134532413 -42441727 - AluJb SINE Alu -12 300 1 278 270 17 52 chrX 134532586 134532701 -42441439 + MIR SINE MIR 152 262 0 1433 82 11 0 chrX 134532757 134532939 -42441201 - L1PA8 LINE L1 0 6172 5989 195 243 40 54 chrX 134532939 134533013 -42441127 - MER5A DNA MER1_type -115 74 2 * 425 347 62 64 chrX 134533013 134533487 -42440653 + L2 LINE L2 2176 2648 -666 491 81 0 0 chrX 134533659 134533721 -42440419 + L1PA5 LINE L1 6086 6147 -7 360 64 0 0 chrX 134533727 134533774 -42440366 + (TG)n Simple_repeat Simple_repeat 2 48 0 1025 183 0 0 chrX 134533795 134533964 -42440176 + AluSg/x SINE Alu 132 300 -10 422 217 0 11 chrX 134534032 134534124 -42440016 - AluJ/FRAM SINE Alu -2 310 220 2191 108 3 10 chrX 134534126 134534431 -42439709 - AluSg SINE Alu -7 303 1 1223 247 43 0 chrX 134534463 134534742 -42439398 - L1ME3 LINE L1 -50 6112 5822 238 208 0 0 chrX 134534743 134534791 -42439349 - L1ME4a LINE L1 -117 6004 5957 2488 267 107 37 chrX 134535025 134535317 -42438823 - L2 LINE L2 -2 3311 3041 2139 109 10 29 chrX 134535317 134535629 -42438511 + AluSx SINE Alu 1 306 -6 2488 267 107 37 chrX 134535629 134535688 -42438452 - L2 LINE L2 -272 3041 2988 6429 107 9 3 chrX 134535688 134536823 -42437317 + L1PA13 LINE L1 5017 6161 -2 2488 267 107 37 chrX 134536823 134537643 -42436497 - L2 LINE L2 -325 2988 1992 23 0 0 0 chrX 134537872 134537895 -42436245 + AT_rich Low_complexity Low_complexity 1 23 0 1864 151 13 13 chrX 134538161 134538465 -42435675 - AluJb SINE Alu -8 304 1 32 67 0 0 chrX 134538602 134538662 -42435478 + AT_rich Low_complexity Low_complexity 1 60 0 1705 201 131 44 chrX 134538687 134538793 -42435347 + MLT1D LTR MaLR 8 103 -402 1884 162 0 3 chrX 134538793 134539089 -42435051 - AluJb SINE Alu -17 295 1 1705 201 131 44 chrX 134539089 134539440 -42434700 + MLT1D LTR MaLR 103 505 0 21 82 0 0 chrX 134539443 134539492 -42434648 + AT_rich Low_complexity Low_complexity 1 49 0 1517 84 0 0 chrX 134540377 134540567 -42433573 - AluSx SINE Alu -122 190 1 793 133 30 44 chrX 134540603 134540738 -42433402 - L1PA15 LINE L1 0 6165 6033 1154 208 0 4 chrX 134540738 134540974 -42433166 + L1P LINE L1 5056 5290 -856 216 238 60 36 chrX 134541219 134541303 -42432837 + L2 LINE L2 2304 2389 -925 265 246 0 0 chrX 134541303 134541364 -42432776 - L2 LINE L2 -2575 739 679 836 178 108 0 chrX 134541740 134541897 -42432243 - AluSg/x SINE Alu -19 293 120 457 270 65 11 chrX 134541903 134542094 -42432046 - L1MC4a LINE L1 -171 5950 5743 1289 153 0 0 chrX 134543090 134543286 -42430854 - L1MD2 LINE L1 -417 5942 5747 * 4496 157 29 39 chrX 134543280 134544076 -42430064 - L1MA10 LINE L1 -38 6296 5494 1883 59 47 39 chrX 134544076 134544330 -42429810 + AluY SINE Alu 44 299 -12 4496 157 29 39 chrX 134544330 134544499 -42429641 - L1MA10 LINE L1 -840 5494 5325 3041 80 5 8 chrX 134544499 134544875 -42429265 + THE1C LTR MaLR 1 375 0 4496 157 29 39 chrX 134544875 134544990 -42429150 - L1MA10 LINE L1 -1009 5325 5066 309 291 135 20 chrX 134544993 134545141 -42428999 + MLT1J LTR MaLR 287 451 -60 873 225 100 5 chrX 134545144 134545522 -42428618 + L1ME LINE L1 5152 5575 -595 216 291 116 0 chrX 134545530 134545616 -42428524 - L2 LINE L2 -2364 950 855 841 198 11 21 chrX 134545617 134545804 -42428336 + AluSg SINE Alu 1 185 -125 242 103 0 0 chrX 134545935 134545974 -42428166 + (G)n Simple_repeat Simple_repeat 1 39 0 1113 169 41 0 chrX 134546333 134546528 -42427612 - AluSx SINE Alu -109 203 1 2147 81 20 20 chrX 134546573 134546868 -42427272 + AluSg SINE Alu 1 295 -15 2132 129 3 3 chrX 134547163 134547472 -42426668 + AluSc SINE Alu 1 309 0 2226 108 0 3 chrX 134547487 134547783 -42426357 + AluSg SINE Alu 3 297 -13 22 0 0 0 chrX 134550516 134550538 -42423602 + AT_rich Low_complexity Low_complexity 1 22 0 181 98 279 66 chrX 134551363 134551424 -42422716 + MIR SINE MIR 67 140 -122 1870 129 17 26 chrX 134551632 134551934 -42422206 + AluSg SINE Alu 1 299 -11 2285 68 17 10 chrX 134552124 134552420 -42421720 - AluY SINE Alu -13 298 1 1893 134 48 0 chrX 134552450 134552615 -42421525 - AluSq SINE Alu -8 305 119 180 0 0 0 chrX 134552615 134552635 -42421505 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1893 134 48 0 chrX 134552635 134552760 -42421380 - AluSq SINE Alu -194 119 1 276 100 0 0 chrX 134552760 134552800 -42421340 + (T)n Simple_repeat Simple_repeat 1 40 0 1440 135 50 5 chrX 134552809 134553031 -42421109 - AluSx SINE Alu -77 235 4 1982 116 3 7 chrX 134555043 134555327 -42418813 - AluSx SINE Alu -29 283 1 406 303 162 11 chrX 134555620 134555891 -42418249 - L1ME LINE L1 -400 5762 5451 1078 209 227 25 chrX 134555931 134556371 -42417769 - L1ME2 LINE L1 -27 6137 5609 2077 192 108 74 chrX 134556410 134556508 -42417632 - MER6A DNA MER2_type -289 576 483 1407 151 65 36 chrX 134556508 134556787 -42417353 - AluJo SINE Alu -23 289 3 2077 192 108 74 chrX 134556787 134557245 -42416895 - MER6A DNA MER2_type -382 483 1 943 168 53 66 chrX 134557246 134557316 -42416824 - L1ME2 LINE L1 -558 5606 5537 2165 93 38 0 chrX 134557316 134557607 -42416533 - AluSx SINE Alu -10 302 1 943 168 53 66 chrX 134557607 134557762 -42416378 - L1ME2 LINE L1 -627 5537 5384 * 975 183 89 16 chrX 134557756 134557927 -42416213 - L1MD3 LINE L1 0 7995 7799 1232 175 147 4 chrX 134557927 134558179 -42415961 + AluJb SINE Alu 1 288 -24 975 183 89 16 chrX 134558179 134558253 -42415887 - L1MD3 LINE L1 -196 7799 7732 1252 94 12 160 chrX 134558264 134558443 -42415697 - AluSg/x SINE Alu -11 299 95 2348 82 0 0 chrX 134558443 134558736 -42415404 - AluY SINE Alu -18 293 1 1252 94 12 160 chrX 134558736 134558759 -42415381 - AluSg/x SINE Alu -215 95 139 2360 97 0 6 chrX 134558759 134559070 -42415070 - AluSg SINE Alu 0 310 2 1252 94 12 160 chrX 134559070 134559122 -42415018 - AluSg/x SINE Alu -170 140 82 483 236 97 26 chrX 134559122 134559317 -42414823 - L1ME2 LINE L1 -750 5396 5188 716 188 0 0 chrX 134559462 134559574 -42414566 - AluJb SINE Alu -198 114 3 542 259 135 29 chrX 134559576 134559821 -42414319 - L1ME2 LINE L1 -1109 5037 4759 2266 105 0 3 chrX 134559821 134560116 -42414024 - AluSq SINE Alu -19 294 1 542 259 135 29 chrX 134560116 134560144 -42413996 - L1ME2 LINE L1 -1387 4759 4735 416 211 171 49 chrX 134560140 134560386 -42413754 - HAL1 LINE L1 -1520 987 712 * 1763 153 63 20 chrX 134560387 134560428 -42413712 + MSTC LTR MaLR 1 39 -389 2243 104 0 0 chrX 134560428 134560717 -42413423 - AluSq SINE Alu -20 293 5 1763 153 63 20 chrX 134560717 134561021 -42413119 + MSTC LTR MaLR 39 428 0 752 169 190 22 chrX 134561450 134561634 -42412506 + MIR SINE MIR 48 262 0 2194 106 3 0 chrX 134561902 134562194 -42411946 - AluSq SINE Alu -20 293 1 705 249 127 20 chrX 134562200 134562453 -42411687 - L2 LINE L2 -1888 1426 1147 935 307 115 5 chrX 134562541 134562850 -42411290 + L2 LINE L2 1697 2056 -1258 1888 140 10 7 chrX 134562850 134563150 -42410990 - AluSq SINE Alu -12 301 1 935 307 115 5 chrX 134563150 134563215 -42410925 + L2 LINE L2 2056 2112 -1202 2101 134 0 0 chrX 134563217 134563516 -42410624 - AluSx SINE Alu -13 299 1 395 238 74 16 chrX 134563540 134563662 -42410478 + L2 LINE L2 3168 3296 -17 309 307 102 0 chrX 134563965 134564102 -42410038 - ERVL LTR ERVL -400 5364 5214 2113 128 3 0 chrX 134564124 134564430 -42409710 - AluSx SINE Alu -5 307 1 2185 107 0 19 chrX 134564476 134564794 -42409346 + AluSq SINE Alu 2 313 0 381 270 153 6 chrX 134564802 134564965 -42409175 - MIR SINE MIR -74 188 2 2316 253 128 43 chrX 134565005 134565843 -42408297 - L2 LINE L2 -973 2341 1385 2016 122 3 0 chrX 134565843 134566129 -42408011 - AluSx SINE Alu -25 287 1 2316 253 128 43 chrX 134566129 134566387 -42407753 - L2 LINE L2 -1929 1385 1151 2168 125 0 0 chrX 134566495 134566790 -42407350 + AluSx SINE Alu 1 295 -17 1026 293 90 3 chrX 134566806 134567151 -42406989 + L2 LINE L2 1724 2098 -1216 1897 160 7 3 chrX 134567157 134567464 -42406676 - AluSx SINE Alu -4 308 1 2321 65 52 0 chrX 134567474 134567765 -42406375 - AluY SINE Alu -5 306 1 621 245 7 14 chrX 134567790 134567937 -42406203 + L2 LINE L2 3168 3313 0 2102 121 0 3 chrX 134568410 134568707 -42405433 - AluSx SINE Alu -16 296 1 603 265 103 5 chrX 134568707 134568911 -42405229 - MIR SINE MIR -37 225 2 2015 265 108 41 chrX 134568951 134569564 -42404576 - L2 LINE L2 -978 2336 1765 2249 88 10 0 chrX 134569564 134569859 -42404281 - AluSp SINE Alu -14 299 2 2015 265 108 41 chrX 134569859 134570094 -42404046 - L2 LINE L2 -1549 1765 1547 204 97 0 0 chrX 134570094 134570125 -42404015 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 2033 103 14 4 chrX 134570127 134570408 -42403732 - AluSq SINE Alu -29 284 1 2015 265 108 41 chrX 134570408 134570673 -42403467 - L2 LINE L2 -1767 1547 1148 832 284 158 6 chrX 134570761 134571110 -42403030 + L2 LINE L2 1697 2098 -1216 2412 93 7 0 chrX 134571117 134571419 -42402721 - AluSp SINE Alu -9 304 1 1981 148 0 0 chrX 134571419 134571716 -42402424 - AluSx SINE Alu -15 297 1 596 234 0 21 chrX 134571743 134571884 -42402256 + L2 LINE L2 3176 3313 0 312 296 92 28 chrX 134572184 134572254 -42401886 - ERVL LTR ERVL -400 5364 5300 387 0 0 0 chrX 134572254 134572297 -42401843 + (TA)n Simple_repeat Simple_repeat 2 44 0 312 296 92 28 chrX 134572297 134572368 -42401772 - ERVL LTR ERVL -464 5300 5214 1536 144 95 35 chrX 134572414 134572698 -42401442 + AluJo SINE Alu 1 301 -11 523 371 11 11 chrX 134572779 134573062 -42401078 + L1MEc LINE L1 37 319 -6077 2257 117 0 0 chrX 134573135 134573433 -42400707 - AluSx SINE Alu -14 298 1 1874 160 6 13 chrX 134573529 134573841 -42400299 + AluJo SINE Alu 3 312 0 2209 113 0 0 chrX 134574042 134574353 -42399787 - AluSq SINE Alu 0 311 1 1371 207 231 81 chrX 134574354 134574996 -42399144 - LTR41 LTR ERVL -31 742 5 258 220 30 40 chrX 134574998 134575098 -42399042 - L2 LINE L2 -2568 746 648 317 355 20 13 chrX 134575117 134575269 -42398871 + MER5A DNA MER1_type 7 159 -30 839 251 56 47 chrX 134576398 134576737 -42397403 + L1ME1 LINE L1 5821 6162 -4 395 284 84 21 chrX 134576853 134577043 -42397097 - L2 LINE L2 0 3313 3112 423 218 165 8 chrX 134577078 134577211 -42396929 + MER117 DNA MER1_type 38 191 -6 207 162 0 0 chrX 134578090 134578127 -42396013 + (TG)n Simple_repeat Simple_repeat 2 38 0 440 237 32 0 chrX 134580443 134580536 -42393604 + MIR SINE MIR 96 191 -71 1814 151 38 10 chrX 134580536 134580827 -42393313 + AluJb SINE Alu 1 299 -13 715 218 18 35 chrX 134580985 134581155 -42392985 + MIR SINE MIR 14 180 -82 9225 154 11 17 chrX 134581170 134581527 -42392613 - L1PB1 LINE L1 -5 6146 5788 249 33 0 0 chrX 134581527 134581557 -42392583 + (TG)n Simple_repeat Simple_repeat 2 31 0 9225 154 11 17 chrX 134581557 134582061 -42392079 - L1PB1 LINE L1 -363 5788 5282 2388 93 0 0 chrX 134582061 134582372 -42391768 - AluSx SINE Alu -1 311 1 491 77 0 13 chrX 134582372 134582450 -42391690 + (TTTA)n Simple_repeat Simple_repeat 2 78 0 9225 154 11 17 chrX 134582450 134584210 -42389930 - L1PB1 LINE L1 -867 5284 3546 275 310 0 0 chrX 134584212 134584299 -42389841 + MIR SINE MIR 176 262 0 183 139 0 0 chrX 134584431 134584467 -42389673 + (TC)n Simple_repeat Simple_repeat 2 37 0 2386 109 0 0 chrX 134584633 134584945 -42389195 - AluSx SINE Alu 0 312 1 25 65 0 0 chrX 134585164 134585210 -42388930 + AT_rich Low_complexity Low_complexity 1 46 0 670 167 0 0 chrX 134585210 134585312 -42388828 - U6 snRNA snRNA -5 102 1 910 298 8 4 chrX 134585450 134585692 -42388448 + MIR SINE MIR 10 252 -10 244 235 39 0 chrX 134585966 134586017 -42388123 + L2 LINE L2 3210 3262 -10 1926 142 30 3 chrX 134586419 134586722 -42387418 - AluSx SINE Alu -1 311 1 6186 75 24 2 chrX 134586759 134587564 -42386576 - L1MA1 LINE L1 0 6302 5481 3828 214 83 47 chrX 134587564 134588307 -42385833 - L1M4 LINE L1 -978 5168 4276 1906 155 0 3 chrX 134588307 134588597 -42385543 - AluJb SINE Alu -23 289 1 3828 214 83 47 chrX 134588597 134589113 -42385027 - L1M4 LINE L1 -1870 4276 3780 800 245 112 37 chrX 134589110 134589432 -42384708 - L1ME LINE L1 -430 5691 5346 * 2087 109 3 0 chrX 134589870 134590181 -42383959 - AluSx SINE Alu 0 312 1 353 223 11 0 chrX 134590263 134590357 -42383783 + CT-rich Low_complexity Low_complexity 1 95 0 345 273 127 0 chrX 134590659 134590769 -42383371 + MIR3 SINE MIR 35 158 -50 297 0 0 0 chrX 134591439 134591472 -42382668 + (CTG)n Simple_repeat Simple_repeat 2 34 0 223 385 50 19 chrX 134593509 134593617 -42380523 - MIR3 SINE MIR -92 116 15 564 323 48 20 chrX 134594068 134594319 -42379821 - MIR SINE MIR -3 259 2 492 252 0 52 chrX 134594367 134594502 -42379638 - MER5B DNA MER1_type -5 173 46 2187 256 10 26 chrX 134594526 134595112 -42379028 - L1ME3A LINE L1 -27 6143 5567 330 170 0 0 chrX 134595137 134595190 -42378950 - MER5B DNA MER1_type -124 54 2 427 344 47 26 chrX 134595348 134595458 -42378682 + L2 LINE L2 3075 3192 -80 2332 113 0 0 chrX 134595458 134595768 -42378372 - AluSx SINE Alu -2 310 1 427 344 47 26 chrX 134595768 134595849 -42378291 + L2 LINE L2 3192 3270 -2 226 297 0 0 chrX 134596307 134596371 -42377769 + tRNA-Glu-GAG tRNA tRNA 7 70 -5 2186 122 0 0 chrX 134596519 134596815 -42377325 + AluSx SINE Alu 1 296 -16 299 260 0 0 chrX 134596831 134596908 -42377232 + MIR SINE MIR 180 256 -6 2245 88 3 26 chrX 134597102 134597407 -42376733 + AluSq SINE Alu 6 303 -10 28 61 0 0 chrX 134597843 134597892 -42376248 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chrX 134598435 134598458 -42375682 + AT_rich Low_complexity Low_complexity 1 23 0 1946 110 46 4 chrX 134599667 134599948 -42374192 - AluSx SINE Alu -14 298 6 253 130 0 93 chrX 134600416 134600470 -42373670 + L2 LINE L2 3265 3313 0 24 32 0 0 chrX 134600667 134600698 -42373442 + AT_rich Low_complexity Low_complexity 1 31 0 30 48 0 16 chrX 134600918 134600959 -42373181 + AT_rich Low_complexity Low_complexity 1 42 -19 2622 42 0 6 chrX 134600959 134601272 -42372868 + AluY SINE Alu 1 311 0 30 48 0 16 chrX 134601272 134601292 -42372848 + AT_rich Low_complexity Low_complexity 42 61 0 27 0 0 0 chrX 134601878 134601905 -42372235 + AT_rich Low_complexity Low_complexity 1 27 0 288 163 0 0 chrX 134601908 134601951 -42372189 - AluSx SINE Alu -14 288 246 1761 112 27 27 chrX 134601968 134602226 -42371914 - AluSx SINE Alu -54 258 1 524 198 90 0 chrX 134603242 134603353 -42370787 - L2 LINE L2 -2 3311 3191 2135 122 13 6 chrX 134604696 134605007 -42369133 - AluSq SINE Alu 0 313 1 462 266 8 39 chrX 134605883 134606011 -42368129 - MIR SINE MIR -65 143 20 439 238 0 101 chrX 134607335 134607447 -42366693 + MIR SINE MIR 99 190 -72 2159 178 22 6 chrX 134607447 134607806 -42366334 - MLT1A1 LTR MaLR 0 365 1 439 238 0 101 chrX 134607806 134607861 -42366279 + MIR SINE MIR 190 249 -13 1714 123 21 105 chrX 134608174 134608506 -42365634 + AluYb8 SINE Alu 1 304 -14 189 0 0 0 chrX 134611605 134611626 -42362514 + (T)n Simple_repeat Simple_repeat 1 21 0 482 271 117 29 chrX 134612411 134612651 -42361489 - MIR SINE MIR 0 262 2 209 345 97 35 chrX 134612675 134612788 -42361352 - L2 LINE L2 -34 3238 3119 190 292 154 0 chrX 134614269 134614334 -42359806 + MIR SINE MIR 34 108 -154 280 170 0 0 chrX 134614423 134614470 -42359670 + MIR SINE MIR 215 261 -1 243 241 19 0 chrX 134614724 134614778 -42359362 - Charlie4 DNA MER1_type -4 1957 1903 450 35 0 0 chrX 134614937 134614995 -42359145 + L1PB4 LINE L1 6099 6156 0 1807 144 13 10 chrX 134616320 134616618 -42357522 - AluJb SINE Alu -13 299 1 24 0 0 0 chrX 134616895 134616919 -42357221 + AT_rich Low_complexity Low_complexity 1 24 0 2400 73 3 0 chrX 134616969 134617272 -42356868 - AluY SINE Alu -7 304 1 481 215 0 0 chrX 134617273 134617352 -42356788 - Tigger2 DNA MER2_type 0 2718 2640 1603 109 113 4 chrX 134617791 134618038 -42356102 - Tigger2 DNA MER2_type -54 2664 2391 326 150 0 83 chrX 134618017 134618077 -42356063 - Tigger2 DNA MER2_type -2663 55 1 * 1219 260 84 14 chrX 134618884 134619002 -42355138 + L2 LINE L2 2599 2707 -565 2114 118 0 0 chrX 134619002 134619282 -42354858 + AluSx SINE Alu 1 280 -32 192 40 0 0 chrX 134619282 134619307 -42354833 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1219 260 84 14 chrX 134619307 134619819 -42354321 + L2 LINE L2 2706 3272 0 324 317 65 52 chrX 134620224 134620514 -42353626 - L2 LINE L2 -552 2762 2469 217 364 5 86 chrX 134621190 134621388 -42352752 - L2 LINE L2 -209 3063 2882 923 94 8 0 chrX 134621610 134621737 -42352403 - FLAM_C SINE Alu -3 130 3 2250 81 46 0 chrX 134621828 134622113 -42352027 - AluSp SINE Alu -15 298 1 288 0 0 0 chrX 134622660 134622692 -42351448 + (CA)n Simple_repeat Simple_repeat 2 33 0 268 253 89 0 chrX 134622774 134622853 -42351287 + MLT1L LTR MaLR 450 535 -80 2564 232 38 25 chrX 134624173 134625012 -42349128 - L1M4 LINE L1 -2011 4135 3286 185 385 18 56 chrX 134625139 134625425 -42348715 + L2 LINE L2 2836 3110 -162 642 274 45 11 chrX 134625456 134625635 -42348505 + MIR SINE MIR 7 191 -71 346 272 84 66 chrX 134625712 134625925 -42348215 + L1ME4a LINE L1 5847 6063 -58 24 32 0 0 chrX 134626158 134626189 -42347951 + AT_rich Low_complexity Low_complexity 1 31 0 1900 133 78 23 chrX 134626445 134626792 -42347348 - MER47A DNA MER2_type 0 366 1 335 262 92 63 chrX 134628534 134628740 -42345400 - L1MC/D LINE L1 -2021 5787 5576 375 209 26 17 chrX 134629229 134629344 -42344796 - L1ME4a LINE L1 -40 6081 5966 225 94 0 0 chrX 134629361 134629393 -42344747 + (TA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chrX 134629413 134629434 -42344706 + AT_rich Low_complexity Low_complexity 1 21 0 2316 89 0 0 chrX 134629468 134629761 -42344379 - AluSg SINE Alu -17 293 1 2442 93 0 0 chrX 134629815 134630125 -42344015 - AluSx SINE Alu -2 310 1 1699 206 107 28 chrX 134630194 134630256 -42343884 - MLT2B1 LTR ERVL 0 520 464 486 0 0 0 chrX 134630256 134630310 -42343830 + (GA)n Simple_repeat Simple_repeat 1 54 0 1699 206 107 28 chrX 134630310 134630713 -42343427 - MLT2B1 LTR ERVL -56 464 20 187 179 0 26 chrX 134631437 134631476 -42342664 - MER5A DNA MER1_type -22 167 130 2295 104 0 0 chrX 134631480 134631777 -42342363 + AluSx SINE Alu 4 300 -12 282 160 0 0 chrX 134631777 134631827 -42342313 + GA-rich Low_complexity Low_complexity 1 50 0 1349 45 11 0 chrX 134631829 134632005 -42342135 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 217 358 0 0 chrX 134632010 134632091 -42342049 + MER5B DNA MER1_type 59 139 -39 246 370 24 30 chrX 134632144 134632309 -42341831 - L2 LINE L2 -198 3074 2911 1837 170 3 6 chrX 134634521 134634833 -42339307 + AluJb SINE Alu 1 311 -1 24 0 0 0 chrX 134634839 134634863 -42339277 + AT_rich Low_complexity Low_complexity 1 24 0 2334 119 0 0 chrX 134634933 134635243 -42338897 + AluSg SINE Alu 1 310 0 2035 128 3 19 chrX 134635357 134635669 -42338471 - AluSx SINE Alu -5 307 1 4799 151 47 10 chrX 134635971 134637235 -42336905 - L1MB7 LINE L1 -1 6463 5155 3128 146 38 30 chrX 134637235 134637734 -42336406 - L1MA8 LINE L1 -1 6290 5783 1919 172 0 0 chrX 134637734 134638030 -42336110 - AluJb SINE Alu -16 296 1 3128 146 38 30 chrX 134638030 134638167 -42335973 - L1MA8 LINE L1 -508 5783 5649 7128 218 43 23 chrX 134638176 134640292 -42333848 - L1MB7 LINE L1 -1513 4913 2755 338 234 40 8 chrX 134640582 134640706 -42333434 - MER103 DNA DNA -4 162 35 10740 160 80 41 chrX 134640940 134643070 -42331070 - L1MB7 LINE L1 -3654 2772 511 2248 84 3 3 chrX 134643070 134643400 -42330740 + AluSq SINE Alu 1 330 0 10740 160 80 41 chrX 134643400 134643932 -42330208 - L1MB7 LINE L1 -5915 511 1 514 204 8 0 chrX 134643913 134644045 -42330095 - L1M4 LINE L1 -3104 3042 2910 * 354 223 0 7 chrX 134644253 134644387 -42329753 + MER20 DNA MER1_type 1 218 -1 199 246 46 31 chrX 134644775 134644840 -42329300 + L2 LINE L2 3207 3272 0 866 87 0 0 chrX 134644911 134645026 -42329114 - L1PA6 LINE L1 -11 6143 6029 22 35 0 0 chrX 134645152 134645181 -42328959 + AT_rich Low_complexity Low_complexity 1 29 0 229 268 45 62 chrX 134645416 134645528 -42328612 + MIR SINE MIR 113 222 -40 762 145 0 8 chrX 134645541 134645658 -42328482 + FLAM_C SINE Alu 12 127 -16 26 30 0 0 chrX 134646707 134646740 -42327400 + AT_rich Low_complexity Low_complexity 1 33 0 2054 122 0 52 chrX 134646896 134647244 -42326896 + AluSx SINE Alu 1 312 0 2022 120 7 0 chrX 134647450 134647757 -42326383 + AluSx SINE Alu 1 309 0 296 285 53 8 chrX 134647866 134647995 -42326145 - MIR SINE MIR -71 137 21 2434 89 14 43 chrX 134648112 134648528 -42325612 - L1P5 LINE L1 -480 5674 5271 318 20 59 0 chrX 134648957 134649008 -42325132 + (TA)n Simple_repeat Simple_repeat 1 54 0 1922 108 8 0 chrX 134649029 134649287 -42324853 - AluSx SINE Alu -52 260 1 2135 116 7 3 chrX 134649334 134649628 -42324512 - AluSx SINE Alu -17 295 1 888 228 56 56 chrX 134649675 134649925 -42324215 + MIR SINE MIR 13 262 0 1623 70 0 0 chrX 134650917 134651132 -42323008 - L1PA8 LINE L1 0 6172 5958 484 258 106 49 chrX 134652547 134652811 -42321329 - L2 LINE L2 -1 3312 3034 418 224 82 45 chrX 134653710 134653844 -42320296 - MIR SINE MIR -89 173 35 180 111 0 0 chrX 134653983 134654010 -42320130 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 1512 99 131 0 chrX 134654010 134654231 -42319909 - AluSx SINE Alu -20 292 43 222 45 68 0 chrX 134654264 134654308 -42319832 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1156 201 0 26 chrX 134654308 134654487 -42319653 - L1M4 LINE L1 -617 5567 5396 2168 112 47 19 chrX 134654487 134654852 -42319288 + THE1C LTR MaLR 1 375 0 1156 201 0 26 chrX 134654852 134654945 -42319195 - L1M4 LINE L1 -788 5396 5302 803 161 31 31 chrX 134654948 134655110 -42319030 - L1MB7 LINE L1 -16 6448 6287 734 164 0 13 chrX 134655115 134655295 -42318845 - L1MB7 LINE L1 -743 5683 5516 1050 141 31 16 chrX 134655297 134655489 -42318651 - Tigger1 DNA MER2_type -6 2412 2218 2375 90 3 0 chrX 134655489 134655790 -42318350 + AluSp SINE Alu 1 302 -11 1065 160 0 6 chrX 134655790 134655971 -42318169 - Tigger1 DNA MER2_type -2237 181 2 1157 186 51 36 chrX 134655971 134656305 -42317835 - L1MB7 LINE L1 -904 5522 5184 1850 207 111 22 chrX 134656320 134657304 -42316836 - L1MB7 LINE L1 -3392 3034 1924 2681 42 0 0 chrX 134657304 134657614 -42316526 + AluY SINE Alu 1 310 -1 1850 207 111 22 chrX 134657614 134657797 -42316343 - L1MB7 LINE L1 -4502 1924 1759 4146 210 33 20 chrX 134657797 134658765 -42315375 - L1MCb LINE L1 -4797 1767 769 1838 138 33 10 chrX 134658765 134659069 -42315071 - AluSx SINE Alu -1 311 1 4146 210 33 20 chrX 134659069 134659848 -42314292 - L1MCb LINE L1 -5795 769 1 27 0 0 0 chrX 134659884 134659911 -42314229 + AT_rich Low_complexity Low_complexity 1 27 0 397 313 84 52 chrX 134659927 134660296 -42313844 - L1M4b LINE L1 -4139 2818 2476 5859 208 85 36 chrX 134660449 134662660 -42311480 - L1M4b LINE L1 -4543 2416 82 1867 138 22 47 chrX 134662660 134662980 -42311160 - AluJo SINE Alu 0 312 1 5859 208 85 36 chrX 134662980 134663067 -42311073 - L1M4b LINE L1 -6877 82 1 544 300 31 0 chrX 134663144 134663304 -42310836 + MIR SINE MIR 59 223 -39 306 221 35 90 chrX 134663364 134663509 -42310631 - L1MC5 LINE L1 -41 7920 7784 2256 101 7 0 chrX 134664958 134665254 -42308886 + AluSx SINE Alu 1 298 -14 371 230 241 17 chrX 134666532 134666706 -42307434 + MIR SINE MIR 2 214 -48 904 116 0 0 chrX 134666919 134667040 -42307100 + FLAM_C SINE Alu 1 121 -22 245 321 37 45 chrX 134667522 134667656 -42306484 - L2 LINE L2 -644 2670 2538 22 0 0 0 chrX 134667912 134667934 -42306206 + AT_rich Low_complexity Low_complexity 1 22 0 551 200 26 0 chrX 134668213 134668328 -42305812 + L2 LINE L2 3194 3311 -2 973 176 6 28 chrX 134670605 134670630 -42303510 - AluJb SINE Alu -8 304 280 199 0 0 0 chrX 134670630 134670652 -42303488 + (TTTG)n Simple_repeat Simple_repeat 2 96 0 973 176 6 28 chrX 134670652 134670802 -42303338 - AluJb SINE Alu -32 280 133 37 0 0 0 chrX 134670891 134670928 -42303212 + AT_rich Low_complexity Low_complexity 1 37 0 713 217 152 14 chrX 134671091 134671306 -42302834 - L1ME1 LINE L1 -20 6146 5928 321 231 0 0 chrX 134672126 134672191 -42301949 - MER116 DNA Mariner -15 65 1 1059 130 0 0 chrX 134672573 134672742 -42301398 + (TA)n Simple_repeat Simple_repeat 2 170 0 910 135 14 0 chrX 134673678 134673819 -42300321 - AluSg/x SINE Alu -2 310 168 291 330 22 22 chrX 134673872 134673963 -42300177 - L2 LINE L2 -24 3248 3158 247 308 51 26 chrX 134674590 134674707 -42299433 - L2 LINE L2 -976 2338 2219 331 312 86 47 chrX 134675025 134675259 -42298881 - L2 LINE L2 -1217 2097 1855 2083 81 4 0 chrX 134675692 134675952 -42298188 + AluSp SINE Alu 40 300 -13 319 206 44 29 chrX 134679184 134679252 -42294888 + MIR SINE MIR 14 82 -180 2312 56 0 18 chrX 134683491 134683805 -42290335 + AluY SINE Alu 1 309 0 2053 124 10 0 chrX 134685147 134685437 -42288703 + AluSx SINE Alu 3 295 -17 252 86 0 0 chrX 134685460 134685495 -42288645 + (GA)n Simple_repeat Simple_repeat 1 35 0 1573 159 146 17 chrX 134686016 134686318 -42287822 + MER2 DNA MER2_type 4 344 0 337 178 56 47 chrX 134687681 134687788 -42286352 - MIR SINE MIR -52 210 103 872 219 56 0 chrX 134688011 134688207 -42285933 + MIR SINE MIR 5 211 -51 367 275 44 81 chrX 134688257 134688417 -42285723 - MIR SINE MIR -87 175 22 981 126 6 6 chrX 134688670 134688829 -42285311 + L1MA9 LINE L1 5929 6087 -225 830 109 17 17 chrX 134688829 134688948 -42285192 - MER2 DNA MER2_type 0 345 227 1485 149 4 8 chrX 134689014 134689262 -42284878 - MER2 DNA MER2_type -92 253 7 1092 95 154 5 chrX 134689267 134689465 -42284675 + L1MA9 LINE L1 6083 6312 0 378 357 40 46 chrX 134690232 134690627 -42283513 - L2 LINE L2 -624 2690 2298 648 167 33 42 chrX 134690649 134690799 -42283341 + FRAM SINE Alu 1 40 0 251 54 27 0 chrX 134691390 134691427 -42282713 + (TC)n Simple_repeat Simple_repeat 1 38 0 1004 161 0 6 chrX 134692790 134692951 -42281189 + AluJb SINE Alu 136 295 -17 277 220 0 0 chrX 134694272 134694322 -42279818 + LTR67 LTR ERVL 96 145 -412 843 191 108 16 chrX 134694708 134694902 -42279238 - MIR SINE MIR -30 232 21 604 300 136 13 chrX 134694959 134695342 -42278798 + L2 LINE L2 1879 2308 -1006 1999 96 3 51 chrX 134695515 134695807 -42278333 + AluSc SINE Alu 1 278 -31 719 16 78 0 chrX 134695809 134695938 -42278202 + (TA)n Simple_repeat Simple_repeat 2 140 0 435 343 87 5 chrX 134696302 134696353 -42277787 - MIR SINE MIR -37 225 180 2070 133 0 3 chrX 134696353 134696653 -42277487 - AluSx SINE Alu -13 299 1 435 343 87 5 chrX 134696653 134696808 -42277332 - MIR SINE MIR -82 180 2 379 333 81 0 chrX 134697581 134697704 -42276436 - L2 LINE L2 0 3272 3140 189 275 87 54 chrX 134697742 134697891 -42276249 - L2 LINE L2 -284 2988 2835 752 283 75 41 chrX 134697935 134698324 -42275816 - L2 LINE L2 -625 2689 2288 477 0 0 0 chrX 134699152 134699205 -42274935 + (TG)n Simple_repeat Simple_repeat 2 54 0 252 218 0 0 chrX 134699262 134699349 -42274791 + GA-rich Low_complexity Low_complexity 2 88 0 437 271 116 7 chrX 134700395 134700550 -42273590 + MIR SINE MIR 25 196 -66 267 234 120 46 chrX 134701819 134701975 -42272165 - MIR SINE MIR -65 197 18 209 182 0 0 chrX 134702096 134702129 -42272011 + (CA)n Simple_repeat Simple_repeat 1 33 0 1125 279 48 78 chrX 134703871 134704413 -42269727 + L3 LINE CR1 1038 1563 -14 204 254 0 36 chrX 134705144 134705199 -42268941 - MIR SINE MIR -136 72 20 564 292 14 7 chrX 134706681 134706825 -42267315 + L3 LINE CR1 1416 1560 -17 633 183 50 0 chrX 134707440 134707560 -42266580 - MIR3 SINE MIR -2 206 81 204 228 0 0 chrX 134708757 134708814 -42265326 + (TG)n Simple_repeat Simple_repeat 2 58 0 760 217 152 5 chrX 134710548 134710746 -42263394 - MIR SINE MIR -21 241 15 183 42 0 0 chrX 134711240 134711264 -42262876 + (T)n Simple_repeat Simple_repeat 1 24 0 575 304 18 14 chrX 134711863 134712083 -42262057 + MIR3 SINE MIR 1 218 -44 685 302 84 80 chrX 134712790 134713673 -42260467 + L2 LINE L2 1801 2686 -628 2026 120 0 18 chrX 134714558 134714871 -42259269 - AluSg SINE Alu 0 308 1 2084 123 0 7 chrX 134714936 134715236 -42258904 - AluSx SINE Alu -10 302 5 183 42 0 0 chrX 134715337 134715361 -42258779 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 188 300 0 0 chrX 134715373 134715423 -42258717 + L2 LINE L2 3223 3272 0 225 204 46 130 chrX 134716332 134716440 -42257700 - HAL1 LINE L1 -1 2506 2408 800 201 90 59 chrX 134716512 134716801 -42257339 - L1MC4a LINE L1 -298 5876 5649 505 254 47 41 chrX 134717147 134717316 -42256824 - L2 LINE L2 -1 3271 3102 186 43 0 0 chrX 134717380 134717403 -42256737 + (GGGTG)n Simple_repeat Simple_repeat 4 26 0 318 322 147 32 chrX 134718132 134718446 -42255694 - L2 LINE L2 -4 3268 2919 2174 123 7 0 chrX 134718753 134719055 -42255085 - AluSx SINE Alu -8 304 1 452 223 29 10 chrX 134719476 134719579 -42254561 - MIR SINE MIR -83 125 21 26 0 0 0 chrX 134719792 134719818 -42254322 + AT_rich Low_complexity Low_complexity 1 26 0 2442 85 7 0 chrX 134720072 134720377 -42253763 - AluSq SINE Alu -6 307 1 1980 193 58 48 chrX 134720826 134721288 -42252852 + MLT1C LTR MaLR 1 467 0 412 248 128 0 chrX 134721427 134721568 -42252572 + L1ME4a LINE L1 5951 6109 -12 185 94 31 0 chrX 134721588 134721620 -42252520 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 424 55 18 0 chrX 134721630 134721685 -42252455 - MADE1 DNA Mariner -24 56 1 208 224 0 41 chrX 134721976 134722025 -42252115 - MIR SINE MIR -142 120 74 676 155 0 47 chrX 134722059 134722188 -42251952 + L2 LINE L2 3191 3313 0 2318 113 3 0 chrX 134724621 134724930 -42249210 - AluSx SINE Alu -2 310 1 418 326 93 27 chrX 134724974 134725416 -42248724 + L1M4 LINE L1 3521 3991 -2155 347 235 191 0 chrX 134725442 134725557 -42248583 + MIR SINE MIR 73 209 -53 1510 175 61 46 chrX 134725753 134725908 -42248232 - MER65C LTR ERV1 0 461 310 1204 118 0 18 chrX 134725908 134726077 -42248063 + FRAM SINE Alu 1 166 0 1510 175 61 46 chrX 134726077 134726320 -42247820 - MER65C LTR ERV1 -151 310 1 246 158 0 0 chrX 134726441 134726479 -42247661 + MER5B DNA MER1_type 1 38 -140 190 286 0 0 chrX 134726483 134726525 -42247615 - MER5B DNA MER1_type -131 47 6 469 311 106 0 chrX 134726957 134727137 -42247003 + MIR SINE MIR 37 235 -27 1347 169 21 4 chrX 134727234 134727470 -42246670 - MLT1E1 LTR MaLR -413 241 2 1818 121 72 13 chrX 134727478 134727784 -42246356 - Tigger2 DNA MER2_type 0 2718 2395 303 170 38 0 chrX 134727767 134727820 -42246320 + MER8 DNA MER2_type 185 239 0 * 206 302 0 0 chrX 134727837 134727890 -42246250 + L2 LINE L2 3182 3234 -79 1002 162 10 20 chrX 134728547 134728744 -42245396 - L1MB7 LINE L1 -9 6175 5981 379 256 90 24 chrX 134728805 134728928 -42245212 + MIR3 SINE MIR 25 155 -53 186 306 45 45 chrX 134729013 134729124 -42245016 + L2 LINE L2 2948 3058 -214 258 349 92 0 chrX 134729447 134729556 -42244584 - MIR SINE MIR -138 124 6 609 156 104 7 chrX 134729967 134730102 -42244038 - L1ME4a LINE L1 -4 6117 5970 244 241 176 43 chrX 134731188 134731375 -42242765 - L1ME4a LINE L1 -65 6056 5845 225 0 0 0 chrX 134733035 134733060 -42241080 + (T)n Simple_repeat Simple_repeat 1 25 0 295 246 180 41 chrX 134733450 134733572 -42240568 - MER5A DNA MER1_type -44 145 7 219 279 16 0 chrX 134733598 134733659 -42240481 - MIR SINE MIR -57 151 90 2214 127 23 144 chrX 134734183 134734670 -42239470 - MLT1C LTR MaLR -1 466 39 185 375 0 0 chrX 134734822 134734886 -42239254 - MER5A DNA MER1_type -41 148 85 772 196 238 23 chrX 134735953 134736167 -42237973 - MIR SINE MIR -1 261 2 2404 147 0 6 chrX 134736268 134736615 -42237525 + MER7A DNA MER2_type 1 343 -3 513 234 156 6 chrX 134736956 134737134 -42237006 + MIR SINE MIR 40 241 -21 191 192 39 103 chrX 134737477 134737555 -42236585 + MIR SINE MIR 114 186 -76 3100 101 14 0 chrX 134737817 134738242 -42235898 + L1MA2 LINE L1 5874 6304 0 907 252 69 36 chrX 134738464 134738770 -42235370 - L2 LINE L2 -1 3312 2997 593 254 32 32 chrX 134739790 134739975 -42234165 - MIR SINE MIR -23 239 55 201 330 0 29 chrX 134740956 134741059 -42233081 + L3b LINE CR1 1259 1358 -225 1638 154 68 3 chrX 134741183 134741475 -42232665 + AluJo SINE Alu 1 311 -1 568 314 20 47 chrX 134741912 134742167 -42231973 - MIR SINE MIR -14 248 1 1091 133 0 0 chrX 134742305 134742455 -42231685 + AluSq/x SINE Alu 1 150 -162 606 203 117 18 chrX 134742524 134742687 -42231453 + MIR SINE MIR 83 261 -1 219 139 0 0 chrX 134742687 134742723 -42231417 + (CAT)n Simple_repeat Simple_repeat 1 36 0 1925 122 0 72 chrX 134742770 134743090 -42231050 - AluSx SINE Alu -15 297 1 1462 123 85 0 chrX 134743802 134744014 -42230126 + MER30 DNA MER1_type 1 230 0 1025 182 30 72 chrX 134744047 134744102 -42230038 - MIR SINE MIR -18 244 188 734 188 5 91 chrX 134744102 134744150 -42229990 + MER104 DNA MER2_type 1 52 -1846 2072 113 32 0 chrX 134744150 134744294 -42229846 - AluSx SINE Alu -19 293 155 194 0 39 0 chrX 134744294 134744320 -42229820 + (CACAC)n Simple_repeat Simple_repeat 3 29 0 2072 113 32 0 chrX 134744320 134744459 -42229681 - AluSx SINE Alu -157 155 1 734 188 5 91 chrX 134744459 134744607 -42229533 + MER104 DNA MER2_type 52 180 0 1025 182 30 72 chrX 134744607 134744787 -42229353 - MIR SINE MIR -74 188 19 230 200 0 0 chrX 134745826 134745871 -42228269 - L1MA9 LINE L1 -38 6274 6230 1972 124 4 0 chrX 134745903 134746176 -42227964 + AluSx SINE Alu 1 274 -38 2122 113 0 3 chrX 134746457 134746748 -42227392 + AluSx SINE Alu 2 291 -21 2001 129 61 21 chrX 134746943 134747188 -42226952 - MER44D DNA MER2_type -1882 609 375 2271 110 7 0 chrX 134747188 134747498 -42226642 - AluSx SINE Alu 0 312 1 2001 129 61 21 chrX 134747498 134747578 -42226562 - MER44D DNA MER2_type -2116 375 1 1465 199 17 40 chrX 134748024 134748226 -42225914 - L1MB7 LINE L1 -77 6107 5914 1779 154 0 42 chrX 134748226 134748338 -42225802 + AluSx SINE Alu 10 125 -219 189 0 0 0 chrX 134748338 134748359 -42225781 + (TA)n Simple_repeat Simple_repeat 2 22 0 1779 154 0 42 chrX 134748359 134748593 -42225547 + AluSx SINE Alu 125 344 0 1465 199 17 40 chrX 134748593 134748736 -42225404 - L1MB7 LINE L1 -270 5914 5769 313 299 75 29 chrX 134750677 134750851 -42223289 - L1ME4a LINE L1 -3 6118 5937 1281 112 28 0 chrX 134750867 134751046 -42223094 + AluSg/x SINE Alu 118 301 -11 290 261 108 87 chrX 134751075 134751219 -42222921 + L1MC4 LINE L1 7706 7858 -184 4960 117 55 29 chrX 134751219 134751978 -42222162 + MER4E LTR ERV1 1 779 0 290 261 108 87 chrX 134751978 134752074 -42222066 + L1MC4 LINE L1 7858 7951 -91 21 0 0 0 chrX 134752086 134752107 -42222033 + AT_rich Low_complexity Low_complexity 1 21 0 283 316 25 13 chrX 134752107 134752186 -42221954 + MER5A DNA MER1_type 15 94 -95 315 0 0 0 chrX 134752283 134752318 -42221822 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 864 137 15 0 chrX 134752453 134752584 -42221556 - AluJb SINE Alu -179 133 1 464 324 15 23 chrX 134752593 134752855 -42221285 - L1MC4a LINE L1 -1817 5991 5732 428 297 136 30 chrX 134753932 134754109 -42220031 + MIR SINE MIR 2 165 -97 346 244 0 0 chrX 134754109 134754187 -42219953 - MER116 DNA Mariner -1 79 2 428 297 136 30 chrX 134754187 134754286 -42219854 + MIR SINE MIR 165 252 -10 384 250 57 64 chrX 134754371 134754511 -42219629 + L2 LINE L2 3109 3247 -25 1025 266 120 37 chrX 134755795 134756363 -42217777 + MLT1L LTR MaLR 1 615 0 650 210 96 6 chrX 134756438 134756595 -42217545 + MIR SINE MIR 22 192 -70 3069 15 0 0 chrX 134756726 134757055 -42217085 - L1PA2 LINE L1 -2 6153 5825 659 308 26 18 chrX 134757624 134757851 -42216289 - MIR SINE MIR -32 230 2 544 215 128 100 chrX 134757933 134758184 -42215956 - MIR SINE MIR 0 262 5 204 253 121 22 chrX 134758279 134758370 -42215770 + L2 LINE L2 3214 3313 0 256 117 17 17 chrX 134758481 134758541 -42215599 + (TA)n Simple_repeat Simple_repeat 2 61 0 305 190 76 25 chrX 134759185 134759264 -42214876 + MIR3 SINE MIR 98 180 -28 247 260 0 14 chrX 134759441 134759514 -42214626 - MLT1K LTR MaLR 0 588 517 270 0 0 0 chrX 134759514 134759544 -42214596 + (A)n Simple_repeat Simple_repeat 1 30 0 286 237 26 0 chrX 134759623 134759699 -42214441 + CT-rich Low_complexity Low_complexity 1 78 0 323 235 0 0 chrX 134759847 134759915 -42214225 - MLT1K LTR MaLR -325 263 196 286 327 0 37 chrX 134760581 134760688 -42213452 - L3 LINE CR1 -4 1573 1471 532 331 63 55 chrX 134760804 134761281 -42212859 - L2 LINE L2 -18 3254 2769 264 122 0 0 chrX 134761374 134761415 -42212725 + (CA)n Simple_repeat Simple_repeat 2 42 0 302 230 50 129 chrX 134761467 134761544 -42212596 - L2 LINE L2 -4 3309 3246 2710 188 22 2 chrX 134761544 134762002 -42212138 + MLT1C LTR MaLR 1 467 0 302 230 50 129 chrX 134762002 134762063 -42212077 - L2 LINE L2 -67 3246 3182 824 149 0 0 chrX 134762072 134762186 -42211954 + AluJb SINE Alu 2 115 -197 2578 261 32 55 chrX 134762186 134763175 -42210965 + L2 LINE L2 2131 3093 -220 1265 157 54 114 chrX 134763751 134763906 -42210234 + L1MDb LINE L1 793 956 -5453 558 140 0 0 chrX 134763906 134763999 -42210141 + L1MA5 LINE L1 6208 6300 0 1265 157 54 114 chrX 134763999 134764212 -42209928 + L1MDb LINE L1 956 1139 -5270 4109 213 59 47 chrX 134764234 134766229 -42207911 + L1MDb LINE L1 1307 3276 -3130 2357 93 3 0 chrX 134766229 134766529 -42207611 + AluSp SINE Alu 1 301 -12 4109 213 59 47 chrX 134766529 134766622 -42207518 + L1MDb LINE L1 3276 3366 -3040 1138 163 0 22 chrX 134766622 134766800 -42207340 + FAM SINE Alu 2 175 0 4109 213 59 47 chrX 134766800 134766918 -42207222 + L1MDb LINE L1 3366 3639 -2767 1355 209 83 26 chrX 134766933 134767283 -42206857 + L1MD2 LINE L1 5708 6077 -282 995 155 11 11 chrX 134767283 134767464 -42206676 - AluJo/FRAM SINE Alu 0 312 132 361 159 8 90 chrX 134767465 134767530 -42206610 - FLAM_A SINE Alu -169 133 64 2245 113 0 16 chrX 134767530 134767848 -42206292 - AluSq SINE Alu 0 313 1 2187 99 0 10 chrX 134767848 134768299 -42205841 - AluSx SINE Alu 0 312 1 361 159 8 90 chrX 134768299 134768389 -42205751 - FLAM_A SINE Alu -121 181 85 393 209 116 0 chrX 134768389 134768475 -42205665 + L1MD2 LINE L1 6090 6185 -174 283 275 92 33 chrX 134768475 134768595 -42205545 + MIR SINE MIR 118 244 -18 197 298 57 64 chrX 134769787 134769928 -42204212 + L2 LINE L2 2977 3116 -156 1835 149 0 50 chrX 134769959 134770261 -42203879 + AluSx SINE Alu 1 287 -25 460 197 56 56 chrX 134770289 134770431 -42203709 + L2 LINE L2 3168 3309 -4 1797 150 4 7 chrX 134770511 134770791 -42203349 + AluJb SINE Alu 2 280 -32 324 0 0 0 chrX 134770792 134770828 -42203312 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 219 200 73 82 chrX 134771727 134771837 -42202303 + L2 LINE L2 2987 3095 -177 337 261 127 102 chrX 134771950 134772126 -42202014 + L2 LINE L2 2972 3159 -113 1961 209 31 14 chrX 134772126 134772551 -42201589 + MER63B DNA MER1_type 5 436 0 337 261 127 102 chrX 134772551 134772657 -42201483 + L2 LINE L2 3159 3261 -11 192 77 0 0 chrX 134774298 134774324 -42199816 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 4051 121 24 43 chrX 134774970 134775438 -42198702 - Tigger3b DNA MER2_type -1797 1231 779 1791 191 0 0 chrX 134775438 134775726 -42198414 + AluJo SINE Alu 1 288 -24 4051 121 24 43 chrX 134775726 134775953 -42198187 - Tigger3b DNA MER2_type -2249 779 549 634 160 10 0 chrX 134775955 134776055 -42198085 - U6 snRNA snRNA -6 101 1 3358 139 16 38 chrX 134776057 134776633 -42197507 - Tigger3b DNA MER2_type -668 563 1 607 260 8 0 chrX 134776646 134776773 -42197367 + MER5B DNA MER1_type 2 129 -49 249 129 16 97 chrX 134776830 134776892 -42197248 + MER5B DNA MER1_type 119 175 -3 2380 160 8 6 chrX 134777017 134777379 -42196761 - MLT1A1 LTR MaLR -2 363 1 253 406 104 0 chrX 134778327 134778539 -42195601 - L2 LINE L2 -339 2975 2742 826 239 11 0 chrX 134778539 134778715 -42195425 - MER5B DNA MER1_type 0 178 1 858 289 112 58 chrX 134778715 134778976 -42195164 - L2 LINE L2 -565 2749 2504 3563 170 17 15 chrX 134778976 134779630 -42194510 + L1MB7 LINE L1 5514 6168 -16 858 289 112 58 chrX 134779630 134780036 -42194104 - L2 LINE L2 -810 2504 2046 843 170 0 7 chrX 134780550 134780685 -42193455 + FLAM_C SINE Alu 2 135 -8 746 264 141 5 chrX 134780686 134780906 -42193234 - MIR SINE MIR -6 256 7 535 253 64 59 chrX 134780932 134781134 -42193006 + MIR SINE MIR 2 204 -58 358 309 79 0 chrX 134781271 134781397 -42192743 + L2 LINE L2 3103 3238 -34 700 314 23 12 chrX 134782276 134782534 -42191606 + MIR SINE MIR 2 262 0 180 239 22 0 chrX 134782896 134782942 -42191198 - MIR SINE MIR -80 128 82 267 161 274 0 chrX 134783063 134783125 -42191015 - L2 LINE L2 -58 3214 3136 692 281 15 10 chrX 134784603 134784799 -42189341 + MIR SINE MIR 13 209 -53 650 193 9 0 chrX 134784806 134784915 -42189225 + MER81 DNA DNA 5 114 0 198 0 0 0 chrX 134785247 134785269 -42188871 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2476 81 0 0 chrX 134785663 134785973 -42188167 + AluY SINE Alu 1 310 -1 428 295 198 0 chrX 134786061 134786278 -42187862 + MIR SINE MIR 3 262 0 * 645 250 0 14 chrX 134786276 134786416 -42187724 + L2 LINE L2 3176 3313 0 850 188 6 24 chrX 134786520 134786690 -42187450 + MIR SINE MIR 37 203 -59 213 163 23 23 chrX 134787046 134787089 -42187051 + MIR SINE MIR 217 259 -3 1126 174 87 5 chrX 134787140 134787347 -42186793 - MER58A DNA MER1_type 0 224 1 389 320 22 73 chrX 134787868 134788046 -42186094 - L2 LINE L2 0 3272 3104 1368 263 125 18 chrX 134788985 134789504 -42184636 - L1MC4a LINE L1 -724 5450 5278 1645 173 13 39 chrX 134789589 134789895 -42184245 - AluJo SINE Alu -14 298 1 242 401 0 28 chrX 134790191 134790333 -42183807 - L2 LINE L2 -10 3262 3125 292 170 57 0 chrX 134790451 134790504 -42183636 - MER58 DNA MER1_type -1 2419 2364 1078 182 50 0 chrX 134790525 134790723 -42183417 - MER58 DNA MER1_type -133 208 1 214 186 72 113 chrX 134791172 134791269 -42182871 - MIR SINE MIR -51 211 119 219 355 0 0 chrX 134791389 134791465 -42182675 - MIR SINE MIR -13 249 174 706 276 58 16 chrX 134791489 134791732 -42182408 + MIR SINE MIR 10 262 0 4275 212 64 30 chrX 134791846 134792876 -42181264 - L1MD2 LINE L1 -49 6704 5711 2112 188 59 9 chrX 134792876 134793317 -42180823 + MLT1C LTR MaLR 1 463 -4 4275 212 64 30 chrX 134793317 134793673 -42180467 - L1MD2 LINE L1 -1042 5711 5369 2244 96 24 0 chrX 134793673 134793965 -42180175 + AluSx SINE Alu 1 299 -13 1904 114 4 8 chrX 134793966 134794230 -42179910 + AluSq SINE Alu 30 292 -21 4275 212 64 30 chrX 134794230 134794748 -42179392 - L1MD2 LINE L1 -1383 5370 4730 790 148 99 14 chrX 134794796 134794837 -42179303 + Tigger7 DNA MER2_type 2332 2368 -119 186 43 0 0 chrX 134794837 134794860 -42179280 + (TATG)n Simple_repeat Simple_repeat 2 24 0 790 148 99 14 chrX 134794860 134794960 -42179180 + Tigger7 DNA MER2_type 2368 2485 -2 3138 228 43 74 chrX 134794977 134795223 -42178917 - L1MD2 LINE L1 -1827 4713 4461 1340 111 183 38 chrX 134795223 134795485 -42178655 - AluSg1 SINE Alu -9 300 1 3467 92 2 2 chrX 134795485 134795932 -42178208 - L1PA13 LINE L1 -9 6154 5708 3138 228 43 74 chrX 134795932 134796450 -42177690 - L1MD2 LINE L1 -2078 4462 3994 1974 135 21 0 chrX 134796450 134796739 -42177401 + AluSx SINE Alu 1 295 -17 3138 228 43 74 chrX 134796739 134797130 -42177010 - L1MD2 LINE L1 -2546 3994 3592 3176 218 74 32 chrX 134797138 134798101 -42176039 - L1MD2 LINE L1 -4704 1836 834 1186 268 59 55 chrX 134798271 134798739 -42175401 - L1MD2 LINE L1 -5980 560 95 401 0 20 0 chrX 134798739 134798788 -42175352 + (TG)n Simple_repeat Simple_repeat 2 51 0 1559 187 0 4 chrX 134798788 134799055 -42175085 - AluJo SINE Alu -26 286 21 1186 268 59 55 chrX 134799055 134799126 -42175014 - L1MD2 LINE L1 -6444 96 18 790 141 0 25 chrX 134799127 134799248 -42174892 + FLAM_C SINE Alu 15 132 -11 275 215 0 31 chrX 134799440 134799505 -42174635 - MIR SINE MIR 0 262 200 1574 213 47 3 chrX 134799522 134799842 -42174298 + MER46C DNA MER2_type 2 335 -3 390 296 0 0 chrX 134800387 134800485 -42173655 - L2 LINE L2 0 3272 3175 621 286 6 17 chrX 134800881 134801056 -42173084 + MER5B DNA MER1_type 6 178 0 254 235 86 49 chrX 134801142 134801223 -42172917 - MIR SINE MIR -4 258 175 245 11 0 213 chrX 134801338 134801432 -42172708 + (TA)n Simple_repeat Simple_repeat 2 75 0 518 231 60 17 chrX 134801561 134801678 -42172462 - MIR SINE MIR -80 182 61 1486 185 105 40 chrX 134801710 134802061 -42172079 + MLT1A2 LTR MaLR 1 374 0 219 337 84 0 chrX 134802061 134802156 -42171984 + L2 LINE L2 3166 3268 -4 2301 80 7 0 chrX 134802459 134802747 -42171393 - AluSp SINE Alu -23 290 1 286 306 102 0 chrX 134804145 134804302 -42169838 - HERVL74 LTR ERVL -4446 1239 1067 2789 134 24 24 chrX 134805032 134805457 -42168683 + MSTB LTR MaLR 2 426 0 790 182 4 12 chrX 134806271 134806531 -42167609 + GA-rich Low_complexity Low_complexity 1 257 0 201 129 0 0 chrX 134806534 134806565 -42167575 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 646 153 99 0 chrX 134807217 134807328 -42166812 - MER45A DNA AcHobo 0 178 57 * 779 234 0 0 chrX 134807312 134807449 -42166691 - MER45A DNA AcHobo -40 138 2 1273 197 47 17 chrX 134811782 134811961 -42162179 + L1MA4 LINE L1 5990 6183 -117 2137 121 0 13 chrX 134811961 134812267 -42161873 + AluSx SINE Alu 1 302 -10 1273 197 47 17 chrX 134812267 134812387 -42161753 + L1MA4 LINE L1 6183 6298 -2 242 299 12 19 chrX 134812577 134812663 -42161477 + MIR SINE MIR 9 91 -117 2598 156 48 2 chrX 134812663 134813100 -42161040 - LTR32 LTR ERVL 0 471 15 482 308 41 12 chrX 134813100 134813272 -42160868 + MIR SINE MIR 86 262 0 276 204 352 0 chrX 134814973 134815081 -42159059 + MIR SINE MIR 6 151 -111 2075 133 0 16 chrX 134815356 134815673 -42158467 - AluSx SINE Alu 0 312 1 999 178 0 22 chrX 134815673 134815853 -42158287 - FRAM SINE Alu -4 172 1 1723 239 61 26 chrX 134816444 134816984 -42157156 - L1ME1 LINE L1 -5 6161 5603 1208 151 16 0 chrX 134818124 134818309 -42155831 + MER5A DNA MER1_type 2 189 0 592 257 29 18 chrX 134818936 134819107 -42155033 + MIR3 SINE MIR 36 208 0 2516 72 0 7 chrX 134820386 134820691 -42153449 + AluSx SINE Alu 1 303 -9 252 318 0 0 chrX 134823305 134823368 -42150772 + L3 LINE CR1 1512 1574 -3 670 203 120 0 chrX 134823867 134824000 -42150140 + MIR SINE MIR 2 150 -112 207 340 20 10 chrX 134824195 134824295 -42149845 - MIR3 SINE MIR -7 201 101 291 121 0 0 chrX 134825158 134825216 -42148924 + (T)n Simple_repeat Simple_repeat 1 58 0 21 36 0 0 chrX 134826684 134826712 -42147428 + AT_rich Low_complexity Low_complexity 1 28 0 625 177 105 0 chrX 134829340 134829521 -42144619 + Charlie1 DNA MER1_type 2562 2761 0 329 277 0 0 chrX 134829575 134829658 -42144482 + L2 LINE L2 3176 3258 -14 246 62 0 0 chrX 134830619 134830651 -42143489 + (CGG)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chrX 134830824 134830865 -42143275 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chrX 134833403 134833425 -42140715 + AT_rich Low_complexity Low_complexity 1 22 0 834 207 6 11 chrX 134834478 134834657 -42139483 + MER58A DNA MER1_type 47 224 0 303 308 67 10 chrX 134835574 134835678 -42138462 - MIR3 SINE MIR -7 201 92 * 683 310 56 4 chrX 134835676 134835908 -42138232 - MIR SINE MIR -3 259 16 28 29 0 0 chrX 134835937 134835972 -42138168 + AT_rich Low_complexity Low_complexity 1 35 0 2084 112 0 3 chrX 134837137 134837447 -42136693 - AluSx SINE Alu 0 309 1 1039 132 31 13 chrX 134838903 134839091 -42135049 + AluSg/x SINE Alu 118 308 0 615 254 149 0 chrX 134839626 134839807 -42134333 + L2 LINE L2 3105 3312 -1 750 165 188 0 chrX 134840128 134840304 -42133836 - MER3 DNA MER1_type 0 209 1 1242 117 0 6 chrX 134840687 134840858 -42133282 + AluSg/x SINE Alu 133 302 -10 23 0 0 0 chrX 134841340 134841363 -42132777 + AT_rich Low_complexity Low_complexity 1 23 0 747 252 52 19 chrX 134842893 134843103 -42131037 - MIR SINE MIR -44 218 2 29 28 0 0 chrX 134843608 134843644 -42130496 + AT_rich Low_complexity Low_complexity 1 36 0 216 179 0 0 chrX 134846880 134846919 -42127221 + (TG)n Simple_repeat Simple_repeat 1 39 0 444 83 0 0 chrX 134849000 134849060 -42125080 + L2 LINE L2 3254 3313 0 215 204 0 37 chrX 134849113 134849167 -42124973 + L2 LINE L2 659 710 -2604 933 307 141 32 chrX 134849168 134849990 -42124150 + L2 LINE L2 2384 3283 -30 270 242 168 11 chrX 134850764 134850859 -42123281 - L2 LINE L2 -2619 695 586 1541 264 82 25 chrX 134850980 134851698 -42122442 - L2 LINE L2 -35 3278 2511 257 196 0 0 chrX 134852142 134852188 -42121952 - Tigger6b DNA MER2_type -735 862 817 2670 253 35 82 chrX 134852420 134853374 -42120766 - L2 LINE L2 -548 2766 1883 2203 114 7 3 chrX 134853374 134853672 -42120468 + AluSx SINE Alu 7 305 -7 2670 253 35 82 chrX 134853672 134853964 -42120176 - L2 LINE L2 -1431 1883 1579 814 190 86 0 chrX 134854431 134854605 -42119535 - MER5A DNA MER1_type 0 189 1 226 128 64 77 chrX 134854827 134854905 -42119235 - L1MA10 LINE L1 -133 6201 6125 385 139 111 37 chrX 134854922 134855030 -42119110 + L1MA9 LINE L1 6139 6254 -58 2473 67 0 13 chrX 134855031 134855347 -42118793 + AluSx SINE Alu 1 312 0 740 159 0 0 chrX 134855635 134855761 -42118379 - L1MA9 LINE L1 -173 6139 6014 2550 48 0 13 chrX 134856013 134856328 -42117812 + AluY SINE Alu 1 311 0 26 0 0 0 chrX 134856686 134856712 -42117428 + AT_rich Low_complexity Low_complexity 1 26 0 631 261 84 34 chrX 134856813 134857231 -42116909 - L1P5 LINE L1 -549 5607 5191 1620 263 158 17 chrX 134857457 134857527 -42116613 - L2 LINE L2 -922 2392 2333 2674 45 3 0 chrX 134857527 134857839 -42116301 + AluSp SINE Alu 1 313 0 1620 263 158 17 chrX 134857839 134858459 -42115681 - L2 LINE L2 -981 2333 1605 389 330 0 26 chrX 134858686 134858953 -42115187 - HAL1 LINE L1 -1399 1108 849 552 237 58 7 chrX 134859679 134859818 -42114322 + MIR SINE MIR 90 235 -27 185 139 0 83 chrX 134860057 134860093 -42114047 - L3 LINE CR1 -16 1561 1529 * 465 314 70 0 chrX 134860065 134860221 -42113919 - MIR3 SINE MIR -25 183 17 1328 304 51 85 chrX 134860279 134861370 -42112770 + L2 LINE L2 1469 2498 -774 1923 163 0 19 chrX 134861370 134861677 -42112463 - AluJo SINE Alu -11 301 1 1328 304 51 85 chrX 134861677 134862262 -42111878 + L2 LINE L2 2498 3102 -170 726 298 73 26 chrX 134862389 134862536 -42111604 - L2 LINE L2 -115 3198 3059 1346 67 63 88 chrX 134862536 134862583 -42111557 + L1PA15 LINE L1 5929 5976 -189 2439 97 0 0 chrX 134862583 134862892 -42111248 + AluSg SINE Alu 2 310 0 1346 67 63 88 chrX 134862892 134863082 -42111058 + L1PA15 LINE L1 5976 6160 -5 726 298 73 26 chrX 134863082 134863340 -42110800 - L2 LINE L2 -254 3059 2782 1650 125 60 73 chrX 134863357 134863475 -42110665 - L1MA4A LINE L1 -4 6299 6181 1894 149 23 3 chrX 134863475 134863498 -42110642 - AluJb SINE Alu -4 308 287 420 20 0 0 chrX 134863498 134863547 -42110593 + (TG)n Simple_repeat Simple_repeat 2 50 0 1894 149 23 3 chrX 134863547 134863825 -42110315 - AluJb SINE Alu -25 287 1 1650 125 60 73 chrX 134863825 134864075 -42110065 - L1MA4A LINE L1 -122 6181 5936 570 302 41 25 chrX 134864075 134864320 -42109820 - L2 LINE L2 -565 2749 2501 1345 259 128 25 chrX 134864325 134864856 -42109284 + L2 LINE L2 2733 3309 -4 200 267 215 30 chrX 134864833 134864968 -42109172 - L2 LINE L2 -796 2518 2359 * 1023 35 28 0 chrX 134865850 134865993 -42108147 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 600 274 107 19 chrX 134867097 134867312 -42106828 + MIR SINE MIR 15 248 -14 2610 188 29 25 chrX 134867426 134868023 -42106117 - L1ME2 LINE L1 -7 6157 5559 219 350 100 0 chrX 134868131 134868211 -42105929 - L2 LINE L2 -47 3225 3138 309 337 0 0 chrX 134868482 134868565 -42105575 - L2 LINE L2 -9 3304 3222 768 312 87 22 chrX 134869685 134870131 -42104009 + L2 LINE L2 2839 3313 0 22 35 0 0 chrX 134870274 134870303 -42103837 + AT_rich Low_complexity Low_complexity 1 29 0 1867 183 0 10 chrX 134870364 134870665 -42103475 + AluJb SINE Alu 1 298 -14 1867 176 0 19 chrX 134870830 134871142 -42102998 - AluJo SINE Alu -6 306 1 180 111 0 0 chrX 134871144 134871171 -42102969 + (TTA)n Simple_repeat Simple_repeat 3 29 0 1207 130 80 42 chrX 134871478 134871740 -42102400 + ORSL DNA AcHobo 3 274 -1 356 274 39 0 chrX 134872439 134872541 -42101599 + L2 LINE L2 1037 1142 -2172 4204 240 71 18 chrX 134872541 134874035 -42100105 + L2 LINE L2 1739 3312 -1 699 216 139 21 chrX 134874105 134874299 -42099841 + MIR SINE MIR 24 240 -22 846 200 84 5 chrX 134875692 134875907 -42098233 + L1ME3A LINE L1 5924 6155 -15 491 257 44 7 chrX 134875927 134876063 -42098077 - MIR SINE MIR -108 154 14 714 238 77 17 chrX 134876145 134876380 -42097760 - MIR SINE MIR -1 261 13 1408 152 98 29 chrX 134876774 134877050 -42097090 + AluJo SINE Alu 1 295 -17 192 200 0 0 chrX 134877083 134877128 -42097012 + GA-rich Low_complexity Low_complexity 4 48 0 1233 251 63 30 chrX 134877305 134877764 -42096376 - L1ME4a LINE L1 -158 5963 5490 662 222 275 5 chrX 134877768 134877957 -42096183 + MIR SINE MIR 9 248 -14 628 232 278 5 chrX 134878317 134878511 -42095629 - MIR SINE MIR -3 259 13 207 250 0 0 chrX 134878554 134878638 -42095502 + (TG)n Simple_repeat Simple_repeat 2 85 0 550 329 42 25 chrX 134878651 134878937 -42095203 - L2 LINE L2 -3 3310 3020 215 215 190 0 chrX 134880838 134880917 -42093223 + MIR SINE MIR 88 181 -81 222 37 0 0 chrX 134881247 134881274 -42092866 + (TTCCC)n Simple_repeat Simple_repeat 2 28 0 2024 145 10 0 chrX 134881274 134881577 -42092563 - AluSx SINE Alu -6 306 1 185 233 0 0 chrX 134882944 134882987 -42091153 - L2 LINE L2 0 3313 3271 236 191 0 0 chrX 134883638 134883680 -42090460 - L2 LINE L2 -8 3305 3264 201 147 0 0 chrX 134884348 134884382 -42089758 + (T)n Simple_repeat Simple_repeat 1 34 0 664 249 10 58 chrX 134884780 134884985 -42089155 + MIR SINE MIR 47 241 -21 904 130 0 8 chrX 134885076 134885207 -42088933 + FLAM_C SINE Alu 2 131 -2 388 202 231 0 chrX 134885300 134885404 -42088736 + L2 LINE L2 3186 3313 0 186 329 177 0 chrX 134885805 134885884 -42088256 - MIR SINE MIR -9 253 161 183 264 113 0 chrX 134885898 134885951 -42088189 + L2 LINE L2 3214 3272 0 * 438 231 11 0 chrX 134885950 134886041 -42088099 - MIR SINE MIR -114 148 57 2523 77 0 3 chrX 134886575 134886888 -42087252 - AluSq SINE Alu -1 312 1 2836 316 125 16 chrX 134887306 134889301 -42084839 - L2 LINE L2 -43 3270 1062 537 306 63 10 chrX 134890078 134890284 -42083856 - MIR SINE MIR -33 229 13 13292 141 17 9 chrX 134891912 134893883 -42080257 - L1MA2 LINE L1 0 7723 5711 2453 33 40 13 chrX 134893883 134894185 -42079955 + AluY SINE Alu 1 310 -1 13292 141 17 9 chrX 134894185 134895602 -42078538 - L1MA2 LINE L1 -2012 5711 4307 * 22795 134 16 8 chrX 134895595 134899100 -42075040 - L1MA2 LINE L1 -4031 3534 4 3972 153 14 0 chrX 134899100 134899720 -42074420 - L1PA16 LINE L1 -4 6162 5534 546 251 80 68 chrX 134899945 134900108 -42074032 + MIR3 SINE MIR 22 186 -22 624 282 50 30 chrX 134900223 134900625 -42073515 + LTR16B LTR ERVL 1 464 0 358 248 76 9 chrX 134900949 134901054 -42073086 + MER5A DNA MER1_type 1 112 -77 2137 188 67 37 chrX 134901097 134901587 -42072553 - MLT1D LTR MaLR 0 505 1 832 269 60 31 chrX 134901716 134902066 -42072074 + L1ME4a LINE L1 5598 5957 -164 757 256 27 19 chrX 134902043 134902301 -42071839 + L1MC4a LINE L1 5665 5924 -1884 * 183 42 0 0 chrX 134902324 134902348 -42071792 + (TG)n Simple_repeat Simple_repeat 1 24 0 219 163 82 61 chrX 134902359 134902408 -42071732 + MER91B DNA MER1_type 28 77 -113 276 284 0 25 chrX 134902446 134902527 -42071613 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 213 94 0 0 chrX 134902597 134902629 -42071511 + (TG)n Simple_repeat Simple_repeat 1 32 0 396 0 0 0 chrX 134902732 134902776 -42071364 + (TG)n Simple_repeat Simple_repeat 1 44 0 1744 152 7 7 chrX 134902776 134903053 -42071087 - AluSx SINE Alu -33 279 3 210 238 343 9 chrX 134903461 134903566 -42070574 - MIR SINE MIR -10 252 113 621 219 134 16 chrX 134903613 134903800 -42070340 - MIR SINE MIR -6 256 48 1988 146 0 13 chrX 134903825 134904134 -42070006 - AluJo SINE Alu -7 305 1 951 110 0 143 chrX 134904535 134904687 -42069453 + L1MB2 LINE L1 5991 6163 -8 1781 165 7 0 chrX 134904687 134904972 -42069168 - AluJo SINE Alu -9 303 17 794 73 36 18 chrX 134904982 134905092 -42069048 - HY1 scRNA scRNA 0 112 1 951 110 0 143 chrX 134905092 134905137 -42069003 + L1MB2 LINE L1 6119 6169 -2 239 266 38 0 chrX 134905934 134906013 -42068127 + L1ME3A LINE L1 5893 5974 -196 515 263 80 36 chrX 134906017 134906344 -42067796 + L1M4 LINE L1 2800 3154 -2992 431 276 0 45 chrX 134906326 134906482 -42067658 + L1ME3A LINE L1 5962 6110 -60 * 249 51 103 13 chrX 134906547 134906625 -42067515 + (TA)n Simple_repeat Simple_repeat 1 85 0 305 267 22 0 chrX 134906626 134906716 -42067424 - L1MC4 LINE L1 -1339 6703 6612 42 0 0 0 chrX 134906718 134906760 -42067380 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chrX 134906776 134906809 -42067331 + AT_rich Low_complexity Low_complexity 1 33 0 400 84 103 0 chrX 134906809 134906964 -42067176 + (TTATA)n Simple_repeat Simple_repeat 4 174 0 658 69 0 129 chrX 134907014 134907130 -42067010 - L1MA1 LINE L1 -1 6301 6201 767 105 0 0 chrX 134907130 134907244 -42066896 + L1 LINE L1 4769 4882 -1264 270 260 0 0 chrX 134907333 134907383 -42066757 + L2 LINE L2 3206 3255 -17 650 193 9 0 chrX 134907656 134907765 -42066375 - MER81 DNA DNA 0 114 5 277 207 81 35 chrX 134907890 134907977 -42066163 + L1MC4 LINE L1 5752 5842 -1966 389 320 22 73 chrX 134908916 134909094 -42065046 + L2 LINE L2 3104 3272 0 1126 174 87 5 chrX 134909615 134909822 -42064318 + MER58A DNA MER1_type 1 224 0 213 163 23 23 chrX 134909873 134909916 -42064224 - MIR SINE MIR -3 259 217 850 188 6 24 chrX 134910272 134910442 -42063698 - MIR SINE MIR -59 203 37 638 234 0 8 chrX 134910546 134910670 -42063470 - L2 LINE L2 0 3313 3191 416 299 198 0 chrX 134910684 134910901 -42063239 - MIR SINE MIR 0 262 3 2490 78 0 0 chrX 134910989 134911298 -42062842 - AluY SINE Alu -2 309 1 198 0 0 0 chrX 134911692 134911714 -42062426 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2121 101 7 0 chrX 134912114 134912392 -42061748 + AluSx SINE Alu 1 280 -32 243 0 0 0 chrX 134912407 134912434 -42061706 + (TG)n Simple_repeat Simple_repeat 2 28 0 399 226 0 0 chrX 134912434 134912536 -42061604 + (TA)n Simple_repeat Simple_repeat 2 103 0 242 234 0 43 chrX 134912538 134912632 -42061508 + L1MC4 LINE L1 6614 6703 -1339 226 164 55 0 chrX 134912603 134912658 -42061482 + L1MCa LINE L1 2006 2063 -4363 * 229 261 0 43 chrX 134912650 134912742 -42061398 + L1MC4 LINE L1 6616 6703 -1339 369 198 0 0 chrX 134912743 134912824 -42061316 + (TA)n Simple_repeat Simple_repeat 2 82 0 1092 253 95 78 chrX 134912980 134913466 -42060674 + L2 LINE L2 923 1416 -1898 1620 217 32 215 chrX 134913469 134914827 -42059313 + L2 LINE L2 567 1433 -1881 2928 96 0 6 chrX 134914827 134915193 -42058947 + THE1B LTR MaLR 1 364 0 1620 217 32 215 chrX 134915193 134915862 -42058278 + L2 LINE L2 1433 2223 -1091 840 279 18 9 chrX 134917106 134917328 -42056812 - MIR SINE MIR -3 259 36 44046 32 21 1 chrX 134917383 134923416 -42050724 + L1PA2 LINE L1 1 6155 0 563 288 9 160 chrX 134924278 134924715 -42049425 + L2 LINE L2 2902 3272 0 324 0 0 0 chrX 134924959 134924995 -42049145 + (T)n Simple_repeat Simple_repeat 1 36 0 334 275 17 75 chrX 134926795 134926915 -42047225 - MIR SINE MIR -74 188 76 272 274 95 36 chrX 134927104 134927188 -42046952 - MER91A DNA MER1_type 0 196 108 513 306 43 54 chrX 134927192 134927378 -42046762 - MER91A DNA MER1_type -12 184 1 476 262 17 23 chrX 134927427 134927574 -42046566 + MER5A DNA MER1_type 4 149 -40 2261 100 10 10 chrX 134927783 134928094 -42046046 - AluSx SINE Alu -1 311 1 695 317 256 10 chrX 134929377 134930274 -42043866 - L2 LINE L2 -703 2611 1494 5936 104 15 13 chrX 134930320 134930834 -42043306 + L1PB3 LINE L1 5278 5796 -358 288 0 0 0 chrX 134930834 134930866 -42043274 + (CA)n Simple_repeat Simple_repeat 2 33 0 5936 104 15 13 chrX 134930866 134931226 -42042914 + L1PB3 LINE L1 5796 6154 0 203 256 8 144 chrX 134932008 134932133 -42042007 - MIR SINE MIR 0 262 155 579 249 109 0 chrX 134932141 134932306 -42041834 + L2 LINE L2 1726 1908 -1406 252 289 67 47 chrX 134932376 134932482 -42041658 + MIR SINE MIR 1 107 -102 330 145 29 29 chrX 134932487 134932556 -42041584 - L2 LINE L2 -1 3271 3203 1846 195 46 39 chrX 134932559 134932924 -42041216 + L2 LINE L2 1944 2314 -1000 2018 153 0 3 chrX 134932924 134933231 -42040909 - AluSx SINE Alu -6 306 1 1846 195 46 39 chrX 134933231 134933296 -42040844 + L2 LINE L2 2314 2377 -937 315 183 14 0 chrX 134933313 134933384 -42040756 + L1MA7 LINE L1 6216 6287 -4 384 287 39 0 chrX 134933456 134933585 -42040555 + L2 LINE L2 2447 2580 -734 939 249 41 62 chrX 134933622 134933963 -42040177 + L2 LINE L2 2976 3309 -4 202 315 46 37 chrX 134933964 134934072 -42040068 - MIR SINE MIR -148 114 6 2102 142 17 9 chrX 134934282 134934627 -42039513 + L1MA10 LINE L1 5979 6326 -8 2197 123 0 16 chrX 134934946 134935263 -42038877 - AluSx SINE Alu 0 312 1 420 243 171 9 chrX 134935517 134935628 -42038512 + MIR SINE MIR 20 148 -60 4133 128 45 37 chrX 134935634 134936345 -42037795 + L1MA9 LINE L1 5594 6310 -2 263 376 35 0 chrX 134936795 134936992 -42037148 - L1ME2 LINE L1 -262 5902 5699 526 294 108 5 chrX 134937346 134937550 -42036590 + L2 LINE L2 1234 1458 -1856 767 276 73 26 chrX 134937961 134938305 -42035835 + L2 LINE L2 2009 2368 -946 522 293 95 15 chrX 134938389 134938898 -42035242 - L1MC4a LINE L1 -5 6116 5573 1862 207 83 91 chrX 134938931 134939087 -42035053 - L1ME3 LINE L1 -1 6161 6005 2293 104 0 3 chrX 134939087 134939395 -42034745 - AluSg SINE Alu -3 307 1 1862 207 83 91 chrX 134939395 134939877 -42034263 - L1ME3 LINE L1 -157 6005 5528 187 282 56 42 chrX 134940154 134940225 -42033915 + L2 LINE L2 3176 3247 -25 6131 82 60 0 chrX 134941820 134942599 -42031541 - LTR12 LTR ERV1 0 826 1 4444 82 26 2 chrX 134943113 134943699 -42030441 - L1PA13 LINE L1 0 6163 5564 366 301 0 0 chrX 134943843 134943926 -42030214 - L2 LINE L2 -44 3269 3187 187 321 0 0 chrX 134944021 134944074 -42030066 - L2 LINE L2 0 3313 3261 285 89 0 0 chrX 134945341 134945386 -42028754 + (CA)n Simple_repeat Simple_repeat 1 45 0 307 242 0 0 chrX 134945787 134945853 -42028287 - MIR SINE MIR -169 93 28 207 69 0 0 chrX 134945949 134945978 -42028162 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 757 103 0 26 chrX 134947051 134947167 -42026973 - L1PB1 LINE L1 0 6151 6039 585 318 28 6 chrX 134948264 134948440 -42025700 - MIR3 SINE MIR -25 183 4 242 205 0 0 chrX 134948889 134948928 -42025212 + MIR SINE MIR 33 71 -137 433 309 0 49 chrX 134948937 134949099 -42025041 + MIR3 SINE MIR 44 197 -11 279 188 25 12 chrX 134949586 134949672 -42024468 + L1ME1 LINE L1 6091 6332 -2 2528 58 3 3 chrX 134949683 134949995 -42024145 + AluSp SINE Alu 1 312 -1 413 18 0 0 chrX 134950188 134950243 -42023897 - L1P LINE L1 -840 5315 5261 3628 20 0 0 chrX 134950243 134950635 -42023505 + L1PA2 LINE L1 5761 6154 -1 203 210 0 48 chrX 134951031 134951093 -42023047 + L2 LINE L2 3210 3268 -4 2296 207 118 4 chrX 134951700 134952184 -42021956 + MLT1F LTR MaLR 4 542 0 1957 151 25 0 chrX 134952374 134952659 -42021481 + AluSx SINE Alu 1 292 -20 449 301 133 77 chrX 134953203 134953618 -42020522 + L3 LINE CR1 911 1348 -229 484 254 17 58 chrX 134953664 134953837 -42020303 - MIR SINE MIR -94 168 3 310 307 26 9 chrX 134953846 134953960 -42020180 + L3 LINE CR1 1369 1484 -93 369 0 0 0 chrX 134954634 134954675 -42019465 + (TG)n Simple_repeat Simple_repeat 2 42 0 4499 124 6 3 chrX 134954872 134955515 -42018625 + L1PA16 LINE L1 5522 6166 0 415 217 0 22 chrX 134956391 134956483 -42017657 + MER103 DNA DNA 77 166 0 2156 114 7 7 chrX 134956794 134957092 -42017048 - AluSx SINE Alu -14 298 1 368 279 88 20 chrX 134958088 134958235 -42015905 - MIR3 SINE MIR -32 176 20 381 281 75 14 chrX 134958993 134959139 -42015001 + L1MC4a LINE L1 5817 5971 -1837 491 225 58 7 chrX 134960092 134960230 -42013910 - MIR SINE MIR -37 225 81 336 65 0 0 chrX 134961499 134961545 -42012595 - MADE1 DNA Mariner 0 80 35 2325 218 53 14 chrX 134961668 134962173 -42011967 + REP3 LTR ERV 1 525 -37 1119 242 33 8 chrX 134963057 134963301 -42010839 + MIR SINE MIR 10 259 -3 336 295 126 0 chrX 134963318 134963413 -42010727 + L2 LINE L2 3153 3259 -13 21 36 0 0 chrX 134964392 134964420 -42009720 + AT_rich Low_complexity Low_complexity 1 28 0 3753 213 27 42 chrX 134964461 134965523 -42008617 - L1ME3 LINE L1 -30 6132 5072 216 0 0 0 chrX 134966208 134966232 -42007908 + (A)n Simple_repeat Simple_repeat 1 24 0 1364 130 17 78 chrX 134966456 134966635 -42007505 + MER20 DNA MER1_type 3 166 -53 2116 114 7 7 chrX 134966635 134966932 -42007208 + AluSc SINE Alu 1 297 -12 1364 130 17 78 chrX 134966932 134966983 -42007157 + MER20 DNA MER1_type 166 219 0 377 277 36 18 chrX 134966986 134967098 -42007042 - MIR3 SINE MIR -51 157 44 709 164 0 16 chrX 134967112 134967234 -42006906 - AluJb SINE Alu -13 299 180 341 86 17 17 chrX 134967372 134967418 -42006722 + Alu SINE Alu 243 291 -9 306 73 0 0 chrX 134967418 134967459 -42006681 + (TA)n Simple_repeat Simple_repeat 2 42 0 341 86 17 17 chrX 134967459 134967470 -42006670 + Alu SINE Alu 290 300 0 655 284 59 54 chrX 134967680 134968103 -42006037 + L1ME4a LINE L1 5604 6028 -93 361 324 21 28 chrX 134969593 134969738 -42004402 - MIR3 SINE MIR -4 204 61 231 195 0 0 chrX 134970392 134970433 -42003707 + (CA)n Simple_repeat Simple_repeat 2 42 0 253 307 94 42 chrX 134971875 134972067 -42002073 - L3b LINE CR1 -102 1481 1280 243 226 60 48 chrX 134972264 134972348 -42001792 - MIR SINE MIR -120 142 58 335 306 70 61 chrX 134973164 134973393 -42000747 + L2 LINE L2 2916 3146 -126 1888 156 0 3 chrX 134973471 134973759 -42000381 + AluJo SINE Alu 1 287 -25 189 0 0 0 chrX 134973762 134973783 -42000357 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 505 294 16 24 chrX 134973980 134974106 -42000034 + L2 LINE L2 3134 3258 -14 237 108 0 0 chrX 134974107 134974144 -41999996 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 235 246 0 167 chrX 134974144 134974270 -41999870 + MIR3 SINE MIR 83 187 -21 23 0 0 0 chrX 134974544 134974567 -41999573 + AT_rich Low_complexity Low_complexity 1 23 0 528 267 22 7 chrX 134974916 134975051 -41999089 + MIR SINE MIR 18 154 -108 782 291 36 0 chrX 134975225 134975448 -41998692 - MIR SINE MIR -30 232 2 212 250 0 0 chrX 134975712 134975756 -41998384 + L3 LINE CR1 1527 1570 -7 207 254 0 14 chrX 134976228 134976299 -41997841 + (CA)n Simple_repeat Simple_repeat 1 70 0 1773 186 116 3 chrX 134976606 134976961 -41997179 + MSTD LTR MaLR 2 396 0 435 260 10 0 chrX 134977012 134977116 -41997024 + MER94 DNA DNA 29 133 -1 324 305 122 0 chrX 134977116 134977247 -41996893 - MIR SINE MIR -58 204 58 2162 264 77 27 chrX 134977574 134978380 -41995760 + L1ME LINE L1 584 1429 -5205 618 225 0 60 chrX 134978417 134978599 -41995541 - L1MA9 LINE L1 -38 6274 6104 2378 282 36 26 chrX 134978600 134979608 -41994532 + L1ME LINE L1 1348 2511 -4314 1731 155 54 3 chrX 134979612 134979734 -41994406 + AluSx SINE Alu 1 115 -197 183 100 0 0 chrX 134979734 134979764 -41994376 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1731 155 54 3 chrX 134979764 134979937 -41994203 + AluSx SINE Alu 115 311 -1 207 0 0 0 chrX 134979937 134979960 -41994180 + (GGAAA)n Simple_repeat Simple_repeat 1 23 0 494 31 16 0 chrX 134979960 134980024 -41994116 + (GAAA)n Simple_repeat Simple_repeat 2 66 0 454 299 33 16 chrX 134980024 134980208 -41993932 + L1ME LINE L1 2461 2647 -3997 535 185 11 0 chrX 134980308 134980400 -41993740 + L1MC4 LINE L1 7808 7900 -142 342 0 0 0 chrX 134980406 134980444 -41993696 + (TG)n Simple_repeat Simple_repeat 2 39 0 257 175 0 18 chrX 134980444 134980501 -41993639 + L1MC4 LINE L1 7987 8042 0 558 268 0 0 chrX 134981937 134982060 -41992080 + MIR SINE MIR 25 147 -115 224 211 19 19 chrX 134982077 134982129 -41992011 + MER91B DNA MER1_type 29 80 -110 1755 179 0 23 chrX 134983083 134983390 -41990750 - AluJb SINE Alu -12 300 1 1393 286 79 30 chrX 134983418 134984176 -41989964 + L1ME4a LINE L1 5327 6121 0 789 128 20 0 chrX 134984176 134984324 -41989816 + (TAGA)n Simple_repeat Simple_repeat 2 152 0 269 270 0 16 chrX 134984399 134984524 -41989616 + MIR SINE MIR 36 252 -10 271 213 66 0 chrX 134984542 134984603 -41989537 + MIR SINE MIR 107 171 -91 720 237 107 31 chrX 134985135 134985426 -41988714 - L1ME4a LINE L1 -2 6119 5807 4739 160 50 37 chrX 134985468 134986494 -41987646 - L1MB5 LINE L1 -16 6158 5110 2428 91 0 3 chrX 134986494 134986803 -41987337 - AluSg SINE Alu -2 308 1 4739 160 50 37 chrX 134986803 134986969 -41987171 - L1MB5 LINE L1 -1064 5110 4948 2380 103 0 0 chrX 134987254 134987565 -41986575 + AluSq SINE Alu 1 311 -2 3106 157 0 0 chrX 134987937 134988396 -41985744 - MLT1C LTR MaLR -3 464 6 1957 267 25 49 chrX 134989166 134990053 -41984087 - L2 LINE L2 -2 3311 2447 4539 153 33 3 chrX 134990598 134991365 -41982775 + L1MB8 LINE L1 5380 6169 -9 261 0 0 0 chrX 134991366 134991395 -41982745 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 1923 150 4 0 chrX 134991397 134991677 -41982463 - AluSq SINE Alu -32 281 1 1071 183 56 0 chrX 134991738 134991935 -41982205 + MER3 DNA MER1_type 1 208 -1 823 183 0 0 chrX 134992027 134992158 -41981982 + FLAM_C SINE Alu 3 133 -10 342 45 0 0 chrX 134992583 134992627 -41981513 + (TG)n Simple_repeat Simple_repeat 2 45 0 2031 191 3 24 chrX 134992737 134993119 -41981021 + MLT1A2 LTR MaLR 1 374 0 1267 107 0 0 chrX 134993699 134993888 -41980252 + AluSg/x SINE Alu 126 314 0 289 314 89 24 chrX 134994107 134994231 -41979909 - L2 LINE L2 0 3272 3141 502 301 20 14 chrX 134995459 134995605 -41978535 - L2 LINE L2 -10 3262 3116 2211 101 3 19 chrX 134995612 134995920 -41978220 + AluSq SINE Alu 1 303 -10 410 237 8 69 chrX 134996651 134996782 -41977358 + MIR SINE MIR 76 198 -64 284 180 0 0 chrX 134996948 134997007 -41977133 + L1PA8A LINE L1 5767 5818 -303 1982 157 3 0 chrX 134997008 134997307 -41976833 + AluSx SINE Alu 1 300 -12 234 190 13 25 chrX 134997447 134997526 -41976614 + GA-rich Low_complexity Low_complexity 3 80 0 215 224 35 17 chrX 134997613 134997671 -41976469 + GA-rich Low_complexity Low_complexity 3 61 0 300 147 40 13 chrX 134997773 134997848 -41976292 + GA-rich Low_complexity Low_complexity 1 77 0 482 309 24 12 chrX 134998551 134998716 -41975424 - MIR3 SINE MIR -28 180 14 580 271 111 15 chrX 134998863 134999062 -41975078 + MIR SINE MIR 12 229 -33 342 278 174 0 chrX 134999240 134999355 -41974785 + L2 LINE L2 3123 3257 -15 541 212 45 53 chrX 134999370 134999502 -41974638 + L2 LINE L2 3182 3312 -1 495 333 87 24 chrX 134999739 135000027 -41974113 + L3b LINE CR1 1147 1452 -131 249 57 0 0 chrX 135000529 135000564 -41973576 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1572 186 18 4 chrX 135000568 135000848 -41973292 - AluJo SINE Alu -17 285 2 695 237 8 0 chrX 135000851 135000982 -41973158 - AluJo/FLAM SINE Alu -169 133 2 463 269 116 33 chrX 135001027 135001269 -41972871 + MIR SINE MIR 1 262 0 314 300 42 25 chrX 135001307 135001427 -41972713 - L2 LINE L2 0 3313 3192 490 191 0 0 chrX 135001427 135001516 -41972624 + ERVL LTR ERVL 1080 1168 -4596 1060 31 0 0 chrX 135001516 135001643 -41972497 - L1PA5 LINE L1 -1763 4383 4257 8721 49 0 0 chrX 135001646 135003435 -41970705 + L1PA5 LINE L1 4361 6154 0 2189 100 47 9 chrX 135003808 135004128 -41970012 + LTR19B LTR ERV1 249 580 0 8689 45 5 3 chrX 135004327 135006116 -41968024 - L1PA4 LINE L1 0 6155 4365 8419 29 0 1 chrX 135006117 135007097 -41967043 + L1PA4 LINE L1 3388 4366 -1780 923 276 37 83 chrX 135008968 135009137 -41965003 - L2 LINE L2 -102 3211 3036 1881 132 0 29 chrX 135009137 135009418 -41964722 - AluSx SINE Alu -39 273 1 923 276 37 83 chrX 135009418 135009751 -41964389 - L2 LINE L2 -277 3036 2734 5168 188 74 30 chrX 135009756 135010523 -41963617 - L1MC4 LINE L1 -3 8039 7197 1812 153 44 0 chrX 135010523 135010817 -41963323 + AluJb SINE Alu 2 308 -4 5168 188 74 30 chrX 135010817 135011263 -41962877 - L1MC4 LINE L1 -845 7197 6772 447 264 19 0 chrX 135011270 135011376 -41962764 - L2 LINE L2 -571 2743 2636 858 128 0 0 chrX 135011551 135011676 -41962464 - AluSg/x SINE Alu 0 309 185 2087 117 26 10 chrX 135012223 135012530 -41961610 + AluSx SINE Alu 1 312 0 2765 204 25 63 chrX 135012772 135012957 -41961183 - MER90 LTR ERV1 -2 612 422 2850 7 0 3 chrX 135012957 135013267 -41960873 + AluYa5 SINE Alu 1 309 -2 2765 204 25 63 chrX 135013267 135013281 -41960859 - MER90 LTR ERV1 -192 422 409 2313 116 0 0 chrX 135013281 135013591 -41960549 + AluSg SINE Alu 1 310 0 2765 204 25 63 chrX 135013591 135014024 -41960116 - MER90 LTR ERV1 -205 409 3 1892 132 9 61 chrX 135014273 135014600 -41959540 + AluSq SINE Alu 1 310 -3 2296 116 0 0 chrX 135015015 135015316 -41958824 + AluSx SINE Alu 1 301 -11 1298 162 0 15 chrX 135016038 135016242 -41957898 + AluJo SINE Alu 86 286 -26 1838 122 65 0 chrX 135016442 135016740 -41957400 - AluSg1 SINE Alu 0 315 1 1237 276 103 40 chrX 135016743 135017188 -41956952 - MER89-int LTR ERV1 -1720 2927 2455 1486 111 44 26 chrX 135017188 135017249 -41956891 - MER30 DNA MER1_type 0 230 172 2506 88 57 25 chrX 135017249 135017602 -41956538 + THE1B LTR MaLR 1 364 0 1486 111 44 26 chrX 135017602 135017766 -41956374 - MER30 DNA MER1_type -58 172 1 820 256 20 48 chrX 135017766 135018016 -41956124 - MER89-int LTR ERV1 -2185 2462 2220 1645 168 63 36 chrX 135018027 135018360 -41955780 + MLT1B LTR MaLR 1 342 -48 1078 113 7 0 chrX 135018449 135018653 -41955487 - AluSg/x SINE Alu 0 336 132 431 365 25 13 chrX 135018750 135018988 -41955152 - MER89-int LTR ERV1 -2311 4490 4250 1093 96 102 6 chrX 135019056 135019223 -41954917 - AluSc SINE Alu -14 295 113 453 328 81 85 chrX 135019522 135019746 -41954394 - MER89-int LTR ERV1 -2898 3903 3680 2258 105 3 0 chrX 135019746 135020041 -41954099 - AluSx SINE Alu -16 296 1 453 328 81 85 chrX 135020041 135020310 -41953830 - MER89-int LTR ERV1 -3121 3680 3412 1825 169 13 3 chrX 135020353 135020655 -41953485 + AluJo SINE Alu 1 305 -7 2159 119 0 6 chrX 135021742 135022053 -41952087 - AluSx SINE Alu -1 311 3 226 172 31 31 chrX 135022192 135022256 -41951884 + T-rich Low_complexity Low_complexity 4 67 0 207 246 41 74 chrX 135022516 135022638 -41951502 - L2 LINE L2 -423 2891 2774 21 0 0 0 chrX 135023368 135023389 -41950751 + AT_rich Low_complexity Low_complexity 1 21 0 316 297 95 40 chrX 135028416 135028638 -41945502 + MIR SINE MIR 6 239 -23 313 307 78 26 chrX 135030168 135030321 -41943819 + MIR3 SINE MIR 33 193 -15 648 138 0 0 chrX 135030321 135030451 -41943689 + (TC)n Simple_repeat Simple_repeat 2 131 0 22 35 0 0 chrX 135030560 135030589 -41943551 + AT_rich Low_complexity Low_complexity 1 29 0 2017 118 3 46 chrX 135030741 135031047 -41943093 - AluSx SINE Alu -18 294 2 979 184 7 42 chrX 135031127 135031335 -41942805 - L1P4 LINE L1 -579 5582 5366 1811 181 0 7 chrX 135031576 135031880 -41942260 + AluJo SINE Alu 1 302 -10 270 193 0 0 chrX 135031938 135031995 -41942145 + (CA)n Simple_repeat Simple_repeat 2 58 0 182 88 0 29 chrX 135032217 135032251 -41941889 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 234 283 11 76 chrX 135032296 135032388 -41941752 - L2 LINE L2 -1 3271 3186 1963 119 7 31 chrX 135032780 135033073 -41941067 + AluSx SINE Alu 6 291 -21 246 32 0 0 chrX 135033160 135033191 -41940949 + (CATA)n Simple_repeat Simple_repeat 2 32 0 481 274 59 0 chrX 135033812 135033947 -41940193 + MIR SINE MIR 79 221 -41 1967 120 0 42 chrX 135034027 135034336 -41939804 + AluSx SINE Alu 1 296 -16 32 26 0 0 chrX 135034394 135034433 -41939707 + AT_rich Low_complexity Low_complexity 1 39 0 204 247 163 78 chrX 135034866 135035032 -41939108 + MIR3 SINE MIR 29 208 0 373 242 53 0 chrX 135035630 135035725 -41938415 - MIR3 SINE MIR -95 113 14 538 273 8 0 chrX 135035769 135035901 -41938239 + MIR SINE MIR 78 210 -52 2183 127 0 0 chrX 135036486 135036786 -41937354 - AluSx SINE Alu -12 300 1 217 252 8 98 chrX 135036968 135037091 -41937049 - MIR SINE MIR -50 212 101 * 652 294 22 5 chrX 135037082 135037266 -41936874 + MIR SINE MIR 16 202 -60 24 32 0 0 chrX 135037282 135037313 -41936827 + AT_rich Low_complexity Low_complexity 1 31 0 2002 142 10 7 chrX 135037679 135037988 -41936152 + AluSx SINE Alu 1 310 -2 959 152 13 32 chrX 135038135 135038293 -41935847 + FRAM SINE Alu 4 158 -8 321 223 42 87 chrX 135038452 135038665 -41935475 + L1MB7 LINE L1 5679 5880 -304 2287 90 0 0 chrX 135038697 135038985 -41935155 + AluSq SINE Alu 1 288 -25 1940 141 3 16 chrX 135039091 135039403 -41934737 - AluJb SINE Alu -4 308 1 368 144 0 3 chrX 135039451 135039672 -41934468 + AluSx SINE Alu 9 302 0 2088 113 0 3 chrX 135039734 135040058 -41934082 + AluSx SINE Alu 1 323 0 290 206 164 0 chrX 135040063 135040136 -41934004 + MIR SINE MIR 65 149 -59 2254 106 0 3 chrX 135040287 135040588 -41933552 + AluSq SINE Alu 1 300 -13 494 31 0 15 chrX 135040588 135040653 -41933487 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 2023 123 0 0 chrX 135041148 135041467 -41932673 - AluSx SINE Alu 0 319 1 566 115 104 31 chrX 135042230 135042326 -41931814 - AluJ SINE Alu -18 294 192 975 134 0 0 chrX 135042326 135042468 -41931672 - AluJ SINE Alu -170 142 1 255 284 20 49 chrX 135042468 135042570 -41931570 + MIR SINE MIR 164 262 0 451 269 192 47 chrX 135042588 135042781 -41931359 - MIR SINE MIR -14 248 28 189 305 0 51 chrX 135043888 135043947 -41930193 + MIR SINE MIR 12 67 -195 219 286 259 41 chrX 135044311 135044458 -41929682 + MIR3 SINE MIR 20 198 -10 308 264 0 0 chrX 135045662 135045734 -41928406 - L1MC4 LINE L1 -1329 6713 6642 316 149 0 0 chrX 135045882 135045929 -41928211 + MER5A DNA MER1_type 91 137 -52 408 136 204 23 chrX 135046450 135046538 -41927602 - L1PB4 LINE L1 0 6156 6053 1789 152 7 32 chrX 135046775 135047084 -41927056 + AluSx SINE Alu 3 303 -9 771 273 58 8 chrX 135047091 135047333 -41926807 + MIR SINE MIR 9 262 0 195 42 0 0 chrX 135048263 135048287 -41925853 + (GGAGA)n Simple_repeat Simple_repeat 1 24 0 311 179 179 8 chrX 135048634 135048751 -41925389 + L1MC5 LINE L1 7488 7624 -337 2170 118 3 9 chrX 135048773 135049088 -41925052 - AluSq SINE Alu 0 313 1 267 37 37 56 chrX 135049092 135049146 -41924994 + (TTTTTG)n Simple_repeat Simple_repeat 2 54 0 528 243 104 17 chrX 135049148 135049321 -41924819 + Charlie8 DNA MER1_type 84 271 -2146 2106 137 0 0 chrX 135049637 135049936 -41924204 + AluSx SINE Alu 1 299 -13 994 235 58 70 chrX 135049969 135050000 -41924140 - L1MC4 LINE L1 -186 7856 7826 1717 126 3 70 chrX 135050000 135050301 -41923839 - AluSx SINE Alu -15 297 17 994 235 58 70 chrX 135050301 135050686 -41923454 - L1MC4 LINE L1 -216 7826 7445 2199 86 3 20 chrX 135050911 135051212 -41922928 - AluSx SINE Alu -16 296 1 2481 90 0 0 chrX 135051317 135051627 -41922513 - AluSx SINE Alu -2 310 1 28 0 0 0 chrX 135051635 135051663 -41922477 + AT_rich Low_complexity Low_complexity 1 28 0 214 209 0 0 chrX 135052263 135052306 -41921834 + L2 LINE L2 3230 3272 0 306 0 0 0 chrX 135052538 135052572 -41921568 + (CCCCG)n Simple_repeat Simple_repeat 5 38 0 249 226 36 12 chrX 135054410 135054494 -41919646 + (TA)n Simple_repeat Simple_repeat 2 87 0 22 35 0 0 chrX 135054589 135054618 -41919522 + AT_rich Low_complexity Low_complexity 1 29 0 422 220 158 34 chrX 135054763 135054940 -41919200 - L3 LINE CR1 -2 1575 1377 538 255 65 43 chrX 135055148 135055332 -41918808 + MIR SINE MIR 54 241 -21 1534 147 120 0 chrX 135055829 135056087 -41918053 - AluJb SINE Alu -23 289 1 365 266 114 32 chrX 135056997 135057155 -41916985 - MER5B DNA MER1_type -6 172 2 2385 86 0 0 chrX 135058252 135058556 -41915584 - AluY SINE Alu -7 304 1 2252 108 0 0 chrX 135060303 135060599 -41913541 - AluSg SINE Alu -14 296 1 342 163 93 0 chrX 135063018 135063104 -41911036 - Charlie5 DNA MER1_type -104 2508 2415 925 120 0 0 chrX 135063262 135063387 -41910753 + AluSq/x SINE Alu 1 125 -188 2320 107 0 0 chrX 135063795 135064095 -41910045 - AluSx SINE Alu -12 300 1 5283 31 0 0 chrX 135065714 135066297 -41907843 + L1PA4 LINE L1 5573 6155 0 212 258 45 0 chrX 135067284 135067350 -41906790 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 2426 99 0 0 chrX 135068243 135068555 -41905585 - AluSx SINE Alu 0 312 1 261 0 0 0 chrX 135070357 135070386 -41903754 + (T)n Simple_repeat Simple_repeat 1 29 0 2357 91 3 0 chrX 135070448 135070744 -41903396 + AluSx SINE Alu 1 297 -15 524 259 132 36 chrX 135070947 135071167 -41902973 - L1ME LINE L1 -369 5752 5512 224 157 196 0 chrX 135071244 135071295 -41902845 - MIR3 SINE MIR -5 203 143 924 125 0 29 chrX 135073891 135074027 -41900113 + FLAM_C SINE Alu 1 132 -1 279 0 0 0 chrX 135074027 135074058 -41900082 + (TA)n Simple_repeat Simple_repeat 2 32 0 877 179 0 0 chrX 135074166 135074311 -41899829 + AluJb SINE Alu 146 290 -22 279 217 17 0 chrX 135074322 135074382 -41899758 + MIR3 SINE MIR 141 201 -7 2161 120 0 0 chrX 135076856 135077175 -41896965 - AluSq SINE Alu 0 319 1 489 243 133 14 chrX 135079206 135079522 -41894618 - L1ME LINE L1 -747 5399 5188 486 87 0 103 chrX 135079529 135079603 -41894537 - L1MA4A LINE L1 -55 6248 6181 2176 133 3 0 chrX 135079603 135079903 -41894237 - AluSx SINE Alu -11 301 1 486 87 0 103 chrX 135079903 135079925 -41894215 - L1MA4A LINE L1 -122 6181 6158 * 774 243 80 36 chrX 135079920 135079944 -41894196 - L1M1 LINE L1 -743 5403 5382 1914 143 3 53 chrX 135079944 135080266 -41893874 - AluJb SINE Alu -5 307 2 774 243 80 36 chrX 135080266 135080650 -41893490 - L1M1 LINE L1 -764 5382 5065 1954 142 3 36 chrX 135080880 135081189 -41892951 + AluJo SINE Alu 1 299 -13 708 236 46 19 chrX 135081644 135081860 -41892280 + MIR SINE MIR 35 256 -6 269 293 85 0 chrX 135082162 135082268 -41891872 - L2 LINE L2 -41 3231 3117 2504 49 0 3 chrX 135082405 135082693 -41891447 + AluY SINE Alu 9 295 -16 229 208 57 0 chrX 135082742 135082795 -41891345 - LTR24 LTR ERV1 -273 194 139 499 286 56 47 chrX 135083334 135083568 -41890572 - MIR SINE MIR -13 249 14 199 232 221 0 chrX 135083604 135083699 -41890441 - MIR SINE MIR -11 251 136 930 139 0 7 chrX 135083702 135083846 -41890294 - FLAM_C SINE Alu 0 143 1 2420 92 0 0 chrX 135084871 135085164 -41888976 + AluSx SINE Alu 1 293 -19 2203 131 0 3 chrX 135085937 135086250 -41887890 - AluSx SINE Alu 0 312 1 183 42 0 0 chrX 135087396 135087420 -41886720 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 927 160 45 0 chrX 135087422 135087578 -41886562 - AluJo SINE Alu -30 282 120 253 61 0 76 chrX 135087579 135087645 -41886495 + (TTC)n Simple_repeat Simple_repeat 2 62 0 970 120 0 0 chrX 135087646 135087779 -41886361 - AluJo SINE Alu -169 133 1 22 0 0 0 chrX 135087893 135087915 -41886225 + AT_rich Low_complexity Low_complexity 1 22 0 740 214 121 0 chrX 135087955 135088128 -41886012 - L1MB5 LINE L1 0 6174 5981 3651 118 13 13 chrX 135088312 135088839 -41885301 - MER1A DNA MER1_type 0 527 1 301 309 48 0 chrX 135089396 135089522 -41884618 + MIR3 SINE MIR 70 201 -7 2351 107 0 0 chrX 135089866 135090166 -41883974 - AluSx SINE Alu -12 300 1 391 220 114 38 chrX 135090173 135090305 -41883835 - MIR SINE MIR -74 188 47 475 263 132 19 chrX 135090426 135090639 -41883501 - MIR SINE MIR -12 250 14 342 160 173 0 chrX 135090892 135090967 -41883173 + MIR SINE MIR 63 150 -112 22 56 0 0 chrX 135093187 135093223 -41880917 + AT_rich Low_complexity Low_complexity 1 36 0 231 88 0 0 chrX 135094158 135094192 -41879948 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 259 303 0 0 chrX 135095027 135095093 -41879047 + C-rich Low_complexity Low_complexity 1 66 0 781 268 13 13 chrX 135095601 135095825 -41878315 - MIR SINE MIR -3 259 36 366 217 33 11 chrX 135095907 135095999 -41878141 + MIR SINE MIR 118 211 -51 234 154 0 39 chrX 135096667 135096719 -41877421 + L1MC4 LINE L1 6660 6709 -1333 2265 95 14 7 chrX 135101245 135101541 -41872599 - AluSc SINE Alu -8 301 4 2103 136 0 0 chrX 135101645 135101939 -41872201 - AluSx SINE Alu -18 294 1 3768 148 54 30 chrX 135102279 135102843 -41871297 + MER50 LTR ERV1 1 587 -147 2275 111 0 0 chrX 135102843 135103140 -41871000 - AluSx SINE Alu -15 297 1 3768 148 54 30 chrX 135103140 135103280 -41870860 + MER50 LTR ERV1 587 722 -12 263 111 0 0 chrX 135103280 135103316 -41870824 + MER50-int LTR ERV1 7 42 -7163 225 311 0 0 chrX 135103364 135103425 -41870715 + L2 LINE L2 3206 3266 -6 31 26 0 0 chrX 135103746 135103784 -41870356 + AT_rich Low_complexity Low_complexity 1 38 0 425 209 18 9 chrX 135107948 135108058 -41866082 + L2 LINE L2 3202 3312 -1 192 244 0 0 chrX 135108277 135108322 -41865818 + L2 LINE L2 3228 3272 0 215 332 47 47 chrX 135109891 135110123 -41864017 - L2 LINE L2 -214 3058 2827 496 288 69 6 chrX 135113076 135113236 -41860904 - MIR3 SINE MIR -3 205 36 569 151 23 0 chrX 135113482 135113568 -41860572 + MER57A LTR ERV1 291 378 -25 1097 208 21 8 chrX 135114202 135114438 -41859702 + MIR SINE MIR 3 241 -21 236 125 0 21 chrX 135115405 135115453 -41858687 - L1MB8 LINE L1 -130 6048 6002 603 179 0 9 chrX 135116054 135116160 -41857980 + FLAM_C SINE Alu 28 132 -11 2026 159 26 112 chrX 135116161 135116669 -41857471 - L1MB5 LINE L1 -18 6156 5693 414 238 127 94 chrX 135116718 135117079 -41857061 - L1MC4a LINE L1 -1695 6113 5741 387 56 0 0 chrX 135117100 135117154 -41856986 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2156 94 28 7 chrX 135117155 135117442 -41856698 - AluSg SINE Alu -17 293 1 22 70 0 0 chrX 135118883 135118926 -41855214 + AT_rich Low_complexity Low_complexity 1 43 0 213 247 0 71 chrX 135119094 135119179 -41854961 + MIR SINE MIR 125 203 -59 180 211 0 39 chrX 135120118 135120170 -41853970 - MIR SINE MIR -124 138 89 21 0 0 0 chrX 135120770 135120791 -41853349 + AT_rich Low_complexity Low_complexity 1 21 0 2430 87 7 0 chrX 135120898 135121207 -41852933 - AluSx SINE Alu -1 311 1 24 0 0 0 chrX 135121609 135121633 -41852507 + AT_rich Low_complexity Low_complexity 1 24 0 2233 100 0 3 chrX 135122979 135123269 -41850871 + AluSx SINE Alu 1 289 -23 198 0 0 0 chrX 135123273 135123295 -41850845 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 415 264 52 17 chrX 135124005 135124179 -41849961 + L1MC4 LINE L1 7836 8015 -27 2134 137 0 6 chrX 135124965 135125279 -41848861 + AluSx SINE Alu 1 312 0 207 0 0 0 chrX 135125387 135125410 -41848730 + (TTG)n Simple_repeat Simple_repeat 2 24 0 945 161 13 0 chrX 135125417 135125572 -41848568 - AluSg/x SINE Alu -19 291 135 237 132 0 0 chrX 135125845 135125883 -41848257 + (ATG)n Simple_repeat Simple_repeat 2 39 0 297 0 0 0 chrX 135126975 135127008 -41847132 + (TG)n Simple_repeat Simple_repeat 2 34 0 654 299 105 61 chrX 135128255 135128871 -41845269 - L1ME4a LINE L1 -198 5923 5301 420 221 63 0 chrX 135129521 135129616 -41844524 + MER5A DNA MER1_type 12 112 -77 863 217 133 52 chrX 135129973 135130024 -41844116 - Charlie8 DNA MER1_type -69 272 227 2379 90 3 3 chrX 135130024 135130334 -41843806 + AluY SINE Alu 1 310 -1 863 217 133 52 chrX 135130334 135130531 -41843609 - Charlie8 DNA MER1_type -114 227 4 2480 85 0 0 chrX 135130989 135131294 -41842846 + AluSx SINE Alu 1 305 -7 2017 100 12 70 chrX 135131828 135132158 -41841982 + AluSx SINE Alu 1 311 -1 308 235 24 12 chrX 135135009 135135094 -41839046 + L2 LINE L2 3211 3296 -17 318 266 313 5 chrX 135135780 135135972 -41838168 + MIR SINE MIR 2 252 -10 2179 103 3 10 chrX 135136517 135136817 -41837323 + AluSc SINE Alu 1 298 -11 280 276 313 5 chrX 135136970 135137162 -41836978 + MIR SINE MIR 2 252 -10 1668 129 114 4 chrX 135139547 135139810 -41834330 + AluSg1 SINE Alu 1 292 -17 207 131 213 33 chrX 135140758 135140819 -41833321 - MER5B DNA MER1_type 0 178 107 1090 208 51 99 chrX 135140819 135141194 -41832946 + MLT1A1 LTR MaLR 1 357 -8 241 204 0 20 chrX 135141214 135141263 -41832877 - MER5B DNA MER1_type -130 48 1 753 169 0 34 chrX 135141282 135141430 -41832710 - MER5A DNA MER1_type -2 187 45 1049 139 36 6 chrX 135141430 135141596 -41832544 - AluJo SINE Alu -79 233 63 473 297 84 7 chrX 135141644 135141799 -41832341 - MIR3 SINE MIR -36 172 6 2272 112 0 0 chrX 135141878 135142181 -41831959 - AluSx SINE Alu -9 303 1 1158 187 19 0 chrX 135143367 135143610 -41830530 + AluJo SINE Alu 71 317 0 2000 142 0 0 chrX 135144452 135144762 -41829378 - AluSx SINE Alu 0 310 1 1433 162 20 12 chrX 135144859 135145112 -41829028 - L1MC2 LINE L1 -9 6335 6081 217 219 0 0 chrX 135145928 135145969 -41828171 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 537 257 16 20 chrX 135146372 135146527 -41827613 + L1ME2 LINE L1 5986 6133 -45 536 264 6 36 chrX 135146407 135146574 -41827566 + L1MA10 LINE L1 6170 6331 -3 * 279 0 0 0 chrX 135147004 135147035 -41827105 + (TG)n Simple_repeat Simple_repeat 2 32 0 2251 84 3 0 chrX 135147454 135147738 -41826402 + AluSq SINE Alu 15 299 -14 2287 91 0 0 chrX 135149015 135149311 -41824829 + AluSx SINE Alu 1 296 -16 341 166 40 63 chrX 135149906 135150016 -41824124 + MIR3 SINE MIR 86 200 -8 324 200 108 25 chrX 135150267 135150387 -41823753 + L1ME4a LINE L1 5978 6107 -14 2318 89 3 3 chrX 135151280 135151584 -41822556 - AluSx SINE Alu -8 304 1 466 269 109 35 chrX 135151657 135151883 -41822257 + MIR SINE MIR 14 256 -6 314 306 26 38 chrX 135152042 135152245 -41821895 + MIR SINE MIR 9 262 0 2239 117 0 3 chrX 135152284 135152592 -41821548 - AluSx SINE Alu -5 307 1 607 200 172 17 chrX 135152716 135152896 -41821244 - MER20 DNA MER1_type -9 210 3 271 265 24 12 chrX 135153277 135153360 -41820780 + L2 LINE L2 3188 3271 -1 22 0 0 0 chrX 135154062 135154084 -41820056 + AT_rich Low_complexity Low_complexity 1 22 0 316 330 89 68 chrX 135156200 135156772 -41817368 - L1M2 LINE L1 -5510 1339 756 21 36 0 0 chrX 135156850 135156878 -41817262 + GC_rich Low_complexity Low_complexity 1 28 0 661 291 141 39 chrX 135157235 135157755 -41816385 - L2 LINE L2 -2 3270 2707 2189 193 53 46 chrX 135157756 135158317 -41815823 - L1MD2 LINE L1 0 6359 5795 383 364 0 0 chrX 135158317 135158427 -41815713 - L2 LINE L2 -596 2718 2609 525 313 57 23 chrX 135158440 135158792 -41815348 - L2 LINE L2 -1415 1899 1536 185 262 83 24 chrX 135159374 135159458 -41814682 + L3b LINE CR1 1296 1384 -199 218 262 350 0 chrX 135159615 135159718 -41814422 - MIR SINE MIR -121 141 3 211 322 151 7 chrX 135160149 135160295 -41813845 + L2 LINE L2 2369 2535 -779 269 333 40 79 chrX 135160303 135160480 -41813660 + L2 LINE L2 3027 3196 -76 263 28 28 0 chrX 135160524 135160560 -41813580 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1367 97 5 5 chrX 135160560 135160746 -41813394 - AluSq SINE Alu -33 280 95 1042 213 11 75 chrX 135160762 135161137 -41813003 - L1MC5 LINE L1 -51 7910 7560 1169 210 19 0 chrX 135161137 135161351 -41812789 + MER58B DNA MER1_type 124 341 0 5565 113 28 13 chrX 135161438 135161565 -41812575 - L1MA5 LINE L1 -2 6298 6174 219 36 0 0 chrX 135161565 135161593 -41812547 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2055 87 44 7 chrX 135161593 135161868 -41812272 - AluSx SINE Alu -27 285 1 5565 113 28 13 chrX 135161868 135162246 -41811894 - L1MA5 LINE L1 -126 6174 5771 249 33 0 0 chrX 135162246 135162276 -41811864 + (TG)n Simple_repeat Simple_repeat 2 31 0 5565 113 28 13 chrX 135162276 135162621 -41811519 - L1MA5 LINE L1 -529 5771 5433 1758 189 116 3 chrX 135162959 135163314 -41810826 + MSTD LTR MaLR 2 396 0 435 260 10 0 chrX 135163365 135163469 -41810671 + MER94 DNA DNA 29 133 -1 324 305 122 0 chrX 135163469 135163600 -41810540 - MIR SINE MIR -58 204 58 2140 266 77 27 chrX 135163927 135164733 -41809407 + L1ME2 LINE L1 20 865 -5205 618 225 0 60 chrX 135164770 135164952 -41809188 - L1MA9 LINE L1 -38 6274 6104 3005 251 65 40 chrX 135164953 135165965 -41808175 + L1ME2 LINE L1 925 1910 -4170 1707 139 41 4 chrX 135165965 135166087 -41808053 + AluSx SINE Alu 1 117 -195 183 100 0 0 chrX 135166087 135166117 -41808023 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1707 139 41 4 chrX 135166117 135166261 -41807879 + AluSx SINE Alu 117 277 -35 642 30 10 40 chrX 135166263 135166362 -41807778 + (GAAA)n Simple_repeat Simple_repeat 2 97 0 3005 251 65 40 chrX 135166362 135167115 -41807025 + L1ME2 LINE L1 1910 2692 -3388 7907 59 7 0 chrX 135167115 135168068 -41806072 + HERVL-A1 LTR ERVL 4695 5654 0 3283 64 14 93 chrX 135168068 135168550 -41805590 + MLT2A1 LTR ERVL 1 444 0 1547 204 56 75 chrX 135168550 135168647 -41805493 + L1ME2 LINE L1 2677 2774 -3306 1471 174 98 11 chrX 135168647 135168912 -41805228 + AluJb SINE Alu 1 288 -24 1547 204 56 75 chrX 135168912 135169158 -41804982 + L1ME2 LINE L1 2774 3023 -3057 1805 155 7 21 chrX 135169158 135169629 -41804511 + AluJo SINE Alu 1 467 0 1547 204 56 75 chrX 135169629 135169644 -41804496 + L1ME2 LINE L1 3023 3037 -3043 180 0 0 0 chrX 135169644 135169664 -41804476 + (CAG)n Simple_repeat Simple_repeat 3 22 0 1547 204 56 75 chrX 135169664 135169889 -41804251 + L1ME2 LINE L1 3037 3252 -2828 346 262 36 0 chrX 135169889 135169973 -41804167 + MER58C DNA MER1_type 1 87 -128 830 154 13 19 chrX 135170005 135170161 -41803979 - L1MB8 LINE L1 0 6178 6024 1643 151 20 61 chrX 135170161 135170506 -41803634 + L1MB3 LINE L1 5760 6090 -93 601 216 6 11 chrX 135170548 135170729 -41803411 + GA-rich Low_complexity Low_complexity 1 180 0 498 142 28 47 chrX 135170758 135170864 -41803276 + MER58C DNA MER1_type 112 215 0 5620 233 53 47 chrX 135170864 135172686 -41801454 + L1ME2 LINE L1 3245 5083 -997 1842 146 0 43 chrX 135172686 135173008 -41801132 + AluJo SINE Alu 5 312 0 5620 233 53 47 chrX 135173008 135173163 -41800977 + L1ME2 LINE L1 5083 5235 -845 * 6698 150 13 9 chrX 135173160 135173473 -41800667 + L1PB2 LINE L1 4085 4395 -1756 675 0 0 0 chrX 135173473 135173548 -41800592 + (CAATA)n Simple_repeat Simple_repeat 2 76 0 6698 150 13 9 chrX 135173548 135175290 -41798850 + L1PB2 LINE L1 4395 6151 0 475 189 27 9 chrX 135175279 135175390 -41798750 + L1ME2 LINE L1 5226 5338 -929 * 2245 180 28 90 chrX 135175392 135175446 -41798694 + L1ME2 LINE L1 5496 5552 -546 1963 144 0 0 chrX 135175446 135175756 -41798384 + AluSx SINE Alu 1 310 0 2245 180 28 90 chrX 135175756 135176214 -41797926 + L1ME2 LINE L1 5552 5964 -134 1763 159 14 7 chrX 135176214 135176491 -41797649 - AluJb SINE Alu -33 279 1 2245 180 28 90 chrX 135176491 135176619 -41797521 + L1ME2 LINE L1 5964 6098 0 437 250 129 8 chrX 135176683 135176815 -41797325 + MIR SINE MIR 4 151 -111 507 320 44 11 chrX 135177409 135177590 -41796550 + MIR SINE MIR 19 205 -57 1117 293 42 57 chrX 135177591 135178069 -41796071 - L2 LINE L2 -497 2817 2347 1739 160 42 3 chrX 135178249 135178580 -41795560 + MER2 DNA MER2_type 1 344 0 23 0 0 0 chrX 135178581 135178604 -41795536 + AT_rich Low_complexity Low_complexity 1 23 0 783 255 15 37 chrX 135179371 135179696 -41794444 - L1MC5 LINE L1 -30 7931 7614 226 264 0 0 chrX 135180162 135180215 -41793925 + T-rich Low_complexity Low_complexity 1 53 0 774 201 87 112 chrX 135180919 135181238 -41792902 - MLT1H1 LTR MaLR 0 555 251 1492 174 124 28 chrX 135181238 135181634 -41792506 - MER63B DNA MER1_type -2 434 1 774 201 87 112 chrX 135181634 135181807 -41792333 - MLT1H1 LTR MaLR -304 251 75 1504 145 4 8 chrX 135183078 135183326 -41790814 - MLT1A1 LTR MaLR -116 249 3 5935 126 16 6 chrX 135183329 135184303 -41789837 + L1MC1 LINE L1 5343 6326 -7 267 198 0 12 chrX 135184303 135184389 -41789751 + L1MC4 LINE L1 3213 3297 -2849 1243 166 42 17 chrX 135184414 135185049 -41789091 + L1MC4 LINE L1 5467 6165 -19 514 294 80 36 chrX 135185061 135185337 -41788803 + L1MC4a LINE L1 5426 5713 -2095 670 218 24 48 chrX 135185585 135185833 -41788307 + L1MC4a LINE L1 5701 5942 -1866 31 44 0 0 chrX 135186002 135186047 -41788093 + AT_rich Low_complexity Low_complexity 1 45 0 2257 91 0 3 chrX 135186065 135186352 -41787788 + AluSq SINE Alu 1 286 -27 310 316 130 42 chrX 135187467 135187920 -41786220 - L2 LINE L2 -351 2963 2471 202 347 14 0 chrX 135187935 135188007 -41786133 + L2 LINE L2 2346 2418 -896 228 150 17 33 chrX 135188784 135188844 -41785296 + (TTA)n Simple_repeat Simple_repeat 3 61 0 667 205 0 0 chrX 135189026 135189148 -41784992 - FLAM_C SINE Alu -20 123 2 1756 191 3 0 chrX 135189416 135189715 -41784425 - AluJo SINE Alu -12 300 1 209 135 0 27 chrX 135191337 135191374 -41782766 + (TAA)n Simple_repeat Simple_repeat 3 38 0 463 227 50 8 chrX 135191396 135191515 -41782625 - MIR SINE MIR -55 207 84 577 281 12 41 chrX 135192615 135192786 -41781354 - MIR SINE MIR -65 197 32 755 238 138 0 chrX 135192811 135193000 -41781140 - MIR SINE MIR -10 252 38 1820 163 3 16 chrX 135193154 135193460 -41780680 - AluJo SINE Alu -10 302 1 289 329 8 5 chrX 135194309 135194501 -41779639 + L1MC4a LINE L1 5715 5826 -340 789 165 8 0 chrX 135194769 135194902 -41779238 + MLT1A1 LTR MaLR 5 138 -227 285 51 0 0 chrX 135194914 135194953 -41779187 + (TG)n Simple_repeat Simple_repeat 2 40 0 1472 119 31 35 chrX 135194953 135195205 -41778935 + MER21A LTR ERV1 12 264 -667 2576 191 62 21 chrX 135195209 135195744 -41778396 + MER21A LTR ERV1 375 931 0 921 149 126 42 chrX 135195744 135195958 -41778182 + MLT1A1 LTR MaLR 134 365 0 238 271 0 0 chrX 135196477 135196536 -41777604 - MIR3 SINE MIR -1 207 149 1944 181 39 18 chrX 135196999 135197381 -41776759 + MLT1B LTR MaLR 1 390 0 495 287 42 84 chrX 135197469 135197659 -41776481 + L1ME4a LINE L1 5533 5729 -392 836 158 0 23 chrX 135197659 135197792 -41776348 - FLAM_C SINE Alu -3 130 1 495 287 42 84 chrX 135197792 135198099 -41776041 + L1ME4a LINE L1 5729 6009 -112 180 158 0 0 chrX 135198568 135198606 -41775534 + (TA)n Simple_repeat Simple_repeat 2 39 0 398 239 15 8 chrX 135206101 135206231 -41767909 + L1M4 LINE L1 3401 3531 -2615 823 286 23 23 chrX 135206232 135206449 -41767691 + MIR SINE MIR 40 256 -6 1460 317 66 56 chrX 135206548 135207253 -41766887 + L2 LINE L2 1996 2716 -556 387 0 0 0 chrX 135207253 135207296 -41766844 + (CA)n Simple_repeat Simple_repeat 1 43 0 1460 317 66 56 chrX 135207296 135207846 -41766294 + L2 LINE L2 2716 3259 -13 236 349 37 42 chrX 135207953 135208142 -41765998 - L2 LINE L2 -824 2490 2303 320 205 217 0 chrX 135209317 135209400 -41764740 - MIR3 SINE MIR -6 202 102 2657 244 38 37 chrX 135210349 135211620 -41762520 + L1MD2 LINE L1 7 1175 -5234 539 107 25 8 chrX 135211619 135211725 -41762415 + L1PA10 LINE L1 6058 6163 -3 * 1966 129 35 0 chrX 135211728 135212014 -41762126 + AluSx SINE Alu 1 296 -16 3247 228 63 22 chrX 135212015 135212907 -41761233 + L1MD2 LINE L1 1168 2115 -4291 1616 172 13 53 chrX 135212907 135213209 -41760931 + AluJo SINE Alu 1 290 -22 3247 228 63 22 chrX 135213209 135213411 -41760729 + L1MD2 LINE L1 2115 2307 -4099 8431 238 62 17 chrX 135213416 135216016 -41758124 + L1MD2 LINE L1 2486 4968 -1438 696 56 0 0 chrX 135216016 135216105 -41758035 + (GAAA)n Simple_repeat Simple_repeat 2 90 0 8431 238 62 17 chrX 135216105 135216359 -41757781 + L1MD2 LINE L1 4968 5209 -1197 2002 136 3 20 chrX 135216359 135216692 -41757448 + AluSx SINE Alu 1 312 0 8431 238 62 17 chrX 135216692 135216751 -41757389 + L1MD2 LINE L1 5209 5531 -875 1030 73 0 0 chrX 135216754 135216877 -41757263 + AluY SINE Alu 1 123 -188 1869 13 0 0 chrX 135216882 135217106 -41757034 - L1PA2 LINE L1 -1051 5095 4872 7808 18 0 0 chrX 135217106 135218171 -41755969 + L1PA2 LINE L1 5090 6155 0 1469 67 0 0 chrX 135218178 135218357 -41755783 + AluY SINE Alu 119 297 -14 4769 132 18 84 chrX 135218382 135219474 -41754666 + L1MA2 LINE L1 5285 6300 -4 3251 184 51 28 chrX 135219497 135220245 -41753895 + L1MD2 LINE L1 5855 6619 0 1264 126 51 42 chrX 135220251 135220291 -41753849 + AluJo SINE Alu 83 121 -191 261 75 0 0 chrX 135220291 135220331 -41753809 + (TAAAA)n Simple_repeat Simple_repeat 2 41 0 1264 126 51 42 chrX 135220331 135220504 -41753636 + AluJo SINE Alu 121 298 -14 292 289 25 40 chrX 135221892 135222093 -41752047 + L1MC4a LINE L1 5711 5908 -1900 543 267 76 50 chrX 135222365 135222668 -41751472 + L1MC4 LINE L1 5585 5895 -1913 257 0 30 0 chrX 135222683 135222716 -41751424 + (TTA)n Simple_repeat Simple_repeat 2 35 0 273 75 0 0 chrX 135222730 135222770 -41751370 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 783 124 0 0 chrX 135222770 135222891 -41751249 - L1PA4 LINE L1 -24 6131 6011 26 0 0 0 chrX 135223269 135223295 -41750845 + AT_rich Low_complexity Low_complexity 1 26 0 452 287 16 8 chrX 135223686 135223808 -41750332 + MIR SINE MIR 20 142 -120 2248 114 0 0 chrX 135224165 135224464 -41749676 + AluSx SINE Alu 1 299 -13 3674 175 35 153 chrX 135225295 135225585 -41748555 + L1MC4 LINE L1 6695 7018 -790 803 199 11 40 chrX 135225585 135225761 -41748379 + AluJo SINE Alu 123 293 -19 3674 175 35 153 chrX 135225761 135226554 -41747586 + L1MC4 LINE L1 7018 7706 -102 1738 140 32 36 chrX 135276652 135276960 -41697180 - AluJb SINE Alu -5 307 1 279 242 0 0 chrX 135277007 135277106 -41697034 + (CAGAGA)n Simple_repeat Simple_repeat 2 100 0 333 122 0 0 chrX 135277106 135277155 -41696985 + MLT2B1 LTR ERVL 472 520 0 1318 178 8 8 chrX 135277167 135277403 -41696737 - MER46A DNA MER2_type 0 236 1 296 287 23 70 chrX 135277444 135277573 -41696567 - MIR SINE MIR -66 142 20 387 286 34 20 chrX 135277892 135278039 -41696101 - MIR3 SINE MIR -51 157 9 343 246 198 16 chrX 135278269 135278395 -41695745 - MER5A DNA MER1_type 0 189 41 1952 132 0 55 chrX 135278550 135278861 -41695279 + AluSx SINE Alu 1 294 -18 232 278 22 22 chrX 135278916 135279006 -41695134 + L2 LINE L2 2722 2811 -503 572 212 17 11 chrX 135279312 135279491 -41694649 + CT-rich Low_complexity Low_complexity 1 180 0 286 206 24 24 chrX 135279512 135279638 -41694502 + CT-rich Low_complexity Low_complexity 4 129 0 385 300 15 15 chrX 135279669 135279799 -41694341 + L2 LINE L2 2919 3048 -224 1211 248 110 28 chrX 135279937 135280373 -41693767 - L2 LINE L2 0 3313 2842 1710 162 21 14 chrX 135280414 135280704 -41693436 + AluJb SINE Alu 1 292 -20 418 282 147 0 chrX 135280800 135280970 -41693170 - MIR SINE MIR -65 197 3 387 0 0 0 chrX 135281067 135281110 -41693030 + (CA)n Simple_repeat Simple_repeat 2 44 0 1705 157 18 14 chrX 135281126 135281239 -41692901 + AluJo SINE Alu 5 116 -196 297 0 0 0 chrX 135281239 135281272 -41692868 + (CA)n Simple_repeat Simple_repeat 2 34 0 1705 157 18 14 chrX 135281272 135281444 -41692696 + AluJo SINE Alu 116 291 -21 952 166 6 0 chrX 135281445 135281602 -41692538 + AluSg/x SINE Alu 126 283 -29 559 254 113 5 chrX 135281703 135281916 -41692224 + MIR SINE MIR 19 254 -8 839 112 6 123 chrX 135282061 135282144 -41691996 - L1 LINE L1 -918 5228 5137 195 42 0 0 chrX 135282144 135282168 -41691972 + (TC)n Simple_repeat Simple_repeat 1 24 0 1816 135 15 0 chrX 135282168 135282435 -41691705 - AluSq SINE Alu -32 281 11 1965 146 0 0 chrX 135282444 135282767 -41691373 - AluJb SINE Alu 0 323 1 839 112 6 123 chrX 135282767 135282850 -41691290 - L1 LINE L1 -1016 5130 5071 1938 129 3 29 chrX 135282882 135283192 -41690948 + AluSx SINE Alu 1 302 -10 656 106 0 10 chrX 135283200 135283304 -41690836 + (GGAA)n Simple_repeat Simple_repeat 2 104 0 2248 100 7 0 chrX 135283415 135283705 -41690435 + AluSx SINE Alu 1 292 -20 1083 69 0 0 chrX 135283711 135283842 -41690298 + AluSg1 SINE Alu 1 131 -178 1462 119 22 48 chrX 135283988 135284257 -41689883 + L1MB7 LINE L1 5914 6175 -9 1732 166 7 14 chrX 135286358 135286642 -41687498 - AluJo SINE Alu -30 282 1 2109 125 13 3 chrX 135287254 135287557 -41686583 + AluSx SINE Alu 5 310 -2 2172 93 4 7 chrX 135287936 135288215 -41685925 + AluSc SINE Alu 8 285 -24 916 172 6 35 chrX 135288233 135288402 -41685738 + AluJb SINE Alu 135 298 -14 256 272 66 59 chrX 135288415 135288551 -41685589 - L2 LINE L2 -230 3083 2947 328 315 55 0 chrX 135288569 135288696 -41685444 - L2 LINE L2 -1 3271 3138 308 304 119 13 chrX 135288732 135288959 -41685181 - L3 LINE CR1 -208 1369 1119 357 281 140 26 chrX 135289044 135289272 -41684868 - L2 LINE L2 -95 3218 2965 342 244 107 15 chrX 135289367 135289498 -41684642 + MIR3 SINE MIR 5 147 -61 219 208 75 0 chrX 135289501 135289554 -41684586 - L2 LINE L2 -20 3252 3196 1828 79 4 0 chrX 135289931 135290159 -41683981 - AluSx SINE Alu -81 231 3 1581 174 63 102 chrX 135291023 135291292 -41682848 + MLT1D LTR MaLR 1 244 -261 2326 105 3 0 chrX 135291292 135291598 -41682542 - AluSx SINE Alu -3 309 3 1581 174 63 102 chrX 135291598 135291804 -41682336 + MLT1D LTR MaLR 244 457 -48 3032 98 4 24 chrX 135291804 135292255 -41681885 - MER1A DNA MER1_type 0 529 1 291 137 0 20 chrX 135292255 135292304 -41681836 + MLT1D LTR MaLR 450 497 -8 283 279 128 75 chrX 135292458 135292797 -41681343 - L2 LINE L2 -219 3053 2684 2258 84 0 17 chrX 135292798 135293085 -41681055 + AluSx SINE Alu 1 282 -30 728 244 29 36 chrX 135293137 135293444 -41680696 - L2 LINE L2 -614 2700 2396 965 155 0 0 chrX 135293446 135293588 -41680552 + FRAM SINE Alu 4 145 -31 257 0 0 29 chrX 135293588 135293622 -41680518 + (TAA)n Simple_repeat Simple_repeat 1 33 0 609 269 50 25 chrX 135293861 135294143 -41679997 - L2 LINE L2 -1227 2087 1799 2197 103 17 10 chrX 135294538 135294840 -41679300 + AluSq SINE Alu 1 304 -9 391 264 25 0 chrX 135294843 135294964 -41679176 + L1M4 LINE L1 4487 4610 -1536 296 318 15 45 chrX 135296666 135296798 -41677342 + L2 LINE L2 2896 3023 -249 2236 115 86 9 chrX 135297104 135297442 -41676698 + THE1B LTR MaLR 1 364 0 252 0 0 0 chrX 135297561 135297589 -41676551 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 2138 107 4 4 chrX 135297589 135297870 -41676270 - AluSq SINE Alu -32 281 1 257 287 110 7 chrX 135298276 135298412 -41675728 - L2 LINE L2 -55 3258 3109 2750 3 7 10 chrX 135298412 135298715 -41675425 + AluYa5 SINE Alu 1 302 -9 22 0 0 0 chrX 135298883 135298905 -41675235 + AT_rich Low_complexity Low_complexity 1 22 0 2050 105 0 46 chrX 135299992 135300298 -41673842 + AluSx SINE Alu 1 292 -20 371 246 114 9 chrX 135300376 135300490 -41673650 + MIR SINE MIR 66 191 -71 411 240 31 0 chrX 135300553 135300649 -41673491 - L2 LINE L2 0 3313 3215 609 122 0 11 chrX 135300682 135300772 -41673368 + FLAM_C SINE Alu 30 118 -25 27 0 0 0 chrX 135300786 135300813 -41673327 + AT_rich Low_complexity Low_complexity 1 27 0 2816 215 124 53 chrX 135300813 135301137 -41673003 - L2 LINE L2 -118 3195 2896 180 0 0 0 chrX 135301137 135301157 -41672983 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 2816 215 124 53 chrX 135301157 135301380 -41672760 - L2 LINE L2 -417 2896 2690 1701 70 0 5 chrX 135301380 135301595 -41672545 + AluYa5 SINE Alu 98 311 0 2816 215 124 53 chrX 135301595 135302051 -41672089 - L2 LINE L2 -623 2690 2082 1117 184 36 5 chrX 135302051 135302274 -41671866 + L1MB7 LINE L1 5936 6165 -19 2816 215 124 53 chrX 135302274 135302526 -41671614 - L2 LINE L2 -1231 2082 1849 2211 150 108 70 chrX 135302541 135302579 -41671561 + L1MC5 LINE L1 6960 6995 -966 222 37 0 0 chrX 135302579 135302606 -41671534 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1939 143 11 0 chrX 135302608 135302887 -41671253 - AluSx SINE Alu -30 282 1 2211 150 108 70 chrX 135302887 135303339 -41670801 + L1MC5 LINE L1 6995 7482 -479 2361 100 0 0 chrX 135303339 135303638 -41670502 + AluSx SINE Alu 1 299 -13 2211 150 108 70 chrX 135303638 135303743 -41670397 + L1MC5 LINE L1 7482 7582 -379 573 249 27 67 chrX 135303797 135304022 -41670118 + L1MC5 LINE L1 7711 7926 -35 2880 237 121 20 chrX 135305440 135306481 -41667659 - L2 LINE L2 -1481 1833 688 2044 123 31 0 chrX 135306604 135306897 -41667243 + AluSq SINE Alu 4 305 -8 189 216 18 153 chrX 135306899 135307010 -41667130 + L2 LINE L2 3022 3117 -196 219 333 49 53 chrX 135307221 135307467 -41666673 + L2 LINE L2 2151 2395 -919 467 200 173 100 chrX 135307592 135307852 -41666288 + L2 LINE L2 3035 3313 0 1111 172 0 0 chrX 135308042 135308216 -41665924 + FRAM SINE Alu 1 170 -6 266 291 0 0 chrX 135308269 135308348 -41665792 - L3b LINE CR1 -398 1185 1107 1909 68 0 4 chrX 135308610 135308845 -41665295 + AluSq SINE Alu 78 311 -2 979 235 32 4 chrX 135310100 135310351 -41663789 + MIR SINE MIR 5 262 0 2364 91 7 0 chrX 135310584 135310880 -41663260 + AluSx SINE Alu 1 298 -14 2527 162 33 22 chrX 135310958 135311414 -41662726 + LOR1b LTR ERV1 1 461 0 314 354 112 27 chrX 135311515 135311962 -41662178 + L2 LINE L2 2158 2642 -672 2330 111 0 0 chrX 135311980 135312278 -41661862 - AluSx SINE Alu -14 298 1 954 91 0 0 chrX 135312429 135312550 -41661590 - AluSg/x SINE Alu -15 297 177 1823 184 0 0 chrX 135312770 135313069 -41661071 - AluJo SINE Alu -13 299 1 558 284 76 103 chrX 135313077 135313295 -41660845 - L2 LINE L2 0 3272 3069 2015 137 121 18 chrX 135313295 135313683 -41660457 - MSTA LTR MaLR 0 428 1 558 284 76 103 chrX 135313683 135313883 -41660257 - L2 LINE L2 -203 3069 2865 1599 194 41 6 chrX 135314065 135314384 -41659756 - MER58B DNA MER1_type -1 340 11 274 279 0 12 chrX 135314419 135314505 -41659635 - L2 LINE L2 -1500 1814 1730 265 183 0 24 chrX 135314736 135314818 -41659322 + GA-rich Low_complexity Low_complexity 4 83 0 200 100 25 0 chrX 135315550 135315590 -41658550 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2348 73 21 0 chrX 135315593 135315881 -41658259 - AluSp SINE Alu -19 294 1 391 223 129 85 chrX 135315946 135316229 -41657911 - L1ME3A LINE L1 -85 6077 5808 351 0 0 0 chrX 135316229 135316268 -41657872 + (TG)n Simple_repeat Simple_repeat 2 40 0 2245 103 7 0 chrX 135316268 135316559 -41657581 - AluSx SINE Alu -19 293 1 391 223 129 85 chrX 135316559 135316773 -41657367 - L1ME3A LINE L1 -353 5809 5560 276 30 0 0 chrX 135316868 135316901 -41657239 + (TG)n Simple_repeat Simple_repeat 2 34 0 2132 101 3 24 chrX 135317069 135317367 -41656773 - AluY SINE Alu -19 292 1 2288 106 0 7 chrX 135317812 135318114 -41656026 + AluSq SINE Alu 1 300 -13 2417 64 0 0 chrX 135318357 135318665 -41655475 + AluY SINE Alu 1 308 0 592 133 0 19 chrX 135318923 135319028 -41655112 + L1PA8 LINE L1 6067 6169 -3 236 239 119 0 chrX 135319625 135319692 -41654448 - HsTC2 DNA Tc2 -1823 75 1 355 174 23 35 chrX 135320273 135320359 -41653781 + MIR3 SINE MIR 123 207 -1 393 222 257 0 chrX 135320415 135320559 -41653581 - MER5A DNA MER1_type 0 189 9 225 258 31 31 chrX 135320802 135320899 -41653241 - MIR3 SINE MIR -109 99 3 234 298 5 64 chrX 135321735 135321923 -41652217 + G-rich Low_complexity Low_complexity 2 178 0 2119 103 3 20 chrX 135323302 135323632 -41650508 + AluSg SINE Alu 3 310 0 211 343 61 10 chrX 135323983 135324082 -41650058 - MIR SINE MIR -106 156 53 225 222 0 0 chrX 135324770 135324815 -41649325 + L2 LINE L2 3210 3254 -18 342 169 0 17 chrX 135324902 135324961 -41649179 - L1ME3A LINE L1 -52 6118 6061 508 312 104 22 chrX 135325333 135325689 -41648451 + L2 LINE L2 1703 2087 -1227 276 198 0 37 chrX 135325700 135325781 -41648359 + MIR SINE MIR 185 262 0 303 235 12 0 chrX 135325874 135325955 -41648185 + L2 LINE L2 2188 2269 -1045 4034 207 63 65 chrX 135325986 135326824 -41647316 + L1ME LINE L1 4061 4899 -1265 2308 77 20 7 chrX 135326824 135327123 -41647017 - AluY SINE Alu -8 303 1 4034 207 63 65 chrX 135327123 135327168 -41646972 + L1ME LINE L1 4899 4943 -1221 2311 107 0 16 chrX 135327168 135327486 -41646654 - AluSq SINE Alu 0 313 1 4034 207 63 65 chrX 135327486 135327762 -41646378 + L1ME LINE L1 4943 5218 -946 4186 119 2 0 chrX 135327762 135328369 -41645771 + L1PA13 LINE L1 5555 6162 -1 4034 207 63 65 chrX 135328369 135328715 -41645425 + L1ME LINE L1 5218 5565 -599 1614 118 0 0 chrX 135328715 135328926 -41645214 + AluSx SINE Alu 1 211 -101 2033 102 0 4 chrX 135329298 135329573 -41644567 - AluSx SINE Alu -38 274 1 315 167 19 0 chrX 135329573 135329627 -41644513 + LTR40b LTR ERVL 408 462 0 2249 126 31 60 chrX 135329635 135330149 -41643991 - MER51A LTR ERV1 0 634 57 955 48 24 0 chrX 135330149 135330273 -41643867 + L1P LINE L1 4446 4572 -1574 585 99 0 0 chrX 135330276 135330357 -41643783 - MER51A LTR ERV1 -553 81 1 249 276 0 13 chrX 135330535 135330611 -41643529 + MIR SINE MIR 183 257 -5 2075 138 0 0 chrX 135330838 135331120 -41643020 + AluSx SINE Alu 1 282 -30 279 79 0 0 chrX 135331123 135331161 -41642979 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1598 179 3 21 chrX 135331161 135331446 -41642694 - AluJb SINE Alu -32 280 1 238 304 58 47 chrX 135331546 135331737 -41642403 - L2 LINE L2 -591 2723 2531 257 308 0 0 chrX 135333309 135333374 -41640766 - L2 LINE L2 -85 3187 3123 1912 94 98 14 chrX 135333789 135334066 -41640074 + AluSq SINE Alu 4 303 -10 2184 124 0 0 chrX 135334861 135335160 -41638980 + AluSx SINE Alu 1 299 -13 1119 249 14 36 chrX 135335168 135335243 -41638897 - L1ME1 LINE L1 -6 6160 6085 2343 84 0 34 chrX 135335243 135335565 -41638575 + AluSq SINE Alu 1 311 -2 1119 249 14 36 chrX 135335565 135335766 -41638374 - L1ME1 LINE L1 -81 6085 5890 587 179 164 36 chrX 135335794 135335989 -41638151 - L1ME4a LINE L1 -1 6120 5901 730 189 0 0 chrX 135336189 135336311 -41637829 - FLAM_C SINE Alu -20 123 2 185 319 50 25 chrX 135336449 135336568 -41637572 + L2 LINE L2 3164 3285 -28 1931 81 44 44 chrX 135337077 135337377 -41636763 + AluSq SINE Alu 15 314 0 527 274 11 21 chrX 135337518 135337708 -41636432 - MIR SINE MIR -15 247 60 180 308 0 0 chrX 135337691 135337743 -41636397 + MIR SINE MIR 210 261 -1 * 202 258 0 61 chrX 135338902 135338968 -41635172 - L2 LINE L2 0 3272 3211 333 0 0 0 chrX 135339121 135339158 -41634982 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 256 232 18 0 chrX 135339158 135339214 -41634926 - L2 LINE L2 -13 3259 3203 415 229 95 21 chrX 135339257 135339450 -41634690 - MIR SINE MIR 0 262 47 1627 190 46 0 chrX 135339517 135339822 -41634318 + MER58B DNA MER1_type 1 319 -22 259 267 0 0 chrX 135340600 135340660 -41633480 - L2 LINE L2 0 3313 3254 251 300 89 0 chrX 135340672 135340762 -41633378 - L2 LINE L2 -190 3082 2985 245 256 155 8 chrX 135341003 135341132 -41633008 - L2 LINE L2 -8 3305 3158 1088 185 8 67 chrX 135342177 135342415 -41631725 + MER58A DNA MER1_type 1 224 0 2384 106 0 3 chrX 135342663 135342974 -41631166 + AluSx SINE Alu 1 310 -2 408 271 231 16 chrX 135342981 135343236 -41630904 + MARNA DNA Mariner 110 419 -167 447 326 46 57 chrX 135345669 135346058 -41628082 - L2 LINE L2 0 3313 2929 1315 194 8 12 chrX 135346102 135346355 -41627785 + AluJo SINE Alu 25 276 -36 25 0 0 0 chrX 135346367 135346392 -41627748 + AT_rich Low_complexity Low_complexity 1 25 0 1165 173 0 0 chrX 135346519 135346716 -41627424 + AluSg/x SINE Alu 94 290 -22 1527 129 7 82 chrX 135346722 135347016 -41627124 + AluSg1 SINE Alu 1 272 -37 1012 203 92 4 chrX 135347062 135347289 -41626851 + Tigger3b DNA MER2_type 1 247 -984 193 182 26 65 chrX 135349397 135349474 -41624666 + MIR SINE MIR 53 126 -82 276 260 104 10 chrX 135349488 135349584 -41624556 + L2 LINE L2 3188 3292 -21 1626 143 65 32 chrX 135349584 135349863 -41624277 - AluJo SINE Alu -19 293 6 5433 118 55 42 chrX 135349889 135350364 -41623776 + Tigger3b DNA MER2_type 245 712 -2316 1760 137 30 11 chrX 135350364 135350635 -41623505 - AluJb SINE Alu -25 287 12 5433 118 55 42 chrX 135350635 135351105 -41623035 + Tigger3b DNA MER2_type 712 1206 -1822 3900 143 40 46 chrX 135351105 135351688 -41622452 - LTR8A LTR ERV1 0 727 147 2340 75 0 4 chrX 135351688 135351990 -41622150 + AluSc SINE Alu 1 301 0 3900 143 40 46 chrX 135351990 135352137 -41622003 - LTR8A LTR ERV1 -580 147 1 5433 118 55 42 chrX 135352137 135352164 -41621976 + Tigger3b DNA MER2_type 1206 1231 0 317 222 68 43 chrX 135352494 135352538 -41621602 + L3 LINE CR1 638 679 -898 1955 132 30 0 chrX 135352538 135352659 -41621481 + AluSx SINE Alu 1 117 -195 243 0 0 0 chrX 135352659 135352686 -41621454 + (CA)n Simple_repeat Simple_repeat 2 28 0 1955 132 30 0 chrX 135352686 135352860 -41621280 + AluSx SINE Alu 117 305 -7 317 222 68 43 chrX 135352860 135352932 -41621208 + L3 LINE CR1 679 757 -820 2151 118 0 20 chrX 135352981 135353285 -41620855 + AluSx SINE Alu 1 298 -14 2219 115 3 6 chrX 135353572 135353884 -41620256 - AluSx SINE Alu -1 311 1 1806 134 6 75 chrX 135353968 135354303 -41619837 + AluSx SINE Alu 1 312 0 1196 241 9 37 chrX 135354333 135354392 -41619748 + L1MDa LINE L1 75 134 -6406 2175 177 0 5 chrX 135354392 135354759 -41619381 + MLT1A1 LTR MaLR 1 365 0 1196 241 9 37 chrX 135354759 135355022 -41619118 + L1MDa LINE L1 134 388 -6152 1506 240 22 37 chrX 135355023 135355336 -41618804 - L1MDa LINE L1 -1347 5193 4890 2313 93 3 13 chrX 135355336 135355687 -41618453 - AluSq SINE Alu 0 313 1 1506 240 22 37 chrX 135355687 135355882 -41618258 - L1MDa LINE L1 -1650 4890 4693 1993 98 0 12 chrX 135355906 135356161 -41617979 - AluSx SINE Alu -60 252 1 378 74 19 0 chrX 135356162 135356216 -41617924 + MADE1 DNA Mariner 26 80 0 1296 216 47 26 chrX 135356216 135356541 -41617599 - L1MDa LINE L1 -2136 4404 4068 336 24 0 0 chrX 135356541 135356582 -41617558 + (TG)n Simple_repeat Simple_repeat 2 42 0 1296 216 47 26 chrX 135356582 135356640 -41617500 - L1MDa LINE L1 -2472 4068 4013 668 192 28 23 chrX 135356666 135356843 -41617297 - L1MDa LINE L1 -3971 2569 2392 2351 106 3 0 chrX 135356855 135357166 -41616974 + AluSx SINE Alu 1 312 0 1351 189 19 11 chrX 135357202 135357466 -41616674 - MLT1-int LTR MaLR -1104 267 2 1598 192 27 52 chrX 135357467 135357874 -41616266 - MLT2C1 LTR ERVL 0 397 1 1821 159 3 7 chrX 135357896 135358192 -41615948 - AluJb SINE Alu -17 295 1 1882 194 131 50 chrX 135358193 135358419 -41615721 + L1ME3A LINE L1 5559 5765 -405 1726 167 0 42 chrX 135358419 135358731 -41615409 + AluJo SINE Alu 1 299 -13 1882 194 131 50 chrX 135358731 135359060 -41615080 + L1ME3A LINE L1 5765 6159 -11 391 301 59 0 chrX 135359136 135359272 -41614868 + L3 LINE CR1 858 1001 -576 220 191 118 0 chrX 135359280 135359348 -41614792 - L3 LINE CR1 -766 811 736 24 0 0 0 chrX 135359471 135359495 -41614645 + AT_rich Low_complexity Low_complexity 1 24 0 2137 115 0 0 chrX 135359495 135359781 -41614359 - AluSx SINE Alu -26 286 1 1788 151 75 0 chrX 135360125 135360403 -41613737 - AluSx SINE Alu -13 299 1 267 303 76 0 chrX 135360586 135360705 -41613435 + L3 LINE CR1 1251 1378 -199 529 198 33 0 chrX 135360710 135360801 -41613339 + AluJb SINE Alu 157 250 -62 970 208 0 62 chrX 135360801 135360860 -41613280 + AluJb SINE Alu 85 146 -166 1833 169 0 7 chrX 135360860 135361187 -41612953 + AluSx SINE Alu 1 312 0 970 208 0 62 chrX 135361187 135361357 -41612783 + AluJb SINE Alu 146 301 -11 2211 102 3 31 chrX 135361357 135361679 -41612461 + AluSq SINE Alu 1 313 0 281 196 196 9 chrX 135361784 135361891 -41612249 + L2 LINE L2 3186 3312 -1 * 400 246 51 29 chrX 135361890 135362028 -41612112 - MIR SINE MIR -121 141 1 381 197 248 17 chrX 135362383 135362500 -41611640 + MIR SINE MIR 8 151 -111 225 242 129 40 chrX 135366146 135366270 -41607870 + L2 LINE L2 2734 2868 -446 240 91 30 45 chrX 135366808 135366874 -41607266 + HAL1b LINE L1 1283 1347 -1 692 211 0 8 chrX 135367156 135367289 -41606851 + FLAM_A SINE Alu 1 132 -1 784 284 62 35 chrX 135367464 135367869 -41606271 + L1MC4a LINE L1 5579 5994 -1814 2216 117 0 10 chrX 135368037 135368337 -41605803 + AluSx SINE Alu 1 297 -15 2221 167 75 36 chrX 135368351 135368794 -41605346 + MLT1C LTR MaLR 1 460 -7 2213 109 16 0 chrX 135369370 135369674 -41604466 - AluSx SINE Alu -3 309 1 442 304 23 51 chrX 135370545 135370762 -41603378 - MIR SINE MIR -50 212 2 362 75 57 0 chrX 135371182 135371266 -41602874 - AluJo SINE Alu 0 316 230 861 152 6 55 chrX 135371266 135371430 -41602710 - AluJo SINE Alu -152 160 5 5310 228 50 43 chrX 135371772 135372644 -41601496 + L1ME3 LINE L1 3437 4329 -1817 2236 92 0 0 chrX 135372644 135372957 -41601183 + AluY SINE Alu 1 313 0 5310 228 50 43 chrX 135372957 135373782 -41600358 + L1ME3 LINE L1 4329 5147 -999 1264 182 0 9 chrX 135373782 135373996 -41600144 + AluJo SINE Alu 85 296 -16 2658 201 94 59 chrX 135374001 135374453 -41599687 + L1ME3 LINE L1 5141 5576 -586 1585 173 3 28 chrX 135374453 135374737 -41599403 + AluJb SINE Alu 1 277 -35 293 0 27 0 chrX 135374741 135374778 -41599362 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 2658 201 94 59 chrX 135374778 135375306 -41598834 + L1ME3 LINE L1 5578 6160 -2 2253 131 12 9 chrX 135376072 135376408 -41597732 - MER1B DNA MER1_type 0 337 1 2437 81 0 0 chrX 135377351 135377648 -41596492 + AluSg SINE Alu 1 297 -13 461 230 97 48 chrX 135377950 135378115 -41596025 + MIR3 SINE MIR 34 206 -2 1885 157 0 14 chrX 135378141 135378429 -41595711 + AluSx SINE Alu 1 283 -29 238 65 0 0 chrX 135378429 135378460 -41595680 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 514 107 0 0 chrX 135378826 135378901 -41595239 - Alu SINE Alu -2 307 233 1524 103 0 0 chrX 135378901 135379095 -41595045 - AluSq SINE Alu -119 194 1 724 308 106 57 chrX 135381133 135381669 -41592471 + L2 LINE L2 2720 3271 -1 573 242 50 0 chrX 135381997 135382117 -41592023 - L2 LINE L2 -8 3264 3139 565 288 45 6 chrX 135382160 135382337 -41591803 + MIR SINE MIR 48 231 -31 295 290 48 40 chrX 135382497 135382621 -41591519 - L2 LINE L2 -300 2972 2848 1083 290 38 62 chrX 135382656 135382787 -41591353 + L2 LINE L2 2677 2810 -503 1090 189 57 5 chrX 135382787 135382999 -41591141 + MER58A DNA MER1_type 2 224 0 1083 290 38 62 chrX 135382999 135383444 -41590696 + L2 LINE L2 2810 3264 -49 1392 147 0 56 chrX 135383444 135383675 -41590465 - MER20 DNA MER1_type -1 218 1 2351 107 0 0 chrX 135383676 135383974 -41590166 + AluSx SINE Alu 1 298 -14 1083 290 38 62 chrX 135383974 135384044 -41590096 + L2 LINE L2 3263 3313 0 725 233 22 22 chrX 135384062 135384242 -41589898 - MIR SINE MIR -43 219 40 409 220 233 7 chrX 135384724 135384874 -41589266 + MIR SINE MIR 67 250 -12 800 228 138 79 chrX 135385358 135385866 -41588274 + L1ME4a LINE L1 5477 6014 -107 2200 116 10 0 chrX 135386325 135386619 -41587521 + AluSx SINE Alu 1 297 -15 1723 249 17 40 chrX 135386679 135387208 -41586932 - L1ME1 LINE L1 -1 6165 5649 546 16 0 0 chrX 135387288 135387351 -41586789 + (TA)n Simple_repeat Simple_repeat 1 63 0 2116 139 0 3 chrX 135387401 135387711 -41586429 + AluSx SINE Alu 1 309 -3 921 158 169 0 chrX 135388061 135388238 -41585902 + MER3 DNA MER1_type 2 208 -1 1990 141 0 3 chrX 135388685 135388976 -41585164 + AluSx SINE Alu 1 290 -22 1095 204 27 0 chrX 135388983 135389203 -41584937 + L1MC3 LINE L1 6255 6480 -1305 5046 117 105 169 chrX 135389306 135389971 -41584169 + L1MC3 LINE L1 6451 7156 -629 1994 115 0 61 chrX 135389971 135390283 -41583857 + AluSq SINE Alu 1 293 -20 5046 117 105 169 chrX 135390283 135390351 -41583789 + L1MC3 LINE L1 7156 7227 -558 262 257 52 59 chrX 135390351 135390487 -41583653 + MLT1F1 LTR MaLR 13 147 -420 5046 117 105 169 chrX 135390487 135391041 -41583099 + L1MC3 LINE L1 7227 7784 -1 518 245 147 29 chrX 135391092 135391499 -41582641 + MLT1J LTR MaLR 2 511 0 21 0 0 0 chrX 135391833 135391854 -41582286 + AT_rich Low_complexity Low_complexity 1 21 0 500 329 69 67 chrX 135391927 135392419 -41581721 + L2 LINE L2 851 1343 -1971 2111 214 83 20 chrX 135392431 135392935 -41581205 + MLT1F LTR MaLR 1 536 -6 484 304 138 19 chrX 135392935 135393195 -41580945 + L2 LINE L2 1360 1650 -1664 1303 178 0 13 chrX 135393195 135393425 -41580715 - AluJo SINE Alu -1 311 85 237 211 0 0 chrX 135393459 135393516 -41580624 + GA-rich Low_complexity Low_complexity 1 57 0 285 183 33 17 chrX 135393556 135393616 -41580524 + MLT1J LTR MaLR 1 61 -450 522 309 7 13 chrX 135394770 135394919 -41579221 + MIR SINE MIR 6 153 -109 1003 238 17 12 chrX 135394994 135395234 -41578906 - MIR SINE MIR -1 261 21 1432 192 67 30 chrX 135395246 135395574 -41578566 - MER58B DNA MER1_type -1 340 1 2456 87 0 0 chrX 135395849 135396158 -41577982 - AluSx SINE Alu -3 309 1 180 294 147 0 chrX 135398270 135398338 -41575802 - L2 LINE L2 -54 3218 3141 241 181 0 213 chrX 135398498 135398527 -41575613 - MIR3 SINE MIR -7 201 168 2238 86 10 0 chrX 135398527 135398829 -41575311 - AluY SINE Alu -6 305 1 241 181 0 213 chrX 135398829 135398926 -41575214 - MIR3 SINE MIR -40 168 102 272 327 106 0 chrX 135398938 135399042 -41575098 + L2 LINE L2 3132 3246 -26 1439 100 0 11 chrX 135399096 135399286 -41574854 + AluSx SINE Alu 1 188 -124 22 0 0 0 chrX 135399396 135399418 -41574722 + AT_rich Low_complexity Low_complexity 1 22 0 498 135 0 0 chrX 135399418 135399492 -41574648 - L1PB4 LINE L1 -4 6152 6079 194 254 0 36 chrX 135399532 135399587 -41574553 - MIR SINE MIR -133 75 23 567 283 114 18 chrX 135402028 135402105 -41572035 - L1ME4a LINE L1 -199 5922 5854 2239 103 0 17 chrX 135402105 135402407 -41571733 + AluSp SINE Alu 1 297 -16 567 283 114 18 chrX 135402407 135402661 -41571479 - L1ME4a LINE L1 -267 5854 5559 617 246 183 47 chrX 135402672 135403099 -41571041 + L1ME4a LINE L1 5563 6047 -74 708 139 101 177 chrX 135403215 135403452 -41570688 - MER20 DNA MER1_type 0 219 1 2265 102 0 0 chrX 135403479 135403772 -41570368 + AluSq SINE Alu 1 293 -20 276 208 28 28 chrX 135403824 135403896 -41570244 - L1P LINE L1 -734 5417 5346 243 0 0 0 chrX 135404120 135404147 -41569993 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chrX 135404163 135404184 -41569956 + AT_rich Low_complexity Low_complexity 1 21 0 1317 75 0 0 chrX 135404185 135404345 -41569795 + L1PA11 LINE L1 6015 6174 0 492 234 14 48 chrX 135404753 135404898 -41569242 + MER105 DNA DNA 65 204 0 2291 91 7 0 chrX 135404951 135405247 -41568893 - AluSx SINE Alu -14 298 1 2336 114 0 0 chrX 135406257 135406565 -41567575 + AluSx SINE Alu 1 308 -4 1532 251 129 41 chrX 135406784 135407357 -41566783 + L1MC4a LINE L1 5406 6054 -1754 2456 80 0 0 chrX 135407357 135407657 -41566483 + AluSq SINE Alu 1 300 -13 1532 251 129 41 chrX 135407657 135407788 -41566352 + L1MC4a LINE L1 6054 6172 -1636 2128 97 17 3 chrX 135407788 135408077 -41566063 + AluSx SINE Alu 1 293 -19 426 232 321 0 chrX 135408342 135408532 -41565608 + L1ME4a LINE L1 5853 6103 -18 21 0 0 0 chrX 135408916 135408937 -41565203 + AT_rich Low_complexity Low_complexity 1 21 0 2428 85 0 7 chrX 135409516 135409821 -41564319 - AluY SINE Alu -8 303 1 1013 166 0 24 chrX 135409866 135410035 -41564105 - FRAM SINE Alu -10 166 2 1646 164 9 31 chrX 135410593 135410910 -41563230 - AluJo SINE Alu -2 310 1 29 0 0 0 chrX 135412251 135412280 -41561860 + AT_rich Low_complexity Low_complexity 1 29 0 859 135 0 0 chrX 135413157 135413283 -41560857 + AluSg/x SINE Alu 174 299 -13 2331 89 3 25 chrX 135413294 135413610 -41560530 + AluSx SINE Alu 1 309 -3 1985 127 32 0 chrX 135413653 135413936 -41560204 + AluSq SINE Alu 1 292 -21 2513 65 0 0 chrX 135413943 135414279 -41559861 + AluY SINE Alu 1 311 0 1896 153 0 0 chrX 135414697 135414985 -41559155 + AluSx SINE Alu 21 308 -4 2244 112 3 3 chrX 135415385 135415697 -41558443 + AluSx SINE Alu 1 312 0 2124 109 7 10 chrX 135416602 135416905 -41557235 + AluSq SINE Alu 1 302 -11 2133 113 0 23 chrX 135417204 135417505 -41556635 - AluSg SINE Alu -16 294 1 2293 146 12 22 chrX 135417540 135417943 -41556197 - L1MB7 LINE L1 -9 6175 5777 219 267 114 57 chrX 135418074 135418179 -41555961 - L2 LINE L2 -46 3226 3116 1210 311 117 40 chrX 135418463 135419432 -41554708 - L2 LINE L2 -459 2855 1813 2219 92 14 3 chrX 135419453 135419746 -41554394 + AluSq SINE Alu 1 296 -17 744 128 0 0 chrX 135420205 135420314 -41553826 - AluSg/x SINE Alu 0 309 201 2029 79 0 11 chrX 135420723 135420990 -41553150 + AluY SINE Alu 1 264 -47 198 0 0 0 chrX 135421084 135421106 -41553034 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 28 0 0 0 chrX 135421990 135422018 -41552122 + AT_rich Low_complexity Low_complexity 1 28 0 1645 150 9 70 chrX 135422090 135422417 -41551723 + AluJo SINE Alu 1 307 -5 851 95 14 14 chrX 135422457 135422604 -41551536 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 360 292 190 49 chrX 135423076 135423262 -41550878 - MIR SINE MIR -4 258 33 704 188 129 64 chrX 135423262 135423464 -41550676 + MER58C DNA MER1_type 1 215 0 360 292 190 49 chrX 135423464 135423503 -41550637 - MIR SINE MIR -229 33 1 234 0 0 0 chrX 135424286 135424312 -41549828 + (TAA)n Simple_repeat Simple_repeat 2 27 0 181 356 33 11 chrX 135427661 135427751 -41546389 + L2 LINE L2 326 417 -2897 1727 150 38 3 chrX 135428237 135428524 -41545616 + AluJb SINE Alu 1 297 -15 726 227 13 0 chrX 135628620 135628846 -41345294 - L1M4 LINE L1 -717 5955 5727 1923 139 62 0 chrX 135628847 135629135 -41345005 - AluJb SINE Alu -6 306 1 3045 203 54 23 chrX 135629142 135630132 -41344008 - L1M4 LINE L1 -4795 1851 828 216 238 0 0 chrX 135630138 135630201 -41343939 + GA-rich Low_complexity Low_complexity 2 64 0 1880 163 13 3 chrX 135630221 135630528 -41343612 + AluJb SINE Alu 1 310 -2 1869 188 3 0 chrX 135630546 135630905 -41343235 + AluJb SINE Alu 3 312 0 940 293 77 38 chrX 135630931 135631454 -41342686 - L1M4 LINE L1 -5784 758 216 7833 51 5 1 chrX 135631497 135633258 -41340882 - L1PA6 LINE L1 -3 6151 4386 770 188 0 8 chrX 135633259 135633392 -41340748 - HUERS-P3b LTR ERV1 -7036 382 251 336 172 17 0 chrX 135633392 135633450 -41340690 - HUERS-P3b LTR ERV1 -7322 96 38 4971 40 0 0 chrX 135633531 135634164 -41339976 - L1P LINE L1 -1748 4398 3766 298 262 47 13 chrX 135634171 135634320 -41339820 - L1M4 LINE L1 -6334 208 55 577 220 32 5 chrX 135634351 135634537 -41339603 - L1MDa LINE L1 -4030 2510 2320 1060 112 11 22 chrX 135634555 135634734 -41339406 - L1MA6 LINE L1 -5 6295 6119 1741 202 34 44 chrX 135634742 135635434 -41338706 - L1P3 LINE L1 -332 5822 5184 * 3388 198 86 14 chrX 135635416 135635718 -41338422 - L1 LINE L1 -1445 4701 4422 2431 92 0 0 chrX 135635718 135636023 -41338117 - AluSq SINE Alu -8 305 1 3388 198 86 14 chrX 135636023 135636585 -41337555 - L1 LINE L1 -1724 4422 3775 19279 149 33 12 chrX 135636613 135638476 -41335664 - L1MA1 LINE L1 0 7721 5899 2323 105 7 0 chrX 135638476 135638781 -41335359 - AluSx SINE Alu -5 307 1 19279 149 33 12 chrX 135638781 135644453 -41329687 - L1MA1 LINE L1 -1822 5899 17 569 160 17 0 chrX 135644461 135644580 -41329560 - L1 LINE L1 -2361 5204 5084 6997 220 42 42 chrX 135644604 135644927 -41329213 + L1M4 LINE L1 2235 2557 -3589 2009 132 0 3 chrX 135644927 135645216 -41328924 + AluSx SINE Alu 1 288 -24 6997 220 42 42 chrX 135645216 135646161 -41327979 + L1M4 LINE L1 2557 3501 -2645 2402 77 10 0 chrX 135646161 135646461 -41327679 + AluSp SINE Alu 1 303 -10 6997 220 42 42 chrX 135646461 135647404 -41326736 + L1M4 LINE L1 3501 4447 -1699 932 182 0 38 chrX 135647404 135647536 -41326604 + AluJo SINE Alu 1 128 -184 2099 115 28 0 chrX 135647536 135647822 -41326318 + AluSx SINE Alu 3 296 -16 932 182 0 38 chrX 135647822 135647848 -41326292 + AluJo SINE Alu 128 153 -159 6997 220 42 42 chrX 135647848 135648428 -41325712 + L1M4 LINE L1 4447 5026 -1120 2227 109 0 0 chrX 135649861 135650163 -41323977 + AluSx SINE Alu 1 302 -10 302 282 47 0 chrX 135650321 135650406 -41323734 + MER81 DNA DNA 26 114 0 501 216 99 37 chrX 135650528 135650690 -41323450 + L2 LINE L2 3142 3313 0 968 286 68 61 chrX 135650712 135650859 -41323281 - L2 LINE L2 -635 2679 2535 2178 107 13 25 chrX 135650859 135651176 -41322964 + AluSq SINE Alu 1 313 0 968 286 68 61 chrX 135651176 135651570 -41322570 - L2 LINE L2 -779 2535 2134 207 349 75 28 chrX 135651852 135651958 -41322182 - L2 LINE L2 -19 3253 3143 2374 83 0 3 chrX 135651984 135652284 -41321856 + AluSq SINE Alu 1 299 -14 425 310 63 13 chrX 135652295 135652453 -41321687 - MIR3 SINE MIR -13 195 30 306 234 16 0 chrX 135652483 135652547 -41321593 - L2 LINE L2 0 3313 3249 495 305 100 78 chrX 135652918 135653239 -41320901 - L2 LINE L2 -10 3262 2935 2191 106 0 3 chrX 135653252 135653577 -41320563 + AluSg SINE Alu 1 324 0 415 281 141 0 chrX 135653708 135653843 -41320297 - MIR SINE MIR -5 257 104 307 268 51 51 chrX 135654230 135654368 -41319772 - MER5A DNA MER1_type 0 189 52 637 219 16 49 chrX 135654446 135654604 -41319536 - L2 LINE L2 -9 3304 3153 768 302 38 8 chrX 135654604 135654839 -41319301 + MIR SINE MIR 2 243 -19 2355 109 0 0 chrX 135655165 135655469 -41318671 + AluSq SINE Alu 5 308 -5 289 324 18 9 chrX 135655682 135655793 -41318347 - MIR SINE MIR -63 145 34 202 286 0 0 chrX 135656034 135656083 -41318057 + L2 LINE L2 3265 3313 0 234 276 53 26 chrX 135656369 135656445 -41317695 + MER5A DNA MER1_type 112 189 0 1308 136 28 33 chrX 135656654 135656868 -41317272 + AluJb SINE Alu 82 294 -18 202 322 84 79 chrX 135656970 135657184 -41316956 + L2 LINE L2 2996 3210 -62 409 139 0 0 chrX 135657185 135657257 -41316883 - L1MA9 LINE L1 -5 6307 6236 352 298 12 0 chrX 135657265 135657349 -41316791 + L2 LINE L2 3186 3270 -2 276 351 70 70 chrX 135657906 135658091 -41316049 + L2 LINE L2 3075 3259 -13 219 283 169 36 chrX 135658110 135658276 -41315864 + L2 LINE L2 3126 3313 0 881 247 31 5 chrX 135658832 135659055 -41315085 - MIR SINE MIR 0 262 34 536 245 43 25 chrX 135659147 135659310 -41314830 - MIR SINE MIR -8 254 89 1099 74 27 0 chrX 135665260 135665409 -41308731 - BC200 scRNA scRNA -46 154 2 2269 119 3 0 chrX 135665927 135666239 -41307901 - AluSq SINE Alu 0 313 1 2235 64 50 0 chrX 135666647 135666930 -41307210 - AluYa5 SINE Alu -14 297 1 845 289 33 25 chrX 135667089 135667331 -41306809 + MIR SINE MIR 11 254 -8 1875 125 14 34 chrX 135667344 135667639 -41306501 - AluSx SINE Alu -9 303 15 2234 98 14 0 chrX 135667992 135668287 -41305853 - AluSq SINE Alu -14 299 1 1854 103 8 4 chrX 135669057 135669318 -41304822 - AluSq SINE Alu -6 307 46 367 318 60 81 chrX 135669357 135669468 -41304672 - L3b LINE CR1 -6 1577 1465 1504 181 18 18 chrX 135669468 135669749 -41304391 + AluJo SINE Alu 13 293 -19 367 318 60 81 chrX 135669749 135670018 -41304122 - L3b LINE CR1 -118 1465 1205 753 274 57 8 chrX 135670081 135670326 -41303814 - MIR SINE MIR -3 259 3 2538 68 0 0 chrX 135671137 135671446 -41302694 - AluY SINE Alu -2 309 1 207 314 141 41 chrX 135671862 135671983 -41302157 + L2 LINE L2 3129 3261 -11 188 350 50 0 chrX 135672382 135672462 -41301678 - L2 LINE L2 0 3313 3230 200 258 65 0 chrX 135672578 135672640 -41301500 - L2 LINE L2 -1271 2043 1978 2390 63 0 23 chrX 135672910 135673212 -41300928 - AluSc SINE Alu -14 295 1 354 184 43 17 chrX 135673263 135673401 -41300739 - MER58B DNA MER1_type 0 341 167 277 218 50 79 chrX 135675882 135675983 -41298157 - Charlie8 DNA MER1_type -2102 315 218 691 242 158 55 chrX 135677148 135677458 -41296682 - L1ME4a LINE L1 -5 6116 5839 2317 110 3 0 chrX 135677458 135677768 -41296372 - AluSp SINE Alu 0 313 3 691 242 158 55 chrX 135677768 135678003 -41296137 - L1ME4a LINE L1 -282 5839 5515 2200 101 10 10 chrX 135679298 135679595 -41294545 - AluSg SINE Alu -12 298 2 2212 137 0 0 chrX 135680629 135680928 -41293212 - AluSg SINE Alu -11 299 1 2498 62 3 0 chrX 135681030 135681335 -41292805 - AluY SINE Alu -5 306 1 2396 88 16 0 chrX 135681342 135681649 -41292491 - AluSx SINE Alu 0 312 1 21 57 0 0 chrX 135681815 135681850 -41292290 + AT_rich Low_complexity Low_complexity 1 35 0 850 73 16 24 chrX 135682567 135682690 -41291450 - L1MA1 LINE L1 0 6302 6181 2251 102 0 3 chrX 135683869 135684162 -41289978 + AluSx SINE Alu 6 297 -15 356 404 113 18 chrX 135684261 135684588 -41289552 - L2 LINE L2 -32 3240 2883 1866 156 11 0 chrX 135684611 135684887 -41289253 + AluJo SINE Alu 4 282 -30 1662 323 72 21 chrX 135684964 135685809 -41288331 - L2 LINE L2 -622 2692 1805 810 138 35 0 chrX 135685821 135685966 -41288174 + L1MC1 LINE L1 6072 6221 -112 2441 137 29 22 chrX 135686054 135686146 -41287994 - L1MC1 LINE L1 -6 6327 6237 444 51 0 0 chrX 135686146 135686205 -41287935 + (CA)n Simple_repeat Simple_repeat 2 60 0 2441 137 29 22 chrX 135686205 135686566 -41287574 - L1MC1 LINE L1 -96 6237 5871 1877 145 7 26 chrX 135686570 135686880 -41287260 - AluJb SINE Alu -8 304 1 198 0 0 0 chrX 135686886 135686908 -41287232 + (T)n Simple_repeat Simple_repeat 1 22 0 708 299 147 28 chrX 135687100 135687562 -41286578 - L2 LINE L2 -1939 1375 859 636 163 76 35 chrX 135687990 135688162 -41285978 + L1MC4 LINE L1 7858 8036 -6 2154 100 0 0 chrX 135688457 135688786 -41285354 - AluSg SINE Alu 0 329 1 715 268 22 56 chrX 135688903 135689134 -41285006 + MIR SINE MIR 2 224 -38 15769 110 21 8 chrX 135689139 135691526 -41282614 + Tigger1 DNA MER2_type 1 2418 0 2114 101 42 0 chrX 135691704 135691992 -41282148 - AluSx SINE Alu -12 300 1 256 171 26 40 chrX 135692133 135692209 -41281931 - L1MC5 LINE L1 -145 7816 7742 204 200 0 0 chrX 135692264 135692309 -41281831 + (TATG)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chrX 135692333 135692368 -41281772 + AT_rich Low_complexity Low_complexity 1 35 0 456 67 0 0 chrX 135692547 135692607 -41281533 + (TTTC)n Simple_repeat Simple_repeat 2 61 0 356 278 74 0 chrX 135692770 135692878 -41281262 - MIR SINE MIR -79 183 68 539 218 60 139 chrX 135693529 135693795 -41280345 + MIR SINE MIR 18 262 0 439 225 155 11 chrX 135693890 135694077 -41280063 + L1MC4a LINE L1 5711 5924 -1884 474 242 34 4 chrX 135694112 135694266 -41279874 - MIR SINE MIR -3 259 46 2233 81 20 14 chrX 135694418 135694715 -41279425 - AluSx SINE Alu -13 299 1 467 279 166 17 chrX 135694726 135695202 -41278938 - L1MC/D LINE L1 -743 5403 5080 2180 104 7 3 chrX 135695202 135695499 -41278641 - AluSq SINE Alu -15 298 1 467 279 166 17 chrX 135695499 135695913 -41278227 - L1MC/D LINE L1 -1066 5080 4729 4356 120 52 17 chrX 135696141 135696859 -41277281 - L1PA16 LINE L1 -1 6165 5423 381 305 102 6 chrX 135696870 135697037 -41277103 - L1MC/D LINE L1 -2328 5480 5298 1718 116 0 12 chrX 135697108 135697388 -41276752 - AluSx SINE Alu 0 321 45 2196 115 3 0 chrX 135697437 135697733 -41276407 - AluSx SINE Alu -15 297 1 25 114 0 0 chrX 135697924 135698047 -41276093 + AT_rich Low_complexity Low_complexity 1 123 0 2349 79 0 3 chrX 135698223 135698513 -41275627 - AluSg SINE Alu -21 289 1 945 212 9 24 chrX 135699427 135699639 -41274501 + MER3 DNA MER1_type 1 209 0 213 291 159 26 chrX 135701021 135701172 -41272968 - MER5B DNA MER1_type 0 178 8 26 0 0 0 chrX 135702011 135702037 -41272103 + AT_rich Low_complexity Low_complexity 1 26 0 373 265 74 35 chrX 135702158 135702415 -41271725 - L1MC5 LINE L1 -23 7938 7672 2219 114 20 0 chrX 135702428 135702734 -41271406 - AluSx SINE Alu 0 312 1 332 151 151 0 chrX 135703051 135703124 -41271016 - MER103 DNA DNA -81 85 2 553 269 47 118 chrX 135703967 135704058 -41270082 - L2 LINE L2 0 3272 3176 2460 77 3 0 chrX 135704058 135704358 -41269782 + AluSq SINE Alu 1 301 -12 553 269 47 118 chrX 135704358 135704743 -41269397 - L2 LINE L2 -96 3176 2569 305 294 25 84 chrX 135705145 135705320 -41268820 + L1M4 LINE L1 3543 3702 -2444 1750 168 10 29 chrX 135705320 135705629 -41268511 - AluJo SINE Alu -9 303 1 305 294 25 84 chrX 135705629 135705691 -41268449 + L1M4 LINE L1 3702 3766 -2380 760 171 0 34 chrX 135705721 135705867 -41268273 + FLAM_C SINE Alu 1 141 -2 340 253 39 84 chrX 135705871 135706025 -41268115 + L1M4 LINE L1 3828 3974 -2172 458 274 21 70 chrX 135706087 135706273 -41267867 - MER5B DNA MER1_type 0 178 2 302 270 45 11 chrX 135706290 135706379 -41267761 + L1M4 LINE L1 4069 4160 -1986 827 158 15 0 chrX 135706379 135706512 -41267628 + AluJo SINE Alu 1 135 -177 1407 178 36 16 chrX 135706512 135706816 -41267324 + AluJo SINE Alu 1 310 -2 2040 131 0 3 chrX 135707091 135707374 -41266766 - AluJb SINE Alu -30 282 1 248 281 74 0 chrX 135707390 135707511 -41266629 + L1M4 LINE L1 4488 4617 -1529 265 263 76 25 chrX 135707577 135707695 -41266445 - MLT1J LTR MaLR -31 480 357 21 71 0 0 chrX 135708042 135708084 -41266056 + AT_rich Low_complexity Low_complexity 1 42 0 286 85 0 0 chrX 135708246 135708293 -41265847 + MER41A LTR ERV1 401 447 -107 359 284 55 30 chrX 135708320 135708394 -41265746 - L1ME4a LINE L1 -217 5904 5833 1723 156 33 0 chrX 135708394 135708702 -41265438 - AluJb SINE Alu 0 317 1 359 284 55 30 chrX 135708702 135708827 -41265313 - L1ME4a LINE L1 -288 5833 5699 264 313 104 37 chrX 135709148 135709311 -41264829 + L2 LINE L2 3104 3277 -36 625 229 113 40 chrX 135709588 135709985 -41264155 - L1MC5 LINE L1 -271 7690 7265 1849 59 0 4 chrX 135710367 135710605 -41263535 + L1PA5 LINE L1 5918 6154 0 367 236 17 32 chrX 135710735 135710901 -41263239 + L1MC4 LINE L1 7187 7430 -458 341 238 92 69 chrX 135710883 135711144 -41262996 + L1MC5 LINE L1 7249 7515 -446 * 204 135 0 0 chrX 135714584 135714621 -41259519 + (T)n Simple_repeat Simple_repeat 1 37 0 1515 187 31 19 chrX 135716873 135717198 -41256942 + L1MB7 LINE L1 5803 6135 -49 2022 82 3 28 chrX 135717198 135717517 -41256623 - AluSp SINE Alu 0 313 2 1515 187 31 19 chrX 135717517 135717549 -41256591 + L1MB7 LINE L1 6135 6165 -19 252 242 100 42 chrX 135717781 135717901 -41256239 - L1MC/D LINE L1 -1903 5905 5779 375 176 86 0 chrX 135717937 135718031 -41256109 - L1MC/D LINE L1 -463 5658 5566 1769 132 20 54 chrX 135718035 135718331 -41255809 + AluJb SINE Alu 13 298 -14 2333 92 3 0 chrX 135720234 135720538 -41253602 - AluSq SINE Alu -8 305 1 227 355 182 0 chrX 135720782 135720892 -41253248 + MIR SINE MIR 19 148 -114 2405 191 135 43 chrX 135720921 135721714 -41252426 + L1MC4 LINE L1 7182 8037 -5 320 173 40 0 chrX 135721817 135721892 -41252248 + L1MC5 LINE L1 7707 7784 -177 1734 101 85 0 chrX 135721893 135722141 -41251999 + AluSx SINE Alu 1 269 -43 184 254 55 0 chrX 135722172 135722227 -41251913 + MIR SINE MIR 136 193 -69 293 236 88 116 chrX 135722318 135722514 -41251626 + L2 LINE L2 1746 1937 -1377 1886 156 3 48 chrX 135722514 135722679 -41251461 - AluJo SINE Alu -12 300 154 2288 99 0 3 chrX 135722679 135722971 -41251169 - AluSg SINE Alu -19 291 1 1886 156 3 48 chrX 135722971 135723119 -41251021 - AluJo SINE Alu -158 154 1 293 236 88 116 chrX 135723119 135723138 -41251002 + L2 LINE L2 1937 1955 -1359 230 291 47 23 chrX 135723750 135723836 -41250304 - L3 LINE CR1 -69 1508 1421 903 132 0 8 chrX 135723868 135723997 -41250143 + AluJo SINE Alu 16 143 -169 232 125 0 0 chrX 135723997 135724037 -41250103 + Alu SINE Alu 96 135 -167 1406 176 9 91 chrX 135724037 135724356 -41249784 + AluJo SINE Alu 1 293 -19 230 183 0 83 chrX 135724360 135724420 -41249720 - L3 LINE CR1 -227 1350 1296 305 299 14 56 chrX 135724430 135724574 -41249566 + MIR SINE MIR 14 151 -111 22 0 0 0 chrX 135724820 135724842 -41249298 + AT_rich Low_complexity Low_complexity 1 22 0 545 204 125 0 chrX 135724931 135725083 -41249057 - L1ME4a LINE L1 -226 5895 5725 247 167 71 111 chrX 135724990 135725116 -41249024 - L1PA8A LINE L1 -306 5825 5705 * 2143 202 32 28 chrX 135725116 135725645 -41248495 + L1MC4 LINE L1 7487 8017 -25 189 0 0 0 chrX 135725668 135725689 -41248451 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1854 154 0 0 chrX 135725689 135725968 -41248172 - AluJb SINE Alu -32 280 2 513 230 6 73 chrX 135726398 135726502 -41247638 - L1ME4a LINE L1 -404 5717 5628 2278 105 0 0 chrX 135726502 135726806 -41247334 - AluSx SINE Alu -8 304 1 513 230 6 73 chrX 135726806 135726879 -41247261 - L1ME4a LINE L1 -493 5628 5552 419 191 52 103 chrX 135726882 135727154 -41246986 - L1MC5 LINE L1 -101 7860 7603 2375 96 0 0 chrX 135727498 135727799 -41246341 + AluSx SINE Alu 1 301 -11 2178 123 0 0 chrX 135727933 135728226 -41245914 - AluSx SINE Alu -19 293 1 2203 106 0 0 chrX 135728252 135728536 -41245604 + AluSq SINE Alu 1 308 0 217 0 0 0 chrX 135728536 135728560 -41245580 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 286 230 40 0 chrX 135728739 135728813 -41245327 + LTR16A1 LTR ERVL 1 77 -380 1330 154 10 0 chrX 135729236 135729457 -41244683 + AluJb SINE Alu 82 304 0 1091 197 19 38 chrX 135729799 135730012 -41244128 + MER3 DNA MER1_type 1 209 0 1760 144 3 38 chrX 135730514 135730806 -41243334 + AluJo SINE Alu 1 282 -30 273 89 0 0 chrX 135730806 135730851 -41243289 + (TC)n Simple_repeat Simple_repeat 2 46 0 2157 114 3 0 chrX 135730895 135731184 -41242956 - AluSx SINE Alu -22 290 1 2341 174 116 23 chrX 135731312 135731836 -41242304 - MER21B LTR ERV1 -1 862 290 568 157 69 0 chrX 135731863 135731965 -41242175 - MER21B LTR ERV1 -654 209 101 2052 109 14 0 chrX 135731998 135732282 -41241858 + AluSx SINE Alu 1 288 -24 429 218 40 10 chrX 135732304 135732405 -41241735 - MER21B LTR ERV1 -754 109 6 40 0 0 0 chrX 135732704 135732744 -41241396 + AT_rich Low_complexity Low_complexity 1 40 0 822 155 8 0 chrX 135732866 135732995 -41241145 + FLAM_A SINE Alu 4 133 0 1608 150 21 42 chrX 135733024 135733310 -41240830 - AluJo SINE Alu -32 280 1 2015 148 3 0 chrX 135733368 135733665 -41240475 - AluJo SINE Alu -14 298 1 277 42 21 21 chrX 135733715 135733763 -41240377 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 2144 75 18 7 chrX 135733763 135734041 -41240099 - AluSq SINE Alu -32 281 1 331 158 0 0 chrX 135734041 135734098 -41240042 - L1MA4 LINE L1 -63 6237 6181 2521 37 0 10 chrX 135734376 135734670 -41239470 + AluY SINE Alu 1 291 -20 366 115 0 49 chrX 135734701 135734762 -41239378 + L1MC3 LINE L1 6709 6766 -1019 192 40 0 0 chrX 135734936 135734961 -41239179 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1404 200 3 10 chrX 135734963 135735253 -41238887 + L1MC4 LINE L1 6806 7093 -949 1094 61 0 0 chrX 135735259 135735391 -41238749 + AluY SINE Alu 1 132 -179 518 193 33 20 chrX 135735392 135735410 -41238730 + L1MC4a LINE L1 6989 7005 -803 2059 106 0 7 chrX 135735410 135735693 -41238447 + AluSg SINE Alu 21 301 -9 518 193 33 20 chrX 135735693 135735824 -41238316 + L1MC4a LINE L1 7005 7140 -668 647 77 145 8 chrX 135735824 135735941 -41238199 + L1MA7 LINE L1 6159 6291 0 182 36 0 36 chrX 135736049 135736077 -41238063 + (TAAAAA)n Simple_repeat Simple_repeat 3 29 0 2167 110 0 29 chrX 135736316 135736625 -41237515 - AluSx SINE Alu -12 300 1 1377 162 41 26 chrX 135736663 135736929 -41237211 + L1MC4a LINE L1 7126 7395 -413 2242 111 0 3 chrX 135736950 135737257 -41236883 - AluSx SINE Alu -6 306 1 523 316 101 51 chrX 135737332 135738018 -41236122 - L2 LINE L2 -1239 2075 1356 806 124 0 0 chrX 135738059 135738164 -41235976 + AluJo SINE Alu 17 121 -191 1680 55 5 5 chrX 135738164 135738365 -41235775 - AluSp SINE Alu -19 294 94 357 87 0 0 chrX 135738365 135738411 -41235729 - AluSp SINE Alu -254 46 1 1107 142 12 0 chrX 135738429 135738591 -41235549 + AluJo SINE Alu 129 292 -20 688 204 6 6 chrX 135738592 135738759 -41235381 + GA-rich Low_complexity Low_complexity 1 167 0 1224 140 198 29 chrX 135738771 135739014 -41235126 + AluJo SINE Alu 3 286 -16 395 345 140 12 chrX 135739088 135739488 -41234652 - L2 LINE L2 -2009 1305 855 1796 156 24 3 chrX 135739708 135739996 -41234144 - AluJo SINE Alu -18 294 1 2271 122 6 0 chrX 135740538 135740849 -41233291 - AluSq SINE Alu 0 313 1 841 159 16 0 chrX 135740868 135740994 -41233146 - FLAM_C SINE Alu -5 128 1 2318 82 0 7 chrX 135741259 135741565 -41232575 - AluSg SINE Alu -6 304 1 1932 137 60 107 chrX 135741827 135742259 -41231881 - MLT2D LTR ERVL 0 414 3 2338 106 0 0 chrX 135742260 135742563 -41231577 + AluSg SINE Alu 1 303 -7 2551 46 0 16 chrX 135742640 135742947 -41231193 + AluY SINE Alu 1 302 -9 2283 112 0 0 chrX 135743221 135743516 -41230624 + AluSx SINE Alu 1 295 -17 2913 202 34 6 chrX 135743606 135744231 -41229909 - MER97a DNA MER1_type? 0 894 253 789 152 8 0 chrX 135744236 135744361 -41229779 + L1ME LINE L1 5645 5770 -400 2151 121 3 3 chrX 135744376 135744674 -41229466 + AluSx SINE Alu 1 298 -14 537 287 99 16 chrX 135744751 135744968 -41229172 - MIR SINE MIR -32 230 3 253 376 17 0 chrX 135745040 135745157 -41228983 - MIR SINE MIR -1 261 143 1297 148 9 5 chrX 135745165 135745375 -41228765 - AluJb SINE Alu -15 297 87 324 233 0 0 chrX 135745375 135745435 -41228705 - MIR SINE MIR -111 151 92 212 280 0 0 chrX 135745491 135745541 -41228599 - L2 LINE L2 -29 3243 3194 2325 96 0 0 chrX 135745817 135746129 -41228011 - AluSx SINE Alu 0 312 1 223 192 0 64 chrX 135746554 135746632 -41227508 + G-rich Low_complexity Low_complexity 5 77 0 * 237 89 18 54 chrX 135746577 135746633 -41227507 + (CGGGG)n Simple_repeat Simple_repeat 5 58 0 187 288 81 36 chrX 135747347 135747458 -41226682 - MIR SINE MIR -70 192 77 386 306 169 0 chrX 135747723 135747847 -41226293 + L2 LINE L2 3169 3313 0 378 289 83 22 chrX 135747917 135748097 -41226043 + MIR SINE MIR 16 206 -56 496 290 23 17 chrX 135748152 135748328 -41225812 - MIR SINE MIR -56 206 30 1843 108 0 117 chrX 135748457 135748652 -41225488 - AluJb SINE Alu -18 294 78 207 0 0 0 chrX 135748652 135748675 -41225465 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2332 77 0 3 chrX 135748675 135748962 -41225178 - AluSq SINE Alu -27 286 1 1843 108 0 117 chrX 135748962 135749098 -41225042 - AluJb SINE Alu -232 80 1 385 204 88 17 chrX 135749297 135749460 -41224680 - MIR SINE MIR -27 235 8 291 216 130 111 chrX 135749487 135749649 -41224491 - MIR SINE MIR -13 249 85 2012 133 30 0 chrX 135751047 135751347 -41222793 - AluSc SINE Alu 0 309 1 2063 101 65 0 chrX 135751407 135751683 -41222457 - AluSq SINE Alu -19 294 1 26 0 0 0 chrX 135751951 135751977 -41222163 + AT_rich Low_complexity Low_complexity 1 26 0 1458 182 51 75 chrX 135752440 135752618 -41221522 + MLT1A2 LTR MaLR 1 182 -192 2299 106 0 0 chrX 135752618 135752920 -41221220 + AluSg SINE Alu 1 302 -8 1458 182 51 75 chrX 135752920 135753115 -41221025 + MLT1A2 LTR MaLR 182 365 -9 2303 87 0 23 chrX 135753522 135753832 -41220308 - AluSx SINE Alu -9 303 1 2204 110 0 19 chrX 135754284 135754592 -41219548 - AluSx SINE Alu -10 302 1 228 345 182 0 chrX 135754637 135754747 -41219393 + L2 LINE L2 3129 3258 -14 1085 58 0 22 chrX 135754813 135754951 -41219189 + AluY SINE Alu 1 135 -176 2183 102 3 13 chrX 135754952 135755257 -41218883 + AluSx SINE Alu 3 304 -8 989 114 0 0 chrX 135755407 135755538 -41218602 - FLAM_C SINE Alu -2 131 1 272 264 0 28 chrX 135755576 135755648 -41218492 - L1MC5 LINE L1 -80 7881 7812 21 89 0 0 chrX 135757199 135757255 -41216885 + AT_rich Low_complexity Low_complexity 1 56 0 1033 101 0 0 chrX 135757266 135757395 -41216745 + FLAM_C SINE Alu 1 129 -4 26 0 0 0 chrX 135757402 135757428 -41216712 + AT_rich Low_complexity Low_complexity 1 26 0 2106 120 7 0 chrX 135758112 135758411 -41215729 - AluSx SINE Alu -3 309 9 1751 167 0 20 chrX 135758423 135758749 -41215391 - AluJo SINE Alu 0 312 6 289 265 64 88 chrX 135758819 135759038 -41215102 - L1MC5 LINE L1 -50 7911 7688 2326 88 0 25 chrX 135759038 135759355 -41214785 - AluSq SINE Alu -4 309 1 2191 121 0 6 chrX 135759357 135759670 -41214470 - AluSx SINE Alu -1 311 1 289 265 64 88 chrX 135759670 135759730 -41214410 - L1MC5 LINE L1 -274 7687 7636 27 62 0 0 chrX 135760380 135760428 -41213712 + AT_rich Low_complexity Low_complexity 1 48 0 672 265 124 71 chrX 135760595 135760901 -41213239 - L1MC4a LINE L1 -1962 5846 5511 1481 116 204 20 chrX 135760901 135761151 -41212989 - AluJb SINE Alu -4 298 3 672 265 124 71 chrX 135761151 135761255 -41212885 - L1MC4a LINE L1 -2297 5511 5414 1193 195 9 0 chrX 135761373 135761583 -41212557 - AluJo SINE Alu -23 289 78 523 319 67 8 chrX 135761954 135762208 -41211932 - MARNA DNA Mariner -40 546 278 348 154 0 0 chrX 135762281 135762333 -41211807 - MER41E LTR ERV1 -148 364 313 252 0 0 0 chrX 135762944 135762972 -41211168 + (ATTG)n Simple_repeat Simple_repeat 3 30 0 2232 102 0 0 chrX 135763496 135763841 -41210299 - AluSx SINE Alu 0 345 1 329 262 19 0 chrX 135763852 135763955 -41210185 - L1MB7 LINE L1 0 6184 6080 800 182 0 0 chrX 135764019 135764140 -41210000 + FLAM_C SINE Alu 11 131 -12 1792 174 0 7 chrX 135764162 135764456 -41209684 - AluJo SINE Alu -20 292 1 1612 153 29 49 chrX 135764817 135765124 -41209016 + AluJo SINE Alu 1 301 -11 556 214 64 40 chrX 135765312 135765485 -41208655 - MER104 DNA MER2_type -3 177 1 806 154 39 8 chrX 135765545 135765675 -41208465 + AluJo SINE Alu 1 134 -178 2255 102 0 0 chrX 135765755 135766050 -41208090 - AluSq SINE Alu -18 295 1 1637 193 20 10 chrX 135766059 135766386 -41207754 - AluJo SINE Alu 0 330 1 226 0 0 56 chrX 135766395 135766431 -41207709 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 344 221 63 0 chrX 135766639 135766738 -41207402 - MIR SINE MIR -62 146 37 1678 143 44 48 chrX 135766935 135767229 -41206911 - AluJo SINE Alu -19 293 1 228 35 0 0 chrX 135767247 135767276 -41206864 + (CA)n Simple_repeat Simple_repeat 2 30 0 243 61 0 0 chrX 135767278 135767311 -41206829 + (TG)n Simple_repeat Simple_repeat 2 34 0 1117 188 31 62 chrX 135767438 135767762 -41206378 - L1MA9 LINE L1 -12 6300 5987 252 184 0 0 chrX 135767930 135767979 -41206161 + (TCTCTG)n Simple_repeat Simple_repeat 4 52 0 504 0 0 0 chrX 135767986 135768042 -41206098 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 2223 119 3 3 chrX 135768523 135768834 -41205306 - AluJb SINE Alu 0 312 2 755 192 181 0 chrX 135768925 135769102 -41205038 + MER3 DNA MER1_type 1 209 0 879 145 0 0 chrX 135770369 135770486 -41203654 + FLAM_C SINE Alu 2 118 -15 710 280 120 48 chrX 135771203 135771337 -41202803 - L1ME LINE L1 -302 5819 5696 673 135 63 9 chrX 135771337 135771448 -41202692 - FLAM_C SINE Alu -16 117 1 710 280 120 48 chrX 135771448 135771788 -41202352 - L1ME LINE L1 -425 5696 5311 681 293 74 14 chrX 135771899 135772196 -41201944 - L1ME LINE L1 -1091 5055 4741 210 171 0 0 chrX 135772883 135772924 -41201216 + (TA)n Simple_repeat Simple_repeat 2 42 0 716 259 116 9 chrX 135773373 135773597 -41200543 + MIR SINE MIR 2 249 -13 445 236 0 0 chrX 135773665 135773775 -41200365 - L1 LINE L1 -3173 2973 2864 678 262 66 6 chrX 135773912 135774095 -41200045 - MIR SINE MIR -41 221 28 2093 129 7 0 chrX 135774615 135774917 -41199223 - AluSx SINE Alu -8 304 1 350 196 110 37 chrX 135775647 135775810 -41198330 - Charlie7 DNA MER1_type 0 2612 2438 338 249 93 47 chrX 135776297 135776475 -41197665 - MIR3 SINE MIR -11 197 10 246 100 50 0 chrX 135776937 135776997 -41197143 + (TA)n Simple_repeat Simple_repeat 2 64 0 26 0 0 0 chrX 135777032 135777058 -41197082 + AT_rich Low_complexity Low_complexity 1 26 0 208 186 47 0 chrX 135777104 135777147 -41196993 - MIR SINE MIR -144 118 74 272 259 41 68 chrX 135777158 135777176 -41196964 + L2 LINE L2 2997 3014 -299 553 204 265 7 chrX 135777176 135777323 -41196817 + MER5A DNA MER1_type 1 185 -4 272 259 41 68 chrX 135777323 135777451 -41196689 + L2 LINE L2 3014 3139 -174 234 0 0 0 chrX 135777458 135777484 -41196656 + (TC)n Simple_repeat Simple_repeat 2 27 0 1518 157 67 27 chrX 135777484 135777861 -41196279 - L1MB7 LINE L1 -14 6170 5784 408 133 160 0 chrX 135777863 135777938 -41196202 - Tigger5 DNA MER2_type 0 2323 2237 302 179 0 18 chrX 135777948 135778004 -41196136 - Tigger5 DNA MER2_type -2268 55 1 274 182 18 0 chrX 135778008 135778063 -41196077 - L1MB7 LINE L1 -399 5779 5724 228 314 67 9 chrX 135778070 135778175 -41195965 + L2 LINE L2 2949 3059 -213 1181 116 12 12 chrX 135778217 135778381 -41195759 - AluSc SINE Alu -16 293 130 252 211 0 0 chrX 135778403 135778455 -41195685 + L1MC4 LINE L1 6652 6703 -1339 222 118 0 0 chrX 135778457 135778491 -41195649 + (TA)n Simple_repeat Simple_repeat 2 35 0 309 170 0 0 chrX 135778491 135778544 -41195596 - L1MC4 LINE L1 -1337 6705 6653 734 119 71 24 chrX 135778545 135778671 -41195469 - FLAM_C SINE Alu -1 132 1 21 0 0 0 chrX 135778679 135778700 -41195440 + AT_rich Low_complexity Low_complexity 1 21 0 963 206 155 44 chrX 135778905 135779269 -41194871 - MLT1E LTR MaLR -97 515 33 293 136 45 0 chrX 135779322 135779366 -41194774 - MLT1E LTR MaLR -608 46 1 205 160 0 100 chrX 135779366 135779416 -41194724 - MER5A DNA MER1_type -109 80 36 509 253 117 0 chrX 135780582 135780736 -41193404 - MIR SINE MIR -71 191 20 263 81 0 0 chrX 135781122 135781159 -41192981 - MADE1 DNA Mariner -43 37 1 1350 156 72 13 chrX 135781376 135781613 -41192527 - MER106B DNA MER1_type -803 256 6 573 91 0 0 chrX 135781623 135781700 -41192440 + AluJ/FRAM SINE Alu 230 306 -6 3924 152 97 13 chrX 135782104 135782856 -41191284 - L1MB7 LINE L1 -16 6168 5354 751 157 32 76 chrX 135783179 135783364 -41190776 - MER5B DNA MER1_type 0 178 2 941 168 0 12 chrX 135783661 135783822 -41190318 + AluJb SINE Alu 136 294 -18 2245 71 11 11 chrX 135783830 135784139 -41190001 + AluSp SINE Alu 1 309 0 2373 74 7 10 chrX 135784145 135784444 -41189696 + AluY SINE Alu 1 298 -13 2233 118 3 0 chrX 135785677 135785981 -41188159 + AluSx SINE Alu 1 305 -7 2553 58 3 3 chrX 135786003 135786312 -41187828 + AluY SINE Alu 1 309 -2 1876 131 7 30 chrX 135787696 135787993 -41186147 + AluJb SINE Alu 1 290 -22 358 241 0 0 chrX 135788298 135788377 -41185763 - MER116 DNA Mariner -1 79 1 1070 248 31 35 chrX 135788398 135788716 -41185424 - REP3 LTR ERV -210 352 36 612 200 15 0 chrX 135788775 135788905 -41185235 + L2 LINE L2 3180 3311 -2 703 238 87 48 chrX 135788999 135789230 -41184910 - MIR SINE MIR -4 258 19 1109 175 149 30 chrX 135789572 135789841 -41184299 - AluJb SINE Alu 0 302 2 2163 202 93 101 chrX 135790189 135790765 -41183375 - L1MC4a LINE L1 -933 6875 6307 1504 68 117 0 chrX 135790765 135790971 -41183169 + MER30 DNA MER1_type 1 230 0 2163 202 93 101 chrX 135790971 135791224 -41182916 - L1MC4a LINE L1 -1501 6307 6053 402 261 81 124 chrX 135791266 135791379 -41182761 - MIR SINE MIR -14 248 149 2340 98 13 0 chrX 135791379 135791685 -41182455 - AluSx SINE Alu -2 310 1 402 261 81 124 chrX 135791685 135791805 -41182335 - MIR SINE MIR -113 149 25 194 339 54 9 chrX 135792182 135792294 -41181846 - L2 LINE L2 -8 3264 3148 2140 68 15 0 chrX 135792553 135792816 -41181324 + AluSq SINE Alu 35 301 -12 488 258 82 38 chrX 135792915 135793158 -41180982 - MLT1K LTR MaLR 0 615 336 582 265 112 33 chrX 135793220 135793435 -41180705 - MLT1L LTR MaLR -369 246 15 587 161 0 0 chrX 135793546 135793639 -41180501 - HsTC2 DNA Tc2 -3 1895 1803 1700 239 26 19 chrX 135793641 135794068 -41180072 - LTR16A LTR ERVL 0 450 21 1995 129 7 7 chrX 135794314 135794609 -41179531 + AluSx SINE Alu 1 295 -17 1781 169 0 30 chrX 135794752 135795048 -41179092 + AluJb SINE Alu 1 287 -25 2247 109 3 0 chrX 135795059 135795362 -41178778 + AluSx SINE Alu 1 304 -8 2172 126 0 0 chrX 135795832 135796125 -41178015 - AluSg SINE Alu -17 293 1 1379 98 30 0 chrX 135796253 135796456 -41177684 - L1PA10 LINE L1 -3 6165 5957 433 261 161 0 chrX 135796740 135796901 -41177239 + MIR SINE MIR 74 260 -2 2186 104 0 13 chrX 135797035 135797334 -41176806 - AluSc SINE Alu -14 295 1 2092 118 13 13 chrX 135797426 135797731 -41176409 + AluSx SINE Alu 1 305 -7 25 51 0 0 chrX 135797822 135797861 -41176279 + AT_rich Low_complexity Low_complexity 1 39 0 788 300 76 16 chrX 135798367 135798893 -41175247 - L2 LINE L2 0 3313 2751 285 314 34 54 chrX 135799375 135799579 -41174561 + MER68 LTR ERV1 223 422 -140 740 181 0 8 chrX 135799587 135799714 -41174426 - AluSq/x SINE Alu -184 129 4 2184 117 61 24 chrX 135799823 135800199 -41173941 + MLT1B LTR MaLR 1 390 0 1917 141 3 33 chrX 135800223 135800527 -41173613 - AluJb SINE Alu -15 297 3 28 95 0 0 chrX 135800614 135800698 -41173442 + AT_rich Low_complexity Low_complexity 1 84 0 255 303 75 27 chrX 135800747 135800935 -41173205 - L1MC4a LINE L1 -1748 6060 5864 2268 231 39 5 chrX 135800935 135801576 -41172564 + L1M4 LINE L1 2276 2938 -3208 2156 98 24 3 chrX 135801577 135801874 -41172266 + AluSq SINE Alu 1 303 -10 733 159 26 0 chrX 135801882 135802033 -41172107 + GA-rich Low_complexity Low_complexity 2 156 0 2655 199 142 30 chrX 135802037 135802846 -41171294 + L1MC4 LINE L1 7143 8042 0 2650 37 0 0 chrX 135802848 135803145 -41170995 + AluY SINE Alu 1 297 -14 207 0 0 0 chrX 135803250 135803273 -41170867 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2233 108 0 0 chrX 135803283 135803571 -41170569 - AluSx SINE Alu -24 288 1 410 188 12 0 chrX 135803571 135803651 -41170489 + L1MC5 LINE L1 7704 7784 -177 1037 138 0 0 chrX 135803653 135803798 -41170342 + AluJb SINE Alu 2 146 -166 1846 172 0 0 chrX 135803798 135804088 -41170052 + AluJb SINE Alu 9 298 -14 436 268 94 35 chrX 135804395 135804473 -41169667 - L2 LINE L2 0 3313 3241 234 0 0 0 chrX 135804473 135804499 -41169641 + (CAA)n Simple_repeat Simple_repeat 2 27 0 436 268 94 35 chrX 135804499 135804674 -41169466 - L2 LINE L2 -72 3241 3045 605 180 9 1 chrX 135804699 135804827 -41169313 + L1MC5 LINE L1 6717 6865 -920 546 192 79 74 chrX 135804830 135805033 -41169107 + L1MC5 LINE L1 6969 7172 -789 2038 190 49 26 chrX 135805147 135805211 -41168929 - MLT1C LTR MaLR 0 467 406 2353 103 0 0 chrX 135805211 135805523 -41168617 + AluSx SINE Alu 1 312 0 2038 190 49 26 chrX 135805523 135805910 -41168230 - MLT1C LTR MaLR -61 406 6 2672 64 14 11 chrX 135805952 135806312 -41167828 - L1PA10 LINE L1 -11 6157 5797 2461 178 48 41 chrX 135806312 135806951 -41167189 + L1MC5 LINE L1 7281 7924 -37 972 56 7 14 chrX 135806962 135807104 -41167036 + (GAAA)n Simple_repeat Simple_repeat 3 143 0 30 45 0 0 chrX 135807279 135807323 -41166817 + AT_rich Low_complexity Low_complexity 1 44 0 751 154 26 0 chrX 135807331 135807448 -41166692 - FLAM_A SINE Alu -13 120 1 1628 225 111 49 chrX 135807452 135807912 -41166228 + MLT1H1 LTR MaLR 19 449 -106 216 0 0 0 chrX 135807912 135807936 -41166204 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2223 87 0 4 chrX 135807937 135808214 -41165926 - AluSg SINE Alu -34 276 1 1628 225 111 49 chrX 135808214 135808257 -41165883 + MLT1H1 LTR MaLR 448 555 0 1710 156 0 33 chrX 135808457 135808732 -41165408 - AluJb SINE Alu -46 266 1 1023 174 0 0 chrX 135808734 135808906 -41165234 - FRAM SINE Alu -4 172 1 235 174 0 0 chrX 135809099 135809145 -41164995 + L1MEc LINE L1 2339 2384 -4012 2001 130 11 0 chrX 135809577 135809853 -41164287 - AluSx SINE Alu -33 279 1 1715 225 92 29 chrX 135809936 135810246 -41163894 + L1MEc LINE L1 2340 2629 -3586 2104 92 0 7 chrX 135810246 135810541 -41163599 + AluSg SINE Alu 13 305 0 1715 225 92 29 chrX 135810541 135810703 -41163437 + L1MEc LINE L1 2629 2779 -3436 2043 103 36 0 chrX 135810703 135811004 -41163136 - L1PA11 LINE L1 -2 6172 5861 1715 225 92 29 chrX 135811004 135811161 -41162979 + L1MEc LINE L1 2779 3011 -3204 786 216 52 79 chrX 135811154 135811205 -41162935 - HAL1 LINE L1 -173 2334 2283 * 2210 127 0 13 chrX 135811205 135811521 -41162619 - AluSx SINE Alu 0 312 1 786 216 52 79 chrX 135811521 135811760 -41162380 - HAL1 LINE L1 -224 2283 2052 455 218 106 98 chrX 135811762 135811966 -41162174 + MLT1A2 LTR MaLR 190 466 -1 1453 123 160 8 chrX 135811992 135812277 -41161863 + AluSg1 SINE Alu 1 322 0 29 47 0 0 chrX 135812319 135812362 -41161778 + AT_rich Low_complexity Low_complexity 1 43 0 2007 69 23 101 chrX 135812371 135812710 -41161430 + AluSx SINE Alu 1 315 0 21 36 0 0 chrX 135812730 135812758 -41161382 + AT_rich Low_complexity Low_complexity 1 28 0 756 173 8 8 chrX 135813186 135813319 -41160821 - AluJo SINE Alu -178 134 2 2024 211 126 82 chrX 135813576 135813912 -41160228 - HAL1 LINE L1 -780 1727 1407 1531 110 0 5 chrX 135813912 135814121 -41160019 - AluSg/x SINE Alu 0 312 105 2024 211 126 82 chrX 135814121 135814628 -41159512 - HAL1 LINE L1 -1100 1407 835 633 205 64 41 chrX 135814628 135814799 -41159341 + MER96 DNA MER1_type 1 175 0 2024 211 126 82 chrX 135814799 135814897 -41159243 - HAL1 LINE L1 -1672 835 743 2031 128 0 0 chrX 135814905 135815220 -41158920 + AluJo SINE Alu 2 316 0 575 272 6 17 chrX 135815267 135815447 -41158693 - LTR16C LTR ERVL 0 491 314 2191 91 28 11 chrX 135816394 135816680 -41157460 - AluSq SINE Alu -22 291 1 1258 114 13 97 chrX 135817136 135817363 -41156777 - AluJb SINE Alu -23 289 82 2072 133 7 3 chrX 135817597 135817905 -41156235 - AluSx SINE Alu -3 309 1 73 23 0 0 chrX 135817905 135817992 -41156148 + AT_rich Low_complexity Low_complexity 1 87 0 2762 147 24 18 chrX 135818024 135818529 -41155611 - L1MB3 LINE L1 0 6183 5676 458 29 72 0 chrX 135818592 135818661 -41155479 + L1MA10 LINE L1 6260 6333 -1 683 237 214 17 chrX 135818681 135819119 -41155021 - MLT1H1 LTR MaLR 0 595 4 3481 136 23 94 chrX 135819206 135819780 -41154360 + LTR8 LTR ERV1 1 513 -178 1758 117 113 0 chrX 135819780 135820059 -41154081 + AluSx SINE Alu 1 308 0 3481 136 23 94 chrX 135820059 135820227 -41153913 + LTR8 LTR ERV1 513 691 0 564 234 7 36 chrX 135820728 135820865 -41153275 - FLAM_C SINE Alu 0 133 1 1935 151 3 0 chrX 135820875 135821159 -41152981 - AluSx SINE Alu -17 295 11 512 189 66 0 chrX 135821264 135821370 -41152770 + MER94 DNA DNA 1 113 -21 2337 81 30 3 chrX 135821675 135821972 -41152168 + AluSq SINE Alu 1 305 -8 456 259 18 0 chrX 135822608 135822720 -41151420 + L2 LINE L2 3200 3313 0 254 307 94 16 chrX 135822721 135822848 -41151292 - MLT1K LTR MaLR -47 541 405 1949 164 7 0 chrX 135823066 135823376 -41150764 + AluJo SINE Alu 1 312 0 519 261 46 65 chrX 135823376 135823636 -41150504 - MLT1K LTR MaLR -325 263 9 1022 194 0 0 chrX 135824054 135824229 -41149911 - FAM SINE Alu 0 175 1 302 313 27 9 chrX 135824336 135824448 -41149692 + MIR3 SINE MIR 43 156 -52 853 112 0 0 chrX 135824603 135824719 -41149421 + FLAM_C SINE Alu 2 117 -16 2376 74 3 16 chrX 135825422 135825731 -41148409 + AluY SINE Alu 1 305 -6 353 174 77 77 chrX 135826514 135826669 -41147471 - L1ME4a LINE L1 -13 6108 5954 536 270 68 71 chrX 135827088 135827440 -41146700 - L1ME4a LINE L1 -86 6035 5685 432 0 0 0 chrX 135828017 135828065 -41146075 + (CA)n Simple_repeat Simple_repeat 1 48 0 319 299 63 6 chrX 135828175 135828349 -41145791 - L1ME4a LINE L1 -206 5915 5732 204 283 19 0 chrX 135828693 135828746 -41145394 + MIR SINE MIR 86 139 -69 22 0 0 0 chrX 135830485 135830507 -41143633 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chrX 135836191 135836236 -41137904 + GC_rich Low_complexity Low_complexity 1 45 0 423 254 84 74 chrX 135836837 135837127 -41137013 + L1MC4 LINE L1 7626 8037 -5 1042 99 0 0 chrX 135840681 135840812 -41133328 + AluSq SINE Alu 132 262 -51 183 42 0 0 chrX 135840821 135840845 -41133295 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 210 255 0 0 chrX 135841134 135841181 -41132959 + A-rich Low_complexity Low_complexity 5 51 0 201 315 146 0 chrX 135841328 135841458 -41132682 + L2 LINE L2 2702 2850 -464 428 310 95 25 chrX 135841516 135841758 -41132382 + L2 LINE L2 3002 3260 -12 2196 128 20 0 chrX 135841758 135842064 -41132076 - AluSx SINE Alu 0 312 1 2286 80 19 26 chrX 135842584 135842916 -41131224 + AluSx SINE Alu 4 333 0 2247 118 0 0 chrX 135842918 135843215 -41130925 + AluSg SINE Alu 1 297 -13 207 0 0 0 chrX 135843279 135843302 -41130838 + (T)n Simple_repeat Simple_repeat 1 23 0 230 81 27 0 chrX 135843565 135843602 -41130538 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 195 42 0 0 chrX 135843826 135843850 -41130290 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 279 250 0 15 chrX 135845148 135845216 -41128924 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1454 225 158 21 chrX 135845671 135846147 -41127993 + MLT1F LTR MaLR 2 542 0 3442 71 8 21 chrX 135846478 135846957 -41127183 - L1MA2 LINE L1 -10 6294 5822 2225 87 49 0 chrX 135847663 135847949 -41126191 + AluY SINE Alu 1 300 -11 1799 128 26 46 chrX 135848183 135848487 -41125653 - AluJb SINE Alu -14 298 1 233 354 9 9 chrX 135848492 135848605 -41125535 + L2 LINE L2 2935 3047 -266 275 213 75 0 chrX 135848847 135848927 -41125213 + L2 LINE L2 2286 2371 -943 566 283 110 5 chrX 135849525 135849716 -41124424 + MIR SINE MIR 8 218 -44 485 217 0 0 chrX 135850186 135850278 -41123862 + L2 LINE L2 3177 3268 -4 1751 169 14 4 chrX 135850466 135850744 -41123396 - AluJb SINE Alu -31 281 1 301 79 26 79 chrX 135850751 135850827 -41123313 - L1MA8 LINE L1 -1 6290 6219 546 210 8 0 chrX 135850829 135850948 -41123192 + MIR SINE MIR 73 192 -70 303 280 185 21 chrX 135850957 135851146 -41122994 + L2 LINE L2 2955 3174 -139 2260 109 0 0 chrX 135851167 135851460 -41122680 - AluSx SINE Alu -17 295 3 2303 107 0 0 chrX 135851462 135851760 -41122380 - AluSx SINE Alu -14 298 1 186 238 0 0 chrX 135852236 135852278 -41121862 + MIR SINE MIR 195 236 -26 1729 179 0 19 chrX 135853964 135854272 -41119868 + AluJo SINE Alu 11 312 0 339 85 0 0 chrX 135854281 135854328 -41119812 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 242 176 20 0 chrX 135854730 135854781 -41119359 - L2 LINE L2 0 3313 3262 218 175 0 35 chrX 135855413 135855470 -41118670 + CT-rich Low_complexity Low_complexity 2 56 0 597 14 0 0 chrX 135856220 135856290 -41117850 + (TG)n Simple_repeat Simple_repeat 2 71 0 2219 75 0 41 chrX 135856300 135856617 -41117523 - AluSx SINE Alu 0 306 2 507 122 0 137 chrX 135857712 135857851 -41116289 - L1MA7 LINE L1 0 6291 6172 1178 151 10 0 chrX 135857855 135858054 -41116086 + L1MA7 LINE L1 5953 6153 -138 235 217 217 0 chrX 135859117 135859232 -41114908 - L1ME4a LINE L1 -1 6120 5981 291 28 0 0 chrX 135860536 135860572 -41113568 + (TC)n Simple_repeat Simple_repeat 1 36 0 234 0 0 0 chrX 135860571 135860597 -41113543 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 236 281 0 0 chrX 135860739 135860796 -41113344 + L2 LINE L2 3215 3271 -1 439 127 141 0 chrX 135861837 135861908 -41112232 + FRAM/FAM SINE Alu 1 73 -103 2409 87 0 0 chrX 135861967 135862265 -41111875 + AluY SINE Alu 1 298 -13 35 98 0 0 chrX 135862356 135862468 -41111672 + AT_rich Low_complexity Low_complexity 1 112 0 234 157 36 0 chrX 135862637 135862720 -41111420 + (TA)n Simple_repeat Simple_repeat 1 86 0 2422 91 3 0 chrX 135862735 135863031 -41111109 + AluSg SINE Alu 1 297 -13 1653 167 101 67 chrX 135863031 135863467 -41110673 + MLT1C LTR MaLR 15 465 -2 484 328 0 16 chrX 135863695 135863884 -41110256 + L3 LINE CR1 1355 1540 -37 2228 88 10 7 chrX 135863884 135864179 -41109961 + AluSx SINE Alu 1 296 -16 390 91 0 0 chrX 135864213 135864268 -41109872 + (TG)n Simple_repeat Simple_repeat 2 56 0 182 118 29 0 chrX 135864318 135864352 -41109788 + (CATA)n Simple_repeat Simple_repeat 4 38 0 2704 51 0 0 chrX 135864613 135864924 -41109216 + AluY SINE Alu 1 311 0 794 169 14 7 chrX 135864989 135865137 -41109003 - AluJb SINE Alu 0 312 164 218 171 0 0 chrX 135866755 135866790 -41107350 + GA-rich Low_complexity Low_complexity 2 36 0 499 295 39 6 chrX 135866816 135867007 -41107133 - MIR SINE MIR -42 220 26 2506 79 0 0 chrX 135867960 135868263 -41105877 - AluSx SINE Alu -9 303 1 222 37 0 0 chrX 135868970 135868997 -41105143 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 429 251 70 35 chrX 135869425 135869596 -41104544 + MIR SINE MIR 86 262 0 647 167 18 0 chrX 135869731 135869878 -41104262 - FLAM_C SINE Alu 0 150 2 704 208 72 24 chrX 135869953 135870160 -41103980 + MIR SINE MIR 34 250 -12 2210 66 0 56 chrX 135871540 135871842 -41102298 + AluSc SINE Alu 1 285 -24 209 176 0 0 chrX 135873098 135873132 -41101008 + CT-rich Low_complexity Low_complexity 2 35 0 2198 115 26 3 chrX 135873149 135873329 -41100811 - AluSx SINE Alu -1 311 120 423 0 0 0 chrX 135873329 135873376 -41100764 + (TG)n Simple_repeat Simple_repeat 2 48 0 2198 115 26 3 chrX 135873376 135873499 -41100641 - AluSx SINE Alu -192 120 1 664 270 43 22 chrX 135873502 135873732 -41100408 - MIR SINE MIR -7 255 21 1686 164 14 17 chrX 135873772 135873898 -41100242 + AluJo SINE Alu 1 126 -186 288 0 0 0 chrX 135873898 135873930 -41100210 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 1686 164 14 17 chrX 135873930 135874096 -41100044 + AluJo SINE Alu 126 292 -20 614 78 0 0 chrX 135874796 135874929 -41099211 - AluSg/x SINE Alu 0 337 205 2256 87 38 0 chrX 135875966 135876254 -41097886 + AluSx SINE Alu 1 299 -13 2259 93 0 7 chrX 135876424 135876748 -41097392 + AluY SINE Alu 1 311 0 423 269 40 27 chrX 135876819 135876968 -41097172 - L2 LINE L2 -1 3312 3162 1799 122 33 56 chrX 135877130 135877433 -41096707 - AluSx SINE Alu -16 296 1 204 289 0 0 chrX 135877734 135877779 -41096361 + (TG)n Simple_repeat Simple_repeat 2 46 0 10877 193 65 21 chrX 135877966 135878841 -41095299 - L1MD2 LINE L1 -475 6278 5443 2692 88 24 118 chrX 135878841 135879191 -41094949 + MLT2D LTR ERVL 1 382 -32 216 0 0 0 chrX 135879191 135879215 -41094925 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 2692 88 24 118 chrX 135879215 135879231 -41094909 + MLT2D LTR ERVL 382 398 -16 2571 43 0 13 chrX 135879231 135879536 -41094604 - AluY SINE Alu -9 302 2 2692 88 24 118 chrX 135879536 135879625 -41094515 + MLT2D LTR ERVL 398 414 0 10877 193 65 21 chrX 135879625 135882100 -41092040 - L1MD2 LINE L1 -1310 5443 3078 262 67 44 0 chrX 135882100 135882145 -41091995 + (TA)n Simple_repeat Simple_repeat 1 47 0 10877 193 65 21 chrX 135882145 135883106 -41091034 - L1MD2 LINE L1 -3675 3078 2160 1940 146 3 10 chrX 135883106 135883407 -41090733 - AluJb SINE Alu -13 299 1 10877 193 65 21 chrX 135883407 135884630 -41089510 - L1MD2 LINE L1 -4593 2160 19 237 250 0 0 chrX 135884988 135885040 -41089100 + L2 LINE L2 3262 3313 0 232 364 58 0 chrX 135885335 135885456 -41088684 - L2 LINE L2 -942 2372 2245 354 304 22 30 chrX 135885472 135885607 -41088533 + MIR3 SINE MIR 34 167 -41 2854 109 3 3 chrX 135885745 135886120 -41088020 + THE1C LTR MaLR 1 375 0 189 0 0 0 chrX 135886547 135886568 -41087572 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1500 164 4 27 chrX 135886579 135886842 -41087298 - AluJo SINE Alu -55 257 1 848 164 8 0 chrX 135886845 135886973 -41087167 - AluJb SINE Alu -179 133 5 551 181 0 0 chrX 135887079 135887162 -41086978 + FRAM SINE Alu 65 147 -29 233 171 67 105 chrX 135887283 135887388 -41086752 - L1ME4a LINE L1 -38 6083 5983 731 206 53 0 chrX 135887401 135887532 -41086608 - AluJo SINE Alu -48 264 127 336 24 0 0 chrX 135887571 135887612 -41086528 + (CA)n Simple_repeat Simple_repeat 1 41 0 1269 241 83 22 chrX 135887612 135888023 -41086117 - L1ME4a LINE L1 -201 5920 5485 263 261 0 31 chrX 135888055 135888120 -41086020 - L2 LINE L2 -2 3270 3208 1628 202 96 5 chrX 135889078 135889455 -41084685 + L1ME1 LINE L1 5724 6134 -32 666 215 28 106 chrX 135889563 135889782 -41084358 + HAL1 LINE L1 2245 2479 -28 441 0 0 0 chrX 135889782 135889831 -41084309 + (TA)n Simple_repeat Simple_repeat 2 50 0 2535 68 10 0 chrX 135889841 135890149 -41083991 - AluY SINE Alu 0 311 1 666 215 28 106 chrX 135890149 135890202 -41083938 + HAL1 LINE L1 2488 2506 -1 648 245 99 7 chrX 135890205 135890356 -41083784 + MIR3 SINE MIR 16 180 -28 364 354 104 12 chrX 135890442 135890606 -41083534 - MIR3 SINE MIR -21 187 9 186 383 62 0 chrX 135892287 135892368 -41081772 - L2 LINE L2 -48 3224 3139 2314 88 0 10 chrX 135892475 135892771 -41081369 + AluSc SINE Alu 1 293 -16 2877 115 20 64 chrX 135892911 135893550 -41080590 + L1PB4 LINE L1 5358 6150 -6 268 172 0 17 chrX 135893568 135893626 -41080514 + MLT1E1 LTR MaLR 163 219 -435 1149 215 176 22 chrX 135894193 135894551 -41079589 + MLT1E1 LTR MaLR 201 613 -41 3021 171 19 6 chrX 135894637 135895170 -41078970 + L1MB5 LINE L1 5586 6125 -49 2343 91 3 3 chrX 135895180 135895489 -41078651 - AluSc SINE Alu 0 309 1 976 179 0 17 chrX 135895489 135895652 -41078488 - AluJb SINE Alu -14 298 137 565 230 103 39 chrX 135895764 135895968 -41078172 + L2 LINE L2 3083 3299 -14 1454 217 75 36 chrX 135896094 135896454 -41077686 - MLT1A2 LTR MaLR 0 374 1 2431 72 7 0 chrX 135896499 135896791 -41077349 - AluSg SINE Alu -16 294 1 779 191 7 27 chrX 135897348 135897495 -41076645 - AluJb SINE Alu -17 295 152 1305 145 0 20 chrX 135897495 135897695 -41076445 - AluJb SINE Alu -116 196 1 510 245 26 26 chrX 135897848 135897999 -41076141 + MIR SINE MIR 5 155 -107 267 253 23 0 chrX 135898002 135898089 -41076051 - L1MC4 LINE L1 -1339 6703 6615 238 311 0 0 chrX 135898014 135898104 -41076036 + L1MC4 LINE L1 6614 6703 -1339 * 867 243 19 5 chrX 135898706 135898912 -41075228 + MIR SINE MIR 41 249 -13 721 203 0 0 chrX 135899563 135899686 -41074454 + FLAM_C SINE Alu 11 133 -10 840 165 117 11 chrX 135900761 135900949 -41073191 - L1MA9 LINE L1 -38 6274 6067 4029 142 13 63 chrX 135900956 135901157 -41072983 - L1MA9 LINE L1 -372 5940 5731 1719 168 0 52 chrX 135901157 135901466 -41072674 - AluJo SINE Alu -19 293 1 4029 142 13 63 chrX 135901466 135902504 -41071636 - L1MA9 LINE L1 -581 5731 4643 1610 173 18 28 chrX 135902504 135902788 -41071352 - AluJo SINE Alu -22 290 10 4029 142 13 63 chrX 135902788 135902870 -41071270 - L1MA9 LINE L1 -1669 4643 4691 2665 51 0 0 chrX 135902870 135903181 -41070959 + AluY SINE Alu 1 311 0 4029 142 13 63 chrX 135903181 135903291 -41070849 - L1MA9 LINE L1 -1620 4692 4578 1113 118 0 0 chrX 135903299 135903451 -41070689 - AluSg/x SINE Alu -20 290 139 2037 123 0 43 chrX 135903480 135903804 -41070336 - AluSx SINE Alu -2 310 1 2377 153 25 23 chrX 135903805 135904237 -41069903 - L1MA9 LINE L1 -1953 4193 3761 211 162 0 0 chrX 135904466 135904503 -41069637 + MIR SINE MIR 156 192 -70 585 207 90 27 chrX 135904879 135904929 -41069211 - MIR SINE MIR -13 249 204 1848 139 3 36 chrX 135904929 135905231 -41068909 - AluJb SINE Alu -20 292 1 585 207 90 27 chrX 135905231 135905396 -41068744 - MIR SINE MIR -58 204 23 2437 97 0 0 chrX 135905886 135906196 -41067944 + AluSg SINE Alu 1 310 0 201 74 0 0 chrX 135906466 135906493 -41067647 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2403 94 3 0 chrX 135907679 135907988 -41066152 + AluSx SINE Alu 1 310 -2 458 307 13 20 chrX 135909204 135909357 -41064783 + MIR3 SINE MIR 46 197 -11 246 371 149 0 chrX 135909356 135909531 -41064609 - L3b LINE CR1 -88 1495 1295 * 847 256 57 32 chrX 135909909 135910155 -41063985 - MIR SINE MIR -3 259 8 375 280 0 0 chrX 135910486 135910579 -41063561 - MIR3 SINE MIR -6 202 110 490 29 29 0 chrX 135911400 135911468 -41062672 + (TAGA)n Simple_repeat Simple_repeat 2 71 0 664 231 63 32 chrX 135912711 135912932 -41061208 + L2 LINE L2 3086 3313 0 767 120 0 19 chrX 135913461 135913569 -41060571 + FRAM SINE Alu 52 157 -19 245 313 69 23 chrX 135913905 135914036 -41060104 + L1MC2 LINE L1 5586 5722 -2086 201 235 99 49 chrX 135914242 135914323 -41059817 + L2 LINE L2 2623 2707 -607 743 216 24 114 chrX 135914400 135914655 -41059485 + MIR SINE MIR 31 262 0 298 281 65 43 chrX 135915256 135915395 -41058745 + MIR3 SINE MIR 50 191 -17 189 0 0 0 chrX 135915959 135915980 -41058160 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2469 73 3 0 chrX 135916483 135916786 -41057354 - AluSp SINE Alu -9 304 1 505 325 81 7 chrX 135917164 135917377 -41056763 + MIR SINE MIR 4 224 -38 377 226 28 99 chrX 135917421 135917602 -41056538 + L1MC2 LINE L1 5849 6016 -328 * 1243 198 0 25 chrX 135917470 135917712 -41056428 + L1MB5 LINE L1 5889 6124 -50 257 253 113 47 chrX 135918932 135919082 -41055058 + L2 LINE L2 2507 2666 -648 180 111 0 0 chrX 135919115 135919142 -41054998 + (CATCC)n Simple_repeat Simple_repeat 3 29 0 301 321 49 95 chrX 135919142 135919385 -41054755 - L2 LINE L2 -12 3260 3029 188 98 0 49 chrX 135919988 135920029 -41054111 + (TTTTG)n Simple_repeat Simple_repeat 1 39 0 593 219 110 7 chrX 135920453 135920599 -41053541 + MIR3 SINE MIR 16 176 -32 3998 149 9 15 chrX 135920859 135921525 -41052615 - L1MB8 LINE L1 -3 6175 5514 23 0 0 0 chrX 135921673 135921696 -41052444 + AT_rich Low_complexity Low_complexity 1 23 0 1597 189 16 23 chrX 135921849 135922155 -41051985 - AluJo SINE Alu -8 304 1 472 256 0 40 chrX 135922468 135922593 -41051547 + MER94 DNA DNA 15 134 0 2214 125 0 0 chrX 135924081 135924377 -41049763 + AluSx SINE Alu 1 296 -16 278 180 0 49 chrX 135924428 135924489 -41049651 + L2 LINE L2 3214 3271 -1 2250 98 0 0 chrX 135925306 135925592 -41048548 - L1PA15 LINE L1 -15 6150 5865 3291 174 31 8 chrX 135926094 135926679 -41047461 - L1MB5 LINE L1 -7 6167 5570 186 167 0 0 chrX 135926981 135927017 -41047123 + CT-rich Low_complexity Low_complexity 1 36 0 392 358 86 16 chrX 135927017 135927204 -41046936 - L2 LINE L2 -1 3271 3072 379 193 73 73 chrX 135927195 135927304 -41046836 + L2 LINE L2 3127 3235 -37 * 872 157 7 7 chrX 135927345 135927485 -41046655 + AluJo SINE Alu 1 140 -172 1546 183 13 33 chrX 135927490 135927796 -41046344 + AluJo SINE Alu 11 310 -2 798 283 40 40 chrX 135928945 135929217 -41044923 - L2 LINE L2 -48 3224 2953 254 194 16 0 chrX 135929427 135929489 -41044651 + GA-rich Low_complexity Low_complexity 6 68 0 926 294 79 29 chrX 135929659 135930306 -41043834 + L1M4 LINE L1 3362 4040 -2106 738 275 113 0 chrX 135930318 135930448 -41043692 + MIR SINE MIR 3 117 -145 306 0 0 0 chrX 135930448 135930482 -41043658 + (TAA)n Simple_repeat Simple_repeat 2 35 0 738 275 113 0 chrX 135930482 135930580 -41043560 + MIR SINE MIR 117 257 -5 458 278 46 29 chrX 135930588 135930782 -41043358 + L1M4 LINE L1 4044 4239 -1907 1780 96 24 0 chrX 135930958 135931208 -41042932 - L1PA10 LINE L1 -1 6167 5912 237 357 148 20 chrX 135931208 135931513 -41042627 + L2 LINE L2 2413 2756 -558 379 251 135 37 chrX 135931823 135931986 -41042154 - MIR SINE MIR -70 192 14 243 258 0 15 chrX 135932588 135932654 -41041486 + MIR SINE MIR 156 220 -42 369 0 0 0 chrX 135933932 135933973 -41040167 + (TG)n Simple_repeat Simple_repeat 2 42 0 2202 102 0 14 chrX 135934939 135935233 -41038907 + AluSx SINE Alu 15 304 -8 1979 157 26 14 chrX 135935391 135935508 -41038632 - MER63 DNA MER1_type -26 1034 920 2255 99 10 3 chrX 135935508 135935810 -41038330 + AluSg SINE Alu 1 304 -6 1979 157 26 14 chrX 135935810 135936042 -41038098 - MER63 DNA MER1_type -140 920 681 3246 103 224 14 chrX 135936284 135936868 -41037272 + MER39 LTR ERV1 1 707 0 276 253 0 51 chrX 135937100 135937179 -41036961 + L2 LINE L2 3238 3312 -1 208 150 0 25 chrX 135937967 135938007 -41036133 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 661 223 14 0 chrX 135939161 135939309 -41034831 + MIR SINE MIR 92 241 -21 1107 239 91 31 chrX 135941717 135941854 -41032286 - L1MC4 LINE L1 -1 8041 7914 279 0 0 0 chrX 135941854 135941885 -41032255 + (CA)n Simple_repeat Simple_repeat 2 32 0 1107 239 91 31 chrX 135941885 135942266 -41031874 - L1MC4 LINE L1 -128 7914 7492 21 71 0 0 chrX 135942273 135942315 -41031825 + AT_rich Low_complexity Low_complexity 1 42 0 191 333 19 19 chrX 135942509 135942617 -41031523 + L2 LINE L2 2553 2660 -654 407 291 8 0 chrX 135942778 135942895 -41031245 + MIR SINE MIR 57 174 -88 186 322 0 0 chrX 135942939 135942998 -41031142 + L2 LINE L2 2990 3048 -224 1839 177 0 6 chrX 135943097 135943408 -41030732 - AluJo SINE Alu -3 309 1 560 174 11 0 chrX 135943737 135943829 -41030311 - Tigger5 DNA MER2_type 0 2323 2231 327 218 0 0 chrX 135943834 135943889 -41030251 - Tigger5 DNA MER2_type -2268 55 1 415 293 8 8 chrX 135943895 135944028 -41030112 - MIR SINE MIR -107 155 23 226 227 15 15 chrX 135944503 135944569 -41029571 + (TG)n Simple_repeat Simple_repeat 2 67 0 1523 91 46 0 chrX 135945524 135945743 -41028397 + L1PA10 LINE L1 5940 6168 0 665 211 156 35 chrX 135946186 135946236 -41027904 - MIR SINE MIR -21 241 198 562 101 13 0 chrX 135946236 135946315 -41027825 - MADE1 DNA Mariner 0 80 1 665 211 156 35 chrX 135946315 135946463 -41027677 - MIR SINE MIR -64 198 19 873 278 44 50 chrX 135946492 135946628 -41027512 + L1MEd LINE L1 701 836 -5283 2411 91 0 3 chrX 135946628 135946926 -41027214 - AluSx SINE Alu -15 297 1 873 278 44 50 chrX 135946926 135947314 -41026826 + L1MEd LINE L1 836 1222 -4897 571 173 26 90 chrX 135947443 135947599 -41026541 - MER106B DNA MER1_type 0 1059 914 284 318 195 19 chrX 135947653 135947914 -41026226 + L2 LINE L2 2966 3272 0 2196 195 67 118 chrX 135948356 135948476 -41025664 - MER63D DNA MER1_type -19 1042 917 1915 132 40 20 chrX 135948476 135948772 -41025368 + AluJo SINE Alu 1 302 -10 2196 195 67 118 chrX 135948772 135949167 -41024973 - MER63D DNA MER1_type -144 917 600 1886 171 3 0 chrX 135949167 135949465 -41024675 + AluJb SINE Alu 1 299 -13 2196 195 67 118 chrX 135949465 135949938 -41024202 - MER63D DNA MER1_type -461 600 104 226 292 0 0 chrX 135949953 135950001 -41024139 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1094 116 26 42 chrX 135950640 135950829 -41023311 - MER5A DNA MER1_type 0 189 4 290 235 108 10 chrX 135951352 135951454 -41022686 + L1ME4a LINE L1 5969 6080 -41 540 84 0 0 chrX 135951593 135951676 -41022464 + (TG)n Simple_repeat Simple_repeat 1 83 0 1318 215 118 12 chrX 135951676 135952015 -41022125 - L1ME3 LINE L1 -87 6075 5701 540 84 0 0 chrX 135952456 135952539 -41021601 + (TG)n Simple_repeat Simple_repeat 1 83 0 1039 248 128 11 chrX 135952540 135952891 -41021249 - L1ME2 LINE L1 -90 6074 5683 937 253 145 30 chrX 135953058 135953457 -41020683 - LTR16A LTR ERVL -5 445 1 221 261 14 14 chrX 135953467 135953536 -41020604 - MIR SINE MIR -192 70 2 4495 160 43 32 chrX 135954246 135955021 -41019119 + L1MB7 LINE L1 4822 5620 -564 1677 169 17 33 chrX 135955021 135955323 -41018817 + AluJo SINE Alu 1 297 -15 4495 160 43 32 chrX 135955323 135955800 -41018340 + L1MB7 LINE L1 5620 6091 -93 223 372 0 0 chrX 135955803 135955889 -41018251 - MIR SINE MIR -167 95 10 519 263 222 0 chrX 135956670 135956841 -41017299 + MIR SINE MIR 30 238 -24 265 333 11 16 chrX 135956911 135957100 -41017040 - L2 LINE L2 -179 3093 2906 200 154 51 0 chrX 135957886 135957925 -41016215 + G-rich Low_complexity Low_complexity 4 44 0 467 298 30 103 chrX 135958595 135958787 -41015353 + L3 LINE CR1 792 952 -625 1729 137 210 11 chrX 135958787 135958973 -41015167 - MSTA LTR MaLR 0 428 280 225 0 0 0 chrX 135958973 135958998 -41015142 + (GA)n Simple_repeat Simple_repeat 1 25 0 1729 137 210 11 chrX 135958998 135959168 -41014972 - MSTA LTR MaLR -148 280 1 467 298 30 103 chrX 135959168 135959304 -41014836 + L3 LINE CR1 952 1096 -481 558 211 0 64 chrX 135959352 135959508 -41014632 + L2 LINE L2 3167 3312 -1 206 346 128 26 chrX 135959520 135959676 -41014464 + L3 LINE CR1 1390 1561 -16 684 169 11 22 chrX 135960571 135960749 -41013391 + GA-rich Low_complexity Low_complexity 2 177 0 22 0 0 0 chrX 135960898 135960920 -41013220 + AT_rich Low_complexity Low_complexity 1 22 0 2465 80 3 0 chrX 135962766 135963067 -41011073 + AluSp SINE Alu 1 302 -11 741 225 158 5 chrX 135964200 135964422 -41009718 + MIR SINE MIR 2 257 -5 322 264 25 33 chrX 135964428 135964549 -41009591 + MER5A DNA MER1_type 52 171 -18 1673 238 116 36 chrX 135964597 135965425 -41008715 - L2 LINE L2 -1 3312 2420 1441 258 35 20 chrX 135965447 135966094 -41008046 + L2 LINE L2 2630 3282 -31 1468 203 75 57 chrX 135966099 135966553 -41007587 + MLT1C LTR MaLR 6 467 0 415 242 185 40 chrX 135966608 135966835 -41007305 - L2 LINE L2 -921 2393 2134 661 172 196 31 chrX 135966899 135967062 -41007078 + MER20 DNA MER1_type 30 219 0 771 280 63 4 chrX 135967535 135967774 -41006366 - MIR SINE MIR -8 254 2 654 37 0 0 chrX 135967902 135967983 -41006157 + (CTAAA)n Simple_repeat Simple_repeat 1 81 0 187 381 40 8 chrX 135968272 135968398 -41005742 - MIR3 SINE MIR -23 185 56 225 250 0 18 chrX 135968804 135968860 -41005280 + (CA)n Simple_repeat Simple_repeat 2 56 0 378 266 18 9 chrX 135969030 135969139 -41005001 + L2 LINE L2 3195 3304 -9 254 254 16 0 chrX 135969312 135969375 -41004765 - L1MC4 LINE L1 -589 7453 7390 328 233 0 0 chrX 135969406 135969479 -41004661 + L1MC4 LINE L1 7302 7374 -668 633 186 11 5 chrX 135969486 135969629 -41004511 - L1MC4 LINE L1 -733 7228 7107 2216 109 0 13 chrX 135969926 135970230 -41003910 - AluSx SINE Alu -12 300 1 225 0 0 0 chrX 135972819 135972844 -41001296 + (T)n Simple_repeat Simple_repeat 1 25 0 435 330 47 11 chrX 135973478 135973669 -41000471 + MIR3 SINE MIR 9 206 -2 1550 120 22 0 chrX 135974652 135974877 -40999263 - MER30 DNA MER1_type 0 230 1 470 249 91 12 chrX 135975076 135975185 -40998955 + MIR SINE MIR 84 212 -50 369 0 0 0 chrX 135975185 135975226 -40998914 + (TA)n Simple_repeat Simple_repeat 2 42 0 470 249 91 12 chrX 135975226 135975281 -40998859 + MIR SINE MIR 212 261 -1 359 338 118 55 chrX 135976169 135976642 -40997498 + L2 LINE L2 2256 2758 -556 589 276 14 7 chrX 135976958 135977103 -40997037 + MIR3 SINE MIR 22 167 -41 313 243 125 20 chrX 135977098 135977205 -40996935 + MER113 DNA MER1_type? 6 135 -386 * 2421 88 41 3 chrX 135977205 135977546 -40996594 - L1MB3 LINE L1 -4 6179 5826 313 243 125 20 chrX 135977546 135977590 -40996550 + MER113 DNA MER1_type? 135 173 -348 477 304 53 12 chrX 135977751 135977922 -40996218 + MER5B DNA MER1_type 1 178 0 2301 75 0 32 chrX 135978018 135978326 -40995814 + AluY SINE Alu 11 308 -3 267 31 0 0 chrX 135978326 135978358 -40995782 + (TA)n Simple_repeat Simple_repeat 2 33 0 183 80 0 0 chrX 135978433 135978458 -40995682 + (T)n Simple_repeat Simple_repeat 1 25 0 286 197 113 0 chrX 135978465 135978536 -40995604 + MIR SINE MIR 129 207 -55 484 328 98 32 chrX 135978553 135978891 -40995249 - L2 LINE L2 -13 3259 2900 198 0 0 0 chrX 135979782 135979804 -40994336 + (CAGC)n Simple_repeat Simple_repeat 4 25 0 696 265 56 5 chrX 135980721 135980917 -40993223 - MIR SINE MIR -2 260 55 210 37 0 0 chrX 135981008 135981035 -40993105 + (GA)n Simple_repeat Simple_repeat 1 27 0 297 242 50 83 chrX 135981455 135981575 -40992565 + L2 LINE L2 3179 3294 -19 218 302 0 0 chrX 135982879 135982932 -40991208 - MER5A DNA MER1_type -135 54 2 188 355 154 9 chrX 135983100 135983210 -40990930 + MIR SINE MIR 23 148 -60 986 128 67 17 chrX 135983295 135983475 -40990665 + MER53 DNA DNA 1 189 0 2395 63 0 16 chrX 135984076 135984392 -40989748 + AluY SINE Alu 1 311 0 404 205 90 8 chrX 135984653 135984775 -40989365 - L1ME4a LINE L1 -2 6119 5988 294 73 0 0 chrX 135984786 135984827 -40989313 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 245 290 10 60 chrX 135984827 135984915 -40989225 - L2 LINE L2 -13 3300 3216 2258 120 0 0 chrX 135984915 135985224 -40988916 + AluSx SINE Alu 1 309 -3 245 290 10 60 chrX 135985224 135985235 -40988905 - L2 LINE L2 -97 3216 3206 478 274 51 74 chrX 135985238 135985499 -40988641 - L1ME4a LINE L1 -156 5965 5712 2233 104 0 7 chrX 135985499 135985798 -40988342 + AluSq SINE Alu 1 297 -16 478 274 51 74 chrX 135985798 135985872 -40988268 - L1ME4a LINE L1 -409 5712 5638 1445 316 24 39 chrX 135985877 135986465 -40987675 + L2 LINE L2 2049 2627 -687 1167 157 28 143 chrX 135986465 135986822 -40987318 + MLT1A1 LTR MaLR 1 316 -49 448 233 9 26 chrX 135986822 135986938 -40987202 + L1MA9 LINE L1 6169 6282 -30 379 203 0 0 chrX 135986942 135987011 -40987129 + MLT1A1 LTR MaLR 297 365 0 862 317 69 19 chrX 135987011 135987653 -40986487 + L2 LINE L2 2623 3291 -22 6404 156 7 10 chrX 135987758 135989065 -40985075 + L1PA16 LINE L1 4125 5425 -741 2016 140 0 3 chrX 135989065 135989357 -40984783 + AluSx SINE Alu 1 291 -21 6404 156 7 10 chrX 135989357 135990088 -40984052 + L1PA16 LINE L1 5425 6157 -9 301 287 120 56 chrX 135990519 135990995 -40983145 + HAL1b LINE L1 419 755 -593 232 238 25 56 chrX 135991462 135991541 -40982599 + A-rich Low_complexity Low_complexity 4 77 -81 2205 113 3 22 chrX 135991541 135991859 -40982281 + AluSx SINE Alu 1 312 0 232 238 25 56 chrX 135991859 135991939 -40982201 + A-rich Low_complexity Low_complexity 77 158 0 301 93 56 19 chrX 135991957 135992040 -40982100 + (TA)n Simple_repeat Simple_repeat 2 91 -21 2290 90 0 7 chrX 135992040 135992329 -40981811 + AluSg SINE Alu 1 287 -23 301 93 56 19 chrX 135992329 135992352 -40981788 + (TA)n Simple_repeat Simple_repeat 91 112 0 21 0 0 0 chrX 135992365 135992386 -40981754 + AT_rich Low_complexity Low_complexity 1 21 0 335 259 70 54 chrX 135992386 135992468 -40981672 + L1ME2 LINE L1 4162 4241 -1905 2323 84 7 3 chrX 135992468 135992766 -40981374 + AluSg1 SINE Alu 1 299 -10 335 259 70 54 chrX 135992766 135992889 -40981251 + L1ME2 LINE L1 4241 4368 -1778 6097 190 123 21 chrX 135993152 135994638 -40979502 + L1MDa LINE L1 19 2054 -4486 2014 57 0 101 chrX 135994638 135994935 -40979205 - L1PA6 LINE L1 -7 6147 5881 6097 190 123 21 chrX 135994935 135995427 -40978713 + L1MDa LINE L1 2054 2494 -4046 332 203 0 14 chrX 135995430 135995504 -40978636 + L1MD2 LINE L1 5727 5799 -560 * 755 119 8 0 chrX 135995500 135995618 -40978522 + L1MDa LINE L1 1859 1977 -4563 * 1600 176 80 9 chrX 135995616 135995864 -40978276 + L1MD2 LINE L1 5804 6033 -326 2358 88 7 7 chrX 135995864 135996169 -40977971 - AluSp SINE Alu -8 305 1 1600 176 80 9 chrX 135996169 135996383 -40977757 + L1MD2 LINE L1 6033 6348 -11 1089 287 65 48 chrX 135996399 135996675 -40977465 + L1ME2 LINE L1 4501 4771 -1393 1902 112 87 0 chrX 135996675 135996951 -40977189 + AluSx SINE Alu 1 300 -12 1089 287 65 48 chrX 135996951 135998055 -40976085 + L1ME2 LINE L1 4771 5906 -258 239 200 0 29 chrX 136001615 136001685 -40972455 + CT-rich Low_complexity Low_complexity 1 68 0 2903 142 7 15 chrX 136001799 136002256 -40971884 - L1MB3 LINE L1 -7 6176 5724 813 198 53 48 chrX 136002408 136002615 -40971525 - MIR SINE MIR -48 214 7 378 211 13 0 chrX 136004017 136004093 -40970047 + L2 LINE L2 3237 3313 0 800 247 88 9 chrX 136004099 136004326 -40969814 + MIR SINE MIR 4 248 -14 325 323 71 7 chrX 136004342 136004497 -40969643 + MER117 DNA MER1_type 20 184 -13 1872 127 14 17 chrX 136004600 136004892 -40969248 - AluSx SINE Alu -21 291 1 1115 172 60 39 chrX 136006357 136006589 -40967551 + L1MB5 LINE L1 5928 6164 -10 * 3956 199 27 55 chrX 136006586 136006859 -40967281 + L1MB7 LINE L1 3719 3998 -2148 2184 107 0 0 chrX 136006859 136007149 -40966991 + AluSx SINE Alu 21 310 -2 3956 199 27 55 chrX 136007149 136007869 -40966271 + L1MB7 LINE L1 3998 4684 -1462 * 4932 141 34 48 chrX 136007859 136008033 -40966107 + L1MB7 LINE L1 5004 5179 -1005 1473 191 0 8 chrX 136008033 136008284 -40965856 - AluJb SINE Alu -58 254 6 4932 141 34 48 chrX 136008284 136008622 -40965518 + L1MB7 LINE L1 5179 5520 -664 1761 135 28 21 chrX 136008622 136008910 -40965230 + AluJo SINE Alu 1 290 -22 2431 94 0 0 chrX 136008914 136009222 -40964918 + AluSg SINE Alu 1 308 -2 4932 141 34 48 chrX 136009222 136009419 -40964721 + L1MB7 LINE L1 5523 5721 -463 877 182 0 0 chrX 136009419 136009551 -40964589 - FLAM_A SINE Alu -1 132 1 4932 141 34 48 chrX 136009551 136010029 -40964111 + L1MB7 LINE L1 5721 6168 -16 536 233 70 0 chrX 136010035 136010207 -40963933 + Charlie2 DNA MER1_type 1980 2163 -699 731 190 0 0 chrX 136010208 136010324 -40963816 + FLAM_A SINE Alu 13 128 -14 1494 191 143 49 chrX 136010328 136010640 -40963500 + Charlie2 DNA MER1_type 2154 2435 -427 1605 171 10 26 chrX 136010640 136010944 -40963196 - AluJo SINE Alu -13 299 1 1494 191 143 49 chrX 136010944 136011239 -40962901 + Charlie2 DNA MER1_type 2435 2818 -44 1898 184 29 36 chrX 136011248 136011662 -40962478 + L1MD3 LINE L1 7523 7933 -62 453 248 112 6 chrX 136011862 136012023 -40962117 - L1ME4a LINE L1 -2 6119 5942 2254 98 7 3 chrX 136012053 136012349 -40961791 + AluJb SINE Alu 1 297 -15 605 229 129 0 chrX 136012392 136012532 -40961608 + MIR SINE MIR 104 261 -1 297 250 80 89 chrX 136012660 136012731 -40961409 - MIR SINE MIR -151 111 40 1069 205 16 0 chrX 136012731 136012916 -40961224 - MER5A DNA MER1_type -1 188 1 297 250 80 89 chrX 136012916 136012956 -40961184 - MIR SINE MIR -222 40 1 190 283 29 109 chrX 136012960 136013044 -40961096 + L2 LINE L2 2721 2791 -523 2159 116 7 13 chrX 136013044 136013347 -40960793 + AluSx SINE Alu 2 302 -10 190 283 29 109 chrX 136013347 136013400 -40960740 + L2 LINE L2 2791 2847 -467 2438 76 3 3 chrX 136013875 136014178 -40959962 + AluSc SINE Alu 1 303 -6 4350 215 50 23 chrX 136014955 136016195 -40957945 + L1M4c LINE L1 696 2055 -4329 355 279 85 16 chrX 136016203 136016332 -40957808 - MIR SINE MIR -122 140 3 248 284 32 53 chrX 136016413 136016508 -40957632 + L2 LINE L2 3200 3292 -21 849 227 13 62 chrX 136016602 136016864 -40957276 - MIR SINE MIR -12 250 1 2307 113 3 0 chrX 136017114 136017425 -40956715 - AluSq SINE Alu -1 312 1 1956 137 3 27 chrX 136017783 136018083 -40956057 - AluJo SINE Alu -19 293 1 218 326 34 0 chrX 136018297 136018386 -40955754 + L2 LINE L2 2186 2277 -1037 277 281 269 0 chrX 136018517 136018677 -40955463 + MIR SINE MIR 44 246 -16 739 200 21 14 chrX 136019174 136019319 -40954821 + AluJb SINE Alu 103 248 -64 271 313 126 22 chrX 136022381 136022563 -40951577 - MIR SINE MIR -26 236 36 186 133 0 0 chrX 136022764 136022794 -40951346 + (A)n Simple_repeat Simple_repeat 1 30 0 321 118 0 0 chrX 136022963 136023014 -40951126 + (GA)n Simple_repeat Simple_repeat 2 52 0 195 129 0 0 chrX 136023292 136023323 -40950817 + (A)n Simple_repeat Simple_repeat 1 31 0 2422 88 0 10 chrX 136023330 136023636 -40950504 + AluSc SINE Alu 1 303 -6 204 279 15 15 chrX 136025465 136025533 -40948607 + GA-rich Low_complexity Low_complexity 2 69 0 1627 227 37 22 chrX 136027160 136027370 -40946770 + L1ME3A LINE L1 5574 5779 -391 2413 83 3 0 chrX 136027370 136027671 -40946469 + AluSp SINE Alu 1 302 -11 1627 227 37 22 chrX 136027671 136027869 -40946271 + L1ME3A LINE L1 5779 5988 -182 1406 213 130 43 chrX 136027894 136028354 -40945786 + MLT1D LTR MaLR 6 505 0 733 177 0 0 chrX 136028359 136028483 -40945657 + L1ME3A LINE L1 6042 6165 -5 2460 90 0 0 chrX 136029641 136029953 -40944187 + AluSx SINE Alu 1 312 0 243 123 15 46 chrX 136030244 136030309 -40943831 + GA-rich Low_complexity Low_complexity 2 64 0 281 295 18 96 chrX 136030695 136030861 -40943279 - L2 LINE L2 -4 3268 3116 2250 105 10 3 chrX 136031337 136031643 -40942497 + AluSx SINE Alu 1 308 -4 643 286 16 5 chrX 136031752 136031944 -40942196 + MIR SINE MIR 63 256 -6 254 176 68 54 chrX 136032011 136032085 -40942055 + MIR SINE MIR 28 103 -105 560 247 101 86 chrX 136032493 136032760 -40941380 - MLT1L LTR MaLR -223 392 122 233 313 12 25 chrX 136035126 136035206 -40938934 - L3 LINE CR1 -1 1576 1498 196 320 123 8 chrX 136035228 136035350 -40938790 - MIR3 SINE MIR -51 157 22 2397 78 0 0 chrX 136035391 136035684 -40938456 + AluSq SINE Alu 9 301 -12 2072 135 3 0 chrX 136036370 136036673 -40937467 + AluJb SINE Alu 1 304 -8 829 186 0 0 chrX 136036686 136036815 -40937325 + AluJb SINE Alu 139 267 -45 905 218 0 68 chrX 136037953 136038010 -40936130 - MER3 DNA MER1_type -4 205 146 2046 118 10 25 chrX 136038010 136038153 -40935987 + AluSx SINE Alu 1 145 -167 675 62 0 0 chrX 136038153 136038250 -40935890 + (TA)n Simple_repeat Simple_repeat 2 98 0 2046 118 10 25 chrX 136038250 136038420 -40935720 + AluSx SINE Alu 145 309 -3 905 218 0 68 chrX 136038420 136038582 -40935558 - MER3 DNA MER1_type -63 146 1 192 40 0 0 chrX 136038654 136038679 -40935461 + (CAA)n Simple_repeat Simple_repeat 1 25 0 278 218 9 55 chrX 136041319 136041429 -40932711 + L1ME4a LINE L1 6006 6110 -11 204 40 0 0 chrX 136042028 136042053 -40932087 + (T)n Simple_repeat Simple_repeat 1 25 0 370 283 67 108 chrX 136042606 136042829 -40931311 - L2 LINE L2 -1 3271 3058 660 222 30 129 chrX 136042872 136043126 -40931014 - L1MC/D LINE L1 -743 5403 5125 2238 84 37 0 chrX 136043126 136043424 -40930716 - AluY SINE Alu -2 309 1 660 222 30 129 chrX 136043424 136043841 -40930299 - L1MC/D LINE L1 -1021 5125 4859 2499 54 0 0 chrX 136043841 136044136 -40930004 + AluY SINE Alu 1 295 -16 660 222 30 129 chrX 136044136 136044205 -40929935 - L1MC/D LINE L1 -1287 4859 4785 2529 222 65 64 chrX 136044279 136045226 -40928914 + L1MC4 LINE L1 7095 8042 0 * 5658 141 58 12 chrX 136045223 136046430 -40927710 + L1MA4A LINE L1 4288 5616 -687 2259 106 0 0 chrX 136046430 136046722 -40927418 - AluSg SINE Alu -18 292 1 5658 141 58 12 chrX 136046722 136047418 -40926722 + L1MA4A LINE L1 5616 6278 -25 21 0 0 0 chrX 136047418 136047439 -40926701 + AT_rich Low_complexity Low_complexity 1 21 0 1060 126 0 0 chrX 136047479 136047622 -40926518 - U4 snRNA snRNA -2 143 1 871 214 232 29 chrX 136047671 136047951 -40926189 + L1MC4 LINE L1 5574 5910 -1898 1289 244 180 11 chrX 136047956 136048390 -40925750 + MLT1H LTR MaLR 10 516 -33 273 243 54 0 chrX 136048701 136048776 -40925364 + L1P5 LINE L1 5490 5571 -558 433 219 124 34 chrX 136049014 136049192 -40924948 + L1ME LINE L1 5602 5795 -326 234 278 35 17 chrX 136049285 136049400 -40924740 - L1ME3A LINE L1 -63 6107 5991 240 245 133 10 chrX 136049502 136049600 -40924540 - L1ME3A LINE L1 -63 6107 5998 267 197 118 0 chrX 136049614 136049690 -40924450 - L1ME3 LINE L1 -57 6105 6021 2319 80 19 22 chrX 136049814 136050125 -40924015 + AluSg SINE Alu 1 310 0 219 231 0 66 chrX 136050790 136050812 -40923328 + A-rich Low_complexity Low_complexity 4 26 -62 2375 87 13 0 chrX 136050812 136051121 -40923019 + AluSq SINE Alu 1 313 0 219 231 0 66 chrX 136051121 136051189 -40922951 + A-rich Low_complexity Low_complexity 26 88 0 420 216 52 88 chrX 136051284 136051478 -40922662 + MER113 DNA MER1_type? 19 205 -316 257 299 0 0 chrX 136052018 136052085 -40922055 - L2 LINE L2 -9 3304 3238 442 226 12 83 chrX 136052204 136052372 -40921768 + MER113 DNA MER1_type? 42 197 -324 247 346 24 8 chrX 136052372 136052499 -40921641 + L2 LINE L2 1828 1956 -1358 2105 60 0 8 chrX 136052563 136052815 -40921325 - AluSc SINE Alu -11 298 49 201 338 68 0 chrX 136053039 136053113 -40921027 + L2 LINE L2 2966 3044 -228 2334 92 3 0 chrX 136053226 136053519 -40920621 - AluSx SINE Alu -18 294 1 208 149 128 0 chrX 136053544 136053591 -40920549 + L2 LINE L2 3261 3313 0 3026 200 133 30 chrX 136053753 136054636 -40919504 + L1MC4 LINE L1 6427 7419 -623 294 139 139 0 chrX 136054652 136054724 -40919416 + MER67B LTR ERV1 580 661 0 383 336 0 0 chrX 136054764 136054880 -40919260 - L2 LINE L2 -806 2508 2393 253 233 14 41 chrX 136054902 136054975 -40919165 + L1MC4 LINE L1 7676 7746 -296 22 35 0 0 chrX 136054980 136055009 -40919131 + AT_rich Low_complexity Low_complexity 1 29 0 708 118 0 11 chrX 136055009 136055102 -40919038 - FLAM_C SINE Alu -23 120 29 842 148 51 182 chrX 136055120 136055474 -40918666 + L1MC4 LINE L1 7743 8035 -7 2105 116 45 0 chrX 136055475 136055767 -40918373 - AluSx SINE Alu -7 305 1 2299 107 0 7 chrX 136055822 136056131 -40918009 + AluSq SINE Alu 1 307 -6 2335 100 0 0 chrX 136056181 136056472 -40917668 - AluSc SINE Alu -16 293 3 27 0 0 0 chrX 136058912 136058939 -40915201 + AT_rich Low_complexity Low_complexity 1 27 0 198 295 72 66 chrX 136060165 136060331 -40913809 + L2 LINE L2 1744 1910 -1404 675 297 26 115 chrX 136060534 136060881 -40913259 - L2 LINE L2 0 3272 2957 227 304 0 0 chrX 136060975 136061031 -40913109 + MIR SINE MIR 24 79 -129 30 0 0 0 chrX 136061954 136061984 -40912156 + AT_rich Low_complexity Low_complexity 1 30 0 2445 48 41 3 chrX 136062519 136062812 -40911328 + AluY SINE Alu 1 304 -7 198 0 0 0 chrX 136063356 136063378 -40910762 + (TG)n Simple_repeat Simple_repeat 2 23 0 294 29 0 0 chrX 136063886 136063921 -40910219 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 1961 150 7 0 chrX 136064517 136064817 -40909323 + AluJb SINE Alu 3 304 -8 2238 81 3 27 chrX 136064817 136065114 -40909026 + AluSp SINE Alu 1 290 -23 2261 94 3 16 chrX 136065156 136065464 -40908676 - AluSx SINE Alu -8 304 1 2435 60 13 10 chrX 136065493 136065795 -40908345 + AluSp SINE Alu 1 303 -10 2482 54 0 7 chrX 136066089 136066384 -40907756 - AluY SINE Alu -18 293 1 2171 126 10 0 chrX 136066417 136066719 -40907421 + AluSx SINE Alu 1 305 -7 2234 89 7 10 chrX 136067564 136067868 -40906272 + AluSx SINE Alu 1 303 -9 38 51 0 0 chrX 136068955 136069014 -40905126 + AT_rich Low_complexity Low_complexity 1 59 0 2234 98 7 7 chrX 136070715 136071010 -40903130 + AluSx SINE Alu 1 295 -17 2017 132 0 32 chrX 136071059 136071369 -40902771 + AluSx SINE Alu 1 300 -12 1986 114 34 20 chrX 136071458 136071755 -40902385 + AluSq SINE Alu 1 301 -12 1589 139 52 8 chrX 136071765 136072032 -40902108 - AluJb SINE Alu -16 296 18 1306 165 4 40 chrX 136072612 136072717 -40901423 - L1MA9 LINE L1 -5 6307 6200 2257 112 3 0 chrX 136072717 136073012 -40901128 - AluSq SINE Alu -17 296 1 1306 165 4 40 chrX 136073012 136073154 -40900986 - L1MA9 LINE L1 -112 6200 6069 2166 123 0 7 chrX 136073504 136073806 -40900334 + AluSq SINE Alu 1 300 -13 2221 110 17 0 chrX 136073946 136074247 -40899893 + AluSc SINE Alu 1 306 -3 2358 92 3 3 chrX 136074367 136074670 -40899470 - AluSq SINE Alu -10 303 1 1927 128 6 58 chrX 136074877 136075205 -40898935 - AluJo SINE Alu -1 311 1 403 174 81 4 chrX 136075295 136075824 -40898316 + (TA)n Simple_repeat Simple_repeat 1 569 0 1694 126 24 105 chrX 136077808 136078142 -40895998 - AluYb8 SINE Alu -11 307 1 204 336 67 35 chrX 136078399 136078744 -40895396 - L2 LINE L2 -1217 2097 1742 181 346 127 13 chrX 136079100 136079328 -40894812 + L2 LINE L2 2325 2578 -736 237 293 0 0 chrX 136079598 136079656 -40894484 - MIR SINE MIR -57 151 94 434 262 7 51 chrX 136079901 136080063 -40894077 + MIR SINE MIR 43 196 -63 448 288 68 0 chrX 136082043 136082175 -40891965 - MIR3 SINE MIR -32 176 36 227 146 0 42 chrX 136083452 136083500 -40890640 + L1PA15-16 LINE L1 629 674 -6175 237 55 0 91 chrX 136083581 136083636 -40890504 + (CGGGGG)n Simple_repeat Simple_repeat 2 51 0 394 320 6 39 chrX 136083636 136083862 -40890278 + GA-rich Low_complexity Low_complexity 1 218 0 247 239 13 32 chrX 136083862 136084017 -40890123 + G-rich Low_complexity Low_complexity 2 153 0 2321 74 3 26 chrX 136085081 136085391 -40888749 - AluSx SINE Alu -9 303 1 271 311 0 0 chrX 136085410 136085478 -40888662 - MIR SINE MIR -5 257 187 2023 103 148 3 chrX 136085478 136085808 -40888332 - MER83B LTR ERV1 0 378 1 271 311 0 0 chrX 136085808 136085829 -40888311 - MIR SINE MIR -74 188 168 3370 143 48 69 chrX 136085829 136086187 -40887953 - MER83B-int LTR ERV1 -22 4858 4494 189 0 0 0 chrX 136086187 136086208 -40887932 + (CAAA)n Simple_repeat Simple_repeat 1 21 0 3370 143 48 69 chrX 136086208 136086951 -40887189 - MER83B-int LTR ERV1 -386 4494 3145 2149 87 35 17 chrX 136086951 136087240 -40886900 + AluSq SINE Alu 1 294 -19 3370 143 48 69 chrX 136087240 136087270 -40886870 - MER83B-int LTR ERV1 -1735 3145 3116 2239 89 0 33 chrX 136087281 136087585 -40886555 + AluSg SINE Alu 1 294 -16 866 114 30 8 chrX 136087585 136087717 -40886423 + AluSg/x SINE Alu 135 269 -43 11551 143 50 27 chrX 136087719 136087780 -40886360 - MER83B-int LTR ERV1 -2793 2087 2029 2422 75 0 0 chrX 136087780 136088072 -40886068 + AluSc SINE Alu 1 292 -17 11551 143 50 27 chrX 136088072 136089354 -40884786 - MER83B-int LTR ERV1 -2851 2029 682 2396 86 0 3 chrX 136089354 136089655 -40884485 - AluSx SINE Alu -12 300 1 11551 143 50 27 chrX 136089655 136090298 -40883842 - MER83B-int LTR ERV1 -4198 682 55 1995 98 175 15 chrX 136090318 136090644 -40883496 - MER83B LTR ERV1 0 378 1 807 260 56 0 chrX 136092433 136092629 -40881511 + MIR SINE MIR 56 262 0 2465 64 3 0 chrX 136092886 136093181 -40880959 + AluSp SINE Alu 1 296 -17 495 254 60 27 chrX 136093338 136093523 -40880617 - MARNA DNA Mariner -381 205 15 2554 40 3 7 chrX 136093607 136093908 -40880232 + AluSq SINE Alu 4 303 -10 2273 92 0 22 chrX 136095448 136095626 -40878514 - AluSx SINE Alu -3 309 140 2507 54 0 0 chrX 136095626 136095950 -40878190 - AluY SINE Alu 0 311 1 2273 92 0 22 chrX 136095950 136096087 -40878053 - AluSx SINE Alu -172 140 1 909 171 29 23 chrX 136096151 136096380 -40877760 + MER106B DNA MER1_type 5 1058 -1 2443 76 0 0 chrX 136096433 136096735 -40877405 - AluY SINE Alu -9 302 1 462 253 171 13 chrX 136096904 136097062 -40877078 - MIR3 SINE MIR -3 205 23 1495 80 60 0 chrX 136098668 136098869 -40875271 - AluSc SINE Alu -10 299 87 1034 104 8 0 chrX 136098869 136099003 -40875137 - AluSg SINE Alu -175 135 1 1208 203 0 0 chrX 136099020 136099232 -40874908 + MER58A DNA MER1_type 9 220 -4 472 184 29 10 chrX 136100805 136100908 -40873232 + L1MD2 LINE L1 6253 6357 -2 630 168 48 32 chrX 136100917 136101042 -40873098 + FLAM_A SINE Alu 1 127 -6 706 187 68 87 chrX 136101115 136101334 -40872806 - Charlie8 DNA MER1_type -2173 244 30 2414 75 0 19 chrX 136101687 136101995 -40872145 + AluSx SINE Alu 1 302 -10 716 147 73 37 chrX 136102178 136102314 -40871826 - MER5A DNA MER1_type 0 189 49 716 140 0 0 chrX 136102705 136102812 -40871328 - L1MB5 LINE L1 -8 6166 6060 1037 195 30 64 chrX 136102837 136102939 -40871201 - L1M4 LINE L1 -2095 4051 3947 2321 112 3 6 chrX 136102939 136103252 -40870888 - AluSx SINE Alu 0 312 1 1037 195 30 64 chrX 136103252 136103583 -40870557 - L1M4 LINE L1 -2199 3947 3572 2381 87 3 3 chrX 136103583 136103893 -40870247 - AluSq SINE Alu -3 310 1 1037 195 30 64 chrX 136103893 136104049 -40870091 - L1M4 LINE L1 -2574 3572 3412 2160 100 17 0 chrX 136104164 136104477 -40869663 + AluSx SINE Alu 1 312 0 190 150 100 0 chrX 136104616 136104656 -40869484 - L2 LINE L2 0 3313 3270 1996 300 113 38 chrX 136104773 136105917 -40868223 - L2 LINE L2 -235 3037 1813 499 218 60 15 chrX 136105960 136106093 -40868047 + MIR SINE MIR 121 259 -3 26 30 0 0 chrX 136106138 136106171 -40867969 + AT_rich Low_complexity Low_complexity 1 33 0 2386 86 23 0 chrX 136106203 136106505 -40867635 - AluSg SINE Alu 0 310 2 738 167 18 162 chrX 136106820 136106876 -40867264 - MLT1L LTR MaLR -6 609 547 2313 110 0 0 chrX 136106876 136107185 -40866955 + AluSx SINE Alu 3 311 -1 738 167 18 162 chrX 136107185 136107350 -40866790 - MLT1L LTR MaLR -68 547 420 1495 104 4 101 chrX 136107703 136107971 -40866169 + L1MB2 LINE L1 5928 6169 -2 2127 117 0 3 chrX 136108010 136108300 -40865840 + AluSx SINE Alu 1 289 -23 304 213 67 13 chrX 136108300 136108375 -40865765 - L1MC4 LINE L1 -1350 6692 6614 207 0 0 0 chrX 136108516 136108539 -40865601 + (A)n Simple_repeat Simple_repeat 1 23 0 1851 69 31 46 chrX 136109955 136110127 -40864013 + L1PA14 LINE L1 5904 6072 -89 2379 99 0 7 chrX 136110127 136110429 -40863711 + AluSx SINE Alu 1 300 -12 1851 69 31 46 chrX 136110429 136110516 -40863624 + L1PA14 LINE L1 6072 6159 -2 198 236 0 0 chrX 136110770 136110825 -40863315 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 272 250 0 54 chrX 136110827 136110919 -40863221 - L1MC4 LINE L1 -1342 6700 6614 967 239 85 24 chrX 136111134 136111427 -40862713 + L1MC1 LINE L1 5460 5770 -351 583 253 58 35 chrX 136111443 136111617 -40862523 + MIR SINE MIR 45 222 -40 234 211 144 0 chrX 136111625 136111715 -40862425 + L1MC1 LINE L1 5775 5877 -244 2290 104 0 22 chrX 136111789 136112106 -40862034 + AluSx SINE Alu 1 310 -2 1957 162 31 12 chrX 136112111 136112438 -40861702 + L1MC1 LINE L1 6000 6332 -1 328 232 0 0 chrX 136112600 136112669 -40861471 - MIR SINE MIR 0 262 194 1841 132 19 42 chrX 136112934 136113245 -40860895 - AluSx SINE Alu -6 306 3 2064 111 0 21 chrX 136114218 136114538 -40859602 - AluSx SINE Alu 0 314 1 209 372 171 25 chrX 136114914 136115282 -40858858 + L2 LINE L2 2804 3225 -47 342 0 0 0 chrX 136115282 136115320 -40858820 + (TC)n Simple_repeat Simple_repeat 2 39 0 258 32 0 0 chrX 136115319 136115350 -40858790 + (TA)n Simple_repeat Simple_repeat 1 31 0 * 536 194 120 9 chrX 136115350 136115458 -40858682 - AluJb SINE Alu -191 121 2 1412 101 0 0 chrX 136115485 136115664 -40858476 - AluSx SINE Alu -133 179 1 22 0 0 0 chrX 136116724 136116746 -40857394 + AT_rich Low_complexity Low_complexity 1 22 0 264 300 0 0 chrX 136116973 136117063 -40857077 + (TG)n Simple_repeat Simple_repeat 1 90 0 312 329 185 10 chrX 136117237 136117432 -40856708 - MIR SINE MIR -25 237 13 2495 77 3 0 chrX 136117579 136117891 -40856249 - AluSq SINE Alu 0 313 1 23 54 0 0 chrX 136118157 136118194 -40855946 + AT_rich Low_complexity Low_complexity 1 37 0 2311 110 0 7 chrX 136118317 136118626 -40855514 - AluSx SINE Alu -4 308 2 249 220 0 0 chrX 136118779 136118838 -40855302 + MIR SINE MIR 137 195 -67 22 35 0 0 chrX 136118862 136118891 -40855249 + AT_rich Low_complexity Low_complexity 1 29 0 4859 80 7 41 chrX 136118899 136119254 -40854886 - L1MA2 LINE L1 -38 6266 5901 2394 77 10 0 chrX 136119254 136119551 -40854589 + AluSx SINE Alu 1 300 -12 4859 80 7 41 chrX 136119551 136119653 -40854487 - L1MA2 LINE L1 -403 5901 5797 2312 94 7 3 chrX 136119653 136119961 -40854179 - AluSx SINE Alu -3 309 1 4859 80 7 41 chrX 136119961 136120216 -40853924 - L1MA2 LINE L1 -507 5797 5577 738 193 7 27 chrX 136120238 136120388 -40853752 - MER8 DNA MER2_type -92 147 1 483 228 151 77 chrX 136120420 136120801 -40853339 - L1MC5 LINE L1 -44 7917 7485 6966 75 14 0 chrX 136120801 136122157 -40851983 - L1PA8A LINE L1 -2 6129 4765 483 228 151 77 chrX 136122157 136122306 -40851834 - L1MC5 LINE L1 -476 7485 7348 1903 98 0 85 chrX 136122308 136122643 -40851497 - AluSx SINE Alu 0 312 1 1745 175 0 10 chrX 136122907 136123079 -40851061 - AluJo SINE Alu -7 305 136 2347 98 0 19 chrX 136123079 136123396 -40850744 - AluSx SINE Alu -1 311 1 1745 175 0 10 chrX 136123396 136123531 -40850609 - AluJo SINE Alu -176 136 1 2199 157 152 7 chrX 136123637 136124045 -40850095 - MLT1C LTR MaLR 0 467 1 823 187 0 0 chrX 136124181 136124304 -40849836 + FLAM_C SINE Alu 2 124 -9 2199 107 0 13 chrX 136124322 136124621 -40849519 + AluSx SINE Alu 1 295 -17 184 163 163 0 chrX 136124650 136124693 -40849447 - L2 LINE L2 -1 3271 3222 23 54 0 0 chrX 136124883 136124920 -40849220 + AT_rich Low_complexity Low_complexity 1 37 0 2277 71 35 0 chrX 136125578 136125861 -40848279 - AluY SINE Alu -18 293 1 21 0 0 0 chrX 136125861 136125882 -40848258 + AT_rich Low_complexity Low_complexity 1 21 0 9904 24 2 201 chrX 136125896 136127624 -40846516 + SVA Other Other 1 1384 -2 513 291 143 9 chrX 136127713 136127943 -40846197 - MIR SINE MIR 0 262 2 248 404 39 19 chrX 136127992 136128200 -40845940 + L2 LINE L2 2813 3024 -248 1509 183 14 25 chrX 136128200 136128513 -40845627 - AluJo SINE Alu 0 310 1 594 207 62 42 chrX 136128597 136128790 -40845350 - Charlie7 DNA MER1_type -6 2606 2410 2263 119 3 3 chrX 136128798 136129110 -40845030 + AluSx SINE Alu 1 312 0 900 179 0 0 chrX 136129116 136129267 -40844873 + AluSg/x SINE Alu 162 312 0 3369 184 27 59 chrX 136129267 136129579 -40844561 - L1M3 LINE L1 -713 5467 5147 2439 70 0 0 chrX 136129579 136129866 -40844274 + AluY SINE Alu 3 289 -22 2424 82 0 0 chrX 136129868 136130161 -40843979 + AluSq SINE Alu 3 295 -18 2159 103 7 0 chrX 136130171 136130463 -40843677 + AluSg SINE Alu 1 294 -16 3369 184 27 59 chrX 136130463 136130809 -40843331 - L1M3 LINE L1 -1043 5137 4781 2654 46 0 0 chrX 136130809 136131116 -40843024 - AluY SINE Alu -4 307 1 3369 184 27 59 chrX 136131116 136131165 -40842975 - L1M3 LINE L1 -1399 4781 4732 1906 143 0 7 chrX 136131165 136131444 -40842696 - AluSx SINE Alu -5 307 31 3369 184 27 59 chrX 136131444 136131727 -40842413 - L1M3 LINE L1 -1448 4732 4506 441 275 12 25 chrX 136131765 136131925 -40842215 - HAL1b LINE L1 -7 1341 1184 906 149 0 15 chrX 136132802 136132936 -40841204 - FLAM_C SINE Alu -1 132 1 2423 107 49 22 chrX 136133226 136133591 -40840549 - THE1C LTR MaLR 0 375 1 786 224 5 49 chrX 136134865 136135088 -40839052 - L1ME1 LINE L1 0 6166 5954 2406 81 3 0 chrX 136135358 136135654 -40838486 + AluSp SINE Alu 1 297 -16 2190 127 0 3 chrX 136135969 136136283 -40837857 + AluSq SINE Alu 1 313 0 30 71 0 31 chrX 136136501 136136599 -40837541 + AT_rich Low_complexity Low_complexity 1 95 0 2370 86 0 7 chrX 136137120 136137421 -40836719 - AluSx SINE Alu 0 312 14 2317 107 0 0 chrX 136138513 136138811 -40835329 + AluSx SINE Alu 1 298 -14 2082 107 0 0 chrX 136139452 136139723 -40834417 + AluSx SINE Alu 1 271 -41 225 0 0 0 chrX 136139734 136139759 -40834381 + (TAA)n Simple_repeat Simple_repeat 2 26 0 244 216 0 14 chrX 136139937 136140011 -40834129 + L1ME4a LINE L1 6049 6121 0 2044 135 0 13 chrX 136140315 136140626 -40833514 - AluJb SINE Alu -4 308 2 2247 123 0 0 chrX 136140867 136141177 -40832963 - AluSg SINE Alu 0 310 1 26 62 0 15 chrX 136142363 136142412 -40831728 + AT_rich Low_complexity Low_complexity 1 50 -14 2454 75 0 0 chrX 136142412 136142705 -40831435 + AluY SINE Alu 1 293 -18 26 62 0 15 chrX 136142705 136142720 -40831420 + AT_rich Low_complexity Low_complexity 50 64 0 2381 77 3 3 chrX 136143448 136143747 -40830393 - AluSx SINE Alu -13 299 1 2276 98 0 3 chrX 136143989 136144286 -40829854 + AluSx SINE Alu 1 296 -16 2279 169 72 25 chrX 136144360 136144804 -40829336 - MLT1C LTR MaLR 0 467 3 185 375 21 10 chrX 136145140 136145236 -40828904 - L2 LINE L2 -8 3264 3168 471 324 65 0 chrX 136145354 136145539 -40828601 - L3 LINE CR1 -6 1571 1375 681 234 42 12 chrX 136146336 136146503 -40827637 + MIR3 SINE MIR 34 205 -3 1769 163 24 3 chrX 136147359 136147647 -40826493 - AluSx SINE Alu -16 296 3 1776 209 64 26 chrX 136147686 136148255 -40825885 + L1MB4 LINE L1 5463 6071 -109 2305 98 0 0 chrX 136148255 136148551 -40825589 + AluSg SINE Alu 1 296 -14 1776 209 64 26 chrX 136148551 136148641 -40825499 + L1MB4 LINE L1 6071 6156 -24 513 19 0 252 chrX 136148708 136148761 -40825379 - MADE1 DNA Mariner 0 80 66 1495 67 0 10 chrX 136148761 136148954 -40825186 + AluY SINE Alu 111 301 -10 513 19 0 252 chrX 136148954 136149007 -40825133 - MADE1 DNA Mariner -14 66 1 236 250 40 40 chrX 136149234 136149358 -40824782 + L1ME LINE L1 5765 5888 -233 2407 89 3 0 chrX 136149403 136149705 -40824435 - AluSq SINE Alu -4 309 7 870 289 93 19 chrX 136150041 136150363 -40823777 - L3 LINE CR1 -166 1411 1066 21 82 0 0 chrX 136150506 136150555 -40823585 + AT_rich Low_complexity Low_complexity 1 49 0 1736 115 101 14 chrX 136151299 136151586 -40822554 - AluSq SINE Alu -1 312 1 2359 234 23 16 chrX 136151595 136152197 -40821943 - L1ME1 LINE L1 -1 6183 5526 2530 83 0 0 chrX 136152367 136152679 -40821461 - AluSx SINE Alu 0 312 1 763 208 35 35 chrX 136203818 136204049 -40770091 - MLT1H LTR MaLR -317 232 2 313 264 0 0 chrX 136204772 136204844 -40769296 - MER103 DNA DNA -47 119 48 2305 147 65 22 chrX 136204850 136205059 -40769081 - MSTB1 LTR MaLR 0 432 234 399 41 0 0 chrX 136205059 136205108 -40769032 + (GA)n Simple_repeat Simple_repeat 1 49 0 2305 147 65 22 chrX 136205108 136205312 -40768828 - MSTB1 LTR MaLR -198 234 1 254 239 15 15 chrX 136205579 136205646 -40768494 - MIR3 SINE MIR -49 159 93 869 136 6 13 chrX 136205896 136206042 -40768098 + MLT1B LTR MaLR 263 390 0 391 283 68 81 chrX 136206187 136206384 -40767756 + ERVL LTR ERVL 1743 1934 -3720 2125 114 3 23 chrX 136206384 136206690 -40767450 + AluSx SINE Alu 1 300 -12 391 283 68 81 chrX 136206690 136206877 -40767263 + ERVL LTR ERVL 1934 2122 -3532 414 306 32 21 chrX 136207201 136207387 -40766753 + ERVL LTR ERVL 2168 2355 -3299 432 306 20 14 chrX 136207393 136207540 -40766600 + ERVL LTR ERVL 3064 3211 -2443 293 321 75 0 chrX 136207958 136208092 -40766048 + ERVL LTR ERVL 5119 5262 -502 2578 29 3 23 chrX 136209772 136210080 -40764060 + AluY SINE Alu 1 302 -9 2060 145 0 3 chrX 136210126 136210437 -40763703 + AluJb SINE Alu 1 310 -2 2257 86 0 80 chrX 136210671 136211008 -40763132 - AluSg SINE Alu 0 310 1 445 190 51 51 chrX 136211122 136211208 -40762932 + MIR SINE MIR 107 195 -67 2415 70 28 0 chrX 136211208 136211495 -40762645 + AluSx SINE Alu 1 295 -17 445 190 51 51 chrX 136211495 136211545 -40762595 + MIR SINE MIR 194 243 -19 413 167 71 131 chrX 136211552 136211804 -40762336 - L1MC4a LINE L1 -173 5948 5712 1995 154 0 0 chrX 136211928 136212227 -40761913 - AluJb SINE Alu -13 299 1 2161 99 0 7 chrX 136212362 136212685 -40761455 - AluSx SINE Alu 0 312 1 438 270 59 36 chrX 136212934 136213156 -40760984 - HAL1 LINE L1 -13 2494 2268 257 299 117 61 chrX 136213696 136213960 -40760180 - HAL1 LINE L1 -1484 1023 745 400 256 6 62 chrX 136215065 136215225 -40758915 - L1MC4a LINE L1 -1978 5830 5680 247 222 144 11 chrX 136215399 136215489 -40758651 - L1MC4a LINE L1 -637 5484 5383 2231 99 23 0 chrX 136215724 136216026 -40758114 + AluSx SINE Alu 3 311 -1 985 241 117 16 chrX 136216107 136216493 -40757647 - L1ME LINE L1 -304 5817 5393 808 173 0 8 chrX 136216646 136216779 -40757361 + FLAM_A SINE Alu 2 133 0 1806 163 7 10 chrX 136216850 136217145 -40756995 + AluJb SINE Alu 1 294 -18 25 65 0 0 chrX 136217221 136217267 -40756873 + AT_rich Low_complexity Low_complexity 1 46 0 2279 95 0 0 chrX 136217274 136217578 -40756562 - AluSx SINE Alu 0 304 1 2634 43 0 3 chrX 136217860 136218162 -40755978 + AluY SINE Alu 1 301 -10 1545 187 0 22 chrX 136218450 136218572 -40755568 + AluJo SINE Alu 1 124 -188 1057 92 18 0 chrX 136218572 136218735 -40755405 + (GAAA)n Simple_repeat Simple_repeat 3 168 0 1545 187 0 22 chrX 136218735 136218890 -40755250 + AluJo SINE Alu 124 272 -40 243 0 0 0 chrX 136218892 136218919 -40755221 + (TC)n Simple_repeat Simple_repeat 2 28 0 261 213 113 0 chrX 136218927 136219007 -40755133 + L1MC4 LINE L1 6614 6702 -1340 905 269 154 18 chrX 136219427 136219824 -40754316 + MLT1H LTR MaLR 97 547 -2 1498 281 60 13 chrX 136220002 136220469 -40753671 + ERVL LTR ERVL 1800 2288 -3476 1054 229 21 0 chrX 136220502 136220738 -40753402 - MIR SINE MIR -21 241 1 431 294 20 13 chrX 136220739 136220892 -40753248 + ERVL LTR ERVL 2292 2445 -3319 * 631 243 14 7 chrX 136220887 136221035 -40753105 + ERVL LTR ERVL 3451 3599 -2055 2571 126 2 20 chrX 136221036 136221302 -40752838 + MLT1B LTR MaLR 1 259 -131 1665 193 16 53 chrX 136221302 136221681 -40752459 - MLT1A1 LTR MaLR 0 365 1 2571 126 2 20 chrX 136221681 136221811 -40752329 + MLT1B LTR MaLR 259 390 0 1623 257 102 48 chrX 136221836 136222485 -40751655 + ERVL LTR ERVL 3661 4344 -1420 540 67 13 0 chrX 136222505 136222580 -40751560 + MER41B LTR ERV1 479 554 -81 331 309 111 17 chrX 136222680 136222861 -40751279 + ERVL LTR ERVL 4374 4571 -914 767 276 50 19 chrX 136222891 136223152 -40750988 + ERVL LTR ERVL 4848 5116 -648 548 245 29 39 chrX 136223210 136223414 -40750726 + ERVL LTR ERVL 5204 5405 -359 345 82 0 0 chrX 136223414 136223463 -40750677 + (TG)n Simple_repeat Simple_repeat 2 50 0 5111 144 13 3 chrX 136223930 136225427 -40748713 + L1PB2 LINE L1 4464 5973 -178 2381 64 0 0 chrX 136225428 136225725 -40748415 + AluSx SINE Alu 1 297 -15 4340 179 46 11 chrX 136225727 136226714 -40747426 + L1 LINE L1 2764 3784 -2362 1683 199 24 34 chrX 136226906 136227374 -40746766 + L1ME1 LINE L1 4744 5206 -940 1464 227 29 71 chrX 136227394 136227875 -40746265 - LTR40c LTR ERVL -4 461 1 5041 188 72 21 chrX 136227877 136228452 -40745688 - HERVL40 LTR ERVL -4 5526 4877 2206 99 0 10 chrX 136228452 136228766 -40745374 + AluY SINE Alu 1 311 0 5041 188 72 21 chrX 136228766 136229196 -40744944 - HERVL40 LTR ERVL -653 4877 4470 4330 183 78 37 chrX 136229164 136230112 -40744028 - HERVL40 LTR ERVL -1405 4125 3139 * 966 164 0 47 chrX 136230107 136230278 -40743862 - HERVL40 LTR ERVL -3318 2212 2050 * 615 247 78 30 chrX 136230277 136230508 -40743632 - HERVL40 LTR ERVL -3913 1617 1376 * 1327 174 195 73 chrX 136230775 136230938 -40743202 - HERVL40 LTR ERVL -4136 1394 1252 2256 103 7 0 chrX 136230938 136231248 -40742892 + AluSx SINE Alu 1 312 0 1327 174 195 73 chrX 136231248 136231509 -40742631 - HERVL40 LTR ERVL -4278 1252 918 2143 125 42 31 chrX 136231639 136231999 -40742141 + THE1B LTR MaLR 1 364 0 2199 142 61 52 chrX 136232004 136232067 -40742073 - MSTA LTR MaLR 0 428 367 2064 122 0 7 chrX 136232067 136232362 -40741778 - AluSx SINE Alu -19 293 1 2199 142 61 52 chrX 136232362 136232722 -40741418 - MSTA LTR MaLR -61 367 1 464 274 30 15 chrX 136232761 136232896 -40741244 - HERVL40 LTR ERVL -5393 137 1 1698 226 62 18 chrX 136232916 136233355 -40740785 - LTR40c LTR ERVL -7 458 1 3440 208 19 47 chrX 136233358 136234085 -40740055 + L1ME1 LINE L1 5209 5908 -258 1777 120 3 108 chrX 136234085 136234248 -40739892 - AluSx SINE Alu -19 283 167 2041 119 0 3 chrX 136234248 136234541 -40739599 - AluSq SINE Alu -21 292 1 1777 120 3 108 chrX 136234541 136234693 -40739447 - AluSx SINE Alu -135 167 1 3440 208 19 47 chrX 136234693 136234846 -40739294 + L1ME1 LINE L1 5908 6064 -102 394 284 43 62 chrX 136234884 136235046 -40739094 + LTR67 LTR ERVL 104 262 -295 255 314 48 32 chrX 136235159 136235283 -40738857 + LTR67 LTR ERVL 424 549 -8 1045 180 29 34 chrX 136235531 136235770 -40738370 + MLT1H LTR MaLR 3 240 -309 378 0 0 0 chrX 136237041 136237083 -40737057 + (TG)n Simple_repeat Simple_repeat 1 42 0 273 57 0 0 chrX 136237085 136237120 -40737020 + (GA)n Simple_repeat Simple_repeat 2 36 0 457 301 30 40 chrX 136237440 136237639 -40736501 + L2 LINE L2 3105 3301 -12 469 282 42 63 chrX 136237695 136237982 -40736158 + L1ME LINE L1 5456 5736 -385 2184 110 0 0 chrX 136237993 136238303 -40735837 + AluSg SINE Alu 1 310 0 2316 68 0 26 chrX 136238306 136238658 -40735482 + AluY SINE Alu 1 344 0 1190 95 0 12 chrX 136238989 136239158 -40734982 - AluSc SINE Alu -10 299 133 2254 84 3 0 chrX 136239161 136239459 -40734681 - AluSp SINE Alu -14 299 1 2021 118 0 0 chrX 136239490 136239786 -40734354 + AluSx SINE Alu 1 296 -16 386 303 74 33 chrX 136240029 136240273 -40733867 + HERV16 LTR ERVL 929 1182 -3814 3084 98 9 7 chrX 136240276 136240703 -40733437 + MSTA LTR MaLR 1 428 0 323 371 38 11 chrX 136240776 136241010 -40733130 + HERV16 LTR ERVL 1305 1467 -3529 747 125 9 0 chrX 136241016 136241128 -40733012 + MLT1B LTR MaLR 5 117 -273 2103 112 0 3 chrX 136241397 136241692 -40732448 - AluSg SINE Alu -16 294 1 209 274 107 0 chrX 136241790 136241874 -40732266 + MIR SINE MIR 168 260 -2 199 256 184 48 chrX 136242000 136242125 -40732015 - L2 LINE L2 -13 3300 3159 387 0 0 0 chrX 136242466 136242509 -40731631 + (TG)n Simple_repeat Simple_repeat 1 43 0 1836 141 16 3 chrX 136242625 136242929 -40731211 + AluSg SINE Alu 1 308 -2 187 56 83 0 chrX 136242929 136242965 -40731175 + GA-rich Low_complexity Low_complexity 1 39 0 291 164 0 0 chrX 136243600 136243661 -40730479 + GA-rich Low_complexity Low_complexity 3 63 0 2102 99 3 3 chrX 136243722 136244014 -40730126 - AluSx SINE Alu -1 311 20 7353 50 9 7 chrX 136244211 136245667 -40728473 - SVA Other Other -876 1380 1 2118 119 0 22 chrX 136246694 136247012 -40727128 + AluSx SINE Alu 1 311 -1 2678 172 94 42 chrX 136247218 136247589 -40726551 + L1MD2 LINE L1 5682 6032 -327 1715 124 87 0 chrX 136247589 136247855 -40726285 + AluJb SINE Alu 13 301 -11 2678 172 94 42 chrX 136247855 136247952 -40726188 + L1MD2 LINE L1 6032 6122 -237 324 0 0 0 chrX 136247952 136247988 -40726152 + (CA)n Simple_repeat Simple_repeat 2 37 0 2678 172 94 42 chrX 136247988 136248147 -40725993 + L1MD2 LINE L1 6122 6344 -15 409 149 0 0 chrX 136248150 136248217 -40725923 - AluJ/FRAM SINE Alu -14 298 232 22 35 0 0 chrX 136248217 136248246 -40725894 + AT_rich Low_complexity Low_complexity 1 29 0 1971 135 20 0 chrX 136248257 136248561 -40725579 + AluSx SINE Alu 3 312 0 790 163 0 0 chrX 136248566 136248689 -40725451 - FLAM_C SINE Alu -19 124 2 1978 91 0 85 chrX 136248919 136249238 -40724902 + AluSq SINE Alu 1 292 -21 2034 96 45 3 chrX 136249408 136249699 -40724441 + AluSx SINE Alu 1 303 -9 2132 104 7 0 chrX 136250662 136250961 -40723179 + AluSg SINE Alu 1 301 -9 204 40 0 0 chrX 136250961 136250986 -40723154 + (GGAGAA)n Simple_repeat Simple_repeat 1 25 0 279 0 0 0 chrX 136251414 136251445 -40722695 + (CA)n Simple_repeat Simple_repeat 2 32 0 3323 87 11 0 chrX 136251449 136251886 -40722254 - L1PA10 LINE L1 -16 6152 5711 1839 149 0 0 chrX 136252676 136252957 -40721183 - AluSx SINE Alu -31 281 1 3430 61 0 0 chrX 136253183 136253607 -40720533 - L1PA7 LINE L1 0 6154 5731 6679 116 13 20 chrX 136253610 136254204 -40719936 - L1P3 LINE L1 -5473 988 402 2385 76 0 0 chrX 136254204 136254507 -40719633 + AluY SINE Alu 1 303 -8 6679 116 13 20 chrX 136254507 136254903 -40719237 - L1P3 LINE L1 -6059 402 5 1191 200 94 108 chrX 136254907 136255267 -40718873 - MLT2B1 LTR ERVL -61 459 96 1460 184 0 41 chrX 136255267 136255561 -40718579 + AluJo SINE Alu 1 282 -30 306 0 0 0 chrX 136255570 136255604 -40718536 + (CA)n Simple_repeat Simple_repeat 2 35 0 1191 200 94 108 chrX 136255604 136255689 -40718451 - MLT2B1 LTR ERVL -432 88 10 883 201 92 70 chrX 136255805 136256089 -40718051 - MLT1D LTR MaLR -126 379 90 1467 228 31 23 chrX 136256101 136256452 -40717688 - MER4D LTR ERV1 -1 902 549 1548 164 29 11 chrX 136256487 136256762 -40717378 - MER49 LTR ERV1 -643 280 1 393 208 65 0 chrX 136256767 136256844 -40717296 - MLT1D LTR MaLR -423 82 1 2084 120 7 3 chrX 136257058 136257366 -40716774 + AluSx SINE Alu 1 309 -3 727 189 77 177 chrX 136257504 136257564 -40716576 + L2 LINE L2 2926 2990 -323 2432 68 3 0 chrX 136257564 136257874 -40716266 - AluY SINE Alu 0 311 1 727 189 77 177 chrX 136257874 136257916 -40716224 + L2 LINE L2 2990 3035 -278 2368 96 50 25 chrX 136257916 136258279 -40715861 + THE1C LTR MaLR 1 372 -3 1693 146 11 0 chrX 136258279 136258547 -40715593 - AluJb SINE Alu -33 279 9 727 189 77 177 chrX 136258547 136258642 -40715498 + L2 LINE L2 3034 3137 -176 2705 83 128 5 chrX 136258642 136259041 -40715099 - LTR7 LTR ERV1 -2 448 1 727 189 77 177 chrX 136259041 136259258 -40714882 + L2 LINE L2 3137 3301 -12 2864 108 5 19 chrX 136259260 136259677 -40714463 - MER4E LTR ERV1 0 779 369 1622 108 4 4 chrX 136259678 136259909 -40714231 - AluSx SINE Alu -12 298 68 1284 189 95 55 chrX 136259909 136260342 -40713798 - LTR7 LTR ERV1 0 450 1 570 82 0 0 chrX 136260342 136260415 -40713725 - AluSx SINE Alu -238 74 2 771 122 193 91 chrX 136260417 136260614 -40713526 - MER4B LTR ERV1 -393 217 1 631 289 117 19 chrX 136260617 136260873 -40713267 + L2 LINE L2 2542 2822 -492 346 282 12 0 chrX 136260873 136260958 -40713182 - L2 LINE L2 -1 3312 3227 369 276 309 14 chrX 136261496 136261572 -40712568 + HAL1 LINE L1 812 864 -1643 2192 123 0 0 chrX 136261572 136261880 -40712260 + AluSx SINE Alu 1 308 -4 369 276 309 14 chrX 136261880 136262013 -40712127 + HAL1 LINE L1 864 1083 -1424 2351 57 0 13 chrX 136262121 136262419 -40711721 - AluY SINE Alu -17 294 1 188 212 202 30 chrX 136262735 136262834 -40711306 - MIR3 SINE MIR -11 197 82 1614 135 19 109 chrX 136263015 136263215 -40710925 - AluJb SINE Alu 0 303 141 2049 101 0 25 chrX 136263215 136263533 -40710607 - AluSg SINE Alu 0 310 1 1614 135 19 109 chrX 136263533 136263663 -40710477 - AluJb SINE Alu -162 141 1 2315 95 0 0 chrX 136263873 136264179 -40709961 + AluSx SINE Alu 1 306 -6 252 232 50 40 chrX 136264371 136264470 -40709670 + MIR SINE MIR 137 236 -26 2302 79 0 19 chrX 136264588 136264903 -40709237 + AluSg SINE Alu 1 309 -1 2081 121 0 7 chrX 136264913 136265218 -40708922 + AluSx SINE Alu 1 303 -9 1760 138 7 7 chrX 136265236 136265518 -40708622 + AluSx SINE Alu 6 287 -25 1851 152 55 12 chrX 136265772 136266101 -40708039 - MER2 DNA MER2_type 0 344 2 233 219 0 0 chrX 136266188 136266229 -40707911 - L3b LINE CR1 -1 1582 1542 235 380 70 19 chrX 136266251 136266409 -40707731 + MIR SINE MIR 40 205 -57 1856 170 118 39 chrX 136266418 136266617 -40707523 - LTR54B LTR ERV1 -2 496 314 1867 166 0 3 chrX 136266617 136266925 -40707215 - AluJo SINE Alu -4 308 2 1856 170 118 39 chrX 136266925 136267183 -40706957 - LTR54B LTR ERV1 -184 314 3 337 275 0 22 chrX 136267218 136267309 -40706831 - MIR SINE MIR -67 195 107 1242 116 0 0 chrX 136267339 136267520 -40706620 + AluSg/x SINE Alu 130 310 0 1922 122 49 0 chrX 136267545 136267832 -40706308 + AluSx SINE Alu 1 301 -11 337 225 14 0 chrX 136267895 136267966 -40706174 + MIR3 SINE MIR 85 156 -52 24 32 0 0 chrX 136268391 136268422 -40705718 + AT_rich Low_complexity Low_complexity 1 31 0 554 181 0 9 chrX 136268422 136268538 -40705602 + GA-rich Low_complexity Low_complexity 2 116 0 345 248 48 67 chrX 136268633 136268738 -40705402 - L2 LINE L2 -1 3312 3210 226 125 0 0 chrX 136268782 136268822 -40705318 - L1ME LINE L1 -237 5884 5845 1828 113 69 0 chrX 136269025 136269300 -40704840 + AluSq SINE Alu 1 294 -19 540 211 7 68 chrX 136269306 136269453 -40704687 - MIR SINE MIR -14 248 111 730 162 84 45 chrX 136270555 136270709 -40703431 + MIR SINE MIR 1 160 -102 805 113 0 2 chrX 136271427 136271684 -40702456 + AluSx SINE Alu 1 308 -4 1683 109 105 0 chrX 136271873 136272169 -40701971 + AluJb SINE Alu 7 330 0 325 316 47 18 chrX 136272509 136272680 -40701460 - L2 LINE L2 -339 2975 2800 1535 135 26 34 chrX 136272681 136272947 -40701193 + MER21A LTR ERV1 1 264 -667 2846 161 87 15 chrX 136272951 136273471 -40700669 + MER21A LTR ERV1 375 931 0 297 279 0 0 chrX 136273482 136273550 -40700590 - L2 LINE L2 0 3313 3246 2515 107 11 21 chrX 136273551 136273771 -40700369 - MLT1B LTR MaLR 0 390 174 2058 108 52 0 chrX 136273771 136274057 -40700083 - AluSx SINE Alu -11 301 1 2515 107 11 21 chrX 136274057 136274210 -40699930 - MLT1B LTR MaLR -216 174 21 315 229 53 106 chrX 136274247 136274377 -40699763 - L2 LINE L2 -61 3252 3133 809 123 46 23 chrX 136274377 136274507 -40699633 + FLAM_C SINE Alu 1 133 0 315 229 53 106 chrX 136274507 136274564 -40699576 - L2 LINE L2 -180 3133 3075 1035 306 76 16 chrX 136274629 136275129 -40699011 - L2 LINE L2 -527 2787 2258 2946 126 96 2 chrX 136275203 136275671 -40698469 + MER41E LTR ERV1 1 512 0 272 301 30 38 chrX 136275750 136275883 -40698257 + L2 LINE L2 1240 1371 -1943 207 156 0 0 chrX 136275890 136275922 -40698218 + (CCA)n Simple_repeat Simple_repeat 1 32 0 713 310 64 12 chrX 136275924 136276006 -40698134 + L2 LINE L2 1554 1630 -1684 498 66 0 121 chrX 136276006 136276045 -40698095 + MADE1 DNA Mariner 1 24 -56 2295 91 3 3 chrX 136276045 136276342 -40697798 - AluSg SINE Alu -13 297 1 498 66 0 121 chrX 136276342 136276393 -40697747 + MADE1 DNA Mariner 24 80 0 713 310 64 12 chrX 136276393 136276717 -40697423 + L2 LINE L2 1630 1981 -1333 2492 188 57 15 chrX 136276735 136277261 -40696879 - Charlie1a DNA MER1_type -860 595 48 996 305 77 34 chrX 136277491 136277527 -40696613 - L2 LINE L2 -2432 882 849 1353 106 111 0 chrX 136277527 136277734 -40696406 + MER30 DNA MER1_type 1 230 0 996 305 77 34 chrX 136277734 136277834 -40696306 - L2 LINE L2 -2465 849 755 2396 91 0 0 chrX 136277834 136278131 -40696009 + AluY SINE Alu 1 297 -14 996 305 77 34 chrX 136278131 136278550 -40695590 - L2 LINE L2 -2559 755 302 3102 132 323 2 chrX 136278682 136279882 -40694258 - pTR5 LTR ERV1 0 2606 1524 2266 189 13 29 chrX 136280019 136280469 -40693671 + LOR1b LTR ERV1 1 443 -18 2145 91 0 4 chrX 136280469 136280744 -40693396 - AluY SINE Alu -37 274 1 1508 117 12 150 chrX 136280939 136281070 -40693070 + AluJo SINE Alu 10 69 -243 2216 114 13 0 chrX 136281070 136281376 -40692764 + AluSg SINE Alu 1 310 0 1508 117 12 150 chrX 136281376 136281577 -40692563 + AluJo SINE Alu 69 296 -16 439 203 70 42 chrX 136281876 136282019 -40692121 - MIR SINE MIR -108 154 8 2166 101 3 7 chrX 136282285 136282593 -40691547 + AluSq SINE Alu 1 307 0 2409 76 0 0 chrX 136283291 136283579 -40690561 - AluSg SINE Alu -14 296 9 807 111 16 8 chrX 136283600 136283726 -40690414 - L1MC1 LINE L1 0 6333 6207 1385 134 5 5 chrX 136283928 136284137 -40690003 - AluSg/x SINE Alu -17 295 87 474 152 0 98 chrX 136285408 136285520 -40688620 - AluSg/x SINE Alu -8 304 204 2324 84 0 0 chrX 136285776 136286063 -40688077 - AluSx SINE Alu -25 287 1 193 344 84 8 chrX 136286515 136286646 -40687494 - L2 LINE L2 -212 3060 2920 769 122 0 0 chrX 136286958 136287065 -40687075 + U6 snRNA snRNA 1 107 0 2782 145 33 35 chrX 136287091 136287462 -40686678 + L1 LINE L1 4687 5058 -1088 2394 94 0 16 chrX 136287462 136287769 -40686371 + AluSx SINE Alu 1 302 -10 2782 145 33 35 chrX 136287769 136287941 -40686199 + L1 LINE L1 5058 5229 -917 1050 130 11 5 chrX 136287935 136288120 -40686020 - L1MA4 LINE L1 -257 6043 5858 * 1533 150 17 0 chrX 136288120 136288353 -40685787 + AluSx SINE Alu 1 237 -75 969 202 35 0 chrX 136288354 136288557 -40685583 - L1 LINE L1 -916 5230 5021 * 1191 142 0 71 chrX 136288555 136288684 -40685456 + L1MA4 LINE L1 6054 6160 -140 2297 65 20 7 chrX 136288684 136288978 -40685162 - AluY SINE Alu -13 298 1 1191 142 0 71 chrX 136288978 136289087 -40685053 + L1MA4 LINE L1 6160 6275 -25 1994 139 10 13 chrX 136289092 136289401 -40684739 - AluSx SINE Alu -4 308 1 643 121 0 0 chrX 136289401 136289492 -40684648 - AluSq/x SINE Alu -178 135 45 366 321 32 62 chrX 136289533 136289841 -40684299 - L2 LINE L2 -566 2748 2450 226 266 16 0 chrX 136289989 136290053 -40684087 + C-rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chrX 136290411 136290435 -40683705 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 136291655 136291677 -40682463 + AT_rich Low_complexity Low_complexity 1 22 0 2045 125 3 3 chrX 136291995 136292283 -40681857 - AluSx SINE Alu -24 288 1 922 86 39 8 chrX 136292290 136292418 -40681722 - AluSq/x SINE Alu -180 132 1 2422 64 14 7 chrX 136292422 136292717 -40681423 - AluY SINE Alu -14 297 1 1000 188 0 6 chrX 136292731 136292896 -40681244 + AluJb SINE Alu 133 296 -16 978 94 31 0 chrX 136292900 136293027 -40681113 + AluSq/x SINE Alu 5 135 -178 2083 112 10 0 chrX 136293027 136293322 -40680818 + AluSp SINE Alu 1 298 -15 737 168 0 24 chrX 136294222 136294347 -40679793 + FLAM_C SINE Alu 12 133 -10 809 150 15 0 chrX 136294375 136294508 -40679632 - MER5A DNA MER1_type 0 189 55 360 284 94 16 chrX 136294824 136294951 -40679189 + L2 LINE L2 3132 3268 -4 2359 91 0 3 chrX 136294957 136295253 -40678887 - AluSx SINE Alu -17 295 1 2470 36 17 13 chrX 136296088 136296389 -40677751 - AluY SINE Alu -9 302 1 186 133 0 0 chrX 136296908 136296938 -40677202 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 1745 147 0 15 chrX 136297302 136297568 -40676572 + AluJo SINE Alu 1 262 -50 1751 97 0 9 chrX 136297568 136297792 -40676348 - AluSx SINE Alu -88 224 1 2282 113 3 0 chrX 136298127 136298428 -40675712 - AluSx SINE Alu -10 302 1 333 277 71 9 chrX 136298470 136298582 -40675558 + MIR SINE MIR 35 153 -55 2279 84 7 26 chrX 136298891 136299200 -40674940 + AluSg SINE Alu 1 303 -7 23 54 0 0 chrX 136299796 136299833 -40674307 + AT_rich Low_complexity Low_complexity 1 37 0 922 232 77 146 chrX 136299968 136299987 -40674153 - L1MC4a LINE L1 -1856 5952 5933 2336 65 13 32 chrX 136299987 136300297 -40673843 - AluY SINE Alu -7 304 1 922 232 77 146 chrX 136300297 136300497 -40673643 - L1MC4a LINE L1 -1875 5933 5721 2319 97 0 0 chrX 136300497 136300795 -40673345 - AluSx SINE Alu -14 298 1 922 232 77 146 chrX 136300795 136301226 -40672914 - L1MC4a LINE L1 -2087 5721 5346 2214 117 7 0 chrX 136301309 136301616 -40672524 - AluSg SINE Alu -1 309 1 2397 106 0 0 chrX 136301633 136301945 -40672195 - AluSx SINE Alu 0 312 1 30 27 0 0 chrX 136302062 136302099 -40672041 + AT_rich Low_complexity Low_complexity 1 37 0 1859 187 0 3 chrX 136302559 136302864 -40671276 - AluJb SINE Alu -8 304 1 2078 65 65 11 chrX 136302939 136303252 -40670888 - AluSq SINE Alu 0 313 1 21 0 0 0 chrX 136303291 136303312 -40670828 + AT_rich Low_complexity Low_complexity 1 21 0 226 319 80 98 chrX 136303602 136303714 -40670426 + L2 LINE L2 2917 3029 -243 2287 95 3 3 chrX 136303714 136304008 -40670132 - AluSx SINE Alu -18 294 1 226 319 80 98 chrX 136304008 136304233 -40669907 + L2 LINE L2 3029 3248 -24 762 136 0 0 chrX 136304520 136304638 -40669502 + FLAM_A SINE Alu 13 130 -12 1808 127 6 92 chrX 136305412 136305728 -40668412 - AluSx SINE Alu -23 289 1 2339 84 0 32 chrX 136307196 136307505 -40666635 + AluSq SINE Alu 1 299 -14 1459 136 133 14 chrX 136307799 136308078 -40666062 - AluJo SINE Alu 0 312 1 637 51 0 0 chrX 136309537 136309616 -40664524 + MADE1 DNA Mariner 1 79 -1 25 0 0 0 chrX 136309955 136309980 -40664160 + AT_rich Low_complexity Low_complexity 1 25 0 1660 134 119 0 chrX 136310032 136310300 -40663840 - AluJo SINE Alu -12 300 1 316 261 68 0 chrX 136310461 136310549 -40663591 + L2 LINE L2 3200 3293 -20 180 0 0 0 chrX 136310614 136310634 -40663506 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 517 268 81 45 chrX 136311491 136311872 -40662268 + L1ME4a LINE L1 5708 6102 -19 2242 112 10 7 chrX 136312455 136312760 -40661380 - AluSg SINE Alu -4 306 1 1476 158 38 10 chrX 136312781 136313073 -40661067 - L1MB1 LINE L1 -1 6167 5868 353 179 0 15 chrX 136313264 136313331 -40660809 + Charlie7 DNA MER1_type 36 101 -2511 349 281 82 18 chrX 136313317 136313488 -40660652 + Charlie7 DNA MER1_type 2429 2610 -2 * 2291 104 3 0 chrX 136314541 136314848 -40659292 - AluSp SINE Alu -5 308 1 2246 102 0 13 chrX 136315281 136315586 -40658554 - AluSx SINE Alu -11 301 1 32 0 0 0 chrX 136316340 136316372 -40657768 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 136317149 136317177 -40656963 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chrX 136318043 136318069 -40656071 + (TG)n Simple_repeat Simple_repeat 2 27 0 494 92 0 0 chrX 136318069 136318134 -40656006 - AluY SINE Alu -18 283 219 750 119 0 0 chrX 136318134 136318235 -40655905 - AluSg/x SINE Alu -125 187 87 1877 124 68 24 chrX 136318289 136318627 -40655513 - MER46B DNA MER2_type -8 228 1 1912 148 13 20 chrX 136320298 136320669 -40653471 - AluJb SINE Alu 0 369 1 2108 110 6 12 chrX 136320808 136321127 -40653013 - L1MC1 LINE L1 0 6333 6017 323 212 10 61 chrX 136321162 136321261 -40652879 - L1MC5 LINE L1 -48 7913 7820 2357 88 0 0 chrX 136321283 136321578 -40652562 - AluSx SINE Alu -7 305 11 337 263 164 13 chrX 136321773 136321925 -40652215 + MER5A DNA MER1_type 15 189 0 306 300 164 14 chrX 136321967 136322107 -40652033 - MIR SINE MIR -81 181 21 2541 75 7 0 chrX 136322144 136322452 -40651688 - AluSq SINE Alu -3 310 1 2328 104 0 0 chrX 136322482 136322791 -40651349 + AluSp SINE Alu 1 309 -4 416 249 109 55 chrX 136324175 136324340 -40649800 - MIR3 SINE MIR -19 189 16 1989 89 53 7 chrX 136324822 136325104 -40649036 - AluSq SINE Alu -6 307 13 2264 155 136 7 chrX 136325380 136325800 -40648340 - MER101 LTR ERV1 0 474 1 288 286 76 19 chrX 136326314 136326419 -40647721 + L3 LINE CR1 1460 1570 -7 1042 223 77 45 chrX 136326460 136326796 -40647344 + L1MD2 LINE L1 5932 6278 -81 2095 133 3 0 chrX 136326842 136327135 -40647005 - AluSq SINE Alu -17 296 3 571 223 62 8 chrX 136328005 136328135 -40646005 + MIR SINE MIR 46 182 -80 197 206 0 0 chrX 136328134 136328168 -40645972 + L2 LINE L2 3223 3256 -16 * 2416 82 0 7 chrX 136328432 136328737 -40645403 - AluSx SINE Alu -9 303 1 226 250 0 18 chrX 136329121 136329177 -40644963 - L2 LINE L2 0 3272 3218 412 279 34 27 chrX 136329220 136329367 -40644773 + MIR SINE MIR 78 225 -37 1877 184 57 82 chrX 136329621 136330098 -40644042 + MLT1C LTR MaLR 3 467 0 1892 122 61 0 chrX 136330266 136330545 -40643595 - AluSx SINE Alu -16 296 1 1156 119 243 0 chrX 136330807 136330992 -40643148 - MER30 DNA MER1_type 0 230 1 2645 55 63 33 chrX 136330992 136331356 -40642784 + THE1C LTR MaLR 1 375 0 3386 196 78 35 chrX 136331517 136332367 -40641773 + L1MC4 LINE L1 7157 8042 0 325 315 78 73 chrX 136332367 136332599 -40641541 - L2 LINE L2 -10 3262 3030 400 164 27 0 chrX 136333346 136333419 -40640721 + MER116 DNA Mariner 1 75 -5 315 253 0 0 chrX 136333424 136333507 -40640633 - L1MC5 LINE L1 -86 7875 7793 965 190 6 6 chrX 136333806 136333969 -40640171 - FRAM SINE Alu -3 163 1 1589 219 31 20 chrX 136334019 136334375 -40639765 - L1MC4a LINE L1 -1888 5920 5561 2398 69 3 0 chrX 136335292 136335581 -40638559 - AluSp SINE Alu -23 290 1 320 210 150 10 chrX 136335659 136335759 -40638381 - L1ME4a LINE L1 -40 6081 5968 414 57 0 0 chrX 136335759 136335812 -40638328 + (TA)n Simple_repeat Simple_repeat 2 54 0 507 246 42 30 chrX 136335851 136336018 -40638122 + MIR SINE MIR 92 260 -2 620 221 29 0 chrX 136336104 136336240 -40637900 - L1ME4a LINE L1 -2103 5705 5566 235 314 132 13 chrX 136336374 136336533 -40637607 - L2 LINE L2 -350 2964 2787 542 299 87 12 chrX 136336538 136336779 -40637361 - L2 LINE L2 0 3313 3055 326 252 48 0 chrX 136336875 136336978 -40637162 + MER113 DNA MER1_type? 84 191 -330 1361 152 13 42 chrX 136337004 136337241 -40636899 + AluJo SINE Alu 42 271 -41 2219 119 0 10 chrX 136337241 136337551 -40636589 + AluSx SINE Alu 1 307 -5 389 248 113 14 chrX 136337652 136337793 -40636347 - MIR SINE MIR -17 245 91 225 242 45 15 chrX 136337765 136337831 -40636309 + MIR SINE MIR 88 155 -107 * 1947 141 24 3 chrX 136338491 136338788 -40635352 + AluJb SINE Alu 1 303 -9 12157 248 38 46 chrX 136339068 136340847 -40633293 - MER66A-int LTR ERV1 -195 6481 4690 7234 94 16 13 chrX 136340847 136341798 -40632342 - LTR13 LTR ERVK 0 954 1 12157 248 38 46 chrX 136341798 136343208 -40630932 - MER66A-int LTR ERV1 -1986 4690 3270 230 250 36 0 chrX 136343208 136343264 -40630876 + MER74C LTR ERVL 17 74 -386 12157 248 38 46 chrX 136343264 136347411 -40626729 - MER66A-int LTR ERV1 -3406 3270 811 2386 121 118 18 chrX 136347411 136347800 -40626340 - MSTA LTR MaLR 0 428 1 12157 248 38 46 chrX 136347800 136348557 -40625583 - MER66A-int LTR ERV1 -5865 811 50 1403 223 112 2 chrX 136348628 136349024 -40625116 - MER66A LTR ERV1 -40 438 97 2335 137 21 21 chrX 136349036 136349373 -40624767 - MER1B DNA MER1_type 0 337 1 519 314 83 7 chrX 136349414 136349704 -40624436 - L1M4 LINE L1 -2281 3865 3554 24 0 0 0 chrX 136349707 136349731 -40624409 + AT_rich Low_complexity Low_complexity 1 24 0 2769 105 0 43 chrX 136349731 136350170 -40623970 - L1MA1 LINE L1 -104 6198 5779 2188 107 3 3 chrX 136350170 136350460 -40623680 - AluSx SINE Alu -22 290 1 767 288 57 41 chrX 136350537 136350926 -40623214 - L1M4 LINE L1 -2160 3986 3592 322 196 0 0 chrX 136351345 136351401 -40622739 - MLT1A2 LTR MaLR 0 390 335 989 152 0 18 chrX 136351401 136351565 -40622575 + MER1B DNA MER1_type 1 161 -136 * 4305 120 69 36 chrX 136351563 136352313 -40621827 - LTR1 LTR ERV1 -10 775 1 1316 143 5 0 chrX 136352356 136352545 -40621595 + MER1B DNA MER1_type 149 338 -1 288 0 0 0 chrX 136352557 136352589 -40621551 + (TA)n Simple_repeat Simple_repeat 2 33 0 1200 227 50 17 chrX 136352592 136352892 -40621248 - MLT1A2 LTR MaLR -64 310 1 1040 282 54 10 chrX 136353197 136353491 -40620649 - MLT1I LTR MaLR -5 404 98 996 68 0 30 chrX 136353804 136353937 -40620203 - AluY SINE Alu -16 295 167 455 264 36 36 chrX 136354146 136354286 -40619854 + MLT2F LTR ERVL 179 318 -345 30 0 0 61 chrX 136354519 136354547 -40619593 + AT_rich Low_complexity Low_complexity 1 26 -20 2323 55 0 0 chrX 136354547 136354820 -40619320 - AluY SINE Alu -2 309 37 30 0 0 61 chrX 136354820 136354840 -40619300 + AT_rich Low_complexity Low_complexity 26 46 0 284 162 17 77 chrX 136357466 136357583 -40616557 + (TATAA)n Simple_repeat Simple_repeat 1 110 0 837 330 47 8 chrX 136357956 136358320 -40615820 - HERV16 LTR ERVL -4617 379 2 473 259 75 47 chrX 136358358 136358501 -40615639 - LTR16A LTR ERVL -80 370 218 2125 134 10 0 chrX 136358501 136358807 -40615333 + AluJo SINE Alu 1 309 -3 473 259 75 47 chrX 136358807 136358875 -40615265 - LTR16A LTR ERVL -232 218 153 4130 18 0 0 chrX 136359197 136359641 -40614499 - L1PA3 LINE L1 -4 6151 5708 483 243 0 0 chrX 136359942 136360053 -40614087 - LTR33 LTR ERVL -1 520 410 409 300 89 43 chrX 136360068 136360325 -40613815 + MLT1I LTR MaLR 18 286 -123 818 211 34 41 chrX 136360490 136360846 -40613294 - LTR33 LTR ERVL -105 416 6 477 315 40 36 chrX 136360848 136360973 -40613167 + L1ME3 LINE L1 5358 5481 -683 2361 106 0 0 chrX 136360973 136361275 -40612865 + AluSx SINE Alu 1 302 -10 477 315 40 36 chrX 136361275 136361425 -40612715 + L1ME3 LINE L1 5481 5634 -530 238 351 40 0 chrX 136361470 136361544 -40612596 - MER91A DNA MER1_type -1 195 119 314 353 81 0 chrX 136361576 136361712 -40612428 - MER91A DNA MER1_type -28 168 22 296 151 38 0 chrX 136361723 136361776 -40612364 + L1M1 LINE L1 5704 5758 -546 3103 153 59 4 chrX 136361807 136362363 -40611777 + L1MB7 LINE L1 5598 6184 0 2425 214 35 77 chrX 136362363 136363187 -40610953 + L1ME LINE L1 4320 5109 -1037 1260 199 40 14 chrX 136363199 136363475 -40610665 + MER90 LTR ERV1 332 614 0 6392 188 17 2 chrX 136363486 136365510 -40608630 + L1PA15 LINE L1 4125 6162 -3 2017 134 71 58 chrX 136365579 136365959 -40608181 - MSTC LTR MaLR 0 428 44 837 146 82 47 chrX 136365959 136366130 -40608010 - THE1C LTR MaLR 0 375 199 407 231 19 6 chrX 136366147 136366303 -40607837 + CT-rich Low_complexity Low_complexity 4 161 0 22 0 0 0 chrX 136366317 136366339 -40607801 + AT_rich Low_complexity Low_complexity 1 22 0 1235 128 14 38 chrX 136366399 136366610 -40607530 - THE1C LTR MaLR -169 206 1 309 160 0 0 chrX 136366610 136366656 -40607484 - MSTC LTR MaLR -382 46 1 355 206 38 94 chrX 136366659 136366742 -40607398 + L1ME LINE L1 5342 5413 -946 1754 166 17 27 chrX 136366742 136367038 -40607102 - AluJb SINE Alu -19 293 1 355 206 38 94 chrX 136367038 136367114 -40607026 + L1ME LINE L1 5413 5492 -867 * 1113 246 117 0 chrX 136367087 136367404 -40606736 + L1ME3 LINE L1 5803 6156 -6 381 295 36 7 chrX 136367579 136367718 -40606422 + HsTC2 DNA Tc2 6 148 -1750 373 312 11 43 chrX 136367722 136367908 -40606232 + HsTC2 DNA Tc2 1273 1628 -270 234 316 102 0 chrX 136368352 136368450 -40605690 + L1ME LINE L1 5480 5587 -577 622 344 50 52 chrX 136368454 136368939 -40605201 - LTR16C LTR ERVL -4 487 4 604 169 62 8 chrX 136369071 136369201 -40604939 - L1M4 LINE L1 -2098 4048 3912 771 244 113 0 chrX 136369221 136369434 -40604706 - L1M4 LINE L1 -3375 2771 2535 258 225 150 17 chrX 136370867 136370987 -40603153 + L1ME LINE L1 5522 5657 -464 2236 121 0 3 chrX 136373320 136373625 -40600515 + AluSc SINE Alu 1 304 -5 291 244 48 70 chrX 136373799 136374029 -40600111 + LTR37B LTR ERV1 227 451 -17 334 83 17 100 chrX 136376084 136376144 -40597996 + L1MA2 LINE L1 6172 6226 -78 1458 114 26 4 chrX 136376144 136376370 -40597770 + L1MA2 LINE L1 6069 6301 -3 21 36 0 0 chrX 136376370 136376398 -40597742 + AT_rich Low_complexity Low_complexity 1 28 0 911 223 156 30 chrX 136376453 136376568 -40597572 - MLT1E LTR MaLR -290 303 204 5706 148 26 18 chrX 136376568 136377529 -40596611 - LTR5 LTR ERVK 0 969 1 911 223 156 30 chrX 136377529 136377682 -40596458 - MLT1E LTR MaLR -389 204 1 640 244 28 6 chrX 136377682 136377858 -40596282 - L1ME LINE L1 -377 5789 5610 * 2375 210 73 46 chrX 136377857 136377981 -40596159 + L1M4 LINE L1 3943 4062 -2084 1481 77 43 0 chrX 136377981 136378189 -40595951 + L1PA13 LINE L1 5944 6160 -3 2375 210 73 46 chrX 136378189 136378896 -40595244 + L1M4 LINE L1 4062 4797 -1349 1296 162 9 0 chrX 136378896 136379106 -40595034 + MER2 DNA MER2_type 1 212 -133 5264 88 4 1 chrX 136379130 136379854 -40594286 - L1PB2 LINE L1 -3 6148 5423 4078 9 0 0 chrX 136379864 136380315 -40593825 - L1HS LINE L1 0 6155 5705 699 13 0 0 chrX 136380314 136380391 -40593749 + L1P1 LINE L1 5641 5717 -438 * 4022 185 54 5 chrX 136380386 136381445 -40592695 - L1PB2 LINE L1 -713 5441 4333 759 190 14 0 chrX 136381434 136381576 -40592564 + L1P LINE L1 3712 3855 -2291 * 605 244 0 0 chrX 136381588 136381723 -40592417 + L1 LINE L1 4189 4323 -1823 469 184 13 0 chrX 136381733 136381809 -40592331 + MER2 DNA MER2_type 269 345 0 2245 216 25 12 chrX 136381809 136382403 -40591737 + L1ME LINE L1 4796 5397 -749 518 160 82 180 chrX 136382503 136382709 -40591431 + L1ME LINE L1 5408 5593 -573 * 636 294 96 22 chrX 136382686 136382958 -40591182 - L1ME3 LINE L1 -114 6048 5757 324 280 47 0 chrX 136382958 136383065 -40591075 + L1 LINE L1 3759 3870 -2276 1518 261 133 35 chrX 136383075 136383151 -40590989 + MLT1E2 LTR MaLR 1 68 -558 7344 45 30 0 chrX 136383151 136384022 -40590118 - MER11D LTR ERVK 0 897 1 1518 261 133 35 chrX 136384022 136384515 -40589625 + MLT1E2 LTR MaLR 68 626 0 242 193 0 18 chrX 136384517 136384574 -40589566 + L1 LINE L1 3880 3935 -2211 641 230 46 59 chrX 136384768 136385007 -40589133 + L1MC4a LINE L1 7280 7690 -305 393 268 49 29 chrX 136386915 136387120 -40587020 - LTR37B LTR ERV1 -4 464 256 1958 32 8 16 chrX 136387498 136387744 -40586396 - L1PA4 LINE L1 0 6155 5912 189 0 0 0 chrX 136388885 136388906 -40585234 + (A)n Simple_repeat Simple_repeat 1 21 0 232 202 71 21 chrX 136390538 136390649 -40583491 + MIR SINE MIR 101 218 -44 680 203 24 0 chrX 136391767 136391890 -40582250 - FLAM_C SINE Alu -17 126 1 215 211 0 0 chrX 136392906 136392944 -40581196 + (ATGGTG)n Simple_repeat Simple_repeat 1 38 0 794 174 62 36 chrX 136398152 136398347 -40575793 - MER67C LTR ERV1 -510 200 1 2437 77 0 3 chrX 136400694 136400994 -40573146 + AluSx SINE Alu 1 299 -13 1891 132 0 4 chrX 136401700 136401966 -40572174 - AluJo SINE Alu -39 273 9 23 0 0 0 chrX 136402410 136402433 -40571707 + AT_rich Low_complexity Low_complexity 1 23 0 380 243 0 29 chrX 136402582 136402685 -40571455 - MIR SINE MIR -147 115 16 282 274 157 13 chrX 136404055 136404208 -40569932 + L1M4 LINE L1 3743 3917 -2229 285 102 51 0 chrX 136404547 136404606 -40569534 + (CATA)n Simple_repeat Simple_repeat 3 64 0 2113 132 0 0 chrX 136404653 136404948 -40569192 - AluSx SINE Alu -17 295 1 908 247 65 7 chrX 136405005 136405280 -40568860 + L2 LINE L2 2364 2654 -660 738 242 0 0 chrX 136405296 136405461 -40568679 - L1ME LINE L1 -475 5695 5531 5282 83 139 143 chrX 136506218 136507394 -40466746 + pTR5 LTR ERV1 1268 2438 0 428 290 95 12 chrX 136507396 136507565 -40466575 - MIR SINE MIR -65 197 15 727 256 29 5 chrX 136508791 136508998 -40465142 + MIR SINE MIR 32 243 -19 1485 159 29 4 chrX 136509697 136509963 -40464177 - AluSx SINE Alu 0 303 32 223 185 0 19 chrX 136510659 136510713 -40463427 + (TG)n Simple_repeat Simple_repeat 1 53 0 22 56 0 0 chrX 136511098 136511134 -40463006 + AT_rich Low_complexity Low_complexity 1 36 0 1859 167 55 14 chrX 136512718 136513066 -40461074 + MLT1A1 LTR MaLR 1 362 -3 276 77 0 0 chrX 136513503 136513542 -40460598 + (GA)n Simple_repeat Simple_repeat 2 40 0 423 256 5 128 chrX 136513687 136513882 -40460258 - LTR33 LTR ERVL -341 180 10 268 241 62 74 chrX 136516163 136516325 -40457815 - L1ME3A LINE L1 -49 6121 5962 1976 183 23 3 chrX 136516444 136516794 -40457346 + MLT1A1 LTR MaLR 8 364 -1 1268 236 193 30 chrX 136516856 136517044 -40457096 + MER76 LTR ERV 1 157 -531 180 77 0 0 chrX 136517044 136517070 -40457070 + (CCCTAG)n Simple_repeat Simple_repeat 2 27 0 1268 236 193 30 chrX 136517070 136517317 -40456823 + MER76 LTR ERV 157 507 -181 258 167 9 19 chrX 136517351 136517423 -40456717 - MIR SINE MIR -92 116 47 26 82 0 0 chrX 136517868 136517929 -40456211 + AT_rich Low_complexity Low_complexity 1 61 0 496 305 16 31 chrX 136519278 136519497 -40454643 + CT-rich Low_complexity Low_complexity 1 215 0 285 298 165 8 chrX 136520035 136520156 -40453984 + MER91C DNA MER1_type 1 140 0 7741 204 44 5 chrX 136521125 136522601 -40451539 + ERVL LTR ERVL 1292 2824 -2940 206 308 32 108 chrX 136525397 136525582 -40448558 - MIR SINE MIR -89 173 3 1074 213 58 67 chrX 136526501 136526830 -40447310 - MLT1A2 LTR MaLR -48 326 1 4433 192 19 18 chrX 136527263 136528827 -40445313 - L1MB8 LINE L1 0 6178 4615 638 165 85 132 chrX 136529116 136529141 -40444999 - MER49 LTR ERV1 0 923 898 2306 94 0 7 chrX 136529141 136529438 -40444702 + AluSc SINE Alu 1 295 -14 638 165 85 132 chrX 136529438 136529624 -40444516 - MER49 LTR ERV1 -25 898 722 2157 109 49 78 chrX 136529625 136530010 -40444130 - THE1C LTR MaLR -1 374 1 2944 118 35 6 chrX 136530010 136530774 -40443366 - THE1C-int LTR MaLR 0 1580 730 3315 162 24 14 chrX 136530785 136531365 -40442775 - MER49 LTR ERV1 -210 713 128 7582 80 8 2 chrX 136531413 136532376 -40441764 - LTR5 LTR ERVK 0 969 1 389 297 43 51 chrX 136533585 136533841 -40440299 + LTR16C LTR ERVL 77 330 -161 * 528 232 50 30 chrX 136533834 136534032 -40440108 + LTR16C LTR ERVL 280 481 -10 228 203 215 13 chrX 136534034 136534113 -40440027 - HAL1 LINE L1 -847 1660 1566 375 23 0 0 chrX 136534959 136535003 -40439137 + (CA)n Simple_repeat Simple_repeat 2 45 0 844 128 0 71 chrX 136535548 136535689 -40438451 - FLAM_C SINE Alu -2 131 1 218 323 156 10 chrX 136537173 136537269 -40436871 + MIR SINE MIR 5 114 -148 246 170 264 66 chrX 136539791 136539897 -40434243 - LTR53 LTR ERVL -392 127 1 2444 132 44 30 chrX 136540082 136540515 -40433625 - L1MA8 LINE L1 -5 6286 5848 15439 180 37 10 chrX 136540528 136546694 -40427446 - L1MA4A LINE L1 -5 7000 664 33 0 0 0 chrX 136546737 136546770 -40427370 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chrX 136547190 136547223 -40426917 + AT_rich Low_complexity Low_complexity 1 33 0 29 84 0 0 chrX 136547256 136547327 -40426813 + AT_rich Low_complexity Low_complexity 1 71 0 2256 119 0 0 chrX 136548679 136548974 -40425166 + AluSg SINE Alu 1 295 -15 21 57 0 0 chrX 136549063 136549098 -40425042 + AT_rich Low_complexity Low_complexity 1 35 0 259 214 0 0 chrX 136549111 136549170 -40424970 - HsTC2 DNA Tc2 -1837 61 3 245 364 19 0 chrX 136549349 136549511 -40424629 - L1M4 LINE L1 -2259 3887 3723 1777 176 58 63 chrX 136549613 136550011 -40424129 - MSTD LTR MaLR 0 396 1 30 0 0 0 chrX 136550014 136550044 -40424096 + AT_rich Low_complexity Low_complexity 1 30 0 215 271 58 87 chrX 136550064 136550271 -40423869 - L2 LINE L2 -1659 1655 1455 847 199 215 31 chrX 136550296 136550425 -40423715 + MLT1D LTR MaLR 197 301 -204 3074 124 58 8 chrX 136550425 136550894 -40423246 + LTR22B LTR ERVK 1 492 0 847 199 215 31 chrX 136550894 136551025 -40423115 + MLT1D LTR MaLR 301 505 0 3140 199 70 76 chrX 136551028 136551188 -40422952 - LTR52-int LTR ERVL -1865 1691 1531 323 77 0 19 chrX 136551188 136551240 -40422900 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 3140 199 70 76 chrX 136551240 136551985 -40422155 - LTR52-int LTR ERVL -2025 1531 792 2725 228 42 2 chrX 136552053 136552645 -40421495 - LTR52-int LTR ERVL -2940 616 1 348 24 0 0 chrX 136552656 136552697 -40421443 + (CA)n Simple_repeat Simple_repeat 1 41 0 352 155 14 14 chrX 136552700 136552771 -40421369 - LTR52 LTR ERVL -90 331 261 294 329 61 30 chrX 136552832 136552996 -40421144 - MIR SINE MIR -78 184 16 280 246 0 0 chrX 136553828 136553893 -40420247 + MIR SINE MIR 179 243 -19 2133 174 31 28 chrX 136553938 136554479 -40419661 + pTR5 LTR ERV1 741 1283 -1155 346 277 8 34 chrX 136554585 136554704 -40419436 - MIR SINE MIR -116 146 31 198 0 0 0 chrX 136554807 136554829 -40419311 + (CAA)n Simple_repeat Simple_repeat 3 24 0 328 102 20 0 chrX 136554923 136554972 -40419168 + HERVL LTR ERVL 1768 1817 -3837 275 348 37 30 chrX 136556076 136556240 -40417900 + MER5A DNA MER1_type 25 189 0 21 0 0 0 chrX 136556681 136556702 -40417438 + GC_rich Low_complexity Low_complexity 1 21 0 367 226 206 13 chrX 136557254 136557409 -40416731 - MIR SINE MIR -6 256 72 735 237 30 35 chrX 136557744 136557942 -40416198 + MIR SINE MIR 65 261 -1 429 239 200 19 chrX 136558342 136558497 -40415643 + MER3 DNA MER1_type 23 205 -4 561 177 18 0 chrX 136559366 136559479 -40414661 - MER20B DNA MER1_type 0 783 669 577 229 128 22 chrX 136559504 136559683 -40414457 + MER58C DNA MER1_type 15 212 -3 1215 244 128 23 chrX 136559701 136560131 -40414009 - MER20B DNA MER1_type -149 634 160 1250 225 42 13 chrX 136560497 136560808 -40413332 + MER33 DNA MER1_type 5 324 0 282 223 0 37 chrX 136561518 136561630 -40412510 + MER5A DNA MER1_type 1 189 0 2062 101 76 3 chrX 136561734 136562022 -40412118 - AluSx SINE Alu -3 309 1 753 319 62 68 chrX 136562304 136563252 -40410888 - L2 LINE L2 0 3272 2323 255 31 0 0 chrX 136563396 136563428 -40410712 + (A)n Simple_repeat Simple_repeat 1 32 0 1407 227 45 5 chrX 136564675 136565113 -40409027 - MLT1F1 LTR MaLR -9 558 3 1030 92 0 0 chrX 136565400 136565542 -40408598 - L1MA5 LINE L1 0 6300 6159 243 130 37 56 chrX 136565542 136565596 -40408544 + L1MA5 LINE L1 5915 5967 -333 574 234 69 0 chrX 136565824 136565969 -40408171 - L1ME LINE L1 -468 5653 5499 1299 82 11 11 chrX 136566933 136567117 -40407023 - L1MA2 LINE L1 0 6304 6121 3824 198 23 17 chrX 136567424 136568289 -40405851 - L1MB8 LINE L1 -1 6246 5344 2401 144 9 77 chrX 136568289 136568755 -40405385 - Tigger2a DNA MER2_type 0 434 1 3824 198 23 17 chrX 136568755 136569232 -40404908 - L1MB8 LINE L1 -903 5344 4871 1547 266 74 31 chrX 136569220 136570213 -40403927 - L1MB8 LINE L1 -3490 2725 1738 * 461 236 62 42 chrX 136573595 136573739 -40400401 - MER103 DNA DNA -11 155 9 200 268 0 0 chrX 136574033 136574074 -40400066 + (CA)n Simple_repeat Simple_repeat 2 42 0 282 220 180 0 chrX 136575351 136575451 -40398689 + MIR SINE MIR 134 251 -11 230 267 192 20 chrX 136575478 136575733 -40398407 - L1M4 LINE L1 -3116 3030 2732 2201 111 3 3 chrX 136577202 136577499 -40396641 - AluSx SINE Alu -15 297 1 1183 277 109 28 chrX 136577639 136578134 -40396006 + MLT1H1 LTR MaLR 10 544 -11 2478 68 10 0 chrX 136578223 136578531 -40395609 + AluY SINE Alu 1 311 0 2375 150 38 21 chrX 136578534 136578955 -40395185 + L1MA9 LINE L1 5358 5785 -527 15519 122 20 30 chrX 136578961 136579197 -40394943 + Tigger1 DNA MER2_type 1 238 -2180 2094 147 41 22 chrX 136579197 136579565 -40394575 - THE1C LTR MaLR 0 375 1 10325 126 14 42 chrX 136579565 136581189 -40392951 - THE1C-int LTR MaLR 0 1580 4 1876 122 119 29 chrX 136581192 136581536 -40392604 - THE1C LTR MaLR 0 375 1 15519 122 20 30 chrX 136581536 136583736 -40390404 + Tigger1 DNA MER2_type 239 2418 0 2790 142 43 2 chrX 136583736 136584223 -40389917 + L1MA9 LINE L1 5782 6288 -24 698 194 8 39 chrX 136584502 136584631 -40389509 + FLAM_A SINE Alu 1 125 -17 1078 223 93 62 chrX 136584633 136585018 -40389122 - MER57A LTR ERV1 -4 399 3 2115 121 0 0 chrX 136585421 136585710 -40388430 + AluSx SINE Alu 1 289 -23 2234 116 7 0 chrX 136586378 136586679 -40387461 + AluSx SINE Alu 1 303 -9 1733 167 3 41 chrX 136587243 136587561 -40386579 + AluJo SINE Alu 1 306 -6 3073 103 23 23 chrX 136588482 136588910 -40385230 + MSTA LTR MaLR 1 428 0 21 36 0 0 chrX 136589878 136589906 -40384234 + AT_rich Low_complexity Low_complexity 1 28 0 377 228 81 16 chrX 136590267 136590390 -40383750 + MIR SINE MIR 128 258 -4 31 0 0 0 chrX 136590609 136590640 -40383500 + AT_rich Low_complexity Low_complexity 1 31 0 3496 147 7 29 chrX 136590726 136591278 -40382862 + MLT2B3 LTR ERVL 2 541 -13 633 191 118 13 chrX 136593479 136593631 -40380509 + MER45A DNA AcHobo 11 178 0 226 324 69 0 chrX 136594373 136594475 -40379665 - MIR SINE MIR -44 218 110 208 147 0 0 chrX 136594928 136594962 -40379178 + (TAAAAA)n Simple_repeat Simple_repeat 3 36 0 1714 228 49 53 chrX 136595633 136596102 -40378038 + MLT1C LTR MaLR 1 467 0 26 0 0 0 chrX 136597898 136597924 -40376216 + AT_rich Low_complexity Low_complexity 1 26 0 332 113 0 81 chrX 136597929 136597991 -40376149 - MLT2B1 LTR ERVL 0 520 464 282 113 0 0 chrX 136597974 136598027 -40376113 + LTR66 LTR ERVL 396 448 -162 * 243 200 0 0 chrX 136598030 136598075 -40376065 + L1MC4 LINE L1 6658 6702 -1340 262 141 51 26 chrX 136598113 136598191 -40375949 + (TA)n Simple_repeat Simple_repeat 2 81 0 432 165 10 62 chrX 136598203 136598300 -40375840 - MLT2D LTR ERVL -64 456 365 702 101 0 10 chrX 136598304 136598403 -40375737 + MER4A LTR ERV1 1 98 -566 351 115 19 0 chrX 136598403 136598455 -40375685 + MER4A LTR ERV1 261 313 -351 3442 31 3 5 chrX 136598475 136598864 -40375276 - L1PA4 LINE L1 -3 6152 5765 11121 33 3 1 chrX 136598864 136600202 -40373938 + L1P LINE L1 2521 3864 -2282 265 131 49 82 chrX 136600202 136600263 -40373877 + MER4E LTR ERV1 517 575 -204 * 1460 146 18 9 chrX 136600258 136600484 -40373656 + MER4A LTR ERV1 437 664 0 1326 197 38 21 chrX 136600500 136600790 -40373350 - MLT2D LTR ERVL -118 296 2 817 276 44 67 chrX 136601299 136601721 -40372419 + ERVL LTR ERVL 4903 5283 -202 617 302 11 6 chrX 136601951 136602130 -40372010 + LTR33 LTR ERVL 1 180 -341 1138 248 26 49 chrX 136602589 136602980 -40371160 + LTR16C LTR ERVL 96 477 -14 252 0 0 0 chrX 136603958 136603986 -40370154 + (CA)n Simple_repeat Simple_repeat 2 29 0 829 154 0 15 chrX 136604475 136604611 -40369529 - AluJo SINE Alu -178 134 1 1652 80 76 12 chrX 136605051 136605301 -40368839 + MLT2A1 LTR ERVL 1 266 -178 2224 101 10 10 chrX 136605323 136605629 -40368511 + AluSq SINE Alu 1 306 -7 6955 50 13 14 chrX 136605641 136605911 -40368229 + HERVL-A1 LTR ERVL 4805 5074 -580 2331 72 28 0 chrX 136605911 136606202 -40367938 + AluSx SINE Alu 1 299 -13 6955 50 13 14 chrX 136606202 136606782 -40367358 + HERVL-A1 LTR ERVL 5074 5654 0 3056 90 64 9 chrX 136606782 136607159 -40366981 + MLT2A1 LTR ERVL 1 405 -39 378 0 0 0 chrX 136607159 136607201 -40366939 + (TA)n Simple_repeat Simple_repeat 2 43 0 3056 90 64 9 chrX 136607201 136607244 -40366896 + MLT2A1 LTR ERVL 405 444 0 276 287 139 10 chrX 136608267 136608368 -40365772 + MIR SINE MIR 1 114 -148 227 143 0 18 chrX 136608948 136609004 -40365136 + (TG)n Simple_repeat Simple_repeat 1 55 0 2403 85 3 0 chrX 136610239 136610545 -40363595 - AluSg SINE Alu -3 307 1 5178 161 14 12 chrX 136610576 136611461 -40362679 - MER49 LTR ERV1 -37 886 1 2153 114 0 10 chrX 136611683 136611980 -40362160 - AluSg SINE Alu -16 294 1 457 324 53 12 chrX 136613064 136613234 -40360906 - LTR33 LTR ERVL -341 180 4 623 329 79 35 chrX 136613457 136614229 -40359911 - ERVL LTR ERVL -409 5245 4443 213 155 52 0 chrX 136615011 136615069 -40359071 + CT-rich Low_complexity Low_complexity 2 62 0 276 30 0 0 chrX 136615495 136615528 -40358612 + (CA)n Simple_repeat Simple_repeat 2 34 0 317 320 0 24 chrX 136615740 136615865 -40358275 + ERVL LTR ERVL 2988 3109 -2655 3278 284 41 27 chrX 136615929 136616113 -40358027 + ERVL LTR ERVL 4193 4373 -1391 2118 182 3 27 chrX 136616113 136616487 -40357653 - MLT1A1 LTR MaLR 0 365 1 3278 284 41 27 chrX 136616487 136617375 -40356765 + ERVL LTR ERVL 4373 5280 -484 2169 101 0 7 chrX 136617476 136617763 -40356377 + AluSg SINE Alu 1 285 -25 7687 81 2 2 chrX 136617764 136618732 -40355408 + LTR5 LTR ERVK 2 969 0 801 331 47 6 chrX 136618899 136619240 -40354900 + L2 LINE L2 856 1210 -2104 383 321 25 37 chrX 136619250 136619412 -40354728 + L2 LINE L2 1509 1668 -1646 25 51 0 0 chrX 136619438 136619477 -40354663 + AT_rich Low_complexity Low_complexity 1 39 0 216 273 0 0 chrX 136619550 136619616 -40354524 + T-rich Low_complexity Low_complexity 1 66 0 456 188 36 97 chrX 136619618 136619783 -40354357 + MER34 LTR ERV1 388 542 0 248 208 14 14 chrX 136619783 136619855 -40354285 + L1MB8 LINE L1 3898 3969 -2177 2350 176 51 0 chrX 136619959 136620408 -40353732 + L1MB8 LINE L1 5519 5990 -188 2026 176 101 36 chrX 136620406 136620873 -40353267 + L1M4b LINE L1 881 1377 -5482 * 1875 269 9 7 chrX 136620893 136621351 -40352789 + L1M4 LINE L1 1 459 -6083 299 130 74 0 chrX 136621352 136621406 -40352734 + L1M4 LINE L1 2888 2945 -3699 * 1510 227 143 25 chrX 136621391 136622222 -40351918 + L1ME1 LINE L1 4303 5498 -668 363 238 41 5 chrX 136622237 136622350 -40351790 - MLT1F LTR MaLR -458 84 1 834 192 0 0 chrX 136622350 136622517 -40351623 + L1ME1 LINE L1 5755 5921 -243 3340 174 36 13 chrX 136622565 136623170 -40350970 + LTR31 LTR ERV1 1 619 0 243 128 0 0 chrX 136623276 136623315 -40350825 + MER3 DNA MER1_type 11 49 -160 299 274 0 0 chrX 136623315 136623399 -40350741 + L1ME1 LINE L1 6058 6141 -25 1069 273 39 34 chrX 136623459 136623847 -40350293 + MER93a LTR ERV1 5 394 -8 298 186 29 43 chrX 136623857 136623927 -40350213 + L1MDa LINE L1 138 206 -6334 755 107 9 0 chrX 136623927 136624039 -40350101 - AluJb SINE Alu -1 311 199 386 273 109 0 chrX 136674692 136674820 -40299320 + MIR SINE MIR 71 212 -50 1848 260 85 36 chrX 136675324 136676074 -40298066 + L1MDa LINE L1 292 1078 -5360 181 306 138 88 chrX 136676267 136676810 -40297330 + L2 LINE L2 2177 2746 -568 253 63 48 32 chrX 136677595 136677658 -40296482 + (TA)n Simple_repeat Simple_repeat 2 65 0 351 352 100 12 chrX 136677707 136677931 -40296209 - MIR SINE MIR -10 252 13 349 255 152 44 chrX 136678151 136678355 -40295785 - L1ME4a LINE L1 -38 6083 5858 257 194 215 11 chrX 136678931 136679024 -40295116 - L1ME4a LINE L1 -152 5969 5858 485 262 139 23 chrX 136679553 136679725 -40294415 - MIR3 SINE MIR -7 201 10 426 256 149 18 chrX 136679888 136680056 -40294084 - L2 LINE L2 0 3313 3124 2244 149 28 0 chrX 136680696 136681058 -40293082 + L1MA9 LINE L1 5695 6066 -246 454 295 86 89 chrX 136681078 136681427 -40292713 + L2 LINE L2 2894 3241 -31 189 0 0 0 chrX 136682279 136682300 -40291840 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 328 0 0 chrX 136682395 136682456 -40291684 + (CA)n Simple_repeat Simple_repeat 2 62 0 528 295 55 32 chrX 136682716 136682933 -40291207 + MIR SINE MIR 14 235 -27 878 233 0 0 chrX 136683343 136683523 -40290617 + MIR SINE MIR 18 197 -65 2062 152 48 114 chrX 136684457 136684957 -40289183 - MLT1C LTR MaLR 0 467 1 300 368 88 35 chrX 136684984 136685302 -40288838 + L2 LINE L2 925 1259 -2055 514 176 114 23 chrX 136685302 136685337 -40288803 - MLT2D LTR ERVL -9 405 375 339 25 0 0 chrX 136685337 136685377 -40288763 + (TG)n Simple_repeat Simple_repeat 2 41 0 514 176 114 23 chrX 136685377 136685472 -40288668 - MLT2D LTR ERVL -39 375 263 198 388 12 0 chrX 136685749 136685834 -40288306 + L2 LINE L2 3187 3272 0 1295 104 0 59 chrX 136686000 136686181 -40287959 - L1MA9 LINE L1 -32 6280 6113 839 198 0 0 chrX 136686181 136686307 -40287833 - FLAM_A SINE Alu -6 127 2 1295 104 0 59 chrX 136686307 136686345 -40287795 - L1MA9 LINE L1 -199 6113 6074 295 277 40 17 chrX 136686611 136686766 -40287374 - MLT1J2 LTR MaLR -22 406 277 2532 180 73 60 chrX 136686896 136686928 -40287212 + MER45B DNA AcHobo 415 445 -1136 2641 62 0 0 chrX 136686928 136687237 -40286903 + AluY SINE Alu 1 309 -2 2532 180 73 60 chrX 136687237 136687665 -40286475 + MER45B DNA AcHobo 445 887 -694 1879 143 17 0 chrX 136687665 136687958 -40286182 + AluJb SINE Alu 1 298 -14 2532 180 73 60 chrX 136687958 136688114 -40286026 + MER45B DNA AcHobo 887 1040 0 957 115 7 0 chrX 136688186 136688325 -40285815 + L1MA4A LINE L1 6163 6302 -1 1941 147 27 0 chrX 136688325 136688624 -40285516 + AluJb SINE Alu 1 307 -5 431 214 12 0 chrX 136688776 136688860 -40285280 + MER112 DNA MER1_type 176 260 0 473 293 168 0 chrX 136689322 136689513 -40284627 + MIR SINE MIR 6 228 -34 1123 170 13 61 chrX 136689651 136689881 -40284259 + MER20 DNA MER1_type 1 219 0 308 202 32 129 chrX 136690467 136690591 -40283549 - MIR SINE MIR -52 210 99 1649 212 68 68 chrX 136690910 136691367 -40282773 + Charlie1a DNA MER1_type 1 457 -998 358 117 17 0 chrX 136691368 136691428 -40282712 + Charlie1a DNA MER1_type 909 969 -486 4208 223 56 24 chrX 136691430 136692594 -40281546 + L1ME1 LINE L1 3526 4726 -1420 495 283 22 17 chrX 136692588 136692768 -40281372 + L1M2b LINE L1 1199 1379 -5830 * 1793 212 21 0 chrX 136692770 136693110 -40281030 - L1M2 LINE L1 -6498 351 5 2830 195 14 78 chrX 136693110 136693879 -40280261 + L1ME1 LINE L1 5304 6023 -143 247 242 0 0 chrX 136693896 136693956 -40280184 + L1MA10 LINE L1 6007 6225 -100 226 178 0 0 chrX 136693959 136694004 -40280136 + Alu SINE Alu 40 84 -216 2241 93 7 3 chrX 136694004 136694295 -40279845 + AluSx SINE Alu 1 292 -20 2352 236 27 10 chrX 136694297 136694818 -40279322 + MLT1F1 LTR MaLR 21 550 -17 264 221 0 77 chrX 136694850 136694954 -40279186 + L1MA9 LINE L1 6217 6312 0 1513 169 14 7 chrX 136694958 136695237 -40278903 + Charlie1a DNA MER1_type 958 1238 -217 1903 125 0 4 chrX 136695462 136695726 -40278414 + AluSx SINE Alu 35 297 -15 1536 216 99 0 chrX 136695788 136696173 -40277967 + L1ME2 LINE L1 5732 6154 -10 683 299 140 19 chrX 136696321 136696979 -40277161 + L2 LINE L2 2530 3313 0 180 225 0 25 chrX 136697130 136697170 -40276970 + MER5A DNA MER1_type 129 167 -22 366 198 154 0 chrX 136697225 136697316 -40276824 - L2 LINE L2 -46 3267 3163 933 181 0 18 chrX 136697533 136697704 -40276436 - MER5B DNA MER1_type -3 175 8 258 303 90 51 chrX 136697800 136697978 -40276162 + MER5A DNA MER1_type 1 185 -4 224 57 0 29 chrX 136698314 136698349 -40275791 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2000 129 3 30 chrX 136698351 136698646 -40275494 - AluSx SINE Alu -25 287 1 1585 143 17 33 chrX 136698654 136698955 -40275185 - L1MC/D LINE L1 -555 6081 5786 1607 190 33 68 chrX 136698956 136699411 -40274729 + MSTD LTR MaLR 1 428 0 1179 252 5 5 chrX 136699411 136699843 -40274297 - L1MC/D LINE L1 -751 5789 5252 5771 229 37 17 chrX 136699952 136701558 -40272582 - L1MC/D LINE L1 -2129 4411 2774 4074 213 65 17 chrX 136701553 136702672 -40271468 - L1MC/D LINE L1 -4087 2453 1281 * 2520 144 5 0 chrX 136702677 136703059 -40271081 - L1PA15 LINE L1 0 6165 5782 1905 155 0 17 chrX 136703059 136703355 -40270785 - AluJo SINE Alu -21 291 1 2222 240 38 17 chrX 136703355 136703954 -40270186 - L1MC/D LINE L1 -5329 1211 600 520 150 0 0 chrX 136703983 136704063 -40270077 - L1MC/D LINE L1 -6136 404 325 1278 159 25 0 chrX 136704168 136704369 -40269771 - AluJo SINE Alu -106 206 1 400 214 0 87 chrX 136704385 136704488 -40269652 - L1MC/D LINE L1 -6446 94 1 772 217 80 0 chrX 136704528 136704703 -40269437 - MER5A DNA MER1_type 0 189 1 468 205 19 137 chrX 136704720 136704881 -40269259 - MER5B DNA MER1_type 0 178 37 2438 175 14 46 chrX 136704881 136705199 -40268941 + L1MB7 LINE L1 5689 6016 -168 2552 115 59 57 chrX 136705199 136705389 -40268751 + MSTC LTR MaLR 1 189 -239 477 0 0 0 chrX 136705389 136705442 -40268698 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1841 170 0 0 chrX 136705447 136705729 -40268411 - AluJo SINE Alu -30 282 1 2552 115 59 57 chrX 136705729 136705957 -40268183 + MSTC LTR MaLR 192 426 -2 2438 175 14 46 chrX 136705957 136706134 -40268006 + L1MB7 LINE L1 6016 6168 -16 210 324 14 14 chrX 136706279 136706353 -40267787 - MER5A DNA MER1_type -1 188 115 3982 117 5 30 chrX 136706468 136707067 -40267073 - L1PB3 LINE L1 0 6154 5571 282 246 76 34 chrX 136707515 136707633 -40266507 - L1ME4a LINE L1 -44 6077 5955 1357 204 101 16 chrX 136707761 136708079 -40266061 + MER2 DNA MER2_type 1 345 0 299 271 54 78 chrX 136708132 136708462 -40265678 + HAL1b LINE L1 1110 6093 -28 228 221 73 15 chrX 136708767 136708835 -40265305 - L2 LINE L2 -890 2424 2353 1401 267 55 82 chrX 136708853 136709459 -40264681 - MLT1G LTR MaLR -6 584 1 217 348 33 11 chrX 136709680 136709772 -40264368 + L2 LINE L2 2778 2871 -443 679 217 108 117 chrX 136709817 136710278 -40263862 - LTR16A1 LTR ERVL 0 457 1 1660 105 138 18 chrX 136710351 136710627 -40263513 - AluSg1 SINE Alu 0 309 1 557 325 88 28 chrX 136710631 136710914 -40263226 + L2 LINE L2 2968 3267 -5 935 144 144 0 chrX 136711114 136711310 -40262830 + L1PA14 LINE L1 5957 6175 0 342 287 74 0 chrX 136712592 136712714 -40261426 + MIR SINE MIR 118 248 -14 454 194 294 12 chrX 136712883 136713043 -40261097 + L2 LINE L2 3101 3305 -8 836 332 98 16 chrX 136713078 136713527 -40260613 + L2 LINE L2 2394 2879 -435 916 131 7 0 chrX 136713956 136714093 -40260047 + FLAM_C SINE Alu 1 138 -5 255 61 0 0 chrX 136714134 136714167 -40259973 + (TTA)n Simple_repeat Simple_repeat 3 35 0 654 154 114 8 chrX 136714167 136714290 -40259850 - MIR SINE MIR -126 136 1 198 0 0 0 chrX 136714358 136714380 -40259760 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 1819 183 0 3 chrX 136714843 136715143 -40258997 + AluJb SINE Alu 1 299 -13 294 222 323 10 chrX 136715810 136715909 -40258231 - L2 LINE L2 -5 3308 3179 190 0 32 32 chrX 136716148 136716179 -40257961 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 2065 135 0 0 chrX 136716818 136717107 -40257033 + AluSx SINE Alu 1 289 -23 1638 209 112 24 chrX 136717189 136717687 -40256453 + MLT1E LTR MaLR 13 593 0 249 187 56 28 chrX 136718068 136718119 -40256021 + (TA)n Simple_repeat Simple_repeat 2 50 -61 216 0 0 0 chrX 136718119 136718143 -40255997 + (GA)n Simple_repeat Simple_repeat 2 25 0 249 187 56 28 chrX 136718143 136718166 -40255974 + (TA)n Simple_repeat Simple_repeat 50 71 -40 2167 111 0 3 chrX 136718166 136718455 -40255685 - AluSx SINE Alu -24 288 1 249 187 56 28 chrX 136718455 136718486 -40255654 + (TA)n Simple_repeat Simple_repeat 71 111 0 203 200 0 0 chrX 136718766 136718806 -40255334 + L2 LINE L2 3264 3303 -10 740 175 8 0 chrX 136718808 136718934 -40255206 + FRAM SINE Alu 14 140 -36 189 0 0 0 chrX 136718951 136718972 -40255168 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 182 37 37 0 chrX 136719879 136719906 -40254234 + (TCCCG)n Simple_repeat Simple_repeat 4 31 0 21 0 0 0 chrX 136720451 136720472 -40253668 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chrX 136720790 136720812 -40253328 + GC_rich Low_complexity Low_complexity 1 22 0 184 178 9 65 chrX 136720877 136720984 -40253156 + CT-rich Low_complexity Low_complexity 3 103 0 2116 89 6 58 chrX 136722146 136722471 -40251669 + AluSq SINE Alu 1 308 -5 326 317 14 21 chrX 136722609 136722751 -40251389 - L1ME4a LINE L1 -187 5934 5794 625 339 93 32 chrX 136725177 136725840 -40248300 + L2 LINE L2 2579 3294 -19 624 215 55 20 chrX 136726064 136726264 -40247876 - L1ME3 LINE L1 -1 6161 5955 235 271 0 0 chrX 136726336 136726395 -40247745 - L2 LINE L2 -3 3310 3252 322 236 0 14 chrX 136727580 136727652 -40246488 + MER3 DNA MER1_type 42 112 -97 408 144 144 15 chrX 136727680 136727812 -40246328 + MER3 DNA MER1_type 2436 2584 0 436 292 6 47 chrX 136728829 136729000 -40245140 - MIR SINE MIR 0 262 99 214 245 0 20 chrX 136729194 136729243 -40244897 + MIR SINE MIR 215 262 0 235 330 18 55 chrX 136730595 136730704 -40243436 + L2 LINE L2 2556 2660 -654 686 316 6 0 chrX 136731572 136731743 -40242397 + MIR3 SINE MIR 8 179 -29 1919 158 3 19 chrX 136731832 136732149 -40241991 + AluJo SINE Alu 1 312 0 1379 90 68 18 chrX 136732435 136732657 -40241483 - L1PA11 LINE L1 -1 6173 5941 1660 168 64 17 chrX 136733714 136734011 -40240129 - AluJo SINE Alu -1 311 1 399 330 73 41 chrX 136734741 136735083 -40239057 + L3 LINE CR1 153 505 -1072 22 0 0 0 chrX 136735338 136735360 -40238780 + AT_rich Low_complexity Low_complexity 1 22 0 221 297 40 14 chrX 136735415 136735489 -40238651 + L3 LINE CR1 631 706 -871 604 310 41 30 chrX 136736499 136736696 -40237444 - MIR3 SINE MIR -5 203 5 21 71 0 0 chrX 136736721 136736763 -40237377 + AT_rich Low_complexity Low_complexity 1 42 0 14465 137 34 30 chrX 136736797 136739203 -40234937 - Tigger1 DNA MER2_type -1 2417 3 845 249 30 53 chrX 136739215 136739480 -40234660 + MIR SINE MIR 4 262 0 345 47 0 0 chrX 136739770 136739813 -40234327 + (TCC)n Simple_repeat Simple_repeat 1 43 0 1798 121 0 79 chrX 136739820 136740135 -40234005 - AluJo SINE Alu -22 290 1 1264 190 52 0 chrX 136740310 136740620 -40233520 - MER33 DNA MER1_type -6 318 1 222 257 0 68 chrX 136740651 136740725 -40233415 + MIR SINE MIR 113 181 -81 2134 124 3 3 chrX 136741269 136741576 -40232564 + AluSx SINE Alu 1 307 -5 216 0 0 0 chrX 136741607 136741631 -40232509 + (GGAA)n Simple_repeat Simple_repeat 1 24 0 625 339 46 34 chrX 136741966 136742379 -40231761 + L2 LINE L2 2434 2851 -463 226 341 0 12 chrX 136742630 136742715 -40231425 + L2 LINE L2 3189 3272 0 366 152 61 0 chrX 136743134 136743200 -40230940 + MER91C DNA MER1_type 18 87 -53 227 327 133 0 chrX 136743248 136743373 -40230767 - MIR3 SINE MIR -82 126 2 23 33 0 0 chrX 136745366 136745396 -40228744 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chrX 136745528 136745558 -40228582 + AT_rich Low_complexity Low_complexity 1 30 0 216 200 0 0 chrX 136747071 136747121 -40227019 + (TA)n Simple_repeat Simple_repeat 1 50 0 213 39 0 0 chrX 136747273 136747299 -40226841 + (TTG)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chrX 136751024 136751046 -40223094 + AT_rich Low_complexity Low_complexity 1 22 0 1009 211 49 23 chrX 136752131 136752324 -40221816 + L1ME3A LINE L1 5842 6045 -125 1464 168 9 81 chrX 136752324 136752676 -40221464 - AluJb SINE Alu 0 312 1 1009 211 49 23 chrX 136752676 136752753 -40221387 + L1ME3A LINE L1 6045 6119 -51 208 254 85 0 chrX 136753115 136753174 -40220966 + MIR SINE MIR 43 106 -102 2394 82 10 3 chrX 136753937 136754242 -40219898 - AluSx SINE Alu -5 307 1 242 113 0 94 chrX 136754315 136754368 -40219772 + L2 LINE L2 3216 3263 -9 1744 164 4 4 chrX 136754752 136755032 -40219108 - AluJo SINE Alu -22 290 11 243 268 0 18 chrX 136756340 136756396 -40217744 + MIR3 SINE MIR 111 165 -43 979 183 122 0 chrX 136756441 136756671 -40217469 - L1MA10 LINE L1 0 6334 6077 366 179 0 0 chrX 136756671 136756738 -40217402 + L1MA7 LINE L1 5857 5923 -368 427 67 0 0 chrX 136756741 136756801 -40217339 - L1MD2 LINE L1 -14 6345 6286 2447 159 31 33 chrX 136756802 136757502 -40216638 + L1M3 LINE L1 5098 5802 -366 807 41 0 0 chrX 136757613 136757711 -40216429 + L1PA3 LINE L1 6053 6150 -5 212 267 0 0 chrX 136757751 136757796 -40216344 + (CATA)n Simple_repeat Simple_repeat 4 48 0 213 351 16 43 chrX 136758068 136758253 -40215887 + MIR3 SINE MIR 13 192 -16 243 333 24 0 chrX 136758401 136758485 -40215655 - L2 LINE L2 -1 3271 3186 441 247 99 6 chrX 136758612 136758774 -40215366 + MER96B DNA MER1_type? 2 178 -239 37362 77 7 7 chrX 136759788 136765787 -40208353 + L1PA6 LINE L1 11 6009 -145 3378 80 2 2 chrX 136765888 136766349 -40207791 + L1PA5 LINE L1 5694 6154 0 1781 176 7 0 chrX 136766431 136766737 -40207403 + AluJb SINE Alu 1 308 -4 3996 96 38 10 chrX 136767015 136767601 -40206539 - LTR43 LTR ERV1 0 602 1 4565 198 23 8 chrX 136767601 136768548 -40205592 - LTR43-int LTR ERV1 0 4798 3838 404 194 10 31 chrX 136768614 136768712 -40205428 - LTR43-int LTR ERV1 -967 3831 3736 657 323 28 17 chrX 136768946 136769299 -40204841 - LTR43-int LTR ERV1 -1074 3724 3368 2257 107 3 0 chrX 136769300 136769600 -40204540 - AluSq SINE Alu 0 313 13 570 264 0 0 chrX 136769862 136770010 -40204130 - LTR43-int LTR ERV1 -1620 6136 5989 228 86 0 0 chrX 136770091 136770126 -40204014 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 1357 191 45 4 chrX 136770131 136770398 -40203742 - AluSx SINE Alu -34 278 1 2552 314 72 69 chrX 136770454 136771271 -40202869 - LTR43-int LTR ERV1 -1894 5862 5049 1620 167 33 13 chrX 136771271 136771577 -40202563 + AluSx SINE Alu 1 312 0 2552 314 72 69 chrX 136771577 136775027 -40199113 - LTR43-int LTR ERV1 -2707 5049 1582 382 288 74 17 chrX 136775240 136775433 -40198707 - LTR43-int LTR ERV1 -5266 1825 1602 2238 251 62 72 chrX 136775451 136776417 -40197723 - LTR43-int LTR ERV1 -3842 956 1 3916 131 7 12 chrX 136776417 136777022 -40197118 - LTR43 LTR ERV1 0 602 1 1681 174 32 0 chrX 136777900 136778182 -40195958 + AluJb SINE Alu 1 291 -21 25 31 0 0 chrX 136778935 136778967 -40195173 + AT_rich Low_complexity Low_complexity 1 32 0 1559 171 11 4 chrX 136778973 136779237 -40194903 + AluJb SINE Alu 5 270 -42 231 85 0 21 chrX 136779241 136779288 -40194852 - LTR66 LTR ERVL -175 435 390 223 203 0 17 chrX 136779289 136779348 -40194792 + (TA)n Simple_repeat Simple_repeat 2 59 0 305 261 0 22 chrX 136779354 136779446 -40194694 + L1MC4 LINE L1 6614 6703 -1339 195 203 0 0 chrX 136779454 136779518 -40194622 + (TA)n Simple_repeat Simple_repeat 2 65 0 337 271 0 75 chrX 136779518 136779651 -40194489 + L1MC4 LINE L1 6581 6703 -1339 301 247 21 32 chrX 136779661 136779754 -40194386 + L1MC4 LINE L1 6614 6705 -1337 200 132 0 26 chrX 136779757 136779795 -40194345 + (TA)n Simple_repeat Simple_repeat 1 37 0 186 243 0 0 chrX 136779914 136780017 -40194123 + (TA)n Simple_repeat Simple_repeat 1 103 0 331 186 0 72 chrX 136780023 136780120 -40194020 + L1MC4 LINE L1 6614 6703 -1339 316 261 23 0 chrX 136780144 136780232 -40193908 + L1MC4 LINE L1 6614 6703 -1339 336 171 0 0 chrX 136780238 136780320 -40193820 + (TA)n Simple_repeat Simple_repeat 2 83 0 303 216 45 23 chrX 136780326 136780414 -40193726 + L1MC4 LINE L1 6614 6703 -1339 318 208 0 83 chrX 136780424 136780520 -40193620 + L1MC4 LINE L1 6614 6701 -1341 31 0 0 0 chrX 136780532 136780563 -40193577 + AT_rich Low_complexity Low_complexity 1 31 0 200 246 70 0 chrX 136781116 136781173 -40192967 - L2 LINE L2 -232 3081 3021 760 161 0 0 chrX 136781190 136781314 -40192826 + FLAM_C SINE Alu 3 126 -17 312 328 8 22 chrX 136781345 136781479 -40192661 - L2 LINE L2 -338 2976 2845 276 333 44 6 chrX 136782754 136782934 -40191206 + MIR SINE MIR 63 249 -13 213 267 59 59 chrX 136782968 136783069 -40191071 + L2 LINE L2 3154 3254 -18 639 110 0 0 chrX 136788932 136789023 -40185117 - AluS SINE Alu -221 92 2 2382 240 18 30 chrX 136789025 136789630 -40184510 - ERVL LTR ERVL -3322 2442 1845 1203 283 55 44 chrX 136789634 136790199 -40183941 - ERVL LTR ERVL -4305 1459 889 436 287 175 8 chrX 136790317 136790568 -40183572 + L2 LINE L2 3021 3313 0 431 265 8 0 chrX 136790584 136790701 -40183439 - MIR SINE MIR -74 188 71 545 300 35 18 chrX 136791167 136791394 -40182746 - MIR SINE MIR -11 251 21 328 339 44 6 chrX 136791955 136792135 -40182005 - MIR SINE MIR -13 249 63 265 328 5 65 chrX 136793377 136793563 -40180577 + L2 LINE L2 2802 2975 -338 23 0 0 0 chrX 136793579 136793602 -40180538 + AT_rich Low_complexity Low_complexity 1 23 0 524 183 0 0 chrX 136793602 136793695 -40180445 - FLAM SINE Alu -10 133 41 1797 282 20 26 chrX 136794000 136794721 -40179419 + LTR43-int LTR ERV1 525 2224 -3842 1838 311 74 80 chrX 136794904 136798319 -40175821 + LTR43-int LTR ERV1 1634 5068 -2688 1691 164 34 0 chrX 136798319 136798611 -40175529 - AluSx SINE Alu -6 306 5 1838 311 74 80 chrX 136798611 136798919 -40175221 + LTR43-int LTR ERV1 5068 5376 -2380 2210 101 0 19 chrX 136798919 136799235 -40174905 + AluSg SINE Alu 1 310 0 1838 311 74 80 chrX 136799235 136799764 -40174376 + LTR43-int LTR ERV1 5376 5862 -1894 1356 206 41 0 chrX 136799820 136800087 -40174053 + AluSx SINE Alu 1 278 -34 474 18 0 0 chrX 136800095 136800150 -40173990 + (TAAA)n Simple_repeat Simple_repeat 4 58 0 539 184 16 40 chrX 136800241 136800366 -40173774 + LTR43-int LTR ERV1 5992 6113 -1643 292 259 6 93 chrX 136800473 136800635 -40173505 + LTR43-int LTR ERV1 3224 3371 -1427 2005 132 3 3 chrX 136800637 136800924 -40173216 + AluSq SINE Alu 1 287 -26 198 0 0 0 chrX 136800928 136800950 -40173190 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 340 318 13 19 chrX 136800950 136801104 -40173036 + LTR43-int LTR ERV1 3363 3515 -1283 2388 171 3 0 chrX 136801106 136801497 -40172643 + LTR43-int LTR ERV1 4407 4798 0 4266 93 27 10 chrX 136801497 136802089 -40172051 + LTR43 LTR ERV1 1 602 0 1771 158 31 0 chrX 136802369 136802660 -40171480 - AluJo SINE Alu -12 300 1 21 36 0 0 chrX 136803183 136803211 -40170929 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 29 chrX 136803274 136803286 -40170854 + AT_rich Low_complexity Low_complexity 1 12 -21 2548 72 0 0 chrX 136803286 136803593 -40170547 - AluY SINE Alu -4 307 1 23 0 0 29 chrX 136803593 136803614 -40170526 + AT_rich Low_complexity Low_complexity 12 33 0 543 226 7 7 chrX 136804041 136804178 -40169962 - MER96B DNA MER1_type? -239 178 42 220 333 24 0 chrX 136804330 136804414 -40169726 + L2 LINE L2 3186 3271 -1 212 267 0 0 chrX 136805019 136805064 -40169076 + (TATG)n Simple_repeat Simple_repeat 4 48 0 5165 32 2 0 chrX 136805104 136805701 -40168439 - L1PA3 LINE L1 -5 6150 5553 2569 56 0 0 chrX 136805701 136806024 -40168116 + L1P LINE L1 4530 4852 -1294 375 267 10 0 chrX 136806024 136806125 -40168015 + ERVL LTR ERVL 2589 2690 -3074 2199 189 230 106 chrX 136806127 136807034 -40167106 + LTR28 LTR ERV1 1 1020 0 995 291 107 17 chrX 136807038 136807440 -40166700 + ERVL LTR ERVL 2693 3130 -2634 256 284 0 94 chrX 136807436 136807563 -40166577 + ERVL LTR ERVL 3606 3720 -2044 * 1439 261 35 42 chrX 136807565 136808133 -40166007 - MLT1E2 LTR MaLR -2 624 59 1516 227 30 25 chrX 136808157 136808522 -40165618 - MLT1A2 LTR MaLR 0 374 8 3721 217 45 20 chrX 136808550 136809047 -40165093 + ERVL LTR ERVL 3720 4250 -1514 2240 137 15 94 chrX 136809047 136809506 -40164634 + MER61B LTR ERV1 1 423 -2 3721 217 45 20 chrX 136809506 136809876 -40164264 + ERVL LTR ERVL 4250 4609 -1155 2873 234 49 12 chrX 136809949 136810709 -40163431 + ERVL LTR ERVL 4595 5382 -382 326 233 60 35 chrX 136820106 136820222 -40153918 - L2 LINE L2 -18 3254 3136 420 361 72 32 chrX 136820483 136820915 -40153225 - L2 LINE L2 -434 2880 2432 412 258 23 8 chrX 136820954 136821086 -40153054 - MER63A DNA MER1_type -25 185 52 980 303 122 25 chrX 136821144 136821734 -40152406 - L2 LINE L2 -889 2425 1779 2120 60 83 0 chrX 136822099 136822411 -40151729 + AluY SINE Alu 1 334 0 2245 125 3 3 chrX 136823013 136823325 -40150815 - AluSx SINE Alu 0 312 1 7321 194 56 43 chrX 136823325 136825686 -40148454 - L1MDa LINE L1 -2220 4320 1991 226 119 17 17 chrX 136825686 136825745 -40148395 + LTR66 LTR ERVL 383 441 -169 7321 194 56 43 chrX 136825745 136826518 -40147622 - L1MDa LINE L1 -4549 1991 1073 2046 130 3 17 chrX 136826518 136826818 -40147322 + AluSx SINE Alu 1 296 -16 7321 194 56 43 chrX 136826818 136827201 -40146939 - L1MDa LINE L1 -5467 1073 696 251 254 79 73 chrX 136827768 136827933 -40146207 + L2 LINE L2 2350 2515 -799 1268 198 8 8 chrX 136828147 136828399 -40145741 + MIR SINE MIR 11 262 0 369 267 76 30 chrX 136829131 136829262 -40144878 - MIR SINE MIR -79 183 47 27 49 0 0 chrX 136830287 136830328 -40143812 + AT_rich Low_complexity Low_complexity 1 41 0 1854 135 32 18 chrX 136830600 136830918 -40143222 - AluJb SINE Alu 0 322 1 194 281 12 49 chrX 136832939 136833021 -40141119 - MIR3 SINE MIR -43 165 87 195 167 0 0 chrX 136833761 136833803 -40140337 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 756 318 17 25 chrX 136835246 136835652 -40138488 - LTR16B LTR ERVL -24 440 38 476 270 48 32 chrX 136836344 136836546 -40137594 - MIR SINE MIR -53 209 5 392 297 148 14 chrX 136837488 136837697 -40136443 - MIR SINE MIR -12 250 14 357 24 0 0 chrX 136837859 136837901 -40136239 + (TG)n Simple_repeat Simple_repeat 2 43 0 248 206 0 32 chrX 136838054 136838117 -40136023 + MIR SINE MIR 104 164 -98 2264 110 0 3 chrX 136838119 136838419 -40135721 + AluSx SINE Alu 2 300 -12 1027 299 143 28 chrX 136839899 136840481 -40133659 + L2 LINE L2 1779 2427 -887 365 253 39 39 chrX 136840486 136840640 -40133500 + MER63 DNA MER1_type 7 786 -276 380 349 80 30 chrX 136840677 136841078 -40133062 + L2 LINE L2 2417 2837 -477 389 203 51 65 chrX 136841161 136841299 -40132841 + L2 LINE L2 3159 3294 -19 2194 201 14 32 chrX 136842440 136842947 -40131193 - MLT1D LTR MaLR -7 498 1 333 248 33 65 chrX 136844787 136844940 -40129200 + L1M4 LINE L1 64 211 -6331 1780 166 0 17 chrX 136844969 136845259 -40128881 + AluJb SINE Alu 1 285 -27 498 16 0 0 chrX 136847044 136847106 -40127034 - L1PA4 LINE L1 -3 6152 6091 241 194 15 15 chrX 136847507 136847574 -40126566 + GA-rich Low_complexity Low_complexity 2 68 0 2478 223 36 12 chrX 136847583 136848270 -40125870 + L1M4 LINE L1 1356 2059 -4587 523 150 14 82 chrX 136848317 136848464 -40125676 + L1MB4 LINE L1 5982 6118 -62 693 189 8 8 chrX 136848483 136848610 -40125530 + AluJb SINE Alu 1 127 -185 1075 196 88 49 chrX 136848924 136849368 -40124772 - MLT1C LTR MaLR 0 467 4 346 158 0 24 chrX 136849804 136849886 -40124254 + L1MB3 LINE L1 6103 6182 -1 307 164 27 27 chrX 136849900 136849973 -40124167 + L1MB8 LINE L1 6100 6172 -6 2308 233 32 1 chrX 136849976 136850684 -40123456 + L1M4 LINE L1 2680 3409 -3235 756 226 11 0 chrX 136850682 136850872 -40123268 + L1MB5 LINE L1 2640 2831 -3315 * 1668 179 74 24 chrX 136850868 136851109 -40123031 + L1MB5 LINE L1 4950 5177 -997 2069 132 0 0 chrX 136851109 136851415 -40122725 + AluSx SINE Alu 1 306 0 1668 179 74 24 chrX 136851415 136851873 -40122267 + L1MB5 LINE L1 5177 5675 -499 1359 141 81 4 chrX 136851874 136852122 -40122018 + L1PA11 LINE L1 5907 6173 -1 3046 105 5 2 chrX 136852131 136852579 -40121561 + L1PA13 LINE L1 5709 6157 -6 2402 163 28 31 chrX 136852583 136853093 -40121047 + L1MB5 LINE L1 5652 6159 -15 496 262 8 0 chrX 136853107 136853233 -40120907 + MLT1H1 LTR MaLR 360 486 -69 1730 171 26 3 chrX 136853471 136853776 -40120364 + AluJo SINE Alu 1 312 0 314 80 20 0 chrX 136853787 136853837 -40120303 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 918 228 137 86 chrX 136853943 136854373 -40119767 - MLT2F LTR ERVL -203 460 9 1530 241 91 49 chrX 136854376 136855014 -40119126 - ERVL-F LTR ERVL -12 5752 5088 671 270 52 17 chrX 136855092 136855325 -40118815 + ERVL LTR ERVL 1777 2017 -3747 992 258 33 4 chrX 136855351 136855626 -40118514 + ERVL LTR ERVL 3328 3610 -2154 448 240 164 6 chrX 136855633 136855804 -40118336 + MLT1E3 LTR MaLR 8 205 -419 1001 100 0 47 chrX 136855812 136855982 -40118158 + L1P4 LINE L1 5395 5556 -605 526 31 0 0 chrX 136855998 136856063 -40118077 - L1PA13 LINE L1 -205 5958 5894 420 259 57 38 chrX 136856163 136856375 -40117765 - HERVL LTR ERVL -3701 1953 1738 4215 105 2 0 chrX 136856466 136857073 -40117067 + L1PA13 LINE L1 5555 6162 -1 194 173 19 77 chrX 136857082 136857134 -40117006 - MIR3 SINE MIR -46 162 114 377 287 54 5 chrX 136857291 136857514 -40116626 + L1MD1 LINE L1 2316 2549 -3597 281 316 44 0 chrX 136858213 136858327 -40115813 - LTR41 LTR ERVL -196 577 459 1815 133 50 20 chrX 136858543 136858845 -40115295 + AluJo SINE Alu 2 312 0 381 339 11 17 chrX 136858847 136859024 -40115116 - LTR41 LTR ERVL -206 567 392 1178 249 70 19 chrX 136859318 136859859 -40114281 - L1M4 LINE L1 -2459 3687 3119 328 320 111 35 chrX 136860228 136860400 -40113740 - MIR SINE MIR -76 186 2 484 301 57 6 chrX 136861702 136861878 -40112262 - MIR SINE MIR -65 197 13 423 252 53 40 chrX 136862232 136862383 -40111757 + MIR SINE MIR 100 252 -10 226 204 66 7 chrX 136862449 136862601 -40111539 + (TA)n Simple_repeat Simple_repeat 1 161 0 33 0 0 0 chrX 136862601 136862634 -40111506 + AT_rich Low_complexity Low_complexity 1 33 0 10936 139 4 9 chrX 136862662 136864505 -40109635 - L1PA11 LINE L1 -2 6172 4337 2100 51 77 0 chrX 136864505 136864779 -40109361 - AluY SINE Alu -16 295 1 10936 139 4 9 chrX 136864779 136865565 -40108575 - L1PA11 LINE L1 -1837 4337 3549 2259 102 0 3 chrX 136865962 136866256 -40107884 - AluSx SINE Alu -19 293 1 1232 249 33 2 chrX 136866351 136866745 -40107395 + L1MD1 LINE L1 4097 4502 -1644 * 4938 153 26 18 chrX 136866743 136867704 -40106436 + L1MD1 LINE L1 5222 6189 -53 2182 134 10 0 chrX 136867734 136868041 -40106099 + AluSx SINE Alu 1 310 -2 2669 134 108 6 chrX 136868046 136868547 -40105593 - L1MB2 LINE L1 -7 6164 5613 2633 241 43 10 chrX 136869162 136869875 -40104265 - ERVL LTR ERVL -1308 4456 3720 368 179 221 21 chrX 136869879 136869974 -40104166 + MLT1E3 LTR MaLR 1 114 -510 23 0 0 0 chrX 136870203 136870226 -40103914 + AT_rich Low_complexity Low_complexity 1 23 0 1120 126 6 6 chrX 136870226 136870400 -40103740 - AluSg/x SINE Alu -18 294 121 282 253 0 0 chrX 136870570 136870584 -40103556 + AluSg/x SINE Alu 120 133 -167 2201 121 0 0 chrX 136870584 136870881 -40103259 + AluSx SINE Alu 1 297 -15 1270 167 103 8 chrX 136870987 136871239 -40102901 - AluJo SINE Alu -30 282 7 1982 102 11 14 chrX 136871302 136871610 -40102530 - AluSx SINE Alu 0 310 4 970 148 7 0 chrX 136871671 136871995 -40102145 - AluSc SINE Alu 0 449 125 249 114 0 0 chrX 136872028 136872063 -40102077 - AluSc SINE Alu -180 122 88 476 335 5 18 chrX 136872309 136872533 -40101607 + LTR41 LTR ERVL 392 612 -161 507 252 49 19 chrX 136873363 136873527 -40100613 - L1ME LINE L1 -621 5541 5374 343 180 0 0 chrX 136873539 136873600 -40100540 - Alu SINE Alu -4 298 238 351 244 44 7 chrX 136873632 136873767 -40100373 - L1ME LINE L1 -764 5398 5259 207 289 0 0 chrX 136873773 136873825 -40100315 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 508 133 61 3 chrX 136873984 136874282 -40099858 + (TA)n Simple_repeat Simple_repeat 1 315 0 252 320 121 40 chrX 136877083 136877889 -40096251 - L2 LINE L2 -19 3294 2432 424 293 23 46 chrX 136877929 136878103 -40096037 - MER63A DNA MER1_type -25 185 16 1027 290 126 37 chrX 136878119 136878713 -40095427 - L2 LINE L2 -889 2425 1779 264 258 45 22 chrX 136880150 136880239 -40093901 - L1MC3 LINE L1 0 7785 7695 481 232 94 20 chrX 136880492 136880699 -40093441 + MIR SINE MIR 1 224 -38 236 349 95 4 chrX 136880782 136881014 -40093126 - MIR SINE MIR -8 254 2 2054 115 0 3 chrX 136881225 136881561 -40092579 - AluSx SINE Alu 0 335 1 4940 89 35 18 chrX 136881561 136882237 -40091903 - L1PA11 LINE L1 -11 6163 5476 669 161 9 9 chrX 136882240 136882352 -40091788 - AluSp/q SINE Alu -39 274 163 1643 242 120 22 chrX 136882352 136883426 -40090714 - L1PA11 LINE L1 -715 5446 2316 4333 126 2 0 chrX 136883644 136884249 -40089891 - L1PA13 LINE L1 -3 6160 5555 1195 65 0 47 chrX 136884372 136884542 -40089598 - L1PA13 LINE L1 -605 5556 5395 499 241 165 6 chrX 136884550 136884720 -40089420 - MLT1E3 LTR MaLR -420 204 8 797 263 28 5 chrX 136884727 136884940 -40089200 - ERVL LTR ERVL -2154 3610 3393 1536 264 18 27 chrX 136885377 136885968 -40088172 + MER84-int LTR ERV1 627 2203 -3847 291 347 58 50 chrX 136886194 136886690 -40087450 + MER84-int LTR ERV1 1650 2149 -5607 261 180 0 20 chrX 136886707 136886757 -40087383 + MER84-int LTR ERV1 2368 2416 -2382 509 322 82 32 chrX 136887061 136887462 -40086678 + MER84-int LTR ERV1 2564 2984 -4772 665 323 35 42 chrX 136887618 136888405 -40085735 + MER84-int LTR ERV1 2787 4636 -1593 1533 334 42 46 chrX 136888428 136889084 -40085056 + MER84-int LTR ERV1 4401 5058 -2698 1879 174 0 10 chrX 136889084 136889395 -40084745 - AluSx SINE Alu -4 308 1 1533 334 42 46 chrX 136889395 136890206 -40083934 + MER84-int LTR ERV1 5058 5862 -1894 681 130 87 0 chrX 136890269 136890384 -40083756 + AluSp SINE Alu 23 147 -166 1153 118 15 93 chrX 136890386 136890590 -40083550 - AluSx SINE Alu -124 188 1 1704 164 0 43 chrX 136890794 136891224 -40082916 - AluJo SINE Alu 0 416 1 326 243 0 0 chrX 136891523 136891593 -40082547 - MLT2F LTR ERVL -58 605 536 918 266 64 24 chrX 136891621 136892004 -40082136 - MLT2F LTR ERVL -210 453 11 206 132 19 38 chrX 136892312 136892365 -40081775 + (TA)n Simple_repeat Simple_repeat 2 53 0 1037 247 8 0 chrX 136892465 136892700 -40081440 - ERVL LTR ERVL -439 5325 5089 677 291 29 44 chrX 136892718 136892792 -40081348 + ERVL LTR ERVL 1775 1849 -3915 197 32 0 32 chrX 136892792 136892823 -40081317 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 677 291 29 44 chrX 136892823 136893023 -40081117 + ERVL LTR ERVL 1849 2045 -3719 * 1057 279 37 4 chrX 136893019 136893291 -40080849 + ERVL LTR ERVL 3326 3606 -2158 2016 235 50 29 chrX 136893302 136893898 -40080242 + MLT1E2 LTR MaLR 8 626 0 411 286 9 0 chrX 136893899 136894011 -40080129 + ERVL LTR ERVL 3607 3719 -2045 486 265 102 81 chrX 136894123 136894455 -40079685 + L1M4 LINE L1 16 354 -6188 958 149 0 7 chrX 136894475 136894629 -40079511 - AluJb SINE Alu -27 285 133 359 301 49 59 chrX 136894750 136895036 -40079104 - L1 LINE L1 -2010 4136 3854 998 175 1 0 chrX 136895075 136895300 -40078840 - AluJb SINE Alu -22 290 88 398 269 95 44 chrX 136895492 136895786 -40078354 + LTR41 LTR ERVL 307 615 -158 1455 298 52 11 chrX 136895999 136896519 -40077621 - ERVL LTR ERVL -2759 3005 2465 1679 135 0 8 chrX 136896519 136896764 -40077376 - AluSx SINE Alu -69 243 1 864 151 7 0 chrX 136896764 136896903 -40077237 - AluSq/x SINE Alu -171 141 2 1332 181 0 59 chrX 136896948 136897236 -40076904 + L1PA16 LINE L1 5893 6163 -3 11898 143 13 4 chrX 136897946 136900556 -40073584 + L1PA11 LINE L1 3549 6174 0 22 0 0 0 chrX 136900584 136900606 -40073534 + AT_rich Low_complexity Low_complexity 1 22 0 219 105 47 47 chrX 136900606 136900692 -40073448 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 83 80 0 0 chrX 136900692 136900880 -40073260 + AT_rich Low_complexity Low_complexity 1 188 0 477 245 46 33 chrX 136900927 136901078 -40073062 - MIR SINE MIR -10 252 100 455 307 57 6 chrX 136901432 136901608 -40072532 + MIR SINE MIR 13 197 -65 313 314 111 35 chrX 136902911 136903083 -40071057 + MIR SINE MIR 2 186 -76 1395 253 82 11 chrX 136903438 136903964 -40070176 + L1M4 LINE L1 3107 3669 -2477 432 333 11 17 chrX 136904245 136904419 -40069721 + LTR41 LTR ERVL 392 564 -209 1935 115 51 14 chrX 136904419 136904715 -40069425 - AluJo SINE Alu -4 308 2 342 307 44 0 chrX 136904928 136905042 -40069098 + LTR41 LTR ERVL 459 577 -196 369 0 0 0 chrX 136905582 136905623 -40068517 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 174 22 0 chrX 136905994 136906040 -40068100 + LTR41 LTR ERVL 567 613 -160 569 186 27 109 chrX 136906291 136906474 -40067666 + LTR41 LTR ERVL 593 760 -13 755 214 150 69 chrX 136906721 136907288 -40066852 - L1ME LINE L1 -601 5561 4944 2734 240 44 7 chrX 136911368 136912072 -40062068 - ERVL LTR ERVL -382 5382 4653 331 62 0 86 chrX 136912262 136912343 -40061797 + (TA)n Simple_repeat Simple_repeat 2 75 0 231 225 22 56 chrX 136912364 136912453 -40061687 - MLT2F LTR ERVL -43 620 535 1826 150 10 29 chrX 136912479 136912785 -40061355 - AluSx SINE Alu -12 300 1 21312 33 0 3 chrX 136912852 136916057 -40058083 - L1PA4 LINE L1 0 6155 2957 4644 54 4 7 chrX 136916057 136917059 -40057081 + L1PA5 LINE L1 4769 6138 -16 1117 102 0 0 chrX 136917059 136917197 -40056943 + L1PA5 LINE L1 6004 6150 -4 4644 54 4 7 chrX 136917197 136917210 -40056930 + L1PA5 LINE L1 6138 6150 -4 752 272 51 14 chrX 136917217 136917434 -40056706 + MLT1E2 LTR MaLR 400 624 -2 423 219 19 19 chrX 136917437 136917542 -40056598 - ERVL LTR ERVL -2045 3719 3615 1531 308 52 11 chrX 136917548 136918187 -40055953 - ERVL LTR ERVL -2635 3129 2465 1608 135 4 8 chrX 136918187 136918431 -40055709 - AluSx SINE Alu -69 243 1 833 158 7 0 chrX 136918431 136918570 -40055570 - AluSq/x SINE Alu -172 141 2 1306 188 0 59 chrX 136918615 136918903 -40055237 + L1PA16 LINE L1 5893 6163 -3 4865 86 9 3 chrX 136919510 136920160 -40053980 - L1MA3 LINE L1 0 6305 5652 1755 134 18 39 chrX 136921033 136921341 -40052799 + AluJo SINE Alu 5 306 0 537 280 24 6 chrX 136921407 136921575 -40052565 + MLT1E2 LTR MaLR 214 384 -242 1276 226 48 3 chrX 136921576 136921886 -40052254 + L1M4 LINE L1 5376 5699 -485 1536 158 142 12 chrX 136922247 136922570 -40051570 + MLT1A1 LTR MaLR 1 365 0 434 160 58 0 chrX 136922696 136922944 -40051196 + (TA)n Simple_repeat Simple_repeat 1 262 0 4507 54 42 0 chrX 136922946 136923516 -40050624 - L1PA7 LINE L1 -16 6138 5545 1897 250 106 87 chrX 136923606 136924492 -40049648 - L1M4 LINE L1 -758 5388 4521 2200 113 0 0 chrX 136924492 136924785 -40049355 + AluSx SINE Alu 1 293 -19 1897 250 106 87 chrX 136924785 136925390 -40048750 - L1M4 LINE L1 -1625 4521 3858 186 43 0 0 chrX 136925390 136925413 -40048727 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1897 250 106 87 chrX 136925413 136925603 -40048537 - L1M4 LINE L1 -2288 3858 3673 208 203 63 0 chrX 136925693 136925772 -40048368 + (TA)n Simple_repeat Simple_repeat 1 84 0 257 143 54 0 chrX 136926433 136926489 -40047651 + L2 LINE L2 1951 2009 -1305 21 0 0 0 chrX 136926511 136926532 -40047608 + AT_rich Low_complexity Low_complexity 1 21 0 2068 120 3 0 chrX 136926559 136926851 -40047289 - AluSq SINE Alu -20 293 1 359 234 42 66 chrX 136927428 136927595 -40046545 + L2 LINE L2 3132 3294 -19 5127 119 24 12 chrX 136929246 136930053 -40044087 - L1MA3 LINE L1 -5 6300 5485 1248 253 58 0 chrX 136930528 136930840 -40043300 - ERVL LTR ERVL -368 5396 5067 405 0 0 0 chrX 136930900 136930945 -40043195 + (TG)n Simple_repeat Simple_repeat 2 46 0 233 203 16 31 chrX 136930993 136931057 -40043083 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 1755 155 13 26 chrX 136931189 136931493 -40042647 - AluSx SINE Alu -12 300 1 7654 31 0 5 chrX 136931561 136933066 -40041074 - L1PA4 LINE L1 0 6155 4654 3012 31 0 0 chrX 136933066 136933422 -40040718 + L1PA4 LINE L1 4304 4659 -1487 1472 241 30 60 chrX 136933422 136933924 -40040216 - ERVL LTR ERVL -801 4963 4477 1671 249 47 23 chrX 136934155 136934625 -40039515 + MLT1E2 LTR MaLR 146 626 0 365 304 9 0 chrX 136934626 136934738 -40039402 + ERVL LTR ERVL 3607 3719 -2045 581 288 85 67 chrX 136934844 136935174 -40038966 + L1M4 LINE L1 16 351 -6191 913 171 0 0 chrX 136935195 136935335 -40038805 - AluJb SINE Alu -27 285 146 250 222 0 48 chrX 136935460 136935523 -40038617 - L1 LINE L1 -2010 4136 4077 638 13 0 13 chrX 136935751 136935828 -40038312 - L1P2 LINE L1 -473 5681 5606 736 42 10 0 chrX 136935829 136935925 -40038215 + L1PA4 LINE L1 6059 6155 0 945 239 107 84 chrX 136935929 136936281 -40037859 + L1M4 LINE L1 4851 5193 -1451 2305 110 7 0 chrX 136936281 136936589 -40037551 + AluSq SINE Alu 1 310 -3 945 239 107 84 chrX 136936589 136936998 -40037142 + L1M4 LINE L1 5193 5637 -1007 2198 89 14 0 chrX 136936998 136937289 -40036851 + AluSp SINE Alu 2 296 -17 945 239 107 84 chrX 136937289 136937397 -40036743 + L1M4 LINE L1 5637 5741 -903 215 203 14 58 chrX 136937397 136937466 -40036674 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 299 266 39 3 chrX 136937472 136937622 -40036518 + L1M4 LINE L1 5735 5886 -758 400 230 80 89 chrX 136937683 136938044 -40036096 + L1ME LINE L1 5039 5396 -750 * 408 258 67 48 chrX 136938024 136938069 -40036071 + L1ME LINE L1 5329 5372 -792 2050 123 3 7 chrX 136938069 136938378 -40035762 + AluJb SINE Alu 5 312 0 408 258 67 48 chrX 136938378 136938541 -40035599 + L1ME LINE L1 5372 5541 -623 665 323 5 5 chrX 136939649 136939866 -40034274 - ERVL LTR ERVL -5143 621 405 573 96 12 0 chrX 136940009 136940092 -40034048 + AluJ/FLAM SINE Alu 5 88 -224 8237 51 9 8 chrX 136940145 136941151 -40032989 + LTR13 LTR ERVK 1 1007 0 1973 98 15 174 chrX 136941242 136941651 -40032489 - LTR14B LTR ERVK 0 608 1 527 59 44 222 chrX 136941654 136941789 -40032351 - HERVK14 LTR ERVK 0 5945 5835 320 220 0 18 chrX 136941789 136941864 -40032276 - MER41C LTR ERV1 -493 61 1 9266 51 43 2 chrX 136941864 136943411 -40030729 - HERVK14 LTR ERVK -186 5759 4081 194 57 57 0 chrX 136943425 136943460 -40030680 + (TTTAA)n Simple_repeat Simple_repeat 4 40 0 3126 37 5 3 chrX 136943460 136943827 -40030313 - L1PA4 LINE L1 -8 6147 5777 1439 241 75 39 chrX 136944006 136944328 -40029812 + L1M4 LINE L1 3107 3460 -2686 2220 68 7 44 chrX 136944328 136944653 -40029487 + AluSp SINE Alu 1 314 0 1439 241 75 39 chrX 136944653 136944890 -40029250 + L1M4 LINE L1 3460 3687 -2459 316 169 135 61 chrX 136944895 136945043 -40029097 + LTR41 LTR ERVL 20 178 -595 369 366 13 13 chrX 136945188 136945420 -40028720 + LTR41 LTR ERVL 392 623 -150 345 275 51 22 chrX 136946259 136946449 -40027691 - L1MC/D LINE L1 -637 5541 5351 1375 123 44 5 chrX 136946450 136946654 -40027486 - AluJb SINE Alu -100 212 1 311 237 75 111 chrX 136946676 136947047 -40027093 - L1MC/D LINE L1 -750 5396 5039 277 107 36 24 chrX 136947254 136947338 -40026802 + (TA)n Simple_repeat Simple_repeat 1 85 0 310 324 18 6 chrX 136947375 136947545 -40026595 - L1M4 LINE L1 -935 5211 5040 592 269 56 51 chrX 136947631 136948022 -40026118 - L1M4 LINE L1 -1233 4913 4521 2853 112 42 2 chrX 136948057 136948467 -40025673 - Harlequin LTR ERV1 -6470 426 1 986 244 5 0 chrX 136948467 136948680 -40025460 - LTR2 LTR ERV1 0 449 236 745 166 29 7 chrX 136948784 136948923 -40025217 + AluSg/x SINE Alu 154 295 -15 1321 165 110 4 chrX 136949014 136949448 -40024692 - AluJb SINE Alu 0 467 7 1933 117 7 27 chrX 136949529 136949827 -40024313 - AluSx SINE Alu -20 292 1 1069 143 54 58 chrX 136949909 136950083 -40024057 - AluJb SINE Alu -2 310 136 321 26 0 0 chrX 136950083 136950121 -40024019 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1069 143 54 58 chrX 136950121 136950170 -40023970 - AluJb SINE Alu -176 136 88 491 351 4 9 chrX 136950419 136950644 -40023496 + LTR41 LTR ERVL 392 615 -158 528 234 29 48 chrX 136951513 136951683 -40022457 - L1ME LINE L1 -623 5541 5373 343 180 0 0 chrX 136951688 136951749 -40022391 - Alu SINE Alu -4 298 238 317 252 44 7 chrX 136951785 136951920 -40022220 - L1ME LINE L1 -766 5398 5259 2649 79 60 0 chrX 136952146 136952513 -40021627 - L1PA7 LINE L1 -3 6151 5763 1066 124 0 0 chrX 136952513 136952666 -40021474 + AluSg/x SINE Alu 141 293 -17 1242 259 93 64 chrX 136952671 136953318 -40020822 - L1M4 LINE L1 -1609 4537 3859 246 32 0 0 chrX 136953318 136953349 -40020791 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1242 259 93 64 chrX 136953349 136953542 -40020598 - L1M4 LINE L1 -2287 3859 3673 218 194 30 15 chrX 136953632 136953699 -40020441 + (TA)n Simple_repeat Simple_repeat 1 68 0 257 143 54 0 chrX 136954360 136954416 -40019724 + L2 LINE L2 1951 2009 -1305 2068 120 3 0 chrX 136954484 136954776 -40019364 - AluSq SINE Alu -20 293 1 328 248 51 34 chrX 136955408 136955525 -40018615 + L2 LINE L2 3136 3254 -18 5127 113 23 17 chrX 136957178 136957989 -40016151 - L1MA3 LINE L1 -5 6300 5485 1273 247 58 0 chrX 136958464 136958776 -40015364 - ERVL LTR ERVL -368 5396 5067 423 0 0 0 chrX 136958836 136958883 -40015257 + (TG)n Simple_repeat Simple_repeat 2 48 0 233 203 16 31 chrX 136958931 136958995 -40015145 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 271 216 23 45 chrX 136959012 136959100 -40015040 - MLT2F LTR ERVL -43 620 535 1690 166 13 30 chrX 136959126 136959428 -40014712 - AluJb SINE Alu -15 297 1 7725 27 0 5 chrX 136959496 136960997 -40013143 - L1PA4 LINE L1 -5 6150 4654 3020 33 3 0 chrX 136960997 136961353 -40012787 + L1PA4 LINE L1 4300 4659 -1487 2660 252 26 42 chrX 136961353 136962167 -40011973 - ERVL LTR ERVL -801 4963 4163 1038 300 48 11 chrX 136962168 136962521 -40011619 + MLT1E2 LTR MaLR 259 624 -2 422 248 9 9 chrX 136962524 136962629 -40011511 - ERVL LTR ERVL -2045 3719 3615 1561 297 58 19 chrX 136962639 136963275 -40010865 - ERVL LTR ERVL -2639 3125 2465 1478 148 38 13 chrX 136963275 136963512 -40010628 - AluSx SINE Alu -69 243 1 888 138 7 0 chrX 136963512 136963650 -40010490 - AluSq/x SINE Alu -171 141 3 1197 188 0 59 chrX 136963696 136963984 -40010156 + L1PA16 LINE L1 5893 6163 -3 3016 237 38 7 chrX 136964455 136965168 -40008972 - ERVL LTR ERVL -1306 4458 3724 319 200 221 21 chrX 136965175 136965270 -40008870 + MLT1E3 LTR MaLR 1 114 -510 31 0 0 0 chrX 136965498 136965529 -40008611 + AT_rich Low_complexity Low_complexity 1 31 0 802 145 5 109 chrX 136965529 136965722 -40008418 - AluSg/x SINE Alu -22 290 118 2073 129 7 0 chrX 136965913 136966208 -40007932 + AluSx SINE Alu 1 297 -15 1000 124 17 0 chrX 136966284 136966461 -40007679 + CT-rich Low_complexity Low_complexity 1 180 0 1440 168 98 4 chrX 136966465 136966739 -40007401 - AluJb SINE Alu -6 306 7 1957 117 7 27 chrX 136966821 136967119 -40007021 - AluSx SINE Alu -20 292 1 1073 143 54 58 chrX 136967198 136967372 -40006768 - AluJb SINE Alu -2 310 136 213 39 0 0 chrX 136967372 136967398 -40006742 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1073 143 54 58 chrX 136967398 136967447 -40006693 - AluJb SINE Alu -176 136 88 491 351 4 9 chrX 136967696 136967921 -40006219 + LTR41 LTR ERVL 392 615 -158 278 233 83 33 chrX 136968797 136968917 -40005223 - L1ME LINE L1 -628 5538 5413 315 221 151 0 chrX 137168993 137169079 -39805061 - L1MC4 LINE L1 -1330 6712 6614 1987 135 47 29 chrX 137169084 137169425 -39804715 + MER7A DNA MER2_type 2 346 0 217 317 0 0 chrX 137169425 137169485 -39804655 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 975 171 76 5 chrX 137170875 137171086 -39803054 - L1MD1 LINE L1 -10 6232 6007 2224 106 0 0 chrX 137171665 137172008 -39802132 + AluSx SINE Alu 1 343 0 228 163 0 0 chrX 137172469 137172512 -39801628 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 767 243 129 46 chrX 137173253 137173603 -39800537 - MLT1J2 LTR MaLR -7 443 65 2204 88 122 11 chrX 137173939 137174118 -39800022 + L1MA9 LINE L1 5892 6050 -262 2195 111 20 0 chrX 137174118 137174415 -39799725 + AluSx SINE Alu 1 303 -9 2204 88 122 11 chrX 137174415 137174465 -39799675 + L1MA9 LINE L1 6050 6093 -219 189 0 0 0 chrX 137174465 137174486 -39799654 + (CA)n Simple_repeat Simple_repeat 2 22 0 2204 88 122 11 chrX 137174486 137174631 -39799509 + L1MA9 LINE L1 6093 6309 -3 779 225 105 9 chrX 137175123 137175448 -39798692 + L1ME4a LINE L1 5748 6103 -18 404 305 89 16 chrX 137175802 137175992 -39798148 + MIR SINE MIR 4 207 -55 2764 84 0 3 chrX 137177516 137177872 -39796268 - THE1A LTR MaLR 0 355 1 682 153 244 0 chrX 137178275 137178406 -39795734 - AluJo SINE Alu -2 300 138 2189 139 14 6 chrX 137178406 137178758 -39795382 - THE1A LTR MaLR 0 355 1 11920 90 7 2 chrX 137178758 137180331 -39793809 - THE1A-int LTR MaLR 0 1580 1 2299 122 11 8 chrX 137180331 137180685 -39793455 - THE1A LTR MaLR 0 355 1 1304 168 24 8 chrX 137180685 137180935 -39793205 - THE1A LTR MaLR -98 257 4 811 154 0 29 chrX 137180947 137181083 -39793057 - AluJo SINE Alu -170 132 1 274 342 42 8 chrX 137181487 137181607 -39792533 + MIR SINE MIR 28 151 -111 695 279 157 9 chrX 137182970 137183314 -39790826 - MLT1J1 LTR MaLR -7 439 45 337 314 105 0 chrX 137183381 137183658 -39790482 - L1ME4a LINE L1 -201 5920 5615 7258 198 41 48 chrX 137183901 137184452 -39789688 + L1MC4a LINE L1 5759 6313 -1495 1377 242 57 64 chrX 137184452 137184998 -39789142 + MLT1F LTR MaLR 1 542 0 7258 198 41 48 chrX 137184998 137186478 -39787662 + L1MC4a LINE L1 6313 7775 -33 360 253 45 109 chrX 137187237 137187417 -39786723 - HAL1b LINE L1 -36 1312 1147 983 8 0 25 chrX 137187417 137187537 -39786603 + L1PA8 LINE L1 6055 6171 -1 360 253 45 109 chrX 137187537 137187577 -39786563 - HAL1b LINE L1 -201 1147 1106 311 265 8 34 chrX 137187600 137187717 -39786423 - HAL1b LINE L1 -332 1016 903 1365 255 61 49 chrX 137187825 137188059 -39786081 - HAL1b LINE L1 -501 847 617 2404 78 0 3 chrX 137188059 137188355 -39785785 - AluSc SINE Alu -14 295 1 1365 255 61 49 chrX 137188355 137188747 -39785393 - HAL1b LINE L1 -731 617 214 3090 228 271 59 chrX 137189722 137191125 -39783015 + L2 LINE L2 961 2660 -654 635 162 43 35 chrX 137191133 137191341 -39782799 - MLT1C LTR MaLR -212 255 3 219 211 0 0 chrX 137194895 137194933 -39779207 + (CCG)n Simple_repeat Simple_repeat 2 39 0 7590 32 0 0 chrX 137195071 137196546 -39777594 - L1PA3 LINE L1 0 6155 4682 837 298 63 0 chrX 137196754 137197001 -39777139 - L2 LINE L2 -331 2982 2723 2292 182 12 157 chrX 137197030 137197889 -39776251 - L1PA13 LINE L1 -4449 3135 2384 4254 178 24 22 chrX 137197891 137199145 -39774995 - L1PA13 LINE L1 -6268 1313 14 1521 239 2 22 chrX 137199152 137199567 -39774573 - L1M4c LINE L1 -4559 1825 1419 280 153 0 17 chrX 137199582 137199641 -39774499 + L1MB8 LINE L1 4651 4708 -1438 503 184 10 0 chrX 137199660 137199758 -39774382 + L1MB8 LINE L1 5439 5537 -647 1569 145 31 43 chrX 137199765 137200082 -39774058 + L1MB8 LINE L1 5854 6168 -10 212 0 36 0 chrX 137200082 137200110 -39774030 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 41348 48 3 1 chrX 137200117 137206243 -39767897 - L1PA4 LINE L1 -18 6137 1 13628 32 3 0 chrX 137206248 137207985 -39766155 + L1P LINE L1 2692 4433 -1713 412 282 108 36 chrX 137208510 137208897 -39765243 + L1ME LINE L1 5409 5823 -298 40 21 0 0 chrX 137208928 137208975 -39765165 + AT_rich Low_complexity Low_complexity 1 47 0 347 182 0 0 chrX 137209512 137209567 -39764573 + Tigger5 DNA MER2_type 1 55 -2268 * 406 151 14 14 chrX 137209536 137209609 -39764531 + Tigger5 DNA MER2_type 2251 2323 0 375 293 61 55 chrX 137209745 137209935 -39764205 + L1M4c LINE L1 46 233 -2008 234 0 0 0 chrX 137209935 137209961 -39764179 + (TA)n Simple_repeat Simple_repeat 1 26 0 375 293 61 55 chrX 137209961 137210250 -39763890 + L1M4c LINE L1 233 1406 -835 522 212 15 121 chrX 137210658 137210922 -39763218 + MER106B DNA MER1_type 1 1059 0 634 227 140 74 chrX 137210960 137211499 -39762641 + L1MC5 LINE L1 6488 7070 -891 3526 230 41 29 chrX 137211546 137212500 -39761640 + L1M4 LINE L1 5 969 -5573 530 171 0 0 chrX 137212509 137212614 -39761526 + L1MB7 LINE L1 6073 6177 -7 520 205 24 42 chrX 137212736 137212902 -39761238 + L1MC5 LINE L1 7368 7530 -431 270 174 110 55 chrX 137214160 137214269 -39759871 - L2 LINE L2 -5 3308 3194 225 196 39 0 chrX 137214692 137214743 -39759397 + L2 LINE L2 3218 3270 -2 267 320 21 10 chrX 137215349 137215446 -39758694 + L2 LINE L2 3174 3271 -1 339 257 35 18 chrX 137215480 137215593 -39758547 + MIR SINE MIR 30 144 -64 243 345 0 12 chrX 137216484 137216568 -39757572 - MIR3 SINE MIR -21 187 105 252 282 19 10 chrX 137217067 137217170 -39756970 + L1M4 LINE L1 5476 5579 -599 231 114 0 0 chrX 137217743 137217778 -39756362 + (CCA)n Simple_repeat Simple_repeat 1 35 0 931 186 29 6 chrX 137217808 137217980 -39756160 + MER3 DNA MER1_type 7 182 -27 549 213 52 29 chrX 137217964 137218100 -39756040 + MER3 DNA MER1_type 71 209 0 * 22 0 0 0 chrX 137218477 137218499 -39755641 + AT_rich Low_complexity Low_complexity 1 22 0 187 227 106 30 chrX 137220530 137220596 -39753544 - L2 LINE L2 -161 3111 3041 216 221 184 142 chrX 137220614 137220881 -39753259 + L2 LINE L2 2995 3272 0 426 252 87 9 chrX 137221125 137221240 -39752900 - MER5A DNA MER1_type 0 189 66 2234 177 2 35 chrX 137221240 137221669 -39752471 - L1MA4 LINE L1 -6 6294 5880 529 272 22 33 chrX 137221799 137221979 -39752161 + MER5B DNA MER1_type 1 178 0 549 235 71 37 chrX 137222297 137222534 -39751606 + MIR SINE MIR 8 254 -8 662 299 46 63 chrX 137222726 137223140 -39751000 - L3 LINE CR1 -8 1569 1163 438 322 125 40 chrX 137223146 137223450 -39750690 - LTR16A LTR ERVL 0 450 121 2104 329 57 31 chrX 137223907 137224160 -39749980 - HERV16 LTR ERVL -449 5036 4791 1679 160 79 97 chrX 137224160 137224553 -39749587 - MLT1B LTR MaLR -4 386 1 2104 329 57 31 chrX 137224553 137225160 -39748980 - HERV16 LTR ERVL -694 4791 4202 2959 86 6 0 chrX 137225160 137225521 -39748619 - THE1B LTR MaLR -1 363 1 2104 329 57 31 chrX 137225521 137226030 -39748110 - HERV16 LTR ERVL -1283 4202 3606 1899 328 43 22 chrX 137226060 137226996 -39747144 - HERV16 LTR ERVL -1926 3070 2600 405 0 0 0 chrX 137226996 137227041 -39747099 + (CA)n Simple_repeat Simple_repeat 2 46 0 1899 328 43 22 chrX 137227041 137227179 -39746961 - HERV16 LTR ERVL -2396 2600 2466 19942 172 45 3 chrX 137227181 137228893 -39745247 + L1MA2 LINE L1 19 1659 -5906 204 40 0 0 chrX 137228893 137228918 -39745222 + (GA)n Simple_repeat Simple_repeat 2 26 0 19942 172 45 3 chrX 137228918 137233544 -39740596 + L1MA2 LINE L1 1659 6619 -946 5767 87 9 1 chrX 137233544 137234295 -39739845 + L1MA2 LINE L1 6960 7723 0 2776 310 36 15 chrX 137234355 137236096 -39738044 - HERV16 LTR ERVL -2514 2482 613 585 274 32 13 chrX 137236181 137236338 -39737802 - HERV16 LTR ERVL -4834 162 3 676 247 82 121 chrX 137236360 137236740 -39737400 - LTR16A LTR ERVL -21 429 65 227 346 31 37 chrX 137236765 137236927 -39737213 - L3 LINE CR1 -414 1163 1003 184 263 66 66 chrX 137237039 137237115 -39737025 + MIR SINE MIR 16 91 -117 422 204 92 28 chrX 137237169 137237311 -39736829 + MIR SINE MIR 97 247 -15 300 195 91 13 chrX 137237280 137237357 -39736783 + L2 LINE L2 3231 3313 0 * 395 257 134 31 chrX 137237417 137237613 -39736527 - MIR SINE MIR -48 214 4 213 132 0 0 chrX 137238767 137238805 -39735335 + (CAT)n Simple_repeat Simple_repeat 1 38 0 463 292 42 87 chrX 137238972 137239260 -39734880 + L2 LINE L2 2472 2746 -568 813 118 42 0 chrX 137239265 137239384 -39734756 - AluSg/x SINE Alu -7 303 180 641 101 0 0 chrX 137239385 137239474 -39734666 - HERVL LTR ERVL 0 5654 5566 26381 60 2 1 chrX 137239574 137242750 -39731390 + HERVL LTR ERVL 1926 5104 -550 727 152 0 36 chrX 137242861 137242961 -39731179 + L1 LINE L1 4126 4221 -1925 2171 175 91 30 chrX 137242961 137243423 -39730717 + LTR2B LTR ERV1 1 490 0 727 152 0 36 chrX 137243423 137243460 -39730680 + L1 LINE L1 4221 4258 -1888 * 3692 139 16 23 chrX 137243456 137244073 -39730067 + L1P LINE L1 3611 4223 -1923 1246 158 0 0 chrX 137244073 137244256 -39729884 + AluSg/x SINE Alu 113 295 -17 2013 212 54 88 chrX 137244257 137244984 -39729156 + L2 LINE L2 2338 3039 -274 286 348 119 20 chrX 137246612 137246957 -39727183 + L2 LINE L2 2287 2665 -649 358 343 29 15 chrX 137247028 137247165 -39726975 - MER91C DNA MER1_type 0 140 2 240 332 106 25 chrX 137247169 137247404 -39726736 + L2 LINE L2 2724 2977 -337 198 0 0 0 chrX 137248060 137248082 -39726058 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chrX 137249458 137249478 -39724662 + (CGGG)n Simple_repeat Simple_repeat 3 22 0 304 228 90 129 chrX 137249888 137250121 -39724019 + L1M2 LINE L1 1157 1380 -5469 279 0 0 0 chrX 137251205 137251236 -39722904 + (CA)n Simple_repeat Simple_repeat 2 32 0 337 249 121 12 chrX 137251612 137251777 -39722363 + L1ME4a LINE L1 5845 6027 -94 1396 151 24 12 chrX 137252096 137252348 -39721792 + L1ME4a LINE L1 4662 4916 -1230 449 256 174 8 chrX 137252348 137252590 -39721550 + L1ME4a LINE L1 5595 5876 -245 1219 93 31 46 chrX 137252614 137252747 -39721393 + L1MD1 LINE L1 6047 6178 -64 2312 95 10 0 chrX 137252747 137253051 -39721089 - AluSx SINE Alu -5 307 1 1219 93 31 46 chrX 137253051 137253111 -39721029 + L1MD1 LINE L1 6178 6237 -5 305 330 112 56 chrX 137253374 137253607 -39720533 + L2 LINE L2 3027 3272 0 356 151 11 32 chrX 137253977 137254070 -39720070 + CT-rich Low_complexity Low_complexity 4 94 0 * 477 97 0 0 chrX 137254058 137254130 -39720010 + (TCTCC)n Simple_repeat Simple_repeat 5 76 0 1737 124 0 19 chrX 137254149 137254407 -39719733 - AluSx SINE Alu -16 296 44 1342 279 118 21 chrX 137254735 137255218 -39718922 + MLT1K LTR MaLR 58 587 -1 1951 150 0 32 chrX 137255579 137255893 -39718247 + AluJb SINE Alu 1 304 -8 301 290 47 32 chrX 137256630 137256819 -39717321 - MIR SINE MIR -44 218 30 2483 143 24 12 chrX 137257056 137257482 -39716658 - L1MB8 LINE L1 -2 6176 5746 304 286 59 8 chrX 137257671 137257790 -39716350 - L1MB8 LINE L1 -678 5443 5319 426 297 61 72 chrX 137258624 137259015 -39715125 + HAL1 LINE L1 485 871 -1636 1671 167 57 43 chrX 137259017 137259389 -39714751 + MLT2C1 LTR ERVL 1 377 -20 736 284 79 79 chrX 137259646 137260008 -39714132 + L2 LINE L2 2858 3222 -91 647 173 0 0 chrX 137260008 137260112 -39714028 - U13 snRNA snRNA 0 104 1 736 284 79 79 chrX 137260112 137260203 -39713937 + L2 LINE L2 3221 3311 -2 337 288 42 57 chrX 137260208 137260420 -39713720 + HAL1 LINE L1 904 1112 -1395 359 323 0 0 chrX 137260423 137260519 -39713621 + MER63A DNA MER1_type 115 210 0 1142 282 92 11 chrX 137260537 137260916 -39713224 + LTR16A LTR ERVL 1 410 -40 239 264 40 54 chrX 137260929 137261077 -39713063 - L2 LINE L2 -1921 1393 1248 337 224 44 150 chrX 137261082 137261176 -39712964 + HAL1 LINE L1 1180 1282 -1225 2058 112 7 0 chrX 137261176 137261454 -39712686 + AluSx SINE Alu 1 280 -32 233 29 29 0 chrX 137261455 137261489 -39712651 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 337 224 44 150 chrX 137261489 137261732 -39712408 + HAL1 LINE L1 1281 1483 -1024 * 7055 162 10 39 chrX 137261729 137262241 -39711899 + L1PA16 LINE L1 3901 4426 -1740 549 95 0 0 chrX 137262241 137262325 -39711815 + L1PB1 LINE L1 6067 6150 -1 7055 162 10 39 chrX 137262325 137262751 -39711389 + L1PA16 LINE L1 4426 4863 -1303 2102 111 4 4 chrX 137262751 137263035 -39711105 + AluSx SINE Alu 1 284 -28 187 43 0 0 chrX 137263035 137263058 -39711082 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7055 162 10 39 chrX 137263058 137264446 -39709694 + L1PA16 LINE L1 4863 6162 -4 883 288 119 13 chrX 137264447 137264610 -39709530 + HAL1 LINE L1 1485 1629 -878 198 0 0 0 chrX 137264610 137264632 -39709508 + (TTA)n Simple_repeat Simple_repeat 1 22 0 883 288 119 13 chrX 137264632 137264853 -39709287 + HAL1 LINE L1 1629 1910 -597 2112 143 51 105 chrX 137266193 137266401 -39707739 - L1MA9 LINE L1 -27 6285 6067 2151 111 3 0 chrX 137266401 137266689 -39707451 + AluSq SINE Alu 1 289 -24 2112 143 51 105 chrX 137266689 137267013 -39707127 - L1MA9 LINE L1 -245 6067 5782 396 86 0 106 chrX 137267036 137267234 -39706906 + (CATATA)n Simple_repeat Simple_repeat 2 178 0 381 132 0 79 chrX 137267188 137267377 -39706763 + (TA)n Simple_repeat Simple_repeat 1 174 0 * 2936 129 38 29 chrX 137267392 137268095 -39706045 - L1MA9 LINE L1 -549 5742 5023 880 116 34 0 chrX 137268095 137268119 -39706021 - L1MA6 LINE L1 -2 6298 6276 288 77 0 0 chrX 137268119 137268158 -39705982 + (TA)n Simple_repeat Simple_repeat 2 40 0 880 116 34 0 chrX 137268158 137268279 -39705861 - L1MA6 LINE L1 -24 6276 6148 2936 129 38 29 chrX 137268279 137268485 -39705655 - L1MA9 LINE L1 -1268 5023 4820 965 279 56 0 chrX 137268682 137269053 -39705087 + L2 LINE L2 2690 3075 -238 326 255 0 66 chrX 137269372 137269478 -39704662 - MER58C DNA MER1_type 0 215 117 264 325 26 0 chrX 137269635 137269752 -39704388 + L1ME LINE L1 5605 5724 -397 332 204 51 31 chrX 137269890 137269988 -39704152 + L1MC4 LINE L1 6602 6701 -1341 24 32 0 0 chrX 137270854 137270885 -39703255 + AT_rich Low_complexity Low_complexity 1 31 0 344 296 15 15 chrX 137270895 137271030 -39703110 - L1ME4a LINE L1 -20 6101 5967 5821 100 89 14 chrX 137271234 137272163 -39701977 - HSMAR2 DNA Mariner -1 1301 303 2327 97 0 0 chrX 137272163 137272463 -39701677 - AluSx SINE Alu -12 300 1 367 310 21 28 chrX 137273397 137273539 -39700601 + L3 LINE CR1 651 791 -786 451 218 38 38 chrX 137273773 137273906 -39700234 - L2 LINE L2 -1 3312 3180 844 204 54 5 chrX 137273936 137274122 -39700018 - MIR SINE MIR -5 257 63 489 312 0 14 chrX 137274239 137274380 -39699760 - L2 LINE L2 0 3272 3134 274 279 0 0 chrX 137274976 137275044 -39699096 + L3 LINE CR1 807 874 -703 1038 242 144 21 chrX 137275045 137275475 -39698665 + MLT1D LTR MaLR 1 390 0 896 319 63 33 chrX 137275511 137275557 -39698583 + L3 LINE CR1 937 980 -597 1958 149 0 10 chrX 137275557 137275865 -39698275 + AluSx SINE Alu 1 305 -7 896 319 63 33 chrX 137275865 137276213 -39697927 + L3 LINE CR1 980 1343 -234 434 315 0 8 chrX 137276300 137276427 -39697713 + MIR3 SINE MIR 40 165 -43 2319 97 0 0 chrX 137276547 137276846 -39697294 - AluSq SINE Alu -14 299 1 3228 156 21 9 chrX 137276932 137277429 -39696711 + MLT2B3 LTR ERVL 18 523 -31 216 0 0 0 chrX 137277429 137277453 -39696687 + (TC)n Simple_repeat Simple_repeat 2 25 0 3228 156 21 9 chrX 137277453 137277486 -39696654 + MLT2B3 LTR ERVL 523 554 0 443 314 25 0 chrX 137277488 137277624 -39696516 - MIR SINE MIR -63 145 1 1808 10 0 0 chrX 137278300 137278497 -39695643 + BC200 scRNA scRNA 1 197 -3 1421 66 0 6 chrX 137278512 137278693 -39695447 + AluY SINE Alu 119 298 -13 214 167 0 0 chrX 137279222 137279258 -39694882 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 308 286 55 22 chrX 137279953 137280044 -39694096 - L2 LINE L2 -1 3312 3219 488 291 86 0 chrX 137281033 137281253 -39692887 + LTR33A LTR ERVL 226 464 -59 301 223 100 46 chrX 137281657 137281787 -39692353 + MIR SINE MIR 95 231 -31 929 206 116 52 chrX 137281887 137282232 -39691908 - L1MC4a LINE L1 -32 7776 7410 862 261 95 0 chrX 137282301 137282523 -39691617 + MIR SINE MIR 15 257 -5 222 299 45 0 chrX 137283758 137283825 -39690315 + L2 LINE L2 3234 3303 -10 501 274 65 8 chrX 137286993 137287117 -39687023 + L2 LINE L2 3142 3272 0 320 339 36 0 chrX 137292799 137292911 -39681229 + L2 LINE L2 3149 3264 -8 192 97 0 0 chrX 137293664 137293695 -39680445 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chrX 137298603 137298625 -39675515 + AT_rich Low_complexity Low_complexity 1 22 0 667 200 100 0 chrX 137299955 137300105 -39674035 - MIR SINE MIR -40 222 58 52 0 0 0 chrX 137300546 137300598 -39673542 + AT_rich Low_complexity Low_complexity 1 52 0 333 0 0 0 chrX 137300598 137300635 -39673505 + (TA)n Simple_repeat Simple_repeat 1 37 0 849 111 8 0 chrX 137300639 137300756 -39673384 - FLAM_C SINE Alu -15 118 1 249 57 0 0 chrX 137300913 137300948 -39673192 + (TC)n Simple_repeat Simple_repeat 1 35 0 258 314 38 9 chrX 137302352 137302457 -39671683 - MIR3 SINE MIR -30 178 71 18141 34 1 1 chrX 137302968 137305934 -39668206 + L1PA4 LINE L1 3187 6153 -2 1780 237 51 42 chrX 137305938 137306600 -39667540 + L1MC/D LINE L1 4639 5306 -840 447 145 7 0 chrX 137306604 137306688 -39667452 + L1MC/D LINE L1 5513 5598 -566 405 355 105 20 chrX 137308714 137309058 -39665082 - L2 LINE L2 -2 3270 2898 712 309 53 8 chrX 137309477 137309723 -39664417 + MIR SINE MIR 6 262 0 262 344 62 0 chrX 137309744 137309872 -39664268 - L2 LINE L2 -1017 2297 2162 235 118 39 78 chrX 137309880 137309931 -39664209 + L2 LINE L2 3214 3262 -10 431 240 30 105 chrX 137310480 137310680 -39663460 - MIR SINE MIR -64 198 14 2069 161 12 3 chrX 137310686 137311027 -39663113 - MER2 DNA MER2_type 0 344 1 2169 91 7 27 chrX 137311303 137311601 -39662539 + AluSx SINE Alu 1 292 -20 197 116 0 47 chrX 137311756 137311799 -39662341 + (TTTCC)n Simple_repeat Simple_repeat 3 43 0 311 217 0 31 chrX 137311946 137312006 -39662134 + (TA)n Simple_repeat Simple_repeat 2 62 -64 1998 135 47 29 chrX 137312006 137312347 -39661793 - MER7A DNA MER2_type 0 346 2 311 217 0 31 chrX 137312347 137312415 -39661725 + (TA)n Simple_repeat Simple_repeat 62 126 0 280 206 22 43 chrX 137312415 137312507 -39661633 - L1MC4 LINE L1 -1339 6703 6614 238 182 0 23 chrX 137312526 137312570 -39661570 + GA-rich Low_complexity Low_complexity 3 45 0 1353 264 45 63 chrX 137313967 137314520 -39659620 + L2 LINE L2 2777 3309 -4 445 320 34 11 chrX 137315431 137315609 -39658531 - MIR SINE MIR -72 190 9 420 298 119 12 chrX 137317651 137317819 -39656321 - MIR SINE MIR -69 193 8 185 241 148 0 chrX 137320051 137320105 -39654035 + L2 LINE L2 3207 3268 -4 225 0 0 0 chrX 137320585 137320610 -39653530 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 422 328 51 35 chrX 137320909 137321165 -39652975 - LTR16C LTR ERVL -74 417 158 269 340 25 0 chrX 137321770 137321970 -39652170 + L1ME3A LINE L1 2210 2414 -3732 3096 93 7 5 chrX 137322153 137322595 -39651545 - L1PA14 LINE L1 -1 6160 5718 1936 239 86 35 chrX 137322772 137323495 -39650645 + L1ME3A LINE L1 4181 4940 -1206 526 230 48 12 chrX 137323540 137323705 -39650435 + L1ME3A LINE L1 5079 5249 -897 * 2074 233 88 18 chrX 137323703 137324308 -39649832 + L1ME3A LINE L1 5517 6163 -7 3113 108 89 4 chrX 137325599 137326070 -39648070 - MER9 LTR ERVK 0 511 1 837 186 35 23 chrX 137327976 137328142 -39645998 + MER5A DNA MER1_type 16 184 0 1914 170 0 13 chrX 137328142 137328448 -39645692 + AluJb SINE Alu 1 302 -10 1115 172 10 19 chrX 137328755 137328964 -39645176 - MER3 DNA MER1_type -1 208 2 1912 56 0 0 chrX 137329834 137330068 -39644072 + AluY SINE Alu 69 302 -9 21 0 0 0 chrX 137330075 137330096 -39644044 + AT_rich Low_complexity Low_complexity 1 21 0 2595 245 97 77 chrX 137333993 137334924 -39639216 + MER45C DNA AcHobo 5 953 0 363 303 86 19 chrX 137334997 137335159 -39638981 - MER5A DNA MER1_type -7 182 10 484 296 141 19 chrX 137335169 137335382 -39638758 + MIR SINE MIR 14 252 -10 2051 75 86 0 chrX 137335507 137335775 -39638365 + AluSc SINE Alu 1 291 -18 218 214 95 0 chrX 137335852 137335894 -39638246 + L2 LINE L2 3208 3253 -19 203 60 80 0 chrX 137339083 137339133 -39635007 + (TA)n Simple_repeat Simple_repeat 1 54 0 1963 131 0 38 chrX 137339916 137340230 -39633910 + AluSx SINE Alu 1 302 -10 365 312 75 45 chrX 137340373 137340572 -39633568 + MIR3 SINE MIR 3 207 -1 183 320 0 0 chrX 137340580 137340630 -39633510 - L2 LINE L2 0 3272 3223 22 0 0 0 chrX 137340658 137340680 -39633460 + AT_rich Low_complexity Low_complexity 1 22 0 188 246 70 35 chrX 137340706 137340763 -39633377 + L2 LINE L2 3210 3268 -4 473 241 113 0 chrX 137341670 137341811 -39632329 - MIR3 SINE MIR -9 199 43 219 227 0 0 chrX 137342053 137342097 -39632043 + L2 LINE L2 3226 3269 -3 2045 121 4 0 chrX 137342900 137343172 -39630968 + AluSx SINE Alu 1 273 -39 617 118 0 10 chrX 137343172 137343274 -39630866 + (GGAA)n Simple_repeat Simple_repeat 3 103 0 1662 165 0 0 chrX 137343752 137344007 -39630133 + AluJb SINE Alu 41 295 -17 418 81 0 40 chrX 137344007 137344081 -39630059 + (GGGA)n Simple_repeat Simple_repeat 3 73 0 778 229 69 78 chrX 137344762 137344782 -39629358 - MER93b LTR ERV1 0 403 384 2946 112 20 0 chrX 137344782 137345236 -39628904 + L1MA2 LINE L1 5842 6304 0 778 229 69 78 chrX 137345236 137345560 -39628580 - MER93b LTR ERV1 -19 384 18 2222 107 0 0 chrX 137345566 137345857 -39628283 - AluSx SINE Alu -16 296 6 725 246 6 12 chrX 137345873 137346044 -39628096 - MER63A DNA MER1_type -40 170 1 234 0 0 0 chrX 137346445 137346471 -39627669 + (A)n Simple_repeat Simple_repeat 1 26 0 644 329 88 8 chrX 137346791 137347205 -39626935 - L1ME3A LINE L1 -221 5945 5485 1918 146 3 17 chrX 137347616 137347911 -39626229 - AluJo SINE Alu -21 291 1 4756 48 3 0 chrX 137348786 137349374 -39624766 - L1PA7 LINE L1 -2 6152 5563 2559 142 29 0 chrX 137349541 137349957 -39624183 + MSTA LTR MaLR 1 428 0 21 82 0 0 chrX 137351424 137351473 -39622667 + AT_rich Low_complexity Low_complexity 1 49 0 3624 240 63 19 chrX 137353967 137353996 -39620144 - L1ME3A LINE L1 -1019 5127 5101 1418 97 10 0 chrX 137353996 137354202 -39619938 - L1PB1 LINE L1 -8 6143 5936 3624 240 63 19 chrX 137354202 137355401 -39618739 - L1ME3A LINE L1 -1045 5101 3846 1179 189 131 12 chrX 137355411 137355755 -39618385 - L1ME3A LINE L1 -3118 3028 2644 201 94 0 0 chrX 137356301 137356333 -39617807 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 78 0 0 chrX 137356533 137356584 -39617556 + AT_rich Low_complexity Low_complexity 1 51 0 256 198 0 0 chrX 137357324 137357378 -39616762 + L2 LINE L2 3217 3311 -2 1761 183 68 86 chrX 137359199 137359624 -39614516 + Charlie1b DNA MER1_type 5 421 -2340 2552 117 3 5 chrX 137359624 137360000 -39614140 + L1PA16 LINE L1 5783 6157 -9 1761 183 68 86 chrX 137360000 137360100 -39614040 + Charlie1b DNA MER1_type 421 521 -2 294 303 9 28 chrX 137360113 137360222 -39613918 + MIR SINE MIR 86 192 -70 1569 84 5 0 chrX 137360363 137360565 -39613575 - AluSp SINE Alu -6 307 105 286 288 18 45 chrX 137361556 137361667 -39612473 + MIR3 SINE MIR 60 167 -41 266 354 39 89 chrX 137361837 137362094 -39612046 + L2 LINE L2 3028 3271 -1 196 267 50 148 chrX 137362189 137362249 -39611891 + L2 LINE L2 3151 3199 -73 904 211 11 5 chrX 137362249 137362434 -39611706 - MER5A DNA MER1_type 0 189 4 196 267 50 148 chrX 137362434 137362474 -39611666 + L2 LINE L2 3199 3241 -31 231 36 0 0 chrX 137364102 137364130 -39610010 + (CA)n Simple_repeat Simple_repeat 1 28 0 1702 155 4 0 chrX 137364885 137364978 -39609162 + AluJb SINE Alu 23 114 -198 189 0 0 0 chrX 137364978 137364999 -39609141 + (CTA)n Simple_repeat Simple_repeat 1 21 0 1702 155 4 0 chrX 137364999 137365176 -39608964 + AluJb SINE Alu 114 294 -18 26 0 0 0 chrX 137366702 137366728 -39607412 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 137367277 137367299 -39606841 + AT_rich Low_complexity Low_complexity 1 22 0 691 233 83 22 chrX 137367346 137367526 -39606614 + MIR SINE MIR 25 215 -47 1249 129 5 5 chrX 137367932 137368142 -39605998 + L1PA16 LINE L1 5954 6163 -3 1712 46 0 0 chrX 137369364 137369583 -39604557 - L1P LINE L1 -2736 3410 3192 * 3864 32 0 0 chrX 137369578 137370040 -39604100 + L1PA3 LINE L1 3447 3908 -2238 9796 27 0 0 chrX 137370045 137371972 -39602168 + L1PA3 LINE L1 4226 6152 -3 34 0 0 0 chrX 137371972 137372006 -39602134 + AT_rich Low_complexity Low_complexity 1 34 0 6222 232 92 55 chrX 137375433 137375453 -39598687 + HAL1 LINE L1 10 28 -2479 579 90 0 0 chrX 137375453 137375531 -39598609 + MADE1 DNA Mariner 1 78 -2 6222 232 92 55 chrX 137375531 137375885 -39598255 + HAL1 LINE L1 28 367 -2140 3385 164 57 14 chrX 137375885 137376548 -39597592 + L1MB7 LINE L1 5484 6175 -9 6222 232 92 55 chrX 137376548 137378475 -39595665 + HAL1 LINE L1 367 2398 -109 407 368 71 37 chrX 137379168 137379491 -39594649 + L2 LINE L2 2938 3271 -1 2438 75 7 0 chrX 137379788 137380095 -39594045 + AluY SINE Alu 1 309 -2 30 0 0 0 chrX 137380880 137380910 -39593230 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chrX 137381055 137381084 -39593056 + AT_rich Low_complexity Low_complexity 1 29 0 209 33 33 0 chrX 137382239 137382269 -39591871 + (TA)n Simple_repeat Simple_repeat 2 32 0 2103 106 0 3 chrX 137382605 137382889 -39591251 - AluSx SINE Alu -25 287 5 215 186 0 17 chrX 137383093 137383152 -39590988 + (TA)n Simple_repeat Simple_repeat 1 58 0 1179 117 41 0 chrX 137383338 137383535 -39590605 + L1MA9 LINE L1 6107 6311 -1 702 116 0 0 chrX 137383536 137383648 -39590492 + L1MA5 LINE L1 6187 6298 -2 395 284 47 27 chrX 137384920 137385068 -39589072 - MIR SINE MIR -6 256 106 793 249 118 9 chrX 137385200 137385429 -39588711 - MIR SINE MIR -7 255 2 1889 160 3 16 chrX 137385499 137385812 -39588328 + AluJo SINE Alu 3 311 -1 990 167 0 0 chrX 137385917 137386079 -39588061 + FAM SINE Alu 4 165 -10 202 218 182 0 chrX 137386785 137386840 -39587300 - L2 LINE L2 0 3272 3208 538 310 155 5 chrX 137386968 137387181 -39586959 - MIR SINE MIR -7 255 11 534 261 73 123 chrX 137387849 137388190 -39585950 - L2 LINE L2 -23 3249 2926 568 261 138 74 chrX 137388215 137388621 -39585519 - L2 LINE L2 -652 2662 2231 281 188 16 47 chrX 137388688 137388752 -39585388 - L2 LINE L2 0 3272 3211 185 116 0 23 chrX 137388768 137388811 -39585329 + (CAAAAA)n Simple_repeat Simple_repeat 1 42 0 532 264 26 26 chrX 137389769 137389924 -39584216 - MIR SINE MIR -78 184 30 21 36 0 0 chrX 137390074 137390102 -39584038 + AT_rich Low_complexity Low_complexity 1 28 0 366 117 13 52 chrX 137390627 137390704 -39583436 + L1PB4 LINE L1 6081 6154 -2 306 0 0 0 chrX 137390742 137390776 -39583364 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 50 0 0 chrX 137392468 137392508 -39581632 + AT_rich Low_complexity Low_complexity 1 40 0 493 286 0 43 chrX 137392780 137392965 -39581175 - MER5B DNA MER1_type -1 177 1 192 40 0 0 chrX 137394097 137394122 -39580018 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1060 114 18 0 chrX 137394573 137394740 -39579400 + L1MB2 LINE L1 6000 6169 -2 504 277 88 6 chrX 137395090 137395249 -39578891 - MIR SINE MIR -18 244 73 932 142 0 13 chrX 137395570 137395725 -39578415 + L1PB1 LINE L1 5997 6149 -2 266 258 11 21 chrX 137396150 137396232 -39577908 + (TATATG)n Simple_repeat Simple_repeat 2 84 -9 279 0 0 0 chrX 137396232 137396263 -39577877 + (TG)n Simple_repeat Simple_repeat 2 32 0 266 258 11 21 chrX 137396263 137396273 -39577867 + (TATATG)n Simple_repeat Simple_repeat 84 93 0 1099 251 26 7 chrX 137396331 137396602 -39577538 + L1MC4a LINE L1 6617 6892 -916 5526 167 21 27 chrX 137396638 137397755 -39576385 + L1PA16 LINE L1 4176 5300 -866 7554 31 0 1 chrX 137397755 137399126 -39575014 + L1PA4 LINE L1 4783 6152 -3 5526 167 21 27 chrX 137399126 137399980 -39574160 + L1PA16 LINE L1 5300 6157 -9 2586 231 25 79 chrX 137400014 137400505 -39573635 + L1MC4 LINE L1 7074 7485 -557 1871 127 33 0 chrX 137400505 137400781 -39573359 + AluJo SINE Alu 13 297 -15 2586 231 25 79 chrX 137400781 137401291 -39572849 + L1MC4 LINE L1 7485 8021 -21 26 30 0 0 chrX 137401941 137401974 -39572166 + AT_rich Low_complexity Low_complexity 1 33 0 775 196 0 0 chrX 137403332 137403465 -39570675 - FLAM_A SINE Alu 0 133 1 440 350 0 44 chrX 137403877 137404083 -39570057 - MIR SINE MIR -2 260 64 5239 90 11 0 chrX 137404139 137404874 -39569266 + L1PA16 LINE L1 5420 6162 -4 256 290 22 4 chrX 137405160 137405263 -39568877 - MIR SINE MIR -117 91 35 2021 143 11 58 chrX 137405282 137405647 -39568493 - MER7A DNA MER2_type 0 346 1 24 53 0 0 chrX 137405777 137405815 -39568325 + AT_rich Low_complexity Low_complexity 1 38 0 207 173 0 0 chrX 137406828 137406880 -39567260 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 863 281 9 9 chrX 137407110 137407327 -39566813 - MIR SINE MIR 0 262 46 216 0 0 0 chrX 137407519 137407543 -39566597 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 265 213 0 25 chrX 137408271 137408351 -39565789 + (CATA)n Simple_repeat Simple_repeat 2 79 0 302 235 35 12 chrX 137409417 137409502 -39564638 + L2 LINE L2 3227 3313 0 435 238 248 29 chrX 137409568 137409778 -39564362 - MIR SINE MIR 0 262 7 959 326 116 27 chrX 137409810 137410432 -39563708 - L2 LINE L2 -435 2879 2203 566 130 0 11 chrX 137410537 137410629 -39563511 + L1MC1 LINE L1 6243 6333 0 1558 174 78 11 chrX 137411048 137411330 -39562810 + AluJb SINE Alu 1 301 -11 1934 148 0 3 chrX 137411608 137411898 -39562242 + AluSx SINE Alu 1 289 -23 1706 74 37 8 chrX 137411964 137412208 -39561932 - L1PA14 LINE L1 -9 6152 5902 593 87 0 6 chrX 137412208 137412304 -39561836 + L1P LINE L1 5272 5354 -807 248 224 0 0 chrX 137413907 137413956 -39560184 - MIR SINE MIR -95 167 119 2369 148 123 2 chrX 137413965 137414396 -39559744 + MLT1D LTR MaLR 23 505 0 238 242 32 16 chrX 137414575 137414637 -39559503 - Charlie8 DNA MER1_type -1000 1417 1355 735 239 72 68 chrX 137414714 137414978 -39559162 - Charlie8 DNA MER1_type -2152 265 1 338 250 154 0 chrX 137416159 137416263 -39557877 - MIR SINE MIR -30 232 113 318 67 0 0 chrX 137417402 137417447 -39556693 + (TA)n Simple_repeat Simple_repeat 2 46 0 198 0 0 0 chrX 137421489 137421511 -39552629 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 190 335 31 75 chrX 137422574 137422828 -39551312 - L3b LINE CR1 -170 1413 1171 2130 113 0 0 chrX 137424324 137424606 -39549534 + AluSx SINE Alu 1 282 -30 2277 216 42 53 chrX 137424637 137425356 -39548784 + L1MEc LINE L1 2111 2776 -3439 21 82 0 0 chrX 137425650 137425699 -39548441 + AT_rich Low_complexity Low_complexity 1 49 0 1661 202 3 0 chrX 137426307 137426594 -39547546 + AluJo SINE Alu 1 288 -24 2736 131 19 19 chrX 137426976 137427457 -39546683 + L1MB3 LINE L1 5702 6182 -1 259 188 75 38 chrX 137428418 137428498 -39545642 - MIR SINE MIR -50 212 130 * 604 280 133 14 chrX 137428494 137428705 -39545435 + MIR SINE MIR 13 248 -14 211 293 40 10 chrX 137429817 137429916 -39544224 + MIR SINE MIR 30 131 -77 339 177 153 0 chrX 137429930 137430037 -39544103 - L1MB3 LINE L1 0 6180 6062 * 7282 145 15 13 chrX 137430017 137431755 -39542385 - L1MA4 LINE L1 -281 6019 4272 1595 59 0 32 chrX 137431755 137431976 -39542164 - L1PA5 LINE L1 0 6154 5941 7282 145 15 13 chrX 137431976 137432231 -39541909 - L1MA4 LINE L1 -2028 4272 4019 2542 55 0 3 chrX 137432285 137432596 -39541544 - AluY SINE Alu -1 310 1 24 0 0 0 chrX 137433496 137433520 -39540620 + AT_rich Low_complexity Low_complexity 1 24 0 332 156 0 62 chrX 137433743 137433807 -39540333 - L2 LINE L2 0 3313 3254 260 239 209 22 chrX 137433840 137433974 -39540166 + MER103 DNA DNA 1 159 -7 315 324 44 44 chrX 137434079 137434261 -39539879 + L3 LINE CR1 1362 1543 -34 2023 125 3 29 chrX 137434902 137435215 -39538925 - AluJo SINE Alu -5 307 3 2353 77 3 16 chrX 137435242 137435555 -39538585 + AluSc SINE Alu 1 309 0 342 333 53 0 chrX 137436094 137436244 -39537896 - MIR SINE MIR 0 262 105 200 89 22 44 chrX 137436247 137436292 -39537848 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 219 288 17 0 chrX 137436300 137436359 -39537781 - L2 LINE L2 -2 3270 3211 254 346 89 51 chrX 137437061 137437411 -39536729 - L2 LINE L2 -4 3309 2947 248 122 33 104 chrX 137437855 137437960 -39536180 + HsTC2 DNA Tc2 14 1835 -63 402 232 32 0 chrX 137438093 137438188 -39535952 + MER68 LTR ERV1 458 555 -7 1529 240 62 24 chrX 137438209 137438815 -39535325 + L1M4 LINE L1 4182 4860 -1286 3362 149 39 8 chrX 137438815 137439517 -39534623 - L1MA4A LINE L1 -26 6274 5517 1630 194 9 59 chrX 137439515 137439677 -39534463 - L1M2 LINE L1 -3384 4181 4012 * 1509 89 4 61 chrX 137439677 137439924 -39534216 - L1PA14 LINE L1 -3 6158 5926 1630 194 9 59 chrX 137439924 137440183 -39533957 - L1M2 LINE L1 -3553 4012 3781 2135 121 7 3 chrX 137440233 137440538 -39533602 - AluSx SINE Alu -6 306 1 618 189 0 8 chrX 137440570 137440702 -39533438 - L1 LINE L1 -3775 3790 3660 7763 146 22 14 chrX 137440727 137442000 -39532140 - L1 LINE L1 -6268 1297 15 302 210 12 12 chrX 137442015 137442096 -39532044 - L1M2 LINE L1 -4148 3418 3338 237 167 0 0 chrX 137442121 137442169 -39531971 - LTR66 LTR ERVL -169 441 394 245 146 21 0 chrX 137442178 137442226 -39531914 + (TA)n Simple_repeat Simple_repeat 2 50 0 2220 92 3 3 chrX 137442239 137442554 -39531586 - L1MA1 LINE L1 -42 6260 5946 4256 180 8 7 chrX 137442584 137443438 -39530702 - L1M2 LINE L1 -4232 3334 2480 853 220 6 12 chrX 137443470 137443638 -39530502 - AluJo SINE Alu -141 171 5 2049 239 18 189 chrX 137443638 137444112 -39530028 - L1M2 LINE L1 -5714 1852 1299 568 246 0 0 chrX 137444112 137444226 -39529914 + AluJb SINE Alu 5 118 -194 2049 239 18 189 chrX 137444226 137445004 -39529136 - L1M2 LINE L1 -6267 1299 720 4416 186 35 21 chrX 137445004 137446311 -39527829 + L1MB8 LINE L1 4848 6178 0 31458 74 8 4 chrX 137446550 137452690 -39521450 - L1PA6 LINE L1 -3 6151 11 838 247 61 16 chrX 137452744 137452991 -39521149 + MIR SINE MIR 5 262 0 4307 127 19 7 chrX 137453065 137453768 -39520372 + MER50 LTR ERV1 1 711 -23 373 255 6 57 chrX 137454018 137454115 -39520025 + L1MEd LINE L1 5 93 -6026 1962 144 0 0 chrX 137454115 137454406 -39519734 + AluJb SINE Alu 1 291 -21 373 255 6 57 chrX 137454406 137454465 -39519675 + L1MEd LINE L1 93 153 -5966 525 277 40 32 chrX 137454606 137455084 -39519056 + L1ME LINE L1 5043 5519 -651 357 304 29 22 chrX 137455701 137455839 -39518301 - L2 LINE L2 0 3313 3175 1225 144 0 0 chrX 137456347 137456527 -39517613 - FRAM SINE Alu -1 175 1 400 228 103 37 chrX 137457905 137458041 -39516099 + L2 LINE L2 3161 3305 -8 217 294 0 68 chrX 137458255 137458401 -39515739 + A-rich Low_complexity Low_complexity 4 139 0 2035 139 0 13 chrX 137459166 137459468 -39514672 - AluJo SINE Alu -14 298 1 4406 195 21 13 chrX 137459637 137461237 -39512903 + L1MB8 LINE L1 4559 6172 -6 1165 191 0 0 chrX 137461253 137461473 -39512667 + L1 LINE L1 4005 4224 -1922 2108 108 0 0 chrX 137511618 137511895 -39462245 - AluY SINE Alu -14 297 21 1092 188 92 29 chrX 137512465 137512665 -39461475 - L1MD2 LINE L1 -2 6357 6134 242 95 24 0 chrX 137512665 137512707 -39461433 + (TG)n Simple_repeat Simple_repeat 2 44 0 1092 188 92 29 chrX 137512707 137512778 -39461362 - L1MD2 LINE L1 -225 6134 6069 2214 88 3 7 chrX 137512807 137513120 -39461020 + AluSq SINE Alu 1 312 0 21 36 0 0 chrX 137513326 137513354 -39460786 + AT_rich Low_complexity Low_complexity 1 28 0 614 307 105 37 chrX 137513707 137514117 -39460023 - L2 LINE L2 -41 3272 2835 473 286 8 15 chrX 137514217 137514350 -39459790 - L2 LINE L2 -1 3312 3181 517 243 128 54 chrX 137514376 137514466 -39459674 - MLT1J LTR MaLR -27 419 337 2406 88 0 0 chrX 137514466 137514773 -39459367 - AluY SINE Alu -4 307 1 517 243 128 54 chrX 137514773 137515053 -39459087 - MLT1J LTR MaLR -109 337 27 403 263 91 27 chrX 137515057 137515243 -39458897 - L2 LINE L2 -114 3199 3002 2253 110 0 0 chrX 137515438 137515738 -39458402 - AluSg SINE Alu -10 300 1 1672 152 21 76 chrX 137515790 137516120 -39458020 - AluJb SINE Alu 0 312 1 335 327 63 48 chrX 137517188 137517547 -39456593 + L2 LINE L2 2621 3056 -257 2272 83 3 3 chrX 137517704 137517994 -39456146 - AluSq SINE Alu -23 290 1 215 295 0 64 chrX 137518013 137518091 -39456049 + L2 LINE L2 3230 3302 -11 752 184 34 7 chrX 137518211 137518358 -39455782 + MER5A DNA MER1_type 35 185 -4 922 175 0 23 chrX 137518387 137518558 -39455582 - MLT1A2 LTR MaLR 0 374 208 32 26 0 0 chrX 137518596 137518635 -39455505 + AT_rich Low_complexity Low_complexity 1 39 0 1162 119 89 13 chrX 137518635 137519037 -39455103 - MER21B LTR ERV1 -371 492 1 4305 162 34 24 chrX 137519037 137519835 -39454305 - MER21B-int LTR ERV1 0 4191 3386 1837 116 42 17 chrX 137519835 137520172 -39453968 - MER4A LTR ERV1 0 664 261 647 112 10 10 chrX 137520172 137520270 -39453870 - MER4A LTR ERV1 -566 98 1 6258 150 14 19 chrX 137520273 137521279 -39452861 - MER21B-int LTR ERV1 -805 3386 2386 608 157 78 65 chrX 137521279 137521432 -39452708 - MLT1A2 LTR MaLR -200 165 11 2483 76 0 0 chrX 137521848 137522151 -39451989 - AluSc SINE Alu -6 303 1 3393 149 35 24 chrX 137522494 137522748 -39451392 - L1MC3 LINE L1 -3 7782 7532 2159 102 20 7 chrX 137522748 137523041 -39451099 - AluSx SINE Alu -15 297 1 3393 149 35 24 chrX 137523041 137523412 -39450728 - L1MC3 LINE L1 -253 7532 7150 1171 123 6 0 chrX 137524293 137524456 -39449684 - AluJb SINE Alu -15 297 134 1999 135 44 0 chrX 137524542 137524838 -39449302 - AluSx SINE Alu -3 309 1 262 96 39 0 chrX 137524935 137524987 -39449153 - L1MA4 LINE L1 -2 6298 6245 1736 150 14 0 chrX 137525012 137525292 -39448848 - AluSx SINE Alu -26 286 3 565 98 0 0 chrX 137525294 137525376 -39448764 - L1MC3 LINE L1 -91 7694 7613 1237 120 77 10 chrX 137525376 137525585 -39448555 + AluSq SINE Alu 39 261 -52 315 0 0 0 chrX 137525585 137525620 -39448520 + (GA)n Simple_repeat Simple_repeat 2 36 0 432 0 0 0 chrX 137525645 137525693 -39448447 + (TG)n Simple_repeat Simple_repeat 2 49 0 2509 142 19 0 chrX 137525698 137526108 -39448032 - L1MC3 LINE L1 -169 7616 7199 613 148 42 1 chrX 137526167 137526286 -39447854 - L1MA4 LINE L1 -174 6126 6013 539 159 159 0 chrX 137526286 137526374 -39447766 + AluSq/x SINE Alu 22 123 -190 277 196 0 0 chrX 137526505 137526551 -39447589 + AluSp SINE Alu 119 164 -139 441 96 92 0 chrX 137526552 137526638 -39447502 + L1MA4 LINE L1 6185 6285 -20 2164 124 7 0 chrX 137526670 137526968 -39447172 + AluSx SINE Alu 1 300 -12 1531 123 5 0 chrX 137527177 137527388 -39446752 - AluSq SINE Alu -24 289 78 2341 119 51 19 chrX 137527450 137527860 -39446280 - L1MA4 LINE L1 0 6300 5878 1813 104 0 76 chrX 137528880 137529169 -39444971 + AluSx SINE Alu 1 267 -45 1983 152 0 0 chrX 137530083 137530373 -39443767 + AluSx SINE Alu 1 290 -22 201 313 15 15 chrX 137530395 137530462 -39443678 - L3 LINE CR1 -2 1575 1509 818 72 56 16 chrX 137530830 137530955 -39443185 - L1PA13 LINE L1 -3 6160 6031 204 40 0 0 chrX 137531017 137531042 -39443098 + (T)n Simple_repeat Simple_repeat 1 25 0 306 273 173 0 chrX 137531485 137531595 -39442545 + L2 LINE L2 3185 3313 0 1665 186 10 14 chrX 137531694 137531985 -39442155 - AluJo SINE Alu -16 296 7 3290 194 21 63 chrX 137532654 137533132 -39441008 - L1ME1 LINE L1 -6 6160 5734 2107 136 3 0 chrX 137533132 137533427 -39440713 + AluSx SINE Alu 1 296 -16 3290 194 21 63 chrX 137533427 137533778 -39440362 - L1ME1 LINE L1 -432 5734 5370 2259 86 17 0 chrX 137533809 137534101 -39440039 + AluSx SINE Alu 1 297 -15 693 163 8 0 chrX 137534115 137534244 -39439896 - L1ME1 LINE L1 -858 5288 5159 2153 114 3 7 chrX 137534253 137534552 -39439588 - AluSx SINE Alu -14 298 1 4022 218 29 94 chrX 137534553 137534610 -39439530 - L1ME1 LINE L1 -973 5173 5114 1740 156 35 11 chrX 137534610 137534892 -39439248 - AluJb SINE Alu -23 289 1 4022 218 29 94 chrX 137534892 137535636 -39438504 - L1ME1 LINE L1 -1032 5114 4511 2121 95 37 27 chrX 137535636 137535931 -39438209 - AluSc SINE Alu -11 298 1 4022 218 29 94 chrX 137535931 137536624 -39437516 - L1ME1 LINE L1 -1635 4511 3775 207 179 0 0 chrX 137537032 137537071 -39437069 + (TG)n Simple_repeat Simple_repeat 1 39 0 194 242 288 13 chrX 137537196 137537349 -39436791 + MIR SINE MIR 51 245 -17 892 133 23 0 chrX 137537618 137537746 -39436394 + FLAM_C SINE Alu 2 132 -1 402 307 117 26 chrX 137539212 137539437 -39434703 + L2 LINE L2 2718 2975 -297 1155 274 57 33 chrX 137539437 137539890 -39434250 - LTR16B LTR ERVL 0 464 1 402 307 117 26 chrX 137539890 137539973 -39434167 + L2 LINE L2 2975 3049 -223 244 315 0 14 chrX 137540071 137540144 -39433996 + L2 LINE L2 3201 3272 0 574 196 15 15 chrX 137541005 137541138 -39433002 + MIR SINE MIR 125 257 -5 198 0 0 0 chrX 137541731 137541753 -39432387 + (TCC)n Simple_repeat Simple_repeat 2 23 0 244 289 11 11 chrX 137541882 137541972 -39432168 + L2 LINE L2 2310 2399 -915 476 248 57 57 chrX 137542172 137542382 -39431758 - L1ME3A LINE L1 0 6170 5961 2362 153 41 22 chrX 137542530 137543063 -39431077 - L1MA9 LINE L1 -22 6290 5652 189 0 0 0 chrX 137543109 137543130 -39431010 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 986 180 21 16 chrX 137543138 137543332 -39430808 - AluJo SINE Alu -37 275 81 237 167 0 74 chrX 137543654 137543708 -39430432 + L2 LINE L2 3264 3313 0 482 328 113 0 chrX 137543962 137544157 -39429983 - MIR SINE MIR -9 253 37 1918 142 3 16 chrX 137544189 137544500 -39429640 - AluSx SINE Alu -5 307 1 351 292 23 15 chrX 137545454 137545584 -39428556 - MIR SINE MIR -6 256 126 791 247 12 6 chrX 137545648 137545810 -39428330 + FAM SINE Alu 5 167 -8 544 286 85 0 chrX 137546354 137546543 -39427597 + MIR SINE MIR 58 262 0 1696 144 46 49 chrX 137546620 137546926 -39427214 - AluJo SINE Alu -7 305 1 349 342 0 0 chrX 137547484 137547604 -39426536 - MER5A DNA MER1_type -63 126 7 568 316 51 21 chrX 137547781 137547881 -39426259 - MIR SINE MIR 0 262 166 2303 80 0 54 chrX 137547881 137548194 -39425946 + AluSx SINE Alu 2 297 -15 568 316 51 21 chrX 137548194 137548327 -39425813 - MIR SINE MIR -96 166 22 1243 152 16 53 chrX 137548462 137548511 -39425629 - L1MB3 LINE L1 0 6183 6134 2085 129 3 0 chrX 137548511 137548814 -39425326 - AluSx SINE Alu -8 304 1 1243 152 16 53 chrX 137548814 137549008 -39425132 - L1MB3 LINE L1 -49 6134 5949 2622 40 0 3 chrX 137549575 137549877 -39424263 + L1PA5 LINE L1 5853 6153 -1 1995 131 0 35 chrX 137550410 137550723 -39423417 + AluJb SINE Alu 1 302 -10 2273 81 3 7 chrX 137550731 137551026 -39423114 + AluSx SINE Alu 1 294 -18 2841 16 0 0 chrX 137551263 137551573 -39422567 - AluYb8 SINE Alu -8 310 1 359 275 50 50 chrX 137551580 137551844 -39422296 - L1MC4a LINE L1 -315 5806 5663 203 111 83 0 chrX 137552069 137552105 -39422035 - MIR SINE MIR -73 189 151 1130 107 59 21 chrX 137552113 137552300 -39421840 - L1MA10 LINE L1 -2 6332 6139 824 130 55 7 chrX 137552300 137552446 -39421694 - L1MB1 LINE L1 -247 5921 5769 1813 137 10 41 chrX 137552516 137552845 -39421295 - AluSx SINE Alu 0 320 1 3309 147 11 15 chrX 137553080 137553594 -39420546 - L1MB1 LINE L1 -543 5791 5274 2329 94 0 34 chrX 137553594 137553914 -39420226 - AluSx SINE Alu -3 309 1 3309 147 11 15 chrX 137553914 137554270 -39419870 - L1MB1 LINE L1 -1060 5274 4918 644 338 16 64 chrX 137554490 137554866 -39419274 + L2 LINE L2 2818 3175 -97 1112 228 25 14 chrX 137554929 137555210 -39418930 + L2 LINE L2 3024 3307 -6 1845 176 0 13 chrX 137555241 137555547 -39418593 - AluJo SINE Alu -10 302 1 531 289 80 50 chrX 137555555 137555610 -39418530 + MIR SINE MIR 17 69 -193 1739 185 0 3 chrX 137555610 137555912 -39418228 - AluJb SINE Alu -11 301 1 531 289 80 50 chrX 137555912 137555974 -39418166 + MIR SINE MIR 69 128 -134 2279 123 0 0 chrX 137555974 137556284 -39417856 - AluSg SINE Alu 0 310 1 531 289 80 50 chrX 137556284 137556404 -39417736 + MIR SINE MIR 128 262 0 201 39 0 0 chrX 137556559 137556585 -39417555 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2243 65 4 11 chrX 137556589 137556868 -39417272 - AluSc SINE Alu -32 277 1 1399 171 94 22 chrX 137556978 137557253 -39416887 - AluJo SINE Alu -17 295 1 553 211 175 29 chrX 137557690 137557861 -39416279 - MIR SINE MIR -6 256 61 1913 161 0 19 chrX 137558251 137558568 -39415572 - AluJb SINE Alu -1 311 1 2074 120 0 0 chrX 137558777 137559097 -39415043 - AluSx SINE Alu 0 320 1 407 278 38 8 chrX 137559595 137559728 -39414412 + MIR SINE MIR 49 185 -77 4310 163 124 14 chrX 137559728 137560544 -39413596 - MER21A LTR ERV1 0 931 26 288 0 0 0 chrX 137560546 137560578 -39413562 + (TG)n Simple_repeat Simple_repeat 2 33 0 832 294 35 8 chrX 137560632 137560887 -39413253 + MIR SINE MIR 1 262 0 2379 105 0 0 chrX 137561507 137561812 -39412328 - AluSx SINE Alu -7 305 1 2792 13 0 13 chrX 137562213 137562528 -39411612 - AluYa5 SINE Alu 0 311 1 2217 102 84 3 chrX 137562870 137563204 -39410936 - L1MA5 LINE L1 -6 6294 5934 641 136 71 36 chrX 137563395 137563535 -39410605 + L1MB8 LINE L1 6028 6172 -6 712 203 38 61 chrX 137563562 137563774 -39410366 + MIR SINE MIR 56 262 0 503 312 51 27 chrX 137563790 137564085 -39410055 - L2 LINE L2 -1042 2272 1971 1507 211 123 41 chrX 137564100 137564465 -39409675 - MSTD LTR MaLR 0 396 2 341 309 0 0 chrX 137564466 137564547 -39409593 - MSTD-int LTR MaLR 0 1735 1655 23 0 0 0 chrX 137564547 137564570 -39409570 + AT_rich Low_complexity Low_complexity 1 23 0 1547 173 186 43 chrX 137564573 137565019 -39409121 - LTR10A LTR ERV1 -99 510 1 18879 91 24 59 chrX 137565024 137569123 -39405017 - Harlequin LTR ERV1 -1 7784 704 484 232 95 137 chrX 137569327 137569845 -39404295 - Harlequin LTR ERV1 -5962 687 192 595 214 110 0 chrX 137569986 137570131 -39404009 - Harlequin LTR ERV1 -6484 165 5 476 181 7 71 chrX 137570131 137570264 -39403876 - LTR10A LTR ERV1 0 609 437 216 97 0 0 chrX 137570279 137570310 -39403830 + (T)n Simple_repeat Simple_repeat 1 31 0 542 224 0 0 chrX 137570310 137570408 -39403732 - FRAM SINE Alu -71 105 8 6580 229 55 36 chrX 137570410 137571506 -39402634 - MSTD-int LTR MaLR -74 1661 521 2180 106 10 3 chrX 137571506 137571809 -39402331 - AluSg1 SINE Alu -4 305 1 6580 229 55 36 chrX 137571809 137572339 -39401801 - MSTD-int LTR MaLR -1214 521 3 2184 201 15 18 chrX 137572342 137572739 -39401401 - MSTD LTR MaLR 0 396 1 210 235 228 13 chrX 137572740 137572889 -39401251 - L2 LINE L2 -1357 1957 1777 455 277 10 0 chrX 137572895 137572996 -39401144 - L2 LINE L2 -2 3311 3210 1207 149 6 6 chrX 137573778 137573953 -39400187 + FAM SINE Alu 1 175 0 1907 156 0 13 chrX 137574723 137575025 -39399115 - AluJo SINE Alu -14 298 1 1792 148 20 14 chrX 137575042 137575339 -39398801 - AluJb SINE Alu -13 299 1 27 49 0 0 chrX 137575891 137575932 -39398208 + AT_rich Low_complexity Low_complexity 1 41 0 219 323 32 0 chrX 137577551 137577613 -39396527 - MIR3 SINE MIR -36 172 109 556 303 17 29 chrX 137578638 137578813 -39395327 - MIR SINE MIR -82 180 8 180 152 0 0 chrX 137579123 137579156 -39394984 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1962 76 8 4 chrX 137580144 137580417 -39393723 + AluY SINE Alu 35 308 0 1281 64 6 0 chrX 137581420 137581577 -39392563 - L1PB1 LINE L1 0 6151 5994 394 342 84 19 chrX 137582459 137582760 -39391380 - L2 LINE L2 -253 3019 2704 486 242 97 24 chrX 137582864 137582988 -39391152 + L2 LINE L2 3140 3272 0 4451 141 9 11 chrX 137583040 137583482 -39390658 - L1MB5 LINE L1 0 6174 5733 2177 111 3 0 chrX 137583482 137583770 -39390370 - AluSx SINE Alu -18 294 6 4451 141 9 11 chrX 137583770 137584028 -39390112 - L1MB5 LINE L1 -441 5733 5476 258 32 0 0 chrX 137585413 137585444 -39388696 + (TG)n Simple_repeat Simple_repeat 2 32 0 2192 103 10 0 chrX 137585908 137586208 -39387932 - AluSx SINE Alu -9 303 1 2436 101 7 0 chrX 137586388 137586695 -39387445 - AluSx SINE Alu -3 309 1 2348 82 0 0 chrX 137586737 137587028 -39387112 + AluSq SINE Alu 1 291 -22 331 273 144 36 chrX 137587062 137587201 -39386939 - MIR3 SINE MIR -43 165 12 501 222 43 8 chrX 137587499 137587616 -39386524 + MER103 DNA DNA 1 121 -45 200 250 107 0 chrX 137588574 137588630 -39385510 - MIR SINE MIR -62 146 85 1271 156 95 53 chrX 137588737 137589020 -39385120 - AluJo SINE Alu -17 295 1 257 211 0 53 chrX 137592150 137592207 -39381933 + MER5B DNA MER1_type 1 54 -124 250 398 80 0 chrX 137593250 137593426 -39380714 - L3b LINE CR1 -114 1469 1280 236 309 184 31 chrX 137594177 137594400 -39379740 - L3b LINE CR1 -5 1578 1322 514 310 35 0 chrX 137596320 137596465 -39377675 + MIR SINE MIR 2 151 -111 2149 64 52 0 chrX 137597755 137598022 -39376118 - AluY SINE Alu -30 281 1 40 37 0 0 chrX 137598260 137598314 -39375826 + AT_rich Low_complexity Low_complexity 1 54 0 916 135 0 0 chrX 137598314 137598447 -39375693 - AluSq/x SINE Alu -180 133 1 982 194 74 21 chrX 137598447 137598731 -39375409 - L1 LINE L1 -815 5331 5033 1982 101 40 13 chrX 137599209 137599507 -39374633 - AluSx SINE Alu -6 306 1 1512 118 59 86 chrX 137599604 137599728 -39374412 + AluJb SINE Alu 1 127 -185 2322 90 0 17 chrX 137599728 137600062 -39374078 + AluSx SINE Alu 1 312 0 1512 118 59 86 chrX 137600062 137600241 -39373899 + AluJb SINE Alu 127 296 -16 238 353 49 16 chrX 137600625 137600747 -39373393 - L2 LINE L2 -9 3304 3179 1407 122 5 0 chrX 137602005 137602237 -39371903 - AluSg/x SINE Alu 0 320 88 2052 113 3 23 chrX 137602238 137602539 -39371601 - AluSx SINE Alu -17 295 1 320 321 80 27 chrX 137602542 137602654 -39371486 - L2 LINE L2 -14 3258 3141 228 306 52 52 chrX 137604269 137604517 -39369623 - L2 LINE L2 -213 3059 2812 * 1126 325 82 12 chrX 137604514 137605000 -39369140 + L2 LINE L2 2350 2869 -445 332 310 0 55 chrX 137605118 137605263 -39368877 + L2 LINE L2 3136 3272 0 3145 154 81 2 chrX 137607598 137608177 -39365963 - L1MB5 LINE L1 -31 6143 5519 5758 137 39 36 chrX 137608320 137609383 -39364757 - L1MC1 LINE L1 0 6333 5268 1693 141 93 0 chrX 137609625 137609895 -39364245 + AluJb SINE Alu 3 297 -15 868 253 97 134 chrX 137610280 137610516 -39363624 - L2 LINE L2 -490 2824 2581 1005 217 56 12 chrX 137610516 137610765 -39363375 - MIR SINE MIR 0 262 3 868 253 97 134 chrX 137610765 137611208 -39362932 - L2 LINE L2 -733 2581 2170 1035 191 18 68 chrX 137611731 137611978 -39362162 - L1MCc LINE L1 -3073 3868 3641 2095 103 21 0 chrX 137611978 137612259 -39361881 - AluSp SINE Alu -21 292 6 1035 191 18 68 chrX 137612259 137612323 -39361817 - L1MCc LINE L1 -3300 3641 3575 366 194 41 10 chrX 137612313 137612411 -39361729 - L1MCc LINE L1 -4424 2698 2598 * 2862 148 44 49 chrX 137612423 137612466 -39361674 - L1MB4 LINE L1 -2 6178 6136 2313 81 3 7 chrX 137612466 137612761 -39361379 - AluSp SINE Alu -19 294 1 2862 148 44 49 chrX 137612761 137613314 -39360826 - L1MB4 LINE L1 -44 6136 5583 2154 124 0 3 chrX 137613314 137613612 -39360528 - AluSx SINE Alu -15 297 1 2862 148 44 49 chrX 137613612 137613624 -39360516 - L1MB4 LINE L1 -597 5583 5572 2017 276 62 48 chrX 137613620 137614469 -39359671 - L1MCc LINE L1 -4543 2579 1743 * 1714 176 7 20 chrX 137614469 137614771 -39359369 - AluJo SINE Alu -10 302 5 2017 276 62 48 chrX 137614771 137616129 -39358011 - L1MCc LINE L1 -5379 1743 26 248 282 39 39 chrX 137616152 137616255 -39357885 + L2 LINE L2 2714 2816 -498 478 277 262 0 chrX 137616953 137617159 -39356981 - MIR SINE MIR 0 262 3 24 0 0 0 chrX 137617808 137617832 -39356308 + AT_rich Low_complexity Low_complexity 1 24 0 2390 102 0 6 chrX 137618442 137618756 -39355384 + AluSx SINE Alu 1 312 0 257 338 0 0 chrX 137620789 137620863 -39353277 + tRNA-Ile-ATT tRNA tRNA 1 74 -3 276 258 157 11 chrX 137621456 137621545 -39352595 + L2 LINE L2 3210 3311 -2 552 169 310 0 chrX 137621802 137621944 -39352196 + MER5A DNA MER1_type 4 189 0 2240 114 3 0 chrX 137622491 137622798 -39351342 + AluSq SINE Alu 1 308 -5 620 259 35 8 chrX 137624269 137624475 -39349665 - MIR SINE MIR 0 262 53 186 133 0 0 chrX 137625487 137625517 -39348623 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 295 325 12 0 chrX 137628797 137628877 -39345263 - MIR SINE MIR -85 123 43 2423 168 70 29 chrX 137629224 137629713 -39344427 - MER21A LTR ERV1 0 931 423 4080 185 53 33 chrX 137629723 137630540 -39343600 - MER21B LTR ERV1 -18 845 13 825 239 27 0 chrX 137630762 137630946 -39343194 + MER5A DNA MER1_type 1 189 0 300 27 0 0 chrX 137631945 137631982 -39342158 + (TG)n Simple_repeat Simple_repeat 1 37 0 1772 144 47 7 chrX 137632074 137632351 -39341789 + AluJo SINE Alu 1 288 -24 2154 141 0 0 chrX 137632396 137632695 -39341445 - AluSx SINE Alu -13 299 1 2297 104 0 7 chrX 137633215 137633522 -39340618 - AluSx SINE Alu -5 307 3 189 354 127 0 chrX 137634620 137634699 -39339441 - MIR SINE MIR -85 123 35 2467 83 0 0 chrX 137634847 137635149 -39338991 + AluSx SINE Alu 3 304 -8 435 319 108 48 chrX 137636297 137636796 -39337344 + L2 LINE L2 2710 3233 -39 1797 173 17 0 chrX 137638562 137638851 -39335289 - AluJo SINE Alu -17 295 2 2411 69 0 22 chrX 137640080 137640398 -39333742 - AluY SINE Alu 0 311 1 1961 159 3 13 chrX 137640697 137641011 -39333129 - AluSx SINE Alu -1 311 1 28 79 0 0 chrX 137641095 137641158 -39332982 + AT_rich Low_complexity Low_complexity 1 63 0 1909 173 6 0 chrX 137641370 137641716 -39332424 - L1PA16 LINE L1 -24 6142 5795 7464 235 39 17 chrX 137641720 137643609 -39330531 - L1PBb LINE L1 -1992 4857 3010 2033 117 3 3 chrX 137643609 137643892 -39330248 - AluSx SINE Alu -25 287 5 7464 235 39 17 chrX 137643892 137644287 -39329853 - L1PBb LINE L1 -3839 3010 2625 1286 213 52 31 chrX 137644287 137644574 -39329566 + AluJo SINE Alu 1 293 -19 7464 235 39 17 chrX 137644574 137645655 -39328485 - L1PBb LINE L1 -4224 2625 1361 273 304 0 0 chrX 137645665 137645757 -39328383 - L1PBb LINE L1 -5285 1564 1473 391 423 52 27 chrX 137646630 137647034 -39327106 - L1PBb LINE L1 -6431 419 6 356 223 289 25 chrX 137648475 137648672 -39325468 - MIR SINE MIR -13 249 1 1265 199 129 32 chrX 137648883 137649122 -39325018 - MLT1A2 LTR MaLR 0 374 160 2593 92 20 3 chrX 137649122 137649471 -39324669 - THE1A LTR MaLR 0 355 1 11972 84 10 1 chrX 137649471 137651038 -39323102 - THE1A-int LTR MaLR 0 1580 1 2811 65 6 0 chrX 137651038 137651391 -39322749 - THE1A LTR MaLR 0 355 1 1265 199 129 32 chrX 137651391 137651490 -39322650 - MLT1A2 LTR MaLR -213 161 1 417 183 97 12 chrX 137651490 137651606 -39322534 - MLT1A2 LTR MaLR -228 137 1 507 274 147 0 chrX 137652525 137652682 -39321458 + MER5A DNA MER1_type 9 188 -1 577 228 47 53 chrX 137652913 137653084 -39321056 - MER5B DNA MER1_type -7 171 2 429 20 0 0 chrX 137653115 137653165 -39320975 + (TA)n Simple_repeat Simple_repeat 2 51 0 882 264 60 39 chrX 137653340 137653775 -39320365 - MLT2C2 LTR ERVL 0 464 21 23 0 0 0 chrX 137654244 137654267 -39319873 + AT_rich Low_complexity Low_complexity 1 23 0 406 342 88 34 chrX 137654799 137655322 -39318818 + L2 LINE L2 2228 2778 -536 258 105 0 0 chrX 137655818 137655856 -39318284 + (CA)n Simple_repeat Simple_repeat 1 38 0 238 371 29 14 chrX 137656793 137656933 -39317207 + L2 LINE L2 2922 3063 -209 783 179 313 30 chrX 137658624 137658892 -39315248 - MER2 DNA MER2_type 0 344 1 538 202 1 3 chrX 137660682 137660814 -39313326 - L1ME2 LINE L1 0 6170 6040 753 169 24 0 chrX 137660821 137660945 -39313195 + AluJb SINE Alu 9 135 -177 1891 141 47 0 chrX 137661164 137661441 -39312699 - AluSx SINE Alu -22 290 1 533 248 0 0 chrX 137661441 137661570 -39312570 - L1MB7 LINE L1 -42 6142 6014 267 250 11 11 chrX 137661573 137661661 -39312479 - L1ME2 LINE L1 -215 5906 5819 375 347 17 4 chrX 137662196 137662368 -39311772 - MIR SINE MIR -62 146 18 531 271 0 15 chrX 137663108 137663241 -39310899 - L2 LINE L2 0 3313 3183 577 272 86 31 chrX 137663374 137663823 -39310317 - MARNA DNA Mariner -56 530 11 256 61 0 0 chrX 137663912 137663945 -39310195 - MER1B DNA MER1_type 0 329 297 * 270 170 0 0 chrX 137663941 137663994 -39310146 - MER1B DNA MER1_type -185 112 60 12471 180 14 34 chrX 137665457 137668624 -39305516 - L1PA15 LINE L1 0 6165 3052 1864 140 34 3 chrX 137668624 137668916 -39305224 - AluSx SINE Alu -11 301 1 12471 180 14 34 chrX 137668916 137669420 -39304720 - L1PA15 LINE L1 -3113 3052 2540 1141 239 84 23 chrX 137670028 137670371 -39303769 - L2 LINE L2 -1 3312 2949 205 247 300 41 chrX 137671101 137671271 -39302869 + L2 LINE L2 3043 3256 -16 222 309 15 0 chrX 137671625 137671693 -39302447 - L2 LINE L2 0 3313 3245 802 205 19 0 chrX 137671693 137671849 -39302291 - MER90 LTR ERV1 0 614 456 1189 190 151 66 chrX 137673228 137673786 -39300354 - L1MC5 LINE L1 -28 7933 7329 277 337 99 29 chrX 137673786 137673958 -39300182 - MIR3 SINE MIR -15 193 10 563 225 108 52 chrX 137674092 137674305 -39299835 + MIR SINE MIR 36 260 -2 390 310 69 57 chrX 137675918 137676011 -39298129 + MIR SINE MIR 15 105 -157 692 247 23 6 chrX 137676011 137676185 -39297955 + MER5B DNA MER1_type 2 178 0 390 310 69 57 chrX 137676185 137676336 -39297804 + MIR SINE MIR 105 262 0 260 314 38 9 chrX 137677707 137677812 -39296328 + MIR3 SINE MIR 71 178 -30 249 57 0 0 chrX 137679216 137679251 -39294889 + (GA)n Simple_repeat Simple_repeat 1 35 0 864 111 8 0 chrX 137679408 137679525 -39294615 + FLAM_C SINE Alu 1 118 -15 207 0 0 0 chrX 137679529 137679552 -39294588 + (TA)n Simple_repeat Simple_repeat 2 24 0 51 0 0 0 chrX 137679552 137679603 -39294537 + AT_rich Low_complexity Low_complexity 1 51 0 672 200 100 0 chrX 137680044 137680194 -39293946 + MIR SINE MIR 58 222 -40 22 0 0 0 chrX 137681524 137681546 -39292594 + AT_rich Low_complexity Low_complexity 1 22 0 209 342 112 25 chrX 137885111 137885272 -39088868 - MIR3 SINE MIR -6 202 28 279 0 0 0 chrX 137887329 137887360 -39086780 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 312 298 102 48 chrX 137887697 137887899 -39086241 + MIR SINE MIR 37 252 -10 342 0 0 0 chrX 137888382 137888420 -39085720 + (CA)n Simple_repeat Simple_repeat 2 39 0 225 278 19 0 chrX 137890071 137890125 -39084015 - L2 LINE L2 -9 3304 3250 1761 181 0 19 chrX 137890318 137890633 -39083507 + AluJo SINE Alu 1 309 -3 797 240 100 32 chrX 137890714 137890876 -39083264 - L1MC5 LINE L1 -292 7669 7519 1740 181 3 0 chrX 137890876 137891164 -39082976 - AluJo SINE Alu -23 289 1 797 240 100 32 chrX 137891164 137891490 -39082650 - L1MC5 LINE L1 -442 7519 7243 555 195 12 27 chrX 137891484 137891648 -39082492 - L1MC5 LINE L1 -744 7217 7095 * 286 249 122 39 chrX 137891657 137891862 -39082278 - L1M4 LINE L1 -3084 3062 2841 207 244 122 12 chrX 137892240 137892322 -39081818 + MIR SINE MIR 97 187 -75 2271 241 33 67 chrX 137892593 137893322 -39080818 + MER45R DNA AcHobo 2 705 -876 7203 162 10 3 chrX 137893324 137895032 -39079108 + L1MA4 LINE L1 4074 5800 -500 315 0 0 0 chrX 137895032 137895067 -39079073 + (CA)n Simple_repeat Simple_repeat 2 36 0 7203 162 10 3 chrX 137895067 137895536 -39078604 + L1MA4 LINE L1 5800 6265 -35 3370 155 51 9 chrX 137895541 137896224 -39077916 + MER45R DNA AcHobo 708 1419 -162 1176 200 138 34 chrX 137896224 137896579 -39077561 + MLT1D LTR MaLR 1 392 -113 960 168 84 117 chrX 137896590 137896923 -39077217 + MER33 DNA MER1_type 1 322 -2 2225 107 0 19 chrX 137897023 137897340 -39076800 + AluSq SINE Alu 1 311 -2 5916 142 28 13 chrX 137897647 137899288 -39074852 - L1MA4A LINE L1 0 6303 4642 1595 153 55 101 chrX 137899305 137899703 -39074437 - LTR25 LTR ERV1 0 794 415 246 222 143 0 chrX 137899674 137899737 -39074403 - MER51A LTR ERV1 -354 280 209 * 534 142 42 0 chrX 137899882 137899992 -39074148 - MER61E LTR ERV1 -484 85 1 6992 177 14 54 chrX 137899992 137900448 -39073692 - L1MA4A LINE L1 -1501 4645 4173 2460 73 0 0 chrX 137900448 137900749 -39073391 - AluY SINE Alu -10 301 1 6992 177 14 54 chrX 137900749 137901987 -39072153 - L1MA4A LINE L1 -1973 4173 3018 2251 108 13 0 chrX 137902056 137902363 -39071777 + AluSx SINE Alu 1 311 -1 334 306 48 44 chrX 137902417 137902623 -39071517 - L1MC/D LINE L1 -2263 5545 5339 910 268 105 34 chrX 137902689 137903012 -39071128 - L1M2 LINE L1 -648 5514 5215 790 176 30 12 chrX 137903012 137903177 -39070963 - L1MB3 LINE L1 -8 6175 6008 910 268 105 34 chrX 137903177 137903836 -39070304 - L1M2 LINE L1 -947 5215 4456 2502 255 98 28 chrX 137903920 137904770 -39069370 - L1ME2 LINE L1 -276 6386 5597 3212 157 5 16 chrX 137904770 137905099 -39069041 - L1MB7 LINE L1 -16 6168 5846 3588 128 6 0 chrX 137905099 137905623 -39068517 - MER1A DNA MER1_type 0 527 1 3212 157 5 16 chrX 137905623 137905873 -39068267 - L1MB7 LINE L1 -338 5846 5595 2502 255 98 28 chrX 137905873 137906033 -39068107 - L1ME2 LINE L1 -1065 5597 5450 7656 25 0 0 chrX 137906033 137907167 -39066973 - L1PA4 LINE L1 0 6155 5019 2502 255 98 28 chrX 137907167 137908301 -39065839 - L1ME2 LINE L1 -1212 5450 4080 * 2705 221 25 16 chrX 137908283 137908965 -39065175 + L1ME3 LINE L1 5465 6152 -10 380 308 75 47 chrX 137909031 137909391 -39064749 - L1ME2 LINE L1 -4939 1603 1234 320 160 130 60 chrX 137909483 137909583 -39064557 + MER94 DNA DNA 1 107 -27 274 394 65 5 chrX 137909824 137910040 -39064100 - L2 LINE L2 -1340 1974 1746 26 0 0 0 chrX 137910183 137910209 -39063931 + AT_rich Low_complexity Low_complexity 1 26 0 678 277 65 61 chrX 137910390 137910903 -39063237 - L1ME LINE L1 -327 5794 5268 698 246 90 6 chrX 137911555 137911722 -39062418 + MER91A DNA MER1_type 16 196 0 216 241 35 0 chrX 137912138 137912196 -39061944 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2340 97 0 0 chrX 137912239 137912539 -39061601 - AluSp SINE Alu -13 300 1 386 268 14 121 chrX 137912540 137912950 -39061190 - L1MC/D LINE L1 -394 5727 5401 982 204 41 32 chrX 137912950 137913171 -39060969 - MER58A DNA MER1_type -1 223 1 386 268 14 121 chrX 137913171 137913291 -39060849 - L1MC/D LINE L1 -720 5401 5270 385 323 74 24 chrX 137913321 137913618 -39060522 - L1MC/D LINE L1 -891 5255 4944 455 148 20 10 chrX 137913678 137913779 -39060361 - L1 LINE L1 -1643 4503 4402 433 44 29 0 chrX 137913779 137913846 -39060294 + L1MA7 LINE L1 6220 6289 -2 1020 281 102 26 chrX 137914099 137914707 -39059433 - L1 LINE L1 -1870 4276 3623 309 333 28 34 chrX 137914810 137914987 -39059153 - L1 LINE L1 -2632 3514 3339 226 296 19 0 chrX 137915024 137915078 -39059062 - L2 LINE L2 -70 3202 3148 230 147 0 0 chrX 137915096 137915130 -39059010 + tRNA-Arg-AGA tRNA tRNA 1 34 -42 913 225 102 30 chrX 137915313 137915686 -39058454 - L1MC5 LINE L1 -55 7906 7507 339 266 18 0 chrX 137915689 137915802 -39058338 - L1MC4 LINE L1 -2 8040 7926 2183 88 26 19 chrX 137915814 137916121 -39058019 - AluSp SINE Alu -4 309 1 2117 105 3 20 chrX 137916125 137916429 -39057711 - AluSx SINE Alu -13 299 1 22 0 0 0 chrX 137916540 137916562 -39057578 + AT_rich Low_complexity Low_complexity 1 22 0 2381 86 0 3 chrX 137916662 137916965 -39057175 + AluSp SINE Alu 1 302 -11 395 181 28 0 chrX 137916969 137917041 -39057099 + L1MC4 LINE L1 6934 7007 -1035 467 256 0 0 chrX 137917043 137917160 -39056980 + L1MC4a LINE L1 7160 7276 -532 260 216 126 24 chrX 137917175 137917342 -39056798 - L1MC5 LINE L1 -367 7594 7411 1267 253 58 125 chrX 137918673 137918868 -39055272 + MER45C DNA AcHobo 1 207 -746 2368 86 0 0 chrX 137918868 137919171 -39054969 + AluSg SINE Alu 1 303 -7 1267 253 58 125 chrX 137919171 137919664 -39054476 + MER45C DNA AcHobo 207 643 -310 263 296 0 0 chrX 137919652 137919706 -39054434 + MER45C DNA AcHobo 900 953 0 * 706 249 58 81 chrX 137920308 137920634 -39053506 + HsTC2 DNA Tc2 1286 1618 -280 2190 98 4 0 chrX 137920634 137920911 -39053229 + AluSq SINE Alu 1 278 -35 279 0 0 0 chrX 137920912 137920943 -39053197 + (CA)n Simple_repeat Simple_repeat 2 32 0 706 249 58 81 chrX 137920943 137921060 -39053080 + HsTC2 DNA Tc2 1617 1897 -1 27 0 0 0 chrX 137921087 137921114 -39053026 + AT_rich Low_complexity Low_complexity 1 27 0 459 306 55 25 chrX 137922081 137922280 -39051860 + MIR SINE MIR 8 212 -50 363 281 73 0 chrX 137922511 137922607 -39051533 + MIR SINE MIR 159 261 -1 845 265 9 30 chrX 137922631 137922861 -39051279 + MIR SINE MIR 26 250 -12 450 0 0 0 chrX 137923122 137923172 -39050968 + (TAG)n Simple_repeat Simple_repeat 1 50 0 2105 106 0 3 chrX 137923175 137923458 -39050682 - AluSg SINE Alu -28 282 1 4621 135 58 10 chrX 137923630 137924444 -39049696 + L1MB7 LINE L1 5324 6176 -8 873 269 33 0 chrX 137924711 137924923 -39049217 - MIR SINE MIR -39 223 5 247 396 13 7 chrX 137927442 137927591 -39046549 + MIR3 SINE MIR 27 176 -32 485 245 51 109 chrX 137928233 137928490 -39045650 - L2 LINE L2 -5 3308 3067 375 309 0 0 chrX 137928531 137928628 -39045512 + MIR SINE MIR 2 98 -164 505 320 97 13 chrX 137928831 137929059 -39045081 + L3 LINE CR1 1329 1575 -2 342 91 0 0 chrX 137930552 137930607 -39043533 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chrX 137932142 137932171 -39041969 + AT_rich Low_complexity Low_complexity 1 29 0 1045 184 87 5 chrX 137932495 137932702 -39041438 + MER58A DNA MER1_type 1 224 0 336 102 0 0 chrX 137932759 137932808 -39041332 + (ATG)n Simple_repeat Simple_repeat 2 50 0 731 244 80 0 chrX 137932836 137933012 -39041128 - MIR SINE MIR -48 214 25 495 308 100 31 chrX 137933028 137933610 -39040530 - L1MC5 LINE L1 -26 7935 7314 391 256 45 14 chrX 137933672 137934056 -39040084 - L1MC4 LINE L1 -595 7447 6991 342 188 25 12 chrX 137934059 137934139 -39040001 - L1MC4a LINE L1 -1116 6692 6612 2600 61 0 0 chrX 137934160 137934471 -39039669 + AluY SINE Alu 1 311 0 567 241 80 0 chrX 137935080 137935233 -39038907 - MIR SINE MIR -70 192 29 548 320 67 9 chrX 137936123 137936348 -39037792 + MIR SINE MIR 25 262 0 439 297 7 7 chrX 137936607 137936752 -39037388 + L2 LINE L2 1726 1870 -1444 1332 66 2 1 chrX 137936752 137936939 -39037201 + L1PA7 LINE L1 5939 6127 -27 662 65 11 0 chrX 137936939 137937031 -39037109 + (GAA)n Simple_repeat Simple_repeat 2 94 0 264 246 80 65 chrX 137937035 137937263 -39036877 + L2 LINE L2 1880 2169 -1145 1018 146 196 26 chrX 137937265 137937590 -39036550 + Tigger2a DNA MER2_type 1 443 -1 572 132 69 21 chrX 137937590 137937734 -39036406 + Charlie5 DNA MER1_type 2452 2602 -10 198 399 43 6 chrX 137938054 137938217 -39035923 + L2 LINE L2 3088 3256 -16 205 218 18 18 chrX 137939344 137939399 -39034741 + CT-rich Low_complexity Low_complexity 3 57 0 226 379 107 7 chrX 137939988 137940128 -39034012 - L3 LINE CR1 -70 1507 1354 519 176 28 0 chrX 137940128 137940236 -39033904 + L1PA16 LINE L1 6055 6165 -1 1805 47 0 4 chrX 137940524 137940756 -39033384 + L1PA5 LINE L1 5921 6151 -3 530 271 59 35 chrX 137940905 137941075 -39033065 - L3 LINE CR1 -192 1385 1212 386 361 155 12 chrX 137941112 137941364 -39032776 - L3 LINE CR1 -280 1297 1010 379 303 0 78 chrX 137941571 137941789 -39032351 + LTR67 LTR ERVL 357 557 0 339 308 91 59 chrX 137941792 137941911 -39032229 - L3 LINE CR1 -635 942 828 1953 141 72 40 chrX 137941911 137942288 -39031852 - MLT1B LTR MaLR -1 389 1 339 308 91 59 chrX 137942288 137942421 -39031719 - L3 LINE CR1 -749 828 682 199 257 171 46 chrX 137942872 137943024 -39031116 - MER5A DNA MER1_type -2 187 17 * 704 194 0 8 chrX 137942897 137943026 -39031114 + MER5B DNA MER1_type 51 178 0 203 152 0 0 chrX 137943071 137943104 -39031036 + (CA)n Simple_repeat Simple_repeat 2 34 0 282 341 30 36 chrX 137943157 137943324 -39030816 - L3 LINE CR1 -1293 284 119 2657 215 36 73 chrX 137943349 137943595 -39030545 - L1ME1 LINE L1 -4 6162 5909 240 158 0 0 chrX 137943595 137943633 -39030507 - MER58 DNA MER1_type 0 2420 2383 2657 215 36 73 chrX 137943633 137944256 -39029884 - L1ME1 LINE L1 -257 5909 5289 * 5576 181 32 30 chrX 137944227 137945469 -39028671 - L1MD1 LINE L1 -5 6237 5369 2253 159 49 7 chrX 137945469 137945877 -39028263 - MSTB LTR MaLR -1 425 1 5576 181 32 30 chrX 137945877 137946831 -39027309 - L1MD1 LINE L1 -873 5369 4419 * 6304 179 7 20 chrX 137946828 137947976 -39026164 + MSTA-int LTR MaLR 448 1580 0 1918 141 162 8 chrX 137947976 137948346 -39025794 + MSTA LTR MaLR 1 427 -1 695 129 0 0 chrX 137948349 137948450 -39025690 - L1PA13 LINE L1 -32 6131 6031 20758 188 41 26 chrX 137948472 137954102 -39020038 - L1MD1 LINE L1 -1778 5787 97 2434 253 40 21 chrX 137954115 137955438 -39018702 - L1M4 LINE L1 -2896 3748 2380 2007 193 6 3 chrX 137955443 137955800 -39018340 - MLT1A1 LTR MaLR 0 365 8 1067 153 6 11 chrX 137955800 137955976 -39018164 + AluJo SINE Alu 85 259 -53 234 0 0 0 chrX 137955986 137956012 -39018128 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1046 226 36 0 chrX 137956117 137956369 -39017771 - L1MD3 LINE L1 -21 7974 7714 7507 38 0 0 chrX 137956392 137957734 -39016406 - L1PA5 LINE L1 -3 6151 4810 519 295 56 6 chrX 137957821 137958177 -39015963 - L1M4 LINE L1 -4832 1710 1429 234 0 0 0 chrX 137958182 137958208 -39015932 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 751 136 0 0 chrX 137958216 137958326 -39015814 - AluSp/q SINE Alu -38 275 166 1479 137 0 0 chrX 137958326 137958531 -39015609 - AluSg SINE Alu -105 205 1 521 164 62 36 chrX 137958532 137958727 -39015413 - L1MEc LINE L1 -5242 1154 955 28 71 0 0 chrX 137958765 137958821 -39015319 + AT_rich Low_complexity Low_complexity 1 56 0 1099 191 22 43 chrX 137959082 137959312 -39014828 - AluJb SINE Alu -1 311 87 225 214 143 27 chrX 137959379 137959491 -39014649 - L1ME LINE L1 -341 5780 5656 370 264 19 71 chrX 137959503 137959658 -39014482 - MIR SINE MIR -3 259 113 311 328 61 8 chrX 137959776 137959907 -39014233 - L1ME LINE L1 -2137 5671 5534 316 263 7 59 chrX 137960130 137960282 -39013858 - L1MC4a LINE L1 -1959 5849 5706 1159 274 28 88 chrX 137960301 137960677 -39013463 - L2 LINE L2 -3 3310 2913 2084 144 123 5 chrX 137960677 137961060 -39013080 - MSTA LTR MaLR 0 428 1 1159 274 28 88 chrX 137961060 137961220 -39012920 - L2 LINE L2 -400 2913 2745 2223 106 26 0 chrX 137961220 137961523 -39012617 + AluSq SINE Alu 3 313 0 1159 274 28 88 chrX 137961523 137961785 -39012355 - L2 LINE L2 -568 2745 2534 258 208 0 0 chrX 137961785 137961833 -39012307 + Tigger1 DNA MER2_type 1 48 -2370 267 140 0 0 chrX 137961840 137961890 -39012250 + (TA)n Simple_repeat Simple_repeat 1 50 0 264 303 0 0 chrX 137961895 137961984 -39012156 - L1MC4 LINE L1 -1339 6703 6615 182 61 0 61 chrX 137961988 137962021 -39012119 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 307 258 0 82 chrX 137962028 137962125 -39012015 + L1MC4 LINE L1 6615 6703 -1339 8430 149 21 17 chrX 137962154 137963117 -39011023 + Tigger1 DNA MER2_type 51 1008 -1410 2407 120 13 16 chrX 137963117 137963493 -39010647 - THE1C LTR MaLR 0 375 1 8430 149 21 17 chrX 137963493 137963793 -39010347 + Tigger1 DNA MER2_type 1008 1305 -1113 3076 104 0 9 chrX 137963793 137964245 -39009895 + L1PA13 LINE L1 5711 6158 -5 8430 149 21 17 chrX 137964245 137965209 -39008931 + Tigger1 DNA MER2_type 1305 2398 -20 771 267 118 8 chrX 137965213 137965322 -39008818 - L2 LINE L2 -777 2537 2441 1817 213 43 0 chrX 137965322 137965670 -39008470 + MLT1A1 LTR MaLR 3 365 0 771 267 118 8 chrX 137965670 137965822 -39008318 - L2 LINE L2 -873 2441 2247 510 216 25 88 chrX 137965841 137966045 -39008095 - L1M4 LINE L1 -1199 4947 4757 6855 241 30 10 chrX 137966069 137966564 -39007576 + L1M4 LINE L1 2321 2805 -3341 2197 97 0 0 chrX 137966564 137966880 -39007260 - AluSc SINE Alu 0 316 1 6855 241 30 10 chrX 137966880 137968318 -39005822 + L1M4 LINE L1 2805 4295 -1851 685 200 0 0 chrX 137968323 137968438 -39005702 + L1MC1 LINE L1 6198 6312 -21 2756 117 9 68 chrX 137968534 137968761 -39005379 - L1MA9 LINE L1 -3 6309 6070 1633 191 0 27 chrX 137968761 137969059 -39005081 - AluJb SINE Alu -21 291 2 2756 117 9 68 chrX 137969059 137969379 -39004761 - L1MA9 LINE L1 -242 6070 5794 362 148 313 0 chrX 137969464 137969592 -39004548 - L1MA9 LINE L1 -935 5424 5257 648 287 43 6 chrX 137969639 137969967 -39004173 - L1M4 LINE L1 -874 5272 4933 22 99 0 0 chrX 137969985 137970056 -39004084 + AT_rich Low_complexity Low_complexity 1 71 0 1306 234 90 29 chrX 137970056 137970577 -39003563 - L1MDa LINE L1 -2661 3879 3327 444 270 162 4 chrX 137970575 137970816 -39003324 + L1M4 LINE L1 3634 3912 -2234 * 424 258 86 37 chrX 137970797 137971041 -39003099 - L1MDa LINE L1 -4402 2138 1883 * 807 206 5 0 chrX 137971216 137971379 -39002761 - L1P5 LINE L1 -496 5660 5492 40596 68 4 6 chrX 137971626 137977786 -38996354 + L1PA6 LINE L1 8 6148 -6 2446 76 0 0 chrX 137978134 137978438 -38995702 - AluSx SINE Alu -8 304 1 227 325 127 0 chrX 137979327 137979453 -38994687 - MIR SINE MIR -56 206 65 238 230 30 26 chrX 137979801 137980072 -38994068 + (TA)n Simple_repeat Simple_repeat 1 272 0 230 240 260 21 chrX 137981946 137982042 -38992098 - MIR3 SINE MIR -41 167 49 28 0 0 0 chrX 137982435 137982463 -38991677 + AT_rich Low_complexity Low_complexity 1 28 0 252 167 42 0 chrX 137982464 137982512 -38991628 - MER94 DNA DNA -84 50 1 329 232 53 32 chrX 137983414 137983509 -38990631 + MIR3 SINE MIR 95 191 -17 255 239 134 0 chrX 137984268 137984335 -38989805 + MIR3 SINE MIR 83 158 -50 1006 253 126 16 chrX 137984671 137985035 -38989105 - MLT1L LTR MaLR -17 598 195 233 259 0 0 chrX 137985015 137985069 -38989071 - LTR67 LTR ERVL -403 154 101 * 316 151 132 66 chrX 137986625 137986731 -38987409 + Charlie7 DNA MER1_type 14 126 -2486 311 267 12 0 chrX 137986771 137986857 -38987283 + Charlie7 DNA MER1_type 2526 2612 0 481 278 133 6 chrX 137986960 137987133 -38987007 + MIR SINE MIR 18 212 -50 2451 170 19 42 chrX 137987290 137987546 -38986594 - L1MB7 LINE L1 -47 6137 5877 2147 127 7 0 chrX 137987546 137987854 -38986286 - AluSq SINE Alu -3 310 1 2451 170 19 42 chrX 137987854 137987934 -38986206 - L1MB7 LINE L1 -307 5877 5797 1529 178 0 11 chrX 137987934 137988204 -38985936 - AluJb SINE Alu -17 295 29 2451 170 19 42 chrX 137988204 137988386 -38985754 - L1MB7 LINE L1 -387 5797 5630 2454 70 0 0 chrX 137988386 137988685 -38985455 + AluSg SINE Alu 1 299 -11 2451 170 19 42 chrX 137988685 137988730 -38985410 - L1MB7 LINE L1 -554 5630 5585 835 316 38 24 chrX 137989001 137989476 -38984664 + MER115 DNA AcHobo 24 531 -162 2257 121 0 3 chrX 137990344 137990651 -38983489 - AluSq SINE Alu -7 306 1 254 321 0 24 chrX 137990833 137990887 -38983253 - MIR3 SINE MIR -5 203 150 2249 85 6 25 chrX 137990887 137991205 -38982935 + AluSx SINE Alu 1 312 0 254 321 0 24 chrX 137991205 137991234 -38982906 - MIR3 SINE MIR -58 150 122 665 124 39 65 chrX 137991586 137991642 -38982498 - L1MA9 LINE L1 0 6312 6256 1939 152 0 13 chrX 137991642 137991945 -38982195 + AluJo SINE Alu 1 299 -13 665 124 39 65 chrX 137991945 137992041 -38982099 - L1MA9 LINE L1 -56 6256 6164 313 275 25 0 chrX 137992618 137992698 -38981442 + L3 LINE CR1 845 926 -651 195 282 191 0 chrX 137993230 137993340 -38980800 + L3 LINE CR1 981 1111 -466 887 213 0 0 chrX 137993344 137993518 -38980622 + FRAM SINE Alu 1 174 -2 382 246 88 18 chrX 137993682 137993796 -38980344 + L2 LINE L2 3175 3296 -17 186 43 0 0 chrX 137993796 137993819 -38980321 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 505 280 0 8 chrX 137994241 137994359 -38979781 - MIR SINE MIR -118 144 28 2162 91 56 0 chrX 137994470 137994757 -38979383 + AluSg SINE Alu 1 303 -7 821 278 31 0 chrX 137994845 137995081 -38979059 + MIR SINE MIR 5 248 -14 1167 116 6 0 chrX 137995511 137995675 -38978465 + AluSg/x SINE Alu 132 296 -14 795 175 84 7 chrX 137995687 137995841 -38978299 + FRAM SINE Alu 1 166 0 227 136 17 0 chrX 137998212 137998271 -38975869 + A-rich Low_complexity Low_complexity 1 60 0 239 257 168 10 chrX 137998545 137998646 -38975494 + MIR3 SINE MIR 4 120 -88 219 262 66 0 chrX 138001381 138001442 -38972698 - MIR SINE MIR -113 149 85 202 333 24 63 chrX 138002482 138002608 -38971532 - MIR SINE MIR -10 252 132 15517 161 16 13 chrX 138003550 138007622 -38966518 + L1PA14 LINE L1 2059 6144 -17 21 43 0 22 chrX 138007641 138007655 -38966485 + AT_rich Low_complexity Low_complexity 1 14 -31 4719 95 17 1 chrX 138007655 138008351 -38965789 + L1MA1 LINE L1 5596 6302 0 21 43 0 22 chrX 138008351 138008382 -38965758 + AT_rich Low_complexity Low_complexity 14 45 0 200 33 0 33 chrX 138008678 138008708 -38965432 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 9565 175 27 84 chrX 138008708 138009055 -38965085 - L1PB1 LINE L1 -11 6856 6490 270 56 0 0 chrX 138009055 138009091 -38965049 + (TG)n Simple_repeat Simple_repeat 2 37 0 9565 175 27 84 chrX 138009091 138011548 -38962592 - L1PB1 LINE L1 -377 6490 3892 2014 108 26 92 chrX 138011548 138011869 -38962271 + THE1B LTR MaLR 1 293 -71 3186 41 0 3 chrX 138011869 138012258 -38961882 + L1PA6 LINE L1 5767 6154 0 2014 108 26 92 chrX 138012258 138012326 -38961814 + THE1B LTR MaLR 293 364 0 9565 175 27 84 chrX 138012326 138012665 -38961475 - L1PB1 LINE L1 -2975 3892 3535 2273 107 3 7 chrX 138012665 138012975 -38961165 - AluSg SINE Alu -1 309 1 9565 175 27 84 chrX 138012975 138014147 -38959993 - L1PB1 LINE L1 -3332 3535 2554 244 57 0 0 chrX 138014147 138014182 -38959958 - Alu SINE Alu -161 140 106 9565 175 27 84 chrX 138014182 138015353 -38958787 - L1PB1 LINE L1 -4313 2554 1317 2958 98 96 14 chrX 138015357 138015847 -38958293 - L1PB1 LINE L1 -5700 1163 634 973 199 0 0 chrX 138015847 138016043 -38958097 - L1PB1 LINE L1 -6667 196 1 254 196 0 0 chrX 138016176 138016227 -38957913 + L1M4 LINE L1 2785 2835 -3311 323 305 0 25 chrX 138016227 138016345 -38957795 - L1MC4 LINE L1 -1314 6728 6614 423 312 0 0 chrX 138016364 138016537 -38957603 + (TA)n Simple_repeat Simple_repeat 2 174 0 273 340 0 0 chrX 138016548 138016695 -38957445 + (TA)n Simple_repeat Simple_repeat 2 148 0 244 259 47 0 chrX 138016697 138016782 -38957358 - L1MC4 LINE L1 -1339 6703 6615 242 282 0 0 chrX 138016821 138016906 -38957234 - L1MC4 LINE L1 -1343 6699 6615 303 318 0 0 chrX 138016933 138017018 -38957122 + L1MC4 LINE L1 6614 6698 -1344 * 329 299 0 0 chrX 138016955 138017042 -38957098 - L1MC4 LINE L1 -1341 6701 6615 303 318 0 0 chrX 138017035 138017120 -38957020 + L1MC4 LINE L1 6614 6698 -1344 * 329 299 0 0 chrX 138017057 138017144 -38956996 - L1MC4 LINE L1 -1341 6701 6615 228 247 47 0 chrX 138017162 138017247 -38956893 - L1MC4 LINE L1 -1340 6702 6614 279 320 0 0 chrX 138017254 138017376 -38956764 + (TA)n Simple_repeat Simple_repeat 2 123 0 225 247 0 43 chrX 138017380 138017473 -38956667 - L1MC4 LINE L1 -1339 6703 6615 291 234 0 0 chrX 138017475 138017552 -38956588 + (TA)n Simple_repeat Simple_repeat 1 77 0 309 178 0 119 chrX 138017552 138017653 -38956487 - L1MC4 LINE L1 -1339 6703 6615 532 177 21 54 chrX 138017667 138017853 -38956287 + (TA)n Simple_repeat Simple_repeat 1 180 0 329 245 0 53 chrX 138017854 138017948 -38956192 - L1MC4 LINE L1 -1339 6703 6615 * 338 284 11 0 chrX 138017933 138018021 -38956119 + L1MC4 LINE L1 6614 6702 -1340 334 276 23 0 chrX 138017980 138018067 -38956073 - L1MC4 LINE L1 -1339 6703 6615 * 321 315 0 0 chrX 138018060 138018149 -38955991 + L1MC4 LINE L1 6614 6702 -1340 * 323 315 0 0 chrX 138018116 138018205 -38955935 - L1MC4 LINE L1 -1339 6703 6615 903 204 84 21 chrX 138018274 138018608 -38955532 + L1ME2 LINE L1 2844 3198 -2948 311 216 27 162 chrX 138018611 138018759 -38955381 + L1ME2 LINE L1 4178 4305 -1841 1520 248 81 36 chrX 138018760 138019281 -38954859 - MLT1E LTR MaLR 0 593 50 3376 101 69 0 chrX 138019306 138019801 -38954339 - MER1A DNA MER1_type 0 529 1 2398 200 15 77 chrX 138019818 138020411 -38953729 + L1ME2 LINE L1 5484 6033 -131 1826 153 0 36 chrX 138020411 138020719 -38953421 - AluJb SINE Alu -5 307 11 2398 200 15 77 chrX 138020719 138020791 -38953349 + L1ME2 LINE L1 6033 6108 -56 204 40 0 0 chrX 138020796 138020821 -38953319 + (TA)n Simple_repeat Simple_repeat 2 26 0 313 309 0 21 chrX 138020821 138020915 -38953225 - L1MC4 LINE L1 -1339 6703 6612 270 247 22 34 chrX 138020937 138021026 -38953114 + MARNA DNA Mariner 256 343 -243 550 280 188 53 chrX 138021427 138021461 -38952679 + L2 LINE L2 2884 2912 -401 536 0 0 15 chrX 138021461 138021526 -38952614 + (TTTTA)n Simple_repeat Simple_repeat 2 65 0 550 280 188 53 chrX 138021526 138021805 -38952335 + L2 LINE L2 2912 3259 -54 219 114 0 0 chrX 138021805 138021840 -38952300 + (TTGG)n Simple_repeat Simple_repeat 2 36 0 550 280 188 53 chrX 138021840 138021903 -38952237 + L2 LINE L2 3259 3312 -1 544 184 61 11 chrX 138023153 138023323 -38950817 + MIR SINE MIR 9 261 -1 7859 11 2 0 chrX 138024116 138025657 -38948483 - L1PA3 LINE L1 0 6155 4606 1365 227 87 16 chrX 138026021 138026391 -38947749 - MSTD LTR MaLR 0 396 1 462 228 0 0 chrX 138028440 138028532 -38945608 + MIR SINE MIR 14 105 -157 1340 171 51 28 chrX 138028600 138028639 -38945501 - MLT2B1 LTR ERVL 0 414 377 725 65 9 0 chrX 138028639 138028747 -38945393 + (TAGA)n Simple_repeat Simple_repeat 2 110 0 1340 171 51 28 chrX 138028747 138029101 -38945039 - MLT2B1 LTR ERVL -37 377 1 201 355 0 0 chrX 138029125 138029187 -38944953 + MIR SINE MIR 122 183 -79 2228 221 128 14 chrX 138029194 138029558 -38944582 + LTR50 LTR ERVL 3 324 -471 2172 144 27 11 chrX 138029558 138029927 -38944213 + THE1C LTR MaLR 1 375 0 2228 221 128 14 chrX 138029927 138030274 -38943866 + LTR50 LTR ERVL 324 795 0 299 311 0 39 chrX 138030278 138030381 -38943759 - MIR SINE MIR -4 258 160 597 250 82 35 chrX 138030439 138030695 -38943445 - LTR16C LTR ERVL 0 491 224 273 200 0 33 chrX 138030883 138030943 -38943197 + L2 LINE L2 3251 3308 -5 195 250 0 23 chrX 138031195 138031239 -38942901 - MIR SINE MIR -163 99 57 892 320 206 29 chrX 138031343 138032476 -38941664 - L2 LINE L2 -1611 1703 371 310 343 25 80 chrX 138032950 138033224 -38940916 - L2 LINE L2 -2 3270 3012 266 0 29 0 chrX 138033243 138033277 -38940863 + (TAA)n Simple_repeat Simple_repeat 3 37 0 618 270 84 46 chrX 138033295 138033532 -38940608 - MIR SINE MIR 0 262 17 422 184 0 0 chrX 138033660 138033736 -38940404 - MLT1C LTR MaLR 0 467 392 6394 124 11 7 chrX 138033736 138034833 -38939307 + L1MA3 LINE L1 5205 6305 0 1884 192 35 17 chrX 138034853 138035108 -38939032 - MLT1C LTR MaLR -54 413 147 2735 177 4 53 chrX 138035108 138035650 -38938490 - MLT2B2 LTR ERVL 0 515 1 1884 192 35 17 chrX 138035650 138035800 -38938340 - MLT1C LTR MaLR -320 147 1 422 219 141 31 chrX 138035800 138035928 -38938212 - MIR SINE MIR -100 162 21 489 301 62 34 chrX 138036150 138036359 -38937781 - MIR SINE MIR -34 228 14 201 39 0 0 chrX 138038196 138038222 -38935918 + (CA)n Simple_repeat Simple_repeat 2 27 0 225 172 149 46 chrX 138038477 138038564 -38935576 - MIR SINE MIR -68 140 45 326 215 0 0 chrX 138038622 138038687 -38935453 + MER5C DNA MER1_type 12 76 -248 518 278 27 32 chrX 138039131 138039318 -38934822 + LTR33A LTR ERVL 2 187 -336 428 227 0 0 chrX 138039324 138039399 -38934741 - MER81 DNA DNA -1 113 39 954 216 61 64 chrX 138039408 138039750 -38934390 + LTR33A LTR ERVL 182 522 -1 315 202 48 58 chrX 138039751 138039855 -38934285 + MIR SINE MIR 160 262 0 235 263 92 0 chrX 138039866 138039942 -38934198 - MIR SINE MIR -6 256 174 466 269 4 92 chrX 138040203 138040441 -38933699 + MIR SINE MIR 2 218 -44 433 312 50 37 chrX 138040501 138040719 -38933421 - L2 LINE L2 -180 3092 2872 1414 171 35 123 chrX 138040957 138041379 -38932761 + L1ME3A LINE L1 5718 6102 -68 410 299 45 0 chrX 138042103 138042237 -38931903 + L2 LINE L2 2566 2705 -609 735 138 9 9 chrX 138042260 138042376 -38931764 - AluJo SINE Alu -176 136 21 435 333 31 31 chrX 138042390 138042612 -38931528 + L2 LINE L2 2737 2958 -356 584 311 29 16 chrX 138042908 138042943 -38931197 + MIR SINE MIR 2 35 -227 2343 72 10 3 chrX 138042943 138043235 -38930905 + AluSc SINE Alu 1 294 -15 584 311 29 16 chrX 138043235 138043443 -38930697 + MIR SINE MIR 35 248 -14 186 43 0 0 chrX 138043554 138043577 -38930563 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1724 153 20 27 chrX 138043613 138043913 -38930227 + AluJb SINE Alu 1 298 -14 420 260 47 41 chrX 138043975 138044144 -38929996 + MIR SINE MIR 93 262 0 346 79 92 53 chrX 138045374 138045450 -38928690 + L1ME4a LINE L1 6042 6120 -1 234 0 0 0 chrX 138046769 138046795 -38927345 + (GA)n Simple_repeat Simple_repeat 2 27 0 246 210 331 0 chrX 138046824 138046948 -38927192 + MIR SINE MIR 83 247 -15 505 271 44 59 chrX 138047057 138047260 -38926880 + MIR SINE MIR 1 200 -62 1768 212 32 43 chrX 138047276 138047743 -38926397 - Charlie4a DNA MER1_type -8 500 39 557 214 24 56 chrX 138047901 138048027 -38926113 - MER58A DNA MER1_type 0 122 1 2146 52 8 0 chrX 138048041 138048308 -38925832 - L1PA8 LINE L1 0 6172 5904 2246 112 3 0 chrX 138048955 138049259 -38924881 + AluSp SINE Alu 1 305 -8 1705 175 3 28 chrX 138050563 138050854 -38923286 - AluJo SINE Alu -28 284 1 293 270 0 14 chrX 138051093 138051167 -38922973 - MLT1I LTR MaLR -238 171 99 206 275 43 0 chrX 138051523 138051592 -38922548 + L2 LINE L2 2377 2448 -866 279 303 13 71 chrX 138051594 138051655 -38922485 + L2 LINE L2 2829 2892 -422 2459 90 0 3 chrX 138051655 138051965 -38922175 - AluSx SINE Alu -3 309 1 279 303 13 71 chrX 138051965 138052058 -38922082 + L2 LINE L2 2892 2974 -340 226 209 374 0 chrX 138052145 138052236 -38921904 + L2 LINE L2 3189 3313 0 372 36 27 91 chrX 138052433 138052543 -38921597 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 448 258 15 53 chrX 138052738 138052870 -38921270 + L2 LINE L2 3146 3272 0 1782 142 33 33 chrX 138053129 138053432 -38920708 + AluSx SINE Alu 1 303 -9 346 216 29 49 chrX 138053487 138053589 -38920551 - MIR SINE MIR 0 262 163 583 339 20 20 chrX 138055286 138055540 -38918600 + MIR SINE MIR 2 255 -7 344 138 17 0 chrX 138056105 138056163 -38917977 + U7 snRNA snRNA 2 60 -3 187 305 8 47 chrX 138056714 138056842 -38917298 - L2 LINE L2 -33 3280 3158 579 299 79 65 chrX 138057004 138057422 -38916718 - L2 LINE L2 -6 3266 2843 345 329 118 4 chrX 138057544 138057824 -38916316 - L2 LINE L2 -689 2625 2314 5199 219 98 11 chrX 138058350 138059479 -38914661 - L1M4b LINE L1 -5631 1228 1 1148 0 0 0 chrX 138059800 138059925 -38914215 + L1PA3 LINE L1 6031 6155 0 198 343 14 0 chrX 138060099 138060172 -38913968 + MIR SINE MIR 63 136 -126 659 244 124 5 chrX 138060477 138060686 -38913454 + MIR SINE MIR 4 237 -25 1080 217 5 5 chrX 138061714 138061917 -38912223 + MER58A DNA MER1_type 22 224 0 1298 271 67 27 chrX 138062478 138063130 -38911010 + L2 LINE L2 2624 3313 0 528 246 55 44 chrX 138063232 138063415 -38910725 + MIR SINE MIR 20 204 -58 1580 170 28 28 chrX 138063426 138063714 -38910426 - AluJo SINE Alu -24 288 1 334 237 142 24 chrX 138063733 138063902 -38910238 + L1ME4a LINE L1 5883 6071 -50 340 240 160 0 chrX 138064269 138064394 -38909746 + MIR SINE MIR 9 153 -109 672 239 42 0 chrX 138065947 138066114 -38908026 + MIR SINE MIR 76 249 -13 2229 158 17 6 chrX 138066493 138066854 -38907286 + MLT1A1 LTR MaLR 1 365 0 1998 122 4 0 chrX 138067175 138067503 -38906637 - AluSq SINE Alu 0 342 14 243 0 0 0 chrX 138067516 138067543 -38906597 + (ATG)n Simple_repeat Simple_repeat 1 27 0 306 0 0 0 chrX 138067543 138067577 -38906563 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2226 102 0 0 chrX 138067581 138067866 -38906274 - AluSc SINE Alu -24 285 1 252 323 64 41 chrX 138068215 138068435 -38905705 - MIR SINE MIR -3 259 35 229 291 146 0 chrX 138068562 138068665 -38905475 - MIR SINE MIR -7 255 138 209 341 18 24 chrX 138068656 138068823 -38905317 + L2 LINE L2 2152 2317 -997 * 708 271 52 26 chrX 138068830 138069140 -38905000 - L2 LINE L2 -1 3312 2995 681 273 88 52 chrX 138069152 138070079 -38904061 + L2 LINE L2 2319 3313 0 440 280 32 16 chrX 138070100 138070225 -38903915 - MIR SINE MIR -66 142 16 21 0 0 0 chrX 138070983 138071004 -38903136 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chrX 138071400 138071428 -38902712 + (GGA)n Simple_repeat Simple_repeat 3 30 0 244 381 0 0 chrX 138072697 138072794 -38901346 - L2 LINE L2 -14 3299 3203 1642 239 70 25 chrX 138072994 138073480 -38900660 + MLT1J LTR MaLR 3 510 -1 281 296 54 45 chrX 138073559 138073782 -38900358 - L2 LINE L2 -1473 1841 1617 1824 128 0 59 chrX 138073793 138074097 -38900043 + AluSx SINE Alu 11 296 -16 1683 158 21 28 chrX 138074138 138074422 -38899718 + AluJb SINE Alu 1 282 -30 203 245 0 0 chrX 138074591 138074640 -38899500 - L2 LINE L2 -1905 1409 1361 510 240 20 33 chrX 138076311 138076461 -38897679 - MIR SINE MIR -70 192 45 817 185 0 0 chrX 138076515 138076650 -38897490 + AluJo SINE Alu 1 135 -177 1589 190 47 0 chrX 138076650 138076924 -38897216 + AluJb SINE Alu 1 287 -25 1683 164 11 28 chrX 138076973 138077260 -38896880 - AluJo SINE Alu -30 282 1 3269 238 50 23 chrX 138077278 138078066 -38896074 + L1M4 LINE L1 2567 3332 -2814 2020 145 0 7 chrX 138078066 138078362 -38895778 - AluSx SINE Alu -16 296 3 3269 238 50 23 chrX 138078362 138078581 -38895559 + L1M4 LINE L1 3332 3607 -2539 2286 84 7 0 chrX 138078581 138078868 -38895272 + AluSp SINE Alu 21 309 -4 3269 238 50 23 chrX 138078868 138078918 -38895222 + L1M4 LINE L1 3607 3654 -2492 932 79 0 0 chrX 138078919 138079027 -38895113 - MLT1C LTR MaLR 0 467 360 3620 152 2 20 chrX 138079027 138079224 -38894916 + MER41B LTR ERV1 1 200 -435 1705 166 61 28 chrX 138079224 138079586 -38894554 + THE1C LTR MaLR 1 374 -1 10289 108 55 3 chrX 138079588 138081090 -38893050 + THE1C-int LTR MaLR 2 1580 0 2108 142 35 14 chrX 138081090 138081457 -38892683 + THE1C LTR MaLR 1 375 0 3620 152 2 20 chrX 138081457 138081849 -38892291 + MER41B LTR ERV1 199 583 -52 1511 190 88 18 chrX 138081865 138082016 -38892124 - MLT1C LTR MaLR -101 366 227 234 91 0 0 chrX 138082016 138082049 -38892091 + (TG)n Simple_repeat Simple_repeat 2 34 0 1511 190 88 18 chrX 138082049 138082239 -38891901 - MLT1C LTR MaLR -240 227 1 841 201 30 182 chrX 138082239 138082837 -38891303 + L1M4 LINE L1 3653 4159 -1987 1313 193 8 12 chrX 138083212 138083466 -38890674 - MLT1C LTR MaLR -210 257 5 4174 227 55 15 chrX 138083469 138085122 -38889018 + L1MDa LINE L1 2131 3843 -2697 262 204 0 0 chrX 138085119 138085173 -38888967 + L1M4 LINE L1 4763 4816 -1330 * 922 216 157 4 chrX 138085173 138085428 -38888712 - MER58B DNA MER1_type -1 340 47 228 270 0 0 chrX 138086255 138086318 -38887822 + LTR59 LTR ERV1 234 296 -301 331 181 7 181 chrX 138086939 138087094 -38887046 + MER97a DNA MER1_type? 1 128 -766 1680 260 73 15 chrX 138087094 138087763 -38886377 + L1M4 LINE L1 4621 5328 -818 440 295 54 21 chrX 138088518 138088711 -38885429 + MIR3 SINE MIR 3 204 -4 2382 98 3 0 chrX 138088761 138089067 -38885073 + AluSp SINE Alu 1 307 -6 216 0 0 0 chrX 138089110 138089134 -38885006 + (A)n Simple_repeat Simple_repeat 1 24 0 1215 184 0 14 chrX 138089134 138089357 -38884783 + AluJo SINE Alu 93 312 0 200 347 21 11 chrX 138089883 138089978 -38884162 - L3b LINE CR1 -127 1456 1361 2410 79 3 0 chrX 138090297 138090589 -38883551 + AluSp SINE Alu 1 293 -20 252 170 0 0 chrX 138090612 138090665 -38883475 + (TA)n Simple_repeat Simple_repeat 2 54 0 217 297 17 34 chrX 138090682 138090857 -38883283 + (TA)n Simple_repeat Simple_repeat 1 172 0 208 148 82 0 chrX 138090863 138090924 -38883216 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 341 346 55 15 chrX 138091104 138091306 -38882834 + L3 LINE CR1 1021 1230 -347 2340 86 30 0 chrX 138092378 138092679 -38881461 + AluSp SINE Alu 1 310 -3 210 172 172 16 chrX 138092894 138092958 -38881182 - MIR3 SINE MIR -32 176 103 2018 167 16 18 chrX 138093178 138093561 -38880579 + LTR52 LTR ERVL 1 382 -39 286 260 0 0 chrX 138093565 138093642 -38880498 - MIR SINE MIR -82 180 104 308 211 75 0 chrX 138093800 138093885 -38880255 - MIR SINE MIR -97 111 21 285 29 0 0 chrX 138093990 138094024 -38880116 + (TAA)n Simple_repeat Simple_repeat 2 35 0 477 221 118 15 chrX 138094024 138094160 -38879980 - MIR SINE MIR -32 230 81 343 299 9 0 chrX 138094332 138094439 -38879701 - MIR SINE MIR -49 213 106 191 234 21 156 chrX 138095332 138095473 -38878667 + MIR3 SINE MIR 15 136 -72 350 328 16 59 chrX 138095826 138096082 -38878058 - L2 LINE L2 -453 2861 2617 1378 198 139 110 chrX 138096124 138096665 -38877475 + MLT1F1 LTR MaLR 11 567 0 255 337 68 11 chrX 138096773 138096963 -38877177 - L2 LINE L2 -901 2413 2213 220 162 0 0 chrX 138097646 138097683 -38876457 - L3 LINE CR1 -11 1566 1530 2496 75 10 0 chrX 138097974 138098279 -38875861 + AluSg SINE Alu 1 308 -2 256 332 108 34 chrX 138098395 138098690 -38875450 + L2 LINE L2 2555 2871 -443 350 286 24 24 chrX 138098748 138098874 -38875266 + L2 LINE L2 2935 3060 -212 562 272 56 33 chrX 138099600 138099780 -38874360 + MIR3 SINE MIR 6 189 -19 1678 152 18 21 chrX 138099914 138100244 -38873896 - L1MB8 LINE L1 -6 6172 5844 5866 141 44 59 chrX 138100253 138100272 -38873868 - L1MC3 LINE L1 0 7785 7767 1919 162 10 0 chrX 138100272 138100569 -38873571 + AluSx SINE Alu 1 300 -12 5866 141 44 59 chrX 138100569 138101292 -38872848 - L1MC3 LINE L1 -18 7767 7065 213 39 0 0 chrX 138101292 138101318 -38872822 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 5866 141 44 59 chrX 138101318 138101763 -38872377 - L1MC3 LINE L1 -720 7065 6615 2564 181 35 19 chrX 138101755 138102489 -38871651 - L1MB8 LINE L1 -338 5840 5096 * 1080 148 6 44 chrX 138102669 138102851 -38871289 + FAM SINE Alu 1 175 0 404 253 110 22 chrX 138102862 138103044 -38871096 - MIR SINE MIR 0 262 65 330 279 125 15 chrX 138103130 138103266 -38870874 - L2 LINE L2 -7 3306 3156 1169 200 0 22 chrX 138103386 138103611 -38870529 + AluJo SINE Alu 1 220 -92 243 182 0 0 chrX 138103611 138103655 -38870485 + Alu SINE Alu 85 128 -5 323 190 0 0 chrX 138103708 138103766 -38870374 - L2 LINE L2 -335 2978 2921 247 309 89 49 chrX 138103973 138104300 -38869840 - L2 LINE L2 -420 2894 2555 337 275 107 30 chrX 138104913 138105175 -38868965 - L1ME4a LINE L1 -178 5943 5662 264 250 28 56 chrX 138105532 138105640 -38868500 + MIR SINE MIR 45 149 -59 233 56 0 28 chrX 138108611 138108647 -38865493 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 316 260 8 8 chrX 138108925 138109052 -38865088 + (CGG)n Simple_repeat Simple_repeat 2 128 0 22 35 0 0 chrX 138109123 138109152 -38864988 + GC_rich Low_complexity Low_complexity 1 29 0 264 111 0 0 chrX 138109273 138109318 -38864822 + (CGG)n Simple_repeat Simple_repeat 2 46 0 315 0 0 0 chrX 138111901 138111936 -38862204 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chrX 138111935 138111956 -38862184 + (CG)n Simple_repeat Simple_repeat 2 22 0 * 2490 61 0 10 chrX 138113616 138113929 -38860211 + AluSx SINE Alu 1 310 -2 1885 148 18 0 chrX 138118271 138118575 -38855565 + AluJb SINE Alu 1 309 0 400 228 94 59 chrX 138119475 138119677 -38854463 - L2 LINE L2 -111 3202 2994 435 106 0 0 chrX 138119693 138119759 -38854381 + (CAT)n Simple_repeat Simple_repeat 3 68 0 358 265 12 12 chrX 138119835 138119918 -38854222 - MER96 DNA MER1_type? -9 166 84 246 32 0 0 chrX 138120078 138120109 -38854031 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 229 216 98 0 chrX 138120113 138120164 -38853976 - AluJo SINE Alu -20 282 227 944 149 18 42 chrX 138120164 138120332 -38853808 - AluJo SINE Alu -148 164 1 482 111 49 0 chrX 138120338 138120419 -38853721 + MER96 DNA MER1_type? 91 175 0 400 327 40 27 chrX 138120539 138120791 -38853349 + MIR SINE MIR 4 253 -9 22 0 0 0 chrX 138121384 138121406 -38852734 + AT_rich Low_complexity Low_complexity 1 22 0 1682 178 0 32 chrX 138121475 138121789 -38852351 + AluJb SINE Alu 1 304 -8 30 0 0 0 chrX 138121789 138121819 -38852321 + AT_rich Low_complexity Low_complexity 1 30 0 487 162 0 0 chrX 138121853 138121927 -38852213 + AluS SINE Alu 3 76 -236 859 191 0 0 chrX 138121936 138122083 -38852057 + FRAM SINE Alu 23 169 -7 191 250 14 42 chrX 138122083 138122155 -38851985 + MIR SINE MIR 189 258 -4 321 281 0 10 chrX 138123082 138123178 -38850962 + MIR3 SINE MIR 83 177 -31 1833 77 23 4 chrX 138123254 138123513 -38850627 + L1MA1 LINE L1 6039 6302 0 288 263 94 86 chrX 138124189 138124444 -38849696 - L1M4b LINE L1 -6602 257 1 251 274 0 0 chrX 138124639 138124707 -38849433 + MIR SINE MIR 83 142 -66 257 0 104 0 chrX 138124712 138124760 -38849380 + (TTTG)n Simple_repeat Simple_repeat 2 54 0 2153 128 0 0 chrX 138124766 138125072 -38849068 - AluSc SINE Alu -3 306 1 199 353 169 5 chrX 138125827 138126011 -38848129 - L2 LINE L2 -345 2969 2756 239 305 72 18 chrX 138126241 138126408 -38847732 + MIR SINE MIR 37 212 -50 297 0 0 0 chrX 138126693 138126726 -38847414 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 410 222 28 155 chrX 138126730 138126982 -38847158 - L2 LINE L2 -27 3286 3067 309 271 31 10 chrX 138127891 138127987 -38846153 + CT-rich Low_complexity Low_complexity 2 99 0 262 304 69 0 chrX 138128258 138128360 -38845780 + L2 LINE L2 2743 2851 -463 210 301 36 0 chrX 138128368 138128451 -38845689 + L2 LINE L2 2999 3084 -188 22 0 0 0 chrX 138129072 138129094 -38845046 + AT_rich Low_complexity Low_complexity 1 22 0 203 196 65 0 chrX 138129519 138129565 -38844575 + GA-rich Low_complexity Low_complexity 5 53 0 23 0 0 0 chrX 138130911 138130934 -38843206 + AT_rich Low_complexity Low_complexity 1 23 0 570 38 0 25 chrX 138131483 138131562 -38842578 + AluY SINE Alu 234 310 -1 22 35 0 0 chrX 138132312 138132341 -38841799 + AT_rich Low_complexity Low_complexity 1 29 0 2116 113 7 0 chrX 138133348 138133675 -38840465 - AluSx SINE Alu 0 329 1 201 74 0 0 chrX 138134237 138134264 -38839876 + (A)n Simple_repeat Simple_repeat 1 27 0 203 256 0 105 chrX 138134373 138134459 -38839681 + MIR SINE MIR 30 106 -102 535 271 20 13 chrX 138134546 138134697 -38839443 - L1ME3 LINE L1 -7 6155 6004 1666 143 19 8 chrX 138134877 138135143 -38838997 - Tigger3(Golem) DNA MER2_type -1 3028 2760 1831 96 0 16 chrX 138135143 138135393 -38838747 - THE1C LTR MaLR -129 246 1 275 319 39 7 chrX 138135670 138135819 -38838321 - MIR SINE MIR -60 148 29 1017 148 69 35 chrX 138136212 138136414 -38837726 - MER3 DNA MER1_type 0 209 1 772 251 69 13 chrX 138138191 138138422 -38835718 + MIR SINE MIR 4 247 -15 441 260 8 24 chrX 138138778 138138905 -38835235 - MIR SINE MIR -46 216 92 227 186 23 0 chrX 138139121 138139164 -38834976 + GA-rich Low_complexity Low_complexity 1 44 0 366 212 94 0 chrX 138139166 138139251 -38834889 + MER58C DNA MER1_type 123 215 0 602 237 147 6 chrX 138139260 138139416 -38834724 - MER5A DNA MER1_type -2 187 10 287 221 117 13 chrX 138140537 138140614 -38833526 - MIR SINE MIR -81 127 43 2185 127 0 13 chrX 138141198 138141506 -38832634 + AluSx SINE Alu 2 305 -7 21 0 0 0 chrX 138141575 138141596 -38832544 + AT_rich Low_complexity Low_complexity 1 21 0 2778 29 0 0 chrX 138141958 138142266 -38831874 + AluY SINE Alu 1 308 -3 380 179 202 0 chrX 138144108 138144192 -38829948 - L2 LINE L2 0 3313 3213 428 190 13 13 chrX 138144209 138144288 -38829852 - MER81 DNA DNA -32 82 4 329 320 78 0 chrX 138144349 138144477 -38829663 + MIR SINE MIR 42 179 -83 2346 81 7 3 chrX 138144477 138144785 -38829355 - AluY SINE Alu -2 309 1 2352 64 0 3 chrX 138144939 138145275 -38828865 - AluY SINE Alu 0 335 1 339 294 48 62 chrX 138145624 138145770 -38828370 - L2 LINE L2 -6 3266 3123 1081 223 5 0 chrX 138145783 138145994 -38828146 - AluJo SINE Alu -100 212 1 2111 101 0 77 chrX 138146595 138146921 -38827219 - AluSx SINE Alu -11 301 1 592 264 42 0 chrX 138147734 138147878 -38826262 - MIR SINE MIR -44 218 69 2363 97 0 3 chrX 138148609 138148920 -38825220 - AluSg SINE Alu 0 310 1 521 153 0 24 chrX 138149674 138149759 -38824381 + FLAM_C SINE Alu 54 136 -7 533 248 25 45 chrX 138149787 138149944 -38824196 - L2 LINE L2 -2 3311 3158 706 226 178 42 chrX 138150485 138150594 -38823546 - L1ME4a LINE L1 -4 6117 6024 869 254 6 0 chrX 138150594 138150771 -38823369 + MER45A DNA AcHobo 1 178 0 706 226 178 42 chrX 138150771 138150998 -38823142 - L1ME4a LINE L1 -97 6024 5735 246 185 0 37 chrX 138151020 138151074 -38823066 + MIR SINE MIR 211 262 0 522 278 35 14 chrX 138152206 138152350 -38821790 + L2 LINE L2 3122 3268 -4 211 318 193 0 chrX 138153144 138153232 -38820908 - L2 LINE L2 -16 3256 3152 374 320 62 77 chrX 138153331 138153712 -38820428 - L2 LINE L2 -143 3129 2751 1124 209 93 27 chrX 138153732 138154062 -38820078 + L1MB8 LINE L1 5798 6138 -40 2543 61 0 10 chrX 138154076 138154387 -38819753 + AluY SINE Alu 1 308 -3 572 227 43 18 chrX 138155883 138156046 -38818094 + MIR SINE MIR 70 236 -26 481 294 91 0 chrX 138156154 138156341 -38817799 + MIR SINE MIR 2 205 -57 187 197 92 118 chrX 138156818 138156894 -38817246 + MIR3 SINE MIR 118 191 -17 204 333 0 0 chrX 138158173 138158239 -38815901 + MIR3 SINE MIR 138 203 -5 2328 153 7 12 chrX 138158506 138158910 -38815230 + L1MB7 LINE L1 5764 6165 -19 297 239 75 0 chrX 138158916 138158983 -38815157 - MER117 DNA MER1_type -111 86 15 184 374 108 25 chrX 138159385 138159588 -38814552 - L2 LINE L2 -76 3196 2977 219 88 0 0 chrX 138159817 138159851 -38814289 + (T)n Simple_repeat Simple_repeat 1 34 0 192 298 0 0 chrX 138159914 138159961 -38814179 - L2 LINE L2 -674 2640 2594 1139 240 88 3 chrX 138159976 138160272 -38813868 + MLT1E1 LTR MaLR 334 654 0 1332 276 73 20 chrX 138160283 138160519 -38813621 + L1M4 LINE L1 3920 4142 -2004 207 0 0 0 chrX 138160519 138160542 -38813598 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1332 276 73 20 chrX 138160542 138160863 -38813277 + L1M4 LINE L1 4142 4507 -1639 920 185 7 0 chrX 138160864 138161015 -38813125 + MLT1A1 LTR MaLR 136 287 -78 285 269 13 13 chrX 138161044 138161122 -38813018 + L1M3c LINE L1 2 79 -6062 2244 124 28 132 chrX 138161626 138161678 -38812462 + L1MA9 LINE L1 5620 5676 -636 2188 72 22 4 chrX 138161678 138161988 -38812152 + AluSg SINE Alu 1 315 0 2244 124 28 132 chrX 138161988 138162474 -38811666 + L1MA9 LINE L1 5676 6103 -209 898 217 37 0 chrX 138162474 138162663 -38811477 + AluJo SINE Alu 87 282 -30 1163 160 42 0 chrX 138162685 138162898 -38811242 + L1MA9 LINE L1 6091 6312 0 2600 242 66 17 chrX 138162899 138163764 -38810376 + L1M4 LINE L1 4495 5401 -745 2153 115 24 0 chrX 138163773 138164061 -38810079 + AluSg SINE Alu 1 295 -15 305 103 0 0 chrX 138164061 138164137 -38810003 + Alu SINE Alu 244 319 0 1295 292 67 26 chrX 138164362 138165066 -38809074 + L2 LINE L2 2582 3313 0 228 305 0 0 chrX 138165084 138165143 -38808997 - L2 LINE L2 -4 3268 3210 2044 282 88 34 chrX 138166052 138167186 -38806954 - L2 LINE L2 0 3313 2113 752 112 9 0 chrX 138167252 138167359 -38806781 + MLT1A1 LTR MaLR 1 108 -257 1939 140 42 79 chrX 138167845 138168223 -38805917 + THE1B LTR MaLR 1 364 0 721 296 52 9 chrX 138168677 138168910 -38805230 + MIR SINE MIR 2 244 -18 853 196 75 6 chrX 138168927 138169100 -38805040 - MER58A DNA MER1_type 0 224 40 1351 187 48 13 chrX 138169104 138169414 -38804726 - MER33 DNA MER1_type -3 321 1 408 345 1 8 chrX 138169785 138169932 -38804208 + MIR SINE MIR 20 141 -67 1411 183 8 12 chrX 138170417 138170674 -38803466 + AluJo SINE Alu 47 302 -10 275 169 119 0 chrX 138170893 138170952 -38803188 + MER103 DNA DNA 35 100 -66 1083 215 115 23 chrX 138170952 138171213 -38802927 + MSTD LTR MaLR 1 285 -111 979 205 12 0 chrX 138171206 138171377 -38802763 + MLT2B3 LTR ERVL 317 489 -65 * 753 109 0 0 chrX 138171344 138171445 -38802695 + MSTD LTR MaLR 294 394 -2 * 315 243 173 17 chrX 138171575 138171695 -38802445 - MIR SINE MIR -64 144 34 753 204 5 102 chrX 138172118 138172314 -38801826 + MER5A DNA MER1_type 10 186 -3 2672 139 54 10 chrX 138172381 138172791 -38801349 - MSTA LTR MaLR 0 428 1 6363 103 8 18 chrX 138172954 138173761 -38800379 + L1PA14 LINE L1 4678 5482 -679 2208 95 20 3 chrX 138173761 138174055 -38800085 + AluSq SINE Alu 1 299 -14 6363 103 8 18 chrX 138174055 138174725 -38799415 + L1PA14 LINE L1 5482 6157 -4 359 258 65 0 chrX 138175102 138175215 -38798925 + MIR SINE MIR 35 153 -65 443 282 31 77 chrX 138175235 138175430 -38798710 - MIR3 SINE MIR -17 191 6 2202 125 0 3 chrX 138175826 138176131 -38798009 + AluSx SINE Alu 1 304 -8 10217 87 4 6 chrX 138176132 138178212 -38795928 + L1PA7 LINE L1 4075 6153 -1 207 253 0 149 chrX 138178300 138178387 -38795753 - MIR SINE MIR -1 261 188 551 165 17 26 chrX 138178466 138178581 -38795559 + MER103 DNA DNA 53 166 0 753 232 63 0 chrX 138178641 138178831 -38795309 - MIR SINE MIR -59 203 2 739 275 49 24 chrX 138178844 138179091 -38795049 - MIR SINE MIR 0 262 10 1827 183 14 21 chrX 138179341 138179699 -38794441 - MLT1A1 LTR MaLR 0 365 16 2970 137 31 9 chrX 138179699 138180153 -38793987 - MER88 LTR ERVL 0 464 1 1827 183 14 21 chrX 138180153 138180164 -38793976 - MLT1A1 LTR MaLR -349 16 6 347 274 21 11 chrX 138180800 138180895 -38793245 - L2 LINE L2 -43 3229 3134 2172 267 107 25 chrX 138181337 138182232 -38791908 + L2 LINE L2 2032 3008 -264 200 171 0 0 chrX 138182372 138182407 -38791733 + L2 LINE L2 3180 3214 -99 398 283 72 37 chrX 138182729 138182970 -38791170 + MIR SINE MIR 3 259 -3 2571 104 11 0 chrX 138183054 138183409 -38790731 - L1PB2 LINE L1 0 6151 5793 617 292 59 10 chrX 138183412 138183614 -38790526 + MARNA DNA Mariner 255 466 -120 263 346 0 0 chrX 138183544 138183625 -38790515 - MARNA DNA Mariner -398 188 108 * 248 215 92 0 chrX 138184988 138185053 -38789087 - MIR SINE MIR -14 248 178 911 277 54 13 chrX 138185053 138185367 -38788773 + MER46C DNA MER2_type 1 327 -11 557 299 0 7 chrX 138185372 138185526 -38788614 - MIR SINE MIR -106 156 4 23 0 0 0 chrX 138185958 138185981 -38788159 + AT_rich Low_complexity Low_complexity 1 23 0 992 164 0 53 chrX 138187470 138187659 -38786481 + MER97a DNA MER1_type? 1 179 -715 225 280 0 27 chrX 138188509 138188584 -38785556 - Charlie4 DNA MER1_type -6 1955 1883 1003 149 26 140 chrX 138188722 138189030 -38785110 - ORSL DNA AcHobo 0 275 3 386 299 86 40 chrX 138189141 138189315 -38784825 + MIR3 SINE MIR 17 198 -10 469 284 49 39 chrX 138189558 138189762 -38784378 + MARNA DNA Mariner 18 223 -363 207 0 0 0 chrX 138189832 138189855 -38784285 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 210 71 0 0 chrX 138189996 138190024 -38784116 + (CAG)n Simple_repeat Simple_repeat 2 29 0 15558 165 10 19 chrX 138190052 138190510 -38783630 + L1M1 LINE L1 2318 2779 -3525 1531 221 0 7 chrX 138190510 138190804 -38783336 + AluJb SINE Alu 1 292 -20 15558 165 10 19 chrX 138190804 138193670 -38780470 + L1M1 LINE L1 2779 5610 -694 553 297 96 14 chrX 138194578 138194787 -38779353 + MIR SINE MIR 21 246 -16 477 34 0 0 chrX 138195007 138195066 -38779074 + (TG)n Simple_repeat Simple_repeat 2 60 0 2233 99 0 29 chrX 138195157 138195470 -38778670 + AluSx SINE Alu 1 304 -8 2082 131 3 0 chrX 138195470 138195761 -38778379 + AluSq SINE Alu 1 292 -21 1046 132 59 0 chrX 138196133 138196285 -38777855 + AluSq SINE Alu 128 288 -25 1739 293 96 28 chrX 138196298 138197218 -38776922 + L2 LINE L2 2215 3206 -107 2605 84 24 11 chrX 138197436 138197806 -38776334 - THE1C LTR MaLR 0 375 1 278 256 51 34 chrX 138198073 138198190 -38775950 - HAL1 LINE L1 -11 2496 2378 24 32 0 0 chrX 138198293 138198324 -38775816 + AT_rich Low_complexity Low_complexity 1 31 0 1051 258 154 29 chrX 138198842 138199257 -38774883 - L2 LINE L2 -9 3304 2838 229 269 0 0 chrX 138199660 138199712 -38774428 + GA-rich Low_complexity Low_complexity 4 55 0 345 333 35 7 chrX 138199973 138200117 -38774023 + L3 LINE CR1 306 453 -1124 579 308 197 17 chrX 138200133 138200484 -38773656 + L3 LINE CR1 575 988 -589 278 364 0 0 chrX 138200524 138200612 -38773528 + L2 LINE L2 3201 3288 -25 426 344 80 0 chrX 138200614 138200765 -38773375 + L3 LINE CR1 1015 1177 -400 959 291 193 2 chrX 138200768 138201187 -38772953 - L2 LINE L2 -4 3309 2811 734 274 13 93 chrX 138201264 138201640 -38772500 + L3 LINE CR1 1230 1575 -2 1223 280 45 49 chrX 138202843 138203335 -38770805 + L1MC4a LINE L1 5327 5818 -1990 2213 67 70 0 chrX 138203335 138203620 -38770520 + AluSp SINE Alu 1 305 -8 1223 280 45 49 chrX 138203620 138203723 -38770417 + L1MC4a LINE L1 5818 5920 -1888 201 258 0 0 chrX 138203732 138203798 -38770342 + (TA)n Simple_repeat Simple_repeat 2 67 0 259 284 34 0 chrX 138203805 138203893 -38770247 + L1ME4a LINE L1 5935 6025 -96 663 263 42 33 chrX 138203952 138204157 -38769983 - MIR SINE MIR -1 261 52 255 220 0 0 chrX 138204360 138204419 -38769721 + L2 LINE L2 764 822 -2492 819 149 69 35 chrX 138204426 138204600 -38769540 - Tigger6a DNA MER2_type 0 1083 904 1808 156 0 7 chrX 138204600 138204888 -38769252 + AluJo SINE Alu 3 288 -24 189 0 0 0 chrX 138204893 138204914 -38769226 + (TA)n Simple_repeat Simple_repeat 2 22 0 46 89 0 0 chrX 138204914 138205037 -38769103 + AT_rich Low_complexity Low_complexity 1 123 0 4539 158 33 34 chrX 138205088 138205989 -38768151 - Tigger6a DNA MER2_type -167 916 17 1140 238 104 70 chrX 138205998 138206036 -38768104 + L2 LINE L2 2660 2695 -618 1605 193 7 33 chrX 138206036 138206342 -38767798 - AluJo SINE Alu -12 300 3 1140 238 104 70 chrX 138206342 138206962 -38767178 + L2 LINE L2 2695 3313 0 374 305 49 59 chrX 138208747 138208842 -38765298 + MLT1K LTR MaLR 125 219 -369 2097 131 39 112 chrX 138208842 138209308 -38764832 - MSTB1 LTR MaLR 0 432 1 374 305 49 59 chrX 138209308 138209415 -38764725 + MLT1K LTR MaLR 219 325 -263 302 253 13 13 chrX 138209580 138209659 -38764481 + MLT1K LTR MaLR 509 587 -1 1951 99 4 4 chrX 138209701 138209964 -38764176 + AluSp SINE Alu 1 263 -50 355 281 25 44 chrX 138209992 138210152 -38763988 + L1MC4a LINE L1 5768 5924 -1884 233 302 23 54 chrX 138210238 138210367 -38763773 + L1MC4a LINE L1 6054 6178 -1630 277 258 183 0 chrX 138210387 138210507 -38763633 - Tigger8 DNA MER2_type -93 573 432 1659 223 74 8 chrX 138210940 138211415 -38762725 + Charlie4a DNA MER1_type 2 507 -1 1256 221 70 66 chrX 138211415 138211962 -38762178 - MLT1E LTR MaLR -3 590 1 529 318 50 20 chrX 138212045 138212243 -38761897 - MIR SINE MIR -12 250 47 222 171 0 0 chrX 138212293 138212334 -38761806 + (CATA)n Simple_repeat Simple_repeat 3 43 0 245 267 0 0 chrX 138212336 138212426 -38761714 - L1MC4 LINE L1 -1339 6703 6614 20538 108 5 8 chrX 138212457 138216328 -38757812 - L1PA6 LINE L1 -15 6139 2272 3035 210 35 68 chrX 138216328 138216371 -38757769 + L1MB8 LINE L1 4095 4138 -2008 207 0 0 0 chrX 138216371 138216394 -38757746 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 3035 210 35 68 chrX 138216394 138216635 -38757505 + L1MB8 LINE L1 4138 4386 -1760 4498 157 24 6 chrX 138216635 138216965 -38757175 + L1MA7 LINE L1 5450 5772 -519 441 0 0 0 chrX 138216965 138217014 -38757126 + (CA)n Simple_repeat Simple_repeat 2 50 0 4498 157 24 6 chrX 138217014 138217501 -38756639 + L1MA7 LINE L1 5772 6282 -9 2219 116 0 0 chrX 138217505 138217799 -38756341 - AluSx SINE Alu -17 295 2 3035 210 35 68 chrX 138217799 138218464 -38755676 + L1MB8 LINE L1 4389 5018 -1128 898 209 0 0 chrX 138218468 138218621 -38755519 + FRAM SINE Alu 1 152 -24 1619 195 70 34 chrX 138218628 138220092 -38754048 + L1MB8 LINE L1 5009 6178 0 232 284 84 87 chrX 138220089 138220600 -38753540 + L1MC/D LINE L1 4175 4685 -1461 * 767 154 23 0 chrX 138220600 138220730 -38753410 + FLAM_C SINE Alu 1 133 0 232 284 84 87 chrX 138220730 138220876 -38753264 + L1MC/D LINE L1 4685 4830 -1316 1674 158 0 14 chrX 138220959 138221237 -38752903 - AluJb SINE Alu -15 297 24 344 313 9 27 chrX 138221387 138221499 -38752641 + L2 LINE L2 2908 3017 -296 251 228 360 22 chrX 138221472 138221608 -38752532 + L2 LINE L2 2042 2223 -1091 * 2004 228 24 9 chrX 138221616 138222082 -38752058 + L2 LINE L2 2372 2844 -470 496 252 41 73 chrX 138222128 138222346 -38751794 + L2 LINE L2 3103 3313 0 * 980 279 67 9 chrX 138222345 138222660 -38751480 + L2 LINE L2 2980 3312 -1 316 224 128 31 chrX 138222681 138222877 -38751263 + L1MC/D LINE L1 5260 5474 -2334 246 61 61 0 chrX 138222898 138222947 -38751193 + (TA)n Simple_repeat Simple_repeat 1 52 0 1021 245 15 27 chrX 138222976 138223237 -38750903 - MIR SINE MIR 0 262 5 975 177 17 2 chrX 138223313 138223509 -38750631 - L1P5 LINE L1 -582 5572 5377 2515 235 52 21 chrX 138223513 138223880 -38750260 - L1M4 LINE L1 -823 5323 4969 1955 134 3 26 chrX 138223880 138224186 -38749954 - AluSx SINE Alu -9 303 5 2515 235 52 21 chrX 138224186 138224601 -38749539 - L1M4 LINE L1 -1177 4969 4454 479 379 49 0 chrX 138224630 138224873 -38749267 + L2 LINE L2 2403 2657 -657 4482 208 51 31 chrX 138224910 138225954 -38748186 - L1MD2 LINE L1 -2 6357 5335 213 39 0 0 chrX 138225954 138225980 -38748160 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1711 118 0 0 chrX 138225980 138226208 -38747932 - AluSg1 SINE Alu -27 282 55 4482 208 51 31 chrX 138226208 138226512 -38747628 - L1MD2 LINE L1 -1023 5336 4996 1279 194 0 35 chrX 138226549 138226781 -38747359 + AluJo SINE Alu 1 224 -88 2434 256 58 23 chrX 138226810 138227677 -38746463 - L1MD2 LINE L1 -1136 5010 4114 463 220 34 0 chrX 138227695 138227813 -38746327 - L1MD2 LINE L1 -2236 3910 3789 4383 31 0 0 chrX 138227954 138228468 -38745672 + L1PA3 LINE L1 5639 6152 -3 196 307 141 40 chrX 138228490 138229080 -38745060 + L2 LINE L2 1596 2310 -1004 436 317 126 11 chrX 138229105 138229288 -38744852 - MIR SINE MIR -16 246 43 706 229 0 11 chrX 138229311 138229486 -38744654 + L1MA10 LINE L1 6161 6333 -1 399 343 62 35 chrX 138229542 138229880 -38744260 + L2 LINE L2 2328 2674 -640 232 286 83 0 chrX 138229895 138229979 -38744161 + MIR3 SINE MIR 95 185 -23 2416 92 0 0 chrX 138230064 138230367 -38743773 + AluSx SINE Alu 2 304 -8 210 167 136 45 chrX 138231750 138231816 -38742324 + MIR SINE MIR 73 144 -118 543 339 83 22 chrX 138231821 138232098 -38742042 + L2 LINE L2 2403 2696 -618 3087 178 21 11 chrX 138232103 138232822 -38741318 - L1MB5 LINE L1 -4 7589 6709 * 16618 156 79 12 chrX 138232805 138232832 -38741308 - L1MB5 LINE L1 -4325 3240 3216 768 51 0 0 chrX 138232832 138232930 -38741210 - L1MA1 LINE L1 0 6302 6205 16618 156 79 12 chrX 138232930 138232995 -38741145 - L1MB5 LINE L1 -4349 3216 3157 2252 110 48 20 chrX 138232995 138233349 -38740791 + THE1B LTR MaLR 1 364 0 16618 156 79 12 chrX 138233349 138236278 -38737862 - L1MB5 LINE L1 -4408 3157 14 2915 232 28 13 chrX 138236285 138237061 -38737079 - L1M4 LINE L1 -845 5537 4750 2740 219 63 19 chrX 138237058 138237206 -38736934 - L1MA4 LINE L1 -263 6037 5890 * 4267 222 47 66 chrX 138237206 138237755 -38736385 - L1PA16 LINE L1 -305 5861 5303 198 0 0 0 chrX 138237755 138237777 -38736363 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4267 222 47 66 chrX 138237777 138240578 -38733562 - L1PA16 LINE L1 -863 5303 2639 240 35 0 0 chrX 138240578 138240607 -38733533 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 4267 222 47 66 chrX 138240607 138240748 -38733392 - L1PA16 LINE L1 -3527 2639 2497 3222 248 36 15 chrX 138240772 138241908 -38732232 - L1M4 LINE L1 -4276 2108 854 1542 198 48 40 chrX 138241915 138242314 -38731826 - L1MD2 LINE L1 -381 5978 5577 9019 196 34 16 chrX 138242348 138245274 -38728866 - L1 LINE L1 -2976 3872 892 871 222 0 0 chrX 138245274 138245454 -38728686 - L1MD2 LINE L1 -658 5584 5405 733 175 36 15 chrX 138245455 138245592 -38728548 - MLT1A2 LTR MaLR 0 374 235 * 898 183 46 6 chrX 138245580 138245755 -38728385 + MLT1A2 LTR MaLR 193 374 0 266 137 32 56 chrX 138245755 138245824 -38728316 + L1MB8 LINE L1 6082 6142 -42 2596 45 0 3 chrX 138245824 138246134 -38728006 - AluY SINE Alu -2 309 1 266 137 32 56 chrX 138246134 138246171 -38727969 + L1MB8 LINE L1 6142 6178 -6 848 265 17 8 chrX 138246380 138246614 -38727526 - MIR SINE MIR -4 258 23 399 185 19 6 chrX 138246754 138246838 -38727302 - AluJ/FLAM SINE Alu -240 62 1 1861 205 63 5 chrX 138246841 138247271 -38726869 - L1MC3 LINE L1 -374 5810 5408 535 258 15 155 chrX 138247332 138247603 -38726537 + MIR SINE MIR 19 251 -11 859 143 0 8 chrX 138248045 138248171 -38725969 + FLAM_C SINE Alu 1 125 -18 927 211 57 14 chrX 138248465 138248674 -38725466 + MER58A DNA MER1_type 4 221 -3 1922 132 54 43 chrX 138252698 138253069 -38721071 - THE1C LTR MaLR 0 375 1 873 204 23 12 chrX 138253094 138253266 -38720874 - MER5A DNA MER1_type 0 189 16 819 240 0 6 chrX 138253292 138253471 -38720669 + MER5B DNA MER1_type 1 178 0 678 253 60 6 chrX 138253949 138254115 -38720025 - MER5B DNA MER1_type 0 178 4 391 250 8 4 chrX 138254337 138254473 -38719667 + MER5A DNA MER1_type 4 186 -3 1319 151 9 0 chrX 138254823 138255048 -38719092 + L1MC1 LINE L1 6107 6333 0 1897 239 65 16 chrX 138255055 138255843 -38718297 + L1ME4a LINE L1 2948 3773 -2373 999 244 43 70 chrX 138255843 138256401 -38717739 + MER39 LTR ERV1 1 640 0 424 148 23 31 chrX 138256469 138256597 -38717543 + L1ME4a LINE L1 3830 3956 -2190 17061 185 17 36 chrX 138256651 138259310 -38714830 + L1PA11 LINE L1 687 3252 -3209 3578 73 2 0 chrX 138259310 138259762 -38714378 - MLT2A2 LTR ERVL 0 453 1 17061 185 17 36 chrX 138259762 138261068 -38713072 + L1PA11 LINE L1 3252 4581 -1880 7077 56 1 0 chrX 138261086 138262563 -38711577 - L1PA5 LINE L1 -2 6152 4672 6566 147 15 2 chrX 138262560 138264467 -38709673 + L1PA11 LINE L1 4561 6489 0 * 1014 222 96 4 chrX 138264469 138264739 -38709401 + L1ME4a LINE L1 3953 4247 -1899 * 20949 158 20 15 chrX 138264736 138271850 -38702290 + L1MA2 LINE L1 12 7174 -549 2397 105 0 6 chrX 138271850 138272163 -38701977 + AluSx SINE Alu 1 311 -1 20949 158 20 15 chrX 138272163 138272716 -38701424 + L1MA2 LINE L1 7174 7723 0 2914 243 32 27 chrX 138272723 138273658 -38700482 + L1ME4a LINE L1 4232 5171 -975 418 230 137 14 chrX 138274489 138274628 -38699512 - MIR SINE MIR -11 251 96 424 205 24 0 chrX 138275465 138275548 -38698592 - L2 LINE L2 -2 3270 3186 29972 117 11 61 chrX 138275833 138280797 -38693343 + L1PA8 LINE L1 2 4553 -1619 234 0 0 0 chrX 138280797 138280823 -38693317 + (CAA)n Simple_repeat Simple_repeat 2 27 0 29972 117 11 61 chrX 138280823 138282363 -38691777 + L1PA8 LINE L1 4553 6169 -3 25 0 0 0 chrX 138283267 138283292 -38690848 + AT_rich Low_complexity Low_complexity 1 25 0 571 263 80 42 chrX 138283293 138283506 -38690634 - MIR SINE MIR -1 261 41 4767 169 59 62 chrX 138283911 138284980 -38689160 - Tigger6a DNA MER2_type -17 1066 1 961 279 12 12 chrX 138285029 138285273 -38688867 - MIR SINE MIR -4 258 15 1815 155 3 17 chrX 138285432 138285722 -38688418 + AluJb SINE Alu 1 286 -26 246 81 0 0 chrX 138285722 138285759 -38688381 + (CA)n Simple_repeat Simple_repeat 2 38 0 280 343 42 46 chrX 138285781 138286064 -38688076 + L1P LINE L1 4752 5033 -1113 338 273 11 0 chrX 138286391 138286479 -38687661 + L1ME4a LINE L1 5496 5584 -537 648 217 191 23 chrX 138286593 138286892 -38687248 + L1ME4a LINE L1 5762 6110 -11 2936 95 22 2 chrX 138287559 138287960 -38686180 + MLT2A2 LTR ERVL 1 409 -44 34 0 0 0 chrX 138287963 138287997 -38686143 + AT_rich Low_complexity Low_complexity 1 34 0 319 70 112 0 chrX 138287997 138288056 -38686084 + MLT2A2 LTR ERVL 402 453 0 38429 64 9 14 chrX 138288056 138293710 -38680430 + HERVL-A2-A2 LTR ERVL 1 5654 0 3206 84 34 9 chrX 138293710 138294152 -38679988 + MLT2A2 LTR ERVL 1 453 0 194 326 122 29 chrX 138294201 138294373 -38679767 + L2 LINE L2 2229 2416 -898 207 0 0 0 chrX 138295122 138295145 -38678995 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 346 314 24 47 chrX 138295411 138295707 -38678433 - L1MC4a LINE L1 -1907 5901 5613 312 286 14 20 chrX 138295752 138295982 -38678158 - L1PA8A LINE L1 -649 5482 5256 440 261 122 40 chrX 138296514 138296748 -38677392 + MIR SINE MIR 18 262 0 186 286 32 16 chrX 138297111 138297174 -38676966 + L2 LINE L2 3194 3257 -15 709 194 33 0 chrX 138297429 138297609 -38676531 - MER53 DNA DNA -2 187 2 306 0 0 0 chrX 138297998 138298032 -38676108 + (TG)n Simple_repeat Simple_repeat 1 34 0 1584 196 0 26 chrX 138300768 138301080 -38673060 - AluJo SINE Alu -8 304 1 249 203 8 148 chrX 138301113 138301241 -38672899 + MER102a DNA MER1_type 221 330 0 878 211 67 19 chrX 138301293 138301502 -38672638 + MER20 DNA MER1_type 1 219 0 513 286 136 19 chrX 138301830 138302036 -38672104 - MIR SINE MIR -18 244 15 518 308 7 0 chrX 138302047 138302193 -38671947 - MIR SINE MIR -9 253 107 297 337 0 0 chrX 138302303 138302389 -38671751 + MIR3 SINE MIR 15 100 -108 266 258 0 0 chrX 138302948 138303010 -38671130 - MER119 DNA MER1_type -349 234 173 6018 101 8 3 chrX 138303023 138304295 -38669845 + L1PB1 LINE L1 4873 6149 -2 453 279 149 0 chrX 138304332 138304486 -38669654 - MER119 DNA MER1_type -400 183 7 441 285 201 3 chrX 138304611 138304895 -38669245 - L1MC4a LINE L1 -1887 5921 5582 13845 157 33 9 chrX 138304990 138306126 -38668014 + L1MA1 LINE L1 1941 3049 -4672 2845 87 0 8 chrX 138306126 138306504 -38667636 - THE1C LTR MaLR 0 375 1 13845 157 33 9 chrX 138306504 138310491 -38663649 + L1MA1 LINE L1 3049 7211 -510 22224 40 1 7 chrX 138310491 138314026 -38660114 + L1PA5 LINE L1 2627 6154 0 13845 157 33 9 chrX 138314026 138314443 -38659697 + L1MA1 LINE L1 7211 7617 -104 5973 129 25 23 chrX 138314443 138314492 -38659648 + L1MA3 LINE L1 4735 4782 -1523 565 98 22 0 chrX 138314492 138314584 -38659556 + L1PB2 LINE L1 6055 6148 -3 5973 129 25 23 chrX 138314584 138314771 -38659369 + L1MA3 LINE L1 4782 4967 -1338 2143 113 55 25 chrX 138314771 138315135 -38659005 - THE1C LTR MaLR 0 375 1 5973 129 25 23 chrX 138315135 138315593 -38658547 + L1MA3 LINE L1 4967 5423 -882 2845 10 0 0 chrX 138315593 138315904 -38658236 + AluYa5 SINE Alu 1 311 0 5973 129 25 23 chrX 138315904 138316777 -38657363 + L1MA3 LINE L1 5423 6305 0 22 0 0 0 chrX 138316777 138316799 -38657341 + AT_rich Low_complexity Low_complexity 1 22 0 3299 176 26 49 chrX 138316852 138316969 -38657171 + L1MC2 LINE L1 5594 5712 -632 1535 184 41 50 chrX 138316969 138317333 -38656807 + MLT1A1 LTR MaLR 3 363 -2 3299 176 26 49 chrX 138317333 138317970 -38656170 + L1MC2 LINE L1 5712 6331 -13 4120 203 26 5 chrX 138317974 138318942 -38655198 + L1MB7 LINE L1 5196 6184 0 434 278 42 14 chrX 138318945 138319089 -38655051 - MLT1E LTR MaLR -433 160 13 1672 130 0 12 chrX 138319123 138319370 -38654770 + AluJb SINE Alu 38 281 -31 393 195 11 0 chrX 138319384 138319471 -38654669 + Charlie4 DNA MER1_type 1874 1961 0 210 313 211 23 chrX 138319761 138319889 -38654251 - MER5B DNA MER1_type -17 161 10 833 239 72 18 chrX 138319902 138320124 -38654016 + MIR SINE MIR 28 261 -1 674 269 119 9 chrX 138320218 138320445 -38653695 + MIR SINE MIR 2 253 -9 1419 108 58 8 chrX 138321156 138321415 -38652725 + L1MA8 LINE L1 6015 6286 -5 1893 120 54 34 chrX 138321515 138321866 -38652274 + LTR32 LTR ERVL 11 368 -103 810 153 19 32 chrX 138321866 138322023 -38652117 + LTR32 LTR ERVL 317 471 0 263 178 0 0 chrX 138322330 138322375 -38651765 - L2 LINE L2 -44 3269 3225 254 217 53 5 chrX 138322383 138322446 -38651694 + MIR SINE MIR 88 151 -57 209 244 0 0 chrX 138323132 138323173 -38650967 - L2 LINE L2 -36 3236 3196 501 315 95 25 chrX 138323207 138323497 -38650643 + L1MCa LINE L1 1755 2165 -4422 3572 108 76 48 chrX 138323560 138324202 -38649938 - L1PA16 LINE L1 -10 6156 5497 3439 242 1 1 chrX 138324202 138325133 -38649007 + L1MCa LINE L1 2805 3735 -2691 507 184 80 0 chrX 138325125 138325250 -38648890 + L1P LINE L1 2236 2370 -3776 * 12078 189 34 12 chrX 138325248 138328074 -38646066 - L1PA13 LINE L1 -3894 2903 1 4200 197 18 7 chrX 138328202 138329217 -38644923 - L1 LINE L1 -1011 5135 4110 679 281 15 25 chrX 138329210 138329609 -38644531 + L1MEc LINE L1 2022 2416 -3980 * 1887 267 117 10 chrX 138329628 138330651 -38643489 + L1MEc LINE L1 2530 3662 -2553 1050 211 35 67 chrX 138330650 138330848 -38643292 + L1MEc LINE L1 4524 4706 -1509 * 4901 56 0 2 chrX 138330848 138331460 -38642680 + L1PA6 LINE L1 5543 6153 -1 1050 211 35 67 chrX 138331460 138331636 -38642504 + L1MEc LINE L1 4706 4886 -1329 955 190 125 4 chrX 138331638 138331870 -38642270 - MER58B DNA MER1_type -1 340 81 1848 257 105 25 chrX 138333697 138334081 -38640059 + MER97b DNA MER1_type? 1 353 -700 2926 148 4 16 chrX 138334081 138334573 -38639567 - MER66B LTR ERV1 0 486 1 1848 257 105 25 chrX 138334573 138335125 -38639015 + MER97b DNA MER1_type? 353 1012 -41 275 126 9 207 chrX 138335132 138335243 -38638897 + L1MB8 LINE L1 6081 6169 -9 309 51 0 0 chrX 138335246 138335285 -38638855 + (TG)n Simple_repeat Simple_repeat 2 40 0 2491 221 65 35 chrX 138335402 138336181 -38637959 - L1ME1 LINE L1 -7 6553 5751 203 189 0 0 chrX 138336182 138336219 -38637921 + (TA)n Simple_repeat Simple_repeat 2 38 0 318 191 11 64 chrX 138336219 138336313 -38637827 + L1MC4 LINE L1 6614 6702 -1340 484 269 48 13 chrX 138336321 138336548 -38637592 - L1ME1 LINE L1 -790 5750 5516 1301 242 66 42 chrX 138336561 138336737 -38637403 - L1ME1 LINE L1 -4891 1649 1479 280 0 24 24 chrX 138336737 138336778 -38637362 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2227 75 0 4 chrX 138336781 138337060 -38637080 - AluSg SINE Alu -32 278 1 1301 242 66 42 chrX 138337060 138337454 -38636686 - L1ME1 LINE L1 -5062 1478 1061 542 279 103 7 chrX 138337452 138337878 -38636262 - L1MEd LINE L1 -3545 2837 2371 * 2749 100 10 81 chrX 138338318 138338562 -38635578 - L1PA15 LINE L1 -1 6164 5969 2234 115 120 28 chrX 138338562 138338954 -38635186 - MSTA LTR MaLR 0 428 1 2749 100 10 81 chrX 138338954 138339190 -38634950 - L1PA15 LINE L1 -196 5969 5718 245 275 113 0 chrX 138339371 138339513 -38634627 - L1MEd LINE L1 -4730 1652 1495 572 250 81 106 chrX 138339551 138340099 -38634041 - L1MEd LINE L1 -4914 1458 920 2044 266 39 15 chrX 138340387 138340985 -38633155 + L2 LINE L2 2262 2873 -441 335 136 0 0 chrX 138341924 138341990 -38632150 + L1PB1 LINE L1 6086 6151 0 266 323 31 56 chrX 138342980 138343141 -38630999 - L2 LINE L2 -86 3186 3030 5056 158 38 67 chrX 138343266 138343722 -38630418 + L1MC3 LINE L1 6588 7055 -730 465 34 0 0 chrX 138343722 138343781 -38630359 + L1PA3 LINE L1 6093 6151 -4 306 0 0 0 chrX 138343784 138343818 -38630322 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 5056 158 38 67 chrX 138343818 138344171 -38629969 + L1MC3 LINE L1 7057 7359 -426 2003 158 13 90 chrX 138344171 138344639 -38629501 - MSTB1 LTR MaLR 0 432 1 5056 158 38 67 chrX 138344639 138345024 -38629116 + L1MC3 LINE L1 7359 7753 -32 4191 240 54 23 chrX 138345100 138346681 -38627459 - L1M4 LINE L1 -1287 4859 3229 549 285 63 34 chrX 138346918 138347125 -38627015 + MIR SINE MIR 47 259 -3 448 301 30 0 chrX 138347937 138348070 -38626070 + MIR SINE MIR 61 197 -65 449 293 29 8 chrX 138348314 138348502 -38625638 + L1MC4a LINE L1 5499 5662 -459 261 239 30 0 chrX 138348568 138348635 -38625505 + L1MC4a LINE L1 5845 5913 -1895 180 182 0 0 chrX 138348972 138349016 -38625124 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1890 141 25 42 chrX 138349524 138349885 -38624255 + THE1A LTR MaLR 1 355 0 328 340 21 35 chrX 138350076 138350217 -38623923 - L2 LINE L2 0 3272 3134 2552 65 0 3 chrX 138350283 138350593 -38623547 + AluSc SINE Alu 1 309 0 261 0 0 0 chrX 138351118 138351147 -38622993 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 359 62 23 chrX 138351389 138351517 -38622623 - L2 LINE L2 -34 3238 3106 981 278 4 8 chrX 138351873 138352125 -38622015 - MIR SINE MIR 0 262 12 679 249 57 12 chrX 138352128 138352373 -38621767 + MER112 DNA MER1_type 1 256 0 516 179 53 0 chrX 138352404 138352499 -38621641 - MER91B DNA MER1_type 0 190 91 331 278 23 53 chrX 138352518 138352651 -38621489 - MER91B DNA MER1_type -61 129 1 779 154 0 117 chrX 138352788 138352904 -38621236 - MER53 DNA DNA 0 189 108 845 109 47 47 chrX 138352904 138353097 -38621043 + L1MA7 LINE L1 6099 6291 0 779 154 0 117 chrX 138353097 138353194 -38620946 - MER53 DNA DNA -81 108 1 949 296 0 16 chrX 138353708 138353958 -38620182 - MIR SINE MIR -16 246 1 640 224 11 40 chrX 138354757 138354931 -38619209 + MER63A DNA MER1_type 34 202 -8 32 91 0 0 chrX 138355054 138355142 -38618998 + AT_rich Low_complexity Low_complexity 1 88 0 360 255 50 31 chrX 138355193 138355354 -38618786 + L1ME4a LINE L1 5945 6108 -13 451 281 0 33 chrX 138356878 138356999 -38617141 + MIR SINE MIR 33 149 -59 2272 100 0 0 chrX 138357437 138357728 -38616412 - AluSx SINE Alu -21 291 1 746 177 32 16 chrX 138358831 138359017 -38615123 + MER53 DNA DNA 1 189 0 453 19 0 0 chrX 138360252 138360306 -38613834 + (TG)n Simple_repeat Simple_repeat 2 55 0 389 273 41 16 chrX 138360529 138360650 -38613490 + MIR SINE MIR 20 143 -119 2475 76 0 0 chrX 138361264 138361567 -38612573 - AluSx SINE Alu -7 305 3 349 115 0 0 chrX 138361838 138361890 -38612250 + L1PA16 LINE L1 6107 6158 -8 185 231 92 31 chrX 138362632 138362697 -38611443 - MIR SINE MIR -119 143 75 239 273 23 62 chrX 138362834 138362888 -38611252 + LTR67 LTR ERVL 430 551 -5 242 192 41 55 chrX 138362888 138362961 -38611179 + MLT1K LTR MaLR 511 582 -6 222 91 0 0 chrX 138363117 138363150 -38610990 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 534 274 240 0 chrX 138363295 138363499 -38610641 + MIR SINE MIR 10 262 0 340 289 118 11 chrX 138363895 138364082 -38610058 + L1MC5 LINE L1 7708 7914 -47 180 77 0 0 chrX 138365300 138365326 -38608814 + (TTA)n Simple_repeat Simple_repeat 2 27 0 489 283 63 38 chrX 138365460 138365619 -38608521 - MIR SINE MIR -72 190 28 532 156 11 0 chrX 138366215 138366305 -38607835 - MER20 DNA MER1_type 0 219 129 1251 159 12 20 chrX 138366316 138366561 -38607579 + MER96B DNA MER1_type? 11 253 -164 508 178 0 0 chrX 138366642 138366732 -38607408 - MER20 DNA MER1_type -128 91 2 769 266 77 13 chrX 138366836 138367069 -38607071 + MIR SINE MIR 15 262 0 3969 162 50 16 chrX 138367709 138368511 -38605629 - L1MB7 LINE L1 -9 6175 5347 360 0 0 0 chrX 138369333 138369373 -38604767 + (T)n Simple_repeat Simple_repeat 1 40 0 419 290 21 14 chrX 138370949 138371094 -38603046 - MIR SINE MIR -70 192 47 463 312 132 15 chrX 138371635 138371840 -38602300 + MIR SINE MIR 32 260 -2 411 325 78 59 chrX 138371955 138372327 -38601813 + L2 LINE L2 2859 3237 -35 225 209 125 0 chrX 138372956 138373014 -38601126 - MIR SINE MIR -87 121 58 281 305 73 0 chrX 138373500 138373582 -38600558 + L3 LINE CR1 1475 1562 -15 453 227 0 8 chrX 138374256 138374388 -38599752 + L1MB7 LINE L1 5111 5241 -905 1159 186 114 0 chrX 138374388 138374625 -38599515 + Tigger7 DNA MER2_type 1 264 -469 365 282 0 10 chrX 138374626 138374729 -38599411 + (TA)n Simple_repeat Simple_repeat 1 102 0 506 276 0 11 chrX 138374729 138374910 -38599230 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 189 0 0 0 chrX 138374938 138374959 -38599181 + (CA)n Simple_repeat Simple_repeat 2 22 0 522 171 0 0 chrX 138374959 138375038 -38599102 + Tigger7 DNA MER2_type 2406 2487 0 4155 158 38 33 chrX 138375038 138375317 -38598823 + L1MB7 LINE L1 5240 5516 -668 1997 119 82 20 chrX 138375317 138375670 -38598470 - THE1C LTR MaLR 0 375 1 10269 114 44 7 chrX 138375670 138377193 -38596947 - THE1C-int LTR MaLR 0 1580 1 2285 141 25 5 chrX 138377193 138377561 -38596579 - THE1C LTR MaLR 0 375 1 4155 158 38 33 chrX 138377561 138378200 -38595940 + L1MB7 LINE L1 5515 6165 -19 2544 63 0 0 chrX 138379568 138379867 -38594273 - AluY SINE Alu -12 299 1 2221 101 0 41 chrX 138380601 138380918 -38593222 + AluSx SINE Alu 1 304 -8 221 376 51 26 chrX 138381639 138381756 -38592384 - L2 LINE L2 -8 3264 3145 210 235 0 0 chrX 138382157 138382208 -38591932 + MIR3 SINE MIR 150 200 -8 751 248 71 31 chrX 138382285 138382511 -38591629 - MIR SINE MIR -19 243 9 2255 96 0 3 chrX 138382574 138382867 -38591273 - AluSx SINE Alu -20 292 1 327 338 79 25 chrX 138382942 138383297 -38590843 - MARNA DNA Mariner -170 416 43 316 320 35 40 chrX 138383351 138383551 -38590589 + MIR SINE MIR 64 262 0 206 290 14 29 chrX 138384944 138385013 -38589127 - L2 LINE L2 0 3313 3246 270 239 106 56 chrX 138385068 138385210 -38588930 - MIR SINE MIR -112 150 2 363 240 42 10 chrX 138385402 138385498 -38588642 + MIR3 SINE MIR 58 156 -52 233 405 43 0 chrX 138385779 138385895 -38588245 - L2 LINE L2 -50 3222 3102 754 245 29 75 chrX 138386295 138386536 -38587604 - MIR SINE MIR -31 231 2 228 289 36 0 chrX 138386561 138386644 -38587496 - L2 LINE L2 -799 2515 2430 907 163 5 98 chrX 138387287 138387490 -38586650 - MER5A DNA MER1_type -5 184 1 6159 157 68 42 chrX 138387499 138387960 -38586180 - Charlie1a DNA MER1_type -1307 1454 1006 2418 69 3 7 chrX 138387960 138388263 -38585877 - AluSp SINE Alu -11 302 1 6159 157 68 42 chrX 138388263 138388905 -38585235 - Charlie1a DNA MER1_type -1755 1006 305 2562 51 0 0 chrX 138388905 138389200 -38584940 + AluY SINE Alu 2 296 -15 6159 157 68 42 chrX 138389200 138389513 -38584627 - Charlie1a DNA MER1_type -2456 305 1 213 182 23 0 chrX 138389543 138389587 -38584553 - L2 LINE L2 -1 3271 3227 1608 169 3 43 chrX 138390151 138390453 -38583687 + AluJb SINE Alu 1 290 -22 483 270 51 7 chrX 138392280 138392417 -38581723 - L2 LINE L2 -9 3263 3121 10468 165 10 53 chrX 138392428 138394366 -38579774 - L1M1 LINE L1 -5696 1869 15 1201 182 76 0 chrX 138394369 138394571 -38579569 - L1 LINE L1 -1532 4614 4386 441 0 0 0 chrX 138394571 138394620 -38579520 + (TG)n Simple_repeat Simple_repeat 2 50 0 1201 182 76 0 chrX 138394620 138394681 -38579459 - L1 LINE L1 -1760 4386 4331 1432 253 126 38 chrX 138394684 138394792 -38579348 + MER20B DNA MER1_type 60 157 -626 2081 128 0 3 chrX 138394792 138395120 -38579020 - AluSx SINE Alu 0 327 1 1432 253 126 38 chrX 138395120 138395588 -38578552 + MER20B DNA MER1_type 157 688 -95 453 179 0 75 chrX 138395649 138395755 -38578385 - MER5A DNA MER1_type -83 106 9 283 247 32 11 chrX 138395761 138395854 -38578286 + MER20B DNA MER1_type 680 774 -9 7290 82 9 0 chrX 138395906 138397659 -38576481 + L1PA8 LINE L1 4335 6101 -71 551 182 91 16 chrX 138397659 138397780 -38576360 - MLT2B3 LTR ERVL -424 130 1 320 272 114 70 chrX 138397786 138397944 -38576196 - MIR SINE MIR -70 192 28 2261 108 0 3 chrX 138398086 138398383 -38575757 + AluSq SINE Alu 1 296 -17 251 300 110 10 chrX 138398578 138398678 -38575462 - MIR SINE MIR -122 140 31 203 139 0 28 chrX 138399244 138399280 -38574860 - MER91B DNA MER1_type -131 59 25 1784 186 37 12 chrX 138399405 138399733 -38574407 - MLT1A1 LTR MaLR 0 365 30 2168 93 29 10 chrX 138399770 138400082 -38574058 - L1MA5A LINE L1 -5 6292 5975 347 109 0 0 chrX 138400083 138400129 -38574011 - MLT1A1 LTR MaLR -319 46 1 1130 298 51 0 chrX 138400186 138400538 -38573602 + L1ME3A LINE L1 5767 6136 -34 921 265 36 20 chrX 138401015 138401268 -38572872 - MIR SINE MIR -3 259 3 5965 30 0 10 chrX 138401502 138402173 -38571967 + L1PA5 LINE L1 5484 6147 -7 266 324 21 7 chrX 138402345 138402490 -38571650 + (TG)n Simple_repeat Simple_repeat 2 148 0 215 353 0 0 chrX 138402589 138402708 -38571432 + (TATG)n Simple_repeat Simple_repeat 4 122 0 349 275 11 33 chrX 138402730 138402912 -38571228 + (TATG)n Simple_repeat Simple_repeat 3 180 0 711 313 47 0 chrX 138402960 138403171 -38570969 + L2 LINE L2 588 808 -2506 762 225 124 22 chrX 138403173 138403583 -38570557 - MLT1H LTR MaLR -7 542 5 2872 126 178 28 chrX 138403597 138404131 -38570009 - LTR18B LTR ERVL 0 614 1 5852 247 85 60 chrX 138404131 138406577 -38567563 + L2 LINE L2 809 3305 -8 187 242 0 0 chrX 138406697 138406730 -38567410 - MIR SINE MIR -176 86 54 245 263 105 0 chrX 138406752 138406828 -38567312 - MIR SINE MIR -24 238 155 1006 236 38 4 chrX 138406835 138407072 -38567068 + MIR SINE MIR 15 259 -3 250 314 140 68 chrX 138407146 138407382 -38566758 - MIR SINE MIR -1 261 9 28 0 0 0 chrX 138407661 138407689 -38566451 + AT_rich Low_complexity Low_complexity 1 28 0 490 287 37 32 chrX 138408057 138408245 -38565895 - MIR SINE MIR -70 192 4 245 317 56 67 chrX 138408329 138408509 -38565631 - MER5A DNA MER1_type -6 183 6 3179 203 32 30 chrX 138408640 138409453 -38564687 - L1M4 LINE L1 -1125 5021 4207 394 308 20 15 chrX 138409456 138409663 -38564477 - MIR SINE MIR -48 214 9 539 330 25 4 chrX 138410503 138410739 -38563401 + MIR SINE MIR 22 262 0 223 265 0 0 chrX 138411031 138411080 -38563060 + MIR SINE MIR 166 214 -48 4333 187 36 42 chrX 138411606 138412014 -38562126 - L1MD2 LINE L1 -24 6335 5926 772 149 0 0 chrX 138412014 138412169 -38561971 + L1PA13 LINE L1 6039 6193 0 4333 187 36 42 chrX 138412169 138412377 -38561763 - L1MD2 LINE L1 -433 5926 5718 180 0 0 0 chrX 138412377 138412397 -38561743 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4333 187 36 42 chrX 138412397 138412732 -38561408 - L1MD2 LINE L1 -641 5718 5386 778 188 0 0 chrX 138412762 138412874 -38561266 - AluJb SINE Alu -199 113 2 699 216 52 18 chrX 138412877 138413153 -38560987 - L1MD2 LINE L1 -750 5396 5106 602 236 73 39 chrX 138413252 138413430 -38560710 - MIR SINE MIR -26 236 53 1723 140 38 20 chrX 138413431 138413723 -38560417 - MSTC LTR MaLR -131 297 1 1924 186 0 20 chrX 138413723 138413962 -38560178 + L1MB2 LINE L1 5692 5923 -248 1641 198 128 6 chrX 138413962 138414315 -38559825 + MSTD LTR MaLR 1 396 0 1924 186 0 20 chrX 138414315 138414429 -38559711 + L1MB2 LINE L1 5923 6038 -133 * 7041 200 40 38 chrX 138414415 138414549 -38559591 + L1MB7 LINE L1 3474 3606 -2572 934 237 6 0 chrX 138414549 138414718 -38559422 + FAM SINE Alu 1 170 -5 7041 200 40 38 chrX 138414718 138415745 -38558395 + L1MB7 LINE L1 3606 4629 -1549 1887 178 10 0 chrX 138415745 138416049 -38558091 - AluJo SINE Alu -5 307 1 7041 200 40 38 chrX 138416049 138416891 -38557249 + L1MB7 LINE L1 4629 5478 -700 3522 62 7 9 chrX 138416891 138417324 -38556816 - L1PA6 LINE L1 0 6154 5723 2828 58 0 0 chrX 138417324 138417686 -38556454 + L1P LINE L1 3212 3573 -2573 3592 152 15 63 chrX 138417709 138418100 -38556040 + L1MB7 LINE L1 5476 5818 -366 1693 139 0 0 chrX 138418100 138418338 -38555802 + AluSx SINE Alu 1 238 -74 3592 152 15 63 chrX 138418338 138418670 -38555470 + L1MB7 LINE L1 5818 6164 -20 921 142 0 8 chrX 138418752 138418886 -38555254 + FLAM_C SINE Alu 1 133 0 348 213 0 12 chrX 138419176 138419256 -38554884 - MER116 DNA Mariner 0 80 2 2300 102 7 0 chrX 138419265 138419570 -38554570 - AluSq SINE Alu -6 307 1 480 210 49 42 chrX 138419585 138419728 -38554412 - MIR SINE MIR -109 153 10 248 300 105 105 chrX 138419742 138419947 -38554193 - L2 LINE L2 -2 3270 3063 1262 296 37 28 chrX 138419947 138420407 -38553733 - LTR16B LTR ERVL 0 464 1 248 300 105 105 chrX 138420407 138420458 -38553682 - L2 LINE L2 -208 3064 3014 188 308 26 13 chrX 138421043 138421121 -38553019 + L2 LINE L2 3220 3298 -15 1106 143 5 16 chrX 138421505 138421694 -38552446 + L1M1 LINE L1 16 202 -7363 1206 110 17 0 chrX 138421694 138421867 -38552273 - AluSg/x SINE Alu -3 309 134 2357 99 0 0 chrX 138421867 138422169 -38551971 - AluSx SINE Alu -10 302 1 17324 155 31 8 chrX 138422169 138423736 -38550404 + L1M1 LINE L1 193 1858 -5707 2276 105 3 0 chrX 138423736 138424041 -38550099 + AluSq SINE Alu 1 306 -7 17324 155 31 8 chrX 138424041 138425305 -38548835 + L1M1 LINE L1 1858 3091 -4474 1242 137 5 5 chrX 138425314 138425518 -38548622 + L1PBa LINE L1 1 204 -6659 * 1413 114 59 0 chrX 138425509 138425746 -38548394 + L1PBa LINE L1 1113 1363 -5500 27727 131 15 38 chrX 138425880 138430032 -38544108 + L1MA3 LINE L1 1148 5396 -2347 234 0 0 0 chrX 138430032 138430058 -38544082 + (CAA)n Simple_repeat Simple_repeat 2 27 0 27727 131 15 38 chrX 138430058 138430288 -38543852 + L1MA3 LINE L1 5396 5630 -2113 626 130 56 0 chrX 138430288 138430386 -38543754 + L1PB2 LINE L1 6035 6148 -3 27727 131 15 38 chrX 138430386 138430573 -38543567 + L1MA3 LINE L1 5630 5820 -1923 2318 113 55 25 chrX 138430573 138430937 -38543203 - THE1C LTR MaLR 0 375 1 27727 131 15 38 chrX 138430937 138431395 -38542745 + L1MA3 LINE L1 5820 6287 -1456 2799 10 0 0 chrX 138431395 138431697 -38542443 + AluYa5 SINE Alu 1 302 -9 27727 131 15 38 chrX 138431697 138432570 -38541570 + L1MA3 LINE L1 6287 7743 0 22 0 0 0 chrX 138432570 138432592 -38541548 + AT_rich Low_complexity Low_complexity 1 22 0 235 176 0 0 chrX 138432598 138432649 -38541491 + L1MC2 LINE L1 5280 5330 -2665 * 3642 176 26 49 chrX 138432645 138432762 -38541378 + L1MC2 LINE L1 5594 5712 -632 1713 181 41 50 chrX 138432762 138433126 -38541014 + MLT1A1 LTR MaLR 3 363 -2 3642 176 26 49 chrX 138433126 138433763 -38540377 + L1MC2 LINE L1 5712 6331 -13 4552 201 24 5 chrX 138433767 138434717 -38539423 + L1MB7 LINE L1 5196 6164 -20 476 262 49 37 chrX 138434718 138434882 -38539258 - MLT1E LTR MaLR -415 178 13 1694 126 0 12 chrX 138434916 138435163 -38538977 + AluJb SINE Alu 38 281 -31 431 195 11 0 chrX 138435177 138435264 -38538876 + Charlie4 DNA MER1_type 1874 1961 0 339 275 22 11 chrX 138435591 138435682 -38538458 + MER5A DNA MER1_type 89 180 -9 820 239 72 18 chrX 138435695 138435917 -38538223 + MIR SINE MIR 28 261 -1 662 269 119 9 chrX 138436011 138436238 -38537902 + MIR SINE MIR 2 253 -9 1560 108 58 8 chrX 138436949 138437208 -38536932 + L1MA8 LINE L1 6015 6286 -5 2010 125 54 34 chrX 138437308 138437659 -38536481 + LTR32 LTR ERVL 11 368 -103 914 140 19 32 chrX 138437659 138437816 -38536324 + LTR32 LTR ERVL 317 471 0 265 178 0 0 chrX 138438123 138438168 -38535972 - L2 LINE L2 -44 3269 3225 246 217 53 5 chrX 138438176 138438239 -38535901 + MIR SINE MIR 88 151 -57 209 244 0 0 chrX 138438925 138438966 -38535174 - L2 LINE L2 -36 3236 3196 300 294 102 31 chrX 138439035 138439290 -38534850 + L1MEc LINE L1 1682 1954 -4442 3871 109 76 48 chrX 138439353 138439995 -38534145 - L1PA16 LINE L1 -10 6156 5497 3869 229 5 5 chrX 138439993 138440926 -38533214 + L1MEc LINE L1 2592 3524 -2691 550 176 80 0 chrX 138440918 138441043 -38533097 + L1P LINE L1 2236 2370 -3776 * 12889 188 34 12 chrX 138441041 138443867 -38530273 - L1PA13 LINE L1 -3894 2903 1 4433 199 22 7 chrX 138443995 138445006 -38529134 - L1 LINE L1 -1011 5135 4110 762 280 15 28 chrX 138444999 138445399 -38528741 + L1MEc LINE L1 2022 2416 -3980 * 2116 266 117 10 chrX 138445418 138446441 -38527699 + L1MEc LINE L1 2530 3662 -2553 1148 208 35 67 chrX 138446440 138446638 -38527502 + L1MEc LINE L1 4524 4706 -1509 * 4869 57 0 2 chrX 138446638 138447250 -38526890 + L1PA6 LINE L1 5543 6153 -1 1148 208 35 67 chrX 138447250 138447426 -38526714 + L1MEc LINE L1 4706 4886 -1329 1019 194 125 4 chrX 138447428 138447660 -38526480 - MER58B DNA MER1_type -1 340 81 2105 256 105 25 chrX 138449486 138449870 -38524270 + MER97b DNA MER1_type? 1 353 -700 2911 148 4 16 chrX 138449870 138450362 -38523778 - MER66B LTR ERV1 0 486 1 2105 256 105 25 chrX 138450362 138450914 -38523226 + MER97b DNA MER1_type? 353 1012 -41 299 126 9 207 chrX 138450921 138451032 -38523108 + L1MB8 LINE L1 6081 6169 -9 309 51 0 0 chrX 138451035 138451074 -38523066 + (TG)n Simple_repeat Simple_repeat 2 40 0 2680 222 65 35 chrX 138451191 138451970 -38522170 - L1ME1 LINE L1 -7 6553 5751 229 191 11 64 chrX 138452006 138452100 -38522040 + L1MC4 LINE L1 6614 6702 -1340 541 273 44 9 chrX 138452108 138452335 -38521805 - L1ME1 LINE L1 -790 5750 5516 1446 242 66 42 chrX 138452348 138452524 -38521616 - L1ME1 LINE L1 -4891 1649 1479 280 0 24 24 chrX 138452524 138452565 -38521575 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2236 75 0 4 chrX 138452568 138452847 -38521293 - AluSg SINE Alu -32 278 1 1446 242 66 42 chrX 138452847 138453241 -38520899 - L1ME1 LINE L1 -5062 1478 1061 639 282 103 7 chrX 138453239 138453665 -38520475 - L1MDa LINE L1 -3545 2584 2118 * 2760 100 10 81 chrX 138454105 138454349 -38519791 - L1PA15 LINE L1 -1 6164 5969 2227 115 120 28 chrX 138454349 138454741 -38519399 - MSTA LTR MaLR 0 428 1 2760 100 10 81 chrX 138454741 138454977 -38519163 - L1PA15 LINE L1 -196 5969 5718 280 287 107 4 chrX 138455155 138455351 -38518789 - L1MDa LINE L1 -990 1500 1242 537 251 83 108 chrX 138455356 138455886 -38518254 - L1MDa LINE L1 -4928 1191 675 2040 264 39 15 chrX 138456174 138456772 -38517368 + L2 LINE L2 2262 2873 -441 338 136 0 0 chrX 138457711 138457777 -38516363 + L1PB1 LINE L1 6086 6151 0 247 329 31 56 chrX 138458767 138458928 -38515212 - L2 LINE L2 -86 3186 3030 5400 158 38 67 chrX 138459053 138459509 -38514631 + L1MC3 LINE L1 6588 7055 -730 469 34 0 0 chrX 138459509 138459568 -38514572 + L1PA3 LINE L1 6093 6151 -4 342 0 0 0 chrX 138459571 138459609 -38514531 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 5400 158 38 67 chrX 138459609 138459962 -38514178 + L1MC3 LINE L1 7057 7359 -426 2005 158 13 90 chrX 138459962 138460430 -38513710 - MSTB1 LTR MaLR 0 432 1 5400 158 38 67 chrX 138460430 138460815 -38513325 + L1MC3 LINE L1 7359 7753 -32 4576 244 53 22 chrX 138460891 138462473 -38511667 - L1M4 LINE L1 -1287 4859 3229 534 290 63 34 chrX 138462710 138462917 -38511223 + MIR SINE MIR 47 259 -3 447 301 30 0 chrX 138463729 138463862 -38510278 + MIR SINE MIR 61 197 -65 477 298 29 8 chrX 138464106 138464294 -38509846 + L1MC4a LINE L1 5499 5662 -459 277 239 30 0 chrX 138464360 138464427 -38509713 + L1MC4a LINE L1 5845 5913 -1895 180 182 0 0 chrX 138464764 138464808 -38509332 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1891 144 25 42 chrX 138465316 138465677 -38508463 + THE1A LTR MaLR 1 355 0 323 340 21 35 chrX 138465868 138466009 -38508131 - L2 LINE L2 0 3272 3134 2536 65 0 3 chrX 138466075 138466385 -38507755 + AluSc SINE Alu 1 309 0 387 0 0 0 chrX 138466910 138466953 -38507187 + (CA)n Simple_repeat Simple_repeat 1 43 0 230 352 62 23 chrX 138467195 138467323 -38506817 - L2 LINE L2 -34 3238 3106 974 278 4 8 chrX 138467679 138467931 -38506209 - MIR SINE MIR 0 262 12 706 249 57 12 chrX 138467934 138468179 -38505961 + MER112 DNA MER1_type 1 256 0 516 179 53 0 chrX 138468210 138468305 -38505835 - MER91B DNA MER1_type 0 190 91 333 278 23 53 chrX 138468324 138468457 -38505683 - MER91B DNA MER1_type -61 129 1 831 154 0 117 chrX 138468594 138468710 -38505430 - MER53 DNA DNA 0 189 108 871 109 47 47 chrX 138468710 138468903 -38505237 + L1MA7 LINE L1 6099 6291 0 831 154 0 117 chrX 138468903 138469000 -38505140 - MER53 DNA DNA -81 108 1 937 300 0 16 chrX 138469514 138469764 -38504376 - MIR SINE MIR -16 246 1 720 230 6 35 chrX 138470563 138470737 -38503403 + MER63A DNA MER1_type 34 202 -8 32 91 0 0 chrX 138470860 138470948 -38503192 + AT_rich Low_complexity Low_complexity 1 88 0 398 255 50 31 chrX 138470999 138471160 -38502980 + L1ME4a LINE L1 5945 6108 -13 443 281 0 33 chrX 138472684 138472805 -38501335 + MIR SINE MIR 33 149 -59 2265 100 0 0 chrX 138473243 138473534 -38500606 - AluSx SINE Alu -21 291 1 767 177 32 16 chrX 138474637 138474823 -38499317 + MER53 DNA DNA 1 189 0 453 19 0 0 chrX 138476058 138476112 -38498028 + (TG)n Simple_repeat Simple_repeat 2 55 0 387 273 41 16 chrX 138476335 138476456 -38497684 + MIR SINE MIR 20 143 -119 2444 77 0 0 chrX 138477070 138477370 -38496770 - AluSx SINE Alu -10 302 3 352 115 0 0 chrX 138477641 138477693 -38496447 + L1PA16 LINE L1 6107 6158 -8 189 231 92 31 chrX 138478435 138478500 -38495640 - MIR SINE MIR -119 143 75 286 201 87 155 chrX 138478545 138478764 -38495376 + MLT1K LTR MaLR 379 582 -6 222 91 0 0 chrX 138478920 138478953 -38495187 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 549 270 240 0 chrX 138479098 138479302 -38494838 + MIR SINE MIR 10 262 0 7268 118 23 0 chrX 138479701 138480831 -38493309 + L1MA2 LINE L1 1377 2532 -4331 6636 143 22 18 chrX 138480826 138482926 -38491214 + L1MA2 LINE L1 4915 7020 0 * 559 308 11 98 chrX 138483413 138483689 -38490451 + L2 LINE L2 3020 3271 -1 871 225 84 0 chrX 138484072 138484263 -38489877 + MER58C DNA MER1_type 3 209 -6 221 240 0 0 chrX 138484305 138484355 -38489785 + (CA)n Simple_repeat Simple_repeat 1 50 0 300 268 178 45 chrX 138484722 138484879 -38489261 - MIR3 SINE MIR -15 193 16 336 200 191 0 chrX 138484891 138485006 -38489134 + L2 LINE L2 3177 3313 0 737 284 45 21 chrX 138485013 138485256 -38488884 - MIR SINE MIR 0 262 14 301 227 31 23 chrX 138485817 138485945 -38488195 - L1ME4a LINE L1 -2 6119 5991 697 119 0 20 chrX 138486081 138486204 -38487936 - AluSp/q SINE Alu 0 313 190 708 256 82 62 chrX 138486210 138486566 -38487574 - L1ME4a LINE L1 -297 5824 5462 2123 99 26 30 chrX 138486606 138486908 -38487232 - AluSc SINE Alu -8 301 1 323 271 77 8 chrX 138486908 138487100 -38487040 - L1ME4a LINE L1 -701 5461 5264 180 289 70 70 chrX 138487528 138487684 -38486456 - L2 LINE L2 -556 2758 2603 664 274 26 5 chrX 138487764 138487954 -38486186 - MIR SINE MIR -30 232 39 196 161 0 0 chrX 138487963 138487994 -38486146 + MIR SINE MIR 197 227 -35 283 275 86 43 chrX 138488144 138488346 -38485794 + MIR3 SINE MIR 10 220 -42 300 279 52 19 chrX 138488495 138488649 -38485491 - L1MC5 LINE L1 -54 7907 7749 397 103 132 0 chrX 138489066 138489134 -38485006 - MADE1 DNA Mariner -3 77 1 217 204 0 37 chrX 138489342 138489396 -38484744 - MIR SINE MIR -116 92 41 188 293 35 0 chrX 138489472 138489530 -38484610 + L2 LINE L2 3202 3261 -11 337 261 139 0 chrX 138489743 138489858 -38484282 - MIR SINE MIR -76 186 56 2450 74 0 3 chrX 138489941 138490252 -38483888 + AluSg SINE Alu 1 310 0 433 181 128 21 chrX 138490751 138490845 -38483295 - L2 LINE L2 0 3272 3169 332 258 6 24 chrX 138491895 138492062 -38482078 + CT-rich Low_complexity Low_complexity 1 164 0 183 42 0 0 chrX 138492076 138492100 -38482040 + (CGGG)n Simple_repeat Simple_repeat 4 27 0 21 0 0 0 chrX 138492152 138492173 -38481967 + GC_rich Low_complexity Low_complexity 1 21 0 283 247 32 11 chrX 138492294 138492387 -38481753 + MER20B DNA MER1_type 680 774 -9 7625 57 1 3 chrX 138492439 138494270 -38479870 + L1PA8 LINE L1 4335 6166 -6 1380 176 17 47 chrX 138494270 138494522 -38479618 + L1MB7 LINE L1 5866 6112 -72 1705 131 64 8 chrX 138494522 138494697 -38479443 - AluJb SINE Alu 0 306 108 871 49 32 0 chrX 138494697 138494820 -38479320 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1705 131 64 8 chrX 138494820 138494935 -38479205 - AluJb SINE Alu -198 108 1 1380 176 17 47 chrX 138494935 138494974 -38479166 + L1MB7 LINE L1 6112 6151 -33 1880 165 0 3 chrX 138495023 138495320 -38478820 + AluSx SINE Alu 3 298 -14 27 0 0 0 chrX 138495322 138495349 -38478791 + AT_rich Low_complexity Low_complexity 1 27 0 747 140 9 0 chrX 138495359 138495466 -38478674 + AluJb SINE Alu 171 278 -34 385 315 57 89 chrX 138495596 138495910 -38478230 + HAL1 LINE L1 92 395 -2112 602 302 70 20 chrX 138495927 138496225 -38477915 + HAL1 LINE L1 766 1078 -1429 * 5908 194 45 7 chrX 138496217 138497349 -38476791 + L1M1 LINE L1 9 1183 -6382 5735 186 27 12 chrX 138497335 138497402 -38476738 - L1M1 LINE L1 -5150 2415 2350 * 228 86 0 0 chrX 138497402 138497437 -38476703 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1932 141 11 7 chrX 138497437 138497720 -38476420 - AluSx SINE Alu -28 284 1 5735 186 27 12 chrX 138497720 138499358 -38474782 - L1M1 LINE L1 -5214 2351 12 932 196 116 18 chrX 138499359 138499584 -38474556 - ERVL-B1 LTR ERVL -5516 248 2 1238 212 39 68 chrX 138499587 138499646 -38474494 - MLT2B1 LTR ERVL -2 412 353 730 45 38 23 chrX 138499646 138499778 -38474362 + (TAGA)n Simple_repeat Simple_repeat 3 136 0 1238 212 39 68 chrX 138499778 138500150 -38473990 - MLT2B1 LTR ERVL -61 353 5 1204 220 25 13 chrX 138500163 138500477 -38473663 - L1M4 LINE L1 -981 5165 4848 280 247 12 0 chrX 138500473 138500558 -38473582 + L1M4 LINE L1 5072 5157 -989 * 487 315 28 9 chrX 138500739 138500952 -38473188 + MIR SINE MIR 46 262 0 2279 111 3 19 chrX 138501159 138501474 -38472666 + AluSq SINE Alu 1 310 -3 754 256 52 13 chrX 138501636 138501866 -38472274 + MIR SINE MIR 11 249 -13 309 258 93 0 chrX 138502317 138502414 -38471726 - MIR3 SINE MIR -5 203 98 385 285 133 25 chrX 138502905 138503063 -38471077 - MIR3 SINE MIR -14 194 20 28 0 0 0 chrX 138504161 138504189 -38469951 + AT_rich Low_complexity Low_complexity 1 28 0 2275 113 0 0 chrX 138504331 138504633 -38469507 - AluSx SINE Alu -2 310 9 208 333 113 7 chrX 138506285 138506426 -38467714 - MIR3 SINE MIR -2 206 51 382 310 125 59 chrX 138506728 138507031 -38467109 - L2 LINE L2 -110 3162 2840 261 265 0 92 chrX 138507235 138507333 -38466807 + MIR3 SINE MIR 98 186 -22 21 0 0 0 chrX 138508071 138508092 -38466048 + GC_rich Low_complexity Low_complexity 1 21 0 243 133 0 0 chrX 138508294 138508339 -38465801 + (CCG)n Simple_repeat Simple_repeat 2 46 0 188 298 53 53 chrX 138508724 138508818 -38465322 + MIR3 SINE MIR 94 187 -21 23 33 0 0 chrX 138513476 138513506 -38460634 + AT_rich Low_complexity Low_complexity 1 30 0 794 126 47 16 chrX 138513506 138513633 -38460507 - 7SLRNA srpRNA srpRNA -21 299 169 1173 266 12 3 chrX 138513769 138514096 -38460044 + L1M4 LINE L1 4012 4341 -1805 8972 169 9 14 chrX 138514097 138515921 -38458219 + L1PA13 LINE L1 3780 5617 -546 2107 131 0 3 chrX 138515921 138516218 -38457922 + AluSx SINE Alu 1 296 -16 8972 169 9 14 chrX 138516218 138516763 -38457377 + L1PA13 LINE L1 5617 6163 0 3006 170 14 2 chrX 138516763 138517275 -38456865 + L1MA6 LINE L1 5769 6293 -7 2306 190 23 3 chrX 138517287 138517807 -38456333 + L1M4 LINE L1 5193 5728 -456 25 0 0 0 chrX 138518026 138518051 -38456089 + AT_rich Low_complexity Low_complexity 1 25 0 1645 103 9 0 chrX 138519017 138519240 -38454900 + L1PA11 LINE L1 5950 6174 0 25 65 0 0 chrX 138519240 138519286 -38454854 + AT_rich Low_complexity Low_complexity 1 46 0 225 83 0 0 chrX 138519685 138519721 -38454419 + (T)n Simple_repeat Simple_repeat 1 36 0 2843 46 0 0 chrX 138519721 138520047 -38454093 - LTR17 LTR ERV1 -454 326 1 9190 60 5 0 chrX 138520051 138521158 -38452982 - HERV17 LTR ERV1 -5 8621 7509 * 14831 54 21 0 chrX 138521150 138522947 -38451193 - HERV17 LTR ERV1 -2607 6019 4185 400 231 146 46 chrX 138523856 138523986 -38450154 + MIR SINE MIR 17 159 -103 294 263 0 12 chrX 138524037 138524117 -38450023 + MER81 DNA DNA 24 102 -12 1072 168 50 0 chrX 138524252 138524431 -38449709 - MER5A DNA MER1_type 0 189 2 520 335 26 4 chrX 138525072 138525305 -38448835 + MIR SINE MIR 22 259 -3 4407 192 31 32 chrX 138525432 138525818 -38448322 + L1M4 LINE L1 4254 4639 -1539 1887 178 10 0 chrX 138525818 138526122 -38448018 - AluJo SINE Alu -5 307 1 4407 192 31 32 chrX 138526122 138526965 -38447175 + L1M4 LINE L1 4639 5474 -704 * 6731 42 7 6 chrX 138526964 138527795 -38446345 - L1PA4 LINE L1 0 6155 5324 281 356 31 86 chrX 138527989 138528371 -38445769 + L2 LINE L2 2902 3262 -10 2100 139 3 0 chrX 138528534 138528829 -38445311 + AluSx SINE Alu 1 296 -16 306 0 0 0 chrX 138528829 138528863 -38445277 + (TA)n Simple_repeat Simple_repeat 2 35 0 247 328 109 8 chrX 138528971 138529099 -38445041 - L2 LINE L2 -5 3267 3127 24 0 0 0 chrX 138529211 138529235 -38444905 + AT_rich Low_complexity Low_complexity 1 24 0 203 170 21 0 chrX 138529280 138529327 -38444813 + CT-rich Low_complexity Low_complexity 1 48 0 2487 62 7 3 chrX 138529999 138530306 -38443834 - AluY SINE Alu -3 308 1 243 0 0 0 chrX 138530871 138530898 -38443242 + (TG)n Simple_repeat Simple_repeat 2 28 0 2297 75 4 0 chrX 138530901 138531182 -38442958 - AluSq SINE Alu -31 282 1 422 207 46 0 chrX 138531256 138531343 -38442797 - MIR SINE MIR -82 180 90 2312 108 3 0 chrX 138532336 138532643 -38441497 + AluSx SINE Alu 1 308 -4 235 236 0 18 chrX 138532651 138532706 -38441434 + MIR SINE MIR 21 74 -134 456 347 24 24 chrX 138532766 138532979 -38441161 + L3 LINE CR1 1335 1547 -30 401 230 115 0 chrX 138533863 138533950 -38440190 - MER96 DNA MER1_type? -40 135 39 1080 300 136 46 chrX 138533985 138534848 -38439292 + L2 LINE L2 1091 2046 -1268 2425 86 0 0 chrX 138534848 138535149 -38438991 - AluSx SINE Alu -11 301 1 1080 300 136 46 chrX 138535149 138535219 -38438921 + L2 LINE L2 2046 2108 -1206 503 269 103 45 chrX 138535242 138535318 -38438822 + L2 LINE L2 2296 2366 -948 378 0 0 0 chrX 138535318 138535360 -38438780 + (CA)n Simple_repeat Simple_repeat 2 43 0 503 269 103 45 chrX 138535360 138535506 -38438634 + L2 LINE L2 2366 2531 -783 301 286 0 0 chrX 138535715 138535778 -38438362 + MER5A DNA MER1_type 9 71 -118 3094 40 0 0 chrX 138535780 138536128 -38438012 - L1PA7 LINE L1 0 6154 5807 2191 94 0 24 chrX 138536370 138536667 -38437473 + AluY SINE Alu 1 290 -21 2118 94 24 0 chrX 138536678 138536965 -38437175 + AluSq SINE Alu 5 298 -15 191 329 0 86 chrX 138537280 138537420 -38436720 - MIR SINE MIR -81 181 54 769 192 80 45 chrX 138537625 138537849 -38436291 + MER106A DNA MER1_type 1 232 -4 576 288 18 27 chrX 138538094 138538316 -38435824 + MIR SINE MIR 16 235 -27 205 320 86 8 chrX 138538399 138538527 -38435613 - L2 LINE L2 0 3313 3176 520 254 15 0 chrX 138538916 138539046 -38435094 + L2 LINE L2 3182 3313 0 1102 221 79 33 chrX 138539317 138539704 -38434436 - MSTC LTR MaLR 0 428 1 569 226 132 47 chrX 138540219 138540409 -38433731 + MIR SINE MIR 31 236 -26 610 250 39 6 chrX 138540580 138540760 -38433380 + L1M4 LINE L1 5211 5396 -750 25 0 0 0 chrX 138741136 138741161 -38232979 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 138741978 138742000 -38232140 + AT_rich Low_complexity Low_complexity 1 22 0 188 270 22 67 chrX 138742073 138742162 -38231978 - L2 LINE L2 0 3313 3229 366 250 133 17 chrX 138742304 138742424 -38231716 - L2 LINE L2 0 3313 3180 186 71 0 0 chrX 138742853 138742881 -38231259 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1461 160 8 19 chrX 138743628 138743884 -38230256 - AluJb SINE Alu -59 253 1 2276 109 0 0 chrX 138743957 138744260 -38229880 + AluSg SINE Alu 1 303 -7 217 196 339 0 chrX 138744272 138744328 -38229812 + MER5A DNA MER1_type 55 129 -60 26 0 0 0 chrX 138744474 138744500 -38229640 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chrX 138745174 138745203 -38228937 + AT_rich Low_complexity Low_complexity 1 29 0 1672 100 48 24 chrX 138745607 138745858 -38228282 + AluSq SINE Alu 1 257 -56 294 85 0 0 chrX 138745902 138745949 -38228191 + AluSq SINE Alu 262 308 0 1106 272 59 10 chrX 138746161 138746778 -38227362 - L1M4 LINE L1 -3629 2753 2098 9845 43 2 2 chrX 138747156 138749149 -38224991 - L1PA4 LINE L1 0 6155 4155 11169 57 5 2 chrX 138749249 138750798 -38223342 - L1PA4 LINE L1 -1986 4160 2607 12175 57 2 1 chrX 138750798 138752457 -38221683 + L1PA4 LINE L1 936 2597 -3549 6582 190 17 14 chrX 138752446 138754716 -38219424 + L1M1 LINE L1 2262 4538 -3027 * 1777 145 26 51 chrX 138754817 138755198 -38218942 - MSTC LTR MaLR -21 407 55 23 0 0 0 chrX 138755198 138755221 -38218919 + AT_rich Low_complexity Low_complexity 1 23 0 1777 145 26 51 chrX 138755221 138755275 -38218865 - MSTC LTR MaLR -373 55 1 280 321 0 69 chrX 138755280 138755411 -38218729 + L2 LINE L2 3188 3309 -4 30 27 0 0 chrX 138755698 138755735 -38218405 + AT_rich Low_complexity Low_complexity 1 37 0 262 313 87 0 chrX 138755910 138756025 -38218115 + MIR SINE MIR 64 188 -74 2116 101 7 11 chrX 138756044 138756330 -38217810 + AluSc SINE Alu 1 285 -24 2016 89 0 0 chrX 138756818 138757075 -38217065 - AluSx SINE Alu -17 295 39 227 306 59 12 chrX 138757623 138757708 -38216432 - L2 LINE L2 -5 3267 3179 327 353 49 27 chrX 138757799 138758023 -38216117 - MIR SINE MIR -31 231 3 1530 278 67 19 chrX 138758705 138759479 -38214661 - L1ME3 LINE L1 -7 6224 5414 438 278 67 14 chrX 138759480 138759689 -38214451 - L1ME3 LINE L1 -888 5327 5108 * 1148 259 77 25 chrX 138759687 138760267 -38213873 - L1ME3 LINE L1 -1310 4905 4286 420 20 0 0 chrX 138760267 138760316 -38213824 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 1148 259 77 25 chrX 138760316 138760387 -38213753 - L1ME3 LINE L1 -1929 4286 4220 498 283 112 35 chrX 138760399 138760773 -38213367 - L1ME3 LINE L1 -2091 4124 3722 1692 215 69 43 chrX 138760773 138761265 -38212875 - MLT1D LTR MaLR 0 505 1 1941 99 43 117 chrX 138761280 138761431 -38212709 + THE1B LTR MaLR 1 162 -202 2185 110 7 7 chrX 138761431 138761732 -38212408 - AluSx SINE Alu -11 301 1 1941 99 43 117 chrX 138761732 138761920 -38212220 + THE1B LTR MaLR 162 310 -54 1850 128 55 0 chrX 138761920 138762194 -38211946 - AluSx SINE Alu -11 301 13 1941 99 43 117 chrX 138762194 138762246 -38211894 + THE1B LTR MaLR 310 364 0 2463 69 3 0 chrX 138762246 138762581 -38211559 + THE1B-int LTR MaLR 1 336 -1244 5904 52 147 67 chrX 138762581 138763665 -38210475 - MER11A LTR ERVK 0 1266 3 8335 107 1 25 chrX 138763667 138763834 -38210306 + THE1B-int LTR MaLR 331 501 -1079 2190 125 0 6 chrX 138763834 138764146 -38209994 + AluSg SINE Alu 1 310 0 8335 107 1 25 chrX 138764146 138765255 -38208885 + THE1B-int LTR MaLR 501 1576 -4 2088 139 51 20 chrX 138765259 138765612 -38208528 + THE1B LTR MaLR 1 364 0 609 239 8 0 chrX 138765671 138765801 -38208339 - FLAM_A SINE Alu -1 132 2 424 320 58 22 chrX 138766255 138766668 -38207472 - L1ME3 LINE L1 -4653 1743 1316 202 206 0 0 chrX 138766681 138766715 -38207425 + (CATA)n Simple_repeat Simple_repeat 1 34 0 1769 128 0 0 chrX 138766716 138766965 -38207175 - AluY SINE Alu -28 283 35 2346 87 0 0 chrX 138767089 138767389 -38206751 - AluSc SINE Alu -9 300 1 586 195 40 35 chrX 138767400 138767574 -38206566 - L1MC3 LINE L1 -8 7777 7603 512 121 0 0 chrX 138767683 138767766 -38206374 - LTR19-int LTR ERV1 -680 4906 4824 * 12441 84 43 41 chrX 138767765 138770846 -38203294 - LTR19-int LTR ERV1 -967 4619 1462 1755 106 8 4 chrX 138770846 138771091 -38203049 + AluSq SINE Alu 1 246 -67 1329 118 69 8 chrX 138771091 138771336 -38202804 - LTR19A LTR ERV1 -226 260 1 233 128 26 0 chrX 138771485 138771524 -38202616 + MIR3 SINE MIR 159 198 -10 2068 124 3 0 chrX 138771561 138771851 -38202289 + AluY SINE Alu 1 291 -20 519 82 0 0 chrX 138771851 138771924 -38202216 + (TG)n Simple_repeat Simple_repeat 2 74 0 740 310 9 9 chrX 138771984 138772233 -38201907 - MIR SINE MIR 0 262 18 204 213 21 0 chrX 138772463 138772510 -38201630 - L2 LINE L2 -5 3308 3261 2073 136 3 0 chrX 138772647 138772956 -38201184 + AluSg SINE Alu 1 310 0 605 267 88 65 chrX 138772997 138773259 -38200881 - L2 LINE L2 -339 2975 2708 486 146 0 0 chrX 138773463 138773545 -38200595 + (TCCC)n Simple_repeat Simple_repeat 4 85 0 2244 96 3 16 chrX 138773781 138774093 -38200047 - AluSx SINE Alu -4 308 1 1258 204 35 15 chrX 138774803 138775146 -38198994 - L1MA8 LINE L1 -5 6286 5937 4062 128 14 2 chrX 138775163 138775801 -38198339 - L1PA15 LINE L1 -5 6160 5515 3242 219 35 34 chrX 138775802 138776664 -38197476 - L1M1 LINE L1 -6690 875 13 2812 120 29 7 chrX 138778596 138779046 -38195094 + LTR46 LTR ERV1 1 460 0 2259 99 3 3 chrX 138779881 138780175 -38193965 - AluSg1 SINE Alu -15 294 1 4784 142 62 25 chrX 138780175 138781188 -38192952 - MER4A-int LTR ERV1 -1569 5029 3979 4318 135 31 3 chrX 138781209 138781952 -38192188 - MER4A-int LTR ERV1 -1877 3138 2369 357 197 0 0 chrX 138781954 138782015 -38192125 + LTR8 LTR ERV1 157 217 -474 475 110 0 0 chrX 138782015 138782088 -38192052 - MER4A-int LTR ERV1 -3340 1675 1603 1072 116 0 7 chrX 138782192 138782338 -38191802 - AluSq/x SINE Alu -163 150 6 2448 156 31 66 chrX 138782343 138782860 -38191280 - MER4A-int LTR ERV1 -4600 2158 1668 189 74 0 0 chrX 138782860 138782887 -38191253 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2448 156 31 66 chrX 138782887 138783037 -38191103 - MER4A-int LTR ERV1 -5090 1668 1514 4604 159 70 12 chrX 138783050 138784089 -38190051 - MER4A-int LTR ERV1 -4300 2298 1200 1762 147 71 26 chrX 138784246 138784628 -38189512 + LTR10E LTR ERV1 214 612 -21 2210 127 120 65 chrX 138784634 138785707 -38188433 - MER4A-int LTR ERV1 -5416 1182 2 2705 91 9 14 chrX 138785711 138785810 -38188330 - MER4A LTR ERV1 0 664 566 4668 141 77 5 chrX 138785810 138786581 -38187559 + LTR1B LTR ERV1 1 826 0 2705 91 9 14 chrX 138786581 138786891 -38187249 - MER4A LTR ERV1 -98 566 261 468 202 0 10 chrX 138786891 138786990 -38187150 - MER4A LTR ERV1 -566 98 1 181 353 29 10 chrX 138787017 138787119 -38187021 - L2 LINE L2 -281 2991 2888 22 35 0 0 chrX 138787606 138787635 -38186505 + AT_rich Low_complexity Low_complexity 1 29 0 32 0 0 0 chrX 138788257 138788289 -38185851 + AT_rich Low_complexity Low_complexity 1 32 0 1163 221 44 79 chrX 138788406 138788864 -38185276 + L1ME2 LINE L1 5676 6117 -47 270 281 106 15 chrX 138789070 138789269 -38184871 + LTR50 LTR ERVL 1 217 -578 3187 207 131 25 chrX 138789618 138789981 -38184159 + Tigger6a DNA MER2_type 6 329 -1268 2418 99 3 0 chrX 138789981 138790293 -38183847 + AluSq SINE Alu 1 313 0 3187 207 131 25 chrX 138790293 138790678 -38183462 + Tigger6a DNA MER2_type 329 672 -925 2201 109 10 0 chrX 138790678 138790982 -38183158 + AluSg SINE Alu 1 307 -3 3187 207 131 25 chrX 138790982 138791205 -38182935 + Tigger6a DNA MER2_type 672 1081 -2 254 195 65 0 chrX 138791228 138791305 -38182835 + LTR50 LTR ERVL 711 792 -3 2317 88 0 13 chrX 138791761 138792066 -38182074 + AluSq SINE Alu 1 301 -12 381 165 10 93 chrX 138792114 138792211 -38181929 + HAL1b LINE L1 352 440 -908 776 288 83 14 chrX 138792311 138792672 -38181468 + HAL1b LINE L1 430 815 -533 388 289 123 4 chrX 138792739 138792999 -38181141 + HAL1b LINE L1 1031 1321 -27 2164 114 0 35 chrX 138793143 138793460 -38180680 + AluSx SINE Alu 1 306 -6 465 200 0 57 chrX 138794600 138794705 -38179435 - L2 LINE L2 0 3313 3215 3227 181 78 50 chrX 138794726 138795554 -38178586 + MER21B LTR ERV1 12 863 0 291 275 87 51 chrX 138795559 138795697 -38178443 - L2 LINE L2 -96 3217 3075 2346 82 0 3 chrX 138795772 138796065 -38178075 + AluSp SINE Alu 1 292 -21 320 213 0 13 chrX 138796297 138796372 -38177768 + MLT1C LTR MaLR 1 74 -393 * 835 211 11 11 chrX 138796369 138796549 -38177591 + MLT1C LTR MaLR 288 467 0 439 308 38 0 chrX 138797231 138797364 -38176776 + MIR SINE MIR 2 139 -123 204 35 0 0 chrX 138797753 138797782 -38176358 + L2 LINE L2 3285 3313 0 208 0 62 0 chrX 138797904 138797936 -38176204 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 464 271 77 0 chrX 138798338 138798508 -38175632 + L1ME LINE L1 5612 5794 -327 320 175 180 79 chrX 138798564 138798753 -38175387 + L1MC5 LINE L1 6802 7009 -952 2067 99 7 20 chrX 138798770 138799064 -38175076 - AluSp SINE Alu -22 291 2 347 89 18 0 chrX 138799360 138799416 -38174724 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 29 0 0 chrX 138799451 138799485 -38174655 + AT_rich Low_complexity Low_complexity 1 34 0 2296 105 8 22 chrX 138799614 138799977 -38174163 + THE1B LTR MaLR 7 364 0 458 239 63 71 chrX 138800036 138800275 -38173865 + L1MC4a LINE L1 6563 6799 -1009 541 254 32 16 chrX 138800395 138800584 -38173556 + L1ME LINE L1 5627 5818 -352 2098 113 7 7 chrX 138800908 138801209 -38172931 + AluSg1 SINE Alu 1 301 -8 410 273 136 0 chrX 138801320 138801452 -38172688 - L2 LINE L2 -4 3309 3160 521 315 9 5 chrX 138803013 138803232 -38170908 - L1ME LINE L1 -332 6491 6272 350 332 120 33 chrX 138803246 138803273 -38170867 - L1ME LINE L1 -3434 3414 3391 2095 121 0 16 chrX 138803273 138803579 -38170561 + AluSq SINE Alu 1 301 -12 350 332 120 33 chrX 138803579 138803852 -38170288 - L1ME LINE L1 -3457 3391 3088 635 221 60 7 chrX 138804048 138804197 -38169943 - MER58B DNA MER1_type -9 332 176 410 283 10 24 chrX 138804240 138804410 -38169730 - L1MDa LINE L1 -3978 2871 2734 22 0 0 0 chrX 138804788 138804810 -38169330 + AT_rich Low_complexity Low_complexity 1 22 0 332 233 108 67 chrX 138804884 138805004 -38169136 - HAL1 LINE L1 -1155 1352 1228 5274 166 18 22 chrX 138805068 138805160 -38168980 - L1MA6 LINE L1 0 6300 6209 2313 104 0 0 chrX 138805160 138805468 -38168672 + AluSc SINE Alu 1 308 -1 5274 166 18 22 chrX 138805468 138806774 -38167366 - L1MA6 LINE L1 -91 6209 4907 2234 88 0 26 chrX 138806917 138807223 -38166917 - AluSg SINE Alu -12 298 1 2026 98 7 49 chrX 138808094 138808401 -38165739 + AluSx SINE Alu 1 294 -18 1976 105 63 69 chrX 138808706 138809013 -38165127 - THE1B LTR MaLR -1 363 57 2268 92 30 0 chrX 138809013 138809308 -38164832 + AluSx SINE Alu 1 304 -8 1976 105 63 69 chrX 138809308 138809362 -38164778 - THE1B LTR MaLR -307 57 4 21 36 0 0 chrX 138810148 138810176 -38163964 + AT_rich Low_complexity Low_complexity 1 28 0 848 264 42 3 chrX 138810246 138810557 -38163583 + MER33 DNA MER1_type 1 323 -1 364 296 32 81 chrX 138810834 138810927 -38163213 + MIR3 SINE MIR 30 111 -97 2105 83 0 61 chrX 138810927 138811240 -38162900 - AluSx SINE Alu -18 294 1 364 296 32 81 chrX 138811240 138811332 -38162808 + MIR3 SINE MIR 111 206 -2 2291 173 109 27 chrX 138811703 138812224 -38161916 + LTR6A LTR ERV1 1 564 0 2134 79 7 18 chrX 138812660 138812939 -38161201 + AluSq SINE Alu 1 276 -37 5002 222 24 19 chrX 138813317 138814462 -38159678 + L1M1 LINE L1 12 1166 -6399 1913 148 7 26 chrX 138814462 138814767 -38159373 - AluJb SINE Alu -13 299 1 5002 222 24 19 chrX 138814767 138814810 -38159330 + L1M1 LINE L1 1166 1207 -6358 6384 115 14 22 chrX 138814815 138815950 -38158190 + L1MA1 LINE L1 5178 6302 0 326 302 22 66 chrX 138817076 138817258 -38156882 - MLT1H LTR MaLR -242 307 134 2281 99 3 0 chrX 138817387 138817689 -38156451 + AluSx SINE Alu 10 312 0 312 260 92 91 chrX 138817925 138818235 -38155905 - MLT1J2 LTR MaLR 0 450 106 1520 193 7 10 chrX 138818436 138818558 -38155582 + AluJb SINE Alu 1 122 -190 375 23 0 0 chrX 138818558 138818602 -38155538 + (TAA)n Simple_repeat Simple_repeat 2 45 0 1520 193 7 10 chrX 138818602 138818769 -38155371 + AluJb SINE Alu 122 289 -23 2348 70 13 0 chrX 138818806 138819104 -38155036 + AluSp SINE Alu 1 302 -11 34850 78 38 3 chrX 138819202 138825129 -38149011 - L1PA5 LINE L1 -9 6145 4 23 78 0 0 chrX 138825147 138825198 -38148942 + AT_rich Low_complexity Low_complexity 1 51 0 425 229 128 22 chrX 138825645 138825824 -38148316 - MLT1F LTR MaLR -8 534 337 344 86 0 35 chrX 138826061 138826119 -38148021 - MLT2B1 LTR ERVL -3 461 406 534 103 0 0 chrX 138826119 138826197 -38147943 + (GA)n Simple_repeat Simple_repeat 1 78 0 1882 185 21 3 chrX 138826203 138826593 -38147547 - MLT2B1 LTR ERVL -71 444 1 259 307 0 13 chrX 138826593 138826668 -38147472 - MLT1J2 LTR MaLR -519 74 1 444 205 18 36 chrX 138826888 138827000 -38147140 + L1M4 LINE L1 14 123 -6419 652 286 0 12 chrX 138827408 138827579 -38146561 + MIR SINE MIR 40 208 -54 2388 126 3 18 chrX 138828064 138828445 -38145695 + THE1C LTR MaLR 1 375 0 204 146 49 0 chrX 138829052 138829093 -38145047 + L2 LINE L2 3261 3303 -10 1077 163 0 0 chrX 138829369 138829565 -38144575 - L1MA5A LINE L1 -3 6294 6099 386 317 67 37 chrX 138829599 138829974 -38144166 + L1M4 LINE L1 522 907 -5918 299 194 0 56 chrX 138830029 138830101 -38144039 - MER90 LTR ERV1 -27 587 520 1759 246 44 6 chrX 138830231 138830706 -38143434 - MER90 LTR ERV1 -112 502 10 243 61 0 0 chrX 138830938 138830971 -38143169 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2049 120 7 3 chrX 138831047 138831356 -38142784 - AluSq SINE Alu -3 310 1 3111 236 57 14 chrX 138831518 138832395 -38141745 + L1MC3 LINE L1 6181 7095 -690 254 263 0 13 chrX 138832395 138832471 -38141669 + MLT1F1 LTR MaLR 33 107 -460 611 278 28 0 chrX 138832473 138832683 -38141457 + L1MD3 LINE L1 7173 7588 -395 2514 82 0 9 chrX 138832785 138833100 -38141040 + AluSq SINE Alu 1 312 -1 2190 103 0 0 chrX 138834065 138834382 -38139758 - AluSx SINE Alu 0 317 1 191 214 0 18 chrX 138834613 138834669 -38139471 + (TA)n Simple_repeat Simple_repeat 1 55 0 257 272 11 17 chrX 138834762 138834942 -38139198 + GA-rich Low_complexity Low_complexity 2 180 0 2152 118 105 35 chrX 138836829 138837229 -38136911 - MSTA LTR MaLR 0 428 1 1502 197 27 53 chrX 138837388 138837676 -38136464 - MLT1A1 LTR MaLR 0 365 88 2019 133 3 3 chrX 138837676 138837970 -38136170 - AluSg SINE Alu -16 294 1 1502 197 27 53 chrX 138837970 138838056 -38136084 - MLT1A1 LTR MaLR -277 88 1 302 216 40 0 chrX 138838279 138838353 -38135787 - MIR SINE MIR -72 190 114 749 233 13 52 chrX 138838388 138838620 -38135520 - MER58A DNA MER1_type 0 224 2 480 183 0 0 chrX 138838967 138839049 -38135091 + Tigger3(Golem) DNA MER2_type 1 82 -2947 624 228 0 0 chrX 138839054 138839177 -38134963 + Tigger3(Golem) DNA MER2_type 2906 3028 -1 22 35 0 0 chrX 138839202 138839231 -38134909 + AT_rich Low_complexity Low_complexity 1 29 0 244 167 17 17 chrX 138841356 138841416 -38132724 + T-rich Low_complexity Low_complexity 5 64 0 2095 107 24 0 chrX 138841707 138841998 -38132142 - AluY SINE Alu -13 298 1 510 229 62 95 chrX 138842588 138842700 -38131440 - MER5B DNA MER1_type -5 173 68 2431 83 0 3 chrX 138842700 138843002 -38131138 - AluSq SINE Alu -12 301 1 510 229 62 95 chrX 138843002 138843068 -38131072 - MER5B DNA MER1_type -110 68 1 876 192 39 6 chrX 138843076 138843258 -38130882 + MER5A DNA MER1_type 1 188 -1 366 287 205 0 chrX 138843267 138843389 -38130751 - MER5A DNA MER1_type 0 189 43 2169 160 2 96 chrX 138843413 138843641 -38130499 - MSTC LTR MaLR 0 428 180 261 83 0 0 chrX 138843641 138843677 -38130463 + (CCCG)n Simple_repeat Simple_repeat 2 37 0 1579 131 28 97 chrX 138843677 138843997 -38130143 - AluYb8 SINE Alu -20 298 1 2169 160 2 96 chrX 138843997 138844237 -38129903 - MSTC LTR MaLR -246 182 3 214 339 42 74 chrX 138844256 138844372 -38129768 - MER5A DNA MER1_type -6 183 74 2336 95 3 0 chrX 138844372 138844667 -38129473 + AluSp SINE Alu 1 296 -17 214 339 42 74 chrX 138844667 138844739 -38129401 - MER5A DNA MER1_type -115 74 1 362 266 8 55 chrX 138844763 138844891 -38129249 + MIR SINE MIR 87 208 -54 2712 117 50 0 chrX 138845285 138845728 -38128412 + MER39B LTR ERV1 1 465 -188 1107 151 10 10 chrX 138846406 138846598 -38127542 + MER39B LTR ERV1 462 653 0 2356 49 7 7 chrX 138846722 138847008 -38127132 + AluY SINE Alu 1 286 -25 190 318 16 0 chrX 138848554 138848617 -38125523 + L2 LINE L2 3207 3270 -2 26 30 0 0 chrX 138848969 138849002 -38125138 + AT_rich Low_complexity Low_complexity 1 33 0 259 346 0 19 chrX 138850078 138850182 -38123958 - MIR SINE MIR -77 131 30 543 275 70 6 chrX 138851823 138851994 -38122146 - MIR SINE MIR -12 250 69 200 393 11 0 chrX 138852019 138852108 -38122032 + L2 LINE L2 2794 2883 -431 1557 149 76 21 chrX 138852350 138852679 -38121461 - MLT2C2 LTR ERVL -117 347 1 398 300 36 43 chrX 138852693 138852833 -38121307 + L2 LINE L2 3174 3312 -1 327 224 13 0 chrX 138853047 138853123 -38121017 + L1ME3A LINE L1 5689 5765 -356 1124 291 86 27 chrX 138853346 138853790 -38120350 - L2 LINE L2 -23 3290 2821 351 294 123 37 chrX 138854255 138854442 -38119698 + L1ME3A LINE L1 5962 6164 -6 2116 113 3 0 chrX 138854461 138854769 -38119371 + AluSq SINE Alu 1 309 0 2828 144 38 18 chrX 138855029 138855576 -38118564 - LTR49 LTR ERV1 -37 558 1 1785 295 329 21 chrX 138856359 138858468 -38115672 + L2 LINE L2 308 3054 -259 741 126 0 0 chrX 138858575 138858686 -38115454 - AluSg SINE Alu -199 111 1 2327 87 3 3 chrX 138859547 138859845 -38114295 + AluSp SINE Alu 1 298 -15 232 341 34 0 chrX 138860449 138860536 -38113604 + L2 LINE L2 228 317 -2997 522 279 146 0 chrX 138860536 138860694 -38113446 - MER5A DNA MER1_type 0 189 9 398 276 4 62 chrX 138860749 138860970 -38113170 + L2 LINE L2 359 639 -2675 2891 194 15 8 chrX 138861144 138861738 -38112402 + MER90 LTR ERV1 2 599 -15 271 193 35 0 chrX 138861779 138861836 -38112304 + MLT1J2 LTR MaLR 99 157 -293 2199 99 20 3 chrX 138861848 138862141 -38111999 - AluSx SINE Alu -14 298 1 357 331 98 31 chrX 138862145 138862432 -38111708 + L2 LINE L2 3008 3313 0 230 293 12 12 chrX 138862509 138862591 -38111549 + (TA)n Simple_repeat Simple_repeat 1 82 0 271 259 7 144 chrX 138862843 138862982 -38111158 + MIR3 SINE MIR 77 196 -12 1964 105 56 25 chrX 138863081 138863366 -38110774 + AluSg SINE Alu 1 294 -16 310 409 21 35 chrX 138864976 138865262 -38108878 - L2 LINE L2 -4 3268 2987 1466 230 3 13 chrX 138866970 138867352 -38106788 - L1 LINE L1 -3179 2967 2590 362 295 79 80 chrX 138867848 138868244 -38105896 + MLT1L LTR MaLR 100 600 -15 2315 84 30 0 chrX 138869838 138870134 -38104006 - AluSp SINE Alu -8 305 1 333 0 0 0 chrX 138870483 138870501 -38103639 + (TG)n Simple_repeat Simple_repeat 1 55 0 333 0 0 0 chrX 138870501 138870538 -38103602 + (TG)n Simple_repeat Simple_repeat 2 38 0 2254 91 7 3 chrX 138870666 138870963 -38103177 - AluSg SINE Alu -12 298 1 25 0 0 0 chrX 138870984 138871009 -38103131 + AT_rich Low_complexity Low_complexity 1 25 0 334 274 9 35 chrX 138871009 138871122 -38103018 - L2 LINE L2 0 3313 3204 384 253 20 0 chrX 138871171 138871270 -38102870 - MER94 DNA DNA -33 101 1 1096 272 69 64 chrX 138871276 138871961 -38102179 - L2 LINE L2 -161 3152 2471 393 318 61 15 chrX 138871966 138872098 -38102042 - MIR3 SINE MIR -54 154 17 211 179 0 36 chrX 138872284 138872340 -38101800 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 668 264 207 54 chrX 138872531 138872693 -38101447 + L2 LINE L2 2905 3041 -272 1720 143 59 51 chrX 138872693 138873065 -38101075 - THE1C LTR MaLR 0 375 1 668 264 207 54 chrX 138873065 138873255 -38100885 + L2 LINE L2 3041 3311 -2 657 274 147 40 chrX 138873326 138873680 -38100460 + L2 LINE L2 2921 3312 -1 1129 184 10 0 chrX 138874847 138875053 -38099087 + MER58A DNA MER1_type 17 224 0 199 200 0 138 chrX 138875302 138875367 -38098773 + MIR3 SINE MIR 9 64 -144 268 297 55 11 chrX 138876698 138876789 -38097351 + MER91C DNA MER1_type 34 128 -12 462 138 30 48 chrX 138876789 138876935 -38097205 + MLT1D LTR MaLR 1 80 -425 1423 205 36 30 chrX 138876935 138877323 -38096817 + MLT2D LTR ERVL 1 534 -20 836 78 39 7 chrX 138877325 138877478 -38096662 + (TA)n Simple_repeat Simple_repeat 1 158 0 336 147 0 0 chrX 138877508 138877583 -38096557 + (TA)n Simple_repeat Simple_repeat 1 75 0 1436 206 47 22 chrX 138877619 138877979 -38096161 + MLT1D LTR MaLR 133 501 -4 1098 246 47 22 chrX 138878068 138878389 -38095751 + MER46C DNA MER2_type 9 337 -1 249 208 19 0 chrX 138878393 138878446 -38095694 + MIR SINE MIR 85 138 -124 207 217 65 0 chrX 138878575 138878621 -38095519 - L2 LINE L2 -7 3306 3258 1387 125 8 35 chrX 138878789 138879045 -38095095 + L1MA5 LINE L1 6052 6300 0 249 266 275 34 chrX 138879291 138879498 -38094642 - MIR SINE MIR -5 257 1 184 291 0 18 chrX 138881392 138881447 -38092693 + L2 LINE L2 3205 3258 -14 1448 176 0 47 chrX 138881505 138881697 -38092443 + AluJo SINE Alu 39 216 -96 3811 133 35 14 chrX 138881697 138882328 -38091812 - LTR9B LTR ERV1 0 644 1 1448 176 0 47 chrX 138882328 138882414 -38091726 + AluJo SINE Alu 216 304 -8 256 287 40 0 chrX 138882568 138882669 -38091471 + L1MC4a LINE L1 5414 5518 -2290 335 267 94 47 chrX 138882843 138883034 -38091106 + L1MC4a LINE L1 5730 5929 -1879 513 84 0 0 chrX 138883063 138883134 -38091006 + (TA)n Simple_repeat Simple_repeat 2 72 0 842 236 109 53 chrX 138883256 138883554 -38090586 + MLT1D LTR MaLR 31 352 -153 1503 159 133 42 chrX 138883554 138883863 -38090277 - MER1B DNA MER1_type 0 337 1 842 236 109 53 chrX 138883863 138883903 -38090237 + MLT1D LTR MaLR 352 388 -117 321 26 0 0 chrX 138884453 138884491 -38089649 + (TG)n Simple_repeat Simple_repeat 2 39 0 1816 126 59 51 chrX 138885137 138885486 -38088654 - THE1C LTR MaLR 0 375 21 2475 111 31 0 chrX 138885486 138885839 -38088301 + THE1B LTR MaLR 1 364 0 1816 126 59 51 chrX 138885839 138885861 -38088279 - THE1C LTR MaLR -354 21 1 244 147 320 27 chrX 138885906 138885981 -38088159 - MER5B DNA MER1_type -18 160 64 6819 81 27 11 chrX 138885981 138886980 -38087160 + MER41B-int LTR ERV1 4930 5944 -2 3927 75 6 0 chrX 138886980 138887524 -38086616 + MER41B LTR ERV1 1 547 -88 2381 46 3 3 chrX 138887555 138887877 -38086263 - AluY SINE Alu 0 322 1 1758 167 13 19 chrX 138887999 138888371 -38085769 + L1 LINE L1 4699 5068 -1078 640 262 105 6 chrX 138888522 138888694 -38085446 - MIR SINE MIR -32 230 42 21 36 0 0 chrX 138889169 138889197 -38084943 + AT_rich Low_complexity Low_complexity 1 28 0 2382 83 3 0 chrX 138889254 138889554 -38084586 - AluSg SINE Alu -9 301 1 512 320 33 13 chrX 138889639 138889792 -38084348 + L2 LINE L2 3115 3270 -2 563 298 6 24 chrX 138889937 138890105 -38084035 + MIR SINE MIR 2 166 -96 300 230 45 34 chrX 138890134 138890312 -38083828 + L1MC4a LINE L1 5841 6020 -1788 377 253 126 11 chrX 138890497 138890671 -38083469 - MER117 DNA MER1_type 0 197 4 186 268 109 36 chrX 138890679 138890817 -38083323 + L3b LINE CR1 1139 1286 -297 222 315 76 0 chrX 138891114 138891206 -38082934 - MIR SINE MIR -94 114 16 1241 183 81 58 chrX 138891315 138891735 -38082405 - MER66B LTR ERV1 0 486 97 197 309 29 0 chrX 138891895 138891963 -38082177 - MIR SINE MIR -14 248 179 * 1349 266 64 32 chrX 138891959 138892728 -38081412 + L2 LINE L2 2427 3303 -10 390 313 45 0 chrX 138892717 138892851 -38081289 - MIR SINE MIR -63 199 60 * 180 0 0 0 chrX 138892881 138892901 -38081239 + (TC)n Simple_repeat Simple_repeat 1 20 0 6141 206 35 40 chrX 138893251 138894800 -38079340 + MER45R DNA AcHobo 40 1581 0 1817 115 8 0 chrX 138894961 138895214 -38078926 - AluSx SINE Alu -57 255 1 270 286 41 10 chrX 138895215 138895313 -38078827 + HERV16 LTR ERVL 2352 2452 -2544 183 283 43 65 chrX 138895334 138895426 -38078714 - MIR SINE MIR -85 177 88 311 310 88 12 chrX 138895451 138895622 -38078518 + MER5A DNA MER1_type 1 184 -5 2282 335 21 12 chrX 138895751 138896920 -38077220 - HERV16 LTR ERVL -2516 2480 1347 1300 293 62 24 chrX 138896908 138897099 -38077041 - HERV16 LTR ERVL -3776 1220 1038 * 1662 183 70 14 chrX 138897099 138897443 -38076697 + MLT1A1 LTR MaLR 1 363 -2 1300 293 62 24 chrX 138897443 138897932 -38076208 - HERV16 LTR ERVL -3958 1038 469 270 270 14 0 chrX 138897945 138898019 -38076121 + MER20 DNA MER1_type 4 78 -141 2067 171 26 12 chrX 138898019 138898434 -38075706 - MER61C LTR ERV1 0 434 14 425 269 78 0 chrX 138898439 138898580 -38075560 + MER20 DNA MER1_type 65 216 -3 2420 69 0 7 chrX 138898693 138898999 -38075141 + AluSg SINE Alu 1 304 -6 573 306 40 27 chrX 138899157 138899454 -38074686 + LTR16A LTR ERVL 144 444 -6 1584 192 40 26 chrX 138899606 138899955 -38074185 - MLT1A1 LTR MaLR -11 354 1 288 364 25 16 chrX 138900471 138900592 -38073548 - MIR3 SINE MIR -43 165 44 2235 116 7 0 chrX 138900760 138901070 -38073070 - AluSp SINE Alu -1 312 1 1462 197 107 0 chrX 138902150 138902460 -38071680 - MER2 DNA MER2_type -1 343 1 1045 197 65 11 chrX 138902682 138902961 -38071179 - L1 LINE L1 -1022 5124 4831 6818 204 8 2 chrX 138902963 138905233 -38068907 - L1PA15 LINE L1 -5 6811 4530 2284 44 24 0 chrX 138905333 138905631 -38068509 + MER41A LTR ERV1 250 554 0 3834 118 12 35 chrX 138905716 138906380 -38067760 + MER41A-int LTR ERV1 1 649 -5297 3012 122 25 36 chrX 138906367 138906629 -38067511 + MER41A-int LTR ERV1 1082 1345 -6471 * 261 0 0 0 chrX 138906629 138906658 -38067482 + (CAA)n Simple_repeat Simple_repeat 2 30 0 3012 122 25 36 chrX 138906658 138906728 -38067412 + MER41A-int LTR ERV1 1345 1414 -6402 2176 65 0 0 chrX 138906728 138906991 -38067149 - AluY SINE Alu -3 308 46 3012 122 25 36 chrX 138906991 138907554 -38066586 + MER41A-int LTR ERV1 1414 4057 -3759 1990 110 0 0 chrX 138907552 138907843 -38066297 + PABL_A-int LTR ERV1 2565 2855 -2160 * 2589 245 21 28 chrX 138907944 138908614 -38065526 - L1PA15 LINE L1 -6118 669 5 548 137 0 20 chrX 138908628 138908730 -38065410 - L1 LINE L1 -1304 4842 4743 263 188 0 0 chrX 138908727 138908775 -38065365 + L1P LINE L1 4699 4746 -1400 * 435 260 58 34 chrX 138909350 138909558 -38064582 - LTR33 LTR ERVL -2 519 307 780 291 107 27 chrX 138909851 138910226 -38063914 + MLT1I LTR MaLR 5 409 0 348 270 75 78 chrX 138910226 138910545 -38063595 - L1ME3A LINE L1 -223 5947 5630 3250 247 27 21 chrX 138910687 138911611 -38062529 - L1P3 LINE L1 -4937 938 9 11109 127 43 7 chrX 138911618 138913435 -38060705 - L1M1 LINE L1 -4578 2987 1104 645 125 45 0 chrX 138913434 138913546 -38060594 - L1M1 LINE L1 -7430 135 19 * 4064 98 2 18 chrX 138913955 138914489 -38059651 + MER41A-int LTR ERV1 5350 5874 -72 2346 80 3 0 chrX 138914489 138914788 -38059352 - AluY SINE Alu -11 300 1 4064 98 2 18 chrX 138914788 138914856 -38059284 + MER41A-int LTR ERV1 5874 5942 -4 4355 63 0 4 chrX 138914856 138915408 -38058732 + MER41A LTR ERV1 1 550 -4 1823 258 28 27 chrX 138915415 138916086 -38058054 + L1ME LINE L1 4465 5136 -1010 2224 127 74 55 chrX 138916091 138916578 -38057562 - MER84 LTR ERVI -11 496 1 765 233 41 27 chrX 138916579 138916709 -38057431 + L1ME LINE L1 5139 5266 -900 9497 96 3 1 chrX 138916709 138917992 -38056148 - HSMAR1 DNA Mariner 0 1287 2 765 233 41 27 chrX 138917992 138918220 -38055920 + L1ME LINE L1 5266 5502 -664 678 285 38 55 chrX 138918250 138918630 -38055510 + L2 LINE L2 2569 2940 -332 258 291 82 27 chrX 138918658 138918768 -38055372 + L2 LINE L2 2897 3012 -260 5175 250 48 19 chrX 138919007 138919123 -38055017 - L1ME3A LINE L1 -743 5403 5292 2082 144 71 52 chrX 138919123 138919547 -38054593 - MSTB1 LTR MaLR 0 432 1 5175 250 48 19 chrX 138919547 138920753 -38053387 - L1ME3A LINE L1 -854 5292 4049 2600 42 0 13 chrX 138920753 138921065 -38053075 - AluY SINE Alu -3 308 1 5175 250 48 19 chrX 138921065 138921764 -38052376 - L1ME3A LINE L1 -2097 4049 3371 1386 244 79 7 chrX 138921767 138922173 -38051967 + MLT1C LTR MaLR 1 435 -32 456 271 60 67 chrX 138922174 138922443 -38051697 - L1MC5 LINE L1 -108 7853 7587 5900 109 52 6 chrX 138922448 138923390 -38050750 - L1PA14 LINE L1 0 6161 5218 754 172 26 7 chrX 138923383 138923534 -38050606 - L1 LINE L1 -1221 4925 4772 1827 167 0 0 chrX 138923536 138923884 -38050256 + L1 LINE L1 4477 4824 -1322 2368 219 22 0 chrX 138923884 138924153 -38049987 - L1 LINE L1 -1465 4681 4419 189 0 0 0 chrX 138924153 138924174 -38049966 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2368 219 22 0 chrX 138924174 138924489 -38049651 - L1 LINE L1 -1727 4419 4084 2287 245 91 29 chrX 138924483 138925352 -38048788 - L1PBa LINE L1 -5935 928 6 * 457 304 144 3 chrX 138925371 138925670 -38048470 - LTR33A LTR ERVL -54 469 129 413 280 49 107 chrX 138925916 138926141 -38047999 + L2 LINE L2 3057 3268 -4 30 77 0 0 chrX 138928314 138928379 -38045761 + AT_rich Low_complexity Low_complexity 1 65 0 3805 183 34 45 chrX 138928410 138929267 -38044873 - MER21B LTR ERV1 -1 862 16 861 133 123 66 chrX 138929267 138929478 -38044662 + MER46A DNA MER2_type 1 223 -13 343 248 72 56 chrX 138929693 138929818 -38044322 - MIR SINE MIR -44 218 92 196 169 0 46 chrX 138931744 138931809 -38042331 + GA-rich Low_complexity Low_complexity 2 63 0 188 300 40 50 chrX 138931853 138931953 -38042187 + MIR SINE MIR 42 140 -122 * 347 341 22 22 chrX 138931952 138932087 -38042053 - L2 LINE L2 0 3272 3138 335 266 18 75 chrX 138932403 138932629 -38041511 + L2 LINE L2 2850 3062 -251 189 107 0 0 chrX 138932691 138932719 -38041421 + (T)n Simple_repeat Simple_repeat 1 28 0 394 157 0 0 chrX 138932719 138932788 -38041352 - L1ME LINE L1 -5602 468 400 285 279 27 78 chrX 138932790 138933009 -38041131 - L1ME LINE L1 -5748 322 115 1021 280 93 44 chrX 138933069 138933668 -38040472 + L2 LINE L2 2681 3311 -2 2158 129 0 0 chrX 138933874 138934185 -38039955 + AluY SINE Alu 1 311 0 32 0 0 0 chrX 138934773 138934805 -38039335 + AT_rich Low_complexity Low_complexity 1 32 0 346 324 34 0 chrX 138935211 138935359 -38038781 + MER117 DNA MER1_type 10 162 -35 341 299 132 15 chrX 138936030 138936227 -38037913 + ERVL LTR ERVL 3532 3751 -2013 189 94 0 0 chrX 138936461 138936493 -38037647 + (A)n Simple_repeat Simple_repeat 1 32 0 237 346 12 0 chrX 138937855 138937936 -38036204 + L2 LINE L2 2279 2360 -954 23 33 0 0 chrX 138937974 138938004 -38036136 + AT_rich Low_complexity Low_complexity 1 30 0 767 332 29 64 chrX 138938007 138938459 -38035681 + L2 LINE L2 2383 2818 -496 769 203 21 43 chrX 138938559 138938746 -38035394 + AluJo SINE Alu 127 309 -3 957 118 0 14 chrX 138938855 138938999 -38035141 + AluSg/x SINE Alu 167 308 -4 695 248 49 0 chrX 138939007 138939253 -38034887 + HAL1 LINE L1 1107 1364 -1143 1134 250 69 70 chrX 138939352 138939890 -38034250 + HAL1 LINE L1 1674 2211 -296 1731 182 96 6 chrX 138939890 138940253 -38033887 + MSTD LTR MaLR 1 396 0 1134 250 69 70 chrX 138940253 138940340 -38033800 + HAL1 LINE L1 2211 2297 -210 1319 192 120 11 chrX 138940340 138940606 -38033534 + AluJo SINE Alu 1 295 -17 1134 250 69 70 chrX 138940606 138940704 -38033436 + HAL1 LINE L1 2297 2397 -110 3017 204 14 5 chrX 138940959 138941125 -38033015 - MLT1A1-int LTR MaLR -1103 632 469 2118 151 0 0 chrX 138941125 138941423 -38032717 + AluSx SINE Alu 1 298 -14 3017 204 14 5 chrX 138941423 138941878 -38032262 - MLT1A1-int LTR MaLR -1266 469 5 1897 156 19 52 chrX 138941882 138942248 -38031892 - MLT1A1 LTR MaLR 0 365 12 234 338 60 33 chrX 138942585 138942736 -38031404 - MER5A DNA MER1_type -1 188 34 * 448 351 0 7 chrX 138942602 138942753 -38031387 + MER5A DNA MER1_type 35 184 -5 2521 141 44 2 chrX 138942953 138943364 -38030776 - MSTA LTR MaLR 0 428 1 2390 100 0 3 chrX 138945387 138945698 -38028442 + AluSg SINE Alu 1 310 0 1309 255 21 29 chrX 138945721 138946105 -38028035 + LTR16A LTR ERVL 65 445 -5 5575 31 0 0 chrX 138946180 138946833 -38027307 + L1PA4 LINE L1 5500 6152 -3 25 0 0 0 chrX 138948714 138948739 -38025401 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chrX 138949033 138949072 -38025068 + AT_rich Low_complexity Low_complexity 1 39 0 635 289 89 50 chrX 138950979 138951359 -38022781 + MLT1L LTR MaLR 219 613 -2 730 282 55 60 chrX 138951396 138951653 -38022487 - L2 LINE L2 -125 3188 2934 2490 82 0 0 chrX 138951653 138951956 -38022184 + AluSc SINE Alu 1 303 -6 730 282 55 60 chrX 138951956 138952192 -38021948 - L2 LINE L2 -379 2934 2698 4364 142 26 59 chrX 138952225 138953196 -38020944 - Ricksha DNA DNA -24 3227 2289 597 212 12 18 chrX 138953198 138953368 -38020772 + CT-rich Low_complexity Low_complexity 4 172 0 2109 97 0 4 chrX 138953368 138953646 -38020494 - AluY SINE Alu -34 277 1 3754 128 8 21 chrX 138953646 138953995 -38020145 - Ricksha DNA DNA -947 2299 1960 1818 168 3 3 chrX 138953995 138954280 -38019860 + AluJo SINE Alu 7 291 -21 3754 128 8 21 chrX 138954280 138954548 -38019592 - Ricksha DNA DNA -1286 1960 1690 1861 101 0 0 chrX 138954565 138954802 -38019338 + AluSc SINE Alu 6 242 -67 740 189 13 0 chrX 138954827 138954980 -38019160 - Ricksha_a DNA DNA -1025 156 2 2734 157 11 17 chrX 138954982 138955460 -38018680 + MLT2B2 LTR ERVL 41 515 0 2240 104 0 3 chrX 138956461 138956759 -38017381 - AluSg SINE Alu -13 297 1 414 0 0 0 chrX 138957175 138957221 -38016919 + (TA)n Simple_repeat Simple_repeat 2 47 0 2494 59 0 16 chrX 138957221 138957527 -38016613 - AluY SINE Alu -10 301 1 1219 188 12 31 chrX 138957569 138957824 -38016316 + MIR SINE MIR 3 252 -10 354 250 188 28 chrX 138958003 138958147 -38015993 - MIR3 SINE MIR -39 169 3 349 250 0 58 chrX 138959276 138959380 -38014760 - MIR3 SINE MIR -5 203 106 2168 94 4 0 chrX 138960053 138960330 -38013810 + AluSp SINE Alu 1 278 -35 384 22 0 0 chrX 138960331 138960376 -38013764 + (TC)n Simple_repeat Simple_repeat 2 46 0 396 0 0 0 chrX 138960383 138960427 -38013713 + (TA)n Simple_repeat Simple_repeat 1 44 0 757 254 60 5 chrX 138960549 138960766 -38013374 + REP3 LTR ERV 251 479 -83 714 251 84 15 chrX 138960883 138961188 -38012952 + MSTD LTR MaLR 2 357 -38 4433 131 50 11 chrX 138961188 138961976 -38012164 + L1PA14 LINE L1 5344 6161 0 324 100 0 0 chrX 138961988 138962038 -38012102 + MSTD LTR MaLR 406 455 -2 864 176 0 0 chrX 138962780 138962933 -38011207 + L1PA15 LINE L1 1 153 -6634 537 267 15 108 chrX 138963059 138963392 -38010748 + L1PA15 LINE L1 1188 1489 -5298 4588 182 11 10 chrX 138963393 138964933 -38009207 + L1PA15 LINE L1 2942 6693 -123 2765 199 41 8 chrX 138964943 138965557 -38008583 + LTR9B LTR ERV1 7 640 -4 273 169 135 56 chrX 138965559 138965648 -38008492 + HUERS-P3b LTR ERV1 1 96 -7322 593 204 26 40 chrX 138965659 138965811 -38008329 + HUERS-P3b LTR ERV1 440 589 -8330 * 5431 149 9 3 chrX 138965797 138966674 -38007466 + HUERS-P3 LTR ERV1 2403 3284 -5635 754 241 0 0 chrX 138966667 138966812 -38007328 + HUERS-P3 LTR ERV1 4539 4683 -4236 * 3875 127 75 2 chrX 138966812 138967435 -38006705 + HUERS-P3 LTR ERV1 4901 5569 -3350 3795 176 9 11 chrX 138967427 138968180 -38005960 + HUERS-P3 LTR ERV1 6162 6933 -485 * 812 172 12 11 chrX 138968198 138968391 -38005749 + HUERS-P3 LTR ERV1 2385 4320 -560 414 263 17 8 chrX 138968681 138968799 -38005341 + HUERS-P3 LTR ERV1 6828 6946 -145 * 558 158 11 11 chrX 138968780 138968875 -38005265 + HUERS-P3 LTR ERV1 8822 8916 -3 2929 176 65 13 chrX 138968883 138969484 -38004656 + LTR9B LTR ERV1 7 638 -6 634 167 0 0 chrX 138969488 138969602 -38004538 + L1PA15 LINE L1 6042 6155 -10 2690 33 0 0 chrX 138969670 138969976 -38004164 + AluY SINE Alu 1 306 -5 13846 200 29 16 chrX 138969977 138976858 -37997282 + L1PB2 LINE L1 6 6067 -800 2187 137 116 13 chrX 138976858 138977246 -37996894 + MSTA LTR MaLR 1 428 0 13846 200 29 16 chrX 138977246 138978057 -37996083 + L1PB2 LINE L1 6067 6866 -1 333 179 126 0 chrX 138978033 138978128 -37996012 - L1ME4a LINE L1 -55 6066 5960 * 1947 162 0 9 chrX 138978295 138978610 -37995530 + AluSx SINE Alu 1 312 0 24 0 0 0 chrX 138978698 138978722 -37995418 + AT_rich Low_complexity Low_complexity 1 24 0 2515 110 11 8 chrX 138979276 138979650 -37994490 + THE1C LTR MaLR 1 375 0 10508 111 7 62 chrX 138979650 138981323 -37992817 + THE1C-int LTR MaLR 1 1580 0 2460 118 11 11 chrX 138981323 138981696 -37992444 + THE1C LTR MaLR 1 373 -2 344 219 67 38 chrX 138981742 138981847 -37992293 - MLT1H LTR MaLR -439 110 3 383 315 9 0 chrX 138981858 138981966 -37992174 + L2 LINE L2 2832 2940 -373 1240 254 215 7 chrX 138982001 138982406 -37991734 - MLT1H LTR MaLR -60 489 1 228 245 0 0 chrX 138982481 138982534 -37991606 + MLT1H LTR MaLR 496 548 -1 1946 156 20 55 chrX 138982837 138983241 -37990899 - MLT1B LTR MaLR 0 390 1 3708 43 0 11 chrX 138983846 138984326 -37989814 + L1PA6 LINE L1 5695 6154 0 2286 87 6 19 chrX 138984554 138984865 -37989275 + AluY SINE Alu 1 307 -4 1669 133 14 11 chrX 138984952 138985238 -37988902 + L1MA5 LINE L1 6014 6300 0 232 371 72 0 chrX 138986444 138986541 -37987599 + MLT1-int LTR MaLR 756 859 -512 1835 250 81 17 chrX 138986996 138987512 -37986628 + MLT1H LTR MaLR 1 549 0 2123 166 17 6 chrX 138987757 138988118 -37986022 + MLT1A1 LTR MaLR 1 365 0 267 302 95 8 chrX 138989035 138989161 -37984979 + L1MC4 LINE L1 6866 7002 -1040 2091 134 57 17 chrX 138989775 138990125 -37984015 + THE1B LTR MaLR 1 364 0 11211 113 2 1 chrX 138990125 138991701 -37982439 + THE1B-int LTR MaLR 1 1578 -2 2067 137 45 25 chrX 138991703 138992060 -37982080 + THE1B LTR MaLR 1 364 0 493 94 0 59 chrX 138992835 138992920 -37981220 + MADE1 DNA Mariner 1 80 0 692 259 105 50 chrX 138994124 138994471 -37979669 + L1ME4a LINE L1 2571 2968 -3178 207 0 0 0 chrX 138994471 138994494 -37979646 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 692 259 105 50 chrX 138994494 138994738 -37979402 + L1ME4a LINE L1 2968 3197 -2949 1147 275 103 58 chrX 138995371 138996551 -37977589 + L1ME4a LINE L1 3786 5092 -1029 625 217 0 0 chrX 138996551 138996671 -37977469 + FLAM_A SINE Alu 2 121 -12 1147 275 103 58 chrX 138996671 138997429 -37976711 + L1ME4a LINE L1 5092 5814 -307 31 68 0 0 chrX 138997490 138997549 -37976591 + AT_rich Low_complexity Low_complexity 1 59 0 283 196 65 72 chrX 138997625 138997778 -37976362 + L1ME4a LINE L1 5966 6117 -4 207 162 0 0 chrX 138997795 138997832 -37976308 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 219 0 94 chrX 138997840 138997936 -37976204 + L1MC4 LINE L1 6615 6701 -1341 183 156 0 0 chrX 138997939 138997971 -37976169 + (TA)n Simple_repeat Simple_repeat 2 33 0 285 230 110 20 chrX 138998175 138998275 -37975865 - L1ME4a LINE L1 -6 6115 6007 32 43 0 0 chrX 138998394 138998440 -37975700 + AT_rich Low_complexity Low_complexity 1 46 0 419 256 82 10 chrX 138998643 138998838 -37975302 - L1ME4a LINE L1 -219 5951 5743 459 301 41 5 chrX 138998928 138999124 -37975016 - L1ME4a LINE L1 -224 5897 5695 246 277 12 0 chrX 138999260 138999343 -37974797 + L1ME4a LINE L1 5696 5779 -342 234 251 198 27 chrX 138999371 138999558 -37974582 + L1ME4a LINE L1 5839 6057 -64 721 246 188 13 chrX 138999649 139000113 -37974027 - L1ME4a LINE L1 -2 6119 5575 199 254 51 34 chrX 139000283 139000342 -37973798 + L2 LINE L2 3004 3063 -209 350 113 19 0 chrX 139000435 139000488 -37973652 + L2 LINE L2 3258 3311 -2 1077 190 22 63 chrX 139001253 139001511 -37972629 + MIR SINE MIR 1 249 -13 311 65 22 0 chrX 139001511 139001557 -37972583 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1033 201 47 0 chrX 139004794 139005008 -37969132 - MER58A DNA MER1_type 0 224 1 878 199 87 48 chrX 139006525 139006756 -37967384 - MIR SINE MIR 0 262 23 2369 100 0 0 chrX 139008096 139008405 -37965735 - AluSc SINE Alu 0 309 1 373 310 124 7 chrX 139008907 139009052 -37965088 - MIR3 SINE MIR -17 191 30 312 310 89 32 chrX 139009109 139009267 -37964873 - MER5B DNA MER1_type -11 167 1 5421 66 4 1 chrX 139009430 139010126 -37964014 - L1PA8 LINE L1 -21 6151 5454 1553 61 35 0 chrX 139010506 139010785 -37963355 - L1PA8 LINE L1 -730 5442 5157 307 305 70 19 chrX 139013239 139013452 -37960688 - Tigger2 DNA MER2_type -1400 1318 1095 269 0 0 53 chrX 139013498 139013536 -37960604 + (TTCTC)n Simple_repeat Simple_repeat 1 36 0 1863 136 4 0 chrX 139013536 139013800 -37960340 - AluSq SINE Alu -3 310 50 2265 99 0 7 chrX 139014750 139015044 -37959096 + AluSg SINE Alu 1 292 -18 198 167 0 0 chrX 139015044 139015080 -37959060 + (TA)n Simple_repeat Simple_repeat 1 36 0 312 27 0 0 chrX 139015080 139015117 -37959023 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 241 81 46 chrX 139015117 139015291 -37958849 - L1ME LINE L1 -535 5586 5407 823 116 210 0 chrX 139016175 139016313 -37957827 - AluSg/x SINE Alu -12 300 134 1916 79 0 0 chrX 139016348 139016613 -37957527 - MER41B LTR ERV1 -368 267 3 181 128 0 77 chrX 139017429 139017468 -37956672 + L2 LINE L2 2792 2827 -487 433 135 53 18 chrX 139017860 139018205 -37955935 + (TA)n Simple_repeat Simple_repeat 1 357 0 234 300 71 0 chrX 139018511 139018581 -37955559 - MIR SINE MIR -56 152 78 880 214 193 25 chrX 139018699 139018984 -37955156 + MSTD LTR MaLR 2 334 -62 495 141 0 83 chrX 139018946 139019067 -37955073 + MLT2B2 LTR ERVL 405 515 0 * 896 267 13 9 chrX 139019355 139019580 -37954560 - MIR SINE MIR -5 257 32 562 235 24 6 chrX 139021624 139021790 -37952350 - MER96B DNA MER1_type? -236 181 13 282 56 0 0 chrX 139022343 139022379 -37951761 + (CCCCCA)n Simple_repeat Simple_repeat 3 38 0 2445 74 0 23 chrX 139023307 139023616 -37950524 - AluSx SINE Alu -10 302 1 1084 265 49 0 chrX 139023814 139024139 -37950001 + MER58B DNA MER1_type 1 341 0 306 0 0 0 chrX 139024486 139024520 -37949620 + (TC)n Simple_repeat Simple_repeat 2 35 0 254 261 67 59 chrX 139024634 139024753 -37949387 - MIR SINE MIR -62 200 81 1864 83 0 0 chrX 139026011 139026241 -37947899 - AluSp SINE Alu -83 230 1 231 395 20 14 chrX 139026245 139026392 -37947748 + L2 LINE L2 2941 3088 -184 188 278 209 27 chrX 139026540 139026727 -37947413 + L2 LINE L2 3045 3265 -48 291 308 50 100 chrX 139026768 139027008 -37947132 + L2 LINE L2 3041 3268 -4 1529 192 10 29 chrX 139027071 139027384 -37946756 + AluJo SINE Alu 1 307 -5 549 44 0 0 chrX 139027384 139027452 -37946688 + (GGAA)n Simple_repeat Simple_repeat 1 68 0 2373 87 3 31 chrX 139027456 139027778 -37946362 + AluSp SINE Alu 1 313 0 2288 97 6 13 chrX 139028052 139028363 -37945777 + AluSq SINE Alu 1 309 -4 32 57 0 0 chrX 139028472 139028525 -37945615 + AT_rich Low_complexity Low_complexity 1 53 0 2296 109 0 0 chrX 139028863 139029165 -37944975 + AluSx SINE Alu 1 302 -10 199 286 43 43 chrX 139031118 139031188 -37942952 - L2 LINE L2 0 3272 3203 531 188 128 0 chrX 139031196 139031313 -37942827 - MIR SINE MIR -68 194 63 306 242 66 11 chrX 139032460 139032551 -37941589 + MER5B DNA MER1_type 82 177 -1 2456 84 0 3 chrX 139032656 139032965 -37941175 + AluSc SINE Alu 1 308 -1 597 218 67 8 chrX 139032982 139033221 -37940919 - MER33 DNA MER1_type -14 310 58 408 304 76 6 chrX 139033379 139033537 -37940603 - MIR3 SINE MIR -21 187 19 5134 97 6 6 chrX 139035310 139036102 -37938038 + L1PB2 LINE L1 5359 6150 -1 260 161 69 46 chrX 139036140 139036227 -37937913 - L1MA8 LINE L1 -2 6289 6201 2487 109 51 2 chrX 139036272 139036703 -37937437 - L1MA8 LINE L1 -93 6198 5747 1637 166 0 50 chrX 139036735 139037037 -37937103 + AluJb SINE Alu 1 287 -25 229 99 58 33 chrX 139037825 139037946 -37936194 + (TA)n Simple_repeat Simple_repeat 2 125 0 312 298 124 56 chrX 139037969 139038130 -37936010 - MIR SINE MIR -56 206 35 2357 86 0 0 chrX 139038602 139038894 -37935246 + AluSq SINE Alu 1 292 -21 2341 80 3 7 chrX 139039182 139039484 -37934656 - AluSq SINE Alu -12 301 1 1499 109 20 72 chrX 139040349 139040653 -37933487 + L1MA7 LINE L1 5997 6284 -7 747 298 177 19 chrX 139041274 139041653 -37932487 + L3 LINE CR1 1133 1571 -6 2039 98 0 51 chrX 139041847 139042142 -37931998 + AluSg SINE Alu 1 280 -30 2349 105 0 6 chrX 139043475 139043789 -37930351 - AluSx SINE Alu 0 312 1 180 0 0 0 chrX 139043831 139043851 -37930289 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 * 360 0 0 0 chrX 139043850 139043890 -37930250 + (TC)n Simple_repeat Simple_repeat 2 41 0 1000 192 23 0 chrX 139045904 139046076 -37928064 - MER45A DNA AcHobo -2 176 1 543 261 6 36 chrX 139046871 139047036 -37927104 + HsTC2 DNA Tc2 4 163 -1735 560 141 28 14 chrX 139047045 139047187 -37926953 + HsTC2 DNA Tc2 1710 1853 -45 2290 97 0 3 chrX 139047213 139047512 -37926628 + AluSp SINE Alu 5 302 -11 996 193 78 16 chrX 139047863 139048174 -37925966 - MER33 DNA MER1_type 0 324 1 379 294 96 0 chrX 139048382 139048518 -37925622 + Charlie2a DNA MER1_type 1 149 -2633 * 3352 225 108 63 chrX 139048510 139048729 -37925411 + Charlie2a DNA MER1_type 628 836 -2026 4380 112 9 3 chrX 139048729 139049391 -37924749 + L1MA4A LINE L1 5626 6291 -12 3352 225 108 63 chrX 139049391 139049530 -37924610 + Charlie2a DNA MER1_type 836 967 -1895 1959 161 0 0 chrX 139049530 139049840 -37924300 + AluSx SINE Alu 1 310 -2 3352 225 108 63 chrX 139049840 139049995 -37924145 + Charlie2a DNA MER1_type 967 1114 -1748 2250 111 0 0 chrX 139049995 139050302 -37923838 + AluSc SINE Alu 1 307 -2 3352 225 108 63 chrX 139050302 139050864 -37923276 + Charlie2a DNA MER1_type 1114 1649 -1213 2222 92 3 0 chrX 139050864 139051174 -37922966 + AluSp SINE Alu 1 311 0 3352 225 108 63 chrX 139051174 139051665 -37922475 + Charlie2a DNA MER1_type 1649 2116 -746 2349 98 0 10 chrX 139051665 139051970 -37922170 + AluSx SINE Alu 1 302 -10 3352 225 108 63 chrX 139051970 139052536 -37921604 + Charlie2a DNA MER1_type 2116 2862 0 405 304 161 0 chrX 139053160 139053328 -37920812 - MIR SINE MIR -21 241 47 2300 104 3 0 chrX 139053667 139053964 -37920176 + AluSx SINE Alu 1 298 -14 223 331 19 19 chrX 139054196 139054350 -37919790 + (TATG)n Simple_repeat Simple_repeat 4 157 0 2335 95 0 13 chrX 139054491 139054808 -37919332 - AluSq SINE Alu 0 313 1 638 283 44 0 chrX 139055140 139055320 -37918820 - MIR SINE MIR -71 191 4 313 248 19 48 chrX 139055320 139055425 -37918715 - MIR SINE MIR -145 117 16 215 257 73 64 chrX 139055442 139055529 -37918611 - MIR SINE MIR -66 196 106 2200 130 0 3 chrX 139055529 139055837 -37918303 + AluSg SINE Alu 1 307 -3 215 257 73 64 chrX 139055837 139055858 -37918282 - MIR SINE MIR -156 106 87 2398 94 0 0 chrX 139056555 139056864 -37917276 + AluSc SINE Alu 1 309 0 1938 103 4 0 chrX 139058460 139058713 -37915427 - AluSp SINE Alu -1 312 59 2051 129 32 45 chrX 139258713 139258834 -37715306 + L1MA8 LINE L1 5913 6034 -257 2341 86 0 3 chrX 139258834 139259125 -37715015 - AluSg SINE Alu -20 290 1 2051 129 32 45 chrX 139259125 139259382 -37714758 + L1MA8 LINE L1 6034 6286 -5 607 196 122 7 chrX 139259418 139259566 -37714574 + AluSg/x SINE Alu 137 301 -11 2193 129 0 10 chrX 139259569 139259880 -37714260 + AluSx SINE Alu 1 308 -4 2020 151 0 13 chrX 139260213 139260525 -37713615 - AluJo SINE Alu -2 310 3 2283 104 13 7 chrX 139261364 139261662 -37712478 - AluSx SINE Alu -12 300 1 274 297 153 18 chrX 139261684 139261795 -37712345 + L2 LINE L2 3134 3259 -13 1641 128 7 105 chrX 139262332 139262637 -37711503 - AluSx SINE Alu -37 275 1 1019 139 52 6 chrX 139262717 139262889 -37711251 + Tigger1 DNA MER2_type 2238 2417 -1 2568 156 54 17 chrX 139262891 139263372 -37710768 + L1MA8 LINE L1 5787 6285 -6 2611 227 127 22 chrX 139263397 139263747 -37710393 + L1ME2 LINE L1 4910 5222 -942 2421 91 0 3 chrX 139263747 139264055 -37710085 + AluSg SINE Alu 1 307 -3 2611 227 127 22 chrX 139264055 139264807 -37709333 + L1ME2 LINE L1 5222 6139 -25 1051 161 23 0 chrX 139265047 139265221 -37708919 + AluJb SINE Alu 134 311 -1 332 282 0 24 chrX 139267193 139267205 -37706935 + (TA)n Simple_repeat Simple_repeat 2 13 -109 818 180 0 0 chrX 139267205 139267327 -37706813 + FLAM_A SINE Alu 1 122 -11 332 282 0 24 chrX 139267327 139267412 -37706728 + (TA)n Simple_repeat Simple_repeat 13 98 -24 1990 148 7 0 chrX 139267412 139267710 -37706430 - AluJo SINE Alu -12 300 1 332 282 0 24 chrX 139267710 139267735 -37706405 + (TA)n Simple_repeat Simple_repeat 98 122 0 2254 119 0 6 chrX 139267975 139268286 -37705854 + AluSx SINE Alu 1 309 -3 1029 230 79 55 chrX 139268296 139268714 -37705426 + L1MC/D LINE L1 3585 4012 -2134 854 163 0 0 chrX 139268714 139268849 -37705291 + AluJb SINE Alu 1 135 -177 270 0 0 0 chrX 139268853 139268883 -37705257 + (CA)n Simple_repeat Simple_repeat 2 31 0 438 241 44 22 chrX 139268883 139269020 -37705120 + L1MC/D LINE L1 4064 4203 -1943 2098 129 0 3 chrX 139269035 139269329 -37704811 + AluSg SINE Alu 1 293 -17 248 261 72 44 chrX 139269345 139269525 -37704615 + L1MC5 LINE L1 7491 7675 -286 845 267 86 68 chrX 139269547 139269929 -37704211 + LTR16C LTR ERVL 4 392 -99 392 152 15 0 chrX 139270023 139270089 -37704051 + LTR16C LTR ERVL 425 491 0 572 201 72 62 chrX 139270089 139270152 -37703988 + L1MC5 LINE L1 7718 7779 -182 2248 112 0 0 chrX 139270152 139270438 -37703702 + AluSq SINE Alu 3 288 -25 572 201 72 62 chrX 139270438 139270568 -37703572 + L1MC5 LINE L1 7779 7913 -48 785 183 0 29 chrX 139270763 139270900 -37703240 + FLAM_C SINE Alu 1 133 0 2286 117 0 0 chrX 139271005 139271303 -37702837 + AluSx SINE Alu 1 298 -14 516 269 60 10 chrX 139271320 139271662 -37702478 + L1MC/D LINE L1 5125 5473 -743 305 268 0 0 chrX 139271751 139271833 -37702307 + (TA)n Simple_repeat Simple_repeat 1 82 0 341 275 22 51 chrX 139272024 139272162 -37701978 - L2 LINE L2 -5 3308 3175 2135 134 13 0 chrX 139272423 139272728 -37701412 + AluJb SINE Alu 1 309 -3 7694 140 14 4 chrX 139272765 139274714 -37699426 + L1PA11 LINE L1 4207 6169 -5 283 247 25 49 chrX 139274868 139274937 -37699203 - MER103 DNA DNA -39 127 59 790 155 0 63 chrX 139274937 139275079 -37699061 + FLAM_C SINE Alu 1 133 0 283 247 25 49 chrX 139275079 139275090 -37699050 - MER103 DNA DNA -107 59 49 203 105 53 0 chrX 139275134 139275172 -37698968 + CT-rich Low_complexity Low_complexity 1 40 0 246 288 34 42 chrX 139275174 139275292 -37698848 + MIR3 SINE MIR 84 200 -8 769 182 0 0 chrX 139275610 139275731 -37698409 + FLAM_C SINE Alu 2 122 -11 1942 155 20 3 chrX 139275793 139276134 -37698006 + AluJo SINE Alu 1 346 0 1700 149 54 10 chrX 139276805 139277101 -37697039 - AluJo SINE Alu -3 309 1 755 148 57 0 chrX 139277381 139277503 -37696637 + MER50 LTR ERV1 1 129 -605 1578 153 0 4 chrX 139277505 139277741 -37696399 + AluSx SINE Alu 42 276 -36 803 153 0 33 chrX 139277769 139277952 -37696188 + GA-rich Low_complexity Low_complexity 4 180 0 3322 142 29 20 chrX 139278021 139278611 -37695529 + MER50 LTR ERV1 117 711 -23 434 141 384 40 chrX 139278776 139278875 -37695265 - FLAM_C SINE Alu 0 133 1 2941 85 23 10 chrX 139279646 139280045 -37694095 + MLT2A1 LTR ERVL 1 404 -40 180 219 0 0 chrX 139280045 139280086 -37694054 + (TA)n Simple_repeat Simple_repeat 1 41 0 247 289 24 0 chrX 139280090 139280173 -37693967 - L1MC4 LINE L1 -1344 6698 6614 306 233 14 0 chrX 139280192 139280265 -37693875 + L1MCa LINE L1 1995 2068 -4358 229 120 0 80 chrX 139280276 139280326 -37693814 - LTR66 LTR ERVL -171 439 394 335 308 76 49 chrX 139280738 139280923 -37693217 + MIR3 SINE MIR 16 205 -3 397 283 0 11 chrX 139281151 139281243 -37692897 + MIR SINE MIR 42 132 -76 1920 139 111 153 chrX 139281292 139281630 -37692510 + LTR29 LTR ERV1 1 301 -321 216 0 0 0 chrX 139281630 139281654 -37692486 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1920 139 111 153 chrX 139281654 139281964 -37692176 + LTR29 LTR ERV1 301 622 0 255 194 0 15 chrX 139281966 139282033 -37692107 + L1MA4A LINE L1 5149 5214 -932 936 117 0 8 chrX 139282033 139282161 -37691979 + FLAM_C SINE Alu 1 127 -6 6723 107 13 46 chrX 139282173 139283077 -37691063 + L1MA4A LINE L1 5191 6049 -254 1820 167 10 13 chrX 139283077 139283383 -37690757 - AluJb SINE Alu -7 305 1 6723 107 13 46 chrX 139283383 139283630 -37690510 + L1MA4A LINE L1 6049 6303 0 636 177 50 14 chrX 139284245 139284386 -37689754 + LTR23 LTR ERV1 1 146 -291 375 304 0 11 chrX 139284429 139284521 -37689619 - MIR SINE MIR -76 132 42 363 297 76 49 chrX 139284748 139284933 -37689207 - MIR3 SINE MIR -3 205 16 1455 162 3 64 chrX 139285143 139285439 -37688701 + AluJb SINE Alu 27 304 -8 1403 124 73 11 chrX 139285440 139285718 -37688422 + LTR23 LTR ERV1 140 466 -1 21 82 0 0 chrX 139285870 139285919 -37688221 + AT_rich Low_complexity Low_complexity 1 49 0 665 159 61 61 chrX 139285919 139286051 -37688089 - FLAM_C SINE Alu 0 133 2 1632 141 14 31 chrX 139286055 139286376 -37687764 - AluJo SINE Alu 0 316 1 1215 97 5 72 chrX 139286567 139286711 -37687429 - MER4B LTR ERV1 -1 609 480 2160 100 3 20 chrX 139286711 139287031 -37687109 - AluSx SINE Alu 0 312 1 1215 97 5 72 chrX 139287031 139287081 -37687059 - MER4B LTR ERV1 -130 480 428 2377 84 7 0 chrX 139287083 139287381 -37686759 + AluSp SINE Alu 1 300 -13 235 200 14 14 chrX 139287381 139287451 -37686689 + (TA)n Simple_repeat Simple_repeat 1 70 0 598 135 10 133 chrX 139287461 139287661 -37686479 - MER4A LTR ERV1 -170 494 261 605 124 21 10 chrX 139287661 139287758 -37686382 - MER4A LTR ERV1 -566 98 1 2968 144 34 17 chrX 139288413 139288939 -37685201 + LTR34 LTR ERV1 2 536 -163 864 161 13 13 chrX 139288943 139289092 -37685048 - AluJo SINE Alu -54 258 110 715 195 18 0 chrX 139289128 139289241 -37684899 - AluJo SINE Alu -187 115 1 411 104 45 0 chrX 139289242 139289309 -37684831 + LTR34 LTR ERV1 528 597 -102 1641 170 3 14 chrX 139289310 139289592 -37684548 + AluJo SINE Alu 1 279 -33 788 144 0 0 chrX 139289609 139289727 -37684413 + LTR34 LTR ERV1 582 699 0 4842 107 11 2 chrX 139290160 139290798 -37683342 + LTR9B LTR ERV1 1 644 0 246 274 96 0 chrX 139290972 139291045 -37683095 - MIR SINE MIR -116 146 67 1659 170 55 0 chrX 139291360 139291649 -37682491 - AluJb SINE Alu -7 305 1 225 289 32 26 chrX 139292318 139292354 -37681786 + L1ME4a LINE L1 5904 5938 -183 1734 173 0 14 chrX 139292354 139292649 -37681491 - AluJb SINE Alu -21 291 1 225 289 32 26 chrX 139292649 139292768 -37681372 + L1ME4a LINE L1 5938 6060 -61 26 0 0 0 chrX 139292803 139292829 -37681311 + AT_rich Low_complexity Low_complexity 1 26 0 2276 137 8 17 chrX 139293004 139293361 -37680779 - THE1C LTR MaLR 0 375 22 583 291 41 23 chrX 139293781 139294001 -37680139 + MIR SINE MIR 29 252 -10 313 102 305 0 chrX 139294072 139294131 -37680009 + MADE1 DNA Mariner 3 79 -1 224 274 16 0 chrX 139294977 139295039 -37679101 + L2 LINE L2 3251 3313 0 1223 199 58 8 chrX 139295651 139295837 -37678303 - AluJo SINE Alu 0 320 116 312 0 62 0 chrX 139295837 139295885 -37678255 + (TTTTA)n Simple_repeat Simple_repeat 1 51 0 1223 199 58 8 chrX 139295885 139295977 -37678163 - AluJo SINE Alu -204 116 30 570 173 0 0 chrX 139295977 139296058 -37678082 - AluJ/FLAM SINE Alu -230 82 2 240 312 41 42 chrX 139297147 139297202 -37676938 - MIR SINE MIR -46 216 162 1688 179 7 3 chrX 139297202 139297499 -37676641 - AluJo SINE Alu -14 298 1 240 312 41 42 chrX 139297499 139297643 -37676497 - MIR SINE MIR -100 162 16 433 184 0 0 chrX 139297725 139297801 -37676339 + L1MD2 LINE L1 6017 6092 -267 406 269 135 13 chrX 139298111 139298267 -37675873 + MIR SINE MIR 9 183 -79 2741 81 20 3 chrX 139298280 139298638 -37675502 + L1PA11 LINE L1 5811 6174 0 210 238 0 0 chrX 139298691 139298733 -37675407 + L2 LINE L2 3210 3251 -21 2018 110 33 7 chrX 139299767 139300066 -37674074 - AluSq SINE Alu -4 309 3 333 259 63 52 chrX 139300093 139300267 -37673873 - L1ME4a LINE L1 0 6121 5946 531 253 0 5 chrX 139300727 139301150 -37672990 + (CCA)n Simple_repeat Simple_repeat 1 421 0 306 125 214 0 chrX 139301351 139301407 -37672733 - L2 LINE L2 0 3313 3246 441 0 0 0 chrX 139301476 139301525 -37672615 + (CA)n Simple_repeat Simple_repeat 1 49 0 2438 100 0 0 chrX 139301957 139302267 -37671873 - AluSx SINE Alu -1 311 2 848 152 0 43 chrX 139302294 139302432 -37671708 - FLAM_C SINE Alu -1 132 1 1105 135 0 0 chrX 139303931 139304094 -37670046 + AluSg/x SINE Alu 134 296 -14 883 27 65 8 chrX 139304097 139304469 -37669671 + (TA)n Simple_repeat Simple_repeat 1 393 0 1863 169 15 3 chrX 139304480 139304805 -37669335 + MLT1A1 LTR MaLR 37 365 0 302 263 40 91 chrX 139305190 139305283 -37668857 + HAL1 LINE L1 1 80 -2427 2237 92 3 3 chrX 139305283 139305577 -37668563 + AluSg SINE Alu 1 294 -16 302 263 40 91 chrX 139305577 139305681 -37668459 + HAL1 LINE L1 80 188 -2319 2248 117 0 13 chrX 139306097 139306405 -37667735 - AluSx SINE Alu -8 304 1 439 259 35 17 chrX 139306417 139306591 -37667549 + HAL1 LINE L1 968 1144 -1363 708 288 108 7 chrX 139306609 139306897 -37667243 + HAL1 LINE L1 1281 1597 -910 2164 118 20 61 chrX 139306906 139307297 -37666843 - THE1C LTR MaLR 0 375 1 817 244 112 57 chrX 139307297 139307813 -37666327 - L2 LINE L2 -8 3305 2764 1500 222 52 0 chrX 139307823 139308147 -37665993 - MER58B DNA MER1_type 0 341 1 636 271 5 63 chrX 139308151 139308236 -37665904 + HAL1 LINE L1 1601 1689 -818 2252 115 3 6 chrX 139308236 139308548 -37665592 - AluSx SINE Alu -1 311 1 636 271 5 63 chrX 139308548 139308683 -37665457 + HAL1 LINE L1 1689 1808 -699 592 184 14 75 chrX 139309045 139309192 -37664948 + FLAM_C SINE Alu 2 139 -4 655 215 18 8 chrX 139309299 139309464 -37664676 - MER3 DNA MER1_type -55 154 1 829 201 25 0 chrX 139309897 139310056 -37664084 + MER45A DNA AcHobo 16 178 0 256 322 44 0 chrX 139310061 139310151 -37663989 + L2 LINE L2 3134 3227 -45 2167 78 0 0 chrX 139310933 139311201 -37662939 + AluSg1 SINE Alu 41 308 -1 541 245 26 116 chrX 139311397 139311630 -37662510 + MER20B DNA MER1_type 1 212 -571 2750 147 25 14 chrX 139311638 139311874 -37662266 - Tigger2 DNA MER2_type 0 2718 2473 2507 18 0 0 chrX 139311874 139312146 -37661994 + AluY SINE Alu 28 299 -12 2750 147 25 14 chrX 139312146 139312350 -37661790 - Tigger2 DNA MER2_type -245 2473 2273 309 217 0 0 chrX 139312346 139312406 -37661734 - Tigger2 DNA MER2_type -2654 64 5 * 560 202 130 49 chrX 139312443 139312666 -37661474 + MER20B DNA MER1_type 276 516 -267 2285 69 0 24 chrX 139312708 139313034 -37661106 - AluY SINE Alu 0 319 1 474 93 56 65 chrX 139313115 139313223 -37660917 + MER20B DNA MER1_type 527 633 -150 2262 108 0 0 chrX 139313262 139313557 -37660583 - AluSq SINE Alu -18 295 1 911 266 40 0 chrX 139313580 139313828 -37660312 - MIR SINE MIR 0 262 5 381 188 0 52 chrX 139313860 139313956 -37660184 + MER20B DNA MER1_type 670 760 -23 221 163 23 0 chrX 139315412 139315455 -37658685 + L2 LINE L2 3261 3304 -9 1772 162 185 56 chrX 139315495 139315551 -37658589 - MLT1D LTR MaLR 0 505 458 3586 129 4 2 chrX 139315551 139316077 -37658063 + MER1A DNA MER1_type 1 527 0 1772 162 185 56 chrX 139316077 139316464 -37657676 - MLT1D LTR MaLR -47 458 5 1885 139 0 0 chrX 139319127 139319400 -37654740 + AluJo SINE Alu 9 281 -31 1985 152 34 32 chrX 139319432 139319857 -37654283 + L1PA16 LINE L1 5006 5426 -740 2269 113 0 3 chrX 139319857 139320167 -37653973 + AluSx SINE Alu 1 309 -3 1985 152 34 32 chrX 139320167 139320348 -37653792 + L1PA16 LINE L1 5426 5605 -561 375 143 0 0 chrX 139320354 139320417 -37653723 + MER41B LTR ERV1 485 547 -88 2722 166 29 40 chrX 139320428 139321008 -37653132 + L1PA16 LINE L1 5593 6166 0 276 30 0 0 chrX 139321680 139321713 -37652427 + (TATG)n Simple_repeat Simple_repeat 4 36 0 652 206 0 29 chrX 139321724 139321860 -37652280 - FLAM_C SINE Alu -1 132 1 2186 130 0 0 chrX 139321899 139322198 -37651942 + AluSx SINE Alu 1 299 -13 29 28 0 0 chrX 139322224 139322260 -37651880 + AT_rich Low_complexity Low_complexity 1 36 0 2288 112 0 0 chrX 139322413 139322707 -37651433 - AluSq SINE Alu -19 294 1 4353 167 99 36 chrX 139322707 139323383 -37650757 + Tigger6a DNA MER2_type 17 778 -819 1705 131 0 4 chrX 139323383 139323627 -37650513 + AluJb SINE Alu 1 243 -69 4353 167 99 36 chrX 139323627 139323954 -37650186 + Tigger6a DNA MER2_type 778 1083 0 513 190 0 20 chrX 139323969 139324069 -37650071 - AluJb SINE Alu -5 307 210 187 312 86 11 chrX 139324464 139324557 -37649583 + L2 LINE L2 3173 3272 0 2628 56 0 0 chrX 139324706 139325011 -37649129 + AluY SINE Alu 2 306 -5 2392 108 0 0 chrX 139325444 139325749 -37648391 + AluSx SINE Alu 1 305 -7 317 244 0 0 chrX 139325756 139325846 -37648294 + L1MC4 LINE L1 6614 6703 -1339 447 163 0 0 chrX 139325855 139325935 -37648205 + (TA)n Simple_repeat Simple_repeat 1 80 0 1780 171 0 7 chrX 139325941 139326268 -37647872 + AluJo SINE Alu 1 325 0 233 182 0 30 chrX 139326269 139326335 -37647805 + (TA)n Simple_repeat Simple_repeat 1 64 0 1058 273 17 34 chrX 139326355 139326711 -37647429 - L1MC4a LINE L1 -1940 5868 5519 2111 121 3 0 chrX 139326842 139327131 -37647009 + AluSx SINE Alu 3 292 -20 21 0 0 0 chrX 139327131 139327152 -37646988 + AT_rich Low_complexity Low_complexity 1 21 0 2325 114 0 0 chrX 139327837 139328135 -37646005 + AluSx SINE Alu 1 298 -14 1968 124 35 0 chrX 139328711 139328831 -37645309 + AluSg SINE Alu 1 115 -195 315 0 0 0 chrX 139328831 139328866 -37645274 + (CA)n Simple_repeat Simple_repeat 2 36 0 1968 124 35 0 chrX 139328866 139329027 -37645113 + AluSg SINE Alu 115 292 -18 633 118 0 0 chrX 139329027 139329137 -37645003 + (GGGGA)n Simple_repeat Simple_repeat 3 112 0 1816 236 87 18 chrX 139329665 139330169 -37643971 - MLT1F LTR MaLR -2 540 2 228 0 119 0 chrX 139330366 139330408 -37643732 + T-rich Low_complexity Low_complexity 2 48 0 1904 134 11 4 chrX 139331214 139331490 -37642650 + AluSx SINE Alu 4 281 -31 209 56 0 28 chrX 139331494 139331530 -37642610 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 240 167 0 0 chrX 139332269 139332305 -37641835 + AluJo SINE Alu 3 38 -264 1488 154 0 13 chrX 139332305 139332539 -37641601 + AluJo SINE Alu 76 306 -6 2058 118 7 0 chrX 139332784 139333093 -37641047 + AluSg SINE Alu 1 311 0 611 128 0 21 chrX 139333208 139333302 -37640838 + AluJ/FLAM SINE Alu 2 93 -219 1690 153 50 0 chrX 139333315 139333596 -37640544 + AluJo SINE Alu 13 306 0 593 278 133 4 chrX 139333596 139333830 -37640310 + LTR33 LTR ERVL 251 514 -7 4484 165 18 3 chrX 139334491 139335262 -37638878 - L1MB1 LINE L1 0 6168 5386 3658 193 13 3 chrX 139335387 139336093 -37638047 - L1MB1 LINE L1 -804 5342 4630 1719 167 26 14 chrX 139336088 139336436 -37637704 + L1 LINE L1 4198 4549 -1597 * 701 111 10 0 chrX 139337145 139337244 -37636896 - MLT1B LTR MaLR 0 390 291 1245 149 20 140 chrX 139388845 139389016 -37585124 - AluYb8 SINE Alu 0 308 118 354 45 0 0 chrX 139389016 139389060 -37585080 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2215 109 0 3 chrX 139389060 139389345 -37584795 - AluSx SINE Alu -28 284 1 1245 149 20 140 chrX 139389345 139389522 -37584618 - AluYb8 SINE Alu -188 120 1 755 67 0 0 chrX 139389556 139389646 -37584494 - AluSc SINE Alu -104 205 116 323 360 35 10 chrX 139389852 139390052 -37584088 - MIR SINE MIR -14 248 44 1985 142 0 0 chrX 139391801 139392114 -37582026 + AluSx SINE Alu 2 314 0 276 208 44 13 chrX 139392916 139393075 -37581065 + (TA)n Simple_repeat Simple_repeat 2 165 0 358 305 126 63 chrX 139393196 139393388 -37580752 + L2 LINE L2 2809 2987 -285 2481 65 3 13 chrX 139393388 139393698 -37580442 - AluSp SINE Alu -6 307 1 358 305 126 63 chrX 139393698 139393934 -37580206 + L2 LINE L2 2987 3264 -8 1722 268 184 9 chrX 139394532 139395040 -37579100 + L2 LINE L2 1809 2227 -1086 2070 115 0 11 chrX 139395040 139395327 -37578813 + AluSx SINE Alu 29 312 0 1722 268 184 9 chrX 139395327 139396036 -37578104 + L2 LINE L2 2227 3310 -3 1916 137 161 11 chrX 139396132 139396504 -37577636 - MSTA LTR MaLR 0 428 1 2525 128 8 8 chrX 139396618 139396993 -37577147 - THE1C LTR MaLR 0 375 1 1846 148 3 53 chrX 139397909 139398227 -37575913 - AluJo SINE Alu -10 302 1 215 316 125 24 chrX 139398559 139398727 -37575413 + MER5A DNA MER1_type 1 185 -4 341 284 10 0 chrX 139399046 139399148 -37574992 - L1ME4a LINE L1 -69 6052 5950 1710 146 0 47 chrX 139399554 139399855 -37574285 + AluJb SINE Alu 1 287 -25 195 42 0 0 chrX 139399856 139399880 -37574260 + (GA)n Simple_repeat Simple_repeat 1 24 0 220 232 18 0 chrX 139400103 139400159 -37573981 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 383 205 196 138 chrX 139400763 139401075 -37573065 + MER102a DNA MER1_type 1 330 0 661 222 69 0 chrX 139401804 139401948 -37572192 - MER5A DNA MER1_type -3 186 33 879 137 0 0 chrX 139402105 139402229 -37571911 - FLAM_C SINE Alu -19 124 1 207 0 0 0 chrX 139402476 139402499 -37571641 + (CA)n Simple_repeat Simple_repeat 2 24 0 702 268 123 31 chrX 139403431 139403945 -37570195 + L2 LINE L2 2568 3138 -175 2439 78 0 16 chrX 139404398 139404706 -37569434 - AluSq SINE Alu -10 303 1 193 258 196 10 chrX 139404764 139404861 -37569279 + MIR3 SINE MIR 8 122 -86 1437 171 19 68 chrX 139405555 139405864 -37568276 + AluJo SINE Alu 3 296 -16 433 191 279 15 chrX 139406158 139406294 -37567846 - MER5A DNA MER1_type 0 189 18 327 264 85 9 chrX 139406644 139406750 -37567390 - MIR SINE MIR -136 126 13 257 226 157 29 chrX 139406825 139406927 -37567213 + MIR SINE MIR 75 189 -73 799 153 24 24 chrX 139406940 139407064 -37567076 + FLAM_C SINE Alu 4 127 -16 220 180 0 40 chrX 139407100 139407150 -37566990 + MIR SINE MIR 205 252 -10 2519 53 0 10 chrX 139407706 139408009 -37566131 - AluY SINE Alu -11 300 1 227 203 14 29 chrX 139408355 139408424 -37565716 + MLT1L LTR MaLR 12 79 -536 289 201 23 14 chrX 139408443 139408592 -37565548 + GA-rich Low_complexity Low_complexity 1 150 0 242 300 47 53 chrX 139408601 139408791 -37565349 + MLT1J LTR MaLR 114 302 -209 233 236 125 14 chrX 139409208 139409280 -37564860 + MIR SINE MIR 70 149 -113 219 36 0 0 chrX 139410169 139410197 -37563943 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1565 157 37 37 chrX 139410348 139410672 -37563468 - MER33 DNA MER1_type 0 324 1 2021 119 0 80 chrX 139411802 139412198 -37561942 + AluSq SINE Alu 1 369 0 27 62 0 0 chrX 139412311 139412359 -37561781 + AT_rich Low_complexity Low_complexity 1 48 0 196 200 100 0 chrX 139413747 139413787 -37560353 + MIR SINE MIR 75 118 -90 294 29 0 0 chrX 139413877 139413912 -37560228 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1011 129 0 26 chrX 139413919 139414074 -37560066 - AluJo SINE Alu -43 269 119 271 309 0 0 chrX 139414223 139414291 -37559849 + (CA)n Simple_repeat Simple_repeat 1 68 0 242 130 65 0 chrX 139414291 139414337 -37559803 + MLT2B1 LTR ERVL 464 512 -8 622 143 0 0 chrX 139415770 139415868 -37558272 - L1MA8 LINE L1 -1 6290 6193 2599 179 104 17 chrX 139416264 139416783 -37557357 + MLT1F1 LTR MaLR 1 564 -3 2395 81 0 10 chrX 139416814 139417121 -37557019 - AluY SINE Alu -7 304 1 298 218 188 38 chrX 139417173 139417306 -37556834 + L2 LINE L2 3161 3313 0 2570 157 16 16 chrX 139418877 139419303 -37554837 - MSTB LTR MaLR 0 426 1 238 278 28 14 chrX 139419391 139419463 -37554677 - L2 LINE L2 -37 3276 3204 396 224 0 0 chrX 139419536 139419634 -37554506 + (TA)n Simple_repeat Simple_repeat 1 98 0 288 244 49 0 chrX 139419635 139419717 -37554423 - L1MC4 LINE L1 -1339 6703 6618 268 247 52 0 chrX 139419653 139419730 -37554410 + L1MC4 LINE L1 6616 6696 -1346 * 210 236 0 0 chrX 139419730 139419785 -37554355 + (TATG)n Simple_repeat Simple_repeat 4 58 0 232 218 36 0 chrX 139419816 139419871 -37554269 + L1MD3 LINE L1 6612 6668 -1327 224 167 0 37 chrX 139419878 139419932 -37554208 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 256 306 0 0 chrX 139419933 139420018 -37554122 - L1MC4 LINE L1 -1343 6699 6615 * 265 192 0 135 chrX 139419993 139420097 -37554043 + L1MC4 LINE L1 6614 6703 -1339 206 277 0 0 chrX 139420097 139420144 -37553996 + (TA)n Simple_repeat Simple_repeat 1 47 0 268 271 47 0 chrX 139420145 139420230 -37553910 + L1MC4 LINE L1 6614 6702 -1340 238 289 22 0 chrX 139420169 139420259 -37553881 - L1MC4 LINE L1 -1337 6705 6614 * 276 261 0 22 chrX 139420261 139420353 -37553787 + L1MC4 LINE L1 6614 6703 -1339 243 170 0 0 chrX 139420354 139420401 -37553739 + (TA)n Simple_repeat Simple_repeat 2 48 0 227 105 0 0 chrX 139420401 139420439 -37553701 - LTR66 LTR ERVL -169 441 404 236 213 0 0 chrX 139420439 139420486 -37553654 + L1MC4 LINE L1 6656 6702 -1340 896 227 146 80 chrX 139420865 139420962 -37553178 - HAL1 LINE L1 -1137 1370 1281 1789 138 66 0 chrX 139420962 139421251 -37552889 - AluSx SINE Alu -4 308 1 896 227 146 80 chrX 139421251 139421743 -37552397 - HAL1 LINE L1 -1226 1281 742 1759 212 50 92 chrX 139421743 139422285 -37551855 + MLT2B1 LTR ERVL 2 520 0 13909 184 53 17 chrX 139422286 139424059 -37550081 + ERVL-B1 LTR ERVL 2 1906 -3858 2002 142 0 17 chrX 139424059 139424361 -37549779 - AluJo SINE Alu -15 297 1 13909 184 53 17 chrX 139424361 139425244 -37548896 + ERVL-B1 LTR ERVL 1906 2755 -3009 1382 250 31 19 chrX 139425244 139425604 -37548536 - MLT1A2 LTR MaLR 0 374 11 3753 169 14 67 chrX 139425607 139426369 -37547771 + ERVL-B1 LTR ERVL 2751 3472 -2292 711 162 0 0 chrX 139426373 139426484 -37547656 + ERVL LTR ERVL 2508 2618 -3146 13242 153 32 24 chrX 139426495 139427385 -37546755 + ERVL LTR ERVL 3484 4365 -1399 807 159 0 51 chrX 139427385 139427523 -37546617 - FLAM_C SINE Alu 0 133 3 13242 153 32 24 chrX 139427523 139428895 -37545245 + ERVL LTR ERVL 4365 5764 0 822 262 70 4 chrX 139428895 139428973 -37545167 + Ricksha DNA DNA 341 433 -2813 2351 110 0 3 chrX 139428998 139429307 -37544833 + AluSx SINE Alu 1 308 -4 764 144 93 7 chrX 139429327 139429466 -37544674 + L1MB8 LINE L1 6019 6169 -9 228 339 31 56 chrX 139430416 139430611 -37543529 + MIR SINE MIR 14 203 -59 378 0 0 0 chrX 139430877 139430919 -37543221 + (CA)n Simple_repeat Simple_repeat 1 42 0 2194 127 3 0 chrX 139431657 139431965 -37542175 + AluSx SINE Alu 1 309 -3 442 38 0 0 chrX 139431987 139432040 -37542100 + MADE1 DNA Mariner 1 53 -27 391 75 0 0 chrX 139432116 139432169 -37541971 + MADE1 DNA Mariner 28 80 0 410 292 36 36 chrX 139432428 139432596 -37541544 + MIR SINE MIR 70 237 -25 2014 135 4 0 chrX 139432598 139432914 -37541226 - AluSx SINE Alu 0 317 1 25 0 0 0 chrX 139434073 139434098 -37540042 + AT_rich Low_complexity Low_complexity 1 25 0 3789 96 25 0 chrX 139434098 139434611 -37539529 - L1PA10 LINE L1 -4 6164 5639 688 138 8 65 chrX 139434762 139434885 -37539255 + AluJb SINE Alu 2 117 -195 207 0 0 0 chrX 139434890 139434913 -37539227 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 379 288 68 48 chrX 139436284 139436466 -37537674 + MIR SINE MIR 33 220 -42 1558 212 13 73 chrX 139436466 139436822 -37537318 - MLT1A2 LTR MaLR -1 373 42 2199 109 0 0 chrX 139436822 139437115 -37537025 - AluSx SINE Alu -19 293 1 1558 212 13 73 chrX 139437115 139437155 -37536985 - MLT1A2 LTR MaLR -332 42 1 379 288 68 48 chrX 139437155 139437199 -37536941 + MIR SINE MIR 220 262 0 226 241 17 17 chrX 139437197 139437255 -37536885 + MIR3 SINE MIR 130 187 -21 * 185 143 14 57 chrX 139439277 139439347 -37534793 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 257 164 27 73 chrX 139439371 139439481 -37534659 + (TAAA)n Simple_repeat Simple_repeat 2 106 0 185 143 14 57 chrX 139439549 139439619 -37534521 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 221 170 28 75 chrX 139439643 139439749 -37534391 + (TAAA)n Simple_repeat Simple_repeat 2 102 0 450 304 94 9 chrX 139440303 139440529 -37533611 + MIR SINE MIR 23 262 0 186 214 29 57 chrX 139442798 139442868 -37531272 - L2 LINE L2 -530 2784 2717 1849 132 39 35 chrX 139443089 139443400 -37530740 + AluSx SINE Alu 1 312 0 2429 89 0 0 chrX 139444233 139444535 -37529605 - AluSq SINE Alu -11 302 1 191 233 278 22 chrX 139444857 139444947 -37529193 - L2 LINE L2 -18 3295 3183 359 322 89 19 chrX 139445486 139445728 -37528412 + MIR SINE MIR 1 256 -6 2175 116 0 3 chrX 139446285 139446579 -37527561 - AluY SINE Alu -18 293 1 412 275 106 12 chrX 139446597 139446634 -37527506 - MIR SINE MIR -87 175 143 2303 101 0 0 chrX 139446634 139446922 -37527218 + AluSc SINE Alu 8 295 -14 412 275 106 12 chrX 139446922 139447044 -37527096 - MIR SINE MIR -119 143 1 241 333 13 0 chrX 139447519 139447597 -37526543 + MIR SINE MIR 46 124 -84 214 186 0 0 chrX 139447870 139447913 -37526227 + T-rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chrX 139447954 139447978 -37526162 + AT_rich Low_complexity Low_complexity 1 24 0 331 309 140 32 chrX 139447997 139448275 -37525865 - L2 LINE L2 0 3313 3006 523 222 185 63 chrX 139449000 139449160 -37524980 - MER113 DNA MER1_type? -127 394 255 1758 135 0 8 chrX 139449160 139449420 -37524720 - AluSx SINE Alu -20 292 35 523 222 185 63 chrX 139449420 139449610 -37524530 - MER113 DNA MER1_type? -266 255 1 3193 175 18 32 chrX 139449705 139450239 -37523901 + L1MB7 LINE L1 5433 5958 -226 1915 142 11 3 chrX 139450239 139450521 -37523619 + AluSx SINE Alu 29 312 0 3193 175 18 32 chrX 139450521 139450609 -37523531 + L1MB7 LINE L1 5958 6046 -138 256 276 55 35 chrX 139451277 139451422 -37522718 + MIR SINE MIR 92 239 -23 2352 102 0 3 chrX 139451657 139451962 -37522178 - AluSg SINE Alu -6 304 1 2019 103 4 7 chrX 139452106 139452387 -37521753 - AluSc SINE Alu -29 280 1 215 317 106 21 chrX 139452933 139453075 -37521065 - MIR3 SINE MIR 0 208 55 1624 37 0 21 chrX 139453449 139453640 -37520500 + AluY SINE Alu 1 187 -124 595 74 0 0 chrX 139453640 139453721 -37520419 + AluY SINE Alu 229 309 -1 189 330 227 0 chrX 139454122 139454325 -37519815 - L2 LINE L2 -347 2967 2719 799 144 0 104 chrX 139454338 139454511 -37519629 + L1MB8 LINE L1 5838 5992 -186 892 139 11 50 chrX 139454582 139454762 -37519378 + L1MB8 LINE L1 6004 6176 -2 309 266 21 11 chrX 139455003 139455097 -37519043 + MIR SINE MIR 49 143 -119 870 174 30 89 chrX 139455098 139455334 -37518806 - MIR SINE MIR -21 241 20 684 49 41 24 chrX 139457653 139457776 -37516364 + (TTTC)n Simple_repeat Simple_repeat 2 126 0 746 238 24 15 chrX 139458172 139458378 -37515762 + L1ME1 LINE L1 5955 6162 -4 1059 170 10 39 chrX 139458641 139458847 -37515293 - MER58A DNA MER1_type -20 204 5 197 316 13 0 chrX 139459049 139459128 -37515012 - L2 LINE L2 -639 2675 2596 1230 92 55 0 chrX 139459220 139459384 -37514756 - AluSq SINE Alu -140 173 1 259 336 49 25 chrX 139459747 139459869 -37514271 - L2 LINE L2 0 3272 3148 723 209 39 28 chrX 139459913 139460103 -37514037 - L1M3 LINE L1 -529 5639 5459 2341 90 3 3 chrX 139461772 139462071 -37512069 + AluSx SINE Alu 1 299 -13 582 204 99 23 chrX 139462202 139462374 -37511766 + MER5A DNA MER1_type 5 189 0 191 302 0 0 chrX 139462445 139462488 -37511652 - MIR SINE MIR -130 78 36 2463 43 14 0 chrX 139463222 139463502 -37510638 - AluSp SINE Alu -8 305 22 247 250 10 52 chrX 139464067 139464163 -37509977 + MIR3 SINE MIR 10 101 -107 962 203 35 0 chrX 139465352 139465554 -37508586 - MER3 DNA MER1_type 0 209 1 240 152 0 0 chrX 139465615 139465648 -37508492 + AluY SINE Alu 1 33 -269 2402 74 0 0 chrX 139465648 139465933 -37508207 + AluY SINE Alu 17 301 -10 24 32 0 0 chrX 139467559 139467590 -37506550 + AT_rich Low_complexity Low_complexity 1 31 0 2344 100 0 3 chrX 139467831 139468130 -37506010 + AluSc SINE Alu 1 298 -11 580 307 71 4 chrX 139468302 139468540 -37505600 + MIR SINE MIR 6 259 -3 1006 124 0 0 chrX 139468875 139469012 -37505128 - FRAM SINE Alu -28 148 12 188 314 29 0 chrX 139469137 139469207 -37504933 - L2 LINE L2 -58 3214 3143 864 167 97 5 chrX 139469273 139469459 -37504681 + MER20 DNA MER1_type 17 219 0 357 282 35 75 chrX 139469459 139469538 -37504602 - L2 LINE L2 -244 3069 2988 2188 98 6 31 chrX 139469538 139469856 -37504284 + AluSx SINE Alu 1 310 -2 357 282 35 75 chrX 139469856 139470003 -37504137 - L2 LINE L2 -325 2988 2852 952 204 0 33 chrX 139470146 139470327 -37503813 - AluJo SINE Alu -137 175 1 1254 143 14 45 chrX 139471148 139471371 -37502769 - AluJo SINE Alu -10 302 87 387 0 0 0 chrX 139471393 139471436 -37502704 + (CA)n Simple_repeat Simple_repeat 2 44 0 275 286 45 40 chrX 139471539 139471738 -37502402 + L2 LINE L2 2489 2688 -626 2382 114 0 0 chrX 139472539 139472847 -37501293 + AluSx SINE Alu 3 310 -2 250 305 54 54 chrX 139472984 139473187 -37500953 + L2 LINE L2 2184 2386 -928 2261 113 0 6 chrX 139473616 139473927 -37500213 - AluSx SINE Alu -1 311 3 2033 129 0 40 chrX 139474397 139474722 -37499418 - AluSx SINE Alu 0 312 1 309 68 0 0 chrX 139474840 139474884 -37499256 + (TA)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chrX 139477095 139477118 -37497022 + (CA)n Simple_repeat Simple_repeat 2 24 0 355 312 51 0 chrX 139477850 139477988 -37496152 - MIR SINE MIR -71 191 47 24 53 0 0 chrX 139478547 139478585 -37495555 + AT_rich Low_complexity Low_complexity 1 38 0 2230 170 82 40 chrX 139478785 139479286 -37494854 - Charlie1b DNA MER1_type 0 523 2 538 204 51 0 chrX 139479511 139479609 -37494531 - MER20 DNA MER1_type -116 103 1 1830 168 0 14 chrX 139479762 139480059 -37494081 + AluJb SINE Alu 1 293 -19 1978 127 57 0 chrX 139480164 139480447 -37493693 + AluJb SINE Alu 2 300 -12 457 310 13 9 chrX 139480562 139480738 -37493402 + MIR SINE MIR 16 189 -64 2229 123 3 0 chrX 139481174 139481508 -37492632 - L1P LINE L1 -1024 5122 4788 2101 141 7 0 chrX 139482049 139482354 -37491786 + AluSx SINE Alu 1 307 -5 941 227 39 5 chrX 139482746 139482949 -37491191 - MER20 DNA MER1_type -9 210 1 23 68 0 0 chrX 139483025 139483069 -37491071 + AT_rich Low_complexity Low_complexity 1 44 0 2348 111 0 0 chrX 139483206 139483512 -37490628 - AluSx SINE Alu -6 306 1 1997 145 0 7 chrX 139483772 139484068 -37490072 - AluJo SINE Alu -9 303 10 1963 175 72 25 chrX 139484127 139484572 -37489568 - MLT1C LTR MaLR -1 466 1 2332 83 3 0 chrX 139484592 139484882 -37489258 - AluY SINE Alu -20 291 1 647 38 0 13 chrX 139484882 139484961 -37489179 - AluY SINE Alu -177 134 57 1446 94 0 5 chrX 139484961 139485152 -37488988 - AluY SINE Alu -121 190 1 1898 206 74 32 chrX 139485534 139485935 -37488205 + MLT2B1 LTR ERVL 1 425 -95 2603 111 14 0 chrX 139485935 139486305 -37487835 + THE1C LTR MaLR 1 375 0 1898 206 74 32 chrX 139486305 139486364 -37487776 + MLT2B1 LTR ERVL 425 480 -40 265 133 0 0 chrX 139486415 139486460 -37487680 + MLT2B1 LTR ERVL 471 515 0 411 305 102 0 chrX 139486536 139486703 -37487437 + MIR SINE MIR 7 190 -72 932 209 60 90 chrX 139486715 139487117 -37487023 + L1MC5 LINE L1 6850 7239 -722 351 205 60 0 chrX 139487263 139487346 -37486794 + L1M4 LINE L1 3105 3192 -2954 1801 142 24 3 chrX 139488360 139488648 -37485492 - AluJb SINE Alu -18 294 1 27 73 0 0 chrX 139489017 139489072 -37485068 + AT_rich Low_complexity Low_complexity 1 55 0 2611 39 0 23 chrX 139489413 139489722 -37484418 - AluY SINE Alu -9 302 1 225 304 13 0 chrX 139490624 139490703 -37483437 - MER116 DNA Mariner 0 80 1 2357 81 10 0 chrX 139491416 139491712 -37482428 + AluSp SINE Alu 1 299 -14 575 275 83 50 chrX 139491961 139492196 -37481944 - MIR SINE MIR -9 253 16 1740 136 64 93 chrX 139493780 139494156 -37479984 + MLT1A1 LTR MaLR 1 365 0 693 297 55 27 chrX 139494791 139495084 -37479056 + MER20B DNA MER1_type 55 355 -428 506 283 171 10 chrX 139495095 139495300 -37478840 + MIR SINE MIR 13 250 -12 411 292 88 15 chrX 139495320 139495457 -37478683 + MER20B DNA MER1_type 370 516 -267 1748 111 0 0 chrX 139495814 139496039 -37478101 + AluSg/x SINE Alu 71 295 -15 279 118 0 20 chrX 139496814 139496865 -37477275 - Alu SINE Alu 0 302 253 1025 175 8 2 chrX 139497524 139497782 -37476358 - AluJb SINE Alu -2 310 2 207 0 0 0 chrX 139497904 139497927 -37476213 + (A)n Simple_repeat Simple_repeat 1 23 0 2302 84 0 0 chrX 139498067 139498354 -37475786 - AluSg SINE Alu -23 287 1 1463 173 63 4 chrX 139498566 139498837 -37475303 + L1MB7 LINE L1 5893 6179 -5 811 168 0 46 chrX 139499603 139499734 -37474406 + FLAM_A SINE Alu 1 125 -8 1884 167 0 10 chrX 139499793 139500099 -37474041 + AluJo SINE Alu 1 303 -9 351 281 75 41 chrX 139500203 139500349 -37473791 - MIR3 SINE MIR -34 174 24 2133 106 44 0 chrX 139501396 139501689 -37472451 + AluSx SINE Alu 1 306 -6 333 0 0 0 chrX 139502117 139502154 -37471986 + (CA)n Simple_repeat Simple_repeat 2 38 0 1758 178 3 19 chrX 139502192 139502507 -37471633 - AluJo SINE Alu -2 310 1 408 158 50 193 chrX 139502611 139502729 -37471411 + MER69A DNA AcHobo 4 83 -2443 2070 138 0 3 chrX 139502729 139503027 -37471113 - AluJb SINE Alu -15 297 1 408 158 50 193 chrX 139503027 139503110 -37471030 + MER69A DNA AcHobo 83 176 -1 515 258 146 6 chrX 139503606 139503784 -37470356 + MIR SINE MIR 9 211 -51 1977 144 0 16 chrX 139503789 139504101 -37470039 + AluJo SINE Alu 1 307 -5 545 245 99 63 chrX 139504154 139504207 -37469933 + MIR SINE MIR 24 74 -188 2290 109 0 0 chrX 139504207 139504509 -37469631 - AluSx SINE Alu -10 302 1 545 245 99 63 chrX 139504509 139504678 -37469462 + MIR SINE MIR 74 244 -18 721 191 0 29 chrX 139504975 139505111 -37469029 + AluJb SINE Alu 2 133 -179 470 264 8 33 chrX 139506254 139506375 -37467765 - MIR SINE MIR -143 119 2 1599 175 41 7 chrX 139506531 139506822 -37467318 + MLT1B LTR MaLR 1 301 -89 396 178 33 0 chrX 139507061 139507151 -37466989 + LTR16A1 LTR ERVL 60 152 -305 463 239 68 18 chrX 139507209 139507372 -37466768 + LTR16A1 LTR ERVL 287 457 0 3449 127 51 97 chrX 139507733 139508014 -37466126 + L1MA8 LINE L1 5080 5372 -919 1596 176 22 35 chrX 139508014 139508326 -37465814 - AluJo SINE Alu -4 308 1 3449 127 51 97 chrX 139508326 139508783 -37465357 + L1MA8 LINE L1 5372 5807 -484 2350 100 0 6 chrX 139508783 139509094 -37465046 + AluSq SINE Alu 5 313 0 3449 127 51 97 chrX 139509094 139509243 -37464897 + L1MA8 LINE L1 5807 5961 -330 354 236 136 18 chrX 139509486 139509596 -37464544 + MER97c DNA MER1_type? 1 123 -967 645 262 58 0 chrX 139509803 139509933 -37464207 + MER3 DNA MER1_type 16 160 -49 2506 62 3 3 chrX 139509933 139510239 -37463901 - AluY SINE Alu -5 306 1 645 262 58 0 chrX 139510239 139510280 -37463860 + MER3 DNA MER1_type 160 197 -12 2062 125 24 0 chrX 139511211 139511506 -37462634 - AluSx SINE Alu -10 302 1 2695 39 3 0 chrX 139511899 139512209 -37461931 + AluY SINE Alu 1 311 0 198 143 0 0 chrX 139513080 139513115 -37461025 + (TCC)n Simple_repeat Simple_repeat 2 36 0 203 190 354 23 chrX 139513200 139513304 -37460836 - MIR SINE MIR -48 160 29 5593 168 9 45 chrX 139514368 139514538 -37459602 - L1MC2 LINE L1 -11 6333 6158 2208 113 10 0 chrX 139514538 139514838 -37459302 + AluSx SINE Alu 1 303 -9 5593 168 9 45 chrX 139514838 139516055 -37458085 - L1MC2 LINE L1 -186 6158 4988 1901 161 3 3 chrX 139518512 139518810 -37455330 - AluJb SINE Alu -14 298 1 328 266 38 38 chrX 139519257 139519413 -37454727 + MIR SINE MIR 10 165 -58 1464 162 63 22 chrX 139519704 139519975 -37454165 - AluJb SINE Alu -29 283 2 721 200 23 0 chrX 139520035 139520165 -37453975 - FLAM_A SINE Alu 0 133 1 2108 117 3 7 chrX 139520923 139521231 -37452909 - AluSq SINE Alu -6 307 1 649 74 0 0 chrX 139521529 139521610 -37452530 - AluY SINE Alu -228 82 2 240 214 0 0 chrX 139521612 139521668 -37452472 - MIR SINE MIR -59 203 148 22 0 0 0 chrX 139521726 139521748 -37452392 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chrX 139521893 139521918 -37452222 + (CA)n Simple_repeat Simple_repeat 2 26 0 579 325 16 16 chrX 139521995 139522186 -37451954 - MIR SINE MIR -65 197 7 538 269 101 22 chrX 139522661 139522929 -37451211 + L2 LINE L2 3020 3308 -5 1740 188 3 7 chrX 139523198 139523496 -37450644 + AluJo SINE Alu 1 297 -15 562 262 79 65 chrX 139524183 139524473 -37449667 + MLT1I LTR MaLR 114 407 -2 222 37 0 0 chrX 139524831 139524858 -37449282 + (A)n Simple_repeat Simple_repeat 1 27 0 1274 118 0 0 chrX 139525071 139525249 -37448891 - AluSg/x SINE Alu -11 301 124 2417 43 0 0 chrX 139525933 139526246 -37447894 + AluY SINE Alu 5 317 0 904 145 0 14 chrX 139526575 139526720 -37447420 + FLAM_C SINE Alu 1 143 0 1905 107 7 7 chrX 139526969 139527240 -37446900 + AluSc SINE Alu 1 271 -38 2074 110 7 20 chrX 139527352 139527644 -37446496 - AluSx SINE Alu -24 288 1 251 276 0 0 chrX 139528610 139528668 -37445472 + L2 LINE L2 3214 3271 -1 2193 65 22 11 chrX 139528919 139529227 -37444913 - AluSg SINE Alu 0 311 1 27 0 0 0 chrX 139530322 139530349 -37443791 + AT_rich Low_complexity Low_complexity 1 27 0 381 116 0 0 chrX 139530829 139530898 -37443242 + (A)n Simple_repeat Simple_repeat 1 69 0 308 322 34 0 chrX 139530918 139531064 -37443076 + L1M4 LINE L1 3043 3193 -2953 267 309 22 36 chrX 139531064 139531274 -37442866 + GA-rich Low_complexity Low_complexity 1 207 0 38 39 0 0 chrX 139531278 139531330 -37442810 + AT_rich Low_complexity Low_complexity 1 52 0 1887 157 0 7 chrX 139531639 139531939 -37442201 - AluJb SINE Alu -14 298 1 1211 202 19 9 chrX 139532025 139532238 -37441902 - MER58A DNA MER1_type -8 216 2 634 289 103 38 chrX 139533023 139533390 -37440750 + MLT1K LTR MaLR 198 588 0 399 202 0 0 chrX 139533784 139533873 -37440267 + (CA)n Simple_repeat Simple_repeat 2 90 0 279 295 0 25 chrX 139534439 139534536 -37439604 - MIR SINE MIR -56 152 60 194 241 0 69 chrX 139534687 139534745 -37439395 - L3 LINE CR1 -1 1576 1523 2129 149 74 0 chrX 139534943 139535306 -37438834 + MLT1B LTR MaLR 1 390 0 207 0 0 0 chrX 139536398 139536421 -37437719 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 369 0 0 0 chrX 139536420 139536461 -37437679 + (GA)n Simple_repeat Simple_repeat 2 42 0 550 254 119 21 chrX 139536466 139536659 -37437481 + MIR SINE MIR 46 257 -5 435 123 0 0 chrX 139736715 139736780 -37237360 + AluSp/q SINE Alu 234 298 -15 2831 118 29 7 chrX 139737615 139738065 -37236075 - LTR46 LTR ERV1 0 460 1 3199 222 35 34 chrX 139739996 139740858 -37233282 + L1M1 LINE L1 13 875 -6690 4036 130 14 2 chrX 139740859 139741497 -37232643 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 139741514 139741857 -37232283 + L1MA8 LINE L1 5937 6286 -5 2244 96 3 16 chrX 139742567 139742879 -37231261 + AluSx SINE Alu 1 308 -4 452 198 0 9 chrX 139743106 139743212 -37230928 + GA-rich Low_complexity Low_complexity 3 107 0 605 267 88 65 chrX 139743397 139743659 -37230481 + L2 LINE L2 2708 2975 -339 2103 133 3 0 chrX 139743701 139744010 -37230130 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 139744147 139744194 -37229946 + L2 LINE L2 3261 3308 -5 740 310 9 9 chrX 139744424 139744673 -37229467 + MIR SINE MIR 18 262 0 645 69 0 0 chrX 139744733 139744820 -37229320 + (CA)n Simple_repeat Simple_repeat 2 88 0 2098 121 3 0 chrX 139744820 139745110 -37229030 - AluY SINE Alu -20 291 1 233 128 26 0 chrX 139745147 139745186 -37228954 - MIR3 SINE MIR -10 198 159 1329 118 69 8 chrX 139745335 139745580 -37228560 + LTR19A LTR ERV1 1 260 -226 1755 106 8 4 chrX 139745580 139745825 -37228315 - AluSq SINE Alu -67 246 1 8811 95 60 67 chrX 139745825 139747457 -37226683 + LTR19-int LTR ERV1 1462 3050 -2536 4770 143 62 25 chrX 139747478 139748491 -37225649 + LTR19-int LTR ERV1 3979 5029 -1569 2266 99 3 3 chrX 139748491 139748785 -37225355 + AluSg1 SINE Alu 1 294 -15 2831 118 29 7 chrX 139749620 139750070 -37224070 - LTR46 LTR ERV1 0 460 1 3220 220 35 34 chrX 139752001 139752863 -37221277 + L1M1 LINE L1 13 875 -6690 4036 130 14 2 chrX 139752864 139753502 -37220638 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 139753519 139753862 -37220278 + L1MA8 LINE L1 5937 6286 -5 2244 96 3 16 chrX 139754572 139754884 -37219256 + AluSx SINE Alu 1 308 -4 452 198 0 9 chrX 139755111 139755217 -37218923 + GA-rich Low_complexity Low_complexity 3 107 0 605 267 88 65 chrX 139755402 139755664 -37218476 + L2 LINE L2 2708 2975 -339 2103 133 3 0 chrX 139755706 139756015 -37218125 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 139756152 139756199 -37217941 + L2 LINE L2 3261 3308 -5 740 310 9 9 chrX 139756429 139756678 -37217462 + MIR SINE MIR 18 262 0 609 72 0 0 chrX 139756738 139756821 -37217319 + (CA)n Simple_repeat Simple_repeat 2 84 0 2098 121 3 0 chrX 139756821 139757111 -37217029 - AluY SINE Alu -20 291 1 233 128 26 0 chrX 139757148 139757187 -37216953 - MIR3 SINE MIR -10 198 159 1329 118 69 8 chrX 139757336 139757581 -37216559 + LTR19A LTR ERV1 1 260 -226 1755 106 8 4 chrX 139757581 139757826 -37216314 - AluSq SINE Alu -67 246 1 12427 85 43 41 chrX 139757826 139760907 -37213233 + LTR19-int LTR ERV1 1462 4619 -967 4820 92 10 7 chrX 139760906 139761615 -37212525 + LTR19-int LTR ERV1 4824 5534 -52 * 6633 188 20 16 chrX 139761679 139764163 -37209977 - L1 LINE L1 -2810 4755 2262 * 12169 57 2 1 chrX 139764152 139765811 -37208329 - L1PA4 LINE L1 -3549 2597 936 21585 49 9 0 chrX 139765811 139769345 -37204795 + L1PA4 LINE L1 2607 6155 0 1249 275 54 11 chrX 139769723 139770398 -37203742 + L1M4c LINE L1 2098 2810 -3572 357 296 0 64 chrX 139770400 139770525 -37203615 - L2 LINE L2 -12 3301 3185 1864 142 26 49 chrX 139770619 139771010 -37203130 - MSTC LTR MaLR -11 417 55 23 0 0 0 chrX 139771010 139771033 -37203107 + AT_rich Low_complexity Low_complexity 1 23 0 1864 142 26 49 chrX 139771033 139771087 -37203053 - MSTC LTR MaLR -373 55 1 280 321 0 69 chrX 139771092 139771223 -37202917 + L2 LINE L2 3188 3309 -4 30 27 0 0 chrX 139771510 139771547 -37202593 + AT_rich Low_complexity Low_complexity 1 37 0 262 313 87 0 chrX 139771722 139771837 -37202303 + MIR SINE MIR 64 188 -74 2127 98 7 11 chrX 139771856 139772142 -37201998 + AluSc SINE Alu 1 285 -24 2016 89 0 0 chrX 139772630 139772887 -37201253 - AluSx SINE Alu -17 295 39 227 306 59 12 chrX 139773435 139773520 -37200620 - L2 LINE L2 -5 3267 3179 327 353 49 27 chrX 139773611 139773835 -37200305 - MIR SINE MIR -31 231 3 1508 279 67 19 chrX 139774517 139775291 -37198849 - L1ME3 LINE L1 -7 6653 5843 438 278 67 14 chrX 139775292 139775501 -37198639 - L1ME3 LINE L1 -888 5756 5537 * 1148 259 77 25 chrX 139775499 139776079 -37198061 - L1ME3 LINE L1 -1310 5334 4715 492 18 0 0 chrX 139776079 139776136 -37198004 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 1148 259 77 25 chrX 139776136 139776207 -37197933 - L1ME3 LINE L1 -1929 4715 4649 498 283 112 35 chrX 139776219 139776593 -37197547 - L1ME3 LINE L1 -2091 4553 4151 1692 215 69 43 chrX 139776593 139777085 -37197055 - MLT1D LTR MaLR 0 505 1 1935 99 43 119 chrX 139777100 139777251 -37196889 + THE1B LTR MaLR 1 162 -202 2185 110 7 7 chrX 139777251 139777552 -37196588 - AluSx SINE Alu -11 301 1 1935 99 43 119 chrX 139777552 139777741 -37196399 + THE1B LTR MaLR 162 310 -54 1876 126 54 0 chrX 139777741 139778018 -37196122 - AluSx SINE Alu -8 304 13 1935 99 43 119 chrX 139778018 139778070 -37196070 + THE1B LTR MaLR 310 364 0 2463 69 3 0 chrX 139778070 139778405 -37195735 + THE1B-int LTR MaLR 1 336 -1244 5904 52 147 67 chrX 139778405 139779489 -37194651 - MER11A LTR ERVK 0 1266 3 8335 107 1 25 chrX 139779491 139779658 -37194482 + THE1B-int LTR MaLR 331 501 -1079 2190 125 0 6 chrX 139779658 139779970 -37194170 + AluSg SINE Alu 1 310 0 8335 107 1 25 chrX 139779970 139781079 -37193061 + THE1B-int LTR MaLR 501 1576 -4 2088 139 51 20 chrX 139781083 139781436 -37192704 + THE1B LTR MaLR 1 364 0 609 239 8 0 chrX 139781495 139781625 -37192515 - FLAM_A SINE Alu -1 132 2 407 320 58 22 chrX 139782079 139782492 -37191648 - L1ME3 LINE L1 -4653 2172 1745 202 206 0 0 chrX 139782505 139782539 -37191601 + (CATA)n Simple_repeat Simple_repeat 1 34 0 1769 128 0 0 chrX 139782540 139782789 -37191351 - AluY SINE Alu -28 283 35 2314 91 0 0 chrX 139782913 139783211 -37190929 - AluSc SINE Alu -11 298 1 4257 227 96 62 chrX 139783222 139783814 -37190326 - L1MC3 LINE L1 -8 7777 7206 254 263 0 13 chrX 139783814 139783890 -37190250 - MLT1F1 LTR MaLR -460 107 33 4257 227 96 62 chrX 139783890 139784767 -37189373 - L1MC3 LINE L1 -579 7206 6181 2049 120 7 3 chrX 139784929 139785238 -37188902 + AluSq SINE Alu 1 310 -3 243 61 0 0 chrX 139785314 139785347 -37188793 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1759 246 44 6 chrX 139785579 139786054 -37188086 + MER90 LTR ERV1 10 502 -112 299 194 0 56 chrX 139786184 139786256 -37187884 + MER90 LTR ERV1 520 587 -27 386 317 67 37 chrX 139786311 139786686 -37187454 - L1ME3 LINE L1 -5918 907 522 1077 163 0 0 chrX 139786720 139786916 -37187224 + L1MA5A LINE L1 6099 6294 -3 204 146 49 0 chrX 139787192 139787233 -37186907 - L2 LINE L2 -10 3303 3261 2573 126 3 18 chrX 139787840 139788221 -37185919 - THE1C LTR MaLR 0 375 1 647 288 0 6 chrX 139788706 139788869 -37185271 - MIR SINE MIR -54 208 47 494 205 18 36 chrX 139789285 139789397 -37184743 - L1ME3 LINE L1 -6419 123 14 279 307 0 13 chrX 139789617 139789692 -37184448 + MLT1J2 LTR MaLR 1 74 -519 2025 203 21 4 chrX 139789692 139790105 -37184035 + MLT2B1 LTR ERVL 1 516 -38 423 98 0 0 chrX 139790105 139790166 -37183974 + (TC)n Simple_repeat Simple_repeat 1 61 0 375 86 0 35 chrX 139790166 139790224 -37183916 + MLT2C2 LTR ERVL 406 461 -3 497 229 128 22 chrX 139790461 139790640 -37183500 + MLT1F LTR MaLR 337 534 -8 23 78 0 0 chrX 139791087 139791138 -37183002 + AT_rich Low_complexity Low_complexity 1 51 0 37607 78 38 3 chrX 139791156 139797092 -37177048 + L1PA5 LINE L1 4 6154 0 2351 71 14 0 chrX 139797182 139797479 -37176661 - AluSp SINE Alu -12 301 1 1502 193 7 10 chrX 139797516 139797683 -37176457 - AluJb SINE Alu -23 289 122 375 23 0 0 chrX 139797683 139797727 -37176413 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1502 193 7 10 chrX 139797727 139797849 -37176291 - AluJb SINE Alu -190 122 1 373 260 92 91 chrX 139798050 139798360 -37175780 + MLT1J2 LTR MaLR 106 450 0 2285 99 3 0 chrX 139798596 139798898 -37175242 - AluSx SINE Alu 0 312 10 376 302 22 66 chrX 139799027 139799209 -37174931 + MLT1H LTR MaLR 134 307 -242 260 286 38 29 chrX 139799231 139799336 -37174804 + MLT1H LTR MaLR 431 536 -13 6958 113 14 23 chrX 139800335 139801471 -37172669 - L1MA1 LINE L1 0 6302 5178 5413 222 24 19 chrX 139801476 139801519 -37172621 - L1M1 LINE L1 -6358 1207 1166 1908 147 7 26 chrX 139801519 139801825 -37172315 + AluJb SINE Alu 1 300 -12 5413 222 24 19 chrX 139801825 139802970 -37171170 - L1M1 LINE L1 -6399 1166 12 2144 79 7 18 chrX 139803348 139803627 -37170513 - AluSq SINE Alu -37 276 1 2526 173 109 27 chrX 139804063 139804584 -37169556 - LTR6A LTR ERV1 0 564 1 349 274 43 91 chrX 139804955 139805047 -37169093 - MIR3 SINE MIR -2 206 126 2120 83 0 61 chrX 139805047 139805360 -37168780 + AluSx SINE Alu 1 294 -18 349 274 43 91 chrX 139805360 139805453 -37168687 - MIR3 SINE MIR -82 126 30 995 264 42 3 chrX 139805730 139806041 -37168099 - MER33 DNA MER1_type -1 323 1 21 36 0 0 chrX 139806111 139806139 -37168001 + AT_rich Low_complexity Low_complexity 1 28 0 2162 111 58 63 chrX 139806924 139806978 -37167162 + THE1B LTR MaLR 4 57 -307 2274 92 30 0 chrX 139806978 139807273 -37166867 - AluSx SINE Alu -8 304 1 2162 111 58 63 chrX 139807273 139807580 -37166560 + THE1B LTR MaLR 57 363 -1 2033 98 7 49 chrX 139807885 139808192 -37165948 - AluSx SINE Alu -18 294 1 2244 88 0 26 chrX 139809063 139809369 -37164771 + AluSg SINE Alu 1 298 -12 5793 165 18 22 chrX 139809512 139810818 -37163322 + L1MA6 LINE L1 4907 6209 -91 2309 104 0 0 chrX 139810818 139811125 -37163015 - AluSc SINE Alu -2 307 1 5793 165 18 22 chrX 139811125 139811217 -37162923 + L1MA6 LINE L1 6209 6300 0 351 267 75 33 chrX 139811283 139811403 -37162737 + HAL1 LINE L1 1228 1352 -1155 22 0 0 0 chrX 139811477 139811499 -37162641 + AT_rich Low_complexity Low_complexity 1 22 0 248 264 8 33 chrX 139811922 139812043 -37162097 + L1MDa LINE L1 2442 2559 -3981 666 229 0 8 chrX 139812108 139812239 -37161901 + MER58B DNA MER1_type 203 332 -9 232 359 45 6 chrX 139812481 139812637 -37161503 + L1MDa LINE L1 2821 2982 -3558 2104 118 0 16 chrX 139812711 139813017 -37161123 - AluSq SINE Alu -12 301 1 612 317 9 5 chrX 139813058 139813279 -37160861 + L1ME4a LINE L1 5570 5791 -330 302 200 145 41 chrX 139813948 139814093 -37160047 + L1ME4a LINE L1 5959 6118 -3 195 321 0 0 chrX 139814717 139814770 -37159370 + MIR3 SINE MIR 117 169 -39 24 0 0 0 chrX 139815489 139815513 -37158627 + AT_rich Low_complexity Low_complexity 1 24 0 946 294 74 32 chrX 139816425 139816857 -37157283 + LTR16A LTR ERVL 1 450 0 300 323 40 8 chrX 139816922 139817046 -37157094 + L1MEd LINE L1 32 159 -5960 941 293 45 63 chrX 139817162 139817440 -37156700 + MLT1I LTR MaLR 1 271 -138 2073 89 0 77 chrX 139817440 139817753 -37156387 + AluSx SINE Alu 1 289 -23 941 293 45 63 chrX 139817753 139817870 -37156270 + MLT1I LTR MaLR 271 389 -20 297 339 8 8 chrX 139817961 139818079 -37156061 - LTR67 LTR ERVL -6 551 434 289 305 102 47 chrX 139818538 139818794 -37155346 - MLT1L LTR MaLR 0 615 346 490 249 36 67 chrX 139818913 139819106 -37155034 - MLT1L LTR MaLR -415 200 14 1575 103 0 5 chrX 139819353 139819567 -37154573 + AluSc SINE Alu 80 292 -17 520 241 0 0 chrX 139820556 139820668 -37153472 - MLT2B1 LTR ERVL -408 112 1 668 275 56 104 chrX 139820759 139820932 -37153208 - L2 LINE L2 -29 3284 3104 2168 105 3 0 chrX 139820932 139821227 -37152913 + AluSp SINE Alu 1 296 -17 668 275 56 104 chrX 139821227 139821617 -37152523 - L2 LINE L2 -209 3104 2754 395 242 36 67 chrX 139821655 139821849 -37152291 - LTR37B LTR ERV1 -77 391 204 473 353 16 16 chrX 139822106 139822125 -37152015 - L2 LINE L2 -561 2753 2735 2474 173 42 5 chrX 139822125 139822535 -37151605 + MSTB LTR MaLR 2 426 0 473 353 16 16 chrX 139822535 139822767 -37151373 - L2 LINE L2 -578 2736 2502 1652 259 91 35 chrX 139823019 139823678 -37150462 + L2 LINE L2 1592 2287 -1027 23 78 0 0 chrX 139823678 139823729 -37150411 + AT_rich Low_complexity Low_complexity 1 51 0 2316 89 3 26 chrX 139823732 139824045 -37150095 + AluY SINE Alu 1 306 -5 4718 143 19 42 chrX 139824045 139824536 -37149604 + L1PB4 LINE L1 5322 5823 -333 486 49 0 0 chrX 139824536 139824597 -37149543 + (TG)n Simple_repeat Simple_repeat 2 62 0 4718 143 19 42 chrX 139824597 139824634 -37149506 + L1PB4 LINE L1 5823 5859 -297 2237 89 17 7 chrX 139824634 139824936 -37149204 + AluSq SINE Alu 1 305 -8 4718 143 19 42 chrX 139824936 139825254 -37148886 + L1PB4 LINE L1 5859 6149 -7 1192 236 36 33 chrX 139825345 139825679 -37148461 + MLT1A1 LTR MaLR 10 344 -21 214 213 67 40 chrX 139825691 139825766 -37148374 - MIR SINE MIR -25 237 161 626 71 24 12 chrX 139825768 139825853 -37148287 - THE1A LTR MaLR 0 355 270 2199 68 18 7 chrX 139825853 139826133 -37148007 + AluSq SINE Alu 1 283 -30 232 237 0 0 chrX 139826159 139826218 -37147922 - L1MCa LINE L1 -4362 2064 2006 198 0 0 0 chrX 139826218 139826240 -37147900 + (CA)n Simple_repeat Simple_repeat 1 22 0 1589 255 133 30 chrX 139826241 139826994 -37147146 + L2 LINE L2 2452 3313 0 2254 82 7 0 chrX 139827259 139827551 -37146589 - AluSc SINE Alu -15 294 1 605 56 0 0 chrX 139828912 139828984 -37145156 + Alu SINE Alu 229 300 -9 23 33 0 0 chrX 139829244 139829274 -37144866 + AT_rich Low_complexity Low_complexity 1 30 0 807 213 0 44 chrX 139829444 139829484 -37144656 - MER58B DNA MER1_type -2079 341 301 2226 94 0 3 chrX 139829484 139829782 -37144358 + AluY SINE Alu 1 297 -14 807 213 0 44 chrX 139829782 139829924 -37144216 - MER58B DNA MER1_type -2119 301 167 1688 167 3 37 chrX 139829967 139830266 -37143874 + AluJb SINE Alu 5 293 -19 227 31 31 0 chrX 139830306 139830338 -37143802 + (CA)n Simple_repeat Simple_repeat 2 34 0 262 248 48 9 chrX 139830529 139830634 -37143506 + L1MB1 LINE L1 3205 3313 -2833 1664 84 0 9 chrX 139830634 139830860 -37143280 + LTR17 LTR ERV1 3 226 -554 232 225 83 58 chrX 139830860 139830980 -37143160 + LTR25 LTR ERV1 595 717 -77 1694 161 62 0 chrX 139831183 139831505 -37142635 + LTR17 LTR ERV1 367 708 -72 2472 267 68 56 chrX 139831530 139831588 -37142552 + L1MB1 LINE L1 3305 3361 -2785 2234 103 3 0 chrX 139831588 139831888 -37142252 + AluSq SINE Alu 1 301 -12 2472 267 68 56 chrX 139831888 139832361 -37141779 + L1MB1 LINE L1 3361 3827 -2319 2556 199 82 15 chrX 139832361 139832888 -37141252 - MER68 LTR ERV1 0 562 1 2472 267 68 56 chrX 139832888 139833673 -37140467 + L1MB1 LINE L1 3827 4638 -1508 495 213 41 25 chrX 139833674 139833796 -37140344 + L1M1 LINE L1 22 145 -7420 636 131 0 10 chrX 139833796 139833895 -37140245 + MER4A LTR ERV1 1 98 -566 1861 111 3 72 chrX 139833895 139834121 -37140019 + MER4A LTR ERV1 261 512 -152 2218 99 0 7 chrX 139834121 139834425 -37139715 + AluSg SINE Alu 1 302 -8 1861 111 3 72 chrX 139834425 139834569 -37139571 + MER4A LTR ERV1 512 664 0 3551 214 28 38 chrX 139834569 139834851 -37139289 + L1M1 LINE L1 143 426 -7139 4132 89 15 6 chrX 139834851 139835400 -37138740 - MER41A LTR ERV1 0 554 1 3551 214 28 38 chrX 139835400 139835585 -37138555 + L1M1 LINE L1 426 611 -6954 2057 126 19 7 chrX 139835585 139835894 -37138246 - AluSq SINE Alu 0 313 1 3551 214 28 38 chrX 139835894 139836210 -37137930 + L1M1 LINE L1 611 919 -6646 1245 185 27 36 chrX 139836208 139836939 -37137201 + L1MB1 LINE L1 5104 5962 -206 * 2498 72 0 0 chrX 139836939 139837245 -37136895 + AluSc SINE Alu 1 306 -3 1245 185 27 36 chrX 139837245 139837286 -37136854 + L1MB1 LINE L1 5962 6002 -166 1219 196 44 47 chrX 139837582 139837942 -37136198 - L1MB7 LINE L1 -48 6130 5767 1071 121 18 0 chrX 139837933 139838098 -37136042 - L1MB1 LINE L1 -17 6172 6005 * 573 343 34 8 chrX 139838126 139838362 -37135778 + LTR16C LTR ERVL 160 401 -90 239 217 0 0 chrX 139838522 139838568 -37135572 + (CA)n Simple_repeat Simple_repeat 2 47 0 2213 103 0 3 chrX 139838734 139839024 -37135116 + AluSx SINE Alu 1 289 -23 2620 81 3 8 chrX 139839171 139839528 -37134612 - THE1A LTR MaLR 0 355 1 417 294 108 31 chrX 139840012 139840533 -37133607 - L1M4 LINE L1 -2410 3736 3176 328 343 89 14 chrX 139840535 139840748 -37133392 - L1M4 LINE L1 -3013 3133 2905 1681 289 26 41 chrX 139840838 139841327 -37132813 - HAL1 LINE L1 -521 1986 1512 2104 95 14 0 chrX 139841327 139841612 -37132528 - AluSp SINE Alu -24 289 1 1681 289 26 41 chrX 139841612 139841904 -37132236 - HAL1 LINE L1 -995 1512 1217 248 250 105 0 chrX 139842181 139842257 -37131883 - L2 LINE L2 -50 3222 3139 2345 89 0 0 chrX 139842288 139842581 -37131559 + AluY SINE Alu 1 293 -18 263 293 41 82 chrX 139842872 139843019 -37131121 - L2 LINE L2 -263 3009 2869 328 118 26 92 chrX 139843063 139843139 -37131001 + AluSq SINE Alu 1 71 -232 1824 105 4 0 chrX 139843149 139843396 -37130744 + AluSq SINE Alu 53 300 -13 2305 88 3 10 chrX 139843400 139843707 -37130433 + AluSp SINE Alu 3 307 -6 581 257 22 56 chrX 139844073 139844252 -37129888 + MER5B DNA MER1_type 5 177 -1 27 22 0 22 chrX 139844344 139844355 -37129785 + AT_rich Low_complexity Low_complexity 1 11 -33 2278 93 0 0 chrX 139844355 139844644 -37129496 - AluSg SINE Alu -21 289 1 27 22 0 22 chrX 139844644 139844677 -37129463 + AT_rich Low_complexity Low_complexity 11 44 0 1429 162 3 63 chrX 139844684 139844968 -37129172 + AluJb SINE Alu 6 272 -40 414 0 0 0 chrX 139844972 139845018 -37129122 + (TA)n Simple_repeat Simple_repeat 1 46 0 280 302 103 8 chrX 139845524 139845650 -37128490 - L2 LINE L2 -4 3309 3172 183 428 22 6 chrX 139845881 139846061 -37128079 - L2 LINE L2 -625 2689 2507 483 305 130 52 chrX 139846129 139846870 -37127270 - L2 LINE L2 -6 3307 1592 199 271 34 51 chrX 139847389 139847448 -37126692 + L3 LINE CR1 1516 1573 -4 224 279 16 0 chrX 139848643 139848704 -37125436 + L2 LINE L2 3246 3307 -6 818 290 75 9 chrX 139849252 139849573 -37124567 + MER93a LTR ERV1 61 402 0 620 203 28 87 chrX 139849594 139849962 -37124178 + Charlie2 DNA MER1_type 1856 2244 -618 2477 61 3 0 chrX 139849962 139850259 -37123881 - AluSp SINE Alu -15 298 1 620 203 28 87 chrX 139850259 139850307 -37123833 + Charlie2 DNA MER1_type 2244 2293 -569 246 250 52 17 chrX 139850377 139850493 -37123647 + L1ME4a LINE L1 5980 6099 -22 4095 53 4 0 chrX 139851805 139852316 -37121824 + LTR10D LTR ERV1 1 513 0 1708 291 102 34 chrX 139852413 139852723 -37121417 - L2 LINE L2 -1177 2137 1849 2141 108 0 44 chrX 139852723 139853039 -37121101 - AluY SINE Alu -9 302 1 1708 291 102 34 chrX 139853039 139853632 -37120508 - L2 LINE L2 -1465 1849 1173 821 268 16 0 chrX 139854383 139854577 -37119563 + MIR SINE MIR 1 197 -65 251 316 26 0 chrX 139854583 139854659 -37119481 + MIR SINE MIR 64 141 -67 2296 74 0 51 chrX 139854867 139855178 -37118962 + AluSg SINE Alu 1 295 -15 2566 10 0 0 chrX 139855496 139855786 -37118354 + L1PA5 LINE L1 5858 6147 -7 288 0 0 0 chrX 139856134 139856166 -37117974 + (CA)n Simple_repeat Simple_repeat 1 32 0 293 326 31 8 chrX 139857086 139857215 -37116925 - MIR SINE MIR -70 192 61 24 41 0 20 chrX 139857379 139857391 -37116749 + AT_rich Low_complexity Low_complexity 1 12 -36 1501 158 14 14 chrX 139857391 139857683 -37116457 + L1MA8 LINE L1 5998 6289 -2 24 41 0 20 chrX 139857683 139857719 -37116421 + AT_rich Low_complexity Low_complexity 12 48 0 2549 206 63 31 chrX 139857764 139858352 -37115788 - MER90 LTR ERV1 -7 607 1 301 195 195 8 chrX 139858586 139858704 -37115436 + L1MC/D LINE L1 5293 5432 -746 233 297 116 22 chrX 139858781 139859013 -37115127 + L1MC/D LINE L1 5554 5807 -2001 238 245 21 11 chrX 139859126 139859137 -37115003 + (TA)n Simple_repeat Simple_repeat 1 10 -85 1593 173 0 62 chrX 139859137 139859443 -37114697 + AluJb SINE Alu 1 287 -25 238 245 21 11 chrX 139859443 139859525 -37114615 + (TA)n Simple_repeat Simple_repeat 10 95 0 32 57 0 0 chrX 139859662 139859715 -37114425 + AT_rich Low_complexity Low_complexity 1 53 0 2425 86 3 0 chrX 139859715 139860016 -37114124 - AluSp SINE Alu -11 302 1 2486 266 38 48 chrX 139860040 139860268 -37113872 + L1MEc LINE L1 46 275 -6121 2032 108 0 10 chrX 139860268 139860589 -37113551 + AluSc SINE Alu 1 309 0 2486 266 38 48 chrX 139860589 139861253 -37112887 + L1MEc LINE L1 275 928 -5468 2266 88 10 0 chrX 139861253 139861550 -37112590 + AluY SINE Alu 1 300 -11 2486 266 38 48 chrX 139861550 139861733 -37112407 + L1MEc LINE L1 928 1111 -5285 1766 224 60 7 chrX 139861742 139862179 -37111961 + MLT1C LTR MaLR 4 463 -4 3413 253 51 24 chrX 139862237 139862979 -37111161 + L1MEc LINE L1 2373 3094 -3121 2081 117 0 0 chrX 139862979 139863253 -37110887 + AluSx SINE Alu 1 274 -38 3413 253 51 24 chrX 139863253 139864110 -37110030 + L1MEc LINE L1 3094 4014 -2201 21 0 0 0 chrX 139864110 139864131 -37110009 + AT_rich Low_complexity Low_complexity 1 21 0 6257 11 1 0 chrX 139864131 139864872 -37109268 - L1HS LINE L1 0 6155 5414 993 0 0 0 chrX 139864874 139864981 -37109159 - U6 snRNA snRNA 0 107 1 1263 245 66 16 chrX 139864982 139865542 -37108598 + L1MEc LINE L1 4003 4590 -1625 1532 235 55 41 chrX 139865636 139866241 -37107899 + L1MEc LINE L1 4595 5207 -1008 1024 220 67 86 chrX 139866242 139866614 -37107526 - MLT1A1 LTR MaLR 0 365 1 3259 216 16 17 chrX 139866614 139867307 -37106833 - MLT1A1-int LTR MaLR 0 1735 1044 263 149 0 0 chrX 139867293 139867340 -37106800 - MLT1A1-int LTR MaLR -573 1162 1116 * 1762 137 74 49 chrX 139867342 139867506 -37106634 + THE1C LTR MaLR 1 159 -216 2589 113 0 16 chrX 139867506 139867887 -37106253 + THE1C LTR MaLR 1 375 0 1762 137 74 49 chrX 139867887 139868088 -37106052 + THE1C LTR MaLR 159 375 0 5009 179 22 46 chrX 139868088 139869181 -37104959 - MLT1A1-int LTR MaLR -668 1067 1 389 263 194 0 chrX 139869181 139869341 -37104799 - MLT1A1 LTR MaLR 0 374 184 711 277 200 19 chrX 139869373 139869738 -37104402 + L2 LINE L2 2880 3310 -3 2949 6 0 0 chrX 139869996 139870314 -37103826 + AluYb8 SINE Alu 1 318 0 209 111 0 74 chrX 139870526 139870580 -37103560 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 2159 109 10 10 chrX 139870686 139870989 -37103151 + AluSg SINE Alu 1 303 -7 1691 169 34 14 chrX 139871138 139871434 -37102706 - AluJb SINE Alu -10 302 1 28 71 0 0 chrX 139871501 139871557 -37102583 + AT_rich Low_complexity Low_complexity 1 56 0 2155 131 0 3 chrX 139872132 139872429 -37101711 + AluSg SINE Alu 1 296 -14 330 325 77 0 chrX 139872685 139872802 -37101338 - MIR3 SINE MIR -49 159 34 400 321 113 38 chrX 139873352 139873670 -37100470 + L3 LINE CR1 715 1056 -521 * 557 286 56 17 chrX 139873639 139873817 -37100323 + MIR SINE MIR 57 241 -21 189 0 0 0 chrX 139873824 139873845 -37100295 + (TTA)n Simple_repeat Simple_repeat 2 22 0 885 338 102 27 chrX 139873877 139874327 -37099813 + L3 LINE CR1 1093 1576 -1 2310 92 3 0 chrX 139874592 139874909 -37099231 + AluSp SINE Alu 1 318 0 2332 100 0 3 chrX 139874962 139875263 -37098877 + AluSx SINE Alu 1 300 -12 332 305 107 25 chrX 139875353 139875550 -37098590 + L1MD2 LINE L1 5673 5885 -474 26 30 0 0 chrX 139875781 139875814 -37098326 + AT_rich Low_complexity Low_complexity 1 33 0 1974 125 0 55 chrX 139875817 139876144 -37097996 + AluSg SINE Alu 1 309 -1 2373 94 0 0 chrX 139876171 139876479 -37097661 + AluSg1 SINE Alu 1 308 -1 360 309 56 16 chrX 139876481 139876607 -37097533 - MIR3 SINE MIR -23 185 55 272 319 94 29 chrX 139876606 139876744 -37097396 + MIR3 SINE MIR 6 152 -56 * 283 313 62 0 chrX 139876745 139876889 -37097251 - MLT1K LTR MaLR -4 584 432 2592 34 0 3 chrX 139877159 139877457 -37096683 + AluY SINE Alu 1 297 -14 2261 115 3 0 chrX 139877867 139878171 -37095969 - AluSg SINE Alu -5 305 1 207 0 0 0 chrX 139878330 139878353 -37095787 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2230 104 0 0 chrX 139878355 139878644 -37095496 - AluSx SINE Alu -23 289 1 1284 134 0 11 chrX 139878870 139879057 -37095083 - AluSg/x SINE Alu -11 299 115 21 0 0 0 chrX 139879099 139879120 -37095020 + AT_rich Low_complexity Low_complexity 1 21 0 295 287 21 46 chrX 139879330 139879484 -37094656 - MIR SINE MIR -63 145 50 300 306 14 0 chrX 139879672 139879744 -37094396 + L2 LINE L2 3224 3296 -17 25 31 0 0 chrX 139879744 139879776 -37094364 + AT_rich Low_complexity Low_complexity 1 32 0 334 256 64 103 chrX 139879928 139880131 -37094009 + MIR SINE MIR 68 262 0 2413 70 0 13 chrX 139880399 139880701 -37093439 - AluSq SINE Alu -15 298 1 2159 123 7 0 chrX 139882021 139882321 -37091819 + AluSp SINE Alu 1 302 -11 716 331 8 8 chrX 139883035 139883283 -37090857 + MIR SINE MIR 2 249 -13 267 133 0 0 chrX 139883621 139883666 -37090474 + (TA)n Simple_repeat Simple_repeat 2 46 0 617 336 39 0 chrX 139883869 139884077 -37090063 - MIR SINE MIR -29 233 18 2119 123 0 17 chrX 139884251 139884553 -37089587 - AluSx SINE Alu -15 297 1 1883 221 54 35 chrX 139884555 139885288 -37088852 + L1MC3 LINE L1 5079 5401 -745 2429 64 3 13 chrX 139885410 139885722 -37088418 + AluY SINE Alu 3 311 0 216 0 0 0 chrX 139886070 139886094 -37088046 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3567 189 14 35 chrX 139886094 139886141 -37087999 + L1MC3 LINE L1 5818 5864 -1921 986 57 0 0 chrX 139886141 139886264 -37087876 + L1PA11 LINE L1 6049 6171 -3 3567 189 14 35 chrX 139886264 139887021 -37087119 + L1MC3 LINE L1 5864 6605 -1180 486 49 49 0 chrX 139887021 139887102 -37087038 + (TAGA)n Simple_repeat Simple_repeat 3 87 0 3567 189 14 35 chrX 139887102 139887163 -37086977 + L1MC3 LINE L1 6605 6666 -1119 260 239 28 0 chrX 139887300 139887371 -37086769 + L1ME LINE L1 5533 5605 -516 2468 68 16 10 chrX 139887731 139888041 -37086099 + AluSp SINE Alu 2 313 0 1323 269 45 42 chrX 139888303 139888809 -37085331 - REP3 LTR ERV -33 529 22 338 146 0 0 chrX 139888824 139888879 -37085261 - MER94 DNA DNA -78 56 2 559 309 65 47 chrX 139889126 139889511 -37084629 + L1MC/D LINE L1 4742 5133 -1013 202 205 0 0 chrX 139889552 139889591 -37084549 - MIR SINE MIR -127 135 97 902 190 53 4 chrX 139890278 139890504 -37083636 + L1MA4 LINE L1 6029 6265 -35 242 359 0 0 chrX 139890577 139890641 -37083499 - MIR3 SINE MIR -25 183 120 281 232 205 9 chrX 139890797 139890909 -37083231 - MIR SINE MIR -1 261 128 281 278 14 0 chrX 139890914 139890986 -37083154 - REP3 LTR ERV -489 73 1 489 246 17 8 chrX 139891166 139891284 -37082856 - MIR SINE MIR -131 131 13 394 284 84 24 chrX 139891324 139891574 -37082566 + L1MC/D LINE L1 5460 5724 -2084 1160 239 59 19 chrX 139891608 139891983 -37082157 - LTR10C LTR ERV1 -43 590 188 2271 95 20 7 chrX 139892278 139892584 -37081556 + AluSg SINE Alu 1 310 0 280 333 11 0 chrX 139892595 139892685 -37081455 - MLT1L LTR MaLR -198 417 327 1623 127 0 0 chrX 139893269 139893490 -37080650 + AluSq SINE Alu 1 221 -92 4892 192 23 22 chrX 139893494 139894520 -37079620 - L1PA13 LINE L1 -3987 2810 1786 1980 155 0 19 chrX 139894520 139894829 -37079311 + AluJb SINE Alu 1 303 -9 2443 55 16 16 chrX 139894829 139895138 -37079002 + AluY SINE Alu 1 309 -2 4892 192 23 22 chrX 139895138 139895283 -37078857 - L1PA13 LINE L1 -5011 1786 1643 207 0 0 0 chrX 139895283 139895306 -37078834 + (TTG)n Simple_repeat Simple_repeat 2 24 0 4892 192 23 22 chrX 139895306 139895635 -37078505 - L1PA13 LINE L1 -5154 1643 1285 355 287 0 100 chrX 139895810 139896071 -37078069 + L2 LINE L2 1634 1868 -1446 376 358 40 15 chrX 139896072 139896368 -37077772 + L2 LINE L2 1124 1482 -1832 991 294 23 26 chrX 139896369 139896719 -37077421 + L2 LINE L2 1788 2136 -1178 216 233 83 17 chrX 139896726 139896786 -37077354 + L2 LINE L2 3006 3069 -244 197 333 0 0 chrX 139897019 139897073 -37077067 - MER5A DNA MER1_type -129 60 7 199 224 82 0 chrX 139897119 139897168 -37076972 - L2 LINE L2 -6 3307 3255 1317 313 57 10 chrX 139897928 139898646 -37075494 - L2 LINE L2 -4 3309 2551 5325 260 95 40 chrX 139898652 139898910 -37075230 - L2 LINE L2 -1164 2150 1908 2167 146 7 40 chrX 139898910 139899313 -37074827 - MLT1B LTR MaLR 0 390 1 5325 260 95 40 chrX 139899313 139900554 -37073586 - L2 LINE L2 -1406 1908 736 1876 203 7 100 chrX 139900554 139901125 -37073015 - MLT2B1 LTR ERVL -2 518 1 5325 260 95 40 chrX 139901125 139901298 -37072842 - L2 LINE L2 -2578 736 574 2249 101 3 10 chrX 139901298 139901595 -37072545 + AluSq SINE Alu 1 295 -18 5325 260 95 40 chrX 139901595 139901817 -37072323 - L2 LINE L2 -2740 574 150 1758 174 130 47 chrX 139902090 139902501 -37071639 + LTR10A LTR ERV1 1 463 -146 2385 96 7 0 chrX 139902501 139902804 -37071336 - AluY SINE Alu -6 305 1 1758 174 130 47 chrX 139902804 139902898 -37071242 + LTR10A LTR ERV1 463 548 -61 1896 162 55 37 chrX 139903207 139903750 -37070390 + MLT2A2 LTR ERVL 1 554 0 752 215 10 36 chrX 139903764 139903959 -37070181 + MLT1D LTR MaLR 1 190 -315 2696 53 12 0 chrX 139903962 139904302 -37069838 + L1PA7 LINE L1 5811 6154 0 1948 152 3 10 chrX 139904497 139904799 -37069341 + AluJo SINE Alu 5 304 -8 578 257 44 11 chrX 139904969 139905152 -37068988 + MLT1D LTR MaLR 277 465 -2 533 292 101 10 chrX 139905257 139905466 -37068674 + MIR SINE MIR 31 258 -4 24 53 0 0 chrX 139906156 139906194 -37067946 + AT_rich Low_complexity Low_complexity 1 38 0 2380 89 0 0 chrX 139906242 139906545 -37067595 - AluSx SINE Alu -9 303 1 194 175 25 25 chrX 139906936 139906976 -37067164 - L2 LINE L2 -262 3051 3012 2134 98 11 0 chrX 139907778 139908054 -37066086 + AluSg SINE Alu 1 279 -31 542 357 24 36 chrX 139908290 139908705 -37065435 - L2 LINE L2 0 3313 2904 342 293 73 8 chrX 139908738 139908861 -37065279 + MIR SINE MIR 68 198 -64 2245 88 37 0 chrX 139909045 139909341 -37064799 - AluSq SINE Alu -6 307 1 507 297 85 38 chrX 139909392 139909732 -37064408 + L1MC4a LINE L1 3588 3943 -2203 1209 283 76 22 chrX 139910196 139911485 -37062655 + L1MC4a LINE L1 4552 5389 -757 * 6080 195 45 31 chrX 139911483 139914034 -37060106 + L1MB7 LINE L1 3616 6184 0 181 97 0 0 chrX 139914107 139914138 -37060002 - L3 LINE CR1 0 1577 1547 237 356 0 10 chrX 139914173 139914274 -37059866 - MIR3 SINE MIR -19 189 90 315 0 0 0 chrX 139915188 139915223 -37058917 + (CA)n Simple_repeat Simple_repeat 2 36 0 1687 96 0 9 chrX 139915823 139916041 -37058099 - AluSg/x SINE Alu -20 292 77 231 285 65 32 chrX 139916525 139916648 -37057492 + HAL1b LINE L1 336 462 -886 359 224 122 20 chrX 139917126 139917273 -37056867 + L1M4 LINE L1 5182 5343 -803 686 260 63 37 chrX 139917280 139917769 -37056371 + L1MC5 LINE L1 7411 7912 -49 2015 146 66 11 chrX 139918262 139918640 -37055500 + MSTA LTR MaLR 3 401 -27 2303 80 6 22 chrX 139918790 139919104 -37055036 + AluSg SINE Alu 1 309 -1 2231 118 0 0 chrX 139919484 139919789 -37054351 + AluSg SINE Alu 1 305 -5 267 57 75 0 chrX 139919795 139919848 -37054292 + A-rich Low_complexity Low_complexity 4 60 0 319 347 32 30 chrX 139970802 139971023 -37003117 + MIR SINE MIR 9 231 -31 227 306 59 12 chrX 139971114 139971199 -37002941 + L2 LINE L2 3179 3267 -5 2016 89 0 0 chrX 139971747 139972004 -37002136 + AluSx SINE Alu 39 295 -17 2099 101 7 11 chrX 139972492 139972778 -37001362 - AluSc SINE Alu -24 285 1 262 313 87 0 chrX 139972797 139972912 -37001228 - MIR SINE MIR -74 188 64 30 27 0 0 chrX 139973087 139973124 -37001016 + AT_rich Low_complexity Low_complexity 1 37 0 280 321 0 69 chrX 139973411 139973542 -37000598 - L2 LINE L2 -4 3309 3188 1864 142 26 49 chrX 139973547 139973601 -37000539 + MSTC LTR MaLR 1 55 -373 23 0 0 0 chrX 139973601 139973624 -37000516 + AT_rich Low_complexity Low_complexity 1 23 0 1864 142 26 49 chrX 139973624 139974015 -37000125 + MSTC LTR MaLR 55 417 -11 357 296 0 64 chrX 139974109 139974234 -36999906 + L2 LINE L2 3185 3301 -12 1249 275 54 11 chrX 139974236 139974911 -36999229 - L1M4 LINE L1 -3572 2810 2098 21565 50 4 1 chrX 139975289 139978823 -36995317 - L1PA4 LINE L1 0 6155 2607 12169 57 2 1 chrX 139978823 139980482 -36993658 + L1PA4 LINE L1 936 2597 -3549 6633 188 20 16 chrX 139980471 139982956 -36991184 + L1M1 LINE L1 2262 4755 -2810 * 4820 92 10 7 chrX 139983020 139983729 -36990411 - LTR19-int LTR ERV1 -52 5534 4824 * 17494 98 54 46 chrX 139983728 139986859 -36987281 - LTR19-int LTR ERV1 -967 4619 1462 1780 102 8 4 chrX 139986859 139987104 -36987036 + AluSq SINE Alu 1 246 -67 1329 118 69 8 chrX 139987104 139987349 -36986791 - LTR19A LTR ERV1 -226 260 1 233 128 26 0 chrX 139987498 139987537 -36986603 + MIR3 SINE MIR 159 198 -10 2098 121 3 0 chrX 139987574 139987864 -36986276 + AluY SINE Alu 1 291 -20 555 78 0 0 chrX 139987864 139987941 -36986199 + (TG)n Simple_repeat Simple_repeat 2 78 0 740 310 9 9 chrX 139988003 139988252 -36985888 - MIR SINE MIR 0 262 18 204 213 21 0 chrX 139988482 139988529 -36985611 - L2 LINE L2 -5 3308 3261 2088 136 3 0 chrX 139988666 139988975 -36985165 + AluSg SINE Alu 1 310 0 605 267 88 65 chrX 139989017 139989279 -36984861 - L2 LINE L2 -339 2975 2708 452 198 0 9 chrX 139989464 139989570 -36984570 + CT-rich Low_complexity Low_complexity 3 107 0 2232 99 3 16 chrX 139989797 139990109 -36984031 - AluSx SINE Alu -4 308 1 1289 204 37 3 chrX 139990819 139991147 -36982993 - L1MA8 LINE L1 -5 6286 5948 23 0 0 0 chrX 139991156 139991179 -36982961 + AT_rich Low_complexity Low_complexity 1 23 0 4035 132 14 2 chrX 139991179 139991817 -36982323 - L1PA15 LINE L1 -5 6160 5515 3187 220 35 34 chrX 139991818 139992680 -36981460 - L1M1 LINE L1 -6690 875 13 189 0 0 0 chrX 139994086 139994107 -36980033 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 2845 116 29 7 chrX 139994612 139995062 -36979078 + LTR46 LTR ERV1 1 460 0 4772 146 91 55 chrX 139995736 139997214 -36976926 + MER4-int LTR ERV1 1502 2926 -3672 2007 130 0 13 chrX 139997214 139997513 -36976627 + AluSx SINE Alu 3 297 -15 4772 146 91 55 chrX 139997513 139997891 -36976249 + MER4-int LTR ERV1 2926 3289 -3309 1716 113 140 4 chrX 139997891 139998156 -36975984 - AluSx SINE Alu -1 301 1 4772 146 91 55 chrX 139998156 139999208 -36974932 + MER4-int LTR ERV1 3289 5029 -1569 2282 95 3 3 chrX 139999208 139999502 -36974638 + AluSg1 SINE Alu 1 294 -15 2845 116 29 7 chrX 140000314 140000764 -36973376 - LTR46 LTR ERV1 0 460 1 189 0 0 0 chrX 140001269 140001290 -36972850 + (GGGAA)n Simple_repeat Simple_repeat 1 21 0 3187 220 35 34 chrX 140002696 140003558 -36970582 + L1M1 LINE L1 13 875 -6690 4061 128 14 2 chrX 140003559 140004197 -36969943 + L1PA15 LINE L1 5515 6160 -5 1288 198 35 15 chrX 140004214 140004557 -36969583 + L1MA8 LINE L1 5937 6286 -5 2177 93 10 16 chrX 140005267 140005577 -36968563 + AluSx SINE Alu 1 308 -4 473 189 0 9 chrX 140005804 140005910 -36968230 + GA-rich Low_complexity Low_complexity 3 107 0 576 271 88 65 chrX 140006095 140006357 -36967783 + L2 LINE L2 2708 2975 -339 2022 139 3 0 chrX 140006392 140006701 -36967439 - AluSg SINE Alu 0 310 1 204 213 21 0 chrX 140006838 140006885 -36967255 + L2 LINE L2 3261 3308 -5 741 310 9 9 chrX 140007115 140007364 -36966776 + MIR SINE MIR 18 262 0 369 131 0 0 chrX 140007428 140007489 -36966651 + (CA)n Simple_repeat Simple_repeat 2 62 0 2110 118 3 0 chrX 140007489 140007778 -36966362 - AluY SINE Alu -21 290 1 233 128 26 0 chrX 140007815 140007854 -36966286 - MIR3 SINE MIR -10 198 159 1340 118 69 8 chrX 140008003 140008248 -36965892 + LTR19A LTR ERV1 1 260 -226 1791 98 8 4 chrX 140008248 140008493 -36965647 - AluSq SINE Alu -67 246 1 17539 96 55 49 chrX 140008493 140011631 -36962509 + LTR19A-int LTR ERV1 1462 4619 -967 5304 93 1 7 chrX 140011630 140012397 -36961743 + LTR19A-int LTR ERV1 4824 5586 0 * 1074 142 84 0 chrX 140012397 140012587 -36961553 + LTR19A LTR ERV1 1 206 -280 5726 53 1 30 chrX 140012629 140013421 -36960719 - L1PA5 LINE L1 -8 6146 5378 565 175 110 7 chrX 140013631 140013785 -36960355 - LTR36 LTR ERV1 -441 170 1 955 364 55 43 chrX 140014649 140015571 -36958569 - L2 LINE L2 -9 3263 2346 2262 79 7 0 chrX 140015779 140016070 -36958070 - AluSp SINE Alu -20 293 1 245 176 29 0 chrX 140016131 140016199 -36957941 + CT-rich Low_complexity Low_complexity 4 73 0 295 333 45 28 chrX 140016212 140016389 -36957751 - L2 LINE L2 -14 3299 3120 462 311 64 48 chrX 140019355 140019606 -36954534 - MIR SINE MIR -6 256 2 414 282 41 12 chrX 140020055 140020225 -36953915 + MER117 DNA MER1_type 1 175 -22 1626 106 4 42 chrX 140020278 140020543 -36953597 - MER50 LTR ERV1 -479 255 1 1709 261 26 22 chrX 140020545 140021044 -36953096 - MLT1D LTR MaLR 0 505 5 409 154 352 0 chrX 140022578 140022669 -36951471 - FLAM_C SINE Alu -20 123 1 1269 211 24 33 chrX 140022683 140023109 -36951031 + L1MC5 LINE L1 7505 7926 -35 854 195 76 13 chrX 140023282 140023518 -36950622 - L1ME1 LINE L1 -14 6152 5902 2409 85 20 0 chrX 140023666 140023972 -36950168 - AluSx SINE Alu 0 312 1 339 91 73 0 chrX 140024312 140024367 -36949773 + MER63 DNA MER1_type 1 685 -151 836 164 73 59 chrX 140024369 140024589 -36949551 + MLT1C LTR MaLR 2 224 -243 24 0 0 0 chrX 140025163 140025187 -36948953 + AT_rich Low_complexity Low_complexity 1 24 0 854 298 4 4 chrX 140025942 140026167 -36947973 + MIR SINE MIR 32 256 -6 2420 80 0 0 chrX 140026952 140027252 -36946888 + AluSg SINE Alu 1 300 -10 1445 137 4 0 chrX 140027427 140027668 -36946472 + L1MA3 LINE L1 6064 6305 0 1104 72 0 14 chrX 140027764 140027903 -36946237 + AluSg SINE Alu 1 137 -173 2097 93 7 7 chrX 140027904 140028184 -36945956 + AluSg SINE Alu 21 300 -10 21 36 0 0 chrX 140028277 140028305 -36945835 + AT_rich Low_complexity Low_complexity 1 28 0 381 283 47 0 chrX 140028380 140028486 -36945654 - MIR SINE MIR -33 229 119 4071 197 14 8 chrX 140028798 140029787 -36944353 - L1MB8 LINE L1 -9 6169 5176 477 312 230 8 chrX 140030972 140031341 -36942799 + L2 LINE L2 86 536 -2778 821 311 118 66 chrX 140031364 140031860 -36942280 + L2 LINE L2 1201 1757 -1557 2085 112 7 0 chrX 140031860 140032177 -36941963 + AluSg SINE Alu 1 319 0 821 311 118 66 chrX 140032177 140032483 -36941657 + L2 LINE L2 1757 2046 -1268 1844 184 25 28 chrX 140032485 140032690 -36941450 - L1M3 LINE L1 -512 5668 5464 2322 89 0 10 chrX 140032690 140032994 -36941146 + AluSx SINE Alu 1 301 -11 1844 184 25 28 chrX 140032994 140033375 -36940765 - L1M3 LINE L1 -716 5464 5075 303 307 11 11 chrX 140033439 140033527 -36940613 - L2 LINE L2 0 3272 3185 521 260 92 15 chrX 140033528 140033724 -36940416 + MLT1J2 LTR MaLR 1 211 -239 1042 196 45 112 chrX 140033811 140034168 -36939972 + MLT1A1 LTR MaLR 2 334 -31 1530 189 57 26 chrX 140034566 140034952 -36939188 + LTR52 LTR ERVL 1 398 -23 2878 212 33 11 chrX 140034963 140035627 -36938513 + LTR52-int LTR ERVL 10 688 -2868 513 174 66 41 chrX 140035629 140035750 -36938390 + LTR52-int LTR ERVL 846 969 -2587 405 0 0 0 chrX 140035750 140035795 -36938345 + (CA)n Simple_repeat Simple_repeat 1 45 0 438 192 39 19 chrX 140037502 140037606 -36936534 + LTR52 LTR ERVL 1 106 -315 5055 272 56 30 chrX 140037641 140039474 -36934666 + LTR52-int LTR ERVL 1284 3180 -376 8661 55 3 0 chrX 140039474 140040542 -36933598 + MER11C LTR ERVK 1 1071 0 5055 272 56 30 chrX 140040542 140040929 -36933211 + LTR52-int LTR ERVL 3180 3555 -1 547 238 0 8 chrX 140040965 140041087 -36933053 + LTR52 LTR ERVL 299 419 -2 198 143 0 0 chrX 140041104 140041139 -36933001 + (TA)n Simple_repeat Simple_repeat 2 36 0 570 357 106 17 chrX 140041209 140041832 -36932308 - L2 LINE L2 -12 3260 2569 629 327 47 24 chrX 140041846 140042100 -36932040 + MIR SINE MIR 3 262 0 2379 127 22 5 chrX 140042297 140042666 -36931474 - THE1C LTR MaLR 0 375 1 1463 104 15 40 chrX 140043034 140043288 -36930852 + THE1B LTR MaLR 116 364 0 10134 120 32 8 chrX 140043288 140044830 -36929310 + THE1B-int LTR MaLR 1 1580 0 2215 133 31 0 chrX 140044830 140045183 -36928957 + THE1B LTR MaLR 1 364 0 1941 133 3 3 chrX 140045231 140045516 -36928624 + AluSg SINE Alu 1 285 -25 304 374 39 57 chrX 140045671 140045952 -36928188 + L2 LINE L2 2996 3271 -1 696 280 78 42 chrX 140046028 140046337 -36927803 + MSTD LTR MaLR 1 328 -68 1979 123 9 25 chrX 140046337 140046653 -36927487 - AluY SINE Alu 0 311 1 696 280 78 42 chrX 140046653 140046725 -36927415 + MSTD LTR MaLR 328 396 0 28 29 0 0 chrX 140046736 140046771 -36927369 + AT_rich Low_complexity Low_complexity 1 35 0 2195 128 0 0 chrX 140046778 140047075 -36927065 + AluSg SINE Alu 5 301 -9 258 287 11 0 chrX 140047163 140047250 -36926890 + (TA)n Simple_repeat Simple_repeat 2 89 0 1535 220 30 33 chrX 140047603 140047912 -36926228 - MLT1A2 LTR MaLR -4 370 62 1561 190 60 30 chrX 140047912 140048276 -36925864 - THE1C LTR MaLR 0 375 1 9877 131 30 7 chrX 140048276 140049820 -36924320 - THE1C-int LTR MaLR 0 1580 1 1635 188 52 33 chrX 140049820 140050188 -36923952 - THE1C LTR MaLR 0 375 1 1535 220 30 33 chrX 140050188 140050244 -36923896 - MLT1A2 LTR MaLR -309 65 4 1266 210 68 0 chrX 140050263 140050515 -36923625 + Tigger3b DNA MER2_type 2 270 -961 654 121 0 10 chrX 140050521 140050620 -36923520 + MER4A LTR ERV1 1 98 -566 1899 123 14 25 chrX 140050620 140050969 -36923171 + MER4A LTR ERV1 261 664 0 * 5093 145 59 7 chrX 140050969 140051878 -36922262 + Tigger3b DNA MER2_type 275 1231 0 486 287 27 58 chrX 140052132 140052320 -36921820 - MIR SINE MIR -33 229 48 574 279 115 29 chrX 140052366 140052574 -36921566 - MIR SINE MIR -23 239 14 2451 77 3 3 chrX 140052806 140053118 -36921022 - AluSp SINE Alu 0 313 2 335 318 46 26 chrX 140054198 140054349 -36919791 + MIR SINE MIR 102 255 -7 1053 319 128 50 chrX 140054397 140055212 -36918928 + L3 LINE CR1 400 1277 -300 299 293 201 24 chrX 140055314 140055563 -36918577 - L2 LINE L2 -174 3139 2847 461 270 50 0 chrX 140055815 140056015 -36918125 - L1M4 LINE L1 -816 5330 5121 959 248 9 9 chrX 140057775 140057993 -36916147 + MER58A DNA MER1_type 5 222 -2 690 316 114 55 chrX 140058269 140058725 -36915415 + L2 LINE L2 2831 3313 0 528 235 85 13 chrX 140058802 140058955 -36915185 + MIR SINE MIR 81 244 -18 232 132 19 57 chrX 140059162 140059215 -36914925 - L2 LINE L2 -2 3311 3261 412 302 9 0 chrX 140059516 140059622 -36914518 + MER81 DNA DNA 8 114 0 272 373 91 0 chrX 140060547 140060657 -36913483 + L2 LINE L2 3152 3271 -1 219 268 0 0 chrX 140060854 140060910 -36913230 + (TAA)n Simple_repeat Simple_repeat 2 57 0 407 257 73 9 chrX 140060930 140061039 -36913101 - L2 LINE L2 -4 3268 3153 283 333 41 20 chrX 140061034 140061181 -36912959 + L2 LINE L2 2249 2398 -916 * 329 331 25 16 chrX 140061174 140061295 -36912845 + L2 LINE L2 3180 3301 -12 353 316 122 0 chrX 140061712 140061851 -36912289 - MIR SINE MIR -33 229 74 286 327 143 76 chrX 140062857 140063172 -36910968 + L2 LINE L2 2853 3188 -84 21 71 0 0 chrX 140063431 140063473 -36910667 + AT_rich Low_complexity Low_complexity 1 42 0 310 243 14 0 chrX 140063609 140063679 -36910461 - MIR SINE MIR -113 149 79 198 329 89 0 chrX 140063716 140063795 -36910345 - L3 LINE CR1 -10 1567 1482 1755 152 3 0 chrX 140064828 140065125 -36909015 + L1MB1 LINE L1 5865 6162 -6 40 21 0 0 chrX 140065818 140065865 -36908275 + AT_rich Low_complexity Low_complexity 1 47 0 4626 178 28 69 chrX 140066899 140068927 -36905213 + L1PA16 LINE L1 3990 5917 -249 525 212 0 9 chrX 140068939 140069052 -36905088 + L1P LINE L1 4850 4961 -1185 293 137 0 0 chrX 140069049 140069100 -36905040 - L1PA16 LINE L1 -169 5997 5947 * 1120 168 0 0 chrX 140069122 140069301 -36904839 + L1PA16 LINE L1 5935 6113 -53 37 52 0 0 chrX 140069355 140069413 -36904727 + AT_rich Low_complexity Low_complexity 1 58 0 543 315 104 56 chrX 140069998 140070301 -36903839 - L2 LINE L2 -35 3237 2950 2173 102 3 0 chrX 140070301 140070594 -36903546 + AluSc SINE Alu 1 294 -15 543 315 104 56 chrX 140070594 140070981 -36903159 - L2 LINE L2 -322 2950 2523 186 350 48 10 chrX 140071347 140071450 -36902690 - L3b LINE CR1 -353 1230 1124 30 69 0 0 chrX 140072364 140072422 -36901718 + AT_rich Low_complexity Low_complexity 1 58 0 1716 119 4 0 chrX 140072422 140072666 -36901474 - AluSx SINE Alu -27 285 41 3419 278 57 33 chrX 140072755 140074304 -36899836 - L2 LINE L2 -3 3310 1720 1274 337 79 31 chrX 140074313 140075045 -36899095 - L2 LINE L2 -2325 989 223 5424 132 6 27 chrX 140075157 140076384 -36897756 - L1PA16 LINE L1 -10 6156 4926 922 258 19 0 chrX 140076497 140076710 -36897430 + MER58A DNA MER1_type 2 218 -6 292 314 0 39 chrX 140076767 140076869 -36897271 - MER5B DNA MER1_type -67 111 14 690 128 0 0 chrX 140077189 140077291 -36896849 + AluSg/x SINE Alu 211 312 0 524 235 273 10 chrX 140077293 140077582 -36896558 + HAL1 LINE L1 1299 1663 -844 320 234 71 64 chrX 140078539 140078680 -36895460 - MIR SINE MIR -46 216 75 569 306 81 14 chrX 140079761 140079970 -36894170 + MIR SINE MIR 36 258 -4 218 273 0 0 chrX 140080056 140080100 -36894040 + L2 LINE L2 3210 3253 -19 538 344 16 32 chrX 140080607 140080915 -36893225 - L3 LINE CR1 -62 1515 1213 1745 206 11 22 chrX 140081102 140081471 -36892669 - MLT1A1 LTR MaLR 0 365 1 201 74 0 0 chrX 140081504 140081531 -36892609 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 3152 168 66 9 chrX 140082160 140082736 -36891404 - MER90 LTR ERV1 -5 609 1 515 287 72 96 chrX 140082737 140083072 -36891068 - L2 LINE L2 -40 3273 2947 203 301 55 75 chrX 140084129 140084275 -36889865 - MIR SINE MIR -25 237 95 440 272 98 27 chrX 140084374 140084558 -36889582 + MIR SINE MIR 66 262 0 291 333 25 8 chrX 140084589 140084709 -36889431 + MIR SINE MIR 124 245 -17 232 305 21 42 chrX 140085059 140085154 -36888986 - MLT1K LTR MaLR -346 242 150 2356 84 3 0 chrX 140087222 140087520 -36886620 + AluSx SINE Alu 10 308 -4 326 258 97 116 chrX 140087768 140088078 -36886062 - MLT1J2 LTR MaLR 0 450 106 1494 196 7 10 chrX 140088279 140088401 -36885739 + AluJb SINE Alu 1 122 -190 402 21 0 0 chrX 140088401 140088448 -36885692 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1494 196 7 10 chrX 140088448 140088616 -36885524 + AluJb SINE Alu 122 290 -22 2326 84 7 0 chrX 140088653 140088952 -36885188 + AluSp SINE Alu 1 301 -12 21238 54 2 4 chrX 140089043 140092586 -36881554 - L1PA5 LINE L1 -9 6145 2607 12009 62 3 0 chrX 140092586 140094243 -36879897 + L1PA5 LINE L1 936 2597 -3549 6833 186 14 15 chrX 140094232 140096728 -36877412 + L1M1 LINE L1 2262 4755 -2810 * 4796 92 10 7 chrX 140096792 140097501 -36876639 - LTR19-int LTR ERV1 -52 5534 4824 * 17259 101 53 49 chrX 140097500 140100645 -36873495 - LTR19-int LTR ERV1 -967 4619 1462 1750 106 8 4 chrX 140100645 140100890 -36873250 + AluSq SINE Alu 1 246 -67 1302 127 70 8 chrX 140100890 140101134 -36873006 - LTR19A LTR ERV1 -226 260 2 233 128 26 0 chrX 140101284 140101323 -36872817 + MIR3 SINE MIR 159 198 -10 1953 129 11 0 chrX 140101360 140101647 -36872493 + AluY SINE Alu 1 290 -21 411 98 0 0 chrX 140101649 140101710 -36872430 + (TG)n Simple_repeat Simple_repeat 2 62 0 721 313 9 9 chrX 140101768 140102017 -36872123 - MIR SINE MIR 0 262 18 244 184 20 0 chrX 140102243 140102292 -36871848 - L2 LINE L2 -3 3310 3261 2083 134 3 0 chrX 140102429 140102775 -36871365 + AluSg SINE Alu 1 347 0 605 276 75 64 chrX 140102799 140103064 -36871076 - L2 LINE L2 -339 2975 2708 344 188 0 12 chrX 140103254 140103334 -36870806 + CT-rich Low_complexity Low_complexity 3 81 0 2197 106 3 13 chrX 140103561 140103872 -36870268 - AluSx SINE Alu -4 308 1 1238 207 35 15 chrX 140104582 140104925 -36869215 - L1MA8 LINE L1 -5 6286 5937 3975 135 14 2 chrX 140104942 140105580 -36868560 - L1PA15 LINE L1 -5 6160 5515 3199 217 37 37 chrX 140105581 140106444 -36867696 - L1M1 LINE L1 -6690 875 13 2845 116 29 7 chrX 140108374 140108824 -36865316 + LTR46 LTR ERV1 1 460 0 2255 102 3 3 chrX 140109637 140109931 -36864209 - AluSg1 SINE Alu -15 294 1 5311 138 64 30 chrX 140109931 140111086 -36863054 - MER4-int LTR ERV1 -1569 5029 3836 281 136 68 0 chrX 140111084 140111143 -36862997 - MER4-int LTR ERV1 -2917 3681 3619 * 1169 84 0 0 chrX 140111152 140111295 -36862845 + AluSq SINE Alu 12 154 -159 783 112 0 9 chrX 140111295 140111411 -36862729 + AluSg/x SINE Alu 190 304 -6 277 315 179 73 chrX 140112337 140112639 -36861501 - L2 LINE L2 -2 3270 2937 21 57 0 0 chrX 140112879 140112914 -36861226 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chrX 140113148 140113174 -36860966 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 19159 49 3 5 chrX 140113189 140116418 -36857722 - L1PA5 LINE L1 -5 6149 2926 322 335 119 10 chrX 140116651 140116961 -36857179 - L1M4 LINE L1 -1279 4867 4524 408 289 127 41 chrX 140117159 140117356 -36856784 + MIR SINE MIR 35 248 -14 2325 117 10 39 chrX 140117583 140117768 -36856372 - THE1C LTR MaLR 0 375 186 2088 138 48 22 chrX 140117768 140118123 -36856017 - THE1B LTR MaLR 0 364 1 11751 93 8 0 chrX 140118127 140119691 -36854449 - THE1B-int LTR MaLR -4 1576 1 2009 138 53 28 chrX 140119691 140120046 -36854094 - THE1B LTR MaLR 0 364 1 2325 117 10 39 chrX 140120046 140120240 -36853900 - THE1C LTR MaLR -190 185 1 326 277 12 0 chrX 140120319 140120402 -36853738 + AluJ/FLAM SINE Alu 1 84 -218 250 191 0 0 chrX 140120451 140120498 -36853642 - L1MC5 LINE L1 -598 7363 7317 308 262 9 19 chrX 140120541 140120648 -36853492 - LTR16B LTR ERVL 0 464 359 24 0 0 0 chrX 140120678 140120702 -36853438 + AT_rich Low_complexity Low_complexity 1 24 0 255 385 42 42 chrX 140120711 140120976 -36853164 + L2 LINE L2 2819 3083 -189 510 235 134 28 chrX 140121268 140121447 -36852693 + MIR SINE MIR 1 198 -64 2324 89 0 3 chrX 140121578 140121869 -36852271 + AluSg SINE Alu 1 290 -20 1300 312 41 43 chrX 140121916 140122746 -36851394 - L2 LINE L2 -19 3294 2458 528 275 78 53 chrX 140122747 140122991 -36851149 - MIR SINE MIR 0 262 13 827 194 46 42 chrX 140123706 140123922 -36850218 + MER20 DNA MER1_type 3 219 0 290 87 22 0 chrX 140124861 140124907 -36849233 + (CA)n Simple_repeat Simple_repeat 2 48 0 1532 288 53 31 chrX 140125405 140126044 -36848096 + L1M2c LINE L1 3 655 -6134 339 274 97 68 chrX 140126485 140126733 -36847407 + MIR SINE MIR 2 256 -6 3721 48 0 0 chrX 140126877 140127332 -36846808 - L1PA5 LINE L1 0 6154 5700 1029 182 157 56 chrX 140127506 140127830 -36846310 - MLT1A1 LTR MaLR -8 357 1 450 244 20 117 chrX 140127879 140127982 -36846158 + L1ME3A LINE L1 5896 6007 -163 264 59 0 0 chrX 140127982 140128016 -36846124 + (TG)n Simple_repeat Simple_repeat 1 34 0 450 244 20 117 chrX 140128016 140128211 -36845929 + L1ME3A LINE L1 6007 6165 -5 804 302 102 12 chrX 140128272 140128557 -36845583 - L1ME4a LINE L1 -65 6056 5798 2306 110 0 0 chrX 140128557 140128866 -36845274 - AluSx SINE Alu -3 309 1 804 302 102 12 chrX 140128866 140129097 -36845043 - L1ME4a LINE L1 -323 5798 5493 2389 195 27 37 chrX 140129727 140130104 -36844036 - MER63C DNA MER1_type -421 639 269 2225 106 0 25 chrX 140130104 140130424 -36843716 + AluSx SINE Alu 1 312 0 2389 195 27 37 chrX 140130424 140130637 -36843503 - MER63C DNA MER1_type -791 269 55 3209 267 35 67 chrX 140130742 140131079 -36843061 - L2 LINE L2 -532 2782 2436 2169 120 0 3 chrX 140131079 140131371 -36842769 + AluSg SINE Alu 1 291 -19 3209 267 35 67 chrX 140131371 140132214 -36841926 - L2 LINE L2 -878 2436 1640 930 219 14 10 chrX 140132220 140132575 -36841565 - MSTD LTR MaLR -2 394 1 725 297 149 16 chrX 140132575 140132898 -36841242 - L2 LINE L2 -1673 1641 1276 1900 138 55 22 chrX 140132898 140133261 -36840879 + THE1C LTR MaLR 1 375 0 282 314 29 10 chrX 140133380 140133482 -36840658 - MIR SINE MIR -39 223 120 1011 152 0 0 chrX 140133493 140133710 -36840430 + (TA)n Simple_repeat Simple_repeat 1 217 0 207 321 0 0 chrX 140133780 140133836 -36840304 - L2 LINE L2 -503 2811 2756 1767 225 49 34 chrX 140133894 140134388 -36839752 + MLT1D LTR MaLR 3 503 -2 195 232 37 85 chrX 140135145 140135227 -36838913 + MIR SINE MIR 64 141 -67 431 286 122 20 chrX 140135468 140135615 -36838525 + MIR3 SINE MIR 35 196 -12 905 278 5 0 chrX 140135616 140135839 -36838301 - MER58A DNA MER1_type 0 224 1 557 261 0 101 chrX 140137382 140137620 -36836520 + MER20 DNA MER1_type 1 214 -5 1969 81 106 3 chrX 140138324 140138608 -36835532 - AluSp SINE Alu 0 313 1 237 347 46 0 chrX 140138925 140139098 -36835042 - L1ME LINE L1 -406 5715 5535 23 33 0 0 chrX 140139614 140139644 -36834496 + AT_rich Low_complexity Low_complexity 1 30 0 427 322 64 25 chrX 140139732 140139934 -36834206 + MIR SINE MIR 47 256 -6 24 0 0 0 chrX 140140341 140140365 -36833775 + AT_rich Low_complexity Low_complexity 1 24 0 2025 82 71 0 chrX 140140444 140140724 -36833416 - AluY SINE Alu -11 300 1 336 270 50 95 chrX 140141065 140141287 -36832853 - L1 LINE L1 -1632 4514 4303 2180 134 0 0 chrX 140141327 140141632 -36832508 - AluSx SINE Alu -5 307 3 244 186 0 34 chrX 140141687 140141746 -36832394 - L1MA9 LINE L1 -39 6273 6217 27 49 0 0 chrX 140141803 140141844 -36832296 + AT_rich Low_complexity Low_complexity 1 41 0 267 290 23 65 chrX 140141899 140142113 -36832027 - L1 LINE L1 -2200 3946 3742 336 83 0 0 chrX 140142315 140142363 -36831777 + (GA)n Simple_repeat Simple_repeat 2 49 0 1087 173 52 0 chrX 140142440 140142631 -36831509 + THE1B LTR MaLR 1 201 -163 523 245 7 7 chrX 140142654 140142797 -36831343 + L1MB7 LINE L1 6033 6175 -9 366 349 47 5 chrX 140142903 140143118 -36831022 - L2 LINE L2 -859 2455 2232 198 329 215 29 chrX 140143379 140143723 -36830417 - L2 LINE L2 -1351 1963 1556 198 0 0 0 chrX 140143938 140143960 -36830180 + (TG)n Simple_repeat Simple_repeat 2 23 0 1958 137 0 32 chrX 140144908 140145222 -36828918 + AluSx SINE Alu 1 304 -8 432 277 34 14 chrX 140145240 140145388 -36828752 - MIR SINE MIR -36 226 76 245 338 13 38 chrX 140145449 140145606 -36828534 - MIR SINE MIR -63 199 47 186 350 20 0 chrX 140145730 140145830 -36828310 + MIR SINE MIR 146 247 -15 1370 224 33 41 chrX 140146316 140146688 -36827452 + MLT2B1 LTR ERVL 1 418 -102 201 167 56 0 chrX 140146728 140146782 -36827358 + (TA)n Simple_repeat Simple_repeat 1 57 0 227 204 0 0 chrX 140146799 140146848 -36827292 + MLT2B1 LTR ERVL 472 520 0 439 310 55 25 chrX 140146957 140147157 -36826983 - MIR SINE MIR -56 206 1 363 44 0 0 chrX 140147842 140147887 -36826253 + (TG)n Simple_repeat Simple_repeat 1 45 0 271 366 46 15 chrX 140148024 140148155 -36825985 + L2 LINE L2 3138 3272 0 232 245 0 0 chrX 140148164 140148213 -36825927 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 352 318 0 23 chrX 140148519 140148648 -36825492 - L2 LINE L2 0 3313 3188 496 318 94 46 chrX 140148667 140149211 -36824929 + HAL1 LINE L1 155 724 -1783 2275 112 0 0 chrX 140149259 140149563 -36824577 - AluSg SINE Alu -6 304 1 262 320 0 52 chrX 140149771 140149868 -36824272 - MER5B DNA MER1_type -80 98 7 186 314 85 25 chrX 140150998 140151116 -36823024 - L2 LINE L2 -213 3059 2935 503 80 0 0 chrX 140151544 140151619 -36822521 - L1PA5 LINE L1 -3 6151 6077 287 0 0 0 chrX 140151619 140151651 -36822489 + L1PA4 LINE L1 5850 5881 -274 287 295 39 0 chrX 140151960 140152038 -36822102 + MIR SINE MIR 86 166 -96 285 29 0 0 chrX 140152746 140152780 -36821360 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 284 0 14 chrX 140152837 140152911 -36821229 + L2 LINE L2 3237 3309 -4 187 286 63 16 chrX 140152912 140152975 -36821165 - MIR SINE MIR -116 146 81 198 0 0 0 chrX 140153001 140153023 -36821117 + (TG)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 140153038 140153061 -36821079 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 140153076 140153105 -36821035 + (TG)n Simple_repeat Simple_repeat 2 30 0 3668 150 22 2 chrX 140154639 140155280 -36818860 + L1P LINE L1 4697 5350 -796 201 167 0 0 chrX 140155310 140155346 -36818794 + T-rich Low_complexity Low_complexity 1 36 0 7466 31 19 0 chrX 140155347 140156310 -36817830 - L1PA3 LINE L1 -3 6152 5186 749 270 37 106 chrX 140157173 140157628 -36816512 - L2 LINE L2 -17 3296 2873 739 232 107 23 chrX 140157644 140158064 -36816076 - MLT1C LTR MaLR -10 457 1 2511 59 7 0 chrX 140158078 140158384 -36815756 + AluY SINE Alu 1 308 -3 246 246 55 64 chrX 140158388 140158498 -36815642 - L2 LINE L2 -455 2859 2751 204 97 0 0 chrX 140158628 140158659 -36815481 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1352 85 0 0 chrX 140158659 140158835 -36815305 - L1PA8 LINE L1 -24 6148 5973 394 385 50 8 chrX 140159128 140159367 -36814773 - L2 LINE L2 -497 2817 2569 665 296 77 5 chrX 140159900 140160096 -36814044 - MIR SINE MIR -7 255 46 16266 165 6 7 chrX 140161497 140165351 -36808789 + L1PA11 LINE L1 2327 6211 0 234 91 0 0 chrX 140165647 140165680 -36808460 + (TTA)n Simple_repeat Simple_repeat 1 33 0 2702 101 3 5 chrX 140166565 140166941 -36807199 - THE1C LTR MaLR 0 375 1 948 326 75 34 chrX 140167043 140167624 -36806516 + L2 LINE L2 2696 3292 -21 31 26 0 0 chrX 140167832 140167870 -36806270 + AT_rich Low_complexity Low_complexity 1 38 0 539 14 0 55 chrX 140169098 140169171 -36804969 - L1PA3 LINE L1 -223 5932 5864 1787 35 4 13 chrX 140169171 140169386 -36804754 + L1PA3 LINE L1 5928 6152 -3 25 0 0 0 chrX 140169386 140169411 -36804729 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chrX 140169940 140169975 -36804165 + (CA)n Simple_repeat Simple_repeat 1 35 0 2281 52 42 11 chrX 140169993 140170279 -36803861 - AluY SINE Alu -16 295 1 2089 118 4 0 chrX 140171048 140171355 -36802785 + AluSx SINE Alu 1 308 0 248 143 14 129 chrX 140171387 140171457 -36802683 - MER103 DNA DNA -33 133 72 7809 13 0 0 chrX 140171541 140173215 -36800925 - L1PA3 LINE L1 -2 6153 4476 188 327 0 0 chrX 140173738 140173793 -36800347 + L2 LINE L2 3216 3270 -2 2273 89 3 3 chrX 140174012 140174314 -36799826 - AluSp SINE Alu -11 302 1 2559 308 75 48 chrX 140175823 140176052 -36798088 + L1MEc LINE L1 11 232 -6164 2392 127 5 19 chrX 140176052 140176421 -36797719 - THE1B LTR MaLR 0 364 1 11636 104 2 0 chrX 140176421 140177997 -36796143 - THE1B-int LTR MaLR 0 1580 1 2266 140 8 27 chrX 140177997 140178368 -36795772 - THE1B LTR MaLR 0 364 1 2559 308 75 48 chrX 140178368 140180418 -36793722 + L1MEc LINE L1 231 2353 -4043 610 363 44 0 chrX 140180418 140180644 -36793496 + LTR16B LTR ERVL 1 236 -228 425 281 66 33 chrX 140180665 140181000 -36793140 + L1MDa LINE L1 2061 2406 -4134 25396 133 10 9 chrX 140181020 140181216 -36792924 + L1PA8A LINE L1 1066 1260 -4871 2215 96 7 20 chrX 140181216 140181519 -36792621 + AluSg SINE Alu 1 299 -11 25396 133 10 9 chrX 140181519 140183559 -36790581 + L1PA8A LINE L1 1260 3297 -2834 2815 13 0 0 chrX 140183559 140183867 -36790273 + AluYa5 SINE Alu 1 308 -3 25396 133 10 9 chrX 140183867 140186676 -36787464 + L1PA8A LINE L1 3297 6113 -18 1837 307 87 27 chrX 140188365 140188974 -36785166 - L2 LINE L2 -357 2957 2279 2207 122 14 8 chrX 140188974 140189327 -36784813 + THE1A LTR MaLR 1 355 0 1837 307 87 27 chrX 140189327 140189581 -36784559 - L2 LINE L2 -1035 2279 2042 642 264 14 110 chrX 140189596 140189960 -36784180 - L2 LINE L2 -1530 1784 1456 275 295 157 12 chrX 140190788 140190954 -36783186 - MIR3 SINE MIR -7 201 12 252 240 0 40 chrX 140191538 140191613 -36782527 - MIR SINE MIR -50 212 141 2044 291 65 68 chrX 140191973 140193344 -36780796 + L1MA7 LINE L1 1 1247 -5034 * 6996 192 27 9 chrX 140193340 140195053 -36779087 + L1MA7 LINE L1 1477 4844 -1506 1783 191 36 23 chrX 140195024 140195151 -36778989 + L1PB2 LINE L1 4054 4178 -2172 * 2101 108 3 13 chrX 140195151 140195456 -36778684 + AluSx SINE Alu 2 303 -9 1783 191 36 23 chrX 140195456 140195716 -36778424 + L1PB2 LINE L1 4178 4446 -1904 6094 155 7 14 chrX 140196182 140198108 -36776032 + L1PB2 LINE L1 4233 6147 -4 5328 173 32 12 chrX 140198112 140199759 -36774381 + L1MA7 LINE L1 4804 6489 -6 5295 180 27 7 chrX 140200018 140201909 -36772231 - L1PA16 LINE L1 -22 6144 4221 549 298 68 79 chrX 140202072 140202539 -36771601 + L2 LINE L2 2852 3313 0 260 369 36 18 chrX 140202553 140202664 -36771476 + L2 LINE L2 3136 3248 -24 242 370 62 26 chrX 140203932 140204124 -36770016 - MIR SINE MIR -44 218 20 239 344 80 16 chrX 140204514 140204639 -36769501 - MIR SINE MIR -109 153 21 24 32 0 0 chrX 140204754 140204785 -36769355 + AT_rich Low_complexity Low_complexity 1 31 0 5517 162 47 4 chrX 140205686 140206962 -36767178 - L1PA15 LINE L1 -9 6156 4810 1255 275 42 13 chrX 140206946 140207255 -36766885 - L1PA13 LINE L1 -5296 1491 1174 * 180 313 78 0 chrX 140207497 140207561 -36766579 + L2 LINE L2 2903 2971 -301 3042 256 44 31 chrX 140207602 140208060 -36766080 - L1MD2 LINE L1 -222 6137 5687 1827 218 67 45 chrX 140208060 140208551 -36765589 + MLT1D LTR MaLR 1 502 -3 3042 256 44 31 chrX 140208551 140209767 -36764373 - L1MD2 LINE L1 -672 5687 4436 804 228 53 0 chrX 140209768 140209974 -36764166 + L1M4 LINE L1 3653 3869 -2277 335 217 12 0 chrX 140209975 140210058 -36764082 + L1M2 LINE L1 5540 5623 -689 774 119 87 0 chrX 140210152 140210278 -36763862 - LTR7 LTR ERV1 -313 137 1 3546 109 11 32 chrX 140210278 140210847 -36763293 - HERVH LTR ERV1 0 7713 7157 616 180 33 0 chrX 140210840 140210962 -36763178 - HERVH LTR ERV1 -1697 6016 5891 * 432 244 38 7 chrX 140210962 140211111 -36763029 - L1M LINE L1 -810 5336 5201 1409 181 37 0 chrX 140211111 140211382 -36762758 - L1MD1 LINE L1 0 6242 5962 506 196 0 0 chrX 140212182 140212274 -36761866 - MLT1I LTR MaLR -2 407 316 12468 198 23 37 chrX 140213093 140216736 -36757404 - L1PA13 LINE L1 -1786 5011 1534 3361 78 14 0 chrX 140216736 140216777 -36757363 - MLT2A1 LTR ERVL -2 442 403 1116 133 0 0 chrX 140216777 140216957 -36757183 + (TA)n Simple_repeat Simple_repeat 1 180 0 3361 78 14 0 chrX 140216957 140217351 -36756789 - MLT2A1 LTR ERVL -41 403 1 12468 198 23 37 chrX 140217351 140218863 -36755277 - L1PA13 LINE L1 -5263 1534 2 304 333 67 19 chrX 140219091 140219196 -36754944 - L2 LINE L2 -5 3267 3158 995 213 24 110 chrX 140219283 140219682 -36754458 - MLT1A1 LTR MaLR 0 457 1 1401 188 18 115 chrX 140219682 140220065 -36754075 + MLT1A1 LTR MaLR 20 365 0 302 279 44 70 chrX 140220251 140220409 -36753731 - MIR SINE MIR -60 202 49 626 244 156 7 chrX 140220531 140220720 -36753420 - MIR SINE MIR -10 252 49 186 43 0 0 chrX 140221013 140221036 -36753104 + (TC)n Simple_repeat Simple_repeat 2 24 0 333 262 116 30 chrX 140221876 140222040 -36752100 - MIR3 SINE MIR -10 198 21 27 0 0 0 chrX 140223052 140223079 -36751061 + AT_rich Low_complexity Low_complexity 1 27 0 345 326 0 48 chrX 140223439 140223566 -36750574 + MIR SINE MIR 28 147 -74 338 299 10 0 chrX 140224287 140224384 -36749756 + GA-rich Low_complexity Low_complexity 2 99 0 839 262 94 45 chrX 140225024 140225286 -36748854 - MLT1J LTR MaLR 0 511 224 2111 101 24 3 chrX 140225286 140225584 -36748556 + AluSx SINE Alu 1 304 -8 839 262 94 45 chrX 140225584 140225695 -36748445 - MLT1J LTR MaLR -287 224 120 246 330 80 0 chrX 140225793 140225881 -36748259 - MLT1J LTR MaLR -416 95 1 312 309 29 50 chrX 140226084 140226223 -36747917 - MIR SINE MIR -74 134 26 626 271 37 5 chrX 140226762 140226950 -36747190 - MIR SINE MIR -4 258 65 391 298 84 0 chrX 140228582 140228713 -36745427 - MIR3 SINE MIR -37 171 30 21 36 0 0 chrX 140228897 140228925 -36745215 + AT_rich Low_complexity Low_complexity 1 28 0 2226 96 7 7 chrX 140229291 140229584 -36744556 - AluSp SINE Alu -20 293 1 932 304 13 19 chrX 140229972 140230285 -36743855 + L1MEc LINE L1 45 355 -6041 * 3019 244 125 44 chrX 140230280 140231952 -36742188 + L1MB5 LINE L1 382 2184 -4775 634 209 52 0 chrX 140232001 140232116 -36742024 + FLAM_C SINE Alu 1 121 -22 1094 171 120 21 chrX 140232116 140232350 -36741790 + MSTA LTR MaLR 172 428 0 3145 180 20 3 chrX 140232350 140232593 -36741547 + L1MB1 LINE L1 5541 5778 -390 300 53 0 0 chrX 140232593 140232631 -36741509 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 3145 180 20 3 chrX 140232631 140232981 -36741159 + L1MB1 LINE L1 5778 6144 -24 367 306 33 33 chrX 140233004 140233187 -36740953 + L1MB5 LINE L1 2781 2963 -4175 2087 130 0 3 chrX 140233189 140233482 -36740658 + AluSp SINE Alu 20 311 -2 284 272 0 11 chrX 140233510 140233602 -36740538 + L1MB5 LINE L1 2929 3019 -3938 * 4244 230 51 73 chrX 140233593 140234113 -36740027 + L1MB5 LINE L1 3959 4489 -2496 2005 138 3 7 chrX 140234113 140234435 -36739705 + AluSq SINE Alu 1 313 0 4244 230 51 73 chrX 140234435 140234983 -36739157 + L1MB5 LINE L1 4489 5048 -1937 812 217 0 22 chrX 140234983 140235163 -36738977 + FRAM SINE Alu 1 176 0 4244 230 51 73 chrX 140235163 140237012 -36737128 + L1MB5 LINE L1 5048 6977 -8 2392 93 0 0 chrX 140237735 140238045 -36736095 + AluSg SINE Alu 1 310 0 2741 236 66 49 chrX 140238324 140239117 -36735023 - MER21B LTR ERV1 -57 806 1 1845 142 7 26 chrX 140239294 140239596 -36734544 - AluJo SINE Alu -16 296 1 234 273 0 0 chrX 140240250 140240305 -36733835 + L2 LINE L2 3209 3263 -9 7561 198 60 116 chrX 140241044 140241159 -36732981 - Charlie1 DNA MER1_type -31 2730 2610 2449 29 0 4 chrX 140241159 140241438 -36732702 + AluY SINE Alu 23 300 -11 7561 198 60 116 chrX 140241438 140244214 -36729926 - Charlie1 DNA MER1_type -151 2610 1 393 292 0 10 chrX 140244304 140244413 -36729727 - MLT1J2 LTR MaLR -281 169 71 3761 132 34 0 chrX 140245942 140246554 -36727586 - LTR24C LTR ERV1 0 635 3 1739 154 3 24 chrX 140246655 140246948 -36727192 - AluJb SINE Alu -14 298 12 6156 136 13 8 chrX 140246976 140248535 -36725605 - L1PB1 LINE L1 -2 6149 4584 225 65 0 0 chrX 140248908 140248939 -36725201 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 276 30 0 0 chrX 140248938 140248971 -36725169 + (TA)n Simple_repeat Simple_repeat 2 34 0 294 327 44 16 chrX 140248939 140249210 -36724930 + L1M4 LINE L1 4338 4586 -1560 21 36 0 0 chrX 140249408 140249436 -36724704 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chrX 140249554 140249592 -36724548 + (CA)n Simple_repeat Simple_repeat 2 39 0 294 29 0 0 chrX 140249601 140249636 -36724504 + (TG)n Simple_repeat Simple_repeat 2 36 0 2301 95 0 3 chrX 140249722 140250017 -36724123 + AluSc SINE Alu 1 294 -15 1523 102 0 0 chrX 140250280 140250505 -36723635 - L1MA1 LINE L1 -1 6301 6077 2271 91 10 3 chrX 140251815 140252124 -36722016 + AluSq SINE Alu 1 311 -2 471 308 21 54 chrX 140252198 140252438 -36721702 + L1ME LINE L1 145 376 -5829 542 331 69 28 chrX 140252538 140252868 -36721272 + L1ME LINE L1 1860 2208 -4188 387 0 0 0 chrX 140252868 140252911 -36721229 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 542 331 69 28 chrX 140252911 140252942 -36721198 + L1ME LINE L1 2208 2236 -4160 2170 155 27 12 chrX 140252943 140253158 -36720982 - MLT1B LTR MaLR 0 390 164 2167 121 7 0 chrX 140253158 140253463 -36720677 - AluSx SINE Alu -5 307 1 2170 155 27 12 chrX 140253463 140253630 -36720510 - MLT1B LTR MaLR -226 164 1 1274 269 85 28 chrX 140253631 140254379 -36719761 + L1ME LINE L1 2706 3505 -2710 2355 84 13 0 chrX 140254379 140254677 -36719463 + AluSg SINE Alu 1 302 -8 1274 269 85 28 chrX 140254677 140254738 -36719402 + L1ME LINE L1 3505 3561 -2654 5064 133 24 20 chrX 140254928 140256053 -36718087 - L1PA15 LINE L1 -8 6157 5003 2583 158 7 0 chrX 140256053 140256484 -36717656 + MER57B LTR ERV1 1 434 0 5064 133 24 20 chrX 140256484 140257177 -36716963 - L1PA15 LINE L1 -1162 5003 4315 697 46 11 0 chrX 140257179 140257266 -36716874 + L1PA5 LINE L1 11 98 -6048 * 36263 61 1 9 chrX 140257264 140262841 -36711299 + L1PA5 LINE L1 623 6153 -1 4636 166 11 13 chrX 140262831 140263317 -36710823 + L1PB4 LINE L1 5297 5782 -374 * 2080 68 15 0 chrX 140263317 140263582 -36710558 + AluY SINE Alu 34 302 -9 4636 166 11 13 chrX 140263582 140263956 -36710184 + L1PB4 LINE L1 5782 6155 -1 791 181 6 51 chrX 140263984 140264161 -36709979 + L1MB5 LINE L1 5993 6161 -13 430 325 43 27 chrX 140264198 140264386 -36709754 + MIR SINE MIR 49 239 -23 283 301 24 57 chrX 140264941 140265064 -36709076 - L2 LINE L2 -15 3298 3180 695 254 32 9 chrX 140265309 140265583 -36708557 + L1ME LINE L1 820 1137 -5074 229 328 59 27 chrX 140265674 140265860 -36708280 - MARNA DNA Mariner -356 230 39 308 250 147 45 chrX 140265941 140266097 -36708043 - MIR SINE MIR -54 208 37 223 232 18 18 chrX 140267592 140267648 -36706492 - L2 LINE L2 -16 3256 3201 414 259 54 0 chrX 140267648 140267760 -36706380 + MLT1J LTR MaLR 6 123 -388 25 31 0 0 chrX 140268030 140268062 -36706078 + AT_rich Low_complexity Low_complexity 1 32 0 2210 123 0 0 chrX 140268734 140269042 -36705098 + AluSg SINE Alu 3 310 0 573 286 0 7 chrX 140269888 140270035 -36704105 + MLT1H LTR MaLR 115 260 -289 348 370 8 8 chrX 140270319 140270446 -36703694 - MIR3 SINE MIR -77 131 5 433 312 138 23 chrX 140270652 140270870 -36703270 + MIR SINE MIR 14 256 -6 198 103 0 0 chrX 140270937 140270966 -36703174 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1673 166 145 16 chrX 140271091 140271470 -36702670 - MSTA LTR MaLR 0 428 1 198 103 0 0 chrX 140271897 140271926 -36702214 + (TAA)n Simple_repeat Simple_repeat 3 31 0 528 290 0 0 chrX 140271928 140272059 -36702081 - MIR SINE MIR -8 254 124 10606 197 64 50 chrX 140272063 140272171 -36701969 - L1MCa LINE L1 -3603 2823 2718 1528 171 35 64 chrX 140272171 140272545 -36701595 - MLT1A1 LTR MaLR -2 363 1 10606 197 64 50 chrX 140272545 140272707 -36701433 - L1MCa LINE L1 -3708 2718 2560 2432 86 0 9 chrX 140272707 140273022 -36701118 - AluSq SINE Alu -1 312 1 10606 197 64 50 chrX 140273022 140274027 -36700113 - L1MCa LINE L1 -3866 2560 1570 2365 88 3 3 chrX 140274027 140274332 -36699808 + AluSx SINE Alu 1 305 -7 10606 197 64 50 chrX 140274332 140275072 -36699068 - L1MCa LINE L1 -4856 1570 842 2410 85 0 7 chrX 140275072 140275379 -36698761 - AluSc SINE Alu -2 307 3 10606 197 64 50 chrX 140275379 140276087 -36698053 - L1MCa LINE L1 -5584 842 21 186 316 111 34 chrX 140276091 140276208 -36697932 - MIR SINE MIR -135 127 2 282 282 17 33 chrX 140276239 140276418 -36697722 + MIR SINE MIR 9 254 -8 509 259 158 25 chrX 140276582 140276740 -36697400 + MER5A DNA MER1_type 4 182 -7 830 228 11 11 chrX 140276746 140276926 -36697214 + MIR SINE MIR 5 184 -78 2350 92 16 0 chrX 140278630 140278933 -36695207 + AluSg SINE Alu 1 308 -2 305 229 105 9 chrX 140279154 140279259 -36694881 + MER103 DNA DNA 3 117 -49 417 227 164 0 chrX 140279279 140279389 -36694751 + MER91C DNA MER1_type 8 135 -5 365 250 196 16 chrX 140279597 140279781 -36694359 + MIR SINE MIR 20 236 -26 1069 184 51 0 chrX 140279783 140279878 -36694262 - MER46A DNA MER2_type 0 236 132 261 226 233 15 chrX 140279878 140280011 -36694129 + MER46A DNA MER2_type 4 165 -71 296 269 144 0 chrX 140280214 140280318 -36693822 + L2 LINE L2 3141 3259 -13 2215 107 0 7 chrX 140281463 140281771 -36692369 - AluSg1 SINE Alu -3 306 1 2174 275 46 45 chrX 140281776 140282435 -36691705 - L1MEc LINE L1 -5459 937 275 2017 112 0 10 chrX 140282435 140282756 -36691384 - AluSc SINE Alu 0 309 1 2174 275 46 45 chrX 140282756 140282982 -36691158 - L1MEc LINE L1 -6121 275 51 2422 77 3 0 chrX 140283011 140283310 -36690830 + AluSp SINE Alu 1 300 -13 32 57 0 0 chrX 140283310 140283363 -36690777 + AT_rich Low_complexity Low_complexity 1 53 0 238 245 21 11 chrX 140283500 140283582 -36690558 + (TA)n Simple_repeat Simple_repeat 1 86 -9 1641 169 0 50 chrX 140283582 140283884 -36690256 - AluJb SINE Alu -25 287 1 238 245 21 11 chrX 140283884 140283895 -36690245 + (TA)n Simple_repeat Simple_repeat 86 95 0 294 289 139 22 chrX 140283966 140284276 -36689864 - L1MC/D LINE L1 -303 5818 5508 301 195 195 8 chrX 140284317 140284435 -36689705 - L1MC/D LINE L1 -746 5432 5293 2749 206 63 31 chrX 140284669 140285257 -36688883 + MER90 LTR ERV1 1 607 -7 24 41 0 20 chrX 140285302 140285338 -36688802 + AT_rich Low_complexity Low_complexity 1 37 -11 1532 158 14 14 chrX 140285338 140285630 -36688510 - L1MA8 LINE L1 -2 6289 5998 24 41 0 20 chrX 140285630 140285642 -36688498 + AT_rich Low_complexity Low_complexity 37 48 0 276 341 31 8 chrX 140285806 140285935 -36688205 + MIR SINE MIR 61 192 -70 375 23 0 0 chrX 140286856 140286900 -36687240 + (TG)n Simple_repeat Simple_repeat 1 44 0 2551 10 0 0 chrX 140287248 140287538 -36686602 - L1PA5 LINE L1 -7 6147 5858 2276 74 0 52 chrX 140287856 140288166 -36685974 - AluSg SINE Alu -16 294 1 252 316 26 0 chrX 140288374 140288450 -36685690 - MIR SINE MIR -67 141 64 820 268 16 0 chrX 140288456 140288650 -36685490 - MIR SINE MIR -65 197 1 1680 293 102 34 chrX 140289401 140289994 -36684146 + L2 LINE L2 1173 1849 -1465 2158 108 0 43 chrX 140289994 140290318 -36683822 + AluY SINE Alu 1 310 -1 1680 293 102 34 chrX 140290318 140290628 -36683512 + L2 LINE L2 1849 2137 -1177 4417 51 4 0 chrX 140290725 140291236 -36682904 - LTR10D LTR ERV1 0 513 1 191 294 88 52 chrX 140291993 140292129 -36682011 - L2 LINE L2 -961 2353 2213 294 250 52 17 chrX 140292548 140292664 -36681476 - L1ME4a LINE L1 -22 6099 5980 704 210 27 90 chrX 140292734 140292782 -36681358 - Charlie2 DNA MER1_type -569 2293 2244 2493 64 3 0 chrX 140292782 140293080 -36681060 + AluSp SINE Alu 1 299 -14 704 210 27 90 chrX 140293080 140293450 -36680690 - Charlie2 DNA MER1_type -618 2244 1856 946 301 62 14 chrX 140293471 140293823 -36680317 - MER93a LTR ERV1 0 402 34 228 262 16 0 chrX 140294341 140294402 -36679738 - L2 LINE L2 -6 3307 3246 188 271 34 51 chrX 140295597 140295656 -36678484 - L3 LINE CR1 -4 1573 1516 450 317 126 16 chrX 140296175 140296547 -36677593 + L2 LINE L2 1592 2004 -1310 395 331 15 15 chrX 140296793 140296923 -36677217 + L2 LINE L2 3137 3266 -6 264 309 103 8 chrX 140297402 140297528 -36676612 + L2 LINE L2 3172 3309 -4 1426 162 3 63 chrX 140298052 140298336 -36675804 - AluJb SINE Alu -40 272 6 27 22 0 22 chrX 140298343 140298376 -36675764 + AT_rich Low_complexity Low_complexity 1 34 -10 2285 93 0 0 chrX 140298376 140298665 -36675475 + AluSg SINE Alu 1 289 -21 27 22 0 22 chrX 140298665 140298676 -36675464 + AT_rich Low_complexity Low_complexity 34 44 0 573 257 22 56 chrX 140298768 140298947 -36675193 - MER5B DNA MER1_type -1 177 5 2356 89 3 0 chrX 140299313 140299617 -36674523 - AluSp SINE Alu -6 307 3 1822 105 4 0 chrX 140299621 140299868 -36674272 - AluSq SINE Alu -13 300 53 354 126 37 82 chrX 140299878 140299965 -36674175 - AluSq SINE Alu -232 71 1 264 293 41 82 chrX 140299998 140300145 -36673995 + L2 LINE L2 2869 3009 -263 2342 92 0 0 chrX 140300436 140300729 -36673411 - AluY SINE Alu -18 293 1 244 250 105 0 chrX 140300760 140300836 -36673304 + L2 LINE L2 3139 3222 -50 1875 294 28 42 chrX 140301113 140301405 -36672735 + HAL1 LINE L1 1217 1511 -996 2116 95 14 0 chrX 140301405 140301690 -36672450 + AluSp SINE Alu 1 289 -24 1875 294 28 42 chrX 140301690 140302241 -36671899 + HAL1 LINE L1 1511 2049 -458 320 343 89 14 chrX 140302269 140302482 -36671658 + L1M4 LINE L1 2905 3133 -3013 587 296 108 31 chrX 140302484 140303005 -36671135 + L1M4 LINE L1 3176 3736 -2410 2801 81 3 8 chrX 140303489 140303846 -36670294 + THE1A LTR MaLR 1 355 0 2205 103 0 3 chrX 140303993 140304283 -36669857 - AluSx SINE Alu -23 289 1 239 217 0 0 chrX 140304449 140304495 -36669645 + (TG)n Simple_repeat Simple_repeat 2 47 0 559 351 50 7 chrX 140304609 140304891 -36669249 - LTR16C LTR ERVL -38 453 160 1071 121 18 0 chrX 140304919 140305084 -36669056 + L1MB1 LINE L1 6005 6172 -17 1217 197 43 47 chrX 140305091 140305435 -36668705 + L1MB7 LINE L1 5784 6134 -48 1245 187 26 37 chrX 140305731 140305772 -36668368 - L1MB1 LINE L1 -166 7421 7381 2498 72 0 0 chrX 140305772 140306078 -36668062 - AluSc SINE Alu -3 306 1 1245 187 26 37 chrX 140306078 140306809 -36667331 - L1MB1 LINE L1 -206 7381 6523 * 3557 214 28 37 chrX 140306807 140307123 -36667017 - L1MB1 LINE L1 -6646 919 602 2062 124 19 7 chrX 140307123 140307430 -36666710 + AluSq SINE Alu 1 311 -2 3557 214 28 37 chrX 140307430 140307614 -36666526 - L1MB1 LINE L1 -6963 602 418 4112 91 15 6 chrX 140307614 140308163 -36665977 + MER41A LTR ERV1 1 554 0 3557 214 28 37 chrX 140308163 140308445 -36665695 - L1MB1 LINE L1 -7147 418 143 1861 111 3 72 chrX 140308445 140308589 -36665551 - MER4A LTR ERV1 0 664 512 2319 93 0 6 chrX 140308589 140308901 -36665239 - AluSg SINE Alu 0 310 1 1861 111 3 72 chrX 140308901 140309127 -36665013 - MER4A LTR ERV1 -152 512 261 636 131 0 10 chrX 140309127 140309226 -36664914 - MER4A LTR ERV1 -566 98 1 495 213 41 25 chrX 140309226 140309348 -36664792 - L1MB1 LINE L1 -7420 145 22 2451 268 68 56 chrX 140309349 140310134 -36664006 - L1M4 LINE L1 -1508 4638 3864 2556 199 82 15 chrX 140310134 140310661 -36663479 + MER68 LTR ERV1 1 562 0 2451 268 68 56 chrX 140310661 140311134 -36663006 - L1M4 LINE L1 -2282 3864 3361 2234 103 3 0 chrX 140311134 140311434 -36662706 - AluSq SINE Alu -12 301 1 2451 268 68 56 chrX 140311434 140311492 -36662648 - L1M4 LINE L1 -2785 3361 3305 1694 161 62 0 chrX 140311517 140311839 -36662301 - LTR17 LTR ERV1 -72 708 367 232 225 83 58 chrX 140312043 140312163 -36661977 - LTR25 LTR ERV1 -77 717 595 1664 84 0 9 chrX 140312163 140312389 -36661751 - LTR17 LTR ERV1 -554 226 3 262 248 48 9 chrX 140312389 140312494 -36661646 - L1M4 LINE L1 -2833 3313 3205 227 31 31 0 chrX 140312685 140312717 -36661423 + (TG)n Simple_repeat Simple_repeat 2 34 0 1688 167 3 37 chrX 140312757 140313056 -36661084 - AluJb SINE Alu -19 293 5 807 213 0 44 chrX 140313099 140313241 -36660899 + MER58B DNA MER1_type 167 301 -2119 2226 94 0 3 chrX 140313241 140313539 -36660601 - AluY SINE Alu -14 297 1 807 213 0 44 chrX 140313539 140313579 -36660561 + MER58B DNA MER1_type 301 341 0 23 33 0 0 chrX 140313749 140313779 -36660361 + AT_rich Low_complexity Low_complexity 1 30 0 605 56 0 0 chrX 140314039 140314111 -36660029 - Alu SINE Alu -9 300 229 2267 79 7 0 chrX 140315472 140315764 -36658376 + AluSc SINE Alu 1 294 -15 1589 255 133 30 chrX 140316029 140316782 -36657358 - L2 LINE L2 0 3313 2452 405 108 11 21 chrX 140316784 140316877 -36657263 + (TG)n Simple_repeat Simple_repeat 1 92 0 246 220 0 0 chrX 140316877 140316936 -36657204 + L1MCa LINE L1 2006 2064 -4362 2199 68 18 7 chrX 140316964 140317244 -36656896 - AluSq SINE Alu -30 283 1 626 71 24 12 chrX 140317244 140317329 -36656811 + THE1A LTR MaLR 270 355 0 214 213 67 40 chrX 140317331 140317406 -36656734 + MIR SINE MIR 161 237 -25 1192 236 36 33 chrX 140317418 140317752 -36656388 - MLT1A1 LTR MaLR -21 344 10 4718 143 19 42 chrX 140317843 140318161 -36655979 - L1PB4 LINE L1 -7 6149 5825 2237 89 17 7 chrX 140318161 140318463 -36655677 - AluSq SINE Alu -8 305 1 4718 143 19 42 chrX 140318463 140318500 -36655640 - L1PB4 LINE L1 -331 5825 5789 435 38 0 0 chrX 140318500 140318553 -36655587 + (CA)n Simple_repeat Simple_repeat 2 54 0 4718 143 19 42 chrX 140318553 140319044 -36655096 - L1PB4 LINE L1 -367 5789 5322 2308 90 3 26 chrX 140319044 140319356 -36654784 - AluY SINE Alu -6 305 1 23 78 0 0 chrX 140319359 140319410 -36654730 + AT_rich Low_complexity Low_complexity 1 51 0 1652 259 91 35 chrX 140319410 140320069 -36654071 - L2 LINE L2 -1027 2287 1592 473 353 16 16 chrX 140320321 140320553 -36653587 + L2 LINE L2 2502 2736 -578 2502 171 42 5 chrX 140320553 140320963 -36653177 - MSTB LTR MaLR 0 426 2 473 353 16 16 chrX 140320963 140320982 -36653158 + L2 LINE L2 2735 2753 -561 395 242 36 67 chrX 140321239 140321433 -36652707 + LTR37B LTR ERV1 204 391 -77 668 275 56 104 chrX 140321471 140321861 -36652279 + L2 LINE L2 2754 3104 -209 2161 105 3 0 chrX 140321861 140322156 -36651984 - AluSp SINE Alu -17 296 1 668 275 56 104 chrX 140322156 140322329 -36651811 + L2 LINE L2 3104 3284 -29 520 241 0 0 chrX 140322420 140322532 -36651608 + MLT2B1 LTR ERVL 1 112 -408 1659 88 0 5 chrX 140323520 140323736 -36650404 - AluSc SINE Alu -15 294 80 490 249 36 67 chrX 140323983 140324176 -36649964 + MLT1L LTR MaLR 14 200 -415 289 305 102 47 chrX 140324295 140324551 -36649589 + MLT1L LTR MaLR 346 615 0 297 339 8 8 chrX 140325014 140325132 -36649008 + LTR67 LTR ERVL 434 551 -6 941 285 32 48 chrX 140325223 140325340 -36648800 - MLT1I LTR MaLR -20 389 272 2060 93 0 77 chrX 140325340 140325653 -36648487 - AluSx SINE Alu -23 289 1 941 285 32 48 chrX 140325653 140325844 -36648296 - MLT1I LTR MaLR -137 272 86 915 295 79 33 chrX 140326236 140326666 -36647474 - LTR16A LTR ERVL 0 450 1 24 0 0 0 chrX 140327579 140327603 -36646537 + AT_rich Low_complexity Low_complexity 1 24 0 195 321 0 0 chrX 140328322 140328375 -36645765 - MIR3 SINE MIR -39 169 117 269 266 149 25 chrX 140328999 140329274 -36644866 - L1ME4a LINE L1 -3 6118 5810 612 317 9 5 chrX 140329813 140330034 -36644106 - L1ME4a LINE L1 -330 5791 5570 2104 118 0 16 chrX 140330075 140330381 -36643759 + AluSq SINE Alu 1 301 -12 241 357 45 6 chrX 140330454 140330611 -36643529 - L1MDa LINE L1 -3557 2983 2821 681 221 0 8 chrX 140330853 140330984 -36643156 - MER58B DNA MER1_type -9 332 203 235 273 8 33 chrX 140331049 140331170 -36642970 - L1MDa LINE L1 -3981 2559 2442 22 0 0 0 chrX 140331593 140331615 -36642525 + AT_rich Low_complexity Low_complexity 1 22 0 351 267 75 33 chrX 140331689 140331809 -36642331 - HAL1 LINE L1 -1155 1352 1228 5793 164 18 22 chrX 140331875 140331967 -36642173 - L1MA6 LINE L1 0 6300 6209 2280 108 0 0 chrX 140331967 140332274 -36641866 + AluSc SINE Alu 1 307 -2 5793 164 18 22 chrX 140332274 140333580 -36640560 - L1MA6 LINE L1 -91 6209 4907 2244 88 0 26 chrX 140333723 140334029 -36640111 - AluSg SINE Alu -12 298 1 2033 98 7 49 chrX 140334900 140335207 -36638933 + AluSx SINE Alu 1 294 -18 2152 105 63 69 chrX 140335512 140335819 -36638321 - THE1B LTR MaLR -1 363 57 2274 92 30 0 chrX 140335819 140336114 -36638026 + AluSx SINE Alu 1 304 -8 2152 105 63 69 chrX 140336114 140336168 -36637972 - THE1B LTR MaLR -307 57 4 21 36 0 0 chrX 140336954 140336982 -36637158 + AT_rich Low_complexity Low_complexity 1 28 0 995 264 42 3 chrX 140337052 140337363 -36636777 + MER33 DNA MER1_type 1 323 -1 362 269 43 91 chrX 140337640 140337733 -36636407 + MIR3 SINE MIR 30 111 -97 2120 83 0 61 chrX 140337733 140338046 -36636094 - AluSx SINE Alu -18 294 1 362 269 43 91 chrX 140338046 140338138 -36636002 + MIR3 SINE MIR 111 206 -2 2526 173 109 27 chrX 140338509 140339030 -36635110 + LTR6A LTR ERV1 1 564 0 2144 79 7 18 chrX 140339466 140339745 -36634395 + AluSq SINE Alu 1 276 -37 5418 221 24 19 chrX 140340123 140341268 -36632872 + L1M1 LINE L1 12 1166 -6399 1894 148 7 26 chrX 140341268 140341571 -36632569 - AluJb SINE Alu -15 297 1 5418 221 24 19 chrX 140341571 140341614 -36632526 + L1M1 LINE L1 1166 1207 -6358 6344 114 17 23 chrX 140341619 140342751 -36631389 + L1MA1 LINE L1 5178 6302 0 326 302 22 66 chrX 140343878 140344060 -36630080 - MLT1H LTR MaLR -242 307 134 2331 93 3 0 chrX 140344189 140344491 -36629649 + AluSx SINE Alu 10 312 0 301 264 86 78 chrX 140344726 140345036 -36629104 - MLT1J2 LTR MaLR 0 450 106 1520 193 7 10 chrX 140345237 140345359 -36628781 + AluJb SINE Alu 1 122 -190 267 31 0 0 chrX 140345359 140345391 -36628749 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1520 193 7 10 chrX 140345391 140345558 -36628582 + AluJb SINE Alu 122 289 -23 2318 74 13 0 chrX 140345595 140345893 -36628247 + AluSp SINE Alu 1 302 -11 34940 77 38 3 chrX 140345991 140351918 -36622222 - L1PA5 LINE L1 -9 6145 4 23 78 0 0 chrX 140351936 140351987 -36622153 + AT_rich Low_complexity Low_complexity 1 51 0 425 229 128 22 chrX 140352434 140352613 -36621527 - MLT1F LTR MaLR -8 534 337 344 86 0 35 chrX 140352850 140352908 -36621232 - MLT2B1 LTR ERVL -3 461 406 552 100 0 0 chrX 140352908 140352988 -36621152 + (GA)n Simple_repeat Simple_repeat 1 80 0 1882 185 21 3 chrX 140352994 140353384 -36620756 - MLT2B1 LTR ERVL -71 444 1 259 307 0 13 chrX 140353384 140353459 -36620681 - MLT1J2 LTR MaLR -519 74 1 444 205 18 36 chrX 140353679 140353791 -36620349 + L1ME3 LINE L1 14 123 -6419 667 281 0 12 chrX 140354199 140354370 -36619770 + MIR SINE MIR 40 208 -54 2388 126 3 18 chrX 140354855 140355236 -36618904 + THE1C LTR MaLR 1 375 0 204 146 49 0 chrX 140355843 140355884 -36618256 + L2 LINE L2 3261 3303 -10 1061 168 0 0 chrX 140356160 140356356 -36617784 - L1MA5A LINE L1 -3 6294 6099 386 317 67 37 chrX 140356390 140356765 -36617375 + L1ME3 LINE L1 522 907 -5918 299 194 0 56 chrX 140356820 140356892 -36617248 - MER90 LTR ERV1 -27 587 520 1748 248 44 6 chrX 140357022 140357497 -36616643 - MER90 LTR ERV1 -112 502 10 243 61 0 0 chrX 140357729 140357762 -36616378 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2020 123 7 3 chrX 140357838 140358147 -36615993 - AluSq SINE Alu -3 310 1 4261 226 96 63 chrX 140358309 140359186 -36614954 + L1MC3 LINE L1 6181 7204 -581 254 263 0 13 chrX 140359186 140359262 -36614878 + MLT1F1 LTR MaLR 33 107 -460 4261 226 96 63 chrX 140359262 140359856 -36614284 + L1MC3 LINE L1 7204 7777 -8 2308 90 0 0 chrX 140359867 140360166 -36613974 + AluSc SINE Alu 1 299 -10 1740 133 0 0 chrX 140360290 140360539 -36613601 + AluY SINE Alu 35 283 -28 202 206 0 0 chrX 140360540 140360574 -36613566 + (TATG)n Simple_repeat Simple_repeat 1 34 0 424 320 58 22 chrX 140360587 140361000 -36613140 + L1ME3 LINE L1 1745 2172 -4653 609 239 8 0 chrX 140361454 140361584 -36612556 + FLAM_A SINE Alu 2 132 -1 2088 139 51 20 chrX 140361643 140361996 -36612144 - THE1B LTR MaLR 0 364 1 8282 110 1 25 chrX 140362000 140363109 -36611031 - THE1B-int LTR MaLR -4 1576 501 2190 125 0 6 chrX 140363109 140363421 -36610719 - AluSg SINE Alu 0 310 1 8282 110 1 25 chrX 140363421 140363588 -36610552 - THE1B-int LTR MaLR -1079 501 331 5910 53 147 67 chrX 140363590 140364674 -36609466 + MER11A LTR ERVK 3 1266 0 2463 69 3 0 chrX 140364674 140365009 -36609131 - THE1B-int LTR MaLR -1244 336 1 1957 97 43 117 chrX 140365009 140365061 -36609079 - THE1B LTR MaLR 0 364 310 1873 120 54 4 chrX 140365061 140365337 -36608803 + AluSx SINE Alu 13 302 -10 1957 97 43 117 chrX 140365337 140365525 -36608615 - THE1B LTR MaLR -54 310 162 2185 110 7 7 chrX 140365525 140365826 -36608314 + AluSx SINE Alu 1 301 -11 1957 97 43 117 chrX 140365826 140365977 -36608163 - THE1B LTR MaLR -202 162 1 1692 215 69 43 chrX 140365992 140366484 -36607656 + MLT1D LTR MaLR 1 505 0 499 283 112 35 chrX 140366484 140366858 -36607282 + L1ME3 LINE L1 4151 4553 -2091 1184 256 77 25 chrX 140366870 140366941 -36607199 + L1ME3 LINE L1 4649 4715 -1929 420 20 0 0 chrX 140366941 140366990 -36607150 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1184 256 77 25 chrX 140366990 140367570 -36606570 + L1ME3 LINE L1 4715 5334 -1310 460 273 67 14 chrX 140367568 140367777 -36606363 + L1ME3 LINE L1 5537 5756 -888 * 1514 284 63 16 chrX 140367778 140368552 -36605588 + L1ME3 LINE L1 5843 6653 -7 365 284 12 0 chrX 140369298 140369379 -36604761 + MER5A DNA MER1_type 108 189 0 322 366 34 17 chrX 140369385 140369560 -36604580 + L2 LINE L2 2679 2856 -458 279 130 0 0 chrX 140369712 140369766 -36604374 + (CA)n Simple_repeat Simple_repeat 1 54 0 216 236 73 0 chrX 140370325 140370380 -36603760 + L2 LINE L2 3255 3313 0 315 294 34 14 chrX 140371117 140371263 -36602877 - L2 LINE L2 -237 3035 2887 1846 121 4 0 chrX 140371611 140371860 -36602280 - AluSg SINE Alu -12 298 49 246 334 93 77 chrX 140372901 140373212 -36600928 + L2 LINE L2 2949 3264 -8 1790 71 4 0 chrX 140373677 140373902 -36600238 - AluSc SINE Alu -1 308 83 3709 124 81 17 chrX 140374661 140375368 -36598772 - Tigger3(Golem) DNA MER2_type 0 3029 2278 645 164 0 0 chrX 140375363 140375467 -36598673 - Tigger3(Golem) DNA MER2_type -2925 104 1 * 23 0 0 0 chrX 140375824 140375847 -36598293 + AT_rich Low_complexity Low_complexity 1 23 0 3636 156 49 71 chrX 140376452 140377255 -36596885 + LTR1 LTR ERV1 1 785 0 13060 145 28 23 chrX 140378117 140378214 -36595926 - Tigger1 DNA MER2_type -4 2414 2319 2368 136 6 3 chrX 140378214 140378575 -36595565 - THE1B LTR MaLR -2 362 1 13060 145 28 23 chrX 140378575 140379307 -36594833 - Tigger1 DNA MER2_type -99 2319 1592 2236 113 0 3 chrX 140379307 140379608 -36594532 - AluSg SINE Alu -10 300 1 13060 145 28 23 chrX 140379608 140381178 -36592962 - Tigger1 DNA MER2_type -826 1592 1 1814 166 3 10 chrX 140381316 140381605 -36592535 + AluJb SINE Alu 1 287 -25 432 0 0 0 chrX 140381606 140381654 -36592486 + (TA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chrX 140381894 140381917 -36592223 + AT_rich Low_complexity Low_complexity 1 23 0 2221 66 0 53 chrX 140382012 140382313 -36591827 + AluSg1 SINE Alu 7 291 -18 338 269 67 22 chrX 140382349 140382483 -36591657 + L1 LINE L1 3095 3234 -2912 2234 105 0 0 chrX 140382775 140383086 -36591054 + AluSq SINE Alu 1 311 0 193 359 63 38 chrX 140383228 140383387 -36590753 + L2 LINE L2 1603 1765 -1549 740 204 58 70 chrX 140383418 140383746 -36590394 - MER33 DNA MER1_type 0 324 1 305 308 177 5 chrX 140383799 140383997 -36590143 + L2 LINE L2 1913 2144 -1170 422 240 164 14 chrX 140384074 140384220 -36589920 + MER5A DNA MER1_type 1 168 -21 2385 87 3 0 chrX 140384231 140384529 -36589611 + AluSp SINE Alu 5 303 -10 182 246 174 0 chrX 140384833 140384902 -36589238 + L2 LINE L2 3187 3267 -5 315 286 0 54 chrX 140384907 140385019 -36589121 + MIR SINE MIR 87 192 -70 6446 136 8 46 chrX 140385774 140387760 -36586380 - L1PA11 LINE L1 -3 6171 4212 437 285 54 0 chrX 140388330 140388460 -36585680 + MIR SINE MIR 54 190 -72 386 293 17 17 chrX 140391027 140391143 -36582997 - MIR SINE MIR -99 163 48 3070 44 22 0 chrX 140391391 140391751 -36582389 + L1PA7 LINE L1 5787 6154 0 371 358 23 12 chrX 140391956 140392129 -36582011 - L2 LINE L2 -201 3071 2897 232 200 123 15 chrX 140392416 140392481 -36581659 - L2 LINE L2 -18 3295 3224 * 237 305 19 38 chrX 140392475 140392580 -36581560 + MER5A DNA MER1_type 87 189 0 7214 139 35 27 chrX 140392893 140392967 -36581173 - Tigger3b DNA MER2_type -1797 1231 1159 2398 78 0 7 chrX 140392967 140393275 -36580865 - AluY SINE Alu -5 306 1 7214 139 35 27 chrX 140393275 140394081 -36580059 - Tigger3b DNA MER2_type -1869 1159 336 2390 93 6 0 chrX 140394081 140394392 -36579748 - AluSp SINE Alu 0 313 1 7214 139 35 27 chrX 140394392 140394730 -36579410 - Tigger3b DNA MER2_type -2692 336 2 210 304 0 0 chrX 140394865 140394921 -36579219 + (CA)n Simple_repeat Simple_repeat 1 56 0 915 205 30 17 chrX 140395264 140395498 -36578642 - L1 LINE L1 -3689 2457 2221 214 247 41 0 chrX 140395500 140395597 -36578543 + (TA)n Simple_repeat Simple_repeat 1 101 0 2823 219 41 30 chrX 140395614 140396378 -36577762 + L1MA7 LINE L1 2444 3215 -2931 * 2857 206 12 0 chrX 140396375 140396943 -36577197 + L1MA7 LINE L1 3775 4349 -1797 3832 214 31 0 chrX 140397069 140397774 -36576366 + L1PA13 LINE L1 1 727 -6060 8636 168 27 3 chrX 140397775 140400011 -36574129 + L1PA13 LINE L1 4550 6810 -4 5497 164 18 13 chrX 140400015 140401827 -36572313 + L1MA7 LINE L1 4345 6162 -129 575 288 94 14 chrX 140402212 140402424 -36571716 - MIR SINE MIR 0 262 34 204 40 0 0 chrX 140402630 140402655 -36571485 + (CA)n Simple_repeat Simple_repeat 2 26 0 2618 30 0 3 chrX 140402829 140403130 -36571010 + AluY SINE Alu 1 300 -11 245 262 40 117 chrX 140403148 140403446 -36570694 - L2 LINE L2 -6 3307 3033 211 147 0 0 chrX 140404140 140404174 -36569966 - L2 LINE L2 -12 3301 3268 * 472 293 36 12 chrX 140404172 140404339 -36569801 - MIR SINE MIR -77 185 15 1935 189 11 30 chrX 140404532 140404898 -36569242 + MLT1A1 LTR MaLR 4 362 -3 282 95 0 0 chrX 140404898 140404940 -36569200 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chrX 140405449 140405470 -36568670 + AT_rich Low_complexity Low_complexity 1 21 0 2527 243 50 22 chrX 140406330 140407245 -36566895 + L1ME1 LINE L1 2407 3347 -2799 5644 161 49 5 chrX 140407280 140408381 -36565759 - L1MA9 LINE L1 -3 7011 5861 280 102 34 102 chrX 140408364 140408423 -36565717 - L1MA9 LINE L1 -234 6078 6024 * 3367 205 10 17 chrX 140408438 140409210 -36564930 - L1MA9 LINE L1 -2845 4003 3237 910 226 17 17 chrX 140409217 140409451 -36564689 + L1ME1 LINE L1 5318 5551 -615 905 207 47 0 chrX 140409447 140409640 -36564500 + L1 LINE L1 3616 3817 -2329 * 1746 276 26 18 chrX 140409639 140410245 -36563895 + L1ME1 LINE L1 5549 6159 -7 2502 264 38 46 chrX 140410361 140411238 -36562902 + L1ME3A LINE L1 5280 6149 -21 340 276 67 9 chrX 140412232 140412337 -36561803 - MIR SINE MIR 0 262 152 357 364 14 28 chrX 140413163 140413380 -36560760 + HERV16 LTR ERVL 1229 1442 -3554 180 77 0 0 chrX 140414245 140414271 -36559869 + (TCG)n Simple_repeat Simple_repeat 2 27 0 346 287 167 68 chrX 140414509 140414934 -36559206 - L1MA9 LINE L1 -5541 1308 842 261 0 0 0 chrX 140415392 140415421 -36558719 + (CA)n Simple_repeat Simple_repeat 2 30 0 1008 298 129 22 chrX 140415646 140415833 -36558307 + L2 LINE L2 2514 2680 -633 2357 68 3 0 chrX 140415833 140416129 -36558011 + AluY SINE Alu 1 297 -14 1008 298 129 22 chrX 140416129 140416651 -36557489 + L2 LINE L2 2680 3308 -5 2219 108 10 0 chrX 140416740 140417047 -36557093 + AluSp SINE Alu 1 310 -3 2506 78 3 0 chrX 140417601 140417908 -36556232 - AluSp SINE Alu -5 308 1 1170 269 61 66 chrX 140419841 140420257 -36553883 + MLT1H1 LTR MaLR 1 415 -140 207 0 0 0 chrX 140420257 140420280 -36553860 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1170 269 61 66 chrX 140420280 140420421 -36553719 + MLT1H1 LTR MaLR 415 555 0 296 146 21 0 chrX 140420507 140420555 -36553585 + MER74B LTR ERVL 5 53 -569 1134 251 69 33 chrX 140420590 140420981 -36553159 + MER74B LTR ERVL 211 615 -7 303 319 24 25 chrX 140421276 140421415 -36552725 + MIR SINE MIR 51 189 -65 186 103 0 0 chrX 140421754 140421783 -36552357 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chrX 140421926 140421947 -36552193 + (TA)n Simple_repeat Simple_repeat 1 21 0 907 96 0 15 chrX 140421947 140422071 -36552069 - L1PA6 LINE L1 -9 6145 6022 7106 156 21 18 chrX 140422377 140422615 -36551525 - L1MA3 LINE L1 0 7724 7488 2334 106 0 0 chrX 140422615 140422916 -36551224 - AluSx SINE Alu -11 301 1 7106 156 21 18 chrX 140422916 140423956 -36550184 - L1MA3 LINE L1 -236 7488 6452 2293 111 0 3 chrX 140423956 140424253 -36549887 - AluSx SINE Alu -14 298 3 7106 156 21 18 chrX 140424253 140425413 -36548727 - L1MA3 LINE L1 -1272 6452 5277 1410 93 14 23 chrX 140425416 140425631 -36548509 - pTR5 LTR ERV1 -2054 384 172 359 235 10 0 chrX 140425634 140425732 -36548408 - LTR30 LTR ERV1 -80 642 544 4250 126 91 78 chrX 140425736 140426700 -36547440 - pTR5 LTR ERV1 -417 2021 741 7298 211 22 1 chrX 140426702 140428310 -36545830 - L1MA3 LINE L1 -2284 5281 3641 902 83 91 0 chrX 140428340 140428461 -36545679 - AluSg SINE Alu -178 132 1 1039 101 0 0 chrX 140428507 140428636 -36545504 - AluSp SINE Alu -184 129 1 1865 124 11 34 chrX 140428638 140428992 -36545148 - L1MA3 LINE L1 -3933 3632 3287 1675 215 57 84 chrX 140429599 140429694 -36544446 - L1MC4 LINE L1 -3 8039 7943 2327 76 38 0 chrX 140429694 140429985 -36544155 - AluY SINE Alu -9 302 1 1675 215 57 84 chrX 140429985 140430310 -36543830 - L1MC4 LINE L1 -99 7943 7611 2677 124 3 3 chrX 140430310 140430674 -36543466 + THE1B LTR MaLR 1 364 0 10551 104 49 49 chrX 140430674 140432255 -36541885 + THE1B-int LTR MaLR 1 1580 0 2477 137 8 11 chrX 140432256 140432620 -36541520 + THE1B LTR MaLR 2 364 0 1675 215 57 84 chrX 140432620 140432795 -36541345 - L1MC4 LINE L1 -430 7612 7434 1565 88 0 15 chrX 140432795 140433000 -36541140 + AluY SINE Alu 98 299 -12 1675 215 57 84 chrX 140433000 140433565 -36540575 - L1MC4 LINE L1 -608 7434 6748 243 263 105 26 chrX 140433583 140433697 -36540443 + L1MC2 LINE L1 4918 5040 -1106 2132 104 4 0 chrX 140433777 140434047 -36540093 + AluSx SINE Alu 1 271 -41 207 69 0 0 chrX 140434057 140434086 -36540054 + (CAA)n Simple_repeat Simple_repeat 2 30 0 15735 152 14 1 chrX 140434122 140436675 -36537465 - HERVK3 LTR ERVK -4578 2665 41 2848 139 0 20 chrX 140436675 140437113 -36537027 - LTR3 LTR ERVK 0 429 1 35 63 0 0 chrX 140437225 140437288 -36536852 + AT_rich Low_complexity Low_complexity 1 63 0 1302 181 79 4 chrX 140437318 140437583 -36536557 + L1MC2 LINE L1 5566 5850 -494 2174 201 33 0 chrX 140437587 140437984 -36536156 - MSTB LTR MaLR 0 426 17 1766 155 152 17 chrX 140437985 140438249 -36535891 + MSTA LTR MaLR 1 328 -100 2547 66 0 0 chrX 140438249 140438550 -36535590 + AluY SINE Alu 1 301 -10 1766 155 152 17 chrX 140438550 140438647 -36535493 + MSTA LTR MaLR 328 411 -17 9147 188 35 2 chrX 140438662 140440261 -36533879 + MSTA-int LTR MaLR 1 1651 0 1948 148 128 55 chrX 140440261 140440618 -36533522 + MSTA LTR MaLR 1 391 -37 2460 91 0 0 chrX 140440618 140440925 -36533215 - AluSg SINE Alu -3 307 1 1948 148 128 55 chrX 140440925 140440965 -36533175 + MSTA LTR MaLR 391 427 -1 7322 190 19 11 chrX 140440987 140442624 -36531516 - MSTB-int LTR MaLR 0 1651 2 2432 159 29 7 chrX 140442626 140443042 -36531098 - MSTB LTR MaLR -1 425 1 2404 145 37 17 chrX 140443079 140443252 -36530888 + L1MC2 LINE L1 5865 6033 -311 2178 136 0 0 chrX 140443252 140443562 -36530578 - AluSq SINE Alu -3 310 1 2404 145 37 17 chrX 140443562 140443850 -36530290 + L1MC2 LINE L1 6033 6335 -9 1541 228 130 28 chrX 140443853 140444139 -36530001 + L1ME2 LINE L1 5290 5546 -618 2190 106 0 7 chrX 140444139 140444432 -36529708 - AluSx SINE Alu 0 312 22 1541 228 130 28 chrX 140444432 140444890 -36529250 + L1ME2 LINE L1 5546 6156 -8 1604 170 19 77 chrX 140445187 140445564 -36528576 + MLT1B LTR MaLR 28 382 -8 1538 203 40 19 chrX 140445575 140445954 -36528186 + Tigger6 DNA MER2_type 51 437 -646 1016 186 20 0 chrX 140445950 140446154 -36527986 + Tigger6 DNA MER2_type 1077 1284 -313 * 394 265 54 41 chrX 140446270 140446417 -36527723 - MLT2E LTR ERVL -434 194 46 1393 265 97 27 chrX 140446474 140446879 -36527261 + MLT1E2 LTR MaLR 1 462 -164 2123 107 7 0 chrX 140446879 140447194 -36526946 + AluSp SINE Alu 1 317 0 1393 265 97 27 chrX 140447194 140447372 -36526768 + MLT1E2 LTR MaLR 462 626 0 270 296 0 30 chrX 140447435 140447567 -36526573 + HAL1b LINE L1 683 810 -538 5845 90 21 11 chrX 140448234 140449121 -36525019 - L1PA11 LINE L1 -1 6173 5278 357 370 27 11 chrX 140449124 140449308 -36524832 + L1M4 LINE L1 2388 2574 -3572 3501 219 26 15 chrX 140449487 140450686 -36523454 + L1MB8 LINE L1 4936 6150 -28 1204 284 71 36 chrX 140450737 140451230 -36522910 + MLT2F LTR ERVL 128 637 -26 291 244 73 0 chrX 140451704 140451786 -36522354 - MIR SINE MIR -70 192 105 2423 74 0 3 chrX 140453136 140453433 -36520707 + AluSq SINE Alu 1 296 -17 1623 155 76 3 chrX 140453439 140453730 -36520410 - L1PA16 LINE L1 -17 6149 5838 2368 102 0 0 chrX 140454860 140455165 -36518975 + AluSx SINE Alu 1 305 -7 267 292 0 14 chrX 140455506 140455578 -36518562 + MIR3 SINE MIR 90 160 -48 221 237 13 53 chrX 140455578 140455654 -36518486 - MER5B DNA MER1_type 0 178 106 641 306 76 37 chrX 140455773 140456528 -36517612 - L1MDa LINE L1 -2640 3900 3075 3073 43 5 0 chrX 140456528 140456904 -36517236 - L1PA7 LINE L1 0 6154 5777 641 306 76 37 chrX 140456904 140457396 -36516744 - L1MDa LINE L1 -3465 3075 2604 326 334 84 33 chrX 140457990 140458220 -36515920 - L1MDa LINE L1 -861 2040 1732 1054 31 0 0 chrX 140458225 140458355 -36515785 + L1PA4 LINE L1 6024 6153 -2 505 278 62 104 chrX 140458508 140459037 -36515103 - L1MDa LINE L1 -5553 977 471 342 354 125 24 chrX 140459182 140459518 -36514622 - L2 LINE L2 -345 2969 2600 266 0 0 29 chrX 140460035 140460070 -36514070 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 415 247 52 5 chrX 140460973 140461167 -36512973 - Zaphod DNA AcHobo -550 3481 3279 21423 51 4 2 chrX 140461250 140464794 -36509346 - L1PA7 LINE L1 0 6154 2607 12159 59 2 1 chrX 140464794 140466452 -36507688 + L1PA7 LINE L1 936 2596 -3550 6548 184 17 24 chrX 140466442 140468954 -36505186 + L1M1 LINE L1 2262 4755 -2810 * 4814 92 10 7 chrX 140469018 140469727 -36504413 - LTR19-int LTR ERV1 -52 5534 4824 * 17566 94 54 46 chrX 140469726 140472861 -36501279 - LTR19-int LTR ERV1 -967 4619 1462 1742 98 8 4 chrX 140472861 140473097 -36501043 + AluSq SINE Alu 1 237 -76 244 192 19 0 chrX 140473397 140473449 -36500691 - L2 LINE L2 0 3313 3261 2124 129 3 0 chrX 140473586 140473895 -36500245 + AluSg SINE Alu 1 310 0 651 259 84 65 chrX 140473937 140474200 -36499940 - L2 LINE L2 -339 2975 2708 386 174 0 12 chrX 140474385 140474471 -36499669 + CT-rich Low_complexity Low_complexity 3 87 0 2146 109 3 13 chrX 140474698 140475009 -36499131 - AluSx SINE Alu -4 308 1 1255 204 35 15 chrX 140475719 140476062 -36498078 - L1MA8 LINE L1 -5 6286 5937 4053 128 14 2 chrX 140476079 140476717 -36497423 - L1PA15 LINE L1 -5 6160 5515 3129 220 37 39 chrX 140476718 140477583 -36496557 - L1M1 LINE L1 -6690 875 13 189 0 0 0 chrX 140478993 140479014 -36495126 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 2798 122 29 7 chrX 140479519 140479969 -36494171 + LTR46 LTR ERV1 1 460 0 2266 99 3 3 chrX 140480781 140481075 -36493065 - AluSg1 SINE Alu -15 294 1 4775 144 76 50 chrX 140481075 140482125 -36492015 - MER4A-int LTR ERV1 -1569 5029 4008 1661 114 144 4 chrX 140482125 140482388 -36491752 + AluSx SINE Alu 1 300 -2 4775 144 76 50 chrX 140482388 140482759 -36491381 - MER4A-int LTR ERV1 -2590 4008 3648 1995 134 0 13 chrX 140482759 140483058 -36491082 - AluSx SINE Alu -15 297 3 4775 144 76 50 chrX 140483058 140483569 -36490571 - MER4A-int LTR ERV1 -2950 3648 3152 183 42 0 0 chrX 140483569 140483593 -36490547 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4775 144 76 50 chrX 140483593 140483759 -36490381 - MER4A-int LTR ERV1 -3446 3152 1488 4464 161 71 16 chrX 140483755 140484793 -36489347 - MER4A-int LTR ERV1 -4304 2294 1200 * 1755 147 71 26 chrX 140484950 140485332 -36488808 + LTR10E LTR ERV1 214 612 -21 2263 128 123 60 chrX 140485338 140486402 -36487738 - MER4A-int LTR ERV1 -5416 1182 2 721 115 0 0 chrX 140486406 140486505 -36487635 - MER4A LTR ERV1 0 664 566 4199 139 80 5 chrX 140486505 140487239 -36486901 + LTR1B LTR ERV1 1 789 -37 19900 82 13 8 chrX 140487239 140489255 -36484885 - L1P LINE L1 -822 5324 3287 2068 142 0 0 chrX 140489255 140489558 -36484582 - AluSx SINE Alu -9 303 1 19900 82 13 8 chrX 140489558 140490528 -36483612 - L1P LINE L1 -2859 3287 2323 2028 141 0 0 chrX 140490528 140490832 -36483308 - AluSx SINE Alu -8 304 1 1868 149 46 32 chrX 140493140 140493510 -36480630 + THE1C LTR MaLR 1 375 0 2009 123 0 33 chrX 140493807 140493979 -36480161 - AluSx SINE Alu -20 292 133 180 0 0 0 chrX 140493979 140493999 -36480141 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2009 123 0 33 chrX 140493999 140494128 -36480012 - AluSx SINE Alu -179 133 1 2841 253 48 67 chrX 140494146 140495158 -36478982 - L2 LINE L2 -538 2776 1784 2225 99 7 3 chrX 140495264 140495566 -36478574 - AluSp SINE Alu -9 304 2 6664 44 6 1 chrX 140498816 140499677 -36474463 - L1PA7 LINE L1 -10 6144 5280 * 8696 83 2 6 chrX 140499675 140500936 -36473204 + L1PA7 LINE L1 4034 5289 -857 264 234 0 0 chrX 140501301 140501365 -36472775 + T-rich Low_complexity Low_complexity 1 64 0 351 0 0 0 chrX 140502514 140502553 -36471587 + (TG)n Simple_repeat Simple_repeat 2 40 0 393 131 60 0 chrX 140502587 140502671 -36471469 - L1ME4a LINE L1 -236 5885 5797 1748 81 0 14 chrX 140502793 140503016 -36471124 - AluSg/x SINE Alu -21 289 70 259 59 0 0 chrX 140503016 140503050 -36471090 + Alu SINE Alu 26 59 -243 322 296 103 33 chrX 140503073 140503286 -36470854 + L1ME LINE L1 4195 4422 -1724 252 0 0 0 chrX 140503291 140503319 -36470821 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2241 87 0 0 chrX 140503319 140503594 -36470546 - AluSx SINE Alu -37 275 1 246 277 73 38 chrX 140504116 140504256 -36469884 + L1ME LINE L1 4595 4729 -1417 246 32 0 0 chrX 140504256 140504287 -36469853 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 7689 21 0 0 chrX 140504289 140505460 -36468680 - L1PA3 LINE L1 -1 6154 4988 246 277 73 38 chrX 140505460 140505550 -36468590 + L1ME LINE L1 4729 4836 -1310 324 347 40 20 chrX 140505761 140506009 -36468131 + L1ME LINE L1 5043 5295 -851 292 300 54 57 chrX 140506046 140506379 -36467761 + L1ME LINE L1 5319 5650 -471 399 220 0 50 chrX 140507053 140507153 -36466987 - L2 LINE L2 0 3313 3219 1208 268 126 30 chrX 140507284 140507847 -36466293 - L2 LINE L2 0 3313 2708 2905 133 28 4 chrX 140507874 140508371 -36465769 - L1MA9 LINE L1 0 6312 5804 314 307 30 10 chrX 140508435 140508536 -36465604 + L1MC4 LINE L1 6614 6716 -1326 342 0 0 0 chrX 140508576 140508614 -36465526 + (TA)n Simple_repeat Simple_repeat 1 38 0 1833 158 12 0 chrX 140508643 140508973 -36465167 - L1M2 LINE L1 -498 5793 5460 1689 125 13 0 chrX 140508975 140509280 -36464860 + L1 LINE L1 4198 4506 -1640 1644 125 11 84 chrX 140509288 140509665 -36464475 - MER4A LTR ERV1 0 664 257 395 180 90 0 chrX 140509661 140509750 -36464390 - MER4A LTR ERV1 -566 98 2 * 550 213 0 0 chrX 140509752 140509874 -36464266 + L1 LINE L1 4533 4654 -1492 488 304 114 0 chrX 140509878 140510036 -36464104 - L2 LINE L2 -619 2695 2520 719 315 43 18 chrX 140510036 140510433 -36463707 - MER68 LTR ERV1 0 562 156 896 245 60 28 chrX 140510597 140510915 -36463225 - L2 LINE L2 -1351 1963 1636 2036 121 161 11 chrX 140510930 140511302 -36462838 - MSTA LTR MaLR 0 428 1 2360 93 0 13 chrX 140511323 140511636 -36462504 + AluSc SINE Alu 1 309 0 2571 124 5 1 chrX 140511665 140512269 -36461871 - THE1C-int LTR MaLR -934 646 1 1894 156 64 22 chrX 140512269 140512629 -36461511 - THE1C LTR MaLR 0 375 1 322 303 0 32 chrX 140512636 140512821 -36461319 + (CA)n Simple_repeat Simple_repeat 2 180 0 363 307 0 0 chrX 140512855 140513005 -36461135 + (CA)n Simple_repeat Simple_repeat 1 150 0 357 296 191 5 chrX 140513034 140513254 -36460886 - L2 LINE L2 -40 3273 3013 * 878 286 37 67 chrX 140513241 140513731 -36460409 - L2 LINE L2 -576 2738 2264 589 241 102 16 chrX 140513754 140513941 -36460199 - L2 LINE L2 0 3313 3111 189 254 63 16 chrX 140513963 140514026 -36460114 - MIR SINE MIR -73 189 124 778 351 22 47 chrX 140515437 140515799 -36458341 - L2 LINE L2 -5 3267 2915 693 183 92 13 chrX 140516015 140516168 -36457972 + MER20 DNA MER1_type 29 193 -26 207 69 0 0 chrX 140516230 140516259 -36457881 + (TATATG)n Simple_repeat Simple_repeat 2 30 0 180 275 176 33 chrX 140516494 140516585 -36457555 - MIR SINE MIR -111 151 48 188 139 70 23 chrX 140516621 140516664 -36457476 + L2 LINE L2 363 407 -2907 610 153 97 11 chrX 140517325 140517469 -36456671 - MIR3 SINE MIR -7 201 39 204 277 39 84 chrX 140517852 140518007 -36456133 + MIR SINE MIR 2 149 -113 1066 253 55 66 chrX 140518182 140518465 -36455675 - L1M4 LINE L1 -788 5358 5082 2248 109 0 6 chrX 140518465 140518777 -36455363 - AluSx SINE Alu -2 310 1 1066 253 55 66 chrX 140518777 140519022 -36455118 - L1M4 LINE L1 -1064 5082 4836 369 308 110 28 chrX 140519257 140519439 -36454701 - MIR SINE MIR -55 207 11 882 250 58 12 chrX 140519554 140519794 -36454346 - MIR SINE MIR 0 262 12 2099 107 7 3 chrX 140519814 140520113 -36454027 - AluSx SINE Alu -12 300 1 443 310 25 44 chrX 140520532 140520690 -36453450 - MIR SINE MIR -70 192 38 31 76 0 0 chrX 140521291 140521357 -36452783 + AT_rich Low_complexity Low_complexity 1 66 0 256 289 0 12 chrX 140521591 140521674 -36452466 + L2 LINE L2 3186 3267 -5 25991 35 1 8 chrX 140522032 140526220 -36447920 - L1PA4 LINE L1 -1 6154 1994 363 365 58 19 chrX 140526922 140527234 -36446906 - L3b LINE CR1 -115 1468 1145 186 43 0 0 chrX 140527378 140527401 -36446739 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 336 48 0 0 chrX 140527440 140527482 -36446658 + (TG)n Simple_repeat Simple_repeat 2 43 0 388 264 86 0 chrX 140528126 140528266 -36445874 + L1MA10 LINE L1 6180 6331 -3 2020 167 13 32 chrX 140528541 140528830 -36445310 - MLT1A1 LTR MaLR 0 365 83 1963 103 4 4 chrX 140528830 140529091 -36445049 - AluSc SINE Alu -12 297 37 2020 167 13 32 chrX 140529091 140529173 -36444967 - MLT1A1 LTR MaLR -282 83 1 525 284 93 13 chrX 140529650 140530086 -36444054 + LTR33 LTR ERVL 1 514 -7 2547 65 0 0 chrX 140530159 140530468 -36443672 - AluY SINE Alu -2 309 1 270 342 0 0 chrX 140530531 140530607 -36443533 + L2 LINE L2 3188 3263 -9 761 265 92 36 chrX 140530724 140531113 -36443027 + L1ME LINE L1 5389 5799 -322 1969 91 0 11 chrX 140531141 140531445 -36442695 + AluY SINE Alu 23 323 0 1507 129 82 112 chrX 140531529 140531931 -36442209 + MLT1B LTR MaLR 1 390 0 3950 214 52 13 chrX 140532141 140533073 -36441067 + L1M1 LINE L1 14 981 -6584 577 103 9 95 chrX 140533073 140533189 -36440951 - THE1C LTR MaLR -269 106 1 4493 114 1 6 chrX 140533189 140533865 -36440275 - THE1C-int LTR MaLR 0 1580 908 6596 120 9 9 chrX 140533870 140535655 -36438485 + L1MA1 LINE L1 4515 6298 -4 365 284 12 0 chrX 140536606 140536687 -36437453 + MER5A DNA MER1_type 108 189 0 322 366 34 17 chrX 140536693 140536868 -36437272 + L2 LINE L2 2679 2856 -458 279 130 0 0 chrX 140537020 140537074 -36437066 + (CA)n Simple_repeat Simple_repeat 1 54 0 216 236 73 0 chrX 140537633 140537688 -36436452 + L2 LINE L2 3255 3313 0 315 294 34 14 chrX 140538425 140538571 -36435569 - L2 LINE L2 -237 3035 2887 1846 121 4 0 chrX 140538919 140539168 -36434972 - AluSg SINE Alu -12 298 49 246 334 93 77 chrX 140540209 140540520 -36433620 + L2 LINE L2 2949 3264 -8 1790 71 4 0 chrX 140540985 140541210 -36432930 - AluSc SINE Alu -1 308 83 3709 124 81 17 chrX 140541969 140542676 -36431464 - Tigger3(Golem) DNA MER2_type 0 3029 2278 681 164 0 0 chrX 140542671 140542775 -36431365 - Tigger3(Golem) DNA MER2_type -2925 104 1 * 23 0 0 0 chrX 140543132 140543155 -36430985 + AT_rich Low_complexity Low_complexity 1 23 0 3577 156 49 71 chrX 140543760 140544563 -36429577 + LTR1 LTR ERV1 1 785 0 13845 145 28 23 chrX 140545425 140545522 -36428618 - Tigger1 DNA MER2_type -4 2414 2319 2363 136 6 3 chrX 140545522 140545883 -36428257 - THE1B LTR MaLR -2 362 1 13845 145 28 23 chrX 140545883 140546615 -36427525 - Tigger1 DNA MER2_type -99 2319 1592 2222 113 0 3 chrX 140546615 140546916 -36427224 - AluSg SINE Alu -10 300 1 13845 145 28 23 chrX 140546916 140548486 -36425654 - Tigger1 DNA MER2_type -826 1592 1 1788 166 3 10 chrX 140548624 140548913 -36425227 + AluJb SINE Alu 1 287 -25 510 58 35 0 chrX 140548914 140549001 -36425139 + (TA)n Simple_repeat Simple_repeat 1 90 0 23 0 0 0 chrX 140549241 140549264 -36424876 + AT_rich Low_complexity Low_complexity 1 23 0 2202 70 0 53 chrX 140549359 140549660 -36424480 + AluSg1 SINE Alu 7 291 -18 310 288 76 15 chrX 140549695 140549827 -36424313 + L1 LINE L1 3095 3234 -2912 2230 105 0 0 chrX 140550119 140550430 -36423710 + AluSq SINE Alu 1 311 0 196 359 63 38 chrX 140550572 140550731 -36423409 + L2 LINE L2 1603 1765 -1549 782 204 58 70 chrX 140550762 140551090 -36423050 - MER33 DNA MER1_type 0 324 1 310 308 177 5 chrX 140551143 140551341 -36422799 + L2 LINE L2 1913 2144 -1170 416 240 164 14 chrX 140551418 140551564 -36422576 + MER5A DNA MER1_type 1 168 -21 2326 88 7 0 chrX 140551575 140551872 -36422268 + AluSp SINE Alu 5 303 -10 187 246 174 0 chrX 140552176 140552245 -36421895 + L2 LINE L2 3187 3267 -5 319 286 0 54 chrX 140552250 140552362 -36421778 + MIR SINE MIR 87 192 -70 6487 135 9 46 chrX 140553117 140555102 -36419038 - L1PA11 LINE L1 -3 6171 4212 440 285 54 0 chrX 140555672 140555802 -36418338 + MIR SINE MIR 54 190 -72 2199 172 49 4 chrX 140556280 140556781 -36417359 - L1M2 LINE L1 -616 5684 5159 268 102 34 102 chrX 140556764 140556823 -36417317 - L1MA9 LINE L1 -234 6078 6024 * 3215 205 10 17 chrX 140556838 140557610 -36416530 - L1M2 LINE L1 -2845 3301 2535 888 226 17 17 chrX 140557617 140557851 -36416289 + L1ME1 LINE L1 5318 5551 -615 882 207 47 0 chrX 140557847 140558040 -36416100 + L1 LINE L1 3616 3817 -2329 * 1664 276 26 18 chrX 140558039 140558645 -36415495 + L1ME1 LINE L1 5549 6159 -7 2394 262 39 47 chrX 140558761 140559638 -36414502 + L1ME3A LINE L1 5280 6149 -21 749 270 37 106 chrX 140560832 140561287 -36412853 - L2 LINE L2 -17 3296 2873 739 232 107 23 chrX 140561303 140561723 -36412417 - MLT1C LTR MaLR -10 457 1 2497 62 7 0 chrX 140561737 140562043 -36412097 + AluY SINE Alu 1 308 -3 246 246 55 64 chrX 140562047 140562157 -36411983 - L2 LINE L2 -455 2859 2751 204 97 0 0 chrX 140562287 140562318 -36411822 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 1352 85 0 0 chrX 140562318 140562494 -36411646 - L1PA8 LINE L1 -24 6148 5973 409 381 50 8 chrX 140562787 140563026 -36411114 - L2 LINE L2 -497 2817 2569 675 296 71 0 chrX 140563559 140563755 -36410385 - MIR SINE MIR -7 255 46 10423 173 20 8 chrX 140565156 140567124 -36407016 + L1PA10 LINE L1 2327 4318 -1828 506 67 0 0 chrX 140667311 140667386 -36306754 - L1PA4 LINE L1 -3 6152 6078 285 0 0 0 chrX 140667386 140667418 -36306722 + L1PA4 LINE L1 5850 5881 -274 286 295 39 0 chrX 140667727 140667805 -36306335 + MIR SINE MIR 86 166 -96 285 29 0 0 chrX 140668513 140668547 -36305593 + (CA)n Simple_repeat Simple_repeat 1 34 0 266 284 0 14 chrX 140668604 140668678 -36305462 + L2 LINE L2 3237 3309 -4 190 286 63 16 chrX 140668679 140668742 -36305398 - MIR SINE MIR -116 146 81 198 0 0 0 chrX 140668768 140668790 -36305350 + (TG)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 140668805 140668828 -36305312 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 140668843 140668872 -36305268 + (TG)n Simple_repeat Simple_repeat 2 30 0 5508 115 32 49 chrX 140670406 140671114 -36303026 + L1PA10 LINE L1 4697 5416 -752 12443 24 3 0 chrX 140671114 140673351 -36300789 - L1PA3 LINE L1 -3 6152 3912 5508 115 32 49 chrX 140673351 140674140 -36300000 + L1PA10 LINE L1 5416 6168 0 264 349 48 0 chrX 140674145 140674271 -36299869 + MIR SINE MIR 121 252 -10 235 163 0 23 chrX 140674241 140674284 -36299856 + L2 LINE L2 3268 3309 -4 * 594 289 44 40 chrX 140674645 140674894 -36299246 - MIR SINE MIR -2 260 11 372 43 0 0 chrX 140675538 140675584 -36298556 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 0 0 0 chrX 140675621 140675643 -36298497 + AT_rich Low_complexity Low_complexity 1 22 0 1332 217 28 70 chrX 140675779 140675898 -36298242 - MLT1A2 LTR MaLR 0 374 252 2177 104 0 7 chrX 140675898 140676196 -36297944 + AluSx SINE Alu 1 296 -16 1332 217 28 70 chrX 140676196 140676309 -36297831 - MLT1A2 LTR MaLR -122 252 136 2121 116 0 23 chrX 140676309 140676612 -36297528 - AluSg SINE Alu -14 296 1 1332 217 28 70 chrX 140676612 140676765 -36297375 - MLT1A2 LTR MaLR -238 136 4 261 298 116 16 chrX 140676995 140677116 -36297024 + MIR3 SINE MIR 9 141 -67 230 313 38 0 chrX 140677161 140677241 -36296899 - MER81 DNA DNA -6 108 26 2210 100 3 3 chrX 140678520 140678819 -36295321 - AluY SINE Alu -12 299 1 759 157 13 13 chrX 140679217 140679370 -36294770 + L1MA7 LINE L1 6136 6288 -3 25 31 0 0 chrX 140679488 140679520 -36294620 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chrX 140679529 140679552 -36294588 + AT_rich Low_complexity Low_complexity 1 23 0 1995 115 14 3 chrX 140680224 140680510 -36293630 - AluSg SINE Alu -20 290 2 1000 153 0 0 chrX 140681783 140681980 -36292160 - AluSg/x SINE Alu 0 329 133 686 153 112 18 chrX 140682069 140682239 -36291901 - MER53 DNA DNA -1 188 3 648 314 69 6 chrX 140682274 140682702 -36291438 - L1ME LINE L1 -519 5720 5263 591 292 30 61 chrX 140682856 140683095 -36291045 - L1ME LINE L1 -3378 2837 2592 2126 97 0 69 chrX 140683095 140683415 -36290725 + AluSx SINE Alu 3 300 -12 591 292 30 61 chrX 140683415 140683736 -36290404 - L1ME LINE L1 -3623 2592 2294 223 315 24 0 chrX 140683800 140683965 -36290175 + (CATATA)n Simple_repeat Simple_repeat 2 170 0 466 328 11 11 chrX 140683980 140684154 -36289986 + (CATATA)n Simple_repeat Simple_repeat 1 174 0 453 366 0 0 chrX 140684144 140684401 -36289739 + (TATATG)n Simple_repeat Simple_repeat 1 257 0 * 246 318 23 0 chrX 140684413 140684501 -36289639 + L1MC4 LINE L1 6614 6703 -1339 471 281 0 0 chrX 140684503 140684754 -36289386 + (TATATG)n Simple_repeat Simple_repeat 1 251 0 553 162 9 0 chrX 140684793 140684898 -36289242 - L1MA6 LINE L1 0 6300 6195 332 342 26 21 chrX 140684900 140685093 -36289047 - L1ME LINE L1 -4162 2234 2041 302 322 23 0 chrX 140685526 140685613 -36288527 - MIR SINE MIR -133 129 41 351 78 0 0 chrX 140685649 140685700 -36288440 + (CA)n Simple_repeat Simple_repeat 2 52 0 432 317 8 0 chrX 140686477 140686597 -36287543 + L2 LINE L2 3189 3309 -4 2375 93 0 0 chrX 140687913 140688225 -36285915 + AluSx SINE Alu 1 312 0 616 144 101 7 chrX 140688481 140688620 -36285520 + MER96B DNA MER1_type? 88 239 -178 346 362 107 8 chrX 140688828 140689182 -36284958 - L1M4 LINE L1 -3628 2518 2130 573 229 0 0 chrX 140689354 140689466 -36284674 + L1M4 LINE L1 4915 5029 -1117 594 134 87 0 chrX 140689466 140689588 -36284552 + L1MB7 LINE L1 6047 6184 0 469 68 0 0 chrX 140690540 140690614 -36283526 - Alu SINE Alu 0 311 238 2126 67 4 0 chrX 140690614 140690884 -36283256 - AluY SINE Alu -40 271 1 225 0 0 0 chrX 140691036 140691061 -36283079 + (CA)n Simple_repeat Simple_repeat 1 25 0 489 257 95 14 chrX 140691825 140691973 -36282167 - MIR SINE MIR -42 220 61 21 36 0 0 chrX 140693119 140693147 -36280993 + AT_rich Low_complexity Low_complexity 1 28 0 1242 244 62 3 chrX 140694491 140694798 -36279342 - MER58B DNA MER1_type -2 339 15 285 361 150 6 chrX 140695018 140695198 -36278942 + MIR SINE MIR 24 229 -33 2304 109 0 0 chrX 140695719 140696031 -36278109 + AluSx SINE Alu 1 312 0 22 56 0 0 chrX 140696170 140696206 -36277934 + AT_rich Low_complexity Low_complexity 1 36 0 1251 45 0 0 chrX 140696352 140696507 -36277633 - L1PA2 LINE L1 -1 6154 6000 252 59 0 0 chrX 140696886 140696920 -36277220 + (GA)n Simple_repeat Simple_repeat 1 34 0 751 144 0 8 chrX 140697285 140697417 -36276723 + L1MA4 LINE L1 5543 5673 -627 1226 189 9 9 chrX 140697419 140697636 -36276504 + AluJb SINE Alu 68 284 -28 3403 140 9 40 chrX 140697636 140698075 -36276065 + L1MA4 LINE L1 5672 6086 -214 1787 164 0 7 chrX 140698075 140698362 -36275778 + AluJb SINE Alu 1 285 -27 3403 140 9 40 chrX 140698362 140698570 -36275570 + L1MA4 LINE L1 6086 6299 -1 1251 273 139 21 chrX 140699180 140699982 -36274158 - L1MEc LINE L1 -3126 3089 2195 325 238 0 60 chrX 140699989 140700072 -36274068 + Tigger5 DNA MER2_type 1 78 -2245 368 169 0 0 chrX 140700072 140700131 -36274009 - Tigger5 DNA MER2_type -3 2320 2262 243 88 0 0 chrX 140700133 140700167 -36273973 + (TA)n Simple_repeat Simple_repeat 1 34 0 254 316 34 51 chrX 140700816 140700933 -36273207 - L2 LINE L2 -5 3308 3194 307 159 0 0 chrX 140700933 140700977 -36273163 - LTR33 LTR ERVL 0 521 478 * 794 303 80 9 chrX 140700974 140701293 -36272847 - LTR33 LTR ERVL -152 369 7 390 254 78 88 chrX 140701525 140701809 -36272331 - L1MC5 LINE L1 -37 7924 7644 518 285 37 10 chrX 140701901 140702167 -36271973 - L1MC5 LINE L1 -516 7475 7256 788 273 47 24 chrX 140702186 140702561 -36271579 - L1MC4 LINE L1 -742 7219 6876 396 323 56 37 chrX 140703625 140703786 -36270354 - MIR3 SINE MIR -28 180 17 191 296 19 0 chrX 140703851 140703905 -36270235 - MIR3 SINE MIR -3 205 151 242 273 45 91 chrX 140703947 140704057 -36270083 - MER5B DNA MER1_type -72 106 2 306 342 26 49 chrX 140705277 140705490 -36268650 + MIR SINE MIR 2 206 -56 246 296 53 11 chrX 140706068 140706240 -36267900 + L1MC/D LINE L1 5308 5490 -631 2487 64 0 6 chrX 140706517 140706828 -36267312 + AluY SINE Alu 1 309 -2 24 53 0 0 chrX 140707025 140707063 -36267077 + AT_rich Low_complexity Low_complexity 1 38 0 264 264 86 32 chrX 140707521 140707672 -36266468 + MIR3 SINE MIR 10 164 -65 386 436 23 0 chrX 140708084 140708256 -36265884 + L2 LINE L2 3076 3251 -21 197 250 0 42 chrX 140708224 140708272 -36265868 + MIR SINE MIR 216 261 -1 * 261 0 0 0 chrX 140708272 140708301 -36265839 + (CA)n Simple_repeat Simple_repeat 2 30 0 191 36 36 0 chrX 140708300 140708328 -36265812 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 183 313 0 0 chrX 140708367 140708415 -36265725 + L2 LINE L2 3248 3295 -18 219 146 0 0 chrX 140709360 140709401 -36264739 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chrX 140709404 140709425 -36264715 + (GA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chrX 140709425 140709447 -36264693 + AT_rich Low_complexity Low_complexity 1 22 0 3813 88 14 12 chrX 140709535 140710112 -36264028 - L1MA1 LINE L1 0 7721 7144 2253 89 22 0 chrX 140710116 140710430 -36263710 + L1MA1 LINE L1 5587 5907 -395 * 2945 123 3 7 chrX 140710419 140710940 -36263200 - L1MA1 LINE L1 -597 7124 6607 * 6360 179 13 2 chrX 140710908 140712117 -36262023 - L1MA1 LINE L1 -1637 5928 4706 13462 161 47 4 chrX 140712122 140714541 -36259599 - L1MA1 LINE L1 -4305 3260 737 389 108 82 0 chrX 140714623 140714781 -36259359 + (TA)n Simple_repeat Simple_repeat 2 172 0 209 146 37 12 chrX 140714806 140714888 -36259252 + (TA)n Simple_repeat Simple_repeat 1 84 0 423 139 72 0 chrX 140715007 140715173 -36258967 + (TA)n Simple_repeat Simple_repeat 2 179 0 23 0 0 0 chrX 140715177 140715200 -36258940 + AT_rich Low_complexity Low_complexity 1 23 0 381 76 76 29 chrX 140715231 140715402 -36258738 + (TA)n Simple_repeat Simple_repeat 2 180 0 34 42 0 0 chrX 140715402 140715450 -36258690 + AT_rich Low_complexity Low_complexity 1 48 0 392 57 114 6 chrX 140715471 140715629 -36258511 + (TA)n Simple_repeat Simple_repeat 2 176 0 228 94 38 38 chrX 140715631 140715684 -36258456 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 467 88 53 41 chrX 140715699 140715869 -36258271 + (TATAA)n Simple_repeat Simple_repeat 3 174 0 260 112 60 26 chrX 140715884 140716000 -36258140 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 228 191 80 31 chrX 140716018 140716180 -36257960 + (CATA)n Simple_repeat Simple_repeat 2 171 0 25 0 0 0 chrX 140716193 140716218 -36257922 + AT_rich Low_complexity Low_complexity 1 25 0 208 97 97 10 chrX 140716224 140716327 -36257813 + (TA)n Simple_repeat Simple_repeat 2 113 0 237 186 109 0 chrX 140716761 140716917 -36257223 + (TA)n Simple_repeat Simple_repeat 1 173 0 387 139 57 44 chrX 140716962 140717120 -36257020 + (CATATA)n Simple_repeat Simple_repeat 2 161 0 458 113 57 0 chrX 140717140 140717264 -36256876 + (TA)n Simple_repeat Simple_repeat 2 132 0 242 268 0 0 chrX 140717431 140717513 -36256627 + (TA)n Simple_repeat Simple_repeat 1 82 0 280 370 78 7 chrX 140718102 140718256 -36255884 - L2 LINE L2 0 3272 3108 335 183 0 130 chrX 140718536 140718651 -36255489 + L1MC4 LINE L1 6604 6703 -1339 531 0 0 0 chrX 140718653 140718712 -36255428 + (GA)n Simple_repeat Simple_repeat 2 60 0 329 81 58 64 chrX 140719234 140719407 -36254733 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 639 252 7 32 chrX 140720286 140720448 -36253692 - MIR SINE MIR -49 159 5 1135 43 0 0 chrX 140722232 140722371 -36251769 + L1PA6 LINE L1 6011 6149 -5 2295 85 3 0 chrX 140724214 140724509 -36249631 - AluSp SINE Alu -17 296 1 32347 35 1 2 chrX 140725126 140729865 -36244275 - L1PA4 LINE L1 0 6155 1422 32 26 0 0 chrX 140730007 140730046 -36244094 + AT_rich Low_complexity Low_complexity 1 39 0 243 234 0 0 chrX 140730069 140730116 -36244024 + (TG)n Simple_repeat Simple_repeat 1 47 0 2417 227 56 22 chrX 140730191 140730782 -36243358 + MLT1E3 LTR MaLR 5 615 -9 433 176 0 0 chrX 140730810 140730884 -36243256 - FLAM_A SINE Alu -22 120 47 219 322 9 61 chrX 140731108 140731223 -36242917 + L2 LINE L2 2945 3053 -219 180 152 0 0 chrX 140731403 140731436 -36242704 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 189 74 0 0 chrX 140731786 140731813 -36242327 + (CTAG)n Simple_repeat Simple_repeat 1 27 0 183 129 0 0 chrX 140732616 140732647 -36241493 + (TG)n Simple_repeat Simple_repeat 1 31 0 26 30 0 0 chrX 140732698 140732731 -36241409 + AT_rich Low_complexity Low_complexity 1 33 0 604 258 153 48 chrX 140733068 140733421 -36240719 - L2 LINE L2 0 3313 2924 17576 175 29 24 chrX 140733817 140737901 -36236239 - L1MA1 LINE L1 -3 7718 3653 2284 95 7 0 chrX 140737901 140738197 -36235943 - AluSc SINE Alu -9 300 3 17576 175 29 24 chrX 140738197 140738299 -36235841 - L1MA1 LINE L1 -4068 3653 3553 504 151 0 0 chrX 140738299 140738385 -36235755 - L1MA1 LINE L1 -1 6301 6216 17576 175 29 24 chrX 140738385 140741679 -36232461 - L1MA1 LINE L1 -4168 3553 176 334 324 59 37 chrX 140741974 140742110 -36232030 - L2 LINE L2 0 3272 3134 216 0 0 0 chrX 140742254 140742278 -36231862 + (T)n Simple_repeat Simple_repeat 1 24 0 249 296 153 10 chrX 140742332 140742430 -36231710 + MIR SINE MIR 117 228 -34 477 283 5 65 chrX 140743164 140743348 -36230792 + MIR SINE MIR 1 173 -89 450 36 0 0 chrX 140743645 140743701 -36230439 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 637 303 83 9 chrX 140744003 140744231 -36229909 + MIR SINE MIR 10 254 -8 11743 223 79 70 chrX 140745324 140749441 -36224699 - MER66B-int LTR ERV1 -2453 4223 70 27 29 0 0 chrX 140749449 140749483 -36224657 + AT_rich Low_complexity Low_complexity 1 34 0 405 82 0 0 chrX 140749483 140749544 -36224596 - L1PB1 LINE L1 -1 6150 6090 6786 34 0 0 chrX 140749554 140750350 -36223790 - L1PA5 LINE L1 -7 6147 5352 207 0 0 0 chrX 140750350 140750373 -36223767 + (T)n Simple_repeat Simple_repeat 1 23 0 7916 12 0 0 chrX 140750378 140751624 -36222516 - L1PA2 LINE L1 -1 6154 4909 2793 181 4 4 chrX 140751706 140752192 -36221948 - MER66B LTR ERV1 0 486 1 2885 298 63 62 chrX 140752192 140753048 -36221092 + L2 LINE L2 1510 2363 -950 1295 126 0 0 chrX 140753048 140753254 -36220886 + L1MA1 LINE L1 6097 6302 0 2885 298 63 62 chrX 140753254 140754195 -36219945 + L2 LINE L2 2363 3313 0 359 260 133 12 chrX 140754374 140754547 -36219593 - L1ME LINE L1 -345 5776 5583 327 227 10 168 chrX 140754624 140754915 -36219225 - L2 LINE L2 -74 3239 2995 348 24 0 0 chrX 140755276 140755317 -36218823 + (CA)n Simple_repeat Simple_repeat 1 41 0 1772 202 70 45 chrX 140755569 140755948 -36218192 + MLT1C LTR MaLR 11 404 -63 2260 79 7 3 chrX 140755948 140756240 -36217900 + AluSc SINE Alu 1 293 -16 1772 202 70 45 chrX 140756240 140756306 -36217834 + MLT1C LTR MaLR 404 467 0 45 75 0 0 chrX 140756307 140756401 -36217739 + AT_rich Low_complexity Low_complexity 1 94 0 744 243 3 53 chrX 140756460 140756759 -36217381 - MSTD LTR MaLR -48 348 3 311 279 264 0 chrX 140756759 140756899 -36217241 - L2 LINE L2 -129 3184 3008 387 100 17 0 chrX 140756944 140757004 -36217136 + MLT1D LTR MaLR 443 503 -2 340 323 182 45 chrX 140757253 140757698 -36216442 + L2 LINE L2 2798 3302 -11 205 171 0 0 chrX 140757832 140757867 -36216273 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 23 33 0 0 chrX 140758076 140758106 -36216034 + AT_rich Low_complexity Low_complexity 1 30 0 450 335 34 59 chrX 140758312 140758742 -36215398 - L2 LINE L2 -196 3117 2672 313 386 26 0 chrX 140758975 140759164 -36214976 - L1M4 LINE L1 -1899 4247 4054 577 275 150 0 chrX 140759165 140759358 -36214782 + MLT1J LTR MaLR 3 224 -287 220 346 28 19 chrX 140759810 140759917 -36214223 - MIR SINE MIR -77 185 78 182 296 49 25 chrX 140760559 140760640 -36213500 + MER5A DNA MER1_type 57 139 -50 305 364 17 46 chrX 140761709 140761948 -36212192 + MIR SINE MIR 24 255 -7 888 175 26 90 chrX 140762076 140762310 -36211830 - MER20 DNA MER1_type 0 219 1 1485 333 36 24 chrX 140762784 140763726 -36210414 - L1PBa LINE L1 -5908 955 3 1488 222 29 36 chrX 140763745 140764191 -36209949 - L1M2 LINE L1 -4535 2314 1872 363 320 27 88 chrX 140764195 140764342 -36209798 - L1M2 LINE L1 -6048 801 664 229 284 30 0 chrX 140764407 140764474 -36209666 - L1M2 LINE L1 -6361 488 420 2477 228 11 2 chrX 140764765 140765239 -36208901 - L1M2 LINE L1 -6359 490 13 22 70 0 0 chrX 140765252 140765295 -36208845 + AT_rich Low_complexity Low_complexity 1 43 0 943 241 9 14 chrX 140765649 140765869 -36208271 + MER20 DNA MER1_type 1 219 0 203 130 43 0 chrX 140766673 140766719 -36207421 + A-rich Low_complexity Low_complexity 1 48 0 184 310 58 11 chrX 140766771 140766858 -36207282 + L2 LINE L2 1589 1679 -1635 21 0 0 0 chrX 140766858 140766879 -36207261 + AT_rich Low_complexity Low_complexity 1 21 0 217 388 29 15 chrX 140766939 140767145 -36206995 + L2 LINE L2 1716 1924 -1390 433 302 131 29 chrX 140767162 140767282 -36206858 + L2 LINE L2 3008 3114 -199 820 135 43 0 chrX 140767282 140767423 -36206717 + L1PA15 LINE L1 6019 6165 0 433 302 131 29 chrX 140767423 140767577 -36206563 + L2 LINE L2 3114 3310 -3 33 66 0 0 chrX 140768022 140768083 -36206057 + AT_rich Low_complexity Low_complexity 1 61 0 212 291 0 0 chrX 140768603 140768658 -36205482 - MIR SINE MIR -102 106 52 239 322 22 11 chrX 140769752 140769842 -36204298 - L1ME3A LINE L1 -112 6058 5968 310 352 43 14 chrX 140769916 140770126 -36204014 - L1ME3A LINE L1 -213 5949 5734 233 302 21 10 chrX 140770126 140770222 -36203918 - HAL1 LINE L1 -835 1672 1576 448 283 57 18 chrX 140770245 140770628 -36203512 - L1MEd LINE L1 -4862 1257 1009 433 304 73 45 chrX 140771676 140771896 -36202244 + MIR SINE MIR 7 232 -30 23 0 0 0 chrX 140772100 140772123 -36202017 + AT_rich Low_complexity Low_complexity 1 23 0 270 324 86 0 chrX 140772798 140772937 -36201203 + MIR SINE MIR 106 256 -6 1454 222 32 6 chrX 140773404 140773877 -36200263 + L1M4 LINE L1 2781 3265 -2881 230 116 0 70 chrX 140773893 140773936 -36200204 - MLT2D LTR ERVL -5 409 370 269 255 0 11 chrX 140773944 140774038 -36200102 + (TA)n Simple_repeat Simple_repeat 2 94 0 5006 187 37 66 chrX 140774100 140776276 -36197864 + L1PA16 LINE L1 4071 6157 -9 1414 252 29 6 chrX 140776277 140776622 -36197518 - MLT2D LTR ERVL -61 353 1 850 261 27 12 chrX 140776623 140776960 -36197180 + L1M4 LINE L1 3273 3614 -2532 34 0 0 0 chrX 140777231 140777265 -36196875 + AT_rich Low_complexity Low_complexity 1 34 0 925 255 26 4 chrX 140777380 140777611 -36196529 - L1MB7 LINE L1 -17 6167 5932 * 4682 225 53 26 chrX 140777595 140779004 -36195136 - L1MB7 LINE L1 -1254 4892 3445 283 288 115 36 chrX 140779026 140779165 -36194975 - MIR SINE MIR -88 174 25 356 336 84 26 chrX 140780200 140780281 -36193859 - L2 LINE L2 -212 3060 2985 1792 148 8 59 chrX 140780281 140780653 -36193487 + THE1A LTR MaLR 1 353 -2 356 336 84 26 chrX 140780653 140780797 -36193343 - L2 LINE L2 -287 2985 2822 522 350 95 40 chrX 140781304 140781727 -36192413 - L3 LINE CR1 -831 746 301 * 1367 289 63 19 chrX 140781704 140782513 -36191627 + L2 LINE L2 2465 3313 0 26 30 0 0 chrX 140783202 140783235 -36190905 + AT_rich Low_complexity Low_complexity 1 33 0 303 317 40 33 chrX 140783416 140783621 -36190519 + MIR SINE MIR 5 204 -32 518 286 70 73 chrX 140783891 140784276 -36189864 + HAL1 LINE L1 16 399 -2108 482 254 173 45 chrX 140784309 140784644 -36189496 + HAL1 LINE L1 695 1072 -1435 67 25 0 0 chrX 140784683 140784764 -36189376 + AT_rich Low_complexity Low_complexity 1 81 0 564 273 109 14 chrX 140784781 140785056 -36189084 + HAL1 LINE L1 1119 1419 -1088 1687 218 48 88 chrX 140785062 140785356 -36188784 - MLT1D LTR MaLR -2 503 238 642 200 0 64 chrX 140785356 140785496 -36188644 + FLAM_C SINE Alu 1 131 -2 1687 218 48 88 chrX 140785496 140785725 -36188415 - MLT1D LTR MaLR -267 238 1 1260 264 110 43 chrX 140785789 140786482 -36187658 + HAL1 LINE L1 1476 2214 -293 3280 191 43 15 chrX 140786524 140787273 -36186867 + L1MA7 LINE L1 5522 6291 0 404 150 0 0 chrX 140787274 140787334 -36186806 - L1M1 LINE L1 -746 5556 5497 433 94 0 0 chrX 140787334 140787398 -36186742 + L1MA1 LINE L1 6239 6302 0 34 0 0 0 chrX 140787398 140787432 -36186708 + AT_rich Low_complexity Low_complexity 1 34 0 365 275 95 30 chrX 140787433 140787633 -36186507 + HAL1 LINE L1 2295 2507 0 189 346 79 10 chrX 140787649 140787750 -36186390 - L2 LINE L2 -12 3301 3194 532 338 61 0 chrX 140788163 140788376 -36185764 - MIR SINE MIR 0 262 37 1760 115 0 27 chrX 140788440 140788701 -36185439 + AluSx SINE Alu 43 296 -16 579 66 0 0 chrX 140788702 140788778 -36185362 + (TA)n Simple_repeat Simple_repeat 2 77 0 2433 117 22 6 chrX 140789611 140789969 -36184171 - THE1B LTR MaLR 0 364 1 10083 131 29 7 chrX 140789969 140791515 -36182625 - THE1B-int LTR MaLR 0 1580 1 2638 113 3 0 chrX 140791548 140791911 -36182229 + THE1B LTR MaLR 1 364 0 9327 117 32 41 chrX 140791911 140793387 -36180753 + THE1B-int LTR MaLR 1 1464 -116 2125 143 15 0 chrX 140793388 140793716 -36180424 + THE1B LTR MaLR 32 364 0 2124 118 30 21 chrX 140793716 140794046 -36180094 - THE1B LTR MaLR -31 333 1 4756 174 10 22 chrX 140795442 140796334 -36177806 + L1MC3 LINE L1 6733 7613 -172 366 261 52 52 chrX 140797886 140798020 -36176120 - MIR SINE MIR -71 191 58 305 82 20 0 chrX 140798071 140798120 -36176020 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 2364 111 0 0 chrX 140798398 140798704 -36175436 - AluSg SINE Alu 0 310 5 550 273 83 67 chrX 140798870 140799390 -36174750 - L1ME3 LINE L1 -93 6028 5501 1081 264 99 37 chrX 140799393 140799708 -36174432 + MLT1I LTR MaLR 2 347 -62 549 251 203 5 chrX 140799708 140799895 -36174245 + MER58A DNA MER1_type 1 224 0 1081 264 99 37 chrX 140799895 140799961 -36174179 + MLT1I LTR MaLR 347 407 -2 424 193 45 0 chrX 140800107 140800195 -36173945 - L1MC2 LINE L1 -10 6334 6243 539 375 67 0 chrX 140801236 140801476 -36172664 + MIR SINE MIR 1 256 -6 375 230 0 0 chrX 140801913 140801987 -36172153 - MIR SINE MIR -146 116 43 593 324 16 62 chrX 140802096 140802402 -36171738 + MLT1I LTR MaLR 95 386 -23 26 0 0 0 chrX 140802541 140802567 -36171573 + AT_rich Low_complexity Low_complexity 1 26 0 319 278 52 31 chrX 140803012 140803109 -36171031 + L2 LINE L2 3142 3240 -32 22 0 0 0 chrX 140803145 140803167 -36170973 + AT_rich Low_complexity Low_complexity 1 22 0 13499 206 67 48 chrX 140803277 140809214 -36164926 + L1MA8 LINE L1 2 5815 -1436 1835 142 29 0 chrX 140809214 140809546 -36164594 - AluSx SINE Alu 0 340 1 13499 206 67 48 chrX 140809546 140810829 -36163311 + L1MA8 LINE L1 5815 7072 -179 2874 190 11 46 chrX 140810953 140811252 -36162888 + MER44D DNA MER2_type 2 329 -2158 2262 85 0 0 chrX 140811252 140811558 -36162582 - AluSc SINE Alu 0 306 1 2874 190 11 46 chrX 140811558 140811826 -36162314 + MER44D DNA MER2_type 329 605 0 1313 237 57 0 chrX 140812129 140812446 -36161694 - MER58B DNA MER1_type 0 341 7 257 353 60 9 chrX 140812772 140812888 -36161252 + L3b LINE CR1 1424 1545 -38 240 248 198 41 chrX 140813069 140813190 -36160950 + MIR SINE MIR 117 256 -6 399 282 40 0 chrX 140813976 140814100 -36160040 - MIR SINE MIR -10 252 124 753 203 54 7 chrX 140814199 140814347 -36159793 - MSTB LTR MaLR 0 426 272 776 124 0 0 chrX 140814354 140814467 -36159673 - MSTB LTR MaLR -313 113 1 396 40 0 0 chrX 140815990 140816040 -36158100 + (CA)n Simple_repeat Simple_repeat 1 50 0 390 286 84 19 chrX 140816044 140816198 -36157942 + MER112 DNA MER1_type 88 251 -9 656 251 121 20 chrX 140816298 140816497 -36157643 - MIR SINE MIR -26 236 18 11800 98 6 14 chrX 140817379 140819029 -36155111 - MER61-int LTR ERV1 -720 4497 2861 495 218 9 18 chrX 140819030 140819140 -36155000 + L1MC2 LINE L1 5438 5546 -798 1565 233 15 73 chrX 140819141 140819536 -36154604 + L1MC2 LINE L1 5843 6201 -143 342 45 0 0 chrX 140819536 140819580 -36154560 + (TG)n Simple_repeat Simple_repeat 1 44 0 1565 233 15 73 chrX 140819580 140819716 -36154424 + L1MC2 LINE L1 6201 6343 -1 759 245 14 14 chrX 140819731 140819947 -36154193 + L1MC3 LINE L1 5354 5569 -2216 336 310 61 35 chrX 140819971 140820200 -36153940 + L1MC3 LINE L1 5921 6155 -1630 35 54 0 0 chrX 140820200 140820256 -36153884 + AT_rich Low_complexity Low_complexity 1 56 0 219 353 22 29 chrX 140820256 140820392 -36153748 - L2 LINE L2 -606 2708 2574 287 311 6 28 chrX 140820703 140820880 -36153260 + GA-rich Low_complexity Low_complexity 1 173 0 300 399 0 0 chrX 140820934 140821112 -36153028 + G-rich Low_complexity Low_complexity 1 178 0 211 109 0 43 chrX 140821612 140821658 -36152482 + (AGGGGG)n Simple_repeat Simple_repeat 2 45 0 186 254 0 0 chrX 140822661 140822728 -36151412 + CT-rich Low_complexity Low_complexity 2 68 0 501 324 68 4 chrX 140825207 140825451 -36148689 - MIR SINE MIR -1 261 1 181 229 0 114 chrX 140826257 140826327 -36147813 - MIR3 SINE MIR -22 186 125 1957 194 23 13 chrX 140827100 140827486 -36146654 - MLT1B LTR MaLR 0 390 1 291 283 150 0 chrX 140827923 140828036 -36146104 + MLT1B LTR MaLR 1 130 -260 1718 218 29 11 chrX 140828072 140828517 -36145623 - L1MC3 LINE L1 -167 7618 7166 23 0 0 0 chrX 140829647 140829670 -36144470 + GC_rich Low_complexity Low_complexity 1 23 0 307 305 0 0 chrX 140831200 140831282 -36142858 + CT-rich Low_complexity Low_complexity 2 83 0 296 300 46 90 chrX 140836251 140836504 -36137636 - MIR SINE MIR -1 261 11 1746 216 29 13 chrX 140838072 140838456 -36135684 - MLT1B LTR MaLR 0 390 1 250 261 0 0 chrX 140838804 140838869 -36135271 + (TA)n Simple_repeat Simple_repeat 1 65 0 954 226 36 92 chrX 140838935 140839271 -36134869 + MLT1B LTR MaLR 64 380 -10 228 180 49 49 chrX 140839282 140839343 -36134797 - L1MC/D LINE L1 -1931 5877 5817 923 243 35 23 chrX 140839768 140840114 -36134026 + L1MC2 LINE L1 5046 5401 -920 1714 172 78 36 chrX 140840114 140840474 -36133666 + THE1C LTR MaLR 1 375 0 923 243 35 23 chrX 140840474 140840622 -36133518 + L1MC2 LINE L1 5401 5546 -775 1682 230 20 50 chrX 140840623 140841021 -36133119 + L1MC2 LINE L1 5843 6224 -120 306 87 0 0 chrX 140841021 140841067 -36133073 + (TG)n Simple_repeat Simple_repeat 1 46 0 1682 230 20 50 chrX 140841067 140841172 -36132968 + L1MC2 LINE L1 6224 6331 -13 776 236 76 13 chrX 140841178 140841415 -36132725 + L1MC3 LINE L1 5318 5569 -2426 318 304 66 26 chrX 140841442 140841669 -36132471 + L1MC3 LINE L1 5924 6159 -1626 2165 108 23 0 chrX 140841669 140841975 -36132165 - L1PA13 LINE L1 -7 6156 5844 318 349 20 0 chrX 140842023 140842172 -36131968 - L2 LINE L2 -700 2614 2463 343 275 107 50 chrX 140843581 140843945 -36130195 - L1M4 LINE L1 -1123 5023 4639 690 286 0 35 chrX 140843999 140844198 -36129942 - MLT1B-int LTR MaLR -322 1329 1138 * 926 143 7 0 chrX 140844195 140844335 -36129805 + L1P4 LINE L1 5531 5671 -495 653 195 0 0 chrX 140844353 140844466 -36129674 + L1MD1 LINE L1 6044 6156 -86 191 371 79 0 chrX 140845341 140845430 -36128710 + L2 LINE L2 3160 3255 -17 265 286 89 27 chrX 140845486 140845598 -36128542 - MIR SINE MIR -58 150 32 24 32 0 0 chrX 140845703 140845734 -36128406 + AT_rich Low_complexity Low_complexity 1 31 0 824 152 35 0 chrX 140845739 140845884 -36128256 - L1MA3 LINE L1 -7 6298 6149 279 0 0 0 chrX 140846688 140846719 -36127421 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1780 137 156 0 chrX 140847760 140848075 -36126065 + THE1B LTR MaLR 1 364 0 1150 297 24 6 chrX 140848665 140849002 -36125138 + LTR16C LTR ERVL 149 491 0 214 230 40 14 chrX 140849214 140849288 -36124852 + L2 LINE L2 2205 2280 -1034 284 304 27 36 chrX 140849914 140850026 -36124114 - MIR3 SINE MIR -54 154 44 507 280 51 17 chrX 140850288 140850463 -36123677 - MIR SINE MIR -8 254 74 19769 171 21 12 chrX 140850810 140858389 -36115751 - L1MA2 LINE L1 0 7723 73 366 237 69 52 chrX 140858747 140858920 -36115220 + MER5B DNA MER1_type 2 177 -1 468 322 98 8 chrX 140859215 140859451 -36114689 - MIR SINE MIR -3 259 3 541 303 0 29 chrX 140859779 140859954 -36114186 - MER5B DNA MER1_type -8 170 1 2721 128 16 12 chrX 140860155 140860578 -36113562 + MER61B LTR ERV1 1 425 0 904 193 29 74 chrX 140860578 140860821 -36113319 + MER61B-int LTR ERV1 1 232 -4985 * 27371 103 13 21 chrX 140860799 140860850 -36113290 + MER61B-int LTR ERV1 344 394 -4823 2315 93 0 10 chrX 140860850 140861161 -36112979 + AluSg SINE Alu 1 308 -2 27371 103 13 21 chrX 140861161 140865300 -36108840 + MER61B-int LTR ERV1 394 4497 -720 662 251 121 20 chrX 140866182 140866381 -36107759 + MIR SINE MIR 18 236 -26 366 286 84 19 chrX 140866481 140866635 -36107505 - MER112 DNA MER1_type -9 251 88 414 39 0 0 chrX 140866639 140866691 -36107449 + (TG)n Simple_repeat Simple_repeat 1 52 0 770 124 0 0 chrX 140868214 140868327 -36105813 + MSTB LTR MaLR 1 113 -313 739 203 54 7 chrX 140868334 140868482 -36105658 + MSTB LTR MaLR 272 426 0 421 282 40 0 chrX 140868581 140868705 -36105435 + MIR SINE MIR 124 252 -10 249 248 198 41 chrX 140869491 140869612 -36104528 - MIR SINE MIR -6 256 117 254 362 72 7 chrX 140869793 140869931 -36104209 - L3b LINE CR1 -38 1545 1399 1279 233 57 0 chrX 140870235 140870552 -36103588 + MER58B DNA MER1_type 7 341 0 2660 190 11 46 chrX 140870855 140871123 -36103017 - MER44D DNA MER2_type -1882 605 329 2252 85 0 0 chrX 140871123 140871429 -36102711 + AluSc SINE Alu 1 306 0 2660 190 11 46 chrX 140871429 140871728 -36102412 - MER44D DNA MER2_type -2158 329 2 12909 207 66 46 chrX 140871852 140873135 -36101005 - L1MA8 LINE L1 -179 7072 5817 1842 139 29 0 chrX 140873135 140873467 -36100673 + AluSx SINE Alu 1 340 0 12909 207 66 46 chrX 140873467 140879401 -36094739 - L1MA8 LINE L1 -1434 5817 2 22 0 0 0 chrX 140879511 140879533 -36094607 + AT_rich Low_complexity Low_complexity 1 22 0 314 278 52 31 chrX 140879569 140879666 -36094474 - L2 LINE L2 -32 3240 3142 26 0 0 0 chrX 140880111 140880137 -36094003 + AT_rich Low_complexity Low_complexity 1 26 0 593 324 16 62 chrX 140880276 140880582 -36093558 - MLT1I LTR MaLR -23 386 95 377 230 0 0 chrX 140880691 140880765 -36093375 + MIR SINE MIR 43 116 -146 564 375 67 0 chrX 140881202 140881442 -36092698 - MIR SINE MIR -6 256 1 389 193 45 0 chrX 140882483 140882571 -36091569 + L1MC2 LINE L1 6243 6334 -10 1073 262 99 37 chrX 140882717 140882783 -36091357 - MLT1I LTR MaLR -2 407 347 486 251 203 5 chrX 140882783 140882970 -36091170 - MER58A DNA MER1_type 0 224 1 1073 262 99 37 chrX 140882970 140883285 -36090855 - MLT1I LTR MaLR -62 347 2 514 306 60 55 chrX 140883288 140883722 -36090418 + L1ME3A LINE L1 5504 5939 -231 2347 111 0 0 chrX 140883974 140884280 -36089860 + AluSg SINE Alu 5 310 0 305 82 20 0 chrX 140884558 140884607 -36089533 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 373 261 52 52 chrX 140884658 140884792 -36089348 + MIR SINE MIR 58 191 -71 185 355 88 83 chrX 140885860 140886088 -36088052 + L2 LINE L2 2998 3226 -46 4623 174 10 22 chrX 140886344 140887236 -36086904 - L1MC3 LINE L1 -172 7613 6733 2099 118 30 21 chrX 140888632 140888962 -36085178 + THE1B LTR MaLR 1 333 -31 2125 143 15 0 chrX 140888962 140889290 -36084850 - THE1B LTR MaLR 0 364 32 9327 117 32 41 chrX 140889291 140890767 -36083373 - THE1B-int LTR MaLR -116 1464 1 2638 113 3 0 chrX 140890767 140891130 -36083010 - THE1B LTR MaLR 0 364 1 10083 131 29 7 chrX 140891163 140892709 -36081431 + THE1B-int LTR MaLR 1 1580 0 2433 117 22 6 chrX 140892709 140893067 -36081073 + THE1B LTR MaLR 1 364 0 507 73 0 0 chrX 140893900 140893968 -36080172 + (TA)n Simple_repeat Simple_repeat 2 69 0 1760 115 0 27 chrX 140893969 140894230 -36079910 - AluSx SINE Alu -16 296 43 532 338 61 0 chrX 140894294 140894507 -36079633 + MIR SINE MIR 37 262 0 189 346 79 10 chrX 140894920 140895021 -36079119 + L2 LINE L2 3194 3301 -12 365 275 95 30 chrX 140895037 140895237 -36078903 - HAL1 LINE L1 0 2507 2295 34 0 0 0 chrX 140895238 140895272 -36078868 + AT_rich Low_complexity Low_complexity 1 34 0 433 94 0 0 chrX 140895272 140895336 -36078804 - L1MA1 LINE L1 0 6302 6239 404 150 0 0 chrX 140895336 140895396 -36078744 + L1M1 LINE L1 5497 5556 -746 3280 191 43 15 chrX 140895397 140896146 -36077994 - L1MA7 LINE L1 0 6291 5522 1260 264 110 43 chrX 140896188 140896881 -36077259 - HAL1 LINE L1 -293 2214 1476 1687 218 48 88 chrX 140896945 140897174 -36076966 + MLT1D LTR MaLR 1 238 -267 642 200 0 64 chrX 140897174 140897314 -36076826 - FLAM_C SINE Alu -2 131 1 1687 218 48 88 chrX 140897314 140897608 -36076532 + MLT1D LTR MaLR 238 503 -2 564 273 109 14 chrX 140897614 140897889 -36076251 - HAL1 LINE L1 -1088 1419 1119 67 25 0 0 chrX 140897906 140897987 -36076153 + AT_rich Low_complexity Low_complexity 1 81 0 482 254 173 45 chrX 140898026 140898361 -36075779 - HAL1 LINE L1 -1435 1072 695 518 286 70 73 chrX 140898394 140898779 -36075361 - HAL1 LINE L1 -2108 399 16 303 317 40 33 chrX 140899049 140899254 -36074886 - MIR SINE MIR -32 176 5 26 30 0 0 chrX 140899435 140899468 -36074672 + AT_rich Low_complexity Low_complexity 1 33 0 1367 289 63 19 chrX 140900157 140900966 -36073174 - L2 LINE L2 0 3313 2465 522 350 95 40 chrX 140900943 140901366 -36072774 + L3 LINE CR1 301 746 -831 * 2493 64 0 10 chrX 140901479 140901790 -36072350 + AluY SINE Alu 1 308 -3 31 68 0 0 chrX 140902068 140902127 -36072013 + AT_rich Low_complexity Low_complexity 1 59 0 15625 157 56 12 chrX 140902127 140906342 -36067798 - L1PB1 LINE L1 -1 6866 2261 2124 125 10 6 chrX 140906342 140906654 -36067486 - AluSq SINE Alu 0 313 1 15625 157 56 12 chrX 140906654 140908955 -36065185 - L1PB1 LINE L1 -4606 2261 63 2066 102 0 0 chrX 140909064 140909329 -36064811 + AluSc SINE Alu 45 309 0 2382 90 23 6 chrX 140909605 140909950 -36064190 + L1PA13 LINE L1 5810 6160 -3 180 0 0 0 chrX 140909988 140910008 -36064132 + (T)n Simple_repeat Simple_repeat 1 20 0 713 217 37 0 chrX 140910465 140910654 -36063486 - L1MA7 LINE L1 -5 6286 6091 528 233 44 0 chrX 140910654 140910774 -36063366 + MLT1F1 LTR MaLR 69 226 -369 537 206 50 83 chrX 140910784 140910964 -36063176 - L1MA7 LINE L1 -207 6084 5911 1675 130 76 68 chrX 140910964 140911334 -36062806 + THE1C LTR MaLR 1 373 -2 4427 138 18 60 chrX 140911334 140911699 -36062441 + THE1C-int LTR MaLR 5 384 -1196 6918 68 6 14 chrX 140911699 140912978 -36061162 - L1PA8 LINE L1 -1 6171 4896 4427 138 18 60 chrX 140912978 140913447 -36060693 + THE1C-int LTR MaLR 384 804 -776 1216 100 30 30 chrX 140913454 140913654 -36060486 + THE1C-int LTR MaLR 1381 1580 0 1610 148 203 11 chrX 140913654 140914013 -36060127 + MSTA LTR MaLR 1 428 0 3530 163 18 19 chrX 140914021 140914920 -36059220 - L1MA7 LINE L1 -396 5895 5000 1147 257 141 51 chrX 140914961 140915477 -36058663 + MLT1F1 LTR MaLR 10 567 0 480 202 21 0 chrX 140915827 140915921 -36058219 + MLT1J2 LTR MaLR 68 163 -287 225 351 46 103 chrX 140916633 140916935 -36057205 - L2 LINE L2 -20 3252 2968 945 117 0 7 chrX 140917335 140917480 -36056660 + THE1-int LTR MaLR 541 684 -896 399 340 70 11 chrX 140917512 140917697 -36056443 - L1ME LINE L1 -305 5816 5621 554 277 34 0 chrX 140917754 140917902 -36056238 + MIR SINE MIR 89 241 -21 1990 285 25 17 chrX 140917927 140918559 -36055581 - L2 LINE L2 -662 2652 2016 602 317 8 50 chrX 140918653 140918912 -36055228 + MIR SINE MIR 6 253 -9 404 316 115 10 chrX 140919194 140919403 -36054737 - MIR SINE MIR -31 231 1 273 326 75 41 chrX 140920510 140920657 -36053483 + MIR3 SINE MIR 9 160 -48 663 333 37 30 chrX 140920983 140921331 -36052809 - L2 LINE L2 -277 3036 2687 663 167 0 8 chrX 140921349 140921469 -36052671 + FLAM_A SINE Alu 20 138 -4 230 216 0 200 chrX 140921469 140921502 -36052638 - L2 LINE L2 -620 2694 2656 2011 107 53 0 chrX 140921502 140921783 -36052357 + AluSp SINE Alu 1 296 -17 230 216 0 200 chrX 140921783 140921874 -36052266 - L2 LINE L2 -658 2656 2595 1727 80 0 0 chrX 140922433 140922658 -36051482 - L1P3 LINE L1 -6229 232 8 228 86 0 0 chrX 140922943 140922978 -36051162 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 309 73 15 chrX 140923263 140923331 -36050809 + MIR3 SINE MIR 85 156 -52 195 332 89 53 chrX 140924846 140925036 -36049104 - MIR3 SINE MIR -3 205 9 898 331 108 65 chrX 140925106 140926146 -36047994 + L2 LINE L2 2203 3272 0 600 299 87 11 chrX 140926223 140926407 -36047733 + MIR SINE MIR 3 200 -62 1879 168 7 68 chrX 140926413 140926823 -36047317 + MLT1B LTR MaLR 6 390 0 694 255 67 28 chrX 140926871 140927153 -36046987 + L2 LINE L2 3019 3311 -2 289 313 62 16 chrX 140927225 140927353 -36046787 - L2 LINE L2 -18 3295 3162 431 261 78 9 chrX 140927910 140928025 -36046115 - MIR3 SINE MIR -13 195 73 2525 263 69 80 chrX 140929726 140930613 -36043527 - L1M4c LINE L1 -4016 2630 1735 338 0 0 0 chrX 140930613 140930656 -36043484 + L1PA2 LINE L1 6110 6152 -3 2525 263 69 80 chrX 140930656 140930807 -36043333 - L1M4c LINE L1 -4911 1735 1584 1866 107 3 45 chrX 140930807 140931116 -36043024 - L1MA2 LINE L1 0 6304 6009 2525 263 69 80 chrX 140931116 140931809 -36042331 - L1M4c LINE L1 -5062 1584 885 216 0 0 0 chrX 140931809 140931833 -36042307 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2525 263 69 80 chrX 140931833 140931992 -36042148 - L1M4c LINE L1 -5761 885 726 198 0 0 0 chrX 140931992 140932014 -36042126 + (CA)n Simple_repeat Simple_repeat 2 23 0 2525 263 69 80 chrX 140932014 140932707 -36041433 - L1M4c LINE L1 -5920 726 13 361 318 62 50 chrX 140933318 140933658 -36040482 + HAL1b LINE L1 256 599 -749 391 281 8 0 chrX 140933787 140933908 -36040232 - L1ME2 LINE L1 -2 6162 6041 9304 189 18 17 chrX 140933923 140935433 -36038707 - L1PA15 LINE L1 -21 6795 5289 1997 92 0 0 chrX 140935433 140935704 -36038436 - L1PA8 LINE L1 -2 6170 5900 9304 189 18 17 chrX 140935704 140937146 -36036994 - L1PA15 LINE L1 -1527 5289 3850 327 261 37 93 chrX 140937147 140937308 -36036832 - L1PA15 LINE L1 -5975 812 661 1854 146 31 55 chrX 140937314 140937698 -36036442 + THE1C LTR MaLR 1 375 0 1790 103 4 0 chrX 140937698 140937951 -36036189 + THE1C-int LTR MaLR 1 254 -1326 736 240 7 0 chrX 140937949 140938103 -36036037 - L1PA15 LINE L1 -6632 155 1 * 2895 266 82 39 chrX 140938113 140938868 -36035272 - L1ME2 LINE L1 -115 6049 5328 1927 143 4 0 chrX 140938868 140939147 -36034993 - AluSx SINE Alu -4 308 29 2895 266 82 39 chrX 140939147 140940029 -36034111 - L1ME2 LINE L1 -836 5328 4485 2337 38 42 17 chrX 140940029 140940316 -36033824 + AluY SINE Alu 1 294 -17 2895 266 82 39 chrX 140940316 140940772 -36033368 - L1ME2 LINE L1 -1679 4485 4050 468 0 0 0 chrX 140940772 140940824 -36033316 + (TA)n Simple_repeat Simple_repeat 2 53 0 2444 73 0 6 chrX 140940830 140941143 -36032997 - AluY SINE Alu 0 311 1 2895 266 82 39 chrX 140941143 140941304 -36032836 - L1ME2 LINE L1 -2118 4046 3684 782 194 37 11 chrX 140941482 140941673 -36032467 - L1M4 LINE L1 -1447 5401 5206 440 305 35 0 chrX 140941673 140941814 -36032326 + L1ME1 LINE L1 5485 5630 -612 1055 248 26 16 chrX 140941816 140942119 -36032021 + L1ME1 LINE L1 5675 5980 -186 515 314 21 16 chrX 140942569 140942763 -36031377 + L2 LINE L2 2680 2874 -440 364 191 38 0 chrX 140943265 140943370 -36030770 - L1M4 LINE L1 -3991 2858 2750 416 243 139 28 chrX 140943377 140943521 -36030619 - MIR SINE MIR -56 206 47 331 308 20 28 chrX 140945083 140945239 -36028901 + L1MC/D LINE L1 5511 5665 -471 2216 118 7 0 chrX 140945467 140945773 -36028367 + AluSg1 SINE Alu 1 308 -1 2449 80 0 0 chrX 140945853 140946153 -36027987 - AluY SINE Alu -11 300 1 231 227 30 15 chrX 140946537 140946603 -36027537 + L2 LINE L2 2213 2279 -1035 733 283 82 0 chrX 140946629 140946862 -36027278 + L2 LINE L2 1772 2023 -1291 550 320 30 0 chrX 140946919 140947119 -36027021 + MLT1L LTR MaLR 410 615 0 729 273 127 14 chrX 140947119 140947394 -36026746 + L2 LINE L2 2231 2536 -778 1823 142 26 29 chrX 140947394 140947739 -36026401 - Tigger7 DNA MER2_type -1 2586 2243 739 226 204 22 chrX 140947737 140947967 -36026173 + Tigger7 DNA MER2_type 76 347 -2140 * 361 228 13 0 chrX 140947964 140948043 -36026097 - Tigger7 DNA MER2_type -653 80 1 * 1281 166 59 7 chrX 140948112 140948142 -36025998 - L1 LINE L1 -1613 4533 4506 231 61 0 0 chrX 140948142 140948175 -36025965 + (TG)n Simple_repeat Simple_repeat 2 34 0 1281 166 59 7 chrX 140948175 140948451 -36025689 - L1 LINE L1 -1640 4506 4211 * 2871 175 31 1 chrX 140948442 140949353 -36024787 - L1M1 LINE L1 -541 7183 6246 1688 154 6 14 chrX 140949343 140949500 -36024640 - L1M1 LINE L1 -4385 3180 3023 * 2190 119 37 6 chrX 140949500 140949853 -36024287 - THE1B LTR MaLR 0 364 1 1688 154 6 14 chrX 140949853 140950046 -36024094 - L1M1 LINE L1 -4542 3023 2833 2163 147 89 5 chrX 140950046 140950441 -36023699 + MSTA LTR MaLR 1 428 0 7406 199 42 16 chrX 140950441 140951837 -36022303 + MSTA-int LTR MaLR 1 1360 -291 2237 162 8 11 chrX 140951837 140952213 -36021927 - THE1C LTR MaLR 0 375 1 9375 146 28 14 chrX 140952213 140953771 -36020369 - THE1C-int LTR MaLR 0 1580 1 2134 140 27 16 chrX 140953771 140954142 -36019998 - THE1C LTR MaLR 0 375 1 7406 199 42 16 chrX 140954142 140954353 -36019787 + MSTA-int LTR MaLR 1359 1651 0 2218 135 32 53 chrX 140954353 140954543 -36019597 + MSTA LTR MaLR 1 193 -235 2335 86 0 20 chrX 140954543 140954845 -36019295 + AluY SINE Alu 1 296 -15 2218 135 32 53 chrX 140954845 140955085 -36019055 + MSTA LTR MaLR 193 422 -6 5691 144 32 10 chrX 140955090 140955596 -36018544 - L1M1 LINE L1 -4727 2838 2345 1714 199 7 0 chrX 140955596 140955898 -36018242 - AluJb SINE Alu -6 306 3 5691 144 32 10 chrX 140955898 140956448 -36017692 - L1M1 LINE L1 -5220 2345 1759 595 120 19 9 chrX 140956451 140956559 -36017581 + CT-rich Low_complexity Low_complexity 1 109 0 200 42 0 0 chrX 140956559 140956583 -36017557 + (TCTCCC)n Simple_repeat Simple_repeat 3 26 0 8075 191 9 65 chrX 140956585 140958439 -36015701 - L1M1 LINE L1 -5799 1766 16 400 261 193 6 chrX 140958457 140958618 -36015522 + L2 LINE L2 3104 3294 -19 393 268 22 58 chrX 140958997 140959135 -36015005 + MER5B DNA MER1_type 1 133 -45 4415 177 14 31 chrX 140959517 140959613 -36014527 - L1MA7 LINE L1 -1 6290 6194 2323 122 3 37 chrX 140959613 140959990 -36014150 + THE1B LTR MaLR 1 364 0 4415 177 14 31 chrX 140959990 140960060 -36014080 - L1MA7 LINE L1 -97 6194 6124 1776 172 0 27 chrX 140960060 140960357 -36013783 + AluSx SINE Alu 1 289 -23 4415 177 14 31 chrX 140960357 140961225 -36012915 - L1MA7 LINE L1 -167 6124 5272 1321 142 26 8 chrX 140961220 140961487 -36012653 - L1MA7 LINE L1 -1510 4636 4365 * 182 333 0 30 chrX 140962141 140962207 -36011933 + L2 LINE L2 3203 3266 -6 510 258 78 66 chrX 140962373 140962617 -36011523 + MIR SINE MIR 15 261 -1 1528 42 0 11 chrX 140962816 140963006 -36011134 - L1PA8 LINE L1 -1 6171 5984 381 219 49 24 chrX 140963415 140963569 -36010571 + MIR SINE MIR 39 146 -62 799 275 101 22 chrX 140963885 140964252 -36009888 - MSTD LTR MaLR 0 396 1 202 314 51 39 chrX 140964253 140964409 -36009731 + MIR SINE MIR 92 249 -13 1627 187 139 13 chrX 140965200 140965580 -36008560 - MSTA LTR MaLR 0 428 1 325 78 0 62 chrX 140965580 140965644 -36008496 - MSTA-int LTR MaLR 0 1580 1521 748 127 63 39 chrX 140965646 140965906 -36008234 + THE1C LTR MaLR 3 318 -57 24 32 0 0 chrX 140965916 140965947 -36008193 + AT_rich Low_complexity Low_complexity 1 31 0 410 168 0 1 chrX 140965957 140966033 -36008107 + MSTA LTR MaLR 361 428 0 3220 123 225 39 chrX 140966033 140966725 -36007415 + MSTA-int LTR MaLR 1 821 -759 4566 155 14 55 chrX 140966725 140967662 -36006478 - MSTA-int LTR MaLR -680 900 3 740 160 146 0 chrX 140967664 140967808 -36006332 - MSTA LTR MaLR 0 428 264 1818 184 97 35 chrX 140967821 140968337 -36005803 - LTR10A LTR ERV1 -61 548 1 1087 178 116 12 chrX 140968337 140968579 -36005561 - MSTA LTR MaLR -161 267 1 269 253 35 23 chrX 140968687 140968774 -36005366 + MIR SINE MIR 56 143 -119 30 0 0 0 chrX 140970014 140970044 -36004096 + AT_rich Low_complexity Low_complexity 1 30 0 490 293 50 14 chrX 140970246 140970536 -36003604 - L1ME LINE L1 -497 5624 5326 24 53 0 0 chrX 140971530 140971568 -36002572 + AT_rich Low_complexity Low_complexity 1 38 0 1537 76 9 0 chrX 140972839 140973050 -36001090 + L1PA13 LINE L1 5949 6161 -2 192 40 0 0 chrX 140973249 140973274 -36000866 + (A)n Simple_repeat Simple_repeat 1 25 0 1612 274 22 20 chrX 140973380 140973935 -36000205 - L1MC4a LINE L1 -30 7778 7223 305 371 67 16 chrX 140973935 140974248 -35999892 - L2 LINE L2 -600 2714 2386 491 321 29 48 chrX 140974276 140974587 -35999553 - L2 LINE L2 -634 2680 2376 976 273 15 21 chrX 140974622 140974952 -35999188 + L1MC4a LINE L1 7454 7781 -27 418 366 31 16 chrX 140975206 140975400 -35998740 + L2 LINE L2 2760 2956 -358 410 341 64 38 chrX 140975419 140975683 -35998457 + L2 LINE L2 2606 2876 -438 2308 94 0 0 chrX 140975801 140976098 -35998042 - AluSx SINE Alu -15 297 1 617 239 0 12 chrX 140976167 140976330 -35997810 + L1MEc LINE L1 1887 2047 -4349 570 239 0 0 chrX 140976938 140977080 -35997060 + L1MEc LINE L1 2233 2374 -4022 835 228 133 11 chrX 140977084 140977431 -35996709 + L1MEc LINE L1 3619 4007 -2208 424 276 32 32 chrX 140978189 140978410 -35995730 - HAL1 LINE L1 -855 1652 1432 254 312 41 0 chrX 140978561 140978731 -35995409 - L1ME4a LINE L1 -190 5931 5755 5111 92 4 32 chrX 140978832 140979562 -35994578 - L1PB2 LINE L1 -2 6149 5443 2223 106 30 0 chrX 140979562 140979863 -35994277 - AluSx SINE Alu -2 310 1 5111 92 4 32 chrX 140979863 140979948 -35994192 - L1PB2 LINE L1 -708 5443 5357 2325 150 10 17 chrX 140979948 140980354 -35993786 - MER57A LTR ERV1 0 403 1 1601 119 19 11 chrX 140980354 140980615 -35993525 - MER57A-int LTR ERV1 0 7537 7275 599 125 50 8 chrX 140980618 140980738 -35993402 - LTR54B LTR ERV1 -371 127 3 9218 128 9 26 chrX 140980738 140981658 -35992482 - MER57A-int LTR ERV1 -391 7146 6263 4464 36 0 2 chrX 140981658 140982190 -35991950 - L1PA5 LINE L1 0 6154 5624 9218 128 9 26 chrX 140982190 140982849 -35991291 - MER57A-int LTR ERV1 -1274 6263 5594 449 184 20 0 chrX 140982849 140982947 -35991193 + (CATA)n Simple_repeat Simple_repeat 2 101 0 3106 122 10 4 chrX 140982955 140983455 -35990685 - MER57A-int LTR ERV1 -1938 5599 5097 266 291 8 8 chrX 140984091 140984325 -35989815 - HSAT4 Satellite centromeric -12 234 1 314 291 3 3 chrX 140984683 140984952 -35989188 - HSAT4 Satellite centromeric -7 269 1 347 273 0 0 chrX 140985066 140985406 -35988734 - HSAT4 Satellite centromeric -7 340 1 251 312 0 0 chrX 140985695 140985788 -35988352 - HSAT4 Satellite centromeric -5 100 8 1789 181 23 0 chrX 140985802 140986144 -35987996 - MER57A LTR ERV1 -51 352 3 11103 220 41 13 chrX 140986145 140987399 -35986741 - L1 LINE L1 -786 5360 4142 2566 34 0 12 chrX 140987399 140987711 -35986429 + L1PA5 LINE L1 5839 6154 0 11103 220 41 13 chrX 140987711 140989578 -35984562 - L1 LINE L1 -2004 4142 2152 262 281 16 25 chrX 140989581 140989702 -35984438 - L1ME LINE L1 -456 5665 5546 458 299 0 0 chrX 140990435 140990569 -35983571 + MER117 DNA MER1_type 2 135 -62 276 30 0 0 chrX 140990586 140990619 -35983521 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chrX 140991082 140991104 -35983036 + AT_rich Low_complexity Low_complexity 1 22 0 583 208 9 0 chrX 140991710 140991816 -35982324 + MIR SINE MIR 41 147 -115 527 216 75 85 chrX 140991861 140992060 -35982080 - LTR48B LTR ERV1 0 644 448 320 258 56 16 chrX 140992166 140992334 -35981806 - LTR48 LTR ERV1 -411 131 1 299 167 67 0 chrX 140992565 140992625 -35981515 - LTR48 LTR ERV1 -115 672 609 255 216 10 59 chrX 140992668 140992770 -35981370 - LTR48 LTR ERV1 -312 475 379 906 187 123 0 chrX 140992791 140992994 -35981146 - MER34C LTR ERV1 -352 233 6 335 250 29 10 chrX 140993091 140993195 -35980945 - MIR SINE MIR -108 154 49 202 182 0 0 chrX 140993596 140993629 -35980511 + (CAG)n Simple_repeat Simple_repeat 2 34 0 1403 24 6 0 chrX 140993832 140994074 -35980066 + L1PA4 LINE L1 5985 6227 0 225 159 0 0 chrX 140995061 140995105 -35979035 + (CA)n Simple_repeat Simple_repeat 2 45 0 518 279 7 15 chrX 140995836 140995972 -35978168 + L1M3f LINE L1 19 153 -5175 224 143 0 0 chrX 140996403 140996438 -35977702 + MER5A DNA MER1_type 1 35 -154 832 162 5 24 chrX 140996438 140996586 -35977554 - L1ME LINE L1 -690 5466 5359 2179 118 9 20 chrX 140996586 140996932 -35977208 + L1MA1 LINE L1 5950 6293 -9 832 162 5 24 chrX 140996932 140996946 -35977194 - L1ME LINE L1 -797 5359 5346 421 284 0 17 chrX 140996984 140997100 -35977040 + MER5A DNA MER1_type 76 189 0 271 150 0 100 chrX 140997203 140997283 -35976857 + MER53 DNA DNA 4 75 -114 442 224 82 93 chrX 140997407 140997590 -35976550 - MIR SINE MIR -4 258 78 314 280 0 9 chrX 140997611 140997718 -35976422 + L1M4 LINE L1 4507 4612 -1534 265 196 135 30 chrX 140997901 140998034 -35976106 + L1ME4a LINE L1 5962 6108 -13 447 81 0 0 chrX 140998086 140998148 -35975992 + Alu SINE Alu 1 62 -256 2500 153 36 0 chrX 140998396 140998809 -35975331 - MSTA LTR MaLR 0 428 1 273 257 211 9 chrX 140998846 140998955 -35975185 - MIR SINE MIR -126 136 6 259 333 105 60 chrX 140998955 140999401 -35974739 + L2 LINE L2 2348 2825 -489 1588 221 28 8 chrX 140999401 140999759 -35974381 - MLT1A1 LTR MaLR 0 365 1 259 333 105 60 chrX 140999759 140999865 -35974275 + L2 LINE L2 2825 2925 -389 2164 146 11 35 chrX 140999921 141000300 -35973840 - THE1B LTR MaLR 0 457 1 214 315 120 37 chrX 141001515 141001623 -35972517 + MIR SINE MIR 6 122 -140 2267 94 3 10 chrX 141001647 141001946 -35972194 + AluSp SINE Alu 1 297 -16 186 348 45 0 chrX 141003468 141003557 -35970583 + MIR SINE MIR 3 95 -167 555 251 87 11 chrX 141004124 141004307 -35969833 + L2 LINE L2 2865 3061 -252 466 93 0 13 chrX 141004322 141004397 -35969743 - L1PA8 LINE L1 0 6172 6099 227 359 9 108 chrX 141004558 141004781 -35969359 - L2 LINE L2 -95 3177 2977 405 0 0 0 chrX 141005405 141005450 -35968690 + (TA)n Simple_repeat Simple_repeat 1 45 0 6318 92 6 0 chrX 141005505 141006359 -35967781 - THE1B-int LTR MaLR -721 859 1 2054 125 60 26 chrX 141006359 141006711 -35967429 - THE1B LTR MaLR 0 364 1 4820 139 64 40 chrX 141006711 141007427 -35966713 + MER4A-int LTR ERV1 464 1162 -5436 1786 178 19 27 chrX 141007427 141007803 -35966337 - THE1C LTR MaLR 0 375 3 9063 142 47 16 chrX 141007805 141009338 -35964802 - THE1C-int LTR MaLR 0 1580 1 1731 155 36 75 chrX 141009340 141009728 -35964412 - THE1C LTR MaLR -2 373 1 4820 139 64 40 chrX 141009728 141010142 -35963998 + MER4A-int LTR ERV1 1162 1565 -5033 3094 164 72 55 chrX 141010142 141010821 -35963319 - LTR8 LTR ERV1 0 691 1 4820 139 64 40 chrX 141010821 141011718 -35962422 + MER4A-int LTR ERV1 1565 3677 -2921 2840 118 92 25 chrX 141011718 141012241 -35961899 + MER4A-int LTR ERV1 3818 4375 -2223 1701 124 4 15 chrX 141012219 141012486 -35961654 + MER4A-int LTR ERV1 6335 6598 0 * 909 97 0 52 chrX 141012487 141012641 -35961499 + MER4A LTR ERV1 1 146 -518 1738 148 5 32 chrX 141012668 141013032 -35961108 + MER4A LTR ERV1 252 664 0 883 247 82 8 chrX 141013032 141013291 -35960849 - MLT1D LTR MaLR -226 279 1 302 257 171 9 chrX 141013293 141013398 -35960742 - MIR SINE MIR -110 152 31 1294 39 0 0 chrX 141015579 141015765 -35958375 + L1PA4 LINE L1 5983 6168 0 2031 128 10 0 chrX 141016167 141016456 -35957684 - AluSx SINE Alu -18 294 3 22 56 0 0 chrX 141016803 141016839 -35957301 + AT_rich Low_complexity Low_complexity 1 36 0 874 285 178 5 chrX 141017011 141017394 -35956746 + L2 LINE L2 2092 2540 -774 204 329 0 25 chrX 141017439 141017518 -35956622 + L2 LINE L2 2549 2625 -689 510 288 16 21 chrX 141017591 141017782 -35956358 - L2 LINE L2 -2523 791 602 206 211 18 18 chrX 141018332 141018389 -35955751 + (TA)n Simple_repeat Simple_repeat 1 57 0 29 0 0 0 chrX 141019463 141019492 -35954648 + AT_rich Low_complexity Low_complexity 1 29 0 1713 185 49 59 chrX 141019492 141019918 -35954222 + MLT1C LTR MaLR 38 459 -8 1000 223 177 0 chrX 141020009 141020291 -35953849 - MER58B DNA MER1_type -5 336 5 184 353 71 0 chrX 141020332 141020417 -35953723 + MIR SINE MIR 60 150 -112 2618 159 22 4 chrX 141020424 141020962 -35953178 + L1MA4 LINE L1 5782 6328 0 1641 81 13 4 chrX 141021008 141021244 -35952896 - L1MA1 LINE L1 0 6302 6065 618 168 9 0 chrX 141021244 141021351 -35952789 + L1MA1 LINE L1 5926 6033 -269 785 245 34 0 chrX 141021351 141021515 -35952625 + MER45A DNA AcHobo 11 178 0 1256 217 26 32 chrX 141023303 141023613 -35950527 - MLT1D LTR MaLR -43 581 154 268 59 39 20 chrX 141023664 141023715 -35950425 + (TTTTG)n Simple_repeat Simple_repeat 3 54 0 1238 293 58 33 chrX 141023746 141024491 -35949649 - L2 LINE L2 -122 3191 2436 426 234 53 0 chrX 141024491 141024585 -35949555 + MIR SINE MIR 80 178 -84 362 327 84 40 chrX 141024600 141024826 -35949314 - MIR SINE MIR -6 256 21 198 0 0 0 chrX 141026035 141026057 -35948083 + (T)n Simple_repeat Simple_repeat 1 22 0 1835 32 0 0 chrX 141027073 141027293 -35946847 + L1PA4 LINE L1 5931 6150 -5 288 300 53 13 chrX 141027879 141028029 -35946111 + L1ME LINE L1 5508 5663 -458 862 208 112 0 chrX 141028058 141028255 -35945885 + MER20 DNA MER1_type 1 219 0 24 0 0 0 chrX 141028426 141028450 -35945690 + AT_rich Low_complexity Low_complexity 1 24 0 553 38 25 0 chrX 141028984 141029064 -35945076 + (TG)n Simple_repeat Simple_repeat 2 83 0 1570 237 73 23 chrX 141029152 141029633 -35944507 + MLT1D LTR MaLR 1 505 0 370 280 62 64 chrX 141029958 141030103 -35944037 + MIR SINE MIR 1 144 -64 5719 188 32 44 chrX 141030426 141031535 -35942605 - Charlie1a DNA MER1_type -1466 1295 202 2172 122 0 0 chrX 141031535 141031839 -35942301 - AluSx SINE Alu -8 304 1 5719 188 32 44 chrX 141031839 141032033 -35942107 - Charlie1a DNA MER1_type -2559 202 7 4092 143 8 3 chrX 141032593 141033259 -35940881 + L1PA15 LINE L1 5491 6159 -6 486 340 60 17 chrX 141033509 141033741 -35940399 + MIR SINE MIR 15 256 -6 820 160 32 16 chrX 141033882 141034070 -35940070 + L1MA7 LINE L1 6099 6289 -2 453 287 200 0 chrX 141034144 141034294 -35939846 + MER5A DNA MER1_type 9 188 -1 1556 207 58 9 chrX 141034481 141034829 -35939311 - MLT1A1 LTR MaLR 0 365 1 451 302 116 17 chrX 141035210 141035382 -35938758 - MER5A DNA MER1_type 0 189 1 226 326 22 11 chrX 141035551 141035643 -35938497 - MIR SINE MIR -169 93 1 383 268 29 65 chrX 141035657 141035795 -35938345 + MIR SINE MIR 54 186 -76 2810 56 0 0 chrX 141036554 141036909 -35937231 + L1PA5 LINE L1 5798 6152 -2 274 163 61 0 chrX 141037559 141037608 -35936532 - L2 LINE L2 0 3313 3262 735 300 0 6 chrX 141037907 141038067 -35936073 + MER45A DNA AcHobo 1 159 -19 419 287 33 8 chrX 141038745 141038867 -35935273 + L2 LINE L2 3189 3313 0 1610 170 36 49 chrX 141038899 141039287 -35934853 - L1MC2 LINE L1 0 6333 5918 230 227 0 0 chrX 141039315 141039359 -35934781 + Tigger5 DNA MER2_type 2277 2320 -3 * 302 194 0 151 chrX 141039359 141039403 -35934737 - Tigger5 DNA MER2_type -288 78 53 3909 150 32 4 chrX 141039403 141040110 -35934030 - L1MA6 LINE L1 -5 6295 5569 302 194 0 151 chrX 141040110 141040157 -35933983 - Tigger5 DNA MER2_type -313 53 1 1445 210 7 7 chrX 141040158 141040458 -35933682 - L1MC2 LINE L1 -422 5922 5623 322 268 24 67 chrX 141040491 141040655 -35933485 + MLT1K LTR MaLR 432 588 0 3721 117 7 0 chrX 141040729 141041287 -35932853 + L1PA14 LINE L1 5591 6152 -9 228 363 64 6 chrX 141041941 141042098 -35932042 - L2 LINE L2 -985 2329 2164 1585 237 103 11 chrX 141042260 141042724 -35931416 + MER97a DNA MER1_type? 22 528 -366 691 150 31 100 chrX 141044359 141044390 -35929750 - AluJo/FRAM SINE Alu -10 302 270 1856 148 0 41 chrX 141044390 141044708 -35929432 + AluSx SINE Alu 1 305 -7 691 150 31 100 chrX 141044708 141044836 -35929304 - AluJo/FRAM SINE Alu -42 270 154 286 136 0 55 chrX 141044948 141045191 -35928949 + (TA)n Simple_repeat Simple_repeat 1 229 0 326 338 31 19 chrX 141045835 141045995 -35928145 - LTR16A1 LTR ERVL -2 455 294 543 198 0 0 chrX 141045996 141046097 -35928043 - L1M3 LINE L1 -580 5591 5491 289 93 37 0 chrX 141046101 141046155 -35927985 + (TA)n Simple_repeat Simple_repeat 2 57 0 1143 161 0 5 chrX 141046173 141046390 -35927750 - L1M3 LINE L1 -837 5475 5260 3498 187 57 59 chrX 141046402 141047317 -35926823 - MER21A LTR ERV1 -4 927 15 16950 37 1 0 chrX 141047317 141049507 -35924633 - L1PA5 LINE L1 -2268 3878 1686 12009 48 8 1 chrX 141049507 141051758 -35922382 + L1PA5 LINE L1 3885 6142 -12 386 57 57 0 chrX 141051758 141051828 -35922312 + (TA)n Simple_repeat Simple_repeat 1 74 0 321 145 60 24 chrX 141051828 141051911 -35922229 - L1MCa LINE L1 -4361 2065 1980 340 26 103 0 chrX 141051915 141051993 -35922147 + (TA)n Simple_repeat Simple_repeat 1 86 0 4346 210 28 10 chrX 141052590 141053750 -35920390 - L1M3 LINE L1 -891 5255 4075 3065 187 25 40 chrX 141053746 141054313 -35919827 + L1MA10 LINE L1 5587 6142 -192 * 333 0 0 0 chrX 141054313 141054350 -35919790 + (CA)n Simple_repeat Simple_repeat 2 38 0 3065 187 25 40 chrX 141054350 141054541 -35919599 + L1MA10 LINE L1 6142 6334 0 278 321 37 22 chrX 141054572 141054706 -35919434 - LTR16A1 LTR ERVL -186 271 136 21 36 0 0 chrX 141054877 141054905 -35919235 + AT_rich Low_complexity Low_complexity 1 28 0 1216 339 24 31 chrX 141054911 141055847 -35918293 - ERVL LTR ERVL -426 5338 4410 335 315 0 0 chrX 141055856 141055945 -35918195 + L1MC4 LINE L1 6614 6702 -1340 215 200 0 0 chrX 141055946 141055981 -35918159 + (TG)n Simple_repeat Simple_repeat 1 35 0 352 319 22 7 chrX 141056373 141056508 -35917632 - ERVL LTR ERVL -1908 3856 3720 251 282 0 14 chrX 141056825 141056896 -35917244 - ERVL LTR ERVL -2264 2732 2663 451 301 70 24 chrX 141056932 141057202 -35916938 - ERVL LTR ERVL -2414 2582 2299 432 0 0 0 chrX 141057224 141057272 -35916868 + (TG)n Simple_repeat Simple_repeat 2 49 0 3447 248 52 54 chrX 141057279 141057404 -35916736 - L1ME1 LINE L1 -23 6143 6019 2285 130 0 0 chrX 141057404 141057712 -35916428 - AluSx SINE Alu -4 308 1 3447 248 52 54 chrX 141057712 141060190 -35913950 - L1ME1 LINE L1 -147 6019 3544 2174 148 23 9 chrX 141060242 141060791 -35913349 + THE1-int LTR MaLR 161 818 -762 582 177 0 0 chrX 141060792 141060905 -35913235 - L1MC/D LINE L1 -844 5500 5388 424 272 28 17 chrX 141060918 141061148 -35912992 + L1MC/D LINE L1 5198 5430 -776 17326 182 29 12 chrX 141061535 141065698 -35908442 + L1MA3 LINE L1 168 4525 -3199 2053 160 123 5 chrX 141065698 141066079 -35908061 + MSTA LTR MaLR 3 428 0 17326 182 29 12 chrX 141066079 141069334 -35904806 + L1MA3 LINE L1 4525 7724 0 503 238 98 32 chrX 141069343 141069658 -35904482 + L1MC4a LINE L1 2474 2809 -3337 722 284 16 3 chrX 141069675 141069978 -35904162 + L1MC4a LINE L1 2847 3153 -2993 304 221 47 23 chrX 141071079 141071165 -35902975 + L1MC4 LINE L1 6615 6702 -1340 533 140 0 10 chrX 141071761 141071861 -35902279 + (GGAA)n Simple_repeat Simple_repeat 2 100 0 182 167 62 0 chrX 141074640 141074688 -35899452 + GA-rich Low_complexity Low_complexity 6 56 0 791 226 89 4 chrX 141075514 141075749 -35898391 + L1MC3 LINE L1 7170 7424 -361 235 119 0 0 chrX 141075752 141075794 -35898346 + MER50 LTR ERV1 2 43 -691 2689 73 73 26 chrX 141075802 141076266 -35897874 + LTR21A LTR ERV1 1 486 -19 984 121 24 6 chrX 141076266 141076432 -35897708 + MER50 LTR ERV1 51 219 -515 * 1542 115 4 8 chrX 141076419 141076662 -35897478 + MER50 LTR ERV1 470 711 -23 1096 226 58 9 chrX 141076663 141076990 -35897150 + L1MC3 LINE L1 7423 7765 -20 1875 193 24 42 chrX 141076992 141077443 -35896697 + LTR47B LTR ERVL 1 443 0 335 332 4 37 chrX 141077480 141077748 -35896392 + L1MC4a LINE L1 3997 4255 -1891 267 154 19 0 chrX 141077759 141077811 -35896329 - MER67C LTR ERV1 -330 380 328 4817 144 17 36 chrX 141077815 141078885 -35895255 - L1PA15 LINE L1 -2 6163 5118 * 12440 148 13 15 chrX 141078866 141081869 -35892271 - L1PA11 LINE L1 -265 6560 3571 1658 278 53 59 chrX 141081882 141082845 -35891295 + L1P3 LINE L1 10 912 -4963 5937 97 30 13 chrX 141082849 141083940 -35890200 + L1PA10 LINE L1 5063 6168 0 4196 218 28 25 chrX 141083940 141085122 -35889018 - L1PA11 LINE L1 -4308 2489 1287 346 256 83 83 chrX 141085411 141085822 -35888318 + L1MC4a LINE L1 4573 4983 -1163 30 0 0 0 chrX 141085894 141085924 -35888216 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chrX 141086024 141086050 -35888090 + (TG)n Simple_repeat Simple_repeat 2 27 0 321 26 0 0 chrX 141086052 141086090 -35888050 + (GA)n Simple_repeat Simple_repeat 1 38 0 236 236 0 18 chrX 141086527 141086582 -35887558 + Tigger1 DNA MER2_type 2 55 -2363 991 74 0 0 chrX 141086584 141086705 -35887435 - AluSg/x SINE Alu -15 297 177 343 370 41 16 chrX 141088102 141088345 -35885795 + L2 LINE L2 2457 2705 -609 2052 99 19 10 chrX 141088356 141088669 -35885471 + L1PA13 LINE L1 5844 6159 -4 409 323 58 27 chrX 141088671 141088894 -35885246 - L1MC3 LINE L1 -1631 6154 5925 777 265 16 4 chrX 141088914 141089171 -35884969 - L1MC3 LINE L1 -2206 5579 5320 7263 35 12 0 chrX 141089233 141090206 -35883934 + L1PA4 LINE L1 5171 6154 -1 1281 223 35 50 chrX 141090390 141090453 -35883687 - L1MC2 LINE L1 -52 6292 6230 393 22 0 0 chrX 141090453 141090499 -35883641 + (CA)n Simple_repeat Simple_repeat 1 46 0 1281 223 35 50 chrX 141090499 141090896 -35883244 - L1MC2 LINE L1 -114 6230 5839 978 234 12 46 chrX 141090892 141091384 -35882756 - L1MC2 LINE L1 -743 5403 5066 * 313 325 92 65 chrX 141091465 141091865 -35882275 + L1MC4a LINE L1 5446 5856 -1952 2396 86 0 16 chrX 141091902 141092215 -35881925 - AluSq SINE Alu -5 308 1 1249 200 6 92 chrX 141092236 141092596 -35881544 - MLT1B LTR MaLR 0 390 62 212 173 27 27 chrX 141092693 141092768 -35881372 + (TA)n Simple_repeat Simple_repeat 2 76 0 262 239 88 57 chrX 141092993 141093108 -35881032 - MLT1J1 LTR MaLR 0 446 323 1844 185 23 21 chrX 141093108 141093497 -35880643 + MLT1B LTR MaLR 1 390 0 262 239 88 57 chrX 141093497 141093540 -35880600 - MLT1J1 LTR MaLR -123 323 283 21 36 0 0 chrX 141094215 141094243 -35879897 + AT_rich Low_complexity Low_complexity 1 28 0 663 296 49 13 chrX 141095186 141095423 -35878717 + MIR SINE MIR 16 261 -1 383 282 24 47 chrX 141096233 141096488 -35877652 - L1MC2 LINE L1 -2646 3500 3252 180 111 0 0 chrX 141096467 141096494 -35877646 + (T)n Simple_repeat Simple_repeat 1 27 0 * 4235 24 0 6 chrX 141096576 141097042 -35877098 - L1PA3 LINE L1 0 6155 5693 6057 17 0 10 chrX 141097043 141098066 -35876074 + L1PA3 LINE L1 4698 5708 -447 186 103 0 0 chrX 141099715 141099744 -35874396 + (GGA)n Simple_repeat Simple_repeat 2 30 0 184 402 17 0 chrX 141101970 141102087 -35872053 + L2 LINE L2 2587 2705 -609 472 272 44 36 chrX 141102112 141102342 -35871798 - L1MC3 LINE L1 -22 6144 5907 * 925 249 43 7 chrX 141102326 141102607 -35871533 - L1MC3 LINE L1 -2435 5607 5317 1307 257 25 27 chrX 141102721 141103125 -35871015 - L1MC2 LINE L1 -98 6246 5844 957 248 15 4 chrX 141103127 141103397 -35870743 - L1MC2 LINE L1 -2449 5546 5274 904 208 55 124 chrX 141103400 141103636 -35870504 - MLT1B LTR MaLR -67 323 117 10746 163 7 9 chrX 141103636 141106246 -35867894 - L1PA12 LINE L1 -1 6818 4213 904 208 55 124 chrX 141106246 141106356 -35867784 - MLT1B LTR MaLR -273 117 1 1441 209 7 17 chrX 141106796 141107097 -35867043 + MLT1B LTR MaLR 1 298 -92 257 197 16 0 chrX 141107097 141107158 -35866982 + L1MD3 LINE L1 7934 7995 0 235 111 0 111 chrX 141107771 141107825 -35866315 - MLT1A1 LTR MaLR -303 62 15 2056 107 0 34 chrX 141107905 141108243 -35865897 - AluSx SINE Alu 0 328 1 632 189 8 0 chrX 141108312 141108439 -35865701 - L1MC3 LINE L1 -1891 5894 5767 4485 154 11 4 chrX 141108439 141109189 -35864951 + L1MA3 LINE L1 5531 6288 -17 3859 253 15 12 chrX 141109269 141110391 -35863749 - L1PA12 LINE L1 -4374 2423 1286 256 281 102 58 chrX 141110491 141111177 -35862963 + L1M4 LINE L1 4340 5055 -1091 304 349 20 0 chrX 141112511 141112660 -35861480 + L2 LINE L2 2463 2614 -700 2144 111 23 0 chrX 141112708 141113014 -35861126 + L1PA13 LINE L1 5844 6156 -7 305 297 98 8 chrX 141113014 141113241 -35860899 - L1MD3 LINE L1 -1626 6159 5924 872 235 58 8 chrX 141113268 141113511 -35860629 - L1MD3 LINE L1 -2426 5569 5315 * 1669 232 27 47 chrX 141113504 141113617 -35860523 - L1MC2 LINE L1 0 6344 6230 303 104 0 0 chrX 141113617 141113665 -35860475 + (CA)n Simple_repeat Simple_repeat 1 48 0 1669 232 27 47 chrX 141113665 141114063 -35860077 - L1MC2 LINE L1 -114 6230 5843 941 239 41 25 chrX 141114064 141114212 -35859928 - L1MC2 LINE L1 -782 5364 5220 1724 169 78 36 chrX 141114212 141114572 -35859568 - THE1C LTR MaLR 0 375 1 941 239 41 25 chrX 141114572 141114917 -35859223 - L1MC2 LINE L1 -926 5220 5046 228 180 49 49 chrX 141115342 141115403 -35858737 + L1MC/D LINE L1 5817 5877 -1931 1003 225 79 85 chrX 141115414 141115792 -35858348 - MLT1B LTR MaLR -10 380 5 250 261 0 0 chrX 141115816 141115881 -35858259 + (TA)n Simple_repeat Simple_repeat 1 65 0 1746 216 29 13 chrX 141116229 141116613 -35857527 + MLT1B LTR MaLR 1 390 0 283 302 46 90 chrX 141118181 141118434 -35855706 + MIR SINE MIR 11 261 -1 2518 55 0 3 chrX 141119435 141119747 -35854393 + AluY SINE Alu 1 311 0 225 243 0 0 chrX 141121210 141121280 -35852860 + GA-rich Low_complexity Low_complexity 2 71 0 357 282 68 39 chrX 141122285 141122571 -35851569 - L1MC3 LINE L1 -1599 6186 5903 802 246 72 4 chrX 141122582 141122818 -35851322 - L1MC3 LINE L1 -2429 5566 5315 231 167 0 0 chrX 141122938 141122980 -35851160 + (CA)n Simple_repeat Simple_repeat 1 42 0 1445 211 53 40 chrX 141122980 141123379 -35850761 - L1MC2 LINE L1 -98 6246 5843 1283 206 16 34 chrX 141123380 141123865 -35850275 - L1MC2 LINE L1 -743 5403 5066 1417 192 3 86 chrX 141124286 141124645 -35849495 - MLT1B LTR MaLR 0 390 62 204 296 0 0 chrX 141124685 141124756 -35849384 + (TA)n Simple_repeat Simple_repeat 1 71 0 2056 158 33 41 chrX 141125102 141125495 -35848645 + MLT1B LTR MaLR 1 390 0 519 260 79 49 chrX 141127028 141127271 -35846869 + MIR SINE MIR 11 261 -1 398 265 48 45 chrX 141132171 141132407 -35841733 - L1MC3 LINE L1 -22 6144 5902 * 896 246 42 18 chrX 141132386 141132671 -35841469 - L1MC3 LINE L1 -2388 5607 5316 1183 261 53 28 chrX 141132785 141133179 -35840961 - L1MC2 LINE L1 -98 6246 5843 502 211 10 0 chrX 141133180 141133284 -35840856 - L1MC2 LINE L1 -2449 5546 5442 256 368 6 12 chrX 141133329 141133500 -35840640 + C-rich Low_complexity Low_complexity 4 173 0 475 270 14 14 chrX 141134746 141134894 -35839246 + L1MC3 LINE L1 7166 7313 -472 385 235 0 0 chrX 141134891 141134976 -35839164 + L1MC3 LINE L1 7698 7782 -3 * 250 287 21 11 chrX 141135020 141135114 -35839026 + L1 LINE L1 4021 4115 -2031 2579 163 29 30 chrX 141135508 141136243 -35837897 - L1MA3 LINE L1 0 7724 6922 4209 150 33 67 chrX 141136243 141137055 -35837085 + LTR1 LTR ERV1 1 785 0 2579 163 29 30 chrX 141137055 141137658 -35836482 - L1MA3 LINE L1 -802 6922 6320 1086 132 16 0 chrX 141137702 141137891 -35836249 - L1MA2 LINE L1 0 6304 6113 2516 176 10 8 chrX 141137906 141138389 -35835751 + L1 LINE L1 4412 4895 -1251 17776 171 47 20 chrX 141138394 141141698 -35832442 - L1MA3 LINE L1 -4160 3405 13 2648 164 24 5 chrX 141141749 141142169 -35831971 + MSTA LTR MaLR 1 428 0 297 266 55 75 chrX 141142170 141142463 -35831677 + L1M4 LINE L1 4541 4827 -1319 1111 247 15 0 chrX 141142579 141142838 -35831302 + L1PB4 LINE L1 5894 6156 0 577 325 29 12 chrX 141143516 141143756 -35830384 + L2 LINE L2 2462 2705 -609 581 230 73 65 chrX 141143778 141144026 -35830114 - L1ME1 LINE L1 -15 6431 6182 274 197 16 16 chrX 141144025 141144086 -35830054 - L1ME1 LINE L1 -2416 5859 5799 * 3007 147 33 4 chrX 141144086 141144604 -35829536 + L1MA4A LINE L1 5663 6195 -108 711 282 21 21 chrX 141144591 141144875 -35829265 - L1ME1 LINE L1 -1413 5013 4730 * 2427 200 50 43 chrX 141144889 141145593 -35828547 - L1M2 LINE L1 -743 5403 4824 792 249 17 13 chrX 141145601 141145789 -35828351 - L1ME1 LINE L1 -4739 1687 1496 473 0 18 0 chrX 141145789 141145846 -35828294 + (TC)n Simple_repeat Simple_repeat 1 58 0 792 249 17 13 chrX 141145846 141145894 -35828246 - L1ME1 LINE L1 -4930 1496 1450 756 297 0 10 chrX 141146247 141146442 -35827698 + MIR SINE MIR 1 193 -69 203 206 43 7 chrX 141146492 141146633 -35827507 + (TA)n Simple_repeat Simple_repeat 2 147 0 2479 38 0 3 chrX 141147205 141147498 -35826642 + AluY SINE Alu 1 292 -19 1570 218 37 15 chrX 141148010 141148465 -35825675 + Charlie4a DNA MER1_type 1 465 -43 279 312 79 47 chrX 141148491 141148706 -35825434 + MIR SINE MIR 23 244 -18 1074 122 142 19 chrX 141148739 141148944 -35825196 + MER30 DNA MER1_type 1 230 0 339 181 0 0 chrX 141149332 141149404 -35824736 + (TA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chrX 141149446 141149469 -35824671 + AT_rich Low_complexity Low_complexity 1 23 0 402 162 0 0 chrX 141149841 141149915 -35824225 + (TA)n Simple_repeat Simple_repeat 1 74 0 366 278 23 34 chrX 141150080 141150256 -35823884 - L1M4c LINE L1 -4186 2460 2287 3929 261 63 22 chrX 141150342 141152175 -35821965 - L1M4c LINE L1 -4543 2103 195 1680 129 54 72 chrX 141152188 141152561 -35821579 - LTR10A LTR ERV1 -61 548 183 531 245 7 0 chrX 141152669 141152820 -35821320 - L1M4c LINE L1 -6345 197 46 2970 154 0 2 chrX 141152822 141153327 -35820813 - MER41B LTR ERV1 0 635 132 254 61 0 0 chrX 141153331 141153364 -35820776 + LTR7 LTR ERV1 1 33 -417 13592 110 11 35 chrX 141153527 141155862 -35818278 + HERVH LTR ERV1 460 2987 -4726 5259 130 0 2 chrX 141155856 141156712 -35817428 + HERVH LTR ERV1 3140 3993 -3720 * 7544 124 1 1 chrX 141156765 141157932 -35816208 + HERVH LTR ERV1 3994 5149 -2564 1305 146 0 0 chrX 141157933 141158153 -35815987 + HERVH LTR ERV1 5600 5819 -1894 2330 71 50 19 chrX 141158153 141158531 -35815609 + HERVH LTR ERV1 7324 7713 0 1306 155 130 88 chrX 141158531 141158963 -35815177 + LTR7 LTR ERV1 1 450 0 753 153 8 0 chrX 141158963 141159094 -35815046 - MER41B LTR ERV1 -503 132 1 213 277 15 0 chrX 141160186 141160251 -35813889 + GA-rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chrX 141161005 141161028 -35813112 + AT_rich Low_complexity Low_complexity 1 23 0 321 350 8 25 chrX 141161671 141161791 -35812349 + L1ME3A LINE L1 6002 6119 -51 271 167 0 0 chrX 141161796 141161844 -35812296 - MSTC LTR MaLR 0 428 381 2615 103 17 6 chrX 141161844 141162204 -35811936 + THE1B LTR MaLR 1 364 0 7830 121 123 10 chrX 141162204 141163624 -35810516 + THE1B-int LTR MaLR 1 1580 0 2353 123 25 8 chrX 141163624 141163982 -35810158 + THE1B LTR MaLR 1 364 0 2193 175 0 23 chrX 141163982 141164376 -35809764 - MSTC LTR MaLR -43 385 1 43 0 0 0 chrX 141164450 141164493 -35809647 + AT_rich Low_complexity Low_complexity 1 43 0 208 309 0 0 chrX 141165366 141165421 -35808719 + L2 LINE L2 3217 3271 -1 268 350 82 32 chrX 141165984 141166184 -35807956 + L2 LINE L2 1935 2149 -1165 2043 95 7 11 chrX 141166184 141166491 -35807649 - AluSq SINE Alu 0 306 1 268 350 82 32 chrX 141166491 141166509 -35807631 + L2 LINE L2 2149 2165 -1149 210 337 172 45 chrX 141166720 141166987 -35807153 - L2 LINE L2 -2705 609 309 24 0 0 0 chrX 141167340 141167364 -35806776 + AT_rich Low_complexity Low_complexity 1 24 0 352 286 143 8 chrX 141167978 141168097 -35806043 - MIR SINE MIR -18 244 110 310 328 27 62 chrX 141168446 141168702 -35805438 - L1ME4a LINE L1 -227 5894 5648 306 181 28 28 chrX 141169134 141169206 -35804934 + L1MA9 LINE L1 1 72 -6958 1788 102 0 0 chrX 141169206 141169432 -35804708 + AluSc SINE Alu 1 226 -83 22 70 0 0 chrX 141169470 141169513 -35804627 + AT_rich Low_complexity Low_complexity 1 43 0 2203 257 69 88 chrX 141169607 141171309 -35802831 + L1MA9 LINE L1 144 1813 -5217 5083 215 32 40 chrX 141171321 141174089 -35800051 + L1MA9 LINE L1 4526 7157 -115 1803 217 55 10 chrX 141174194 141174688 -35799452 + L1ME1 LINE L1 5647 6162 -4 2125 181 14 11 chrX 141174719 141175155 -35798985 - L1PA16 LINE L1 -6 6160 5724 288 182 0 0 chrX 141175160 141175226 -35798914 - L1PA16 LINE L1 -474 5692 5627 * 6645 208 9 6 chrX 141175223 141177540 -35796600 - L1PA15-16 LINE L1 -5092 1757 1 233 259 0 0 chrX 141177573 141177631 -35796509 - MLT1K LTR MaLR -180 408 351 320 263 40 30 chrX 141177701 141177800 -35796340 - MLT1K LTR MaLR -357 231 132 1777 240 25 5 chrX 141177906 141178352 -35795788 - Charlie1a DNA MER1_type -1000 455 1 2568 95 22 8 chrX 141178626 141178985 -35795155 + THE1B LTR MaLR 1 364 0 21 0 0 0 chrX 141179098 141179119 -35795021 + AT_rich Low_complexity Low_complexity 1 21 0 451 263 48 88 chrX 141179316 141179544 -35794596 + MER102b DNA MER1_type 110 328 -13 2296 118 0 3 chrX 141179731 141180035 -35794105 - AluSx SINE Alu -9 303 1 891 132 0 0 chrX 141180078 141180214 -35793926 - L1MA2 LINE L1 0 6304 6169 196 314 55 122 chrX 141180870 141181182 -35792958 - L2 LINE L2 -87 3185 2895 266 313 0 12 chrX 141181353 141181433 -35792707 - L2 LINE L2 -575 2739 2661 488 291 81 36 chrX 141182208 141182431 -35791709 + MIR SINE MIR 3 235 -27 2544 270 45 52 chrX 141182489 141183248 -35790892 + L1MEc LINE L1 37 786 -5610 1461 209 43 0 chrX 141183248 141183525 -35790615 + AluJb SINE Alu 9 297 -15 2544 270 45 52 chrX 141183525 141183981 -35790159 + L1MEc LINE L1 786 1244 -5152 521 225 48 84 chrX 141184735 141184962 -35789178 + L1ME1 LINE L1 5812 6030 -136 663 199 0 0 chrX 141184967 141185103 -35789037 + L1MA10 LINE L1 6196 6331 -3 891 221 9 37 chrX 141185697 141185914 -35788226 + MLT1E2 LTR MaLR 4 214 -412 266 106 21 0 chrX 141186092 141186139 -35788001 + (TC)n Simple_repeat Simple_repeat 1 48 0 272 73 0 0 chrX 141186150 141186191 -35787949 - L1MB1 LINE L1 -16 6152 6112 197 83 28 0 chrX 141186507 141186543 -35787597 + (TG)n Simple_repeat Simple_repeat 2 38 0 1514 183 26 0 chrX 141186543 141186849 -35787291 - L1MB1 LINE L1 -33 6156 5843 1160 106 28 6 chrX 141186877 141187057 -35787083 - LTR2B LTR ERV1 -116 374 191 369 117 0 0 chrX 141187057 141187117 -35787023 + L1MB1 LINE L1 5780 5839 -350 270 323 115 0 chrX 141187505 141187635 -35786505 + MIR SINE MIR 6 150 -112 253 304 119 26 chrX 141187714 141187908 -35786232 - MIR SINE MIR -27 235 24 21 0 0 0 chrX 141188660 141188681 -35785459 + AT_rich Low_complexity Low_complexity 1 21 0 301 307 23 0 chrX 141189268 141189356 -35784784 + L1MC4 LINE L1 6614 6703 -1339 21 36 0 0 chrX 141189974 141190002 -35784138 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chrX 141190374 141190397 -35783743 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2414 153 2 0 chrX 141190633 141191037 -35783103 - Tigger1 DNA MER2_type 0 2418 2014 2803 130 33 35 chrX 141191044 141191535 -35782605 + LTR2B LTR ERV1 1 490 0 31307 188 9 13 chrX 141191535 141199382 -35774758 + HERVE LTR ERV1 1 7812 -1 2736 133 32 60 chrX 141199382 141199886 -35774254 + LTR2B LTR ERV1 1 490 0 11324 146 14 19 chrX 141199886 141201890 -35772250 - Tigger1 DNA MER2_type -424 1994 1 2594 46 0 3 chrX 141202262 141202567 -35771573 - AluY SINE Alu -7 304 1 705 248 45 35 chrX 141202778 141202980 -35771160 - MIR SINE MIR -52 210 7 351 325 53 0 chrX 141203295 141203409 -35770731 + L2 LINE L2 3137 3256 -16 418 243 55 0 chrX 141205172 141205298 -35768842 - MIR SINE MIR -63 145 13 333 62 0 0 chrX 141205421 141205469 -35768671 + (TG)n Simple_repeat Simple_repeat 2 49 0 444 257 29 22 chrX 141207856 141207992 -35766148 - MER5B DNA MER1_type -41 137 1 2252 82 0 0 chrX 141208406 141208688 -35765452 + AluSg SINE Alu 1 282 -28 196 30 61 0 chrX 141208694 141208727 -35765413 + (CAA)n Simple_repeat Simple_repeat 2 36 0 1302 269 20 3 chrX 141211048 141211405 -35762735 - MLT1A2 LTR MaLR -11 363 1 252 0 0 0 chrX 141211407 141211435 -35762705 + (T)n Simple_repeat Simple_repeat 1 28 0 7789 19 0 0 chrX 141211474 141212492 -35761648 - L1PA3 LINE L1 -3 6152 5135 2539 203 12 14 chrX 141212492 141213012 -35761128 + MLT2B3 LTR ERVL 4 413 -40 228 278 0 0 chrX 141213012 141213102 -35761038 - L1MC4 LINE L1 -1339 6703 6614 * 279 244 0 0 chrX 141213078 141213168 -35760972 + L1MC4 LINE L1 6614 6703 -1339 354 297 19 0 chrX 141213277 141213432 -35760708 + L1MB7 LINE L1 3415 3572 -2574 * 760 94 0 5 chrX 141213430 141213550 -35760590 - L1MA2 LINE L1 -223 5938 5830 1481 244 36 14 chrX 141213609 141214113 -35760027 + L1MB7 LINE L1 3622 4136 -2010 3238 188 37 62 chrX 141214115 141215265 -35758875 + L1MB7 LINE L1 5058 6176 -8 1986 134 33 13 chrX 141215327 141215632 -35758508 - AluSx SINE Alu -1 311 1 264 30 0 0 chrX 141215863 141215896 -35758244 + (TC)n Simple_repeat Simple_repeat 2 34 0 210 118 0 0 chrX 141215895 141215929 -35758211 + (TA)n Simple_repeat Simple_repeat 1 34 0 * 219 150 0 0 chrX 141217674 141217714 -35756426 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 22 56 0 0 chrX 141219351 141219387 -35754753 + GC_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chrX 141220166 141220194 -35753946 + AT_rich Low_complexity Low_complexity 1 28 0 1192 122 0 0 chrX 141220196 141220384 -35753756 - L1MA2 LINE L1 0 6304 6117 216 122 0 0 chrX 141221083 141221124 -35753016 + (TG)n Simple_repeat Simple_repeat 2 42 0 195 100 0 0 chrX 141221162 141221192 -35752948 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 1272 299 70 40 chrX 141221207 141221910 -35752230 - L2 LINE L2 -40 3273 2534 1237 265 0 21 chrX 141222350 141222675 -35751465 + L3b LINE CR1 1103 1420 -163 1519 77 5 5 chrX 141223265 141223487 -35750653 - pTR5 LTR ERV1 -2046 392 171 310 233 29 19 chrX 141223489 141223592 -35750548 - LTR30 LTR ERV1 -80 642 539 4870 118 76 68 chrX 141223592 141224720 -35749420 - pTR5 LTR ERV1 -418 2020 738 477 309 160 6 chrX 141224968 141225149 -35748991 + MIR SINE MIR 48 256 -6 685 309 49 71 chrX 141225150 141225516 -35748624 - L3 LINE CR1 -287 1290 933 260 369 102 5 chrX 141225763 141225969 -35748171 + L2 LINE L2 1761 1986 -1328 705 291 110 64 chrX 141226036 141226473 -35747667 - LTR33A LTR ERVL -65 458 2 442 330 155 25 chrX 141226827 141227194 -35746946 + L2 LINE L2 2402 2816 -498 215 440 14 0 chrX 141227294 141227435 -35746705 + L2 LINE L2 2918 3060 -212 1984 168 136 5 chrX 141227607 141228011 -35746129 - MSTB2 LTR MaLR 0 457 1 5172 223 45 82 chrX 141228011 141229726 -35744414 - MSTB2-int LTR MaLR 0 1651 1 2279 118 92 24 chrX 141229726 141230141 -35743999 - MSTB2 LTR MaLR 0 457 15 2286 107 30 33 chrX 141230655 141231020 -35743120 - THE1B LTR MaLR 0 364 1 323 311 36 61 chrX 141231056 141231252 -35742888 + MIR SINE MIR 32 222 -40 2138 93 0 10 chrX 141231299 141231624 -35742516 - AluSx SINE Alu 0 322 1 224 165 0 76 chrX 141232553 141232632 -35741508 + (TATAA)n Simple_repeat Simple_repeat 1 73 0 364 264 113 50 chrX 141233261 141233420 -35740720 + L1MC4 LINE L1 6535 6703 -1339 219 114 0 0 chrX 141233422 141233457 -35740683 + (GA)n Simple_repeat Simple_repeat 2 36 0 2041 114 26 0 chrX 141233457 141233729 -35740411 - AluSc SINE Alu -30 279 1 1263 282 50 25 chrX 141233746 141234108 -35740032 + L1ME2 LINE L1 2023 2374 -3841 7461 181 38 5 chrX 141234108 141236358 -35737782 + L1PA13 LINE L1 3884 6163 0 1263 282 50 25 chrX 141236358 141236816 -35737324 + L1ME2 LINE L1 2374 2822 -3393 233 237 193 0 chrX 141236836 141236971 -35737169 + L1ME2 LINE L1 3243 3403 -2812 943 287 137 18 chrX 141239345 141240030 -35734110 + L1ME2 LINE L1 4039 4818 -1397 780 212 61 28 chrX 141240030 141240242 -35733898 - MER20 DNA MER1_type 0 219 1 943 287 137 18 chrX 141240242 141240287 -35733853 + L1ME2 LINE L1 4818 4856 -1359 2517 50 0 3 chrX 141240301 141240604 -35733536 + AluY SINE Alu 1 302 -9 580 215 32 19 chrX 141240631 141240789 -35733351 + MER105 DNA DNA 8 167 -37 638 270 29 39 chrX 141240822 141240998 -35733142 + L1ME2 LINE L1 4879 5052 -1163 225 65 0 0 chrX 141240998 141241029 -35733111 + (CA)n Simple_repeat Simple_repeat 2 32 0 638 270 29 39 chrX 141241029 141241163 -35732977 + L1ME2 LINE L1 5052 5186 -1029 610 280 22 6 chrX 141241167 141241349 -35732791 + MLT1E LTR MaLR 1 185 -408 1172 244 32 35 chrX 141241397 141241708 -35732432 + MLT1E LTR MaLR 276 585 -8 1303 238 50 55 chrX 141241745 141242336 -35731804 + L1ME2 LINE L1 5193 5785 -448 239 88 0 0 chrX 141242336 141242370 -35731770 - HSMAR1 DNA Mariner -1253 34 1 1303 238 50 55 chrX 141242370 141242808 -35731332 + L1ME2 LINE L1 5785 6224 -9 253 81 0 0 chrX 141242806 141242843 -35731297 + L1P4 LINE L1 5767 5803 -362 * 311 335 42 30 chrX 141243072 141243239 -35730901 + MIR SINE MIR 21 189 -73 203 116 0 47 chrX 141243814 141243857 -35730283 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 2521 51 0 3 chrX 141244033 141244345 -35729795 + AluY SINE Alu 1 311 0 1328 76 16 11 chrX 141244829 141245014 -35729126 + AluSg/x SINE Alu 119 304 -5 295 306 24 40 chrX 141247411 141247535 -35726605 - MIR SINE MIR -107 155 34 182 191 21 0 chrX 141248222 141248269 -35725871 + CT-rich Low_complexity Low_complexity 1 48 0 1053 170 10 0 chrX 141248807 141249013 -35725127 - L1PA14 LINE L1 0 6161 5954 599 101 20 10 chrX 141249021 141249120 -35725020 - LTR5 LTR ERVK 0 969 870 12457 205 16 24 chrX 141249120 141254086 -35720054 - L1PA13 LINE L1 -1722 5075 149 2067 146 21 29 chrX 141254086 141254464 -35719676 + THE1C LTR MaLR 1 375 0 12457 205 16 24 chrX 141254464 141254612 -35719528 - L1PA13 LINE L1 -6648 149 1 588 360 26 11 chrX 141254623 141254890 -35719250 - L3 LINE CR1 -858 719 449 217 154 26 0 chrX 141256218 141256257 -35717883 + CT-rich Low_complexity Low_complexity 1 40 0 226 271 0 0 chrX 141256315 141256374 -35717766 + MER5B DNA MER1_type 116 174 -4 227 277 0 0 chrX 141256980 141257027 -35717113 - MIR SINE MIR -63 145 99 487 224 0 0 chrX 141257208 141257306 -35716834 - MER5A DNA MER1_type -83 106 9 509 310 27 21 chrX 141257948 141258135 -35716005 - MER5A DNA MER1_type -1 188 1 13909 206 27 37 chrX 141258403 141263234 -35710906 + L1PA16 LINE L1 5 4785 -2064 1407 209 3 24 chrX 141263244 141263531 -35710609 + AluJb SINE Alu 13 293 -19 2137 201 4 4 chrX 141263542 141264019 -35710121 + L1 LINE L1 4780 5256 -1593 41007 31 21 1 chrX 141264028 141270055 -35704085 + L1PA2 LINE L1 1 6150 -5 4807 146 55 5 chrX 141270062 141271628 -35702512 + L1PA16 LINE L1 5263 6868 -1 276 319 52 43 chrX 141271810 141272020 -35702120 - MLT1J LTR MaLR -299 212 1 1678 172 20 15 chrX 141272550 141272893 -35701247 - L1MC2 LINE L1 -13 6331 5987 189 0 0 0 chrX 141273084 141273105 -35701035 + (TTG)n Simple_repeat Simple_repeat 2 22 0 216 314 118 0 chrX 141273105 141273207 -35700933 - MIR SINE MIR -31 231 118 728 290 50 13 chrX 141273261 141273499 -35700641 + MER45B DNA AcHobo 1 247 -793 4097 192 32 54 chrX 141273526 141274104 -35700036 + MER45B DNA AcHobo 46 592 -989 2401 98 0 0 chrX 141274104 141274411 -35699729 + AluSg SINE Alu 1 307 -3 4097 192 32 54 chrX 141274411 141274850 -35699290 + MER45B DNA AcHobo 592 1039 -1 293 310 44 0 chrX 141275229 141275342 -35698798 - MIR SINE MIR -11 251 134 248 276 0 0 chrX 141275342 141275418 -35698722 + MER116 DNA Mariner 1 76 -4 417 357 0 0 chrX 141275423 141275549 -35698591 - MIR SINE MIR -128 134 9 23 33 0 0 chrX 141276260 141276290 -35697850 + AT_rich Low_complexity Low_complexity 1 30 0 336 389 64 22 chrX 141276437 141277034 -35697106 + L2 LINE L2 477 1098 -2216 187 259 32 139 chrX 141277062 141277313 -35696827 + L2 LINE L2 1230 1453 -1861 6168 70 6 48 chrX 141277337 141278199 -35695941 + LTR12 LTR ERV1 1 826 0 726 358 117 25 chrX 141278210 141278549 -35695591 + L2 LINE L2 1629 1935 -1379 270 0 0 0 chrX 141278549 141278579 -35695561 + (CAA)n Simple_repeat Simple_repeat 3 32 0 726 358 117 25 chrX 141278579 141279137 -35695003 + L2 LINE L2 1935 2609 -705 345 82 0 0 chrX 141279607 141279656 -35694484 + (TG)n Simple_repeat Simple_repeat 2 50 0 216 316 0 0 chrX 141280088 141280145 -35693995 - L2 LINE L2 -240 3032 2976 2404 77 3 0 chrX 141280265 141280562 -35693578 + AluSg SINE Alu 1 298 -12 245 289 22 33 chrX 141281024 141281114 -35693026 - MIR3 SINE MIR -14 194 106 2192 179 10 0 chrX 141281464 141281849 -35692291 + MLT1B LTR MaLR 2 390 0 648 301 23 14 chrX 141282145 141282361 -35691779 - MIR SINE MIR -37 225 8 188 290 58 0 chrX 141282848 141282917 -35691223 - L2 LINE L2 -49 3264 3192 255 291 103 0 chrX 141283669 141283786 -35690354 - MIR SINE MIR -34 228 100 1970 159 101 25 chrX 141283792 141284188 -35689952 + MSTB LTR MaLR 1 426 0 954 91 0 0 chrX 141284201 141284322 -35689818 - AluY SINE Alu -190 121 1 2091 319 29 25 chrX 141284322 141285397 -35688743 + L2 LINE L2 2234 3309 -4 372 301 15 45 chrX 141285687 141285820 -35688320 + MIR3 SINE MIR 53 181 -27 212 370 76 42 chrX 141285863 141286101 -35688039 + MIR SINE MIR 11 256 -6 290 280 30 20 chrX 141286634 141286734 -35687406 - MIR SINE MIR -112 150 50 1911 76 0 0 chrX 141287131 141287381 -35686759 - L1PA7 LINE L1 -3 6151 5902 244 379 32 16 chrX 141287457 141287581 -35686559 + MIR SINE MIR 18 143 -65 1790 187 17 35 chrX 141287588 141287633 -35686507 - MLT2C1 LTR ERVL -2 395 351 360 64 0 0 chrX 141287633 141287680 -35686460 + (CA)n Simple_repeat Simple_repeat 1 47 0 1790 187 17 35 chrX 141287680 141288036 -35686104 - MLT2C1 LTR ERVL -46 351 1 191 59 0 59 chrX 141288037 141288071 -35686069 + (ATG)n Simple_repeat Simple_repeat 3 34 0 1847 43 0 0 chrX 141288116 141288347 -35685793 - L1PA7 LINE L1 -20 6134 5904 218 246 35 0 chrX 141288366 141288423 -35685717 + L2 LINE L2 3255 3313 0 346 331 37 29 chrX 141288866 141289115 -35685025 + MIR SINE MIR 10 256 -6 299 298 112 19 chrX 141291074 141291235 -35682905 - MIR SINE MIR -6 256 81 218 213 21 0 chrX 141292713 141292760 -35681380 + (TG)n Simple_repeat Simple_repeat 1 48 0 312 252 101 8 chrX 141292797 141292916 -35681224 + L1ME4a LINE L1 5992 6121 0 192 179 0 0 chrX 141292993 141293032 -35681108 + (CA)n Simple_repeat Simple_repeat 1 39 0 1984 148 3 3 chrX 141293049 141293354 -35680786 + AluSx SINE Alu 1 305 -7 322 188 101 14 chrX 141293692 141293761 -35680379 + MER81 DNA DNA 40 114 0 1162 153 5 5 chrX 141293799 141294001 -35680139 - L1MC1 LINE L1 -1 6332 6131 1905 216 29 54 chrX 141294970 141295318 -35678822 - MER82 DNA MER2_type -31 622 290 2485 47 3 37 chrX 141295318 141295640 -35678500 + AluY SINE Alu 1 311 0 1905 216 29 54 chrX 141295640 141295813 -35678327 - MER82 DNA MER2_type -363 290 114 493 207 83 146 chrX 141295872 141296178 -35677962 - MER57A LTR ERV1 -88 314 3 393 181 24 12 chrX 141296192 141296275 -35677865 - MER82 DNA MER2_type -551 102 19 626 227 21 0 chrX 141296535 141296676 -35677464 + L1ME LINE L1 5453 5596 -568 394 380 85 9 chrX 141296871 141297189 -35676951 + L2 LINE L2 2446 2787 -527 28 29 0 0 chrX 141297344 141297379 -35676761 + AT_rich Low_complexity Low_complexity 1 35 0 522 335 12 0 chrX 141297793 141297963 -35676177 - MIR SINE MIR -60 202 31 985 169 15 35 chrX 141299133 141299334 -35674806 + MER3 DNA MER1_type 3 199 -10 241 245 0 0 chrX 141299589 141299642 -35674498 + L2 LINE L2 3261 3313 0 788 294 44 34 chrX 141299952 141300214 -35673926 + MIR SINE MIR 1 261 -1 218 259 49 62 chrX 141300207 141300288 -35673852 - L2 LINE L2 -51 3262 3183 * 2229 168 51 12 chrX 141300289 141300699 -35673441 + MSTB LTR MaLR 1 426 0 585 200 31 12 chrX 141300700 141300860 -35673280 - Looper DNA T2_type -13 1545 1383 2737 188 47 44 chrX 141300863 141301300 -35672840 - Looper DNA T2_type -600 958 517 2216 164 73 27 chrX 141301300 141301647 -35672493 - LOR1b LTR ERV1 -2 459 86 2384 86 0 0 chrX 141301647 141301939 -35672201 - AluSc SINE Alu -17 292 1 2216 164 73 27 chrX 141301939 141302030 -35672110 - LOR1b LTR ERV1 -375 86 1 2737 188 47 44 chrX 141302030 141302338 -35671802 - Looper DNA T2_type -1041 517 211 1253 223 4 8 chrX 141302358 141302605 -35671535 - AluJb SINE Alu -66 246 1 932 187 54 5 chrX 141302609 141302812 -35671328 - Looper DNA T2_type -1339 219 7 462 357 58 15 chrX 141302929 141303289 -35670851 - L2 LINE L2 -200 3072 2698 6275 29 0 0 chrX 141303329 141304064 -35670076 + L1PA3 LINE L1 5415 6149 -6 644 256 108 5 chrX 141304336 141304539 -35669601 - MER58A DNA MER1_type 0 224 1 308 276 67 37 chrX 141304836 141304970 -35669170 - HAL1b LINE L1 -457 891 754 1784 198 28 23 chrX 141305038 141305210 -35668930 + MSTD LTR MaLR 1 171 -225 2183 110 0 0 chrX 141305210 141305511 -35668629 + AluSx SINE Alu 1 301 -11 1784 198 28 23 chrX 141305511 141305732 -35668408 + MSTD LTR MaLR 171 396 0 5570 241 71 42 chrX 141305734 141305962 -35668178 + MSTD-int LTR MaLR 2 222 -1513 2097 120 16 3 chrX 141305962 141306244 -35667896 + AluSx SINE Alu 1 289 -23 787 67 17 0 chrX 141306244 141306363 -35667777 + (GA)n Simple_repeat Simple_repeat 2 122 0 2097 120 16 3 chrX 141306363 141306388 -35667752 + AluSx SINE Alu 289 312 0 5570 241 71 42 chrX 141306388 141307845 -35666295 + MSTD-int LTR MaLR 222 1735 0 1387 201 76 69 chrX 141307845 141308238 -35665902 + MSTD LTR MaLR 1 396 0 2445 50 0 7 chrX 141308601 141308901 -35665239 - AluY SINE Alu -13 298 1 401 258 46 62 chrX 141308917 141309111 -35665029 - HAL1 LINE L1 -918 1589 1399 22 0 0 0 chrX 141309134 141309156 -35664984 + AT_rich Low_complexity Low_complexity 1 22 0 649 251 123 100 chrX 141309237 141309907 -35664233 - L1ME3A LINE L1 -26 6144 5452 427 312 63 37 chrX 141310425 141310614 -35663526 - MIR SINE MIR -51 211 18 252 279 163 27 chrX 141310623 141310770 -35663370 - MIR SINE MIR -1 261 95 180 0 0 0 chrX 141310804 141310824 -35663316 + (A)n Simple_repeat Simple_repeat 1 20 0 265 295 16 0 chrX 141311189 141311250 -35662890 - MIR SINE MIR -118 90 29 42940 29 22 2 chrX 141311495 141317527 -35656613 - L1PA3 LINE L1 0 6155 2 185 232 14 0 chrX 141318080 141318149 -35655991 + (TA)n Simple_repeat Simple_repeat 2 71 0 2949 214 33 18 chrX 141318481 141319202 -35654938 - L1 LINE L1 -985 6182 5451 323 77 16 110 chrX 141319208 141319390 -35654750 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 7866 245 46 28 chrX 141319398 141320220 -35653920 - L1 LINE L1 -1724 5443 4637 1088 92 0 0 chrX 141320220 141320373 -35653767 - L1PA6 LINE L1 -6 6148 5996 7866 245 46 28 chrX 141320373 141321695 -35652445 - L1 LINE L1 -2530 4637 3340 2007 138 3 0 chrX 141321695 141322016 -35652124 - AluSx SINE Alu 0 312 1 7866 245 46 28 chrX 141322016 141322969 -35651171 - L1 LINE L1 -3827 3340 2533 2161 98 3 14 chrX 141322969 141323289 -35650851 + AluSp SINE Alu 1 317 0 7866 245 46 28 chrX 141323289 141324221 -35649919 - L1 LINE L1 -4634 2533 1619 2790 108 7 32 chrX 141325253 141325487 -35648653 - L1MA1 LINE L1 0 6302 6084 1595 174 10 39 chrX 141325487 141325792 -35648348 + AluJb SINE Alu 1 296 -16 2790 108 7 32 chrX 141325792 141326018 -35648122 - L1MA1 LINE L1 -218 6084 5854 24 0 0 0 chrX 141326321 141326345 -35647795 + AT_rich Low_complexity Low_complexity 1 24 0 181 259 0 86 chrX 141328213 141328271 -35645869 - L2 LINE L2 -1 3271 3219 375 400 6 12 chrX 141329263 141329433 -35644707 + L2 LINE L2 2891 3059 -213 2046 82 64 7 chrX 141329638 141329919 -35644221 + AluY SINE Alu 1 297 -14 189 147 0 0 chrX 141330206 141330240 -35643900 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 4649 104 78 3 chrX 141330244 141331002 -35643138 + L1PA8 LINE L1 2995 3809 -2337 784 40 0 0 chrX 141331000 141331099 -35643041 - L1P LINE L1 -921 5225 5127 * 10655 96 32 1 chrX 141331099 141333412 -35640728 + L1PA8 LINE L1 3819 6161 -11 189 147 0 0 chrX 141333529 141333563 -35640577 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 14522 163 21 22 chrX 141334671 141335017 -35639123 + L1MA1 LINE L1 1402 1747 -5974 288 0 0 0 chrX 141335017 141335049 -35639091 + (GA)n Simple_repeat Simple_repeat 1 32 0 14522 163 21 22 chrX 141335049 141336957 -35637183 + L1MA1 LINE L1 1747 3656 -4065 839 149 0 0 chrX 141336957 141337078 -35637062 + 5S rRNA rRNA 1 121 0 14522 163 21 22 chrX 141337078 141340171 -35633969 + L1MA1 LINE L1 3656 6759 -962 2260 115 0 3 chrX 141340171 141340483 -35633657 - AluSq SINE Alu -2 311 1 14522 163 21 22 chrX 141340483 141341445 -35632695 + L1MA1 LINE L1 6759 7721 0 15330 123 30 27 chrX 141341452 141344830 -35629310 + MER4B-int LTR ERV1 3324 6758 0 3375 136 19 6 chrX 141344837 141345432 -35628708 + MER4B LTR ERV1 7 774 -5 188 337 17 111 chrX 141345467 141345530 -35628610 - MIR3 SINE MIR -30 178 111 3010 170 90 15 chrX 141345530 141346129 -35628011 + LTR48B LTR ERV1 1 644 0 188 337 17 111 chrX 141346129 141346237 -35627903 - MIR3 SINE MIR -97 111 23 3863 65 2 0 chrX 141346556 141347050 -35627090 - L1PA7 LINE L1 -1 6153 5659 2846 198 14 5 chrX 141347377 141347943 -35626197 + MER34C LTR ERV1 7 577 -8 3395 163 16 42 chrX 141347950 141348620 -35625520 + MER39B LTR ERV1 1 653 0 207 114 0 0 chrX 141349230 141349265 -35624875 + (A)n Simple_repeat Simple_repeat 1 35 0 2709 75 95 7 chrX 141349280 141349692 -35624448 - LTR7 LTR ERV1 -2 448 1 2351 95 50 13 chrX 141349692 141350070 -35624070 - HERVH LTR ERV1 0 7713 7322 1478 118 0 5 chrX 141350068 141350289 -35623851 - HERVH LTR ERV1 -1894 5819 5600 * 4370 130 1 13 chrX 141350290 141350960 -35623180 - HERVH LTR ERV1 -2564 5149 4488 5409 125 4 2 chrX 141350969 141351811 -35622329 - HERVH LTR ERV1 -3731 3982 3140 * 14750 94 17 19 chrX 141351790 141353996 -35620144 - HERVH LTR ERV1 -4718 2995 793 2997 96 0 31 chrX 141354001 141354451 -35619689 - HERVH LTR ERV1 -7277 436 1 2582 80 97 12 chrX 141354453 141354866 -35619274 - LTR7 LTR ERV1 -2 448 1 299 241 0 0 chrX 141355004 141355061 -35619079 + MLT1E3 LTR MaLR 51 107 -486 3733 174 46 14 chrX 141355061 141355752 -35618388 - LTR39 LTR ERV1 0 783 71 1233 282 34 18 chrX 141355785 141356257 -35617883 + MLT1E3 LTR MaLR 100 621 -3 218 179 26 0 chrX 141356572 141356611 -35617529 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 40 0 0 chrX 141356611 141356636 -35617504 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 1103 176 85 108 chrX 141357054 141357515 -35616625 + LTR7 LTR ERV1 1 450 0 1613 179 126 18 chrX 141357559 141357949 -35616191 + MSTB1 LTR MaLR 1 432 0 378 236 57 14 chrX 141358109 141358249 -35615891 - L1M4 LINE L1 -780 5366 5221 229 209 30 15 chrX 141358537 141358604 -35615536 + (TA)n Simple_repeat Simple_repeat 1 68 0 28 48 0 0 chrX 141358693 141358735 -35615405 + AT_rich Low_complexity Low_complexity 1 42 0 2193 317 75 53 chrX 141359068 141359878 -35614262 + L1MA9 LINE L1 11 869 -5412 4139 57 0 0 chrX 141359878 141360391 -35613749 + L1PA8 LINE L1 5643 6155 -17 2193 317 75 53 chrX 141360391 141361068 -35613072 + L1MA9 LINE L1 869 1530 -4751 * 5790 195 57 6 chrX 141361067 141363406 -35610734 + L1MA9 LINE L1 4046 6516 0 2274 96 3 3 chrX 141364436 141364749 -35609391 + AluSp SINE Alu 1 313 0 408 290 30 24 chrX 141365870 141366046 -35608094 + MIR SINE MIR 62 236 -26 203 238 0 0 chrX 141366348 141366390 -35607750 - L2 LINE L2 -8 3305 3264 275 287 189 18 chrX 141366624 141366788 -35607352 - MIR SINE MIR -50 212 21 730 80 0 18 chrX 141367417 141367530 -35606610 + (TTTTC)n Simple_repeat Simple_repeat 3 113 0 282 56 0 0 chrX 141367831 141367867 -35606273 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 1027 149 35 6 chrX 141367874 141368048 -35606092 - AluJ SINE Alu 0 312 134 601 142 33 0 chrX 141368056 141368176 -35605964 + T-rich Low_complexity Low_complexity 5 128 0 975 150 36 6 chrX 141368199 141368366 -35605774 - AluJ SINE Alu -7 305 134 584 128 24 16 chrX 141368370 141368495 -35605645 + CT-rich Low_complexity Low_complexity 3 128 0 731 163 16 0 chrX 141368515 141368644 -35605496 - AluJ SINE Alu -169 133 3 508 285 38 6 chrX 141369203 141369361 -35604779 - MER117 DNA MER1_type -26 171 9 255 265 98 39 chrX 141369550 141369856 -35604284 - L1ME4a LINE L1 -1 6120 5797 607 285 35 18 chrX 141369875 141370001 -35604139 - L2 LINE L2 -1 3312 3179 195 100 0 0 chrX 141370001 141370031 -35604109 + (TG)n Simple_repeat Simple_repeat 2 31 0 607 285 35 18 chrX 141370031 141370132 -35604008 - L2 LINE L2 -134 3179 3081 297 303 99 53 chrX 141370211 141370363 -35603777 - L2 LINE L2 -405 2909 2751 2348 92 0 0 chrX 141370432 141370726 -35603414 - AluSx SINE Alu -18 294 1 3134 136 34 35 chrX 141370930 141371607 -35602533 - MER11B LTR ERVK -470 766 1 428 227 41 10 chrX 141371730 141371827 -35602313 - MIR SINE MIR -106 156 57 * 1649 292 61 49 chrX 141371824 141372746 -35601394 + L2 LINE L2 2244 3176 -137 2860 181 14 16 chrX 141372748 141373299 -35600841 - MER89 LTR ERV1 -9 550 1 428 321 8 0 chrX 141373315 141373446 -35600694 + L2 LINE L2 3180 3311 -2 414 0 0 0 chrX 141373533 141373579 -35600561 + (TA)n Simple_repeat Simple_repeat 1 46 0 180 306 116 58 chrX 141374158 141374279 -35599861 + L2 LINE L2 3145 3272 0 228 282 55 36 chrX 141374684 141374794 -35599346 + L1ME LINE L1 5547 5658 -463 1077 202 5 10 chrX 141376575 141376778 -35597362 + AluJb SINE Alu 85 286 -26 21 36 0 0 chrX 141376778 141376806 -35597334 + AT_rich Low_complexity Low_complexity 1 28 0 401 173 173 31 chrX 141377389 141377551 -35596589 + MER53 DNA DNA 4 188 -1 620 309 44 33 chrX 141377573 141377845 -35596295 + LTR16C LTR ERVL 200 474 -17 302 391 0 0 chrX 141377914 141378029 -35596111 - MIR SINE MIR -65 143 29 2148 236 36 78 chrX 141378185 141378632 -35595508 - HAL1b LINE L1 -63 1285 821 2311 95 0 0 chrX 141378632 141378926 -35595214 - AluSg SINE Alu -16 294 1 2148 236 36 78 chrX 141378926 141379573 -35594567 - HAL1b LINE L1 -527 821 237 394 303 7 40 chrX 141379573 141379725 -35594415 + L2 LINE L2 3164 3310 -3 2291 216 4 0 chrX 141380214 141380687 -35593453 - L1MA6 LINE L1 -24 6276 5802 2221 185 15 13 chrX 141380688 141381143 -35592997 + L1 LINE L1 4720 5175 -971 501 149 8 16 chrX 141381144 141381265 -35592875 + (TA)n Simple_repeat Simple_repeat 2 121 0 288 0 0 0 chrX 141381265 141381297 -35592843 + (GA)n Simple_repeat Simple_repeat 2 33 0 531 168 0 56 chrX 141381298 141381423 -35592717 + L1 LINE L1 5200 5317 -829 291 114 0 0 chrX 141382009 141382053 -35592087 + (A)n Simple_repeat Simple_repeat 1 44 0 268 271 40 73 chrX 141383254 141383405 -35590735 - MIR3 SINE MIR -5 203 58 1600 117 29 12 chrX 141383626 141383910 -35590230 - AluSg SINE Alu 0 327 40 213 39 0 0 chrX 141384346 141384372 -35589768 + (CAA)n Simple_repeat Simple_repeat 2 27 0 499 319 79 38 chrX 141385215 141385557 -35588583 + L3 LINE CR1 1140 1495 -82 30 0 0 0 chrX 141385588 141385618 -35588522 + AT_rich Low_complexity Low_complexity 1 30 0 1028 271 34 60 chrX 141387037 141387506 -35586634 - LTR16A1 LTR ERVL 0 457 1 1336 206 61 71 chrX 141387651 141388045 -35586095 - MLT1B LTR MaLR 0 390 1 580 333 41 33 chrX 141388514 141388757 -35585383 - MIR SINE MIR -6 256 12 382 272 8 56 chrX 141388853 141388978 -35585162 - L2 LINE L2 0 3313 3195 585 123 0 0 chrX 141388988 141389094 -35585046 + (TAGA)n Simple_repeat Simple_repeat 1 106 0 427 350 75 31 chrX 141390178 141390404 -35583736 - MIR SINE MIR -15 247 12 650 350 23 0 chrX 141390935 141391155 -35582985 + MIR SINE MIR 1 225 -37 3622 222 63 23 chrX 141391186 141393052 -35581088 + L1MA9 LINE L1 4342 6274 -38 325 312 46 9 chrX 141393059 141393168 -35580972 - L2 LINE L2 -17 3296 3184 241 293 0 0 chrX 141393178 141393236 -35580904 + (CAT)n Simple_repeat Simple_repeat 2 59 0 429 20 0 0 chrX 141394484 141394534 -35579606 + (TA)n Simple_repeat Simple_repeat 2 51 0 2206 102 0 14 chrX 141394534 141394829 -35579311 - AluSx SINE Alu -21 291 1 666 333 149 20 chrX 141394892 141395407 -35578733 - L2 LINE L2 -6 3307 2745 447 335 28 6 chrX 141396118 141396300 -35577840 - L2 LINE L2 -1401 1913 1728 207 289 114 54 chrX 141396298 141396447 -35577693 - MIR SINE MIR -99 163 6 * 941 92 56 82 chrX 141396626 141396821 -35577319 + L1MB3 LINE L1 5992 6181 -2 1436 210 36 6 chrX 141397440 141397769 -35576371 + L1MA9 LINE L1 5937 6275 -37 * 1511 166 25 121 chrX 141397764 141398222 -35575918 + L1MD1 LINE L1 5810 6227 -15 182 219 0 0 chrX 141399290 141399331 -35574809 - L2 LINE L2 0 3313 3273 1447 189 14 0 chrX 141399402 141399677 -35574463 + L1MB5 LINE L1 5887 6165 -9 339 261 45 27 chrX 141399696 141399807 -35574333 + MIR SINE MIR 57 169 -93 797 220 12 12 chrX 141402954 141403122 -35571018 + MER5A DNA MER1_type 21 188 -1 521 293 24 24 chrX 141403258 141403425 -35570715 + MIR3 SINE MIR 35 201 -7 449 321 54 23 chrX 141403791 141404012 -35570128 - MIR SINE MIR -24 238 11 2064 135 52 19 chrX 141404040 141404403 -35569737 + THE1C LTR MaLR 1 375 0 418 275 5 83 chrX 141405393 141405458 -35568682 - MER5B DNA MER1_type 0 178 110 2593 37 0 0 chrX 141405458 141405756 -35568384 + AluY SINE Alu 1 298 -13 418 275 5 83 chrX 141405756 141405883 -35568257 - MER5B DNA MER1_type -68 110 1 22 70 0 0 chrX 141406074 141406117 -35568023 + AT_rich Low_complexity Low_complexity 1 43 0 2247 146 23 15 chrX 141406153 141406550 -35567590 + L1PA10 LINE L1 5769 6168 0 216 97 0 0 chrX 141406663 141406694 -35567446 + (TTA)n Simple_repeat Simple_repeat 3 33 0 246 241 0 0 chrX 141406708 141406766 -35567374 - L1MCa LINE L1 -4363 2063 2006 596 295 103 26 chrX 141407064 141407342 -35566798 + LTR33A LTR ERVL 59 340 -183 208 394 10 0 chrX 141407764 141407863 -35566277 + L2 LINE L2 3214 3313 0 264 285 103 93 chrX 141408220 141408637 -35565503 + LTR33 LTR ERVL 99 519 -2 24 32 0 0 chrX 141408707 141408738 -35565402 + AT_rich Low_complexity Low_complexity 1 31 0 2067 125 0 0 chrX 141409001 141409290 -35564850 + AluSc SINE Alu 1 289 -20 29 0 0 0 chrX 141409695 141409724 -35564416 + AT_rich Low_complexity Low_complexity 1 29 0 2165 138 19 26 chrX 141410489 141410867 -35563273 + THE1C LTR MaLR 1 375 0 3370 145 93 7 chrX 141410867 141411466 -35562674 + THE1C-int LTR MaLR 1 651 -929 1817 110 10 28 chrX 141411465 141411756 -35562384 + THE1C-int LTR MaLR 1295 1580 0 * 2285 126 13 16 chrX 141411758 141412132 -35562008 + THE1C LTR MaLR 3 375 0 341 309 79 34 chrX 141413667 141413845 -35560295 - MIR SINE MIR 0 262 77 6713 69 9 2 chrX 141413992 141414997 -35559143 + L1PA7 LINE L1 5143 6153 -1 471 35 0 0 chrX 141415505 141415562 -35558578 + (TG)n Simple_repeat Simple_repeat 2 58 0 1816 123 80 37 chrX 141416065 141416414 -35557726 + THE1B LTR MaLR 1 364 0 11080 97 28 3 chrX 141416414 141417949 -35556191 + THE1B-int LTR MaLR 1 1573 -7 2098 157 8 22 chrX 141417956 141418325 -35555815 + THE1B LTR MaLR 1 364 0 256 258 43 124 chrX 141418358 141418544 -35555596 + L2 LINE L2 2980 3150 -163 2873 138 16 14 chrX 141418545 141419039 -35555101 + L1MC1 LINE L1 5830 6324 -9 233 302 52 26 chrX 141419095 141419211 -35554929 - MER20B DNA MER1_type -663 120 2 23 0 0 0 chrX 141419427 141419450 -35554690 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 141420131 141420158 -35553982 + AT_rich Low_complexity Low_complexity 1 27 0 255 250 28 28 chrX 141420346 141420418 -35553722 + MIR3 SINE MIR 109 180 -28 426 266 224 0 chrX 141421084 141421227 -35552913 + MER5A DNA MER1_type 4 178 -11 401 263 112 66 chrX 141422028 141422287 -35551853 + MLT1I LTR MaLR 100 370 -39 2551 49 7 0 chrX 141422317 141422624 -35551516 + AluY SINE Alu 3 311 0 742 224 66 6 chrX 141422758 141422941 -35551199 + MLT1E LTR MaLR 386 579 -14 275 307 70 18 chrX 141423182 141423296 -35550844 + L2 LINE L2 3182 3301 -12 476 244 59 98 chrX 141424251 141424538 -35549602 - L2 LINE L2 -76 3237 2962 934 266 9 5 chrX 141424542 141424764 -35549376 - L2 LINE L2 -575 2739 2517 514 246 16 16 chrX 141424780 141424906 -35549234 + L2 LINE L2 3188 3313 0 * 1729 293 102 18 chrX 141424897 141425632 -35548508 - L2 LINE L2 -773 2541 1745 200 333 0 33 chrX 141425623 141425713 -35548427 + MIR SINE MIR 137 223 -39 * 227 401 117 6 chrX 141425848 141426010 -35548130 + L2 LINE L2 3084 3263 -9 339 254 127 37 chrX 141427113 141427247 -35546893 + L1MC5 LINE L1 7763 7908 -53 180 348 87 26 chrX 141427312 141427427 -35546713 - L2 LINE L2 -17 3296 3175 380 278 26 35 chrX 141427498 141427613 -35546527 - MIR SINE MIR -137 125 12 216 67 0 0 chrX 141428409 141428439 -35545701 + (CA)n Simple_repeat Simple_repeat 1 30 0 3514 271 65 40 chrX 141428798 141428849 -35545291 - L1ME2 LINE L1 -39 6059 6011 462 268 86 25 chrX 141428849 141429047 -35545093 + MER63A DNA MER1_type 1 210 0 3514 271 65 40 chrX 141429047 141430537 -35543603 - L1ME2 LINE L1 -87 6011 4560 4005 33 14 2 chrX 141430537 141431025 -35543115 + L1PA3 LINE L1 5659 6152 -3 3514 271 65 40 chrX 141431025 141431779 -35542361 - L1ME2 LINE L1 -1538 4560 3826 1636 137 60 0 chrX 141431779 141432082 -35542058 + AluSg SINE Alu 18 335 0 3514 271 65 40 chrX 141432082 141432809 -35541331 - L1ME2 LINE L1 -2272 3826 2951 412 212 0 12 chrX 141432815 141432900 -35541240 + MER20 DNA MER1_type 1 84 -135 * 929 250 39 17 chrX 141432888 141433120 -35541020 - MLT1E LTR MaLR -347 246 10 2084 192 48 12 chrX 141433223 141433635 -35540505 + MSTA LTR MaLR 1 427 -1 1361 284 97 25 chrX 141433652 141434488 -35539652 - L1ME2 LINE L1 -4241 2020 1125 342 259 89 57 chrX 141434506 141434664 -35539476 - L1ME2 LINE L1 -5025 1045 883 512 168 0 0 chrX 141434678 141434773 -35539367 - L1MA5 LINE L1 -5 6295 6201 7119 58 0 0 chrX 141434788 141435678 -35538462 + L1PA7 LINE L1 5254 6143 -11 226 117 67 83 chrX 141435719 141435779 -35538361 - MLT1E2 LTR MaLR -566 60 2 204 338 167 9 chrX 141435784 141435994 -35538146 - MIR SINE MIR -12 250 8 991 279 48 71 chrX 141436732 141437309 -35536831 + L1MCb LINE L1 1 564 -5481 225 250 0 0 chrX 141437414 141437462 -35536678 + L1MCb LINE L1 783 830 -5734 222 91 0 0 chrX 141437643 141437676 -35536464 + (TG)n Simple_repeat Simple_repeat 1 33 0 377 281 28 11 chrX 141437894 141438072 -35536068 - L1M4 LINE L1 -1473 4673 4493 28 71 0 0 chrX 141438171 141438227 -35535913 + AT_rich Low_complexity Low_complexity 1 56 0 271 299 41 10 chrX 141438432 141438529 -35535611 - MIR SINE MIR 0 262 163 391 356 33 11 chrX 141438617 141438797 -35535343 + MER5A DNA MER1_type 5 188 -1 1682 240 47 12 chrX 141439104 141439708 -35534432 - L1MCa LINE L1 -4946 1799 972 249 163 0 0 chrX 141439720 141439769 -35534371 + (TG)n Simple_repeat Simple_repeat 1 49 0 1576 264 10 5 chrX 141439779 141440184 -35533956 - L1MCa LINE L1 -5070 975 569 486 315 36 18 chrX 141440622 141440844 -35533296 + HERVL LTR ERVL 4735 4960 -694 915 346 52 7 chrX 141441370 141441789 -35532351 + LTR16A LTR ERVL 8 445 -5 5877 45 5 35 chrX 141442290 141443097 -35531043 + L1PA4 LINE L1 5373 6155 0 378 323 49 45 chrX 141443695 141443918 -35530222 + MIR SINE MIR 2 225 -37 227 111 0 22 chrX 141444629 141444674 -35529466 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 374 289 23 23 chrX 141445209 141445337 -35528803 - MER94 DNA DNA -2 132 5 275 339 73 62 chrX 141445362 141445715 -35528425 + L2 LINE L2 2471 2830 -484 2443 148 23 28 chrX 141445715 141446149 -35527991 + MSTB1 LTR MaLR 1 432 0 275 339 73 62 chrX 141446149 141446179 -35527961 + L2 LINE L2 2830 2858 -456 335 217 24 0 chrX 141446377 141446460 -35527680 - L1MA8 LINE L1 -4 6287 6203 260 220 37 9 chrX 141446460 141446569 -35527571 + (TA)n Simple_repeat Simple_repeat 1 112 0 270 159 0 0 chrX 141446570 141446614 -35527526 - L1MA8 LINE L1 -45 6246 6203 269 258 25 19 chrX 141446614 141446773 -35527367 + (TA)n Simple_repeat Simple_repeat 1 160 0 312 114 0 0 chrX 141446774 141446818 -35527322 + L1MA8 LINE L1 6203 6246 -45 295 197 42 63 chrX 141446836 141446978 -35527162 - L1MA8 LINE L1 -64 6227 6089 293 209 229 9 chrX 141448214 141448319 -35525821 - MER5A DNA MER1_type -1 188 61 42800 31 22 3 chrX 141448326 141448352 -35525788 - L1HS LINE L1 0 6155 6131 250 45 45 0 chrX 141448352 141448396 -35525744 + (TTTTA)n Simple_repeat Simple_repeat 4 49 0 42800 31 22 3 chrX 141448396 141454402 -35519738 - L1HS LINE L1 -24 6131 4 450 113 0 0 chrX 141454408 141454470 -35519670 - MER5A DNA MER1_type -119 70 9 385 228 121 35 chrX 141455169 141455363 -35518777 - MLT1G LTR MaLR 0 590 402 893 239 16 77 chrX 141455647 141455894 -35518246 - MLT1G LTR MaLR -310 280 49 182 330 93 34 chrX 141456224 141456342 -35517798 - MIR SINE MIR -68 140 16 189 74 0 0 chrX 141456846 141456873 -35517267 + (CTA)n Simple_repeat Simple_repeat 1 27 0 207 246 105 0 chrX 141457356 141457413 -35516727 - MIR SINE MIR -98 164 102 561 88 0 0 chrX 141457577 141457657 -35516483 + (GA)n Simple_repeat Simple_repeat 1 80 0 444 308 21 0 chrX 141458522 141458674 -35515466 - MIR SINE MIR -65 143 37 38 39 0 0 chrX 141458807 141458859 -35515281 + AT_rich Low_complexity Low_complexity 1 52 0 379 354 179 13 chrX 141459992 141460294 -35513846 - L2 LINE L2 0 3272 2921 432 293 52 42 chrX 141460845 141461036 -35513104 + MIR SINE MIR 8 200 -62 960 234 9 18 chrX 141461172 141461398 -35512742 - MER58A DNA MER1_type 0 224 1 191 329 14 0 chrX 141462111 141462184 -35511956 - MIR SINE MIR -8 254 181 6211 152 16 4 chrX 141462216 141463179 -35510961 - L1PB1 LINE L1 0 6151 5159 378 0 0 0 chrX 141463179 141463221 -35510919 + (TTA)n Simple_repeat Simple_repeat 2 43 0 6211 152 16 4 chrX 141463221 141463912 -35510228 - L1PB1 LINE L1 -992 5159 4478 5668 232 10 4 chrX 141463915 141465291 -35508849 + L1 LINE L1 3009 4392 -1754 6379 50 0 0 chrX 141465315 141466094 -35508046 - L1PA5 LINE L1 0 6154 5376 195 339 0 15 chrX 141466094 141466159 -35507981 - MIR SINE MIR -135 127 64 4474 98 3 2 chrX 141466377 141467010 -35507130 - L1PA7 LINE L1 -1501 4645 4012 6973 58 2 2 chrX 141467010 141468496 -35505644 + L1PA7 LINE L1 4665 6150 -4 1296 203 0 30 chrX 141468900 141469136 -35505004 + AluJo SINE Alu 1 229 -83 213 94 0 0 chrX 141469157 141469189 -35504951 + (GA)n Simple_repeat Simple_repeat 2 33 0 2512 157 18 23 chrX 141469374 141469808 -35504332 - MSTB1 LTR MaLR 0 432 1 23 0 0 0 chrX 141470739 141470762 -35503378 + AT_rich Low_complexity Low_complexity 1 23 0 1335 210 113 9 chrX 141471424 141471753 -35502387 + MLT1A1 LTR MaLR 3 365 0 198 191 0 0 chrX 141473105 141473147 -35500993 + (CGTG)n Simple_repeat Simple_repeat 2 43 0 1859 94 24 17 chrX 141473813 141474110 -35500030 - L1MA2 LINE L1 0 6304 6006 500 305 66 46 chrX 141474476 141474857 -35499283 + L2 LINE L2 2662 3064 -208 189 256 0 0 chrX 141474951 141474990 -35499150 - MIR SINE MIR -11 251 213 207 208 19 0 chrX 141474998 141475051 -35499089 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 202 271 0 0 chrX 141475256 141475304 -35498836 - MIR SINE MIR 0 262 215 284 322 52 0 chrX 141475371 141475486 -35498654 - MIR SINE MIR -52 210 90 503 160 55 72 chrX 141475698 141475782 -35498358 - MER53 DNA DNA 0 189 105 2323 68 0 23 chrX 141475782 141476090 -35498050 + AluY SINE Alu 1 301 -10 503 160 55 72 chrX 141476090 141476186 -35497954 - MER53 DNA DNA -84 105 12 297 285 44 57 chrX 141476973 141477131 -35497009 + MIR SINE MIR 56 211 -51 21 0 0 0 chrX 141477301 141477322 -35496818 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chrX 141477758 141477791 -35496349 + AT_rich Low_complexity Low_complexity 1 33 0 205 222 22 0 chrX 141478242 141478287 -35495853 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 528 286 32 38 chrX 141479237 141479422 -35494718 + L2 LINE L2 1765 1948 -1366 227 240 0 0 chrX 141479425 141479475 -35494665 - L2 LINE L2 -1 3312 3263 215 336 28 9 chrX 141479602 141479709 -35494431 + L2 LINE L2 2012 2120 -1194 311 226 94 75 chrX 141479727 141479833 -35494307 - MER94 DNA DNA -21 113 6 887 319 172 16 chrX 141479843 141480464 -35493676 + L2 LINE L2 2183 2900 -414 284 261 84 70 chrX 141480604 141480746 -35493394 + L2 LINE L2 3155 3298 -15 226 226 155 12 chrX 141480942 141481026 -35493114 + MLT1J1 LTR MaLR 346 441 -5 729 213 39 16 chrX 141481498 141481692 -35492448 + L1MA4 LINE L1 5852 6049 -102 279 146 0 0 chrX 141481688 141481736 -35492404 + L1MB2 LINE L1 6099 6146 -25 * 447 354 43 6 chrX 141482502 141482663 -35491477 + L2 LINE L2 3102 3268 -4 22 0 0 0 chrX 141485527 141485549 -35488591 + AT_rich Low_complexity Low_complexity 1 22 0 1096 344 49 17 chrX 141485626 141486097 -35488043 - L2 LINE L2 -20 3293 2808 1097 142 42 0 chrX 141486621 141486833 -35487307 + L1MA9 LINE L1 6088 6308 -4 29 60 0 0 chrX 141487065 141487115 -35487025 + AT_rich Low_complexity Low_complexity 1 50 0 1776 126 18 62 chrX 141487228 141487569 -35486571 + MER11B LTR ERVK 911 1236 0 32 26 0 0 chrX 141487669 141487708 -35486432 + AT_rich Low_complexity Low_complexity 1 39 0 11028 169 17 21 chrX 141488072 141489588 -35484552 - L1MA2 LINE L1 -2 7721 6199 3302 67 4 9 chrX 141489588 141490038 -35484102 + LTR7 LTR ERV1 1 448 -2 11028 169 17 21 chrX 141490038 141491886 -35482254 - L1MA2 LINE L1 -1524 6199 4377 8841 221 68 7 chrX 141491871 141493729 -35480411 - L1MA2 LINE L1 -5576 1989 18 * 494 291 84 0 chrX 141493828 141494007 -35480133 - MIR SINE MIR -16 246 53 2054 151 97 3 chrX 141494338 141494729 -35479411 - MSTA LTR MaLR 0 428 1 21 36 0 0 chrX 141494994 141495022 -35479118 + AT_rich Low_complexity Low_complexity 1 28 0 894 189 0 0 chrX 141495025 141495205 -35478935 + CT-rich Low_complexity Low_complexity 1 180 0 327 49 0 0 chrX 141495207 141495248 -35478892 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 842 144 0 0 chrX 141495248 141495387 -35478753 - L1PB1 LINE L1 -1 6150 6012 234 291 82 55 chrX 141496034 141496144 -35477996 + L2 LINE L2 3005 3117 -155 24 32 0 0 chrX 141496182 141496213 -35477927 + AT_rich Low_complexity Low_complexity 1 31 0 695 293 68 24 chrX 141496312 141496561 -35477579 - MIR SINE MIR 0 262 3 5135 180 2 6 chrX 141496867 141497710 -35476430 + L1PB1 LINE L1 2 841 -6740 4257 129 18 1 chrX 141497707 141498374 -35475766 + L1PB1 LINE L1 2107 2784 -4797 * 7303 184 31 9 chrX 141498371 141500247 -35473893 + L1PB1 LINE L1 5008 6951 -638 387 0 0 0 chrX 141500247 141500290 -35473850 + (TAA)n Simple_repeat Simple_repeat 3 45 0 7303 184 31 9 chrX 141500290 141500939 -35473201 + L1PB1 LINE L1 6951 7584 -5 10218 166 48 44 chrX 141500964 141503083 -35471057 - L1M1 LINE L1 -4257 3308 1181 2064 149 33 30 chrX 141503083 141503446 -35470694 + THE1B LTR MaLR 1 364 0 9940 131 10 2 chrX 141503446 141504893 -35469247 + THE1B-int LTR MaLR 1 1458 -122 4633 52 23 12 chrX 141504893 141505585 -35468555 + MER11A LTR ERVK 424 1263 -3 2056 133 42 31 chrX 141505585 141505939 -35468201 + THE1B LTR MaLR 5 362 -2 5279 209 34 16 chrX 141505958 141506002 -35468138 - L1M1 LINE L1 -6397 1168 1126 2132 114 46 60 chrX 141506002 141506371 -35467769 + THE1B LTR MaLR 1 364 0 5279 209 34 16 chrX 141506371 141507462 -35466678 - L1M1 LINE L1 -6439 1126 13 2811 253 37 39 chrX 141507462 141508586 -35465554 + L1M4c LINE L1 908 2119 -4265 258 140 35 0 chrX 141508855 141508912 -35465228 + L1MC4 LINE L1 6647 6705 -1337 23 78 0 0 chrX 141509091 141509142 -35464998 + AT_rich Low_complexity Low_complexity 1 51 0 430 344 41 82 chrX 141509678 141510277 -35463863 - L2 LINE L2 -5 3267 2700 354 378 62 8 chrX 141510380 141510750 -35463390 - L2 LINE L2 -815 2499 2110 512 326 99 40 chrX 141511027 141511308 -35462832 - L1ME LINE L1 -363 5799 5483 6665 32 0 10 chrX 141511308 141512117 -35462023 + L1PA4 LINE L1 5355 6155 0 512 326 99 40 chrX 141512117 141512258 -35461882 - L1ME LINE L1 -679 5483 5352 254 225 28 14 chrX 141512289 141512360 -35461780 - L1ME LINE L1 -868 5278 5207 353 290 0 0 chrX 141512592 141512699 -35461441 - L1ME LINE L1 -1300 4846 4740 307 220 100 20 chrX 141512951 141513051 -35461089 - MIR SINE MIR -23 239 132 2510 54 0 0 chrX 141513051 141513349 -35460791 - AluY SINE Alu -13 298 1 204 333 0 61 chrX 141514431 141514530 -35459610 + MER5A DNA MER1_type 1 93 -96 285 51 0 0 chrX 141515181 141515220 -35458920 + (TG)n Simple_repeat Simple_repeat 1 39 0 4215 29 0 17 chrX 141515758 141516280 -35457860 - L1PA4 LINE L1 0 6155 5643 299 182 26 52 chrX 141516761 141516838 -35457302 + L2 LINE L2 3239 3313 0 1016 202 60 38 chrX 141520461 141520778 -35453362 + MER33 DNA MER1_type 1 324 0 594 264 60 12 chrX 141523027 141523194 -35450946 - MIR SINE MIR -70 192 18 784 287 0 34 chrX 141524544 141524781 -35449359 + MIR SINE MIR 15 243 -19 399 336 8 8 chrX 141524888 141525007 -35449133 + L2 LINE L2 3154 3272 0 798 274 129 77 chrX 141525589 141526071 -35448069 + L1ME LINE L1 5312 5819 -359 227 324 83 19 chrX 141526105 141526213 -35447927 - MIR SINE MIR -54 208 94 2387 77 0 0 chrX 141526628 141526925 -35447215 - AluY SINE Alu -14 297 1 186 103 0 0 chrX 141528006 141528035 -35446105 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 4784 162 20 11 chrX 141528461 141529131 -35445009 - L1PA13 LINE L1 0 6163 5501 231 88 0 0 chrX 141529131 141529165 -35444975 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4784 162 20 11 chrX 141529165 141530133 -35444007 - L1PA13 LINE L1 -662 5501 4405 241 288 0 0 chrX 141530520 141530579 -35443561 + L2 LINE L2 3214 3272 0 395 267 124 60 chrX 141531991 141532097 -35442043 - L2 LINE L2 0 3313 3215 7691 60 19 10 chrX 141532097 141533095 -35441045 - LTR13 LTR ERVK 0 1007 1 395 267 124 60 chrX 141533095 141533136 -35441004 - L2 LINE L2 -98 3215 3178 2327 88 0 0 chrX 141533136 141533431 -35440709 + AluSc SINE Alu 1 295 -14 395 267 124 60 chrX 141533431 141533499 -35440641 - L2 LINE L2 -135 3178 3083 235 369 85 14 chrX 141533516 141533657 -35440483 - L2 LINE L2 -3128 186 36 22 35 0 0 chrX 141533909 141533938 -35440202 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 141535999 141536020 -35438120 + AT_rich Low_complexity Low_complexity 1 21 0 223 238 50 50 chrX 141536218 141536243 -35437897 + MIR SINE MIR 68 92 -170 1865 156 56 17 chrX 141536243 141536602 -35437538 - THE1C LTR MaLR -2 373 1 223 238 50 50 chrX 141536602 141536677 -35437463 + MIR SINE MIR 91 168 -94 463 271 49 35 chrX 141536845 141536989 -35437151 + L2 LINE L2 3168 3313 0 2359 121 8 8 chrX 141537064 141537429 -35436711 + L1PB1 LINE L1 5787 6151 0 24 0 0 0 chrX 141537633 141537657 -35436483 + AT_rich Low_complexity Low_complexity 1 24 0 647 263 10 39 chrX 141538141 141538346 -35435794 + MER20 DNA MER1_type 20 218 -1 258 259 118 39 chrX 141538786 141539227 -35434913 - L1M4 LINE L1 -2883 3263 2788 1646 209 67 6 chrX 141539242 141539586 -35434554 + L1M1 LINE L1 16 380 -7185 366 107 0 0 chrX 141539605 141539661 -35434479 + (TA)n Simple_repeat Simple_repeat 2 57 0 315 267 0 0 chrX 141539662 141539752 -35434388 - L1MC4 LINE L1 -1339 6703 6614 193 182 39 117 chrX 141539904 141539981 -35434159 - L2 LINE L2 -8 3305 3235 767 336 12 0 chrX 141539984 141540237 -35433903 - MIR SINE MIR -5 257 2 23 0 0 0 chrX 141541260 141541283 -35432857 + AT_rich Low_complexity Low_complexity 1 23 0 579 163 10 0 chrX 141541326 141541424 -35432716 - Tigger1 DNA MER2_type -367 2051 1953 315 71 0 0 chrX 141541609 141541651 -35432489 + (CA)n Simple_repeat Simple_repeat 2 43 0 2185 172 54 5 chrX 141541717 141542123 -35432017 + MSTA LTR MaLR 3 428 0 1914 215 24 85 chrX 141542297 141542911 -35431229 - MER92B LTR ERV1 -59 577 1 868 287 129 44 chrX 141543977 141544008 -35430132 + L2 LINE L2 2820 2847 -466 14264 151 14 5 chrX 141544008 141546405 -35427735 - Tigger1 DNA MER2_type 0 2418 1 868 287 129 44 chrX 141546405 141546808 -35427332 + L2 LINE L2 2847 3291 -22 354 301 103 35 chrX 141548362 141548524 -35425616 - L2 LINE L2 -54 3259 3109 243 0 0 0 chrX 141548524 141548551 -35425589 + (TG)n Simple_repeat Simple_repeat 1 27 0 354 301 103 35 chrX 141548551 141548700 -35425440 - L2 LINE L2 -204 3109 2927 838 280 21 25 chrX 141549004 141549243 -35424897 + MIR SINE MIR 15 252 -10 2062 140 90 18 chrX 141549889 141550288 -35423852 - MSTA LTR MaLR 0 428 1 231 356 50 10 chrX 141551161 141551262 -35422878 - L2 LINE L2 0 3272 3168 318 315 138 8 chrX 141552481 141552611 -35421529 + L2 LINE L2 3166 3312 -1 26 50 0 0 chrX 141552806 141552846 -35421294 + AT_rich Low_complexity Low_complexity 1 40 0 1228 214 12 28 chrX 141553559 141553882 -35420258 + L1MB8 LINE L1 5653 5970 -208 10228 184 4 4 chrX 141553974 141556542 -35417598 - L1PA12 LINE L1 -62 6757 3992 523 136 0 0 chrX 141556543 141556631 -35417509 + L1PA15-16 LINE L1 2805 2892 -3957 6236 53 63 1 chrX 141556635 141557444 -35416696 + L1PA6 LINE L1 5281 6139 -15 226 336 29 0 chrX 141557429 141557533 -35416607 + L1MC4 LINE L1 6597 6703 -1339 * 233 282 29 0 chrX 141557462 141557565 -35416575 - L1MC4 LINE L1 -1323 6719 6614 234 0 0 0 chrX 141557565 141557591 -35416549 + (GA)n Simple_repeat Simple_repeat 2 27 0 1726 180 6 10 chrX 141557605 141558009 -35416131 + L1P LINE L1 2191 2596 -3550 * 4256 209 8 34 chrX 141557980 141558833 -35415307 - L1PA12 LINE L1 -5045 1742 912 490 249 11 7 chrX 141558888 141559073 -35415067 + L1MB7 LINE L1 5985 6169 -11 1877 275 92 54 chrX 141559389 141560527 -35413613 - L2 LINE L2 -47 3266 2066 250 238 66 66 chrX 141560865 141560987 -35413153 - MIR SINE MIR -70 192 71 366 269 34 59 chrX 141561445 141561564 -35412576 + L2 LINE L2 3184 3299 -14 453 289 0 89 chrX 141561644 141561834 -35412306 - MER5B DNA MER1_type 0 178 6 256 333 0 0 chrX 141563293 141563365 -35410775 + L3 LINE CR1 63 134 -1443 215 356 79 40 chrX 141564056 141564258 -35409882 + L3b LINE CR1 1103 1312 -271 368 258 21 10 chrX 141564655 141564752 -35409388 - L2 LINE L2 0 3272 3175 180 97 0 0 chrX 141565132 141565163 -35408977 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2089 101 0 17 chrX 141565172 141565459 -35408681 - AluSx SINE Alu -30 282 1 1962 174 26 3 chrX 141566138 141566489 -35407651 - MLT1A1 LTR MaLR -6 359 1 1777 223 38 24 chrX 141566794 141567212 -35406928 - MSTC LTR MaLR -2 426 3 208 268 70 14 chrX 141567670 141567741 -35406399 + MIR SINE MIR 66 140 -122 210 71 0 0 chrX 141567788 141567816 -35406324 + (TA)n Simple_repeat Simple_repeat 2 29 0 202 345 97 9 chrX 141568192 141568305 -35405835 + MIR SINE MIR 72 194 -68 252 172 172 0 chrX 141568314 141568372 -35405768 + L1MC4a LINE L1 7620 7687 -121 26 30 0 0 chrX 141568374 141568407 -35405733 + AT_rich Low_complexity Low_complexity 1 33 0 278 71 24 0 chrX 141568407 141568449 -35405691 - L1PB1 LINE L1 -5 6146 6104 7009 211 7 4 chrX 141568454 141570020 -35404120 - L1 LINE L1 -1095 5051 3481 361 282 36 74 chrX 141570088 141570397 -35403743 + L1MC4 LINE L1 7741 8037 -5 22 0 0 0 chrX 141571138 141571160 -35402980 + AT_rich Low_complexity Low_complexity 1 22 0 433 148 0 12 chrX 141573101 141573182 -35400958 + MLT1J LTR MaLR 1 80 -544 1348 255 33 3 chrX 141573214 141573543 -35400597 + MLT1E2 LTR MaLR 286 624 -2 504 128 13 0 chrX 141573697 141573775 -35400365 - L1MC/D LINE L1 -716 5617 5539 559 326 112 16 chrX 141573775 141574088 -35400052 + MLT1J LTR MaLR 154 496 -15 6549 31 0 0 chrX 141574230 141575003 -35399137 + L1PA4 LINE L1 5382 6154 -1 356 192 200 39 chrX 141575528 141575592 -35398548 - MER112 DNA MER1_type -33 227 175 198 71 0 0 chrX 141575592 141575620 -35398520 + (AATAG)n Simple_repeat Simple_repeat 5 32 0 356 192 200 39 chrX 141575620 141575685 -35398455 - MER112 DNA MER1_type -85 175 77 239 283 53 26 chrX 141575895 141576008 -35398132 + HAL1b LINE L1 1229 1344 -4 216 339 36 18 chrX 141576155 141576267 -35397873 - L2 LINE L2 -223 3049 2936 390 318 30 8 chrX 141577379 141577511 -35396629 - MIR SINE MIR -115 147 13 585 264 7 14 chrX 141578471 141578615 -35395525 - MIR SINE MIR -73 189 47 1985 83 9 98 chrX 141579086 141579413 -35394727 - AluSq SINE Alu -15 298 1 405 284 33 9 chrX 141579631 141579761 -35394379 - MIR SINE MIR -71 137 18 277 304 19 76 chrX 141580109 141580267 -35393873 + L2 LINE L2 2914 3062 -210 433 293 103 52 chrX 141581663 141581895 -35392245 - L2 LINE L2 -56 3257 3014 889 162 180 0 chrX 141581941 141582163 -35391977 + L1P LINE L1 3089 3350 -2796 * 3726 117 35 0 chrX 141582134 141582730 -35391410 + L1P LINE L1 4787 5403 -743 746 73 7 152 chrX 141682739 141682890 -35291250 - AluSq/x SINE Alu -180 133 5 1075 303 32 78 chrX 141682926 141683576 -35290564 + L2 LINE L2 2003 2622 -692 2038 227 37 96 chrX 141683590 141684030 -35290110 + MER76 LTR ERV 1 382 -306 378 108 0 0 chrX 141684030 141684095 -35290045 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2038 227 37 96 chrX 141684095 141684385 -35289755 + MER76 LTR ERV 382 688 0 2290 251 69 30 chrX 141684387 141685831 -35288309 + L1MD2 LINE L1 4645 6132 -227 31 0 0 0 chrX 141685846 141685877 -35288263 + AT_rich Low_complexity Low_complexity 1 31 0 308 377 33 0 chrX 141686421 141686543 -35287597 - L2 LINE L2 -4 3268 3143 337 331 16 24 chrX 141686997 141687124 -35287016 - L2 LINE L2 -5 3267 3142 254 290 106 92 chrX 141687248 141687386 -35286754 + L2 LINE L2 1945 2080 -1234 3242 123 2 0 chrX 141687386 141687881 -35286259 - L1PA13 LINE L1 -5 6158 5663 254 290 106 92 chrX 141687881 141688090 -35286050 + L2 LINE L2 2080 2297 -1017 307 296 9 65 chrX 141688113 141688221 -35285919 - L2 LINE L2 0 3272 3171 727 271 35 22 chrX 141688293 141688522 -35285618 - MIR SINE MIR 0 262 31 634 291 6 0 chrX 141688556 141688721 -35285419 + LTR22 LTR ERVK 344 509 0 207 0 0 0 chrX 141688789 141688812 -35285328 + (T)n Simple_repeat Simple_repeat 1 23 0 313 382 34 26 chrX 141688839 141689072 -35285068 + L2 LINE L2 2804 3038 -234 2562 98 27 3 chrX 141689185 141689551 -35284589 + THE1C LTR MaLR 1 375 0 28 0 0 0 chrX 141689628 141689656 -35284484 + AT_rich Low_complexity Low_complexity 1 28 0 1980 145 0 3 chrX 141689656 141689945 -35284195 - AluSx SINE Alu -22 290 3 202 377 13 82 chrX 141689945 141690104 -35284036 + L2 LINE L2 3096 3243 -29 829 264 52 0 chrX 141691611 141691823 -35282317 + MER58A DNA MER1_type 1 223 -1 296 216 66 108 chrX 141693825 141693992 -35280148 + L2 LINE L2 3153 3312 -1 398 273 42 61 chrX 141694077 141694341 -35279799 + L1ME LINE L1 5388 5646 -524 1003 218 57 13 chrX 141694441 141694670 -35279470 - MIR SINE MIR -6 256 18 1783 298 79 27 chrX 141695839 141696712 -35277428 - L2 LINE L2 -61 3252 2323 415 313 39 1 chrX 141696720 141696934 -35277206 - MLT1G3 LTR MaLR 0 595 356 789 284 33 36 chrX 141696999 141697376 -35276764 - MLT1G3 LTR MaLR -209 386 1 1320 293 44 26 chrX 141697376 141697919 -35276221 - L2 LINE L2 -995 2319 1767 1375 256 111 26 chrX 141697977 141698435 -35275705 - MLT1D LTR MaLR -8 497 1 891 274 22 13 chrX 141699189 141699419 -35274721 - MIR SINE MIR -26 236 5 305 277 7 7 chrX 141699609 141699750 -35274390 + (TTAA)n Simple_repeat Simple_repeat 1 141 0 252 314 88 0 chrX 141699830 141699932 -35274208 - MIR SINE MIR -70 192 82 252 0 0 0 chrX 141700072 141700100 -35274040 + (TG)n Simple_repeat Simple_repeat 2 29 0 251 236 35 121 chrX 141700559 141700733 -35273407 - MLT1J2 LTR MaLR -291 159 1 342 307 27 60 chrX 141701054 141701204 -35272936 - MIR SINE MIR -71 191 47 491 259 50 84 chrX 141702068 141702307 -35271833 - MIR SINE MIR 0 262 32 1146 267 97 51 chrX 141702523 141703089 -35271051 + MLT1E LTR MaLR 1 592 -1 189 333 0 0 chrX 141703508 141703559 -35270581 - L2 LINE L2 -2 3311 3261 238 376 21 28 chrX 141704404 141704545 -35269595 - L2 LINE L2 -14 3258 3119 223 279 47 58 chrX 141704636 141704722 -35269418 - MIR SINE MIR -82 180 96 3262 51 5 0 chrX 141704833 141705244 -35268896 + L1PA7 LINE L1 5742 6154 0 2325 15 0 0 chrX 141705890 141706157 -35267983 - L1PA2 LINE L1 0 6155 5889 1768 188 52 41 chrX 141706409 141706945 -35267195 - MLT2A2 LTR ERVL 0 554 1 359 220 0 51 chrX 141707740 141707807 -35266333 + MIR SINE MIR 66 127 -81 342 0 0 0 chrX 141707807 141707845 -35266295 + (TAA)n Simple_repeat Simple_repeat 1 38 0 359 220 0 51 chrX 141707845 141707887 -35266253 + MIR SINE MIR 127 170 -38 2393 68 0 0 chrX 141708084 141708392 -35265748 + AluY SINE Alu 1 308 -3 258 368 39 7 chrX 141710091 141710246 -35263894 + L2 LINE L2 88 247 -3067 827 278 42 18 chrX 141710292 141710674 -35263466 + L1ME1 LINE L1 4552 4942 -1204 288 0 0 0 chrX 141710687 141710719 -35263421 + (TG)n Simple_repeat Simple_repeat 2 33 0 195 184 0 0 chrX 141710750 141710788 -35263352 + (TA)n Simple_repeat Simple_repeat 1 38 0 365 235 24 72 chrX 141710837 141710885 -35263255 + L1ME1 LINE L1 4981 5030 -1116 2399 75 0 16 chrX 141710885 141711192 -35262948 + AluY SINE Alu 1 302 -9 365 235 24 72 chrX 141711192 141711394 -35262746 + L1ME1 LINE L1 5030 5219 -927 * 1194 258 25 33 chrX 141711379 141711828 -35262312 + L1ME1 LINE L1 5718 6162 -4 182 88 0 29 chrX 141711855 141711889 -35262251 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 26 64 0 0 chrX 141712059 141712106 -35262034 + AT_rich Low_complexity Low_complexity 1 47 0 1461 221 87 6 chrX 141713757 141714123 -35260017 + MSTD LTR MaLR 1 396 0 486 342 65 43 chrX 141714383 141714874 -35259266 - LTR33 LTR ERVL 0 521 20 17710 195 32 11 chrX 141714874 141718025 -35256115 + L1MA2 LINE L1 29 3114 -4609 2225 106 17 0 chrX 141718025 141718327 -35255813 + AluSp SINE Alu 1 307 -6 17710 195 32 11 chrX 141718327 141719205 -35254935 + L1MA2 LINE L1 3114 3973 -3750 2220 118 47 16 chrX 141719205 141719569 -35254571 + THE1C LTR MaLR 1 375 0 17710 195 32 11 chrX 141719569 141719830 -35254310 + L1MA2 LINE L1 3973 4227 -3496 2485 129 36 17 chrX 141719830 141720248 -35253892 + MSTA LTR MaLR 3 428 0 17710 195 32 11 chrX 141720248 141723490 -35250650 + L1MA2 LINE L1 4227 7721 -2 215 296 161 0 chrX 141723683 141723764 -35250376 + L2 LINE L2 3169 3262 -10 256 353 85 13 chrX 141724022 141724175 -35249965 - MIR3 SINE MIR 0 208 45 249 268 165 32 chrX 141724126 141724287 -35249853 + MIR SINE MIR 5 185 -68 * 663 283 101 55 chrX 141724294 141724771 -35249369 + LTR33 LTR ERVL 3 501 -20 189 206 0 0 chrX 141724789 141724823 -35249317 + MIR SINE MIR 208 241 -21 243 204 19 0 chrX 141724843 141724897 -35249243 + (TAG)n Simple_repeat Simple_repeat 1 55 0 318 336 73 69 chrX 141725743 141726017 -35248123 + L3 LINE CR1 233 507 -1070 203 242 81 0 chrX 141726105 141726167 -35247973 + L3 LINE CR1 569 635 -942 529 236 22 28 chrX 141726195 141726377 -35247763 - L1MD2 LINE L1 -16 6343 6163 * 703 217 46 138 chrX 141726375 141727003 -35247137 - L1M4 LINE L1 -1459 4687 4118 2648 146 24 7 chrX 141728006 141728458 -35245682 - LTR46 LTR ERV1 0 460 1 12998 67 1 5 chrX 141728458 141730244 -35243896 - LTR46-int LTR ERV1 0 6985 5206 32727 107 17 12 chrX 141730251 141735299 -35238841 - LTR46-int LTR ERV1 -1914 5071 1 2761 130 36 2 chrX 141735299 141735744 -35238396 - LTR46 LTR ERV1 0 460 1 470 283 40 17 chrX 141736731 141736904 -35237236 + MER97b DNA MER1_type? 1 177 -876 687 110 0 0 chrX 141736904 141737004 -35237136 + AluY SINE Alu 204 303 -8 27 0 0 0 chrX 141737363 141737390 -35236750 + AT_rich Low_complexity Low_complexity 1 27 0 275 271 8 8 chrX 141737434 141737556 -35236584 - L1M4 LINE L1 -1709 4437 4316 897 228 95 35 chrX 141737579 141738009 -35236131 - L1MA9 LINE L1 -25 6266 5811 1157 263 31 8 chrX 141738381 141738769 -35235371 - L1M4 LINE L1 -1194 4952 4556 554 309 180 0 chrX 141738777 141738994 -35235146 + L2 LINE L2 2095 2350 -964 272 322 107 13 chrX 141739056 141739205 -35234935 - MIR SINE MIR -83 179 17 1754 146 28 69 chrX 141739520 141739911 -35234229 + THE1C LTR MaLR 1 375 0 186 384 9 9 chrX 141740163 141740275 -35233865 + L2 LINE L2 2890 3001 -271 590 293 25 64 chrX 141740306 141740620 -35233520 + L2 LINE L2 3008 3309 -4 549 316 84 76 chrX 141740632 141740895 -35233245 - L2 LINE L2 -2 3270 3006 406 232 18 0 chrX 141741013 141741138 -35233002 - MER58 DNA MER1_type -102 239 40 1131 210 22 110 chrX 141741560 141741602 -35232538 + MLT1B LTR MaLR 22 66 -324 2070 140 130 18 chrX 141741602 141741987 -35232153 - MSTA LTR MaLR 0 428 1 1131 210 22 110 chrX 141741987 141742344 -35231796 + MLT1B LTR MaLR 66 386 -4 324 312 76 32 chrX 141743332 141743742 -35230398 - MARNA DNA Mariner -14 572 145 383 368 118 13 chrX 141743922 141744226 -35229914 - L2 LINE L2 -466 2848 2513 2144 78 4 4 chrX 141745121 141745402 -35228738 + AluY SINE Alu 1 281 -30 393 245 0 19 chrX 141745618 141745724 -35228416 + MLT1J1 LTR MaLR 44 147 -299 408 311 30 18 chrX 141746060 141746224 -35227916 - MIR SINE MIR -23 239 74 2783 74 6 0 chrX 141746369 141746722 -35227418 + THE1A LTR MaLR 1 355 0 311 333 32 26 chrX 141746828 141747017 -35227123 + L1MC/D LINE L1 5605 5794 -2014 1692 35 0 0 chrX 141747020 141747222 -35226918 + L1PA4 LINE L1 5950 6151 -4 24 0 0 0 chrX 141747334 141747358 -35226782 + AT_rich Low_complexity Low_complexity 1 24 0 9953 187 34 8 chrX 141747533 141751959 -35222181 - L1MA1 LINE L1 0 7721 3181 605 161 0 40 chrX 141751959 141752083 -35222057 - L1PA11 LINE L1 0 6174 6056 332 340 0 0 chrX 141752090 141752187 -35221953 - L1P3 LINE L1 -5088 787 691 1191 281 72 77 chrX 141752216 141752866 -35221274 - L1P3 LINE L1 -5814 647 1 15630 193 29 17 chrX 141752868 141753563 -35220577 - L1M1 LINE L1 -4389 3176 2491 1904 126 68 0 chrX 141753563 141753841 -35220299 - AluSx SINE Alu -15 297 1 15630 193 29 17 chrX 141753841 141756261 -35217879 - L1M1 LINE L1 -5074 2491 25 534 305 12 6 chrX 141756916 141757080 -35217060 - MARNA DNA Mariner -394 192 28 1074 198 151 73 chrX 141757636 141758060 -35216080 + MSTB2 LTR MaLR 1 457 0 386 175 0 0 chrX 141758131 141758194 -35215946 - MLT1A1 LTR MaLR 0 365 303 293 167 13 0 chrX 141758787 141758865 -35215275 + CT-rich Low_complexity Low_complexity 2 80 0 789 255 28 28 chrX 141759046 141759262 -35214878 + MIR SINE MIR 34 249 -13 373 305 21 21 chrX 141759358 141759499 -35214641 + MIR3 SINE MIR 63 203 -5 22 0 0 0 chrX 141760626 141760648 -35213492 + AT_rich Low_complexity Low_complexity 1 22 0 738 145 8 0 chrX 141760650 141760774 -35213366 + L1MB5 LINE L1 6042 6166 -8 295 345 43 1 chrX 141761139 141761272 -35212868 + MIR3 SINE MIR 48 190 -18 239 333 70 31 chrX 141761599 141761728 -35212412 - MIR SINE MIR -112 150 17 573 329 17 123 chrX 141761759 141762035 -35212105 - L2 LINE L2 -1 3271 3068 2509 54 0 13 chrX 141762035 141762350 -35211790 + AluY SINE Alu 1 311 0 573 329 17 123 chrX 141762350 141762569 -35211571 - L2 LINE L2 -204 3068 2827 1508 267 83 65 chrX 141762681 141764761 -35209379 - L1ME3A LINE L1 -261 5909 3800 14541 188 52 9 chrX 141764767 141767599 -35206541 + L1M1 LINE L1 19 2971 -4594 6340 163 22 14 chrX 141767599 141768701 -35205439 + ERVL-B1 LTR ERVL 4647 5756 -8 1654 207 159 5 chrX 141768702 141769118 -35205022 + MLT2B1 LTR ERVL 1 480 -40 464 184 11 11 chrX 141769162 141769341 -35204799 + (TA)n Simple_repeat Simple_repeat 2 180 0 341 236 0 28 chrX 141769366 141769438 -35204702 + MLT1D LTR MaLR 288 357 -148 343 109 42 25 chrX 141769448 141769567 -35204573 + (TA)n Simple_repeat Simple_repeat 2 122 0 200 194 30 15 chrX 141769582 141769649 -35204491 + (TA)n Simple_repeat Simple_repeat 1 68 0 253 56 0 28 chrX 141769685 141769721 -35204419 + MLT2D LTR ERVL 380 414 0 2191 114 0 0 chrX 141770176 141770482 -35203658 - AluSg SINE Alu -4 306 1 1093 249 108 55 chrX 141770712 141771149 -35202991 - MLT1D LTR MaLR -45 460 1 422 341 62 35 chrX 141771150 141771440 -35202700 + L1ME LINE L1 104 401 -5669 320 132 0 73 chrX 141771448 141771541 -35202599 + FLAM_A SINE Alu 71 133 0 1580 21 0 16 chrX 141771741 141771933 -35202207 - L1PA4 LINE L1 0 6155 5967 23 33 0 0 chrX 141772005 141772035 -35202105 + AT_rich Low_complexity Low_complexity 1 30 0 685 179 38 98 chrX 141772613 141772902 -35201238 + L1MA7 LINE L1 6032 6293 0 449 350 57 28 chrX 141773047 141773470 -35200670 + L1ME LINE L1 2065 2499 -3581 235 330 57 17 chrX 141773690 141773920 -35200220 + L1ME LINE L1 2725 2963 -3117 291 338 97 17 chrX 141774165 141774627 -35199513 + L1ME LINE L1 3258 3756 -2324 271 296 20 68 chrX 141774632 141774794 -35199346 + L1ME LINE L1 3794 3941 -2139 642 58 0 0 chrX 141774794 141774881 -35199259 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 271 296 20 68 chrX 141774881 141774968 -35199172 + L1ME LINE L1 3941 4031 -2049 2597 201 26 5 chrX 141774993 141775569 -35198571 - L1MC1 LINE L1 -4 6329 5742 30 45 0 0 chrX 141775656 141775700 -35198440 + AT_rich Low_complexity Low_complexity 1 44 0 4966 218 22 17 chrX 141775725 141775914 -35198226 - L1MC1 LINE L1 -589 5744 5557 19474 41 2 15 chrX 141775914 141779148 -35194992 - L1PA5 LINE L1 -5 6149 2949 4966 218 22 17 chrX 141779148 141779727 -35194413 - L1MC1 LINE L1 -776 5557 4983 2315 60 0 3 chrX 141779727 141780055 -35194085 + AluY SINE Alu 1 327 0 4966 218 22 17 chrX 141780055 141781092 -35193048 - L1MC1 LINE L1 -1350 4983 3930 525 292 73 46 chrX 141781309 141781528 -35192612 - MIR SINE MIR -19 243 19 478 306 55 15 chrX 141781572 141781801 -35192339 - MIR SINE MIR 0 262 25 731 334 36 15 chrX 141782244 141782576 -35191564 + LTR16B LTR ERVL 112 450 -14 1516 282 43 23 chrX 141782590 141783279 -35190861 + L1ME2 LINE L1 3621 4323 -1823 2060 247 101 23 chrX 141783280 141784823 -35189317 + L1ME2 LINE L1 4507 6164 0 31 26 0 0 chrX 141785265 141785303 -35188837 + AT_rich Low_complexity Low_complexity 1 38 0 183 237 26 0 chrX 141786256 141786294 -35187846 - L2 LINE L2 -9 3263 3225 209 194 0 0 chrX 141786377 141786413 -35187727 + (CA)n Simple_repeat Simple_repeat 2 37 0 606 324 11 6 chrX 141786464 141786646 -35187494 - L3 LINE CR1 -105 1472 1290 261 318 70 8 chrX 141786895 141787024 -35187116 - MIR SINE MIR -6 256 120 826 196 58 0 chrX 141787264 141787437 -35186703 - L1 LINE L1 -944 5202 5020 720 182 25 0 chrX 141787437 141787558 -35186582 + FLAM_C SINE Alu 1 124 -19 1252 193 11 15 chrX 141787587 141787852 -35186288 - L1 LINE L1 -1118 5028 4765 975 183 37 12 chrX 141787863 141788104 -35186036 - L1MA4A LINE L1 0 6303 6057 623 226 13 0 chrX 141788151 141788306 -35185834 - L1 LINE L1 -3612 2534 2378 * 9044 132 24 6 chrX 141788296 141790351 -35183789 - L1PBa LINE L1 -3935 2927 634 1174 135 5 0 chrX 141790354 141790546 -35183594 - L1PBa LINE L1 -6668 195 3 322 93 0 0 chrX 141790549 141790592 -35183548 + MSTA LTR MaLR 386 428 0 2226 173 2 15 chrX 141790592 141790991 -35183149 + MSTA-int LTR MaLR 1 394 -1257 815 176 0 0 chrX 141791068 141791227 -35182913 - L1MB1 LINE L1 0 6168 6010 2414 78 3 0 chrX 141791389 141791697 -35182443 + AluSc SINE Alu 1 309 0 1653 181 3 3 chrX 141792160 141792447 -35181693 - AluJb SINE Alu -19 293 7 2054 143 48 28 chrX 141792795 141793152 -35180988 - THE1B LTR MaLR 0 364 1 7957 111 4 5 chrX 141793152 141794263 -35179877 - THE1B-int LTR MaLR 0 1580 471 320 71 0 0 chrX 141794275 141794317 -35179823 - THE1C LTR MaLR -331 44 3 2205 110 0 10 chrX 141794829 141795139 -35179001 - AluSg SINE Alu -3 307 1 22 35 0 0 chrX 141795438 141795467 -35178673 + AT_rich Low_complexity Low_complexity 1 29 0 556 294 6 24 chrX 141795949 141796119 -35178021 - MER5B DNA MER1_type -4 174 8 517 355 47 4 chrX 141796204 141796438 -35177702 + MIR SINE MIR 11 254 -8 22 35 0 0 chrX 141796520 141796549 -35177591 + AT_rich Low_complexity Low_complexity 1 29 0 5431 183 19 16 chrX 141796977 141797600 -35176540 + L1PA16 LINE L1 4056 4675 -1491 180 0 0 0 chrX 141797600 141797620 -35176520 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 5431 183 19 16 chrX 141797620 141799111 -35175029 + L1PA16 LINE L1 4675 6165 -1 2824 13 0 0 chrX 141799187 141799498 -35174642 - AluYa5 SINE Alu 0 311 1 3774 240 56 26 chrX 141799519 141801073 -35173067 - L1MC4a LINE L1 0 7808 6307 195 400 50 0 chrX 141801228 141801328 -35172812 - L3 LINE CR1 -151 1426 1322 318 183 0 0 chrX 141802785 141802856 -35171284 + (TA)n Simple_repeat Simple_repeat 1 71 0 2535 215 36 23 chrX 141803040 141803721 -35170419 - L1MA9 LINE L1 -450 5862 5170 1813 178 33 25 chrX 141803723 141804121 -35170019 + L1MA9 LINE L1 5873 6273 -39 273 260 153 0 chrX 141804625 141804775 -35169365 + L1ME LINE L1 5660 5832 -289 1004 362 44 12 chrX 141804785 141805374 -35168766 + L1PA13 LINE L1 1 608 -6179 381 372 6 6 chrX 141805680 141805836 -35168304 + L2 LINE L2 2875 3030 -242 2375 55 0 0 chrX 141805836 141806128 -35168012 - AluY SINE Alu -19 292 1 9919 204 61 14 chrX 141806136 141808425 -35165715 - L1P LINE L1 -1510 4636 2242 1650 217 110 9 chrX 141808423 141808888 -35165252 - L1M4 LINE L1 -780 5366 4855 * 250 207 35 0 chrX 141810553 141810611 -35163529 + GA-rich Low_complexity Low_complexity 3 62 0 227 318 0 45 chrX 141811249 141811337 -35162803 - L2 LINE L2 -5 3308 3225 802 261 46 0 chrX 141811644 141811839 -35162301 + MIR SINE MIR 1 204 -58 204 179 0 0 chrX 141811841 141811880 -35162260 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 306 322 0 0 chrX 141811880 141811970 -35162170 + L1MC4 LINE L1 6614 6703 -1339 309 238 0 0 chrX 141811978 141812058 -35162082 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 1580 182 7 28 chrX 141812058 141812349 -35161791 - AluSx SINE Alu -27 285 1 299 255 88 20 chrX 141813167 141813269 -35160871 + MIR SINE MIR 81 189 -73 519 270 184 0 chrX 141813473 141813658 -35160482 - MLT1F1 LTR MaLR 0 567 349 22 0 0 0 chrX 141814124 141814146 -35159994 + AT_rich Low_complexity Low_complexity 1 22 0 852 298 97 0 chrX 141814566 141814794 -35159346 - MIR SINE MIR 0 262 13 288 298 53 11 chrX 141814866 141814960 -35159180 + MIR SINE MIR 40 137 -125 443 33 33 0 chrX 141815051 141815111 -35159029 + (TTATG)n Simple_repeat Simple_repeat 1 62 0 198 304 114 63 chrX 141815241 141815399 -35158741 - MIR SINE MIR -31 231 66 1943 46 4 19 chrX 141815431 141815691 -35158449 + L1PA4 LINE L1 5896 6151 -4 304 38 57 19 chrX 141815913 141815966 -35158174 + T-rich Low_complexity Low_complexity 1 55 0 3931 36 2 0 chrX 141815966 141816438 -35157702 - L1PA3 LINE L1 -24 6131 5659 218 204 0 0 chrX 141816465 141816509 -35157631 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 337 276 31 0 chrX 141816666 141816764 -35157376 + MIR SINE MIR 146 246 -16 1522 218 25 44 chrX 141818568 141818976 -35155164 - MLT1D LTR MaLR 0 505 106 452 259 116 26 chrX 141819898 141820130 -35154010 - MIR SINE MIR -6 256 4 444 286 26 88 chrX 141820201 141820428 -35153712 + MIR SINE MIR 1 213 -49 27 87 0 0 chrX 141821941 141822010 -35152130 + AT_rich Low_complexity Low_complexity 1 69 0 2551 40 0 0 chrX 141822014 141822311 -35151829 + AluY SINE Alu 1 297 -14 317 234 19 95 chrX 141822613 141822771 -35151369 - L1MC/D LINE L1 -1961 5847 5702 2344 84 0 3 chrX 141822805 141823115 -35151025 - AluY SINE Alu -2 309 1 344 335 97 55 chrX 141823124 141823226 -35150914 - L1MC/D LINE L1 -476 5645 5549 2453 153 50 2 chrX 141823226 141823690 -35150450 - LTR19A LTR ERV1 0 486 1 344 335 97 55 chrX 141823690 141823844 -35150296 - L1MC/D LINE L1 -572 5549 5378 652 213 7 39 chrX 141824292 141824447 -35149693 - MLT1E2 LTR MaLR -2 624 475 363 121 0 0 chrX 141824776 141824834 -35149306 + (TC)n Simple_repeat Simple_repeat 1 58 0 339 191 0 0 chrX 141824833 141824901 -35149239 + (CA)n Simple_repeat Simple_repeat 1 68 0 * 989 267 78 51 chrX 141824945 141825534 -35148606 - HAL1 LINE L1 -121 2386 1782 6574 159 14 7 chrX 141825550 141827063 -35147077 - L1MA1 LINE L1 0 7721 6197 852 119 8 0 chrX 141827045 141827179 -35146961 - L1MA1 LINE L1 -4974 2591 2457 * 26 50 0 0 chrX 141829442 141829482 -35144658 + AT_rich Low_complexity Low_complexity 1 40 0 1782 144 22 0 chrX 141829486 141829763 -35144377 + AluSc SINE Alu 1 283 -26 315 214 0 0 chrX 141829763 141829833 -35144307 + (TA)n Simple_repeat Simple_repeat 1 70 0 227 222 0 0 chrX 141829840 141829885 -35144255 - L1MC4 LINE L1 -1339 6703 6659 241 281 0 62 chrX 141829892 141829988 -35144152 - L1MC4 LINE L1 -1339 6703 6614 255 315 0 0 chrX 141829996 141830085 -35144055 - L1MC4 LINE L1 -1339 6703 6615 261 274 0 0 chrX 141830087 141830171 -35143969 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 * 480 237 0 34 chrX 141830166 141830343 -35143797 + (CATA)n Simple_repeat Simple_repeat 2 172 0 227 247 11 0 chrX 141830344 141830438 -35143702 + L1MCa LINE L1 1995 6983 -1339 282 258 0 0 chrX 141830536 141830625 -35143515 + GA-rich Low_complexity Low_complexity 2 90 0 287 313 12 0 chrX 141831110 141831190 -35142950 - L2 LINE L2 0 3313 3233 29 0 0 0 chrX 141831623 141831652 -35142488 + AT_rich Low_complexity Low_complexity 1 29 0 2573 121 8 74 chrX 141831658 141832171 -35141969 - L1MA1 LINE L1 -33 6269 5791 * 9517 191 42 6 chrX 141832168 141833942 -35140198 - L1M1 LINE L1 -5406 2159 321 4153 102 2 5 chrX 141833951 141834519 -35139621 + LTR9B LTR ERV1 1 566 -78 1399 163 13 77 chrX 141834538 141834851 -35139289 - L1M1 LINE L1 -7253 312 20 600 297 92 56 chrX 141835300 141836122 -35138018 + L1ME LINE L1 3587 4438 -1708 22 0 0 0 chrX 141836329 141836351 -35137789 + AT_rich Low_complexity Low_complexity 1 22 0 5909 111 26 3 chrX 141836441 141837469 -35136671 + L1PB1 LINE L1 5100 6145 -6 38 22 0 0 chrX 141837470 141837515 -35136625 + AT_rich Low_complexity Low_complexity 1 45 0 474 349 70 29 chrX 141837599 141837840 -35136300 + MIR SINE MIR 11 261 -1 688 309 40 22 chrX 141838030 141838409 -35135731 + L1ME LINE L1 5093 5485 -679 2098 84 0 78 chrX 141838409 141838542 -35135598 + AluSc SINE Alu 1 143 -166 2827 10 0 0 chrX 141838542 141838853 -35135287 + AluY SINE Alu 1 311 0 2098 84 0 78 chrX 141838853 141839039 -35135101 + AluSc SINE Alu 143 295 -14 688 309 40 22 chrX 141839039 141839226 -35134914 + L1ME LINE L1 5485 5667 -497 1733 186 16 52 chrX 141839249 141839630 -35134510 + MLT1B LTR MaLR 3 369 -21 22 0 0 0 chrX 141839736 141839758 -35134382 + AT_rich Low_complexity Low_complexity 1 22 0 828 236 70 21 chrX 141839777 141840018 -35134122 + MIR SINE MIR 9 261 -1 195 222 0 0 chrX 141841690 141841726 -35132414 + L2 LINE L2 2941 2976 -296 359 318 77 36 chrX 141841903 141842098 -35132042 - MIR SINE MIR -12 250 48 25 51 0 0 chrX 141843600 141843639 -35130501 + AT_rich Low_complexity Low_complexity 1 39 0 294 295 13 0 chrX 141844213 141844291 -35129849 + L2 LINE L2 3235 3313 0 247 319 81 27 chrX 141844463 141844648 -35129492 + L2 LINE L2 3118 3312 -1 206 370 52 19 chrX 141845272 141845426 -35128714 - L2 LINE L2 -217 3055 2897 252 368 69 32 chrX 141845465 141845712 -35128428 - L2 LINE L2 -505 2809 2554 182 320 126 29 chrX 141845832 141845935 -35128205 - L2 LINE L2 -8 3264 3152 308 390 5 15 chrX 141846289 141846484 -35127656 - L2 LINE L2 -624 2690 2498 6118 187 30 23 chrX 141846553 141847506 -35126634 - L1MA7 LINE L1 0 6291 5346 2351 78 7 13 chrX 141847506 141847813 -35126327 - AluSq SINE Alu -8 305 1 6118 187 30 23 chrX 141847813 141849168 -35124972 - L1MA7 LINE L1 -945 5346 3965 267 307 153 15 chrX 141849306 141849443 -35124697 + MIR SINE MIR 18 173 -89 203 272 0 33 chrX 141849554 141849646 -35124494 + GA-rich Low_complexity Low_complexity 3 91 0 260 27 27 0 chrX 141850154 141850191 -35123949 + (GA)n Simple_repeat Simple_repeat 1 38 0 193 354 49 0 chrX 141850752 141850834 -35123306 - L2 LINE L2 -9 3263 3178 200 308 0 0 chrX 141851070 141851148 -35122992 + A-rich Low_complexity Low_complexity 2 79 0 21 0 0 0 chrX 141851360 141851381 -35122759 + AT_rich Low_complexity Low_complexity 1 21 0 505 254 164 65 chrX 141851992 141852050 -35122090 - MIR SINE MIR -3 259 208 2017 139 0 0 chrX 141852050 141852386 -35121754 - AluSg SINE Alu 0 336 1 505 254 164 65 chrX 141852386 141852558 -35121582 - MIR SINE MIR -54 208 5 1931 225 41 0 chrX 141852642 141853029 -35121111 + MSTB LTR MaLR 24 426 0 294 29 0 0 chrX 141853152 141853187 -35120953 + (TG)n Simple_repeat Simple_repeat 1 35 0 3695 161 42 24 chrX 141853709 141854455 -35119685 - LTR1B LTR ERV1 0 785 6 2016 133 4 0 chrX 141854683 141854962 -35119178 + AluSx SINE Alu 2 281 -31 240 35 0 0 chrX 141854967 141854996 -35119144 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1903 133 92 43 chrX 141855050 141855397 -35118743 + THE1B LTR MaLR 1 364 0 11329 101 6 4 chrX 141855397 141856975 -35117165 + THE1B-int LTR MaLR 1 1580 0 1973 116 41 61 chrX 141856975 141857338 -35116802 + THE1B LTR MaLR 1 356 -8 666 294 35 104 chrX 141857349 141857591 -35116549 - LTR16B LTR ERVL -40 424 167 186 43 0 0 chrX 141857591 141857614 -35116526 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1800 96 32 54 chrX 141857624 141857904 -35116236 - AluSg SINE Alu -36 274 1 666 294 35 104 chrX 141857904 141858103 -35116037 - LTR16B LTR ERVL -306 158 3 1201 200 71 63 chrX 141858166 141858531 -35115609 + MLT1A2 LTR MaLR 4 371 -3 5812 141 35 85 chrX 141858989 141860284 -35113856 - Tigger3b DNA MER2_type 0 1231 2 3546 22 0 0 chrX 141860684 141861094 -35113046 + L1PA5 LINE L1 5737 6146 -8 180 0 0 0 chrX 141861258 141861278 -35112862 + (CTA)n Simple_repeat Simple_repeat 1 20 0 282 29 0 0 chrX 141861659 141861694 -35112446 + (TA)n Simple_repeat Simple_repeat 2 36 0 271 340 27 7 chrX 141861714 141861861 -35112279 - L2 LINE L2 -56 3257 3108 289 281 140 9 chrX 141861963 141862077 -35112063 - L2 LINE L2 0 3313 3185 23 0 0 0 chrX 141862230 141862253 -35111887 + AT_rich Low_complexity Low_complexity 1 23 0 183 279 93 0 chrX 141862703 141862746 -35111394 - L2 LINE L2 -21 3251 3205 820 178 47 18 chrX 141862781 141862950 -35111190 - L1PA16 LINE L1 -2 6164 5991 21 0 0 0 chrX 141863014 141863035 -35111105 + AT_rich Low_complexity Low_complexity 1 21 0 1013 148 0 0 chrX 141863036 141863198 -35110942 - L1PA16 LINE L1 -193 5973 5812 939 191 16 6 chrX 141863522 141863772 -35110368 - L1MA8 LINE L1 0 6168 6038 1812 252 23 40 chrX 141864189 141864485 -35109655 - LTR40a LTR ERVL 0 519 234 1850 174 30 33 chrX 141864485 141864846 -35109294 + THE1B LTR MaLR 3 362 -2 1812 252 23 40 chrX 141864846 141865077 -35109063 - LTR40a LTR ERVL -285 234 1 1285 145 21 13 chrX 141865234 141865468 -35108672 - MER46A DNA MER2_type 0 236 1 17393 184 18 17 chrX 141865515 141868733 -35105407 + ERVL LTR ERVL 2114 5333 -431 6762 57 11 8 chrX 141868733 141870513 -35103627 + L1PA7 LINE L1 4376 6154 0 1254 256 95 17 chrX 141870566 141870976 -35103164 + MLT2B1 LTR ERVL 1 442 -78 264 186 70 47 chrX 141870983 141871069 -35103071 + L1MC4 LINE L1 6619 6706 -1336 387 194 0 0 chrX 141871071 141871179 -35102961 + (TA)n Simple_repeat Simple_repeat 1 108 0 684 97 0 0 chrX 141871185 141871278 -35102862 - L1PA8 LINE L1 -304 5868 5776 295 145 24 0 chrX 141871306 141871389 -35102751 + (TA)n Simple_repeat Simple_repeat 2 86 0 247 94 0 0 chrX 141871412 141871444 -35102696 + MLT2B1 LTR ERVL 431 462 -2 3807 181 11 12 chrX 141872445 141873167 -35100973 + L1PA16 LINE L1 5446 6166 0 375 293 9 17 chrX 141873433 141873549 -35100591 + MIR SINE MIR 147 261 -1 * 399 311 12 37 chrX 141873532 141873693 -35100447 - MIR SINE MIR -94 168 12 624 284 23 6 chrX 141873830 141874006 -35100134 - MIR SINE MIR -71 191 13 441 0 0 0 chrX 141874177 141874226 -35099914 + (CA)n Simple_repeat Simple_repeat 1 49 0 213 213 0 21 chrX 141874406 141874453 -35099687 + CT-rich Low_complexity Low_complexity 1 46 0 222 220 0 0 chrX 141874453 141874512 -35099628 + (TA)n Simple_repeat Simple_repeat 2 60 0 224 211 35 0 chrX 141874657 141874714 -35099426 + (TA)n Simple_repeat Simple_repeat 2 60 0 318 279 47 0 chrX 141874715 141874801 -35099339 - L1MC4 LINE L1 -1339 6703 6614 326 284 23 0 chrX 141874813 141874901 -35099239 - L1MC4 LINE L1 -1339 6703 6614 659 173 15 0 chrX 141874903 141875036 -35099104 + (CATA)n Simple_repeat Simple_repeat 4 138 0 319 315 0 0 chrX 141875037 141875126 -35099014 - L1MC4 LINE L1 -1339 6703 6615 265 296 23 0 chrX 141875137 141875225 -35098915 - L1MC4 LINE L1 -1339 6703 6614 213 175 0 0 chrX 141875234 141875274 -35098866 + (TA)n Simple_repeat Simple_repeat 1 40 0 245 151 41 55 chrX 141875275 141875348 -35098792 + LTR66 LTR ERVL 394 465 -145 23 0 0 0 chrX 141876122 141876145 -35097995 + AT_rich Low_complexity Low_complexity 1 23 0 481 100 0 25 chrX 141876304 141876384 -35097756 - Alu SINE Alu -7 305 228 431 309 20 26 chrX 141876390 141876542 -35097598 + Charlie2 DNA MER1_type 1 151 -2711 446 33 0 16 chrX 141876584 141876645 -35097495 + (TTTTA)n Simple_repeat Simple_repeat 1 60 0 851 95 24 14 chrX 141876645 141876774 -35097366 - L1PA3 LINE L1 -17 6144 6016 230 250 0 31 chrX 141876781 141876845 -35097295 + Charlie2 DNA MER1_type 240 301 -2561 1247 233 109 61 chrX 141876871 141877790 -35096350 + Charlie2 DNA MER1_type 1855 2817 -45 4634 30 11 0 chrX 141877790 141878431 -35095709 - L1PA4 LINE L1 -682 5473 4829 5751 26 0 10 chrX 141878431 141879114 -35095026 + L1PA4 LINE L1 5472 6152 -3 181 234 43 0 chrX 141879409 141879456 -35094684 - MIR3 SINE MIR -48 160 112 581 276 179 31 chrX 141880520 141880872 -35093268 + L2 LINE L2 2824 3227 -86 27 29 0 0 chrX 141880906 141880940 -35093200 + AT_rich Low_complexity Low_complexity 1 34 0 387 73 0 0 chrX 141881620 141881675 -35092465 + (TG)n Simple_repeat Simple_repeat 2 56 0 584 167 9 18 chrX 141881795 141881909 -35092231 - L1P LINE L1 -2027 4119 4007 22 0 0 0 chrX 141882398 141882420 -35091720 + AT_rich Low_complexity Low_complexity 1 22 0 353 280 47 9 chrX 141882596 141882703 -35091437 + L2 LINE L2 3202 3312 -1 2100 116 0 41 chrX 141882897 141883215 -35090925 - AluSc SINE Alu -4 305 1 890 252 23 19 chrX 141883229 141883443 -35090697 - MLT1E LTR MaLR -374 219 5 471 347 42 15 chrX 141883455 141883717 -35090423 - L2 LINE L2 -877 2437 2169 212 322 0 0 chrX 141883784 141883843 -35090297 - L2 LINE L2 -4 3309 3251 7439 30 4 4 chrX 141884402 141885848 -35088292 + L1PA4 LINE L1 4710 6155 0 217 208 0 57 chrX 141885849 141885902 -35088238 + GA-rich Low_complexity Low_complexity 2 51 0 27 0 0 0 chrX 141887080 141887107 -35087033 + AT_rich Low_complexity Low_complexity 1 27 0 305 80 80 0 chrX 141887801 141887851 -35086289 - MLT2A2 LTR ERVL 0 453 400 432 0 0 0 chrX 141887856 141887904 -35086236 + (TA)n Simple_repeat Simple_repeat 1 48 0 2038 174 34 24 chrX 141887966 141888453 -35085687 - MLT2A2 LTR ERVL -53 501 1 198 288 91 0 chrX 141888462 141888528 -35085612 + MIR SINE MIR 112 183 -79 255 288 88 0 chrX 141889588 141889668 -35084472 - MIR SINE MIR -108 154 68 752 266 10 5 chrX 141889672 141889864 -35084276 - MLT1H1 LTR MaLR 0 555 363 1234 63 121 0 chrX 141889865 141890039 -35084101 + MER30 DNA MER1_type 1 195 -35 988 250 13 26 chrX 141890054 141890282 -35083858 - MLT1H1 LTR MaLR -184 371 147 2038 128 0 84 chrX 141890286 141890654 -35083486 - MER1B DNA MER1_type 0 337 1 200 200 175 75 chrX 141890982 141891062 -35083078 + L2 LINE L2 3226 3313 0 303 122 0 0 chrX 141892292 141892341 -35081799 + (CA)n Simple_repeat Simple_repeat 2 50 0 1476 176 147 0 chrX 141892343 141892656 -35081484 - MER46B DNA MER2_type -2 234 1 4710 154 20 39 chrX 141892660 141893536 -35080604 + Tigger1 DNA MER2_type 1 860 -1558 22824 25 3 0 chrX 141893536 141896272 -35077868 - L1PA3 LINE L1 -1142 5004 2262 7496 28 0 11 chrX 141896272 141897414 -35076726 + L1PA3 LINE L1 5021 6152 -3 8944 144 34 16 chrX 141897446 141897589 -35076551 + Tigger1 DNA MER2_type 842 981 -1437 2159 118 0 16 chrX 141897589 141897935 -35076205 + AluSp SINE Alu 1 313 0 8944 144 34 16 chrX 141897935 141899143 -35074997 + Tigger1 DNA MER2_type 981 2226 -192 2047 131 0 13 chrX 141899143 141899449 -35074691 - AluSq SINE Alu -11 302 1 8944 144 34 16 chrX 141899449 141899646 -35074494 + Tigger1 DNA MER2_type 2226 2418 0 201 254 0 0 chrX 141899650 141899705 -35074435 + (TATG)n Simple_repeat Simple_repeat 2 56 0 207 326 0 0 chrX 141899705 141899754 -35074386 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 97 19 0 chrX 141899757 141899860 -35074280 + Tigger1 DNA MER2_type 687 791 -1627 228 326 0 0 chrX 141899879 141899968 -35074172 - L1MC4 LINE L1 -1339 6703 6615 * 236 279 47 0 chrX 141899923 141900009 -35074131 + L1MC4 LINE L1 6614 6703 -1339 * 297 192 0 101 chrX 141899981 141900080 -35074060 - L1MC4 LINE L1 -1339 6703 6615 29 0 0 0 chrX 141900679 141900708 -35073432 + AT_rich Low_complexity Low_complexity 1 29 0 280 302 84 26 chrX 141900901 141901178 -35072962 - L1ME4a LINE L1 -226 5895 5590 2843 87 77 5 chrX 141901597 141901971 -35072169 + MLT2A1 LTR ERVL 1 409 -35 546 16 0 0 chrX 141901971 141902034 -35072106 + (TA)n Simple_repeat Simple_repeat 1 63 0 2843 87 77 5 chrX 141902034 141902073 -35072067 + MLT2A1 LTR ERVL 409 444 0 43417 78 7 6 chrX 141902074 141907723 -35066417 + HERVL-A1 LTR ERVL 2 5654 0 2772 84 36 5 chrX 141907723 141908115 -35066025 + MLT2A1 LTR ERVL 1 404 -40 289 217 0 22 chrX 141908127 141908219 -35065921 - L1MC4 LINE L1 -1339 6703 6614 485 239 0 8 chrX 141908219 141908353 -35065787 + (TA)n Simple_repeat Simple_repeat 2 134 0 402 74 0 0 chrX 141908353 141908407 -35065733 + MLT2A1 LTR ERVL 391 444 0 296 314 128 6 chrX 141908703 141908859 -35065281 - MIR SINE MIR -22 240 66 234 0 0 0 chrX 141909499 141909525 -35064615 + (T)n Simple_repeat Simple_repeat 1 26 0 2547 38 0 0 chrX 141909729 141910020 -35064120 - AluY SINE Alu -20 291 1 522 286 43 6 chrX 141910021 141910182 -35063958 - MIR SINE MIR -71 191 25 33 0 0 0 chrX 141910679 141910712 -35063428 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chrX 141911180 141911200 -35062940 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 378 22 22 chrX 141911339 141911474 -35062666 + HAL1 LINE L1 510 644 -1863 246 325 36 0 chrX 141911480 141911563 -35062577 + MIR3 SINE MIR 82 167 -41 4671 153 20 15 chrX 141911680 141912863 -35061277 + L1MA4A LINE L1 4934 6122 -181 406 252 0 0 chrX 141912867 141912982 -35061158 + L1MA4A LINE L1 6189 6303 0 2240 76 4 4 chrX 141913514 141913791 -35060349 - AluSp SINE Alu -36 277 1 305 275 111 58 chrX 141914278 141914485 -35059655 - MIR SINE MIR -25 237 20 180 393 12 0 chrX 141914576 141914660 -35059480 - L3 LINE CR1 -363 1214 1130 467 190 7 99 chrX 141916111 141916253 -35057887 + MIR3 SINE MIR 73 201 -7 1233 148 100 32 chrX 141916549 141916799 -35057341 + L1MA6 LINE L1 6034 6300 0 203 389 18 26 chrX 141916944 141917170 -35056970 - L2 LINE L2 -654 2660 2437 246 62 0 0 chrX 141917310 141917342 -35056798 + (A)n Simple_repeat Simple_repeat 1 32 0 1362 250 7 10 chrX 141917594 141917902 -35056238 + Tigger5 DNA MER2_type 1 307 -2016 1496 115 0 0 chrX 141917909 141918118 -35056022 + Tigger5 DNA MER2_type 2114 2322 -1 1835 128 170 25 chrX 141918208 141918561 -35055579 - MER4A LTR ERV1 0 664 261 477 155 31 21 chrX 141918561 141918658 -35055482 - MER4A LTR ERV1 -566 98 1 29 78 0 0 chrX 141919093 141919157 -35054983 + AT_rich Low_complexity Low_complexity 1 64 0 839 19 19 0 chrX 141919213 141919316 -35054824 - L1PA4 LINE L1 -3 6152 6048 223 177 32 0 chrX 141920720 141920782 -35053358 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 330 393 0 7 chrX 141920833 141920978 -35053162 + L2 LINE L2 2615 2758 -556 194 370 55 24 chrX 141921060 141921187 -35052953 + L2 LINE L2 2905 3035 -237 214 336 128 38 chrX 141921562 141921773 -35052367 + MIR SINE MIR 1 230 -32 299 289 73 55 chrX 141921800 141922348 -35051792 - L1MEd LINE L1 -938 1552 895 254 263 60 8 chrX 141922391 141922524 -35051616 - L1MEd LINE L1 -5221 898 759 2101 191 31 7 chrX 141922838 141923252 -35050888 - MSTB LTR MaLR -2 424 1 324 0 0 0 chrX 141925300 141925336 -35048804 + (TA)n Simple_repeat Simple_repeat 2 37 0 661 271 53 24 chrX 141925349 141925596 -35048544 + MIR SINE MIR 9 262 0 28 61 0 0 chrX 141925609 141925658 -35048482 + AT_rich Low_complexity Low_complexity 1 49 0 1328 96 5 67 chrX 141926003 141926211 -35047929 + AluY SINE Alu 105 299 -12 946 218 27 0 chrX 141927404 141927592 -35046548 + L1MDa LINE L1 18 210 -6330 732 176 26 4 chrX 141927594 141927850 -35046290 + CT-rich Low_complexity Low_complexity 1 261 0 1059 234 39 39 chrX 141927859 141928145 -35045995 + L1MDa LINE L1 203 488 -6052 849 262 33 65 chrX 141928174 141928457 -35045683 + L1MDa LINE L1 775 1047 -5493 1670 201 42 28 chrX 141928457 141928815 -35045325 + MLT1A1 LTR MaLR 3 365 0 849 262 33 65 chrX 141928815 141928867 -35045273 + L1MDa LINE L1 1047 1099 -5441 748 288 14 23 chrX 141929326 141929541 -35044599 + MER58A DNA MER1_type 12 224 0 983 295 80 24 chrX 141929736 141930667 -35043473 + L1MCc LINE L1 1024 2092 -4851 1938 144 43 27 chrX 141930667 141931036 -35043104 + THE1C LTR MaLR 1 375 0 983 295 80 24 chrX 141931036 141931210 -35042930 + L1MCc LINE L1 2092 2255 -4688 992 267 139 31 chrX 141931232 141931851 -35042289 + L1M4 LINE L1 4166 4851 -1295 397 337 83 0 chrX 141932047 141932216 -35041924 + MIR SINE MIR 54 236 -26 666 225 32 69 chrX 141932248 141932466 -35041674 - LTR16A1 LTR ERVL -1 456 247 418 266 58 29 chrX 141932515 141932654 -35041486 - LTR16A1 LTR ERVL -312 145 3 2597 34 0 0 chrX 141932723 141933019 -35041121 + AluY SINE Alu 12 307 -4 226 238 16 0 chrX 141933767 141933830 -35040310 - MER53 DNA DNA 0 189 126 323 272 149 31 chrX 141933931 141934126 -35040014 + MLT1J LTR MaLR 260 477 -34 208 35 0 0 chrX 141934155 141934184 -35039956 + L2 LINE L2 3285 3313 0 1618 209 29 34 chrX 141934718 141935100 -35039040 + L1M1 LINE L1 15 394 -7171 13972 185 19 19 chrX 141935109 141938896 -35035244 - L1PA11 LINE L1 0 6174 2377 9413 95 14 8 chrX 141938892 141941047 -35033093 - L1PA7 LINE L1 -3 6151 3991 * 2595 290 48 10 chrX 141941090 141942687 -35031453 - L1M4 LINE L1 -4535 1430 1 699 337 22 17 chrX 141942887 141943243 -35030897 + L2 LINE L2 1862 2219 -1095 218 318 159 9 chrX 141943238 141943345 -35030795 - L2 LINE L2 -252 3020 2898 * 649 324 80 0 chrX 141943359 141943597 -35030543 - MIR SINE MIR 0 262 6 263 254 42 59 chrX 141943703 141943821 -35030319 + L2 LINE L2 2948 3063 -209 315 358 49 0 chrX 141944010 141944133 -35030007 + L2 LINE L2 3184 3312 -1 320 326 61 0 chrX 141944176 141944323 -35029817 - MIR SINE MIR -15 247 92 1405 204 7 48 chrX 141944780 141945097 -35029043 - AluJo SINE Alu 0 305 1 2336 128 6 19 chrX 141945762 141946128 -35028012 - THE1B LTR MaLR -3 361 1 9963 105 48 38 chrX 141946128 141947693 -35026447 - THE1B-int LTR MaLR 0 1580 1 2567 124 0 0 chrX 141947710 141948066 -35026074 - THE1B LTR MaLR -8 356 1 363 306 24 24 chrX 141948933 141949057 -35025083 + MER5A DNA MER1_type 65 188 -1 214 301 167 6 chrX 141949419 141949575 -35024565 - L2 LINE L2 -556 2758 2578 22 35 0 0 chrX 141950441 141950470 -35023670 + AT_rich Low_complexity Low_complexity 1 29 0 390 338 186 9 chrX 141950779 141951113 -35023027 + L2 LINE L2 2920 3312 -1 244 338 169 26 chrX 141951125 141951356 -35022784 + L2 LINE L2 2590 2853 -461 30 27 0 0 chrX 141952165 141952202 -35021938 + AT_rich Low_complexity Low_complexity 1 37 0 1384 232 34 57 chrX 141952576 141952959 -35021181 - MLT1B LTR MaLR -16 374 1 914 227 14 0 chrX 141954217 141954424 -35019716 + L1MA10 LINE L1 4406 4615 -1531 323 227 92 55 chrX 141954422 141954585 -35019555 + L1MB3 LINE L1 3172 3340 -4225 * 9455 191 24 15 chrX 141954584 141956692 -35017448 + L1MB3 LINE L1 4063 6190 -1375 6047 117 102 149 chrX 141956707 141958336 -35015804 - pTR5 LTR ERV1 -143 2295 743 3720 196 32 26 chrX 141958337 141958545 -35015595 + L1MB3 LINE L1 6190 6395 -1207 243 61 0 0 chrX 141958545 141958578 -35015562 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 3720 196 32 26 chrX 141958578 141959254 -35014886 + L1MB3 LINE L1 6395 7157 -445 11123 84 6 0 chrX 141959254 141961551 -35012589 + L1PA7 LINE L1 3833 6140 -14 3720 196 32 26 chrX 141961551 141961998 -35012142 + L1MB3 LINE L1 7157 7600 -2 3762 204 25 4 chrX 141962006 141962685 -35011455 + L1MA10 LINE L1 5477 6179 -155 219 69 0 0 chrX 141962685 141962714 -35011426 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3762 204 25 4 chrX 141962714 141962874 -35011266 + L1MA10 LINE L1 6179 6334 0 183 311 30 111 chrX 141963422 141963557 -35010583 - MIR SINE MIR -65 143 20 21 0 0 0 chrX 141964484 141964505 -35009635 + AT_rich Low_complexity Low_complexity 1 21 0 641 131 0 0 chrX 141964852 141964951 -35009189 + L1MB1 LINE L1 5892 5990 -178 297 68 0 0 chrX 141965025 141965069 -35009071 + (TA)n Simple_repeat Simple_repeat 2 45 0 2274 71 0 30 chrX 141965069 141965366 -35008774 - AluY SINE Alu -23 288 1 1117 286 51 84 chrX 141965513 141966275 -35007865 + L2 LINE L2 1261 1997 -1317 1393 120 13 47 chrX 141966280 141966513 -35007627 - AluSg/x SINE Alu -1 311 87 4603 36 0 2 chrX 142066564 142067116 -34907024 + L1PA5 LINE L1 5596 6146 -8 894 110 0 0 chrX 142067118 142067254 -34906886 + L1PB1 LINE L1 6016 6151 0 3108 122 21 14 chrX 142067261 142067776 -34906364 - L1MA3 LINE L1 -182 7542 7024 9589 179 13 14 chrX 142067777 142069709 -34904431 - L1MA3 LINE L1 -927 6638 4708 4394 34 2 0 chrX 142069711 142070242 -34903898 - L1PA4 LINE L1 -2 6153 5622 2147 93 42 3 chrX 142070242 142070575 -34903565 - L1MA3 LINE L1 -4541 3024 2679 541 291 11 37 chrX 142070982 142071171 -34902969 + MIR SINE MIR 79 262 0 2226 187 39 2 chrX 142071387 142071799 -34902341 + MSTB1 LTR MaLR 4 430 -2 26 0 0 0 chrX 142071884 142071910 -34902230 + AT_rich Low_complexity Low_complexity 1 26 0 552 269 90 74 chrX 142072954 142073277 -34900863 + HAL1 LINE L1 1118 1445 -1062 283 244 70 0 chrX 142073297 142073383 -34900757 - L1MC4 LINE L1 -16 8026 7935 380 329 66 50 chrX 142073727 142074162 -34899978 + L1ME3A LINE L1 4567 5012 -1134 2401 113 19 16 chrX 142074162 142074525 -34899615 + THE1B LTR MaLR 1 364 0 380 329 66 50 chrX 142074525 142074588 -34899552 + L1ME3A LINE L1 5012 5073 -1073 3950 248 18 11 chrX 142074716 142075616 -34898524 + L1MA1 LINE L1 17 922 -6643 * 13034 181 27 26 chrX 142075607 142076911 -34897229 + L1MA1 LINE L1 2918 4220 -3501 573 14 0 0 chrX 142076911 142076983 -34897157 - L1PA3 LINE L1 0 6155 6084 13034 181 27 26 chrX 142076983 142080252 -34893888 + L1MA1 LINE L1 4220 7487 -234 630 213 0 16 chrX 142080253 142080380 -34893760 + 7SK RNA RNA 1 125 -68 449 178 0 0 chrX 142080416 142080489 -34893651 + 7SK RNA RNA 121 193 0 1502 124 17 0 chrX 142080489 142080730 -34893410 + L1MA1 LINE L1 7477 7721 0 485 249 121 50 chrX 142080758 142081276 -34892864 + L1ME3A LINE L1 5263 5838 -332 21 36 0 0 chrX 142082356 142082384 -34891756 + AT_rich Low_complexity Low_complexity 1 28 0 635 229 97 0 chrX 142083289 142083433 -34890707 + MER5B DNA MER1_type 1 158 -20 663 297 35 36 chrX 142083435 142083730 -34890410 - LTR16A LTR ERVL 0 491 156 1415 162 2 146 chrX 142084573 142084999 -34889141 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chrX 142085209 142085232 -34888908 + AT_rich Low_complexity Low_complexity 1 23 0 28 61 0 0 chrX 142085589 142085638 -34888502 + AT_rich Low_complexity Low_complexity 1 49 0 490 167 0 17 chrX 142085713 142085788 -34888352 + (TA)n Simple_repeat Simple_repeat 2 76 -43 528 113 0 0 chrX 142085788 142085868 -34888272 + MADE1 DNA Mariner 1 80 0 490 167 0 17 chrX 142085868 142085912 -34888228 + (TA)n Simple_repeat Simple_repeat 76 119 0 21 0 0 0 chrX 142086042 142086063 -34888077 + AT_rich Low_complexity Low_complexity 1 21 0 267 296 117 27 chrX 142086113 142086336 -34887804 + L1MD2 LINE L1 4573 4815 -1331 446 197 43 34 chrX 142086801 142086918 -34887222 - MLT1J2 LTR MaLR -332 118 1 490 330 22 6 chrX 142086933 142087112 -34887028 - MIR SINE MIR -75 187 6 183 156 0 0 chrX 142087128 142087160 -34886980 + (CCA)n Simple_repeat Simple_repeat 3 34 0 180 0 0 0 chrX 142087158 142087178 -34886962 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 22 0 0 0 chrX 142087205 142087227 -34886913 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chrX 142087293 142087318 -34886822 + AT_rich Low_complexity Low_complexity 1 25 0 240 191 61 109 chrX 142087617 142087764 -34886376 + L1MD2 LINE L1 5319 5458 -901 1787 320 90 21 chrX 142087794 142088881 -34885259 - L2 LINE L2 -10 3303 2148 27 29 0 0 chrX 142089175 142089209 -34884931 + AT_rich Low_complexity Low_complexity 1 34 0 254 310 44 26 chrX 142089368 142089481 -34884659 - L2 LINE L2 -208 3064 2950 265 347 40 52 chrX 142090182 142090355 -34883785 + MER5B DNA MER1_type 1 171 -7 227 194 48 0 chrX 142090421 142090483 -34883657 + LTR66 LTR ERVL 405 469 -141 694 234 69 12 chrX 142091292 142091637 -34882503 + L1MD2 LINE L1 5945 6358 -1 185 240 240 0 chrX 142091827 142091902 -34882238 + L2 LINE L2 3220 3312 -1 189 306 235 0 chrX 142091925 142092023 -34882117 + L2 LINE L2 3137 3257 -15 194 171 49 0 chrX 142092454 142092495 -34881645 + L2 LINE L2 1930 1972 -1342 760 314 134 34 chrX 142092621 142093144 -34880996 - MLT1K LTR MaLR -3 585 11 1853 159 131 13 chrX 142093178 142093561 -34880579 + MSTA LTR MaLR 1 428 0 201 258 45 67 chrX 142094584 142094673 -34879467 - L2 LINE L2 0 3272 3186 212 204 32 11 chrX 142094862 142094922 -34879218 - MIR SINE MIR -64 144 82 1878 147 119 33 chrX 142094923 142095428 -34878712 - MLT2A2 LTR ERVL 0 554 2 216 97 0 0 chrX 142096302 142096333 -34877807 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 109 55 18 chrX 142096336 142096391 -34877749 + (TA)n Simple_repeat Simple_repeat 2 58 0 429 81 0 61 chrX 142096547 142096646 -34877494 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 2011 132 0 0 chrX 142096646 142096926 -34877214 - AluSx SINE Alu -32 280 1 207 340 39 26 chrX 142096943 142097096 -34877044 + L2 LINE L2 2326 2480 -834 188 385 0 0 chrX 142097431 142097522 -34876618 + L2 LINE L2 1727 1817 -1497 1024 148 9 28 chrX 142097554 142097875 -34876265 - L1MA9 LINE L1 -22 6290 5786 411 288 51 0 chrX 142097875 142097975 -34876165 + MER2 DNA MER2_type 1 106 -239 251 311 0 0 chrX 142097975 142098036 -34876104 - MER2 DNA MER2_type -3 342 282 186 164 55 41 chrX 142098130 142098203 -34875937 + (CAGAGA)n Simple_repeat Simple_repeat 2 75 0 2650 173 20 11 chrX 142098205 142098911 -34875229 - L1MA9 LINE L1 -511 5780 5071 803 309 127 33 chrX 142098911 142099603 -34874537 + L2 LINE L2 1823 2579 -735 1235 313 13 3 chrX 142100964 142101354 -34872786 - L1M4 LINE L1 -5673 869 476 981 180 12 0 chrX 142101359 142101520 -34872620 - AluJb SINE Alu -22 290 128 1295 225 28 92 chrX 142101541 142102007 -34872133 - L1M4 LINE L1 -6092 450 15 192 233 67 67 chrX 142103092 142103182 -34870958 - L2 LINE L2 -66 3247 3158 232 258 0 0 chrX 142103285 142103347 -34870793 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 361 286 45 15 chrX 142103347 142103480 -34870660 - MIR SINE MIR -22 240 104 863 98 0 16 chrX 142103803 142103926 -34870214 + AluY SINE Alu 190 310 -1 31 26 0 0 chrX 142104226 142104264 -34869876 + AT_rich Low_complexity Low_complexity 1 38 0 32 67 0 0 chrX 142105072 142105132 -34869008 + AT_rich Low_complexity Low_complexity 1 60 0 2128 142 18 5 chrX 142105270 142105651 -34868489 - L1MA8 LINE L1 -12 6279 5894 553 279 53 56 chrX 142105706 142106047 -34868093 - HAL1b LINE L1 -859 489 150 26 0 0 0 chrX 142106334 142106360 -34867780 + AT_rich Low_complexity Low_complexity 1 26 0 1605 314 96 27 chrX 142106374 142107477 -34866663 - L2 LINE L2 -2 3311 2129 1365 228 35 14 chrX 142107477 142107824 -34866316 + MLT1A1 LTR MaLR 1 354 -11 709 343 88 13 chrX 142107833 142108230 -34865910 - L2 LINE L2 -1183 2131 1705 1525 109 0 9 chrX 142109376 142109587 -34864553 + AluSg/x SINE Alu 80 288 -22 480 253 41 0 chrX 142111523 142111693 -34862447 + L1 LINE L1 3394 3570 -2576 3893 275 40 15 chrX 142111699 142113888 -34860252 - L1PBb LINE L1 -3690 3158 961 361 351 128 9 chrX 142113940 142114151 -34859989 - L1PBb LINE L1 -6602 247 12 401 289 0 0 chrX 142114850 142114964 -34859176 - L2 LINE L2 0 3313 3200 891 312 40 65 chrX 142115394 142115920 -34858220 - MLT1K LTR MaLR -63 525 13 270 378 27 14 chrX 142115935 142116083 -34858057 - L2 LINE L2 -224 3048 2899 372 306 98 37 chrX 142116309 142116554 -34857586 + MLT1H LTR MaLR 195 454 -95 270 283 28 9 chrX 142117319 142117425 -34856715 + HAL1 LINE L1 2293 2400 -107 180 300 56 22 chrX 142117763 142117853 -34856287 - L2 LINE L2 -563 2751 2659 1467 193 48 92 chrX 142118674 142119088 -34855052 + MSTD LTR MaLR 1 396 0 317 424 0 0 chrX 142119113 142119283 -34854857 + L3 LINE CR1 115 284 -1293 831 256 101 5 chrX 142119291 142119510 -34854630 + MIR SINE MIR 2 241 -21 25 31 0 0 chrX 142119516 142119548 -34854592 + AT_rich Low_complexity Low_complexity 1 32 0 220 293 238 20 chrX 142119551 142119698 -34854442 + L3 LINE CR1 289 467 -1110 240 35 0 0 chrX 142119812 142119841 -34854299 + (A)n Simple_repeat Simple_repeat 1 29 0 444 353 30 6 chrX 142119942 142120109 -34854031 + MIR SINE MIR 20 190 -72 197 33 33 0 chrX 142121382 142121412 -34852728 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chrX 142122211 142122233 -34851907 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 7758 14 0 0 chrX 142122233 142123540 -34850600 - L1PA3 LINE L1 -16 6139 4833 3010 20 0 0 chrX 142123540 142123896 -34850244 + L1PA3 LINE L1 4475 4830 -1316 2208 78 0 4 chrX 142124727 142125029 -34849111 - AluY SINE Alu 0 301 1 11377 218 15 15 chrX 142126522 142129170 -34844970 - L1P5 LINE L1 -568 5586 2938 2444 113 39 6 chrX 142129170 142129533 -34844607 - THE1C LTR MaLR 0 375 1 9093 137 38 39 chrX 142129533 142130849 -34843291 - THE1C-int LTR MaLR 0 1580 264 1766 83 64 80 chrX 142130849 142131161 -34842979 + AluYa5 SINE Alu 1 307 -4 9093 137 38 39 chrX 142131161 142131425 -34842715 - THE1C-int LTR MaLR -1316 264 1 2517 116 36 3 chrX 142131425 142131788 -34842352 - THE1C LTR MaLR 0 375 1 11377 218 15 15 chrX 142131788 142132376 -34841764 - L1P5 LINE L1 -3213 2941 2360 6231 167 30 5 chrX 142132370 142134406 -34839734 - L1MA1 LINE L1 0 6302 4209 * 17843 122 16 14 chrX 142134406 142137581 -34836559 + MER61B-int LTR ERV1 1992 5217 0 2193 184 7 43 chrX 142137581 142138021 -34836119 + MER61B LTR ERV1 1 424 -1 9036 136 75 2 chrX 142138021 142139465 -34834675 - THE1C-int LTR MaLR -31 1549 1 1028 147 0 3 chrX 142139465 142139742 -34834398 - THE1C LTR MaLR 0 364 1 1199 291 79 15 chrX 142139893 142140361 -34833779 - MLT1E LTR MaLR -2 591 94 377 280 78 39 chrX 142140417 142140778 -34833362 - L1M4 LINE L1 -2177 3969 3595 22 35 0 0 chrX 142141012 142141041 -34833099 + AT_rich Low_complexity Low_complexity 1 29 0 3541 217 35 52 chrX 142141199 142142599 -34831541 - L1MCb LINE L1 -4852 1193 37 341 271 90 21 chrX 142142663 142142807 -34831333 - L1M4 LINE L1 -3103 3043 2890 369 308 89 69 chrX 142142841 142143493 -34830647 - L1M4 LINE L1 -3352 2794 2130 1743 192 6 12 chrX 142143952 142144295 -34829845 - MER2 DNA MER2_type -3 341 1 438 296 63 15 chrX 142144360 142144566 -34829574 - HAL1b LINE L1 -666 682 467 2089 120 11 0 chrX 142144796 142145079 -34829061 - AluSx SINE Alu -26 286 1 1433 259 88 30 chrX 142145160 142145686 -34828454 + MLT1F1 LTR MaLR 1 556 -11 1591 222 26 28 chrX 142145894 142146246 -34827894 + MLT1A1 LTR MaLR 1 351 -14 205 152 0 0 chrX 142146335 142146368 -34827772 + (TTG)n Simple_repeat Simple_repeat 1 33 0 378 203 14 0 chrX 142147327 142147401 -34826739 - MER45A DNA AcHobo -1 177 103 1354 239 175 14 chrX 142147529 142147884 -34826256 - MER45C DNA AcHobo -541 412 1 2384 225 37 104 chrX 142148118 142148324 -34825816 + L1MD2 LINE L1 4925 5143 -1216 2367 63 0 7 chrX 142148324 142148632 -34825508 + AluY SINE Alu 1 306 0 2384 225 37 104 chrX 142148632 142148907 -34825233 + L1MD2 LINE L1 5143 5435 -924 355 115 0 0 chrX 142148907 142148959 -34825181 - MADE1 DNA Mariner -28 52 1 2384 225 37 104 chrX 142148959 142149393 -34824747 + L1MD2 LINE L1 5435 5897 -462 2645 93 0 0 chrX 142149393 142149748 -34824392 - THE1A LTR MaLR 0 355 1 10747 127 3 1 chrX 142149750 142151324 -34822816 - THE1A-int LTR MaLR -2 1578 1 2524 104 6 8 chrX 142151324 142151680 -34822460 - THE1A LTR MaLR 0 355 1 2384 225 37 104 chrX 142151680 142151726 -34822414 + L1MD2 LINE L1 5897 5945 -414 1910 109 20 24 chrX 142151726 142152020 -34822120 + AluY SINE Alu 1 293 -18 2384 225 37 104 chrX 142152020 142152546 -34821594 + L1MD2 LINE L1 5945 6355 -4 184 357 87 16 chrX 142153100 142153226 -34820914 - L2 LINE L2 -19 3294 3160 383 251 101 45 chrX 142153242 142153421 -34820719 + MIR SINE MIR 74 262 0 543 326 20 31 chrX 142153680 142153876 -34820264 + MIR SINE MIR 42 235 -27 2128 137 30 24 chrX 142154479 142154852 -34819288 - THE1C LTR MaLR 0 375 1 335 184 4 80 chrX 142154995 142155120 -34819020 - MER41A LTR ERV1 -11 519 401 2640 127 11 16 chrX 142155120 142155554 -34818586 + L1MA3 LINE L1 5826 6257 -48 387 0 0 0 chrX 142155568 142155611 -34818529 + (TG)n Simple_repeat Simple_repeat 2 44 0 1721 230 9 28 chrX 142155624 142156046 -34818094 - MER41B LTR ERV1 -107 528 115 186 71 0 0 chrX 142156698 142156726 -34817414 + (TA)n Simple_repeat Simple_repeat 2 29 0 455 209 76 0 chrX 142156726 142156831 -34817309 - MER3 DNA MER1_type -87 122 10 2012 152 21 24 chrX 142157022 142157398 -34816742 + THE1C LTR MaLR 1 375 0 8629 148 42 30 chrX 142157398 142158959 -34815181 + THE1C-int LTR MaLR 1 1580 0 2108 150 8 24 chrX 142158959 142159340 -34814800 + THE1C LTR MaLR 1 375 0 201 39 0 0 chrX 142159480 142159506 -34814634 + (CA)n Simple_repeat Simple_repeat 1 26 0 206 268 71 0 chrX 142159516 142159572 -34814568 - MER5A DNA MER1_type 0 189 130 326 366 55 22 chrX 142160312 142160495 -34813645 - MIR SINE MIR -10 252 64 2247 84 0 0 chrX 142160640 142160915 -34813225 - AluSx SINE Alu -21 291 17 15892 194 60 11 chrX 142160921 142164937 -34809203 + L1M1 LINE L1 320 4534 -3031 733 239 57 0 chrX 142165111 142165270 -34808870 - MER5A DNA MER1_type -1 188 21 458 270 0 0 chrX 142165387 142165487 -34808653 + AluJ/FLAM SINE Alu 1 100 -212 3240 116 47 4 chrX 142165487 142165977 -34808163 - MER9 LTR ERVK 0 511 1 1903 108 0 25 chrX 142165991 142166269 -34807871 - MLT2A1 LTR ERVL 0 444 174 4593 73 2 0 chrX 142166269 142166857 -34807283 - HERVL LTR ERVL -1887 3767 3179 1312 71 0 0 chrX 142166857 142167026 -34807114 - MLT2A1 LTR ERVL -275 169 1 385 279 36 9 chrX 142167084 142167195 -34806945 + MER81 DNA DNA 1 114 0 348 332 139 10 chrX 142167411 142167619 -34806521 + MIR SINE MIR 20 254 -8 195 42 0 0 chrX 142167776 142167800 -34806340 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 263 180 0 33 chrX 142168193 142168254 -34805886 + L1MA6 LINE L1 6236 6294 -6 713 235 26 108 chrX 142169372 142169759 -34804381 - MLT1B LTR MaLR 0 390 36 11233 237 34 21 chrX 142169904 142169946 -34804194 - L1MCa LINE L1 -809 6132 6092 4011 117 17 8 chrX 142169946 142170586 -34803554 - L1MA1 LINE L1 0 6302 5657 11233 237 34 21 chrX 142170586 142174905 -34799235 - L1MCa LINE L1 -849 6092 1529 216 0 0 0 chrX 142174916 142174940 -34799200 + (A)n Simple_repeat Simple_repeat 1 24 0 2115 116 0 0 chrX 142175025 142175317 -34798823 + AluSx SINE Alu 1 292 -20 353 257 26 26 chrX 142175866 142175979 -34798161 - L1MCa LINE L1 -5983 440 328 415 254 49 42 chrX 142176024 142176166 -34797974 - MER3 DNA MER1_type -60 149 7 266 282 8 40 chrX 142176175 142176299 -34797841 - L1MCa LINE L1 -6112 311 192 234 136 0 0 chrX 142176301 142176345 -34797795 + (TC)n Simple_repeat Simple_repeat 1 44 0 219 278 0 0 chrX 142176729 142176783 -34797357 - MIR3 SINE MIR -2 206 153 644 294 8 65 chrX 142176879 142177127 -34797013 - MLT1F LTR MaLR -306 236 3 1254 289 78 31 chrX 142177377 142177958 -34796182 + L1MC4a LINE L1 5322 5929 -1879 1431 242 38 22 chrX 142178123 142178491 -34795649 + MLT1A2 LTR MaLR 1 374 0 25 0 0 0 chrX 142179006 142179031 -34795109 + AT_rich Low_complexity Low_complexity 1 25 0 207 306 31 51 chrX 142179506 142179604 -34794536 - L2 LINE L2 -211 3061 2966 2130 114 0 0 chrX 142180107 142180429 -34793711 + AluSx SINE Alu 3 324 0 324 0 0 0 chrX 142181273 142181309 -34792831 + (TG)n Simple_repeat Simple_repeat 2 37 0 781 327 48 38 chrX 142181316 142181817 -34792323 - L2 LINE L2 -954 2360 1855 396 304 70 25 chrX 142183750 142183908 -34790232 + MIR SINE MIR 84 248 -14 249 361 0 0 chrX 142184086 142184158 -34789982 + L2 LINE L2 3201 3272 0 26 30 0 0 chrX 142184414 142184447 -34789693 + AT_rich Low_complexity Low_complexity 1 33 0 253 375 118 34 chrX 142185011 142185477 -34788663 + L2 LINE L2 2460 2964 -350 294 256 56 0 chrX 142186649 142186739 -34787401 - MIR SINE MIR -57 205 111 709 157 0 183 chrX 142187260 142187495 -34786645 - 7SK RNA RNA 0 193 2 1530 217 130 44 chrX 142187857 142188361 -34785779 - MLT1F1 LTR MaLR 0 567 1 562 256 32 68 chrX 142188539 142188758 -34785382 + MER58C DNA MER1_type 1 211 -4 198 204 163 0 chrX 142189632 142189681 -34784459 + MER5A DNA MER1_type 111 167 -22 249 355 79 19 chrX 142190335 142190549 -34783591 + MIR SINE MIR 36 262 0 196 236 100 109 chrX 142191447 142191557 -34782583 + L2 LINE L2 3156 3264 -8 437 77 11 55 chrX 142191989 142192080 -34782060 + (TTCCC)n Simple_repeat Simple_repeat 4 90 0 2274 165 24 3 chrX 142192308 142192690 -34781450 - MLT1B LTR MaLR 0 390 1 276 325 41 32 chrX 142192691 142192814 -34781326 - MIR3 SINE MIR -70 138 15 418 305 117 42 chrX 142193081 142193415 -34780725 + MLT1J1 LTR MaLR 66 424 -22 24 85 0 0 chrX 142194472 142194531 -34779609 + AT_rich Low_complexity Low_complexity 1 59 0 295 376 38 0 chrX 142194815 142194948 -34779192 + L3b LINE CR1 1352 1489 -94 493 325 47 5 chrX 142196024 142196215 -34777925 - MIR SINE MIR -6 256 58 905 295 131 51 chrX 142196396 142196962 -34777178 + L2 LINE L2 2367 2977 -337 327 337 25 25 chrX 142196979 142197255 -34776885 + L1ME4a LINE L1 5579 5854 -267 1298 187 42 4 chrX 142197794 142198150 -34775990 + MSTB LTR MaLR 1 426 0 8461 188 15 11 chrX 142198150 142199796 -34774344 + MSTB-int LTR MaLR 1 1651 0 2027 172 86 8 chrX 142199796 142200191 -34773949 + MSTB LTR MaLR 1 426 0 525 295 37 46 chrX 142200606 142200823 -34773317 - MIR SINE MIR -7 255 41 817 219 0 41 chrX 142201392 142201588 -34772552 + MER5A DNA MER1_type 2 189 0 345 47 0 0 chrX 142201858 142201901 -34772239 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 190 278 37 0 chrX 142202774 142202828 -34771312 + MIR SINE MIR 105 160 -102 486 285 113 60 chrX 142203113 142203282 -34770858 - L3 LINE CR1 -41 1536 1345 2005 169 32 8 chrX 142203282 142203661 -34770479 + MLT1B LTR MaLR 3 390 0 486 285 113 60 chrX 142203661 142203775 -34770365 - L3 LINE CR1 -232 1345 1238 1911 92 4 0 chrX 142203833 142204082 -34770058 - AluSp SINE Alu -63 250 1 428 229 65 33 chrX 142204230 142204383 -34769757 - L3 LINE CR1 -794 783 626 257 435 6 6 chrX 142204574 142204735 -34769405 + L2 LINE L2 2898 3058 -214 354 61 0 0 chrX 142204864 142204913 -34769227 + (CA)n Simple_repeat Simple_repeat 1 49 0 516 277 77 73 chrX 142204918 142205218 -34768922 - MLT1J1 LTR MaLR -145 301 1 441 314 68 11 chrX 142205218 142205409 -34768731 - MIR SINE MIR -60 202 1 264 149 0 0 chrX 142205414 142205461 -34768679 + (CA)n Simple_repeat Simple_repeat 2 48 0 218 228 272 0 chrX 142205487 142205579 -34768561 + L2 LINE L2 3195 3311 -2 4290 144 35 6 chrX 142205614 142206327 -34767813 - L1PA16 LINE L1 -9 6157 5424 271 395 87 0 chrX 142206541 142206736 -34767404 - L3 LINE CR1 -1218 359 148 199 154 19 19 chrX 142207584 142207636 -34766504 + (TA)n Simple_repeat Simple_repeat 1 52 0 240 188 0 0 chrX 142208125 142208173 -34765967 + (TG)n Simple_repeat Simple_repeat 1 48 0 310 271 68 13 chrX 142208456 142208612 -34765528 - L1ME3A LINE L1 -294 5876 5707 564 15 0 0 chrX 142209688 142209753 -34764387 + (TC)n Simple_repeat Simple_repeat 1 65 0 4620 212 49 27 chrX 142209753 142211953 -34762187 - L1 LINE L1 -2102 5463 3167 2213 27 0 0 chrX 142211949 142212207 -34761933 - L1PA5 LINE L1 -306 5848 5591 * 391 82 0 0 chrX 142212205 142212254 -34761886 + L1PA5 LINE L1 5545 5593 -561 * 1553 131 7 84 chrX 142212250 142212671 -34761469 - L1PB1 LINE L1 -116 6035 5693 7676 201 14 12 chrX 142212686 142214421 -34759719 - L1PB1 LINE L1 -1362 4784 3046 771 261 47 9 chrX 142214548 142214759 -34759381 - MER58A DNA MER1_type 0 224 6 631 24 126 0 chrX 142214853 142215139 -34759001 + (TA)n Simple_repeat Simple_repeat 1 322 0 744 239 30 57 chrX 142215947 142216326 -34757814 + L1MC5 LINE L1 6886 7252 -733 326 268 121 15 chrX 142216434 142216632 -34757508 + L1MC5 LINE L1 7260 7478 -483 447 291 40 33 chrX 142216721 142217023 -34757117 + L1MC5 LINE L1 7608 7911 -50 2290 114 0 0 chrX 142217652 142217958 -34756182 - AluSx SINE Alu -6 306 1 265 293 47 28 chrX 142218280 142218386 -34755754 + L2 LINE L2 3206 3313 0 211 232 43 87 chrX 142218415 142218484 -34755656 - MIR SINE MIR -148 114 49 216 0 0 0 chrX 142219184 142219208 -34754932 + (TAA)n Simple_repeat Simple_repeat 1 24 0 479 214 62 36 chrX 142219691 142219803 -34754337 + L2 LINE L2 3194 3308 -5 335 363 130 31 chrX 142220037 142220459 -34753681 + L2 LINE L2 2809 3272 0 757 341 37 33 chrX 142220862 142221270 -34752870 + LTR33 LTR ERVL 1 413 -108 1871 183 22 8 chrX 142221270 142221630 -34752510 + MLT1A1 LTR MaLR 1 365 0 757 341 37 33 chrX 142221630 142221737 -34752403 + LTR33 LTR ERVL 413 518 -3 396 277 0 15 chrX 142221817 142221947 -34752193 + MER104 DNA Tc2 28 155 -25 2138 151 79 17 chrX 142222108 142222511 -34751629 + MSTA LTR MaLR 1 428 0 1145 206 97 37 chrX 142222693 142223042 -34751098 - MLT1A2 LTR MaLR -4 370 1 2048 223 14 5 chrX 142223042 142223460 -34750680 - MLT1A2-int LTR MaLR 0 1735 1314 195 287 96 21 chrX 142224012 142224106 -34750034 - L2 LINE L2 -66 3247 3147 212 262 0 0 chrX 142224226 142224268 -34749872 - L2 LINE L2 -345 2968 2927 1068 193 11 0 chrX 142224362 142224543 -34749597 + MER20 DNA MER1_type 2 184 -35 222 271 42 0 chrX 142224823 142224871 -34749269 + L2 LINE L2 3234 3283 -30 989 316 231 9 chrX 142225214 142226094 -34748046 - L2 LINE L2 -584 2730 1656 226 314 23 0 chrX 142226495 142226581 -34747559 - L1MC4 LINE L1 -1341 6701 6614 * 233 291 0 23 chrX 142226509 142226595 -34747545 + L1MC4 LINE L1 6614 6697 -1345 235 218 51 0 chrX 142226598 142226676 -34747464 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 249 261 0 43 chrX 142226677 142226769 -34747371 + L1MC4 LINE L1 6614 6701 -1341 200 244 0 0 chrX 142226770 142226811 -34747329 + (TA)n Simple_repeat Simple_repeat 1 41 0 320 283 0 22 chrX 142226832 142226924 -34747216 + L1MC4 LINE L1 6614 6703 -1339 351 0 0 0 chrX 142227114 142227153 -34746987 + (TA)n Simple_repeat Simple_repeat 2 40 0 183 152 0 0 chrX 142227246 142227292 -34746848 + (TA)n Simple_repeat Simple_repeat 2 47 0 226 94 0 0 chrX 142227310 142227342 -34746798 + MLT2A1 LTR ERVL 413 444 0 551 274 106 71 chrX 142227617 142228167 -34745973 + L1ME4a LINE L1 5549 6117 -4 219 178 0 22 chrX 142228402 142228447 -34745693 + CT-rich Low_complexity Low_complexity 1 44 0 4179 134 234 74 chrX 142228854 142230178 -34743962 - pTR5 LTR ERV1 0 2438 743 305 316 0 0 chrX 142230185 142230261 -34743879 + MIR SINE MIR 67 142 -66 4336 169 8 10 chrX 142230263 142231091 -34743049 - L1MA6 LINE L1 -3 6297 5471 2316 147 1 0 chrX 142231091 142231559 -34742581 + L1MA6 LINE L1 4982 5450 -744 270 260 0 26 chrX 142231560 142231637 -34742503 + MIR3 SINE MIR 133 207 -1 363 44 0 0 chrX 142231961 142232006 -34742134 + (TG)n Simple_repeat Simple_repeat 1 45 0 18355 176 30 36 chrX 142232270 142235623 -34738517 + L1M4 LINE L1 18 3348 -4217 2675 45 0 0 chrX 142235623 142235932 -34738208 + AluY SINE Alu 1 309 -2 18355 176 30 36 chrX 142235932 142236244 -34737896 + L1M4 LINE L1 3348 3660 -3905 5172 116 8 16 chrX 142236281 142237102 -34737038 + L1MA2 LINE L1 5490 6304 0 478 146 0 78 chrX 142237119 142237222 -34736918 - L1MA6 LINE L1 -1161 4985 4891 2351 68 7 10 chrX 142237245 142237555 -34736585 + AluY SINE Alu 1 309 -2 235 281 0 0 chrX 142237634 142237691 -34736449 + (TG)n Simple_repeat Simple_repeat 2 58 0 2608 43 0 3 chrX 142237773 142238077 -34736063 - AluY SINE Alu -8 303 1 186 229 73 62 chrX 142238225 142238321 -34735819 - L3 LINE CR1 -482 1095 999 575 273 18 18 chrX 142239315 142239480 -34734660 - MER97b DNA MER1_type? -888 165 1 336 83 0 0 chrX 142239763 142239811 -34734329 + (CA)n Simple_repeat Simple_repeat 1 48 0 830 160 34 0 chrX 142240041 142240216 -34733924 + L1 LINE L1 5117 5297 -849 599 249 68 36 chrX 142242325 142242784 -34731356 + L1MEc LINE L1 873 5538 -2339 474 215 145 0 chrX 142242785 142242971 -34731169 + L1M4 LINE L1 5185 5397 -2168 2510 134 19 5 chrX 142242999 142243722 -34730418 - THE1C-int LTR MaLR -807 773 1 2137 143 5 21 chrX 142243724 142244101 -34730039 - THE1C LTR MaLR -2 373 3 17732 44 2 0 chrX 142244967 142247883 -34726257 - L1PA5 LINE L1 -4 6150 3179 423 316 84 8 chrX 142248327 142248577 -34725563 + HAL1b LINE L1 247 515 -833 280 278 71 78 chrX 142248577 142248809 -34725331 + MLT1J2 LTR MaLR 1 242 -269 2674 90 3 0 chrX 142248809 142249163 -34724977 + THE1A LTR MaLR 1 355 0 280 278 71 78 chrX 142249163 142249209 -34724931 + MLT1J2 LTR MaLR 242 287 -224 2334 214 15 11 chrX 142249248 142249974 -34724166 + L1M4 LINE L1 6458 7185 -408 824 257 55 15 chrX 142249992 142250264 -34723876 + MLT1C LTR MaLR 177 459 -8 228 283 0 0 chrX 142250278 142250331 -34723809 + MLT1J LTR MaLR 286 338 -173 1503 213 66 29 chrX 142250395 142250804 -34723336 + Charlie8 DNA MER1_type 482 905 -1512 559 300 48 4 chrX 142250889 142251119 -34723021 + Charlie8 DNA MER1_type 1777 2016 -401 664 237 75 0 chrX 142251291 142251464 -34722676 + Charlie4 DNA MER1_type 42 227 -1734 342 283 111 0 chrX 142252456 142252555 -34721585 + L2 LINE L2 3203 3312 -1 233 148 0 19 chrX 142252936 142252990 -34721150 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 2385 100 0 0 chrX 142253963 142254272 -34719868 - AluSx SINE Alu -3 309 1 405 208 31 0 chrX 142254295 142254391 -34719749 + MLT2B2 LTR ERVL 1 99 -416 2718 149 13 4 chrX 142254397 142254854 -34719286 - L1PA16 LINE L1 -9 6157 5697 383 248 0 0 chrX 142254854 142254959 -34719181 + L1P LINE L1 3111 3215 -2931 2682 84 19 8 chrX 142254966 142255333 -34718807 + MLT2A1 LTR ERVL 1 371 -73 233 238 20 14 chrX 142255338 142255442 -34718698 + L1MC4 LINE L1 1992 6983 -1339 372 93 0 0 chrX 142255445 142255499 -34718641 + MLT2A1 LTR ERVL 391 444 0 1777 209 62 19 chrX 142255499 142255968 -34718172 + L1 LINE L1 3217 3705 -2441 756 222 18 134 chrX 142255968 142256310 -34717830 + MLT2D LTR ERVL 102 403 -11 24 32 0 0 chrX 142257011 142257042 -34717098 + AT_rich Low_complexity Low_complexity 1 31 0 182 128 26 0 chrX 142258219 142258258 -34715882 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 1857 146 4 4 chrX 142258775 142259056 -34715084 + AluSq SINE Alu 1 281 -32 935 238 6 0 chrX 142259057 142259238 -34714902 - MER58A DNA MER1_type -36 188 7 182 37 37 0 chrX 142259280 142259307 -34714833 + (CA)n Simple_repeat Simple_repeat 1 28 0 2002 124 13 0 chrX 142260987 142261286 -34712854 + AluSg SINE Alu 4 306 -4 527 290 0 25 chrX 142261558 142261720 -34712420 - MIR SINE MIR 0 262 105 525 289 0 0 chrX 142261721 142261849 -34712291 - MIR SINE MIR -11 251 124 2343 94 0 0 chrX 142262126 142262423 -34711717 + AluSg SINE Alu 1 297 -13 1851 35 0 0 chrX 142263013 142263243 -34710897 - L1PA3 LINE L1 -625 5530 5301 5248 30 0 5 chrX 142263243 142263862 -34710278 + L1PA3 LINE L1 5535 6155 0 232 286 9 57 chrX 142264259 142264364 -34709776 - LTR67 LTR ERVL 0 557 458 385 286 86 46 chrX 142265042 142265217 -34708923 + MIR SINE MIR 74 255 -7 430 274 98 78 chrX 142266421 142266625 -34707515 + MER63A DNA MER1_type 3 210 0 333 0 0 0 chrX 142266640 142266677 -34707463 + (CA)n Simple_repeat Simple_repeat 2 38 0 2025 124 0 0 chrX 142267630 142267947 -34706193 + AluSq SINE Alu 1 317 0 389 304 157 23 chrX 142268126 142268343 -34705797 - MIR SINE MIR 0 262 17 22 0 0 0 chrX 142268886 142268908 -34705232 + AT_rich Low_complexity Low_complexity 1 22 0 376 284 118 17 chrX 142269581 142269765 -34704375 - MIR SINE MIR -31 231 32 497 302 75 24 chrX 142269795 142270007 -34704133 - MIR SINE MIR -26 236 14 27 49 0 0 chrX 142271310 142271351 -34702789 + AT_rich Low_complexity Low_complexity 1 41 0 2166 118 10 0 chrX 142271352 142271657 -34702483 - AluSq SINE Alu -5 308 1 1118 294 30 8 chrX 142273779 142274180 -34699960 + L1PB3 LINE L1 2664 3073 -3073 7992 191 11 9 chrX 142274200 142276802 -34697338 + L1PB3 LINE L1 3541 6147 -7 3051 152 7 43 chrX 142276831 142277418 -34696722 + L1PA16 LINE L1 5593 6158 -8 26 50 0 0 chrX 142277606 142277646 -34696494 + AT_rich Low_complexity Low_complexity 1 40 0 528 93 0 0 chrX 142277769 142277844 -34696296 + (TCCC)n Simple_repeat Simple_repeat 2 76 0 2066 124 13 0 chrX 142277848 142278155 -34695985 - AluSx SINE Alu -1 311 1 1936 171 116 10 chrX 142278742 142279129 -34695011 - MSTA LTR MaLR 0 428 1 8703 147 19 47 chrX 142279129 142280753 -34693387 - MSTA-int LTR MaLR 0 1580 3 2050 155 116 10 chrX 142280755 142281142 -34692998 - MSTA LTR MaLR 0 428 1 21 36 0 0 chrX 142281229 142281257 -34692883 + AT_rich Low_complexity Low_complexity 1 28 0 272 317 0 0 chrX 142282141 142282223 -34691917 + CT-rich Low_complexity Low_complexity 1 82 0 204 265 111 26 chrX 142282382 142282499 -34691641 - L3 LINE CR1 -320 1257 1131 198 103 0 0 chrX 142282630 142282659 -34691481 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2187 94 7 3 chrX 142282733 142283032 -34691108 - AluSx SINE Alu -12 300 1 199 316 38 25 chrX 142283034 142283130 -34691010 - MER5A DNA MER1_type -74 115 8 11862 225 69 34 chrX 142283635 142287086 -34687054 + L1PA14 LINE L1 1521 5085 -1376 2878 148 2 0 chrX 142287087 142287566 -34686574 + L1PA14 LINE L1 5997 6476 0 22 0 0 0 chrX 142287668 142287690 -34686450 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 142287985 142288008 -34686132 + AT_rich Low_complexity Low_complexity 1 23 0 470 151 0 0 chrX 142288048 142288121 -34686019 + AluS SINE Alu 1 73 -240 544 246 0 0 chrX 142288457 142288567 -34685573 - MER81 DNA DNA -4 110 1 375 300 50 57 chrX 142288635 142288775 -34685365 - L2 LINE L2 0 3272 3134 251 326 37 44 chrX 142288887 142289022 -34685118 - L2 LINE L2 -444 2870 2737 33 25 0 0 chrX 142290137 142290177 -34683963 + AT_rich Low_complexity Low_complexity 1 40 0 221 280 256 8 chrX 142290531 142290656 -34683484 + MIR SINE MIR 102 257 -5 1761 156 65 11 chrX 142290928 142291280 -34682860 + THE1C LTR MaLR 3 373 -2 9091 143 7 45 chrX 142291284 142292923 -34681217 + THE1C-int LTR MaLR 3 1580 0 1565 186 67 28 chrX 142292923 142293284 -34680856 + THE1C LTR MaLR 1 375 0 960 290 85 14 chrX 142294342 142294706 -34679434 - MLT1H LTR MaLR -9 540 151 660 315 50 0 chrX 142294706 142294906 -34679234 - MER63A DNA MER1_type 0 210 1 400 301 60 0 chrX 142294906 142295039 -34679101 - MLT1H LTR MaLR -391 158 18 239 299 26 13 chrX 142295238 142295315 -34678825 - MIR SINE MIR -111 151 74 201 388 101 8 chrX 142297028 142297157 -34676983 + MIR3 SINE MIR 3 143 -65 276 275 28 56 chrX 142297350 142297492 -34676648 - L1MEd LINE L1 -4888 1243 1106 305 284 19 19 chrX 142297525 142297680 -34676460 - L1MEd LINE L1 -5040 1079 925 * 5596 260 65 38 chrX 142297670 142299922 -34674218 - L1MCb LINE L1 -818 5746 3555 2689 187 7 13 chrX 142299922 142300472 -34673668 - L1MA4A LINE L1 -14 6289 5743 5596 260 65 38 chrX 142300472 142302071 -34672069 - L1MCb LINE L1 -3009 3555 2000 261 98 0 0 chrX 142302071 142302112 -34672028 + (TA)n Simple_repeat Simple_repeat 1 41 0 5596 260 65 38 chrX 142302112 142303266 -34670874 - L1MCb LINE L1 -4564 2000 333 2187 273 19 28 chrX 142304548 142305124 -34669016 + L1 LINE L1 576 1146 -5507 1068 138 19 34 chrX 142305124 142305333 -34668807 - THE1C LTR MaLR 0 375 184 6926 192 24 3 chrX 142305333 142306818 -34667322 + L1 LINE L1 4219 5734 -998 1194 51 6 40 chrX 142306820 142306996 -34667144 + THE1-int LTR MaLR 1406 1575 -5 1535 190 41 41 chrX 142307001 142307365 -34666775 + THE1B LTR MaLR 1 364 0 1660 176 9 3 chrX 142307365 142307690 -34666450 + L1MA2 LINE L1 5978 6304 0 3602 220 36 51 chrX 142307693 142308843 -34665297 + L1 LINE L1 3035 4166 -1980 813 264 23 67 chrX 142308902 142309201 -34664939 - L2 LINE L2 -7 3306 3021 196 295 131 0 chrX 142309228 142309289 -34664851 + L3 LINE CR1 1502 1570 -7 453 295 12 24 chrX 142309671 142309837 -34664303 + MER5A DNA MER1_type 26 189 0 266 295 32 32 chrX 142309863 142309958 -34664182 + MIR3 SINE MIR 107 201 -7 292 311 129 23 chrX 142310247 142310379 -34663761 + MIR SINE MIR 7 152 -110 304 344 22 77 chrX 142310751 142311062 -34663078 - L2 LINE L2 -101 3171 2878 314 231 58 19 chrX 142311395 142311499 -34662641 + MER20B DNA MER1_type 1 108 -675 925 168 18 0 chrX 142311833 142312000 -34662140 + THE1C LTR MaLR 3 172 -203 12864 27 1 0 chrX 142312010 142314298 -34659842 - L1PA3 LINE L1 -3 6152 3862 19227 35 0 0 chrX 142314298 142316639 -34657501 + L1PA3 LINE L1 1510 3850 -2296 1338 126 27 18 chrX 142316639 142316862 -34657278 + THE1C LTR MaLR 151 375 0 9356 124 55 11 chrX 142316862 142318375 -34655765 + THE1C-int LTR MaLR 1 1580 0 2469 110 5 26 chrX 142318375 142318758 -34655382 + THE1C LTR MaLR 1 375 0 21 0 0 0 chrX 142320547 142320568 -34653572 + AT_rich Low_complexity Low_complexity 1 21 0 275 343 7 63 chrX 142321592 142321735 -34652405 - MIR SINE MIR -11 251 117 1459 97 5 5 chrX 142321793 142321999 -34652141 + L1PA10 LINE L1 5958 6163 -5 38 0 0 0 chrX 142322167 142322205 -34651935 + AT_rich Low_complexity Low_complexity 1 38 0 200 211 0 19 chrX 142322213 142322265 -34651875 + (AATAG)n Simple_repeat Simple_repeat 4 54 0 338 353 8 0 chrX 142323075 142323194 -34650946 + MIR3 SINE MIR 78 197 -11 1248 117 27 0 chrX 142323517 142323705 -34650435 - MER75B DNA T2_type 0 243 51 2083 117 3 0 chrX 142323717 142324008 -34650132 - AluSx SINE Alu -20 292 1 820 153 0 3 chrX 142324632 142324835 -34649305 - MER75 DNA T2_type -250 264 1 584 351 62 30 chrX 142324849 142325316 -34648824 - L2 LINE L2 -3 3310 2829 754 318 12 12 chrX 142325326 142325568 -34648572 - MIR SINE MIR -6 256 15 244 411 69 0 chrX 142325594 142325769 -34648371 - L2 LINE L2 -495 2819 2633 284 219 14 27 chrX 142325811 142325884 -34648256 + MLT1L LTR MaLR 2 73 -542 4506 212 45 17 chrX 142325933 142327080 -34647060 - Charlie1a DNA MER1_type -7 1448 271 5852 46 0 0 chrX 142327110 142327827 -34646313 - L1PA4 LINE L1 0 6155 5439 1395 39 0 0 chrX 142327827 142328007 -34646133 + L1P LINE L1 5208 5387 -759 777 200 184 78 chrX 142328007 142328262 -34645878 - Charlie1a DNA MER1_type -1173 282 1 527 333 171 33 chrX 142328306 142328915 -34645225 - L2 LINE L2 -1521 1793 1101 704 350 70 12 chrX 142328923 142329323 -34644817 - L2 LINE L2 -2354 960 538 629 257 149 20 chrX 142329517 142329859 -34644281 - L1ME4a LINE L1 -153 5968 5583 1595 65 0 14 chrX 142330268 142330483 -34643657 + L1PA7 LINE L1 5939 6150 -4 742 193 108 0 chrX 142330487 142330653 -34643487 + L1ME LINE L1 5423 5606 -558 38 81 0 0 chrX 142330662 142330749 -34643391 + AT_rich Low_complexity Low_complexity 1 87 0 703 164 57 14 chrX 142330755 142330895 -34643245 - MER106B DNA MER1_type -908 151 6 1489 262 111 38 chrX 142331007 142331584 -34642556 + MLT1E3 LTR MaLR 6 624 0 1482 215 33 71 chrX 142331663 142332115 -34642025 + MER31B LTR ERV1 1 435 -31 313 190 60 30 chrX 142332342 142332442 -34641698 - L1ME4a LINE L1 -35 6086 5984 21 0 0 0 chrX 142332517 142332538 -34641602 + AT_rich Low_complexity Low_complexity 1 21 0 1255 253 35 151 chrX 142332564 142333567 -34640573 - L2 LINE L2 -71 3242 2360 291 263 21 21 chrX 142333561 142333656 -34640484 + L2 LINE L2 2797 2891 -423 * 282 298 57 32 chrX 142333667 142333791 -34640349 - L2 LINE L2 -1133 2181 2055 329 288 87 53 chrX 142333965 142334323 -34639817 - L1ME LINE L1 -439 5682 5313 330 236 146 32 chrX 142334944 142335067 -34639073 - L1ME4a LINE L1 -694 5427 5291 433 293 13 0 chrX 142335322 142335341 -34638799 - L1MA10 LINE L1 -2 6332 6314 2459 242 57 39 chrX 142335341 142336267 -34637873 - L1ME1 LINE L1 -12 6154 5213 775 315 104 13 chrX 142336337 142336788 -34637352 + MLT1L LTR MaLR 118 609 -6 2688 123 7 16 chrX 142337169 142337618 -34636522 - L1MA2 LINE L1 -5 6299 5855 15440 176 34 16 chrX 142337618 142337965 -34636175 - L1M1 LINE L1 -4675 2890 2551 2020 165 21 12 chrX 142337965 142338305 -34635835 - MER61A LTR ERV1 0 343 1 15440 176 34 16 chrX 142338305 142339860 -34634280 - L1M1 LINE L1 -5014 2551 917 2519 110 5 32 chrX 142339860 142340234 -34633906 - THE1B LTR MaLR 0 364 1 15440 176 34 16 chrX 142340234 142341156 -34632984 - L1M1 LINE L1 -6648 917 13 644 255 7 13 chrX 142341181 142341330 -34632810 - MIR SINE MIR -69 193 46 2286 100 10 7 chrX 142342680 142342989 -34631151 - AluSx SINE Alu -2 310 1 2341 85 3 0 chrX 142342993 142343287 -34630853 - AluSg SINE Alu -15 295 1 665 276 33 19 chrX 142344521 142344731 -34629409 + MIR SINE MIR 47 259 -3 455 322 7 7 chrX 142345063 142345206 -34628934 - MIR SINE MIR -108 154 12 2337 75 0 23 chrX 142348230 142348535 -34625605 - AluSc SINE Alu -11 298 1 10682 185 112 14 chrX 142348662 142351188 -34622952 + L1PBa LINE L1 6 2780 -4083 4132 190 1 1 chrX 142351195 142351990 -34622150 + L1 LINE L1 2826 3620 -3242 2212 148 3 16 chrX 142351996 142352368 -34621772 + L1PB1 LINE L1 5782 6148 -3 225 39 0 0 chrX 142352521 142352547 -34621593 + U6 snRNA snRNA 1 26 -81 854 278 54 59 chrX 142353040 142353816 -34620324 + HAL1 LINE L1 829 1600 -907 * 1206 251 7 26 chrX 142353814 142354179 -34619961 + L1M3e LINE L1 1759 2125 -4902 257 370 12 12 chrX 142354476 142354641 -34619499 - MLT1J LTR MaLR -204 307 143 467 293 53 0 chrX 142357050 142357183 -34616957 - MIR SINE MIR -74 188 49 266 279 0 82 chrX 142357632 142357754 -34616386 - MIR SINE MIR -50 212 101 2697 147 20 40 chrX 142358309 142358866 -34615274 + L1MA8 LINE L1 5740 6285 -6 210 361 89 43 chrX 142359294 142359574 -34614566 + L2 LINE L2 2346 2638 -676 402 239 0 0 chrX 142359726 142359814 -34614326 + MER103 DNA DNA 21 108 -58 186 286 0 0 chrX 142359883 142359932 -34614208 + L2 LINE L2 3219 3267 -5 950 190 27 11 chrX 142360051 142360235 -34613905 - MER20 DNA MER1_type -2 217 31 415 250 48 40 chrX 142360711 142360835 -34613305 - L2 LINE L2 0 3313 3189 3294 79 31 0 chrX 142360945 142361389 -34612751 + LTR22A LTR ERVK 1 458 0 206 32 32 0 chrX 142362337 142362368 -34611772 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 31 0 0 24 chrX 142363136 142363155 -34610985 + AT_rich Low_complexity Low_complexity 1 19 -22 2409 93 3 0 chrX 142363155 142363466 -34610674 - AluSp SINE Alu 0 313 2 31 0 0 24 chrX 142363466 142363488 -34610652 + AT_rich Low_complexity Low_complexity 19 41 0 273 325 91 43 chrX 142363749 142363980 -34610160 + L2 LINE L2 2842 3083 -189 342 129 14 0 chrX 142365233 142365303 -34608837 - L1PA16 LINE L1 -17 6149 6079 198 258 61 0 chrX 142365317 142365383 -34608757 + MIR3 SINE MIR 137 206 -2 192 399 15 30 chrX 142366525 142366658 -34607482 - MIR SINE MIR -62 146 16 884 294 35 0 chrX 142368060 142368291 -34605849 - MIR SINE MIR -21 241 3 934 290 29 0 chrX 142368881 142369126 -34605014 + MIR SINE MIR 4 255 -7 186 292 168 36 chrX 142370231 142370368 -34603772 + L2 LINE L2 3159 3313 0 186 167 48 0 chrX 142370375 142370417 -34603723 - MIR SINE MIR -68 194 151 731 291 55 24 chrX 142370439 142370693 -34603447 - MIR SINE MIR 0 262 1 343 281 56 0 chrX 142371130 142371219 -34602921 + MER5B DNA MER1_type 2 95 -83 2406 194 36 11 chrX 142371733 142372574 -34601566 + MER54A LTR ERVL 1 901 0 1827 150 0 49 chrX 142372976 142373302 -34600838 + AluSx SINE Alu 1 310 -2 885 144 17 12 chrX 142373419 142373592 -34600548 - L1MB8 LINE L1 0 6178 6005 4262 192 30 5 chrX 142373622 142374542 -34599598 - L1 LINE L1 -934 5212 4270 448 181 24 0 chrX 142374556 142374639 -34599501 + L1M2 LINE L1 5456 5540 -751 2191 109 0 0 chrX 142374674 142374957 -34599183 - AluSg SINE Alu -27 283 1 22 0 0 0 chrX 142375355 142375377 -34598763 + AT_rich Low_complexity Low_complexity 1 22 0 1499 193 55 7 chrX 142375600 142375890 -34598250 - AluJb SINE Alu -8 304 1 452 273 37 23 chrX 142376711 142376891 -34597249 + MIR SINE MIR 72 251 -11 1663 153 69 0 chrX 142377081 142377355 -34596785 - AluJb SINE Alu -17 295 3 2437 50 9 31 chrX 142377810 142378128 -34596012 + AluY SINE Alu 1 311 0 190 286 0 0 chrX 142378265 142378321 -34595819 + L2 LINE L2 3258 3313 0 26 0 0 0 chrX 142378573 142378599 -34595541 + AT_rich Low_complexity Low_complexity 1 26 0 718 306 102 42 chrX 142378654 142379036 -34595104 + MLT1I LTR MaLR 3 407 -2 25 0 0 0 chrX 142379102 142379127 -34595013 + AT_rich Low_complexity Low_complexity 1 25 0 2018 168 91 15 chrX 142379133 142379531 -34594609 + MSTA LTR MaLR 1 428 0 244 336 34 42 chrX 142380269 142380388 -34593752 + MER5B DNA MER1_type 1 118 -60 189 0 0 0 chrX 142380693 142380714 -34593426 + (TTG)n Simple_repeat Simple_repeat 2 22 0 479 350 92 31 chrX 142381117 142381174 -34592966 - L3 LINE CR1 -340 1237 1185 789 274 6 0 chrX 142381174 142381349 -34592791 + MER45A DNA AcHobo 3 178 0 479 350 92 31 chrX 142381349 142381585 -34592555 - L3 LINE CR1 -392 1185 926 729 235 65 5 chrX 142382092 142382292 -34591848 - LTR33A LTR ERVL -13 510 299 4040 155 17 18 chrX 142383665 142384375 -34589765 + MER50 LTR ERV1 1 709 -25 31 0 0 0 chrX 142385015 142385046 -34589094 + AT_rich Low_complexity Low_complexity 1 31 0 1315 189 30 27 chrX 142385055 142385383 -34588757 - L1MA7 LINE L1 -10 6281 5953 204 229 21 0 chrX 142385538 142385586 -34588554 - MIR SINE MIR -1 261 213 2396 88 7 0 chrX 142385978 142386283 -34587857 - AluSp SINE Alu -6 307 1 372 364 40 40 chrX 142387170 142387472 -34586668 + MLT1J LTR MaLR 7 308 -203 1744 220 115 23 chrX 142387491 142387933 -34586207 - MLT2B1 LTR ERVL 0 554 1 251 309 8 81 chrX 142388238 142388361 -34585779 - L2 LINE L2 -660 2654 2541 386 276 104 47 chrX 142388544 142388736 -34585404 + MIR SINE MIR 57 259 -3 1746 173 49 32 chrX 142390255 142390624 -34583516 - THE1C LTR MaLR 0 375 1 244 303 110 0 chrX 142390626 142390771 -34583369 - MLT1K LTR MaLR -15 573 413 11947 147 41 30 chrX 142390971 142391594 -34582546 - Tigger1 DNA MER2_type 0 2418 1803 372 34 34 0 chrX 142391594 142391653 -34582487 + L1MA3 LINE L1 6245 6305 0 11947 147 41 30 chrX 142391653 142392111 -34582029 - Tigger1 DNA MER2_type -615 1803 1351 367 77 0 77 chrX 142392111 142392160 -34581980 + L1PA6 LINE L1 6091 6135 -19 201 39 0 0 chrX 142392160 142392186 -34581954 + (TA)n Simple_repeat Simple_repeat 2 27 0 367 77 0 77 chrX 142392186 142392201 -34581939 + L1PA6 LINE L1 6135 6150 -4 11947 147 41 30 chrX 142392201 142393318 -34580822 - Tigger1 DNA MER2_type -1067 1351 196 304 283 44 26 chrX 142393336 142393449 -34580691 + L2 LINE L2 1886 2000 -1314 1132 352 39 30 chrX 142393450 142394225 -34579915 + L2 LINE L2 2109 2890 -424 262 226 8 89 chrX 142394357 142394481 -34579659 - LTR33A LTR ERVL -3 520 407 216 225 34 124 chrX 142394918 142395007 -34579133 + L2 LINE L2 3145 3225 -47 2415 66 0 35 chrX 142395130 142395449 -34578691 + AluY SINE Alu 1 308 -3 603 302 18 27 chrX 142395502 142395724 -34578416 - MIR SINE MIR -37 225 6 1021 147 9 53 chrX 142395972 142396197 -34577943 - L1MA8 LINE L1 -185 6106 5892 33 43 0 0 chrX 142396202 142396249 -34577891 + AT_rich Low_complexity Low_complexity 1 47 0 420 147 116 0 chrX 142396286 142396381 -34577759 + L1MA7 LINE L1 6185 6290 -1 279 197 180 25 chrX 142396405 142396527 -34577613 - MER53 DNA DNA -42 147 7 227 316 109 23 chrX 142396614 142396788 -34577352 - MIR3 SINE MIR -66 196 10 * 348 350 10 105 chrX 142396780 142396978 -34577162 + L2 LINE L2 2996 3156 -116 1808 232 36 26 chrX 142396978 142397474 -34576666 + MLT1D LTR MaLR 1 501 -4 348 350 10 105 chrX 142397474 142397581 -34576559 + L2 LINE L2 3156 3272 0 2239 172 97 27 chrX 142397781 142398257 -34575883 + LTR22 LTR ERVK 1 509 0 361 321 9 18 chrX 142398360 142398472 -34575668 - MER5A DNA MER1_type -1 188 78 411 21 0 0 chrX 142398988 142399036 -34575104 + (CA)n Simple_repeat Simple_repeat 1 48 0 1552 189 0 7 chrX 142399047 142399317 -34574823 - AluJb SINE Alu -44 268 1 267 169 0 0 chrX 142399573 142399632 -34574508 - L1ME4a LINE L1 -198 5923 5865 612 281 0 7 chrX 142401710 142401849 -34572291 + MIR SINE MIR 23 160 -102 1685 196 90 23 chrX 142401849 142402248 -34571892 - MSTB LTR MaLR 0 426 1 440 294 81 77 chrX 142402409 142402916 -34571224 + MLT1J LTR MaLR 1 509 -2 608 240 0 0 chrX 142403348 142403473 -34570667 + MIR SINE MIR 114 238 -24 436 370 33 9 chrX 142403557 142403768 -34570372 + MIR SINE MIR 10 225 -37 2093 180 39 45 chrX 142403950 142404416 -34569724 + MLT2C2 LTR ERVL 2 464 0 495 296 122 11 chrX 142405314 142405503 -34568637 - MIR SINE MIR -10 252 43 282 345 86 30 chrX 142405927 142406228 -34567912 - L2 LINE L2 -619 2695 2378 421 329 51 38 chrX 142406266 142406503 -34567637 - L2 LINE L2 -339 2975 2736 1067 76 0 0 chrX 142406504 142406636 -34567504 - AluY SINE Alu -179 132 1 180 388 91 0 chrX 142406705 142406870 -34567270 - L2 LINE L2 -645 2669 2490 210 136 0 0 chrX 142407366 142407410 -34566730 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 213 0 0 chrX 142407421 142407459 -34566681 + CT-rich Low_complexity Low_complexity 1 38 -281 2111 83 0 4 chrX 142407459 142407724 -34566416 - AluSc SINE Alu -45 264 1 210 213 0 0 chrX 142407724 142407740 -34566400 + CT-rich Low_complexity Low_complexity 37 319 0 23 0 0 0 chrX 142408221 142408244 -34565896 + AT_rich Low_complexity Low_complexity 1 23 0 2255 79 0 0 chrX 142408806 142409126 -34565014 + AluY SINE Alu 1 320 0 1928 168 83 14 chrX 142410100 142410499 -34563641 + MSTA LTR MaLR 1 357 -7 877 48 16 56 chrX 142410499 142410625 -34563515 - LTR46-int LTR ERV1 -6863 122 2 1531 147 40 4 chrX 142410626 142410898 -34563242 - LTR46 LTR ERV1 0 460 179 640 130 0 0 chrX 142410898 142410998 -34563142 - LTR46-int LTR ERV1 -6744 241 142 1247 84 6 12 chrX 142410998 142411165 -34562975 - LTR46 LTR ERV1 -294 166 1 189 0 0 0 chrX 142411820 142411841 -34562299 + (GGGAA)n Simple_repeat Simple_repeat 1 21 0 1950 117 7 14 chrX 142412062 142412385 -34561755 + AluSx SINE Alu 2 322 0 553 275 44 22 chrX 142412642 142412824 -34561316 + MER97b DNA MER1_type? 1 186 -867 286 280 7 7 chrX 142413243 142413386 -34560754 - L1M4 LINE L1 -1701 4445 4303 * 2936 208 52 30 chrX 142413370 142413863 -34560277 - L1MA9 LINE L1 0 6291 5768 363 23 0 0 chrX 142413863 142413907 -34560233 + (CA)n Simple_repeat Simple_repeat 2 45 0 2936 208 52 30 chrX 142413907 142414314 -34559826 - L1MA9 LINE L1 -523 5768 5371 1692 217 82 8 chrX 142414313 142414714 -34559426 - L1MD2 LINE L1 -44 6315 5885 * 1115 136 52 16 chrX 142414714 142414905 -34559235 - MSTB LTR MaLR -1 425 228 504 90 0 0 chrX 142414888 142414955 -34559185 - MSTB LTR MaLR -359 67 1 * 2175 179 84 16 chrX 142414961 142415458 -34558682 - L1MD2 LINE L1 -356 5886 5356 517 358 52 52 chrX 142415459 142416031 -34558109 + L3 LINE CR1 628 1199 -378 6324 113 3 0 chrX 142416074 142416975 -34557165 + HERVH LTR ERV1 4246 5149 -2564 2526 146 7 5 chrX 142416966 142417392 -34556748 + HERVH LTR ERV1 5590 6016 -1697 * 4000 75 9 12 chrX 142417385 142417944 -34556196 + HERVH LTR ERV1 7157 7713 0 2196 81 34 6 chrX 142417946 142418333 -34555807 + LTR7 LTR ERV1 3 450 0 316 258 0 82 chrX 142418338 142418435 -34555705 - LTR33 LTR ERVL -424 97 9 204 336 60 22 chrX 142418435 142418569 -34555571 + L3 LINE CR1 1196 1334 -243 3748 130 31 5 chrX 142418681 142419288 -34554852 + MER39B LTR ERV1 3 625 -28 329 286 0 0 chrX 142419520 142419597 -34554543 + L2 LINE L2 3231 3307 -6 185 382 56 0 chrX 142419621 142419710 -34554430 + MIR3 SINE MIR 4 97 -111 2768 168 71 6 chrX 142420003 142420540 -34553600 - L1PA16 LINE L1 -5 6161 5590 1515 178 17 48 chrX 142420614 142420907 -34553233 + AluSg SINE Alu 5 288 -22 351 309 207 18 chrX 142421013 142421230 -34552910 - MIR SINE MIR 0 262 5 1890 168 18 37 chrX 142421317 142421699 -34552441 + THE1C LTR MaLR 1 375 0 9351 136 59 7 chrX 142421699 142423200 -34550940 + THE1C-int LTR MaLR 1 1580 0 1815 182 18 32 chrX 142423200 142423580 -34550560 + THE1C LTR MaLR 1 375 0 25 65 0 0 chrX 142424145 142424191 -34549949 + AT_rich Low_complexity Low_complexity 1 46 0 3120 249 69 36 chrX 142424987 142427716 -34546424 + L1M4 LINE L1 41 2930 -3714 1163 158 0 13 chrX 142427727 142427955 -34546185 - L1 LINE L1 -1346 4800 4576 1505 182 21 21 chrX 142427957 142428331 -34545809 - L1 LINE L1 -1480 4666 4293 * 3852 172 39 17 chrX 142428329 142429210 -34544930 + L1MEc LINE L1 794 1782 -4644 657 269 62 0 chrX 142429211 142429356 -34544784 + MER8 DNA MER2_type 24 177 -62 500 123 0 0 chrX 142429389 142429462 -34544678 - Tigger2 DNA MER2_type -2645 73 1 969 270 29 14 chrX 142429462 142429914 -34544226 + L1MEc LINE L1 2306 2721 -3705 951 193 32 56 chrX 142429912 142430161 -34543979 + L1MB5 LINE L1 5932 6174 0 * 226 174 87 0 chrX 142430320 142430366 -34543774 - MER117 DNA MER1_type -106 91 42 608 338 98 15 chrX 142430529 142430929 -34543211 - LTR16A LTR ERVL -2 448 16 1038 259 133 49 chrX 142431459 142432007 -34542133 - MLT1G1 LTR MaLR 0 595 2 629 297 146 5 chrX 142432844 142433063 -34541077 - MIR SINE MIR -2 260 11 1209 187 110 21 chrX 142433065 142433399 -34540741 + MSTA LTR MaLR 1 364 0 22 0 0 0 chrX 142434670 142434692 -34539448 + AT_rich Low_complexity Low_complexity 1 22 0 282 309 0 12 chrX 142435496 142435580 -34538560 - MIR SINE MIR -10 252 170 427 241 171 88 chrX 142435667 142435895 -34538245 - MIR SINE MIR -15 247 1 252 316 13 0 chrX 142436211 142436287 -34537853 - MIR3 SINE MIR -6 202 126 23 68 0 0 chrX 142436340 142436384 -34537756 + AT_rich Low_complexity Low_complexity 1 44 0 586 269 109 46 chrX 142436451 142436689 -34537451 + L1MDa LINE L1 19 271 -6269 2495 183 10 10 chrX 142436704 142437196 -34536944 + L1MC1 LINE L1 5703 6194 -139 9235 223 10 7 chrX 142437207 142439041 -34535099 + L1P LINE L1 1305 3148 -2998 3014 91 23 11 chrX 142439041 142439480 -34534660 + MLT2A1 LTR ERVL 1 444 0 9235 223 10 7 chrX 142439480 142439780 -34534360 + L1P LINE L1 3148 3446 -2700 2484 136 16 23 chrX 142439780 142440210 -34533930 + L1PA13 LINE L1 5732 6163 0 504 235 45 50 chrX 142440212 142440412 -34533728 + L1MD1 LINE L1 5481 5679 -563 1675 212 34 16 chrX 142440419 142440843 -34533297 + L1MD1 LINE L1 5797 6231 -11 1613 188 110 42 chrX 142440843 142441243 -34532897 + MSTA LTR MaLR 2 428 0 1675 212 34 16 chrX 142441243 142441256 -34532884 + L1MD1 LINE L1 6231 6242 0 969 182 33 0 chrX 142441269 142441483 -34532657 + L1MB5 LINE L1 5706 5926 -252 1002 203 21 28 chrX 142441505 142441784 -34532356 + L1MB5 LINE L1 5902 6179 -1 249 198 66 55 chrX 142442071 142442162 -34531978 - L1MC5 LINE L1 -77 7884 7793 216 340 14 16 chrX 142442192 142442264 -34531876 + MIR SINE MIR 14 84 -124 2492 133 11 0 chrX 142442420 142442780 -34531360 - THE1B LTR MaLR 0 364 1 10173 124 33 5 chrX 142442780 142444316 -34529824 - THE1B-int LTR MaLR 0 1580 1 2419 130 6 0 chrX 142444316 142444678 -34529462 - THE1B LTR MaLR 0 364 1 322 294 34 0 chrX 142444822 142444941 -34529199 - MER94 DNA DNA -11 123 1 223 337 60 0 chrX 142445527 142445610 -34528530 - L2 LINE L2 0 3272 3185 2088 287 160 21 chrX 142445738 142446908 -34527232 - L2 LINE L2 -4 3309 1961 223 349 93 8 chrX 142446907 142447036 -34527104 - L2 LINE L2 -1 3271 3132 * 832 312 4 9 chrX 142447740 142448004 -34526136 + MIR SINE MIR 5 261 -1 1045 229 201 27 chrX 142448101 142448258 -34525882 - L2 LINE L2 -672 2642 2514 186 71 0 0 chrX 142448258 142448286 -34525854 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1045 229 201 27 chrX 142448286 142448530 -34525610 - L2 LINE L2 -800 2514 2171 211 340 30 0 chrX 142448532 142448632 -34525508 + MIR SINE MIR 160 262 0 30 89 0 0 chrX 142449705 142449784 -34524356 + AT_rich Low_complexity Low_complexity 1 79 0 2103 110 63 33 chrX 142450246 142450610 -34523530 + THE1C LTR MaLR 1 375 0 10339 125 29 5 chrX 142450610 142452148 -34521992 + THE1C-int LTR MaLR 1 1575 -5 2248 146 5 13 chrX 142452153 142452531 -34521609 + THE1C LTR MaLR 1 375 0 435 293 85 37 chrX 142452725 142452913 -34521227 + MIR3 SINE MIR 6 202 -6 1905 141 32 37 chrX 142452985 142453362 -34520778 + THE1C LTR MaLR 1 375 0 23 0 0 0 chrX 142453399 142453422 -34520718 + AT_rich Low_complexity Low_complexity 1 23 0 380 293 64 21 chrX 142454289 142454429 -34519711 + MIR SINE MIR 33 178 -84 696 272 71 53 chrX 142454496 142454946 -34519194 - MLT1G1 LTR MaLR -7 535 1 909 200 0 44 chrX 142455001 142455181 -34518959 - FRAM SINE Alu -4 172 1 261 352 117 12 chrX 142455303 142455465 -34518675 - MIR SINE MIR 0 262 84 544 286 87 6 chrX 142455608 142455769 -34518371 - MIR SINE MIR -68 194 21 355 268 0 0 chrX 142456459 142456541 -34517599 + MIR SINE MIR 71 152 -110 2140 97 42 0 chrX 142456551 142456840 -34517300 + AluSx SINE Alu 1 301 -11 21 0 0 0 chrX 142456906 142456927 -34517213 + AT_rich Low_complexity Low_complexity 1 21 0 490 257 62 112 chrX 142456968 142457272 -34516868 - L2 LINE L2 -4 3309 3021 21 36 0 0 chrX 142457335 142457363 -34516777 + AT_rich Low_complexity Low_complexity 1 28 0 3865 158 24 42 chrX 142457520 142458320 -34515820 - LTR1 LTR ERV1 0 785 1 187 260 110 0 chrX 142458333 142458406 -34515734 - MIR SINE MIR -24 238 158 229 369 80 17 chrX 142458457 142458633 -34515507 - MIR SINE MIR -74 188 2 210 143 0 0 chrX 142458985 142459020 -34515120 + (CA)n Simple_repeat Simple_repeat 2 36 0 1250 217 82 80 chrX 142459059 142459524 -34514616 - MER31B LTR ERV1 0 466 1 502 313 123 24 chrX 142459531 142459742 -34514398 + L2 LINE L2 2482 2713 -601 207 333 0 14 chrX 142459833 142459902 -34514238 + L2 LINE L2 3180 3247 -25 2294 80 0 7 chrX 142460188 142460490 -34513650 + AluY SINE Alu 1 300 -11 23 0 0 0 chrX 142460502 142460525 -34513615 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chrX 142461254 142461283 -34512857 + AT_rich Low_complexity Low_complexity 1 29 0 2625 48 0 7 chrX 142461409 142461719 -34512421 - AluY SINE Alu -3 308 1 280 331 16 25 chrX 142462043 142462164 -34511976 + MLT1K LTR MaLR 189 308 -280 2024 29 0 0 chrX 142462239 142462478 -34511662 - L1PA6 LINE L1 -209 5945 5707 1059 8 0 0 chrX 142462478 142462593 -34511547 + L1PA2 LINE L1 6035 6155 0 475 270 64 34 chrX 142462594 142462798 -34511342 + MLT1K LTR MaLR 379 588 0 337 229 47 104 chrX 142463000 142463192 -34510948 - L1MC4 LINE L1 -1 8041 7861 327 286 41 61 chrX 142463219 142463366 -34510774 + MIR3 SINE MIR 63 206 -2 276 30 0 0 chrX 142465285 142465318 -34508822 + (CAGC)n Simple_repeat Simple_repeat 4 36 0 22 0 0 0 chrX 142466515 142466537 -34507603 + AT_rich Low_complexity Low_complexity 1 22 0 505 314 81 34 chrX 142467466 142467762 -34506378 + L2 LINE L2 2429 2738 -576 283 311 66 8 chrX 142467790 142467912 -34506228 - MER102a DNA MER1_type 0 330 202 420 277 0 29 chrX 142468106 142468243 -34505897 + L2 LINE L2 2507 2639 -675 1740 236 22 60 chrX 142468919 142469419 -34504721 - MLT2B3 LTR ERVL -79 460 1 258 344 19 32 chrX 142469726 142469883 -34504257 + MER117 DNA MER1_type 1 155 -42 547 333 63 8 chrX 142470262 142470499 -34503641 + MIR SINE MIR 1 250 -12 2106 124 0 0 chrX 142470827 142471130 -34503010 - AluSx SINE Alu 0 303 1 330 26 0 0 chrX 142471585 142471624 -34502516 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 293 333 29 22 chrX 142471791 142471929 -34502211 + MIR SINE MIR 117 255 -7 2006 120 28 3 chrX 142472933 142473224 -34500916 + AluSx SINE Alu 1 298 -14 25 31 0 0 chrX 142473816 142473848 -34500292 + AT_rich Low_complexity Low_complexity 1 32 0 630 161 28 142 chrX 142474155 142474366 -34499774 + MER53 DNA DNA 3 189 0 6271 103 8 2 chrX 142474642 142475636 -34498504 + L1PA10 LINE L1 5170 6168 0 2429 166 33 17 chrX 142475648 142476165 -34497975 + L1MA4 LINE L1 5771 6295 -5 2235 107 3 3 chrX 142476310 142476610 -34497530 - AluSx SINE Alu -12 300 1 200 400 64 8 chrX 142476705 142476830 -34497310 + MIR SINE MIR 23 154 -108 3477 107 2 26 chrX 142477428 142477932 -34496208 + L1PA7 LINE L1 2 493 -5968 * 12083 99 5 2 chrX 142477920 142479674 -34494466 + L1PA7 LINE L1 3246 5003 -1458 5353 53 6 3 chrX 142479674 142480345 -34493795 + L1PA7 LINE L1 5778 6453 -16 614 213 102 44 chrX 142480359 142480584 -34493556 + L1MA7 LINE L1 5953 6190 -101 22 0 0 0 chrX 142480589 142480611 -34493529 + AT_rich Low_complexity Low_complexity 1 22 0 511 113 0 12 chrX 142480635 142480715 -34493425 + AluSg SINE Alu 1 79 -231 1523 185 18 0 chrX 142480715 142481001 -34493139 - L1PB4 LINE L1 -15 6141 5851 577 159 0 0 chrX 142481007 142481246 -34492894 + L1MA7 LINE L1 6179 6417 0 449 245 23 12 chrX 142481396 142481543 -34492597 - MER63 DNA MER1_type 0 1062 686 638 283 59 38 chrX 142481815 142482052 -34492088 - MIR SINE MIR -1 261 20 248 271 0 0 chrX 142482082 142482141 -34491999 + L2 LINE L2 3250 3308 -5 238 228 22 76 chrX 142482208 142482300 -34491840 + L2 LINE L2 3227 3313 0 248 276 0 0 chrX 142482602 142482660 -34491480 - MIR SINE MIR -86 176 119 838 92 8 0 chrX 142482967 142483087 -34491053 + L1PB2 LINE L1 6027 6147 -4 1166 178 8 17 chrX 142483122 142483358 -34490782 + MER96B DNA MER1_type? 1 234 -183 258 32 0 0 chrX 142484854 142484885 -34489255 + (CA)n Simple_repeat Simple_repeat 2 32 0 2522 122 8 0 chrX 142486072 142486433 -34487707 - THE1B LTR MaLR 0 364 1 2353 92 0 0 chrX 142488130 142488433 -34485707 - AluSq SINE Alu -10 303 1 287 88 404 0 chrX 142488897 142488954 -34485186 - MADE1 DNA Mariner 0 80 1 305 269 32 32 chrX 142491281 142491374 -34482766 - MIR3 SINE MIR -8 200 108 504 333 36 20 chrX 142491532 142491727 -34482413 + MIR SINE MIR 10 207 -55 216 67 0 0 chrX 142491729 142491759 -34482381 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1060 287 23 78 chrX 142491764 142492501 -34481639 - L2 LINE L2 -5 3308 2599 705 273 48 14 chrX 142493537 142493815 -34480325 + L1PBa LINE L1 5 276 -6892 411 289 30 15 chrX 142493877 142494012 -34480128 - LTR45 LTR ERV1 0 525 389 294 207 0 0 chrX 142494268 142494326 -34479814 + L1PBa LINE L1 455 512 -6645 2519 122 144 2 chrX 142494331 142494748 -34479392 - THE1C-int LTR MaLR -1104 476 1 1498 179 67 28 chrX 142494749 142495107 -34479033 - THE1C LTR MaLR -1 374 3 3342 135 0 0 chrX 142495109 142495620 -34478520 + L1PA13 LINE L1 5645 6155 -8 5392 203 32 7 chrX 142495702 142495862 -34478278 + L1MA6 LINE L1 2888 3042 -3104 1767 163 76 20 chrX 142495862 142496217 -34477923 - THE1C LTR MaLR 0 375 1 5392 203 32 7 chrX 142496217 142497325 -34476815 + L1MA6 LINE L1 3042 4188 -1958 1453 35 0 0 chrX 142497326 142497498 -34476642 + L1PA5 LINE L1 5707 5878 -276 1068 169 54 65 chrX 142497484 142497733 -34476407 + L1MA6 LINE L1 5070 5320 -891 * 1982 151 0 7 chrX 142497733 142498032 -34476108 + AluSx SINE Alu 1 297 -15 2185 90 7 7 chrX 142498037 142498347 -34475793 + L1PA8 LINE L1 5863 6172 0 1068 169 54 65 chrX 142498347 142498486 -34475654 + L1MA6 LINE L1 5324 5468 -743 876 199 49 108 chrX 142498490 142499038 -34475102 - MER4C LTR ERV1 0 678 82 192 77 0 0 chrX 142499038 142499064 -34475076 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 876 199 49 108 chrX 142499064 142499142 -34474998 - MER4C LTR ERV1 -596 82 1 2495 175 77 81 chrX 142499146 142499454 -34474686 - MER4C-int LTR ERV1 -2 6596 6288 297 0 0 0 chrX 142499454 142499487 -34474653 + (CA)n Simple_repeat Simple_repeat 2 34 0 2495 175 77 81 chrX 142499487 142499897 -34474243 - MER4C-int LTR ERV1 -310 6288 5881 3335 201 20 25 chrX 142499902 142500698 -34473442 + L1MA6 LINE L1 5499 6290 -10 2404 78 0 0 chrX 142500782 142501078 -34473062 - AluY SINE Alu -14 297 2 3243 205 6 3 chrX 142502370 142503082 -34471058 + L1PBa LINE L1 965 1949 -5219 10075 223 14 7 chrX 142503107 142507558 -34466582 + L1PB3 LINE L1 792 5716 -495 2583 133 13 3 chrX 142507560 142507951 -34466189 + L1PB3 LINE L1 5816 6210 -1 325 169 0 0 chrX 142507971 142508030 -34466110 - MER53 DNA DNA -124 65 7 2064 189 34 52 chrX 142508074 142508514 -34465626 - MSTB1 LTR MaLR 0 432 1 21 36 0 0 chrX 142508601 142508629 -34465511 + AT_rich Low_complexity Low_complexity 1 28 0 478 326 103 9 chrX 142508643 142508867 -34465273 - MIR SINE MIR -13 249 5 251 378 98 0 chrX 142510269 142510433 -34463707 - MIR SINE MIR -29 233 54 233 167 0 0 chrX 142510965 142511001 -34463139 - MER58 DNA MER1_type 0 2420 2385 52589 74 8 5 chrX 142511003 142517823 -34456317 + LTR46-int LTR ERV1 144 6985 0 2986 123 29 2 chrX 142517823 142518271 -34455869 + LTR46 LTR ERV1 1 460 0 27 73 0 0 chrX 142518868 142518923 -34455217 + AT_rich Low_complexity Low_complexity 1 55 0 1261 210 64 93 chrX 142519296 142519886 -34454254 + L1M4 LINE L1 4115 4687 -1459 656 218 20 50 chrX 142519884 142520086 -34454054 + L1MD2 LINE L1 6163 6358 -1 * 232 385 42 21 chrX 142520250 142520538 -34453602 - L3 LINE CR1 -1070 507 214 243 0 0 0 chrX 142520542 142520569 -34453571 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 210 266 16 0 chrX 142521381 142521445 -34452695 + (CTA)n Simple_repeat Simple_repeat 1 65 0 182 257 0 0 chrX 142521465 142521500 -34452640 - MIR SINE MIR -21 241 207 723 279 108 55 chrX 142521514 142521984 -34452156 - LTR33 LTR ERVL -24 497 3 307 296 0 11 chrX 142521991 142522079 -34452061 - MIR SINE MIR -77 185 99 211 349 0 0 chrX 142522144 142522210 -34451930 + MIR3 SINE MIR 89 154 -54 1820 167 7 3 chrX 142522244 142522544 -34451596 + AluSx SINE Alu 1 301 -11 8059 28 0 0 chrX 142522598 142523710 -34450430 - L1PA4 LINE L1 -3 6152 5042 218 279 16 0 chrX 142523952 142524013 -34450127 - L2 LINE L2 -10 3303 3242 18469 178 41 14 chrX 142524229 142530081 -34444059 - L1MA1 LINE L1 0 7721 2027 540 0 0 0 chrX 142530081 142530141 -34443999 + (TC)n Simple_repeat Simple_repeat 1 60 0 18469 178 41 14 chrX 142530141 142531675 -34442465 - L1MA1 LINE L1 -5694 2027 125 2617 42 0 3 chrX 142531675 142531981 -34442159 - AluY SINE Alu -6 305 1 18469 178 41 14 chrX 142531981 142532098 -34442042 - L1MA1 LINE L1 -7596 125 13 284 314 0 32 chrX 142534522 142534646 -34439494 - MIR SINE MIR -137 125 6 283 239 65 11 chrX 142534937 142535029 -34439111 + MIR SINE MIR 36 132 -76 271 250 118 37 chrX 142535744 142535880 -34438260 - MIR SINE MIR -13 249 103 12577 233 28 28 chrX 142536209 142538359 -34435781 + L1PB3 LINE L1 1 2149 -4700 2555 43 0 7 chrX 142538359 142538690 -34435450 + AluY SINE Alu 1 329 0 12577 233 28 28 chrX 142538690 142538808 -34435332 + L1PB3 LINE L1 2149 2265 -4584 3289 137 30 0 chrX 142538808 142539306 -34434834 + MER75 DNA T2_type 1 513 -1 12577 233 28 28 chrX 142539306 142541524 -34432616 + L1PB3 LINE L1 2265 4481 -2368 2165 131 7 0 chrX 142541524 142541822 -34432318 + AluSq SINE Alu 1 300 -13 12577 233 28 28 chrX 142541822 142541951 -34432189 + L1PB3 LINE L1 4481 4608 -2241 1992 149 3 0 chrX 142541951 142542247 -34431893 + AluSx SINE Alu 1 297 -15 12577 233 28 28 chrX 142542247 142544618 -34429522 + L1PB3 LINE L1 4608 6072 -777 817 223 0 0 chrX 142544619 142544767 -34429373 + AluJo SINE Alu 3 150 -162 734 196 14 36 chrX 142544832 142544970 -34429170 + AluJo SINE Alu 154 288 -24 4890 134 8 26 chrX 142544975 142545024 -34429116 + L1PB3 LINE L1 6063 6111 -746 2256 148 117 5 chrX 142545024 142545409 -34428731 - MSTA LTR MaLR 0 428 1 8510 156 60 40 chrX 142545409 142546956 -34427184 - MSTA-int LTR MaLR 0 1580 3 2261 166 83 8 chrX 142546958 142547356 -34426784 - MSTA LTR MaLR 0 428 1 4890 134 8 26 chrX 142547356 142548107 -34426033 + L1PB3 LINE L1 6111 6852 -5 2248 113 7 0 chrX 142548135 142548435 -34425705 - AluSc SINE Alu -7 302 1 26 0 0 0 chrX 142549201 142549227 -34424913 + AT_rich Low_complexity Low_complexity 1 26 0 1415 201 26 87 chrX 142549281 142549670 -34424470 - MLT1A1 LTR MaLR 0 365 1 373 189 98 118 chrX 142549782 142549935 -34424205 + Charlie8 DNA MER1_type 33 182 -2235 289 338 32 45 chrX 142550165 142550319 -34423821 - MIR3 SINE MIR -54 154 3 2224 242 68 55 chrX 142551031 142551363 -34422777 + L1ME1 LINE L1 4812 5138 -1028 2286 146 88 13 chrX 142551363 142551761 -34422379 + MSTA LTR MaLR 1 428 0 9504 185 27 3 chrX 142551765 142553374 -34420766 + MSTA-int LTR MaLR 5 1651 0 2205 137 124 16 chrX 142553376 142553574 -34420566 + MSTA LTR MaLR 1 176 -252 186 43 0 0 chrX 142553574 142553597 -34420543 + (TC)n Simple_repeat Simple_repeat 1 23 0 2205 137 124 16 chrX 142553597 142553784 -34420356 + MSTA LTR MaLR 176 428 0 2224 242 68 55 chrX 142553784 142554786 -34419354 + L1ME1 LINE L1 5140 6151 -15 259 306 74 19 chrX 142554881 142554989 -34419151 + L2 LINE L2 3200 3313 0 260 333 121 34 chrX 142555187 142555568 -34418572 - L2 LINE L2 -939 2375 1962 1327 93 4 1 chrX 142555595 142555792 -34418348 + L1PA7 LINE L1 5953 6152 -2 242 308 12 64 chrX 142556609 142556781 -34417359 + L2 LINE L2 2896 3058 -214 851 228 52 20 chrX 142556896 142557056 -34417084 - MLT1B LTR MaLR -132 258 86 1568 163 111 13 chrX 142557056 142557363 -34416777 + MER1B DNA MER1_type 1 337 0 851 228 52 20 chrX 142557363 142557452 -34416688 - MLT1B LTR MaLR -304 86 1 1261 105 145 0 chrX 142557462 142557662 -34416478 + MER30 DNA MER1_type 1 229 -1 551 205 60 54 chrX 142558028 142558194 -34415946 + MIR SINE MIR 86 252 -10 2305 76 6 58 chrX 142558399 142558727 -34415413 + AluSp SINE Alu 1 311 -2 241 327 0 40 chrX 142559945 142560046 -34414094 + MIR SINE MIR 35 131 -77 416 110 0 14 chrX 142560123 142560196 -34413944 + (TC)n Simple_repeat Simple_repeat 1 72 0 209 159 23 23 chrX 142560209 142560253 -34413887 + L2 LINE L2 3267 3310 -3 399 309 42 24 chrX 142560920 142561088 -34413052 + L1ME LINE L1 5599 5769 -352 270 262 117 10 chrX 142561096 142561199 -34412941 + MIR SINE MIR 93 206 -56 257 250 0 0 chrX 142561560 142561612 -34412528 - MIR SINE MIR -110 152 101 189 0 0 0 chrX 142561806 142561827 -34412313 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 221 28 83 0 chrX 142561879 142561915 -34412225 + T-rich Low_complexity Low_complexity 2 40 0 537 0 0 0 chrX 142561934 142561998 -34412142 - L1PA3 LINE L1 -5 6150 6087 556 27 0 0 chrX 142562018 142562091 -34412049 - L1PA3 LINE L1 0 6155 6083 4993 172 10 24 chrX 142562422 142567210 -34406930 + L1PA10 LINE L1 1270 6869 -737 2163 144 8 44 chrX 142567210 142567598 -34406542 - THE1C LTR MaLR -1 374 1 4993 172 10 24 chrX 142567598 142568316 -34405824 + L1PA10 LINE L1 6869 7595 -11 304 224 13 0 chrX 142569047 142569123 -34405017 - LTR16A LTR ERVL -5 445 369 203 188 0 16 chrX 142569185 142569249 -34404891 + (CCA)n Simple_repeat Simple_repeat 2 64 0 606 215 8 127 chrX 142569460 142569720 -34404420 + MER57A LTR ERV1 3 231 -172 285 185 0 0 chrX 142569871 142569925 -34404215 + MER92C LTR ERV1 496 549 -5 395 311 45 67 chrX 142569940 142570252 -34403888 - LTR16A LTR ERVL -87 363 59 196 268 0 0 chrX 142570754 142570795 -34403345 - L2 LINE L2 -12 3260 3220 402 314 180 0 chrX 142571538 142571732 -34402408 - MIR SINE MIR -21 241 13 225 0 0 0 chrX 142572127 142572152 -34401988 + (T)n Simple_repeat Simple_repeat 1 25 0 356 240 67 13 chrX 142572472 142572597 -34401543 + MIR SINE MIR 25 156 -65 336 329 130 10 chrX 142572682 142572889 -34401251 + L2 LINE L2 1788 2019 -1295 498 284 59 28 chrX 142572893 142573122 -34401018 - MIR SINE MIR -7 255 15 2022 143 7 3 chrX 142573158 142573458 -34400682 - AluSx SINE Alu -11 301 1 498 311 11 44 chrX 142573585 142573765 -34400375 - MIR SINE MIR -86 176 3 22 0 0 0 chrX 142574531 142574553 -34399587 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chrX 142575135 142575170 -34398970 + AT_rich Low_complexity Low_complexity 1 35 0 7582 27 0 0 chrX 142575175 142576680 -34397460 - L1PA4 LINE L1 -6 6149 4645 219 325 112 47 chrX 142576726 142576895 -34397245 - MER5A DNA MER1_type 0 189 10 500 255 25 31 chrX 142576970 142577131 -34397009 + MIR SINE MIR 33 192 -70 2145 123 0 0 chrX 142577137 142577422 -34396718 + AluSx SINE Alu 1 285 -27 279 0 0 0 chrX 142577422 142577453 -34396687 + (CA)n Simple_repeat Simple_repeat 2 32 0 412 234 65 16 chrX 142577473 142577597 -34396543 + MLT1J2 LTR MaLR 2 131 -319 341 235 17 41 chrX 142577717 142577842 -34396298 + MLT1I LTR MaLR 278 427 -19 1857 174 43 33 chrX 142578319 142578865 -34395275 - MLT2A2 LTR ERVL 0 554 1 238 278 211 11 chrX 142579154 142579244 -34394896 + L2 LINE L2 3161 3268 -4 1926 141 12 13 chrX 142579314 142579788 -34394352 - L1M1 LINE L1 -708 5594 5119 * 4686 202 162 11 chrX 142579786 142580995 -34393145 - L1M1 LINE L1 -6165 1400 9 214 218 0 18 chrX 142581056 142581111 -34393029 + (TTATA)n Simple_repeat Simple_repeat 2 55 0 2288 139 114 66 chrX 142581121 142581666 -34392474 - LTR4 LTR ERV1 0 596 26 183 162 0 0 chrX 142581699 142581736 -34392404 + (AATTG)n Simple_repeat Simple_repeat 2 38 0 439 287 115 23 chrX 142581749 142581923 -34392217 - MIR3 SINE MIR 0 208 19 191 277 112 95 chrX 142583137 142583379 -34390761 - L2 LINE L2 -7 3265 3020 524 329 24 82 chrX 142583533 142583958 -34390182 - L2 LINE L2 -446 2868 2469 180 333 50 0 chrX 142584104 142584164 -34389976 + L2 LINE L2 3201 3263 -50 3744 255 34 67 chrX 142584267 142585905 -34388235 - L2 LINE L2 -1 3312 1720 192 276 190 0 chrX 142585906 142585964 -34388176 - L2 LINE L2 -498 2816 2748 286 319 147 34 chrX 142585972 142586264 -34387876 - L2 LINE L2 -1172 2142 1818 309 26 0 0 chrX 142586322 142586360 -34387780 + (TG)n Simple_repeat Simple_repeat 2 39 0 4390 123 24 72 chrX 142587199 142588017 -34386123 - MER4E LTR ERV1 0 779 1 1693 117 6 80 chrX 142588090 142588441 -34385699 + MER4A LTR ERV1 1 325 -339 2059 155 25 36 chrX 142588453 142589008 -34385132 - LTR10E LTR ERV1 0 602 1 549 129 212 23 chrX 142589108 142589240 -34384900 + MER4C LTR ERV1 299 455 -10 508 316 12 12 chrX 142589240 142589408 -34384732 - MIR SINE MIR -93 169 2 2103 85 233 136 chrX 142589433 142589961 -34384179 - LTR12 LTR ERV1 -134 580 2 186 233 0 0 chrX 142589976 142590019 -34384121 - MIR SINE MIR -109 153 111 374 266 0 0 chrX 142590209 142590318 -34383822 + MER103 DNA DNA 12 120 -46 351 0 0 0 chrX 142591345 142591384 -34382756 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 179 0 0 chrX 142591416 142591455 -34382685 - MIR3 SINE MIR 0 208 170 1807 130 6 37 chrX 142591459 142591781 -34382359 + LTR8 LTR ERV1 1 312 -379 3150 155 65 2 chrX 142591814 142592387 -34381753 + MER50 LTR ERV1 1 609 -125 4187 158 11 3 chrX 142592390 142593105 -34381035 - MER50 LTR ERV1 -12 722 2 2250 150 5 13 chrX 142593106 142593487 -34380653 + LTR8 LTR ERV1 314 691 0 197 304 18 18 chrX 142593615 142593671 -34380469 + MIR SINE MIR 20 75 -187 259 203 62 0 chrX 142593678 142593742 -34380398 - MLT1I LTR MaLR -2 407 340 388 264 19 9 chrX 142593972 142594078 -34380062 - MLT1I LTR MaLR -302 107 1 219 385 59 0 chrX 142594108 142594243 -34379897 + MIR SINE MIR 102 244 -18 819 282 15 19 chrX 142594305 142594571 -34379569 - L3 LINE CR1 -284 1293 1029 3316 72 30 0 chrX 142594612 142595043 -34379097 - MLT2A1 LTR ERVL 0 444 1 297 326 38 30 chrX 142595382 142595514 -34378626 + MER5A DNA MER1_type 39 171 -18 246 62 0 0 chrX 142595651 142595683 -34378457 + (TA)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chrX 142595812 142595836 -34378304 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 274 303 14 7 chrX 142596992 142597134 -34377006 - MER103 DNA DNA -9 157 15 524 292 69 15 chrX 142597783 142597985 -34376155 + MIR SINE MIR 38 250 -12 205 352 44 0 chrX 142598686 142598777 -34375363 + MIR SINE MIR 53 147 -115 538 311 61 33 chrX 142598993 142599388 -34374752 + L1MC/D LINE L1 5414 5819 -302 579 289 88 21 chrX 142599438 142599677 -34374463 - MIR SINE MIR -5 257 3 29 47 0 0 chrX 142600163 142600206 -34373934 + AT_rich Low_complexity Low_complexity 1 43 0 6700 179 15 33 chrX 142600220 142600612 -34373528 + L1MB1 LINE L1 3730 4128 -2040 1798 194 52 26 chrX 142600612 142600994 -34373146 + MSTD LTR MaLR 3 394 -2 6700 179 15 33 chrX 142600994 142603048 -34371092 + L1MB1 LINE L1 4128 6125 -43 309 130 0 0 chrX 142603364 142603418 -34370722 + L1MB1 LINE L1 6114 6167 -1 2083 134 32 24 chrX 142605644 142606016 -34368124 + THE1C LTR MaLR 1 375 0 8782 140 37 34 chrX 142606018 142607592 -34366548 + THE1C-int LTR MaLR 3 1580 0 1824 177 35 16 chrX 142607592 142607960 -34366180 + THE1C LTR MaLR 1 375 0 1772 219 35 96 chrX 142608651 142608833 -34365307 - MER92B LTR ERV1 0 636 445 2160 121 0 34 chrX 142608833 142609156 -34364984 - AluSx SINE Alu 0 312 1 1772 219 35 96 chrX 142609156 142609226 -34364914 - MER92B LTR ERV1 -191 445 372 2335 107 0 0 chrX 142609226 142609534 -34364606 + AluSg SINE Alu 1 308 -2 1772 219 35 96 chrX 142609534 142609957 -34364183 - MER92B LTR ERV1 -264 372 1 1343 312 81 28 chrX 142610242 142610461 -34363679 - L2 LINE L2 0 3313 3107 2232 110 0 3 chrX 142610461 142610770 -34363370 - AluSc SINE Alu -1 308 1 1343 312 81 28 chrX 142610770 142611335 -34362805 - L2 LINE L2 -206 3107 2495 1366 250 44 23 chrX 142611335 142611723 -34362417 + MSTD LTR MaLR 1 396 0 3011 83 39 14 chrX 142611848 142612281 -34361859 + MLT2A1 LTR ERVL 1 444 0 428 316 48 31 chrX 142613660 142613888 -34360252 + L2 LINE L2 2620 2851 -463 525 388 62 13 chrX 142613901 142614210 -34359930 - L2 LINE L2 0 3272 2949 216 272 22 147 chrX 142614380 142614516 -34359624 + MIR SINE MIR 20 138 -124 4294 189 33 22 chrX 142614516 142615773 -34358367 + L1MA9 LINE L1 4999 6271 -41 200 231 0 0 chrX 142615846 142615885 -34358255 + MIR SINE MIR 205 243 -19 256 325 71 19 chrX 142615905 142616117 -34358023 - L2 LINE L2 -821 2493 2271 569 320 80 49 chrX 142616122 142616510 -34357630 + L2 LINE L2 2869 3268 -4 282 326 43 21 chrX 142617056 142617197 -34356943 + L2 LINE L2 1959 2102 -1212 489 274 27 14 chrX 142617219 142617365 -34356775 - MER5A DNA MER1_type -7 182 35 741 307 99 66 chrX 142617450 142617612 -34356528 + L2 LINE L2 2182 2337 -977 1974 130 7 3 chrX 142617612 142617935 -34356205 - AluSx SINE Alu 0 324 1 741 307 99 66 chrX 142617935 142618389 -34355751 + L2 LINE L2 2337 2819 -495 739 281 18 22 chrX 142618390 142618614 -34355526 + MER58A DNA MER1_type 2 224 0 214 281 23 62 chrX 142618676 142618804 -34355336 + L2 LINE L2 2938 3060 -212 2525 46 3 0 chrX 142619046 142619349 -34354791 - AluY SINE Alu -7 304 1 21 57 0 0 chrX 142620047 142620082 -34354058 + AT_rich Low_complexity Low_complexity 1 35 0 490 310 48 41 chrX 142620687 142620958 -34353182 - L3 LINE CR1 -19 1558 1286 372 258 62 23 chrX 142620973 142621101 -34353039 + MIR3 SINE MIR 33 165 -43 21 0 0 0 chrX 142622515 142622536 -34351604 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 142624065 142624086 -34350054 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chrX 142624379 142624408 -34349732 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chrX 142624503 142624531 -34349609 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chrX 142625855 142625883 -34348257 + AT_rich Low_complexity Low_complexity 1 28 0 246 176 0 0 chrX 142627447 142627498 -34346642 + (CA)n Simple_repeat Simple_repeat 1 51 0 260 233 14 0 chrX 142627720 142627793 -34346347 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 234 209 47 0 chrX 142627793 142627879 -34346261 - L1MC4 LINE L1 -1339 6703 6614 423 0 0 0 chrX 142629033 142629080 -34345060 + (T)n Simple_repeat Simple_repeat 1 47 0 183 42 0 0 chrX 142635706 142635730 -34338410 + (TC)n Simple_repeat Simple_repeat 1 24 0 189 147 0 0 chrX 142635963 142635997 -34338143 + (CGGG)n Simple_repeat Simple_repeat 4 37 0 468 0 0 0 chrX 142636433 142636485 -34337655 + (CA)n Simple_repeat Simple_repeat 2 53 0 249 33 0 0 chrX 142637058 142637088 -34337052 + (A)n Simple_repeat Simple_repeat 1 30 0 2183 131 0 0 chrX 142639854 142640166 -34333974 - AluSx SINE Alu 0 312 1 316 299 6 30 chrX 142640240 142640407 -34333733 + MER103 DNA DNA 3 165 -1 384 304 145 15 chrX 142640515 142640634 -34333506 - MIR SINE MIR 0 262 160 1630 190 4 0 chrX 142640634 142640913 -34333227 + AluJb SINE Alu 1 280 -32 315 0 0 0 chrX 142640913 142640948 -34333192 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 384 304 145 15 chrX 142640948 142641035 -34333105 - MIR SINE MIR -101 161 32 1260 178 115 22 chrX 142641102 142641372 -34332768 + AluJb SINE Alu 1 295 -17 306 22 152 0 chrX 142641678 142641724 -34332416 - MLT2A2 LTR ERVL 0 453 392 371 119 15 0 chrX 142641745 142641812 -34332328 + (TA)n Simple_repeat Simple_repeat 2 69 0 2729 102 30 0 chrX 142641812 142642213 -34331927 - MLT2A2 LTR ERVL -40 413 1 1874 51 16 12 chrX 142643058 142643312 -34330828 + L1MA1 LINE L1 6048 6302 0 326 257 193 0 chrX 142643763 142643872 -34330268 - L3 LINE CR1 -18 1559 1430 447 287 84 50 chrX 142643975 142644177 -34329963 + MIR SINE MIR 16 224 -38 1709 51 0 0 chrX 142644871 142645085 -34329055 - L1PA4 LINE L1 -3 6152 5939 214 224 0 35 chrX 142646954 142647012 -34327128 + (CTATA)n Simple_repeat Simple_repeat 5 60 0 1328 135 10 0 chrX 142647488 142647696 -34326444 + MER2 DNA MER2_type 1 210 -135 5287 80 22 0 chrX 142647733 142648445 -34325695 - L1PA10 LINE L1 -8 6160 5433 189 229 160 61 chrX 142649489 142649620 -34324520 - MIR SINE MIR -47 215 72 767 234 149 12 chrX 142649782 142650030 -34324110 - LTR50 LTR ERVL -506 289 8 299 308 122 30 chrX 142650400 142650761 -34323379 - ERVL LTR ERVL -326 5438 5045 21 0 0 0 chrX 142650985 142651006 -34323134 + AT_rich Low_complexity Low_complexity 1 21 0 369 288 51 17 chrX 142651430 142651548 -34322592 - L2 LINE L2 -1 3312 3191 2136 109 0 0 chrX 142651726 142652030 -34322110 + AluSx SINE Alu 1 304 0 641 236 14 14 chrX 142652520 142652668 -34321472 - MIR SINE MIR -34 228 81 724 302 157 18 chrX 142652753 142653084 -34321056 + L3 LINE CR1 918 1294 -283 1457 154 69 20 chrX 142653474 142653780 -34320360 - L1MC1 LINE L1 0 6333 6013 1351 78 47 0 chrX 142653780 142653995 -34320145 + L1PA8 LINE L1 5949 6172 0 705 274 75 5 chrX 142654009 142654221 -34319919 + MIR SINE MIR 36 262 0 536 92 64 29 chrX 142654425 142654598 -34319542 + (TA)n Simple_repeat Simple_repeat 1 179 0 240 129 102 0 chrX 142654639 142654786 -34319354 + (TA)n Simple_repeat Simple_repeat 2 163 0 427 88 88 19 chrX 142654801 142654961 -34319179 + (TA)n Simple_repeat Simple_repeat 2 172 0 712 132 42 19 chrX 142654991 142655303 -34318837 + (TA)n Simple_repeat Simple_repeat 1 319 0 303 283 33 42 chrX 142656144 142656264 -34317876 + L2 LINE L2 3195 3313 0 450 329 111 9 chrX 142656727 142656952 -34317188 + MIR SINE MIR 9 256 -6 4283 204 27 19 chrX 142658162 142658913 -34315227 + L1MB2 LINE L1 4617 5360 -811 2326 93 3 0 chrX 142658913 142659214 -34314926 + AluSp SINE Alu 1 302 -11 4283 204 27 19 chrX 142659214 142660003 -34314137 + L1MB2 LINE L1 5360 6169 -2 231 36 0 0 chrX 142660032 142660060 -34314080 + (CA)n Simple_repeat Simple_repeat 1 28 0 5973 167 7 6 chrX 142661636 142663171 -34310969 - L1MA8 LINE L1 -5 6286 4750 2685 149 2 13 chrX 142663141 142663611 -34310529 - L1MA8 LINE L1 -2020 4126 3662 * 237 95 0 0 chrX 142664267 142664309 -34309831 - LTR66 LTR ERVL -175 435 394 262 245 59 20 chrX 142665410 142665512 -34308628 - MIR SINE MIR -8 254 149 302 349 41 41 chrX 142665683 142665855 -34308285 - L2 LINE L2 -210 3062 2891 3538 148 42 100 chrX 142666642 142666785 -34307355 - L1MA4A LINE L1 -5 6298 6148 2329 103 0 3 chrX 142666785 142667097 -34307043 - AluY SINE Alu 0 311 1 3538 148 42 100 chrX 142667097 142667810 -34306330 - L1MA4A LINE L1 -155 6148 5492 1803 263 206 14 chrX 142667959 142668122 -34306018 - L1M2 LINE L1 -6063 786 656 207 0 0 0 chrX 142668122 142668145 -34305995 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1803 263 206 14 chrX 142668145 142668631 -34305509 - L1M2 LINE L1 -6193 656 12 225 359 10 29 chrX 142668699 142668802 -34305338 - L1MC/D LINE L1 -2158 5650 5550 316 279 73 47 chrX 142668803 142669036 -34305104 - L1MC/D LINE L1 -711 5531 5293 2153 81 0 0 chrX 142669696 142669956 -34304184 - AluSg SINE Alu -13 297 38 1256 131 0 0 chrX 142670109 142670300 -34303840 + L1PA13 LINE L1 5962 6152 -11 321 250 23 78 chrX 142670322 142670450 -34303690 - MIR SINE MIR -46 216 96 237 283 53 9 chrX 142670453 142670566 -34303574 + L1ME4a LINE L1 5991 6108 -13 363 373 59 24 chrX 142671116 142671285 -34302855 - L2 LINE L2 -1 3271 3097 237 333 0 0 chrX 142671411 142671468 -34302672 + L2 LINE L2 3150 3206 -66 494 210 216 6 chrX 142671536 142671712 -34302428 + MER58C DNA MER1_type 1 213 -2 317 253 0 27 chrX 142671967 142672042 -34302098 + L2 LINE L2 3200 3272 0 240 35 0 0 chrX 142672227 142672256 -34301884 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2179 111 0 7 chrX 142672302 142672609 -34301531 + AluSx SINE Alu 1 305 -7 609 110 10 20 chrX 142674758 142674858 -34299282 - L1PA11 LINE L1 -2 6172 6074 580 135 0 0 chrX 142674859 142674948 -34299192 + L1P LINE L1 1774 1862 -4284 2073 103 3 3 chrX 142675476 142675823 -34298317 + AluSq SINE Alu 1 347 0 320 299 67 87 chrX 142676351 142676735 -34297405 - L2 LINE L2 -177 3095 2698 529 191 0 38 chrX 142676735 142676840 -34297300 - MER58C DNA MER1_type 0 215 115 364 316 4 0 chrX 142676862 142677008 -34297132 - MER58 DNA MER1_type -65 150 3 2449 34 0 14 chrX 142677511 142677805 -34296335 - AluY SINE Alu -10 301 12 6010 109 5 0 chrX 142677833 142679239 -34294901 - L1PA14 LINE L1 0 6161 4749 298 250 175 19 chrX 142680399 142680559 -34293581 - L1ME3A LINE L1 -202 5968 5784 256 246 33 0 chrX 142680559 142680620 -34293520 + GA-rich Low_complexity Low_complexity 5 67 0 846 292 70 33 chrX 142680621 142681204 -34292936 - L1ME3A LINE L1 -1817 4329 3725 1141 182 16 0 chrX 142681227 142681419 -34292721 - AluJb SINE Alu -115 197 3 22 0 0 0 chrX 142681427 142681449 -34292691 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 142681467 142681489 -34292651 + AT_rich Low_complexity Low_complexity 1 22 0 1560 213 35 5 chrX 142681532 142682151 -34291989 - L1M4 LINE L1 -605 5579 4942 545 265 48 14 chrX 142682153 142682300 -34291840 - MLT1G1 LTR MaLR -440 155 4 21 0 0 0 chrX 142682915 142682936 -34291204 + AT_rich Low_complexity Low_complexity 1 21 0 732 178 30 77 chrX 142683038 142683155 -34290985 - Tigger1 DNA MER2_type 0 2418 2310 2281 99 3 0 chrX 142683155 142683449 -34290691 + AluSp SINE Alu 1 295 -18 732 178 30 77 chrX 142683449 142683500 -34290640 - Tigger1 DNA MER2_type -108 2310 2258 * 6653 154 65 7 chrX 142683498 142684644 -34289496 - Tigger1 DNA MER2_type -1206 1212 1 24 32 0 0 chrX 142684819 142684850 -34289290 + AT_rich Low_complexity Low_complexity 1 31 0 3427 207 36 4 chrX 142684972 142685768 -34288372 - L1PA15-16 LINE L1 -2975 3874 3053 360 0 0 0 chrX 142686425 142686465 -34287675 + (CA)n Simple_repeat Simple_repeat 2 41 0 250 281 45 77 chrX 142686465 142686770 -34287370 - L1ME4a LINE L1 -186 5935 5639 2308 188 7 92 chrX 142686999 142687424 -34286716 - L1PA15-16 LINE L1 -3819 3030 2570 2147 120 3 0 chrX 142687424 142687715 -34286425 - AluSp SINE Alu -17 296 5 2308 188 7 92 chrX 142687715 142687794 -34286346 - L1PA15-16 LINE L1 -4279 2570 2486 2418 84 3 0 chrX 142687794 142688103 -34286037 + AluY SINE Alu 1 310 -1 2308 188 7 92 chrX 142688103 142688309 -34285831 - L1PA15-16 LINE L1 -4363 2486 2374 715 109 0 0 chrX 142688322 142688432 -34285708 - L1PB1 LINE L1 0 6151 6042 391 260 73 33 chrX 142688820 142688970 -34285170 + MER20B DNA MER1_type 2 157 -626 977 330 62 20 chrX 142689852 142690306 -34283834 - L2 LINE L2 -808 2506 2034 760 200 55 5 chrX 142691895 142692095 -34282045 - L1M4 LINE L1 -1082 5064 4855 * 973 206 4 45 chrX 142692091 142692334 -34281806 + L1MB8 LINE L1 5945 6177 -1 695 235 51 31 chrX 142692715 142692911 -34281229 - MIR SINE MIR -58 204 5 740 291 140 19 chrX 142693159 142693572 -34280568 + LTR33 LTR ERVL 25 487 -34 190 318 149 28 chrX 142693642 142693749 -34280391 - MIR3 SINE MIR -76 132 13 725 297 84 13 chrX 142693925 142694164 -34279976 + MIR SINE MIR 4 259 -3 395 322 27 27 chrX 142694599 142694782 -34279358 + MIR3 SINE MIR 16 198 -10 181 364 0 0 chrX 142694886 142694963 -34279177 + MIR SINE MIR 63 139 -123 608 261 84 26 chrX 142695450 142695676 -34278464 - L1ME1 LINE L1 -6 6160 5922 2006 172 28 34 chrX 142695681 142696146 -34277994 - L1MA7 LINE L1 -2 6289 5828 4412 157 17 14 chrX 142696146 142696770 -34277370 + L1PB4 LINE L1 5388 6009 -147 1940 201 68 0 chrX 142696770 142697169 -34276971 + MSTA LTR MaLR 1 426 -2 8328 188 30 8 chrX 142697171 142698786 -34275354 + MSTA-int LTR MaLR 1 1651 0 1952 190 70 0 chrX 142698786 142699186 -34274954 + MSTA LTR MaLR 1 428 0 4412 157 17 14 chrX 142699186 142699322 -34274818 + L1PB4 LINE L1 6008 6154 -2 2839 197 16 13 chrX 142699312 142700086 -34274054 - L1MA7 LINE L1 -452 5839 5065 * 2108 127 0 3 chrX 142700086 142700385 -34273755 - AluSq SINE Alu -15 298 1 2839 197 16 13 chrX 142700385 142700451 -34273689 - L1MA7 LINE L1 -1226 5065 5001 1424 107 31 0 chrX 142700448 142700673 -34273467 - L1PA12 LINE L1 -346 5822 5591 * 2031 134 3 12 chrX 142700673 142700999 -34273141 + L1PA12 LINE L1 5826 6150 -18 1667 175 52 6 chrX 142701009 142701217 -34272923 - L1MA7 LINE L1 -1137 5009 4777 240 35 0 0 chrX 142701217 142701246 -34272894 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 1667 175 52 6 chrX 142701246 142701385 -34272755 - L1MA7 LINE L1 -1369 4777 4646 3130 188 79 191 chrX 142701395 142702851 -34271289 + MER52A LTR ERV1 1 1278 0 1709 202 46 0 chrX 142702855 142703265 -34270875 - L1MA7 LINE L1 -1511 4635 4207 685 245 19 0 chrX 142703303 142703462 -34270678 + MSTD LTR MaLR 235 396 0 23 54 0 0 chrX 142703474 142703511 -34270629 + AT_rich Low_complexity Low_complexity 1 37 0 341 292 35 18 chrX 142703590 142703703 -34270437 - L2 LINE L2 -4 3309 3195 334 245 205 66 chrX 142703944 142704095 -34270045 - MIR SINE MIR -21 241 70 633 180 8 8 chrX 142704799 142704921 -34269219 - THE1C LTR MaLR 0 375 254 2646 150 106 54 chrX 142704933 142705508 -34268632 - THE1-int LTR MaLR -654 926 322 1279 231 124 11 chrX 142705499 142705703 -34268437 + L1MD2 LINE L1 5911 6091 -268 * 333 0 0 0 chrX 142705703 142705740 -34268400 + (CA)n Simple_repeat Simple_repeat 2 38 0 1279 231 124 11 chrX 142705740 142705899 -34268241 + L1MD2 LINE L1 6091 6315 -44 376 214 47 27 chrX 142705898 142706302 -34267838 + L1MA8 LINE L1 5371 5766 -525 * 414 0 0 0 chrX 142706302 142706348 -34267792 + (TG)n Simple_repeat Simple_repeat 2 47 0 376 214 47 27 chrX 142706348 142706629 -34267511 + L1MA8 LINE L1 5766 6266 -25 351 251 21 8 chrX 142706625 142706781 -34267359 + L1M4 LINE L1 4284 4445 -1701 * 482 208 45 65 chrX 142707183 142707337 -34266803 - MER97c DNA MER1_type? -894 196 46 2054 115 3 26 chrX 142707606 142707918 -34266222 - AluSx SINE Alu -7 305 1 2889 126 34 2 chrX 142708924 142709370 -34264770 + LTR46 LTR ERV1 1 460 0 54302 72 8 6 chrX 142709370 142710125 -34264015 + LTR46-int LTR ERV1 1 753 -6232 237 33 0 0 chrX 142710125 142710155 -34263985 + (TC)n Simple_repeat Simple_repeat 2 31 0 54302 72 8 6 chrX 142710155 142716366 -34257774 + LTR46-int LTR ERV1 753 6985 0 2828 121 29 2 chrX 142716366 142716814 -34257326 + LTR46 LTR ERV1 1 460 0 550 258 105 0 chrX 142717809 142718018 -34256122 + L1M4 LINE L1 4115 4345 -1801 901 235 30 21 chrX 142718099 142718435 -34255705 + L1M4 LINE L1 4349 4687 -1459 612 213 25 55 chrX 142718433 142718635 -34255505 + L1MD2 LINE L1 6163 6358 -1 * 240 356 64 23 chrX 142718804 142719068 -34255072 - L3 LINE CR1 -1070 507 233 13171 100 7 12 chrX 142719404 142721316 -34252824 + L1P3 LINE L1 2 1915 -4546 6403 118 146 139 chrX 142721319 142723003 -34251137 - pTR5 LTR ERV1 0 2438 744 16567 109 1 3 chrX 142723003 142725414 -34248726 + L1P3 LINE L1 1911 4317 -2144 1958 111 7 7 chrX 142725414 142725691 -34248449 + L1PA8A LINE L1 5853 6131 0 426 245 0 3 chrX 142725699 142725809 -34248331 - L1M4 LINE L1 -1814 4332 4225 278 286 62 43 chrX 142725858 142726019 -34248121 + L1ME4a LINE L1 5528 5691 -430 261 225 25 12 chrX 142726238 142726275 -34247865 + L1ME4a LINE L1 5825 5860 -261 1871 283 52 18 chrX 142726275 142726848 -34247292 + MLT1E LTR MaLR 1 593 0 261 225 25 12 chrX 142726848 142726890 -34247250 + L1ME4a LINE L1 5860 5905 -216 602 117 0 0 chrX 142777168 142777262 -34196878 + MLT2A2 LTR ERVL 360 453 0 6490 144 23 7 chrX 142777262 142778008 -34196132 + L1MA2 LINE L1 4219 4952 -1352 2458 78 0 0 chrX 142778008 142778317 -34195823 + AluY SINE Alu 1 309 -2 6490 144 23 7 chrX 142778317 142779622 -34194518 + L1MA2 LINE L1 4952 6304 0 810 288 46 25 chrX 142779925 142780293 -34193847 - L1ME3A LINE L1 -290 5880 5505 313 221 21 100 chrX 142780527 142780667 -34193473 - L1ME3A LINE L1 -2143 4003 3875 41 36 0 0 chrX 142780684 142780739 -34193401 + AT_rich Low_complexity Low_complexity 1 55 0 1716 69 4 0 chrX 142780750 142780981 -34193159 + L1PA13 LINE L1 5928 6159 -4 4311 196 56 6 chrX 142781027 142781860 -34192280 + MER49 LTR ERV1 7 881 -42 873 197 6 22 chrX 142781866 142782044 -34192096 + AluJb SINE Alu 138 312 0 265 167 0 0 chrX 142782045 142782093 -34192047 + MER49 LTR ERV1 873 920 -3 383 288 21 42 chrX 142782102 142782342 -34191798 - L1ME3A LINE L1 -2368 3778 3544 730 174 29 22 chrX 142782347 142782485 -34191655 + AluSg/x SINE Alu 153 291 -21 2281 95 0 0 chrX 142782505 142782799 -34191341 + AluSg1 SINE Alu 4 297 -12 1220 330 47 33 chrX 142783267 142784179 -34189961 - HERV16 LTR ERVL -3125 1871 881 366 291 137 40 chrX 142784204 142784379 -34189761 - MIR SINE MIR -59 203 12 385 323 139 0 chrX 142785322 142785483 -34188657 + MIR3 SINE MIR 19 199 -9 3328 196 25 16 chrX 142786204 142786669 -34187471 + MER6 DNA MER2_type 2 476 -389 2455 65 0 23 chrX 142786669 142786977 -34187163 - AluY SINE Alu 0 311 11 3328 196 25 16 chrX 142786977 142787158 -34186982 + MER6 DNA MER2_type 476 654 -211 2245 139 23 0 chrX 142787159 142787505 -34186635 + THE1A LTR MaLR 2 355 0 6519 106 37 1 chrX 142787505 142788421 -34185719 + THE1A-int LTR MaLR 1 949 -631 313 300 0 33 chrX 142788426 142788516 -34185624 + L2 LINE L2 3227 3313 0 2022 136 0 7 chrX 142789466 142789778 -34184362 + AluSx SINE Alu 1 310 0 2544 114 14 3 chrX 142790357 142790726 -34183414 - THE1C LTR MaLR 0 375 3 294 255 117 21 chrX 142790737 142790831 -34183309 + MER117 DNA MER1_type 44 146 -51 308 277 60 68 chrX 142790947 142791182 -34182958 - MLT1K LTR MaLR -36 552 320 2276 217 17 24 chrX 142791921 142792345 -34181795 + L1M3 LINE L1 4787 5212 -956 2067 138 3 0 chrX 142792345 142792643 -34181497 + AluSx SINE Alu 3 301 -11 2276 217 17 24 chrX 142792643 142793118 -34181022 + L1M3 LINE L1 5212 5679 -489 202 306 48 0 chrX 142793277 142793339 -34180801 - MIR3 SINE MIR -29 179 115 345 339 43 0 chrX 142794667 142794782 -34179358 - MIR3 SINE MIR -40 168 49 509 197 49 42 chrX 142794801 142794943 -34179197 + MIR SINE MIR 49 191 -71 2165 121 16 47 chrX 142795080 142795467 -34178673 + THE1C LTR MaLR 1 375 0 10257 118 14 33 chrX 142795468 142797073 -34177067 + THE1C-int LTR MaLR 2 1576 -4 23 0 0 0 chrX 142797796 142797819 -34176321 + AT_rich Low_complexity Low_complexity 1 23 0 2076 114 7 0 chrX 142797898 142798179 -34175961 + AluSp SINE Alu 1 283 -30 19398 192 9 16 chrX 142798622 142799441 -34174699 - L1PA13 LINE L1 -2 6812 5989 2312 131 11 6 chrX 142799441 142799793 -34174347 - THE1A LTR MaLR -1 354 1 11097 109 11 1 chrX 142799793 142801357 -34172783 - THE1A-int LTR MaLR 0 1580 1 2630 101 0 0 chrX 142801357 142801712 -34172428 - THE1A LTR MaLR 0 355 1 19398 192 9 16 chrX 142801712 142802358 -34171782 - L1PA13 LINE L1 -823 5991 5342 207 0 0 0 chrX 142802358 142802381 -34171759 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 19398 192 9 16 chrX 142802381 142804916 -34169224 - L1PA13 LINE L1 -1472 5342 2791 396 0 0 0 chrX 142804916 142804960 -34169180 + (TG)n Simple_repeat Simple_repeat 1 44 0 19398 192 9 16 chrX 142804960 142805434 -34168706 - L1PA13 LINE L1 -4023 2791 2315 3209 152 46 41 chrX 142805434 142806065 -34168075 - MER51A LTR ERV1 0 634 1 19398 192 9 16 chrX 142806065 142806881 -34167259 - L1PA13 LINE L1 -4499 2315 1525 232 291 43 43 chrX 142806958 142807099 -34167041 - L1ME LINE L1 -525 5596 5456 235 235 0 0 chrX 142807231 142807282 -34166858 - L1PBa LINE L1 -4663 2200 2150 395 328 92 82 chrX 142808609 142809012 -34165128 + L2 LINE L2 2866 3272 0 275 218 9 127 chrX 142809073 142809183 -34164957 - MIR SINE MIR -71 191 95 378 0 0 0 chrX 142809218 142809260 -34164880 + (TC)n Simple_repeat Simple_repeat 1 42 0 916 311 49 29 chrX 142809437 142809890 -34164250 - LTR16B LTR ERVL -2 462 1 405 0 0 0 chrX 142809996 142810041 -34164099 + (TG)n Simple_repeat Simple_repeat 2 46 0 262 105 0 0 chrX 142810255 142810293 -34163847 + MER103 DNA DNA 3 40 -126 6401 148 19 13 chrX 142810441 142810695 -34163445 - L1MA1 LINE L1 -2 6300 6049 2116 210 19 72 chrX 142810695 142811280 -34162860 - MLT2B3 LTR ERVL 0 554 1 6401 148 19 13 chrX 142811280 142812536 -34161604 - L1MA1 LINE L1 -253 6049 4780 1098 208 4 22 chrX 142812537 142812763 -34161377 - AluJb SINE Alu -90 222 1 7869 198 48 23 chrX 142812763 142814766 -34159374 - L1MA1 LINE L1 -1369 4777 2725 201 239 45 45 chrX 142814766 142814833 -34159307 + MIR SINE MIR 191 257 -5 601 233 23 8 chrX 142815174 142815307 -34158833 - MER5B DNA MER1_type -43 135 1 789 244 18 27 chrX 142815816 142816041 -34158099 - MER58A DNA MER1_type -1 223 1 1166 262 18 7 chrX 142818063 142818554 -34155586 + REP3 LTR ERV 3 562 0 498 342 16 16 chrX 142818667 142818910 -34155230 - L2 LINE L2 -1968 1346 1104 1066 204 0 41 chrX 142819977 142820222 -34153918 - MER46A DNA MER2_type -1 235 1 6429 150 18 1 chrX 142822456 142823945 -34150195 - L1MA2 LINE L1 -1 7722 6209 * 7622 217 16 6 chrX 142823941 142825764 -34148376 - L1MA2 LINE L1 -2061 5504 3663 4324 209 14 47 chrX 142825780 142826757 -34147383 - L1MA2 LINE L1 -6605 960 16 1766 175 0 10 chrX 142828026 142828323 -34145817 - AluSx SINE Alu -16 296 3 505 386 41 5 chrX 142828559 142828779 -34145361 + L3 LINE CR1 1334 1561 -16 866 268 0 0 chrX 142829766 142829949 -34144191 - MER5A DNA MER1_type 0 189 7 2172 195 61 2 chrX 142830209 142830650 -34143490 - MLT1C LTR MaLR 0 467 1 1680 128 0 4 chrX 142831010 142831244 -34142896 + AluSc SINE Alu 3 235 -74 7790 13 0 3 chrX 142831255 142832300 -34141840 - L1PA2 LINE L1 -2 6153 5111 456 133 0 22 chrX 142832300 142832390 -34141750 + Alu SINE Alu 223 310 0 355 350 11 11 chrX 142832419 142832599 -34141541 - L1M4 LINE L1 -1562 4584 4405 731 277 21 29 chrX 142832919 142833157 -34140983 - LTR16B LTR ERVL 0 464 229 485 314 98 5 chrX 142833267 142833461 -34140679 + MIR SINE MIR 3 214 -48 2198 111 0 7 chrX 142833491 142833797 -34140343 - AluSg SINE Alu -6 304 1 616 264 21 0 chrX 142833813 142833957 -34140183 - MLT1A2 LTR MaLR -222 152 6 30 27 0 0 chrX 142833971 142834008 -34140132 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chrX 142834008 142834038 -34140102 + (CA)n Simple_repeat Simple_repeat 2 31 0 47 67 0 0 chrX 142834089 142834178 -34139962 + AT_rich Low_complexity Low_complexity 1 89 0 1700 163 55 15 chrX 142834259 142834585 -34139555 + MER44D DNA MER2_type 1 609 0 223 403 168 0 chrX 142835136 142835285 -34138855 + MIR3 SINE MIR 21 194 -14 454 333 59 67 chrX 142835415 142835500 -34138640 - L2 LINE L2 -1 3312 3228 324 48 0 0 chrX 142835500 142835542 -34138598 + (GA)n Simple_repeat Simple_repeat 1 42 0 454 333 59 67 chrX 142835542 142835862 -34138278 - L2 LINE L2 -85 3228 2910 883 229 5 9 chrX 142835895 142836109 -34138031 + L1 LINE L1 4117 4329 -1817 882 88 0 0 chrX 142836109 142836223 -34137917 - AluSg/x SINE Alu -8 301 188 4403 201 22 3 chrX 142836223 142837516 -34136624 + L1P4 LINE L1 4329 5642 -523 3114 83 32 5 chrX 142837517 142837949 -34136191 - MLT2A1 LTR ERVL 0 444 1 14544 69 14 5 chrX 142837949 142838388 -34135752 - HERVL-A1 LTR ERVL 0 5654 5221 198 0 0 0 chrX 142838388 142838410 -34135730 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 14544 69 14 5 chrX 142838410 142839846 -34134294 - HERVL-A1 LTR ERVL -433 5221 3761 663 245 16 38 chrX 142840166 142840350 -34133790 - L1MA10 LINE L1 -7 6327 6148 1604 211 31 3 chrX 142840352 142840707 -34133433 - MLT1A1 LTR MaLR 0 365 1 4436 222 35 32 chrX 142840711 142842388 -34131752 - MLT1A1-int LTR MaLR -4 1731 1 1738 209 43 0 chrX 142842388 142842738 -34131402 - MLT1A1 LTR MaLR 0 365 1 2213 229 27 2 chrX 142842760 142843272 -34130868 - L1MB1 LINE L1 -42 6211 5687 3195 188 66 3 chrX 142843296 142843903 -34130237 - LTR51 LTR ERV1 0 671 27 1684 185 7 17 chrX 142843921 142844333 -34129807 - L1MB1 LINE L1 -704 5672 5265 614 136 10 19 chrX 142844335 142844438 -34129702 + MER4B LTR ERV1 509 610 0 3141 236 29 7 chrX 142844438 142845305 -34128835 - L1MB1 LINE L1 -2830 3380 2495 1753 317 39 6 chrX 142845330 142845863 -34128277 - L1MB1 LINE L1 -5590 551 1 461 311 61 30 chrX 142846243 142846507 -34127633 + L2 LINE L2 2947 3218 -95 356 229 0 0 chrX 142846657 142846727 -34127413 - L2 LINE L2 -2 3311 3242 405 0 0 0 chrX 142846890 142846935 -34127205 + (TG)n Simple_repeat Simple_repeat 2 46 0 2306 208 17 69 chrX 142847297 142847622 -34126518 - MER41C LTR ERV1 -1 553 270 1622 184 7 3 chrX 142847622 142847905 -34126235 - AluJb SINE Alu -23 289 6 2306 208 17 69 chrX 142847905 142848162 -34125978 - MER41C LTR ERV1 -284 270 1 2154 151 86 8 chrX 142848584 142848981 -34125159 - MSTA LTR MaLR 0 428 1 6399 143 3 22 chrX 142848981 142850021 -34124119 - MSTA-int LTR MaLR 0 1580 561 3008 125 10 10 chrX 142850021 142850500 -34123640 + L1PB1 LINE L1 5670 6148 -3 284 96 58 0 chrX 142850503 142850555 -34123585 + L1MA3 LINE L1 6251 6305 0 343 127 73 0 chrX 142850900 142851050 -34123090 + (TA)n Simple_repeat Simple_repeat 1 161 0 279 107 36 36 chrX 142851054 142851110 -34123030 + MLT1H LTR MaLR 494 549 0 1510 67 0 0 chrX 142851322 142851515 -34122625 - L1PA3 LINE L1 0 6155 5963 1226 181 13 4 chrX 142851764 142852002 -34122138 + L1MA2 LINE L1 5503 5742 -558 2774 124 13 17 chrX 142852003 142852310 -34121830 + L1MA2 LINE L1 5833 6139 -165 1728 183 0 16 chrX 142852310 142852627 -34121513 + AluJb SINE Alu 1 312 0 2774 124 13 17 chrX 142852627 142852787 -34121353 + L1MA2 LINE L1 6139 6298 -6 21 0 0 0 chrX 142853139 142853160 -34120980 + AT_rich Low_complexity Low_complexity 1 21 0 239 389 63 24 chrX 142853213 142853465 -34120675 - MIR SINE MIR 0 262 1 506 305 137 10 chrX 142853768 142853965 -34120175 + MIR SINE MIR 32 253 -9 1131 259 21 77 chrX 142854078 142854541 -34119599 + MLT1D LTR MaLR 1 435 -70 2182 71 3 41 chrX 142854541 142854861 -34119279 + AluSq SINE Alu 1 309 0 1131 259 21 77 chrX 142854861 142854927 -34119213 + MLT1D LTR MaLR 435 503 -2 1057 290 130 3 chrX 142856555 142856893 -34117247 + L1M4 LINE L1 11 391 -6468 1259 254 26 18 chrX 142857040 142857536 -34116604 + L1M4 LINE L1 4007 4506 -2451 1352 169 10 24 chrX 142857587 142857877 -34116263 + L1M4 LINE L1 5527 5812 -372 1757 227 53 19 chrX 142857936 142858381 -34115759 + L1M4 LINE L1 2614 3089 -3057 2097 182 19 52 chrX 142858381 142858858 -34115282 - LOR1b LTR ERV1 0 461 1 1757 227 53 19 chrX 142858858 142859059 -34115081 + L1M4 LINE L1 3089 3282 -2864 409 234 50 7 chrX 142859092 142859233 -34114907 + L1M4 LINE L1 3618 3764 -2382 1037 265 73 25 chrX 142859237 142859717 -34114423 - L1 LINE L1 -1545 4601 4099 * 2393 196 38 7 chrX 142859714 142860287 -34113853 + L1MA5 LINE L1 5686 6297 0 4006 185 26 20 chrX 142860291 142861172 -34112968 + L1MA9 LINE L1 5427 6312 0 486 338 112 34 chrX 142861221 142861737 -34112403 + L1M4 LINE L1 3697 4262 -1884 2191 95 3 7 chrX 142861737 142862032 -34112108 - AluSc SINE Alu -15 294 1 486 338 112 34 chrX 142862032 142862078 -34112062 + L1M4 LINE L1 4262 4303 -1843 1740 251 31 0 chrX 142863758 142864145 -34109995 + LTR53 LTR ERVL 103 501 -18 12547 157 47 7 chrX 142864293 142866619 -34107521 + Tigger1 DNA MER2_type 1 2418 0 384 303 35 35 chrX 142866735 142866880 -34107260 + Charlie2 DNA MER1_type 177 321 -2541 251 224 168 9 chrX 142866886 142866993 -34107147 + Charlie2 DNA MER1_type 1856 1979 -883 493 222 80 79 chrX 142867031 142867491 -34106649 + Charlie2 DNA MER1_type 2103 2612 -250 783 323 11 4 chrX 142867590 142867856 -34106284 + ERVL LTR ERVL 4793 5060 -704 23 0 0 0 chrX 142868092 142868115 -34106025 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 94 31 chrX 142868372 142868531 -34105609 + LTR50 LTR ERVL 39 207 -588 291 218 135 15 chrX 142868754 142868887 -34105253 + Charlie2 DNA MER1_type 2649 2797 -65 501 308 32 45 chrX 142869335 142869556 -34104584 - L2 LINE L2 0 3313 3096 472 290 157 4 chrX 142869809 142870057 -34104083 + L1M4 LINE L1 2884 3169 -2977 1279 167 0 16 chrX 142870122 142870367 -34103773 - L1MA6 LINE L1 0 6300 6060 5550 165 44 9 chrX 142870369 142870957 -34103183 + L1PBa LINE L1 1967 2533 -4329 2084 109 0 64 chrX 142870957 142871286 -34102854 + AluSg SINE Alu 3 310 0 5550 165 44 9 chrX 142871286 142872441 -34101699 + L1PBa LINE L1 2533 3766 -3096 1304 237 12 9 chrX 142872447 142872784 -34101356 - L1 LINE L1 -808 5338 5001 * 1512 93 8 21 chrX 142872779 142873015 -34101125 - L1PA12 LINE L1 -345 5823 5591 2117 119 49 0 chrX 142873015 142873340 -34100800 + L1PA12 LINE L1 5826 6168 0 1919 166 14 0 chrX 142873344 142873700 -34100440 - L1 LINE L1 -1140 5006 4646 3411 189 105 175 chrX 142873710 142875105 -34099035 + MER52A LTR ERV1 1 1278 0 1706 213 53 0 chrX 142875109 142875527 -34098613 - L1 LINE L1 -1512 4634 4195 794 208 52 0 chrX 142875530 142875684 -34098456 + MSTD LTR MaLR 235 396 0 341 311 27 137 chrX 142875817 142876116 -34098024 - L2 LINE L2 -4 3268 3003 315 275 201 47 chrX 142876145 142876294 -34097846 - MIR SINE MIR -21 241 70 957 202 28 0 chrX 142876415 142876633 -34097507 + L1 LINE L1 4240 4463 -1683 847 148 89 15 chrX 142877219 142877412 -34096728 - THE1C LTR MaLR 0 375 189 2774 258 38 24 chrX 142877413 142878172 -34095968 - L1M1 LINE L1 -6778 787 18 2486 203 15 0 chrX 142878174 142878716 -34095424 - L1M2 LINE L1 -519 6741 6192 2171 146 122 5 chrX 142878717 142879095 -34095045 + MSTA LTR MaLR 1 422 -6 10193 203 40 26 chrX 142879104 142881713 -34092427 - L1M2 LINE L1 -907 6199 3556 905 243 5 10 chrX 142881730 142881936 -34092204 - L1M2 LINE L1 -6817 213 9 281 314 0 0 chrX 142882051 142882175 -34091965 + L1MC4a LINE L1 3340 3463 -2683 1232 20 0 13 chrX 142882312 142882463 -34091677 + L1PA6 LINE L1 6006 6154 0 599 317 85 41 chrX 142882580 142883664 -34090476 + L1MC4a LINE L1 3634 4766 -1380 2996 154 61 2 chrX 142883664 142884221 -34089919 + L1PA7 LINE L1 5563 6152 -2 15125 147 24 40 chrX 142884232 142886974 -34087166 + Tigger4(Zombi) DNA MER2_type 34 2731 0 2904 159 60 41 chrX 142886974 142887611 -34086529 + L1MA7 LINE L1 5643 6291 0 312 351 49 25 chrX 142887641 142887886 -34086254 + L1MC4a LINE L1 4768 5018 -1128 2961 45 0 0 chrX 142888173 142888531 -34085609 - L1PA3 LINE L1 -3 6152 5795 1134 183 52 8 chrX 142888531 142888769 -34085371 + L1MA7 LINE L1 6024 6285 -6 810 325 62 10 chrX 142888988 142889406 -34084734 + L1MC4a LINE L1 5396 5835 -1973 274 291 116 0 chrX 142889457 142889543 -34084597 + MIR SINE MIR 48 143 -65 1328 237 45 76 chrX 142890031 142890479 -34083661 + MLT1C LTR MaLR 34 467 0 22 35 0 0 chrX 142890737 142890766 -34083374 + AT_rich Low_complexity Low_complexity 1 29 0 241 359 0 11 chrX 142891244 142891336 -34082804 + MIR3 SINE MIR 9 99 -109 2070 131 3 0 chrX 142892103 142892401 -34081739 + AluSx SINE Alu 1 299 -13 6934 153 2 3 chrX 142892852 142893999 -34080141 - L1P LINE L1 -1455 4691 3547 5902 102 39 0 chrX 142893995 142894930 -34079210 + L1PA10 LINE L1 5178 6148 -20 * 529 93 9 19 chrX 142894930 142895038 -34079102 + (TCTA)n Simple_repeat Simple_repeat 4 110 0 4321 110 57 0 chrX 142895038 142895693 -34078447 + L1PA11 LINE L1 5481 6172 -2 326 357 38 87 chrX 142895955 142896302 -34077838 + L2 LINE L2 2929 3258 -14 5876 107 8 9 chrX 142897018 142898683 -34075457 - L1PA14 LINE L1 -9 6152 4488 906 161 13 0 chrX 142898684 142898833 -34075307 - MER57A LTR ERV1 -86 317 167 252 174 0 0 chrX 142898838 142898884 -34075256 + MER34C LTR ERV1 170 215 -370 408 208 45 15 chrX 142899052 142899185 -34074955 + MER57A-int LTR ERV1 1096 1190 -3681 489 206 12 5 chrX 142899270 142899444 -34074696 + MER57A-int LTR ERV1 3080 3338 -2993 348 271 0 0 chrX 142899518 142899603 -34074537 + MER57A-int LTR ERV1 3365 3449 -2882 540 233 86 37 chrX 142899670 142900086 -34074054 + MER57A-int LTR ERV1 1707 2192 -2931 2034 101 0 4 chrX 142900136 142900413 -34073727 + AluSq SINE Alu 37 312 -1 16376 145 22 26 chrX 142900510 142901825 -34072315 + MER57A-int LTR ERV1 4301 5620 -1917 405 0 0 0 chrX 142901825 142901870 -34072270 + (TG)n Simple_repeat Simple_repeat 2 46 0 16376 145 22 26 chrX 142901870 142903421 -34070719 + MER57A-int LTR ERV1 5620 7155 -382 700 101 25 34 chrX 142903423 142903542 -34070598 + LTR54B LTR ERV1 14 131 -367 1732 125 12 0 chrX 142903542 142903798 -34070342 + MER57A-int LTR ERV1 7279 7537 0 1845 214 8 2 chrX 142903802 142904199 -34069941 + MER57A LTR ERV1 5 403 0 28 0 0 0 chrX 142905978 142906006 -34068134 + AT_rich Low_complexity Low_complexity 1 28 0 377 286 83 26 chrX 142906023 142906362 -34067778 + L1M4 LINE L1 2133 2490 -3656 3110 237 64 130 chrX 142906378 142908009 -34066131 + L1MCa LINE L1 5 1742 -4822 2280 80 0 45 chrX 142908009 142908323 -34065817 + AluSx SINE Alu 1 300 -12 194 61 0 30 chrX 142908330 142908363 -34065777 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3110 237 64 130 chrX 142908363 142909503 -34064637 + L1MCa LINE L1 1748 2911 -3653 1522 269 39 82 chrX 142909513 142910181 -34063959 + L1M4 LINE L1 10 648 -6382 404 292 22 32 chrX 142910225 142910410 -34063730 + L1M4 LINE L1 1816 1998 -5032 5399 163 36 20 chrX 142910415 142911026 -34063114 + L1MA9 LINE L1 4994 5594 -718 243 0 0 0 chrX 142911026 142911053 -34063087 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 405 0 0 0 chrX 142911052 142911097 -34063043 + (TA)n Simple_repeat Simple_repeat 1 45 0 5399 163 36 20 chrX 142911053 142911238 -34062902 + L1MA9 LINE L1 5594 5775 -537 2000 156 16 38 chrX 142911238 142911610 -34062530 + THE1B LTR MaLR 1 364 0 11685 90 2 4 chrX 142911610 142913192 -34060948 + THE1B-int LTR MaLR 1 1580 0 2080 127 21 58 chrX 142913192 142913570 -34060570 + THE1B LTR MaLR 1 364 0 5399 163 36 20 chrX 142913570 142914110 -34060030 + L1MA9 LINE L1 5774 6311 -1 2522 34 3 0 chrX 142914134 142914426 -34059714 - AluY SINE Alu -17 294 2 257 287 19 19 chrX 142914971 142915079 -34059061 + L1ME LINE L1 4881 4988 -1158 23 0 0 0 chrX 142915308 142915331 -34058809 + AT_rich Low_complexity Low_complexity 1 23 0 268 305 0 11 chrX 142915434 142915529 -34058611 + L1ME LINE L1 5487 5580 -586 2151 114 7 0 chrX 142916096 142916403 -34057737 - AluSg1 SINE Alu 0 309 1 2601 246 22 0 chrX 142916404 142917090 -34057050 - L1P LINE L1 -745 5401 4701 3804 221 25 14 chrX 142917090 142918031 -34056109 + L1P LINE L1 3750 4701 -1445 315 328 70 70 chrX 142918797 142919525 -34054615 + L1M4 LINE L1 3692 4419 -2687 21 36 0 0 chrX 142919525 142919553 -34054587 + AT_rich Low_complexity Low_complexity 1 28 0 249 211 18 0 chrX 142919885 142919942 -34054198 + L1M4 LINE L1 4811 4868 -2238 2406 52 0 0 chrX 142920256 142920546 -34053594 - AluY SINE Alu -21 290 1 307 284 148 11 chrX 142922165 142922341 -34051799 - MIR SINE MIR -58 204 5 21 0 0 0 chrX 142922521 142922542 -34051598 + AT_rich Low_complexity Low_complexity 1 21 0 899 305 49 56 chrX 142922561 142922788 -34051352 - L2 LINE L2 -10 3303 3076 261 0 0 0 chrX 142922788 142922817 -34051323 + (TG)n Simple_repeat Simple_repeat 1 29 0 899 305 49 56 chrX 142922817 142923303 -34050837 - L2 LINE L2 -237 3076 2599 1996 132 7 0 chrX 142923615 142923904 -34050236 - AluSx SINE Alu -21 291 1 216 0 0 0 chrX 142924277 142924301 -34049839 + (TA)n Simple_repeat Simple_repeat 2 25 0 373 306 65 16 chrX 142924651 142924840 -34049300 + MIR SINE MIR 56 256 -6 4164 143 37 61 chrX 142925304 142926136 -34048004 - L1PB4 LINE L1 -2 6154 5343 4516 61 20 13 chrX 142926138 142927166 -34046974 + MER11A LTR ERVK 1 1266 0 3665 211 35 2 chrX 142927167 142927207 -34046933 - L1PB4 LINE L1 -801 5345 5308 203 88 29 0 chrX 142927207 142927241 -34046899 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3665 211 35 2 chrX 142927241 142928056 -34046084 - L1PB4 LINE L1 -838 5308 4462 1270 279 14 18 chrX 142928054 142928500 -34045640 + L1PA15-16 LINE L1 1873 2319 -3827 * 2657 235 18 35 chrX 142928491 142929292 -34044848 + L1 LINE L1 2581 3367 -2779 306 67 0 0 chrX 142929297 142929342 -34044798 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 342 248 23 78 chrX 142931543 142931572 -34042568 - MIR SINE MIR -30 232 203 2012 154 91 10 chrX 142931572 142931968 -34042172 - MSTA LTR MaLR 0 428 1 342 248 23 78 chrX 142931968 142932067 -34042073 - MIR SINE MIR -59 203 111 1455 304 36 12 chrX 142932067 142932560 -34041580 + LTR33 LTR ERVL 1 505 -16 4647 255 35 43 chrX 142932617 142934737 -34039403 - L1MB2 LINE L1 -11 6160 4025 189 74 0 0 chrX 142934737 142934764 -34039376 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 4647 255 35 43 chrX 142934764 142935145 -34038995 - L1MB2 LINE L1 -2146 4025 3767 747 23 0 0 chrX 142935145 142935233 -34038907 - L1PA4 LINE L1 -8 6147 6060 4647 255 35 43 chrX 142935233 142935728 -34038412 - L1MB2 LINE L1 -2404 3767 3270 2045 121 10 0 chrX 142935748 142936054 -34038086 + L1PB1 LINE L1 5799 6107 -44 24 32 0 0 chrX 142936055 142936086 -34038054 + AT_rich Low_complexity Low_complexity 1 31 0 1115 204 68 11 chrX 142936086 142936350 -34037790 - L1ME1 LINE L1 -197 5969 5691 1781 141 28 90 chrX 142936353 142936934 -34037206 - MER4A LTR ERV1 -8 457 1 497 217 0 7 chrX 142936935 142937073 -34037067 - L1MB2 LINE L1 -2870 3276 3140 3453 172 80 53 chrX 142937087 142937867 -34036273 + L1MA4 LINE L1 5491 6291 -9 3840 177 19 15 chrX 142937903 142938685 -34035455 + L1MB2 LINE L1 5353 6098 -82 2229 54 0 11 chrX 142938685 142938961 -34035179 - AluY SINE Alu 0 311 39 3840 177 19 15 chrX 142938961 142939044 -34035096 + L1MB2 LINE L1 6098 6179 -1 226 343 18 24 chrX 142939295 142939464 -34034676 + HAL1b LINE L1 366 533 -815 39 22 0 0 chrX 142939965 142940011 -34034129 + AT_rich Low_complexity Low_complexity 1 46 0 193 307 148 0 chrX 142940037 142940125 -34034015 + L2 LINE L2 1871 1971 -1343 24 53 0 0 chrX 142940148 142940186 -34033954 + AT_rich Low_complexity Low_complexity 1 38 0 478 304 89 50 chrX 142940419 142941014 -34033126 - L1MC4a LINE L1 -297 5824 5323 323 297 117 56 chrX 142941123 142941389 -34032751 - L1MC4a LINE L1 -921 5225 4944 3614 169 45 45 chrX 142941990 142942672 -34031468 + MER54B LTR ERVL 1 682 -111 491 381 49 12 chrX 142942787 142943115 -34031025 - L2 LINE L2 -481 2833 2494 1706 177 0 7 chrX 142943449 142943749 -34030391 - AluJb SINE Alu -12 300 3 730 70 0 0 chrX 142944539 142944639 -34029501 + L1PA13 LINE L1 6060 6159 -4 507 308 104 25 chrX 142945198 142945630 -34028510 + L2 LINE L2 2270 2832 -482 3479 95 6 10 chrX 142945806 142946320 -34027820 - L1PA13 LINE L1 0 6163 5652 1104 37 0 0 chrX 142946320 142946452 -34027688 - L1PA2 LINE L1 -1 6154 6019 901 120 0 0 chrX 142946452 142946577 -34027563 - L1PA13 LINE L1 -503 5665 5541 3927 219 28 2 chrX 142946585 142947386 -34026754 - MSTA-int LTR MaLR -830 821 1 2023 144 123 5 chrX 142947388 142947769 -34026371 - MSTA LTR MaLR -2 426 1 425 348 112 14 chrX 142947769 142948045 -34026095 + MLT1H1 LTR MaLR 71 373 -182 2048 196 39 5 chrX 142948253 142948661 -34025479 - MSTB LTR MaLR -4 422 1 2027 136 3 0 chrX 142948677 142948985 -34025155 - AluSx SINE Alu -3 309 1 201 258 65 75 chrX 142949750 142949843 -34024297 - MIR SINE MIR -13 249 158 211 244 0 22 chrX 142949903 142949948 -34024192 - MIR3 SINE MIR -12 196 153 26 0 0 0 chrX 142950915 142950941 -34023199 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chrX 142951962 142951986 -34022154 + AT_rich Low_complexity Low_complexity 1 24 0 255 31 0 0 chrX 142952545 142952577 -34021563 + (TG)n Simple_repeat Simple_repeat 2 33 0 1287 114 0 0 chrX 142953868 142954044 -34020096 + AluSg/x SINE Alu 129 304 -8 516 72 0 0 chrX 142954458 142954527 -34019613 + (TA)n Simple_repeat Simple_repeat 2 70 0 1791 154 9 12 chrX 142955269 142955594 -34018546 + L1MA7 LINE L1 5937 6260 -31 27 0 0 0 chrX 142955616 142955643 -34018497 + AT_rich Low_complexity Low_complexity 1 27 0 324 0 0 0 chrX 142956311 142956347 -34017793 + (CA)n Simple_repeat Simple_repeat 1 36 0 401 176 0 12 chrX 142956347 142956432 -34017708 + GA-rich Low_complexity Low_complexity 2 85 0 26 0 0 0 chrX 142957240 142957266 -34016874 + AT_rich Low_complexity Low_complexity 1 26 0 6752 187 33 14 chrX 142957358 142957685 -34016455 + L1MC1 LINE L1 1 320 -6106 2306 45 0 14 chrX 142957685 142957973 -34016167 + AluY SINE Alu 1 284 -27 459 81 0 54 chrX 142957899 142957973 -34016167 + AluY SINE Alu 215 311 0 244 0 0 0 chrX 142957973 142958000 -34016140 + (CAAA)n Simple_repeat Simple_repeat 2 112 0 6752 187 33 14 chrX 142958000 142959574 -34014566 + L1MC1 LINE L1 319 2023 -4403 852 138 88 51 chrX 142959587 142959804 -34014336 + L1MC1 LINE L1 2179 2403 -4023 809 243 92 68 chrX 142959817 142960187 -34013953 - MLT1B LTR MaLR -11 379 1 8870 229 37 25 chrX 142960190 142962311 -34011829 + L1MC1 LINE L1 2408 4503 -2110 417 177 0 0 chrX 142962311 142962390 -34011750 + MADE1 DNA Mariner 2 80 0 8870 229 37 25 chrX 142962390 142964426 -34009714 + L1MC1 LINE L1 4503 6612 -1 363 287 108 23 chrX 142965017 142965146 -34008994 - MIR SINE MIR -112 150 11 2387 61 0 10 chrX 142965300 142965611 -34008529 + AluY SINE Alu 3 310 -1 9385 30 35 0 chrX 142966038 142967971 -34006169 - L1PA4 LINE L1 -3 6152 4179 233 56 0 28 chrX 142968244 142968280 -34005860 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 4997 164 9 35 chrX 142968297 142969524 -34004616 - L1PB2 LINE L1 0 6151 4956 27 29 0 0 chrX 142969562 142969596 -34004544 + AT_rich Low_complexity Low_complexity 1 34 0 674 115 10 0 chrX 142969596 142969700 -34004440 - L1PA16 LINE L1 -9 6157 6053 348 24 0 0 chrX 142969716 142969757 -34004383 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 143 0 0 chrX 142969757 142969792 -34004348 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 763 282 93 75 chrX 142970082 142970784 -34003356 - L1M4 LINE L1 -761 5385 4672 1417 161 126 3 chrX 142970796 142971004 -34003136 - L1MB2 LINE L1 -2 6169 5962 336 218 73 22 chrX 142971004 142971180 -34002960 - L1ME2 LINE L1 0 6305 5762 * 917 292 39 14 chrX 142971178 142971459 -34002681 - L1M1 LINE L1 -7051 514 227 * 2972 244 45 0 chrX 142971454 142972315 -34001825 + L1M2 LINE L1 3300 4223 -1923 1893 179 41 30 chrX 142972315 142972865 -34001275 + MLT2A2 LTR ERVL 1 554 0 293 316 21 68 chrX 143023112 143023302 -33950838 - L2 LINE L2 -502 2812 2632 24 67 0 0 chrX 143023944 143023989 -33950151 + AT_rich Low_complexity Low_complexity 1 45 0 1572 126 67 112 chrX 143024070 143024427 -33949713 - MER7A DNA MER2_type -7 339 1 251 230 108 0 chrX 143024522 143024596 -33949544 - L1MC4 LINE L1 -1348 6694 6613 195 42 0 0 chrX 143025378 143025402 -33948738 + (CA)n Simple_repeat Simple_repeat 2 25 0 360 43 0 0 chrX 143025456 143025502 -33948638 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 4125 187 36 12 chrX 143025515 143026801 -33947339 + L1M2 LINE L1 4451 5772 -519 1847 234 44 11 chrX 143026797 143027322 -33946818 + L1MB8 LINE L1 5356 5897 -281 * 1268 188 52 4 chrX 143027312 143027584 -33946556 + L1 LINE L1 3472 3756 -2390 * 1035 201 7 50 chrX 143027585 143027868 -33946272 + L1MB8 LINE L1 5908 6178 0 32 26 0 0 chrX 143027994 143028033 -33946107 + AT_rich Low_complexity Low_complexity 1 39 0 186 43 0 0 chrX 143028054 143028077 -33946063 + (TAAAAA)n Simple_repeat Simple_repeat 1 23 0 302 273 31 97 chrX 143028351 143028572 -33945568 + L1MEc LINE L1 1114 1256 -4863 310 252 0 69 chrX 143028662 143028793 -33945347 + L1MEc LINE L1 1445 1566 -4563 306 73 0 0 chrX 143029675 143029716 -33944424 + (GGA)n Simple_repeat Simple_repeat 3 43 0 2048 160 64 17 chrX 143029769 143030176 -33943964 + MSTA LTR MaLR 3 428 0 8821 185 18 28 chrX 143030176 143031844 -33942296 + MSTA-int LTR MaLR 1 1651 0 2212 171 51 5 chrX 143031844 143032253 -33941887 + MSTA LTR MaLR 1 428 0 231 146 0 0 chrX 143032253 143032294 -33941846 + (CA)n Simple_repeat Simple_repeat 1 41 0 525 302 60 51 chrX 143032352 143032822 -33941318 + L1M4 LINE L1 3348 3821 -2325 381 206 0 0 chrX 143032832 143032900 -33941240 + L1M3 LINE L1 5668 5735 -436 230 138 35 17 chrX 143033135 143033193 -33940947 + L1ME3A LINE L1 5329 5387 -775 492 257 104 27 chrX 143033198 143033420 -33940720 + L1ME3A LINE L1 5724 5962 -208 680 289 96 35 chrX 143035367 143035679 -33938461 - MLT1J LTR MaLR -157 354 24 221 352 117 41 chrX 143036128 143036273 -33937867 - L2 LINE L2 0 3272 3117 1508 218 22 14 chrX 143036306 143036668 -33937472 + MLT1A1 LTR MaLR 1 365 0 2198 227 111 28 chrX 143036668 143037281 -33936859 + MLT1A1-int LTR MaLR 1 664 -1071 332 174 43 14 chrX 143037331 143037400 -33936740 + MLT1A1-int LTR MaLR 811 881 -490 394 233 19 10 chrX 143037461 143037564 -33936576 + MLT1A1-int LTR MaLR 677 780 -955 1094 216 84 73 chrX 143037644 143038000 -33936140 + MLT1A1-int LTR MaLR 1198 1557 -178 225 367 23 23 chrX 143038030 143038207 -33935933 - L2 LINE L2 -246 3067 2891 187 216 39 10 chrX 143040176 143040278 -33933862 + (TA)n Simple_repeat Simple_repeat 1 105 0 197 108 27 0 chrX 143040292 143040329 -33933811 + (TG)n Simple_repeat Simple_repeat 1 38 0 243 100 0 20 chrX 143040329 143040379 -33933761 - LTR66 LTR ERVL -172 438 390 2789 10 0 0 chrX 143040464 143040773 -33933367 - AluYa5 SINE Alu -2 309 1 385 255 16 122 chrX 143041307 143041495 -33932645 + MIR3 SINE MIR 23 180 -28 1984 135 0 0 chrX 143041571 143041860 -33932280 - AluSx SINE Alu -11 301 13 371 325 108 50 chrX 143041870 143042304 -33931836 - L2 LINE L2 -94 3178 2739 216 308 77 0 chrX 143042421 143042486 -33931654 + L2 LINE L2 3244 3313 0 414 0 0 0 chrX 143043613 143043659 -33930481 + (GA)n Simple_repeat Simple_repeat 1 46 0 541 358 31 4 chrX 143044446 143044700 -33929440 + MIR SINE MIR 2 262 0 203 229 21 0 chrX 143045409 143045457 -33928683 + (TA)n Simple_repeat Simple_repeat 1 49 0 1331 350 11 6 chrX 143046647 143047116 -33927024 + MLT2F LTR ERVL 32 502 -161 883 213 28 28 chrX 143047120 143047374 -33926766 - L1 LINE L1 -992 5154 4901 279 259 0 0 chrX 143047431 143047516 -33926624 + (TA)n Simple_repeat Simple_repeat 1 85 0 385 281 67 18 chrX 143047594 143047758 -33926382 + L1ME LINE L1 5647 5818 -344 2458 151 3 0 chrX 143047820 143048191 -33925949 + L1PB2 LINE L1 5 376 -7205 * 5665 179 13 7 chrX 143048190 143050123 -33924017 + L1PB2 LINE L1 2495 7586 -3 413 256 44 38 chrX 143050212 143050372 -33923768 + L2 LINE L2 3150 3310 -3 19813 196 11 7 chrX 143050372 143054586 -33919554 + L1PA13 LINE L1 1239 5470 -693 2228 65 0 10 chrX 143054586 143054879 -33919261 - L1PA6 LINE L1 -7 6147 5858 4217 109 31 37 chrX 143054879 143055583 -33918557 + L1PA13 LINE L1 5461 6160 -3 2131 114 0 13 chrX 143055897 143056205 -33917935 + AluSx SINE Alu 1 304 -8 368 298 29 35 chrX 143056313 143056536 -33917604 - ERVL LTR ERVL -1462 4023 3802 397 329 81 8 chrX 143056538 143056784 -33917356 - ERVL LTR ERVL -956 4808 4545 1548 322 103 12 chrX 143056871 143057693 -33916447 - ERVL LTR ERVL -1348 4416 3520 667 69 0 0 chrX 143057717 143057804 -33916336 + AluSg/x SINE Alu 168 254 -56 279 0 0 0 chrX 143057812 143057843 -33916297 + (TAA)n Simple_repeat Simple_repeat 2 32 0 605 310 50 4 chrX 143057904 143058146 -33915994 - ERVL LTR ERVL -2254 3400 3148 347 298 19 89 chrX 143059782 143059940 -33914200 + MIR SINE MIR 20 166 -96 318 356 56 65 chrX 143059975 143060298 -33913842 + L2 LINE L2 2945 3264 -8 201 323 0 15 chrX 143060547 143060612 -33913528 + L2 LINE L2 3249 3312 -1 1141 155 5 0 chrX 143061904 143062098 -33912042 + L1PB1 LINE L1 6 200 -6663 14089 192 38 20 chrX 143062100 143063974 -33910166 + L1PB1 LINE L1 636 2475 -4392 2098 129 3 0 chrX 143063974 143064269 -33909871 + AluSg SINE Alu 1 296 -14 14089 192 38 20 chrX 143064269 143068114 -33906026 + L1PB1 LINE L1 2475 6659 -208 443 193 47 87 chrX 143068156 143068306 -33905834 - MER106B DNA MER1_type -2 1057 914 187 337 153 0 chrX 143070484 143070582 -33903558 + L2 LINE L2 3160 3272 0 8502 69 3 1 chrX 143070663 143072551 -33901589 - L1PA6 LINE L1 -3 6151 4253 236 239 169 0 chrX 143072816 143072887 -33901253 - L2 LINE L2 -55 3258 3176 407 326 8 8 chrX 143072902 143073034 -33901106 - MIR SINE MIR -26 236 105 22 56 0 0 chrX 143073359 143073395 -33900745 + AT_rich Low_complexity Low_complexity 1 36 0 359 298 53 40 chrX 143073972 143074123 -33900017 + L2 LINE L2 3158 3310 -3 592 269 176 5 chrX 143074430 143074623 -33899517 + MIR SINE MIR 16 241 -21 695 204 48 32 chrX 143074762 143074948 -33899192 - MER53 DNA DNA 0 189 1 270 229 0 0 chrX 143075662 143075732 -33898408 + (TA)n Simple_repeat Simple_repeat 2 71 0 285 51 0 0 chrX 143075771 143075810 -33898330 + (CA)n Simple_repeat Simple_repeat 2 40 0 597 322 118 25 chrX 143075899 143076262 -33897878 + L2 LINE L2 2917 3313 0 193 339 0 0 chrX 143076272 143076337 -33897803 - MIR SINE MIR 0 262 198 351 270 119 62 chrX 143076916 143077142 -33896998 - L3 LINE CR1 -1 1576 1338 192 204 91 0 chrX 143077288 143077332 -33896808 + L2 LINE L2 3224 3271 -1 246 375 39 16 chrX 143081253 143081381 -33892759 - L2 LINE L2 0 3272 3142 243 368 22 44 chrX 143081413 143081475 -33892665 - MER5A DNA MER1_type -1 188 126 252 0 0 0 chrX 143081475 143081503 -33892637 + (TA)n Simple_repeat Simple_repeat 2 29 0 243 368 22 44 chrX 143081503 143081576 -33892564 - MER5A DNA MER1_type -63 126 56 238 151 0 38 chrX 143081832 143081885 -33892255 + L1PA15 LINE L1 6099 6149 -16 1565 215 9 13 chrX 143082831 143083147 -33890993 + MLT1A1 LTR MaLR 1 315 -50 846 221 50 82 chrX 143083149 143083430 -33890710 - MLT1A2 LTR MaLR -102 272 1 2247 289 43 15 chrX 143083432 143084104 -33890036 - L1M4b LINE L1 -6069 790 100 249 253 40 0 chrX 143084104 143084179 -33889961 + (CATA)n Simple_repeat Simple_repeat 3 80 0 255 269 60 27 chrX 143084433 143084582 -33889558 + HAL1 LINE L1 755 908 -1599 288 281 122 79 chrX 143084638 143085237 -33888903 + HAL1 LINE L1 996 1634 -873 2516 37 0 31 chrX 143085237 143085558 -33888582 + AluY SINE Alu 1 311 0 288 281 122 79 chrX 143085558 143085694 -33888446 + HAL1 LINE L1 1634 1763 -744 312 288 53 38 chrX 143085699 143085831 -33888309 + HAL1 LINE L1 1815 1948 -559 430 202 17 59 chrX 143086721 143086840 -33887300 - L2 LINE L2 0 3313 3200 32 26 0 0 chrX 143088318 143088357 -33885783 + AT_rich Low_complexity Low_complexity 1 39 0 2032 98 29 0 chrX 143088683 143088959 -33885181 + AluSg SINE Alu 1 284 -26 272 371 20 7 chrX 143089395 143089546 -33884594 + MIR SINE MIR 2 154 -108 1371 243 186 4 chrX 143089548 143090026 -33884114 - MLT1F1 LTR MaLR 0 567 3 190 338 75 53 chrX 143090754 143090887 -33883253 - L2 LINE L2 -1 3271 3136 744 249 5 31 chrX 143091016 143091209 -33882931 - MER5A DNA MER1_type 0 189 2 240 356 72 57 chrX 143091284 143091398 -33882742 - L2 LINE L2 -451 2863 2752 1681 181 7 10 chrX 143091398 143091701 -33882439 - AluSx SINE Alu -6 306 5 240 356 72 57 chrX 143091701 143091850 -33882290 - L2 LINE L2 -562 2752 2596 2238 94 3 0 chrX 143091887 143092186 -33881954 + AluSp SINE Alu 3 302 -11 559 283 40 35 chrX 143092231 143092429 -33881711 - MIR SINE MIR -1 261 63 291 82 0 20 chrX 143092437 143092486 -33881654 + MADE1 DNA Mariner 33 80 0 5085 83 15 3 chrX 143092486 143093199 -33880941 - LTR30 LTR ERV1 0 722 1 940 306 113 50 chrX 143093628 143094108 -33880032 + L2 LINE L2 2804 3313 0 519 237 34 8 chrX 143094135 143094253 -33879887 + L2 LINE L2 3190 3310 -3 208 295 49 0 chrX 143094450 143094511 -33879629 + L2 LINE L2 3151 3214 -58 1537 173 7 15 chrX 143094659 143094931 -33879209 + AluJb SINE Alu 1 270 -42 232 316 7 29 chrX 143095218 143095357 -33878783 - L1ME LINE L1 -264 5906 5771 579 122 51 0 chrX 143095506 143095604 -33878536 + L1MB2 LINE L1 6067 6169 -2 3652 202 44 22 chrX 143095618 143096543 -33877597 - Charlie1a DNA MER1_type 0 1455 510 5368 176 34 31 chrX 143096543 143098098 -33876042 + L1MA5 LINE L1 4745 6300 0 1739 255 27 42 chrX 143098125 143098643 -33875497 - Charlie1a DNA MER1_type -945 510 1 319 325 107 6 chrX 143098648 143098817 -33875323 - L1ME LINE L1 -512 5650 5465 510 232 21 7 chrX 143098907 143099049 -33875091 - L1MC4a LINE L1 -1889 5919 5776 381 302 93 15 chrX 143099294 143099628 -33874512 - L1MC4a LINE L1 -1089 5057 4698 218 200 0 0 chrX 143099872 143099912 -33874228 + CT-rich Low_complexity Low_complexity 4 43 0 219 36 0 0 chrX 143099912 143099940 -33874200 + (CA)n Simple_repeat Simple_repeat 1 28 0 337 268 118 0 chrX 143101868 143102021 -33872119 - L1ME4a LINE L1 -1 6120 5950 635 321 82 61 chrX 143102433 143102837 -33871303 + L2 LINE L2 1691 2108 -1206 1752 178 109 25 chrX 143102837 143103230 -33870910 + MSTB LTR MaLR 1 426 0 635 321 82 61 chrX 143103230 143103298 -33870842 + L2 LINE L2 2108 2173 -1141 255 308 60 49 chrX 143103448 143103633 -33870507 + L2 LINE L2 3127 3313 0 203 147 0 0 chrX 143103802 143103836 -33870304 + (TG)n Simple_repeat Simple_repeat 1 34 0 1446 324 50 0 chrX 143104300 143104779 -33869361 + L2 LINE L2 661 1163 -2151 219 366 83 59 chrX 143104871 143105125 -33869015 + L2 LINE L2 2594 2853 -461 1629 152 0 14 chrX 143106634 143106924 -33867216 + L1PA13 LINE L1 1768 2053 -4734 473 233 31 63 chrX 143107058 143107217 -33866923 + L2 LINE L2 3159 3312 -1 5680 239 15 8 chrX 143107245 143108655 -33865485 + L1P LINE L1 1264 2682 -3464 1445 111 19 5 chrX 143108659 143108875 -33865265 - THE1C LTR MaLR -2 373 155 8006 181 28 45 chrX 143308875 143309431 -33664709 - L1M1 LINE L1 -4749 2816 2252 2433 55 0 0 chrX 143309431 143309720 -33664420 - AluY SINE Alu -22 289 1 8006 181 28 45 chrX 143309720 143310858 -33663282 - L1M1 LINE L1 -5313 2252 1151 2729 91 37 5 chrX 143310858 143310898 -33663242 - MLT2A1 LTR ERVL 0 444 407 303 85 0 0 chrX 143310898 143310945 -33663195 + (TA)n Simple_repeat Simple_repeat 1 47 0 2729 91 37 5 chrX 143310945 143311287 -33662853 - MLT2A1 LTR ERVL -37 407 50 3257 251 29 12 chrX 143311289 143312127 -33662013 - L1M1 LINE L1 -6698 867 16 258 263 28 62 chrX 143312156 143312335 -33661805 + L1ME3A LINE L1 4487 4659 -1487 * 5630 166 30 23 chrX 143312333 143312544 -33661596 + L1MA2 LINE L1 4909 5117 -1187 1859 124 0 4 chrX 143312544 143312811 -33661329 + AluSq SINE Alu 44 309 -4 5630 166 30 23 chrX 143312811 143313992 -33660148 + L1MA2 LINE L1 5117 6304 0 1076 272 123 26 chrX 143314144 143314455 -33659685 + L2 LINE L2 2814 3184 -129 1821 201 8 6 chrX 143314455 143314819 -33659321 + MER47A DNA MER2_type 2 366 0 1076 272 123 26 chrX 143314819 143314963 -33659177 + L2 LINE L2 3184 3313 0 648 284 86 57 chrX 143314988 143315498 -33658642 + L1ME3A LINE L1 4797 5321 -825 693 297 85 61 chrX 143315522 143316027 -33658113 + L1ME3A LINE L1 5391 5907 -263 2592 24 0 0 chrX 143316027 143316316 -33657824 + AluYa5 SINE Alu 1 289 -22 511 290 132 20 chrX 143316885 143317312 -33656828 + L1MB8 LINE L1 5405 5881 -297 215 306 20 41 chrX 143318054 143318152 -33655988 - MIR SINE MIR -83 179 84 28 0 0 0 chrX 143319004 143319032 -33655108 + AT_rich Low_complexity Low_complexity 1 28 0 2380 94 3 0 chrX 143319360 143319667 -33654473 + AluSp SINE Alu 1 308 -5 222 37 0 0 chrX 143320338 143320365 -33653775 + (T)n Simple_repeat Simple_repeat 1 27 0 239 282 129 48 chrX 143320909 143321033 -33653107 - MIR SINE MIR -50 212 79 22 70 0 0 chrX 143321762 143321805 -33652335 + AT_rich Low_complexity Low_complexity 1 43 0 306 279 52 52 chrX 143321893 143322065 -33652075 - L1ME3A LINE L1 -8 6162 5991 * 3022 197 55 16 chrX 143322050 143322340 -33651800 - L1MA8 LINE L1 -205 6086 5809 423 0 0 0 chrX 143322340 143322387 -33651753 + (TG)n Simple_repeat Simple_repeat 2 48 0 3022 197 55 16 chrX 143322387 143322854 -33651286 - L1MA8 LINE L1 -482 5809 5294 2161 123 45 31 chrX 143322915 143323274 -33650866 + THE1B LTR MaLR 1 364 0 404 321 52 38 chrX 143323446 143324297 -33649843 - L1ME3A LINE L1 -339 5782 4918 370 263 117 6 chrX 143324374 143324553 -33649587 + Charlie2 DNA MER1_type 2647 2845 -17 278 354 21 21 chrX 143325192 143325336 -33648804 + MER117 DNA MER1_type 15 158 -39 11618 208 14 9 chrX 143325521 143328937 -33645203 - L1PA13 LINE L1 -4 6159 2713 213 277 15 31 chrX 143330016 143330081 -33644059 + MIR3 SINE MIR 112 175 -33 335 191 123 49 chrX 143331020 143331182 -33642958 + MER96B DNA MER1_type? 1 174 -243 192 152 0 0 chrX 143331421 143331454 -33642686 + (TA)n Simple_repeat Simple_repeat 2 34 0 291 260 0 27 chrX 143331497 143331570 -33642570 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 335 279 17 17 chrX 143331570 143331807 -33642333 + (TATATG)n Simple_repeat Simple_repeat 1 237 0 263 291 23 0 chrX 143331809 143331895 -33642245 + L1MC4 LINE L1 6616 6703 -1339 244 333 0 0 chrX 143331904 143331991 -33642149 + L1MC4 LINE L1 6615 6701 -1341 230 221 70 47 chrX 143332011 143332097 -33642043 + L1MC4 LINE L1 6614 6701 -1341 200 243 0 29 chrX 143332103 143332173 -33641967 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 229 265 121 0 chrX 143332202 143332285 -33641855 + L1MC4 LINE L1 6611 6703 -1339 308 213 125 0 chrX 143332317 143332397 -33641743 - L1MC4 LINE L1 -1339 6703 6614 537 235 0 27 chrX 143332438 143332621 -33641519 + (TATG)n Simple_repeat Simple_repeat 3 180 0 233 250 29 0 chrX 143332640 143332708 -33641432 - L1MC4 LINE L1 -1339 6703 6634 229 299 65 9 chrX 143333299 143333406 -33640734 - L2 LINE L2 -214 3058 2946 378 0 0 0 chrX 143335051 143335093 -33639047 + (TG)n Simple_repeat Simple_repeat 2 43 0 519 245 20 95 chrX 143335549 143335749 -33638391 - MIR3 SINE MIR -22 186 2 2328 58 0 39 chrX 143335908 143336218 -33637922 - AluY SINE Alu -10 301 4 1243 238 150 40 chrX 143336309 143336763 -33637377 - MLT1D LTR MaLR -1 504 1 371 253 90 6 chrX 143337026 143337192 -33636948 - L1ME4a LINE L1 -1 6120 5941 684 189 14 0 chrX 143337302 143337445 -33636695 - L1ME4a LINE L1 -220 5901 5757 421 282 145 22 chrX 143338094 143338321 -33635819 - MIR SINE MIR -5 257 3 511 340 22 22 chrX 143339290 143339475 -33634665 - L3 LINE CR1 -117 1460 1276 778 291 22 9 chrX 143339536 143339759 -33634381 - MIR SINE MIR 0 262 37 383 232 40 0 chrX 143340071 143340170 -33633970 + HAL1 LINE L1 809 911 -1596 2619 182 49 24 chrX 143340602 143341134 -33633006 - L1PA16 LINE L1 -10 6156 5612 647 112 0 10 chrX 143341135 143341233 -33632907 + MER4A LTR ERV1 1 97 -567 1842 130 3 51 chrX 143341233 143341595 -33632545 + MER4A LTR ERV1 262 664 0 2698 120 85 29 chrX 143341598 143342216 -33631924 + MER4A-int LTR ERV1 1 804 -5794 1439 252 61 8 chrX 143342287 143342648 -33631492 + MER4A-int LTR ERV1 1845 2224 -4107 4123 162 65 67 chrX 143342670 143343623 -33630517 + MER4A-int LTR ERV1 198 1353 -433 417 39 0 0 chrX 143343623 143343674 -33630466 + (TG)n Simple_repeat Simple_repeat 2 52 0 4123 162 65 67 chrX 143343674 143343703 -33630437 + MER4A-int LTR ERV1 1353 1381 -405 4129 94 60 11 chrX 143343710 143344414 -33629726 + MER4A-int LTR ERV1 1756 2493 -4105 1712 184 82 22 chrX 143344111 143344497 -33629643 + LTR57-int LTR ERVL 993 1413 -3930 * 3419 153 76 49 chrX 143344497 143345170 -33628970 - LTR8 LTR ERV1 0 691 1 15854 142 94 43 chrX 143345170 143345588 -33628552 + MER4A-int LTR ERV1 2737 3132 -3466 1712 184 82 22 chrX 143345170 143345245 -33628895 + LTR57-int LTR ERVL 1413 1482 -3861 * 1154 35 0 0 chrX 143345588 143345729 -33628411 + L1PA6 LINE L1 6011 6151 -3 15854 142 94 43 chrX 143345729 143345989 -33628151 + MER4A-int LTR ERV1 3132 3377 -3221 2605 33 0 3 chrX 143345989 143346292 -33627848 - AluY SINE Alu -9 302 1 15854 142 94 43 chrX 143346292 143349283 -33624857 + MER4A-int LTR ERV1 3377 6596 -2 672 73 0 21 chrX 143349289 143349385 -33624755 + MER4A LTR ERV1 1 94 -570 1826 140 11 16 chrX 143349386 143349736 -33624404 + MER4A LTR ERV1 258 664 0 1970 195 36 2 chrX 143349740 143350468 -33623672 - L1PA16 LINE L1 -557 5609 4864 274 211 20 13 chrX 143350910 143351062 -33623078 + (TA)n Simple_repeat Simple_repeat 2 154 0 623 224 0 27 chrX 143351247 143351394 -33622746 + MER3 DNA MER1_type 5 147 -62 265 359 28 14 chrX 143351532 143351677 -33622463 + MIR3 SINE MIR 11 157 -51 557 317 10 9 chrX 143351946 143352131 -33622009 - MIR SINE MIR -63 145 2 11538 96 4 0 chrX 143353809 143356199 -33617941 - L1PA8 LINE L1 -4 6168 3749 354 262 56 24 chrX 143356744 143356870 -33617270 + L2 LINE L2 2668 2797 -517 284 266 153 32 chrX 143356886 143357010 -33617130 + MER5B DNA MER1_type 10 148 -30 25 31 0 0 chrX 143357305 143357337 -33616803 + AT_rich Low_complexity Low_complexity 1 32 0 892 334 111 57 chrX 143357337 143357581 -33616559 + L3 LINE CR1 680 909 -668 896 223 5 31 chrX 143357581 143357774 -33616366 - MER5A DNA MER1_type 0 189 2 892 334 111 57 chrX 143357774 143358374 -33615766 + L3 LINE CR1 909 1570 -7 209 323 15 0 chrX 143359638 143359703 -33614437 - MIR3 SINE MIR -12 196 131 251 114 0 0 chrX 143359712 143359756 -33614384 + L1PA6 LINE L1 6111 6154 0 232 284 0 15 chrX 143359796 143359863 -33614277 + MLT1G LTR MaLR 308 373 -217 387 0 0 0 chrX 143359903 143359946 -33614194 + (TAAA)n Simple_repeat Simple_repeat 1 43 0 243 0 0 0 chrX 143359958 143359985 -33614155 + (TA)n Simple_repeat Simple_repeat 1 27 0 377 315 18 0 chrX 143360112 143360223 -33613917 - MER81 DNA DNA -1 113 1 201 233 0 0 chrX 143360354 143360397 -33613743 + CT-rich Low_complexity Low_complexity 3 45 0 1528 174 17 35 chrX 143360434 143360721 -33613419 + AluJo SINE Alu 1 282 -30 659 211 0 0 chrX 143360721 143360747 -33613393 + FLAM_C SINE Alu 1 313 0 553 208 31 173 chrX 143360751 143361069 -33613071 - L2 LINE L2 -12 3301 3029 306 219 0 16 chrX 143361430 143361494 -33612646 + L2 LINE L2 3251 3313 0 524 309 67 22 chrX 143361522 143361791 -33612349 + L2 LINE L2 3013 3293 -20 339 352 140 11 chrX 143361845 143362109 -33612031 + L2 LINE L2 2550 2847 -467 1344 296 123 12 chrX 143362188 143363021 -33611119 + L2 LINE L2 2396 3313 0 514 299 85 0 chrX 143363345 143363509 -33610631 - MER45A DNA AcHobo 0 178 1 537 297 123 58 chrX 143365088 143365623 -33608517 + L2 LINE L2 2706 3265 -7 301 317 37 0 chrX 143365644 143365726 -33608414 + L3 LINE CR1 1381 1465 -112 280 291 71 31 chrX 143365880 143366007 -33608133 - MIR SINE MIR -43 219 88 486 280 30 12 chrX 143367424 143367592 -33606548 + MIR SINE MIR 80 250 -12 271 238 83 12 chrX 143368219 143368303 -33605837 - MIR SINE MIR -117 145 56 315 311 68 38 chrX 143368382 143368514 -33605626 + L2 LINE L2 3137 3272 0 278 65 0 22 chrX 143368705 143368751 -33605389 + (CA)n Simple_repeat Simple_repeat 1 45 0 343 330 191 16 chrX 143370209 143370648 -33603492 + L2 LINE L2 1985 2500 -814 2243 170 26 19 chrX 143370656 143371086 -33603054 + Tigger2a DNA MER2_type 1 433 -1 1807 298 87 40 chrX 143371087 143371923 -33602217 - L1MEc LINE L1 -4393 2003 1208 2355 81 7 3 chrX 143371923 143372220 -33601920 - AluSc SINE Alu -11 298 1 1807 298 87 40 chrX 143372220 143373244 -33600896 - L1MEc LINE L1 -5188 1208 55 205 274 16 0 chrX 143373408 143373470 -33600670 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 296 275 154 14 chrX 143373504 143373836 -33600304 - L1MD3 LINE L1 -165 7877 7492 2370 86 0 46 chrX 143374522 143374846 -33599294 + AluSc SINE Alu 1 309 0 1212 100 0 0 chrX 143375505 143375785 -33598355 + (TA)n Simple_repeat Simple_repeat 1 280 0 1129 177 0 30 chrX 143375841 143376044 -33598096 - AluJb SINE Alu -30 282 86 30 69 0 0 chrX 143376601 143376659 -33597481 + AT_rich Low_complexity Low_complexity 1 58 0 354 98 0 0 chrX 143377052 143377103 -33597037 + (CA)n Simple_repeat Simple_repeat 2 52 0 1968 220 52 48 chrX 143377455 143378324 -33595816 + L1ME1 LINE L1 5181 6161 -5 705 165 0 0 chrX 143378384 143378505 -33595635 + FLAM_A SINE Alu 21 141 -1 987 202 34 21 chrX 143380101 143380292 -33593848 - MLT1D LTR MaLR -16 489 293 2121 86 68 0 chrX 143380292 143380570 -33593570 + AluSg SINE Alu 1 297 -13 987 202 34 21 chrX 143380570 143380611 -33593529 - MLT1D LTR MaLR -212 293 254 1322 192 18 15 chrX 143380625 143380928 -33593212 + MER61B LTR ERV1 1 396 -28 3057 147 44 47 chrX 143380940 143381349 -33592791 + MER61B-int LTR ERV1 3 412 -4805 207 0 0 0 chrX 143381349 143381372 -33592768 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3057 147 44 47 chrX 143381372 143381760 -33592380 + MER61B-int LTR ERV1 412 840 -4377 1719 119 65 0 chrX 143381760 143381941 -33592199 + MER61B-int LTR ERV1 958 1167 -4050 183 42 0 0 chrX 143381941 143381965 -33592175 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1719 119 65 0 chrX 143381965 143382076 -33592064 + MER61B-int LTR ERV1 1167 1269 -3948 24692 95 27 14 chrX 143382085 143385859 -33588281 + MER61B-int LTR ERV1 1393 5216 -1 1186 187 14 56 chrX 143385882 143386166 -33587974 + MER61B LTR ERV1 125 396 -29 1002 212 43 0 chrX 143386195 143386426 -33587714 - MLT1D LTR MaLR -263 242 2 398 108 15 0 chrX 143387098 143387163 -33586977 + (CA)n Simple_repeat Simple_repeat 2 67 0 371 281 74 44 chrX 143387263 143387466 -33586674 - L1ME4a LINE L1 -225 5896 5688 5049 230 58 22 chrX 143388507 143392242 -33581898 + L1PB3 LINE L1 3 3063 -3799 1937 152 0 0 chrX 143392242 143392519 -33581621 + AluSx SINE Alu 1 277 -35 5049 230 58 22 chrX 143392519 143393925 -33580215 + L1PB3 LINE L1 3063 4416 -2446 859 265 45 31 chrX 143393895 143394250 -33579890 + L1PB3 LINE L1 5589 5948 -914 * 1651 166 60 38 chrX 143394257 143394624 -33579516 - THE1C LTR MaLR 0 375 1 5415 143 156 43 chrX 143394624 143395811 -33578329 - THE1C-int LTR MaLR 0 1580 260 1516 171 45 55 chrX 143395811 143396190 -33577950 - THE1C LTR MaLR 0 375 1 8042 159 55 15 chrX 143396190 143397707 -33576433 - THE1C-int LTR MaLR 0 1580 4 1797 166 15 59 chrX 143397710 143397864 -33576276 - THE1C LTR MaLR 0 375 216 2101 123 10 7 chrX 143397864 143398172 -33575968 + AluSp SINE Alu 2 310 -3 1797 166 15 59 chrX 143398172 143398409 -33575731 - THE1C LTR MaLR -159 216 1 1496 134 16 0 chrX 143398413 143398667 -33575473 - THE1C-int LTR MaLR -1320 260 3 1554 186 64 25 chrX 143398669 143399030 -33575110 - THE1C LTR MaLR 0 375 1 4862 136 14 43 chrX 143399030 143399942 -33574198 + L1PB3 LINE L1 5951 6837 -33 2255 70 0 7 chrX 143399942 143400276 -33573864 + AluY SINE Alu 1 332 0 4862 136 14 43 chrX 143400276 143400309 -33573831 + L1PB3 LINE L1 6837 6869 -1 238 227 159 23 chrX 143400745 143400833 -33573307 - L2 LINE L2 -5 3308 3209 22 0 0 0 chrX 143401066 143401088 -33573052 + AT_rich Low_complexity Low_complexity 1 22 0 5272 90 16 4 chrX 143402010 143402767 -33571373 + MER4E LTR ERV1 1 766 0 4554 109 12 26 chrX 143402767 143403501 -33570639 + MER4E-int LTR ERV1 1 724 -6034 2075 189 44 16 chrX 143405521 143406002 -33568138 + HUERS-P3 LTR ERV1 129 583 -4064 353 313 56 60 chrX 143406669 143407176 -33566964 + HUERS-P3 LTR ERV1 3374 5131 -2918 778 318 21 24 chrX 143407768 143408190 -33565950 + HUERS-P3 LTR ERV1 2138 2558 -2089 219 36 0 0 chrX 143410735 143410763 -33563377 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 253 371 106 32 chrX 143411024 143411466 -33562674 + L2 LINE L2 2281 2755 -559 347 289 179 13 chrX 143411711 143411867 -33562273 + MER5A DNA MER1_type 1 182 -7 372 94 0 0 chrX 143412642 143412659 -33561481 + (CA)n Simple_repeat Simple_repeat 1 70 0 372 94 0 0 chrX 143412659 143412712 -33561428 + (CA)n Simple_repeat Simple_repeat 2 54 0 2414 125 6 6 chrX 143413142 143413502 -33560638 + THE1B LTR MaLR 3 362 -2 184 400 0 13 chrX 143413639 143413714 -33560426 - MIR SINE MIR -104 104 31 6181 104 19 4 chrX 143414074 143415961 -33558179 - L1PA10 LINE L1 -1 6167 4270 1525 166 7 0 chrX 143415963 143416240 -33557900 + L1M1 LINE L1 2770 3048 -4517 1740 171 48 27 chrX 143416240 143416573 -33557567 - THE1B LTR MaLR -24 340 1 646 309 19 4 chrX 143416573 143416829 -33557311 + L1M1 LINE L1 3874 4133 -3432 247 155 0 0 chrX 143416830 143416888 -33557252 - LTR66 LTR ERVL -159 451 394 370 124 72 0 chrX 143416897 143417050 -33557090 + (TA)n Simple_repeat Simple_repeat 2 165 0 4801 180 44 30 chrX 143417060 143418594 -33555546 - L1M1 LINE L1 -579 5721 4165 25 90 0 0 chrX 143419580 143419647 -33554493 + AT_rich Low_complexity Low_complexity 1 67 0 27 0 0 0 chrX 143419809 143419836 -33554304 + AT_rich Low_complexity Low_complexity 1 27 0 608 215 28 20 chrX 143420761 143420969 -33553171 - MER92A LTR ERV1 0 561 267 2490 54 0 0 chrX 143421248 143421546 -33552594 - AluY SINE Alu -11 300 3 338 319 30 22 chrX 143421645 143421780 -33552360 - MIR3 SINE MIR -13 195 60 23 0 0 0 chrX 143422202 143422225 -33551915 + AT_rich Low_complexity Low_complexity 1 23 0 218 143 0 48 chrX 143422997 143423039 -33551101 + (CATA)n Simple_repeat Simple_repeat 4 43 0 42 0 0 0 chrX 143423196 143423238 -33550902 + AT_rich Low_complexity Low_complexity 1 42 0 199 332 122 15 chrX 143423238 143423373 -33550767 + MIR SINE MIR 44 196 -65 487 300 25 63 chrX 143423604 143423648 -33550492 + MIR SINE MIR 20 64 -198 2636 101 3 11 chrX 143423648 143424026 -33550114 + THE1C LTR MaLR 1 375 0 487 300 25 63 chrX 143424026 143424113 -33550027 + MIR SINE MIR 64 153 -109 5246 28 2 0 chrX 143424113 143424764 -33549376 + L1PA3 LINE L1 5522 6173 0 487 300 25 63 chrX 143424764 143424867 -33549273 + MIR SINE MIR 153 247 -15 292 224 24 0 chrX 143425189 143425274 -33548866 + (TA)n Simple_repeat Simple_repeat 2 88 0 525 386 31 17 chrX 143425745 143426038 -33548102 - L2 LINE L2 -169 3144 2848 22 70 0 0 chrX 143426118 143426161 -33547979 + AT_rich Low_complexity Low_complexity 1 43 0 6014 146 31 11 chrX 143426166 143426801 -33547339 - L1MA1 LINE L1 -4 6298 5677 3917 41 19 10 chrX 143426801 143427287 -33546853 - LTR2B LTR ERV1 0 490 1 6014 146 31 11 chrX 143427287 143427927 -33546213 - L1MA1 LINE L1 -625 5677 4998 1060 162 0 12 chrX 143427928 143428101 -33546039 - AluSg/x SINE Alu -13 299 129 16648 217 41 27 chrX 143428101 143428845 -33545295 - L1 LINE L1 -1145 6420 5688 1392 152 84 8 chrX 143428845 143429095 -33545045 + MSTA LTR MaLR 160 428 0 16648 217 41 27 chrX 143429095 143433618 -33540522 - L1 LINE L1 -1877 5688 718 214 26 51 26 chrX 143433618 143433657 -33540483 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 16648 217 41 27 chrX 143433657 143434375 -33539765 - L1 LINE L1 -6847 718 11 1212 139 42 30 chrX 143434501 143434738 -33539402 + L1MA2 LINE L1 6065 6304 0 299 111 0 19 chrX 143436581 143436635 -33537505 + (TA)n Simple_repeat Simple_repeat 1 53 0 597 286 6 18 chrX 143436682 143436853 -33537287 - MER20 DNA MER1_type 0 219 51 307 250 131 45 chrX 143436881 143437057 -33537083 + L1MEd LINE L1 974 1164 -4955 834 268 134 49 chrX 143437267 143437794 -33536346 - L2 LINE L2 -13 3300 2711 472 308 32 22 chrX 143437794 143437979 -33536161 - MER5A DNA MER1_type -1 188 2 362 320 55 0 chrX 143437982 143438110 -33536030 - L2 LINE L2 -611 2703 2569 237 357 40 32 chrX 143438667 143438793 -33535347 - MIR SINE MIR -57 151 25 315 0 0 0 chrX 143438796 143438831 -33535309 + (TG)n Simple_repeat Simple_repeat 1 35 0 235 300 0 0 chrX 143439208 143439268 -33534872 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 2330 80 0 34 chrX 143439504 143439828 -33534312 - AluSp SINE Alu 0 313 1 23 33 0 0 chrX 143441666 143441696 -33532444 + AT_rich Low_complexity Low_complexity 1 30 0 4366 96 24 0 chrX 143442005 143442632 -33531508 - L1P LINE L1 -3994 2152 1511 * 4541 99 15 0 chrX 143442631 143443300 -33530840 + L1P LINE L1 2163 2841 -3305 * 4882 91 6 1 chrX 143443298 143444001 -33530139 + L1P LINE L1 4365 5070 -1076 2294 142 13 25 chrX 143444652 143445047 -33529093 - MLT1B LTR MaLR 0 390 1 1985 168 87 13 chrX 143446432 143446825 -33527315 - MSTB LTR MaLR -4 422 1 878 246 31 41 chrX 143446976 143447230 -33526910 - MIR SINE MIR -1 261 13 453 50 0 0 chrX 143447350 143447410 -33526730 + (CA)n Simple_repeat Simple_repeat 1 60 0 24 0 0 0 chrX 143448007 143448031 -33526109 + AT_rich Low_complexity Low_complexity 1 24 0 385 334 131 43 chrX 143448526 143448873 -33525267 + L1ME4a LINE L1 5480 5872 -249 918 228 18 14 chrX 143448873 143449092 -33525048 + MER58A DNA MER1_type 4 223 -1 385 334 131 43 chrX 143449092 143449163 -33524977 + L1ME4a LINE L1 5872 5935 -186 223 158 0 0 chrX 143449943 143449981 -33524159 + MER5B DNA MER1_type 4 41 -137 189 296 12 62 chrX 143450026 143450107 -33524033 + MER5B DNA MER1_type 102 178 0 298 84 70 84 chrX 143450135 143450206 -33523934 - L1PA13 LINE L1 0 6163 6094 436 316 23 45 chrX 143450332 143450578 -33523562 - MIR SINE MIR -5 257 20 237 33 0 0 chrX 143450808 143450838 -33523302 + (CA)n Simple_repeat Simple_repeat 1 30 0 1221 188 160 7 chrX 143450838 143451131 -33523009 - MLT2C1 LTR ERVL -57 340 3 181 361 82 0 chrX 143451272 143451333 -33522807 - L2 LINE L2 -39 3233 3168 996 62 0 0 chrX 143452064 143452193 -33521947 + L1PA5 LINE L1 6023 6151 -3 528 267 203 10 chrX 143452211 143452413 -33521727 - MIR SINE MIR -2 260 20 2609 133 150 33 chrX 143453192 143453776 -33520364 + MER4A LTR ERV1 1 461 -4 763 256 38 20 chrX 143453776 143454037 -33520103 + MER4-int LTR ERV1 1368 3064 -4170 13373 145 69 42 chrX 143454039 143457849 -33516291 + MER4-int LTR ERV1 198 5147 -1451 1566 174 72 33 chrX 143457849 143458210 -33515930 - THE1C LTR MaLR 0 375 1 13373 145 69 42 chrX 143458210 143458799 -33515341 + MER4-int LTR ERV1 5147 5719 -879 301 301 77 87 chrX 143458940 143459355 -33514785 + L1MEc LINE L1 1266 1676 -4720 346 244 90 90 chrX 143459445 143459679 -33514461 - L1M4 LINE L1 -3175 2971 2738 920 329 39 31 chrX 143459782 143460171 -33513969 - LTR33 LTR ERVL -127 394 3 618 269 71 62 chrX 143460246 143460655 -33513485 - LTR33A LTR ERVL 0 523 143 2301 95 0 0 chrX 143460826 143461121 -33513019 - AluSc SINE Alu -14 295 1 364 295 78 26 chrX 143461133 143461326 -33512814 - L1M4 LINE L1 -3544 2602 2400 843 284 137 18 chrX 143461782 143462162 -33511978 - L2 LINE L2 -531 2783 2359 2048 230 46 15 chrX 143463099 143463639 -33510501 + L1MB7 LINE L1 5621 6177 -7 * 18414 186 35 15 chrX 143463636 143467251 -33506889 + L1MA2 LINE L1 9 3695 -3870 6217 160 17 3 chrX 143467248 143468938 -33505202 + L1MA2 LINE L1 6009 7723 0 * 219 36 0 0 chrX 143469311 143469339 -33504801 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 294 289 50 44 chrX 143469678 143469837 -33504303 - MIR SINE MIR -51 211 52 526 299 45 11 chrX 143470167 143470344 -33503796 + MIR SINE MIR 8 190 -72 666 341 50 24 chrX 143470490 143470824 -33503316 + L2 LINE L2 2930 3271 -1 1038 186 28 14 chrX 143470859 143471074 -33503066 + MER20 DNA MER1_type 2 219 0 274 365 42 0 chrX 143471850 143471946 -33502194 - L2 LINE L2 -4 3268 3169 923 315 68 79 chrX 143471971 143472714 -33501426 + L2 LINE L2 2551 3309 -4 290 320 80 10 chrX 143472893 143472993 -33501147 + MIR SINE MIR 38 144 -64 647 73 0 42 chrX 143473925 143474035 -33500105 + L1M1 LINE L1 5676 5780 -376 3005 28 6 0 chrX 143474076 143474433 -33499707 - L1PA4 LINE L1 0 6155 5797 728 305 28 41 chrX 143474439 143474833 -33499307 + L1PBa LINE L1 829 1217 -5646 363 340 7 7 chrX 143474869 143475010 -33499130 + L1PBa LINE L1 1456 1596 -5267 3225 187 40 12 chrX 143475042 143475688 -33498452 + L1PB3 LINE L1 5 668 -5536 12350 208 35 19 chrX 143475698 143476047 -33498093 + L1PB3 LINE L1 705 1047 -5164 2222 113 0 16 chrX 143476047 143476365 -33497775 - AluSq SINE Alu 0 313 1 12350 208 35 19 chrX 143476365 143477945 -33496195 + L1PB3 LINE L1 1047 2601 -3610 212 0 36 0 chrX 143477945 143477973 -33496167 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 12350 208 35 19 chrX 143477973 143481488 -33492652 + L1PB3 LINE L1 2601 6208 -3 2356 180 21 21 chrX 143481499 143482028 -33492112 + L1MA8 LINE L1 5761 6289 -2 397 356 43 22 chrX 143482778 143483008 -33491132 - MIR SINE MIR -26 236 2 512 237 0 0 chrX 143484150 143484247 -33489893 + FLAM_A SINE Alu 14 110 -32 195 186 0 0 chrX 143484291 143484334 -33489806 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 236 387 83 5 chrX 143484351 143484555 -33489585 + L2 LINE L2 2362 2581 -733 187 119 48 48 chrX 143484563 143484605 -33489535 + L2 LINE L2 2443 2484 -830 184 381 31 88 chrX 143484713 143484873 -33489267 + L2 LINE L2 3115 3265 -7 * 363 318 183 38 chrX 143484846 143485377 -33488763 - L2 LINE L2 -3 3310 2670 28 29 0 0 chrX 143486233 143486268 -33487872 + AT_rich Low_complexity Low_complexity 1 35 0 468 330 57 22 chrX 143486617 143486844 -33487296 + MIR SINE MIR 2 236 -26 236 345 25 17 chrX 143487067 143487186 -33486954 - L2 LINE L2 -578 2736 2617 337 315 127 47 chrX 143487327 143487730 -33486410 - L2 LINE L2 -681 2633 2199 726 257 50 9 chrX 143488241 143488463 -33485677 + L2 LINE L2 3083 3313 0 2080 110 81 26 chrX 143488554 143488899 -33485241 - THE1B LTR MaLR 0 364 1 11210 109 6 1 chrX 143488899 143490472 -33483668 - THE1B-int LTR MaLR 0 1580 1 1959 128 75 20 chrX 143490472 143490817 -33483323 - THE1B LTR MaLR 0 364 1 493 264 7 57 chrX 143491462 143491602 -33482538 + L2 LINE L2 3179 3311 -2 824 228 60 51 chrX 143493978 143494227 -33479913 + MIR SINE MIR 5 262 0 23 33 0 0 chrX 143495474 143495504 -33478636 + AT_rich Low_complexity Low_complexity 1 30 0 496 238 48 41 chrX 143496021 143496168 -33477972 + MIR SINE MIR 94 241 -21 783 99 130 0 chrX 143497188 143497319 -33476821 + L1PA10 LINE L1 6016 6163 -5 466 307 36 30 chrX 143497503 143497669 -33476471 - MIR3 SINE MIR -9 199 33 207 267 69 59 chrX 143498108 143498209 -33475931 + MIR SINE MIR 159 260 -2 192 390 25 0 chrX 143498318 143498436 -33475704 - MIR3 SINE MIR -15 193 73 452 338 0 7 chrX 143499548 143499690 -33474450 - MIR SINE MIR -109 153 13 290 408 48 0 chrX 143499783 143499908 -33474232 + L2 LINE L2 3126 3256 -16 1652 213 108 0 chrX 143500224 143500577 -33473563 + MSTD LTR MaLR 1 391 -5 683 320 33 12 chrX 143500723 143500967 -33473173 + MIR SINE MIR 14 262 0 410 261 20 13 chrX 143501163 143501316 -33472824 - MIR3 SINE MIR -4 204 64 2832 176 24 54 chrX 143501982 143502685 -33471455 - L1MA5 LINE L1 -914 5232 4551 495 172 78 0 chrX 143502699 143502827 -33471313 + L1MA5 LINE L1 5254 5391 -909 2229 190 33 0 chrX 143502830 143503359 -33470781 - L1P LINE L1 -734 5427 4889 4501 135 12 4 chrX 143503359 143504087 -33470053 + L1PA13 LINE L1 5430 6163 0 1263 203 11 25 chrX 143504088 143504367 -33469773 + MLT1A1 LTR MaLR 49 584 -42 1272 127 5 0 chrX 143504375 143504572 -33469568 + L1MA5 LINE L1 5388 5585 -715 1735 184 27 3 chrX 143504606 143504982 -33469158 + L1MA5 LINE L1 5912 6296 -4 340 220 168 35 chrX 143505085 143505258 -33468882 - L2 LINE L2 -9 3304 3109 6215 144 5 22 chrX 143505375 143505861 -33468279 - L1MA2 LINE L1 0 7723 7230 2322 112 0 0 chrX 143505861 143506173 -33467967 - AluSx SINE Alu 0 312 1 6215 144 5 22 chrX 143506173 143506889 -33467251 - L1MA2 LINE L1 -493 7230 6541 3301 145 7 12 chrX 143506886 143507486 -33466654 - L1MA2 LINE L1 -1537 6028 5432 * 18337 183 21 28 chrX 143507481 143507910 -33466230 - L1MA2 LINE L1 -3794 3771 3340 2272 99 0 7 chrX 143507910 143508212 -33465928 + AluSg SINE Alu 1 300 -10 18337 183 21 28 chrX 143508212 143511572 -33462568 - L1MA2 LINE L1 -4225 3340 9 420 306 19 9 chrX 143511569 143511677 -33462463 - MER5A DNA MER1_type -80 109 1 * 234 184 145 0 chrX 143512321 143512397 -33461743 + L1MC/D LINE L1 5382 5468 -2340 2306 136 45 20 chrX 143512422 143512917 -33461223 - MLT2A2 LTR ERVL -19 514 2 24 77 0 0 chrX 143513228 143513280 -33460860 + AT_rich Low_complexity Low_complexity 1 52 0 326 271 0 24 chrX 143513395 143513480 -33460660 + MER58 DNA MER1_type 179 261 -2159 254 246 0 0 chrX 143513484 143513541 -33460599 + MER58 DNA MER1_type 2362 2418 -2 350 314 91 0 chrX 143514322 143514443 -33459697 - L2 LINE L2 0 3272 3141 37 39 0 0 chrX 143514520 143514571 -33459569 + AT_rich Low_complexity Low_complexity 1 51 0 455 216 35 35 chrX 143514581 143514734 -33459406 + L1M4 LINE L1 4889 5044 -1102 2372 90 3 0 chrX 143514734 143515046 -33459094 + AluSq SINE Alu 1 313 0 455 216 35 35 chrX 143515046 143515063 -33459077 + L1M4 LINE L1 5043 5059 -1087 589 211 0 0 chrX 143515105 143515238 -33458902 + L1M4 LINE L1 5031 5163 -983 695 254 104 7 chrX 143515260 143515547 -33458593 + Tigger8 DNA MER2_type 97 411 -255 1773 217 39 12 chrX 143515601 143516269 -33457871 + L1MC/D LINE L1 4975 5657 -745 375 244 84 91 chrX 143516319 143516713 -33457427 - L1ME4a LINE L1 -6 6115 5725 321 321 101 12 chrX 143518110 143518278 -33455862 + MIR SINE MIR 12 194 -68 2762 120 29 19 chrX 143518396 143518879 -33455261 + L1MA1 LINE L1 5814 6301 -1 198 246 0 0 chrX 143518914 143518975 -33455165 + (TA)n Simple_repeat Simple_repeat 1 61 0 4933 180 29 26 chrX 143519206 143520638 -33453502 - L1MA9 LINE L1 -1 6311 4881 270 269 10 10 chrX 143520703 143520807 -33453333 - L1MDa LINE L1 -4814 1726 1623 342 293 40 20 chrX 143520837 143520987 -33453153 - L1MDa LINE L1 -5176 1354 1202 1882 167 55 9 chrX 143521786 143522133 -33452007 - MLT1A1 LTR MaLR -2 363 1 263 317 62 14 chrX 143522256 143522401 -33451739 - L1MDa LINE L1 -6210 511 360 335 326 108 60 chrX 143522418 143522948 -33451192 - L1 LINE L1 -2629 3517 2963 3068 310 100 35 chrX 143523319 143523531 -33450609 + L2 LINE L2 1470 1667 -1646 2216 149 16 16 chrX 143523531 143523906 -33450234 + THE1C LTR MaLR 1 375 0 10032 107 30 36 chrX 143523906 143525497 -33448643 + THE1C-int LTR MaLR 1 1580 0 2083 122 25 74 chrX 143525497 143525891 -33448249 + THE1C LTR MaLR 1 375 0 3068 310 100 35 chrX 143525891 143525998 -33448142 + L2 LINE L2 1667 1766 -1547 2556 55 0 0 chrX 143525998 143526309 -33447831 - AluY SINE Alu 0 311 1 3068 310 100 35 chrX 143526309 143527710 -33446430 + L2 LINE L2 1766 3311 -2 25 0 0 0 chrX 143527852 143527877 -33446263 + AT_rich Low_complexity Low_complexity 1 25 0 6571 234 57 85 chrX 143528169 143528686 -33445454 - L1MC3 LINE L1 -85 7700 7170 261 333 11 0 chrX 143528686 143528776 -33445364 - MLT1F1 LTR MaLR -442 125 35 6571 234 57 85 chrX 143528776 143530674 -33443466 - L1MC3 LINE L1 -615 7170 5220 1239 151 48 4 chrX 143530674 143530925 -33443215 - L1MA2 LINE L1 0 6304 6043 6571 234 57 85 chrX 143530925 143531565 -33442575 - L1MC3 LINE L1 -2565 5220 4680 2138 157 11 24 chrX 143531565 143531934 -33442206 - THE1B LTR MaLR 0 364 1 6571 234 57 85 chrX 143531934 143532582 -33441558 - L1MC3 LINE L1 -3105 4680 4015 245 204 0 0 chrX 143532580 143532629 -33441511 + L1MC3 LINE L1 3943 3991 -2155 * 628 323 71 47 chrX 143532639 143533175 -33440965 - L1MC3 LINE L1 -2229 3917 3369 423 0 0 0 chrX 143533759 143533806 -33440334 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 212 288 17 17 chrX 143534567 143534626 -33439514 - MER5A DNA MER1_type -18 171 113 * 241 310 0 0 chrX 143534574 143534632 -33439508 + MER5A DNA MER1_type 37 94 -95 265 207 0 17 chrX 143534638 143534696 -33439444 + MSTA LTR MaLR 1 57 -371 12990 212 25 10 chrX 143534704 143536951 -33437189 + L1M1 LINE L1 22 2318 -5247 2405 82 0 0 chrX 143536951 143537254 -33436886 + AluSg SINE Alu 3 305 -5 12990 212 25 10 chrX 143537254 143537690 -33436450 + L1M1 LINE L1 2318 2746 -4819 1688 174 18 0 chrX 143538133 143538409 -33435731 + AluSx SINE Alu 1 281 -31 327 49 0 0 chrX 143538418 143538459 -33435681 + (TAA)n Simple_repeat Simple_repeat 1 41 0 275 285 65 32 chrX 143539201 143539324 -33434816 - MIR3 SINE MIR -14 194 68 543 274 37 0 chrX 143539570 143539734 -33434406 + L1MCa LINE L1 36 205 -6221 6128 115 138 136 chrX 143539740 143541431 -33432709 + pTR5 LTR ERV1 743 2437 -1 5104 186 70 48 chrX 143541431 143542729 -33431411 + L1MCa LINE L1 202 1528 -4898 352 229 36 64 chrX 143542709 143542849 -33431291 + L1M1 LINE L1 12 147 -7418 * 521 209 0 0 chrX 143542827 143542918 -33431222 + L1M1 LINE L1 1103 1193 -6372 3056 89 16 2 chrX 143542922 143543359 -33430781 - L1PA7 LINE L1 -1 6153 5711 279 0 0 0 chrX 143543518 143543549 -33430591 + (T)n Simple_repeat Simple_repeat 1 31 0 2058 220 84 18 chrX 143543653 143544153 -33429987 + MLT2B3 LTR ERVL 1 533 -21 447 304 98 9 chrX 143544367 143544581 -33429559 + LTR67 LTR ERVL 325 557 0 1961 218 116 2 chrX 143544629 143545078 -33429062 + MLT1D LTR MaLR 1 500 -5 451 326 156 13 chrX 143545294 143545518 -33428622 + L3 LINE CR1 1028 1283 -294 1060 206 4 74 chrX 143545621 143545878 -33428262 - MER8 DNA MER2_type 0 239 1 255 361 106 24 chrX 143545879 143546087 -33428053 + L3 LINE CR1 1295 1519 -58 480 35 0 0 chrX 143546114 143546172 -33427968 + (CA)n Simple_repeat Simple_repeat 1 58 0 697 295 36 36 chrX 143546326 143546631 -33427509 + MLT1I LTR MaLR 105 409 0 205 348 0 22 chrX 143547564 143547653 -33426487 + MIR SINE MIR 55 141 -67 22 0 0 0 chrX 143547786 143547808 -33426332 + AT_rich Low_complexity Low_complexity 1 22 0 1366 293 76 2 chrX 143548547 143548970 -33425170 + LTR16B LTR ERVL 7 460 -4 230 203 14 43 chrX 143549157 143549226 -33424914 + (TA)n Simple_repeat Simple_repeat 2 68 0 441 0 0 0 chrX 143549228 143549277 -33424863 + (TAGA)n Simple_repeat Simple_repeat 3 51 0 2709 217 37 6 chrX 143549282 143550575 -33423565 + Charlie1a DNA MER1_type 17 1455 0 339 236 0 0 chrX 143551795 143551867 -33422273 - L1MB8 LINE L1 -6 6172 6101 436 169 86 8 chrX 143551886 143552004 -33422136 - L1MB3 LINE L1 -1 6182 6044 8465 183 29 3 chrX 143552160 143554375 -33419765 + L1M1 LINE L1 3511 5783 -521 187 385 25 31 chrX 143554613 143554774 -33419366 - L2 LINE L2 -180 3092 2933 4529 195 22 27 chrX 143554952 143556165 -33417975 + L1MA9 LINE L1 5099 6312 0 639 382 14 12 chrX 143556292 143556719 -33417421 - L2 LINE L2 -854 2460 2033 290 289 62 0 chrX 143556973 143557070 -33417070 + MER20 DNA MER1_type 1 103 -116 1702 234 39 23 chrX 143557076 143557745 -33416395 + L1M4 LINE L1 4804 5476 -702 831 315 39 55 chrX 143558971 143559750 -33414390 - MLT1F1-int LTR MaLR -489 882 1 1056 236 61 51 chrX 143559750 143560080 -33414060 - MLT1F1 LTR MaLR 0 567 193 363 89 0 0 chrX 143560080 143560136 -33414004 + (CA)n Simple_repeat Simple_repeat 2 57 0 1056 236 61 51 chrX 143560136 143560309 -33413831 - MLT1F1 LTR MaLR -374 193 23 471 344 35 31 chrX 143560499 143560758 -33413382 + MIR SINE MIR 3 262 0 232 366 131 0 chrX 143562210 143562363 -33411777 - MIR3 SINE MIR -11 197 25 641 317 60 61 chrX 143562560 143562854 -33411286 + MLT1L LTR MaLR 1 294 -321 2271 93 0 46 chrX 143562854 143563177 -33410963 + AluSx SINE Alu 1 308 -4 641 317 60 61 chrX 143563177 143563400 -33410740 + MLT1L LTR MaLR 294 519 -96 860 230 10 0 chrX 143563400 143563609 -33410531 - L1MA8 LINE L1 -3 6288 6078 641 317 60 61 chrX 143563609 143563693 -33410447 + MLT1L LTR MaLR 519 602 -13 248 334 38 6 chrX 143563917 143564093 -33410047 - L1M2 LINE L1 -839 1844 1505 773 226 40 80 chrX 143564264 143564614 -33409526 + L1MC5 LINE L1 6751 7086 -875 895 331 61 19 chrX 143564616 143564978 -33409162 + REP3 LTR ERV 3 379 -183 316 217 60 0 chrX 143565011 143565094 -33409046 + REP3 LTR ERV 434 521 -41 413 225 25 44 chrX 143565106 143565266 -33408874 + L1MC5 LINE L1 7083 7239 -722 2214 121 13 46 chrX 143565315 143565703 -33408437 + THE1C LTR MaLR 1 375 0 301 206 76 22 chrX 143565703 143565795 -33408345 + L1MB7 LINE L1 4170 4266 -1880 805 208 27 36 chrX 143565799 143566020 -33408120 + L1MC2 LINE L1 6115 6333 -11 438 271 36 0 chrX 143566021 143566187 -33407953 + L1MB7 LINE L1 4252 4423 -1723 1671 228 64 53 chrX 143566194 143567611 -33406529 + L1MB7 LINE L1 4640 6184 0 319 383 27 0 chrX 143567714 143567902 -33406238 + L1 LINE L1 3733 3925 -2221 242 280 99 57 chrX 143567917 143568128 -33406012 + L1MEd LINE L1 2 221 -5898 950 210 38 10 chrX 143568470 143568761 -33405379 + L1MA1 LINE L1 3050 3348 -2798 856 113 8 0 chrX 143568765 143568889 -33405251 + THE1C LTR MaLR 251 375 0 1627 225 32 74 chrX 143568930 143569392 -33404748 + L1M1 LINE L1 13 455 -7110 * 6659 137 4 25 chrX 143569388 143570493 -33403647 + L1MA1 LINE L1 4978 6049 -253 2245 89 30 3 chrX 143570493 143570797 -33403343 + AluSx SINE Alu 1 312 0 6659 137 4 25 chrX 143570797 143571046 -33403094 + L1MA1 LINE L1 6049 6302 0 6477 120 16 30 chrX 143571037 143571969 -33402171 + L1MA2 LINE L1 5152 6066 -238 * 2125 114 0 36 chrX 143571969 143572277 -33401863 + AluSp SINE Alu 1 297 -16 6477 120 16 30 chrX 143572277 143572513 -33401627 + L1MA2 LINE L1 6066 6304 0 2237 105 0 7 chrX 143572520 143572815 -33401325 - AluSx SINE Alu -19 293 1 47 33 0 0 chrX 143572824 143572885 -33401255 + AT_rich Low_complexity Low_complexity 1 61 0 395 256 75 19 chrX 143572925 143573085 -33401055 + L1MC5 LINE L1 7758 7926 -35 620 319 57 19 chrX 143573134 143573749 -33400391 + L1M4 LINE L1 4432 5069 -1077 1424 132 15 26 chrX 143573762 143574027 -33400113 - L1MA5 LINE L1 -1 6299 6038 489 17 0 0 chrX 143574335 143574393 -33399747 + (TA)n Simple_repeat Simple_repeat 2 59 0 228 225 34 22 chrX 143574438 143574527 -33399613 + (CATATA)n Simple_repeat Simple_repeat 3 92 0 271 42 62 0 chrX 143574619 143574667 -33399473 + (CCCTG)n Simple_repeat Simple_repeat 3 53 0 437 143 0 22 chrX 143574678 143574769 -33399371 + (TTCC)n Simple_repeat Simple_repeat 2 90 0 233 286 38 19 chrX 143575169 143575274 -33398866 + MER20 DNA MER1_type 113 219 0 * 249 271 8 2 chrX 143575274 143575397 -33398743 - MLT1L LTR MaLR -460 155 1 451 316 21 32 chrX 143575403 143575593 -33398547 - MIR SINE MIR -7 255 68 444 313 52 8 chrX 143576543 143576677 -33397463 + MIR SINE MIR 12 151 -111 180 0 0 0 chrX 143577665 143577685 -33396455 + (ATG)n Simple_repeat Simple_repeat 3 22 0 26 74 0 0 chrX 143578018 143578072 -33396068 + AT_rich Low_complexity Low_complexity 1 54 0 303 343 22 39 chrX 143578649 143578827 -33395313 - L2 LINE L2 -775 2539 2365 192 77 0 0 chrX 143578827 143578853 -33395287 + (GA)n Simple_repeat Simple_repeat 1 26 0 2145 148 23 31 chrX 143579405 143579797 -33394343 + MLT1B LTR MaLR 2 390 0 2516 176 11 11 chrX 143579809 143580285 -33393855 + L1MB1 LINE L1 5644 6119 -70 2035 148 0 0 chrX 143580560 143580850 -33393290 + AluSx SINE Alu 3 292 -20 874 133 3 237 chrX 143580913 143581251 -33392889 - L1P LINE L1 -3602 2544 2286 206 125 0 0 chrX 143581637 143581669 -33392471 - L2 LINE L2 0 3272 3241 226 276 0 0 chrX 143582590 143582648 -33391492 - MIR SINE MIR -132 130 73 1034 211 16 136 chrX 143582667 143583042 -33391098 + MLT1A2 LTR MaLR 40 369 -5 6279 254 81 61 chrX 143583475 143583565 -33390575 + L1M2 LINE L1 16 103 -6746 2182 138 6 8 chrX 143583565 143583921 -33390219 - THE1A LTR MaLR 0 355 1 6279 254 81 61 chrX 143583921 143586428 -33387712 + L1M2 LINE L1 103 2664 -4185 8080 221 27 51 chrX 143586536 143587428 -33386712 - L1P3 LINE L1 -3404 3057 2146 2339 109 0 0 chrX 143587428 143587739 -33386401 - AluY SINE Alu 0 311 1 8080 221 27 51 chrX 143587739 143589886 -33384254 - L1P3 LINE L1 -4315 2146 80 * 10360 213 38 20 chrX 143589883 143592306 -33381834 + L1M1 LINE L1 606 2794 -4771 1322 208 35 99 chrX 143592312 143593026 -33381114 + L1M1 LINE L1 4293 4901 -2664 328 234 0 13 chrX 143593026 143593103 -33381037 + MLT1C LTR MaLR 392 467 0 197 313 36 0 chrX 143593103 143593186 -33380954 - MIR SINE MIR -51 211 126 247 330 11 11 chrX 143593263 143593357 -33380783 - MIR SINE MIR -138 124 31 2786 10 0 0 chrX 143593685 143593985 -33380155 + AluYb8 SINE Alu 15 314 -4 197 336 84 9 chrX 143594486 143594593 -33379547 + MIR SINE MIR 110 224 -38 * 230 253 107 0 chrX 143594575 143594650 -33379490 + MIR3 SINE MIR 88 170 -38 1840 146 4 4 chrX 143595313 143595593 -33378547 + AluSg SINE Alu 1 280 -30 1249 294 80 28 chrX 143595765 143596000 -33378140 - L2 LINE L2 0 3313 3092 1771 120 78 31 chrX 143596000 143596358 -33377782 - THE1C LTR MaLR 0 375 1 1249 294 80 28 chrX 143596358 143596601 -33377539 - L2 LINE L2 -221 3092 2863 540 0 0 0 chrX 143596601 143596661 -33377479 + (TG)n Simple_repeat Simple_repeat 2 61 0 378 0 0 0 chrX 143596660 143596702 -33377438 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 1249 294 80 28 chrX 143596661 143596977 -33377163 - L2 LINE L2 -450 2863 2526 262 333 156 28 chrX 143597867 143598008 -33376132 + MER91A DNA MER1_type 9 167 -29 384 283 81 29 chrX 143598121 143598294 -33375846 - MER5A DNA MER1_type -6 183 2 222 330 17 78 chrX 143598458 143598573 -33375567 + MER5A DNA MER1_type 13 120 -69 741 250 34 49 chrX 143598574 143598838 -33375302 - HAL1 LINE L1 -703 1804 1545 1157 286 47 50 chrX 143599045 143600058 -33374082 - L1MEc LINE L1 -4569 2256 1078 316 209 30 0 chrX 143600088 143600155 -33373985 - L1ME1 LINE L1 -47 6119 6051 233 152 0 22 chrX 143600160 143600206 -33373934 + MADE1 DNA Mariner 6 50 -30 1374 264 88 39 chrX 143600216 143600808 -33373332 - L1ME2 LINE L1 -116 6048 5428 502 340 53 24 chrX 143600931 143601307 -33372833 - L1MEc LINE L1 -5969 856 470 645 251 111 59 chrX 143601324 143601767 -33372373 - HAL1 LINE L1 -1071 1436 971 267 204 31 2 chrX 143601843 143601919 -33372221 - L1M4b LINE L1 -4190 2818 2691 388 309 36 10 chrX 143602330 143602524 -33371616 - L1M4b LINE L1 -4574 2564 2366 2185 133 69 5 chrX 143602529 143602949 -33371191 - L1MA3 LINE L1 -6 7718 7272 7590 192 7 6 chrX 143602953 143604529 -33369611 - L1MA3 LINE L1 -857 6708 5132 4072 153 7 31 chrX 143604530 143605364 -33368776 - L1MA3 LINE L1 -3995 3570 2757 1763 113 104 12 chrX 143605365 143605691 -33368449 - L1MA3 LINE L1 -5079 2486 2131 672 279 28 16 chrX 143605682 143605933 -33368207 - L1M4b LINE L1 -4722 2237 1984 * 567 135 10 10 chrX 143605935 143606031 -33368109 + MER4A LTR ERV1 3 98 -566 1323 180 20 33 chrX 143606031 143606381 -33367759 + MER4A LTR ERV1 261 664 0 2667 228 70 22 chrX 143606388 143607397 -33366743 - L1M4b LINE L1 -4879 1976 941 517 314 22 0 chrX 143607497 143607634 -33366506 - L1M4b LINE L1 -6200 659 520 1467 152 9 126 chrX 143607664 143608028 -33366112 - L1M2 LINE L1 -470 5821 5500 2448 87 35 90 chrX 143608047 143608471 -33365669 - MER4A LTR ERV1 -3 661 261 705 101 0 10 chrX 143608471 143608570 -33365570 - MER4A LTR ERV1 -566 98 1 490 120 0 0 chrX 143608570 143608645 -33365495 - L1M2 LINE L1 -893 5407 5333 3720 238 37 11 chrX 143608672 143609491 -33364649 - MER21B LTR ERV1 -5 858 19 1566 206 53 18 chrX 143609665 143610155 -33363985 - L1 LINE L1 -777 5369 4890 981 71 0 0 chrX 143610265 143610391 -33363749 - L1P3 LINE L1 -458 5714 5589 * 12328 185 44 13 chrX 143610363 143611625 -33362515 + L1M1 LINE L1 1150 2373 -5192 198 0 0 0 chrX 143611625 143611647 -33362493 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 12328 185 44 13 chrX 143611647 143613913 -33360227 + L1M1 LINE L1 2373 5670 -1895 1992 139 41 46 chrX 143613913 143614279 -33359861 - THE1B LTR MaLR 0 364 1 808 195 51 25 chrX 143614279 143614459 -33359681 + L1M1 LINE L1 5666 5855 -1710 4275 88 7 8 chrX 143614459 143615047 -33359093 - LTR14C LTR ERVK 0 587 1 808 195 51 25 chrX 143615047 143615102 -33359038 + L1M1 LINE L1 5855 5907 -1658 1459 259 36 5 chrX 143615208 143615647 -33358493 + L1PB4 LINE L1 2639 3096 -3752 1923 145 7 0 chrX 143615647 143615957 -33358183 + AluSx SINE Alu 1 312 0 1459 259 36 5 chrX 143615957 143616085 -33358055 + L1PB4 LINE L1 3096 3219 -3629 1587 208 7 3 chrX 143616087 143616376 -33357764 - AluJb SINE Alu -22 290 1 6777 225 16 28 chrX 143616376 143618274 -33355866 + L1PB4 LINE L1 3454 5328 -1520 5984 133 25 30 chrX 143618319 143619353 -33354787 + L1P LINE L1 15 1043 -5103 3551 136 17 0 chrX 143619342 143619923 -33354217 + L1P3 LINE L1 1104 1694 -4767 * 6156 53 0 1 chrX 143619897 143620825 -33353315 + L1P2 LINE L1 4894 5820 -649 3978 150 8 30 chrX 143620825 143620886 -33353254 + L1PB4 LINE L1 6130 6191 -667 1989 113 11 25 chrX 143620886 143621169 -33352971 + AluSq SINE Alu 1 279 -34 180 0 0 0 chrX 143621169 143621189 -33352951 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 3978 150 8 30 chrX 143621189 143621870 -33352270 + L1PB4 LINE L1 6189 6858 0 423 347 0 30 chrX 143622103 143622270 -33351870 + MER5B DNA MER1_type 17 178 0 368 262 40 7 chrX 143622617 143622766 -33351374 - MER103 DNA DNA -10 156 3 186 43 0 0 chrX 143623001 143623024 -33351116 + (TAA)n Simple_repeat Simple_repeat 1 23 0 238 65 22 22 chrX 143623116 143623162 -33350978 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 691 240 35 18 chrX 143623169 143623340 -33350800 - MIR SINE MIR -88 174 1 211 262 126 29 chrX 143623828 143623949 -33350191 - MIR SINE MIR -74 134 3 384 287 110 24 chrX 143624449 143624658 -33349482 + L1ME LINE L1 5526 5752 -369 217 130 20 100 chrX 143625048 143625148 -33348992 + T-rich Low_complexity Low_complexity 1 92 0 856 238 38 81 chrX 143625360 143625730 -33348410 + L2 LINE L2 2959 3312 -1 1867 165 7 89 chrX 143625744 143626169 -33347971 - MLT1B LTR MaLR 0 390 1 465 200 0 0 chrX 143627416 143627516 -33346624 - L1MA7 LINE L1 -3 6288 6189 1114 173 5 0 chrX 143627516 143627718 -33346422 - L1MA7 LINE L1 -380 5920 5718 319 349 12 82 chrX 143628546 143628801 -33345339 + L2 LINE L2 2923 3159 -113 5222 259 79 31 chrX 143628801 143630086 -33344054 - L1MCa LINE L1 -1214 5350 4128 304 68 339 0 chrX 143630086 143630145 -33343995 + MADE1 DNA Mariner 2 80 0 5222 259 79 31 chrX 143630145 143630781 -33343359 - L1MCa LINE L1 -2436 4128 3524 202 0 29 57 chrX 143630781 143630816 -33343324 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 6253 24 0 0 chrX 143630818 143631540 -33342600 - L1PA3 LINE L1 -3 6152 5431 5222 259 79 31 chrX 143631540 143631686 -33342454 - L1MCa LINE L1 -3040 3524 3386 1289 232 62 25 chrX 143631686 143632044 -33342096 + MLT1A2 LTR MaLR 2 372 -2 5222 259 79 31 chrX 143632044 143632269 -33341871 - L1MCa LINE L1 -3178 3386 2943 521 244 24 21 chrX 143632298 143632538 -33341602 - L1MCa LINE L1 -3724 2840 2594 * 15061 219 18 13 chrX 143632537 143635907 -33338233 - L1PA15 LINE L1 -21 7582 4150 195 42 0 0 chrX 143635907 143635931 -33338209 + (TTG)n Simple_repeat Simple_repeat 1 24 0 15061 219 18 13 chrX 143635931 143638372 -33335768 - L1PA15 LINE L1 -3453 4150 1725 2937 249 109 56 chrX 143638371 143639539 -33334601 - L1MCa LINE L1 -4098 2647 1542 * 2227 118 0 0 chrX 143639539 143639843 -33334297 - AluSx SINE Alu -8 304 1 2937 249 109 56 chrX 143639843 143641017 -33333123 - L1MCa LINE L1 -5203 1542 134 2743 96 0 0 chrX 143641017 143641381 -33332759 - THE1B LTR MaLR 0 364 1 2937 249 109 56 chrX 143641381 143641468 -33332672 - L1MCa LINE L1 -6611 134 53 1474 267 26 21 chrX 143641984 143642636 -33331504 + L1ME1 LINE L1 2687 3341 -2805 3773 189 19 4 chrX 143642639 143643317 -33330823 + L1PA12 LINE L1 2 1500 -6081 2770 283 35 20 chrX 143643338 143644220 -33329920 + L1PA12 LINE L1 1043 1937 -5644 15781 231 12 8 chrX 143644277 143648313 -33325827 + L1PA12 LINE L1 2470 6524 -1060 541 264 0 71 chrX 143648310 143648564 -33325576 + L1ME1 LINE L1 3813 4048 -2098 * 1867 174 17 31 chrX 143648567 143648646 -33325494 + MLT2D LTR ERVL 9 88 -326 1541 192 7 17 chrX 143648646 143648964 -33325176 - AluJb SINE Alu 0 312 5 1867 174 17 31 chrX 143648964 143649235 -33324905 + MLT2D LTR ERVL 88 354 -60 222 37 0 0 chrX 143649258 143649285 -33324855 + (CA)n Simple_repeat Simple_repeat 2 28 0 3274 257 42 39 chrX 143649376 143651462 -33322678 + L1ME1 LINE L1 4078 6161 -5 2073 91 40 3 chrX 143651752 143652049 -33322091 - AluSx SINE Alu -4 308 1 184 237 0 0 chrX 143652629 143652667 -33321473 - L2 LINE L2 0 3313 3276 223 409 0 11 chrX 143652860 143652948 -33321192 - L2 LINE L2 -30 3242 3156 1743 206 22 6 chrX 143652992 143653351 -33320789 - MLT1A1 LTR MaLR 0 365 1 2081 209 43 0 chrX 143653355 143653775 -33320365 - MLT1A1-int LTR MaLR -4 1731 1294 222 118 0 0 chrX 143653812 143653846 -33320294 + (A)n Simple_repeat Simple_repeat 1 34 0 282 122 0 0 chrX 143653939 143653980 -33320160 + MLT1A2 LTR MaLR 1 41 -333 * 747 272 24 0 chrX 143653977 143654183 -33319957 - MER58 DNA MER1_type -130 211 1 3350 136 70 3 chrX 143654608 143655253 -33318887 + L1M1 LINE L1 2901 3588 -3977 1776 219 91 50 chrX 143655701 143656318 -33317822 + LTR48B LTR ERV1 3 644 0 711 305 34 13 chrX 143657139 143657375 -33316765 - MIR SINE MIR -2 260 20 2240 89 6 19 chrX 143658103 143658418 -33315722 - AluY SINE Alu 0 311 1 2123 116 3 0 chrX 143658489 143658782 -33315358 + AluSx SINE Alu 1 294 -18 1213 196 13 13 chrX 143659267 143659583 -33314557 - L1M LINE L1 -829 5317 5008 343 252 41 27 chrX 143659647 143659794 -33314346 - L1M LINE L1 -2377 5408 5260 939 309 85 52 chrX 143659848 143660330 -33313810 - L2 LINE L2 -358 2956 2459 316 103 52 0 chrX 143660741 143660799 -33313341 + LTR48 LTR ERV1 672 732 -55 299 156 67 78 chrX 143660767 143660857 -33313283 + MER34 LTR ERV1 449 537 -5 * 2417 268 144 39 chrX 143660862 143661253 -33312887 - L2 LINE L2 -856 2458 2109 1430 155 59 25 chrX 143661253 143661575 -33312565 + L1MA8 LINE L1 5959 6291 0 2417 268 144 39 chrX 143661575 143661799 -33312341 - L2 LINE L2 -1205 2109 1910 3091 149 6 2 chrX 143661799 143662294 -33311846 + LOR1a LTR ERV1 1 497 0 2417 268 144 39 chrX 143662294 143662847 -33311293 - L2 LINE L2 -1404 1910 1166 280 296 9 28 chrX 143663031 143663139 -33311001 - HAL1 LINE L1 -1588 919 814 2264 81 7 3 chrX 143663286 143663581 -33310559 - AluSp SINE Alu -15 298 3 438 257 10 10 chrX 143663587 143663688 -33310452 - MER5B DNA MER1_type 0 178 78 2535 66 0 0 chrX 143663714 143664019 -33310121 + AluY SINE Alu 3 307 -4 788 280 72 67 chrX 143664222 143664668 -33309472 + LTR37B LTR ERV1 5 452 -16 2077 145 0 3 chrX 143665880 143666191 -33307949 + AluSx SINE Alu 1 310 -2 488 290 38 35 chrX 143666251 143666543 -33307597 - LTR16C LTR ERVL -4 487 84 24 0 0 0 chrX 143667017 143667041 -33307099 + AT_rich Low_complexity Low_complexity 1 24 0 1301 266 50 60 chrX 143667449 143667621 -33306519 - L1M4 LINE L1 -2095 4051 3879 5548 109 30 6 chrX 143667621 143668496 -33305644 + L1MA1 LINE L1 5404 6299 -3 1301 266 50 60 chrX 143668496 143669067 -33305073 - L1M4 LINE L1 -2267 3879 3316 2770 136 20 22 chrX 143669067 143669672 -33304468 + MER4E LTR ERV1 1 766 0 2177 245 59 75 chrX 143669672 143669929 -33304211 - L1M4 LINE L1 -2827 3319 3059 2445 132 18 42 chrX 143669929 143670376 -33303764 - L1MA1 LINE L1 0 6302 5867 2177 245 59 75 chrX 143670376 143671275 -33302865 - L1M4 LINE L1 -3087 3059 2182 495 168 79 0 chrX 143671313 143671414 -33302726 + MER57A LTR ERV1 295 403 0 3443 212 24 49 chrX 143671414 143672277 -33301863 + MER57A-int LTR ERV1 1 842 -6695 1909 134 13 67 chrX 143672355 143672729 -33301411 + MER4A LTR ERV1 1 354 -310 504 176 214 23 chrX 143672794 143672925 -33301215 + MER4C LTR ERV1 300 455 -10 751 200 148 67 chrX 143672939 143673484 -33300656 + MER4C-int LTR ERV1 1 673 -5925 320 314 33 41 chrX 143673506 143673627 -33300513 + MER4B-int LTR ERV1 369 488 -6270 303 183 0 33 chrX 143673844 143673904 -33300236 + MER4B-int LTR ERV1 751 808 -5790 2438 137 3 16 chrX 143674238 143674618 -33299522 - THE1C LTR MaLR 0 375 1 7861 162 38 32 chrX 143674618 143676189 -33297951 - THE1C-int LTR MaLR 0 1580 1 2423 133 5 5 chrX 143676189 143676564 -33297576 - THE1C LTR MaLR 0 375 1 12003 147 64 23 chrX 143678770 143681231 -33292909 - MER4A-int LTR ERV1 -222 6376 3815 4041 143 41 35 chrX 143681230 143682140 -33292000 - MER4A-int LTR ERV1 -2923 3675 2772 * 3751 143 37 51 chrX 143682140 143682841 -33291299 + LTR8 LTR ERV1 1 691 0 4041 143 41 35 chrX 143682841 143684229 -33289911 - MER4A-int LTR ERV1 -3826 2772 199 1190 237 83 21 chrX 143684252 143684590 -33289550 - MER4A-int LTR ERV1 -4119 2212 1854 2824 111 225 14 chrX 143684662 143685275 -33288865 - MER4A-int LTR ERV1 -5790 808 1 1786 119 49 17 chrX 143685277 143685813 -33288327 - MER4A LTR ERV1 0 664 1 1341 217 56 42 chrX 143685813 143685901 -33288239 + MER21B-int LTR ERV1 1272 1357 -2834 2345 146 3 3 chrX 143685901 143686265 -33287875 + THE1B LTR MaLR 1 364 0 1341 217 56 42 chrX 143686265 143686536 -33287604 + MER21B-int LTR ERV1 1357 1636 -2555 507 259 70 0 chrX 143686614 143686757 -33287383 + MER21B-int LTR ERV1 1638 1790 -2401 3186 256 48 5 chrX 143686839 143687608 -33286532 + MER21B-int LTR ERV1 1674 2475 -1716 561 52 0 0 chrX 143687623 143687700 -33286440 + (TA)n Simple_repeat Simple_repeat 2 78 0 6614 224 54 18 chrX 143687709 143689251 -33284889 + MER21B-int LTR ERV1 2548 4144 -47 639 238 26 126 chrX 143689328 143689597 -33284543 + MER21B LTR ERV1 3 244 -619 273 247 0 47 chrX 143689753 143689838 -33284302 + MER21A LTR ERV1 496 576 -355 10274 116 9 7 chrX 143689982 143692310 -33281830 + L1PA8A LINE L1 3797 6126 -5 665 115 57 16 chrX 143692353 143692475 -33281665 + LTR54 LTR ERV1 384 510 0 2356 77 7 0 chrX 143692559 143692857 -33281283 - AluY SINE Alu -11 300 1 368 376 68 24 chrX 143693068 143693438 -33280702 + L2 LINE L2 2218 2603 -711 369 265 59 0 chrX 143693487 143693589 -33280551 + MIR SINE MIR 9 116 -146 * 463 310 116 52 chrX 143693579 143694003 -33280137 + L2 LINE L2 2623 3074 -198 11846 187 53 34 chrX 143694688 143698828 -33275312 - L1MA1 LINE L1 -8 7713 3498 638 213 55 22 chrX 143698823 143699006 -33275134 - L1MA1 LINE L1 -7350 215 27 * 288 235 70 9 chrX 143698998 143699113 -33275027 + L1ME3A LINE L1 6040 6161 -9 * 369 356 8 0 chrX 143699462 143699594 -33274546 + L2 LINE L2 3181 3313 0 21 0 0 0 chrX 143699624 143699645 -33274495 + AT_rich Low_complexity Low_complexity 1 21 0 242 364 55 0 chrX 143700880 143700990 -33273150 + MIR3 SINE MIR 59 174 -34 29 47 0 0 chrX 143701055 143701098 -33273042 + AT_rich Low_complexity Low_complexity 1 43 0 1592 196 19 10 chrX 143701285 143701596 -33272544 + MLT1A1 LTR MaLR 52 365 0 181 222 89 0 chrX 143701741 143701786 -33272354 + MIR SINE MIR 203 251 -11 195 114 0 0 chrX 143701798 143701833 -33272307 + (TGG)n Simple_repeat Simple_repeat 3 37 0 524 234 120 18 chrX 143702893 143703060 -33271080 + MLT1E3 LTR MaLR 4 187 -406 8024 180 75 45 chrX 143703070 143704708 -33269432 - MER52A LTR ERV1 0 1755 68 291 260 13 13 chrX 143705151 143705228 -33268912 - MER52A LTR ERV1 -1678 77 1 1203 264 19 55 chrX 143705231 143705425 -33268715 + MLT1E3 LTR MaLR 199 398 -226 1907 134 11 14 chrX 143705425 143705734 -33268406 - AluSx SINE Alu 0 308 1 1203 264 19 55 chrX 143705734 143705936 -33268204 + MLT1E3 LTR MaLR 398 617 -7 930 204 32 36 chrX 143706352 143706572 -33267568 - MER20 DNA MER1_type 0 219 1 341 139 0 10 chrX 143706967 143707027 -33267113 - MER52A LTR ERV1 -967 311 204 489 297 79 33 chrX 143708029 143708517 -33265623 - L1ME4a LINE L1 -104 6017 5508 225 65 0 0 chrX 143708686 143708717 -33265423 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chrX 143708994 143709029 -33265111 + AT_rich Low_complexity Low_complexity 1 35 0 245 315 50 25 chrX 143709309 143709509 -33264631 - L1ME4a LINE L1 -1455 4691 4487 34 42 0 0 chrX 143709758 143709806 -33264334 + AT_rich Low_complexity Low_complexity 1 48 0 2465 138 36 14 chrX 143709814 143710233 -33263907 - MSTA LTR MaLR 0 428 1 181 227 0 0 chrX 143710448 143710492 -33263648 + L2 LINE L2 3262 3305 -8 777 174 28 94 chrX 143710675 143710887 -33263253 - MIR SINE MIR -43 219 22 183 42 0 0 chrX 143711714 143711738 -33262402 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 471 18 0 0 chrX 143711737 143711793 -33262347 + (TG)n Simple_repeat Simple_repeat 2 57 0 3790 266 32 16 chrX 143713240 143714874 -33259266 + L1M1 LINE L1 12 2353 -5212 12873 199 68 25 chrX 143714896 143715331 -33258809 + L1MA3 LINE L1 670 1085 -6639 2295 189 19 2 chrX 143715331 143715750 -33258390 - MSTB LTR MaLR 0 426 1 8353 201 14 7 chrX 143715750 143717389 -33256751 - MSTB-int LTR MaLR 0 1651 1 1998 214 24 5 chrX 143717391 143717803 -33256337 - MSTB LTR MaLR -2 424 5 12873 199 68 25 chrX 143717803 143720689 -33253451 + L1MA3 LINE L1 1085 3845 -3879 2485 60 0 0 chrX 143720689 143720989 -33253151 - AluY SINE Alu -11 300 1 12873 199 68 25 chrX 143720989 143724727 -33249413 + L1MA3 LINE L1 3845 7714 -10 1235 178 19 22 chrX 143724754 143725024 -33249116 + L1 LINE L1 4609 4877 -1269 2257 162 30 7 chrX 143725028 143725461 -33248679 - LTR47B LTR ERVL 0 443 1 269 217 17 0 chrX 143725467 143725527 -33248613 - LOR1-int LTR ERV1 -4082 4038 3978 1524 175 68 17 chrX 143725836 143726128 -33248012 - AluJb SINE Alu -5 307 1 344 372 19 41 chrX 143726255 143726618 -33247522 - LTR47B-int LTR ERVL -1779 4268 3914 445 314 55 40 chrX 143726836 143727204 -33246936 - LTR47B-int LTR ERVL -1831 3512 3195 819 340 33 30 chrX 143727209 143727821 -33246319 - LTR47B-int LTR ERVL -2851 2634 1854 402 310 13 32 chrX 143729607 143729765 -33244375 - LTR47B-int LTR ERVL -5174 169 15 2405 173 21 7 chrX 143729785 143730212 -33243928 - LTR47B LTR ERVL -6 437 5 2128 193 15 72 chrX 143730215 143730658 -33243482 + L1MA9 LINE L1 4876 5343 -957 1897 108 0 102 chrX 143730658 143730992 -33243148 + AluSx SINE Alu 1 300 -12 189 0 0 0 chrX 143730992 143731013 -33243127 + (TA)n Simple_repeat Simple_repeat 2 22 0 2128 193 15 72 chrX 143731013 143731517 -33242623 + L1MA9 LINE L1 5342 5679 -621 7752 19 0 0 chrX 143731517 143732595 -33241545 + L1PA3 LINE L1 5074 6151 -4 2128 193 15 72 chrX 143732595 143733178 -33240962 + L1MA9 LINE L1 5679 6294 -6 180 77 0 0 chrX 143733180 143733206 -33240934 + (TA)n Simple_repeat Simple_repeat 1 26 0 275 0 29 0 chrX 143733223 143733258 -33240882 + (TG)n Simple_repeat Simple_repeat 2 37 0 885 266 38 15 chrX 143733863 143734126 -33240014 + L2 LINE L2 2442 2710 -604 2020 294 66 40 chrX 143734130 143735280 -33238860 + L1MEc LINE L1 48 1227 -5169 1390 278 66 41 chrX 143735284 143735346 -33238794 + L1MEc LINE L1 1300 1359 -5037 2092 126 0 0 chrX 143735346 143735639 -33238501 + AluSg SINE Alu 1 293 -17 1390 278 66 41 chrX 143735639 143736479 -33237661 + L1MEc LINE L1 1359 2225 -4171 239 238 16 16 chrX 143736586 143736649 -33237491 - MER2 DNA MER2_type -271 74 12 236 250 31 16 chrX 143736667 143736731 -33237409 + L1M4 LINE L1 348 412 -6130 1280 255 48 61 chrX 143736734 143737110 -33237030 + L2 LINE L2 2775 3148 -165 1837 178 11 32 chrX 143737110 143737480 -33236660 + MLT1A1 LTR MaLR 4 365 0 1280 255 48 61 chrX 143737480 143737641 -33236499 + L2 LINE L2 3148 3309 -4 708 273 81 49 chrX 143737891 143738239 -33235901 + L2 LINE L2 1894 2252 -1062 5551 229 48 8 chrX 143738290 143739482 -33234658 + ERVL LTR ERVL 2 1241 -4523 332 252 46 69 chrX 143739488 143739750 -33234390 - MER65A LTR ERV1 0 445 190 1882 194 60 61 chrX 143739849 143740370 -33233770 + MLT2B1 LTR ERVL 1 520 0 952 335 60 19 chrX 143740378 143740864 -33233276 + L2 LINE L2 2806 3311 -2 650 260 77 31 chrX 143742004 143742072 -33232068 + MER63A DNA MER1_type 6 69 -1619 2262 90 44 9 chrX 143742072 143742415 -33231725 + THE1A LTR MaLR 1 355 0 650 260 77 31 chrX 143742415 143742542 -33231598 + MER63A DNA MER1_type 69 210 0 447 252 16 32 chrX 143742977 143743100 -33231040 + L2 LINE L2 3191 3311 -2 962 110 7 0 chrX 143743759 143743904 -33230236 + MER4A LTR ERV1 1 146 -518 8339 230 19 7 chrX 143743904 143745654 -33228486 + L1PB4 LINE L1 31 1802 -5763 9888 114 32 40 chrX 143745675 143747265 -33226875 + THE1B-int LTR MaLR 1 1578 -2 2420 128 8 0 chrX 143747267 143747626 -33226514 + THE1B LTR MaLR 1 362 -2 3077 137 11 18 chrX 143747626 143748179 -33225961 + L1PB4 LINE L1 2433 2981 -4584 1454 209 24 0 chrX 143748172 143748512 -33225628 + L1PB4 LINE L1 4612 4959 -2606 * 1019 175 14 12 chrX 143748896 143749117 -33225023 + L1MA4 LINE L1 5847 6057 -243 3205 149 45 77 chrX 143749986 143750352 -33223788 + L1PB4 LINE L1 6758 7134 -441 297 0 0 0 chrX 143750352 143750385 -33223755 + (TG)n Simple_repeat Simple_repeat 1 33 0 3205 149 45 77 chrX 143750385 143750855 -33223285 + L1PB4 LINE L1 7134 7568 -7 189 0 0 0 chrX 143752515 143752536 -33221604 + (A)n Simple_repeat Simple_repeat 1 21 0 204 262 0 0 chrX 143753590 143753632 -33220508 - L2 LINE L2 -90 3223 3182 674 272 107 82 chrX 143754124 143754930 -33219210 + HAL1 LINE L1 1567 2392 -115 928 50 100 0 chrX 143754944 143755064 -33219076 + AluYa5 SINE Alu 1 132 -179 273 237 52 21 chrX 143755478 143755575 -33218565 - MIR SINE MIR -50 212 113 349 275 0 0 chrX 143757183 143757263 -33216877 - L2 LINE L2 0 3313 3234 5046 179 46 52 chrX 143757276 143758297 -33215843 - L1PA16 LINE L1 -4 6162 5137 1651 166 12 35 chrX 143758297 143758616 -33215524 - AluSx SINE Alu 0 312 1 5046 179 46 52 chrX 143758616 143759778 -33214362 - L1PA16 LINE L1 -1029 5137 4015 879 161 12 0 chrX 143759992 143760160 -33213980 - L1MC3 LINE L1 -1 7784 7615 1455 122 50 29 chrX 143760162 143760400 -33213740 + THE1B LTR MaLR 122 364 0 3173 283 100 37 chrX 143760431 143760834 -33213306 - L1P5 LINE L1 -693 5458 5082 1785 183 43 3 chrX 143760834 143761184 -33212956 + THE1B LTR MaLR 1 364 0 9766 129 36 16 chrX 143761185 143762732 -33211408 + THE1B-int LTR MaLR 2 1580 0 2224 143 25 8 chrX 143762732 143763090 -33211050 + THE1B LTR MaLR 1 364 0 3173 283 100 37 chrX 143763090 143764252 -33209888 - L1P5 LINE L1 -1069 5082 3995 358 161 0 0 chrX 143764252 143764314 -33209826 - MLT1A1 LTR MaLR -4 361 300 3173 283 100 37 chrX 143764314 143765700 -33208440 - L1P5 LINE L1 -2156 3995 2246 502 193 41 2 chrX 143765702 143765820 -33208320 - MLT1A1 LTR MaLR 0 420 276 321 26 0 0 chrX 143765821 143765859 -33208281 + (CA)n Simple_repeat Simple_repeat 2 39 0 4280 140 50 28 chrX 143765863 143766570 -33207570 - L1PA15 LINE L1 -118 6047 5319 2080 110 36 0 chrX 143766570 143766851 -33207289 - AluSx SINE Alu -21 291 1 4280 140 50 28 chrX 143766851 143766966 -33207174 - L1PA15 LINE L1 -846 5319 5208 5664 144 35 44 chrX 143766972 143768086 -33206054 - MER4B-int LTR ERV1 -5460 1298 195 1250 255 54 11 chrX 143768116 143768469 -33205671 - MER4B-int LTR ERV1 -4119 2212 1845 337 130 11 87 chrX 143768505 143768597 -33205543 - MER4B-int LTR ERV1 -5763 835 751 2226 135 99 13 chrX 143768660 143769137 -33205003 - MER4B-int LTR ERV1 -6036 562 1 1903 189 3 0 chrX 143769140 143769479 -33204661 - MER4B LTR ERV1 0 610 271 562 244 152 0 chrX 143769836 143770000 -33204140 - MER5A DNA MER1_type 0 189 1 490 279 80 10 chrX 143770018 143770219 -33203921 + MER58C DNA MER1_type 1 215 0 1466 178 200 11 chrX 143771441 143771801 -33202339 + MSTA LTR MaLR 1 428 0 2649 134 7 0 chrX 143771803 143772214 -33201926 + MSTA-int LTR MaLR 3 416 -1164 406 248 43 43 chrX 143772233 143772394 -33201746 + L1MC4 LINE L1 7740 7900 -142 26 30 0 0 chrX 143772665 143772698 -33201442 + AT_rich Low_complexity Low_complexity 1 33 0 183 139 0 0 chrX 143774322 143774358 -33199782 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 24 85 0 0 chrX 143774418 143774477 -33199663 + AT_rich Low_complexity Low_complexity 1 59 0 262 322 120 48 chrX 143774646 143774938 -33199202 + L2 LINE L2 3000 3312 -1 5435 113 8 24 chrX 143774965 143775851 -33198289 + L1MA3 LINE L1 5434 6305 0 22 0 0 0 chrX 143775866 143775888 -33198252 + AT_rich Low_complexity Low_complexity 1 22 0 294 271 31 16 chrX 143775982 143776111 -33198029 + L1MEd LINE L1 1020 1150 -4969 356 313 109 50 chrX 143776122 143776461 -33197679 + HAL1 LINE L1 1316 1674 -833 495 275 8 8 chrX 143776830 143776950 -33197190 + L2 LINE L2 3189 3308 -5 1852 207 76 99 chrX 143777289 143777986 -33196154 + LTR68 LTR ERV1 6 686 -54 33 74 0 28 chrX 143777987 143778095 -33196045 + AT_rich Low_complexity Low_complexity 1 105 0 2193 116 0 3 chrX 143778238 143778541 -33195599 - AluSx SINE Alu -10 302 1 591 280 0 0 chrX 143778780 143778898 -33195242 + FLAM_A SINE Alu 1 118 -15 1499 208 66 14 chrX 143778917 143779264 -33194876 - MLT1A1 LTR MaLR 0 365 1 355 311 68 34 chrX 143779309 143780129 -33194011 + L1M4 LINE L1 3906 4753 -1393 2933 198 40 57 chrX 143780159 143780804 -33193336 + L1MA4 LINE L1 2 635 -4693 2325 42 0 0 chrX 143780810 143781093 -33193047 - L1PA5 LINE L1 -1 6153 5871 509 82 0 0 chrX 143781093 143781166 -33192974 + L1P LINE L1 3678 3750 -2396 305 242 0 0 chrX 143781164 143781300 -33192840 + L1MA4 LINE L1 627 794 -4534 * 8239 187 44 20 chrX 143781296 143782254 -33191886 + L1MA4 LINE L1 3596 4530 -1952 1986 116 0 34 chrX 143782254 143782568 -33191572 - AluSg SINE Alu 0 304 1 8239 187 44 20 chrX 143782568 143784406 -33189734 + L1MA4 LINE L1 4530 6475 -7 382 251 98 16 chrX 143784589 143784772 -33189368 + L1M4 LINE L1 5033 5230 -916 1313 136 5 0 chrX 143785235 143785434 -33188706 + L1P LINE L1 606 805 -5341 311 325 9 18 chrX 143785534 143785648 -33188492 + MER5A DNA MER1_type 58 170 -19 210 208 0 0 chrX 143786241 143786289 -33187851 + (CA)n Simple_repeat Simple_repeat 2 49 0 1433 234 40 47 chrX 143786292 143786399 -33187741 + MER97a DNA MER1_type? 186 292 -602 3712 113 0 4 chrX 143786399 143786928 -33187212 - MER1A DNA MER1_type 0 527 1 1433 234 40 47 chrX 143786928 143786948 -33187192 + MER97a DNA MER1_type? 292 311 -583 2181 37 7 0 chrX 143786948 143787218 -33186922 + L1PA4 LINE L1 5884 6155 0 1433 234 40 47 chrX 143787218 143787512 -33186628 + MER97a DNA MER1_type? 311 605 -289 480 270 109 31 chrX 143787816 143788109 -33186031 + MER97c DNA MER1_type? 775 1090 0 320 242 88 88 chrX 143788211 143788393 -33185747 + MLT1J2 LTR MaLR 267 448 -2 238 337 105 11 chrX 143788699 143788794 -33185346 + MIR SINE MIR 29 132 -76 253 241 0 35 chrX 143788799 143788886 -33185254 - LTR67 LTR ERVL -16 541 458 404 50 0 17 chrX 143789255 143789315 -33184825 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 212 221 174 35 chrX 143789803 143789889 -33184251 + MIR3 SINE MIR 68 165 -43 * 219 280 0 0 chrX 143789882 143789932 -33184208 + L2 LINE L2 3204 3253 -19 188 254 198 32 chrX 143790063 143790189 -33183951 - MIR SINE MIR -3 259 113 794 146 0 29 chrX 143790467 143790638 -33183502 + (TTCC)n Simple_repeat Simple_repeat 4 169 0 1855 211 28 35 chrX 143790862 143791293 -33182847 - MSTC LTR MaLR 0 428 1 1058 165 147 21 chrX 143791692 143791977 -33182163 + MER33 DNA MER1_type 4 324 0 306 341 24 16 chrX 143792427 143792553 -33181587 - MIR3 SINE MIR -37 171 45 22 0 0 0 chrX 143793187 143793209 -33180931 + AT_rich Low_complexity Low_complexity 1 22 0 4082 197 41 4 chrX 143793306 143794190 -33179950 - L1MB4 LINE L1 -6 6174 5260 27 29 0 0 chrX 143794531 143794565 -33179575 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chrX 143794602 143794631 -33179509 + AT_rich Low_complexity Low_complexity 1 29 0 710 289 39 0 chrX 143794716 143794920 -33179220 + MIR SINE MIR 37 248 -14 543 260 30 14 chrX 143794920 143795082 -33179058 - L1MC/D LINE L1 -524 5625 5487 362 262 68 65 chrX 143795194 143795457 -33178683 - L1MC/D LINE L1 -775 5354 5091 386 313 73 30 chrX 143795655 143796026 -33178114 - L1MC/D LINE L1 -1027 5102 4716 574 220 38 0 chrX 143796111 143796243 -33177897 - MIR SINE MIR -10 252 116 283 218 0 0 chrX 143796367 143796422 -33177718 + MIR SINE MIR 1 55 -207 343 332 94 47 chrX 143796561 143796880 -33177260 - L1MC/D LINE L1 -5738 381 48 2030 132 29 42 chrX 143797094 143797474 -33176666 + THE1C LTR MaLR 1 375 0 9307 141 45 7 chrX 143797474 143798997 -33175143 + THE1C-int LTR MaLR 1 1580 0 2071 116 37 45 chrX 143798997 143799375 -33174765 + THE1C LTR MaLR 1 375 0 300 229 184 9 chrX 143799738 143799847 -33174293 - MLT1L LTR MaLR -364 251 124 201 94 0 0 chrX 143800282 143800314 -33173826 + (TC)n Simple_repeat Simple_repeat 1 32 0 490 337 70 12 chrX 143800880 143801123 -33173017 - MIR SINE MIR -1 261 5 259 351 16 0 chrX 143801254 143801445 -33172695 - L1M4 LINE L1 -2145 5420 5227 2535 153 22 53 chrX 143801459 143801859 -33172281 + L1MB1 LINE L1 5418 5800 -368 2619 58 0 0 chrX 143801859 143802169 -33171971 + AluY SINE Alu 1 310 -1 2535 153 22 53 chrX 143802169 143802273 -33171867 + L1MB1 LINE L1 5800 5906 -262 441 271 13 33 chrX 143802392 143802543 -33171597 - MIR SINE MIR -44 218 71 223 281 114 35 chrX 143803326 143803440 -33170700 + MIR SINE MIR 138 260 -2 1160 230 31 43 chrX 143804297 143804356 -33169784 - MER63B DNA MER1_type -627 435 377 2185 121 0 3 chrX 143804356 143804653 -33169487 - AluSg SINE Alu -14 296 1 1160 230 31 43 chrX 143804653 143804971 -33169169 - MER63B DNA MER1_type -685 377 2 287 130 0 0 chrX 143805174 143805220 -33168920 - L1M4 LINE L1 -2334 5231 5186 1779 175 3 15 chrX 143805256 143805593 -33168547 - L1 LINE L1 -1113 6452 6120 4411 186 28 30 chrX 143805622 143806478 -33167662 + THE1-int LTR MaLR 427 1280 -300 8445 167 23 25 chrX 143806589 143808282 -33165858 - L1 LINE L1 -4305 3260 1572 3180 239 25 6 chrX 143808279 143809008 -33165132 - L1 LINE L1 -6814 751 9 * 877 228 31 7 chrX 143809020 143809314 -33164826 - L1M4 LINE L1 -3932 3633 3333 320 105 26 230 chrX 143809318 143809470 -33164670 + L1MA8 LINE L1 6170 6290 -1 231 274 48 6 chrX 143809463 143809631 -33164509 + L1M4 LINE L1 2944 3118 -3028 * 419 262 28 0 chrX 143810779 143810886 -33163254 + LTR25 LTR ERV1 244 353 -441 234 196 0 39 chrX 143810960 143811011 -33163129 + MER61E LTR ERV1 117 165 -404 923 214 51 5 chrX 143811052 143811267 -33162873 + MER61E LTR ERV1 341 565 -4 302 342 103 7 chrX 143811696 143811851 -33162289 + L2 LINE L2 3103 3272 0 315 311 17 17 chrX 143811885 143812004 -33162136 + MIR SINE MIR 20 138 -70 2233 98 16 10 chrX 143812143 143812448 -33161692 + AluSg SINE Alu 2 308 -2 1233 184 0 14 chrX 143812490 143812702 -33161438 - AluJb SINE Alu -19 293 85 1914 189 6 11 chrX 143812720 143813074 -33161066 - MER74C LTR ERVL -6 454 103 1998 108 7 17 chrX 143813117 143813413 -33160727 + AluSg1 SINE Alu 1 293 -16 228 185 0 0 chrX 143813557 143813611 -33160529 + A-rich Low_complexity Low_complexity 1 54 0 5979 152 13 13 chrX 143813647 143814848 -33159292 + L1MA3 LINE L1 5101 6305 0 237 200 60 20 chrX 143816709 143816809 -33157331 + Charlie7 DNA MER1_type 2434 2537 -75 196 304 80 45 chrX 143816839 143816951 -33157189 + L2 LINE L2 2594 2709 -605 484 328 32 24 chrX 143816987 143817234 -33156906 - LTR16A LTR ERVL -21 429 181 192 77 0 0 chrX 143817500 143817526 -33156614 + (T)n Simple_repeat Simple_repeat 1 26 0 1821 145 11 0 chrX 143817844 143818127 -33156013 + AluSp SINE Alu 1 286 -27 4476 219 35 87 chrX 143818333 143819538 -33154602 + L1PA15 LINE L1 1255 2521 -4276 9393 39 8 6 chrX 143819538 143821464 -33152676 + L1PA4 LINE L1 4235 6162 0 4476 219 35 87 chrX 143821464 143821673 -33152467 + L1PA15 LINE L1 2521 2739 -4058 1107 22 15 0 chrX 143821673 143821810 -33152330 + L1PA4 LINE L1 6015 6153 -2 4476 219 35 87 chrX 143821810 143822448 -33151692 + L1PA15 LINE L1 2739 3116 -3681 1979 132 3 10 chrX 143822448 143822744 -33151396 + AluSx SINE Alu 2 295 -17 4476 219 35 87 chrX 143822744 143823509 -33150631 + L1PA15 LINE L1 3116 3919 -2878 216 86 0 0 chrX 143823509 143823544 -33150596 + (GA)n Simple_repeat Simple_repeat 1 35 0 7889 209 25 7 chrX 143823630 143825172 -33148968 + L1MA2 LINE L1 13 1582 -5983 688 200 29 0 chrX 143825190 143825365 -33148775 + L1MA2 LINE L1 4367 4546 -3019 3968 194 12 9 chrX 143825482 143827006 -33147134 + L1MA2 LINE L1 6085 7723 0 6151 228 35 23 chrX 143827022 143827377 -33146763 + L1PA15 LINE L1 3975 4324 -2473 204 40 0 0 chrX 143827377 143827402 -33146738 + (CA)n Simple_repeat Simple_repeat 2 26 0 6151 228 35 23 chrX 143827402 143828719 -33145421 + L1PA15 LINE L1 4324 5666 -1131 4763 139 39 4 chrX 143828997 143829794 -33144346 + L1PA15 LINE L1 5984 6808 -8 741 211 6 0 chrX 143830195 143830361 -33143779 - L1ME1 LINE L1 -319 5845 5679 556 212 28 9 chrX 143830364 143830635 -33143505 + L1ME1 LINE L1 5847 6162 -4 237 226 226 0 chrX 143831009 143831071 -33143069 + L2 LINE L2 3232 3307 -6 822 323 88 22 chrX 143831296 143831615 -33142525 + LTR16A LTR ERVL 105 444 -6 1576 342 37 20 chrX 143831627 143832071 -33142069 + HERV16 LTR ERVL 42 508 -4488 1019 93 0 182 chrX 143832071 143832307 -33141833 + 7SK RNA RNA 1 193 0 1576 342 37 20 chrX 143832307 143832667 -33141473 + HERV16 LTR ERVL 508 860 -4136 2000 210 62 79 chrX 143833083 143833645 -33140495 - MLT1E LTR MaLR 0 593 13 1682 311 51 61 chrX 143833652 143834828 -33139312 + HERV16 LTR ERVL 1315 2539 -2457 1185 357 68 25 chrX 143834821 143835849 -33138291 + HERV16 LTR ERVL 3541 4660 -1104 * 304 286 34 41 chrX 143835904 143836051 -33138089 + HERV16 LTR ERVL 4743 4888 -597 1735 176 3 7 chrX 143836144 143836433 -33137707 + AluJb SINE Alu 2 289 -23 5840 86 8 34 chrX 143836629 143837462 -33136678 + HSMAR1 DNA Mariner 476 1287 0 274 152 0 0 chrX 143837462 143837508 -33136632 + MLT2B1 LTR ERVL 472 517 -3 319 233 56 22 chrX 143837510 143837600 -33136540 - L1MC4 LINE L1 -1346 6696 6604 220 111 44 0 chrX 143837614 143837659 -33136481 + (TA)n Simple_repeat Simple_repeat 2 48 0 1592 148 50 24 chrX 143837673 143837970 -33136170 - MER46B DNA MER2_type 0 236 57 218 56 28 0 chrX 143837996 143838032 -33136108 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 266 203 0 14 chrX 143838044 143838118 -33136022 + (TATG)n Simple_repeat Simple_repeat 2 74 0 267 303 0 0 chrX 143838123 143838189 -33135951 - MER2 DNA MER2_type 0 345 280 1046 127 27 0 chrX 143838402 143838552 -33135588 + AluSg/x SINE Alu 132 285 -25 21 0 0 0 chrX 143838552 143838573 -33135567 + AT_rich Low_complexity Low_complexity 1 21 0 736 216 8 0 chrX 143838573 143838707 -33135433 - MER2 DNA MER2_type -209 136 2 569 199 47 66 chrX 143838995 143839251 -33134889 - L1MC5 LINE L1 -207 7754 7504 1377 215 14 4 chrX 143839267 143839546 -33134594 - AluJo SINE Alu -30 282 1 833 229 121 61 chrX 143839654 143840083 -33134057 + MLT1D LTR MaLR 20 465 -2 233 264 11 0 chrX 143840083 143840170 -33133970 - L1MC5 LINE L1 -517 7444 7357 235 282 11 64 chrX 143840594 143840782 -33133358 + T-rich Low_complexity Low_complexity 2 179 0 * 259 284 7 43 chrX 143840678 143840819 -33133321 + CT-rich Low_complexity Low_complexity 2 137 0 208 386 31 16 chrX 143841109 143841236 -33132904 - MIR SINE MIR -59 203 75 773 304 46 69 chrX 143842933 143843431 -33130709 - MLT1G3 LTR MaLR -8 547 1 748 286 131 27 chrX 143844246 143844613 -33129527 - MLT1I LTR MaLR -4 405 1 248 213 0 0 chrX 143844681 143844728 -33129412 - MLT1I LTR MaLR -362 47 1 462 251 138 46 chrX 143845844 143846039 -33128101 + MIR SINE MIR 50 262 0 281 136 23 0 chrX 143846735 143846779 -33127361 + MER20 DNA MER1_type 2 46 -173 234 0 0 0 chrX 143846915 143846941 -33127199 + (A)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chrX 143847705 143847736 -33126404 + AT_rich Low_complexity Low_complexity 1 31 0 696 232 30 12 chrX 143847742 143847910 -33126230 + MER20 DNA MER1_type 49 219 0 344 228 25 25 chrX 143847911 143847990 -33126150 + MIR SINE MIR 32 110 -152 303 85 21 0 chrX 143848179 143848226 -33125914 + MADE1 DNA Mariner 33 80 0 310 364 46 0 chrX 143848548 143848721 -33125419 + L1M4 LINE L1 2287 2467 -3679 24 32 0 0 chrX 143848745 143848776 -33125364 + AT_rich Low_complexity Low_complexity 1 31 0 265 237 93 21 chrX 143849109 143849206 -33124934 + LTR33A LTR ERVL 418 521 -2 811 130 59 18 chrX 143850140 143850309 -33123831 + MER53 DNA DNA 13 188 -1 1987 263 99 15 chrX 143850821 143851724 -33122416 + L1ME3A LINE L1 5190 6165 -5 1497 265 42 50 chrX 143851740 143852404 -33121736 + L1MC4 LINE L1 7196 7854 -188 192 77 0 0 chrX 143852452 143852478 -33121662 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 226 253 77 0 chrX 143852497 143852588 -33121552 + L1MC4 LINE L1 7945 8042 0 317 258 120 74 chrX 143852620 143852837 -33121303 + L1ME4a LINE L1 5894 6120 -1 * 884 293 95 62 chrX 143852825 143853291 -33120849 + L1M4 LINE L1 3025 3533 -2613 432 198 12 0 chrX 143853291 143853377 -33120763 + L1MC1 LINE L1 6247 6333 0 884 293 95 62 chrX 143853377 143853760 -33120380 + L1M4 LINE L1 3533 3902 -2244 3745 134 19 5 chrX 143853788 143854435 -33119705 - L1PBa LINE L1 -4682 2181 1526 826 148 0 28 chrX 143854543 143854685 -33119455 - L1MD2 LINE L1 -104 6255 6118 578 312 96 38 chrX 143855167 143855459 -33118681 - L2 LINE L2 -159 3154 2846 257 91 0 45 chrX 143855461 143855505 -33118635 - L1M3 LINE L1 -683 5651 5610 * 1259 227 22 14 chrX 143855478 143855756 -33118384 + L1MD2 LINE L1 6061 6340 -19 430 314 96 30 chrX 143855801 143856104 -33118036 - L2 LINE L2 -768 2546 2224 256 361 0 0 chrX 143856104 143856187 -33117953 - L2 LINE L2 -1418 1896 1814 1352 202 72 39 chrX 143856691 143857053 -33117087 + MLT1A2 LTR MaLR 1 374 0 428 240 89 0 chrX 143858463 143858609 -33115531 - L1ME4a LINE L1 -16 6105 5947 207 171 24 0 chrX 143858679 143858720 -33115420 - L2 LINE L2 0 3313 3272 806 236 4 92 chrX 143858731 143858960 -33115180 + MER58A DNA MER1_type 1 209 -15 364 298 130 24 chrX 143859000 143859208 -33114932 - L2 LINE L2 -54 3259 3030 3591 22 0 0 chrX 143859209 143859653 -33114487 + L1PA2 LINE L1 5718 6161 0 607 362 22 0 chrX 143859659 143859970 -33114170 - L2 LINE L2 -291 3022 2707 430 335 29 12 chrX 143860003 143860176 -33113964 + MIR SINE MIR 3 178 -84 2411 46 0 0 chrX 143860272 143860580 -33113560 + AluY SINE Alu 1 308 0 883 292 21 4 chrX 143860642 143860878 -33113262 + MIR SINE MIR 2 241 -21 285 314 47 0 chrX 143860884 143860970 -33113170 - MER91B DNA MER1_type -1 189 100 234 0 0 0 chrX 143861662 143861688 -33112452 + (A)n Simple_repeat Simple_repeat 1 26 0 2167 103 3 0 chrX 143862353 143862645 -33111495 - AluSp SINE Alu -20 293 1 26 50 0 0 chrX 143863212 143863252 -33110888 + AT_rich Low_complexity Low_complexity 1 40 0 1386 87 0 5 chrX 143863346 143863530 -33110610 - AluY SINE Alu -10 301 119 385 315 24 24 chrX 143863988 143864153 -33109987 + MIR SINE MIR 37 201 -61 354 291 77 39 chrX 143864418 143864600 -33109540 + L2 LINE L2 2216 2404 -910 1090 263 75 22 chrX 143865691 143866049 -33108091 + MLT1D LTR MaLR 126 502 -3 495 300 96 32 chrX 143866540 143866790 -33107350 - MLT1L LTR MaLR -160 455 190 2202 189 11 25 chrX 143867101 143867539 -33106601 + MSTB1 LTR MaLR 1 432 0 458 306 25 47 chrX 143867603 143867838 -33106302 - L2 LINE L2 -924 2390 2161 357 333 14 7 chrX 143867988 143868135 -33106005 - MIR SINE MIR -4 258 111 2089 138 36 33 chrX 143868138 143868501 -33105639 - THE1B LTR MaLR 0 364 1 7891 154 10 28 chrX 143868618 143868819 -33105321 + L1MA1 LINE L1 3751 3954 -2348 405 0 0 0 chrX 143868819 143868864 -33105276 + (CA)n Simple_repeat Simple_repeat 2 46 0 7891 154 10 28 chrX 143868864 143869440 -33104700 + L1MA1 LINE L1 3954 4539 -1763 2539 58 0 3 chrX 143869440 143869750 -33104390 + AluY SINE Alu 1 309 -2 7891 154 10 28 chrX 143869750 143871569 -33102571 + L1MA1 LINE L1 4539 6302 0 303 252 37 148 chrX 143871736 143872006 -33102134 - L2 LINE L2 -338 2976 2737 1101 267 18 21 chrX 143872423 143872756 -33101384 + LTR43 LTR ERV1 131 462 -140 448 336 7 7 chrX 143873237 143873377 -33100763 - MIR3 SINE MIR -40 168 29 260 324 20 10 chrX 143874495 143874597 -33099543 - MIR SINE MIR -13 249 147 1488 246 75 23 chrX 143874621 143875019 -33099121 - MLT1D LTR MaLR 0 505 87 597 160 8 42 chrX 143875296 143875415 -33098725 + MLT1C LTR MaLR 1 115 -352 2155 157 22 3 chrX 143875533 143875890 -33098250 - THE1B LTR MaLR 0 364 1 10068 119 37 9 chrX 143875890 143877426 -33096714 - THE1B-int LTR MaLR 0 1580 2 2380 120 22 3 chrX 143877427 143877784 -33096356 - THE1B LTR MaLR 0 364 1 299 341 31 8 chrX 143877825 143877954 -33096186 - L1ME LINE L1 -584 5582 5451 24 67 0 0 chrX 143879454 143879499 -33094641 + AT_rich Low_complexity Low_complexity 1 45 0 1858 214 15 6 chrX 143880141 143880596 -33093544 + MER89 LTR ERV1 2 559 0 220 265 0 0 chrX 143881380 143881429 -33092711 + (TG)n Simple_repeat Simple_repeat 2 50 0 532 181 57 0 chrX 143881700 143881805 -33092335 + MIR SINE MIR 87 197 -65 384 232 0 0 chrX 143881810 143881909 -33092231 + (TA)n Simple_repeat Simple_repeat 1 99 0 356 273 0 7 chrX 143881942 143882081 -33092059 + (TA)n Simple_repeat Simple_repeat 2 139 0 1500 182 94 26 chrX 143882835 143883186 -33090954 - THE1C LTR MaLR 0 375 1 2923 173 24 10 chrX 143885004 143885600 -33088540 + L1MB2 LINE L1 5566 6169 -2 218 93 37 56 chrX 143885960 143886014 -33088126 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 252 161 18 18 chrX 143886222 143886278 -33087862 + L1MB1 LINE L1 5980 6035 -154 * 806 99 0 8 chrX 143886275 143886396 -33087744 - L1MB2 LINE L1 -202 5969 5850 5022 175 14 12 chrX 143887333 143888698 -33085442 + L1PA16 LINE L1 4784 6146 -20 331 282 48 10 chrX 143888711 143888814 -33085326 + MER92B LTR ERV1 483 589 -47 246 195 81 46 chrX 143888816 143888903 -33085237 + MER92B LTR ERV1 547 636 0 421 257 81 110 chrX 143888948 143889283 -33084857 + MLT1H1-int LTR MaLR 1023 1347 -24 227 146 36 55 chrX 143889363 143889415 -33084725 + MLT1H1 LTR MaLR 110 160 -389 1404 238 117 5 chrX 143889415 143889826 -33084314 - MLT1C LTR MaLR -1 466 10 438 305 113 24 chrX 143889973 143890186 -33083954 + MLT1H1 LTR MaLR 322 553 -2 1423 228 194 15 chrX 143890476 143890884 -33083256 + MLT1E2 LTR MaLR 146 626 0 1781 242 144 12 chrX 143891608 143892062 -33082078 + MER76 LTR ERV 7 400 -288 180 0 0 0 chrX 143892062 143892082 -33082058 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1781 242 144 12 chrX 143892082 143892097 -33082043 + MER76 LTR ERV 400 412 -276 1723 251 42 7 chrX 143892097 143892548 -33081592 + MLT1C LTR MaLR 1 467 0 1781 242 144 12 chrX 143892548 143892668 -33081472 + MER76 LTR ERV 412 675 -13 234 303 15 15 chrX 143893345 143893418 -33080722 + MIR SINE MIR 35 99 -109 318 273 103 0 chrX 143893528 143893629 -33080511 - MIR SINE MIR -50 158 48 2399 224 5 7 chrX 143894417 143894996 -33079144 - L1MA9 LINE L1 -1007 5139 4562 * 4974 195 18 6 chrX 143894995 143896120 -33078020 + L1MA9 LINE L1 5137 6274 -38 27 29 0 0 chrX 143896120 143896154 -33077986 + AT_rich Low_complexity Low_complexity 1 34 0 1865 247 49 59 chrX 143896168 143896313 -33077827 + MER76 LTR ERV 1 146 -542 1718 197 28 6 chrX 143896313 143896668 -33077472 + MLT1A1 LTR MaLR 3 365 0 1865 247 49 59 chrX 143896668 143896855 -33077285 + MER76 LTR ERV 146 333 -355 1971 120 67 22 chrX 143896855 143897214 -33076926 - THE1C LTR MaLR 0 375 1 1865 247 49 59 chrX 143897214 143897539 -33076601 + MER76 LTR ERV 333 652 -36 252 143 0 0 chrX 143898000 143898042 -33076098 + (TA)n Simple_repeat Simple_repeat 2 43 0 384 139 0 14 chrX 143899291 143899363 -33074777 - L1M LINE L1 -936 5367 5297 * 708 220 60 5 chrX 143899356 143899574 -33074566 - L1 LINE L1 -812 5334 5105 319 235 0 25 chrX 143899727 143899808 -33074332 + MER31-int LTR ERV1 80 158 -4778 644 204 20 14 chrX 143900830 143900977 -33073163 + L1PB1 LINE L1 70 217 -6646 * 10090 186 101 12 chrX 143900953 143902957 -33071183 + L1PB1 LINE L1 1392 3216 -3651 207 0 0 0 chrX 143902957 143902980 -33071160 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10090 186 101 12 chrX 143902980 143905584 -33068556 + L1PB1 LINE L1 3216 6507 -360 350 57 0 57 chrX 143905590 143905660 -33068480 + (TA)n Simple_repeat Simple_repeat 2 67 0 2576 98 0 3 chrX 143905670 143906037 -33068103 + L1PB1 LINE L1 6498 6863 -4 937 167 17 17 chrX 143906523 143906703 -33067437 - L1M3 LINE L1 -396 5775 5596 581 262 42 46 chrX 143908052 143908289 -33065851 + MER31-int LTR ERV1 778 1013 -3923 328 307 76 94 chrX 143908638 143908701 -33065439 + L1M4c LINE L1 32 95 -6289 230 0 0 32 chrX 143908701 143908732 -33065408 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 328 307 76 94 chrX 143908732 143908997 -33065143 + L1M4c LINE L1 95 354 -6030 235 217 108 0 chrX 143909067 143909150 -33064990 + L1MB4 LINE L1 6089 6180 0 23 0 0 0 chrX 143910523 143910546 -33063594 + AT_rich Low_complexity Low_complexity 1 23 0 232 378 0 0 chrX 143910632 143910706 -33063434 + L2 LINE L2 3194 3267 -5 1839 174 28 31 chrX 143911046 143911402 -33062738 - THE1C LTR MaLR 0 375 21 9422 134 55 5 chrX 143911435 143912939 -33061201 - THE1C-int LTR MaLR 0 1580 1 2015 172 19 11 chrX 143912939 143913311 -33060829 - THE1C LTR MaLR 0 375 1 183 250 68 0 chrX 143913344 143913388 -33060752 + MIR SINE MIR 124 170 -92 201 74 0 0 chrX 143913837 143913864 -33060276 + (TC)n Simple_repeat Simple_repeat 2 28 0 261 0 0 0 chrX 143913864 143913893 -33060247 + (CA)n Simple_repeat Simple_repeat 1 29 0 243 61 0 0 chrX 143913896 143913929 -33060211 + (GA)n Simple_repeat Simple_repeat 1 33 0 1609 187 3 14 chrX 143914017 143914300 -33059840 + AluJo SINE Alu 3 282 -30 449 33 0 17 chrX 143914303 143914363 -33059777 + (TAA)n Simple_repeat Simple_repeat 2 60 0 321 306 163 7 chrX 143914363 143914510 -33059630 + MIR SINE MIR 23 192 -70 197 358 60 0 chrX 143914557 143914624 -33059516 - MIR SINE MIR -106 102 32 37 93 0 0 chrX 143915352 143915459 -33058681 + AT_rich Low_complexity Low_complexity 1 107 0 363 262 13 54 chrX 143916021 143916170 -33057970 - LTR16A LTR ERVL 0 457 315 961 378 36 11 chrX 143916173 143916781 -33057359 - ERVL LTR ERVL -621 5143 4521 339 340 10 0 chrX 143916781 143916881 -33057259 - ERVL LTR ERVL -3520 2244 2144 2586 248 89 70 chrX 143917198 143917431 -33056709 - L2 LINE L2 -823 2491 2264 2544 116 0 8 chrX 143917431 143917794 -33056346 + THE1B LTR MaLR 5 364 0 2586 248 89 70 chrX 143917794 143917828 -33056312 - L2 LINE L2 -1050 2264 2232 7050 54 1 1 chrX 143917828 143919210 -33054930 + L1PA7 LINE L1 4774 6141 -13 2586 248 89 70 chrX 143919210 143920028 -33054112 - L2 LINE L2 -1082 2232 1384 255 308 33 42 chrX 143920504 143920624 -33053516 + MER5B DNA MER1_type 1 119 -59 1570 211 65 8 chrX 143920811 143921167 -33052973 - MER101 LTR ERV1 -27 447 72 26 0 0 0 chrX 143921171 143921197 -33052943 + AT_rich Low_complexity Low_complexity 1 26 0 550 209 0 0 chrX 143921197 143921302 -33052838 - L1PA16 LINE L1 -9 6157 6053 512 134 0 62 chrX 143921306 143921418 -33052722 - L1MB3 LINE L1 0 6183 6079 602 272 110 0 chrX 143921429 143921657 -33052483 - L1MD3 LINE L1 0 7995 7743 4522 196 61 20 chrX 143921715 143922751 -33051389 - L1MA10 LINE L1 -3 6331 5254 267 325 63 8 chrX 143923153 143923279 -33050861 - L2 LINE L2 -2 3311 3179 191 194 0 0 chrX 143923729 143923760 -33050380 - MIR SINE MIR -181 81 51 186 326 0 0 chrX 143924577 143924626 -33049514 + L2 LINE L2 2595 2643 -671 413 299 26 7 chrX 143924975 143925129 -33049011 - LTR67 LTR ERVL 0 557 401 1346 28 6 16 chrX 143925157 143925339 -33048801 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 428 100 29 0 chrX 143925345 143925415 -33048725 + GA-rich Low_complexity Low_complexity 1 72 0 2206 86 0 33 chrX 143925861 143926163 -33047977 - AluSx SINE Alu -14 298 7 232 177 16 32 chrX 143926394 143926456 -33047684 + MLT1J LTR MaLR 401 461 -50 1996 145 58 9 chrX 143926809 143927153 -33046987 + MLT1A1 LTR MaLR 5 365 0 209 339 203 8 chrX 143928002 143928120 -33046020 + MIR SINE MIR 5 145 -117 1787 178 84 16 chrX 143928203 143928574 -33045566 + MSTD LTR MaLR 1 396 0 21 0 0 0 chrX 143929304 143929325 -33044815 + AT_rich Low_complexity Low_complexity 1 21 0 889 258 156 20 chrX 143931318 143931671 -33042469 + MLT1I LTR MaLR 1 401 -8 2661 88 6 3 chrX 143932387 143932741 -33041399 + THE1A LTR MaLR 1 355 0 394 289 0 9 chrX 143932921 143933035 -33041105 - MER103 DNA DNA -51 115 3 225 154 0 0 chrX 143933820 143933859 -33040281 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 328 310 52 61 chrX 143933883 143934096 -33040044 - HAL1b LINE L1 -646 702 492 294 333 0 0 chrX 143934100 143934211 -33039929 - Zaphod DNA AcHobo 0 4031 3921 536 301 78 0 chrX 143934234 143934400 -33039740 - MER115 DNA AcHobo -76 617 439 306 319 18 43 chrX 143934557 143934720 -33039420 - HAL1b LINE L1 -863 485 327 1514 100 39 2 chrX 143935782 143936024 -33038116 + L1ME LINE L1 5568 5819 -343 321 154 0 0 chrX 143936028 143936080 -33038060 + L1MC4 LINE L1 6652 6703 -1339 238 169 42 0 chrX 143936088 143936159 -33037981 + L1MCa LINE L1 1995 2068 -4358 2403 92 27 11 chrX 143936171 143936539 -33037601 + L1PB2 LINE L1 5777 6150 -1 420 292 182 10 chrX 143936807 143937016 -33037124 + MIR SINE MIR 8 252 -10 321 257 176 7 chrX 143937080 143937228 -33036912 + MER69A DNA AcHobo 1 173 -4 474 250 9 9 chrX 143937597 143937705 -33036435 + MIR3 SINE MIR 87 194 -14 338 333 22 14 chrX 143938335 143938473 -33035667 + L1MC4 LINE L1 7904 8042 0 591 309 140 23 chrX 143938554 143938939 -33035201 - L2 LINE L2 -6 3307 2878 284 162 0 29 chrX 143938947 143939015 -33035125 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 1593 315 108 36 chrX 143939074 143939453 -33034687 - L2 LINE L2 -798 2516 2165 2425 91 0 0 chrX 143939453 143939760 -33034380 + AluSc SINE Alu 1 307 -2 1593 315 108 36 chrX 143939760 143940420 -33033720 - L2 LINE L2 -1149 2165 1403 1956 122 0 41 chrX 143940876 143941197 -33032943 + AluSq SINE Alu 1 309 0 255 316 0 0 chrX 143941668 143941763 -33032377 + MIR3 SINE MIR 108 202 -6 273 263 263 26 chrX 143942471 143942623 -33031517 + MIR SINE MIR 62 249 -13 1213 181 10 0 chrX 143944431 143944635 -33029505 + MER58A DNA MER1_type 19 224 0 1700 174 7 17 chrX 143944791 143945090 -33029050 + AluJo SINE Alu 4 299 -13 475 241 90 81 chrX 143945124 143945469 -33028671 + L1ME LINE L1 5312 5659 -505 2331 49 3 21 chrX 143945614 143945970 -33028170 - AluY SINE Alu 0 351 1 187 365 125 24 chrX 143947103 143947732 -33026408 + L2 LINE L2 878 1591 -1723 697 210 72 30 chrX 143947732 143947899 -33026241 - MER96 DNA MER1_type 0 175 2 187 365 125 24 chrX 143947899 143947990 -33026150 + L2 LINE L2 1591 1671 -1643 1710 201 12 5 chrX 143948092 143948556 -33025584 + MLT2B2 LTR ERVL 1 515 0 373 306 113 55 chrX 143948791 143949137 -33025003 + L2 LINE L2 2944 3309 -4 382 324 57 84 chrX 143949150 143949412 -33024728 + L2 LINE L2 3017 3271 -1 185 347 61 0 chrX 143949977 143950075 -33024065 - MIR SINE MIR -56 206 103 925 52 185 0 chrX 143950079 143950214 -33023926 - AluY SINE Alu -5 306 147 22 56 0 0 chrX 143951032 143951068 -33023072 + AT_rich Low_complexity Low_complexity 1 36 0 326 330 69 42 chrX 143952299 143952560 -33021580 + L2 LINE L2 1522 1789 -1525 1651 133 35 30 chrX 143952560 143952899 -33021241 + L1MA8 LINE L1 5949 6289 -2 426 238 9 9 chrX 143952998 143953103 -33021037 - MER94 DNA DNA -29 105 1 262 206 29 49 chrX 143953633 143953735 -33020405 + Charlie7 DNA MER1_type 2508 2607 -5 23 0 0 0 chrX 143953771 143953794 -33020346 + AT_rich Low_complexity Low_complexity 1 23 0 1909 204 57 48 chrX 143954018 143954563 -33019577 - L1M3c LINE L1 -4800 1341 792 1511 237 23 5 chrX 143954647 143955035 -33019105 + L1 LINE L1 4816 5210 -936 1365 130 12 105 chrX 143955036 143955360 -33018780 + L1MA9 LINE L1 6019 6312 0 2180 98 0 11 chrX 143955424 143955732 -33018408 + AluSq SINE Alu 1 305 0 5187 234 14 20 chrX 143955732 143956872 -33017268 - MER66-int LTR ERV1 -2992 3684 2552 195 362 0 0 chrX 143956970 143957028 -33017112 - MIR SINE MIR 0 262 205 6751 235 36 15 chrX 143957042 143959791 -33014349 + L1PA13 LINE L1 1028 3823 -2974 264 225 50 12 chrX 143960115 143960195 -33013945 - AluYb8 SINE Alu -79 229 147 22 56 0 0 chrX 143960999 143961035 -33013105 + AT_rich Low_complexity Low_complexity 1 36 0 319 274 0 9 chrX 143961113 143961219 -33012921 - MER113 DNA MER1_type? -411 110 6 362 362 6 18 chrX 143962328 143962491 -33011649 + GA-rich Low_complexity Low_complexity 3 163 0 27 29 0 0 chrX 143962605 143962639 -33011501 + AT_rich Low_complexity Low_complexity 1 34 0 206 261 193 23 chrX 143963460 143963548 -33010592 + MIR SINE MIR 41 143 -65 672 236 165 0 chrX 143963864 143964046 -33010094 - MER58A DNA MER1_type 0 224 13 6462 212 32 8 chrX 143964341 143965656 -33008484 + L1MA2 LINE L1 22 1367 -6198 11973 167 28 22 chrX 143965659 143968454 -33005686 + L1MA2 LINE L1 3640 6458 -1265 2047 144 0 3 chrX 143968454 143968745 -33005395 + AluSx SINE Alu 3 292 -20 11973 167 28 22 chrX 143968745 143970019 -33004121 + L1MA2 LINE L1 6458 7723 0 1999 126 7 32 chrX 143970673 143970983 -33003157 - AluSx SINE Alu -9 303 2 282 112 10 82 chrX 143971417 143971515 -33002625 + (TATG)n Simple_repeat Simple_repeat 2 92 0 320 354 0 0 chrX 143971592 143971688 -33002452 + L1ME LINE L1 5484 5579 -542 21 57 0 0 chrX 143971734 143971769 -33002371 + AT_rich Low_complexity Low_complexity 1 35 0 318 248 152 16 chrX 143971867 143971992 -33002148 + L1ME4a LINE L1 5956 6097 -24 21 36 0 0 chrX 143972665 143972693 -33001447 + AT_rich Low_complexity Low_complexity 1 28 0 426 329 43 6 chrX 143972761 143972925 -33001215 - MIR3 SINE MIR 0 208 39 952 239 118 30 chrX 143973252 143973750 -33000390 - LTR28 LTR ERV1 -125 511 1 2136 156 19 6 chrX 143974324 143974684 -32999456 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chrX 143974698 143974720 -32999420 + AT_rich Low_complexity Low_complexity 1 22 0 699 112 9 9 chrX 143974896 143975003 -32999137 + FLAM_C SINE Alu 1 107 -36 314 285 91 27 chrX 143975003 143975224 -32998916 - L1ME LINE L1 -430 5723 5489 1692 290 83 21 chrX 143975251 143976655 -32997485 - L1ME LINE L1 -1031 5098 3608 327 335 91 4 chrX 143976865 143977140 -32997000 - L1ME LINE L1 -5221 898 600 231 285 99 33 chrX 143977307 143977458 -32996682 - L1ME LINE L1 -5922 197 37 1066 215 58 38 chrX 143978035 143978477 -32995663 + MER39 LTR ERV1 67 542 0 1448 196 51 98 chrX 143979473 143979963 -32994177 - MLT1C LTR MaLR 0 467 1 27 49 0 0 chrX 143980145 143980186 -32993954 + AT_rich Low_complexity Low_complexity 1 41 0 213 94 0 0 chrX 143980584 143980616 -32993524 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 434 271 62 8 chrX 143981727 143981856 -32992284 + MIR SINE MIR 58 193 -69 1418 152 58 4 chrX 143981860 143982136 -32992004 + L1MA9 LINE L1 5733 6023 -289 1802 256 130 6 chrX 143982218 143982871 -32991269 - MER21B LTR ERV1 -111 752 19 291 278 11 11 chrX 143982892 143982982 -32991158 - MER21B LTR ERV1 -773 90 1 1308 185 18 40 chrX 143982982 143983311 -32990829 + L1MA10 LINE L1 6010 6331 -3 227 114 23 0 chrX 143984600 143984644 -32989496 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 1088 242 41 14 chrX 143984776 143985102 -32989038 - MER21B LTR ERV1 -233 698 282 186 43 0 0 chrX 143985136 143985159 -32988981 + (TA)n Simple_repeat Simple_repeat 2 24 0 249 33 0 0 chrX 143985160 143985190 -32988950 + (GA)n Simple_repeat Simple_repeat 1 30 0 1620 197 0 0 chrX 143985190 143985464 -32988676 - AluJb SINE Alu -30 282 9 237 298 47 26 chrX 143986078 143986269 -32987871 - L1 LINE L1 -2228 3918 3724 646 174 135 39 chrX 143986441 143986619 -32987521 + MER20 DNA MER1_type 1 195 -24 672 299 82 39 chrX 143986662 143987076 -32987064 - L1 LINE L1 -2643 3503 3072 741 291 12 12 chrX 143987091 143987349 -32986791 + L1ME1 LINE L1 5904 6161 -5 459 301 47 13 chrX 143987367 143987603 -32986537 + L1MC5 LINE L1 7234 7477 -484 315 316 25 82 chrX 143987680 143987861 -32986279 + L1ME3A LINE L1 5934 6099 -71 741 238 28 0 chrX 143987861 143988042 -32986098 + MER5A DNA MER1_type 2 187 -2 315 316 25 82 chrX 143988042 143988104 -32986036 + L1ME3A LINE L1 6099 6163 -7 1361 248 19 35 chrX 143988183 143988615 -32985525 + MER57B LTR ERV1 1 425 -9 23 33 0 0 chrX 143989226 143989256 -32984884 + AT_rich Low_complexity Low_complexity 1 30 0 548 279 35 55 chrX 143989551 143989752 -32984388 - MIR SINE MIR -58 204 8 23 33 0 0 chrX 143990806 143990836 -32983304 + AT_rich Low_complexity Low_complexity 1 30 0 191 267 22 0 chrX 143991052 143991097 -32983043 + L2 LINE L2 3219 3264 -49 2354 43 3 17 chrX 143991711 143992010 -32982130 - AluY SINE Alu -16 295 1 218 311 42 17 chrX 143993249 143993368 -32980772 + MIR SINE MIR 138 259 -3 409 234 177 0 chrX 143994209 143994350 -32979790 - MER3 DNA MER1_type -23 186 21 3207 29 0 0 chrX 143995457 143995833 -32978307 - L1PA4 LINE L1 -3 6152 5777 2346 21 0 0 chrX 143995833 143996116 -32978024 + L1P2 LINE L1 5309 5591 -564 1047 219 32 16 chrX 143996734 143997049 -32977091 - MER33 DNA MER1_type 0 324 5 262 304 17 17 chrX 143997297 143997412 -32976728 + MIR SINE MIR 147 261 -1 1614 203 3 10 chrX 143997813 143998104 -32976036 - AluJo SINE Alu -23 289 1 666 313 99 32 chrX 143998386 143998979 -32975161 - L2 LINE L2 -4 3309 2671 823 275 126 21 chrX 143999075 143999360 -32974780 - L2 LINE L2 -972 2342 2016 2682 131 21 2 chrX 143999360 143999779 -32974361 + MSTA LTR MaLR 2 428 0 823 275 126 21 chrX 143999779 143999827 -32974313 - L2 LINE L2 -1298 2016 1974 2965 208 59 32 chrX 143999828 144000873 -32973267 + L1MB7 LINE L1 5081 6147 -37 339 210 0 0 chrX 144000884 144000965 -32973175 - L1PA13 LINE L1 0 6163 6083 2345 60 0 0 chrX 144001447 144001729 -32972411 - AluSc SINE Alu -2 307 26 473 241 60 54 chrX 144002338 144002504 -32971636 - MIR SINE MIR -10 252 86 2472 87 0 0 chrX 144002524 144002834 -32971306 - AluSg SINE Alu 0 310 1 1562 100 45 0 chrX 144003195 144003415 -32970725 - MER30 DNA MER1_type 0 230 1 803 184 81 92 chrX 144003425 144003523 -32970617 + MLT1B LTR MaLR 1 99 -291 1672 169 107 13 chrX 144003523 144003831 -32970309 - MER1B DNA MER1_type 0 337 1 803 184 81 92 chrX 144003831 144003900 -32970240 + MLT1B LTR MaLR 99 167 -223 2266 105 7 0 chrX 144003900 144004206 -32969934 + AluSx SINE Alu 1 308 -4 803 184 81 92 chrX 144004206 144004298 -32969842 + MLT1B LTR MaLR 167 258 -132 234 263 23 103 chrX 144004413 144004588 -32969552 - L2 LINE L2 -214 3058 2898 1222 176 35 27 chrX 144005101 144005357 -32968783 - THE1-int LTR MaLR -532 1048 791 2665 126 36 2 chrX 144006354 144006799 -32967341 - LTR46 LTR ERV1 0 460 1 49583 73 19 2 chrX 144006799 144010358 -32963782 - LTR46-int LTR ERV1 0 6985 3251 242 20 78 20 chrX 144010358 144010409 -32963731 + T-rich Low_complexity Low_complexity 2 55 0 49583 73 19 2 chrX 144010409 144013717 -32960423 - LTR46-int LTR ERV1 -3734 3251 1 3018 111 24 2 chrX 144013717 144014167 -32959973 - LTR46 LTR ERV1 0 460 1 543 312 59 35 chrX 144014859 144015061 -32959079 - LTR33 LTR ERVL -306 215 9 288 336 52 15 chrX 144015061 144015195 -32958945 + L3 LINE CR1 1196 1334 -243 2688 129 66 33 chrX 144015307 144015504 -32958636 + MER39B LTR ERV1 3 192 -461 2374 74 0 32 chrX 144015504 144015815 -32958325 + AluY SINE Alu 1 301 -10 2688 129 66 33 chrX 144015815 144016129 -32958011 + MER39B LTR ERV1 192 531 -122 309 320 0 0 chrX 144016451 144016529 -32957611 + L2 LINE L2 3189 3266 -6 200 370 30 10 chrX 144016554 144016654 -32957486 + MIR3 SINE MIR 2 103 -105 3065 140 76 2 chrX 144016936 144017473 -32956667 - L1PA16 LINE L1 -3 6163 5587 1736 166 14 7 chrX 144017541 144017851 -32956289 + AluSx SINE Alu 1 312 0 353 301 224 20 chrX 144017949 144018145 -32955995 - MIR SINE MIR 0 262 27 372 179 0 60 chrX 144018255 144018339 -32955801 + THE1C LTR MaLR 1 79 -296 387 0 0 0 chrX 144019337 144019380 -32954760 + (TG)n Simple_repeat Simple_repeat 2 44 0 3859 137 7 3 chrX 144019661 144020275 -32953865 - L1PA16 LINE L1 -10 6156 5541 799 134 14 21 chrX 144020678 144020820 -32953320 - MER67C LTR ERV1 0 710 570 4725 220 124 11 chrX 144020820 144021949 -32952191 + L1PA15 LINE L1 112 1368 -6197 1167 259 3 31 chrX 144022028 144022348 -32951792 + LOR1-int LTR ERV1 6851 7161 -959 * 8336 206 18 45 chrX 144022337 144023108 -32951032 - MER66-int LTR ERV1 -2263 4413 3623 2068 125 0 0 chrX 144023108 144023410 -32950730 + AluSg SINE Alu 1 302 0 8336 206 18 45 chrX 144023410 144024550 -32949590 - MER66-int LTR ERV1 -3053 3623 2552 195 362 0 0 chrX 144024648 144024706 -32949434 - MIR SINE MIR 0 262 205 16499 207 27 22 chrX 144024720 144030473 -32943667 + L1PA15 LINE L1 1796 7577 -7 430 307 8 0 chrX 144030543 144030670 -32943470 + L2 LINE L2 3180 3307 -6 861 113 42 7 chrX 144030923 144031065 -32943075 - L1PA11 LINE L1 -2 6172 6026 221 302 115 0 chrX 144031704 144031800 -32942340 - MIR SINE MIR 0 262 156 252 244 158 0 chrX 144032061 144032143 -32941997 + MLT1J LTR MaLR 271 365 -146 2292 104 6 6 chrX 144032244 144032572 -32941568 - THE1B LTR MaLR -36 328 1 855 331 22 11 chrX 144033018 144033477 -32940663 - L1ME LINE L1 -427 5743 5280 240 86 0 0 chrX 144033477 144033512 -32940628 + (TATATG)n Simple_repeat Simple_repeat 5 39 0 999 103 0 0 chrX 144033534 144033680 -32940460 + (TA)n Simple_repeat Simple_repeat 1 146 0 27 0 0 0 chrX 144033844 144033871 -32940269 + AT_rich Low_complexity Low_complexity 1 27 0 2482 247 65 15 chrX 144034048 144034164 -32939976 - L1MCc LINE L1 -2991 3950 3841 2317 112 0 0 chrX 144034164 144034469 -32939671 - AluSx SINE Alu -7 305 1 2482 247 65 15 chrX 144034469 144035243 -32938897 - L1MCc LINE L1 -3100 3841 3015 359 198 185 12 chrX 144035270 144035432 -32938708 - L1MCc LINE L1 -3963 2978 2789 1595 236 72 70 chrX 144035522 144036246 -32937894 + MER50 LTR ERV1 10 734 0 1802 231 123 58 chrX 144036255 144037187 -32936953 - L1MCc LINE L1 -4887 1536 759 260 318 114 36 chrX 144037276 144037496 -32936644 - L1MCc LINE L1 -5857 566 330 17593 197 51 22 chrX 144037505 144042109 -32932031 - L1 LINE L1 -2805 4760 17 243 217 43 0 chrX 144042114 144042183 -32931957 - L1M3 LINE L1 -541 5642 5571 21 57 0 0 chrX 144042183 144042218 -32931922 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chrX 144042566 144042610 -32931530 + AT_rich Low_complexity Low_complexity 1 44 0 2423 63 13 0 chrX 144042615 144042914 -32931226 - AluY SINE Alu -8 303 1 33 73 0 0 chrX 144043208 144043276 -32930864 + AT_rich Low_complexity Low_complexity 1 68 0 2127 125 47 33 chrX 144043312 144043671 -32930469 + THE1B LTR MaLR 1 364 0 320 273 45 71 chrX 144044689 144044887 -32929253 - L2 LINE L2 -3 3310 3118 1550 201 33 4 chrX 144045018 144045316 -32928824 + AluJo SINE Alu 1 306 0 1048 279 121 29 chrX 144045485 144045933 -32928207 - L2 LINE L2 -831 2483 1995 333 152 57 86 chrX 144045936 144046041 -32928099 - L1 LINE L1 -1808 5757 5656 * 3214 251 66 4 chrX 144046010 144047094 -32927046 - L1 LINE L1 -2882 4683 3526 411 176 246 63 chrX 144047100 144047242 -32926898 - FRAM SINE Alu 0 166 1 2626 258 42 35 chrX 144047269 144048368 -32925772 - L1 LINE L1 -4296 3269 2164 2182 266 55 81 chrX 144048371 144049472 -32924668 - L1 LINE L1 -5947 1542 470 1225 99 50 0 chrX 144050329 144050511 -32923629 + L1PA13 LINE L1 5972 6162 -1 1878 178 112 10 chrX 144051036 144051419 -32922721 - MSTA LTR MaLR -6 422 1 26 64 0 0 chrX 144051730 144051777 -32922363 + AT_rich Low_complexity Low_complexity 1 47 0 794 246 39 20 chrX 144052013 144052216 -32921924 - MIR SINE MIR -48 214 8 551 319 79 17 chrX 144052239 144052480 -32921660 - MIR SINE MIR -3 259 4 2302 104 3 0 chrX 144053377 144053684 -32920456 - AluSx SINE Alu -3 309 2 206 271 0 0 chrX 144053705 144053753 -32920387 + MIR SINE MIR 143 190 -72 29 70 0 0 chrX 144054172 144054229 -32919911 + AT_rich Low_complexity Low_complexity 1 57 0 337 337 0 59 chrX 144054328 144054389 -32919751 - MIR SINE MIR -56 206 143 2243 125 0 0 chrX 144054389 144054702 -32919438 + AluSq SINE Alu 1 313 0 337 337 0 59 chrX 144054702 144054809 -32919331 - MIR SINE MIR -119 143 48 549 275 4 96 chrX 144054812 144055092 -32919048 + L1ME1 LINE L1 39 292 -6104 1262 234 61 61 chrX 144055092 144055486 -32918654 - MSTD LTR MaLR 0 396 3 3303 234 65 25 chrX 144055488 144056292 -32917848 - MSTD-int LTR MaLR 0 1735 900 1388 269 76 44 chrX 144056295 144056886 -32917254 + L1ME1 LINE L1 288 897 -5499 1756 235 81 11 chrX 144056925 144057495 -32916645 + L1ME1 LINE L1 4690 5299 -916 477 153 10 0 chrX 144057501 144057599 -32916541 + L1MA2 LINE L1 5943 6041 -263 1022 199 0 0 chrX 144057599 144057790 -32916350 - MER50 LTR ERV1 0 734 544 1290 139 17 38 chrX 144057833 144057885 -32916255 - MER50 LTR ERV1 -501 233 181 441 0 0 0 chrX 144057885 144057934 -32916206 + (TG)n Simple_repeat Simple_repeat 1 49 0 1290 139 17 38 chrX 144057934 144058119 -32916021 - MER50 LTR ERV1 -553 181 1 1759 73 27 0 chrX 144058120 144058379 -32915761 + L1MA2 LINE L1 6039 6304 0 1871 218 79 11 chrX 144058379 144058933 -32915207 + L1ME1 LINE L1 5396 6011 -224 11129 252 47 13 chrX 144058944 144059539 -32914601 - L1P4 LINE L1 -574 7030 6457 2097 139 37 6 chrX 144059539 144059892 -32914248 - THE1B LTR MaLR 0 364 1 11129 252 47 13 chrX 144059892 144059907 -32914233 - L1P4 LINE L1 -1147 6457 6444 2420 146 3 3 chrX 144059907 144060271 -32913869 + THE1B LTR MaLR 1 364 0 11129 252 47 13 chrX 144060271 144064070 -32910070 - L1P4 LINE L1 -1160 6444 2454 229 254 0 0 chrX 144064071 144064126 -32910014 - L1P4 LINE L1 -5210 2364 2310 2230 214 73 69 chrX 144064236 144064978 -32909162 - LTR1B LTR ERV1 -81 745 1 721 282 10 5 chrX 144064978 144065187 -32908953 - L1P4 LINE L1 -5190 2391 2182 426 374 33 0 chrX 144065423 144065605 -32908535 - L1P4 LINE L1 -5401 2180 1993 276 302 79 16 chrX 144065587 144065776 -32908364 - L1MEc LINE L1 -4202 2194 1994 * 27 49 0 0 chrX 144066428 144066469 -32907671 + AT_rich Low_complexity Low_complexity 1 41 0 272 277 0 15 chrX 144066536 144066601 -32907539 - MIR SINE MIR -196 66 3 2029 159 83 15 chrX 144066606 144067003 -32907137 - MSTA LTR MaLR -4 424 1 810 170 0 25 chrX 144067005 144067164 -32906976 - MSTA-int LTR MaLR -2 1578 1424 2342 137 25 0 chrX 144067170 144067536 -32906604 - THE1C LTR MaLR 0 375 1 10149 122 29 11 chrX 144067536 144069057 -32905083 - THE1C-int LTR MaLR 0 1580 32 458 161 0 12 chrX 144069050 144069131 -32905009 - THE1C-int LTR MaLR -1500 80 1 * 1526 158 19 14 chrX 144069131 144069400 -32904740 - THE1C LTR MaLR 0 375 121 7220 190 24 8 chrX 144069409 144070758 -32903382 - MSTA-int LTR MaLR -277 1370 1 203 176 0 0 chrX 144070787 144070821 -32903319 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 1676 177 10 10 chrX 144070832 144071142 -32902998 - MSTA LTR MaLR -118 310 1 322 213 43 21 chrX 144071781 144071875 -32902265 + L3 LINE CR1 912 1007 -570 360 281 24 24 chrX 144071912 144071997 -32902143 - L1MA10 LINE L1 0 6334 6250 1541 282 37 22 chrX 144071997 144072639 -32901501 - L1ME1 LINE L1 -76 6090 5439 591 233 0 0 chrX 144074130 144074280 -32899860 + L1 LINE L1 3734 3883 -2263 956 236 21 21 chrX 144074532 144074812 -32899328 + L1MB8 LINE L1 5887 6166 -12 269 182 0 15 chrX 144074831 144074897 -32899243 + GA-rich Low_complexity Low_complexity 5 69 0 817 191 0 7 chrX 144075567 144075719 -32898421 - AluJb SINE Alu -106 206 56 388 318 71 35 chrX 144075843 144076211 -32897929 + L1ME LINE L1 5412 5792 -329 1101 98 0 0 chrX 144077016 144077169 -32896971 + L1PA7 LINE L1 5997 6149 -5 3125 213 45 7 chrX 144077177 144078044 -32896096 + L1 LINE L1 2908 3807 -2339 2193 87 3 26 chrX 144078053 144078362 -32895778 - AluSq SINE Alu -11 302 1 678 300 41 8 chrX 144078673 144078940 -32895200 - LTR16A1 LTR ERVL 0 457 182 1686 210 38 44 chrX 144078940 144079521 -32894619 - L1ME LINE L1 -378 5788 5223 376 319 35 18 chrX 144079562 144079791 -32894349 - L1ME LINE L1 -4461 1800 1568 360 0 0 0 chrX 144079810 144079850 -32894290 + (TTA)n Simple_repeat Simple_repeat 3 42 0 11428 50 4 0 chrX 144079850 144082033 -32892107 - L1PA5 LINE L1 -18 6136 3948 1653 56 0 0 chrX 144082033 144082248 -32891892 + L1PA5 LINE L1 3737 3951 -2195 1321 276 77 36 chrX 144082246 144083691 -32890449 - L1ME LINE L1 -4571 1509 21 * 926 42 0 8 chrX 144083753 144083871 -32890269 - L1PA5 LINE L1 -4 6150 6034 1840 50 58 0 chrX 144083871 144084111 -32890029 + L1P1 LINE L1 5463 5716 -439 189 0 0 0 chrX 144084302 144084323 -32889817 + (CA)n Simple_repeat Simple_repeat 2 22 0 264 30 0 0 chrX 144084378 144084411 -32889729 + (TG)n Simple_repeat Simple_repeat 2 34 0 339 274 233 35 chrX 144084576 144084893 -32889247 + MLT1H LTR MaLR 109 488 -61 4841 38 3 0 chrX 144084898 144085477 -32888663 - LTR10C LTR ERV1 0 591 11 393 368 55 30 chrX 144085998 144086365 -32887775 + L2 LINE L2 545 920 -2394 525 283 91 29 chrX 144087617 144087926 -32886214 + LTR33 LTR ERVL 15 378 -143 2212 109 7 0 chrX 144087997 144088299 -32885841 + AluSg SINE Alu 1 304 -6 281 293 28 19 chrX 144088310 144088416 -32885724 - MLT1F1 LTR MaLR -24 569 434 625 286 55 44 chrX 144088473 144088655 -32885485 - MLT1F1 LTR MaLR -278 289 106 645 279 76 49 chrX 144088657 144089248 -32884892 - L1MEc LINE L1 -4794 1602 996 346 147 85 0 chrX 144089283 144089412 -32884728 + (TA)n Simple_repeat Simple_repeat 2 141 0 264 248 95 44 chrX 144089646 144089783 -32884357 - MLT1-int LTR MaLR -536 835 692 378 0 0 0 chrX 144090610 144090652 -32883488 + (CA)n Simple_repeat Simple_repeat 2 43 0 528 100 0 0 chrX 144090652 144090732 -32883408 + (TA)n Simple_repeat Simple_repeat 2 81 0 2287 200 16 24 chrX 144090734 144091233 -32882907 - L1MA10 LINE L1 -67 6267 5773 1651 241 26 2 chrX 144091236 144091730 -32882410 - L1 LINE L1 -3015 4091 3586 1043 304 87 41 chrX 144091763 144092280 -32881860 - L1 LINE L1 -6489 541 1 847 317 58 59 chrX 144092402 144092501 -32881639 - L2 LINE L2 -129 3184 3086 2076 128 0 0 chrX 144092501 144092813 -32881327 - AluSx SINE Alu 0 312 1 847 317 58 59 chrX 144092813 144093310 -32880830 - L2 LINE L2 -227 3086 2573 282 245 10 59 chrX 144093450 144093552 -32880588 - LTR33 LTR ERVL -7 514 418 2224 122 0 6 chrX 144093627 144093939 -32880201 + AluSg SINE Alu 1 310 0 251 128 43 0 chrX 144093962 144094009 -32880131 - LTR33 LTR ERVL -468 53 5 389 320 52 13 chrX 144094388 144094541 -32879599 - LTR16C LTR ERVL -1 490 332 37 69 0 0 chrX 144095183 144095255 -32878885 + AT_rich Low_complexity Low_complexity 1 72 0 571 153 0 10 chrX 144095666 144095764 -32878376 + MER4A LTR ERV1 2 98 -566 1568 139 171 79 chrX 144095764 144096132 -32878008 + MER4A LTR ERV1 263 664 0 24 0 0 0 chrX 144097062 144097086 -32877054 + AT_rich Low_complexity Low_complexity 1 24 0 268 298 0 0 chrX 144097191 144097285 -32876855 + L1MCc LINE L1 1359 1452 -4971 238 246 43 113 chrX 144097449 144097705 -32876435 + L1MCc LINE L1 313 550 -6289 2455 103 40 0 chrX 144097748 144098098 -32876042 - THE1B LTR MaLR 0 364 1 19405 162 25 18 chrX 144098129 144099815 -32874325 + L1M1 LINE L1 18 1690 -5875 315 0 0 0 chrX 144099815 144099850 -32874290 + (GA)n Simple_repeat Simple_repeat 2 36 0 19405 162 25 18 chrX 144099850 144101318 -32872822 + L1M1 LINE L1 1690 3202 -4363 707 34 0 0 chrX 144101318 144101428 -32872712 + L1PA3 LINE L1 6064 6155 0 19405 162 25 18 chrX 144101428 144101670 -32872470 + L1M1 LINE L1 3202 3441 -4124 2205 148 75 8 chrX 144101670 144102070 -32872070 - MSTA LTR MaLR -1 427 1 5971 197 68 12 chrX 144102070 144103299 -32870841 - MSTA-int LTR MaLR 0 1651 354 2431 119 34 3 chrX 144103342 144103730 -32870410 + L1PA13 LINE L1 5764 6163 0 1327 144 21 0 chrX 144103730 144103966 -32870174 + L1MA2 LINE L1 6057 6304 0 207 277 246 15 chrX 144104081 144104211 -32869929 - MIR SINE MIR -55 207 48 230 350 45 48 chrX 144105085 144105482 -32868658 + L1MCc LINE L1 782 1177 -5945 1047 294 79 41 chrX 144105753 144106818 -32867322 + L1MCc LINE L1 1434 2538 -4584 536 100 0 0 chrX 144106845 144106935 -32867205 - Charlie5 DNA MER1_type -124 2488 2399 799 303 60 44 chrX 144106975 144107540 -32866600 + L1ME2 LINE L1 24 597 -5826 272 286 127 8 chrX 144107598 144107724 -32866416 + L1ME2 LINE L1 760 900 -5523 1965 236 99 32 chrX 144107729 144109186 -32864954 + L1ME2 LINE L1 5311 6940 -19 262 273 0 30 chrX 144109197 144109296 -32864844 + L1MC/D LINE L1 2258 2353 -4588 699 264 96 23 chrX 144109317 144109756 -32864384 + L1MC/D LINE L1 2500 2970 -4152 438 231 33 8 chrX 144109757 144109878 -32864262 - LTR41 LTR ERVL -637 136 13 534 260 0 28 chrX 144109898 144110075 -32864065 + L1M4 LINE L1 4009 4180 -1966 228 35 0 0 chrX 144110094 144110123 -32864017 + (CA)n Simple_repeat Simple_repeat 2 30 0 1627 243 7 60 chrX 144110164 144110325 -32863815 + L1M4 LINE L1 4627 4795 -1351 4054 182 49 33 chrX 144110325 144111176 -32862964 - MER6 DNA MER2_type 0 865 1 1627 243 7 60 chrX 144111176 144111627 -32862513 + L1M4 LINE L1 4795 5206 -940 1626 283 57 25 chrX 144111613 144111846 -32862294 + L1MC/D LINE L1 5272 5496 -1643 * 5752 102 19 34 chrX 144111846 144112549 -32861591 + L1PA11 LINE L1 4775 5487 -687 2819 13 0 0 chrX 144112549 144112857 -32861283 + AluYb8 SINE Alu 1 308 -10 5752 102 19 34 chrX 144112857 144113168 -32860972 + L1PA11 LINE L1 5487 5801 -373 2281 110 0 3 chrX 144113168 144113478 -32860662 + AluSq SINE Alu 3 311 -2 5752 102 19 34 chrX 144113478 144113875 -32860265 + L1PA11 LINE L1 5801 6174 0 1626 283 57 25 chrX 144113875 144114289 -32859851 + L1MC/D LINE L1 5496 6396 -743 1625 234 28 83 chrX 144114290 144114527 -32859613 + L1MB8 LINE L1 3877 4125 -2021 2480 57 0 0 chrX 144114527 144114827 -32859313 - AluY SINE Alu -11 300 1 1625 234 28 83 chrX 144114827 144115363 -32858777 + L1MB8 LINE L1 4125 4608 -1538 5003 96 3 0 chrX 144115376 144116064 -32858076 - L1PA12 LINE L1 0 6168 5479 190 56 56 0 chrX 144116064 144116100 -32858040 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 8454 25 0 0 chrX 144116100 144117854 -32856286 - L1PA3 LINE L1 -13 6142 4389 1564 143 27 15 chrX 144117854 144117950 -32856190 - L1PA12 LINE L1 -689 5472 5379 1362 25 0 0 chrX 144117950 144118111 -32856029 + L1PA3 LINE L1 5994 6154 -1 1564 143 27 15 chrX 144118111 144118417 -32855723 - L1PA12 LINE L1 -782 5379 5065 * 2689 220 95 19 chrX 144118411 144119568 -32854572 + L1MB8 LINE L1 4808 6175 -3 1482 132 89 0 chrX 144120028 144120170 -32853970 + L1MA9 LINE L1 5999 6127 -185 360 0 0 0 chrX 144120170 144120210 -32853930 + (CA)n Simple_repeat Simple_repeat 1 40 0 1482 132 89 0 chrX 144120210 144120347 -32853793 + L1MA9 LINE L1 6127 6303 -9 22 35 0 0 chrX 144120413 144120442 -32853698 + AT_rich Low_complexity Low_complexity 1 29 0 2298 73 0 10 chrX 144121599 144121887 -32852253 - AluY SINE Alu -26 285 1 6204 64 8 0 chrX 144121895 144122688 -32851452 - L1PA7 LINE L1 -4 6150 5352 2308 87 3 3 chrX 144122716 144123014 -32851126 - AluSc SINE Alu -11 298 1 233 331 194 16 chrX 144123115 144123239 -32850901 + L2 LINE L2 3127 3272 0 2386 68 0 0 chrX 144123417 144123712 -32850428 - AluY SINE Alu -16 295 1 370 148 0 86 chrX 144124509 144124552 -32849588 - MIR SINE MIR -111 151 117 1969 204 0 5 chrX 144124552 144124919 -32849221 - MLT1A1 LTR MaLR 0 365 1 370 148 0 86 chrX 144124919 144124956 -32849184 - MIR SINE MIR -145 117 78 2325 88 3 0 chrX 144125317 144125613 -32848527 - AluSq SINE Alu -14 299 3 2308 103 0 3 chrX 144126465 144126776 -32847364 - AluSx SINE Alu -1 311 2 2312 88 7 0 chrX 144127838 144128133 -32846007 - AluSc SINE Alu -12 297 1 287 206 41 14 chrX 144128306 144128379 -32845761 + MIR SINE MIR 64 138 -70 248 268 47 47 chrX 144128415 144128542 -32845598 + MIR SINE MIR 118 244 -18 317 203 0 0 chrX 144128823 144128882 -32845258 - MIR SINE MIR -26 236 178 203 257 86 76 chrX 144129180 144129285 -32844855 + MIR SINE MIR 39 144 -64 22 0 0 0 chrX 144129480 144129502 -32844638 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 144130322 144130344 -32843796 + AT_rich Low_complexity Low_complexity 1 22 0 865 201 24 12 chrX 144130424 144130552 -32843588 + MER21B LTR ERV1 329 461 -402 757 201 54 13 chrX 144130552 144130701 -32843439 - FRAM SINE Alu -11 155 1 865 201 24 12 chrX 144130701 144130736 -32843404 + MER21B LTR ERV1 461 494 -369 24 0 0 0 chrX 144130736 144130760 -32843380 + AT_rich Low_complexity Low_complexity 1 24 0 254 178 56 11 chrX 144130849 144130939 -32843201 + (TTA)n Simple_repeat Simple_repeat 2 95 0 2229 136 0 0 chrX 144130979 144131289 -32842851 - AluSx SINE Alu 0 312 3 332 309 11 0 chrX 144131559 144131653 -32842487 - MARNA DNA Mariner -374 212 118 21 36 0 0 chrX 144131693 144131721 -32842419 + AT_rich Low_complexity Low_complexity 1 28 0 1141 203 4 50 chrX 144132778 144133019 -32841121 + MIR SINE MIR 24 253 -9 229 292 14 0 chrX 144133166 144133238 -32840902 + MIR3 SINE MIR 136 208 0 218 290 167 7 chrX 144133849 144133987 -32840153 + MIR SINE MIR 71 230 -32 2387 56 3 0 chrX 144134637 144134923 -32839217 + AluSp SINE Alu 1 287 -26 274 327 85 20 chrX 144134955 144135108 -32839032 + L2 LINE L2 2596 2758 -556 332 345 157 23 chrX 144135374 144135896 -32838244 - L2 LINE L2 -995 2319 1728 237 132 0 0 chrX 144136009 144136047 -32838093 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 1803 184 28 17 chrX 144136454 144136813 -32837327 + MLT1A1 LTR MaLR 3 365 0 234 367 136 33 chrX 144136834 144137110 -32837030 - L2 LINE L2 -2259 1055 732 1444 173 29 48 chrX 144137110 144137423 -32836717 + AluJb SINE Alu 1 307 -5 234 367 136 33 chrX 144137423 144137506 -32836634 - L2 LINE L2 -2582 732 659 256 341 194 9 chrX 144137720 144137937 -32836203 + MIR SINE MIR 6 262 0 2096 137 24 0 chrX 144138285 144138621 -32835519 - L1PA15 LINE L1 -7 6158 5815 21 82 0 0 chrX 144138630 144138679 -32835461 + AT_rich Low_complexity Low_complexity 1 49 0 2241 132 19 16 chrX 144138888 144139260 -32834880 + THE1C LTR MaLR 3 375 0 228 208 39 39 chrX 144139700 144139777 -32834363 + L1ME LINE L1 5816 5892 -229 365 291 52 0 chrX 144141424 144141558 -32832582 + MIR SINE MIR 80 220 -42 697 122 0 38 chrX 144141803 144141896 -32832244 + L1MA4A LINE L1 6162 6250 -53 2182 141 30 25 chrX 144141896 144142258 -32831882 + THE1B LTR MaLR 1 364 0 697 122 0 38 chrX 144142258 144142295 -32831845 + L1MA4A LINE L1 6250 6287 -16 26 50 0 0 chrX 144142302 144142342 -32831798 + AT_rich Low_complexity Low_complexity 1 40 0 252 0 0 0 chrX 144142708 144142736 -32831404 + (TG)n Simple_repeat Simple_repeat 2 29 0 1795 245 64 31 chrX 144143412 144144020 -32830120 - L1MC4 LINE L1 -1 8041 7414 1737 32 0 23 chrX 144144021 144144238 -32829902 + L1PA7 LINE L1 5941 6152 -2 198 0 0 0 chrX 144144434 144144456 -32829684 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 1330 211 100 4 chrX 144144486 144145033 -32829107 - L1MC4 LINE L1 -630 7412 6756 235 206 31 93 chrX 144145151 144145248 -32828892 - L1MC4a LINE L1 -1366 6442 6352 * 2423 253 65 26 chrX 144145236 144146683 -32827457 - L1ME2 LINE L1 -20 6078 4573 13688 211 23 46 chrX 144146729 144153910 -32820230 - L1MA3 LINE L1 0 7008 10 924 272 61 97 chrX 144154010 144154386 -32819754 - L1ME2 LINE L1 -4876 1385 997 2009 112 0 0 chrX 144154386 144154654 -32819486 - AluSq SINE Alu -45 268 1 924 272 61 97 chrX 144154654 144155658 -32818482 - L1ME2 LINE L1 -5264 997 5 206 319 29 0 chrX 144155805 144155874 -32818266 + L2 LINE L2 3228 3298 -15 375 278 92 77 chrX 144155941 144156268 -32817872 + MLT1I LTR MaLR 63 394 -15 558 227 8 17 chrX 144156330 144156449 -32817691 + L2 LINE L2 3192 3309 -4 4027 258 61 45 chrX 144156717 144159177 -32814963 + L1M3d LINE L1 2 2233 -3737 2244 100 0 0 chrX 144159177 144159477 -32814663 + AluY SINE Alu 1 300 -11 4027 258 61 45 chrX 144159477 144160906 -32813234 + L1M3d LINE L1 2233 3638 -2332 418 290 101 18 chrX 144161190 144161407 -32812733 + MIR SINE MIR 1 235 -27 419 288 44 0 chrX 144161829 144161986 -32812154 - MIR SINE MIR -62 146 16 2182 111 0 0 chrX 144162003 144162300 -32811840 - AluSc SINE Alu -6 303 7 231 274 42 21 chrX 144162369 144162464 -32811676 + L3 LINE CR1 879 975 -602 919 335 81 13 chrX 144162501 144162970 -32811170 + L3 LINE CR1 1072 1572 -5 258 277 125 18 chrX 144163037 144163149 -32810991 - MLT1I LTR MaLR -6 403 280 1314 244 54 109 chrX 144163166 144163819 -32810321 - MER21B LTR ERV1 -149 714 98 286 297 7 48 chrX 144163787 144163932 -32810208 - MER77 LTR ERV1 -403 202 64 * 753 307 11 19 chrX 144163950 144164220 -32809920 - MLT1I LTR MaLR -141 268 1 7015 107 14 7 chrX 144165313 144166830 -32807310 + SVA Other Other 14 1385 -1 687 153 73 0 chrX 144166933 144167057 -32807083 - FLAM_C SINE Alu 0 133 1 425 279 39 39 chrX 144167112 144167341 -32806799 + L1ME LINE L1 5427 5655 -515 844 106 0 57 chrX 144167427 144167568 -32806572 + FLAM_C SINE Alu 1 133 0 300 91 0 0 chrX 144167602 144167646 -32806494 + (A)n Simple_repeat Simple_repeat 1 44 0 218 348 94 49 chrX 144167662 144167906 -32806234 + L2 LINE L2 3015 3269 -3 2332 84 0 10 chrX 144168055 144168365 -32805775 + AluY SINE Alu 5 311 0 218 323 65 16 chrX 144168539 144168663 -32805477 - MIR SINE MIR -52 210 81 3182 204 102 22 chrX 144168714 144169517 -32804623 - MER63C DNA MER1_type -139 921 45 270 0 0 0 chrX 144169517 144169547 -32804593 + (CA)n Simple_repeat Simple_repeat 2 31 0 3182 204 102 22 chrX 144169547 144169593 -32804547 - MER63C DNA MER1_type -1015 45 4 395 369 154 30 chrX 144169620 144170388 -32803752 + L2 LINE L2 1869 2731 -583 22 0 0 0 chrX 144170569 144170591 -32803549 + AT_rich Low_complexity Low_complexity 1 22 0 240 183 14 0 chrX 144170720 144170791 -32803349 + L1M4 LINE L1 2904 2975 -3171 584 258 70 24 chrX 144170817 144171050 -32803090 + L1M4 LINE L1 2948 3203 -2943 2214 125 0 3 chrX 144171050 144171363 -32802777 + AluSx SINE Alu 1 312 0 584 258 70 24 chrX 144171363 144171470 -32802670 + L1M4 LINE L1 3203 3304 -2842 573 236 12 24 chrX 144171507 144171672 -32802468 + MER3 DNA MER1_type 17 179 -30 1438 274 58 26 chrX 144171786 144171989 -32802151 + L1M4 LINE L1 4581 4776 -1370 2383 83 0 0 chrX 144171989 144172279 -32801861 + AluSg1 SINE Alu 2 291 -18 1438 274 58 26 chrX 144172279 144172727 -32801413 + L1M4 LINE L1 4776 5253 -893 30 59 0 0 chrX 144172733 144172784 -32801356 + AT_rich Low_complexity Low_complexity 1 51 0 245 267 198 0 chrX 144173616 144173717 -32800423 + L2 LINE L2 3191 3311 -2 212 369 0 0 chrX 144173819 144173903 -32800237 + MIR SINE MIR 53 136 -72 342 304 87 22 chrX 144174507 144174645 -32799495 - MIR SINE MIR -96 166 20 231 88 0 0 chrX 144176751 144176785 -32797355 + (CA)n Simple_repeat Simple_repeat 2 35 0 1678 173 45 10 chrX 144176838 144177150 -32796990 - THE1C LTR MaLR 0 375 53 818 229 11 0 chrX 144177145 144177324 -32796816 + MER82 DNA MER2_type 27 207 -446 * 280 119 0 0 chrX 144177712 144177754 -32796386 - MLT2A1 LTR ERVL -351 93 52 570 306 113 0 chrX 144177756 144177785 -32796355 + MER82 DNA MER2_type 392 416 -237 182 36 0 36 chrX 144177785 144177813 -32796327 + (CA)n Simple_repeat Simple_repeat 1 27 0 570 306 113 0 chrX 144177813 144178012 -32796128 + MER82 DNA MER2_type 416 646 -7 5079 170 7 12 chrX 144178159 144178703 -32795437 - L1PB3 LINE L1 -2 6152 5607 3115 78 57 2 chrX 144178703 144179124 -32795016 + MLT2A1 LTR ERVL 1 444 0 5079 170 7 12 chrX 144179124 144180061 -32794079 - L1PB3 LINE L1 -547 5607 4678 2103 273 61 61 chrX 144180074 144181211 -32792929 - L1PBa LINE L1 -5611 1252 116 255 254 0 0 chrX 144181212 144181275 -32792865 - L1PBa LINE L1 -6798 65 3 208 148 74 0 chrX 144181343 144181397 -32792743 + (CATAT)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chrX 144182198 144182221 -32791919 + AT_rich Low_complexity Low_complexity 1 23 0 701 299 98 30 chrX 144182582 144182920 -32791220 + LTR16B LTR ERVL 96 456 -8 466 311 116 24 chrX 144182927 144183255 -32790885 + L1ME4a LINE L1 5621 5978 -143 2099 124 63 17 chrX 144183851 144184199 -32789941 - THE1B LTR MaLR 0 364 1 1486 192 25 28 chrX 144185000 144185286 -32788854 - AluJb SINE Alu -22 290 6 843 312 103 22 chrX 144185586 144186265 -32787875 - L2 LINE L2 -42 3271 2543 273 57 0 0 chrX 144186572 144186607 -32787533 + (TAA)n Simple_repeat Simple_repeat 3 37 0 2200 111 10 0 chrX 144189541 144189847 -32784293 + AluSg SINE Alu 2 310 0 22 56 0 0 chrX 144189998 144190034 -32784106 + AT_rich Low_complexity Low_complexity 1 36 0 1310 188 0 4 chrX 144190163 144190397 -32783743 + MLT1D LTR MaLR 3 235 -270 214 105 53 0 chrX 144190411 144190449 -32783691 + GA-rich Low_complexity Low_complexity 1 40 0 1024 206 124 5 chrX 144190452 144190693 -32783447 + MLT1D LTR MaLR 206 468 -37 480 262 40 27 chrX 144191556 144191705 -32782435 + L3 LINE CR1 1425 1575 -2 2249 140 22 0 chrX 144191862 144192218 -32781922 - THE1B LTR MaLR 0 364 1 9678 109 40 47 chrX 144192218 144193809 -32780331 - THE1B-int LTR MaLR 0 1580 1 2155 166 22 0 chrX 144193809 144194165 -32779975 - THE1B LTR MaLR 0 364 1 2365 80 0 3 chrX 144195295 144195595 -32778545 - AluY SINE Alu -12 299 1 1983 161 0 0 chrX 144195600 144195892 -32778248 - AluSx SINE Alu -20 292 1 186 43 0 0 chrX 144196183 144196206 -32777934 + (GA)n Simple_repeat Simple_repeat 1 23 0 341 327 9 19 chrX 144196253 144196360 -32777780 - MIR SINE MIR -79 129 24 242 199 176 30 chrX 144196405 144196536 -32777604 - L1ME1 LINE L1 -8 6158 6009 195 69 0 0 chrX 144196745 144196774 -32777366 + (CAAA)n Simple_repeat Simple_repeat 3 31 0 752 215 53 5 chrX 144197618 144197827 -32776313 - MER33 DNA MER1_type -100 224 6 2642 175 102 10 chrX 144198067 144198645 -32775495 - L1MB1 LINE L1 0 6168 5538 1472 199 32 51 chrX 144198865 144198916 -32775224 + MLT1A1 LTR MaLR 1 51 -314 2137 107 3 35 chrX 144198916 144199226 -32774914 + AluSx SINE Alu 1 300 -12 1472 199 32 51 chrX 144199226 144199546 -32774594 + MLT1A1 LTR MaLR 51 365 0 801 283 40 0 chrX 144199592 144199889 -32774251 + L1ME2 LINE L1 5856 6164 0 1541 237 33 20 chrX 144200087 144200484 -32773656 + LTR52 LTR ERVL 13 414 -7 263 128 0 0 chrX 144200715 144200754 -32773386 - MLT1G LTR MaLR -197 393 355 1995 137 3 3 chrX 144200776 144201076 -32773064 + AluSx SINE Alu 1 300 -12 330 26 0 0 chrX 144201271 144201310 -32772830 + (CA)n Simple_repeat Simple_repeat 2 40 0 723 325 53 4 chrX 144202713 144202978 -32771162 - LTR33 LTR ERVL -2 519 242 613 240 63 27 chrX 144203972 144204305 -32769835 - L1M4 LINE L1 -3049 3097 2753 240 246 35 97 chrX 144204324 144204438 -32769702 + MLT1G3 LTR MaLR 20 126 -416 341 203 108 14 chrX 144204473 144204544 -32769596 + MLT1G3 LTR MaLR 149 226 -304 339 220 122 4 chrX 144204544 144204635 -32769505 - MLT1G1 LTR MaLR 0 530 461 577 319 0 6 chrX 144204701 144204861 -32769279 - MLT1G1 LTR MaLR -207 388 230 400 335 53 18 chrX 144205125 144205295 -32768845 + L1MEd LINE L1 926 1101 -5018 373 310 30 55 chrX 144205495 144205766 -32768374 + HAL1 LINE L1 1457 1720 -787 25 0 0 0 chrX 144205896 144205921 -32768219 + AT_rich Low_complexity Low_complexity 1 25 0 368 324 97 18 chrX 144206088 144206582 -32767558 + L1MEd LINE L1 2114 2646 -3483 383 249 53 63 chrX 144206638 144206827 -32767313 + L1MEd LINE L1 2624 2810 -3319 2204 72 0 28 chrX 144206827 144207162 -32766978 + AluY SINE Alu 1 327 0 723 286 115 41 chrX 144207248 144207885 -32766255 + L1MEd LINE L1 3064 3747 -2382 234 130 0 56 chrX 144207999 144208053 -32766087 + L1MCa LINE L1 2005 2055 -4371 313 333 46 0 chrX 144208156 144208264 -32765876 + L2 LINE L2 3197 3309 -4 361 223 76 43 chrX 144208442 144208626 -32765514 - L1MEd LINE L1 -5235 884 695 2356 98 0 0 chrX 144208631 144208937 -32765203 - AluY SINE Alu -5 306 1 1252 197 117 18 chrX 144208950 144209335 -32764805 - L1MA10 LINE L1 -1 6333 5911 198 0 0 0 chrX 144209335 144209357 -32764783 + (TA)n Simple_repeat Simple_repeat 2 23 0 322 294 0 11 chrX 144209357 144209449 -32764691 - L1MC4 LINE L1 -1339 6703 6613 5043 209 49 7 chrX 144209459 144210705 -32763435 - L1MA10 LINE L1 -831 5315 4018 1606 214 166 7 chrX 144210704 144211270 -32762870 - L1MA10 LINE L1 -2418 3728 3073 * 32 0 0 0 chrX 144211272 144211304 -32762836 + AT_rich Low_complexity Low_complexity 1 32 0 768 303 114 58 chrX 144211367 144212018 -32762122 - L1MEd LINE L1 -5432 687 1 187 175 105 35 chrX 144213294 144213351 -32760789 + L2 LINE L2 2828 2888 -384 4205 117 5 2 chrX 144213419 144214019 -32760121 + MER4D LTR ERV1 271 872 0 1849 196 24 32 chrX 144214286 144214848 -32759292 - MLT2A2 LTR ERVL 0 554 1 2318 59 0 0 chrX 144215181 144215454 -32758686 - AluY SINE Alu -32 279 7 10097 30 0 0 chrX 144215455 144217428 -32756712 + L1PA4 LINE L1 4182 6154 -1 2338 162 15 0 chrX 144217816 144218211 -32755929 - MER57A LTR ERV1 0 403 3 1594 133 24 4 chrX 144218213 144218468 -32755672 - MER57A-int LTR ERV1 0 7537 7278 721 144 24 8 chrX 144218468 144218593 -32755547 - LTR54B LTR ERV1 -367 131 5 8559 121 24 23 chrX 144218594 144219574 -32754566 - MER57A-int LTR ERV1 -390 7147 6164 2327 94 3 0 chrX 144219574 144219872 -32754268 + AluSp SINE Alu 1 299 -14 8559 121 24 23 chrX 144219872 144220279 -32753861 - MER57A-int LTR ERV1 -1373 6164 5759 1662 153 75 16 chrX 144220279 144220600 -32753540 + MER61A LTR ERV1 1 340 -3 2454 164 50 37 chrX 144220603 144221221 -32752919 + MER61A-int LTR ERV1 1 707 -4510 540 73 73 11 chrX 144221251 144221387 -32752753 + MER61A-int LTR ERV1 1320 1510 -3707 1767 96 20 28 chrX 144221388 144221637 -32752503 + AluSc SINE Alu 1 247 -62 221 176 0 20 chrX 144221642 144221693 -32752447 + GA-rich Low_complexity Low_complexity 4 53 0 23778 86 34 24 chrX 144221810 144225495 -32748645 + MER61A-int LTR ERV1 1497 5217 0 1441 172 112 19 chrX 144225495 144225809 -32748331 + MER61A LTR ERV1 1 343 0 6862 142 35 34 chrX 144225809 144227496 -32746644 - MER57A-int LTR ERV1 -1583 4748 3546 405 199 20 40 chrX 144227516 144227667 -32746473 - MER57A-int LTR ERV1 -3051 2072 1925 4572 43 3 3 chrX 144227764 144228350 -32745790 - LTR10C LTR ERV1 -5 586 1 338 129 0 0 chrX 144228356 144228418 -32745722 - MER57A-int LTR ERV1 -3870 2888 2827 380 191 0 11 chrX 144228521 144228610 -32745530 - MER57A-int LTR ERV1 -2890 3441 3354 492 231 0 0 chrX 144228670 144228778 -32745362 - MER57A-int LTR ERV1 -2991 3340 3233 259 250 11 23 chrX 144228859 144228947 -32745193 - MER57A-int LTR ERV1 -3729 1394 1308 256 222 97 0 chrX 144228972 144229044 -32745096 - MER57A-int LTR ERV1 -4651 1947 1869 288 172 0 0 chrX 144229243 144229301 -32744839 - MER34C LTR ERV1 -373 212 155 4557 143 45 6 chrX 144229579 144230371 -32743769 - MER57A-int LTR ERV1 -6714 823 1 2337 152 20 2 chrX 144230371 144230767 -32743373 - MER57A LTR ERV1 0 403 1 352 244 24 12 chrX 144230854 144230936 -32743204 + MIR SINE MIR 68 150 -112 408 354 93 4 chrX 144231051 144231288 -32742852 - L2 LINE L2 -674 2640 2383 464 350 37 16 chrX 144231289 144231535 -32742605 - MIR SINE MIR 0 262 12 404 323 21 21 chrX 144232336 144232522 -32741618 - L2 LINE L2 -954 2360 2175 317 306 12 77 chrX 144232682 144232852 -32741288 + L3 LINE CR1 780 938 -639 701 148 71 3 chrX 144233154 144233320 -32740820 - L1MA4A LINE L1 -198 5953 5780 251 254 0 0 chrX 144233319 144233382 -32740758 + L1PB4 LINE L1 6090 6152 -4 * 1776 149 29 69 chrX 144233801 144233957 -32740183 - MLT1A1 LTR MaLR -4 361 200 2343 105 0 0 chrX 144233957 144234253 -32739887 - AluSx SINE Alu -16 296 1 1776 149 29 69 chrX 144234253 144234471 -32739669 - MLT1A1 LTR MaLR -165 200 2 334 310 26 26 chrX 144234923 144235039 -32739101 - L1MD1 LINE L1 -358 5884 5769 811 259 8 59 chrX 144235064 144235300 -32738840 + L2 LINE L2 1744 1967 -1347 848 285 126 49 chrX 144235310 144235762 -32738378 + L2 LINE L2 2825 3311 -2 180 290 0 87 chrX 144236721 144236790 -32737350 - L3 LINE CR1 -5 1572 1510 * 216 366 49 86 chrX 144236780 144237378 -32736762 - L2 LINE L2 -1 3271 2635 1106 306 81 11 chrX 144237459 144237831 -32736309 - L2 LINE L2 -387 2927 2530 2036 186 88 39 chrX 144237859 144238348 -32735792 + MER44D DNA MER2_type 38 605 0 1084 272 24 130 chrX 144238348 144239200 -32734940 - L2 LINE L2 -790 2524 1764 281 118 20 0 chrX 144239465 144239516 -32734624 + (CA)n Simple_repeat Simple_repeat 2 53 0 183 274 142 18 chrX 144239756 144239869 -32734271 - L2 LINE L2 -1937 1377 1251 2334 156 33 19 chrX 144239869 144240293 -32733847 - MSTB1 LTR MaLR 0 432 3 6251 223 65 16 chrX 144240295 144241705 -32732435 - MSTB1-int LTR MaLR 0 1651 154 1735 158 73 17 chrX 144241705 144242060 -32732080 - THE1C LTR MaLR 0 375 1 6251 223 65 16 chrX 144242060 144242221 -32731919 - MSTB1-int LTR MaLR -1497 154 2 2107 159 23 50 chrX 144242225 144242665 -32731475 - MSTB1 LTR MaLR -1 431 4 838 282 26 26 chrX 144242667 144242894 -32731246 - L2 LINE L2 -2058 1256 1030 187 250 45 0 chrX 144243275 144243319 -32730821 - MIR3 SINE MIR -52 156 111 2022 246 19 64 chrX 144244752 144245373 -32728767 + MLT1E LTR MaLR 1 593 0 27 0 0 0 chrX 144245530 144245557 -32728583 + AT_rich Low_complexity Low_complexity 1 27 0 1332 220 19 77 chrX 144245780 144246194 -32727946 - MLT1B LTR MaLR 0 390 1 183 42 0 0 chrX 144246437 144246461 -32727679 + (TG)n Simple_repeat Simple_repeat 1 24 0 1156 190 27 12 chrX 144246502 144246760 -32727380 + L1PA16 LINE L1 5902 6163 -3 694 232 0 0 chrX 144246950 144247075 -32727065 + AluJ SINE Alu 2 126 -186 595 114 66 7 chrX 144247083 144247514 -32726626 + (TA)n Simple_repeat Simple_repeat 1 456 0 712 77 27 49 chrX 144247626 144247809 -32726331 + (TA)n Simple_repeat Simple_repeat 2 180 0 692 85 67 10 chrX 144247848 144248344 -32725796 + (TA)n Simple_repeat Simple_repeat 1 524 0 316 200 31 0 chrX 144248346 144248411 -32725729 - AluJb SINE Alu -176 126 60 436 160 60 0 chrX 144248411 144248878 -32725262 + (TA)n Simple_repeat Simple_repeat 1 495 0 1066 160 6 22 chrX 144248878 144249059 -32725081 + AluJ SINE Alu 135 312 0 242 343 53 30 chrX 144249203 144249372 -32724768 + MIR SINE MIR 17 189 -73 216 306 94 56 chrX 144249594 144249774 -32724366 + MER5A DNA MER1_type 1 187 -2 2159 134 0 0 chrX 144250100 144250406 -32723734 + AluSx SINE Alu 1 306 -6 3249 209 70 18 chrX 144250994 144251774 -32722366 + L1M1 LINE L1 17 837 -6728 617 217 43 6 chrX 144251774 144251935 -32722205 + L1MDa LINE L1 1963 2129 -4411 331 373 99 26 chrX 144252011 144252464 -32721676 - L2 LINE L2 -2323 991 506 378 243 78 29 chrX 144253745 144253848 -32720292 - MIR SINE MIR -148 114 7 284 272 24 24 chrX 144254311 144254436 -32719704 + MER113 DNA MER1_type? 394 518 -3 182 265 0 59 chrX 144255937 144256005 -32718135 - MIR SINE MIR -25 237 174 * 406 246 128 57 chrX 144255978 144256189 -32717951 + MIR SINE MIR 6 231 -31 667 267 77 49 chrX 144256653 144256900 -32717240 + MIR SINE MIR 8 261 -1 571 283 141 13 chrX 144257018 144257346 -32716794 - L2 LINE L2 -211 3102 2745 336 272 160 54 chrX 144257340 144257634 -32716506 - L2 LINE L2 -2 3311 2987 * 2426 105 0 0 chrX 144257662 144257975 -32716165 + AluSq SINE Alu 1 313 0 2200 101 0 0 chrX 144258791 144259103 -32715037 - AluSg SINE Alu 0 310 1 729 262 11 27 chrX 144259125 144259312 -32714828 + MER5A DNA MER1_type 1 184 -5 598 292 12 6 chrX 144260127 144260288 -32713852 + MIR SINE MIR 2 163 -99 620 102 219 15 chrX 144260288 144260307 -32713833 + MER21A LTR ERV1 1 15 -916 330 26 0 0 chrX 144260307 144260346 -32713794 + (TG)n Simple_repeat Simple_repeat 2 40 0 620 102 219 15 chrX 144260346 144260463 -32713677 + MER21A LTR ERV1 15 165 -766 2951 151 37 28 chrX 144260526 144261070 -32713070 + MER21A LTR ERV1 376 924 -7 2074 127 56 10 chrX 144261396 144261790 -32712350 + L1MA3 LINE L1 5894 6305 0 1973 190 25 15 chrX 144262336 144262742 -32711398 + MSTB LTR MaLR 17 426 0 7335 192 97 5 chrX 144262742 144264255 -32709885 + MSTB-int LTR MaLR 1 1651 0 2147 174 49 7 chrX 144264255 144264664 -32709476 + MSTB LTR MaLR 1 426 0 1978 231 21 41 chrX 144264665 144265230 -32708910 + MER31-int LTR ERV1 454 1008 -3928 1262 224 19 45 chrX 144265230 144265542 -32708598 + AluJo SINE Alu 1 304 -8 1978 231 21 41 chrX 144265542 144265586 -32708554 + MER31-int LTR ERV1 1008 1051 -3885 372 22 0 0 chrX 144265622 144265667 -32708473 + (TG)n Simple_repeat Simple_repeat 2 46 0 1743 150 83 3 chrX 144265704 144266043 -32708097 + Ricksha DNA DNA 123 488 -766 491 242 13 27 chrX 144265909 144266058 -32708082 + MLT2D LTR ERVL 9 155 -398 * 10554 161 25 21 chrX 144266060 144268110 -32706030 + Ricksha DNA DNA 1188 3246 0 275 187 44 178 chrX 144268112 144268427 -32705713 + MER31-int LTR ERV1 1163 1435 -3501 208 139 0 0 chrX 144268427 144268463 -32705677 + (TA)n Simple_repeat Simple_repeat 2 37 0 313 250 0 62 chrX 144268466 144268562 -32705578 - L1MC4 LINE L1 -1340 6702 6613 416 167 24 8 chrX 144268569 144268695 -32705445 + (TA)n Simple_repeat Simple_repeat 1 128 0 456 259 102 50 chrX 144268882 144269123 -32705017 + MER31-int LTR ERV1 1704 1931 -3005 2342 65 10 0 chrX 144269123 144269413 -32704727 + AluSg SINE Alu 1 293 -17 456 259 102 50 chrX 144269413 144269612 -32704528 + MER31-int LTR ERV1 1931 2167 -2769 1970 131 0 0 chrX 144269731 144270044 -32704096 - AluY SINE Alu 0 313 1 1876 256 45 49 chrX 144270272 144270393 -32703747 + L1MCb LINE L1 104 224 -5821 2225 85 0 4 chrX 144270393 144270730 -32703410 - AluSg SINE Alu 0 337 2 1876 256 45 49 chrX 144270730 144270959 -32703181 + L1MCb LINE L1 224 452 -5593 1899 230 29 40 chrX 144270959 144271485 -32702655 - MLT2B1 LTR ERVL 0 520 1 1876 256 45 49 chrX 144271485 144271914 -32702226 + L1MCb LINE L1 452 882 -5163 1820 213 59 97 chrX 144271914 144272563 -32701577 + MER92B LTR ERV1 1 624 -12 2917 229 48 58 chrX 144272573 144273401 -32700739 + L1MCb LINE L1 879 1714 -5031 1999 109 53 0 chrX 144273401 144273685 -32700455 + AluSp SINE Alu 1 299 -14 2917 229 48 58 chrX 144273685 144274478 -32699662 + L1MCb LINE L1 1714 2697 -4048 525 240 48 16 chrX 144275232 144275357 -32698783 - L2 LINE L2 -8 3305 3177 379 304 9 27 chrX 144275423 144275535 -32698605 - MIR SINE MIR -66 142 33 215 193 35 0 chrX 144276170 144276227 -32697913 + T-rich Low_complexity Low_complexity 3 61 0 230 413 54 31 chrX 144276280 144276857 -32697283 + L2 LINE L2 2243 2832 -482 192 378 59 7 chrX 144276865 144277000 -32697140 - L2 LINE L2 -513 2801 2660 236 336 19 19 chrX 144277039 144277146 -32696994 - L3 LINE CR1 -235 1342 1236 3016 271 67 7 chrX 144277153 144278019 -32696121 - L2 LINE L2 -518 2796 1879 968 259 128 41 chrX 144278019 144278523 -32695617 - MLT1G1 LTR MaLR 0 595 8 397 41 0 0 chrX 144278523 144278572 -32695568 + AluY SINE Alu 14 62 -241 216 0 0 0 chrX 144278591 144278615 -32695525 + (A)n Simple_repeat Simple_repeat 1 24 0 12423 189 30 5 chrX 144278624 144280931 -32693209 + L1M1 LINE L1 204 2566 -4999 6375 169 7 2 chrX 144280925 144282064 -32692076 - L1P LINE L1 -1013 5133 3989 * 1259 184 40 0 chrX 144282064 144282287 -32691853 + MSTB LTR MaLR 195 426 0 1780 144 87 31 chrX 144282331 144282686 -32691454 + THE1C LTR MaLR 1 375 0 1539 210 0 0 chrX 144282702 144282983 -32691157 - AluJo SINE Alu -31 281 1 2116 194 24 10 chrX 144282983 144283690 -32690450 - L1M3 LINE L1 -567 5616 4899 222 326 84 0 chrX 144285398 144285493 -32688647 + L2 LINE L2 3155 3257 -15 1228 175 0 9 chrX 144285858 144286086 -32688054 + L1PA15 LINE L1 5940 6165 0 378 307 92 18 chrX 144286109 144286272 -32687868 - L1ME LINE L1 -530 5632 5458 263 274 0 0 chrX 144286332 144286394 -32687746 - MIR SINE MIR -123 139 78 1862 158 117 31 chrX 144286880 144287272 -32686868 + MSTA LTR MaLR 1 426 -2 411 240 93 49 chrX 144287577 144287760 -32686380 + MIR SINE MIR 71 261 -1 2532 47 3 0 chrX 144287929 144288229 -32685911 + AluY SINE Alu 3 303 -8 635 309 29 0 chrX 144288434 144288638 -32685502 + MER63A DNA MER1_type 1 210 0 339 269 64 84 chrX 144288846 144289095 -32685045 + L1ME4a LINE L1 5873 6116 -5 319 222 42 85 chrX 144289445 144289657 -32684483 - L1MEc LINE L1 -4164 2232 2030 28 29 0 0 chrX 144289744 144289779 -32684361 + AT_rich Low_complexity Low_complexity 1 35 0 2360 46 0 3 chrX 144289945 144290256 -32683884 - AluY SINE Alu 0 310 1 2912 258 74 17 chrX 144290309 144291287 -32682853 + L1MEc LINE L1 42 1074 -5322 259 164 0 18 chrX 144291287 144291342 -32682798 + MER116 DNA Mariner 27 80 0 30 0 0 0 chrX 144291464 144291494 -32682646 + AT_rich Low_complexity Low_complexity 1 30 0 2762 233 133 16 chrX 144291512 144292918 -32681222 + L1MEc LINE L1 1974 3536 -2679 1574 193 154 14 chrX 144292919 144293277 -32680863 + MLT2C2 LTR ERVL 6 413 -51 329 221 41 0 chrX 144293285 144293407 -32680733 + (TA)n Simple_repeat Simple_repeat 1 127 0 263 95 32 32 chrX 144293428 144293491 -32680649 + (TA)n Simple_repeat Simple_repeat 1 63 0 351 123 0 31 chrX 144293493 144293558 -32680582 + MLT2C2 LTR ERVL 458 520 0 310 150 38 38 chrX 144293559 144293639 -32680501 + HERVL-C2 LTR ERVL 2 81 -5573 749 296 42 21 chrX 144293654 144293938 -32680202 + HERVL-C2 LTR ERVL 211 500 -5264 * 2331 157 9 69 chrX 144293926 144294392 -32679748 + ERVL LTR ERVL 3477 3914 -1850 515 270 116 26 chrX 144294410 144294799 -32679341 - MER97b DNA MER1_type? -25 1028 605 438 298 29 53 chrX 144294826 144295034 -32679106 - MER97a DNA MER1_type? -366 528 326 3599 174 6 8 chrX 144295034 144295691 -32678449 - L1MB4 LINE L1 -201 5979 5324 834 205 6 0 chrX 144295691 144295870 -32678270 - AluJb SINE Alu 0 305 126 2002 128 0 10 chrX 144295871 144296035 -32678105 - AluSx SINE Alu -15 297 136 2524 44 0 3 chrX 144296035 144296331 -32677809 - AluY SINE Alu -16 295 1 2002 128 0 10 chrX 144296331 144296463 -32677677 - AluSx SINE Alu -176 136 4 382 275 50 8 chrX 144296547 144296667 -32677473 - MER97a DNA MER1_type? -683 211 87 567 240 116 17 chrX 144296673 144296906 -32677234 - L1ME2 LINE L1 -167 5997 5742 633 223 64 119 chrX 144297155 144297330 -32676810 + MLT2B1 LTR ERVL 283 466 -54 2210 122 51 20 chrX 144297330 144297683 -32676457 - THE1B LTR MaLR 0 364 1 11436 93 23 1 chrX 144297683 144299228 -32674912 - THE1B-int LTR MaLR 0 1580 1 2230 122 48 20 chrX 144299228 144299580 -32674560 - THE1B LTR MaLR 0 364 3 633 223 64 119 chrX 144299580 144299653 -32674487 + MLT2B1 LTR ERVL 463 519 -1 504 212 31 57 chrX 144299654 144299847 -32674293 + L1ME1 LINE L1 5828 6015 -151 486 159 0 0 chrX 144300123 144300211 -32673929 + (TA)n Simple_repeat Simple_repeat 2 89 0 574 259 148 6 chrX 144300337 144300499 -32673641 - MER5A DNA MER1_type -1 188 4 2363 100 0 7 chrX 144301092 144301402 -32672738 + AluSx SINE Alu 1 308 -4 300 312 18 42 chrX 144303477 144303636 -32670504 + MIR3 SINE MIR 12 172 -36 21 0 0 0 chrX 144303676 144303697 -32670443 + AT_rich Low_complexity Low_complexity 1 21 0 1490 180 43 25 chrX 144303897 144304219 -32669921 + MLT2C1 LTR ERVL 1 328 -69 273 262 24 0 chrX 144304238 144304364 -32669776 + (TA)n Simple_repeat Simple_repeat 1 129 0 1465 203 41 17 chrX 144304438 144304783 -32669357 + MLT1C LTR MaLR 115 467 0 230 132 38 19 chrX 144304783 144304831 -32669309 + MLT2C1 LTR ERVL 470 518 -2 4775 167 8 3 chrX 144304998 144305879 -32668261 - L1MA4A LINE L1 -2 6301 5417 12507 218 38 30 chrX 144306217 144310445 -32663695 + L1PB3 LINE L1 3 3309 -3561 2241 169 31 14 chrX 144310445 144310866 -32663274 + MSTA LTR MaLR 1 428 0 12507 218 38 30 chrX 144310866 144314451 -32659689 + L1PB3 LINE L1 3309 6863 -7 3320 219 33 43 chrX 144314469 144316074 -32658066 - L1MB1 LINE L1 -129 6039 4451 30 69 0 0 chrX 144316127 144316185 -32657955 + AT_rich Low_complexity Low_complexity 1 58 0 805 301 73 52 chrX 144317197 144317682 -32656458 - L2 LINE L2 -208 3064 2579 460 320 51 32 chrX 144317828 144318230 -32655910 + LTR33 LTR ERVL 77 512 -9 4138 191 6 8 chrX 144320260 144321088 -32653052 + L1PB4 LINE L1 5330 6155 -1 29 28 0 0 chrX 144321196 144321232 -32652908 + AT_rich Low_complexity Low_complexity 1 36 0 3104 177 17 8 chrX 144321236 144321875 -32652265 - L1MA6 LINE L1 -7 6293 5649 7285 202 29 24 chrX 144321875 144324011 -32650129 + L1M2 LINE L1 824 2947 -3901 2019 193 65 0 chrX 144324011 144324410 -32649730 + MSTB LTR MaLR 2 426 0 7285 202 29 24 chrX 144324410 144325412 -32648728 + L1M2 LINE L1 2947 3999 -2849 1515 217 100 89 chrX 144325412 144325960 -32648180 - MLT2B3 LTR ERVL 0 554 1 7285 202 29 24 chrX 144325960 144326675 -32647465 + L1M2 LINE L1 3999 4709 -2139 2293 148 75 5 chrX 144326675 144327073 -32647067 + MSTB LTR MaLR 1 426 0 2134 200 9 11 chrX 144327073 144327532 -32646608 + MSTB-int LTR MaLR 1 458 -1193 1841 135 148 21 chrX 144327535 144327912 -32646228 - MSTA LTR MaLR -3 425 1 4619 216 7 2 chrX 144327912 144328862 -32645278 + MSTB-int LTR MaLR 454 1408 -243 955 291 21 0 chrX 144329089 144329323 -32644817 + MIR SINE MIR 24 262 0 270 309 99 44 chrX 144329782 144329963 -32644177 - L2 LINE L2 -10 3303 3113 207 309 79 20 chrX 144331030 144331182 -32642958 - L2 LINE L2 -1269 2045 1885 282 303 118 20 chrX 144331838 144331990 -32642150 - MIR SINE MIR 0 262 96 424 332 30 27 chrX 144332538 144332836 -32641304 + L2 LINE L2 2150 2448 -866 269 250 0 0 chrX 144332942 144332994 -32641146 - L2 LINE L2 0 3313 3262 186 268 0 36 chrX 144333012 144333068 -32641072 + L2 LINE L2 2918 2971 -301 31 0 0 0 chrX 144333995 144334026 -32640114 + AT_rich Low_complexity Low_complexity 1 31 0 222 62 0 0 chrX 144334804 144334836 -32639304 + (TG)n Simple_repeat Simple_repeat 2 33 0 2042 97 45 3 chrX 144335448 144335737 -32638403 - AluSg SINE Alu -9 301 1 181 182 23 45 chrX 144336053 144336097 -32638043 - MIR SINE MIR 0 262 220 321 240 179 90 chrX 144336134 144336413 -32637727 - LTR16A1 LTR ERVL -7 450 147 1465 143 115 99 chrX 144336577 144336961 -32637179 + MLT1B LTR MaLR 1 390 0 278 180 16 0 chrX 144337725 144337786 -32636354 + (TA)n Simple_repeat Simple_repeat 1 62 0 547 265 60 0 chrX 144337802 144337953 -32636187 + MIR SINE MIR 91 250 -12 442 130 0 0 chrX 144338921 144338990 -32635150 - L1M LINE L1 -787 5393 5325 2036 152 0 0 chrX 144338992 144339282 -32634858 - AluSx SINE Alu -14 298 9 3918 222 157 13 chrX 144339553 144340946 -32633194 + L1P LINE L1 2730 4323 -1823 1116 57 0 0 chrX 144340975 144341134 -32633006 + L1P LINE L1 5003 5161 -985 526 222 10 21 chrX 144341133 144341327 -32632813 + L1 LINE L1 2982 3173 -2973 * 6109 93 24 4 chrX 144341347 144342568 -32631572 + L1PA11 LINE L1 4943 6174 0 3692 177 18 5 chrX 144342587 144343366 -32630774 + L1 LINE L1 4336 5124 -1022 1114 189 5 0 chrX 144343366 144343588 -32630552 - L1M2 LINE L1 -625 5666 5444 2293 89 3 0 chrX 144343603 144343907 -32630233 - AluY SINE Alu -6 305 1 230 225 28 0 chrX 144343943 144344014 -32630126 + L1MB7 LINE L1 6112 6184 0 21 36 0 0 chrX 144344089 144344117 -32630023 + AT_rich Low_complexity Low_complexity 1 28 0 1163 189 12 0 chrX 144344117 144344366 -32629774 - L1MA6 LINE L1 0 6300 6049 759 288 93 0 chrX 144346179 144346405 -32627735 + MIR SINE MIR 15 261 -1 5655 211 138 10 chrX 144346505 144350493 -32623647 + L1M3f LINE L1 3 4498 -1830 334 138 0 35 chrX 144350509 144350567 -32623573 + L1PA12 LINE L1 7 62 -7519 3851 138 48 6 chrX 144350590 144351510 -32622630 + L1PA11 LINE L1 5163 6155 0 2234 279 30 40 chrX 144351504 144352371 -32621769 + L1PA12 LINE L1 72 929 -6652 * 636 216 14 7 chrX 144352371 144352519 -32621621 + L1PA12 LINE L1 3323 3471 -4113 272 202 55 46 chrX 144352863 144352972 -32621168 - MER97c DNA MER1_type? -376 714 605 381 298 29 53 chrX 144352999 144353207 -32620933 - MER97c DNA MER1_type? -562 528 326 3395 174 6 8 chrX 144353207 144353864 -32620276 - L1MB4 LINE L1 -201 5979 5324 834 205 6 0 chrX 144353864 144354043 -32620097 - AluJb SINE Alu 0 305 126 2005 128 0 10 chrX 144354044 144354208 -32619932 - AluSx SINE Alu -15 297 136 2519 44 0 3 chrX 144354208 144354504 -32619636 - AluY SINE Alu -16 295 1 2005 128 0 10 chrX 144354504 144354636 -32619504 - AluSx SINE Alu -176 136 4 349 275 50 8 chrX 144354720 144354840 -32619300 - MER97b DNA MER1_type? -842 211 87 496 239 115 21 chrX 144354846 144355080 -32619060 - L1ME2 LINE L1 -167 5997 5742 557 237 41 122 chrX 144355335 144355504 -32618636 + MLT2B2 LTR ERVL 290 471 -44 2215 122 51 20 chrX 144355504 144355857 -32618283 - THE1B LTR MaLR 0 364 1 11530 93 23 0 chrX 144355857 144357401 -32616739 - THE1B-int LTR MaLR 0 1580 1 2234 122 48 20 chrX 144357401 144357753 -32616387 - THE1B LTR MaLR 0 364 3 557 237 41 122 chrX 144357753 144357826 -32616314 + MLT2B2 LTR ERVL 468 514 -1 469 230 35 25 chrX 144357827 144358020 -32616120 + L1ME1 LINE L1 5828 6022 -162 437 161 11 0 chrX 144358296 144358383 -32615757 + (TA)n Simple_repeat Simple_repeat 2 89 0 577 259 148 6 chrX 144358509 144358671 -32615469 - MER5A DNA MER1_type -1 188 4 2399 100 0 6 chrX 144359264 144359575 -32614565 + AluSx SINE Alu 1 309 -3 309 312 18 42 chrX 144361649 144361808 -32612332 + MIR3 SINE MIR 12 172 -36 21 0 0 0 chrX 144361848 144361869 -32612271 + AT_rich Low_complexity Low_complexity 1 21 0 1383 180 43 25 chrX 144362069 144362391 -32611749 + MLT2C1 LTR ERVL 1 328 -69 273 262 24 0 chrX 144362410 144362536 -32611604 + (TA)n Simple_repeat Simple_repeat 2 130 0 1350 203 41 17 chrX 144362610 144362955 -32611185 + MLT1C LTR MaLR 115 467 0 4751 165 8 3 chrX 144363170 144364051 -32610089 - L1MA4A LINE L1 -2 6301 5417 11607 219 38 29 chrX 144364389 144368617 -32605523 + L1PB3 LINE L1 3 3314 -3556 2255 166 31 14 chrX 144368617 144369038 -32605102 + MSTA LTR MaLR 1 428 0 11607 219 38 29 chrX 144369038 144372620 -32601520 + L1PB3 LINE L1 3314 6863 -7 3082 219 33 43 chrX 144372638 144374243 -32599897 - L1MB1 LINE L1 -129 6039 4451 30 69 0 0 chrX 144374296 144374354 -32599786 + AT_rich Low_complexity Low_complexity 1 58 0 797 303 73 52 chrX 144375369 144375854 -32598286 - L2 LINE L2 -208 3064 2579 460 323 51 32 chrX 144376000 144376402 -32597738 + LTR33 LTR ERVL 77 512 -9 4234 185 6 8 chrX 144378431 144379259 -32594881 + L1PB4 LINE L1 5330 6155 -1 29 28 0 0 chrX 144379367 144379403 -32594737 + AT_rich Low_complexity Low_complexity 1 36 0 3104 177 17 8 chrX 144379407 144380046 -32594094 - L1MA6 LINE L1 -7 6293 5649 9821 208 34 24 chrX 144380046 144382182 -32591958 + L1M2 LINE L1 824 2938 -3910 2035 193 65 0 chrX 144382182 144382581 -32591559 + MSTB LTR MaLR 2 426 0 9821 208 34 24 chrX 144382581 144383576 -32590564 + L1M2 LINE L1 2938 4002 -2846 1563 214 100 89 chrX 144383576 144384124 -32590016 - MLT2B3 LTR ERVL 0 554 1 9821 208 34 24 chrX 144384124 144384839 -32589301 + L1M2 LINE L1 4002 4709 -2139 2285 156 73 2 chrX 144384839 144385237 -32588903 + MSTB LTR MaLR 1 426 0 2278 200 9 11 chrX 144385237 144385696 -32588444 + MSTB-int LTR MaLR 1 458 -1193 1983 130 148 21 chrX 144385699 144386076 -32588064 - MSTA LTR MaLR -3 425 1 4938 217 7 2 chrX 144386076 144387026 -32587114 + MSTB-int LTR MaLR 454 1408 -243 961 291 21 0 chrX 144387254 144387488 -32586652 + MIR SINE MIR 24 262 0 276 309 99 44 chrX 144387947 144388128 -32586012 - L2 LINE L2 -10 3303 3113 206 309 79 20 chrX 144389241 144389393 -32584747 - L2 LINE L2 -1269 2045 1885 285 292 125 21 chrX 144390049 144390193 -32583947 - MIR SINE MIR 0 262 104 429 332 30 27 chrX 144390748 144391046 -32583094 + L2 LINE L2 2150 2448 -866 270 250 0 0 chrX 144391152 144391204 -32582936 - L2 LINE L2 0 3313 3262 184 268 0 36 chrX 144391222 144391278 -32582862 + L2 LINE L2 2918 2971 -301 31 0 0 0 chrX 144392205 144392236 -32581904 + AT_rich Low_complexity Low_complexity 1 31 0 222 62 0 0 chrX 144393014 144393046 -32581094 + (TG)n Simple_repeat Simple_repeat 2 33 0 1899 110 45 7 chrX 144393656 144393946 -32580194 - AluSg SINE Alu -9 301 1 183 182 23 45 chrX 144394262 144394306 -32579834 - MIR SINE MIR 0 262 220 419 262 135 91 chrX 144394343 144394774 -32579366 - LTR16A1 LTR ERVL -7 450 1 1472 143 115 99 chrX 144394786 144395170 -32578970 + MLT1B LTR MaLR 1 390 0 317 159 16 0 chrX 144395935 144395998 -32578142 + (TA)n Simple_repeat Simple_repeat 1 64 0 549 265 60 0 chrX 144396014 144396165 -32577975 + MIR SINE MIR 91 250 -12 481 127 0 0 chrX 144397130 144397201 -32576939 - L1M LINE L1 -787 5393 5323 1991 155 0 0 chrX 144397201 144397491 -32576649 - AluSx SINE Alu -14 298 9 4422 222 154 10 chrX 144397760 144399155 -32574985 + L1P LINE L1 2728 4323 -1823 1166 57 0 0 chrX 144399185 144399344 -32574796 + L1P LINE L1 5003 5161 -985 564 219 16 16 chrX 144399343 144399535 -32574605 + L1 LINE L1 2982 3173 -2973 * 6111 94 24 4 chrX 144399555 144400778 -32573362 + L1PA11 LINE L1 4943 6174 0 3973 179 13 5 chrX 144400798 144401581 -32572559 + L1 LINE L1 4336 5124 -1022 1185 187 25 0 chrX 144401581 144401816 -32572324 - L1M2 LINE L1 -625 5666 5426 2247 88 3 0 chrX 144401818 144402115 -32572025 - AluY SINE Alu -13 298 1 250 225 28 0 chrX 144402151 144402222 -32571918 + L1MB7 LINE L1 6112 6184 0 21 36 0 0 chrX 144402297 144402325 -32571815 + AT_rich Low_complexity Low_complexity 1 28 0 1193 189 12 0 chrX 144402325 144402574 -32571566 - L1MA6 LINE L1 0 6300 6049 785 283 93 0 chrX 144404389 144404615 -32569525 + MIR SINE MIR 15 261 -1 6105 208 143 10 chrX 144404715 144408702 -32565438 + L1M3f LINE L1 3 4498 -1830 335 155 0 35 chrX 144408718 144408776 -32565364 + L1PA12 LINE L1 7 62 -7519 4121 138 47 6 chrX 144408799 144409720 -32564420 + L1PA11 LINE L1 5163 6155 0 2515 279 30 40 chrX 144409714 144410583 -32563557 + L1PA12 LINE L1 72 931 -6650 * 1584 217 6 3 chrX 144410581 144410945 -32563195 + L1PA12 LINE L1 3323 3687 -3897 * 10494 230 26 38 chrX 144410954 144412651 -32561489 + L1PA12 LINE L1 1539 3255 -4329 270 0 0 0 chrX 144412651 144412681 -32561459 + (CA)n Simple_repeat Simple_repeat 2 31 0 10494 230 26 38 chrX 144412681 144415407 -32558733 + L1PA12 LINE L1 3255 5848 -1736 4440 231 18 14 chrX 144415443 144416409 -32557731 + L1MA4 LINE L1 11 979 -6586 3541 191 14 3 chrX 144416404 144417688 -32556452 + L1MA4 LINE L1 3153 4451 -3114 * 839 121 15 0 chrX 144417715 144417847 -32556293 + L1MA1 LINE L1 6169 6302 0 5022 180 33 13 chrX 144417849 144418080 -32556060 + L1MA4 LINE L1 6398 6623 -1096 3726 16 0 0 chrX 144418080 144418532 -32555608 + L1PA4 LINE L1 5717 6174 0 5022 180 33 13 chrX 144418532 144419600 -32554540 + L1MA4 LINE L1 6623 7717 -2 302 229 36 0 chrX 144419681 144419764 -32554376 + L1ME LINE L1 5733 5818 -303 606 239 75 35 chrX 144420721 144420922 -32553218 - MER3 DNA MER1_type 0 209 1 225 208 44 93 chrX 144421766 144421949 -32552191 + MER112 DNA MER1_type 4 177 -83 267 246 0 0 chrX 144422188 144422249 -32551891 + CT-rich Low_complexity Low_complexity 1 61 0 497 265 51 0 chrX 144423625 144423742 -32550398 - L2 LINE L2 0 3313 3191 387 261 61 0 chrX 144424012 144424127 -32550013 + L2 LINE L2 3191 3312 -1 1946 124 17 20 chrX 144424274 144424573 -32549567 + AluSx SINE Alu 1 298 -14 213 347 32 0 chrX 144425938 144426033 -32548107 - MIR SINE MIR -100 162 65 1459 280 42 37 chrX 144426697 144427031 -32547109 - L2 LINE L2 0 3313 2974 2118 202 62 21 chrX 144427031 144427516 -32546624 + MLT1D LTR MaLR 1 505 0 1459 280 42 37 chrX 144427516 144427758 -32546382 - L2 LINE L2 -339 2974 2735 2583 153 8 38 chrX 144427989 144428508 -32545632 + L1MC/D LINE L1 5197 5730 -512 207 0 0 0 chrX 144428508 144428531 -32545609 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2262 94 0 7 chrX 144428534 144428820 -32545320 - AluSg SINE Alu -25 285 2 2583 153 8 38 chrX 144428820 144428862 -32545278 + L1MC/D LINE L1 5732 5744 -498 605 257 88 122 chrX 144428892 144429382 -32544758 + L2 LINE L2 2841 3313 0 24 0 0 0 chrX 144430241 144430265 -32543875 + AT_rich Low_complexity Low_complexity 1 24 0 267 264 27 45 chrX 144430389 144430499 -32543641 + MIR3 SINE MIR 98 205 -3 2121 113 7 0 chrX 144430638 144430967 -32543173 - AluSx SINE Alu 0 312 3 450 250 25 25 chrX 144431863 144432023 -32542117 - L1ME4a LINE L1 -202 5919 5760 28 29 0 0 chrX 144433634 144433669 -32540471 + AT_rich Low_complexity Low_complexity 1 35 0 310 162 29 19 chrX 144433669 144433774 -32540366 + (TA)n Simple_repeat Simple_repeat 1 106 0 219 167 0 0 chrX 144433874 144433916 -32540224 + CT-rich Low_complexity Low_complexity 3 44 0 1280 144 0 108 chrX 144433918 144434195 -32539945 + L1MA9 LINE L1 5698 5944 -368 1260 299 94 13 chrX 144434198 144434719 -32539421 + L2 LINE L2 1757 2319 -995 609 316 45 26 chrX 144434719 144434988 -32539152 - MLT1I LTR MaLR -13 396 123 698 228 44 28 chrX 144434988 144435168 -32538972 + L2 LINE L2 3128 3310 -3 338 319 43 33 chrX 144435240 144435450 -32538690 - L1M4 LINE L1 -3147 2999 2788 19189 203 32 45 chrX 144435812 144441040 -32533100 + L1MA2 LINE L1 16 5103 -2462 222 37 0 0 chrX 144441040 144441067 -32533073 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 19189 203 32 45 chrX 144441067 144441374 -32532766 + L1MA2 LINE L1 5103 5412 -2153 2398 62 0 3 chrX 144443225 144443517 -32530623 + AluY SINE Alu 1 291 -20 2340 63 0 3 chrX 144443694 144443978 -32530162 + AluSc SINE Alu 1 283 -26 1867 174 3 11 chrX 144444040 144444390 -32529750 + L1MA2 LINE L1 5394 5740 -1825 6058 124 52 16 chrX 144444391 144445567 -32528573 + L1MA2 LINE L1 6482 7719 -4 213 250 0 47 chrX 144445921 144445985 -32528155 + C-rich Low_complexity Low_complexity 1 61 0 486 196 0 0 chrX 144446004 144446111 -32528029 + (CA)n Simple_repeat Simple_repeat 2 108 0 298 258 11 0 chrX 144446219 144446308 -32527832 + L1P LINE L1 2655 2744 -3402 3899 150 9 2 chrX 144446309 144447298 -32526842 - L1P4 LINE L1 -520 5643 4651 1566 106 4 4 chrX 144447298 144447523 -32526617 + L1PA13 LINE L1 5914 6149 -14 1967 224 13 9 chrX 144447525 144448052 -32526088 + L1P LINE L1 2740 3268 -2878 * 14236 159 27 6 chrX 144448048 144450859 -32523281 + L1PA12 LINE L1 1 3072 -4509 2659 122 5 10 chrX 144450866 144451261 -32522879 + THE1C-int LTR MaLR 1188 1580 0 1641 136 76 60 chrX 144451261 144451630 -32522510 + THE1C LTR MaLR 1 375 0 1947 203 25 40 chrX 144451630 144452074 -32522066 - MLT1C LTR MaLR -16 451 15 315 200 0 0 chrX 144452079 144452149 -32521991 + L1 LINE L1 4771 4840 -1306 9007 205 20 11 chrX 144452284 144452465 -32521675 + L1MB1 LINE L1 3142 3320 -2848 836 221 83 71 chrX 144452465 144452804 -32521336 + MER2 DNA MER2_type 2 344 0 9007 205 20 11 chrX 144452804 144454766 -32519374 + L1MB1 LINE L1 3320 5314 -854 396 0 0 0 chrX 144454766 144454810 -32519330 + (CA)n Simple_repeat Simple_repeat 1 44 0 9007 205 20 11 chrX 144454810 144455357 -32518783 + L1MB1 LINE L1 5314 5855 -313 1651 170 13 10 chrX 144455441 144455747 -32518393 + L1MB1 LINE L1 5861 6167 -1 412 103 0 39 chrX 144455817 144455895 -32518245 + (GGGA)n Simple_repeat Simple_repeat 2 76 0 1347 277 61 31 chrX 144455913 144456618 -32517522 - L1MCb LINE L1 -3311 3253 2528 1626 276 36 4 chrX 144456626 144457151 -32516989 - L1MCb LINE L1 -4924 1121 580 1157 220 128 44 chrX 144457416 144457847 -32516293 - MLT1C LTR MaLR 0 467 1 1635 207 113 5 chrX 144458626 144459017 -32515123 + MLT1D LTR MaLR 73 505 0 26 0 0 0 chrX 144460174 144460200 -32513940 + AT_rich Low_complexity Low_complexity 1 26 0 1918 223 55 32 chrX 144460351 144460845 -32513295 - MLT1D LTR MaLR 0 505 1 776 135 15 0 chrX 144461695 144461828 -32512312 + L1PA13 LINE L1 6025 6159 -4 414 234 42 54 chrX 144462267 144462434 -32511706 + L1ME4a LINE L1 5946 6110 -11 189 372 104 30 chrX 144463550 144463714 -32510426 - L2 LINE L2 -338 2976 2801 1025 312 119 2 chrX 144463745 144464165 -32509975 + L2 LINE L2 2185 2653 -661 216 0 0 0 chrX 144464176 144464200 -32509940 + (ACTAG)n Simple_repeat Simple_repeat 5 28 0 955 313 120 19 chrX 144464558 144465120 -32509020 + L2 LINE L2 2678 3312 -1 2027 106 35 0 chrX 144465493 144465775 -32508365 - AluSx SINE Alu -15 297 6 404 364 122 16 chrX 144465939 144466324 -32507816 - L2 LINE L2 -908 2406 1981 258 274 103 91 chrX 144466422 144466597 -32507543 - L2 LINE L2 0 3313 3137 4929 174 43 21 chrX 144467058 144469061 -32505079 + L1MA8 LINE L1 4256 6286 -5 449 228 33 44 chrX 144469182 144469415 -32504725 + MLT1A1 LTR MaLR 1 310 -55 1927 188 11 3 chrX 144469515 144469893 -32504247 - L1MA9 LINE L1 -350 5962 5582 1551 196 24 7 chrX 144469901 144470192 -32503948 + MSTA LTR MaLR 133 428 0 1097 211 53 32 chrX 144470192 144470546 -32503594 - L1MA9 LINE L1 -727 5585 5203 723 60 30 0 chrX 144470807 144470907 -32503233 + L1PA7 LINE L1 6052 6154 0 200 100 86 29 chrX 144472018 144472088 -32502052 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 22 35 0 0 chrX 144472478 144472507 -32501633 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 144472646 144472667 -32501473 + AT_rich Low_complexity Low_complexity 1 21 0 283 304 136 0 chrX 144475579 144475704 -32498436 - MIR SINE MIR -107 155 14 3096 236 46 1 chrX 144477554 144478445 -32495695 - L1M2 LINE L1 -4552 2297 1367 368 278 15 68 chrX 144480317 144480450 -32493690 + L2 LINE L2 2918 3043 -229 1826 137 195 3 chrX 144480462 144480821 -32493319 - MSTA LTR MaLR 0 428 1 4162 157 11 19 chrX 144480821 144481610 -32492530 - MSTA-int LTR MaLR 0 1580 798 716 238 76 116 chrX 144481713 144482214 -32491926 + MER41C LTR ERV1 72 552 -2 427 305 12 12 chrX 144482238 144482402 -32491738 - LTR33 LTR ERVL -321 200 37 3391 204 93 58 chrX 144483261 144484323 -32489817 + LTR28 LTR ERV1 1 1735 -20 2134 158 114 5 chrX 144484522 144484908 -32489232 + MSTA LTR MaLR 1 428 0 3390 183 32 3 chrX 144484908 144485598 -32488542 + MSTA-int LTR MaLR 1 710 -941 549 282 47 33 chrX 144486004 144486217 -32487923 - MIR SINE MIR -2 260 45 275 289 0 13 chrX 144486262 144486338 -32487802 - MIR SINE MIR -139 123 49 225 264 14 101 chrX 144486508 144486656 -32487484 + L2 LINE L2 2356 2490 -824 195 309 0 0 chrX 144486873 144486928 -32487212 + L2 LINE L2 2698 2752 -562 652 289 89 54 chrX 144488681 144489110 -32485030 + MLT1J1 LTR MaLR 1 444 -2 1916 145 51 14 chrX 144489298 144489649 -32484491 - L1MA9 LINE L1 0 6312 5949 1793 136 3 26 chrX 144489657 144490208 -32483932 + MER4A LTR ERV1 1 664 0 2139 113 93 4 chrX 144490210 144490665 -32483475 + MER4A-int LTR ERV1 1 555 -6043 297 0 0 0 chrX 144490671 144490704 -32483436 + (TTG)n Simple_repeat Simple_repeat 2 34 0 278 98 0 0 chrX 144490752 144490793 -32483347 + MER4A-int LTR ERV1 752 792 -5806 1137 231 43 13 chrX 144490859 144491158 -32482982 + MER4A-int LTR ERV1 1853 2160 -4171 213 39 0 0 chrX 144491221 144491247 -32482893 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1619 136 8 0 chrX 144491248 144491505 -32482635 + MER4A-int LTR ERV1 208 466 -6292 11119 136 65 30 chrX 144491505 144493861 -32480279 + MER4A-int LTR ERV1 4149 6588 -10 687 122 4 156 chrX 144493877 144494140 -32480000 + MER4A LTR ERV1 1 292 -372 366 23 0 0 chrX 144544347 144544390 -32429750 + (TG)n Simple_repeat Simple_repeat 2 44 0 180 158 0 0 chrX 144545099 144545137 -32429003 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 254 333 0 0 chrX 144545232 144545301 -32428839 - L2 LINE L2 -1 3312 3244 850 217 51 0 chrX 144545308 144545483 -32428657 - MER5A DNA MER1_type 0 189 6 410 309 19 102 chrX 144545562 144545818 -32428322 - L2 LINE L2 -179 3093 2859 217 185 169 15 chrX 144545825 144545890 -32428250 + L2 LINE L2 3197 3271 -1 305 257 0 0 chrX 144546485 144546559 -32427581 + MLT1K LTR MaLR 509 582 -6 277 259 53 29 chrX 144547131 144547283 -32426857 + MIR SINE MIR 2 153 -63 285 330 21 11 chrX 144550114 144550208 -32423932 - MIR SINE MIR -79 129 35 479 262 121 0 chrX 144550380 144550529 -32423611 - MIR SINE MIR -16 246 80 186 209 0 0 chrX 144550600 144550643 -32423497 + CT-rich Low_complexity Low_complexity 16 58 0 348 311 74 15 chrX 144552202 144552337 -32421803 - L2 LINE L2 -952 2362 2220 988 196 10 5 chrX 144552350 144552549 -32421591 + MER3 DNA MER1_type 9 208 -1 386 257 58 18 chrX 144554785 144554956 -32419184 - MER20B DNA MER1_type -8 775 598 916 279 17 14 chrX 144555659 144556006 -32418134 - MER20B DNA MER1_type -374 409 62 216 0 0 0 chrX 144556006 144556030 -32418110 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 846 364 44 40 chrX 144556301 144557051 -32417089 + L2 LINE L2 760 1512 -1802 278 321 69 31 chrX 144557249 144557408 -32416732 + MIR SINE MIR 88 252 -10 223 227 0 0 chrX 144557417 144557461 -32416679 + (CAG)n Simple_repeat Simple_repeat 1 44 0 187 333 56 0 chrX 144557461 144557533 -32416607 + L2 LINE L2 1909 1984 -1330 298 248 69 30 chrX 144557878 144557979 -32416161 + L2 LINE L2 3201 3305 -8 236 245 0 0 chrX 144558535 144558584 -32415556 + (TG)n Simple_repeat Simple_repeat 2 50 0 2459 67 3 0 chrX 144558804 144559104 -32415036 + AluSp SINE Alu 1 301 -12 11836 205 23 13 chrX 144559162 144559896 -32414244 - L1PA15 LINE L1 -4 6161 5436 2220 155 23 48 chrX 144559896 144560335 -32413805 + MSTA LTR MaLR 1 428 0 11836 205 23 13 chrX 144560335 144563096 -32411044 - L1PA15 LINE L1 -729 5436 2627 1399 341 82 46 chrX 144563654 144565014 -32409126 - L2 LINE L2 -1463 1851 443 285 193 193 23 chrX 144565273 144565361 -32408779 - L2 LINE L2 -2901 413 311 768 316 4 22 chrX 144565395 144565670 -32408470 + L2 LINE L2 2469 2738 -576 286 291 48 90 chrX 144565752 144565941 -32408199 + L2 LINE L2 2902 3082 -190 527 221 29 0 chrX 144566478 144566618 -32407522 - L1MD3 LINE L1 -13 7982 7839 308 365 156 6 chrX 144566861 144567028 -32407112 + MIR3 SINE MIR 6 197 -11 1401 274 47 7 chrX 144567754 144568203 -32405937 - MLT1C LTR MaLR 0 467 1 2061 98 56 0 chrX 144568330 144568616 -32405524 + AluSx SINE Alu 3 304 -8 28 29 0 0 chrX 144568670 144568705 -32405435 + AT_rich Low_complexity Low_complexity 1 35 0 315 214 77 77 chrX 144568824 144568941 -32405199 + MIR3 SINE MIR 87 203 -5 2433 79 0 0 chrX 144569521 144569826 -32404314 - AluSc SINE Alu -4 305 1 337 316 67 91 chrX 144569890 144570098 -32404042 + L2 LINE L2 2451 2662 -610 551 137 20 0 chrX 144570098 144570200 -32403940 - L1MA4 LINE L1 -9 6291 6188 337 316 67 91 chrX 144570200 144570616 -32403524 + L2 LINE L2 2662 3060 -212 1302 296 43 25 chrX 144570957 144571564 -32402576 - L1MCb LINE L1 -5427 618 1 291 276 69 35 chrX 144571576 144571721 -32402419 + L2 LINE L2 3120 3269 -44 1977 148 0 25 chrX 144571826 144572179 -32401961 + AluSx SINE Alu 3 347 0 5778 249 60 35 chrX 144572216 144572737 -32401403 + L1MC3 LINE L1 2713 3220 -2926 2147 108 0 13 chrX 144572737 144573053 -32401087 + AluSx SINE Alu 1 312 0 5778 249 60 35 chrX 144573053 144575084 -32399056 + L1MC3 LINE L1 3219 5329 -817 7254 29 1 1 chrX 144575085 144576760 -32397380 + L1PA4 LINE L1 4476 6150 -5 4943 221 34 10 chrX 144576754 144578050 -32396090 + L1MC3 LINE L1 5317 6643 -1142 * 1267 180 4 0 chrX 144578058 144578286 -32395854 - MER46A DNA MER2_type -6 230 2 1286 199 50 35 chrX 144578286 144578683 -32395457 + L1MC3 LINE L1 6643 7045 -740 317 267 0 22 chrX 144578683 144578773 -32395367 - L1MC4 LINE L1 -1339 6703 6616 * 320 258 22 0 chrX 144578731 144578820 -32395320 + L1MC4 LINE L1 6614 6704 -1338 213 122 0 61 chrX 144578821 144578870 -32395270 + (TA)n Simple_repeat Simple_repeat 1 46 0 356 267 74 0 chrX 144578870 144579005 -32395135 - L1MC3 LINE L1 -798 6987 6843 189 0 0 0 chrX 144579043 144579064 -32395076 + (TA)n Simple_repeat Simple_repeat 1 21 0 1575 184 10 0 chrX 144579136 144579424 -32394716 + L1MC3 LINE L1 7038 7328 -457 662 218 19 6 chrX 144579426 144579582 -32394558 - MLT1A1 LTR MaLR -3 362 205 2663 75 8 34 chrX 144579587 144579934 -32394206 - L1PA10 LINE L1 0 6168 5830 2292 110 0 3 chrX 144579934 144580242 -32393898 - AluSg SINE Alu -3 307 1 2663 75 8 34 chrX 144580242 144580281 -32393859 - L1PA10 LINE L1 -338 5830 5792 366 177 38 0 chrX 144580281 144580360 -32393780 + MLT1E3 LTR MaLR 543 624 0 1356 247 12 18 chrX 144580410 144580750 -32393390 - L2 LINE L2 -580 2734 2397 563 249 73 11 chrX 144580882 144581059 -32393081 - MIR SINE MIR -11 251 64 270 277 0 142 chrX 144581056 144581126 -32393014 + MIR SINE MIR 8 50 -212 * 2118 102 7 10 chrX 144581126 144581419 -32392721 + AluSg SINE Alu 1 292 -18 270 277 0 142 chrX 144581419 144581489 -32392651 + MIR SINE MIR 50 128 -134 207 292 0 0 chrX 144581515 144581563 -32392577 - MIR SINE MIR -56 206 159 314 357 136 28 chrX 144581875 144582088 -32392052 - MIR SINE MIR -16 246 11 1084 231 48 66 chrX 144582212 144582654 -32391486 + LTR55 LTR ERV 113 546 -2 953 174 28 43 chrX 144582710 144582963 -32391177 - L1MB8 LINE L1 -5 6173 5925 374 354 0 0 chrX 144583247 144583346 -32390794 + L2 LINE L2 3158 3256 -16 280 243 146 10 chrX 144583417 144583520 -32390620 + MIR SINE MIR 102 218 -44 180 358 0 42 chrX 144583519 144583614 -32390526 - MIR SINE MIR -126 136 46 * 415 304 71 24 chrX 144585165 144585333 -32388807 + MIR SINE MIR 81 256 -6 742 278 22 18 chrX 144585671 144585894 -32388246 - MIR SINE MIR -2 260 37 1884 157 96 78 chrX 144586023 144586576 -32387564 + MER61A-int LTR ERV1 215 777 -4440 1133 88 44 10 chrX 144586569 144586816 -32387324 + MER61A-int LTR ERV1 1320 1621 -3596 * 355 44 0 0 chrX 144586831 144586876 -32387264 + MER61A-int LTR ERV1 5173 5217 0 1946 115 75 9 chrX 144586876 144587198 -32386942 + MER61A LTR ERV1 1 343 0 335 83 0 0 chrX 144587203 144587251 -32386889 + L1ME1 LINE L1 5709 5756 -428 501 244 4 83 chrX 144587269 144587498 -32386642 + L1ME1 LINE L1 5929 6139 -27 247 266 38 13 chrX 144587518 144587597 -32386543 + MIR SINE MIR 137 217 -45 620 165 57 43 chrX 144587844 144588040 -32386100 + MER6 DNA MER2_type -65 865 0 223 293 0 0 chrX 144588044 144588102 -32386038 + (TA)n Simple_repeat Simple_repeat 1 58 0 446 345 94 20 chrX 144588233 144588436 -32385704 - MIR SINE MIR -19 243 26 2255 84 0 14 chrX 144588814 144589123 -32385017 - AluSc SINE Alu 0 305 1 542 319 17 30 chrX 144589451 144589686 -32384454 + MIR SINE MIR 31 262 0 2072 124 3 10 chrX 144589958 144590302 -32383838 + AluSq SINE Alu 1 313 0 425 277 23 8 chrX 144590338 144590468 -32383672 - MIR SINE MIR -10 252 121 224 280 0 0 chrX 144590572 144590622 -32383518 + (TG)n Simple_repeat Simple_repeat 1 50 0 8188 55 9 0 chrX 144591384 144592341 -32381799 - LTR5 LTR ERVK -3 966 1 6255 93 23 0 chrX 144592627 144593881 -32380259 + L1PA11 LINE L1 4900 6173 -1 449 315 23 72 chrX 144594279 144594490 -32379650 + MLT1I LTR MaLR 63 252 -157 2353 91 7 0 chrX 144594490 144594797 -32379343 + AluSc SINE Alu 1 309 0 449 315 23 72 chrX 144594797 144594934 -32379206 + MLT1I LTR MaLR 252 394 -15 1920 97 18 3 chrX 144596139 144596531 -32377609 + LTR7 LTR ERV1 1 448 -2 267 333 0 35 chrX 144598490 144598634 -32375506 + L3 LINE CR1 1145 1283 -294 204 135 0 0 chrX 144598679 144598716 -32375424 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 384 246 135 63 chrX 144599215 144599313 -32374827 - MIR SINE MIR 0 262 173 2338 99 0 3 chrX 144599313 144599625 -32374515 - AluSq SINE Alu -2 311 1 384 246 135 63 chrX 144599625 144599733 -32374407 - MIR SINE MIR -89 173 41 246 256 35 0 chrX 144599838 144599924 -32374216 + MER103 DNA DNA 1 89 -77 278 333 8 26 chrX 144600588 144600705 -32373435 + L2 LINE L2 2640 2754 -560 288 288 144 0 chrX 144600964 144601082 -32373058 + L2 LINE L2 3136 3270 -2 357 331 62 0 chrX 144602035 144602165 -32371975 + L2 LINE L2 3176 3313 0 841 269 17 13 chrX 144602212 144602450 -32371690 + MIR SINE MIR 9 247 -15 403 311 25 37 chrX 144603047 144603208 -32370932 + MIR SINE MIR 10 168 -94 257 374 41 14 chrX 144603275 144603422 -32370718 - L2 LINE L2 -3 3310 3160 2299 167 62 2 chrX 144603447 144603849 -32370291 + MSTB LTR MaLR 1 426 0 2374 70 0 0 chrX 144604284 144604600 -32369540 + AluY SINE Alu 1 316 0 2213 104 0 7 chrX 144604692 144604990 -32369150 - AluSq SINE Alu -17 296 1 2944 127 0 9 chrX 144606243 144606699 -32367441 + L1PA15 LINE L1 5710 6161 -4 5513 148 21 4 chrX 144606956 144607967 -32366173 + L1MA7 LINE L1 5254 6281 -10 605 310 87 12 chrX 144609017 144609259 -32364881 + MIR SINE MIR 3 262 0 2098 126 80 6 chrX 144609385 144609734 -32364406 + THE1C LTR MaLR 1 375 0 430 211 211 9 chrX 144610658 144610767 -32363373 + FLAM_C SINE Alu 1 131 -12 1360 193 100 15 chrX 144610773 144611042 -32363098 + AluJo SINE Alu 1 292 -20 251 327 10 40 chrX 144611411 144611512 -32362628 + MIR SINE MIR 28 125 -137 258 140 53 0 chrX 144612173 144612230 -32361910 - L1MA9 LINE L1 -373 5939 5880 1113 210 45 93 chrX 144613133 144613552 -32360588 + MLT1I LTR MaLR 3 401 -8 198 0 0 0 chrX 144613555 144613577 -32360563 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 2189 97 21 0 chrX 144613921 144614209 -32359931 + AluSq SINE Alu 1 294 -19 7347 197 78 17 chrX 144614330 144615992 -32358148 + L1M1 LINE L1 16 1778 -5787 5149 140 14 6 chrX 144615996 144616931 -32357209 + L1M1 LINE L1 2408 3349 -4216 660 154 24 0 chrX 144616944 144617067 -32357073 + L1M1 LINE L1 4929 5054 -2511 2895 188 44 11 chrX 144617070 144617906 -32356234 + L1M1 LINE L1 5287 6196 -1369 1253 118 84 17 chrX 144617906 144618143 -32355997 - THE1C LTR MaLR 0 375 123 9084 118 33 7 chrX 144618143 144619568 -32354572 - THE1C-int LTR MaLR -118 1462 1 1824 166 62 8 chrX 144619568 144619924 -32354216 - THE1C LTR MaLR 0 375 1 1981 203 66 4 chrX 144619924 144620452 -32353688 + L1M1 LINE L1 6192 6752 -813 6046 101 23 8 chrX 144620473 144621472 -32352668 + L1MA1 LINE L1 6704 7721 0 376 346 41 88 chrX 144622219 144622560 -32351580 - L2 LINE L2 -45 3227 2903 553 339 26 0 chrX 144622810 144623005 -32351135 + MIR SINE MIR 2 201 -61 652 258 100 29 chrX 144623007 144623247 -32350893 + MIR SINE MIR 6 262 0 200 267 50 33 chrX 144623345 144623405 -32350735 + MIR SINE MIR 90 150 -58 214 178 219 0 chrX 144623407 144623480 -32350660 - MER5C DNA MER1_type -3 321 233 306 223 134 27 chrX 144623506 144623618 -32350522 - MER5C DNA MER1_type -200 124 1 375 261 151 17 chrX 144624355 144624474 -32349666 + L2 LINE L2 3179 3313 0 328 234 26 0 chrX 144624461 144624538 -32349602 + MIR SINE MIR 184 262 0 * 1340 269 121 4 chrX 144624683 144625221 -32348919 - L1ME3 LINE L1 -4 6158 5558 340 283 56 11 chrX 144625227 144625407 -32348733 + L1MEc LINE L1 24 211 -6185 267 264 0 0 chrX 144625611 144625683 -32348457 - L1MC4 LINE L1 -15 8027 7956 1766 273 58 26 chrX 144625726 144626456 -32347684 - L1MC4 LINE L1 -372 7670 6918 1014 217 108 12 chrX 144626458 144626496 -32347644 - MLT2B1 LTR ERVL -3 411 378 240 35 0 0 chrX 144626496 144626525 -32347615 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 329 0 24 0 chrX 144626524 144626565 -32347575 + (GA)n Simple_repeat Simple_repeat 2 43 0 1014 217 108 12 chrX 144626525 144626869 -32347271 - MLT2B1 LTR ERVL -36 378 1 408 152 14 131 chrX 144626876 144627021 -32347119 - L1MC3 LINE L1 -924 6861 6734 1023 141 6 6 chrX 144627021 144627191 -32346949 - MER44D DNA MER2_type 0 705 536 392 164 250 10 chrX 144627186 144627290 -32346850 - MER44D DNA MER2_type -210 399 1 * 543 231 36 113 chrX 144627290 144627485 -32346655 - L1MD3 LINE L1 -1237 6758 6614 52 82 0 0 chrX 144627487 144627609 -32346531 + AT_rich Low_complexity Low_complexity 1 122 0 5289 168 30 23 chrX 144627609 144629087 -32345053 + L1MA6 LINE L1 4814 6300 0 385 351 27 16 chrX 144629185 144629370 -32344770 + MIR SINE MIR 60 246 -16 208 366 12 0 chrX 144629409 144629491 -32344649 - L2 LINE L2 -667 2647 2565 1156 269 46 15 chrX 144630241 144630718 -32343422 - L2 LINE L2 -188 3125 2633 2555 45 0 0 chrX 144630999 144631308 -32342832 - AluY SINE Alu -2 309 1 181 390 63 0 chrX 144632287 144632382 -32341758 + L2 LINE L2 3197 3297 -16 261 306 22 15 chrX 144632504 144632638 -32341502 + MER113 DNA MER1_type? 1 135 -386 2386 185 8 0 chrX 144632707 144633189 -32340951 - L1M2 LINE L1 -1616 4530 4045 3737 213 14 14 chrX 144633193 144634117 -32340023 + L1M2 LINE L1 4519 5443 -743 13444 146 57 8 chrX 144634122 144636423 -32337717 + Tigger1 DNA MER2_type 5 2417 -1 1791 181 6 3 chrX 144636423 144636743 -32337397 + L1M2 LINE L1 5442 5762 -538 316 252 110 146 chrX 144637097 144637541 -32336599 + HAL1b LINE L1 72 498 -850 4713 146 59 14 chrX 144637541 144638405 -32335735 + MER4D LTR ERV1 1 903 0 316 252 110 146 chrX 144638405 144638452 -32335688 + HAL1b LINE L1 498 545 -803 269 239 14 14 chrX 144638488 144638559 -32335581 - MER69 DNA AcHobo -7 2519 2449 2284 173 55 0 chrX 144639589 144639993 -32334147 - MSTB LTR MaLR 0 426 1 280 226 65 0 chrX 144640496 144640589 -32333551 - MER69 DNA AcHobo -81 2445 2347 2388 323 27 26 chrX 144640690 144641659 -32332481 + L2 LINE L2 1912 2881 -433 250 135 0 0 chrX 144641661 144641698 -32332442 - MLT2B2 LTR ERVL -476 39 3 21 82 0 0 chrX 144642131 144642180 -32331960 + AT_rich Low_complexity Low_complexity 1 49 0 307 324 201 5 chrX 144642358 144642562 -32331578 + MIR SINE MIR 11 254 -8 300 286 0 0 chrX 144642816 144642893 -32331247 - MLT1I LTR MaLR 0 409 333 180 97 0 0 chrX 144642893 144642924 -32331216 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1323 0 0 0 chrX 144642926 144643068 -32331072 - AluYa5 SINE Alu -26 285 144 529 248 27 47 chrX 144643215 144643364 -32330776 - MLT1I LTR MaLR -201 208 63 371 284 10 10 chrX 144644462 144644564 -32329576 - MIR SINE MIR -140 122 21 41 0 0 0 chrX 144644637 144644678 -32329462 + AT_rich Low_complexity Low_complexity 1 41 0 1790 162 35 35 chrX 144644678 144644874 -32329266 - L1MA7 LINE L1 -2 6289 6094 1845 186 50 31 chrX 144644874 144645298 -32328842 - MSTB1 LTR MaLR 0 432 1 1790 162 35 35 chrX 144645298 144645503 -32328637 - L1MA7 LINE L1 -196 6095 5888 853 191 0 0 chrX 144646541 144646703 -32327437 - L1MB1 LINE L1 0 6168 6007 308 305 110 99 chrX 144646817 144647109 -32327031 + HAL1 LINE L1 48 342 -2165 232 331 35 47 chrX 144647285 144647542 -32326598 + HAL1 LINE L1 701 954 -1553 180 0 0 0 chrX 144647686 144647706 -32326434 + (CAA)n Simple_repeat Simple_repeat 2 21 0 441 269 135 38 chrX 144647725 144648200 -32325940 + HAL1 LINE L1 1012 1532 -975 226 133 17 33 chrX 144648205 144648265 -32325875 + (TA)n Simple_repeat Simple_repeat 1 59 0 312 191 34 0 chrX 144648313 144648402 -32325738 + (TA)n Simple_repeat Simple_repeat 1 92 0 2219 165 21 39 chrX 144648777 144648931 -32325209 + MSTA LTR MaLR 1 156 -272 2173 84 70 0 chrX 144648931 144649218 -32324922 - AluSg SINE Alu -1 309 3 2219 165 21 39 chrX 144649218 144649499 -32324641 + MSTA LTR MaLR 156 428 0 8922 184 12 9 chrX 144649499 144651144 -32322996 + MSTA-int LTR MaLR 1 1649 -2 2113 172 54 10 chrX 144651152 144651560 -32322580 + MSTA LTR MaLR 1 426 -2 1916 329 24 16 chrX 144652088 144652756 -32321384 + L1MA8 LINE L1 1356 2028 -5468 12455 222 51 26 chrX 144652762 144653330 -32320810 + L1MA8 LINE L1 2398 2950 -4760 2814 16 0 3 chrX 144653330 144653644 -32320496 + AluYb8 SINE Alu 1 313 -5 12455 222 51 26 chrX 144653644 144654881 -32319259 + L1MA8 LINE L1 2950 4155 -3555 888 29 0 0 chrX 144654881 144654984 -32319156 + L1PA8 LINE L1 6055 6157 -15 12455 222 51 26 chrX 144654984 144655340 -32318800 + L1MA8 LINE L1 4155 4501 -3209 222 37 0 0 chrX 144655340 144655367 -32318773 + (GA)n Simple_repeat Simple_repeat 1 27 0 12455 222 51 26 chrX 144655367 144655699 -32318441 + L1MA8 LINE L1 4501 4823 -2887 2635 65 14 17 chrX 144655699 144656055 -32318085 + L1PA7 LINE L1 5800 6154 0 12455 222 51 26 chrX 144656055 144658327 -32315813 + L1MA8 LINE L1 4823 7313 -397 24 32 0 0 chrX 144658337 144658368 -32315772 + AT_rich Low_complexity Low_complexity 1 31 0 2301 84 37 0 chrX 144658775 144659073 -32315067 - AluSx SINE Alu -3 309 1 2137 103 3 0 chrX 144660645 144660963 -32313177 - AluSp SINE Alu 0 319 1 324 295 155 15 chrX 144661685 144661885 -32312255 - MARNA DNA Mariner -222 364 137 198 71 0 0 chrX 144662248 144662276 -32311864 + (TCTG)n Simple_repeat Simple_repeat 1 28 0 676 242 87 32 chrX 144662915 144663167 -32310973 + MLT1L LTR MaLR 1 266 -349 282 178 0 110 chrX 144663196 144663269 -32310871 + MIR SINE MIR 172 236 -26 5688 119 14 2 chrX 144663894 144664919 -32309221 + L1PA14 LINE L1 5120 6152 -9 742 237 20 20 chrX 144665543 144665741 -32308399 + MLT1J2 LTR MaLR 37 234 -216 2292 79 10 0 chrX 144666219 144666511 -32307629 + AluSx SINE Alu 1 295 -17 287 176 0 94 chrX 144666554 144666639 -32307501 - MADE1 DNA Mariner -3 77 1 706 195 0 0 chrX 144666867 144666990 -32307150 + FLAM_C SINE Alu 1 123 -20 2085 198 13 82 chrX 144667176 144667711 -32306429 + MLT1D LTR MaLR 8 505 0 211 291 126 16 chrX 144667721 144667848 -32306292 - L2 LINE L2 -12 3301 3161 326 317 48 28 chrX 144668379 144668524 -32305616 + MIR SINE MIR 79 226 -36 2039 230 135 20 chrX 144669822 144670409 -32303731 + MLT1E1 LTR MaLR 1 654 0 1112 175 40 0 chrX 144670618 144670818 -32303322 + MER3 DNA MER1_type 1 208 -1 683 263 112 0 chrX 144670818 144671023 -32303117 + MIR SINE MIR 30 257 -5 2346 104 0 0 chrX 144671390 144671699 -32302441 - AluSq SINE Alu -4 309 1 181 300 100 0 chrX 144673396 144673476 -32300664 + MIR SINE MIR 121 208 -54 6062 109 12 0 chrX 144675006 144676427 -32297713 + L1PA13 LINE L1 4728 6161 -2 585 310 128 18 chrX 144676431 144676760 -32297380 - MLT1J LTR MaLR -96 415 51 295 278 196 0 chrX 144677122 144677255 -32296885 - L2 LINE L2 -1 3312 3154 2435 70 6 13 chrX 144677255 144677569 -32296571 + AluSq SINE Alu 1 312 -1 249 33 0 0 chrX 144678471 144678501 -32295639 + (CA)n Simple_repeat Simple_repeat 1 30 0 822 98 0 0 chrX 144679275 144679397 -32294743 + (GGA)n Simple_repeat Simple_repeat 3 124 0 556 271 51 47 chrX 144679511 144679747 -32294393 - MIR SINE MIR -23 239 3 538 239 112 15 chrX 144680731 144680865 -32293275 + MIR3 SINE MIR 13 159 -49 364 351 15 8 chrX 144680880 144681014 -32293126 - MER5A DNA MER1_type -22 167 33 2200 80 21 7 chrX 144681116 144681404 -32292736 + AluSc SINE Alu 1 292 -17 197 156 0 22 chrX 144681557 144681602 -32292538 + GA-rich Low_complexity Low_complexity 3 46 0 2250 105 49 65 chrX 144681886 144682256 -32291884 + THE1B LTR MaLR 1 364 0 305 245 71 10 chrX 144684407 144684505 -32289635 - MER112 DNA MER1_type -6 254 151 480 216 39 0 chrX 144684597 144684699 -32289441 + MER20 DNA MER1_type 114 219 0 304 258 34 11 chrX 144684898 144684987 -32289153 + MIR SINE MIR 93 183 -79 199 345 41 0 chrX 144685152 144685252 -32288888 - MIR SINE MIR -67 141 31 532 98 0 43 chrX 144685851 144685943 -32288197 + L1PA15 LINE L1 6075 6162 -3 523 79 64 14 chrX 144688237 144688377 -32285763 + CT-rich Low_complexity Low_complexity 2 148 0 328 278 100 72 chrX 144688764 144689084 -32285056 - L1M2 LINE L1 -5624 1225 897 268 259 224 28 chrX 144689909 144690052 -32284088 + MIR3 SINE MIR 20 190 -18 191 283 71 50 chrX 144690284 144690383 -32283757 - MIR3 SINE MIR -37 171 71 212 306 194 0 chrX 144690959 144691119 -32283021 - MIR3 SINE MIR -12 196 6 389 125 11 0 chrX 144691607 144691695 -32282445 + (CA)n Simple_repeat Simple_repeat 1 89 0 231 36 0 0 chrX 144695710 144695738 -32278402 + (T)n Simple_repeat Simple_repeat 1 28 0 212 175 0 0 chrX 144695800 144695840 -32278300 + T-rich Low_complexity Low_complexity 2 41 0 23 33 0 0 chrX 144696348 144696378 -32277762 + AT_rich Low_complexity Low_complexity 1 30 0 241 265 112 41 chrX 144699004 144699102 -32275038 - L2 LINE L2 0 3313 3209 188 135 0 58 chrX 144699360 144699412 -32274728 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 2400 90 6 3 chrX 144701484 144701796 -32272344 + AluSq SINE Alu 1 313 0 32 0 0 0 chrX 144701898 144701930 -32272210 + AT_rich Low_complexity Low_complexity 1 32 0 206 276 0 81 chrX 144702140 144702227 -32271913 + L2 LINE L2 3234 3313 0 297 0 0 0 chrX 144702382 144702415 -32271725 + (CA)n Simple_repeat Simple_repeat 2 34 0 314 301 105 20 chrX 144702856 144703009 -32271131 + MIR3 SINE MIR 37 202 -6 244 360 0 0 chrX 144704605 144704691 -32269449 + MIR SINE MIR 50 135 -73 27 81 0 0 chrX 144807677 144807739 -32166401 + AT_rich Low_complexity Low_complexity 1 62 0 242 111 0 0 chrX 144808581 144808626 -32165514 - LTR66 LTR ERVL -171 439 395 * 246 121 0 69 chrX 144808593 144808651 -32165489 + LTR66 LTR ERVL 398 451 -159 21 0 0 0 chrX 144809598 144809619 -32164521 + AT_rich Low_complexity Low_complexity 1 21 0 3653 256 46 24 chrX 144810007 144811405 -32162735 + L1MC/D LINE L1 2701 4129 -2017 309 109 0 0 chrX 144811405 144811460 -32162680 + (TA)n Simple_repeat Simple_repeat 2 56 0 192 40 0 0 chrX 144811459 144811484 -32162656 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 10612 128 13 13 chrX 144811887 144813537 -32160603 - Tigger2 DNA MER2_type -470 2248 600 357 261 39 46 chrX 144813538 144813691 -32160449 - L1MA9 LINE L1 -200 6112 5961 225 0 0 0 chrX 144813800 144813825 -32160315 + (GA)n Simple_repeat Simple_repeat 2 26 0 2665 228 36 19 chrX 144813830 144813887 -32160253 + L1MC/D LINE L1 4639 4694 -1665 755 203 0 0 chrX 144813887 144814020 -32160120 + FLAM_C SINE Alu 1 133 0 2665 228 36 19 chrX 144814020 144815121 -32159019 + L1MC/D LINE L1 4694 5822 -537 598 198 8 0 chrX 144815130 144815256 -32158884 + L1 LINE L1 4969 5095 -1051 8508 148 11 24 chrX 144815273 144816527 -32157613 + LTR57-int LTR ERVL 564 1796 -3547 1811 153 143 11 chrX 144816527 144816905 -32157235 + MSTA LTR MaLR 1 428 0 8508 148 11 24 chrX 144816905 144817150 -32156990 + LTR57-int LTR ERVL 1796 2043 -3300 198 280 32 54 chrX 144818060 144818153 -32155987 - MIR SINE MIR -44 218 128 26 50 0 0 chrX 144818460 144818500 -32155640 + AT_rich Low_complexity Low_complexity 1 40 0 2125 174 15 20 chrX 144818973 144819376 -32154764 + MLT2C2 LTR ERVL 3 403 -61 216 67 0 0 chrX 144819419 144819449 -32154691 + (TG)n Simple_repeat Simple_repeat 1 30 0 1768 152 58 22 chrX 144819943 144820305 -32153835 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 144820377 144820405 -32153735 + AT_rich Low_complexity Low_complexity 1 28 0 1668 178 11 4 chrX 144821073 144821354 -32152786 + AluJb SINE Alu 3 285 -27 316 273 13 84 chrX 144821521 144821675 -32152465 - MIR SINE MIR -4 258 116 225 293 61 0 chrX 144822408 144822507 -32151633 + L1ME LINE L1 4475 4579 -1567 599 201 69 0 chrX 144822883 144823042 -32151098 + L1M4 LINE L1 3832 4001 -2145 591 245 122 5 chrX 144824245 144824409 -32149731 + MER5A DNA MER1_type 4 189 0 263 266 65 52 chrX 144824412 144824566 -32149574 + L1MEd LINE L1 31 186 -5933 1994 158 119 10 chrX 144824823 144825209 -32148931 + MSTA LTR MaLR 1 428 0 585 281 12 40 chrX 144825223 144825565 -32148575 + L1ME LINE L1 5373 5703 -467 212 86 29 0 chrX 144825575 144825610 -32148530 + (TTA)n Simple_repeat Simple_repeat 2 37 0 25 51 0 0 chrX 144825702 144825741 -32148399 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chrX 144825760 144825783 -32148357 + AT_rich Low_complexity Low_complexity 1 23 0 43 35 0 0 chrX 144826413 144826470 -32147670 + AT_rich Low_complexity Low_complexity 1 57 0 367 326 68 36 chrX 144826563 144826842 -32147298 + HAL1 LINE L1 94 381 -2126 811 256 74 43 chrX 144826869 144827220 -32146920 + HAL1 LINE L1 1838 2199 -308 231 36 0 0 chrX 144827317 144827345 -32146795 + (TG)n Simple_repeat Simple_repeat 1 28 0 284 120 20 0 chrX 144827345 144827395 -32146745 + GA-rich Low_complexity Low_complexity 2 52 0 421 286 75 45 chrX 144827399 144827665 -32146475 + HAL1 LINE L1 2225 2498 -9 1037 180 21 11 chrX 144827981 144828170 -32145970 - AluJo SINE Alu -26 286 96 6559 42 1 1 chrX 144828170 144828971 -32145169 - L1PA5 LINE L1 0 6154 5354 626 209 0 0 chrX 144828971 144829081 -32145059 - AluJo SINE Alu -202 110 1 2503 42 10 3 chrX 144830392 144830700 -32143440 + AluYa5 SINE Alu 1 310 -1 181 329 13 0 chrX 144831060 144831136 -32143004 + MIR SINE MIR 167 243 -19 832 65 0 0 chrX 144832402 144832509 -32141631 + L1PA7 LINE L1 6046 6152 -2 795 196 39 9 chrX 144832958 144833298 -32140842 + MSTB2 LTR MaLR 3 432 0 568 185 21 0 chrX 144833298 144833525 -32140615 + L1MA9 LINE L1 3835 4096 -2050 2451 193 58 93 chrX 144833527 144834270 -32139870 + MER50 LTR ERV1 2 718 -16 1932 176 49 5 chrX 144834287 144834735 -32139405 + L1MA9 LINE L1 4094 4561 -1585 12025 219 39 35 chrX 144834735 144837547 -32136593 + L1P LINE L1 1482 4309 -1837 2343 127 25 0 chrX 144837547 144837902 -32136238 - THE1B LTR MaLR 0 364 1 12025 219 39 35 chrX 144837902 144838349 -32135791 + L1P LINE L1 4309 4753 -1393 8704 102 1 40 chrX 144838357 144839233 -32134907 - HERVL-A2 LTR ERVL -4395 1259 403 262 128 0 0 chrX 144839233 144839280 -32134860 - MER2 DNA MER2_type -167 178 132 8704 102 1 40 chrX 144839280 144839668 -32134472 - HERVL-A2 LTR ERVL -5251 403 1 1935 188 53 36 chrX 144839668 144840213 -32133927 - MLT2A2 LTR ERVL 0 554 1 774 152 0 70 chrX 144840215 144840373 -32133767 + L1MA9 LINE L1 5642 5788 -512 261 0 0 0 chrX 144840387 144840416 -32133724 + (CA)n Simple_repeat Simple_repeat 2 30 0 1129 188 5 5 chrX 144840513 144840721 -32133419 - MER2 DNA MER2_type -136 209 2 324 129 16 16 chrX 144840721 144840783 -32133357 + L1MA9 LINE L1 5799 5860 -431 2114 144 71 5 chrX 144840885 144841252 -32132888 + Tigger2 DNA MER2_type 2324 2714 -4 768 143 121 6 chrX 144841256 144841438 -32132702 + L1MA9 LINE L1 6110 6312 0 1015 194 44 10 chrX 144841584 144841957 -32132183 - L1MCa LINE L1 -4478 1948 1477 287 150 17 0 chrX 144842504 144842564 -32131576 + (TA)n Simple_repeat Simple_repeat 2 62 0 2351 66 0 17 chrX 144842860 144843161 -32130979 - AluY SINE Alu -13 298 3 22 0 0 0 chrX 144843352 144843374 -32130766 + AT_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chrX 144843998 144844049 -32130091 + AT_rich Low_complexity Low_complexity 1 51 0 2036 200 46 8 chrX 144845137 144845618 -32128522 - L1 LINE L1 -908 5238 4740 5296 148 48 7 chrX 144845668 144846623 -32127517 + L1MA4 LINE L1 5307 6300 0 1939 77 12 23 chrX 144846917 144847176 -32126964 + AluY SINE Alu 42 297 -14 1286 91 16 0 chrX 144847452 144847639 -32126501 - THE1B-int LTR MaLR -1390 190 1 2225 114 54 20 chrX 144847639 144847991 -32126149 - THE1B LTR MaLR 0 364 1 584 186 0 0 chrX 144847995 144848092 -32126048 - AluS SINE Alu -214 99 3 21 36 0 0 chrX 144848412 144848440 -32125700 + AT_rich Low_complexity Low_complexity 1 28 0 1032 223 33 4 chrX 144848441 144848683 -32125457 - L1MD2 LINE L1 -216 6143 5895 308 203 0 0 chrX 144848686 144848750 -32125390 - L1MA8 LINE L1 -42 6249 6186 13897 187 42 11 chrX 144848763 144851396 -32122744 - L1M1 LINE L1 -4839 2726 12 1951 169 90 0 chrX 144851388 144851717 -32122423 - L1MA8 LINE L1 -160 6131 5758 * 324 0 0 0 chrX 144851717 144851753 -32122387 + (TG)n Simple_repeat Simple_repeat 1 36 0 1951 169 90 0 chrX 144851753 144851825 -32122315 - L1MA8 LINE L1 -533 5758 5694 2125 172 25 17 chrX 144851991 144852397 -32121743 - LTR57 LTR ERVL -2 409 1 10816 174 30 11 chrX 144852397 144853652 -32120488 - LTR57-int LTR ERVL 0 5343 4039 201 74 0 0 chrX 144853652 144853679 -32120461 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 10816 174 30 11 chrX 144853679 144854276 -32119864 - LTR57-int LTR ERVL -1304 4039 3455 2521 151 41 0 chrX 144854259 144854650 -32119490 - LTR57-int LTR ERVL -2011 3332 2926 * 2496 64 3 6 chrX 144854921 144855233 -32118907 - AluY SINE Alu 0 311 1 1579 195 42 28 chrX 144855513 144855867 -32118273 + MLT1A1 LTR MaLR 1 359 -6 3661 259 42 15 chrX 144856259 144856422 -32117718 + L1M4 LINE L1 3739 3896 -2250 237 33 0 0 chrX 144856422 144856452 -32117688 + (CA)n Simple_repeat Simple_repeat 2 31 0 3661 259 42 15 chrX 144856452 144857606 -32116534 + L1M4 LINE L1 3896 5092 -1054 6806 148 21 3 chrX 144857625 144859889 -32114251 - L1MA2 LINE L1 -2 6302 4003 2360 151 27 11 chrX 144859889 144860328 -32113812 + L1MA1 LINE L1 5846 6301 -1 3713 210 66 10 chrX 144860329 144862018 -32112122 + L1MA10 LINE L1 4540 6333 -1 229 259 17 0 chrX 144862218 144862276 -32111864 + GA-rich Low_complexity Low_complexity 2 60 0 26 0 0 0 chrX 144863339 144863365 -32110775 + AT_rich Low_complexity Low_complexity 1 26 0 26 88 0 0 chrX 144863628 144863696 -32110444 + AT_rich Low_complexity Low_complexity 1 68 0 416 202 45 0 chrX 144863973 144864062 -32110078 - L1ME3A LINE L1 -1 6169 6077 393 198 0 0 chrX 144865556 144865637 -32108503 + (TA)n Simple_repeat Simple_repeat 1 81 0 2058 124 26 7 chrX 144865945 144866251 -32107889 + AluSx SINE Alu 1 312 0 3080 93 20 14 chrX 144866332 144866773 -32107367 + MLT2A1 LTR ERVL 1 444 0 1621 174 139 13 chrX 144867075 144867455 -32106685 - MSTA LTR MaLR 0 428 1 8999 197 45 19 chrX 144867960 144869666 -32104474 + L1M1 LINE L1 12 1771 -5794 423 0 0 0 chrX 144869666 144869713 -32104427 + (GA)n Simple_repeat Simple_repeat 2 48 0 8999 197 45 19 chrX 144869713 144869856 -32104284 + L1M1 LINE L1 1771 1909 -5656 11915 206 36 2 chrX 144869869 144873082 -32101058 + L1M1 LINE L1 3865 7168 -555 2018 133 57 25 chrX 144873082 144873435 -32100705 + THE1B LTR MaLR 1 364 0 8915 108 21 29 chrX 144873435 144874773 -32099367 + THE1B-int LTR MaLR 1 1327 -253 350 205 103 0 chrX 144874781 144874859 -32099281 + LTR10A LTR ERV1 13 98 -511 1464 144 86 34 chrX 144874881 144875172 -32098968 + LTR10A LTR ERV1 243 548 -61 873 238 59 30 chrX 144875177 144875510 -32098630 + Harlequin LTR ERV1 1 321 -6335 279 164 0 33 chrX 144875512 144875573 -32098567 + Harlequin LTR ERV1 283 341 -7444 2484 102 27 16 chrX 144875882 144876309 -32097831 + Harlequin LTR ERV1 713 1113 -5860 * 11117 104 42 42 chrX 144876304 144877384 -32096756 + Harlequin LTR ERV1 1219 2298 -4351 2455 54 0 3 chrX 144877384 144877678 -32096462 + AluY SINE Alu 1 293 -18 11117 104 42 42 chrX 144877678 144878974 -32095166 + Harlequin LTR ERV1 2298 5322 -1327 8003 11 0 0 chrX 144878974 144880259 -32093881 + L1HS LINE L1 4871 6155 0 5708 142 6 11 chrX 144880274 144881597 -32092543 + Harlequin LTR ERV1 3383 6645 -4 1571 157 121 26 chrX 144881610 144882042 -32092098 + LTR10A LTR ERV1 13 548 -61 1807 101 0 0 chrX 144882055 144882313 -32091827 + THE1B-int LTR MaLR 1323 1580 0 1604 103 64 83 chrX 144882313 144882625 -32091515 + THE1B LTR MaLR 1 306 -58 2612 158 37 11 chrX 144882694 144883239 -32090901 + L1MA2 LINE L1 5746 6304 0 1996 258 62 21 chrX 144883263 144884575 -32089565 + L1M4 LINE L1 1035 2388 -4571 4579 128 33 14 chrX 144884620 144885385 -32088755 + MER4E LTR ERV1 1 779 0 2055 127 0 0 chrX 144885421 144885729 -32088411 + AluSg SINE Alu 1 308 0 2132 118 6 26 chrX 144885739 144886052 -32088088 + AluSx SINE Alu 1 307 -5 321 284 27 104 chrX 144886195 144886417 -32087723 + L1M4 LINE L1 2508 2712 -4426 1779 244 70 25 chrX 144886438 144886968 -32087172 + L1M4 LINE L1 4631 5212 -1745 2134 102 0 0 chrX 144886968 144887295 -32086845 + AluY SINE Alu 1 327 0 1779 244 70 25 chrX 144887295 144887569 -32086571 + L1M4 LINE L1 5212 5472 -1485 * 2324 213 45 14 chrX 144887564 144888203 -32085937 + L1MA9 LINE L1 5616 6274 -38 926 271 47 40 chrX 144888227 144888780 -32085360 + L1M4 LINE L1 5455 6011 -946 2130 113 7 0 chrX 144889003 144889296 -32084844 + AluY SINE Alu 1 295 -16 2080 141 118 28 chrX 144889873 144890271 -32083869 - Tigger2a DNA MER2_type 0 434 1 23 33 0 0 chrX 144890274 144890304 -32083836 + AT_rich Low_complexity Low_complexity 1 30 0 2076 112 10 10 chrX 144890414 144890709 -32083431 - AluSx SINE Alu -17 295 1 22 0 0 0 chrX 144890939 144890961 -32083179 + AT_rich Low_complexity Low_complexity 1 22 0 1644 193 73 6 chrX 144892557 144892899 -32081241 + MLT1A1 LTR MaLR 1 365 0 297 241 0 25 chrX 144893277 144893356 -32080784 + GA-rich Low_complexity Low_complexity 2 78 0 1805 203 8 3 chrX 144893358 144893718 -32080422 - MLT2D LTR ERVL -52 362 1 27 29 0 0 chrX 144893854 144893888 -32080252 + AT_rich Low_complexity Low_complexity 1 34 0 2680 91 11 16 chrX 144895750 144896125 -32078015 - THE1C LTR MaLR -2 373 1 367 137 27 0 chrX 144897187 144897260 -32076880 + (TA)n Simple_repeat Simple_repeat 1 75 0 1941 116 17 10 chrX 144897260 144897554 -32076586 - AluY SINE Alu -15 296 1 351 273 10 0 chrX 144899203 144899302 -32074838 + MER3 DNA MER1_type 5 104 -105 4801 152 40 42 chrX 144899349 144900726 -32073414 - pTR5 LTR ERV1 0 2438 734 1764 189 39 0 chrX 144901355 144901688 -32072452 - MER7A DNA MER2_type -1 345 2 4943 65 5 10 chrX 144903733 144904347 -32069793 + SVA Other Other 776 1386 0 255 218 18 0 chrX 144904410 144904465 -32069675 - MIR SINE MIR -96 166 111 293 359 60 14 chrX 144905217 144905434 -32068706 - MIR SINE MIR -9 253 27 846 299 115 85 chrX 144905816 144906163 -32067977 + L3 LINE CR1 738 1073 -504 2089 114 0 33 chrX 144906163 144906469 -32067671 - AluSc SINE Alu -9 300 5 2427 72 3 0 chrX 144906472 144906764 -32067376 - AluSp SINE Alu -20 293 1 846 299 115 85 chrX 144906764 144907107 -32067033 + L3 LINE CR1 1074 1453 -124 1765 140 14 0 chrX 144907116 144907395 -32066745 + MER1A DNA MER1_type 1 283 -246 329 179 0 26 chrX 144907620 144907698 -32066442 + MER1A DNA MER1_type 291 366 -163 1690 133 7 4 chrX 144907980 144908251 -32065889 - AluSp SINE Alu -41 272 1 682 290 149 42 chrX 144908260 144908595 -32065545 + L3 LINE CR1 1083 1453 -124 1654 134 22 7 chrX 144908606 144908882 -32065258 + MER1A DNA MER1_type 4 283 -246 270 136 0 0 chrX 144909047 144909091 -32065049 - Charlie3 DNA MER1_type -8 2702 2659 1248 149 48 0 chrX 144909106 144909334 -32064806 + Charlie3 DNA MER1_type 2468 2706 -4 474 296 79 16 chrX 144910424 144910613 -32063527 - MIR SINE MIR -16 246 46 228 67 0 0 chrX 144910940 144910970 -32063170 + (CAG)n Simple_repeat Simple_repeat 3 32 0 204 286 63 0 chrX 144911411 144911474 -32062666 - MIR3 SINE MIR -32 176 110 1208 207 107 13 chrX 144912743 144913052 -32061088 + MER2 DNA MER2_type 7 344 -1 251 323 81 101 chrX 144914254 144914812 -32059328 - L2 LINE L2 -26 3246 2682 249 279 126 9 chrX 144915743 144915854 -32058286 - MIR SINE MIR -51 211 88 686 304 77 54 chrX 144916051 144916555 -32057585 - MLT1K LTR MaLR 0 588 73 708 241 10 40 chrX 144916670 144916869 -32057271 - MIR SINE MIR 0 262 70 696 241 153 19 chrX 144917075 144917382 -32056758 - MLT1L LTR MaLR -24 591 244 246 120 20 40 chrX 144917389 144917439 -32056701 + MLT1A1 LTR MaLR 1 49 -347 2402 90 0 0 chrX 144917443 144917785 -32056355 + AluY SINE Alu 1 342 0 1010 199 22 121 chrX 144917785 144918141 -32055999 + MLT1A1 LTR MaLR 45 365 0 328 216 173 93 chrX 144918234 144918396 -32055744 - MER96 DNA MER1_type 0 175 1 183 235 0 0 chrX 144918596 144918630 -32055510 + MIR3 SINE MIR 154 187 -21 1229 284 26 35 chrX 144918860 144919314 -32054826 + LTR16A LTR ERVL 1 450 0 1731 154 9 53 chrX 144920139 144920458 -32053682 + AluJo SINE Alu 4 308 -4 1656 211 89 70 chrX 144920555 144921094 -32053046 + MLT2B3 LTR ERVL 6 554 0 301 185 0 0 chrX 144922518 144922572 -32051568 - MLT1I LTR MaLR -258 151 98 1007 274 14 67 chrX 144923275 144923636 -32050504 - MLT1I LTR MaLR -5 404 63 360 246 59 42 chrX 144925115 144925152 -32048988 - MLT1I LTR MaLR -1 408 373 1954 177 31 6 chrX 144925152 144925508 -32048632 + MLT1A1 LTR MaLR 1 365 0 360 246 59 42 chrX 144925508 144925588 -32048552 - MLT1I LTR MaLR -36 373 289 260 311 149 27 chrX 144925586 144925734 -32048406 - MLT1I LTR MaLR -162 247 82 * 21 36 0 0 chrX 144926496 144926524 -32047616 + AT_rich Low_complexity Low_complexity 1 28 0 279 344 83 17 chrX 144926939 144927180 -32046960 - LTR16C LTR ERVL -3 488 232 699 159 55 22 chrX 144927269 144927451 -32046689 + MER53 DNA DNA 2 189 0 340 297 72 9 chrX 144927823 144927934 -32046206 + L2 LINE L2 3149 3266 -6 192 311 89 0 chrX 144928282 144928372 -32045768 + MIR SINE MIR 114 211 -51 1402 236 79 58 chrX 144928450 144928531 -32045609 + MLT1E2 LTR MaLR 1 79 -547 1537 201 94 27 chrX 144928531 144928969 -32045171 + MLT1C LTR MaLR 1 467 0 1402 236 79 58 chrX 144928969 144929442 -32044698 + MLT1E2 LTR MaLR 79 567 -59 1009 64 58 6 chrX 144929445 144929601 -32044539 - L1MB3 LINE L1 -1 6182 6019 1746 126 23 80 chrX 144929601 144929653 -32044487 - THE1C LTR MaLR 0 375 322 2622 84 28 11 chrX 144929653 144930011 -32044129 - THE1B LTR MaLR 0 364 1 1746 126 23 80 chrX 144930011 144930356 -32043784 - THE1C LTR MaLR -53 322 1 705 160 90 0 chrX 144930356 144930512 -32043628 - L1MB3 LINE L1 -160 6023 5854 430 277 67 39 chrX 144930951 144931236 -32042904 + LTR16C LTR ERVL 197 489 -2 2252 76 4 0 chrX 144931672 144931974 -32042166 + AluSp SINE Alu 5 307 0 306 0 0 0 chrX 144932917 144932951 -32041189 + (TG)n Simple_repeat Simple_repeat 2 35 0 1955 119 3 52 chrX 144932970 144933280 -32040860 + AluSq SINE Alu 1 295 -18 264 325 13 25 chrX 144933965 144934122 -32040018 + GA-rich Low_complexity Low_complexity 1 155 0 4323 195 39 2 chrX 144934168 144935147 -32038993 + L1MB3 LINE L1 5167 6181 -2 228 135 0 0 chrX 144936057 144936094 -32038046 + (TG)n Simple_repeat Simple_repeat 2 38 0 556 208 16 55 chrX 144937661 144937844 -32036296 + MER5B DNA MER1_type 1 176 -2 225 0 0 0 chrX 144937985 144938010 -32036130 + (T)n Simple_repeat Simple_repeat 1 25 0 1463 160 125 18 chrX 144938452 144938789 -32035351 - THE1C LTR MaLR -1 374 2 337 293 19 9 chrX 144939241 144939347 -32034793 - L2 LINE L2 -652 2662 2556 340 127 14 14 chrX 144939535 144939606 -32034534 - MER53 DNA DNA -3 186 116 271 143 14 29 chrX 144939544 144939614 -32034526 + MER53 DNA DNA 23 91 -98 * 2287 60 3 3 chrX 144940358 144940689 -32033451 + AluY SINE Alu 1 331 0 846 215 9 40 chrX 144941251 144941474 -32032666 - MER58A DNA MER1_type 0 224 9 330 216 0 0 chrX 144942453 144942527 -32031613 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 219 269 142 17 chrX 144942684 144942812 -32031328 + MIR SINE MIR 19 156 -52 246 371 72 0 chrX 144942885 144942982 -32031158 - L2 LINE L2 -21 3251 3148 429 242 15 53 chrX 144943008 144943140 -32031000 + MER34 LTR ERV1 1 127 -415 438 242 37 50 chrX 144943206 144943367 -32030773 + LTR48 LTR ERV1 323 481 -306 344 229 49 39 chrX 144943398 144943577 -32030563 + MER34 LTR ERV1 445 542 0 7312 163 113 172 chrX 144943734 144944415 -32029725 - Tigger1 DNA MER2_type -3 2415 1695 2320 117 0 0 chrX 144944415 144944724 -32029416 - AluSg SINE Alu -1 309 1 7312 163 113 172 chrX 144944724 144944944 -32029196 - Tigger1 DNA MER2_type -723 1695 1463 8848 175 29 6 chrX 144944944 144946392 -32027748 + MSTA-int LTR MaLR 2 1492 -159 378 0 0 0 chrX 144946392 144946434 -32027706 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 8848 175 29 6 chrX 144946434 144946598 -32027542 + MSTA-int LTR MaLR 1492 1651 0 2206 140 83 10 chrX 144946598 144946997 -32027143 + MSTA LTR MaLR 1 428 0 7312 163 113 172 chrX 144946997 144948009 -32026131 - Tigger1 DNA MER2_type -954 1464 393 1710 207 92 5 chrX 144948009 144948400 -32025740 - MSTA LTR MaLR 0 428 4 8618 183 20 14 chrX 144948403 144950044 -32024096 - MSTA-int LTR MaLR 0 1651 1 1881 191 81 2 chrX 144950044 144950441 -32023699 - MSTA LTR MaLR 0 428 1 7312 163 113 172 chrX 144950441 144950605 -32023535 - Tigger1 DNA MER2_type -2026 392 220 3782 144 19 49 chrX 144950605 144951343 -32022797 + L1PA15 LINE L1 5450 6165 0 7312 163 113 172 chrX 144951343 144951601 -32022539 - Tigger1 DNA MER2_type -2198 220 235 2089 120 7 3 chrX 144951601 144951902 -32022238 + AluSx SINE Alu 1 302 -10 7312 163 113 172 chrX 144951902 144952125 -32022015 - Tigger1 DNA MER2_type -2182 236 1 231 349 39 8 chrX 144952163 144952292 -32021848 - L2 LINE L2 -314 2958 2826 1610 172 18 7 chrX 144953650 144953923 -32020217 - AluJo SINE Alu -17 295 20 2184 120 0 3 chrX 144953988 144954287 -32019853 + AluSx SINE Alu 1 298 -14 2268 96 0 0 chrX 144955178 144955479 -32018661 - AluSq SINE Alu -12 301 1 2089 133 0 3 chrX 144955722 144956023 -32018117 - AluSx SINE Alu -12 300 1 476 298 31 31 chrX 144956108 144956457 -32017683 + L1M4 LINE L1 2482 2830 -3316 281 211 211 18 chrX 144956532 144956646 -32017494 - L2 LINE L2 -28 3285 3150 351 199 128 102 chrX 144956742 144956877 -32017263 + L1MC4 LINE L1 7810 7955 -87 1834 144 26 33 chrX 144956877 144957183 -32016957 + AluJb SINE Alu 1 304 -8 351 199 128 102 chrX 144957183 144957273 -32016867 + L1MC4 LINE L1 7955 8041 -1 2146 115 3 0 chrX 144957388 144957713 -32016427 - AluSx SINE Alu 0 312 1 292 244 59 34 chrX 144958449 144958568 -32015572 + MLT1J2 LTR MaLR 35 156 -294 1116 334 56 32 chrX 144959060 144959707 -32014433 - L2 LINE L2 -7 3306 2676 1974 144 36 28 chrX 144959707 144960068 -32014072 - THE1B LTR MaLR 0 364 1 10996 116 7 2 chrX 144960068 144961641 -32012499 - THE1B-int LTR MaLR 0 1580 1 1980 139 44 33 chrX 144961641 144962001 -32012139 - THE1B LTR MaLR 0 364 1 1116 334 56 32 chrX 144962001 144962261 -32011879 - L2 LINE L2 -636 2677 2380 192 158 0 0 chrX 144962388 144962426 -32011714 + (TG)n Simple_repeat Simple_repeat 1 38 0 308 247 0 12 chrX 144962551 144962632 -32011508 + MLT1E1 LTR MaLR 73 152 -502 255 216 68 57 chrX 144963102 144963190 -32010950 - L3 LINE CR1 -897 680 592 5312 149 31 30 chrX 144963422 144964379 -32009761 - L1MA4A LINE L1 -4 7361 6406 1333 203 38 38 chrX 144964379 144964670 -32009470 - AluJb SINE Alu -21 291 1 5312 149 31 30 chrX 144964670 144964932 -32009208 - L1MA4A LINE L1 -959 6406 6146 2419 72 0 10 chrX 144964932 144965238 -32008902 - AluY SINE Alu -8 303 1 5312 149 31 30 chrX 144965238 144965795 -32008345 - L1MA4A LINE L1 -1219 6146 5569 22 35 0 0 chrX 144966110 144966139 -32008001 + AT_rich Low_complexity Low_complexity 1 29 0 7932 11 0 0 chrX 144966217 144967175 -32006965 - L1PA2 LINE L1 0 6155 5198 4320 26 0 0 chrX 144967175 144967710 -32006430 + L1PA2 LINE L1 4668 5202 -944 3858 202 45 8 chrX 144967702 144968651 -32005489 - L1MA4A LINE L1 -1622 5586 4603 * 3185 239 57 23 chrX 144968676 144969709 -32004431 - L1MA4A LINE L1 -5830 1379 1 4633 241 57 22 chrX 144969713 144970329 -32003811 - L1M4 LINE L1 -984 5162 4569 3076 186 9 2 chrX 144970329 144970882 -32003258 + MER41D LTR ERV1 1 557 0 4633 241 57 22 chrX 144970882 144971001 -32003139 - L1M4 LINE L1 -1577 4569 4456 778 273 0 0 chrX 144971001 144971166 -32002974 - FAM SINE Alu -10 165 1 4633 241 57 22 chrX 144971166 144972051 -32002089 - L1M4 LINE L1 -1690 4456 3483 4930 186 23 9 chrX 144972052 144973602 -32000538 + L1PA13 LINE L1 4147 5719 -442 461 171 0 0 chrX 144973674 144973756 -32000384 + L1PA13 LINE L1 5701 5782 -379 35975 87 4 10 chrX 144973766 144978632 -31995508 + L1PA6 LINE L1 11 4835 -1319 2372 47 0 23 chrX 144978632 144978933 -31995207 - AluY SINE Alu -17 294 1 35975 87 4 10 chrX 144978933 144980246 -31993894 + L1PA6 LINE L1 4835 6154 0 1264 122 19 5 chrX 144980238 144980451 -31993689 + L1PA13 LINE L1 5769 5984 -179 * 302 222 0 81 chrX 144980461 144980560 -31993580 + L1MC4 LINE L1 6613 6703 -1339 327 192 0 0 chrX 144980565 144980643 -31993497 + (TA)n Simple_repeat Simple_repeat 1 78 0 4695 144 68 47 chrX 144980643 144981961 -31992179 - L1MCa LINE L1 -3921 2505 1052 2019 187 59 10 chrX 144981961 144982367 -31991773 - MSTB LTR MaLR 0 426 1 4695 144 68 47 chrX 144982367 144982770 -31991370 - L1MCa LINE L1 -5374 1052 659 422 264 69 19 chrX 144982874 144983075 -31991065 - MER8 DNA MER2_type 0 345 2 292 244 119 12 chrX 144983610 144983778 -31990362 - HAL1 LINE L1 -12 2495 2310 452 120 76 0 chrX 144983957 144984049 -31990091 - L1PB1 LINE L1 0 6151 6053 2770 183 61 5 chrX 144984146 144984703 -31989437 - L1MCa LINE L1 -5816 610 23 367 284 30 30 chrX 144984813 144984947 -31989193 - MIR SINE MIR -122 140 7 2312 215 97 3 chrX 144985136 144985726 -31988414 + MLT1E1 LTR MaLR 10 654 0 1126 204 125 74 chrX 144985770 144986058 -31988082 - MSTD LTR MaLR 0 396 83 798 215 0 51 chrX 144986058 144986216 -31987924 + FRAM SINE Alu 1 150 -16 1126 204 125 74 chrX 144986216 144986304 -31987836 - MSTD LTR MaLR -313 83 1 184 394 31 8 chrX 144986345 144986472 -31987668 - L2 LINE L2 -228 3044 2915 2157 127 0 3 chrX 144987087 144987387 -31986753 + AluSx SINE Alu 1 299 -13 3402 190 132 47 chrX 144987401 144988710 -31985430 - L1MB7 LINE L1 -17 6167 4727 918 246 0 0 chrX 144988710 144988885 -31985255 - FAM SINE Alu 0 175 1 3402 190 132 47 chrX 144988885 144988996 -31985144 - L1MB7 LINE L1 -1457 4727 4627 405 231 28 46 chrX 144989238 144989264 -31984876 - MER5A DNA MER1_type -80 109 84 1863 151 38 24 chrX 144989264 144989634 -31984506 - THE1C LTR MaLR 0 375 1 405 231 28 46 chrX 144989634 144989715 -31984425 - MER5A DNA MER1_type -105 84 4 185 94 31 0 chrX 144989799 144989831 -31984309 + A-rich Low_complexity Low_complexity 4 36 0 250 306 0 14 chrX 144989839 144989911 -31984229 - MIR SINE MIR -94 114 44 531 83 0 0 chrX 144990265 144990337 -31983803 + MSTB1 LTR MaLR 4 75 -357 2227 148 32 19 chrX 144990447 144990858 -31983282 - MSTB1 LTR MaLR -16 416 1 543 223 171 32 chrX 144990911 144991385 -31982755 + MLT1E3 LTR MaLR 1 619 -5 438 224 49 49 chrX 144991606 144991789 -31982351 - L1ME4a LINE L1 0 6121 5939 2594 195 54 6 chrX 144991988 144992522 -31981618 - MER68 LTR ERV1 -2 560 1 2134 109 3 0 chrX 144992901 144993194 -31980946 + AluSp SINE Alu 1 294 -19 446 296 40 33 chrX 144993628 144993780 -31980360 - MER91A DNA MER1_type -38 158 6 406 229 57 33 chrX 144994137 144994259 -31979881 + MIR SINE MIR 67 191 -71 333 198 161 0 chrX 144995754 144995835 -31978305 + MIR SINE MIR 169 262 0 235 351 18 73 chrX 144996160 144996325 -31977815 + L2 LINE L2 3116 3271 -1 189 368 15 15 chrX 144997192 144997260 -31976880 - MIR3 SINE MIR -126 82 15 1340 217 44 28 chrX 144997355 144997673 -31976467 + MER58B DNA MER1_type 2 324 -17 393 305 159 0 chrX 144997706 144997857 -31976283 + MER5A DNA MER1_type 9 183 -6 228 246 72 0 chrX 144997983 144998052 -31976088 + MIR SINE MIR 117 190 -72 467 241 26 0 chrX 144998053 144998169 -31975971 - MLT1C LTR MaLR 0 467 349 741 186 123 43 chrX 144998380 144998633 -31975507 - MLT1C LTR MaLR -142 325 53 584 289 30 6 chrX 145000022 145000188 -31973952 - MER5B DNA MER1_type -2 176 7 344 265 18 118 chrX 145000398 145000568 -31973572 + L2 LINE L2 3159 3311 -2 2219 113 0 0 chrX 145000843 145001152 -31972988 - AluSx SINE Alu -3 309 1 1017 283 123 30 chrX 145001667 145002196 -31971944 + L2 LINE L2 2742 3313 0 983 280 65 7 chrX 145003030 145003323 -31970817 + MLT1E3 LTR MaLR 315 624 0 1078 225 59 11 chrX 145003323 145003743 -31970397 + MLT1E3-int LTR MaLR 1 548 -823 1698 317 204 14 chrX 145003747 145004956 -31969184 + L2 LINE L2 1611 3047 -225 436 328 82 0 chrX 145005164 145005286 -31968854 + L2 LINE L2 3134 3265 -7 2003 303 11 42 chrX 145005438 145006267 -31967873 + L1M3c LINE L1 5 807 -5334 434 163 0 0 chrX 145006320 145006412 -31967728 + L1 LINE L1 3641 3732 -2414 * 1018 192 15 15 chrX 145006383 145006643 -31967497 + L1MA4 LINE L1 6037 6296 -4 * 5575 189 20 18 chrX 145006639 145007967 -31966173 + L1 LINE L1 3730 5060 -1086 330 45 0 0 chrX 145008080 145008124 -31966016 + (TG)n Simple_repeat Simple_repeat 2 45 0 314 361 6 0 chrX 145009016 145009174 -31964966 + CT-rich Low_complexity Low_complexity 2 160 0 3348 147 71 26 chrX 145010109 145010204 -31963936 - L1PA16 LINE L1 0 6166 6077 2143 111 47 42 chrX 145010204 145010565 -31963575 + THE1B LTR MaLR 1 363 -1 3348 147 71 26 chrX 145010565 145011130 -31963010 - L1PA16 LINE L1 -89 6077 5476 207 0 0 0 chrX 145011170 145011193 -31962947 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2511 61 0 10 chrX 145011193 145011503 -31962637 - AluY SINE Alu -3 308 2 4875 171 32 5 chrX 145012402 145013903 -31960237 - L1PA16 LINE L1 -25 6141 4616 4969 126 53 144 chrX 145014358 145015002 -31959138 - Tigger3b DNA MER2_type -1803 1225 524 2229 102 0 23 chrX 145015002 145015305 -31958835 + AluSc SINE Alu 1 296 -13 4969 126 53 144 chrX 145015305 145015795 -31958345 - Tigger3b DNA MER2_type -2504 524 231 2160 94 13 27 chrX 145015795 145016094 -31958046 - AluSp SINE Alu -18 295 1 4969 126 53 144 chrX 145016094 145016306 -31957834 - Tigger3b DNA MER2_type -2797 231 1 2312 82 0 0 chrX 145017776 145018068 -31956072 + AluY SINE Alu 20 311 0 30 45 0 0 chrX 145019895 145019939 -31954201 + AT_rich Low_complexity Low_complexity 1 44 0 11890 138 42 15 chrX 145020234 145022415 -31951725 - Tigger1 DNA MER2_type -1 2417 178 2236 154 24 0 chrX 145022526 145022936 -31951204 + LTR45B LTR ERV1 29 448 -41 21 36 0 0 chrX 145023421 145023449 -31950691 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 145023480 145023508 -31950632 + AT_rich Low_complexity Low_complexity 1 28 0 2016 127 20 0 chrX 145023795 145024087 -31950053 - AluSq SINE Alu -15 298 1 403 305 23 12 chrX 145026386 145026642 -31947498 - L1M4 LINE L1 -2023 4123 3865 290 305 108 5 chrX 145026652 145026875 -31947265 - L1MEc LINE L1 -6116 280 35 2324 81 3 10 chrX 145027305 145027612 -31946528 - AluY SINE Alu -6 305 1 2844 10 0 0 chrX 145030064 145030372 -31943768 + AluYa5 SINE Alu 1 308 -3 2680 91 11 16 chrX 145034723 145035098 -31939042 + THE1C LTR MaLR 1 373 -2 281 47 23 0 chrX 145036614 145036657 -31937483 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chrX 145036962 145036985 -31937155 + AT_rich Low_complexity Low_complexity 1 23 0 390 311 68 9 chrX 145037071 145037293 -31936847 + L1MEc LINE L1 44 278 -6118 289 323 0 0 chrX 145037418 145037517 -31936623 + L1 LINE L1 4019 4117 -2029 3069 98 144 16 chrX 145037819 145038380 -31935760 + LTR10E LTR ERV1 1 633 0 407 159 0 11 chrX 145038697 145038785 -31935355 + L1MA6 LINE L1 6214 6300 0 29 28 0 0 chrX 145038786 145038822 -31935318 + AT_rich Low_complexity Low_complexity 1 36 0 13098 165 48 17 chrX 145038828 145039461 -31934679 + L1PBa LINE L1 2 614 -6249 2233 104 3 28 chrX 145039461 145039779 -31934361 - AluSg SINE Alu 0 310 1 2338 121 0 0 chrX 145039779 145040084 -31934056 - AluSx SINE Alu -7 305 1 13098 165 48 17 chrX 145040084 145042107 -31932033 + L1PBa LINE L1 613 2743 -4120 2233 119 3 0 chrX 145042206 145042516 -31931624 - AluSq SINE Alu -2 311 1 502 255 44 28 chrX 145044731 145044982 -31929158 + L1 LINE L1 3863 4117 -2029 1543 186 53 0 chrX 145047389 145047674 -31926466 + AluSq SINE Alu 1 300 -13 1460 166 87 0 chrX 145047704 145047981 -31926159 - MER101 LTR ERV1 -150 324 24 9679 224 29 2 chrX 145048933 145051517 -31922623 + L1M2 LINE L1 2799 5450 -1398 1105 101 6 0 chrX 145051517 145051675 -31922465 + L1PB2 LINE L1 5991 6149 -2 287 254 0 17 chrX 145052647 145052765 -31921375 + GA-rich Low_complexity Low_complexity 2 117 0 2037 130 17 6 chrX 145052817 145053164 -31920976 - L1PB1 LINE L1 0 6151 5801 569 119 0 9 chrX 145053164 145053273 -31920867 + L1 LINE L1 4620 4727 -1419 21 36 0 0 chrX 145053512 145053540 -31920600 + AT_rich Low_complexity Low_complexity 1 28 0 1818 160 36 39 chrX 145053909 145054241 -31919899 + MER1B DNA MER1_type 2 332 -7 540 301 173 17 chrX 145054872 145055430 -31918710 + L2 LINE L2 2665 3303 -10 1947 135 75 35 chrX 145055731 145056078 -31918062 + THE1B LTR MaLR 1 361 -3 11439 91 14 2 chrX 145056081 145057642 -31916498 + THE1B-int LTR MaLR 1 1580 0 2093 123 71 31 chrX 145057642 145057992 -31916148 + THE1B LTR MaLR 1 364 0 4532 213 5 7 chrX 145058350 145059427 -31914713 + L1P LINE L1 3821 4895 -1251 321 231 32 20 chrX 145059986 145060242 -31913898 + GA-rich Low_complexity Low_complexity 1 259 0 243 226 0 48 chrX 145060273 145060419 -31913721 + GA-rich Low_complexity Low_complexity 5 143 0 226 127 0 55 chrX 145060618 145060673 -31913467 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 2282 82 0 10 chrX 145060699 145061048 -31913092 + AluY SINE Alu 1 311 0 221 83 28 0 chrX 145061270 145061306 -31912834 + (TA)n Simple_repeat Simple_repeat 2 38 0 404 239 254 0 chrX 145062351 145062489 -31911651 - MER5A DNA MER1_type -6 183 11 1108 165 0 5 chrX 145062506 145062706 -31911434 + MER3 DNA MER1_type 5 203 -6 1049 221 9 9 chrX 145062730 145062947 -31911193 - MER58A DNA MER1_type -7 217 1 333 0 0 0 chrX 145063207 145063244 -31910896 + (CA)n Simple_repeat Simple_repeat 1 37 0 257 107 0 54 chrX 145064656 145064712 -31909428 + (T)n Simple_repeat Simple_repeat 1 53 0 3732 23 0 2 chrX 145064714 145065152 -31908988 - L1PA4 LINE L1 -3 6152 5716 2009 125 4 4 chrX 145065856 145066136 -31908004 + AluSx SINE Alu 1 280 -32 21 0 0 0 chrX 145066145 145066166 -31907974 + AT_rich Low_complexity Low_complexity 1 21 0 224 330 87 10 chrX 145066184 145066287 -31907853 - L2 LINE L2 0 3272 3162 688 239 65 57 chrX 145066838 145067068 -31907072 - MIR SINE MIR 0 262 31 732 224 298 15 chrX 145067566 145067643 -31906497 - LTR52 LTR ERVL -3 418 364 477 0 0 0 chrX 145067643 145067696 -31906444 + (CA)n Simple_repeat Simple_repeat 1 53 0 732 224 298 15 chrX 145067696 145067944 -31906196 - LTR52 LTR ERVL -57 364 1 377 114 100 0 chrX 145068532 145068602 -31905538 + L1MC1 LINE L1 6116 6192 -141 36327 81 7 12 chrX 145068868 145075036 -31899104 - L1PA6 LINE L1 -2 6152 11 2182 121 10 0 chrX 145075131 145075438 -31898702 + AluSg SINE Alu 1 310 0 297 213 0 0 chrX 145075453 145075514 -31898626 + MIR SINE MIR 69 129 -133 556 291 30 15 chrX 145076104 145076307 -31897833 + LTR16B LTR ERVL 257 462 -2 183 293 0 0 chrX 145076312 145076353 -31897787 - MIR SINE MIR -135 73 33 433 120 71 16 chrX 145076374 145076688 -31897452 + (TA)n Simple_repeat Simple_repeat 1 331 0 190 220 0 60 chrX 145077328 145077378 -31896762 - L2 LINE L2 -12 3301 3255 239 174 203 0 chrX 145078006 145078075 -31896065 + MIR3 SINE MIR 121 203 -5 255 313 12 0 chrX 145078654 145078737 -31895403 - MIR3 SINE MIR -1 207 124 626 237 0 26 chrX 145079730 145079886 -31894254 - MLT1B LTR MaLR -6 384 233 387 113 0 0 chrX 145079918 145079980 -31894160 + (GA)n Simple_repeat Simple_repeat 2 63 0 484 185 82 82 chrX 145079998 145080182 -31893958 - MLT1B LTR MaLR -206 184 1 690 220 25 13 chrX 145081375 145081534 -31892606 - MER58B DNA MER1_type -8 333 173 2730 121 35 2 chrX 145081554 145081985 -31892155 - L1PA16 LINE L1 -9 6157 5713 18065 190 33 11 chrX 145082290 145086522 -31887618 + L1M1 LINE L1 12 4347 -3218 2756 16 0 0 chrX 145086522 145086830 -31887310 + AluYa5 SINE Alu 1 308 -3 18065 190 33 11 chrX 145086830 145087415 -31886725 + L1M1 LINE L1 4347 4918 -2647 3295 196 14 55 chrX 145087521 145088379 -31885761 + L1M1 LINE L1 4846 5668 -1897 1621 148 39 39 chrX 145088415 145088779 -31885361 + THE1C LTR MaLR 12 375 0 4032 185 10 55 chrX 145088779 145089826 -31884314 + L1M1 LINE L1 5664 6662 -903 713 232 18 0 chrX 145089827 145089995 -31884145 + MLT2B3 LTR ERVL 2 172 -382 2092 140 16 35 chrX 145090643 145091014 -31883126 + THE1B LTR MaLR 1 364 0 320 184 26 9 chrX 145091390 145091504 -31882636 + (TA)n Simple_repeat Simple_repeat 1 116 0 587 230 197 5 chrX 145091821 145092034 -31882106 - L2 LINE L2 -1052 2262 2009 2072 120 64 19 chrX 145092335 145092694 -31881446 + THE1C LTR MaLR 1 375 0 10156 120 36 3 chrX 145092694 145094224 -31879916 + THE1C-int LTR MaLR 1 1580 0 1871 141 69 30 chrX 145094224 145094585 -31879555 + THE1C LTR MaLR 1 375 0 213 254 0 30 chrX 145094586 145094653 -31879487 + (CATA)n Simple_repeat Simple_repeat 2 66 0 642 210 17 17 chrX 145094684 145094860 -31879280 + MER96B DNA MER1_type? 209 384 -33 825 227 0 11 chrX 145094898 145095083 -31879057 - L2 LINE L2 -1300 2014 1832 1103 231 78 61 chrX 145095085 145095497 -31878643 - MER74B LTR ERVL 0 622 204 232 226 0 0 chrX 145095574 145095627 -31878513 - MER74B LTR ERVL -569 53 1 1085 90 0 0 chrX 145096281 145096415 -31877725 + AluY SINE Alu 1 134 -177 1869 159 0 0 chrX 145096415 145096710 -31877430 + AluY SINE Alu 1 295 -16 1436 191 168 0 chrX 145097048 145097357 -31876783 - MLT1A1 LTR MaLR 0 365 5 250 329 51 9 chrX 145098171 145098316 -31875824 - MIR SINE MIR -33 175 23 2169 153 35 28 chrX 145098494 145098919 -31875221 - MSTA LTR MaLR 0 428 1 214 162 0 0 chrX 145099157 145099194 -31874946 + (TG)n Simple_repeat Simple_repeat 2 38 0 576 237 160 19 chrX 145099650 145099806 -31874334 + MER5A DNA MER1_type 4 181 -8 221 0 0 33 chrX 145100378 145100408 -31873732 + (TTG)n Simple_repeat Simple_repeat 2 30 0 481 298 103 20 chrX 145100484 145100786 -31873354 - HAL1 LINE L1 -587 1920 1594 541 250 141 5 chrX 145100787 145100971 -31873169 + MLT1J LTR MaLR 3 211 -300 336 230 119 8 chrX 145101050 145101176 -31872964 + MLT1J LTR MaLR 341 480 -31 324 329 63 7 chrX 145101203 145101346 -31872794 - HAL1 LINE L1 -907 1600 1450 353 269 31 62 chrX 145101405 145101598 -31872542 - HAL1 LINE L1 -1123 1384 1198 332 189 75 101 chrX 145101606 145101765 -31872375 - HAL1 LINE L1 -1360 1147 993 1195 188 74 139 chrX 145101775 145101791 -31872349 - MLT1F1 LTR MaLR 0 654 639 2304 160 10 2 chrX 145101791 145102191 -31871949 - MER57A LTR ERV1 0 403 1 1195 188 74 139 chrX 145102191 145102778 -31871362 - MLT1F1 LTR MaLR -15 639 6 351 331 63 97 chrX 145102781 145103255 -31870885 - HAL1 LINE L1 -1521 986 529 5359 224 22 25 chrX 145104178 145106398 -31867742 + L1MB2 LINE L1 3 1644 -5219 3506 185 18 56 chrX 145106868 145107105 -31867035 + L1MB2 LINE L1 5826 6071 -816 950 209 18 103 chrX 145107105 145107502 -31866638 + MLT1A1 LTR MaLR 3 365 0 3506 185 18 56 chrX 145107502 145108193 -31865947 + L1MB2 LINE L1 6071 6719 -168 2364 81 0 3 chrX 145108193 145108501 -31865639 + AluY SINE Alu 1 307 -4 3506 185 18 56 chrX 145108501 145108609 -31865531 + L1MB2 LINE L1 6719 6830 -57 337 279 36 0 chrX 145108615 145108726 -31865414 - L1M4 LINE L1 -2927 3455 3341 2210 59 0 10 chrX 145108926 145109216 -31864924 - AluY SINE Alu -24 287 1 897 172 0 0 chrX 145109447 145109627 -31864513 + (TG)n Simple_repeat Simple_repeat 1 180 0 1419 203 25 37 chrX 145109815 145110223 -31863917 - L1M4 LINE L1 -4645 1739 1337 7360 40 0 1 chrX 145110228 145111324 -31862816 + L1PA4 LINE L1 5058 6152 -3 1742 151 12 27 chrX 145111333 145111671 -31862469 + L1MA4 LINE L1 5959 6291 -9 399 250 137 12 chrX 145111691 145111859 -31862281 - MLT1E LTR MaLR -454 139 1 21 71 0 0 chrX 145112664 145112706 -31861434 + AT_rich Low_complexity Low_complexity 1 42 0 289 353 25 8 chrX 145113037 145113159 -31860981 + MIR SINE MIR 31 154 -108 300 316 34 8 chrX 145113264 145113381 -31860759 + MIR SINE MIR 143 262 0 827 90 0 28 chrX 145113771 145113915 -31860225 + (TTC)n Simple_repeat Simple_repeat 2 141 0 635 211 0 39 chrX 145114050 145114206 -31859934 + L1 LINE L1 3938 4087 -2059 1099 168 45 45 chrX 145114365 145114656 -31859484 + L1 LINE L1 2357 2647 -3499 1973 148 19 40 chrX 145114658 145115030 -31859110 - MLT1A1 LTR MaLR -1 364 1 1138 244 45 3 chrX 145115369 145115656 -31858484 + MLT1A1 LTR MaLR 1 299 -66 824 254 19 75 chrX 145115658 145116032 -31858108 + L1ME3 LINE L1 5807 6159 -3 371 279 72 85 chrX 145116980 145117032 -31857108 - L2 LINE L2 -365 2949 2898 2218 123 0 22 chrX 145117032 145117349 -31856791 + AluSx SINE Alu 1 310 -2 371 279 72 85 chrX 145117349 145117672 -31856468 - L2 LINE L2 -416 2898 2579 291 139 0 56 chrX 145119232 145119304 -31854836 - MLT2B1 LTR ERVL -4 516 449 240 35 0 0 chrX 145119305 145119380 -31854760 + (GA)n Simple_repeat Simple_repeat 1 104 0 240 35 0 0 chrX 145119380 145119409 -31854731 + (GA)n Simple_repeat Simple_repeat 2 30 0 1559 243 55 21 chrX 145119436 145119905 -31854235 - MLT2B1 LTR ERVL -35 485 1 1503 160 6 118 chrX 145120199 145120531 -31853609 - AluJb SINE Alu -3 299 5 553 228 116 37 chrX 145120537 145120726 -31853414 - MIR SINE MIR -46 216 13 209 317 37 0 chrX 145121423 145121505 -31852635 - MIR3 SINE MIR -17 191 107 1701 206 57 36 chrX 145121894 145122335 -31851805 + MLT1D LTR MaLR 56 505 0 355 283 22 0 chrX 145123127 145123219 -31850921 + MER5A DNA MER1_type 13 106 -83 414 345 21 7 chrX 145123238 145123383 -31850757 - MIR3 SINE MIR -21 187 41 471 254 18 9 chrX 145123998 145124112 -31850028 - MIR SINE MIR -128 134 20 297 295 171 19 chrX 145124539 145124644 -31849496 + MIR SINE MIR 18 138 -70 209 338 110 19 chrX 145124725 145124879 -31849261 + L2 LINE L2 3125 3292 -21 188 326 37 37 chrX 145125370 145125505 -31848635 - L2 LINE L2 0 3272 3138 1116 243 56 85 chrX 145126365 145126894 -31847246 - MLT1E LTR MaLR 0 593 150 571 162 0 0 chrX 145126896 145126995 -31847145 + L1MA4 LINE L1 5879 5977 -323 * 961 74 30 0 chrX 145126979 145127114 -31847026 - L1PA4 LINE L1 -280 5874 5736 2498 39 13 0 chrX 145127114 145127408 -31846732 + L1PA4 LINE L1 5843 6155 0 4189 98 97 5 chrX 145127427 145128199 -31845941 + L1PBa LINE L1 1898 2740 -4123 827 230 87 0 chrX 145128445 145128710 -31845430 + MER33 DNA MER1_type 35 322 -2 1960 130 143 29 chrX 145128938 145129322 -31844818 - MSTA LTR MaLR 0 428 1 183 316 0 76 chrX 145129391 145129470 -31844670 + L2 LINE L2 3191 3263 -9 26 0 0 0 chrX 145129694 145129720 -31844420 + AT_rich Low_complexity Low_complexity 1 26 0 983 250 52 9 chrX 145129741 145130069 -31844071 - L1P LINE L1 -1696 4450 4109 425 335 0 0 chrX 145130127 145130291 -31843849 + T-rich Low_complexity Low_complexity 1 164 0 389 306 6 29 chrX 145130248 145130421 -31843719 + CT-rich Low_complexity Low_complexity 2 170 0 * 180 97 0 0 chrX 145131800 145131831 -31842309 + (A)n Simple_repeat Simple_repeat 1 31 0 1963 101 66 0 chrX 145131837 145132124 -31842016 + AluSc SINE Alu 1 306 -3 614 253 80 0 chrX 145133392 145133554 -31840586 - MER96 DNA MER1_type 0 175 1 430 152 22 0 chrX 145134678 145134770 -31839370 + CT-rich Low_complexity Low_complexity 1 94 0 493 246 18 64 chrX 145134794 145134965 -31839175 + MIR SINE MIR 5 167 -95 624 255 66 33 chrX 145135079 145135291 -31838849 - MIR SINE MIR -12 250 32 281 245 143 31 chrX 145135298 145135396 -31838744 - MIR SINE MIR -98 164 56 2324 109 37 100 chrX 145135853 145136312 -31837828 - MSTB1 LTR MaLR -1 431 2 202 222 256 11 chrX 145137023 145137113 -31837027 + MIR SINE MIR 147 258 -4 1709 59 0 22 chrX 145137866 145138088 -31836052 + AluSg/x SINE Alu 96 312 0 505 331 32 16 chrX 145138293 145138618 -31835522 + MLT1I LTR MaLR 68 450 0 660 305 30 9 chrX 145138620 145138976 -31835164 - L1MC/D LINE L1 -313 5808 5446 22 35 0 0 chrX 145139350 145139379 -31834761 + AT_rich Low_complexity Low_complexity 1 29 0 226 209 0 0 chrX 145139571 145139614 -31834526 + GA-rich Low_complexity Low_complexity 4 46 0 1315 190 63 157 chrX 145140825 145141398 -31832742 + MLT2B1 LTR ERVL 1 519 -1 272 208 0 158 chrX 145141835 145141893 -31832247 + L1MD1 LINE L1 6130 6161 -81 2208 106 0 3 chrX 145141893 145142186 -31831954 - AluSx SINE Alu -18 294 3 272 208 0 158 chrX 145142186 145142247 -31831893 + L1MD1 LINE L1 6161 6230 -12 206 240 27 67 chrX 145142986 145143061 -31831079 - L2 LINE L2 -106 3207 3136 532 324 131 10 chrX 145143177 145143468 -31830672 - L2 LINE L2 -279 3034 2712 897 232 29 33 chrX 145143626 145143867 -31830273 + MIR SINE MIR 19 258 -4 427 328 16 0 chrX 145143983 145144136 -31830004 + MIR SINE MIR 6 164 -58 575 252 29 141 chrX 145144138 145144289 -31829851 - MLT1J LTR MaLR -3 508 342 2107 124 0 10 chrX 145144289 145144595 -31829545 + AluSx SINE Alu 1 303 -9 575 252 29 141 chrX 145144595 145144896 -31829244 - MLT1J LTR MaLR -169 342 107 2910 203 7 3 chrX 145145037 145145613 -31828527 + Tigger7 DNA MER2_type 1 578 -155 861 139 0 86 chrX 145145606 145145664 -31828476 + Tigger7 DNA MER2_type 2372 2433 -154 * 2257 120 7 0 chrX 145145664 145145973 -31828167 - AluSx SINE Alu -1 311 1 861 139 0 86 chrX 145145973 145146123 -31828017 + Tigger7 DNA MER2_type 2433 2562 -25 205 288 0 34 chrX 145146126 145146185 -31827955 + L2 LINE L2 3237 3293 -20 519 113 0 0 chrX 145197572 145197652 -31776488 + (TA)n Simple_repeat Simple_repeat 1 80 0 15616 215 31 8 chrX 145198879 145200431 -31773709 + L1PA16 LINE L1 1 1516 -5353 288 0 0 0 chrX 145200431 145200463 -31773677 + (TAA)n Simple_repeat Simple_repeat 1 32 0 15616 215 31 8 chrX 145200463 145205614 -31768526 + L1PA16 LINE L1 1516 6860 -9 537 237 110 9 chrX 145205821 145206003 -31768137 - MLT1L LTR MaLR -10 605 307 2768 206 48 8 chrX 145206094 145206697 -31767443 - MER50 LTR ERV1 0 734 108 580 255 13 7 chrX 145206709 145206862 -31767278 - MER50 LTR ERV1 -571 163 10 3078 269 57 16 chrX 145207019 145207851 -31766289 + L1MDa LINE L1 14 879 -5661 996 196 13 57 chrX 145207852 145208082 -31766058 + MER92B LTR ERV1 5 224 -412 4754 215 75 2 chrX 145208095 145209349 -31764791 - L1PBa LINE L1 -3789 3073 1722 723 166 22 0 chrX 145209343 145209482 -31764658 - L1 LINE L1 -1782 5385 5244 * 2880 208 19 21 chrX 145209482 145210150 -31763990 + L1 LINE L1 3558 4224 -1922 1340 229 26 25 chrX 145210148 145210649 -31763491 - L1 LINE L1 -4818 2280 1762 * 376 322 64 57 chrX 145210747 145211030 -31763110 - L1MC/D LINE L1 -2195 5613 5329 808 289 85 3 chrX 145211191 145211578 -31762562 - LTR52 LTR ERVL -2 419 1 2128 86 4 0 chrX 145212220 145212549 -31761591 + AluY SINE Alu 1 330 0 1892 97 19 88 chrX 145212985 145213305 -31760835 - AluSq SINE Alu -15 298 1 8143 31 0 0 chrX 145214363 145216103 -31758037 - L1PA3 LINE L1 -1 6154 4415 389 325 53 19 chrX 145216504 145216713 -31757427 - MER102a DNA MER1_type -26 304 89 3599 235 41 25 chrX 145216775 145217655 -31756485 - L1MB7 LINE L1 0 7603 6738 385 75 15 15 chrX 145217655 145217722 -31756418 + (TA)n Simple_repeat Simple_repeat 1 67 0 3599 235 41 25 chrX 145217722 145218617 -31755523 - L1MB7 LINE L1 -865 6738 5523 1693 175 19 82 chrX 145218617 145219029 -31755111 + MLT1B LTR MaLR 5 390 0 3599 235 41 25 chrX 145219029 145219099 -31755041 - L1MB7 LINE L1 -2080 5523 5456 1726 234 36 43 chrX 145219111 145219640 -31754500 - LTR55 LTR ERV -12 536 12 752 211 27 68 chrX 145219728 145220022 -31754118 - L1MB7 LINE L1 -2178 5387 5106 183 80 0 0 chrX 145220025 145220050 -31754090 + (T)n Simple_repeat Simple_repeat 1 25 0 324 70 0 0 chrX 145220185 145220228 -31753912 + (TG)n Simple_repeat Simple_repeat 1 43 0 1017 156 0 0 chrX 145221382 145221662 -31752478 + (CA)n Simple_repeat Simple_repeat 1 280 0 2273 237 38 119 chrX 145221760 145221929 -31752211 - L1MB7 LINE L1 -2450 5115 4934 1852 146 55 25 chrX 145221929 145222292 -31751848 - THE1C LTR MaLR 0 375 2 2273 237 38 119 chrX 145222292 145222967 -31751173 - L1MB7 LINE L1 -2631 4934 4206 189 0 0 0 chrX 145222967 145222988 -31751152 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2273 237 38 119 chrX 145222988 145223121 -31751019 - L1MB7 LINE L1 -3359 4206 4064 1591 202 0 20 chrX 145223121 145223423 -31750717 - AluJo SINE Alu -16 296 1 2273 237 38 119 chrX 145223423 145224570 -31749570 - L1MB7 LINE L1 -3501 4064 3193 30 45 0 0 chrX 145224570 145224614 -31749526 + AT_rich Low_complexity Low_complexity 1 44 0 30 45 0 0 chrX 145224833 145224877 -31749263 + AT_rich Low_complexity Low_complexity 1 44 0 5107 144 25 1 chrX 145224881 145225747 -31748393 - L1MA2 LINE L1 -1 6303 5417 2572 206 14 10 chrX 145225747 145226256 -31747884 - L1MB7 LINE L1 -7036 529 19 463 277 21 14 chrX 145226260 145226401 -31747739 - L1MC1 LINE L1 -6 6327 6186 442 249 49 4 chrX 145226538 145226679 -31747461 - L1M4b LINE L1 -4546 2492 2269 2324 94 34 55 chrX 145226705 145227088 -31747052 - THE1C LTR MaLR 0 375 1 3766 208 40 21 chrX 145227089 145228022 -31746118 - L1PB4 LINE L1 -25 6833 5843 216 0 0 0 chrX 145228022 145228046 -31746094 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3766 208 40 21 chrX 145228046 145228708 -31745432 - L1PB4 LINE L1 -1015 5843 5195 3206 231 27 19 chrX 145228712 145229551 -31744589 - L1PB4 LINE L1 -1918 4930 4085 1219 230 38 24 chrX 145229540 145230206 -31743934 - L1PB4 LINE L1 -3635 3213 2531 * 1898 234 21 43 chrX 145230201 145230858 -31743282 - L1PB4 LINE L1 -4569 2280 1638 487 281 5 42 chrX 145230858 145231075 -31743065 - L1M4b LINE L1 -4731 2228 2020 343 212 61 0 chrX 145231086 145231185 -31742955 - L1MA8 LINE L1 -3 6288 6184 1277 185 14 35 chrX 145231188 145231475 -31742665 + L1MA7 LINE L1 5773 6053 -238 2993 281 54 45 chrX 145231496 145232337 -31741803 - L1M4b LINE L1 -4834 2021 1162 1935 139 77 14 chrX 145232337 145232690 -31741450 - THE1C LTR MaLR 0 375 1 2993 281 54 45 chrX 145232690 145233434 -31740706 - L1M4b LINE L1 -5693 1162 426 6361 199 34 14 chrX 145233683 145234942 -31739198 + L1MA2 LINE L1 6 1290 -6275 14066 192 18 11 chrX 145234949 145235049 -31739091 + L1MA2 LINE L1 3287 3385 -4338 333 0 0 0 chrX 145235049 145235086 -31739054 + (CA)n Simple_repeat Simple_repeat 2 38 0 14066 192 18 11 chrX 145235086 145236147 -31737993 + L1MA2 LINE L1 3385 4437 -3286 2769 88 0 0 chrX 145236147 145236500 -31737640 + THE1A LTR MaLR 1 353 -2 11010 110 3 12 chrX 145236502 145237000 -31737140 + THE1A-int LTR MaLR 1 502 -1078 2245 113 0 13 chrX 145237000 145237311 -31736829 + AluSc SINE Alu 3 309 0 11010 110 3 12 chrX 145237311 145238407 -31735733 + THE1A-int LTR MaLR 502 1580 0 2815 73 0 0 chrX 145238407 145238762 -31735378 + THE1A LTR MaLR 1 355 0 14066 192 18 11 chrX 145238762 145239322 -31734818 + L1MA2 LINE L1 4437 4992 -2731 2271 99 3 0 chrX 145239322 145239614 -31734526 + AluSp SINE Alu 1 293 -20 14066 192 18 11 chrX 145239614 145242284 -31731856 + L1MA2 LINE L1 4992 7723 0 262 347 0 0 chrX 145244475 145244547 -31729593 + L2 LINE L2 3201 3272 0 23 0 0 0 chrX 145244686 145244709 -31729431 + AT_rich Low_complexity Low_complexity 1 23 0 748 300 177 42 chrX 145245235 145245642 -31728498 + LTR16B LTR ERVL 1 462 -2 2280 349 31 18 chrX 145245666 145246513 -31727627 + HERV16 LTR ERVL 21 890 -4106 1513 201 24 46 chrX 145246513 145246886 -31727254 - MLT1A1 LTR MaLR 0 365 1 2280 349 31 18 chrX 145246886 145247249 -31726891 + HERV16 LTR ERVL 890 1247 -3749 1146 322 65 25 chrX 145247613 145248185 -31725955 + HERV16 LTR ERVL 1876 2470 -2526 799 289 45 91 chrX 145248213 145248443 -31725697 + HERV16 LTR ERVL 3237 3476 -1520 1768 203 3 0 chrX 145248443 145248754 -31725386 + AluJo SINE Alu 1 312 0 799 289 45 91 chrX 145248754 145249236 -31724904 + HERV16 LTR ERVL 3476 3916 -1080 1406 275 92 18 chrX 145249239 145249962 -31724178 + L1MCc LINE L1 1137 1806 -5316 306 50 0 0 chrX 145249962 145250002 -31724138 + (CA)n Simple_repeat Simple_repeat 2 41 0 1406 275 92 18 chrX 145250002 145250664 -31723476 + L1MCc LINE L1 1806 2835 -4287 34 79 0 0 chrX 145250668 145250744 -31723396 + AT_rich Low_complexity Low_complexity 1 76 0 383 255 59 44 chrX 145250744 145250835 -31723305 + L1MCc LINE L1 2819 2907 -4215 2103 132 39 36 chrX 145250835 145251198 -31722942 - THE1B LTR MaLR 0 364 1 383 255 59 44 chrX 145251198 145251310 -31722830 + L1MCc LINE L1 2907 3025 -4097 1719 174 17 0 chrX 145251312 145251611 -31722529 + L1PB3 LINE L1 5844 6147 -7 29 0 0 0 chrX 145251611 145251640 -31722500 + AT_rich Low_complexity Low_complexity 1 29 0 2639 280 53 23 chrX 145251665 145252848 -31721292 + L1MCc LINE L1 2978 4196 -2745 402 259 31 56 chrX 145252854 145253016 -31721124 + HERV16 LTR ERVL 4019 4176 -820 300 317 223 31 chrX 145253177 145253631 -31720509 + HERV16 LTR ERVL 4720 5260 -504 995 317 46 40 chrX 145253857 145254311 -31719829 + LTR16B LTR ERVL 1 457 -7 2215 218 66 24 chrX 145254349 145254814 -31719326 + MLT2B1 LTR ERVL 1 490 -30 444 65 39 0 chrX 145254814 145254891 -31719249 + (TCTA)n Simple_repeat Simple_repeat 3 82 0 2215 218 66 24 chrX 145254891 145254924 -31719216 + MLT2B1 LTR ERVL 490 520 0 250 262 33 0 chrX 145254928 145254989 -31719151 + MIR SINE MIR 184 246 -16 509 366 29 80 chrX 145255001 145255351 -31718789 - L2 LINE L2 -6 3266 2935 225 86 57 0 chrX 145255705 145255740 -31718400 - L1M4 LINE L1 -2080 4066 4030 * 1074 284 45 8 chrX 145255733 145256222 -31717918 - L1M4 LINE L1 -3273 2873 2367 34 24 0 0 chrX 145256236 145256277 -31717863 + AT_rich Low_complexity Low_complexity 1 41 0 1880 154 40 27 chrX 145256312 145256682 -31717458 + THE1C LTR MaLR 1 375 0 7008 140 12 8 chrX 145256693 145257775 -31716365 + THE1C-int LTR MaLR 495 1580 0 2129 152 13 19 chrX 145257775 145258150 -31715990 + THE1C LTR MaLR 1 373 -2 13908 184 19 10 chrX 145258152 145259585 -31714555 - L1MA2 LINE L1 -41 7682 6264 2482 60 23 0 chrX 145259585 145259886 -31714254 - AluY SINE Alu -3 308 1 13908 184 19 10 chrX 145259886 145263090 -31711050 - L1MA2 LINE L1 -1459 6264 3001 1411 270 73 16 chrX 145263114 145263987 -31710153 - L1MDa LINE L1 -3631 2909 1989 2326 224 46 52 chrX 145263992 145264572 -31709568 + L1MDa LINE L1 1799 2389 -4332 263 49 24 0 chrX 145264572 145264613 -31709527 + (TA)n Simple_repeat Simple_repeat 1 42 0 2326 224 46 52 chrX 145264613 145265064 -31709076 + L1MD2 LINE L1 2389 2841 -3880 556 214 73 24 chrX 145265081 145265287 -31708853 + L1MD2 LINE L1 2896 3111 -3429 1574 249 105 63 chrX 145265287 145266107 -31708033 + L1MD2 LINE L1 4686 5559 -981 1642 158 17 27 chrX 145266107 145266399 -31707741 + AluJo SINE Alu 9 297 -15 1574 249 105 63 chrX 145266399 145266617 -31707523 + L1MD2 LINE L1 5559 5767 -773 801 183 89 6 chrX 145266617 145266786 -31707354 - THE1C LTR MaLR -2 373 191 444 72 87 29 chrX 145266787 145266856 -31707284 - THE1C LTR MaLR -302 73 1 2017 197 56 23 chrX 145266856 145267373 -31706767 + L1MD2 LINE L1 5761 6294 -459 401 247 0 0 chrX 145267399 145267476 -31706664 + MER21B LTR ERV1 20 96 -767 419 230 65 22 chrX 145267521 145267660 -31706480 + MER21B LTR ERV1 104 248 -615 1079 238 52 34 chrX 145267709 145268037 -31706103 + MER21B LTR ERV1 381 714 -149 852 210 47 37 chrX 145268071 145268472 -31705668 + L1MD2 LINE L1 6297 6753 0 372 353 101 39 chrX 145268473 145268889 -31705251 + L2 LINE L2 2450 2891 -423 212 375 20 20 chrX 145269563 145269715 -31704425 - L2 LINE L2 -277 2995 2844 1465 213 35 38 chrX 145271210 145271576 -31702564 - MLT1A1 LTR MaLR 0 365 1 2082 82 44 3 chrX 145271922 145272216 -31701924 + AluY SINE Alu 1 306 -5 330 123 0 0 chrX 145272273 145272330 -31701810 + (T)n Simple_repeat Simple_repeat 1 57 0 4941 175 41 17 chrX 145272413 145273605 -31700535 - L1MA9 LINE L1 -31 6281 5045 1496 188 32 99 chrX 145274578 145275041 -31699099 - MSTB1 LTR MaLR 0 432 1 21 0 0 0 chrX 145276426 145276447 -31697693 + AT_rich Low_complexity Low_complexity 1 21 0 548 261 54 20 chrX 145276636 145276859 -31697281 - MER110A LTR ERV1 0 468 258 5803 247 86 12 chrX 145277033 145278424 -31695716 + L1M4 LINE L1 8 1552 -5303 2199 239 76 38 chrX 145278424 145278708 -31695432 - MER82 DNA MER2_type -1 652 380 2111 134 0 13 chrX 145278708 145279021 -31695119 + AluSg SINE Alu 1 309 -1 2199 239 76 38 chrX 145279021 145279364 -31694776 - MER82 DNA MER2_type -273 380 1 5803 247 86 12 chrX 145279364 145279758 -31694382 + L1M4 LINE L1 1552 1916 -4939 619 234 75 11 chrX 145279758 145279946 -31694194 + L1M4 LINE L1 3344 3543 -3414 1785 135 4 4 chrX 145279949 145280209 -31693931 + AluSx SINE Alu 37 296 -16 967 114 0 0 chrX 145280226 145280357 -31693783 - AluSq/x SINE Alu -181 131 1 2894 236 22 20 chrX 145280358 145281219 -31692921 + L1M4 LINE L1 5156 6018 -939 1256 159 0 5 chrX 145282739 145283000 -31691140 + AluJb SINE Alu 114 373 0 2503 50 0 0 chrX 145283374 145283672 -31690468 + AluY SINE Alu 1 298 -13 32 26 0 0 chrX 145283827 145283866 -31690274 + AT_rich Low_complexity Low_complexity 1 39 0 666 190 76 0 chrX 145283933 145284091 -31690049 + L1M4 LINE L1 6018 6187 -770 265 200 256 0 chrX 145284089 145284179 -31689961 - L1MC3 LINE L1 -1828 5957 5845 * 1172 246 65 50 chrX 145284185 145284628 -31689512 - MLT1D LTR MaLR -55 450 1 533 201 60 7 chrX 145284630 145284795 -31689345 - L1MC3 LINE L1 -347 5819 5640 2059 218 138 50 chrX 145284816 145285491 -31688649 - Charlie1a DNA MER1_type -721 734 1 204 290 58 0 chrX 145285749 145285818 -31688322 - MIR SINE MIR -93 169 97 2195 180 57 2 chrX 145285831 145286237 -31687903 - MSTA LTR MaLR 0 428 1 9080 169 9 23 chrX 145286237 145287910 -31686230 - MSTA-int LTR MaLR 0 1651 2 2102 168 63 24 chrX 145287912 145288323 -31685817 - MSTA LTR MaLR -1 427 1 194 306 24 47 chrX 145289314 145289399 -31684741 + MIR3 SINE MIR 103 185 -23 280 285 77 23 chrX 145291242 145291372 -31682768 + LTR33 LTR ERVL 116 252 -269 371 254 169 8 chrX 145291416 145291534 -31682606 + LTR33 LTR ERVL 327 463 -58 817 275 128 52 chrX 145292124 145292531 -31681609 - L2 LINE L2 0 3313 2876 27 0 0 0 chrX 145292603 145292630 -31681510 + AT_rich Low_complexity Low_complexity 1 27 0 4813 125 2 26 chrX 145292834 145293625 -31680515 - L1PA15 LINE L1 -5 6160 5389 284 243 36 108 chrX 145293652 145293763 -31680377 + L2 LINE L2 3207 3309 -4 2054 150 142 5 chrX 145293840 145294214 -31679926 - MSTA LTR MaLR 0 428 4 8359 187 17 42 chrX 145294217 145295850 -31678290 - MSTA-int LTR MaLR 0 1651 61 2003 135 120 28 chrX 145295850 145296242 -31677898 - MSTA LTR MaLR 0 428 1 8359 187 17 42 chrX 145296242 145296302 -31677838 - MSTA-int LTR MaLR -1590 61 1 1957 150 135 5 chrX 145296302 145296681 -31677459 - MSTA LTR MaLR 0 428 1 2577 64 35 3 chrX 145298828 145299170 -31674970 + THE1A LTR MaLR 3 355 0 21 0 0 0 chrX 145299303 145299324 -31674816 + AT_rich Low_complexity Low_complexity 1 21 0 2030 77 0 0 chrX 145299852 145300113 -31674027 + L1PA8 LINE L1 5909 6169 -3 1651 194 25 0 chrX 145300144 145300422 -31673718 - AluJo SINE Alu -27 285 1 233 75 9 94 chrX 145300480 145300586 -31673554 + (TTTTA)n Simple_repeat Simple_repeat 2 98 0 265 306 102 15 chrX 145301389 145301595 -31672545 - L1ME1 LINE L1 -247 5919 5696 21 0 0 0 chrX 145301703 145301724 -31672416 + AT_rich Low_complexity Low_complexity 1 21 0 697 276 98 29 chrX 145301739 145302351 -31671789 - L1MCa LINE L1 -4604 2003 1114 204 273 91 0 chrX 145302862 145302939 -31671201 + MIR SINE MIR 110 193 -69 267 187 40 0 chrX 145302939 145303014 -31671126 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 1849 265 53 33 chrX 145303091 145303228 -31670912 - MLT1E LTR MaLR 0 593 460 2176 95 3 0 chrX 145303228 145303562 -31670578 - AluSp SINE Alu 0 335 1 1849 265 53 33 chrX 145303562 145304004 -31670136 - MLT1E LTR MaLR -133 460 1 1382 250 0 0 chrX 145305098 145305398 -31668742 + AluJb SINE Alu 1 300 -12 201 349 64 35 chrX 145305546 145305718 -31668422 - MIR SINE MIR -37 225 49 244 322 152 18 chrX 145305831 145306002 -31668138 + MIR SINE MIR 5 198 -64 956 198 33 24 chrX 145309180 145309392 -31664748 - MER20 DNA MER1_type -5 214 1 250 368 11 11 chrX 145309392 145309487 -31664653 - MIR3 SINE MIR -111 97 3 185 159 23 0 chrX 145309525 145309569 -31664571 + GA-rich Low_complexity Low_complexity 2 46 0 22 0 0 0 chrX 145310040 145310062 -31664078 + AT_rich Low_complexity Low_complexity 1 22 0 995 189 70 17 chrX 145310067 145310331 -31663809 - L1MA8 LINE L1 0 6312 6029 271 122 0 0 chrX 145310332 145310373 -31663767 - L1MA8 LINE L1 -462 5829 5789 3726 315 130 18 chrX 145310373 145310440 -31663700 - L2 LINE L2 -817 2497 2439 2221 164 44 2 chrX 145310440 145310849 -31663291 - MSTA LTR MaLR -2 426 1 3726 315 130 18 chrX 145310849 145312579 -31661561 - L2 LINE L2 -875 2439 498 449 196 36 9 chrX 145313026 145313138 -31661002 + MER53 DNA DNA 22 136 -53 445 128 13 26 chrX 145315471 145315549 -31658591 - AluJ/FLAM SINE Alu -225 87 11 261 248 48 7 chrX 145315566 145315711 -31658429 - L1M4 LINE L1 -2875 3973 3823 514 303 98 33 chrX 145315728 145316626 -31657514 - L1M4 LINE L1 -3080 3768 2813 284 328 15 22 chrX 145317062 145317196 -31656944 + MLT1J LTR MaLR 286 418 -93 4408 181 11 7 chrX 145317548 145318457 -31655683 + L1M2 LINE L1 1628 2540 -4309 261 61 0 0 chrX 145318457 145318490 -31655650 - LTR10C LTR ERV1 0 591 559 * 374 65 0 0 chrX 145318485 145318531 -31655609 + LTR10C LTR ERV1 546 591 0 402 193 34 0 chrX 145318531 145318619 -31655521 - L1M4 LINE L1 -4309 2540 2450 1777 106 0 0 chrX 145318620 145318857 -31655283 + AluSg/x SINE Alu 76 312 0 4689 38 5 0 chrX 145318863 145319421 -31654719 - LTR10C LTR ERV1 -30 561 1 1729 221 10 16 chrX 145319422 145320147 -31653993 + L1M2 LINE L1 2538 3257 -3591 1687 135 26 33 chrX 145320147 145320495 -31653645 - MER4A LTR ERV1 0 664 261 617 152 0 10 chrX 145320495 145320594 -31653546 - MER4A LTR ERV1 -566 98 1 7057 218 21 38 chrX 145320596 145321165 -31652975 + L1M2 LINE L1 3258 3835 -3013 1858 146 0 57 chrX 145321165 145321481 -31652659 + AluSx SINE Alu 1 298 -14 7057 218 21 38 chrX 145321481 145321694 -31652446 + L1M2 LINE L1 3835 4050 -2798 2197 126 3 0 chrX 145321694 145322004 -31652136 + AluSq SINE Alu 1 311 -2 7057 218 21 38 chrX 145322004 145323289 -31650851 + L1M2 LINE L1 4050 5290 -1558 1541 70 143 70 chrX 145323289 145323562 -31650578 + LTR66 LTR ERVL 318 610 0 1309 153 8 8 chrX 145323562 145323816 -31650324 + L1M2 LINE L1 5287 5540 -1308 * 6028 227 32 20 chrX 145323810 145326898 -31647242 - L1PBa LINE L1 -4643 2220 37 237 33 0 0 chrX 145326959 145326989 -31647151 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1767 256 52 21 chrX 145328326 145328846 -31645294 + MLT1F LTR MaLR 7 542 0 278 181 0 48 chrX 145328904 145328987 -31645153 + (TGAA)n Simple_repeat Simple_repeat 3 81 0 2017 127 7 7 chrX 145329406 145329705 -31644435 - AluSx SINE Alu -13 299 1 1935 140 159 8 chrX 145330414 145330786 -31643354 + MSTA LTR MaLR 1 428 0 743 302 91 29 chrX 145330853 145331337 -31642803 - L1ME3 LINE L1 -283 5879 5366 351 270 50 40 chrX 145331376 145331576 -31642564 - L1ME3 LINE L1 -912 5234 5033 509 165 21 10 chrX 145331576 145331673 -31642467 + MER4A LTR ERV1 1 98 -566 1953 120 6 19 chrX 145331673 145332023 -31642117 + MER4A LTR ERV1 261 664 0 426 331 70 41 chrX 145332023 145332392 -31641748 - L1ME3 LINE L1 -1110 5036 4657 1103 199 38 116 chrX 145332774 145332841 -31641299 + MLT1A1 LTR MaLR 1 72 -293 961 96 39 51 chrX 145332841 145333019 -31641121 + L1PA13 LINE L1 5987 6162 -1 1103 199 38 116 chrX 145333019 145333035 -31641105 + MLT1A1 LTR MaLR 72 88 -277 327 25 0 0 chrX 145333035 145333075 -31641065 + (CA)n Simple_repeat Simple_repeat 2 41 0 1103 199 38 116 chrX 145333075 145333386 -31640754 + MLT1A1 LTR MaLR 88 365 0 301 274 78 39 chrX 145333492 145333747 -31640393 - L1ME3 LINE L1 -1504 4642 4378 225 0 0 0 chrX 145333772 145333797 -31640343 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 539 278 14 7 chrX 145333827 145333971 -31640169 + L2 LINE L2 3169 3313 0 360 290 98 72 chrX 145334030 145334651 -31639489 - L1ME3 LINE L1 -1885 4261 3625 531 304 159 5 chrX 145334840 145335060 -31639080 + MIR SINE MIR 3 256 -6 205 263 25 25 chrX 145335060 145335140 -31639000 + CT-rich Low_complexity Low_complexity 4 83 0 1620 267 44 32 chrX 145335629 145336306 -31637834 - L1MC4a LINE L1 -1803 5988 5304 779 301 125 44 chrX 145336307 145337029 -31637111 - L1MC4a LINE L1 -851 5278 4499 243 88 0 0 chrX 145337480 145337514 -31636626 + (TG)n Simple_repeat Simple_repeat 1 34 0 361 316 46 68 chrX 145337521 145337758 -31636382 - HAL1 LINE L1 -864 1643 1412 395 273 159 31 chrX 145337790 145338017 -31636123 - L1MC4a LINE L1 -4864 1255 1000 10656 168 12 22 chrX 145338044 145341521 -31632619 - L1MA2 LINE L1 0 7723 4281 221 77 51 0 chrX 145341655 145341694 -31632446 + A-rich Low_complexity Low_complexity 2 42 0 356 270 120 0 chrX 145342703 145342803 -31631337 - MIR SINE MIR -15 247 136 817 242 45 19 chrX 145342806 145343070 -31631070 - L1MA2 LINE L1 -7279 286 16 185 200 25 0 chrX 145343075 145343115 -31631025 - MIR SINE MIR -114 148 108 17116 156 15 52 chrX 145343476 145351074 -31623066 - L1PA14 LINE L1 -2 7597 2 324 285 200 24 chrX 145351180 145351345 -31622795 + MIR SINE MIR 59 252 -10 435 279 107 8 chrX 145351774 145351896 -31622244 - L2 LINE L2 0 3272 3139 194 354 73 0 chrX 145352039 145352135 -31622005 + L2 LINE L2 2577 2679 -635 228 213 0 0 chrX 145352249 145352296 -31621844 + (CA)n Simple_repeat Simple_repeat 2 48 0 511 309 28 6 chrX 145353386 145353564 -31620576 - MIR SINE MIR 0 262 81 3999 174 14 38 chrX 145353685 145354548 -31619592 - L1MB4 LINE L1 -4 6176 5335 2561 121 3 0 chrX 145354548 145354911 -31619229 + THE1B LTR MaLR 1 364 0 3999 174 14 38 chrX 145354911 145354964 -31619176 - L1MB4 LINE L1 -845 5335 5282 22 0 0 0 chrX 145354964 145354986 -31619154 + AT_rich Low_complexity Low_complexity 1 22 0 435 315 60 32 chrX 145356481 145356697 -31617443 - MLT1J2 LTR MaLR -53 397 176 336 236 72 36 chrX 145356752 145356947 -31617193 + MER34B LTR ERV1 359 560 -5 381 198 0 12 chrX 145356951 145357032 -31617108 + MER20 DNA MER1_type 140 219 0 326 284 167 0 chrX 145357037 145357139 -31617001 + L2 LINE L2 3153 3271 -1 256 245 13 112 chrX 145357575 145357808 -31616332 - L1ME4a LINE L1 -199 5922 5713 2371 137 16 20 chrX 145357945 145358389 -31615751 - L1MA2 LINE L1 -106 7617 7176 650 124 0 0 chrX 145358413 145358510 -31615630 - L1PA10 LINE L1 -11 6157 6061 5511 104 43 1 chrX 145358511 145359370 -31614770 - L1PA10 LINE L1 -1 6167 5273 12994 202 29 24 chrX 145359373 145362071 -31612069 - L1P3 LINE L1 -2384 4077 1262 189 0 0 0 chrX 145362071 145362092 -31612048 + (TTG)n Simple_repeat Simple_repeat 1 21 0 12994 202 29 24 chrX 145362092 145363360 -31610780 - L1P3 LINE L1 -5199 1262 2 4221 168 7 1 chrX 145363358 145364639 -31609501 - L1MA2 LINE L1 -538 7185 5896 * 8550 196 21 15 chrX 145364611 145368549 -31605591 - L1MA2 LINE L1 -3220 4345 20 280 262 0 0 chrX 145368774 145368835 -31605305 + MER82 DNA MER2_type 45 105 -548 200 346 19 19 chrX 145368943 145369050 -31605090 - MIR SINE MIR -69 139 33 777 268 14 14 chrX 145369129 145369338 -31604802 + MER82 DNA MER2_type 444 652 -1 1422 245 57 26 chrX 145369609 145370099 -31604041 - MLT1D LTR MaLR 0 505 1 653 279 16 11 chrX 145372482 145372665 -31601475 + LTR33 LTR ERVL 103 286 -235 306 343 116 0 chrX 145372815 145372996 -31601144 + L3 LINE CR1 1263 1464 -113 918 43 0 0 chrX 145373098 145373213 -31600927 - L1PA2 LINE L1 -1 6154 6040 363 0 0 0 chrX 145373213 145373262 -31600878 + L1PA3 LINE L1 5969 6017 -138 224 163 0 20 chrX 145373636 145373685 -31600455 + CT-rich Low_complexity Low_complexity 4 51 0 203 167 0 0 chrX 145373812 145373854 -31600286 + A-rich Low_complexity Low_complexity 1 42 0 215 313 0 0 chrX 145373875 145373923 -31600217 - L2 LINE L2 -88 3184 3137 31 26 0 0 chrX 145374318 145374356 -31599784 + AT_rich Low_complexity Low_complexity 1 38 0 665 250 5 37 chrX 145375323 145375539 -31598601 - MER3 DNA MER1_type 0 209 1 237 65 0 0 chrX 145376299 145376330 -31597810 + (CA)n Simple_repeat Simple_repeat 1 31 0 2194 119 46 30 chrX 145376331 145376700 -31597440 + THE1C LTR MaLR 1 375 0 9030 142 29 42 chrX 145376700 145378301 -31595839 + THE1C-int LTR MaLR 1 1580 0 2037 148 44 14 chrX 145378301 145378665 -31595475 + THE1C LTR MaLR 1 375 0 2296 98 7 0 chrX 145379079 145379384 -31594756 - AluSc SINE Alu -2 307 1 306 287 32 11 chrX 145379401 145379495 -31594645 + MIR SINE MIR 167 262 0 202 378 54 0 chrX 145380200 145380311 -31593829 + MER5A DNA MER1_type 43 159 -30 2231 124 48 20 chrX 145380500 145380854 -31593286 - THE1B LTR MaLR 0 364 1 11193 113 3 1 chrX 145380854 145382430 -31591710 - THE1B-int LTR MaLR 0 1580 1 1812 133 48 82 chrX 145382430 145382481 -31591659 - THE1B LTR MaLR 0 364 313 488 175 0 21 chrX 145382481 145382578 -31591562 + L1PA8A LINE L1 6037 6131 0 1812 133 48 82 chrX 145382578 145382903 -31591237 - THE1B LTR MaLR -51 313 1 19547 89 7 4 chrX 145383055 145385761 -31588379 - HERVL LTR ERVL -893 4761 2050 4558 112 1 0 chrX 145385755 145386422 -31587718 - HERVL LTR ERVL -3740 1914 1247 * 1724 102 13 66 chrX 145386424 145386728 -31587412 + L1PA13 LINE L1 5861 6148 -15 1323 235 30 15 chrX 145386751 145387146 -31586994 - L1M4 LINE L1 -2122 4024 3624 1656 84 17 8 chrX 145387516 145387753 -31586387 - L1PA11 LINE L1 0 6174 5936 4268 235 37 58 chrX 145387753 145388600 -31585540 + L1PA10 LINE L1 347 1210 -5251 194 0 39 0 chrX 145388600 145388626 -31585514 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 4268 235 37 58 chrX 145388626 145388733 -31585407 + L1PA10 LINE L1 1210 1318 -5143 213 65 0 0 chrX 145388733 145388764 -31585376 + (CAA)n Simple_repeat Simple_repeat 1 31 0 4268 235 37 58 chrX 145388764 145389697 -31584443 + L1PA10 LINE L1 1318 2294 -4167 8847 144 10 0 chrX 145389697 145391960 -31582180 + L1PA10 LINE L1 4195 6477 -6 559 286 23 14 chrX 145391974 145392194 -31581946 + L1ME1 LINE L1 3331 3552 -2594 1472 223 96 49 chrX 145392194 145392630 -31581510 - MLT1D LTR MaLR 0 505 60 5285 238 40 23 chrX 145392630 145394772 -31579368 + L1ME1 LINE L1 3574 5752 -414 1309 203 36 90 chrX 145394786 145394863 -31579277 + MLT1A1 LTR MaLR 10 90 -275 2381 36 4 4 chrX 145394863 145395196 -31578944 + AluY SINE Alu 1 333 0 1309 203 36 90 chrX 145395196 145395482 -31578658 + MLT1A1 LTR MaLR 90 354 -11 1097 245 26 59 chrX 145395491 145395916 -31578224 + L1ME1 LINE L1 5755 6165 -1 26 0 0 0 chrX 145395961 145395987 -31578153 + AT_rich Low_complexity Low_complexity 1 26 0 190 286 16 16 chrX 145396032 145396095 -31578045 - MIR3 SINE MIR -135 73 11 4333 147 44 8 chrX 145396204 145396951 -31577189 - L1PA16 LINE L1 -1 6165 5392 487 268 163 7 chrX 145397239 145397392 -31576748 + MER5A DNA MER1_type 7 183 -6 210 342 126 32 chrX 145397656 145397846 -31576294 + L2 LINE L2 3096 3303 -10 2247 261 72 24 chrX 145397855 145398729 -31575411 - L1ME3A LINE L1 -1 6169 5254 1247 171 5 5 chrX 145398821 145399032 -31575108 + AluSx SINE Alu 1 211 -101 24 0 0 0 chrX 145399068 145399092 -31575048 + AT_rich Low_complexity Low_complexity 1 24 0 5056 99 33 18 chrX 145399314 145400082 -31574058 - LTR19C LTR ERV1 0 779 1 2229 76 7 30 chrX 145400298 145400601 -31573539 - AluY SINE Alu -15 296 1 2433 64 3 0 chrX 145400746 145401041 -31573099 - AluSp SINE Alu -16 297 2 388 153 0 10 chrX 145401059 145401135 -31573005 + MER5A DNA MER1_type 4 78 -111 1904 134 7 7 chrX 145402035 145402326 -31571814 + AluSq SINE Alu 1 291 -22 4754 53 5 0 chrX 145402740 145403328 -31570812 - LTR10C LTR ERV1 0 591 1 216 0 0 0 chrX 145403454 145403478 -31570662 + (TG)n Simple_repeat Simple_repeat 1 24 0 247 305 13 21 chrX 145404146 145404272 -31569868 + MIR SINE MIR 16 169 -93 249 33 0 0 chrX 145404298 145404328 -31569812 + (CA)n Simple_repeat Simple_repeat 1 30 0 319 310 20 0 chrX 145404479 145404579 -31569561 + MIR3 SINE MIR 58 159 -49 466 295 133 6 chrX 145405203 145405369 -31568771 + MIR SINE MIR 32 218 -44 22 0 0 0 chrX 145406264 145406286 -31567854 + AT_rich Low_complexity Low_complexity 1 22 0 2833 10 0 0 chrX 145406637 145406947 -31567193 - AluYa5 SINE Alu -1 310 1 2380 107 0 0 chrX 145407054 145407363 -31566777 + AluSg SINE Alu 2 310 0 583 273 49 80 chrX 145407737 145408134 -31566006 - LTR33 LTR ERVL 0 521 38 421 288 113 50 chrX 145410064 145410619 -31563521 - HAL1 LINE L1 -146 2361 1772 403 245 11 0 chrX 145410720 145410825 -31563315 - MLT1H LTR MaLR -359 190 45 516 72 0 0 chrX 145410982 145411051 -31563089 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2181 99 36 0 chrX 145411051 145411534 -31562606 - AluSp SINE Alu 0 313 1 429 266 41 10 chrX 145412285 145412476 -31561664 + L1MC4a LINE L1 5639 5832 -316 515 282 272 0 chrX 145412490 145412692 -31561448 + MIR SINE MIR 6 262 0 330 286 30 79 chrX 145413238 145413441 -31560699 - MIR SINE MIR -64 198 6 2246 121 0 9 chrX 145414346 145414661 -31559479 + AluSx SINE Alu 1 312 0 251 326 37 41 chrX 145415417 145415635 -31558505 - L2 LINE L2 -881 2433 2217 2261 101 0 0 chrX 145415760 145416057 -31558083 + AluSg SINE Alu 1 297 -13 793 158 54 49 chrX 145416075 145416259 -31557881 + MER53 DNA DNA 2 186 -3 1460 350 112 26 chrX 145416570 145418036 -31556104 - L2 LINE L2 -5 3267 1682 817 156 0 0 chrX 145418062 145418184 -31555956 - AluJb SINE Alu -188 124 3 476 314 98 35 chrX 145418212 145418703 -31555437 - L2 LINE L2 -1605 1709 1188 448 239 0 64 chrX 145419835 145419944 -31554196 - L2 LINE L2 -18 3254 3153 3765 100 5 20 chrX 145421107 145421669 -31552471 + MER41A LTR ERV1 1 554 0 241 268 0 0 chrX 145421882 145421938 -31552202 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 235 293 30 0 chrX 145422150 145422283 -31551857 + L1MEd LINE L1 702 838 -5281 305 329 22 37 chrX 145422398 145422720 -31551420 + L1MEd LINE L1 2587 2903 -3226 550 0 0 28 chrX 145422866 145422938 -31551202 + (GAA)n Simple_repeat Simple_repeat 3 72 0 352 283 126 15 chrX 145423019 145423217 -31550923 + L1MEd LINE L1 3162 3381 -2748 204 294 69 69 chrX 145424069 145424171 -31549969 - MIR SINE MIR -65 143 42 671 100 0 0 chrX 145424227 145424327 -31549813 + L1PA4 LINE L1 6056 6155 0 21 0 0 0 chrX 145426010 145426031 -31548109 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 145426641 145426662 -31547478 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 145427975 145427996 -31546144 + AT_rich Low_complexity Low_complexity 1 21 0 394 284 156 7 chrX 145428707 145428848 -31545292 - L2 LINE L2 -276 3037 2876 728 280 230 15 chrX 145428961 145429361 -31544779 - L2 LINE L2 -965 2349 1864 892 300 63 38 chrX 145429394 145429741 -31544399 - L2 LINE L2 -2655 659 304 260 296 68 28 chrX 145429758 145430262 -31543878 + L1P LINE L1 4824 5351 -795 21 0 0 0 chrX 145430409 145430430 -31543710 + AT_rich Low_complexity Low_complexity 1 21 0 2463 53 0 7 chrX 145430608 145430911 -31543229 - AluY SINE Alu -10 301 1 369 287 165 0 chrX 145431596 145431760 -31542380 - L1ME1 LINE L1 -4 6162 5972 327 252 104 90 chrX 145431785 145432007 -31542133 + L1ME4a LINE L1 5880 6104 -17 6853 19 0 0 chrX 145432020 145432808 -31541332 - L1PA3 LINE L1 -6 6149 5362 321 104 0 0 chrX 145432807 145432855 -31541285 - L1M1 LINE L1 -4533 3032 2985 * 8326 203 21 8 chrX 145432854 145434445 -31539695 - L1M1 LINE L1 -5879 1686 74 267 253 0 0 chrX 145434513 145434592 -31539548 + (TA)n Simple_repeat Simple_repeat 2 80 0 396 0 0 0 chrX 145434824 145434868 -31539272 + (TG)n Simple_repeat Simple_repeat 2 45 0 204 128 64 0 chrX 145434869 145434916 -31539224 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 170 64 43 chrX 145434921 145435015 -31539125 - L1MC4 LINE L1 -1337 6705 6610 264 296 53 66 chrX 145435672 145435824 -31538316 + MLT1L LTR MaLR 8 157 -458 242 270 32 0 chrX 145435912 145435975 -31538165 - MER20B DNA MER1_type -681 102 38 356 244 95 95 chrX 145436008 145436138 -31538002 + MLT1L LTR MaLR 159 291 -324 2389 90 0 3 chrX 145436138 145436439 -31537701 + AluSg SINE Alu 1 300 -10 356 244 95 95 chrX 145436439 145436529 -31537611 + MLT1L LTR MaLR 290 379 -236 366 271 12 0 chrX 145437073 145437158 -31536982 - L2 LINE L2 -8 3264 3179 229 296 96 37 chrX 145437353 145437488 -31536652 - L2 LINE L2 -90 3223 3081 944 264 8 38 chrX 145437809 145438074 -31536066 + MIR SINE MIR 3 259 -3 602 346 61 3 chrX 145438512 145438839 -31535301 - L2 LINE L2 -1489 1825 1480 446 371 71 38 chrX 145438840 145439260 -31534880 - L2 LINE L2 -2016 1298 865 1096 301 50 15 chrX 145439379 145440232 -31533908 + L1M4 LINE L1 2855 3737 -2409 927 261 88 0 chrX 145440248 145440509 -31533631 + L2 LINE L2 2524 2807 -507 784 234 72 27 chrX 145440512 145440734 -31533406 + MER58 DNA MER1_type 1 232 -2188 684 267 203 27 chrX 145440746 145441120 -31533020 + L2 LINE L2 2874 3313 0 281 348 95 0 chrX 145441135 145441293 -31532847 - MIR SINE MIR 0 262 90 318 256 35 23 chrX 145442097 145442183 -31531957 - MER5B DNA MER1_type -3 175 89 600 175 21 0 chrX 145442186 145442329 -31531811 - L1 LINE L1 -2932 3214 3069 1572 209 0 0 chrX 145442330 145442651 -31531489 - L1 LINE L1 -3557 2589 2269 1339 199 52 0 chrX 145442652 145442923 -31531217 - L1PBa LINE L1 -6578 285 1 381 315 63 7 chrX 145443119 145443262 -31530878 + MIR SINE MIR 11 161 -101 248 282 81 81 chrX 145443409 145443668 -31530472 + L2 LINE L2 2168 2426 -888 422 203 109 0 chrX 145443823 145443963 -31530177 + MIR SINE MIR 3 164 -65 241 82 41 0 chrX 145444275 145444324 -31529816 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 199 336 86 70 chrX 145444574 145444818 -31529322 + L2 LINE L2 2578 2825 -489 478 204 59 66 chrX 145445979 145446131 -31528009 - MIR SINE MIR -52 210 60 258 292 0 0 chrX 145446310 145446375 -31527765 + MER81 DNA DNA 15 79 -35 2222 102 3 0 chrX 145446472 145446802 -31527338 - AluSc SINE Alu 0 309 1 13152 173 31 21 chrX 145449194 145451902 -31522238 + L1M1 LINE L1 15 3446 -4119 5567 199 43 16 chrX 145451898 145453195 -31520945 + L1M1 LINE L1 4587 5918 -1647 * 4601 104 19 14 chrX 145453198 145453917 -31520223 + L1MA2 LINE L1 5581 6303 -1 395 325 10 25 chrX 145455361 145455736 -31518404 + GA-rich Low_complexity Low_complexity 1 369 0 2278 97 3 0 chrX 145456547 145456846 -31517294 - AluSg SINE Alu -10 300 1 183 270 135 0 chrX 145457120 145457209 -31516931 + MIR SINE MIR 131 231 -31 329 255 87 34 chrX 145457330 145457479 -31516661 - L1ME4a LINE L1 -30 6091 5935 773 247 32 0 chrX 145457507 145457665 -31516475 + MER45A DNA AcHobo 13 175 -3 285 246 46 46 chrX 145457705 145457835 -31516305 - L1ME4a LINE L1 -201 5920 5791 374 104 0 15 chrX 145459142 145459209 -31514931 - L1MA4A LINE L1 -6 6297 6232 13294 192 26 18 chrX 145459213 145462078 -31512062 - L1 LINE L1 -757 6808 3965 1023 156 0 0 chrX 145462078 145462257 -31511883 + (TA)n Simple_repeat Simple_repeat 2 180 0 13294 192 26 18 chrX 145462257 145463674 -31510466 - L1 LINE L1 -3600 3965 2481 1090 35 28 0 chrX 145463674 145463819 -31510321 + (TTTC)n Simple_repeat Simple_repeat 2 150 0 13294 192 26 18 chrX 145463819 145464620 -31509520 - L1 LINE L1 -5084 2481 1687 3336 196 0 3 chrX 145465328 145465900 -31508240 - L1 LINE L1 -5874 1691 1122 4674 238 24 1 chrX 145465902 145466920 -31507220 - L1 LINE L1 -6503 1062 22 1606 186 6 34 chrX 145466921 145467215 -31506925 - L1 LINE L1 -2182 4666 4382 270 0 0 0 chrX 145467215 145467245 -31506895 + (TG)n Simple_repeat Simple_repeat 1 30 0 1606 186 6 34 chrX 145467245 145467305 -31506835 - L1 LINE L1 -2466 4382 4322 2749 223 72 6 chrX 145467305 145468102 -31506038 - L1 LINE L1 -2851 3997 3149 494 150 26 0 chrX 145468111 145468264 -31505876 + (TA)n Simple_repeat Simple_repeat 2 158 0 1436 197 117 8 chrX 145468299 145468659 -31505481 - L1PA13 LINE L1 -3 6160 5762 * 2546 204 44 8 chrX 145468632 145469460 -31504680 - L1 LINE L1 -3743 3105 2252 1864 175 19 26 chrX 145469461 145469839 -31504301 + THE1C LTR MaLR 1 375 0 10311 114 17 36 chrX 145469839 145471450 -31502690 + THE1C-int LTR MaLR 1 1580 0 1735 172 34 6 chrX 145471450 145471776 -31502364 + THE1A LTR MaLR 1 335 -20 225 227 136 0 chrX 145471890 145471978 -31502162 - L1ME4a LINE L1 -31 6090 5991 188 293 27 80 chrX 145472054 145472242 -31501898 - L2 LINE L2 -69 3244 3067 2226 104 0 0 chrX 145472948 145473254 -31500886 + AluSc SINE Alu 1 306 0 21 0 0 0 chrX 145473373 145473394 -31500746 + AT_rich Low_complexity Low_complexity 1 21 0 1368 225 21 50 chrX 145474162 145474540 -31499600 - MLT1A2 LTR MaLR 0 374 8 2105 133 24 29 chrX 145474540 145474915 -31499225 + THE1C LTR MaLR 1 373 -2 428 318 47 61 chrX 145475017 145475460 -31498680 - L1M4 LINE L1 -1087 5059 4623 426 130 0 0 chrX 145475479 145475548 -31498592 + MST-int LTR MaLR 92 160 -1491 26 50 0 0 chrX 145475557 145475597 -31498543 + AT_rich Low_complexity Low_complexity 1 40 0 30 45 0 0 chrX 145475762 145475806 -31498334 + AT_rich Low_complexity Low_complexity 1 44 0 561 318 15 30 chrX 145476002 145476339 -31497801 - HAL1b LINE L1 -809 539 208 477 311 43 11 chrX 145476898 145477094 -31497046 - MIR SINE MIR -50 212 15 204 204 0 0 chrX 145477807 145477851 -31496289 + (CA)n Simple_repeat Simple_repeat 1 44 0 1370 170 0 0 chrX 145478150 145478385 -31495755 + L1MA8 LINE L1 4705 4939 -1207 554 43 11 32 chrX 145478400 145478493 -31495647 + (TA)n Simple_repeat Simple_repeat 1 91 0 293 200 67 44 chrX 145478499 145478589 -31495551 + L1MA8 LINE L1 5783 5874 -417 488 113 25 0 chrX 145478590 145478670 -31495470 + MSTA LTR MaLR 347 428 0 1278 154 116 9 chrX 145478672 145478905 -31495235 + MSTA LTR MaLR 171 428 0 2357 193 8 6 chrX 145478905 145479387 -31494753 + L1MA6 LINE L1 5311 5793 -507 241 96 0 39 chrX 145479395 145479447 -31494693 + (TA)n Simple_repeat Simple_repeat 2 51 0 1107 210 29 17 chrX 145479449 145479736 -31494404 + L1MA6 LINE L1 5782 6071 -171 571 140 37 28 chrX 145479747 145479854 -31494286 + AluSg/x SINE Alu 186 293 -17 11525 193 6 14 chrX 145479866 145480758 -31493382 + L1P LINE L1 2612 3510 -2636 2251 165 33 14 chrX 145480758 145481177 -31492963 - MSTA LTR MaLR 0 428 2 11525 193 6 14 chrX 145481177 145482710 -31491430 + L1P LINE L1 3510 5016 -1130 296 336 8 42 chrX 145484753 145484872 -31489268 + L2 LINE L2 3182 3296 -17 1059 218 92 0 chrX 145484969 145485240 -31488900 + MLT1D LTR MaLR 1 296 -209 2133 230 89 48 chrX 145485284 145485897 -31488243 + Zaphod DNA AcHobo 70 656 -3375 1718 101 38 4 chrX 145485897 145486135 -31488005 + AluSq SINE Alu 1 246 -67 2133 230 89 48 chrX 145486135 145486747 -31487393 + Zaphod DNA AcHobo 656 3961 -70 755 95 0 95 chrX 145486747 145486873 -31487267 + AluSg SINE Alu 2 115 -195 236 119 0 0 chrX 145486873 145486915 -31487225 + Alu SINE Alu 258 299 -3 233 263 0 0 chrX 145486985 145487042 -31487098 - MIR SINE MIR -106 156 100 334 267 0 0 chrX 145487110 145487185 -31486955 + MER63 DNA MER1_type 676 750 -86 2085 136 41 22 chrX 145487240 145487608 -31486532 + THE1C LTR MaLR 1 375 0 1162 115 35 0 chrX 145487900 145488074 -31486066 - Tigger3(Golem) DNA MER2_type -55 2974 2795 234 189 0 0 chrX 145488564 145488601 -31485539 + LTR33A LTR ERVL 485 521 -2 244 324 34 28 chrX 145488746 145488925 -31485215 - L1ME LINE L1 -302 5819 5640 405 337 91 41 chrX 145488971 145489113 -31485027 - L2 LINE L2 -15 3257 3124 1543 123 0 18 chrX 145489113 145489173 -31484967 + AluSg/x SINE Alu 76 136 -176 2382 100 0 0 chrX 145489173 145489482 -31484658 + AluSg SINE Alu 1 309 -1 1543 123 0 18 chrX 145489482 145489640 -31484500 + AluSg/x SINE Alu 136 290 -22 405 337 91 41 chrX 145489640 145489990 -31484150 - L2 LINE L2 -148 3124 2732 432 370 11 11 chrX 145489990 145490174 -31483966 - L2 LINE L2 -904 2410 2227 322 361 12 47 chrX 145490224 145490393 -31483747 + MER5A DNA MER1_type 13 186 -3 191 316 31 51 chrX 145490414 145490512 -31483628 - MER5B DNA MER1_type 0 178 83 355 326 29 93 chrX 145490677 145490990 -31483150 + L2 LINE L2 2980 3272 0 280 300 20 80 chrX 145490986 145491136 -31483004 + MIR SINE MIR 56 196 -66 * 227 273 0 18 chrX 145491927 145491982 -31482158 + L2 LINE L2 3256 3309 -4 218 286 107 0 chrX 145492690 145492774 -31481366 + MIR SINE MIR 3 95 -167 1129 281 41 55 chrX 145493347 145493806 -31480334 + L2 LINE L2 2860 3312 -1 23 0 0 0 chrX 145495594 145495617 -31478523 + AT_rich Low_complexity Low_complexity 1 23 0 385 324 156 20 chrX 145496685 145496935 -31477205 + L3 LINE CR1 1291 1574 -3 1653 253 15 141 chrX 145496963 145497151 -31476989 + L2 LINE L2 1869 2079 -1235 2315 70 0 0 chrX 145497151 145497475 -31476665 - AluY SINE Alu 0 324 1 1653 253 15 141 chrX 145497475 145497581 -31476559 + L2 LINE L2 2079 2197 -1117 634 144 0 0 chrX 145497581 145497671 -31476469 - 5S rRNA rRNA -31 90 1 1653 253 15 141 chrX 145497671 145498089 -31476051 + L2 LINE L2 2197 2571 -743 1263 299 47 30 chrX 145498096 145498607 -31475533 + L2 LINE L2 2775 3297 -16 912 267 126 63 chrX 145498607 145499082 -31475058 - MLT1J LTR MaLR 0 511 7 41 21 0 0 chrX 145499212 145499260 -31474880 + AT_rich Low_complexity Low_complexity 1 48 0 245 238 36 24 chrX 145500302 145500386 -31473754 + MLT1K LTR MaLR 499 583 -5 438 94 0 0 chrX 145500735 145500799 -31473341 + (TG)n Simple_repeat Simple_repeat 1 64 0 42 48 0 0 chrX 145501655 145501718 -31472422 + AT_rich Low_complexity Low_complexity 1 63 0 1162 187 14 0 chrX 145501869 145502078 -31472062 + AluJb SINE Alu 1 212 -100 6298 83 13 16 chrX 145502078 145503556 -31470584 + L1PA13 LINE L1 4678 6157 -6 234 111 16 32 chrX 145503567 145503630 -31470510 + (TA)n Simple_repeat Simple_repeat 2 63 0 1185 157 52 4 chrX 145503630 145503859 -31470281 - L1M1 LINE L1 -7306 259 20 406 292 107 12 chrX 145504352 145504520 -31469620 + MIR SINE MIR 79 262 0 2708 193 77 0 chrX 145505613 145506183 -31467957 + MER90 LTR ERV1 1 614 0 32 0 0 0 chrX 145507850 145507882 -31466258 + AT_rich Low_complexity Low_complexity 1 32 0 2209 169 26 14 chrX 145508048 145508475 -31465665 - MSTB1 LTR MaLR 0 432 1 28 29 0 0 chrX 145508808 145508843 -31465297 + AT_rich Low_complexity Low_complexity 1 35 0 256 361 74 14 chrX 145509002 145509218 -31464922 - L2 LINE L2 -1294 2020 1792 1685 176 0 20 chrX 145509231 145509537 -31464603 + AluJb SINE Alu 1 300 -12 245 98 24 0 chrX 145509539 145509580 -31464560 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 249 108 0 0 chrX 145509586 145509623 -31464517 + (TG)n Simple_repeat Simple_repeat 2 38 0 1754 144 149 33 chrX 145509965 145510327 -31463813 - MER4A LTR ERV1 0 664 261 2417 76 0 7 chrX 145510340 145510644 -31463496 - AluY SINE Alu -9 302 1 933 131 75 6 chrX 145510671 145510831 -31463309 + MER41-int LTR ERV1 4380 4550 -1396 510 71 0 14 chrX 145510835 145510905 -31463235 - MER4A LTR ERV1 -595 69 1 14477 129 46 32 chrX 145510916 145511665 -31462475 - MER4A-int LTR ERV1 -5 6593 5856 7438 94 8 19 chrX 145511665 145512743 -31461397 + MER11C LTR ERVK 1 1067 -4 14477 129 46 32 chrX 145512743 145513630 -31460510 - MER4A-int LTR ERV1 -742 5856 4983 495 139 0 0 chrX 145513630 145513709 -31460431 - MADE1 DNA Mariner 0 80 2 14477 129 46 32 chrX 145513709 145514812 -31459328 - MER4A-int LTR ERV1 -1615 4983 3815 3211 145 108 45 chrX 145514823 145515100 -31459040 - MER4A-int LTR ERV1 -2924 3674 3416 2799 16 0 0 chrX 145515100 145515407 -31458733 + AluY SINE Alu 1 307 -4 3211 145 108 45 chrX 145515407 145516010 -31458130 - MER4A-int LTR ERV1 -3182 3416 2852 3804 142 30 47 chrX 145516010 145516713 -31457427 + LTR8 LTR ERV1 1 691 0 3211 145 108 45 chrX 145516713 145516888 -31457252 - MER4A-int LTR ERV1 -3746 2852 1560 3789 139 44 9 chrX 145516896 145517977 -31456163 - MER4A-int LTR ERV1 -5357 1401 198 849 230 81 9 chrX 145517996 145518218 -31455922 - LTR49-int LTR ERV1 -4119 2212 1975 1253 179 0 0 chrX 145518957 145519180 -31454960 - L1PBa LINE L1 -6640 223 1 615 307 15 68 chrX 145519277 145519541 -31454599 + MIR SINE MIR 11 260 -2 277 149 179 0 chrX 145519616 145519683 -31454457 - MER53 DNA DNA -2 187 109 443 180 33 41 chrX 145519723 145519845 -31454295 - MER53 DNA DNA -63 126 6 320 318 35 55 chrX 145520017 145520272 -31453868 - MIR SINE MIR -11 251 2 226 258 16 0 chrX 145573693 145573755 -31400385 + MLT1E1 LTR MaLR 7 69 -585 1091 251 10 23 chrX 145573964 145574271 -31399869 + MLT1E3 LTR MaLR 322 624 0 16556 134 49 9 chrX 145575127 145577889 -31396251 - Tigger3(Golem) DNA MER2_type 0 3029 381 5035 98 35 17 chrX 145577889 145577960 -31396180 - LTR19C LTR ERV1 0 779 711 369 43 0 0 chrX 145577960 145578007 -31396133 + (CA)n Simple_repeat Simple_repeat 2 48 0 5035 98 35 17 chrX 145578007 145578219 -31395921 - LTR19C LTR ERV1 -68 711 504 335 23 23 0 chrX 145578219 145578263 -31395877 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 5035 98 35 17 chrX 145578263 145578743 -31395397 - LTR19C LTR ERV1 -275 504 1 16556 134 49 9 chrX 145578743 145578884 -31395256 - Tigger3(Golem) DNA MER2_type -2648 381 8 567 255 38 0 chrX 145578893 145579050 -31395090 + MER58B DNA MER1_type 179 341 0 345 275 31 98 chrX 145580146 145580286 -31393854 - L1ME LINE L1 -638 5526 5401 2420 84 7 0 chrX 145580286 145580594 -31393546 - AluSp SINE Alu -3 310 1 345 275 31 98 chrX 145580594 145580646 -31393494 - L1ME LINE L1 -763 5401 5347 6364 29 0 0 chrX 145580664 145581486 -31392654 + L1P LINE L1 2634 3455 -2691 28 0 0 0 chrX 145581486 145581514 -31392626 + AT_rich Low_complexity Low_complexity 1 28 0 11088 33 0 0 chrX 145583519 145584911 -31389229 + L1P LINE L1 3444 4835 -1311 7635 20 0 8 chrX 145585098 145586324 -31387816 - L1PA3 LINE L1 -3 6152 4932 458 291 69 45 chrX 145586508 145587061 -31387079 - L1ME LINE L1 -1304 4842 4277 387 0 0 0 chrX 145587144 145587187 -31386953 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1054 195 84 17 chrX 145587366 145587653 -31386487 - MLT1D LTR MaLR 0 505 200 497 216 3 92 chrX 145587740 145587935 -31386205 - MLT1E2 LTR MaLR -322 183 1 324 0 0 0 chrX 145588174 145588210 -31385930 + (TG)n Simple_repeat Simple_repeat 1 36 0 310 287 86 38 chrX 145588210 145588419 -31385721 - L1ME LINE L1 -2384 3762 3544 25 0 0 0 chrX 145588479 145588504 -31385636 + AT_rich Low_complexity Low_complexity 1 25 0 244 281 70 15 chrX 145588544 145588875 -31385265 - L1ME LINE L1 -2882 3264 2916 1247 256 73 25 chrX 145589473 145590054 -31384086 + MLT1E3 LTR MaLR 1 624 0 2735 102 74 12 chrX 145590304 145590867 -31383273 + MER4E LTR ERV1 1 771 -8 21 36 0 0 chrX 145590953 145590981 -31383159 + AT_rich Low_complexity Low_complexity 1 28 0 737 219 0 30 chrX 145590981 145591150 -31382990 - L1PB4 LINE L1 -33 6123 5960 532 262 79 25 chrX 145591162 145591364 -31382776 - MER83B LTR ERV1 -13 365 153 680 167 0 2 chrX 145591605 145591730 -31382410 - L1PB4 LINE L1 -209 5947 5825 2362 77 0 49 chrX 145591836 145592163 -31381977 - AluY SINE Alu 0 311 1 266 396 47 10 chrX 145592287 145592479 -31381661 - MIR SINE MIR -19 243 45 1857 114 13 33 chrX 145592584 145592891 -31381249 + Tigger2a DNA MER2_type 1 301 -133 2201 197 105 78 chrX 145592899 145593660 -31380480 + LTR1B LTR ERV1 3 784 -42 507 237 68 0 chrX 145593709 145593827 -31380313 + Tigger2a DNA MER2_type 319 444 0 260 371 144 27 chrX 145594121 145594633 -31379507 + L2 LINE L2 294 865 -2449 620 260 101 64 chrX 145594783 145595141 -31378999 + MLT1H1 LTR MaLR 185 555 0 260 130 37 0 chrX 145595485 145595539 -31378601 + CT-rich Low_complexity Low_complexity 4 59 0 193 250 0 23 chrX 145595569 145595613 -31378527 - L2 LINE L2 -20 3252 3210 3536 249 93 18 chrX 145595834 145597368 -31376772 + L1MB8 LINE L1 3016 4664 -1482 1284 234 99 4 chrX 145597375 145597772 -31376368 - MLT1D LTR MaLR 0 505 3 3762 218 30 20 chrX 145597775 145599266 -31374874 + L1MB8 LINE L1 4662 6164 -14 24 0 0 0 chrX 145599301 145599325 -31374815 + AT_rich Low_complexity Low_complexity 1 24 0 2168 132 0 0 chrX 145599700 145600004 -31374136 + AluSx SINE Alu 1 304 -8 1331 174 38 13 chrX 145601061 145601377 -31372763 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chrX 145601660 145601683 -31372457 + AT_rich Low_complexity Low_complexity 1 23 0 5966 85 37 104 chrX 145602177 145603356 -31370784 + MER11C LTR ERVK 1 1071 0 1704 132 0 0 chrX 145603485 145603728 -31370412 - AluSg1 SINE Alu -66 243 1 1715 142 56 51 chrX 145603780 145604153 -31369987 + THE1C LTR MaLR 1 375 0 5867 197 25 3 chrX 145604153 145605290 -31368850 + THE1C-int LTR MaLR 1 1162 -489 2586 101 14 6 chrX 145605295 145605651 -31368489 + THE1B LTR MaLR 6 364 0 3052 128 27 12 chrX 145605651 145606135 -31368005 + THE1C-int LTR MaLR 1090 1580 0 1649 176 43 40 chrX 145606135 145606509 -31367631 + THE1C LTR MaLR 1 375 0 214 336 97 0 chrX 145606551 145606664 -31367476 + L3 LINE CR1 412 535 -1042 2268 111 0 0 chrX 145606705 145607002 -31367138 - AluSx SINE Alu -15 297 1 894 45 0 0 chrX 145608413 145608524 -31365616 + (TA)n Simple_repeat Simple_repeat 1 111 0 198 0 0 0 chrX 145608523 145608545 -31365595 + (GA)n Simple_repeat Simple_repeat 2 23 0 * 1359 233 42 0 chrX 145608759 145609046 -31365094 + AluSg SINE Alu 1 299 -11 1769 289 37 8 chrX 145609341 145609856 -31364284 + L2 LINE L2 2268 2797 -517 969 153 11 23 chrX 145609860 145610037 -31364103 - L1PA15 LINE L1 -56 6109 5935 26 30 0 0 chrX 145611393 145611426 -31362714 + AT_rich Low_complexity Low_complexity 1 33 0 1785 138 29 0 chrX 145611648 145611959 -31362181 + L1P4 LINE L1 5294 5613 -552 4044 144 25 6 chrX 145611986 145612672 -31361468 + L1PA13 LINE L1 5459 6157 -6 485 259 74 15 chrX 145613681 145613816 -31360324 + MLT1J1 LTR MaLR 6 148 -298 2046 176 71 27 chrX 145613816 145614254 -31359886 - LTR2B LTR ERV1 0 490 34 394 250 48 90 chrX 145614351 145614474 -31359666 + MLT1J1 LTR MaLR 238 352 -94 1946 134 40 35 chrX 145614474 145614847 -31359293 - THE1C LTR MaLR 0 375 1 394 250 48 90 chrX 145614847 145614911 -31359229 + MLT1J1 LTR MaLR 352 417 -29 717 218 26 103 chrX 145615465 145615699 -31358441 + MER58A DNA MER1_type 7 222 -2 482 267 99 35 chrX 145615854 145616056 -31358084 + L3 LINE CR1 1083 1297 -280 272 364 15 23 chrX 145616209 145616341 -31357799 + L2 LINE L2 1810 1940 -1374 204 315 119 49 chrX 145616655 145616798 -31357342 - L2 LINE L2 0 3313 3161 512 343 43 45 chrX 145616838 145617311 -31356829 - L2 LINE L2 -136 3177 2711 1055 167 11 0 chrX 145617394 145617574 -31356566 + AluJb SINE Alu 131 312 0 307 343 18 41 chrX 145617742 145617911 -31356229 + MIR SINE MIR 19 183 -79 513 0 0 0 chrX 145619283 145619340 -31354800 + (TA)n Simple_repeat Simple_repeat 1 57 0 869 360 30 13 chrX 145619542 145619936 -31354204 - LTR16A LTR ERVL -2 448 48 214 186 70 0 chrX 145620046 145620089 -31354051 + L2 LINE L2 3268 3313 0 766 319 70 0 chrX 145620341 145620611 -31353529 - LTR33 LTR ERVL -81 440 152 425 308 48 0 chrX 145620848 145620994 -31353146 + Charlie1 DNA MER1_type 1 153 -2608 814 251 79 9 chrX 145621002 145621332 -31352808 + Charlie1 DNA MER1_type 2409 2761 0 633 225 136 79 chrX 145621530 145621934 -31352206 - MSTC LTR MaLR 0 428 2 195 162 0 0 chrX 145622409 145622446 -31351694 + (TAA)n Simple_repeat Simple_repeat 1 37 0 264 185 62 15 chrX 145622446 145622511 -31351629 + GA-rich Low_complexity Low_complexity 2 69 0 861 274 64 25 chrX 145622959 145623316 -31350824 + L1MDa LINE L1 34 404 -6136 5814 143 21 32 chrX 145624222 145625305 -31348835 + MER11C LTR ERVK 1 1071 0 1801 214 71 6 chrX 145625372 145625848 -31348292 + L1MDa LINE L1 997 1503 -5040 995 238 95 62 chrX 145625900 145626768 -31347372 + L1MDa LINE L1 2120 3049 -3491 315 0 0 0 chrX 145626768 145626803 -31347337 + (CA)n Simple_repeat Simple_repeat 2 36 0 995 238 95 62 chrX 145626803 145626870 -31347270 + L1MDa LINE L1 3049 3112 -3428 1573 196 55 63 chrX 145626880 145627374 -31346766 + MLT1D LTR MaLR 15 504 -1 469 268 24 12 chrX 145627375 145627539 -31346601 + L1MDa LINE L1 3108 3273 -3267 * 539 202 0 62 chrX 145627533 145627662 -31346478 + L1PB4 LINE L1 6028 6148 -8 2185 256 63 40 chrX 145627679 145628673 -31345467 + L1MDa LINE L1 3258 4281 -2259 5785 77 1 0 chrX 145628673 145629431 -31344709 + L1PA8 LINE L1 5413 6171 -1 2185 256 63 40 chrX 145629431 145629537 -31344603 + L1MDa LINE L1 4281 4383 -2157 630 209 80 79 chrX 145629547 145629878 -31344262 - MLT1E3 LTR MaLR -327 299 1 334 260 60 10 chrX 145629972 145630072 -31344068 - L2 LINE L2 -5 3308 3204 276 296 0 0 chrX 145630587 145630658 -31343482 + CT-rich Low_complexity Low_complexity 3 73 0 226 192 8 217 chrX 145631237 145631357 -31342783 + L2 LINE L2 3014 3108 -164 2111 163 25 3 chrX 145631559 145631916 -31342224 - MLT1A1 LTR MaLR 0 365 1 215 374 82 15 chrX 145631992 145632187 -31341953 + L2 LINE L2 2004 2211 -1103 4553 338 54 20 chrX 145632187 145634691 -31339449 + ERVL LTR ERVL 2685 5272 -492 882 297 81 53 chrX 145634691 145635543 -31338597 + L2 LINE L2 2435 3309 -4 2185 105 3 3 chrX 145635731 145636027 -31338113 - AluSg SINE Alu -14 296 1 325 306 110 35 chrX 145636267 145636440 -31337700 - L1ME4a LINE L1 -216 5905 5720 265 329 41 44 chrX 145636478 145636794 -31337346 - L1ME4a LINE L1 -402 5719 5405 21 36 0 0 chrX 145636902 145636930 -31337210 + AT_rich Low_complexity Low_complexity 1 28 0 195 129 0 0 chrX 145637165 145637196 -31336944 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 593 216 33 7 chrX 145637803 145637956 -31336184 + MER96B DNA MER1_type? 256 412 -5 467 263 34 62 chrX 145638369 145638428 -31335712 - MER5B DNA MER1_type -4 174 115 1947 119 44 10 chrX 145638428 145638721 -31335419 + AluSx SINE Alu 1 303 -9 467 263 34 62 chrX 145638721 145638840 -31335300 - MER5B DNA MER1_type -63 115 1 355 354 21 0 chrX 145640272 145640416 -31333724 + MIR3 SINE MIR 61 207 -1 415 326 120 6 chrX 145641068 145641243 -31332897 - MIR SINE MIR -32 230 36 3180 60 12 0 chrX 145641532 145641931 -31332209 + MLT2A1 LTR ERVL 1 404 -40 3707 281 129 29 chrX 145641958 145643303 -31330837 + L2 LINE L2 178 1710 -1604 2260 62 45 10 chrX 145643303 145643592 -31330548 + AluY SINE Alu 1 299 -12 3707 281 129 29 chrX 145643592 145643846 -31330294 + L2 LINE L2 1710 1937 -1377 23 0 0 0 chrX 145643939 145643962 -31330178 + AT_rich Low_complexity Low_complexity 1 23 0 1255 187 9 13 chrX 145644038 145644310 -31329830 - AluJo SINE Alu 0 327 57 25 31 0 0 chrX 145644987 145645019 -31329121 + AT_rich Low_complexity Low_complexity 1 32 0 13407 170 23 21 chrX 145645108 145650854 -31323286 - L1MA3 LINE L1 0 7724 1948 327 347 48 12 chrX 145651639 145652241 -31321899 - L1M4 LINE L1 -1346 4800 4177 1396 165 20 25 chrX 145652605 145653037 -31321103 + L1MB1 LINE L1 5092 5519 -649 1333 198 55 35 chrX 145653099 145653442 -31320698 + L1MB1 LINE L1 5819 6168 0 597 378 35 6 chrX 145653703 145654186 -31319954 + L2 LINE L2 2007 2590 -724 823 249 86 9 chrX 145654240 145654461 -31319679 + MER8 DNA MER2_type 1 238 -1 372 412 0 0 chrX 145654579 145654710 -31319430 + L2 LINE L2 3137 3267 -5 311 371 74 15 chrX 145654721 145654923 -31319217 - MIR SINE MIR -18 244 31 218 305 24 49 chrX 145654933 145655015 -31319125 + MIR SINE MIR 21 100 -108 578 113 0 10 chrX 145655880 145655977 -31318163 + AluY SINE Alu 211 306 -5 232 324 50 40 chrX 145656077 145656299 -31317841 + HAL1 LINE L1 9 232 -2275 450 340 31 6 chrX 145656313 145656475 -31317665 - HAL1 LINE L1 -1814 693 528 980 270 141 75 chrX 145656514 145656977 -31317163 + HAL1 LINE L1 272 703 -1804 2391 82 0 0 chrX 145656977 145657281 -31316859 - AluSc SINE Alu -5 304 1 980 270 141 75 chrX 145657281 145657712 -31316428 + HAL1 LINE L1 703 1225 -1282 1326 280 44 46 chrX 145657824 145658367 -31315773 + HAL1 LINE L1 1458 1999 -508 39 0 0 0 chrX 145658401 145658440 -31315700 + AT_rich Low_complexity Low_complexity 1 39 0 428 216 0 0 chrX 145658440 145658514 -31315626 - MER2 DNA MER2_type 0 345 272 341 134 60 0 chrX 145658541 145658608 -31315532 - MER2 DNA MER2_type -179 166 96 213 146 0 42 chrX 145658649 145658697 -31315443 + (TATG)n Simple_repeat Simple_repeat 3 48 0 846 268 35 46 chrX 145658723 145659204 -31314936 + HAL1 LINE L1 2032 2507 0 1310 207 70 0 chrX 145659463 145659763 -31314377 + L1M4 LINE L1 5349 5669 -515 774 208 0 0 chrX 145659765 145659895 -31314245 + FLAM_C SINE Alu 1 130 -13 273 92 4 0 chrX 145659924 145659970 -31314170 + L1M4 LINE L1 5690 5736 -435 217 226 38 0 chrX 145660222 145660275 -31313865 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 1062 153 158 0 chrX 145660313 145660509 -31313631 + MER30 DNA MER1_type 4 230 0 3260 149 33 191 chrX 145660627 145661318 -31312822 + L1MC3 LINE L1 6747 7171 -614 2173 107 3 10 chrX 145661318 145661617 -31312523 - AluSx SINE Alu -15 297 1 3260 149 33 191 chrX 145661617 145662122 -31312018 + L1MC3 LINE L1 7171 7754 -31 2818 186 39 19 chrX 145662238 145662811 -31311329 + L1MB2 LINE L1 5535 6122 -49 2379 79 0 7 chrX 145662811 145663114 -31311026 + AluSg SINE Alu 1 301 -9 2818 186 39 19 chrX 145663114 145663158 -31310982 + L1MB2 LINE L1 6122 6164 -7 252 263 0 0 chrX 145663506 145663563 -31310577 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 230 186 34 34 chrX 145663717 145663776 -31310364 - L1 LINE L1 -2202 3944 3886 21 0 0 0 chrX 145664374 145664395 -31309745 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrX 145664644 145664671 -31309469 + AT_rich Low_complexity Low_complexity 1 27 0 2209 113 7 0 chrX 145664680 145664989 -31309151 - AluSp SINE Alu -2 311 1 5053 133 18 1 chrX 145664991 145665806 -31308334 - L1PA16 LINE L1 -13 6856 6028 1287 101 0 0 chrX 145665806 145665974 -31308166 - AluSg/x SINE Alu -15 297 130 10722 246 19 20 chrX 145665974 145667030 -31307110 - L1PA16 LINE L1 -819 6030 4975 2227 123 0 0 chrX 145667030 145667332 -31306808 - AluSx SINE Alu -10 302 1 10722 246 19 20 chrX 145667332 145669507 -31304633 - L1PA16 LINE L1 -1874 4975 2801 7974 169 266 39 chrX 145669503 145670922 -31303218 - L1PA16 LINE L1 -4318 2531 1434 * 3044 131 17 6 chrX 145670922 145671402 -31302738 - LTR22B LTR ERVK -3 489 5 7974 169 266 39 chrX 145671402 145671771 -31302369 - L1PA16 LINE L1 -5415 1434 1150 3153 56 0 0 chrX 145671771 145672162 -31301978 + L1PA4 LINE L1 5762 6152 -3 7974 169 266 39 chrX 145672162 145672436 -31301704 - L1PA16 LINE L1 -5699 1150 1 204 40 0 0 chrX 145672793 145672818 -31301322 + (TA)n Simple_repeat Simple_repeat 1 25 0 1272 278 33 48 chrX 145672963 145673653 -31300487 - L2 LINE L2 0 3313 2631 375 319 59 37 chrX 145673725 145674175 -31299965 - HAL1b LINE L1 -613 735 273 216 0 0 0 chrX 145674175 145674199 -31299941 + (TC)n Simple_repeat Simple_repeat 2 25 0 7836 209 66 7 chrX 145674221 145675378 -31298762 + L1MC3 LINE L1 5845 7151 -634 216 0 0 0 chrX 145675378 145675402 -31298738 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 7836 209 66 7 chrX 145675402 145676059 -31298081 + L1MC3 LINE L1 7151 7767 -18 13739 142 35 25 chrX 145676631 145677685 -31296455 + Tigger1 DNA MER2_type 4 1046 -1372 1645 186 137 29 chrX 145677685 145677902 -31296238 - MSTA LTR MaLR 0 428 236 2057 133 0 3 chrX 145677902 145678196 -31295944 - AluSx SINE Alu -19 293 1 1645 186 137 29 chrX 145678196 145678364 -31295776 - MSTA LTR MaLR -192 236 1 13739 142 35 25 chrX 145678364 145679698 -31294442 + Tigger1 DNA MER2_type 1046 2415 -3 328 281 50 119 chrX 145679795 145680115 -31294025 - L1ME LINE L1 -304 5817 5520 13209 135 9 19 chrX 145681819 145683976 -31290164 + L1PA6 LINE L1 10 2144 -4002 16687 58 6 1 chrX 145683976 145686877 -31287263 + L1PA6 LINE L1 3247 6154 0 678 171 26 0 chrX 145686888 145687005 -31287135 + FLAM_C SINE Alu 5 124 -9 345 100 0 0 chrX 145687005 145687055 -31287085 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chrX 145688068 145688089 -31286051 + AT_rich Low_complexity Low_complexity 1 21 0 461 302 154 6 chrX 145688110 145688292 -31285848 - MIR SINE MIR -37 225 17 1956 137 91 26 chrX 145688383 145688725 -31285415 + THE1B LTR MaLR 1 364 0 1118 211 67 99 chrX 145688827 145689202 -31284938 + MLT1A1 LTR MaLR 1 363 -2 865 167 68 52 chrX 145689353 145689490 -31284650 - L1MA7 LINE L1 -30 6261 6117 2231 114 0 0 chrX 145689490 145689788 -31284352 - AluSg SINE Alu -12 298 1 865 167 68 52 chrX 145689788 145689902 -31284238 - L1MA7 LINE L1 -174 6117 6006 2225 101 26 10 chrX 145690752 145691060 -31283080 - AluSq SINE Alu 0 313 1 288 0 0 0 chrX 145691218 145691250 -31282890 + (TTTA)n Simple_repeat Simple_repeat 4 35 0 1715 139 4 0 chrX 145691250 145691501 -31282639 - AluSx SINE Alu -32 280 29 1554 150 56 21 chrX 145692121 145692407 -31281733 + AluSx SINE Alu 1 296 -16 2710 217 32 6 chrX 145692538 145693159 -31280981 - L1MB7 LINE L1 -132 6052 5416 747 0 0 0 chrX 145693192 145693275 -31280865 + (TTCTC)n Simple_repeat Simple_repeat 4 86 0 1853 121 11 7 chrX 145693277 145693429 -31280711 - AluSx SINE Alu -29 283 128 2543 14 0 0 chrX 145693429 145693722 -31280418 - L1PA3 LINE L1 -3 6152 5860 1853 121 11 7 chrX 145693722 145693851 -31280289 - AluSx SINE Alu -184 128 1 254 194 15 15 chrX 145693852 145693920 -31280220 - L1MB7 LINE L1 -735 5427 5360 1281 285 61 44 chrX 145693922 145693938 -31280202 - L1M4 LINE L1 -3944 2881 2867 2259 179 24 14 chrX 145693938 145694362 -31279778 + MSTA LTR MaLR 1 428 0 1281 285 61 44 chrX 145694362 145695303 -31278837 - L1M4 LINE L1 -3958 2867 1941 445 271 29 43 chrX 145695287 145695494 -31278646 - L1M4 LINE L1 -5261 1281 1078 * 2442 38 0 0 chrX 145695642 145695935 -31278205 - L1PA3 LINE L1 -3 6152 5860 289 245 115 74 chrX 145696072 145696395 -31277745 - L2 LINE L2 -9 3304 2969 317 360 50 50 chrX 145696489 145696598 -31277542 - L2 LINE L2 -260 3053 2942 1716 215 62 8 chrX 145696598 145696998 -31277142 + MSTB LTR MaLR 1 422 -4 317 360 50 50 chrX 145696998 145697088 -31277052 - L2 LINE L2 -370 2943 2854 629 289 40 36 chrX 145697123 145697376 -31276764 - L2 LINE L2 -1506 1808 1555 2262 166 64 48 chrX 145697376 145697877 -31276263 - LTR22 LTR ERVK 0 509 1 23 0 0 0 chrX 145697960 145697983 -31276157 + AT_rich Low_complexity Low_complexity 1 23 0 413 336 7 15 chrX 145698006 145698143 -31275997 - L2 LINE L2 -246 3026 2891 297 224 53 79 chrX 145698451 145698603 -31275537 + MIR SINE MIR 115 262 0 2073 131 0 0 chrX 145699411 145699709 -31274431 + AluSx SINE Alu 1 298 -14 2083 97 36 19 chrX 145700668 145700976 -31273164 + AluSq SINE Alu 1 313 0 804 262 10 20 chrX 145700977 145701179 -31272961 - MER58A DNA MER1_type -23 201 2 951 297 77 24 chrX 145701212 145701632 -31272508 + MLT1J LTR MaLR 7 507 -4 715 168 17 34 chrX 145702343 145702522 -31271618 + L1MA7 LINE L1 6110 6285 -6 2048 270 77 26 chrX 145704632 145705591 -31268549 - L1M4 LINE L1 -1133 6432 5425 465 283 167 28 chrX 145705593 145705773 -31268367 - MER58A DNA MER1_type -1 223 19 301 295 96 7 chrX 145705810 145706091 -31268049 - L1M4 LINE L1 -2786 4779 4474 1036 157 5 5 chrX 145806092 145806283 -31167857 - L1M4 LINE L1 -4854 2711 2521 5235 253 18 1 chrX 145806285 145807705 -31166435 - L1 LINE L1 -821 5325 3882 2449 191 10 8 chrX 145807705 145808196 -31165944 + L1PA16 LINE L1 5665 6156 -10 5563 136 26 1 chrX 145808671 145809676 -31164464 + L1PB1 LINE L1 5118 6148 -3 504 302 83 18 chrX 145809829 145810167 -31163973 + L1MEc LINE L1 2051 2410 -3986 218 152 0 22 chrX 145810197 145810243 -31163897 + (TA)n Simple_repeat Simple_repeat 2 46 0 437 286 61 34 chrX 145810274 145810601 -31163539 + L1MEc LINE L1 2966 3309 -2906 2122 125 0 0 chrX 145810601 145810919 -31163221 + AluSq SINE Alu 1 318 0 437 286 61 34 chrX 145810919 145811002 -31163138 + L1MEc LINE L1 3309 3388 -2827 392 253 11 11 chrX 145811159 145811250 -31162890 + MER5A DNA MER1_type 14 104 -85 413 314 24 35 chrX 145811268 145811437 -31162703 + LTR16B LTR ERVL 10 176 -288 364 330 21 16 chrX 145811481 145811669 -31162471 + L1MEc LINE L1 3538 3726 -2489 420 309 22 44 chrX 145811669 145811850 -31162290 - LTR16B LTR ERVL -285 179 3 446 265 74 49 chrX 145813146 145813308 -31160832 - MIR3 SINE MIR -26 182 17 30 0 0 0 chrX 145814482 145814512 -31159628 + AT_rich Low_complexity Low_complexity 1 30 0 207 316 71 71 chrX 145815662 145815753 -31158387 - MER5A DNA MER1_type 0 189 96 387 293 17 50 chrX 145815753 145815934 -31158206 - MER5B DNA MER1_type 0 178 4 207 316 71 71 chrX 145815934 145815997 -31158143 - MER5A DNA MER1_type -92 97 35 191 333 83 46 chrX 145818129 145818237 -31155903 - MER5A DNA MER1_type -24 165 54 22 35 0 0 chrX 145818426 145818455 -31155685 + AT_rich Low_complexity Low_complexity 1 29 0 2006 21 0 0 chrX 145818869 145819105 -31155035 + L1PA4 LINE L1 5912 6147 -8 3014 201 17 2 chrX 145819119 145819711 -31154429 - L1MB5 LINE L1 -23 6151 5551 4716 195 60 20 chrX 145819721 145821258 -31152882 - L1MC2 LINE L1 -10 6832 5232 238 255 0 0 chrX 145821287 145821338 -31152802 - L1PA12 LINE L1 -5349 2232 2182 332 313 0 0 chrX 145821572 145821668 -31152472 - L1PA12 LINE L1 -5402 2179 2084 780 384 29 20 chrX 145821772 145822324 -31151816 - L1PA12 LINE L1 -6229 1345 789 777 205 4 78 chrX 145822328 145822572 -31151568 - L1MC2 LINE L1 -3374 3270 3045 1202 223 60 0 chrX 145822582 145822689 -31151451 + AluJb SINE Alu 13 112 -200 195 69 0 0 chrX 145822689 145822718 -31151422 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1202 223 60 0 chrX 145822718 145822875 -31151265 + AluJb SINE Alu 112 293 -19 636 282 12 8 chrX 145822880 145823128 -31151012 - L1MC2 LINE L1 -3593 3051 2803 448 205 62 9 chrX 145823122 145823234 -31150906 - L1MC2 LINE L1 -7 6337 6220 * 12815 194 24 11 chrX 145823244 145827566 -31146574 - L1PB2 LINE L1 0 6867 2426 563 266 113 75 chrX 145827666 145828080 -31146060 - L1MC2 LINE L1 -5505 1037 608 283 241 0 0 chrX 145828262 145828320 -31145820 - LTR40a LTR ERVL -461 58 1 297 293 33 85 chrX 145828554 145828679 -31145461 + L1MEd LINE L1 1018 1148 -1342 2268 102 3 0 chrX 145828679 145828982 -31145158 + AluSg SINE Alu 1 304 -6 297 293 33 85 chrX 145828982 145829334 -31144806 + L1MEd LINE L1 1148 1571 -919 2014 104 82 25 chrX 145829352 145829707 -31144433 - THE1C LTR MaLR 0 375 1 278 285 42 42 chrX 145829837 145829981 -31144159 + L1MEc LINE L1 59 202 -6194 1754 128 15 70 chrX 145830177 145830505 -31143635 - AluSx SINE Alu -2 310 1 501 275 52 13 chrX 145830807 145831514 -31142626 + L1MEc LINE L1 692 1559 -4837 235 200 0 0 chrX 145831576 145831611 -31142529 - MER81 DNA DNA -79 35 1 376 258 112 25 chrX 145831706 145831994 -31142146 + L1 LINE L1 1537 1940 -4456 325 217 0 0 chrX 145832100 145832169 -31141971 - Charlie1b DNA MER1_type -9 514 446 321 206 0 0 chrX 145832172 145832245 -31141895 + L1 LINE L1 5681 5753 -1812 1118 159 0 26 chrX 145832250 145832445 -31141695 - AluJo SINE Alu -36 276 87 881 233 12 8 chrX 145832445 145832690 -31141450 + L1 LINE L1 5736 5981 -1584 6280 151 61 7 chrX 145832700 145833800 -31140340 + L1PB1 LINE L1 1 1159 -5704 13194 214 28 11 chrX 145833804 145834669 -31139471 + L1PB1 LINE L1 1292 2141 -4726 1921 163 10 3 chrX 145834669 145834975 -31139165 + AluSx SINE Alu 3 310 -2 13194 214 28 11 chrX 145834975 145835978 -31138162 + L1PB1 LINE L1 2141 3125 -3742 2044 150 55 3 chrX 145835978 145836324 -31137816 - THE1B LTR MaLR 0 364 1 13194 214 28 11 chrX 145836324 145837467 -31136673 + L1PB1 LINE L1 3125 4247 -2620 186 43 0 0 chrX 145837467 145837490 -31136650 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13194 214 28 11 chrX 145837490 145839464 -31134676 + L1PB1 LINE L1 4247 6411 -456 658 188 16 0 chrX 145839564 145839692 -31134448 + L1PB1 LINE L1 6676 6805 -62 807 124 0 0 chrX 145839692 145839809 -31134331 + L1PB1 LINE L1 6029 6149 -2 5453 133 8 22 chrX 145839842 145840390 -31133750 + L1PA16 LINE L1 4549 5103 -1063 1855 168 43 27 chrX 145840390 145840759 -31133381 + THE1C LTR MaLR 1 375 0 5453 133 8 22 chrX 145840759 145840999 -31133141 + L1PA16 LINE L1 5103 5345 -821 1557 201 17 0 chrX 145840999 145841292 -31132848 + AluSx SINE Alu 2 299 -13 5453 133 8 22 chrX 145841292 145842130 -31132010 + L1PA16 LINE L1 5345 6165 -1 1426 226 88 16 chrX 145842133 145842563 -31131577 - Charlie1b DNA MER1_type -62 461 1 360 268 70 17 chrX 145842637 145842884 -31131256 + L1MCa LINE L1 2326 2587 -3839 876 269 47 4 chrX 145842901 145843180 -31130960 + L1ME3 LINE L1 5840 6130 -32 21 57 0 0 chrX 145843185 145843220 -31130920 + AT_rich Low_complexity Low_complexity 1 35 0 7602 19 3 2 chrX 145843722 145844622 -31129518 + L1PA3 LINE L1 5254 6154 -1 10362 190 27 7 chrX 145844623 145847986 -31126154 + L1MA2 LINE L1 2872 6304 0 235 228 40 30 chrX 145847991 145848092 -31126048 - L1M4 LINE L1 -1053 5093 4992 * 7133 52 1 1 chrX 145848088 145848979 -31125161 - L1PA7 LINE L1 -5 6149 5259 2462 244 35 16 chrX 145848981 145849793 -31124347 - L1M4 LINE L1 -1146 5000 4174 5033 149 21 5 chrX 145849797 145851215 -31122925 - L1PA14 LINE L1 -4 6157 4739 11052 144 11 17 chrX 145851218 145853979 -31120161 - L1PA10 LINE L1 -11 6157 3409 966 198 8 39 chrX 145854086 145854344 -31119796 + L1MB7 LINE L1 5657 5906 -272 1795 198 45 5 chrX 145854345 145854745 -31119395 - L1PB4 LINE L1 -1 6155 5740 660 251 0 6 chrX 145854760 145854927 -31119213 + L1MB7 LINE L1 6010 6175 -9 885 272 92 4 chrX 145855901 145856140 -31118000 + MIR SINE MIR 3 262 0 5934 117 42 4 chrX 145857074 145858380 -31115760 - L1PA11 LINE L1 -4 6170 4839 935 236 104 29 chrX 145858390 145858660 -31115480 + MER61C LTR ERV1 18 404 -30 3705 164 66 52 chrX 145858666 145859494 -31114646 + MER61C-int LTR ERV1 2 841 -4376 8595 106 26 39 chrX 145859495 145861238 -31112902 + MER61C-int LTR ERV1 960 2776 -2441 245 170 0 21 chrX 145861238 145861285 -31112855 + L1P LINE L1 3547 3592 -2554 10295 183 29 11 chrX 145861392 145862845 -31111295 + L1M1 LINE L1 1940 3365 -4200 348 24 0 0 chrX 145862845 145862886 -31111254 + (CA)n Simple_repeat Simple_repeat 2 42 0 10295 183 29 11 chrX 145862886 145863809 -31110331 + L1M1 LINE L1 3365 4270 -3295 2267 88 0 0 chrX 145863809 145864115 -31110025 + AluSx SINE Alu 1 306 0 10295 183 29 11 chrX 145864115 145865846 -31108294 + L1M1 LINE L1 4270 6126 -1439 1715 250 44 34 chrX 145865949 145866606 -31107534 - L1M4 LINE L1 -838 5308 4645 4658 189 63 4 chrX 145866620 145868425 -31105715 - L1MA6 LINE L1 0 7321 5408 677 141 141 0 chrX 145868454 145868466 -31105674 - L1MA10 LINE L1 -5 6329 6318 533 245 318 4 chrX 145868466 145868727 -31105413 - L1ME2 LINE L1 -9 6155 5813 18520 186 19 20 chrX 145868897 145870372 -31103768 + L1MA2 LINE L1 16 1490 -6233 4607 28 0 4 chrX 145870372 145870915 -31103225 - L1PA3 LINE L1 0 6155 5615 18520 186 19 20 chrX 145870915 145876686 -31097454 + L1MA2 LINE L1 1490 7268 -455 7834 218 41 91 chrX 145876786 145876928 -31097212 - L1MA6 LINE L1 -2005 5162 5014 297 0 0 0 chrX 145876928 145876961 -31097179 + (TG)n Simple_repeat Simple_repeat 2 34 0 7834 218 41 91 chrX 145876961 145882549 -31091591 - L1MA6 LINE L1 -2153 5014 3 303 259 86 37 chrX 145882550 145882712 -31091428 - L1M4 LINE L1 -1520 4626 4457 2049 108 0 34 chrX 145882740 145883037 -31091103 + AluSg SINE Alu 11 297 -13 747 164 50 0 chrX 145883111 145883270 -31090870 - L1MA7 LINE L1 0 6291 6125 919 176 0 27 chrX 145883274 145883462 -31090678 + L1MA7 LINE L1 5946 6128 -163 303 93 0 0 chrX 145883742 145883785 -31090355 + (TA)n Simple_repeat Simple_repeat 1 43 0 276 210 89 57 chrX 145883879 145884036 -31090104 - L1M LINE L1 -878 5419 5258 300 305 62 22 chrX 145884046 145884493 -31089647 - L1MEc LINE L1 -2971 3244 2728 251 234 96 48 chrX 145884785 145884952 -31089188 - L1MEc LINE L1 -3992 2404 2230 3136 116 0 0 chrX 145885049 145885508 -31088632 + L1P5 LINE L1 5333 5791 -360 297 206 0 72 chrX 145885511 145885608 -31088532 + L1MC4 LINE L1 6614 6703 -1339 23 33 0 0 chrX 145885686 145885716 -31088424 + AT_rich Low_complexity Low_complexity 1 30 0 983 197 0 165 chrX 145885820 145886099 -31088041 - MER8 DNA MER2_type 0 239 7 24 0 0 0 chrX 145888597 145888621 -31085519 + AT_rich Low_complexity Low_complexity 1 24 0 2201 129 116 10 chrX 145888646 145889033 -31085107 + MSTA LTR MaLR 1 428 0 1067 284 94 7 chrX 145889322 145890148 -31083992 - L1ME LINE L1 -537 5625 4729 1807 243 56 49 chrX 145890256 145890808 -31083332 + MER68 LTR ERV1 1 556 -6 211 337 12 24 chrX 145891024 145891107 -31083033 + L3 LINE CR1 1488 1569 -8 300 111 0 0 chrX 145891681 145891726 -31082414 + (CA)n Simple_repeat Simple_repeat 1 45 0 6295 154 18 6 chrX 145892561 145893995 -31080145 + L1MA1 LINE L1 4855 6302 0 2224 209 94 64 chrX 145893996 145894952 -31079188 + L1ME2 LINE L1 5173 6151 -13 1030 277 105 58 chrX 145895211 145895735 -31078405 + L2 LINE L2 2761 3313 0 470 305 67 29 chrX 145895936 145896146 -31077994 + L3 LINE CR1 1245 1462 -115 515 305 82 17 chrX 145896160 145896393 -31077747 + MIR SINE MIR 4 251 -11 225 312 65 0 chrX 145896394 145896471 -31077669 + L3 LINE CR1 1495 1576 -1 8212 65 1 1 chrX 145898746 145900190 -31073950 - L1P2 LINE L1 -422 5732 4289 2499 167 7 11 chrX 145900444 145900881 -31073259 - L1MA8 LINE L1 -194 6097 5663 739 161 84 0 chrX 145900881 145901032 -31073108 + L1MA8 LINE L1 6118 6285 -6 858 182 23 11 chrX 145901653 145901829 -31072311 - MER101B LTR ERV1 -392 178 1 4212 154 102 36 chrX 145902260 145903126 -31071014 - MER49 LTR ERV1 0 923 1 816 138 7 0 chrX 145903569 145903707 -31070433 - L1PB1 LINE L1 -1 6150 6012 1146 133 17 0 chrX 145903891 145904071 -31070069 - L1PB1 LINE L1 -17 6134 5952 204 40 0 0 chrX 145904374 145904399 -31069741 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1475 60 0 0 chrX 145904399 145904584 -31069556 - HERVL-A2 LTR ERVL -5305 349 165 455 108 0 0 chrX 145904582 145904647 -31069493 + HERVL LTR ERVL 99 163 -5491 * 398 61 0 0 chrX 145904658 145904707 -31069433 + HERVL LTR ERVL 70 118 -5536 * 1073 70 57 32 chrX 145904697 145904854 -31069286 - HERVL-A2 LTR ERVL -5493 161 1 2295 121 3 0 chrX 145904854 145905184 -31068956 - MLT2A2 LTR ERVL 0 453 123 21 57 0 0 chrX 145905715 145905750 -31068390 + AT_rich Low_complexity Low_complexity 1 35 0 1121 141 11 0 chrX 145905751 145905936 -31068204 - L1PB1 LINE L1 -6 6145 5959 5966 60 20 11 chrX 145905938 145906287 -31067853 - L1PA8 LINE L1 0 6172 5828 2336 56 7 7 chrX 145906287 145906589 -31067551 - AluY SINE Alu -9 302 1 5966 60 20 11 chrX 145906589 145907026 -31067114 - L1PA8 LINE L1 -344 5828 5379 16964 39 2 14 chrX 145907026 145909893 -31064247 + L1PA4 LINE L1 3293 6147 -8 419 232 15 67 chrX 145910133 145910447 -31063693 - MER67D LTR ERV1 -14 529 273 2188 178 10 2 chrX 145910448 145910846 -31063294 - MER57A LTR ERV1 0 403 3 1082 150 34 21 chrX 145910854 145911087 -31063053 - MER57A-int LTR ERV1 -19 7518 7283 3240 218 10 0 chrX 146011088 146011886 -30962254 - L1 LINE L1 -2712 4853 4048 357 207 0 0 chrX 146011890 146011972 -30962168 + (TA)n Simple_repeat Simple_repeat 2 83 0 247 231 0 44 chrX 146011975 146012066 -30962074 + L1MC4 LINE L1 6615 6701 -1341 14867 176 26 18 chrX 146012081 146015030 -30959110 - L1 LINE L1 -4586 2979 8 270 56 0 0 chrX 146015226 146015262 -30958878 + (TG)n Simple_repeat Simple_repeat 2 37 0 447 226 74 16 chrX 146016339 146016595 -30957545 + L1MD2 LINE L1 6027 6346 -13 641 310 59 78 chrX 146016865 146017407 -30956733 - L2 LINE L2 0 3313 2784 2236 143 55 53 chrX 146017442 146017475 -30956665 + MER4E LTR ERV1 1 32 -734 2597 3 0 0 chrX 146017475 146017793 -30956347 + AluYa5 SINE Alu 1 318 0 2236 143 55 53 chrX 146017793 146018172 -30955968 + MER4E LTR ERV1 32 569 -197 1922 124 0 4 chrX 146018172 146018446 -30955694 - AluSc SINE Alu 0 309 37 2236 143 55 53 chrX 146018446 146018645 -30955495 + MER4E LTR ERV1 569 766 0 23 33 0 0 chrX 146018734 146018764 -30955376 + AT_rich Low_complexity Low_complexity 1 30 0 2148 136 30 22 chrX 146018928 146019289 -30954851 + THE1B LTR MaLR 1 364 0 2305 99 0 10 chrX 146019435 146020002 -30954138 - MER51A LTR ERV1 0 634 3 252 302 36 50 chrX 146020067 146020206 -30953934 - L2 LINE L2 -18 3295 3159 323 281 111 27 chrX 146020928 146021114 -30953026 + MIR SINE MIR 4 206 -56 1056 210 150 3 chrX 146021125 146021425 -30952715 + MER2 DNA MER2_type 2 345 0 1391 203 33 16 chrX 146021762 146022068 -30952072 - AluJo SINE Alu -1 311 1 409 269 53 41 chrX 146022415 146022586 -30951554 - MIR SINE MIR -14 248 76 3059 150 17 0 chrX 146022839 146023366 -30950774 - L1PA16 LINE L1 -108 6058 5523 2353 135 8 6 chrX 146023776 146024139 -30950001 - THE1B LTR MaLR 0 364 1 10093 107 35 44 chrX 146024139 146025733 -30948407 - THE1B-int LTR MaLR 0 1580 1 2680 104 0 0 chrX 146025733 146026097 -30948043 - THE1B LTR MaLR 0 364 1 511 378 62 9 chrX 146026363 146026797 -30947343 + L2 LINE L2 1716 2172 -1142 2608 111 1 14 chrX 146026838 146027385 -30946755 - MER4A LTR ERV1 0 664 1 25 51 0 0 chrX 146027686 146027725 -30946415 + AT_rich Low_complexity Low_complexity 1 39 0 464 370 21 11 chrX 146027871 146028155 -30945985 - L2 LINE L2 -1279 2035 1749 311 279 0 12 chrX 146028371 146028457 -30945683 - L2 LINE L2 -3 3269 3185 22 35 0 0 chrX 146029028 146029057 -30945083 + AT_rich Low_complexity Low_complexity 1 29 0 3181 120 28 42 chrX 146029327 146029585 -30944555 + MER34B LTR ERV1 1 261 -304 2512 64 0 0 chrX 146029585 146029883 -30944257 + AluY SINE Alu 5 302 -9 3181 120 28 42 chrX 146029883 146030197 -30943943 + MER34B LTR ERV1 261 565 0 571 120 0 20 chrX 146030799 146030899 -30943241 + MER4A LTR ERV1 1 98 -566 717 110 66 31 chrX 146030899 146031080 -30943060 + MER4A LTR ERV1 261 506 -158 1977 216 123 33 chrX 146031089 146031754 -30942386 + MER50 LTR ERV1 10 734 0 1057 112 0 12 chrX 146031754 146031915 -30942225 + MER4A LTR ERV1 506 664 0 2676 109 170 14 chrX 146031917 146032404 -30941736 + MER50-int LTR ERV1 1 563 -6035 328 127 0 56 chrX 146032465 146032536 -30941604 + MER50-int LTR ERV1 743 809 -5789 1386 231 55 0 chrX 146032601 146032908 -30941232 + MER50-int LTR ERV1 1845 2168 -4163 1721 138 4 4 chrX 146032949 146033225 -30940915 + MER50-int LTR ERV1 198 473 -6285 5147 109 93 121 chrX 146033228 146034810 -30939330 + pTR5 LTR ERV1 743 2438 0 1998 152 28 33 chrX 146034810 146035475 -30938665 + MER50-int LTR ERV1 469 1185 -5573 3848 93 74 17 chrX 146035488 146036187 -30937953 + MER50-int LTR ERV1 1756 2494 -4104 1100 198 62 0 chrX 146036187 146036430 -30937710 - LTR8 LTR ERV1 -433 258 1 3565 146 61 36 chrX 146036430 146037347 -30936793 + MER4A-int LTR ERV1 2737 3676 -2922 4444 137 50 19 chrX 146037347 146038221 -30935919 + MER4A-int LTR ERV1 3817 4717 -1881 21 0 0 0 chrX 146038229 146038250 -30935890 + AT_rich Low_complexity Low_complexity 1 21 0 6528 15 0 0 chrX 146038250 146039030 -30935110 - L1PA2 LINE L1 0 6155 5376 10167 125 38 15 chrX 146039030 146040841 -30933299 + MER4A-int LTR ERV1 4747 6598 0 601 115 0 10 chrX 146040845 146040941 -30933199 + MER4A LTR ERV1 4 98 -566 1479 132 50 24 chrX 146040941 146041269 -30932871 + MER4A LTR ERV1 261 664 0 216 0 0 0 chrX 146042104 146042128 -30932012 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1109 297 40 27 chrX 146043840 146045125 -30929015 + L1ME2 LINE L1 1440 2704 -3511 1650 135 117 39 chrX 146045125 146045459 -30928681 - THE1B LTR MaLR -1 363 4 1109 297 40 27 chrX 146045459 146045642 -30928498 + L1ME2 LINE L1 2704 2883 -3332 717 222 113 20 chrX 146045639 146045941 -30928199 + L1ME2 LINE L1 2819 3148 -3067 * 380 296 136 39 chrX 146045941 146046198 -30927942 + L1MCc LINE L1 316 597 -5826 944 259 105 31 chrX 146046293 146046713 -30927427 + L1MCc LINE L1 799 1249 -5174 567 217 147 0 chrX 146046790 146046933 -30927207 + MER67B LTR ERV1 498 661 0 262 242 44 11 chrX 146046933 146047024 -30927116 + L1ME2 LINE L1 5272 5365 -850 188 163 0 20 chrX 146047024 146047073 -30927067 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 2152 259 48 32 chrX 146047078 146047317 -30926823 + L1ME2 LINE L1 5437 5671 -562 2322 166 24 7 chrX 146047317 146047738 -30926402 - MSTB1 LTR MaLR 0 432 5 2152 259 48 32 chrX 146047738 146048248 -30925892 + L1ME2 LINE L1 5671 6198 -35 21 0 0 0 chrX 146048267 146048288 -30925852 + AT_rich Low_complexity Low_complexity 1 21 0 525 310 109 0 chrX 146048887 146049061 -30925079 - MIR SINE MIR -31 231 39 219 365 86 40 chrX 146049358 146049580 -30924560 - L2 LINE L2 -233 3039 2808 812 263 17 0 chrX 146050826 146051005 -30923135 + MER5A DNA MER1_type 2 183 -6 538 276 61 124 chrX 146051641 146052131 -30922009 - L2 LINE L2 0 3272 2814 391 260 74 31 chrX 146052882 146053075 -30921065 - MLT1J LTR MaLR -331 180 12 198 171 0 0 chrX 146053898 146053939 -30920201 + (AAATG)n Simple_repeat Simple_repeat 5 45 0 182 174 22 0 chrX 146054540 146054586 -30919554 + (TA)n Simple_repeat Simple_repeat 2 48 0 320 215 0 0 chrX 146054661 146054726 -30919414 - L1PA16 LINE L1 0 6166 6102 * 3884 188 23 6 chrX 146054725 146055769 -30918371 - L1P4 LINE L1 -588 5577 4525 359 244 71 29 chrX 146055766 146055954 -30918186 + L1P LINE L1 2724 2918 -3228 * 6887 239 10 5 chrX 146055937 146057653 -30916487 + L1P LINE L1 2760 4484 -1662 1005 174 28 19 chrX 146058010 146058223 -30915917 + L1MA4A LINE L1 5937 6151 -152 275 282 59 0 chrX 146058227 146058312 -30915828 - Charlie1 DNA MER1_type -280 2481 2392 2739 109 70 2 chrX 146058334 146058776 -30915364 - L1MA1 LINE L1 0 6302 5831 208 364 103 15 chrX 146058781 146058976 -30915164 - L2 LINE L2 -127 3186 2975 357 286 48 0 chrX 146059137 146059221 -30914919 + L2 LINE L2 3169 3256 -16 536 174 20 0 chrX 146060263 146060361 -30913779 - L1PA15 LINE L1 -171 5994 5895 835 171 61 6 chrX 146060362 146060526 -30913614 + L1PA15 LINE L1 5993 6165 0 375 244 115 35 chrX 146060834 146061034 -30913106 + MIR SINE MIR 5 212 -50 265 285 92 15 chrX 146061203 146061333 -30912807 - L2 LINE L2 -7 3306 3167 296 217 33 0 chrX 146061621 146061681 -30912459 - MIR SINE MIR -152 110 49 245 278 61 28 chrX 146061723 146061903 -30912237 - L1ME LINE L1 -238 5883 5698 555 287 39 8 chrX 146061907 146062036 -30912104 - L2 LINE L2 -4 3268 3136 2947 215 91 14 chrX 146062119 146063076 -30911064 - L1MB7 LINE L1 -55 7548 6516 * 4797 208 45 11 chrX 146063069 146064563 -30909577 - L1MB7 LINE L1 -2619 4946 3393 381 273 107 7 chrX 146064678 146064828 -30909312 + MER103 DNA DNA 1 165 -1 2416 55 0 26 chrX 146065392 146065703 -30908437 + AluY SINE Alu 1 303 -8 365 358 25 60 chrX 146067007 146067050 -30907090 - L2 LINE L2 -6 3266 3223 270 0 0 0 chrX 146067050 146067080 -30907060 + (GA)n Simple_repeat Simple_repeat 2 31 0 365 358 25 60 chrX 146067080 146067321 -30906819 - L2 LINE L2 -49 3223 2992 1373 287 98 65 chrX 146067400 146068373 -30905767 + L2 LINE L2 2230 3230 -83 435 330 69 21 chrX 146068500 146068833 -30905307 + L1ME LINE L1 5028 5376 -770 527 301 38 72 chrX 146068979 146069398 -30904742 + L1ME LINE L1 5386 5790 -374 210 71 0 0 chrX 146069575 146069603 -30904537 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 676 320 44 22 chrX 146069678 146069997 -30904143 + L1MC/D LINE L1 193 518 -5905 602 328 15 0 chrX 146070298 146070499 -30903641 + L1MC/D LINE L1 871 1074 -5349 1413 267 42 31 chrX 146070525 146071111 -30903029 + L1MC/D LINE L1 2019 2800 -4322 18370 184 10 10 chrX 146071212 146074831 -30899309 + L1PA14 LINE L1 1573 5191 -955 1468 161 0 0 chrX 146074831 146075071 -30899069 + L1PA14 LINE L1 5912 6159 -2 347 259 109 0 chrX 146075091 146075238 -30898902 - L1M4 LINE L1 -3747 2399 2237 1129 286 88 44 chrX 146075288 146076333 -30897807 + L1MC/D LINE L1 4036 5126 -1815 237 65 0 0 chrX 146076353 146076384 -30897756 + (CA)n Simple_repeat Simple_repeat 1 31 0 563 256 50 5 chrX 146076587 146076786 -30897354 + L1ME LINE L1 2677 2884 -3262 244 298 24 0 chrX 146076794 146076878 -30897262 + L1ME LINE L1 2937 3022 -3124 * 1483 271 104 48 chrX 146076873 146078110 -30896030 - L1M4c LINE L1 -3657 2725 1331 605 256 71 63 chrX 146078103 146078372 -30895768 + L1MC/D LINE L1 6280 6550 -2030 * 760 265 57 28 chrX 146078377 146078814 -30895326 + L1ME LINE L1 3916 4365 -1781 298 173 0 0 chrX 146078836 146078888 -30895252 - MER57A LTR ERV1 -25 378 327 1732 203 26 13 chrX 146078888 146079272 -30894868 - L1 LINE L1 -2237 3909 3521 349 329 54 6 chrX 146079311 146079478 -30894662 + L1ME LINE L1 4901 5075 -1071 1714 185 0 7 chrX 146079679 146079982 -30894158 + AluSx SINE Alu 1 301 -11 409 316 48 29 chrX 146079984 146080256 -30893884 + L1ME LINE L1 5330 5606 -558 1693 221 69 45 chrX 146080269 146080775 -30893365 + MLT2B1 LTR ERVL 3 520 0 300 302 97 59 chrX 146082788 146083159 -30890981 + MLT1H LTR MaLR 60 444 -105 362 259 27 9 chrX 146083323 146083435 -30890705 + MIR SINE MIR 91 204 -58 401 242 62 103 chrX 146084320 146084717 -30889423 - MLT1H LTR MaLR -27 528 26 195 303 28 95 chrX 146084868 146085079 -30889061 - MIR SINE MIR -46 216 20 280 348 76 0 chrX 146085808 146085900 -30888240 - L2 LINE L2 -18 3254 3156 446 138 0 0 chrX 146086250 146086341 -30887799 + AluS SINE Alu 224 314 0 5138 163 23 17 chrX 146086718 146087972 -30886168 - L1PB4 LINE L1 -5 6151 4895 995 251 130 14 chrX 146087981 146088411 -30885729 - Charlie7 DNA MER1_type -380 2232 1753 341 204 61 0 chrX 146088464 146088562 -30885578 - Charlie7 DNA MER1_type -2116 496 393 243 174 43 0 chrX 146088636 146088705 -30885435 - Charlie7 DNA MER1_type -2451 161 90 228 317 33 0 chrX 146089446 146089506 -30884634 - L2 LINE L2 -94 3178 3117 204 324 176 0 chrX 146090272 146090374 -30883766 + MIR SINE MIR 72 191 -71 21 0 0 0 chrX 146091934 146091955 -30882185 + AT_rich Low_complexity Low_complexity 1 21 0 2481 149 16 5 chrX 146092628 146093057 -30881083 - MER57B LTR ERV1 0 434 1 320 357 81 4 chrX 146093964 146094118 -30880022 - MIR SINE MIR -62 146 7 308 172 172 35 chrX 146094857 146094944 -30879196 - L1M4 LINE L1 -382 5802 5704 5830 63 156 68 chrX 146094948 146096028 -30878112 - MER11A LTR ERVK 0 1266 1 2454 246 39 28 chrX 146096089 146096728 -30877412 - L1M1 LINE L1 -6902 663 18 227 136 0 0 chrX 146096739 146096783 -30877357 + L1MD3 LINE L1 4622 4665 -1481 * 268 267 19 19 chrX 146096762 146096867 -30877273 + L1MD3 LINE L1 4924 5028 -1118 1268 219 170 15 chrX 146098257 146098700 -30875440 + L1MD3 LINE L1 5135 5191 -955 180 0 0 0 chrX 146098700 146098720 -30875420 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1268 219 170 15 chrX 146098720 146098973 -30875167 + L1MD3 LINE L1 5191 5403 -743 206 143 63 0 chrX 146099068 146099131 -30875009 + CT-rich Low_complexity Low_complexity 2 68 0 31 44 0 0 chrX 146099659 146099704 -30874436 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chrX 146100129 146100159 -30873981 + AT_rich Low_complexity Low_complexity 1 30 0 397 295 125 69 chrX 146100463 146100751 -30873389 - HAL1 LINE L1 -6 2501 2198 973 298 83 32 chrX 146101267 146101929 -30872211 - HAL1 LINE L1 -365 2142 1447 277 270 60 103 chrX 146102169 146102421 -30871719 + MLT1L LTR MaLR 370 610 -5 461 270 66 31 chrX 146102426 146102622 -30871518 - HAL1 LINE L1 -1057 1450 1248 243 345 54 18 chrX 146102667 146102835 -30871305 + L2 LINE L2 1616 1789 -1525 294 318 55 32 chrX 146102977 146103194 -30870946 + MIR SINE MIR 14 235 -27 349 279 16 38 chrX 146104670 146104869 -30869271 + (TA)n Simple_repeat Simple_repeat 1 234 -52 186 48 24 48 chrX 146104869 146104911 -30869229 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 349 279 16 38 chrX 146104911 146104963 -30869177 + (TA)n Simple_repeat Simple_repeat 234 286 0 871 215 60 36 chrX 146104995 146105672 -30868468 + L1ME2 LINE L1 5294 6150 -14 2307 87 3 0 chrX 146105717 146106015 -30868125 + AluSc SINE Alu 1 299 -10 309 240 100 0 chrX 146106074 146106174 -30867966 - L2 LINE L2 -1225 2089 1980 1046 126 0 0 chrX 146106211 146106384 -30867756 + AluSc SINE Alu 140 309 0 645 292 54 4 chrX 146106425 146106665 -30867475 - L2 LINE L2 -1457 1857 1606 1964 134 21 0 chrX 146107041 146107332 -30866808 + MER84 LTR ERVI 211 507 0 3977 142 68 5 chrX 146107332 146107954 -30866186 + MER84-int LTR ERV1 1 661 -4293 5245 113 10 9 chrX 146107954 146108599 -30865541 + MER84-int LTR ERV1 4186 4829 -125 2436 115 11 0 chrX 146108599 146108948 -30865192 + THE1A LTR MaLR 3 355 0 11263 103 11 1 chrX 146108948 146110512 -30863628 + THE1A-int LTR MaLR 1 1580 0 2503 100 6 17 chrX 146110512 146110871 -30863269 + THE1A LTR MaLR 1 355 0 5245 113 10 9 chrX 146110871 146110991 -30863149 + MER84-int LTR ERV1 4828 4954 0 3093 172 4 0 chrX 146110991 146111496 -30862644 + MER84 LTR ERV1 1 507 0 13261 165 20 52 chrX 146111496 146111635 -30862505 + L1MA2 LINE L1 2027 2169 -5554 2410 141 3 3 chrX 146111635 146112010 -30862130 - THE1C LTR MaLR 0 375 1 13261 165 20 52 chrX 146112010 146115318 -30858822 + L1MA2 LINE L1 2169 5216 -2507 1815 173 3 7 chrX 146115318 146115625 -30858515 + AluJb SINE Alu 3 308 -4 13261 165 20 52 chrX 146115625 146118053 -30856087 + L1MA2 LINE L1 5216 7721 -2 1442 142 11 4 chrX 146118077 146118338 -30855802 + L1MA3 LINE L1 6043 6305 0 1999 274 26 46 chrX 146118345 146119245 -30854895 + L1MC/D LINE L1 3723 4604 -1542 657 254 82 9 chrX 146119248 146119468 -30854672 + L1MB5 LINE L1 5930 6165 -9 * 959 208 28 30 chrX 146119463 146119746 -30854394 + L1MC/D LINE L1 4989 5274 -951 4652 109 25 10 chrX 146119746 146120427 -30853713 - LTR8 LTR ERV1 0 691 1 959 208 28 30 chrX 146120427 146120636 -30853504 + L1MC/D LINE L1 5274 5482 -743 237 239 28 18 chrX 146120637 146120746 -30853394 + (TA)n Simple_repeat Simple_repeat 2 111 0 267 227 28 11 chrX 146120759 146120935 -30853205 + (TA)n Simple_repeat Simple_repeat 1 179 0 432 281 27 22 chrX 146120968 146121153 -30852987 - L1MEc LINE L1 -2422 4118 3933 1454 256 30 48 chrX 146121241 146121682 -30852458 + MLT1D LTR MaLR 1 433 -72 702 282 95 37 chrX 146121695 146122693 -30851447 - L1MEc LINE L1 -3661 2879 1573 3322 199 110 17 chrX 146122708 146123483 -30850657 - L1MC1 LINE L1 -6 6327 5481 2784 186 28 6 chrX 146123483 146124022 -30850118 - MLT1A1-int LTR MaLR -1183 552 2 669 190 30 0 chrX 146124023 146124150 -30849990 - MLT1A1 LTR MaLR 0 383 250 2486 62 3 0 chrX 146124451 146124756 -30849384 + AluY SINE Alu 1 306 -5 381 350 79 6 chrX 146125766 146125943 -30848197 - MIR SINE MIR -46 216 27 417 39 0 0 chrX 146126728 146126779 -30847361 + (CA)n Simple_repeat Simple_repeat 2 52 0 914 311 75 24 chrX 146126791 146127202 -30846938 + L1M4b LINE L1 24 455 -6404 1461 159 7 11 chrX 146127416 146127687 -30846453 - L1 LINE L1 -1324 4822 4553 5010 193 4 4 chrX 146127690 146128965 -30845175 + L1PA16 LINE L1 4876 6149 -17 28 48 0 0 chrX 146129380 146129422 -30844718 + AT_rich Low_complexity Low_complexity 1 42 0 470 308 39 66 chrX 146129516 146129821 -30844319 - MLT1J LTR MaLR -208 303 7 1517 200 72 75 chrX 146130361 146130732 -30843408 + MLT2D LTR ERVL 1 372 -42 378 0 0 0 chrX 146130732 146130774 -30843366 + (TG)n Simple_repeat Simple_repeat 2 43 0 1517 200 72 75 chrX 146130774 146130817 -30843323 + MLT2D LTR ERVL 372 414 0 377 336 140 73 chrX 146131979 146132294 -30841846 + L2 LINE L2 2864 3199 -73 273 119 0 0 chrX 146132423 146132465 -30841675 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 5099 99 9 37 chrX 146132853 146133695 -30840445 + L1MA2 LINE L1 5232 6049 -255 375 280 91 17 chrX 146134051 146134226 -30839914 + MLT1L LTR MaLR 81 268 -347 310 151 27 0 chrX 146134317 146134390 -30839750 + (TA)n Simple_repeat Simple_repeat 1 75 0 310 250 0 45 chrX 146134414 146134526 -30839614 + L1M4b LINE L1 1716 1822 -5138 287 264 0 0 chrX 146134559 146134631 -30839509 + L1M4b LINE L1 2480 2551 -4587 229 209 0 0 chrX 146135677 146135720 -30838420 - L3 LINE CR1 -8 1569 1527 225 83 0 0 chrX 146135720 146135756 -30838384 + (T)n Simple_repeat Simple_repeat 1 36 0 2139 137 5 39 chrX 146135776 146136164 -30837976 + THE1C LTR MaLR 1 375 0 530 284 85 18 chrX 146136240 146136445 -30837695 - MIR SINE MIR -29 233 19 246 353 108 0 chrX 146136594 146136733 -30837407 - L3 LINE CR1 -318 1259 1106 3859 177 55 32 chrX 146136870 146137827 -30836313 + MER11C LTR ERVK 1 1071 0 188 83 0 28 chrX 146138628 146138664 -30835476 + (TC)n Simple_repeat Simple_repeat 2 36 0 221 136 0 23 chrX 146138694 146138738 -30835402 + (CATA)n Simple_repeat Simple_repeat 4 46 0 795 253 85 20 chrX 146138948 146139241 -30834899 + L1ME1 LINE L1 4616 4927 -1219 * 1505 247 49 29 chrX 146139236 146139407 -30834733 + L1ME1 LINE L1 5396 5562 -604 2370 41 0 10 chrX 146139407 146139702 -30834438 + L1PA4 LINE L1 5864 6155 0 1505 247 49 29 chrX 146139702 146140243 -30833897 + L1ME1 LINE L1 5562 6162 -4 270 207 0 0 chrX 146140456 146140514 -30833626 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 295 82 0 chrX 146140837 146140898 -30833242 + MIR SINE MIR 119 184 -78 253 286 124 9 chrX 146141633 146141738 -30832402 + MIR SINE MIR 75 191 -71 37 39 0 0 chrX 146141739 146141790 -30832350 + AT_rich Low_complexity Low_complexity 1 51 0 188 250 21 0 chrX 146141822 146141870 -30832270 + L2 LINE L2 3257 3305 -8 314 248 83 60 chrX 146142287 146142420 -30831720 + L1MC4a LINE L1 7493 7628 -180 306 287 27 73 chrX 146142537 146142604 -30831536 + L1ME3 LINE L1 5838 5907 -255 2092 150 60 24 chrX 146142604 146143017 -30831123 + MSTA LTR MaLR 1 428 0 306 287 27 73 chrX 146143017 146143099 -30831041 + L1ME3 LINE L1 5907 5980 -182 317 263 99 70 chrX 146143126 146143297 -30830843 + L1MC5 LINE L1 7732 7907 -54 226 326 0 11 chrX 146143529 146143618 -30830522 - L1ME LINE L1 -227 5935 5848 220 283 33 0 chrX 146144260 146144320 -30829820 + L2 LINE L2 3239 3300 -13 5323 191 79 98 chrX 146145309 146147099 -30827041 + MER52A LTR ERV1 1 1755 0 366 23 0 0 chrX 146147116 146147159 -30826981 + (T)n Simple_repeat Simple_repeat 1 43 0 2011 160 0 3 chrX 146147421 146147728 -30826412 - AluJb SINE Alu -6 306 1 220 308 15 0 chrX 146147887 146147952 -30826188 - L2 LINE L2 -3 3269 3204 331 254 51 96 chrX 146148322 146148466 -30825674 - L1MDa LINE L1 -3737 2825 2676 15646 27 0 6 chrX 146148466 146151110 -30823030 - L1PA2 LINE L1 0 6155 3523 331 254 51 96 chrX 146151110 146151332 -30822808 - L1MDa LINE L1 -3886 2676 2461 682 92 107 30 chrX 146152731 146152766 -30821374 - L1MA9 LINE L1 -2 6310 6279 14420 140 19 11 chrX 146152766 146155163 -30818977 - Tigger1 DNA MER2_type -1 2417 1 682 92 107 30 chrX 146155163 146155258 -30818882 - L1MA9 LINE L1 -33 6279 6170 2242 114 0 9 chrX 146155294 146155609 -30818531 + AluSx SINE Alu 1 312 0 2195 105 0 0 chrX 146155624 146155919 -30818221 + AluSq SINE Alu 1 295 -18 25 0 0 0 chrX 146155937 146155962 -30818178 + AT_rich Low_complexity Low_complexity 1 25 0 1074 210 8 17 chrX 146156089 146156327 -30817813 + L1MC2 LINE L1 6002 6237 -107 240 109 0 22 chrX 146156330 146156376 -30817764 + L1MC2 LINE L1 6291 6335 -9 230 65 0 0 chrX 146156707 146156738 -30817402 + L1M4 LINE L1 81 111 -6431 22 0 0 0 chrX 146157190 146157212 -30816928 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chrX 146157656 146157692 -30816448 + AT_rich Low_complexity Low_complexity 1 36 0 249 352 0 0 chrX 146157945 146158016 -30816124 + MIR SINE MIR 36 106 -102 806 320 157 12 chrX 146158204 146158714 -30815426 + L2 LINE L2 1747 2330 -984 214 330 117 21 chrX 146158790 146158884 -30815256 + L2 LINE L2 3134 3236 -36 454 359 140 11 chrX 146158895 146159246 -30814894 + L2 LINE L2 2862 3257 -56 350 356 105 31 chrX 146159640 146160162 -30813978 - L2 LINE L2 -579 2735 2175 202 182 36 0 chrX 146160509 146160564 -30813576 + T-rich Low_complexity Low_complexity 2 58 0 2066 131 0 0 chrX 146160576 146160858 -30813282 - AluSx SINE Alu -30 282 1 9698 153 31 4 chrX 146160870 146163755 -30810385 - L1MA1 LINE L1 -3 6299 3336 1378 271 49 21 chrX 146213758 146214327 -30759813 + L1ME LINE L1 1041 1625 -4759 838 263 36 43 chrX 146214340 146214831 -30759309 + L1ME LINE L1 5326 5813 -589 1246 209 25 18 chrX 146214870 146215196 -30758944 - L1MA8 LINE L1 0 6291 5964 11599 210 35 21 chrX 146215296 146219287 -30754853 + L1PA13 LINE L1 3530 7566 -16 24 77 0 0 chrX 146219798 146219850 -30754290 + AT_rich Low_complexity Low_complexity 1 52 0 1244 123 19 19 chrX 146219880 146220188 -30753952 - LTR7 LTR ERV1 -96 354 1 1478 125 98 73 chrX 146220188 146220556 -30753584 + MER4-int LTR ERV1 2921 3297 -3301 9982 101 21 5 chrX 146220556 146222799 -30751341 + L1PA8A LINE L1 3826 6103 -28 209 32 0 32 chrX 146222805 146222836 -30751304 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 233 167 0 0 chrX 146222862 146222898 -30751242 + MSTD LTR MaLR 221 256 -140 * 255 149 0 219 chrX 146222867 146222981 -30751159 + MLT1A1 LTR MaLR 164 252 -113 3380 114 5 2 chrX 146225018 146225466 -30748674 + LTR2 LTR ERV1 1 449 0 27856 106 16 22 chrX 146226643 146230913 -30743227 - L1P LINE L1 -1887 4259 17 414 252 53 34 chrX 146230915 146231121 -30743019 + L1MEc LINE L1 1999 2208 -4188 2386 129 19 38 chrX 146232311 146232682 -30741458 + THE1B LTR MaLR 1 364 0 12044 108 5 4 chrX 146232682 146234261 -30739879 + THE1B-int LTR MaLR 1 1580 0 2333 119 27 43 chrX 146234261 146234631 -30739509 + THE1B LTR MaLR 1 364 0 320 332 76 43 chrX 146235069 146235280 -30738860 + L1M4b LINE L1 270 487 -6372 1695 250 85 25 chrX 146235294 146235451 -30738689 + L1M4b LINE L1 582 728 -6131 2378 144 0 15 chrX 146235451 146235792 -30738348 + MER1B DNA MER1_type 2 337 0 1695 250 85 25 chrX 146235792 146236186 -30737954 + L1M4b LINE L1 728 1166 -5693 819 168 0 15 chrX 146236189 146236320 -30737820 + FLAM_C SINE Alu 1 129 -14 996 236 74 60 chrX 146236337 146236740 -30737400 + L1M4b LINE L1 1155 1563 -5296 935 200 0 0 chrX 146236855 146237020 -30737120 + AluSg/x SINE Alu 122 286 -24 3494 186 9 7 chrX 146237027 146237119 -30737021 + L1 LINE L1 4547 4637 -1509 1544 149 6 90 chrX 146237119 146237442 -30736698 + AluJo SINE Alu 11 306 -6 3494 186 9 7 chrX 146237442 146238031 -30736109 + L1 LINE L1 4637 5229 -917 2752 139 26 18 chrX 146238249 146238702 -30735438 + LTR22A LTR ERVK 2 458 0 4979 123 43 19 chrX 146238704 146239494 -30734646 + HERVK22 LTR ERVK 3 811 -6026 3167 86 2 32 chrX 146239488 146239930 -30734210 + HERVK22 LTR ERVK 2328 2756 -4081 * 7919 124 6 8 chrX 146239923 146241237 -30732903 + HERVK22 LTR ERVK 3182 6837 0 2679 161 11 15 chrX 146241238 146241697 -30732443 + LTR22A LTR ERVK 2 458 0 2412 254 95 22 chrX 146242917 146244608 -30729532 + L1MB7 LINE L1 298 2131 -4828 285 231 64 0 chrX 146244729 146244807 -30729333 + L1MB7 LINE L1 2111 2193 -4766 1109 242 66 63 chrX 146244827 146244988 -30729152 + L1MB7 LINE L1 5901 6060 -917 2305 103 0 3 chrX 146244988 146245298 -30728842 + AluSc SINE Alu 1 309 0 1109 242 66 63 chrX 146245298 146245801 -30728339 + L1MB7 LINE L1 6060 6562 -415 283 278 10 0 chrX 146245849 146245946 -30728194 + CT-rich Low_complexity Low_complexity 1 98 0 217 167 21 0 chrX 146246396 146246444 -30727696 + A-rich Low_complexity Low_complexity 4 52 0 1853 244 88 41 chrX 146246743 146247020 -30727120 + L1ME1 LINE L1 5149 5411 -755 1192 22 15 0 chrX 146247020 146247154 -30726986 + L1PA4 LINE L1 6016 6151 -4 1853 244 88 41 chrX 146247154 146247798 -30726342 + L1ME1 LINE L1 5411 6109 -57 2338 96 0 10 chrX 146248176 146248479 -30725661 - AluSx SINE Alu -12 300 1 1203 258 31 23 chrX 146249307 146249698 -30724442 - L1ME3 LINE L1 -114 6048 5655 621 200 0 9 chrX 146249698 146249813 -30724327 + AluJo SINE Alu 35 148 -164 1343 236 14 20 chrX 146249886 146250234 -30723906 - MLT1A2 LTR MaLR 0 374 29 1924 250 0 0 chrX 146250264 146250664 -30723476 - MLT1A2-int LTR MaLR -7 1728 1329 665 256 44 34 chrX 146250663 146250819 -30723321 + L1MB7 LINE L1 6675 6837 -158 * 2208 72 35 0 chrX 146250819 146251109 -30723031 - AluSp SINE Alu -13 300 1 665 256 44 34 chrX 146251109 146251249 -30722891 + L1MB7 LINE L1 6837 6974 -21 427 256 135 8 chrX 146251447 146251580 -30722560 - MER50 LTR ERV1 -571 163 14 1787 121 19 0 chrX 146251913 146252170 -30721970 - AluSx SINE Alu -50 262 1 2030 111 57 6 chrX 146252323 146252656 -30721484 + MER4C LTR ERV1 116 465 0 207 0 0 0 chrX 146253108 146253131 -30721009 + (A)n Simple_repeat Simple_repeat 1 23 0 228 130 0 0 chrX 146253530 146253576 -30720564 + (CA)n Simple_repeat Simple_repeat 2 47 0 1701 176 88 51 chrX 146253868 146254243 -30719897 + MER61B LTR ERV1 1 389 -36 580 241 7 14 chrX 146254304 146254385 -30719755 + AluJo SINE Alu 54 135 -177 2055 136 7 3 chrX 146254385 146254686 -30719454 + AluSg SINE Alu 1 302 -8 580 241 7 14 chrX 146254686 146254745 -30719395 + AluJo SINE Alu 135 193 -119 1303 167 19 16 chrX 146254745 146255002 -30719138 - LTR4 LTR ERV1 0 596 339 665 146 8 16 chrX 146255305 146255428 -30718712 + AluJo SINE Alu 188 309 -3 237 164 109 0 chrX 146255826 146255881 -30718259 + MER4B LTR ERV1 5 65 -545 1848 134 148 33 chrX 146256097 146256463 -30717677 + MER4B LTR ERV1 1 408 -202 1229 101 0 6 chrX 146256452 146256621 -30717519 + MER4E LTR ERV1 598 765 -1 * 255 271 80 60 chrX 146256711 146256862 -30717278 + HAL1 LINE L1 1586 1739 -768 23 33 0 0 chrX 146256976 146257006 -30717134 + AT_rich Low_complexity Low_complexity 1 30 0 552 270 52 43 chrX 146257577 146257807 -30716333 - MER97b DNA MER1_type? -480 573 342 1913 207 25 61 chrX 146258077 146258714 -30715426 + L1MDb LINE L1 943 1556 -4987 1579 231 76 25 chrX 146258722 146258833 -30715307 + L1MDb LINE L1 1990 2094 -4446 3762 158 124 11 chrX 146258833 146259575 -30714565 - LTR1B LTR ERV1 0 826 1 1579 231 76 25 chrX 146259575 146260140 -30714000 + L1MDb LINE L1 2094 2697 -3843 357 236 21 131 chrX 146260153 146260390 -30713750 - L1MC4a LINE L1 -876 6932 6780 2152 137 132 5 chrX 146260515 146260895 -30713245 - MSTA LTR MaLR 0 428 1 21 89 0 0 chrX 146261157 146261213 -30712927 + AT_rich Low_complexity Low_complexity 1 56 0 25 0 0 0 chrX 146261238 146261263 -30712877 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 146261319 146261341 -30712799 + AT_rich Low_complexity Low_complexity 1 22 0 704 356 18 27 chrX 146261524 146261858 -30712282 + L1MA4 LINE L1 305 635 -5614 3344 253 98 27 chrX 146262550 146264158 -30709982 + L1MA4 LINE L1 539 2249 -4079 5310 225 43 5 chrX 146264259 146266273 -30707867 + L1MA4 LINE L1 4375 6478 -4 4712 52 48 0 chrX 146266487 146267089 -30707051 - L1PA8 LINE L1 -190 5982 5352 11596 211 27 10 chrX 146267091 146269729 -30704411 - L1P LINE L1 -1281 4865 2184 1081 159 0 0 chrX 146269728 146269891 -30704249 + L1PA12 LINE L1 197 359 -7222 * 1492 263 42 48 chrX 146269891 146270370 -30703770 + MLT2B3 LTR ERVL 73 548 -6 760 226 13 7 chrX 146270379 146270534 -30703606 - L1M3d LINE L1 -5733 158 3 417 287 114 51 chrX 146270784 146271021 -30703119 - MIR SINE MIR 0 262 11 217 219 0 0 chrX 146271888 146271929 -30702211 + (CAT)n Simple_repeat Simple_repeat 3 43 0 231 36 0 0 chrX 146272188 146272216 -30701924 + (TA)n Simple_repeat Simple_repeat 1 28 0 305 250 75 8 chrX 146273016 146273136 -30701004 + L1MCa LINE L1 1937 2064 -4362 * 317 322 0 0 chrX 146273073 146273163 -30700977 - L1MC4 LINE L1 -1339 6703 6614 * 320 287 23 0 chrX 146273156 146273243 -30700897 + L1MC4 LINE L1 6615 6703 -1339 321 167 0 0 chrX 146273804 146273829 -30700311 + GA-rich Low_complexity Low_complexity 1 25 -41 225 0 0 0 chrX 146273829 146273854 -30700286 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 167 0 0 chrX 146273854 146273894 -30700246 + GA-rich Low_complexity Low_complexity 24 66 0 563 108 59 0 chrX 146274559 146274661 -30699479 - L1MA9 LINE L1 -10 6302 6195 896 266 120 29 chrX 146274682 146274727 -30699413 + L1M4 LINE L1 4405 4444 -1702 1573 245 71 21 chrX 146274727 146275204 -30698936 + MLT1D LTR MaLR 1 501 -4 896 266 120 29 chrX 146275204 146275652 -30698488 + L1M4 LINE L1 4444 4963 -1183 180 0 0 0 chrX 146275652 146275672 -30698468 + (TA)n Simple_repeat Simple_repeat 2 21 0 896 266 120 29 chrX 146275672 146275767 -30698373 + L1M4 LINE L1 4963 5048 -1098 37 23 0 0 chrX 146275772 146275816 -30698324 + AT_rich Low_complexity Low_complexity 1 44 0 486 266 55 25 chrX 146275874 146276073 -30698067 + L1M4 LINE L1 5089 5293 -853 207 295 179 0 chrX 146276120 146276198 -30697942 + L2 LINE L2 3180 3271 -42 770 84 0 0 chrX 146276945 146277052 -30697088 - MSTA LTR MaLR -319 109 3 8103 192 42 7 chrX 146277056 146278614 -30695526 - MSTA-int LTR MaLR -2 1649 37 1947 129 90 6 chrX 146278614 146278946 -30695194 - MSTA LTR MaLR -68 360 1 246 197 33 0 chrX 146278946 146279007 -30695133 + L1M4 LINE L1 1470 1532 -4891 324 264 49 35 chrX 146279117 146279261 -30694879 + L1M4 LINE L1 2377 2522 -4600 544 141 30 10 chrX 146279278 146279377 -30694763 + MER4A LTR ERV1 1 101 -563 * 1395 164 13 91 chrX 146279370 146279749 -30694391 + MER4A LTR ERV1 257 664 0 1046 230 81 44 chrX 146279798 146280320 -30693820 + L1M4 LINE L1 2606 3146 -3976 1658 160 10 45 chrX 146280718 146281031 -30693109 - AluSx SINE Alu -10 302 1 1993 130 0 7 chrX 146281042 146281334 -30692806 - AluSq SINE Alu -23 290 1 3706 9 7 0 chrX 146281346 146281769 -30692371 - L1PA2 LINE L1 0 6155 5730 1526 6 0 6 chrX 146281769 146281942 -30692198 + L1PA2 LINE L1 5563 5734 -421 929 142 71 0 chrX 146282069 146282224 -30691916 + AluSg/x SINE Alu 132 297 -15 228 400 54 0 chrX 146282379 146282509 -30691631 + MER91C DNA MER1_type 3 139 -1 387 0 0 0 chrX 146283163 146283206 -30690934 + (CA)n Simple_repeat Simple_repeat 2 44 0 356 0 23 0 chrX 146283205 146283249 -30690891 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 543 112 103 0 chrX 146283903 146284010 -30690130 - L1MA9 LINE L1 0 6312 6195 1606 257 80 9 chrX 146284072 146284535 -30689605 + MLT1D LTR MaLR 1 496 -9 991 265 132 28 chrX 146284547 146285295 -30688845 + L1M4 LINE L1 5243 6068 -873 22 0 0 0 chrX 146285528 146285550 -30688590 + AT_rich Low_complexity Low_complexity 1 22 0 368 259 27 9 chrX 146286201 146286313 -30687827 - MIR SINE MIR -58 204 91 825 268 67 36 chrX 146287285 146287758 -30686382 + L1M4 LINE L1 329 880 -5975 1341 194 27 13 chrX 146287817 146288126 -30686014 - L1M4 LINE L1 -613 5561 5250 2283 102 0 10 chrX 146288126 146288429 -30685711 + AluSx SINE Alu 1 300 -12 1341 194 27 13 chrX 146288429 146288546 -30685594 - L1M4 LINE L1 -924 5250 5136 1226 246 22 25 chrX 146288599 146288965 -30685175 + MLT1A1 LTR MaLR 1 365 0 245 260 41 0 chrX 146289033 146289106 -30685034 + L1M4 LINE L1 6231 6306 -673 1429 180 30 14 chrX 146289137 146289432 -30684708 + L1M4 LINE L1 6295 6594 -385 185 286 0 0 chrX 146289563 146289605 -30684535 + MIR SINE MIR 218 259 -3 246 227 0 0 chrX 146290408 146290452 -30683688 + L1M4 LINE L1 1173 1216 -5643 44472 33 5 1 chrX 146290722 146296884 -30677256 + L1PA3 LINE L1 7 6155 0 2018 281 50 34 chrX 146297062 146298258 -30675882 + L1M4 LINE L1 1221 2495 -4462 699 219 99 0 chrX 146298300 146298492 -30675648 + L1M4 LINE L1 3048 3258 -3699 * 2408 160 46 0 chrX 146298487 146299091 -30675049 + L1M1 LINE L1 5081 5706 -599 361 341 110 42 chrX 146299398 146299753 -30674387 + MLT1G LTR MaLR 17 395 -195 404 271 77 24 chrX 146299841 146300011 -30674129 + MLT1G LTR MaLR 405 583 -7 979 279 51 3 chrX 146300051 146300384 -30673756 + L1MCb LINE L1 1 349 -5696 326 157 0 59 chrX 146300386 146300438 -30673702 + CT-rich Low_complexity Low_complexity 1 46 -50 2561 102 94 5 chrX 146300438 146300851 -30673289 - LTR7 LTR ERV1 0 450 1 326 157 0 59 chrX 146300851 146300900 -30673240 + CT-rich Low_complexity Low_complexity 46 96 0 1110 222 27 0 chrX 146300982 146301207 -30672933 - MLT1C LTR MaLR -10 457 227 759 212 0 27 chrX 146301848 146301994 -30672146 + FAM SINE Alu 2 143 -42 180 0 0 0 chrX 146302566 146302586 -30671554 + (TG)n Simple_repeat Simple_repeat 2 21 0 860 253 112 28 chrX 146302620 146302847 -30671293 - L1MEc LINE L1 -2897 3318 3111 2519 112 6 8 chrX 146302847 146303212 -30670928 + THE1B LTR MaLR 1 364 0 860 253 112 28 chrX 146303212 146303850 -30670290 - L1MEc LINE L1 -3104 3111 2289 913 297 63 62 chrX 146303867 146304800 -30669340 - L1MEc LINE L1 -4273 2123 1190 824 320 92 31 chrX 146304881 146305491 -30668649 - L1M4 LINE L1 -1434 4712 4066 24 53 0 0 chrX 146305857 146305895 -30668245 + AT_rich Low_complexity Low_complexity 1 38 0 230 95 24 0 chrX 146306347 146306389 -30667751 + (TA)n Simple_repeat Simple_repeat 1 43 0 13600 197 23 9 chrX 146306624 146307489 -30666651 + L1PA13 LINE L1 520 1371 -5443 414 0 0 0 chrX 146307489 146307535 -30666605 + (CA)n Simple_repeat Simple_repeat 1 46 0 13600 197 23 9 chrX 146307535 146309474 -30664666 + L1PA13 LINE L1 1371 3280 -3534 288 0 0 0 chrX 146309474 146309506 -30664634 + (CA)n Simple_repeat Simple_repeat 1 32 0 13600 197 23 9 chrX 146309506 146312486 -30661654 + L1PA13 LINE L1 3280 6814 0 306 327 48 10 chrX 146312969 146313073 -30661067 - MIR3 SINE MIR -49 159 52 238 337 34 22 chrX 146313209 146313298 -30660842 + L2 LINE L2 2554 2643 -671 212 320 26 13 chrX 146314180 146314258 -30659882 + MIR SINE MIR 178 256 -6 351 0 0 0 chrX 146314819 146314858 -30659282 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 57 0 0 chrX 146315431 146315466 -30658674 + (A)n Simple_repeat Simple_repeat 1 35 0 195 100 0 0 chrX 146316205 146316235 -30657905 + (TC)n Simple_repeat Simple_repeat 2 31 0 744 268 68 19 chrX 146316766 146317087 -30657053 + L1M4 LINE L1 3904 4240 -1906 306 212 12 12 chrX 146317114 146317199 -30656941 + L1MA10 LINE L1 6250 6334 0 1669 263 85 35 chrX 146317307 146317851 -30656289 - MLT1E LTR MaLR -1 592 22 466 245 98 0 chrX 146317926 146318069 -30656071 + L1M4 LINE L1 3533 3689 -2457 729 78 72 0 chrX 146318070 146318236 -30655904 + (TA)n Simple_repeat Simple_repeat 1 178 0 1872 93 4 31 chrX 146319455 146319714 -30654426 + AluSp SINE Alu 1 252 -61 3660 213 36 52 chrX 146319907 146320973 -30653167 - L1MC3 LINE L1 -30 7755 6707 1054 129 42 10 chrX 146320981 146321207 -30652933 - L1PA16 LINE L1 -2 6164 5904 264 347 0 0 chrX 146321202 146321300 -30652840 - L1MC3 LINE L1 -1076 6709 6612 * 2428 163 7 43 chrX 146321300 146321737 -30652403 + MSTB1 LTR MaLR 1 421 -11 5139 219 41 57 chrX 146321737 146322885 -30651255 - L1MC3 LINE L1 -745 5401 4237 1852 136 0 21 chrX 146322885 146323172 -30650968 + AluSx SINE Alu 1 281 -31 5139 219 41 57 chrX 146323172 146323217 -30650923 - L1MC3 LINE L1 -1909 4237 4193 261 0 0 0 chrX 146323217 146323246 -30650894 + (TA)n Simple_repeat Simple_repeat 2 30 0 5139 219 41 57 chrX 146323246 146323522 -30650618 - L1MC3 LINE L1 -1953 4193 5170 1215 152 13 0 chrX 146323522 146323746 -30650394 - L1MA4 LINE L1 -2 6298 6072 5139 219 41 57 chrX 146323746 146324096 -30650044 - L1MC3 LINE L1 -975 5171 4817 198 0 0 0 chrX 146324097 146324119 -30650021 + (TA)n Simple_repeat Simple_repeat 1 22 0 3627 54 0 15 chrX 146324120 146324583 -30649557 - L1PA7 LINE L1 -21 6133 5678 738 127 18 0 chrX 146324578 146324741 -30649399 + L1P3 LINE L1 345 648 -5813 * 569 269 5 34 chrX 146324739 146324947 -30649193 - L1MC3 LINE L1 -1322 4824 4623 * 889 290 30 9 chrX 146324936 146325363 -30648777 - L1MC3 LINE L1 -2461 3685 3250 823 63 2 0 chrX 146325429 146325543 -30648597 - L1PA13 LINE L1 -300 5863 5751 882 278 28 12 chrX 146325547 146325978 -30648162 - L1MC3 LINE L1 -2928 3218 2781 1101 150 2 20 chrX 146325988 146326000 -30648140 + MER4B LTR ERV1 434 445 -165 5610 113 53 18 chrX 146326000 146327092 -30647048 - L1PA13 LINE L1 -10 6153 5053 1101 150 2 20 chrX 146327092 146327270 -30646870 + MER4B LTR ERV1 445 610 0 2624 115 139 52 chrX 146327273 146327813 -30646327 + MER4B-int LTR ERV1 1 587 -6011 1414 79 72 72 chrX 146327809 146328086 -30646054 + MER4B-int LTR ERV1 1005 1281 -5317 * 382 114 0 63 chrX 146328069 146328148 -30645992 + MER4B-int LTR ERV1 1498 1571 -5027 * 4382 65 57 27 chrX 146328146 146328850 -30645290 + MER4B-int LTR ERV1 1771 2495 -4103 1250 180 62 8 chrX 146328850 146329094 -30645046 - LTR8 LTR ERV1 -434 257 1 1052 37 74 0 chrX 146329099 146329261 -30644879 + MER4-int LTR ERV1 2752 2925 -3673 2076 99 16 21 chrX 146329263 146329668 -30644472 - LTR7 LTR ERV1 -2 448 1 2818 113 9 12 chrX 146329668 146330100 -30644040 - HERVH LTR ERV1 0 7713 7283 1976 151 23 19 chrX 146330096 146330531 -30643609 - HERVH LTR ERV1 -2252 4402 3673 * 1727 66 44 0 chrX 146330531 146330758 -30643382 + LTR2B LTR ERV1 1 237 -253 2980 101 0 9 chrX 146330779 146331223 -30642917 - HERVH LTR ERV1 -6435 1278 839 440 100 82 64 chrX 146331209 146331319 -30642821 - HERVH LTR ERV1 -7144 569 458 * 1525 164 86 82 chrX 146331327 146331804 -30642336 - HERVH LTR ERV1 -7076 637 159 8302 56 11 41 chrX 146331904 146333780 -30640360 + L1PA6 LINE L1 4301 6148 -6 1388 147 171 96 chrX 146334013 146334387 -30639753 - MER4A LTR ERV1 0 664 263 523 160 20 10 chrX 146334386 146334486 -30639654 - MER4A LTR ERV1 -563 101 1 * 242 263 88 29 chrX 146334489 146334660 -30639480 - L1MEc LINE L1 -4586 2159 1979 229 254 0 0 chrX 146334733 146334804 -30639336 - L1MEc LINE L1 -4881 1164 1094 1876 146 94 3 chrX 146334804 146335134 -30639006 + MSTA LTR MaLR 1 360 -68 7725 197 42 8 chrX 146335136 146336696 -30637444 + MSTA-int LTR MaLR 39 1651 0 690 80 20 0 chrX 146336698 146336798 -30637342 + MSTA LTR MaLR 3 104 -324 239 222 0 16 chrX 146337203 146337266 -30636874 + L1ME4a LINE L1 6060 6121 0 22 80 0 0 chrX 146337715 146337765 -30636375 + AT_rich Low_complexity Low_complexity 1 50 0 1084 269 106 26 chrX 146337769 146338430 -30635710 - L1M4 LINE L1 -933 5213 4500 1305 251 124 11 chrX 146338484 146338934 -30635206 - MLT1D LTR MaLR -4 501 1 469 156 55 0 chrX 146338992 146339101 -30635039 + L1MA9 LINE L1 6188 6302 -10 1879 132 0 14 chrX 146339867 146340147 -30633993 + AluSg SINE Alu 3 278 -32 213 405 53 0 chrX 146340766 146340897 -30633243 - MER91C DNA MER1_type 0 140 3 1020 169 0 0 chrX 146341052 146341224 -30632916 - AluSg/x SINE Alu -9 303 132 2005 146 0 3 chrX 146341360 146341661 -30632479 + AluSq SINE Alu 1 300 -13 1783 152 47 0 chrX 146341672 146341969 -30632171 + AluSx SINE Alu 1 311 -1 655 259 68 35 chrX 146342380 146342774 -30631366 - L1MEc LINE L1 -3991 2405 1999 1584 156 3 37 chrX 146342774 146343130 -30631010 - MER4A LTR ERV1 0 664 263 315 96 356 14 chrX 146343132 146343205 -30630935 - MER4A LTR ERV1 -566 98 1 1358 154 100 43 chrX 146343508 146343658 -30630482 + MSTA LTR MaLR 45 185 -243 2267 94 0 16 chrX 146343658 146343967 -30630173 + AluSc SINE Alu 1 304 -5 1358 154 100 43 chrX 146343967 146344115 -30630025 + MSTA LTR MaLR 185 360 -68 7558 194 51 23 chrX 146344115 146345680 -30628460 + MSTA-int LTR MaLR 37 1645 -6 744 63 0 36 chrX 146345687 146345798 -30628342 + MSTA LTR MaLR 3 109 -319 22 35 0 0 chrX 146346398 146346427 -30627713 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chrX 146346679 146346702 -30627438 + AT_rich Low_complexity Low_complexity 1 23 0 796 261 101 65 chrX 146346718 146347412 -30626728 - L1M4 LINE L1 -933 5213 4495 1313 236 127 33 chrX 146347449 146347907 -30626233 - MLT1D LTR MaLR -4 501 1 469 144 8 0 chrX 146347939 146348036 -30626104 + L1MA8 LINE L1 6174 6265 -26 8533 18 27 12 chrX 146348092 146349894 -30624246 - L1PA2 LINE L1 -6 6149 4328 11880 36 0 25 chrX 146349891 146351496 -30622644 + L1PA2 LINE L1 2776 4339 -1807 2195 112 0 13 chrX 146352243 146352548 -30621592 + AluSg SINE Alu 1 301 -9 234 392 54 0 chrX 146353130 146353260 -30620880 + MER91C DNA MER1_type 1 137 -3 1033 180 0 0 chrX 146353416 146353594 -30620546 - AluSg/x SINE Alu -3 309 132 1526 149 35 16 chrX 146353729 146353984 -30620156 + AluSq SINE Alu 1 260 -53 613 92 0 41 chrX 146353984 146354082 -30620058 + AluSg/x SINE Alu 211 304 -8 432 0 0 0 chrX 146354097 146354145 -30619995 + (TG)n Simple_repeat Simple_repeat 1 48 0 198 0 0 0 chrX 146354461 146354483 -30619657 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 212 281 0 0 chrX 146355639 146355703 -30618437 + CT-rich Low_complexity Low_complexity 1 64 0 3606 161 64 14 chrX 146355778 146356494 -30617646 + ERVL-D LTR ERVL 5006 5757 -7 1036 189 33 111 chrX 146356494 146356986 -30617154 + MLT2D LTR ERVL 1 491 -63 345 197 0 0 chrX 146357279 146357350 -30616790 + (TA)n Simple_repeat Simple_repeat 1 71 0 2094 163 12 27 chrX 146359034 146359444 -30614696 + L1MA6 LINE L1 5892 6295 -5 2154 116 0 3 chrX 146359463 146359757 -30614383 - AluSq SINE Alu -20 293 1 212 134 10 93 chrX 146359896 146359993 -30614147 + A-rich Low_complexity Low_complexity 4 92 0 301 156 39 39 chrX 146360440 146360568 -30613572 + CT-rich Low_complexity Low_complexity 5 132 0 956 219 23 82 chrX 146360568 146360847 -30613293 + L1ME1 LINE L1 5672 5901 -265 2116 143 0 0 chrX 146360847 146361148 -30612992 + AluSx SINE Alu 1 301 -11 956 219 23 82 chrX 146361148 146361325 -30612815 + L1ME1 LINE L1 5901 6087 -79 180 111 0 0 chrX 146362124 146362151 -30611989 + (CCCA)n Simple_repeat Simple_repeat 3 29 0 354 88 0 0 chrX 146362529 146362586 -30611554 + L1MA6 LINE L1 6242 6298 -2 27 29 0 0 chrX 146363494 146363528 -30610612 + AT_rich Low_complexity Low_complexity 1 34 0 259 220 33 0 chrX 146363604 146363695 -30610445 + (TA)n Simple_repeat Simple_repeat 2 95 0 1958 173 30 18 chrX 146365303 146365737 -30608403 + L1MB3 LINE L1 5384 5822 -361 611 198 18 0 chrX 146365741 146365852 -30608288 - FLAM_A SINE Alu -16 126 14 1718 165 46 3 chrX 146365867 146366218 -30607922 + L1MB3 LINE L1 5818 6183 0 594 28 0 0 chrX 146366640 146366712 -30607428 + (TC)n Simple_repeat Simple_repeat 2 73 0 2121 160 27 38 chrX 146367026 146367476 -30606664 - L1MA10 LINE L1 -8 6326 5882 2419 199 19 32 chrX 146367476 146367695 -30606445 + L1MB1 LINE L1 5306 5526 -663 1593 134 60 76 chrX 146367695 146368075 -30606065 - THE1C LTR MaLR 0 375 2 2419 199 19 32 chrX 146368075 146368447 -30605693 + L1MB1 LINE L1 5526 5889 -300 1737 161 6 53 chrX 146368639 146368962 -30605178 - AluJo SINE Alu -4 308 1 2354 97 0 0 chrX 146368973 146369272 -30604868 - AluSq SINE Alu -14 299 1 508 236 7 20 chrX 146369536 146369684 -30604456 + L1ME1 LINE L1 45 190 -6206 450 279 6 0 chrX 146369778 146369936 -30604204 + L1ME1 LINE L1 4565 4723 -1492 237 242 125 17 chrX 146369940 146370060 -30604080 - L1MA9 LINE L1 -38 6274 6142 540 183 62 53 chrX 146370061 146370125 -30604015 + L1ME1 LINE L1 4711 4773 -1442 2338 57 0 24 chrX 146370125 146370423 -30603717 + AluY SINE Alu 1 291 -20 540 183 62 53 chrX 146370423 146370566 -30603574 + L1ME1 LINE L1 4773 4920 -1295 * 1757 259 74 24 chrX 146370565 146371198 -30602942 + L1ME1 LINE L1 5560 6224 -11 324 0 0 0 chrX 146371550 146371586 -30602554 + (CA)n Simple_repeat Simple_repeat 1 36 0 4602 107 1 7 chrX 146372084 146373188 -30600952 + L1PA11 LINE L1 4807 5904 -270 205 347 157 0 chrX 146373347 146373468 -30600672 + MER91C DNA MER1_type 1 140 0 2104 243 100 12 chrX 146373839 146374440 -30599700 + MLT1E1 LTR MaLR 1 654 0 501 312 90 39 chrX 146376047 146376257 -30597883 + MIR SINE MIR 3 216 -46 4498 94 0 14 chrX 146376293 146376949 -30597191 + L1PA12 LINE L1 5522 6168 0 1197 160 43 43 chrX 146377624 146377905 -30596235 - L1MA9 LINE L1 -22 6290 6010 3191 277 55 34 chrX 146378681 146379662 -30594478 + L1M4 LINE L1 310 1268 -5691 2184 95 7 7 chrX 146379662 146379968 -30594172 + AluSc SINE Alu 1 306 -3 3191 277 55 34 chrX 146379968 146380258 -30593882 + L1M4 LINE L1 1268 1550 -5409 1925 121 8 0 chrX 146380258 146380522 -30593618 - AluSx SINE Alu -17 295 30 3191 277 55 34 chrX 146380522 146381102 -30593038 + L1M4 LINE L1 1550 2198 -4761 476 285 67 42 chrX 146381120 146381705 -30592435 + L1ME LINE L1 5097 5695 -471 254 234 0 0 chrX 146381839 146381903 -30592237 + CT-rich Low_complexity Low_complexity 1 64 0 1962 101 4 0 chrX 146382932 146383189 -30590951 - AluSx SINE Alu -27 285 28 2409 72 0 3 chrX 146383441 146383746 -30590394 + AluY SINE Alu 1 304 -7 1271 112 0 0 chrX 146383749 146383919 -30590221 + AluY SINE Alu 141 310 -1 589 273 65 60 chrX 146384191 146384608 -30589532 + L1ME LINE L1 1207 1625 -4759 985 268 28 36 chrX 146384620 146385296 -30588844 + L1ME LINE L1 5325 5986 -416 463 266 30 88 chrX 146437400 146437705 -30536435 + L1M4 LINE L1 4444 4730 -2227 21 0 0 0 chrX 146438235 146438256 -30535884 + AT_rich Low_complexity Low_complexity 1 21 0 1051 267 69 42 chrX 146439171 146439549 -30534591 - REP3 LTR ERV -174 388 1 687 287 61 32 chrX 146439681 146439960 -30534180 - MLT1L LTR MaLR -21 594 308 278 250 42 0 chrX 146439973 146440045 -30534095 - MLT1L LTR MaLR -540 75 1 315 177 0 0 chrX 146440382 146440444 -30533696 + CT-rich Low_complexity Low_complexity 2 63 0 205 253 172 11 chrX 146440529 146440616 -30533524 - MIR SINE MIR -6 256 156 206 333 0 17 chrX 146440704 146440764 -30533376 - L2 LINE L2 -36 3236 3178 273 361 62 7 chrX 146440920 146441064 -30533076 - L2 LINE L2 -204 3068 2917 1869 144 15 16 chrX 146441147 146441451 -30532689 - MER51B LTR ERV1 0 377 130 2006 145 27 30 chrX 146441451 146441816 -30532324 - THE1B LTR MaLR 0 364 1 1869 144 15 16 chrX 146441816 146441897 -30532243 - MER51B LTR ERV1 -247 130 50 517 108 140 11 chrX 146441913 146442006 -30532134 - MER51A LTR ERV1 -529 105 1 461 338 45 0 chrX 146442073 146442206 -30531934 - L2 LINE L2 0 3272 3134 4252 94 1 88 chrX 146442216 146442941 -30531199 - MER4A LTR ERV1 -2 662 1 236 323 45 45 chrX 146443010 146443143 -30530997 - L2 LINE L2 -23 3290 3158 435 231 8 69 chrX 146443299 146443429 -30530711 + MLT1I LTR MaLR 52 173 -236 706 274 75 24 chrX 146443430 146443642 -30530498 - MER58A DNA MER1_type -1 223 1 558 333 42 9 chrX 146443663 146443879 -30530261 + MLT1I LTR MaLR 187 409 0 331 110 41 14 chrX 146444017 146444090 -30530050 - L1MA7 LINE L1 -1 6290 6216 13050 225 27 21 chrX 146445538 146449694 -30524446 - L1PA16 LINE L1 -9 7595 3376 2306 109 3 0 chrX 146449694 146450005 -30524135 - AluSx SINE Alu 0 312 1 13050 225 27 21 chrX 146450005 146451208 -30522932 - L1PA16 LINE L1 -4228 3376 2182 1432 297 70 52 chrX 146451352 146452449 -30521691 - L1PA16 LINE L1 -5637 1944 10 30 27 0 0 chrX 146452669 146452706 -30521434 + AT_rich Low_complexity Low_complexity 1 37 0 837 277 53 18 chrX 146452987 146453269 -30520871 - MER54A LTR ERVL -308 593 302 327 252 87 8 chrX 146456069 146456196 -30517944 + L1ME4a LINE L1 5978 6114 -7 425 320 8 0 chrX 146456202 146456324 -30517816 - L2 LINE L2 -1 3312 3190 27 0 0 0 chrX 146456542 146456569 -30517571 + AT_rich Low_complexity Low_complexity 1 27 0 709 307 55 8 chrX 146457610 146457848 -30516292 - MIR SINE MIR -12 250 2 362 367 44 62 chrX 146457876 146458151 -30515989 - L2 LINE L2 -4 3268 2999 203 175 0 0 chrX 146459272 146459312 -30514828 + T-rich Low_complexity Low_complexity 3 42 0 679 271 16 10 chrX 146459852 146460044 -30514096 - MLT1J2 LTR MaLR -241 209 17 5188 191 29 10 chrX 146460375 146462147 -30511993 - L1MA10 LINE L1 0 6334 4531 1097 220 159 0 chrX 146462462 146462758 -30511382 + MER2 DNA MER2_type 1 343 -1 974 223 122 0 chrX 146462990 146463187 -30510953 - MER58A DNA MER1_type 0 224 4 299 339 9 9 chrX 146463213 146463328 -30510812 - L3 LINE CR1 -79 1498 1384 25 31 0 0 chrX 146463428 146463460 -30510680 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chrX 146464010 146464038 -30510102 + AT_rich Low_complexity Low_complexity 1 28 0 12905 233 43 21 chrX 146464039 146467923 -30506217 + L1PA13 LINE L1 185 4205 -2592 1921 171 0 3 chrX 146467923 146468232 -30505908 - AluSx SINE Alu -2 310 3 12905 233 43 21 chrX 146468232 146469267 -30504873 + L1PA13 LINE L1 4205 5216 -1581 2169 136 31 19 chrX 146469267 146469627 -30504513 + THE1B LTR MaLR 1 364 0 9772 133 51 3 chrX 146469627 146471134 -30503006 + THE1C-int LTR MaLR 1 1580 0 2674 89 13 11 chrX 146471136 146471508 -30502632 + THE1C LTR MaLR 3 375 0 1114 160 0 76 chrX 146471508 146471746 -30502394 - L1PB4 LINE L1 -46 6110 5891 241 272 160 16 chrX 146472152 146472277 -30501863 + MIR SINE MIR 9 151 -111 650 127 9 5 chrX 146472387 146472589 -30501551 + AluSx SINE Alu 1 301 -11 1514 84 9 0 chrX 146472823 146473037 -30501103 - L1MA1 LINE L1 -5 6297 6082 897 97 0 0 chrX 146473044 146473178 -30500962 + (TCCA)n Simple_repeat Simple_repeat 3 136 0 342 325 10 68 chrX 146473179 146473385 -30500755 - L2 LINE L2 -4 3309 3116 211 317 48 48 chrX 146473605 146473709 -30500431 - L2 LINE L2 -280 2992 2889 332 211 0 0 chrX 146474208 146474265 -30499875 + Charlie5 DNA MER1_type 2 58 -2554 * 437 173 20 87 chrX 146474260 146474410 -30499730 + Charlie5 DNA MER1_type 2484 2623 0 237 264 75 38 chrX 146474484 146474590 -30499550 + Tigger8 DNA MER2_type 202 311 -355 388 242 11 21 chrX 146475227 146475322 -30498818 + MER5A DNA MER1_type 95 188 -1 418 343 0 0 chrX 146475322 146475446 -30498694 - MIR SINE MIR -51 157 34 676 306 88 61 chrX 146475592 146476001 -30498139 - L3 LINE CR1 -5 1572 1153 29 0 0 0 chrX 146476055 146476084 -30498056 + AT_rich Low_complexity Low_complexity 1 29 0 232 224 7 0 chrX 146476238 146476294 -30497846 + Charlie8 DNA MER1_type 1371 2417 0 309 293 29 79 chrX 146476294 146476434 -30497706 - L3 LINE CR1 -442 1135 1003 2233 107 0 0 chrX 146477268 146477566 -30496574 + AluSx SINE Alu 1 298 -14 229 329 29 14 chrX 146477769 146477839 -30496301 + MIR3 SINE MIR 5 75 -133 23 0 0 0 chrX 146477995 146478018 -30496122 + AT_rich Low_complexity Low_complexity 1 23 0 297 319 111 7 chrX 146478059 146478203 -30495937 + MIR SINE MIR 29 187 -75 351 305 14 64 chrX 146478235 146478376 -30495764 - L3 LINE CR1 -442 1135 1002 516 246 157 48 chrX 146478942 146479190 -30494950 - LTR40b LTR ERVL -1 461 187 586 241 34 69 chrX 146479613 146479807 -30494333 + MIR3 SINE MIR 17 202 -6 14527 129 16 21 chrX 146479927 146483767 -30490373 + L1PA8 LINE L1 10 5715 -746 * 18115 25 0 1 chrX 146483750 146485914 -30488226 - L1PA2 LINE L1 -1693 4453 2292 7852 14 0 1 chrX 146485914 146487614 -30486526 + L1PA2 LINE L1 4455 6155 0 5806 71 5 0 chrX 146487664 146488450 -30485690 + L1PA8 LINE L1 5701 6490 0 26 50 0 0 chrX 146488520 146488560 -30485580 + AT_rich Low_complexity Low_complexity 1 40 0 237 103 0 0 chrX 146489850 146489870 -30484270 + (GA)n Simple_repeat Simple_repeat 2 21 -19 204 40 0 0 chrX 146489870 146489895 -30484245 + (TA)n Simple_repeat Simple_repeat 2 26 0 237 103 0 0 chrX 146489895 146489913 -30484227 + (GA)n Simple_repeat Simple_repeat 20 40 0 1825 229 75 17 chrX 146490311 146490788 -30483352 - MLT1D LTR MaLR 0 505 1 211 335 66 46 chrX 146490814 146490966 -30483174 - L2 LINE L2 -470 2844 2690 229 277 119 10 chrX 146491256 146491357 -30482783 - MIR3 SINE MIR -1 207 96 711 254 57 0 chrX 146492659 146492836 -30481304 - MIR SINE MIR 0 262 76 230 271 0 0 chrX 146493737 146493796 -30480344 + (TA)n Simple_repeat Simple_repeat 2 60 0 240 312 0 73 chrX 146494187 146494296 -30479844 + L2 LINE L2 2995 3095 -177 319 214 244 38 chrX 146494372 146494503 -30479637 - MIR SINE MIR -13 249 92 229 200 0 0 chrX 146494572 146494627 -30479513 + L1MC4 LINE L1 6649 6703 -1339 353 220 17 11 chrX 146494629 146494806 -30479334 + (TA)n Simple_repeat Simple_repeat 2 179 0 711 135 39 0 chrX 146494806 146494962 -30479178 + GA-rich Low_complexity Low_complexity 1 162 0 904 207 45 43 chrX 146494963 146495275 -30478865 - MLT2C2 LTR ERVL -92 372 1 183 345 52 0 chrX 146495278 146495336 -30478804 - MIR SINE MIR -200 62 2 * 281 370 47 16 chrX 146495336 146495442 -30478698 + L2 LINE L2 3163 3272 0 22 0 0 0 chrX 146495531 146495553 -30478587 + AT_rich Low_complexity Low_complexity 1 22 0 192 326 43 29 chrX 146497011 146497149 -30476991 + L2 LINE L2 2397 2536 -778 569 338 109 17 chrX 146497525 146497874 -30476266 + LTR16C LTR ERVL 111 491 0 326 331 41 23 chrX 146497875 146498047 -30476093 - L1ME LINE L1 -336 5785 5611 259 266 119 64 chrX 146498235 146498344 -30475796 + L2 LINE L2 3199 3313 0 624 140 0 40 chrX 146498573 146498673 -30475467 + MER65A LTR ERV1 152 247 -198 560 372 105 5 chrX 146498682 146499074 -30475066 - L2 LINE L2 -1087 2227 1797 2221 81 3 0 chrX 146499088 146499385 -30474755 - L1P3 LINE L1 -545 5627 5330 3640 81 4 4 chrX 146499385 146499877 -30474263 + L1PA8 LINE L1 5680 6171 -1 447 300 79 54 chrX 146499982 146500259 -30473881 - L2 LINE L2 -1724 1590 1307 186 209 0 0 chrX 146500847 146500890 -30473250 + (CA)n Simple_repeat Simple_repeat 2 44 0 457 279 37 47 chrX 146501370 146501560 -30472580 - LTR41 LTR ERVL -585 188 1 249 200 0 86 chrX 146501562 146501632 -30472508 + LTR50 LTR ERVL 14 77 -718 211 314 65 57 chrX 146501669 146501793 -30472347 - MIR3 SINE MIR -19 189 65 2103 104 0 0 chrX 146502055 146502368 -30471772 + AluSx SINE Alu 6 283 -29 26 0 0 0 chrX 146503111 146503137 -30471003 + AT_rich Low_complexity Low_complexity 1 26 0 214 152 0 43 chrX 146503333 146503379 -30470761 + (CTA)n Simple_repeat Simple_repeat 1 44 0 730 274 26 34 chrX 146504252 146504486 -30469654 + MIR SINE MIR 28 259 -3 2224 135 117 5 chrX 146504538 146504923 -30469217 - MSTA LTR MaLR 0 428 1 217 284 19 13 chrX 146505153 146505231 -30468909 - MIR SINE MIR -69 139 81 379 283 117 11 chrX 146505513 146505693 -30468447 - L2 LINE L2 0 3313 3115 286 361 109 11 chrX 146505939 146506213 -30467927 - L2 LINE L2 -428 2886 2586 5109 141 31 7 chrX 146506542 146507042 -30467098 + L1PA16 LINE L1 4984 5470 -696 294 50 0 0 chrX 146507042 146507082 -30467058 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 5109 141 31 7 chrX 146507082 146507742 -30466398 + L1PA16 LINE L1 5470 6166 0 253 340 42 21 chrX 146507802 146507946 -30466194 + MIR SINE MIR 50 196 -66 321 324 81 7 chrX 146508958 146509106 -30465034 + MLT1L LTR MaLR 1 159 -456 499 303 43 35 chrX 146509196 146509450 -30464690 + MLT1L LTR MaLR 360 615 0 21 0 0 0 chrX 146510273 146510294 -30463846 + AT_rich Low_complexity Low_complexity 1 21 0 2244 92 3 0 chrX 146510359 146510653 -30463487 - AluY SINE Alu -16 295 1 1875 205 77 36 chrX 146511088 146511849 -30462291 + L1MD2 LINE L1 5450 6349 -10 334 130 40 10 chrX 146513474 146513574 -30460566 + (TA)n Simple_repeat Simple_repeat 1 103 0 530 30 0 0 chrX 146513649 146513716 -30460424 - L1PA8 LINE L1 -7 6165 6099 445 259 23 15 chrX 146514023 146514154 -30459986 + MER94 DNA DNA 1 132 -2 437 279 46 46 chrX 146514206 146514425 -30459715 - L1MEd LINE L1 -5899 220 2 287 254 106 21 chrX 146514488 146514630 -30459510 + L1ME4a LINE L1 5968 6121 0 242 310 60 52 chrX 146514959 146515075 -30459065 + MIR SINE MIR 107 223 -39 1767 175 57 54 chrX 146515275 146515413 -30458727 + L1MA9 LINE L1 5669 5805 -507 267 103 0 0 chrX 146515413 146515452 -30458688 + (CA)n Simple_repeat Simple_repeat 2 40 0 1767 175 57 54 chrX 146515452 146515754 -30458386 + L1MA9 LINE L1 5805 6110 -202 255 113 0 57 chrX 146515793 146515846 -30458294 - LTR66 LTR ERVL -163 447 398 207 100 0 0 chrX 146515846 146515876 -30458264 + (TA)n Simple_repeat Simple_repeat 2 31 0 2191 115 0 13 chrX 146515972 146516286 -30457854 - AluSx SINE Alu -2 310 1 415 306 8 8 chrX 146516323 146516447 -30457693 - L2 LINE L2 0 3313 3190 836 239 83 26 chrX 146516627 146516840 -30457300 - MIR SINE MIR -18 244 16 3904 118 53 2 chrX 146516840 146517444 -30456696 + MER41B LTR ERV1 1 635 0 836 239 83 26 chrX 146517444 146517460 -30456680 - MIR SINE MIR -246 16 2 1710 117 25 7 chrX 146517478 146517761 -30456379 + L1PB2 LINE L1 5857 6144 -7 204 231 0 0 chrX 146517761 146517800 -30456340 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 266 219 0 62 chrX 146517800 146517896 -30456244 - L1MC4 LINE L1 -1339 6703 6614 * 276 270 0 0 chrX 146517818 146517907 -30456233 + L1MC4 LINE L1 6614 6702 -1340 221 278 0 0 chrX 146517914 146517968 -30456172 - L2 LINE L2 -338 2975 2922 305 267 11 11 chrX 146517970 146518060 -30456080 - L2 LINE L2 -1650 1664 1575 252 253 99 33 chrX 146518430 146518521 -30455619 + L2 LINE L2 3207 3303 -10 1730 225 129 43 chrX 146518562 146519230 -30454910 + MER50 LTR ERV1 10 734 0 369 302 36 90 chrX 146519301 146519579 -30454561 + LTR16C LTR ERVL 6 268 -223 2263 163 31 0 chrX 146519594 146519980 -30454160 + MER57A LTR ERV1 6 403 0 3120 153 23 23 chrX 146519987 146520557 -30453583 + MER41B LTR ERV1 1 570 -65 8370 178 21 19 chrX 146520566 146520814 -30453326 - L1 LINE L1 -1194 4952 4706 2102 98 0 4 chrX 146520814 146521090 -30453050 - AluSx SINE Alu -24 288 14 8370 178 21 19 chrX 146521090 146522632 -30451508 - L1 LINE L1 -1440 4706 3159 1787 172 63 0 chrX 146522637 146522956 -30451184 + Tigger1 DNA MER2_type 1293 1631 -787 * 2311 147 29 21 chrX 146522928 146523349 -30450791 + Tigger1 DNA MER2_type 1993 2416 -2 240 247 24 24 chrX 146523550 146523635 -30450505 + L2 LINE L2 2702 2786 -528 244 303 62 110 chrX 146523737 146524027 -30450113 + L2 LINE L2 2890 3165 -107 217 324 113 21 chrX 146524160 146524302 -30449838 + MIR SINE MIR 41 195 -67 1605 264 130 33 chrX 146524896 146525610 -30448530 + L1ME LINE L1 369 1012 -5203 189 0 0 0 chrX 146525610 146525631 -30448509 + (CA)n Simple_repeat Simple_repeat 2 22 0 1605 264 130 33 chrX 146525631 146526130 -30448010 + L1ME LINE L1 1012 1674 -4541 412 176 23 53 chrX 146526158 146526289 -30447851 + L1ME1 LINE L1 4535 4661 -1485 838 187 0 11 chrX 146526289 146526476 -30447664 + L1ME1 LINE L1 4863 5047 -1099 854 185 97 5 chrX 146526512 146526707 -30447433 + L1ME1 LINE L1 5304 5516 -662 * 978 230 48 39 chrX 146526705 146527014 -30447126 + L1ME1 LINE L1 5829 6143 -23 1823 196 68 70 chrX 146527014 146527569 -30446571 + MLT2B3 LTR ERVL 1 554 0 978 230 48 39 chrX 146527569 146527590 -30446550 + L1ME1 LINE L1 6143 6162 -4 21 36 0 0 chrX 146528048 146528076 -30446064 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chrX 146528238 146528266 -30445874 + AT_rich Low_complexity Low_complexity 1 28 0 1709 125 70 0 chrX 146528884 146529189 -30444951 + AluSx SINE Alu 1 312 0 947 236 83 43 chrX 146529660 146530010 -30444130 + L1ME LINE L1 1884 2218 -3997 1857 126 7 0 chrX 146530010 146530295 -30443845 - AluSq SINE Alu -25 288 2 947 236 83 43 chrX 146530295 146530537 -30443603 + L1ME LINE L1 2218 2449 -3766 3287 87 2 0 chrX 146530537 146530983 -30443157 - L1PA8 LINE L1 0 6172 5726 947 236 83 43 chrX 146530983 146531210 -30442930 + L1ME LINE L1 2449 2684 -3531 754 263 53 3 chrX 146531283 146531621 -30442519 + L1ME LINE L1 2851 3205 -3010 * 3849 234 78 88 chrX 146531610 146532038 -30442102 + L1ME1 LINE L1 2597 3028 -3118 5321 144 6 19 chrX 146532038 146533293 -30440847 + L1PA16 LINE L1 4909 6157 -9 3849 234 78 88 chrX 146533293 146535034 -30439106 + L1ME1 LINE L1 3028 4744 -1402 6663 34 0 1 chrX 146535050 146535836 -30438304 - L1PA5 LINE L1 -8 6146 5362 3072 34 10 0 chrX 146535827 146536214 -30437926 + L1PA5 LINE L1 4977 5367 -779 * 2221 257 25 25 chrX 146536212 146537279 -30436861 + L1ME1 LINE L1 4730 6048 -118 * 256 200 0 0 chrX 146537283 146537338 -30436802 + L1MA10 LINE L1 6277 6331 -3 2109 103 3 0 chrX 146537374 146537694 -30436446 + AluSp SINE Alu 1 321 0 25 51 0 0 chrX 146537817 146537856 -30436284 + AT_rich Low_complexity Low_complexity 1 39 0 866 202 67 14 chrX 146538466 146538674 -30435466 + L1MA9 LINE L1 6057 6275 -37 945 297 54 9 chrX 146538899 146539326 -30434814 + L1M4b LINE L1 1215 1660 -5199 * 3649 175 7 28 chrX 146539325 146540079 -30434061 - L1MA6 LINE L1 -1062 5084 4347 * 5281 161 50 9 chrX 146540068 146540735 -30433405 + L1MA6 LINE L1 5084 5820 -480 266 0 29 0 chrX 146540735 146540769 -30433371 + (CA)n Simple_repeat Simple_repeat 2 36 0 5281 161 50 9 chrX 146540769 146541266 -30432874 + L1MA6 LINE L1 5820 6295 -5 294 254 144 0 chrX 146541319 146541437 -30432703 - MLT1H1 LTR MaLR -1 554 420 1115 233 12 98 chrX 146541471 146541870 -30432270 + MLT1A1 LTR MaLR 1 365 0 371 331 24 0 chrX 146542036 146542163 -30431977 - MLT1H LTR MaLR -354 195 66 269 299 47 0 chrX 146542567 146542674 -30431466 + (CATA)n Simple_repeat Simple_repeat 4 115 0 1496 213 55 9 chrX 146542683 146543012 -30431128 + MER2 DNA MER2_type 1 344 0 253 274 72 33 chrX 146543051 146543204 -30430936 - L1MC4a LINE L1 -1878 5930 5772 694 306 16 0 chrX 146543249 146543432 -30430708 + MIR SINE MIR 3 188 -74 764 329 38 30 chrX 146543432 146543827 -30430313 - MLT1I LTR MaLR -6 403 6 264 222 153 0 chrX 146543832 146543904 -30430236 + MIR SINE MIR 180 262 0 1817 164 3 12 chrX 146543975 146544311 -30429829 - L1PA16 LINE L1 0 6166 5834 428 231 51 39 chrX 146545625 146545781 -30428359 - L2 LINE L2 -54 3259 3102 942 231 39 34 chrX 146546071 146546305 -30427835 - MIR SINE MIR -19 243 9 1080 209 27 9 chrX 146546341 146546561 -30427579 - MER58A DNA MER1_type 0 224 1 348 247 226 0 chrX 146546642 146546735 -30427405 - MIR SINE MIR -134 128 15 826 141 0 22 chrX 146547629 146547764 -30426376 - FLAM_C SINE Alu -1 132 1 243 374 67 38 chrX 146548146 146548384 -30425756 - L2 LINE L2 -218 3054 2810 224 327 69 30 chrX 146548557 146548658 -30425482 + L2 LINE L2 2956 3060 -253 271 203 159 0 chrX 146548739 146548808 -30425332 - MER116 DNA Mariner 0 80 1 303 331 103 14 chrX 146548823 146548968 -30425172 + L2 LINE L2 3146 3303 -10 211 244 0 0 chrX 146548968 146549013 -30425127 + (TTA)n Simple_repeat Simple_repeat 3 47 0 457 328 157 36 chrX 146549046 146549438 -30424702 - L2 LINE L2 -158 3114 2771 1983 156 11 45 chrX 146549438 146549770 -30424370 - MLT1A1 LTR MaLR 0 365 46 1824 103 8 8 chrX 146549770 146550031 -30424109 + AluSx SINE Alu 43 303 -9 1983 156 11 45 chrX 146550031 146550076 -30424064 - MLT1A1 LTR MaLR -319 46 1 457 328 157 36 chrX 146550076 146550383 -30423757 - L2 LINE L2 -501 2771 2337 29 0 0 0 chrX 146550526 146550555 -30423585 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chrX 146550891 146550913 -30423227 + AT_rich Low_complexity Low_complexity 1 22 0 181 54 0 54 chrX 146551475 146551512 -30422628 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 758 0 0 0 chrX 146552672 146552761 -30421379 + L1HS LINE L1 6067 6155 0 490 250 45 0 chrX 146553146 146553258 -30420882 - MER90 LTR ERV1 -16 559 443 1591 157 103 35 chrX 146553262 146553637 -30420503 - MLT1B LTR MaLR -6 373 2 984 230 106 35 chrX 146553662 146554066 -30420074 - MER90 LTR ERV1 -181 433 1 877 271 48 39 chrX 146554581 146554939 -30419201 + MLT1J1 LTR MaLR 54 414 -32 14142 230 53 19 chrX 146554952 146561060 -30413080 - L1PA15 LINE L1 -1 6815 63 191 338 0 29 chrX 146562772 146562840 -30411300 - MIR3 SINE MIR -5 203 138 312 302 0 0 chrX 146563038 146563124 -30411016 - MER31-int LTR ERV1 -741 4195 4110 607 255 26 74 chrX 146563190 146563461 -30410679 - MER31-int LTR ERV1 -840 4096 3839 901 210 48 21 chrX 146563530 146563716 -30410424 + MLT2B1 LTR ERVL 1 191 -329 276 213 0 0 chrX 146563727 146563788 -30410352 + (TA)n Simple_repeat Simple_repeat 2 62 0 297 287 0 0 chrX 146563863 146563971 -30410169 + (TA)n Simple_repeat Simple_repeat 1 108 0 301 333 0 0 chrX 146563978 146564068 -30410072 + L1MC4 LINE L1 6614 6703 -1339 251 322 0 0 chrX 146564072 146564162 -30409978 - L1MC4 LINE L1 -1339 6703 6614 686 232 0 6 chrX 146564163 146564344 -30409796 + (TA)n Simple_repeat Simple_repeat 1 180 0 220 39 0 0 chrX 146564344 146564370 -30409770 + (CA)n Simple_repeat Simple_repeat 1 26 0 198 0 0 0 chrX 146564371 146564393 -30409747 + (GA)n Simple_repeat Simple_repeat 2 23 0 291 146 0 0 chrX 146564395 146564443 -30409697 + MLT2B1 LTR ERVL 465 512 -8 443 190 14 63 chrX 146564446 146564588 -30409552 - MER31-int LTR ERV1 -1166 3770 3636 3025 272 107 12 chrX 146565046 146565645 -30408495 - L1MEc LINE L1 -4618 1778 1237 4673 57 7 2 chrX 146565645 146566242 -30407898 - L1PA6 LINE L1 -4 6150 5551 3025 272 107 12 chrX 146566242 146566927 -30407213 - L1MEc LINE L1 -5159 1237 372 263 278 41 41 chrX 146568296 146568393 -30405747 - L2 LINE L2 -7 3265 3169 1019 250 51 58 chrX 146568634 146569185 -30404955 - L2 LINE L2 -5 3308 2781 313 336 24 8 chrX 146569198 146569323 -30404817 + MIR SINE MIR 5 131 -131 345 236 74 74 chrX 146569523 146569739 -30404401 + L2 LINE L2 3073 3288 -25 391 279 94 11 chrX 146570671 146570837 -30403303 + MIR SINE MIR 30 206 -56 231 345 11 0 chrX 146571080 146571167 -30402973 + L2 LINE L2 3226 3313 0 200 289 51 45 chrX 146571180 146571336 -30402804 + L2 LINE L2 2825 2981 -291 1130 177 80 74 chrX 146571597 146571984 -30402156 + MSTC LTR MaLR 3 428 0 357 331 44 15 chrX 146573364 146573500 -30400640 + L2 LINE L2 2696 2835 -479 287 276 161 0 chrX 146573552 146573639 -30400501 - MER63A DNA MER1_type -39 171 71 563 336 43 33 chrX 146573712 146574026 -30400114 + L2 LINE L2 2739 3057 -256 1923 86 8 0 chrX 146574076 146574343 -30399797 - L1PA8 LINE L1 -1 6171 5903 213 333 0 0 chrX 146574476 146574533 -30399607 + MIR3 SINE MIR 151 207 -1 234 167 104 0 chrX 146574594 146574642 -30399498 - L2 LINE L2 0 3313 3261 768 235 29 12 chrX 146575118 146575361 -30398779 - L1MA5 LINE L1 -1704 4442 4196 5437 176 28 13 chrX 146575361 146576197 -30397943 + L1MA5 LINE L1 4459 5280 -1020 183 42 0 0 chrX 146576197 146576221 -30397919 + (TAA)n Simple_repeat Simple_repeat 2 25 0 5437 176 28 13 chrX 146576221 146576861 -30397279 + L1MA5 LINE L1 5280 5909 -391 13875 144 35 16 chrX 146576861 146577724 -30396416 + Tigger1 DNA MER2_type 1 846 -1572 2235 104 0 0 chrX 146577724 146578021 -30396119 + AluSc SINE Alu 1 297 -12 13875 144 35 16 chrX 146578021 146579531 -30394609 + Tigger1 DNA MER2_type 846 2418 0 5437 176 28 13 chrX 146579531 146579584 -30394556 + L1MA5 LINE L1 5909 5960 -340 2042 113 98 15 chrX 146579584 146579920 -30394220 + THE1B LTR MaLR 1 364 0 5437 176 28 13 chrX 146579920 146580210 -30393930 + L1MA5 LINE L1 5960 6297 -3 331 314 68 104 chrX 146580298 146580446 -30393694 - L2 LINE L2 -668 2646 2494 2030 145 3 0 chrX 146580446 146580743 -30393397 + AluSx SINE Alu 1 298 -14 331 314 68 104 chrX 146580743 146580948 -30393192 - L2 LINE L2 -820 2494 2306 520 322 98 50 chrX 146581526 146581883 -30392257 - L2 LINE L2 -1027 2287 1914 247 309 109 9 chrX 146583623 146583733 -30390407 + L2 LINE L2 2199 2319 -995 290 247 71 0 chrX 146584285 146584370 -30389770 + L1MC4 LINE L1 6613 6703 -1339 285 232 0 0 chrX 146584378 146584447 -30389693 + (TA)n Simple_repeat Simple_repeat 2 70 0 2247 98 0 7 chrX 146584476 146584771 -30389369 - AluSx SINE Alu -19 293 1 1168 294 62 31 chrX 146584805 146585227 -30388913 + LTR16A LTR ERVL 16 450 0 375 347 47 77 chrX 146585713 146586041 -30388099 - L2 LINE L2 -2 3270 2955 1641 118 8 28 chrX 146586041 146586296 -30387844 + AluSx SINE Alu 51 300 -12 375 347 47 77 chrX 146586296 146586368 -30387772 - L2 LINE L2 -317 2955 2882 2233 98 3 0 chrX 146586552 146586838 -30387302 + AluSp SINE Alu 3 289 -24 438 20 0 0 chrX 146586840 146586891 -30387249 + (TA)n Simple_repeat Simple_repeat 2 52 0 324 0 0 0 chrX 146586890 146586926 -30387214 + (GA)n Simple_repeat Simple_repeat 2 37 0 * 3921 144 12 9 chrX 146587127 146587802 -30386338 + L1MA5 LINE L1 5559 6235 -65 229 171 171 0 chrX 146587838 146587926 -30386214 + (CATTA)n Simple_repeat Simple_repeat 5 107 0 197 171 12 49 chrX 146587931 146588013 -30386127 + (CAATA)n Simple_repeat Simple_repeat 1 79 0 200 167 21 0 chrX 146588141 146588189 -30385951 + (CAATA)n Simple_repeat Simple_repeat 4 52 0 385 125 10 87 chrX 146588202 146588306 -30385834 + L1MA5 LINE L1 6200 6295 -5 2868 6 0 0 chrX 146588501 146588812 -30385328 + AluY SINE Alu 1 311 0 345 310 26 26 chrX 146588844 146588957 -30385183 - L2 LINE L2 0 3272 3160 79 82 0 0 chrX 146589756 146589940 -30384200 + AT_rich Low_complexity Low_complexity 1 184 0 289 233 121 26 chrX 146590091 146590207 -30383933 + MLT1J LTR MaLR 316 442 -69 381 225 135 55 chrX 146590549 146590749 -30383391 - L1MC4a LINE L1 -1895 5913 5698 363 268 45 0 chrX 146590808 146590920 -30383220 - MER97c DNA MER1_type? -918 172 56 506 293 106 8 chrX 146591002 146591258 -30382882 - L1MC4a LINE L1 -2211 5597 5317 * 1165 246 59 17 chrX 146591255 146591613 -30382527 - L1MB7 LINE L1 -16 6168 5796 2712 221 34 22 chrX 146591621 146592335 -30381805 - L1MB7 LINE L1 -789 5357 4636 453 211 6 68 chrX 146592364 146592442 -30381698 - L1MC4a LINE L1 -1016 5130 5066 2304 79 3 3 chrX 146592442 146592734 -30381406 + AluY SINE Alu 2 293 -18 453 211 6 68 chrX 146592734 146592816 -30381324 - L1MC4a LINE L1 -1080 5066 4980 2016 174 23 3 chrX 146592824 146593210 -30380930 - L1PA16 LINE L1 -9 6157 5764 3693 58 7 0 chrX 146593218 146593683 -30380457 - L1PA7 LINE L1 -4 6150 5683 1799 172 16 0 chrX 146593689 146594003 -30380137 - L1PA16 LINE L1 -388 5778 5460 * 16794 184 27 8 chrX 146594002 146594456 -30379684 + L1PA13 LINE L1 1747 2191 -3972 2082 125 3 7 chrX 146594456 146594761 -30379379 - AluSx SINE Alu -8 304 1 16794 184 27 8 chrX 146594761 146598637 -30375503 + L1PA13 LINE L1 2191 6156 -7 407 160 64 0 chrX 146598649 146598743 -30375397 - L1M2 LINE L1 -838 5459 5360 388 320 119 15 chrX 146598982 146599394 -30374746 - L1MC4a LINE L1 -2172 3974 3520 370 320 13 26 chrX 146599542 146599695 -30374445 - MER5A DNA MER1_type -12 177 27 1204 189 0 10 chrX 146599735 146599941 -30374199 - AluJo SINE Alu -22 290 87 306 50 0 0 chrX 146600154 146600194 -30373946 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 330 82 15 chrX 146600661 146600791 -30373349 - MIR3 SINE MIR -47 161 23 285 29 0 0 chrX 146601368 146601402 -30372738 + (CA)n Simple_repeat Simple_repeat 1 34 0 312 296 64 8 chrX 146601704 146601829 -30372311 - MIR SINE MIR -50 212 81 612 263 17 17 chrX 146601938 146602113 -30372027 - MER5B DNA MER1_type -3 175 1 241 358 12 0 chrX 146602327 146602408 -30371732 - L2 LINE L2 -213 3059 2978 2035 131 62 20 chrX 146602913 146603271 -30370869 + THE1C LTR MaLR 1 373 -2 360 136 34 23 chrX 146603487 146603575 -30370565 + C-rich Low_complexity Low_complexity 2 90 0 799 257 97 9 chrX 146603853 146604079 -30370061 + MER102a DNA MER1_type 75 320 -10 210 224 0 0 chrX 146604606 146604655 -30369485 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 450 273 74 58 chrX 146604699 146604959 -30369181 - L1MC/D LINE L1 -312 5809 5549 1499 108 5 5 chrX 146605079 146605292 -30368848 - AluSg/x SINE Alu -4 306 94 230 340 67 74 chrX 146605641 146606044 -30368096 - L2 LINE L2 -657 2657 2258 262 295 79 44 chrX 146606666 146606893 -30367247 + L1ME4a LINE L1 5378 5612 -509 450 205 57 0 chrX 146606964 146607086 -30367054 + L1ME4a LINE L1 5750 5878 -243 287 368 22 15 chrX 146607498 146607634 -30366506 - MIR3 SINE MIR -63 145 9 267 415 0 21 chrX 146607790 146607932 -30366208 - L2 LINE L2 -13 3259 3121 311 320 48 0 chrX 146610921 146611046 -30363094 + MIR SINE MIR 78 208 -54 389 169 117 0 chrX 146611089 146611166 -30362974 + MLT1B LTR MaLR 1 86 -381 1038 174 43 122 chrX 146611240 146611568 -30362572 + MLT1B LTR MaLR 89 390 0 442 283 0 29 chrX 146611722 146611860 -30362280 + MER94 DNA DNA 1 134 0 1944 138 48 0 chrX 146612667 146612956 -30361184 + AluSq SINE Alu 1 303 -10 382 299 158 33 chrX 146613104 146613288 -30360852 + MIR SINE MIR 2 208 -54 219 69 0 0 chrX 146613950 146613979 -30360161 + (A)n Simple_repeat Simple_repeat 1 29 0 327 321 0 9 chrX 146614317 146614423 -30359717 - MIR3 SINE MIR -9 199 95 346 378 70 5 chrX 146614678 146614892 -30359248 + MIR SINE MIR 30 256 -6 252 212 48 54 chrX 146615587 146615704 -30358436 - L1ME LINE L1 -306 5855 5746 457 288 197 5 chrX 146616148 146616346 -30357794 + MIR SINE MIR 21 256 -6 24 0 0 0 chrX 146616493 146616517 -30357623 + AT_rich Low_complexity Low_complexity 1 24 0 360 329 0 36 chrX 146617492 146617629 -30356511 + L2 LINE L2 3136 3267 -5 2380 277 60 36 chrX 146617723 146618697 -30355443 - L2 LINE L2 -136 3177 2183 1207 232 140 20 chrX 146618699 146619048 -30355092 + MLT1C LTR MaLR 1 391 -76 1709 270 86 12 chrX 146619082 146619678 -30354462 - L2 LINE L2 -1131 2183 1544 204 158 0 0 chrX 146619696 146619734 -30354406 + (TATAG)n Simple_repeat Simple_repeat 5 42 0 194 290 43 21 chrX 146619734 146619827 -30354313 + MIR SINE MIR 166 260 -2 291 287 201 35 chrX 146619888 146620062 -30354078 - L2 LINE L2 -1078 2236 2034 310 341 0 48 chrX 146620869 146620995 -30353145 + MER5A DNA MER1_type 70 189 0 250 306 162 9 chrX 146621192 146621303 -30352837 + L2 LINE L2 3185 3312 -1 740 276 106 50 chrX 146621309 146622255 -30351885 + L1ME2 LINE L1 4877 5880 -284 703 185 121 19 chrX 146622635 146622792 -30351348 + FRAM SINE Alu 1 168 -8 4310 44 6 7 chrX 146622936 146623478 -30350662 + L1PA5 LINE L1 5607 6147 -7 507 279 63 1 chrX 146623647 146623835 -30350305 - MIR3 SINE MIR -3 205 1 181 295 95 11 chrX 146623849 146623944 -30350196 + L2 LINE L2 2982 3084 -229 185 333 0 33 chrX 146624212 146624302 -30349838 - L2 LINE L2 -12 3301 3215 589 273 12 35 chrX 146624372 146624544 -30349596 - MIR SINE MIR -94 168 1 24 32 0 0 chrX 146625070 146625101 -30349039 + AT_rich Low_complexity Low_complexity 1 31 0 321 233 1 3 chrX 146626266 146626388 -30347752 + L1 LINE L1 4490 4610 -1536 2214 66 49 21 chrX 146626851 146627138 -30347002 + AluY SINE Alu 4 298 -13 417 39 0 0 chrX 146627138 146627167 -30346973 + (CA)n Simple_repeat Simple_repeat 1 80 0 417 39 0 0 chrX 146627167 146627218 -30346922 + (CA)n Simple_repeat Simple_repeat 2 52 0 1171 29 0 0 chrX 146627344 146627481 -30346659 - L1PA3 LINE L1 -3 6152 6016 689 287 76 23 chrX 146627528 146627831 -30346309 + L2 LINE L2 2995 3313 0 1427 276 63 34 chrX 146627982 146628580 -30345560 + L2 LINE L2 2698 3313 0 596 244 67 44 chrX 146628587 146628857 -30345283 + L1ME4a LINE L1 5602 5877 -244 1351 111 5 5 chrX 146629993 146630201 -30343939 - L1PA13 LINE L1 -3 6160 5953 242 320 165 0 chrX 146630923 146631026 -30343114 - L3 LINE CR1 -490 1087 968 435 246 22 22 chrX 146681096 146681275 -30292865 + (TA)n Simple_repeat Simple_repeat 2 180 0 241 246 15 0 chrX 146681324 146681458 -30292682 + (TA)n Simple_repeat Simple_repeat 1 136 0 267 322 7 7 chrX 146681470 146681616 -30292524 + (TA)n Simple_repeat Simple_repeat 1 146 0 309 250 9 0 chrX 146681633 146682119 -30292021 + (TA)n Simple_repeat Simple_repeat 1 490 0 329 240 23 0 chrX 146682140 146682315 -30291825 + (TA)n Simple_repeat Simple_repeat 2 180 0 3977 192 58 54 chrX 146682388 146683236 -30290904 + L1MD2 LINE L1 5257 6100 -259 267 31 0 0 chrX 146683236 146683268 -30290872 + (CA)n Simple_repeat Simple_repeat 2 33 0 3977 192 58 54 chrX 146683268 146683290 -30290850 + L1MD2 LINE L1 6100 6120 -239 258 105 0 0 chrX 146683290 146683328 -30290812 - tRNA-Cys-TGC tRNA tRNA -37 38 1 3977 192 58 54 chrX 146683328 146683516 -30290624 + L1MD2 LINE L1 6120 6358 -1 296 298 25 50 chrX 146685542 146685663 -30288477 + MIR SINE MIR 2 119 -143 325 194 0 0 chrX 146685956 146686028 -30288112 + HAL1b LINE L1 733 804 -544 437 238 64 25 chrX 146686108 146686310 -30287830 + HAL1b LINE L1 952 1161 -187 5503 132 27 6 chrX 146686642 146687289 -30286851 - L1PA16 LINE L1 -3 6163 5531 450 0 0 0 chrX 146687289 146687339 -30286801 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2189 98 0 3 chrX 146687339 146687624 -30286516 - AluSx SINE Alu -28 284 1 5503 132 27 6 chrX 146687624 146687861 -30286279 - L1PA16 LINE L1 -634 5532 5259 332 263 10 40 chrX 146687872 146687971 -30286169 + MIR3 SINE MIR 15 110 -98 207 229 133 36 chrX 146688159 146688242 -30285898 - MIR SINE MIR -50 212 122 462 296 92 15 chrX 146688864 146689070 -30285070 - MIR SINE MIR 0 262 41 283 330 21 77 chrX 146689317 146689550 -30284590 - L3 LINE CR1 -27 1550 1331 8931 197 35 29 chrX 146689550 146692195 -30281945 + L1PA15-16 LINE L1 1310 3975 -2874 4401 228 33 24 chrX 146692188 146693236 -30280904 + L1MA2 LINE L1 12 1069 -6496 * 324 224 0 0 chrX 146693253 146693320 -30280820 + L1MA2 LINE L1 1041 1107 -6458 * 8062 176 24 4 chrX 146693317 146695784 -30278356 + L1MA2 LINE L1 2293 4810 -2755 3883 129 3 13 chrX 146695777 146696529 -30277611 + L1MA2 LINE L1 6523 7269 -454 * 1879 9 0 0 chrX 146696525 146696740 -30277400 - L1P LINE L1 -1554 4592 4378 * 2333 145 49 9 chrX 146696740 146697187 -30276953 + L1MA2 LINE L1 7258 7723 0 8076 205 41 3 chrX 146697201 146699014 -30275126 + L1PA16 LINE L1 3254 5209 -957 441 0 0 0 chrX 146699014 146699063 -30275077 + (CA)n Simple_repeat Simple_repeat 1 49 0 8076 205 41 3 chrX 146699063 146700051 -30274089 + L1PA16 LINE L1 5209 6157 -9 640 317 158 32 chrX 146700115 146700553 -30273587 - L3 LINE CR1 -349 1228 736 264 382 60 33 chrX 146701275 146701824 -30272316 - L2 LINE L2 -423 2891 2262 929 319 107 58 chrX 146701840 146701914 -30272226 + L3 LINE CR1 718 787 -790 1403 277 18 18 chrX 146701914 146702362 -30271778 - LTR16A LTR ERVL -2 448 1 929 319 107 58 chrX 146702362 146703103 -30271037 + L3 LINE CR1 787 1573 -4 2093 92 14 14 chrX 146703138 146703432 -30270708 - AluSq SINE Alu -4 309 16 893 234 15 10 chrX 146703894 146704095 -30270045 - MER3 DNA MER1_type -5 204 3 183 186 0 0 chrX 146705740 146705783 -30268357 + (TG)n Simple_repeat Simple_repeat 2 44 0 2082 110 4 0 chrX 146705884 146706165 -30267975 + AluSc SINE Alu 3 284 -25 328 254 50 53 chrX 146706865 146706993 -30267147 + MER5B DNA MER1_type 19 144 -45 5361 155 51 31 chrX 146707272 146708397 -30265743 + L1MA4 LINE L1 4133 5234 -1066 1699 159 17 27 chrX 146708397 146708693 -30265447 + AluJo SINE Alu 3 295 -17 5361 155 51 31 chrX 146708693 146709218 -30264922 + L1MA4 LINE L1 5234 5747 -553 420 20 0 0 chrX 146709218 146709267 -30264873 + (CA)n Simple_repeat Simple_repeat 2 50 0 5361 155 51 31 chrX 146709267 146709720 -30264420 + L1MA4 LINE L1 5747 6295 -5 341 327 44 38 chrX 146709930 146710089 -30264051 + MIR3 SINE MIR 38 197 -11 447 200 0 11 chrX 146711200 146711295 -30262845 - L1MC2 LINE L1 -100 6244 6151 3464 196 38 17 chrX 146711311 146712758 -30261382 + L1MC2 LINE L1 4440 5907 -437 354 263 46 57 chrX 146712970 146713145 -30260995 + Charlie8 DNA MER1_type 2244 2416 -1 268 337 11 0 chrX 146713355 146713447 -30260693 - L2 LINE L2 -923 2391 2299 4289 192 64 13 chrX 146713624 146713797 -30260343 - L1MA10 LINE L1 -2 6332 6169 180 111 0 0 chrX 146713797 146713824 -30260316 + (TG)n Simple_repeat Simple_repeat 1 27 0 4289 192 64 13 chrX 146713824 146714665 -30259475 - L1MA10 LINE L1 -165 6169 5266 338 217 36 0 chrX 146714665 146714748 -30259392 - Tigger5 DNA MER2_type -1 2322 2237 249 250 0 18 chrX 146714758 146714814 -30259326 - Tigger5 DNA MER2_type -2268 55 1 598 174 0 8 chrX 146714814 146714935 -30259205 - L1MA10 LINE L1 -878 5268 5149 962 346 38 30 chrX 146714948 146715445 -30258695 - L2 LINE L2 -1531 1783 1283 21 36 0 0 chrX 146715512 146715540 -30258600 + AT_rich Low_complexity Low_complexity 1 28 0 254 250 238 0 chrX 146715562 146715646 -30258494 + L2 LINE L2 3168 3271 -1 230 315 225 31 chrX 146715745 146716069 -30258071 - L2 LINE L2 -2404 910 524 1995 200 115 0 chrX 146716231 146716682 -30257458 + MLT1D LTR MaLR 1 503 -2 380 191 34 22 chrX 146717478 146717567 -30256573 + MARNA DNA Mariner 168 257 -329 650 297 64 93 chrX 146717899 146718342 -30255798 - L2 LINE L2 0 3272 2840 1717 180 7 86 chrX 146718342 146718747 -30255393 + MLT1A2 LTR MaLR 1 373 -1 650 297 64 93 chrX 146718747 146718809 -30255331 - L2 LINE L2 -432 2840 2778 341 304 8 40 chrX 146720157 146720282 -30253858 + MIR SINE MIR 34 154 -108 196 122 18 28 chrX 146720620 146720662 -30253478 - MIR SINE MIR -63 145 112 280 169 68 0 chrX 146720691 146720750 -30253390 + L1MA9 LINE L1 6228 6290 -22 225 0 0 0 chrX 146720991 146721016 -30253124 + (T)n Simple_repeat Simple_repeat 1 25 0 384 22 0 0 chrX 146721875 146721920 -30252220 + (CA)n Simple_repeat Simple_repeat 2 46 0 492 221 0 0 chrX 146722001 146722114 -30252026 + (TATATG)n Simple_repeat Simple_repeat 2 114 0 245 255 0 43 chrX 146722114 146722208 -30251932 + L1MC4 LINE L1 6614 6703 -1339 309 183 0 0 chrX 146722240 146722300 -30251840 + (CA)n Simple_repeat Simple_repeat 2 61 0 711 223 162 5 chrX 146722300 146722497 -30251643 + L2 LINE L2 2705 2932 -382 576 266 38 19 chrX 146722586 146722744 -30251396 + MIR SINE MIR 4 164 -98 1050 138 13 0 chrX 146722746 146722898 -30251242 + AluSg/x SINE Alu 134 287 -23 22 0 0 0 chrX 146722898 146722920 -30251220 + AT_rich Low_complexity Low_complexity 1 22 0 1173 312 175 30 chrX 146723029 146723791 -30250349 + L3 LINE CR1 483 1412 -165 2817 174 22 9 chrX 146723791 146724336 -30249804 + L1PB4 LINE L1 5598 6149 -7 1173 312 175 30 chrX 146724336 146724523 -30249617 + L3 LINE CR1 1412 1570 -7 589 221 262 0 chrX 146725129 146725373 -30248767 + MER69B DNA AcHobo 585 892 -334 2272 182 70 17 chrX 146725373 146725890 -30248250 - L1MC2 LINE L1 -9 6335 5792 1568 208 62 13 chrX 146725891 146726399 -30247741 - L1MC2 LINE L1 -743 5403 5058 437 218 214 29 chrX 146726401 146726676 -30247464 + MER69B DNA AcHobo 901 1226 0 193 294 35 35 chrX 146726943 146727028 -30247112 + L2 LINE L2 2421 2505 -809 247 342 148 0 chrX 146727072 146727221 -30246919 + L2 LINE L2 2914 3084 -188 434 289 200 12 chrX 146727424 146727853 -30246287 - L1MC/D LINE L1 -527 5594 5316 2314 141 33 0 chrX 146727981 146728371 -30245769 + MER57A LTR ERV1 1 403 0 196 271 0 0 chrX 146728474 146728522 -30245618 + L2 LINE L2 3146 3193 -79 1003 191 91 118 chrX 146728522 146729072 -30245068 + LTR49 LTR ERV1 5 539 -56 929 174 41 0 chrX 146729081 146729276 -30244864 - L1MA6 LINE L1 0 6300 6098 383 88 0 35 chrX 146729276 146729324 -30244816 - L1MA5 LINE L1 -426 5874 5827 * 3799 169 19 12 chrX 146729322 146730080 -30244060 + L1 LINE L1 4586 5348 -798 195 333 69 0 chrX 146730147 146730219 -30243921 + L2 LINE L2 3226 3302 -11 244 294 0 0 chrX 146730339 146730390 -30243750 - L2 LINE L2 -88 3184 3134 194 350 114 0 chrX 146731365 146731488 -30242652 - L2 LINE L2 -222 3050 2914 35 41 0 0 chrX 146732363 146732412 -30241728 + AT_rich Low_complexity Low_complexity 1 49 0 2239 160 63 10 chrX 146732963 146733375 -30240765 + Tigger2a DNA MER2_type 1 434 0 381 275 38 81 chrX 146733401 146733612 -30240528 - MIR SINE MIR -58 204 3 624 323 67 54 chrX 146733614 146734075 -30240065 - L2 LINE L2 -442 2872 2406 472 255 113 7 chrX 146734901 146735042 -30239098 + MIR SINE MIR 2 157 -105 181 226 167 36 chrX 146735109 146735193 -30238947 - L2 LINE L2 -10 3303 3209 26 50 0 0 chrX 146735378 146735418 -30238722 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrX 146736150 146736181 -30237959 + AT_rich Low_complexity Low_complexity 1 31 0 1765 211 13 13 chrX 146738667 146739056 -30235084 + L1MA10 LINE L1 4578 4966 -1180 2140 159 38 33 chrX 146739056 146739601 -30234539 + MLT2A2 LTR ERVL 1 554 0 5887 166 14 20 chrX 146739605 146740971 -30233169 + L1MA10 LINE L1 4966 6323 -11 406 312 52 65 chrX 146741029 146741282 -30232858 + HAL1 LINE L1 1155 1410 -1097 1006 198 110 61 chrX 146741282 146741414 -30232726 + MER2 DNA MER2_type 1 125 -219 1789 147 16 41 chrX 146741414 146741734 -30232406 - AluSx SINE Alu 0 312 1 1006 198 110 61 chrX 146741734 146741929 -30232211 + MER2 DNA MER2_type 125 344 0 406 312 52 65 chrX 146741929 146742246 -30231894 + HAL1 LINE L1 1410 1718 -789 22 0 0 0 chrX 146742312 146742334 -30231806 + AT_rich Low_complexity Low_complexity 1 22 0 640 299 48 22 chrX 146743130 146743361 -30230779 - MLT1J2 LTR MaLR -209 241 5 414 0 0 0 chrX 146743722 146743768 -30230372 + (CA)n Simple_repeat Simple_repeat 2 47 0 404 169 56 6 chrX 146743925 146744085 -30230055 + (TA)n Simple_repeat Simple_repeat 2 169 0 364 308 104 30 chrX 146744165 146744500 -30229640 + L1M4 LINE L1 2799 3158 -2988 500 345 60 40 chrX 146746163 146746462 -30227678 + L2 LINE L2 2968 3272 0 219 348 33 33 chrX 146746875 146746967 -30227173 + MIR SINE MIR 2 93 -169 303 216 49 39 chrX 146747105 146747207 -30226933 + L1M4 LINE L1 5265 5367 -779 190 159 14 130 chrX 146747537 146747606 -30226534 - L2 LINE L2 -27 3286 3226 382 388 30 0 chrX 146748867 146749032 -30225108 - MIR3 SINE MIR -9 199 30 704 225 80 38 chrX 146749286 146749499 -30224641 + MER58A DNA MER1_type 2 223 -1 597 263 92 48 chrX 146750101 146750394 -30223746 - HAL1 LINE L1 -629 1878 1573 2081 152 13 43 chrX 146750818 146751182 -30222958 - MLT1B LTR MaLR -5 385 32 1442 217 3 30 chrX 146751182 146751486 -30222654 + AluJb SINE Alu 1 296 -16 2081 152 13 43 chrX 146751486 146751517 -30222623 - MLT1B LTR MaLR -358 32 2 22 35 0 0 chrX 146753043 146753072 -30221068 + AT_rich Low_complexity Low_complexity 1 29 0 658 259 68 35 chrX 146753893 146754230 -30219910 + LTR35 LTR ERV1 339 618 0 619 277 235 26 chrX 146754604 146755063 -30219077 - LTR67 LTR ERVL 0 557 3 2300 143 20 0 chrX 146755146 146755503 -30218637 + THE1B LTR MaLR 1 364 0 8311 136 48 41 chrX 146755504 146757066 -30217074 + THE1B-int LTR MaLR 2 1574 -6 2582 118 3 0 chrX 146757068 146757431 -30216709 + THE1B LTR MaLR 1 364 0 1128 256 16 3 chrX 146758510 146758815 -30215325 + L1M4 LINE L1 4728 5036 -1110 1938 189 20 0 chrX 146759359 146759751 -30214389 + L1MB2 LINE L1 5479 5878 -293 649 231 31 98 chrX 146759872 146760128 -30214012 + L1MB2 LINE L1 5888 6126 -45 8446 179 79 30 chrX 146760246 146762181 -30211959 + L1MC3 LINE L1 5754 7782 -3 1245 177 35 120 chrX 146762281 146762879 -30211261 + L1M4 LINE L1 5098 5643 -541 1889 137 139 16 chrX 146762879 146763260 -30210880 + MSTA LTR MaLR 1 428 0 4399 185 32 13 chrX 146763260 146764099 -30210041 + MSTA-int LTR MaLR 1 855 -796 * 5349 162 19 14 chrX 146764096 146765050 -30209090 + L1PB1 LINE L1 4835 5798 -353 987 137 0 0 chrX 146765050 146765211 -30208929 + (CA)n Simple_repeat Simple_repeat 2 162 0 5349 162 19 14 chrX 146765211 146765559 -30208581 + L1PB1 LINE L1 5798 6143 -8 295 371 30 38 chrX 146766128 146766260 -30207880 - L2 LINE L2 -4 3268 3138 317 250 54 18 chrX 146766301 146766413 -30207727 + MIR3 SINE MIR 82 197 -11 501 268 74 26 chrX 146766868 146767058 -30207082 + MIR SINE MIR 15 213 -49 549 227 206 7 chrX 146767289 146767430 -30206710 - MER5A DNA MER1_type 0 189 21 344 229 45 67 chrX 146767932 146767963 -30206177 + L1MC/D LINE L1 5311 5341 -2467 1634 203 86 30 chrX 146767963 146768141 -30205999 + MSTA LTR MaLR 1 167 -261 2314 95 0 7 chrX 146768141 146768447 -30205693 + AluSx SINE Alu 1 304 -8 1634 203 86 30 chrX 146768447 146768673 -30205467 + MSTA LTR MaLR 167 428 0 8460 195 24 5 chrX 146768673 146770293 -30203847 + MSTA-int LTR MaLR 1 1650 -1 2112 167 86 2 chrX 146770294 146770689 -30203451 + MSTA LTR MaLR 1 428 0 344 229 45 67 chrX 146770689 146770833 -30203307 + L1MC/D LINE L1 5339 5485 -2323 708 261 55 8 chrX 146770974 146771227 -30202913 + L1MC/D LINE L1 5510 5774 -2034 43210 29 21 1 chrX 146772907 146778940 -30195200 + L1HS LINE L1 1 6155 0 231 133 0 0 chrX 146778941 146778986 -30195154 + (A)n Simple_repeat Simple_repeat 1 45 0 346 270 118 56 chrX 146779749 146780019 -30194121 + L1ME LINE L1 4747 5033 -1113 487 281 57 67 chrX 146780267 146780377 -30193763 + L1ME LINE L1 5386 5496 -625 817 184 180 14 chrX 146780377 146780655 -30193485 + MER33 DNA MER1_type 1 324 0 487 281 57 67 chrX 146780655 146780932 -30193208 + L1ME LINE L1 5496 5769 -352 315 0 0 0 chrX 146781034 146781069 -30193071 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chrX 146781187 146781228 -30192912 + AT_rich Low_complexity Low_complexity 1 41 0 2043 158 35 25 chrX 146781604 146782008 -30192132 - L1PB4 LINE L1 -1 6155 5748 3278 173 39 29 chrX 146782013 146783277 -30190863 - L1PB4 LINE L1 -328 5828 4566 987 281 112 33 chrX 146785944 146786072 -30188068 + L1M4 LINE L1 2122 2238 -3908 2146 96 0 11 chrX 146786072 146786386 -30187754 + AluSc SINE Alu 2 312 0 987 281 112 33 chrX 146786386 146787944 -30186196 + L1M4 LINE L1 2238 3987 -2159 716 187 14 22 chrX 146787981 146788120 -30186020 + AluJo SINE Alu 1 138 -174 512 230 0 26 chrX 146788269 146788382 -30185758 + MER92C LTR ERV1 1 110 -444 426 256 48 126 chrX 146788482 146788940 -30185200 + L1M4 LINE L1 4052 4452 -1694 399 31 62 15 chrX 146788940 146789005 -30185135 + L1MA2 LINE L1 6237 6304 0 426 256 48 126 chrX 146789005 146789155 -30184985 + L1M4 LINE L1 4452 4612 -1534 387 291 35 14 chrX 146789170 146789311 -30184829 + L1ME3 LINE L1 474 617 -5913 1359 278 120 27 chrX 146789766 146790682 -30183458 + L1ME3 LINE L1 1421 2421 -4119 620 246 152 6 chrX 146790684 146790956 -30183184 + L1ME3 LINE L1 5251 5557 -983 641 189 52 7 chrX 146790997 146791150 -30182990 - L1ME1 LINE L1 -271 5895 5736 * 2082 237 107 22 chrX 146791148 146791827 -30182313 + L1ME3 LINE L1 5588 6365 -191 1738 137 32 4 chrX 146791827 146792105 -30182035 + AluSc SINE Alu 1 286 -23 2082 237 107 22 chrX 146792105 146792314 -30181826 + L1ME3 LINE L1 6365 6555 -1 243 79 0 0 chrX 146792369 146792407 -30181733 + (TG)n Simple_repeat Simple_repeat 1 38 0 591 264 140 55 chrX 146792432 146793110 -30181030 + L1ME LINE L1 4624 5359 -787 334 261 45 38 chrX 146793105 146793262 -30180878 + L1ME3A LINE L1 5963 6120 -50 * 424 265 133 39 chrX 146793545 146793726 -30180414 + MIR SINE MIR 61 258 -4 257 297 138 21 chrX 146793816 146793961 -30180179 + MIR SINE MIR 81 242 -20 1783 197 109 0 chrX 146794146 146794532 -30179608 + MSTA LTR MaLR 1 428 0 7962 187 51 4 chrX 146794532 146796108 -30178032 + MSTA-int LTR MaLR 1 1651 0 1606 179 151 39 chrX 146796108 146796493 -30177647 + MSTA LTR MaLR 1 428 0 5214 184 38 4 chrX 146796503 146798143 -30175997 + L1PB4 LINE L1 4453 6156 0 195 184 145 79 chrX 146798313 146798389 -30175751 + MIR SINE MIR 72 152 -110 * 399 314 87 39 chrX 146798380 146798609 -30175531 - MIR SINE MIR -2 260 21 256 291 150 39 chrX 146799208 146799236 -30174904 + L1ME LINE L1 5546 5570 -551 2358 190 65 8 chrX 146799236 146799725 -30174415 - LTR53 LTR ERVL -2 517 1 256 291 150 39 chrX 146799725 146799930 -30174210 + L1ME LINE L1 5570 5805 -316 449 269 49 24 chrX 146800014 146800193 -30173947 + HAL1b LINE L1 1170 6117 -4 14146 171 74 12 chrX 146800311 146803152 -30170988 + L1PBa LINE L1 6 2668 -4194 360 0 0 0 chrX 146803152 146803192 -30170948 + (CA)n Simple_repeat Simple_repeat 2 41 0 14146 171 74 12 chrX 146803192 146803583 -30170557 + L1PBa LINE L1 2668 3033 -3829 2553 74 0 0 chrX 146803583 146803894 -30170246 + AluY SINE Alu 1 311 0 14146 171 74 12 chrX 146803894 146804411 -30169729 + L1PBa LINE L1 3033 3516 -3346 2054 138 3 3 chrX 146804411 146804722 -30169418 + AluY SINE Alu 1 311 0 14146 171 74 12 chrX 146804722 146805283 -30168857 + L1PBa LINE L1 3516 4591 -2271 225 186 102 0 chrX 147005304 147005363 -29968777 - L1MC/D LINE L1 -1967 5818 5754 649 231 31 98 chrX 147005481 147005737 -29968403 - L1MB2 LINE L1 -45 6126 5888 1938 189 20 0 chrX 147005858 147006250 -29967890 - L1MB2 LINE L1 -293 5878 5479 1128 256 16 3 chrX 147006794 147007099 -29967041 - L1MB2 LINE L1 -1110 5036 4728 2582 118 3 0 chrX 147008178 147008541 -29965599 - THE1B LTR MaLR 0 364 1 8311 136 48 41 chrX 147008543 147010105 -29964035 - THE1B-int LTR MaLR -6 1574 2 2300 143 20 0 chrX 147010106 147010463 -29963677 - THE1B LTR MaLR 0 364 1 619 277 235 26 chrX 147010546 147011005 -29963135 + LTR67 LTR ERVL 3 557 0 658 259 68 35 chrX 147011379 147011716 -29962424 - LTR35 LTR ERV1 0 677 339 22 35 0 0 chrX 147012537 147012566 -29961574 + AT_rich Low_complexity Low_complexity 1 29 0 2081 152 13 43 chrX 147014092 147014123 -29960017 + MLT1B LTR MaLR 2 32 -358 1442 217 3 30 chrX 147014123 147014427 -29959713 - AluJb SINE Alu -16 296 1 2081 152 13 43 chrX 147014427 147014791 -29959349 + MLT1B LTR MaLR 32 385 -5 597 263 92 48 chrX 147015215 147015508 -29958632 + HAL1 LINE L1 1573 1878 -629 704 225 80 38 chrX 147016110 147016323 -29957817 - MER58A DNA MER1_type -1 223 2 382 388 30 0 chrX 147016577 147016742 -29957398 + MIR3 SINE MIR 30 199 -9 190 159 14 130 chrX 147018003 147018072 -29956068 + L2 LINE L2 3226 3286 -27 303 216 49 39 chrX 147018402 147018504 -29955636 - L1M4 LINE L1 -779 5367 5265 219 348 33 33 chrX 147018642 147018734 -29955406 - MIR SINE MIR -169 93 2 500 345 60 40 chrX 147019147 147019446 -29954694 - L2 LINE L2 0 3272 2968 356 301 95 40 chrX 147020988 147021313 -29952827 - L1M4 LINE L1 -3005 3141 2799 404 169 56 6 chrX 147021393 147021553 -29952587 + (TA)n Simple_repeat Simple_repeat 2 169 0 414 0 0 0 chrX 147021710 147021756 -29952384 + (TG)n Simple_repeat Simple_repeat 2 47 0 640 299 48 22 chrX 147022117 147022348 -29951792 + MLT1J2 LTR MaLR 5 241 -209 22 0 0 0 chrX 147023144 147023166 -29950974 + AT_rich Low_complexity Low_complexity 1 22 0 406 312 52 65 chrX 147023232 147023549 -29950591 - HAL1 LINE L1 -789 1718 1410 1006 198 110 61 chrX 147023549 147023744 -29950396 - MER2 DNA MER2_type 0 344 125 1789 147 16 41 chrX 147023744 147024064 -29950076 + AluSx SINE Alu 1 312 0 1006 198 110 61 chrX 147024064 147024196 -29949944 - MER2 DNA MER2_type -219 125 1 406 312 52 65 chrX 147024196 147024449 -29949691 - HAL1 LINE L1 -1097 1410 1155 5887 166 14 20 chrX 147024507 147025873 -29948267 - L1MA10 LINE L1 -11 6323 4966 2140 159 38 33 chrX 147025877 147026422 -29947718 - MLT2A2 LTR ERVL 0 554 1 1765 211 13 13 chrX 147026422 147026811 -29947329 - L1MA10 LINE L1 -1180 4966 4578 24 32 0 0 chrX 147029296 147029327 -29944813 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chrX 147030059 147030099 -29944041 + AT_rich Low_complexity Low_complexity 1 40 0 181 226 167 36 chrX 147030284 147030368 -29943772 + L2 LINE L2 3209 3303 -10 472 255 113 7 chrX 147030435 147030576 -29943564 - MIR SINE MIR -105 157 2 624 323 67 54 chrX 147031402 147031863 -29942277 + L2 LINE L2 2406 2872 -442 381 275 38 81 chrX 147031865 147032076 -29942064 + MIR SINE MIR 3 204 -58 2239 160 63 10 chrX 147032102 147032514 -29941626 - Tigger2a DNA MER2_type 0 434 1 35 41 0 0 chrX 147033065 147033114 -29941026 + AT_rich Low_complexity Low_complexity 1 49 0 194 350 114 0 chrX 147033989 147034112 -29940028 + L2 LINE L2 2914 3050 -222 244 294 0 0 chrX 147035087 147035138 -29939002 + L2 LINE L2 3134 3184 -88 195 333 69 0 chrX 147035258 147035330 -29938810 - L2 LINE L2 -11 3302 3226 3799 169 19 12 chrX 147035397 147036155 -29937985 - L1 LINE L1 -798 5348 4586 411 70 0 18 chrX 147036153 147036205 -29937935 + L1MA5 LINE L1 5827 5878 -418 * 929 174 41 0 chrX 147036205 147036396 -29937744 + L1MA6 LINE L1 6098 6300 0 1003 191 91 118 chrX 147036405 147036955 -29937185 - LTR49 LTR ERV1 -56 539 5 196 271 0 0 chrX 147036955 147037003 -29937137 - L2 LINE L2 -79 3193 3146 2314 141 33 0 chrX 147037106 147037496 -29936644 - MER57A LTR ERV1 0 403 1 450 253 169 25 chrX 147037624 147037896 -29936244 + L1MC/D LINE L1 5316 5616 -555 472 255 113 7 chrX 147038809 147038950 -29935190 + MIR SINE MIR 2 157 -105 181 226 167 36 chrX 147039017 147039101 -29935039 - L2 LINE L2 -10 3303 3209 26 50 0 0 chrX 147039286 147039326 -29934814 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chrX 147040058 147040089 -29934051 + AT_rich Low_complexity Low_complexity 1 31 0 1765 211 13 13 chrX 147042575 147042964 -29931176 + L1MA10 LINE L1 4578 4966 -1180 2140 159 38 33 chrX 147042964 147043509 -29930631 + MLT2A2 LTR ERVL 1 554 0 5887 166 14 20 chrX 147043513 147044879 -29929261 + L1MA10 LINE L1 4966 6323 -11 406 312 52 65 chrX 147044937 147045190 -29928950 + HAL1 LINE L1 1155 1410 -1097 1006 198 110 61 chrX 147045190 147045322 -29928818 + MER2 DNA MER2_type 1 125 -219 1789 147 16 41 chrX 147045322 147045642 -29928498 - AluSx SINE Alu 0 312 1 1006 198 110 61 chrX 147045642 147045837 -29928303 + MER2 DNA MER2_type 125 344 0 406 312 52 65 chrX 147045837 147046154 -29927986 + HAL1 LINE L1 1410 1718 -789 22 0 0 0 chrX 147046220 147046242 -29927898 + AT_rich Low_complexity Low_complexity 1 22 0 640 299 48 22 chrX 147047038 147047269 -29926871 - MLT1J2 LTR MaLR -209 241 5 414 0 0 0 chrX 147047630 147047676 -29926464 + (CA)n Simple_repeat Simple_repeat 2 47 0 404 169 56 6 chrX 147047833 147047993 -29926147 + (TA)n Simple_repeat Simple_repeat 2 169 0 356 301 95 40 chrX 147048073 147048398 -29925742 + L1M4 LINE L1 2799 3141 -3005 500 345 60 40 chrX 147049940 147050239 -29923901 + L2 LINE L2 2968 3272 0 219 348 33 33 chrX 147050652 147050744 -29923396 + MIR SINE MIR 2 93 -169 303 216 49 39 chrX 147050882 147050984 -29923156 + L1M4 LINE L1 5265 5367 -779 190 159 14 130 chrX 147051314 147051383 -29922757 - L2 LINE L2 -27 3286 3226 382 388 30 0 chrX 147052644 147052809 -29921331 - MIR3 SINE MIR -9 199 30 704 225 80 38 chrX 147053063 147053276 -29920864 + MER58A DNA MER1_type 2 223 -1 597 263 92 48 chrX 147053878 147054171 -29919969 - HAL1 LINE L1 -629 1878 1573 2081 152 13 43 chrX 147054595 147054959 -29919181 - MLT1B LTR MaLR -5 385 32 1442 217 3 30 chrX 147054959 147055263 -29918877 + AluJb SINE Alu 1 296 -16 2081 152 13 43 chrX 147055263 147055294 -29918846 - MLT1B LTR MaLR -358 32 2 22 35 0 0 chrX 147056820 147056849 -29917291 + AT_rich Low_complexity Low_complexity 1 29 0 658 259 68 35 chrX 147057670 147058007 -29916133 + LTR35 LTR ERV1 339 618 0 619 277 235 26 chrX 147058381 147058840 -29915300 - LTR67 LTR ERVL 0 557 3 2300 143 20 0 chrX 147058923 147059280 -29914860 + THE1B LTR MaLR 1 364 0 8311 136 48 41 chrX 147059281 147060843 -29913297 + THE1B-int LTR MaLR 2 1574 -6 2582 118 3 0 chrX 147060845 147061208 -29912932 + THE1B LTR MaLR 1 364 0 1128 256 16 3 chrX 147062287 147062592 -29911548 + L1M4 LINE L1 4728 5036 -1110 1938 189 20 0 chrX 147063136 147063528 -29910612 + L1MB2 LINE L1 5479 5878 -293 649 231 31 98 chrX 147063649 147063905 -29910235 + L1MB2 LINE L1 5888 6126 -45 8446 179 79 30 chrX 147064023 147065958 -29908182 + L1MC3 LINE L1 5754 7782 -3 1245 178 37 121 chrX 147066058 147066656 -29907484 + L1M4 LINE L1 5098 5643 -535 1889 137 139 16 chrX 147066656 147067037 -29907103 + MSTA LTR MaLR 1 428 0 4399 185 32 13 chrX 147067037 147067876 -29906264 + MSTA-int LTR MaLR 1 855 -796 * 5349 162 19 14 chrX 147067873 147068827 -29905313 + L1PB1 LINE L1 4835 5798 -353 987 137 0 0 chrX 147068827 147068988 -29905152 + (CA)n Simple_repeat Simple_repeat 2 162 0 5349 162 19 14 chrX 147068988 147069336 -29904804 + L1PB1 LINE L1 5798 6143 -8 295 371 30 38 chrX 147069905 147070037 -29904103 - L2 LINE L2 -4 3268 3138 317 250 54 18 chrX 147070078 147070190 -29903950 + MIR3 SINE MIR 82 197 -11 501 268 74 26 chrX 147070645 147070835 -29903305 + MIR SINE MIR 15 213 -49 549 227 206 7 chrX 147071066 147071207 -29902933 - MER5A DNA MER1_type 0 189 21 344 229 45 67 chrX 147071709 147071740 -29902400 + L1MC/D LINE L1 5311 5341 -2467 1609 205 86 30 chrX 147071740 147071918 -29902222 + MSTA LTR MaLR 1 167 -261 2339 92 0 7 chrX 147071918 147072224 -29901916 + AluSx SINE Alu 1 304 -8 1609 205 86 30 chrX 147072224 147072450 -29901690 + MSTA LTR MaLR 167 428 0 8460 195 24 5 chrX 147072450 147074070 -29900070 + MSTA-int LTR MaLR 1 1650 -1 2112 167 86 2 chrX 147074071 147074466 -29899674 + MSTA LTR MaLR 1 428 0 344 229 45 67 chrX 147074466 147074610 -29899530 + L1MC/D LINE L1 5339 5485 -2323 708 261 55 8 chrX 147074751 147075004 -29899136 + L1MC/D LINE L1 5510 5774 -2034 43210 29 21 1 chrX 147076684 147082717 -29891423 + L1HS LINE L1 1 6155 0 231 133 0 0 chrX 147082718 147082763 -29891377 + (A)n Simple_repeat Simple_repeat 1 45 0 346 270 118 56 chrX 147083526 147083796 -29890344 + L1ME LINE L1 4747 5033 -1113 487 281 57 67 chrX 147084044 147084154 -29889986 + L1ME LINE L1 5386 5496 -625 817 184 180 14 chrX 147084154 147084432 -29889708 + MER33 DNA MER1_type 1 324 0 487 281 57 67 chrX 147084432 147084709 -29889431 + L1ME LINE L1 5496 5769 -352 315 0 0 0 chrX 147084811 147084846 -29889294 + (CA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chrX 147084964 147085005 -29889135 + AT_rich Low_complexity Low_complexity 1 41 0 2043 158 35 25 chrX 147085380 147085784 -29888356 - L1PB4 LINE L1 -1 6155 5748 3278 173 39 29 chrX 147085789 147087053 -29887087 - L1PB4 LINE L1 -328 5828 4566 987 281 112 33 chrX 147089720 147089848 -29884292 + L1M4 LINE L1 2122 2238 -3908 2146 96 0 11 chrX 147089848 147090162 -29883978 + AluSc SINE Alu 2 312 0 987 281 112 33 chrX 147090162 147091720 -29882420 + L1M4 LINE L1 2238 3987 -2159 716 187 14 22 chrX 147091757 147091896 -29882244 + AluJo SINE Alu 1 138 -174 512 230 0 26 chrX 147092045 147092158 -29881982 + MER92C LTR ERV1 1 110 -444 426 256 48 126 chrX 147092258 147092716 -29881424 + L1M4 LINE L1 4052 4452 -1694 399 31 62 15 chrX 147092716 147092781 -29881359 + L1MA2 LINE L1 6237 6304 0 426 256 48 126 chrX 147092781 147092931 -29881209 + L1M4 LINE L1 4452 4612 -1534 387 291 35 14 chrX 147092946 147093087 -29881053 + L1ME3 LINE L1 474 617 -5913 1359 278 120 27 chrX 147093542 147094458 -29879682 + L1ME3 LINE L1 1421 2421 -4119 620 246 152 6 chrX 147094460 147094732 -29879408 + L1ME3 LINE L1 5251 5557 -983 641 189 52 7 chrX 147094773 147094926 -29879214 - L1ME1 LINE L1 -271 5895 5736 * 2082 237 107 22 chrX 147094924 147095603 -29878537 + L1ME3 LINE L1 5588 6365 -191 1738 137 32 4 chrX 147095603 147095881 -29878259 + AluSc SINE Alu 1 286 -23 2082 237 107 22 chrX 147095881 147096090 -29878050 + L1ME3 LINE L1 6365 6555 -1 243 79 0 0 chrX 147096145 147096183 -29877957 + (TG)n Simple_repeat Simple_repeat 1 38 0 591 264 140 55 chrX 147096208 147096886 -29877254 + L1ME LINE L1 4624 5359 -787 334 261 45 38 chrX 147096881 147097038 -29877102 + L1ME3A LINE L1 5963 6120 -50 * 424 265 133 39 chrX 147097321 147097502 -29876638 + MIR SINE MIR 61 258 -4 257 297 138 21 chrX 147097592 147097737 -29876403 + MIR SINE MIR 81 242 -20 1783 197 109 0 chrX 147097922 147098308 -29875832 + MSTA LTR MaLR 1 428 0 7962 187 51 4 chrX 147098308 147099884 -29874256 + MSTA-int LTR MaLR 1 1651 0 1606 179 151 39 chrX 147099884 147100269 -29873871 + MSTA LTR MaLR 1 428 0 5214 184 38 4 chrX 147100279 147101919 -29872221 + L1PB4 LINE L1 4453 6156 0 195 184 145 79 chrX 147102089 147102165 -29871975 + MIR SINE MIR 72 152 -110 * 399 314 87 39 chrX 147102156 147102385 -29871755 - MIR SINE MIR -2 260 21 256 291 150 39 chrX 147102984 147103012 -29871128 + L1ME LINE L1 5546 5570 -551 2358 190 65 8 chrX 147103012 147103501 -29870639 - LTR53 LTR ERVL -2 517 1 256 291 150 39 chrX 147103501 147103706 -29870434 + L1ME LINE L1 5570 5805 -316 449 269 49 24 chrX 147103790 147103969 -29870171 + HAL1b LINE L1 1170 6117 -4 14156 172 63 10 chrX 147104087 147106928 -29867212 + L1PB2 LINE L1 6 2696 -4171 360 0 0 0 chrX 147106928 147106968 -29867172 + (CA)n Simple_repeat Simple_repeat 2 41 0 14156 172 63 10 chrX 147106968 147107359 -29866781 + L1PB2 LINE L1 2696 3065 -3802 2553 74 0 0 chrX 147107359 147107670 -29866470 + AluY SINE Alu 1 311 0 14156 172 63 10 chrX 147107670 147108187 -29865953 + L1PB2 LINE L1 3065 3553 -3314 2054 138 3 3 chrX 147108187 147108498 -29865642 + AluY SINE Alu 1 311 0 14156 172 63 10 chrX 147108498 147111270 -29862870 + L1PB2 LINE L1 3553 6867 0 1069 193 17 105 chrX 147111449 147111745 -29862395 + MLT1D LTR MaLR 236 505 0 1230 189 19 45 chrX 147112448 147112712 -29861428 + MLT1A1 LTR MaLR 5 261 -104 1097 286 25 4 chrX 147113433 147113709 -29860431 - LTR16B LTR ERVL -168 296 15 3222 268 91 21 chrX 147113725 147113990 -29860150 - L2 LINE L2 -459 2855 2610 2143 166 40 8 chrX 147113990 147114370 -29859770 - MSTD LTR MaLR 0 396 5 3222 268 91 21 chrX 147114370 147115180 -29858960 - L2 LINE L2 -704 2610 1705 453 370 77 27 chrX 147115262 147115924 -29858216 + L1PB4 LINE L1 14 517 -6333 3892 240 42 88 chrX 147116474 147118085 -29856055 + L1PB4 LINE L1 1170 2706 -4143 4978 170 55 9 chrX 147118086 147119593 -29854547 + L1PB4 LINE L1 5289 6858 -1 937 229 75 0 chrX 147119593 147119794 -29854346 - MER58A DNA MER1_type -8 216 1 246 343 0 0 chrX 147119839 147119909 -29854231 - L2 LINE L2 -15 3257 3188 223 222 81 61 chrX 147120802 147120901 -29853239 + MIR SINE MIR 86 186 -76 441 301 48 30 chrX 147121023 147121189 -29852951 - LTR67 LTR ERVL -269 288 120 680 216 278 70 chrX 147121323 147121490 -29852650 + MLT1E2 LTR MaLR 52 183 -443 2177 101 3 0 chrX 147121490 147121776 -29852364 + AluSc SINE Alu 1 287 -22 680 216 278 70 chrX 147121776 147121954 -29852186 + MLT1E2 LTR MaLR 183 323 -303 1919 185 62 55 chrX 147121954 147122441 -29851699 + LTR22B LTR ERVK 3 492 0 680 216 278 70 chrX 147122441 147122482 -29851658 + MLT1E2 LTR MaLR 323 520 -106 5333 157 68 15 chrX 147122484 147124149 -29849991 + L1PB1 LINE L1 4021 5817 -334 378 0 0 0 chrX 147124149 147124191 -29849949 + (CA)n Simple_repeat Simple_repeat 2 43 0 5333 157 68 15 chrX 147124191 147124544 -29849596 + L1PB1 LINE L1 5817 6150 -1 269 309 0 36 chrX 147124565 147124649 -29849491 - MIR SINE MIR -83 125 45 21 36 0 0 chrX 147124672 147124700 -29849440 + AT_rich Low_complexity Low_complexity 1 28 0 1250 270 80 11 chrX 147125922 147126351 -29847789 + L2 LINE L2 2524 2977 -336 575 333 63 10 chrX 147126368 147126668 -29847472 - MER68 LTR ERV1 -24 538 223 728 229 37 134 chrX 147127159 147127561 -29846579 + L2 LINE L2 2949 3311 -2 387 138 0 15 chrX 147127576 147127641 -29846499 - MIR SINE MIR -109 153 90 1121 235 8 12 chrX 147127883 147128138 -29846002 - MIR SINE MIR 0 262 9 2012 142 33 8 chrX 147128421 147128781 -29845359 + L1PA16 LINE L1 5789 6157 -9 387 0 0 0 chrX 147128849 147128892 -29845248 + (TA)n Simple_repeat Simple_repeat 2 44 0 24 53 0 0 chrX 147129294 147129332 -29844808 + AT_rich Low_complexity Low_complexity 1 38 0 258 105 0 0 chrX 147129599 147129637 -29844503 + (CATATA)n Simple_repeat Simple_repeat 5 42 0 259 316 181 0 chrX 147131487 147131620 -29842520 + MIR3 SINE MIR 46 202 -6 1225 238 154 23 chrX 147132861 147133302 -29840838 + MLT1D LTR MaLR 2 500 -5 197 231 10 135 chrX 147134171 147134275 -29839865 + MIR SINE MIR 61 151 -111 3868 182 87 34 chrX 147134360 147135611 -29838529 - L1MA8 LINE L1 0 6291 4904 2017 130 0 7 chrX 147135611 147135895 -29838245 - AluSx SINE Alu -30 282 1 3868 182 87 34 chrX 147135895 147136374 -29837766 - L1MA8 LINE L1 -1387 4904 4452 270 298 53 32 chrX 147136374 147136468 -29837672 - L2 LINE L2 -224 3048 2953 879 285 181 9 chrX 147138774 147139199 -29834941 - L2 LINE L2 -5 3308 2811 760 176 93 16 chrX 147139308 147139490 -29834650 - MER33 DNA MER1_type -128 196 1 375 264 16 64 chrX 147139697 147139822 -29834318 + L2 LINE L2 3189 3307 -6 483 294 189 31 chrX 147139851 147140327 -29833813 + L2 LINE L2 1437 1987 -1327 882 295 135 30 chrX 147140432 147141190 -29832950 + L2 LINE L2 2461 3313 0 250 244 134 42 chrX 147141764 147141883 -29832257 + MIR SINE MIR 131 260 -2 259 273 134 13 chrX 147141967 147142147 -29831993 - MIR SINE MIR -13 249 47 2241 99 0 7 chrX 147142149 147142451 -29831689 + AluSg SINE Alu 1 300 -10 582 175 238 0 chrX 147142484 147142627 -29831513 + MER58A DNA MER1_type 46 222 -2 345 246 6 149 chrX 147144493 147144668 -29829472 + LTR67 LTR ERVL 7 156 -401 266 262 115 57 chrX 147144696 147144818 -29829322 - MER5A DNA MER1_type -25 164 36 436 201 118 95 chrX 147144862 147144986 -29829154 + MER5B DNA MER1_type 5 136 -42 366 91 0 0 chrX 147144986 147145041 -29829099 + (TG)n Simple_repeat Simple_repeat 1 55 0 436 201 118 95 chrX 147145041 147145085 -29829055 + MER5B DNA MER1_type 136 177 -1 514 334 89 34 chrX 147145093 147145476 -29828664 + LTR67 LTR ERVL 153 556 -1 267 286 71 12 chrX 147145535 147145619 -29828521 + MIR SINE MIR 101 189 -73 2337 73 0 41 chrX 147146332 147146646 -29827494 + AluY SINE Alu 1 301 -10 6506 88 33 0 chrX 147146954 147148028 -29826112 - L1PA11 LINE L1 -3 6171 5087 519 323 70 85 chrX 147148281 147148760 -29825380 - L1MEd LINE L1 -4875 1244 778 1538 120 29 72 chrX 147148760 147149036 -29825104 - AluSg SINE Alu -3 307 44 519 323 70 85 chrX 147149036 147149299 -29824841 - L1MEd LINE L1 -5341 778 513 520 250 150 11 chrX 147149413 147149593 -29824547 + MER58C DNA MER1_type 11 215 0 2502 52 0 43 chrX 147149898 147150223 -29823917 + AluY SINE Alu 1 311 0 536 281 124 55 chrX 147150273 147150636 -29823504 - L1MEd LINE L1 -5088 1031 644 314 250 24 12 chrX 147151305 147151389 -29822751 + MLT1I LTR MaLR 121 205 -204 620 294 5 5 chrX 147151717 147151904 -29822236 - MIR SINE MIR -4 258 72 192 248 158 50 chrX 147151963 147152064 -29822076 - L2 LINE L2 -1 3312 3201 225 143 0 0 chrX 147152636 147152678 -29821462 + LTR66 LTR ERVL 398 439 -171 501 221 35 9 chrX 147152686 147152799 -29821341 - MIR SINE MIR -73 189 74 405 213 170 48 chrX 147153256 147153341 -29820799 - L2 LINE L2 0 3313 3240 279 0 0 0 chrX 147153341 147153372 -29820768 + (CA)n Simple_repeat Simple_repeat 2 32 0 405 213 170 48 chrX 147153372 147153474 -29820666 - L2 LINE L2 -73 3240 3103 * 4202 280 63 32 chrX 147153464 147154909 -29819231 - L2 LINE L2 -408 2906 1418 410 349 7 0 chrX 147155929 147156078 -29818062 - MLT1J2 LTR MaLR -38 412 263 1315 176 11 27 chrX 147156130 147156392 -29817748 - L1MB1 LINE L1 -51 6138 5881 979 152 44 5 chrX 147156393 147156597 -29817543 + L1MA10 LINE L1 6122 6333 -1 290 227 52 41 chrX 147156634 147156731 -29817409 - MLT1J2 LTR MaLR -294 156 59 895 266 141 84 chrX 147156781 147157293 -29816847 + MLT1H1 LTR MaLR 1 554 -1 214 215 77 0 chrX 147157606 147157671 -29816469 + GA-rich Low_complexity Low_complexity 2 71 0 327 330 149 17 chrX 147157970 147158151 -29815989 - L2 LINE L2 -244 3028 2793 1290 122 89 14 chrX 147158151 147158365 -29815775 - MER30 DNA MER1_type 0 230 1 327 330 149 17 chrX 147158365 147158446 -29815694 - L2 LINE L2 -479 2793 2724 239 333 171 0 chrX 147158577 147158682 -29815458 - L2 LINE L2 -4 3268 3146 206 167 21 0 chrX 147159120 147159168 -29814972 + (CCCA)n Simple_repeat Simple_repeat 1 49 0 4166 91 19 13 chrX 147159467 147160081 -29814059 - L1PA14 LINE L1 -2 6159 5542 249 207 17 17 chrX 147161173 147161231 -29812909 - L2 LINE L2 -8 3264 3207 814 209 0 13 chrX 147161241 147161399 -29812741 - MER45A DNA AcHobo -7 171 16 442 336 56 14 chrX 147161591 147161734 -29812406 - L2 LINE L2 -1 3271 3123 348 316 90 86 chrX 147161734 147161978 -29812162 - L2 LINE L2 -1 3271 3027 188 310 142 18 chrX 147161988 147162101 -29812039 - L2 LINE L2 -514 2800 2674 801 207 49 0 chrX 147163265 147163429 -29810711 - MER5B DNA MER1_type -6 172 1 1089 216 4 18 chrX 147165134 147165361 -29808779 + MER58A DNA MER1_type 1 224 0 479 247 156 0 chrX 147165372 147165526 -29808614 - MER5A DNA MER1_type -3 186 9 278 271 115 0 chrX 147165603 147165725 -29808415 + MIR SINE MIR 122 257 -5 389 207 35 0 chrX 147166408 147166495 -29807645 + L1MA10 LINE L1 6235 6324 -10 2224 56 4 0 chrX 147166563 147166831 -29807309 - AluY SINE Alu -12 299 31 725 191 81 48 chrX 147167005 147167214 -29806926 + LTR50 LTR ERVL 1 216 -579 292 284 12 0 chrX 147167272 147167353 -29806787 + LTR33A LTR ERVL 428 509 -14 194 159 68 45 chrX 147167614 147167658 -29806482 + MIR SINE MIR 6 50 -212 1023 200 26 0 chrX 147167660 147167850 -29806290 - MER3 DNA MER1_type -14 195 1 643 285 47 0 chrX 147167860 147168032 -29806108 + MIR SINE MIR 54 233 -29 473 299 52 19 chrX 147168819 147169090 -29805050 + L2 LINE L2 1825 2104 -1210 474 350 22 2 chrX 147169090 147169459 -29804681 + L2 LINE L2 2670 3042 -271 322 156 16 16 chrX 147169459 147169523 -29804617 + MER46C DNA MER2_type 92 155 -183 1923 205 39 19 chrX 147169745 147170155 -29803985 - MER47B DNA MER2_type 0 418 1 2873 118 12 2 chrX 147170324 147170748 -29803392 - MSTC LTR MaLR 0 428 1 234 297 0 69 chrX 147171251 147171352 -29802788 - MIR SINE MIR -14 248 155 228 248 48 38 chrX 147171357 147171462 -29802678 - MLT2E LTR ERVL -18 610 505 247 307 23 23 chrX 147171606 147171694 -29802446 - MLT2E LTR ERVL -497 131 44 275 148 283 3 chrX 147171790 147171877 -29802263 - MIR SINE MIR -68 140 38 28 0 0 0 chrX 147172213 147172241 -29801899 + AT_rich Low_complexity Low_complexity 1 28 0 611 213 33 22 chrX 147173681 147173864 -29800276 - MER114 LTR ERV -454 194 10 673 279 65 19 chrX 147174342 147174664 -29799476 - L1MC4 LINE L1 -17 8025 7689 234 323 97 0 chrX 147174694 147174787 -29799353 - L2 LINE L2 -954 2360 2259 202 236 169 45 chrX 147175615 147175704 -29798436 - L2 LINE L2 -5 3267 3168 * 360 289 80 68 chrX 147175683 147175994 -29798146 + L2 LINE L2 1972 2286 -1028 282 125 0 0 chrX 147176144 147176192 -29797948 + (CTTTG)n Simple_repeat Simple_repeat 2 49 0 739 318 70 72 chrX 147176700 147177677 -29796463 + L2 LINE L2 2285 3270 -2 757 218 95 22 chrX 147178286 147178600 -29795540 + MER33 DNA MER1_type 1 324 0 231 169 17 17 chrX 147178886 147178945 -29795195 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 189 0 0 0 chrX 147179083 147179104 -29795036 + (CA)n Simple_repeat Simple_repeat 1 21 0 1784 172 3 7 chrX 147179343 147179634 -29794506 - AluJb SINE Alu -22 290 1 1449 97 19 32 chrX 147179902 147180118 -29794022 - AluSx SINE Alu -65 247 35 32 26 0 0 chrX 147182328 147182367 -29791773 + AT_rich Low_complexity Low_complexity 1 39 0 363 143 36 0 chrX 147182401 147182457 -29791683 - MIR SINE MIR -114 148 91 423 264 39 31 chrX 147183349 147183478 -29790662 - MIR3 SINE MIR -13 195 66 1535 138 150 4 chrX 147183990 147184250 -29789890 - AluSx SINE Alu -2 300 3 247 176 40 27 chrX 147184447 147184521 -29789619 - L1ME4a LINE L1 -54 6067 5993 806 331 94 14 chrX 147184627 147184998 -29789142 + L2 LINE L2 2882 3282 -31 570 332 86 14 chrX 147185777 147185997 -29788143 + MIR SINE MIR 13 248 -14 188 371 50 36 chrX 147186051 147186191 -29787949 - L2 LINE L2 -13 3300 3159 189 196 0 0 chrX 147186629 147186675 -29787465 + A-rich Low_complexity Low_complexity 1 46 0 1150 249 105 44 chrX 147187212 147187690 -29786450 + MLT1J LTR MaLR 5 511 0 21 0 0 0 chrX 147188200 147188221 -29785919 + AT_rich Low_complexity Low_complexity 1 21 0 2448 169 31 13 chrX 147188308 147188757 -29785383 + MSTB2 LTR MaLR 1 457 0 248 247 143 13 chrX 147189082 147189159 -29784981 - L2 LINE L2 0 3272 3186 4899 218 26 30 chrX 147190141 147190783 -29783357 - L1MD2 LINE L1 -22 6337 5694 2244 109 29 35 chrX 147190783 147191160 -29782980 + THE1C LTR MaLR 1 375 0 4899 218 26 30 chrX 147191160 147192780 -29781360 - L1MD2 LINE L1 -665 5694 4075 1066 273 82 12 chrX 147192816 147193403 -29780737 - L1MD2 LINE L1 -2456 3690 3063 2349 134 4 153 chrX 147193498 147194035 -29780105 - LTR32 LTR ERVL 0 471 15 6103 71 4 14 chrX 147195731 147196519 -29777621 + LTR17 LTR ERV1 1 780 0 1995 139 7 3 chrX 147197363 147197657 -29776483 - AluJb SINE Alu -17 295 1 371 333 10 10 chrX 147197716 147197914 -29776226 + LTR24C-int LTR ERV1 4257 4454 -500 473 248 44 7 chrX 147198224 147198361 -29775779 + LTR24C-int LTR ERV1 4982 5123 0 2463 154 147 0 chrX 147198366 147198912 -29775228 + LTR24C LTR ERV1 10 635 0 1525 210 104 77 chrX 147199028 147199879 -29774261 - LTR1B LTR ERV1 -6 1014 1 2285 37 0 54 chrX 147201099 147201393 -29772747 - AluY SINE Alu 0 311 34 226 255 0 0 chrX 147201424 147201475 -29772665 + MER117 DNA MER1_type 96 146 -51 21 0 0 0 chrX 147201827 147201848 -29772292 + AT_rich Low_complexity Low_complexity 1 21 0 449 259 77 84 chrX 147202850 147203147 -29770993 + MLT1I LTR MaLR 115 409 0 218 283 151 19 chrX 147203848 147203954 -29770186 - MIR SINE MIR -12 250 131 1829 174 78 69 chrX 147203980 147204507 -29769633 - MLT1E2 LTR MaLR -6 620 39 2416 201 13 30 chrX 147205100 147205636 -29768504 - MER87 LTR ERV1 -14 527 1 259 306 99 25 chrX 147205857 147205978 -29768162 - L2 LINE L2 0 3272 3143 871 191 6 6 chrX 147206076 147206254 -29767886 + L1MB8 LINE L1 5384 5561 -613 1029 113 0 0 chrX 147206254 147206437 -29767703 + AluY SINE Alu 141 323 0 497 168 0 3 chrX 147206438 147206540 -29767600 + L1MB8 LINE L1 5552 5651 -515 1651 170 28 112 chrX 147206594 147207128 -29767012 + L1MB8 LINE L1 5634 6122 -56 269 266 142 9 chrX 147207383 147207496 -29766644 + MIR SINE MIR 85 212 -50 241 299 37 9 chrX 147207499 147207606 -29766534 + L1ME4a LINE L1 5973 6082 -39 605 258 74 6 chrX 147207782 147207945 -29766195 + MIR SINE MIR 76 249 -13 214 175 0 25 chrX 147207962 147208002 -29766138 + GA-rich Low_complexity Low_complexity 3 41 0 192 40 0 0 chrX 147208422 147208447 -29765693 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 559 233 39 39 chrX 147208503 147208683 -29765457 - MIR3 SINE MIR -4 204 25 204 245 0 0 chrX 147209140 147209193 -29764947 + CT-rich Low_complexity Low_complexity 4 56 0 1492 185 82 4 chrX 147209203 147209484 -29764656 - AluJo SINE Alu -9 303 1 379 240 240 0 chrX 147210048 147210194 -29763946 + MER5A DNA MER1_type 9 189 0 562 205 5 98 chrX 147210664 147210879 -29763261 + L1 LINE L1 4110 4304 -1842 499 283 50 6 chrX 147211162 147211342 -29762798 - MIR SINE MIR -70 192 5 340 207 58 23 chrX 147211559 147211646 -29762494 - MIR3 SINE MIR -10 198 109 257 189 0 137 chrX 147211800 147211895 -29762245 - L3 LINE CR1 -195 1382 1301 857 336 142 22 chrX 147212729 147213631 -29760509 + L2 LINE L2 1729 2738 -576 742 273 0 6 chrX 147213896 147214072 -29760068 - MER58A DNA MER1_type -49 175 1 21 36 0 0 chrX 147214651 147214679 -29759461 + AT_rich Low_complexity Low_complexity 1 28 0 1739 137 87 36 chrX 147215972 147216329 -29757811 - THE1C LTR MaLR 0 375 1 25 0 0 0 chrX 147216751 147216776 -29757364 + AT_rich Low_complexity Low_complexity 1 25 0 2207 180 87 21 chrX 147218670 147219142 -29754998 + MLT1D LTR MaLR 1 503 -2 303 78 0 0 chrX 147219377 147219428 -29754712 + Alu SINE Alu 252 302 0 2477 132 2 5 chrX 147220981 147221389 -29752751 - L1MA4A LINE L1 -3 6300 5894 6050 79 1 2 chrX 147221389 147222202 -29751938 + L1PA8 LINE L1 5361 6172 0 3271 132 25 38 chrX 147222202 147223029 -29751111 - L1MA4A LINE L1 -395 5908 5086 * 3325 173 44 4 chrX 147223020 147223918 -29750222 + L1 LINE L1 4347 5305 -841 371 319 34 17 chrX 147224432 147224551 -29749589 - MIR SINE MIR -66 142 22 337 308 0 39 chrX 147224829 147224933 -29749207 + MIR3 SINE MIR 82 181 -27 2241 68 4 4 chrX 147225135 147225448 -29748692 + AluY SINE Alu 1 313 0 303 337 12 0 chrX 147226250 147226333 -29747807 + MIR3 SINE MIR 82 165 -43 452 301 17 23 chrX 147227406 147227638 -29746502 + GA-rich Low_complexity Low_complexity 1 230 0 1805 168 7 10 chrX 147227639 147227942 -29746198 + AluJb SINE Alu 2 303 -9 865 304 33 18 chrX 147228853 147229323 -29744817 + MER115 DNA AcHobo 63 579 -114 2125 138 15 6 chrX 147229323 147229664 -29744476 - MER2 DNA MER2_type 0 344 1 865 304 33 18 chrX 147229664 147229780 -29744360 + MER115 DNA AcHobo 579 692 -1 240 111 0 0 chrX 147230215 147230251 -29743889 + (GGAGA)n Simple_repeat Simple_repeat 5 40 0 226 288 88 0 chrX 147230810 147230890 -29743250 - MER91C DNA MER1_type -53 87 1 406 304 52 7 chrX 147231249 147231384 -29742756 + MIR SINE MIR 14 154 -108 183 100 0 0 chrX 147232123 147232153 -29741987 + (TC)n Simple_repeat Simple_repeat 1 30 0 386 342 13 44 chrX 147232344 147232572 -29741568 - L3 LINE CR1 -3 1574 1354 2128 138 47 14 chrX 147232803 147233166 -29740974 + THE1C LTR MaLR 1 375 0 389 264 0 11 chrX 147233300 147233391 -29740749 - L2 LINE L2 0 3313 3224 776 329 172 16 chrX 147233420 147234216 -29739924 + L2 LINE L2 1710 2629 -685 2140 231 48 6 chrX 147234223 147234764 -29739376 - MER90 LTR ERV1 -1 574 11 183 366 0 40 chrX 147234779 147234880 -29739260 + L2 LINE L2 2628 2724 -590 301 274 74 30 chrX 147235996 147236131 -29738009 - L2 LINE L2 -8 3305 3165 359 325 186 13 chrX 147236395 147236632 -29737508 - L2 LINE L2 -1171 2143 1866 242 330 33 11 chrX 147236979 147237070 -29737070 + MIR SINE MIR 23 115 -147 2296 193 42 46 chrX 147237072 147237132 -29737008 - MLT2B3 LTR ERVL 0 554 495 189 0 0 0 chrX 147237132 147237153 -29736987 + (GA)n Simple_repeat Simple_repeat 2 22 0 2296 193 42 46 chrX 147237153 147237636 -29736504 - MLT2B3 LTR ERVL -59 495 13 198 302 0 0 chrX 147237684 147237747 -29736393 + MIR SINE MIR 200 262 0 213 271 71 0 chrX 147237788 147237858 -29736282 + MIR SINE MIR 120 194 -68 264 59 0 0 chrX 147238945 147238979 -29735161 + (TG)n Simple_repeat Simple_repeat 1 34 0 695 146 7 22 chrX 147239008 147239145 -29734995 + Tigger1 DNA MER2_type 23 157 -2261 * 1277 136 19 0 chrX 147239134 147239347 -29734793 + Tigger1 DNA MER2_type 2202 2418 0 242 261 0 15 chrX 147239347 147239412 -29734728 + (TA)n Simple_repeat Simple_repeat 1 64 0 182 311 0 0 chrX 147239706 147239751 -29734389 + MIR SINE MIR 218 262 0 341 321 101 6 chrX 147240438 147240597 -29733543 - MIR SINE MIR -6 256 83 29613 96 5 26 chrX 147242021 147248513 -29725627 + L1PA7 LINE L1 4 6467 -2 198 103 0 0 chrX 147248798 147248827 -29725313 + (CA)n Simple_repeat Simple_repeat 2 30 0 432 154 0 33 chrX 147248843 147248934 -29725206 + HAL1 LINE L1 124 211 -2296 323 67 0 0 chrX 147248933 147248978 -29725162 + L1PA11 LINE L1 5804 5848 -326 * 2810 161 52 2 chrX 147248978 147249493 -29724647 - MER41D LTR ERV1 -16 541 1 343 271 95 53 chrX 147249647 147250053 -29724087 + MLT1L LTR MaLR 149 492 -19 615 157 10 0 chrX 147250232 147250334 -29723806 + U6 snRNA snRNA 5 107 0 1522 182 9 3 chrX 147250334 147250653 -29723487 + L1P LINE L1 1890 2210 -3936 5462 82 40 63 chrX 147250654 147251499 -29722641 - LTR12 LTR ERV1 0 826 1 753 242 35 47 chrX 147251728 147251984 -29722156 - pTR5 LTR ERV1 -1443 995 743 12370 144 11 1 chrX 147251984 147254136 -29720004 + L1P LINE L1 2208 4381 -1765 229 310 31 8 chrX 147254145 147254274 -29719866 + (CATA)n Simple_repeat Simple_repeat 4 135 0 5148 77 34 13 chrX 147254467 147255236 -29718904 + L1PA10 LINE L1 5378 6162 -6 1624 294 59 35 chrX 147255231 147255979 -29718161 + HAL1 LINE L1 202 967 -1540 * 335 296 56 19 chrX 147256420 147256852 -29717288 - L1MCa LINE L1 -2841 3585 3138 949 185 120 7 chrX 147256889 147257273 -29716867 + MLT1D LTR MaLR 21 505 0 229 125 36 0 chrX 147257460 147257516 -29716624 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chrX 147257600 147257628 -29716512 + AT_rich Low_complexity Low_complexity 1 28 0 332 308 85 46 chrX 147257851 147258156 -29715984 - L1MCa LINE L1 -3959 2467 2151 541 286 125 34 chrX 147258323 147258883 -29715257 - HAL1 LINE L1 -742 1765 1155 477 313 108 47 chrX 147258976 147259273 -29714867 - HAL1 LINE L1 -1382 1125 811 828 316 75 29 chrX 147259986 147260061 -29714079 - L2 LINE L2 -2 3311 3241 180 0 0 0 chrX 147260061 147260081 -29714059 + (CAA)n Simple_repeat Simple_repeat 2 21 0 828 316 75 29 chrX 147260081 147260420 -29713720 - L2 LINE L2 -72 3241 2878 461 195 55 73 chrX 147260629 147260793 -29713347 - MER63A DNA MER1_type 0 210 50 465 306 153 14 chrX 147261164 147261386 -29712754 - MIR SINE MIR -4 258 6 733 129 88 67 chrX 147261880 147262073 -29712067 + Charlie5 DNA MER1_type 1 197 -2415 * 928 184 82 0 chrX 147262070 147262326 -29711814 + Charlie5 DNA MER1_type 2348 2624 0 2188 120 0 19 chrX 147262938 147263247 -29710893 + AluSx SINE Alu 1 303 -9 360 276 11 0 chrX 147263329 147263416 -29710724 - L2 LINE L2 -5 3308 3221 2329 109 3 0 chrX 147264319 147264631 -29709509 + AluSp SINE Alu 1 313 0 26 50 0 0 chrX 147264667 147264707 -29709433 + AT_rich Low_complexity Low_complexity 1 40 0 439 271 191 34 chrX 147265065 147265263 -29708877 - L1MC4a LINE L1 -1905 5903 5737 958 21 5 68 chrX 147265263 147265454 -29708686 + (TA)n Simple_repeat Simple_repeat 2 180 0 439 271 191 34 chrX 147265454 147265606 -29708534 - L1MC4a LINE L1 -2071 5737 5498 196 205 0 0 chrX 147265606 147265645 -29708495 + L2 LINE L2 1821 1859 -1455 2316 98 0 0 chrX 147265674 147265969 -29708171 + AluSx SINE Alu 1 295 -17 361 261 172 38 chrX 147266269 147266426 -29707714 + L1MC4a LINE L1 5987 6164 -1644 1603 171 3 35 chrX 147266466 147266752 -29707388 - AluJo SINE Alu -23 289 13 358 266 104 42 chrX 147266884 147267076 -29707064 - L2 LINE L2 -1201 2113 1910 5261 73 0 0 chrX 147267104 147267846 -29706294 - L1P LINE L1 -1154 4992 4251 6161 54 0 0 chrX 147267846 147268605 -29705535 + L1PA8 LINE L1 5393 6154 -18 417 20 0 0 chrX 147268605 147268655 -29705485 + (CATA)n Simple_repeat Simple_repeat 2 51 0 842 149 0 0 chrX 147268996 147269117 -29705023 - FLAM_A SINE Alu -8 125 5 195 42 0 0 chrX 147269121 147269145 -29704995 + (TTA)n Simple_repeat Simple_repeat 1 24 0 385 289 58 0 chrX 147269152 147269256 -29704884 - MIR SINE MIR -7 255 146 * 442 348 13 0 chrX 147269255 147269410 -29704730 + MIR3 SINE MIR 50 206 -2 228 233 0 0 chrX 147269707 147269750 -29704390 + (TG)n Simple_repeat Simple_repeat 1 43 0 202 189 0 0 chrX 147271499 147271536 -29702604 + (CAG)n Simple_repeat Simple_repeat 3 39 0 784 158 61 0 chrX 147273470 147273634 -29700506 + L1MB8 LINE L1 5283 5456 -722 250 105 0 0 chrX 147273727 147273765 -29700375 + L1MB8 LINE L1 5462 5499 -679 785 168 0 0 chrX 147273767 147273886 -29700254 + FLAM_C SINE Alu 2 120 -23 3503 158 28 19 chrX 147273886 147274574 -29699566 + L1MB8 LINE L1 5476 6169 -9 31 44 0 0 chrX 147274792 147274837 -29699303 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 147274868 147274889 -29699251 + AT_rich Low_complexity Low_complexity 1 21 0 587 190 27 4 chrX 147274893 147275139 -29699001 - L1MA9 LINE L1 -40 6272 5937 5798 143 18 5 chrX 147275147 147276716 -29697424 - L1MA1 LINE L1 -101 7620 6029 6611 197 41 16 chrX 147276720 147278135 -29696005 - L1MA1 LINE L1 -6109 1456 6 1259 140 124 18 chrX 147279214 147279521 -29694619 + MSTA LTR MaLR 1 320 -55 786 186 0 8 chrX 147280256 147280385 -29693755 + FLAM_A SINE Alu 1 128 -5 1947 141 133 16 chrX 147280462 147280845 -29693295 - MSTA LTR MaLR 0 428 1 1881 171 9 26 chrX 147280944 147281284 -29692856 + MER1B DNA MER1_type 6 339 0 282 167 118 104 chrX 147283649 147283793 -29690347 + MLT1L LTR MaLR 244 389 -226 415 281 58 0 chrX 147283806 147283927 -29690213 + MLT2B1 LTR ERVL 298 425 -95 263 216 45 41 chrX 147283936 147284045 -29690095 + MLT1L LTR MaLR 386 602 -13 2753 167 8 21 chrX 147284134 147284619 -29689521 + MLT2B1 LTR ERVL 1 479 -41 393 223 0 0 chrX 147284676 147284770 -29689370 + (TA)n Simple_repeat Simple_repeat 1 94 0 276 125 21 0 chrX 147284776 147284824 -29689316 + MLT2C2 LTR ERVL 416 464 0 2061 103 6 41 chrX 147284863 147285203 -29688937 + L1MB3 LINE L1 5855 6182 -1 26 50 0 0 chrX 147285225 147285265 -29688875 + AT_rich Low_complexity Low_complexity 1 40 0 647 282 80 10 chrX 147285319 147285637 -29688503 + L1MC4a LINE L1 5500 5775 -346 669 226 11 75 chrX 147285637 147285823 -29688317 + MER5B DNA MER1_type 4 177 -1 1518 275 168 27 chrX 147285945 147286542 -29687598 + HAL1 LINE L1 3 725 -1782 2090 157 40 5 chrX 147286542 147286919 -29687221 + MLT1B LTR MaLR 1 390 0 1518 275 168 27 chrX 147286919 147287058 -29687082 + HAL1 LINE L1 725 843 -1664 * 2680 31 0 42 chrX 147287055 147287415 -29686725 - L1PA4 LINE L1 -187 5968 5624 1396 36 0 0 chrX 147287415 147287579 -29686561 + L1PA4 LINE L1 5986 6152 -3 356 264 32 0 chrX 147287586 147287711 -29686429 + HAL1 LINE L1 826 954 -1553 877 99 7 7 chrX 147287712 147287854 -29686286 + L1MB7 LINE L1 5835 5976 -208 672 263 112 76 chrX 147287942 147288387 -29685753 + MLT1K LTR MaLR 128 588 0 1843 127 173 24 chrX 147288434 147288618 -29685522 + MSTA LTR MaLR 1 156 -272 252 0 0 0 chrX 147288618 147288646 -29685494 + (TC)n Simple_repeat Simple_repeat 1 28 0 1843 127 173 24 chrX 147288646 147288830 -29685310 + MSTA LTR MaLR 156 424 -4 16547 162 19 26 chrX 147289182 147291873 -29682267 + L1MA1 LINE L1 22 2729 -4992 2399 63 0 0 chrX 147291873 147292158 -29681982 + AluY SINE Alu 27 311 0 16547 162 19 26 chrX 147292158 147297014 -29677126 + L1MA1 LINE L1 2729 7721 0 1251 92 0 0 chrX 147297044 147297217 -29676923 + L1PA8 LINE L1 5998 6170 -2 200 255 39 0 chrX 147297484 147297535 -29676605 + GA-rich Low_complexity Low_complexity 4 56 0 29 28 0 0 chrX 147297973 147298009 -29676131 + AT_rich Low_complexity Low_complexity 1 36 0 2706 81 22 5 chrX 147298078 147298447 -29675693 + THE1C LTR MaLR 1 375 0 367 273 154 69 chrX 147298490 147298750 -29675390 - HAL1 LINE L1 0 2507 2226 1797 154 48 26 chrX 147300030 147300415 -29673725 + LTR49-int LTR ERV1 842 1612 -3268 364 235 0 0 chrX 147300418 147300486 -29673654 + tRNA-Glu-GAG tRNA tRNA 8 75 0 472 114 23 11 chrX 147300540 147300628 -29673512 + MER39-int LTR ERV1 1294 1382 -4949 2199 202 29 2 chrX 147300634 147301049 -29673091 + MSTB LTR MaLR 1 426 0 6051 204 15 49 chrX 147301199 147302711 -29671429 + MER39-int LTR ERV1 1385 2844 -3487 1341 187 4 30 chrX 147302718 147302980 -29671160 - AluJo SINE Alu -8 304 50 671 84 0 19 chrX 147303002 147303109 -29671031 + LTR49-int LTR ERV1 2829 2933 -3398 2115 144 59 4 chrX 147303111 147303506 -29670634 + MSTA LTR MaLR 3 382 -8 2888 157 26 72 chrX 147303506 147304233 -29669907 + MER39-int LTR ERV1 2929 3622 -2709 856 133 0 0 chrX 147304244 147304364 -29669776 + FLAM_C SINE Alu 1 120 -23 346 189 91 38 chrX 147304377 147304509 -29669631 + MER39-int LTR ERV1 2978 3116 -3642 3045 131 51 47 chrX 147304518 147305199 -29668941 + MER39-int LTR ERV1 3712 4395 -1936 1288 170 56 50 chrX 147305250 147305608 -29668532 + MER39-int LTR ERV1 4567 4926 -1405 4010 142 64 19 chrX 147305609 147306510 -29667630 + MER39-int LTR ERV1 3712 4694 -242 1944 19 0 0 chrX 147306526 147306740 -29667400 + AluY SINE Alu 98 311 0 803 87 17 9 chrX 147306746 147306861 -29667279 + AluY SINE Alu 29 144 -167 2564 46 0 0 chrX 147306861 147307166 -29666974 + AluY SINE Alu 1 305 -6 367 206 14 0 chrX 147307204 147307277 -29666863 + MER39-int LTR ERV1 6080 6153 -178 384 191 83 0 chrX 147307390 147307474 -29666666 + MER39 LTR ERV1 1 91 -616 244 195 0 0 chrX 147307576 147307617 -29666523 - Alu SINE Alu -121 181 141 1930 164 3 0 chrX 147308365 147308676 -29665464 - AluJb SINE Alu 0 312 1 40 49 0 0 chrX 147308865 147308926 -29665214 + AT_rich Low_complexity Low_complexity 1 61 0 3944 130 6 13 chrX 147308974 147309653 -29664487 - L1MA2 LINE L1 0 6304 5631 225 0 0 0 chrX 147309684 147309709 -29664431 + (A)n Simple_repeat Simple_repeat 1 25 0 14460 144 28 16 chrX 147309716 147310686 -29663454 - L1 LINE L1 -3404 4161 3205 2397 55 0 36 chrX 147310686 147310993 -29663147 - AluY SINE Alu -14 297 2 14460 144 28 16 chrX 147310993 147313041 -29661099 - L1 LINE L1 -4360 3205 1105 401 211 41 24 chrX 147313035 147313158 -29660982 - L1 LINE L1 -7428 137 13 * 639 243 79 21 chrX 147313403 147313774 -29660366 + L1ME LINE L1 5191 5588 -574 393 228 82 35 chrX 147313877 147314048 -29660092 - L1MEd LINE L1 -5883 236 58 303 326 46 50 chrX 147314067 147314484 -29659656 - L1 LINE L1 -2652 3494 3080 536 254 41 89 chrX 147314875 147315166 -29658974 - MLT1J LTR MaLR 0 511 235 362 199 44 147 chrX 147315821 147315911 -29658229 + L1ME1 LINE L1 4912 5010 -1136 1793 152 3 74 chrX 147315911 147316247 -29657893 + AluJb SINE Alu 1 312 0 362 199 44 147 chrX 147316247 147316428 -29657712 + L1ME1 LINE L1 5010 5155 -991 1783 249 78 21 chrX 147316442 147317201 -29656939 + L1ME1 LINE L1 5297 6163 -3 570 174 10 0 chrX 147318187 147318285 -29655855 + FLAM_A SINE Alu 23 121 -21 25 0 0 0 chrX 147318288 147318313 -29655827 + AT_rich Low_complexity Low_complexity 1 25 0 1741 188 0 7 chrX 147318742 147319050 -29655090 - AluJb SINE Alu -6 306 1 451 177 21 55 chrX 147319084 147319211 -29654929 - L1MC3 LINE L1 -6 7771 6205 4890 122 60 20 chrX 147319211 147320005 -29654135 - LTR12 LTR ERV1 0 826 1 668 225 7 48 chrX 147320191 147320462 -29653678 - pTR5 LTR ERV1 -1410 1028 769 842 222 5 5 chrX 147320465 147320677 -29653463 - L1MD3 LINE L1 -103 7892 7681 1212 176 5 18 chrX 147320704 147320926 -29653214 - AluJb SINE Alu -7 305 87 375 231 0 0 chrX 147321325 147321403 -29652737 + MLT1J LTR MaLR 103 180 -331 186 43 0 0 chrX 147321660 147321683 -29652457 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 692 219 27 0 chrX 147322242 147322388 -29651752 - MIR SINE MIR -23 239 90 3460 104 63 5 chrX 147322457 147323016 -29651124 - LTR59 LTR ERV1 -6 591 1 1500 167 16 71 chrX 147323121 147323432 -29650708 - AluJo SINE Alu -2 310 17 1441 119 5 5 chrX 147323782 147323984 -29650156 + AluJb SINE Alu 1 202 -110 5130 203 51 27 chrX 147324507 147325796 -29648344 + L1MC2 LINE L1 1 1257 -5307 2157 178 13 0 chrX 147325796 147326194 -29647946 + MER57A LTR ERV1 1 403 0 5130 203 51 27 chrX 147326194 147327778 -29646362 + L1MC2 LINE L1 1257 2801 -3763 258 32 0 0 chrX 147327778 147327809 -29646331 + (TG)n Simple_repeat Simple_repeat 2 32 0 1814 133 4 18 chrX 147327810 147328089 -29646051 - AluSx SINE Alu -37 275 1 5130 203 51 27 chrX 147328089 147328454 -29645686 + L1MC2 LINE L1 2800 3427 -3137 * 5159 193 49 9 chrX 147328448 147328892 -29645248 + L1MC2 LINE L1 4750 5175 -1587 1095 185 85 79 chrX 147328892 147329144 -29644996 + MER2 DNA MER2_type 3 259 -85 1937 144 0 3 chrX 147329144 147329435 -29644705 - AluSg SINE Alu -20 290 1 1095 185 85 79 chrX 147329435 147329522 -29644618 + MER2 DNA MER2_type 259 344 0 5159 193 49 9 chrX 147329522 147331018 -29643122 + L1MC2 LINE L1 5175 6753 -9 203 298 69 38 chrX 147331062 147331193 -29642947 - L2 LINE L2 -213 3059 2925 641 226 8 15 chrX 147331369 147331502 -29642638 - L2 LINE L2 0 3313 3182 768 208 11 12 chrX 147331521 147331745 -29642395 + L1M4 LINE L1 4855 5072 -1074 1085 258 111 41 chrX 147331761 147332246 -29641894 - L2 LINE L2 -436 2878 2360 213 216 0 0 chrX 147332562 147332599 -29641541 - L2 LINE L2 -16 3256 3220 343 235 21 123 chrX 147333697 147333884 -29640256 + L2 LINE L2 3120 3287 -26 348 83 0 0 chrX 147334459 147334507 -29639633 + (CAAAC)n Simple_repeat Simple_repeat 3 50 0 277 56 0 56 chrX 147334921 147334975 -29639165 + (CGG)n Simple_repeat Simple_repeat 2 52 0 286 247 242 53 chrX 147338568 147338758 -29635382 - MIR SINE MIR 0 262 37 518 137 0 54 chrX 147339426 147339594 -29634546 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1632 161 55 0 chrX 147339596 147339887 -29634253 - AluSg SINE Alu -3 307 1 417 241 109 29 chrX 147340606 147340780 -29633360 - MIR SINE MIR -73 189 2 216 0 0 0 chrX 147341420 147341444 -29632696 + (T)n Simple_repeat Simple_repeat 1 24 0 309 279 142 46 chrX 147341444 147341641 -29632499 - MARNA DNA Mariner -200 386 171 607 251 72 6 chrX 147341645 147341812 -29632328 + MER3 DNA MER1_type 32 209 0 196 358 15 0 chrX 147342832 147342899 -29631241 - L2 LINE L2 -9 3304 3237 944 193 5 24 chrX 147342965 147343178 -29630962 - L1M4 LINE L1 -1076 5070 4862 276 333 106 17 chrX 147343586 147343766 -29630374 - L2 LINE L2 -168 3104 2909 202 234 0 0 chrX 147344317 147344364 -29629776 + (TA)n Simple_repeat Simple_repeat 2 48 0 801 180 57 28 chrX 147345665 147345876 -29628264 + L1MB8 LINE L1 5943 6159 -19 279 0 0 0 chrX 147347339 147347370 -29626770 + (TG)n Simple_repeat Simple_repeat 2 32 0 25 40 0 20 chrX 147347371 147347383 -29626757 + AT_rich Low_complexity Low_complexity 1 12 -37 1629 172 13 40 chrX 147347383 147347686 -29626454 - AluJo SINE Alu -13 299 5 25 40 0 20 chrX 147347686 147347723 -29626417 + AT_rich Low_complexity Low_complexity 12 49 0 2169 92 14 0 chrX 147349353 147349658 -29624482 - AluSq SINE Alu 0 309 1 3654 30 0 0 chrX 147399665 147400096 -29574044 - L1P LINE L1 -4255 1891 1461 283 327 30 20 chrX 147401658 147401759 -29572381 + MIR SINE MIR 37 138 -70 195 42 0 0 chrX 147402497 147402521 -29571619 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 6621 43 0 0 chrX 147402522 147403317 -29570823 - L1PA5 LINE L1 -6 6148 5354 23 54 0 0 chrX 147403624 147403661 -29570479 + AT_rich Low_complexity Low_complexity 1 37 0 257 154 46 0 chrX 147404658 147404723 -29569417 - L1MA8 LINE L1 -4 6287 6220 257 200 0 0 chrX 147407527 147407577 -29566563 + MIR SINE MIR 212 261 -1 753 261 11 56 chrX 147407751 147408019 -29566121 - MIR SINE MIR -4 258 3 601 242 33 44 chrX 147408746 147408928 -29565212 - MIR SINE MIR -49 213 34 312 292 0 56 chrX 147408944 147409033 -29565107 + L2 LINE L2 3189 3272 0 317 346 25 59 chrX 147409110 147409312 -29564828 - MIR SINE MIR -49 213 19 23 54 0 0 chrX 147409332 147409369 -29564771 + AT_rich Low_complexity Low_complexity 1 37 0 552 339 73 46 chrX 147410096 147410532 -29563608 + L2 LINE L2 2825 3272 0 1484 222 99 56 chrX 147411039 147411602 -29562538 + MLT1E1 LTR MaLR 7 654 0 327 326 105 17 chrX 147411611 147411792 -29562348 + MIR SINE MIR 41 237 -25 914 292 112 22 chrX 147411836 147412509 -29561631 - L2 LINE L2 -12 3301 2572 355 256 98 15 chrX 147414321 147414454 -29559686 + L2 LINE L2 3168 3311 -2 245 313 20 68 chrX 147414793 147414940 -29559200 - L2 LINE L2 -467 2847 2708 573 301 21 0 chrX 147415347 147415490 -29558650 + MIR SINE MIR 47 192 -70 293 347 16 25 chrX 147415540 147415661 -29558479 - MER5A DNA MER1_type -6 183 64 280 137 39 0 chrX 147415670 147415721 -29558419 - L1MB2 LINE L1 -6 6165 6113 1566 138 15 4 chrX 147415722 147415990 -29558150 - L1MA4 LINE L1 -5 6295 6025 225 0 0 0 chrX 147416536 147416561 -29557579 + (A)n Simple_repeat Simple_repeat 1 25 0 782 334 17 60 chrX 147417721 147418188 -29555952 - L3 LINE CR1 -65 1512 1066 388 354 39 0 chrX 147418212 147418342 -29555798 - L2 LINE L2 -4 3268 3134 1035 239 59 8 chrX 147418378 147418617 -29555523 - MLT1E LTR MaLR -2 591 341 539 227 141 49 chrX 147418633 147418818 -29555322 - MLT1E LTR MaLR -358 235 34 215 273 0 0 chrX 147419299 147419343 -29554797 - L2 LINE L2 -258 3055 3012 228 254 0 0 chrX 147419375 147419434 -29554706 + A-rich Low_complexity Low_complexity 1 59 0 299 231 0 0 chrX 147420080 147420145 -29553995 - 7SK RNA RNA -89 104 40 199 254 16 63 chrX 147420744 147420807 -29553333 - MIR3 SINE MIR -41 167 108 275 298 58 29 chrX 147421555 147421659 -29552481 - MIR SINE MIR -144 118 12 289 395 30 0 chrX 147422521 147422655 -29551485 + MIR3 SINE MIR 13 150 -58 3286 152 33 5 chrX 147423914 147424004 -29550136 + L1MA9 LINE L1 5694 5780 -532 288 0 0 0 chrX 147424004 147424036 -29550104 + (TA)n Simple_repeat Simple_repeat 1 32 0 204 40 0 0 chrX 147424035 147424060 -29550080 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 3286 152 33 5 chrX 147424036 147424567 -29549573 + L1MA9 LINE L1 5780 6308 -4 592 237 21 34 chrX 147424644 147424880 -29549260 - Charlie5 DNA MER1_type -27 2585 2353 4452 101 27 25 chrX 147424881 147425267 -29548873 - L1PA11 LINE L1 -3 6171 5781 207 100 0 0 chrX 147425267 147425297 -29548843 + (TA)n Simple_repeat Simple_repeat 1 30 0 4452 101 27 25 chrX 147425297 147425604 -29548536 - L1PA11 LINE L1 -393 5781 5476 6341 58 0 0 chrX 147425608 147426395 -29547745 - L1PA7 LINE L1 -13 6141 5355 * 9944 78 10 1 chrX 147426392 147427744 -29546396 + L1PA7 LINE L1 3987 5350 -796 3477 118 15 10 chrX 147427740 147428452 -29545688 - L1PA11 LINE L1 -686 5488 4780 * 906 144 56 0 chrX 147428458 147428618 -29545522 - Charlie5 DNA MER1_type -210 2402 2234 392 179 170 0 chrX 147428618 147428724 -29545416 - Charlie5 DNA MER1_type -2488 124 1 195 320 0 0 chrX 147429000 147429050 -29545090 + L2 LINE L2 3262 3311 -2 892 198 17 0 chrX 147429548 147429720 -29544420 + L1MB5 LINE L1 5450 5624 -550 3117 164 2 22 chrX 147429764 147430355 -29543785 + L1MB5 LINE L1 5596 6174 0 396 0 0 0 chrX 147431055 147431099 -29543041 + (TG)n Simple_repeat Simple_repeat 1 44 0 29 60 0 0 chrX 147432020 147432070 -29542070 + AT_rich Low_complexity Low_complexity 1 50 0 296 271 49 81 chrX 147434192 147434383 -29539757 + MIR SINE MIR 11 198 -64 313 65 0 0 chrX 147434714 147434760 -29539380 - MADE1 DNA Mariner -34 46 1 197 382 13 0 chrX 147435029 147435105 -29539035 - MIR SINE MIR 0 262 186 2635 97 0 3 chrX 147435105 147435476 -29538664 - L1PB1 LINE L1 0 6151 5782 523 204 0 13 chrX 147435488 147435640 -29538500 + (TA)n Simple_repeat Simple_repeat 1 150 0 3533 88 0 0 chrX 147435640 147436150 -29537990 - L1PB1 LINE L1 -360 5791 5282 490 229 0 53 chrX 147436171 147436302 -29537838 - MIR SINE MIR -61 201 78 318 277 0 43 chrX 147437030 147437124 -29537016 + L1MC4 LINE L1 6614 6703 -1339 40796 33 23 0 chrX 147437758 147443768 -29530372 + L1PA3 LINE L1 2 6155 0 297 0 0 0 chrX 147446162 147446195 -29527945 + (TG)n Simple_repeat Simple_repeat 2 34 0 230 348 11 0 chrX 147446415 147446507 -29527633 - MIR SINE MIR -14 248 156 200 274 0 0 chrX 147446530 147446581 -29527559 + (CA)n Simple_repeat Simple_repeat 2 52 0 1955 164 37 42 chrX 147446752 147447180 -29526960 - L1M1 LINE L1 -7127 438 13 4952 222 39 25 chrX 147447182 147448724 -29525416 - L1 LINE L1 -3105 4103 2809 1858 182 0 19 chrX 147448724 147449032 -29525108 - AluJb SINE Alu -10 302 1 4952 222 39 25 chrX 147449032 147450128 -29524012 - L1 LINE L1 -4399 2809 1729 1576 288 81 23 chrX 147450247 147450928 -29523212 - L1 LINE L1 -6152 1057 168 360 138 0 0 chrX 147450981 147451046 -29523094 + (TTCCC)n Simple_repeat Simple_repeat 4 68 0 448 165 28 0 chrX 147451049 147451158 -29522982 + CT-rich Low_complexity Low_complexity 1 112 0 367 241 204 58 chrX 147451158 147451295 -29522845 - FRAM SINE Alu -10 156 1 269 153 14 0 chrX 147452136 147452208 -29521932 + T-rich Low_complexity Low_complexity 3 75 0 457 280 159 6 chrX 147452384 147452541 -29521599 - MER5A DNA MER1_type 0 189 9 251 170 117 53 chrX 147453654 147453748 -29520392 + MIR SINE MIR 163 262 0 365 175 63 103 chrX 147453796 147453922 -29520218 + MIR SINE MIR 132 252 -10 397 317 14 19 chrX 147454104 147454279 -29519861 + MER5A DNA MER1_type 2 189 0 347 340 35 10 chrX 147454394 147454591 -29519549 + L3b LINE CR1 1134 1335 -248 318 282 27 0 chrX 147454680 147454790 -29519350 - MIR SINE MIR -10 252 140 197 267 181 17 chrX 147455382 147455498 -29518642 + L2 LINE L2 2281 2415 -899 2400 84 0 0 chrX 147455825 147456124 -29518016 + AluSc SINE Alu 3 301 -8 959 251 5 9 chrX 147456287 147456498 -29517642 + MER63A DNA MER1_type 1 210 0 346 187 33 22 chrX 147457441 147457532 -29516608 + L1MD2 LINE L1 5160 5251 -895 255 239 23 11 chrX 147457605 147457693 -29516447 - L1MC4a LINE L1 -85 7723 7635 3855 200 63 38 chrX 147457696 147458753 -29515387 + L1MD2 LINE L1 5263 6346 -13 402 312 137 0 chrX 147458829 147459063 -29515077 + L1ME4a LINE L1 5574 5839 -282 2204 104 3 0 chrX 147459067 147459356 -29514784 + AluSp SINE Alu 7 296 -17 21 57 0 0 chrX 147459493 147459528 -29514612 + AT_rich Low_complexity Low_complexity 1 35 0 236 211 89 11 chrX 147459534 147459624 -29514516 + L1ME4a LINE L1 6008 6104 -17 310 224 20 51 chrX 147459630 147459728 -29514412 - L1MC4 LINE L1 -1334 6708 6614 194 147 59 0 chrX 147459761 147459829 -29514311 + (TA)n Simple_repeat Simple_repeat 1 72 0 375 230 0 0 chrX 147459893 147459967 -29514173 - MER5A DNA MER1_type -87 102 29 516 270 29 0 chrX 147460389 147460526 -29513614 - MIR SINE MIR 0 262 122 388 286 63 8 chrX 147460529 147460655 -29513485 - MIR SINE MIR -74 188 56 225 175 0 0 chrX 147460921 147460961 -29513179 + (TG)n Simple_repeat Simple_repeat 1 40 0 32 0 0 23 chrX 147461021 147461044 -29513096 + AT_rich Low_complexity Low_complexity 1 24 -18 1983 146 3 0 chrX 147461044 147461332 -29512808 - AluSx SINE Alu -23 289 1 32 0 0 23 chrX 147461332 147461351 -29512789 + AT_rich Low_complexity Low_complexity 24 42 0 249 209 0 15 chrX 147461358 147461425 -29512715 + L1ME4a LINE L1 6054 6119 -2 2406 100 132 5 chrX 147461675 147462055 -29512085 - MSTA LTR MaLR 0 428 1 1867 166 24 46 chrX 147462287 147462698 -29511442 - L1MD2 LINE L1 -1 6358 5957 2496 166 99 16 chrX 147462706 147463280 -29510860 + L1MD2 LINE L1 5320 5941 -418 291 286 101 53 chrX 147463465 147463654 -29510486 - MIR3 SINE MIR -9 199 2 198 191 0 0 chrX 147463827 147463874 -29510266 + (ATG)n Simple_repeat Simple_repeat 1 47 0 511 206 59 0 chrX 147463879 147463981 -29510159 - MIR SINE MIR 0 262 155 480 284 62 17 chrX 147464296 147464472 -29509668 + MIR SINE MIR 35 218 -44 180 0 0 0 chrX 147464645 147464665 -29509475 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 1130 155 10 0 chrX 147464667 147464861 -29509279 - L1PA15 LINE L1 -21 6144 5949 1782 147 43 43 chrX 147464861 147465236 -29508904 - THE1C LTR MaLR 0 375 1 9836 120 4 34 chrX 147465236 147466866 -29507274 - THE1C-int LTR MaLR 0 1580 1 2008 128 37 37 chrX 147466866 147467241 -29506899 - THE1C LTR MaLR 0 375 1 1461 124 18 4 chrX 147467241 147467518 -29506622 - L1PA15 LINE L1 -215 5953 5540 804 169 20 0 chrX 147467517 147467665 -29506475 + L1P LINE L1 4008 4158 -1988 * 303 360 35 0 chrX 147468030 147468144 -29505996 - L2 LINE L2 -4 3309 3192 405 335 123 22 chrX 147468894 147469489 -29504651 + L2 LINE L2 1624 2278 -1036 470 293 69 77 chrX 147469490 147469869 -29504271 - MLT1I LTR MaLR 0 409 34 193 258 16 16 chrX 147469899 147469961 -29504179 + L2 LINE L2 2283 2344 -970 493 321 42 81 chrX 147469961 147470460 -29503680 + L2 LINE L2 2583 3063 -209 22 35 0 0 chrX 147470578 147470607 -29503533 + AT_rich Low_complexity Low_complexity 1 29 0 835 143 0 8 chrX 147470972 147471105 -29503035 + FLAM_C SINE Alu 2 133 0 264 196 0 0 chrX 147471291 147471337 -29502803 + L2 LINE L2 3268 3313 0 543 239 60 69 chrX 147471932 147471980 -29502160 - MIR SINE MIR 0 262 215 1080 182 25 0 chrX 147471980 147472183 -29501957 - MER3 DNA MER1_type 0 209 2 543 239 60 69 chrX 147472183 147472352 -29501788 - MIR SINE MIR -47 215 47 1030 320 31 44 chrX 147472478 147472847 -29501293 + L1PA13 LINE L1 788 1147 -6427 2678 107 5 0 chrX 147472847 147473220 -29500920 + THE1C LTR MaLR 1 375 0 1030 320 31 44 chrX 147473220 147473468 -29500672 + L1PA13 LINE L1 1147 1397 -6177 301 333 0 0 chrX 147473589 147473688 -29500452 + L1PA13 LINE L1 2084 2182 -5399 420 20 0 0 chrX 147473820 147473869 -29500271 + (CA)n Simple_repeat Simple_repeat 2 50 0 314 335 54 0 chrX 147473956 147474141 -29499999 + L1PA13 LINE L1 2182 2376 -5205 * 562 226 7 0 chrX 147474132 147474269 -29499871 + L1 LINE L1 4744 4881 -1265 4798 146 47 6 chrX 147474289 147475425 -29498715 + L1PA16 LINE L1 4999 6166 0 28 61 0 0 chrX 147475479 147475528 -29498612 + AT_rich Low_complexity Low_complexity 1 49 0 602 256 101 6 chrX 147475536 147475704 -29498436 + MIR SINE MIR 34 217 -45 189 306 0 65 chrX 147476086 147476210 -29497930 + L2 LINE L2 2821 2936 -336 396 71 0 0 chrX 147476210 147476266 -29497874 + (CA)n Simple_repeat Simple_repeat 1 56 0 3060 168 10 2 chrX 147476436 147476948 -29497192 - MLT2B1 LTR ERVL -2 518 3 2061 83 4 0 chrX 147476948 147477226 -29496914 + L1PA7 LINE L1 5870 6148 -6 1847 90 4 4 chrX 147478214 147478459 -29495681 + AluSc SINE Alu 1 245 -64 533 262 142 7 chrX 147478597 147478965 -29495175 - L1ME3A LINE L1 -220 5950 5532 1552 263 31 50 chrX 147478993 147479636 -29494504 - L1M4 LINE L1 -5896 646 16 1670 278 33 12 chrX 147479685 147479839 -29494301 - L1ME3A LINE L1 -2203 3943 3794 1651 174 113 22 chrX 147479839 147480202 -29493938 + MSTD LTR MaLR 1 396 0 1670 278 33 12 chrX 147480202 147480692 -29493448 - L1ME3A LINE L1 -2352 3794 3286 259 203 27 0 chrX 147481717 147481791 -29492349 + (TA)n Simple_repeat Simple_repeat 1 76 0 2825 66 32 0 chrX 147483068 147483491 -29490649 + L1P3 LINE L1 5213 5647 -507 186 43 0 0 chrX 147483734 147483757 -29490383 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 692 219 27 0 chrX 147484316 147484462 -29489678 - MIR SINE MIR -23 239 90 3656 104 63 5 chrX 147484531 147485090 -29489050 - LTR59 LTR ERV1 -6 591 1 1467 167 16 71 chrX 147485195 147485506 -29488634 - AluJo SINE Alu -2 310 17 233 244 77 0 chrX 147485778 147485856 -29488284 - MLT1J LTR MaLR -22 489 406 1431 119 5 5 chrX 147485856 147486058 -29488082 + AluJb SINE Alu 1 202 -110 5514 223 39 34 chrX 147486581 147487870 -29486270 + L1MC2 LINE L1 1 1282 -5282 2180 178 13 0 chrX 147487870 147488268 -29485872 + MER57A LTR ERV1 1 403 0 5514 223 39 34 chrX 147488268 147489853 -29484287 + L1MC2 LINE L1 1282 2857 -3707 312 27 0 0 chrX 147489853 147489890 -29484250 + (TG)n Simple_repeat Simple_repeat 2 38 0 1802 133 4 18 chrX 147489891 147490170 -29483970 - AluSx SINE Alu -37 275 1 5514 223 39 34 chrX 147490170 147490535 -29483605 + L1MC2 LINE L1 2856 3427 -3137 5497 193 49 9 chrX 147490529 147490973 -29483167 + L1MC2 LINE L1 4750 5175 -1587 * 1118 185 85 79 chrX 147490973 147491225 -29482915 + MER2 DNA MER2_type 3 259 -85 1924 144 0 3 chrX 147491225 147491516 -29482624 - AluSg SINE Alu -20 290 1 1118 185 85 79 chrX 147491516 147491603 -29482537 + MER2 DNA MER2_type 259 344 0 5497 193 49 9 chrX 147491603 147493099 -29481041 + L1MC2 LINE L1 5175 6753 -9 194 298 69 38 chrX 147493143 147493274 -29480866 - L2 LINE L2 -213 3059 2925 640 226 8 15 chrX 147493450 147493583 -29480557 - L2 LINE L2 0 3313 3182 821 208 11 12 chrX 147493602 147493826 -29480314 + L1M4 LINE L1 4855 5072 -1074 1054 258 111 41 chrX 147493842 147494327 -29479813 - L2 LINE L2 -436 2878 2360 212 216 0 0 chrX 147494643 147494680 -29479460 - L2 LINE L2 -16 3256 3220 339 235 21 123 chrX 147495778 147495965 -29478175 + L2 LINE L2 3120 3287 -26 348 83 0 0 chrX 147496540 147496588 -29477552 + (CAAAC)n Simple_repeat Simple_repeat 3 50 0 357 266 103 117 chrX 147496756 147497270 -29476870 - L1M2 LINE L1 -5940 909 403 287 247 242 53 chrX 147500728 147500918 -29473222 - MIR SINE MIR 0 262 37 518 137 0 54 chrX 147501586 147501754 -29472386 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 1661 161 55 0 chrX 147501756 147502047 -29472093 - AluSg SINE Alu -3 307 1 424 241 109 29 chrX 147502766 147502940 -29471200 - MIR SINE MIR -73 189 2 295 279 142 46 chrX 147503597 147503794 -29470346 - MARNA DNA Mariner -200 386 171 602 251 72 6 chrX 147503798 147503965 -29470175 + MER3 DNA MER1_type 32 209 0 196 358 15 0 chrX 147504985 147505052 -29469088 - L2 LINE L2 -9 3304 3237 934 193 5 24 chrX 147505118 147505331 -29468809 - L1M4 LINE L1 -1076 5070 4862 282 301 81 0 chrX 147505796 147505919 -29468221 - L2 LINE L2 -231 3041 2909 202 234 0 0 chrX 147506469 147506516 -29467624 + (TA)n Simple_repeat Simple_repeat 2 48 0 794 180 57 28 chrX 147507817 147508028 -29466112 + L1MB8 LINE L1 5943 6159 -19 297 0 0 0 chrX 147509491 147509524 -29464616 + (TG)n Simple_repeat Simple_repeat 2 34 0 27 39 0 19 chrX 147509525 147509539 -29464601 + AT_rich Low_complexity Low_complexity 1 14 -37 1630 173 13 40 chrX 147509539 147509839 -29464301 - AluJo SINE Alu -16 296 5 27 39 0 19 chrX 147509839 147509876 -29464264 + AT_rich Low_complexity Low_complexity 14 51 0 2203 92 14 0 chrX 147511506 147511811 -29462329 - AluSq SINE Alu 0 309 1 279 247 264 22 chrX 147511831 147512013 -29462127 - L2 LINE L2 -49 3264 3039 213 337 82 31 chrX 147512163 147512261 -29461879 + L2 LINE L2 3127 3229 -43 788 66 0 0 chrX 147514504 147514610 -29459530 + L1MA1 LINE L1 6197 6302 0 21 0 0 0 chrX 147514947 147514968 -29459172 + AT_rich Low_complexity Low_complexity 1 21 0 1789 23 28 0 chrX 147517927 147518143 -29455997 - L1PA3 LINE L1 -1 6154 5933 21 36 0 0 chrX 147518296 147518324 -29455816 + AT_rich Low_complexity Low_complexity 1 28 0 415 333 47 6 chrX 147519308 147519479 -29454661 + MIR SINE MIR 12 189 -73 22 0 0 0 chrX 147521925 147521947 -29452193 + AT_rich Low_complexity Low_complexity 1 22 0 281 325 120 38 chrX 147523309 147523726 -29450414 + L2 LINE L2 2747 3219 -94 1822 163 0 19 chrX 147524639 147524946 -29449194 + AluJb SINE Alu 1 301 -11 2300 37 0 0 chrX 147524946 147525215 -29448925 + AluYa5 SINE Alu 43 311 0 182 267 67 0 chrX 147525478 147525523 -29448617 - L2 LINE L2 -11 3261 3214 246 184 0 41 chrX 147526307 147526356 -29447784 + MIR SINE MIR 76 122 -86 213 159 0 0 chrX 147530025 147530069 -29444071 + GA-rich Low_complexity Low_complexity 1 44 0 2302 101 3 3 chrX 147530894 147531201 -29442939 - AluSq SINE Alu -6 307 1 509 279 85 20 chrX 147531540 147531741 -29442399 - MIR SINE MIR -36 226 13 2327 87 3 3 chrX 147532155 147532453 -29441687 + AluSq SINE Alu 1 298 -15 2452 61 7 0 chrX 147532454 147532750 -29441390 + AluY SINE Alu 1 298 -13 21 0 0 0 chrX 147537196 147537217 -29436923 + AT_rich Low_complexity Low_complexity 1 21 0 2048 132 13 10 chrX 147537791 147538102 -29436038 - AluSx SINE Alu 0 312 1 1438 186 41 11 chrX 147539920 147540240 -29433900 + MER33 DNA MER1_type 1 319 -5 306 326 6 13 chrX 147540650 147540809 -29433331 + HERVL LTR ERVL 1703 3090 -2564 2009 199 269 14 chrX 147541062 147541694 -29432446 - LTR50 LTR ERVL 0 795 3 251 254 55 99 chrX 147542507 147542712 -29431428 + HERVL LTR ERVL 4491 4727 -984 2247 221 19 40 chrX 147542723 147543197 -29430943 - LTR16B LTR ERVL 0 464 1 901 167 8 0 chrX 147543219 147543351 -29430789 - FLAM_C SINE Alu 0 133 1 288 304 124 41 chrX 147544895 147545177 -29428963 - L2 LINE L2 0 3313 2358 2352 201 17 11 chrX 147545227 147545690 -29428450 + L1MC4 LINE L1 7393 7858 -184 781 279 28 35 chrX 147545722 147545976 -29428164 + MIR SINE MIR 7 258 -4 216 346 63 75 chrX 147545982 147546236 -29427904 - L2 LINE L2 -34 3238 2988 540 249 184 20 chrX 147546399 147546600 -29427540 + MIR SINE MIR 14 247 -15 700 258 74 88 chrX 147546643 147546996 -29427144 + MLT1I LTR MaLR 20 367 -42 264 328 164 18 chrX 147547399 147547758 -29426382 - L2 LINE L2 -232 3040 2637 286 167 0 50 chrX 147547797 147547837 -29426303 - MLT2C1 LTR ERVL 0 520 482 189 0 0 0 chrX 147547837 147547858 -29426282 + (TG)n Simple_repeat Simple_repeat 2 22 0 286 167 0 50 chrX 147547858 147547877 -29426263 - MLT2C1 LTR ERVL -38 482 464 294 94 28 57 chrX 147547877 147547983 -29426157 + (TA)n Simple_repeat Simple_repeat 2 104 0 1031 221 58 8 chrX 147547983 147548213 -29425927 - MLT2C1 LTR ERVL -43 477 119 1518 212 3 9 chrX 147548214 147548559 -29425581 + L1P LINE L1 4951 5293 -853 319 91 109 0 chrX 147548534 147548589 -29425551 + L1PA13 LINE L1 6099 6159 -4 * 2828 6 0 28 chrX 147548598 147548917 -29425223 + AluYb8 SINE Alu 1 310 -8 674 150 50 0 chrX 147548918 147549038 -29425102 - MLT2C1 LTR ERVL -271 126 1 799 302 98 30 chrX 147549043 147549510 -29424630 - L2 LINE L2 -781 2533 2035 397 275 23 130 chrX 147550039 147550301 -29423839 + L2 LINE L2 2962 3195 -77 297 365 16 0 chrX 147550562 147550688 -29423452 - L2 LINE L2 -6 3307 3180 275 299 25 76 chrX 147551386 147551583 -29422557 + LTR67 LTR ERVL 92 278 -279 5688 108 19 6 chrX 147551652 147552483 -29421657 + L1PA16 LINE L1 5325 6166 0 1880 150 34 21 chrX 147552509 147552890 -29421250 + L1MA4 LINE L1 4457 4842 -1304 * 37559 67 4 8 chrX 147552873 147558606 -29415534 + L1PA6 LINE L1 438 6150 -4 4118 172 19 36 chrX 147558593 147559126 -29415014 + L1MA4 LINE L1 4801 5342 -829 * 2398 73 7 0 chrX 147559126 147559426 -29414714 + AluSp SINE Alu 1 302 -11 4118 172 19 36 chrX 147559426 147560228 -29413912 + L1MA4 LINE L1 5342 6168 -3 29 0 0 0 chrX 147560282 147560311 -29413829 + AT_rich Low_complexity Low_complexity 1 29 0 2546 227 55 19 chrX 147560393 147561013 -29413127 - MER97b DNA MER1_type? -411 642 1 259 226 38 90 chrX 147561060 147561193 -29412947 + LTR67 LTR ERVL 432 557 0 640 268 161 8 chrX 147561410 147561671 -29412469 - MLT1L LTR MaLR 0 615 315 2577 294 66 53 chrX 147561689 147563011 -29411129 + ERVL LTR ERVL 3724 5062 -702 704 269 111 36 chrX 147563023 147563223 -29410917 - L1ME LINE L1 -366 5796 5613 2118 104 7 10 chrX 147563223 147563520 -29410620 + AluSx SINE Alu 1 296 -16 704 269 111 36 chrX 147563520 147563692 -29410448 - L1ME LINE L1 -549 5613 5381 193 261 22 33 chrX 147564154 147564246 -29409894 - MIR3 SINE MIR -8 200 110 269 192 82 14 chrX 147564378 147564451 -29409689 + LTR40b LTR ERVL 1 78 -384 * 666 188 8 0 chrX 147564437 147564554 -29409586 + LTR40a LTR ERVL 402 519 0 367 366 30 0 chrX 147565037 147565171 -29408969 - MIR3 SINE MIR -18 190 53 2319 97 7 0 chrX 147565407 147565717 -29408423 + AluSx SINE Alu 1 312 0 784 185 0 43 chrX 147565732 147565894 -29408246 + MER3 DNA MER1_type 41 195 -14 214 265 59 15 chrX 147566054 147566122 -29408018 - L2 LINE L2 -1 3271 3201 240 35 0 0 chrX 147566739 147566768 -29407372 + (AGGGGG)n Simple_repeat Simple_repeat 2 30 0 2170 102 7 3 chrX 147567038 147567331 -29406809 + AluSx SINE Alu 6 299 -13 2394 82 3 3 chrX 147567332 147567637 -29406503 + AluSx SINE Alu 1 305 -7 2368 77 0 3 chrX 147567637 147567937 -29406203 + AluY SINE Alu 1 299 -12 814 171 30 0 chrX 147567937 147568101 -29406039 - L1MB5 LINE L1 -9 6165 5997 7138 215 54 4 chrX 147568112 147570328 -29403812 - L1MB5 LINE L1 -354 5830 3503 10507 96 0 2 chrX 147570331 147572518 -29401622 - L1PA8 LINE L1 0 6487 4299 11331 118 31 25 chrX 147572518 147575473 -29398667 - L1PA8 LINE L1 -3452 3009 5 1174 128 25 0 chrX 147575492 147575696 -29398444 - L1MA4 LINE L1 -4 6296 6088 6438 83 45 24 chrX 147576677 147578421 -29395719 - SVA Other Other -518 1386 57 189 0 0 0 chrX 147578421 147578442 -29395698 + (GGGAGA)n Simple_repeat Simple_repeat 1 21 0 1563 178 76 57 chrX 147579907 147580290 -29393850 + MLT1B LTR MaLR 1 390 0 544 309 20 13 chrX 147580875 147581027 -29393113 + MIR3 SINE MIR 9 161 -47 331 221 57 32 chrX 147581079 147581237 -29392903 + MER113 DNA MER1_type? 83 244 -277 689 229 86 6 chrX 147581290 147581465 -29392675 - MIR SINE MIR -40 222 34 572 274 30 0 chrX 147581639 147581774 -29392366 - MER45A DNA AcHobo -31 147 9 7094 48 6 0 chrX 147582181 147583626 -29390514 + L1PA7 LINE L1 4689 6138 -16 250 234 94 0 chrX 147583773 147583837 -29390303 + MER113 DNA MER1_type? 452 521 0 22 0 0 0 chrX 147583840 147583862 -29390278 + AT_rich Low_complexity Low_complexity 1 22 0 730 267 158 22 chrX 147584495 147584806 -29389334 + L2 LINE L2 2940 3292 -21 318 331 76 11 chrX 147584834 147585018 -29389122 + L1ME4a LINE L1 2383 2578 -3568 399 314 151 41 chrX 147585119 147585718 -29388422 + L1ME4a LINE L1 3283 3979 -2167 364 347 61 10 chrX 147585727 147586248 -29387892 + L1ME4a LINE L1 3964 4511 -1635 220 200 44 0 chrX 147586322 147586367 -29387773 + L2 LINE L2 3224 3270 -2 422 314 152 51 chrX 147586377 147586550 -29387590 + L1ME4a LINE L1 4585 4739 -1407 1713 127 56 0 chrX 147586550 147586802 -29387338 + AluSg SINE Alu 42 307 -3 422 314 152 51 chrX 147586802 147587214 -29386926 + L1ME4a LINE L1 4739 5229 -917 520 301 76 33 chrX 147587259 147587718 -29386422 + L1ME4a LINE L1 5378 5856 -265 467 237 196 12 chrX 147588416 147588589 -29385551 + MIR SINE MIR 8 212 -50 2367 91 0 0 chrX 147589917 147590213 -29383927 - AluSc SINE Alu -13 296 1 303 353 96 58 chrX 147590276 147590432 -29383708 - L3 LINE CR1 -31 1546 1385 184 327 180 0 chrX 147590628 147590778 -29383362 + MIR SINE MIR 86 262 0 23 33 0 0 chrX 147591886 147591916 -29382224 + AT_rich Low_complexity Low_complexity 1 30 0 1717 167 0 14 chrX 147592324 147592611 -29381529 - AluJo SINE Alu -24 288 6 682 164 35 9 chrX 147593124 147593240 -29380900 - 5S rRNA rRNA -1 120 2 2228 100 3 13 chrX 147593923 147594224 -29379916 + AluSq SINE Alu 1 298 -15 704 206 0 0 chrX 147594603 147594729 -29379411 + MER96 DNA MER1_type? 5 130 -45 2245 75 0 0 chrX 147596041 147596319 -29377821 + AluSg SINE Alu 33 310 0 202 326 157 0 chrX 147596440 147596529 -29377611 - L2 LINE L2 -17 3296 3194 275 291 177 0 chrX 147598292 147598467 -29375673 + L2 LINE L2 1882 2087 -1227 346 389 50 0 chrX 147598775 147598955 -29375185 + L2 LINE L2 2312 2500 -814 236 269 42 67 chrX 147599479 147599598 -29374542 - L2 LINE L2 -35 3278 3163 1976 157 0 0 chrX 147599677 147599970 -29374170 - AluJb SINE Alu -19 293 1 4810 216 23 4 chrX 147599974 147601244 -29372896 - L1 LINE L1 -2619 4946 3653 6788 128 11 10 chrX 147601246 147602555 -29371585 - L1 LINE L1 -3770 3795 2486 21 36 0 0 chrX 147602555 147602583 -29371557 + AT_rich Low_complexity Low_complexity 1 28 0 6611 15 20 1 chrX 147602583 147603389 -29370751 - L1PA3 LINE L1 -3 6152 5332 5272 37 0 0 chrX 147603386 147604059 -29370081 + L1PA3 LINE L1 4678 5350 -796 * 13807 156 22 19 chrX 147604054 147606533 -29367607 - L1 LINE L1 -5061 2504 17 368 367 15 47 chrX 147606631 147606972 -29367168 + L2 LINE L2 718 1047 -2267 556 311 53 104 chrX 147607115 147607549 -29366591 + L2 LINE L2 2861 3272 0 203 304 36 0 chrX 147607729 147607785 -29366355 - MIR SINE MIR -118 90 33 1052 208 99 3 chrX 147607944 147608228 -29365912 + MER46C DNA MER2_type 2 312 -26 833 258 39 21 chrX 147608875 147609108 -29365032 + MIR SINE MIR 1 237 -25 787 273 30 19 chrX 147609146 147609386 -29364754 + MIR SINE MIR 4 244 -18 185 336 66 57 chrX 147609529 147609651 -29364489 - L2 LINE L2 -190 3082 2960 214 300 189 0 chrX 147610671 147610761 -29363379 + MIR SINE MIR 27 133 -75 470 287 16 0 chrX 147610891 147611013 -29363127 + MIR3 SINE MIR 39 162 -46 206 279 56 19 chrX 147611069 147611230 -29362910 + (TA)n Simple_repeat Simple_repeat 1 167 0 * 210 283 19 0 chrX 147611181 147611234 -29362906 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 24 0 0 0 chrX 147611965 147611989 -29362151 + AT_rich Low_complexity Low_complexity 1 24 0 345 222 170 35 chrX 147611990 147612161 -29361979 - L1ME4a LINE L1 0 6121 5928 569 301 26 7 chrX 147612242 147612395 -29361745 - L2 LINE L2 0 3272 3117 884 255 73 43 chrX 147612965 147613294 -29360846 - L2 LINE L2 -2 3311 2973 1720 224 45 43 chrX 147613333 147613802 -29360338 - MLT2B1 LTR ERVL -50 470 1 1488 104 50 9 chrX 147614148 147614369 -29359771 - MER30 DNA MER1_type 0 230 1 777 229 127 0 chrX 147615455 147615612 -29358528 - MER45A DNA AcHobo 0 178 2 297 0 0 0 chrX 147615780 147615813 -29358327 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 448 299 0 9 chrX 147615815 147615922 -29358218 - L2 LINE L2 -15 3298 3193 391 353 68 16 chrX 147616387 147616577 -29357563 - L2 LINE L2 -6 3266 3067 704 307 109 14 chrX 147617079 147617276 -29356864 + L1M4 LINE L1 3543 3720 -2426 201 74 0 0 chrX 147617276 147617303 -29356837 + (TCTA)n Simple_repeat Simple_repeat 2 28 0 704 307 109 14 chrX 147617303 147617672 -29356468 + L1M4 LINE L1 3720 4163 -1983 372 259 29 63 chrX 147617878 147618052 -29356088 - L1MEd LINE L1 -5940 179 12 447 195 119 0 chrX 147618058 147618176 -29355964 + L1ME4a LINE L1 5802 5933 -188 23 33 0 0 chrX 147618613 147618643 -29355497 + AT_rich Low_complexity Low_complexity 1 30 0 878 218 163 36 chrX 147618860 147618926 -29355214 + L1MD2 LINE L1 6004 6060 -299 5066 164 13 2 chrX 147618926 147619782 -29354358 + MER6 DNA MER2_type 1 865 0 878 218 163 36 chrX 147619782 147620001 -29354139 + L1MD2 LINE L1 6060 6333 -26 2386 135 41 21 chrX 147620001 147620437 -29353703 - MER65A LTR ERV1 0 445 1 878 218 163 36 chrX 147620437 147620457 -29353683 + L1MD2 LINE L1 6333 6349 -10 926 85 0 0 chrX 147621033 147621163 -29352977 - L1PA14 LINE L1 -268 5895 5766 1348 142 59 4 chrX 147621172 147621411 -29352729 + L1PA14 LINE L1 5903 6154 -7 2754 250 110 49 chrX 147621814 147622562 -29351578 - L2 LINE L2 -4 3309 2608 2064 160 0 0 chrX 147622562 147622868 -29351272 + AluJb SINE Alu 1 306 -6 2754 250 110 49 chrX 147622868 147623526 -29350614 - L2 LINE L2 -705 2608 1818 270 217 3 22 chrX 147623529 147623823 -29350317 + AluJo SINE Alu 3 339 0 464 285 16 0 chrX 147623825 147623948 -29350192 - L2 LINE L2 -1496 1818 1694 470 235 135 24 chrX 147624072 147624242 -29349898 + MER5A DNA MER1_type 1 189 0 1157 236 106 3 chrX 147624424 147624725 -29349415 - L2 LINE L2 -1626 1688 1357 801 276 80 14 chrX 147624732 147625007 -29349133 + L1MC/D LINE L1 5476 5768 -2040 20488 147 24 30 chrX 147625008 147626432 -29347708 - L1 LINE L1 -3076 4489 3057 2178 103 3 0 chrX 147626432 147626746 -29347394 - AluSq SINE Alu 0 313 2 20488 147 24 30 chrX 147626746 147627065 -29347075 - L1 LINE L1 -4508 3057 2737 551 103 23 0 chrX 147627065 147627081 -29347059 - AluSc SINE Alu -220 89 75 1610 72 0 10 chrX 147627081 147627290 -29346850 - AluY SINE Alu 0 311 105 551 103 23 0 chrX 147627290 147627360 -29346780 - AluSc SINE Alu -234 75 1 20488 147 24 30 chrX 147627360 147627789 -29346351 - L1 LINE L1 -4828 2737 2307 1906 168 0 3 chrX 147627789 147628106 -29346034 - AluSx SINE Alu 0 316 1 20488 147 24 30 chrX 147628106 147630350 -29343790 - L1 LINE L1 -5258 2307 12 355 219 55 41 chrX 147630360 147630506 -29343634 - L1M4 LINE L1 -1488 4658 4511 236 172 61 50 chrX 147630550 147630649 -29343491 - L1M4 LINE L1 -1661 4485 4386 1250 266 117 44 chrX 147630772 147631210 -29342930 - L1M4 LINE L1 -1955 4191 3674 189 0 0 0 chrX 147631210 147631231 -29342909 + (CA)n Simple_repeat Simple_repeat 2 22 0 1250 266 117 44 chrX 147631231 147631545 -29342595 - L1M4 LINE L1 -2472 3674 3384 271 275 52 7 chrX 147631687 147631828 -29342312 - L1MDb LINE L1 -5098 1833 1680 238 180 0 0 chrX 147631829 147631879 -29342261 - L1MDb LINE L1 -4961 1462 1413 333 100 0 0 chrX 147632984 147633034 -29341106 + (TG)n Simple_repeat Simple_repeat 2 51 0 1944 252 58 44 chrX 147633035 147633229 -29340911 + L1MC4 LINE L1 6704 6894 -1148 2479 118 6 11 chrX 147633229 147633595 -29340545 + THE1B LTR MaLR 1 364 0 1944 252 58 44 chrX 147633595 147634189 -29339951 + L1MC4 LINE L1 6894 7503 -539 378 279 79 59 chrX 147634241 147634596 -29339544 + L1MC4 LINE L1 7622 7983 -59 285 325 7 7 chrX 147636040 147636194 -29337946 + L1ME4a LINE L1 5756 5909 -212 24 32 0 0 chrX 147636953 147636984 -29337156 + AT_rich Low_complexity Low_complexity 1 31 0 1165 119 18 64 chrX 147638052 147638270 -29335870 - L1PA16 LINE L1 -1 6165 5958 480 291 23 40 chrX 147638459 147638634 -29335506 - MER5B DNA MER1_type -6 172 1 248 291 26 67 chrX 147639122 147639241 -29334899 - LTR67 LTR ERVL -361 190 59 318 153 0 0 chrX 147639679 147639738 -29334402 + (TG)n Simple_repeat Simple_repeat 1 59 0 671 326 36 0 chrX 147639884 147640108 -29334032 - MIR SINE MIR 0 262 31 373 122 33 13 chrX 147641049 147641177 -29332963 - MER53 DNA DNA 0 189 4 234 224 24 176 chrX 147641181 147641306 -29332834 - MIR SINE MIR -155 107 2 486 306 16 52 chrX 147642017 147642324 -29331816 - L1ME3A LINE L1 -243 5927 5632 1722 159 89 0 chrX 147642425 147642695 -29331445 + AluJb SINE Alu 1 294 -18 207 111 0 28 chrX 147642806 147642842 -29331298 + (TTTTA)n Simple_repeat Simple_repeat 2 36 0 4236 152 13 9 chrX 147642871 147644325 -29329815 - L1MA4 LINE L1 -284 6198 4743 477 34 0 0 chrX 147644325 147644384 -29329756 - THE1B LTR MaLR 0 364 306 5226 109 53 10 chrX 147644415 147645233 -29328907 - THE1B-int LTR MaLR -726 854 2 1952 120 31 81 chrX 147645234 147645443 -29328697 - THE1B LTR MaLR 0 364 181 2237 129 3 0 chrX 147645443 147645754 -29328386 - AluSx SINE Alu 0 312 1 1952 120 31 81 chrX 147645754 147645927 -29328213 - THE1B LTR MaLR -183 181 1 3061 150 22 3 chrX 147645927 147646521 -29327619 - L1MA4 LINE L1 -1581 4747 4143 2005 118 45 11 chrX 147646527 147646882 -29327258 - L1MA2 LINE L1 0 6304 5938 5058 127 30 8 chrX 147646897 147647749 -29326391 - L1MA2 LINE L1 0 7723 6853 10584 187 18 6 chrX 147647749 147650081 -29324059 - L1MA2 LINE L1 -1099 6466 4105 2042 143 19 32 chrX 147650077 147650489 -29323651 - L1MA2 LINE L1 -3922 3643 3237 * 4480 231 31 31 chrX 147650480 147653317 -29320823 - L1MA4 LINE L1 -2671 3657 824 255 61 0 0 chrX 147653330 147653363 -29320777 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 3263 45 2 2 chrX 147653363 147653767 -29320373 - L1PA5 LINE L1 -16 6138 5735 1947 18 0 0 chrX 147653767 147653995 -29320145 + L1PA5 LINE L1 5495 5722 -432 * 4221 180 14 12 chrX 147653993 147654080 -29320060 - L1MA4 LINE L1 -4514 814 729 2111 133 10 0 chrX 147654080 147654389 -29319751 - AluSx SINE Alu 0 312 1 4221 180 14 12 chrX 147654389 147655112 -29319028 - L1MA4 LINE L1 -4599 729 3 991 204 14 9 chrX 147656941 147657152 -29316988 - MER20 DNA MER1_type -4 215 4 1232 201 79 50 chrX 147657220 147657599 -29316541 + MLT1B LTR MaLR 1 390 0 1120 141 0 24 chrX 147658083 147658296 -29315844 - L1M3 LINE L1 -645 5526 5319 3880 67 6 6 chrX 147658300 147658823 -29315317 + L1PA5 LINE L1 5629 6154 0 3277 139 51 2 chrX 147658823 147658919 -29315221 + L1MA9 LINE L1 5676 5766 -546 216 97 0 0 chrX 147658919 147658950 -29315190 + (CA)n Simple_repeat Simple_repeat 2 32 0 3277 139 51 2 chrX 147658950 147659452 -29314688 + L1MA9 LINE L1 5766 6309 -3 339 313 42 18 chrX 147659887 147660053 -29314087 - MIR SINE MIR -44 218 49 442 184 0 11 chrX 147660166 147660253 -29313887 + MLT1D LTR MaLR 1 86 -419 * 1818 216 45 9 chrX 147660252 147660697 -29313443 + MLT1C LTR MaLR 7 467 0 * 1963 189 64 2 chrX 147660697 147661103 -29313037 + MLT1D LTR MaLR 75 505 0 1547 153 20 63 chrX 147661389 147661690 -29312450 - AluJo SINE Alu -24 288 1 392 320 39 7 chrX 147661718 147661871 -29312269 - MIR SINE MIR -71 191 34 272 284 27 0 chrX 147662859 147662933 -29311207 + MIR SINE MIR 72 147 -115 408 177 125 0 chrX 147662934 147663030 -29311110 - MER69 DNA AcHobo -1 2525 2418 2472 75 0 10 chrX 147663248 147663555 -29310585 + AluY SINE Alu 1 304 -7 251 368 33 13 chrX 147663812 147663964 -29310176 + MIR3 SINE MIR 24 178 -30 468 86 0 0 chrX 147663976 147664046 -29310094 - MER41B LTR ERV1 -85 550 481 328 303 77 11 chrX 147664098 147664372 -29309768 - HAL1b LINE L1 -8 1340 1049 * 973 288 84 57 chrX 147664360 147665490 -29308650 + L1MEd LINE L1 410 1601 -4709 348 184 105 0 chrX 147667163 147667239 -29306901 + L2 LINE L2 3189 3272 0 660 204 230 0 chrX 147667488 147667640 -29306500 - MER5A DNA MER1_type -2 187 1 27 29 0 0 chrX 147667821 147667855 -29306285 + AT_rich Low_complexity Low_complexity 1 34 0 3419 8 0 0 chrX 147667876 147668261 -29305879 - L1PA2 LINE L1 -1 6154 5770 5774 49 8 0 chrX 147668267 147669016 -29305124 - L1PA7 LINE L1 -3 6151 5397 248 220 0 0 chrX 147869246 147869305 -29104835 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 1972 110 43 4 chrX 147870671 147870952 -29103188 + AluJb SINE Alu 1 292 -20 720 234 165 5 chrX 147871389 147871607 -29102533 + MIR SINE MIR 2 254 -8 606 123 18 9 chrX 147871653 147871767 -29102373 + MER113 DNA MER1_type? 109 223 -298 1280 152 8 0 chrX 147871871 147903519 -29070621 + ALR/Alpha Satellite centromeric 1 31888 -46 17876 45 2 1 chrX 148003519 148006562 -28967578 - L1PA4 LINE L1 -48 6107 3059 3672 102 25 8 chrX 148006597 148007188 -28966952 - L1MA3 LINE L1 -5 6300 5700 2837 141 2 2 chrX 148007189 148007644 -28966496 + L1PA15 LINE L1 5710 6164 -1 2565 167 9 16 chrX 148007676 148008409 -28965731 - L1MA3 LINE L1 -595 5710 4979 6162 82 0 3 chrX 148008443 148008666 -28965474 - L1PB1 LINE L1 -2 6149 5927 2020 156 0 0 chrX 148008666 148008961 -28965179 - AluSx SINE Alu -17 295 1 6162 82 0 3 chrX 148008961 148009826 -28964314 - L1PB1 LINE L1 -224 5927 5103 7039 116 164 2 chrX 148009826 148011100 -28963040 - L1PBa LINE L1 -4748 2115 636 924 172 31 0 chrX 148011102 148011294 -28962846 - L1PBa LINE L1 -6663 200 3 7093 171 5 24 chrX 148011304 148012797 -28961343 - L1MA3 LINE L1 -1141 5005 3542 4656 223 26 74 chrX 148012796 148014131 -28960009 + L1PBa LINE L1 16 1286 -6279 * 6857 128 30 30 chrX 148014126 148015599 -28958541 + L1PBa LINE L1 1163 2765 -4801 528 0 0 0 chrX 148015599 148015666 -28958474 + L1PA2 LINE L1 6089 6155 0 6857 128 30 30 chrX 148015666 148015889 -28958251 + L1PBa LINE L1 2765 2987 -4579 * 7463 200 100 8 chrX 148015861 148017910 -28956230 + L1M1 LINE L1 1734 3980 -3585 17473 44 3 1 chrX 148017910 148021061 -28953079 - L1PA6 LINE L1 -2 6152 2999 14481 99 14 18 chrX 148021161 148023430 -28950710 - L1PA6 LINE L1 -3595 2551 290 3340 144 48 33 chrX 148023956 148024644 -28949496 - L1MB8 LINE L1 -5 6173 5476 11424 200 12 3 chrX 148024644 148027916 -28946224 - L1PA15 LINE L1 0 6165 2849 13380 155 40 7 chrX 148028030 148030738 -28943402 - L1 LINE L1 -3662 3903 1105 517 211 39 16 chrX 148030734 148030862 -28943278 - L1 LINE L1 -7430 135 5 * 6586 123 14 5 chrX 148032937 148034793 -28939347 - L1PA10 LINE L1 -3 6165 4297 180 172 0 121 chrX 148034893 148034951 -28939189 - L3 LINE CR1 -93 1484 1434 251 292 25 50 chrX 148034951 148035071 -28939069 + MIR3 SINE MIR 46 162 -46 721 234 15 25 chrX 148035077 148035274 -28938866 + MER58A DNA MER1_type 27 221 -3 2110 130 3 3 chrX 148035483 148035783 -28938357 - AluSx SINE Alu -9 303 4 2128 130 11 45 chrX 148035870 148036247 -28937893 - THE1B LTR MaLR 0 364 1 11689 95 10 1 chrX 148036247 148037812 -28936328 - THE1B-int LTR MaLR 0 1580 1 2196 126 13 40 chrX 148037812 148038184 -28935956 - THE1B LTR MaLR 0 364 3 2773 185 42 47 chrX 148038371 148038618 -28935522 - L1MB8 LINE L1 -154 7443 7196 2360 98 0 0 chrX 148038618 148038915 -28935225 - AluY SINE Alu -14 297 1 2773 185 42 47 chrX 148038915 148039406 -28934734 - L1MB8 LINE L1 -401 7196 6709 371 186 8 34 chrX 148039516 148039634 -28934506 - L1MB8 LINE L1 -821 6744 6630 8790 54 3 0 chrX 148039662 148041562 -28932578 - L1PA6 LINE L1 -3 6466 4565 13905 118 14 24 chrX 148041562 148043983 -28930157 - L1PA6 LINE L1 -3033 3428 1033 737 82 0 0 chrX 148043973 148044070 -28930070 - L1PA6 LINE L1 -6364 97 1 * 18782 150 65 10 chrX 148044079 148045492 -28928648 - L1MB8 LINE L1 -3565 4000 2666 203 0 37 0 chrX 148045492 148045519 -28928621 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 18782 150 65 10 chrX 148045519 148047889 -28926251 - L1MB8 LINE L1 -4899 2666 12 2925 232 98 6 chrX 148047893 148048967 -28925173 - L1M4 LINE L1 -2360 3786 2614 3433 214 20 15 chrX 148049047 148049975 -28924165 + L1P LINE L1 4400 5332 -814 7514 32 1 0 chrX 148049975 148051567 -28922573 + L1PA3 LINE L1 4566 6152 -3 1348 180 94 88 chrX 148051590 148052101 -28922039 + L1 LINE L1 3050 3563 -2583 6032 113 20 8 chrX 148052114 148053128 -28921012 - L1MA1 LINE L1 0 6302 5281 * 7568 17 0 0 chrX 148053122 148054637 -28919503 - L1HS LINE L1 -3 6152 4638 2250 196 16 4 chrX 148054647 148055193 -28918947 - L1 LINE L1 -814 5332 4780 297 0 0 0 chrX 148057090 148057123 -28917017 + (CA)n Simple_repeat Simple_repeat 1 33 0 234 105 0 0 chrX 148057892 148057930 -28916210 + L1MA3 LINE L1 6268 6305 0 7550 34 0 0 chrX 148058681 148059836 -28914304 + L1PA3 LINE L1 5001 6155 0 224 355 8 8 chrX 148060412 148060536 -28913604 + C-rich Low_complexity Low_complexity 4 127 0 637 205 113 7 chrX 148061638 148061789 -28912351 - MIR SINE MIR -3 259 93 1456 188 16 26 chrX 148062093 148062191 -28911949 - MER90 LTR ERV1 0 614 517 1885 158 91 17 chrX 148062191 148062552 -28911588 + MLT1B LTR MaLR 1 388 -2 1456 188 16 26 chrX 148062552 148062757 -28911383 - MER90 LTR ERV1 -97 517 314 685 215 62 6 chrX 148062766 148062943 -28911197 - MER90 LTR ERV1 -386 189 3 783 238 11 26 chrX 148062980 148063169 -28910971 + MIR SINE MIR 76 261 -1 246 311 49 0 chrX 148063216 148063277 -28910863 + L2 LINE L2 3116 3179 -93 212 233 0 0 chrX 148063296 148063339 -28910801 - MIR SINE MIR -1 261 219 203 377 82 16 chrX 148063473 148063595 -28910545 + L2 LINE L2 3121 3250 -22 318 353 82 8 chrX 148063883 148064005 -28910135 + MIR3 SINE MIR 37 167 -41 737 189 0 8 chrX 148066599 148066731 -28907409 + FLAM_C SINE Alu 3 133 0 268 281 37 44 chrX 148066736 148066871 -28907269 + MIR SINE MIR 118 251 -11 431 295 47 108 chrX 148067541 148067913 -28906227 + L2 LINE L2 2922 3270 -2 253 258 45 0 chrX 148068229 148068318 -28905822 + GA-rich Low_complexity Low_complexity 2 94 0 2266 85 7 29 chrX 148069125 148069432 -28904708 + AluSx SINE Alu 1 300 -12 283 293 0 27 chrX 148069541 148069616 -28904524 + MIR SINE MIR 34 106 -102 281 316 94 26 chrX 148070027 148070144 -28903996 + L2 LINE L2 3148 3272 0 202 301 176 20 chrX 148072373 148072526 -28901614 - L2 LINE L2 -119 3153 2977 301 273 165 54 chrX 148072570 148072830 -28901310 - L2 LINE L2 -414 2900 2612 1767 195 90 11 chrX 148072840 148073318 -28900822 - L1M4c LINE L1 -3903 2481 1966 1255 254 88 72 chrX 148073819 148074433 -28899707 + MLT1E2 LTR MaLR 1 626 0 968 217 70 58 chrX 148075249 148075576 -28898564 + L1MD2 LINE L1 6028 6358 -1 13795 38 1 0 chrX 148075641 148078081 -28896059 - L1PA5 LINE L1 -6 6148 3708 192 40 0 0 chrX 148078742 148078767 -28895373 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 186 299 0 30 chrX 148079626 148079693 -28894447 - MIR SINE MIR -42 220 156 20528 32 1 0 chrX 148080115 148082614 -28891526 - L1P LINE L1 -1395 4751 2251 996 119 0 0 chrX 148082718 148082861 -28891279 + MSTC LTR MaLR 286 428 0 271 254 63 16 chrX 148083008 148083071 -28891069 + L2 LINE L2 3203 3268 -4 2185 121 137 11 chrX 148083192 148083572 -28890568 + MSTA LTR MaLR 1 428 0 229 152 0 0 chrX 148084918 148084951 -28889189 - MER58 DNA MER1_type -342 44 12 203 375 72 0 chrX 148085183 148085335 -28888805 - L3b LINE CR1 -168 1415 1253 568 288 41 29 chrX 148086323 148086639 -28887501 - L1PA12 LINE L1 -7261 320 1 3998 208 57 107 chrX 148086642 148087803 -28886337 - L1M4 LINE L1 -699 5485 4283 927 191 0 0 chrX 148087803 148087960 -28886180 - FRAM SINE Alu -15 161 5 3998 208 57 107 chrX 148087960 148088330 -28885810 - L1M4 LINE L1 -1901 4283 3896 791 316 163 24 chrX 148089324 148090069 -28884071 + L2 LINE L2 2416 3266 -6 22 0 0 0 chrX 148090269 148090291 -28883849 + AT_rich Low_complexity Low_complexity 1 22 0 269 315 79 0 chrX 148090857 148090946 -28883194 + L3 LINE CR1 1480 1575 -2 187 311 182 30 chrX 148091496 148091628 -28882512 + MIR SINE MIR 3 154 -108 2932 47 2 49 chrX 148091836 148092241 -28881899 - L1PA8 LINE L1 -3 6169 5784 2046 139 42 24 chrX 148093009 148093340 -28880800 + MER1B DNA MER1_type 1 337 0 364 258 65 0 chrX 148093379 148093472 -28880668 + MIR SINE MIR 23 121 -87 5074 129 45 27 chrX 148093473 148093864 -28880276 - L1MA8 LINE L1 -109 6182 5800 333 0 0 0 chrX 148093864 148093901 -28880239 + (CA)n Simple_repeat Simple_repeat 2 38 0 5074 129 45 27 chrX 148093901 148094242 -28879898 - L1MA8 LINE L1 -491 5800 5434 1291 108 75 19 chrX 148094242 148094456 -28879684 - L1PA10 LINE L1 -5 6163 5938 5074 129 45 27 chrX 148094456 148094672 -28879468 - L1MA8 LINE L1 -857 5434 5223 210 206 29 88 chrX 148094940 148095008 -28879132 - MIR3 SINE MIR -32 176 113 909 228 42 0 chrX 148095034 148095223 -28878917 - MIR SINE MIR 0 262 66 7406 35 1 1 chrX 148095302 148096708 -28877432 - L1PA3 LINE L1 -1 6154 4749 15895 54 1 3 chrX 148096708 148098702 -28875438 + L1P LINE L1 160 2149 -3997 7317 34 2 1 chrX 148098806 148099840 -28874300 + L1PA4 LINE L1 5143 6177 0 4851 138 54 7 chrX 148100186 148101038 -28873102 + L1PA16 LINE L1 5270 6161 -5 462 270 99 50 chrX 148101059 148101381 -28872759 - L1M4b LINE L1 -4320 2818 2481 1436 247 123 20 chrX 148101492 148102201 -28871939 - L1M4b LINE L1 -4551 2408 1626 351 0 0 0 chrX 148102201 148102240 -28871900 + (CA)n Simple_repeat Simple_repeat 2 40 0 1436 247 123 20 chrX 148102240 148102254 -28871886 - L1M4b LINE L1 -5333 1626 1615 834 235 5 10 chrX 148102256 148102456 -28871684 - L1M4b LINE L1 -5365 1494 1296 2401 261 55 71 chrX 148102903 148103915 -28870225 - L1M4b LINE L1 -5635 1224 11 620 152 0 0 chrX 148103940 148104032 -28870108 - U4 snRNA snRNA -29 116 25 447 222 30 10 chrX 148104114 148104213 -28869927 + MIR3 SINE MIR 105 205 -3 2546 43 0 3 chrX 148107323 148107624 -28866516 + AluY SINE Alu 1 300 -11 2088 142 3 0 chrX 148107635 148107945 -28866195 + AluSx SINE Alu 1 311 -1 768 230 86 79 chrX 148109435 148109840 -28864300 - HAL1 LINE L1 -185 2322 1915 578 220 40 27 chrX 148109860 148110010 -28864130 - HAL1 LINE L1 -1049 1458 1307 322 132 0 0 chrX 148110015 148110068 -28864072 + MADE1 DNA Mariner 27 79 -1 266 234 234 0 chrX 148110071 148110208 -28863932 - HAL1 LINE L1 -1222 1285 1117 2754 235 155 45 chrX 148110292 148110553 -28863587 - L1MC4 LINE L1 -30 8012 7781 862 111 0 76 chrX 148110553 148110697 -28863443 + FLAM_C SINE Alu 1 133 0 2754 235 155 45 chrX 148110697 148110987 -28863153 - L1MC4 LINE L1 -261 7781 7524 793 164 0 0 chrX 148110987 148111115 -28863025 - FLAM_C SINE Alu -5 128 1 2754 235 155 45 chrX 148111115 148112505 -28861635 - L1MC4 LINE L1 -518 7524 5839 729 122 0 17 chrX 148112514 148112629 -28861511 - FLAM_A SINE Alu -9 133 21 1135 294 80 78 chrX 148112744 148113582 -28860558 - HAL1 LINE L1 -1666 841 2 1852 132 45 14 chrX 148114322 148114611 -28859529 + AluJb SINE Alu 3 300 -12 271 174 267 12 chrX 148118176 148118262 -28855878 - MIR3 SINE MIR -87 121 14 182 319 0 0 chrX 148119359 148119406 -28854734 + MIR SINE MIR 204 250 -12 1117 260 73 58 chrX 148120509 148121152 -28852988 - L1ME4a LINE L1 -91 6030 5378 24 0 0 0 chrX 148121540 148121564 -28852576 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chrX 148121589 148121626 -28852514 + AT_rich Low_complexity Low_complexity 1 37 0 539 210 62 14 chrX 148121646 148121812 -28852328 + L1MA9 LINE L1 6119 6284 -7 1324 284 78 16 chrX 148121904 148122456 -28851684 - L1ME4a LINE L1 -191 5930 5345 2264 116 0 0 chrX 148122600 148122910 -28851230 - AluSx SINE Alu -2 310 1 197 221 0 103 chrX 148122948 148123016 -28851124 - MER5A DNA MER1_type -22 167 107 598 158 10 9 chrX 148123087 148123219 -28850921 - L1MA9 LINE L1 -1 6290 6163 257 381 0 0 chrX 148123561 148123645 -28850495 - L2 LINE L2 -11 3261 3178 367 299 246 5 chrX 148123713 148123920 -28850220 - MIR SINE MIR 0 262 6 2166 92 7 0 chrX 148124986 148125299 -28848841 - AluSp SINE Alu 0 315 1 180 0 0 0 chrX 148126072 148126092 -28848048 + (CAA)n Simple_repeat Simple_repeat 2 21 0 221 339 135 52 chrX 148127066 148127296 -28846844 + L2 LINE L2 3019 3267 -5 6198 126 89 14 chrX 148127430 148128575 -28845565 - Tigger3b DNA MER2_type 0 1231 1 1203 282 70 25 chrX 148129299 148129895 -28844245 + L1ME3A LINE L1 5303 5925 -245 * 4782 113 33 11 chrX 148129381 148130130 -28844010 + L1PA15 LINE L1 5400 6165 0 247 380 0 0 chrX 148131067 148131146 -28842994 - MIR3 SINE MIR -46 162 84 232 315 117 31 chrX 148132091 148132253 -28841887 + L2 LINE L2 3132 3307 -6 2224 95 0 0 chrX 148133027 148133312 -28840828 - AluSg SINE Alu -4 306 22 652 133 0 19 chrX 148133538 148133643 -28840497 - L1PB4 LINE L1 -8 6148 6046 244 299 172 30 chrX 148133717 148133851 -28840289 - MIR3 SINE MIR -11 197 45 3646 208 55 58 chrX 148134617 148135441 -28838699 - L1MD2 LINE L1 -7 6352 5531 2032 113 3 0 chrX 148135441 148135725 -28838415 - AluSx SINE Alu -27 285 1 3646 208 55 58 chrX 148135725 148136046 -28838094 - L1MD2 LINE L1 -828 5531 5211 2156 214 90 13 chrX 148136059 148136615 -28837525 + L1ME1 LINE L1 827 1425 -5115 3447 209 53 44 chrX 148137008 148138103 -28836037 + L1ME1 LINE L1 1431 2535 -4005 1200 218 17 101 chrX 148138122 148138260 -28835880 + L1ME1 LINE L1 4694 4842 -1698 1114 170 9 27 chrX 148138260 148138483 -28835657 - MER20 DNA MER1_type 0 219 1 1200 218 17 101 chrX 148138483 148138937 -28835203 + L1ME1 LINE L1 4842 5236 -1304 2303 231 4 12 chrX 148138942 148139444 -28834696 + MLT1D LTR MaLR 1 498 -7 3099 224 45 19 chrX 148139613 148140723 -28833417 + L1ME1 LINE L1 5400 6543 -17 2248 108 0 0 chrX 148140975 148141270 -28832870 - AluSx SINE Alu -17 295 1 1891 179 43 56 chrX 148141929 148142375 -28831765 + MER41B LTR ERV1 162 601 -34 22 56 0 0 chrX 148142532 148142568 -28831572 + AT_rich Low_complexity Low_complexity 1 36 0 3306 224 73 45 chrX 148143265 148146169 -28827971 + L1MCb LINE L1 799 3988 -2576 5337 124 21 9 chrX 148146276 148147165 -28826975 - L1MA1 LINE L1 -126 6176 5281 * 42443 49 5 4 chrX 148147159 148153294 -28820846 - L1PA4 LINE L1 -3 6152 13 1062 223 11 4 chrX 148153289 148153549 -28820591 - L1 LINE L1 -3103 4462 4201 * 3188 206 6 20 chrX 148153546 148154203 -28819937 - L1 LINE L1 -6900 665 18 5793 182 108 18 chrX 148154517 148156732 -28817408 - Charlie1 DNA MER1_type -6 2755 223 183 80 0 0 chrX 148156732 148156757 -28817383 + (TG)n Simple_repeat Simple_repeat 1 25 0 5793 182 108 18 chrX 148156757 148157003 -28817137 - Charlie1 DNA MER1_type -2538 223 1 1869 166 0 0 chrX 148157266 148157562 -28816578 + AluJb SINE Alu 1 296 -16 2225 164 31 24 chrX 148157945 148158361 -28815779 - MSTB1 LTR MaLR -13 419 1 1578 206 0 10 chrX 148158509 148158839 -28815301 + AluJo SINE Alu 1 312 0 624 139 0 0 chrX 148159172 148159273 -28814867 - FLAM_A SINE Alu -16 126 26 23 54 0 0 chrX 148159328 148159365 -28814775 + AT_rich Low_complexity Low_complexity 1 37 0 4118 130 11 3 chrX 148159366 148160020 -28814120 - L1MA1 LINE L1 -6 7715 7057 14234 174 32 15 chrX 148160020 148161143 -28812997 - L1MA1 LINE L1 -1263 6302 5199 241 156 0 0 chrX 148161143 148161188 -28812952 + MADE1 DNA Mariner 36 80 0 14234 174 32 15 chrX 148161188 148165135 -28809005 - L1MA1 LINE L1 -2366 5199 1103 559 211 39 16 chrX 148165129 148165257 -28808883 - L1MA1 LINE L1 -7430 135 5 * 6646 123 14 5 chrX 148167332 148169190 -28804950 - L1PA10 LINE L1 -3 6165 4297 180 172 0 121 chrX 148169290 148169348 -28804792 - L3 LINE CR1 -93 1484 1434 255 292 25 50 chrX 148169348 148169468 -28804672 + MIR3 SINE MIR 46 162 -46 721 234 15 25 chrX 148169474 148169671 -28804469 + MER58A DNA MER1_type 27 221 -3 2110 130 3 3 chrX 148169880 148170180 -28803960 - AluSx SINE Alu -9 303 4 2128 130 11 45 chrX 148170267 148170644 -28803496 - THE1B LTR MaLR 0 364 1 11689 95 10 1 chrX 148170644 148172209 -28801931 - THE1B-int LTR MaLR 0 1580 1 2196 126 13 40 chrX 148172209 148172581 -28801559 - THE1B LTR MaLR 0 364 3 2773 185 42 47 chrX 148172768 148173015 -28801125 - L1MB8 LINE L1 -154 6024 5777 2263 99 7 0 chrX 148173015 148173309 -28800831 - AluY SINE Alu -15 296 1 2773 185 42 47 chrX 148173309 148173800 -28800340 - L1MB8 LINE L1 -401 5777 5290 371 186 8 34 chrX 148173900 148174018 -28800122 - L1MB8 LINE L1 -821 5325 5211 8530 54 3 0 chrX 148174046 148175911 -28798229 - L1PA6 LINE L1 -3 6151 4285 628 25 0 0 chrX 148175911 148175992 -28798148 - L1PA6 LINE L1 -1816 4330 4250 * 19801 107 12 14 chrX 148175989 148179100 -28795040 - L1P LINE L1 -3030 3116 11 1736 241 30 6 chrX 148179123 148179616 -28794524 - L1MB8 LINE L1 -948 5198 4694 1208 229 36 34 chrX 148179602 148179986 -28794154 - L1MB8 LINE L1 -1984 4162 3778 * 5061 168 110 16 chrX 148179986 148182060 -28792080 - L1MA2 LINE L1 0 7723 5396 3383 168 30 5 chrX 148182060 148182686 -28791454 - L1PA16 LINE L1 0 6166 5525 1490 129 15 16 chrX 148182686 148183033 -28791107 + L1PA16 LINE L1 5176 5521 -645 * 4584 225 41 16 chrX 148183030 148184403 -28789737 - L1MA2 LINE L1 -2157 5408 4002 13101 80 5 2 chrX 148184405 148186987 -28787153 - L1PA7 LINE L1 -8 6461 3871 15276 127 24 21 chrX 148187385 148190221 -28783919 - L1PA7 LINE L1 -2585 3876 1033 737 82 0 0 chrX 148190211 148190308 -28783832 - L1PA7 LINE L1 -6364 97 1 * 18743 150 65 10 chrX 148190317 148191728 -28782412 - L1MA2 LINE L1 -3565 4000 2669 203 0 37 0 chrX 148191728 148191755 -28782385 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 18743 150 65 10 chrX 148191755 148194124 -28780016 - L1MA2 LINE L1 -4896 2669 12 2925 232 98 6 chrX 148194128 148195202 -28778938 - L1M4 LINE L1 -2360 3786 2614 3485 212 23 15 chrX 148195282 148196208 -28777932 + L1P LINE L1 4400 5332 -814 2154 54 0 17 chrX 148196208 148196505 -28777635 + L1P LINE L1 4566 4857 -1289 306 294 18 18 chrX 148296755 148296864 -28677276 - MIR SINE MIR -135 127 19 313 358 54 0 chrX 148297132 148297280 -28676860 - MIR3 SINE MIR -21 187 32 2446 81 0 3 chrX 148297992 148298302 -28675838 - AluSx SINE Alu -3 309 1 242 224 0 0 chrX 148300368 148300417 -28673723 + MIR SINE MIR 101 149 -113 272 354 8 8 chrX 148301782 148301909 -28672231 + GA-rich Low_complexity Low_complexity 2 128 0 526 280 120 25 chrX 148303200 148303400 -28670740 - MIR SINE MIR -11 251 33 819 258 12 35 chrX 148303449 148303690 -28670450 - MIR SINE MIR -6 256 21 187 254 63 32 chrX 148303889 148303952 -28670188 - L2 LINE L2 0 3313 3249 1681 153 49 6 chrX 148307703 148308030 -28666110 + L1MB8 LINE L1 5836 6176 -2 314 199 149 35 chrX 148308472 148308613 -28665527 - MER103 DNA DNA -2 164 8 336 83 0 0 chrX 148308626 148308674 -28665466 + (CA)n Simple_repeat Simple_repeat 2 49 0 38 22 0 0 chrX 148309708 148309753 -28664387 + AT_rich Low_complexity Low_complexity 1 45 0 243 0 0 0 chrX 148311374 148311401 -28662739 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 516 303 59 35 chrX 148312337 148312591 -28661549 - L2 LINE L2 0 3313 3054 2579 45 0 3 chrX 148312768 148313077 -28661063 + AluY SINE Alu 1 308 -3 237 306 165 36 chrX 148315011 148315344 -28658796 + L2 LINE L2 2897 3272 0 297 200 0 0 chrX 148316568 148316633 -28657507 + L1 LINE L1 4789 4853 -1293 1463 130 30 26 chrX 148316635 148316904 -28657236 - L1PA15 LINE L1 -1 6164 5895 1420 98 5 5 chrX 148316904 148317099 -28657041 + L1PA8A LINE L1 5911 6113 -18 2670 133 2 0 chrX 148317117 148317532 -28656608 - L1PA15 LINE L1 -253 5912 5497 268 250 107 18 chrX 148317640 148317752 -28656388 + MER103 DNA DNA 8 129 -37 222 91 0 0 chrX 148318147 148318180 -28655960 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chrX 148318180 148318204 -28655936 + AT_rich Low_complexity Low_complexity 1 24 0 240 378 0 0 chrX 148318326 148318408 -28655732 - MIR SINE MIR -82 126 45 414 368 23 0 chrX 148318833 148318966 -28655174 + L2 LINE L2 3137 3272 0 231 88 0 0 chrX 148319188 148319222 -28654918 + (TC)n Simple_repeat Simple_repeat 2 35 0 188 267 22 0 chrX 148319584 148319629 -28654511 - MER5B DNA MER1_type -49 129 84 1387 135 29 8 chrX 148320268 148320513 -28653627 - MER58B DNA MER1_type 0 341 92 7237 89 5 19 chrX 148320785 148321857 -28652283 + MER11C LTR ERVK 1 1057 -14 5407 89 34 11 chrX 148322120 148322882 -28651258 - LTR17 LTR ERV1 0 780 1 957 89 7 7 chrX 148322884 148323019 -28651121 - HERV17 LTR ERV1 -3 8623 8489 422 182 113 63 chrX 148328036 148328205 -28645935 + MIR3 SINE MIR 11 181 -62 203 170 21 0 chrX 148328504 148328551 -28645589 + CT-rich Low_complexity Low_complexity 2 49 0 180 111 0 0 chrX 148329013 148329040 -28645100 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 21 0 0 0 chrX 148329308 148329329 -28644811 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 45 0 chrX 148330432 148330499 -28643641 + L2 LINE L2 3244 3313 0 187 365 74 29 chrX 148330763 148331007 -28643133 + L2 LINE L2 2554 2808 -506 296 330 11 0 chrX 148331798 148331892 -28642248 + MIR3 SINE MIR 108 202 -6 746 98 0 8 chrX 148331931 148332054 -28642086 + (TA)n Simple_repeat Simple_repeat 1 122 0 194 91 30 0 chrX 148333642 148333675 -28640465 + CT-rich Low_complexity Low_complexity 3 36 0 234 81 0 0 chrX 148333677 148333714 -28640426 + (CA)n Simple_repeat Simple_repeat 2 38 0 816 224 57 0 chrX 148334021 148334231 -28639909 + L1PBa LINE L1 330 551 -6312 1353 148 0 49 chrX 148334291 148334575 -28639565 - L1MA4A LINE L1 -447 5856 5587 181 290 0 43 chrX 148336655 148336724 -28637416 - MER5A DNA MER1_type -4 185 120 493 289 14 66 chrX 148338884 148339095 -28635045 - MIR SINE MIR -45 217 18 574 265 109 52 chrX 148339327 148339557 -28634583 - MIR SINE MIR -19 243 1 21 0 0 0 chrX 148339829 148339850 -28634290 + AT_rich Low_complexity Low_complexity 1 21 0 214 261 109 33 chrX 148340483 148340575 -28633565 + MIR SINE MIR 157 255 -7 2801 169 60 0 chrX 148340685 148341247 -28632893 + L1MB5 LINE L1 5579 6174 0 23 0 0 0 chrX 148344222 148344245 -28629895 + AT_rich Low_complexity Low_complexity 1 23 0 196 369 92 46 chrX 148344284 148344612 -28629528 + L2 LINE L2 2874 3216 -56 351 312 9 9 chrX 148344618 148344727 -28629413 - MIR3 SINE MIR -43 165 57 252 0 0 0 chrX 148345265 148345293 -28628847 + (TG)n Simple_repeat Simple_repeat 2 29 0 456 333 14 0 chrX 148345432 148345579 -28628561 - MIR SINE MIR -73 189 41 263 293 63 46 chrX 148345688 148345862 -28628278 + MIR SINE MIR 34 210 -52 320 298 91 35 chrX 148347253 148347451 -28626689 + MIR SINE MIR 8 216 -46 277 229 86 14 chrX 148348073 148348143 -28625997 - MER91A DNA MER1_type 0 196 122 333 237 169 81 chrX 148348227 148348463 -28625677 - L3 LINE CR1 -21 1556 1300 1233 217 54 30 chrX 148349408 148349740 -28624400 + MER58B DNA MER1_type 2 341 0 373 224 0 24 chrX 148349959 148350044 -28624096 + MIR SINE MIR 87 169 -93 495 312 35 23 chrX 148350794 148350967 -28623173 - L2 LINE L2 -639 2675 2501 2680 204 21 33 chrX 148351992 148352561 -28621579 - REP3 LTR ERV 0 562 1 193 245 160 21 chrX 148352930 148353024 -28621116 + MIR SINE MIR 16 122 -86 284 272 8 8 chrX 148353461 148353586 -28620554 + L1MB7 LINE L1 3865 3989 -2157 431 311 93 26 chrX 148354724 148354917 -28619223 + MIR SINE MIR 6 211 -51 359 272 34 48 chrX 148355541 148355688 -28618452 - MIR SINE MIR 0 262 118 508 222 0 7 chrX 148355689 148355824 -28618316 + L1MB7 LINE L1 5186 5319 -827 491 104 0 104 chrX 148356252 148356295 -28617845 + L1MB7 LINE L1 5324 5370 -814 1256 164 116 65 chrX 148356295 148356649 -28617491 + MLT1A2 LTR MaLR 3 374 0 491 104 0 104 chrX 148356649 148356711 -28617429 + L1MB7 LINE L1 5370 5418 -766 2289 166 26 4 chrX 148356711 148357166 -28616974 + L1MB7 LINE L1 5718 6184 0 242 263 10 81 chrX 148357168 148357267 -28616873 - MIR SINE MIR -170 92 1 1437 190 61 71 chrX 148359226 148359620 -28614520 + MLT1B LTR MaLR 1 390 0 1352 198 9 30 chrX 148359900 148360233 -28613907 - L1MB7 LINE L1 -41 6143 5818 1411 170 15 114 chrX 148360251 148360656 -28613484 + MLT1A1 LTR MaLR 1 365 0 354 266 87 48 chrX 148361850 148362246 -28611894 + LTR16A1 LTR ERVL 1 445 -12 190 250 133 17 chrX 148362337 148362397 -28611743 + MIR3 SINE MIR 119 185 -23 21 0 0 0 chrX 148363004 148363025 -28611115 + AT_rich Low_complexity Low_complexity 1 21 0 531 274 12 0 chrX 148367666 148367830 -28606310 - MER103 DNA DNA 0 166 1 1101 57 0 0 chrX 148369310 148369451 -28604689 + L1PA6 LINE L1 6012 6152 -2 208 264 28 14 chrX 148369465 148369537 -28604603 + MIR SINE MIR 180 252 -10 51 31 0 0 chrX 148369537 148369602 -28604538 + AT_rich Low_complexity Low_complexity 1 65 0 1007 106 0 0 chrX 148369893 148370044 -28604096 - L1PA13 LINE L1 -5 6158 6008 607 328 97 29 chrX 148370058 148370536 -28603604 - L1 LINE L1 -1175 4971 4457 490 313 84 26 chrX 148372771 148373000 -28601140 + MIR SINE MIR 3 241 -21 894 220 110 5 chrX 148373359 148373577 -28600563 - MIR SINE MIR -2 260 20 283 301 81 41 chrX 148375594 148375717 -28598423 + MIR SINE MIR 16 143 -65 253 330 18 28 chrX 148375800 148375909 -28598231 - MIR SINE MIR -104 158 51 410 321 8 4 chrX 148376197 148376349 -28597791 + MIR SINE MIR 28 145 -63 286 294 73 0 chrX 148376523 148376632 -28597508 + MIR SINE MIR 140 256 -6 4725 89 39 17 chrX 148376830 148377528 -28596612 + L1PA14 LINE L1 5449 6161 0 350 305 9 0 chrX 148378404 148378509 -28595631 + MIR SINE MIR 25 130 -78 518 250 179 19 chrX 148379443 148379655 -28594485 + MIR SINE MIR 12 257 -5 328 303 71 32 chrX 148379657 148379812 -28594328 + L2 LINE L2 3112 3272 0 202 288 17 0 chrX 148379855 148379914 -28594226 + GA-rich Low_complexity Low_complexity 2 61 0 202 280 20 0 chrX 148381321 148381371 -28592769 + L2 LINE L2 3132 3182 -90 208 302 167 8 chrX 148381378 148381504 -28592636 + MIR SINE MIR 117 262 0 1153 109 0 0 chrX 148382213 148382378 -28591762 + AluYa5 SINE Alu 146 310 -1 357 62 0 0 chrX 148384112 148384160 -28589980 + (TG)n Simple_repeat Simple_repeat 1 48 0 1583 215 14 9 chrX 148385316 148385665 -28588475 + MLT1A1 LTR MaLR 15 365 0 629 110 20 0 chrX 148386044 148386144 -28587996 + L1MA3 LINE L1 5853 5954 -351 300 100 33 0 chrX 148388347 148388407 -28585733 - L1MA2 LINE L1 0 6304 6243 1094 219 11 26 chrX 148388769 148389038 -28585102 - MER58B DNA MER1_type 0 341 77 308 287 82 25 chrX 148389268 148389323 -28584817 - MIR3 SINE MIR -3 205 155 429 20 0 0 chrX 148389323 148389373 -28584767 + (CA)n Simple_repeat Simple_repeat 2 51 0 308 287 82 25 chrX 148389373 148389495 -28584645 - MIR3 SINE MIR -53 155 20 710 297 52 4 chrX 148389686 148389915 -28584225 + MIR SINE MIR 23 262 0 204 135 0 0 chrX 148390917 148390954 -28583186 + (GGAA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chrX 148391377 148391398 -28582742 + AT_rich Low_complexity Low_complexity 1 21 0 953 293 81 56 chrX 148391757 148392238 -28581902 - L3 LINE CR1 -101 1476 984 1398 128 38 45 chrX 148393311 148393486 -28580654 + L1MA7 LINE L1 5998 6172 -119 2317 93 21 0 chrX 148393486 148393777 -28580363 + AluSc SINE Alu 1 297 -12 1398 128 38 45 chrX 148393777 148393891 -28580249 + L1MA7 LINE L1 6172 6285 -6 348 24 0 0 chrX 148394709 148394750 -28579390 + (CA)n Simple_repeat Simple_repeat 2 42 0 432 186 77 0 chrX 148395497 148395595 -28578545 - MIR3 SINE MIR -51 157 62 2245 94 0 13 chrX 148395626 148395925 -28578215 - AluSg SINE Alu -3 307 13 189 121 0 0 chrX 148396125 148396158 -28577982 + (TG)n Simple_repeat Simple_repeat 2 34 0 398 339 24 36 chrX 148396367 148396535 -28577605 + MIR3 SINE MIR 18 183 -25 281 68 23 0 chrX 148397035 148397079 -28577061 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 204 40 0 0 chrX 148397321 148397346 -28576794 + (TG)n Simple_repeat Simple_repeat 2 26 0 6668 110 16 35 chrX 148397733 148398824 -28575316 + MER11C LTR ERVK 1 1071 0 745 342 53 17 chrX 148399131 148399488 -28574652 + L3 LINE CR1 1083 1452 -125 251 192 0 19 chrX 148401405 148401457 -28572683 - L2 LINE L2 -1 3312 3262 1092 200 78 25 chrX 148402615 148402935 -28571205 - LTR55 LTR ERV -172 376 40 205 256 12 98 chrX 148402955 148403037 -28571103 + L2 LINE L2 3192 3266 -47 422 280 25 25 chrX 148403400 148403557 -28570583 + MER5B DNA MER1_type 3 159 -19 1966 135 3 17 chrX 148404398 148404590 -28569550 + AluJb SINE Alu 1 189 -123 4337 111 5 0 chrX 148404590 148405222 -28568918 - MER41B LTR ERV1 0 635 1 1966 135 3 17 chrX 148405222 148405326 -28568814 + AluJb SINE Alu 189 293 -19 750 228 96 36 chrX 148405669 148405888 -28568252 + MIR SINE MIR 3 234 -28 243 188 0 0 chrX 148408041 148408089 -28566051 + (CA)n Simple_repeat Simple_repeat 2 49 0 246 62 0 0 chrX 148408792 148408824 -28565316 + (GA)n Simple_repeat Simple_repeat 1 32 0 270 56 0 0 chrX 148410348 148410384 -28563756 + (TG)n Simple_repeat Simple_repeat 2 37 0 210 136 0 0 chrX 148411074 148411118 -28563022 + (TG)n Simple_repeat Simple_repeat 2 45 0 975 196 29 24 chrX 148411165 148411374 -28562766 - MER63A DNA MER1_type 0 210 1 211 0 0 81 chrX 148412159 148412196 -28561944 + (CCCCCA)n Simple_repeat Simple_repeat 2 35 0 195 42 0 0 chrX 148412508 148412532 -28561608 + (CAA)n Simple_repeat Simple_repeat 2 25 0 261 79 0 0 chrX 148416583 148416621 -28557519 - L2 LINE L2 0 3313 3276 441 299 35 7 chrX 148418669 148418813 -28555327 + MIR SINE MIR 2 149 -113 331 327 14 77 chrX 148419069 148419277 -28554863 - MIR SINE MIR -48 214 20 1052 157 0 0 chrX 148422213 148422379 -28551761 + FRAM SINE Alu 1 40 0 2154 110 19 10 chrX 148422389 148422698 -28551442 + AluSx SINE Alu 1 312 0 508 306 38 6 chrX 148422719 148422879 -28551261 + MIR3 SINE MIR 17 181 -27 590 269 137 77 chrX 148423354 148423823 -28550317 + L2 LINE L2 2817 3313 0 284 204 0 0 chrX 148423929 148423983 -28550157 + L2 LINE L2 3254 3307 -6 284 352 107 9 chrX 148424183 148424399 -28549741 - MIR SINE MIR -6 256 20 1702 173 65 3 chrX 148424556 148424892 -28549248 + MER58D DNA MER1_type 30 386 0 256 328 219 0 chrX 148425186 148425378 -28548762 + L2 LINE L2 3037 3270 -2 231 200 243 0 chrX 148426077 148426147 -28547993 - MIR SINE MIR -127 135 49 250 369 35 0 chrX 148426173 148426314 -28547826 - MIR3 SINE MIR -33 175 30 897 193 17 6 chrX 148428036 148428217 -28545923 + MER5A DNA MER1_type 1 183 -6 345 24 0 0 chrX 148430028 148430070 -28544070 + (TG)n Simple_repeat Simple_repeat 2 43 0 1178 146 11 0 chrX 148431323 148431508 -28542632 + L1MD2 LINE L1 6163 6349 -10 2858 3 0 0 chrX 148431720 148432023 -28542117 - AluYa5 SINE Alu -8 303 1 576 280 120 64 chrX 148432062 148432577 -28541563 - L1ME4a LINE L1 -56 6065 5522 204 97 0 0 chrX 148433395 148433426 -28540714 + (TTC)n Simple_repeat Simple_repeat 3 33 0 1048 192 51 33 chrX 148434274 148434488 -28539652 + MER20 DNA MER1_type 2 219 0 8165 13 1 0 chrX 148434516 148435913 -28538227 + L1HS LINE L1 4757 6155 0 231 88 0 0 chrX 148435915 148435949 -28538191 + (A)n Simple_repeat Simple_repeat 1 34 0 239 303 110 9 chrX 148437658 148437767 -28536373 - MIR3 SINE MIR -25 183 64 210 261 31 31 chrX 148437757 148437822 -28536318 + MIR3 SINE MIR 93 157 -51 * 904 158 42 70 chrX 148437879 148437942 -28536198 - MER106A DNA MER1_type -1 235 172 2249 137 27 0 chrX 148437942 148438277 -28535863 - MER2 DNA MER2_type 0 344 1 904 158 42 70 chrX 148438277 148438454 -28535686 - MER106A DNA MER1_type -64 172 2 714 174 118 12 chrX 148439198 148439359 -28534781 - MER5B DNA MER1_type 0 178 1 267 256 0 0 chrX 148440709 148440799 -28533341 + (TGG)n Simple_repeat Simple_repeat 3 92 0 283 250 0 34 chrX 148441189 148441277 -28532863 + GA-rich Low_complexity Low_complexity 1 85 0 187 374 119 22 chrX 148442337 148442741 -28531399 + L2 LINE L2 2458 2900 -414 2305 143 60 3 chrX 148442866 148443252 -28530888 - L1MB2 LINE L1 0 6171 5764 183 309 92 122 chrX 148443256 148443560 -28530580 + L2 LINE L2 2978 3272 0 385 272 123 0 chrX 148444143 148444257 -28529883 - MIR3 SINE MIR -24 184 57 247 253 46 0 chrX 148445102 148445189 -28528951 + L1MC4 LINE L1 6620 6710 -1332 550 266 89 52 chrX 148447283 148447627 -28526513 + LTR18B LTR ERVL 1 614 0 1477 159 4 21 chrX 148449939 148450178 -28523962 - MER46A DNA MER2_type -1 235 1 183 162 0 0 chrX 148452181 148452218 -28521922 + (CA)n Simple_repeat Simple_repeat 1 37 0 745 288 20 32 chrX 148452951 148453201 -28520939 + MIR SINE MIR 16 262 0 309 26 0 0 chrX 148453838 148453876 -28520264 + (TG)n Simple_repeat Simple_repeat 2 39 0 265 194 32 16 chrX 148454205 148454267 -28519873 - MIR SINE MIR -110 152 90 312 294 84 17 chrX 148454569 148454688 -28519452 - MIR3 SINE MIR -52 156 30 315 71 0 0 chrX 148456476 148456518 -28517622 + (TG)n Simple_repeat Simple_repeat 2 43 0 1045 242 75 20 chrX 148456530 148456836 -28517304 - MER46C DNA MER2_type -11 327 5 469 311 62 62 chrX 148458507 148458861 -28515279 + L3 LINE CR1 1188 1541 -36 2328 81 67 26 chrX 148458862 148459207 -28514933 + MER83B LTR ERV1 1 359 -19 2394 224 97 9 chrX 148460684 148461241 -28512899 + MLT1E2 LTR MaLR 21 626 0 498 302 69 5 chrX 148461798 148461987 -28512153 + MIR SINE MIR 7 207 -55 457 242 201 7 chrX 148462002 148462151 -28511989 - MER5A DNA MER1_type -3 186 9 412 311 0 23 chrX 148462624 148462756 -28511384 - MIR SINE MIR -21 241 113 2259 120 0 3 chrX 148464826 148465135 -28509005 - AluSg SINE Alu -2 308 1 193 379 77 44 chrX 148465408 148465656 -28508484 + L2 LINE L2 2924 3179 -93 189 147 0 0 chrX 148467829 148467863 -28506277 + (TATG)n Simple_repeat Simple_repeat 1 34 0 236 151 0 19 chrX 148468549 148468602 -28505538 + CT-rich Low_complexity Low_complexity 3 54 0 225 0 0 0 chrX 148472262 148472287 -28501853 + (TG)n Simple_repeat Simple_repeat 2 26 0 185 167 0 0 chrX 148472583 148472613 -28501527 - MIR SINE MIR -164 98 69 264 59 0 0 chrX 148472851 148472885 -28501255 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 542 259 29 35 chrX 148472885 148473049 -28501091 - MIR SINE MIR -10 252 88 200 339 0 0 chrX 148473243 148473305 -28500835 - MIR3 SINE MIR 0 208 147 191 256 128 35 chrX 148473620 148473706 -28500434 - MER5B DNA MER1_type -84 94 1 22 0 0 0 chrX 148473886 148473908 -28500232 + AT_rich Low_complexity Low_complexity 1 22 0 1906 277 27 26 chrX 148473962 148474871 -28499269 + L2 LINE L2 2405 3313 0 306 294 18 18 chrX 148475168 148475277 -28498863 - MIR SINE MIR -135 127 19 313 358 54 0 chrX 148475545 148475693 -28498447 - MIR3 SINE MIR -21 187 32 2446 81 0 3 chrX 148476405 148476715 -28497425 - AluSx SINE Alu -3 309 1 255 204 0 0 chrX 148478780 148478829 -28495311 + MIR SINE MIR 101 149 -113 272 354 8 8 chrX 148480194 148480321 -28493819 + GA-rich Low_complexity Low_complexity 2 128 0 526 280 120 25 chrX 148481610 148481810 -28492330 - MIR SINE MIR -11 251 33 819 258 12 35 chrX 148481859 148482100 -28492040 - MIR SINE MIR -6 256 21 187 254 63 32 chrX 148482299 148482362 -28491778 - L2 LINE L2 0 3313 3249 1681 153 49 6 chrX 148486113 148486440 -28487700 + L1MB8 LINE L1 5836 6176 -2 314 199 149 35 chrX 148486882 148487023 -28487117 - MER103 DNA DNA -2 164 8 336 83 0 0 chrX 148487036 148487084 -28487056 + (CA)n Simple_repeat Simple_repeat 2 49 0 38 22 0 0 chrX 148488118 148488163 -28485977 + AT_rich Low_complexity Low_complexity 1 45 0 243 0 0 0 chrX 148489784 148489811 -28484329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 516 303 59 35 chrX 148490747 148491001 -28483139 - L2 LINE L2 0 3313 3054 2579 45 0 3 chrX 148491178 148491487 -28482653 + AluY SINE Alu 1 308 -3 237 306 165 36 chrX 148493421 148493754 -28480386 + L2 LINE L2 2897 3272 0 297 200 0 0 chrX 148494978 148495043 -28479097 + L1 LINE L1 4789 4853 -1293 1463 130 30 26 chrX 148495045 148495314 -28478826 - L1PA15 LINE L1 -1 6164 5895 1420 98 5 5 chrX 148495314 148495509 -28478631 + L1PA8A LINE L1 5911 6113 -18 2670 133 2 0 chrX 148495527 148495942 -28478198 - L1PA15 LINE L1 -253 5912 5497 268 250 107 18 chrX 148496050 148496162 -28477978 + MER103 DNA DNA 8 129 -37 222 91 0 0 chrX 148496557 148496590 -28477550 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 0 0 0 chrX 148496590 148496614 -28477526 + AT_rich Low_complexity Low_complexity 1 24 0 240 378 0 0 chrX 148496736 148496818 -28477322 - MIR SINE MIR -82 126 45 414 368 23 0 chrX 148497243 148497376 -28476764 + L2 LINE L2 3137 3272 0 231 88 0 0 chrX 148497598 148497632 -28476508 + (TC)n Simple_repeat Simple_repeat 2 35 0 188 267 22 0 chrX 148497994 148498039 -28476101 - MER5B DNA MER1_type -49 129 84 1387 135 29 8 chrX 148498678 148498923 -28475217 - MER58B DNA MER1_type 0 341 92 7237 89 5 19 chrX 148499195 148500267 -28473873 + MER11C LTR ERVK 1 1057 -14 5407 89 34 11 chrX 148500530 148501292 -28472848 - LTR17 LTR ERV1 0 780 1 957 89 7 7 chrX 148501294 148501429 -28472711 - HERV17 LTR ERV1 -3 8623 8489 422 182 113 63 chrX 148506446 148506615 -28467525 + MIR3 SINE MIR 11 181 -62 203 170 21 0 chrX 148506914 148506961 -28467179 + CT-rich Low_complexity Low_complexity 2 49 0 180 111 0 0 chrX 148507423 148507450 -28466690 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 21 0 0 0 chrX 148507718 148507739 -28466401 + AT_rich Low_complexity Low_complexity 1 21 0 202 328 45 0 chrX 148508842 148508909 -28465231 + L2 LINE L2 3244 3313 0 187 365 74 29 chrX 148509173 148509417 -28464723 + L2 LINE L2 2554 2808 -506 296 330 11 0 chrX 148510208 148510302 -28463838 + MIR3 SINE MIR 108 202 -6 746 98 0 8 chrX 148510341 148510464 -28463676 + (TA)n Simple_repeat Simple_repeat 1 122 0 194 91 30 0 chrX 148512052 148512085 -28462055 + CT-rich Low_complexity Low_complexity 3 36 0 234 81 0 0 chrX 148512087 148512124 -28462016 + (CA)n Simple_repeat Simple_repeat 2 38 0 816 224 57 0 chrX 148512431 148512641 -28461499 + L1PBa LINE L1 330 551 -6312 1353 148 0 49 chrX 148512701 148512985 -28461155 - L1MA4A LINE L1 -447 5856 5587 181 290 0 43 chrX 148515065 148515134 -28459006 - MER5A DNA MER1_type -4 185 120 493 289 14 66 chrX 148517294 148517505 -28456635 - MIR SINE MIR -45 217 18 574 265 109 52 chrX 148517737 148517967 -28456173 - MIR SINE MIR -19 243 1 21 0 0 0 chrX 148518239 148518260 -28455880 + AT_rich Low_complexity Low_complexity 1 21 0 214 261 109 33 chrX 148518893 148518985 -28455155 + MIR SINE MIR 157 255 -7 3081 169 60 0 chrX 148519095 148519657 -28454483 + L1MB5 LINE L1 5579 6174 0 23 0 0 0 chrX 148522632 148522655 -28451485 + AT_rich Low_complexity Low_complexity 1 23 0 192 344 104 52 chrX 148522734 148523022 -28451118 + L2 LINE L2 2914 3216 -56 349 300 10 10 chrX 148523037 148523137 -28451003 - MIR3 SINE MIR -52 156 57 252 0 0 0 chrX 148523675 148523703 -28450437 + (TG)n Simple_repeat Simple_repeat 2 29 0 452 333 14 0 chrX 148523842 148523989 -28450151 - MIR SINE MIR -73 189 41 262 293 63 46 chrX 148524098 148524272 -28449868 + MIR SINE MIR 34 210 -52 295 298 91 35 chrX 148525663 148525861 -28448279 + MIR SINE MIR 8 216 -46 278 229 86 14 chrX 148526483 148526553 -28447587 - MER91A DNA MER1_type 0 196 122 325 237 169 81 chrX 148526637 148526873 -28447267 - L3 LINE CR1 -21 1556 1300 1383 217 54 30 chrX 148527818 148528150 -28445990 + MER58B DNA MER1_type 2 341 0 368 224 0 24 chrX 148528369 148528454 -28445686 + MIR SINE MIR 87 169 -93 495 312 35 23 chrX 148529204 148529377 -28444763 - L2 LINE L2 -639 2675 2501 2907 204 21 33 chrX 148530402 148530971 -28443169 - REP3 LTR ERV 0 562 1 187 245 160 21 chrX 148531340 148531434 -28442706 + MIR SINE MIR 16 122 -86 338 272 8 8 chrX 148531871 148531996 -28442144 + L1MB7 LINE L1 3865 3989 -2157 423 311 93 26 chrX 148533134 148533327 -28440813 + MIR SINE MIR 6 211 -51 348 272 34 48 chrX 148533951 148534098 -28440042 - MIR SINE MIR 0 262 118 569 230 0 7 chrX 148534099 148534238 -28439902 + L1MB7 LINE L1 5186 5323 -823 543 104 0 104 chrX 148534662 148534705 -28439435 + L1MB7 LINE L1 5324 5370 -814 1408 167 93 68 chrX 148534705 148535059 -28439081 + MLT1A1 LTR MaLR 3 365 0 543 104 0 104 chrX 148535059 148535121 -28439019 + L1MB7 LINE L1 5370 5418 -766 * 2466 169 29 14 chrX 148535091 148535576 -28438564 + L1MB7 LINE L1 5693 6184 0 253 232 30 101 chrX 148535578 148535677 -28438463 - MIR SINE MIR -170 92 1 1610 190 61 71 chrX 148537636 148538030 -28436110 + MLT1B LTR MaLR 1 390 0 1515 195 22 30 chrX 148538273 148538643 -28435497 - L1MB7 LINE L1 0 6184 5818 1579 170 15 114 chrX 148538661 148539066 -28435074 + MLT1A1 LTR MaLR 1 365 0 453 259 94 56 chrX 148540260 148540656 -28433484 + LTR16A1 LTR ERVL 1 445 -12 190 250 133 17 chrX 148540747 148540807 -28433333 + MIR3 SINE MIR 119 185 -23 21 0 0 0 chrX 148541414 148541435 -28432705 + AT_rich Low_complexity Low_complexity 1 21 0 598 262 24 12 chrX 148546076 148546240 -28427900 - MER103 DNA DNA 0 166 1 2007 127 3 3 chrX 148546412 148546728 -28427412 - L1P LINE L1 -1235 4911 4596 1213 172 24 0 chrX 148546728 148546937 -28427203 - MER7A DNA MER2_type -134 212 1 731 273 0 5 chrX 148547754 148547941 -28426199 + L2 LINE L2 2183 2368 -946 443 136 45 23 chrX 148547945 148548033 -28426107 - L1PA16 LINE L1 0 6166 6077 573 277 87 29 chrX 148548037 148548243 -28425897 + MIR SINE MIR 45 262 0 1447 264 65 62 chrX 148548460 148549305 -28424835 - L2 LINE L2 -5 3308 2478 2744 198 4 2 chrX 148549317 148549822 -28424318 + L1P3 LINE L1 3 508 -5367 21956 167 6 20 chrX 148549822 148554002 -28420138 + L1P3 LINE L1 771 4911 -1550 903 149 0 68 chrX 148554002 148554163 -28419977 + MER7A DNA MER2_type 179 328 -9 304 219 55 0 chrX 148554260 148554333 -28419807 + Charlie8 DNA MER1_type 2341 2417 0 402 295 121 16 chrX 148555199 148555389 -28418751 - L3 LINE CR1 -16 1561 1352 326 244 44 89 chrX 148555449 148555629 -28418511 + MIR SINE MIR 86 257 -5 262 321 62 40 chrX 148555658 148555882 -28418258 - L3 LINE CR1 -263 1314 1086 301 313 122 0 chrX 148558663 148558778 -28415362 - MIR3 SINE MIR -25 183 55 595 281 133 5 chrX 148559004 148559200 -28414940 - MIR SINE MIR -37 225 5 723 215 96 17 chrX 148559200 148559377 -28414763 - MER46C DNA MER2_type 0 338 148 310 267 30 40 chrX 148560696 148560797 -28413343 - MIR SINE MIR -91 171 72 23 0 0 0 chrX 148561150 148561173 -28412967 + AT_rich Low_complexity Low_complexity 1 23 0 1450 241 11 10 chrX 148561356 148561885 -28412255 - MLT2B1 LTR ERVL 0 520 83 1965 147 0 3 chrX 148561886 148562179 -28411961 - THE1B LTR MaLR 0 364 73 10112 98 37 36 chrX 148562179 148563664 -28410476 - THE1B-int LTR MaLR -94 1486 1 2253 141 6 3 chrX 148563664 148563997 -28410143 - THE1B LTR MaLR 0 364 31 8417 9 5 0 chrX 148563997 148564918 -28409222 + L1PA2 LINE L1 5227 6151 -4 27 0 0 0 chrX 148564924 148564951 -28409189 + AT_rich Low_complexity Low_complexity 1 27 0 271 64 0 0 chrX 148564971 148565010 -28409130 - THE1A LTR MaLR -321 34 1 514 157 0 0 chrX 148565010 148565093 -28409047 - MLT2B1 LTR ERVL -434 86 4 390 295 58 50 chrX 148565125 148565383 -28408757 - L1ME LINE L1 -488 5633 5374 218 288 76 15 chrX 148565641 148565707 -28408433 + MIR SINE MIR 46 115 -93 473 223 9 0 chrX 148565761 148565873 -28408267 - MER53 DNA DNA 0 189 77 295 296 0 56 chrX 148565934 148566042 -28408098 + MIR SINE MIR 104 205 -57 509 267 43 19 chrX 148567551 148567712 -28406428 + MIR3 SINE MIR 43 207 -1 1339 181 103 31 chrX 148569009 148569434 -28404706 - Charlie4a DNA MER1_type -9 499 44 593 295 0 12 chrX 148569584 148569750 -28404390 + MIR3 SINE MIR 45 208 0 561 281 13 0 chrX 148569803 148569954 -28404186 + MIR SINE MIR 33 183 -40 192 179 0 0 chrX 148570267 148570306 -28403834 + CT-rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chrX 148570571 148570594 -28403546 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chrX 148570664 148570684 -28403456 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 638 271 73 6 chrX 148572238 148572415 -28401725 + MER91B DNA MER1_type 2 190 0 444 302 24 16 chrX 148572498 148572624 -28401516 - MIR3 SINE MIR -77 131 5 460 340 77 46 chrX 148572928 148573467 -28400673 + L2 LINE L2 2717 3267 -5 508 362 111 24 chrX 148573507 148574016 -28400124 - L2 LINE L2 -5 3267 2720 210 37 0 0 chrX 148574164 148574191 -28399949 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 449 311 47 7 chrX 148575194 148575342 -28398798 - MIR SINE MIR -56 206 53 652 94 47 0 chrX 148575623 148575750 -28398390 + GA-rich Low_complexity Low_complexity 4 136 0 206 333 15 0 chrX 148576181 148576247 -28397893 - MIR SINE MIR -98 110 44 243 308 45 53 chrX 148576495 148576628 -28397512 + MIR SINE MIR 2 133 -129 2244 245 20 18 chrX 148576628 148577476 -28396664 + L1M1 LINE L1 1279 2203 -4179 2919 231 25 12 chrX 148577497 148578457 -28395683 + L1M1 LINE L1 2569 3540 -2842 1825 166 20 3 chrX 148578462 148578811 -28395329 + L1MB2 LINE L1 1 355 -6508 * 5892 221 13 6 chrX 148578798 148580299 -28393841 + L1 LINE L1 2380 3890 -2256 1602 198 6 9 chrX 148580300 148580634 -28393506 + L1MB2 LINE L1 409 741 -5535 * 6532 202 20 54 chrX 148580632 148582629 -28391511 + L1MB2 LINE L1 1227 3174 -3688 1621 136 4 0 chrX 148582642 148582893 -28391247 + L1MB2 LINE L1 4688 4939 -1923 25062 59 3 3 chrX 148582923 148587118 -28387022 - L1PA5 LINE L1 -8 6146 1953 3267 91 0 0 chrX 148587113 148587584 -28386556 + L1PA10 LINE L1 1336 1806 -4340 * 6734 132 14 2 chrX 148587584 148588586 -28385554 + L1PA10 LINE L1 4216 5268 -900 500 0 0 16 chrX 148588586 148588647 -28385493 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 6734 132 14 2 chrX 148588647 148589555 -28384585 + L1PA10 LINE L1 5268 6163 -5 4282 166 15 51 chrX 148589579 148590566 -28383574 + L1MB2 LINE L1 5936 6887 0 229 366 0 10 chrX 148590568 148590669 -28383471 + MIR SINE MIR 140 239 -23 2254 237 32 23 chrX 148590769 148591339 -28382801 + MER90 LTR ERV1 1 575 0 556 303 30 63 chrX 148591558 148591829 -28382311 + MIR SINE MIR 1 262 0 584 231 45 28 chrX 148592760 148592940 -28381200 + MIR SINE MIR 21 200 -56 281 121 52 17 chrX 148593921 148593979 -28380161 + MER90 LTR ERV1 333 392 -222 389 273 47 8 chrX 148594027 148594155 -28379985 - L1ME2 LINE L1 -214 5950 5818 586 292 58 12 chrX 148594209 148594449 -28379691 - L1ME2 LINE L1 -360 5810 5560 403 262 57 0 chrX 148594462 148594603 -28379537 - LTR16B LTR ERVL -17 447 299 1695 269 40 30 chrX 148594625 148595719 -28378421 - L1ME2 LINE L1 -593 5571 4456 40863 32 21 1 chrX 148595815 148601834 -28372306 + L1HS LINE L1 13 6154 -1 4440 187 54 36 chrX 148601841 148602643 -28371497 - Charlie1 DNA MER1_type -45 2716 1883 2354 96 0 3 chrX 148602643 148602956 -28371184 - AluSx SINE Alu 0 312 1 4440 187 54 36 chrX 148602956 148603332 -28370808 - Charlie1 DNA MER1_type -878 1883 1516 267 263 0 0 chrX 148603855 148603931 -28370209 - MIR SINE MIR 0 262 187 1337 195 68 19 chrX 148604889 148605212 -28368928 + Charlie1 DNA MER1_type 1488 1826 -935 976 226 56 44 chrX 148605502 148605754 -28368386 - MIR SINE MIR -5 257 3 8685 129 30 50 chrX 148605804 148606047 -28368093 + THE1C-int LTR MaLR 54 300 -1280 6458 51 2 0 chrX 148606047 148606848 -28367292 + L1PA5 LINE L1 5348 6150 -4 8685 129 30 50 chrX 148606848 148608163 -28365977 + THE1C-int LTR MaLR 300 1580 0 1670 133 57 88 chrX 148608165 148608550 -28365590 + THE1C LTR MaLR 3 375 0 222 283 53 105 chrX 148609008 148609255 -28364885 + L2 LINE L2 1535 1768 -1546 2225 183 31 2 chrX 148609263 148609683 -28364457 - MSTB1 LTR MaLR 0 432 1 298 338 42 59 chrX 148610011 148610298 -28363842 + L2 LINE L2 1220 1501 -1813 7012 90 18 20 chrX 148610315 148611374 -28362766 + MER11C LTR ERVK 1 1057 -14 2804 270 57 11 chrX 148611551 148612593 -28361547 + L1M4 LINE L1 34 1122 -5274 272 80 0 20 chrX 148612594 148612644 -28361496 - L1MA2 LINE L1 -10 6294 6246 * 17020 181 18 8 chrX 148612638 148617807 -28356333 - L1PA13 LINE L1 -4 6810 1493 4974 200 4 17 chrX 148617804 148618730 -28355410 - L1PA13 LINE L1 -5873 914 1 * 1208 142 55 36 chrX 148618741 148618994 -28355146 - L1MA2 LINE L1 -45 6259 6002 3590 244 77 59 chrX 148619027 148619259 -28354881 + L1M4 LINE L1 1114 1340 -4907 2272 128 35 14 chrX 148619259 148619626 -28354514 + THE1C LTR MaLR 1 375 0 9821 100 61 38 chrX 148619626 148621171 -28352969 + THE1C-int LTR MaLR 1 1580 0 2275 108 71 3 chrX 148621171 148621522 -28352618 + THE1C LTR MaLR 1 375 0 3590 244 77 59 chrX 148621522 148621790 -28352350 + L1M4 LINE L1 1340 1602 -4645 1411 225 12 40 chrX 148621790 148622194 -28351946 - MLT2C1 LTR ERVL -2 395 3 3590 244 77 59 chrX 148622194 148622739 -28351401 + L1M4 LINE L1 1602 2136 -4111 2501 57 0 3 chrX 148622739 148623036 -28351104 + AluY SINE Alu 1 296 -15 3590 244 77 59 chrX 148623036 148624001 -28350139 + L1M4 LINE L1 2136 3082 -3165 1581 104 0 0 chrX 148624001 148624223 -28349917 + L1PA16 LINE L1 5936 6157 -9 3590 244 77 59 chrX 148624223 148624311 -28349829 + L1M4 LINE L1 3082 3167 -3080 2501 41 0 3 chrX 148624311 148624606 -28349534 - AluY SINE Alu -17 294 1 3590 244 77 59 chrX 148624606 148626894 -28347246 + L1M4 LINE L1 3167 5558 -689 858 218 28 0 chrX 148626964 148627180 -28346960 - L1M4 LINE L1 -1982 4164 3943 270 152 0 185 chrX 148627181 148627273 -28346867 + MLT1A2 LTR MaLR 1 61 -313 935 284 85 86 chrX 148627273 148628169 -28345971 + L1PA12 LINE L1 21 1450 -6131 2917 165 38 9 chrX 148628215 148628773 -28345367 - LTR1B LTR ERV1 -252 574 1 5830 250 35 27 chrX 148628849 148629978 -28344162 + L1PA12 LINE L1 1687 2806 -4778 2381 114 0 0 chrX 148629978 148630284 -28343856 - AluSp SINE Alu -7 306 1 5830 250 35 27 chrX 148630284 148631069 -28343071 + L1PA12 LINE L1 2806 3584 -4000 1836 121 103 0 chrX 148631069 148631342 -28342798 + AluSx SINE Alu 1 301 -11 5830 250 35 27 chrX 148631342 148632552 -28341588 + L1PA12 LINE L1 3584 4833 -2751 2078 169 56 75 chrX 148632555 148633076 -28341064 - MER52A LTR ERV1 -858 897 387 690 190 30 108 chrX 148633066 148633298 -28340842 - MER52A LTR ERV1 -1541 214 1 * 31 0 0 0 chrX 148633334 148633365 -28340775 + AT_rich Low_complexity Low_complexity 1 31 0 270 0 0 0 chrX 148633528 148633558 -28340582 + (T)n Simple_repeat Simple_repeat 1 30 0 365 351 40 40 chrX 148633657 148633859 -28340281 + L2 LINE L2 3071 3272 0 250 340 20 20 chrX 148634882 148634982 -28339158 - MIR SINE MIR -15 247 148 431 226 0 7 chrX 148635002 148635139 -28339001 + L1M4 LINE L1 3841 3976 -2170 3078 148 49 20 chrX 148635139 148635752 -28338388 + L1MC1 LINE L1 5703 6333 0 249 319 102 25 chrX 148636461 148636618 -28337522 - MIR3 SINE MIR -22 186 18 237 271 0 97 chrX 148636915 148637059 -28337081 + L2 LINE L2 2277 2406 -908 986 259 117 49 chrX 148637148 148637577 -28336563 - MLT1G1 LTR MaLR -66 529 72 264 59 0 0 chrX 148637997 148638031 -28336109 + (CA)n Simple_repeat Simple_repeat 2 35 0 482 295 30 24 chrX 148638381 148638547 -28335593 + L3 LINE CR1 1039 1205 -372 189 314 14 14 chrX 148639061 148639131 -28335009 + MIR3 SINE MIR 136 205 -3 207 186 0 0 chrX 148640599 148640642 -28333498 + GA-rich Low_complexity Low_complexity 3 45 0 922 264 62 38 chrX 148640882 148641303 -28332837 + MLT1J LTR MaLR 2 432 -79 1297 250 12 14 chrX 148642354 148642698 -28331442 - MLT1A1 LTR MaLR -11 354 12 1759 251 65 8 chrX 148642899 148643392 -28330748 - LTR33 LTR ERVL 0 521 1 374 243 21 129 chrX 148643394 148643674 -28330466 - MLT1J LTR MaLR -261 250 1 2233 195 0 24 chrX 148644029 148644532 -28329608 + L1MA9 LINE L1 3640 4130 -2016 * 3937 156 42 61 chrX 148644515 148644991 -28329149 + L1MA9 LINE L1 4812 5296 -1016 243 0 0 0 chrX 148644991 148645018 -28329122 + (CA)n Simple_repeat Simple_repeat 2 28 0 3937 156 42 61 chrX 148645018 148645902 -28328238 + L1MA9 LINE L1 5296 6153 -159 737 248 62 30 chrX 148646843 148647103 -28327037 - MIR SINE MIR 0 262 3 182 129 129 97 chrX 148648117 148648179 -28325961 - MIR SINE MIR -60 148 85 423 0 0 0 chrX 148648789 148648836 -28325304 + (TG)n Simple_repeat Simple_repeat 2 48 0 182 289 72 21 chrX 148651336 148651433 -28322707 - L2 LINE L2 -238 3034 2933 1915 170 82 3 chrX 148651436 148651800 -28322340 - MSTB LTR MaLR 0 426 34 26 30 0 0 chrX 148652200 148652233 -28321907 + AT_rich Low_complexity Low_complexity 1 33 0 297 301 59 103 chrX 148652301 148652573 -28321567 - L2 LINE L2 -3 3269 3010 2483 164 17 7 chrX 148653543 148653957 -28320183 - MER47B DNA MER2_type 0 418 1 271 272 78 29 chrX 148653964 148654067 -28320073 - MIR SINE MIR -61 201 94 321 239 32 25 chrX 148654120 148654249 -28319891 + L1ME3A LINE L1 5970 6099 -71 1707 204 60 13 chrX 148654967 148655432 -28318708 + LTR54B LTR ERV1 10 496 -2 212 346 20 10 chrX 148655441 148655542 -28318598 - MIR SINE MIR -112 150 49 566 266 47 18 chrX 148655698 148655867 -28318273 + MIR SINE MIR 13 186 -76 1902 170 3 38 chrX 148655872 148656242 -28317898 - MLT1A1 LTR MaLR -6 359 3 257 297 51 34 chrX 148656364 148656482 -28317658 - L2 LINE L2 -182 3090 2971 1688 65 0 0 chrX 148656669 148656883 -28317257 - L1PA5 LINE L1 -2 6152 5939 412 322 14 27 chrX 148659790 148659936 -28314204 - MIR3 SINE MIR -50 158 15 235 338 0 0 chrX 148660239 148660316 -28313824 + MIR SINE MIR 114 190 -72 206 121 0 0 chrX 148661520 148661553 -28312587 + (CA)n Simple_repeat Simple_repeat 2 34 0 2305 161 38 38 chrX 148661555 148662001 -28312139 + MLT2B1 LTR ERVL 1 446 -74 530 183 8 0 chrX 148662009 148662129 -28312011 + (CA)n Simple_repeat Simple_repeat 2 122 0 448 59 29 0 chrX 148662180 148662248 -28311892 + (TA)n Simple_repeat Simple_repeat 2 71 0 378 280 62 30 chrX 148662259 148662519 -28311621 - MER110A LTR ERV1 -27 464 195 377 209 35 0 chrX 148662619 148662705 -28311435 - MER110A LTR ERV1 -298 170 82 312 389 26 43 chrX 148662756 148662990 -28311150 + L1MD2 LINE L1 3 232 -6308 304 184 0 149 chrX 148663202 148663289 -28310851 - LTR8A LTR ERV1 0 727 654 5767 213 23 4 chrX 148663297 148665469 -28308671 - L1PA16 LINE L1 -3 6163 3979 757 191 49 52 chrX 148665471 148665759 -28308381 + pTR5 LTR ERV1 742 1028 -1410 4800 103 92 33 chrX 148665978 148666758 -28307382 + LTR12 LTR ERV1 1 826 0 2659 219 16 14 chrX 148666758 148667492 -28306648 - L1 LINE L1 -2167 3979 3244 6157 80 19 11 chrX 148667501 148668575 -28305565 - L1PA8A LINE L1 -8 6123 5042 8731 138 13 3 chrX 148668514 148669936 -28304204 - L1PA8A LINE L1 -2400 3746 2311 1467 252 25 19 chrX 148669962 148670443 -28303697 - L1PA16 LINE L1 -3340 2806 2323 2042 194 45 110 chrX 148670445 148671126 -28303014 - LTR8A LTR ERV1 -61 666 30 857 250 32 39 chrX 148671174 148671458 -28302682 + L1MD2 LINE L1 1527 1808 -4732 1097 307 133 7 chrX 148671458 148671917 -28302223 + REP3 LTR ERV 2 518 -44 1561 238 83 46 chrX 148671978 148672307 -28301833 + L1MD2 LINE L1 1803 2118 -4422 1712 190 3 0 chrX 148672307 148672597 -28301543 + AluJo SINE Alu 2 292 -20 1561 238 83 46 chrX 148672597 148673057 -28301083 + L1MD2 LINE L1 2118 2622 -3918 803 251 88 8 chrX 148673048 148673320 -28300820 - L1MB8 LINE L1 -34 6144 5857 * 502 336 109 46 chrX 148673326 148673917 -28300223 - L2 LINE L2 -21 3251 2613 1210 227 0 0 chrX 148674527 148674743 -28299397 - MER58A DNA MER1_type -8 216 1 3494 226 35 32 chrX 148674765 148676055 -28298085 + L1MD2 LINE L1 5245 6534 -219 21 0 0 0 chrX 148676085 148676106 -28298034 + AT_rich Low_complexity Low_complexity 1 21 0 578 188 133 0 chrX 148678206 148678371 -28295769 + MER53 DNA DNA 1 187 -2 1226 261 68 35 chrX 148678679 148679077 -28295063 + MLT1F1 LTR MaLR 157 567 0 219 244 0 0 chrX 148679141 148679186 -28294954 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chrX 148679445 148679474 -28294666 + AT_rich Low_complexity Low_complexity 1 29 0 2144 242 56 18 chrX 148679535 148680093 -28294047 - MLT1G LTR MaLR -2 588 10 246 301 213 24 chrX 148680868 148681161 -28292979 - L2 LINE L2 -218 3054 2642 1183 267 36 21 chrX 148681163 148681635 -28292505 - L1M4 LINE L1 -939 5207 4729 297 287 28 0 chrX 148681656 148681764 -28292376 - L1M4 LINE L1 -1563 4583 4473 227 133 22 0 chrX 148681765 148681810 -28292330 + CT-rich Low_complexity Low_complexity 3 48 0 381 289 81 55 chrX 148681867 148682285 -28291855 - L1MEd LINE L1 -5168 951 523 330 354 102 37 chrX 148682417 148682770 -28291370 - L1MEd LINE L1 -5741 378 3 647 152 91 0 chrX 148683409 148683541 -28290599 - L1MA8 LINE L1 -27 6264 6121 2226 110 3 0 chrX 148683542 148683833 -28290307 - AluSq SINE Alu -21 292 1 4909 167 9 11 chrX 148683860 148685193 -28288947 + L1PA16 LINE L1 4723 6056 -110 274 122 0 0 chrX 148685195 148685244 -28288896 + L1PA14 LINE L1 6111 6159 -2 * 4436 141 19 14 chrX 148685241 148685974 -28288166 - L1MA8 LINE L1 -177 6114 5378 2536 191 9 28 chrX 148685979 148686440 -28287700 - MSTB2 LTR MaLR -4 453 2 446 286 85 52 chrX 148686494 148686742 -28287398 + MIR SINE MIR 3 258 -4 284 162 0 15 chrX 148686793 148686861 -28287279 + (TA)n Simple_repeat Simple_repeat 1 67 0 237 204 0 41 chrX 148687134 148687183 -28286957 + L2 LINE L2 3218 3264 -8 1072 283 83 41 chrX 148687951 148688442 -28285698 - LTR33 LTR ERVL 0 521 10 883 341 35 9 chrX 148688665 148689099 -28285041 - ERVL LTR ERVL -369 5395 4951 2676 226 85 14 chrX 148689100 148689734 -28284406 + MER76 LTR ERV 10 688 0 1226 312 63 45 chrX 148689738 148689938 -28284202 - ERVL LTR ERVL -817 4947 4752 221 0 35 0 chrX 148689938 148689967 -28284173 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1226 312 63 45 chrX 148689967 148689986 -28284154 - ERVL LTR ERVL -1012 4752 4735 13008 45 4 0 chrX 148689986 148692257 -28281883 - L1PA5 LINE L1 -9 6145 3859 1226 312 63 45 chrX 148692257 148692652 -28281488 - ERVL LTR ERVL -1029 4735 4321 1228 138 98 75 chrX 148692655 148692909 -28281231 + LTR12 LTR ERV1 1 260 -454 386 203 0 0 chrX 148692909 148692988 -28281152 + LTR30 LTR ERV1 546 624 -98 725 152 0 5 chrX 148692988 148693110 -28281030 + LTR12 LTR ERV1 479 583 -131 786 255 21 21 chrX 148693126 148693314 -28280826 - ERVL LTR ERVL -1460 4304 4117 351 0 0 0 chrX 148693396 148693435 -28280705 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 82 20 0 chrX 148693438 148693487 -28280653 - L1PB1 LINE L1 -7 6860 6811 7195 197 92 16 chrX 148693488 148695970 -28278170 - L1PB1 LINE L1 -318 6549 3850 * 17121 118 65 5 chrX 148695968 148699129 -28275011 - L1PB1 LINE L1 -3345 3517 167 257 254 105 18 chrX 148699130 148699244 -28274896 - ERVL LTR ERVL -1739 4025 3902 959 251 144 25 chrX 148699668 148699987 -28274153 - LTR18A LTR ERVL 0 357 1 43452 123 7 3 chrX 148699988 148706012 -28268128 - HERVL18 LTR ERVL 0 6047 1 990 255 145 22 chrX 148706018 148706336 -28267804 - LTR18A LTR ERVL 0 357 1 216 0 0 0 chrX 148706529 148706553 -28267587 + (TG)n Simple_repeat Simple_repeat 2 25 0 1397 284 42 26 chrX 148706554 148706984 -28267156 - LTR16A LTR ERVL -2 448 12 359 355 16 11 chrX 148707066 148707278 -28266862 - HERV16 LTR ERVL -69 5383 4754 309 348 0 0 chrX 148707665 148707777 -28266363 - HERV16 LTR ERVL -1170 4594 4483 427 295 90 43 chrX 148707914 148708148 -28265992 - HERV16 LTR ERVL -1800 3964 3720 605 348 4 17 chrX 148708219 148708455 -28265685 - HERV16 LTR ERVL -2277 3487 3255 1077 299 47 21 chrX 148708488 148708873 -28265267 - HERV16 LTR ERVL -2776 2220 1826 3636 286 50 19 chrX 148709036 148710193 -28263947 - HERV16 LTR ERVL -3420 1576 384 259 215 54 43 chrX 148710271 148710364 -28263776 - HERV16 LTR ERVL -4787 209 116 929 284 47 0 chrX 148710463 148710741 -28263399 - LTR16A LTR ERVL -2 448 158 559 285 163 9 chrX 148710872 148711207 -28262933 - L2 LINE L2 -211 3061 2670 581 254 29 0 chrX 148711211 148711349 -28262791 - MER5B DNA MER1_type 0 178 37 234 264 160 24 chrX 148711242 148711367 -28262773 + MER5A DNA MER1_type 43 184 -5 * 461 191 56 136 chrX 148711907 148712039 -28262101 - MER106B DNA MER1_type 0 1059 918 1661 198 38 69 chrX 148712039 148712518 -28261622 + MLT2C2 LTR ERVL 1 464 0 461 191 56 136 chrX 148712518 148712635 -28261505 - MER106B DNA MER1_type -141 918 1 853 238 51 19 chrX 148712635 148712849 -28261291 + MIR SINE MIR 31 251 -11 220 221 132 15 chrX 148712893 148712961 -28261179 + MIR SINE MIR 6 81 -181 263 174 0 0 chrX 148713025 148713071 -28261069 + MER5B DNA MER1_type 130 175 -3 592 260 7 14 chrX 148713075 148713221 -28260919 - L2 LINE L2 -642 2672 2528 * 1030 271 54 35 chrX 148713210 148713634 -28260506 + L2 LINE L2 2825 3256 -57 368 316 107 6 chrX 148714253 148714421 -28259719 - MIR SINE MIR -11 251 67 561 229 106 48 chrX 148714780 148714968 -28259172 - MIR SINE MIR -59 203 5 240 253 38 51 chrX 148715143 148715222 -28258918 + L2 LINE L2 3193 3270 -2 2244 126 139 13 chrX 148715248 148715628 -28258512 + MSTA LTR MaLR 1 428 0 1584 194 69 26 chrX 148715802 148716152 -28257988 + MLT1A1 LTR MaLR 1 365 0 3369 178 25 41 chrX 148716498 148717233 -28256907 - L1MB1 LINE L1 0 6168 5446 767 240 23 12 chrX 148719154 148719325 -28254815 - MER45A DNA AcHobo -4 174 2 333 278 0 0 chrX 148719772 148719869 -28254271 + L1M LINE L1 5306 5402 -2406 1696 211 3 17 chrX 148719886 148720246 -28253894 + MLT1A1 LTR MaLR 10 364 -1 503 243 101 40 chrX 148720299 148720575 -28253565 + L1MC/D LINE L1 873 1165 -5231 813 222 72 0 chrX 148720576 148720783 -28253357 + L1MC/D LINE L1 3831 4052 -2163 1972 215 96 91 chrX 148720862 148721837 -28252303 - MER97b DNA MER1_type? 0 1053 71 204 67 0 0 chrX 148721837 148721867 -28252273 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1972 215 96 91 chrX 148721867 148721921 -28252219 - MER97b DNA MER1_type? -982 71 19 571 172 35 30 chrX 148724565 148724763 -28249377 + L1MC/D LINE L1 5324 5522 -2355 * 652 234 109 8 chrX 148724759 148725016 -28249124 + L1MC3 LINE L1 1094 1376 -5231 1412 249 85 12 chrX 148725018 148725656 -28248484 + L1MB7 LINE L1 3763 4446 -1700 3152 185 20 14 chrX 148725727 148726419 -28247721 + L1MB7 LINE L1 5446 6141 -43 996 186 24 20 chrX 148726427 148726674 -28247466 + L1MC3 LINE L1 1701 1948 -4478 * 5071 148 41 32 chrX 148726672 148727573 -28246567 - L1MA7 LINE L1 0 6291 5400 4778 82 15 12 chrX 148727573 148728256 -28245884 - L1PA10 LINE L1 0 6168 5484 5071 148 41 32 chrX 148728256 148728472 -28245668 - L1MA7 LINE L1 -891 5400 5188 1880 174 0 0 chrX 148728472 148728759 -28245381 - AluJo SINE Alu -24 288 2 5071 148 41 32 chrX 148728759 148729027 -28245113 - L1MA7 LINE L1 -1103 5188 4882 7847 249 34 27 chrX 148729033 148729194 -28244946 + L1MC3 LINE L1 2036 2194 -4232 2554 68 0 7 chrX 148729194 148729504 -28244636 - AluY SINE Alu -3 308 1 7847 249 34 27 chrX 148729504 148732504 -28241636 + L1MC3 LINE L1 2194 5177 -1249 311 138 17 0 chrX 148732526 148732584 -28241556 + L1MC3 LINE L1 5846 5904 -1881 * 5174 201 51 24 chrX 148732581 148734088 -28240052 + L1MC3 LINE L1 5187 5682 -744 783 184 7 0 chrX 148734082 148734234 -28239906 + L1MC3 LINE L1 7562 7714 -351 * 1052 125 183 0 chrX 148734234 148734442 -28239698 - Tigger5 DNA MER2_type 0 2323 2078 431 221 32 0 chrX 148734432 148734527 -28239613 - Tigger5 DNA MER2_type -2225 98 1 * 808 138 48 0 chrX 148734527 148734672 -28239468 + L1MC3 LINE L1 7713 7864 -201 951 123 0 0 chrX 148734672 148734802 -28239338 + AluSg/x SINE Alu 170 299 -11 862 176 62 0 chrX 148734803 148734996 -28239144 + L1MC3 LINE L1 7860 8064 -1 285 374 8 23 chrX 148735062 148735193 -28238947 - MIR SINE MIR -63 145 17 404 273 0 0 chrX 148735655 148735743 -28238397 - MIR3 SINE MIR -54 154 67 24 0 0 0 chrX 148736625 148736649 -28237491 + AT_rich Low_complexity Low_complexity 1 24 0 1651 216 68 33 chrX 148737100 148737582 -28236558 + MLT1D LTR MaLR 7 505 0 408 97 0 0 chrX 148738113 148738175 -28235965 + (CA)n Simple_repeat Simple_repeat 2 63 0 2075 99 0 11 chrX 148739334 148739649 -28234491 + AluSc SINE Alu 1 312 0 1728 190 94 8 chrX 148739783 148740146 -28233994 + MSTD LTR MaLR 1 394 -2 429 244 0 11 chrX 148740221 148740311 -28233829 + MIR SINE MIR 154 242 -20 201 229 16 16 chrX 148740984 148741045 -28233095 + (TAA)n Simple_repeat Simple_repeat 3 63 0 640 286 51 10 chrX 148741048 148741244 -28232896 - MIR SINE MIR -36 226 23 4371 138 11 4 chrX 148741965 148742683 -28231457 - L1MB2 LINE L1 -1 6170 5448 955 184 88 42 chrX 148743123 148743362 -28230778 + MIR SINE MIR 10 259 -3 221 313 139 42 chrX 148744168 148744334 -28229806 - MIR3 SINE MIR -14 194 13 814 185 26 48 chrX 148744732 148744921 -28229219 - MIR SINE MIR -10 252 68 386 358 30 0 chrX 148745000 148745165 -28228975 - MIR3 SINE MIR -14 194 25 215 311 156 0 chrX 148746269 148746359 -28227781 + MIR SINE MIR 43 146 -62 226 300 78 0 chrX 148746405 148746495 -28227645 - MIR SINE MIR -4 258 162 314 219 14 0 chrX 148746497 148746570 -28227570 + MER116 DNA Mariner 6 79 -1 343 231 13 0 chrX 148746576 148746654 -28227486 - MIR SINE MIR -118 144 66 307 312 32 48 chrX 148746649 148746774 -28227366 + MIR SINE MIR 140 262 0 * 1627 253 70 29 chrX 148746794 148747281 -28226859 - MER45C DNA AcHobo -2 951 445 1186 248 113 21 chrX 148747324 148747651 -28226489 - MER45C DNA AcHobo -596 357 1 199 367 60 13 chrX 148747654 148747804 -28226336 - L2 LINE L2 -26 3246 3090 580 252 61 8 chrX 148749202 148749333 -28224807 - MIR SINE MIR -55 153 16 2123 122 109 25 chrX 148749602 148749955 -28224185 + MSTA LTR MaLR 1 392 -36 2111 118 0 32 chrX 148749955 148750268 -28223872 - AluSx SINE Alu -9 303 1 2123 122 109 25 chrX 148750268 148750309 -28223831 + MSTA LTR MaLR 392 428 0 1210 238 80 21 chrX 148750546 148750932 -28223208 - MLT1I LTR MaLR 0 409 1 26 30 0 0 chrX 148751123 148751156 -28222984 + AT_rich Low_complexity Low_complexity 1 33 0 1503 225 3 9 chrX 148751254 148751569 -28222571 + Tigger7 DNA MER2_type 32 344 -2143 807 151 20 7 chrX 148751564 148751710 -28222430 + Tigger7 DNA MER2_type 2339 2486 -1 * 334 290 0 51 chrX 148752627 148752765 -28221375 - HAL1 LINE L1 -901 1606 1476 1593 276 50 17 chrX 148752832 148753354 -28220786 + MLT1E LTR MaLR 55 593 0 29 28 0 0 chrX 148753777 148753813 -28220327 + AT_rich Low_complexity Low_complexity 1 36 0 200 200 25 50 chrX 148753872 148753952 -28220188 + T-rich Low_complexity Low_complexity 2 79 0 1353 251 28 23 chrX 148754476 148754910 -28219230 - L1ME3A LINE L1 -32 6138 5703 1214 162 13 0 chrX 148754909 148755144 -28218996 - L1 LINE L1 -2542 3604 3367 * 3375 161 3 0 chrX 148755153 148755797 -28218343 + L1 LINE L1 4663 5308 -838 353 48 0 8 chrX 148755862 148755922 -28218218 + L1M LINE L1 5314 5364 -936 4717 160 20 33 chrX 148755945 148757688 -28216452 - L1PA15 LINE L1 -108 6057 4352 195 227 202 67 chrX 148758307 148758426 -28215714 + L2 LINE L2 3179 3313 0 2366 90 3 0 chrX 148759219 148759520 -28214620 - AluSp SINE Alu -11 302 1 894 262 81 26 chrX 148759920 148760267 -28213873 - MLT1J2 LTR MaLR -26 424 59 188 143 0 0 chrX 148762023 148762051 -28212089 + L2 LINE L2 1524 1551 -1763 315 0 0 0 chrX 148762263 148762298 -28211842 + (TTAA)n Simple_repeat Simple_repeat 4 38 0 204 257 149 0 chrX 148762300 148762374 -28211766 - L2 LINE L2 -23 3290 3206 222 91 0 0 chrX 148762964 148762997 -28211143 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 235 362 106 0 chrX 148762997 148763091 -28211049 - L2 LINE L2 -13 3300 3197 5590 202 45 14 chrX 148763197 148764576 -28209564 + Charlie1a DNA MER1_type 1 1422 -33 244 341 55 11 chrX 148764672 148764763 -28209377 + L2 LINE L2 3162 3256 -16 304 296 10 0 chrX 148766606 148766704 -28207436 + L2 LINE L2 1475 1573 -1741 508 269 82 12 chrX 148766729 148766900 -28207240 + L2 LINE L2 3128 3310 -3 265 226 11 21 chrX 148766922 148767015 -28207125 + MER103 DNA DNA 6 97 -69 554 292 7 0 chrX 148767017 148767171 -28206969 - L2 LINE L2 -705 2609 2455 237 33 0 0 chrX 148767171 148767201 -28206939 + (TG)n Simple_repeat Simple_repeat 1 30 0 563 316 56 19 chrX 148767275 148767544 -28206596 - L2 LINE L2 -428 2886 2608 289 271 65 0 chrX 148768133 148768240 -28205900 - MIR3 SINE MIR -4 204 91 209 209 0 0 chrX 148768361 148768404 -28205736 + MIR SINE MIR 111 153 -55 299 136 17 0 chrX 148769169 148769228 -28204912 + CT-rich Low_complexity Low_complexity 2 61 0 307 243 117 9 chrX 148770096 148770207 -28203933 - MIR SINE MIR -99 163 41 475 303 111 54 chrX 148770494 148770864 -28203276 + L2 LINE L2 2921 3311 -2 1410 172 39 94 chrX 148770868 148770936 -28203204 - MLT1B LTR MaLR 0 390 320 2324 91 0 7 chrX 148770936 148771223 -28202917 + AluSx SINE Alu 1 285 -27 1410 172 39 94 chrX 148771223 148771235 -28202905 - MLT1B LTR MaLR -70 320 309 240 35 0 0 chrX 148771235 148771264 -28202876 + (TG)n Simple_repeat Simple_repeat 2 30 0 1410 172 39 94 chrX 148771264 148771565 -28202575 - MLT1B LTR MaLR -81 309 29 25 0 0 0 chrX 148772574 148772599 -28201541 + AT_rich Low_complexity Low_complexity 1 25 0 1296 227 79 23 chrX 148773058 148773611 -28200529 + MLT1E1 LTR MaLR 1 593 0 247 260 12 154 chrX 148774236 148774405 -28199735 + MER5B DNA MER1_type 2 146 -32 490 180 20 10 chrX 148774721 148774821 -28199319 - LTR55 LTR ERV -16 532 432 1755 256 30 27 chrX 148774829 148775392 -28198748 - HERVL68 LTR ERVL -1429 1608 1044 1918 194 72 17 chrX 148775397 148775856 -28198284 - LTR55 LTR ERV -17 531 48 180 250 0 0 chrX 148775925 148775973 -28198167 + A-rich Low_complexity Low_complexity 3 50 0 250 184 20 0 chrX 148775991 148776040 -28198100 - LTR55 LTR ERV -498 50 1 23 0 0 0 chrX 148776342 148776365 -28197775 + AT_rich Low_complexity Low_complexity 1 23 0 2336 108 0 22 chrX 148776372 148776688 -28197452 + AluSc SINE Alu 1 309 0 605 230 27 11 chrX 148776792 148777034 -28197106 + LTR54B LTR ERV1 1 287 -211 2160 186 16 14 chrX 148777034 148777459 -28196681 - MSTB LTR MaLR 0 426 1 8255 179 38 7 chrX 148777459 148779060 -28195080 - MSTB-int LTR MaLR 0 1651 2 2064 169 92 3 chrX 148779061 148779300 -28194840 - MSTB LTR MaLR 0 426 137 3825 64 10 0 chrX 148779300 148779800 -28194340 - LTR21A LTR ERV1 0 505 1 2064 169 92 3 chrX 148779800 148779951 -28194189 - MSTB LTR MaLR -289 137 1 575 153 54 0 chrX 148779951 148780061 -28194079 + LTR54 LTR ERV1 317 432 -78 245 380 38 16 chrX 148780067 148780251 -28193889 + MIR SINE MIR 32 219 -43 4478 97 5 9 chrX 148780255 148780899 -28193241 - MER51C LTR ERV1 -19 621 1 6962 48 27 2 chrX 148781326 148782201 -28191939 + MER11D LTR ERVK 1 897 0 182 238 0 0 chrX 148788585 148788627 -28185513 - MIR SINE MIR -72 136 95 212 338 14 0 chrX 148789869 148789943 -28184197 - MIR SINE MIR -73 189 115 591 337 83 27 chrX 148790978 148791495 -28182645 + L2 LINE L2 2395 2940 -374 2185 219 18 7 chrX 148791500 148791956 -28182184 + MLT1C LTR MaLR 1 461 -6 302 307 38 23 chrX 148791993 148792183 -28181957 - L1ME4a LINE L1 -238 5883 5688 236 297 35 14 chrX 148793728 148793873 -28180267 + (CACG)n Simple_repeat Simple_repeat 2 149 0 206 256 0 47 chrX 148794074 148794160 -28179980 + G-rich Low_complexity Low_complexity 4 85 0 * 271 300 0 36 chrX 148794098 148794238 -28179902 + (CGGGG)n Simple_repeat Simple_repeat 5 139 0 204 231 0 85 chrX 148794423 148794553 -28179587 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 282 106 0 0 chrX 148794612 148794659 -28179481 + (CGGGG)n Simple_repeat Simple_repeat 5 51 0 204 276 24 47 chrX 148795278 148795405 -28178735 + (CTGGGG)n Simple_repeat Simple_repeat 6 129 0 435 175 7 22 chrX 148797818 148797955 -28176185 + C-rich Low_complexity Low_complexity 3 137 0 300 309 11 0 chrX 148798210 148798304 -28175836 - L1MEd LINE L1 -5463 656 562 275 295 81 7 chrX 148798321 148798529 -28175611 - L1ME4a LINE L1 -755 5391 5171 300 189 22 11 chrX 148798810 148798900 -28175240 + GA-rich Low_complexity Low_complexity 1 91 0 380 164 35 42 chrX 148798956 148799390 -28174750 + GA-rich Low_complexity Low_complexity 1 431 0 185 94 31 0 chrX 148799446 148799478 -28174662 + GA-rich Low_complexity Low_complexity 2 34 0 431 142 37 46 chrX 148799494 148799819 -28174321 + GA-rich Low_complexity Low_complexity 1 322 0 987 289 33 10 chrX 148799848 148800243 -28173897 - HERV16 LTR ERVL -3615 1381 978 270 158 305 0 chrX 148800426 148800508 -28173632 - MER81 DNA DNA -7 107 1 1123 346 43 20 chrX 148800608 148801256 -28172884 - HERV16 LTR ERVL -4333 663 1 288 300 83 8 chrX 148801256 148801376 -28172764 - LTR16A LTR ERVL 0 450 322 203 291 0 18 chrX 148801475 148801530 -28172610 + L2 LINE L2 3219 3272 0 222 319 17 17 chrX 148801921 148802040 -28172100 - L2 LINE L2 -189 3083 2965 295 329 65 13 chrX 148803506 148803661 -28170479 + MIR SINE MIR 21 183 -79 449 168 302 54 chrX 148803944 148803992 -28170148 - L1MDa LINE L1 -4622 1918 1883 2284 97 0 13 chrX 148803992 148804292 -28169848 - AluSx SINE Alu -14 298 3 449 168 302 54 chrX 148804292 148804392 -28169748 - L1MDa LINE L1 -4657 1883 1733 839 214 0 68 chrX 148804392 148804598 -28169542 - AluJo SINE Alu -1 311 120 4085 220 39 12 chrX 148804605 148805640 -28168500 - L1MDa LINE L1 -4829 1711 649 693 235 6 18 chrX 148805643 148805809 -28168331 - L1MDa LINE L1 -6068 472 309 224 210 0 16 chrX 148805813 148805875 -28168265 + CT-rich Low_complexity Low_complexity 3 63 0 370 193 24 24 chrX 148805875 148805958 -28168182 - L1MDa LINE L1 -6256 284 202 696 205 16 16 chrX 148805960 148806334 -28167806 + GA-rich Low_complexity Low_complexity 1 374 0 857 198 39 6 chrX 148806340 148806522 -28167618 - L1MDa LINE L1 -6340 200 13 208 214 36 18 chrX 148807893 148807949 -28166191 + L2 LINE L2 3206 3262 -10 2463 103 3 0 chrX 148809777 148810088 -28164052 + AluSp SINE Alu 1 312 -1 315 324 34 34 chrX 148810089 148810265 -28163875 - LTR16A LTR ERVL -86 364 189 452 361 18 28 chrX 148810499 148810891 -28163249 - HERVL LTR ERVL -100 5327 4788 603 141 6 129 chrX 148811039 148811209 -28162931 + MER3 DNA MER1_type 51 199 -10 322 233 33 22 chrX 148811210 148811300 -28162840 - HERVL LTR ERVL -825 4829 4739 * 1103 269 15 4 chrX 148811290 148811561 -28162579 - HERVL LTR ERVL -2004 2992 2719 516 207 0 0 chrX 148812747 148812858 -28161282 - L1MB3 LINE L1 0 6183 6073 7852 188 48 76 chrX 148812901 148814810 -28159330 - L1PA16 LINE L1 -19 6147 4185 2404 102 0 3 chrX 148814810 148815123 -28159017 - AluSx SINE Alu 0 312 1 7852 188 48 76 chrX 148815123 148815548 -28158592 - L1PA16 LINE L1 -1981 4185 3749 1090 153 0 38 chrX 148815548 148815731 -28158409 - AluSg/x SINE Alu 0 312 137 7852 188 48 76 chrX 148815731 148815931 -28158209 - L1PA16 LINE L1 -2417 3749 3545 1801 165 3 34 chrX 148815931 148816253 -28157887 - AluJb SINE Alu 0 312 1 7852 188 48 76 chrX 148816253 148816483 -28157657 - L1PA16 LINE L1 -2621 3545 3310 774 111 63 24 chrX 148816483 148816609 -28157531 + FLAM_C SINE Alu 2 132 -1 7852 188 48 76 chrX 148816609 148817678 -28156462 - L1PA16 LINE L1 -2856 3310 2262 192 250 0 0 chrX 148818532 148818580 -28155560 + MIR SINE MIR 24 71 -137 205 162 0 0 chrX 148818623 148818660 -28155480 + (TG)n Simple_repeat Simple_repeat 1 37 0 306 0 0 0 chrX 148818969 148819003 -28155137 + (TG)n Simple_repeat Simple_repeat 1 34 0 192 77 0 0 chrX 148819003 148819029 -28155111 + (GA)n Simple_repeat Simple_repeat 2 27 0 492 310 7 7 chrX 148819084 148819226 -28154914 + MIR SINE MIR 23 164 -98 505 287 108 47 chrX 148819703 148819961 -28154179 + MER46C DNA MER2_type 6 279 -59 395 252 129 19 chrX 148820871 148821026 -28153114 + MIR SINE MIR 4 175 -87 321 319 9 0 chrX 148821342 148821458 -28152682 + MIR SINE MIR 80 196 -66 1593 125 0 0 chrX 148821625 148821857 -28152283 - AluSg/x SINE Alu -3 309 78 230 259 176 12 chrX 148822306 148822391 -28151749 - MIR SINE MIR -140 122 24 2021 120 0 3 chrX 148822391 148822692 -28151448 - AluSq SINE Alu -8 305 6 252 267 13 13 chrX 148824315 148824390 -28149750 + GA-rich Low_complexity Low_complexity 1 75 0 192 254 60 0 chrX 148825045 148825112 -28149028 - L2 LINE L2 -51 3221 3151 471 155 0 0 chrX 148825442 148825526 -28148614 + GA-rich Low_complexity Low_complexity 2 85 0 277 209 15 45 chrX 148825911 148825978 -28148162 + MLT1E1 LTR MaLR 1 65 -589 1724 144 41 10 chrX 148825994 148826285 -28147855 - MER2 DNA MER2_type 0 345 46 764 198 18 0 chrX 148826286 148826450 -28147690 + MLT1E LTR MaLR 440 577 -16 330 299 66 63 chrX 148826456 148826774 -28147366 + L2 LINE L2 600 918 -2396 2322 166 36 23 chrX 148827033 148827474 -28146666 - MLT1C LTR MaLR -1 466 20 363 268 98 54 chrX 148827488 148827693 -28146447 - HAL1 LINE L1 -39 2468 2255 411 237 20 59 chrX 148827723 148827875 -28146265 - L1MC5 LINE L1 -34 7927 7782 207 0 0 0 chrX 148827992 148828015 -28146125 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1794 223 68 14 chrX 148828125 148828538 -28145602 - LTR16A LTR ERVL 0 450 16 748 272 215 16 chrX 148828721 148829033 -28145107 + L2 LINE L2 2940 3313 0 198 320 56 16 chrX 148829075 148829200 -28144940 - L2 LINE L2 -225 3047 2918 23 33 0 0 chrX 148829430 148829460 -28144680 + GC_rich Low_complexity Low_complexity 1 30 0 371 231 12 12 chrX 148829716 148829889 -28144251 + CT-rich Low_complexity Low_complexity 1 173 0 480 311 18 0 chrX 148829913 148830125 -28144015 + CT-rich Low_complexity Low_complexity 1 215 0 503 286 67 22 chrX 148832633 148832857 -28141283 - MIR SINE MIR -28 234 1 234 330 18 27 chrX 148833227 148833339 -28140801 + MIR SINE MIR 20 130 -78 273 157 0 39 chrX 148833550 148833601 -28140539 - MIR SINE MIR -67 141 93 3988 178 78 19 chrX 148834983 148835345 -28138795 - L1MB7 LINE L1 0 6184 5845 2119 98 20 10 chrX 148835345 148835641 -28138499 - AluSq SINE Alu -14 299 1 3988 178 78 19 chrX 148835641 148836144 -28137996 - L1MB7 LINE L1 -339 5845 5267 2863 183 50 20 chrX 148837347 148837883 -28136257 + MER68 LTR ERV1 3 554 -8 455 228 40 104 chrX 148839093 148839295 -28134845 + MER5A DNA MER1_type 1 189 0 362 358 78 5 chrX 148839594 148839787 -28134353 - MIR SINE MIR -28 234 28 376 273 26 124 chrX 148839817 148840011 -28134129 + MIR SINE MIR 49 223 -39 362 237 54 11 chrX 148840815 148840931 -28133209 + MIR SINE MIR 14 132 -76 223 296 42 0 chrX 148841558 148841629 -28132511 + L2 LINE L2 2223 2296 -1018 203 289 0 0 chrX 148841700 148841752 -28132388 + C-rich Low_complexity Low_complexity 2 53 0 219 273 36 0 chrX 148841942 148841997 -28132143 - L2 LINE L2 -1 3312 3256 358 319 86 47 chrX 148842051 148842433 -28131707 + L2 LINE L2 2697 3110 -162 3600 48 43 0 chrX 148842433 148842872 -28131268 + LTR22A LTR ERVK 1 458 0 358 319 86 47 chrX 148842872 148842991 -28131149 + L2 LINE L2 3110 3223 -49 1711 178 85 34 chrX 148843593 148843980 -28130160 + MLT1C LTR MaLR 1 407 -60 305 283 127 12 chrX 148844987 148845160 -28128980 - L1MC5 LINE L1 -139 7822 7630 372 257 96 78 chrX 148845341 148845559 -28128581 - L1ME4a LINE L1 -157 5964 5743 222 214 36 18 chrX 148846047 148846103 -28128037 - L2 LINE L2 -10 3262 3206 970 320 114 40 chrX 148848257 148849064 -28125076 - L3 LINE CR1 -231 1346 480 * 1322 285 134 17 chrX 148849048 148849578 -28124562 + L2 LINE L2 2230 2821 -493 597 284 44 36 chrX 148849579 148849854 -28124286 - L1MC4 LINE L1 -457 7585 7309 221 299 35 11 chrX 148849932 148850019 -28124121 + L3 LINE CR1 756 844 -733 3769 172 16 37 chrX 148850027 148850099 -28124041 + L1MB3 LINE L1 5430 5502 -681 2036 102 0 17 chrX 148850099 148850394 -28123746 + AluSc SINE Alu 1 290 -19 3769 172 16 37 chrX 148850394 148851087 -28123053 + L1MB3 LINE L1 5502 6179 -4 398 222 32 24 chrX 148851122 148851248 -28122892 - L1MC4 LINE L1 -744 7298 7172 256 145 65 0 chrX 148852421 148852483 -28121657 - Charlie5 DNA MER1_type -87 2525 2460 204 211 11 137 chrX 148853185 148853280 -28120860 - MER5C DNA MER1_type -13 311 229 316 203 0 0 chrX 148853871 148853930 -28120210 - MER5A DNA MER1_type 0 189 131 1859 131 4 0 chrX 148853939 148854213 -28119927 + AluSx SINE Alu 1 275 -37 474 284 28 13 chrX 148855053 148855229 -28118911 - L1ME LINE L1 -319 5802 5638 2461 56 3 0 chrX 148855404 148855710 -28118430 + AluSg1 SINE Alu 2 308 -1 922 238 63 33 chrX 148855992 148856460 -28117680 - L1ME4a LINE L1 -11 6110 5639 1284 174 0 21 chrX 148858384 148858625 -28115515 + AluJo SINE Alu 54 289 -23 761 298 86 68 chrX 148858729 148859293 -28114847 + L3 LINE CR1 799 1378 -199 1990 103 12 44 chrX 148859293 148859614 -28114526 + AluSx SINE Alu 1 311 -1 761 298 86 68 chrX 148859614 148859701 -28114439 + L3 LINE CR1 1378 1462 -115 864 170 71 47 chrX 148859712 148859924 -28114216 + MER20 DNA MER1_type 2 218 -1 307 194 14 28 chrX 148860253 148860325 -28113815 - L1ME4a LINE L1 -2 6119 6049 189 279 141 85 chrX 148860832 148861208 -28112932 + L2 LINE L2 2544 2940 -374 403 269 137 29 chrX 148861246 148861421 -28112719 + L2 LINE L2 3120 3313 0 477 238 25 44 chrX 148861465 148861625 -28112515 - L1ME4a LINE L1 -2049 5759 5603 289 274 14 0 chrX 148862148 148862221 -28111919 - L1ME4a LINE L1 -2202 5606 5533 276 299 93 0 chrX 148862290 148862387 -28111753 + L2 LINE L2 3208 3313 0 802 163 0 0 chrX 148862482 148862617 -28111523 - FLAM_A SINE Alu 0 142 8 257 322 17 26 chrX 148862620 148862735 -28111405 - MIR SINE MIR -116 146 33 1091 154 0 0 chrX 148864079 148864261 -28109879 - MER53 DNA DNA -2 187 6 265 324 93 28 chrX 148865123 148865305 -28108835 + MIR SINE MIR 58 251 -11 441 279 42 68 chrX 148865861 148866051 -28108089 + L2 LINE L2 3092 3276 -37 566 254 36 30 chrX 148866141 148866306 -28107834 + MIR SINE MIR 50 215 -47 290 250 140 10 chrX 148867528 148867628 -28106512 + MER117 DNA MER1_type 2 114 -83 314 252 18 63 chrX 148867713 148867824 -28106316 + MIR SINE MIR 39 144 -64 427 143 43 0 chrX 148867824 148867894 -28106246 - LTR16C LTR ERVL 0 491 419 395 35 0 52 chrX 148867896 148867954 -28106186 - MLT2B1 LTR ERVL -2 518 464 225 0 0 0 chrX 148867957 148867982 -28106158 + (CA)n Simple_repeat Simple_repeat 2 26 0 2570 143 21 7 chrX 148868011 148868443 -28105697 - Tigger2 DNA MER2_type -1 2717 2280 293 204 0 0 chrX 148868458 148868512 -28105628 - Tigger2 DNA MER2_type -2662 56 3 274 265 0 0 chrX 148868563 148868646 -28105494 - L1MC4 LINE L1 -1346 6696 6614 2054 137 16 32 chrX 148868669 148869041 -28105099 - MLT2D LTR ERVL -48 366 1 1273 286 19 19 chrX 148869041 148869179 -28104961 - LTR16C LTR ERVL -68 423 286 1984 132 30 107 chrX 148869179 148869573 -28104567 + THE1B LTR MaLR 1 364 0 1273 286 19 19 chrX 148869573 148869853 -28104287 - LTR16C LTR ERVL -204 287 5 539 350 105 38 chrX 148870080 148870346 -28103794 + L2 LINE L2 2988 3271 -1 652 306 31 31 chrX 148870626 148870887 -28103253 - MLT1I LTR MaLR -2 407 147 700 225 39 44 chrX 148871515 148871816 -28102324 + MLT1I LTR MaLR 100 549 0 1145 219 0 0 chrX 148872021 148872240 -28101900 + MER58A DNA MER1_type 1 219 -5 182 230 9 97 chrX 148872491 148872604 -28101536 - L2 LINE L2 -2761 553 451 185 223 204 29 chrX 148873480 148873583 -28100557 + L2 LINE L2 1861 1981 -1333 423 222 48 56 chrX 148874081 148874207 -28099933 + MIR3 SINE MIR 70 194 -14 326 313 74 6 chrX 148874489 148874652 -28099488 - L2 LINE L2 -839 2475 2302 373 366 160 20 chrX 148875020 148875419 -28098721 - L2 LINE L2 -12 3260 2806 701 270 72 57 chrX 148875443 148875944 -28098196 - MLT1H1 LTR MaLR -6 543 1 433 304 95 40 chrX 148875944 148876240 -28097900 - L2 LINE L2 -521 2793 2482 245 234 175 102 chrX 148876311 148876448 -28097692 - L2 LINE L2 0 3272 3126 466 314 62 16 chrX 148880926 148881120 -28093020 - MIR SINE MIR -12 250 48 330 164 0 0 chrX 148881319 148881374 -28092766 - MLT1I LTR MaLR -9 400 346 206 121 0 0 chrX 148881377 148881410 -28092730 + (A)n Simple_repeat Simple_repeat 1 33 0 363 253 24 77 chrX 148882388 148882420 -28091720 - L1ME4a LINE L1 -1 6120 6088 1111 206 105 44 chrX 148882420 148882764 -28091376 - MLT1A1 LTR MaLR 0 365 1 363 253 24 77 chrX 148882764 148882901 -28091239 - L1ME4a LINE L1 -33 6088 5960 211 261 42 42 chrX 148882968 148883087 -28091053 + L2 LINE L2 3116 3234 -79 622 113 104 9 chrX 148883088 148883203 -28090937 + MSTD LTR MaLR 271 396 0 305 281 0 0 chrX 148883206 148883270 -28090870 + L2 LINE L2 3242 3305 -8 2463 220 91 30 chrX 148883273 148883933 -28090207 + L1PA11 LINE L1 885 1584 -5997 216 0 0 0 chrX 148883964 148883988 -28090152 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2402 179 4 16 chrX 148883992 148884494 -28089646 + L1PA11 LINE L1 2403 2898 -4676 16639 151 27 12 chrX 148884494 148886630 -28087510 + L1PA11 LINE L1 3847 6029 -1583 2261 89 4 0 chrX 148886630 148886972 -28087168 + AluSp SINE Alu 1 343 0 16639 151 27 12 chrX 148886972 148888573 -28085567 + L1PA11 LINE L1 6029 7605 -7 198 143 0 0 chrX 148888601 148888636 -28085504 + (CA)n Simple_repeat Simple_repeat 1 35 0 540 233 106 36 chrX 148888797 148889157 -28084983 - L1ME4a LINE L1 -169 5952 5568 * 650 134 9 0 chrX 148889154 148889266 -28084874 + L1P LINE L1 4648 4760 -1386 214 27 0 54 chrX 148889873 148889910 -28084230 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 322 313 133 16 chrX 148889919 148890168 -28083972 - L1ME4a LINE L1 -1723 4423 4146 207 160 0 40 chrX 148890241 148890291 -28083849 + (TATAA)n Simple_repeat Simple_repeat 5 52 0 302 266 28 28 chrX 148890291 148890400 -28083740 - L1ME4a LINE L1 -244 5877 5769 566 206 12 41 chrX 148890415 148890585 -28083555 - L1MD3 LINE L1 0 7995 7831 486 128 35 0 chrX 148890585 148890671 -28083469 - Tigger5 DNA MER2_type 0 2323 2235 * 974 162 7 151 chrX 148890664 148890936 -28083204 - Tigger5 DNA MER2_type -2090 233 1 3335 186 170 12 chrX 148890936 148891849 -28082291 - L1MC4a LINE L1 -148 7660 6604 336 266 74 64 chrX 148891916 148892228 -28081912 - L1ME4a LINE L1 -2180 3966 3652 1967 187 56 29 chrX 148892237 148892687 -28081453 - MLT1C LTR MaLR 0 467 6 26 0 0 0 chrX 148892714 148892740 -28081400 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chrX 148892815 148892847 -28081293 + AT_rich Low_complexity Low_complexity 1 32 0 40189 35 25 1 chrX 148892867 148898864 -28075276 - L1PA3 LINE L1 -3 6152 9 222 297 27 0 chrX 148899990 148900064 -28074076 + MIR SINE MIR 152 227 -35 557 194 67 30 chrX 148900066 148900200 -28073940 - MIR SINE MIR -121 141 3 285 327 91 0 chrX 148900842 148900952 -28073188 - MIR3 SINE MIR -53 155 36 1419 235 34 44 chrX 148901669 148902171 -28071969 + MLT1D LTR MaLR 1 497 -8 580 188 94 29 chrX 148902272 148902442 -28071698 - LTR52 LTR ERVL -200 221 41 423 240 42 0 chrX 148902487 148902583 -28071557 + MIR SINE MIR 157 256 -6 508 269 219 36 chrX 148902625 148902959 -28071181 + L2 LINE L2 2119 2513 -801 405 274 127 0 chrX 148903077 148903234 -28070906 + MER5B DNA MER1_type 2 178 0 1397 176 0 7 chrX 148903287 148903559 -28070581 - L1M3 LINE L1 -574 5594 5325 892 149 18 48 chrX 148903563 148903751 -28070389 - AluSg/x SINE Alu 0 302 120 2803 220 56 37 chrX 148903751 148905101 -28069039 - L1M3 LINE L1 -774 5372 3915 16622 159 25 15 chrX 148905118 148909167 -28064973 - L1PB1 LINE L1 -5 6862 2723 198 0 0 0 chrX 148909167 148909189 -28064951 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 16622 159 25 15 chrX 148909189 148911939 -28062201 - L1PB1 LINE L1 -4144 2723 1 4620 226 54 55 chrX 148911948 148912913 -28061227 - L1M3 LINE L1 -2220 3926 2958 6975 62 13 29 chrX 148912913 148914601 -28059539 - SVA Other Other -683 1386 1 4620 226 54 55 chrX 148914601 148915407 -28058733 - L1M3 LINE L1 -3188 2958 2153 339 103 44 29 chrX 148915409 148915477 -28058663 - L1M3 LINE L1 -882 5452 5384 828 258 56 48 chrX 148915575 148915932 -28058208 + L1ME3A LINE L1 5731 6090 -80 350 116 75 14 chrX 148916020 148916166 -28057974 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 739 0 51 55 chrX 148916167 148916384 -28057756 + (TA)n Simple_repeat Simple_repeat 1 216 0 460 254 0 37 chrX 148916392 148916526 -28057614 - L1ME LINE L1 -528 5642 5514 605 154 197 0 chrX 148916810 148916927 -28057213 - MIR SINE MIR -73 189 50 2195 139 0 0 chrX 148916938 148917248 -28056892 - AluSx SINE Alu -2 310 1 3428 208 37 18 chrX 148917290 148917556 -28056584 - L1MB8 LINE L1 -2 6176 5917 722 75 0 0 chrX 148917556 148917650 -28056490 - L1PA5 LINE L1 -7 6147 6054 3428 208 37 18 chrX 148917650 148918793 -28055347 - L1MB8 LINE L1 -261 5917 4754 735 197 44 35 chrX 148920613 148920816 -28053324 + L1MB8 LINE L1 834 1038 -5504 2221 138 11 95 chrX 148920816 148921064 -28053076 - MSTB LTR MaLR 0 426 234 2250 101 0 14 chrX 148921064 148921361 -28052779 - AluSx SINE Alu -13 299 7 2221 138 11 95 chrX 148921361 148921577 -28052563 - MSTB LTR MaLR -192 234 1 9329 183 8 4 chrX 148921582 148923220 -28050920 - MSTB-int LTR MaLR -6 1645 2 2177 210 7 14 chrX 148923225 148923654 -28050486 - MSTB LTR MaLR 0 426 1 2647 249 58 22 chrX 148923675 148925251 -28048889 + L1MB8 LINE L1 1062 2788 -3856 1743 222 147 9 chrX 148925259 148925830 -28048310 + L1MB8 LINE L1 5120 5769 -875 1358 229 32 3 chrX 148925835 148926210 -28047930 - L1MB8 LINE L1 -2994 3152 2767 3743 195 34 33 chrX 148926215 148926429 -28047711 + L1MB8 LINE L1 5788 6000 -676 1901 204 0 3 chrX 148926429 148926791 -28047349 - MLT1A1 LTR MaLR 0 365 5 3743 195 34 33 chrX 148926791 148927464 -28046676 + L1MB8 LINE L1 6000 6676 0 1003 320 118 19 chrX 148927639 148928169 -28045971 + L2 LINE L2 2736 3308 -5 1084 202 94 33 chrX 148929286 148929635 -28044505 - MSTB LTR MaLR 0 428 1 1604 286 52 65 chrX 148929949 148930114 -28044026 + MER115 DNA AcHobo 106 272 -421 477 0 0 0 chrX 148930114 148930167 -28043973 + (CA)n Simple_repeat Simple_repeat 2 54 0 1604 286 52 65 chrX 148930167 148930575 -28043565 + MER115 DNA AcHobo 272 672 -21 1973 183 34 0 chrX 148930597 148930947 -28043193 - MLT2D LTR ERVL -52 362 1 390 246 63 20 chrX 148931363 148931527 -28042613 + MIR SINE MIR 16 183 -67 3363 209 36 99 chrX 148931596 148932340 -28041800 + L1MB7 LINE L1 3070 3859 -2785 1606 206 0 10 chrX 148932340 148932646 -28041494 + AluJo SINE Alu 3 305 -7 923 77 0 0 chrX 148932647 148932811 -28041329 + AluSg/x SINE Alu 167 330 0 3363 209 36 99 chrX 148932811 148933366 -28040774 + L1MB7 LINE L1 3858 4399 -2245 6447 117 1 30 chrX 148933374 148934684 -28039456 - L1PB1 LINE L1 -1 6150 4883 2398 204 77 23 chrX 148934686 148935371 -28038769 + L1MB7 LINE L1 4385 5106 -1538 2265 179 8 42 chrX 148935372 148935875 -28038265 + L1MB7 LINE L1 6188 6673 -9 1211 145 20 0 chrX 148936975 148937175 -28036965 - MER3 DNA MER1_type -4 205 2 513 198 8 50 chrX 148937371 148937492 -28036648 + MER5B DNA MER1_type 7 122 -56 3854 181 46 8 chrX 148937494 148938277 -28035863 - L1MC3 LINE L1 0 7785 6973 1331 210 139 47 chrX 148938298 148938765 -28035375 - LTR10B LTR ERV1 -7 540 31 3534 193 33 25 chrX 148938783 148939543 -28034597 - L1MC3 LINE L1 -807 6978 6213 2044 154 14 22 chrX 148939543 148939899 -28034241 - THE1C LTR MaLR 0 375 23 4087 157 30 9 chrX 148939952 148940706 -28033434 - L1MC3 LINE L1 -1567 6218 5449 711 218 7 7 chrX 148940728 148940905 -28033235 - L1ME2 LINE L1 -7 6159 5983 2186 202 24 8 chrX 148940927 148941418 -28032722 + L1 LINE L1 2444 2942 -3204 * 3932 188 40 38 chrX 148941417 148942791 -28031349 - L1MB3 LINE L1 -42 6210 4816 229 170 0 0 chrX 148942794 148942847 -28031293 - AluJo SINE Alu 0 300 248 1034 206 0 0 chrX 148942851 148943021 -28031119 - AluJo SINE Alu -141 171 2 3902 214 26 3 chrX 148943023 148943937 -28030203 - L1MB3 LINE L1 -1387 4828 3894 2973 204 30 63 chrX 148943934 148945628 -28028512 - L1MB3 LINE L1 -2791 3424 1850 * 3023 213 21 36 chrX 148945625 148946378 -28027762 - L1MB8 LINE L1 0 6178 5437 3453 261 76 58 chrX 148946382 148947514 -28026626 - L1MEc LINE L1 -4534 1862 753 180 77 0 0 chrX 148947514 148947540 -28026600 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 3453 261 76 58 chrX 148947540 148947615 -28026525 - L1MEc LINE L1 -5643 753 681 1864 171 0 16 chrX 148947615 148947930 -28026210 - AluJo SINE Alu 0 312 3 3453 261 76 58 chrX 148947930 148947985 -28026155 - L1MEc LINE L1 -5715 681 629 825 194 141 0 chrX 148947985 148948176 -28025964 - MER20 DNA MER1_type -1 218 1 3453 261 76 58 chrX 148948176 148948733 -28025407 - L1MEc LINE L1 -5767 629 7 260 145 13 92 chrX 148948726 148948802 -28025338 - L1MEc LINE L1 -3284 2931 2862 * 244 175 0 95 chrX 148948809 148948872 -28025268 - MLT2A2 LTR ERVL 0 453 397 22 35 0 0 chrX 148948873 148948902 -28025238 + AT_rich Low_complexity Low_complexity 1 29 0 1718 176 36 167 chrX 148948929 148949510 -28024630 - MLT2B3 LTR ERVL -49 505 1 1510 259 44 25 chrX 148949510 148950073 -28024067 - L1MEc LINE L1 -3356 2859 2286 2917 237 45 26 chrX 148950101 148951149 -28022991 - L1MEc LINE L1 -4124 2272 1205 265 215 52 74 chrX 148951514 148951649 -28022491 - L1ME4a LINE L1 -11 6110 5979 31 0 0 0 chrX 148951675 148951706 -28022434 + AT_rich Low_complexity Low_complexity 1 31 0 4639 35 0 0 chrX 148951888 148952436 -28021704 - L1PA3 LINE L1 -4 6151 5604 827 258 9 27 chrX 148952555 148952776 -28021364 - MIR SINE MIR -5 257 41 461 311 7 7 chrX 148953166 148953301 -28020839 + L2 LINE L2 3179 3313 0 271 206 73 0 chrX 148953289 148953357 -28020783 + MIR SINE MIR 182 254 -8 * 377 217 11 171 chrX 148953380 148953555 -28020585 + L2 LINE L2 3167 3313 0 206 195 53 9 chrX 148954733 148954846 -28019294 + (TA)n Simple_repeat Simple_repeat 2 119 0 262 222 32 0 chrX 148955951 148956014 -28018126 - MLT1K LTR MaLR -15 573 509 243 280 10 30 chrX 148955953 148956053 -28018087 - LTR67 LTR ERVL -15 542 445 * 257 311 14 81 chrX 148956152 148956170 -28017970 - MLT1K LTR MaLR -162 426 408 450 53 0 0 chrX 148956170 148956227 -28017913 + (CA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chrX 148956226 148956256 -28017884 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 257 311 14 81 chrX 148956227 148956385 -28017755 - MLT1K LTR MaLR -180 408 289 220 319 95 26 chrX 148956453 148956569 -28017571 + L3 LINE CR1 912 1035 -542 221 317 50 35 chrX 148956624 148956823 -28017317 + L3 LINE CR1 1153 1354 -223 249 333 10 10 chrX 148957277 148957376 -28016764 + MIR3 SINE MIR 87 185 -23 185 204 204 11 chrX 148958323 148958416 -28015724 - MIR SINE MIR -104 158 48 426 319 92 41 chrX 148958864 148959181 -28014959 - L2 LINE L2 -26 3287 2955 774 274 49 33 chrX 148959793 148960038 -28014102 - MIR SINE MIR -11 251 3 1924 177 40 3 chrX 148960208 148960558 -28013582 - MLT1A1 LTR MaLR -2 363 1 325 284 55 24 chrX 148963057 148963184 -28010956 - MIR3 SINE MIR -45 163 33 413 221 35 0 chrX 148965038 148965124 -28009016 + MER5A DNA MER1_type 16 104 -85 295 353 26 9 chrX 148965183 148965299 -28008841 + MIR SINE MIR 47 164 -98 2249 108 0 34 chrX 148965299 148965622 -28008518 + AluSx SINE Alu 1 312 0 2495 92 5 51 chrX 148965708 148966101 -28008039 - THE1C LTR MaLR 0 375 1 555 291 25 56 chrX 148967433 148967629 -28006511 + MER91B DNA MER1_type 1 190 0 26 0 0 0 chrX 148967975 148968001 -28006139 + AT_rich Low_complexity Low_complexity 1 26 0 836 241 57 88 chrX 148968090 148968442 -28005698 - MER102b DNA MER1_type 0 341 1 180 77 0 0 chrX 148969310 148969336 -28004804 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 88 0 0 chrX 148969463 148969520 -28004620 + AT_rich Low_complexity Low_complexity 1 57 0 250 220 0 0 chrX 148969529 148969588 -28004552 + MLT1K LTR MaLR 527 585 -3 645 248 19 8 chrX 148969868 148970052 -28004088 + MIR SINE MIR 38 223 -39 1086 253 0 0 chrX 148971482 148971703 -28002437 + MIR SINE MIR 2 222 -40 3279 188 0 11 chrX 148971795 148971855 -28002285 - MLT2B1 LTR ERVL 0 520 461 2297 106 0 0 chrX 148971855 148972167 -28001973 - AluSx SINE Alu 0 312 1 3279 188 0 11 chrX 148972167 148972632 -28001508 - MLT2B1 LTR ERVL -59 461 1 4880 144 21 48 chrX 148972634 148972698 -28001442 - ERVL-B1 LTR ERVL -9 5755 5691 2421 94 0 3 chrX 148972698 148973006 -28001134 + AluSp SINE Alu 1 307 -6 4880 144 21 48 chrX 148973006 148973836 -28000304 - ERVL-B1 LTR ERVL -73 5691 4885 7746 171 11 0 chrX 148973839 148975222 -27998918 + L1MA3 LINE L1 3754 5151 -995 644 170 0 0 chrX 148975222 148975322 -27998818 + MLT2B1 LTR ERVL 358 457 -63 604 0 13 13 chrX 148975322 148975399 -27998741 + (TCTA)n Simple_repeat Simple_repeat 4 80 0 6375 124 20 21 chrX 148975399 148975493 -27998647 + L1MA3 LINE L1 5175 5268 -1037 1993 140 0 0 chrX 148975493 148975795 -27998345 + AluSg SINE Alu 1 302 0 6375 124 20 21 chrX 148975795 148975815 -27998325 + L1MA3 LINE L1 5268 5287 -1018 2589 135 11 6 chrX 148975815 148976177 -27997963 - THE1B LTR MaLR 0 364 1 10864 95 31 64 chrX 148976177 148977810 -27996330 - THE1B-int LTR MaLR 0 1580 1 2806 112 0 6 chrX 148977810 148978176 -27995964 - THE1B LTR MaLR 0 364 1 6375 124 20 21 chrX 148978176 148979193 -27994947 + L1MA3 LINE L1 5284 6304 -1 10336 151 19 2 chrX 148979216 148981956 -27992184 - ERVL-B1 LTR ERVL -909 4855 2036 257 381 34 8 chrX 148981956 148982074 -27992066 - MIR3 SINE MIR -85 123 3 3894 171 22 42 chrX 148982647 148983448 -27990692 + LTR1 LTR ERV1 1 785 0 367 305 61 8 chrX 148984384 148984515 -27989625 - MIR3 SINE MIR -10 198 61 2624 153 53 6 chrX 148984566 148984814 -27989326 - LTR39 LTR ERV1 0 783 548 8177 25 1 0 chrX 148984814 148986304 -27987836 - L1PA4 LINE L1 -2 6153 4662 2624 153 53 6 chrX 148986304 148986713 -27987427 - LTR39 LTR ERV1 -235 548 1 507 260 198 6 chrX 148987340 148987517 -27986623 + MIR SINE MIR 49 259 -3 292 329 15 80 chrX 148987564 148987701 -27986439 + L2 LINE L2 3124 3251 -21 554 336 118 39 chrX 148987755 148988136 -27986004 + L3 LINE CR1 1150 1560 -17 399 259 29 29 chrX 148988901 148989040 -27985100 + MIR SINE MIR 78 216 -46 2430 84 0 0 chrX 148989040 148989349 -27984791 + AluSc SINE Alu 1 309 0 209 274 206 20 chrX 148989916 148990018 -27984122 - MIR3 SINE MIR -85 123 3 2112 164 37 127 chrX 148990722 148990827 -27983313 - MLT2B1 LTR ERVL 0 520 407 343 0 43 0 chrX 148990827 148990874 -27983266 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 2112 164 37 127 chrX 148990874 148991335 -27982805 - MLT2B1 LTR ERVL -113 407 5 335 281 77 51 chrX 148992071 148992120 -27982020 - L1M4 LINE L1 -3630 2516 2470 2294 107 0 10 chrX 148992120 148992420 -27981720 + AluSx SINE Alu 1 297 -15 335 281 77 51 chrX 148992420 148992605 -27981535 - L1M4 LINE L1 -3676 2470 2276 187 282 42 28 chrX 148993404 148993475 -27980665 - L2 LINE L2 -1 3312 3241 2265 115 0 13 chrX 148993701 148994014 -27980126 + AluSg SINE Alu 1 309 -1 414 294 49 0 chrX 148994018 148994161 -27979979 - MIR SINE MIR -56 206 57 513 128 0 0 chrX 148994275 148994353 -27979787 - L1MA9 LINE L1 0 6312 6235 43415 33 23 1 chrX 148994875 149000893 -27973247 - L1PA3 LINE L1 0 6155 3 248 322 64 47 chrX 149001551 149001722 -27972418 - HAL1 LINE L1 -27 2480 2307 2674 202 12 67 chrX 149001780 149002350 -27971790 + MLT1F LTR MaLR 4 542 0 7180 215 44 45 chrX 149002581 149003942 -27970198 - L1MC5 LINE L1 0 7961 6544 264 232 18 0 chrX 149003942 149003998 -27970142 - U7 snRNA snRNA -3 60 4 7180 215 44 45 chrX 149003998 149004728 -27969412 - L1MC5 LINE L1 -1417 6544 5815 511 247 0 40 chrX 149004728 149004878 -27969262 - L1MA10 LINE L1 -9 6325 5786 1172 242 62 22 chrX 149004891 149005218 -27968922 - L1MC5 LINE L1 -418 5748 5508 726 211 14 7 chrX 149005288 149005430 -27968710 + MIR SINE MIR 2 144 -118 3067 114 32 9 chrX 149005437 149005903 -27968237 - Tigger1 DNA MER2_type -1415 1003 527 2639 136 48 10 chrX 149005905 149006317 -27967823 - MSTA LTR MaLR 0 428 1 * 2948 160 39 4 chrX 149006317 149006793 -27967347 - Tigger1 DNA MER2_type -1891 527 35 330 118 176 0 chrX 149006807 149006875 -27967265 + L1MA9 LINE L1 6233 6312 0 280 175 0 63 chrX 149006968 149007031 -27967109 + MER96 DNA MER1_type? 1 59 -116 1318 218 52 65 chrX 149007205 149007572 -27966568 - MLT1A1 LTR MaLR -3 362 1 1333 312 110 11 chrX 149008124 149008836 -27965304 - L1ME4a LINE L1 -2 6119 5338 811 253 45 5 chrX 149008918 149009139 -27965001 - MIR SINE MIR -2 260 31 330 177 0 16 chrX 149009502 149009564 -27964576 + MIR SINE MIR 136 196 -66 866 305 37 0 chrX 149010050 149010345 -27963795 + L2 LINE L2 2453 2758 -556 344 331 0 33 chrX 149010349 149010500 -27963640 + MER5A DNA MER1_type 1 146 -43 2449 230 59 28 chrX 149010904 149011479 -27962661 - MLT1E LTR MaLR 0 593 1 267 269 194 38 chrX 149013034 149013220 -27960920 + L2 LINE L2 2403 2617 -697 5057 120 33 16 chrX 149013221 149013987 -27960153 - MER4E LTR ERV1 0 779 1 510 322 74 40 chrX 149014022 149014427 -27959713 + L2 LINE L2 2636 3072 -200 256 32 0 0 chrX 149014489 149014520 -27959620 - LTR7 LTR ERV1 -2 448 418 4235 152 8 1 chrX 149014547 149015205 -27958935 - HERVH LTR ERV1 -2564 5149 4488 3471 107 4 6 chrX 149015207 149015710 -27958430 - HERVH LTR ERV1 -3720 3993 3492 831 157 27 0 chrX 149015700 149015847 -27958293 - HERVH LTR ERV1 -4423 3290 3140 * 16589 88 39 10 chrX 149015841 149018868 -27955272 - HERVH LTR ERV1 -4726 2987 1 1680 152 110 61 chrX 149018870 149019297 -27954843 - LTR7 LTR ERV1 -2 448 1 336 345 14 7 chrX 149019337 149019482 -27954658 + L2 LINE L2 3168 3313 0 362 233 279 0 chrX 149019498 149019627 -27954513 + MIR SINE MIR 66 230 -32 299 308 144 0 chrX 149019843 149019947 -27954193 - L2 LINE L2 0 3272 3154 666 50 0 0 chrX 149022588 149022668 -27951472 - MADE1 DNA Mariner 0 80 1 4205 164 81 49 chrX 149022776 149023576 -27950564 + LTR1B LTR ERV1 1 826 0 948 320 77 17 chrX 149023722 149024297 -27949843 - L3 LINE CR1 -346 1231 623 475 212 166 71 chrX 149024607 149024932 -27949208 - L1ME4a LINE L1 -4 6117 5762 439 301 96 36 chrX 149024983 149025368 -27948772 - L1ME4a LINE L1 -2143 5665 5258 262 331 81 27 chrX 149025384 149025532 -27948608 + MIR SINE MIR 90 245 -17 457 226 9 9 chrX 149025770 149025876 -27948264 - MIR SINE MIR -83 179 74 297 353 50 0 chrX 149025904 149026023 -27948117 + MIR3 SINE MIR 76 200 -8 21 0 0 0 chrX 149026086 149026107 -27948033 + AT_rich Low_complexity Low_complexity 1 21 0 239 259 24 24 chrX 149026266 149026351 -27947789 + L2 LINE L2 2320 2404 -910 1028 237 77 84 chrX 149027372 149027777 -27946363 - L1MC4a LINE L1 -1037 6771 6370 2600 218 64 131 chrX 149027791 149028759 -27945381 - L1MDa LINE L1 -5578 962 60 544 184 42 2 chrX 149028821 149028952 -27945188 - L1P5 LINE L1 -712 5442 5294 21 0 0 0 chrX 149029315 149029336 -27944804 + AT_rich Low_complexity Low_complexity 1 21 0 189 205 103 0 chrX 149029565 149029604 -27944536 - MER5B DNA MER1_type -135 43 1 498 339 40 60 chrX 149030989 149031290 -27942850 + L2 LINE L2 2946 3240 -32 260 147 39 29 chrX 149031378 149031480 -27942660 + (TA)n Simple_repeat Simple_repeat 2 104 0 1524 154 0 4 chrX 149031480 149031714 -27942426 + MER46A DNA MER2_type 1 233 -3 357 24 0 0 chrX 149031715 149031757 -27942383 + (TG)n Simple_repeat Simple_repeat 1 42 0 528 208 102 121 chrX 149031758 149031949 -27942191 - MLT2C1 LTR ERVL -65 399 206 794 164 16 60 chrX 149031949 149032132 -27942008 - MLT1E3 LTR MaLR -385 239 65 528 208 102 121 chrX 149032132 149032189 -27941951 - MLT2C1 LTR ERVL -258 206 1 228 274 164 34 chrX 149032708 149032854 -27941286 + L2 LINE L2 3089 3253 -19 445 247 28 30 chrX 149033115 149033276 -27940864 - MIR SINE MIR -62 146 20 320 303 62 34 chrX 149034075 149034253 -27939887 - MIR SINE MIR -64 144 14 865 244 84 21 chrX 149034357 149034620 -27939520 - MLT1H LTR MaLR -244 305 20 347 312 100 51 chrX 149034761 149035072 -27939068 - L2 LINE L2 -467 2847 2522 2070 120 71 26 chrX 149035211 149035562 -27938578 - THE1C LTR MaLR -8 367 1 468 0 0 0 chrX 149036013 149036065 -27938075 + (TG)n Simple_repeat Simple_repeat 2 53 0 641 289 16 11 chrX 149036885 149037075 -27937065 - MIR SINE MIR -19 243 53 2368 75 0 3 chrX 149037083 149037376 -27936764 + AluY SINE Alu 1 292 -19 304 325 18 60 chrX 149037638 149037804 -27936336 + MIR SINE MIR 79 237 -25 461 196 28 9 chrX 149037907 149038014 -27936126 - MIR3 SINE MIR -19 189 81 637 286 41 5 chrX 149039976 149040185 -27933955 + MIR SINE MIR 14 233 -29 240 35 0 0 chrX 149041292 149041321 -27932819 + (CA)n Simple_repeat Simple_repeat 1 29 0 370 213 40 0 chrX 149041525 149041600 -27932540 + MIR SINE MIR 43 120 -88 1473 92 5 32 chrX 149042142 149042268 -27931872 + MSTC LTR MaLR 4 123 -305 2215 119 3 0 chrX 149042268 149042570 -27931570 - AluSx SINE Alu -9 303 1 1473 92 5 32 chrX 149042570 149042660 -27931480 + MSTC LTR MaLR 123 214 -214 718 85 0 0 chrX 149042664 149042758 -27931382 + MSTC LTR MaLR 335 428 0 1604 190 60 50 chrX 149042759 149043123 -27931017 + MLT1B LTR MaLR 23 390 0 1776 191 42 30 chrX 149043229 149043590 -27930550 - MLT1A1 LTR MaLR 0 365 1 292 255 47 47 chrX 149043596 149043702 -27930438 + MIR SINE MIR 40 145 -63 850 181 0 40 chrX 149044615 149044764 -27929376 + FRAM SINE Alu 1 142 -34 481 233 0 30 chrX 149044906 149045039 -27929101 - MER117 DNA MER1_type -68 129 1 267 291 46 82 chrX 149045866 149046062 -27928078 + L2 LINE L2 2866 3054 -218 279 0 0 0 chrX 149046101 149046132 -27928008 + (TC)n Simple_repeat Simple_repeat 2 32 0 431 349 53 0 chrX 149046702 149046871 -27927269 - MIR3 SINE MIR -3 205 28 782 215 55 0 chrX 149048048 149048211 -27925929 - MER69A DNA AcHobo -2 175 4 21 57 0 0 chrX 149048699 149048734 -27925406 + AT_rich Low_complexity Low_complexity 1 35 0 1431 250 50 24 chrX 149049069 149049485 -27924655 - MLT1J1 LTR MaLR -19 427 1 683 301 80 51 chrX 149050647 149051212 -27922928 + HAL1b LINE L1 67 647 -701 287 260 39 87 chrX 149051232 149051463 -27922677 + HAL1b LINE L1 714 933 -415 497 315 69 64 chrX 149051790 149052074 -27922066 + L1M4 LINE L1 2183 2473 -3673 1609 174 3 27 chrX 149052074 149052373 -27921767 + AluJo SINE Alu 3 294 -18 497 315 69 64 chrX 149052373 149052622 -27921518 + L1M4 LINE L1 2473 2719 -3427 467 217 6 137 chrX 149052669 149052844 -27921296 + MLT2E LTR ERVL 2 153 -475 225 294 68 48 chrX 149053030 149053176 -27920964 + MLT2E LTR ERVL 478 626 -2 831 191 22 38 chrX 149053406 149053589 -27920551 - MER58A DNA MER1_type 0 224 45 300 229 115 10 chrX 149054227 149054323 -27919817 - MIR SINE MIR -10 252 147 1345 228 130 20 chrX 149055054 149055494 -27918646 + L2 LINE L2 2697 3210 -103 3450 159 0 6 chrX 149055494 149056017 -27918123 - MLT2B1 LTR ERVL 0 520 1 1345 228 130 20 chrX 149056017 149056129 -27918011 + L2 LINE L2 3210 3308 -5 23 54 0 0 chrX 149056154 149056191 -27917949 + AT_rich Low_complexity Low_complexity 1 37 0 445 322 0 0 chrX 149056218 149056370 -27917770 - L1MC4a LINE L1 -1954 5854 5703 1704 162 62 16 chrX 149056384 149056904 -27917236 + L1PA10 LINE L1 4883 5894 -274 411 238 12 0 chrX 149056977 149057061 -27917079 - L2 LINE L2 0 3313 3229 263 137 0 20 chrX 149057078 149057129 -27917011 + (TTC)n Simple_repeat Simple_repeat 2 51 0 831 73 0 18 chrX 149057391 149057501 -27916639 - L1PA7 LINE L1 0 6154 6047 555 269 65 28 chrX 149058435 149058651 -27915489 + L2 LINE L2 3065 3288 -25 258 241 0 48 chrX 149058675 149058758 -27915382 + GA-rich Low_complexity Low_complexity 1 79 0 287 260 13 0 chrX 149061229 149061306 -27912834 + (CA)n Simple_repeat Simple_repeat 1 78 0 382 264 57 50 chrX 149061537 149061677 -27912463 - L2 LINE L2 0 3313 3173 1763 159 3 40 chrX 149061827 149061983 -27912157 - AluJb SINE Alu -21 291 150 2095 125 0 7 chrX 149061983 149062317 -27911823 - AluSx SINE Alu 0 312 1 1763 159 3 40 chrX 149062317 149062462 -27911678 - AluJb SINE Alu -162 150 1 382 325 70 83 chrX 149062493 149062807 -27911333 - L2 LINE L2 -70 3202 2893 1062 142 0 0 chrX 149063397 149063552 -27910588 + THE1B LTR MaLR 1 155 -209 298 238 0 0 chrX 149063554 149063617 -27910523 + MIR SINE MIR 195 257 -5 361 280 28 47 chrX 149063806 149063913 -27910227 - MIR SINE MIR -140 122 18 195 212 45 91 chrX 149064395 149064461 -27909679 - MIR SINE MIR -40 222 160 * 332 256 165 8 chrX 149064453 149064574 -27909566 + MIR SINE MIR 48 187 -75 436 302 113 13 chrX 149066205 149066364 -27907776 + MIR3 SINE MIR 12 186 -22 391 317 49 24 chrX 149066385 149066549 -27907591 + MER5A DNA MER1_type 21 188 -1 285 75 0 0 chrX 149066894 149066934 -27907206 + (CA)n Simple_repeat Simple_repeat 1 40 0 1083 170 59 22 chrX 149067616 149067899 -27906241 - MLT1F1 LTR MaLR 0 567 191 7669 50 0 2 chrX 149067985 149069243 -27904897 - L1PA5 LINE L1 -1 6153 4885 7137 45 3 1 chrX 149069249 149070121 -27904019 + L1P LINE L1 3949 4822 -1324 526 250 9 81 chrX 149070121 149070314 -27903826 - MLT1E LTR MaLR -369 173 1 241 282 51 67 chrX 149071100 149071295 -27902845 - L2 LINE L2 0 3313 3122 678 160 10 107 chrX 149071959 149072165 -27901975 + MER53 DNA DNA 4 189 0 443 283 18 24 chrX 149072209 149072356 -27901784 + MIR SINE MIR 2 156 -52 2459 155 26 0 chrX 149073348 149073728 -27900412 + MLT1B LTR MaLR 1 390 0 1825 154 40 0 chrX 149073984 149074160 -27899980 - AluSx SINE Alu -1 311 117 423 0 0 0 chrX 149074160 149074207 -27899933 + (TA)n Simple_repeat Simple_repeat 2 48 0 1825 154 40 0 chrX 149074207 149074329 -27899811 - AluSx SINE Alu -195 117 1 222 231 231 9 chrX 149074385 149074493 -27899647 - L2 LINE L2 -481 2833 2702 379 280 32 0 chrX 149074704 149074797 -27899343 + MLT1J1 LTR MaLR 1 96 -350 1264 218 75 26 chrX 149074912 149075219 -27898921 + MER2 DNA MER2_type 2 323 -22 602 277 12 10 chrX 149075247 149075432 -27898708 + MLT1J2 LTR MaLR 263 401 -8 668 299 34 103 chrX 149075456 149075844 -27898296 - L2 LINE L2 -8 3264 2904 289 0 49 0 chrX 149076809 149076850 -27897290 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 266 200 0 0 chrX 149077030 149077075 -27897065 - MIR SINE MIR -16 246 202 916 283 227 13 chrX 149077100 149077492 -27896648 + MLT1H1 LTR MaLR 3 478 -77 287 338 80 75 chrX 149077917 149078326 -27895814 + L2 LINE L2 2530 2954 -318 2170 195 47 73 chrX 149078326 149078834 -27895306 + LTR42 LTR ERVL 1 495 0 287 338 80 75 chrX 149078834 149079090 -27895050 + L2 LINE L2 2954 3207 -65 363 211 0 14 chrX 149080422 149080493 -27893647 + MER69 DNA AcHobo 2456 2525 -1 445 275 82 102 chrX 149080650 149080894 -27893246 - L2 LINE L2 -5 3267 3029 2213 141 36 33 chrX 149081330 149081693 -27892447 + THE1B LTR MaLR 1 364 0 12044 95 19 2 chrX 149081693 149083246 -27890894 + THE1B-int LTR MaLR 1 1580 0 2236 135 36 33 chrX 149083246 149083609 -27890531 + THE1B LTR MaLR 1 364 0 293 193 36 24 chrX 149083665 149083748 -27890392 - L1MB8 LINE L1 -51 6127 6044 200 309 41 10 chrX 149083771 149083868 -27890272 + MIR SINE MIR 151 250 -12 2172 237 81 11 chrX 149083883 149084440 -27889700 + L1M4 LINE L1 8 603 -5939 * 2407 250 51 35 chrX 149084437 149085908 -27888232 + L1M4 LINE L1 1416 3017 -3627 1259 202 47 7 chrX 149085875 149086172 -27887968 + L1M4 LINE L1 4968 5276 -1368 * 3330 159 2 26 chrX 149086172 149086706 -27887434 + MER54B LTR ERVL 1 521 -272 2112 122 17 30 chrX 149086710 149087071 -27887069 + Tigger2a DNA MER2_type 5 360 -74 1348 214 32 0 chrX 149087075 149087384 -27886756 + L1M4 LINE L1 5401 5719 -925 * 16709 159 16 2 chrX 149087379 149090044 -27884096 + L1MA3 LINE L1 16 2716 -4849 6615 149 20 25 chrX 149090051 149090453 -27883687 + L1MA3 LINE L1 5473 5875 -1849 2254 96 7 0 chrX 149090453 149090746 -27883394 + AluSq SINE Alu 1 295 -18 6615 149 20 25 chrX 149090746 149092600 -27881540 + L1MA3 LINE L1 5875 7724 0 24 0 0 0 chrX 149092701 149092725 -27881415 + AT_rich Low_complexity Low_complexity 1 24 0 5092 155 22 8 chrX 149092767 149092866 -27881274 - L1MA8 LINE L1 -431 5860 5764 279 0 0 0 chrX 149092866 149092897 -27881243 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 5092 155 22 8 chrX 149092897 149094137 -27880003 - L1MA8 LINE L1 -527 5764 4501 33 66 0 0 chrX 149094137 149094198 -27879942 + AT_rich Low_complexity Low_complexity 1 61 0 696 272 12 6 chrX 149094703 149094872 -27879268 - MER5B DNA MER1_type -6 172 3 206 324 152 19 chrX 149096043 149096148 -27877992 - L2 LINE L2 -3 3269 3151 257 188 47 0 chrX 149096152 149096216 -27877924 + L1M4 LINE L1 4782 4848 -1298 * 6444 226 79 11 chrX 149096213 149098890 -27875250 - L1MD2 LINE L1 -394 5965 3100 5952 94 5 4 chrX 149098908 149099715 -27874425 - L1PA10 LINE L1 -4 6164 5357 661 221 107 12 chrX 149099708 149099961 -27874179 - L1MD2 LINE L1 -3067 3079 2803 * 6542 92 69 0 chrX 149100149 149101195 -27872945 - L1PA10 LINE L1 0 6168 5109 3514 241 56 22 chrX 149101207 149102197 -27871943 + HERVL68 LTR ERVL 1416 2438 -599 1951 187 69 36 chrX 149102233 149102726 -27871414 + HERVL68 LTR ERVL 2517 3025 -12 2354 209 31 20 chrX 149102726 149103276 -27870864 + MER68 LTR ERV1 1 556 -6 210 311 0 0 chrX 149103365 149103426 -27870714 - MIR SINE MIR -1 261 201 303 228 0 25 chrX 149103464 149103543 -27870597 + L1MC3 LINE L1 7709 7785 0 2209 183 23 5 chrX 149103720 149104152 -27869988 + L1MB3 LINE L1 5741 6180 -3 1835 166 7 3 chrX 149104178 149104474 -27869666 + AluJo SINE Alu 1 297 -15 410 260 19 7 chrX 149104486 149104640 -27869500 + L1MCa LINE L1 1058 1213 -5213 344 259 107 46 chrX 149105247 149105463 -27868677 + L1MD2 LINE L1 5910 6138 -221 7516 93 17 19 chrX 149105487 149106545 -27867595 + MER11C LTR ERVK 1 1056 -15 1661 271 79 17 chrX 149106597 149107354 -27866786 + L1MCa LINE L1 2595 3398 -3028 229 138 15 46 chrX 149107354 149107368 -27866772 + (TA)n Simple_repeat Simple_repeat 2 15 -49 2130 80 0 0 chrX 149107368 149107630 -27866510 + AluSg SINE Alu 30 291 -19 229 138 15 46 chrX 149107630 149107680 -27866460 + (TA)n Simple_repeat Simple_repeat 15 64 0 1902 115 0 0 chrX 149107755 149108008 -27866132 - AluSx SINE Alu -24 288 36 2156 113 0 7 chrX 149108236 149108528 -27865612 - AluSg SINE Alu -20 290 1 335 308 92 26 chrX 149109760 149109955 -27864185 + MIR SINE MIR 20 227 -35 705 193 0 0 chrX 149111043 149111157 -27862983 - L1M1 LINE L1 -6333 1232 1119 754 214 7 0 chrX 149111238 149111383 -27862757 - MER54B LTR ERVL -647 146 1 419 254 0 32 chrX 149111386 149111512 -27862628 - MER57-int LTR ERV1 -789 7027 6906 282 262 0 0 chrX 149111492 149111553 -27862587 - MER70-int LTR ERVL -359 4664 4604 * 2127 189 38 24 chrX 149111804 149112221 -27861919 + Tigger2a DNA MER2_type 7 429 -5 2096 250 49 16 chrX 149112234 149113026 -27861114 - MER57-int LTR ERV1 -518 4418 3357 679 245 35 22 chrX 149113016 149113206 -27860934 - MER57-int LTR ERV1 -1114 5440 3652 * 543 262 12 117 chrX 149113207 149113588 -27860552 - MER57-int LTR ERV1 -3791 2540 493 1011 210 58 61 chrX 149114135 149114562 -27859578 - LTR54 LTR ERV1 0 510 19 2814 219 94 76 chrX 149114654 149115804 -27858336 - L1MCb LINE L1 -4870 1175 5 3282 60 0 2 chrX 149115861 149116275 -27857865 - L1PA7 LINE L1 -59 6095 5688 455 98 98 37 chrX 149116271 149116353 -27857787 + L1PA7 LINE L1 6059 6145 -9 * 2267 286 35 7 chrX 149116570 149117239 -27856901 + L1MD2 LINE L1 4358 5060 -1086 2405 77 0 16 chrX 149117239 149117522 -27856618 + AluSg SINE Alu 1 280 -30 271 0 0 0 chrX 149117522 149117552 -27856588 + (CAAA)n Simple_repeat Simple_repeat 2 148 0 2405 77 0 16 chrX 149117552 149117579 -27856561 + AluSg SINE Alu 280 306 -4 2267 286 35 7 chrX 149117579 149117803 -27856337 + L1MD2 LINE L1 5060 5276 -870 1389 235 124 5 chrX 149117831 149118274 -27855866 - LTR54B LTR ERV1 -2 496 1 2205 247 78 24 chrX 149118290 149118998 -27855142 + L1MD2 LINE L1 5315 6060 -299 1509 299 37 22 chrX 149118999 149119779 -27854361 + L1M4 LINE L1 2429 3220 -2926 1712 168 3 0 chrX 149119832 149120123 -27854017 + AluSx SINE Alu 1 292 -20 2392 123 86 11 chrX 149120316 149120757 -27853383 + MER1A DNA MER1_type 1 529 0 461 304 75 26 chrX 149121949 149122176 -27851964 + MIR SINE MIR 13 250 -12 192 91 68 0 chrX 149128061 149128105 -27846035 + G-rich Low_complexity Low_complexity 1 47 0 338 21 0 42 chrX 149128505 149128553 -27845587 + (GGGTG)n Simple_repeat Simple_repeat 1 46 0 321 273 33 13 chrX 149129711 149129861 -27844279 + (TATATG)n Simple_repeat Simple_repeat 6 158 0 * 371 282 18 12 chrX 149129749 149129919 -27844221 + (TA)n Simple_repeat Simple_repeat 1 171 0 245 317 65 20 chrX 149130453 149130806 -27843334 - L1M4 LINE L1 -1573 4573 4205 364 348 75 36 chrX 149130998 149131409 -27842731 - L1M4 LINE L1 -2158 3988 3562 1458 225 66 46 chrX 149131473 149132083 -27842057 - L1MC/D LINE L1 -745 5401 5182 2190 105 0 0 chrX 149132084 149132389 -27841751 - AluSg SINE Alu -5 305 1 180 111 0 0 chrX 149133004 149133031 -27841109 + (GA)n Simple_repeat Simple_repeat 2 28 0 662 178 13 0 chrX 149133034 149133186 -27840954 + GA-rich Low_complexity Low_complexity 1 154 0 2417 59 0 0 chrX 149133547 149133851 -27840289 - AluY SINE Alu -7 304 1 394 245 129 25 chrX 149137255 149137418 -27836722 + MIR SINE MIR 13 192 -70 460 235 60 38 chrX 149139969 149140152 -27833988 + MER5A DNA MER1_type 3 189 0 200 214 0 0 chrX 149140783 149140825 -27833315 - MIR SINE MIR -115 147 106 1851 258 92 28 chrX 149142865 149143933 -27830207 - L1MD2 LINE L1 -244 6115 4987 795 270 119 71 chrX 149144792 149144824 -27829316 + L1ME4a LINE L1 5530 5559 -562 868 165 0 0 chrX 149144824 149144957 -27829183 - FLAM_C SINE Alu 0 133 1 795 270 119 71 chrX 149144957 149145487 -27828653 + L1ME4a LINE L1 5559 6119 -2 224 349 76 25 chrX 149147117 149147392 -27826748 + L2 LINE L2 2385 2673 -641 1948 222 57 53 chrX 149147446 149148010 -27826130 - MER119 DNA MER1_type 0 583 18 737 89 0 0 chrX 149148430 149148520 -27825620 + MER2 DNA MER2_type 2 91 -254 204 286 85 42 chrX 149148538 149148727 -27825413 + L2 LINE L2 1424 1620 -1694 515 253 274 16 chrX 149148933 149149123 -27825017 + MIR SINE MIR 14 252 -10 324 258 11 45 chrX 149149162 149149251 -27824889 + L2 LINE L2 3227 3312 -1 1834 151 128 28 chrX 149149326 149149684 -27824456 + MLT2C1 LTR ERVL 4 397 0 1958 105 0 0 chrX 149149883 149150149 -27823991 - AluSx SINE Alu -12 300 35 2287 90 13 3 chrX 149151701 149152011 -27822129 + AluSq SINE Alu 1 313 0 376 334 75 44 chrX 149153118 149153480 -27820660 - L2 LINE L2 -2 3270 2898 592 268 71 27 chrX 149153676 149153900 -27820240 + L1MEc LINE L1 34 267 -6129 * 888 193 56 17 chrX 149153877 149154110 -27820030 + L1MEc LINE L1 2213 2454 -3942 2442 199 21 29 chrX 149154113 149154635 -27819505 - MLT1E2 LTR MaLR -4 622 105 2139 193 32 67 chrX 149154641 149155219 -27818921 + MLT1E2 LTR MaLR 3 558 -67 518 129 0 121 chrX 149155250 149155366 -27818774 - MLT1E2 LTR MaLR -524 102 1 2902 233 62 36 chrX 149155366 149156377 -27817763 + L1MEc LINE L1 2410 3447 -2768 3038 208 61 75 chrX 149156394 149157393 -27816747 + L1MEc LINE L1 3547 4531 -1684 1455 184 39 36 chrX 149157393 149157730 -27816410 - MLT1A1 LTR MaLR -26 339 2 324 145 116 0 chrX 149157735 149157804 -27816336 + L1MEc LINE L1 4546 4622 -1593 1529 179 96 40 chrX 149157816 149158247 -27815893 - MLT1D LTR MaLR 0 505 1 2675 251 102 16 chrX 149158260 149159470 -27814670 + L1MEc LINE L1 4634 5958 -408 2204 189 20 7 chrX 149159105 149159555 -27814585 + L1ME1 LINE L1 5584 6039 -196 * 316 274 212 0 chrX 149159558 149159671 -27814469 - MIR SINE MIR -124 138 2 257 282 30 84 chrX 149159979 149160110 -27814030 + MIR SINE MIR 101 224 -38 3722 194 51 11 chrX 149160155 149160996 -27813144 - Charlie1a DNA MER1_type -26 1429 555 3849 38 0 0 chrX 149161055 149161505 -27812635 - L1PA3 LINE L1 0 6155 5706 2287 12 0 0 chrX 149161505 149161756 -27812384 + L1PA3 LINE L1 5457 5707 -448 2397 187 78 31 chrX 149161756 149162295 -27811845 - Charlie1a DNA MER1_type -887 568 5 2018 152 58 80 chrX 149163069 149163583 -27810557 - MLT1D LTR MaLR -2 503 1 1448 181 34 0 chrX 149164438 149164730 -27809410 - L1MA4 LINE L1 0 6300 5999 367 298 109 61 chrX 149165071 149165447 -27808693 + L1 LINE L1 2939 3332 -2814 186 189 0 0 chrX 149165899 149165936 -27808204 + GA-rich Low_complexity Low_complexity 4 40 0 270 290 0 0 chrX 149166071 149166140 -27808000 + (CA)n Simple_repeat Simple_repeat 1 69 0 294 330 75 0 chrX 149166353 149166459 -27807681 + MIR SINE MIR 23 136 -72 1798 246 60 14 chrX 149166935 149167419 -27806721 - MARNA DNA Mariner -16 570 65 426 335 139 9 chrX 149167550 149167765 -27806375 + MIR SINE MIR 20 262 0 185 274 60 24 chrX 149167982 149168066 -27806074 + L2 LINE L2 2871 2957 -356 4037 175 35 59 chrX 149168084 149169063 -27805077 - LTR5 LTR ERVK -14 955 1 210 333 51 88 chrX 149169141 149169414 -27804726 + L2 LINE L2 3007 3269 -3 438 290 88 112 chrX 149170463 149170828 -27803312 - L2 LINE L2 -2 3270 2915 208 211 197 0 chrX 149172115 149172186 -27801954 - MIR3 SINE MIR -41 167 83 335 235 67 34 chrX 149172225 149172344 -27801796 - L2 LINE L2 -9 3263 3141 366 184 0 0 chrX 149173238 149173314 -27800826 + (CCG)n Simple_repeat Simple_repeat 2 77 0 382 279 101 6 chrX 149174028 149174186 -27799954 + MIR SINE MIR 89 261 -1 195 271 33 57 chrX 149174707 149174829 -27799311 - MIR SINE MIR -125 137 19 303 266 0 32 chrX 149177285 149177379 -27796761 - L2 LINE L2 -3 3269 3179 181 273 0 0 chrX 149177684 149177728 -27796412 + L2 LINE L2 3226 3269 -3 1838 188 60 40 chrX 149178159 149178611 -27795529 + MLT1C LTR MaLR 2 462 -5 2702 97 5 5 chrX 149178651 149179021 -27795119 + THE1C LTR MaLR 6 375 0 3342 80 7 22 chrX 149179107 149179558 -27794582 - MLT2A1 LTR ERVL 0 444 1 5335 91 19 5 chrX 149179771 149180527 -27793613 - L1PB2 LINE L1 0 6151 5386 462 238 42 30 chrX 149180950 149181118 -27793022 + L1M4 LINE L1 4466 4635 -1511 283 250 98 36 chrX 149182652 149182764 -27791376 - MLT1I LTR MaLR -272 137 19 16074 124 29 68 chrX 149182816 149184477 -27789663 - Tigger2 DNA MER2_type 0 2718 1212 378 42 0 0 chrX 149184477 149184525 -27789615 + (TA)n Simple_repeat Simple_repeat 1 48 0 16074 124 29 68 chrX 149184525 149185692 -27788448 - Tigger2 DNA MER2_type -1506 1212 1 408 288 102 23 chrX 149186805 149187020 -27787120 + MIR SINE MIR 20 251 -11 2509 67 13 0 chrX 149187022 149187321 -27786819 - AluSp SINE Alu -10 303 1 8517 177 19 64 chrX 149188516 149190355 -27783785 + MER52A LTR ERV1 1 1755 0 308 173 0 0 chrX 149191893 149191945 -27782195 + MER50 LTR ERV1 1 52 -682 1046 124 47 0 chrX 149191985 149192154 -27781986 + MER50 LTR ERV1 53 229 -505 * 1148 181 68 93 chrX 149192148 149192181 -27781959 + MER50 LTR ERV1 433 465 -269 2112 109 70 50 chrX 149192181 149192538 -27781602 + THE1B LTR MaLR 1 364 0 1148 181 68 93 chrX 149192538 149192673 -27781467 + MER50 LTR ERV1 465 592 -142 207 0 0 0 chrX 149192673 149192696 -27781444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1148 181 68 93 chrX 149192696 149192836 -27781304 + MER50 LTR ERV1 592 734 0 903 287 32 36 chrX 149196580 149197110 -27777030 - L1MC5 LINE L1 -34 7927 7400 1206 254 25 11 chrX 149197115 149197477 -27776663 - L1MCb LINE L1 -4899 1146 780 786 168 0 0 chrX 149197480 149197617 -27776523 + L1MC3 LINE L1 7636 7772 -13 451 270 11 48 chrX 149197620 149197809 -27776331 + L1MC5 LINE L1 6956 7137 -824 540 264 43 97 chrX 149198665 149198964 -27775176 + L2 LINE L2 3030 3312 -1 294 239 0 0 chrX 149199634 149199705 -27774435 - L2 LINE L2 0 3313 3243 518 229 8 53 chrX 149199715 149199846 -27774294 + L1MD3 LINE L1 7526 7650 -345 249 33 0 0 chrX 149202311 149202341 -27771799 + (TG)n Simple_repeat Simple_repeat 1 30 0 1556 150 10 48 chrX 149202342 149202636 -27771504 - AluJo SINE Alu -25 287 5 1177 158 124 41 chrX 149202814 149203080 -27771060 - L1MA9 LINE L1 -1 6311 6024 303 71 0 0 chrX 149203291 149203333 -27770807 + (GA)n Simple_repeat Simple_repeat 2 43 0 741 212 71 20 chrX 149203825 149204023 -27770117 + MER3 DNA MER1_type 1 208 -1 406 298 0 0 chrX 149204033 149204147 -27769993 - MIR SINE MIR -65 143 30 315 0 0 0 chrX 149204654 149204689 -27769451 + (CA)n Simple_repeat Simple_repeat 1 35 0 791 233 32 11 chrX 149204946 149205135 -27769005 + 7SK RNA RNA 1 193 0 189 239 225 0 chrX 149206013 149206084 -27768056 - L3 LINE CR1 -110 1467 1381 324 304 184 6 chrX 149206106 149206264 -27767876 - MIR SINE MIR -17 245 60 232 363 79 47 chrX 149206297 149206575 -27767565 - L3 LINE CR1 -193 1384 1098 307 138 31 0 chrX 149206575 149206640 -27767500 - L1PA16 LINE L1 -3 6163 6097 407 300 53 25 chrX 149206791 149207074 -27767066 - L1ME4a LINE L1 -203 5918 5628 952 241 50 11 chrX 149207111 149208184 -27765956 + L1ME LINE L1 4493 5729 -437 539 319 29 0 chrX 149208184 149208394 -27765746 + MIR SINE MIR 47 262 0 250 309 79 28 chrX 149208554 149208732 -27765408 + L2 LINE L2 1177 1363 -1951 21 0 0 0 chrX 149208775 149208796 -27765344 + AT_rich Low_complexity Low_complexity 1 21 0 247 242 95 0 chrX 149208796 149208891 -27765249 - L1 LINE L1 -1089 5057 4954 * 985 306 89 39 chrX 149208883 149210148 -27763992 - L1 LINE L1 -1562 4584 3256 22 0 0 0 chrX 149212589 149212611 -27761529 + AT_rich Low_complexity Low_complexity 1 22 0 336 276 90 21 chrX 149213738 149213883 -27760257 + MIR SINE MIR 84 238 -24 184 226 48 48 chrX 149214186 149214248 -27759892 + MIR SINE MIR 66 127 -135 758 114 6 127 chrX 149216066 149216224 -27757916 - MER1B DNA MER1_type -1 338 200 420 234 16 47 chrX 149216668 149216796 -27757344 - MIR SINE MIR -92 170 47 209 336 30 8 chrX 149217724 149217855 -27756285 + MIR3 SINE MIR 60 193 -15 402 246 18 27 chrX 149218766 149218876 -27755264 - MER94 DNA DNA -24 110 2 412 232 56 40 chrX 149219015 149219140 -27755000 - L2 LINE L2 0 3272 3146 273 216 0 40 chrX 149219241 149219315 -27754825 - MER103 DNA DNA -1 165 95 180 77 0 0 chrX 149219400 149219426 -27754714 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 294 266 59 108 chrX 149219828 149220031 -27754109 + MIR SINE MIR 20 212 -50 389 325 23 29 chrX 149223038 149223278 -27750862 + MIR3 SINE MIR 8 245 -17 297 323 0 32 chrX 149224699 149224823 -27749317 + MIR3 SINE MIR 41 160 -48 1598 269 97 46 chrX 149225339 149226074 -27748066 - L2 LINE L2 -1274 2040 1269 198 351 43 0 chrX 149228914 149229008 -27745132 - L2 LINE L2 -13 3300 3203 1553 153 62 115 chrX 149229008 149229426 -27744714 + MSTD LTR MaLR 1 396 0 277 233 209 35 chrX 149230065 149230151 -27743989 + MIR3 SINE MIR 72 172 -36 369 0 0 0 chrX 149231520 149231561 -27742579 + (TA)n Simple_repeat Simple_repeat 2 42 0 2219 110 7 3 chrX 149231563 149231873 -27742267 - AluY SINE Alu 0 311 1 300 342 25 56 chrX 149232334 149232530 -27741610 - MIR SINE MIR -71 191 2 444 262 6 98 chrX 149233536 149233700 -27740440 - MIR3 SINE MIR -30 178 30 1310 93 0 6 chrX 149234927 149235099 -27739041 - AluSg/x SINE Alu -17 295 125 634 290 98 13 chrX 149235120 149235344 -27738796 - MIR SINE MIR -11 251 9 2635 99 6 3 chrX 149235873 149236236 -27737904 + THE1B LTR MaLR 1 364 0 5360 71 3 14 chrX 149236535 149237254 -27736886 - L1PA10 LINE L1 -4 6164 5454 287 280 64 16 chrX 149237827 149237952 -27736188 + MIR3 SINE MIR 75 205 -3 240 35 0 0 chrX 149240052 149240081 -27734059 + (CA)n Simple_repeat Simple_repeat 2 30 0 252 249 243 17 chrX 149240334 149240511 -27733629 - MIR SINE MIR 0 262 46 1762 172 10 65 chrX 149240631 149241044 -27733096 + MLT1B LTR MaLR 1 390 0 496 265 8 0 chrX 149241288 149241405 -27732735 - MIR SINE MIR -11 251 134 25 0 0 0 chrX 149244750 149244775 -27729365 + AT_rich Low_complexity Low_complexity 1 25 0 193 302 12 93 chrX 149245044 149245130 -27729010 + MIR3 SINE MIR 15 93 -115 309 140 21 118 chrX 149245130 149245223 -27728917 + MLT1D LTR MaLR 1 84 -421 19899 100 22 19 chrX 149245251 149251530 -27722610 + L1PA7 LINE L1 8 6469 0 953 232 99 68 chrX 149251530 149251913 -27722227 + MLT1D LTR MaLR 106 500 -5 226 248 120 24 chrX 149251915 149252040 -27722100 + MIR SINE MIR 105 241 -21 201 143 0 29 chrX 149252880 149252915 -27721225 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 965 125 12 0 chrX 149253618 149253778 -27720362 + (TTTC)n Simple_repeat Simple_repeat 3 164 0 188 139 0 23 chrX 149254286 149254329 -27719811 + (TTTTTA)n Simple_repeat Simple_repeat 1 42 0 897 103 140 6 chrX 149254329 149254495 -27719645 - L1PA8A LINE L1 -2 6129 5941 324 120 0 0 chrX 149254836 149254886 -27719254 + (A)n Simple_repeat Simple_repeat 1 50 0 358 278 10 0 chrX 149256102 149256199 -27717941 - MER68 LTR ERV1 -8 554 457 1254 206 42 11 chrX 149256283 149256570 -27717570 - MER68 LTR ERV1 -265 297 2 300 284 15 0 chrX 149257310 149257377 -27716763 + L2 LINE L2 3204 3271 -1 222 283 172 0 chrX 149258330 149258429 -27715711 + MIR SINE MIR 77 192 -70 198 118 0 0 chrX 149258815 149258849 -27715291 + (TG)n Simple_repeat Simple_repeat 1 34 0 194 293 121 69 chrX 149259193 149259367 -27714773 - L2 LINE L2 -168 3104 2922 198 317 20 89 chrX 149260603 149260670 -27713470 - L3b LINE CR1 -66 1517 1456 7677 22 0 0 chrX 149260670 149261717 -27712423 + L1PA3 LINE L1 5136 6182 0 198 317 20 89 chrX 149261717 149261748 -27712392 - L3b LINE CR1 -127 1456 1424 255 286 0 0 chrX 149262136 149262206 -27711934 + A-rich Low_complexity Low_complexity 3 72 0 788 120 0 45 chrX 149262208 149262341 -27711799 + FLAM_C SINE Alu 1 127 -6 620 106 29 0 chrX 149263785 149263889 -27710251 - L1MA8 LINE L1 -108 6183 6077 479 167 0 0 chrX 149264802 149264892 -27709248 + L1PB1 LINE L1 5703 5792 -359 225 154 0 0 chrX 149264892 149264931 -27709209 + (CA)n Simple_repeat Simple_repeat 2 40 0 2912 52 5 3 chrX 149264967 149265335 -27708805 + L1PB1 LINE L1 5776 6144 -7 363 209 0 0 chrX 149265371 149265476 -27708664 + (TA)n Simple_repeat Simple_repeat 1 105 0 222 219 202 44 chrX 149265587 149265701 -27708439 - L2 LINE L2 -2 3311 3180 * 465 291 0 0 chrX 149265687 149265797 -27708343 + L2 LINE L2 3204 3313 0 183 42 0 0 chrX 149265911 149265935 -27708205 + (A)n Simple_repeat Simple_repeat 1 24 0 207 288 50 0 chrX 149266259 149266339 -27707801 - MIR SINE MIR -67 195 112 25 31 0 0 chrX 149267282 149267314 -27706826 + AT_rich Low_complexity Low_complexity 1 32 0 1306 128 0 5 chrX 149268320 149268508 -27705632 + AluSq SINE Alu 1 187 -126 826 239 149 27 chrX 149268509 149268986 -27705154 + L1ME4a LINE L1 5573 6107 -14 279 257 0 14 chrX 149269950 149270020 -27704120 + (CATATA)n Simple_repeat Simple_repeat 3 71 0 811 238 17 0 chrX 149270054 149270226 -27703914 - MER58A DNA MER1_type -5 219 45 21 0 0 0 chrX 149270706 149270727 -27703413 + AT_rich Low_complexity Low_complexity 1 21 0 655 297 46 14 chrX 149271156 149271375 -27702765 - MIR SINE MIR -35 227 2 377 109 16 0 chrX 149271630 149271694 -27702446 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1541 214 23 27 chrX 149275205 149275570 -27698570 + MLT1A1 LTR MaLR 1 454 -3 350 252 29 162 chrX 149276554 149276764 -27697376 - MIR SINE MIR 0 262 81 2232 87 3 7 chrX 149277125 149277446 -27696694 + AluSq SINE Alu 1 320 0 298 235 62 0 chrX 149277578 149277659 -27696481 + MIR SINE MIR 100 185 -77 1002 176 0 18 chrX 149277957 149278127 -27696013 + FRAM SINE Alu 1 166 -10 362 290 21 0 chrX 149280031 149280124 -27694016 - L2 LINE L2 -1 3271 3177 257 303 79 0 chrX 149280155 149280244 -27693896 - L2 LINE L2 -185 3087 2992 204 40 0 0 chrX 149280724 149280749 -27693391 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 2064 114 0 0 chrX 149281351 149281631 -27692509 + AluSx SINE Alu 1 280 -32 219 88 0 0 chrX 149281631 149281665 -27692475 + (TAA)n Simple_repeat Simple_repeat 1 34 0 281 279 116 27 chrX 149282113 149282260 -27691880 - MIR3 SINE MIR -17 191 32 290 304 136 11 chrX 149282797 149282988 -27691152 + L1ME4a LINE L1 5816 6030 -91 22 70 0 0 chrX 149283039 149283082 -27691058 + AT_rich Low_complexity Low_complexity 1 43 0 335 291 94 31 chrX 149283113 149283240 -27690900 + MIR SINE MIR 58 192 -70 14577 191 13 8 chrX 149285228 149291772 -27682368 + L1PB1 LINE L1 6 6866 -1 180 0 0 0 chrX 149292028 149292048 -27682092 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 284 307 71 31 chrX 149292420 149292547 -27681593 + MIR3 SINE MIR 58 189 -19 347 326 107 31 chrX 149292900 149293096 -27681044 + MIR SINE MIR 42 252 -10 261 57 0 0 chrX 149293960 149293995 -27680145 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 33 0 0 0 chrX 149294297 149294330 -27679810 + AT_rich Low_complexity Low_complexity 1 33 0 191 262 48 60 chrX 149294680 149294764 -27679376 - MIR SINE MIR -96 166 84 7941 10 0 0 chrX 149294805 149295794 -27678346 - L1PA2 LINE L1 0 6155 5168 307 256 12 99 chrX 149297408 149297539 -27676601 - MIR SINE MIR -66 142 66 255 238 32 103 chrX 149297691 149297817 -27676323 + L2 LINE L2 2578 2694 -620 222 402 73 12 chrX 149299667 149299831 -27674309 + MIR SINE MIR 11 184 -78 21 36 0 0 chrX 149300175 149300203 -27673937 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 149300318 149300354 -27673786 + AT_rich Low_complexity Low_complexity 1 36 0 2058 185 54 7 chrX 149300423 149300849 -27673291 + HERVL68 LTR ERVL 2573 3018 -19 1406 278 48 20 chrX 149300863 149301410 -27672730 + MER68 LTR ERV1 1 562 0 528 328 46 10 chrX 149302707 149302902 -27671238 + MIR SINE MIR 49 250 -12 297 75 0 0 chrX 149303459 149303499 -27670641 + (A)n Simple_repeat Simple_repeat 1 40 0 306 311 78 56 chrX 149304410 149304872 -27669268 - L2 LINE L2 -195 3077 2571 183 42 0 0 chrX 149305148 149305172 -27668968 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1437 210 87 45 chrX 149305292 149305740 -27668400 + MLT1C LTR MaLR 1 467 0 586 246 108 6 chrX 149305957 149306124 -27668016 - MIR SINE MIR -71 191 8 333 151 35 12 chrX 149307002 149307088 -27667052 + GA-rich Low_complexity Low_complexity 2 89 0 223 227 0 0 chrX 149307507 149307551 -27666589 - L2 LINE L2 -16 3256 3213 207 303 45 0 chrX 149307733 149307799 -27666341 - MIR SINE MIR -74 188 120 317 296 24 48 chrX 149308540 149308665 -27665475 - L2 LINE L2 0 3272 3151 26 0 0 0 chrX 149308678 149308704 -27665436 + AT_rich Low_complexity Low_complexity 1 26 0 436 342 22 36 chrX 149308775 149309000 -27665140 - MIR SINE MIR -21 241 20 328 296 56 7 chrX 149309591 149309733 -27664407 + L2 LINE L2 2832 2980 -333 2505 216 22 15 chrX 149309806 149310407 -27663733 - L1MB5 LINE L1 0 6174 5570 619 249 11 37 chrX 149310409 149310598 -27663542 + L2 LINE L2 3117 3300 -13 237 264 0 14 chrX 149311076 149311158 -27662982 + L1MB4 LINE L1 5696 5774 -539 229 271 35 0 chrX 149311268 149311353 -27662787 + (TA)n Simple_repeat Simple_repeat 1 88 0 386 253 0 130 chrX 149312543 149312705 -27661435 - L2 LINE L2 0 3313 3173 1276 233 97 68 chrX 149314066 149314661 -27659479 + L2 LINE L2 2722 3313 0 768 171 6 32 chrX 149316756 149316914 -27657226 + L1MB4 LINE L1 6027 6180 0 228 321 3 10 chrX 149317224 149317334 -27656806 + MIR SINE MIR 42 151 -57 223 312 70 51 chrX 149317540 149317697 -27656443 - MIR3 SINE MIR -43 165 6 376 250 60 17 chrX 149317800 149317916 -27656224 - MIR SINE MIR -10 252 132 221 290 113 0 chrX 149317973 149318035 -27656105 - L2 LINE L2 0 3313 3245 975 96 0 0 chrX 149318646 149318804 -27655336 - AluSg/x SINE Alu 0 316 159 363 360 19 12 chrX 149319690 149319851 -27654289 + MIR SINE MIR 84 245 -17 23 0 0 0 chrX 149319890 149319913 -27654227 + AT_rich Low_complexity Low_complexity 1 23 0 279 332 167 53 chrX 149321463 149322032 -27652108 - L3 LINE CR1 -1 1576 943 231 325 24 12 chrX 149322127 149322210 -27651930 - L2 LINE L2 -5 3267 3184 788 162 0 15 chrX 149322427 149322563 -27651577 + AluJ SINE Alu 1 134 -178 2244 107 0 0 chrX 149322567 149322857 -27651283 + AluSx SINE Alu 1 290 -22 304 286 44 0 chrX 149322876 149322967 -27651173 - L1MC4 LINE L1 -1337 6705 6611 999 139 0 0 chrX 149322981 149323161 -27650979 + (TA)n Simple_repeat Simple_repeat 1 180 0 312 149 30 45 chrX 149323261 149323328 -27650812 - L1MCa LINE L1 -4366 2060 1995 1061 149 0 36 chrX 149323330 149323498 -27650642 + AluJ SINE Alu 133 294 -18 369 0 0 0 chrX 149326340 149326381 -27647759 + (CA)n Simple_repeat Simple_repeat 2 42 0 234 0 0 0 chrX 149326382 149326408 -27647732 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chrX 149326699 149326719 -27647421 + (CAA)n Simple_repeat Simple_repeat 2 21 0 387 0 0 0 chrX 149326931 149326974 -27647166 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chrX 149328576 149328596 -27645544 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chrX 149330103 149330125 -27644015 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chrX 149330924 149330945 -27643195 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1926 35 0 0 chrX 149330945 149331174 -27642966 - L1PA5 LINE L1 -13 6141 5913 2410 82 0 0 chrX 149332278 149332583 -27641557 + AluSx SINE Alu 1 305 -7 3524 21 7 0 chrX 149333065 149333484 -27640656 - L1PA3 LINE L1 -1 6154 5733 658 277 6 69 chrX 149333974 149334177 -27639963 + LTR16A LTR ERVL 25 284 -166 2458 66 3 0 chrX 149334177 149334480 -27639660 + AluY SINE Alu 1 304 -7 658 277 6 69 chrX 149334480 149334633 -27639507 + LTR16A LTR ERVL 284 445 -5 476 278 0 0 chrX 149335480 149335595 -27638545 + MER117 DNA MER1_type 31 145 -52 368 329 102 31 chrX 149335655 149335977 -27638163 + L2 LINE L2 2831 3175 -97 644 270 69 39 chrX 149336152 149336266 -27637874 - MIR SINE MIR -41 221 97 2229 159 18 3 chrX 149336266 149336649 -27637491 + MLT1B LTR MaLR 2 390 0 644 270 69 39 chrX 149336649 149336738 -27637402 - MIR SINE MIR -165 97 12 604 291 26 21 chrX 149336828 149337017 -27637123 + MIR3 SINE MIR 19 208 0 1909 186 16 21 chrX 149338023 149338411 -27635729 + MLT1B LTR MaLR 5 390 0 2021 154 9 3 chrX 149338437 149338761 -27635379 + MER7A DNA MER2_type 22 345 -1 461 336 13 13 chrX 149338761 149338910 -27635230 - L2 LINE L2 -17 3255 3107 285 334 84 14 chrX 149339154 149339504 -27634636 - L2 LINE L2 -614 2700 2266 270 236 42 0 chrX 149340775 149340847 -27633293 - MIR SINE MIR -111 151 77 267 224 0 0 chrX 149340874 149340932 -27633208 - MER94 DNA DNA -76 58 1 206 234 21 0 chrX 149340933 149340980 -27633160 + L2 LINE L2 3262 3309 -4 288 111 0 0 chrX 149341409 149341454 -27632686 + (TG)n Simple_repeat Simple_repeat 1 45 0 351 127 0 0 chrX 149341454 149341517 -27632623 + (GA)n Simple_repeat Simple_repeat 2 64 0 21 71 0 0 chrX 149341874 149341916 -27632224 + AT_rich Low_complexity Low_complexity 1 42 0 483 63 0 0 chrX 149344770 149344833 -27629307 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 228 224 0 0 chrX 149345441 149345490 -27628650 + (TG)n Simple_repeat Simple_repeat 2 50 0 875 73 37 18 chrX 149345648 149345812 -27628328 + (TTTC)n Simple_repeat Simple_repeat 4 170 0 366 42 0 0 chrX 149345812 149345860 -27628280 + (CA)n Simple_repeat Simple_repeat 1 48 0 455 244 73 0 chrX 149346173 149346296 -27627844 - MIR SINE MIR -64 198 67 249 315 93 19 chrX 149346722 149346830 -27627310 + L2 LINE L2 3178 3293 -20 351 341 137 40 chrX 149350163 149350412 -27623728 + L2 LINE L2 2403 2675 -639 407 347 88 58 chrX 149350671 149350965 -27623175 + L2 LINE L2 2970 3272 0 2287 59 45 0 chrX 149351051 149351339 -27622801 + AluY SINE Alu 1 301 -10 1329 234 59 9 chrX 149353075 149353396 -27620744 + MER58B DNA MER1_type 1 337 -4 1200 205 133 40 chrX 149353740 149354160 -27619980 + MLT1C LTR MaLR 7 465 -2 354 269 56 45 chrX 149354908 149355079 -27619061 + MIR SINE MIR 27 207 -55 236 346 134 0 chrX 149355866 149355993 -27618147 - MIR3 SINE MIR -21 187 44 2270 134 34 17 chrX 149357641 149357999 -27616141 + THE1B LTR MaLR 1 364 0 11792 89 8 1 chrX 149358001 149359566 -27614574 + THE1B-int LTR MaLR 3 1579 -1 2202 142 31 17 chrX 149359567 149359926 -27614214 + THE1B LTR MaLR 1 364 0 2194 100 0 0 chrX 149360765 149361092 -27613048 - AluSc SINE Alu 0 327 1 1118 327 48 45 chrX 149362657 149363416 -27610724 - L2 LINE L2 0 3272 2503 245 290 61 53 chrX 149366984 149367115 -27607025 - L2 LINE L2 -1120 2194 2063 217 411 37 0 chrX 149368380 149368487 -27605653 + L2 LINE L2 3154 3264 -8 256 192 10 113 chrX 149370198 149370312 -27603828 + MIR SINE MIR 34 133 -75 2815 0 0 3 chrX 149370597 149370903 -27603237 + AluYa5 SINE Alu 1 305 -6 311 188 47 0 chrX 149370969 149371033 -27603107 + MIR SINE MIR 172 238 -24 2128 111 35 0 chrX 149371822 149372111 -27602029 + AluSx SINE Alu 1 299 -13 625 316 136 59 chrX 149372591 149373940 -27600200 + L2 LINE L2 1382 2835 -479 396 297 85 0 chrX 149373975 149374093 -27600047 + L2 LINE L2 3141 3268 -4 2381 87 6 6 chrX 149378806 149379118 -27595022 - AluSq SINE Alu -1 312 1 276 319 21 50 chrX 149379188 149379329 -27594811 - MIR3 SINE MIR -61 147 11 492 278 67 33 chrX 149379533 149379713 -27594427 - MIR3 SINE MIR -12 196 11 23 68 0 0 chrX 149380038 149380082 -27594058 + AT_rich Low_complexity Low_complexity 1 44 0 1814 189 2 25 chrX 149381071 149381478 -27592662 - L1MB7 LINE L1 -7 6177 5780 209 413 30 12 chrX 149381925 149382092 -27592048 + MIR SINE MIR 20 189 -73 473 277 0 8 chrX 149382453 149382572 -27591568 + MER5B DNA MER1_type 4 121 -57 688 265 57 53 chrX 149382842 149383087 -27591053 - MIR SINE MIR -2 260 15 227 238 0 0 chrX 149384603 149384645 -27589495 + polypyrimidine Low_complexity Low_complexity 1 42 0 1639 195 13 63 chrX 149385381 149385775 -27588365 + MLT1C LTR MaLR 1 374 -93 341 392 45 40 chrX 149386199 149386421 -27587719 - L2 LINE L2 -4 3268 3046 405 319 29 75 chrX 149388172 149388413 -27585727 - MIR SINE MIR -29 233 4 1446 138 80 22 chrX 149388576 149388844 -27585296 + MSTA LTR MaLR 79 385 -43 1796 115 71 47 chrX 149388844 149389209 -27584931 + THE1C LTR MaLR 1 374 -1 1446 138 80 22 chrX 149389209 149389256 -27584884 + MSTA LTR MaLR 385 428 0 253 290 0 0 chrX 149389389 149389458 -27584682 + MIR SINE MIR 63 131 -131 1048 151 112 49 chrX 149389572 149389876 -27584264 + MER33 DNA MER1_type 1 323 -1 203 229 21 0 chrX 149391364 149391412 -27582728 + (TA)n Simple_repeat Simple_repeat 2 50 0 2299 169 16 44 chrX 149391867 149392363 -27581777 - MLT1D LTR MaLR -23 482 1 214 313 0 16 chrX 149392370 149392434 -27581706 + L2 LINE L2 3227 3289 -24 485 293 11 23 chrX 149393282 149393456 -27580684 - MIR3 SINE MIR -31 177 6 704 283 29 0 chrX 149394477 149394650 -27579490 + MIR3 SINE MIR 30 207 -1 2265 234 39 13 chrX 149395461 149396005 -27578135 + REP3 LTR ERV 5 562 0 220 335 79 46 chrX 149397262 149397566 -27576574 + L3 LINE CR1 1047 1360 -217 23 0 0 0 chrX 149397907 149397930 -27576210 + AT_rich Low_complexity Low_complexity 1 23 0 354 276 0 31 chrX 149398125 149398223 -27575917 - MIR3 SINE MIR -6 202 108 261 0 0 0 chrX 149398266 149398295 -27575845 + (CA)n Simple_repeat Simple_repeat 2 30 0 215 281 47 0 chrX 149399010 149399074 -27575066 + L2 LINE L2 1932 1998 -1316 21 71 0 0 chrX 149399075 149399117 -27575023 + AT_rich Low_complexity Low_complexity 1 42 0 591 167 0 9 chrX 149399117 149399231 -27574909 - L1MB4 LINE L1 -8 6172 6060 420 328 92 57 chrX 149399235 149399888 -27574252 + L2 LINE L2 1983 2658 -656 1563 196 16 36 chrX 149400163 149400469 -27573671 - AluJo SINE Alu -12 300 1 1169 213 102 44 chrX 149400479 149400912 -27573228 + MLT1C LTR MaLR 10 467 0 21 57 0 0 chrX 149403683 149403718 -27570422 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chrX 149403776 149403796 -27570344 + (TA)n Simple_repeat Simple_repeat 2 21 0 230 224 94 24 chrX 149403903 149403988 -27570152 - L2 LINE L2 -2 3270 3180 280 337 12 0 chrX 149404165 149404251 -27569889 - MIR3 SINE MIR -41 167 81 1847 176 22 51 chrX 149404784 149405193 -27568947 + MLT2C1 LTR ERVL 1 397 0 568 233 55 7 chrX 149405520 149405666 -27568474 + L2 LINE L2 3161 3313 0 246 273 34 80 chrX 149406703 149406791 -27567349 - MIR SINE MIR -85 123 40 26 0 0 0 chrX 149406853 149406879 -27567261 + AT_rich Low_complexity Low_complexity 1 26 0 2411 120 25 3 chrX 149408811 149409178 -27564962 + THE1C LTR MaLR 1 375 0 247 210 0 16 chrX 149409314 149409376 -27564764 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 7645 23 2 0 chrX 149409748 149410820 -27563320 + L1PA4 LINE L1 5075 6152 -3 294 237 25 37 chrX 149411071 149411167 -27562973 - MIR SINE MIR -60 148 49 1175 66 11 17 chrX 149412527 149412594 -27561546 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 1175 66 11 17 chrX 149412594 149412775 -27561365 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 836 145 158 0 chrX 149415855 149416007 -27558133 + MLT1D LTR MaLR 330 505 0 24 32 0 0 chrX 149416527 149416558 -27557582 + AT_rich Low_complexity Low_complexity 1 31 0 188 402 16 16 chrX 149417028 149417150 -27556990 + MIR3 SINE MIR 4 125 -83 356 228 59 20 chrX 149417273 149417374 -27556766 - MIR SINE MIR -55 207 103 775 198 68 82 chrX 149418662 149418869 -27555271 + AluJo SINE Alu 85 288 -24 22 0 0 0 chrX 149418869 149418891 -27555249 + AT_rich Low_complexity Low_complexity 1 22 0 2524 110 6 3 chrX 149419769 149420132 -27554008 - THE1B LTR MaLR 0 364 1 243 223 56 40 chrX 149420234 149420357 -27553783 + MIR SINE MIR 74 205 -3 1474 224 202 28 chrX 149420899 149421558 -27552582 - L1MD3 LINE L1 -16 7979 7436 186 103 0 0 chrX 149421558 149421587 -27552553 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1474 224 202 28 chrX 149421587 149422133 -27552007 - L1MD3 LINE L1 -559 7436 6470 444 295 64 36 chrX 149422206 149422844 -27551296 - L1M4 LINE L1 -2607 3539 2884 883 186 0 12 chrX 149422850 149423011 -27551129 + FRAM SINE Alu 11 169 -7 207 145 40 53 chrX 149423390 149423466 -27550674 + (TAAA)n Simple_repeat Simple_repeat 3 77 0 249 336 56 36 chrX 149423551 149424072 -27550068 + HAL1b LINE L1 75 605 -743 396 264 66 81 chrX 149424484 149424681 -27549459 - MIR SINE MIR -13 249 56 1037 286 105 50 chrX 149424742 149425454 -27548686 + L2 LINE L2 2449 3199 -114 652 279 19 10 chrX 149426320 149426528 -27547612 + L2 LINE L2 2763 2972 -342 2632 231 84 60 chrX 149431322 149432402 -27541738 - HAL1 LINE L1 -4 2503 1398 1686 227 87 18 chrX 149432501 149432950 -27541190 - HAL1 LINE L1 -2012 495 16 799 282 35 31 chrX 149433448 149433703 -27540437 + MIR SINE MIR 7 262 0 376 282 26 70 chrX 149433691 149433847 -27540293 - MIR SINE MIR -100 162 14 * 471 247 36 42 chrX 149433849 149434015 -27540125 - MER5B DNA MER1_type 0 178 14 22 35 0 0 chrX 149434883 149434912 -27539228 + AT_rich Low_complexity Low_complexity 1 29 0 403 253 45 68 chrX 149435844 149436065 -27538075 - MIR SINE MIR -31 231 16 276 293 24 81 chrX 149440301 149440424 -27533716 + L2 LINE L2 3193 3308 -5 308 220 22 44 chrX 149440429 149440520 -27533620 + GA-rich Low_complexity Low_complexity 2 90 0 346 251 59 11 chrX 149440523 149440646 -27533494 + MIR3 SINE MIR 75 207 -1 724 242 11 51 chrX 149441182 149441419 -27532721 + MIR SINE MIR 38 261 -1 2470 64 0 6 chrX 149441528 149441839 -27532301 - AluY SINE Alu -2 309 1 789 274 18 13 chrX 149441897 149442123 -27532017 - MIR SINE MIR -3 259 33 1993 82 64 14 chrX 149442558 149442839 -27531301 + AluSc SINE Alu 1 295 -14 315 197 0 0 chrX 149443173 149443234 -27530906 + L1MC1 LINE L1 5821 5881 -1927 * 1221 223 19 54 chrX 149443214 149443862 -27530278 + L1MC4 LINE L1 6107 6616 -1192 270 152 0 0 chrX 149443871 149443917 -27530223 + L1MC1 LINE L1 6022 6067 -266 694 120 0 19 chrX 149443920 149444028 -27530112 + L1MC1 LINE L1 6228 6333 0 454 138 25 0 chrX 149444028 149444108 -27530032 + L1MC4 LINE L1 7164 7245 -797 4368 176 12 34 chrX 149444117 149445006 -27529134 - L1MB7 LINE L1 -9 6175 5306 2945 159 50 75 chrX 149445004 149445708 -27528432 + L1MC4 LINE L1 7233 7918 -124 * 705 235 0 0 chrX 149445716 149445895 -27528245 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 675 190 25 17 chrX 149445914 149446275 -27527865 + (TATATG)n Simple_repeat Simple_repeat 1 364 0 235 281 22 0 chrX 149446291 149446380 -27527760 + L1MC4 LINE L1 6615 6705 -1337 377 211 61 43 chrX 149446397 149446536 -27527604 + L1MC4 LINE L1 7883 7992 -3 231 204 0 0 chrX 149446630 149446679 -27527461 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 326 336 84 72 chrX 149448789 149449039 -27525101 - L2 LINE L2 -16 3256 3004 312 27 0 0 chrX 149450579 149450616 -27523524 + (CA)n Simple_repeat Simple_repeat 1 37 0 278 138 75 0 chrX 149451505 149451585 -27522555 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 387 0 0 0 chrX 149452410 149452453 -27521687 + (CA)n Simple_repeat Simple_repeat 1 43 0 312 318 32 32 chrX 149452517 149452671 -27521469 + MIR SINE MIR 101 254 -8 543 176 59 25 chrX 149454296 149454415 -27519725 + MER97b DNA MER1_type? 108 230 -823 3915 185 44 36 chrX 149454464 149455447 -27518693 - L1MB7 LINE L1 -9 6175 5173 1708 166 60 89 chrX 149456305 149456786 -27517354 + MLT1C LTR MaLR 1 467 0 291 217 0 0 chrX 149457594 149457654 -27516486 - L2 LINE L2 0 3313 3254 191 36 36 0 chrX 149457924 149457952 -27516188 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 240 149 0 0 chrX 149458173 149458220 -27515920 + (TCC)n Simple_repeat Simple_repeat 2 48 0 210 118 0 0 chrX 149458218 149458252 -27515888 + (CAT)n Simple_repeat Simple_repeat 3 36 0 * 476 157 12 0 chrX 149458254 149458337 -27515803 - MIR SINE MIR -110 152 69 479 312 16 101 chrX 149460285 149460532 -27513608 - L2 LINE L2 -10 3262 3037 663 298 46 29 chrX 149461115 149461353 -27512787 + MIR SINE MIR 8 249 -13 22 0 0 0 chrX 149461465 149461487 -27512653 + AT_rich Low_complexity Low_complexity 1 22 0 379 319 24 24 chrX 149462621 149462790 -27511350 - L2 LINE L2 -179 3093 2925 316 353 34 17 chrX 149463471 149463590 -27510550 - L2 LINE L2 -9 3263 3143 903 272 134 50 chrX 149463798 149464596 -27509544 + L2 LINE L2 2412 3269 -44 221 309 0 0 chrX 149464626 149464681 -27509459 + GA-rich Low_complexity Low_complexity 2 56 0 202 118 0 29 chrX 149466203 149466237 -27507903 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 271 123 35 0 chrX 149466563 149466620 -27507520 - MER96B DNA MER1_type? -65 352 294 489 99 0 49 chrX 149466627 149466708 -27507432 + MER96B DNA MER1_type? 191 267 -150 3962 77 26 0 chrX 149466714 149467260 -27506880 - L1PA7 LINE L1 -856 5290 4729 6814 46 5 8 chrX 149467260 149468119 -27506021 + L1PA7 LINE L1 5293 6151 -3 348 182 0 11 chrX 149468127 149468215 -27505925 + MER96B DNA MER1_type? 266 352 -65 562 270 96 22 chrX 149469379 149469609 -27504531 + MIR SINE MIR 14 260 -2 362 162 120 2 chrX 149469699 149469779 -27504361 + MSTD LTR MaLR 1 75 -321 202 227 0 0 chrX 149469802 149469846 -27504294 + CT-rich Low_complexity Low_complexity 2 45 0 917 154 25 6 chrX 149469880 149470042 -27504098 + MSTD LTR MaLR 225 389 -7 925 277 24 52 chrX 149470111 149470646 -27503494 + MARNA DNA Mariner 9 528 -58 602 303 49 5 chrX 149472256 149472441 -27501699 - MIR3 SINE MIR 0 208 16 220 310 0 0 chrX 149472542 149472600 -27501540 - L2 LINE L2 0 3313 3256 470 294 14 21 chrX 149473038 149473181 -27500959 + L2 LINE L2 3172 3313 0 428 287 20 75 chrX 149473187 149473427 -27500713 - MIR SINE MIR -31 231 2 898 229 51 0 chrX 149473908 149474161 -27499979 + Charlie5 DNA MER1_type 2359 2624 0 351 273 64 0 chrX 149474162 149474272 -27499868 + L1ME3 LINE L1 6046 6162 0 3575 161 22 0 chrX 149475140 149475732 -27498408 - MER77 LTR ERV1 0 605 1 306 125 0 0 chrX 149475866 149475914 -27498226 + (T)n Simple_repeat Simple_repeat 1 48 0 860 226 37 28 chrX 149476312 149476529 -27497611 + MER20 DNA MER1_type 1 219 0 298 205 16 98 chrX 149476560 149476682 -27497458 - L1ME4a LINE L1 -60 6061 5950 355 100 0 0 chrX 149476694 149476744 -27497396 - Tigger5 DNA MER2_type -32 2291 2242 395 167 0 0 chrX 149476752 149476818 -27497322 - Tigger5 DNA MER2_type -2226 97 32 672 260 98 34 chrX 149477805 149478070 -27496070 + L3b LINE CR1 1103 1384 -199 182 268 70 42 chrX 149478314 149478385 -27495755 + L3 LINE CR1 1494 1566 -11 2302 104 0 0 chrX 149478662 149478974 -27495166 + AluSx SINE Alu 1 312 0 202 323 21 31 chrX 149479764 149479860 -27494280 + MIR SINE MIR 142 236 -26 257 248 141 58 chrX 149480342 149480463 -27493677 + L2 LINE L2 3165 3295 -18 684 200 0 0 chrX 149481511 149481641 -27492499 + MER5A DNA MER1_type 32 161 -28 248 232 0 18 chrX 149481651 149481707 -27492433 + MER5B DNA MER1_type 124 178 0 423 303 0 0 chrX 149481712 149481844 -27492296 + MER94 DNA DNA 3 134 0 335 255 90 35 chrX 149482107 149482252 -27491888 + MIR3 SINE MIR 2 154 -54 1383 185 59 15 chrX 149482259 149482599 -27491541 + L1MD3 LINE L1 6940 7294 -701 183 42 0 0 chrX 149482957 149482981 -27491159 + (GA)n Simple_repeat Simple_repeat 2 25 0 487 294 65 37 chrX 149483794 149484039 -27490101 + MIR SINE MIR 5 256 -6 354 262 10 19 chrX 149484189 149484292 -27489848 - MER5A DNA MER1_type -84 105 4 300 259 35 52 chrX 149485429 149485545 -27488595 + MIR SINE MIR 50 163 -99 22 0 0 0 chrX 149487712 149487734 -27486406 + AT_rich Low_complexity Low_complexity 1 22 0 208 146 0 55 chrX 149487767 149487822 -27486318 + (GAGAA)n Simple_repeat Simple_repeat 4 55 0 239 119 0 56 chrX 149487951 149487987 -27486153 - MIR SINE MIR -56 154 115 348 322 122 11 chrX 149487988 149488213 -27485927 + MIR SINE MIR 3 249 -13 21 0 0 0 chrX 149488317 149488338 -27485802 + AT_rich Low_complexity Low_complexity 1 21 0 646 256 99 29 chrX 149488509 149488751 -27485389 + MIR SINE MIR 1 259 -3 676 253 28 11 chrX 149488973 149489151 -27484989 + MER5A DNA MER1_type 9 189 0 244 227 0 0 chrX 149489992 149490036 -27484104 + L2 LINE L2 3216 3259 -13 23 33 0 0 chrX 149490360 149490390 -27483750 + AT_rich Low_complexity Low_complexity 1 30 0 1864 86 39 8 chrX 149491169 149491424 -27482716 - AluSc SINE Alu -13 296 34 305 280 19 28 chrX 149491516 149491623 -27482517 - MER5B DNA MER1_type -12 166 61 32 26 0 0 chrX 149491759 149491798 -27482342 + AT_rich Low_complexity Low_complexity 1 39 0 548 181 24 24 chrX 149491952 149492079 -27482061 + MER53 DNA DNA 1 127 -62 601 290 6 27 chrX 149492264 149492447 -27481693 - MIR SINE MIR -80 182 4 524 319 116 9 chrX 149492714 149492930 -27481210 - MIR SINE MIR 0 262 24 211 267 50 0 chrX 149493061 149493121 -27481019 - MIR SINE MIR -124 138 76 2366 79 0 0 chrX 149493805 149494097 -27480043 + AluY SINE Alu 1 292 -19 237 65 0 0 chrX 149494519 149494550 -27479590 + (CA)n Simple_repeat Simple_repeat 2 32 0 237 135 0 0 chrX 149495809 149495854 -27478286 - MIR SINE MIR -56 152 107 324 337 0 0 chrX 149497193 149497291 -27476849 - MIR SINE MIR -10 252 155 411 291 196 16 chrX 149497296 149497485 -27476655 - MIR SINE MIR -26 236 14 256 178 41 14 chrX 149499681 149499754 -27474386 - L1MC4 LINE L1 0 8042 7968 3191 187 14 20 chrX 149499761 149500450 -27473690 - L1MC4 LINE L1 -165 7877 7193 2030 194 73 46 chrX 149500449 149501016 -27473124 + L1MC4 LINE L1 6390 7006 -1036 * 621 170 9 0 chrX 149501038 149501150 -27472990 + L1MD1 LINE L1 6109 6221 -21 386 149 207 25 chrX 149501148 149501269 -27472871 + L1MC4 LINE L1 6987 7129 -913 * 306 0 0 0 chrX 149503239 149503273 -27470867 + (CA)n Simple_repeat Simple_repeat 1 34 0 * 375 23 0 0 chrX 149503272 149503316 -27470824 + (GA)n Simple_repeat Simple_repeat 2 45 0 336 24 0 0 chrX 149505981 149506022 -27468118 + (TG)n Simple_repeat Simple_repeat 1 41 0 214 211 0 28 chrX 149507652 149507723 -27466417 + (TA)n Simple_repeat Simple_repeat 1 69 0 599 207 25 8 chrX 149508657 149508778 -27465362 - L3 LINE CR1 -3 1574 1452 2489 55 0 19 chrX 149509352 149509661 -27464479 - AluY SINE Alu -8 303 1 282 192 0 0 chrX 149510302 149510354 -27463786 + L2 LINE L2 3262 3313 0 746 287 26 0 chrX 149510651 149510846 -27463294 + MIR SINE MIR 45 244 -18 603 267 97 73 chrX 149511219 149511590 -27462550 + L3 LINE CR1 1197 1576 -1 23 0 0 0 chrX 149513361 149513384 -27460756 + AT_rich Low_complexity Low_complexity 1 23 0 420 360 41 16 chrX 149515591 149515808 -27458332 + MIR SINE MIR 16 236 -26 445 302 0 8 chrX 149516548 149516677 -27457463 - L2 LINE L2 0 3313 3186 361 259 50 15 chrX 149516946 149517076 -27457064 + MIR SINE MIR 16 154 -54 198 308 17 86 chrX 149518251 149518349 -27455791 + L2 LINE L2 3195 3284 -29 684 261 23 20 chrX 149518349 149518550 -27455590 + MIR3 SINE MIR 2 205 -3 214 298 18 0 chrX 149520319 149520376 -27453764 - L2 LINE L2 -6 3307 3250 458 283 13 46 chrX 149520486 149520638 -27453502 + MIR SINE MIR 70 216 -46 23 0 0 0 chrX 149520799 149520822 -27453318 + AT_rich Low_complexity Low_complexity 1 23 0 435 274 15 22 chrX 149521236 149521371 -27452769 + MIR SINE MIR 111 244 -18 345 24 0 0 chrX 149521411 149521453 -27452687 + (CA)n Simple_repeat Simple_repeat 2 43 0 231 36 0 0 chrX 149523027 149523055 -27451085 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 539 334 177 33 chrX 149526308 149527065 -27447075 - L1M2 LINE L1 -5486 1363 498 251 233 83 0 chrX 149527911 149527971 -27446169 + MIR SINE MIR 69 133 -75 1887 123 30 33 chrX 149530569 149530869 -27443271 - AluSx SINE Alu -13 299 1 304 236 180 22 chrX 149530883 149530972 -27443168 + L2 LINE L2 3184 3286 -27 840 269 24 20 chrX 149531372 149531621 -27442519 - MIR SINE MIR -10 252 3 186 333 126 0 chrX 149531687 149531774 -27442366 - MIR SINE MIR -55 153 56 220 268 186 21 chrX 149532207 149532304 -27441836 + MIR3 SINE MIR 95 207 -1 216 200 0 40 chrX 149533835 149533885 -27440255 - MIR3 SINE MIR -10 198 151 5480 120 17 44 chrX 149535440 149536479 -27437661 - L1MA4 LINE L1 -8 6292 5282 1978 190 16 45 chrX 149536481 149536971 -27437169 + L1 LINE L1 4849 5324 -822 198 351 67 15 chrX 149537013 149537147 -27436993 - MIR3 SINE MIR -65 143 3 255 200 90 90 chrX 149537410 149537555 -27436585 + L1ME4a LINE L1 5961 6105 -16 31 0 0 0 chrX 149537561 149537592 -27436548 + AT_rich Low_complexity Low_complexity 1 31 0 1970 237 90 15 chrX 149538149 149538749 -27435391 - L1MC4a LINE L1 -10 7798 7154 280 103 0 0 chrX 149538750 149538789 -27435351 - MLT2D LTR ERVL -375 39 1 361 292 88 0 chrX 149538790 149538903 -27435237 - MIR SINE MIR -127 135 13 222 337 41 0 chrX 149539286 149539384 -27434756 + L3 LINE CR1 639 740 -837 2300 137 16 31 chrX 149539404 149539827 -27434313 - Tigger2 DNA MER2_type -3 2715 2299 342 174 0 0 chrX 149539851 149539920 -27434220 - Tigger2 DNA MER2_type -367 2351 2283 466 104 0 0 chrX 149539921 149539988 -27434152 - Tigger2 DNA MER2_type -2651 67 1 257 197 0 5 chrX 149540263 149540320 -27433820 + MIR SINE MIR 66 122 -86 425 132 0 0 chrX 149540407 149540475 -27433665 - MADE1 DNA Mariner -12 68 1 6357 138 37 2 chrX 149540596 149541826 -27432314 - L1MC1 LINE L1 0 6333 5052 781 197 0 0 chrX 149541837 149541969 -27432171 - FLAM_A SINE Alu -1 132 1 813 229 34 0 chrX 149541969 149542205 -27431935 - L1MD3 LINE L1 -833 7162 6919 189 107 0 0 chrX 149542212 149542240 -27431900 + (T)n Simple_repeat Simple_repeat 1 28 0 2638 91 8 3 chrX 149542242 149542616 -27431524 - L1PB1 LINE L1 0 6151 5776 332 207 0 12 chrX 149542624 149542706 -27431434 + (TA)n Simple_repeat Simple_repeat 2 82 0 510 121 15 11 chrX 149542706 149542823 -27431317 - L1PA8A LINE L1 -340 5791 5674 * 3562 92 25 6 chrX 149542814 149543401 -27430739 - L1P5 LINE L1 -359 5792 5206 1014 260 46 25 chrX 149543401 149543724 -27430416 - L1MD3 LINE L1 -1020 6975 5149 5185 145 16 5 chrX 149543813 149544812 -27429328 - L1PA16 LINE L1 -1 6165 5159 323 266 84 36 chrX 149544822 149545236 -27428904 - L1M4 LINE L1 -860 5286 4853 560 282 50 15 chrX 149545280 149545617 -27428523 - L1M4 LINE L1 -2211 3935 3587 591 294 92 95 chrX 149545639 149546317 -27427823 - L1M4 LINE L1 -2582 3564 2890 2319 115 0 0 chrX 149546317 149546622 -27427518 + AluSx SINE Alu 1 305 -7 591 294 92 95 chrX 149546622 149547114 -27427026 - L1M4 LINE L1 -3256 2890 2398 3070 220 50 9 chrX 149547122 149548046 -27426094 + L1M4 LINE L1 2227 3188 -2958 368 316 58 35 chrX 149548314 149548795 -27425345 - HAL1b LINE L1 -768 580 89 450 248 24 112 chrX 149550458 149550572 -27423568 - MLT1L LTR MaLR -94 514 392 468 0 0 0 chrX 149550572 149550624 -27423516 + (TG)n Simple_repeat Simple_repeat 1 52 0 450 248 24 112 chrX 149550624 149550715 -27423425 - MLT1L LTR MaLR -216 392 230 465 295 8 8 chrX 149551838 149551967 -27422173 - MIR SINE MIR -63 145 17 2286 55 0 4 chrX 149552164 149552470 -27421670 - AluY SINE Alu 0 311 13 576 297 28 4 chrX 149554777 149554963 -27419177 + MIR SINE MIR 4 188 -62 932 220 116 61 chrX 149555207 149555553 -27418587 - MLT1A1 LTR MaLR 0 365 1 760 91 9 0 chrX 149555902 149556012 -27418128 - MSTB1 LTR MaLR -4 428 318 565 309 6 6 chrX 149556012 149556177 -27417963 - MIR SINE MIR -96 166 2 226 211 19 0 chrX 149556750 149556802 -27417338 + L2 LINE L2 3258 3310 -3 251 262 149 44 chrX 149558597 149558872 -27415268 + L2 LINE L2 1795 2098 -1216 269 357 52 35 chrX 149559512 149559769 -27414371 + L2 LINE L2 2791 3047 -225 567 270 141 0 chrX 149559896 149560059 -27414081 + MER5A DNA MER1_type 4 189 0 281 301 41 41 chrX 149560308 149560431 -27413709 + L2 LINE L2 3177 3299 -14 270 0 0 0 chrX 149560432 149560462 -27413678 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 403 297 210 18 chrX 149562776 149562995 -27411145 + MIR SINE MIR 2 262 0 266 194 60 0 chrX 149563460 149563527 -27410613 - MER103 DNA DNA -7 159 89 611 333 16 8 chrX 149563632 149563875 -27410265 - MLT1I LTR MaLR -164 245 1 188 188 275 0 chrX 149563875 149563944 -27410196 + MIR SINE MIR 113 200 -62 990 197 30 0 chrX 149565010 149565213 -27408927 - MER6B DNA MER2_type -1 209 1 2007 212 44 25 chrX 149565449 149566080 -27408060 + L1MEc LINE L1 715 1357 -5039 809 234 50 10 chrX 149566081 149566282 -27407858 - L2 LINE L2 -687 2627 2419 197 276 43 52 chrX 149568508 149568624 -27405516 - L2 LINE L2 -314 2958 2844 207 316 149 9 chrX 149568946 149569060 -27405080 - L2 LINE L2 -1 3312 3183 189 309 71 71 chrX 149569130 149569256 -27404884 + L2 LINE L2 3177 3302 -11 379 331 60 8 chrX 149569533 149569666 -27404474 + L2 LINE L2 3133 3272 0 192 310 64 90 chrX 149569692 149570013 -27404127 - L2 LINE L2 -191 3081 2769 359 263 47 52 chrX 149570029 149570075 -27404065 - MIR SINE MIR -50 212 167 1072 182 5 0 chrX 149570075 149570262 -27403878 + MER5A DNA MER1_type 2 189 0 359 263 47 52 chrX 149570262 149570419 -27403721 - MIR SINE MIR -95 167 15 229 321 79 36 chrX 149570465 149570605 -27403535 - L2 LINE L2 -575 2739 2594 208 184 0 0 chrX 149570613 149570651 -27403489 - MIR SINE MIR -112 150 113 839 126 28 7 chrX 149571245 149571388 -27402752 - L1MA9 LINE L1 0 6312 6167 509 324 73 12 chrX 149571565 149571895 -27402245 - L1ME LINE L1 -429 5733 5384 794 305 78 48 chrX 149571898 149572374 -27401766 + L2 LINE L2 2130 2619 -695 409 293 98 8 chrX 149572415 149572538 -27401602 + L2 LINE L2 3136 3269 -3 284 322 105 35 chrX 149573225 149573396 -27400744 + MER5A DNA MER1_type 1 183 -6 2412 91 0 0 chrX 149573781 149574089 -27400051 - AluY SINE Alu -3 308 1 391 48 106 0 chrX 149574540 149574644 -27399496 + (TA)n Simple_repeat Simple_repeat 1 115 0 351 0 0 0 chrX 149575096 149575135 -27399005 + (CA)n Simple_repeat Simple_repeat 2 40 0 393 22 0 0 chrX 149575993 149576039 -27398101 + (CA)n Simple_repeat Simple_repeat 2 47 0 1801 175 25 64 chrX 149576156 149576562 -27397578 + MLT1B LTR MaLR 1 390 0 429 235 49 10 chrX 149576572 149576674 -27397466 - L2 LINE L2 0 3313 3208 684 269 130 5 chrX 149576685 149576901 -27397239 + MIR SINE MIR 20 262 0 443 343 54 62 chrX 149576919 149577311 -27396829 - L2 LINE L2 -136 3177 2791 198 338 0 15 chrX 149577344 149577412 -27396728 - MER5A DNA MER1_type -30 159 93 277 271 0 128 chrX 149577418 149577551 -27396589 - L2 LINE L2 -29 3284 3169 967 148 0 27 chrX 149577556 149577705 -27396435 + FRAM SINE Alu 1 137 -39 1126 203 119 35 chrX 149577841 149578151 -27395989 - L2 LINE L2 -1054 2260 1925 3254 224 88 8 chrX 149578151 149578981 -27395159 - L2 LINE L2 -1777 1537 642 245 275 25 0 chrX 149579064 149579144 -27394996 - L2 LINE L2 -511 2803 2722 * 303 313 0 0 chrX 149579143 149579223 -27394917 - MIR SINE MIR -112 150 71 280 291 64 9 chrX 149580716 149580826 -27393314 + L2 LINE L2 3127 3242 -30 183 284 138 60 chrX 149581955 149582071 -27392069 + L2 LINE L2 3148 3272 0 196 328 0 0 chrX 149582133 149582194 -27391946 + MER5B DNA MER1_type 12 72 -106 2248 173 27 27 chrX 149582246 149582726 -27391414 - L1MB7 LINE L1 -54 6130 5651 281 278 30 26 chrX 149582768 149582884 -27391256 - MIR SINE MIR -77 131 13 2339 137 0 6 chrX 149583773 149584138 -27390002 + MLT1A1 LTR MaLR 1 363 -2 201 226 38 19 chrX 149584198 149584251 -27389889 + L2 LINE L2 3219 3272 0 200 186 17 0 chrX 149584541 149584600 -27389540 + GA-rich Low_complexity Low_complexity 1 60 0 285 217 87 0 chrX 149585438 149585507 -27388633 - L2 LINE L2 -1 3312 3238 180 254 34 17 chrX 149587142 149587201 -27386939 - L2 LINE L2 -259 3054 2995 440 261 174 19 chrX 149587209 149587370 -27386770 - MIR SINE MIR -14 248 63 498 339 68 24 chrX 149587435 149587686 -27386454 - L2 LINE L2 -337 2977 2716 269 348 22 53 chrX 149587691 149587918 -27386222 - L2 LINE L2 -752 2562 2343 1605 275 74 24 chrX 149587942 149588946 -27385194 + L2 LINE L2 2189 3309 -4 269 209 15 30 chrX 149589489 149589556 -27384584 - L2 LINE L2 -1037 2277 2212 518 345 146 13 chrX 149589932 149590398 -27383742 - L2 LINE L2 -1163 2151 1624 812 269 46 0 chrX 149590403 149590622 -27383518 - MIR SINE MIR -24 238 10 358 292 152 35 chrX 149590679 149591021 -27383119 - L2 LINE L2 -1768 1546 1165 425 243 29 0 chrX 149591031 149591134 -27383006 - MIR SINE MIR 0 262 157 311 346 28 58 chrX 149591189 149591382 -27382758 + L2 LINE L2 2470 2648 -666 2146 120 60 20 chrX 149591382 149591732 -27382408 + THE1B LTR MaLR 1 364 0 311 346 28 58 chrX 149591732 149591899 -27382241 + L2 LINE L2 2648 2819 -495 185 210 48 65 chrX 149592126 149592188 -27381952 + L2 LINE L2 2335 2395 -919 3004 232 70 13 chrX 149592211 149593201 -27380939 - L1ME3 LINE L1 -35 6127 5078 849 330 59 43 chrX 149593213 149593993 -27380147 + L2 LINE L2 2462 3248 -24 257 0 30 0 chrX 149593993 149594026 -27380114 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 429 301 92 24 chrX 149594836 149595042 -27379098 - L2 LINE L2 0 3313 3094 315 238 71 27 chrX 149595094 149595208 -27378932 - MLT1L LTR MaLR -93 521 305 919 219 40 18 chrX 149595291 149595515 -27378625 + MER69 DNA AcHobo 1 229 -2297 843 234 48 0 chrX 149595525 149595734 -27378406 + MER69 DNA AcHobo 426 644 -582 2078 218 94 12 chrX 149595769 149596461 -27377679 + MER69 DNA AcHobo 1777 2525 -1 685 276 61 0 chrX 149596520 149596716 -27377424 + L2 LINE L2 1121 1328 -1986 2702 160 11 4 chrX 149596716 149597167 -27376973 + MLT2B2 LTR ERVL 1 454 -61 581 83 71 6 chrX 149597212 149597380 -27376760 + (TA)n Simple_repeat Simple_repeat 2 180 0 27 0 0 0 chrX 149597380 149597407 -27376733 + AT_rich Low_complexity Low_complexity 1 27 0 226 108 27 0 chrX 149597407 149597444 -27376696 + MLT2B2 LTR ERVL 478 515 0 671 246 277 4 chrX 149597444 149597704 -27376436 + L2 LINE L2 1324 1654 -1660 12565 34 3 3 chrX 149597806 149600161 -27373979 + L1PA4 LINE L1 3742 6096 -59 1342 88 28 18 chrX 149700166 149700383 -27273757 + L1MA3 LINE L1 6087 6305 0 221 222 37 19 chrX 149701427 149701481 -27272659 - L2 LINE L2 -8 3264 3210 * 885 288 9 0 chrX 149701448 149701663 -27272477 - MIR SINE MIR -23 239 23 490 229 8 53 chrX 149703689 149703820 -27270320 - L1MD3 LINE L1 -345 7650 7526 330 253 0 0 chrX 149703826 149703901 -27270239 + L2 LINE L2 3239 3313 0 662 268 50 92 chrX 149704571 149704888 -27269252 - L2 LINE L2 -1 3312 3009 431 270 11 48 chrX 149705726 149705915 -27268225 - L1MC5 LINE L1 -824 7137 6956 746 168 0 0 chrX 149705918 149706055 -27268085 - L1MC3 LINE L1 -13 7772 7636 1134 254 25 11 chrX 149706058 149706420 -27267720 + L1MCb LINE L1 780 1146 -4899 844 289 32 36 chrX 149706425 149706955 -27267185 + L1MC5 LINE L1 7400 7927 -34 792 312 145 52 chrX 149706978 149708198 -27265942 + L1 LINE L1 3374 4707 -1439 1057 184 68 93 chrX 149710698 149710838 -27263302 - MER50 LTR ERV1 0 734 592 207 0 0 0 chrX 149710838 149710861 -27263279 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1057 184 68 93 chrX 149710861 149710996 -27263144 - MER50 LTR ERV1 -142 592 465 2138 109 70 50 chrX 149710996 149711353 -27262787 - THE1B LTR MaLR 0 364 1 1057 184 68 93 chrX 149711353 149711386 -27262754 - MER50 LTR ERV1 -269 465 433 985 130 47 0 chrX 149711380 149711549 -27262591 - MER50 LTR ERV1 -505 229 53 * 290 192 0 0 chrX 149711589 149711641 -27262499 - MER50 LTR ERV1 -682 52 1 7981 183 19 64 chrX 149713179 149715018 -27259122 - MER52A LTR ERV1 0 1755 1 211 286 89 9 chrX 149715291 149715403 -27258737 - L2 LINE L2 -2 3311 3191 2524 67 13 0 chrX 149716213 149716512 -27257628 + AluSp SINE Alu 1 303 -10 486 288 102 23 chrX 149716514 149716729 -27257411 - MIR SINE MIR -11 251 20 16074 124 29 68 chrX 149717842 149719009 -27255131 + Tigger2 DNA MER2_type 1 1212 -1506 432 37 0 0 chrX 149719009 149719063 -27255077 + (TA)n Simple_repeat Simple_repeat 1 54 0 16074 124 29 68 chrX 149719063 149720724 -27253416 + Tigger2 DNA MER2_type 1212 2718 0 283 250 98 36 chrX 149720776 149720888 -27253252 + MLT1I LTR MaLR 19 137 -272 462 238 42 30 chrX 149722422 149722590 -27251550 - L1M4 LINE L1 -1511 4635 4466 5335 91 19 5 chrX 149723013 149723769 -27250371 + L1PB2 LINE L1 5386 6151 0 3342 80 7 22 chrX 149723982 149724433 -27249707 + MLT2A1 LTR ERVL 1 444 0 2702 97 5 5 chrX 149724519 149724889 -27249251 - THE1C LTR MaLR 0 375 6 1838 188 60 40 chrX 149724929 149725381 -27248759 - MLT1C LTR MaLR -5 462 2 181 273 0 0 chrX 149725812 149725856 -27248284 - L2 LINE L2 -3 3269 3226 303 266 0 32 chrX 149726161 149726255 -27247885 + L2 LINE L2 3179 3269 -3 195 271 33 57 chrX 149728711 149728833 -27245307 + MIR SINE MIR 19 137 -125 382 279 101 6 chrX 149729354 149729512 -27244628 - MIR SINE MIR -1 261 89 366 184 0 0 chrX 149730226 149730302 -27243838 + (CGG)n Simple_repeat Simple_repeat 2 77 0 335 235 67 34 chrX 149731196 149731315 -27242825 + L2 LINE L2 3141 3263 -9 208 211 197 0 chrX 149731354 149731425 -27242715 + MIR3 SINE MIR 83 167 -41 438 290 88 112 chrX 149732712 149733077 -27241063 + L2 LINE L2 2915 3270 -2 187 331 55 88 chrX 149734126 149734398 -27239742 - L2 LINE L2 -3 3269 3007 4037 175 35 59 chrX 149734476 149735455 -27238685 + LTR5 LTR ERVK 1 955 -14 185 274 60 24 chrX 149735473 149735557 -27238583 - L2 LINE L2 -356 2957 2871 339 335 139 9 chrX 149735774 149735989 -27238151 - MIR SINE MIR 0 262 20 1811 246 60 14 chrX 149736120 149736604 -27237536 + MARNA DNA Mariner 65 570 -16 257 330 75 0 chrX 149737080 149737186 -27236954 - MIR SINE MIR -72 136 23 270 290 0 0 chrX 149737399 149737468 -27236672 + (TG)n Simple_repeat Simple_repeat 1 69 0 186 189 0 0 chrX 149737603 149737640 -27236500 + CT-rich Low_complexity Low_complexity 4 40 0 1464 181 34 0 chrX 149738809 149739101 -27235039 + L1MA4 LINE L1 5999 6300 0 2021 152 58 80 chrX 149739956 149740470 -27233670 + MLT1D LTR MaLR 1 503 -2 2376 187 76 31 chrX 149741244 149741784 -27232356 + Charlie1a DNA MER1_type 5 568 -887 2314 12 0 0 chrX 149741784 149742037 -27232103 - L1PA3 LINE L1 -448 5707 5455 3859 38 0 0 chrX 149742037 149742485 -27231655 + L1PA3 LINE L1 5706 6155 0 3767 191 51 11 chrX 149742544 149743385 -27230755 + Charlie1a DNA MER1_type 555 1429 -26 210 282 30 84 chrX 149743430 149743561 -27230579 - MIR SINE MIR -38 224 101 272 274 212 0 chrX 149743868 149743981 -27230159 + MIR SINE MIR 2 138 -124 2224 189 20 7 chrX 149743984 149744069 -27230071 - L1ME1 LINE L1 -196 5970 5886 2708 251 102 16 chrX 149744069 149745279 -27228861 - L1MA5A LINE L1 -408 5889 4565 1529 179 96 40 chrX 149745292 149745723 -27228417 + MLT1D LTR MaLR 1 505 0 331 145 116 0 chrX 149745735 149745804 -27228336 - L1MEc LINE L1 -1593 4622 4546 1447 184 39 36 chrX 149745809 149746146 -27227994 + MLT1A1 LTR MaLR 2 339 -26 3077 205 62 75 chrX 149746146 149747144 -27226996 - L1MEc LINE L1 -1684 4531 3547 2970 235 62 36 chrX 149747161 149748172 -27225968 - L1MEc LINE L1 -2768 3447 2410 513 121 0 121 chrX 149748172 149748288 -27225852 + MLT1E2 LTR MaLR 1 102 -524 2129 193 32 67 chrX 149748319 149748897 -27225243 - MLT1E2 LTR MaLR -67 558 3 2438 199 21 29 chrX 149748903 149749425 -27224715 + MLT1E2 LTR MaLR 105 622 -4 905 193 56 17 chrX 149749428 149749661 -27224479 - L1MEc LINE L1 -3942 2454 2213 592 268 71 27 chrX 149749638 149749862 -27224278 - L1MEc LINE L1 -6129 267 34 * 269 334 75 44 chrX 149750058 149750420 -27223720 + L2 LINE L2 2898 3270 -2 2420 90 13 3 chrX 149751527 149751837 -27222303 - AluSq SINE Alu 0 313 1 2070 105 0 0 chrX 149753389 149753655 -27220485 + AluSx SINE Alu 35 300 -12 1831 151 128 28 chrX 149753854 149754212 -27219928 - MLT2C1 LTR ERVL 0 397 4 292 258 11 45 chrX 149754287 149754376 -27219764 - L2 LINE L2 -1 3312 3227 433 247 274 16 chrX 149754415 149754605 -27219535 - MIR SINE MIR -10 252 14 732 89 0 0 chrX 149755018 149755108 -27219032 - MER2 DNA MER2_type -254 91 2 1944 222 57 53 chrX 149755528 149756092 -27218048 + MER119 DNA MER1_type 18 583 0 821 270 119 71 chrX 149758007 149758537 -27215603 - L1ME4a LINE L1 -2 6119 5559 862 165 0 0 chrX 149758537 149758670 -27215470 + FLAM_C SINE Alu 1 133 0 821 270 119 71 chrX 149758670 149758702 -27215438 - L1ME4a LINE L1 -562 5559 5530 1793 257 92 28 chrX 149759561 149760629 -27213511 + L1MD2 LINE L1 4987 6115 -244 181 214 0 0 chrX 149762668 149762710 -27211430 + MIR SINE MIR 106 147 -115 439 235 60 38 chrX 149763341 149763524 -27210616 - MER5A DNA MER1_type 0 189 3 405 254 124 24 chrX 149766075 149766244 -27207896 - MIR SINE MIR -70 192 7 2434 53 3 0 chrX 149769642 149769945 -27204195 + AluY SINE Alu 1 304 -7 626 182 14 0 chrX 149770306 149770454 -27203686 + CT-rich Low_complexity Low_complexity 1 150 0 180 111 0 0 chrX 149770457 149770484 -27203656 + (TC)n Simple_repeat Simple_repeat 2 28 0 2214 105 0 0 chrX 149771099 149771404 -27202736 + AluSg SINE Alu 1 305 -5 1396 230 64 44 chrX 149771405 149772015 -27202125 + L1MC/D LINE L1 5182 5808 -745 1131 343 94 35 chrX 149772079 149773050 -27201090 + L1M4 LINE L1 3562 4589 -1557 304 244 0 78 chrX 149773613 149773703 -27200437 + L1MC4 LINE L1 6618 6700 -1342 338 21 0 42 chrX 149774935 149774983 -27199157 + (CACCC)n Simple_repeat Simple_repeat 1 46 0 192 91 68 0 chrX 149775383 149775427 -27198713 + C-rich Low_complexity Low_complexity 1 47 0 339 267 37 87 chrX 149876296 149876457 -27097683 + L1MC/D LINE L1 3068 3220 -2926 917 288 37 6 chrX 149877233 149877559 -27096581 + L1MC/D LINE L1 4015 4350 -1796 2870 258 70 41 chrX 149877563 149878822 -27095318 - L1MCb LINE L1 -4851 1194 6 2407 252 38 27 chrX 149878873 149879763 -27094377 + L1MC/D LINE L1 4377 5276 -870 838 189 12 6 chrX 149879791 149879960 -27094180 - LTR54 LTR ERV1 0 510 341 2568 141 140 45 chrX 149879960 149880631 -27093509 + MER4-int LTR ERV1 381 1162 -5436 294 29 0 0 chrX 149880743 149880778 -27093362 + (TG)n Simple_repeat Simple_repeat 2 36 0 514 142 33 126 chrX 149880778 149880956 -27093184 + MER4-int LTR ERV1 2109 2269 -3994 6159 149 76 51 chrX 149881008 149882750 -27091390 + MER4-int LTR ERV1 1145 3998 -2600 2336 79 7 10 chrX 149882750 149883053 -27091087 - AluSc SINE Alu -7 302 1 6159 149 76 51 chrX 149883053 149883141 -27090999 + MER4-int LTR ERV1 3998 4082 -2516 502 225 33 0 chrX 149883195 149883315 -27090825 - LTR54B LTR ERV1 -374 124 1 964 214 41 58 chrX 149883315 149883479 -27090661 + L1MC/D LINE L1 5303 5461 -781 2214 95 13 28 chrX 149883479 149883796 -27090344 - AluSq SINE Alu -1 312 1 964 214 41 58 chrX 149883796 149883926 -27090214 + L1MC/D LINE L1 5461 5592 -650 5683 182 19 41 chrX 149883982 149884121 -27090019 - L1PA15 LINE L1 0 6165 6024 2030 135 24 0 chrX 149884121 149884410 -27089730 - AluSx SINE Alu -16 296 1 5683 182 19 41 chrX 149884410 149885846 -27088294 - L1PA15 LINE L1 -141 6024 4661 3190 51 3 0 chrX 149885846 149886216 -27087924 + L1PA5 LINE L1 5778 6148 -6 5683 182 19 41 chrX 149886216 149886912 -27087228 - L1PA15 LINE L1 -1504 4661 3951 558 239 25 110 chrX 149886909 149887042 -27087098 + L1P5 LINE L1 5344 5443 -708 * 2092 115 0 30 chrX 149887042 149887346 -27086794 + AluSx SINE Alu 1 295 -17 558 239 25 110 chrX 149887346 149887488 -27086652 + L1P5 LINE L1 5443 5595 -556 23 33 0 0 chrX 149887543 149887573 -27086567 + AT_rich Low_complexity Low_complexity 1 30 0 1932 283 42 26 chrX 149887573 149888457 -27085683 + L1M4 LINE L1 2315 3212 -2934 184 282 169 0 chrX 149888654 149888725 -27085415 - MIR SINE MIR -19 243 161 305 330 115 25 chrX 149889864 149890069 -27084071 + MIR SINE MIR 1 226 -36 253 330 61 0 chrX 149890954 149891069 -27083071 + L2 LINE L2 3149 3270 -2 299 237 9 0 chrX 149896433 149896547 -27077593 + (TA)n Simple_repeat Simple_repeat 1 115 0 393 286 44 40 chrX 149897105 149897332 -27076808 - L1M4 LINE L1 -1573 4573 4346 1149 265 72 11 chrX 149898049 149898640 -27075500 - L1MC/D LINE L1 -745 5401 5175 712 209 33 0 chrX 149898639 149898792 -27075348 - L1MC3 LINE L1 0 7785 7628 * 3733 215 58 28 chrX 149898803 149900839 -27073301 - L1MC3 LINE L1 -219 7566 5258 2010 235 18 18 chrX 149900840 149901393 -27072747 - L1MC3 LINE L1 -846 5300 4748 358 250 17 42 chrX 149901409 149901529 -27072611 + L1MC3 LINE L1 7253 7369 -416 9837 158 9 15 chrX 149901529 149902742 -27071398 - L1PA13 LINE L1 0 6814 5595 2584 71 0 0 chrX 149902742 149903053 -27071087 - AluY SINE Alu 0 311 1 9837 158 9 15 chrX 149903053 149904304 -27069836 - L1PA13 LINE L1 -1219 5595 4359 1015 203 43 116 chrX 149904304 149904450 -27069690 - L1PA13 LINE L1 -5093 1694 1539 347 103 22 7 chrX 149904450 149904507 -27069633 + Alu SINE Alu 246 290 -10 1015 203 43 116 chrX 149904507 149904889 -27069251 - L1PA13 LINE L1 -5248 1539 1019 754 219 0 0 chrX 149904889 149905049 -27069091 + L1MC3 LINE L1 7357 7516 -269 1263 270 95 6 chrX 149905656 149906152 -27067988 + L1ME3A LINE L1 5593 6132 -38 5258 175 43 29 chrX 149906210 149907366 -27066774 + Ricksha_a DNA DNA 1 1173 -8 311 247 59 0 chrX 149907878 149907963 -27066177 + MIR SINE MIR 92 181 -81 764 204 29 4 chrX 149909050 149909229 -27064911 - LTR54 LTR ERV1 -85 425 212 22 0 0 0 chrX 149909236 149909258 -27064882 + AT_rich Low_complexity Low_complexity 1 22 0 1416 43 0 0 chrX 149909258 149909419 -27064721 - L1PA5 LINE L1 -7 6147 5987 1958 18 0 0 chrX 149909419 149909641 -27064499 + L1PA5 LINE L1 5762 5983 -172 645 197 53 0 chrX 149909665 149909797 -27064343 - LTR54B LTR ERV1 -359 139 1 1377 222 38 7 chrX 149909797 149910090 -27064050 - LTR49-int LTR ERV1 -393 7144 6843 3024 193 26 86 chrX 149910139 149910864 -27063276 - MER54B LTR ERVL -111 682 1 545 222 0 32 chrX 149910867 149910993 -27063147 - LTR49-int LTR ERV1 -789 7027 6906 508 229 18 130 chrX 149911150 149911285 -27062855 - LTR49-int LTR ERV1 -697 4174 4072 1578 155 33 188 chrX 149911285 149911795 -27062345 + Tigger2a DNA MER2_type 4 434 0 508 229 18 130 chrX 149911795 149911882 -27062258 - LTR49-int LTR ERV1 -799 4072 3977 15527 210 27 23 chrX 149911945 149912788 -27061352 - L1PA15 LINE L1 -8 6808 5970 2116 111 0 11 chrX 149912788 149913068 -27061072 - AluSg SINE Alu -33 277 1 15527 210 27 23 chrX 149913068 149918971 -27055169 - L1PA15 LINE L1 -846 5970 1 3313 204 71 70 chrX 149918981 149920237 -27053903 - LTR49-int LTR ERV1 -530 6002 4749 2407 99 0 0 chrX 149920237 149920549 -27053591 + AluSx SINE Alu 1 312 0 3313 204 71 70 chrX 149920549 149920638 -27053502 - LTR49-int LTR ERV1 -1783 4749 4662 2385 73 0 0 chrX 149920638 149920926 -27053214 + L1PA6 LINE L1 5867 6154 0 3313 204 71 70 chrX 149920926 149921342 -27052798 - LTR49-int LTR ERV1 -1870 4662 2879 361 276 46 38 chrX 149921510 149921827 -27052313 - LTR49-int LTR ERV1 -2435 3896 2266 558 192 57 69 chrX 149922014 149922248 -27051892 - LTR49-int LTR ERV1 -2983 1953 1843 1668 70 5 5 chrX 149922248 149922463 -27051677 - L1PA13 LINE L1 -1 6162 5948 558 192 57 69 chrX 149922463 149922571 -27051569 - LTR49-int LTR ERV1 -3093 1843 1735 424 275 115 12 chrX 149922575 149922826 -27051314 + MER34 LTR ERV1 1 327 -317 274 203 51 25 chrX 149923188 149923267 -27050873 - LTR49-int LTR ERV1 -4683 1915 1835 315 253 0 0 chrX 149923407 149923482 -27050658 - LTR49-int LTR ERV1 -4149 974 900 545 278 0 42 chrX 149923640 149923831 -27050309 - LTR49-int LTR ERV1 -6696 841 659 2195 95 13 12 chrX 149924059 149924462 -27049678 - L1P LINE L1 -740 5423 5017 2925 104 31 0 chrX 149924463 149924877 -27049263 + L1PA13 LINE L1 5437 5863 -300 354 94 32 0 chrX 149925074 149925096 -27049044 + L1P LINE L1 5299 5319 -832 5112 97 5 50 chrX 149925096 149925453 -27048687 - L1PB1 LINE L1 -2 6149 5843 380 37 19 0 chrX 149925453 149925507 -27048633 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 5112 97 5 50 chrX 149925507 149925914 -27048226 - L1PB1 LINE L1 -308 5843 5419 354 94 32 0 chrX 149925914 149925961 -27048179 + L1P LINE L1 5319 5375 -776 313 267 82 7 chrX 149926204 149926339 -27047801 - LTR49-int LTR ERV1 -7047 490 346 335 316 53 18 chrX 149926354 149926643 -27047497 - LTR49-int LTR ERV1 -4121 2210 1901 1102 215 79 12 chrX 149926644 149927058 -27047082 - LTR54 LTR ERV1 0 510 20 189 0 0 0 chrX 149927294 149927315 -27046825 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 195 42 0 0 chrX 149927314 149927338 -27046802 + (TG)n Simple_repeat Simple_repeat 1 24 0 671 230 13 13 chrX 149927339 149927491 -27046649 + HERVL68 LTR ERVL 898 1049 -1988 240 191 64 0 chrX 149927491 149927538 -27046602 + LTR55 LTR ERV 1 50 -498 1483 243 56 5 chrX 149927638 149928086 -27046054 + LTR55 LTR ERV 55 525 -23 5769 245 87 23 chrX 149928105 149929960 -27044180 + HERVL68 LTR ERVL 1052 3025 -12 2015 221 56 24 chrX 149929960 149930499 -27043641 + MER68 LTR ERV1 1 556 -6 2335 227 54 9 chrX 149931192 149931806 -27042334 + L1MCa LINE L1 568 1194 -4851 3859 225 27 22 chrX 149931821 149932883 -27041257 + L1MB3 LINE L1 5117 6183 0 1963 182 45 0 chrX 149932896 149933319 -27040821 + L1MCa LINE L1 1197 1638 -4926 2253 129 156 8 chrX 149933499 149933872 -27040268 + MSTA LTR MaLR 1 428 0 8857 163 62 15 chrX 149933874 149934122 -27040018 + MSTA-int LTR MaLR 3 238 -1342 2287 97 7 0 chrX 149934122 149934421 -27039719 + AluSp SINE Alu 1 301 -12 8857 163 62 15 chrX 149934421 149935680 -27038460 + MSTA-int LTR MaLR 238 1580 0 2232 109 157 21 chrX 149935680 149936055 -27038085 + MSTA LTR MaLR 1 426 -2 3340 271 63 32 chrX 149936239 149936334 -27037806 + L1M4 LINE L1 2666 2757 -3389 2066 42 13 0 chrX 149936334 149936572 -27037568 + AluY SINE Alu 59 299 -12 3340 271 63 32 chrX 149936572 149938121 -27036019 + L1M4 LINE L1 2757 4362 -1784 2424 222 81 53 chrX 149938139 149938359 -27035781 - L1MCb LINE L1 -4851 1194 982 2386 77 0 39 chrX 149938359 149938669 -27035471 + AluY SINE Alu 1 298 -13 2424 222 81 53 chrX 149938669 149939323 -27034817 - L1MCb LINE L1 -5063 982 368 1485 134 95 143 chrX 149939344 149939777 -27034363 + MER4-int LTR ERV1 749 1160 -5438 1444 175 250 38 chrX 149939805 149940257 -27033883 - LTR10A LTR ERV1 -61 548 1 15266 103 8 5 chrX 149940262 149942680 -27031460 - Harlequin LTR ERV1 -1 7784 2280 3495 47 15 1 chrX 149942680 149943197 -27030943 - LTR10C LTR ERV1 0 591 1 321 313 56 42 chrX 149943200 149943414 -27030726 - Harlequin LTR ERV1 -2 6647 6431 4379 285 56 35 chrX 149943449 149945117 -27029023 - Harlequin LTR ERV1 -585 6064 4363 3221 124 34 8 chrX 149945300 149946023 -27028117 - Harlequin LTR ERV1 -2315 3271 1897 306 156 0 0 chrX 149946085 149946149 -27027991 + CT-rich Low_complexity Low_complexity 1 64 0 642 284 18 6 chrX 149947097 149947266 -27026874 - LTR10C-int LTR ERV1 -6474 175 5 3277 58 29 1 chrX 149947266 149947774 -27026366 - LTR10C LTR ERV1 0 591 3 3242 87 15 2 chrX 149947774 149948248 -27025892 - BaEV-int LTR ERV1 -4604 2292 1813 370 193 169 0 chrX 149948251 149948334 -27025806 + LTR8 LTR ERV1 157 253 -438 5584 94 20 47 chrX 149948336 149949429 -27024711 - Harlequin LTR ERV1 -5176 1720 709 492 172 11 69 chrX 149949428 149949690 -27024450 - Harlequin LTR ERV1 -5810 1086 840 * 4786 214 63 78 chrX 149949738 149951321 -27022819 - Harlequin LTR ERV1 -6202 1583 25 1774 212 95 31 chrX 149951355 149951869 -27022271 - LTR10A LTR ERV1 -61 548 2 28208 81 9 6 chrX 149951920 149955691 -27018449 + L1P LINE L1 12 3793 -2353 4304 45 0 22 chrX 149955691 149956181 -27017959 + L1PA5 LINE L1 5651 6148 -6 442 159 18 118 chrX 149956216 149956414 -27017726 + MER4C-int LTR ERV1 565 2781 -4317 31 58 0 0 chrX 149956473 149956525 -27017615 + AT_rich Low_complexity Low_complexity 1 52 0 274 154 99 55 chrX 149956525 149956594 -27017546 + MER4C-int LTR ERV1 2090 2165 -4433 2388 77 3 3 chrX 149956594 149956892 -27017248 - AluSp SINE Alu -15 298 1 274 154 99 55 chrX 149956892 149956913 -27017227 + MER4C-int LTR ERV1 2165 2184 -4414 2690 230 62 11 chrX 149956915 149957646 -27016494 + L1MC3 LINE L1 5325 6092 -1693 550 164 0 64 chrX 149957646 149957720 -27016420 + MER4C-int LTR ERV1 6494 6560 -38 1895 135 71 41 chrX 149957720 149958084 -27016056 + THE1C LTR MaLR 1 375 0 550 164 0 64 chrX 149958084 149958119 -27016021 + MER4C-int LTR ERV1 6560 6596 -2 3085 107 64 5 chrX 149958126 149958565 -27015575 + MER4C LTR ERV1 1 465 0 403 272 18 0 chrX 149959767 149959881 -27014259 - LTR54B LTR ERV1 -372 126 11 847 256 24 31 chrX 149959889 149960182 -27013958 + L1MD2 LINE L1 5299 5589 -577 25 0 0 0 chrX 149960207 149960232 -27013908 + AT_rich Low_complexity Low_complexity 1 25 0 5656 191 26 15 chrX 149960247 149962429 -27011711 - L1PA15 LINE L1 -5 6160 3956 310 250 33 15 chrX 149962431 149962560 -27011580 + L1P4 LINE L1 5347 5445 -720 1024 265 57 43 chrX 149962576 149962995 -27011145 + L1MD2 LINE L1 5688 6112 -247 1198 241 80 27 chrX 149963069 149963517 -27010623 + L1M4 LINE L1 2315 2786 -3360 519 279 47 51 chrX 149963551 149964021 -27010119 + L1M4 LINE L1 2753 3220 -2926 459 284 90 24 chrX 149965416 149965627 -27008513 + MIR SINE MIR 13 237 -25 258 310 67 0 chrX 149966529 149966632 -27007508 + L2 LINE L2 3164 3272 0 1053 134 38 0 chrX 149966777 149966934 -27007206 - AluY SINE Alu -16 295 133 2383 67 3 13 chrX 149966934 149967234 -27006906 - AluY SINE Alu -14 297 1 460 232 0 0 chrX 149971737 149971836 -27002304 - LTR54B LTR ERV1 -399 99 1 632 264 0 13 chrX 149972098 149972253 -27001887 + HERVL68 LTR ERVL 897 1049 -1988 295 143 20 0 chrX 149972253 149972302 -27001838 + LTR55 LTR ERV 1 50 -498 1373 219 121 32 chrX 149972401 149972840 -27001300 + LTR55 LTR ERV 49 526 -22 5398 252 65 41 chrX 149972856 149974795 -26999345 + HERVL68 LTR ERVL 1052 3037 0 2571 208 18 42 chrX 149975180 149975381 -26998759 + L1MD2 LINE L1 554 758 -5287 605 219 0 0 chrX 149975381 149975509 -26998631 + FLAM_C SINE Alu 2 129 -4 2571 208 18 42 chrX 149975509 149975966 -26998174 + L1MD2 LINE L1 758 1196 -4849 * 3623 224 24 23 chrX 149975960 149977036 -26997104 + L1MB3 LINE L1 5107 6183 0 1433 219 68 7 chrX 149977062 149977477 -26996663 + L1MD2 LINE L1 1196 1635 -4929 3255 275 49 42 chrX 149977833 149977919 -26996221 + L1MD2 LINE L1 3083 3167 -3397 1937 152 0 24 chrX 149977919 149978080 -26996060 - AluSx SINE Alu -18 294 142 2397 73 0 33 chrX 149978080 149978381 -26995759 - AluSc SINE Alu -18 291 1 1937 152 0 24 chrX 149978381 149978515 -26995625 - AluSx SINE Alu -170 142 6 249 33 0 0 chrX 149978517 149978547 -26995593 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 3255 275 49 42 chrX 149978547 149980141 -26993999 + L1MD2 LINE L1 3167 4777 -1787 382 250 7 56 chrX 149980137 149980281 -26993859 - L1MCa LINE L1 -5266 1298 1162 * 2829 232 85 72 chrX 149980292 149980326 -26993814 - L1MCa LINE L1 -4851 1194 1162 1946 101 0 77 chrX 149980326 149980624 -26993516 - AluSx SINE Alu -17 295 21 2829 232 85 72 chrX 149980624 149981763 -26992377 - L1MCa LINE L1 -4883 1162 5 3138 60 0 2 chrX 149981820 149982234 -26991906 - L1PA7 LINE L1 -59 6095 5688 419 122 73 12 chrX 149982230 149982312 -26991828 + L1PA7 LINE L1 6059 6145 -9 * 2082 286 35 8 chrX 149982529 149983198 -26990942 + L1MD2 LINE L1 4776 5478 -1086 2466 77 0 16 chrX 149983198 149983538 -26990602 + AluSg SINE Alu 1 310 0 2082 286 35 8 chrX 149983538 149983790 -26990350 + L1MD2 LINE L1 5478 5722 -842 1323 248 120 0 chrX 149983790 149984233 -26989907 - LTR54B LTR ERV1 -2 496 1 2107 255 71 18 chrX 149984233 149984984 -26989156 + L1MD2 LINE L1 5721 6507 -153 1485 300 37 22 chrX 149984958 149985738 -26988402 + L1M4 LINE L1 2847 3638 -2926 * 1865 168 3 0 chrX 149985791 149986082 -26988058 + AluSx SINE Alu 1 292 -20 2300 122 86 11 chrX 149986275 149986716 -26987424 + MER1A DNA MER1_type 1 529 0 441 304 75 26 chrX 149987908 149988135 -26986005 + MIR SINE MIR 13 250 -12 192 91 68 0 chrX 149994020 149994064 -26980076 + G-rich Low_complexity Low_complexity 1 47 0 383 19 0 38 chrX 149994464 149994517 -26979623 + (GGGTG)n Simple_repeat Simple_repeat 1 51 0 321 273 33 13 chrX 149995675 149995825 -26978315 + (TATATG)n Simple_repeat Simple_repeat 6 158 0 * 371 282 18 12 chrX 149995713 149995883 -26978257 + (TA)n Simple_repeat Simple_repeat 1 171 0 994 338 95 37 chrX 149996416 149997372 -26976768 - L1M4 LINE L1 -1573 4573 3562 1388 230 64 44 chrX 149997436 149998046 -26976094 - L1MC/D LINE L1 -745 5401 5182 2332 106 0 0 chrX 149998047 149998350 -26975790 - AluSg SINE Alu -7 303 1 180 111 0 0 chrX 149998965 149998992 -26975148 + (GA)n Simple_repeat Simple_repeat 2 28 0 665 179 13 0 chrX 149998995 149999151 -26974989 + GA-rich Low_complexity Low_complexity 1 158 0 2569 60 0 0 chrX 149999512 149999814 -26974326 - AluY SINE Alu -9 302 1 380 254 124 24 chrX 150003212 150003381 -26970759 + MIR SINE MIR 7 192 -70 453 251 38 16 chrX 150005930 150006113 -26968027 + MER5A DNA MER1_type 3 189 0 194 214 0 0 chrX 150006744 150006786 -26967354 - MIR SINE MIR -115 147 106 1921 263 65 28 chrX 150008826 150009728 -26964412 - L1MD2 LINE L1 -244 6115 5188 761 211 49 25 chrX 150009758 150009962 -26964178 + L1MC4a LINE L1 6752 6960 -848 * 1469 264 47 17 chrX 150009960 150010618 -26963522 - L1MD2 LINE L1 -1598 4548 3871 855 234 208 12 chrX 150010649 150011310 -26962830 + L1MC3 LINE L1 1844 2666 -3941 3784 194 21 15 chrX 150011313 150011686 -26962454 + L1MC3 LINE L1 5739 6108 -1957 2603 89 0 11 chrX 150011686 150012045 -26962095 - THE1A LTR MaLR 0 355 1 3784 194 21 15 chrX 150012045 150012534 -26961606 + L1MC3 LINE L1 6108 6606 -1459 200 313 0 0 chrX 150013034 150013082 -26961058 - L2 LINE L2 -12 3260 3213 5493 127 154 108 chrX 150016924 150018471 -26955669 - pTR5 LTR ERV1 0 2438 743 5505 207 36 29 chrX 150019877 150021198 -26952942 - L1MC3 LINE L1 0 7785 6456 267 229 33 57 chrX 150021545 150021667 -26952473 + MIR SINE MIR 19 137 -125 803 220 16 65 chrX 150022123 150022368 -26951772 + L1M4 LINE L1 771 1003 -5539 271 118 59 0 chrX 150022368 150022453 -26951687 + (TA)n Simple_repeat Simple_repeat 1 90 0 29 28 0 0 chrX 150022878 150022914 -26951226 + AT_rich Low_complexity Low_complexity 1 36 0 343 53 0 53 chrX 150022914 150022971 -26951169 + MLT2A2 LTR ERVL 400 453 0 22903 73 7 9 chrX 150022974 150025825 -26948315 + HERVL-A2 LTR ERVL 3 2848 -2806 2589 62 0 3 chrX 150025825 150026132 -26948008 - AluY SINE Alu -5 306 1 22903 73 7 9 chrX 150026132 150026205 -26947935 + HERVL-A2 LTR ERVL 2848 2920 -2734 230 254 22 60 chrX 150026274 150026408 -26947732 + G-rich Low_complexity Low_complexity 4 132 0 903 287 32 36 chrX 150028632 150029162 -26944978 - L1MC5 LINE L1 -34 7927 7400 1220 251 25 11 chrX 150029167 150029529 -26944611 - L1MCb LINE L1 -4899 1146 780 786 168 0 0 chrX 150029532 150029669 -26944471 + L1MC3 LINE L1 7636 7772 -13 451 270 11 48 chrX 150029672 150029861 -26944279 + L1MC5 LINE L1 6956 7137 -824 540 264 43 97 chrX 150030717 150031016 -26943124 + L2 LINE L2 3030 3312 -1 294 239 0 0 chrX 150031686 150031757 -26942383 - L2 LINE L2 0 3313 3243 518 229 8 53 chrX 150031767 150031898 -26942242 + L1MD3 LINE L1 7526 7650 -345 797 284 9 0 chrX 150033924 150034139 -26940001 + MIR SINE MIR 23 239 -23 188 241 37 19 chrX 150034106 150034160 -26939980 + L2 LINE L2 3210 3264 -8 * 4384 101 21 8 chrX 150035204 150035869 -26938271 - L1MA3 LINE L1 0 6305 5632 753 158 41 64 chrX 150036474 150036645 -26937495 + MER3 DNA MER1_type 43 209 0 2050 341 59 29 chrX 150036646 150038081 -26936059 - ERVL LTR ERVL -870 4894 3417 * 2169 296 81 23 chrX 150038076 150039064 -26935076 - ERVL LTR ERVL -2464 2532 1494 284 0 28 0 chrX 150039294 150039330 -26934810 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2872 224 54 22 chrX 150039419 150040346 -26933794 + L1MB8 LINE L1 4178 5196 -950 1751 167 23 20 chrX 150040346 150040652 -26933488 + AluJb SINE Alu 1 307 -5 1599 223 111 19 chrX 150040652 150041122 -26933018 + L1MB8 LINE L1 5666 6178 0 1811 198 8 23 chrX 150041130 150041484 -26932656 - L1MCa LINE L1 -6074 352 4 2313 196 83 20 chrX 150041921 150042034 -26932106 + L1MC2 LINE L1 5708 5812 -532 1675 176 0 28 chrX 150042034 150042323 -26931817 + AluJo SINE Alu 1 281 -31 2313 196 83 20 chrX 150042323 150042340 -26931800 + L1MC2 LINE L1 5812 5826 -518 222 37 0 0 chrX 150042340 150042367 -26931773 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2313 196 83 20 chrX 150042367 150042826 -26931314 + L1MC2 LINE L1 5826 6335 -9 3277 164 20 31 chrX 150042837 150043023 -26931117 + L1MD1 LINE L1 5595 5781 -461 2057 128 7 10 chrX 150043023 150043327 -26930813 + AluSq SINE Alu 1 303 -10 3277 164 20 31 chrX 150043327 150043793 -26930347 + L1MD1 LINE L1 5781 6240 -2 332 119 45 15 chrX 150043804 150043871 -26930269 - MER97c DNA MER1_type? -1018 72 4 22 35 0 0 chrX 150044403 150044432 -26929708 + AT_rich Low_complexity Low_complexity 1 29 0 1923 216 51 85 chrX 150046096 150046354 -26927786 + L1M4 LINE L1 4109 4374 -1772 2201 118 0 0 chrX 150046354 150046659 -26927481 + AluSq SINE Alu 1 305 -8 1923 216 51 85 chrX 150046659 150047016 -26927124 + L1M4 LINE L1 4374 4696 -1450 608 38 0 25 chrX 150047016 150047096 -26927044 + L1PA7 LINE L1 6077 6154 0 1923 216 51 85 chrX 150047096 150047242 -26926898 + L1M4 LINE L1 4696 4845 -1301 3845 107 11 3 chrX 150047263 150048016 -26926124 + L1MA1 LINE L1 5332 6304 0 2294 207 29 4 chrX 150048100 150048621 -26925519 + L1M4 LINE L1 4676 5209 -937 2702 140 93 15 chrX 150049186 150049658 -26924482 - LTR22 LTR ERVK 0 509 1 41372 65 1 3 chrX 150049658 150054728 -26919412 - HERVK22 LTR ERVK 0 6837 1776 1236 269 15 12 chrX 150054772 150055106 -26919034 - LTR43 LTR ERV1 -137 465 131 261 0 0 0 chrX 150055196 150055225 -26918915 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 371 147 15 0 chrX 150055247 150055315 -26918825 - LTR60 LTR ERV1 -517 69 1 1422 279 42 24 chrX 150055374 150055919 -26918221 + L1MCb LINE L1 1 555 -5490 1695 236 6 3 chrX 150055920 150056276 -26917864 + MER57A LTR ERV1 1 357 -46 3866 126 24 12 chrX 150056416 150056584 -26917556 - LTR26 LTR ERV1 0 603 438 2279 114 109 15 chrX 150056584 150056995 -26917145 + LTR7 LTR ERV1 1 450 0 3866 126 24 12 chrX 150056995 150057422 -26916718 - LTR26 LTR ERV1 -165 438 1 1385 275 24 36 chrX 150057423 150058018 -26916122 + L1MCb LINE L1 650 1235 -4852 2480 98 21 32 chrX 150058179 150058518 -26915622 + THE1C LTR MaLR 1 337 -38 2840 7 0 7 chrX 150058518 150058826 -26915314 - AluYa5 SINE Alu -5 306 1 2480 98 21 32 chrX 150058826 150058865 -26915275 + THE1C LTR MaLR 337 375 0 9044 117 81 37 chrX 150058865 150060378 -26913762 + THE1C-int LTR MaLR 1 1580 0 2395 121 30 3 chrX 150060378 150060743 -26913397 + THE1C LTR MaLR 1 375 0 3280 166 25 110 chrX 150061100 150062079 -26912061 - MER21A LTR ERV1 -29 902 70 801 58 0 0 chrX 150062227 150062330 -26911810 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 1036 273 49 84 chrX 150064113 150064867 -26909273 - L1MEc LINE L1 -4408 1988 1261 1338 249 134 10 chrX 150064886 150065476 -26908664 - L1MEc LINE L1 -5458 938 164 966 73 58 0 chrX 150265480 150265617 -26708523 + L1PA13 LINE L1 6019 6163 0 539 185 53 113 chrX 150265611 150265762 -26708378 + L1M4 LINE L1 5413 5554 -624 * 743 194 55 32 chrX 150266024 150266241 -26707899 + L1M4 LINE L1 3849 4070 -2076 481 293 12 42 chrX 150266770 150266937 -26707203 + L2 LINE L2 2586 2747 -567 505 272 152 0 chrX 150267109 150267300 -26706840 - MIR SINE MIR -33 229 10 190 341 159 0 chrX 150267305 150267531 -26706609 - L3 LINE CR1 -85 1492 1231 691 298 37 9 chrX 150267659 150267877 -26706263 + MIR SINE MIR 15 238 -24 2191 221 115 24 chrX 150267948 150268609 -26705531 - L1ME2 LINE L1 0 6233 5513 246 129 0 157 chrX 150268749 150268819 -26705321 - MIR SINE MIR -83 179 121 280 349 54 8 chrX 150268821 150268950 -26705190 - L2 LINE L2 0 3272 3138 7380 94 16 8 chrX 150270092 150271157 -26702983 - L1MA1 LINE L1 0 6302 5232 3177 248 53 16 chrX 150271159 150271561 -26702579 - L1ME2 LINE L1 -1441 4774 4388 2466 207 70 0 chrX 150271561 150272029 -26702111 - MLT1D LTR MaLR 0 505 5 3177 248 53 16 chrX 150272029 150272151 -26701989 - L1ME2 LINE L1 -1827 4388 4272 686 81 9 0 chrX 150272151 150272262 -26701878 + (TTCC)n Simple_repeat Simple_repeat 3 114 0 3177 248 53 16 chrX 150272262 150272796 -26701344 - L1ME2 LINE L1 -1943 4272 3676 989 209 92 8 chrX 150272798 150273047 -26701093 + L1M4 LINE L1 3713 3982 -2164 4157 256 75 40 chrX 150273048 150273104 -26701036 - L1ME2 LINE L1 -4702 1694 1641 195 42 0 0 chrX 150273104 150273128 -26701012 + (CATAT)n Simple_repeat Simple_repeat 5 28 0 4157 256 75 40 chrX 150273128 150273420 -26700720 - L1ME2 LINE L1 -4755 1641 1360 2383 188 24 12 chrX 150273420 150273841 -26700299 + MSTB LTR MaLR 1 426 0 4157 256 75 40 chrX 150273841 150275095 -26699045 - L1ME2 LINE L1 -5036 1360 36 228 139 0 0 chrX 150275097 150275140 -26699000 + MER3 DNA MER1_type 135 130 -79 838 276 65 30 chrX 150275994 150276363 -26697777 - L2 LINE L2 -621 2693 2312 206 380 60 15 chrX 150277574 150277774 -26696366 - L2 LINE L2 -225 3047 2839 2193 204 55 20 chrX 150279008 150279482 -26694658 + MLT2B1 LTR ERVL 1 533 -21 214 73 49 0 chrX 150279482 150279523 -26694617 + CT-rich Low_complexity Low_complexity 1 43 0 264 59 0 0 chrX 150279531 150279565 -26694575 + (TG)n Simple_repeat Simple_repeat 1 34 0 234 238 29 57 chrX 150281181 150281286 -26692854 - MIR3 SINE MIR -95 113 12 961 315 45 9 chrX 150281535 150281974 -26692166 + L2 LINE L2 2623 3073 -240 906 146 7 0 chrX 150281981 150282125 -26692015 + L1M2 LINE L1 5506 5650 -650 645 103 21 10 chrX 150282125 150282222 -26691918 + MER4A LTR ERV1 1 98 -566 341 163 10 6 chrX 150282222 150282326 -26691814 + MER4A LTR ERV1 261 423 -241 2385 109 30 43 chrX 150282326 150282694 -26691446 - THE1B LTR MaLR 0 364 2 12411 98 2 1 chrX 150282695 150284273 -26689867 - THE1A-int LTR MaLR 0 1580 1 2503 101 9 0 chrX 150284278 150284625 -26689515 - THE1A LTR MaLR -5 350 1 1913 98 93 35 chrX 150284628 150285026 -26689114 + MER4-int LTR ERV1 159 713 -5885 248 89 0 22 chrX 150285026 150285071 -26689069 + (TTG)n Simple_repeat Simple_repeat 2 45 0 1913 98 93 35 chrX 150285071 150285188 -26688952 + MER4-int LTR ERV1 713 822 -5776 263 136 0 45 chrX 150285267 150285311 -26688829 + LTR49 LTR ERV1 272 313 -282 2280 139 75 13 chrX 150285331 150285785 -26688355 + MER4-int LTR ERV1 993 1474 -5124 * 14777 148 122 98 chrX 150285772 150286094 -26688046 + MER4-int LTR ERV1 1585 1898 -4700 2146 114 3 0 chrX 150286094 150286384 -26687756 - AluSg SINE Alu -19 291 1 14777 148 122 98 chrX 150286384 150287519 -26686621 + MER4-int LTR ERV1 1898 3005 -3593 7556 53 7 2 chrX 150287519 150288700 -26685440 + L1PA6 LINE L1 4967 6151 -3 14777 148 122 98 chrX 150288700 150289220 -26684920 + MER4-int LTR ERV1 3005 3511 -3087 288 0 0 0 chrX 150289220 150289252 -26684888 + (TG)n Simple_repeat Simple_repeat 1 32 0 14777 148 122 98 chrX 150289252 150289879 -26684261 + MER4-int LTR ERV1 3511 4122 -2476 1224 88 0 0 chrX 150289879 150290026 -26684114 + AluY SINE Alu 1 147 -164 1969 103 0 0 chrX 150290026 150290287 -26683853 + AluY SINE Alu 51 311 0 14777 148 122 98 chrX 150290287 150292332 -26681808 + MER4-int LTR ERV1 4121 6498 -100 219 146 49 0 chrX 150292443 150292484 -26681656 + MIR SINE MIR 55 97 -111 672 214 121 19 chrX 150292738 150292953 -26681187 - MIR SINE MIR -11 251 15 10124 118 30 3 chrX 150293088 150294514 -26679626 + THE1B-int LTR MaLR 116 1580 0 2675 119 0 19 chrX 150294514 150294885 -26679255 + THE1B LTR MaLR 1 364 0 990 322 24 5 chrX 150295950 150296326 -26677814 - L2 LINE L2 -562 2752 2370 2417 82 0 3 chrX 150296485 150296788 -26677352 + AluY SINE Alu 1 302 -9 224 309 44 0 chrX 150296957 150297025 -26677115 - L2 LINE L2 -1 3271 3201 480 312 85 31 chrX 150297348 150297759 -26676381 + L2 LINE L2 2658 3091 -222 222 267 160 69 chrX 150297909 150298040 -26676100 - MIR3 SINE MIR -36 172 30 235 261 0 0 chrX 150298793 150298852 -26675288 + polypyrimidine Low_complexity Low_complexity 1 59 0 206 93 0 47 chrX 150298864 150298907 -26675233 + (TCTCTG)n Simple_repeat Simple_repeat 2 42 0 519 320 69 46 chrX 150299436 150299743 -26674397 + L2 LINE L2 2798 3118 -154 2198 110 0 0 chrX 150299743 150300033 -26674107 - AluSx SINE Alu -7 305 16 519 320 69 46 chrX 150300033 150300174 -26673966 + L2 LINE L2 3118 3254 -18 452 193 290 7 chrX 150300231 150300376 -26673764 + MER5A DNA MER1_type 4 189 0 300 315 79 65 chrX 150301247 150301650 -26672490 + L2 LINE L2 858 1266 -2048 855 309 121 82 chrX 150301815 150302232 -26671908 + L2 LINE L2 1321 1720 -1594 483 88 20 108 chrX 150302232 150302334 -26671806 - L1MA10 LINE L1 -2 6332 6240 855 309 121 82 chrX 150302334 150303167 -26670973 + L2 LINE L2 1720 2620 -694 879 327 43 32 chrX 150303742 150304179 -26669961 + L2 LINE L2 2804 3245 -68 278 382 140 5 chrX 150305158 150305344 -26668796 - L2 LINE L2 -515 2799 2589 1321 239 173 18 chrX 150305344 150305796 -26668344 - LTR33A LTR ERVL 0 523 2 310 325 219 22 chrX 150305952 150306272 -26667868 - L2 LINE L2 -945 2369 1987 320 264 149 55 chrX 150306987 150307222 -26666918 + L2 LINE L2 3056 3312 -1 357 273 16 41 chrX 150307247 150307368 -26666772 - MIR SINE MIR -62 146 29 361 297 45 9 chrX 150307448 150307559 -26666581 + MIR SINE MIR 13 127 -135 273 253 157 37 chrX 150308097 150308230 -26665910 + MIR3 SINE MIR 41 189 -19 322 317 0 0 chrX 150309333 150309437 -26664703 + L1ME1 LINE L1 5999 6102 -64 1475 283 18 22 chrX 150309446 150310000 -26664140 + L1M4 LINE L1 2558 3109 -3037 272 250 0 28 chrX 150310933 150311005 -26663135 + GA-rich Low_complexity Low_complexity 2 71 0 21 0 0 0 chrX 150311211 150311232 -26662908 + AT_rich Low_complexity Low_complexity 1 21 0 2033 244 77 25 chrX 150311743 150312507 -26661633 + L1M4 LINE L1 4164 4967 -1179 306 0 0 0 chrX 150312507 150312541 -26661599 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1893 182 26 3 chrX 150312554 150312895 -26661245 - MLT2C1 LTR ERVL -48 349 1 377 139 111 28 chrX 150312897 150313005 -26661135 + L1M4 LINE L1 4963 5079 -1067 938 192 28 158 chrX 150313005 150313440 -26660700 - MLT1A2 LTR MaLR 0 374 3 2236 219 60 5 chrX 150313440 150314383 -26659757 + L1MC/D LINE L1 4791 5776 -744 824 216 91 47 chrX 150314379 150314699 -26659441 + L1M4 LINE L1 4789 5122 -1024 * 716 191 69 29 chrX 150314691 150315063 -26659077 + L1MC4a LINE L1 6664 7588 -373 * 605 257 10 24 chrX 150315262 150315468 -26658672 + L1MC5 LINE L1 7702 7904 -57 287 301 28 23 chrX 150315898 150316074 -26658066 + L1M4 LINE L1 3791 3967 -2179 475 326 27 31 chrX 150316446 150316670 -26657470 + L1M4 LINE L1 4365 4587 -1559 372 22 0 0 chrX 150317129 150317174 -26656966 + (TTA)n Simple_repeat Simple_repeat 2 46 0 1274 96 0 55 chrX 150317179 150317378 -26656762 - AluSq SINE Alu -48 265 78 226 211 68 88 chrX 150317386 150317533 -26656607 - MER112 DNA MER1_type -79 181 38 227 206 0 63 chrX 150318002 150318065 -26656075 + C-rich Low_complexity Low_complexity 4 62 0 236 211 6 50 chrX 150318254 150318434 -26655706 + C-rich Low_complexity Low_complexity 2 173 0 333 265 22 44 chrX 150318895 150319076 -26655064 + C-rich Low_complexity Low_complexity 4 180 0 297 295 16 38 chrX 150319492 150319675 -26654465 + C-rich Low_complexity Low_complexity 1 179 0 349 282 22 33 chrX 150320180 150320361 -26653779 + C-rich Low_complexity Low_complexity 1 179 0 308 302 6 39 chrX 150320862 150321044 -26653096 + C-rich Low_complexity Low_complexity 4 179 0 297 295 16 38 chrX 150321537 150321720 -26652420 + C-rich Low_complexity Low_complexity 1 179 0 182 88 0 29 chrX 150322223 150322257 -26651883 + (CCCCCA)n Simple_repeat Simple_repeat 3 35 0 254 254 22 43 chrX 150322274 150322412 -26651728 + C-rich Low_complexity Low_complexity 6 140 0 233 245 10 0 chrX 150322907 150323009 -26651131 + C-rich Low_complexity Low_complexity 6 108 0 440 265 20 27 chrX 150323474 150323621 -26650519 + C-rich Low_complexity Low_complexity 5 150 0 21 0 0 0 chrX 150328015 150328036 -26646104 + AT_rich Low_complexity Low_complexity 1 21 0 216 294 15 0 chrX 150328129 150328197 -26645943 - L2 LINE L2 -23 3249 3181 216 266 75 164 chrX 150329106 150329320 -26644820 - MIR SINE MIR -48 214 20 1658 91 0 4 chrX 150330346 150330578 -26643562 + L1PA14 LINE L1 5930 6160 -1 518 276 84 44 chrX 150330802 150331199 -26642941 + MLT1J2 LTR MaLR 1 450 0 508 312 63 86 chrX 150331228 150331818 -26642322 - L1ME4a LINE L1 -4 6117 5542 189 107 0 0 chrX 150333059 150333087 -26641053 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 323 285 21 8 chrX 150333701 150333818 -26640322 - L1MC3 LINE L1 -1139 6703 6550 300 257 0 29 chrX 150333818 150333888 -26640252 - L1MCa LINE L1 -4364 2062 1995 * 357 224 84 47 chrX 150333830 150333937 -26640203 + L1MC4 LINE L1 6595 6705 -1337 237 267 0 0 chrX 150333938 150334043 -26640097 + (TA)n Simple_repeat Simple_repeat 1 105 0 1679 146 39 0 chrX 150334175 150334455 -26639685 - AluSp SINE Alu -22 291 1 1778 54 0 50 chrX 150335238 150335479 -26638661 - AluY SINE Alu -82 229 1 3572 257 59 26 chrX 150335903 150337673 -26636467 - L1MEc LINE L1 -4420 1976 38 294 312 28 0 chrX 150337801 150337942 -26636198 + L1ME4a LINE L1 5973 6117 -4 22 0 0 0 chrX 150338228 150338250 -26635890 + AT_rich Low_complexity Low_complexity 1 22 0 1896 276 53 21 chrX 150339446 150339909 -26634231 - L1M4 LINE L1 -2892 4065 3618 1654 169 116 6 chrX 150339909 150340263 -26633877 - MSTD LTR MaLR 0 396 4 1896 276 53 21 chrX 150340263 150340707 -26633433 - L1M4 LINE L1 -3339 3618 3129 2319 234 57 54 chrX 150340771 150341647 -26632493 - L1ME1 LINE L1 -51 6115 5234 2524 36 0 3 chrX 150341647 150341952 -26632188 - AluY SINE Alu -7 304 1 2319 234 57 54 chrX 150341952 150342445 -26631695 - L1ME1 LINE L1 -932 5234 4744 1403 156 7 66 chrX 150342438 150342739 -26631401 + L1M2 LINE L1 5526 5808 -504 * 292 283 51 14 chrX 150342739 150342877 -26631263 - L1M4 LINE L1 -4325 2633 2491 426 163 25 25 chrX 150342895 150342975 -26631165 + MLT1D LTR MaLR 3 82 -423 782 188 161 58 chrX 150343011 150343272 -26630868 + MLT1D LTR MaLR 179 504 -1 594 208 101 0 chrX 150343292 150343441 -26630699 - L1M4 LINE L1 -6684 175 12 5897 121 10 8 chrX 150343556 150345228 -26628912 - L1PA15 LINE L1 -3 6162 4480 818 84 0 17 chrX 150345958 150346077 -26628063 + AluY SINE Alu 195 311 0 521 291 231 8 chrX 150346346 150346597 -26627543 + L2 LINE L2 2493 2799 -515 2089 192 27 10 chrX 150346609 150347024 -26627116 + MLT2B1 LTR ERVL 6 395 -125 2563 334 58 6 chrX 150347333 150348358 -26625782 + HERV16 LTR ERVL 475 1553 -3443 491 257 0 0 chrX 150348398 150348503 -26625637 + HERV16 LTR ERVL 1679 1783 -3213 276 250 32 24 chrX 150348505 150348629 -26625511 + (TA)n Simple_repeat Simple_repeat 2 126 0 456 19 0 0 chrX 150348631 150348684 -26625456 + (TG)n Simple_repeat Simple_repeat 2 54 0 393 189 42 133 chrX 150348694 150348837 -26625303 - HERV16 LTR ERVL -1453 3543 3414 * 2798 329 101 26 chrX 150348832 150350524 -26623616 - HERV16 LTR ERVL -2186 3578 1761 2877 333 45 34 chrX 150350622 150350784 -26623356 - HERV16 LTR ERVL -3459 1537 1378 1894 204 11 6 chrX 150350784 150351147 -26622993 + MLT1A1 LTR MaLR 1 365 0 2877 333 45 34 chrX 150351147 150351717 -26622423 - HERV16 LTR ERVL -3618 1378 816 2313 70 0 0 chrX 150351717 150352017 -26622123 - AluY SINE Alu -11 300 1 2877 333 45 34 chrX 150352017 150352713 -26621427 - HERV16 LTR ERVL -4180 816 91 261 309 0 0 chrX 150352795 150352850 -26621290 - LTR16B LTR ERVL -303 161 107 376 202 131 0 chrX 150352854 150352938 -26621202 - MER53 DNA DNA -94 95 1 1063 333 86 34 chrX 150353021 150354058 -26620082 + HERV16 LTR ERVL 4263 5307 -178 711 319 58 8 chrX 150354349 150354609 -26619531 + LTR16A LTR ERVL 172 444 -6 441 287 78 65 chrX 150354624 150355138 -26619002 - L1M4 LINE L1 -935 5211 2910 308 328 17 69 chrX 150355609 150355783 -26618357 + MIR3 SINE MIR 25 189 -19 309 278 0 65 chrX 150356439 150356547 -26617593 + MIR SINE MIR 112 212 -50 554 389 28 18 chrX 150360762 150361160 -26612980 + L3 LINE CR1 1086 1487 -90 214 336 102 16 chrX 150363061 150363189 -26610951 - L2 LINE L2 -5 3308 3170 357 305 142 76 chrX 150363437 150364177 -26609963 - L2 LINE L2 -467 2847 2059 1873 130 24 3 chrX 150364398 150364691 -26609449 - AluSx SINE Alu -11 301 3 387 0 0 0 chrX 150364741 150364784 -26609356 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 437 282 63 7 chrX 150365089 150365231 -26608909 + MIR3 SINE MIR 16 165 -43 185 176 0 78 chrX 150365713 150365764 -26608376 + L2 LINE L2 2703 2749 -565 * 356 331 167 19 chrX 150365760 150366029 -26608111 - L3 LINE CR1 -13 1564 1256 291 141 90 77 chrX 150366057 150366135 -26608005 + MER104 DNA Tc2 44 122 -58 182 245 75 0 chrX 150366187 150366240 -26607900 - L3 LINE CR1 -320 1257 1201 186 275 14 29 chrX 150366659 150366728 -26607412 + MIR3 SINE MIR 140 207 -1 271 170 0 0 chrX 150367721 150367768 -26606372 + AluSg SINE Alu 1 47 -253 1710 113 0 0 chrX 150367854 150368085 -26606055 + AluSg SINE Alu 51 281 -29 266 293 27 0 chrX 150368440 150368515 -26605625 - MIR SINE MIR -64 144 68 1929 229 89 36 chrX 150370784 150371334 -26602806 + MLT1E LTR MaLR 1 579 -14 188 360 96 5 chrX 150371837 150372034 -26602106 - L2 LINE L2 -189 3083 2869 354 305 78 39 chrX 150372834 150372988 -26601152 - MIR3 SINE MIR -11 197 38 757 227 84 0 chrX 150374065 150374268 -26599872 + L1ME3A LINE L1 5945 6164 -6 690 207 52 58 chrX 150374289 150374598 -26599542 + L1MC5 LINE L1 7532 7838 -123 21 0 0 0 chrX 150374636 150374657 -26599483 + AT_rich Low_complexity Low_complexity 1 21 0 571 237 68 63 chrX 150374682 150374763 -26599377 + L1ME3A LINE L1 5947 6026 -144 645 38 0 0 chrX 150374763 150374843 -26599297 + (TG)n Simple_repeat Simple_repeat 1 80 0 571 237 68 63 chrX 150374843 150374968 -26599172 + L1ME3A LINE L1 6026 6154 -16 400 248 18 9 chrX 150375988 150376097 -26598043 - MIR SINE MIR -62 146 37 181 95 24 24 chrX 150377664 150377706 -26596434 + (CCCCG)n Simple_repeat Simple_repeat 4 45 0 21 57 0 0 chrX 150377866 150377901 -26596239 + GC_rich Low_complexity Low_complexity 1 35 0 284 286 0 13 chrX 150378916 150378993 -26595147 + L2 LINE L2 3180 3255 -17 582 200 70 0 chrX 150379149 150379264 -26594876 + MER45A DNA AcHobo 56 178 0 286 298 76 25 chrX 150379411 150379569 -26594571 + L2 LINE L2 3105 3270 -2 327 85 0 0 chrX 150380620 150380667 -26593473 + (TG)n Simple_repeat Simple_repeat 1 47 0 519 290 10 20 chrX 150381247 150381447 -26592693 + MIR SINE MIR 51 248 -14 216 281 90 0 chrX 150381707 150381796 -26592344 - L2 LINE L2 -1047 2267 2171 228 339 100 28 chrX 150382252 150382432 -26591708 - L2 LINE L2 -1486 1828 1636 2857 249 119 75 chrX 150382565 150383406 -26590734 - L2 LINE L2 0 3313 2510 294 29 0 0 chrX 150383406 150383441 -26590699 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2857 249 119 75 chrX 150383441 150384295 -26589845 - L2 LINE L2 -803 2510 1561 193 234 109 0 chrX 150384299 150384363 -26589777 - L2 LINE L2 -2819 495 425 203 335 28 39 chrX 150384442 150384621 -26589519 - L2 LINE L2 -2909 405 229 421 245 68 41 chrX 150384930 150385077 -26589063 - L2 LINE L2 -43 3270 3120 2431 78 7 0 chrX 150385577 150385883 -26588257 - AluY SINE Alu -3 308 1 287 245 53 32 chrX 150386546 150386640 -26587500 - L3 LINE CR1 -89 1488 1393 390 283 79 33 chrX 150387332 150387484 -26586656 - MLT1L LTR MaLR 0 615 457 233 327 83 67 chrX 150387931 150388423 -26585717 - L2 LINE L2 -571 2743 2244 462 319 7 16 chrX 150388477 150388668 -26585472 - MIR SINE MIR -54 208 19 960 285 56 19 chrX 150390169 150390728 -26583412 - L2 LINE L2 0 3313 2724 2576 121 3 8 chrX 150390732 150391122 -26583018 + MLT1B LTR MaLR 3 390 0 226 295 26 0 chrX 150391122 150391200 -26582940 - L2 LINE L2 -588 2726 2647 199 316 0 0 chrX 150391602 150391659 -26582481 + MIR SINE MIR 19 75 -133 830 287 44 86 chrX 150391869 150392357 -26581783 + MLT1J LTR MaLR 1 446 -4 373 19 37 0 chrX 150392809 150392863 -26581277 + (GA)n Simple_repeat Simple_repeat 1 56 0 411 231 0 51 chrX 150393104 150393221 -26580919 - L1MC5 LINE L1 -70 7891 7781 2453 250 66 13 chrX 150393353 150394195 -26579945 - L1ME3A LINE L1 -83 6087 5208 969 248 175 50 chrX 150394222 150394726 -26579414 - L1ME3A LINE L1 -1062 5084 4518 1868 185 50 25 chrX 150394750 150395193 -26578947 + L1MB8 LINE L1 5719 6172 -6 360 0 0 0 chrX 150395195 150395235 -26578905 + (CA)n Simple_repeat Simple_repeat 2 41 0 444 316 114 8 chrX 150395444 150395681 -26578459 + MLT1J LTR MaLR 1 262 -249 1607 104 41 0 chrX 150396322 150396543 -26577597 + MER30 DNA MER1_type 1 230 0 271 296 11 0 chrX 150396914 150397002 -26577138 - MIR SINE MIR -66 142 54 345 314 10 0 chrX 150397832 150397934 -26576206 - MER5A DNA MER1_type -1 188 86 257 273 101 0 chrX 150398239 150398338 -26575802 - MIR SINE MIR -63 145 37 375 237 0 11 chrX 150399148 150399241 -26574899 - L2 LINE L2 0 3313 3222 279 0 0 0 chrX 150399279 150399310 -26574830 + (TG)n Simple_repeat Simple_repeat 1 31 0 882 264 38 24 chrX 150399323 150399696 -26574444 - L2 LINE L2 -239 3074 2698 2758 241 22 50 chrX 150399706 150400114 -26574026 - L1ME2 LINE L1 -10 6088 5670 2439 74 3 0 chrX 150400114 150400411 -26573729 - AluSp SINE Alu -15 298 1 2758 241 22 50 chrX 150400411 150400991 -26573149 - L1ME2 LINE L1 -428 5670 5123 2254 100 0 0 chrX 150401141 150401448 -26572692 - AluSg SINE Alu 0 307 1 2676 202 50 79 chrX 150401627 150401830 -26572310 - L1ME2 LINE L1 -16 6148 5941 2385 76 3 7 chrX 150401830 150402132 -26572008 - AluY SINE Alu -10 301 1 2676 202 50 79 chrX 150402132 150402380 -26571760 - L1ME2 LINE L1 -223 5941 5687 1523 133 45 151 chrX 150402380 150402580 -26571560 - MER1B DNA MER1_type -2373 337 194 2039 123 32 0 chrX 150402580 150402864 -26571276 + AluSx SINE Alu 4 296 -16 1523 133 45 151 chrX 150402864 150403040 -26571100 - MER1B DNA MER1_type -2516 194 1 2676 202 50 79 chrX 150403040 150403424 -26570716 - L1ME2 LINE L1 -477 5687 5293 1802 185 0 7 chrX 150403424 150403721 -26570419 - AluJo SINE Alu -17 295 1 2676 202 50 79 chrX 150403721 150404363 -26569777 - L1ME2 LINE L1 -871 5293 4695 1458 249 16 38 chrX 150404369 150404677 -26569463 - L1ME2 LINE L1 -983 5097 4803 1925 192 37 3 chrX 150404677 150405026 -26569114 + MLT1A1 LTR MaLR 5 365 0 1458 249 16 38 chrX 150405026 150405222 -26568918 - L1ME2 LINE L1 -1277 4803 4604 7757 62 143 4 chrX 150405223 150406295 -26567845 + MER11B LTR ERVK 2 1222 -14 3087 250 93 38 chrX 150406333 150406697 -26567443 - L1ME2 LINE L1 -1469 4611 4269 1535 17 0 0 chrX 150406697 150406870 -26567270 - L1PA3 LINE L1 -4 6151 5979 3087 250 93 38 chrX 150406870 150406910 -26567230 - L1ME2 LINE L1 -1811 4269 4233 306 0 0 0 chrX 150406910 150406944 -26567196 + (TG)n Simple_repeat Simple_repeat 2 35 0 3087 250 93 38 chrX 150406944 150407926 -26566214 - L1ME2 LINE L1 -1847 4233 3147 607 268 200 4 chrX 150407928 150408163 -26565977 + L1 LINE L1 492 772 -6437 5806 201 22 31 chrX 150408276 150409689 -26564451 + L1 LINE L1 3623 5022 -2186 41226 71 6 33 chrX 150409689 150415984 -26558156 + L1MA4A LINE L1 3 6123 -180 497 146 11 0 chrX 150415988 150416077 -26558063 + L1MA4A LINE L1 6191 6280 -23 22 56 0 0 chrX 150416077 150416113 -26558027 + AT_rich Low_complexity Low_complexity 1 36 0 935 188 92 18 chrX 150416120 150416338 -26557802 - MER46A DNA MER2_type -1 235 2 377 187 216 36 chrX 150416217 150416356 -26557784 + MER46A DNA MER2_type 4 167 -69 * 670 243 64 24 chrX 150416348 150416711 -26557429 - L1ME2 LINE L1 -5180 890 511 2340 284 111 3 chrX 150417047 150417807 -26556333 - L2 LINE L2 -602 2712 1871 249 33 0 0 chrX 150417807 150417837 -26556303 + (GA)n Simple_repeat Simple_repeat 1 30 0 668 314 27 18 chrX 150417841 150418064 -26556076 - L2 LINE L2 -1748 1566 1342 24 0 0 0 chrX 150418737 150418761 -26555379 + AT_rich Low_complexity Low_complexity 1 24 0 328 235 230 9 chrX 150418766 150418979 -26555161 - L1ME4a LINE L1 -3 6118 5859 236 259 37 0 chrX 150419230 150419284 -26554856 - MIR3 SINE MIR -48 160 105 612 282 53 34 chrX 150420058 150420264 -26553876 - MIR SINE MIR -11 251 42 1038 225 90 12 chrX 150420406 150420740 -26553400 - Charlie7 DNA MER1_type -1894 718 359 765 217 44 0 chrX 150420749 150421010 -26553130 - L1MB7 LINE L1 -694 5480 5209 3458 182 21 9 chrX 150421013 150421683 -26552457 + L1MB7 LINE L1 5499 6176 -8 1676 348 43 59 chrX 150422096 150422540 -26551600 - L2 LINE L2 -1670 1644 1194 1045 42 14 7 chrX 150422540 150422683 -26551457 + (TTTC)n Simple_repeat Simple_repeat 3 146 0 2108 118 14 0 chrX 150422686 150422973 -26551167 - AluSq SINE Alu -22 291 1 1676 348 43 59 chrX 150422973 150423826 -26550314 - L2 LINE L2 -2122 1192 364 228 317 24 12 chrX 150424049 150424131 -26550009 - MIR SINE MIR -59 149 67 367 305 137 0 chrX 150424302 150424433 -26549707 + L2 LINE L2 3121 3269 -3 228 67 0 0 chrX 150424751 150424781 -26549359 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 279 361 7 7 chrX 150424785 150424929 -26549211 + (TGAG)n Simple_repeat Simple_repeat 4 147 0 * 299 308 0 10 chrX 150424826 150424930 -26549210 + (TGAA)n Simple_repeat Simple_repeat 2 104 0 674 305 52 9 chrX 150426436 150426649 -26547491 - MIR SINE MIR -24 238 17 438 229 0 0 chrX 150427460 150427543 -26546597 - MER96 DNA MER1_type? -84 91 9 237 237 17 17 chrX 150427618 150427677 -26546463 + MIR SINE MIR 106 164 -98 185 62 0 31 chrX 150427869 150427901 -26546239 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1048 313 77 37 chrX 150428232 150428833 -26545307 - L2 LINE L2 -460 2854 2230 361 198 62 0 chrX 150428926 150429007 -26545133 - L2 LINE L2 -1345 1969 1884 2779 262 70 53 chrX 150429010 150430201 -26543939 - L2 LINE L2 -652 2662 1451 321 336 15 23 chrX 150430335 150430466 -26543674 - MIR3 SINE MIR -76 132 3 206 339 48 32 chrX 150431012 150431136 -26543004 - MIR SINE MIR -116 146 21 290 320 68 0 chrX 150431655 150431758 -26542382 + MIR3 SINE MIR 91 200 -8 243 0 0 0 chrX 150431760 150431787 -26542353 + (TC)n Simple_repeat Simple_repeat 2 28 0 1362 227 75 2 chrX 150432368 150432796 -26541344 + Charlie4a DNA MER1_type 44 502 -6 845 253 82 0 chrX 150433494 150433715 -26540425 + MIR SINE MIR 20 262 0 285 292 62 31 chrX 150434240 150434370 -26539770 + L2 LINE L2 2922 3055 -217 234 0 0 0 chrX 150435851 150435877 -26538263 + (TC)n Simple_repeat Simple_repeat 1 26 0 309 341 70 0 chrX 150436759 150436888 -26537252 - MIR SINE MIR -65 143 28 2263 109 16 0 chrX 150437053 150437357 -26536783 + AluSc SINE Alu 1 309 0 491 328 61 28 chrX 150437521 150437768 -26536372 - MIR SINE MIR -3 259 5 240 324 113 21 chrX 150438151 150438293 -26535847 + MER5B DNA MER1_type 9 163 -15 207 245 61 31 chrX 150438417 150438515 -26535625 + (TATATG)n Simple_repeat Simple_repeat 1 101 0 6430 212 24 16 chrX 150438661 150441527 -26532613 + L1MC1 LINE L1 3435 6326 -7 1153 251 88 15 chrX 150441575 150442136 -26532004 + L1ME2 LINE L1 2117 2689 -3526 3637 255 85 37 chrX 150442189 150444170 -26529970 + L1ME2 LINE L1 2996 5071 -1144 8631 170 12 7 chrX 150444173 150446875 -26527265 + L1PB3 LINE L1 3436 6148 -6 23 0 0 0 chrX 150446896 150446919 -26527221 + AT_rich Low_complexity Low_complexity 1 23 0 2311 265 65 9 chrX 150446919 150448011 -26526129 + L1ME2 LINE L1 5061 6214 -19 220 191 0 0 chrX 150448125 150448167 -26525973 + (TGGA)n Simple_repeat Simple_repeat 4 45 0 715 271 84 27 chrX 150448302 150448355 -26525785 + L1ME LINE L1 2105 2154 -4061 2018 187 73 0 chrX 150448355 150448751 -26525389 + MSTB LTR MaLR 2 426 0 715 271 84 27 chrX 150448751 150449261 -26524879 + L1ME LINE L1 2154 2657 -3558 329 214 62 18 chrX 150449276 150449388 -26524752 + L1ME LINE L1 2723 2839 -3376 * 3059 211 65 28 chrX 150449370 150450171 -26523969 + L1M1 LINE L1 2791 3561 -4004 210 37 0 0 chrX 150450171 150450198 -26523942 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3059 211 65 28 chrX 150450198 150450762 -26523378 + L1M1 LINE L1 3561 4206 -3359 1288 214 105 4 chrX 150450762 150451029 -26523111 - AluJo SINE Alu -18 294 1 3059 211 65 28 chrX 150451029 150451172 -26522968 + L1M1 LINE L1 4206 4342 -3223 2264 232 50 28 chrX 150451185 150452304 -26521836 + L1ME LINE L1 4684 5834 -401 1420 228 104 25 chrX 150452324 150452841 -26521299 + L1ME1 LINE L1 5602 6159 -7 243 286 43 0 chrX 150452956 150453026 -26521114 - MIR SINE MIR -85 177 105 270 276 0 92 chrX 150453066 150453164 -26520976 - MIR SINE MIR -100 108 20 249 33 0 0 chrX 150453310 150453340 -26520800 + (TGGGGG)n Simple_repeat Simple_repeat 6 35 0 719 288 171 34 chrX 150453850 150454235 -26519905 + L2 LINE L2 2876 3313 0 183 338 13 40 chrX 150454792 150454943 -26519197 - MIR3 SINE MIR -2 206 60 4614 160 57 52 chrX 150455081 150456593 -26517547 + L1MA9 LINE L1 4738 6290 -22 24 0 0 0 chrX 150456593 150456617 -26517523 + AT_rich Low_complexity Low_complexity 1 24 0 209 302 0 0 chrX 150457675 150457728 -26516412 - L2 LINE L2 -10 3303 3251 581 293 131 4 chrX 150458871 150459100 -26515040 + MIR SINE MIR 2 259 -3 392 212 25 59 chrX 150459891 150460009 -26514131 - MIR SINE MIR -84 178 65 2177 165 11 40 chrX 150460132 150460605 -26513535 - L1MB5 LINE L1 -9 6165 5707 327 329 141 42 chrX 150460804 150461117 -26513023 - L2 LINE L2 -3 3269 2926 572 351 4 8 chrX 150461148 150461396 -26512744 - L2 LINE L2 -556 2758 2512 1363 243 6 9 chrX 150461406 150461727 -26512413 + L2 LINE L2 2005 2324 -990 2578 204 77 103 chrX 150461747 150462983 -26511157 + L1M4 LINE L1 4127 5330 -816 * 6395 151 17 9 chrX 150462979 150465219 -26508921 + L1MA5A LINE L1 4032 6284 -13 1717 77 48 0 chrX 150465219 150465461 -26508679 + L1PA13 LINE L1 5904 6163 0 326 159 75 149 chrX 150465466 150465573 -26508567 + L1M4 LINE L1 5423 5521 -657 181 271 21 0 chrX 150515857 150515905 -26458235 - L3 LINE CR1 -1441 136 88 191 316 0 26 chrX 150516151 150516227 -26457913 - L3 LINE CR1 -1441 136 63 534 219 0 18 chrX 150520841 150520955 -26453185 + MER93a LTR ERV1 291 402 0 1427 236 71 3 chrX 150520962 150521288 -26452852 - L1M4b LINE L1 -6511 348 1 194 79 0 26 chrX 150521340 150521378 -26452762 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1224 170 77 109 chrX 150521385 150521762 -26452378 + MLT1A1 LTR MaLR 1 365 0 21 59 0 44 chrX 150522078 150522146 -26451994 + AT_rich Low_complexity Low_complexity 1 65 0 579 295 26 15 chrX 150522247 150522518 -26451622 - HAL1b LINE L1 -767 1664 310 859 296 48 25 chrX 150522529 150522927 -26451213 + MLT1I LTR MaLR 3 409 0 207 167 0 0 chrX 150522957 150522999 -26451141 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2205 92 7 46 chrX 150523523 150523829 -26450311 - AluSx SINE Alu -18 294 1 691 283 63 0 chrX 150524657 150524862 -26449278 + MLT1I LTR MaLR 4 221 -188 387 269 0 0 chrX 150524892 150524996 -26449144 + MER5B DNA MER1_type 27 130 -48 513 238 20 79 chrX 150525011 150525133 -26449007 - L1ME3 LINE L1 -1 6161 6054 1040 209 67 0 chrX 150525133 150525343 -26448797 - MER58A DNA MER1_type 0 224 1 513 238 20 79 chrX 150525343 150525422 -26448718 - L1ME3 LINE L1 -108 6054 5972 183 220 51 34 chrX 150525427 150525486 -26448654 + MER5B DNA MER1_type 119 178 0 2915 7 0 0 chrX 150526014 150526322 -26447818 - AluYa5 SINE Alu -3 308 1 595 270 58 36 chrX 150526709 150526915 -26447225 - MLT1L LTR MaLR 0 615 384 226 160 0 20 chrX 150527185 150527235 -26446905 - MLT1L LTR MaLR -543 72 24 426 191 21 0 chrX 150527346 150527440 -26446700 + MIR SINE MIR 90 185 -77 305 256 77 26 chrX 150527438 150527555 -26446585 - L2 LINE L2 -1 3312 3190 * 293 250 208 8 chrX 150527726 150527846 -26446294 + MER5A DNA MER1_type 25 168 -21 425 313 93 68 chrX 150529173 150529926 -26444214 + L2 LINE L2 2205 2976 -338 1411 201 66 118 chrX 150532196 150532729 -26441411 - MLT1D LTR MaLR 0 505 1 192 77 0 0 chrX 150532840 150532866 -26441274 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 680 307 39 106 chrX 150532893 150534263 -26439877 + L2 LINE L2 1605 2883 -431 330 304 60 77 chrX 150534327 150534663 -26439477 + L2 LINE L2 2943 3272 0 190 283 0 0 chrX 150534745 150534791 -26439349 + L2 LINE L2 3209 3254 -18 255 220 0 17 chrX 150534926 150534985 -26439155 - L2 LINE L2 0 3272 3215 330 296 10 0 chrX 150535490 150535588 -26438552 - MIR3 SINE MIR -6 202 104 2043 114 91 24 chrX 150535641 150535982 -26438158 + THE1B LTR MaLR 1 364 0 355 253 134 38 chrX 150536002 150536188 -26437952 - MIR SINE MIR -46 216 13 285 376 90 0 chrX 150537385 150537518 -26436622 + L2 LINE L2 2912 3056 -216 220 342 18 27 chrX 150537688 150537799 -26436341 - L2 LINE L2 -232 3040 2931 516 321 61 29 chrX 150537831 150538336 -26435804 - L2 LINE L2 -431 2883 2290 207 100 0 0 chrX 150538373 150538403 -26435737 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 666 162 18 0 chrX 150538407 150538518 -26435622 - FRAM SINE Alu -31 145 33 624 244 122 35 chrX 150538589 150538818 -26435322 + MLT1G LTR MaLR 132 380 -210 433 214 250 11 chrX 150538973 150539131 -26435009 + MLT1G LTR MaLR 375 530 0 542 301 98 13 chrX 150539152 150539531 -26434609 - L2 LINE L2 -1099 2215 1805 181 321 24 12 chrX 150539531 150539615 -26434525 - L2 LINE L2 -1758 1556 1472 21 0 0 0 chrX 150541224 150541245 -26432895 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chrX 150541553 150541581 -26432559 + AT_rich Low_complexity Low_complexity 1 28 0 476 217 125 0 chrX 150542978 150543098 -26431042 + MIR SINE MIR 58 192 -70 314 200 0 25 chrX 150543167 150543247 -26430893 - MIR SINE MIR -73 189 112 364 293 38 15 chrX 150544213 150544346 -26429794 - L2 LINE L2 -16 3256 3121 1601 189 7 13 chrX 150544527 150544828 -26429312 - AluJo SINE Alu -13 299 1 185 91 0 30 chrX 150545338 150545371 -26428769 + (GAAA)n Simple_repeat Simple_repeat 1 32 0 4506 151 40 21 chrX 150546311 150547164 -26426976 + L1MB2 LINE L1 5282 6150 -21 306 73 0 0 chrX 150547164 150547205 -26426935 + (CA)n Simple_repeat Simple_repeat 2 42 0 1946 87 6 80 chrX 150547670 150547982 -26426158 - AluSp SINE Alu -24 289 1 239 0 0 31 chrX 150547983 150548015 -26426125 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 7851 21 0 0 chrX 150548015 150549322 -26424818 - L1PA4 LINE L1 -13 6142 4836 1338 282 64 85 chrX 150549596 150549995 -26424145 - L2 LINE L2 -2 3311 2905 2116 124 0 0 chrX 150549995 150550323 -26423817 + AluY SINE Alu 1 328 0 1338 282 64 85 chrX 150550323 150551250 -26422890 - L2 LINE L2 -408 2905 2007 210 109 0 43 chrX 150551779 150551825 -26422315 + (CAAAAA)n Simple_repeat Simple_repeat 3 46 0 336 83 0 0 chrX 150552450 150552498 -26421642 + (TG)n Simple_repeat Simple_repeat 2 49 0 248 293 53 69 chrX 150552937 150553125 -26421015 - HAL1 LINE L1 -11 2496 2312 237 242 0 61 chrX 150553288 150553354 -26420786 - HAL1 LINE L1 -631 1876 1815 5595 155 34 10 chrX 150553381 150553709 -26420431 - L1MA8 LINE L1 -5 6286 5967 2434 51 0 0 chrX 150553709 150553985 -26420155 - AluY SINE Alu -13 298 23 5595 155 34 10 chrX 150553985 150555293 -26418847 - L1MA8 LINE L1 -324 5967 4613 6244 165 36 21 chrX 150555393 150556144 -26417996 - L1 LINE L1 -1133 5013 4275 216 0 0 0 chrX 150556144 150556168 -26417972 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 6244 165 36 21 chrX 150556168 150556210 -26417930 - L1 LINE L1 -1871 4275 4235 2939 40 0 0 chrX 150556210 150556551 -26417589 + L1PA3 LINE L1 5809 6154 -1 6244 165 36 21 chrX 150556551 150556979 -26417161 - L1 LINE L1 -1911 4235 3773 459 115 0 82 chrX 150557017 150557030 -26417110 + (TA)n Simple_repeat Simple_repeat 1 13 -155 225 0 0 0 chrX 150557030 150557055 -26417085 + (CA)n Simple_repeat Simple_repeat 2 26 0 459 115 0 82 chrX 150557055 150557224 -26416916 + (TA)n Simple_repeat Simple_repeat 13 168 0 680 104 0 67 chrX 150557245 150557438 -26416702 + (TA)n Simple_repeat Simple_repeat 1 180 0 1869 237 77 86 chrX 150557860 150558119 -26416021 + MLT1H1 LTR MaLR 1 261 -294 2341 97 3 3 chrX 150558119 150558428 -26415712 + AluSx SINE Alu 1 309 -3 1869 237 77 86 chrX 150558428 150558762 -26415378 + MLT1H1 LTR MaLR 261 554 -1 246 394 39 4 chrX 150558801 150559032 -26415108 + L2 LINE L2 2832 3070 -202 3105 134 2 21 chrX 150559492 150560020 -26414120 - L1MA5 LINE L1 0 6300 5783 183 205 0 0 chrX 150560023 150560062 -26414078 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 693 94 8 43 chrX 150560065 150560182 -26413958 - L1MA5 LINE L1 -500 5791 5679 1634 180 43 15 chrX 150560482 150560810 -26413330 + MER1B DNA MER1_type 1 337 0 324 248 188 8 chrX 150562708 150562841 -26411299 - MER5A DNA MER1_type -7 182 26 285 134 0 45 chrX 150563030 150563097 -26411043 + L1PB2 LINE L1 6085 6145 -6 25 65 0 0 chrX 150563466 150563512 -26410628 + AT_rich Low_complexity Low_complexity 1 46 0 472 282 39 34 chrX 150563850 150564084 -26410056 + L2 LINE L2 2622 2856 -458 2101 71 14 20 chrX 150564155 150564450 -26409690 + L1PA13 LINE L1 5870 6162 -1 2181 98 23 13 chrX 150564451 150564758 -26409382 + AluSg SINE Alu 1 310 0 1716 202 30 33 chrX 150564999 150565365 -26408775 + MLT1A1 LTR MaLR 1 365 0 403 257 124 14 chrX 150565992 150566202 -26407938 + L2 LINE L2 2444 2676 -638 23 0 0 0 chrX 150567170 150567193 -26406947 + AT_rich Low_complexity Low_complexity 1 23 0 2026 119 3 22 chrX 150567504 150567856 -26406284 - MER4A LTR ERV1 0 664 261 665 104 21 0 chrX 150567856 150567952 -26406188 - MER4A LTR ERV1 -566 98 1 16224 108 49 26 chrX 150567953 150569743 -26404397 - MER4A-int LTR ERV1 0 6598 4724 13597 49 14 13 chrX 150569743 150572315 -26401825 - L1PA3 LINE L1 -3 6152 3577 16224 108 49 26 chrX 150572315 150573224 -26400916 - MER4A-int LTR ERV1 -1874 4724 3837 8896 122 160 113 chrX 150573218 150575786 -26398354 - MER4A-int LTR ERV1 -2912 3686 996 * 239 156 0 44 chrX 150575809 150575854 -26398286 - LTR49 LTR ERV1 -282 313 271 279 0 0 0 chrX 150575931 150575962 -26398178 + (TG)n Simple_repeat Simple_repeat 1 31 0 3483 113 138 18 chrX 150575962 150576623 -26397517 - MER4A-int LTR ERV1 -5792 806 1 1825 133 6 27 chrX 150576626 150576979 -26397161 - MER4A LTR ERV1 0 664 261 315 212 153 0 chrX 150576979 150577064 -26397076 - MER4A LTR ERV1 -566 98 1 344 328 142 13 chrX 150577089 150577400 -26396740 + L1MEd LINE L1 527 877 -5242 863 278 76 42 chrX 150577436 150578025 -26396115 + L1MEd LINE L1 971 1579 -4731 586 277 115 3 chrX 150578215 150578590 -26395550 + L1MEd LINE L1 2119 2535 -3594 264 323 11 105 chrX 150578678 150578944 -26395196 + MERVL LTR ERVL 4706 4946 -539 3631 61 0 2 chrX 150579865 150580324 -26393816 - L1PA7 LINE L1 -4 6150 5693 1458 144 119 7 chrX 150580594 150580725 -26393415 - MER65A LTR ERV1 -2 443 328 186 71 0 0 chrX 150580725 150580753 -26393387 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1458 144 119 7 chrX 150580753 150580906 -26393234 - MER65A LTR ERV1 -117 328 127 846 346 67 65 chrX 150580946 150580959 -26393181 - MER65-int LTR ERV1 -2413 2458 2447 911 378 72 38 chrX 150580959 150581486 -26392654 - LTR57-int LTR ERVL -3806 1537 993 846 346 67 65 chrX 150581486 150581544 -26392596 - MER65-int LTR ERV1 -2424 2447 1860 3631 230 106 61 chrX 150582572 150583314 -26390826 - MER65-int LTR ERV1 -2996 1875 1168 1759 66 0 0 chrX 150583314 150583540 -26390600 + L1PA7 LINE L1 5918 6143 -11 3631 230 106 61 chrX 150583540 150583726 -26390414 - MER65-int LTR ERV1 -3703 1168 992 1429 169 0 15 chrX 150583726 150583999 -26390141 + L1MA4A LINE L1 6029 6297 -6 3631 230 106 61 chrX 150583999 150584708 -26389432 - MER65-int LTR ERV1 -3879 992 163 2026 85 0 4 chrX 150584708 150584980 -26389160 + AluSg SINE Alu 1 271 -39 348 43 0 0 chrX 150584980 150585026 -26389114 + (TC)n Simple_repeat Simple_repeat 2 47 0 436 107 30 48 chrX 150585027 150585195 -26388945 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 342 254 95 24 chrX 150585349 150585475 -26388665 + L1MEd LINE L1 969 1103 -5016 1836 228 76 11 chrX 150585546 150586020 -26388120 - MLT1D LTR MaLR 0 505 1 218 370 0 0 chrX 150586670 150586743 -26387397 - MIR3 SINE MIR -25 183 111 9266 221 29 3 chrX 150586783 150586796 -26387344 - L1P4 LINE L1 -671 5495 5484 2591 148 28 0 chrX 150586796 150587230 -26386910 - L1PA16 LINE L1 0 6166 5721 9266 221 29 3 chrX 150587230 150589540 -26384600 - L1P4 LINE L1 -682 5484 3108 235 272 46 35 chrX 150589679 150589852 -26384288 + L1MCc LINE L1 1299 1473 -4950 250 301 42 7 chrX 150589864 150590007 -26384133 + L1MB5 LINE L1 1755 1902 -4751 4508 222 25 18 chrX 150590016 150591526 -26382614 + L1MB5 LINE L1 4667 6186 -574 5407 123 1 11 chrX 150591933 150592764 -26381376 - L1PA13 LINE L1 -4 6159 5337 * 5579 89 23 24 chrX 150592761 150592883 -26381257 + L1PA11 LINE L1 5347 5468 -706 1994 152 0 0 chrX 150592883 150593180 -26380960 - AluSx SINE Alu -15 297 1 5579 89 23 24 chrX 150593180 150593886 -26380254 + L1PA11 LINE L1 5468 6174 0 237 88 0 0 chrX 150593882 150593916 -26380224 - L1PA13 LINE L1 -824 5350 5317 * 6187 29 1 0 chrX 150593928 150594660 -26379480 - L1PA4 LINE L1 -8 6147 5415 13778 32 0 1 chrX 150594661 150596327 -26377813 + L1PA4 LINE L1 3730 5394 -752 4466 172 14 0 chrX 150596323 150597154 -26376986 - L1PA4 LINE L1 -812 5334 4492 * 2278 218 77 4 chrX 150597155 150597664 -26376476 + L1MB5 LINE L1 6178 6723 -37 489 303 84 21 chrX 150597686 150597970 -26376170 + L1ME3A LINE L1 3546 3847 -2299 1420 263 51 49 chrX 150598118 150599201 -26374939 + L1ME3A LINE L1 4483 5558 -608 976 231 34 0 chrX 150599217 150599451 -26374689 - L1ME1 LINE L1 -6 6955 6714 2275 99 0 3 chrX 150599497 150599799 -26374341 - AluSg SINE Alu -9 301 1 4542 244 34 19 chrX 150600087 150602123 -26372017 - L1ME1 LINE L1 -235 6726 4666 371 284 20 20 chrX 150602126 150602274 -26371866 - L1ME1 LINE L1 -2670 4271 4124 * 1197 223 83 9 chrX 150602268 150602605 -26371535 - L1MB8 LINE L1 -2 6176 5815 334 252 128 26 chrX 150602586 150602852 -26371288 - L1ME1 LINE L1 -2794 4147 3855 * 1201 328 38 32 chrX 150602849 150603728 -26370412 - L1ME1 LINE L1 -5477 946 17 1098 229 57 112 chrX 150603713 150604260 -26369880 + L1ME3A LINE L1 5540 6056 -114 * 981 181 51 0 chrX 150604275 150604512 -26369628 - L1MC3 LINE L1 -8 7777 7529 2748 306 78 10 chrX 150604620 150605608 -26368532 + ERVL LTR ERVL 3588 4642 -1122 1389 204 82 22 chrX 150605689 150606057 -26368083 - MLT1B LTR MaLR 0 390 1 1054 258 28 47 chrX 150606082 150606284 -26367856 + ERVL LTR ERVL 4944 5137 -627 2171 158 9 6 chrX 150606284 150606631 -26367509 + MER7A DNA MER2_type 1 346 0 1054 258 28 47 chrX 150606631 150606792 -26367348 + ERVL LTR ERVL 5137 5300 -464 1639 125 0 0 chrX 150607189 150607413 -26366727 - AluSx SINE Alu -88 224 1 392 269 47 27 chrX 150607847 150607996 -26366144 + MIR3 SINE MIR 35 186 -22 798 272 27 51 chrX 150609282 150609539 -26364601 - MIR SINE MIR -10 252 2 912 89 8 0 chrX 150609586 150609709 -26364431 - L1PA13 LINE L1 -230 5933 5810 3606 32 0 0 chrX 150609755 150610187 -26363953 - L1PA3 LINE L1 0 6155 5724 1264 106 19 10 chrX 150610187 150610394 -26363746 + L1PA13 LINE L1 5948 6156 -7 533 213 88 12 chrX 150610398 150610558 -26363582 + MER114 LTR ERV 477 648 0 183 374 146 24 chrX 150611422 150611545 -26362595 + L2 LINE L2 3118 3255 -17 503 307 55 17 chrX 150612736 150613081 -26361059 + L1M4 LINE L1 2635 2992 -3154 516 264 13 0 chrX 150613086 150613101 -26361039 - L1MA10 LINE L1 -3 6331 6317 461 271 23 70 chrX 150613101 150613359 -26360781 - L1ME1 LINE L1 -10 6156 5911 441 137 0 41 chrX 150613360 150613433 -26360707 + MER81 DNA DNA 1 70 -44 2919 242 56 15 chrX 150613433 150614530 -26359610 - L1ME1 LINE L1 -757 5389 4316 4407 236 43 26 chrX 150614538 150615997 -26358143 - L1ME1 LINE L1 -1974 4172 2689 3512 247 33 9 chrX 150616011 150617058 -26357082 + L1M4 LINE L1 4022 5094 -1052 340 256 0 0 chrX 150617076 150617158 -26356982 + L1ME1 LINE L1 6080 6161 -5 311 281 123 23 chrX 150617205 150617376 -26356764 + L1ME3 LINE L1 4778 4965 -1181 340 266 166 12 chrX 150617486 150617655 -26356485 + L1ME3 LINE L1 5022 5216 -930 2925 210 22 16 chrX 150618294 150618965 -26355175 + L1PA16 LINE L1 4572 5246 -900 4617 103 0 7 chrX 150618965 150619584 -26354556 + L1PA16 LINE L1 5551 6166 0 548 250 60 98 chrX 150620155 150620503 -26353637 + MLT1G-int LTR MaLR 1036 1370 -1 2073 271 62 4 chrX 150620504 150621057 -26353083 + MLT1G LTR MaLR 1 585 -5 2147 253 35 9 chrX 150621068 150621721 -26352419 + L1ME3 LINE L1 5258 5927 -243 313 60 84 12 chrX 150621722 150621805 -26352335 + (TA)n Simple_repeat Simple_repeat 2 90 0 357 274 28 60 chrX 150621805 150622020 -26352120 + L1ME3 LINE L1 5899 6106 -56 240 275 0 29 chrX 150622721 150622790 -26351350 - L2 LINE L2 -1 3312 3246 845 291 73 32 chrX 150623137 150623453 -26350687 - LTR40b LTR ERVL 0 462 134 8118 16 34 15 chrX 150623453 150624437 -26349703 - L1PA4 LINE L1 0 6155 5195 1052 22 29 0 chrX 150624437 150624574 -26349566 + L1P LINE L1 3833 3973 -2173 826 216 21 11 chrX 150624575 150624765 -26349375 - LTR40a LTR ERVL -325 194 3 180 0 0 0 chrX 150624878 150624898 -26349242 + (T)n Simple_repeat Simple_repeat 1 20 0 11543 197 38 19 chrX 150624902 150627563 -26346577 - L1MC3 LINE L1 -8 7777 5066 1229 283 77 27 chrX 150627564 150628722 -26345418 + L1MB7 LINE L1 4733 5947 -237 746 230 36 60 chrX 150628724 150628864 -26345276 + L1ME3A LINE L1 5792 5934 -236 1910 142 19 13 chrX 150628864 150629174 -26344966 + AluJb SINE Alu 1 312 0 746 230 36 60 chrX 150629174 150629649 -26344491 + L1ME3A LINE L1 5934 6165 -5 1132 229 9 103 chrX 150629858 150630285 -26343855 + L1ME3A LINE L1 5551 5937 -233 3374 272 98 40 chrX 150630303 150632208 -26341932 + L1ME4a LINE L1 21 2060 -4881 6698 135 48 11 chrX 150632261 150634449 -26339691 + L1MA3 LINE L1 4030 6300 -5 2255 181 98 14 chrX 150634586 150635077 -26339063 + L1MC3 LINE L1 7246 7777 -8 1570 201 24 3 chrX 150635141 150635434 -26338706 + AluJb SINE Alu 1 299 -13 2950 256 91 65 chrX 150636129 150638040 -26336100 + L1ME4a LINE L1 3452 5313 -1628 2034 125 7 0 chrX 150638040 150638337 -26335803 + AluSx SINE Alu 1 299 -13 2950 256 91 65 chrX 150638337 150638440 -26335700 + L1ME4a LINE L1 5313 5412 -1529 1813 125 46 20 chrX 150638440 150638745 -26335395 - AluSq SINE Alu 0 313 1 2950 256 91 65 chrX 150638745 150639073 -26335067 + L1ME4a LINE L1 5412 5855 -1086 6221 85 6 83 chrX 150639077 150639877 -26334263 - L1PA11 LINE L1 -3 6171 5363 2322 65 0 49 chrX 150639877 150640184 -26333956 - AluY SINE Alu -19 292 1 6221 85 6 83 chrX 150640184 150640415 -26333725 - L1PA11 LINE L1 -811 5363 5116 22 56 0 0 chrX 150640803 150640839 -26333301 + AT_rich Low_complexity Low_complexity 1 36 0 266 311 45 0 chrX 150641117 150641249 -26332891 - L1ME4a LINE L1 -11 6110 5973 3318 241 96 115 chrX 150641372 150642731 -26331409 + L1MEc LINE L1 28 1481 -4915 625 236 21 29 chrX 150642731 150642871 -26331269 + FLAM_C SINE Alu 5 143 0 3318 241 96 115 chrX 150642871 150643358 -26330782 + L1MEc LINE L1 1481 1976 -4420 432 266 0 0 chrX 150644767 150644936 -26329204 + (TA)n Simple_repeat Simple_repeat 2 170 0 213 108 0 0 chrX 150645544 150645581 -26328559 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 274 261 86 102 chrX 150646683 150647185 -26326955 + L1ME4a LINE L1 6344 6837 -79 353 315 175 27 chrX 150647297 150647662 -26326478 - MLT1J2 LTR MaLR -5 445 27 1680 99 21 8 chrX 150647910 150648153 -26325987 - L1PA14 LINE L1 -2 6159 5914 213 329 26 40 chrX 150649165 150649241 -26324899 + MIR SINE MIR 24 98 -164 21 0 0 0 chrX 150650070 150650091 -26324049 + GC_rich Low_complexity Low_complexity 1 21 0 200 290 86 11 chrX 150650268 150650361 -26323779 + L2 LINE L2 3150 3249 -23 327 232 12 12 chrX 150653919 150654001 -26320139 + G-rich Low_complexity Low_complexity 3 84 0 349 239 0 44 chrX 150654428 150654541 -26319599 + G-rich Low_complexity Low_complexity 4 111 0 236 289 22 11 chrX 150654969 150655059 -26319081 + G-rich Low_complexity Low_complexity 4 94 0 265 193 0 23 chrX 150655074 150655162 -26318978 + G-rich Low_complexity Low_complexity 5 90 0 210 216 21 36 chrX 150655612 150655758 -26318382 + G-rich Low_complexity Low_complexity 1 143 0 450 266 38 25 chrX 150656182 150656340 -26317800 + G-rich Low_complexity Low_complexity 3 162 0 221 179 0 60 chrX 150656752 150656819 -26317321 + G-rich Low_complexity Low_complexity 1 63 0 204 40 0 0 chrX 150656841 150656866 -26317274 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 246 256 78 54 chrX 150657349 150657478 -26316662 + MER112 DNA MER1_type 38 169 -91 307 308 97 37 chrX 150657970 150658724 -26315416 - L1M4 LINE L1 -1557 4589 3791 883 272 42 51 chrX 150659153 150659720 -26314420 - L1MC5 LINE L1 -44 7917 7356 * 912 155 14 0 chrX 150659716 150659864 -26314276 - L1MC3 LINE L1 -944 6841 6692 831 251 56 32 chrX 150659856 150660195 -26313945 - L1M4 LINE L1 -1024 5122 4776 * 2564 205 64 9 chrX 150660176 150660972 -26313168 - L1MC3 LINE L1 -756 5390 4922 234 0 0 0 chrX 150660972 150660998 -26313142 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2564 205 64 9 chrX 150660998 150661147 -26312993 - L1MC3 LINE L1 -1224 4922 4783 549 271 12 24 chrX 150661151 150661321 -26312819 + MLT1A2 LTR MaLR 13 180 -194 713 192 0 6 chrX 150661334 150661490 -26312650 + CT-rich Low_complexity Low_complexity 2 156 0 601 232 85 13 chrX 150661494 150661685 -26312455 + MLT1A2 LTR MaLR 187 374 0 377 185 93 9 chrX 150661685 150661793 -26312347 - L1M4 LINE L1 -1067 5079 4963 1877 172 39 3 chrX 150661795 150662132 -26312008 + MLT2C1 LTR ERVL 1 349 -48 2178 259 63 21 chrX 150662161 150662981 -26311159 - L1M4 LINE L1 -1181 4965 4111 414 0 0 0 chrX 150664559 150664605 -26309535 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 258 0 16 chrX 150664608 150664670 -26309470 + GA-rich Low_complexity Low_complexity 4 64 0 1363 248 25 44 chrX 150664673 150665148 -26308992 - L1M4 LINE L1 -3026 3120 2655 243 0 0 0 chrX 150665148 150665175 -26308965 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 436 311 0 0 chrX 150665243 150665365 -26308775 - L1ME1 LINE L1 -54 6112 5991 231 36 0 0 chrX 150665729 150665757 -26308383 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 7838 72 5 1 chrX 150665979 150666944 -26307196 + LTR5 LTR ERVK 1 969 0 399 314 65 45 chrX 150668465 150668710 -26305430 + MIR SINE MIR 13 262 0 183 265 0 0 chrX 150669605 150669654 -26304486 + L2 LINE L2 3221 3269 -3 2232 119 6 3 chrX 150670010 150670321 -26303819 + AluSx SINE Alu 1 312 0 186 71 0 0 chrX 150670473 150670501 -26303639 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 1340 178 60 0 chrX 150670508 150670837 -26303303 - L1MA6 LINE L1 -23 6277 5897 255 125 0 0 chrX 150671794 150671834 -26302306 + (GGA)n Simple_repeat Simple_repeat 3 42 0 183 139 0 0 chrX 150673779 150673815 -26300325 + (G)n Simple_repeat Simple_repeat 1 36 0 339 202 25 0 chrX 150675006 150675125 -26299015 + G-rich Low_complexity Low_complexity 3 124 0 183 114 0 0 chrX 150675142 150675177 -26298963 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 193 305 34 0 chrX 150676027 150676086 -26298054 + MIR SINE MIR 14 74 -188 441 280 47 43 chrX 150676437 150676669 -26297471 - L1M4 LINE L1 -1557 4589 4357 490 299 83 30 chrX 150676813 150677451 -26296689 - L1M4 LINE L1 -1953 4193 3519 895 258 29 48 chrX 150677581 150678139 -26296001 - L1MC5 LINE L1 -44 7917 7371 310 93 0 0 chrX 150678143 150678186 -26295954 - L1MC3 LINE L1 -939 7657 7615 1421 171 48 79 chrX 150678187 150678235 -26295905 + MER2 DNA MER2_type 1 49 -296 370 71 18 0 chrX 150678235 150678291 -26295849 + L1MA2 LINE L1 6241 6297 -7 1421 171 48 79 chrX 150678291 150678598 -26295542 + MER2 DNA MER2_type 49 345 0 5710 210 68 50 chrX 150678598 150682260 -26291880 - L1MC3 LINE L1 -743 6214 3892 1792 139 0 4 chrX 150682264 150682545 -26291595 - L1M1 LINE L1 -5530 2035 1756 369 93 0 0 chrX 150682545 150682599 -26291541 + (TC)n Simple_repeat Simple_repeat 2 55 0 282 253 24 24 chrX 150682618 150682701 -26291439 - L1MC3 LINE L1 -6424 435 353 1021 279 13 16 chrX 150682791 150683103 -26291037 + MER93a LTR ERV1 92 402 0 1303 235 71 3 chrX 150683110 150683434 -26290706 - L1MC3 LINE L1 -6511 348 3 194 79 0 26 chrX 150683488 150683526 -26290614 + (TTTTTA)n Simple_repeat Simple_repeat 2 38 0 1185 170 77 109 chrX 150683533 150683910 -26290230 + MLT1A1 LTR MaLR 1 365 0 21 59 0 44 chrX 150684226 150684294 -26289846 + AT_rich Low_complexity Low_complexity 1 65 0 508 295 26 15 chrX 150684395 150684666 -26289474 - HAL1b LINE L1 -767 1664 310 841 296 48 25 chrX 150684677 150685075 -26289065 + MLT1I LTR MaLR 3 409 0 207 167 0 0 chrX 150685105 150685147 -26288993 + (TAA)n Simple_repeat Simple_repeat 3 44 0 2086 98 10 46 chrX 150685671 150685976 -26288164 - AluSx SINE Alu -18 294 1 627 283 63 0 chrX 150686804 150687009 -26287131 + MLT1I LTR MaLR 4 221 -188 432 269 0 0 chrX 150687039 150687143 -26286997 + MER5B DNA MER1_type 27 130 -48 441 232 16 84 chrX 150687168 150687280 -26286860 - L1ME3 LINE L1 -12 6150 6055 1025 209 67 0 chrX 150687280 150687490 -26286650 - MER58A DNA MER1_type 0 224 1 441 232 16 84 chrX 150687490 150687567 -26286573 - L1ME3 LINE L1 -107 6055 5974 205 220 51 34 chrX 150687574 150687633 -26286507 + MER5B DNA MER1_type 119 178 0 2802 7 3 0 chrX 150688161 150688468 -26285672 - AluYa5 SINE Alu -3 308 1 538 259 34 17 chrX 150688868 150689061 -26285079 - MLT1L LTR MaLR -13 602 384 463 202 20 0 chrX 150689487 150689586 -26284554 + MIR SINE MIR 85 185 -77 347 256 77 26 chrX 150689584 150689701 -26284439 - L2 LINE L2 -1 3312 3190 * 324 250 208 8 chrX 150689872 150689992 -26284148 + MER5A DNA MER1_type 25 168 -21 241 49 0 99 chrX 150691044 150691125 -26283015 + (TA)n Simple_repeat Simple_repeat 2 74 0 4056 191 27 14 chrX 150691135 150692162 -26281978 - L1 LINE L1 -2352 3794 2754 362 292 83 66 chrX 150692164 150692756 -26281384 - HAL1 LINE L1 -1287 1220 619 259 276 124 9 chrX 150692965 150693070 -26281070 - HAL1 LINE L1 -2369 138 22 242 354 10 10 chrX 150693825 150693924 -26280216 - L3 LINE CR1 -467 1110 1012 468 284 56 111 chrX 150694124 150694412 -26279728 - L3 LINE CR1 -730 847 580 1698 131 62 4 chrX 150694412 150694712 -26279428 - AluSx SINE Alu 0 323 9 468 284 56 111 chrX 150694712 150694781 -26279359 - L3 LINE CR1 -997 580 509 227 238 0 0 chrX 150694792 150694834 -26279306 + polypyrimidine Low_complexity Low_complexity 1 42 0 1322 215 8 4 chrX 150694834 150695094 -26279046 - AluJb SINE Alu -4 308 48 280 301 183 44 chrX 150695104 150695333 -26278807 - L3 LINE CR1 -1070 507 247 207 217 0 0 chrX 150695733 150695793 -26278347 + (CA)n Simple_repeat Simple_repeat 2 61 0 467 294 98 19 chrX 150696115 150696268 -26277872 + HAL1b LINE L1 460 600 -748 1189 119 0 36 chrX 150696268 150696461 -26277679 + L1PA13 LINE L1 5959 6144 -19 467 294 98 19 chrX 150696461 150696675 -26277465 + HAL1b LINE L1 600 856 -492 303 292 67 51 chrX 150696805 150697000 -26277140 + HAL1b LINE L1 793 990 -358 192 407 17 17 chrX 150697000 150697118 -26277022 - L3 LINE CR1 -1429 148 31 532 358 81 30 chrX 150697230 150697562 -26276578 - L2 LINE L2 -8 3264 2916 29 0 0 0 chrX 150698274 150698303 -26275837 + AT_rich Low_complexity Low_complexity 1 29 0 740 318 112 61 chrX 150698398 150699049 -26275091 - L3 LINE CR1 -99 1478 795 560 342 4 44 chrX 150699104 150699376 -26274764 + MIR SINE MIR 1 261 -1 235 243 51 18 chrX 150699521 150699627 -26274513 + MIR SINE MIR 24 140 -68 32 0 0 0 chrX 150700732 150700764 -26273376 + AT_rich Low_complexity Low_complexity 1 32 0 383 281 95 61 chrX 150700894 150701189 -26272951 + L2 LINE L2 83 387 -2927 1821 237 34 10 chrX 150701399 150701902 -26272238 - L1ME1 LINE L1 -152 6014 5500 21 0 0 0 chrX 150701909 150701930 -26272210 + AT_rich Low_complexity Low_complexity 1 21 0 2226 104 3 0 chrX 150701935 150702234 -26271906 + AluSg SINE Alu 1 300 -10 1158 211 27 40 chrX 150702397 150702911 -26271229 - L1ME1 LINE L1 -743 5403 4983 1611 166 39 55 chrX 150702970 150703278 -26270862 - AluJo SINE Alu -9 303 1 410 295 110 58 chrX 150703394 150703608 -26270532 - L1MEd LINE L1 -5591 528 327 1803 212 37 45 chrX 150703608 150704117 -26270023 - MLT1D LTR MaLR 0 505 1 410 295 110 58 chrX 150704117 150704319 -26269821 - L1MEd LINE L1 -5792 327 90 2306 86 0 40 chrX 150704321 150704647 -26269493 + AluSq SINE Alu 1 313 0 227 31 31 0 chrX 150704647 150704679 -26269461 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 298 247 12 0 chrX 150704685 150704770 -26269370 - L1MEd LINE L1 -6018 101 16 619 312 25 35 chrX 150704783 150705065 -26269075 + L2 LINE L2 1833 2111 -1203 185 206 63 79 chrX 150705543 150705606 -26268534 + L2 LINE L2 1542 1603 -1711 25 0 0 0 chrX 150706263 150706288 -26267852 + AT_rich Low_complexity Low_complexity 1 25 0 1136 214 21 8 chrX 150706297 150706535 -26267605 - MIR SINE MIR -21 241 1 358 242 45 38 chrX 150706611 150706743 -26267397 - MIR SINE MIR 0 262 130 * 1057 256 78 11 chrX 150706711 150707059 -26267081 + L2 LINE L2 1891 2261 -1053 1896 189 40 33 chrX 150707064 150707299 -26266841 + MLT1C LTR MaLR 1 242 -225 2417 73 3 13 chrX 150707299 150707612 -26266528 + AluY SINE Alu 1 310 -1 1896 189 40 33 chrX 150707612 150707830 -26266310 + MLT1C LTR MaLR 242 457 -10 1449 262 44 68 chrX 150707831 150708473 -26265667 + L2 LINE L2 2260 2885 -429 256 271 9 37 chrX 150708698 150708805 -26265335 + CT-rich Low_complexity Low_complexity 1 104 0 26 64 0 0 chrX 150708931 150708978 -26265162 + AT_rich Low_complexity Low_complexity 1 47 0 364 311 43 55 chrX 150711082 150711246 -26262894 + HAL1 LINE L1 16 177 -2330 1853 226 58 14 chrX 150711703 150712186 -26261954 - MLT1D LTR MaLR -1 504 1 290 206 87 22 chrX 150712388 150712480 -26261660 + HAL1 LINE L1 2267 2364 -143 298 160 13 13 chrX 150712541 150712616 -26261524 + CT-rich Low_complexity Low_complexity 2 76 0 886 263 37 12 chrX 150712647 150712890 -26261250 + MIR SINE MIR 12 260 -2 2379 165 15 38 chrX 150712959 150713437 -26260703 - MLT1C LTR MaLR 0 467 1 360 323 70 11 chrX 150713437 150713722 -26260418 + L1ME4a LINE L1 5490 5791 -330 303 303 61 68 chrX 150713954 150714218 -26259922 + L1ME4a LINE L1 5837 6098 -23 351 261 156 89 chrX 150714759 150715119 -26259021 + L1M2 LINE L1 840 1223 -5626 388 322 37 42 chrX 150715132 150715346 -26258794 + L2 LINE L2 2855 3067 -205 612 277 127 5 chrX 150715983 150716203 -26257937 + MIR SINE MIR 11 257 -5 276 30 0 0 chrX 150716503 150716536 -26257604 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1882 206 31 12 chrX 150716748 150717166 -26256974 + MSTB LTR MaLR 1 426 0 2196 285 84 50 chrX 150717675 150718965 -26255175 - Charlie8 DNA MER1_type -1078 1339 1 185 276 133 57 chrX 150719801 150719906 -26254234 - L2 LINE L2 -23 3249 3137 1834 170 3 6 chrX 150720225 150720536 -26253604 + AluJo SINE Alu 3 312 0 5860 93 6 1 chrX 150722444 150723231 -26250909 + LTR5 LTR ERVK 179 969 0 271 326 23 39 chrX 150723558 150723687 -26250453 - MIR SINE MIR -123 139 13 366 267 10 72 chrX 150725037 150725232 -26248908 + AluJo SINE Alu 120 302 0 235 311 59 42 chrX 150725415 150725534 -26248606 - L2 LINE L2 -580 2734 2614 690 297 110 20 chrX 150726195 150726495 -26247645 - L2 LINE L2 -44 3269 2943 5338 139 26 91 chrX 150726722 150726844 -26247296 - L1 LINE L1 -1216 4930 4802 2721 130 22 45 chrX 150726844 150727337 -26246803 - L1PB4 LINE L1 0 6156 5675 5338 139 26 91 chrX 150727337 150728427 -26245713 - L1 LINE L1 -1344 4802 3796 5244 167 26 21 chrX 150728426 150729308 -26244832 + L1MA6 LINE L1 4898 5783 -517 * 477 0 0 0 chrX 150729308 150729361 -26244779 + (CA)n Simple_repeat Simple_repeat 2 54 0 5244 167 26 21 chrX 150729361 150729882 -26244258 + L1MA6 LINE L1 5783 6300 0 4971 236 22 28 chrX 150730101 150731635 -26242505 - L1M4 LINE L1 -2230 4414 2890 826 252 120 0 chrX 150731613 150731847 -26242293 - L1M4 LINE L1 -6265 277 16 * 904 274 53 20 chrX 150731919 150732218 -26241922 + L2 LINE L2 1981 2289 -1025 1831 238 46 63 chrX 150732222 150732295 -26241845 - L1ME3A LINE L1 -129 5975 5902 2377 199 67 100 chrX 150732295 150733148 -26240992 - MER99 DNA DNA -1 827 3 1831 238 46 63 chrX 150733148 150733725 -26240415 - L1ME3A LINE L1 -202 5902 5336 360 155 0 0 chrX 150733736 150733807 -26240333 + (TG)n Simple_repeat Simple_repeat 2 72 0 618 275 38 48 chrX 150733833 150734229 -26239911 - L1ME3A LINE L1 -798 5282 4891 282 73 0 0 chrX 150734237 150734278 -26239862 + (TC)n Simple_repeat Simple_repeat 2 42 0 362 240 20 87 chrX 150734278 150734474 -26239666 - L1ME3A LINE L1 -1329 4751 4569 3734 77 16 2 chrX 150734633 150735143 -26238997 - L1PA12 LINE L1 0 6168 5652 228 277 77 51 chrX 150735238 150735473 -26238667 - L1ME3A LINE L1 -5144 926 686 754 313 69 69 chrX 150736223 150736940 -26237200 + L2 LINE L2 2606 3311 -2 605 49 12 0 chrX 150738295 150738376 -26235764 + (CA)n Simple_repeat Simple_repeat 2 83 0 22 0 0 0 chrX 150738596 150738618 -26235522 + AT_rich Low_complexity Low_complexity 1 22 0 7696 22 1 0 chrX 150739311 150740460 -26233680 + L1PA3 LINE L1 5002 6151 -4 24 64 0 39 chrX 150740460 150740538 -26233602 + AT_rich Low_complexity Low_complexity 1 75 0 232 299 67 75 chrX 150740624 150740758 -26233382 - MIR SINE MIR -66 196 64 26 30 0 0 chrX 150741890 150741923 -26232217 + AT_rich Low_complexity Low_complexity 1 33 0 1066 283 27 9 chrX 150742358 150742796 -26231344 - L2 LINE L2 -229 3084 2636 874 194 68 68 chrX 150742812 150743008 -26231132 + L1ME1 LINE L1 3943 4141 -2005 1031 127 17 6 chrX 150743008 150743181 -26230959 + L1MB7 LINE L1 5999 6173 -11 874 194 68 68 chrX 150743181 150743263 -26230877 + L1ME1 LINE L1 4140 4221 -1925 2927 230 46 9 chrX 150743273 150744055 -26230085 + L1ME1 LINE L1 4516 5326 -820 303 175 0 0 chrX 150744060 150744117 -26230023 + (TA)n Simple_repeat Simple_repeat 2 58 0 272 278 0 0 chrX 150744117 150744207 -26229933 - L1MC4 LINE L1 -1339 6703 6614 246 206 0 118 chrX 150744169 150744271 -26229869 + L1MC4 LINE L1 6614 6703 -1339 * 2898 204 62 35 chrX 150744292 150745080 -26229060 + L1ME1 LINE L1 5349 6157 -9 203 133 0 0 chrX 150745114 150745144 -26228996 + MIR SINE MIR 5 34 -228 4374 136 67 10 chrX 150745192 150746292 -26227848 - L1PB4 LINE L1 -10 6146 5089 7133 29 1 0 chrX 150746292 150747126 -26227014 + L1PA3 LINE L1 5312 6153 -2 200 128 0 26 chrX 150747154 150747193 -26226947 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 4469 228 16 5 chrX 150747194 150748295 -26225845 - L1 LINE L1 -798 5348 4235 2628 176 59 21 chrX 150748297 150748876 -26225264 + L1MA8 LINE L1 4134 4734 -1412 42423 36 22 3 chrX 150748916 150754948 -26219192 - L1PA2 LINE L1 -4 6151 4 5223 146 70 6 chrX 150754958 150756399 -26217741 + L1MA8 LINE L1 4751 6286 -5 340 267 9 57 chrX 150756400 150756505 -26217635 + MIR SINE MIR 21 120 -142 * 364 274 10 0 chrX 150756504 150756606 -26217534 - L2 LINE L2 -1077 2237 2135 1617 221 11 16 chrX 150757194 150757561 -26216579 + MLT1A1 LTR MaLR 1 365 0 240 250 0 0 chrX 150757697 150757757 -26216383 + L1ME3 LINE L1 6103 6162 0 524 305 76 71 chrX 150758562 150758916 -26215224 + L2 LINE L2 2917 3272 0 374 303 79 36 chrX 150758902 150759067 -26215073 - MIR SINE MIR -70 192 21 * 181 286 0 20 chrX 150759498 150759547 -26214593 + L2 LINE L2 3138 3185 -87 260 255 132 19 chrX 150760402 150760508 -26213632 + MIR SINE MIR 40 157 -105 329 322 9 26 chrX 150760530 150760645 -26213495 - MIR SINE MIR -34 228 116 282 290 10 20 chrX 150760696 150760796 -26213344 + MIR SINE MIR 153 251 -11 413 267 175 3 chrX 150761143 150761342 -26212798 + MLT1J1 LTR MaLR 3 233 -217 451 49 0 0 chrX 150761357 150761418 -26212722 + L1PA4 LINE L1 6092 6152 -3 275 206 132 15 chrX 150761501 150761569 -26212571 + MLT1J1 LTR MaLR 359 434 -12 1104 184 49 15 chrX 150761610 150761877 -26212263 + L1MA8 LINE L1 6010 6285 -6 268 329 111 44 chrX 150762412 150762777 -26211363 + L2 LINE L2 2610 3018 -254 362 318 53 109 chrX 150762941 150763299 -26210841 + L2 LINE L2 2932 3269 -3 388 240 20 20 chrX 150763495 150763595 -26210545 - U6 snRNA snRNA -6 101 2 426 340 112 22 chrX 150764832 150765235 -26208905 + L2 LINE L2 1512 1950 -1364 600 307 39 18 chrX 150765264 150765518 -26208622 + MIR SINE MIR 6 260 -2 460 345 109 44 chrX 150765519 150765577 -26208563 + L2 LINE L2 1948 2001 -1313 1011 298 31 46 chrX 150765577 150765990 -26208150 - MLT1I LTR MaLR -2 407 1 460 345 109 44 chrX 150765990 150766681 -26207459 + L2 LINE L2 2001 2746 -568 381 359 22 74 chrX 150766826 150767096 -26207044 + L2 LINE L2 3017 3272 0 226 271 21 10 chrX 150768010 150768106 -26206034 + (TA)n Simple_repeat Simple_repeat 1 97 0 38 61 0 0 chrX 150768166 150768232 -26205908 + AT_rich Low_complexity Low_complexity 1 66 0 323 252 9 43 chrX 150769640 150769755 -26204385 + L1ME LINE L1 199 309 -5896 323 259 29 36 chrX 150770180 150770319 -26203821 + L1ME LINE L1 456 593 -5612 227 373 186 6 chrX 150770346 150770523 -26203617 + L2 LINE L2 2724 2932 -382 246 250 0 0 chrX 150770530 150770582 -26203558 + MER94 DNA DNA 7 58 -76 262 360 11 34 chrX 150770724 150770902 -26203238 + L1ME LINE L1 527 700 -5505 776 253 56 51 chrX 150770923 150771516 -26202624 + L1ME LINE L1 748 1343 -4862 19905 171 15 8 chrX 150771715 150773808 -26200332 + L1MA4 LINE L1 19 2097 -5468 2393 133 14 3 chrX 150773808 150774177 -26199963 - THE1C LTR MaLR 0 375 3 10293 110 27 41 chrX 150774179 150775781 -26198359 - THE1C-int LTR MaLR 0 1580 1 2584 102 36 3 chrX 150775781 150776144 -26197996 - THE1C LTR MaLR 0 375 1 19905 171 15 8 chrX 150776144 150779374 -26194766 + L1MA4 LINE L1 2096 5381 -2184 278 281 14 50 chrX 150779384 150779523 -26194617 + L1ME LINE L1 1567 1700 -4696 709 293 112 16 chrX 150779524 150779838 -26194302 + L2 LINE L2 2970 3313 0 4930 196 30 22 chrX 150780026 150781140 -26193000 - L1 LINE L1 -2091 4055 2952 2385 115 28 6 chrX 150781140 150781496 -26192644 + THE1B LTR MaLR 1 364 0 1796 181 0 7 chrX 150781502 150781789 -26192351 - AluJo SINE Alu -27 285 1 4930 196 30 22 chrX 150781789 150781980 -26192160 - L1 LINE L1 -3198 2948 2732 4383 189 20 9 chrX 150781990 150783014 -26191126 + L1MA4 LINE L1 5626 6661 -904 2334 99 65 3 chrX 150783016 150783368 -26190772 + THE1C LTR MaLR 2 375 0 9348 121 29 45 chrX 150783373 150783492 -26190648 + THE1C-int LTR MaLR 6 125 -1455 2189 141 0 0 chrX 150783492 150783798 -26190342 + AluSx SINE Alu 1 306 -6 9348 121 29 45 chrX 150783798 150783881 -26190259 + THE1C-int LTR MaLR 125 208 -1372 2063 136 0 3 chrX 150783881 150784182 -26189958 - AluSq SINE Alu -13 300 1 9348 121 29 45 chrX 150784182 150785579 -26188561 + THE1C-int LTR MaLR 208 1580 0 2376 127 16 5 chrX 150785579 150785950 -26188190 + THE1C LTR MaLR 1 375 0 4045 156 5 9 chrX 150785965 150786720 -26187420 + L1MA4 LINE L1 6673 7424 -295 293 123 49 49 chrX 150786750 150786831 -26187309 + L1MB3 LINE L1 6100 6180 -3 423 296 110 33 chrX 150786851 150787152 -26186988 + L1ME LINE L1 2271 2594 -3621 562 256 90 46 chrX 150787327 150787807 -26186333 + L1ME LINE L1 2791 3291 -2924 25 51 0 0 chrX 150787947 150787986 -26186154 + AT_rich Low_complexity Low_complexity 1 39 0 238 143 75 0 chrX 150788276 150788423 -26185717 + (TA)n Simple_repeat Simple_repeat 2 159 0 55 48 0 0 chrX 150788423 150788506 -26185634 + AT_rich Low_complexity Low_complexity 1 83 0 2189 98 0 14 chrX 150788507 150788813 -26185327 + AluSg SINE Alu 1 302 0 860 306 30 19 chrX 150789272 150789746 -26184394 + L1ME3A LINE L1 5363 5841 -329 10889 35 0 0 chrX 150791151 150793220 -26180920 - L1PA4 LINE L1 -2 6153 4078 337 315 71 16 chrX 150794808 150794935 -26179205 - L2 LINE L2 -5 3267 3134 353 364 27 0 chrX 150794972 150795082 -26179058 - L2 LINE L2 0 3272 3160 234 318 141 0 chrX 150796305 150796390 -26177750 - L2 LINE L2 -21 3251 3155 213 170 21 21 chrX 150796904 150796951 -26177189 - L2 LINE L2 -2 3311 3265 1673 167 31 0 chrX 150798628 150798922 -26175218 - MLT1A1 LTR MaLR 0 365 63 315 189 31 44 chrX 150799074 150799233 -26174907 + (TA)n Simple_repeat Simple_repeat 1 157 0 1979 129 58 25 chrX 150800316 150800679 -26173461 + THE1C LTR MaLR 1 375 0 221 233 0 0 chrX 150800808 150800851 -26173289 + CT-rich Low_complexity Low_complexity 2 44 0 253 302 328 0 chrX 150801345 150801537 -26172603 + MIR SINE MIR 3 257 -5 233 236 18 0 chrX 150802321 150802376 -26171764 - L3 LINE CR1 -245 1332 1277 22 0 0 0 chrX 150802383 150802405 -26171735 + AT_rich Low_complexity Low_complexity 1 22 0 35550 83 5 31 chrX 150802550 150808862 -26165278 - L1PA6 LINE L1 0 6154 11 185 286 0 66 chrX 150808879 150808970 -26165170 - L3 LINE CR1 -395 1182 1098 2119 136 7 0 chrX 150809721 150810031 -26164109 - AluSx SINE Alu 0 312 1 454 303 33 13 chrX 150810595 150810777 -26163363 + MIR3 SINE MIR 12 198 -10 1781 29 0 0 chrX 150811263 150811473 -26162667 - L1PA5 LINE L1 -5 6149 5940 1939 103 20 10 chrX 150814402 150814702 -26159438 + AluSg SINE Alu 1 303 -7 192 254 18 0 chrX 150814709 150814764 -26159376 - MIR SINE MIR -23 239 184 38 81 0 0 chrX 150815664 150815751 -26158389 + AT_rich Low_complexity Low_complexity 1 87 0 610 227 49 43 chrX 150816330 150816515 -26157625 + MIR SINE MIR 2 187 -75 183 130 56 0 chrX 150816517 150816571 -26157569 + (TA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chrX 150816651 150816675 -26157465 + AT_rich Low_complexity Low_complexity 1 24 0 961 294 75 19 chrX 150818229 150818695 -26155445 + ERVL LTR ERVL 4762 5253 -511 348 239 64 46 chrX 150819360 150819469 -26154671 - MIR SINE MIR -15 247 137 2010 138 16 42 chrX 150819589 150819974 -26154166 + THE1C LTR MaLR 1 375 0 638 275 79 74 chrX 150820253 150820631 -26153509 + MLT1I LTR MaLR 30 409 0 252 0 0 0 chrX 150821009 150821037 -26153103 + (CA)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chrX 150822013 150822041 -26152099 + AT_rich Low_complexity Low_complexity 1 28 0 304 243 15 103 chrX 150822543 150822679 -26151461 - L1MC4 LINE L1 -1337 6705 6582 1635 195 21 0 chrX 150822896 150823183 -26150957 + AluJo SINE Alu 7 299 -13 2145 80 7 21 chrX 150823696 150824029 -26150111 - AluSg SINE Alu 0 329 1 229 279 38 0 chrX 150824601 150824680 -26149460 + MIR SINE MIR 107 188 -74 668 144 0 0 chrX 150824920 150825017 -26149123 - AluS SINE Alu -215 97 1 623 291 88 66 chrX 150825098 150825552 -26148588 + LTR16B LTR ERVL 1 464 0 1922 135 0 0 chrX 150827396 150827682 -26146458 + AluSx SINE Alu 24 309 0 180 279 59 29 chrX 150828793 150828861 -26145279 + L3 LINE CR1 1118 1187 -390 602 267 146 19 chrX 150829500 150829706 -26144434 + MIR SINE MIR 28 259 -3 183 299 115 0 chrX 150829814 150829901 -26144239 - L3 LINE CR1 -239 1338 1242 250 264 56 0 chrX 150829910 150829982 -26144158 - MIR SINE MIR -179 83 8 * 291 303 82 8 chrX 150829974 150830096 -26144044 + L2 LINE L2 3141 3271 -1 23 78 0 0 chrX 150830546 150830597 -26143543 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chrX 150831108 150831134 -26143006 + (TC)n Simple_repeat Simple_repeat 1 26 0 395 282 123 18 chrX 150831253 150831416 -26142724 + MIR SINE MIR 28 207 -55 669 218 53 0 chrX 150831503 150831673 -26142467 - MER46C DNA MER2_type -44 294 116 403 183 109 36 chrX 150831954 150832091 -26142049 + L1 LINE L1 5127 5273 -873 248 265 108 20 chrX 150833575 150833677 -26140463 - L1ME4a LINE L1 -20 6101 5991 702 197 7 21 chrX 150835666 150835808 -26138332 + FLAM_C SINE Alu 1 140 -3 210 37 0 0 chrX 150836501 150836528 -26137612 + (TG)n Simple_repeat Simple_repeat 2 28 0 718 291 77 39 chrX 150837585 150837974 -26136166 - MER20B DNA MER1_type -376 407 4 2049 190 80 12 chrX 150839440 150839925 -26134215 + L1MC4a LINE L1 7286 7803 -5 269 267 61 30 chrX 150840594 150840725 -26133415 + L2 LINE L2 2929 3063 -209 283 74 19 37 chrX 150842022 150842076 -26132064 - L1ME3A LINE L1 -207 5963 5911 6044 28 1 0 chrX 150842092 150842801 -26131339 - L1PA4 LINE L1 -1 6154 5445 232 348 75 18 chrX 150843773 150844000 -26130140 + L1ME LINE L1 236 475 -5595 2171 273 67 40 chrX 150844120 150845394 -26128746 + L1ME LINE L1 400 1723 -4357 2187 115 10 3 chrX 150845394 150845699 -26128441 - AluSq SINE Alu -6 307 1 2171 273 67 40 chrX 150845699 150846262 -26127878 + L1ME LINE L1 1723 2270 -3810 1136 128 10 25 chrX 150846263 150846452 -26127688 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 3894 143 24 0 chrX 150846452 150847117 -26127023 - L1PA16 LINE L1 -9 6157 5477 5860 49 4 0 chrX 150847117 150847846 -26126294 + L1PA8 LINE L1 5429 6160 -12 1136 128 10 25 chrX 150847846 150847859 -26126281 - Tigger4(Zombi) DNA MER2_type -188 2543 2531 3851 186 23 16 chrX 150847859 150848853 -26125287 - L1PA16 LINE L1 -697 5469 4477 441 162 0 0 chrX 150848948 150849022 -26125118 - L1P4 LINE L1 -351 5815 5742 1608 153 21 0 chrX 150849022 150849303 -26124837 + L1PA16 LINE L1 5879 6166 0 35 41 0 0 chrX 150849597 150849646 -26124494 + AT_rich Low_complexity Low_complexity 1 49 0 299 281 76 45 chrX 150849684 150849908 -26124232 + L1ME LINE L1 4791 5021 -1125 * 719 296 48 48 chrX 150849887 150850262 -26123878 + L1ME LINE L1 5328 5702 -460 389 284 111 25 chrX 150850947 150851109 -26123031 + MIR SINE MIR 32 207 -55 14608 239 56 14 chrX 150851419 150856895 -26117245 + L1P4 LINE L1 2 6221 -595 342 169 77 0 chrX 150856895 150856960 -26117180 + L1PA16 LINE L1 6095 6164 -2 320 349 32 8 chrX 150857017 150857143 -26116997 - MER5B DNA MER1_type -48 130 2 205 326 163 34 chrX 150858088 150858235 -26115905 + L2 LINE L2 3107 3272 0 593 390 65 18 chrX 150858278 150858829 -26115311 + L2 LINE L2 2698 3267 -5 5650 161 73 7 chrX 150858850 150860065 -26114075 + L1PB1 LINE L1 3 1442 -5421 * 11843 178 89 12 chrX 150860062 150864600 -26109540 + L1PB1 LINE L1 1959 6866 -1 359 253 0 142 chrX 150865099 150865289 -26108851 - MER5B DNA MER1_type 0 178 16 239 177 16 0 chrX 150865715 150865777 -26108363 + CT-rich Low_complexity Low_complexity 1 63 0 2796 186 27 12 chrX 150865792 150866378 -26107762 + L1MB5 LINE L1 5572 6166 -8 21 0 0 0 chrX 150866378 150866399 -26107741 + AT_rich Low_complexity Low_complexity 1 21 0 2245 118 0 0 chrX 150866407 150866704 -26107436 - AluSq SINE Alu -16 297 1 2552 75 0 0 chrX 150866715 150867021 -26107119 - AluSc SINE Alu -3 306 1 223 300 11 44 chrX 150867851 150867941 -26106199 + L2 LINE L2 3186 3272 0 1421 322 94 33 chrX 150868138 150868976 -26105164 + L3 LINE CR1 234 1122 -455 741 95 0 0 chrX 150869108 150869203 -26104937 + L1PA5 LINE L1 4 98 -6048 * 36419 64 2 2 chrX 150869193 150874732 -26099408 + L1PA5 LINE L1 617 6153 -1 196 311 0 27 chrX 150874926 150875000 -26099140 + L3 LINE CR1 1133 1204 -373 250 323 0 81 chrX 150875122 150875246 -26098894 + L3 LINE CR1 1413 1526 -51 185 316 168 0 chrX 150875570 150875665 -26098475 - MIR SINE MIR -68 140 30 300 333 56 22 chrX 150876404 150876584 -26097556 - MIR SINE MIR -56 206 21 795 269 167 42 chrX 150877190 150877896 -26096244 + L1M4 LINE L1 3975 4768 -1378 1541 230 39 11 chrX 150877896 150878356 -26095784 + L1M4 LINE L1 3797 4269 -1877 356 233 0 0 chrX 150878352 150878412 -26095728 + L1M4b LINE L1 2 61 -6798 * 699 197 15 0 chrX 150878431 150878563 -26095577 - BC200 scRNA scRNA -66 134 1 2951 268 32 33 chrX 150878563 150879440 -26094700 + L1M4b LINE L1 75 950 -5909 630 112 10 0 chrX 150879489 150879587 -26094553 - L1PB4 LINE L1 -3 6153 6055 1624 185 17 7 chrX 150879597 150879889 -26094251 - AluJo SINE Alu -17 295 1 22 0 0 0 chrX 150880924 150880946 -26093194 + AT_rich Low_complexity Low_complexity 1 22 0 5382 178 10 17 chrX 150880946 150881417 -26092723 - L1MA4 LINE L1 -8 6292 5819 1705 155 49 23 chrX 150881417 150881721 -26092419 + AluJo SINE Alu 1 312 0 5382 178 10 17 chrX 150881721 150883017 -26091123 - L1MA4 LINE L1 -481 5819 4537 2254 87 31 0 chrX 150883101 150883389 -26090751 - AluSx SINE Alu -15 297 1 870 227 25 4 chrX 150883411 150883649 -26090491 - L1MEc LINE L1 -3405 2810 2568 2452 258 99 11 chrX 150883658 150884645 -26089495 - L1MEc LINE L1 -3903 2493 1420 5260 127 5 14 chrX 150884749 150885416 -26088724 - L1PB3 LINE L1 0 6154 5482 2094 105 20 7 chrX 150885416 150885710 -26088430 - AluSc SINE Alu -11 298 1 378 61 0 0 chrX 150885714 150885763 -26088377 + (TTTTA)n Simple_repeat Simple_repeat 1 49 0 2192 101 0 0 chrX 150885763 150886041 -26088099 - AluSg SINE Alu -32 278 1 5260 127 5 14 chrX 150886041 150886207 -26087933 - L1PB3 LINE L1 -673 5481 5323 297 287 37 43 chrX 150886247 150886411 -26087729 - L1MEc LINE L1 -5145 1251 906 1676 258 56 80 chrX 150886495 150887275 -26086865 - L1MEc LINE L1 -5572 824 63 330 266 73 16 chrX 150887351 150887475 -26086665 + L2 LINE L2 2384 2514 -800 249 256 56 24 chrX 150887612 150887737 -26086403 + L1MC4a LINE L1 6338 6466 -1342 2647 235 156 24 chrX 150887751 150888806 -26085334 + L1MC4 LINE L1 6569 7762 -280 371 171 43 0 chrX 150889068 150889138 -26085002 - Tigger5 DNA MER2_type -1 2322 2250 7084 114 18 2 chrX 150890086 150891500 -26082640 + L1MA2 LINE L1 4869 6304 0 1124 174 56 0 chrX 150891671 150891890 -26082250 + AluJb SINE Alu 76 305 0 350 310 26 71 chrX 150892102 150892257 -26081883 - MIR3 SINE MIR -8 200 53 240 266 34 15 chrX 150892407 150892483 -26081657 + MIR SINE MIR 13 92 -116 4621 113 10 1 chrX 150892484 150893157 -26080983 - Tigger1 DNA MER2_type 0 2418 1740 10388 22 0 0 chrX 150893157 150894403 -26079737 + L1P LINE L1 1969 3214 -2932 11208 135 13 3 chrX 150894404 150896133 -26078007 - Tigger1 DNA MER2_type -672 1746 1 192 247 24 47 chrX 150896135 150896220 -26077920 + MIR SINE MIR 124 206 -56 22 0 0 0 chrX 150896551 150896573 -26077567 + AT_rich Low_complexity Low_complexity 1 22 0 329 263 85 0 chrX 150897629 150897747 -26076393 + L1MC4a LINE L1 7246 7373 -435 1000 264 33 0 chrX 150898037 150898279 -26075861 + MIR SINE MIR 2 251 -11 578 293 183 36 chrX 150898352 150898741 -26075399 + L3 LINE CR1 1131 1576 -1 479 305 92 0 chrX 150899162 150899326 -26074814 + LTR33 LTR ERVL 37 215 -306 292 269 56 9 chrX 150899431 150899539 -26074601 + LTR33 LTR ERVL 402 514 -7 306 158 13 40 chrX 150899591 150899667 -26074473 + MER116 DNA Mariner 5 78 -2 447 264 97 21 chrX 150899791 150899935 -26074205 + MIR3 SINE MIR 26 180 -28 182 326 0 0 chrX 150899967 150900010 -26074130 + L2 LINE L2 3143 3185 -87 11160 164 35 21 chrX 150900457 150903699 -26070441 - L1PA15 LINE L1 -2 6163 2875 4596 15 0 0 chrX 150903792 150904317 -26069823 - L1HS LINE L1 -255 5900 5376 2361 4 0 0 chrX 150904317 150904582 -26069558 + L1HS LINE L1 5891 6155 0 264 127 0 0 chrX 150904584 150904639 -26069501 + (A)n Simple_repeat Simple_repeat 1 55 0 1634 174 6 61 chrX 150904663 150904991 -26069149 + AluJo SINE Alu 3 312 0 2067 99 63 0 chrX 150905180 150905464 -26068676 + AluSg SINE Alu 1 302 -8 688 207 0 0 chrX 150905509 150905644 -26068496 - FLAM_A SINE Alu 0 142 8 891 345 39 76 chrX 150906251 150907018 -26067122 - L2 LINE L2 -420 2894 2156 1257 252 65 32 chrX 150907245 150907586 -26066554 + LTR16A1 LTR ERVL 106 457 0 25 31 0 0 chrX 150907619 150907651 -26066489 + AT_rich Low_complexity Low_complexity 1 32 0 492 293 103 37 chrX 150907724 150908045 -26066095 - L2 LINE L2 -1370 1944 1603 205 262 16 16 chrX 150908497 150908558 -26065582 + GA-rich Low_complexity Low_complexity 2 62 0 348 175 12 12 chrX 150909785 150909865 -26064275 + MER116 DNA Mariner 1 80 0 270 253 27 0 chrX 150911378 150911453 -26062687 + L2 LINE L2 2208 2284 -1030 1410 278 26 47 chrX 150911554 150912022 -26062118 + L2 LINE L2 2305 2762 -552 4215 134 45 25 chrX 150912032 150912563 -26061577 - L1MA8 LINE L1 -161 6130 5578 2625 55 0 0 chrX 150912563 150912873 -26061267 - AluY SINE Alu -1 310 1 4215 134 45 25 chrX 150912873 150913097 -26061043 - L1MA8 LINE L1 -713 5578 5360 704 183 14 0 chrX 150913098 150913240 -26060900 + L1MA8 LINE L1 6148 6291 0 1437 272 78 29 chrX 150913262 150913748 -26060392 + L2 LINE L2 2804 3313 0 270 266 187 49 chrX 150913807 150914010 -26060130 + MIR SINE MIR 23 253 -9 183 191 95 0 chrX 150914021 150914063 -26060077 - L2 LINE L2 -4 3268 3223 247 321 167 0 chrX 150914348 150914510 -26059630 + MIR SINE MIR 48 236 -26 2018 300 97 39 chrX 150914534 150915630 -26058510 + L2 LINE L2 728 1886 -1428 450 202 45 0 chrX 150915633 150915722 -26058418 - L2 LINE L2 0 3313 3221 1099 301 105 29 chrX 150915810 150916288 -26057852 + L2 LINE L2 2462 2975 -339 325 282 138 36 chrX 150916301 150916496 -26057644 + L2 LINE L2 3099 3313 0 1372 117 33 0 chrX 150916989 150917202 -26056938 - L1PA11 LINE L1 -3 6171 5952 3583 114 20 27 chrX 150917202 150917492 -26056648 - L1PA11 LINE L1 -466 5702 5411 3194 70 0 0 chrX 150917492 150917905 -26056235 - L1PA6 LINE L1 0 6154 5742 3583 114 20 27 chrX 150917905 150918192 -26055948 - L1PA11 LINE L1 -757 5411 5123 2329 94 0 28 chrX 150918192 150918510 -26055630 - AluY SINE Alu -2 309 1 3583 114 20 27 chrX 150918510 150918886 -26055254 - L1PA11 LINE L1 -1045 5123 4767 1398 117 78 0 chrX 150918879 150919109 -26055031 + L1PA11 LINE L1 4516 4763 -1383 * 512 271 57 43 chrX 150919859 150920235 -26053905 + LTR16C LTR ERVL 76 491 0 196 383 126 13 chrX 150920243 150920624 -26053516 + L2 LINE L2 1442 1865 -1449 478 321 45 50 chrX 150921810 150922187 -26051953 + L1ME3A LINE L1 700 1074 -5298 338 307 63 61 chrX 150922259 150922636 -26051504 + L1ME3A LINE L1 2112 2472 -3912 776 299 107 25 chrX 150922653 150923493 -26050647 + L1ME3A LINE L1 2507 3415 -2967 251 231 120 19 chrX 150923542 150923650 -26050490 + L1ME3A LINE L1 4858 4976 -1406 350 86 0 0 chrX 150923654 150923712 -26050428 - L1MA7 LINE L1 -2 6289 6232 1230 92 0 0 chrX 150923712 150923876 -26050264 - AluSg/x SINE Alu -26 286 123 5627 139 24 16 chrX 150923877 150924669 -26049471 - L1MA7 LINE L1 -47 6244 5439 2301 180 22 28 chrX 150924669 150925129 -26049011 + MSTB2 LTR MaLR 1 457 0 5627 139 24 16 chrX 150925129 150925376 -26048764 - L1MA7 LINE L1 -852 5439 5196 3513 62 17 7 chrX 150925416 150925880 -26048260 - L1PA7 LINE L1 0 6154 5686 3409 53 0 0 chrX 150925880 150926328 -26047812 + L1PA7 LINE L1 5233 5680 -474 2943 176 17 14 chrX 150926331 150926906 -26047234 - L1MA7 LINE L1 -940 5206 4630 * 4067 188 32 56 chrX 150926905 150926965 -26047175 + L1 LINE L1 3648 3708 -2438 2354 96 0 10 chrX 150926965 150927278 -26046862 + AluY SINE Alu 1 310 -1 4067 188 32 56 chrX 150927278 150928241 -26045899 + L1 LINE L1 3708 4647 -1499 1303 282 46 37 chrX 150928245 150929371 -26044769 + L1ME3A LINE L1 4993 6134 -272 * 7355 22 0 0 chrX 150929368 150930237 -26043903 - L1PA3 LINE L1 -910 5236 4368 7689 23 1 0 chrX 150930237 150931168 -26042972 + L1PA3 LINE L1 5223 6154 -1 288 74 19 37 chrX 150931184 150931238 -26042902 + L1ME3A LINE L1 6147 6199 -207 810 307 54 23 chrX 150931564 150932043 -26042097 + L1ME4a LINE L1 5405 5898 -223 701 94 0 0 chrX 150933985 150934081 -26040059 - L1P LINE L1 -4912 1234 1139 21 36 0 0 chrX 150934621 150934649 -26039491 + AT_rich Low_complexity Low_complexity 1 28 0 196 219 370 0 chrX 150934649 150934722 -26039418 - MIR SINE MIR -15 247 148 672 248 116 5 chrX 150935757 150935955 -26038185 - MIR SINE MIR 0 262 43 299 130 19 0 chrX 150937875 150937929 -26036211 + (CAT)n Simple_repeat Simple_repeat 2 56 0 563 241 74 97 chrX 150937929 150938145 -26035995 - MIR SINE MIR -26 236 26 1668 230 54 11 chrX 150939821 150940269 -26033871 + MLT1C LTR MaLR 1 467 0 341 204 194 0 chrX 150941100 150941208 -26032932 + MER94 DNA DNA 5 133 -1 221 328 102 23 chrX 150941624 150941752 -26032388 + MIR SINE MIR 104 241 -21 495 369 40 7 chrX 150943313 150943606 -26030534 - L2 LINE L2 -328 2944 2640 1592 153 29 21 chrX 150944059 150944188 -26029952 + AluJo SINE Alu 1 128 -190 240 35 0 0 chrX 150944188 150944217 -26029923 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1592 153 29 21 chrX 150944217 150944403 -26029737 + AluJo SINE Alu 128 318 0 2078 241 24 44 chrX 150944416 150945055 -26029085 + MLT1E2 LTR MaLR 1 626 0 231 188 0 0 chrX 150945126 150945174 -26028966 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 229 337 30 41 chrX 150945284 150945453 -26028687 - MIR SINE MIR -60 202 36 417 292 50 8 chrX 150946289 150946409 -26027731 + MIR3 SINE MIR 76 200 -8 207 307 67 0 chrX 150946591 150946666 -26027474 - L2 LINE L2 -22 3291 3212 449 321 42 1 chrX 150946894 150947106 -26027034 + L1MB5 LINE L1 4005 4226 -1920 300 250 11 0 chrX 150947211 150947299 -26026841 + L1MB5 LINE L1 4390 4478 -1668 318 194 0 0 chrX 150947383 150947450 -26026690 + (TG)n Simple_repeat Simple_repeat 2 68 0 1512 263 30 22 chrX 150948008 150948472 -26025668 + L1MD2 LINE L1 107 574 -6070 423 0 0 0 chrX 150948592 150948639 -26025501 + (TTA)n Simple_repeat Simple_repeat 2 48 0 384 239 83 0 chrX 150948639 150948748 -26025392 + L1MD2 LINE L1 822 939 -5603 * 4346 231 29 25 chrX 150948743 150950013 -26024127 + L1MA3 LINE L1 10 1957 -5608 4293 180 29 19 chrX 150950023 150950428 -26023712 + L1MA3 LINE L1 3491 3890 -3834 222 62 0 0 chrX 150950428 150950460 -26023680 + (TA)n Simple_repeat Simple_repeat 2 33 0 4293 180 29 19 chrX 150950460 150952927 -26021213 + L1MA3 LINE L1 3890 6573 -1151 1585 174 45 21 chrX 150952927 150953214 -26020926 + AluJo SINE Alu 1 294 -18 4293 180 29 19 chrX 150953214 150954376 -26019764 + L1MA3 LINE L1 6573 7721 -3 36 23 0 0 chrX 150954447 150954490 -26019650 + AT_rich Low_complexity Low_complexity 1 43 0 1245 197 59 112 chrX 150954490 150954884 -26019256 + L1MD2 LINE L1 927 1282 -5260 1729 158 3 20 chrX 150954884 150955176 -26018964 + AluJo SINE Alu 1 287 -25 1245 197 59 112 chrX 150955176 150955360 -26018780 + L1MD2 LINE L1 1282 1474 -5068 * 1624 212 27 7 chrX 150955358 150955763 -26018377 + L1MB5 LINE L1 4915 5327 -819 258 51 26 0 chrX 150955778 150955817 -26018323 + L1MB7 LINE L1 6145 6184 0 4050 175 12 45 chrX 150955860 150956704 -26017436 + L1MB5 LINE L1 5321 6136 -38 1430 208 75 0 chrX 150956709 150957041 -26017099 + L1MD2 LINE L1 1461 1817 -4829 * 2456 256 58 17 chrX 150957028 150957890 -26016250 + L1MD2 LINE L1 3994 4890 -1754 1277 226 14 52 chrX 150957886 150958235 -26015905 + L1MD2 LINE L1 6044 6379 -478 * 5074 157 53 17 chrX 150958246 150959207 -26014933 + L1MC2 LINE L1 5348 6343 -1 998 247 85 74 chrX 150959203 150959661 -26014479 + L1MD2 LINE L1 6379 6841 -16 * 10389 28 1 0 chrX 150959882 150961892 -26012248 + L1PA2 LINE L1 4145 6153 -2 3555 259 87 40 chrX 150961991 150962589 -26011551 + L1ME3A LINE L1 2584 3153 -2993 4629 42 0 7 chrX 150962589 150963164 -26010976 + L1PA4 LINE L1 5585 6155 0 3555 259 87 40 chrX 150963164 150964557 -26009583 + L1ME3A LINE L1 3153 4668 -1478 473 175 29 19 chrX 150964666 150964769 -26009371 + THE1C LTR MaLR 1 104 -271 * 1105 88 24 35 chrX 150964766 150964936 -26009204 + THE1C LTR MaLR 208 375 0 297 0 0 0 chrX 150964954 150964987 -26009153 + (CA)n Simple_repeat Simple_repeat 2 34 0 710 195 90 40 chrX 150965033 150965233 -26008907 + MER6B DNA MER2_type 1 210 0 2551 245 36 38 chrX 150965265 150966418 -26007722 + L1ME3A LINE L1 5013 6165 -5 240 254 95 37 chrX 150966426 150966576 -26007564 + L1M4 LINE L1 4463 4628 -1518 1504 155 39 11 chrX 150966576 150966860 -26007280 + L1MA8 LINE L1 5998 6289 -2 240 254 95 37 chrX 150966860 150966898 -26007242 + L1M4 LINE L1 4628 4662 -1484 248 313 38 125 chrX 150967984 150968409 -26005731 + L2 LINE L2 2367 2754 -560 1556 189 26 26 chrX 150968771 150969083 -26005057 - AluJo SINE Alu 0 312 1 1630 226 59 34 chrX 150969083 150969561 -26004579 - L1MC4 LINE L1 -209 7833 7344 208 358 90 50 chrX 150969609 150969810 -26004330 + L2 LINE L2 2852 3060 -212 24 32 0 0 chrX 150969859 150969890 -26004250 + AT_rich Low_complexity Low_complexity 1 31 0 472 203 8 51 chrX 150970612 150970645 -26003495 - MIR SINE MIR -1 261 228 478 254 28 23 chrX 150970645 150970822 -26003318 - MER104 DNA MER2_type -1 179 2 472 203 8 51 chrX 150970822 150970906 -26003234 - MIR SINE MIR -34 228 149 583 323 110 61 chrX 150970917 150971609 -26002531 + L2 LINE L2 2549 3267 -5 415 327 78 39 chrX 150973067 150973376 -26000764 + L2 LINE L2 2499 2819 -495 843 251 58 59 chrX 150974489 150975046 -25999094 + HAL1 LINE L1 999 1554 -953 * 1247 278 50 34 chrX 150975041 150975358 -25998782 + HAL1 LINE L1 1771 2081 -426 1811 183 52 70 chrX 150975358 150975872 -25998268 + MLT1D LTR MaLR 1 505 0 1247 278 50 34 chrX 150975872 150976172 -25997968 + HAL1 LINE L1 2081 2398 -109 24 53 0 0 chrX 150976526 150976564 -25997576 + AT_rich Low_complexity Low_complexity 1 38 0 582 296 78 32 chrX 150976872 150977305 -25996835 + L1MC2 LINE L1 3874 4326 -1820 * 1152 260 74 26 chrX 150977301 150977912 -25996228 + L1ME1 LINE L1 2916 3555 -2591 2864 75 21 8 chrX 150977913 150978297 -25995843 + MLT2A1 LTR ERVL 1 389 -55 4771 220 52 51 chrX 150978308 150978995 -25995145 + L1ME1 LINE L1 3551 4236 -1938 4713 58 2 13 chrX 150978995 150979604 -25994536 + L1PA7 LINE L1 5547 6148 -6 4771 220 52 51 chrX 150979604 150980160 -25993980 + L1ME1 LINE L1 4236 4790 -1384 825 138 193 6 chrX 150980160 150980341 -25993799 - MER20 DNA MER1_type -4 215 1 4771 220 52 51 chrX 150980341 150981017 -25993123 + L1ME1 LINE L1 4790 5473 -701 5808 179 67 23 chrX 150981019 150982966 -25991174 + L1MC2 LINE L1 4295 6330 -14 2119 104 3 17 chrX 150982966 150983277 -25990863 - AluSx SINE Alu 0 309 3 5808 179 67 23 chrX 150983277 150983291 -25990849 + L1MC2 LINE L1 6330 6342 -2 2295 236 57 42 chrX 150983288 150983738 -25990402 + L1ME1 LINE L1 5475 6099 -235 * 6825 64 14 0 chrX 150983738 150984871 -25989269 + L1PA7 LINE L1 5009 6153 -1 2295 236 57 42 chrX 150984871 150985110 -25989030 + L1ME1 LINE L1 6099 6333 -1 843 268 92 59 chrX 150985183 150986000 -25988140 + L1M4 LINE L1 4487 5330 -816 214 230 287 23 chrX 150986392 150986479 -25987661 - MIR SINE MIR -95 167 58 304 302 138 36 chrX 150986482 150986757 -25987383 + L1ME4a LINE L1 4735 5037 -1109 266 316 26 32 chrX 150987080 150987235 -25986905 + L1ME4a LINE L1 5381 5534 -636 607 319 59 43 chrX 150987329 150987633 -25986507 - L2 LINE L2 -4 3309 3001 341 254 49 16 chrX 150987708 150987830 -25986310 + L1ME4a LINE L1 5797 5922 -199 386 224 161 0 chrX 150987831 150987974 -25986166 + L1ME4a LINE L1 5955 6120 -1 647 308 207 23 chrX 150988040 150988479 -25985661 + L3 LINE CR1 1047 1566 -11 297 68 0 0 chrX 150988578 150988622 -25985518 + (T)n Simple_repeat Simple_repeat 1 44 0 2743 26 0 0 chrX 150988623 150988931 -25985209 + AluYa5 SINE Alu 1 308 -3 349 302 12 0 chrX 150990164 150990250 -25983890 + L2 LINE L2 3134 3220 -52 181 337 47 12 chrX 150990471 150990557 -25983583 + L2 LINE L2 2227 2315 -999 269 265 15 83 chrX 150990570 150990702 -25983438 + MIR3 SINE MIR 77 199 -9 406 340 108 37 chrX 150990782 150991079 -25983061 + L2 LINE L2 2951 3268 -4 253 296 12 12 chrX 150991090 150991171 -25982969 + L2 LINE L2 2718 2798 -516 270 349 28 18 chrX 150991355 150991464 -25982676 - L2 LINE L2 0 3272 3163 1082 198 67 35 chrX 150991694 150992007 -25982133 + MER5C DNA MER1_type 1 323 -1 497 279 152 6 chrX 150992024 150992182 -25981958 + MER5A DNA MER1_type 9 189 0 517 271 57 11 chrX 150992240 150992417 -25981723 - MIR3 SINE MIR -15 193 9 231 308 99 0 chrX 150992828 150992919 -25981221 + L3 LINE CR1 956 1055 -522 715 350 91 19 chrX 150992942 150993262 -25980878 + L3 LINE CR1 1233 1575 -2 738 311 23 27 chrX 150993580 150993840 -25980300 + MIR SINE MIR 2 260 -2 417 103 0 0 chrX 150995162 150995230 -25978910 + (TC)n Simple_repeat Simple_repeat 2 69 0 429 314 50 13 chrX 150996089 150996248 -25977892 + MIR3 SINE MIR 38 202 -6 358 291 109 30 chrX 150996798 150996963 -25977177 - MIR3 SINE MIR -14 194 17 1444 199 104 45 chrX 150997127 150997568 -25976572 - MLT1C LTR MaLR 0 467 1 22 56 0 0 chrX 150997629 150997665 -25976475 + AT_rich Low_complexity Low_complexity 1 36 0 779 279 5 14 chrX 150997829 150998044 -25976096 + L1ME LINE L1 313 525 -5847 444 191 29 29 chrX 150998091 150998196 -25975944 + MER63 DNA MER1_type 11 741 -321 1311 295 29 11 chrX 150998271 150998816 -25975324 + L1ME LINE L1 565 1119 -5253 367 284 45 29 chrX 150998818 150999061 -25975079 + L1ME LINE L1 1069 1389 -4983 3405 149 9 0 chrX 150999071 150999626 -25974514 + L1MA2 LINE L1 3694 4253 -1893 * 6673 116 25 6 chrX 150999618 151000800 -25973340 + L1MA2 LINE L1 5100 6304 0 470 90 13 0 chrX 151000842 151000920 -25973220 + L1MA10 LINE L1 6256 6334 0 1100 300 75 23 chrX 151000924 151001100 -25973040 + L1ME LINE L1 1489 1654 -4909 2274 60 0 7 chrX 151001100 151001408 -25972732 - AluY SINE Alu 0 306 1 1100 300 75 23 chrX 151001408 151001920 -25972220 + L1ME LINE L1 1654 2215 -4348 642 336 11 21 chrX 151001948 151002228 -25971912 + L1MB1 LINE L1 1366 1642 -5854 1089 184 0 5 chrX 151002287 151002499 -25971641 + L1MB3 LINE L1 5969 6179 -4 996 250 86 79 chrX 151002508 151002753 -25971387 + L1MB1 LINE L1 2901 3143 -4422 188 83 0 28 chrX 151002753 151002789 -25971351 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 996 250 86 79 chrX 151002789 151003191 -25970949 + L1MB1 LINE L1 3143 3553 -4012 934 44 0 0 chrX 151003191 151003305 -25970835 - THE1A LTR MaLR 0 355 242 500 152 0 0 chrX 151003281 151003360 -25970780 + THE1A LTR MaLR 85 163 -192 * 2058 190 124 67 chrX 151003360 151003878 -25970262 + L1MB1 LINE L1 4397 4884 -2681 222 37 0 0 chrX 151003878 151003905 -25970235 + (TG)n Simple_repeat Simple_repeat 2 28 0 2058 190 124 67 chrX 151003905 151003916 -25970224 + L1MB1 LINE L1 4884 4893 -2672 2048 107 3 13 chrX 151003916 151004214 -25969926 - AluY SINE Alu -16 295 1 2058 190 124 67 chrX 151004214 151004450 -25969690 + L1MB1 LINE L1 4893 5207 -2358 2118 131 0 0 chrX 151004450 151004747 -25969393 + AluSx SINE Alu 1 297 -15 1381 126 0 0 chrX 151004778 151004992 -25969148 - L1PA10 LINE L1 -856 5290 5077 * 6351 83 5 0 chrX 151004987 151005838 -25968302 + L1PA10 LINE L1 5311 6165 -3 * 6455 203 41 7 chrX 151005830 151005996 -25968144 + L1MB1 LINE L1 5191 5350 -2360 2340 58 0 0 chrX 151005996 151006290 -25967850 - L1PA7 LINE L1 -1 6153 5860 6455 203 41 7 chrX 151006290 151007698 -25966442 + L1MB1 LINE L1 5350 6838 -872 4589 45 2 2 chrX 151007698 151008295 -25965845 + L1PA7 LINE L1 5581 6179 0 6455 203 41 7 chrX 151008295 151008543 -25965597 + L1MB1 LINE L1 6838 7076 -634 1333 114 34 38 chrX 151008536 151008773 -25965367 + L1MB1 LINE L1 7372 7607 -1 * 733 240 43 23 chrX 151008768 151009167 -25964973 + L1MEc LINE L1 2034 2395 -3820 * 1533 247 70 18 chrX 151009180 151009634 -25964506 + L1M3e LINE L1 5 482 -6548 5481 148 32 41 chrX 151009635 151011714 -25962426 + L1MA9 LINE L1 4260 6312 0 847 173 13 13 chrX 151011730 151011880 -25962260 + L1MC1 LINE L1 5979 6128 -205 1422 172 82 0 chrX 151011882 151012138 -25962002 + AluJb SINE Alu 3 279 -33 186 43 0 0 chrX 151012138 151012161 -25961979 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1230 175 9 0 chrX 151012161 151012378 -25961762 + L1MC1 LINE L1 6110 6328 -5 737 279 45 43 chrX 151012381 151012873 -25961267 + L1MEc LINE L1 2389 2881 -3334 256 200 0 0 chrX 151012876 151012926 -25961214 + L1ME LINE L1 5642 5691 -473 2498 154 26 24 chrX 151012926 151013418 -25960722 + L1MA7 LINE L1 5787 6279 -12 1941 161 30 6 chrX 151013582 151013918 -25960222 + MER2 DNA MER2_type 1 344 0 2346 249 83 15 chrX 151013920 151014986 -25959154 + L1M4 LINE L1 4224 5362 -784 * 14687 196 14 11 chrX 151014972 151018120 -25956020 + L1PB1 LINE L1 1009 4146 -2241 315 0 0 0 chrX 151018120 151018155 -25955985 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 14687 196 14 11 chrX 151018155 151019055 -25955085 + L1PB1 LINE L1 4146 5042 -1345 189 0 0 0 chrX 151019055 151019076 -25955064 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 14687 196 14 11 chrX 151019076 151019910 -25954230 + L1PB1 LINE L1 5042 6386 -1 2597 206 61 27 chrX 151019888 151020703 -25953437 + L1ME2 LINE L1 5541 6391 -9 * 974 298 79 19 chrX 151020734 151021633 -25952507 + L1M4 LINE L1 3452 4404 -1742 2426 54 7 0 chrX 151021643 151021938 -25952202 + AluSp SINE Alu 1 297 -16 359 335 13 68 chrX 151022654 151022964 -25951176 + L1ME3A LINE L1 582 874 -5196 442 248 76 30 chrX 151023061 151023325 -25950815 + L1ME3A LINE L1 988 1312 -4819 549 288 99 52 chrX 151025100 151026147 -25947993 + L1ME3A LINE L1 1292 2388 -3873 1167 244 102 47 chrX 151026229 151026897 -25947243 + L1ME3A LINE L1 4526 5246 -852 224 91 23 0 chrX 151026897 151026941 -25947199 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1167 244 102 47 chrX 151026941 151027153 -25946987 + L1ME3A LINE L1 5246 5445 -653 774 231 0 30 chrX 151027168 151027371 -25946769 + MER63A DNA MER1_type 12 208 -2 1280 205 23 17 chrX 151027373 151027675 -25946465 + L1ME3A LINE L1 5442 5745 -359 333 304 0 0 chrX 151027678 151027770 -25946370 + MER58 DNA MER1_type 6 97 -2323 428 235 10 0 chrX 151027784 151027886 -25946254 + MER58 DNA MER1_type 2318 2420 0 771 204 33 24 chrX 151027894 151027917 -25946223 + L1ME3A LINE L1 5744 5765 -339 840 190 86 0 chrX 151027917 151028091 -25946049 + MER5A DNA MER1_type 1 189 0 771 204 33 24 chrX 151028091 151028278 -25945862 + L1ME3A LINE L1 5765 5956 -148 240 154 0 0 chrX 151028341 151028393 -25945747 + GA-rich Low_complexity Low_complexity 2 53 0 660 209 6 62 chrX 151028401 151028578 -25945562 - MLT1A2 LTR MaLR -204 170 4 2326 42 59 0 chrX 151028706 151028995 -25945145 + AluY SINE Alu 1 306 -5 571 290 74 16 chrX 151029246 151030078 -25944062 + L1MEc LINE L1 2150 3023 -3192 22 0 0 0 chrX 151030200 151030222 -25943918 + AT_rich Low_complexity Low_complexity 1 22 0 411 321 58 20 chrX 151031259 151031480 -25942660 + MIR SINE MIR 5 232 -30 274 326 11 27 chrX 151031556 151031734 -25942406 - MIR SINE MIR -41 221 50 2301 251 97 35 chrX 151031913 151032735 -25941405 + L2 LINE L2 944 1816 -1498 2672 175 87 15 chrX 151032739 151033391 -25940749 - L1MA9 LINE L1 -1 6311 5613 393 201 141 0 chrX 151033387 151033536 -25940604 - L1M3c LINE L1 -4776 1189 1020 * 1953 152 18 34 chrX 151033538 151033769 -25940371 + THE1C LTR MaLR 1 225 -150 7646 21 0 1 chrX 151033769 151034709 -25939431 + L1PA4 LINE L1 5211 6149 -6 1953 152 18 34 chrX 151034709 151034858 -25939282 + THE1C LTR MaLR 225 375 0 2163 96 0 126 chrX 151034858 151035287 -25938853 + THE1C-int LTR MaLR 1 375 -1205 5972 138 7 9 chrX 151035296 151036748 -25937392 - L1PB1 LINE L1 0 6151 4705 3062 198 7 12 chrX 151036747 151037466 -25936674 + L1PB1 LINE L1 3989 4703 -1443 * 7656 115 11 6 chrX 151037454 151038636 -25935504 + THE1C-int LTR MaLR 359 1578 -2 2437 112 19 16 chrX 151038638 151039012 -25935128 + THE1C LTR MaLR 1 375 0 2143 266 20 33 chrX 151039012 151039584 -25934556 - L1M3c LINE L1 -4940 1015 506 2443 110 28 0 chrX 151039584 151039938 -25934202 - THE1B LTR MaLR 0 364 1 2143 266 20 33 chrX 151039938 151040097 -25934043 - L1M3c LINE L1 -5449 506 346 1125 242 25 37 chrX 151040160 151040482 -25933658 - L1M3c LINE L1 -5626 329 12 2408 292 145 13 chrX 151040604 151041788 -25932352 + L2 LINE L2 1952 3296 -17 610 143 9 0 chrX 151041788 151041893 -25932247 - MLT1D LTR MaLR -399 106 1 408 269 0 23 chrX 151041916 151042046 -25932094 - MIR SINE MIR -3 259 133 183 412 0 0 chrX 151042085 151042153 -25931987 + L3 LINE CR1 1507 1574 -3 430 295 0 9 chrX 151043977 151044082 -25930058 + MIR SINE MIR 13 116 -146 213 94 0 0 chrX 151044450 151044482 -25929658 + (GA)n Simple_repeat Simple_repeat 1 32 0 326 335 106 0 chrX 151044751 151044921 -25929219 + MER5A DNA MER1_type 2 189 0 278 308 105 21 chrX 151044983 151045126 -25929014 - MIR SINE MIR -30 232 78 474 321 0 8 chrX 151045225 151045359 -25928781 + MIR SINE MIR 17 149 -113 483 77 0 0 chrX 151045362 151045427 -25928713 - MSTB2 LTR MaLR 0 428 364 2441 47 0 0 chrX 151045430 151045747 -25928393 - L1PA5 LINE L1 -1143 5003 4687 7432 32 2 2 chrX 151045747 151046935 -25927205 + L1PA5 LINE L1 5003 6154 0 2278 153 10 8 chrX 151046935 151047334 -25926806 - MSTB2 LTR MaLR -57 400 1 2866 211 87 9 chrX 151047334 151048013 -25926127 - MSTB2-int LTR MaLR 0 1651 920 309 236 11 22 chrX 151048036 151048125 -25926015 + MIR SINE MIR 175 262 0 1757 189 50 14 chrX 151049279 151049639 -25924501 - THE1C LTR MaLR -2 373 1 10147 104 35 40 chrX 151049639 151051227 -25922913 - THE1C-int LTR MaLR 0 1580 1 1898 146 86 14 chrX 151051227 151051577 -25922563 - THE1C LTR MaLR 0 375 1 258 284 35 17 chrX 151051627 151051743 -25922397 - MARNA DNA Mariner -282 304 187 191 414 23 0 chrX 151051770 151051857 -25922283 - L3 LINE CR1 -1449 128 40 250 271 21 62 chrX 151051974 151052118 -25922022 - MER20B DNA MER1_type -642 141 4 429 268 81 8 chrX 151052375 151052584 -25921556 - L2 LINE L2 -3 3310 3024 2391 294 141 25 chrX 151052585 151053805 -25920335 - L2 LINE L2 -668 2646 1285 326 78 39 13 chrX 151053923 151054000 -25920140 + A-rich Low_complexity Low_complexity 2 80 0 301 175 0 0 chrX 151055335 151055398 -25918742 + L1PA16 LINE L1 6104 6166 0 402 280 88 24 chrX 151055718 151055843 -25918297 + MIR3 SINE MIR 57 189 -19 22 0 0 0 chrX 151056042 151056064 -25918076 + AT_rich Low_complexity Low_complexity 1 22 0 1683 169 7 40 chrX 151056631 151056932 -25917208 - AluJo SINE Alu -21 291 1 1435 115 32 39 chrX 151057032 151057311 -25916829 + L1MA8 LINE L1 6009 6285 -6 2368 84 6 0 chrX 151058028 151058372 -25915768 + L1PA2 LINE L1 1546 1891 -4255 26247 23 0 0 chrX 151158372 151162411 -25811729 + L1PA2 LINE L1 2117 6155 0 303 224 0 30 chrX 151162422 151162489 -25811651 - L2 LINE L2 -601 2713 2649 328 312 30 27 chrX 151162502 151162765 -25811375 + L1MC4a LINE L1 5678 5941 -1867 1927 224 107 49 chrX 151162827 151163417 -25810723 + MLT1E2 LTR MaLR 1 624 -2 672 180 16 0 chrX 151163498 151163626 -25810514 - MER5A DNA MER1_type -59 130 1 * 679 308 59 13 chrX 151163626 151163861 -25810279 + MIR SINE MIR 17 262 0 604 313 6 11 chrX 151165375 151165551 -25808589 + MER5B DNA MER1_type 3 177 -1 277 330 18 46 chrX 151166297 151166406 -25807734 + MIR3 SINE MIR 78 183 -25 331 303 18 9 chrX 151166441 151166550 -25807590 - MIR SINE MIR -57 151 42 198 91 0 0 chrX 151166805 151166838 -25807302 + (CA)n Simple_repeat Simple_repeat 2 34 0 310 237 59 0 chrX 151166949 151167067 -25807073 - L1MEc LINE L1 -1480 4735 4611 21 0 0 0 chrX 151167169 151167190 -25806950 + AT_rich Low_complexity Low_complexity 1 21 0 382 227 30 108 chrX 151167206 151167276 -25806864 - L2 LINE L2 -81 3232 3158 2073 141 7 0 chrX 151167276 151167574 -25806566 + AluJo SINE Alu 1 300 -12 382 227 30 108 chrX 151167574 151167706 -25806434 - L2 LINE L2 -155 3158 3046 497 193 99 56 chrX 151167708 151167869 -25806271 - MIR SINE MIR -67 195 28 262 274 120 15 chrX 151167983 151168249 -25805891 - L1MEc LINE L1 -1699 4516 4223 * 1017 248 47 8 chrX 151168231 151168618 -25805522 - L1MEc LINE L1 -3179 3036 2635 859 307 83 17 chrX 151168812 151169512 -25804628 - L1MEc LINE L1 -4594 1802 1057 199 236 0 18 chrX 151169834 151169889 -25804251 + MIR SINE MIR 209 262 0 539 348 80 31 chrX 151169903 151170417 -25803723 - L1M4 LINE L1 -2445 3701 3163 2333 155 54 5 chrX 151170458 151170864 -25803276 - MSTB LTR MaLR 0 426 1 328 188 0 16 chrX 151171001 151171065 -25803075 + MLT1I LTR MaLR 347 409 0 1248 314 142 26 chrX 151172009 151173093 -25801047 - L2 LINE L2 -1 3312 2116 22 0 0 0 chrX 151173344 151173366 -25800774 + AT_rich Low_complexity Low_complexity 1 22 0 2451 43 0 0 chrX 151173761 151174061 -25800079 + L1PA7 LINE L1 5855 6154 0 1748 165 0 0 chrX 151174223 151174496 -25799644 + AluJb SINE Alu 7 279 -33 2257 121 19 25 chrX 151174496 151174861 -25799279 + THE1B LTR MaLR 2 364 0 5405 140 2 5 chrX 151175504 151175933 -25798207 + L1MA5A LINE L1 5366 5795 -502 219 69 0 0 chrX 151175933 151175962 -25798178 + (CA)n Simple_repeat Simple_repeat 2 30 0 5405 140 2 5 chrX 151175962 151176462 -25797678 + L1MA5A LINE L1 5795 6292 -5 501 17 0 0 chrX 151176912 151176970 -25797170 + (CA)n Simple_repeat Simple_repeat 1 58 0 459 350 7 0 chrX 151177196 151177339 -25796801 + MIR3 SINE MIR 2 145 -63 232 188 172 0 chrX 151178373 151178437 -25795703 + MIR SINE MIR 77 151 -111 651 325 43 75 chrX 151178457 151178832 -25795308 - L3 LINE CR1 -1021 556 194 527 67 0 0 chrX 151178838 151178913 -25795227 - L1PA5 LINE L1 0 6154 6080 259 303 286 0 chrX 151179225 151179344 -25794796 - L2 LINE L2 -9 3263 3111 6569 77 21 3 chrX 151180081 151181061 -25793079 + L1PA10 LINE L1 5170 6165 -3 321 289 91 16 chrX 151181853 151181974 -25792166 - L1MEd LINE L1 -5988 131 2 214 256 12 24 chrX 151182945 151183027 -25791113 + (CAGAGA)n Simple_repeat Simple_repeat 4 84 0 242 331 0 55 chrX 151183432 151183559 -25790581 - MIR3 SINE MIR -45 163 44 2547 60 0 0 chrX 151183855 151184155 -25789985 + AluY SINE Alu 2 301 -10 252 111 0 0 chrX 151184177 151184222 -25789918 + (TCTCTG)n Simple_repeat Simple_repeat 4 48 0 * 360 43 0 0 chrX 151184221 151184267 -25789873 + (TG)n Simple_repeat Simple_repeat 1 46 0 410 217 87 81 chrX 151184327 151184488 -25789652 + MLT1J2 LTR MaLR 289 450 0 2020 147 138 29 chrX 151184562 151184785 -25789355 - MLT1C LTR MaLR 0 467 270 447 19 0 0 chrX 151184785 151184837 -25789303 + (TG)n Simple_repeat Simple_repeat 2 53 0 2020 147 138 29 chrX 151184837 151185034 -25789106 - MLT1C LTR MaLR -197 270 1 2221 156 16 8 chrX 151185287 151185672 -25788468 + MLT1B LTR MaLR 1 388 -2 246 62 0 0 chrX 151185797 151185829 -25788311 + (T)n Simple_repeat Simple_repeat 1 32 0 2017 214 136 9 chrX 151186477 151187001 -25787139 - MLT1E LTR MaLR -1 592 3 940 190 6 0 chrX 151187281 151187444 -25786696 + MER5A DNA MER1_type 26 189 0 2211 123 6 6 chrX 151187527 151187878 -25786262 - MLT1B LTR MaLR -2 388 38 1312 173 217 6 chrX 151188125 151188295 -25785845 + MSTD LTR MaLR 1 134 -262 669 47 0 0 chrX 151188295 151188380 -25785760 + (TC)n Simple_repeat Simple_repeat 2 86 0 1312 173 217 6 chrX 151188380 151188532 -25785608 + MSTD LTR MaLR 134 391 -5 1894 166 27 9 chrX 151188839 151189177 -25784963 + MER2 DNA MER2_type 1 344 0 350 136 0 0 chrX 151189642 151189708 -25784432 + LTR37B LTR ERV1 395 460 -8 1456 136 45 11 chrX 151189756 151190043 -25784097 - L1MB3 LINE L1 -25 6158 5862 215 205 0 0 chrX 151190369 151190408 -25783732 - MIR SINE MIR -113 149 111 208 308 39 13 chrX 151190417 151190495 -25783645 - L2 LINE L2 -1 3312 3233 225 103 77 0 chrX 151190565 151190604 -25783536 + MER2 DNA MER2_type 269 310 -35 452 252 126 68 chrX 151190760 151191038 -25783102 - HAL1 LINE L1 -33 2474 2181 228 208 19 19 chrX 151191313 151191366 -25782774 - L1MEd LINE L1 -5506 613 561 226 26 0 53 chrX 151191865 151191903 -25782237 + MER31B LTR ERV1 1 36 -430 1220 136 30 42 chrX 151191909 151192174 -25781966 + MER31A LTR ERV1 215 476 -9 234 183 37 61 chrX 151192179 151192261 -25781879 - HAL1b LINE L1 -515 833 754 873 270 106 19 chrX 151192301 151193108 -25781032 - HAL1 LINE L1 -343 2164 1227 41636 46 3 1 chrX 151193766 151199908 -25774232 + L1PA4 LINE L1 2 6155 0 384 339 49 6 chrX 151200730 151201196 -25772944 + L1M4 LINE L1 4860 5345 -801 567 39 0 0 chrX 151201200 151201321 -25772819 + L1PA2 LINE L1 6078 6198 0 1574 261 25 52 chrX 151201922 151202446 -25771694 - L2 LINE L2 0 3313 2804 282 232 14 29 chrX 151202565 151202634 -25771506 + L2 LINE L2 3205 3272 0 415 291 46 92 chrX 151202707 151202903 -25771237 + MIR3 SINE MIR 11 197 -11 408 313 22 28 chrX 151203232 151203414 -25770726 - MIR3 SINE MIR -4 204 24 831 229 48 41 chrX 151204368 151204660 -25769480 - L1ME1 LINE L1 -10 6156 5863 2291 227 38 11 chrX 151204994 151205650 -25768490 - L1ME1 LINE L1 -1483 4663 3990 363 247 34 55 chrX 151205690 151205836 -25768304 + L1MEd LINE L1 11 153 -5966 625 335 160 30 chrX 151205926 151206850 -25767290 + L2 LINE L2 2054 3095 -177 24 0 0 0 chrX 151206963 151206987 -25767153 + AT_rich Low_complexity Low_complexity 1 24 0 276 306 144 9 chrX 151207047 151207158 -25766982 - L2 LINE L2 -4 3268 3143 202 289 13 26 chrX 151207432 151207508 -25766632 + GA-rich Low_complexity Low_complexity 3 77 0 2417 97 0 10 chrX 151207929 151208239 -25765901 - AluSx SINE Alu -5 307 1 933 231 35 31 chrX 151209193 151209448 -25764692 + MIR SINE MIR 6 261 -1 351 339 71 18 chrX 151210173 151210397 -25763743 + LTR16A LTR ERVL 206 441 -9 751 261 73 20 chrX 151211769 151212014 -25762126 - LTR33 LTR ERVL -226 295 38 313 143 13 13 chrX 151212578 151212655 -25761485 + GA-rich Low_complexity Low_complexity 1 77 0 235 318 38 42 chrX 151213152 151213321 -25760819 - MIR SINE MIR -48 214 47 756 244 44 30 chrX 151214967 151215262 -25758878 - L1ME3A LINE L1 -223 5947 5649 989 197 5 40 chrX 151215262 151215432 -25758708 + MER20 DNA MER1_type 1 163 -56 1616 164 58 106 chrX 151215432 151215848 -25758292 - MSTD LTR MaLR 0 396 1 989 197 5 40 chrX 151215848 151215900 -25758240 + MER20 DNA MER1_type 163 215 -4 452 271 42 18 chrX 151215903 151216069 -25758071 - L1ME3A LINE L1 -515 5655 5486 494 216 10 0 chrX 151216092 151216194 -25757946 - MER67A LTR ERV1 -36 507 405 4060 135 22 0 chrX 151216225 151216892 -25757248 - L1PA16 LINE L1 -9 6157 5476 * 11643 70 8 1 chrX 151216890 151219217 -25754923 - L1PA6 LINE L1 0 6154 3832 6008 36 0 0 chrX 151219217 151219934 -25754206 - L1PA4 LINE L1 -6 6149 5429 3928 53 0 6 chrX 151219934 151220462 -25753678 - L1PA6 LINE L1 -2306 3840 3316 446 287 0 8 chrX 151420465 151420594 -25553546 - MIR SINE MIR -129 133 6 1914 133 3 63 chrX 151421038 151421369 -25552771 - AluSx SINE Alu -1 311 1 607 240 64 60 chrX 151422197 151422430 -25551710 + MIR SINE MIR 23 256 -6 213 94 0 0 chrX 151422455 151422487 -25551653 + (TTCC)n Simple_repeat Simple_repeat 4 35 0 208 317 39 9 chrX 151422710 151422890 -25551250 - MIR SINE MIR 0 262 23 190 309 18 0 chrX 151423204 151423259 -25550881 + L2 LINE L2 3206 3261 -11 258 250 71 12 chrX 151424072 151424156 -25549984 - MIR3 SINE MIR -10 198 110 855 219 32 68 chrX 151424319 151424474 -25549666 + L1MDa LINE L1 2491 2650 -3890 1572 203 7 3 chrX 151424474 151424760 -25549380 - AluJo SINE Alu -25 287 1 855 219 32 68 chrX 151424760 151424960 -25549180 + L1MDa LINE L1 2650 2833 -3707 1259 107 0 11 chrX 151424993 151425170 -25548970 - AluSg/x SINE Alu -16 294 120 1341 185 30 7 chrX 151425174 151425442 -25548698 + MER61C LTR ERV1 14 276 -158 1527 213 25 14 chrX 151425442 151425803 -25548337 + L1 LINE L1 4435 4799 -1347 2409 68 0 7 chrX 151425813 151426122 -25548018 + AluY SINE Alu 1 307 -4 977 99 0 0 chrX 151426681 151426812 -25547328 + AluSg/x SINE Alu 181 311 -1 945 287 44 7 chrX 151426924 151427274 -25546866 - L2 LINE L2 -287 3026 2670 8408 51 14 3 chrX 151427274 151429026 -25545114 - L1PA3 LINE L1 -140 6015 4246 209 345 9 27 chrX 151430615 151430725 -25543415 - MIR SINE MIR -84 124 17 232 218 36 18 chrX 151430734 151430789 -25543351 + MER5A DNA MER1_type 47 102 -87 223 156 22 0 chrX 151430942 151430987 -25543153 - L2 LINE L2 -3 3310 3265 221 304 0 0 chrX 151431806 151431898 -25542242 + (CTG)n Simple_repeat Simple_repeat 1 92 0 219 235 0 0 chrX 151431901 151431999 -25542141 + CT-rich Low_complexity Low_complexity 3 100 0 289 243 0 0 chrX 151432020 151432094 -25542046 + (CTG)n Simple_repeat Simple_repeat 3 76 0 789 175 21 26 chrX 151432852 151433045 -25541095 + L1P LINE L1 3964 4155 -1991 7369 42 7 0 chrX 151433045 151434661 -25539479 + L1PA4 LINE L1 4533 6155 0 789 175 21 26 chrX 151434661 151434677 -25539463 + L1P LINE L1 4155 4170 -1976 26 74 0 0 chrX 151435118 151435172 -25538968 + AT_rich Low_complexity Low_complexity 1 54 0 70 56 0 0 chrX 151435237 151435344 -25538796 + AT_rich Low_complexity Low_complexity 1 107 0 216 0 0 0 chrX 151436449 151436473 -25537667 + (CTG)n Simple_repeat Simple_repeat 2 25 0 509 242 32 42 chrX 151437135 151437325 -25536815 + MIR SINE MIR 18 193 -41 398 292 7 28 chrX 151437335 151437479 -25536661 + L2 LINE L2 3173 3313 0 1215 104 0 0 chrX 151437967 151438121 -25536019 - AluSq SINE Alu -159 154 1 2516 218 41 17 chrX 151438197 151438324 -25535816 - L1ME1 LINE L1 -50 6116 5990 989 283 88 43 chrX 151438324 151438780 -25535360 - L1MB1 LINE L1 -169 5999 5565 230 0 33 0 chrX 151438780 151438810 -25535330 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1852 122 48 0 chrX 151438814 151439084 -25535056 - AluSq SINE Alu -30 283 1 989 283 88 43 chrX 151439084 151439415 -25534725 - L1MB1 LINE L1 -605 5563 2728 422 256 86 37 chrX 151439502 151439771 -25534369 - L1MEd LINE L1 -4914 1205 924 21 0 0 0 chrX 151439868 151439889 -25534251 + AT_rich Low_complexity Low_complexity 1 21 0 7273 60 6 100 chrX 151439892 151440989 -25533151 - SVA Other Other -17 1369 377 773 232 51 28 chrX 151441401 151441655 -25532485 - L1ME1 LINE L1 -985 5161 4902 358 324 43 36 chrX 151441663 151441916 -25532224 + L2 LINE L2 2720 2974 -340 2388 97 0 0 chrX 151443703 151444002 -25530138 - AluSq SINE Alu -14 299 1 1958 170 0 0 chrX 151444244 151444556 -25529584 - AluJb SINE Alu 0 312 1 23 54 0 0 chrX 151444616 151444653 -25529487 + AT_rich Low_complexity Low_complexity 1 37 0 2167 94 7 11 chrX 151444653 151444939 -25529201 - AluSq SINE Alu -28 285 1 378 197 0 0 chrX 151444941 151445007 -25529133 - AluJ/FRAM SINE Alu -7 295 230 409 281 16 8 chrX 151448117 151448238 -25525902 - MLT1A2 LTR MaLR -88 302 181 180 111 0 0 chrX 151448238 151448265 -25525875 + (CGTG)n Simple_repeat Simple_repeat 3 29 0 846 194 6 28 chrX 151448279 151448459 -25525681 - MLT1A2 LTR MaLR -195 179 4 1844 191 18 18 chrX 151449039 151449426 -25524714 - MLT1B LTR MaLR -3 387 1 4966 180 29 11 chrX 151449630 151451142 -25522998 - L1MA7 LINE L1 -1 6290 4755 1710 113 16 39 chrX 151451243 151451500 -25522640 + AluSx SINE Alu 59 309 -3 960 156 0 101 chrX 151451507 151451706 -25522434 + AluJb SINE Alu 121 299 -13 866 126 0 49 chrX 151452403 151452546 -25521594 + FLAM_C SINE Alu 1 136 -7 237 235 123 0 chrX 151452957 151453038 -25521102 + L2 LINE L2 3136 3226 -46 217 355 25 16 chrX 151453626 151453747 -25520393 + L2 LINE L2 2932 3053 -219 1658 140 82 161 chrX 151454046 151454230 -25519910 + MSTA LTR MaLR 1 198 -230 212 57 0 29 chrX 151454230 151454265 -25519875 + (CCCCCA)n Simple_repeat Simple_repeat 3 36 0 1658 140 82 161 chrX 151454265 151454545 -25519595 + MSTA LTR MaLR 198 428 0 213 205 0 0 chrX 151455051 151455090 -25519050 + (TTG)n Simple_repeat Simple_repeat 3 41 0 22 0 0 0 chrX 151455122 151455144 -25518996 + AT_rich Low_complexity Low_complexity 1 22 0 272 281 31 0 chrX 151456937 151457033 -25517107 - L1ME4a LINE L1 -62 6059 5961 389 175 165 10 chrX 151458331 151458434 -25515706 + MIR SINE MIR 31 118 -90 1904 147 0 11 chrX 151459333 151459642 -25514498 + AluJb SINE Alu 4 309 0 357 296 155 43 chrX 151459891 151460168 -25513972 + L2 LINE L2 2225 2532 -782 1091 119 42 158 chrX 151460189 151460258 -25513882 + MER46A DNA MER2_type 7 82 -2649 1961 85 89 0 chrX 151460258 151460568 -25513572 - AluSp SINE Alu 0 335 3 1091 119 42 158 chrX 151460568 151460757 -25513383 + MER46A DNA MER2_type 82 236 0 239 343 82 14 chrX 151461117 151461263 -25512877 + L2 LINE L2 3112 3267 -5 2475 60 6 22 chrX 151461497 151461813 -25512327 + AluY SINE Alu 1 311 0 935 158 64 54 chrX 151462487 151462690 -25511450 - AluJo SINE Alu -33 279 75 3307 123 171 106 chrX 151464005 151465364 -25508776 + pTR5 LTR ERV1 738 2606 0 2151 82 0 0 chrX 151465636 151465918 -25508222 - L1PA8 LINE L1 0 6172 5891 18382 126 12 33 chrX 151465918 151469943 -25504197 - L1P3 LINE L1 -2466 3995 8 2166 107 10 10 chrX 151470150 151470448 -25503692 + AluSx SINE Alu 1 298 -14 258 250 71 12 chrX 151470571 151470655 -25503485 - MIR3 SINE MIR -10 198 110 855 219 32 68 chrX 151470818 151470973 -25503167 + L1MDa LINE L1 2491 2650 -3890 1604 196 7 3 chrX 151470973 151471259 -25502881 - AluJo SINE Alu -25 287 1 855 219 32 68 chrX 151471259 151471459 -25502681 + L1MDa LINE L1 2650 2833 -3707 1259 107 0 11 chrX 151471492 151471669 -25502471 - AluSg/x SINE Alu -16 296 122 1341 185 30 7 chrX 151471673 151471941 -25502199 + MER61C LTR ERV1 14 276 -158 4316 186 51 22 chrX 151471941 151472312 -25501828 + L1MB3 LINE L1 4435 4794 -1389 2252 107 0 3 chrX 151472312 151472611 -25501529 + AluSx SINE Alu 1 298 -14 4316 186 51 22 chrX 151472611 151473580 -25500560 + L1MB3 LINE L1 4794 5825 -358 1586 182 3 46 chrX 151473580 151473887 -25500253 + AluJo SINE Alu 1 294 -18 4316 186 51 22 chrX 151473887 151474253 -25499887 + L1MB3 LINE L1 5825 6179 -4 1211 221 65 97 chrX 151474274 151474844 -25499296 + L1M4 LINE L1 3777 4328 -1818 765 124 57 104 chrX 151474844 151475037 -25499103 + L1MA9 LINE L1 6129 6312 0 2244 184 10 5 chrX 151475048 151475462 -25498678 + L1MDa LINE L1 16 431 -6109 408 307 55 63 chrX 151475860 151476114 -25498026 - L2 LINE L2 -216 3056 2805 227 196 0 0 chrX 151476126 151476172 -25497968 + L2 LINE L2 3268 3313 0 1953 179 21 8 chrX 151476950 151477336 -25496804 + MER61C LTR ERV1 14 404 -30 740 253 23 41 chrX 151477342 151477563 -25496577 + MER61C-int LTR ERV1 1 217 -5000 512 106 0 89 chrX 151477563 151477686 -25496454 + MER61C-int LTR ERV1 343 454 -4763 2440 113 14 21 chrX 151477705 151478128 -25496012 + MER61C-int LTR ERV1 421 840 -4377 8663 89 6 5 chrX 151478128 151479420 -25494720 + MER61C-int LTR ERV1 959 2252 -2965 185 32 0 65 chrX 151479421 151479452 -25494688 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 2377 22 0 0 chrX 151479457 151479732 -25494408 - L1PA3 LINE L1 -4 6151 5877 392 208 39 0 chrX 151480451 151480528 -25493612 - MER96 DNA MER1_type? -95 80 1 180 269 96 0 chrX 151481353 151481405 -25492735 - MIR SINE MIR -117 145 89 3393 176 23 11 chrX 151481705 151482414 -25491726 + L1MB2 LINE L1 5454 6170 -1 1273 145 13 4 chrX 151482418 151482645 -25491495 + L1MB7 LINE L1 5915 6143 -41 277 333 0 0 chrX 151483686 151483788 -25490352 + L1P LINE L1 4904 5005 -1141 2276 99 3 13 chrX 151483798 151484111 -25490029 + AluSx SINE Alu 1 310 -2 248 330 11 11 chrX 151484358 151484446 -25489694 + MIR SINE MIR 58 145 -63 391 302 78 31 chrX 151485797 151485989 -25488151 - MIR3 SINE MIR -5 203 3 2401 135 7 7 chrX 151486178 151486717 -25487423 + L1M1 LINE L1 5101 5638 -666 338 276 19 57 chrX 151486723 151486987 -25487153 + HAL1 LINE L1 830 1083 -1424 2578 282 23 17 chrX 151487004 151487823 -25486317 + L1PA13 LINE L1 1 824 -5963 697 245 5 30 chrX 151487814 151488014 -25486126 + L1PA13 LINE L1 1333 1527 -5260 * 1765 179 33 0 chrX 151489659 151490057 -25484083 + AluJo SINE Alu 1 408 0 186 43 0 0 chrX 151490057 151490080 -25484060 + (GGGGA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chrX 151490657 151490678 -25483462 + AT_rich Low_complexity Low_complexity 1 21 0 764 283 64 5 chrX 151490712 151490931 -25483209 + L1MDb LINE L1 210 441 -5968 2202 156 2 19 chrX 151490964 151491374 -25482766 + MER4C-int LTR ERV1 6195 6597 -1 3097 82 62 2 chrX 151491380 151491819 -25482321 + MER4C LTR ERV1 1 465 0 22 0 0 0 chrX 151491894 151491916 -25482224 + AT_rich Low_complexity Low_complexity 1 22 0 334 356 37 7 chrX 151492191 151492326 -25481814 + MIR SINE MIR 3 141 -121 2178 75 65 3 chrX 151492344 151492637 -25481503 - AluY SINE Alu 0 311 1 728 184 29 82 chrX 151492637 151492843 -25481297 - MER58A DNA MER1_type -11 213 19 276 30 0 0 chrX 151492947 151492980 -25481160 + (CA)n Simple_repeat Simple_repeat 2 34 0 1871 224 27 36 chrX 151492998 151493110 -25481030 - L1M4 LINE L1 -2324 4633 4521 2418 35 42 3 chrX 151493110 151493399 -25480741 - AluY SINE Alu -11 300 1 1871 224 27 36 chrX 151493399 151493917 -25480223 - L1M4 LINE L1 -2436 4521 4009 198 208 0 0 chrX 151493930 151493978 -25480162 + CT-rich Low_complexity Low_complexity 2 49 0 973 250 124 26 chrX 151494001 151494381 -25479759 - L1M4 LINE L1 -6425 434 18 286 337 36 72 chrX 151495048 151495241 -25478899 + L2 LINE L2 3087 3272 0 219 281 104 31 chrX 151495651 151495747 -25478393 - L3 LINE CR1 -903 674 572 204 40 0 0 chrX 151495955 151495980 -25478160 + (TA)n Simple_repeat Simple_repeat 2 26 0 2139 76 0 50 chrX 151495980 151496281 -25477859 - AluSx SINE Alu -26 286 1 2738 87 42 14 chrX 151496999 151497375 -25476765 + MLT2A1 LTR ERVL 6 370 -74 483 63 0 0 chrX 151497375 151497438 -25476702 + (TG)n Simple_repeat Simple_repeat 2 64 0 342 0 0 0 chrX 151497437 151497475 -25476665 + (TA)n Simple_repeat Simple_repeat 1 38 0 2738 87 42 14 chrX 151497438 151497474 -25476666 + MLT2A1 LTR ERVL 370 404 -40 351 0 0 0 chrX 151497474 151497513 -25476627 + (GA)n Simple_repeat Simple_repeat 2 40 0 2738 87 42 14 chrX 151497513 151497563 -25476577 + MLT2A1 LTR ERVL 404 444 0 254 327 35 9 chrX 151497584 151497697 -25476443 - MIR SINE MIR -69 139 24 796 333 74 33 chrX 151497866 151498352 -25475788 - L2 LINE L2 -1 3312 2807 2308 56 0 0 chrX 151499296 151499582 -25474558 + L1PA6 LINE L1 5869 6154 0 347 353 14 14 chrX 151500246 151500385 -25473755 - MIR3 SINE MIR -41 167 29 325 351 53 0 chrX 151500576 151500690 -25473450 + L2 LINE L2 3148 3267 -5 1823 166 3 7 chrX 151500743 151501038 -25473102 + AluJb SINE Alu 1 294 -18 663 332 98 16 chrX 151501185 151501622 -25472518 + L2 LINE L2 2229 2701 -613 691 165 26 0 chrX 151501635 151501750 -25472390 - FLAM_C SINE Alu -20 123 6 3934 248 57 41 chrX 151501765 151503477 -25470663 - L1ME1 LINE L1 -3 6163 4479 2032 141 57 24 chrX 151503477 151503860 -25470280 + L1MA10 LINE L1 5928 6323 -11 3934 248 57 41 chrX 151503860 151505030 -25469110 - L1ME1 LINE L1 -1687 4479 3200 1460 195 40 30 chrX 151505030 151505328 -25468812 + AluJo SINE Alu 1 301 -11 3934 248 57 41 chrX 151505328 151505544 -25468596 - L1ME1 LINE L1 -2966 3200 2989 324 0 0 0 chrX 151506761 151506797 -25467343 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 5928 224 62 7 chrX 151506983 151508223 -25465917 + L1ME1 LINE L1 2323 3695 -2451 357 24 0 0 chrX 151508223 151508265 -25465875 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 5928 224 62 7 chrX 151508265 151508821 -25465319 + L1ME1 LINE L1 3695 4219 -1927 3438 215 50 34 chrX 151508822 151509353 -25464787 + L1ME1 LINE L1 4260 4781 -1385 2910 199 2 25 chrX 151509353 151509920 -25464220 + MLT2B3 LTR ERVL 1 554 0 3438 215 50 34 chrX 151509920 151511251 -25462889 + L1ME1 LINE L1 4781 6161 -5 31 26 0 0 chrX 151511253 151511291 -25462849 + AT_rich Low_complexity Low_complexity 1 38 0 257 304 0 11 chrX 151511397 151511489 -25462651 - MIR SINE MIR -14 248 158 2362 76 13 0 chrX 151511615 151511917 -25462223 + AluSq SINE Alu 1 306 -7 1575 221 118 6 chrX 151512391 151512874 -25461266 + L1MC4 LINE L1 5472 6008 -2034 * 2506 158 39 8 chrX 151512547 151513029 -25461111 + L1MB7 LINE L1 5669 6165 -19 258 196 18 18 chrX 151513041 151513097 -25461043 - MIR SINE MIR -115 147 92 434 280 72 34 chrX 151513218 151513424 -25460716 - MIR SINE MIR -15 247 30 756 164 8 15 chrX 151513588 151513722 -25460418 + MER2 DNA MER2_type 1 133 -212 2010 136 7 0 chrX 151513723 151514017 -25460123 - AluSx SINE Alu -16 296 1 1236 95 42 0 chrX 151514051 151514240 -25459900 - MER30 DNA MER1_type -33 197 1 404 103 13 0 chrX 151514240 151514318 -25459822 + MER2 DNA MER2_type 132 210 -135 1338 180 132 0 chrX 151514332 151514480 -25459660 - AluJo SINE Alu -17 295 168 342 0 0 0 chrX 151514480 151514518 -25459622 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1338 180 132 0 chrX 151514518 151514619 -25459521 - AluJo SINE Alu -144 168 13 217 296 171 0 chrX 151516031 151516119 -25458021 - MIR SINE MIR -72 190 88 195 304 89 45 chrX 151516177 151516289 -25457851 + L3 LINE CR1 1458 1574 -3 5559 32 0 0 chrX 151516498 151517151 -25456989 + L1PA5 LINE L1 5499 6151 -3 2254 82 0 0 chrX 151518729 151519045 -25455095 + AluSg SINE Alu 1 316 0 304 232 158 12 chrX 151519129 151519211 -25454929 - MIR SINE MIR -74 134 41 211 229 57 0 chrX 151520233 151520303 -25453837 - L2 LINE L2 -285 2987 2914 3332 221 45 24 chrX 151521390 151522480 -25451660 - L1ME1 LINE L1 -11 6155 5006 2035 119 81 26 chrX 151522480 151522825 -25451315 - THE1B LTR MaLR 0 364 1 3332 221 45 24 chrX 151522825 151523572 -25450568 - L1ME1 LINE L1 -1160 5006 4276 3917 78 2 0 chrX 151523576 151524099 -25450041 - L1PA13 LINE L1 -3 6160 5637 493 33 0 0 chrX 151524099 151524160 -25449980 - L1P4 LINE L1 -496 5672 5612 * 1461 78 10 0 chrX 151524159 151524352 -25449788 + L1P4 LINE L1 5434 5628 -535 323 191 36 36 chrX 151524339 151524449 -25449691 - L1ME1 LINE L1 -1872 4274 4165 * 2952 226 66 86 chrX 151524469 151525533 -25448607 + L2 LINE L2 2089 3136 -177 1742 187 0 14 chrX 151525533 151525827 -25448313 - AluJo SINE Alu -22 290 1 2952 226 66 86 chrX 151525827 151526002 -25448138 + L2 LINE L2 3136 3313 0 315 0 0 0 chrX 151526428 151526463 -25447677 + (A)n Simple_repeat Simple_repeat 1 35 0 324 0 0 0 chrX 151526649 151526685 -25447455 + (TG)n Simple_repeat Simple_repeat 1 36 0 1898 144 0 4 chrX 151526688 151526965 -25447175 - AluSx SINE Alu -36 276 1 191 259 0 35 chrX 151527001 151527059 -25447081 + L2 LINE L2 3258 3313 0 228 291 141 39 chrX 151527081 151527203 -25446937 + MIR SINE MIR 5 141 -67 385 271 94 65 chrX 151527308 151527478 -25446662 - MIR3 SINE MIR -25 183 9 1362 292 65 4 chrX 151527489 151527952 -25446188 + L1MEc LINE L1 282 772 -5624 504 214 71 0 chrX 151527953 151528065 -25446075 + L1MB8 LINE L1 3736 3855 -2291 1402 144 22 56 chrX 151528065 151528335 -25445805 - THE1B LTR MaLR -103 261 1 2817 206 10 7 chrX 151528337 151528854 -25445286 - MLT2B3 LTR ERVL -44 508 1 542 181 66 18 chrX 151528854 151529020 -25445120 + L1MB8 LINE L1 3853 4026 -2120 361 145 14 0 chrX 151529019 151529088 -25445052 + L1MC1 LINE L1 5195 5264 -882 * 2378 117 23 0 chrX 151529089 151529440 -25444700 + L1PA16 LINE L1 5771 6129 -37 * 6352 128 19 32 chrX 151529435 151529551 -25444589 + L1MC1 LINE L1 5266 5382 -951 2560 68 0 0 chrX 151529551 151529859 -25444281 + AluSg SINE Alu 1 308 -2 6352 128 19 32 chrX 151529859 151530824 -25443316 + L1MC1 LINE L1 5382 6333 0 5445 200 40 16 chrX 151530825 151531893 -25442247 + L1MB8 LINE L1 4021 5062 -1122 1609 148 154 18 chrX 151531893 151532223 -25441917 + THE1C LTR MaLR 1 375 0 9333 121 37 36 chrX 151532226 151533801 -25440339 + THE1C-int LTR MaLR 4 1580 0 1545 160 142 12 chrX 151533801 151534133 -25440007 + THE1C LTR MaLR 1 375 0 5445 200 40 16 chrX 151534133 151534810 -25439330 + L1MB8 LINE L1 5062 5802 -382 1407 159 9 53 chrX 151534818 151535138 -25439002 + L1MB8 LINE L1 5873 6178 0 2377 241 63 54 chrX 151535138 151536231 -25437909 + L1ME3A LINE L1 762 1864 -4532 1721 265 115 34 chrX 151536245 151537304 -25436836 + L1ME3A LINE L1 3013 4157 -2058 591 258 180 16 chrX 151537388 151537644 -25436496 + L1ME3A LINE L1 5723 6020 -219 937 272 106 34 chrX 151537935 151538734 -25435406 + L1ME LINE L1 4802 5656 -506 1216 181 152 1 chrX 151538741 151539134 -25435006 + Charlie1b DNA MER1_type 21 473 -50 289 203 0 0 chrX 151539153 151539212 -25434928 - L2 LINE L2 -4 3268 3210 231 284 0 0 chrX 151540089 151540163 -25433977 + (TA)n Simple_repeat Simple_repeat 1 74 0 304 254 16 56 chrX 151540197 151540323 -25433817 - MIR SINE MIR -111 151 31 488 265 61 0 chrX 151540553 151540685 -25433455 + MIR3 SINE MIR 63 202 -6 377 383 23 1 chrX 151540979 151541152 -25432988 + MIR3 SINE MIR 1 175 -62 195 247 0 0 chrX 151541963 151542036 -25432104 + (CAGG)n Simple_repeat Simple_repeat 4 76 0 500 273 55 0 chrX 151542951 151543079 -25431061 - L2 LINE L2 0 3313 3179 462 277 184 25 chrX 151543533 151543811 -25430329 + L2 LINE L2 2951 3272 0 190 304 14 14 chrX 151543893 151543962 -25430178 + L2 LINE L2 3193 3261 -52 1145 124 9 57 chrX 151543966 151544176 -25429964 - MLT1B LTR MaLR -188 202 3 2170 105 0 3 chrX 151544177 151544512 -25429628 - AluSx SINE Alu 0 334 1 1068 174 160 14 chrX 151545538 151545782 -25428358 + MER5C DNA MER1_type 1 293 -31 2090 69 14 0 chrX 151545782 151546058 -25428082 - L1PA13 LINE L1 -6 6157 5878 1068 174 160 14 chrX 151546058 151546095 -25428045 + MER5C DNA MER1_type 293 323 -1 280 273 34 11 chrX 151546201 151546289 -25427851 - L2 LINE L2 -7 3306 3217 1875 78 0 34 chrX 151546355 151546608 -25427532 - L1PB1 LINE L1 -278 5873 5628 1984 96 0 0 chrX 151546608 151546878 -25427262 + L1PB1 LINE L1 5881 6151 0 325 219 52 0 chrX 151546878 151546974 -25427166 + L1MCa LINE L1 1024 1124 -5302 3708 169 36 52 chrX 151546978 151547117 -25427023 + L1MB7 LINE L1 4373 4513 -1671 1576 170 57 3 chrX 151547117 151547400 -25426740 - AluJo SINE Alu -14 298 1 3708 169 36 52 chrX 151547400 151547411 -25426729 + L1MB7 LINE L1 4513 4523 -1661 2705 14 0 0 chrX 151547411 151547708 -25426432 - AluY SINE Alu -14 297 1 2319 67 0 27 chrX 151547712 151548011 -25426129 - AluY SINE Alu -20 291 1 3708 169 36 52 chrX 151548011 151549470 -25424670 + L1MB7 LINE L1 4526 5956 -228 4033 197 9 1 chrX 151549658 151550469 -25423671 - L1 LINE L1 -3094 3052 2236 1847 137 27 0 chrX 151550467 151550767 -25423373 - L1MA4A LINE L1 -312 5991 5684 * 23 33 0 0 chrX 151550799 151550829 -25423311 + AT_rich Low_complexity Low_complexity 1 30 0 514 180 126 78 chrX 151550977 151551183 -25422957 + L2 LINE L2 3097 3312 -1 11507 185 15 6 chrX 151551221 151552815 -25421325 + L1PB1 LINE L1 2798 4431 -1720 450 0 0 0 chrX 151552815 151552865 -25421275 + (TAA)n Simple_repeat Simple_repeat 2 51 0 11507 185 15 6 chrX 151552865 151554238 -25419902 + L1PB1 LINE L1 4431 5791 -360 371 148 57 0 chrX 151554239 151554474 -25419666 + (TA)n Simple_repeat Simple_repeat 1 248 0 453 56 31 62 chrX 151554476 151554636 -25419504 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 37 0 0 0 chrX 151554646 151554683 -25419457 + AT_rich Low_complexity Low_complexity 1 37 0 408 70 96 17 chrX 151554684 151555200 -25418940 + (TA)n Simple_repeat Simple_repeat 1 556 0 2402 125 0 3 chrX 151555200 151555567 -25418573 + L1PB1 LINE L1 5783 6148 -3 879 171 7 0 chrX 151555598 151555750 -25418390 - MLT1D LTR MaLR 0 505 353 5784 164 16 16 chrX 151555753 151557781 -25416359 - L1PB4 LINE L1 0 6156 4133 1235 221 30 52 chrX 151557791 151558153 -25415987 - MLT1D LTR MaLR -149 356 3 7103 233 45 19 chrX 151558161 151560480 -25413660 + L1ME3A LINE L1 2360 4737 -1409 410 281 0 23 chrX 151560475 151560603 -25413537 + L1MD2 LINE L1 2692 2816 -3330 * 8308 87 6 1 chrX 151560607 151561703 -25412437 - THE1-int LTR MaLR -474 1106 6 3413 64 2 26 chrX 151561707 151561747 -25412393 - MLT2A1 LTR ERVL 0 444 405 531 0 0 0 chrX 151561747 151561806 -25412334 + (TA)n Simple_repeat Simple_repeat 2 60 0 3413 64 2 26 chrX 151561806 151561936 -25412204 - MLT2A1 LTR ERVL -39 405 273 2714 17 0 0 chrX 151561936 151562236 -25411904 + AluYa5 SINE Alu 1 300 -11 3413 64 2 26 chrX 151562236 151562519 -25411621 - MLT2A1 LTR ERVL -171 273 1 2783 236 24 39 chrX 151562520 151563165 -25410975 + L1MD2 LINE L1 2813 3466 -2680 2399 109 16 25 chrX 151563165 151563532 -25410608 - THE1B LTR MaLR 0 364 1 2783 236 24 39 chrX 151563532 151563559 -25410581 + L1MD2 LINE L1 3466 3492 -2654 2067 146 0 0 chrX 151563559 151563860 -25410280 - AluJb SINE Alu -11 301 1 2783 236 24 39 chrX 151563860 151564192 -25409948 + L1MD2 LINE L1 3492 3803 -2343 657 316 78 58 chrX 151564200 151564279 -25409861 - L2 LINE L2 -1222 2092 2016 2337 169 36 5 chrX 151564279 151564698 -25409442 - MSTB1 LTR MaLR 0 432 1 657 316 78 58 chrX 151564698 151565209 -25408931 - L2 LINE L2 -1298 2016 1490 298 290 140 0 chrX 151565203 151565310 -25408830 + MIR SINE MIR 43 164 -98 * 682 281 24 0 chrX 151565432 151565596 -25408544 + MIR SINE MIR 82 249 -13 2236 104 3 0 chrX 151565657 151565945 -25408195 + AluSp SINE Alu 7 295 -18 371 271 47 0 chrX 151566023 151566130 -25408010 - MIR SINE MIR -65 143 32 4682 191 57 16 chrX 151566685 151567989 -25406151 + L1MD2 LINE L1 4817 6184 -175 207 0 0 0 chrX 151567989 151568012 -25406128 + (CA)n Simple_repeat Simple_repeat 2 24 0 4682 191 57 16 chrX 151568012 151568178 -25405962 + L1MD2 LINE L1 6184 6342 -17 778 261 54 59 chrX 151568223 151568654 -25405486 + L1ME3A LINE L1 5026 5463 -707 1907 135 0 14 chrX 151568654 151568943 -25405197 - AluJb SINE Alu -26 286 2 778 261 54 59 chrX 151568943 151569135 -25405005 + L1ME3A LINE L1 5463 5655 -515 469 259 153 40 chrX 151569140 151569325 -25404815 + MER112 DNA MER1_type 6 223 -37 913 202 6 6 chrX 151569325 151569503 -25404637 + MER5B DNA MER1_type 1 178 0 469 259 153 40 chrX 151569503 151569545 -25404595 + MER112 DNA MER1_type 223 259 -1 984 147 41 0 chrX 151569545 151569742 -25404398 + L1MD3 LINE L1 7791 7995 0 746 264 51 17 chrX 151569753 151570049 -25404091 + L1ME3A LINE L1 5647 5952 -218 280 286 28 65 chrX 151569802 151570092 -25404048 + L1MA1 LINE L1 5704 5982 -320 * 825 156 0 0 chrX 151570309 151570444 -25403696 + L1MC1 LINE L1 6180 6314 -19 2411 93 0 3 chrX 151570720 151571030 -25403110 - AluSc SINE Alu 0 309 1 299 292 116 43 chrX 151571955 151572352 -25401788 - L2 LINE L2 -756 2558 2133 1825 141 2 108 chrX 151573307 151573741 -25400399 - MLT1B LTR MaLR -2 388 1 187 255 0 0 chrX 151573831 151573878 -25400262 - MIR3 SINE MIR -13 195 149 250 284 78 17 chrX 151574588 151574704 -25399436 + MIR3 SINE MIR 82 204 -4 2102 130 18 3 chrX 151574986 151575324 -25398816 + MER2 DNA MER2_type 2 344 0 1991 265 83 7 chrX 151575550 151576237 -25397903 - L2 LINE L2 -571 2743 2005 482 231 33 16 chrX 151576463 151576584 -25397556 + MIR SINE MIR 22 144 -118 389 247 205 68 chrX 151576943 151577485 -25396655 + L2 LINE L2 1923 2538 -776 336 174 183 0 chrX 151577653 151577735 -25396405 + MER5A DNA MER1_type 4 104 -85 1364 193 15 52 chrX 151578166 151578492 -25395648 + L1MA9 LINE L1 5961 6274 -38 1234 157 19 11 chrX 151578550 151578865 -25395275 - MLT1F LTR MaLR -3 539 168 2504 108 17 20 chrX 151578898 151579305 -25394835 + L1MA8 LINE L1 5886 6291 0 742 143 0 14 chrX 151579729 151579869 -25394271 + (TCC)n Simple_repeat Simple_repeat 2 139 0 2169 131 0 6 chrX 151579870 151580184 -25393956 - AluJb SINE Alu 0 312 1 190 341 12 24 chrX 151580312 151580397 -25393743 + L2 LINE L2 3189 3272 0 219 208 42 0 chrX 151581485 151581533 -25392607 + (CATG)n Simple_repeat Simple_repeat 2 51 0 1763 130 0 35 chrX 151581592 151581876 -25392264 - AluJb SINE Alu -7 305 32 212 125 21 21 chrX 151582054 151582102 -25392038 + T-rich Low_complexity Low_complexity 3 50 0 230 258 62 31 chrX 151584159 151584256 -25389884 - L3 LINE CR1 -136 1441 1342 191 189 19 0 chrX 151584401 151584454 -25389686 + T-rich Low_complexity Low_complexity 5 58 0 252 284 49 39 chrX 151584903 151585005 -25389135 + MIR SINE MIR 108 210 -52 199 291 136 0 chrX 151585854 151585957 -25388183 + L2 LINE L2 3141 3257 -15 429 277 84 13 chrX 151586823 151586978 -25387162 + MIR3 SINE MIR 21 186 -22 446 238 66 40 chrX 151588070 151588221 -25385919 - MIR3 SINE MIR -32 176 22 5536 145 59 9 chrX 151588405 151589358 -25384782 + L1MC2 LINE L1 5343 6342 -2 29 28 0 0 chrX 151589560 151589596 -25384544 + AT_rich Low_complexity Low_complexity 1 36 0 185 260 40 0 chrX 151590259 151590309 -25383831 - L2 LINE L2 0 3313 3262 361 245 77 42 chrX 151590508 151590651 -25383489 - MLT1D LTR MaLR -187 318 171 835 234 121 103 chrX 151590651 151590706 -25383434 - MLT1D LTR MaLR 0 505 452 855 78 94 8 chrX 151590706 151590834 -25383306 - MER85 DNA T2_type 0 139 1 835 234 121 103 chrX 151590834 151591274 -25382866 - MLT1D LTR MaLR -53 452 1 481 249 11 85 chrX 151591288 151591465 -25382675 - MLT1D LTR MaLR -341 164 1 2465 139 8 10 chrX 151591477 151591866 -25382274 + MLT1B LTR MaLR 1 388 -2 323 89 44 0 chrX 151591906 151591951 -25382189 - MLT1E1 LTR MaLR -607 47 1 655 238 240 15 chrX 151592858 151593437 -25380703 - L2 LINE L2 -56 3257 2555 306 234 65 65 chrX 151594116 151594163 -25379977 - MER5A DNA MER1_type 0 189 143 2080 93 68 0 chrX 151594163 151594441 -25379699 - AluSc SINE Alu -12 297 1 306 234 65 65 chrX 151594441 151594565 -25379575 - MER5A DNA MER1_type -46 143 1 2363 102 0 0 chrX 151596306 151596619 -25377521 + AluSq SINE Alu 1 313 0 2256 98 6 16 chrX 151597817 151598133 -25376007 + AluSq SINE Alu 1 313 0 408 238 25 16 chrX 151598288 151598410 -25375730 + L1ME4a LINE L1 5999 6121 0 21 57 0 0 chrX 151598628 151598663 -25375477 + AT_rich Low_complexity Low_complexity 1 35 0 2276 74 0 7 chrX 151599778 151600088 -25374052 + AluY SINE Alu 1 308 0 2407 70 7 3 chrX 151600123 151600421 -25373719 + AluSq SINE Alu 1 299 -14 773 199 28 42 chrX 151601848 151602016 -25372124 + L1M4 LINE L1 3600 3769 -2377 1997 133 28 0 chrX 151602016 151602302 -25371838 + AluSx SINE Alu 1 294 -18 773 199 28 42 chrX 151602302 151602391 -25371749 + L1M4 LINE L1 3769 3944 -2202 4597 180 47 25 chrX 151602397 151602457 -25371683 + L1MA9 LINE L1 4355 4412 -1900 1561 173 48 28 chrX 151602457 151602746 -25371394 + AluJb SINE Alu 1 295 -17 4597 180 47 25 chrX 151602746 151604581 -25369559 + L1MA9 LINE L1 4412 6282 -30 21 0 0 0 chrX 151604619 151604640 -25369500 + AT_rich Low_complexity Low_complexity 1 21 0 233 200 0 0 chrX 151604707 151604757 -25369383 - Charlie7 DNA MER1_type -2519 93 44 2722 114 10 2 chrX 151605908 151606311 -25367829 + L1PA15 LINE L1 5760 6165 0 202 292 94 73 chrX 151606360 151606593 -25367547 + MIR SINE MIR 20 257 -5 247 252 134 25 chrX 151606737 151606856 -25367284 - L2 LINE L2 -1 3312 3181 207 69 0 0 chrX 151607365 151607394 -25366746 + (CGCGG)n Simple_repeat Simple_repeat 4 32 0 779 173 0 0 chrX 151608312 151608439 -25365701 + FLAM_C SINE Alu 1 127 -6 23 0 0 0 chrX 151608442 151608465 -25365675 + AT_rich Low_complexity Low_complexity 1 23 0 1328 146 103 73 chrX 151608553 151608882 -25365258 + MER58B DNA MER1_type 3 341 0 337 219 27 0 chrX 151609194 151609267 -25364873 + L2 LINE L2 3239 3313 0 1087 101 0 34 chrX 151609325 151609474 -25364666 + AluSg/x SINE Alu 134 277 -32 2505 161 41 35 chrX 151609511 151609970 -25364170 - MLT1C LTR MaLR -5 462 1 396 239 103 0 chrX 151609971 151610088 -25364052 - MIR3 SINE MIR -51 157 29 2444 32 0 14 chrX 151610239 151610571 -25363569 - AluY SINE Alu 0 328 1 274 356 83 8 chrX 151611030 151611162 -25362978 - MIR3 SINE MIR -50 158 17 207 222 0 0 chrX 151613223 151613304 -25360836 + (TG)n Simple_repeat Simple_repeat 2 82 0 1034 108 24 6 chrX 151613339 151613505 -25360635 - MER67C LTR ERV1 -4 706 538 9470 119 11 2 chrX 151613505 151614861 -25359279 - Tigger1 DNA MER2_type -1 2417 1050 900 251 138 7 chrX 151614839 151615130 -25359010 - MER67C LTR ERV1 -381 329 1 * 234 62 0 0 chrX 151615155 151615187 -25358953 + (TG)n Simple_repeat Simple_repeat 2 33 0 233 248 34 94 chrX 151616069 151616186 -25357954 - L3 LINE CR1 -52 1525 1416 219 353 149 5 chrX 151616226 151616447 -25357693 - L3 LINE CR1 -529 1048 796 255 327 9 35 chrX 151616513 151616626 -25357514 + MIR SINE MIR 31 140 -68 256 296 0 0 chrX 151617316 151617387 -25356753 - MIR3 SINE MIR -14 194 124 560 152 0 9 chrX 151617632 151617737 -25356403 + GA-rich Low_complexity Low_complexity 4 107 0 343 137 0 49 chrX 151618463 151618565 -25355575 + (GGAA)n Simple_repeat Simple_repeat 3 99 0 456 258 52 80 chrX 151618696 151618727 -25355413 - L2 LINE L2 -19 3294 3264 207 0 0 0 chrX 151618727 151618750 -25355390 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 940 243 66 0 chrX 151618754 151618997 -25355143 + MIR SINE MIR 4 262 0 456 258 52 80 chrX 151618997 151619247 -25354893 - L2 LINE L2 -52 3261 3016 792 242 58 31 chrX 151620111 151620371 -25353769 - L2 LINE L2 -2 3311 3045 1626 204 19 11 chrX 151620582 151620944 -25353196 - MLT1A1 LTR MaLR 0 365 1 3691 201 30 42 chrX 151621080 151621582 -25352558 - L1ME1 LINE L1 0 6166 5659 232 26 26 26 chrX 151621582 151621620 -25352520 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 3691 201 30 42 chrX 151621620 151621912 -25352228 - L1ME1 LINE L1 -507 5659 5382 2039 154 0 3 chrX 151621912 151622224 -25351916 - AluJb SINE Alu -1 311 1 3691 201 30 42 chrX 151622224 151622324 -25351816 - L1ME1 LINE L1 -784 5382 5282 1865 192 59 71 chrX 151622324 151622714 -25351426 - MLT1D LTR MaLR -5 500 116 2294 80 33 0 chrX 151622714 151623014 -25351126 - AluY SINE Alu -1 310 1 1865 192 59 71 chrX 151623014 151623129 -25351011 - MLT1D LTR MaLR -389 116 1 2186 186 84 43 chrX 151623129 151623711 -25350429 - L1ME1 LINE L1 -856 5290 4685 2866 253 67 25 chrX 151623723 151624729 -25349411 - L1ME1 LINE L1 -1778 4368 3321 699 255 27 5 chrX 151624736 151624924 -25349216 - L1ME LINE L1 -298 5823 5632 1755 265 59 47 chrX 151624935 151625512 -25348628 - MLT1E LTR MaLR -7 586 3 24 53 0 0 chrX 151625631 151625669 -25348471 + AT_rich Low_complexity Low_complexity 1 38 0 377 288 68 25 chrX 151625834 151626074 -25348066 - L1ME1 LINE L1 -208 5962 5706 1469 185 0 93 chrX 151626074 151626398 -25347742 - AluJo SINE Alu -18 294 1 377 288 68 25 chrX 151626398 151626424 -25347716 - L1ME1 LINE L1 -464 5706 5683 2096 154 75 3 chrX 151626487 151626845 -25347295 + MLT1B LTR MaLR 2 385 -5 363 262 79 75 chrX 151626855 151627103 -25347037 - L1P5 LINE L1 -710 5446 5185 21 57 0 0 chrX 151627145 151627180 -25346960 + AT_rich Low_complexity Low_complexity 1 35 0 738 226 128 21 chrX 151627287 151627521 -25346619 - MIR SINE MIR -2 260 2 24 106 0 0 chrX 151627588 151627682 -25346458 + AT_rich Low_complexity Low_complexity 1 94 0 272 312 5 84 chrX 151627783 151627998 -25346142 - L1ME1 LINE L1 -968 5178 4981 * 3839 191 79 48 chrX 151627977 151628511 -25345629 - L1MD2 LINE L1 -16 6343 5827 2583 158 41 19 chrX 151628511 151628930 -25345210 - MSTC LTR MaLR 0 428 1 3839 191 79 48 chrX 151628930 151629733 -25344407 - L1MD2 LINE L1 -532 5827 4970 727 296 61 27 chrX 151629841 151630169 -25343971 - L1MDa LINE L1 -6142 398 60 283 277 0 0 chrX 151630200 151630283 -25343857 - L1MD2 LINE L1 -1128 5018 4936 321 215 41 58 chrX 151630389 151630561 -25343579 + (CATTA)n Simple_repeat Simple_repeat 5 173 0 506 102 45 45 chrX 151630567 151630744 -25343396 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 221 65 138 0 chrX 151630710 151630848 -25343292 + (TA)n Simple_repeat Simple_repeat 1 157 0 * 509 264 42 40 chrX 151630933 151631276 -25342864 - L1MD2 LINE L1 -1406 4740 4394 309 320 56 56 chrX 151631285 151631482 -25342658 + L1ME4a LINE L1 4243 4439 -1707 238 308 117 33 chrX 151631527 151631800 -25342340 + L1ME4a LINE L1 5255 5550 -2258 273 250 43 11 chrX 151631888 151631980 -25342160 + MIR SINE MIR 117 211 -51 296 257 194 28 chrX 151632060 151632204 -25341936 - MER91A DNA MER1_type 0 196 29 416 302 75 26 chrX 151632282 151632547 -25341593 + L1ME4a LINE L1 5687 5964 -157 231 152 22 0 chrX 151632549 151632595 -25341545 + (TA)n Simple_repeat Simple_repeat 2 48 0 977 54 14 14 chrX 151632816 151632963 -25341177 + (TTTC)n Simple_repeat Simple_repeat 2 148 0 948 134 7 0 chrX 151632965 151633107 -25341033 - FRAM SINE Alu -34 142 1 309 200 71 0 chrX 151633702 151633787 -25340353 + MIR SINE MIR 107 197 -65 422 270 57 30 chrX 151634035 151634227 -25339913 + MIR SINE MIR 1 190 -58 9469 55 0 1 chrX 151634418 151635594 -25338546 - L1P LINE L1 -854 5292 4118 2980 70 0 20 chrX 151635587 151635988 -25338152 + L1P LINE L1 1986 2378 -3768 * 297 224 96 45 chrX 151636228 151636384 -25337756 + AluJb SINE Alu 139 302 0 262 147 32 137 chrX 151638418 151638513 -25335627 + LTR33 LTR ERVL 39 123 -398 335 171 52 52 chrX 151641574 151641675 -25332465 + AluSp SINE Alu 122 197 -106 21 36 0 0 chrX 151642389 151642417 -25331723 + AT_rich Low_complexity Low_complexity 1 28 0 315 286 110 0 chrX 151643182 151643273 -25330867 + FLAM_A SINE Alu 1 101 -32 21 0 0 0 chrX 151643548 151643569 -25330571 + AT_rich Low_complexity Low_complexity 1 21 0 203 243 0 0 chrX 151643886 151643923 -25330217 + (CATG)n Simple_repeat Simple_repeat 3 39 0 724 297 69 8 chrX 151644271 151644608 -25329532 + L1M4c LINE L1 1103 1465 -4919 255 93 0 0 chrX 151644608 151644651 -25329489 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 724 297 69 8 chrX 151644651 151644677 -25329463 + L1M4c LINE L1 1465 1488 -4896 347 266 78 39 chrX 151645713 151645841 -25328299 - FLAM_C SINE Alu 0 133 1 337 206 38 150 chrX 151646879 151647039 -25327101 + MER20 DNA MER1_type 43 184 -35 429 274 48 55 chrX 151647861 151648007 -25326133 + MER58A DNA MER1_type 1 145 0 23 0 0 0 chrX 151648209 151648232 -25325908 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chrX 151648415 151648444 -25325696 + (A)n Simple_repeat Simple_repeat 1 29 0 421 129 86 121 chrX 151648622 151648738 -25325402 + FLAM_C SINE Alu 22 133 -10 261 0 0 0 chrX 151649204 151649233 -25324907 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 394 213 79 55 chrX 151649281 151649408 -25324732 + FLAM_C SINE Alu 1 130 -3 471 141 0 0 chrX 151649447 151649525 -25324615 + (GGA)n Simple_repeat Simple_repeat 2 79 0 303 233 20 140 chrX 151650160 151650310 -25323830 + FLAM_C SINE Alu 2 133 0 364 229 107 49 chrX 151654087 151654209 -25319931 + FLAM_C SINE Alu 3 131 -2 253 327 118 0 chrX 151655006 151655116 -25319024 + FLAM_A SINE Alu 6 128 -5 25 65 0 0 chrX 151655522 151655568 -25318572 + AT_rich Low_complexity Low_complexity 1 46 0 620 216 137 5 chrX 151656058 151656262 -25317878 + MER45R DNA AcHobo 1351 1581 0 352 189 69 10 chrX 151656563 151656694 -25317446 + AluSp SINE Alu 129 197 -106 186 308 77 41 chrX 151657044 151657213 -25316927 - MIR SINE MIR -31 231 57 258 279 44 0 chrX 151658821 151658889 -25315251 + FRAM/FAM SINE Alu 1 71 -95 504 0 0 0 chrX 151659011 151659067 -25315073 + (CA)n Simple_repeat Simple_repeat 2 57 0 273 196 20 0 chrX 151659204 151659255 -25314885 - FRAM/FAM SINE Alu -107 59 8 794 288 26 9 chrX 151709967 151710200 -25263940 - MIR SINE MIR -22 240 4 288 355 64 30 chrX 151710712 151710915 -25263225 + L2 LINE L2 3043 3252 -20 309 345 45 18 chrX 151711100 151711210 -25262930 + L2 LINE L2 3116 3228 -44 287 209 0 22 chrX 151711238 151711329 -25262811 + GA-rich Low_complexity Low_complexity 3 91 0 246 327 131 30 chrX 151712270 151712438 -25261702 + MIR SINE MIR 24 208 -54 21 0 0 0 chrX 151712463 151712484 -25261656 + AT_rich Low_complexity Low_complexity 1 21 0 257 216 59 59 chrX 151713029 151713131 -25261009 + L2 LINE L2 3212 3313 0 3449 212 34 31 chrX 151713152 151714096 -25260044 - L1M4 LINE L1 -1463 4683 3737 1106 291 98 36 chrX 151714100 151714457 -25259683 - L1MEd LINE L1 -4591 1538 1205 621 40 0 0 chrX 151714457 151714533 -25259607 + (TC)n Simple_repeat Simple_repeat 2 77 0 1106 291 98 36 chrX 151714533 151715379 -25258761 - L1MEd LINE L1 -4924 1205 273 922 248 120 112 chrX 151715557 151716308 -25257832 - L1MC4 LINE L1 -1 8041 7285 259 278 37 46 chrX 151716429 151716537 -25257603 - L2 LINE L2 -43 3229 3123 369 338 40 7 chrX 151716644 151716792 -25257348 - L2 LINE L2 -9 3263 3111 293 351 32 52 chrX 151717090 151717338 -25256802 - L3 LINE CR1 -435 1142 900 188 35 35 0 chrX 151718742 151718771 -25255369 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 265 273 0 15 chrX 151719138 151719204 -25254936 - MIR SINE MIR -124 84 20 198 0 0 0 chrX 151719285 151719307 -25254833 + (A)n Simple_repeat Simple_repeat 1 22 0 231 256 70 70 chrX 151719817 151719946 -25254194 - MER5B DNA MER1_type -49 129 1 332 271 0 37 chrX 151720728 151720835 -25253305 - MIR SINE MIR -141 121 19 1003 241 32 32 chrX 151721358 151721611 -25252529 - MIR SINE MIR -1 261 9 182 156 22 0 chrX 151721849 151721894 -25252246 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 454 323 55 6 chrX 151721950 151722114 -25252026 + MIR SINE MIR 20 191 -71 296 308 33 42 chrX 151722484 151722604 -25251536 - MIR SINE MIR -72 136 18 463 305 24 12 chrX 151723338 151723502 -25250638 - MIR3 SINE MIR -28 180 15 2210 102 3 16 chrX 151723534 151723839 -25250301 + AluSq SINE Alu 1 301 -12 1347 196 213 27 chrX 151724216 151724630 -25249510 + MLT1D LTR MaLR 13 503 -2 1283 207 98 50 chrX 151726412 151726808 -25247332 + MER96B DNA MER1_type 3 417 0 207 88 0 0 chrX 151726900 151726934 -25247206 + (TTAGG)n Simple_repeat Simple_repeat 3 36 0 8282 19 0 0 chrX 151727566 151729073 -25245067 - L1PA2 LINE L1 0 6155 4650 3629 81 15 8 chrX 151729173 151729654 -25244486 + L1PA8 LINE L1 5686 6169 -3 1052 137 49 59 chrX 151729654 151729858 -25244282 - MER44D DNA MER2_type -137 472 1 2334 202 36 27 chrX 151729866 151730133 -25244007 - L1M4c LINE L1 -4813 1833 1570 1315 173 45 130 chrX 151730133 151730532 -25243608 + MLT1A1 LTR MaLR 1 365 0 2334 202 36 27 chrX 151730532 151730974 -25243166 - L1M4c LINE L1 -5076 1570 1111 588 165 15 68 chrX 151731078 151731089 -25243051 - FRAM SINE Alu -136 40 30 2412 75 3 3 chrX 151731089 151731396 -25242744 - AluSc SINE Alu -2 307 1 588 165 15 68 chrX 151731396 151731418 -25242722 - FRAM SINE Alu -146 30 102 189 107 0 0 chrX 151731418 151731446 -25242694 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 588 165 15 68 chrX 151731446 151731544 -25242596 - FRAM SINE Alu -73 103 1 1915 124 11 11 chrX 151731547 151731875 -25242265 - AluSx SINE Alu 0 328 1 2688 225 22 85 chrX 151731875 151732847 -25241293 - L1M4 LINE L1 -3058 3088 2179 943 140 40 0 chrX 151732858 151733008 -25241132 - L1MA3 LINE L1 0 6305 6150 2328 184 2 0 chrX 151733008 151733437 -25240703 + L1 LINE L1 4864 5293 -853 5584 124 15 25 chrX 151733441 151734358 -25239782 - L1MA3 LINE L1 -144 6161 5254 260 296 133 40 chrX 151734465 151734863 -25239277 - L1M4 LINE L1 -1088 5058 4624 2240 194 18 11 chrX 151734868 151735326 -25238814 - L1M4 LINE L1 -2139 4007 3547 * 7005 172 35 43 chrX 151735325 151737007 -25237133 + L1PA16 LINE L1 3663 5332 -834 2357 97 0 0 chrX 151737007 151737305 -25236835 + AluSx SINE Alu 1 298 -14 7005 172 35 43 chrX 151737305 151738131 -25236009 + L1PA16 LINE L1 5332 6163 -3 1751 207 39 5 chrX 151738132 151738542 -25235598 - L1M4 LINE L1 -2592 3554 3131 * 43365 41 23 1 chrX 151738511 151744537 -25229603 - L1PA5 LINE L1 0 6154 1 184 333 49 25 chrX 151744540 151744621 -25229519 + L2 LINE L2 2942 3024 -248 467 211 0 0 chrX 151744697 151744772 -25229368 + Tigger5 DNA MER2_type 4 78 -2245 384 211 40 0 chrX 151744772 151744848 -25229292 - Tigger5 DNA MER2_type -3 2320 2242 344 167 0 0 chrX 151744844 151744898 -25229242 + Tigger5 DNA MER2_type 2264 2317 -6 * 648 267 43 11 chrX 151744910 151745347 -25228793 + HAL1 LINE L1 84 657 -1850 2451 146 86 4 chrX 151745535 151745988 -25228152 - L1MB2 LINE L1 -2 6169 5680 208 275 55 115 chrX 151746134 151746316 -25227824 + MIR SINE MIR 35 205 -57 184 167 42 0 chrX 151747199 151747247 -25226893 + MIR SINE MIR 86 135 -73 189 0 0 0 chrX 151747780 151747801 -25226339 + (T)n Simple_repeat Simple_repeat 1 21 0 342 0 0 0 chrX 151748137 151748175 -25225965 + (TG)n Simple_repeat Simple_repeat 2 39 0 205 246 46 0 chrX 151748836 151748901 -25225239 + CT-rich Low_complexity Low_complexity 3 70 0 348 246 97 30 chrX 151749333 151749467 -25224673 - L1ME4a LINE L1 0 6121 5979 2066 106 23 27 chrX 151749518 151749819 -25224321 - AluSx SINE Alu -3 309 10 192 327 238 0 chrX 151749861 151749962 -25224178 + L2 LINE L2 3147 3271 -1 716 197 7 14 chrX 151750226 151750373 -25223767 + L2 LINE L2 3168 3313 0 197 318 65 47 chrX 151750536 151750643 -25223497 - MIR SINE MIR -83 125 17 371 80 0 0 chrX 151751354 151751404 -25222736 - L1PA12 LINE L1 0 6168 6119 412 323 6 66 chrX 151751762 151752095 -25222045 - L2 LINE L2 -2 3270 2878 228 300 124 38 chrX 151752135 151752345 -25221795 - L2 LINE L2 -727 2587 2360 262 286 39 0 chrX 151752433 151752510 -25221630 - L2 LINE L2 -558 2756 2677 827 304 173 24 chrX 151752537 151753115 -25221025 - L2 LINE L2 -826 2488 1825 309 324 23 12 chrX 151753115 151753288 -25220852 + L1M4 LINE L1 4341 4515 -1631 1944 278 62 24 chrX 151753300 151753804 -25220336 + L1ME2 LINE L1 4373 4856 -1306 2186 117 3 0 chrX 151753804 151754103 -25220037 + AluSp SINE Alu 1 300 -13 1944 278 62 24 chrX 151754103 151755137 -25219003 + L1ME2 LINE L1 4856 5957 -205 379 134 24 0 chrX 151755137 151755219 -25218921 + (TA)n Simple_repeat Simple_repeat 1 84 0 2415 83 3 0 chrX 151755382 151755683 -25218457 + AluSp SINE Alu 1 302 -11 241 276 14 34 chrX 151755688 151755816 -25218324 + L1MC5 LINE L1 7845 8037 -5 183 246 46 15 chrX 151755902 151755967 -25218173 - L2 LINE L2 -553 2761 2695 304 395 0 0 chrX 151756804 151756923 -25217217 - MIR SINE MIR -55 153 35 21 36 0 0 chrX 151757049 151757077 -25217063 + AT_rich Low_complexity Low_complexity 1 28 0 319 341 60 28 chrX 151757564 151757746 -25216394 + L2 LINE L2 3083 3270 -2 227 365 32 8 chrX 151758708 151758834 -25215306 - L2 LINE L2 -234 3038 2910 506 219 62 16 chrX 151758910 151759038 -25215102 + L2 LINE L2 3180 3313 0 214 184 20 0 chrX 151760754 151760803 -25213337 + (TGG)n Simple_repeat Simple_repeat 3 52 0 685 285 12 6 chrX 151760971 151761136 -25213004 + MIR3 SINE MIR 16 181 -27 1052 115 85 0 chrX 151761553 151761718 -25212422 - AluSg/x SINE Alu 0 312 134 311 232 24 0 chrX 151761990 151762086 -25212054 - MIR3 SINE MIR -6 202 103 261 326 170 35 chrX 151762447 151762677 -25211463 - L2 LINE L2 0 3272 3012 699 241 79 49 chrX 151762717 151762920 -25211220 - MIR SINE MIR -52 210 2 202 288 38 50 chrX 151762924 151763004 -25211136 - L2 LINE L2 -310 2962 2884 661 323 154 17 chrX 151763120 151763631 -25210509 - L2 LINE L2 -610 2704 2077 210 188 31 78 chrX 151765435 151765499 -25208641 + L2 LINE L2 3204 3264 -8 952 249 15 0 chrX 151765943 151766148 -25207992 - MIR SINE MIR -21 241 34 203 300 80 60 chrX 151766420 151766520 -25207620 + L2 LINE L2 3142 3243 -29 247 308 88 48 chrX 151766717 151766967 -25207173 - L3 LINE CR1 -5 1572 1313 481 248 61 3 chrX 151767642 151767817 -25206323 + MIR3 SINE MIR 1 184 -62 2192 139 128 8 chrX 151767915 151768297 -25205843 + MSTA LTR MaLR 1 428 0 10700 126 6 38 chrX 151768299 151769929 -25204211 + MSTA-int LTR MaLR 3 1580 0 2007 150 134 24 chrX 151769931 151770312 -25203828 + MSTA LTR MaLR 3 425 -3 194 88 0 29 chrX 151771259 151771293 -25202847 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 271 224 105 66 chrX 151772050 151772126 -25202014 - L2 LINE L2 -25 3247 3169 2186 161 45 0 chrX 151772127 151772506 -25201634 + MER57A LTR ERV1 8 403 0 296 323 24 39 chrX 151772524 151772651 -25201489 - MIR3 SINE MIR -49 159 35 1668 170 3 17 chrX 151773900 151774188 -25199952 - AluJo SINE Alu -22 290 7 612 271 48 0 chrX 151774538 151774704 -25199436 + MIR3 SINE MIR 20 193 -15 707 343 64 3 chrX 151774862 151775206 -25198934 - LTR16B LTR ERVL 0 464 100 360 367 39 35 chrX 151775539 151775768 -25198372 - L3 LINE CR1 -5 1572 1343 2870 134 11 29 chrX 151776042 151776496 -25197644 + L1PA16 LINE L1 5711 6156 -10 932 207 95 18 chrX 151777692 151777914 -25196226 + MIR SINE MIR 24 262 0 372 228 41 76 chrX 151778081 151778252 -25195888 - MIR SINE MIR -81 181 17 2549 77 0 0 chrX 151778255 151778565 -25195575 - AluSg SINE Alu 0 310 1 183 279 38 51 chrX 151778664 151778743 -25195397 + L3 LINE CR1 979 1056 -521 25 51 0 0 chrX 151778810 151778849 -25195291 + AT_rich Low_complexity Low_complexity 1 39 0 180 176 0 0 chrX 151779209 151779243 -25194897 + (TA)n Simple_repeat Simple_repeat 1 34 0 3061 151 6 12 chrX 151779521 151780032 -25194108 + L1MA4 LINE L1 5758 6265 -35 607 318 24 5 chrX 151780510 151780721 -25193419 - MIR SINE MIR -30 232 18 2138 73 11 4 chrX 151780814 151781089 -25193051 - L1MA1 LINE L1 -9 6293 6017 375 200 69 55 chrX 151781240 151781385 -25192755 + L1 LINE L1 4902 5048 -1098 * 5692 162 18 56 chrX 151781362 151781480 -25192660 + L1MA9 LINE L1 4166 4287 -2025 2159 124 0 0 chrX 151781480 151781786 -25192354 + AluSc SINE Alu 1 306 -3 5692 162 18 56 chrX 151781786 151782778 -25191362 + L1MA9 LINE L1 4287 5315 -997 1611 183 0 44 chrX 151782778 151782900 -25191240 + AluJo SINE Alu 1 127 -185 1877 154 0 33 chrX 151782900 151783206 -25190934 - AluSx SINE Alu -15 297 2 1611 183 0 44 chrX 151783206 151783378 -25190762 + AluJo SINE Alu 127 282 -30 5692 162 18 56 chrX 151783378 151783762 -25190378 + L1MA9 LINE L1 5315 5593 -719 2270 123 0 0 chrX 151783762 151784071 -25190069 + AluSx SINE Alu 1 309 -3 5692 162 18 56 chrX 151784071 151784270 -25189870 + L1MA9 LINE L1 5593 5798 -514 1649 167 41 2 chrX 151784456 151784853 -25189287 + L1MA9 LINE L1 5781 6290 -22 438 263 136 66 chrX 151785038 151785339 -25188801 + L1ME3 LINE L1 5531 5852 -310 534 307 75 75 chrX 151786648 151786997 -25187143 - L2 LINE L2 0 3272 2924 5152 181 25 63 chrX 151787044 151787240 -25186900 + L1PA16 LINE L1 4125 4327 -1838 2984 30 3 3 chrX 151787240 151787572 -25186568 + L1PA4 LINE L1 5813 6149 -6 5152 181 25 63 chrX 151787572 151788307 -25185833 + L1PA16 LINE L1 4327 4976 -1189 1664 169 12 52 chrX 151788307 151788805 -25185335 + AluJo SINE Alu 1 312 0 5152 181 25 63 chrX 151788805 151789265 -25184875 + L1PA16 LINE L1 4976 5452 -713 1179 53 47 0 chrX 151789265 151789415 -25184725 + BC200 scRNA scRNA 1 157 -43 3498 116 6 4 chrX 151789416 151789923 -25184217 + L1PA16 LINE L1 5438 5945 -221 21 36 0 0 chrX 151790140 151790168 -25183972 + AT_rich Low_complexity Low_complexity 1 28 0 181 287 109 69 chrX 151790220 151790422 -25183718 - L2 LINE L2 -912 2402 2193 249 258 0 0 chrX 151791002 151791064 -25183076 + (CATCT)n Simple_repeat Simple_repeat 1 62 0 284 310 87 88 chrX 151791086 151791643 -25182497 - L2 LINE L2 -4 3268 2712 189 305 65 81 chrX 151792270 151792516 -25181624 - L2 LINE L2 -482 2832 2591 455 302 32 37 chrX 151792955 151793144 -25180996 - MER5A DNA MER1_type 0 189 2 302 213 16 0 chrX 151793943 151794004 -25180136 - MIR SINE MIR -6 256 195 21 0 0 0 chrX 151794037 151794058 -25180082 + AT_rich Low_complexity Low_complexity 1 21 0 475 196 37 0 chrX 151794058 151794165 -25179975 - L1MA7 LINE L1 -1 6290 6180 589 244 94 0 chrX 151794228 151794355 -25179785 + L2 LINE L2 3133 3271 -1 256 327 109 19 chrX 151794388 151794544 -25179596 + MIR3 SINE MIR 32 201 -7 448 254 88 12 chrX 151795220 151795387 -25178753 - MIR SINE MIR -58 150 4 243 198 74 25 chrX 151795637 151795718 -25178422 + MIR SINE MIR 173 257 -5 396 333 51 24 chrX 151795742 151796117 -25178023 - L1ME4a LINE L1 -45 6076 5692 331 287 226 27 chrX 151796236 151796564 -25177576 - L1ME4a LINE L1 -748 5398 5006 11061 35 0 2 chrX 151796799 151798819 -25175321 - L1PA4 LINE L1 -3 6152 4137 1911 160 4 0 chrX 151799007 151799312 -25174828 - AluJb SINE Alu 0 306 1 324 250 89 57 chrX 151799539 151799663 -25174477 + MIR SINE MIR 23 150 -58 232 250 68 45 chrX 151799708 151799796 -25174344 - MIR SINE MIR -11 251 162 1494 204 3 29 chrX 151800226 151800534 -25173606 - AluJo SINE Alu -12 300 1 365 52 17 35 chrX 151800649 151800707 -25173433 + L1MA3 LINE L1 6240 6296 -9 25 31 0 0 chrX 151800713 151800745 -25173395 + AT_rich Low_complexity Low_complexity 1 32 0 279 350 30 35 chrX 151800987 151801190 -25172950 - L2 LINE L2 0 3313 3112 884 314 139 28 chrX 151801783 151802329 -25171811 - L2 LINE L2 -1372 1942 1280 864 174 0 0 chrX 151802329 151802461 -25171679 - FLAM_A SINE Alu -1 132 1 884 314 139 28 chrX 151802461 151802704 -25171436 - L2 LINE L2 -2034 1280 1065 446 367 77 14 chrX 151804359 151804787 -25169353 - L2 LINE L2 -2273 1041 587 413 307 59 25 chrX 151805062 151805264 -25168876 - MIR SINE MIR -1 261 53 200 176 0 0 chrX 151807149 151807183 -25166957 + CT-rich Low_complexity Low_complexity 1 34 0 252 86 0 0 chrX 151807183 151807218 -25166922 + (TG)n Simple_repeat Simple_repeat 2 36 0 2119 107 13 0 chrX 151807524 151807822 -25166318 + AluSp SINE Alu 1 302 -11 23 33 0 0 chrX 151808257 151808287 -25165853 + AT_rich Low_complexity Low_complexity 1 30 0 386 297 28 35 chrX 151808341 151808486 -25165654 - MIR3 SINE MIR -17 191 48 390 264 42 74 chrX 151808492 151808708 -25165432 + L1MC5 LINE L1 7705 7913 -48 2355 91 3 0 chrX 151808725 151809021 -25165119 + AluSp SINE Alu 1 297 -16 2086 137 7 3 chrX 151809155 151809462 -25164678 + AluSx SINE Alu 1 308 -4 2250 176 45 68 chrX 151809619 151810136 -25164004 + MLT1D LTR MaLR 1 505 0 2546 117 96 10 chrX 151810390 151810784 -25163356 - MSTA LTR MaLR 0 428 1 478 299 49 62 chrX 151811348 151811592 -25162548 - L3 LINE CR1 -1 1576 1336 290 355 0 19 chrX 151812367 151812474 -25161666 + MIR3 SINE MIR 89 193 -15 300 302 0 12 chrX 151813091 151813227 -25160913 + MER5A DNA MER1_type 1 188 -1 207 327 10 39 chrX 151813234 151813338 -25160802 + L2 LINE L2 2549 2649 -665 304 360 48 0 chrX 151813684 151813809 -25160331 + L2 LINE L2 3183 3313 0 2249 112 3 0 chrX 151814218 151814521 -25159619 - AluY SINE Alu -7 304 1 2404 157 77 23 chrX 151814534 151814975 -25159165 + MLT1C LTR MaLR 3 467 0 181 310 11 23 chrX 151815189 151815276 -25158864 - L2 LINE L2 -219 3053 2968 2198 95 3 7 chrX 151815363 151815679 -25158461 + AluSc SINE Alu 1 309 0 342 195 69 0 chrX 151815685 151815772 -25158368 + L1MC5 LINE L1 7811 7903 -58 6975 76 17 3 chrX 151815801 151817204 -25156936 - L1PA8 LINE L1 0 6172 4793 313 287 23 0 chrX 151817210 151817297 -25156843 + L1MC4 LINE L1 6614 6702 -1340 25836 134 17 76 chrX 151817298 151822391 -25151749 - L1P LINE L1 -1350 4796 2 2767 200 55 24 chrX 151823119 151823990 -25150150 + MER63D DNA MER1_type 87 1046 -15 459 258 13 26 chrX 151824068 151824219 -25149921 - L1MC5 LINE L1 -50 7911 7763 302 369 39 17 chrX 151824889 151825068 -25149072 - MER5A DNA MER1_type 0 189 7 461 237 219 33 chrX 151825365 151825580 -25148560 - MIR SINE MIR -6 256 2 1074 90 19 6 chrX 151825715 151825871 -25148269 - L1MB3 LINE L1 -4 6179 6022 186 43 0 0 chrX 151826425 151826448 -25147692 + (CCCCCT)n Simple_repeat Simple_repeat 1 23 0 299 364 21 14 chrX 151828111 151828254 -25145886 - MIR3 SINE MIR -63 145 2 5796 189 77 26 chrX 151828868 151830583 -25143557 + L1MA3 LINE L1 4487 6305 0 338 264 176 31 chrX 151830624 151830817 -25143323 + L1MC4a LINE L1 5177 5397 -749 215 319 11 11 chrX 151830949 151831043 -25143097 + (TA)n Simple_repeat Simple_repeat 2 95 0 290 265 136 25 chrX 151831294 151831456 -25142684 + L1MC4a LINE L1 5703 5882 -1926 261 313 56 56 chrX 151831781 151831941 -25142199 - L2 LINE L2 0 3272 3113 557 306 101 34 chrX 151831942 151832269 -25141871 - L2 LINE L2 -880 2434 2086 21 0 0 0 chrX 151832624 151832645 -25141495 + AT_rich Low_complexity Low_complexity 1 21 0 499 251 85 10 chrX 151832698 151832897 -25141243 - L1ME LINE L1 -343 5778 5565 320 225 152 19 chrX 151832992 151833209 -25140931 - L1P LINE L1 -737 5414 5176 226 260 27 14 chrX 151833400 151833473 -25140667 - L1ME LINE L1 -1311 4835 4762 1945 91 0 25 chrX 151833474 151833652 -25140488 - AluSp SINE Alu -2 311 141 2410 73 13 3 chrX 151833652 151833955 -25140185 - AluY SINE Alu -5 306 1 1945 91 0 25 chrX 151833955 151834051 -25140089 - AluSp SINE Alu -172 141 44 194 98 49 0 chrX 151834218 151834259 -25139881 + (GTTTG)n Simple_repeat Simple_repeat 3 45 0 182 287 115 32 chrX 151835432 151835589 -25138551 - L3 LINE CR1 -295 1282 1113 1057 269 48 69 chrX 151835599 151836568 -25137572 + L1MEc LINE L1 1531 2478 -3918 255 325 12 12 chrX 151836578 151836658 -25137482 - MIR3 SINE MIR -51 157 78 534 246 47 21 chrX 151837297 151837488 -25136652 - L1ME1 LINE L1 -6 6160 5965 256 159 0 0 chrX 151837535 151837579 -25136561 - HsTC2 DNA Tc2 -1 1897 1854 * 348 241 0 0 chrX 151837551 151837634 -25136506 - HsTC2 DNA Tc2 -1811 87 5 2500 64 0 3 chrX 151838319 151838631 -25135509 + AluY SINE Alu 1 311 0 1044 167 20 20 chrX 151838905 151839109 -25135031 + MER20 DNA MER1_type 16 219 0 263 287 111 28 chrX 151839163 151839271 -25134869 + MIR SINE MIR 56 172 -90 411 260 10 10 chrX 151839304 151839404 -25134736 + MIR SINE MIR 59 158 -104 1328 193 107 36 chrX 151839950 151839993 -25134147 - MLT2B1 LTR ERVL 0 520 481 330 26 0 0 chrX 151839993 151840032 -25134108 + (GA)n Simple_repeat Simple_repeat 1 39 0 * 360 43 0 0 chrX 151840031 151840077 -25134063 + (TG)n Simple_repeat Simple_repeat 2 47 0 1328 193 107 36 chrX 151840032 151840417 -25133723 - MLT2B1 LTR ERVL -39 481 110 611 84 14 0 chrX 151840426 151840569 -25133571 - L1MA5A LINE L1 -10 6287 5983 652 194 8 24 chrX 151840574 151840698 -25133442 + FLAM_A SINE Alu 1 122 -11 376 144 0 144 chrX 151840712 151840823 -25133317 - MLT2B1 LTR ERVL -425 95 1 254 279 86 71 chrX 151840828 151840968 -25133172 - MIR SINE MIR -92 170 29 543 215 25 77 chrX 151840968 151841150 -25132990 + MIR3 SINE MIR 30 202 -6 300 295 45 27 chrX 151841561 151841673 -25132467 - L2 LINE L2 0 3313 3200 434 284 34 69 chrX 151841775 151841979 -25132161 - MIR SINE MIR -46 216 20 268 200 114 57 chrX 151842441 151842546 -25131594 + MIR SINE MIR 47 157 -105 464 279 16 0 chrX 151842660 151842782 -25131358 + MIR3 SINE MIR 77 200 -8 1366 260 27 47 chrX 151843520 151844008 -25130132 + MER74B LTR ERVL 69 546 -76 254 242 42 32 chrX 151843929 151844024 -25130116 - MER88 LTR ERVL -290 174 79 * 252 292 132 61 chrX 151844191 151844616 -25129524 + L2 LINE L2 2394 2848 -466 431 263 30 0 chrX 151844856 151844955 -25129185 - MIR SINE MIR -100 162 61 418 365 91 26 chrX 151845279 151845662 -25128478 + L2 LINE L2 1702 2109 -1205 588 333 34 6 chrX 151845671 151845848 -25128292 + L3 LINE CR1 1394 1575 -2 301 228 22 33 chrX 151846636 151846728 -25127412 - L1ME LINE L1 -5934 136 46 2267 102 3 0 chrX 151849928 151850232 -25123908 + AluSp SINE Alu 1 305 -8 186 43 0 0 chrX 151851231 151851254 -25122886 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2319 61 0 0 chrX 151851254 151851554 -25122586 - AluY SINE Alu 0 300 1 1099 224 123 40 chrX 151852021 151852439 -25121701 - MLT1E1 LTR MaLR -232 399 1 23 33 0 0 chrX 151852750 151852780 -25121360 + AT_rich Low_complexity Low_complexity 1 30 0 1647 110 0 0 chrX 151852819 151853047 -25121093 + AluSg/x SINE Alu 83 310 0 611 247 16 6 chrX 151853144 151853341 -25120799 + L1ME LINE L1 92 279 -5939 991 202 65 38 chrX 151853436 151853808 -25120332 + L1ME LINE L1 839 1220 -5176 1121 277 69 12 chrX 151854234 151854653 -25119487 + L1MC4a LINE L1 37 479 -5917 279 139 0 0 chrX 151854663 151854706 -25119434 + MLT1A1 LTR MaLR 323 365 0 234 261 0 0 chrX 151854710 151854779 -25119361 + L1MC4a LINE L1 3433 3501 -2714 642 255 52 21 chrX 151854899 151855228 -25118912 + L1MC4a LINE L1 5020 5358 -857 506 134 0 0 chrX 151855235 151855317 -25118823 + L1PB4 LINE L1 6074 6155 -1 272 401 123 0 chrX 151855462 151855731 -25118409 - L2 LINE L2 -591 2723 2422 2099 135 3 3 chrX 151855778 151856074 -25118066 + AluJb SINE Alu 1 296 -16 528 247 90 10 chrX 151856249 151856440 -25117700 + MIR SINE MIR 42 250 -12 1263 225 57 50 chrX 151857141 151857563 -25116577 + L1MC4a LINE L1 5542 5966 -1911 2005 224 16 89 chrX 151857573 151858266 -25115874 + L1M4 LINE L1 16 657 -5885 2155 202 43 70 chrX 151858297 151859025 -25115115 + L1M4 LINE L1 5194 5901 -743 242 186 0 17 chrX 151859049 151859108 -25115032 - L1M4c LINE L1 -4739 1907 1850 1569 129 60 86 chrX 151859110 151859249 -25114891 - MER44D DNA MER2_type -1882 609 468 5202 87 6 1 chrX 151859249 151859958 -25114182 + L1PA10 LINE L1 5456 6167 -1 1569 129 60 86 chrX 151859958 151860166 -25113974 - MER44D DNA MER2_type -2023 468 1 2093 202 35 27 chrX 151860174 151860441 -25113699 - L1M4c LINE L1 -4813 1833 1570 1146 188 43 128 chrX 151860441 151860840 -25113300 + MLT1A1 LTR MaLR 1 365 0 2093 202 35 27 chrX 151860840 151861282 -25112858 - L1M4c LINE L1 -5076 1570 1111 327 293 19 0 chrX 151861287 151861393 -25112747 - L1M4 LINE L1 -2958 3188 3081 2361 81 3 3 chrX 151861397 151861704 -25112436 - AluSc SINE Alu -2 307 1 189 107 0 0 chrX 151861726 151861754 -25112386 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 559 170 21 0 chrX 151861758 151861852 -25112288 - FRAM SINE Alu -30 146 51 2279 231 22 84 chrX 151861852 151861868 -25112272 - L1M4 LINE L1 -3040 3106 3091 2028 132 10 10 chrX 151861868 151862179 -25111961 - AluSx SINE Alu -1 311 1 2279 231 22 84 chrX 151862179 151863151 -25110989 - L1M4 LINE L1 -3055 3091 2179 861 140 40 0 chrX 151863162 151863312 -25110828 - L1MA3 LINE L1 0 6305 6150 2139 182 2 0 chrX 151863312 151863741 -25110399 + L1 LINE L1 4864 5293 -853 5094 127 15 25 chrX 151863745 151864662 -25109478 - L1MA3 LINE L1 -144 6161 5254 526 311 115 39 chrX 151864769 151865126 -25109014 - L1M1 LINE L1 -1088 6477 6094 2040 201 15 9 chrX 151865172 151865630 -25108510 - L1M1 LINE L1 -2139 5426 4966 * 6308 173 34 43 chrX 151865629 151867312 -25106828 + L1PA16 LINE L1 3663 5332 -834 2366 97 0 0 chrX 151867312 151867611 -25106529 + AluSx SINE Alu 1 299 -13 6308 173 34 43 chrX 151867611 151868437 -25105703 + L1PA16 LINE L1 5332 6163 -3 1573 203 40 0 chrX 151868438 151868833 -25105307 - L1M1 LINE L1 -2592 4973 4563 * 36682 82 6 8 chrX 151868817 151874980 -25099160 - L1PA5 LINE L1 0 6154 11 4185 173 31 42 chrX 151874988 151876263 -25097877 - L1M1 LINE L1 -2969 4596 3331 5666 105 38 6 chrX 151876322 151877372 -25096768 - L1PA13 LINE L1 -11 6152 5070 2320 141 6 0 chrX 151877363 151877726 -25096414 - L1MA3 LINE L1 -623 5682 5318 * 4415 83 13 2 chrX 151877713 151878324 -25095816 + L1MA3 LINE L1 5688 6305 0 5942 158 15 9 chrX 151878324 151879630 -25094510 + L1MA4 LINE L1 4979 6293 -7 1679 141 7 24 chrX 151879682 151879979 -25094161 - L1PA13 LINE L1 -1056 5090 4799 * 15666 147 109 68 chrX 151879974 151880367 -25093773 - L1M1 LINE L1 -4216 3349 2974 5528 113 10 6 chrX 151880367 151881198 -25092942 - L1MA3 LINE L1 0 6305 5472 15666 147 109 68 chrX 151881198 151881496 -25092644 - L1M1 LINE L1 -4591 2974 2690 860 162 0 0 chrX 151881496 151881632 -25092508 + FLAM_C SINE Alu 1 136 -7 15666 147 109 68 chrX 151881632 151884009 -25090131 - L1M1 LINE L1 -4875 2690 14 4185 172 72 38 chrX 151884011 151884156 -25089984 - L1MCb LINE L1 -3969 2595 2456 1329 147 166 49 chrX 151884156 151884482 -25089658 - THE1B LTR MaLR 0 364 1 4185 172 72 38 chrX 151884482 151886272 -25087868 - L1MCb LINE L1 -4108 2456 502 2909 195 32 11 chrX 151886278 151886903 -25087237 + L1MB5 LINE L1 5537 6174 0 240 35 0 0 chrX 151886928 151886957 -25087183 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 998 233 43 102 chrX 151887116 151887182 -25086958 + L1ME3 LINE L1 5813 5881 -283 689 214 8 0 chrX 151887182 151887313 -25086827 + FLAM_A SINE Alu 1 132 -1 998 233 43 102 chrX 151887313 151887619 -25086521 + L1ME3 LINE L1 5881 6163 -1 * 2944 238 75 38 chrX 151887615 151888403 -25085737 + L1ME3 LINE L1 4762 5625 -537 2658 99 6 3 chrX 151888403 151888766 -25085374 + THE1B LTR MaLR 1 364 0 2944 238 75 38 chrX 151888766 151889318 -25084822 + L1ME3 LINE L1 5625 6155 -7 925 207 55 63 chrX 151889328 151889538 -25084602 + L1ME3 LINE L1 5675 5885 -277 3178 158 24 4 chrX 151889538 151890089 -25084051 + L1MB4 LINE L1 5613 6174 -6 925 207 55 63 chrX 151890089 151890291 -25083849 + L1ME3 LINE L1 5885 6162 0 354 285 26 12 chrX 151891754 151891882 -25082258 - MIR SINE MIR -60 148 21 30 45 0 0 chrX 151895440 151895484 -25078656 + AT_rich Low_complexity Low_complexity 1 44 0 218 128 0 51 chrX 151896323 151896362 -25077778 + (GGAGAA)n Simple_repeat Simple_repeat 3 39 0 25 0 0 0 chrX 151896922 151896947 -25077193 + GC_rich Low_complexity Low_complexity 1 25 0 205 138 0 0 chrX 151897189 151897218 -25076922 + (CCG)n Simple_repeat Simple_repeat 2 30 0 1476 62 0 0 chrX 151900688 151900866 -25073274 + AluYa5 SINE Alu 127 304 -7 314 177 0 16 chrX 151901419 151901481 -25072659 - MIR SINE MIR -64 144 84 233 56 0 28 chrX 151901558 151901594 -25072546 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2465 77 0 6 chrX 151901600 151901913 -25072227 - AluY SINE Alu 0 311 1 2745 136 17 21 chrX 151902003 151902481 -25071659 - L1MB7 LINE L1 -16 6168 5693 802 251 15 0 chrX 151902948 151903147 -25070993 + MIR SINE MIR 60 261 -1 1305 165 20 20 chrX 151904353 151904607 -25069533 - MIR SINE MIR 0 262 9 415 283 50 33 chrX 151904651 151904831 -25069309 - MER5A DNA MER1_type 0 189 7 725 170 123 18 chrX 151905150 151905321 -25068819 + MER53 DNA DNA 1 189 0 2271 108 8 47 chrX 151906702 151907063 -25067077 - THE1A LTR MaLR -8 347 1 2304 104 0 0 chrX 151907336 151907709 -25066431 - AluSg SINE Alu 0 373 1 463 257 34 17 chrX 151908377 151908552 -25065588 - L1M4 LINE L1 -1033 5113 4936 * 4443 191 28 19 chrX 151908537 151908633 -25065507 - L1M4 LINE L1 -1631 4515 4421 2294 122 0 0 chrX 151908633 151908945 -25065195 - AluSx SINE Alu 0 312 1 4443 191 28 19 chrX 151908945 151909873 -25064267 - L1M4 LINE L1 -1725 4421 3481 225 326 23 23 chrX 151910196 151910282 -25063858 - L1ME LINE L1 -5982 88 3 369 288 90 85 chrX 151910352 151910717 -25063423 - HAL1 LINE L1 -2130 377 11 737 276 41 27 chrX 151910726 151911019 -25063121 + L2 LINE L2 1822 2118 -1196 1138 128 36 36 chrX 151911897 151912093 -25062047 + MER3 DNA MER1_type 1 196 -13 331 235 53 82 chrX 151911945 151912115 -25062025 - MER3 DNA MER1_type -8 201 37 * 1837 259 89 59 chrX 151912353 151913013 -25061127 - MER115 DNA AcHobo -9 684 5 413 347 4 28 chrX 151914011 151914259 -25059881 + MIR SINE MIR 18 259 -3 6865 79 4 0 chrX 151914624 151916526 -25057614 + L1PA12 LINE L1 4213 6168 0 1020 216 48 51 chrX 151916535 151916877 -25057263 + MLT1B LTR MaLR 108 426 0 1116 217 32 57 chrX 151916904 151917218 -25056922 + MLT1C LTR MaLR 76 381 -86 804 141 50 0 chrX 151917351 151917472 -25056668 - FLAM_C SINE Alu -6 127 1 2170 122 0 0 chrX 151917496 151917800 -25056340 - AluSq SINE Alu -1 312 9 778 274 66 0 chrX 151918126 151918338 -25055802 + MIR SINE MIR 21 246 -16 1826 109 26 30 chrX 151918819 151919085 -25055055 + AluSx SINE Alu 23 287 -25 264 301 41 65 chrX 151919683 151919806 -25054334 - MIR3 SINE MIR -3 205 86 182 61 0 30 chrX 151920372 151920405 -25053735 + (CA)n Simple_repeat Simple_repeat 2 33 0 364 324 0 9 chrX 151921685 151921793 -25052347 + MIR3 SINE MIR 15 121 -87 1956 138 23 20 chrX 151922059 151922364 -25051776 + AluJb SINE Alu 1 306 -6 21 57 0 0 chrX 151923270 151923305 -25050835 + AT_rich Low_complexity Low_complexity 1 35 0 908 290 130 22 chrX 151923307 151924247 -25049893 + L1MEc LINE L1 170 1385 -5178 438 264 32 13 chrX 151924249 151924404 -25049736 + L1MEc LINE L1 1290 1447 -4937 * 3403 136 68 4 chrX 151924401 151924967 -25049173 + L1MA4A LINE L1 4696 5224 -1079 198 0 0 0 chrX 151924967 151924989 -25049151 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 3403 136 68 4 chrX 151924989 151925507 -25048633 + L1MA4A LINE L1 5224 5844 -459 6726 116 32 22 chrX 151925507 151926369 -25047771 - LOR1a-int LTR ERV1 -6848 1272 314 234 0 0 0 chrX 151926369 151926395 -25047745 + (CA)n Simple_repeat Simple_repeat 2 27 0 6726 116 32 22 chrX 151926395 151926713 -25047427 - LOR1a-int LTR ERV1 -7806 314 1 2818 142 52 15 chrX 151926713 151927192 -25046948 - LOR1a LTR ERV1 0 497 1 3042 126 28 0 chrX 151927192 151927654 -25046486 - Tigger1 DNA MER2_type -654 1764 1290 6860 128 39 3 chrX 151927676 151928742 -25045398 - Tigger1 DNA MER2_type -1313 1105 1 259 239 113 14 chrX 151928986 151929057 -25045083 - L2 LINE L2 -2 3311 3234 971 321 29 69 chrX 151929085 151929609 -25044531 + LTR67 LTR ERVL 31 534 -23 15519 62 10 10 chrX 151929609 151930728 -25043412 - L1PA6 LINE L1 0 6154 5037 2527 76 0 0 chrX 151930728 151931030 -25043110 - AluY SINE Alu -9 302 1 15519 62 10 10 chrX 151931030 151932631 -25041509 - L1PA6 LINE L1 -1117 5037 3432 971 321 29 69 chrX 151932631 151932655 -25041485 + LTR67 LTR ERVL 534 557 0 6844 168 21 5 chrX 151933109 151935289 -25038851 + L1PA16 LINE L1 3951 6163 -3 1778 246 63 8 chrX 151935483 151935971 -25038169 - L1ME3A LINE L1 -70 6100 5586 547 133 59 111 chrX 151935987 151936122 -25038018 - L1MD2 LINE L1 -476 5883 5756 275 246 90 0 chrX 151936178 151936300 -25037840 - L1ME3A LINE L1 -759 5387 5255 1208 237 25 42 chrX 151936475 151936830 -25037310 - L1ME2 LINE L1 -10 6154 5806 1754 137 74 0 chrX 151936832 151937117 -25037023 + LOR1a LTR ERV1 192 497 0 15781 102 35 16 chrX 151937117 151937435 -25036705 + LOR1a-int LTR ERV1 1 312 -7808 252 0 0 0 chrX 151937435 151937463 -25036677 + (TG)n Simple_repeat Simple_repeat 2 29 0 15781 102 35 16 chrX 151937463 151939661 -25034479 + LOR1a-int LTR ERV1 312 2643 -5477 222 222 0 0 chrX 151939667 151939721 -25034419 + (TA)n Simple_repeat Simple_repeat 1 54 0 490 169 25 42 chrX 151939724 151939842 -25034298 - LOR1-int LTR ERV1 -6071 2049 1934 261 180 0 0 chrX 151939849 151939899 -25034241 + (TG)n Simple_repeat Simple_repeat 1 50 0 7094 107 14 3 chrX 151939899 151940937 -25033203 + LOR1a-int LTR ERV1 2628 3676 -4444 8906 116 120 12 chrX 151940943 151940956 -25033184 - Tigger4(Zombi) DNA MER2_type -173 2558 2548 2174 111 10 3 chrX 151940956 151941244 -25032896 - AluSx SINE Alu -22 290 1 8906 116 120 12 chrX 151941244 151942636 -25031504 - Tigger4(Zombi) DNA MER2_type -183 2548 1001 822 50 0 0 chrX 151942636 151942736 -25031404 + LOR1a-int LTR ERV1 3684 3783 -4337 466 221 8 33 chrX 151942931 151943053 -25031087 + LOR1a-int LTR ERV1 4027 4145 -2186 * 2052 109 0 7 chrX 151943041 151943317 -25030823 + LOR1a-int LTR ERV1 3777 4050 -4070 1543 126 0 0 chrX 151943487 151943702 -25030438 + LOR1a-int LTR ERV1 6829 7043 -1077 373 145 16 0 chrX 151943702 151943764 -25030376 + MER72 LTR ERV1 10 72 -650 4095 112 12 11 chrX 151943764 151944634 -25029506 + LOR1a-int LTR ERV1 7168 8120 0 2864 135 68 19 chrX 151944634 151945108 -25029032 + LOR1a LTR ERV1 1 497 0 4530 90 42 6 chrX 151945108 151945743 -25028397 + Tigger1 DNA MER2_type 1761 2418 0 271 317 83 0 chrX 151945974 151946094 -25028046 + MIR SINE MIR 132 261 -1 629 243 60 115 chrX 151946204 151947020 -25027120 - LTR41 LTR ERVL 0 795 1 808 218 57 89 chrX 151947030 151947278 -25026862 + MIR SINE MIR 2 241 -21 21 36 0 0 chrX 151947354 151947382 -25026758 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chrX 151947388 151947413 -25026727 + AT_rich Low_complexity Low_complexity 1 25 0 714 187 45 7 chrX 151947458 151947613 -25026527 - L1PB4 LINE L1 -44 6112 5952 2618 142 3 0 chrX 151947641 151948028 -25026112 - L1PB4 LINE L1 0 6156 5769 2771 136 15 0 chrX 151948028 151948428 -25025712 - L1PA15 LINE L1 0 6165 5754 2564 96 42 0 chrX 151948428 151948780 -25025360 - L1PA8 LINE L1 -3 6169 5801 4834 69 2 0 chrX 151948786 151949369 -25024771 - L1PA8 LINE L1 0 6172 5589 1016 117 14 0 chrX 151949369 151949514 -25024626 - L1PA8 LINE L1 -413 5748 5602 * 3509 197 44 8 chrX 151949511 151949950 -25024190 - L1 LINE L1 -2931 3215 2734 24499 63 5 1 chrX 151949950 151953755 -25020385 - L1PA6 LINE L1 0 6154 2336 3509 197 44 8 chrX 151953755 151954090 -25020050 - L1 LINE L1 -3412 2734 2413 927 207 203 30 chrX 151954915 151955186 -25018954 - MLT1D LTR MaLR 0 505 188 280 104 21 188 chrX 151955251 151955287 -25018853 - MLT1D LTR MaLR -286 219 207 2562 56 7 7 chrX 151955287 151955593 -25018547 - AluY SINE Alu -5 306 1 280 104 21 188 chrX 151955593 151955652 -25018488 - MLT1D LTR MaLR -298 207 140 804 139 21 21 chrX 151955661 151955805 -25018335 - MLT1D LTR MaLR -340 165 22 180 303 237 0 chrX 151955991 151956067 -25018073 - MIR SINE MIR -116 146 53 478 127 13 13 chrX 151956174 151956253 -25017887 + MLT1C LTR MaLR 372 450 -17 1587 182 151 14 chrX 151956510 151956861 -25017279 + MLT1C LTR MaLR 69 467 0 813 269 18 35 chrX 151958999 151959226 -25014914 + MIR SINE MIR 7 229 -33 795 274 88 8 chrX 151959832 151960095 -25014045 - L2 LINE L2 -41 3272 2989 4183 188 18 95 chrX 151960117 151961001 -25013139 + L1PA13 LINE L1 1043 1818 -4976 1554 193 33 7 chrX 151961001 151961302 -25012838 + AluJo SINE Alu 4 312 0 4183 188 18 95 chrX 151961302 151961644 -25012496 + L1PA13 LINE L1 1818 2184 -4610 18380 202 31 24 chrX 151961756 151963615 -25010525 + L1PA15 LINE L1 1 1845 -4971 2446 93 0 0 chrX 151963615 151963926 -25010214 + AluSx SINE Alu 1 311 -1 18380 202 31 24 chrX 151963926 151968508 -25005632 + L1PA15 LINE L1 1845 6517 -299 2410 143 40 5 chrX 151968508 151968883 -25005257 + L1PB3 LINE L1 5756 6146 -8 22 0 0 0 chrX 151969055 151969077 -25005063 + AT_rich Low_complexity Low_complexity 1 22 0 1269 295 13 0 chrX 151969077 151969427 -25004713 - L2 LINE L2 -304 3009 2657 1260 150 4 49 chrX 151969596 151969822 -25004318 - MER20 DNA MER1_type -1 218 3 1754 256 105 16 chrX 151970129 151970702 -25003438 - L2 LINE L2 -672 2642 2019 354 221 42 0 chrX 151970764 151970859 -25003281 + LTR50 LTR ERVL 455 553 -242 * 1000 226 207 14 chrX 151970832 151971194 -25002946 + LTR50 LTR ERVL 364 795 0 842 173 62 123 chrX 151971195 151971455 -25002685 - L2 LINE L2 -2544 770 527 1002 35 0 0 chrX 151971943 151972058 -25002082 + L1PA5 LINE L1 6037 6151 -3 1247 241 87 15 chrX 151972695 151973085 -25001055 + L2 LINE L2 2376 2793 -521 3211 182 21 13 chrX 151973085 151973694 -25000446 - MLT1E2 LTR MaLR 0 626 13 1156 333 22 15 chrX 151973706 151974166 -24999974 + L2 LINE L2 2827 3289 -24 908 171 0 13 chrX 151974171 151974329 -24999811 + FRAM SINE Alu 18 173 -3 288 248 64 72 chrX 151974479 151974604 -24999536 - MIR3 SINE MIR -71 137 14 183 80 0 0 chrX 151974620 151974645 -24999495 + (A)n Simple_repeat Simple_repeat 1 25 0 2344 139 56 30 chrX 151974793 151975310 -24998830 - MLT2A2 LTR ERVL 0 554 1 800 268 26 17 chrX 151975484 151975715 -24998425 + MIR SINE MIR 2 234 -28 1155 274 44 50 chrX 151975726 151975892 -24998248 + L2 LINE L2 1647 1812 -1502 2341 95 3 0 chrX 151975892 151976188 -24997952 - AluSp SINE Alu -16 297 1 1155 274 44 50 chrX 151976188 151976520 -24997620 + L2 LINE L2 1812 2144 -1170 2700 155 17 5 chrX 151976520 151976939 -24997201 - MSTB LTR MaLR 0 426 3 1155 274 44 50 chrX 151976939 151976982 -24997158 + L2 LINE L2 2144 2186 -1128 1669 252 43 16 chrX 151977062 151977638 -24996502 - L1M4 LINE L1 -1226 4920 4329 22 0 0 0 chrX 151977877 151977899 -24996241 + AT_rich Low_complexity Low_complexity 1 22 0 498 264 19 39 chrX 151977944 151978099 -24996041 - MIR SINE MIR -40 222 71 283 233 110 0 chrX 151978281 151978354 -24995786 - L2 LINE L2 -213 3059 2979 661 198 9 0 chrX 151978358 151978469 -24995671 + AluJb SINE Alu 2 113 -199 2052 158 59 29 chrX 151978470 151979007 -24995133 + MLT2A2 LTR ERVL 3 552 -2 1011 133 61 39 chrX 151979009 151979189 -24994951 + AluJb SINE Alu 108 291 -21 4249 157 8 35 chrX 151979739 151980685 -24993455 + L1MB7 LINE L1 5098 6018 -166 1538 152 5 0 chrX 151980688 151980998 -24993142 + L1MA10 LINE L1 5126 5436 -743 838 183 0 0 chrX 151980998 151981135 -24993005 + FRAM SINE Alu 35 171 -5 1047 172 89 23 chrX 151981144 151981707 -24992433 + L1MA10 LINE L1 5651 6334 0 848 107 23 15 chrX 151981708 151981839 -24992301 + L1MB7 LINE L1 6048 6179 -5 21 0 0 0 chrX 151982315 151982336 -24991804 + AT_rich Low_complexity Low_complexity 1 21 0 256 264 86 35 chrX 151982793 151982940 -24991200 + MIR SINE MIR 38 191 -71 593 290 19 0 chrX 151982972 151983134 -24991006 - MIR SINE MIR -13 249 85 385 309 70 51 chrX 151983321 151983577 -24990563 + L2 LINE L2 450 710 -2604 1605 291 101 4 chrX 151983586 151984043 -24990097 - MLT2E LTR ERVL 0 628 128 198 304 0 0 chrX 151984196 151984242 -24989898 + L2 LINE L2 1876 1921 -1393 * 2123 326 63 37 chrX 151984234 151984338 -24989802 - L2 LINE L2 0 3313 3213 1846 171 7 0 chrX 151984338 151984637 -24989503 + AluJo SINE Alu 1 301 -11 2123 326 63 37 chrX 151984637 151984857 -24989283 - L2 LINE L2 -100 3213 3000 2272 102 0 0 chrX 151984857 151985152 -24988988 + AluSq SINE Alu 1 295 -18 2123 326 63 37 chrX 151985152 151986328 -24987812 - L2 LINE L2 -313 3000 1771 2723 244 95 58 chrX 151986571 151987675 -24986465 - L2 LINE L2 -5 3308 2128 2551 186 34 28 chrX 151987675 151988213 -24985927 + L1MB4 LINE L1 5640 6180 0 2723 244 95 58 chrX 151988213 151988428 -24985712 - L2 LINE L2 -1185 2128 1922 205 194 75 119 chrX 151988614 151988681 -24985459 + MIR SINE MIR 58 121 -87 489 52 0 0 chrX 151988727 151988785 -24985355 + HERVL LTR ERVL 3932 3989 -1665 1221 95 63 11 chrX 151988785 151988974 -24985166 - THE1C LTR MaLR -176 199 1 475 298 70 18 chrX 151989002 151989173 -24984967 + MIR SINE MIR 33 212 -50 452 316 103 6 chrX 151989186 151989360 -24984780 - MIR SINE MIR -43 219 29 319 253 132 63 chrX 151990323 151990513 -24983627 + MER20 DNA MER1_type 16 218 -1 364 264 171 45 chrX 151990836 151991234 -24982906 - L2 LINE L2 -882 2432 1985 211 226 81 16 chrX 151991296 151991358 -24982782 + L2 LINE L2 3207 3272 0 226 264 200 0 chrX 151992369 151992494 -24981646 - MIR3 SINE MIR -19 189 40 1274 248 86 21 chrX 151993212 151993852 -24980288 + L2 LINE L2 2581 3268 -45 375 60 0 0 chrX 151994733 151994783 -24979357 + (CA)n Simple_repeat Simple_repeat 2 51 0 309 245 0 13 chrX 151994980 151995139 -24979001 + (CA)n Simple_repeat Simple_repeat 1 157 0 725 158 0 18 chrX 151995148 151995262 -24978878 + FLAM_C SINE Alu 16 127 -16 26 64 0 0 chrX 151995939 151995986 -24978154 + AT_rich Low_complexity Low_complexity 1 47 0 284 290 32 11 chrX 151996097 151996190 -24977950 + MIR SINE MIR 52 146 -116 21 0 0 0 chrX 151996211 151996232 -24977908 + AT_rich Low_complexity Low_complexity 1 21 0 396 331 41 8 chrX 151996268 151996513 -24977627 + L1M4c LINE L1 1362 1614 -4770 1062 118 13 0 chrX 151996521 151996674 -24977466 + AluSx SINE Alu 1 155 -157 1299 207 98 34 chrX 151996775 151997133 -24977007 + L2 LINE L2 2274 2654 -660 452 236 246 11 chrX 151997360 151997551 -24976589 + MIR SINE MIR 15 250 -12 751 325 66 54 chrX 151997564 151998113 -24976027 - L2 LINE L2 0 3272 2704 753 168 0 0 chrX 151999097 151999210 -24974930 - FRAM SINE Alu -23 153 41 2215 95 0 0 chrX 151999310 151999594 -24974546 - AluSg SINE Alu -26 284 1 203 262 0 0 chrX 151999736 151999797 -24974343 + T-rich Low_complexity Low_complexity 1 61 0 640 305 101 12 chrX 152000624 152001031 -24973109 + HAL1 LINE L1 1228 1670 -837 871 300 52 39 chrX 152001065 152001428 -24972712 + LTR33 LTR ERVL 23 390 -131 2139 101 0 24 chrX 152002679 152002976 -24971164 - AluSx SINE Alu -22 290 1 2679 174 25 6 chrX 152002987 152003477 -24970663 - L1MB3 LINE L1 -3 6180 5682 290 344 16 8 chrX 152003590 152003718 -24970422 + ERVL LTR ERVL 862 990 -4774 2103 113 0 7 chrX 152004182 152004496 -24969644 + AluSq SINE Alu 1 312 0 616 79 0 0 chrX 152004578 152004654 -24969486 - L1PA5 LINE L1 -5 6149 6074 6650 29 16 0 chrX 152004780 152005617 -24968523 - L1PA4 LINE L1 -104 6051 5203 2412 267 46 44 chrX 152005633 152006088 -24968052 + L1ME3A LINE L1 3497 3949 -2197 2072 109 7 0 chrX 152006088 152006398 -24967742 + AluSq SINE Alu 1 312 0 2412 267 46 44 chrX 152006398 152007148 -24966992 + L1ME3A LINE L1 3949 4706 -1440 1605 171 68 4 chrX 152007149 152007430 -24966710 + AluJb SINE Alu 1 299 -13 5176 154 17 30 chrX 152007480 152007825 -24966315 + L1MA6 LINE L1 4408 4756 -1544 2191 107 3 3 chrX 152007825 152008123 -24966017 + AluSp SINE Alu 1 298 -15 5176 154 17 30 chrX 152008123 152009525 -24964615 + L1MA6 LINE L1 4756 6300 0 400 281 60 60 chrX 152009533 152009790 -24964350 + L1ME3A LINE L1 4771 5030 -1116 673 194 23 23 chrX 152009790 152009919 -24964221 + FLAM_A SINE Alu 1 129 -4 400 281 60 60 chrX 152009919 152009942 -24964198 + L1ME3A LINE L1 5029 5051 -1095 2235 108 0 7 chrX 152009948 152010253 -24963887 + AluSg SINE Alu 1 303 -7 797 236 103 30 chrX 152010347 152010618 -24963522 - LTR33A LTR ERVL -232 291 1 1542 243 83 25 chrX 152010680 152010738 -24963402 + L1ME3A LINE L1 5128 5181 -989 2131 135 6 0 chrX 152010738 152011049 -24963091 + AluSq SINE Alu 1 313 0 1542 243 83 25 chrX 152011049 152011747 -24962393 + L1ME3A LINE L1 5181 5947 -223 214 218 18 0 chrX 152011768 152011823 -24962317 + (TA)n Simple_repeat Simple_repeat 2 57 0 1044 168 0 0 chrX 152011824 152011979 -24962161 - AluJb SINE Alu -24 288 134 2172 107 7 0 chrX 152011979 152012269 -24961871 - AluSg SINE Alu -18 292 1 757 299 122 35 chrX 152012575 152013003 -24961137 + HAL1 LINE L1 4 468 -2039 2734 245 83 77 chrX 152013184 152013774 -24960366 + HAL1 LINE L1 970 1555 -952 2195 118 0 0 chrX 152013774 152014078 -24960062 + AluSg SINE Alu 1 304 -6 2734 245 83 77 chrX 152014078 152014253 -24959887 + HAL1 LINE L1 1555 1727 -780 3298 43 0 0 chrX 152014253 152014624 -24959516 + L1PA6 LINE L1 5783 6153 -1 2734 245 83 77 chrX 152014624 152014969 -24959171 + HAL1 LINE L1 1727 2068 -439 4014 149 7 3 chrX 152014969 152015572 -24958568 - MER6A DNA MER2_type 0 605 1 2734 245 83 77 chrX 152015572 152015984 -24958156 + HAL1 LINE L1 2068 2504 -3 1665 183 0 3 chrX 152016009 152016298 -24957842 + AluJo SINE Alu 9 296 -16 2344 109 0 0 chrX 152016299 152016612 -24957528 + AluSq SINE Alu 1 313 0 1562 256 91 30 chrX 152016708 152017638 -24956502 + L1ME3A LINE L1 4963 5951 -219 824 160 0 62 chrX 152017677 152017821 -24956319 - FLAM_C SINE Alu -7 136 2 457 195 0 0 chrX 152017912 152017989 -24956151 + MLT2E LTR ERVL 539 615 -13 273 75 0 0 chrX 152018066 152018106 -24956034 + (CA)n Simple_repeat Simple_repeat 2 41 0 317 190 37 12 chrX 152018267 152018350 -24955790 + L1MC4 LINE L1 1995 6983 -1339 291 157 0 0 chrX 152018353 152018404 -24955736 + (TA)n Simple_repeat Simple_repeat 2 52 0 369 228 13 0 chrX 152018407 152018508 -24955632 + L1MC4 LINE L1 1995 6983 -1339 316 296 0 31 chrX 152018439 152018537 -24955603 - L1MC4 LINE L1 -1339 6703 6609 * 204 179 0 0 chrX 152018740 152018779 -24955361 + T-rich Low_complexity Low_complexity 76 114 0 1762 169 0 38 chrX 152018782 152019102 -24955038 - AluJb SINE Alu -2 310 3 234 139 0 0 chrX 152019134 152019170 -24954970 + L1MA5 LINE L1 6062 6097 -203 1142 170 12 24 chrX 152019276 152019523 -24954617 - SVA Other Other -710 676 433 2378 57 11 3 chrX 152019537 152019819 -24954321 - AluSp SINE Alu -29 284 1 1489 123 0 0 chrX 152019819 152020031 -24954109 + L1MA5 LINE L1 6087 6298 -2 248 262 12 0 chrX 152020159 152020243 -24953897 + L1M4 LINE L1 3729 3813 -2333 1558 238 85 29 chrX 152020251 152020484 -24953656 + L2 LINE L2 2284 2503 -811 2076 162 3 34 chrX 152020484 152020842 -24953298 + MER7A DNA MER2_type 2 346 0 1558 238 85 29 chrX 152020842 152021057 -24953083 + L2 LINE L2 2503 2757 -557 779 219 30 0 chrX 152021117 152021281 -24952859 + L2 LINE L2 3145 3313 0 2472 71 3 0 chrX 152021641 152021950 -24952190 - AluY SINE Alu 0 311 2 14769 50 1 5 chrX 152122179 152124164 -24849976 + L1P LINE L1 2135 4112 -2034 295 119 90 0 chrX 152125507 152125574 -24848566 + GA-rich Low_complexity Low_complexity 1 73 0 304 306 68 34 chrX 152125574 152125721 -24848419 + MIR3 SINE MIR 21 172 -36 4733 163 31 27 chrX 152125818 152127196 -24846944 + L1MA9 LINE L1 4407 5779 -533 206 62 31 0 chrX 152127196 152127228 -24846912 + (CA)n Simple_repeat Simple_repeat 2 34 0 4733 163 31 27 chrX 152127228 152127570 -24846570 + L1MA9 LINE L1 5779 6118 -194 2223 109 3 3 chrX 152127570 152127872 -24846268 - AluSg SINE Alu -8 302 1 4733 163 31 27 chrX 152127872 152127898 -24846242 + L1MA9 LINE L1 6118 6142 -170 450 0 0 0 chrX 152127898 152127948 -24846192 + (CA)n Simple_repeat Simple_repeat 1 50 0 4733 163 31 27 chrX 152127948 152128087 -24846053 + L1MA9 LINE L1 6142 6312 0 618 251 58 70 chrX 152128589 152128932 -24845208 + L1ME4a LINE L1 5782 6120 -1 25 31 0 0 chrX 152129124 152129156 -24844984 + AT_rich Low_complexity Low_complexity 1 32 0 652 314 44 27 chrX 152129266 152129965 -24844175 - L1ME LINE L1 -377 5744 5039 393 294 192 18 chrX 152131170 152131625 -24842515 - L2 LINE L2 -339 2975 2446 363 23 0 0 chrX 152131641 152131685 -24842455 + (TC)n Simple_repeat Simple_repeat 1 44 0 346 316 94 8 chrX 152131731 152131848 -24842292 + L1MC4a LINE L1 5987 6113 -1695 835 305 91 40 chrX 152131853 152132557 -24841583 + L1MC4a LINE L1 6132 6871 -937 405 298 68 55 chrX 152133105 152133531 -24840609 + L1MEc LINE L1 695 1109 -5010 404 238 11 22 chrX 152133779 152133960 -24840180 + GA-rich Low_complexity Low_complexity 2 180 0 4666 65 14 0 chrX 152134020 152134589 -24839551 - L1PA8 LINE L1 -1 6171 5595 187 221 324 0 chrX 152134677 152134745 -24839395 - MIR SINE MIR -5 203 113 223 259 103 0 chrX 152135314 152135372 -24838768 - L3 LINE CR1 -99 1478 1415 615 299 5 32 chrX 152136610 152136827 -24837313 - L2 LINE L2 -952 2362 2152 789 305 21 4 chrX 152136968 152137201 -24836939 - MIR SINE MIR -22 240 4 278 360 64 30 chrX 152137713 152137916 -24836224 + L2 LINE L2 3043 3252 -20 282 364 45 18 chrX 152138101 152138211 -24835929 + L2 LINE L2 3116 3228 -44 287 209 0 22 chrX 152138239 152138330 -24835810 + GA-rich Low_complexity Low_complexity 3 91 0 257 335 132 24 chrX 152139270 152139437 -24834703 + MIR SINE MIR 24 208 -54 21 0 0 0 chrX 152139463 152139484 -24834656 + AT_rich Low_complexity Low_complexity 1 21 0 257 216 59 59 chrX 152140030 152140132 -24834008 + L2 LINE L2 3212 3313 0 3414 214 34 31 chrX 152140153 152141097 -24833043 - L1M4 LINE L1 -1463 4683 3737 502 271 111 26 chrX 152141101 152141478 -24832662 - L1MDa LINE L1 -4591 1538 1130 186 43 0 0 chrX 152141480 152141503 -24832637 + (TCTCCC)n Simple_repeat Simple_repeat 3 25 0 1132 308 77 35 chrX 152141503 152142358 -24831782 - L1MDa LINE L1 -4956 1163 273 922 248 120 112 chrX 152142537 152143288 -24830852 - L1MC4 LINE L1 -1 8041 7285 259 278 37 46 chrX 152143409 152143517 -24830623 - L2 LINE L2 -43 3229 3123 369 338 40 7 chrX 152143624 152143772 -24830368 - L2 LINE L2 -9 3263 3111 293 351 32 52 chrX 152144070 152144318 -24829822 - L3 LINE CR1 -435 1142 900 188 35 35 0 chrX 152145722 152145751 -24828389 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 265 273 0 15 chrX 152146118 152146184 -24827956 - MIR SINE MIR -124 84 20 207 0 0 0 chrX 152146265 152146288 -24827852 + (A)n Simple_repeat Simple_repeat 1 23 0 231 256 70 70 chrX 152146798 152146927 -24827213 - MER5B DNA MER1_type -49 129 1 332 271 0 37 chrX 152147708 152147815 -24826325 - MIR SINE MIR -141 121 19 1003 241 32 32 chrX 152148338 152148591 -24825549 - MIR SINE MIR -1 261 9 182 156 22 0 chrX 152148829 152148874 -24825266 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 454 323 55 6 chrX 152148930 152149094 -24825046 + MIR SINE MIR 20 191 -71 282 322 29 33 chrX 152149455 152149584 -24824556 - MIR SINE MIR -86 122 18 463 305 24 12 chrX 152150319 152150483 -24823657 - MIR3 SINE MIR -28 180 15 2210 102 3 16 chrX 152150515 152150820 -24823320 + AluSq SINE Alu 1 301 -12 1361 198 210 26 chrX 152151197 152151612 -24822528 + MLT1D LTR MaLR 13 503 -2 1304 197 106 58 chrX 152153394 152153790 -24820350 + MER96B DNA MER1_type 3 417 0 207 88 0 0 chrX 152153882 152153916 -24820224 + (TTAGG)n Simple_repeat Simple_repeat 3 36 0 43944 32 21 1 chrX 152154549 152160580 -24813560 - L1HS LINE L1 0 6155 1 184 333 49 25 chrX 152160583 152160664 -24813476 + L2 LINE L2 2942 3024 -248 467 211 0 0 chrX 152160740 152160815 -24813325 + Tigger5 DNA MER2_type 4 78 -2245 384 211 40 0 chrX 152160815 152160891 -24813249 - Tigger5 DNA MER2_type -3 2320 2242 344 167 0 0 chrX 152160887 152160941 -24813199 + Tigger5 DNA MER2_type 2264 2317 -6 * 648 267 43 11 chrX 152160953 152161390 -24812750 + HAL1 LINE L1 84 657 -1850 2451 146 86 4 chrX 152161578 152162031 -24812109 - L1MB2 LINE L1 -2 6169 5680 208 275 55 115 chrX 152162177 152162359 -24811781 + MIR SINE MIR 35 205 -57 184 167 42 0 chrX 152163242 152163290 -24810850 + MIR SINE MIR 86 135 -73 180 0 0 0 chrX 152163823 152163843 -24810297 + (T)n Simple_repeat Simple_repeat 1 20 0 270 0 0 0 chrX 152164179 152164209 -24809931 + (TG)n Simple_repeat Simple_repeat 2 31 0 205 246 46 0 chrX 152164870 152164935 -24809205 + CT-rich Low_complexity Low_complexity 3 70 0 348 246 97 30 chrX 152165367 152165501 -24808639 - L1ME4a LINE L1 0 6121 5979 1969 115 23 40 chrX 152165552 152165856 -24808284 - AluSx SINE Alu -4 308 10 716 197 7 14 chrX 152166263 152166410 -24807730 + L2 LINE L2 3168 3313 0 201 276 17 35 chrX 152166622 152166680 -24807460 - MIR SINE MIR -135 73 17 371 80 0 0 chrX 152167389 152167439 -24806701 - L1PA12 LINE L1 0 6168 6119 412 323 6 66 chrX 152167797 152168130 -24806010 - L2 LINE L2 -2 3270 2878 194 327 89 0 chrX 152168279 152168380 -24805760 - L2 LINE L2 -845 2469 2360 802 306 173 26 chrX 152168533 152169112 -24805028 - L2 LINE L2 -826 2488 1825 309 324 23 12 chrX 152169112 152169285 -24804855 + L1M4 LINE L1 4341 4515 -1631 1959 278 62 24 chrX 152169297 152169801 -24804339 + L1ME2 LINE L1 4373 4856 -1306 2186 117 3 0 chrX 152169801 152170100 -24804040 + AluSp SINE Alu 1 300 -13 1959 278 62 24 chrX 152170100 152171134 -24803006 + L1ME2 LINE L1 4856 5957 -205 400 122 24 0 chrX 152171134 152171216 -24802924 + (TA)n Simple_repeat Simple_repeat 1 84 0 2417 89 3 0 chrX 152171379 152171683 -24802457 + AluSp SINE Alu 1 305 -8 241 276 14 34 chrX 152171686 152171814 -24802326 + L1MC5 LINE L1 7845 8037 -5 183 246 46 15 chrX 152171900 152171965 -24802175 - L2 LINE L2 -553 2761 2695 304 395 0 0 chrX 152172802 152172921 -24801219 - MIR SINE MIR -55 153 35 21 36 0 0 chrX 152173047 152173075 -24801065 + AT_rich Low_complexity Low_complexity 1 28 0 319 341 60 28 chrX 152173562 152173744 -24800396 + L2 LINE L2 3083 3270 -2 227 365 32 8 chrX 152174706 152174832 -24799308 - L2 LINE L2 -234 3038 2910 506 219 62 16 chrX 152174908 152175036 -24799104 + L2 LINE L2 3180 3313 0 214 184 20 0 chrX 152176752 152176801 -24797339 + (TGG)n Simple_repeat Simple_repeat 3 52 0 723 283 6 6 chrX 152176969 152177135 -24797005 + MIR3 SINE MIR 16 181 -27 1052 115 85 0 chrX 152177552 152177717 -24796423 - AluSg/x SINE Alu 0 312 134 311 232 24 0 chrX 152177989 152178085 -24796055 - MIR3 SINE MIR -6 202 103 261 335 170 35 chrX 152178446 152178676 -24795464 - L2 LINE L2 0 3272 3012 699 241 79 49 chrX 152178716 152178919 -24795221 - MIR SINE MIR -52 210 2 202 288 38 50 chrX 152178923 152179003 -24795137 - L2 LINE L2 -310 2962 2884 650 325 154 17 chrX 152179119 152179630 -24794510 - L2 LINE L2 -610 2704 2077 215 188 31 78 chrX 152181436 152181500 -24792640 + L2 LINE L2 3204 3264 -8 952 249 15 0 chrX 152181944 152182149 -24791991 - MIR SINE MIR -21 241 34 203 300 80 60 chrX 152182421 152182521 -24791619 + L2 LINE L2 3142 3243 -29 231 312 88 48 chrX 152182718 152182968 -24791172 - L3 LINE CR1 -5 1572 1313 481 248 61 3 chrX 152183643 152183818 -24790322 + MIR3 SINE MIR 1 184 -62 2176 141 128 8 chrX 152183916 152184298 -24789842 + MSTA LTR MaLR 1 428 0 10679 125 6 39 chrX 152184300 152185931 -24788209 + MSTA-int LTR MaLR 3 1580 0 2007 150 134 24 chrX 152185933 152186314 -24787826 + MSTA LTR MaLR 3 425 -3 194 88 0 29 chrX 152187269 152187303 -24786837 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 271 224 105 66 chrX 152188060 152188136 -24786004 - L2 LINE L2 -25 3247 3169 2217 156 45 0 chrX 152188137 152188516 -24785624 + MER57A LTR ERV1 8 403 0 296 323 24 39 chrX 152188534 152188661 -24785479 - MIR3 SINE MIR -49 159 35 1668 170 3 17 chrX 152189910 152190198 -24783942 - AluJo SINE Alu -22 290 7 588 277 48 0 chrX 152190548 152190714 -24783426 + MIR3 SINE MIR 20 193 -15 728 340 64 3 chrX 152190872 152191216 -24782924 - LTR16B LTR ERVL 0 464 100 360 367 39 35 chrX 152191549 152191778 -24782362 - L3 LINE CR1 -5 1572 1343 2870 134 11 29 chrX 152192052 152192506 -24781634 + L1PA16 LINE L1 5711 6156 -10 932 207 95 18 chrX 152193702 152193924 -24780216 + MIR SINE MIR 24 262 0 388 240 35 70 chrX 152194091 152194262 -24779878 - MIR SINE MIR -81 181 17 2549 77 0 0 chrX 152194265 152194575 -24779565 - AluSg SINE Alu 0 310 1 183 279 38 51 chrX 152194674 152194753 -24779387 + L3 LINE CR1 979 1056 -521 25 51 0 0 chrX 152194819 152194858 -24779282 + AT_rich Low_complexity Low_complexity 1 39 0 180 176 0 0 chrX 152195218 152195252 -24778888 + (TA)n Simple_repeat Simple_repeat 1 34 0 3046 153 6 12 chrX 152195530 152196041 -24778099 + L1MA4 LINE L1 5758 6265 -35 1619 181 7 3 chrX 152296333 152296632 -24677508 + L1MB3 LINE L1 5881 6180 -3 2162 101 0 24 chrX 152296643 152296940 -24677200 + AluSx SINE Alu 1 290 -22 879 300 52 39 chrX 152298191 152298554 -24675586 - LTR33 LTR ERVL -131 390 23 610 305 101 12 chrX 152298588 152298995 -24675145 - HAL1 LINE L1 -837 1670 1228 203 262 0 0 chrX 152299822 152299883 -24674257 + A-rich Low_complexity Low_complexity 1 61 0 2266 99 0 0 chrX 152300025 152300318 -24673822 + AluSg SINE Alu 1 293 -17 1140 142 0 0 chrX 152300321 152300688 -24673452 + (TA)n Simple_repeat Simple_repeat 1 367 0 301 322 0 0 chrX 152300699 152300789 -24673351 - L1MC4 LINE L1 -1339 6703 6614 * 312 230 0 24 chrX 152300711 152300837 -24673303 + L1MC4 LINE L1 1995 6983 -1339 317 255 0 43 chrX 152300857 152300951 -24673189 + L1MC4 LINE L1 6614 6703 -1339 327 203 0 0 chrX 152300952 152301021 -24673119 + (TA)n Simple_repeat Simple_repeat 1 69 0 305 287 23 0 chrX 152301026 152301113 -24673027 + L1MC4 LINE L1 6615 6703 -1339 * 310 176 29 15 chrX 152301089 152301157 -24672983 + L1MCa LINE L1 1995 2063 -4363 291 157 0 0 chrX 152301160 152301211 -24672929 + (TA)n Simple_repeat Simple_repeat 2 52 0 361 250 11 0 chrX 152301214 152301302 -24672838 + L1MC4 LINE L1 6615 6703 -1339 313 296 0 31 chrX 152301246 152301344 -24672796 - L1MC4 LINE L1 -1339 6703 6609 * 204 179 0 0 chrX 152301547 152301586 -24672554 + T-rich Low_complexity Low_complexity 76 114 0 1777 169 0 38 chrX 152301589 152301909 -24672231 - AluJb SINE Alu -2 310 3 232 139 0 0 chrX 152301941 152301977 -24672163 + L1MA5 LINE L1 6062 6097 -203 1185 170 12 24 chrX 152302083 152302330 -24671810 - SVA Other Other -710 676 433 2404 57 11 3 chrX 152302344 152302626 -24671514 - AluSp SINE Alu -29 284 1 1440 123 0 0 chrX 152302626 152302838 -24671302 + L1MA5 LINE L1 6087 6298 -2 15565 175 16 19 chrX 152303015 152306774 -24667366 + L1PA15 LINE L1 2122 5866 -299 2267 146 40 5 chrX 152306774 152307149 -24666991 + L1PB3 LINE L1 5756 6146 -8 22 0 0 0 chrX 152307321 152307343 -24666797 + AT_rich Low_complexity Low_complexity 1 22 0 1185 292 13 0 chrX 152307343 152307693 -24666447 - L2 LINE L2 -304 3009 2657 1183 150 4 49 chrX 152307862 152308088 -24666052 - MER20 DNA MER1_type -1 218 3 1592 256 105 16 chrX 152308395 152308968 -24665172 - L2 LINE L2 -672 2642 2019 359 221 42 0 chrX 152309030 152309125 -24665015 + LTR50 LTR ERVL 455 553 -242 * 1004 221 207 14 chrX 152309098 152309460 -24664680 + LTR50 LTR ERVL 364 795 0 750 177 58 119 chrX 152309461 152309721 -24664419 - L2 LINE L2 -2544 770 527 957 35 0 0 chrX 152310209 152310324 -24663816 + L1PA5 LINE L1 6037 6151 -3 1129 254 80 8 chrX 152310962 152311352 -24662788 + L2 LINE L2 2376 2793 -521 3218 182 21 13 chrX 152311352 152311961 -24662179 - MLT1E2 LTR MaLR 0 626 13 1031 333 22 15 chrX 152311973 152312433 -24661707 + L2 LINE L2 2827 3289 -24 916 171 0 13 chrX 152312438 152312596 -24661544 + FRAM SINE Alu 18 173 -3 250 248 64 72 chrX 152312746 152312871 -24661269 - MIR3 SINE MIR -71 137 14 183 80 0 0 chrX 152312887 152312912 -24661228 + (A)n Simple_repeat Simple_repeat 1 25 0 2355 139 56 30 chrX 152313060 152313577 -24660563 - MLT2A2 LTR ERVL 0 554 1 725 268 26 17 chrX 152313751 152313982 -24660158 + MIR SINE MIR 2 234 -28 1027 273 44 50 chrX 152313993 152314159 -24659981 + L2 LINE L2 1647 1812 -1502 2370 94 3 0 chrX 152314159 152314456 -24659684 - AluSp SINE Alu -15 298 1 1027 273 44 50 chrX 152314456 152314788 -24659352 + L2 LINE L2 1812 2144 -1170 2547 155 17 5 chrX 152314788 152315207 -24658933 - MSTB LTR MaLR 0 426 3 1027 273 44 50 chrX 152315207 152315250 -24658890 + L2 LINE L2 2144 2186 -1128 1628 252 43 16 chrX 152315330 152315906 -24658234 - L1M4 LINE L1 -1226 4920 4329 22 0 0 0 chrX 152316145 152316167 -24657973 + AT_rich Low_complexity Low_complexity 1 22 0 455 264 19 39 chrX 152316212 152316367 -24657773 - MIR SINE MIR -40 222 71 265 227 106 0 chrX 152316549 152316615 -24657525 - L2 LINE L2 -213 3059 2987 616 198 9 0 chrX 152316626 152316737 -24657403 + AluJb SINE Alu 2 113 -199 2066 158 59 29 chrX 152316738 152317275 -24656865 + MLT2A2 LTR ERVL 3 552 -2 1020 133 61 39 chrX 152317277 152317457 -24656683 + AluJb SINE Alu 108 291 -21 4209 157 8 35 chrX 152318007 152318953 -24655187 + L1MB7 LINE L1 5098 6018 -166 1517 152 5 0 chrX 152318956 152319266 -24654874 + L1M2 LINE L1 5126 5436 -743 21 0 0 0 chrX 152319645 152319666 -24654474 + AT_rich Low_complexity Low_complexity 1 21 0 549 290 19 0 chrX 152320303 152320465 -24653675 - MIR SINE MIR -13 249 85 317 309 70 51 chrX 152320652 152320908 -24653232 + L2 LINE L2 450 710 -2604 1616 291 101 4 chrX 152320917 152321374 -24652766 - MLT2E LTR ERVL 0 628 128 1806 326 63 37 chrX 152321565 152321669 -24652471 - L2 LINE L2 0 3313 3213 1859 171 7 0 chrX 152321669 152321968 -24652172 + AluJo SINE Alu 1 301 -11 1806 326 63 37 chrX 152321968 152322188 -24651952 - L2 LINE L2 -100 3213 3000 2287 102 0 0 chrX 152322188 152322483 -24651657 + AluSq SINE Alu 1 295 -18 1806 326 63 37 chrX 152322483 152323659 -24650481 - L2 LINE L2 -313 3000 1771 2424 245 95 58 chrX 152323901 152325005 -24649135 - L2 LINE L2 -5 3308 2128 2418 197 28 22 chrX 152325005 152325543 -24648597 + L1MB4 LINE L1 5640 6180 0 2424 245 95 58 chrX 152325543 152325758 -24648382 - L2 LINE L2 -1185 2128 1922 186 194 75 119 chrX 152325944 152326011 -24648129 + MIR SINE MIR 58 121 -87 489 52 0 0 chrX 152326057 152326115 -24648025 + HERVL LTR ERVL 3932 3989 -1665 1153 95 69 16 chrX 152326115 152326304 -24647836 - THE1C LTR MaLR -176 199 1 429 284 74 19 chrX 152326341 152326503 -24647637 + MIR SINE MIR 42 212 -50 405 316 103 6 chrX 152326516 152326690 -24647450 - MIR SINE MIR -43 219 29 326 221 121 80 chrX 152327664 152327843 -24646297 + MER20 DNA MER1_type 30 218 -1 309 279 156 29 chrX 152328213 152328553 -24645587 - L2 LINE L2 -939 2375 1993 197 196 89 18 chrX 152328626 152328682 -24645458 + L2 LINE L2 3207 3266 -6 196 264 200 0 chrX 152329699 152329824 -24644316 - MIR3 SINE MIR -19 189 40 1147 250 86 20 chrX 152330547 152331182 -24642958 + L2 LINE L2 2586 3268 -45 375 60 0 0 chrX 152332063 152332113 -24642027 + (CA)n Simple_repeat Simple_repeat 2 51 0 326 247 0 6 chrX 152332310 152332468 -24641672 + (CA)n Simple_repeat Simple_repeat 1 157 0 678 158 0 18 chrX 152332477 152332591 -24641549 + FLAM_C SINE Alu 16 127 -16 26 64 0 0 chrX 152333268 152333315 -24640825 + AT_rich Low_complexity Low_complexity 1 47 0 255 290 32 11 chrX 152333426 152333519 -24640621 + MIR SINE MIR 52 146 -116 21 0 0 0 chrX 152333540 152333561 -24640579 + AT_rich Low_complexity Low_complexity 1 21 0 1142 259 30 63 chrX 152333605 152333850 -24640290 + L1MEc LINE L1 1352 1575 -4821 2416 93 7 0 chrX 152333850 152334160 -24639980 + AluSx SINE Alu 1 312 0 1142 259 30 63 chrX 152334160 152334405 -24639735 + L1MEc LINE L1 1575 1826 -4570 200 233 50 33 chrX 152334405 152334465 -24639675 + L2 LINE L2 3209 3269 -44 298 295 0 0 chrX 152334628 152334706 -24639434 - L1ME4a LINE L1 -70 6331 6254 381 22 0 0 chrX 152334707 152334753 -24639387 + (TC)n Simple_repeat Simple_repeat 2 47 0 261 0 0 0 chrX 152334752 152334781 -24639359 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 607 279 43 37 chrX 152334851 152335101 -24639039 - L1ME4a LINE L1 -414 5987 5733 1064 71 0 0 chrX 152335101 152335249 -24638891 + L1PA8 LINE L1 6030 6177 0 607 279 43 37 chrX 152335249 152335338 -24638802 - L1ME4a LINE L1 -668 5733 5646 2472 71 3 0 chrX 152335553 152335862 -24638278 + AluY SINE Alu 2 311 0 779 219 30 0 chrX 152336222 152336386 -24637754 - L2 LINE L2 0 3313 3145 1558 238 85 29 chrX 152336446 152336661 -24637479 - L2 LINE L2 -557 2757 2555 2076 162 3 34 chrX 152336661 152337019 -24637121 - MER7A DNA MER2_type 0 346 2 1558 238 85 29 chrX 152337019 152337252 -24636888 - L2 LINE L2 -759 2555 2284 248 262 12 0 chrX 152337260 152337344 -24636796 - L1ME4a LINE L1 -2333 4093 4009 1458 127 0 0 chrX 152337472 152337684 -24636456 - L1MA5 LINE L1 -2 6298 6087 2378 57 11 3 chrX 152337684 152337966 -24636174 + AluSp SINE Alu 1 284 -29 1142 170 12 24 chrX 152337980 152338227 -24635913 + SVA Other Other 433 676 -710 234 139 0 0 chrX 152338333 152338369 -24635771 - L1MA5 LINE L1 -203 6097 6062 1712 175 0 38 chrX 152338404 152338765 -24635375 + AluJb SINE Alu 6 354 0 314 219 14 0 chrX 152338993 152339066 -24635074 - L1ME4a LINE L1 -4358 2068 1995 * 359 261 11 0 chrX 152339042 152339130 -24635010 - L1MC4 LINE L1 -1339 6983 6895 1047 167 0 0 chrX 152339133 152339420 -24634720 + (TA)n Simple_repeat Simple_repeat 2 288 0 2245 99 0 0 chrX 152339420 152339713 -24634427 - AluSg SINE Alu -17 293 1 203 262 0 0 chrX 152339855 152339916 -24634224 + T-rich Low_complexity Low_complexity 1 61 0 655 302 101 12 chrX 152340744 152341151 -24632989 + HAL1 LINE L1 1228 1670 -837 880 300 52 39 chrX 152341185 152341548 -24632592 + LTR33 LTR ERVL 23 390 -131 1821 146 0 33 chrX 152342752 152343053 -24631087 - AluSx SINE Alu -21 291 1 2610 180 25 6 chrX 152343064 152343554 -24630586 - L1MB3 LINE L1 -3 6180 5682 2094 113 0 7 chrX 152344259 152344573 -24629567 + AluSq SINE Alu 1 312 0 8068 25 21 0 chrX 152344652 152345591 -24628549 - L1PA4 LINE L1 -4 6151 5206 2416 267 46 44 chrX 152345610 152346066 -24628074 + L1ME3A LINE L1 3496 3949 -2197 2072 109 7 0 chrX 152346066 152346376 -24627764 + AluSq SINE Alu 1 312 0 2416 267 46 44 chrX 152346376 152347126 -24627014 + L1ME3A LINE L1 3949 4706 -1440 1602 174 64 3 chrX 152347127 152347409 -24626731 + AluJb SINE Alu 1 299 -13 5287 149 13 31 chrX 152347459 152347803 -24626337 + L1MA6 LINE L1 4408 4757 -1534 2226 108 3 0 chrX 152347803 152348100 -24626040 + AluSp SINE Alu 1 298 -15 5287 149 13 31 chrX 152348100 152349202 -24624938 + L1MA6 LINE L1 4757 5827 -464 1593 171 47 0 chrX 152349208 152349501 -24624639 + L1MA6 LINE L1 5988 6300 0 400 281 60 60 chrX 152349509 152349766 -24624374 + L1ME3A LINE L1 4771 5030 -1116 693 186 23 23 chrX 152349766 152349895 -24624245 + FLAM_A SINE Alu 1 129 -4 400 281 60 60 chrX 152349895 152349918 -24624222 + L1ME3A LINE L1 5029 5051 -1095 2221 112 0 7 chrX 152349924 152350229 -24623911 + AluSg SINE Alu 1 303 -7 797 236 103 30 chrX 152350323 152350594 -24623546 - LTR33A LTR ERVL -232 291 1 1521 242 83 25 chrX 152350656 152350714 -24623426 + L1ME3A LINE L1 5128 5181 -989 2131 135 6 0 chrX 152350714 152351025 -24623115 + AluSq SINE Alu 1 313 0 1521 242 83 25 chrX 152351025 152351723 -24622417 + L1ME3A LINE L1 5181 5947 -223 214 218 18 0 chrX 152351744 152351799 -24622341 + (TA)n Simple_repeat Simple_repeat 2 57 0 1060 161 0 0 chrX 152351800 152351955 -24622185 - AluJb SINE Alu -24 288 134 2181 107 7 0 chrX 152351955 152352246 -24621894 - AluSg SINE Alu -17 293 1 757 299 122 35 chrX 152352552 152352980 -24621160 + HAL1 LINE L1 4 468 -2039 2693 248 83 77 chrX 152353161 152353751 -24620389 + HAL1 LINE L1 970 1555 -952 2154 125 0 0 chrX 152353751 152354055 -24620085 + AluSg SINE Alu 1 304 -6 2693 248 83 77 chrX 152354055 152354230 -24619910 + HAL1 LINE L1 1555 1727 -780 3298 43 0 0 chrX 152354230 152354601 -24619539 + L1PA6 LINE L1 5783 6153 -1 2693 248 83 77 chrX 152354601 152354946 -24619194 + HAL1 LINE L1 1727 2068 -439 4047 146 7 3 chrX 152354946 152355549 -24618591 - MER6A DNA MER2_type 0 605 1 2693 248 83 77 chrX 152355549 152355961 -24618179 + HAL1 LINE L1 2068 2504 -3 1665 183 0 3 chrX 152355986 152356275 -24617865 + AluJo SINE Alu 9 296 -16 2344 109 0 0 chrX 152356276 152356589 -24617551 + AluSq SINE Alu 1 313 0 1539 258 91 30 chrX 152356685 152357615 -24616525 + L1ME3A LINE L1 4963 5951 -219 824 160 0 62 chrX 152357654 152357798 -24616342 - FLAM_C SINE Alu -7 136 2 457 195 0 0 chrX 152357889 152357966 -24616174 + MLT2E LTR ERVL 539 615 -13 273 75 0 0 chrX 152358043 152358083 -24616057 + (CA)n Simple_repeat Simple_repeat 2 41 0 2400 224 86 2 chrX 152358162 152358607 -24615533 + L1M4 LINE L1 3674 4181 -1965 1022 37 15 0 chrX 152358607 152358741 -24615399 + (GAAA)n Simple_repeat Simple_repeat 2 137 0 2400 224 86 2 chrX 152358741 152358875 -24615265 + L1M4 LINE L1 4181 4302 -1844 210 384 8 16 chrX 152358915 152359040 -24615100 - MIR SINE MIR -119 143 20 1775 167 0 14 chrX 152359176 152359469 -24614671 + AluJo SINE Alu 1 289 -23 751 326 66 54 chrX 152360453 152361002 -24613138 + L2 LINE L2 2704 3272 0 452 236 246 11 chrX 152361015 152361206 -24612934 - MIR SINE MIR -12 250 15 1492 199 91 31 chrX 152361433 152361819 -24612321 - L2 LINE L2 -660 2654 2246 457 203 157 61 chrX 152361818 152362015 -24612125 + L2 LINE L2 3013 3228 -85 * 1282 164 13 18 chrX 152362030 152362256 -24611884 + MSTB LTR MaLR 4 228 -198 383 130 0 14 chrX 152362256 152362325 -24611815 + (TTC)n Simple_repeat Simple_repeat 1 68 0 1180 148 55 10 chrX 152362361 152362563 -24611577 + MSTB LTR MaLR 222 432 0 268 167 0 0 chrX 152362563 152362611 -24611529 + L2 LINE L2 3266 3313 0 1930 234 90 107 chrX 152362639 152363447 -24610693 + HAL1b LINE L1 169 990 -358 2041 92 4 0 chrX 152363447 152363735 -24610405 - AluSp SINE Alu 0 310 22 1930 234 90 107 chrX 152363735 152363986 -24610154 + HAL1b LINE L1 990 1208 -140 1627 154 103 63 chrX 152363986 152364337 -24609803 - MLT1A1 LTR MaLR 0 365 1 1930 234 90 107 chrX 152364337 152364476 -24609664 + HAL1b LINE L1 1208 1348 0 353 296 86 14 chrX 152364546 152364766 -24609374 + L1MC4a LINE L1 5689 5924 -1884 187 314 63 73 chrX 152365080 152365271 -24608869 - L2 LINE L2 -2908 406 218 776 271 68 4 chrX 152365576 152365812 -24608328 - MIR SINE MIR 0 262 12 636 242 60 0 chrX 152365820 152365969 -24608171 + MER104 DNA Tc2 1 158 -22 1842 188 0 3 chrX 152366355 152366658 -24607482 + AluJb SINE Alu 1 302 -10 2503 116 132 5 chrX 152366918 152367297 -24606843 - MSTA LTR MaLR 0 428 2 588 303 139 89 chrX 152368165 152368706 -24605434 + MLT1K LTR MaLR 21 588 0 592 184 20 132 chrX 152369111 152369272 -24604868 - L1M4 LINE L1 -1729 4417 4240 2095 29 0 8 chrX 152369272 152369515 -24604625 - AluY SINE Alu -13 298 58 592 184 20 132 chrX 152369515 152369527 -24604613 - L1M4 LINE L1 -1906 4240 4228 2467 55 7 3 chrX 152369527 152369834 -24604306 - AluY SINE Alu -3 308 1 592 184 20 132 chrX 152369834 152369909 -24604231 - L1M4 LINE L1 -1918 4228 4196 2024 231 39 6 chrX 152369919 152370455 -24603685 + L1M4 LINE L1 2487 3040 -3106 9745 120 19 23 chrX 152370464 152371959 -24602181 + L1P LINE L1 1 1489 -4657 724 240 78 17 chrX 152372121 152372213 -24601927 - MIR SINE MIR -7 255 170 1829 145 77 31 chrX 152372213 152372537 -24601603 + MER44D DNA MER2_type 1 609 0 724 240 78 17 chrX 152372537 152372623 -24601517 - MIR SINE MIR -92 170 66 294 95 0 0 chrX 152373351 152373393 -24600747 + (TCC)n Simple_repeat Simple_repeat 2 43 0 427 333 44 6 chrX 152373818 152373977 -24600163 - MIR SINE MIR -91 171 7 556 155 0 0 chrX 152374078 152374162 -24599978 - MLT1B LTR MaLR 0 390 307 1341 216 68 61 chrX 152374173 152374567 -24599573 + LTR16A LTR ERVL 54 450 0 992 261 126 45 chrX 152374637 152375082 -24599058 + L2 LINE L2 2833 3313 0 215 152 0 0 chrX 152375129 152375162 -24598978 - L2 LINE L2 -225 3047 3015 22 0 0 0 chrX 152375469 152375491 -24598649 + AT_rich Low_complexity Low_complexity 1 22 0 240 300 50 30 chrX 152376247 152376347 -24597793 + MIR SINE MIR 67 168 -94 1332 272 121 16 chrX 152376853 152377590 -24596550 - L2 LINE L2 0 3313 2522 1114 128 17 17 chrX 152377670 152377849 -24596291 - MSTD LTR MaLR 0 396 218 509 218 8 0 chrX 152377956 152378080 -24596060 + CT-rich Low_complexity Low_complexity 3 127 0 598 215 127 6 chrX 152378342 152378500 -24595640 + MLT1I LTR MaLR 233 409 0 2758 127 43 45 chrX 152378766 152378935 -24595205 + MLT1C LTR MaLR 5 173 -294 1764 178 20 0 chrX 152378935 152379239 -24594901 + AluJb SINE Alu 1 310 -2 2758 127 43 45 chrX 152379239 152379533 -24594607 + MLT1C LTR MaLR 173 467 0 223 304 201 54 chrX 152379946 152380150 -24593990 + L2 LINE L2 2737 2970 -344 714 284 68 75 chrX 152380161 152380630 -24593510 + L2 LINE L2 2848 3313 0 227 292 56 0 chrX 152380638 152380710 -24593430 + L2 LINE L2 3229 3304 -9 579 110 0 11 chrX 152381135 152381226 -24592914 - L1MA7 LINE L1 -4 6287 6198 635 161 34 0 chrX 152381226 152381344 -24592796 + L1MA7 LINE L1 6069 6190 -101 1072 167 136 48 chrX 152382101 152382395 -24591745 + MER33 DNA MER1_type 5 324 0 997 217 73 52 chrX 152382461 152382747 -24591393 - MLT1C LTR MaLR 0 467 176 2217 113 0 46 chrX 152382889 152383216 -24590924 - AluSx SINE Alu 0 312 1 299 245 82 0 chrX 152383800 152383898 -24590242 - L1ME4a LINE L1 -18 6103 5998 2159 99 0 0 chrX 152383899 152384171 -24589969 + AluSc SINE Alu 1 272 -37 344 316 17 11 chrX 152384271 152384445 -24589695 + (CAGAGA)n Simple_repeat Simple_repeat 4 178 0 483 293 17 0 chrX 152384468 152384642 -24589498 + (CAGAGA)n Simple_repeat Simple_repeat 4 180 0 217 257 22 11 chrX 152384763 152384949 -24589191 + (CAGAGA)n Simple_repeat Simple_repeat 1 188 0 507 293 13 24 chrX 152384961 152385594 -24588546 + (CAGAGA)n Simple_repeat Simple_repeat 1 625 0 623 159 0 0 chrX 152385637 152385725 -24588415 + 5S rRNA rRNA 3 90 -31 242 250 10 0 chrX 152385821 152385925 -24588215 + (CAGAGA)n Simple_repeat Simple_repeat 4 108 0 315 324 17 17 chrX 152385951 152386124 -24588016 + (CAGAGA)n Simple_repeat Simple_repeat 4 176 0 416 265 11 7 chrX 152386378 152386658 -24587482 + (CAGAGA)n Simple_repeat Simple_repeat 1 281 0 475 308 12 11 chrX 152386723 152387138 -24587002 + (CAGAGA)n Simple_repeat Simple_repeat 1 415 0 233 339 23 11 chrX 152387175 152387352 -24586788 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 * 256 315 6 11 chrX 152387258 152387439 -24586701 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 215 329 0 25 chrX 152387490 152387651 -24586489 + (CATATA)n Simple_repeat Simple_repeat 6 162 0 * 446 303 11 0 chrX 152387561 152387739 -24586401 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 493 229 11 58 chrX 152387790 152387978 -24586162 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 365 259 5 58 chrX 152387996 152388185 -24585955 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 518 263 37 55 chrX 152388862 152389079 -24585061 + MIR SINE MIR 40 252 -10 311 182 0 45 chrX 152389278 152389299 -24584841 - L1MC4 LINE L1 -1339 6703 6683 2077 174 3 9 chrX 152389299 152389649 -24584491 - MER7A DNA MER2_type 0 346 1 311 182 0 45 chrX 152389649 152389693 -24584447 - L1MC4 LINE L1 -1359 6683 6641 192 77 0 0 chrX 152389728 152389754 -24584386 + (TATATG)n Simple_repeat Simple_repeat 5 30 0 1582 191 146 20 chrX 152389756 152390106 -24584034 - MLT2B1 LTR ERVL -61 459 66 661 178 0 0 chrX 152390106 152390213 -24583927 - AluJo/FRAM SINE Alu -73 239 133 2184 106 0 0 chrX 152390214 152390506 -24583634 - AluSq SINE Alu -21 292 1 21 0 0 0 chrX 152390515 152390536 -24583604 + AT_rich Low_complexity Low_complexity 1 21 0 1970 78 0 11 chrX 152390654 152390922 -24583218 + AluSc SINE Alu 33 297 -12 504 284 69 28 chrX 152391108 152391326 -24582814 - L1ME4a LINE L1 -153 5968 5742 378 262 116 46 chrX 152391327 152391579 -24582561 - MLT1H LTR MaLR 0 549 333 2333 205 10 38 chrX 152391592 152392161 -24581979 - MER77 LTR ERV1 0 605 1 655 229 59 41 chrX 152392163 152392333 -24581807 - MLT1H LTR MaLR -261 288 116 1807 170 3 3 chrX 152392515 152392827 -24581313 - AluJb SINE Alu 0 312 1 1835 143 0 3 chrX 152393197 152393484 -24580656 - AluSx SINE Alu -26 286 1 23 33 0 0 chrX 152393544 152393574 -24580566 + AT_rich Low_complexity Low_complexity 1 30 0 2201 113 7 0 chrX 152393652 152393962 -24580178 - AluSx SINE Alu 0 312 1 550 274 98 30 chrX 152394041 152394232 -24579908 - L1ME4a LINE L1 -2304 5504 5293 2313 81 3 10 chrX 152394232 152394542 -24579598 - AluSp SINE Alu -2 311 4 550 274 98 30 chrX 152394542 152394584 -24579556 - L1ME4a LINE L1 -2515 5293 5255 287 269 0 87 chrX 152394684 152394788 -24579352 - MIR SINE MIR -61 201 107 667 130 0 0 chrX 152394792 152394884 -24579256 + AluSg/x SINE Alu 185 276 -33 934 79 24 18 chrX 152394886 152395050 -24579090 + (GAAA)n Simple_repeat Simple_repeat 2 166 0 231 326 42 32 chrX 152395051 152395146 -24578994 - MIR3 SINE MIR -111 97 2 514 294 12 6 chrX 152395827 152395987 -24578153 + MIR3 SINE MIR 41 201 -7 324 288 0 0 chrX 152396329 152396402 -24577738 + MIR SINE MIR 81 153 -109 2052 135 46 26 chrX 152396404 152396436 -24577704 + L1MB7 LINE L1 5369 5399 -775 1305 128 70 152 chrX 152396436 152396547 -24577593 + AluJb SINE Alu 1 120 -182 261 0 0 0 chrX 152396547 152396576 -24577564 + (CA)n Simple_repeat Simple_repeat 2 30 0 1305 128 70 152 chrX 152396576 152396793 -24577347 + AluJb SINE Alu 120 302 0 2052 135 46 26 chrX 152396793 152397109 -24577031 + L1MB7 LINE L1 5399 5724 -450 1594 133 151 21 chrX 152397110 152397442 -24576698 + THE1C LTR MaLR 1 375 0 10263 125 37 2 chrX 152397442 152398969 -24575171 + THE1C-int LTR MaLR 1 1580 0 1826 145 74 28 chrX 152398969 152399321 -24574819 + THE1C LTR MaLR 1 368 -7 2119 154 51 40 chrX 152399322 152399625 -24574515 + L1MB7 LINE L1 5721 6032 -152 2207 109 0 10 chrX 152399625 152399936 -24574204 - AluSx SINE Alu -4 308 1 2119 154 51 40 chrX 152399936 152400081 -24574059 + L1MB7 LINE L1 6032 6174 -10 234 291 84 64 chrX 152400187 152400329 -24573811 - L1ME3A LINE L1 -2 6151 6002 2403 147 8 5 chrX 152400329 152400717 -24573423 - MLT1B LTR MaLR -1 389 1 234 291 84 64 chrX 152400717 152400777 -24573363 - L1ME3A LINE L1 -151 6002 5945 1653 253 127 19 chrX 152400832 152401792 -24572348 - L1ME3A LINE L1 -208 5945 4880 227 224 35 35 chrX 152402081 152402139 -24572001 - L1ME3A LINE L1 -6058 61 4 2593 228 34 65 chrX 152402177 152402207 -24571933 - L1ME3 LINE L1 -3 6159 6130 1934 119 85 25 chrX 152402207 152402561 -24571579 - THE1C LTR MaLR 0 375 1 2593 228 34 65 chrX 152402561 152402790 -24571350 - L1ME3 LINE L1 -32 6130 5896 1606 157 3 27 chrX 152402790 152403089 -24571051 - AluJb SINE Alu -10 302 11 2593 228 34 65 chrX 152403089 152403111 -24571029 - L1ME3 LINE L1 -266 5896 5875 1598 174 7 3 chrX 152403111 152403405 -24570735 - AluJb SINE Alu -17 295 1 2593 228 34 65 chrX 152403405 152403937 -24570203 - L1ME3 LINE L1 -287 5875 5369 1005 154 31 26 chrX 152404102 152404297 -24569843 - L1MB7 LINE L1 -8 6176 5981 379 274 67 3 chrX 152404308 152404474 -24569666 + L1ME3A LINE L1 5737 5912 -262 1583 192 8 37 chrX 152404482 152404863 -24569277 + L1MA7 LINE L1 5783 6152 -139 758 209 31 11 chrX 152404863 152405054 -24569086 + AluJo SINE Alu 118 312 0 624 149 7 64 chrX 152405056 152405197 -24568943 + L1MA7 LINE L1 6157 6289 -2 23 33 0 0 chrX 152405197 152405227 -24568913 + AT_rich Low_complexity Low_complexity 1 30 0 327 262 0 12 chrX 152405620 152405704 -24568436 + MIR SINE MIR 179 261 -1 2059 127 0 0 chrX 152405805 152406104 -24568036 + AluSg SINE Alu 3 301 -9 775 247 63 113 chrX 152406125 152406506 -24567634 + MLT1E-int LTR MaLR 986 1347 -24 1020 243 64 45 chrX 152406522 152406835 -24567305 + MLT1E LTR MaLR 8 326 -267 223 258 0 0 chrX 152406867 152406933 -24567207 + A-rich Low_complexity Low_complexity 1 66 0 1754 162 3 10 chrX 152406936 152407238 -24566902 + AluJb SINE Alu 1 300 -12 2047 125 3 3 chrX 152407250 152407562 -24566578 + AluSx SINE Alu 1 312 0 525 134 25 8 chrX 152407572 152407595 -24566545 + GA-rich Low_complexity Low_complexity 2 23 -99 2133 73 6 82 chrX 152407595 152407925 -24566215 + AluY SINE Alu 1 305 -6 525 134 25 8 chrX 152407925 152408020 -24566120 + GA-rich Low_complexity Low_complexity 23 122 0 1014 195 87 22 chrX 152408020 152408251 -24565889 + MLT1E LTR MaLR 348 593 0 238 268 72 10 chrX 152408308 152408405 -24565735 + L2 LINE L2 2951 3053 -219 2185 96 7 0 chrX 152408470 152408761 -24565379 - AluSq SINE Alu -20 293 1 247 352 99 28 chrX 152408785 152408927 -24565213 + L2 LINE L2 3104 3255 -17 431 333 0 8 chrX 152408931 152409054 -24565086 + MIR SINE MIR 25 146 -116 24 0 0 0 chrX 152409231 152409255 -24564885 + AT_rich Low_complexity Low_complexity 1 24 0 2270 85 0 3 chrX 152409327 152409633 -24564507 + AluY SINE Alu 1 305 -6 224 268 30 104 chrX 152410326 152410358 -24563782 + L2 LINE L2 2362 2395 -919 1589 139 23 63 chrX 152410358 152410681 -24563459 - AluJo SINE Alu 0 312 5 224 268 30 104 chrX 152410681 152410750 -24563390 + L2 LINE L2 2395 2449 -865 2378 62 3 3 chrX 152410750 152411055 -24563085 - AluSp SINE Alu -8 305 1 224 268 30 104 chrX 152411055 152411116 -24563024 + L2 LINE L2 2449 2513 -801 945 147 26 99 chrX 152411187 152411459 -24562681 - L1MA9 LINE L1 -32 6280 6029 707 108 0 20 chrX 152411446 152411548 -24562592 + L1M2 LINE L1 5433 5532 -759 * 2905 160 69 38 chrX 152411547 152411903 -24562237 + L1MA9 LINE L1 5430 5814 -498 2192 90 0 7 chrX 152411903 152412192 -24561948 + AluSx SINE Alu 6 292 -20 2905 160 69 38 chrX 152412192 152412442 -24561698 + L1MA9 LINE L1 5814 6055 -257 225 351 18 9 chrX 152412445 152412556 -24561584 + L2 LINE L2 2532 2643 -671 498 242 134 13 chrX 152412558 152412715 -24561425 + MLT1J2 LTR MaLR 3 178 -272 554 290 71 6 chrX 152412744 152412913 -24561227 + MLT1J2 LTR MaLR 263 442 -8 348 223 10 155 chrX 152412916 152413122 -24561018 + L2 LINE L2 2640 2815 -499 293 278 59 27 chrX 152413172 152413321 -24560819 - L2 LINE L2 -2 3311 2577 186 43 0 0 chrX 152413465 152413488 -24560652 + (GAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chrX 152413494 152413516 -24560624 + AT_rich Low_complexity Low_complexity 1 22 0 2198 115 0 0 chrX 152413532 152413844 -24560296 + AluSx SINE Alu 1 312 0 506 266 33 70 chrX 152413909 152414150 -24559990 - L2 LINE L2 -835 2479 2248 1593 176 7 3 chrX 152414214 152414504 -24559636 + AluJb SINE Alu 18 308 -4 221 158 26 0 chrX 152414546 152414584 -24559556 + CT-rich Low_complexity Low_complexity 3 41 0 3165 151 19 87 chrX 152414694 152414743 -24559397 - L1MB8 LINE L1 -22 6156 6105 1955 122 7 0 chrX 152414743 152415039 -24559101 + AluSx SINE Alu 1 298 -14 2134 111 0 3 chrX 152415042 152415340 -24558800 + AluSx SINE Alu 1 297 -15 3165 151 19 87 chrX 152415340 152415499 -24558641 - L1MB8 LINE L1 -75 6103 5935 2334 72 0 0 chrX 152415499 152415790 -24558350 - AluSc SINE Alu -18 291 1 3165 151 19 87 chrX 152415790 152416046 -24558094 - L1MB8 LINE L1 -243 5935 5663 2362 61 3 0 chrX 152416046 152416342 -24557798 + AluY SINE Alu 1 297 -14 3165 151 19 87 chrX 152416342 152416354 -24557786 - L1MB8 LINE L1 -515 5663 5652 2007 97 4 0 chrX 152416354 152416621 -24557519 + AluSx SINE Alu 1 268 -44 3165 151 19 87 chrX 152416621 152416865 -24557275 - L1MB8 LINE L1 -526 5652 5478 4835 176 123 40 chrX 152417606 152418336 -24555804 - L1MB8 LINE L1 -704 5474 4806 1895 114 6 62 chrX 152418336 152418660 -24555480 - AluSx SINE Alu -6 306 1 4835 176 123 40 chrX 152418660 152418681 -24555459 - L1MB8 LINE L1 -1372 4806 4788 1547 174 27 17 chrX 152418681 152418975 -24555165 + AluJb SINE Alu 1 297 -15 4835 176 123 40 chrX 152418975 152419733 -24554407 - L1MB8 LINE L1 -1390 4788 3829 357 131 0 0 chrX 152423151 152423212 -24550928 + (TCC)n Simple_repeat Simple_repeat 3 63 0 2036 77 15 11 chrX 152424125 152424397 -24549743 + AluSp SINE Alu 14 286 -27 188 267 0 33 chrX 152424407 152424527 -24549613 + (TATATG)n Simple_repeat Simple_repeat 1 116 0 22 0 0 0 chrX 152426329 152426351 -24547789 + GC_rich Low_complexity Low_complexity 1 22 0 283 233 11 11 chrX 152426507 152426597 -24547543 + (CGG)n Simple_repeat Simple_repeat 3 92 0 28 0 0 0 chrX 152426628 152426656 -24547484 + GC_rich Low_complexity Low_complexity 1 28 0 58 41 0 10 chrX 152426671 152426708 -24547432 + GC_rich Low_complexity Low_complexity 1 37 -59 231 36 0 0 chrX 152426708 152426736 -24547404 + (CCCCG)n Simple_repeat Simple_repeat 1 28 0 58 41 0 10 chrX 152426736 152426795 -24547345 + GC_rich Low_complexity Low_complexity 37 96 0 74 76 0 27 chrX 152426847 152427071 -24547069 + GC_rich Low_complexity Low_complexity 1 218 0 28 71 0 0 chrX 152427160 152427216 -24546924 + GC_rich Low_complexity Low_complexity 1 56 0 215 203 0 47 chrX 152427499 152427563 -24546577 + G-rich Low_complexity Low_complexity 3 63 0 333 0 0 0 chrX 152427604 152427641 -24546499 + (CGG)n Simple_repeat Simple_repeat 3 39 0 222 341 24 24 chrX 152428552 152428575 -24545565 + MIR SINE MIR 23 45 -163 240 35 0 0 chrX 152428575 152428604 -24545536 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 222 341 24 24 chrX 152428604 152428665 -24545475 + MIR SINE MIR 44 107 -101 413 269 54 75 chrX 152428679 152428865 -24545275 + MER20B DNA MER1_type 1 182 -601 1922 100 64 7 chrX 152429284 152429564 -24544576 + AluSg SINE Alu 1 296 -14 356 282 141 25 chrX 152429626 152429789 -24544351 - L3 LINE CR1 -6 1571 1390 211 303 55 46 chrX 152430807 152430916 -24543224 + MIR SINE MIR 22 131 -77 2292 93 0 0 chrX 152431565 152431876 -24542264 + AluSx SINE Alu 1 311 -1 2165 117 3 0 chrX 152431887 152432194 -24541946 + AluSx SINE Alu 1 308 -4 760 103 9 0 chrX 152432198 152432305 -24541835 + FLAM_C SINE Alu 17 124 -19 635 179 0 65 chrX 152432381 152432504 -24541636 + FLAM_A SINE Alu 1 115 -27 1416 170 42 48 chrX 152432525 152432837 -24541303 + AluSx SINE Alu 3 312 0 22 35 0 0 chrX 152432853 152432882 -24541258 + AT_rich Low_complexity Low_complexity 1 29 0 205 383 106 0 chrX 152433235 152433376 -24540764 - MIR3 SINE MIR -27 181 26 1208 93 0 11 chrX 152433632 152433814 -24540326 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2328 58 0 0 chrX 152433832 152434127 -24540013 - AluY SINE Alu -16 295 1 2135 96 0 13 chrX 152434129 152434294 -24539846 - AluSq SINE Alu -15 298 137 2166 50 69 0 chrX 152434294 152434571 -24539569 - AluSg SINE Alu -14 296 1 2135 96 0 13 chrX 152434571 152434707 -24539433 - AluSq SINE Alu -176 137 1 2095 126 0 3 chrX 152435546 152435855 -24538285 - AluSp SINE Alu -5 308 1 2190 102 24 3 chrX 152435855 152436149 -24537991 - AluSp SINE Alu -13 300 1 1755 92 11 61 chrX 152436160 152436421 -24537719 - AluSg SINE Alu -7 303 56 2374 92 7 0 chrX 152436483 152436789 -24537351 - AluSx SINE Alu 0 312 5 2424 80 13 0 chrX 152436860 152437159 -24536981 - AluSx SINE Alu -8 304 2 410 295 126 49 chrX 152437611 152438041 -24536099 + L2 LINE L2 2851 3313 0 2277 121 0 6 chrX 152438589 152438902 -24535238 + AluSx SINE Alu 1 311 -1 2378 91 7 0 chrX 152438914 152439212 -24534928 + AluSp SINE Alu 1 300 -13 870 153 80 0 chrX 152439212 152439362 -24534778 - AluJo SINE Alu -30 282 121 2567 102 13 0 chrX 152439383 152439767 -24534373 - L1PA13 LINE L1 0 6163 5775 2587 74 0 0 chrX 152439767 152440078 -24534062 - AluY SINE Alu 0 311 1 244 330 168 12 chrX 152440085 152440258 -24533882 - L2 LINE L2 -572 2742 2543 2370 80 0 13 chrX 152440419 152440719 -24533421 - AluSg SINE Alu -14 296 1 2225 109 3 6 chrX 152440721 152441034 -24533106 - AluSx SINE Alu 0 312 1 2489 77 0 10 chrX 152441036 152441347 -24532793 - AluSc SINE Alu -1 308 1 209 287 31 69 chrX 152441383 152441680 -24532460 + L2 LINE L2 2917 3267 -5 614 237 49 103 chrX 152442095 152442166 -24531974 + MIR SINE MIR 48 121 -141 225 0 0 0 chrX 152442166 152442191 -24531949 + (TTC)n Simple_repeat Simple_repeat 2 26 0 614 237 49 103 chrX 152442191 152442207 -24531933 + MIR SINE MIR 121 136 -126 2429 79 0 0 chrX 152442207 152442499 -24531641 - AluSx SINE Alu -20 292 1 614 237 49 103 chrX 152442499 152442634 -24531506 + MIR SINE MIR 136 259 -3 244 231 37 93 chrX 152442975 152443083 -24531057 + L2 LINE L2 3160 3261 -11 258 350 34 51 chrX 152443239 152443416 -24530724 + MIR3 SINE MIR 16 189 -19 307 243 37 110 chrX 152443417 152443553 -24530587 + L2 LINE L2 3188 3313 0 903 159 51 51 chrX 152443601 152443777 -24530363 - FRAM SINE Alu -6 170 1 717 176 0 0 chrX 152444294 152444419 -24529721 - FRAM SINE Alu -9 167 43 589 238 0 7 chrX 152444915 152445058 -24529082 - FLAM_C SINE Alu -1 142 1 2456 90 0 0 chrX 152445101 152445400 -24528740 + AluSq SINE Alu 1 299 -14 1902 163 10 16 chrX 152445452 152445758 -24528382 + AluJo SINE Alu 1 304 -8 2377 92 0 0 chrX 152446427 152446719 -24527421 + AluSc SINE Alu 3 294 -15 640 254 36 10 chrX 152446968 152447161 -24526979 - MIR3 SINE MIR -8 200 3 899 141 0 7 chrX 152447619 152447754 -24526386 - AluJo SINE Alu -178 134 1 1329 165 9 26 chrX 152448015 152448245 -24525895 + AluJo SINE Alu 85 310 -2 747 284 25 13 chrX 152448248 152448484 -24525656 + MIR SINE MIR 20 258 -4 2220 84 21 3 chrX 152448511 152448795 -24525345 - AluSg SINE Alu -21 289 1 252 149 0 0 chrX 152448807 152448854 -24525286 + (T)n Simple_repeat Simple_repeat 1 47 0 1942 151 11 0 chrX 152449272 152449571 -24524569 - AluSx SINE Alu 0 302 1 353 81 16 0 chrX 152449707 152449769 -24524371 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2077 118 4 4 chrX 152449771 152450050 -24524090 - AluSg SINE Alu -31 279 1 312 234 26 13 chrX 152450150 152450227 -24523913 + MLT1D LTR MaLR 1 78 -427 1524 241 19 32 chrX 152450296 152450727 -24523413 + MLT1D LTR MaLR 81 505 0 1833 155 14 17 chrX 152450762 152451074 -24523066 - AluJb SINE Alu 0 312 1 204 294 51 11 chrX 152451260 152451352 -24522788 - MIR3 SINE MIR -46 162 65 420 20 0 0 chrX 152451991 152452040 -24522100 + (TTCC)n Simple_repeat Simple_repeat 3 51 0 2252 87 7 0 chrX 152452040 152452316 -24521824 - AluSx SINE Alu -25 287 10 1029 148 4 109 chrX 152452854 152453049 -24521091 - AluJb SINE Alu 0 312 165 2130 119 27 0 chrX 152453049 152453343 -24520797 - AluSx SINE Alu -10 302 1 1029 148 4 109 chrX 152453343 152453417 -24520723 - AluJb SINE Alu -147 165 85 252 0 0 0 chrX 152453509 152453537 -24520603 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 360 0 0 0 chrX 152453716 152453756 -24520384 + (TG)n Simple_repeat Simple_repeat 2 41 0 709 181 34 0 chrX 152453980 152454129 -24520011 + MLT1D LTR MaLR 1 154 -351 1769 162 135 19 chrX 152454148 152454562 -24519578 - MLT1C LTR MaLR 0 467 6 1029 234 36 43 chrX 152454573 152454902 -24519238 + MLT1D LTR MaLR 173 499 -6 556 306 55 46 chrX 152454929 152455446 -24518694 - L1ME LINE L1 -512 5654 5136 518 133 144 0 chrX 152455452 152455542 -24518598 + U6 snRNA snRNA 1 103 -4 419 52 17 0 chrX 152455641 152455699 -24518441 + (TG)n Simple_repeat Simple_repeat 1 59 0 698 274 11 5 chrX 152455801 152455987 -24518153 - MER5A DNA MER1_type -1 188 2 300 339 31 0 chrX 152456106 152456236 -24517904 - MIR3 SINE MIR -9 199 66 843 114 9 0 chrX 152456241 152456383 -24517757 + FLAM_C SINE Alu 7 149 0 359 329 12 12 chrX 152457072 152457236 -24516904 + GA-rich Low_complexity Low_complexity 1 164 0 2019 157 0 3 chrX 152457565 152457871 -24516269 - AluJo SINE Alu -7 305 1 262 203 0 43 chrX 152458390 152458459 -24515681 - L2 LINE L2 -1 3312 3247 3439 159 16 31 chrX 152459070 152459419 -24514721 + L1MB5 LINE L1 5488 5824 -350 1636 156 12 94 chrX 152459419 152459539 -24514601 + AluJo SINE Alu 3 131 -181 2282 104 0 10 chrX 152459539 152459838 -24514302 - AluSq SINE Alu -17 296 1 1636 156 12 94 chrX 152459838 152460045 -24514095 + AluJo SINE Alu 131 303 -9 3439 159 16 31 chrX 152460045 152460379 -24513761 + L1MB5 LINE L1 5824 6161 -13 186 71 0 0 chrX 152460382 152460410 -24513730 + (A)n Simple_repeat Simple_repeat 1 28 0 261 309 45 36 chrX 152460570 152460680 -24513460 + L2 LINE L2 3202 3312 -1 413 213 25 10 chrX 152460692 152460806 -24513334 - MIR3 SINE MIR -53 155 33 1512 170 28 48 chrX 152461563 152461971 -24512169 + AluJo SINE Alu 1 402 0 2160 134 3 10 chrX 152462440 152462746 -24511394 - AluJb SINE Alu -8 304 1 205 183 111 16 chrX 152462864 152462935 -24511205 - MIR SINE MIR -63 145 77 1250 236 133 31 chrX 152463209 152463624 -24510516 + MLT1D LTR MaLR 40 496 -9 557 181 0 0 chrX 152464125 152464219 -24509921 + AluJ/FLAM SINE Alu 2 95 -217 468 0 0 0 chrX 152464267 152464319 -24509821 + (CA)n Simple_repeat Simple_repeat 2 53 0 2042 139 6 19 chrX 152464672 152464988 -24509152 - AluSq SINE Alu -1 312 1 503 211 10 0 chrX 152465006 152465110 -24509030 - MIR SINE MIR -99 163 59 522 371 55 0 chrX 152465629 152465866 -24508274 + MIR SINE MIR 13 262 0 1887 188 92 38 chrX 152465891 152466370 -24507770 + MLT1D LTR MaLR 1 505 0 922 193 6 0 chrX 152466506 152466682 -24507458 + MER5A DNA MER1_type 13 189 0 295 262 54 119 chrX 152466820 152466880 -24507260 + L2 LINE L2 3116 3178 -94 2257 92 3 0 chrX 152466880 152467205 -24506935 - AluSg SINE Alu 0 326 1 295 262 54 119 chrX 152467205 152467311 -24506829 + L2 LINE L2 3178 3272 0 277 229 33 0 chrX 152467340 152467401 -24506739 - L1MC5 LINE L1 -580 7381 7319 376 257 21 21 chrX 152470116 152470256 -24503884 + L1MC4a LINE L1 6444 6583 -1225 900 174 0 139 chrX 152470256 152470352 -24503788 - MLT1A1 LTR MaLR -143 222 114 2455 100 0 0 chrX 152470352 152470662 -24503478 - AluSg SINE Alu 0 310 1 900 174 0 139 chrX 152470662 152470823 -24503317 - MLT1A1 LTR MaLR -251 114 1 4916 177 60 101 chrX 152470826 152471843 -24502297 + L1MC4 LINE L1 6671 7727 -268 228 35 0 0 chrX 152471843 152471872 -24502268 + (ATG)n Simple_repeat Simple_repeat 1 29 0 4916 177 60 101 chrX 152471872 152472216 -24501924 + L1MC4 LINE L1 7727 7913 -82 1726 164 7 28 chrX 152472216 152472533 -24501607 - AluJo SINE Alu 0 311 1 4916 177 60 101 chrX 152472533 152472613 -24501527 + L1MC4 LINE L1 7913 7995 0 225 0 0 0 chrX 152472725 152472750 -24501390 + (TTA)n Simple_repeat Simple_repeat 1 25 0 746 238 0 0 chrX 152472751 152472902 -24501238 - FAM SINE Alu -23 162 12 2398 179 73 17 chrX 152473189 152473598 -24500542 + MLT1D LTR MaLR 3 444 -61 1859 171 0 19 chrX 152473598 152473913 -24500227 + AluJo SINE Alu 1 309 -3 2398 179 73 17 chrX 152473913 152473979 -24500161 + MLT1D LTR MaLR 444 505 0 197 204 61 106 chrX 152473982 152474114 -24500026 + L2 LINE L2 3139 3264 -8 545 195 86 0 chrX 152474624 152474752 -24499388 + L1MB7 LINE L1 6037 6175 -9 189 238 48 32 chrX 152474942 152475005 -24499135 - L2 LINE L2 -84 3188 3125 1253 218 20 14 chrX 152475569 152475863 -24498277 - L1MB8 LINE L1 -2 6176 5881 633 324 110 6 chrX 152476446 152476764 -24497376 - L3 LINE CR1 -15 1562 1212 1956 189 6 4 chrX 152476863 152477215 -24496925 - MLT2B1 LTR ERVL -108 446 1 1734 177 0 47 chrX 152477215 152477576 -24496564 - L1MB8 LINE L1 -1026 5120 4777 2300 127 0 0 chrX 152477671 152477978 -24496162 - AluSx SINE Alu -5 307 1 741 158 33 54 chrX 152477984 152478168 -24495972 - L1M4 LINE L1 -983 5163 4984 1697 167 58 0 chrX 152478371 152478647 -24495493 - AluJo SINE Alu -10 302 11 2202 127 0 7 chrX 152478668 152478967 -24495173 - AluSx SINE Alu -15 297 1 392 325 38 6 chrX 152478972 152479132 -24495008 - MIR3 SINE MIR -41 167 3 314 370 47 24 chrX 152479324 152479535 -24494605 + L3b LINE CR1 1164 1379 -204 1890 162 0 17 chrX 152479807 152480104 -24494036 - AluJb SINE Alu -1 311 20 2378 103 0 3 chrX 152480189 152480501 -24493639 + AluSq SINE Alu 1 311 -2 2186 166 95 4 chrX 152480521 152480738 -24493402 + MLT1D LTR MaLR 1 197 -308 2569 63 0 0 chrX 152480738 152481037 -24493103 + AluY SINE Alu 1 299 -12 2186 166 95 4 chrX 152481037 152481187 -24492953 + MLT1D LTR MaLR 197 332 -173 1923 109 25 3 chrX 152481187 152481472 -24492668 + AluSg SINE Alu 1 291 -19 2186 166 95 4 chrX 152481472 152481566 -24492574 + MLT1D LTR MaLR 332 505 0 687 142 0 0 chrX 152481879 152481999 -24492141 - L1MB8 LINE L1 0 6178 6059 1941 174 0 6 chrX 152482001 152482312 -24491828 - AluJo SINE Alu -3 309 1 859 190 23 6 chrX 152482437 152482611 -24491529 + MLT1C LTR MaLR 1 177 -290 828 136 17 0 chrX 152482623 152482741 -24491399 + FLAM_C SINE Alu 12 131 -12 780 201 31 1 chrX 152482765 152482928 -24491212 + MLT1C LTR MaLR 186 369 -124 966 231 120 32 chrX 152482960 152483032 -24491108 - MER2 DNA MER2_type 0 344 280 2323 97 0 34 chrX 152483032 152483317 -24490823 + AluSq SINE Alu 1 275 -38 285 29 0 0 chrX 152483317 152483351 -24490789 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 2323 97 0 34 chrX 152483351 152483386 -24490754 + AluSq SINE Alu 275 310 -3 966 231 120 32 chrX 152483386 152483532 -24490608 - MER2 DNA MER2_type -64 280 148 1769 172 41 0 chrX 152483532 152483822 -24490318 + AluJb SINE Alu 1 302 -10 966 231 120 32 chrX 152483822 152483918 -24490222 - MER2 DNA MER2_type -196 148 1 1172 201 43 43 chrX 152484742 152485065 -24489075 - MLT1D LTR MaLR -2 503 181 2276 80 7 0 chrX 152485105 152485381 -24488759 - AluSg SINE Alu -32 278 1 1027 190 15 10 chrX 152485381 152485576 -24488564 - MLT1D LTR MaLR -309 196 1 859 134 0 37 chrX 152486281 152486415 -24487725 - FLAM_C SINE Alu -14 129 1 408 350 45 50 chrX 152486535 152486706 -24487434 - MIR SINE MIR -22 240 69 2377 193 49 12 chrX 152486706 152487192 -24486948 + MLT1D LTR MaLR 1 504 -1 408 350 45 50 chrX 152487192 152487240 -24486900 - MIR SINE MIR -193 69 22 1527 177 30 0 chrX 152487610 152487876 -24486264 - AluJo SINE Alu -25 287 14 558 98 0 0 chrX 152487889 152487971 -24486169 + (TA)n Simple_repeat Simple_repeat 2 83 0 288 0 0 0 chrX 152487971 152488003 -24486137 + (TG)n Simple_repeat Simple_repeat 2 33 0 320 80 80 0 chrX 152488006 152488056 -24486084 - AluJo SINE Alu -7 295 242 960 135 0 61 chrX 152488056 152488219 -24485921 - AluJo SINE Alu -159 153 1 188 61 61 0 chrX 152488300 152488333 -24485807 + T-rich Low_complexity Low_complexity 2 36 0 2224 95 0 0 chrX 152488348 152488644 -24485496 + AluSc SINE Alu 1 296 -13 1577 165 0 34 chrX 152488643 152488934 -24485206 - AluJb SINE Alu -31 281 1 * 1619 172 0 40 chrX 152488939 152489075 -24485065 + L1MB3 LINE L1 5851 5991 -192 1904 118 0 28 chrX 152489075 152489386 -24484754 + AluSx SINE Alu 3 305 0 1619 172 0 40 chrX 152489386 152489574 -24484566 + L1MB3 LINE L1 5991 6163 -20 2917 144 20 40 chrX 152489609 152490158 -24483982 - L1MB7 LINE L1 -47 6137 5600 398 248 96 8 chrX 152491356 152491481 -24482659 + MIR3 SINE MIR 36 171 -37 2123 109 0 13 chrX 152491586 152491899 -24482241 - AluSg SINE Alu 0 310 2 306 21 43 0 chrX 152491939 152491986 -24482154 + L1PA3 LINE L1 6103 6151 -4 364 281 63 124 chrX 152492467 152492563 -24481577 - L3 LINE CR1 -119 1458 1358 1538 177 3 37 chrX 152492563 152492863 -24481277 + AluJo SINE Alu 4 293 -19 364 281 63 124 chrX 152492863 152493068 -24481072 - L3 LINE CR1 -219 1358 1194 2126 135 0 0 chrX 152493068 152493380 -24480760 + AluSx SINE Alu 1 312 0 364 281 63 124 chrX 152493380 152493554 -24480586 - L3 LINE CR1 -383 1194 1011 2857 123 24 0 chrX 152493634 152494050 -24480090 - MSTC LTR MaLR -2 426 1 793 217 159 10 chrX 152494144 152494351 -24479789 - MIR SINE MIR -15 247 10 968 196 42 33 chrX 152494941 152495086 -24479054 + MIR SINE MIR 14 163 -99 1722 176 44 75 chrX 152495086 152495410 -24478730 - MLT1A2 LTR MaLR 0 374 62 2161 110 0 7 chrX 152495410 152495720 -24478420 - AluSg SINE Alu 0 310 3 1722 176 44 75 chrX 152495720 152495781 -24478359 - MLT1A2 LTR MaLR -312 62 1 968 196 42 33 chrX 152495781 152495849 -24478291 + MIR SINE MIR 163 229 -33 3851 149 32 40 chrX 152495851 152495894 -24478246 - L1MB7 LINE L1 -13 6171 6129 198 0 0 0 chrX 152495894 152495916 -24478224 + (TA)n Simple_repeat Simple_repeat 2 23 0 1742 157 0 17 chrX 152495916 152496216 -24477924 - AluJo SINE Alu -17 295 1 3851 149 32 40 chrX 152496216 152496682 -24477458 - L1MB7 LINE L1 -54 6130 5666 1504 151 94 47 chrX 152496682 152496942 -24477198 - AluJb SINE Alu 0 312 35 2060 113 3 3 chrX 152496942 152497242 -24476898 + AluSx SINE Alu 1 300 -12 1504 151 94 47 chrX 152497242 152497279 -24476861 - AluJb SINE Alu -277 35 1 3851 149 32 40 chrX 152497279 152497512 -24476628 - L1MB7 LINE L1 -518 5666 5433 268 318 84 42 chrX 152497821 152498035 -24476105 - L2 LINE L2 -535 2779 2557 1003 116 7 0 chrX 152499084 152499284 -24474856 + FRAM SINE Alu 1 200 0 1370 154 143 0 chrX 152499287 152499546 -24474594 + AluJb SINE Alu 1 296 -16 4494 154 50 25 chrX 152499897 152500582 -24473558 - L1MB4 LINE L1 0 6180 5469 1882 133 10 10 chrX 152500582 152500890 -24473250 + AluSq SINE Alu 1 308 -5 4494 154 50 25 chrX 152500890 152501050 -24473090 - L1MB4 LINE L1 -711 5469 5314 913 120 0 0 chrX 152501050 152501175 -24472965 - FLAM_C SINE Alu -18 125 1 498 199 134 16 chrX 152501175 152501361 -24472779 - L1MB4 LINE L1 -818 5328 5121 1472 194 0 25 chrX 152501377 152501494 -24472646 - AluJo SINE Alu -31 281 163 2373 162 49 2 chrX 152501494 152501901 -24472239 + MSTB LTR MaLR 1 426 0 1472 194 0 25 chrX 152501901 152502066 -24472074 - AluJo SINE Alu -149 163 6 833 237 12 20 chrX 152502071 152502324 -24471816 - L1M4 LINE L1 -960 5186 4936 215 211 0 0 chrX 152502446 152502484 -24471656 + MIR SINE MIR 114 151 -111 1391 180 213 26 chrX 152502497 152502886 -24471254 + MLT1C LTR MaLR 6 467 0 2116 112 0 0 chrX 152502922 152503209 -24470931 - AluSx SINE Alu -25 287 1 286 313 80 33 chrX 152503425 152503625 -24470515 + MIR SINE MIR 19 221 -41 351 250 28 37 chrX 152503633 152503741 -24470399 - MIR3 SINE MIR -23 185 79 486 212 18 9 chrX 152503869 152503982 -24470158 - L2 LINE L2 -1274 2040 1927 1283 206 95 49 chrX 152503988 152504161 -24469979 - MER58B DNA MER1_type -2080 340 176 1560 163 4 0 chrX 152504161 152504431 -24469709 - AluJo SINE Alu -3 309 39 1283 206 95 49 chrX 152504431 152504582 -24469558 - MER58B DNA MER1_type -2244 176 1 258 359 10 19 chrX 152504587 152504690 -24469450 + MER5B DNA MER1_type 43 144 -34 3069 151 28 11 chrX 152504690 152505232 -24468908 + L1MB5 LINE L1 5621 6171 -3 186 304 0 0 chrX 152505248 152505294 -24468846 - MER5B DNA MER1_type -129 49 4 775 218 189 75 chrX 152505523 152506019 -24468121 - L2 LINE L2 -419 2895 2343 184 306 0 61 chrX 152507676 152507774 -24466366 + L2 LINE L2 2720 2811 -503 461 198 0 0 chrX 152508792 152508873 -24465267 - U3 snRNA snRNA -136 81 1 32 0 0 0 chrX 152508927 152508959 -24465181 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chrX 152509424 152509453 -24464687 + AT_rich Low_complexity Low_complexity 1 29 0 1500 215 61 0 chrX 152509943 152510255 -24463885 - MER58B DNA MER1_type 0 341 11 196 280 80 0 chrX 152510714 152510764 -24463376 - MIR SINE MIR -196 66 13 239 307 80 0 chrX 152510884 152510972 -24463168 + MIR SINE MIR 165 259 -3 30 0 0 0 chrX 152512259 152512289 -24461851 + GC_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chrX 152512476 152512517 -24461623 + GC_rich Low_complexity Low_complexity 1 41 0 201 328 26 63 chrX 152512812 152513001 -24461139 + MER5A DNA MER1_type 1 182 -7 582 207 125 0 chrX 152513075 152513235 -24460905 + MER5A DNA MER1_type 4 186 -3 270 0 0 0 chrX 152513436 152513466 -24460674 + (CA)n Simple_repeat Simple_repeat 2 31 0 508 193 145 21 chrX 152513632 152513777 -24460363 - L2 LINE L2 -39 3274 3112 559 232 29 14 chrX 152514090 152514228 -24459912 - MIR SINE MIR -119 143 4 279 298 317 0 chrX 152514372 152514533 -24459607 - MIR SINE MIR -6 256 45 31 36 0 18 chrX 152514552 152514588 -24459552 + AT_rich Low_complexity Low_complexity 1 37 -18 2259 73 0 0 chrX 152514588 152514875 -24459265 - AluSg SINE Alu -23 287 1 31 36 0 18 chrX 152514875 152514894 -24459246 + AT_rich Low_complexity Low_complexity 37 55 0 2222 96 3 0 chrX 152514946 152515247 -24458893 - AluY SINE Alu -9 302 1 231 228 241 0 chrX 152515923 152516002 -24458138 - MIR SINE MIR -118 144 47 2064 132 0 3 chrX 152516104 152516390 -24457750 + AluJb SINE Alu 1 287 -25 261 0 0 0 chrX 152516390 152516419 -24457721 + (CA)n Simple_repeat Simple_repeat 2 30 0 2064 132 0 3 chrX 152516419 152516442 -24457698 + AluJb SINE Alu 287 309 -3 732 250 0 6 chrX 152516539 152516699 -24457441 + MIR SINE MIR 80 238 -24 1323 149 11 34 chrX 152516752 152516975 -24457165 + L1MB5 LINE L1 5918 6136 -38 2124 112 0 0 chrX 152516975 152517270 -24456870 + AluSx SINE Alu 1 295 -17 1323 149 11 34 chrX 152517270 152517308 -24456832 + L1MB5 LINE L1 6136 6173 -1 271 96 136 0 chrX 152517318 152517376 -24456764 + L1MB7 LINE L1 6108 6178 0 1847 90 108 7 chrX 152517872 152518151 -24455989 - AluSq SINE Alu -6 307 1 2590 45 0 0 chrX 152518356 152518666 -24455474 - AluY SINE Alu -1 310 1 2157 97 0 28 chrX 152518740 152519061 -24455079 - AluSp SINE Alu -1 312 1 1911 210 33 55 chrX 152519297 152519811 -24454329 + MLT1D LTR MaLR 1 503 -2 2243 106 0 0 chrX 152520482 152520794 -24453346 - AluSq SINE Alu -1 312 1 2329 29 7 4 chrX 152520804 152521120 -24453020 - AluY SINE Alu 0 317 1 455 97 0 0 chrX 152521120 152521182 -24452958 - MER41A LTR ERV1 -95 459 398 234 197 28 99 chrX 152521551 152521622 -24452518 + MER119 DNA MER1_type 489 554 -29 1380 242 156 6 chrX 152521975 152522335 -24451805 - MLT1G LTR MaLR -1 589 176 2040 175 35 0 chrX 152522362 152522816 -24451324 - L1MB3 LINE L1 -7 6176 5638 571 259 42 12 chrX 152522818 152522984 -24451156 - MLT1G LTR MaLR -419 171 1 191 239 90 0 chrX 152523230 152523297 -24450843 + MIR3 SINE MIR 124 196 -12 386 19 0 19 chrX 152523489 152523541 -24450599 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1979 117 0 0 chrX 152523544 152523827 -24450313 - AluSq SINE Alu -30 283 1 1304 196 94 4 chrX 152523831 152524106 -24450034 - AluJo SINE Alu -12 300 1 1012 171 8 81 chrX 152524134 152524368 -24449772 - MER20 DNA MER1_type 0 219 3 1166 131 123 156 chrX 152524385 152524744 -24449396 - MER7A DNA MER2_type 0 346 2 566 207 61 30 chrX 152525141 152525339 -24448801 + L1ME LINE L1 5296 5499 -663 309 276 109 45 chrX 152525346 152525502 -24448638 - L1ME4a LINE L1 -11 6110 5945 236 53 26 0 chrX 152525584 152525622 -24448518 + (TTG)n Simple_repeat Simple_repeat 2 40 0 421 203 13 0 chrX 152525622 152525701 -24448439 - FLAM SINE Alu -19 124 45 1036 116 7 0 chrX 152525923 152526078 -24448062 - L1MB5 LINE L1 -101 6073 5918 732 250 0 6 chrX 152526131 152526291 -24447849 - MIR SINE MIR -24 238 80 2027 142 0 3 chrX 152526388 152526411 -24447729 - AluJb SINE Alu -3 309 287 279 0 0 0 chrX 152526411 152526442 -24447698 + (TG)n Simple_repeat Simple_repeat 2 32 0 2027 142 0 3 chrX 152526442 152526728 -24447412 - AluJb SINE Alu -25 287 1 1835 143 0 3 chrX 152527098 152527385 -24446755 - AluSx SINE Alu -26 286 1 23 33 0 0 chrX 152527445 152527475 -24446665 + AT_rich Low_complexity Low_complexity 1 30 0 2247 107 7 0 chrX 152527553 152527863 -24446277 - AluSx SINE Alu 0 312 1 479 305 89 37 chrX 152527867 152528113 -24446027 - L1MB3 LINE L1 -583 5581 5323 826 147 0 15 chrX 152528314 152528450 -24445690 - AluJo SINE Alu -178 134 1 1210 165 9 26 chrX 152528710 152528940 -24445200 + AluJo SINE Alu 85 310 -2 790 284 25 13 chrX 152528943 152529179 -24444961 + MIR SINE MIR 20 258 -4 2071 84 21 3 chrX 152529206 152529490 -24444650 - AluSg SINE Alu -21 289 1 252 149 0 0 chrX 152529502 152529549 -24444591 + (T)n Simple_repeat Simple_repeat 1 47 0 1794 151 11 0 chrX 152529967 152530266 -24443874 - AluSx SINE Alu 0 302 1 353 81 16 0 chrX 152530402 152530464 -24443676 + (TTTG)n Simple_repeat Simple_repeat 2 64 0 2096 69 4 7 chrX 152530466 152530743 -24443397 - AluSc SINE Alu -31 278 3 259 240 10 52 chrX 152530960 152531056 -24443084 + L1ME LINE L1 5660 5751 -370 665 117 0 6 chrX 152531072 152531321 -24442819 + AluSq SINE Alu 1 299 -14 2122 79 6 61 chrX 152531519 152531849 -24442291 + AluSp SINE Alu 1 312 -1 253 264 42 109 chrX 152532195 152532434 -24441706 + L1ME3A LINE L1 561 783 -5336 * 886 258 52 21 chrX 152532419 152532748 -24441392 + L1ME3A LINE L1 5302 5640 -505 547 178 52 30 chrX 152532748 152532883 -24441257 - Charlie1 DNA MER1_type -1 2760 2623 * 952 211 47 43 chrX 152532876 152533026 -24441114 - Charlie1 DNA MER1_type -2528 233 85 1466 180 3 18 chrX 152533026 152533310 -24440830 + AluJb SINE Alu 1 280 -32 186 103 0 0 chrX 152533310 152533339 -24440801 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 952 211 47 43 chrX 152533339 152533419 -24440721 - Charlie1 DNA MER1_type -2675 86 1 763 242 84 24 chrX 152533425 152533662 -24440478 + L1ME3A LINE L1 5660 5904 -249 735 138 0 0 chrX 152533770 152533879 -24440261 + AluSp/q SINE Alu 190 298 -15 2057 93 7 0 chrX 152533879 152534158 -24439982 - AluSq SINE Alu -30 283 3 6647 168 26 20 chrX 152534160 152536713 -24437427 - L1 LINE L1 -2642 4206 1638 663 216 26 0 chrX 152536705 152536777 -24437363 - L1ME1 LINE L1 -198 5968 5899 * 261 0 0 0 chrX 152536777 152536806 -24437334 + (TTA)n Simple_repeat Simple_repeat 2 30 0 663 216 26 0 chrX 152536806 152536886 -24437254 - L1ME1 LINE L1 -267 5899 5812 2020 218 42 15 chrX 152537417 152537711 -24436429 - MLT1C LTR MaLR 0 467 155 2123 154 122 8 chrX 152537711 152538095 -24436045 + MSTA LTR MaLR 1 428 0 2020 218 42 15 chrX 152538095 152538255 -24435885 - MLT1C LTR MaLR -312 155 1 1711 198 24 71 chrX 152538504 152538913 -24435227 - MLT1B LTR MaLR 0 390 1 392 286 68 10 chrX 152539862 152540052 -24434088 - MIR SINE MIR -54 208 2 2226 178 65 17 chrX 152540406 152540885 -24433255 + L1MB5 LINE L1 5629 6130 -44 192 272 88 18 chrX 152540916 152541030 -24433110 - L2 LINE L2 -269 3003 2882 2093 200 86 19 chrX 152541367 152541833 -24432307 + MLT1D LTR MaLR 1 497 -8 239 267 40 27 chrX 152542078 152542153 -24431987 - MIR3 SINE MIR -45 163 88 2379 109 0 3 chrX 152542237 152542550 -24431590 + AluSx SINE Alu 1 312 0 21 0 0 0 chrX 152543410 152543431 -24430709 + AT_rich Low_complexity Low_complexity 1 21 0 1543 176 55 7 chrX 152543691 152543963 -24430177 - AluJb SINE Alu -27 285 1 912 130 0 0 chrX 152543983 152544106 -24430034 - FLAM_C SINE Alu -20 123 1 1742 150 38 6 chrX 152544814 152545134 -24429006 - L1MB2 LINE L1 0 6171 5842 382 311 63 44 chrX 152545262 152545767 -24428373 - L2 LINE L2 -509 2805 2291 257 280 53 8 chrX 152545773 152545905 -24428235 - L2 LINE L2 -1506 1808 1671 1164 195 8 8 chrX 152545911 152546152 -24427988 + L1M4 LINE L1 4550 4790 -1356 210 313 139 0 chrX 152546175 152546290 -24427850 - L2 LINE L2 -943 2371 2241 180 186 23 0 chrX 152546551 152546594 -24427546 + MIR SINE MIR 85 128 -134 800 257 26 0 chrX 152546792 152547018 -24427122 - MIR SINE MIR 0 262 31 2321 105 0 3 chrX 152547164 152547469 -24426671 - AluSx SINE Alu -8 304 1 250 268 45 36 chrX 152547660 152547772 -24426368 - MIR SINE MIR -58 150 38 826 207 14 50 chrX 152547923 152548145 -24425995 - L1MB5 LINE L1 0 6174 5961 2246 88 0 11 chrX 152549693 152550010 -24424130 - AluSg SINE Alu 0 314 1 972 206 26 5 chrX 152550511 152550705 -24423435 + MER3 DNA MER1_type 1 198 -11 4972 146 19 17 chrX 152550964 152551459 -24422681 + L1 LINE L1 4042 4541 -1605 2370 68 20 3 chrX 152551459 152551753 -24422387 + AluY SINE Alu 1 299 -12 4972 146 19 17 chrX 152551753 152552138 -24422002 + L1 LINE L1 4541 4924 -1222 1331 60 51 74 chrX 152552134 152552214 -24421926 + L1P LINE L1 3283 3363 -2783 * 2351 74 0 17 chrX 152552214 152552511 -24421629 + AluSg SINE Alu 1 292 -18 180 0 0 0 chrX 152552511 152552531 -24421609 + (GA)n Simple_repeat Simple_repeat 2 21 0 1331 60 51 74 chrX 152552531 152552666 -24421474 + L1P LINE L1 3361 3494 -2652 986 175 57 39 chrX 152552794 152553234 -24420906 + MLT1D LTR MaLR 1 499 -6 267 191 59 0 chrX 152553273 152553341 -24420799 - L2 LINE L2 -10 3303 3232 479 163 20 0 chrX 152553405 152553503 -24420637 + GA-rich Low_complexity Low_complexity 1 100 0 264 77 0 0 chrX 152554171 152554210 -24419930 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1908 170 81 26 chrX 152554253 152554683 -24419457 + MLT1C LTR MaLR 6 459 -8 265 297 45 10 chrX 152554966 152555097 -24419043 + L1M2 LINE L1 5437 5577 -577 363 157 30 0 chrX 152555391 152555463 -24418677 + L1MB4 LINE L1 6076 6149 -31 1327 155 14 5 chrX 152555463 152555676 -24418464 + AluJb SINE Alu 84 298 -14 1346 179 4 25 chrX 152555863 152556103 -24418037 + AluJo SINE Alu 1 235 -77 200 139 0 23 chrX 152556120 152556163 -24417977 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 2062 140 0 7 chrX 152556486 152556793 -24417347 + AluJb SINE Alu 1 305 -7 752 157 26 46 chrX 152556913 152557066 -24417074 + L1MC3 LINE L1 7540 7689 -96 814 161 0 15 chrX 152557099 152557229 -24416911 + FLAM_C SINE Alu 2 129 -14 1483 138 28 0 chrX 152557240 152557494 -24416646 + L1MA4 LINE L1 6029 6289 -11 457 146 34 22 chrX 152557511 152557600 -24416540 + L1MC3 LINE L1 7681 7770 -15 2188 97 6 141 chrX 152557741 152557775 -24416365 - L1MA5A LINE L1 0 6297 6260 1745 181 0 3 chrX 152557775 152558062 -24416078 + AluJb SINE Alu 1 286 -26 2188 97 6 141 chrX 152558062 152558129 -24416011 - L1MA5A LINE L1 -37 6260 6186 2108 99 0 31 chrX 152558129 152558259 -24415881 + AluSx SINE Alu 1 133 -195 2546 74 0 0 chrX 152558259 152558568 -24415572 + AluY SINE Alu 1 309 -2 2108 99 0 31 chrX 152558568 152558774 -24415366 + AluSx SINE Alu 133 328 0 2188 97 6 141 chrX 152558774 152558892 -24415248 - L1MA5A LINE L1 -111 6186 6054 1968 122 22 0 chrX 152558892 152559162 -24414978 + AluSx SINE Alu 1 276 -36 2188 97 6 141 chrX 152559162 152559413 -24414727 - L1MA5A LINE L1 -243 6054 5888 338 297 63 0 chrX 152559903 152560078 -24414062 + L2 LINE L2 2401 2586 -728 610 153 10 0 chrX 152561077 152561175 -24412965 + AluSg/x SINE Alu 124 222 -88 2424 188 95 42 chrX 152562127 152562597 -24411543 + L1ME2 LINE L1 5486 6001 -163 1891 176 7 0 chrX 152562597 152562898 -24411242 + AluJb SINE Alu 1 303 -9 2424 188 95 42 chrX 152562898 152563072 -24411068 + L1ME2 LINE L1 6001 6164 0 429 59 0 0 chrX 152563256 152563307 -24410833 + MER66A LTR ERV1 287 337 -141 1916 213 18 8 chrX 152563840 152564225 -24409915 + L1MB5 LINE L1 5780 6168 -6 207 0 0 0 chrX 152565206 152565229 -24408911 + (CGGGGG)n Simple_repeat Simple_repeat 2 24 0 2856 184 74 31 chrX 152565811 152566274 -24407866 - L1MD2 LINE L1 -2 6357 5857 2365 108 51 20 chrX 152566274 152566627 -24407513 + THE1B LTR MaLR 1 364 0 2856 184 74 31 chrX 152566627 152566809 -24407331 - L1MD2 LINE L1 -502 5857 5684 453 278 107 27 chrX 152566813 152567000 -24407140 - HAL1b LINE L1 -780 568 367 480 248 23 38 chrX 152567193 152567326 -24406814 - L2 LINE L2 -1 3312 3182 840 146 0 29 chrX 152567647 152567784 -24406356 + FLAM_C SINE Alu 1 133 0 231 278 125 46 chrX 152567965 152568181 -24405959 + L1M4 LINE L1 4031 4263 -1883 1884 159 17 0 chrX 152568186 152568475 -24405665 + AluJo SINE Alu 1 294 -18 262 179 0 0 chrX 152568561 152568600 -24405540 + Alu SINE Alu 246 284 -18 429 20 0 0 chrX 152568600 152568650 -24405490 + (CA)n Simple_repeat Simple_repeat 2 51 0 2378 108 0 0 chrX 152568700 152569006 -24405134 + AluSq SINE Alu 1 306 -7 258 156 0 0 chrX 152569178 152569223 -24404917 + A-rich Low_complexity Low_complexity 1 45 0 4063 163 45 32 chrX 152570213 152570270 -24403870 + L1MB7 LINE L1 5335 5390 -794 1860 140 3 56 chrX 152570270 152570592 -24403548 + AluJb SINE Alu 1 305 -7 4063 163 45 32 chrX 152570592 152571343 -24402797 + L1MB7 LINE L1 5390 6153 -31 221 306 81 9 chrX 152572134 152572245 -24401895 + L2 LINE L2 3145 3263 -9 2570 50 0 3 chrX 152572460 152572758 -24401382 - AluSc SINE Alu -10 299 3 270 240 10 52 chrX 152572975 152573071 -24401069 + L1ME LINE L1 5660 5751 -370 662 105 0 6 chrX 152573087 152573336 -24400804 + AluSq SINE Alu 1 299 -14 2314 76 6 58 chrX 152573534 152573864 -24400276 + AluSp SINE Alu 1 313 0 261 264 42 109 chrX 152574210 152574449 -24399691 + L1ME LINE L1 561 783 -5336 * 892 258 52 21 chrX 152574434 152574763 -24399377 + L1ME LINE L1 5302 5640 -505 559 178 52 30 chrX 152574763 152574898 -24399242 - Charlie1 DNA MER1_type -1 2760 2623 991 202 28 46 chrX 152574905 152575041 -24399099 - Charlie1 DNA MER1_type -2547 214 77 1571 180 3 18 chrX 152575041 152575325 -24398815 + AluJb SINE Alu 1 280 -32 186 103 0 0 chrX 152575325 152575354 -24398786 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 991 202 28 46 chrX 152575354 152575434 -24398706 - Charlie1 DNA MER1_type -2682 79 1 359 272 0 0 chrX 152575452 152575534 -24398606 + L1ME LINE L1 5662 5745 -408 2381 200 73 22 chrX 152625798 152626383 -24347757 - Charlie1 DNA MER1_type -2 2759 2145 2087 213 76 34 chrX 152626393 152627009 -24347131 - MLT1E1 LTR MaLR 0 654 13 985 234 65 72 chrX 152627615 152628002 -24346138 - L1MD2 LINE L1 -1 6358 5950 4590 194 20 65 chrX 152629544 152629665 -24344475 - L1MC3 LINE L1 -1042 6743 6618 1587 188 48 43 chrX 152629665 152630037 -24344103 - MLT1A2 LTR MaLR 0 374 1 4590 194 20 65 chrX 152630037 152630996 -24343144 - L1MC3 LINE L1 -1167 6618 5712 1700 197 3 0 chrX 152630996 152631285 -24342855 - AluJo SINE Alu -22 290 1 4590 194 20 65 chrX 152631285 152631329 -24342811 - L1MC3 LINE L1 -2073 5712 5668 1688 180 61 27 chrX 152631344 152631467 -24342673 + L1MC/D LINE L1 5162 5279 -1099 2460 88 0 0 chrX 152631467 152631774 -24342366 + AluY SINE Alu 1 307 -4 1688 180 61 27 chrX 152631774 152632111 -24342029 + L1MC/D LINE L1 5279 5635 -743 236 268 175 0 chrX 152632437 152632534 -24341606 + L2 LINE L2 2621 2734 -580 399 171 14 2 chrX 152632534 152632629 -24341511 + L1ME2 LINE L1 5271 5370 -803 1048 169 6 0 chrX 152632636 152632813 -24341327 - L1P LINE L1 -2300 3846 3669 776 185 7 0 chrX 152632809 152632960 -24341180 + L1PA13 LINE L1 4750 4901 -1245 * 342 0 0 0 chrX 152632961 152632999 -24341141 + (TA)n Simple_repeat Simple_repeat 1 38 0 3293 80 7 5 chrX 152632999 152633435 -24340705 - L1PA6 LINE L1 -19 6135 5699 * 6100 112 13 1 chrX 152633401 152634671 -24339469 + L1PA13 LINE L1 4892 6163 0 2141 224 111 50 chrX 152634704 152635388 -24338752 + L1ME2 LINE L1 5429 6154 -10 1639 47 0 37 chrX 152637588 152637803 -24336337 - L1PA7 LINE L1 -15 6139 5933 582 157 29 0 chrX 152637809 152637911 -24336229 - L1MB4 LINE L1 -320 5860 5756 756 189 98 6 chrX 152638003 152638167 -24335973 + MLT1A2 LTR MaLR 1 179 -195 498 301 81 40 chrX 152639516 152640201 -24333939 - L1ME4a LINE L1 -96 6025 5313 2473 166 21 54 chrX 152640311 152641010 -24333130 - L1MB4 LINE L1 -399 5779 5103 350 346 139 13 chrX 152641013 152641250 -24332890 - L1ME4a LINE L1 -980 5166 4900 192 40 0 0 chrX 152642173 152642198 -24331942 + (TA)n Simple_repeat Simple_repeat 1 25 0 271 102 0 0 chrX 152642198 152642247 -24331893 - L1PA6 LINE L1 -1 6153 6105 * 375 62 0 0 chrX 152642234 152642282 -24331858 + L1PA5 LINE L1 6028 6075 -79 978 139 6 35 chrX 152642290 152642463 -24331677 - L1MC1 LINE L1 0 6333 6166 180 111 0 0 chrX 152642684 152642711 -24331429 + (CGTG)n Simple_repeat Simple_repeat 1 27 0 652 229 62 0 chrX 152642712 152642891 -24331249 - L1MD2 LINE L1 -223 6136 5947 269 188 0 0 chrX 152642893 152642941 -24331199 - MER46C DNA MER2_type -289 49 2 4454 88 11 30 chrX 152643474 152644141 -24329999 + MER4A LTR ERV1 1 654 -10 22 0 0 0 chrX 152646736 152646758 -24327382 + AT_rich Low_complexity Low_complexity 1 22 0 431 214 0 11 chrX 152647040 152647129 -24327011 - MLT1D LTR MaLR 0 390 303 490 182 50 0 chrX 152647185 152647284 -24326856 - MLT1D LTR MaLR -363 142 39 257 0 30 0 chrX 152655686 152655719 -24318421 + (CAAT)n Simple_repeat Simple_repeat 1 34 0 270 0 0 0 chrX 152655741 152655771 -24318369 + (CTTA)n Simple_repeat Simple_repeat 1 30 0 185 255 0 21 chrX 152655846 152655893 -24318247 + MIR SINE MIR 215 260 -2 2408 88 0 25 chrX 152659919 152660239 -24313901 - AluSx SINE Alu 0 312 1 2340 96 3 17 chrX 152662068 152662369 -24311771 - AluSg SINE Alu -13 297 1 220 368 13 0 chrX 152662803 152662879 -24311261 - L2 LINE L2 0 3272 3196 2265 123 3 0 chrX 152663930 152664239 -24309901 + AluSx SINE Alu 1 310 -2 1540 178 60 21 chrX 152665537 152665818 -24308322 + AluJo SINE Alu 1 292 -20 2269 106 0 7 chrX 152665836 152666139 -24308001 - AluSx SINE Alu -11 301 1 3882 168 37 12 chrX 152666564 152667935 -24306205 + L1MB8 LINE L1 4657 6061 -117 923 121 0 8 chrX 152667939 152668071 -24306069 + FLAM_C SINE Alu 1 131 -12 552 179 15 8 chrX 152668076 152668210 -24305930 + L1MB7 LINE L1 6050 6184 0 216 0 0 0 chrX 152668232 152668256 -24305884 + (A)n Simple_repeat Simple_repeat 1 24 0 253 125 62 0 chrX 152668325 152668373 -24305767 - L1MB7 LINE L1 -10 6174 6124 704 293 42 95 chrX 152668426 152668683 -24305457 - L2 LINE L2 -529 2785 2559 2162 96 7 3 chrX 152668683 152668974 -24305166 + AluSq SINE Alu 21 312 -1 704 293 42 95 chrX 152668974 152669146 -24304994 - L2 LINE L2 -755 2559 2379 290 275 154 26 chrX 152669146 152669379 -24304761 - L2 LINE L2 -1096 2218 1956 203 313 164 22 chrX 152669743 152669877 -24304263 + MIR3 SINE MIR 7 159 -49 592 268 22 6 chrX 152670388 152670567 -24303573 + L1MEc LINE L1 38 219 -6177 366 250 29 0 chrX 152670628 152670732 -24303408 + L1M4 LINE L1 3422 3528 -2618 2238 58 0 29 chrX 152670744 152671022 -24303118 - AluSg SINE Alu -18 292 23 487 234 6 114 chrX 152671050 152671225 -24302915 + L1M4 LINE L1 3750 3905 -2241 1592 155 30 69 chrX 152672041 152672345 -24301795 - AluJb SINE Alu -20 292 1 2230 167 6 8 chrX 152672622 152672988 -24301152 + MLT1A1 LTR MaLR 1 365 0 2000 142 3 23 chrX 152673411 152673714 -24300426 - AluJo SINE Alu -15 297 1 204 322 0 0 chrX 152674087 152674146 -24299994 - MIR3 SINE MIR -13 195 137 425 292 201 0 chrX 152674767 152674911 -24299229 + MER5A DNA MER1_type 9 181 -8 391 252 92 0 chrX 152674927 152675058 -24299082 - MER5A DNA MER1_type 0 189 47 266 250 0 0 chrX 152675084 152675148 -24298992 + MER5B DNA MER1_type 1 64 -114 247 243 40 27 chrX 152676601 152676675 -24297465 + L2 LINE L2 3196 3270 -2 1876 133 41 85 chrX 152677409 152677458 -24296682 - L1MB3 LINE L1 -3 6180 6130 1905 164 10 3 chrX 152677458 152677756 -24296384 - AluJo SINE Alu -8 304 5 1876 133 41 85 chrX 152677756 152678035 -24296105 - L1MB3 LINE L1 -53 6130 5871 2750 42 0 3 chrX 152678035 152678346 -24295794 - AluY SINE Alu -1 310 1 1876 133 41 85 chrX 152678346 152678428 -24295712 - L1MB3 LINE L1 -312 5871 5787 1995 142 39 3 chrX 152678450 152678780 -24295360 + MER7A DNA MER2_type 7 346 0 1301 178 0 0 chrX 152678780 152679011 -24295129 - L1MB3 LINE L1 -392 5791 5561 220 304 0 29 chrX 152679109 152679178 -24294962 - L2 LINE L2 -2 3311 3245 405 328 24 58 chrX 152679540 152679817 -24294323 - L2 LINE L2 -410 2904 2636 3012 87 31 14 chrX 152679817 152680242 -24293898 + MSTB1 LTR MaLR 1 432 0 405 328 24 58 chrX 152680242 152680257 -24293883 - L2 LINE L2 -678 2636 2622 1462 276 194 12 chrX 152680335 152680981 -24293159 - L2 LINE L2 -1102 2212 1450 405 269 222 0 chrX 152680994 152681165 -24292975 + MIR SINE MIR 52 260 -2 347 272 216 0 chrX 152681541 152681666 -24292474 - MIR SINE MIR -22 240 89 225 193 18 18 chrX 152681978 152682035 -24292105 + L1MB5 LINE L1 5613 5669 -511 1528 189 25 70 chrX 152682036 152682438 -24291702 + MLT1B LTR MaLR 1 626 0 2021 189 38 29 chrX 152682440 152682792 -24291348 + L1MB5 LINE L1 5694 6053 -121 2385 89 3 0 chrX 152682792 152683096 -24291044 - AluSq SINE Alu -8 305 1 2021 189 38 29 chrX 152683096 152683220 -24290920 + L1MB5 LINE L1 6053 6174 0 1569 208 55 17 chrX 152684410 152684828 -24289312 - MLT1C LTR MaLR 0 467 34 248 293 70 81 chrX 152684894 152685027 -24289113 - L2 LINE L2 -466 2848 2718 1113 89 137 0 chrX 152685027 152685217 -24288923 + L1MA8 LINE L1 6070 6285 -6 248 293 70 81 chrX 152685217 152685342 -24288798 - L2 LINE L2 -596 2718 2593 1286 194 0 40 chrX 152685343 152685585 -24288555 + L1 LINE L1 3593 3824 -2322 2044 209 64 7 chrX 152685585 152686025 -24288115 - MLT1C LTR MaLR -2 465 1 1286 194 0 40 chrX 152686025 152686060 -24288080 + L1 LINE L1 3824 3859 -2287 455 206 0 0 chrX 152686064 152686156 -24287984 + L1 LINE L1 4149 4240 -1906 875 180 171 130 chrX 152686450 152686934 -24287206 + MLT1D LTR MaLR 1 504 -1 257 272 68 0 chrX 152686935 152687038 -24287102 + L2 LINE L2 2359 2468 -846 770 237 19 53 chrX 152687056 152687318 -24286822 - MIR SINE MIR -4 258 6 514 295 94 64 chrX 152687351 152687680 -24286460 - L2 LINE L2 -977 2337 1999 237 200 0 36 chrX 152688533 152688588 -24285552 + MIR3 SINE MIR 153 205 -3 1832 118 0 0 chrX 152690898 152691144 -24282996 - AluSq SINE Alu -67 246 1 269 354 131 18 chrX 152691587 152691634 -24282506 - L2 LINE L2 -342 2972 2932 285 51 0 0 chrX 152691634 152691673 -24282467 + (TG)n Simple_repeat Simple_repeat 2 40 0 269 354 131 18 chrX 152691673 152691854 -24282286 - L2 LINE L2 -382 2932 2718 2224 152 12 6 chrX 152692543 152692885 -24281255 - MER2 DNA MER2_type 0 344 1 258 198 0 29 chrX 152693452 152693528 -24280612 + HAL1b LINE L1 1243 1302 -46 2521 119 0 18 chrX 152694513 152694856 -24279284 - MER1B DNA MER1_type 0 337 1 1189 184 99 7 chrX 152695108 152695391 -24278749 + L1ME1 LINE L1 1832 2140 -4256 6471 131 21 12 chrX 152695391 152697277 -24276863 + L1PA13 LINE L1 4235 6143 -20 6929 20 0 3 chrX 152697277 152698029 -24276111 + L1PA3 LINE L1 5406 6155 0 6471 131 21 12 chrX 152698029 152698050 -24276090 + L1PA13 LINE L1 6143 6162 -1 * 7870 221 49 9 chrX 152698046 152700120 -24274020 + L1ME1 LINE L1 2134 4260 -1955 1916 254 75 16 chrX 152700113 152700677 -24273463 + L1ME1 LINE L1 5578 6174 -61 * 315 0 0 0 chrX 152702261 152702296 -24271844 + (A)n Simple_repeat Simple_repeat 1 35 0 201 39 0 0 chrX 152702792 152702818 -24271322 + (TG)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chrX 152703419 152703442 -24270698 + AT_rich Low_complexity Low_complexity 1 23 0 232 122 0 82 chrX 152703442 152703491 -24270649 + MER103 DNA DNA 17 61 -105 2555 56 0 3 chrX 152703498 152703803 -24270337 - AluSc SINE Alu -5 304 1 276 30 0 0 chrX 152706931 152706964 -24267176 + (TG)n Simple_repeat Simple_repeat 2 34 0 430 267 27 14 chrX 152709691 152709837 -24264303 + L1MA10 LINE L1 6187 6334 0 278 268 103 36 chrX 152709891 152710058 -24264082 - HAL1b LINE L1 -110 2397 830 778 222 111 41 chrX 152710118 152710220 -24263920 - MIR SINE MIR -1 261 168 2137 85 14 3 chrX 152710220 152710547 -24263593 + AluSx SINE Alu 1 330 0 778 222 111 41 chrX 152710547 152710686 -24263454 - MIR SINE MIR -94 168 2 2391 162 67 0 chrX 152710972 152711373 -24262767 + MSTA LTR MaLR 1 428 0 234 313 127 0 chrX 152711689 152711839 -24262301 + MIR3 SINE MIR 16 184 -24 437 294 86 37 chrX 152711925 152712112 -24262028 + MIR SINE MIR 9 204 -58 5139 190 54 14 chrX 152712567 152713802 -24260338 - L1MD1 LINE L1 -1 6635 5302 225 0 0 0 chrX 152713802 152713827 -24260313 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5139 190 54 14 chrX 152713827 152714337 -24259803 - L1MD1 LINE L1 -1334 5302 4814 518 204 0 40 chrX 152714374 152714561 -24259579 + L1M3 LINE L1 5219 5571 -612 1074 193 95 24 chrX 152714562 152714915 -24259225 + MSTC LTR MaLR 7 428 0 534 210 33 99 chrX 152714915 152715096 -24259044 - L1MD1 LINE L1 -1725 4815 4647 * 6937 183 83 16 chrX 152715090 152716886 -24257254 - L1MD1 LINE L1 -4455 2085 17 289 224 112 56 chrX 152717523 152717630 -24256510 - MIR3 SINE MIR -17 191 79 253 187 32 89 chrX 152718040 152718163 -24255977 + MER113 DNA MER1_type? 1 116 -405 493 250 137 36 chrX 152718485 152718653 -24255487 - MER5A DNA MER1_type -4 185 1 1004 128 0 0 chrX 152718658 152718791 -24255349 + FLAM_C SINE Alu 1 133 0 198 103 0 0 chrX 152718797 152718826 -24255314 + (GAA)n Simple_repeat Simple_repeat 2 30 0 539 226 68 100 chrX 152718894 152719015 -24255125 + MIR SINE MIR 42 156 -106 979 201 38 0 chrX 152719015 152719174 -24254966 - FAM SINE Alu -9 166 2 539 226 68 100 chrX 152719174 152719242 -24254898 + MIR SINE MIR 156 225 -37 216 0 0 0 chrX 152719257 152719281 -24254859 + (ATG)n Simple_repeat Simple_repeat 3 26 0 21 57 0 0 chrX 152719641 152719676 -24254464 + AT_rich Low_complexity Low_complexity 1 35 0 306 289 106 0 chrX 152720940 152721044 -24253096 - L2 LINE L2 0 3272 3158 1697 142 84 0 chrX 152721994 152722153 -24251987 - AluJb SINE Alu -14 298 154 429 70 0 0 chrX 152722153 152722210 -24251930 + (TG)n Simple_repeat Simple_repeat 2 58 0 1697 142 84 0 chrX 152722210 152722325 -24251815 - AluJb SINE Alu -158 154 1 2276 82 0 10 chrX 152722558 152722851 -24251289 - AluSx SINE Alu -2 310 21 325 211 169 0 chrX 152723169 152723240 -24250900 - MIR SINE MIR -118 144 62 464 256 47 63 chrX 152724145 152724336 -24249804 + MLT1K LTR MaLR 398 585 -3 362 326 0 31 chrX 152724336 152724465 -24249675 + MIR3 SINE MIR 9 133 -75 1911 263 113 21 chrX 152725010 152725866 -24248274 + L2 LINE L2 2128 3059 -254 261 86 0 0 chrX 152725892 152725927 -24248213 - MER34C LTR ERV1 -511 74 40 21 0 0 0 chrX 152726212 152726233 -24247907 + AT_rich Low_complexity Low_complexity 1 21 0 27 110 0 0 chrX 152727081 152727199 -24246941 + GC_rich Low_complexity Low_complexity 1 118 0 23 86 0 0 chrX 152727235 152727293 -24246847 + GC_rich Low_complexity Low_complexity 1 58 0 200 98 0 24 chrX 152727298 152727339 -24246801 + (CCG)n Simple_repeat Simple_repeat 1 40 0 235 169 31 31 chrX 152727514 152727579 -24246561 + G-rich Low_complexity Low_complexity 6 70 0 396 311 87 35 chrX 152728424 152728626 -24245514 + MLT1L LTR MaLR 344 563 -52 1648 184 53 68 chrX 152728626 152729006 -24245134 + MLT1A2 LTR MaLR 1 374 0 396 311 87 35 chrX 152729006 152729057 -24245083 + MLT1L LTR MaLR 563 610 -5 503 307 50 94 chrX 152729200 152729486 -24244654 - L2 LINE L2 -69 3203 2935 2380 176 14 52 chrX 152729486 152729928 -24244212 - MSTB LTR MaLR 0 426 2 503 307 50 94 chrX 152729928 152730003 -24244137 - L2 LINE L2 -337 2935 2858 203 211 141 28 chrX 152730093 152730164 -24243976 - MER5A DNA MER1_type -109 80 2 1740 239 48 34 chrX 152730192 152730745 -24243395 + MLT1G1 LTR MaLR 3 555 0 432 318 36 21 chrX 152730868 152731060 -24243080 - LTR40b LTR ERVL -1 461 267 374 169 20 131 chrX 152731063 152731114 -24243026 + MLT1H1 LTR MaLR 31 86 -463 2324 78 0 0 chrX 152731114 152731424 -24242716 + AluSx SINE Alu 1 310 0 374 169 20 131 chrX 152731424 152731494 -24242646 + MLT1H1 LTR MaLR 86 159 -390 511 242 42 53 chrX 152732110 152732300 -24241840 - MER5A DNA MER1_type -1 188 1 371 316 164 47 chrX 152732308 152732691 -24241449 - L2 LINE L2 -555 2759 2332 329 281 0 11 chrX 152732706 152732795 -24241345 - MER91B DNA MER1_type -13 177 90 328 262 14 103 chrX 152732813 152732893 -24241247 - MER91B DNA MER1_type -58 132 69 1434 149 56 121 chrX 152732893 152733283 -24240857 - MLT1A1 LTR MaLR 0 365 1 328 262 14 103 chrX 152733283 152733347 -24240793 - MER91B DNA MER1_type -121 69 1 261 200 154 0 chrX 152733348 152733413 -24240727 - L2 LINE L2 -981 2333 2259 1042 284 21 0 chrX 152733422 152733711 -24240429 - Charlie8 DNA MER1_type -612 1805 1511 1816 145 14 4 chrX 152733719 152733995 -24240145 + MSTC LTR MaLR 150 428 0 23 33 0 0 chrX 152734532 152734562 -24239578 + AT_rich Low_complexity Low_complexity 1 30 0 316 341 105 28 chrX 152734614 152734688 -24239452 - L2 LINE L2 -1026 2288 2221 952 209 6 28 chrX 152734688 152734870 -24239270 - MER45A DNA AcHobo 0 178 1 316 341 105 28 chrX 152734870 152735185 -24238955 - L2 LINE L2 -1093 2221 1869 219 167 0 0 chrX 152735290 152735332 -24238808 + (TTG)n Simple_repeat Simple_repeat 3 44 0 6294 115 20 17 chrX 152735921 152736978 -24237162 - L1 LINE L1 -3843 3722 2660 689 221 44 33 chrX 152737075 152737256 -24236884 - LTR41 LTR ERVL -587 186 4 6623 127 21 47 chrX 152737606 152738480 -24235660 - L1MC2 LINE L1 -1 6343 5514 2756 26 0 3 chrX 152738480 152738791 -24235349 - AluY SINE Alu -1 310 1 6623 127 21 47 chrX 152738791 152739238 -24234902 - L1MC2 LINE L1 -830 5514 5057 887 265 10 0 chrX 152739283 152739483 -24234657 + MER63A DNA MER1_type 1 202 -8 264 296 97 21 chrX 152739494 152739680 -24234460 - L1MEd LINE L1 -5308 811 612 1943 160 37 107 chrX 152739929 152740466 -24233674 - MLT1D LTR MaLR 0 505 3 26 0 0 0 chrX 152740767 152740793 -24233347 + AT_rich Low_complexity Low_complexity 1 26 0 1328 43 12 6 chrX 152740793 152740954 -24233186 - L1PA4 LINE L1 -3 6152 5991 257 235 71 35 chrX 152741023 152741108 -24233032 - L2 LINE L2 0 3313 3226 243 336 216 18 chrX 152741544 152742226 -24231914 + L2 LINE L2 1865 2681 -633 487 206 44 31 chrX 152742443 152742492 -24231648 - L1ME3A LINE L1 -218 5952 5905 1761 149 23 35 chrX 152742492 152742834 -24231306 + MER44D DNA MER2_type 1 608 -1 487 206 44 31 chrX 152742834 152742944 -24231196 - L1ME3A LINE L1 -265 5905 5791 * 3288 168 22 59 chrX 152742939 152743369 -24230771 - L1 LINE L1 -1542 4604 4160 1948 145 17 14 chrX 152743369 152743665 -24230475 + AluJb SINE Alu 1 297 -15 3288 168 22 59 chrX 152743665 152743749 -24230391 - L1 LINE L1 -1986 4160 4074 1617 143 22 96 chrX 152743749 152744071 -24230069 - AluJo SINE Alu -13 299 2 3288 168 22 59 chrX 152744071 152744373 -24229767 - L1 LINE L1 -2072 4074 3817 273 393 111 16 chrX 152744375 152744619 -24229521 + L2 LINE L2 2997 3263 -9 204 304 179 0 chrX 152744651 152744763 -24229377 + MIR SINE MIR 111 242 -20 1808 186 91 32 chrX 152745006 152745480 -24228660 + MLT1D LTR MaLR 1 502 -3 1051 152 31 5 chrX 152745543 152745734 -24228406 - L1MA6 LINE L1 -224 6076 5881 335 200 0 0 chrX 152745734 152745801 -24228339 + L1MA6 LINE L1 6227 6296 -4 183 266 47 0 chrX 152745875 152745939 -24228201 - MIR3 SINE MIR -25 183 117 205 345 78 0 chrX 152746932 152747048 -24227092 + L3 LINE CR1 1254 1378 -199 241 303 8 41 chrX 152747060 152747182 -24226958 + MIR SINE MIR 80 197 -65 21 0 0 0 chrX 152748639 152748660 -24225480 + AT_rich Low_complexity Low_complexity 1 21 0 592 317 85 15 chrX 152749979 152750389 -24223751 - L1ME3A LINE L1 -371 5799 5361 367 257 5 9 chrX 152750441 152750548 -24223592 + MIR SINE MIR 93 198 -63 394 224 64 8 chrX 152750676 152750801 -24223339 - L1ME3 LINE L1 -9 6153 6022 6301 61 11 4 chrX 152750856 152751948 -24222192 + L1PA8A LINE L1 5003 6103 -28 186 43 0 0 chrX 152751968 152751991 -24222149 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 1549 146 12 109 chrX 152752145 152752475 -24221665 - AluJo SINE Alu -14 298 1 1120 191 63 74 chrX 152752568 152753014 -24221126 - MLT1C LTR MaLR -16 451 1 1654 257 92 39 chrX 152753312 152754160 -24219980 - L2 LINE L2 -34 3279 2334 455 256 171 17 chrX 152754417 152754651 -24219489 + L1 LINE L1 4141 4410 -1736 253 355 123 13 chrX 152755477 152755632 -24218508 + L2 LINE L2 3096 3267 -5 23 0 0 0 chrX 152757112 152757135 -24217005 + AT_rich Low_complexity Low_complexity 1 23 0 2376 86 0 0 chrX 152758256 152758558 -24215582 + AluSq SINE Alu 1 302 -11 340 158 171 0 chrX 152758696 152758778 -24215362 - HAL1 LINE L1 0 2507 2412 3641 155 50 10 chrX 152758804 152759501 -24214639 - L1MA9 LINE L1 -5 6307 5583 2435 114 30 47 chrX 152759501 152759556 -24214584 + MSTB1 LTR MaLR 1 55 -377 1898 164 6 6 chrX 152759556 152759886 -24214254 + AluSx SINE Alu 1 312 0 2435 114 30 47 chrX 152759886 152760259 -24213881 + MSTB1 LTR MaLR 55 422 -10 267 226 140 11 chrX 152760973 152761066 -24213074 - L1MC5 LINE L1 -108 7853 7749 2143 113 7 3 chrX 152761727 152762048 -24212092 + AluSq SINE Alu 1 322 0 224 324 0 0 chrX 152762118 152762192 -24211948 + MER5A DNA MER1_type 1 74 -115 32 0 0 0 chrX 152762277 152762309 -24211831 + AT_rich Low_complexity Low_complexity 1 32 0 502 176 114 0 chrX 152762349 152762480 -24211660 - L1MA8 LINE L1 -100 6191 6046 7467 22 30 0 chrX 152763247 152764227 -24209913 - L1PA5 LINE L1 0 6154 5165 1222 199 34 93 chrX 152764323 152764731 -24209409 - MLT1B LTR MaLR -5 385 2 2516 233 15 26 chrX 152764973 152765536 -24208604 - L1ME1 LINE L1 -5 6161 5606 2468 57 3 3 chrX 152765536 152765836 -24208304 - AluY SINE Alu -11 300 1 2516 233 15 26 chrX 152765836 152765956 -24208184 - L1ME1 LINE L1 -560 5606 5486 661 181 38 0 chrX 152766131 152766264 -24207876 + L1PB4 LINE L1 6017 6154 -2 240 321 38 19 chrX 152766795 152766901 -24207239 + MIR SINE MIR 2 109 -153 1053 165 20 59 chrX 152767319 152767574 -24206566 + MLT1D LTR MaLR 1 245 -260 308 336 58 7 chrX 152768075 152768176 -24205964 - L1ME4a LINE L1 -43 6078 5967 363 44 0 0 chrX 152768176 152768221 -24205919 + (TG)n Simple_repeat Simple_repeat 2 46 0 308 336 58 7 chrX 152768221 152768256 -24205884 - L1ME4a LINE L1 -154 5967 5935 246 62 0 0 chrX 152768256 152768288 -24205852 + (TA)n Simple_repeat Simple_repeat 1 32 0 1538 147 13 99 chrX 152768329 152768641 -24205499 - AluJo SINE Alu -21 291 7 180 0 0 0 chrX 152769374 152769394 -24204746 + (A)n Simple_repeat Simple_repeat 1 20 0 1181 128 14 112 chrX 152769405 152769701 -24204439 + L1MC3 LINE L1 7513 7779 -6 234 289 121 46 chrX 152769811 152769984 -24204156 - L2 LINE L2 -216 3056 2871 212 77 26 0 chrX 152770599 152770638 -24203502 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 456 275 28 21 chrX 152771615 152771757 -24202383 + MIR SINE MIR 26 168 -94 587 283 120 21 chrX 152771796 152772029 -24202111 - MIR SINE MIR -6 256 1 243 0 0 0 chrX 152773658 152773685 -24200455 + (TA)n Simple_repeat Simple_repeat 2 28 0 455 119 12 0 chrX 152775889 152775973 -24198167 + L1MB8 LINE L1 6093 6177 -1 339 238 111 20 chrX 152775992 152776136 -24198004 + MIR SINE MIR 25 176 -32 68 48 0 0 chrX 152776677 152776780 -24197360 + AT_rich Low_complexity Low_complexity 1 103 0 510 263 83 83 chrX 152777075 152777425 -24196715 + L1ME4a LINE L1 5671 6020 -101 184 244 0 0 chrX 152778110 152778151 -24195989 + L2 LINE L2 3273 3313 0 229 259 17 17 chrX 152778287 152778345 -24195795 - tRNA-Ile-ATT tRNA tRNA -13 64 7 819 232 26 0 chrX 152778432 152778622 -24195518 + L1MC4 LINE L1 7288 7482 -560 183 330 176 11 chrX 152779271 152779362 -24194778 + L2 LINE L2 3156 3261 -11 1449 283 188 24 chrX 152782432 152783470 -24190670 + L2 LINE L2 2103 3312 -1 204 146 0 24 chrX 152785848 152785889 -24188251 + MER5A DNA MER1_type 79 118 -71 352 165 266 9 chrX 152786006 152786115 -24188025 - L1MD2 LINE L1 -19 6340 6204 1952 130 3 17 chrX 152786830 152787130 -24187010 - AluSx SINE Alu -16 296 1 203 341 0 24 chrX 152787592 152787677 -24186463 + MIR SINE MIR 57 139 -123 857 318 76 47 chrX 152787788 152788540 -24185600 + L2 LINE L2 2113 2886 -428 2271 110 0 16 chrX 152789183 152789500 -24184640 - AluSx SINE Alu 0 312 1 3116 176 22 0 chrX 152789577 152790127 -24184013 + MER68 LTR ERV1 1 562 0 393 273 73 0 chrX 152790240 152790460 -24183680 + L1MC/D LINE L1 5263 5498 -2310 376 180 10 100 chrX 152790461 152790487 -24183653 + MLT1D LTR MaLR 1 28 -477 2068 120 7 7 chrX 152790487 152790787 -24183353 + AluSx SINE Alu 1 300 -12 376 180 10 100 chrX 152790787 152790860 -24183280 + MLT1D LTR MaLR 28 91 -414 235 291 102 87 chrX 152791287 152791552 -24182588 - L2 LINE L2 -4 3268 3000 663 183 4 10 chrX 152791899 152792153 -24181987 + AluJo SINE Alu 2 308 -4 783 279 81 66 chrX 152792913 152793505 -24180635 + L1MEd LINE L1 457 1057 -5062 185 313 27 61 chrX 152793660 152793807 -24180333 - L2 LINE L2 -1385 1929 1788 2310 88 13 3 chrX 152794272 152794577 -24179563 + AluSc SINE Alu 1 308 -1 879 247 75 4 chrX 152795563 152795790 -24178350 - MIR SINE MIR -6 256 14 836 228 134 5 chrX 152796072 152796296 -24177844 + MER112 DNA MER1_type 3 255 -1 244 329 29 7 chrX 152797142 152797279 -24176861 + L2 LINE L2 1486 1625 -1689 190 283 22 0 chrX 152797499 152797545 -24176595 - L2 LINE L2 -38 3234 3188 180 326 95 11 chrX 152799243 152799338 -24174802 - L2 LINE L2 -352 2962 2860 2328 93 3 7 chrX 152799738 152800040 -24174100 - AluSq SINE Alu -7 306 6 41 27 0 40 chrX 152802182 152802221 -24171919 + AT_rich Low_complexity Low_complexity 1 37 -34 2120 101 3 7 chrX 152802221 152802509 -24171631 - AluSx SINE Alu -25 287 1 41 27 0 40 chrX 152802509 152802543 -24171597 + AT_rich Low_complexity Low_complexity 37 71 0 292 370 16 8 chrX 152805208 152805335 -24168805 + MIR3 SINE MIR 31 158 -50 521 203 78 8 chrX 152805388 152805516 -24168624 + MER58C DNA MER1_type 79 215 0 238 349 67 26 chrX 152806587 152806782 -24167358 + L2 LINE L2 2850 3052 -261 344 258 45 0 chrX 152807135 152807224 -24166916 - MIR SINE MIR -32 230 138 255 262 0 48 chrX 152807284 152807368 -24166772 + L1MD2 LINE L1 5570 5649 -472 901 134 67 49 chrX 152807706 152807870 -24166270 - AluJb SINE Alu -1 311 145 2303 105 3 0 chrX 152807881 152808176 -24165964 - AluSx SINE Alu -16 296 1 1438 129 112 65 chrX 152808190 152808468 -24165672 - AluJo SINE Alu -21 291 1 1491 219 116 51 chrX 152808567 152808672 -24165468 + L1MD2 LINE L1 5784 5881 -478 1821 154 20 7 chrX 152808672 152808965 -24165175 - AluJb SINE Alu -15 297 1 1491 219 116 51 chrX 152808965 152809385 -24164755 + L1MD2 LINE L1 5881 6343 -16 200 293 146 41 chrX 152809426 152809549 -24164591 + MIR SINE MIR 20 155 -107 225 146 0 0 chrX 152810443 152810491 -24163649 + (TC)n Simple_repeat Simple_repeat 1 48 0 266 325 61 57 chrX 152811144 152811356 -24162784 - L2 LINE L2 -839 2475 2263 * 290 302 265 12 chrX 152811354 152811682 -24162458 + L2 LINE L2 2326 2736 -578 2204 88 14 0 chrX 152811751 152812035 -24162105 + AluSq SINE Alu 1 288 -25 216 0 0 0 chrX 152812049 152812073 -24162067 + (CAT)n Simple_repeat Simple_repeat 2 25 0 1515 132 96 4 chrX 152812073 152812353 -24161787 + L1MA8 LINE L1 5986 6291 0 1985 138 7 0 chrX 152812359 152812642 -24161498 + AluJo SINE Alu 1 285 -27 687 293 140 36 chrX 152812667 152813147 -24160993 + L2 LINE L2 2766 3271 -1 1932 115 24 31 chrX 152813590 152813878 -24160262 + AluSx SINE Alu 1 286 -26 579 82 58 53 chrX 152813914 152814085 -24160055 + GA-rich Low_complexity Low_complexity 1 172 0 261 0 0 0 chrX 152814584 152814613 -24159527 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 366 329 158 36 chrX 152816753 152817525 -24156615 + L2 LINE L2 1861 2726 -588 278 301 62 35 chrX 152817736 152817849 -24156291 + L2 LINE L2 2950 3065 -207 200 268 36 18 chrX 152817987 152818043 -24156097 + L2 LINE L2 3211 3267 -5 211 272 111 12 chrX 152818398 152818479 -24155661 - L2 LINE L2 -5 3267 3179 371 323 185 9 chrX 152818523 152818755 -24155385 - L2 LINE L2 0 3313 3041 236 291 102 53 chrX 152818769 152819034 -24155106 - L2 LINE L2 -153 3119 2842 436 258 53 20 chrX 152819759 152819910 -24154230 - L1ME4a LINE L1 -3 6118 5963 1251 283 188 20 chrX 152820134 152820734 -24153406 - L3 LINE CR1 -250 1327 627 204 295 65 93 chrX 152820893 152821032 -24153108 - L3 LINE CR1 -1258 319 185 1905 176 0 0 chrX 152822767 152823068 -24151072 - AluJb SINE Alu -6 306 6 1839 126 28 25 chrX 152825409 152825695 -24148445 - AluSx SINE Alu -19 293 7 328 280 76 68 chrX 152826313 152826469 -24147671 + L1ME LINE L1 5118 5271 -875 2096 134 0 0 chrX 152826469 152826760 -24147380 + AluSx SINE Alu 1 291 -21 207 100 0 0 chrX 152826764 152826794 -24147346 + (CA)n Simple_repeat Simple_repeat 2 31 0 328 280 76 68 chrX 152826794 152826896 -24147244 + L1ME LINE L1 5273 5383 -763 1976 151 3 3 chrX 152826897 152827195 -24146945 - AluJb SINE Alu -14 298 1 225 130 148 19 chrX 152827285 152827339 -24146801 + L1ME LINE L1 5518 5578 -543 2328 84 3 3 chrX 152827735 152828032 -24146108 + AluSx SINE Alu 1 297 -15 997 55 86 0 chrX 152829140 152829268 -24144872 + MER85 DNA T2_type 1 139 0 200 314 29 0 chrX 152829444 152829514 -24144626 + L2 LINE L2 3143 3214 -58 1211 160 75 26 chrX 152830260 152830528 -24143612 - L1MB8 LINE L1 -3 6175 5895 371 270 126 0 chrX 152830726 152830837 -24143303 + MIR SINE MIR 1 125 -137 25 0 0 0 chrX 152830941 152830966 -24143174 + AT_rich Low_complexity Low_complexity 1 25 0 302 273 83 8 chrX 152831535 152831656 -24142484 - MIR3 SINE MIR -36 172 43 322 289 111 0 chrX 152831827 152831917 -24142223 + L2 LINE L2 3214 3313 0 864 166 50 15 chrX 152832830 152833029 -24141111 - MER20B DNA MER1_type 0 783 578 293 176 73 15 chrX 152833039 152833107 -24141033 - MER20B DNA MER1_type -710 73 2 612 185 226 0 chrX 152833423 152833569 -24140571 - MER58A DNA MER1_type -1 223 45 2076 139 0 10 chrX 152833949 152834252 -24139888 - AluSx SINE Alu -12 300 1 204 40 0 0 chrX 152835765 152835790 -24138350 + (CA)n Simple_repeat Simple_repeat 1 25 0 * 240 35 0 0 chrX 152835789 152835818 -24138322 + (TC)n Simple_repeat Simple_repeat 1 29 0 1403 166 70 73 chrX 152835851 152836195 -24137945 - MER2 DNA MER2_type -1 343 1 649 271 89 8 chrX 152836502 152836749 -24137391 - L1ME3A LINE L1 -223 5947 5681 382 103 76 0 chrX 152836869 152837014 -24137126 + (TA)n Simple_repeat Simple_repeat 2 157 0 23 219 0 0 chrX 152837247 152837288 -24136852 + GC_rich Low_complexity Low_complexity 1 41 0 269 204 11 86 chrX 152838862 152838955 -24135185 + MIR SINE MIR 65 150 -58 370 131 65 0 chrX 152839637 152839805 -24134335 + (TA)n Simple_repeat Simple_repeat 2 180 0 2134 178 48 37 chrX 152839917 152840377 -24133763 - MLT1C LTR MaLR -2 465 1 553 285 122 5 chrX 152840873 152841087 -24133053 - MIR SINE MIR -12 250 12 696 278 112 37 chrX 152841411 152841814 -24132326 + MARNA DNA Mariner 12 444 -142 2715 191 108 84 chrX 152842601 152843009 -24131131 + L1ME1 LINE L1 3923 4320 -1826 1772 177 0 20 chrX 152843009 152843303 -24130837 + AluJo SINE Alu 1 288 -24 2715 191 108 84 chrX 152843303 152843457 -24130683 + L1ME1 LINE L1 4320 4469 -1677 2409 82 3 0 chrX 152843457 152843749 -24130391 + AluSp SINE Alu 1 293 -20 351 0 0 0 chrX 152843754 152843793 -24130347 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 2715 191 108 84 chrX 152843793 152844283 -24129857 + L1ME1 LINE L1 4472 5007 -1139 2317 181 92 54 chrX 152844284 152844879 -24129261 - MLT1E1 LTR MaLR -2 652 35 1760 195 49 29 chrX 152844894 152845754 -24128386 + L1ME1 LINE L1 5002 5903 -263 355 310 84 0 chrX 152845750 152845963 -24128177 + L1M4 LINE L1 2737 2967 -3179 * 427 215 141 12 chrX 152846007 152846170 -24127970 + L1MC4a LINE L1 5848 6031 -1777 247 185 152 73 chrX 152846187 152846365 -24127775 + L1MC4a LINE L1 6073 6264 -1544 245 202 43 75 chrX 152846351 152846445 -24127695 + L1M4 LINE L1 3217 3307 -2839 * 662 262 84 42 chrX 152846487 152846846 -24127294 + L1M4 LINE L1 3519 3892 -2254 721 147 9 9 chrX 152846854 152846970 -24127170 + FLAM_C SINE Alu 16 131 -12 242 220 0 0 chrX 152847052 152847111 -24127029 + L1M4 LINE L1 4000 4058 -2088 321 255 46 72 chrX 152847112 152847265 -24126875 - MER5A DNA MER1_type -40 149 1 * 422 208 173 71 chrX 152847231 152847399 -24126741 + MER5A DNA MER1_type 4 188 -1 527 216 82 22 chrX 152847408 152847542 -24126598 + MER5B DNA MER1_type 19 160 -18 464 292 139 29 chrX 152847794 152848003 -24126137 + MIR SINE MIR 27 258 -4 967 159 183 8 chrX 152848077 152848328 -24125812 + MER33 DNA MER1_type 29 323 -1 307 308 75 45 chrX 152848376 152848509 -24125631 - MER5A DNA MER1_type -6 183 47 337 216 95 52 chrX 152850568 152850684 -24123456 - MIR SINE MIR -110 152 32 995 227 40 13 chrX 152851235 152851460 -24122680 - MIR SINE MIR -3 259 29 429 243 173 6 chrX 152852523 152852696 -24121444 + L2 LINE L2 3111 3312 -1 568 280 76 9 chrX 152852838 152853049 -24121091 - MARNA DNA Mariner -192 394 170 429 364 32 0 chrX 152853172 152853326 -24120814 + MIR3 SINE MIR 45 203 -5 2326 104 0 0 chrX 152854963 152855271 -24118869 + AluSx SINE Alu 1 308 -4 185 156 0 22 chrX 152855466 152855511 -24118629 + (TA)n Simple_repeat Simple_repeat 2 45 0 2347 96 0 7 chrX 152856379 152856682 -24117458 + AluSx SINE Alu 1 301 -11 360 0 0 0 chrX 152856783 152856823 -24117317 + (TG)n Simple_repeat Simple_repeat 2 41 0 447 276 66 0 chrX 152857447 152857596 -24116544 + MIR3 SINE MIR 21 179 -54 575 296 39 0 chrX 152857690 152857869 -24116271 + MIR SINE MIR 8 193 -69 2265 215 29 42 chrX 152857967 152858136 -24116004 + L1ME1 LINE L1 5551 5721 -445 2403 74 3 0 chrX 152858136 152858451 -24115689 + AluSc SINE Alu 1 309 0 2265 215 29 42 chrX 152858451 152858900 -24115240 + L1ME1 LINE L1 5721 6161 -5 2356 117 0 0 chrX 152858906 152859213 -24114927 - AluSx SINE Alu -5 307 1 2276 89 0 0 chrX 152859229 152859509 -24114631 + AluSg SINE Alu 26 305 -5 231 128 0 0 chrX 152859700 152859739 -24114401 - L1ME1 LINE L1 -95 6071 6033 199 204 37 19 chrX 152859773 152859827 -24114313 + MIR3 SINE MIR 11 65 -143 2108 133 7 16 chrX 152860664 152860972 -24113168 + AluSx SINE Alu 1 305 -7 3541 196 36 15 chrX 152861027 152861898 -24112242 + L1MB2 LINE L1 4395 5287 -859 2570 60 0 0 chrX 152861898 152862199 -24111941 + AluY SINE Alu 1 301 -10 3541 196 36 15 chrX 152862199 152862234 -24111906 + L1MB2 LINE L1 5287 5320 -826 4198 137 21 44 chrX 152862235 152862311 -24111829 + L1MB2 LINE L1 5413 5489 -682 1835 179 7 7 chrX 152862311 152862619 -24111521 + AluJb SINE Alu 1 308 -4 4198 137 21 44 chrX 152862619 152863053 -24111087 + L1MB2 LINE L1 5489 5902 -269 2171 120 0 16 chrX 152863053 152863361 -24110779 + AluSx SINE Alu 1 303 -9 4198 137 21 44 chrX 152863361 152863617 -24110523 + L1MB2 LINE L1 5902 6162 -9 1801 162 45 3 chrX 152864646 152864998 -24109142 - L1MB7 LINE L1 -20 6164 5798 1372 135 70 9 chrX 152864999 152865451 -24108689 - MER21A LTR ERV1 -363 500 1 2497 170 20 28 chrX 152865452 152865945 -24108195 - MER21A-int LTR ERV1 -1 4190 3702 2660 169 22 48 chrX 152865950 152866486 -24107654 - L1MB7 LINE L1 -370 5814 5265 2289 86 7 23 chrX 152866486 152866788 -24107352 - AluSq SINE Alu -15 298 2 2660 169 22 48 chrX 152866788 152866942 -24107198 - L1MB7 LINE L1 -919 5265 5108 1875 97 47 36 chrX 152866942 152867251 -24106889 - AluY SINE Alu 0 312 1 2660 169 22 48 chrX 152867251 152867625 -24106515 - L1MB7 LINE L1 -1076 5108 4767 442 315 27 20 chrX 152867707 152867922 -24106218 - MIR SINE MIR -47 215 4 1609 95 12 12 chrX 152867939 152868182 -24105958 + L1MA8 LINE L1 5782 6024 -267 230 322 0 35 chrX 152868684 152868771 -24105369 - L2 LINE L2 -3 3269 3186 439 268 55 0 chrX 152869216 152869343 -24104797 + MER94 DNA DNA 1 134 0 1641 199 129 19 chrX 152869432 152869850 -24104290 - MLT1C LTR MaLR -3 464 1 220 268 155 0 chrX 152870635 152870706 -24103434 - L2 LINE L2 0 3313 3232 1401 189 50 58 chrX 152870919 152871031 -24103109 + MLT1C LTR MaLR 56 167 -300 207 69 0 0 chrX 152871031 152871060 -24103080 + (TG)n Simple_repeat Simple_repeat 2 30 0 2041 127 0 7 chrX 152871060 152871352 -24102788 - AluY SINE Alu -21 290 1 1401 189 50 58 chrX 152871352 152871635 -24102505 + MLT1C LTR MaLR 165 449 -18 476 296 28 13 chrX 152872280 152872448 -24101692 - MIR SINE MIR -63 145 15 210 37 0 0 chrX 152872544 152872571 -24101569 + (T)n Simple_repeat Simple_repeat 1 27 0 546 165 34 80 chrX 152873700 152873876 -24100264 + MER53 DNA DNA 3 170 -19 188 266 23 78 chrX 152874143 152874271 -24099869 + L2 LINE L2 3147 3267 -5 207 0 0 0 chrX 152874278 152874301 -24099839 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 524 279 8 0 chrX 152874361 152874483 -24099657 + L2 LINE L2 3187 3309 -4 278 232 14 43 chrX 152875540 152875609 -24098531 + L2 LINE L2 3206 3272 0 291 286 63 63 chrX 152876093 152876219 -24097921 + MIR SINE MIR 110 235 -27 271 330 72 0 chrX 152876224 152876269 -24097871 + L2 LINE L2 3158 3198 -74 393 22 0 0 chrX 152876269 152876315 -24097825 + (TC)n Simple_repeat Simple_repeat 1 46 0 271 330 72 0 chrX 152876315 152876366 -24097774 + L2 LINE L2 3198 3261 -11 1443 162 0 0 chrX 152876369 152876597 -24097543 + AluSx SINE Alu 56 283 -29 924 157 22 16 chrX 152877018 152877203 -24096937 + MER53 DNA DNA 1 186 -3 562 221 60 30 chrX 152877697 152877865 -24096275 - MIR SINE MIR -56 206 35 337 280 84 53 chrX 152877964 152878189 -24095951 + L2 LINE L2 2685 2916 -398 305 298 205 12 chrX 152878530 152878691 -24095449 - MLT1L LTR MaLR -56 559 368 216 238 95 95 chrX 152878881 152879049 -24095091 + L2 LINE L2 3044 3211 -61 609 222 34 111 chrX 152879873 152880107 -24094033 + MIR SINE MIR 28 243 -19 564 42 0 0 chrX 152880225 152880296 -24093844 + (TCCA)n Simple_repeat Simple_repeat 1 71 0 427 167 93 46 chrX 152880303 152880411 -24093729 - L2 LINE L2 0 3313 3201 2727 110 54 12 chrX 152882316 152882725 -24091415 - MSTB LTR MaLR 0 426 1 2608 150 10 53 chrX 152883342 152883640 -24090500 - MLT1C LTR MaLR 0 467 197 2384 97 3 0 chrX 152883640 152883940 -24090200 - AluSx SINE Alu -11 301 1 2608 150 10 53 chrX 152883940 152884129 -24090011 - MLT1C LTR MaLR -270 197 1 788 294 17 26 chrX 152885218 152885449 -24088691 - MIR SINE MIR -2 260 32 274 260 48 77 chrX 152885493 152885597 -24088543 - MIR3 SINE MIR -35 173 73 4169 156 53 28 chrX 152886289 152887144 -24086996 - L1MB5 LINE L1 -8 6166 5291 360 325 165 5 chrX 152887195 152887407 -24086733 - L3 LINE CR1 -168 1409 1164 475 320 210 7 chrX 152887510 152887810 -24086330 - L2 LINE L2 -24 3289 2929 1572 301 82 57 chrX 152887848 152889167 -24084973 + L2 LINE L2 1900 3259 -13 450 0 0 0 chrX 152889299 152889349 -24084791 + (TA)n Simple_repeat Simple_repeat 2 51 0 2310 98 10 0 chrX 152889349 152889517 -24084623 - AluSx SINE Alu -14 298 124 369 0 0 0 chrX 152889517 152889558 -24084582 + (TG)n Simple_repeat Simple_repeat 2 42 0 2310 98 10 0 chrX 152889558 152889684 -24084456 - AluSx SINE Alu -188 124 1 513 218 191 7 chrX 152890474 152890621 -24083519 + MIR SINE MIR 26 199 -63 253 270 32 0 chrX 152890812 152890875 -24083265 - MIR SINE MIR -160 102 38 364 279 107 0 chrX 152892265 152892405 -24081735 + MER45C DNA AcHobo 397 551 -402 248 394 56 6 chrX 152892641 152892843 -24081297 + MIR SINE MIR 34 244 -18 2977 64 0 0 chrX 152893000 152893374 -24080766 + L1PA13 LINE L1 5790 6163 0 23 0 0 0 chrX 152893374 152893397 -24080743 + AT_rich Low_complexity Low_complexity 1 23 0 2638 120 41 14 chrX 152893495 152893912 -24080228 + MSTA LTR MaLR 1 428 0 233 229 0 83 chrX 152894243 152894339 -24079801 + L1MC4 LINE L1 6616 6703 -1339 247 185 76 65 chrX 152894348 152894440 -24079700 - MLT2C1 LTR ERVL -48 349 257 1575 188 69 12 chrX 152894550 152894885 -24079255 - MLT2C1 LTR ERVL -43 354 1 835 249 5 50 chrX 152896171 152896183 -24077957 - MIR SINE MIR -51 211 200 2801 186 40 2 chrX 152896183 152896759 -24077381 - L1MB7 LINE L1 0 6184 5587 835 249 5 50 chrX 152896759 152896967 -24077173 - MIR SINE MIR -62 200 1 261 57 0 0 chrX 152897818 152897853 -24076287 + (TG)n Simple_repeat Simple_repeat 2 36 0 2079 124 129 46 chrX 152899328 152899501 -24074639 + MSTA LTR MaLR 1 158 -270 2358 92 3 13 chrX 152899501 152899816 -24074324 + AluSq SINE Alu 1 312 -1 2079 124 129 46 chrX 152899816 152900037 -24074103 + MSTA LTR MaLR 158 428 0 359 221 142 8 chrX 152900135 152900262 -24073878 - L1MC4a LINE L1 -1982 5826 5683 270 239 0 68 chrX 152900382 152900470 -24073670 + MER5B DNA MER1_type 87 168 -10 442 290 45 54 chrX 152900484 152900798 -24073342 - L1MC4a LINE L1 -537 5584 5274 311 287 23 69 chrX 152901248 152901464 -24072676 - L1MC4 LINE L1 -1 8041 7836 855 224 16 31 chrX 152901506 152901761 -24072379 - L1ME2 LINE L1 -9 6155 5905 353 250 0 52 chrX 152901773 152901869 -24072271 + L1MC4 LINE L1 6615 6705 -1337 * 371 271 24 0 chrX 152901792 152901877 -24072263 - L1MC4 LINE L1 -1342 6700 6614 349 189 11 84 chrX 152901881 152901976 -24072164 + L1MC4 LINE L1 6615 6702 -1340 339 224 0 82 chrX 152901944 152902042 -24072098 - L1MC4 LINE L1 -1339 6703 6614 * 350 250 11 33 chrX 152902038 152902130 -24072010 + L1MC4 LINE L1 6614 6703 -1339 339 234 11 43 chrX 152902058 152902152 -24071988 - L1MC4 LINE L1 -1338 6704 6614 * 571 174 47 94 chrX 152902183 152902444 -24071696 - L1MD2 LINE L1 -252 5912 5689 1784 92 41 26 chrX 152902444 152902623 -24071517 - L1PA15 LINE L1 -4 6161 5975 2417 88 0 0 chrX 152902623 152902931 -24071209 - AluSx SINE Alu -4 308 1 1784 92 41 26 chrX 152902931 152903022 -24071118 - L1PA15 LINE L1 -190 5975 5887 571 174 47 94 chrX 152903022 152903042 -24071098 - L1MD2 LINE L1 -475 5689 5670 343 343 44 17 chrX 152903092 152903273 -24070867 - L1M4 LINE L1 -909 5237 5052 2380 91 3 0 chrX 152903277 152903574 -24070566 - AluSp SINE Alu -15 298 1 272 297 35 7 chrX 152903580 152903725 -24070415 - L1P LINE L1 -1097 5049 4901 200 163 23 0 chrX 152903894 152903937 -24070203 + CT-rich Low_complexity Low_complexity 2 45 0 288 252 39 45 chrX 152903939 152904094 -24070046 - L1M4 LINE L1 -1430 4716 4563 488 242 203 23 chrX 152904433 152904676 -24069464 + L2 LINE L2 2791 3068 -245 1391 139 42 68 chrX 152904821 152905131 -24069009 + MLT2C1 LTR ERVL 1 302 -95 335 280 156 13 chrX 152906919 152907226 -24066914 - L2 LINE L2 -1250 2064 1714 190 133 0 0 chrX 152908630 152908660 -24065480 + MIR SINE MIR 119 148 -60 231 146 0 0 chrX 152910217 152910258 -24063882 + (CAG)n Simple_repeat Simple_repeat 3 43 0 265 330 176 23 chrX 152911095 152911401 -24062739 + L2 LINE L2 2919 3271 -1 197 385 17 34 chrX 152911813 152911930 -24062210 - MIR SINE MIR -134 128 14 206 282 14 42 chrX 152912335 152912406 -24061734 + L2 LINE L2 3180 3248 -65 1162 302 37 41 chrX 152913202 152913692 -24060448 + L3 LINE CR1 801 1288 -289 324 260 58 10 chrX 152913987 152914091 -24060049 - MIR SINE MIR -75 133 25 396 203 13 8 chrX 152914868 152914968 -24059172 - MIR SINE MIR -34 174 72 372 253 6 19 chrX 152916581 152916739 -24057401 + G-rich Low_complexity Low_complexity 3 158 0 211 375 0 0 chrX 152917191 152917271 -24056869 + L3 LINE CR1 1494 1573 -4 273 197 61 30 chrX 152917518 152917584 -24056556 - L2 LINE L2 -2 3311 3244 187 350 56 33 chrX 152919025 152919205 -24054935 - L2 LINE L2 -18 3254 3071 335 289 30 28 chrX 152919374 152919549 -24054591 - MIR SINE MIR -64 198 33 195 42 0 0 chrX 152920153 152920177 -24053963 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 184 256 0 23 chrX 152920779 152920822 -24053318 - L2 LINE L2 -4 3268 3227 847 270 18 18 chrX 152920897 152921119 -24053021 - MIR SINE MIR -13 249 28 220 375 62 26 chrX 152922649 152922841 -24051299 + L2 LINE L2 2871 3069 -203 193 299 23 46 chrX 152922888 152922975 -24051165 + L2 LINE L2 3187 3271 -1 786 176 36 95 chrX 152924263 152924485 -24049655 + MER3 DNA MER1_type 1 209 0 791 303 29 0 chrX 152924490 152924731 -24049409 + MIR SINE MIR 7 254 -8 216 316 35 0 chrX 152924813 152924870 -24049270 - L3 LINE CR1 -487 1090 1032 22 0 0 0 chrX 152924886 152924908 -24049232 + AT_rich Low_complexity Low_complexity 1 22 0 943 202 44 40 chrX 152924929 152925157 -24048983 - MIR SINE MIR -10 252 24 2491 96 0 3 chrX 152925417 152925730 -24048410 + AluSx SINE Alu 1 312 0 183 80 0 0 chrX 152926439 152926464 -24047676 + (ATG)n Simple_repeat Simple_repeat 3 27 0 907 281 0 30 chrX 152926465 152926728 -24047412 - MIR SINE MIR -3 259 5 1042 287 13 52 chrX 152926905 152927368 -24046772 + HAL1 LINE L1 1 445 -2062 2210 120 0 0 chrX 152927765 152928082 -24046058 - AluSx SINE Alu 0 317 1 243 0 0 0 chrX 152928088 152928115 -24046025 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1878 139 3 17 chrX 152928119 152928407 -24045733 - AluJb SINE Alu -28 284 1 289 215 63 95 chrX 152928502 152928582 -24045558 + L1ME3A LINE L1 6008 6082 -88 2365 93 0 0 chrX 152928582 152928892 -24045248 - AluSg SINE Alu 0 310 1 289 215 63 95 chrX 152928892 152928969 -24045171 + L1ME3A LINE L1 6082 6160 -10 297 181 26 161 chrX 152929011 152929204 -24044936 + L1ME4a LINE L1 5950 6116 -5 317 257 196 28 chrX 152929377 152929556 -24044584 + L1ME3A LINE L1 5957 6165 -5 212 282 175 29 chrX 152930119 152930222 -24043918 - MIR3 SINE MIR -25 183 66 196 333 15 0 chrX 152930335 152930401 -24043739 - MIR SINE MIR -55 153 87 453 262 36 50 chrX 152931675 152931893 -24042247 + MIR SINE MIR 8 219 -43 377 250 45 11 chrX 152931953 152932041 -24042099 + MIR SINE MIR 16 106 -102 1030 207 0 9 chrX 152932044 152932261 -24041879 - L1M4 LINE L1 -2230 3916 3702 258 309 85 0 chrX 152932265 152932359 -24041781 + MIR3 SINE MIR 104 205 -3 1422 271 69 9 chrX 152932826 152933262 -24040878 + LTR16B LTR ERVL 1 462 -2 1986 189 6 11 chrX 152933375 152933389 -24040751 + MLT1A1 LTR MaLR 2 15 -350 660 38 0 0 chrX 152933389 152933468 -24040672 + MADE1 DNA Mariner 1 79 -1 1986 189 6 11 chrX 152933468 152933819 -24040321 + MLT1A1 LTR MaLR 15 365 0 185 391 9 26 chrX 152934612 152934727 -24039413 + MIR3 SINE MIR 85 197 -11 480 287 128 57 chrX 152935077 152935373 -24038767 - L2 LINE L2 -3 3269 2953 185 274 20 0 chrX 152935798 152935849 -24038291 - MIR3 SINE MIR -1 207 156 658 253 98 17 chrX 152935852 152935893 -24038247 + MER5A DNA MER1_type 1 37 -152 216 0 0 0 chrX 152935893 152935917 -24038223 + (CAG)n Simple_repeat Simple_repeat 2 25 0 658 253 98 17 chrX 152935917 152936049 -24038091 + MER5A DNA MER1_type 37 188 -1 236 171 0 0 chrX 152936050 152936091 -24038049 - MIR3 SINE MIR -48 160 120 613 293 38 32 chrX 152936656 152937014 -24037126 + MLT1K LTR MaLR 248 586 -2 259 225 169 0 chrX 152938040 152938111 -24036029 + L3 LINE CR1 1191 1273 -304 210 241 0 38 chrX 152938679 152938758 -24035382 + A-rich Low_complexity Low_complexity 3 78 0 203 176 0 0 chrX 152939216 152939250 -24034890 + (CAA)n Simple_repeat Simple_repeat 2 35 0 4052 152 19 36 chrX 152940461 152940974 -24033166 - L1MB3 LINE L1 -2 6181 5661 1187 50 11 22 chrX 152940974 152941156 -24032984 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1975 141 7 7 chrX 152941156 152941454 -24032686 - AluJo SINE Alu -14 298 1 4052 152 19 36 chrX 152941454 152941682 -24032458 - L1MB3 LINE L1 -520 5663 5452 666 248 136 5 chrX 152945673 152945887 -24028253 - MIR SINE MIR 0 262 21 518 240 84 20 chrX 152946873 152947140 -24027000 + MER46C DNA MER2_type 1 321 -17 362 256 68 34 chrX 152947168 152947402 -24026738 - MIR SINE MIR -17 245 4 846 153 0 0 chrX 152947635 152947759 -24026381 + FLAM_C SINE Alu 1 124 -9 358 206 167 0 chrX 152948541 152948643 -24025497 - MIR SINE MIR -21 241 123 300 296 164 5 chrX 152948692 152948881 -24025259 + MIR SINE MIR 9 227 -35 1491 240 118 80 chrX 152950171 152950722 -24023418 + MLT1E LTR MaLR 22 593 0 707 222 7 0 chrX 152950848 152950992 -24023148 + MIR SINE MIR 20 164 -98 241 295 0 16 chrX 152951293 152951354 -24022786 - tRNA-Ile-ATT tRNA tRNA -1 76 17 288 53 0 0 chrX 152951611 152951649 -24022491 + (CTG)n Simple_repeat Simple_repeat 3 40 0 267 31 0 0 chrX 152951925 152951957 -24022183 + (CTG)n Simple_repeat Simple_repeat 1 32 0 207 188 0 0 chrX 152952353 152952401 -24021739 + (TGG)n Simple_repeat Simple_repeat 1 48 0 287 67 44 0 chrX 152953268 152953313 -24020827 + GA-rich Low_complexity Low_complexity 3 49 0 297 0 0 0 chrX 152953317 152953350 -24020790 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 378 42 0 0 chrX 152953349 152953397 -24020743 + (GA)n Simple_repeat Simple_repeat 2 49 0 303 49 0 0 chrX 152953997 152954038 -24020102 + (CA)n Simple_repeat Simple_repeat 2 42 0 321 224 104 37 chrX 152954785 152954919 -24019221 - MER5B DNA MER1_type -7 171 29 370 274 0 0 chrX 152954973 152955079 -24019061 + MIR SINE MIR 86 191 -71 199 266 38 38 chrX 152955163 152955242 -24018898 - MIR3 SINE MIR -52 156 78 248 204 0 0 chrX 152955632 152955681 -24018459 + L2 LINE L2 3224 3272 0 192 182 0 0 chrX 152958365 152958409 -24015731 + GA-rich Low_complexity Low_complexity 1 44 0 367 263 50 0 chrX 152958826 152958925 -24015215 + MIR SINE MIR 42 145 -63 248 250 14 0 chrX 152960063 152960135 -24014005 + MIR SINE MIR 78 150 -58 305 228 43 33 chrX 152962920 152963012 -24011128 - MIR SINE MIR -45 217 125 312 120 0 0 chrX 152963134 152963184 -24010956 + (TCCC)n Simple_repeat Simple_repeat 4 53 0 381 300 42 80 chrX 152963281 152963518 -24010622 - MIR SINE MIR -20 242 15 204 40 0 0 chrX 152963592 152963617 -24010523 + (GA)n Simple_repeat Simple_repeat 2 26 0 1064 164 29 24 chrX 152963993 152964200 -24009940 - L1MA9 LINE L1 -162 6150 5943 826 146 19 25 chrX 152964216 152964374 -24009766 + L1MA9 LINE L1 6156 6312 0 528 153 119 0 chrX 152964448 152964566 -24009574 - MER69A DNA AcHobo -15 162 31 3332 142 77 9 chrX 152965045 152965614 -24008526 - L1MB5 LINE L1 -1 6173 5566 346 263 83 51 chrX 152966601 152966757 -24007383 - MIR SINE MIR -74 188 28 204 125 0 0 chrX 152967213 152967245 -24006895 + (GAA)n Simple_repeat Simple_repeat 2 33 0 461 249 65 6 chrX 152967338 152967513 -24006627 + MIR SINE MIR 64 251 -11 535 225 4 29 chrX 152968011 152968282 -24005858 + (TGG)n Simple_repeat Simple_repeat 1 264 0 358 301 150 0 chrX 152969137 152969415 -24004725 - L2 LINE L2 -316 2997 2680 980 187 131 0 chrX 152969618 152969816 -24004324 - MER58A DNA MER1_type 0 224 1 2829 28 0 0 chrX 152970074 152970398 -24003742 + L1PA2 LINE L1 5832 6155 0 190 302 0 19 chrX 152970924 152970977 -24003163 - L2 LINE L2 -21 3251 3200 297 224 24 24 chrX 152971257 152971342 -24002798 + GA-rich Low_complexity Low_complexity 2 86 0 215 167 0 0 chrX 152972433 152972475 -24001665 - MIR SINE MIR -110 152 111 310 298 53 23 chrX 152972942 152973073 -24001067 + MIR SINE MIR 19 153 -109 661 263 63 0 chrX 152974577 152974767 -23999373 + MIR SINE MIR 61 262 0 216 279 47 23 chrX 152974792 152974878 -23999262 - MIR SINE MIR -90 118 31 365 319 26 73 chrX 152975616 152975929 -23998211 - MARNA DNA Mariner -212 374 77 234 311 14 0 chrX 152977922 152977996 -23996144 + MIR3 SINE MIR 111 185 -23 2951 206 73 7 chrX 152978364 152979412 -23994728 + L1MDa LINE L1 17 1441 -5099 1415 29 0 40 chrX 152979396 152979610 -23994530 + L1PA3 LINE L1 5966 6172 0 * 5467 207 37 21 chrX 152979610 152981717 -23992423 + L1MDa LINE L1 1425 3560 -2980 1418 113 5 9 chrX 152981717 152981938 -23992202 + L1MA4A LINE L1 6076 6295 -8 266 205 12 42 chrX 152981940 152981995 -23992145 + (TTA)n Simple_repeat Simple_repeat 1 56 -105 200 29 0 59 chrX 152981995 152982029 -23992111 + (TTATA)n Simple_repeat Simple_repeat 4 35 0 266 205 12 42 chrX 152982029 152982139 -23992001 + (TTA)n Simple_repeat Simple_repeat 56 161 0 1925 218 77 59 chrX 152982157 152982901 -23991239 + L1MDa LINE L1 3542 4298 -2242 * 4688 184 37 10 chrX 152982898 152983042 -23991098 + L1MB5 LINE L1 4680 4819 -1355 2042 108 3 42 chrX 152983042 152983348 -23990792 - AluSx SINE Alu -18 294 1 4688 184 37 10 chrX 152983348 152984606 -23989534 + L1MB5 LINE L1 4819 6120 -54 3891 169 35 11 chrX 152984625 152985365 -23988775 + L1MD1 LINE L1 5474 6231 -11 1301 233 37 0 chrX 152985365 152985665 -23988475 + L1MDa LINE L1 4278 4588 -1952 18261 204 16 16 chrX 152985665 152987470 -23986670 + L1PA15 LINE L1 1169 2972 -3844 2299 105 0 3 chrX 152987470 152987766 -23986374 - AluSg1 SINE Alu -14 295 1 18261 204 16 16 chrX 152987766 152991599 -23982541 + L1PA15 LINE L1 2972 6815 -1 4321 181 58 59 chrX 152991587 152992717 -23981423 + L1MDa LINE L1 4552 5721 -915 * 1938 105 41 0 chrX 152992717 152992984 -23981156 + AluSx SINE Alu 35 312 0 4321 181 58 59 chrX 152992984 152993361 -23980779 + L1MDa LINE L1 5721 6097 -539 24 0 0 0 chrX 152993382 152993406 -23980734 + AT_rich Low_complexity Low_complexity 1 24 0 550 243 28 0 chrX 152993414 152993558 -23980582 + L1MD2 LINE L1 6196 6343 -16 2306 151 136 19 chrX 152995695 152996113 -23978027 + MLT1C LTR MaLR 1 467 0 221 339 25 59 chrX 152996917 152997035 -23977105 + MIR SINE MIR 29 142 -120 207 337 11 11 chrX 152997067 152997156 -23976984 - MIR SINE MIR -18 244 156 297 298 175 12 chrX 152997173 152997344 -23976796 + L2 LINE L2 3070 3268 -4 3731 155 42 12 chrX 152997617 152998261 -23975879 + L1MB8 LINE L1 5507 6169 -9 303 28 0 0 chrX 152999345 152999381 -23974759 + (TC)n Simple_repeat Simple_repeat 2 37 0 360 0 0 0 chrX 152999599 152999639 -23974501 + (CA)n Simple_repeat Simple_repeat 1 40 0 277 260 292 10 chrX 152999908 153000004 -23974136 + MIR SINE MIR 24 146 -62 347 231 70 140 chrX 153000218 153000271 -23973869 - MIR3 SINE MIR -6 202 147 1959 125 0 28 chrX 153000271 153000559 -23973581 + AluSx SINE Alu 1 280 -32 347 231 70 140 chrX 153000559 153000691 -23973449 - MIR3 SINE MIR -61 147 30 208 337 35 0 chrX 153000884 153000970 -23973170 + MIR3 SINE MIR 95 183 -25 28796 37 38 2 chrX 153001536 153005061 -23969079 + L1PA3 LINE L1 12 3663 -2483 8234 22 1 0 chrX 153005077 153005978 -23968162 + L1PA3 LINE L1 5254 6155 0 1903 218 16 8 chrX 153005983 153006369 -23967771 + L1MB5 LINE L1 5777 6165 -9 807 188 0 7 chrX 153006552 153006690 -23967450 + FRAM SINE Alu 1 137 -39 998 75 5 43 chrX 153006692 153006702 -23967438 + (GAAA)n Simple_repeat Simple_repeat 1 188 0 998 75 5 43 chrX 153006702 153006888 -23967252 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 2439 211 55 23 chrX 153007424 153008026 -23966114 - L1ME1 LINE L1 -5 6161 5541 225 263 0 53 chrX 153008749 153008825 -23965315 + MIR3 SINE MIR 1 72 -136 556 295 44 6 chrX 153009018 153009201 -23964939 - MIR SINE MIR -14 248 59 1963 166 101 44 chrX 153009963 153010420 -23963720 - Charlie4a DNA MER1_type -25 483 1 716 237 68 6 chrX 153010552 153010729 -23963411 + MIR SINE MIR 46 233 -29 800 230 33 47 chrX 153010901 153011114 -23963026 - MER63A DNA MER1_type 0 210 1 266 241 42 96 chrX 153012959 153013125 -23961015 - MIR3 SINE MIR -29 179 23 183 292 28 28 chrX 153013264 153013336 -23960804 - L2 LINE L2 -3 3310 3239 902 264 31 24 chrX 153013494 153013748 -23960392 - MIR SINE MIR -5 257 2 1503 116 65 0 chrX 153013768 153013984 -23960156 - MER30 DNA MER1_type 0 230 1 22 0 0 0 chrX 153014831 153014853 -23959287 + AT_rich Low_complexity Low_complexity 1 22 0 213 65 0 0 chrX 153015588 153015619 -23958521 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1566 180 0 37 chrX 153015622 153015916 -23958224 - AluJb SINE Alu -29 283 1 252 0 0 0 chrX 153016919 153016947 -23957193 + (A)n Simple_repeat Simple_repeat 1 28 0 942 344 118 28 chrX 153017046 153017732 -23956408 + L3 LINE CR1 245 992 -585 190 276 0 112 chrX 153017845 153017961 -23956179 - MIR SINE MIR -85 123 21 9976 27 0 0 chrX 153019908 153021787 -23952353 - L1PA2 LINE L1 0 6155 4276 7513 30 0 0 chrX 153021787 153022653 -23951487 + L1PA2 LINE L1 3405 4270 -1876 2093 183 45 43 chrX 153023131 153023596 -23950544 - MLT1C LTR MaLR 0 467 2 320 325 63 29 chrX 153023762 153023968 -23950172 + L2 LINE L2 2569 2781 -533 306 241 0 51 chrX 153023968 153024047 -23950093 + L2 LINE L2 3192 3266 -6 194 386 14 55 chrX 153024016 153024161 -23949979 - L2 LINE L2 -179 3093 2955 * 1362 62 0 0 chrX 153024587 153024764 -23949376 + (TTC)n Simple_repeat Simple_repeat 3 179 0 489 314 22 35 chrX 153024951 153025180 -23948960 + L3 LINE CR1 1345 1570 -7 467 282 49 49 chrX 153025425 153025778 -23948362 + L1M4 LINE L1 4303 4659 -1487 712 128 18 0 chrX 153025891 153026000 -23948140 + L1MB2 LINE L1 6058 6168 -3 560 263 42 28 chrX 153026025 153026242 -23947898 + L1MD2 LINE L1 76 295 -6245 10467 197 41 14 chrX 153026291 153026702 -23947438 + L1MC1 LINE L1 2616 3014 -3319 1720 163 6 45 chrX 153026702 153027015 -23947125 + AluJo SINE Alu 6 306 -6 10467 197 41 14 chrX 153027015 153030200 -23943940 + L1MC1 LINE L1 3014 6316 -17 286 260 186 94 chrX 153030218 153030761 -23943379 + L1MD2 LINE L1 277 869 -5671 5606 225 39 13 chrX 153031146 153031600 -23942540 + L1MD2 LINE L1 991 1432 -5108 234 81 0 0 chrX 153031600 153031637 -23942503 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 5606 225 39 13 chrX 153031637 153032744 -23941396 + L1MD2 LINE L1 1432 2592 -3948 1032 181 16 0 chrX 153032744 153032926 -23941214 + AluJo SINE Alu 117 301 -11 4926 228 48 31 chrX 153032966 153033647 -23940493 + L1MD2 LINE L1 2637 3305 -3235 2098 127 3 3 chrX 153033647 153033939 -23940201 + AluSx SINE Alu 1 292 -20 4926 228 48 31 chrX 153033939 153034747 -23939393 + L1MD2 LINE L1 3305 4151 -2389 2233 238 32 12 chrX 153034743 153035344 -23938796 + L1MB7 LINE L1 3419 4031 -2115 * 803 203 59 7 chrX 153035348 153035501 -23938639 + MER8 DNA MER2_type 1 161 -78 662 146 0 0 chrX 153035504 153035600 -23938540 + Tigger2 DNA MER2_type 1038 1133 -1585 21 57 0 0 chrX 153036024 153036059 -23938081 + AT_rich Low_complexity Low_complexity 1 35 0 10796 118 14 9 chrX 153036102 153037678 -23936462 + Tigger2 DNA MER2_type 1134 2717 -1 333 0 0 0 chrX 153037679 153037716 -23936424 + (TG)n Simple_repeat Simple_repeat 2 38 0 2645 141 40 25 chrX 153037716 153038193 -23935947 + L1MA9 LINE L1 5798 6281 -31 5235 169 9 8 chrX 153038206 153039397 -23934743 + L1MB7 LINE L1 4981 6173 -11 259 288 8 16 chrX 153039398 153039523 -23934617 + L1MD2 LINE L1 4761 4884 -1656 248 168 35 0 chrX 153039501 153039571 -23934569 + L1PA10 LINE L1 6496 6566 0 * 2865 10 0 0 chrX 153039790 153040101 -23934039 + AluY SINE Alu 1 311 0 21 36 0 0 chrX 153040203 153040231 -23933909 + AT_rich Low_complexity Low_complexity 1 28 0 2805 212 67 30 chrX 153040356 153041781 -23932359 + L1MD2 LINE L1 4884 6751 -2 433 305 20 5 chrX 153041774 153041971 -23932169 + L1MC4 LINE L1 4733 4932 -1214 * 443 171 4 36 chrX 153041996 153042254 -23931886 + AluJo SINE Alu 5 311 -1 914 215 50 51 chrX 153042263 153045136 -23929004 + L1MC4 LINE L1 4942 7853 -142 360 0 0 0 chrX 153045136 153045176 -23928964 + (TG)n Simple_repeat Simple_repeat 1 40 0 914 215 50 51 chrX 153045176 153045319 -23928821 + L1MC4 LINE L1 7853 7995 0 484 241 35 18 chrX 153045648 153045818 -23928322 - MIR3 SINE MIR -29 179 7 191 354 24 47 chrX 153046472 153046599 -23927541 + MIR SINE MIR 25 148 -60 495 330 16 11 chrX 153046828 153047013 -23927127 - MIR3 SINE MIR -7 201 16 256 265 0 0 chrX 153047770 153047838 -23926302 + MIR SINE MIR 75 142 -66 243 305 16 62 chrX 153048578 153048706 -23925434 - MIR SINE MIR -70 192 71 303 113 0 0 chrX 153049472 153049525 -23924615 + (TG)n Simple_repeat Simple_repeat 1 53 0 391 247 65 26 chrX 153050981 153051135 -23923005 + MIR3 SINE MIR 31 190 -18 300 266 217 7 chrX 153053650 153053793 -23920347 - MIR3 SINE MIR -3 205 33 7807 26 0 2 chrX 153053860 153055433 -23918707 + L1PA5 LINE L1 4581 6151 -3 23 33 0 0 chrX 153058119 153058149 -23915991 + GC_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chrX 153059504 153059529 -23914611 + GC_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chrX 153059588 153059625 -23914515 + GC_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chrX 153060229 153060264 -23913876 + GC_rich Low_complexity Low_complexity 1 35 0 241 222 61 20 chrX 153060412 153060511 -23913629 + (CAGAGA)n Simple_repeat Simple_repeat 2 104 0 377 108 0 15 chrX 153060519 153060584 -23913556 + (GGAGA)n Simple_repeat Simple_repeat 1 64 0 1497 260 138 22 chrX 153062183 153063094 -23911046 + L2 LINE L2 2283 3303 -10 374 290 90 21 chrX 153063605 153063750 -23910390 - MIR SINE MIR -102 160 6 288 317 64 43 chrX 153064182 153064448 -23909692 + L2 LINE L2 2722 2995 -277 761 196 0 0 chrX 153064448 153064581 -23909559 + FLAM_C SINE Alu 1 133 0 288 317 64 43 chrX 153064581 153064690 -23909450 + L2 LINE L2 2995 3100 -172 219 295 26 0 chrX 153065346 153065424 -23908716 + MIR SINE MIR 106 185 -77 433 272 207 18 chrX 153066617 153066786 -23907354 - MIR SINE MIR -23 239 39 560 218 172 46 chrX 153066889 153067063 -23907077 - MER63A DNA MER1_type -14 196 1 571 245 245 0 chrX 153067066 153067254 -23906886 + MIR SINE MIR 25 258 -4 305 337 77 45 chrX 153067254 153067500 -23906640 + L2 LINE L2 2531 2784 -530 1855 156 131 18 chrX 153067567 153067957 -23906183 - MLT1C LTR MaLR -5 462 29 409 103 15 29 chrX 153067968 153068036 -23906104 - MLT1C LTR MaLR -323 67 1 2203 199 12 22 chrX 153068036 153068453 -23905687 - MLT1C-int LTR MaLR 0 1371 959 191 309 73 0 chrX 153068926 153068994 -23905146 - L2 LINE L2 -20 3252 3180 820 263 37 21 chrX 153069128 153069371 -23904769 + MIR SINE MIR 5 251 -11 251 340 2 0 chrX 153069625 153069715 -23904425 + MIR SINE MIR 36 128 -80 289 252 46 46 chrX 153072177 153072308 -23901832 + LTR16A1 LTR ERVL 315 445 -12 631 340 40 13 chrX 153072579 153072882 -23901258 + HERV16 LTR ERVL 311 621 -4375 311 389 0 7 chrX 153072891 153073040 -23901100 + HERV16 LTR ERVL 761 908 -4856 267 386 37 19 chrX 153073549 153073764 -23900376 + LTR16C LTR ERVL 256 474 -17 256 314 34 81 chrX 153073782 153074018 -23900122 - L2 LINE L2 -86 3186 2962 403 277 36 0 chrX 153075643 153075780 -23898360 + MER103 DNA DNA 13 154 -12 304 245 0 75 chrX 153075852 153075946 -23898194 - MIR3 SINE MIR -49 159 73 268 250 31 42 chrX 153076003 153076099 -23898041 + L3 LINE CR1 1400 1494 -83 335 331 162 0 chrX 153076116 153076258 -23897882 + MER5A DNA MER1_type 12 176 -13 232 211 35 0 chrX 153076448 153076505 -23897635 - MLT2C2 LTR ERVL -405 59 1 495 294 92 0 chrX 153076505 153076658 -23897482 - MIR SINE MIR -70 192 26 273 253 13 13 chrX 153077264 153077339 -23896801 + MIR3 SINE MIR 109 183 -25 2382 58 7 0 chrX 153077640 153077935 -23896205 + AluY SINE Alu 1 297 -14 335 244 0 17 chrX 153077935 153078043 -23896097 + CT-rich Low_complexity Low_complexity 13 120 0 196 291 103 51 chrX 153078809 153078926 -23895214 - MIR3 SINE MIR -83 125 3 244 212 0 61 chrX 153079332 153079398 -23894742 - MIR SINE MIR -61 147 86 185 343 44 15 chrX 153079733 153079870 -23894270 - MIR SINE MIR -43 219 79 512 218 8 0 chrX 153081208 153081341 -23892799 + GA-rich Low_complexity Low_complexity 1 134 0 194 250 0 0 chrX 153082075 153082127 -23892013 - MIR SINE MIR -97 165 114 201 129 0 0 chrX 153082778 153082809 -23891331 + (GGGTG)n Simple_repeat Simple_repeat 1 31 0 512 232 6 0 chrX 153084577 153084609 -23889531 + (CA)n Simple_repeat Simple_repeat 2 32 -134 1988 157 38 24 chrX 153084609 153084978 -23889162 + MLT1A2 LTR MaLR 1 374 0 512 232 6 0 chrX 153084978 153085109 -23889031 + (CA)n Simple_repeat Simple_repeat 32 166 0 293 312 0 0 chrX 153085611 153085688 -23888452 + (TG)n Simple_repeat Simple_repeat 1 77 0 219 167 42 0 chrX 153086190 153086238 -23887902 + MIR SINE MIR 85 134 -74 253 263 13 99 chrX 153086369 153086521 -23887619 - L2 LINE L2 -14 3299 3161 2449 163 107 7 chrX 153086615 153087074 -23887066 + MLT1D LTR MaLR 1 505 0 317 304 0 48 chrX 153087089 153087214 -23886926 - MIR SINE MIR -18 244 126 209 361 25 33 chrX 153087674 153087796 -23886344 - MIR SINE MIR -72 136 16 210 368 40 8 chrX 153088345 153088470 -23885670 - L3 LINE CR1 -150 1427 1299 184 171 0 49 chrX 153088512 153088553 -23885587 - L2 LINE L2 -93 3179 3141 268 284 165 18 chrX 153088637 153088746 -23885394 - MIR SINE MIR -89 173 49 591 219 16 8 chrX 153088986 153089109 -23885031 + MER5A DNA MER1_type 4 127 -62 984 183 17 6 chrX 153089109 153089284 -23884856 - MER45A DNA AcHobo 0 178 2 286 197 30 0 chrX 153089286 153089352 -23884788 + MER5A DNA MER1_type 121 188 -1 506 268 117 31 chrX 153089360 153089651 -23884489 - L1ME4a LINE L1 -3 6118 5803 467 321 104 28 chrX 153089816 153090065 -23884075 + LTR16C LTR ERVL 224 491 0 314 299 62 21 chrX 153090081 153090275 -23883865 - L1ME4a LINE L1 -331 5790 5589 2995 158 7 4 chrX 153090467 153090929 -23883211 - MLT1C LTR MaLR -2 465 3 2211 108 0 0 chrX 153091047 153091344 -23882796 + AluSg SINE Alu 1 297 -13 356 285 66 7 chrX 153091499 153091636 -23882504 - MIR3 SINE MIR -40 168 24 384 284 18 37 chrX 153091685 153091822 -23882318 - MIR SINE MIR -75 133 1 434 246 108 0 chrX 153091903 153092033 -23882107 + MER103 DNA DNA 21 164 -2 409 221 74 16 chrX 153093109 153093231 -23880909 - MIR SINE MIR -70 192 64 247 224 10 10 chrX 153094793 153094891 -23879249 + (TGG)n Simple_repeat Simple_repeat 2 99 0 2201 78 7 23 chrX 153095387 153095695 -23878445 - AluSc SINE Alu 0 309 7 979 300 57 10 chrX 153095710 153096097 -23878043 - LTR16B LTR ERVL -59 405 1 348 135 0 0 chrX 153096707 153096781 -23877359 + (GA)n Simple_repeat Simple_repeat 1 74 0 208 65 22 65 chrX 153096973 153097019 -23877121 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 450 211 76 41 chrX 153097470 153097641 -23876499 - L1ME4a LINE L1 -5 6116 5940 705 289 47 55 chrX 153097667 153097729 -23876411 - LTR16C LTR ERVL -8 483 422 2228 185 15 5 chrX 153097729 153098139 -23876001 + MLT2D LTR ERVL 1 414 0 705 289 47 55 chrX 153098139 153098456 -23875684 - LTR16C LTR ERVL -69 422 107 295 227 87 8 chrX 153098626 153098753 -23875387 - L1ME4a LINE L1 -271 5850 5689 1804 145 139 26 chrX 153098753 153099097 -23875043 - MLT1B LTR MaLR 0 390 8 236 304 39 20 chrX 153099122 153099224 -23874916 + L2 LINE L2 3136 3239 -33 6196 214 87 29 chrX 153099382 153101348 -23872792 - L1MDa LINE L1 -4285 2255 34 370 257 190 14 chrX 153101362 153101509 -23872631 - MIR SINE MIR -59 149 32 301 214 0 0 chrX 153102094 153102164 -23871976 - MIR SINE MIR -105 157 88 186 103 0 0 chrX 153103015 153103044 -23871096 + (CA)n Simple_repeat Simple_repeat 1 29 0 553 152 50 10 chrX 153103761 153103860 -23870280 - FAM SINE Alu -6 179 77 1208 167 48 0 chrX 153104023 153104233 -23869907 - MLT1D LTR MaLR 0 505 286 1977 169 11 6 chrX 153104246 153104595 -23869545 + MLT1A1 LTR MaLR 15 365 0 912 188 85 27 chrX 153104595 153104815 -23869325 - MLT1D LTR MaLR -271 234 2 213 220 20 0 chrX 153105066 153105116 -23869024 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 550 277 13 30 chrX 153105950 153106150 -23867990 + MIR SINE MIR 7 197 -40 1541 149 216 46 chrX 153106519 153106907 -23867233 - MLT2C2 LTR ERVL 0 464 11 672 196 60 0 chrX 153106920 153107053 -23867087 - L1PB4 LINE L1 -14 6142 6002 357 130 0 0 chrX 153107053 153107107 -23867033 + L1PB4 LINE L1 5926 5979 -177 208 237 0 0 chrX 153107702 153107740 -23866400 + (CA)n Simple_repeat Simple_repeat 1 38 0 1464 237 92 39 chrX 153108068 153108536 -23865604 + MLT1D LTR MaLR 13 505 0 306 305 38 0 chrX 153108631 153108736 -23865404 - MIR SINE MIR -67 141 33 2270 95 0 0 chrX 153108793 153109100 -23865040 - AluSg SINE Alu 0 307 1 1237 246 115 19 chrX 153110617 153111036 -23863104 - MLT1C LTR MaLR -8 459 1 1454 197 46 38 chrX 153112861 153113029 -23861111 + MLT1A2 LTR MaLR 1 166 -208 261 0 0 0 chrX 153113029 153113058 -23861082 + (TC)n Simple_repeat Simple_repeat 2 30 0 1454 197 46 38 chrX 153113058 153113260 -23860880 + MLT1A2 LTR MaLR 166 374 0 2192 145 118 39 chrX 153113298 153113766 -23860374 + MLT1D LTR MaLR 1 505 0 1347 270 42 16 chrX 153114494 153114924 -23859216 + L1ME LINE L1 5 445 -5625 212 300 0 0 chrX 153114973 153115023 -23859117 - L2 LINE L2 -18 3254 3205 246 247 39 0 chrX 153115408 153115485 -23858655 + MIR SINE MIR 70 149 -113 380 270 40 23 chrX 153116082 153116256 -23857884 - MIR3 SINE MIR -15 193 17 269 176 216 0 chrX 153116463 153116537 -23857603 - MER96 DNA MER1_type? -78 97 8 194 371 52 0 chrX 153116738 153116835 -23857305 - MIR SINE MIR -113 149 48 1626 186 18 7 chrX 153117650 153117935 -23856205 - AluJo SINE Alu -14 298 11 383 259 28 19 chrX 153119122 153119230 -23854910 + MER117 DNA MER1_type 89 197 0 1454 287 106 47 chrX 153120056 153120972 -23853168 + HAL1 LINE L1 1 970 -1537 771 196 14 0 chrX 153120986 153121129 -23853011 + MLT1D LTR MaLR 311 455 -50 2385 241 83 29 chrX 153121129 153121167 -23852973 + HAL1 LINE L1 964 998 -1509 2661 145 4 24 chrX 153121167 153121621 -23852519 + L1MC1 LINE L1 5889 6333 0 2385 241 83 29 chrX 153121621 153122384 -23851756 + HAL1 LINE L1 998 1809 -698 1193 231 76 33 chrX 153122392 153122842 -23851298 + HAL1 LINE L1 1930 2398 -109 25 31 0 0 chrX 153122894 153122926 -23851214 + AT_rich Low_complexity Low_complexity 1 32 0 233 330 36 18 chrX 153123108 153123220 -23850920 - MIR SINE MIR -55 153 40 397 161 12 12 chrX 153123315 153123396 -23850744 - MIR SINE MIR -82 180 100 1272 116 61 0 chrX 153123471 153123669 -23850471 - L1MD1 LINE L1 0 6242 6033 770 166 11 8 chrX 153123671 153123819 -23850321 - L1MD1 LINE L1 -366 5876 5720 488 239 14 7 chrX 153123831 153123969 -23850171 + MIR SINE MIR 119 257 -5 465 304 42 30 chrX 153126218 153126386 -23847754 - L2 LINE L2 -1 3271 3102 1789 199 17 8 chrX 153126450 153126812 -23847328 - MLT1A1 LTR MaLR 0 365 1 2420 168 31 74 chrX 153127147 153127848 -23846292 + L1MC5 LINE L1 6542 7199 -762 312 197 0 28 chrX 153127820 153127891 -23846249 - L1MD2 LINE L1 -149 6210 6142 * 260 133 44 0 chrX 153127891 153127936 -23846204 - MLT2B1 LTR ERVL 0 515 469 1318 195 84 14 chrX 153127937 153128234 -23845906 + MER2 DNA MER2_type 4 321 -24 345 47 0 0 chrX 153128240 153128283 -23845857 + (TG)n Simple_repeat Simple_repeat 2 44 0 1866 204 58 3 chrX 153128295 153128658 -23845482 - MLT2B1 LTR ERVL -110 410 28 1958 187 21 44 chrX 153128659 153129087 -23845053 - L1MD2 LINE L1 -351 5891 5474 1176 199 28 29 chrX 153129092 153129399 -23844741 - MER93b LTR ERV1 -26 347 66 1373 192 45 17 chrX 153129433 153129720 -23844420 + MLT2B1 LTR ERVL 4 298 -222 4108 244 29 21 chrX 153129747 153131179 -23842961 - L1MD2 LINE L1 -745 5401 4036 276 207 23 23 chrX 153131388 153131475 -23842665 + L1MC5 LINE L1 7644 7730 -231 669 285 4 37 chrX 153132886 153133132 -23841008 - MIR SINE MIR -12 250 13 4682 214 45 44 chrX 153133163 153135389 -23838751 - L1MD2 LINE L1 -8 6628 4394 347 190 0 0 chrX 153135397 153135455 -23838685 - MLT1B LTR MaLR -3 387 330 830 160 55 46 chrX 153135467 153135658 -23838482 - MLT1B LTR MaLR -196 178 1 2873 235 52 18 chrX 153135661 153136053 -23838087 - L1MD2 LINE L1 -2169 4371 3994 2010 143 0 17 chrX 153136053 153136353 -23837787 - AluSx SINE Alu -17 295 1 2873 235 52 18 chrX 153136353 153137346 -23836794 - L1MD2 LINE L1 -2546 3994 2809 1361 94 0 0 chrX 153137348 153137519 -23836621 - AluSg/x SINE Alu -7 305 135 2689 43 0 16 chrX 153137520 153137843 -23836297 - AluYb8 SINE Alu 0 318 1 755 269 26 4 chrX 153137843 153138070 -23836070 - L1MD2 LINE L1 -3723 2817 2586 1325 155 37 11 chrX 153138077 153138348 -23835792 - L1MD2 LINE L1 -4119 2421 2144 210 128 0 106 chrX 153139340 153139387 -23834753 - L3b LINE CR1 -4 1579 1538 283 259 37 12 chrX 153139398 153139479 -23834661 - MIR SINE MIR -93 115 33 7733 28 1 0 chrX 153139546 153141136 -23833004 + L1PA3 LINE L1 4581 6172 0 5225 209 38 22 chrX 153141136 153143241 -23830899 + L1MDa LINE L1 1425 3560 -2980 1375 114 9 9 chrX 153143241 153143460 -23830680 + L1MA4A LINE L1 6076 6294 -9 213 93 10 113 chrX 153143461 153143558 -23830582 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 285 220 6 170 chrX 153143671 153143853 -23830287 - L1MD2 LINE L1 -6215 325 174 463 241 48 43 chrX 153144058 153144245 -23829895 - MIR SINE MIR 0 262 75 235 354 105 13 chrX 153144465 153144694 -23829446 - L2 LINE L2 -219 3053 2804 207 274 38 38 chrX 153145894 153146000 -23828140 + MIR SINE MIR 5 110 -152 186 71 0 0 chrX 153347361 153347389 -23626751 + (A)n Simple_repeat Simple_repeat 1 28 0 529 259 48 11 chrX 153351570 153351759 -23622381 + Tigger5 DNA MER2_type 2056 2251 -72 495 265 0 27 chrX 153354771 153354956 -23619184 + (CA)n Simple_repeat Simple_repeat 1 180 0 201 195 0 0 chrX 153355203 153355244 -23618896 + (CA)n Simple_repeat Simple_repeat 2 42 0 39 0 0 0 chrX 153356177 153356216 -23617924 + AT_rich Low_complexity Low_complexity 1 39 0 306 0 0 0 chrX 153356695 153356729 -23617411 + (T)n Simple_repeat Simple_repeat 1 34 0 1185 170 14 14 chrX 153359467 153359679 -23614461 + MLT1A1 LTR MaLR 154 365 0 791 196 62 11 chrX 153359679 153359802 -23614338 + L1MC3 LINE L1 6078 6214 -1571 243 0 0 0 chrX 153359802 153359829 -23614311 + (CA)n Simple_repeat Simple_repeat 1 27 0 791 196 62 11 chrX 153359829 153359884 -23614256 + L1MC3 LINE L1 6214 6265 -1520 401 318 15 27 chrX 153359988 153360249 -23613891 + L1MC5 LINE L1 7660 7917 -44 513 332 69 50 chrX 153360259 153360663 -23613477 + L1M4 LINE L1 3349 3760 -2386 226 274 29 10 chrX 153360729 153360831 -23613309 + L1M4 LINE L1 3852 3955 -2191 361 314 115 66 chrX 153360878 153361426 -23612714 + L1M4 LINE L1 4015 4589 -1557 247 268 8 63 chrX 153362565 153362692 -23611448 + C-rich Low_complexity Low_complexity 4 123 0 233 184 0 44 chrX 153363134 153363248 -23610892 + C-rich Low_complexity Low_complexity 4 112 0 197 273 104 13 chrX 153366788 153366865 -23607275 - L2 LINE L2 -2 3270 3187 2752 3 0 6 chrX 153367335 153367646 -23606494 - AluYa5 SINE Alu -2 309 1 183 361 82 25 chrX 153368070 153368228 -23605912 - MIR SINE MIR 0 262 96 215 314 35 58 chrX 153368257 153368343 -23605797 - MIR SINE MIR -109 99 16 477 233 138 56 chrX 153369623 153369972 -23604168 + MLT1I LTR MaLR 39 449 -1 24 0 0 0 chrX 153369993 153370017 -23604123 + AT_rich Low_complexity Low_complexity 1 24 0 232 283 42 24 chrX 153370248 153370295 -23603845 - L1MC/D LINE L1 -1923 5885 5840 428 0 19 0 chrX 153370295 153370347 -23603793 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 232 283 42 24 chrX 153370347 153370465 -23603675 - L1MC/D LINE L1 -1968 5840 5717 321 286 67 50 chrX 153372362 153372645 -23601495 - L1ME LINE L1 -296 5825 5538 2448 136 3 16 chrX 153373005 153373374 -23600766 + THE1B LTR MaLR 1 364 0 310 325 0 0 chrX 153374879 153374993 -23599147 + L1ME1 LINE L1 5999 6112 -54 1419 262 27 16 chrX 153374994 153375543 -23598597 + L1ME LINE L1 2558 3112 -3034 1800 129 21 4 chrX 153376357 153376637 -23597503 - MLT2C2 LTR ERVL -179 285 1 800 227 35 5 chrX 153376753 153376951 -23597189 - MLT1B LTR MaLR 0 390 187 375 78 0 0 chrX 153376953 153377004 -23597136 + (GA)n Simple_repeat Simple_repeat 2 52 0 543 206 84 24 chrX 153377031 153377209 -23596931 - MLT1B LTR MaLR -203 187 3 1698 223 73 19 chrX 153377209 153377916 -23596224 + L1ME LINE L1 4791 5527 -757 231 299 15 0 chrX 153378857 153378924 -23595216 + L2 LINE L2 3187 3254 -18 209 148 0 19 chrX 153382431 153382485 -23591655 + (TGGGGG)n Simple_repeat Simple_repeat 2 54 0 346 278 0 48 chrX 153382930 153383056 -23591084 + G-rich Low_complexity Low_complexity 4 123 0 991 310 116 59 chrX 153384184 153385344 -23588796 - L1M4 LINE L1 -1557 4589 3364 359 278 61 47 chrX 153385364 153385724 -23588416 - L1MC5 LINE L1 -44 7917 7553 3411 212 51 62 chrX 153385731 153385920 -23588220 - L1MC3 LINE L1 -763 5383 5194 1953 176 19 16 chrX 153385920 153386284 -23587856 - MLT1A1 LTR MaLR 0 365 1 3411 212 51 62 chrX 153386284 153387591 -23586549 - L1MC3 LINE L1 -952 5194 4791 873 237 68 45 chrX 153387591 153388027 -23586113 + MLT1B LTR MaLR 3 390 0 1676 141 37 0 chrX 153388145 153388415 -23585725 + MLT2C2 LTR ERVL 6 285 -179 1498 259 29 18 chrX 153389228 153389777 -23584363 - L1MC3 LINE L1 -3034 3112 2558 351 267 22 44 chrX 153389778 153389913 -23584227 - L1ME2 LINE L1 -55 6109 5978 2448 136 3 16 chrX 153391401 153391770 -23582370 - THE1B LTR MaLR 0 364 1 321 286 67 50 chrX 153392130 153392413 -23581727 + L1ME LINE L1 5538 5825 -296 578 287 94 69 chrX 153394133 153394428 -23579712 + L1ME4a LINE L1 5539 5852 -269 428 0 19 0 chrX 153394428 153394480 -23579660 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 578 287 94 69 chrX 153394480 153394675 -23579465 + L1ME4a LINE L1 5852 6041 -80 24 0 0 0 chrX 153394758 153394782 -23579358 + AT_rich Low_complexity Low_complexity 1 24 0 501 232 138 56 chrX 153394803 153395152 -23578988 - MLT1I LTR MaLR -1 449 39 215 314 35 58 chrX 153396432 153396518 -23577622 + MIR SINE MIR 16 99 -109 183 361 82 25 chrX 153396547 153396705 -23577435 + MIR SINE MIR 96 262 0 2770 3 0 6 chrX 153397129 153397442 -23576698 + AluYa5 SINE Alu 1 311 0 197 273 104 13 chrX 153397919 153397996 -23576144 + L2 LINE L2 3187 3270 -2 233 184 0 44 chrX 153401536 153401650 -23572490 + G-rich Low_complexity Low_complexity 4 112 0 247 268 8 63 chrX 153402092 153402219 -23571921 + G-rich Low_complexity Low_complexity 4 123 0 361 314 115 66 chrX 153403358 153403906 -23570234 - L1M4 LINE L1 -1557 4589 4015 226 274 29 10 chrX 153403953 153404055 -23570085 - L1M4 LINE L1 -2191 3955 3852 513 332 69 50 chrX 153404121 153404525 -23569615 - L1M4 LINE L1 -2386 3760 3349 401 318 15 27 chrX 153404535 153404796 -23569344 - L1MC5 LINE L1 -44 7917 7660 3701 212 75 24 chrX 153404900 153404955 -23569185 - L1MC3 LINE L1 -744 5402 5351 243 0 0 0 chrX 153404955 153404982 -23569158 + (TG)n Simple_repeat Simple_repeat 1 27 0 3701 212 75 24 chrX 153404982 153405105 -23569035 - L1MC3 LINE L1 -795 5351 5236 1949 181 19 19 chrX 153405105 153405470 -23568670 - MLT1A1 LTR MaLR 0 365 1 3701 212 75 24 chrX 153405470 153405744 -23568396 - L1MC3 LINE L1 -910 5236 5696 369 0 0 0 chrX 153405744 153405785 -23568355 + (TA)n Simple_repeat Simple_repeat 2 42 0 3701 212 75 24 chrX 153405785 153406760 -23567380 - L1MC3 LINE L1 -449 5697 4773 1271 179 45 98 chrX 153406760 153406947 -23567193 + MLT1B LTR MaLR 15 171 -219 642 26 0 0 chrX 153406947 153407023 -23567117 + (TC)n Simple_repeat Simple_repeat 2 77 0 1271 179 45 98 chrX 153407023 153407232 -23566908 + MLT1B LTR MaLR 171 390 0 337 248 62 26 chrX 153407232 153407345 -23566795 - L1M4 LINE L1 -1067 5079 4963 1798 129 21 4 chrX 153407347 153407627 -23566513 + MLT2C2 LTR ERVL 1 285 -179 1415 267 26 15 chrX 153408449 153408988 -23565152 - L1M4 LINE L1 -3044 3102 2558 382 298 0 0 chrX 153408989 153409103 -23565037 - L1ME1 LINE L1 -54 6112 5999 294 289 70 47 chrX 153410735 153410991 -23563149 + L1ME LINE L1 5539 5800 -321 225 0 0 0 chrX 153411020 153411045 -23563095 + (TCTA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chrX 153411334 153411357 -23562783 + AT_rich Low_complexity Low_complexity 1 23 0 419 232 143 95 chrX 153411381 153411733 -23562407 - MLT1J2 LTR MaLR -2 448 39 249 279 59 140 chrX 153413017 153413289 -23560851 + MIR SINE MIR 13 262 0 196 313 15 0 chrX 153414180 153414247 -23559893 + L2 LINE L2 3187 3254 -18 297 165 0 33 chrX 153417412 153417503 -23556637 + G-rich Low_complexity Low_complexity 4 91 0 285 264 8 62 chrX 153417956 153418085 -23556055 + G-rich Low_complexity Low_complexity 4 125 0 1109 314 106 57 chrX 153419022 153420203 -23553937 - L1MC3 LINE L1 -1557 4589 3351 454 289 50 36 chrX 153420219 153420499 -23553641 - L1MC5 LINE L1 -48 7913 7630 3668 216 56 38 chrX 153420581 153420772 -23553368 - L1MC3 LINE L1 -751 5395 5209 1980 179 19 16 chrX 153420772 153421136 -23553004 - MLT1A1 LTR MaLR 0 365 1 3668 216 56 38 chrX 153421136 153422417 -23551723 - L1MC3 LINE L1 -937 5209 4773 1315 190 38 84 chrX 153422417 153422604 -23551536 + MLT1B LTR MaLR 15 176 -214 198 0 0 0 chrX 153422604 153422626 -23551514 + (TC)n Simple_repeat Simple_repeat 2 23 0 1315 190 38 84 chrX 153422626 153422832 -23551308 + MLT1B LTR MaLR 176 390 0 256 150 33 17 chrX 153422889 153422949 -23551191 - L1M4 LINE L1 -1123 5023 4963 1853 141 17 0 chrX 153422951 153423280 -23550860 + MLT2C2 LTR ERVL 1 333 -64 246 136 0 0 chrX 153423318 153423362 -23550778 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 472 225 79 75 chrX 153423374 153423614 -23550526 - L1M4 LINE L1 -1182 4964 4724 2224 108 24 38 chrX 153423626 153423995 -23550145 - THE1B LTR MaLR 0 364 1 807 88 0 0 chrX 153423995 153424109 -23550031 - THE1B-int LTR MaLR 0 1580 1467 1479 130 8 8 chrX 153424109 153424348 -23549792 + HSMAR2 DNA Mariner 1061 1299 -3 523 276 150 60 chrX 153424721 153425134 -23549006 - MLT1J2 LTR MaLR 0 450 1 1629 187 24 66 chrX 153425786 153426165 -23547975 + MLT1A2 LTR MaLR 1 363 -11 1618 189 12 84 chrX 153426770 153427014 -23547126 - MLT1A2 LTR MaLR 0 374 169 2566 143 26 5 chrX 153427014 153427433 -23546707 + MSTA LTR MaLR 1 428 0 1618 189 12 84 chrX 153427433 153427591 -23546549 - MLT1A2 LTR MaLR -205 169 1 1766 128 8 4 chrX 153427744 153428010 -23546130 - MLT1B LTR MaLR 0 390 124 458 333 62 5 chrX 153428023 153428215 -23545925 + MIR SINE MIR 57 259 -3 325 209 110 0 chrX 153429105 153429196 -23544944 + L2 LINE L2 3170 3270 -2 3942 71 40 36 chrX 153429350 153429446 -23544694 - MER41B LTR ERV1 -81 554 460 2175 97 3 0 chrX 153429446 153429754 -23544386 - AluY SINE Alu -2 309 1 3942 71 40 36 chrX 153429754 153430209 -23543931 - MER41B LTR ERV1 -175 460 1 5242 106 21 7 chrX 153430209 153430956 -23543184 - MER41B-int LTR ERV1 -2 5944 5187 813 141 0 15 chrX 153430963 153431098 -23543042 - FLAM_C SINE Alu 0 133 1 1022 72 0 14 chrX 153431130 153431268 -23542872 + AluSq SINE Alu 1 136 -177 216 0 0 0 chrX 153431281 153431305 -23542835 + (CA)n Simple_repeat Simple_repeat 2 25 0 289 256 0 0 chrX 153431305 153431387 -23542753 - L1MC4 LINE L1 -1347 6695 6614 1141 97 0 0 chrX 153431395 153431626 -23542514 + AluSq SINE Alu 130 360 0 4341 73 0 0 chrX 153431626 153432170 -23541970 - MER41B-int LTR ERV1 -764 5182 4639 572 138 11 0 chrX 153432165 153432252 -23541888 - MER41B-int LTR ERV1 -5858 88 1 * 991 126 26 0 chrX 153432252 153432403 -23541737 - MER41B LTR ERV1 0 635 481 365 188 12 0 chrX 153436971 153437051 -23537089 + G-rich Low_complexity Low_complexity 3 83 0 216 97 0 0 chrX 153437533 153437564 -23536576 + (TGGGGG)n Simple_repeat Simple_repeat 6 36 0 356 261 20 20 chrX 153438227 153438380 -23535760 + (TA)n Simple_repeat Simple_repeat 2 154 0 261 293 111 60 chrX 153438922 153439635 -23534505 - L1M4 LINE L1 -1565 4581 3833 4162 148 49 0 chrX 153439654 153440281 -23533859 + L1M1 LINE L1 16 673 -6892 1144 83 0 0 chrX 153440282 153440438 -23533702 + AluY SINE Alu 155 310 -1 390 258 7 5 chrX 153440501 153440602 -23533538 - L1MC3 LINE L1 -1375 6410 6333 * 2431 198 82 24 chrX 153440595 153440860 -23533280 - L1MC3 LINE L1 -743 5403 5155 185 65 32 0 chrX 153440860 153440891 -23533249 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2431 198 82 24 chrX 153440891 153441703 -23532437 - L1MC3 LINE L1 -991 5155 4743 2305 213 12 21 chrX 153441710 153442223 -23531917 + L1MC3 LINE L1 7249 7756 -29 881 261 112 66 chrX 153442261 153442870 -23531270 + L1MC/D LINE L1 3998 4669 -1477 3218 85 14 0 chrX 153442870 153443292 -23530848 + MSTA LTR MaLR 1 428 0 881 261 112 66 chrX 153443292 153443651 -23530489 + L1MC/D LINE L1 4669 5010 -1136 538 264 21 0 chrX 153444514 153444658 -23529482 - L1M4 LINE L1 -951 5195 5049 1294 266 56 17 chrX 153445222 153445632 -23528508 - L1MCb LINE L1 -5604 441 16 10396 194 53 26 chrX 153445633 153447737 -23526403 - L1MDa LINE L1 -4170 2370 199 2289 84 0 0 chrX 153447737 153448021 -23526119 + AluSg SINE Alu 27 310 0 10396 194 53 26 chrX 153448021 153448207 -23525933 - L1MDa LINE L1 -6341 199 19 335 226 87 9 chrX 153448214 153448329 -23525811 + MER97c DNA MER1_type? 71 194 -896 2382 137 52 36 chrX 153448367 153448544 -23525596 - MER65A LTR ERV1 0 445 272 1890 167 3 3 chrX 153448544 153448849 -23525291 + AluSx SINE Alu 1 305 -7 2382 137 52 36 chrX 153448849 153449109 -23525031 - MER65A LTR ERV1 -173 272 1 548 237 22 0 chrX 153449847 153449982 -23524158 + L1MC/D LINE L1 5540 5677 -682 1630 175 16 0 chrX 153450042 153450351 -23523789 - L1MC/D LINE L1 -690 5669 5356 868 191 31 70 chrX 153450346 153450603 -23523537 - L1MC/D LINE L1 -1989 4157 3911 * 2957 232 124 23 chrX 153450625 153450664 -23523476 - L1MC/D LINE L1 -2759 3387 3353 1977 120 20 10 chrX 153450664 153450964 -23523176 - AluSx SINE Alu -9 303 1 2957 232 124 23 chrX 153450964 153451276 -23522864 - L1MC/D LINE L1 -2793 3353 3074 2897 84 15 0 chrX 153451276 153451680 -23522460 - L1PA13 LINE L1 0 6163 5754 2957 232 124 23 chrX 153451680 153452442 -23521698 - L1MC/D LINE L1 -3072 3074 2161 693 349 4 25 chrX 153452442 153452720 -23521420 + LTR16A LTR ERVL 139 410 -40 1935 220 66 23 chrX 153452738 153453296 -23520844 + L1ME2 LINE L1 5582 6163 -1 244 193 46 64 chrX 153453555 153453708 -23520432 + L1 LINE L1 5221 5370 -776 769 204 0 7 chrX 153453719 153453861 -23520279 - FLAM_C SINE Alu -1 142 2 371 197 0 0 chrX 153453878 153453954 -23520186 - L1MB8 LINE L1 -1 6177 6102 246 62 0 0 chrX 153454008 153454040 -23520100 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chrX 153454040 153454073 -23520067 + (CA)n Simple_repeat Simple_repeat 1 33 0 406 248 51 8 chrX 153454074 153454191 -23519949 + L2 LINE L2 3191 3312 -1 246 328 106 5 chrX 153454184 153454382 -23519758 - L2 LINE L2 -729 2585 2368 * 200 352 109 8 chrX 153454414 153454542 -23519598 + MIR3 SINE MIR 16 156 -52 2328 89 0 0 chrX 153455076 153455358 -23518782 + AluSp SINE Alu 1 282 -31 387 0 0 0 chrX 153455361 153455404 -23518736 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 257 374 0 0 chrX 153455409 153455532 -23518608 + L2 LINE L2 2736 2858 -456 5017 166 36 18 chrX 153456099 153457110 -23517030 - L1MB3 LINE L1 -3 6180 5140 1850 153 6 31 chrX 153457110 153457430 -23516710 + AluJo SINE Alu 1 312 0 5017 166 36 18 chrX 153457430 153457684 -23516456 - L1MB3 LINE L1 -1043 5140 4892 1676 215 29 25 chrX 153457843 153458290 -23515850 + Charlie4a DNA MER1_type 28 476 -32 992 208 0 11 chrX 153459159 153459337 -23514803 + MER45A DNA AcHobo 2 177 -1 2238 171 8 0 chrX 153459691 153460078 -23514062 + MLT1B LTR MaLR 1 390 0 274 336 57 8 chrX 153460123 153460245 -23513895 - MIR SINE MIR -122 140 13 323 263 21 21 chrX 153460837 153460932 -23513208 - L1ME2 LINE L1 -9 6155 6061 981 150 0 46 chrX 153460977 153461150 -23512990 + FRAM SINE Alu 1 162 -14 396 297 139 28 chrX 153462107 153462531 -23511609 + L2 LINE L2 1646 2116 -1198 1253 281 32 34 chrX 153462650 153463087 -23511053 + MLT1J2 LTR MaLR 15 450 0 430 303 8 8 chrX 153463236 153463355 -23510785 - L2 LINE L2 0 3272 3154 3555 174 28 8 chrX 153463559 153464272 -23509868 - L1MB4 LINE L1 0 6180 5454 465 234 104 30 chrX 153464534 153464735 -23509405 + L1M4 LINE L1 4878 5093 -1053 1145 136 15 15 chrX 153464745 153464943 -23509197 - L1PB1 LINE L1 -3 6148 5951 286 144 40 0 chrX 153465437 153465499 -23508641 - MLT2B1 LTR ERVL 0 554 452 261 200 15 0 chrX 153465506 153465571 -23508569 + (TA)n Simple_repeat Simple_repeat 2 67 0 1988 191 28 85 chrX 153465571 153466079 -23508061 - MLT2B1 LTR ERVL -41 479 1 619 217 364 3 chrX 153466339 153466680 -23507460 + L2 LINE L2 2850 3313 0 540 0 0 0 chrX 153467254 153467314 -23506826 + (CA)n Simple_repeat Simple_repeat 1 60 0 413 265 11 99 chrX 153467669 153467850 -23506290 - MIR SINE MIR -67 195 31 985 176 4 127 chrX 153468366 153468633 -23505507 - MLT1B LTR MaLR 0 390 157 230 224 15 45 chrX 153468634 153468768 -23505372 + (TA)n Simple_repeat Simple_repeat 2 131 0 712 236 6 12 chrX 153468772 153468937 -23505203 - MLT1B LTR MaLR -226 164 1 255 347 8 8 chrX 153469877 153469998 -23504142 - MIR SINE MIR -122 140 20 201 288 14 27 chrX 153470046 153470119 -23504021 - L2 LINE L2 -656 2658 2587 561 88 55 0 chrX 153473569 153473660 -23500480 + L1MA8 LINE L1 6192 6287 -4 2335 94 17 28 chrX 153473701 153474053 -23500087 - L1PA10 LINE L1 0 6168 5821 220 267 107 15 chrX 153474405 153474536 -23499604 - MIR SINE MIR -100 162 20 180 265 0 0 chrX 153474568 153474617 -23499523 - MER5A DNA MER1_type -23 166 118 511 217 139 0 chrX 153474697 153474863 -23499277 - MER53 DNA DNA 0 189 1 795 151 16 0 chrX 153476143 153476269 -23497871 - FLAM_C SINE Alu -4 129 2 580 261 60 30 chrX 153480140 153480572 -23493568 + L2 LINE L2 2756 3283 -30 372 233 47 39 chrX 153480870 153480999 -23493141 + MIR SINE MIR 80 209 -53 2514 146 21 19 chrX 153481032 153481465 -23492675 + Tigger2a DNA MER2_type 1 434 0 242 328 61 0 chrX 153482328 153482459 -23491681 - L2 LINE L2 -210 3062 2924 39999 75 8 7 chrX 153483445 153489586 -23484554 - L1PA6 LINE L1 0 6154 11 786 196 12 6 chrX 153489931 153490104 -23484036 - L1MB3 LINE L1 -10 6173 6000 3094 152 5 48 chrX 153490108 153490636 -23483504 - L1MB3 LINE L1 -275 5908 5407 2355 99 0 10 chrX 153490636 153490949 -23483191 - AluSx SINE Alu -2 310 1 3094 152 5 48 chrX 153490949 153491019 -23483121 - L1MB3 LINE L1 -776 5407 5336 1095 190 75 22 chrX 153491471 153491783 -23482357 - MLT1C LTR MaLR -5 462 135 448 261 121 13 chrX 153492302 153492459 -23481681 - MIR SINE MIR -56 206 33 216 345 0 0 chrX 153492934 153492992 -23481148 - L2 LINE L2 -25 3288 3231 243 317 40 20 chrX 153493942 153494043 -23480097 - MIR SINE MIR -113 149 47 352 120 0 0 chrX 153494237 153494287 -23479853 + AluSq SINE Alu 134 183 -120 512 220 107 13 chrX 153494709 153494859 -23479281 - MLT1H LTR MaLR 0 549 386 2180 99 0 11 chrX 153495165 153495481 -23478659 + AluSx SINE Alu 1 313 0 2418 95 0 3 chrX 153496006 153496311 -23477829 - AluSx SINE Alu -8 304 1 198 0 0 0 chrX 153498000 153498022 -23476118 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 455 250 8 31 chrX 153498745 153498873 -23475267 - MER58A DNA MER1_type 0 156 32 441 361 12 20 chrX 153498896 153498921 -23475219 - L1ME LINE L1 -541 5625 5601 1667 181 49 3 chrX 153498921 153499247 -23474893 - L1MB7 LINE L1 -16 6168 5828 441 361 12 20 chrX 153499247 153499562 -23474578 - L1ME LINE L1 -565 5601 5288 1349 274 183 27 chrX 153499683 153500310 -23473830 + L2 LINE L2 374 1098 -2216 1450 207 48 18 chrX 153500406 153500740 -23473400 - MLT2C1 LTR ERVL -53 344 1 2035 249 225 31 chrX 153500956 153501276 -23472864 + L2 LINE L2 1887 2144 -1169 291 93 0 0 chrX 153501276 153501319 -23472821 + (TG)n Simple_repeat Simple_repeat 1 43 0 2035 249 225 31 chrX 153501319 153502079 -23472061 + L2 LINE L2 2144 3187 -126 340 208 28 28 chrX 153502133 153502205 -23471935 + L2 LINE L2 3179 3250 -63 587 264 170 9 chrX 153502311 153502523 -23471617 - L2 LINE L2 -2093 1221 976 2008 116 29 0 chrX 153502540 153502857 -23471283 - AluSx SINE Alu 0 325 1 661 207 0 18 chrX 153502885 153502996 -23471144 + FLAM_A SINE Alu 2 110 -32 215 31 31 0 chrX 153503037 153503069 -23471071 + (GA)n Simple_repeat Simple_repeat 2 34 0 2342 85 0 29 chrX 153503144 153503451 -23470689 - AluSx SINE Alu -14 298 1 429 287 72 16 chrX 153503490 153503860 -23470280 - L1MEd LINE L1 -988 1502 1022 1197 180 151 52 chrX 153503874 153504319 -23469821 - L1MC5 LINE L1 -131 7830 7342 758 181 23 18 chrX 153504329 153504566 -23469574 + MER33 DNA MER1_type 3 317 -7 3337 220 99 39 chrX 153504620 153504923 -23469217 + L1MC4 LINE L1 6740 7023 -1019 2005 113 48 3 chrX 153504923 153505214 -23468926 + AluSx SINE Alu 1 304 -8 3337 220 99 39 chrX 153505214 153506053 -23468087 + L1MC4 LINE L1 7023 7951 -91 715 227 14 37 chrX 153506231 153506447 -23467693 - L1MC4 LINE L1 -1036 7006 6796 3636 165 3 3 chrX 153507349 153507961 -23466179 - L1MB3 LINE L1 -3 6180 5569 1777 180 10 3 chrX 153508583 153508888 -23465252 + AluJo SINE Alu 3 309 -3 1106 304 111 23 chrX 153509229 153510159 -23463981 - L1MB3 LINE L1 -1033 5113 4102 2289 100 0 10 chrX 153511027 153511327 -23462813 + AluSq SINE Alu 1 297 -16 407 245 170 64 chrX 153511342 153511530 -23462610 - MIR SINE MIR -24 238 31 2521 70 3 0 chrX 153512056 153512356 -23461784 - AluSg SINE Alu -9 301 1 250 280 50 20 chrX 153513115 153513215 -23460925 - MIR SINE MIR -37 225 123 320 263 118 84 chrX 153513222 153513519 -23460621 - L3 LINE CR1 -191 1386 1080 244 317 172 11 chrX 153513571 153513751 -23460389 - L3 LINE CR1 -625 952 744 1679 208 70 0 chrX 153514216 153514557 -23459583 - MLT1A1 LTR MaLR 0 365 1 1596 236 62 5 chrX 153514578 153515015 -23459125 - MLT1C LTR MaLR 0 467 6 209 344 21 0 chrX 153515240 153515333 -23458807 + CT-rich Low_complexity Low_complexity 4 98 0 2266 80 27 3 chrX 153516281 153516580 -23457560 - AluSx SINE Alu -6 306 1 676 184 72 33 chrX 153517920 153518072 -23456068 - FAM SINE Alu -27 158 1 408 198 23 0 chrX 153518584 153518670 -23455470 + MER104 DNA Tc2 68 155 -25 426 225 99 28 chrX 153519486 153519628 -23454512 + MER5A DNA MER1_type 12 163 -26 546 109 0 0 chrX 153520649 153520750 -23453390 + (TG)n Simple_repeat Simple_repeat 1 101 0 828 122 0 0 chrX 153520762 153520926 -23453214 + (TG)n Simple_repeat Simple_repeat 2 165 0 204 267 0 0 chrX 153521258 153521303 -23452837 - L3 LINE CR1 -177 1400 1356 250 239 71 44 chrX 153521755 153521868 -23452272 - MIR3 SINE MIR -86 122 7 1001 222 5 19 chrX 153522485 153522701 -23451439 + MER58A DNA MER1_type 1 213 -11 486 182 36 0 chrX 153522778 153522891 -23451249 + L1M3 LINE L1 5370 5491 -680 2114 107 0 4 chrX 153522891 153523161 -23450979 + AluSx SINE Alu 1 269 -43 210 381 48 9 chrX 153523824 153523929 -23450211 - L2 LINE L2 -23 3249 3141 2139 198 21 31 chrX 153524534 153525014 -23449126 - MLT1D LTR MaLR 0 505 31 1679 211 99 7 chrX 153526560 153526986 -23447154 + MLT1C LTR MaLR 3 467 0 210 91 0 0 chrX 153527416 153527449 -23446691 + (TG)n Simple_repeat Simple_repeat 2 34 0 1346 237 85 27 chrX 153528207 153528403 -23445737 - L1ME3A LINE L1 0 6170 5987 2299 119 0 3 chrX 153528403 153528714 -23445426 + AluSx SINE Alu 1 310 -2 1346 237 85 27 chrX 153528714 153529122 -23445018 - L1ME3A LINE L1 -183 5987 5469 1828 146 3 29 chrX 153529147 153529455 -23444685 - AluJo SINE Alu -12 300 1 1069 290 20 12 chrX 153529472 153529872 -23444268 - L1ME3A LINE L1 -872 5274 4872 1225 226 11 49 chrX 153529959 153530327 -23443813 + MLT2C1 LTR ERVL 44 397 0 275 279 27 45 chrX 153530948 153531059 -23443081 + MIR SINE MIR 31 139 -123 244 250 0 33 chrX 153531647 153531707 -23442433 + MIR SINE MIR 205 262 0 845 238 141 0 chrX 153531801 153532007 -23442133 + MIR SINE MIR 17 251 -11 220 404 53 0 chrX 153534342 153534456 -23439684 - L2 LINE L2 -16 3256 3137 239 306 31 20 chrX 153535813 153535911 -23438229 - L1M2 LINE L1 -591 5721 5623 * 322 277 9 9 chrX 153535909 153536021 -23438119 + L1ME LINE L1 5415 5526 -636 279 198 0 13 chrX 153536037 153536104 -23438036 + L1ME LINE L1 5584 5647 -515 2032 137 3 3 chrX 153536109 153536431 -23437709 + MER47A DNA MER2_type 2 323 -43 1614 242 83 26 chrX 153536468 153536963 -23437177 - L2 LINE L2 -1340 1974 1452 307 279 87 71 chrX 153536991 153537174 -23436966 - L1ME LINE L1 -430 5691 5506 394 289 164 25 chrX 153537254 153537686 -23436454 - L1ME LINE L1 -752 5394 4903 329 273 207 15 chrX 153537886 153538084 -23436056 - L2 LINE L2 -162 3110 2875 180 340 32 21 chrX 153538142 153538236 -23435904 - L2 LINE L2 -825 2489 2395 1485 274 155 50 chrX 153538240 153539271 -23434869 - L2 LINE L2 -616 2698 1560 448 374 123 16 chrX 153539272 153539702 -23434438 - L2 LINE L2 -2092 1222 747 1050 148 0 0 chrX 153540052 153540086 -23434054 + MER3 DNA MER1_type 14 47 -162 286 270 52 58 chrX 153540086 153540260 -23433880 - MER3 DNA MER1_type 0 209 37 1493 185 67 24 chrX 153540878 153541175 -23432965 + AluJb SINE Alu 1 310 -2 419 303 7 14 chrX 153542726 153542868 -23431272 + MIR3 SINE MIR 43 183 -25 942 124 0 0 chrX 153542957 153543086 -23431054 - FLAM_C SINE Alu -10 133 5 225 372 79 12 chrX 153543654 153543818 -23430322 - L2 LINE L2 -203 3069 2895 189 0 0 0 chrX 153543945 153543966 -23430174 + (CAGGG)n Simple_repeat Simple_repeat 3 23 0 688 322 127 27 chrX 153544673 153545294 -23428846 - L2 LINE L2 -46 3226 2538 21 0 0 0 chrX 153546243 153546264 -23427876 + GC_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chrX 153546270 153546296 -23427844 + (CCCGG)n Simple_repeat Simple_repeat 5 30 0 258 83 0 104 chrX 153546737 153546785 -23427355 - MIR3 SINE MIR -54 154 112 221 324 34 87 chrX 153547704 153547911 -23426229 - L2 LINE L2 -44 3228 3033 468 311 28 34 chrX 153548911 153549088 -23425052 + MIR SINE MIR 6 181 -81 1114 158 0 0 chrX 153549376 153549547 -23424593 - FAM SINE Alu 0 175 5 380 229 48 0 chrX 153549583 153549688 -23424452 - L1MC4 LINE L1 0 8042 7933 225 231 138 0 chrX 153549734 153549799 -23424341 - MIR SINE MIR -99 163 90 234 0 0 0 chrX 153550625 153550651 -23423489 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 248 301 14 3 chrX 153550827 153550915 -23423225 + MIR SINE MIR 68 147 -61 2397 83 3 3 chrX 153551241 153551553 -23422587 + AluSx SINE Alu 1 312 0 221 284 25 49 chrX 153553118 153553199 -23420941 - MIR3 SINE MIR -115 93 15 2283 115 0 0 chrX 153558037 153558342 -23415798 - AluSx SINE Alu -7 305 1 404 331 58 49 chrX 153558488 153558899 -23415241 - L1ME4a LINE L1 -123 5998 5584 201 321 48 89 chrX 153559207 153559478 -23414662 - L2 LINE L2 -161 3111 2852 1226 35 40 15 chrX 153559760 153560171 -23413969 + (CATCC)n Simple_repeat Simple_repeat 1 421 0 247 268 80 27 chrX 153560806 153560918 -23413222 - MIR3 SINE MIR -22 186 69 537 250 21 65 chrX 153561959 153562165 -23411975 - MIR SINE MIR -63 199 3 193 232 160 32 chrX 153563524 153563649 -23410491 + MIR3 SINE MIR 30 170 -38 356 331 30 30 chrX 153564128 153564261 -23409879 - L2 LINE L2 -23 3290 3158 198 0 0 0 chrX 153567160 153567182 -23406958 + (GGA)n Simple_repeat Simple_repeat 2 23 0 613 315 36 19 chrX 153568036 153568280 -23405860 + MIR SINE MIR 11 256 -6 261 321 52 22 chrX 153568552 153568686 -23405454 + MIR3 SINE MIR 69 206 -2 205 266 13 76 chrX 153569226 153569305 -23404835 - L2 LINE L2 -210 3062 2989 202 239 138 15 chrX 153569537 153569667 -23404473 - L2 LINE L2 -311 2961 2816 2124 182 40 5 chrX 153569687 153570133 -23404007 - MLT1C LTR MaLR 0 467 6 232 350 17 50 chrX 153570437 153570557 -23403583 + MIR3 SINE MIR 68 183 -25 2022 151 56 0 chrX 153571690 153572009 -23402131 - MER1B DNA MER1_type 0 337 1 1854 155 8 46 chrX 153572042 153572255 -23401885 - MLT1B LTR MaLR -11 379 186 1943 134 0 20 chrX 153572255 153572553 -23401587 - AluJb SINE Alu -18 294 3 1854 155 8 46 chrX 153572553 153572733 -23401407 - MLT1B LTR MaLR -204 186 1 2167 74 3 14 chrX 153572801 153573116 -23401024 - AluSg SINE Alu 0 312 1 1884 161 0 40 chrX 153573145 153573468 -23400672 + AluJo SINE Alu 1 310 -2 703 279 61 44 chrX 153574248 153574473 -23399667 + MIR SINE MIR 1 226 -36 1194 227 53 10 chrX 153574879 153575179 -23398961 - MLT1C LTR MaLR 0 467 155 272 254 116 58 chrX 153576956 153577094 -23397046 - L2 LINE L2 0 3272 3127 209 389 31 36 chrX 153577485 153577678 -23396462 - L2 LINE L2 -77 3195 3004 222 318 230 12 chrX 153577697 153577949 -23396191 + L2 LINE L2 2458 2764 -550 484 240 0 0 chrX 153578176 153578280 -23395860 - MIR SINE MIR -97 165 62 274 271 128 44 chrX 153578832 153579035 -23395105 - L2 LINE L2 -1216 2098 1879 553 298 88 22 chrX 153579054 153579273 -23394867 + MIR SINE MIR 31 259 -3 240 111 0 0 chrX 153579273 153579309 -23394831 + Alu SINE Alu 2 37 -263 1464 175 72 17 chrX 153579400 153579692 -23394448 - AluJb SINE Alu -4 308 1 230 250 181 0 chrX 153580029 153580101 -23394039 + L2 LINE L2 3187 3271 -1 197 346 79 16 chrX 153581302 153581429 -23392711 + L2 LINE L2 3137 3271 -1 566 337 12 0 chrX 153582235 153582404 -23391736 + L2 LINE L2 2689 2859 -455 2079 116 11 69 chrX 153582654 153582948 -23391192 + MER2 DNA MER2_type 2 312 -32 216 0 0 0 chrX 153582948 153582972 -23391168 + (TCTCC)n Simple_repeat Simple_repeat 5 28 0 1876 154 0 0 chrX 153582972 153583258 -23390882 - AluJb SINE Alu -26 286 1 2079 116 11 69 chrX 153583258 153583324 -23390816 + MER2 DNA MER2_type 310 342 -2 2434 64 0 3 chrX 153583359 153583670 -23390470 - AluY SINE Alu -1 310 1 726 275 0 30 chrX 153584161 153584361 -23389779 - MIR SINE MIR -21 241 48 3661 111 31 70 chrX 153585289 153585927 -23388213 - LTR18B LTR ERVL -1 613 1 186 261 144 36 chrX 153586377 153586488 -23387652 - MIR SINE MIR -134 128 6 219 349 108 15 chrX 153586524 153586719 -23387421 - L2 LINE L2 -2 3270 3058 287 291 282 19 chrX 153586943 153587287 -23386853 - L2 LINE L2 -180 3133 2696 308 206 123 0 chrX 153587516 153587589 -23386551 - MIR SINE MIR -128 134 53 2318 124 0 0 chrX 153587911 153588217 -23385923 - AluSx SINE Alu 0 312 1 455 267 27 75 chrX 153588237 153588294 -23385846 - MER5B DNA MER1_type 0 178 120 4973 124 55 47 chrX 153588294 153588554 -23385586 - MER4D LTR ERV1 0 903 647 225 0 0 0 chrX 153588554 153588579 -23385561 + (TGGGGG)n Simple_repeat Simple_repeat 5 29 0 4973 124 55 47 chrX 153588579 153589214 -23384926 - MER4D LTR ERV1 -256 647 1 455 267 27 75 chrX 153589214 153589343 -23384797 - MER5B DNA MER1_type -58 120 1 678 217 96 0 chrX 153589402 153589559 -23384581 + MER20 DNA MER1_type 48 219 0 943 243 33 0 chrX 153590423 153590633 -23383507 + MIR SINE MIR 2 218 -44 715 176 8 32 chrX 153590955 153591080 -23383060 + FLAM_C SINE Alu 1 122 -21 264 106 0 45 chrX 153591083 153591149 -23382991 + (TA)n Simple_repeat Simple_repeat 2 64 0 1640 180 32 7 chrX 153591150 153591428 -23382712 - AluSx SINE Alu -25 287 3 1826 135 47 30 chrX 153592851 153593147 -23380993 + AluJb SINE Alu 1 301 -11 249 307 0 30 chrX 153593966 153594067 -23380073 + GA-rich Low_complexity Low_complexity 2 99 0 538 330 156 26 chrX 153595000 153595233 -23378907 - L2 LINE L2 -527 2787 2586 1941 169 0 6 chrX 153595233 153595546 -23378594 + AluJo SINE Alu 1 311 -1 538 330 156 26 chrX 153595546 153595857 -23378283 - L2 LINE L2 -728 2586 2172 1938 169 9 6 chrX 153596547 153596895 -23377245 + MER68 LTR ERV1 214 562 0 506 305 90 31 chrX 153596908 153597265 -23376875 - L2 LINE L2 -508 2806 2429 327 329 45 47 chrX 153597988 153598410 -23375730 - MER61-int LTR ERV1 -2091 2556 2136 2033 232 108 78 chrX 153598628 153599220 -23374920 - MER61-int LTR ERV1 -1905 3031 2458 903 154 18 47 chrX 153599220 153599389 -23374751 - FRAM SINE Alu -2 164 1 2033 232 108 78 chrX 153599389 153600665 -23373475 - MER61-int LTR ERV1 -2478 2458 1108 993 195 14 57 chrX 153600674 153600956 -23373184 - MER61-int LTR ERV1 -4233 703 434 210 37 0 0 chrX 153601044 153601071 -23373069 + (GGA)n Simple_repeat Simple_repeat 1 27 0 1689 169 33 120 chrX 153601521 153601549 -23372591 - MER92A LTR ERV1 0 412 383 2025 137 7 10 chrX 153601549 153601848 -23372292 + AluJo SINE Alu 1 298 -14 1689 169 33 120 chrX 153601848 153601867 -23372273 - MER92A LTR ERV1 -29 383 364 2107 126 7 0 chrX 153601867 153602175 -23371965 - AluSx SINE Alu 0 310 1 1689 169 33 120 chrX 153602175 153602575 -23371565 - MER92A LTR ERV1 -48 364 1 2814 106 23 25 chrX 153602949 153603384 -23370756 - MER57B LTR ERV1 0 434 1 1405 117 122 0 chrX 153603384 153603614 -23370526 - MER57B-int LTR ERV1 0 7537 7280 629 124 31 31 chrX 153603615 153603744 -23370396 - LTR54B LTR ERV1 -367 131 3 2390 88 0 0 chrX 153603756 153604052 -23370088 + AluSc SINE Alu 1 296 -13 2672 133 12 19 chrX 153604053 153604483 -23369657 - MER57B-int LTR ERV1 -393 7144 6718 1636 156 37 44 chrX 153604496 153604591 -23369549 - MER61-int LTR ERV1 -1586 3429 3335 2212 114 0 0 chrX 153604591 153604888 -23369252 + AluSq SINE Alu 1 297 -16 1636 156 37 44 chrX 153604888 153605202 -23368938 - MER61-int LTR ERV1 -1680 3335 3023 1514 114 18 26 chrX 153605208 153605435 -23368705 - AluSg/x SINE Alu -14 296 72 326 208 104 0 chrX 153605444 153605521 -23368619 - MER61-int LTR ERV1 -4384 833 749 226 254 0 30 chrX 153605521 153605588 -23368552 - tRNA-Glu-GAG tRNA tRNA -3 72 8 3686 123 42 22 chrX 153605588 153606179 -23367961 - MER57-int LTR ERV1 -5368 2169 1567 783 156 62 25 chrX 153606184 153606344 -23367796 - MER57-int LTR ERV1 -6874 663 498 187 272 53 44 chrX 153606359 153606473 -23367667 - L2 LINE L2 -1485 1829 1715 1876 92 92 4 chrX 153606608 153606879 -23367261 + AluSx SINE Alu 1 295 -17 270 349 88 51 chrX 153609728 153609836 -23364304 - L2 LINE L2 -22 3250 3147 713 256 99 29 chrX 153609836 153610078 -23364062 - MIR SINE MIR -2 260 2 270 349 88 51 chrX 153610078 153610264 -23363876 - L2 LINE L2 -125 3147 2945 579 188 0 0 chrX 153610424 153610525 -23363615 - FLAM_A SINE Alu -10 132 32 182 194 0 0 chrX 153610846 153610877 -23363263 - L2 LINE L2 -259 3054 3024 328 297 123 13 chrX 153611721 153611876 -23362264 + MIR3 SINE MIR 10 181 -27 2214 164 20 3 chrX 153612405 153612795 -23361345 - MSTB LTR MaLR -2 424 28 188 347 53 0 chrX 153613719 153613794 -23360346 + L2 LINE L2 3194 3272 0 201 268 36 0 chrX 153613953 153614009 -23360131 - MIR3 SINE MIR -19 189 132 1906 122 4 0 chrX 153614107 153614121 -23360019 - AluSx SINE Alu -8 304 292 212 31 62 0 chrX 153614121 153614153 -23359987 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 1906 122 4 0 chrX 153614153 153614401 -23359739 - AluSx SINE Alu -20 292 41 237 300 63 24 chrX 153614622 153614740 -23359400 + MIR SINE MIR 12 138 -70 555 187 158 0 chrX 153614762 153614901 -23359239 - L1MB7 LINE L1 -10 6174 6014 263 295 18 54 chrX 153616005 153616117 -23358023 - MIR3 SINE MIR -97 111 4 274 239 80 71 chrX 153616786 153616899 -23357241 + L1MEd LINE L1 561 674 -5445 395 196 362 0 chrX 153617874 153618037 -23356103 - L2 LINE L2 -339 2975 2754 1138 206 49 45 chrX 153618132 153618419 -23355721 + MER92A LTR ERV1 31 318 -94 242 301 102 10 chrX 153618955 153619089 -23355051 - MIR3 SINE MIR -62 146 7 398 252 137 14 chrX 153620219 153620358 -23353782 - MIR SINE MIR 0 262 107 188 281 88 0 chrX 153620419 153620476 -23353664 - L2 LINE L2 -12 3260 3199 448 328 209 0 chrX 153621854 153622113 -23352027 - L3 LINE CR1 -94 1483 1171 203 320 97 10 chrX 153622193 153622296 -23351844 - L3 LINE CR1 -879 698 587 1384 224 65 58 chrX 153622947 153623184 -23350956 - L1M4 LINE L1 -2891 3255 3021 2004 136 6 25 chrX 153623184 153623500 -23350640 - AluJb SINE Alu -2 310 1 1384 224 65 58 chrX 153623500 153623781 -23350359 - L1M4 LINE L1 -3125 3021 2733 354 244 189 28 chrX 153624175 153624355 -23349785 - L2 LINE L2 0 3313 3105 4540 60 20 16 chrX 153624437 153625455 -23348685 - MER11A LTR ERVK 0 1266 1 1096 52 41 17 chrX 153625472 153625637 -23348503 - MER11A LTR ERVK -1001 265 1 886 179 0 31 chrX 153625652 153625814 -23348326 - FRAM SINE Alu -12 164 8 569 316 80 4 chrX 153625959 153626184 -23347956 - L2 LINE L2 -38 3234 2993 454 236 71 36 chrX 153626193 153626333 -23347807 - L2 LINE L2 0 3313 3169 2219 285 125 14 chrX 153626342 153626508 -23347632 + L2 LINE L2 1812 1958 -1355 1925 102 60 78 chrX 153626508 153626890 -23347250 - THE1C LTR MaLR 0 375 1 2219 285 125 14 chrX 153626890 153628069 -23346071 + L2 LINE L2 1958 3313 0 634 224 24 35 chrX 153628143 153628313 -23345827 - MER3 DNA MER1_type -11 198 31 2807 260 115 31 chrX 153628320 153629452 -23344688 - L2 LINE L2 -345 2969 1743 559 129 0 40 chrX 153629453 153629465 -23344675 - MER92B LTR ERV1 -431 205 194 2274 217 22 85 chrX 153629465 153630056 -23344084 + MLT2B3 LTR ERVL 1 554 0 559 129 0 40 chrX 153630056 153630144 -23343996 - MER92B LTR ERV1 -442 194 109 1853 155 22 74 chrX 153630149 153630555 -23343585 - MLT1B LTR MaLR 0 390 6 579 192 0 0 chrX 153630590 153630694 -23343446 - MER92B LTR ERV1 -532 104 1 5128 80 1 5 chrX 153631168 153631830 -23342310 - PABL_A LTR ERV1 0 660 1 183 222 156 0 chrX 153633430 153633475 -23340665 - L3 LINE CR1 -323 1254 1203 338 277 0 53 chrX 153634828 153635016 -23339124 + (CA)n Simple_repeat Simple_repeat 1 178 0 311 253 0 0 chrX 153635130 153635217 -23338923 + (CA)n Simple_repeat Simple_repeat 1 87 0 576 194 0 0 chrX 153637660 153637794 -23336346 + CT-rich Low_complexity Low_complexity 2 135 0 268 318 0 0 chrX 153641060 153641148 -23332992 + G-rich Low_complexity Low_complexity 1 88 0 305 308 14 0 chrX 153641313 153641521 -23332619 + (CCCCAA)n Simple_repeat Simple_repeat 1 210 0 2383 81 3 0 chrX 153641681 153641979 -23332161 - AluSx SINE Alu -13 299 1 1693 138 43 33 chrX 153643190 153643466 -23330674 + AluSg SINE Alu 1 279 -31 * 2629 50 0 3 chrX 153643465 153643766 -23330374 - AluY SINE Alu -11 300 1 1857 173 33 40 chrX 153644020 153644419 -23329721 - MSTD LTR MaLR 0 396 1 2117 179 102 41 chrX 153644449 153644686 -23329454 + MER92B LTR ERV1 1 222 -414 2326 64 28 0 chrX 153644686 153644968 -23329172 + AluSc SINE Alu 1 290 -19 2117 179 102 41 chrX 153644968 153645311 -23328829 + MER92B LTR ERV1 222 616 -20 2276 146 25 83 chrX 153645330 153645703 -23328437 - L1MA9 LINE L1 -7 6305 5912 2176 110 7 16 chrX 153645703 153646011 -23328129 - AluSg SINE Alu -5 305 1 2276 146 25 83 chrX 153646011 153646041 -23328099 - L1MA9 LINE L1 -400 5912 5882 1728 173 27 10 chrX 153646041 153646336 -23327804 + AluJb SINE Alu 1 300 -12 2276 146 25 83 chrX 153646336 153646487 -23327653 - L1MA9 LINE L1 -430 5882 5782 338 96 70 17 chrX 153646497 153646612 -23327528 + (TA)n Simple_repeat Simple_repeat 2 122 0 317 229 55 45 chrX 153646622 153646759 -23327381 - L1MC4 LINE L1 -1338 6984 1918 * 325 193 9 114 chrX 153646738 153646852 -23327288 - L1MC4 LINE L1 -4362 2064 1963 36 40 0 0 chrX 153646852 153646902 -23327238 + AT_rich Low_complexity Low_complexity 1 50 0 951 186 12 16 chrX 153646902 153647135 -23327005 - L1M4 LINE L1 -378 5789 5577 268 156 0 0 chrX 153647109 153647154 -23326986 + L1 LINE L1 4849 4893 -1253 * 5097 148 10 1 chrX 153647154 153647930 -23326210 + LTR39 LTR ERV1 1 783 0 309 283 45 42 chrX 153648443 153648678 -23325462 + HERVR LTR ERV1 1397 1620 -5056 265 361 30 27 chrX 153648956 153649291 -23324849 + HERVR LTR ERV1 956 1291 -5831 1208 148 177 57 chrX 153650369 153650686 -23323454 + THE1A LTR MaLR 1 355 0 261 183 0 33 chrX 153650816 153650876 -23323264 + HERVR LTR ERV1 2932 2989 -4767 2425 136 69 10 chrX 153651059 153651463 -23322677 - MSTA LTR MaLR 0 428 1 8708 182 19 11 chrX 153651463 153651563 -23322577 - MSTA-int LTR MaLR 0 1651 1553 3393 149 30 76 chrX 153651563 153652287 -23321853 + LTR8 LTR ERV1 1 691 0 8708 182 19 11 chrX 153652287 153653823 -23320317 - MSTA-int LTR MaLR -98 1553 1 2241 140 94 8 chrX 153653823 153654216 -23319924 - MSTA LTR MaLR 0 428 2 421 280 58 36 chrX 153654400 153654645 -23319495 + HERVR LTR ERV1 2693 3008 -4188 834 331 57 49 chrX 153654713 153655891 -23318249 + HERVR LTR ERV1 3038 4692 -3287 2640 133 52 9 chrX 153655891 153656357 -23317783 - LTR19A LTR ERV1 0 486 1 834 331 57 49 chrX 153656357 153656386 -23317754 + HERVR LTR ERV1 4692 4719 -3260 1938 143 0 48 chrX 153656615 153656930 -23317210 - AluJb SINE Alu -12 300 1 827 321 26 20 chrX 153657154 153657612 -23316528 + HERVR LTR ERV1 4697 5157 -1965 1260 108 20 5 chrX 153657712 153657907 -23316233 + MSTA LTR MaLR 1 198 -230 3550 86 2 0 chrX 153658341 153658806 -23315334 - MER41A LTR ERV1 -88 466 1 191 156 22 89 chrX 153658806 153658851 -23315289 + L2 LINE L2 1750 1791 -1523 6800 102 33 18 chrX 153658851 153659581 -23314559 - MER41A-int LTR ERV1 -47 5899 5147 2085 83 10 24 chrX 153659581 153659870 -23314270 - AluSg1 SINE Alu -11 298 14 6800 102 33 18 chrX 153659870 153660170 -23313970 - MER41A-int LTR ERV1 -799 5147 4853 * 8830 106 50 13 chrX 153660169 153662260 -23311880 - MER41A-int LTR ERV1 -1218 4728 2167 780 116 0 8 chrX 153662256 153662377 -23311763 - MER41A-int LTR ERV1 -3929 2017 1898 * 2242 122 57 0 chrX 153662372 153662725 -23311415 - MER41A-int LTR ERV1 -4182 1764 1392 3876 206 89 3 chrX 153662743 153663685 -23310455 + L1PA15 LINE L1 4043 5065 -1081 19924 40 14 0 chrX 153663686 153666875 -23307265 + L1PA5 LINE L1 2949 6148 -6 3330 159 12 7 chrX 153666897 153667469 -23306671 + L1PA15 LINE L1 5591 6165 0 3678 139 9 42 chrX 153667482 153668122 -23306018 + LTR39 LTR ERV1 165 783 0 2354 171 13 0 chrX 153668122 153668881 -23305259 + L1M2 LINE L1 4890 5658 -654 2484 213 18 51 chrX 153669547 153670218 -23303922 + MER31-int LTR ERV1 357 1005 -3931 1251 0 0 0 chrX 153670221 153670356 -23303784 + AluYa5/8 SINE Alu 173 307 -3 1438 134 34 89 chrX 153670358 153670738 -23303402 + MER31-int LTR ERV1 1001 1359 -3577 1230 211 0 0 chrX 153670738 153670947 -23303193 + AluJo SINE Alu 1 209 -103 433 127 25 0 chrX 153671009 153671088 -23303052 + MER31-int LTR ERV1 1366 1446 -3490 625 163 50 45 chrX 153671225 153671427 -23302713 + MER31-int LTR ERV1 1686 1888 -3048 1757 189 0 3 chrX 153671437 153671739 -23302401 + AluJo SINE Alu 1 301 -11 1405 206 32 50 chrX 153671754 153672156 -23301984 + L1M4 LINE L1 4799 5193 -953 1702 170 7 0 chrX 153673333 153673615 -23300525 - AluJb SINE Alu -28 284 1 237 33 0 0 chrX 153673894 153673924 -23300216 + (GA)n Simple_repeat Simple_repeat 1 30 0 574 261 0 0 chrX 153674234 153674364 -23299776 - MLT1H LTR MaLR -363 186 57 2029 84 0 0 chrX 153674387 153674637 -23299503 + AluY SINE Alu 27 276 -35 602 60 0 12 chrX 153674638 153674722 -23299418 + (TC)n Simple_repeat Simple_repeat 2 84 0 375 248 9 15 chrX 153674722 153674828 -23299312 + L1MC4 LINE L1 1998 6983 -1339 297 319 200 0 chrX 153675267 153675402 -23298738 - MIR SINE MIR -77 185 24 1038 138 0 6 chrX 153680478 153680637 -23293503 - FRAM SINE Alu -17 159 2 1354 240 19 17 chrX 153681969 153682328 -23291812 + LTR52 LTR ERVL 62 421 0 838 284 4 34 chrX 153682348 153682616 -23291524 + ERVL LTR ERVL 2299 2558 -2438 536 88 11 55 chrX 153682644 153682681 -23291459 + MSTC LTR MaLR 1 38 -390 3617 102 70 5 chrX 153682681 153683240 -23290900 - LTR61 LTR ERV1 0 595 1 536 88 11 55 chrX 153683240 153683293 -23290847 + MSTC LTR MaLR 38 87 -341 1826 145 16 16 chrX 153683537 153683854 -23290286 + MSTC LTR MaLR 112 428 0 3448 330 52 33 chrX 153683854 153686398 -23287742 + ERVL LTR ERVL 2577 5238 -521 2504 55 6 55 chrX 153686547 153686872 -23287268 - AluY SINE Alu -2 309 1 1026 319 74 10 chrX 153687027 153687432 -23286708 + LTR16B LTR ERVL 34 464 0 1323 147 8 48 chrX 153687615 153687958 -23286182 - LTR55 LTR ERV -5 543 141 2049 127 3 3 chrX 153687958 153688249 -23285891 + AluSx SINE Alu 1 291 -21 1323 147 8 48 chrX 153688249 153688385 -23285755 - LTR55 LTR ERV -407 141 1 203 283 206 0 chrX 153688500 153688592 -23285548 - L2 LINE L2 -2 3270 3160 256 309 14 72 chrX 153688715 153688854 -23285286 - L2 LINE L2 -218 3054 2924 257 295 19 38 chrX 153688857 153688962 -23285178 + L2 LINE L2 770 872 -2442 477 268 71 8 chrX 153689068 153689241 -23284899 - L1MA10 LINE L1 0 6334 5992 * 613 189 24 53 chrX 153689238 153689407 -23284733 - L1M4 LINE L1 -1840 4306 4143 258 325 30 24 chrX 153689699 153689865 -23284275 - L1ME LINE L1 -5901 169 3 544 287 78 19 chrX 153689867 153690125 -23284015 + L2 LINE L2 2502 2774 -540 21 0 0 0 chrX 153690127 153690148 -23283992 + AT_rich Low_complexity Low_complexity 1 21 0 2120 146 28 59 chrX 153690397 153690463 -23283677 - MLT2D LTR ERVL -1 413 347 228 35 0 0 chrX 153690463 153690492 -23283648 + (GA)n Simple_repeat Simple_repeat 2 30 0 2120 146 28 59 chrX 153690492 153690851 -23283289 - MLT2D LTR ERVL -67 347 1 336 346 18 57 chrX 153690860 153691088 -23283052 - HAL1b LINE L1 -14 1334 1116 1894 168 3 0 chrX 153691293 153691584 -23282556 - AluJo SINE Alu -20 292 1 1601 199 85 39 chrX 153692154 153692637 -23281503 + MLT1D LTR MaLR 1 505 0 1813 194 34 56 chrX 153693385 153693833 -23280307 + MER41B LTR ERV1 162 599 -36 347 257 97 56 chrX 153694632 153694776 -23279364 - HAL1 LINE L1 -1310 1197 1048 1018 16 79 0 chrX 153695486 153695613 -23278527 + MER85 DNA T2_type 1 137 -2 2082 145 0 7 chrX 153695818 153696115 -23278025 + AluJb SINE Alu 1 295 -17 6652 113 11 14 chrX 153697162 153698163 -23275977 + THE1C-int LTR MaLR 583 1580 0 1872 140 89 14 chrX 153698163 153698512 -23275628 + THE1C LTR MaLR 1 375 0 871 189 37 26 chrX 153698512 153698702 -23275438 + L1MC1 LINE L1 6122 6313 -20 416 270 82 0 chrX 153698903 153699099 -23275041 + LTR37B LTR ERV1 233 444 -24 27 0 0 0 chrX 153700470 153700497 -23273643 + AT_rich Low_complexity Low_complexity 1 27 0 2527 153 15 25 chrX 153700632 153701102 -23273038 - MLT1C LTR MaLR -2 465 1 719 210 101 27 chrX 153701279 153701498 -23272642 + MLT1F LTR MaLR 302 536 -6 499 299 150 25 chrX 153701509 153702149 -23271991 + L1ME3 LINE L1 5256 5970 -192 214 317 110 0 chrX 153702330 153702412 -23271728 + MER5A DNA MER1_type 43 133 -56 326 236 112 0 chrX 153702846 153702935 -23271205 + MIR3 SINE MIR 64 162 -46 418 279 69 23 chrX 153703080 153703254 -23270886 + MIR SINE MIR 47 227 -35 228 237 17 17 chrX 153703653 153703712 -23270428 + MER81 DNA DNA 36 94 -20 28 29 0 0 chrX 153704190 153704225 -23269915 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 153704358 153704380 -23269760 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 153704505 153704527 -23269613 + (CCG)n Simple_repeat Simple_repeat 3 24 0 228 180 40 0 chrX 153704813 153704863 -23269277 + G-rich Low_complexity Low_complexity 1 52 0 434 298 0 6 chrX 153708845 153709088 -23265052 + (TG)n Simple_repeat Simple_repeat 1 241 0 447 274 18 0 chrX 153709100 153709268 -23264872 + (TG)n Simple_repeat Simple_repeat 1 171 0 294 130 0 0 chrX 153709508 153709554 -23264586 + U2 snRNA snRNA 1 46 -142 1611 252 77 9 chrX 153709583 153710306 -23263834 - L1ME LINE L1 -429 5804 5005 1406 144 140 30 chrX 153710306 153710570 -23263570 + AluJo SINE Alu 1 293 -19 1611 252 77 9 chrX 153710570 153710707 -23263433 - L1ME LINE L1 -1228 5005 4879 951 297 100 35 chrX 153710712 153711579 -23262561 - L1MEc LINE L1 -5211 996 159 2861 75 20 15 chrX 153712355 153712757 -23261383 + MLT2A1 LTR ERVL 1 404 -40 350 247 45 45 chrX 153712853 153712942 -23261198 - L1MC4 LINE L1 -1339 6703 6615 274 149 0 0 chrX 153712942 153712989 -23261151 + MLT2A1 LTR ERVL 390 436 -8 300 211 0 0 chrX 153714198 153714274 -23259866 + (TG)n Simple_repeat Simple_repeat 1 76 0 214 319 22 11 chrX 153715125 153715216 -23258924 + (CGGGG)n Simple_repeat Simple_repeat 4 95 0 192 217 0 0 chrX 153715696 153715742 -23258398 - L2 LINE L2 -23 3249 3204 1274 234 11 57 chrX 153715761 153716115 -23258025 + MLT1A1 LTR MaLR 1 338 -27 604 209 9 0 chrX 153716104 153716219 -23257921 + MLT1A1 LTR MaLR 250 365 0 * 513 138 0 0 chrX 153716430 153716524 -23257616 + (GGA)n Simple_repeat Simple_repeat 3 96 0 288 248 44 9 chrX 153720827 153720940 -23253200 + C-rich Low_complexity Low_complexity 2 118 0 28 86 0 0 chrX 153721162 153721232 -23252908 + GC_rich Low_complexity Low_complexity 1 70 0 305 355 55 48 chrX 153722567 153723007 -23251133 - L1ME LINE L1 -375 5789 5347 2144 163 15 48 chrX 153723200 153723660 -23250480 + MER65A LTR ERV1 1 445 0 243 213 12 18 chrX 153723930 153724015 -23250125 + L1ME1 LINE L1 6095 6183 -1 239 370 143 14 chrX 153724374 153724807 -23249333 - L2 LINE L2 -1857 1457 969 2044 148 0 7 chrX 153725956 153726259 -23247881 - AluSx SINE Alu -11 301 1 362 296 15 15 chrX 153729023 153729155 -23244985 - MIR SINE MIR -36 226 95 2443 94 3 0 chrX 153729376 153729685 -23244455 + AluSp SINE Alu 1 310 -3 2879 132 16 53 chrX 153729894 153730387 -23243753 + MER1A DNA MER1_type 55 529 0 293 261 0 0 chrX 153730491 153730556 -23243584 + MER63 DNA MER1_type 698 762 -298 552 284 77 6 chrX 153733924 153734107 -23240033 + HAL1 LINE L1 3 198 -2309 719 244 33 6 chrX 153734135 153734315 -23239825 - LTR16C LTR ERVL -40 451 267 1801 297 134 21 chrX 153734434 153735538 -23238602 + L2 LINE L2 1708 2936 -378 1138 251 28 33 chrX 153735538 153735897 -23238243 + MLT1A2 LTR MaLR 1 357 -17 183 305 112 58 chrX 153735999 153736222 -23237918 + L2 LINE L2 3075 3309 -4 1390 307 78 27 chrX 153736224 153737090 -23237050 + HAL1 LINE L1 1334 2244 -263 512 258 6 16 chrX 153737090 153737272 -23236868 + (TG)n Simple_repeat Simple_repeat 1 180 0 258 251 114 55 chrX 153737301 153737500 -23236640 + HAL1 LINE L1 2276 2491 -16 231 36 0 0 chrX 153737500 153737528 -23236612 + (TG)n Simple_repeat Simple_repeat 2 29 0 258 251 114 55 chrX 153737528 153737547 -23236593 + HAL1 LINE L1 2491 2507 0 327 318 120 21 chrX 153738004 153738870 -23235270 - L1M4 LINE L1 -2919 3227 2276 1162 272 90 40 chrX 153738871 153739349 -23234791 - MLT1F1 LTR MaLR -2 565 64 332 196 111 18 chrX 153739600 153739706 -23234434 + MLT1H LTR MaLR 5 161 -388 718 162 8 0 chrX 153739814 153739931 -23234209 + FLAM_C SINE Alu 9 126 -17 2656 168 16 14 chrX 153740963 153741680 -23232460 + L1MA4 LINE L1 5019 5742 -558 5143 59 5 2 chrX 153741682 153742804 -23231336 + MER11A LTR ERVK 1 1265 -1 2784 166 39 13 chrX 153742804 153743347 -23230793 + L1MA4 LINE L1 5738 6294 -6 1019 160 34 10 chrX 153744349 153744555 -23229585 + L1MC1 LINE L1 6113 6323 -10 272 340 29 0 chrX 153744555 153744658 -23229482 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 188 196 0 20 chrX 153745128 153745179 -23228961 + (CA)n Simple_repeat Simple_repeat 2 51 0 534 269 17 6 chrX 153749269 153749444 -23224696 + L2 LINE L2 674 850 -2464 652 254 39 6 chrX 153749515 153749696 -23224444 - MIR SINE MIR -68 194 8 286 281 203 36 chrX 153749726 153750085 -23224055 + L2 LINE L2 872 1290 -2024 1438 147 4 0 chrX 153752501 153752726 -23221414 + L1PA15 LINE L1 5936 6161 -4 232 310 25 35 chrX 153752793 153752990 -23221150 - L1M4 LINE L1 -1069 5077 4883 466 319 63 33 chrX 153753294 153753836 -23220304 - L1M4 LINE L1 -1551 4595 4038 437 267 97 23 chrX 153753869 153754086 -23220054 - L1M4 LINE L1 -2213 3933 3701 13568 143 48 12 chrX 153754454 153756782 -23217358 - Tigger1 DNA MER2_type 0 2418 6 563 62 12 0 chrX 153756818 153756898 -23217242 + (TCTA)n Simple_repeat Simple_repeat 3 83 0 2106 62 21 103 chrX 153757503 153757843 -23216297 - AluYb8 SINE Alu -6 312 1 1318 207 16 32 chrX 153757910 153758224 -23215916 + AluJb SINE Alu 1 309 -3 355 130 0 0 chrX 153758224 153758278 -23215862 + L1MA3 LINE L1 6252 6305 0 951 269 4 13 chrX 153758337 153758575 -23215565 + MLT1G1 LTR MaLR 1 236 -359 328 313 107 68 chrX 153758858 153759809 -23214331 + L2 LINE L2 1235 2222 -1092 278 293 45 38 chrX 153759815 153759972 -23214168 + MER5A DNA MER1_type 7 164 -25 1884 193 19 9 chrX 153760437 153760921 -23213219 - L1MA4A LINE L1 -743 5403 4947 * 3471 170 136 12 chrX 153760916 153761668 -23212472 + L1MA4A LINE L1 5401 6245 -58 264 125 0 0 chrX 153762140 153762180 -23211960 - MADE1 DNA Mariner -40 40 1 664 211 47 42 chrX 153762851 153763041 -23211099 - L1M2 LINE L1 -596 5695 5505 496 185 99 27 chrX 153763063 153763232 -23210908 + L1MD2 LINE L1 5739 5916 -255 4361 180 3 4 chrX 153763232 153763986 -23210154 - ERVL LTR ERVL -382 5382 4630 297 0 0 0 chrX 153763998 153764031 -23210109 + (TG)n Simple_repeat Simple_repeat 1 33 0 1557 177 26 7 chrX 153764034 153764339 -23209801 + ERVL-B2 LTR ERVL 5443 5753 -11 1711 184 16 75 chrX 153764353 153764397 -23209743 + MLT2B2 LTR ERVL 1 46 -368 1887 135 5 95 chrX 153764397 153764767 -23209373 - MER1B DNA MER1_type 0 337 1 1711 184 16 75 chrX 153764767 153765151 -23208989 + MLT2B2 LTR ERVL 46 414 0 393 136 0 0 chrX 153765605 153765671 -23208469 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 442 288 77 57 chrX 153767419 153767770 -23206370 - MLT1I LTR MaLR -33 376 19 1763 123 12 0 chrX 153767815 153768068 -23206072 + AluSx SINE Alu 44 299 -13 280 297 84 25 chrX 153769268 153769470 -23204670 + MIR SINE MIR 13 226 -36 275 253 13 13 chrX 153773933 153774012 -23200128 + G-rich Low_complexity Low_complexity 5 83 0 515 238 11 39 chrX 153774507 153774688 -23199452 + G-rich Low_complexity Low_complexity 1 176 0 357 62 0 0 chrX 153775136 153775184 -23198956 + (TGGGGG)n Simple_repeat Simple_repeat 4 51 0 264 264 0 45 chrX 153775207 153775317 -23198823 + G-rich Low_complexity Low_complexity 3 107 0 1762 121 72 28 chrX 153776390 153776680 -23197460 + AluSx SINE Alu 3 305 -7 198 0 0 0 chrX 153777415 153777437 -23196703 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 258 32 0 0 chrX 153777436 153777467 -23196673 + (GA)n Simple_repeat Simple_repeat 2 32 0 1981 136 0 0 chrX 153777472 153777745 -23196395 - AluSx SINE Alu -39 273 1 876 270 38 53 chrX 153778876 153779405 -23194735 - L1MC5 LINE L1 -76 7885 7365 * 2974 204 25 58 chrX 153779402 153779889 -23194251 - L1MC3 LINE L1 -938 6847 6394 216 0 0 0 chrX 153779889 153779913 -23194227 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2974 204 25 58 chrX 153779913 153780211 -23193929 - L1MC3 LINE L1 -1391 6394 6088 1815 186 5 38 chrX 153780221 153780592 -23193548 - MLT1A1 LTR MaLR 0 365 7 3143 221 57 18 chrX 153780602 153781669 -23192471 - L1MC3 LINE L1 -748 5398 4978 313 149 11 23 chrX 153781688 153781775 -23192365 + (TTA)n Simple_repeat Simple_repeat 2 87 0 526 185 136 12 chrX 153781781 153781943 -23192197 - L1MC3 LINE L1 -1182 4964 4783 441 294 11 34 chrX 153781947 153782124 -23192016 + MLT1A2 LTR MaLR 13 185 -189 710 233 17 17 chrX 153782154 153782357 -23191783 + MLT1A2 LTR MaLR 187 374 0 239 206 103 31 chrX 153782357 153782454 -23191686 - L1M4 LINE L1 -1067 5079 4976 1526 121 0 9 chrX 153782462 153782694 -23191446 - L1PA8 LINE L1 -4 6168 5939 1675 215 24 3 chrX 153782725 153783065 -23191075 + MLT2C1 LTR ERVL 3 349 -48 1253 253 95 62 chrX 153783128 153783143 -23190997 - L1M4 LINE L1 -1202 4944 4931 1964 146 29 35 chrX 153783143 153783520 -23190620 - THE1C LTR MaLR 0 375 1 9775 124 34 31 chrX 153783520 153785094 -23189046 - THE1C-int LTR MaLR 0 1580 2 1905 138 35 43 chrX 153785095 153785471 -23188669 - THE1C LTR MaLR 0 375 3 1253 253 95 62 chrX 153785471 153785701 -23188439 - L1M4 LINE L1 -1215 4931 4710 349 20 20 20 chrX 153785701 153785752 -23188388 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 7969 12 2 0 chrX 153785752 153786902 -23187238 - L1PA3 LINE L1 -10 6145 4999 1253 253 95 62 chrX 153786902 153787458 -23186682 - L1M4 LINE L1 -1435 4711 4111 7538 88 5 26 chrX 153787819 153788878 -23185262 - MER11C LTR ERVK -35 1036 1 1784 186 22 48 chrX 153790458 153790989 -23183151 + MLT2A2 LTR ERVL 1 413 -40 231 161 11 23 chrX 153790989 153791076 -23183064 + (TA)n Simple_repeat Simple_repeat 2 87 0 315 0 0 0 chrX 153791085 153791120 -23183020 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 106 96 0 chrX 153791120 153791161 -23182979 + MLT2A2 LTR ERVL 397 453 0 417 141 0 0 chrX 153791424 153791495 -23182645 + (TG)n Simple_repeat Simple_repeat 2 72 0 1956 225 23 61 chrX 153793575 153793898 -23180242 - MLT2B3 LTR ERVL -5 549 256 2218 108 3 0 chrX 153793898 153794193 -23179947 + AluSg SINE Alu 1 296 -14 1956 225 23 61 chrX 153794193 153794439 -23179701 - MLT2B3 LTR ERVL -298 256 2 2309 71 7 3 chrX 153795260 153795573 -23178567 + AluY SINE Alu 1 314 0 268 264 146 49 chrX 153795603 153795747 -23178393 - MIR SINE MIR -77 185 28 2218 104 7 0 chrX 153795802 153796287 -23177853 - AluSp SINE Alu 0 487 1 1450 214 6 3 chrX 153796396 153796714 -23177426 - L1MB1 LINE L1 -5 6163 5845 2209 84 61 10 chrX 153798108 153798405 -23175735 - AluSq SINE Alu -1 312 1 387 61 15 15 chrX 153799302 153799319 -23174821 + L1PA4 LINE L1 5838 5854 -301 2215 23 0 4 chrX 153799319 153799580 -23174560 - L1PA4 LINE L1 -3 6152 5893 387 61 15 15 chrX 153799580 153799630 -23174510 + L1PA4 LINE L1 5853 5897 -258 352 300 88 12 chrX 153801340 153801510 -23172630 + L2 LINE L2 668 850 -2464 614 271 42 51 chrX 153801533 153801769 -23172371 - MIR SINE MIR -28 234 1 1715 276 182 31 chrX 153801839 153803081 -23171059 + L2 LINE L2 931 2359 -955 22 56 0 0 chrX 153803714 153803750 -23170390 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chrX 153804332 153804361 -23169779 + AT_rich Low_complexity Low_complexity 1 29 0 286 262 172 50 chrX 153808065 153808473 -23165667 - L1MB1 LINE L1 -407 5763 5299 332 276 93 98 chrX 153808514 153808611 -23165529 - L1MB1 LINE L1 -1027 5119 5023 936 75 45 0 chrX 153808611 153808745 -23165395 - L1PA13 LINE L1 -3 6160 6021 332 276 93 98 chrX 153808745 153809402 -23164738 - L1MB1 LINE L1 -1123 5023 4369 232 171 0 0 chrX 153809442 153809483 -23164657 - Tigger1 DNA MER2_type -1113 1305 1265 13007 154 33 34 chrX 153809729 153812146 -23161994 - Tigger1 DNA MER2_type 0 2418 4 934 97 7 7 chrX 153812173 153812327 -23161813 + (TCTA)n Simple_repeat Simple_repeat 4 157 0 1225 251 7 7 chrX 153812967 153813266 -23160874 + AluJb SINE Alu 1 299 -13 349 61 0 0 chrX 153813266 153813315 -23160825 + L1MA2 LINE L1 6252 6300 -4 22 0 0 0 chrX 153813322 153813344 -23160796 + AT_rich Low_complexity Low_complexity 1 22 0 1488 261 111 22 chrX 153813380 153813885 -23160255 + MLT1G1 LTR MaLR 1 550 -45 570 312 100 45 chrX 153814181 153814941 -23159199 + L2 LINE L2 1415 2216 -1098 279 290 30 59 chrX 153814959 153815128 -23159012 + MER5A DNA MER1_type 7 170 -19 1720 198 22 19 chrX 153815583 153815993 -23158147 - L1M1 LINE L1 -743 5403 5022 2328 64 0 0 chrX 153815993 153816346 -23157794 - AluY SINE Alu 0 353 1 1720 198 22 19 chrX 153816346 153816423 -23157717 - L1M1 LINE L1 -1124 5022 4947 * 3692 189 77 26 chrX 153816410 153816829 -23157311 + L1MA4A LINE L1 5393 5789 -516 207 69 0 0 chrX 153816829 153816858 -23157282 + (TG)n Simple_repeat Simple_repeat 1 29 0 3692 189 77 26 chrX 153816858 153817296 -23156844 + L1MA4A LINE L1 5789 6304 -1 338 231 70 39 chrX 153817368 153817524 -23156616 - L1ME4a LINE L1 -6 6115 5955 2761 226 24 57 chrX 153818503 153819312 -23154828 + L1MB5 LINE L1 5385 6166 -8 4153 152 16 7 chrX 153819506 153820284 -23153856 + L1PB3 LINE L1 5173 5957 -197 729 186 0 0 chrX 153820782 153821076 -23153064 + (TG)n Simple_repeat Simple_repeat 1 294 0 427 212 53 24 chrX 153822602 153822893 -23151247 + (TCTA)n Simple_repeat Simple_repeat 1 299 0 278 215 13 0 chrX 153822943 153823022 -23151118 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 459 0 0 0 chrX 153823639 153823690 -23150450 + (TG)n Simple_repeat Simple_repeat 1 51 0 266 73 24 0 chrX 153823690 153823731 -23150409 + (GA)n Simple_repeat Simple_repeat 1 42 0 198 0 0 0 chrX 153824671 153824693 -23149447 + (TC)n Simple_repeat Simple_repeat 1 22 0 302 0 26 0 chrX 153824705 153824743 -23149397 + (GA)n Simple_repeat Simple_repeat 2 40 0 239 321 57 0 chrX 153833688 153833794 -23140346 + MER69 DNA AcHobo 95 206 -2320 287 314 120 21 chrX 153834851 153835042 -23139098 + HERV16 LTR ERVL 500 709 -4287 1568 172 0 18 chrX 153835074 153835353 -23138787 + AluJo SINE Alu 21 294 -18 360 368 87 21 chrX 153835480 153835907 -23138233 + HERV16 LTR ERVL 850 1304 -3692 265 371 19 0 chrX 153836204 153836309 -23137831 + HERV16 LTR ERVL 1688 1794 -3202 3835 257 29 76 chrX 153836587 153837080 -23137060 + L1MB3 LINE L1 3258 3773 -2373 724 217 0 0 chrX 153837080 153837218 -23136922 + FRAM SINE Alu 1 40 0 3835 257 29 76 chrX 153837218 153838381 -23135759 + L1MB3 LINE L1 3773 4893 -1253 687 250 41 49 chrX 153838678 153838922 -23135218 + L2 LINE L2 315 556 -2758 306 241 24 0 chrX 153838928 153839011 -23135129 + MER53 DNA DNA 1 85 -104 25 0 0 0 chrX 153840942 153840967 -23133173 + AT_rich Low_complexity Low_complexity 1 25 0 2647 190 43 40 chrX 153840973 153841098 -23133042 + L1MB3 LINE L1 5573 5696 -487 1713 166 0 0 chrX 153841098 153841414 -23132726 - AluJo SINE Alu 0 316 1 2647 190 43 40 chrX 153841414 153841893 -23132247 + L1MB3 LINE L1 5696 6180 -3 191 347 0 0 chrX 153842713 153842785 -23131355 - L2 LINE L2 0 3272 3201 188 271 70 54 chrX 153842922 153843051 -23131089 - L2 LINE L2 -194 3078 2948 316 295 87 47 chrX 153843148 153843297 -23130843 - MER58 DNA MER1_type -83 258 104 1026 285 67 60 chrX 153843297 153843864 -23130276 - L1MC/D LINE L1 -744 5402 5185 3221 87 9 7 chrX 153843865 153844291 -23129849 - MSTA LTR MaLR -1 427 1 1637 249 134 44 chrX 153844414 153845070 -23129070 - MER50 LTR ERV1 -19 715 1 281 310 8 39 chrX 153845107 153845236 -23128904 - L2 LINE L2 -569 2745 2621 237 262 117 19 chrX 153845521 153845624 -23128516 + L2 LINE L2 3121 3233 -39 207 100 0 0 chrX 153845771 153845801 -23128339 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 1113 248 46 65 chrX 153846590 153847005 -23127135 - MLT1C LTR MaLR -16 451 45 275 59 0 0 chrX 153847307 153847341 -23126799 - MLT1D LTR MaLR -73 432 399 1094 206 76 24 chrX 153847569 153848003 -23126137 + MLT1D LTR MaLR 1 505 0 1307 196 10 37 chrX 153848058 153848354 -23125786 - L1MB5 LINE L1 -8 6166 5879 2614 164 7 11 chrX 153848361 153848813 -23125327 - L1MB3 LINE L1 0 6183 5734 225 305 23 13 chrX 153848861 153848998 -23125142 - L3 LINE CR1 -692 885 683 198 0 0 0 chrX 153849381 153849403 -23124737 + (GA)n Simple_repeat Simple_repeat 1 22 0 2327 97 3 0 chrX 153849535 153849846 -23124294 + AluSp SINE Alu 1 312 -1 238 250 40 40 chrX 153849859 153849935 -23124205 + MER5B DNA MER1_type 102 177 -1 1349 86 4 81 chrX 153849963 153850197 -23123943 + L1M1 LINE L1 5535 5750 -550 505 306 69 43 chrX 153850263 153850929 -23123211 + L1ME4a LINE L1 5310 5992 -129 263 312 32 11 chrX 153851019 153851112 -23123028 - MIR SINE MIR -132 130 36 317 82 20 0 chrX 153851137 153851186 -23122954 + (TC)n Simple_repeat Simple_repeat 1 50 0 288 293 115 11 chrX 153851880 153852071 -23122069 + L2 LINE L2 2326 2536 -778 8780 147 17 30 chrX 153852796 153853678 -23120462 + L1MA5A LINE L1 3644 4537 -1760 2224 141 30 30 chrX 153853678 153854041 -23120099 - THE1B LTR MaLR -1 363 1 8780 147 17 30 chrX 153854041 153854286 -23119854 + L1MA5A LINE L1 4537 4784 -1513 2404 154 11 49 chrX 153854286 153854735 -23119405 + MSTB1 LTR MaLR 1 432 0 8780 147 17 30 chrX 153854735 153856306 -23117834 + L1MA5A LINE L1 4784 6293 -4 356 198 248 0 chrX 153856742 153856843 -23117297 + MER58B DNA MER1_type 216 341 0 330 256 48 40 chrX 153857204 153857329 -23116811 + MIR3 SINE MIR 83 208 0 190 221 52 65 chrX 153857340 153857417 -23116723 - MIR SINE MIR -165 97 22 806 238 54 45 chrX 153857529 153857865 -23116275 + L2 LINE L2 2919 3257 -56 262 233 81 64 chrX 153858444 153858616 -23115524 + L2 LINE L2 1713 1887 -1427 251 390 64 11 chrX 153858622 153858889 -23115251 + L2 LINE L2 2202 2482 -832 * 263 261 169 21 chrX 153858878 153859020 -23115120 + MIR SINE MIR 100 262 0 * 370 352 73 26 chrX 153859018 153859362 -23114778 + L2 LINE L2 2458 2817 -497 321 226 0 0 chrX 153859447 153859509 -23114631 - L2 LINE L2 0 3272 3211 221 244 200 43 chrX 153860084 153860199 -23113941 + L2 LINE L2 3180 3312 -1 343 265 40 15 chrX 153860385 153860519 -23113621 + MIR SINE MIR 39 176 -32 268 325 48 8 chrX 153861071 153861197 -23112943 - MER5A DNA MER1_type -26 163 33 278 125 49 0 chrX 153861700 153861757 -23112383 - MIR SINE MIR -41 167 107 465 357 30 0 chrX 153861864 153862032 -23112108 - MIR SINE MIR -48 214 42 722 270 28 14 chrX 153862683 153862898 -23111242 + Charlie1b DNA MER1_type 3 220 -303 513 196 41 123 chrX 153862898 153863117 -23111023 + Charlie1b DNA MER1_type 322 522 -1 183 42 0 0 chrX 153863181 153863205 -23110935 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1361 234 116 39 chrX 153863494 153863926 -23110214 - MLT1C LTR MaLR 0 467 3 2010 221 64 28 chrX 153864693 153865226 -23108914 - MLT1E2 LTR MaLR -24 602 51 500 330 9 31 chrX 153866402 153866626 -23107514 + MIR SINE MIR 24 242 -20 338 277 0 53 chrX 153870660 153870848 -23103292 + (CA)n Simple_repeat Simple_repeat 1 178 0 311 253 0 0 chrX 153870962 153871049 -23103091 + (CA)n Simple_repeat Simple_repeat 1 87 0 306 87 0 157 chrX 153874477 153874649 -23099491 + (CACCT)n Simple_repeat Simple_repeat 1 145 0 * 368 320 0 6 chrX 153874521 153874699 -23099441 + CT-rich Low_complexity Low_complexity 2 178 0 1468 248 83 25 chrX 153876747 153877425 -23096715 - L1MEc LINE L1 -2366 3714 2998 * 2550 253 87 26 chrX 153877415 153879075 -23095065 - L1MEc LINE L1 -3478 2602 877 11566 178 13 2 chrX 153879076 153882008 -23092132 - L1PA14 LINE L1 0 7599 4627 3996 119 21 14 chrX 153882008 153882577 -23091563 - L1PA14 LINE L1 -7008 573 1 302 149 117 85 chrX 153882577 153882671 -23091469 - L1MEc LINE L1 -5215 855 759 485 299 46 84 chrX 153882820 153883081 -23091059 - L2 LINE L2 0 3272 3022 2147 127 42 36 chrX 153883272 153883633 -23090507 - THE1B LTR MaLR -1 363 1 599 283 62 17 chrX 153883837 153884014 -23090126 + MIR SINE MIR 77 261 -1 303 182 18 0 chrX 153884092 153884147 -23089993 - L2 LINE L2 0 3313 3258 1093 204 74 16 chrX 153884189 153884498 -23089642 + Charlie4a DNA MER1_type 9 335 -173 629 218 45 170 chrX 153884589 153884714 -23089426 - L1ME LINE L1 -5417 653 514 261 0 0 0 chrX 153884714 153884743 -23089397 + (TGG)n Simple_repeat Simple_repeat 3 31 0 629 218 45 170 chrX 153884743 153885040 -23089100 - L1ME LINE L1 -5556 514 284 433 290 72 91 chrX 153885114 153885500 -23088640 - LTR67 LTR ERVL -136 421 43 473 262 123 0 chrX 153885561 153885748 -23088392 + L1M4 LINE L1 3240 3449 -2697 1137 152 86 0 chrX 153885750 153885960 -23088180 - Tigger1 DNA MER2_type 0 2418 2191 425 193 16 127 chrX 153885965 153886114 -23088026 - MLT1A1 LTR MaLR -117 279 86 309 153 181 28 chrX 153886178 153886250 -23087890 - MLT1A1 LTR MaLR -345 83 1 260 191 21 0 chrX 153886250 153886296 -23087844 + MSTB2 LTR MaLR 411 457 0 775 248 80 37 chrX 153886296 153886519 -23087621 + L1ME1 LINE L1 5852 6093 -73 333 0 0 0 chrX 153886519 153886556 -23087584 + (TG)n Simple_repeat Simple_repeat 1 37 0 775 248 80 37 chrX 153886556 153886631 -23087509 + L1ME1 LINE L1 6093 6163 -3 * 5980 109 59 3 chrX 153886621 153887546 -23086594 + L1PA16 LINE L1 5189 6165 -1 239 148 0 74 chrX 153887552 153887606 -23086534 - L1MC4 LINE L1 -1334 6708 6659 225 154 0 0 chrX 153887654 153887693 -23086447 + (CATATA)n Simple_repeat Simple_repeat 5 43 0 2869 189 52 0 chrX 153887705 153888278 -23085862 + L1ME2 LINE L1 5323 5925 -239 301 280 0 0 chrX 153888370 153888445 -23085695 + (TTCG)n Simple_repeat Simple_repeat 2 76 0 236 214 114 29 chrX 153890270 153890340 -23083800 + MER5A DNA MER1_type 35 110 -79 513 0 0 0 chrX 153893153 153893210 -23080930 + (TG)n Simple_repeat Simple_repeat 2 58 0 211 288 68 0 chrX 153893446 153893505 -23080635 + MIR SINE MIR 88 150 -58 397 279 184 44 chrX 153893627 153893884 -23080256 - L2 LINE L2 0 3313 3093 1611 151 20 33 chrX 153893884 153894183 -23079957 + AluJb SINE Alu 1 295 -17 397 279 184 44 chrX 153894183 153894312 -23079828 - L2 LINE L2 -220 3093 2873 4218 257 127 33 chrX 153895534 153897700 -23076440 - L1MEc LINE L1 -3823 2401 35 288 224 0 106 chrX 153900324 153900503 -23073637 + (TTGGGG)n Simple_repeat Simple_repeat 1 160 0 214 250 20 70 chrX 153900637 153900737 -23073403 + (TTGGGG)n Simple_repeat Simple_repeat 2 96 0 399 270 90 27 chrX 153902494 153902702 -23071438 - L1ME LINE L1 -470 5651 5433 189 175 25 0 chrX 153902748 153902788 -23071352 - L3 LINE CR1 -20 1557 1517 29 90 0 0 chrX 153902935 153903013 -23071127 + AT_rich Low_complexity Low_complexity 1 78 0 295 329 0 0 chrX 153903634 153903713 -23070427 + MIR SINE MIR 107 185 -77 243 234 16 16 chrX 153903823 153903887 -23070253 - MIR SINE MIR -126 82 19 464 260 0 0 chrX 153905965 153906069 -23068071 + U13 snRNA snRNA 1 104 0 359 231 83 58 chrX 153907295 153907416 -23066724 + L2 LINE L2 3142 3265 -7 393 248 190 7 chrX 153909046 153909183 -23064957 - L2 LINE L2 -5 3267 3106 2171 118 72 29 chrX 153910963 153911311 -23062829 + THE1B LTR MaLR 1 363 -1 12262 86 2 18 chrX 153911311 153911363 -23062777 + THE1B-int LTR MaLR 2 53 -1527 4559 42 62 32 chrX 153911363 153911955 -23062185 + LTR66 LTR ERVL 1 610 0 12262 86 2 18 chrX 153911955 153912775 -23061365 + THE1B-int LTR MaLR 53 839 -741 1841 136 36 0 chrX 153912775 153913054 -23061086 + AluSx SINE Alu 1 289 -23 12262 86 2 18 chrX 153913054 153913785 -23060355 + THE1B-int LTR MaLR 839 1580 0 2045 129 75 31 chrX 153913785 153914134 -23060006 + THE1B LTR MaLR 1 364 0 310 167 0 0 chrX 153914529 153914589 -23059551 + Alu SINE Alu 243 302 0 24 53 0 0 chrX 153914631 153914669 -23059471 + AT_rich Low_complexity Low_complexity 1 38 0 1735 170 0 20 chrX 153914931 153915231 -23058909 + AluJb SINE Alu 1 294 -18 375 278 38 8 chrX 153915529 153915662 -23058478 - L1MC/D LINE L1 -2007 5801 5665 330 239 65 52 chrX 153915686 153915841 -23058299 - MLT1J1 LTR MaLR -4 442 286 245 230 172 23 chrX 153915874 153915961 -23058179 - MER5C DNA MER1_type 0 324 225 6017 119 21 10 chrX 153916012 153916906 -23057234 + MER49 LTR ERV1 1 904 -19 295 248 37 64 chrX 153917131 153917240 -23056900 - L1MC/D LINE L1 -2164 5644 5539 278 209 35 70 chrX 153917295 153917410 -23056730 - L1MC/D LINE L1 -2385 5423 5313 2463 68 0 0 chrX 153917509 153917819 -23056321 - AluY SINE Alu -1 310 1 492 298 39 76 chrX 153917824 153918131 -23056009 - L1MC/D LINE L1 -940 5206 4911 222 162 257 108 chrX 153918168 153918242 -23055898 + L2 LINE L2 3192 3276 -37 270 81 0 0 chrX 153918256 153918293 -23055847 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 470 286 116 19 chrX 153918313 153918683 -23055457 - L1MC/D LINE L1 -1310 4836 4431 949 306 62 21 chrX 153918973 153919549 -23054591 - L1MC/D LINE L1 -2200 3946 3347 1757 126 0 0 chrX 153919550 153919804 -23054336 - AluSx SINE Alu -17 295 42 29 0 0 0 chrX 153919994 153920023 -23054117 + AT_rich Low_complexity Low_complexity 1 29 0 337 316 105 36 chrX 153920038 153920564 -23053576 - L1MC/D LINE L1 -3313 2833 2272 543 230 156 79 chrX 153920636 153921014 -23053126 + MLT1J LTR MaLR 105 511 0 374 161 12 25 chrX 153921119 153921200 -23052940 - L1MC5 LINE L1 -52 7909 7830 381 43 0 0 chrX 153921216 153921263 -23052877 + (CA)n Simple_repeat Simple_repeat 2 48 0 304 307 36 0 chrX 153921264 153921404 -23052736 - L1MC4a LINE L1 -1875 5933 5789 1119 289 86 21 chrX 153921414 153922263 -23051877 - L1MC4a LINE L1 -767 5379 4755 416 176 23 78 chrX 153922269 153922580 -23051560 + (TTATA)n Simple_repeat Simple_repeat 1 293 0 375 158 35 82 chrX 153922643 153922814 -23051326 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 216 179 21 84 chrX 153922833 153922928 -23051212 + (TTATA)n Simple_repeat Simple_repeat 4 92 0 496 301 46 23 chrX 153922954 153923303 -23050837 - L1MC4a LINE L1 -1444 4702 4346 1968 29 0 21 chrX 153923356 153923629 -23050511 - AluY SINE Alu 0 311 59 1044 161 0 0 chrX 154123629 154123790 -22850350 + AluJb SINE Alu 134 294 -18 1140 267 102 26 chrX 154123795 154124349 -22849791 - L1MC4 LINE L1 -298 7744 7234 1686 185 65 44 chrX 154124349 154124607 -22849533 - MER7A DNA MER2_type -2692 346 80 1715 167 31 0 chrX 154124607 154124895 -22849245 + AluJb SINE Alu 1 297 -15 1686 185 65 44 chrX 154124895 154124976 -22849164 - MER7A DNA MER2_type -2958 80 2 1140 267 102 26 chrX 154124976 154125695 -22848445 - L1MC4 LINE L1 -808 7234 6163 390 308 94 18 chrX 154125844 154126068 -22848072 + L1ME3A LINE L1 4532 4772 -1374 1952 144 3 10 chrX 154126068 154126380 -22847760 + AluJb SINE Alu 1 310 -2 261 250 43 0 chrX 154126389 154126481 -22847659 + L1ME3A LINE L1 4853 4948 -1198 * 590 318 138 12 chrX 154126474 154126902 -22847238 + L1ME3A LINE L1 5470 5951 -219 189 232 21 141 chrX 154127223 154127365 -22846775 - MIR3 SINE MIR -26 182 58 2250 85 0 10 chrX 154128179 154128485 -22845655 - AluSg SINE Alu -7 303 1 309 335 141 5 chrX 154130895 154131101 -22843039 + L2 LINE L2 2323 2556 -758 438 168 46 84 chrX 154131101 154131232 -22842908 + MLT1E2 LTR MaLR 3 128 -498 277 194 16 0 chrX 154131328 154131390 -22842750 + MLT1E2 LTR MaLR 358 420 -206 405 179 24 0 chrX 154131423 154131507 -22842633 - L1MD2 LINE L1 -16 6343 6258 583 153 0 0 chrX 154131522 154131607 -22842533 + AluJ/FLAM SINE Alu 2 86 -226 3507 175 16 44 chrX 154131632 154132329 -22841811 - L1MB7 LINE L1 -54 6130 5459 2274 103 0 0 chrX 154132329 154132629 -22841511 - AluSx SINE Alu -12 300 1 3507 175 16 44 chrX 154132629 154132769 -22841371 - L1MB7 LINE L1 -725 5459 5317 3083 181 23 60 chrX 154134230 154134965 -22839175 - L1MB7 LINE L1 -810 5336 4576 366 23 0 0 chrX 154134965 154135008 -22839132 + (TTTTC)n Simple_repeat Simple_repeat 3 45 0 1144 60 0 33 chrX 154135016 154135200 -22838940 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 3083 181 23 60 chrX 154135200 154135273 -22838867 - L1MB7 LINE L1 -1577 4569 4549 252 0 0 0 chrX 154136199 154136227 -22837913 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 939 208 142 41 chrX 154136227 154136599 -22837541 + MLT1C LTR MaLR 44 459 -8 395 311 67 31 chrX 154136791 154137016 -22837124 - ERVL LTR ERVL -2961 2803 2571 684 183 209 0 chrX 154137643 154137834 -22836306 - L1MB7 LINE L1 0 6184 5954 2017 94 0 22 chrX 154138043 154138360 -22835780 + AluSx SINE Alu 12 322 0 288 238 0 24 chrX 154139254 154139338 -22834802 + (TG)n Simple_repeat Simple_repeat 1 82 0 192 231 0 0 chrX 154139649 154139701 -22834439 + (CA)n Simple_repeat Simple_repeat 1 52 0 262 314 72 67 chrX 154139817 154139990 -22834150 - L2 LINE L2 -454 2860 2684 1403 239 162 20 chrX 154139990 154140429 -22833711 + MLT1D LTR MaLR 1 501 -4 262 314 72 67 chrX 154140429 154140478 -22833662 - L2 LINE L2 -630 2684 2637 244 191 43 0 chrX 154140790 154140837 -22833303 - L2 LINE L2 -3 3310 3262 271 119 0 0 chrX 154141224 154141266 -22832874 - Alu SINE Alu -261 42 1 2158 108 0 0 chrX 154141998 154142294 -22831846 - AluSx SINE Alu -16 296 1 2308 195 79 2 chrX 154142716 154143182 -22830958 + MLT1D LTR MaLR 1 502 -3 972 137 0 0 chrX 154143441 154143580 -22830560 - FLAM_C SINE Alu -4 139 1 347 323 174 0 chrX 154143927 154144082 -22830058 + MER5A DNA MER1_type 4 185 -4 2208 115 0 10 chrX 154145010 154145324 -22828816 + AluJb SINE Alu 1 311 -1 461 281 242 10 chrX 154146535 154146845 -22827295 - L1MD2 LINE L1 0 6359 5978 233 111 0 0 chrX 154147478 154147514 -22826626 - L2 LINE L2 -348 2966 2931 211 273 39 0 chrX 154147558 154147635 -22826505 - L2 LINE L2 -519 2795 2716 198 279 0 44 chrX 154148232 154148300 -22825840 - MER5B DNA MER1_type -4 174 110 1508 231 74 14 chrX 154149733 154150165 -22823975 - L1MB3 LINE L1 -4 6179 5722 2238 125 0 0 chrX 154150170 154150482 -22823658 - AluSx SINE Alu 0 312 1 315 303 104 101 chrX 154150575 154150865 -22823275 - L1MEd LINE L1 -5665 454 161 2289 242 48 14 chrX 154150865 154151444 -22822696 - MER77 LTR ERV1 -4 601 3 315 303 104 101 chrX 154151444 154151490 -22822650 - L1MEd LINE L1 -5958 161 117 356 287 26 9 chrX 154151630 154151745 -22822395 + MIR3 SINE MIR 4 120 -88 191 245 57 0 chrX 154153160 154153213 -22820927 - MIR SINE MIR -3 259 204 2071 105 0 4 chrX 154153353 154153630 -22820510 + AluSx SINE Alu 1 276 -36 1574 126 75 9 chrX 154153655 154154022 -22820118 + L1M2 LINE L1 5219 5607 -693 1142 199 0 5 chrX 154154022 154154243 -22819897 + AluJo SINE Alu 1 220 -92 302 78 39 52 chrX 154154243 154154320 -22819820 + (CAAGA)n Simple_repeat Simple_repeat 2 77 0 393 149 0 0 chrX 154154466 154154533 -22819607 + (TCCC)n Simple_repeat Simple_repeat 1 67 0 202 143 29 0 chrX 154154536 154154571 -22819569 + T-rich Low_complexity Low_complexity 3 38 0 1511 148 4 25 chrX 154154571 154154815 -22819325 - AluJo SINE Alu -73 239 1 753 295 23 0 chrX 154155203 154155420 -22818720 + MLT1C LTR MaLR 192 413 -54 411 149 21 11 chrX 154155744 154155838 -22818302 + CT-rich Low_complexity Low_complexity 5 99 0 354 45 0 0 chrX 154155839 154155883 -22818257 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 2139 73 18 0 chrX 154155892 154156167 -22817973 - AluSx SINE Alu -32 280 1 2839 180 90 0 chrX 154156532 154157142 -22816998 + L1MB3 LINE L1 5518 6182 -1 562 113 0 0 chrX 154157169 154157249 -22816891 - AluJ/FLAM SINE Alu -227 85 6 207 279 0 0 chrX 154159480 154159523 -22814617 + (CA)n Simple_repeat Simple_repeat 1 43 0 246 219 0 0 chrX 154159855 154159919 -22814221 + CT-rich Low_complexity Low_complexity 2 65 0 274 258 0 0 chrX 154160047 154160113 -22814027 + (TG)n Simple_repeat Simple_repeat 1 66 0 232 129 0 48 chrX 154160492 154160554 -22813586 + (GGAA)n Simple_repeat Simple_repeat 1 59 0 544 309 192 17 chrX 154161081 154161498 -22812642 + L2 LINE L2 1898 2387 -927 299 263 38 0 chrX 154162290 154162370 -22811770 + MER58B DNA MER1_type 233 315 -26 782 152 0 36 chrX 154162509 154162647 -22811493 + FLAM_C SINE Alu 1 133 0 225 286 167 12 chrX 154163238 154163322 -22810818 + L2 LINE L2 3176 3272 0 297 320 127 66 chrX 154163740 154164284 -22809856 + L2 LINE L2 2174 2750 -564 187 235 15 73 chrX 154164704 154164772 -22809368 + L2 LINE L2 2287 2350 -964 202 236 36 0 chrX 154165104 154165159 -22808981 + L2 LINE L2 3185 3241 -72 250 304 22 52 chrX 154168272 154168407 -22805733 + MIR3 SINE MIR 52 182 -26 324 0 0 0 chrX 154169389 154169425 -22804715 + (TG)n Simple_repeat Simple_repeat 2 37 0 183 80 0 0 chrX 154169559 154169584 -22804556 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 238 344 19 25 chrX 154174565 154174725 -22799415 - L2 LINE L2 -1419 1895 1737 461 185 0 11 chrX 154175749 154175841 -22798299 + MLT1A2 LTR MaLR 284 374 0 902 239 156 9 chrX 154175920 154176246 -22797894 + MER77 LTR ERV1 79 452 -153 2116 139 3 0 chrX 154176988 154177298 -22796842 + AluJb SINE Alu 1 311 -1 1541 235 47 14 chrX 154177305 154177667 -22796473 + MLT1A2 LTR MaLR 1 374 0 440 244 25 50 chrX 154177739 154177899 -22796241 - L1M4 LINE L1 -3154 2992 2837 1356 243 39 10 chrX 154178678 154179071 -22795069 + MER74A LTR ERVL 73 558 0 1012 178 71 25 chrX 154181112 154181393 -22792747 + L1MB5 LINE L1 5881 6174 0 1890 234 24 20 chrX 154181520 154182021 -22792119 + L1MB7 LINE L1 5666 6168 -16 290 299 22 80 chrX 154183717 154183854 -22790286 + MIR3 SINE MIR 5 133 -75 925 161 97 0 chrX 154184510 154184696 -22789444 - MER47A DNA MER2_type -130 236 33 640 267 69 28 chrX 154187453 154187741 -22786399 + MLT1C LTR MaLR 119 418 -49 232 330 75 0 chrX 154188129 154188223 -22785917 - MIR SINE MIR -59 203 103 841 177 0 14 chrX 154188661 154188808 -22785332 - L1MB8 LINE L1 -2 6176 6032 1978 215 48 38 chrX 154188822 154189530 -22784610 + L1MB5 LINE L1 5114 5829 -351 1123 182 5 0 chrX 154189531 154189734 -22784406 + AluJo SINE Alu 1 204 -108 1121 208 118 0 chrX 154189752 154190065 -22784075 + L1MB5 LINE L1 5811 6160 -14 223 196 0 39 chrX 154190634 154190685 -22783455 + C-rich Low_complexity Low_complexity 4 52 0 221 203 72 0 chrX 154191194 154191263 -22782877 + (CACCC)n Simple_repeat Simple_repeat 4 77 0 193 211 123 0 chrX 154193632 154193689 -22780451 + L2 LINE L2 3155 3218 -54 196 209 93 0 chrX 154193949 154193992 -22780148 + MIR SINE MIR 90 136 -72 1689 123 0 0 chrX 154194810 154195037 -22779103 - AluSx SINE Alu -85 227 1 221 241 13 51 chrX 154195845 154195924 -22778216 + L2 LINE L2 2986 3061 -211 180 0 0 0 chrX 154203650 154203670 -22770470 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 218 133 0 22 chrX 154204931 154204976 -22769164 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 241 227 41 82 chrX 154205768 154205865 -22768275 - L2 LINE L2 -6 3266 3174 200 376 28 52 chrX 154207018 154207231 -22766909 + L2 LINE L2 2963 3170 -102 254 326 33 0 chrX 154208243 154208335 -22765805 - MIR SINE MIR -59 203 109 484 341 30 26 chrX 154210256 154210722 -22763418 + L1MC2 LINE L1 5547 6014 -330 * 2288 222 27 11 chrX 154210309 154210872 -22763268 + L1MB3 LINE L1 5604 6175 -8 1019 278 31 59 chrX 154211387 154211836 -22762304 + MLT1J LTR MaLR 1 480 -31 358 264 32 56 chrX 154212104 154212229 -22761911 - MIR SINE MIR -139 123 2 192 289 0 0 chrX 154212354 154212399 -22761741 + MIR SINE MIR 99 143 -119 1093 211 18 9 chrX 154215898 154216116 -22758024 + MER58A DNA MER1_type 4 223 -1 273 29 0 0 chrX 154216163 154216197 -22757943 + (CA)n Simple_repeat Simple_repeat 2 35 0 2183 80 7 0 chrX 154216445 154216733 -22757407 + AluSx SINE Alu 19 308 -4 343 302 163 14 chrX 154216735 154216954 -22757186 + L1ME LINE L1 5329 5586 -656 314 298 61 26 chrX 154217012 154217126 -22757014 + L1ME LINE L1 5716 5833 -288 209 292 0 0 chrX 154217129 154217177 -22756963 + L2 LINE L2 3225 3272 0 268 143 0 0 chrX 154217898 154217940 -22756200 + MER3 DNA MER1_type 47 88 -121 260 241 0 81 chrX 154218092 154218179 -22755961 + L2 LINE L2 3200 3279 -34 575 244 0 0 chrX 154218530 154218665 -22755475 + MER3 DNA MER1_type 1 135 -74 191 256 0 47 chrX 154218947 154219025 -22755115 + MIR SINE MIR 45 119 -89 737 242 60 48 chrX 154219656 154219904 -22754236 + MIR SINE MIR 12 262 0 210 273 0 52 chrX 154221130 154221207 -22752933 + MIR SINE MIR 93 165 -97 37 23 0 0 chrX 154222487 154222531 -22751609 + GC_rich Low_complexity Low_complexity 1 44 0 226 121 17 52 chrX 154222785 154222843 -22751297 + GA-rich Low_complexity Low_complexity 2 57 0 191 250 18 36 chrX 154223681 154223737 -22750403 - L2 LINE L2 -33 3280 3226 194 286 0 18 chrX 154223825 154223881 -22750259 - L2 LINE L2 -254 3059 3005 522 316 0 0 chrX 154223983 154224157 -22749983 + (CA)n Simple_repeat Simple_repeat 1 174 0 231 203 0 0 chrX 154224299 154224368 -22749772 + (CA)n Simple_repeat Simple_repeat 1 69 0 187 298 18 0 chrX 154224631 154224688 -22749452 - MIR SINE MIR -96 166 109 217 259 108 36 chrX 154225602 154225741 -22748399 + MIR3 SINE MIR 11 159 -49 528 213 52 0 chrX 154226339 154226475 -22747665 + MLT1D LTR MaLR 4 146 -359 573 203 0 0 chrX 154226522 154226699 -22747441 + (CA)n Simple_repeat Simple_repeat 2 178 0 565 208 3 3 chrX 154226744 154227134 -22747006 + (CA)n Simple_repeat Simple_repeat 1 390 0 378 305 122 6 chrX 154227171 154227412 -22746728 + MLT1D LTR MaLR 208 488 0 461 194 6 0 chrX 154227544 154227709 -22746431 + (TG)n Simple_repeat Simple_repeat 1 166 0 560 181 0 11 chrX 154227755 154227937 -22746203 + (TG)n Simple_repeat Simple_repeat 1 180 0 383 253 7 0 chrX 154228579 154228733 -22745407 + (TG)n Simple_repeat Simple_repeat 2 156 0 1235 169 0 23 chrX 154229030 154229249 -22744891 - AluJb SINE Alu -98 214 1 459 0 0 0 chrX 154231314 154231365 -22742775 + (CA)n Simple_repeat Simple_repeat 2 52 0 188 163 23 0 chrX 154231365 154231408 -22742732 + GA-rich Low_complexity Low_complexity 1 44 0 189 182 0 0 chrX 154236907 154236940 -22737200 + MIR SINE MIR 117 149 -113 186 43 0 0 chrX 154237945 154237968 -22736172 + (GGA)n Simple_repeat Simple_repeat 3 25 0 264 321 60 29 chrX 154238863 154239023 -22735117 - MIR3 SINE MIR -62 146 9 559 225 12 0 chrX 154239182 154239351 -22734789 + (CA)n Simple_repeat Simple_repeat 2 172 0 510 277 0 0 chrX 154239363 154239658 -22734482 + (CA)n Simple_repeat Simple_repeat 1 295 0 301 384 0 0 chrX 154239660 154239746 -22734394 - L1MC4 LINE L1 -1340 6702 6617 316 345 23 0 chrX 154239747 154239834 -22734306 - L1MC4 LINE L1 -1339 6703 6615 305 324 0 0 chrX 154239774 154239845 -22734295 + L1MD3 LINE L1 6602 6672 -1323 * 324 264 50 58 chrX 154241292 154241413 -22732727 - MIR SINE MIR -66 142 23 240 296 12 0 chrX 154244999 154245080 -22729060 + GA-rich Low_complexity Low_complexity 5 86 0 307 269 14 35 chrX 154245428 154245573 -22728567 + G-rich Low_complexity Low_complexity 3 144 0 229 182 0 0 chrX 154245641 154245685 -22728455 + C-rich Low_complexity Low_complexity 1 44 0 982 246 54 29 chrX 154247098 154247411 -22726729 + L1MB8 LINE L1 5858 6178 0 180 125 0 0 chrX 154248073 154248105 -22726035 + (CCCCCT)n Simple_repeat Simple_repeat 2 33 0 183 220 60 20 chrX 154252806 154252856 -22721284 + MIR SINE MIR 96 147 -61 523 252 146 43 chrX 154256093 154256462 -22717678 + MLT1C LTR MaLR 51 457 -10 213 39 0 0 chrX 154258435 154258461 -22715679 + (CCCCAG)n Simple_repeat Simple_repeat 3 28 0 238 273 0 91 chrX 154263679 154263778 -22710362 + MIR SINE MIR 59 148 -114 195 323 48 0 chrX 154263820 154263882 -22710258 + MIR3 SINE MIR 142 206 -2 365 337 126 27 chrX 154264074 154264554 -22709586 - L2 LINE L2 -249 3064 2516 21 36 0 0 chrX 154265382 154265410 -22708730 + GC_rich Low_complexity Low_complexity 1 28 0 327 25 0 0 chrX 154265665 154265705 -22708435 + (CCCCCG)n Simple_repeat Simple_repeat 5 44 0 294 218 39 0 chrX 154266564 154266642 -22707498 + GA-rich Low_complexity Low_complexity 3 83 0 210 71 0 0 chrX 154266810 154266838 -22707302 + (CA)n Simple_repeat Simple_repeat 2 29 0 341 323 69 36 chrX 154267603 154267906 -22706234 - L3 LINE CR1 -3 1574 1262 236 95 79 16 chrX 154267941 154268004 -22706136 + (TGGG)n Simple_repeat Simple_repeat 1 67 0 183 204 0 0 chrX 154268413 154268457 -22705683 + A-rich Low_complexity Low_complexity 1 44 0 668 289 21 21 chrX 154269046 154269240 -22704900 - MIR SINE MIR -1 261 68 298 274 43 0 chrX 154269519 154269636 -22704504 + C-rich Low_complexity Low_complexity 4 125 0 188 65 0 32 chrX 154270535 154270566 -22703574 + (TCTCCC)n Simple_repeat Simple_repeat 5 34 0 2096 112 3 19 chrX 154270781 154271095 -22703045 + AluSx SINE Alu 1 309 -3 287 377 27 0 chrX 154271552 154271698 -22702442 - MIR3 SINE MIR -21 187 38 303 321 65 34 chrX 154272856 154273118 -22701022 - L2 LINE L2 -414 2900 2631 1505 111 53 4 chrX 154273420 154273645 -22700495 - MER46A DNA MER2_type 0 236 1 198 0 0 0 chrX 154275070 154275092 -22699048 + (T)n Simple_repeat Simple_repeat 1 22 0 289 289 0 0 chrX 154275186 154275262 -22698878 - L1MB5 LINE L1 -7 6167 6092 202 278 18 124 chrX 154276109 154276278 -22697862 + MIR SINE MIR 31 181 -81 471 284 211 24 chrX 154276343 154277050 -22697090 - L2 LINE L2 -4 3268 2415 305 257 149 14 chrX 154277502 154277650 -22696490 - MIR3 SINE MIR -36 172 5 349 310 35 44 chrX 154278212 154278325 -22695815 - L1ME LINE L1 -394 5768 5657 809 142 84 7 chrX 154278326 154278481 -22695659 - MER4E LTR ERV1 -29 750 584 1719 202 3 5 chrX 154278492 154278859 -22695281 - L1M3 LINE L1 -513 5667 5302 186 71 0 0 chrX 154278869 154278897 -22695243 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 944 184 26 26 chrX 154278904 154279094 -22695046 - L1MC1 LINE L1 -6 6327 6138 351 264 64 132 chrX 154279102 154279352 -22694788 - L1MDb LINE L1 -5400 1009 777 23 0 0 0 chrX 154279829 154279852 -22694288 + AT_rich Low_complexity Low_complexity 1 23 0 887 181 7 0 chrX 154279852 154280007 -22694133 - L1MB3 LINE L1 -7 6176 6021 1188 207 107 10 chrX 154280021 154280321 -22693819 - L1MB5 LINE L1 -45 6129 5801 1347 171 0 5 chrX 154280454 154280670 -22693470 - AluJo SINE Alu -97 215 1 244 221 15 29 chrX 154280695 154280763 -22693377 + L1MC4a LINE L1 6607 6673 -1135 316 301 19 77 chrX 154280775 154280931 -22693209 + L1MC5 LINE L1 6815 6961 -1000 2326 206 22 7 chrX 154280949 154281346 -22692794 + L1ME1 LINE L1 5096 5528 -638 1988 138 3 3 chrX 154281346 154281644 -22692496 + AluJo SINE Alu 1 298 -14 2326 206 22 7 chrX 154281644 154281993 -22692147 + L1ME1 LINE L1 5528 5870 -296 336 24 0 0 chrX 154285848 154285889 -22688251 + (TCCC)n Simple_repeat Simple_repeat 1 41 0 1703 155 34 3 chrX 154286288 154286579 -22687561 + AluJb SINE Alu 1 300 -12 503 238 23 86 chrX 154286601 154286857 -22687283 - L1M4 LINE L1 -1137 5507 5268 1923 155 76 29 chrX 154286937 154287382 -22686758 - L1MB7 LINE L1 0 6184 5719 2031 104 38 3 chrX 154287411 154287700 -22686440 - AluSx SINE Alu -13 299 1 225 260 110 0 chrX 154287714 154287814 -22686326 - L1M4 LINE L1 -4171 2475 2365 411 304 81 12 chrX 154287832 154287993 -22686147 - L1M4 LINE L1 -4119 2527 2356 1450 227 73 16 chrX 154288016 154288790 -22685350 - L1M4 LINE L1 -4536 2110 443 298 73 0 0 chrX 154289182 154289223 -22684917 + U2 snRNA snRNA 12 52 -136 236 29 0 29 chrX 154291806 154291840 -22682300 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 5284 42 16 2 chrX 154291852 154292492 -22681648 - L1PA5 LINE L1 -8 6146 5498 234 337 93 26 chrX 154296623 154296895 -22677245 - L2 LINE L2 -281 2991 2703 1000 178 272 6 chrX 154296926 154297257 -22676883 - MSTA LTR MaLR -9 419 1 1657 184 7 13 chrX 154297655 154297960 -22676180 + AluJo SINE Alu 1 303 -9 258 254 0 30 chrX 154298294 154298361 -22675779 + MER63C DNA MER1_type 1 65 -865 2038 236 124 21 chrX 154298474 154299174 -22674966 + MER63C DNA MER1_type 114 885 -45 1457 241 15 26 chrX 154299175 154299622 -22674518 + L1ME1 LINE L1 5453 5839 -327 299 274 4 4 chrX 154300072 154300344 -22673796 + (CA)n Simple_repeat Simple_repeat 1 272 0 762 190 15 6 chrX 154300462 154300772 -22673368 - MLT1A1 LTR MaLR 0 365 19 290 244 30 30 chrX 154300793 154300924 -22673216 + (CA)n Simple_repeat Simple_repeat 1 131 0 2292 109 0 0 chrX 154302094 154302396 -22671744 - AluSp SINE Alu -11 302 1 447 354 52 19 chrX 154302517 154302707 -22671433 - L1M4 LINE L1 -3111 3035 2832 1811 159 13 0 chrX 154302707 154303009 -22671131 - AluJb SINE Alu -6 306 1 447 354 52 19 chrX 154303009 154303089 -22671051 - L1M4 LINE L1 -3314 2832 2756 1974 173 32 47 chrX 154303111 154303579 -22670561 - MLT1C LTR MaLR -6 461 1 379 333 55 41 chrX 154303581 154303872 -22670268 - L1M4 LINE L1 -3409 2737 2437 232 268 0 24 chrX 154303876 154303958 -22670182 + (CATATA)n Simple_repeat Simple_repeat 4 83 0 1061 135 0 6 chrX 154303961 154304117 -22670023 + AluSq SINE Alu 1 155 -158 183 42 0 0 chrX 154304225 154304249 -22669891 + (TG)n Simple_repeat Simple_repeat 2 25 0 1472 165 125 9 chrX 154304249 154304577 -22669563 - MLT2D LTR ERVL -48 366 1 1562 213 78 50 chrX 154304810 154304887 -22669253 - LTR38 LTR ERV1 0 556 483 2047 136 7 0 chrX 154304887 154305189 -22668951 - AluSx SINE Alu -8 304 1 1562 213 78 50 chrX 154305189 154305627 -22668513 - LTR38 LTR ERV1 -73 483 27 1036 54 0 0 chrX 154305627 154305757 -22668383 - AluY SINE Alu -12 299 170 230 111 0 0 chrX 154305757 154305793 -22668347 - LTR38B LTR ERV1 -574 36 1 354 231 77 19 chrX 154306579 154306794 -22667346 - MER67C LTR ERV1 -277 433 146 293 308 28 0 chrX 154306993 154307100 -22667040 + MIR SINE MIR 42 151 -111 653 245 110 49 chrX 154307334 154307709 -22666431 + MLT1D LTR MaLR 1 362 -28 749 109 0 8 chrX 154307709 154307828 -22666312 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 2278 95 7 0 chrX 154307845 154308141 -22665999 - AluSx SINE Alu -14 298 1 277 309 79 16 chrX 154308517 154308643 -22665497 + MIR3 SINE MIR 7 140 -68 1502 199 51 14 chrX 154308752 154309108 -22665032 - MLT1C LTR MaLR -98 369 1 559 277 120 51 chrX 154309223 154309598 -22664542 + MLT1J LTR MaLR 111 511 0 180 0 0 0 chrX 154309835 154309855 -22664285 + (ATTTG)n Simple_repeat Simple_repeat 5 24 0 331 203 16 0 chrX 154309857 154309921 -22664219 - MLT1A2 LTR MaLR -70 304 240 1202 146 0 85 chrX 154309967 154310028 -22664112 + AluJo SINE Alu 87 152 -160 2085 110 7 0 chrX 154310028 154310319 -22663821 + AluSx SINE Alu 1 293 -19 1202 146 0 85 chrX 154310319 154310504 -22663636 + AluJo SINE Alu 152 312 0 2110 106 7 27 chrX 154310564 154310900 -22663240 + AluSc SINE Alu 1 330 0 2118 138 0 0 chrX 154310904 154311216 -22662924 + AluSx SINE Alu 1 312 0 1490 220 11 16 chrX 154311501 154311873 -22662267 + L1ME1 LINE L1 4425 4794 -1352 1694 178 21 35 chrX 154311873 154312184 -22661956 - MLT1A2 LTR MaLR 0 374 67 2524 108 17 8 chrX 154312184 154312545 -22661595 + THE1B LTR MaLR 1 364 0 1694 178 21 35 chrX 154312545 154312610 -22661530 - MLT1A2 LTR MaLR -307 67 3 3598 198 37 34 chrX 154312629 154313317 -22660823 + L1ME1 LINE L1 4813 5507 -659 2845 130 26 0 chrX 154313317 154313732 -22660408 - MSTA LTR MaLR 0 428 3 3598 198 37 34 chrX 154313732 154314389 -22659751 + L1ME1 LINE L1 5507 6160 -6 360 0 0 0 chrX 154316967 154317007 -22657133 + (TG)n Simple_repeat Simple_repeat 2 41 0 1354 219 145 19 chrX 154322264 154322679 -22651461 - MLT1C LTR MaLR 0 467 1 246 213 0 16 chrX 154323217 154323278 -22650862 + HAL1b LINE L1 395 454 -894 2214 149 70 34 chrX 154323281 154323698 -22650442 + MSTB1 LTR MaLR 1 432 0 307 321 74 44 chrX 154324259 154324689 -22649451 + L1MC4 LINE L1 7492 7934 -108 3141 163 25 53 chrX 154324713 154325091 -22649049 + L1MB5 LINE L1 5565 5952 -222 1629 208 73 62 chrX 154325091 154325544 -22648596 + MER74C LTR ERVL 3 460 0 3141 163 25 53 chrX 154325544 154325752 -22648388 + L1MB5 LINE L1 5952 6135 -39 2039 121 0 3 chrX 154325752 154326041 -22648099 + AluJb SINE Alu 1 288 -24 3141 163 25 53 chrX 154326041 154326080 -22648060 + L1MB5 LINE L1 6135 6174 0 554 276 176 9 chrX 154327539 154328024 -22646116 + L2 LINE L2 2689 3257 -56 27 29 0 0 chrX 154328912 154328946 -22645194 + GC_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chrX 154329004 154329028 -22645112 + GC_rich Low_complexity Low_complexity 1 24 0 410 247 101 34 chrX 154330020 154330411 -22643729 + MLT1D LTR MaLR 1 452 -15 1818 161 0 7 chrX 154332729 154333021 -22641119 + AluJo SINE Alu 1 290 -22 517 308 131 76 chrX 154333292 154333955 -22640185 + L2 LINE L2 2285 2979 -334 385 188 0 0 chrX 154333977 154334046 -22640094 + LTR67 LTR ERVL 113 181 -376 181 336 74 34 chrX 154334173 154334322 -22639818 + L2 LINE L2 1971 2125 -1189 831 176 131 11 chrX 154334502 154334758 -22639382 - MLT1F LTR MaLR -1 566 186 325 283 26 33 chrX 154334763 154334915 -22639225 + GA-rich Low_complexity Low_complexity 1 151 0 440 200 11 11 chrX 154334990 154335085 -22639055 - MLT1F LTR MaLR -466 101 7 294 239 0 0 chrX 154335217 154335284 -22638856 - MLT1F LTR MaLR -104 438 372 651 249 17 11 chrX 154335343 154335524 -22638616 + L1ME LINE L1 6 187 -5883 439 300 69 47 chrX 154335572 154335805 -22638335 + L1ME LINE L1 279 516 -5554 240 35 0 0 chrX 154335874 154335903 -22638237 + (CCA)n Simple_repeat Simple_repeat 3 31 0 356 246 62 101 chrX 154335906 154336085 -22638055 + L1ME LINE L1 544 715 -5355 21 0 0 0 chrX 154336096 154336117 -22638023 + AT_rich Low_complexity Low_complexity 1 21 0 1868 139 11 7 chrX 154336141 154336422 -22637718 + AluJb SINE Alu 21 302 -10 1965 156 0 3 chrX 154336445 154336740 -22637400 - AluJb SINE Alu -18 294 1 379 171 24 0 chrX 154336828 154336910 -22637230 - Tigger5 DNA MER2_type -1 2322 2239 347 164 14 14 chrX 154336923 154336996 -22637144 - Tigger5 DNA MER2_type 0 2323 2251 271 211 0 0 chrX 154336965 154337017 -22637123 - Tigger5 DNA MER2_type -2268 55 4 * 1717 278 79 21 chrX 154337036 154338113 -22636027 + L1ME LINE L1 878 2016 -4245 611 244 19 38 chrX 154338088 154338297 -22635843 + L1ME LINE L1 2335 2539 -3541 * 2160 45 41 0 chrX 154338298 154338566 -22635574 + AluSc SINE Alu 21 299 -10 347 43 0 57 chrX 154338600 154338670 -22635470 + (CAAAA)n Simple_repeat Simple_repeat 2 67 0 447 289 35 40 chrX 154340246 154340753 -22633387 + L1ME LINE L1 2610 3118 -2962 1896 150 0 7 chrX 154340753 154341065 -22633075 + AluJb SINE Alu 1 310 0 266 0 29 0 chrX 154341064 154341098 -22633042 + (CA)n Simple_repeat Simple_repeat 2 36 0 447 289 35 40 chrX 154341065 154341332 -22632808 + L1ME LINE L1 3118 3423 -2657 372 307 0 6 chrX 154341924 154342186 -22631954 + GA-rich Low_complexity Low_complexity 1 260 0 1398 155 0 33 chrX 154545137 154545362 -22428778 + AluSg/x SINE Alu 73 291 -19 2250 90 30 0 chrX 154545362 154545662 -22428478 + AluSc SINE Alu 1 309 0 1398 155 0 33 chrX 154545662 154545681 -22428459 + AluSg/x SINE Alu 291 309 -1 375 202 16 147 chrX 154545704 154545777 -22428363 + L1MC5 LINE L1 7813 7863 -98 2194 107 0 7 chrX 154545777 154546085 -22428055 + AluSx SINE Alu 1 306 -6 375 202 16 147 chrX 154546085 154546140 -22428000 + L1MC5 LINE L1 7863 7924 -37 1055 282 35 0 chrX 154546149 154546461 -22427679 + L2 LINE L2 2594 2916 -398 23 0 0 0 chrX 154547744 154547767 -22426373 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 154547858 154547879 -22426261 + GC_rich Low_complexity Low_complexity 1 21 0 208 307 11 37 chrX 154548014 154548128 -22426012 - MIR SINE MIR -84 124 10 2369 79 0 3 chrX 154548786 154549090 -22425050 - AluSx SINE Alu -9 303 1 183 256 0 0 chrX 154549667 154549706 -22424434 + MIR SINE MIR 62 100 -108 2092 112 0 32 chrX 154550048 154550183 -22423957 + AluSx SINE Alu 1 139 -173 2234 79 0 0 chrX 154550183 154550481 -22423659 + AluSc SINE Alu 1 298 0 2200 90 20 0 chrX 154550482 154550782 -22423358 + AluY SINE Alu 1 306 -5 2092 112 0 32 chrX 154550782 154550956 -22423184 + AluSx SINE Alu 138 303 -9 203 338 15 0 chrX 154551172 154551240 -22422900 + MIR SINE MIR 76 144 -64 208 301 24 12 chrX 154551889 154551972 -22422168 - L2 LINE L2 -356 2958 2875 260 303 0 0 chrX 154552331 154552407 -22421733 + MIR3 SINE MIR 104 179 -29 185 298 0 0 chrX 154552899 154552956 -22421184 + MIR SINE MIR 68 124 -84 195 129 0 0 chrX 154553164 154553195 -22420945 + (CAGCT)n Simple_repeat Simple_repeat 1 31 0 2071 112 17 0 chrX 154553986 154554154 -22419986 - AluSx SINE Alu -9 303 126 2219 103 3 3 chrX 154554154 154554454 -22419686 - AluSc SINE Alu -9 300 1 2071 112 17 0 chrX 154554454 154554581 -22419559 - AluSx SINE Alu -186 126 3 406 278 10 56 chrX 154554589 154554622 -22419518 - L1ME3A LINE L1 0 6170 6137 2198 98 0 0 chrX 154554622 154554917 -22419223 + AluSg SINE Alu 1 295 -15 406 278 10 56 chrX 154554917 154555081 -22419059 - L1ME3A LINE L1 -33 6137 5982 389 258 129 23 chrX 154555157 154555289 -22418851 - L1ME2 LINE L1 -79 6087 5942 687 221 101 14 chrX 154555315 154555523 -22418617 - L1ME2 LINE L1 -350 5814 5589 1952 125 22 26 chrX 154555684 154555997 -22418143 - AluSx SINE Alu 0 312 1 417 293 31 117 chrX 154556002 154556318 -22417822 - L1ME2 LINE L1 -2127 4019 3772 349 165 200 43 chrX 154556318 154556359 -22417781 - FLAM_C SINE Alu -169 133 100 2034 119 3 3 chrX 154556359 154556652 -22417488 + AluJb SINE Alu 12 304 -8 349 165 200 43 chrX 154556652 154556725 -22417415 - FLAM_C SINE Alu -202 100 1 417 293 31 117 chrX 154556725 154556979 -22417161 - L1ME2 LINE L1 -2374 3772 3498 2166 95 10 0 chrX 154557013 154557307 -22416833 - AluSp SINE Alu -16 297 1 2237 101 0 3 chrX 154557313 154557619 -22416521 - AluY SINE Alu -6 305 1 264 286 84 31 chrX 154557637 154557785 -22416355 - L1ME2 LINE L1 -2897 3249 3083 2154 128 16 0 chrX 154557785 154558090 -22416050 - AluSq SINE Alu -3 310 1 264 286 84 31 chrX 154558090 154558168 -22415972 - L1ME2 LINE L1 -3063 3083 3011 352 293 66 36 chrX 154561190 154561357 -22412783 + MIR3 SINE MIR 5 176 -32 243 219 68 0 chrX 154563655 154563728 -22410412 - MLT1C LTR MaLR -29 438 361 226 125 31 94 chrX 154563854 154563918 -22410222 - MLT1C LTR MaLR -341 126 67 1427 144 0 14 chrX 154564626 154564848 -22409292 + AluSq SINE Alu 1 219 -94 252 0 0 0 chrX 154565261 154565289 -22408851 + (T)n Simple_repeat Simple_repeat 1 28 0 2235 109 3 0 chrX 154565450 154565761 -22408379 - AluSx SINE Alu 0 312 1 2034 120 27 0 chrX 154565776 154566077 -22408063 - AluSg SINE Alu -1 309 1 2193 104 0 25 chrX 154566100 154566417 -22407723 - AluSc SINE Alu 0 309 1 1256 164 164 0 chrX 154567251 154567495 -22406645 + AluJb SINE Alu 1 284 -28 192 40 0 0 chrX 154567495 154567520 -22406620 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 297 51 0 0 chrX 154567519 154567558 -22406582 + (CA)n Simple_repeat Simple_repeat 2 40 0 607 333 189 40 chrX 154567806 154568142 -22405998 + L1MEd LINE L1 504 789 -5330 1834 155 3 7 chrX 154568142 154568438 -22405702 + AluJb SINE Alu 1 295 -17 607 333 189 40 chrX 154568438 154568693 -22405447 + L1MEd LINE L1 789 1183 -4936 2109 103 10 0 chrX 154568719 154569011 -22405129 + AluSx SINE Alu 1 295 -17 331 224 0 0 chrX 154569189 154569256 -22404884 + MER58A DNA MER1_type 49 115 0 750 98 65 0 chrX 154569268 154569391 -22404749 + MER2 DNA MER2_type 2 132 -213 2121 102 20 0 chrX 154569391 154569685 -22404455 - AluSg SINE Alu -10 300 1 637 144 0 27 chrX 154569697 154569808 -22404332 - FLAM_C SINE Alu -2 141 34 414 143 0 82 chrX 154569820 154569918 -22404222 + MER2 DNA MER2_type 120 209 -136 1923 148 7 7 chrX 154569920 154570225 -22403915 - AluSx SINE Alu -3 309 5 308 237 0 0 chrX 154570292 154570368 -22403772 + L1MEd LINE L1 2846 2921 -3208 2285 87 3 0 chrX 154570482 154570781 -22403359 + AluSq SINE Alu 1 300 -13 1756 79 0 9 chrX 154570951 154571180 -22402960 + AluSq SINE Alu 1 227 -86 2210 83 159 2 chrX 154571180 154571576 -22402564 - MER75 DNA T2_type -45 469 12 1686 97 7 75 chrX 154571838 154572116 -22402024 - AluSq SINE Alu -12 301 43 3758 191 28 78 chrX 154572120 154573140 -22401000 - LTR5 LTR ERVK 0 969 1 411 59 0 0 chrX 154573140 154573191 -22400949 - AluSq SINE Alu -261 51 1 2221 89 0 0 chrX 154573191 154573509 -22400631 - AluSx SINE Alu 0 318 1 2024 136 0 0 chrX 154573513 154573807 -22400333 - AluJo SINE Alu -18 294 1 2164 116 0 3 chrX 154573890 154574191 -22399949 + AluSx SINE Alu 1 300 -12 722 176 0 16 chrX 154574311 154574326 -22399814 - FLAM_C SINE Alu -185 127 113 252 0 0 0 chrX 154574326 154574354 -22399786 + (TA)n Simple_repeat Simple_repeat 2 29 0 722 176 0 16 chrX 154574354 154574463 -22399677 - FLAM_C SINE Alu -199 113 5 2174 113 3 6 chrX 154574808 154575119 -22399021 + AluSx SINE Alu 3 312 0 2074 128 3 0 chrX 154575199 154575496 -22398644 + AluSg SINE Alu 1 298 -12 550 193 8 0 chrX 154575513 154575632 -22398508 + L1MB4 LINE L1 6061 6180 0 22 0 0 0 chrX 154577909 154577931 -22396209 + GC_rich Low_complexity Low_complexity 1 22 0 241 327 0 12 chrX 154578549 154578653 -22395487 + MIR SINE MIR 63 146 -62 928 322 91 51 chrX 154578810 154579066 -22395074 - L2 LINE L2 -903 2411 2167 1788 67 118 26 chrX 154579066 154579336 -22394804 + AluSx SINE Alu 1 295 -17 2297 69 0 44 chrX 154579337 154579482 -22394658 + AluSx SINE Alu 1 151 -161 2375 58 0 3 chrX 154579482 154579775 -22394365 + AluY SINE Alu 1 292 -19 2297 69 0 44 chrX 154579775 154579947 -22394193 + AluSx SINE Alu 151 304 -8 928 322 91 51 chrX 154579947 154580517 -22393623 - L2 LINE L2 -1147 2167 1537 2009 108 4 0 chrX 154580517 154580836 -22393304 - AluSg SINE Alu 0 320 1 928 322 91 51 chrX 154580836 154580952 -22393188 - L2 LINE L2 -1777 1537 1427 1847 124 19 42 chrX 154581729 154581892 -22392248 - AluJb SINE Alu -12 300 146 297 0 0 0 chrX 154581892 154581925 -22392215 + (TTC)n Simple_repeat Simple_repeat 2 34 0 1847 124 19 42 chrX 154581925 154582068 -22392072 - AluJb SINE Alu -166 146 1 3637 206 56 20 chrX 154582487 154583231 -22390909 - MLT1C-int LTR MaLR -219 1152 373 2161 106 7 0 chrX 154583231 154583524 -22390616 - AluSx SINE Alu -15 297 3 3637 206 56 20 chrX 154583524 154583620 -22390520 - MLT1C-int LTR MaLR -998 373 282 1008 182 0 6 chrX 154583621 154583797 -22390343 - AluJo/FRAM SINE Alu -5 307 133 1682 134 90 17 chrX 154583798 154584088 -22390052 - AluJo SINE Alu -1 311 1 1403 144 39 18 chrX 154584088 154584285 -22389855 - MLT1C-int LTR MaLR -1080 291 85 1683 169 136 17 chrX 154584285 154584639 -22389501 + MSTD LTR MaLR 1 396 0 1403 144 39 18 chrX 154584639 154584726 -22389414 - MLT1C-int LTR MaLR -1286 85 1 1583 229 121 9 chrX 154584726 154585146 -22388994 - MLT1C LTR MaLR 0 467 1 445 200 47 0 chrX 154588806 154588891 -22385249 - L1MC1 LINE L1 0 6333 6245 295 174 70 23 chrX 154588936 154589022 -22385118 - L1MC1 LINE L1 -196 6137 6048 342 250 0 25 chrX 154589084 154589164 -22384976 - MER2 DNA MER2_type 0 345 268 2442 44 0 7 chrX 154589207 154589503 -22384637 + AluY SINE Alu 1 294 -17 1290 102 0 0 chrX 154589503 154589670 -22384470 + AluSq SINE Alu 134 300 -13 1589 155 32 4 chrX 154589683 154589961 -22384179 + AluJo SINE Alu 6 291 -21 385 209 0 0 chrX 154589968 154590054 -22384086 - MER2 DNA MER2_type -137 208 123 1019 157 6 6 chrX 154590054 154590220 -22383920 + AluJb SINE Alu 138 303 -9 2170 105 10 0 chrX 154590223 154590518 -22383622 + AluSx SINE Alu 1 298 -14 2220 70 0 58 chrX 154590519 154590832 -22383308 + AluY SINE Alu 1 295 -16 438 243 0 27 chrX 154590846 154590957 -22383183 - MER2 DNA MER2_type -237 108 1 208 310 26 69 chrX 154591097 154591213 -22382927 - MIR SINE MIR -80 182 72 195 300 0 33 chrX 154591361 154591421 -22382719 - L2 LINE L2 -2 3270 3213 275 259 168 60 chrX 154591612 154591797 -22382343 - MLT1K LTR MaLR -6 582 378 1400 108 221 85 chrX 154591820 154591950 -22382190 + MER65A LTR ERV1 3 114 -331 2215 88 11 0 chrX 154591950 154592235 -22381905 - AluSq SINE Alu -25 288 1 2235 113 0 0 chrX 154592238 154592540 -22381600 - AluSx SINE Alu -10 302 1 1400 108 221 85 chrX 154592540 154592795 -22381345 + MER65A LTR ERV1 115 445 0 1348 133 9 27 chrX 154592821 154593046 -22381094 + AluJo SINE Alu 1 221 -91 321 135 0 0 chrX 154593053 154593105 -22381035 + (A)n Simple_repeat Simple_repeat 1 52 0 841 157 0 15 chrX 154593146 154593280 -22380860 + FLAM_C SINE Alu 1 132 -1 26 0 0 0 chrX 154593280 154593306 -22380834 + AT_rich Low_complexity Low_complexity 1 26 0 1745 106 127 4 chrX 154593388 154593663 -22380477 - AluSc SINE Alu 0 309 1 1971 139 33 0 chrX 154593663 154593965 -22380175 - AluJb SINE Alu 0 312 1 1161 183 9 13 chrX 154594007 154594231 -22379909 + AluJb SINE Alu 86 308 -4 3362 157 71 42 chrX 154594262 154595098 -22379042 + MER65A-int LTR ERV1 983 1842 -3029 541 174 11 11 chrX 154595149 154595241 -22378899 + AluJo SINE Alu 5 96 -216 1132 58 0 0 chrX 154595241 154595378 -22378762 + AluSg SINE Alu 1 137 -173 1166 141 57 25 chrX 154595424 154595783 -22378357 + AluJo SINE Alu 82 287 -25 976 53 0 112 chrX 154595786 154595938 -22378202 - AluY SINE Alu -139 172 38 4031 116 69 10 chrX 154595938 154596260 -22377880 + MER65A-int LTR ERV1 3612 3914 -957 2085 90 7 23 chrX 154596260 154596560 -22377580 + AluSx SINE Alu 1 295 -17 4031 116 69 10 chrX 154596560 154597328 -22376812 + MER65A-int LTR ERV1 3914 4871 0 288 111 0 0 chrX 154597328 154597373 -22376767 + MER65A LTR ERV1 1 45 -400 2214 121 0 0 chrX 154597377 154597682 -22376458 + AluSx SINE Alu 4 308 -4 1289 193 37 0 chrX 154597686 154597904 -22376236 + 7SLRNA srpRNA srpRNA 1 226 -94 815 146 7 15 chrX 154597905 154598042 -22376098 + AluJo SINE Alu 1 136 -176 1833 175 10 3 chrX 154598042 154598356 -22375784 + 7SLRNA srpRNA srpRNA 1 316 -4 1547 141 32 136 chrX 154598362 154598657 -22375483 + MER65A LTR ERV1 52 376 -69 2203 84 3 0 chrX 154598657 154598989 -22375151 + AluSq SINE Alu 1 333 0 1547 141 32 136 chrX 154598989 154599005 -22375135 + MER65A LTR ERV1 376 392 -53 1698 181 0 13 chrX 154599005 154599303 -22374837 + AluJb SINE Alu 9 302 -10 1547 141 32 136 chrX 154599303 154599429 -22374711 + MER65A LTR ERV1 392 445 0 459 287 102 6 chrX 154599516 154599673 -22374467 - MLT1K LTR MaLR -412 176 5 21 0 0 0 chrX 154599736 154599757 -22374383 + AT_rich Low_complexity Low_complexity 1 21 0 802 161 0 0 chrX 154599760 154599884 -22374256 - FLAM_C SINE Alu -19 124 1 2406 98 0 0 chrX 154599910 154600217 -22373923 + AluSx SINE Alu 1 307 -5 1976 110 0 7 chrX 154600437 154600755 -22373385 - AluJb SINE Alu 0 320 5 2171 77 0 13 chrX 154601505 154601803 -22372337 - AluY SINE Alu -17 294 1 1061 142 6 0 chrX 154601817 154601979 -22372161 + FRAM SINE Alu 1 162 -14 28 61 0 0 chrX 154601980 154602029 -22372111 + AT_rich Low_complexity Low_complexity 1 49 0 2184 109 3 6 chrX 154602029 154602342 -22371798 + AluSx SINE Alu 1 312 0 2016 97 0 53 chrX 154602724 154603045 -22371095 + AluSg SINE Alu 2 305 -5 22 0 0 0 chrX 154603660 154603682 -22370458 + GC_rich Low_complexity Low_complexity 1 22 0 236 159 0 43 chrX 154607394 154607463 -22366677 + G-rich Low_complexity Low_complexity 3 68 0 35 54 0 0 chrX 154607480 154607536 -22366604 + GC_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chrX 154607636 154607666 -22366474 + GC_rich Low_complexity Low_complexity 1 30 0 190 250 26 53 chrX 154609433 154609509 -22364631 - MIR SINE MIR -117 91 18 243 236 214 39 chrX 154610167 154610345 -22363795 - MLT1K LTR MaLR -48 540 332 510 241 86 17 chrX 154611428 154611660 -22362480 + L2 LINE L2 2027 2274 -1040 196 212 212 12 chrX 154611713 154611798 -22362342 - L2 LINE L2 -21 3251 3150 605 241 41 109 chrX 154612038 154612238 -22361902 - L1MC4 LINE L1 -644 7398 7229 2135 121 0 10 chrX 154612238 154612536 -22361604 - AluSg SINE Alu -15 295 1 605 241 41 109 chrX 154612536 154612675 -22361465 - L1MC4 LINE L1 -813 7229 7082 871 212 6 0 chrX 154612691 154612861 -22361279 - AluJo/FRAM SINE Alu -8 304 134 2329 96 0 0 chrX 154612861 154613164 -22360976 - AluSq SINE Alu -10 303 1 496 267 87 19 chrX 154613165 154613371 -22360769 - L2 LINE L2 -593 2721 2502 2130 108 7 7 chrX 154613473 154613780 -22360360 - AluSx SINE Alu -3 309 3 409 312 91 0 chrX 154613800 154613954 -22360186 - L1ME4a LINE L1 0 6121 5954 1742 172 3 0 chrX 154613974 154614271 -22359869 - AluJb SINE Alu -14 298 1 856 149 0 0 chrX 154614285 154614419 -22359721 - AluJo SINE Alu -178 134 1 460 336 84 28 chrX 154616490 154616704 -22357436 - L1ME4a LINE L1 -47 6074 5849 1285 274 78 42 chrX 154616873 154617500 -22356640 - L1MEc LINE L1 -5691 705 56 2355 76 3 3 chrX 154617686 154617987 -22356153 - AluSp SINE Alu -12 301 1 1548 151 99 0 chrX 154617991 154618275 -22355865 - AluJo SINE Alu 0 312 1 310 226 316 0 chrX 154618412 154618567 -22355573 - HAL1 LINE L1 -589 1918 1715 2440 70 3 0 chrX 154618761 154619062 -22355078 + AluSp SINE Alu 1 302 -11 1570 156 52 39 chrX 154619075 154619382 -22354758 + AluJo SINE Alu 1 311 -1 2442 80 0 0 chrX 154619382 154619693 -22354447 + AluY SINE Alu 1 311 0 1607 181 7 0 chrX 154619711 154620012 -22354128 + AluJo SINE Alu 1 303 0 822 269 84 16 chrX 154620142 154620391 -22353749 - L2 LINE L2 -560 2754 2489 374 297 161 47 chrX 154621701 154622249 -22351891 + L2 LINE L2 1699 2308 -1006 434 232 62 11 chrX 154631011 154631140 -22343000 + L1MB7 LINE L1 6043 6175 -9 212 255 21 11 chrX 154635777 154635871 -22338269 + C-rich Low_complexity Low_complexity 4 98 0 24 77 0 0 chrX 154635925 154635977 -22338163 + GC_rich Low_complexity Low_complexity 1 52 0 37 76 0 0 chrX 154636096 154636175 -22337965 + GC_rich Low_complexity Low_complexity 1 79 0 1099 157 5 5 chrX 154636429 154636620 -22337520 - AluJb SINE Alu -1 311 121 622 115 0 0 chrX 154636620 154636724 -22337416 - L1M LINE L1 -757 5421 5318 1505 158 0 24 chrX 154636780 154637034 -22337106 - AluJo SINE Alu -37 275 28 2044 121 0 20 chrX 154637036 154637230 -22336910 + AluSx SINE Alu 2 189 -123 2504 56 0 3 chrX 154637230 154637536 -22336604 - AluY SINE Alu -6 305 1 2044 121 0 20 chrX 154637536 154637639 -22336501 + AluSx SINE Alu 189 293 -19 1371 173 3 51 chrX 154637677 154637809 -22336331 + MLT2C1 LTR ERVL 117 254 -143 2245 109 0 0 chrX 154637809 154638111 -22336029 + AluSq SINE Alu 1 302 -11 1371 173 3 51 chrX 154638111 154638273 -22335867 + MLT2C1 LTR ERVL 254 397 0 619 171 57 29 chrX 154638274 154638460 -22335680 - L1M4 LINE L1 -1632 4514 4320 1996 130 0 10 chrX 154638460 154638752 -22335388 + AluSq SINE Alu 1 289 -24 619 171 57 29 chrX 154638752 154638775 -22335365 - L1M4 LINE L1 -1826 4320 4299 1915 145 0 0 chrX 154638780 154639070 -22335070 - AluJb SINE Alu -22 290 1 912 127 8 0 chrX 154639070 154639204 -22334936 - AluJo SINE Alu -177 135 1 1490 270 108 12 chrX 154639265 154639842 -22334298 + L2 LINE L2 2173 2804 -510 2265 100 0 0 chrX 154640001 154640301 -22333839 - AluSx SINE Alu -12 300 1 676 120 0 0 chrX 154640328 154640428 -22333712 + FLAM_C SINE Alu 43 142 -1 325 267 44 44 chrX 154640431 154640521 -22333619 + L1MC4a LINE L1 5296 5385 -2423 2022 176 68 40 chrX 154640521 154641037 -22333103 + L1MB5 LINE L1 5652 6174 0 317 335 43 27 chrX 154641038 154641223 -22332917 + L1MC4a LINE L1 5405 5592 -2216 258 275 36 72 chrX 154641228 154641366 -22332774 + L1MC4a LINE L1 5799 5931 -1877 2405 90 0 0 chrX 154641576 154641887 -22332253 - AluSq SINE Alu -2 311 1 357 280 60 0 chrX 154641908 154642008 -22332132 + L2 LINE L2 2941 3046 -267 1779 121 0 115 chrX 154642171 154642509 -22331631 + AluJb SINE Alu 2 300 -2 388 176 33 0 chrX 154642512 154642603 -22331537 + GA-rich Low_complexity Low_complexity 3 96 0 690 245 83 0 chrX 154643271 154643487 -22330653 + L1MB5 LINE L1 5924 6157 -17 1870 154 6 3 chrX 154645788 154646099 -22328041 + AluJb SINE Alu 1 312 0 1201 148 74 0 chrX 154646312 154646529 -22327611 + AluJo SINE Alu 76 308 -4 355 257 40 0 chrX 154646590 154646691 -22327449 + Charlie5 DNA MER1_type 2433 2537 -75 323 203 14 0 chrX 154647347 154647416 -22326724 - MER3 DNA MER1_type -122 87 18 183 184 0 0 chrX 154647628 154647666 -22326474 + CT-rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chrX 154649690 154649711 -22324429 + GC_rich Low_complexity Low_complexity 1 21 0 521 98 0 12 chrX 154649921 154650003 -22324137 + (CGG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chrX 154650098 154650119 -22324021 + GC_rich Low_complexity Low_complexity 1 21 0 464 280 0 63 chrX 154654281 154654423 -22319717 + MIR3 SINE MIR 63 198 -10 2230 91 0 3 chrX 154654462 154654760 -22319380 - AluSg SINE Alu -13 297 1 231 125 0 0 chrX 154656948 154656988 -22317152 + (CCG)n Simple_repeat Simple_repeat 3 42 0 38 0 0 0 chrX 154657185 154657223 -22316917 + GC_rich Low_complexity Low_complexity 1 38 0 284 48 24 0 chrX 154657262 154657304 -22316836 + (CCCCG)n Simple_repeat Simple_repeat 4 46 0 33 56 0 0 chrX 154657350 154657404 -22316736 + GC_rich Low_complexity Low_complexity 1 54 0 206 254 239 7 chrX 154659119 154659229 -22314911 - MIR SINE MIR -79 183 43 183 130 22 43 chrX 154660068 154660114 -22314026 + L2 LINE L2 3015 3059 -213 1196 275 120 9 chrX 154663118 154663666 -22310474 + L2 LINE L2 2714 3313 0 233 310 82 76 chrX 154663697 154663736 -22310404 - MIR SINE MIR -48 214 177 2226 63 3 51 chrX 154663736 154664051 -22310089 + AluSg SINE Alu 1 300 -10 233 310 82 76 chrX 154664051 154664169 -22309971 - MIR SINE MIR -85 177 56 482 221 106 80 chrX 154664590 154664789 -22309351 + MIR SINE MIR 52 255 -7 240 35 0 0 chrX 154665338 154665367 -22308773 + (CCG)n Simple_repeat Simple_repeat 2 30 0 207 69 0 0 chrX 154665767 154665796 -22308344 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 919 114 8 0 chrX 154665818 154665949 -22308191 - FLAM_A SINE Alu -1 132 1 238 283 28 41 chrX 154666049 154666194 -22307946 - L2 LINE L2 -1147 2167 2025 2312 76 0 3 chrX 154666209 154666510 -22307630 + AluSc SINE Alu 1 300 -9 180 237 0 79 chrX 154666987 154667063 -22307077 - L2 LINE L2 -21 3251 3182 2339 83 7 0 chrX 154667274 154667575 -22306565 + AluSq SINE Alu 1 303 -10 2516 50 0 0 chrX 154667576 154667874 -22306266 + AluY SINE Alu 1 298 -13 363 310 107 43 chrX 154667878 154667916 -22306224 - L1ME3A LINE L1 -9 6161 6127 2339 68 3 19 chrX 154667916 154668226 -22305914 + AluSx SINE Alu 1 305 -7 363 310 107 43 chrX 154668226 154668374 -22305766 - L1ME3A LINE L1 -43 6127 5963 2158 104 27 0 chrX 154668508 154668806 -22305334 - AluSq SINE Alu -7 306 1 714 219 102 50 chrX 154668828 154669023 -22305117 - L1ME3A LINE L1 -267 5903 5687 2301 88 13 0 chrX 154669023 154669330 -22304810 - AluY SINE Alu 0 311 1 714 219 102 50 chrX 154669330 154669417 -22304723 - L1ME3A LINE L1 -483 5687 5606 1492 220 24 19 chrX 154669440 154669818 -22304322 + MLT1C LTR MaLR 87 466 -1 2163 102 0 13 chrX 154669861 154670166 -22303974 - AluSq SINE Alu -12 301 1 1390 167 24 36 chrX 154670166 154670495 -22303645 - L1MB3 LINE L1 -45 6138 5814 2197 66 19 53 chrX 154670496 154670815 -22303325 - AluY SINE Alu -1 310 3 243 61 0 0 chrX 154670817 154670850 -22303290 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2038 104 7 17 chrX 154670850 154671001 -22303139 - AluSx SINE Alu -27 285 134 2386 58 0 19 chrX 154671001 154671310 -22302830 - AluY SINE Alu -8 303 1 2292 80 3 3 chrX 154671310 154671611 -22302529 - AluSp SINE Alu -12 301 1 2038 104 7 17 chrX 154671611 154671746 -22302394 - AluSx SINE Alu -176 136 1 199 302 194 7 chrX 154672173 154672312 -22301828 + MIR SINE MIR 66 230 -32 377 357 35 23 chrX 154675622 154675793 -22298347 + HAL1b LINE L1 758 930 -418 23 0 0 0 chrX 154676049 154676072 -22298068 + AT_rich Low_complexity Low_complexity 1 23 0 618 319 178 30 chrX 154676789 154676999 -22297141 + L2 LINE L2 1998 2176 -1138 2473 63 0 0 chrX 154676999 154677301 -22296839 - AluY SINE Alu -9 302 1 618 319 178 30 chrX 154677301 154677698 -22296442 + L2 LINE L2 2176 2695 -619 1910 71 32 115 chrX 154677699 154678037 -22296103 - AluYb8 SINE Alu -8 310 1 1136 72 0 0 chrX 154678038 154678177 -22295963 - AluSq/x SINE Alu -173 140 2 2182 112 10 0 chrX 154678248 154678553 -22295587 - AluSx SINE Alu -4 308 1 799 144 0 12 chrX 154678558 154678718 -22295422 + (TCTA)n Simple_repeat Simple_repeat 4 161 0 628 165 0 91 chrX 154678722 154678767 -22295373 - FLAM_A SINE Alu -201 110 63 1534 187 31 7 chrX 154678767 154679056 -22295084 + AluJo SINE Alu 1 296 -16 628 165 0 91 chrX 154679056 154679131 -22295009 - FLAM_A SINE Alu -248 63 1 2325 89 7 0 chrX 154679141 154679444 -22294696 - AluSp SINE Alu -7 306 2 2505 47 3 0 chrX 154679446 154679743 -22294397 - AluY SINE Alu -13 298 1 844 178 0 0 chrX 154679830 154679959 -22294181 - FLAM_C SINE Alu -3 130 2 413 277 76 2 chrX 154680058 154680195 -22293945 + MIR SINE MIR 37 188 -20 377 293 87 60 chrX 154681070 154681336 -22292804 + L2 LINE L2 2427 2699 -615 981 135 19 0 chrX 154682772 154682928 -22291212 - AluJb SINE Alu -14 298 140 443 79 0 0 chrX 154682928 154682991 -22291149 - Alu SINE Alu -255 63 1 347 220 88 0 chrX 154683142 154683233 -22290907 - L1MB5 LINE L1 -66 6108 6010 2020 97 23 32 chrX 154683254 154683563 -22290577 - AluSx SINE Alu -5 307 2 1909 119 4 0 chrX 154683569 154683846 -22290294 - AluSx SINE Alu 0 312 35 2098 80 6 55 chrX 154683867 154684192 -22289948 - AluSg SINE Alu -1 309 1 349 293 143 14 chrX 154684325 154684472 -22289668 - L1MC4a LINE L1 -211 7597 7432 208 306 0 10 chrX 154685372 154685470 -22288670 + GA-rich Low_complexity Low_complexity 1 97 0 303 299 164 15 chrX 154685717 154685851 -22288289 + L1MB7 LINE L1 5575 5728 -393 1018 165 18 64 chrX 154685868 154685919 -22288221 + AluJb SINE Alu 95 147 -165 2318 93 0 0 chrX 154685919 154686219 -22287921 + AluSx SINE Alu 1 300 -12 1018 165 18 64 chrX 154686219 154686385 -22287755 + AluJb SINE Alu 147 302 -10 1321 81 0 0 chrX 154686393 154686565 -22287575 + AluSc SINE Alu 135 306 -3 2380 80 3 3 chrX 154686614 154686926 -22287214 + AluSx SINE Alu 1 312 0 713 149 0 166 chrX 154686931 154687106 -22287034 + FRAM SINE Alu 26 171 -5 929 126 0 0 chrX 154687115 154687258 -22286882 + L1MB3 LINE L1 5527 5669 -514 607 65 0 0 chrX 154687258 154687335 -22286805 + Alu SINE Alu 1 77 -232 878 129 0 23 chrX 154687346 154687478 -22286662 + FLAM_C SINE Alu 5 133 0 2346 78 3 0 chrX 154687487 154687783 -22286357 + AluSp SINE Alu 5 301 -12 183 80 0 0 chrX 154687787 154687812 -22286328 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 736 108 0 95 chrX 154687812 154687882 -22286258 + L1MB3 LINE L1 5772 5820 -363 2391 48 10 0 chrX 154687882 154688176 -22285964 + AluY SINE Alu 1 297 -14 736 108 0 95 chrX 154688176 154688263 -22285877 + L1MB3 LINE L1 5820 5914 -269 438 119 30 0 chrX 154688263 154688330 -22285810 - AluS SINE Alu -16 295 227 489 108 0 0 chrX 154688366 154688431 -22285709 - Alu SINE Alu -18 292 228 992 175 6 0 chrX 154689833 154690004 -22284136 + FRAM SINE Alu 1 172 -4 961 233 51 21 chrX 154690026 154690379 -22283761 + L1MB7 LINE L1 5769 6161 -12 451 270 67 61 chrX 154696771 154696951 -22277189 - HERV16 LTR ERVL -3111 1885 1733 1422 149 76 29 chrX 154696995 154697131 -22277009 + AluJb SINE Alu 1 129 -183 2381 74 0 10 chrX 154697131 154697435 -22276705 + AluSg SINE Alu 1 303 -7 180 0 0 0 chrX 154697435 154697455 -22276685 + (TA)n Simple_repeat Simple_repeat 2 21 0 1422 149 76 29 chrX 154697462 154697601 -22276539 + AluJb SINE Alu 129 289 -23 2133 102 14 0 chrX 154697610 154697905 -22276235 + AluSx SINE Alu 1 299 -13 2101 100 0 26 chrX 154697915 154698226 -22275914 + AluSx SINE Alu 1 303 -9 413 276 147 0 chrX 154698329 154698485 -22275655 + MER91A DNA MER1_type 18 196 0 2315 88 7 0 chrX 154698666 154698974 -22275166 - AluSp SINE Alu -3 310 1 1764 171 0 13 chrX 154698974 154699277 -22274863 - AluJo SINE Alu -13 299 1 213 241 35 0 chrX 154699346 154699404 -22274736 + L2 LINE L2 3169 3228 -85 2214 110 7 0 chrX 154699867 154700177 -22273963 + AluSx SINE Alu 1 312 0 1730 159 11 0 chrX 154700544 154700827 -22273313 + AluJo SINE Alu 9 294 -18 362 270 68 133 chrX 154700897 154701108 -22273032 + L1ME LINE L1 5400 5590 -531 1615 156 17 21 chrX 154701108 154701396 -22272744 + AluJo SINE Alu 11 297 -15 362 270 68 133 chrX 154701396 154701462 -22272678 + L1ME LINE L1 5590 5659 -462 1167 128 0 27 chrX 154701521 154701708 -22272432 + AluSp SINE Alu 120 301 -12 738 72 10 0 chrX 154701723 154701820 -22272320 + AluSq SINE Alu 1 98 -215 672 211 8 0 chrX 154701828 154701956 -22272184 + AluSp/q SINE Alu 184 312 -1 2369 77 3 0 chrX 154702003 154702303 -22271837 - AluSg SINE Alu -9 301 1 2286 86 3 7 chrX 154702417 154702719 -22271421 - AluSx SINE Alu -11 301 1 1476 149 22 56 chrX 154702812 154703135 -22271005 + AluJb SINE Alu 1 312 0 342 153 0 0 chrX 154703582 154703641 -22270499 + (CTGGGG)n Simple_repeat Simple_repeat 6 64 0 216 265 0 0 chrX 154705155 154705204 -22268936 + CT-rich Low_complexity Low_complexity 5 53 0 376 262 138 32 chrX 154705560 154705900 -22268240 - MLT1F LTR MaLR -81 461 86 1968 123 10 3 chrX 154711447 154711739 -22262401 + AluSc SINE Alu 1 294 -15 2189 110 3 0 chrX 154711763 154712055 -22262085 + AluSx SINE Alu 1 293 -19 195 129 0 0 chrX 154712833 154712864 -22261276 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 25 0 0 0 chrX 154715069 154715094 -22259046 + GC_rich Low_complexity Low_complexity 1 25 0 2142 93 6 53 chrX 154716239 154716561 -22257579 - AluSx SINE Alu -5 307 1 2113 101 40 0 chrX 154717932 154718230 -22255910 - AluSg SINE Alu 0 310 1 2330 85 13 0 chrX 154718238 154718544 -22255596 - AluSg SINE Alu 0 310 1 1799 179 7 0 chrX 154718544 154718840 -22255300 - AluJo SINE Alu -14 298 1 259 285 0 73 chrX 154719426 154719577 -22254563 - SUBTEL_sa Satellite Satellite -28 146 7 23 0 0 0 chrX 154723283 154723306 -22250834 + GC_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chrX 154723466 154723504 -22250636 + GC_rich Low_complexity Low_complexity 1 38 0 204 273 0 0 chrX 154728271 154728315 -22245825 + C-rich Low_complexity Low_complexity 4 47 0 1356 226 43 77 chrX 154730209 154730399 -22243741 - L1MB7 LINE L1 -185 5999 5804 2108 87 4 0 chrX 154730399 154730698 -22243442 - AluY SINE Alu 0 304 5 2082 112 7 7 chrX 154730705 154731000 -22243140 - AluSp SINE Alu -18 295 1 1356 226 43 77 chrX 154731000 154731292 -22242848 - L1MB7 LINE L1 -386 5798 5525 2326 96 0 0 chrX 154733058 154733370 -22240770 - AluSx SINE Alu 0 312 1 290 231 15 0 chrX 154736130 154736195 -22237945 + MIR SINE MIR 76 141 -121 192 261 62 0 chrX 154737085 154737150 -22236990 + MIR3 SINE MIR 104 172 -36 210 337 12 12 chrX 154743546 154743632 -22230508 + MIR SINE MIR 36 121 -87 2545 50 0 0 chrX 154745936 154746238 -22227902 + AluY SINE Alu 1 302 -9 476 262 138 32 chrX 154750247 154750587 -22223553 + MLT1F LTR MaLR 86 461 -81 216 265 0 0 chrX 154750943 154750992 -22223148 + GA-rich Low_complexity Low_complexity 5 53 0 342 153 0 0 chrX 154752506 154752565 -22221575 + (CCCCAG)n Simple_repeat Simple_repeat 6 64 0 1427 133 34 68 chrX 154753012 154753335 -22220805 - AluJb SINE Alu 0 312 1 2271 86 3 7 chrX 154753428 154753731 -22220409 + AluSx SINE Alu 1 302 -10 2387 76 0 0 chrX 154753845 154754146 -22219994 + AluSg SINE Alu 1 301 -9 665 211 8 0 chrX 154754193 154754321 -22219819 - AluSq SINE Alu -1 312 184 733 73 10 0 chrX 154754329 154754425 -22219715 - AluSq SINE Alu -215 98 2 1146 123 0 27 chrX 154754441 154754628 -22219512 - AluSp SINE Alu -12 301 120 229 264 56 28 chrX 154754671 154754743 -22219397 - L1ME LINE L1 -495 5675 5602 1555 158 18 21 chrX 154754754 154755039 -22219101 - AluJo SINE Alu -18 294 11 1689 159 11 0 chrX 154755320 154755603 -22218537 - AluJo SINE Alu -18 294 9 2183 110 7 0 chrX 154755970 154756280 -22217860 - AluSx SINE Alu 0 312 1 202 241 35 0 chrX 154756744 154756802 -22217338 - L2 LINE L2 -85 3228 3169 1708 174 0 13 chrX 154756871 154757175 -22216965 + AluJo SINE Alu 1 300 -12 2233 97 3 0 chrX 154757175 154757474 -22216666 + AluSp SINE Alu 1 301 -12 345 300 135 0 chrX 154757658 154757828 -22216312 - MER91A DNA MER1_type 0 196 4 2007 107 7 19 chrX 154757917 154758226 -22215914 - AluSg SINE Alu -5 305 1 611 167 117 8 chrX 154758535 154758655 -22215485 + FLAM_C SINE Alu 1 133 0 248 246 18 0 chrX 154759313 154759370 -22214770 - MIR SINE MIR -79 183 126 261 284 12 0 chrX 154759836 154759917 -22214223 + L1MEd LINE L1 933 1014 -5105 522 347 41 11 chrX 154760566 154760837 -22213303 + ERVL LTR ERVL 363 641 -5123 551 211 60 119 chrX 154762363 154762681 -22211459 + L1MB7 LINE L1 5588 5886 -298 192 259 0 56 chrX 154762794 154762848 -22211292 - MIR SINE MIR -89 173 123 821 140 0 44 chrX 154763017 154763153 -22210987 + FLAM_C SINE Alu 1 130 -3 2054 119 0 3 chrX 154763269 154763562 -22210578 - AluSx SINE Alu -20 292 1 830 294 143 17 chrX 154764913 154765376 -22208764 + MER68 LTR ERV1 2 522 -40 2233 121 0 6 chrX 154765558 154765893 -22208247 - AluSx SINE Alu 0 333 1 284 335 103 37 chrX 154766837 154767079 -22207061 - MIR SINE MIR -3 259 2 335 244 157 9 chrX 154767703 154767818 -22206322 + L1ME4a LINE L1 5893 6024 -97 292 357 101 0 chrX 154767932 154768061 -22206079 + MIR SINE MIR 43 184 -78 1448 169 3 21 chrX 154768139 154768423 -22205717 - AluJo SINE Alu -3 309 31 500 301 76 13 chrX 154769429 154769665 -22204475 - L1ME2 LINE L1 -12 6152 5902 1938 117 29 16 chrX 154769715 154770023 -22204117 + AluSx SINE Alu 1 312 0 261 221 13 52 chrX 154770519 154770596 -22203544 + LTR33A LTR ERVL 450 523 0 311 182 91 39 chrX 154770666 154770743 -22203397 + L1ME4a LINE L1 6041 6121 0 1937 131 3 0 chrX 154771614 154771897 -22202243 - AluSx SINE Alu -20 292 9 1389 118 24 0 chrX 154771903 154772115 -22202025 - AluSc SINE Alu -8 301 85 206 375 126 11 chrX 154773697 154773958 -22200182 + L2 LINE L2 1575 1865 -1449 472 311 93 35 chrX 154774244 154774399 -22199741 + Charlie2 DNA MER1_type 1 146 -2716 1994 102 20 14 chrX 154774399 154774693 -22199447 - AluSx SINE Alu -14 298 3 472 311 93 35 chrX 154774693 154774849 -22199291 + Charlie2 DNA MER1_type 146 330 -2532 813 213 172 21 chrX 154774868 154775368 -22198772 + Charlie2 DNA MER1_type 1952 2688 -174 764 159 0 83 chrX 154775368 154775425 -22198715 - FLAM_C SINE Alu -169 133 73 2490 39 0 26 chrX 154775425 154775736 -22198404 - AluY SINE Alu -8 303 1 764 159 0 83 chrX 154775736 154775823 -22198317 - FLAM_C SINE Alu -229 73 1 813 213 172 21 chrX 154775823 154775932 -22198208 + Charlie2 DNA MER1_type 2688 2779 -83 866 166 0 0 chrX 154775948 154776093 -22198047 + FRAM SINE Alu 28 172 -4 585 290 191 23 chrX 154776210 154776848 -22197292 + L2 LINE L2 2305 3060 -253 2108 107 0 28 chrX 154777083 154777402 -22196738 + AluSx SINE Alu 1 310 -2 368 304 18 0 chrX 154777475 154777587 -22196553 - Charlie8 DNA MER1_type -2204 213 100 729 179 86 19 chrX 154777587 154777749 -22196391 - AluJo SINE Alu -15 297 125 23 0 0 0 chrX 154777758 154777781 -22196359 + AT_rich Low_complexity Low_complexity 1 23 0 2170 68 25 4 chrX 154777783 154778064 -22196076 + AluY SINE Alu 1 287 -24 2202 93 3 0 chrX 154779326 154779617 -22194523 + AluSx SINE Alu 1 292 -20 749 352 75 37 chrX 154779617 154780134 -22194006 - L1M4 LINE L1 -2208 3938 3402 1701 173 10 3 chrX 154780202 154780497 -22193643 - AluJo SINE Alu -15 297 1 562 235 27 50 chrX 154780970 154781214 -22192926 + L1PB3 LINE L1 5920 6155 -1 523 274 217 14 chrX 154781705 154781754 -22192386 - L2 LINE L2 -300 2972 2934 866 166 6 49 chrX 154781754 154781917 -22192223 - FRAM SINE Alu -10 156 1 523 274 217 14 chrX 154781917 154782318 -22191822 - L2 LINE L2 -338 2934 2424 372 279 0 33 chrX 154782362 154782484 -22191656 + Charlie2 DNA MER1_type 2677 2794 -68 1761 91 106 7 chrX 154783700 154783974 -22190166 - AluSx SINE Alu -11 301 1 2166 100 3 0 chrX 154784114 154784404 -22189736 + AluSx SINE Alu 1 291 -21 641 308 160 19 chrX 154785529 154786098 -22188042 + L2 LINE L2 2563 3219 -94 248 98 0 0 chrX 154786916 154786957 -22187183 - AluJo SINE Alu -5 297 257 903 136 169 6 chrX 154786958 154787135 -22187005 - AluJo SINE Alu -106 206 1 1669 162 23 13 chrX 154787216 154787525 -22186615 + AluJo SINE Alu 1 312 0 1931 143 0 7 chrX 154787830 154788124 -22186016 - AluSx SINE Alu -20 292 1 887 147 7 0 chrX 154789555 154789698 -22184442 - FRAM SINE Alu -32 144 1 1570 159 0 63 chrX 154790619 154790972 -22183168 + AluJb SINE Alu 1 334 0 857 231 122 90 chrX 154791086 154791487 -22182653 - MLT1C LTR MaLR -1 466 53 1334 202 89 12 chrX 154791487 154791814 -22182326 + MLT1A1 LTR MaLR 2 353 -12 1063 68 0 0 chrX 154792257 154792390 -22181750 + AluSp SINE Alu 1 133 -180 2190 103 0 3 chrX 154792615 154792916 -22181224 - AluSx SINE Alu -12 300 1 454 234 17 40 chrX 154792920 154793095 -22181045 + L1 LINE L1 2755 2925 -3221 * 1700 176 37 54 chrX 154793064 154793154 -22180986 + L1 LINE L1 4155 4245 -1901 1844 113 29 11 chrX 154793154 154793429 -22180711 + AluSx SINE Alu 1 280 -32 221 30 61 0 chrX 154793431 154793464 -22180676 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1700 176 37 54 chrX 154793464 154793830 -22180310 + L1 LINE L1 4246 4606 -1540 2217 93 3 0 chrX 154793837 154794139 -22180001 + AluSg SINE Alu 1 303 -7 3301 116 56 12 chrX 154794166 154794684 -22179456 + L1PB2 LINE L1 5611 6151 0 397 263 0 15 chrX 154794684 154794695 -22179445 + L1 LINE L1 2901 2911 -3235 2348 93 3 0 chrX 154794695 154795007 -22179133 + AluSp SINE Alu 1 313 0 397 263 0 15 chrX 154795007 154795128 -22179012 + L1 LINE L1 2911 3031 -3115 804 129 9 0 chrX 154795141 154795257 -22178883 + AluSq/x SINE Alu 2 118 -194 263 143 0 0 chrX 154795257 154795306 -22178834 + Alu SINE Alu 254 302 0 317 199 78 31 chrX 154795313 154795440 -22178700 + L1 LINE L1 3045 3198 -2948 1673 143 65 0 chrX 154795440 154795719 -22178421 - AluJb SINE Alu -15 297 1 317 199 78 31 chrX 154795719 154795752 -22178388 + L1 LINE L1 3198 3228 -2918 1002 119 6 25 chrX 154795768 154795928 -22178212 + FRAM SINE Alu 1 157 -19 877 242 72 53 chrX 154795936 154796235 -22177905 + L1 LINE L1 3291 3583 -2563 1014 191 171 23 chrX 154796235 154796492 -22177648 - AluSx SINE Alu -7 295 1 877 242 72 53 chrX 154796492 154796593 -22177547 + L1 LINE L1 3583 3704 -2442 2385 61 7 3 chrX 154796593 154796903 -22177237 + AluY SINE Alu 1 311 0 877 242 72 53 chrX 154796903 154796976 -22177164 + L1 LINE L1 3704 3774 -2372 686 180 31 0 chrX 154797009 154797137 -22177003 - FLAM_C SINE Alu 0 133 2 1335 133 111 22 chrX 154797147 154797417 -22176723 - AluJo SINE Alu -18 294 1 333 211 160 13 chrX 154797417 154797573 -22176567 + L1 LINE L1 3594 3772 -2374 604 113 0 66 chrX 154797577 154797683 -22176457 - AluJb SINE Alu -129 183 85 2218 91 0 3 chrX 154799331 154799627 -22174513 - AluSx SINE Alu -16 296 2 1031 94 13 0 chrX 154799627 154799776 -22174364 + AluSg/x SINE Alu 144 294 -16 1978 116 14 7 chrX 154799778 154800070 -22174070 + AluSp SINE Alu 1 294 -19 413 309 41 20 chrX 154800113 154800407 -22173733 - L1ME LINE L1 -601 5561 5262 1629 137 25 53 chrX 154800445 154800766 -22173374 - AluJb SINE Alu 0 312 1 213 250 0 0 chrX 154800767 154800815 -22173325 + T-rich Low_complexity Low_complexity 1 48 0 2065 111 7 3 chrX 154800894 154801191 -22172949 - AluSx SINE Alu -14 298 1 926 169 0 0 chrX 154801208 154801356 -22172784 - AluJb SINE Alu -18 294 147 864 141 50 82 chrX 154801423 154801537 -22172603 - HAL1 LINE L1 -854 1653 1548 2089 101 23 7 chrX 154801537 154801843 -22172297 - AluSx SINE Alu -1 311 1 864 141 50 82 chrX 154801843 154801948 -22172192 - HAL1 LINE L1 -959 1548 1441 368 277 105 60 chrX 154801938 154802087 -22172053 - L1MEc LINE L1 -4805 1505 1364 * 2319 75 3 3 chrX 154802087 154802392 -22171748 + AluSq SINE Alu 1 305 -8 368 277 105 60 chrX 154802392 154802526 -22171614 - L1MEc LINE L1 -4946 1364 1238 1841 137 7 19 chrX 154802526 154802833 -22171307 + AluSx SINE Alu 1 303 -9 368 277 105 60 chrX 154802833 154803018 -22171122 - L1MEc LINE L1 -5072 1238 1031 2162 114 0 13 chrX 154803018 154803335 -22170805 - AluSq SINE Alu 0 313 1 368 277 105 60 chrX 154803335 154803417 -22170723 - L1MEc LINE L1 -5279 1031 954 1944 117 10 10 chrX 154803423 154803731 -22170409 - AluSx SINE Alu -3 309 2 852 66 74 0 chrX 154803744 154803866 -22170274 - AluSg SINE Alu -179 131 1 1403 239 108 75 chrX 154803897 154804604 -22169536 - L1ME3A LINE L1 -15 6155 5426 2134 115 0 7 chrX 154804617 154804921 -22169219 + AluSx SINE Alu 1 302 -10 413 248 82 0 chrX 154805001 154805109 -22169031 - MIR SINE MIR -62 146 43 195 300 0 0 chrX 154805181 154805231 -22168909 + L2 LINE L2 3151 3200 -72 198 71 0 0 chrX 154805259 154805287 -22168853 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 2230 99 0 0 chrX 154806993 154807296 -22166844 - AluSc SINE Alu -6 303 1 207 0 0 0 chrX 154807349 154807372 -22166768 + (A)n Simple_repeat Simple_repeat 1 23 0 3179 151 45 45 chrX 154808622 154808808 -22165332 + MER73 LTR ERVL 1 186 -458 1998 123 3 16 chrX 154808808 154809117 -22165023 + AluJb SINE Alu 1 305 -7 3179 151 45 45 chrX 154809117 154809574 -22164566 + MER73 LTR ERVL 185 644 0 3067 217 49 18 chrX 154809589 154809826 -22164314 - L1MB5 LINE L1 -6 6168 5932 411 359 68 29 chrX 154809826 154810386 -22163754 - L1ME4a LINE L1 -188 5933 5352 528 168 0 0 chrX 154810386 154810487 -22163653 + CT-rich Low_complexity Low_complexity 2 102 0 1397 128 125 36 chrX 154810488 154810769 -22163371 - AluJo SINE Alu -4 308 3 2113 103 10 3 chrX 154811729 154812031 -22162109 - AluSx SINE Alu -8 304 1 1094 278 21 21 chrX 154812121 154812509 -22161631 + MLT1C LTR MaLR 74 461 -6 195 195 143 52 chrX 154812520 154812597 -22161543 + L2 LINE L2 3000 3083 -189 2299 82 3 0 chrX 154812633 154812936 -22161204 - AluSp SINE Alu -9 304 1 1524 247 120 10 chrX 154812939 154813429 -22160711 - L1ME2 LINE L1 -10 6154 5611 811 214 230 6 chrX 154813436 154813723 -22160417 - MSTD LTR MaLR 0 396 1 547 195 117 8 chrX 154813724 154813751 -22160389 - L1ME2 LINE L1 -562 5604 5581 2299 60 13 3 chrX 154813751 154814051 -22160089 + AluSp SINE Alu 1 303 -10 547 195 117 8 chrX 154814051 154814151 -22159989 - L1ME2 LINE L1 -585 5581 5463 730 175 0 0 chrX 154814213 154814333 -22159807 - MER20 DNA MER1_type -5 214 95 1582 217 49 46 chrX 154814340 154814819 -22159321 - MLT1D LTR MaLR -6 543 20 2063 122 0 7 chrX 154814819 154815122 -22159018 - AluSx SINE Alu -11 301 1 425 99 0 158 chrX 154815148 154815249 -22158891 - MER20 DNA MER1_type -131 88 4 369 189 298 0 chrX 154815288 154815424 -22158716 - L1ME2 LINE L1 -743 5403 5244 180 342 128 21 chrX 154815427 154815614 -22158526 + L2 LINE L2 3107 3313 0 461 291 67 17 chrX 154815727 154815906 -22158234 + MIR SINE MIR 16 203 -59 1674 169 0 33 chrX 154816004 154816306 -22157834 + AluJo SINE Alu 1 292 -20 772 85 17 0 chrX 154816307 154816425 -22157715 + (GA)n Simple_repeat Simple_repeat 2 121 0 2077 110 0 17 chrX 154816436 154816737 -22157403 - AluSx SINE Alu -16 296 1 918 151 59 93 chrX 154817007 154817136 -22157004 + L1MB5 LINE L1 5932 6039 -135 2420 34 17 0 chrX 154817136 154817428 -22156712 - AluY SINE Alu -14 297 1 918 151 59 93 chrX 154817428 154817560 -22156580 + L1MB5 LINE L1 6039 6174 0 391 247 84 30 chrX 154818052 154818218 -22155922 - L1MC5 LINE L1 -168 7793 7619 2350 86 0 0 chrX 154818267 154818570 -22155570 - AluSg SINE Alu -7 303 1 631 221 41 143 chrX 154818570 154819054 -22155086 - L1MDa LINE L1 -4628 1912 1478 2113 93 7 7 chrX 154819321 154819621 -22154519 + AluSx SINE Alu 1 300 -12 1796 137 13 27 chrX 154820850 154821149 -22152991 - AluJo SINE Alu -17 295 1 549 178 25 8 chrX 154821158 154821276 -22152864 - L1MB8 LINE L1 0 6178 6059 1797 105 16 46 chrX 154821283 154821415 -22152725 - L1MB7 LINE L1 0 6184 6050 2395 46 3 10 chrX 154821415 154821717 -22152423 - AluY SINE Alu -11 300 1 1797 105 16 46 chrX 154821717 154821890 -22152250 - L1MB7 LINE L1 -134 6050 5888 1499 198 71 25 chrX 154824154 154824508 -22149632 + MLT1C LTR MaLR 98 467 0 258 328 115 0 chrX 154824867 154824989 -22149151 + L1MEd LINE L1 908 1043 -5076 188 222 0 0 chrX 154824992 154825028 -22149112 - MIR SINE MIR -18 244 209 472 164 250 0 chrX 154828284 154828400 -22145740 - L1MB5 LINE L1 0 6174 6030 581 146 131 23 chrX 154828455 154828502 -22145638 - L1MB3 LINE L1 -1 6182 6141 1801 151 7 13 chrX 154828502 154828800 -22145340 + AluJo SINE Alu 1 296 -16 581 146 131 23 chrX 154828800 154828882 -22145258 - L1MB3 LINE L1 -42 6141 6039 201 167 0 24 chrX 154829576 154829618 -22144522 - MIR SINE MIR -86 122 82 1528 211 58 88 chrX 154829914 154830215 -22143925 + Charlie4a DNA MER1_type 20 302 -1659 1800 134 21 0 chrX 154830215 154830499 -22143641 - AluJo SINE Alu -9 303 14 1528 211 58 88 chrX 154830499 154830695 -22143445 + Charlie4a DNA MER1_type 302 502 -6 878 121 0 67 chrX 154832606 154832771 -22141369 + MLT1A1 LTR MaLR 5 158 -207 455 181 72 0 chrX 154832772 154832855 -22141285 + FLAM_A SINE Alu 1 89 -53 735 164 33 0 chrX 154832861 154832983 -22141157 + FLAM_C SINE Alu 1 126 -17 650 216 81 32 chrX 154833008 154833193 -22140947 + MLT1A1 LTR MaLR 144 337 -28 2042 125 3 13 chrX 154833210 154833522 -22140618 - AluSx SINE Alu -3 309 1 2540 61 0 0 chrX 154833533 154833844 -22140296 - AluY SINE Alu 0 311 1 1076 110 6 6 chrX 154833998 154834161 -22139979 + MLT1B LTR MaLR 1 163 -227 1977 87 14 31 chrX 154834197 154834516 -22139624 + AluSx SINE Alu 1 314 0 1416 146 7 71 chrX 154834519 154834800 -22139340 - AluJo SINE Alu -30 282 20 261 250 29 0 chrX 154834966 154835034 -22139106 - MLT1K LTR MaLR -12 576 507 2060 84 7 3 chrX 154835835 154836143 -22137997 + AluSx SINE Alu 1 309 0 1308 256 131 28 chrX 154836333 154837021 -22137119 + L1MC5 LINE L1 7134 7933 -28 186 71 0 0 chrX 154837277 154837305 -22136835 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 2041 95 0 0 chrX 154837311 154837584 -22136556 - AluSc SINE Alu -36 273 1 1747 247 25 5 chrX 154839826 154840267 -22133873 + L1MB7 LINE L1 5626 6075 -109 * 1966 171 29 38 chrX 154840264 154840474 -22133666 + L1MB3 LINE L1 5554 5764 -419 1521 145 0 8 chrX 154840474 154840715 -22133425 + AluJb SINE Alu 1 239 -73 1966 171 29 38 chrX 154840715 154841101 -22133039 + L1MB3 LINE L1 5764 6112 -71 241 260 49 65 chrX 154841116 154841239 -22132901 + L2 LINE L2 2994 3114 -158 210 281 88 26 chrX 154841583 154841697 -22132443 + MIR3 SINE MIR 56 176 -32 558 261 205 3 chrX 154842572 154842819 -22131321 - L1MB3 LINE L1 -8 6175 5873 255 234 160 11 chrX 154843156 154843250 -22130890 + MIR SINE MIR 123 230 -32 714 269 198 13 chrX 154843376 154843949 -22130191 - L2 LINE L2 -173 3140 2467 2185 94 0 23 chrX 154844276 154844585 -22129555 - AluSx SINE Alu -10 302 1 316 200 33 11 chrX 154844743 154844833 -22129307 + L1MB2 LINE L1 5883 5974 -197 1808 149 36 3 chrX 154845117 154845419 -22128721 + AluJo SINE Alu 1 312 0 21 0 0 0 chrX 154845941 154845962 -22128178 + GC_rich Low_complexity Low_complexity 1 21 0 577 116 11 21 chrX 154846270 154846365 -22127775 - L1MB3 LINE L1 0 6183 6090 2295 100 3 0 chrX 154847266 154847577 -22126563 - AluSx SINE Alu 0 312 1 1227 241 106 44 chrX 154847991 154848492 -22125648 - MLT1H LTR MaLR -17 532 1 2240 99 0 10 chrX 154848540 154848853 -22125287 + AluSq SINE Alu 1 310 -3 1874 128 13 13 chrX 154849260 154849564 -22124576 - AluJb SINE Alu -8 304 1 1710 198 11 16 chrX 154849574 154849938 -22124202 - L1MB5 LINE L1 0 6174 5813 1716 132 11 11 chrX 154849987 154850299 -22123841 - AluJo SINE Alu 0 314 3 2045 121 0 0 chrX 154851033 154851314 -22122826 + AluSx SINE Alu 1 281 -31 306 0 0 0 chrX 154851314 154851348 -22122792 + (CA)n Simple_repeat Simple_repeat 1 34 0 1771 152 0 23 chrX 154851422 154851732 -22122408 + AluJo SINE Alu 1 303 -9 2237 88 10 0 chrX 154851991 154852296 -22121844 + AluSg SINE Alu 3 310 0 1033 216 57 57 chrX 154852817 154852973 -22121167 - L1MA6 LINE L1 -1 6299 6141 2052 96 3 7 chrX 154852973 154853266 -22120874 - AluSx SINE Alu 0 312 21 1033 216 57 57 chrX 154853266 154853410 -22120730 - L1MA6 LINE L1 -158 6142 5999 1064 126 0 30 chrX 154853437 154853604 -22120536 - AluJo SINE Alu -19 293 132 383 232 24 0 chrX 154853607 154853689 -22120451 + L1MC4 LINE L1 6613 6696 -1346 709 194 0 0 chrX 154853689 154853813 -22120327 - AluJo SINE Alu -183 129 6 3319 131 57 22 chrX 154853818 154854170 -22119970 - L1MA6 LINE L1 -354 5946 5563 1920 124 6 40 chrX 154854170 154854349 -22119791 - AluJb SINE Alu 0 312 147 2308 84 7 0 chrX 154854349 154854657 -22119483 - AluSp SINE Alu -3 310 1 1920 124 6 40 chrX 154854657 154854800 -22119340 - AluJb SINE Alu -165 147 1 3319 131 57 22 chrX 154854800 154855041 -22119099 - L1MA6 LINE L1 -737 5563 5332 1942 109 0 45 chrX 154855041 154855353 -22118787 - AluSq SINE Alu -15 298 1 808 213 0 0 chrX 154855356 154855497 -22118643 - FRAM SINE Alu -10 166 26 2630 113 39 0 chrX 154855499 154855905 -22118235 - L1M1 LINE L1 -4446 3119 2698 8524 158 28 27 chrX 154855976 154857540 -22116600 - L1M1 LINE L1 -5988 1577 12 1873 138 0 0 chrX 154857914 154858222 -22115918 - AluSx SINE Alu 0 308 1 22 0 0 0 chrX 154858297 154858319 -22115821 + AT_rich Low_complexity Low_complexity 1 22 0 1061 220 106 20 chrX 154858346 154858696 -22115444 - MER69 DNA AcHobo -4 2522 2143 2221 85 0 28 chrX 154858987 154859305 -22114835 - AluSx SINE Alu -3 309 1 869 183 0 67 chrX 154859814 154859994 -22114146 - FRAM SINE Alu -10 166 1 2178 65 11 0 chrX 154861537 154861814 -22112326 + AluSg SINE Alu 1 280 -30 1630 273 42 42 chrX 154862135 154862646 -22111494 + L1M4 LINE L1 3257 3767 -2379 2258 96 0 3 chrX 154862646 154862958 -22111182 + AluSx SINE Alu 1 311 -1 1630 273 42 42 chrX 154862958 154863074 -22111066 + L1M4 LINE L1 3767 3882 -2264 1758 153 20 0 chrX 154863074 154863202 -22110938 + AluJb SINE Alu 1 125 -187 387 0 0 0 chrX 154863202 154863245 -22110895 + (CA)n Simple_repeat Simple_repeat 2 44 0 1758 153 20 0 chrX 154863245 154863410 -22110730 + AluJb SINE Alu 125 300 -12 1630 273 42 42 chrX 154863410 154863613 -22110527 + L1M4 LINE L1 3881 4088 -2058 2236 92 7 0 chrX 154863616 154863920 -22110220 + AluSx SINE Alu 7 312 0 347 285 44 0 chrX 154863935 154864072 -22110068 + L1M4 LINE L1 4942 5084 -1062 1630 167 10 14 chrX 154864203 154864491 -22109649 + AluJo SINE Alu 1 287 -25 255 104 1 35 chrX 154864519 154864673 -22109467 + FLAM_A SINE Alu 1 127 -6 1360 239 55 29 chrX 154864680 154865098 -22109042 - L1ME1 LINE L1 -46 6120 5692 1917 155 7 0 chrX 154865359 154865668 -22108472 + AluSx SINE Alu 1 311 -1 680 282 59 16 chrX 154865827 154866082 -22108058 + HAL1 LINE L1 410 675 -1832 450 278 83 0 chrX 154866104 154866284 -22107856 + HAL1 LINE L1 1303 1497 -1010 601 235 145 17 chrX 154866340 154866690 -22107450 - MER74B LTR ERVL -74 548 65 464 59 15 0 chrX 154866771 154866839 -22107301 + (CA)n Simple_repeat Simple_repeat 1 69 0 623 243 184 13 chrX 154866841 154867150 -22106990 + HAL1 LINE L1 1509 1870 -637 191 250 83 0 chrX 154867595 154867655 -22106485 - L2 LINE L2 0 3272 3208 2177 134 99 3 chrX 154868559 154868924 -22105216 + L1MCa LINE L1 74 473 -5953 3915 206 48 90 chrX 154868925 154869687 -22104453 + L1MCa LINE L1 1529 2321 -4105 2098 102 0 0 chrX 154869687 154870003 -22104137 + AluSx SINE Alu 1 316 0 3915 206 48 90 chrX 154870003 154870226 -22103914 + L1MCa LINE L1 2321 2552 -3874 2162 72 48 3 chrX 154870226 154870518 -22103622 + AluSp SINE Alu 1 305 -8 3915 206 48 90 chrX 154870518 154871268 -22102872 + L1MCa LINE L1 2552 3332 -3094 915 149 0 0 chrX 154871268 154871409 -22102731 + FLAM_C SINE Alu 1 141 -2 3915 206 48 90 chrX 154871409 154871748 -22102392 + L1MCa LINE L1 3332 3731 -2695 2054 131 0 10 chrX 154871748 154872060 -22102080 - AluSx SINE Alu -3 309 1 3915 206 48 90 chrX 154872060 154872176 -22101964 + L1MCa LINE L1 3731 3850 -2576 1419 174 188 0 chrX 154872180 154872473 -22101667 + MER7A DNA MER2_type 1 346 0 1176 223 49 0 chrX 154872474 154872739 -22101401 + L1MCa LINE L1 3854 4131 -2295 2141 75 72 0 chrX 154872742 154873034 -22101106 + AluSq SINE Alu 1 313 0 1044 133 0 6 chrX 154873043 154873232 -22100908 + AluSg/x SINE Alu 127 314 0 4411 120 3 2 chrX 154873234 154873874 -22100266 + L1MC1 LINE L1 5319 5959 -374 583 118 21 0 chrX 154873874 154873956 -22100184 + L1MC1 LINE L1 6239 6333 0 283 248 26 4 chrX 154874005 154874102 -22100038 + LTR33 LTR ERVL 61 176 -345 1441 104 0 0 chrX 154874312 154874504 -22099636 + MSTA LTR MaLR 1 192 -236 1020 89 19 25 chrX 154874504 154874661 -22099479 + AluSg/x SINE Alu 145 300 -10 2097 128 0 10 chrX 154875192 154875505 -22098635 - AluSx SINE Alu -2 310 1 2325 60 3 3 chrX 154875527 154875828 -22098312 - AluY SINE Alu -5 306 6 1395 249 98 50 chrX 154875841 154875974 -22098166 - HAL1 LINE L1 -427 2080 1955 2424 66 0 0 chrX 154875974 154876276 -22097864 - AluSx SINE Alu -10 302 1 1395 249 98 50 chrX 154876276 154877152 -22096988 - HAL1 LINE L1 -552 1955 812 2217 109 0 3 chrX 154877704 154878016 -22096124 - AluSx SINE Alu -1 311 1 666 109 0 0 chrX 154878075 154878194 -22095946 + (TG)n Simple_repeat Simple_repeat 2 120 0 378 145 0 0 chrX 154878351 154878413 -22095727 - AluJo SINE Alu -5 297 236 1156 138 21 5 chrX 154878413 154878602 -22095538 - AluJo SINE Alu -120 192 1 2407 72 0 0 chrX 154878861 154879165 -22094975 - AluY SINE Alu -7 304 1 284 321 22 44 chrX 154879361 154879632 -22094508 - L1M4 LINE L1 -1543 4603 4339 5579 131 27 30 chrX 154879763 154879981 -22094159 - L1MA6 LINE L1 -5 6295 6078 1921 126 14 17 chrX 154879981 154880275 -22093865 - AluSx SINE Alu -19 293 1 5579 131 27 30 chrX 154880275 154880957 -22093183 - L1MA6 LINE L1 -222 6078 5396 195 42 0 0 chrX 154880965 154880989 -22093151 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1761 168 7 3 chrX 154880989 154881284 -22092856 - AluJo SINE Alu -12 300 2 5579 131 27 30 chrX 154881284 154881357 -22092783 - L1MA6 LINE L1 -904 5396 5324 537 144 0 0 chrX 154881375 154881465 -22092675 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 2040 97 0 17 chrX 154881465 154881753 -22092387 - AluSc SINE Alu -26 283 1 1431 129 4 37 chrX 154881756 154881997 -22092143 - AluJo SINE Alu -6 306 74 544 243 203 67 chrX 154882019 154882379 -22091761 - L1M4 LINE L1 -2196 3950 3640 261 0 0 0 chrX 154882379 154882408 -22091732 + (TC)n Simple_repeat Simple_repeat 2 30 0 544 243 203 67 chrX 154882408 154882825 -22091315 - L1M4 LINE L1 -2506 3640 3071 1341 269 212 26 chrX 154882869 154883351 -22090789 + L2 LINE L2 2264 2655 -658 1763 136 7 4 chrX 154883351 154883630 -22090510 + AluJb SINE Alu 1 280 -32 1341 269 212 26 chrX 154883630 154884034 -22090106 + L2 LINE L2 2655 3294 -19 22 35 0 0 chrX 154884965 154884994 -22089146 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chrX 154885123 154885143 -22088997 + (CCG)n Simple_repeat Simple_repeat 3 22 0 27 0 0 0 chrX 154885447 154885474 -22088666 + GC_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chrX 154885530 154885566 -22088574 + GC_rich Low_complexity Low_complexity 1 36 0 2119 79 6 70 chrX 154888939 154889269 -22084871 - AluSg1 SINE Alu 0 309 1 262 300 118 18 chrX 154889309 154889419 -22084721 - MIR3 SINE MIR -10 198 78 192 152 0 0 chrX 154890668 154890701 -22083439 + A-rich Low_complexity Low_complexity 1 33 0 239 0 32 0 chrX 154891379 154891410 -22082730 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2181 106 0 0 chrX 154892341 154892643 -22081497 + AluSx SINE Alu 1 302 -10 236 227 113 64 chrX 154892684 154892786 -22081354 - L1ME4a LINE L1 -96 6025 5912 2165 86 4 0 chrX 154892786 154893096 -22081044 - AluSx SINE Alu 0 311 1 236 227 113 64 chrX 154893096 154893133 -22081007 - L1ME4a LINE L1 -209 5912 5878 228 315 94 8 chrX 154893292 154893419 -22080721 - L1ME4a LINE L1 -2208 5600 5463 2482 52 0 3 chrX 154893610 154893919 -22080221 - AluY SINE Alu -3 308 1 2187 107 0 0 chrX 154894029 154894329 -22079811 + AluSx SINE Alu 1 300 -12 284 232 116 0 chrX 154894611 154894680 -22079460 - L2 LINE L2 0 3272 3196 889 132 0 107 chrX 154895055 154895252 -22078888 + FRAM SINE Alu 1 176 0 2163 116 3 0 chrX 154895515 154895818 -22078322 + AluSx SINE Alu 1 304 -8 2180 114 0 0 chrX 154895827 154896126 -22078014 + AluSq SINE Alu 1 299 -14 2261 79 0 3 chrX 154896229 154896519 -22077621 + AluSc SINE Alu 1 289 -20 28 0 0 0 chrX 154896538 154896566 -22077574 + AT_rich Low_complexity Low_complexity 1 28 0 2333 49 0 3 chrX 154896568 154896856 -22077284 + AluY SINE Alu 1 287 -24 1044 154 28 28 chrX 154896865 154897079 -22077061 - L1MB3 LINE L1 -19 6164 5951 343 265 75 27 chrX 154897167 154897314 -22076826 - L1MC4a LINE L1 -1897 5911 5758 1505 175 0 63 chrX 154897319 154897650 -22076490 - AluJo SINE Alu -1 311 2 318 287 112 137 chrX 154898128 154898529 -22075611 - L2 LINE L2 -23 3249 2859 2069 107 40 0 chrX 154898555 154898872 -22075268 - AluSx SINE Alu 0 329 1 21 0 0 0 chrX 154899206 154899227 -22074913 + AT_rich Low_complexity Low_complexity 1 21 0 2253 97 0 0 chrX 154900239 154900538 -22073602 + AluSx SINE Alu 1 299 -13 880 103 0 16 chrX 154901060 154901186 -22072954 + FLAM_C SINE Alu 1 124 -19 1608 173 148 42 chrX 154901298 154901382 -22072758 + Charlie4a DNA MER1_type 30 104 -1857 895 145 0 0 chrX 154901382 154901513 -22072627 + AluJo/FLAM SINE Alu 2 132 -170 2354 84 0 0 chrX 154901516 154901815 -22072325 + AluSx SINE Alu 1 299 -13 1608 173 148 42 chrX 154901815 154902159 -22071981 + Charlie4a DNA MER1_type 105 508 0 822 164 0 0 chrX 154902206 154902328 -22071812 + FLAM_A SINE Alu 1 122 -11 2067 93 7 0 chrX 154902558 154902879 -22071261 - AluSc SINE Alu 0 323 1 352 258 107 44 chrX 154902881 154902943 -22071197 - L1ME4a LINE L1 -118 6003 5946 1704 155 24 7 chrX 154902943 154903233 -22070907 - AluJb SINE Alu -17 295 1 352 258 107 44 chrX 154903233 154903329 -22070811 - L1ME4a LINE L1 -175 5946 5835 1759 162 13 10 chrX 154903377 154903686 -22070454 - AluJb SINE Alu -2 310 1 293 174 137 56 chrX 154903690 154903851 -22070289 - L1ME4a LINE L1 -4 6117 5944 928 256 123 58 chrX 154903907 154904173 -22069967 + L2 LINE L2 2198 2445 -869 2756 10 0 0 chrX 154904173 154904482 -22069658 - AluYb8 SINE Alu -9 309 1 1896 85 81 7 chrX 154904484 154904756 -22069384 - AluSg SINE Alu -18 292 1 928 256 123 58 chrX 154904756 154904868 -22069272 + L2 LINE L2 2445 2604 -710 21 0 0 0 chrX 154904969 154904990 -22069150 + AT_rich Low_complexity Low_complexity 1 21 0 3640 72 2 0 chrX 154904995 154905465 -22068675 - L1PB1 LINE L1 -1 6150 5680 600 266 123 83 chrX 154905696 154905896 -22068244 - L2 LINE L2 -4 3268 3077 2089 142 39 6 chrX 154905896 154906233 -22067907 + MER7A DNA MER2_type 1 346 0 600 266 123 83 chrX 154906233 154906479 -22067661 - L2 LINE L2 -195 3077 2804 434 290 72 19 chrX 154906541 154906803 -22067337 - HAL1 LINE L1 -4 2503 2228 2162 106 0 0 chrX 154906835 154907127 -22067013 - AluSx SINE Alu -20 292 1 336 352 55 16 chrX 154907154 154907336 -22066804 - HAL1b LINE L1 -440 908 720 602 239 142 44 chrX 154907688 154907914 -22066226 - HAL1 LINE L1 -596 1911 1664 288 247 13 13 chrX 154907915 154907992 -22066148 + MLT1L LTR MaLR 1 77 -538 537 283 73 41 chrX 154908042 154908435 -22065705 + MLT1L LTR MaLR 179 613 -2 911 243 141 65 chrX 154908437 154908927 -22065213 - HAL1 LINE L1 -844 1663 1127 2014 99 54 0 chrX 154908927 154909221 -22064919 - AluSx SINE Alu -2 310 1 911 243 141 65 chrX 154909221 154909269 -22064871 - HAL1 LINE L1 -1380 1127 1084 1074 233 132 38 chrX 154909304 154909657 -22064483 - L1MC4a LINE L1 -59 7983 7664 2152 91 7 26 chrX 154909657 154909966 -22064174 - AluSx SINE Alu -9 303 1 1074 233 132 38 chrX 154909966 154910081 -22064059 - L1MC4a LINE L1 -378 7664 7561 779 165 0 0 chrX 154910081 154910202 -22063938 - FLAM_A SINE Alu -12 121 1 1074 233 132 38 chrX 154910202 154911154 -22062986 - L1MC4a LINE L1 -481 7561 6613 810 92 25 17 chrX 154911158 154911277 -22062863 - FLAM_C SINE Alu 0 143 24 305 105 0 0 chrX 154911329 154911367 -22062773 - FLAM_C SINE Alu -92 42 5 272 303 45 28 chrX 154911381 154911443 -22062697 - L1MC4a LINE L1 -1215 6593 6534 1904 143 0 25 chrX 154911443 154911758 -22062382 - AluJo SINE Alu -5 307 1 272 303 45 28 chrX 154911758 154911873 -22062267 - L1MC4a LINE L1 -1274 6534 6413 869 218 0 0 chrX 154911877 154912033 -22062107 + AluJo SINE Alu 117 272 -40 4968 126 30 38 chrX 154912103 154912610 -22061530 - Tigger1 DNA MER2_type -1617 801 291 2135 107 10 7 chrX 154912610 154912920 -22061220 - AluSx SINE Alu -1 311 1 4968 126 30 38 chrX 154912920 154912932 -22061208 - Tigger1 DNA MER2_type -2127 291 280 2237 92 0 3 chrX 154912932 154913237 -22060903 - AluSx SINE Alu -8 304 1 4968 126 30 38 chrX 154913237 154913524 -22060616 - Tigger1 DNA MER2_type -2138 280 1 1157 222 114 41 chrX 154913524 154913619 -22060521 + L1ME LINE L1 3785 3872 -2274 1985 128 10 0 chrX 154913619 154913923 -22060217 + AluSx SINE Alu 1 307 -5 1157 222 114 41 chrX 154913923 154914589 -22059551 + L1ME LINE L1 3872 4488 -1658 1942 137 7 0 chrX 154914589 154914889 -22059251 + AluSx SINE Alu 1 302 -10 1157 222 114 41 chrX 154914889 154915102 -22059038 + L1ME LINE L1 4488 4684 -1462 1986 182 59 37 chrX 154915102 154915155 -22058985 - MLT1C LTR MaLR -2 465 415 1856 122 25 7 chrX 154915155 154915441 -22058699 + AluSx SINE Alu 1 291 -21 1986 182 59 37 chrX 154915441 154915842 -22058298 - MLT1C LTR MaLR -52 415 1 1157 222 114 41 chrX 154915842 154915967 -22058173 + L1ME LINE L1 4684 4798 -1348 2136 111 0 0 chrX 154915967 154916256 -22057884 - AluSx SINE Alu -23 289 1 1157 222 114 41 chrX 154916256 154916375 -22057765 + L1ME LINE L1 4798 5204 -942 725 183 0 29 chrX 154916377 154916514 -22057626 + FLAM_A SINE Alu 1 133 0 1715 142 7 30 chrX 154916534 154916837 -22057303 + AluJb SINE Alu 1 296 -16 325 206 184 28 chrX 154916844 154916985 -22057155 + L1ME LINE L1 5183 5345 -801 1699 126 0 32 chrX 154916986 154917264 -22056876 - AluJo SINE Alu -14 298 30 226 267 187 0 chrX 154917806 154917881 -22056259 + MER5A DNA MER1_type 29 117 -72 318 26 0 0 chrX 154917928 154917967 -22056173 + (GTCTG)n Simple_repeat Simple_repeat 1 39 0 535 245 148 10 chrX 154918321 154918619 -22055521 - L2 LINE L2 -1443 1871 1533 902 237 95 35 chrX 154918754 154919092 -22055048 - MLT1C LTR MaLR -66 401 44 2161 105 0 3 chrX 154919568 154919874 -22054266 - AluSq SINE Alu -8 305 1 2202 103 0 0 chrX 154919906 154920208 -22053932 + AluSx SINE Alu 1 302 -10 836 268 239 57 chrX 154920337 154922332 -22051808 + L2 LINE L2 887 3267 -46 23 33 0 0 chrX 154923442 154923472 -22050668 + AT_rich Low_complexity Low_complexity 1 30 0 328 209 15 0 chrX 154924566 154924633 -22049507 - MLT1J LTR MaLR -443 68 1 362 245 137 100 chrX 154924784 154925025 -22049115 + LTR67 LTR ERVL 300 549 -8 309 296 38 30 chrX 154925079 154925211 -22048929 + MIR SINE MIR 8 140 -122 406 266 44 6 chrX 154925590 154925767 -22048373 + L1ME LINE L1 5321 5503 -671 761 292 101 55 chrX 154926132 154926433 -22047707 - L1MCa LINE L1 -2734 3692 3406 207 0 0 0 chrX 154926433 154926456 -22047684 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1906 125 3 7 chrX 154926458 154926754 -22047386 - AluSx SINE Alu -17 295 1 761 292 101 55 chrX 154926754 154927031 -22047109 - L1MCa LINE L1 -3020 3406 3143 2178 91 7 0 chrX 154927031 154927329 -22046811 + AluSq SINE Alu 11 310 -3 761 292 101 55 chrX 154927329 154927716 -22046424 - L1MCa LINE L1 -3283 3143 2678 30 0 0 0 chrX 154927733 154927763 -22046377 + AT_rich Low_complexity Low_complexity 1 30 0 1973 142 0 3 chrX 154927763 154928074 -22046066 - AluJb SINE Alu -2 310 1 2134 92 7 3 chrX 154928154 154928448 -22045692 - AluSq SINE Alu -18 295 1 2400 41 0 50 chrX 154928458 154928777 -22045363 - AluY SINE Alu -8 303 1 321 273 72 29 chrX 154928801 154928940 -22045200 - L1MCa LINE L1 -3976 2450 2306 418 86 129 0 chrX 154928943 154929013 -22045127 - L1MB3 LINE L1 -7 6176 6098 735 218 21 0 chrX 154929021 154929192 -22044948 + AluJb SINE Alu 137 310 0 1823 185 35 16 chrX 154929266 154929633 -22044507 + MLT1A2 LTR MaLR 1 374 0 2194 93 3 0 chrX 154929733 154930024 -22044116 + AluSp SINE Alu 1 292 -21 2258 88 0 0 chrX 154930032 154930337 -22043803 + AluSg SINE Alu 1 305 -5 198 319 76 28 chrX 154932456 154932600 -22041540 + L2 LINE L2 748 898 -2416 283 359 80 4 chrX 154932633 154932895 -22041245 + L2 LINE L2 1628 1909 -1405 842 271 29 0 chrX 154933088 154933298 -22040842 + MER58A DNA MER1_type 1 216 -8 566 230 18 81 chrX 154933454 154933608 -22040532 + LTR67 LTR ERVL 348 485 -72 632 181 31 0 chrX 154933608 154933735 -22040405 - L1MB3 LINE L1 -7 6176 6046 566 230 18 81 chrX 154933735 154933802 -22040338 + LTR67 LTR ERVL 485 555 -2 209 280 27 0 chrX 154933806 154933881 -22040259 + L2 LINE L2 2040 2116 -1198 287 95 0 0 chrX 154933943 154933985 -22040155 + L2 LINE L2 2254 2295 -1019 291 214 68 58 chrX 154934204 154934307 -22039833 + LTR16A LTR ERVL 119 222 -228 621 237 85 66 chrX 154934419 154934468 -22039672 + L2 LINE L2 2650 2697 -616 1951 141 3 3 chrX 154934468 154934767 -22039373 - AluJo SINE Alu -13 299 1 621 237 85 66 chrX 154934767 154934860 -22039280 + L2 LINE L2 2697 2787 -526 764 205 106 0 chrX 154934860 154935021 -22039119 + MER45A DNA AcHobo 1 178 0 621 237 85 66 chrX 154935021 154935313 -22038827 + L2 LINE L2 2787 3091 -222 1040 233 78 24 chrX 154935362 154935735 -22038405 - HAL1b LINE L1 -941 407 15 423 0 0 0 chrX 154936845 154936892 -22037248 + (CA)n Simple_repeat Simple_repeat 1 47 0 2217 74 0 17 chrX 154936961 154937260 -22036880 - AluSg SINE Alu -16 294 1 598 122 149 19 chrX 154938470 154938577 -22035563 + FLAM_A SINE Alu 4 124 -9 751 156 78 0 chrX 154938600 154938741 -22035399 - BC200 scRNA scRNA -41 159 8 979 186 177 0 chrX 154938803 154939029 -22035111 + L1MB5 LINE L1 5909 6174 0 368 108 40 14 chrX 154939384 154939458 -22034682 - L1MB8 LINE L1 -15 6163 6088 2746 191 21 25 chrX 154939483 154939944 -22034196 - L1MB5 LINE L1 -46 6128 5668 2154 105 0 19 chrX 154939944 154940258 -22033882 - AluSx SINE Alu -3 309 2 2746 191 21 25 chrX 154940258 154940361 -22033779 - L1MB5 LINE L1 -506 5668 5566 1080 86 26 0 chrX 154941760 154941911 -22032229 - AluSg SINE Alu -155 155 1 433 288 261 13 chrX 154942093 154942545 -22031595 - L1MC4 LINE L1 -153 7889 7326 1930 136 3 10 chrX 154943157 154943458 -22030682 - AluSx SINE Alu -13 299 1 228 378 25 17 chrX 154943944 154944063 -22030077 + MIR3 SINE MIR 86 205 -3 2277 103 0 3 chrX 154944158 154944469 -22029671 - AluSx SINE Alu -1 311 2 1755 156 40 7 chrX 154944683 154944985 -22029155 - L1PB4 LINE L1 -1 6155 5844 2185 88 0 26 chrX 154945237 154945545 -22028595 + AluSx SINE Alu 1 300 -12 289 73 0 207 chrX 154945553 154945605 -22028535 + L1MB4 LINE L1 6115 6176 -4 402 21 0 0 chrX 154945605 154945652 -22028488 + (TA)n Simple_repeat Simple_repeat 1 47 0 1750 131 3 52 chrX 154945652 154945957 -22028183 - AluJb SINE Alu -22 290 1 289 73 0 207 chrX 154945957 154945985 -22028155 + L1MB4 LINE L1 6174 6179 -1 1708 112 108 4 chrX 154946147 154946424 -22027716 - AluSx SINE Alu -6 306 1 290 250 241 18 chrX 154946427 154946651 -22027489 + L2 LINE L2 2388 2661 -653 770 179 0 121 chrX 154946866 154946907 -22027233 - AluJo SINE Alu 0 312 268 1904 107 57 0 chrX 154946907 154947187 -22026953 + AluSq SINE Alu 1 296 -17 770 179 0 121 chrX 154947187 154947368 -22026772 - AluJo SINE Alu -44 268 117 414 226 194 7 chrX 154947405 154947560 -22026580 - L1MC4a LINE L1 -1639 6169 5986 821 288 41 7 chrX 154947569 154947864 -22026276 - L1MC4a LINE L1 -1872 5936 5632 2073 99 44 0 chrX 154948261 154948555 -22025585 + AluSx SINE Alu 1 307 -5 346 307 73 22 chrX 154949626 154949763 -22024377 - MIR SINE MIR -118 144 1 21 0 0 0 chrX 154952526 154952547 -22021593 + AT_rich Low_complexity Low_complexity 1 21 0 200 200 21 84 chrX 154953639 154953734 -22020406 + CT-rich Low_complexity Low_complexity 1 89 0 204 97 0 0 chrX 154958035 154958066 -22016074 + (A)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chrX 154962746 154962787 -22011353 + GC_rich Low_complexity Low_complexity 1 41 0 42 92 0 0 chrX 154962906 154963025 -22011115 + GC_rich Low_complexity Low_complexity 1 119 0 22 56 0 0 chrX 154963121 154963157 -22010983 + GC_rich Low_complexity Low_complexity 1 36 0 2325 112 0 0 chrX 154964966 154965278 -22008862 - AluSx SINE Alu 0 312 1 283 253 20 50 chrX 154965584 154965683 -22008457 - MIR SINE MIR -60 148 53 317 316 79 0 chrX 154966463 154966602 -22007538 + MER69A DNA AcHobo 28 177 0 309 235 153 10 chrX 154967206 154967304 -22006836 + MIR SINE MIR 30 141 -67 180 283 0 0 chrX 154967662 154967708 -22006432 + L2 LINE L2 2923 2968 -346 354 327 35 0 chrX 154967921 154968034 -22006106 + L2 LINE L2 3182 3298 -15 1221 159 150 0 chrX 154968043 154968263 -22005877 + AluJo SINE Alu 39 291 -21 690 138 28 0 chrX 154968290 154968399 -22005741 + FLAM_C SINE Alu 6 117 -26 189 0 0 0 chrX 154968399 154968420 -22005720 + (T)n Simple_repeat Simple_repeat 1 21 0 885 201 11 0 chrX 154970579 154970753 -22003387 + AluJb SINE Alu 134 309 -3 1895 141 0 17 chrX 154971402 154971700 -22002440 + AluJb SINE Alu 1 293 -19 242 196 101 88 chrX 154972413 154972513 -22001627 - L1M4 LINE L1 -1715 4431 4327 2158 128 0 0 chrX 154972513 154972819 -22001321 + AluJb SINE Alu 2 307 -5 242 196 101 88 chrX 154972819 154972866 -22001274 - L1M4 LINE L1 -1819 4327 4282 2268 91 3 7 chrX 154972867 154973174 -22000966 - AluSq SINE Alu -7 306 1 2219 107 0 0 chrX 154973189 154973487 -22000653 - AluSq SINE Alu -15 298 1 2242 103 0 16 chrX 154973487 154973797 -22000343 - AluSx SINE Alu -6 306 1 421 216 216 0 chrX 154973799 154973989 -22000151 - L1MEc LINE L1 -4073 2323 2093 350 325 75 6 chrX 154973991 154974151 -21999989 - L1MEc LINE L1 -6102 294 124 616 316 196 34 chrX 154974227 154974288 -21999852 + L2 LINE L2 1601 1651 -1663 2349 92 7 0 chrX 154974288 154974594 -21999546 - AluSx SINE Alu -4 308 1 616 316 196 34 chrX 154974594 154975276 -21998864 + L2 LINE L2 1651 2465 -849 303 264 9 28 chrX 154975296 154975402 -21998738 - L1ME3 LINE L1 -10 6152 6049 422 299 39 0 chrX 154975407 154975561 -21998579 - MLT1G1 LTR MaLR 0 595 436 230 366 47 16 chrX 154975644 154975835 -21998305 - MLT1F1 LTR MaLR -342 225 29 507 282 114 20 chrX 154975844 154975907 -21998233 - L1ME3 LINE L1 -191 5971 5915 2100 147 141 0 chrX 154975907 154976282 -21997858 + MSTA LTR MaLR 1 428 0 507 282 114 20 chrX 154976282 154976516 -21997624 - L1ME3 LINE L1 -247 5915 5646 929 142 0 0 chrX 154976654 154976795 -21997345 - AluJo SINE Alu -171 141 1 351 155 165 0 chrX 154976808 154976905 -21997235 + L1MA10 LINE L1 6215 6327 -7 2389 76 7 0 chrX 154976907 154977210 -21996930 + AluY SINE Alu 1 305 -6 2319 60 0 0 chrX 154977232 154977539 -21996601 + AluY SINE Alu 1 307 0 2049 148 7 0 chrX 154977541 154977879 -21996261 + AluSx SINE Alu 1 340 0 398 184 0 0 chrX 154978000 154978076 -21996064 - L1MB4 LINE L1 0 6180 6105 311 282 68 34 chrX 154978151 154978268 -21995872 - L1MEc LINE L1 -4151 2245 2125 1488 177 28 7 chrX 154978730 154979012 -21995128 - AluJo SINE Alu -24 288 1 1363 210 23 34 chrX 154979025 154979169 -21994971 - L1MB7 LINE L1 -9 6175 6031 2133 105 0 0 chrX 154979169 154979505 -21994635 + AluSx SINE Alu 1 336 0 1363 210 23 34 chrX 154979505 154979712 -21994428 - L1MB7 LINE L1 -153 6031 5827 2183 99 3 0 chrX 154979716 154980009 -21994131 - AluSx SINE Alu -14 298 5 198 0 0 0 chrX 154980671 154980693 -21993447 + (A)n Simple_repeat Simple_repeat 1 22 0 2034 107 4 4 chrX 154981041 154981322 -21992818 - AluJb SINE Alu -31 281 1 400 301 49 16 chrX 154981357 154981480 -21992660 + L1M4 LINE L1 3324 3450 -2696 1932 101 63 11 chrX 154981484 154981771 -21992369 + AluSx SINE Alu 2 303 -9 1810 88 0 0 chrX 154981790 154982030 -21992110 + AluSg1 SINE Alu 58 297 -12 2190 82 14 0 chrX 154982030 154982321 -21991819 + AluSp SINE Alu 1 296 -17 459 86 0 0 chrX 154982694 154982764 -21991376 + MER41B LTR ERV1 482 551 -84 616 167 0 0 chrX 154982829 154982937 -21991203 - MER110 LTR ERV1 0 491 384 274 246 136 25 chrX 154983064 154983182 -21990958 - MER110 LTR ERV1 -338 153 23 675 188 30 23 chrX 154983462 154983595 -21990545 + AluJo SINE Alu 5 138 -174 2202 125 0 0 chrX 154983627 154983938 -21990202 + AluSx SINE Alu 1 311 -1 2385 94 0 0 chrX 154983956 154984265 -21989875 + AluSc SINE Alu 1 309 0 371 349 33 47 chrX 154984587 154984799 -21989341 - L1M4 LINE L1 -1922 4224 4016 1821 112 9 81 chrX 154984841 154985162 -21988978 - AluSq SINE Alu -13 300 3 1031 96 0 0 chrX 154985163 154985299 -21988841 - AluSq/x SINE Alu -177 136 1 732 202 8 0 chrX 154985304 154985428 -21988712 + AluJb SINE Alu 170 294 -18 3443 162 60 25 chrX 154985432 154986197 -21987943 + L1MA8 LINE L1 5321 6112 -179 1432 146 82 17 chrX 154986243 154986571 -21987569 - MER4A LTR ERV1 0 664 257 438 146 0 12 chrX 154986567 154986649 -21987491 - MER4A LTR ERV1 -566 98 18 * 1737 142 24 3 chrX 154986649 154986938 -21987202 - AluJo SINE Alu -17 295 1 261 346 40 10 chrX 154987091 154987192 -21986948 - L2 LINE L2 -26 3287 3184 2311 59 0 0 chrX 154987259 154987549 -21986591 - AluY SINE Alu -16 295 6 1624 158 3 27 chrX 154987717 154988009 -21986131 + AluJb SINE Alu 1 285 -27 1200 99 0 0 chrX 154988009 154988210 -21985930 + (CA)n Simple_repeat Simple_repeat 1 201 0 422 310 152 0 chrX 154988511 154988708 -21985432 + L1ME LINE L1 5377 5603 -561 2502 61 0 0 chrX 154988782 154989093 -21985047 + AluY SINE Alu 1 311 0 226 294 0 0 chrX 154989094 154989179 -21984961 - L1M4 LINE L1 -3599 2547 2463 517 270 56 6 chrX 154989202 154989380 -21984760 - L1M4 LINE L1 -3776 2370 2184 1087 184 9 18 chrX 154989686 154989903 -21984237 + L1MB3 LINE L1 5967 6181 -2 1348 148 48 139 chrX 154989908 154990240 -21983900 + AluJo SINE Alu 1 302 0 466 248 38 13 chrX 154990519 154990676 -21983464 - LTR23 LTR ERV1 -1 436 276 1616 180 13 28 chrX 154990676 154990813 -21983327 + AluJb SINE Alu 1 139 -173 1958 110 7 10 chrX 154990813 154991158 -21982982 + AluSq SINE Alu 1 313 0 1616 180 13 28 chrX 154991158 154991518 -21982622 + AluJb SINE Alu 139 312 0 415 340 135 12 chrX 154991519 154991778 -21982362 + HAL1 LINE L1 1011 1301 -1206 2175 84 7 7 chrX 154991798 154992094 -21982046 + AluY SINE Alu 1 296 -15 1490 197 110 3 chrX 154992096 154992486 -21981654 - L1MB2 LINE L1 -160 6011 5580 1962 124 0 0 chrX 154992763 154993092 -21981048 + AluSx SINE Alu 1 329 0 648 169 0 76 chrX 154993335 154993507 -21980633 + L1PA13 LINE L1 6004 6162 -1 1274 115 0 0 chrX 154993508 154993691 -21980449 + AluSg/x SINE Alu 128 310 0 24 85 0 0 chrX 154994166 154994225 -21979915 + AT_rich Low_complexity Low_complexity 1 59 0 560 157 0 0 chrX 154994392 154994475 -21979665 + AluJ/FLAM SINE Alu 1 83 -229 462 167 217 25 chrX 154994488 154994608 -21979532 + AluJo SINE Alu 1 143 -169 2207 62 34 14 chrX 154994611 154994903 -21979237 + AluSg SINE Alu 1 298 -12 204 40 0 0 chrX 154994953 154994978 -21979162 + (T)n Simple_repeat Simple_repeat 1 25 0 2229 110 10 0 chrX 154994994 154995303 -21978837 + AluSp SINE Alu 1 312 -1 1016 147 0 0 chrX 154995304 154995460 -21978680 + AluJo SINE Alu 132 287 -25 288 323 104 10 chrX 154995519 154995711 -21978429 + L1M1 LINE L1 5433 5642 -661 1730 159 0 36 chrX 154995835 154996143 -21977997 - AluJo SINE Alu -15 297 1 2227 107 0 0 chrX 154996151 154996450 -21977690 - AluSx SINE Alu -13 299 1 2313 81 0 3 chrX 154996476 154996773 -21977367 - AluSq SINE Alu -17 296 1 456 279 115 12 chrX 154996864 154997029 -21977111 + MIR3 SINE MIR 5 186 -22 434 212 61 30 chrX 154997517 154997649 -21976491 + MER53 DNA DNA 2 137 -52 2254 82 7 0 chrX 154998628 154998919 -21975221 + AluSx SINE Alu 1 293 -19 302 244 146 0 chrX 155001769 155001851 -21972289 + MIR SINE MIR 33 126 -136 2202 104 0 3 chrX 155001858 155002156 -21971984 - AluSx SINE Alu -15 297 1 467 276 109 17 chrX 155002184 155002358 -21971782 - MIR3 SINE MIR -14 194 5 921 130 12 37 chrX 155002422 155002583 -21971557 - AluJb SINE Alu -22 290 134 1674 112 48 31 chrX 155002583 155002755 -21971385 - AluSx SINE Alu -13 299 118 2409 53 3 7 chrX 155002755 155003057 -21971083 + AluY SINE Alu 1 301 -10 1674 112 48 31 chrX 155003057 155003178 -21970962 - AluSx SINE Alu -194 118 1 272 242 0 0 chrX 155003209 155003271 -21970869 + Tigger5 DNA MER2_type 2262 2323 0 1545 112 88 88 chrX 155003272 155003567 -21970573 + AluJo SINE Alu 1 295 -17 2316 75 0 47 chrX 155003567 155003704 -21970436 + AluSq SINE Alu 2 144 -169 2166 91 3 7 chrX 155003704 155004039 -21970101 + AluSx SINE Alu 1 334 0 2316 75 0 47 chrX 155004039 155004222 -21969918 + AluSq SINE Alu 144 308 -5 2225 102 3 0 chrX 155004224 155004518 -21969622 + AluSx SINE Alu 1 295 -17 1999 110 24 7 chrX 155004564 155004856 -21969284 - AluSg SINE Alu -13 297 1 2022 85 16 39 chrX 155004858 155005163 -21968977 - AluSq SINE Alu -15 298 1 1980 126 10 0 chrX 155005165 155005459 -21968681 - AluSx SINE Alu -15 297 1 2302 193 14 35 chrX 155005472 155005904 -21968236 - L1MA5 LINE L1 -35 6265 5825 1781 179 10 3 chrX 155005904 155006212 -21967928 - AluJo SINE Alu -2 310 1 2302 193 14 35 chrX 155006212 155006224 -21967916 - L1MA5 LINE L1 -475 5825 5814 2185 108 0 25 chrX 155006224 155006540 -21967600 - AluSx SINE Alu -1 311 4 2302 193 14 35 chrX 155006540 155006665 -21967475 - L1MA5 LINE L1 -486 5814 5707 1486 185 39 24 chrX 155006663 155006853 -21967287 + L1 LINE L1 4862 5048 -1098 * 2225 104 0 3 chrX 155006853 155007160 -21966980 + AluSx SINE Alu 7 312 0 1992 124 3 0 chrX 155007162 155007493 -21966647 + AluSx SINE Alu 1 312 0 1486 185 39 24 chrX 155007493 155007682 -21966458 + L1 LINE L1 5048 5250 -896 243 0 0 0 chrX 155009080 155009107 -21965033 + (TG)n Simple_repeat Simple_repeat 2 28 0 1347 132 177 0 chrX 155009107 155009350 -21964790 - AluJo SINE Alu -26 286 1 528 297 26 0 chrX 155009461 155009656 -21964484 - Charlie4a DNA MER1_type -62 446 247 234 0 0 0 chrX 155009826 155009852 -21964288 + (CCG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chrX 155010171 155010214 -21963926 + GC_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chrX 155010224 155010266 -21963874 + GC_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chrX 155010339 155010380 -21963760 + GC_rich Low_complexity Low_complexity 1 41 0 524 180 0 48 chrX 155012177 155012366 -21961774 + CT-rich Low_complexity Low_complexity 1 180 0 198 0 0 0 chrX 155012558 155012580 -21961560 + (CTGGGG)n Simple_repeat Simple_repeat 6 27 0 180 0 0 0 chrX 155012614 155012634 -21961506 + (TCCC)n Simple_repeat Simple_repeat 4 23 0 491 266 7 29 chrX 155014670 155014809 -21959331 - MIR3 SINE MIR -12 196 61 231 332 66 46 chrX 155014946 155015142 -21958998 + L2 LINE L2 2906 3105 -167 273 286 103 8 chrX 155015577 155015703 -21958437 + L3 LINE CR1 1221 1358 -219 1154 217 0 9 chrX 155016552 155016782 -21957358 - AluJo SINE Alu 0 312 85 201 263 18 0 chrX 155020202 155020259 -21953881 + L2 LINE L2 3191 3248 -24 180 125 0 0 chrX 155027650 155027682 -21946458 + (CCA)n Simple_repeat Simple_repeat 1 32 0 320 326 96 34 chrX 155034144 155034322 -21939818 - L1 LINE L1 -2808 3338 3150 1930 119 6 48 chrX 155037051 155037363 -21936777 + AluSg SINE Alu 1 299 -11 1757 115 100 0 chrX 155037438 155037734 -21936406 + AluJb SINE Alu 1 323 0 2290 103 0 3 chrX 155040250 155040562 -21933578 + AluSx SINE Alu 1 311 -1 4189 58 35 22 chrX 155041442 155041620 -21932520 - MER41A LTR ERV1 0 554 380 2502 62 3 0 chrX 155041620 155041929 -21932211 - AluSp SINE Alu -3 310 1 4189 58 35 22 chrX 155041929 155042297 -21931843 - MER41A LTR ERV1 -174 380 1 220 275 33 44 chrX 155043308 155043399 -21930741 - L2 LINE L2 -1011 2303 2214 1803 137 20 24 chrX 155043401 155043693 -21930447 + AluJo SINE Alu 2 292 -20 2469 77 0 0 chrX 155043693 155044004 -21930136 + AluSq SINE Alu 1 311 -2 254 244 191 8 chrX 155044039 155044170 -21929970 - L2 LINE L2 -1209 2105 1951 1085 224 18 14 chrX 155044368 155044645 -21929495 + Charlie4a DNA MER1_type 39 316 -192 2163 97 0 50 chrX 155044756 155044892 -21929248 + AluSq SINE Alu 1 142 -171 1609 108 126 18 chrX 155044892 155045170 -21928970 + AluSg SINE Alu 1 308 -2 2163 97 0 50 chrX 155045170 155045353 -21928787 + AluSq SINE Alu 142 304 -9 1826 120 21 18 chrX 155045542 155045872 -21928268 - AluJb SINE Alu 0 331 1 2523 52 3 0 chrX 155046251 155046561 -21927579 - AluY SINE Alu 0 311 1 2091 84 3 14 chrX 155046619 155046939 -21927201 - AluSx SINE Alu 0 317 1 238 292 10 42 chrX 155047076 155047172 -21926968 + MIR SINE MIR 8 100 -162 279 54 0 0 chrX 155047446 155047483 -21926657 + (CCCCCG)n Simple_repeat Simple_repeat 5 41 0 211 184 0 79 chrX 155047602 155047678 -21926462 + (CCCCG)n Simple_repeat Simple_repeat 2 71 0 22 0 0 0 chrX 155048058 155048080 -21926060 + GC_rich Low_complexity Low_complexity 1 22 0 1897 191 66 26 chrX 155048902 155049085 -21925055 - L1MC2 LINE L1 0 6344 6170 220 69 0 0 chrX 155049085 155049114 -21925026 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2056 105 0 7 chrX 155049114 155049399 -21924741 - AluSx SINE Alu -1 311 1 1897 191 66 26 chrX 155049399 155049716 -21924424 - L1MC2 LINE L1 -173 6171 5823 1750 164 13 13 chrX 155049716 155050015 -21924125 - AluJb SINE Alu -12 300 2 187 321 36 0 chrX 155053250 155053306 -21920834 + L2 LINE L2 2263 2320 -994 707 183 32 21 chrX 155053464 155053650 -21920490 - L1MC2 LINE L1 -110 6234 6047 1816 115 39 4 chrX 155053668 155053947 -21920193 + AluJb SINE Alu 5 293 -19 276 100 0 0 chrX 155053947 155053987 -21920153 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 22 88 0 0 chrX 155056431 155056488 -21917652 + GC_rich Low_complexity Low_complexity 1 57 0 213 200 0 0 chrX 155056831 155056871 -21917269 + CT-rich Low_complexity Low_complexity 3 42 0 343 183 28 14 chrX 155057387 155057458 -21916682 - MIR SINE MIR -56 152 81 269 277 33 92 chrX 155058208 155058392 -21915748 - L2 LINE L2 -95 3177 3005 2291 74 20 3 chrX 155058708 155059007 -21915133 + AluSx SINE Alu 1 304 -8 362 324 127 37 chrX 155059787 155060031 -21914109 + L2 LINE L2 3043 3308 -5 2253 109 0 0 chrX 155062701 155063004 -21911136 + AluSg SINE Alu 1 303 -7 620 271 11 11 chrX 155064553 155064741 -21909399 - HAL1 LINE L1 -289 2218 2031 233 253 101 10 chrX 155064879 155064978 -21909162 - HAL1 LINE L1 -714 1793 1686 1566 156 43 18 chrX 155065006 155065310 -21908830 - AluJb SINE Alu 0 311 1 358 307 60 78 chrX 155065317 155065362 -21908778 - HAL1 LINE L1 -1485 1022 978 2049 86 3 89 chrX 155065362 155065547 -21908593 - AluSq SINE Alu -17 296 149 2279 98 0 0 chrX 155065547 155065852 -21908288 - AluSx SINE Alu -7 305 1 2049 86 3 89 chrX 155065852 155065990 -21908150 - AluSq SINE Alu -164 149 1 358 307 60 78 chrX 155065990 155066162 -21907978 - HAL1 LINE L1 -1529 978 809 253 277 36 0 chrX 155066175 155066258 -21907882 - HAL1 LINE L1 -1796 711 626 1777 227 84 2 chrX 155066320 155066844 -21907296 - MER90 LTR ERV1 -2 612 4 275 282 26 0 chrX 155066849 155066927 -21907213 - HAL1 LINE L1 -1995 512 433 1101 140 0 17 chrX 155066985 155067163 -21906977 - AluJ SINE Alu -16 296 122 971 87 0 0 chrX 155067224 155067351 -21906789 - AluJ SINE Alu -173 139 13 1418 216 31 17 chrX 155067381 155067737 -21906403 - L1MB3 LINE L1 -10 6173 5813 2022 109 0 3 chrX 155068064 155068372 -21905768 - AluSx SINE Alu 0 307 1 773 205 105 22 chrX 155068381 155068696 -21905444 - L1MB7 LINE L1 -2 6182 5753 1081 136 19 0 chrX 155070146 155070308 -21903832 + AluSg/x SINE Alu 131 295 -17 419 302 36 11 chrX 155070313 155070492 -21903648 - L1MC4 LINE L1 -1139 6703 6526 943 193 83 34 chrX 155070950 155071214 -21902926 + MER67C LTR ERV1 1 277 -433 946 104 12 6 chrX 155071492 155071655 -21902485 - MER67C LTR ERV1 0 710 547 283 336 13 13 chrX 155072098 155072247 -21901893 + L1 LINE L1 4944 5092 -1054 307 329 55 0 chrX 155072422 155072568 -21901572 - L1M4 LINE L1 -2191 3955 3802 850 351 83 46 chrX 155072600 155072907 -21901233 - L1M4 LINE L1 -2338 3808 3514 1770 169 0 20 chrX 155072907 155073208 -21900932 - AluJo SINE Alu -17 295 1 850 351 83 46 chrX 155073208 155073645 -21900495 - L1M4 LINE L1 -2632 3514 2844 301 190 17 0 chrX 155073629 155073687 -21900453 - L1MC4 LINE L1 0 8042 7984 * 1753 155 18 15 chrX 155073699 155074040 -21900100 + L1MB7 LINE L1 5795 6136 -48 2446 59 16 0 chrX 155074050 155074354 -21899786 - AluSx SINE Alu -3 309 1 268 321 159 20 chrX 155074480 155074515 -21899625 + L1MB4 LINE L1 3409 3438 -2708 2466 62 0 16 chrX 155074515 155074823 -21899317 + AluSx SINE Alu 1 303 -9 268 321 159 20 chrX 155074823 155075083 -21899057 + L1MB4 LINE L1 3438 3745 -2401 1038 303 30 40 chrX 155076004 155076122 -21898018 + L1MB4 LINE L1 3736 3854 -2292 2101 55 80 0 chrX 155076122 155076396 -21897744 - AluY SINE Alu -15 296 1 1038 303 30 40 chrX 155076396 155076590 -21897550 + L1MB4 LINE L1 3854 4048 -2098 2337 73 13 16 chrX 155076590 155076903 -21897237 - AluSx SINE Alu 0 312 1 1038 303 30 40 chrX 155076903 155077286 -21896854 + L1MB4 LINE L1 4048 4425 -1721 1010 168 0 25 chrX 155077286 155077482 -21896658 + AluJo SINE Alu 122 312 0 715 263 97 13 chrX 155077486 155077859 -21896281 + L1MB4 LINE L1 4462 4865 -1281 1141 154 65 37 chrX 155077859 155078073 -21896067 + AluJb SINE Alu 86 305 -7 799 283 51 28 chrX 155078086 155078358 -21895782 + L1MB4 LINE L1 4860 5124 -1046 1678 152 72 0 chrX 155078358 155078648 -21895492 + AluJo SINE Alu 1 311 -1 799 283 51 28 chrX 155078648 155078997 -21895143 + L1MB4 LINE L1 5124 5496 -674 699 158 17 0 chrX 155078998 155079118 -21895022 + AluSg/x SINE Alu 179 300 -9 360 285 62 8 chrX 155079126 155079309 -21894831 + L1MB4 LINE L1 5516 5712 -458 1982 94 4 0 chrX 155079309 155079574 -21894566 - AluSq SINE Alu -10 303 38 463 277 14 62 chrX 155079575 155079642 -21894498 + L1ME3 LINE L1 5672 5741 -421 1531 160 0 70 chrX 155079642 155079954 -21894186 + AluJo SINE Alu 1 290 -22 463 277 14 62 chrX 155079954 155080175 -21893965 + L1ME3 LINE L1 5741 5946 -216 * 1742 190 31 51 chrX 155079962 155080414 -21893726 + L1MB4 LINE L1 5732 6174 -6 1307 171 0 25 chrX 155080418 155080658 -21893482 - AluJo SINE Alu -1 311 78 2211 99 0 6 chrX 155080828 155081140 -21893000 - AluSg SINE Alu 0 310 1 1774 115 68 14 chrX 155081147 155081425 -21892715 - AluSx SINE Alu -19 293 1 2106 102 0 3 chrX 155081613 155081920 -21892220 + AluSx SINE Alu 1 306 0 461 196 21 0 chrX 155081936 155082033 -21892107 + L1M4 LINE L1 4861 4959 -1187 1230 232 24 30 chrX 155082039 155082336 -21891804 + MLT1A1 LTR MaLR 1 295 -70 446 262 27 7 chrX 155082351 155082500 -21891640 + L1M4 LINE L1 4964 5115 -1031 1148 228 72 42 chrX 155082770 155082893 -21891247 - MER2 DNA MER2_type 0 344 226 2554 55 0 0 chrX 155082893 155083201 -21890939 + AluY SINE Alu 1 308 -3 1148 228 72 42 chrX 155083201 155083411 -21890729 - MER2 DNA MER2_type -118 226 1 1020 167 6 0 chrX 155083993 155084167 -21889973 - FRAM SINE Alu -6 170 1 759 328 14 29 chrX 155084174 155084522 -21889618 + ERVL LTR ERVL 3097 3439 -2325 937 319 93 18 chrX 155084707 155085277 -21888863 + ERVL LTR ERVL 3693 4305 -1349 262 111 0 37 chrX 155085785 155085839 -21888301 + (TTTC)n Simple_repeat Simple_repeat 3 54 0 365 203 20 47 chrX 155086116 155086264 -21887876 + C-rich Low_complexity Low_complexity 1 144 0 78 96 0 0 chrX 155086353 155086592 -21887548 + GC_rich Low_complexity Low_complexity 1 239 0 27 49 0 0 chrX 155086954 155086995 -21887145 + GC_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chrX 155087964 155087986 -21886154 + (CGGGGG)n Simple_repeat Simple_repeat 3 24 0 2161 190 74 10 chrX 155089307 155089427 -21884713 - L1MB7 LINE L1 -1 6183 6064 1532 249 139 16 chrX 155089427 155090069 -21884071 - L1MC4 LINE L1 -1985 6057 5337 * 2794 209 92 36 chrX 155090059 155090478 -21883662 - L1MC4 LINE L1 -1352 4794 4400 2057 125 0 10 chrX 155090478 155090773 -21883367 + AluSx SINE Alu 1 292 -20 2794 209 92 36 chrX 155090773 155090943 -21883197 - L1MC4 LINE L1 -1746 4400 4241 2189 128 0 3 chrX 155090943 155091256 -21882884 - AluSx SINE Alu 0 312 1 2794 209 92 36 chrX 155091256 155091550 -21882590 - L1MC4 LINE L1 -1905 4241 3861 2263 71 3 0 chrX 155092167 155092473 -21881667 - AluSp SINE Alu 0 307 1 288 221 231 0 chrX 155093006 155093110 -21881030 + L1ME1 LINE L1 5947 6074 -92 * 319 338 26 7 chrX 155093051 155093205 -21880935 + L1MA10 LINE L1 6175 6331 -3 350 248 16 85 chrX 155093320 155093449 -21880691 + MIR SINE MIR 69 188 -74 1962 109 19 56 chrX 155093538 155093672 -21880468 + AluSg SINE Alu 1 138 -172 2161 84 28 0 chrX 155093672 155093956 -21880184 + AluSp SINE Alu 1 292 -21 1962 109 19 56 chrX 155093956 155094143 -21879997 + AluSg SINE Alu 138 310 0 1198 188 14 0 chrX 155094299 155094522 -21879618 + AluJo SINE Alu 86 311 -1 348 83 0 0 chrX 155094522 155094570 -21879570 + (GA)n Simple_repeat Simple_repeat 1 48 0 2331 80 10 0 chrX 155094983 155095282 -21878858 - AluSx SINE Alu -10 302 1 341 247 26 0 chrX 155095529 155095606 -21878534 - MER5A DNA MER1_type -82 107 29 208 135 0 0 chrX 155095693 155095730 -21878410 + (T)n Simple_repeat Simple_repeat 1 37 0 1113 285 42 32 chrX 155096146 155096645 -21877495 + L1MC4 LINE L1 7170 7673 -369 1011 180 5 11 chrX 155096645 155096815 -21877325 - AluSg/x SINE Alu -5 305 135 2425 68 0 10 chrX 155096815 155097123 -21877017 - AluSg SINE Alu -5 305 1 1011 180 5 11 chrX 155097123 155097141 -21876999 - AluSg/x SINE Alu -175 135 118 394 250 47 35 chrX 155098533 155098705 -21875435 + L2 LINE L2 2034 2207 -1107 808 144 0 119 chrX 155098718 155098919 -21875221 - AluJb SINE Alu 0 312 136 2181 108 0 0 chrX 155098930 155099226 -21874914 - AluSx SINE Alu -16 296 1 1132 223 151 55 chrX 155099496 155100224 -21873916 - L1MB5 LINE L1 -9 6165 5354 465 263 83 0 chrX 155100229 155100385 -21873755 + L2 LINE L2 2470 2638 -676 389 252 53 23 chrX 155100385 155100516 -21873624 + L2 LINE L2 2932 3066 -247 291 264 18 54 chrX 155101576 155101743 -21872397 - L1ME LINE L1 -419 5702 5542 2123 100 0 0 chrX 155102718 155102997 -21871143 - AluSx SINE Alu -32 280 2 655 128 39 10 chrX 155103043 155103145 -21870995 + AluJb SINE Alu 13 117 -195 21 0 0 0 chrX 155103145 155103166 -21870974 + AT_rich Low_complexity Low_complexity 1 21 0 340 238 30 47 chrX 155103812 155104015 -21870125 - L1ME LINE L1 -804 5342 5159 1375 206 76 0 chrX 155104953 155105283 -21868857 + MER63 DNA MER1_type 675 1029 -33 2183 118 0 0 chrX 155105753 155106050 -21868090 + AluSx SINE Alu 1 297 -15 1209 107 0 34 chrX 155106051 155106229 -21867911 + AluSg/x SINE Alu 136 307 -5 267 322 92 63 chrX 155107412 155107586 -21866554 + MIR SINE MIR 77 255 -7 2459 48 0 3 chrX 155107590 155107885 -21866255 - AluY SINE Alu -17 294 1 202 222 0 22 chrX 155113910 155113955 -21860185 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 282 204 11 45 chrX 155114444 155114532 -21859608 + GA-rich Low_complexity Low_complexity 1 85 0 251 310 23 0 chrX 155114720 155114807 -21859333 + L3 LINE CR1 1133 1221 -356 219 333 0 42 chrX 155115457 155115529 -21858611 + L2 LINE L2 3204 3272 0 2240 79 0 3 chrX 155115766 155116057 -21858083 + AluSx SINE Alu 1 290 -22 2364 88 0 3 chrX 155117193 155117499 -21856641 + AluSq SINE Alu 1 305 -8 1433 168 98 15 chrX 155117921 155118195 -21855945 - AluJb SINE Alu -15 297 1 1124 144 11 0 chrX 155120141 155120321 -21853819 + AluSg/x SINE Alu 131 312 0 453 362 11 6 chrX 155123616 155123790 -21850350 + MIR3 SINE MIR 33 207 -1 183 429 25 0 chrX 155124703 155124822 -21849318 - MIR SINE MIR -24 238 117 509 318 107 13 chrX 155124899 155125132 -21849008 - L2 LINE L2 -2 3270 3016 423 138 0 0 chrX 155127524 155127611 -21846529 + (CTTG)n Simple_repeat Simple_repeat 2 88 0 2189 120 0 0 chrX 155127617 155127926 -21846214 - AluSg SINE Alu -1 309 1 772 286 40 0 chrX 155130435 155130687 -21843453 - L1MB7 LINE L1 -11 6173 5912 303 240 58 10 chrX 155134534 155134638 -21839502 - MER94 DNA DNA -25 109 1 231 250 0 0 chrX 155136044 155136088 -21838052 + (CCG)n Simple_repeat Simple_repeat 2 45 0 187 330 81 17 chrX 155137124 155137297 -21836843 - L2 LINE L2 -556 2758 2575 2193 96 0 7 chrX 155137560 155137861 -21836279 + AluSx SINE Alu 1 299 -13 948 138 6 29 chrX 155140365 155140717 -21833423 + (CCCCG)n Simple_repeat Simple_repeat 1 343 0 21 36 0 0 chrX 155149331 155149359 -21824781 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 155149596 155149619 -21824521 + GC_rich Low_complexity Low_complexity 1 23 0 309 269 0 19 chrX 155150410 155150521 -21823619 + GA-rich Low_complexity Low_complexity 1 108 0 385 195 35 0 chrX 155153232 155153319 -21820821 - MIR SINE MIR -126 136 47 294 263 45 109 chrX 155154007 155154163 -21819977 - MIR SINE MIR -108 154 9 1984 147 0 6 chrX 155154500 155154814 -21819326 + AluJb SINE Alu 1 312 0 331 348 179 14 chrX 155155107 155155403 -21818737 - L1ME LINE L1 -521 5641 5297 350 316 10 0 chrX 155155424 155155522 -21818618 - L1ME LINE L1 -919 5227 5129 1739 135 24 10 chrX 155155524 155155813 -21818327 - AluJo SINE Alu -19 293 1 1016 276 151 21 chrX 155155816 155156014 -21818126 - L1ME LINE L1 -1771 4375 4204 1974 134 27 0 chrX 155156014 155156312 -21817828 - AluSg SINE Alu -4 306 1 1016 276 151 21 chrX 155156312 155156390 -21817750 - L1ME LINE L1 -1942 4204 4137 2463 71 0 6 chrX 155156390 155156701 -21817439 + AluSp SINE Alu 2 310 -3 1016 276 151 21 chrX 155156701 155157179 -21816961 - L1ME LINE L1 -2009 4137 3522 2229 119 0 0 chrX 155157185 155157555 -21816585 - AluSx SINE Alu 0 370 1 244 269 0 0 chrX 155157596 155157674 -21816466 - L1ME LINE L1 -2643 3503 3426 236 98 0 0 chrX 155157670 155157711 -21816429 - L1MB4 LINE L1 0 6180 6140 * 996 158 51 0 chrX 155157711 155157869 -21816271 - AluJo/FRAM SINE Alu 0 302 137 1270 178 159 19 chrX 155157872 155158136 -21816004 - AluJo SINE Alu -1 301 1 1030 233 84 3 chrX 155158136 155158445 -21815695 - L1 LINE L1 -1188 4958 4625 323 274 17 94 chrX 155158445 155158486 -21815654 - L1ME LINE L1 -2709 3437 3394 2271 100 0 0 chrX 155158486 155158785 -21815355 - AluSx SINE Alu -13 299 1 323 274 17 94 chrX 155158785 155158860 -21815280 - L1ME LINE L1 -2752 3394 3330 332 219 0 24 chrX 155158875 155158957 -21815183 + MER116 DNA Mariner 1 80 0 6428 167 26 81 chrX 155159149 155159820 -21814320 - L1MA9 LINE L1 -216 6096 5390 2161 115 3 0 chrX 155159820 155160116 -21814024 - AluSx SINE Alu -15 297 1 6428 167 26 81 chrX 155160116 155161289 -21812851 - L1MA9 LINE L1 -922 5390 4155 2229 48 59 3 chrX 155161289 155161578 -21812562 + AluY SINE Alu 1 305 -6 6428 167 26 81 chrX 155161578 155161620 -21812520 - L1MA9 LINE L1 -2157 4155 4112 1584 185 26 29 chrX 155161620 155161928 -21812212 + AluJo SINE Alu 6 312 0 6428 167 26 81 chrX 155161928 155162054 -21812086 - L1MA9 LINE L1 -2200 4112 3981 2174 123 10 0 chrX 155162054 155162363 -21811777 - AluSx SINE Alu 0 312 1 6428 167 26 81 chrX 155162363 155162591 -21811549 - L1MA9 LINE L1 -2331 3981 3742 828 180 29 0 chrX 155162591 155162730 -21811410 - FLAM_C SINE Alu 0 143 1 1654 118 84 28 chrX 155162732 155163019 -21811121 - AluJo SINE Alu -9 303 1 6428 167 26 81 chrX 155163019 155163637 -21810503 - L1MA9 LINE L1 -2571 3741 3359 2559 55 0 0 chrX 155163637 155163947 -21810193 - AluY SINE Alu -1 310 1 6428 167 26 81 chrX 155163947 155164265 -21809875 - L1MA9 LINE L1 -2953 3359 3025 1358 143 5 0 chrX 155164279 155164482 -21809658 - AluSx SINE Alu -108 204 1 1510 226 36 10 chrX 155164482 155164893 -21809247 - L1MA9 LINE L1 -3104 3042 2621 2147 114 73 9 chrX 155164893 155165210 -21808930 - MER1B DNA MER1_type 0 337 1 755 277 26 113 chrX 155165245 155165785 -21808355 - L1ME3 LINE L1 -224 5938 5449 2211 119 0 0 chrX 155165785 155166079 -21808061 + AluSx SINE Alu 1 294 -18 755 277 26 113 chrX 155166079 155166112 -21808028 - L1ME3 LINE L1 -713 5449 5415 245 298 92 0 chrX 155166374 155166515 -21807625 - Charlie2 DNA MER1_type -472 2390 2237 271 321 84 0 chrX 155166654 155166785 -21807355 - Charlie2 DNA MER1_type -2639 143 2 202 400 58 16 chrX 155166787 155166977 -21807163 - L3b LINE CR1 0 1583 1386 * 285 297 22 33 chrX 155166949 155167040 -21807100 - L2 LINE L2 0 3272 3183 188 299 198 17 chrX 155167038 155167215 -21806925 - L2 LINE L2 -780 2534 2326 * 224 333 71 24 chrX 155167335 155167461 -21806679 - L2 LINE L2 -8 3264 3133 388 198 208 0 chrX 155167792 155167898 -21806242 - MLT1B LTR MaLR -71 319 192 2206 121 0 0 chrX 155168170 155168483 -21805657 - AluSq SINE Alu 0 313 1 363 299 67 72 chrX 155168505 155168647 -21805493 - L1M4 LINE L1 -3144 3002 2861 849 141 0 15 chrX 155168647 155168782 -21805358 - FLAM_C SINE Alu 0 133 1 363 299 67 72 chrX 155168782 155169027 -21805113 - L1M4 LINE L1 -3285 2861 2616 1699 161 51 0 chrX 155169027 155169319 -21804821 - AluSx SINE Alu -5 307 1 363 299 67 72 chrX 155169319 155169486 -21804654 - L1M4 LINE L1 -3530 2616 2450 1892 105 53 0 chrX 155169505 155169790 -21804350 - AluSx SINE Alu -12 300 1 301 389 16 0 chrX 155169882 155170008 -21804132 - L1M4 LINE L1 -3736 2410 2283 266 50 25 0 chrX 155170584 155170624 -21803516 + (CAAT)n Simple_repeat Simple_repeat 3 43 0 183 148 33 16 chrX 155170723 155170784 -21803356 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 681 221 0 0 chrX 155170785 155170907 -21803233 + FLAM_A SINE Alu 2 123 -10 266 165 51 19 chrX 155170918 155171076 -21803064 + (TCTA)n Simple_repeat Simple_repeat 3 165 0 580 224 204 36 chrX 155171081 155171197 -21802943 - L1MB5 LINE L1 -9 6165 6070 1826 144 13 26 chrX 155171197 155171510 -21802630 + AluJo SINE Alu 1 309 -3 580 224 204 36 chrX 155171510 155171805 -21802335 - L1MB5 LINE L1 -104 6070 5651 186 103 0 0 chrX 155171973 155172002 -21802138 + (TCCCC)n Simple_repeat Simple_repeat 5 33 0 988 211 33 93 chrX 155174364 155174729 -21799411 + MLT1B LTR MaLR 7 349 -41 783 303 29 61 chrX 155174981 155175424 -21798716 + MLT1J LTR MaLR 75 503 -8 1562 189 0 4 chrX 155177529 155177794 -21796346 - AluJo SINE Alu -19 293 30 1822 138 6 45 chrX 155177806 155178118 -21796022 - AluJb SINE Alu -12 300 1 1647 278 15 15 chrX 155178437 155178901 -21795239 + MLT1C LTR MaLR 1 464 -3 4189 205 38 18 chrX 155181160 155182437 -21791703 + L1MB7 LINE L1 4887 6182 -2 2194 112 0 13 chrX 155182584 155182898 -21791242 - AluSx SINE Alu -2 310 1 290 181 24 36 chrX 155183747 155183830 -21790310 - L2 LINE L2 -57 3256 3175 2222 101 0 0 chrX 155184018 155184304 -21789836 + AluSx SINE Alu 1 286 -26 539 311 84 54 chrX 155184908 155185988 -21788152 + L1MEd LINE L1 426 1576 -4734 890 145 0 0 chrX 155186010 155186141 -21787999 + FLAM_C SINE Alu 3 133 0 2276 84 0 0 chrX 155186569 155186879 -21787261 - AluY SINE Alu -1 310 1 1964 139 13 3 chrX 155186968 155187277 -21786863 + AluJb SINE Alu 1 312 0 1699 141 25 28 chrX 155188348 155188631 -21785509 + AluJo SINE Alu 1 282 -30 400 272 64 40 chrX 155189080 155189253 -21784887 - MIR SINE MIR -35 227 51 188 111 28 0 chrX 155192233 155192269 -21781871 + CT-rich Low_complexity Low_complexity 1 37 0 212 239 15 15 chrX 155192373 155192440 -21781700 + G-rich Low_complexity Low_complexity 1 67 0 193 114 0 45 chrX 155192580 155192624 -21781516 + (CCCCG)n Simple_repeat Simple_repeat 5 46 0 21 36 0 0 chrX 155192933 155192961 -21781179 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 155193040 155193061 -21781079 + GC_rich Low_complexity Low_complexity 1 21 0 563 319 144 38 chrX 155194772 155195189 -21778951 + L1MC5 LINE L1 7423 7883 -78 2055 122 0 34 chrX 155195263 155195584 -21778556 - AluSx SINE Alu -2 310 1 441 123 0 0 chrX 155195629 155195694 -21778446 + AluS SINE Alu 233 297 -12 2270 109 0 0 chrX 155195733 155196036 -21778104 - AluSx SINE Alu -9 303 1 2207 104 3 0 chrX 155196526 155196824 -21777316 + AluSq SINE Alu 1 299 -14 264 256 116 16 chrX 155198500 155198629 -21775511 - L1ME4a LINE L1 0 6121 5980 2222 88 7 10 chrX 155198848 155199156 -21774984 - AluSq SINE Alu -6 307 1 357 252 271 13 chrX 155199237 155199388 -21774752 - L1ME4a LINE L1 -420 5701 5512 1331 147 118 29 chrX 155199486 155199731 -21774409 + AluJb SINE Alu 13 279 -33 1791 130 0 80 chrX 155200392 155200731 -21773409 - AluJo SINE Alu 0 312 1 2222 87 0 26 chrX 155201005 155201314 -21772826 - AluSq SINE Alu -12 301 1 533 217 26 0 chrX 155202362 155202477 -21771663 - MSTD LTR MaLR -278 118 1 2188 81 47 7 chrX 155203013 155203311 -21770829 + AluSq SINE Alu 1 310 -3 198 396 66 28 chrX 155203521 155203703 -21770437 + L3 LINE CR1 80 268 -1309 205 339 32 73 chrX 155203780 155203904 -21770236 + L3 LINE CR1 415 533 -1044 2265 75 0 7 chrX 155203972 155204266 -21769874 - AluY SINE Alu -19 292 1 288 352 85 40 chrX 155204374 155204573 -21769567 + L3 LINE CR1 208 415 -1162 1663 148 72 0 chrX 155204749 155205050 -21769090 - AluJo SINE Alu 0 320 1 2020 129 7 10 chrX 155205255 155205564 -21768576 - AluSx SINE Alu 0 312 5 318 325 34 0 chrX 155206711 155206828 -21767312 - L1MB2 LINE L1 -39 6132 6012 180 149 64 43 chrX 155207360 155207407 -21766733 + L2 LINE L2 3263 3310 -3 285 337 20 10 chrX 155210475 155210576 -21763564 - L2 LINE L2 -953 2361 2260 557 301 11 6 chrX 155212492 155212668 -21761472 + MIR SINE MIR 8 184 -78 254 276 66 0 chrX 155218108 155218184 -21755956 + L2 LINE L2 3143 3223 -49 237 216 0 0 chrX 155219108 155219159 -21754981 + L2 LINE L2 1780 1830 -1484 1240 229 54 38 chrX 155219206 155219630 -21754510 - L1MB3 LINE L1 -28 6155 5725 854 280 166 6 chrX 155219910 155220271 -21753869 + L2 LINE L2 2175 2593 -721 223 158 18 18 chrX 155221522 155221579 -21752561 + CT-rich Low_complexity Low_complexity 3 59 0 247 180 60 0 chrX 155222503 155222553 -21751587 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 228 67 0 0 chrX 155223769 155223799 -21750341 + (CAGGG)n Simple_repeat Simple_repeat 3 32 0 213 230 162 40 chrX 155226342 155226416 -21747724 + MIR SINE MIR 82 164 -98 225 0 0 0 chrX 155227754 155227779 -21746361 + (CGGG)n Simple_repeat Simple_repeat 1 25 0 181 80 20 80 chrX 155227879 155227929 -21746211 + (GGGGA)n Simple_repeat Simple_repeat 4 50 0 180 77 0 0 chrX 155227942 155227968 -21746172 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 99 0 0 chrX 155228183 155228254 -21745886 + GC_rich Low_complexity Low_complexity 1 71 0 27 87 0 0 chrX 155228278 155228347 -21745793 + GC_rich Low_complexity Low_complexity 1 69 0 21 36 0 0 chrX 155228520 155228548 -21745592 + GC_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 155228621 155228657 -21745483 + GC_rich Low_complexity Low_complexity 1 36 0 339 231 15 15 chrX 155228662 155228796 -21745344 + G-rich Low_complexity Low_complexity 2 135 0 219 0 22 89 chrX 155228875 155228920 -21745220 + (CGG)n Simple_repeat Simple_repeat 2 43 0 34 0 0 0 chrX 155229054 155229088 -21745052 + GC_rich Low_complexity Low_complexity 1 34 0 330 87 0 0 chrX 155229113 155229159 -21744981 + (CGG)n Simple_repeat Simple_repeat 1 46 0 208 198 12 12 chrX 155229343 155229424 -21744716 + C-rich Low_complexity Low_complexity 4 84 0 193 361 56 37 chrX 155231284 155231500 -21742640 + L2 LINE L2 2566 2785 -529 202 102 0 41 chrX 155232328 155232377 -21741763 + (GGGGA)n Simple_repeat Simple_repeat 3 49 0 345 161 0 0 chrX 155232858 155232920 -21741220 - L1PB4 LINE L1 0 6156 6095 2560 143 72 30 chrX 155232935 155233494 -21740646 + LTR8A LTR ERV1 1 582 -145 820 75 0 6 chrX 155233497 155233739 -21740401 + AluSx SINE Alu 1 292 -20 2222 111 0 0 chrX 155233751 155234058 -21740082 + AluY SINE Alu 1 307 -4 251 167 0 0 chrX 155234059 155234101 -21740039 + LTR8A LTR ERV1 575 616 -111 * 304 114 171 29 chrX 155234070 155234140 -21740000 + LTR8 LTR ERV1 538 617 -74 400 148 0 0 chrX 155234140 155234201 -21739939 + AluS SINE Alu 1 61 -250 1550 165 66 103 chrX 155234201 155234668 -21739472 - LTR7 LTR ERV1 0 450 1 1484 143 9 0 chrX 155234670 155234901 -21739239 + AluJb SINE Alu 59 291 -21 2245 97 3 0 chrX 155234903 155235201 -21738939 + AluSx SINE Alu 1 299 -13 460 136 0 49 chrX 155235201 155235282 -21738858 + LTR8 LTR ERV1 615 691 0 310 154 0 0 chrX 155235282 155235334 -21738806 - L1PB4 LINE L1 -95 6061 6010 * 2794 196 116 24 chrX 155235331 155236133 -21738007 - L1MC3 LINE L1 -21 7764 6889 2104 123 7 3 chrX 155236133 155236443 -21737697 - AluSx SINE Alu -1 311 1 1102 75 0 0 chrX 155236455 155236589 -21737551 - AluSg/x SINE Alu -21 289 156 2538 163 19 14 chrX 155236603 155237027 -21737113 - MSTB LTR MaLR 0 426 1 255 246 0 0 chrX 155237051 155237116 -21737024 - Charlie2 DNA MER1_type -66 2796 2732 1086 173 5 20 chrX 155237116 155237318 -21736822 - AluJo SINE Alu -9 303 105 2450 87 0 0 chrX 155237319 155237631 -21736509 + AluSx SINE Alu 1 312 0 1325 185 21 64 chrX 155237636 155238713 -21735427 + L1MC3 LINE L1 5272 6442 -1343 1859 163 0 3 chrX 155238713 155239020 -21735120 - AluJb SINE Alu -6 306 1 1325 185 21 64 chrX 155239020 155239210 -21734930 + L1MC3 LINE L1 6442 6639 -1146 305 319 17 26 chrX 155239248 155239364 -21734776 - L1MC4 LINE L1 -1340 6702 6588 213 156 0 44 chrX 155239366 155239411 -21734729 + (CATA)n Simple_repeat Simple_repeat 3 45 0 352 194 9 83 chrX 155239412 155239520 -21734620 - L1MC4 LINE L1 -1339 6703 6604 344 192 0 115 chrX 155239505 155239609 -21734531 - L1MC4 LINE L1 -1339 6703 6612 * 958 183 126 11 chrX 155239620 155239882 -21734258 + L1MC3 LINE L1 6572 6863 -922 1905 126 11 3 chrX 155239953 155240239 -21733901 + AluSq SINE Alu 1 288 -25 3232 133 10 26 chrX 155240239 155240296 -21733844 - LTR10E LTR ERV1 -9 582 526 2270 115 0 0 chrX 155240296 155240608 -21733532 - AluSq SINE Alu 0 313 2 3232 133 10 26 chrX 155240608 155241175 -21732965 - LTR10E LTR ERV1 -65 526 1 303 93 0 0 chrX 155241184 155241227 -21732913 + (A)n Simple_repeat Simple_repeat 1 43 0 719 126 0 0 chrX 155241227 155241330 -21732810 - FLAM_C SINE Alu -40 103 1 2141 110 13 7 chrX 155241365 155241675 -21732465 + AluSx SINE Alu 1 312 0 453 298 0 0 chrX 155242016 155242147 -21731993 - Charlie2 DNA MER1_type -656 2206 2076 308 255 81 20 chrX 155242188 155242337 -21731803 - Charlie2 DNA MER1_type -2655 207 50 395 249 129 39 chrX 155242624 155242956 -21731184 - L2 LINE L2 -257 3056 2628 212 105 53 53 chrX 155243304 155243361 -21730779 + G-rich Low_complexity Low_complexity 4 60 0 29 70 0 0 chrX 155243424 155243481 -21730659 + GC_rich Low_complexity Low_complexity 1 57 0 311 213 7 19 chrX 155244182 155244337 -21729803 + (TG)n Simple_repeat Simple_repeat 1 153 0 209 250 0 56 chrX 155244410 155244482 -21729658 + C-rich Low_complexity Low_complexity 1 68 0 207 318 73 0 chrX 155244670 155244780 -21729360 + MIR SINE MIR 35 152 -56 212 311 136 0 chrX 155248827 155248930 -21725210 - L2 LINE L2 -14 3299 3183 515 134 0 0 chrX 155250185 155250267 -21723873 + FLAM_C SINE Alu 59 140 -3 567 190 133 38 chrX 155250292 155250450 -21723690 - MIR SINE MIR -50 212 40 1927 125 50 16 chrX 155250655 155250958 -21723182 - 7SLRNA srpRNA srpRNA -3 317 5 223 242 30 15 chrX 155251579 155251645 -21722495 - L2 LINE L2 -559 2755 2689 485 304 8 0 chrX 155251851 155252108 -21722032 - L1MEc LINE L1 -3623 2803 2545 4701 153 23 11 chrX 155252118 155253103 -21721037 - L1MB7 LINE L1 -16 6168 5173 2339 90 0 10 chrX 155253113 155253423 -21720717 - AluSq SINE Alu -6 307 1 1735 176 25 124 chrX 155253424 155253746 -21720394 - L1MB7 LINE L1 -1581 4565 4345 1533 143 52 37 chrX 155253746 155253899 -21720241 - AluJo SINE Alu -36 276 116 386 39 19 0 chrX 155253899 155253951 -21720189 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 1533 143 52 37 chrX 155253951 155254069 -21720071 - AluJo SINE Alu -196 116 1 1735 176 25 124 chrX 155254069 155254429 -21719711 - L1MB7 LINE L1 -1801 4345 3951 4611 215 48 13 chrX 155255068 155256455 -21717685 - L1MB7 LINE L1 -2191 3955 2521 1037 63 0 0 chrX 155256457 155256583 -21717557 - AluSq/x SINE Alu -181 132 7 878 266 38 42 chrX 155256660 155257111 -21717029 - L1MEc LINE L1 -4308 2299 1851 2445 84 0 0 chrX 155257121 155257431 -21716709 - AluSx SINE Alu -2 310 1 867 216 0 18 chrX 155257468 155257639 -21716501 + AluJb SINE Alu 123 290 -22 1022 220 42 28 chrX 155257642 155258001 -21716139 - L1MEc LINE L1 -4768 1660 1297 353 242 11 0 chrX 155258010 155258105 -21716035 - L1MEc LINE L1 -6313 113 18 1367 146 0 9 chrX 155258105 155258318 -21715822 - AluJb SINE Alu -44 268 58 514 262 33 11 chrX 155258344 155258527 -21715613 - L1MEc LINE L1 -6162 976 790 398 282 150 56 chrX 155258553 155258708 -21715432 + L1MDa LINE L1 2314 2453 -4087 2422 62 16 0 chrX 155258708 155259014 -21715126 + AluY SINE Alu 1 311 0 398 282 150 56 chrX 155259014 155259193 -21714947 + L1MDa LINE L1 2448 2678 -3857 2036 127 3 16 chrX 155259193 155259509 -21714631 + AluJb SINE Alu 1 312 0 265 305 62 0 chrX 155259660 155259788 -21714352 + L1M4b LINE L1 175 310 -6549 272 321 71 9 chrX 155260075 155260187 -21713953 + L1M4b LINE L1 1070 1188 -5667 21 57 0 0 chrX 155260220 155260255 -21713885 + AT_rich Low_complexity Low_complexity 1 35 0 270 297 62 0 chrX 155260365 155260493 -21713647 - L1MEc LINE L1 -6549 310 175 1132 142 6 0 chrX 155260643 155260812 -21713328 - AluJ SINE Alu -14 298 129 2358 78 0 7 chrX 155260827 155261136 -21713004 - AluSx SINE Alu -3 309 3 28 0 0 0 chrX 155261142 155261170 -21712970 + AT_rich Low_complexity Low_complexity 1 28 0 809 142 0 24 chrX 155261171 155261298 -21712842 - AluJ SINE Alu -188 124 1 462 270 135 72 chrX 155261317 155261439 -21712701 - L1MEc LINE L1 -3890 2494 2381 2473 68 3 0 chrX 155261439 155261749 -21712391 - AluY SINE Alu 0 311 1 462 270 135 72 chrX 155261749 155261958 -21712182 - L1MEc LINE L1 -4003 2381 2163 471 280 29 11 chrX 155261978 155262153 -21711987 + L1MEc LINE L1 49 226 -6170 296 164 0 0 chrX 155262160 155262221 -21711919 + L1MEc LINE L1 829 889 -5507 4247 182 49 19 chrX 155262227 155263162 -21710978 + L1MCa LINE L1 23 985 -5441 538 248 7 14 chrX 155263162 155263307 -21710833 - MLT1J LTR MaLR -366 145 2 685 267 119 54 chrX 155263314 155263929 -21710211 - L1MEc LINE L1 -4910 1462 808 427 205 171 34 chrX 155263939 155264056 -21710084 + FLAM_C SINE Alu 1 133 0 244 0 56 0 chrX 155264189 155264225 -21709915 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 1695 101 47 72 chrX 155264260 155264538 -21709602 - AluSx SINE Alu -41 271 1 695 224 0 0 chrX 155264750 155264897 -21709243 - MLT1D LTR MaLR -2 503 357 271 294 139 48 chrX 155265470 155265657 -21708483 + L2 LINE L2 3107 3310 -3 476 110 82 0 chrX 155268454 155268527 -21705613 + AluJb SINE Alu 169 247 -65 254 273 55 27 chrX 155268615 155268725 -21705415 - MIR SINE MIR -67 195 83 26 0 0 0 chrX 155268965 155268991 -21705149 + GC_rich Low_complexity Low_complexity 1 26 0 38 22 0 0 chrX 155270025 155270070 -21704070 + GC_rich Low_complexity Low_complexity 1 45 0 184 324 28 14 chrX 155270295 155270366 -21703774 + MIR SINE MIR 74 145 -63 207 140 0 70 chrX 155270805 155270862 -21703278 + (CCCTG)n Simple_repeat Simple_repeat 3 55 0 378 338 69 34 chrX 155271125 155271584 -21702556 + L1ME LINE L1 5292 5752 -369 22 0 0 0 chrX 155272782 155272804 -21701336 + GC_rich Low_complexity Low_complexity 1 22 0 282 29 0 0 chrX 155272877 155272912 -21701228 + (CCCCCG)n Simple_repeat Simple_repeat 5 39 0 30 93 0 0 chrX 155272912 155272998 -21701142 + GC_rich Low_complexity Low_complexity 1 86 0 322 242 20 101 chrX 155273213 155273362 -21700778 + L2 LINE L2 3136 3272 0 195 146 0 0 chrX 155274757 155274798 -21699342 + (CCG)n Simple_repeat Simple_repeat 2 42 0 247 318 142 27 chrX 155275453 155275601 -21698539 - MIR SINE MIR -70 192 28 254 266 11 53 chrX 155275937 155276031 -21698109 + MIR3 SINE MIR 97 186 -22 189 265 20 0 chrX 155278924 155278973 -21695167 - MIR SINE MIR -107 101 52 230 180 49 16 chrX 155282393 155282454 -21691686 - MLT1-int LTR MaLR 0 1371 1309 1791 145 10 20 chrX 155283530 155283834 -21690306 - AluJb SINE Alu -5 307 7 186 43 0 0 chrX 155284955 155284978 -21689162 + (TA)n Simple_repeat Simple_repeat 2 24 0 918 227 5 14 chrX 155285052 155285272 -21688868 + MLT1C LTR MaLR 250 467 0 247 331 117 39 chrX 155285294 155285448 -21688692 - MIR SINE MIR -43 219 54 1809 219 68 34 chrX 155285656 155286139 -21688001 - L1M4 LINE L1 -3135 3011 2503 1772 186 0 3 chrX 155286139 155286434 -21687706 - AluJb SINE Alu -18 294 1 1809 219 68 34 chrX 155286434 155286538 -21687602 - L1M4 LINE L1 -3643 2503 2404 222 372 8 8 chrX 155287316 155287437 -21686703 - L2 LINE L2 -271 3001 2881 2300 99 0 3 chrX 155287438 155287751 -21686389 + AluSx SINE Alu 1 312 0 366 143 0 0 chrX 155288050 155288127 -21686013 + (CA)n Simple_repeat Simple_repeat 2 78 0 200 188 0 0 chrX 155288709 155288741 -21685399 + (TG)n Simple_repeat Simple_repeat 2 33 0 391 241 78 50 chrX 155290198 155290590 -21683550 - MLT1D LTR MaLR -15 452 2 216 0 0 0 chrX 155291993 155292017 -21682123 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 455 259 96 6 chrX 155293009 155293175 -21680965 - MLT1C LTR MaLR -3 464 284 393 252 104 26 chrX 155294012 155294242 -21679898 - HAL1 LINE L1 -442 2065 1818 251 324 14 0 chrX 155294377 155294451 -21679689 + MIR3 SINE MIR 82 156 -52 425 268 87 0 chrX 155294805 155294932 -21679208 - L1MD2 LINE L1 -196 6163 6026 717 244 63 9 chrX 155294932 155295153 -21678987 - L1MD2 LINE L1 -753 5606 5374 472 288 49 49 chrX 155295242 155295485 -21678655 - L1MC5 LINE L1 -750 7211 6969 2133 106 0 10 chrX 155295502 155295795 -21678345 + AluSx SINE Alu 1 290 -22 501 131 0 0 chrX 155295835 155295919 -21678221 + (TTTCC)n Simple_repeat Simple_repeat 2 85 0 1231 140 0 0 chrX 155295920 155296099 -21678041 - AluSg/x SINE Alu 0 312 134 329 304 10 0 chrX 155296376 155296478 -21677662 - L1MC5 LINE L1 -1999 5809 5707 400 291 6 12 chrX 155296504 155296668 -21677472 - L1MCa LINE L1 -1339 6983 1995 372 279 47 0 chrX 155296601 155296687 -21677453 + L1MC4 LINE L1 6614 6703 -1339 * 415 339 0 0 chrX 155296687 155296796 -21677344 - L1MC4 LINE L1 -1339 6703 6595 1044 151 0 0 chrX 155296798 155296977 -21677163 + (TA)n Simple_repeat Simple_repeat 2 180 0 213 233 0 0 chrX 155296977 155297020 -21677120 + (TATATG)n Simple_repeat Simple_repeat 1 43 0 351 298 40 45 chrX 155297123 155297321 -21676819 - L1MCa LINE L1 -5833 583 387 1117 105 70 12 chrX 155297325 155297496 -21676644 + AluJo SINE Alu 1 181 -131 745 281 59 63 chrX 155297589 155297741 -21676399 + L1MEd LINE L1 423 574 -5545 1902 136 16 23 chrX 155297741 155298049 -21676091 + AluJo SINE Alu 1 306 -6 745 281 59 63 chrX 155298049 155298436 -21675704 + L1MEd LINE L1 574 960 -5159 225 306 36 0 chrX 155298479 155298590 -21675550 + L1ME LINE L1 48 162 -5908 2860 208 7 6 chrX 155299095 155299846 -21674294 + L1M4 LINE L1 4748 5500 -678 1745 148 17 10 chrX 155299848 155300145 -21673995 + AluJb SINE Alu 3 301 -11 1015 165 0 0 chrX 155300146 155300304 -21673836 + AluJb SINE Alu 134 291 -21 2236 65 4 0 chrX 155500421 155500700 -21473440 + AluSg SINE Alu 1 280 -30 1630 273 42 42 chrX 155501021 155501532 -21472608 + L1M4 LINE L1 3257 3767 -2379 2258 96 0 3 chrX 155501532 155501844 -21472296 + AluSx SINE Alu 1 311 -1 1630 273 42 42 chrX 155501844 155501960 -21472180 + L1M4 LINE L1 3767 3882 -2264 1758 153 20 0 chrX 155501960 155502088 -21472052 + AluJb SINE Alu 1 125 -187 387 0 0 0 chrX 155502088 155502131 -21472009 + (CA)n Simple_repeat Simple_repeat 2 44 0 1758 153 20 0 chrX 155502131 155502296 -21471844 + AluJb SINE Alu 125 300 -12 1630 273 42 42 chrX 155502296 155502499 -21471641 + L1M4 LINE L1 3881 4088 -2058 2236 92 7 0 chrX 155502502 155502806 -21471334 + AluSx SINE Alu 7 312 0 347 285 44 0 chrX 155502821 155502958 -21471182 + L1M4 LINE L1 4942 5084 -1062 1630 167 10 14 chrX 155503089 155503377 -21470763 + AluJo SINE Alu 1 287 -25 255 104 1 35 chrX 155503405 155503559 -21470581 + FLAM_A SINE Alu 1 127 -6 1360 239 55 29 chrX 155503566 155503984 -21470156 - L1ME1 LINE L1 -46 6120 5692 1917 155 7 0 chrX 155504245 155504554 -21469586 + AluSx SINE Alu 1 311 -1 680 282 59 16 chrX 155504713 155504968 -21469172 + HAL1 LINE L1 410 675 -1832 450 278 83 0 chrX 155504990 155505170 -21468970 + HAL1 LINE L1 1303 1497 -1010 601 235 145 17 chrX 155505226 155505576 -21468564 - MER74B LTR ERVL -74 548 65 428 62 16 0 chrX 155505657 155505721 -21468419 + (CA)n Simple_repeat Simple_repeat 1 65 0 623 243 184 13 chrX 155505723 155506032 -21468108 + HAL1 LINE L1 1509 1870 -637 191 250 83 0 chrX 155506477 155506537 -21467603 - L2 LINE L2 0 3272 3208 2177 134 99 3 chrX 155507441 155507806 -21466334 + L1MCa LINE L1 74 473 -5953 3915 206 48 90 chrX 155507807 155508569 -21465571 + L1MCa LINE L1 1529 2321 -4105 2098 102 0 0 chrX 155508569 155508885 -21465255 + AluSx SINE Alu 1 316 0 3915 206 48 90 chrX 155508885 155509108 -21465032 + L1MCa LINE L1 2321 2552 -3874 2162 72 48 3 chrX 155509108 155509400 -21464740 + AluSp SINE Alu 1 305 -8 3915 206 48 90 chrX 155509400 155510150 -21463990 + L1MCa LINE L1 2552 3332 -3094 915 149 0 0 chrX 155510150 155510291 -21463849 + FLAM_C SINE Alu 1 141 -2 3915 206 48 90 chrX 155510291 155510630 -21463510 + L1MCa LINE L1 3332 3731 -2695 2054 131 0 10 chrX 155510630 155510942 -21463198 - AluSx SINE Alu -3 309 1 3915 206 48 90 chrX 155510942 155511058 -21463082 + L1MCa LINE L1 3731 3850 -2576 1419 174 188 0 chrX 155511062 155511355 -21462785 + MER7A DNA MER2_type 1 346 0 1176 223 49 0 chrX 155511356 155511621 -21462519 + L1MCa LINE L1 3854 4131 -2295 2141 75 72 0 chrX 155511624 155511916 -21462224 + AluSq SINE Alu 1 313 0 1044 133 0 6 chrX 155511925 155512114 -21462026 + AluSg/x SINE Alu 129 316 0 4411 120 3 2 chrX 155512116 155512756 -21461384 + L1MC1 LINE L1 5319 5959 -374 583 118 21 0 chrX 155512756 155512838 -21461302 + L1MC1 LINE L1 6239 6333 0 283 248 26 4 chrX 155512887 155512984 -21461156 + LTR33 LTR ERVL 61 176 -345 1441 104 0 0 chrX 155513194 155513386 -21460754 + MSTA LTR MaLR 1 192 -236 1020 89 19 25 chrX 155513386 155513543 -21460597 + AluSg/x SINE Alu 147 302 -10 2097 128 0 10 chrX 155514074 155514387 -21459753 - AluSx SINE Alu -2 310 1 2325 60 3 3 chrX 155514409 155514710 -21459430 - AluY SINE Alu -5 306 6 1395 249 98 50 chrX 155514723 155514856 -21459284 - HAL1 LINE L1 -427 2080 1955 2424 66 0 0 chrX 155514856 155515158 -21458982 - AluSx SINE Alu -10 302 1 1395 249 98 50 chrX 155515158 155516034 -21458106 - HAL1 LINE L1 -552 1955 812 2217 109 0 3 chrX 155516586 155516898 -21457242 - AluSx SINE Alu -1 311 1 666 109 0 0 chrX 155516957 155517076 -21457064 + (TG)n Simple_repeat Simple_repeat 2 120 0 378 145 0 0 chrX 155517233 155517295 -21456845 - AluJo SINE Alu -5 297 236 1156 138 21 5 chrX 155517295 155517484 -21456656 - AluJo SINE Alu -120 192 1 2407 72 0 0 chrX 155517743 155518047 -21456093 - AluY SINE Alu -7 304 1 284 321 22 44 chrX 155518243 155518514 -21455626 - L1M4 LINE L1 -1543 4603 4339 5579 131 27 30 chrX 155518645 155518863 -21455277 - L1MA6 LINE L1 -5 6295 6078 1921 126 14 17 chrX 155518863 155519157 -21454983 - AluSx SINE Alu -19 293 1 5579 131 27 30 chrX 155519157 155519839 -21454301 - L1MA6 LINE L1 -222 6078 5396 195 42 0 0 chrX 155519847 155519871 -21454269 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1761 168 7 3 chrX 155519871 155520166 -21453974 - AluJo SINE Alu -12 300 2 5579 131 27 30 chrX 155520166 155520239 -21453901 - L1MA6 LINE L1 -904 5396 5324 537 144 0 0 chrX 155520257 155520347 -21453793 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 2040 97 0 17 chrX 155520347 155520635 -21453505 - AluSc SINE Alu -26 283 1 1431 129 4 37 chrX 155520638 155520879 -21453261 - AluJo SINE Alu -6 306 74 544 243 203 67 chrX 155520901 155521261 -21452879 - L1M4 LINE L1 -2196 3950 3640 261 0 0 0 chrX 155521261 155521290 -21452850 + (TC)n Simple_repeat Simple_repeat 2 30 0 544 243 203 67 chrX 155521290 155521707 -21452433 - L1M4 LINE L1 -2506 3640 3071 1341 269 212 26 chrX 155521751 155522233 -21451907 + L2 LINE L2 2264 2655 -658 1763 136 7 4 chrX 155522233 155522512 -21451628 + AluJb SINE Alu 1 280 -32 1341 269 212 26 chrX 155522512 155522916 -21451224 + L2 LINE L2 2655 3294 -19 22 35 0 0 chrX 155523847 155523876 -21450264 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chrX 155524005 155524025 -21450115 + (CCG)n Simple_repeat Simple_repeat 3 22 0 27 0 0 0 chrX 155524329 155524356 -21449784 + GC_rich Low_complexity Low_complexity 1 27 0 29 28 0 0 chrX 155524412 155524448 -21449692 + GC_rich Low_complexity Low_complexity 1 36 0 2119 79 6 70 chrX 155527821 155528151 -21445989 - AluSg1 SINE Alu 0 309 1 262 300 118 18 chrX 155528191 155528301 -21445839 - MIR3 SINE MIR -10 198 78 192 152 0 0 chrX 155529550 155529583 -21444557 + A-rich Low_complexity Low_complexity 1 33 0 239 0 32 0 chrX 155530261 155530292 -21443848 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2181 106 0 0 chrX 155531223 155531525 -21442615 + AluSx SINE Alu 1 302 -10 236 227 113 64 chrX 155531566 155531668 -21442472 - L1ME4a LINE L1 -96 6025 5912 2165 86 4 0 chrX 155531668 155531978 -21442162 - AluSx SINE Alu 0 311 1 236 227 113 64 chrX 155531978 155532015 -21442125 - L1ME4a LINE L1 -209 5912 5878 228 315 94 8 chrX 155532174 155532301 -21441839 - L1ME4a LINE L1 -2208 5600 5463 2482 52 0 3 chrX 155532492 155532801 -21441339 - AluY SINE Alu -3 308 1 2187 107 0 0 chrX 155532911 155533211 -21440929 + AluSx SINE Alu 1 300 -12 284 232 116 0 chrX 155533493 155533562 -21440578 - L2 LINE L2 0 3272 3196 889 132 0 107 chrX 155533937 155534134 -21440006 + FRAM SINE Alu 1 176 0 2163 116 3 0 chrX 155534397 155534700 -21439440 + AluSx SINE Alu 1 304 -8 2180 114 0 0 chrX 155534709 155535008 -21439132 + AluSq SINE Alu 1 299 -14 2261 79 0 3 chrX 155535111 155535401 -21438739 + AluSc SINE Alu 1 289 -20 28 0 0 0 chrX 155535420 155535448 -21438692 + AT_rich Low_complexity Low_complexity 1 28 0 2333 49 0 3 chrX 155535450 155535738 -21438402 + AluY SINE Alu 1 287 -24 1044 154 28 28 chrX 155535747 155535961 -21438179 - L1MB3 LINE L1 -19 6164 5951 343 265 75 27 chrX 155536049 155536196 -21437944 - L1MC4a LINE L1 -1897 5911 5758 1505 175 0 63 chrX 155536201 155536532 -21437608 - AluJo SINE Alu -1 311 2 318 287 112 137 chrX 155537010 155537411 -21436729 - L2 LINE L2 -23 3249 2859 2069 107 40 0 chrX 155537454 155537754 -21436386 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 155538088 155538109 -21436031 + AT_rich Low_complexity Low_complexity 1 21 0 2253 97 0 0 chrX 155539121 155539420 -21434720 + AluSx SINE Alu 1 299 -13 880 103 0 16 chrX 155539942 155540068 -21434072 + FLAM_C SINE Alu 1 124 -19 1608 173 148 42 chrX 155540180 155540264 -21433876 + Charlie4a DNA MER1_type 30 104 -1857 895 145 0 0 chrX 155540264 155540395 -21433745 + AluJo/FLAM SINE Alu 2 132 -170 2354 84 0 0 chrX 155540398 155540697 -21433443 + AluSx SINE Alu 1 299 -13 1608 173 148 42 chrX 155540697 155541041 -21433099 + Charlie4a DNA MER1_type 105 508 0 822 164 0 0 chrX 155541088 155541210 -21432930 + FLAM_A SINE Alu 1 122 -11 2067 93 7 0 chrX 155541440 155541761 -21432379 - AluSc SINE Alu 0 323 1 352 258 107 44 chrX 155541763 155541825 -21432315 - L1ME4a LINE L1 -118 6003 5946 1704 155 24 7 chrX 155541825 155542115 -21432025 - AluJb SINE Alu -17 295 1 352 258 107 44 chrX 155542115 155542211 -21431929 - L1ME4a LINE L1 -175 5946 5835 1759 162 13 10 chrX 155542259 155542568 -21431572 - AluJb SINE Alu -2 310 1 293 174 137 56 chrX 155542572 155542733 -21431407 - L1ME4a LINE L1 -4 6117 5944 928 256 123 58 chrX 155542789 155543055 -21431085 + L2 LINE L2 2198 2445 -869 2756 10 0 0 chrX 155543055 155543364 -21430776 - AluYb8 SINE Alu -9 309 1 1896 85 81 7 chrX 155543366 155543638 -21430502 - AluSg SINE Alu -18 292 1 928 256 123 58 chrX 155543638 155543750 -21430390 + L2 LINE L2 2445 2604 -710 21 0 0 0 chrX 155543851 155543872 -21430268 + AT_rich Low_complexity Low_complexity 1 21 0 3640 72 2 0 chrX 155543877 155544347 -21429793 - L1PB1 LINE L1 -1 6150 5680 600 266 123 83 chrX 155544578 155544778 -21429362 - L2 LINE L2 -4 3268 3077 2089 142 39 6 chrX 155544778 155545115 -21429025 + MER7A DNA MER2_type 1 346 0 600 266 123 83 chrX 155545115 155545361 -21428779 - L2 LINE L2 -195 3077 2804 434 290 72 19 chrX 155545423 155545685 -21428455 - HAL1 LINE L1 -4 2503 2228 2305 106 0 0 chrX 155545717 155546009 -21428131 - AluSx SINE Alu -20 292 1 345 352 55 16 chrX 155546036 155546218 -21427922 - HAL1b LINE L1 -440 908 720 536 239 142 44 chrX 155546570 155546796 -21427344 - HAL1 LINE L1 -596 1911 1664 269 247 13 13 chrX 155546797 155546874 -21427266 + MLT1L LTR MaLR 1 77 -538 497 286 71 39 chrX 155546924 155547317 -21426823 + MLT1L LTR MaLR 179 613 -2 810 243 141 65 chrX 155547319 155547809 -21426331 - HAL1 LINE L1 -844 1663 1127 2159 99 54 0 chrX 155547809 155548103 -21426037 - AluSx SINE Alu -2 310 1 810 243 141 65 chrX 155548103 155548151 -21425989 - HAL1 LINE L1 -1380 1127 1084 988 233 132 38 chrX 155548185 155548535 -21425605 - L1MC4a LINE L1 -59 7983 7667 2306 93 6 26 chrX 155548535 155548847 -21425293 - AluSx SINE Alu -6 306 1 988 233 132 38 chrX 155548847 155548962 -21425178 - L1MC4a LINE L1 -375 7667 7564 799 165 0 0 chrX 155548962 155549083 -21425057 - FLAM_A SINE Alu -12 121 1 988 233 132 38 chrX 155549083 155550035 -21424105 - L1MC4a LINE L1 -478 7564 6613 842 92 25 17 chrX 155550039 155550158 -21423982 - FLAM_C SINE Alu 0 143 24 286 105 0 0 chrX 155550210 155550248 -21423892 - FLAM_C SINE Alu -91 42 5 251 331 45 28 chrX 155550262 155550324 -21423816 - L1MC4a LINE L1 -1215 6593 6534 2056 143 0 25 chrX 155550324 155550638 -21423502 - AluJo SINE Alu -6 306 1 251 331 45 28 chrX 155550638 155550753 -21423387 - L1MC4a LINE L1 -1274 6534 6413 880 218 0 0 chrX 155550757 155550913 -21423227 + AluJo SINE Alu 117 272 -40 4698 129 30 38 chrX 155550983 155551490 -21422650 - Tigger1 DNA MER2_type -1617 801 291 2220 108 19 7 chrX 155551490 155551797 -21422343 - AluSx SINE Alu -1 311 1 4698 129 30 38 chrX 155551797 155551809 -21422331 - Tigger1 DNA MER2_type -2127 291 280 2386 92 0 3 chrX 155551809 155552114 -21422026 - AluSx SINE Alu -8 304 1 4698 129 30 38 chrX 155552114 155552401 -21421739 - Tigger1 DNA MER2_type -2138 280 1 1126 228 103 54 chrX 155552401 155552496 -21421644 + L1ME LINE L1 3785 3874 -2272 2150 130 10 0 chrX 155552496 155552804 -21421336 + AluSx SINE Alu 1 311 -1 1126 228 103 54 chrX 155552804 155553465 -21420675 + L1ME LINE L1 3874 4501 -1645 2093 137 7 0 chrX 155553465 155553765 -21420375 + AluSx SINE Alu 1 302 -10 1126 228 103 54 chrX 155553765 155553978 -21420162 + L1ME LINE L1 4501 4702 -1444 2018 182 59 37 chrX 155553978 155554031 -21420109 - MLT1C LTR MaLR -2 465 415 1996 122 25 7 chrX 155554031 155554317 -21419823 + AluSx SINE Alu 1 291 -21 2018 182 59 37 chrX 155554317 155554718 -21419422 - MLT1C LTR MaLR -52 415 1 1126 228 103 54 chrX 155554718 155554843 -21419297 + L1ME LINE L1 4702 4819 -1327 2278 111 0 0 chrX 155554843 155555132 -21419008 - AluSx SINE Alu -23 289 1 1126 228 103 54 chrX 155555132 155555253 -21418887 + L1ME LINE L1 4819 4933 -1213 742 183 0 29 chrX 155555253 155555390 -21418750 + FLAM_A SINE Alu 1 133 0 1126 228 103 54 chrX 155555390 155555410 -21418730 + L1ME LINE L1 4933 4951 -1195 1856 146 7 29 chrX 155555410 155555718 -21418422 + AluJb SINE Alu 1 301 -11 1126 228 103 54 chrX 155555718 155555861 -21418279 + L1ME LINE L1 4951 5345 -801 1833 126 0 32 chrX 155555862 155556140 -21418000 - AluJo SINE Alu -14 298 30 233 267 187 0 chrX 155556682 155556757 -21417383 + MER5A DNA MER1_type 29 117 -72 318 26 0 0 chrX 155556804 155556843 -21417297 + (GTCTG)n Simple_repeat Simple_repeat 1 39 0 558 245 148 10 chrX 155557197 155557495 -21416645 - L2 LINE L2 -1443 1871 1533 819 237 95 35 chrX 155557630 155557968 -21416172 - MLT1C LTR MaLR -66 401 44 2310 105 0 3 chrX 155558444 155558750 -21415390 - AluSq SINE Alu -8 305 1 2351 103 0 0 chrX 155558782 155559084 -21415056 + AluSx SINE Alu 1 302 -10 947 268 239 57 chrX 155559213 155561208 -21412932 + L2 LINE L2 887 3267 -46 23 33 0 0 chrX 155562318 155562348 -21411792 + AT_rich Low_complexity Low_complexity 1 30 0 310 209 15 0 chrX 155563442 155563509 -21410631 - MLT1J LTR MaLR -443 68 1 309 227 133 31 chrX 155563773 155563901 -21410239 + LTR67 LTR ERVL 409 549 -8 320 280 45 38 chrX 155563955 155564087 -21410053 + MIR SINE MIR 8 140 -122 381 266 44 6 chrX 155564466 155564643 -21409497 + L1ME LINE L1 5321 5503 -671 692 295 101 55 chrX 155565008 155565309 -21408831 - L1MCa LINE L1 -2734 3692 3406 207 0 0 0 chrX 155565309 155565332 -21408808 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2051 125 3 7 chrX 155565334 155565630 -21408510 - AluSx SINE Alu -17 295 1 692 295 101 55 chrX 155565630 155565907 -21408233 - L1MCa LINE L1 -3020 3406 3143 2328 91 7 0 chrX 155565907 155566205 -21407935 + AluSq SINE Alu 11 310 -3 692 295 101 55 chrX 155566205 155566592 -21407548 - L1MCa LINE L1 -3283 3143 2678 30 0 0 0 chrX 155566609 155566639 -21407501 + AT_rich Low_complexity Low_complexity 1 30 0 2124 142 0 3 chrX 155566639 155566950 -21407190 - AluJb SINE Alu -2 310 1 2280 92 7 3 chrX 155567030 155567324 -21406816 - AluSq SINE Alu -18 295 1 2540 41 0 50 chrX 155567334 155567653 -21406487 - AluY SINE Alu -8 303 1 331 273 72 29 chrX 155567677 155567816 -21406324 - L1MCa LINE L1 -3976 2450 2306 411 86 129 0 chrX 155567819 155567889 -21406251 - L1MB3 LINE L1 -7 6176 6098 765 218 21 0 chrX 155567897 155568068 -21406072 + AluJb SINE Alu 137 310 0 1860 185 35 16 chrX 155568142 155568509 -21405631 + MLT1A2 LTR MaLR 1 374 0 2338 93 3 0 chrX 155568609 155568900 -21405240 + AluSp SINE Alu 1 292 -21 2403 88 0 0 chrX 155568908 155569213 -21404927 + AluSg SINE Alu 1 305 -5 208 319 76 28 chrX 155571332 155571476 -21402664 + L2 LINE L2 748 898 -2416 300 370 76 0 chrX 155571509 155571771 -21402369 + L2 LINE L2 1628 1909 -1405 791 271 29 0 chrX 155571964 155572174 -21401966 + MER58A DNA MER1_type 1 216 -8 471 251 16 49 chrX 155572365 155572485 -21401655 + LTR67 LTR ERVL 379 492 -65 633 191 30 0 chrX 155572485 155572616 -21401524 - L1MB4 LINE L1 -6 6174 6040 471 251 16 49 chrX 155572616 155572678 -21401462 + LTR67 LTR ERVL 492 555 -2 210 280 27 0 chrX 155572682 155572757 -21401383 + L2 LINE L2 2040 2116 -1198 288 185 0 0 chrX 155572819 155572873 -21401267 + L2 LINE L2 2254 2307 -1007 258 223 68 58 chrX 155573080 155573183 -21400957 + LTR16A LTR ERVL 119 222 -228 639 237 85 66 chrX 155573295 155573344 -21400796 + L2 LINE L2 2650 2697 -616 2091 141 3 3 chrX 155573344 155573642 -21400498 - AluJo SINE Alu -14 298 1 639 237 85 66 chrX 155573642 155573735 -21400405 + L2 LINE L2 2697 2787 -526 785 205 106 0 chrX 155573735 155573896 -21400244 + MER45A DNA AcHobo 1 178 0 639 237 85 66 chrX 155573896 155574188 -21399952 + L2 LINE L2 2787 3091 -222 973 233 78 24 chrX 155574237 155574610 -21399530 - HAL1b LINE L1 -941 407 15 405 0 0 0 chrX 155575720 155575765 -21398375 + (CA)n Simple_repeat Simple_repeat 1 45 0 2356 74 0 17 chrX 155575834 155576133 -21398007 - AluSg SINE Alu -16 294 1 620 136 146 18 chrX 155577340 155577450 -21396690 + FLAM_A SINE Alu 1 124 -9 758 164 86 0 chrX 155577473 155577613 -21396527 - BC200 scRNA scRNA -41 159 8 918 186 177 0 chrX 155577675 155577901 -21396239 + L1MB5 LINE L1 5909 6174 0 351 117 39 13 chrX 155578253 155578330 -21395810 - L1MB8 LINE L1 -12 6166 6088 2615 191 21 25 chrX 155578355 155578816 -21395324 - L1MB5 LINE L1 -46 6128 5668 2306 105 0 19 chrX 155578816 155579130 -21395010 - AluSx SINE Alu -3 309 2 2615 191 21 25 chrX 155579130 155579233 -21394907 - L1MB5 LINE L1 -506 5668 5566 1153 86 26 0 chrX 155580632 155580783 -21393357 - AluSg SINE Alu -155 155 1 371 290 259 11 chrX 155580965 155581417 -21392723 - L1MC4 LINE L1 -153 7889 7326 2077 136 3 10 chrX 155582029 155582330 -21391810 - AluSx SINE Alu -13 299 1 225 378 25 17 chrX 155582816 155582935 -21391205 + MIR3 SINE MIR 86 205 -3 2434 103 0 3 chrX 155583030 155583341 -21390799 - AluSx SINE Alu -1 311 2 1768 156 40 7 chrX 155583555 155583857 -21390283 - L1PB4 LINE L1 -1 6155 5844 2333 88 0 26 chrX 155584109 155584417 -21389723 + AluSx SINE Alu 1 300 -12 276 73 0 207 chrX 155584425 155584477 -21389663 + L1MB4 LINE L1 6115 6176 -4 402 21 0 0 chrX 155584477 155584524 -21389616 + (TA)n Simple_repeat Simple_repeat 1 47 0 1895 131 3 52 chrX 155584524 155584829 -21389311 - AluJb SINE Alu -22 290 1 276 73 0 207 chrX 155584829 155584857 -21389283 + L1MB4 LINE L1 6174 6179 -1 1844 112 108 4 chrX 155585019 155585296 -21388844 - AluSx SINE Alu -6 306 1 315 250 241 18 chrX 155585299 155585523 -21388617 + L2 LINE L2 2388 2661 -653 794 179 0 121 chrX 155585738 155585779 -21388361 - AluJo SINE Alu 0 312 268 2043 107 57 0 chrX 155585779 155586059 -21388081 + AluSq SINE Alu 1 296 -17 794 179 0 121 chrX 155586059 155586240 -21387900 - AluJo SINE Alu -44 268 117 381 226 194 7 chrX 155586277 155586432 -21387708 - L1MC4a LINE L1 -1639 6169 5986 783 288 41 7 chrX 155586441 155586736 -21387404 - L1MC4a LINE L1 -1872 5936 5632 2158 99 44 0 chrX 155587133 155587427 -21386713 + AluSx SINE Alu 1 307 -5 351 291 79 24 chrX 155588508 155588635 -21385505 - MIR SINE MIR -128 134 1 21 0 0 0 chrX 155591398 155591419 -21382721 + AT_rich Low_complexity Low_complexity 1 21 0 200 200 21 84 chrX 155592511 155592606 -21381534 + CT-rich Low_complexity Low_complexity 1 89 0 204 97 0 0 chrX 155596907 155596938 -21377202 + (A)n Simple_repeat Simple_repeat 1 31 0 27 49 0 0 chrX 155601618 155601659 -21372481 + GC_rich Low_complexity Low_complexity 1 41 0 42 92 0 0 chrX 155601778 155601897 -21372243 + GC_rich Low_complexity Low_complexity 1 119 0 22 56 0 0 chrX 155601993 155602029 -21372111 + GC_rich Low_complexity Low_complexity 1 36 0 2325 112 0 0 chrX 155603838 155604150 -21369990 - AluSx SINE Alu 0 312 1 283 253 20 50 chrX 155604456 155604555 -21369585 - MIR SINE MIR -60 148 53 317 316 79 0 chrX 155605335 155605474 -21368666 + MER69A DNA AcHobo 28 177 0 309 235 153 10 chrX 155606078 155606176 -21367964 + MIR SINE MIR 30 141 -67 180 283 0 0 chrX 155606534 155606580 -21367560 + L2 LINE L2 2923 2968 -346 354 327 35 0 chrX 155606793 155606906 -21367234 + L2 LINE L2 3182 3298 -15 1221 159 150 0 chrX 155606915 155607135 -21367005 + AluJo SINE Alu 39 291 -21 690 138 28 0 chrX 155607162 155607271 -21366869 + FLAM_C SINE Alu 6 117 -26 189 0 0 0 chrX 155607271 155607292 -21366848 + (T)n Simple_repeat Simple_repeat 1 21 0 885 201 11 0 chrX 155609451 155609625 -21364515 + AluJb SINE Alu 134 309 -3 1895 141 0 17 chrX 155610274 155610572 -21363568 + AluJb SINE Alu 1 293 -19 242 196 101 88 chrX 155611285 155611385 -21362755 - L1M4 LINE L1 -1715 4431 4327 2158 128 0 0 chrX 155611385 155611691 -21362449 + AluJb SINE Alu 2 307 -5 242 196 101 88 chrX 155611691 155611738 -21362402 - L1M4 LINE L1 -1819 4327 4282 2268 91 3 7 chrX 155611739 155612046 -21362094 - AluSq SINE Alu -7 306 1 2219 107 0 0 chrX 155612061 155612359 -21361781 - AluSq SINE Alu -15 298 1 2242 103 0 16 chrX 155612359 155612669 -21361471 - AluSx SINE Alu -6 306 1 421 216 216 0 chrX 155612671 155612861 -21361279 - L1MEc LINE L1 -4073 2323 2093 350 325 75 6 chrX 155612863 155613023 -21361117 - L1MEc LINE L1 -6102 294 124 2356 74 0 17 chrX 155713642 155713941 -21260199 + AluSg SINE Alu 1 294 -16 423 0 0 0 chrX 155714010 155714057 -21260083 + (TG)n Simple_repeat Simple_repeat 1 47 0 973 233 78 24 chrX 155715166 155715539 -21258601 + HAL1b LINE L1 15 407 -941 639 237 85 66 chrX 155715588 155715880 -21258260 - L2 LINE L2 -222 3091 2806 785 205 106 0 chrX 155715880 155716041 -21258099 - MER45A DNA AcHobo 0 178 1 639 237 85 66 chrX 155716041 155716134 -21258006 - L2 LINE L2 -507 2806 2697 2101 141 3 3 chrX 155716134 155716433 -21257707 + AluJo SINE Alu 1 299 -13 639 237 85 66 chrX 155716433 155716482 -21257658 - L2 LINE L2 -616 2697 2650 258 223 68 58 chrX 155716594 155716697 -21257443 - LTR16A LTR ERVL -228 222 119 288 185 0 0 chrX 155716904 155716958 -21257182 - L2 LINE L2 -1007 2307 2254 210 280 27 0 chrX 155717020 155717095 -21257045 - L2 LINE L2 -1198 2116 2040 471 251 16 49 chrX 155717099 155717161 -21256979 - LTR67 LTR ERVL -2 555 492 633 191 30 0 chrX 155717161 155717292 -21256848 + L1MB4 LINE L1 6040 6174 -6 471 251 16 49 chrX 155717292 155717412 -21256728 - LTR67 LTR ERVL -65 492 379 791 271 29 0 chrX 155717603 155717813 -21256327 - MER58A DNA MER1_type -8 216 1 300 370 76 0 chrX 155718006 155718268 -21255872 - L2 LINE L2 -1405 1909 1628 208 319 76 28 chrX 155718301 155718445 -21255695 - L2 LINE L2 -2416 898 748 2403 88 0 0 chrX 155720564 155720869 -21253271 - AluSg SINE Alu -5 305 1 2338 93 3 0 chrX 155720877 155721168 -21252972 - AluSp SINE Alu -21 292 1 1860 185 35 16 chrX 155721268 155721635 -21252505 - MLT1A2 LTR MaLR 0 374 1 764 218 21 0 chrX 155721709 155721880 -21252260 - AluJb SINE Alu 0 310 137 411 86 129 0 chrX 155721888 155721958 -21252182 + L1MB3 LINE L1 6098 6176 -7 331 273 72 29 chrX 155721961 155722100 -21252040 + L1MCa LINE L1 2306 2450 -3976 1828 151 0 63 chrX 155722124 155722456 -21251684 + AluJo SINE Alu 1 311 -1 317 265 75 27 chrX 155722461 155722608 -21251532 + L1MC4a LINE L1 5758 5911 -1897 1046 154 28 28 chrX 155722696 155722910 -21251230 + L1MB3 LINE L1 5951 6164 -19 2465 49 0 3 chrX 155722919 155723207 -21250933 - AluY SINE Alu -24 287 1 28 0 0 0 chrX 155723209 155723237 -21250903 + AT_rich Low_complexity Low_complexity 1 28 0 2403 79 0 3 chrX 155723256 155723546 -21250594 - AluSc SINE Alu -20 289 1 2329 114 0 0 chrX 155723649 155723948 -21250192 - AluSq SINE Alu -14 299 1 2316 116 3 0 chrX 155723957 155724260 -21249880 - AluSx SINE Alu -8 304 1 974 132 0 107 chrX 155724523 155724720 -21249420 - FRAM SINE Alu 0 176 1 287 232 116 0 chrX 155725095 155725164 -21248976 + L2 LINE L2 3196 3272 0 467 137 0 0 chrX 155725440 155725513 -21248627 - Alu SINE Alu -6 306 234 242 296 65 12 chrX 155925581 155925750 -21048390 - L1MDa LINE L1 -2382 4044 3867 1133 153 11 0 chrX 155925764 155925953 -21048187 - Tigger2 DNA MER2_type 0 2718 2528 3873 117 9 27 chrX 155925961 155926291 -21047849 - Tigger2 DNA MER2_type -315 2403 2089 4034 34 0 0 chrX 155926291 155926767 -21047373 - L1PA4 LINE L1 -8 6147 5672 3873 117 9 27 chrX 155926767 155927096 -21047044 - Tigger2 DNA MER2_type -629 2089 1756 932 140 59 21 chrX 155927134 155927320 -21046820 - MER46A DNA MER2_type 0 236 44 821 237 71 15 chrX 155927434 155927886 -21046254 - L1MDa LINE L1 -3757 2694 2193 363 44 0 0 chrX 155927991 155928036 -21046104 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 864 132 31 0 chrX 155928041 155928170 -21045970 - FRAM SINE Alu -34 142 10 400 293 87 38 chrX 155928217 155928664 -21045476 - L1MDa LINE L1 -4579 2028 1560 1223 244 105 35 chrX 155928679 155928894 -21045246 + MLT1E3 LTR MaLR 1 200 -424 6992 52 20 0 chrX 155928894 155930050 -21044090 - L1PA6 LINE L1 0 6154 4987 1223 244 105 35 chrX 155930050 155930343 -21043797 + MLT1E3 LTR MaLR 200 539 -85 5711 72 10 15 chrX 155930344 155931201 -21042939 - MER11C LTR ERVK 0 1071 239 3171 49 5 0 chrX 155931307 155931717 -21042423 - MER11C LTR ERVK -659 412 1 537 112 11 0 chrX 155931717 155931806 -21042334 + MLT1E3 LTR MaLR 535 624 0 233 294 22 0 chrX 155931825 155931917 -21042223 - L1MDa LINE L1 -5098 1328 1235 315 284 91 0 chrX 155931918 155932006 -21042134 - L2 LINE L2 -29 3284 3189 * 679 332 92 42 chrX 155932004 155932879 -21041261 + L2 LINE L2 2354 3272 0 480 336 130 61 chrX 155932886 155933380 -21040760 - L3 LINE CR1 -860 717 190 312 355 99 9 chrX 155934022 155934233 -21039907 + L2 LINE L2 2511 2740 -574 233 299 81 0 chrX 155934203 155934290 -21039850 + L2 LINE L2 2978 3071 -201 * 335 308 117 0 chrX 155934479 155934599 -21039541 + L2 LINE L2 2921 3054 -218 2891 242 65 57 chrX 155934626 155935449 -21038691 - L2 LINE L2 -6 3307 2492 1760 136 221 8 chrX 155935449 155935802 -21038338 - MSTA LTR MaLR 0 428 1 9843 107 16 61 chrX 155935804 155937454 -21036686 - MSTA-int LTR MaLR -2 1578 3 1591 166 57 38 chrX 155937456 155937824 -21036316 - THE1C LTR MaLR 0 375 1 2891 242 65 57 chrX 155937824 155938119 -21036021 - L2 LINE L2 -821 2492 2150 550 288 91 50 chrX 155938352 155938579 -21035561 - MER102b DNA MER1_type -1096 332 87 1353 262 60 22 chrX 155938579 155939026 -21035114 - LTR16B LTR ERVL 0 464 1 550 288 91 50 chrX 155939026 155939117 -21035023 - MER102b DNA MER1_type -1341 87 1 2464 278 68 22 chrX 155939480 155940911 -21033229 + L1M4 LINE L1 2519 4015 -2131 298 329 63 11 chrX 155940927 155941196 -21032944 + L1MEc LINE L1 880 1247 -5360 1548 81 9 7 chrX 155941204 155941422 -21032718 + L1PA4 LINE L1 5436 5662 -492 1182 74 6 0 chrX 155941422 155941585 -21032555 + L1PA4 LINE L1 5992 6155 0 1548 81 9 7 chrX 155941585 155941604 -21032536 + L1PA4 LINE L1 5662 5679 -475 21 0 0 0 chrX 155941675 155941696 -21032444 + AT_rich Low_complexity Low_complexity 1 21 0 373 274 19 19 chrX 155941981 155942087 -21032053 + MER5B DNA MER1_type 72 177 -1 3697 60 8 0 chrX 155942579 155943063 -21031077 + L1PA7 LINE L1 5662 6149 -5 1616 256 81 29 chrX 155943119 155943839 -21030301 + L1M4 LINE L1 3699 4455 -1691 437 220 60 90 chrX 155943834 155944049 -21030091 - L1ME LINE L1 -670 5496 5287 * 2292 96 0 3 chrX 155944049 155944342 -21029798 - AluSg SINE Alu -18 292 1 437 220 60 90 chrX 155944342 155944418 -21029722 - L1ME LINE L1 -879 5287 5210 1512 188 15 6 chrX 155944426 155944766 -21029374 - L1 LINE L1 -882 5088 4746 185 355 73 36 chrX 155945238 155945348 -21028792 + L2 LINE L2 3115 3228 -44 2588 27 3 0 chrX 155945353 155945646 -21028494 + AluY SINE Alu 1 294 -17 228 240 0 0 chrX 155946240 155946290 -21027850 + (CA)n Simple_repeat Simple_repeat 2 51 0 525 230 0 9 chrX 155946631 155946744 -21027396 - MIR SINE MIR -74 188 77 1665 123 19 109 chrX 155946863 155947229 -21026911 - MER7A DNA MER2_type -15 331 1 238 122 0 24 chrX 155947748 155947789 -21026351 + U6 snRNA snRNA 2 41 -66 353 109 16 16 chrX 155947790 155947854 -21026286 - L1MB2 LINE L1 -7 6164 6101 259 191 15 29 chrX 155948005 155948073 -21026067 + L1MCb LINE L1 498 564 -5481 1227 199 33 119 chrX 155948182 155948609 -21025531 - MLT1C LTR MaLR 0 390 1 1428 246 34 32 chrX 155948614 155949119 -21025021 + L1MCb LINE L1 558 1063 -4982 * 2902 157 50 0 chrX 155949113 155949687 -21024453 - L1 LINE L1 -1496 4650 4048 889 121 0 0 chrX 155949687 155949828 -21024312 + L1 LINE L1 4665 4805 -1341 180 0 0 0 chrX 155949840 155949860 -21024280 + (CA)n Simple_repeat Simple_repeat 2 21 0 998 212 25 25 chrX 155949865 155950148 -21023992 + L1MCb LINE L1 1540 1822 -4742 1426 236 11 26 chrX 155950274 155950411 -21023729 - L1 LINE L1 -1616 4354 4216 6998 61 3 0 chrX 155950411 155951628 -21022512 + L1PA7 LINE L1 4933 6152 -2 1426 236 11 26 chrX 155951628 155951943 -21022197 - L1 LINE L1 -1754 4216 3909 2735 262 34 18 chrX 155952060 155953180 -21020960 - L1M4c LINE L1 -4535 1778 777 1048 294 64 17 chrX 155953381 155953767 -21020373 - L1 LINE L1 -5218 673 1 2680 252 33 71 chrX 155953773 155954288 -21019852 - L2 LINE L2 -1609 1705 1241 2426 169 37 19 chrX 155954288 155954825 -21019315 + L1MA8 LINE L1 5742 6288 -3 2680 252 33 71 chrX 155954825 155955255 -21018885 - L2 LINE L2 -2073 1241 796 334 253 11 33 chrX 155955345 155955436 -21018704 - L2 LINE L2 -2771 543 455 329 316 43 43 chrX 155955539 155955726 -21018414 - L2 LINE L2 -683 2631 2445 709 331 129 40 chrX 155956375 155956944 -21017196 - L2 LINE L2 0 3272 2649 394 100 0 122 chrX 155957049 155957084 -21017056 - MER58 DNA MER1_type 0 2420 2382 1500 210 55 6 chrX 155957084 155957432 -21016708 + MLT1A1 LTR MaLR 1 365 0 394 100 0 122 chrX 155957432 155957486 -21016654 - MER58 DNA MER1_type -38 2382 2342 1709 189 44 30 chrX 155957490 155957855 -21016285 - MLT1A2 LTR MaLR 0 374 5 1766 278 72 37 chrX 155957860 155958275 -21015865 - MLT1A2-int LTR MaLR -1 1370 971 1491 142 0 0 chrX 155958275 155958487 -21015653 + AluSq SINE Alu 55 266 -47 1766 278 72 37 chrX 155958487 155959300 -21014840 - MLT1A2-int LTR MaLR -400 971 1 366 123 0 0 chrX 155959355 155959412 -21014728 + (TG)n Simple_repeat Simple_repeat 2 58 0 1248 223 190 31 chrX 155959414 155959799 -21014341 - MLT2B1 LTR ERVL -74 446 1 346 280 8 17 chrX 155959804 155959922 -21014218 - MER58 DNA MER1_type -92 123 7 396 0 0 0 chrX 155960042 155960086 -21014054 + (CA)n Simple_repeat Simple_repeat 2 45 0 517 190 25 111 chrX 155960480 155960759 -21013381 - L1M4b LINE L1 -5399 1460 1206 581 171 9 0 chrX 155960830 155960935 -21013205 + MER20 DNA MER1_type 1 106 -113 503 270 30 98 chrX 155961011 155961142 -21012998 - L1M4b LINE L1 -5667 1188 1050 2376 154 73 2 chrX 155961142 155961537 -21012603 + MSTB LTR MaLR 1 423 -3 503 270 30 98 chrX 155961537 155961742 -21012398 - L1M4b LINE L1 -5805 1050 875 337 292 13 52 chrX 155961895 155962049 -21012091 - L1M4b LINE L1 -6566 293 146 2599 197 37 13 chrX 155962067 155962692 -21011448 - L1MA9 LINE L1 -38 6274 5635 2142 151 7 6 chrX 155962692 155963362 -21010778 + L1MA9 LINE L1 4940 5610 -702 387 208 92 25 chrX 155963360 155963480 -21010660 - L1M4b LINE L1 -6702 157 30 * 351 353 33 0 chrX 155963551 155963673 -21010467 + MIR SINE MIR 29 154 -108 256 298 33 61 chrX 155963724 155963905 -21010235 - L1ME LINE L1 -313 5808 5633 3527 107 16 0 chrX 155963905 155964419 -21009721 + L1PB3 LINE L1 5633 6154 0 22 35 0 0 chrX 155964419 155964448 -21009692 + AT_rich Low_complexity Low_complexity 1 29 0 418 278 114 21 chrX 155964464 155965002 -21009138 - L1ME LINE L1 -812 5334 5058 240 188 0 47 chrX 155965178 155965242 -21008898 - L1MC4 LINE L1 0 8042 7982 2051 134 134 8 chrX 155965242 155965622 -21008518 - MSTA LTR MaLR 0 428 1 9538 123 16 44 chrX 155965630 155967253 -21006887 - MSTA-int LTR MaLR 0 1580 3 2078 133 135 0 chrX 155967255 155967632 -21006508 - MSTA LTR MaLR 0 428 1 399 299 30 5 chrX 155967790 155967991 -21006149 - L1ME LINE L1 -1218 4928 4723 4077 208 72 22 chrX 155968467 155970509 -21003631 + L1MD2 LINE L1 4016 6349 -10 36200 28 16 1 chrX 155970702 155976734 -20997406 + L1HS LINE L1 1 6155 0 395 162 0 15 chrX 155976802 155976870 -20997270 - MER58A DNA MER1_type 0 224 158 237 277 98 18 chrX 155976871 155976983 -20997157 - MER58A DNA MER1_type 0 121 1 23 0 0 0 chrX 155977096 155977119 -20997021 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 45 0 chrX 155977144 155977232 -20996908 + L1ME4a LINE L1 5527 5618 -503 28 29 0 0 chrX 155977440 155977475 -20996665 + AT_rich Low_complexity Low_complexity 1 35 0 283 257 73 55 chrX 155977480 155977698 -20996442 + L1ME4a LINE L1 5868 6089 -32 350 262 255 21 chrX 155977968 155978113 -20996027 + MIR3 SINE MIR 25 203 -5 351 271 35 58 chrX 155979025 155979121 -20995019 + MIR SINE MIR 5 101 -107 216 0 0 0 chrX 155979121 155979145 -20994995 + (CA)n Simple_repeat Simple_repeat 2 25 0 351 271 35 58 chrX 155979145 155979182 -20994958 + MIR SINE MIR 101 137 -71 329 332 36 27 chrX 155979291 155979463 -20994677 - MIR SINE MIR -62 146 19 3737 14 0 2 chrX 155980153 155980584 -20993556 + L1PA3 LINE L1 5726 6155 0 2294 134 68 24 chrX 155981256 155981666 -20992474 - MSTA LTR MaLR 0 428 1 6477 27 0 0 chrX 155981693 155982518 -20991622 + L1PA3 LINE L1 5347 6171 0 22 88 0 0 chrX 155982550 155982607 -20991533 + AT_rich Low_complexity Low_complexity 1 57 0 703 262 21 37 chrX 155983310 155983501 -20990639 + MIR SINE MIR 2 189 -73 221 234 0 0 chrX 155983571 155983618 -20990522 + MIR SINE MIR 216 262 0 381 307 61 24 chrX 155986248 155986460 -20987680 + L1M4b LINE L1 17 236 -6623 42329 36 2 1 chrX 155986588 155992745 -20981395 + L1PA3 LINE L1 9 6170 0 703 309 20 37 chrX 155992900 155993253 -20980887 + L1M4b LINE L1 853 1199 -5656 1843 220 62 34 chrX 155993256 155993717 -20980423 + L1M4b LINE L1 1344 1834 -5091 1652 185 62 67 chrX 155993717 155994106 -20980034 - MLT1B LTR MaLR 0 390 4 1843 220 62 34 chrX 155994106 155994343 -20979797 + L1M4b LINE L1 1834 2063 -4862 * 7838 175 11 15 chrX 155994336 155996026 -20978114 + L1P4 LINE L1 3739 5420 -745 1924 153 0 13 chrX 155996026 155996334 -20977806 + AluSx SINE Alu 1 304 -8 7838 175 11 15 chrX 155996334 155996377 -20977763 + L1P4 LINE L1 5420 5462 -703 274 29 0 0 chrX 155996458 155996492 -20977648 - MADE1 DNA Mariner 0 80 47 2886 279 41 9 chrX 155996559 155997594 -20976546 + L1MA4A LINE L1 821 1778 -5431 4837 157 26 24 chrX 155997595 155998247 -20975893 + L1PB4 LINE L1 4232 4881 -1275 1235 160 0 19 chrX 155998247 155998460 -20975680 - L1PA16 LINE L1 -1 6165 5957 4837 157 26 24 chrX 155998460 155999280 -20974860 + L1PB4 LINE L1 4881 5710 -446 1306 137 80 145 chrX 155999280 155999487 -20974653 - THE1C LTR MaLR 0 375 205 14107 54 2 0 chrX 155999487 156002065 -20972075 + L1PA5 LINE L1 3571 6154 0 1306 137 80 145 chrX 156002065 156002258 -20971882 - THE1C LTR MaLR -170 205 1 2490 154 32 0 chrX 156002258 156002693 -20971447 + L1PB4 LINE L1 5706 6154 -2 13207 186 27 32 chrX 156002711 156004135 -20970005 + L1MA4A LINE L1 2070 3500 -3865 408 20 0 0 chrX 156004135 156004184 -20969956 + (CA)n Simple_repeat Simple_repeat 2 50 0 13207 186 27 32 chrX 156004184 156004672 -20969468 + L1MA4A LINE L1 3500 3989 -3376 2374 76 3 10 chrX 156004672 156004973 -20969167 + AluSp SINE Alu 1 299 -14 13207 186 27 32 chrX 156004973 156007896 -20966244 + L1MA4A LINE L1 3989 6895 -470 2268 93 7 7 chrX 156007896 156008197 -20965943 + AluSx SINE Alu 1 301 -11 13207 186 27 32 chrX 156008197 156008666 -20965474 + L1MA4A LINE L1 6895 7365 0 669 241 56 9 chrX 156008659 156008891 -20965249 + L1M4c LINE L1 1591 1833 -4551 * 1913 237 79 47 chrX 156009066 156010381 -20963759 + L1M4c LINE L1 1898 3211 -3171 7177 221 23 34 chrX 156010381 156013586 -20960554 + L1MA8 LINE L1 9 6363 -132 10546 131 29 4 chrX 156013589 156015306 -20958834 + Tigger2 DNA MER2_type 1 1759 -959 250 270 16 16 chrX 156015319 156015382 -20958758 - L3 LINE CR1 -1193 384 322 3030 23 0 0 chrX 156015616 156015964 -20958176 - L1PA4 LINE L1 -8 6147 5800 3184 29 0 0 chrX 156015964 156016349 -20957791 + L1P2 LINE L1 5380 5764 -391 7764 110 24 5 chrX 156016474 156017641 -20956499 + THE1B-int LTR MaLR 392 1580 0 2035 138 96 3 chrX 156017641 156017974 -20956166 + THE1B LTR MaLR 1 364 0 310 228 0 13 chrX 156017977 156018056 -20956084 + L1M1 LINE L1 3542 3619 -3946 * 1154 277 111 21 chrX 156018054 156018823 -20955317 + L1M1 LINE L1 4140 4977 -2588 4185 121 17 5 chrX 156018826 156019489 -20954651 + L1PB3 LINE L1 5484 6154 0 830 244 29 0 chrX 156019533 156019742 -20954398 + MER58C DNA MER1_type 1 215 0 2311 90 0 26 chrX 156021125 156021436 -20952704 + AluSx SINE Alu 1 303 -9 556 269 110 102 chrX 156022554 156023237 -20950903 - L1M2 LINE L1 -5582 1267 580 508 241 0 0 chrX 156023434 156023575 -20950565 - L1M4 LINE L1 -1055 5091 4951 2851 78 0 0 chrX 156023576 156023948 -20950192 - L1PA5 LINE L1 -3 6151 5780 15295 44 1 1 chrX 156024048 156026052 -20948088 + L1P LINE L1 3081 5085 -1061 4146 30 6 0 chrX 156026152 156026691 -20947449 - L1P LINE L1 -3231 2915 2374 1845 208 26 26 chrX 156026675 156027170 -20946970 - L1M4 LINE L1 -2227 3919 3425 * 260 302 0 0 chrX 156027385 156027471 -20946669 - L1MEc LINE L1 -4777 1619 1534 986 209 63 75 chrX 156027516 156027851 -20946289 + MLT1D LTR MaLR 5 335 -170 17706 90 17 33 chrX 156027951 156030830 -20943310 - L1P LINE L1 -1378 4768 1937 2289 161 28 0 chrX 156030930 156031390 -20942750 - L1 LINE L1 -1548 4598 4126 512 137 0 0 chrX 156031397 156031492 -20942648 - L1 LINE L1 -1644 4502 4408 225 0 0 0 chrX 156031588 156031613 -20942527 + (TG)n Simple_repeat Simple_repeat 2 26 0 352 200 38 0 chrX 156031673 156031753 -20942387 + L1PA16 LINE L1 6081 6163 -3 796 283 345 22 chrX 156033509 156034155 -20939985 + L2 LINE L2 646 1500 -1814 1568 192 158 22 chrX 156034396 156034807 -20939333 - MLT1C LTR MaLR 0 467 1 216 86 0 0 chrX 156035010 156035045 -20939095 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3312 252 122 43 chrX 156035046 156036074 -20938066 + L2 LINE L2 1712 2879 -434 339 25 0 0 chrX 156036074 156036114 -20938026 + (TC)n Simple_repeat Simple_repeat 2 41 0 3312 252 122 43 chrX 156036114 156036393 -20937747 + L2 LINE L2 2879 3135 -178 339 288 0 23 chrX 156036397 156036529 -20937611 - MER94 DNA DNA 0 134 6 299 242 44 11 chrX 156036534 156036625 -20937515 + L2 LINE L2 3132 3225 -88 21 0 0 0 chrX 156037274 156037295 -20936845 + GC_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chrX 156038174 156038207 -20935933 + AT_rich Low_complexity Low_complexity 1 33 0 562 278 21 36 chrX 156038553 156038747 -20935393 - MIR SINE MIR -69 193 3 216 254 0 48 chrX 156038787 156038850 -20935290 + L2 LINE L2 3205 3264 -8 467 294 98 6 chrX 156039084 156039247 -20934893 + MIR SINE MIR 6 183 -79 690 191 176 11 chrX 156039548 156039736 -20934404 - MIR SINE MIR -30 232 14 1430 138 21 38 chrX 156040649 156040889 -20933251 + MER46A DNA MER2_type 1 236 0 266 196 0 0 chrX 156041200 156041256 -20932884 - L1ME2 LINE L1 -6 6158 6103 * 583 165 0 0 chrX 156041252 156041349 -20932791 - L1ME LINE L1 -593 5573 5477 250 310 38 121 chrX 156041663 156041748 -20932392 - L2 LINE L2 -13 3259 3169 1618 157 0 72 chrX 156041748 156041888 -20932252 + AluJo SINE Alu 1 107 -205 2060 118 3 7 chrX 156041888 156042176 -20931964 + AluSx SINE Alu 1 287 -25 1618 157 0 72 chrX 156042176 156042353 -20931787 + AluJo SINE Alu 107 295 -17 250 310 38 121 chrX 156042353 156042632 -20931508 - L2 LINE L2 -103 3169 2925 410 205 176 21 chrX 156042718 156042957 -20931183 + L1ME4a LINE L1 5843 6118 -3 188 236 34 124 chrX 156042977 156043041 -20931099 - L2 LINE L2 -1106 2208 2153 1516 188 30 16 chrX 156043041 156043344 -20930796 + AluJb SINE Alu 1 307 -5 188 236 34 124 chrX 156043344 156043368 -20930772 - L2 LINE L2 -1161 2153 2128 831 169 0 0 chrX 156043695 156043819 -20930321 - AluJb SINE Alu -23 289 166 10348 53 6 52 chrX 156044039 156045468 -20928672 - SVA Other Other 0 1386 24 367 307 130 32 chrX 156045553 156045805 -20928335 - L1MEd LINE L1 -1139 1351 983 1769 111 0 24 chrX 156046091 156046344 -20927796 - AluSx SINE Alu -65 247 1 324 125 16 16 chrX 156047200 156047264 -20926876 - L1P LINE L1 -2052 4094 4031 245 232 62 45 chrX 156047341 156047453 -20926687 + L1ME LINE L1 5384 5497 -669 2382 15 0 0 chrX 156048137 156048434 -20925706 + AluY SINE Alu 21 317 0 13331 186 42 7 chrX 156049059 156052488 -20921652 + L1M1 LINE L1 2690 6238 -767 1887 166 0 3 chrX 156052588 156052878 -20921262 - AluJb SINE Alu -22 290 2 1185 193 135 24 chrX 156053529 156053764 -20920376 - L1M4 LINE L1 -832 5314 5106 1706 73 68 0 chrX 156053764 156054012 -20920128 + L1PA8 LINE L1 5905 6169 -3 1185 193 135 24 chrX 156054012 156054190 -20919950 - L1M4 LINE L1 -1040 5106 4855 233 329 0 0 chrX 156054244 156054329 -20919811 + L1ME LINE L1 374 458 -5938 427 153 38 137 chrX 156054656 156054787 -20919353 + L1ME LINE L1 870 987 -5422 440 300 187 4 chrX 156054826 156055083 -20919057 + L1ME LINE L1 3394 3697 -2709 987 121 0 0 chrX 156055100 156055240 -20918900 - FLAM_C SINE Alu -3 140 1 409 271 28 19 chrX 156055302 156055409 -20918731 - MLT1I LTR MaLR -93 316 209 254 206 41 72 chrX 156055666 156055763 -20918377 + L1P LINE L1 3589 3682 -2464 1049 267 129 28 chrX 156056050 156056940 -20917200 + L1ME LINE L1 3974 4953 -1453 267 312 60 32 chrX 156056957 156057207 -20916933 + L1ME LINE L1 4995 5251 -1155 354 233 181 16 chrX 156057686 156057879 -20916261 + L1ME LINE L1 5841 6065 -316 487 271 31 0 chrX 156057934 156058063 -20916077 - MLT1L LTR MaLR -72 543 411 239 316 51 13 chrX 156058086 156058165 -20915975 - L2 LINE L2 -36 3236 3155 765 228 123 9 chrX 156058283 156058502 -20915638 - MIR SINE MIR -15 247 4 823 257 59 52 chrX 156058908 156059196 -20914944 - L2 LINE L2 -475 2839 2550 222 91 0 0 chrX 156059199 156059232 -20914908 + (CA)n Simple_repeat Simple_repeat 2 34 0 914 154 148 0 chrX 156059234 156059432 -20914708 - AluJo SINE Alu 0 311 89 722 299 95 28 chrX 156059439 156059827 -20914313 - L2 LINE L2 -776 2538 2125 210 311 84 42 chrX 156059871 156060061 -20914079 + L2 LINE L2 1864 2061 -1253 320 291 29 10 chrX 156060349 156060452 -20913688 + L3 LINE CR1 1158 1262 -315 287 204 172 11 chrX 156062281 156062374 -20911766 + MIR SINE MIR 86 193 -69 21 57 0 0 chrX 156063833 156063868 -20910272 + AT_rich Low_complexity Low_complexity 1 35 0 299 24 0 24 chrX 156064327 156064368 -20909772 + (TTA)n Simple_repeat Simple_repeat 1 40 0 236 375 162 13 chrX 156064852 156065087 -20909053 + L3 LINE CR1 36 305 -1272 241 232 153 23 chrX 156065166 156065343 -20908797 + L1M4 LINE L1 5195 5394 -752 193 282 0 126 chrX 156065823 156065926 -20908214 - L2 LINE L2 0 3272 3183 287 278 22 0 chrX 156066023 156066113 -20908027 + L2 LINE L2 3180 3271 -1 290 287 46 36 chrX 156067535 156067838 -20906302 - L1ME LINE L1 -541 5621 5316 2493 63 0 0 chrX 156067845 156068146 -20905994 - AluY SINE Alu -10 301 1 598 148 0 47 chrX 156068192 156068341 -20905799 - L1MB8 LINE L1 -9 6169 6028 1121 36 0 78 chrX 156068344 156068510 -20905630 + L1PA5 LINE L1 5993 6145 -9 2626 197 24 7 chrX 156068530 156069708 -20904432 - L1MB5 LINE L1 -134 6109 4881 2041 200 43 22 chrX 156069828 156070364 -20903776 - L1MB5 LINE L1 -1341 4874 4328 207 0 0 0 chrX 156070364 156070387 -20903753 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4997 56 0 0 chrX 156070394 156071037 -20903103 - L1PA7 LINE L1 -22 6132 5490 1085 128 0 0 chrX 156071037 156071193 -20902947 - AluSg/x SINE Alu -10 302 147 705 22 0 0 chrX 156071193 156071282 -20902858 - L1P3 LINE L1 -663 5491 5403 538 42 0 0 chrX 156071281 156071353 -20902787 + L1P LINE L1 4598 4669 -1477 * 2032 224 43 88 chrX 156071348 156072799 -20901341 - L1MB5 LINE L1 -2907 3308 2117 2273 114 0 0 chrX 156072799 156073097 -20901043 - AluSx SINE Alu -12 300 3 2032 224 43 88 chrX 156073097 156073757 -20900383 - L1MB5 LINE L1 -4098 2117 1429 * 5806 153 23 4 chrX 156073746 156075587 -20898553 - L1MA3 LINE L1 0 6305 4426 204 40 0 0 chrX 156075588 156075613 -20898527 + (TA)n Simple_repeat Simple_repeat 2 26 0 2430 116 8 8 chrX 156075615 156075978 -20898162 + L1PB3 LINE L1 5790 6152 -2 3054 127 21 18 chrX 156075994 156076161 -20897979 + L1P4 LINE L1 5195 5360 -806 2111 118 0 3 chrX 156076161 156076449 -20897691 + AluSg SINE Alu 1 287 -23 3054 127 21 18 chrX 156076449 156076855 -20897285 + L1P4 LINE L1 5360 5775 -391 406 202 48 32 chrX 156076853 156076977 -20897163 - L1MC3 LINE L1 -704 7081 6956 * 238 291 0 0 chrX 156076977 156077032 -20897108 + Tigger5 DNA MER2_type 1 55 -2268 * 346 192 14 14 chrX 156077001 156077074 -20897066 + Tigger5 DNA MER2_type 2251 2323 0 231 100 75 0 chrX 156077074 156077114 -20897026 + Tigger5 DNA MER2_type 13 55 -2268 * 508 202 39 0 chrX 156077106 156077210 -20896930 + Tigger5 DNA MER2_type 2215 2322 -1 2481 213 75 20 chrX 156077211 156077854 -20896286 - L1MC3 LINE L1 -832 6953 6276 276 326 73 5 chrX 156077978 156078361 -20895779 - L1M4 LINE L1 -2665 3481 3073 496 157 10 10 chrX 156078403 156078505 -20895635 - L1MB2 LINE L1 0 6171 6070 230 309 28 28 chrX 156078541 156078722 -20895418 - L1M4 LINE L1 -3092 3054 2874 22 0 0 0 chrX 156078722 156078744 -20895396 + AT_rich Low_complexity Low_complexity 1 22 0 2049 154 28 74 chrX 156078747 156079203 -20894937 - L1MA6 LINE L1 -9 6291 5860 438 184 101 14 chrX 156079310 156079466 -20894674 + LTR65 LTR ERV1 344 550 -119 23 33 0 0 chrX 156080948 156080978 -20893162 + AT_rich Low_complexity Low_complexity 1 30 0 436 266 9 0 chrX 156080989 156081102 -20893038 - MIR SINE MIR -2 260 147 2099 126 7 3 chrX 156081156 156081457 -20892683 + AluJb SINE Alu 1 302 -10 2337 95 7 0 chrX 156082916 156083222 -20890918 + AluSq SINE Alu 1 308 -5 258 238 57 9 chrX 156083286 156083391 -20890749 + L1M4 LINE L1 3839 3948 -2198 * 3030 170 55 2 chrX 156083375 156083496 -20890644 + L1MA9 LINE L1 5662 5775 -537 222 37 0 0 chrX 156083496 156083523 -20890617 + (TA)n Simple_repeat Simple_repeat 2 28 0 3030 170 55 2 chrX 156083523 156083983 -20890157 + L1MA9 LINE L1 5775 6274 -38 1154 249 98 18 chrX 156084045 156084434 -20889706 + L2 LINE L2 2435 2854 -460 638 293 94 18 chrX 156084436 156084836 -20889304 + L2 LINE L2 2709 3130 -183 1375 236 151 61 chrX 156084836 156085618 -20888522 + L1M3e LINE L1 176 1001 -6029 640 194 7 22 chrX 156085617 156085756 -20888384 + L1M3e LINE L1 3629 3765 -3341 * 449 186 12 12 chrX 156085750 156085836 -20888304 - L1 LINE L1 -2049 4097 4012 * 184 242 32 16 chrX 156085852 156085914 -20888226 - MIR SINE MIR -14 248 186 1771 49 113 0 chrX 156085938 156086185 -20887955 - L1PA5 LINE L1 -2 6152 5878 2584 249 55 72 chrX 156086185 156086761 -20887379 - L1M4 LINE L1 -5454 1088 537 2440 62 3 20 chrX 156086761 156087065 -20887075 - AluSp SINE Alu -14 299 1 2584 249 55 72 chrX 156087065 156087587 -20886553 - L1M4 LINE L1 -6005 537 8 367 255 77 82 chrX 156088121 156088317 -20885823 + MLT1J LTR MaLR 243 437 -74 804 78 0 0 chrX 156088350 156088466 -20885674 - LTR9B LTR ERV1 -84 560 445 5730 105 28 4 chrX 156088498 156089830 -20884310 - L1PA14 LINE L1 -13 6148 4774 2088 133 0 0 chrX 156089830 156090124 -20884016 - AluSx SINE Alu 0 312 19 5730 105 28 4 chrX 156090124 156090680 -20883460 - L1PA14 LINE L1 -1387 4774 4233 2295 88 3 0 chrX 156091371 156091667 -20882473 + AluSp SINE Alu 1 297 -16 1330 150 5 0 chrX 156093932 156094145 -20879995 - L1PA14 LINE L1 -1902 4244 4031 318 270 33 27 chrX 156094147 156094333 -20879807 + L1MC/D LINE L1 5311 5497 -624 3312 140 9 5 chrX 156094703 156095269 -20878871 + L1MA4A LINE L1 5556 6123 -180 318 279 0 0 chrX 156095272 156095351 -20878789 + L1MA4A LINE L1 6189 6267 -36 2090 88 3 61 chrX 156095391 156095720 -20878420 + AluY SINE Alu 1 310 -1 1412 228 10 60 chrX 156095732 156096118 -20878022 + MLT1E3 LTR MaLR 258 624 0 367 350 32 0 chrX 156097186 156097406 -20876734 - L1MC/D LINE L1 -2015 5793 5567 42676 34 22 1 chrX 156097406 156103432 -20870708 - L1PA2 LINE L1 0 6155 1 331 318 61 0 chrX 156103458 156103606 -20870534 - L1MC/D LINE L1 -756 5390 5234 2451 167 19 2 chrX 156103933 156104352 -20869788 + MSTB LTR MaLR 1 426 0 2189 159 60 27 chrX 156104356 156104770 -20869370 - MSTA LTR MaLR 0 428 1 200 118 29 0 chrX 156104909 156104943 -20869197 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 627 296 25 20 chrX 156105072 156105275 -20868865 - L2 LINE L2 -218 3054 2851 15315 88 40 0 chrX 156105438 156108634 -20865506 + L1PA8 LINE L1 2996 6170 -2 414 0 0 0 chrX 156108638 156108684 -20865456 + (TA)n Simple_repeat Simple_repeat 2 47 0 2588 93 11 13 chrX 156108684 156109047 -20865093 + L1PB1 LINE L1 5774 6143 -8 267 209 21 56 chrX 156109073 156109231 -20864909 + L1MA9 LINE L1 5255 6312 0 * 4489 174 54 11 chrX 156109123 156110046 -20864094 + L1MD1 LINE L1 5280 6242 0 310 87 0 0 chrX 156110156 156110202 -20863938 - MADE1 DNA Mariner -34 46 1 972 136 0 0 chrX 156110382 156110529 -20863611 + L1PA13 LINE L1 5813 5959 -204 904 88 0 7 chrX 156110534 156110671 -20863469 + L1PA13 LINE L1 6026 6161 -2 8057 158 36 3 chrX 156110672 156112299 -20861841 + L1M1 LINE L1 3776 5461 -743 459 249 33 28 chrX 156112411 156112592 -20861548 - L1MEd LINE L1 -4989 1130 949 248 240 96 16 chrX 156112604 156112729 -20861411 - HAL1 LINE L1 -1391 1116 982 * 903 164 0 0 chrX 156112706 156112871 -20861269 - L1 LINE L1 -3746 2400 2236 1606 167 35 3 chrX 156112872 156113183 -20860957 - L1 LINE L1 -3998 2851 2531 418 289 31 0 chrX 156113196 156113390 -20860750 - L1M4 LINE L1 -750 5396 5197 1160 233 8 8 chrX 156113753 156114011 -20860129 + MIR SINE MIR 1 258 -4 249 33 0 0 chrX 156114011 156114041 -20860099 + (ATG)n Simple_repeat Simple_repeat 1 30 0 211 268 0 36 chrX 156114285 156114341 -20859799 - MER5A DNA MER1_type -75 114 61 23628 129 15 16 chrX 156114354 156118212 -20855928 - L1PA10 LINE L1 0 6483 2651 2513 80 0 0 chrX 156118212 156118523 -20855617 + AluY SINE Alu 1 311 0 23628 129 15 16 chrX 156118523 156119562 -20854578 - L1PA10 LINE L1 -3832 2651 1612 3903 109 66 58 chrX 156119562 156120633 -20853507 - MER11A LTR ERVK 0 1071 1 3798 205 6 64 chrX 156120633 156121574 -20852566 - L1PA10 LINE L1 -4835 1626 740 559 107 0 0 chrX 156121574 156121649 -20852491 + AluS SINE Alu 1 75 -238 42705 34 1 1 chrX 156122346 156128489 -20845651 + L1PA3 LINE L1 9 6152 -3 2223 106 0 0 chrX 156128880 156129172 -20844968 - AluSx SINE Alu -20 292 1 1418 248 198 8 chrX 156130035 156130540 -20843600 + L2 LINE L2 2319 2919 -395 514 274 15 0 chrX 156130573 156130708 -20843432 + L2 LINE L2 1816 1952 -1362 651 235 178 54 chrX 156130734 156130958 -20843182 - L2 LINE L2 -46 3267 3072 2451 74 0 3 chrX 156130958 156131254 -20842886 - AluY SINE Alu -16 295 1 651 235 178 54 chrX 156131254 156131487 -20842653 - L2 LINE L2 -241 3072 2044 238 375 48 0 chrX 156131483 156131587 -20842553 + L2 LINE L2 1998 2106 -1208 * 694 320 98 33 chrX 156132403 156132769 -20841371 - L3 LINE CR1 -701 876 487 197 260 147 40 chrX 156132768 156132918 -20841222 - L2 LINE L2 -445 2869 2704 * 25 0 0 0 chrX 156133473 156133498 -20840642 + AT_rich Low_complexity Low_complexity 1 25 0 212 244 0 0 chrX 156133934 156133979 -20840161 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 211 359 51 34 chrX 156134013 156134130 -20840010 - L2 LINE L2 -201 3071 2953 24 91 0 0 chrX 156134529 156134595 -20839545 + AT_rich Low_complexity Low_complexity 1 66 0 1871 141 3 30 chrX 156134885 156135184 -20838956 + AluJo SINE Alu 1 291 -21 230 234 106 21 chrX 156135718 156135812 -20838328 - MIR3 SINE MIR -18 190 89 184 309 73 0 chrX 156136019 156136074 -20838066 + L2 LINE L2 3244 3302 -11 513 298 119 38 chrX 156136650 156136885 -20837255 - MIR SINE MIR -1 261 8 532 277 32 7 chrX 156137250 156137405 -20836735 - MIR3 SINE MIR -3 205 47 2822 182 98 49 chrX 156138378 156139263 -20834877 - MER63C DNA MER1_type 0 930 2 1018 210 8 8 chrX 156139659 156139907 -20834233 - L1 LINE L1 -2452 3694 3447 2256 91 0 7 chrX 156139919 156140204 -20833936 - AluSq SINE Alu -26 287 5 3032 47 16 0 chrX 156140210 156140590 -20833550 - HERVL LTR ERVL -732 4922 4537 816 174 19 38 chrX 156140700 156140745 -20833395 - L1 LINE L1 -743 5403 5359 2089 122 0 3 chrX 156140745 156141033 -20833107 - AluSg SINE Alu -23 287 1 816 174 19 38 chrX 156141033 156141200 -20832940 - L1 LINE L1 -787 5359 5195 2422 116 8 8 chrX 156141216 156141579 -20832561 - L1PB3 LINE L1 -2 6152 5790 204 40 0 0 chrX 156141581 156141606 -20832534 + (TA)n Simple_repeat Simple_repeat 2 26 0 5483 152 23 4 chrX 156141607 156143448 -20830692 + L1MA3 LINE L1 4426 6305 0 1536 225 53 105 chrX 156143437 156144098 -20830042 + L1MEc LINE L1 1429 1900 -4315 * 2262 114 0 0 chrX 156144098 156144395 -20829745 + AluSx SINE Alu 3 299 -13 1536 225 53 105 chrX 156144395 156145178 -20828962 + L1MEc LINE L1 1900 2722 -3493 383 40 101 0 chrX 156145179 156145278 -20828862 + (TA)n Simple_repeat Simple_repeat 2 110 0 2033 206 16 14 chrX 156145278 156145850 -20828290 + L1MEc LINE L1 2736 3308 -2907 538 42 0 0 chrX 156145845 156145917 -20828223 - L1P LINE L1 -1477 4669 4598 * 705 22 0 0 chrX 156145916 156146005 -20828135 + L1P3 LINE L1 5403 5491 -663 1030 132 0 0 chrX 156146005 156146149 -20827991 + AluSg/x SINE Alu 147 290 -22 7103 113 38 2 chrX 156146190 156147389 -20826751 + L1M1 LINE L1 1983 3225 -4340 1234 149 0 20 chrX 156147389 156147590 -20826550 + AluJb SINE Alu 105 301 -11 571 195 40 7 chrX 156147591 156147740 -20826400 + L1MEc LINE L1 3638 3791 -2424 1990 130 54 65 chrX 156147741 156148109 -20826031 - THE1B LTR MaLR 0 364 1 2871 85 0 10 chrX 156148109 156148508 -20825632 - THE1B-int LTR MaLR 0 1580 1186 8538 89 7 0 chrX 156148751 156149934 -20824206 - THE1B-int LTR MaLR -389 1191 1 2243 127 30 30 chrX 156149934 156150296 -20823844 - THE1B LTR MaLR 0 364 3 355 143 0 0 chrX 156150305 156150368 -20823772 + L1MEc LINE L1 3795 3857 -2358 * 3832 171 0 1 chrX 156150354 156151084 -20823056 - L1PA13 LINE L1 -918 5228 4500 3241 121 26 12 chrX 156151098 156151326 -20822814 + L1PA13 LINE L1 5254 5477 -686 637 139 0 119 chrX 156151326 156151477 -20822663 + FLAM_C SINE Alu 1 133 0 3241 121 26 12 chrX 156151477 156151818 -20822322 + L1PA13 LINE L1 5477 5831 -332 972 166 15 0 chrX 156151819 156152018 -20822122 + L1MA2 LINE L1 3 204 -6659 * 12593 201 32 20 chrX 156152014 156154878 -20819262 + L1MA2 LINE L1 634 3734 -3128 3274 76 7 16 chrX 156154878 156155324 -20818816 - MLT2A1 LTR ERVL 0 444 3 12593 201 32 20 chrX 156155324 156157519 -20816621 + L1MA2 LINE L1 3734 5901 -961 26895 94 10 74 chrX 156157530 156162383 -20811757 + L1P LINE L1 12 4552 -1594 5007 105 12 8 chrX 156162487 156163257 -20810883 + L1MA2 LINE L1 6248 7020 0 1112 203 68 0 chrX 156163260 156163556 -20810584 + L1ME LINE L1 5298 5613 -551 862 226 20 5 chrX 156163602 156163806 -20810334 - L2 LINE L2 -2463 851 645 639 228 96 30 chrX 156164423 156164638 -20809502 - MIR SINE MIR 0 262 37 536 196 327 13 chrX 156165465 156165618 -20808522 + MIR SINE MIR 56 256 -6 248 260 13 66 chrX 156166156 156166250 -20807890 + MIR SINE MIR 70 157 -60 207 200 0 0 chrX 156166285 156166325 -20807815 + (CTA)n Simple_repeat Simple_repeat 1 40 0 324 205 77 0 chrX 156166337 156166415 -20807725 + MIR SINE MIR 147 230 -32 400 320 16 0 chrX 156166889 156167011 -20807129 - MIR3 SINE MIR -3 205 82 222 274 95 0 chrX 156168742 156168837 -20805303 - L2 LINE L2 -886 2428 2325 27 29 0 0 chrX 156168967 156169001 -20805139 + AT_rich Low_complexity Low_complexity 1 34 0 828 194 90 18 chrX 156169178 156169400 -20804740 - L1MB8 LINE L1 -23 6155 5918 1867 145 76 20 chrX 156169401 156169745 -20804395 - MSTB LTR MaLR 0 426 64 2199 160 27 11 chrX 156169821 156170190 -20803950 - L1PB4 LINE L1 0 6156 5782 2291 158 49 55 chrX 156170199 156170576 -20803564 - L1PB4 LINE L1 -504 5652 5286 210 91 0 0 chrX 156170576 156170609 -20803531 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2291 158 49 55 chrX 156170609 156170894 -20803246 - L1PB4 LINE L1 -870 5286 5001 246 257 0 49 chrX 156171229 156171373 -20802767 + T-rich Low_complexity Low_complexity 2 138 0 305 337 94 67 chrX 156171475 156171881 -20802259 + L2 LINE L2 2339 2755 -559 285 309 45 124 chrX 156171931 156172245 -20801895 + L2 LINE L2 2934 3222 -50 683 320 107 35 chrX 156173022 156173618 -20800522 + L2 LINE L2 2233 2871 -443 685 267 21 25 chrX 156173744 156173984 -20800156 - L2 LINE L2 0 3313 3075 337 301 118 13 chrX 156174013 156174166 -20799974 + MIR SINE MIR 20 188 -74 225 230 80 35 chrX 156174326 156174439 -20799701 - L1MC4 LINE L1 -1 8041 7924 653 216 39 23 chrX 156174580 156175063 -20799077 - L1ME2 LINE L1 -1 6163 5511 756 187 14 7 chrX 156175064 156175203 -20798937 - MSTB LTR MaLR -223 203 64 231 239 0 26 chrX 156175203 156175278 -20798862 - L1M3 LINE L1 -683 5500 5431 2199 160 27 11 chrX 156175279 156175648 -20798492 - L1PB4 LINE L1 0 6156 5782 6917 206 52 25 chrX 156175657 156176034 -20798106 - L1PB4 LINE L1 -504 5652 5286 210 91 0 0 chrX 156176034 156176067 -20798073 + (TTG)n Simple_repeat Simple_repeat 1 33 0 6917 206 52 25 chrX 156176067 156177169 -20796971 - L1PB4 LINE L1 -870 5286 4214 258 32 0 0 chrX 156177169 156177200 -20796940 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 300 111 0 0 chrX 156177199 156177244 -20796896 + (TG)n Simple_repeat Simple_repeat 2 46 0 6917 206 52 25 chrX 156177200 156178033 -20796107 - L1PB4 LINE L1 -1942 4214 3332 1478 97 4 29 chrX 156178026 156178264 -20795876 - L1MA6 LINE L1 -131 6169 5938 * 23 33 0 0 chrX 156178264 156178294 -20795846 + AT_rich Low_complexity Low_complexity 1 30 0 4743 124 27 31 chrX 156178294 156178471 -20795669 - L1MA2 LINE L1 -5 6299 6123 9323 25 6 0 chrX 156178471 156180276 -20793864 - L1PA4 LINE L1 -3 6152 4342 4743 124 27 31 chrX 156180276 156180705 -20793435 - L1MA2 LINE L1 -181 6123 5694 2605 222 9 40 chrX 156180705 156181277 -20792863 - MLT2B3 LTR ERVL 0 554 1 4743 124 27 31 chrX 156181277 156181484 -20792656 - L1MA2 LINE L1 -610 5694 5488 26 30 0 0 chrX 156181783 156181816 -20792324 + AT_rich Low_complexity Low_complexity 1 33 0 1661 166 21 0 chrX 156181820 156182103 -20792037 - L1MA3 LINE L1 0 6305 6017 1274 141 40 0 chrX 156182107 156182405 -20791735 - L1MA2 LINE L1 -743 5403 5183 5138 131 21 20 chrX 156182409 156183633 -20790507 - L1MA8 LINE L1 -161 6130 4903 472 169 0 0 chrX 156183631 156183708 -20790432 - L1MA3 LINE L1 -767 5536 5460 * 823 204 42 11 chrX 156183720 156183911 -20790229 - L1MA3 LINE L1 -927 5219 5023 250 287 44 73 chrX 156184383 156184519 -20789621 + MIR SINE MIR 81 212 -50 239 300 169 0 chrX 156184660 156184790 -20789350 + MIR SINE MIR 47 198 -64 2320 79 0 58 chrX 156184946 156185276 -20788864 - AluSx SINE Alu -1 311 1 212 269 0 77 chrX 156185284 156185362 -20788778 - MIR SINE MIR -72 190 119 2613 199 49 24 chrX 156185452 156186039 -20788101 + L1ME3A LINE L1 5566 6167 -3 1336 291 27 32 chrX 156186075 156186654 -20787486 + L2 LINE L2 2735 3311 -2 468 340 0 12 chrX 156187366 156187528 -20786612 + MIR3 SINE MIR 42 201 -7 657 219 15 0 chrX 156188481 156188618 -20785522 - Charlie1 DNA MER1_type 0 2761 2623 573 212 8 23 chrX 156188625 156188757 -20785383 - Charlie1 DNA MER1_type -2541 220 91 521 202 0 30 chrX 156188848 156188947 -20785193 - Charlie1 DNA MER1_type -2661 100 5 223 313 0 0 chrX 156190520 156190584 -20783556 + L2 LINE L2 3250 3313 0 317 231 198 0 chrX 156190690 156190781 -20783359 + MER81 DNA DNA 1 109 -5 932 222 22 11 chrX 156190925 156191110 -20783030 + MER5A DNA MER1_type 3 189 0 523 312 13 6 chrX 156191117 156191280 -20782860 + MIR3 SINE MIR 36 201 -7 364 252 65 28 chrX 156191250 156191357 -20782783 + MIR SINE MIR 63 173 -89 * 381 249 373 5 chrX 156191404 156191589 -20782551 - MIR SINE MIR -1 261 9 4418 128 8 0 chrX 156191775 156192423 -20781717 + L1PA13 LINE L1 1 653 -6928 24354 168 11 13 chrX 156192436 156198252 -20775888 + L1PA13 LINE L1 988 7601 0 1921 133 0 35 chrX 156198313 156198628 -20775512 + AluJo SINE Alu 1 304 -8 205 29 29 29 chrX 156199125 156199160 -20774980 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 467 285 87 44 chrX 156199786 156200038 -20774102 + MIR SINE MIR 3 262 0 1908 259 64 72 chrX 156200465 156201204 -20772936 + HAL1 LINE L1 33 765 -1742 255 311 28 51 chrX 156201234 156201488 -20772652 - L2 LINE L2 -1594 1720 1473 485 256 44 15 chrX 156201559 156201696 -20772444 - L2 LINE L2 0 3272 3132 340 338 0 78 chrX 156202191 156202410 -20771730 + MIR SINE MIR 17 218 -44 266 0 0 29 chrX 156202489 156202524 -20771616 + (CCCTAA)n Simple_repeat Simple_repeat 5 38 0 413 332 102 20 chrX 156202743 156202939 -20771201 - L2 LINE L2 -1 3271 3060 303 222 177 12 chrX 156202961 156203094 -20771046 - MIR3 SINE MIR -51 157 3 28 0 0 0 chrX 156203257 156203285 -20770855 + AT_rich Low_complexity Low_complexity 1 28 0 230 380 0 0 chrX 156203342 156203421 -20770719 + (TG)n Simple_repeat Simple_repeat 1 79 0 383 203 0 13 chrX 156203751 156203830 -20770310 + L1MEd LINE L1 4 81 -6038 199 186 23 23 chrX 156203917 156203960 -20770180 + MIR3 SINE MIR 138 180 -28 298 267 60 60 chrX 156203997 156204113 -20770027 - L2 LINE L2 0 3272 3157 306 271 28 47 chrX 156204122 156204229 -20769911 - MER5B DNA MER1_type 0 178 74 583 283 57 44 chrX 156204451 156204748 -20769392 - L2 LINE L2 -753 2561 2261 1566 257 101 60 chrX 156205354 156206471 -20767669 + L1MEd LINE L1 4 1236 -4883 373 313 53 80 chrX 156206477 156206742 -20767398 + L1MEd LINE L1 1299 1549 -4761 1506 153 0 133 chrX 156206742 156206963 -20767177 - AluSx SINE Alu -12 300 140 180 0 0 0 chrX 156206963 156206983 -20767157 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1506 153 0 133 chrX 156206983 156207107 -20767033 - AluSx SINE Alu -172 140 1 373 313 53 80 chrX 156207107 156207291 -20766849 + L1MEd LINE L1 1549 1736 -4574 268 259 36 27 chrX 156207573 156207685 -20766455 - MER87 LTR ERV1 0 541 429 24 32 0 0 chrX 156208111 156208142 -20765998 + AT_rich Low_complexity Low_complexity 1 31 0 211 200 12 24 chrX 156208148 156208233 -20765907 + GA-rich Low_complexity Low_complexity 5 88 0 530 217 23 0 chrX 156208251 156208518 -20765622 + (TA)n Simple_repeat Simple_repeat 1 273 0 302 294 11 11 chrX 156208518 156208610 -20765530 - L1MC4 LINE L1 -1339 6703 6612 464 234 6 0 chrX 156208611 156208778 -20765362 + (TA)n Simple_repeat Simple_repeat 2 169 0 684 200 0 0 chrX 156208912 156209148 -20764992 + (TA)n Simple_repeat Simple_repeat 1 236 0 309 322 0 0 chrX 156209170 156209260 -20764880 + L1MC4 LINE L1 6614 6703 -1339 * 336 239 22 22 chrX 156209214 156209306 -20764834 - L1MC4 LINE L1 -1339 6703 6612 378 110 30 30 chrX 156209316 156209416 -20764724 + (TA)n Simple_repeat Simple_repeat 1 100 0 495 207 17 23 chrX 156209946 156210120 -20764020 + GA-rich Low_complexity Low_complexity 4 176 0 22 0 0 0 chrX 156210284 156210306 -20763834 + AT_rich Low_complexity Low_complexity 1 22 0 569 312 17 21 chrX 156210453 156210687 -20763453 + HAL1b LINE L1 129 361 -987 242 323 55 11 chrX 156210827 156210990 -20763150 + L1MDa LINE L1 21 622 -5908 2233 174 41 31 chrX 156211752 156212262 -20761878 + L1MDa LINE L1 1470 1984 -4556 607 300 76 63 chrX 156212427 156212967 -20761173 + L2 LINE L2 1843 2389 -925 339 280 84 92 chrX 156213028 156213213 -20760927 + L2 LINE L2 2906 3088 -184 2904 118 14 21 chrX 156213213 156213645 -20760495 - MSTB1 LTR MaLR -2 430 2 339 280 84 92 chrX 156213645 156213827 -20760313 + L2 LINE L2 3088 3270 -2 447 332 33 63 chrX 156213905 156214300 -20759840 + L2 LINE L2 2522 2904 -410 466 227 0 0 chrX 156214420 156214508 -20759632 + L1MB5 LINE L1 3782 3869 -2277 5477 211 29 44 chrX 156214509 156214962 -20759178 + L1MB5 LINE L1 3823 4281 -1893 2086 132 124 46 chrX 156214962 156215357 -20758783 + MSTA LTR MaLR 1 426 -2 5477 211 29 44 chrX 156215357 156216492 -20757648 + L1MB5 LINE L1 4281 5368 -806 730 223 181 71 chrX 156216492 156216829 -20757311 - MLT1A2 LTR MaLR 0 374 1 5477 211 29 44 chrX 156216829 156217459 -20756681 + L1MB5 LINE L1 5368 6006 -168 398 206 7 66 chrX 156217488 156217624 -20756516 + L1MB5 LINE L1 5970 6097 -77 22 0 0 0 chrX 156218945 156218967 -20755173 + GC_rich Low_complexity Low_complexity 1 22 0 1144 241 165 55 chrX 156219744 156220488 -20753652 - L1M3e LINE L1 -6029 1001 176 575 293 97 26 chrX 156220488 156220889 -20753251 - L2 LINE L2 -183 3130 2709 1111 249 109 18 chrX 156220891 156221276 -20752864 - L2 LINE L2 -460 2854 2435 2910 161 55 2 chrX 156221338 156221798 -20752342 - L1MA9 LINE L1 -38 6274 5775 222 37 0 0 chrX 156221798 156221825 -20752315 + (TA)n Simple_repeat Simple_repeat 2 28 0 2910 161 55 2 chrX 156221825 156221946 -20752194 - L1MA9 LINE L1 -537 5775 5662 229 244 33 0 chrX 156221945 156222035 -20752105 - L1M4 LINE L1 -2215 3931 3839 * 2230 106 3 19 chrX 156222099 156222411 -20751729 - AluSx SINE Alu -5 307 1 28 48 0 0 chrX 156223583 156223625 -20750515 + AT_rich Low_complexity Low_complexity 1 42 0 53 81 0 0 chrX 156223772 156223895 -20750245 + AT_rich Low_complexity Low_complexity 1 123 0 413 294 78 20 chrX 156224480 156224633 -20749507 - MIR3 SINE MIR -23 185 24 592 294 50 27 chrX 156224850 156225071 -20749069 - MIR SINE MIR -29 233 8 522 241 25 20 chrX 156225591 156225790 -20748350 - HAL1b LINE L1 -261 1087 888 298 293 40 45 chrX 156226138 156226336 -20747804 - HAL1b LINE L1 -1052 296 100 229 300 0 25 chrX 156226415 156226535 -20747605 + T-rich Low_complexity Low_complexity 2 118 0 929 274 23 19 chrX 156226543 156226809 -20747331 + L2 LINE L2 2356 2622 -692 1268 176 79 32 chrX 156226814 156227191 -20746949 - MLT1C LTR MaLR -2 465 1 251 296 34 0 chrX 156227191 156227278 -20746862 - MLT1C LTR MaLR -377 90 1 913 297 69 22 chrX 156227282 156227487 -20746653 + L2 LINE L2 2627 2854 -460 2028 148 20 0 chrX 156227487 156227785 -20746355 - AluSx SINE Alu -8 304 1 913 297 69 22 chrX 156227785 156227899 -20746241 + L2 LINE L2 2854 2961 -353 590 265 110 33 chrX 156227900 156228145 -20745995 + L2 LINE L2 2681 2944 -370 233 191 0 43 chrX 156228309 156228356 -20745784 + L2 LINE L2 3226 3270 -2 519 313 95 14 chrX 156228653 156228935 -20745205 - L1ME LINE L1 -376 5745 5438 234 178 141 76 chrX 156229006 156229191 -20744949 - L1ME LINE L1 -817 5329 5133 1426 249 58 40 chrX 156229342 156229874 -20744266 + L1ME3A LINE L1 5345 5884 -286 1870 229 119 22 chrX 156229875 156230429 -20743711 - MLT1E2 LTR MaLR -18 608 1 1006 195 47 32 chrX 156230429 156230706 -20743434 + L1ME3A LINE L1 5882 6162 -8 246 239 0 30 chrX 156230848 156230915 -20743225 - L1MC4a LINE L1 -1219 6589 6525 1721 194 3 0 chrX 156230918 156231227 -20742913 - AluSx SINE Alu -2 310 1 2361 104 3 0 chrX 156231589 156231898 -20742242 - AluSx SINE Alu -2 310 1 673 306 16 12 chrX 156232269 156232517 -20741623 - HAL1b LINE L1 -750 598 350 398 68 0 17 chrX 156232580 156232639 -20741501 + (TG)n Simple_repeat Simple_repeat 2 59 0 255 261 183 0 chrX 156232819 156232934 -20741206 - MIR SINE MIR -6 256 121 299 291 165 32 chrX 156233271 156233429 -20740711 + MIR SINE MIR 28 206 -56 833 207 116 15 chrX 156233444 156233642 -20740498 - MER58A DNA MER1_type -1 223 6 1274 44 12 0 chrX 156233914 156234074 -20740066 + L1PA10 LINE L1 6003 6164 -4 188 229 49 33 chrX 156234318 156234379 -20739761 - L2 LINE L2 -5 3267 3206 191 323 0 21 chrX 156234697 156234793 -20739347 + L2 LINE L2 2420 2513 -801 368 252 99 45 chrX 156235718 156235829 -20738311 + L2 LINE L2 3187 3303 -10 22 56 0 0 chrX 156235848 156235884 -20738256 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chrX 156236444 156236487 -20737653 + AT_rich Low_complexity Low_complexity 1 43 0 2275 133 11 3 chrX 156237324 156237686 -20736454 - MLT1A1 LTR MaLR 0 365 1 224 254 55 0 chrX 156238136 156238191 -20735949 - L2 LINE L2 -6 3307 3250 2218 166 134 4 chrX 156240953 156241477 -20732663 - L1 LINE L1 -1005 5141 4550 216 86 0 0 chrX 156241606 156241641 -20732499 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1313 221 158 22 chrX 156241845 156242256 -20731884 + MLT1C LTR MaLR 1 467 0 498 295 347 22 chrX 156242497 156243142 -20730998 - L2 LINE L2 -1814 1500 646 2173 113 0 0 chrX 156243950 156244242 -20729898 + AluSx SINE Alu 1 292 -20 42457 34 1 4 chrX 156244633 156250791 -20723349 - L1PA3 LINE L1 -3 6152 8 445 299 157 8 chrX 156250807 156251068 -20723072 - L1 LINE L1 -1946 4200 3901 839 114 117 19 chrX 156251436 156251743 -20722397 - LTR24 LTR ERV1 -47 420 1 413 103 19 103 chrX 156251743 156251842 -20722298 + MER2 DNA MER2_type 106 195 -150 272 63 0 143 chrX 156251858 156251921 -20722219 - L1PA16 LINE L1 -6 6160 6107 238 351 0 99 chrX 156253629 156253780 -20720360 - L3 LINE CR1 -4 1573 1438 1432 217 57 40 chrX 156253803 156254208 -20719932 + MER92A LTR ERV1 1 412 0 25 31 0 0 chrX 156255013 156255045 -20719095 + AT_rich Low_complexity Low_complexity 1 32 0 398 269 28 14 chrX 156255239 156255384 -20718756 + L1MD3 LINE L1 7830 7976 -19 660 340 44 42 chrX 156256056 156256606 -20717534 + L1M4 LINE L1 4475 5025 -1121 4366 183 4 23 chrX 156256622 156257644 -20716496 - MER52A LTR ERV1 -2 1753 822 7069 205 19 14 chrX 156257744 156259516 -20714624 + L1PB2 LINE L1 3550 5331 -815 5822 131 2 31 chrX 156259514 156260939 -20713201 + L1PB1 LINE L1 4767 6150 -1 * 4311 164 13 7 chrX 156260949 156261797 -20712343 + L1PB2 LINE L1 5297 6149 -2 22 0 0 0 chrX 156261797 156261819 -20712321 + AT_rich Low_complexity Low_complexity 1 22 0 316 308 13 88 chrX 156261918 156262077 -20712063 - MIR SINE MIR -112 150 4 490 255 240 5 chrX 156262134 156262342 -20711798 - MIR SINE MIR -3 259 3 328 274 91 29 chrX 156265317 156265492 -20708648 - MIR SINE MIR -6 256 71 397 293 78 0 chrX 156266335 156266451 -20707689 + MIR SINE MIR 31 155 -107 416 271 47 42 chrX 156266833 156267047 -20707093 + L1MC4a LINE L1 6547 6761 -1047 26 0 0 0 chrX 156267245 156267271 -20706869 + AT_rich Low_complexity Low_complexity 1 26 0 3902 177 4 19 chrX 156267739 156268844 -20705296 + L1PB4 LINE L1 4528 5623 -533 2702 182 13 22 chrX 156268913 156269447 -20704693 + L1PB4 LINE L1 5624 6152 -4 249 213 213 0 chrX 156269471 156269565 -20704575 + L1MB4 LINE L1 816 929 -5717 3548 209 79 29 chrX 156269673 156270819 -20703321 + L1MB4 LINE L1 816 2006 -4640 4386 189 27 6 chrX 156270828 156271708 -20702432 + L1MB4 LINE L1 5779 6677 -1 609 60 20 10 chrX 156271713 156271813 -20702327 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 957 207 0 0 chrX 156272920 156273084 -20701056 + FAM SINE Alu 1 164 -11 21 71 0 0 chrX 156274252 156274294 -20699846 + AT_rich Low_complexity Low_complexity 1 42 0 621 270 25 15 chrX 156274299 156274503 -20699637 - L1ME1 LINE L1 -9 6157 5952 225 229 71 0 chrX 156274540 156274610 -20699530 - MER53 DNA DNA -92 97 23 * 307 192 68 0 chrX 156274548 156274621 -20699519 + MER53 DNA DNA 111 188 -1 1486 257 61 25 chrX 156274627 156275234 -20698906 - L1ME LINE L1 -1028 6078 5450 1640 242 105 8 chrX 156275281 156275892 -20698248 + L1 LINE L1 3302 3971 -2175 386 163 12 58 chrX 156275890 156275976 -20698164 + L1MB4 LINE L1 6059 6140 -40 * 893 236 93 56 chrX 156276036 156276497 -20697643 + L1MC5 LINE L1 6928 7405 -556 22 0 0 0 chrX 156276563 156276585 -20697555 + AT_rich Low_complexity Low_complexity 1 22 0 11966 130 6 1 chrX 156276869 156278626 -20695514 - HERVL-A2 LTR ERVL -3760 1894 129 29 70 0 0 chrX 156278649 156278706 -20695434 + AT_rich Low_complexity Low_complexity 1 57 0 911 111 0 0 chrX 156278710 156278845 -20695295 - HERVL-A2 LTR ERVL -5519 135 1 1889 157 78 29 chrX 156278845 156279377 -20694763 - MLT2A2 LTR ERVL 0 554 1 5596 228 47 18 chrX 156279378 156280984 -20693156 - L1ME LINE L1 -2177 4929 3277 505 247 11 27 chrX 156281069 156281255 -20692885 - L1M4 LINE L1 -3821 3285 3103 388 263 7 20 chrX 156281258 156281410 -20692730 - L1M4 LINE L1 -4069 3037 2888 7283 247 69 46 chrX 156281439 156281986 -20692154 - L1M4 LINE L1 -4705 2401 1868 1971 167 15 0 chrX 156281986 156282321 -20691819 + MER2 DNA MER2_type 5 344 0 7283 247 69 46 chrX 156282321 156284429 -20689711 - L1M4 LINE L1 -5238 1868 1 338 339 83 5 chrX 156284436 156284628 -20689512 + L2 LINE L2 2161 2367 -947 226 292 115 0 chrX 156284820 156284933 -20689207 - L1ME LINE L1 -5197 1899 1774 1287 120 32 9 chrX 156284933 156285150 -20688990 - AluSg/x SINE Alu -3 309 88 1140 77 7 0 chrX 156285251 156285406 -20688734 - L1PB1 LINE L1 -213 5938 5783 378 0 0 0 chrX 156285412 156285454 -20688686 + (TA)n Simple_repeat Simple_repeat 2 43 0 6385 74 10 39 chrX 156285458 156286992 -20687148 - L1PA8 LINE L1 -2 6170 4631 513 0 0 0 chrX 156286997 156287056 -20687084 - L1PA4 LINE L1 -8 6147 6089 10813 48 8 3 chrX 156287056 156288440 -20685700 - L1PA8 LINE L1 -1515 4631 3241 898 192 70 0 chrX 156288712 156288926 -20685214 - L1MC3 LINE L1 0 7785 7557 230 307 59 0 chrX 156289222 156289323 -20684817 - L1ME LINE L1 -5644 1452 1346 251 326 88 34 chrX 156289825 156289972 -20684168 + L2 LINE L2 3158 3312 -1 313 260 67 39 chrX 156291184 156291464 -20682676 + L1MC4 LINE L1 6957 7241 -737 294 275 80 58 chrX 156291501 156291894 -20682246 + L1MC5 LINE L1 7261 7576 -385 353 329 86 7 chrX 156291960 156292112 -20682028 + LTR33 LTR ERVL 2 165 -356 368 284 18 0 chrX 156292167 156292276 -20681864 - MER81 DNA DNA 0 114 4 1555 143 3 80 chrX 156292300 156292656 -20681484 - MER4A LTR ERV1 -17 647 261 588 89 11 11 chrX 156292662 156292752 -20681388 - MER4A LTR ERV1 -572 92 3 12588 110 49 19 chrX 156292760 156294853 -20679287 - MER4A-int LTR ERV1 0 6598 4442 2670 103 5 8 chrX 156294853 156295230 -20678910 + LTR8 LTR ERV1 1 376 -315 3980 102 6 0 chrX 156295341 156295883 -20678257 + HERVL LTR ERVL 2498 3042 -2612 * 13453 113 18 5 chrX 156295881 156297836 -20676304 + HERVL LTR ERVL 3244 5224 -430 334 270 74 53 chrX 156298049 156298265 -20675875 + LTR16B LTR ERVL 225 462 -2 958 208 71 111 chrX 156298506 156298886 -20675254 - MLT1A1 LTR MaLR 0 365 1 68 0 0 0 chrX 156298903 156298971 -20675169 + AT_rich Low_complexity Low_complexity 1 68 0 218 213 0 0 chrX 156298991 156299038 -20675102 + (TA)n Simple_repeat Simple_repeat 1 47 0 1289 249 125 21 chrX 156299050 156299531 -20674609 - L1ME3A LINE L1 -24 6146 5616 2125 177 8 54 chrX 156299601 156300055 -20674085 - Tigger2a DNA MER2_type 0 434 4 306 0 0 0 chrX 156300057 156300091 -20674049 + (TG)n Simple_repeat Simple_repeat 2 35 0 3244 99 23 0 chrX 156300129 156300572 -20673568 - MLT2A2 LTR ERVL 0 453 1 987 138 0 13 chrX 156300648 156300807 -20673333 + Tigger1 DNA MER2_type 1 157 -2261 * 1052 128 8 116 chrX 156300796 156301038 -20673102 + Tigger1 DNA MER2_type 2202 2417 -1 391 309 102 18 chrX 156301038 156301672 -20672468 - L1M4 LINE L1 -1808 4338 3596 32 26 0 0 chrX 156301839 156301878 -20672262 + AT_rich Low_complexity Low_complexity 1 39 0 311 268 90 99 chrX 156302680 156303261 -20670879 - HAL1b LINE L1 -577 771 195 1373 228 31 17 chrX 156303261 156303621 -20670519 - MLT1A1 LTR MaLR 0 365 1 311 268 90 99 chrX 156303621 156303738 -20670402 - HAL1b LINE L1 -1153 195 79 247 189 14 27 chrX 156304439 156304513 -20669627 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 35 0 0 chrX 156304932 156304961 -20669179 + AT_rich Low_complexity Low_complexity 1 29 0 2256 109 23 9 chrX 156305431 156305781 -20668359 - THE1A LTR MaLR 0 355 1 29 0 0 0 chrX 156306883 156306912 -20667228 + AT_rich Low_complexity Low_complexity 1 29 0 198 384 0 41 chrX 156306986 156307059 -20667081 - L2 LINE L2 -62 3210 3141 592 249 168 13 chrX 156308099 156308408 -20665732 - Zaphod DNA AcHobo -76 3955 3599 2164 234 108 23 chrX 156308408 156309284 -20664856 - Zaphod DNA AcHobo -3040 991 14 3149 190 58 25 chrX 156310117 156310801 -20663339 + L1MD1 LINE L1 5530 6236 -6 1984 103 11 0 chrX 156310816 156311089 -20663051 + AluSx SINE Alu 1 276 -36 186 43 0 0 chrX 156311099 156311122 -20663018 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 246 305 65 24 chrX 156311169 156311415 -20662725 + HAL1 LINE L1 1087 1342 -1165 201 39 0 0 chrX 156311664 156311690 -20662450 + (T)n Simple_repeat Simple_repeat 1 26 0 1627 199 32 23 chrX 156311692 156312034 -20662106 - MSTD LTR MaLR -51 345 1 357 175 25 12 chrX 156312034 156312114 -20662026 - MSTD-int LTR MaLR 0 1735 1655 9786 25 0 0 chrX 156312233 156314162 -20659978 - L1PA3 LINE L1 0 6155 4226 1466 305 26 24 chrX 156314262 156314874 -20659266 - L1M3d LINE L1 -5379 512 2 282 220 50 10 chrX 156314891 156314991 -20659149 + L1M4 LINE L1 2872 2975 -3171 1089 210 44 54 chrX 156315048 156315343 -20658797 - AluJo SINE Alu -10 302 11 1829 261 93 56 chrX 156315369 156316610 -20657530 + L1M4 LINE L1 3074 4360 -1786 4231 139 178 104 chrX 156316738 156318524 -20655616 - MER4B-int LTR ERV1 -2917 3681 1764 1159 140 56 10 chrX 156318498 156318737 -20655403 - MER4B-int LTR ERV1 -5574 1184 786 * 293 220 121 0 chrX 156319220 156319311 -20654829 + L1MC4 LINE L1 5780 5881 -1927 301 254 40 103 chrX 156319581 156319707 -20654433 + L1MC4 LINE L1 6472 6589 -1453 270 173 181 55 chrX 156319712 156319839 -20654301 + L1MC4 LINE L1 6963 7105 -937 215 56 56 0 chrX 156319839 156319875 -20654265 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 203 171 0 24 chrX 156319882 156319923 -20654217 + GA-rich Low_complexity Low_complexity 4 43 0 2133 252 69 11 chrX 156319925 156320650 -20653490 + L1MC4 LINE L1 7086 7852 -190 910 245 124 44 chrX 156320650 156320688 -20653452 - MLT1C LTR MaLR 0 467 433 2638 193 35 15 chrX 156320688 156321226 -20652914 - MER44D DNA MER2_type -1 604 1 910 245 124 44 chrX 156321226 156321615 -20652525 - MLT1C LTR MaLR -34 433 6 269 257 96 22 chrX 156321634 156321676 -20652464 + L1MC4 LINE L1 7871 7908 -134 246 62 0 0 chrX 156321676 156321708 -20652432 + (CA)n Simple_repeat Simple_repeat 1 32 0 269 257 96 22 chrX 156321708 156321801 -20652339 + L1MC4 LINE L1 7908 8016 -26 22 0 0 0 chrX 156321814 156321836 -20652304 + AT_rich Low_complexity Low_complexity 1 22 0 304 325 67 34 chrX 156321947 156322245 -20651895 + L1ME2 LINE L1 1036 1343 -4862 2179 121 0 0 chrX 156322343 156322648 -20651492 + AluSx SINE Alu 1 305 -7 2126 260 42 10 chrX 156322687 156323774 -20650366 + L1ME2 LINE L1 4929 6053 -180 771 215 31 20 chrX 156324922 156325117 -20649023 + L1ME2 LINE L1 5945 6141 -23 1816 153 0 21 chrX 156325137 156325450 -20648690 - AluJo SINE Alu 0 307 1 350 363 18 12 chrX 156325573 156325744 -20648396 + L1MEd LINE L1 1908 2079 -4317 755 239 239 0 chrX 156325761 156326054 -20648086 - L1M4 LINE L1 -1717 4429 4067 22 0 0 0 chrX 156326218 156326240 -20647900 + AT_rich Low_complexity Low_complexity 1 22 0 326 286 17 42 chrX 156326306 156326425 -20647715 - L1MC5 LINE L1 -556 7405 7290 5956 139 70 34 chrX 156326462 156326938 -20647202 - Tigger3b DNA MER2_type -1797 1231 774 1647 191 3 0 chrX 156326938 156327226 -20646914 - AluJb SINE Alu -23 289 1 5956 139 70 34 chrX 156327226 156327636 -20646504 - Tigger3b DNA MER2_type -2254 774 289 1784 148 7 34 chrX 156327636 156327934 -20646206 + AluSx SINE Alu 1 290 -22 5956 139 70 34 chrX 156327934 156328234 -20645906 - Tigger3b DNA MER2_type -2739 289 1 2502 108 16 0 chrX 156328411 156328780 -20645360 - L1PB1 LINE L1 0 6151 5777 509 225 101 0 chrX 156330536 156330674 -20643466 + MIR SINE MIR 92 243 -19 700 211 0 0 chrX 156331553 156331681 -20642459 + FLAM_A SINE Alu 1 128 -5 225 299 25 10 chrX 156331715 156331813 -20642327 + MIR SINE MIR 17 116 -103 258 305 53 32 chrX 156331821 156331916 -20642224 - L2 LINE L2 -8 3264 3168 270 0 0 0 chrX 156332414 156332444 -20641696 + (A)n Simple_repeat Simple_repeat 1 30 0 471 148 10 59 chrX 156332772 156332873 -20641267 + MIR SINE MIR 123 218 -44 185 176 22 22 chrX 156334144 156334235 -20639905 + (TA)n Simple_repeat Simple_repeat 2 92 0 359 226 78 70 chrX 156334368 156334483 -20639657 - L2 LINE L2 -6 3266 3151 290 326 30 15 chrX 156334648 156334780 -20639360 + L3 LINE CR1 1348 1481 -96 28 0 0 0 chrX 156334822 156334850 -20639290 + AT_rich Low_complexity Low_complexity 1 28 0 25449 141 9 14 chrX 156335140 156338727 -20635413 + L1PA8A LINE L1 1 3602 -2844 2181 98 10 3 chrX 156338727 156339024 -20635116 + AluY SINE Alu 1 299 -12 25449 141 9 14 chrX 156339024 156341834 -20632306 + L1PA8A LINE L1 3602 6425 -21 23 33 0 0 chrX 156341834 156341864 -20632276 + AT_rich Low_complexity Low_complexity 1 30 0 186 103 0 0 chrX 156341864 156341893 -20632247 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 289 351 133 22 chrX 156342399 156342978 -20631162 + L2 LINE L2 2115 2757 -557 2173 131 0 6 chrX 156344693 156345006 -20629134 - AluSx SINE Alu -1 311 1 23 68 0 0 chrX 156345632 156345676 -20628464 + AT_rich Low_complexity Low_complexity 1 44 0 305 307 72 48 chrX 156346290 156346456 -20627684 + MIR3 SINE MIR 38 207 -1 2221 113 73 87 chrX 156347558 156348049 -20626091 - MER4A-int LTR ERV1 -6044 554 3 1565 122 22 90 chrX 156348054 156348423 -20625717 - MER4A LTR ERV1 0 664 261 626 133 0 10 chrX 156348424 156348522 -20625618 - MER4A LTR ERV1 -567 97 1 243 380 45 0 chrX 156348549 156348728 -20625412 + LTR33 LTR ERVL 327 513 -8 383 291 72 20 chrX 156348760 156349011 -20625129 + L1MC5 LINE L1 7668 7931 -30 249 284 15 0 chrX 156349269 156349336 -20624804 - MLT1K LTR MaLR -342 246 179 679 281 69 50 chrX 156349417 156349994 -20624146 - L1ME4a LINE L1 -10 6111 5524 2789 277 64 32 chrX 156350430 156350993 -20623147 + L1MEc LINE L1 685 1228 -4987 5405 128 16 5 chrX 156350993 156351868 -20622272 + L1MA1 LINE L1 5418 6302 0 2789 277 64 32 chrX 156351868 156353403 -20620737 + L1MEc LINE L1 1228 2807 -3408 417 39 0 0 chrX 156353403 156353454 -20620686 + (TTTTA)n Simple_repeat Simple_repeat 2 52 0 3915 224 42 8 chrX 156353454 156355366 -20618774 - L1MB1 LINE L1 -4 7583 5609 2076 183 38 21 chrX 156355374 156355795 -20618345 + MSTA LTR MaLR 1 428 0 7411 193 16 74 chrX 156355795 156357527 -20616613 + MSTA-int LTR MaLR 1 1632 -19 1948 204 60 0 chrX 156357551 156357953 -20616187 + MSTA LTR MaLR 3 428 0 5719 265 76 34 chrX 156357953 156361006 -20613134 - L1MB1 LINE L1 -1960 5605 2404 985 239 22 4 chrX 156361019 156361249 -20612891 - L1MB1 LINE L1 -4970 2516 2283 5119 140 30 33 chrX 156361504 156362041 -20612099 - L1PA15 LINE L1 -28 6137 5600 324 0 0 0 chrX 156362041 156362077 -20612063 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 1776 172 0 0 chrX 156362081 156362360 -20611780 - AluJb SINE Alu -32 280 2 5119 140 30 33 chrX 156362360 156363083 -20611057 - L1PA15 LINE L1 -568 5597 4878 5096 197 24 6 chrX 156363861 156364942 -20609198 + L1MA3 LINE L1 3138 4238 -1908 * 6024 150 12 19 chrX 156364935 156366330 -20607810 + L1MA3 LINE L1 4918 6303 -2 24 53 0 0 chrX 156366864 156366902 -20607238 + AT_rich Low_complexity Low_complexity 1 38 0 6227 96 31 3 chrX 156367315 156368401 -20605739 - L1PA14 LINE L1 -4 6157 5059 251 259 28 93 chrX 156368803 156368911 -20605229 - L2 LINE L2 -36 3236 3136 2183 124 45 25 chrX 156369271 156369626 -20604514 - THE1B LTR MaLR -2 362 1 849 290 69 47 chrX 156369776 156370228 -20603912 + L2 LINE L2 1710 2171 -1143 981 157 14 28 chrX 156370244 156370461 -20603679 - L1MA8 LINE L1 -3 6288 6075 581 145 54 14 chrX 156370464 156370606 -20603534 + L1PA13 LINE L1 5686 5833 -330 1220 224 10 22 chrX 156370631 156370944 -20603196 - L1MA8 LINE L1 -201 6090 5782 378 349 7 20 chrX 156371083 156371232 -20602908 + MIR3 SINE MIR 52 198 -10 22 35 0 0 chrX 156371728 156371757 -20602383 + AT_rich Low_complexity Low_complexity 1 29 0 1733 157 20 74 chrX 156372553 156372906 -20601234 + THE1C LTR MaLR 1 332 -43 2304 80 0 42 chrX 156372906 156373219 -20600921 - AluSc SINE Alu -9 300 1 1733 157 20 74 chrX 156373219 156373259 -20600881 + THE1C LTR MaLR 332 373 -2 8658 198 48 7 chrX 156373261 156374778 -20599362 + THE1C-int LTR MaLR 1 1580 0 1811 150 31 60 chrX 156374778 156375164 -20598976 + THE1C LTR MaLR 1 375 0 3587 179 52 15 chrX 156375205 156375735 -20598405 - L1PA14 LINE L1 0 6161 5652 1396 201 61 28 chrX 156375735 156376098 -20598042 - THE1C LTR MaLR 0 375 1 8819 144 46 17 chrX 156376098 156377631 -20596509 - THE1C-int LTR MaLR 0 1580 3 1733 180 58 19 chrX 156377633 156377994 -20596146 - THE1C LTR MaLR 0 375 1 3587 179 52 15 chrX 156377994 156378190 -20595950 - L1PA14 LINE L1 -509 5652 5404 2184 113 0 13 chrX 156378199 156378510 -20595630 - AluSc SINE Alu -2 307 1 3535 93 12 0 chrX 156378523 156379026 -20595114 - L1PA13 LINE L1 -6 6157 5649 16092 213 28 10 chrX 156379044 156380718 -20593422 - L1PA14 LINE L1 -755 5391 3749 1992 114 0 7 chrX 156380718 156380999 -20593141 - AluSx SINE Alu 0 312 34 16092 213 28 10 chrX 156380999 156383056 -20591084 - L1PA14 LINE L1 -2397 3749 1591 766 222 34 11 chrX 156383678 156383854 -20590286 - MER58A DNA MER1_type 0 224 45 226 205 0 108 chrX 156384354 156384437 -20589703 + MIR SINE MIR 133 206 -56 235 179 38 142 chrX 156386290 156386396 -20587744 - L2 LINE L2 0 3272 3178 26 0 0 0 chrX 156387544 156387570 -20586570 + AT_rich Low_complexity Low_complexity 1 26 0 691 195 0 92 chrX 156388749 156388880 -20585260 + MER20 DNA MER1_type 62 175 -44 2243 120 0 0 chrX 156388880 156389180 -20584960 + AluSx SINE Alu 1 300 -12 691 195 0 92 chrX 156389180 156389222 -20584918 + MER20 DNA MER1_type 175 219 0 390 332 199 5 chrX 156389318 156389529 -20584611 + MIR SINE MIR 1 252 -10 371 267 76 0 chrX 156392479 156392584 -20581556 - MER63C DNA MER1_type 0 930 818 4476 240 87 34 chrX 156392637 156395328 -20578812 + L1MB4 LINE L1 58 2911 -3733 230 234 0 16 chrX 156395430 156395494 -20578646 + L1MB4 LINE L1 4794 4856 -1788 730 271 26 0 chrX 156395550 156395779 -20578361 + L1MB4 LINE L1 5131 5365 -1279 712 228 4 4 chrX 156395779 156395956 -20578184 + MER4E LTR ERV1 1 284 -615 * 1667 216 14 11 chrX 156395953 156396309 -20577831 + MER4D LTR ERV1 547 903 0 1992 210 43 66 chrX 156396309 156397287 -20576853 + L1MB4 LINE L1 5362 6332 -346 2318 177 2 15 chrX 156397295 156397696 -20576444 - MER61B LTR ERV1 -29 396 1 27594 111 22 14 chrX 156397696 156401918 -20572222 - MER61B-int LTR ERV1 0 5217 958 3439 179 68 59 chrX 156401918 156402750 -20571390 - MER61B-int LTR ERV1 -4377 840 1 2500 155 18 13 chrX 156402761 156403155 -20570985 - MER61B LTR ERV1 -29 396 1 1141 209 40 37 chrX 156403160 156403485 -20570655 + L1MB4 LINE L1 6335 6660 -18 1432 365 25 48 chrX 156403611 156404361 -20569779 + L1ME LINE L1 83 815 -5310 387 250 9 0 chrX 156404350 156404458 -20569682 + L1ME LINE L1 2965 3073 -3571 * 2317 262 39 7 chrX 156404448 156405264 -20568876 + L1ME LINE L1 5041 5882 -762 871 192 70 0 chrX 156405251 156405465 -20568675 + L1MC3 LINE L1 7557 7785 0 * 2096 226 104 26 chrX 156405607 156406289 -20567851 - MER63C DNA MER1_type -144 786 52 434 92 35 11 chrX 156406340 156406427 -20567713 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 508 175 10 48 chrX 156407133 156407236 -20566904 + MER5A DNA MER1_type 11 109 -80 865 110 0 0 chrX 156407239 156407366 -20566774 - L1PA13 LINE L1 -3 6160 6034 920 121 6 42 chrX 156407366 156407531 -20566609 + L1PA13 LINE L1 5860 6018 -145 573 241 206 23 chrX 156408028 156408296 -20565844 - L1ME3A LINE L1 -189 5932 5636 299 350 8 0 chrX 156408294 156408417 -20565723 + L1ME LINE L1 5993 6116 -544 * 1682 118 4 20 chrX 156408418 156408672 -20565468 + AluY SINE Alu 1 250 -61 459 239 37 12 chrX 156408781 156408944 -20565196 - L1ME3A LINE L1 -2426 3720 3554 1435 196 13 90 chrX 156408945 156409332 -20564808 + MLT1A1 LTR MaLR 9 365 0 5424 234 85 24 chrX 156409332 156410633 -20563507 + MLT1A1-int LTR MaLR 1 1380 -355 1066 178 5 0 chrX 156410643 156410840 -20563300 + L1PBa LINE L1 3 200 -6663 9084 111 32 5 chrX 156410840 156412719 -20561421 + L1PBa LINE L1 634 2704 -4159 379 331 155 40 chrX 156412787 156413615 -20560525 + L1M4 LINE L1 2110 3032 -3114 230 192 19 39 chrX 156414042 156414094 -20560046 + L1MCa LINE L1 5 55 -6371 1710 102 4 8 chrX 156614094 156614330 -20359810 - AluSq SINE Alu -76 237 3 722 176 0 16 chrX 156614675 156614784 -20359356 + FLAM_C SINE Alu 5 113 -199 270 0 0 0 chrX 156614784 156614814 -20359326 + (TA)n Simple_repeat Simple_repeat 2 31 0 722 176 0 16 chrX 156614814 156614829 -20359311 + FLAM_C SINE Alu 113 127 -185 2164 116 0 3 chrX 156614949 156615250 -20358890 - AluSx SINE Alu -12 300 1 2024 136 0 0 chrX 156615333 156615627 -20358513 + AluJo SINE Alu 1 294 -18 2222 89 0 0 chrX 156615631 156615949 -20358191 + AluSx SINE Alu 1 318 0 411 59 0 0 chrX 156615949 156616000 -20358140 + AluSq SINE Alu 1 51 -262 3758 191 28 78 chrX 156616000 156617020 -20357120 + LTR5 LTR ERVK 1 969 0 1702 96 7 75 chrX 156617024 156617304 -20356836 + AluSq SINE Alu 43 303 -10 2210 83 159 2 chrX 156617568 156617964 -20356176 + MER75 DNA T2_type 12 469 -45 1756 79 0 9 chrX 156617964 156618193 -20355947 - AluSq SINE Alu -86 227 1 2326 80 3 0 chrX 156618363 156618662 -20355478 - AluSq SINE Alu -13 300 1 308 237 0 0 chrX 156618776 156618852 -20355288 - L1MEd LINE L1 -3208 2921 2846 1887 152 7 7 chrX 156618919 156619222 -20354918 + AluSx SINE Alu 5 307 -5 414 143 0 82 chrX 156619224 156619322 -20354818 - MER2 DNA MER2_type -136 209 120 637 144 0 27 chrX 156619334 156619445 -20354695 + FLAM_C SINE Alu 34 141 -2 2129 102 20 0 chrX 156619457 156619752 -20354388 + AluSg SINE Alu 1 301 -9 750 98 65 0 chrX 156619752 156619875 -20354265 - MER2 DNA MER2_type -213 132 2 331 224 0 0 chrX 156619887 156619954 -20354186 - MER58A DNA MER1_type 0 115 49 2109 103 10 0 chrX 156620132 156620424 -20353716 - AluSx SINE Alu -17 295 1 607 333 189 40 chrX 156620450 156620705 -20353435 - L1MEd LINE L1 -4936 1183 967 1834 155 3 7 chrX 156620705 156621001 -20353139 - AluJb SINE Alu -17 295 1 607 333 189 40 chrX 156621001 156621337 -20352803 - L1MEd LINE L1 -5152 967 504 297 51 0 0 chrX 156621585 156621624 -20352516 + (TG)n Simple_repeat Simple_repeat 2 40 0 192 40 0 0 chrX 156621623 156621648 -20352492 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 1256 164 164 0 chrX 156621648 156621892 -20352248 - AluJb SINE Alu -28 284 1 2193 104 0 25 chrX 156622726 156623043 -20351097 + AluSc SINE Alu 1 309 0 2034 120 27 0 chrX 156623066 156623367 -20350773 + AluSg SINE Alu 1 309 -1 2279 109 0 0 chrX 156623382 156623694 -20350446 + AluSx SINE Alu 1 312 0 1185 121 6 0 chrX 156623711 156623884 -20350256 + AluJb SINE Alu 137 310 -2 1407 149 0 14 chrX 156624297 156624519 -20349621 - AluSq SINE Alu -94 219 1 226 125 31 94 chrX 156625227 156625291 -20348849 + MLT1C LTR MaLR 67 126 -341 243 219 68 0 chrX 156625417 156625490 -20348650 + MLT1C LTR MaLR 361 438 -29 352 293 66 36 chrX 156627788 156627955 -20346185 - MIR3 SINE MIR -32 176 5 283 282 84 31 chrX 156630980 156631058 -20343082 + L1M4 LINE L1 3011 3083 -3063 2154 128 16 0 chrX 156631058 156631363 -20342777 + AluSq SINE Alu 1 310 -3 283 282 84 31 chrX 156631363 156631511 -20342629 + L1M4 LINE L1 3083 3249 -2897 2237 101 0 3 chrX 156631529 156631835 -20342305 + AluY SINE Alu 1 305 -6 2166 95 10 0 chrX 156631841 156632135 -20342005 + AluSp SINE Alu 1 297 -16 417 293 31 117 chrX 156632169 156632423 -20341717 + L1M4 LINE L1 3498 3677 -2469 349 165 200 43 chrX 156632423 156632496 -20341644 + AluJo/FLAM SINE Alu 1 61 -241 2012 123 3 3 chrX 156632496 156632788 -20341352 - AluJb SINE Alu -9 303 12 349 165 200 43 chrX 156632788 156632829 -20341311 + AluJo/FLAM SINE Alu 61 133 -169 417 293 31 117 chrX 156632829 156633145 -20340995 + L1M4 LINE L1 3677 4019 -2127 1980 121 22 26 chrX 156633150 156633463 -20340677 + AluSx SINE Alu 1 312 0 687 221 101 14 chrX 156633624 156633832 -20340308 + L1ME2 LINE L1 5589 5814 -350 389 258 129 23 chrX 156633858 156633990 -20340150 + L1ME2 LINE L1 5942 6087 -79 406 278 10 56 chrX 156634066 156634230 -20339910 + L1ME3A LINE L1 5982 6137 -33 2198 98 0 0 chrX 156634230 156634525 -20339615 - AluSg SINE Alu -15 295 1 406 278 10 56 chrX 156634525 156634558 -20339582 + L1ME3A LINE L1 6137 6170 0 2079 111 17 0 chrX 156634566 156634693 -20339447 + AluSx SINE Alu 3 126 -186 2219 103 3 3 chrX 156634693 156634993 -20339147 + AluSc SINE Alu 1 300 -9 2079 111 17 0 chrX 156634993 156635162 -20338978 + AluSx SINE Alu 126 304 -8 195 129 0 0 chrX 156635953 156635984 -20338156 + (AGCTG)n Simple_repeat Simple_repeat 1 31 0 185 298 0 0 chrX 156636192 156636249 -20337891 - MIR SINE MIR -84 124 68 260 303 0 0 chrX 156636741 156636817 -20337323 - MIR3 SINE MIR -29 179 104 208 301 24 12 chrX 156637176 156637259 -20336881 + L2 LINE L2 2874 2957 -356 203 338 15 0 chrX 156637908 156637976 -20336164 - MIR SINE MIR -64 144 76 2092 112 0 32 chrX 156638192 156638366 -20335774 - AluSx SINE Alu -9 303 125 2200 90 20 0 chrX 156638366 156638666 -20335474 - AluY SINE Alu -5 306 1 180 0 0 0 chrX 156638667 156638687 -20335453 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2233 79 0 0 chrX 156638687 156638965 -20335175 - AluSc SINE Alu -31 278 1 2092 112 0 32 chrX 156638965 156639100 -20335040 - AluSx SINE Alu -185 127 1 183 256 0 0 chrX 156639442 156639481 -20334659 - MIR SINE MIR -108 100 62 2369 79 0 3 chrX 156640058 156640362 -20333778 + AluSx SINE Alu 1 303 -9 208 307 11 37 chrX 156641020 156641134 -20333006 + MIR SINE MIR 10 124 -84 21 0 0 0 chrX 156641269 156641290 -20332850 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chrX 156641381 156641404 -20332736 + GC_rich Low_complexity Low_complexity 1 23 0 1069 279 35 0 chrX 156642687 156642999 -20331141 - L2 LINE L2 -398 2916 2594 387 222 62 117 chrX 156643008 156643063 -20331077 - L1MC5 LINE L1 -37 7924 7867 2194 107 0 7 chrX 156643063 156643371 -20330769 - AluSx SINE Alu -6 306 1 387 222 62 117 chrX 156643371 156643477 -20330663 - L1MC5 LINE L1 -94 7867 7772 2250 90 30 0 chrX 156643486 156643786 -20330354 - AluSc SINE Alu 0 309 1 1888 151 0 27 chrX 156643786 156644085 -20330055 - AluSx SINE Alu -21 291 1 1005 203 108 12 chrX 156644095 156644547 -20329593 - L1MB8 LINE L1 -1 6177 5634 323 235 110 22 chrX 156644553 156644689 -20329451 - L1MC5 LINE L1 -182 7779 7632 1110 256 180 7 chrX 156644697 156644740 -20329400 - L2 LINE L2 -774 2540 2506 375 23 0 0 chrX 156644740 156644784 -20329356 + (TG)n Simple_repeat Simple_repeat 1 44 0 1110 256 180 7 chrX 156644784 156645185 -20328955 - L2 LINE L2 -808 2506 2019 1819 105 0 26 chrX 156645185 156645313 -20328827 - AluSg SINE Alu -51 259 140 2241 82 0 7 chrX 156645313 156645616 -20328524 - AluY SINE Alu -9 302 2 1819 105 0 26 chrX 156645616 156645753 -20328387 - AluSg SINE Alu -170 140 1 711 292 89 16 chrX 156645753 156646133 -20328007 - MLT1C LTR MaLR -59 408 1 543 303 67 38 chrX 156646809 156647076 -20327064 - LTR16A LTR ERVL -19 431 157 845 216 121 20 chrX 156648112 156648311 -20325829 - MER20 DNA MER1_type 0 219 1 555 226 204 17 chrX 156648736 156648971 -20325169 + L1MB7 LINE L1 5905 6183 -1 2138 82 20 10 chrX 156648982 156649275 -20324865 + AluSx SINE Alu 1 296 -16 241 344 42 10 chrX 156649610 156649706 -20324434 - MIR SINE MIR -70 192 94 849 152 23 0 chrX 156649930 156650062 -20324078 + AluJo SINE Alu 1 135 -177 2281 97 0 0 chrX 156650087 156650385 -20323755 - AluSx SINE Alu -14 298 1 1475 253 38 2 chrX 156650951 156651374 -20322766 - MER77 LTR ERV1 -7 598 161 460 249 18 30 chrX 156651624 156651793 -20322347 - MLT1C LTR MaLR 0 467 301 2006 258 87 11 chrX 156651910 156652522 -20321618 - MER67B LTR ERV1 -3 658 1 763 229 113 0 chrX 156653616 156653882 -20320258 - MER68 LTR ERV1 -264 298 3 300 367 35 0 chrX 156654493 156654662 -20319478 + L2 LINE L2 1865 2039 -1275 203 347 16 32 chrX 156654664 156654788 -20319352 + L2 LINE L2 2310 2431 -883 249 88 0 0 chrX 156655107 156655141 -20318999 - U2 snRNA snRNA -152 36 3 670 130 0 10 chrX 156655389 156655489 -20318651 + AluJ/FLAM SINE Alu 1 99 -213 427 290 7 0 chrX 156655526 156655664 -20318476 - L1MC4 LINE L1 -370 7672 7534 1622 170 47 0 chrX 156655673 156655950 -20318190 - AluJb SINE Alu -22 290 1 299 311 93 33 chrX 156656658 156656809 -20317331 + L3 LINE CR1 1041 1200 -377 219 342 26 0 chrX 156657028 156657104 -20317036 + L3 LINE CR1 1485 1562 -15 2274 101 0 13 chrX 156657517 156657834 -20316306 - AluSq SINE Alu 0 313 1 215 275 0 38 chrX 156658773 156658853 -20315287 + C-rich Low_complexity Low_complexity 3 79 0 495 292 92 5 chrX 156659413 156659598 -20314542 - L1MC/D LINE L1 -1989 5819 5619 274 244 11 11 chrX 156659739 156659829 -20314311 - L1MC/D LINE L1 -2388 5420 5331 270 81 0 0 chrX 156659854 156659891 -20314249 + (TG)n Simple_repeat Simple_repeat 2 38 0 2317 87 0 0 chrX 156659892 156660192 -20313948 - AluSq SINE Alu -13 300 1 1024 81 0 7 chrX 156660192 156660328 -20313812 - AluSq/x SINE Alu -178 135 1 301 341 54 23 chrX 156660331 156660460 -20313680 - L1MC/D LINE L1 -804 5342 5210 962 171 24 0 chrX 156660475 156660639 -20313501 - FRAM SINE Alu -11 165 1 437 238 48 8 chrX 156661388 156661514 -20312626 - MLT1C LTR MaLR 0 467 337 755 73 73 7 chrX 156661514 156661664 -20312476 + CT-rich Low_complexity Low_complexity 4 163 0 952 190 6 0 chrX 156661666 156661840 -20312300 - AluSg/x SINE Alu -1 309 135 646 208 145 48 chrX 156661840 156662109 -20312031 - MLT1C LTR MaLR -115 352 58 207 292 72 6 chrX 156662183 156662278 -20311862 + MER5A DNA MER1_type 25 123 -55 416 247 19 31 chrX 156663331 156663493 -20310647 - MLT1C LTR MaLR -7 460 301 1990 258 87 11 chrX 156663610 156664219 -20309921 - MER67B LTR ERV1 -3 658 4 246 247 263 16 chrX 156664248 156664434 -20309706 + L2 LINE L2 2036 2267 -1047 1813 106 3 45 chrX 156665136 156665528 -20308612 - Charlie3 DNA MER1_type 0 2712 1 737 135 0 43 chrX 156665750 156665891 -20308249 - FLAM_C SINE Alu 0 143 9 274 160 0 0 chrX 156666031 156666081 -20308059 + MIR SINE MIR 100 149 -113 1026 202 22 14 chrX 156666259 156666482 -20307658 + L1MB7 LINE L1 5960 6184 0 803 107 49 3 chrX 156666600 156666928 -20307212 + CT-rich Low_complexity Low_complexity 1 343 0 665 113 0 43 chrX 156666931 156667046 -20307094 - FLAM_C SINE Alu -18 125 16 2042 190 45 7 chrX 156667999 156668446 -20305694 - MLT1C LTR MaLR -2 465 2 2322 90 0 6 chrX 156668514 156668846 -20305294 + L1PA13 LINE L1 5820 6149 -14 2283 80 0 0 chrX 156668982 156669256 -20304884 + AluSg SINE Alu 1 274 -36 2233 98 3 3 chrX 156669391 156669687 -20304453 - AluJb SINE Alu 0 312 17 1341 243 131 19 chrX 156670230 156670350 -20303790 + L1MC4 LINE L1 6473 6578 -1464 2083 170 43 17 chrX 156670350 156670553 -20303587 + MSTA LTR MaLR 1 197 -231 279 0 0 0 chrX 156670553 156670584 -20303556 + (TC)n Simple_repeat Simple_repeat 1 31 0 2083 170 43 17 chrX 156670584 156670797 -20303343 + MSTA LTR MaLR 197 428 0 1341 243 131 19 chrX 156670797 156671088 -20303052 + L1MC4 LINE L1 6578 6930 -1112 237 250 130 0 chrX 156671087 156671187 -20302953 + L1M4 LINE L1 3234 3346 -2800 * 211 129 48 0 chrX 156671317 156671379 -20302761 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 1728 177 0 3 chrX 156671381 156671664 -20302476 - AluJo SINE Alu -30 282 1 326 344 97 0 chrX 156671958 156672112 -20302028 + MIR SINE MIR 29 197 -65 1101 115 0 25 chrX 156672117 156672274 -20301866 - AluJb SINE Alu -22 290 138 1895 172 0 13 chrX 156673262 156673576 -20300564 + AluJb SINE Alu 1 310 -2 529 157 0 0 chrX 156673733 156673816 -20300324 - AluJ/FLAM SINE Alu -228 84 2 501 227 0 0 chrX 156674353 156674472 -20299668 + L1M4 LINE L1 3331 3449 -2697 * 572 71 24 0 chrX 156674464 156674548 -20299592 - L1M2 LINE L1 -638 5674 5589 3587 157 33 16 chrX 156674553 156675192 -20298948 + THE1-int LTR MaLR 628 1277 -303 1982 123 3 3 chrX 156676651 156676969 -20297171 + MSTA-int LTR MaLR 1334 1651 0 2319 100 126 5 chrX 156676969 156677350 -20296790 + MSTA LTR MaLR 1 427 -1 570 228 167 37 chrX 156677354 156677600 -20296540 + L1ME LINE L1 5495 5772 -398 1718 150 71 16 chrX 156678251 156678618 -20295522 - L1MA4 LINE L1 -5 6295 5909 225 0 0 0 chrX 156680033 156680058 -20294082 + (TTCTG)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chrX 156680145 156680167 -20293973 + (TGGGGG)n Simple_repeat Simple_repeat 4 25 0 1479 193 7 36 chrX 156681432 156681566 -20292574 + AluJo SINE Alu 1 137 -175 2353 83 0 74 chrX 156681566 156681903 -20292237 + AluSx SINE Alu 1 312 0 1479 193 7 36 chrX 156681903 156682069 -20292071 + AluJo SINE Alu 137 292 -20 882 162 0 42 chrX 156682078 156682245 -20291895 + FRAM SINE Alu 1 154 -22 1348 189 47 10 chrX 156682290 156682591 -20291549 - LTR36 LTR ERV1 0 611 300 485 237 8 0 chrX 156682616 156682734 -20291406 - L1MEc LINE L1 -5651 745 627 330 277 77 23 chrX 156682744 156682874 -20291266 + L1ME LINE L1 5482 5618 -503 4139 189 36 57 chrX 156682879 156683855 -20290285 + LTR5 LTR ERVK 1 955 -14 4034 156 20 3 chrX 156683867 156684551 -20289589 + HERVK LTR ERVK 1 696 -6547 5153 139 1 24 chrX 156684677 156685548 -20288592 + HERVK LTR ERVK 3006 3856 -3387 266 224 59 88 chrX 156685549 156685622 -20288518 + L1MC/D LINE L1 5348 5268 -912 2138 149 0 9 chrX 156685622 156685937 -20288203 - AluSx SINE Alu 0 312 1 266 224 59 88 chrX 156685937 156686080 -20288060 + L1MC/D LINE L1 5267 5413 -767 2667 91 3 0 chrX 156686328 156686691 -20287449 + THE1B LTR MaLR 1 364 0 225 292 0 15 chrX 156686824 156686889 -20287251 - L2 LINE L2 -5 3308 3245 2541 125 39 0 chrX 156687461 156687870 -20286270 + MSTB LTR MaLR 2 426 0 2339 149 19 14 chrX 156688193 156688623 -20285517 + MSTB1 LTR MaLR 1 432 0 1625 208 57 38 chrX 156689179 156689632 -20284508 + MLT1C LTR MaLR 6 467 0 453 234 182 22 chrX 156689645 156689866 -20284274 + MER5C DNA MER1_type 33 294 -30 883 23 45 34 chrX 156689866 156690043 -20284097 + (GA)n Simple_repeat Simple_repeat 2 180 0 2439 81 0 17 chrX 156691405 156691749 -20282391 + THE1B LTR MaLR 1 338 -26 1597 155 40 15 chrX 156691751 156692074 -20282066 + MER61B LTR ERV1 1 425 0 1261 163 0 22 chrX 156692359 156692421 -20281719 + AluJb SINE Alu 83 145 -167 4429 47 50 3 chrX 156692421 156693002 -20281138 - LTR14B LTR ERVK 0 608 1 1261 163 0 22 chrX 156693002 156693166 -20280974 + AluJb SINE Alu 145 304 -8 360 0 0 0 chrX 156694906 156694946 -20279194 + (TG)n Simple_repeat Simple_repeat 1 40 0 300 211 0 0 chrX 156696022 156696098 -20278042 + (TG)n Simple_repeat Simple_repeat 2 77 0 1719 140 0 29 chrX 156697347 156697660 -20276480 - AluJo SINE Alu 0 325 21 848 226 43 4 chrX 156697660 156697894 -20276246 - L2 LINE L2 -375 2939 2697 940 183 96 0 chrX 156698218 156698415 -20275725 - MSTB1 LTR MaLR 0 432 217 2653 46 0 3 chrX 156699250 156699554 -20274586 + AluY SINE Alu 1 303 -8 402 286 81 0 chrX 156699576 156699761 -20274379 + L1M3 LINE L1 3371 3570 -2576 1761 155 7 11 chrX 156699773 156700057 -20274083 + AluJb SINE Alu 8 290 -22 881 192 0 28 chrX 156700354 156700568 -20273572 - L1 LINE L1 -813 5333 5126 * 1263 231 54 3 chrX 156700552 156700885 -20273255 + L1M3 LINE L1 4846 5195 -951 1815 174 142 41 chrX 156701351 156701906 -20272234 + L1M3 LINE L1 5187 5778 -402 529 123 0 0 chrX 156701906 156701987 -20272153 + AluJ/FRAM SINE Alu 218 298 -14 204 40 0 0 chrX 156702258 156702283 -20271857 + (T)n Simple_repeat Simple_repeat 1 25 0 4062 193 30 54 chrX 156702633 156703626 -20270514 - LTR5 LTR ERVK 0 969 1 5425 134 1 1 chrX 156703628 156704451 -20269689 - HERVK LTR ERVK -2 7241 6419 2288 163 45 13 chrX 156705031 156705478 -20268662 + LOR1b LTR ERV1 1 461 0 333 305 38 15 chrX 156706446 156706577 -20267563 + LTR16C LTR ERVL 136 269 -222 331 36 0 55 chrX 156706823 156706878 -20267262 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 806 65 0 0 chrX 156706879 156706986 -20267154 - L1PA6 LINE L1 -2 6152 6046 3001 65 25 0 chrX 156706986 156707388 -20266752 + L1PA7 LINE L1 5619 6030 -124 322 207 0 49 chrX 156707416 156707498 -20266642 - MIR SINE MIR 0 262 185 344 229 53 15 chrX 156707502 156707633 -20266507 + L1ME4a LINE L1 5981 6116 -5 242 214 71 0 chrX 156709027 156709083 -20265057 + L2 LINE L2 3197 3256 -57 511 301 16 5 chrX 156710266 156710452 -20263688 - HERVL LTR ERVL -1198 4456 4269 1071 208 15 0 chrX 156711191 156711465 -20262675 - L1 LINE L1 -3009 4556 4279 1710 196 8 26 chrX 156711471 156711853 -20262287 + THE1C LTR MaLR 1 375 0 5334 140 62 42 chrX 156711853 156712032 -20262108 + THE1C-int LTR MaLR 1 175 -1405 2437 65 7 0 chrX 156712032 156712324 -20261816 - AluY SINE Alu -17 294 1 5334 140 62 42 chrX 156712324 156712661 -20261479 + THE1C-int LTR MaLR 175 504 -1076 1092 61 14 0 chrX 156712661 156712809 -20261331 - L1PA10 LINE L1 -3 6165 6016 5334 140 62 42 chrX 156712809 156713283 -20260857 + THE1C-int LTR MaLR 504 1011 -569 1506 205 125 69 chrX 156713320 156713940 -20260200 + MER50 LTR ERV1 84 734 0 1186 143 88 14 chrX 156713940 156714156 -20259984 + THE1C LTR MaLR 144 375 0 3183 211 21 13 chrX 156714157 156715126 -20259014 - L1 LINE L1 -3289 4276 3295 579 191 19 0 chrX 156715162 156715267 -20258873 - AluJb SINE Alu -23 289 183 2273 78 0 3 chrX 156715509 156715804 -20258336 + AluY SINE Alu 1 294 -17 531 163 0 10 chrX 156715804 156715891 -20258249 - FLAM_C SINE Alu -178 134 47 369 275 125 19 chrX 156717549 156717709 -20256431 - L1ME LINE L1 -463 5658 5482 493 237 8 0 chrX 156717719 156717837 -20256303 + L1MEc LINE L1 627 745 -5651 1281 201 59 10 chrX 156717862 156718151 -20255989 + LTR36 LTR ERV1 300 602 -9 1242 208 0 24 chrX 156718205 156718498 -20255642 - AluJo SINE Alu -26 286 1 15918 147 9 10 chrX 156718925 156721961 -20252179 - HERVK LTR ERVK -1154 6162 3255 3422 59 0 0 chrX 156722061 156722500 -20251640 - L1P LINE L1 -854 5292 4854 2789 229 35 22 chrX 156772520 156773234 -20200906 - L1ME LINE L1 -1819 4327 3488 2165 138 0 0 chrX 156773234 156773545 -20200595 - AluSq SINE Alu -2 311 1 2789 229 35 22 chrX 156773545 156773602 -20200538 - L1ME LINE L1 -2658 3488 3433 1155 216 54 10 chrX 156773710 156774006 -20200134 + L1M4 LINE L1 3525 3833 -2313 288 186 0 0 chrX 156774007 156774050 -20200090 + Alu SINE Alu 2 44 -258 2401 90 0 0 chrX 156774230 156774529 -20199611 + AluSx SINE Alu 1 299 -13 1612 181 38 10 chrX 156774550 156774843 -20199297 + AluJo SINE Alu 1 301 -11 930 276 12 16 chrX 156774843 156775089 -20199051 + ERVL LTR ERVL 2204 2448 -3316 2402 89 0 0 chrX 156775098 156775413 -20198727 - AluYb8 SINE Alu -3 315 1 409 254 24 16 chrX 156775416 156775542 -20198598 + MLT1G LTR MaLR 2 128 -462 2209 129 0 0 chrX 156776286 156776596 -20197544 - AluSx SINE Alu -2 310 1 277 215 28 6 chrX 156776799 156776910 -20197230 - MER20 DNA MER1_type -2 217 44 1152 160 10 25 chrX 156777149 156777349 -20196791 - AluJo SINE Alu -115 197 1 656 239 44 85 chrX 156777349 156777525 -20196615 + L1M4 LINE L1 4323 4484 -1662 2248 121 0 6 chrX 156777525 156777839 -20196301 + AluSx SINE Alu 1 312 0 656 239 44 85 chrX 156777839 156777955 -20196185 + L1M4 LINE L1 4484 4603 -1543 2545 59 0 10 chrX 156777967 156778274 -20195866 + AluY SINE Alu 1 304 -7 2047 80 49 0 chrX 156778384 156778647 -20195493 - AluSx SINE Alu -36 276 1 464 296 64 0 chrX 156778652 156778824 -20195316 - HERVL-B1 LTR ERVL -5471 183 1 1560 237 105 33 chrX 156778824 156778873 -20195267 - MLT2B1 LTR ERVL 0 520 476 276 30 0 0 chrX 156778873 156778906 -20195234 + (CA)n Simple_repeat Simple_repeat 2 34 0 1560 237 105 33 chrX 156778906 156779341 -20194799 - MLT2B1 LTR ERVL -44 476 1 1658 115 24 4 chrX 156779341 156779593 -20194547 + L1MB4 LINE L1 5924 6180 0 543 285 79 8 chrX 156779893 156780160 -20193980 + L1ME LINE L1 592 877 -5242 853 199 20 0 chrX 156780205 156780401 -20193739 + L1ME LINE L1 4275 4474 -1655 310 271 41 0 chrX 156780459 156780581 -20193559 + L1PB2 LINE L1 4464 4590 -1556 3786 245 44 30 chrX 156780690 156780947 -20193193 - L1MEc LINE L1 -2401 3814 3562 2451 97 0 0 chrX 156780947 156781258 -20192882 - AluSq SINE Alu -2 311 1 3786 245 44 30 chrX 156781258 156781681 -20192459 - L1MEc LINE L1 -2653 3562 3146 2269 107 0 3 chrX 156781681 156781979 -20192161 - AluSx SINE Alu -15 297 1 3786 245 44 30 chrX 156781979 156782786 -20191354 - L1MEc LINE L1 -3069 3146 2287 2511 88 0 0 chrX 156782786 156783094 -20191046 - AluSc SINE Alu -1 308 1 3786 245 44 30 chrX 156783094 156783388 -20190752 - L1MEc LINE L1 -3928 2287 1999 465 156 8 102 chrX 156783499 156783627 -20190513 - L1MC5 LINE L1 -695 7266 7151 327 176 15 29 chrX 156783627 156783695 -20190445 + L2 LINE L2 1840 1906 -1408 237 173 58 0 chrX 156783692 156783744 -20190396 + MIR SINE MIR 158 212 -50 * 1404 233 199 0 chrX 156783979 156784447 -20189693 - L2 LINE L2 -358 2956 2396 252 232 105 11 chrX 156784677 156784772 -20189368 - L1ME LINE L1 -378 5784 5681 232 174 11 68 chrX 156784828 156784921 -20189219 - L1ME LINE L1 -797 5373 5298 233 291 0 18 chrX 156786386 156786441 -20187699 - L2 LINE L2 -9 3304 3251 235 167 0 0 chrX 156786839 156786875 -20187265 + MER74C LTR ERVL 360 395 -65 1459 259 43 24 chrX 156787496 156788221 -20185919 + L1ME LINE L1 4885 5624 -529 930 254 0 0 chrX 156789076 156789296 -20184844 + L1 LINE L1 2849 3068 -3078 * 6532 117 25 6 chrX 156789291 156790705 -20183435 + L1PB2 LINE L1 4718 6150 -1 297 261 23 11 chrX 156790892 156790980 -20183160 + L1MC4a LINE L1 11 99 -6020 282 213 0 16 chrX 156790991 156791052 -20183088 - MLT1H LTR MaLR -396 153 94 194 242 152 0 chrX 156791107 156791173 -20182967 - MIR SINE MIR -37 225 150 273 204 0 0 chrX 156791178 156791232 -20182908 - L1MB8 LINE L1 -15 6163 6110 267 114 0 0 chrX 156791238 156791273 -20182867 + tRNA-Lys-AAG tRNA tRNA 4 38 -38 902 105 80 43 chrX 156791273 156791338 -20182802 - L1MB7 LINE L1 -60 6124 6063 1699 162 126 36 chrX 156791338 156791672 -20182468 - MLT1A1 LTR MaLR -1 364 1 902 105 80 43 chrX 156791672 156791768 -20182372 - L1MB7 LINE L1 -121 6063 5957 573 326 96 9 chrX 156791804 156792126 -20182014 + L1MC4a LINE L1 452 801 -5318 * 2136 266 72 32 chrX 156792120 156792283 -20181857 + L1MC4a LINE L1 3797 3952 -2177 1911 145 10 22 chrX 156792283 156792594 -20181546 + AluSx SINE Alu 1 307 -5 2136 266 72 32 chrX 156792594 156793409 -20180731 + L1MC4a LINE L1 3952 4815 -1314 352 297 132 38 chrX 156794284 156794624 -20179516 + L2 LINE L2 2027 2398 -916 1968 106 56 3 chrX 156794675 156794959 -20179181 + AluSx SINE Alu 1 299 -13 679 294 228 30 chrX 156794983 156795506 -20178634 + L3 LINE CR1 795 1470 -107 194 385 39 0 chrX 156795591 156795721 -20178419 + L2 LINE L2 2460 2594 -720 396 221 134 71 chrX 156795813 156795940 -20178200 + LTR67 LTR ERVL 10 144 -413 1429 105 1 0 chrX 156796200 156796441 -20177699 + L1MA4 LINE L1 5666 5906 -269 500 283 75 9 chrX 156796422 156796648 -20177492 + L1MC4a LINE L1 5814 6054 -1754 * 25 0 0 0 chrX 156796677 156796702 -20177438 + AT_rich Low_complexity Low_complexity 1 25 0 799 260 187 8 chrX 156796847 156797370 -20176770 + L1MC4a LINE L1 5334 5989 -1802 617 212 38 33 chrX 156797397 156797581 -20176559 + L1MCc LINE L1 26 210 -6213 575 181 26 26 chrX 156797780 156797896 -20176244 - MER20 DNA MER1_type 0 219 104 2530 119 30 25 chrX 156797911 156798272 -20175868 + THE1B LTR MaLR 2 364 0 2141 116 23 78 chrX 156798277 156798348 -20175792 - THE1C LTR MaLR 0 375 302 2390 98 0 0 chrX 156798348 156798655 -20175485 + AluSg SINE Alu 1 307 -3 2141 116 23 78 chrX 156798655 156798979 -20175161 - THE1C LTR MaLR -73 302 2 1275 187 14 28 chrX 156799010 156799242 -20174898 + L1M4 LINE L1 2795 3024 -3122 1867 129 126 3 chrX 156799242 156799568 -20174572 - MER47A DNA MER2_type 0 366 1 1275 187 14 28 chrX 156799568 156799619 -20174521 + L1M4 LINE L1 3024 3074 -3072 1242 206 8 8 chrX 156799656 156799909 -20174231 + L1ME1 LINE L1 5866 6118 -48 262 153 119 0 chrX 156799915 156799974 -20174166 + LTR66 LTR ERVL 374 439 -171 1301 217 44 34 chrX 156800127 156800152 -20173988 + L1MCc LINE L1 2283 2306 -4816 216 0 0 0 chrX 156800152 156800176 -20173964 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1301 217 44 34 chrX 156800176 156800533 -20173607 + L1MCc LINE L1 2306 2669 -4453 2296 184 13 56 chrX 156800641 156800688 -20173452 - L1M4 LINE L1 -908 5238 5191 2087 120 27 0 chrX 156800688 156800770 -20173370 - AluSq SINE Alu -13 300 222 189 0 0 0 chrX 156800770 156800791 -20173349 + (TCTCTG)n Simple_repeat Simple_repeat 3 23 0 2087 120 27 0 chrX 156800791 156801000 -20173140 - AluSq SINE Alu -91 222 1 2296 184 13 56 chrX 156801000 156801076 -20173064 - L1M4 LINE L1 -955 5191 5113 1362 171 108 21 chrX 156801076 156801362 -20172778 - AluJo SINE Alu 0 312 2 2296 184 13 56 chrX 156801362 156801770 -20172370 - L1M4 LINE L1 -1033 5113 4729 2766 217 63 12 chrX 156801781 156802449 -20171691 - L1M4 LINE L1 -1828 4318 3617 832 177 0 0 chrX 156802487 156802611 -20171529 - FLAM_C SINE Alu -9 124 1 1694 310 95 25 chrX 156803329 156804423 -20169717 + MERVL LTR ERVL 2403 3614 -2040 449 240 20 48 chrX 156804575 156804977 -20169163 + MERVL LTR ERVL 4188 4641 -871 421 316 75 9 chrX 156804986 156805198 -20168942 + MIR SINE MIR 3 228 -34 47 67 0 0 chrX 156805851 156805940 -20168200 + GC_rich Low_complexity Low_complexity 1 89 0 30 93 0 0 chrX 156806088 156806174 -20167966 + GC_rich Low_complexity Low_complexity 1 86 0 380 283 101 18 chrX 156808733 156808952 -20165188 - L1MC4a LINE L1 -1875 5933 5697 465 239 53 0 chrX 156808968 156809081 -20165059 - MIR SINE MIR -1 261 143 503 250 80 27 chrX 156809094 156809282 -20164858 - L1MC4a LINE L1 -881 5265 5068 1338 147 13 22 chrX 156809292 156809516 -20164624 - AluJb SINE Alu -90 222 1 554 262 21 11 chrX 156809539 156809726 -20164414 - L1MC4a LINE L1 -1112 5034 4846 1316 88 0 18 chrX 156809730 156809901 -20164239 + AluSq SINE Alu 5 172 -141 358 348 102 20 chrX 156810097 156810402 -20163738 + L2 LINE L2 2984 3313 0 414 160 27 0 chrX 156811054 156811129 -20163011 + L2 LINE L2 1629 1705 -1609 227 265 72 24 chrX 156812213 156812296 -20161844 - MER20B DNA MER1_type -696 87 1 675 254 32 11 chrX 156812456 156812645 -20161495 + MIR SINE MIR 47 239 -23 257 286 156 36 chrX 156812723 156813108 -20161032 - L1MC4a LINE L1 -1927 4219 3789 243 0 0 0 chrX 156814131 156814158 -20159982 + (TC)n Simple_repeat Simple_repeat 2 28 0 243 88 0 0 chrX 156814160 156814194 -20159946 + (CA)n Simple_repeat Simple_repeat 1 34 0 430 280 121 29 chrX 156815132 156815339 -20158801 - MIR SINE MIR -1 261 36 250 248 128 16 chrX 156815582 156815707 -20158433 + L2 LINE L2 3159 3297 -16 263 241 46 35 chrX 156815734 156815821 -20158319 - L1MC4 LINE L1 -1341 6701 6614 216 0 0 0 chrX 156815821 156815845 -20158295 + (TA)n Simple_repeat Simple_repeat 2 25 0 193 71 0 71 chrX 156818319 156818361 -20155779 + (TTTC)n Simple_repeat Simple_repeat 4 42 0 1668 133 74 0 chrX 156818526 156818796 -20155344 + MER7A DNA MER2_type 59 346 0 1012 214 39 63 chrX 156818799 156818877 -20155263 + L1MC5 LINE L1 6906 6984 -977 2053 41 0 4 chrX 156818877 156819121 -20155019 + AluY SINE Alu 68 310 -1 1012 214 39 63 chrX 156819121 156819374 -20154766 + L1MC5 LINE L1 6984 7229 -732 336 234 32 48 chrX 156819420 156819544 -20154596 + L1MC5 LINE L1 7393 7514 -447 * 4298 183 36 57 chrX 156819512 156819709 -20154431 + L1MA9 LINE L1 5168 5368 -944 2149 173 18 28 chrX 156819709 156820109 -20154031 - MSTD LTR MaLR 0 396 1 4298 183 36 57 chrX 156820109 156821050 -20153090 + L1MA9 LINE L1 5368 6274 -38 2283 98 7 10 chrX 156821338 156821645 -20152495 - AluSq SINE Alu -7 306 1 312 176 0 0 chrX 156821709 156821760 -20152380 - L2 LINE L2 -4 3268 3218 369 248 53 98 chrX 156822286 156822419 -20151721 + MIR3 SINE MIR 14 140 -68 2092 115 11 3 chrX 156822530 156822860 -20151280 + AluSx SINE Alu 1 312 0 189 235 188 24 chrX 156822903 156822988 -20151152 + MIR3 SINE MIR 90 188 -20 1685 154 64 82 chrX 156823366 156823743 -20150397 + MLT1B LTR MaLR 21 390 0 1815 271 104 47 chrX 156823779 156824829 -20149311 + L1MEc LINE L1 34 1143 -5253 325 244 12 12 chrX 156824849 156824935 -20149205 - MER5A DNA MER1_type -25 164 79 2009 254 90 35 chrX 156824993 156826018 -20148122 + L2 LINE L2 2188 3272 0 265 208 0 0 chrX 156826136 156826184 -20147956 - L2 LINE L2 -50 3222 3175 330 323 10 0 chrX 156827196 156827295 -20146845 + L2 LINE L2 3191 3290 -23 1037 223 71 10 chrX 156827325 156827635 -20146505 + L1MD2 LINE L1 6020 6348 -11 330 291 25 19 chrX 156827636 156827794 -20146346 + L1MEc LINE L1 2134 2292 -4104 186 310 69 0 chrX 156827794 156827881 -20146259 - L2 LINE L2 -20 3293 3201 223 273 0 0 chrX 156828243 156828298 -20145842 - MIR SINE MIR -61 147 93 371 234 81 9 chrX 156829619 156829730 -20144410 + L3 LINE CR1 676 794 -783 591 196 0 38 chrX 156829943 156830076 -20144064 + L1MB4 LINE L1 6051 6178 -2 495 258 47 47 chrX 156830267 156830500 -20143640 - MIR SINE MIR -16 246 14 261 173 19 0 chrX 156830867 156830919 -20143221 + L2 LINE L2 3220 3272 0 2858 25 0 0 chrX 156831175 156831491 -20142649 - AluYb8 SINE Alu -2 316 1 2360 245 56 9 chrX 156831494 156832046 -20142094 + MLT1G LTR MaLR 2 579 -11 386 343 0 0 chrX 156832066 156832200 -20141940 + ERVL LTR ERVL 2447 2580 -3184 617 321 57 11 chrX 156832270 156832532 -20141608 + ERVL LTR ERVL 4723 4996 -768 322 214 15 12 chrX 156832550 156832635 -20141505 - MLT1J LTR MaLR -331 180 108 2972 156 34 9 chrX 156834129 156834654 -20139486 - L1MB7 LINE L1 -98 6086 5549 334 289 91 69 chrX 156834664 156834896 -20139244 - ERVL LTR ERVL -2304 3460 3224 * 536 319 34 5 chrX 156834891 156835095 -20139045 - ERVL LTR ERVL -2639 3015 2806 486 296 7 0 chrX 156835196 156835338 -20138802 - ERVL LTR ERVL -3487 2277 2135 340 269 113 38 chrX 156835421 156835659 -20138481 - ERVL LTR ERVL -3812 1952 1697 991 190 30 46 chrX 156835835 156836098 -20138042 + Charlie5 DNA MER1_type 2360 2618 0 3059 112 76 134 chrX 156837299 156837564 -20136576 - Tigger3(Golem) DNA MER2_type -10 3019 2740 1977 82 57 7 chrX 156837564 156837844 -20136296 + AluSx SINE Alu 1 294 -18 3059 112 76 134 chrX 156837844 156838366 -20135774 - Tigger3(Golem) DNA MER2_type -289 2740 2278 572 173 48 10 chrX 156838357 156838461 -20135679 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2564 72 0 0 chrX 156841552 156841858 -20132282 - AluY SINE Alu -5 306 1 2873 10 0 6 chrX 156842416 156842728 -20131412 + AluYb8 SINE Alu 5 314 -4 592 153 0 41 chrX 156843190 156843288 -20130852 + AluJ/FLAM SINE Alu 2 95 -217 2021 143 23 7 chrX 156843895 156844202 -20129938 + AluSx SINE Alu 1 312 0 1155 90 39 7 chrX 156844638 156844766 -20129374 - MER4A LTR ERV1 -343 321 198 384 22 0 0 chrX 156844766 156844811 -20129329 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1155 90 39 7 chrX 156844811 156844929 -20129211 - MER4A LTR ERV1 -466 198 1 18200 124 45 32 chrX 156844932 156848198 -20125942 - MER4A-int LTR ERV1 0 6598 3291 288 0 0 0 chrX 156849439 156849470 -20124670 - MER4A-int LTR ERV1 -6023 735 705 7285 128 23 47 chrX 156849470 156850151 -20123989 - MER4A-int LTR ERV1 -4556 2202 1506 2136 74 46 3 chrX 156850151 156850436 -20123704 + AluY SINE Alu 1 297 -14 7285 128 23 47 chrX 156850436 156851704 -20122436 - MER4A-int LTR ERV1 -5252 1506 189 349 241 148 9 chrX 156851703 156851811 -20122329 - MER4A-int LTR ERV1 -4107 2224 2102 * 1164 91 0 0 chrX 156851811 156851965 -20122175 + LTR9 LTR ERV1 1 154 -458 * 2416 123 20 0 chrX 156851954 156852304 -20121836 + LTR9 LTR ERV1 256 612 0 1093 220 39 16 chrX 156852304 156852559 -20121581 - MER4A-int LTR ERV1 -4226 2105 1845 304 118 0 118 chrX 156852606 156852691 -20121449 - MER4A-int LTR ERV1 -5773 825 751 2940 98 183 12 chrX 156852744 156853242 -20120898 - MER4A-int LTR ERV1 -6015 583 1 3569 106 36 45 chrX 156853244 156853847 -20120293 - MER4A LTR ERV1 0 600 3 435 198 0 54 chrX 156853848 156853959 -20120181 + L1 LINE L1 2412 2516 -3630 5381 90 48 38 chrX 156854072 156854152 -20119988 - L1MA1 LINE L1 -190 6112 6034 1985 129 37 7 chrX 156854152 156854447 -20119693 - AluSx SINE Alu -8 304 1 5381 90 48 38 chrX 156854447 156855260 -20118880 - L1MA1 LINE L1 -268 6034 5211 1967 135 0 0 chrX 156855254 156855557 -20118583 - L1MA1 LINE L1 -1196 4950 4648 * 5939 30 0 16 chrX 156856258 156856933 -20117207 - SVA Other Other 0 1386 723 212 167 0 0 chrX 156859211 156859247 -20114893 + GA-rich Low_complexity Low_complexity 2 37 0 207 0 0 0 chrX 156859778 156859801 -20114339 + (GAA)n Simple_repeat Simple_repeat 2 24 0 2209 92 26 7 chrX 156860968 156861274 -20112866 + AluSx SINE Alu 1 312 0 2073 95 4 0 chrX 156862679 156862953 -20111187 - AluSx SINE Alu -8 304 30 270 0 0 0 chrX 156863053 156863083 -20111057 + (CA)n Simple_repeat Simple_repeat 2 31 0 1226 271 112 12 chrX 156863094 156863578 -20110562 + L1ME3A LINE L1 3534 4065 -2081 823 109 0 0 chrX 156863597 156863707 -20110433 - FLAM_C SINE Alu -33 110 1 244 298 0 0 chrX 156863707 156863764 -20110376 + L1ME3A LINE L1 4056 4112 -2034 1331 233 124 76 chrX 156863802 156864966 -20109174 + L1ME3A LINE L1 4769 5992 -178 797 123 26 0 chrX 156865078 156865192 -20108948 + AluJo SINE Alu 20 136 -176 841 263 230 17 chrX 156865299 156865720 -20108420 + L1MC/D LINE L1 5197 5709 -752 1065 204 0 28 chrX 156867679 156867895 -20106245 + MER6B DNA MER2_type 1 210 0 40 21 0 0 chrX 156868338 156868385 -20105755 + AT_rich Low_complexity Low_complexity 1 47 0 186 364 36 9 chrX 156869484 156869594 -20104546 + L2 LINE L2 2384 2496 -818 232 382 26 13 chrX 156869670 156869822 -20104318 + L2 LINE L2 2715 2868 -446 359 169 11 180 chrX 156870468 156870646 -20103494 + MER112 DNA MER1_type 8 155 -105 212 250 70 50 chrX 156870900 156871000 -20103140 + MIR3 SINE MIR 5 106 -102 2563 74 0 0 chrX 156871644 156871956 -20102184 + AluSx SINE Alu 1 312 0 255 271 122 28 chrX 156872065 156872172 -20101968 + L2 LINE L2 3153 3269 -3 582 250 10 25 chrX 156872234 156872438 -20101702 - L1M1 LINE L1 -751 5491 5294 2349 87 3 10 chrX 156873024 156873324 -20100816 + AluSx SINE Alu 1 298 -14 305 121 273 0 chrX 156875119 156875185 -20098955 + MER46C DNA MER2_type 4 87 -251 267 175 0 0 chrX 156875244 156875284 -20098856 + AluJo SINE Alu 134 173 -129 257 186 43 71 chrX 156875261 156875331 -20098809 + AluYb8 SINE Alu 236 303 -5 * 547 204 155 14 chrX 156875336 156875478 -20098662 + MER46C DNA MER2_type 156 317 -21 337 264 131 13 chrX 156875689 156875889 -20098251 + L1ME1 LINE L1 4695 4913 -1233 543 207 114 11 chrX 156876032 156876216 -20097924 + L1ME1 LINE L1 5143 5337 -809 365 268 31 72 chrX 156876210 156876404 -20097736 + L1MC4 LINE L1 7826 8011 -31 * 24 0 0 0 chrX 156876433 156876457 -20097683 + AT_rich Low_complexity Low_complexity 1 24 0 1218 186 146 99 chrX 156876457 156876902 -20097238 - L1MC4 LINE L1 -146 7896 7431 457 242 68 0 chrX 156876897 156877029 -20097111 + L1ME1 LINE L1 5698 5838 -332 * 202 213 0 0 chrX 156877091 156877138 -20097002 + L2 LINE L2 2065 2111 -1203 237 33 0 0 chrX 156877238 156877268 -20096872 + (GGA)n Simple_repeat Simple_repeat 1 30 0 589 273 69 17 chrX 156877303 156877534 -20096606 + HERV16 LTR ERVL 3400 3642 -1354 1899 153 0 3 chrX 156877596 156877915 -20096225 + AluJo SINE Alu 1 318 0 1948 122 0 0 chrX 156878260 156878515 -20095625 + AluJb SINE Alu 1 255 -57 346 303 97 13 chrX 156879763 156879918 -20094222 - MIR SINE MIR -31 231 64 1232 221 32 14 chrX 156880301 156880582 -20093558 + L1ME1 LINE L1 5877 6162 -4 206 228 53 18 chrX 156880964 156881021 -20093119 + MIR3 SINE MIR 116 174 -34 244 250 260 0 chrX 156881033 156881137 -20093003 - L2 LINE L2 0 3272 3142 380 193 0 83 chrX 156881158 156881267 -20092873 + MLT1G3 LTR MaLR 142 241 -289 227 286 126 8 chrX 156881312 156881431 -20092709 + MLT1G3 LTR MaLR 402 534 -8 2457 87 0 3 chrX 156883313 156883625 -20090515 - AluSx SINE Alu -1 311 1 1182 138 0 0 chrX 156884094 156884261 -20089879 + FRAM SINE Alu 1 166 -10 4050 202 56 17 chrX 156884532 156885908 -20088232 + L1MD2 LINE L1 4653 6096 -263 2266 91 3 0 chrX 156885913 156886227 -20087913 - AluSp SINE Alu 0 315 1 720 276 118 31 chrX 156888571 156889027 -20085113 - L1M4 LINE L1 -1164 4982 4487 4671 156 34 29 chrX 156889045 156889535 -20084605 - L1MA9 LINE L1 -22 6290 5804 2372 102 83 71 chrX 156889535 156889582 -20084558 - MSTA LTR MaLR 0 428 383 2202 102 7 0 chrX 156889582 156889875 -20084265 + AluSg SINE Alu 1 295 -15 2372 102 83 71 chrX 156889875 156890250 -20083890 - MSTA LTR MaLR -45 383 1 4671 156 34 29 chrX 156890250 156891221 -20082919 - L1MA9 LINE L1 -508 5804 4738 * 8091 190 46 61 chrX 156891196 156891707 -20082433 - L1M4 LINE L1 -1244 4902 4385 766 136 39 13 chrX 156891707 156891861 -20082279 - L1MA7 LINE L1 0 6291 6134 8091 190 46 61 chrX 156891861 156892260 -20081880 - L1M4 LINE L1 -1761 4385 3982 1734 176 10 33 chrX 156892260 156892567 -20081573 - AluJo SINE Alu -12 300 1 8091 190 46 61 chrX 156892567 156892768 -20081372 - L1M4 LINE L1 -2164 3982 3780 2303 105 0 0 chrX 156892768 156893064 -20081076 - AluSx SINE Alu -16 296 1 8091 190 46 61 chrX 156893064 156893845 -20080295 - L1M4 LINE L1 -2366 3780 3781 708 129 17 0 chrX 156893845 156893961 -20080179 - L1PA14 LINE L1 -2 6159 6042 8091 190 46 61 chrX 156893961 156894661 -20079479 - L1M4 LINE L1 -2364 3782 3073 6124 94 40 13 chrX 156894667 156895521 -20078619 - L1MA2 LINE L1 0 7723 6847 5892 93 10 2 chrX 156895529 156896339 -20077801 - L1PA13 LINE L1 0 6163 5348 4833 173 5 17 chrX 156896340 156897601 -20076539 - L1MA2 LINE L1 -749 6816 5643 606 183 70 0 chrX 156897599 156897714 -20076426 - L1MA2 LINE L1 -6195 1370 1248 * 750 274 132 0 chrX 156897932 156898151 -20075989 - MIR SINE MIR 0 262 15 245 125 73 59 chrX 156898153 156898221 -20075919 - L1MC4 LINE L1 -1337 6985 2007 338 338 187 4 chrX 156898407 156898632 -20075508 + L2 LINE L2 1946 2211 -1103 383 248 66 44 chrX 156898737 156898874 -20075266 + L2 LINE L2 1221 1360 -1954 648 181 0 45 chrX 156901045 156901178 -20072962 + MER3 DNA MER1_type 83 209 0 338 263 38 0 chrX 156901322 156901402 -20072738 - L2 LINE L2 -40 3273 3191 265 326 22 22 chrX 156901668 156901760 -20072380 + L2 LINE L2 3201 3292 -21 216 0 0 0 chrX 156902875 156902899 -20071241 + (T)n Simple_repeat Simple_repeat 1 24 0 224 246 77 0 chrX 156904358 156904423 -20069717 + L3b LINE CR1 1271 1340 -243 2478 55 0 23 chrX 156904505 156904814 -20069326 + AluY SINE Alu 1 302 -9 1128 224 100 7 chrX 156905446 156905911 -20068229 - L1MC3 LINE L1 -227 6132 5678 4430 171 45 13 chrX 156905936 156906388 -20067752 - L1MB4 LINE L1 -213 5967 5531 2378 99 0 0 chrX 156906388 156906692 -20067448 - AluSx SINE Alu -8 304 1 4430 171 45 13 chrX 156906692 156907755 -20066385 - L1MB4 LINE L1 -649 5531 4398 16504 30 0 0 chrX 156907766 156910372 -20063768 - L1PA3 LINE L1 0 6155 3550 1751 201 52 42 chrX 156910367 156910618 -20063522 - L1MC3 LINE L1 -745 5401 5233 2395 103 0 0 chrX 156910618 156910930 -20063210 + AluSx SINE Alu 1 312 0 1751 201 52 42 chrX 156910930 156911253 -20062887 - L1MC3 LINE L1 -913 5233 4915 2132 118 0 0 chrX 156911362 156911651 -20062489 - AluSx SINE Alu -23 289 1 623 191 61 14 chrX 156911780 156911927 -20062213 - MER103 DNA DNA -5 161 8 480 212 110 34 chrX 156912003 156912149 -20061991 + L1ME4a LINE L1 5959 6115 -6 2724 32 3 0 chrX 156912663 156912973 -20061167 + AluY SINE Alu 1 311 0 382 284 60 0 chrX 156913225 156913359 -20060781 - L1MC/D LINE L1 -2006 5802 5661 201 184 26 0 chrX 156913563 156913601 -20060539 - L2 LINE L2 -10 3303 3265 2351 80 0 13 chrX 156913695 156913996 -20060144 + AluSg SINE Alu 1 297 -13 6210 21 0 4 chrX 156913996 156914674 -20059466 + L1PA4 LINE L1 5481 6155 0 804 168 8 0 chrX 156915024 156915143 -20058997 - FLAM_C SINE Alu -22 121 2 191 290 0 16 chrX 156915764 156915826 -20058314 - MER5A DNA MER1_type -128 61 1 1461 243 120 15 chrX 156915891 156916298 -20057842 - MLT1J2 LTR MaLR 0 450 1 734 290 78 0 chrX 156916363 156916594 -20057546 + LTR16A LTR ERVL 1 249 -201 247 328 135 53 chrX 156918924 156919168 -20054972 + L2 LINE L2 3005 3268 -4 251 318 59 0 chrX 156919722 156919807 -20054333 + L2 LINE L2 2360 2449 -865 509 112 99 0 chrX 156919807 156919928 -20054212 - L1MB2 LINE L1 -79 6092 5921 1417 235 279 13 chrX 156920035 156920706 -20053434 + L2 LINE L2 2465 3310 -3 375 290 38 13 chrX 156920773 156920969 -20053171 + MLT1L LTR MaLR 59 367 -248 291 250 140 37 chrX 156920968 156921104 -20053036 + MLT1J LTR MaLR 362 511 0 * 306 319 69 46 chrX 156921617 156921921 -20052219 + L1M4 LINE L1 4992 5302 -844 1915 121 0 0 chrX 156921930 156922195 -20051945 + AluJo SINE Alu 1 265 -47 992 80 0 0 chrX 156922195 156922320 -20051820 + L1PA8 LINE L1 6042 6166 -6 248 184 20 0 chrX 156922329 156922378 -20051762 + Alu SINE Alu 87 136 -166 1264 174 83 16 chrX 156922488 156922730 -20051410 + LTR42 LTR ERVL 1 258 -237 806 310 43 31 chrX 156922727 156923079 -20051061 - MLT2F LTR ERVL -173 490 135 * 792 212 165 7 chrX 156923082 156923319 -20050821 - MLT1F1 LTR MaLR -2 565 289 837 209 20 0 chrX 156923319 156923472 -20050668 + MER45B DNA AcHobo 1 156 -884 406 175 0 0 chrX 156923526 156923589 -20050551 - MER45B DNA AcHobo -731 309 247 976 115 16 88 chrX 156923659 156923789 -20050351 - L1MB1 LINE L1 -7 6161 6046 2142 113 0 23 chrX 156923789 156924089 -20050051 - AluSx SINE Alu -18 294 2 976 115 16 88 chrX 156924089 156924140 -20050000 - L1MB1 LINE L1 -122 6046 5993 613 226 113 27 chrX 156924352 156924573 -20049567 - LTR37B LTR ERV1 -25 443 204 412 104 26 174 chrX 156927446 156927561 -20046579 - MER5B DNA MER1_type -4 174 77 321 319 43 63 chrX 156927576 156927834 -20046306 + L2 LINE L2 2783 3035 -237 747 173 0 0 chrX 156927841 156927951 -20046189 + FLAM_A SINE Alu 6 115 -27 2367 41 0 0 chrX 156927953 156928222 -20045918 - AluY SINE Alu -13 298 30 309 263 114 44 chrX 156928349 156928463 -20045677 + L2 LINE L2 3121 3242 -30 783 261 49 32 chrX 156928603 156928887 -20045253 - L1MC4 LINE L1 -605 7437 7149 * 1326 235 67 31 chrX 156928873 156929243 -20044897 - L1MC4 LINE L1 -864 7029 6552 494 178 0 30 chrX 156929255 156929356 -20044784 - MLT1C LTR MaLR -1 466 369 367 343 8 22 chrX 156929353 156929487 -20044653 - MLT1I LTR MaLR -187 222 91 * 242 157 0 0 chrX 156929801 156929852 -20044288 - AluSc SINE Alu 0 299 249 486 310 52 0 chrX 156930077 156930306 -20043834 - L1MEc LINE L1 -1785 4430 4190 1840 246 161 34 chrX 156930313 156931384 -20042756 - L1MEc LINE L1 -2265 3950 2743 44112 48 4 1 chrX 156931386 156937523 -20036617 - L1PA5 LINE L1 0 6154 3 1690 74 5 19 chrX 156937649 156937865 -20036275 - AluY SINE Alu -98 213 1 536 273 40 38 chrX 156937865 156938051 -20036089 - L1MEc LINE L1 -3744 2471 2322 786 155 47 16 chrX 156938051 156938180 -20035960 - FLAM_A SINE Alu 0 133 1 536 273 40 38 chrX 156938180 156938391 -20035749 - L1MEc LINE L1 -3893 2322 2113 579 138 4 28 chrX 156938555 156938673 -20035467 - MLT1B LTR MaLR -15 611 266 333 0 0 0 chrX 156938673 156938710 -20035430 + (TG)n Simple_repeat Simple_repeat 2 38 0 2128 134 3 0 chrX 156938711 156939017 -20035123 - AluSx SINE Alu -5 307 1 533 194 0 0 chrX 156939057 156939155 -20034985 - AluJ/FRAM SINE Alu 0 312 215 606 162 0 0 chrX 156939193 156939304 -20034836 - MLT1B LTR MaLR -115 275 165 4810 172 25 30 chrX 156939485 156940670 -20033470 - L1MB5 LINE L1 -17 6157 4984 1909 144 3 10 chrX 156940670 156940961 -20033179 - AluJb SINE Alu -23 289 1 4810 172 25 30 chrX 156940961 156941306 -20032834 - L1MB5 LINE L1 -1190 4984 4639 8051 175 27 1 chrX 156941413 156942733 -20031407 + ERVL-D LTR ERVL 901 2254 -3510 6939 141 38 13 chrX 156942737 156943487 -20030653 + ERVL-D LTR ERVL 3299 4086 -1678 2382 86 0 0 chrX 156943487 156943778 -20030362 + AluSx SINE Alu 1 291 -21 6939 141 38 13 chrX 156943778 156944100 -20030040 + ERVL-D LTR ERVL 4086 4398 -1366 2065 111 0 0 chrX 156944100 156944380 -20029760 + ERVL-D LTR ERVL 5066 5345 -419 532 112 112 31 chrX 156944386 156944484 -20029656 + ERVL-D LTR ERVL 5652 5757 -7 1295 180 42 25 chrX 156944484 156944767 -20029373 + MLT2D LTR ERVL 1 288 -126 273 136 0 0 chrX 156944825 156944869 -20029271 + MLT2D LTR ERVL 421 464 0 496 141 21 102 chrX 156944869 156944930 -20029210 - L1MB4 LINE L1 -241 5925 5878 2489 80 0 0 chrX 156944930 156945232 -20028908 - AluY SINE Alu -9 302 1 496 141 21 102 chrX 156945232 156945296 -20028844 - L1MB4 LINE L1 -288 5878 5810 294 304 93 59 chrX 156945389 156945626 -20028514 - L2 LINE L2 -221 3051 2807 195 42 0 0 chrX 156946021 156946045 -20028095 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 2065 118 10 0 chrX 156946338 156946627 -20027513 - AluSx SINE Alu -20 292 1 266 89 44 0 chrX 156946627 156946672 -20027468 + CT-rich Low_complexity Low_complexity 1 47 0 681 200 0 22 chrX 156946672 156946807 -20027333 - AluSg SINE Alu 0 312 181 665 95 0 0 chrX 156946814 156946898 -20027242 - AluSg SINE Alu -225 85 2 197 347 107 8 chrX 156946906 156947027 -20027113 + L2 LINE L2 3125 3257 -15 2274 92 0 0 chrX 156947642 156947956 -20026184 - AluY SINE Alu 0 314 1 3413 156 39 0 chrX 156948028 156948566 -20025574 - L1PA16 LINE L1 -2 6164 5606 437 204 0 87 chrX 156948566 156948669 -20025471 - MER81 DNA DNA -20 94 1 229 250 18 0 chrX 156949154 156949210 -20024930 + MER5A DNA MER1_type 14 70 -119 1985 296 88 41 chrX 156949227 156950147 -20023993 + L1M3a LINE L1 11 973 -4982 1784 151 20 33 chrX 157000927 157001226 -19972914 - AluJo SINE Alu -17 295 1 343 235 99 12 chrX 157001535 157001616 -19972524 + L2 LINE L2 3208 3295 -18 219 295 100 105 chrX 157002307 157002497 -19971643 + L2 LINE L2 2599 2787 -527 472 246 86 105 chrX 157003284 157003700 -19970440 + L1ME4a LINE L1 4918 5334 -812 351 228 50 50 chrX 157003788 157003968 -19970172 + L1ME4a LINE L1 5705 5884 -237 25 0 0 0 chrX 157004114 157004139 -19970001 + AT_rich Low_complexity Low_complexity 1 25 0 249 293 0 13 chrX 157004378 157004453 -19969687 + L2 LINE L2 1934 2007 -1307 746 176 0 23 chrX 157004460 157004591 -19969549 + L2 LINE L2 3186 3313 0 217 314 0 0 chrX 157004609 157004660 -19969480 + L2 LINE L2 2110 2160 -1154 282 210 57 73 chrX 157004750 157004874 -19969266 - L1ME3 LINE L1 -80 6082 5961 1458 243 191 10 chrX 157004924 157005525 -19968615 - L1ME3 LINE L1 -203 5967 5258 1666 247 60 32 chrX 157005609 157006362 -19967778 - L1ME3 LINE L1 -892 5254 4481 1649 104 0 8 chrX 157007503 157007762 -19966378 - L1MA4 LINE L1 -6 6476 6220 1610 130 4 0 chrX 157007764 157008003 -19966137 + LTR5 LTR ERVK 1 240 -729 2854 48 20 0 chrX 157008006 157008361 -19965779 + L1PA5 LINE L1 5792 6153 -1 4007 144 21 46 chrX 157008361 157009104 -19965036 + LTR5 LTR ERVK 245 969 0 4529 146 10 4 chrX 157009104 157010473 -19963667 - L1MA4 LINE L1 -259 6223 4849 1800 132 25 34 chrX 157010473 157010798 -19963342 - THE1C LTR MaLR 0 375 54 372 0 0 41 chrX 157011092 157011141 -19962999 - THE1C LTR MaLR -326 49 3 10091 99 45 40 chrX 157011143 157012715 -19961425 - THE1C-int LTR MaLR 0 1580 1 2388 98 19 29 chrX 157012715 157013093 -19961047 - THE1C LTR MaLR 0 375 2 8672 166 33 57 chrX 157013094 157015200 -19958940 - L1MA4 LINE L1 -1475 4853 2799 4043 227 66 14 chrX 157015194 157016661 -19957479 - L1MA4 LINE L1 -4066 1262 14 * 216 0 0 0 chrX 157016680 157016704 -19957436 + (T)n Simple_repeat Simple_repeat 1 24 0 447 291 56 41 chrX 157017126 157017322 -19956818 - L1MEc LINE L1 -4583 1813 1615 1133 258 86 51 chrX 157018076 157018356 -19955784 - L1M1 LINE L1 -4025 3540 3271 1834 178 0 7 chrX 157018356 157018648 -19955492 - AluJb SINE Alu -22 290 1 1133 258 86 51 chrX 157018648 157019096 -19955044 - L1M1 LINE L1 -4294 3271 2786 7080 29 0 0 chrX 157019108 157019936 -19954204 + L1PA5 LINE L1 5327 6154 0 555 292 20 5 chrX 157019968 157020163 -19953977 + L2 LINE L2 2461 2658 -656 1409 286 72 26 chrX 157020270 157021009 -19953131 - L2 LINE L2 -4 3309 2546 986 95 101 0 chrX 157021298 157021446 -19952694 + THE1B LTR MaLR 19 181 -183 1008 103 0 0 chrX 157021449 157021575 -19952565 + AluSg SINE Alu 1 126 -184 801 19 0 0 chrX 157021575 157021683 -19952457 + THE1B-int LTR MaLR 1468 1575 -5 295 53 0 0 chrX 157021686 157021724 -19952416 + THE1B LTR MaLR 1 38 -337 1122 113 6 6 chrX 157021727 157021886 -19952254 + AluSc SINE Alu 142 300 -9 1164 97 10 46 chrX 157021886 157022081 -19952059 + THE1B LTR MaLR 177 364 0 4804 159 32 61 chrX 157022086 157023825 -19950315 + THE1B-int LTR MaLR 6 1580 0 5058 96 1 0 chrX 157022435 157023141 -19950999 - THE1-int LTR MaLR -505 1075 369 2332 107 48 22 chrX 157023825 157024180 -19949960 + THE1B LTR MaLR 1 364 0 2757 261 173 33 chrX 157024192 157024268 -19949872 - L2 LINE L2 -814 2500 2436 1922 166 0 0 chrX 157024268 157024570 -19949570 - AluSx SINE Alu -10 302 1 2757 261 173 33 chrX 157024570 157025603 -19948537 - L2 LINE L2 -878 2436 1236 828 280 131 33 chrX 157025629 157026026 -19948114 + L2 LINE L2 2876 3311 -2 218 298 150 61 chrX 157026028 157026407 -19947733 + L2 LINE L2 175 587 -2727 610 226 32 0 chrX 157029972 157030096 -19944044 + MIR SINE MIR 40 167 -95 622 153 0 18 chrX 157030325 157030436 -19943704 + HERVL74 LTR ERVL 1912 2020 -3665 865 267 94 0 chrX 157030469 157030757 -19943383 + HAL1 LINE L1 1586 1900 -607 299 232 85 0 chrX 157031822 157031904 -19942236 - MER58A DNA MER1_type -18 89 1 418 150 0 0 chrX 157032224 157032284 -19941856 - AluJ/FLAM SINE Alu -252 60 1 1983 151 10 0 chrX 157032776 157033081 -19941059 + AluJo SINE Alu 1 308 -4 1668 201 10 33 chrX 157033194 157033588 -19940552 + L1M4 LINE L1 4767 5151 -995 412 247 204 21 chrX 157033580 157033876 -19940264 + L1MCa LINE L1 1078 1318 -5206 * 369 0 0 0 chrX 157033876 157033917 -19940223 + (CA)n Simple_repeat Simple_repeat 2 42 0 412 247 204 21 chrX 157033917 157034233 -19939907 + L1MCa LINE L1 1318 1926 -4598 * 856 253 57 28 chrX 157034225 157034755 -19939385 + L1MCa LINE L1 2510 3054 -3372 817 209 32 153 chrX 157034937 157035499 -19938641 + L1MCa LINE L1 3007 3439 -2987 327 0 0 0 chrX 157035499 157035542 -19938598 - L1PA2 LINE L1 -2 6153 6111 817 209 32 153 chrX 157035542 157035800 -19938340 + L1MCa LINE L1 3439 3727 -2699 1746 239 94 46 chrX 157035800 157036175 -19937965 + L1M4 LINE L1 4385 4740 -1406 802 201 62 34 chrX 157036175 157036384 -19937756 - MER58C DNA MER1_type 0 215 1 1746 239 94 46 chrX 157036384 157036859 -19937281 + L1M4 LINE L1 4740 5276 -870 361 247 169 26 chrX 157036845 157037153 -19936987 + L1MEc LINE L1 1635 1986 -4410 * 42545 38 0 0 chrX 157037159 157043305 -19930835 + L1PA3 LINE L1 7 6154 -1 8797 145 27 16 chrX 157043299 157045067 -19929073 + L1M1 LINE L1 3842 5645 -935 * 2668 45 0 0 chrX 157045067 157045376 -19928764 + AluY SINE Alu 1 309 -2 8797 145 27 16 chrX 157045376 157045640 -19928500 + L1M1 LINE L1 5645 5904 -676 817 224 16 20 chrX 157046525 157046770 -19927370 + L1MC4 LINE L1 7797 8040 -2 200 254 127 18 chrX 157046845 157046900 -19927240 - L2 LINE L2 0 3272 3212 649 279 75 20 chrX 157047255 157047509 -19926631 + MER57B LTR ERV1 3 270 -164 390 181 12 0 chrX 157047547 157047630 -19926510 + LTR54 LTR ERV1 427 510 0 611 158 222 36 chrX 157047650 157047692 -19926448 - L1ME LINE L1 -481 5689 5656 1820 160 62 19 chrX 157047692 157047888 -19926252 - MLT1B LTR MaLR 0 390 204 2263 93 3 3 chrX 157047888 157048188 -19925952 - AluSc SINE Alu -9 300 1 1820 160 62 19 chrX 157048188 157048365 -19925775 - MLT1B LTR MaLR -186 204 1 611 158 222 36 chrX 157048365 157048543 -19925597 - L1ME LINE L1 -514 5656 5428 278 167 60 0 chrX 157048673 157048757 -19925383 - L1MA8 LINE L1 0 6291 6203 414 139 0 0 chrX 157048758 157048830 -19925310 - L1MA8 LINE L1 -194 6097 6026 * 1029 228 117 0 chrX 157048824 157049183 -19924957 - L1M1 LINE L1 -4630 2935 2535 232 407 0 0 chrX 157049184 157049334 -19924806 + L2 LINE L2 2432 2581 -733 569 278 48 9 chrX 157049567 157049794 -19924346 - L1ME3A LINE L1 -214 5956 5721 2474 57 3 0 chrX 157050667 157050965 -19923175 - AluY SINE Alu -12 299 1 235 246 16 0 chrX 157050965 157051026 -19923114 - L1MDa LINE L1 -6445 95 34 242 260 21 0 chrX 157051142 157051250 -19922890 - L1ME3A LINE L1 -688 5476 5366 267 264 0 0 chrX 157051260 157051294 -19922846 + (TA)n Simple_repeat Simple_repeat 1 34 -38 2143 144 37 11 chrX 157051294 157051670 -19922470 + MLT1B LTR MaLR 5 390 0 267 264 0 0 chrX 157051670 157051707 -19922433 + (TA)n Simple_repeat Simple_repeat 33 72 0 1769 119 92 41 chrX 157053289 157053584 -19920556 - AluJo SINE Alu -2 310 1 187 196 43 0 chrX 157053584 157053619 -19920521 - MIR SINE MIR -16 246 207 5964 139 20 31 chrX 157053619 157054702 -19919438 - MER11C LTR ERVK 0 1071 1 327 268 232 7 chrX 157054717 157054859 -19919281 - L2 LINE L2 -967 2347 2174 1749 108 21 0 chrX 157055794 157056035 -19918105 + AluSg/x SINE Alu 66 311 -1 2277 89 0 7 chrX 157056749 157057040 -19917100 - AluSx SINE Alu -22 290 2 328 306 0 28 chrX 157057085 157057193 -19916947 + HAL1 LINE L1 1650 1754 -753 1723 147 0 36 chrX 157057247 157057526 -19916614 + AluJb SINE Alu 29 297 -15 1461 101 29 0 chrX 157057647 157057885 -19916255 - L1MA5 LINE L1 -133 6167 5923 344 305 68 59 chrX 157058045 157058281 -19915859 + HAL1b LINE L1 728 965 -383 362 231 31 31 chrX 157058358 157058488 -19915652 + HAL1 LINE L1 2273 2402 -105 189 0 0 0 chrX 157058718 157058739 -19915401 + (GA)n Simple_repeat Simple_repeat 1 21 0 1132 179 10 0 chrX 157059447 157059654 -19914486 + MER2 DNA MER2_type 2 210 -135 2082 214 165 19 chrX 157059765 157060395 -19913745 + MER72 LTR ERV1 1 722 0 318 310 11 0 chrX 157060461 157060548 -19913592 + L2 LINE L2 313 400 -2914 577 347 57 20 chrX 157060580 157060717 -19913423 - L2 LINE L2 -2657 657 526 1821 137 32 14 chrX 157060717 157060995 -19913145 + AluJo SINE Alu 1 283 -29 386 19 0 19 chrX 157060995 157061047 -19913093 + (GA)n Simple_repeat Simple_repeat 2 52 0 577 347 57 20 chrX 157061047 157061153 -19912987 - L2 LINE L2 -2787 527 404 2659 29 12 0 chrX 157061177 157061458 -19912682 - L1P LINE L1 -1608 4538 4258 1699 60 34 19 chrX 157061458 157061725 -19912415 - L1PA4 LINE L1 -278 5877 4195 551 169 34 14 chrX 157061718 157061866 -19912274 - L1M4 LINE L1 -1016 5130 4980 * 259 224 0 0 chrX 157061912 157061970 -19912170 + L1MC/D LINE L1 5815 5872 -1936 1298 98 0 0 chrX 157061971 157062135 -19912005 - AluSg/x SINE Alu -17 295 132 231 36 0 0 chrX 157062207 157062235 -19911905 + (CA)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chrX 157062445 157062480 -19911660 + AT_rich Low_complexity Low_complexity 1 35 0 749 278 34 52 chrX 157062819 157063421 -19910719 + L1MC/D LINE L1 5013 5603 -758 335 231 104 30 chrX 157063423 157063557 -19910583 + MLT1L LTR MaLR 448 591 -24 226 306 0 0 chrX 157063583 157063645 -19910495 - MER58 DNA MER1_type 0 2420 2359 214 182 23 0 chrX 157063666 157063710 -19910430 + CT-rich Low_complexity Low_complexity 1 45 0 485 259 18 0 chrX 157063710 157063822 -19910318 - MER58 DNA MER1_type -100 115 2 1294 170 22 4 chrX 157064869 157065222 -19908918 - MSTA LTR MaLR -33 395 1 308 258 32 76 chrX 157065415 157065582 -19908558 + MIR SINE MIR 32 189 -65 1377 198 84 45 chrX 157066210 157066589 -19907551 + MSTD LTR MaLR 1 394 -2 509 303 81 108 chrX 157067834 157068264 -19905876 + L2 LINE L2 1877 2317 -997 833 233 0 6 chrX 157068264 157068436 -19905704 - MIR SINE MIR 0 262 92 509 303 81 108 chrX 157068436 157068830 -19905310 + L2 LINE L2 2317 2845 -469 261 343 0 0 chrX 157068851 157068921 -19905219 + L2 LINE L2 3007 3076 -196 576 222 210 16 chrX 157069247 157069504 -19904636 - HAL1 LINE L1 -848 1659 1353 14017 149 43 33 chrX 157069524 157070822 -19903318 - L1MA6 LINE L1 -2 7258 5975 2316 107 10 0 chrX 157070822 157071130 -19903010 - AluSx SINE Alu -1 311 1 14017 149 43 33 chrX 157071130 157071903 -19902237 - L1MA6 LINE L1 -1285 5975 5212 1886 147 23 7 chrX 157071903 157072083 -19902057 - AluSx SINE Alu -1 311 122 243 0 0 0 chrX 157072083 157072110 -19902030 + (TG)n Simple_repeat Simple_repeat 2 28 0 1886 147 23 7 chrX 157072110 157072235 -19901905 - AluSx SINE Alu -190 122 1 14017 149 43 33 chrX 157072235 157073846 -19900294 - L1MA6 LINE L1 -2048 5212 3619 329 64 0 0 chrX 157073846 157073893 -19900247 + MADE1 DNA Mariner 1 47 -33 14017 149 43 33 chrX 157073893 157074025 -19900115 - L1MA6 LINE L1 -3641 3619 3490 2074 104 14 0 chrX 157074025 157074312 -19899828 - AluSx SINE Alu -21 291 1 14017 149 43 33 chrX 157074312 157074529 -19899611 - L1MA6 LINE L1 -3770 3490 3136 2148 24 0 0 chrX 157074543 157074791 -19899349 - L1PA2 LINE L1 -2 6153 5906 797 10 10 0 chrX 157074793 157074892 -19899248 + L1PA2 LINE L1 5744 5843 -312 779 74 41 8 chrX 157075034 157075155 -19898985 + L1PA2 LINE L1 5815 5939 -216 * 11796 199 61 34 chrX 157075124 157076621 -19897519 - L1MA6 LINE L1 -3956 3150 1844 1768 74 35 0 chrX 157076621 157076878 -19897262 - L1MA1 LINE L1 0 6302 6037 11796 199 61 34 chrX 157076878 157078507 -19895633 - L1MA6 LINE L1 -5262 1844 259 1256 259 22 5 chrX 157078510 157078923 -19895217 - L1M1 LINE L1 -5139 1189 770 1414 162 37 57 chrX 157078963 157079260 -19894880 + AluJo SINE Alu 1 291 -21 425 186 29 20 chrX 157079559 157079661 -19894479 - L1MA6 LINE L1 -6921 109 7 388 140 187 47 chrX 157079799 157079906 -19894234 - MER21B LTR ERV1 -413 450 329 2311 124 186 104 chrX 157079997 157080190 -19893950 + Tigger2 DNA MER2_type 1 177 -2541 2207 108 0 0 chrX 157080190 157080476 -19893664 + AluSg SINE Alu 1 286 -24 2311 124 186 104 chrX 157080476 157080487 -19893653 + Tigger2 DNA MER2_type 177 186 -2532 2108 54 8 4 chrX 157080487 157080746 -19893394 + AluY SINE Alu 36 295 -16 2311 124 186 104 chrX 157080746 157081154 -19892986 + Tigger2 DNA MER2_type 186 664 -2054 1216 143 67 0 chrX 157081157 157081367 -19892773 + Tigger2 DNA MER2_type 2494 2717 -1 357 309 81 0 chrX 157081382 157081518 -19892622 - HAL1 LINE L1 -1352 1155 1009 338 139 42 0 chrX 157081529 157081601 -19892539 - L1MB4 LINE L1 -1 6179 6105 563 183 125 5 chrX 157081601 157081791 -19892349 + L1MA4 LINE L1 5785 6031 -274 580 122 244 0 chrX 157081793 157081908 -19892232 + Tigger2 DNA MER2_type 310 452 -2266 3355 178 30 5 chrX 157081913 157082536 -19891604 - L1M1 LINE L1 -4685 643 5 421 358 16 4 chrX 157082536 157082790 -19891350 - HAL1 LINE L1 -1479 1028 772 2228 129 0 0 chrX 157083438 157083747 -19890393 + AluSx SINE Alu 1 309 -3 332 171 219 19 chrX 157083975 157084080 -19890060 - L2 LINE L2 -1 3312 3187 334 352 21 52 chrX 157084287 157084480 -19889660 - L2 LINE L2 -191 3081 2895 1929 140 3 3 chrX 157084573 157084866 -19889274 - AluJb SINE Alu -10 302 10 647 241 96 0 chrX 157085070 157085236 -19888904 - MIR SINE MIR -7 255 74 200 273 0 0 chrX 157085256 157085311 -19888829 - L2 LINE L2 -779 2535 2481 476 182 152 0 chrX 157085748 157085880 -19888260 - MER5C DNA MER1_type 0 324 173 21 0 0 0 chrX 157086155 157086176 -19887964 + AT_rich Low_complexity Low_complexity 1 21 0 1724 197 156 32 chrX 157086293 157086882 -19887258 + LTR65 LTR ERV1 1 662 -7 319 238 13 60 chrX 157087527 157087678 -19886462 - L1ME1 LINE L1 -18 6542 6399 598 171 153 30 chrX 157087731 157087930 -19886210 - L1ME1 LINE L1 -653 5983 5758 512 204 0 0 chrX 157087928 157088031 -19886109 + L1M4 LINE L1 5161 5263 -883 * 706 165 79 0 chrX 157088031 157088158 -19885982 + Tigger4(Zombi) DNA MER2_type 2593 2729 -2 441 224 0 16 chrX 157088162 157088277 -19885863 - L1ME1 LINE L1 -1201 5339 5230 1138 231 60 33 chrX 157088278 157088871 -19885269 - L1ME1 LINE L1 -3894 2646 2121 387 217 251 39 chrX 157090153 157090360 -19883780 + MLT1F LTR MaLR 24 274 -281 531 180 79 35 chrX 157090396 157090588 -19883552 + MLT1F LTR MaLR 349 595 0 1965 97 56 0 chrX 157091546 157091836 -19882304 - AluSg SINE Alu 0 305 1 311 327 80 0 chrX 157092212 157092325 -19881815 - L2 LINE L2 -4 3268 3147 234 332 72 15 chrX 157092651 157093154 -19880986 - L1MC5 LINE L1 -312 7730 7220 308 247 0 0 chrX 157093156 157093245 -19880895 - L1MC5 LINE L1 -177 7784 7696 310 277 36 18 chrX 157093358 157093470 -19880670 + L1MC4 LINE L1 7920 8033 -9 582 246 95 64 chrX 157093494 157093758 -19880382 - L2 LINE L2 -1925 1389 1118 1395 143 92 0 chrX 157093900 157094194 -19879946 - MER33 DNA MER1_type -3 321 1 425 149 0 14 chrX 157094780 157094854 -19879286 - MLT1K LTR MaLR -340 248 176 301 333 43 26 chrX 157095030 157095147 -19878993 - L2 LINE L2 -22 3291 3173 1092 288 137 18 chrX 157095578 157096127 -19878013 - L2 LINE L2 0 3313 2707 382 274 183 13 chrX 157096133 157096286 -19877854 - L2 LINE L2 -819 2495 2317 186 207 24 49 chrX 157097058 157097140 -19877000 + L2 LINE L2 2464 2543 -771 193 239 185 22 chrX 157097484 157097576 -19876564 - L2 LINE L2 -927 2387 2281 2038 145 95 26 chrX 157099556 157099597 -19874543 - L1MB3 LINE L1 -6 6177 6140 1763 123 98 0 chrX 157099597 157099874 -19874266 - AluJb SINE Alu -8 304 1 2038 145 95 26 chrX 157099874 157099916 -19874224 - L1MB3 LINE L1 -43 6140 6102 1683 179 10 3 chrX 157099916 157100207 -19873933 + AluJo SINE Alu 1 293 -19 2038 145 95 26 chrX 157100207 157100576 -19873564 - L1MB3 LINE L1 -81 6102 5693 1929 138 39 3 chrX 157100577 157100889 -19873251 + MLT2B1 LTR ERVL 1 323 -197 288 0 0 0 chrX 157100897 157100929 -19873211 + (CA)n Simple_repeat Simple_repeat 2 33 0 1509 130 105 11 chrX 157100959 157101244 -19872896 - L1MB3 LINE L1 -475 5696 5385 4650 124 109 65 chrX 157101257 157101959 -19872181 + L1MCa LINE L1 747 1518 -4908 2518 62 0 10 chrX 157101959 157102267 -19871873 + AluY SINE Alu 1 305 -6 4650 124 109 65 chrX 157102267 157102684 -19871456 + L1MCa LINE L1 1518 1915 -4511 582 340 63 4 chrX 157102712 157102965 -19871175 + ERVL LTR ERVL 4069 4336 -1428 1026 352 29 9 chrX 157103065 157103648 -19870492 + ERVL LTR ERVL 4591 5185 -579 755 295 112 11 chrX 157103942 157104298 -19869842 + LTR16A LTR ERVL 12 403 -47 540 307 7 0 chrX 157105609 157105759 -19868381 + ERVL LTR ERVL 4152 4302 -1462 1695 130 4 21 chrX 157105766 157106141 -19867999 + Charlie3 DNA MER1_type 9 2712 0 704 258 116 11 chrX 157107093 157107361 -19866779 + LTR16A LTR ERVL 155 450 0 843 0 0 0 chrX 157107365 157107455 -19866685 - AluYb8 SINE Alu -11 307 218 2120 99 7 0 chrX 157107738 157108021 -19866119 + AluSx SINE Alu 1 313 0 253 0 0 0 chrX 157108021 157108049 -19866091 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 3283 160 10 4 chrX 157109141 157110046 -19864094 + L1MB7 LINE L1 4947 5854 -324 1747 172 12 9 chrX 157110118 157110455 -19863685 + L1MB7 LINE L1 5836 6173 -11 5488 217 77 43 chrX 157110535 157110595 -19863545 + L1ME2 LINE L1 3332 3388 -2776 1652 203 14 3 chrX 157110595 157110890 -19863250 - AluJo SINE Alu -14 298 1 5488 217 77 43 chrX 157110890 157111147 -19862993 + L1ME2 LINE L1 3388 3635 -2529 2690 39 0 0 chrX 157111147 157111455 -19862685 + AluY SINE Alu 1 308 -3 5488 217 77 43 chrX 157111455 157111468 -19862672 + L1ME2 LINE L1 3635 3646 -2518 2610 98 3 16 chrX 157111468 157111836 -19862304 + THE1B LTR MaLR 1 363 -1 5488 217 77 43 chrX 157111836 157111954 -19862186 + L1ME2 LINE L1 3646 3758 -2406 1761 158 43 54 chrX 157111954 157112346 -19861794 - MLT1B LTR MaLR -1 389 2 5488 217 77 43 chrX 157112346 157113819 -19860321 + L1ME2 LINE L1 3758 5179 -985 1766 138 23 26 chrX 157113819 157114113 -19860027 + L1PA16 LINE L1 5855 6157 -9 5488 217 77 43 chrX 157114113 157114241 -19859899 + L1ME2 LINE L1 5179 5301 -863 1959 146 21 0 chrX 157114241 157114529 -19859611 + AluSx SINE Alu 3 296 -16 5488 217 77 43 chrX 157114529 157115176 -19858964 + L1ME2 LINE L1 5301 6151 -13 980 241 90 41 chrX 157115233 157115711 -19858429 + MLT1E2 LTR MaLR 131 622 -4 599 87 0 0 chrX 157115867 157115959 -19858181 + L1MA9 LINE L1 6216 6307 -5 309 275 0 44 chrX 157115988 157116079 -19858061 - MER5B DNA MER1_type -91 87 1 1989 137 30 10 chrX 157116152 157116451 -19857689 - AluSx SINE Alu -7 305 1 275 306 83 44 chrX 157116773 157117229 -19856911 + L1P LINE L1 3176 3649 -2497 239 311 26 22 chrX 157117481 157117709 -19856431 + L1MC4a LINE L1 3996 4224 -1922 1728 180 0 7 chrX 157117795 157118089 -19856051 + AluJb SINE Alu 1 292 -20 21 36 0 0 chrX 157118217 157118245 -19855895 + AT_rich Low_complexity Low_complexity 1 28 0 821 297 103 51 chrX 157118245 157118931 -19855209 + L1MC4a LINE L1 4567 5288 -858 292 353 28 8 chrX 157118957 157119206 -19854934 + L1MC4a LINE L1 5318 5571 -595 320 317 229 3 chrX 157119303 157119596 -19854544 + L1MC4a LINE L1 5713 6071 -1737 811 279 50 46 chrX 157119683 157120138 -19854002 + L1M4 LINE L1 3003 3459 -2687 806 298 33 26 chrX 157121453 157121925 -19852215 + L2 LINE L2 2699 3177 -136 851 174 221 0 chrX 157122267 157122457 -19851683 - MIR SINE MIR -28 234 3 210 351 54 0 chrX 157122483 157122557 -19851583 - L2 LINE L2 -91 3181 3104 405 279 180 0 chrX 157122561 157122683 -19851457 - MIR SINE MIR -41 221 78 797 296 128 28 chrX 157122698 157123288 -19850852 - L2 LINE L2 -43 3270 2382 2307 73 0 3 chrX 157123633 157123952 -19850188 + AluY SINE Alu 1 318 0 2492 47 0 0 chrX 157124134 157124433 -19849707 - AluY SINE Alu -12 299 1 293 207 69 52 chrX 157124468 157124584 -19849556 + MER97c DNA MER1_type? 449 566 -524 207 313 0 0 chrX 157124998 157125062 -19849078 + GA-rich Low_complexity Low_complexity 2 65 0 32 0 0 0 chrX 157125363 157125395 -19848745 + GC_rich Low_complexity Low_complexity 1 32 0 1161 221 60 20 chrX 157125915 157126268 -19847872 - MER63B DNA MER1_type -68 368 2 324 210 0 0 chrX 157126606 157126668 -19847472 - AluJ/FRAM SINE Alu -25 277 216 566 272 71 16 chrX 157126848 157127102 -19847038 - L1M4 LINE L1 -1153 4993 4726 643 244 150 8 chrX 157127193 157127439 -19846701 + MLT1G1 LTR MaLR 1 281 -314 599 207 104 12 chrX 157127495 157127659 -19846481 + MLT1G1 LTR MaLR 412 590 0 1500 196 140 60 chrX 157127665 157127731 -19846409 - L1M4 LINE L1 -1475 4671 4612 2515 74 6 3 chrX 157127731 157128042 -19846098 + AluSp SINE Alu 2 313 0 1500 196 140 60 chrX 157128042 157128507 -19845633 - L1M4 LINE L1 -1534 4612 4076 1737 162 3 39 chrX 157128507 157128815 -19845325 + AluJo SINE Alu 2 298 -14 1500 196 140 60 chrX 157128815 157128934 -19845206 - L1M4 LINE L1 -2070 4076 3968 2395 93 0 3 chrX 157128934 157129245 -19844895 - AluSq SINE Alu -3 310 1 235 179 0 0 chrX 157129475 157129514 -19844626 - L1ME LINE L1 -4984 1086 1048 2127 123 7 3 chrX 157129577 157129886 -19844254 - AluSx SINE Alu -2 310 1 396 204 72 96 chrX 157130198 157130235 -19843905 + MIR SINE MIR 90 126 -136 2368 84 0 0 chrX 157130235 157130533 -19843607 - AluSq SINE Alu -13 300 3 2177 104 37 3 chrX 157130537 157130836 -19843304 - AluSp SINE Alu -4 309 1 396 204 72 96 chrX 157130836 157130960 -19843180 + MIR SINE MIR 129 252 -10 2230 111 0 0 chrX 157131109 157131406 -19842734 - AluSx SINE Alu -15 297 1 652 222 94 22 chrX 157131976 157132156 -19841984 - MIR SINE MIR -11 251 59 951 246 91 71 chrX 157132509 157133553 -19840587 - L1ME3A LINE L1 -224 5946 4882 552 239 7 0 chrX 157133656 157133682 -19840458 - L1MA10 LINE L1 -27 6307 6282 739 265 27 16 chrX 157133682 157133939 -19840201 - L1ME1 LINE L1 -44 6191 5932 733 101 83 0 chrX 157133945 157134054 -19840086 - AluSg/x SINE Alu -18 294 177 2666 197 86 26 chrX 157134056 157135538 -19838602 - L1ME1 LINE L1 -298 5937 4351 530 189 31 88 chrX 157135560 157135719 -19838421 - MER77 LTR ERV1 -4 601 452 2173 134 0 0 chrX 157135742 157136040 -19838100 - AluSx SINE Alu -14 298 1 419 214 0 26 chrX 157136042 157136159 -19837981 - L1ME1 LINE L1 -4028 2368 2255 2008 136 0 13 chrX 157136201 157136502 -19837638 + AluJb SINE Alu 1 297 -15 5560 119 35 22 chrX 157136512 157138375 -19835765 - L1MA8 LINE L1 -22 6269 4372 2983 171 21 13 chrX 157138437 157139301 -19834839 - L1MB5 LINE L1 -10 6164 5117 1524 246 59 27 chrX 157139385 157140043 -19834097 - L1ME1 LINE L1 -4275 2121 1443 2303 66 0 7 chrX 157140044 157140330 -19833810 + AluY SINE Alu 1 284 -27 1430 250 87 30 chrX 157140532 157140596 -19833544 - L1ME1 LINE L1 -4871 1275 1216 2300 116 3 0 chrX 157140596 157140906 -19833234 - AluSx SINE Alu -1 311 1 1430 250 87 30 chrX 157140906 157141089 -19833051 - L1ME1 LINE L1 -4930 1216 1045 642 129 83 0 chrX 157141089 157141221 -19832919 - L1MD2 LINE L1 -2 6357 6215 1430 250 87 30 chrX 157141221 157141368 -19832772 - L1ME1 LINE L1 -5101 1045 908 1713 168 20 24 chrX 157141368 157141660 -19832480 - AluJo SINE Alu -21 291 1 1430 250 87 30 chrX 157141660 157141997 -19832143 - L1ME1 LINE L1 -5238 908 674 488 239 168 0 chrX 157142321 157142476 -19831664 - L2 LINE L2 -435 2879 2699 473 191 14 12 chrX 157142477 157142620 -19831520 - MER58B DNA MER1_type 0 341 1 364 307 40 0 chrX 157142636 157142737 -19831403 - L2 LINE L2 -628 2686 2582 634 246 95 0 chrX 157142745 157142924 -19831216 - L2 LINE L2 -1135 2179 1984 4330 168 42 28 chrX 157142925 157143897 -19830243 + L1MA9 LINE L1 5289 6274 -38 970 217 92 15 chrX 157143913 157144185 -19829955 - L2 LINE L2 -1317 1997 1705 308 198 43 103 chrX 157144206 157144322 -19829818 - L2 LINE L2 -56 3257 3149 * 394 343 106 23 chrX 157144315 157144711 -19829429 + L2 LINE L2 2282 2710 -604 332 239 231 23 chrX 157145587 157145717 -19828423 - MER5B DNA MER1_type 0 178 22 465 208 71 16 chrX 157145921 157146076 -19828064 - MLT1F LTR MaLR -13 529 383 671 271 143 25 chrX 157146749 157147454 -19826686 - L1M4 LINE L1 -1170 4976 4189 326 193 36 0 chrX 157147598 157147681 -19826459 + LTR41 LTR ERVL 109 194 -579 2629 220 51 38 chrX 157147770 157148731 -19825409 - L1M4 LINE L1 -1259 4887 3914 551 207 48 0 chrX 157148937 157149111 -19825029 - L1ME2 LINE L1 -284 5882 5697 697 221 27 7 chrX 157150591 157150740 -19823400 - MER58A DNA MER1_type 0 152 1 1571 173 40 0 chrX 157151309 157151586 -19822554 - AluJo SINE Alu -24 288 1 241 288 41 0 chrX 157151818 157151891 -19822249 - L2 LINE L2 -1416 1898 1823 237 108 0 0 chrX 157154041 157154078 -19820062 + (CA)n Simple_repeat Simple_repeat 2 38 0 302 301 140 29 chrX 157154080 157154216 -19819924 + L2 LINE L2 3100 3250 -22 738 205 176 21 chrX 157154577 157154953 -19819187 - L1MC5 LINE L1 -54 7907 7474 968 245 71 35 chrX 157155095 157155463 -19818677 + HERVL40 LTR ERVL 4981 5361 -169 939 286 45 6 chrX 157155465 157155797 -19818343 - HERVL40 LTR ERVL -2356 3174 2830 827 232 17 11 chrX 157157367 157157544 -19816596 - MER5B DNA MER1_type 0 178 1 356 259 74 0 chrX 157157735 157157843 -19816297 + L1MC4 LINE L1 7275 7390 -652 2094 143 162 5 chrX 157158149 157158519 -19815621 + MSTA LTR MaLR 1 428 0 335 253 24 0 chrX 157158887 157158970 -19815170 - MER103 DNA DNA -79 87 3 2292 82 17 0 chrX 157159594 157159885 -19814255 + AluSg SINE Alu 13 308 -2 652 245 115 0 chrX 157160805 157160997 -19813143 + MER58C DNA MER1_type 1 214 -1 691 223 85 71 chrX 157161133 157161357 -19812783 + MIR SINE MIR 2 228 -34 463 289 88 16 chrX 157162739 157162933 -19811207 + MIR SINE MIR 55 262 0 204 205 0 0 chrX 157165096 157165135 -19809005 - MIR3 SINE MIR -11 197 159 260 336 27 20 chrX 157165713 157165862 -19808278 + L2 LINE L2 2376 2525 -789 192 329 93 14 chrX 157165888 157166028 -19808112 + L2 LINE L2 2897 3047 -225 538 156 273 0 chrX 157167070 157167198 -19806942 - MER103 DNA DNA -2 164 2 525 193 123 0 chrX 157167732 157167846 -19806294 + MIR SINE MIR 20 147 -115 668 204 11 68 chrX 157167894 157168070 -19806070 - MIR SINE MIR -56 206 41 186 43 0 0 chrX 157169338 157169361 -19804779 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 328 289 159 41 chrX 157169484 157169848 -19804292 + L1M2 LINE L1 676 1082 -5767 1923 118 14 0 chrX 157170998 157171277 -19802863 - AluSx SINE Alu -29 283 1 388 206 93 0 chrX 157172327 157172424 -19801716 - MER5C DNA MER1_type -1 323 218 371 363 99 0 chrX 157172558 157172820 -19801320 + L2 LINE L2 1579 1866 -1448 275 217 105 46 chrX 157173154 157173331 -19800809 - L1MEc LINE L1 -3821 2394 2229 845 200 70 30 chrX 157173384 157173614 -19800526 - Charlie5 DNA MER1_type -10 2602 2364 1755 153 56 63 chrX 157174564 157174602 -19799538 - THE1C LTR MaLR 0 375 338 1817 122 87 3 chrX 157174602 157174890 -19799250 + AluSx SINE Alu 1 312 0 1755 153 56 63 chrX 157174890 157175229 -19798911 - THE1C LTR MaLR -37 338 1 276 339 55 12 chrX 157176032 157176197 -19797943 - L3 LINE CR1 -340 1237 1066 581 188 27 27 chrX 157176332 157176481 -19797659 - L1MEc LINE L1 -5915 481 333 364 292 71 32 chrX 157176484 157176638 -19797502 - MIR SINE MIR -6 256 97 27 0 0 0 chrX 157176708 157176735 -19797405 + AT_rich Low_complexity Low_complexity 1 27 0 496 244 249 10 chrX 157177672 157177877 -19796263 - MIR SINE MIR -6 256 3 189 316 32 53 chrX 157177882 157177977 -19796163 + L3 LINE CR1 910 1002 -575 222 256 18 167 chrX 157178004 157178172 -19795968 + MER5B DNA MER1_type 4 146 -32 1132 177 20 75 chrX 157178206 157178500 -19795640 - L1MC4 LINE L1 -68 7974 7697 300 254 85 77 chrX 157179127 157179257 -19794883 + MIR SINE MIR 6 136 -126 2076 133 0 7 chrX 157179521 157179823 -19794317 + AluSx SINE Alu 1 300 -12 268 136 0 0 chrX 157179917 157179961 -19794179 + L1MA7 LINE L1 6245 6288 -3 2068 220 99 41 chrX 157180933 157181547 -19792593 - L1MC4 LINE L1 -1 8041 7392 264 305 86 75 chrX 157181773 157181947 -19792193 + L2 LINE L2 1330 1505 -1809 365 209 231 0 chrX 157182053 157182144 -19791996 - L2 LINE L2 -5 3308 3197 318 309 111 0 chrX 157182197 157182323 -19791817 + L2 LINE L2 1869 2008 -1306 242 365 21 0 chrX 157182365 157182461 -19791679 - MIR SINE MIR -136 126 29 2284 89 0 3 chrX 157182844 157183136 -19791004 - AluY SINE Alu -20 291 1 1272 210 36 32 chrX 157183162 157183443 -19790697 + AluJo SINE Alu 1 282 -30 207 114 0 0 chrX 157184805 157184840 -19789300 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1525 120 0 41 chrX 157184840 157185082 -19789058 - AluSx SINE Alu -49 263 32 396 0 0 0 chrX 157185977 157186021 -19788119 + (TA)n Simple_repeat Simple_repeat 2 45 0 1656 97 13 4 chrX 157186621 157186859 -19787281 + AluSx SINE Alu 37 276 -36 411 279 38 22 chrX 157186960 157186974 -19787166 + L2 LINE L2 2291 2303 -1011 1787 120 65 14 chrX 157186974 157187250 -19786890 - AluJb SINE Alu -22 290 1 411 279 38 22 chrX 157187250 157187418 -19786722 + L2 LINE L2 2303 2476 -838 1060 206 70 73 chrX 157187728 157187810 -19786330 + L1MC4 LINE L1 6460 6541 -1501 2202 70 40 36 chrX 157187810 157188111 -19786029 + AluY SINE Alu 1 302 -9 1060 206 70 73 chrX 157188111 157188221 -19785919 + L1MC4 LINE L1 6541 6650 -1392 627 108 0 0 chrX 157188221 157188314 -19785826 + (CA)n Simple_repeat Simple_repeat 2 94 0 1060 206 70 73 chrX 157188314 157188475 -19785665 + L1MC4 LINE L1 6650 6813 -1229 * 2154 211 92 4 chrX 157188468 157189584 -19784556 + L1MB8 LINE L1 4802 6172 -6 659 72 0 0 chrX 157189784 157189867 -19784273 - L1M2 LINE L1 -4577 2272 2190 1137 126 57 6 chrX 157190005 157190180 -19783960 + MSTB LTR MaLR 243 426 0 2327 214 56 10 chrX 157191006 157191526 -19782614 + REP3 LTR ERV 1 544 -18 865 207 31 78 chrX 157191534 157191790 -19782350 + L1MC4 LINE L1 7794 8037 -5 902 249 205 16 chrX 157192560 157192990 -19781150 - L2 LINE L2 -993 2321 1811 202 264 28 14 chrX 157193029 157193101 -19781039 - MIR SINE MIR -73 189 117 2360 87 3 0 chrX 157193454 157193754 -19780386 - AluSp SINE Alu -12 301 1 311 77 0 19 chrX 157194457 157194509 -19779631 + (TG)n Simple_repeat Simple_repeat 2 52 0 907 221 43 5 chrX 157194537 157194745 -19779395 - L2 LINE L2 -239 3074 2859 331 243 171 9 chrX 157194749 157194860 -19779280 - MER94 DNA DNA -5 129 1 767 192 127 45 chrX 157194876 157195121 -19779019 - L2 LINE L2 -525 2789 2525 432 273 110 0 chrX 157195129 157195283 -19778857 - MIR SINE MIR 0 262 92 2229 119 0 0 chrX 157196378 157196673 -19777467 - AluSx SINE Alu -17 295 1 187 182 0 0 chrX 157196676 157196709 -19777431 - L2 LINE L2 -12 3301 3269 620 258 72 34 chrX 157196765 157197029 -19777111 + L1MC4a LINE L1 5677 5950 -1858 341 252 192 70 chrX 157197056 157197358 -19776782 - HAL1 LINE L1 -4 2503 2165 1695 245 169 29 chrX 157197565 157198329 -19775811 - HAL1 LINE L1 -355 2152 1282 2840 199 42 15 chrX 157198520 157199234 -19774906 + L1M4 LINE L1 2596 3328 -2818 1293 181 8 21 chrX 157199253 157199496 -19774644 + L1 LINE L1 14 253 -7312 5938 162 82 1 chrX 157199507 157200526 -19773614 + L1 LINE L1 384 1485 -6080 693 140 44 0 chrX 157200529 157200643 -19773497 + L1 LINE L1 5068 5186 -2379 3476 229 24 33 chrX 157200647 157201577 -19772563 + L1M4 LINE L1 3360 4280 -1866 496 77 0 0 chrX 157201595 157201660 -19772480 - MER54B LTR ERVL -728 65 1 760 172 18 31 chrX 157201660 157201780 -19772360 + L1MB8 LINE L1 6018 6137 -41 2272 139 83 23 chrX 157201780 157202167 -19771973 + LTR57 LTR ERVL 1 410 -1 760 172 18 31 chrX 157202167 157202209 -19771931 + L1MB8 LINE L1 6137 6178 0 1460 246 25 62 chrX 157202214 157202777 -19771363 + L1MEc LINE L1 681 1222 -5174 1912 147 0 19 chrX 157202777 157203089 -19771051 + AluJb SINE Alu 1 306 -6 1460 246 25 62 chrX 157203089 157203118 -19771022 + L1MEc LINE L1 1222 1251 -5145 539 192 26 66 chrX 157203099 157203176 -19770964 + L1MEc LINE L1 2708 2778 -3437 * 2360 74 0 0 chrX 157203176 157203474 -19770666 + AluY SINE Alu 1 298 -13 539 192 26 66 chrX 157203474 157203547 -19770593 + L1MEc LINE L1 2778 2852 -3363 990 247 98 3 chrX 157203556 157203912 -19770228 + L1MEc LINE L1 3047 3436 -2779 599 276 18 58 chrX 157204856 157205081 -19769059 + L1MDb LINE L1 859 1074 -5335 842 182 94 0 chrX 157205085 157205244 -19768896 - MER46A DNA MER2_type 0 236 63 * 3472 126 76 26 chrX 157205240 157205385 -19768755 + Tigger3(Golem) DNA MER2_type 2396 2532 -497 2192 136 0 0 chrX 157205385 157205695 -19768445 - AluSq SINE Alu -3 310 1 3472 126 76 26 chrX 157205695 157206152 -19767988 + Tigger3(Golem) DNA MER2_type 2532 3028 -1 2340 144 34 0 chrX 157206152 157206533 -19767607 + L1MB5 LINE L1 5781 6174 0 805 163 0 7 chrX 157206533 157206674 -19767466 + L1M3 LINE L1 5322 5461 -717 * 4205 179 107 6 chrX 157206672 157207694 -19766446 + L1M3 LINE L1 4559 5685 -483 1277 141 15 0 chrX 157207694 157207892 -19766248 + L1M3 LINE L1 5474 5674 -509 1363 73 115 0 chrX 157207893 157208085 -19766055 + AluY SINE Alu 83 296 -15 433 102 0 0 chrX 157208085 157208144 -19765996 + L1M3 LINE L1 5661 5719 -452 278 251 87 57 chrX 157208170 157208469 -19765671 - L1M4 LINE L1 -2999 3147 2840 852 251 62 0 chrX 157208592 157208803 -19765337 + MER58A DNA MER1_type 1 224 0 1358 221 53 97 chrX 157209216 157209742 -19764398 - MLT1J LTR MaLR -7 504 2 252 240 39 19 chrX 157209775 157209879 -19764261 - L1M4 LINE L1 -3838 2308 2203 3027 200 57 26 chrX 157210112 157210848 -19763292 - L1MD3 LINE L1 0 8036 7127 1557 198 52 3 chrX 157210848 157210992 -19763148 - MER2 DNA MER2_type 0 344 208 1885 153 0 17 chrX 157210992 157211293 -19762847 - AluJb SINE Alu -16 296 1 1557 198 52 3 chrX 157211293 157211476 -19762664 - MER2 DNA MER2_type -136 208 1 3027 200 57 26 chrX 157211476 157211899 -19762241 - L1MD3 LINE L1 -909 7127 6718 925 291 12 57 chrX 157211913 157212340 -19761800 - L1ME1 LINE L1 -164 6071 5679 * 2190 217 34 20 chrX 157212337 157212950 -19761190 - L1ME1 LINE L1 -1608 4607 3986 287 143 79 0 chrX 157212948 157213011 -19761129 - L1ME1 LINE L1 -4275 2121 2054 * 287 184 0 0 chrX 157213015 157213064 -19761076 - MER20 DNA MER1_type 0 219 171 240 35 0 0 chrX 157213064 157213093 -19761047 + (TG)n Simple_repeat Simple_repeat 2 30 0 401 237 0 0 chrX 157213093 157213169 -19760971 - MER20 DNA MER1_type -142 77 2 3665 231 95 60 chrX 157213170 157214090 -19760050 - L1ME1 LINE L1 -4339 2057 1005 384 117 0 0 chrX 157214090 157214150 -19759990 - Alu SINE Alu 0 302 243 3665 231 95 60 chrX 157214150 157214670 -19759470 - L1ME1 LINE L1 -5391 1005 505 515 247 38 25 chrX 157214696 157214854 -19759286 - L1ME1 LINE L1 -6012 384 225 534 239 93 37 chrX 157214862 157214952 -19759188 - L1MC4a LINE L1 -1221 6587 6503 504 92 26 0 chrX 157214952 157215028 -19759112 - L1MA10 LINE L1 -11 6323 6246 534 239 93 37 chrX 157215028 157215237 -19758903 - L1MC4a LINE L1 -1305 6503 6114 2220 75 0 0 chrX 157215336 157215604 -19758536 + AluSx SINE Alu 5 272 -40 646 271 65 18 chrX 157216607 157216947 -19757193 + L1ME LINE L1 4729 5084 -1062 262 270 87 47 chrX 157216950 157217306 -19756834 + L1ME LINE L1 5206 5397 -749 277 269 81 0 chrX 157217315 157217468 -19756672 + L1ME LINE L1 5713 5886 -278 185 315 83 28 chrX 157218310 157218418 -19755722 - L2 LINE L2 0 3313 3200 * 670 245 89 52 chrX 157218405 157218674 -19755466 + L2 LINE L2 3035 3313 0 181 198 11 77 chrX 157218747 157218838 -19755302 - L2 LINE L2 -1904 1410 1326 182 318 91 0 chrX 157220395 157220461 -19753679 + L2 LINE L2 3232 3303 -10 307 269 80 34 chrX 157220967 157221142 -19752998 + L1MEc LINE L1 356 538 -6183 295 184 11 35 chrX 157221147 157221234 -19752906 + L1MEc LINE L1 1637 1721 -4819 2247 76 0 7 chrX 157221359 157221662 -19752478 + L1PA7 LINE L1 5854 6154 0 395 355 23 6 chrX 157222127 157222299 -19751841 + MIR SINE MIR 20 194 -68 1090 295 27 29 chrX 157222469 157223288 -19750852 - HERV16 LTR ERVL -1901 3095 2261 413 283 62 0 chrX 157223352 157223497 -19750643 - HERV16 LTR ERVL -4169 827 674 233 216 20 0 chrX 157223617 157223668 -19750472 + MIR SINE MIR 180 231 -31 466 290 142 55 chrX 157225716 157226508 -19747632 + L2 LINE L2 2458 3313 0 15749 178 25 4 chrX 157226602 157232040 -19742100 - L1PB1 LINE L1 -3 6864 1312 764 185 85 26 chrX 157232101 157232290 -19741850 - L2 LINE L2 -3 3310 3111 1824 171 7 3 chrX 157232397 157232695 -19741445 - AluJb SINE Alu -13 299 1 1573 148 18 18 chrX 157232841 157233118 -19741022 + MER2 DNA MER2_type 59 335 -10 296 282 0 0 chrX 157233349 157233434 -19740706 + L1ME LINE L1 5740 5824 -297 250 212 0 30 chrX 157233687 157233753 -19740387 + (CATATA)n Simple_repeat Simple_repeat 3 66 0 2362 103 0 0 chrX 157233811 157234123 -19740017 - AluSx SINE Alu 0 312 1 14694 38 0 0 chrX 157234177 157236717 -19737423 - L1PA4 LINE L1 0 6155 3617 1679 115 90 0 chrX 157236888 157237152 -19736988 - AluSg SINE Alu 0 299 14 551 316 98 13 chrX 157237184 157237785 -19736355 - L1M4 LINE L1 -1465 4681 4030 246 279 89 50 chrX 157237932 157238537 -19735603 - L1M4 LINE L1 -2603 3543 2915 215 317 117 25 chrX 157238679 157238799 -19735341 + L2 LINE L2 2934 3064 -208 3755 236 131 46 chrX 157239092 157241949 -19732191 - L1ME3A LINE L1 -3 6167 2872 1429 232 31 21 chrX 157242107 157242586 -19731554 + L1ME LINE L1 896 1379 -5030 2111 219 15 16 chrX 157242592 157243048 -19731092 + L1ME LINE L1 5043 5499 -907 2984 187 93 33 chrX 157243048 157243737 -19730403 - MER44D DNA MER2_type -1 604 3 2111 219 15 16 chrX 157243737 157243827 -19730313 + L1ME LINE L1 5499 5588 -818 * 4472 184 93 30 chrX 157243826 157244316 -19729824 + L1MB2 LINE L1 4110 4568 -1603 312 96 0 0 chrX 157244316 157244368 -19729772 - Alu SINE Alu 0 300 249 4472 184 93 30 chrX 157244368 157245784 -19728356 + L1MB2 LINE L1 4568 6171 0 433 308 141 27 chrX 157245780 157246425 -19727715 + L1ME1 LINE L1 1030 1927 -4636 * 210 273 0 15 chrX 157247387 157247453 -19726687 + CT-rich Low_complexity Low_complexity 3 67 0 544 291 48 34 chrX 157248195 157248401 -19725739 + MER63A DNA MER1_type 1 209 -1 285 354 22 6 chrX 157248816 157248997 -19725143 + L1ME1 LINE L1 4977 5160 -1222 305 278 42 0 chrX 157249034 157249106 -19725034 - L2 LINE L2 -46 3267 3193 1720 215 103 16 chrX 157249192 157249676 -19724464 + L1ME1 LINE L1 5788 6313 -89 1758 159 84 22 chrX 157249681 157250059 -19724081 - MSTB1 LTR MaLR 0 432 1 458 138 2 0 chrX 157250060 157250144 -19723996 + L1ME1 LINE L1 6319 6391 -11 225 197 121 15 chrX 157250392 157250458 -19723682 + L1ME LINE L1 5758 5830 -551 204 191 24 0 chrX 157252219 157252261 -19721879 + MER5A DNA MER1_type 8 50 -139 4446 191 48 49 chrX 157252445 157253034 -19721106 + L1MD2 LINE L1 4677 5265 -1094 1641 183 20 20 chrX 157253034 157253329 -19720811 + AluJo SINE Alu 1 295 -17 4446 191 48 49 chrX 157253329 157254410 -19719730 + L1MD2 LINE L1 5265 6346 -13 324 284 32 21 chrX 157254519 157254614 -19719526 + MIR3 SINE MIR 89 184 -24 615 294 83 51 chrX 157254743 157255093 -19719047 + L2 LINE L2 1751 2111 -1203 206 204 38 75 chrX 157458127 157458313 -19515827 + (TTAAG)n Simple_repeat Simple_repeat 2 180 0 270 118 50 84 chrX 157458566 157458685 -19515455 + (TTAAG)n Simple_repeat Simple_repeat 4 118 0 271 174 32 84 chrX 157459403 157459558 -19514582 + (TTAAG)n Simple_repeat Simple_repeat 2 148 0 398 95 42 0 chrX 157560469 157560564 -19413576 + (CA)n Simple_repeat Simple_repeat 1 99 0 * 1620 2 0 11 chrX 157560562 157560983 -19413157 + (CCCTAA)n Simple_repeat Simple_repeat 1 416 0 242 71 0 24 chrX 157560994 157561036 -19413104 + (CCCTA)n Simple_repeat Simple_repeat 1 41 0 871 41 0 34 chrX 157561061 157561207 -19412933 + (CCCTAA)n Simple_repeat Simple_repeat 3 143 0 5496 116 249 12 chrX 157561309 157562612 -19411528 - TAR1 Satellite telomeric -31 2080 469 376 252 163 25 chrX 157562635 157562827 -19411313 - L1ME LINE L1 -498 5668 5449 289 311 19 10 chrX 157562829 157562932 -19411208 - MER5B DNA MER1_type -74 104 1 322 230 38 0 chrX 157566403 157566494 -19407646 - MIR SINE MIR -65 143 49 207 196 0 20 chrX 157566932 157566983 -19407157 + CT-rich Low_complexity Low_complexity 4 53 0 203 162 0 0 chrX 157567854 157567891 -19406249 + (TGG)n Simple_repeat Simple_repeat 1 37 0 288 322 147 0 chrX 157570054 157570197 -19403943 + L2 LINE L2 2836 2999 -314 866 139 3 18 chrX 157570988 157571322 -19402818 + (CCCTAA)n Simple_repeat Simple_repeat 1 328 0 9015 90 19 4 chrX 157571361 157572732 -19401408 - L1P LINE L1 -4734 1412 22 1449 248 44 14 chrX 157572720 157573305 -19400835 - L1ME LINE L1 -804 5342 4740 * 327 236 56 20 chrX 157573308 157573503 -19400637 - L1ME LINE L1 -1597 4549 4348 1335 186 0 76 chrX 157573537 157573865 -19400275 + AluJb SINE Alu 1 303 -9 2019 126 0 0 chrX 157573890 157574168 -19399972 - AluSx SINE Alu -20 292 15 2159 104 7 3 chrX 157574852 157575160 -19398980 - AluSc SINE Alu 0 309 1 1613 122 3 82 chrX 157575161 157575464 -19398676 - AluSx SINE Alu -19 293 15 2127 85 4 0 chrX 157575936 157576241 -19397899 - AluSp SINE Alu 0 306 1 407 95 14 27 chrX 157576324 157576398 -19397742 + Alu SINE Alu 240 312 0 2135 113 0 28 chrX 157576699 157577017 -19397123 - AluSg1 SINE Alu 0 309 1 1893 149 0 20 chrX 157577017 157577319 -19396821 - AluSx SINE Alu -16 296 1 3509 104 15 0 chrX 157578101 157578572 -19395568 - MER66A LTR ERV1 0 478 1 745 214 145 28 chrX 157578722 157578909 -19395231 + MLT1C LTR MaLR 35 269 -198 2154 122 0 0 chrX 157578909 157579213 -19394927 + AluSq SINE Alu 1 304 -9 745 214 145 28 chrX 157579213 157579312 -19394828 + MLT1C LTR MaLR 269 355 -112 301 300 55 9 chrX 157579312 157579422 -19394718 + LTR35 LTR ERV1 4 118 -500 512 271 44 47 chrX 157579537 157579871 -19394269 + LTR35 LTR ERV1 349 618 0 * 608 189 0 8 chrX 157579871 157579989 -19394151 + MLT1C LTR MaLR 351 467 0 282 95 0 0 chrX 157581041 157581083 -19393057 + (CTG)n Simple_repeat Simple_repeat 3 44 0 1016 110 2 5 chrX 157581759 157582350 -19391790 + (CA)n Simple_repeat Simple_repeat 1 589 0 195 286 116 14 chrX 157584034 157584181 -19389959 + L2 LINE L2 2248 2409 -905 183 272 0 0 chrX 157584916 157585008 -19389132 + (CA)n Simple_repeat Simple_repeat 1 92 0 190 183 28 0 chrX 157586047 157586118 -19388022 + (CA)n Simple_repeat Simple_repeat 2 74 0 463 324 6 17 chrX 157586241 157586420 -19387720 + (CA)n Simple_repeat Simple_repeat 1 177 0 195 332 28 42 chrX 157588457 157588577 -19385563 - MIR SINE MIR -68 140 37 434 294 48 0 chrX 157588708 157588834 -19385306 - MIR SINE MIR -50 212 81 2037 101 10 27 chrX 157588850 157589148 -19384992 - AluSx SINE Alu -19 293 1 228 164 109 0 chrX 157590247 157590302 -19383838 - MIR SINE MIR -56 152 92 207 154 0 0 chrX 157591028 157591062 -19383078 + (TA)n Simple_repeat Simple_repeat 1 35 0 2001 122 0 33 chrX 157591062 157591365 -19382775 - AluSx SINE Alu -19 293 1 25 0 0 0 chrX 157592621 157592646 -19381494 + AT_rich Low_complexity Low_complexity 1 25 0 2265 88 3 7 chrX 157594104 157594412 -19379728 - AluSc SINE Alu -2 307 1 2082 110 10 7 chrX 157594412 157594711 -19379429 - AluSx SINE Alu -10 302 1 663 201 0 22 chrX 157594885 157595019 -19379121 + FLAM_C SINE Alu 3 133 0 695 143 0 42 chrX 157595068 157595187 -19378953 - FRAM SINE Alu -1 175 62 682 293 69 18 chrX 157595192 157595545 -19378595 - L1ME LINE L1 -397 5724 5352 1190 231 44 42 chrX 157595746 157596287 -19377853 + L1ME LINE L1 310 851 -5219 1854 131 4 0 chrX 157596317 157596585 -19377555 + AluSx SINE Alu 44 312 0 1772 140 18 21 chrX 157596645 157596931 -19377209 + AluJb SINE Alu 1 285 -27 253 247 141 0 chrX 157596972 157597057 -19377083 + MIR SINE MIR 104 200 -62 300 177 165 0 chrX 157597073 157597152 -19376988 + MER58 DNA MER1_type 1 92 -123 1798 127 72 4 chrX 157597182 157597458 -19376682 - AluJo SINE Alu -17 295 1 1034 114 54 114 chrX 157597458 157597702 -19376438 - L1MB3 LINE L1 -42 6141 5915 2185 117 0 19 chrX 157597702 157598019 -19376121 - AluSx SINE Alu -1 311 1 1034 114 54 114 chrX 157598019 157598054 -19376086 - L1MB3 LINE L1 -268 5915 5879 547 214 0 14 chrX 157598049 157598189 -19375951 - L1M4 LINE L1 -3803 2343 2206 * 1127 173 42 28 chrX 157598194 157598408 -19375732 - AluJb SINE Alu -9 303 87 945 143 63 90 chrX 157598431 157598608 -19375532 - L1MA7 LINE L1 -11 6280 6113 1355 220 30 20 chrX 157598608 157598908 -19375232 + AluJo SINE Alu 1 303 -9 945 143 63 90 chrX 157598908 157599031 -19375109 - L1MA7 LINE L1 -178 6113 5988 1797 92 9 38 chrX 157599031 157599378 -19374762 - L1M4c LINE L1 -3931 2453 2117 1074 180 0 21 chrX 157599378 157599393 -19374747 + AluJb SINE Alu 122 136 -176 1697 166 17 7 chrX 157599393 157599694 -19374446 + AluSx SINE Alu 1 304 -8 1074 180 0 21 chrX 157599694 157599867 -19374273 + AluJb SINE Alu 136 306 -6 2651 147 46 21 chrX 157599867 157600175 -19373965 - L1M4c LINE L1 -4280 2104 1774 1934 120 62 0 chrX 157600175 157600449 -19373691 + AluSx SINE Alu 1 291 -21 2651 147 46 21 chrX 157600449 157600706 -19373434 - L1M4c LINE L1 -4610 1774 1525 2022 121 3 23 chrX 157600706 157601011 -19373129 + AluSx SINE Alu 1 299 -13 22 35 0 0 chrX 157601030 157601059 -19373081 + AT_rich Low_complexity Low_complexity 1 29 0 1494 109 69 7 chrX 157601059 157601282 -19372858 + MER84-int LTR ERV1 291 555 -4399 659 135 0 0 chrX 157601276 157601372 -19372768 + MER84-int LTR ERV1 684 779 -4175 * 10758 117 36 6 chrX 157601371 157602928 -19371212 + MER84-int LTR ERV1 894 2497 -2457 1811 143 82 28 chrX 157602928 157603284 -19370856 - THE1C LTR MaLR 0 375 1 4365 128 6 9 chrX 157603289 157603921 -19370219 - THE1C-int LTR MaLR -6 1574 945 287 108 0 0 chrX 157603922 157603959 -19370181 - THE1C-int LTR MaLR -614 966 930 4453 55 47 33 chrX 157603962 157604562 -19369578 + LTR14B LTR ERVK 1 608 0 1622 95 0 14 chrX 157604562 157604784 -19369356 + HERVK14 LTR ERVK 1 219 -5726 248 235 132 15 chrX 157604860 157604928 -19369212 - MER69 DNA AcHobo -2450 76 1 269 61 0 0 chrX 157605975 157606008 -19368132 + HERVK14C LTR ERVK 187 219 -7024 333 114 0 129 chrX 157606008 157606078 -19368062 + HERVK14C LTR ERVK 161 221 -7022 302 78 255 0 chrX 157606047 157606098 -19368042 + HERVK14C LTR ERVK 155 218 -7025 * 349 36 254 0 chrX 157606111 157606166 -19367974 + HERVK14C LTR ERVK 150 218 -7025 284 271 0 0 chrX 157606214 157606284 -19367856 + HERVK14C LTR ERVK 6349 6418 -999 512 299 32 11 chrX 157606411 157606599 -19367541 + HERVK14C LTR ERVK 6401 6588 -655 4177 56 45 92 chrX 157606790 157607428 -19366712 + LTR14B LTR ERVK 1 608 0 5695 133 6 57 chrX 157607429 157607874 -19366266 - THE1C-int LTR MaLR -646 934 565 2266 119 3 0 chrX 157607874 157608177 -19365963 - AluSx SINE Alu -8 304 1 5695 133 6 57 chrX 157608177 157608713 -19365427 - THE1C-int LTR MaLR -1015 565 3 1693 151 108 17 chrX 157608715 157609059 -19365081 - THE1C LTR MaLR 0 375 1 7941 126 7 1 chrX 157609059 157610191 -19363949 + MER84-int LTR ERV1 2493 3631 -1323 253 98 20 20 chrX 157610197 157610248 -19363892 + (CCCTAA)n Simple_repeat Simple_repeat 4 54 0 1879 136 3 24 chrX 157610252 157610605 -19363535 - MER4A LTR ERV1 0 664 261 625 74 42 11 chrX 157610605 157610700 -19363440 - MER4A LTR ERV1 -566 98 1 352 120 0 27 chrX 157610700 157610775 -19363365 + (CCCTAA)n Simple_repeat Simple_repeat 6 78 0 1144 291 42 48 chrX 157610982 157611697 -19362443 + L1MC4 LINE L1 3676 4386 -1760 1699 135 94 8 chrX 157612714 157612980 -19361160 + AluJo SINE Alu 1 289 -23 810 231 11 11 chrX 157613266 157613448 -19360692 + AluJo SINE Alu 118 299 -13 578 200 33 0 chrX 157613448 157613598 -19360542 + L1MC4 LINE L1 4396 4550 -1596 1331 168 4 13 chrX 157613768 157614000 -19360140 + LTR2B LTR ERV1 261 490 0 45342 188 9 8 chrX 157614000 157621804 -19352336 + HERVE LTR ERV1 1 7812 -1 2000 186 70 32 chrX 157621823 157622265 -19351875 + LTR2B LTR ERV1 32 490 0 3827 107 16 9 chrX 157622679 157623241 -19350899 + MER61E LTR ERV1 1 566 -3 259 268 24 0 chrX 157623426 157623508 -19350632 + L1MC4 LINE L1 7763 7846 -196 229 253 36 12 chrX 157623544 157623627 -19350513 + L1MC4 LINE L1 7956 8040 -2 3183 237 109 31 chrX 157624268 157624633 -19349507 + L1MC4 LINE L1 4901 4426 -1720 670 212 0 0 chrX 157624633 157624751 -19349389 + FLAM_A SINE Alu 4 121 -12 3183 237 109 31 chrX 157624751 157625811 -19348329 + L1MC4 LINE L1 4425 5401 -745 1113 199 75 59 chrX 157625866 157626187 -19347953 - MER21B LTR ERV1 -60 803 478 457 160 0 0 chrX 157626187 157626262 -19347878 + MLT1A1 LTR MaLR 4 78 -287 6904 59 149 20 chrX 157626276 157627314 -19346826 + MER11A LTR ERVK 1 1266 0 1351 204 20 0 chrX 157627325 157627570 -19346570 + MLT1A1 LTR MaLR 115 364 -1 491 320 46 34 chrX 157627571 157627746 -19346394 - MER21B LTR ERV1 -378 485 309 1236 203 21 8 chrX 157627747 157627984 -19346156 - AluJo SINE Alu -24 288 49 1106 202 186 8 chrX 157627990 157628238 -19345902 - MER21B LTR ERV1 -553 310 19 493 205 0 0 chrX 157628260 157628338 -19345802 - MER21B LTR ERV1 -773 90 13 3784 203 120 69 chrX 157628389 157628815 -19345325 + L1MC3 LINE L1 6407 6810 -975 189 0 0 0 chrX 157628815 157628836 -19345304 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3784 203 120 69 chrX 157628836 157629053 -19345087 + L1MC3 LINE L1 6810 7014 -771 225 185 37 19 chrX 157629053 157629107 -19345033 + MLT1F1 LTR MaLR 35 89 -478 3784 203 120 69 chrX 157629107 157629713 -19344427 + L1MC3 LINE L1 7014 7777 -8 290 53 0 0 chrX 157629763 157629801 -19344339 + U3 snRNA snRNA 1 38 -179 2316 89 10 0 chrX 157630115 157630406 -19343734 + AluSg SINE Alu 1 294 -16 2624 145 24 14 chrX 157630947 157631540 -19342600 + MER4E LTR ERV1 1 766 0 332 294 27 14 chrX 157631613 157631759 -19342381 - LTR23 LTR ERV1 0 437 290 1662 200 100 47 chrX 157631869 157632339 -19341801 + MER50 LTR ERV1 240 734 0 5197 58 48 1 chrX 157632384 157633074 -19341066 + LTR30 LTR ERV1 1 722 0 623 98 87 0 chrX 157633075 157633167 -19340973 + MER51-int LTR ERV1 7225 7324 -492 583 201 117 65 chrX 157633167 157633390 -19340750 + LTR54 LTR ERV1 29 310 -188 3927 99 63 2 chrX 157633390 157633963 -19340177 - MER4B LTR ERV1 -2 608 1 583 201 117 65 chrX 157633963 157634045 -19340095 + LTR54 LTR ERV1 310 386 -112 447 164 9 109 chrX 157634063 157634211 -19339929 + MER57B-int LTR ERV1 7025 7537 0 852 279 48 32 chrX 157634229 157634606 -19339534 + MER57B LTR ERV1 52 434 0 719 87 0 19 chrX 157634673 157634777 -19339363 - LTR7 LTR ERV1 0 450 349 * 1491 164 111 0 chrX 157634774 157635054 -19339086 + MER52A LTR ERV1 1445 1755 0 593 202 50 106 chrX 157635632 157635954 -19338186 + L1M4 LINE L1 4305 4608 -1538 334 237 14 13 chrX 157636072 157636305 -19337835 + (CCCTAA)n Simple_repeat Simple_repeat 1 233 0 1357 227 47 28 chrX 157636458 157636819 -19337321 - MER87 LTR ERV1 0 541 174 329 298 17 28 chrX 157637433 157637614 -19336526 + (CCCGAA)n Simple_repeat Simple_repeat 2 180 0 232 336 14 14 chrX 157637732 157637872 -19336268 + (CCCCAA)n Simple_repeat Simple_repeat 2 141 0 * 255 263 0 30 chrX 157637779 157637878 -19336262 + (CCCTAA)n Simple_repeat Simple_repeat 3 98 0 200 306 6 39 chrX 157638367 157638547 -19335593 + (CCCTAA)n Simple_repeat Simple_repeat 1 174 0 * 291 319 7 28 chrX 157638423 157638567 -19335573 + (CCCGAA)n Simple_repeat Simple_repeat 5 145 0 252 274 40 74 chrX 157638975 157639150 -19334990 + LTR31 LTR ERV1 442 610 -9 205 109 43 0 chrX 157639224 157639270 -19334870 + (CCCTAA)n Simple_repeat Simple_repeat 6 53 0 237 316 0 32 chrX 157639414 157639569 -19334571 + (CCCGAA)n Simple_repeat Simple_repeat 4 153 0 217 217 0 22 chrX 157639632 157639678 -19334462 + (CCCCAA)n Simple_repeat Simple_repeat 5 49 0 204 373 25 0 chrX 157639694 157639852 -19334288 + (CCCCAG)n Simple_repeat Simple_repeat 5 166 0 * 313 294 5 54 chrX 157639779 157639963 -19334177 + (CCCCAA)n Simple_repeat Simple_repeat 3 177 0 250 287 0 23 chrX 157640077 157640164 -19333976 + (CCCCAA)n Simple_repeat Simple_repeat 5 89 0 235 339 0 9 chrX 157640209 157640324 -19333816 + (CCCCAA)n Simple_repeat Simple_repeat 2 115 0 219 288 25 42 chrX 157640532 157640650 -19333490 + (CCCGAA)n Simple_repeat Simple_repeat 2 117 0 215 333 0 22 chrX 157640604 157640784 -19333356 + (CCCTAA)n Simple_repeat Simple_repeat 1 176 0 * 326 348 7 0 chrX 157640858 157640993 -19333147 + (CCCCAA)n Simple_repeat Simple_repeat 2 137 0 218 355 0 9 chrX 157641297 157641407 -19332733 + (CCCCAA)n Simple_repeat Simple_repeat 2 110 0 414 275 0 60 chrX 157641513 157641680 -19332460 + (CCCGAA)n Simple_repeat Simple_repeat 2 158 0 277 343 15 15 chrX 157641683 157641730 -19332410 + (CCCCAG)n Simple_repeat Simple_repeat 3 49 -90 2604 170 53 16 chrX 157641730 157642183 -19331957 - MER70A LTR ERVL -2 470 1 277 343 15 15 chrX 157642183 157642272 -19331868 + (CCCCAG)n Simple_repeat Simple_repeat 48 139 0 275 343 17 34 chrX 157642376 157642554 -19331586 + (CCCGAA)n Simple_repeat Simple_repeat 5 179 0 * 300 305 7 27 chrX 157642481 157642831 -19331309 + (CCCTAA)n Simple_repeat Simple_repeat 1 343 0 2331 108 0 10 chrX 157642838 157643144 -19330996 + AluSx SINE Alu 1 303 -9 471 227 196 26 chrX 157643649 157643878 -19330262 - L1MEc LINE L1 -3719 2496 2229 * 1948 243 72 24 chrX 157643868 157644355 -19329785 - L1MEc LINE L1 -5234 1162 700 896 188 41 37 chrX 157644355 157644573 -19329567 + MER20 DNA MER1_type 1 219 0 1948 243 72 24 chrX 157644573 157645112 -19329028 - L1MEc LINE L1 -5696 700 35 1241 311 91 30 chrX 157645482 157645809 -19328331 + MLT2E LTR ERVL 32 409 -219 2213 144 19 16 chrX 157645809 157646183 -19327957 - THE1C LTR MaLR 0 375 1 1241 311 91 30 chrX 157646183 157646418 -19327722 + MLT2E LTR ERVL 409 628 0 24 53 0 0 chrX 157649722 157649760 -19324380 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chrX 157649933 157649960 -19324180 + AT_rich Low_complexity Low_complexity 1 27 0 876 176 0 0 chrX 157650039 157650181 -19323959 - FLAM_C SINE Alu -1 142 1 192 125 0 0 chrX 157650400 157650432 -19323708 + (CA)n Simple_repeat Simple_repeat 1 32 0 690 180 81 19 chrX 157650960 157651171 -19322969 - Charlie1 DNA MER1_type 0 2761 2538 255 281 22 11 chrX 157651955 157652044 -19322096 + L2 LINE L2 1583 1672 -1642 819 232 44 27 chrX 157652085 157652378 -19321762 + L1ME3A LINE L1 5614 5911 -259 1149 142 0 0 chrX 157652378 157652540 -19321600 - AluJb SINE Alu -14 298 137 774 224 60 20 chrX 157652554 157652755 -19321385 + L1ME3A LINE L1 5947 6155 -15 228 295 32 53 chrX 157653360 157653455 -19320685 - L2 LINE L2 0 3313 3221 1335 166 14 17 chrX 157653609 157653633 -19320507 - L1 LINE L1 -1479 4667 4644 2396 163 28 7 chrX 157653633 157654092 -19320048 - L1MA9 LINE L1 0 6312 5844 1335 166 14 17 chrX 157654092 157654362 -19319778 - L1 LINE L1 -1502 4644 4374 40210 54 5 1 chrX 157654386 157660492 -19313648 + L1PA5 LINE L1 11 6147 -7 186 150 0 0 chrX 157660505 157660545 -19313595 + (A)n Simple_repeat Simple_repeat 1 40 0 1385 216 0 48 chrX 157660545 157660855 -19313285 - AluJo SINE Alu -17 295 1 1347 243 80 18 chrX 157660936 157661335 -19312805 + MER77 LTR ERV1 178 601 -4 2452 73 31 13 chrX 157661643 157662024 -19312116 + LTR23 LTR ERV1 1 388 -49 285 232 32 21 chrX 157662083 157662178 -19311962 + HAL1 LINE L1 1536 1631 -876 1716 216 65 34 chrX 157662454 157662927 -19311213 + MLT1D LTR MaLR 16 503 -2 1748 161 7 20 chrX 157662987 157663310 -19310830 + AluJb SINE Alu 1 319 0 264 275 55 42 chrX 157663386 157663596 -19310544 + L1M2 LINE L1 1728 2201 -4226 329 227 31 117 chrX 157663654 157663782 -19310358 + Tigger1 DNA MER2_type 1 117 -2301 1996 49 4 0 chrX 157663828 157664075 -19310065 - L1PA7 LINE L1 0 6154 5907 7634 117 41 4 chrX 157664075 157665323 -19308817 + Tigger1 DNA MER2_type 104 1397 -1021 641 101 0 10 chrX 157665323 157665422 -19308718 + MER4A LTR ERV1 1 98 -566 1662 126 3 77 chrX 157665422 157665795 -19308345 + MER4A LTR ERV1 261 664 0 * 5610 93 13 10 chrX 157665795 157666619 -19307521 + Tigger1 DNA MER2_type 1394 2220 -198 1729 127 16 22 chrX 157666619 157666935 -19307205 + L1MB4 LINE L1 5861 6174 -6 422 174 0 0 chrX 157666946 157667032 -19307108 + L1MB8 LINE L1 6093 6178 0 795 221 128 7 chrX 157667188 157667469 -19306671 + L1ME3 LINE L1 1148 1462 -5145 2303 210 61 52 chrX 157667528 157668372 -19305768 + L1ME3 LINE L1 1403 2440 -4167 3063 226 130 24 chrX 157668373 157669587 -19304553 + L1ME3 LINE L1 3778 5120 -1306 1325 225 88 6 chrX 157669588 157669973 -19304167 + L1ME3 LINE L1 6037 6443 -7 193 231 39 19 chrX 157670200 157670252 -19303888 - MIR SINE MIR -124 84 32 1254 207 41 4 chrX 157670379 157670621 -19303519 - MIR SINE MIR 0 262 12 1651 171 13 9 chrX 157671485 157671801 -19302339 + L1MB8 LINE L1 1313 1629 -5220 * 2713 170 11 36 chrX 157671798 157672409 -19301731 + L1MEc LINE L1 3616 4211 -2215 30365 100 18 57 chrX 157672447 157678846 -19295294 + L1PA7 LINE L1 12 6151 -3 7263 133 18 24 chrX 157679001 157681394 -19292746 + L1MEc LINE L1 4208 6572 -11 927 206 27 14 chrX 157681397 157681616 -19292524 + MLT1A2 LTR MaLR 153 374 0 7308 197 53 28 chrX 157681619 157682083 -19292057 + L1MB8 LINE L1 3743 4194 -2686 1490 142 0 30 chrX 157682083 157682315 -19291825 + AluJo SINE Alu 1 225 -87 7308 197 53 28 chrX 157682315 157682355 -19291785 + L1MB8 LINE L1 4194 4232 -2648 360 123 31 0 chrX 157682355 157682420 -19291720 + AluJo SINE Alu 234 300 -2 7308 197 53 28 chrX 157682420 157682617 -19291523 + L1MB8 LINE L1 4232 4423 -2457 10171 51 60 10 chrX 157682617 157683956 -19290184 + SVA Other Other 1 1386 0 7308 197 53 28 chrX 157683956 157684682 -19289458 + L1MB8 LINE L1 4423 5129 -1751 1949 179 96 9 chrX 157684682 157685111 -19289029 - MER31B LTR ERV1 0 466 1 7308 197 53 28 chrX 157685111 157686286 -19287854 + L1MB8 LINE L1 5129 6430 -450 244 0 56 0 chrX 157686286 157686322 -19287818 + (TA)n Simple_repeat Simple_repeat 2 39 0 7308 197 53 28 chrX 157686322 157686785 -19287355 + L1MB8 LINE L1 6430 6880 0 7614 22 0 0 chrX 157686845 157687981 -19286159 - L1PA3 LINE L1 -3 6152 5015 13752 29 2 0 chrX 157687981 157689689 -19284451 + L1PA3 LINE L1 3293 5004 -1142 27 49 0 0 chrX 157690942 157690983 -19283157 + AT_rich Low_complexity Low_complexity 1 41 0 369 233 114 80 chrX 157691258 157691434 -19282706 - MIR SINE MIR -4 258 77 201 74 0 0 chrX 157691640 157691667 -19282473 + (TG)n Simple_repeat Simple_repeat 1 27 0 2762 175 49 62 chrX 157691838 157692558 -19281582 + L1ME2 LINE L1 5409 6118 -46 302 296 92 46 chrX 157692595 157692747 -19281393 + L3 LINE CR1 1412 1570 -7 418 295 14 14 chrX 157693195 157693334 -19280806 - MIR SINE MIR -85 177 39 216 244 0 0 chrX 157693642 157693683 -19280457 + (TG)n Simple_repeat Simple_repeat 2 42 0 1107 209 109 52 chrX 157693900 157694322 -19279818 + Charlie4a DNA MER1_type 1 446 -62 316 265 108 10 chrX 157694403 157694505 -19279635 + MLT1L LTR MaLR 146 257 -358 2317 116 12 6 chrX 157695122 157695457 -19278683 - MER1B DNA MER1_type 0 337 1 548 348 58 77 chrX 157695993 157696291 -19277849 - L2 LINE L2 -16 3256 2954 2170 126 0 13 chrX 157696291 157696601 -19277539 + AluJb SINE Alu 1 306 -6 548 348 58 77 chrX 157696601 157696887 -19277253 - L2 LINE L2 -318 2954 2658 201 39 0 0 chrX 157696887 157696913 -19277227 + (A)n Simple_repeat Simple_repeat 1 26 0 548 348 58 77 chrX 157696913 157697153 -19276987 - L2 LINE L2 -614 2658 2415 553 311 171 24 chrX 157697225 157697382 -19276758 + L2 LINE L2 1854 1987 -1327 1550 202 94 9 chrX 157697382 157697723 -19276417 + MLT1A2 LTR MaLR 1 370 -4 553 311 171 24 chrX 157697723 157698034 -19276106 + L2 LINE L2 1987 2391 -923 2289 85 0 0 chrX 157698158 157698469 -19275671 + AluSq SINE Alu 1 311 0 335 338 71 33 chrX 157698539 157698834 -19275306 - L2 LINE L2 -196 3076 2772 289 303 37 18 chrX 157699107 157699216 -19274924 + MLT1J2 LTR MaLR 65 175 -275 333 310 82 0 chrX 157699937 157700095 -19274045 + MLT1J LTR MaLR 9 179 -332 559 301 65 68 chrX 157700484 157700550 -19273590 + L2 LINE L2 2653 2718 -596 2158 113 0 0 chrX 157700550 157700860 -19273280 + AluSx SINE Alu 1 310 0 559 301 65 68 chrX 157700860 157701117 -19273023 + L2 LINE L2 2718 2976 -338 516 256 80 8 chrX 157701163 157701288 -19272852 + L2 LINE L2 3138 3271 -1 238 325 26 8 chrX 157702033 157702150 -19271990 + L1ME LINE L1 5543 5661 -460 1035 259 36 4 chrX 157702199 157702450 -19271690 - MIR SINE MIR 0 262 4 477 250 41 87 chrX 157702749 157702945 -19271195 - MER5A DNA MER1_type 0 189 3 689 294 201 16 chrX 157703201 157703248 -19270892 + L2 LINE L2 1711 1748 -1566 2104 120 3 32 chrX 157703248 157703564 -19270576 - AluJb SINE Alu -5 307 1 689 294 201 16 chrX 157703564 157703955 -19270185 + L2 LINE L2 1748 2230 -1084 211 274 118 33 chrX 157703960 157704113 -19270027 - L2 LINE L2 -1145 2169 2004 1195 304 91 14 chrX 157704282 157704766 -19269374 + L3 LINE CR1 852 1372 -205 206 282 0 35 chrX 157705066 157705151 -19268989 + A-rich Low_complexity Low_complexity 3 84 0 2112 187 19 50 chrX 157705248 157705730 -19268410 - MLT1C LTR MaLR 0 467 1 284 114 0 0 chrX 157705743 157705787 -19268353 - U2 snRNA snRNA -144 44 1 2427 81 3 0 chrX 157706784 157707081 -19267059 + AluSp SINE Alu 1 298 -15 2364 72 13 16 chrX 157707199 157707503 -19266637 + AluSx SINE Alu 1 303 -9 252 328 62 16 chrX 157708033 157708161 -19265979 - L2 LINE L2 -5 3267 3134 324 247 129 0 chrX 157708336 157708429 -19265711 + L2 LINE L2 3209 3313 0 555 259 111 21 chrX 157708825 157709014 -19265126 + L2 LINE L2 3108 3313 0 225 344 67 56 chrX 157710175 157710550 -19263590 + L2 LINE L2 1353 1731 -1583 406 289 128 33 chrX 157710635 157710709 -19263431 + L2 LINE L2 1910 1976 -1338 2286 109 0 3 chrX 157710709 157711012 -19263128 - AluSg SINE Alu -8 302 1 406 289 128 33 chrX 157711012 157711210 -19262930 + L2 LINE L2 1976 2208 -1106 452 71 0 29 chrX 157711468 157711538 -19262602 + MSTA LTR MaLR 228 295 -133 1665 76 0 0 chrX 157711538 157711762 -19262378 + MER41A LTR ERV1 1 224 -330 280 251 71 0 chrX 157712030 157712124 -19262016 + MIR SINE MIR 46 150 -62 2343 71 16 3 chrX 157712281 157712591 -19261549 - L1PA10 LINE L1 -3 6165 5852 1310 119 0 0 chrX 157712974 157713151 -19260989 - FRAM SINE Alu -4 172 1 573 161 0 1 chrX 157714619 157714728 -19259412 - L1PA16 LINE L1 -191 5975 5868 1539 130 0 4 chrX 157714787 157715034 -19259106 - L1PA16 LINE L1 -266 5900 5655 724 156 7 21 chrX 157715035 157715176 -19258964 + L1PA16 LINE L1 6022 6160 -6 538 316 142 35 chrX 157715555 157715929 -19258211 + L2 LINE L2 2900 3313 0 368 270 17 35 chrX 157715956 157716071 -19258069 - MIR SINE MIR -33 229 117 317 207 232 0 chrX 157717327 157717409 -19256731 - L2 LINE L2 -18 3295 3195 183 216 0 0 chrX 157717612 157717649 -19256491 - MIR SINE MIR -129 133 97 282 209 45 15 chrX 157718107 157718174 -19255966 - L2 LINE L2 -3 3269 3201 314 231 256 8 chrX 157718263 157718384 -19255756 + MIR3 SINE MIR 48 198 -10 231 351 15 23 chrX 157718707 157718838 -19255302 + MER5B DNA MER1_type 43 172 -6 267 265 12 12 chrX 157718949 157719032 -19255108 - L3b LINE CR1 -172 1411 1329 203 283 0 0 chrX 157719376 157719422 -19254718 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 365 156 55 31 chrX 157719986 157720114 -19254026 + (TTAAA)n Simple_repeat Simple_repeat 4 134 0 1266 305 192 20 chrX 157720317 157720717 -19253423 - L2 LINE L2 -1052 2262 1932 2746 130 109 50 chrX 157720717 157721293 -19252847 + MER4B LTR ERV1 1 610 0 1266 305 192 20 chrX 157721293 157721852 -19252288 - L2 LINE L2 -1382 1932 1138 310 355 79 15 chrX 157721853 157722111 -19252029 - L1ME3A LINE L1 -250 5920 5642 3553 93 10 2 chrX 157722111 157722607 -19251533 + LTR3b LTR ERVK 1 500 0 318 295 0 18 chrX 157722607 157722719 -19251421 - L1ME3A LINE L1 -471 5650 5541 3197 109 39 15 chrX 157722726 157723260 -19250880 + LTR10A LTR ERV1 1 547 -62 25 0 0 0 chrX 157723604 157723629 -19250511 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chrX 157724449 157724471 -19249669 + AT_rich Low_complexity Low_complexity 1 22 0 361 209 5 0 chrX 157724662 157724746 -19249394 + FRAM SINE Alu 73 146 -20 3382 84 96 153 chrX 157724906 157725636 -19248504 - LTR12 LTR ERV1 0 688 1 804 227 34 45 chrX 157725719 157726010 -19248130 - pTR5 LTR ERV1 -1410 1028 741 430 363 99 18 chrX 157726071 157726355 -19247785 + L2 LINE L2 2384 2690 -624 1025 249 39 116 chrX 157726428 157726812 -19247328 + L1M4 LINE L1 915 1274 -4857 3189 139 36 0 chrX 157726812 157727367 -19246773 + L1MA3 LINE L1 5731 6305 0 1025 249 39 116 chrX 157727367 157727395 -19246745 + L1M4 LINE L1 1274 1303 -4828 189 0 0 0 chrX 157727396 157727417 -19246723 + (CA)n Simple_repeat Simple_repeat 2 22 0 592 206 27 96 chrX 157727424 157727643 -19246497 - LTR37A LTR ERV1 -168 258 55 565 297 78 29 chrX 157727846 157728267 -19245873 + L1M4 LINE L1 2795 3236 -2974 941 243 51 72 chrX 157728330 157728745 -19245395 - MLT1J1 LTR MaLR -32 414 9 431 320 54 19 chrX 157728751 157729010 -19245130 + L1M4 LINE L1 3301 3568 -2642 1396 158 0 4 chrX 157729014 157729242 -19244898 + L1PA15 LINE L1 5939 6165 0 40 49 0 0 chrX 157729492 157729553 -19244587 + AT_rich Low_complexity Low_complexity 1 61 0 772 306 119 58 chrX 157729810 157730117 -19244023 + L1M4 LINE L1 4316 4603 -1607 2094 131 0 0 chrX 157730117 157730407 -19243733 - AluSq SINE Alu -23 290 1 772 306 119 58 chrX 157730407 157730535 -19243605 + L1M4 LINE L1 4603 4722 -1488 2694 16 7 0 chrX 157730535 157730841 -19243299 - AluY SINE Alu -3 308 1 772 306 119 58 chrX 157730841 157731155 -19242985 + L1M4 LINE L1 4722 5015 -1195 2122 102 0 3 chrX 157731155 157731491 -19242649 + AluSq SINE Alu 1 335 0 772 306 119 58 chrX 157731491 157731756 -19242384 + L1M4 LINE L1 5015 5395 -815 683 106 0 0 chrX 157731874 157731978 -19242162 - L1MA5 LINE L1 -331 5969 5866 1135 189 154 0 chrX 157731979 157732238 -19241902 - MSTD LTR MaLR -58 338 40 1800 119 4 0 chrX 157732248 157732492 -19241648 + AluSx SINE Alu 1 245 -67 26 64 0 0 chrX 157732551 157732598 -19241542 + AT_rich Low_complexity Low_complexity 1 47 0 494 175 26 0 chrX 157732653 157732767 -19241373 + L1MC4 LINE L1 7926 8042 0 2321 92 10 0 chrX 157732838 157733144 -19240996 - AluSq SINE Alu -4 309 1 873 227 113 51 chrX 157733202 157733555 -19240585 - L1MEd LINE L1 -5302 817 443 391 357 43 43 chrX 157733601 157733929 -19240211 - L1MEd LINE L1 -5737 382 55 * 497 343 138 16 chrX 157733913 157734473 -19239667 - L1 LINE L1 -3235 2911 2284 581 333 101 14 chrX 157734532 157734829 -19239311 + L2 LINE L2 1609 1931 -1383 935 210 94 83 chrX 157734874 157735095 -19239045 - L1ME1 LINE L1 -7 6159 5942 2524 77 0 6 chrX 157735095 157735408 -19238732 + AluY SINE Alu 1 311 0 935 210 94 83 chrX 157735408 157735651 -19238489 - L1ME1 LINE L1 -224 5942 5703 320 188 0 0 chrX 157735651 157735720 -19238420 - L1PB4 LINE L1 -1 7115 7047 935 210 94 83 chrX 157735720 157735791 -19238349 - L1ME1 LINE L1 -463 5703 5410 23914 45 11 6 chrX 157735791 157739555 -19234585 + L1PA5 LINE L1 2379 6147 -7 2839 234 28 1 chrX 157739868 157740659 -19233481 - L1ME1 LINE L1 -1082 5064 4253 2855 157 57 20 chrX 157740700 157740994 -19233146 - L1MA9 LINE L1 -25 6287 5994 1094 222 151 13 chrX 157740994 157741475 -19232665 - L1PB4 LINE L1 -181 6935 6377 446 164 250 0 chrX 157741476 157741580 -19232560 + Ricksha DNA DNA 1829 1958 -1288 37 0 0 0 chrX 157741580 157741617 -19232523 + AT_rich Low_complexity Low_complexity 1 37 0 715 65 37 0 chrX 157741618 157741725 -19232415 - L1MA2 LINE L1 0 6304 6194 2147 144 94 5 chrX 157741737 157742132 -19232008 - MSTB1 LTR MaLR -2 430 1 5640 189 39 8 chrX 157742135 157742250 -19231890 - L1PB4 LINE L1 -1752 5354 5244 2379 99 0 0 chrX 157742250 157742554 -19231586 - AluSx SINE Alu -8 304 1 5640 189 39 8 chrX 157742554 157742580 -19231560 - L1PB4 LINE L1 -1862 5244 5220 459 0 0 0 chrX 157742580 157742631 -19231509 + (TG)n Simple_repeat Simple_repeat 2 52 0 5640 189 39 8 chrX 157742631 157743907 -19230233 - L1PB4 LINE L1 -1886 5220 3893 723 236 11 11 chrX 157743914 157744105 -19230035 - L1PB4 LINE L1 -6830 200 10 380 384 35 6 chrX 157744274 157744446 -19229694 + MER5B DNA MER1_type 1 177 -1 1109 15 15 0 chrX 157744742 157744875 -19229265 + L1PA4 LINE L1 6021 6155 0 21 0 0 0 chrX 157744875 157744896 -19229244 + AT_rich Low_complexity Low_complexity 1 21 0 240 360 206 0 chrX 157745342 157745478 -19228662 + MIR3 SINE MIR 44 207 -1 1784 161 4 4 chrX 157746188 157746467 -19227673 + AluJb SINE Alu 1 279 -33 262 261 188 51 chrX 157746818 157746956 -19227184 + MIR3 SINE MIR 22 178 -30 454 282 31 55 chrX 157747035 157747198 -19226942 + MIR SINE MIR 20 178 -84 2111 139 73 14 chrX 157747220 157747564 -19226576 - THE1B LTR MaLR 0 364 1 10371 81 79 0 chrX 157747564 157749028 -19225112 - THE1B-int LTR MaLR 0 1580 1 2168 122 76 15 chrX 157749028 157749371 -19224769 - THE1B LTR MaLR 0 364 1 771 143 0 0 chrX 157749555 157749667 -19224473 + AluSg/x SINE Alu 183 294 -18 476 222 136 23 chrX 157749843 157750019 -19224121 - L2 LINE L2 -6 3307 3112 2344 91 3 0 chrX 157750078 157750376 -19223764 + AluSp SINE Alu 1 299 -14 23 0 0 0 chrX 157750413 157750436 -19223704 + AT_rich Low_complexity Low_complexity 1 23 0 6350 145 12 9 chrX 157750443 157752358 -19221782 - L1MA5A LINE L1 -5 6292 4369 2014 136 41 0 chrX 157752358 157752653 -19221487 - AluSg SINE Alu -3 307 1 6350 145 12 9 chrX 157752653 157752665 -19221475 - L1MA5A LINE L1 -1928 4369 4359 2774 13 0 0 chrX 157752713 157753017 -19221123 + AluYa5 SINE Alu 1 304 -7 431 47 0 16 chrX 157753017 157753076 -19221064 - L1PA16 LINE L1 -10 6156 6099 4254 124 15 4 chrX 157753077 157753398 -19220742 - L1PA16 LINE L1 -112 6054 5738 2201 129 0 0 chrX 157753398 157753701 -19220439 - AluSx SINE Alu -9 303 1 4254 124 15 4 chrX 157753701 157754103 -19220037 - L1PA16 LINE L1 -428 5738 5323 5305 94 11 1 chrX 157754103 157754845 -19219295 - L1PA11 LINE L1 -2 6172 5424 2473 120 11 0 chrX 157754845 157755305 -19218835 + L1PA11 LINE L1 4969 5431 -737 737 176 17 6 chrX 157755310 157755504 -19218636 - L1P LINE L1 -842 5304 5103 2465 104 28 6 chrX 157755515 157755871 -19218269 - THE1B LTR MaLR 0 364 1 10040 107 8 60 chrX 157755871 157757538 -19216602 - THE1B-int LTR MaLR 0 1580 1 2239 145 34 0 chrX 157757538 157757890 -19216250 - THE1B LTR MaLR 0 364 1 9454 219 26 31 chrX 157757892 157759911 -19214229 - L1 LINE L1 -1052 5094 3066 2154 150 111 5 chrX 157759911 157760298 -19213842 + MSTA LTR MaLR 1 428 0 9454 219 26 31 chrX 157760298 157760359 -19213781 - L1 LINE L1 -3080 3066 3006 2229 113 3 0 chrX 157760359 157760668 -19213472 - AluSx SINE Alu -2 310 1 9454 219 26 31 chrX 157760668 157761299 -19212841 - L1 LINE L1 -3140 3006 2396 503 97 0 0 chrX 157761301 157761373 -19212767 - MSTB LTR MaLR 0 426 355 2009 128 4 0 chrX 157763095 157763369 -19210771 - AluSx SINE Alu -15 297 23 4672 204 70 19 chrX 157763369 157764798 -19209342 - L1 LINE L1 -2358 4430 2929 5439 169 12 7 chrX 157764814 157766787 -19207353 - L1MA3 LINE L1 -1 7723 5740 1901 30 9 13 chrX 157766788 157767020 -19207120 - AluY SINE Alu -12 299 69 7318 198 43 8 chrX 157767020 157768883 -19205257 - L1MA3 LINE L1 -2188 5377 3472 613 120 0 34 chrX 157768896 157769013 -19205127 + (TTCTCC)n Simple_repeat Simple_repeat 6 118 0 9861 177 36 27 chrX 157769014 157770318 -19203822 - L1MA3 LINE L1 -4068 3497 2206 1622 195 0 11 chrX 157770318 157770595 -19203545 + AluJo SINE Alu 1 274 -38 9861 177 36 27 chrX 157770595 157772071 -19202069 - L1MA3 LINE L1 -5359 2206 16 5806 178 23 46 chrX 157772084 157773885 -19200255 - L1 LINE L1 -3849 2939 1150 323 292 77 24 chrX 157773888 157774056 -19200084 - L2 LINE L2 -957 2357 2181 192 77 0 0 chrX 157774088 157774114 -19200026 + (TG)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chrX 157774340 157774367 -19199773 + AT_rich Low_complexity Low_complexity 1 27 0 2142 221 60 44 chrX 157774370 157774564 -19199576 - L1ME1 LINE L1 -28 6138 5948 2199 55 0 18 chrX 157774564 157774837 -19199303 - AluY SINE Alu -9 302 35 2142 221 60 44 chrX 157774837 157775298 -19198842 - L1ME1 LINE L1 -218 5948 5473 248 72 0 145 chrX 157775305 157775374 -19198766 + L1MA7 LINE L1 6229 6287 -4 936 188 55 52 chrX 157775637 157775909 -19198231 - L1ME1 LINE L1 -1134 5012 4740 2264 93 0 3 chrX 157775909 157776199 -19197941 - AluSc SINE Alu -20 289 1 192 97 0 0 chrX 157776207 157776238 -19197902 + (TTTTTA)n Simple_repeat Simple_repeat 4 34 0 37124 77 6 11 chrX 157776242 157782410 -19191730 - L1PA6 LINE L1 -6 6148 11 4027 130 15 2 chrX 157782456 157783715 -19190425 + L1PA13 LINE L1 4617 5885 -278 582 242 40 46 chrX 157783722 157783785 -19190355 + LTR40b LTR ERVL 20 82 -380 2327 104 3 0 chrX 157783785 157784083 -19190057 - AluSp SINE Alu -14 299 1 582 242 40 46 chrX 157784083 157784363 -19189777 + LTR40b LTR ERVL 82 462 0 451 291 81 12 chrX 157784691 157784863 -19189277 + HERVL40 LTR ERVL 1032 1215 -4315 1422 234 111 6 chrX 157785206 157785701 -19188439 + L1M4 LINE L1 3999 4545 -1601 300 271 73 0 chrX 157785711 157785807 -19188333 - MLT1E LTR MaLR 0 593 491 234 0 0 0 chrX 157785811 157785837 -19188303 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2213 80 0 7 chrX 157785839 157786125 -19188015 - AluSx SINE Alu -28 284 1 995 246 25 50 chrX 157786133 157786191 -19187949 - MLT2E LTR ERVL -192 436 378 1272 150 10 62 chrX 157786191 157786497 -19187643 + L1MA9 LINE L1 6023 6312 0 995 246 25 50 chrX 157786497 157786714 -19187426 - MLT2E LTR ERVL -250 378 168 846 264 105 48 chrX 157786714 157787265 -19186875 + MLT1G1 LTR MaLR 1 551 -4 4008 59 96 16 chrX 157787391 157787951 -19186189 + LTR14B LTR ERVK 4 608 0 263 113 113 19 chrX 157788249 157788302 -19185838 + MLT1I LTR MaLR 319 376 -33 727 227 45 5 chrX 157788338 157788558 -19185582 + L1MC5 LINE L1 7023 7249 -728 1106 200 60 104 chrX 157788562 157789270 -19184870 + L1MC5 LINE L1 7244 7827 -134 723 271 4 65 chrX 157789274 157789521 -19184619 - L2 LINE L2 -859 2455 2224 997 269 28 11 chrX 157789658 157790011 -19184129 + L1MC4a LINE L1 5541 5899 -1909 217 250 0 0 chrX 157790044 157790088 -19184052 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 744 293 57 0 chrX 157790329 157790541 -19183599 + MIR SINE MIR 13 236 -26 2269 79 28 3 chrX 157790668 157790958 -19183182 - AluSq SINE Alu -16 297 1 749 337 118 18 chrX 157791213 157791655 -19182485 - L3 LINE CR1 -7 1570 1085 550 231 105 61 chrX 157792292 157792521 -19181619 + L2 LINE L2 2035 2273 -1041 354 263 82 5 chrX 157792789 157792983 -19181157 - L1M4 LINE L1 -2382 3764 3556 557 292 21 7 chrX 157793180 157793464 -19180676 - L1M4 LINE L1 -3582 2564 2277 1509 222 50 18 chrX 157793471 157793669 -19180471 + MER97c DNA MER1_type? 182 372 -718 2780 124 24 2 chrX 157793669 157794088 -19180052 + MSTA LTR MaLR 1 428 0 1509 222 50 18 chrX 157794088 157794285 -19179855 + MER97c DNA MER1_type? 372 590 -500 5553 99 10 8 chrX 157794285 157795104 -19179036 + L1PB3 LINE L1 5335 6154 0 857 204 47 44 chrX 157795114 157795388 -19178752 + MER97a DNA MER1_type? 596 870 -24 2897 176 58 11 chrX 157795407 157795941 -19178199 - MER21B LTR ERV1 -30 833 275 1254 209 21 86 chrX 157795941 157795994 -19178146 - L1ME LINE L1 -353 5813 5758 2167 108 10 0 chrX 157795994 157796289 -19177851 - AluSx SINE Alu -14 298 1 1254 209 21 86 chrX 157796289 157796479 -19177661 - L1ME LINE L1 -408 5758 5601 2316 112 0 0 chrX 157796479 157796792 -19177348 + AluSq SINE Alu 1 313 0 1254 209 21 86 chrX 157796792 157796929 -19177211 - L1ME LINE L1 -565 5601 5457 1900 205 101 19 chrX 157797138 157797651 -19176489 - L1ME LINE L1 -850 5296 4742 4731 229 81 40 chrX 157798597 157799292 -19174848 - L1ME LINE L1 -1350 4796 4131 2169 101 40 0 chrX 157799292 157799618 -19174522 - L1MA1 LINE L1 -6 6296 5958 4731 229 81 40 chrX 157799618 157800731 -19173409 - L1ME LINE L1 -2015 4131 2914 300 122 0 20 chrX 157800921 157800970 -19173170 - L1PB4 LINE L1 -30 6126 6079 825 173 0 0 chrX 157800988 157801115 -19173025 - FLAM_C SINE Alu -6 127 1 3129 204 46 1 chrX 157801116 157801862 -19172278 - L1ME LINE L1 -3171 2975 2197 1161 330 61 79 chrX 157802319 157803246 -19170894 - L2 LINE L2 -50 3222 2280 2468 54 0 32 chrX 157803246 157803561 -19170579 + AluY SINE Alu 1 305 -6 7446 12 0 1 chrX 157803561 157804430 -19169710 + L1PA3 LINE L1 5307 6155 0 1161 330 61 79 chrX 157804430 157804806 -19169334 - L2 LINE L2 -990 2282 1945 473 271 153 31 chrX 157804873 157805102 -19169038 + MIR SINE MIR 5 261 -1 215 255 0 0 chrX 157805409 157805460 -19168680 - L2 LINE L2 -2885 429 379 201 256 0 0 chrX 157805566 157805605 -19168535 + L2 LINE L2 3265 3303 -10 2466 279 90 9 chrX 157805666 157806602 -19167538 - L2 LINE L2 -157 3156 1990 637 265 45 83 chrX 157806773 157807086 -19167054 + LTR16C LTR ERVL 160 460 -31 592 225 44 12 chrX 157807106 157807266 -19166874 - L2 LINE L2 -1323 1991 1827 618 263 189 19 chrX 157807268 157807580 -19166560 - L2 LINE L2 -1901 1413 1049 340 281 22 0 chrX 157807672 157807761 -19166379 + MER94 DNA DNA 44 134 0 228 254 0 36 chrX 157807797 157807852 -19166288 + MIR SINE MIR 13 65 -197 24 85 0 0 chrX 157808621 157808680 -19165460 + AT_rich Low_complexity Low_complexity 1 59 0 245 152 0 22 chrX 157809553 157809599 -19164541 - MIR SINE MIR -110 152 108 521 315 1 0 chrX 157809619 157809767 -19164373 + MIR SINE MIR 2 151 -57 380 202 75 11 chrX 157809772 157809866 -19164274 - MER5B DNA MER1_type -6 172 73 262 121 17 17 chrX 157810083 157810141 -19163999 + CT-rich Low_complexity Low_complexity 1 58 0 494 277 20 40 chrX 157812342 157812490 -19161650 + MIR3 SINE MIR 33 177 -31 183 218 0 73 chrX 157812458 157812513 -19161627 + L3 LINE CR1 1519 1569 -8 * 1069 263 22 0 chrX 157813033 157813265 -19160875 + MIR SINE MIR 22 258 -4 890 257 0 29 chrX 157815140 157815346 -19158794 + MIR3 SINE MIR 5 204 -4 188 182 23 0 chrX 157815869 157815913 -19158227 + GA-rich Low_complexity Low_complexity 4 48 0 306 0 0 0 chrX 157817870 157817904 -19156236 + (TA)n Simple_repeat Simple_repeat 2 35 0 317 266 0 89 chrX 157819136 157819260 -19154880 + MIR3 SINE MIR 64 176 -32 252 0 0 0 chrX 157820555 157820583 -19153557 + (GA)n Simple_repeat Simple_repeat 1 28 0 446 331 86 0 chrX 157821695 157821846 -19152294 + MIR3 SINE MIR 41 204 -4 22 0 0 0 chrX 157822892 157822914 -19151226 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chrX 157823271 157823307 -19150833 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 867 195 0 4 chrX 157823426 157823700 -19150440 + CT-rich Low_complexity Low_complexity 1 272 0 236 189 19 19 chrX 157824376 157824429 -19149711 - L2 LINE L2 0 3313 3261 192 283 81 30 chrX 157824618 157824717 -19149423 + MIR SINE MIR 42 145 -63 530 279 68 26 chrX 157824718 157824908 -19149232 + MIR3 SINE MIR 2 199 -9 195 246 0 0 chrX 157825034 157825091 -19149049 + (TG)n Simple_repeat Simple_repeat 2 58 0 301 204 0 0 chrX 157825188 157825242 -19148898 - L2 LINE L2 -3 3310 3257 182 288 15 15 chrX 157825266 157825332 -19148808 + MIR SINE MIR 50 115 -147 239 278 261 0 chrX 157825606 157825721 -19148419 - L2 LINE L2 0 3272 3128 * 1000 227 12 49 chrX 157825715 157825962 -19148178 - MIR SINE MIR -24 238 1 2072 163 31 3 chrX 157826023 157826378 -19147762 + MLT1A1 LTR MaLR 1 365 0 356 278 74 137 chrX 157826380 157826679 -19147461 + L2 LINE L2 2993 3272 0 404 219 9 57 chrX 157826949 157827054 -19147086 - MIR3 SINE MIR -94 114 15 3482 109 10 23 chrX 157827975 157828551 -19145589 - L1PA16 LINE L1 -84 6082 5448 319 284 3 14 chrX 157829001 157829080 -19145060 - MIR SINE MIR -123 85 5 3232 97 16 16 chrX 157829356 157829842 -19144298 + L1PA16 LINE L1 5353 5838 -328 1926 165 0 23 chrX 157830313 157830658 -19143482 + MER1B DNA MER1_type 1 337 0 447 229 76 17 chrX 157830857 157830975 -19143165 + MIR SINE MIR 28 152 -110 273 284 12 25 chrX 157831242 157831323 -19142817 - L2 LINE L2 -191 3081 3002 239 203 152 51 chrX 157831555 157831634 -19142506 - L2 LINE L2 0 3272 3186 1548 117 164 8 chrX 157831888 157832144 -19141996 + AluSg1 SINE Alu 1 296 -13 267 258 15 0 chrX 157832863 157832929 -19141211 + MIR SINE MIR 73 139 -69 211 222 0 0 chrX 157833029 157833074 -19141066 + L2 LINE L2 3269 3313 0 209 348 0 0 chrX 157833221 157833290 -19140850 - L2 LINE L2 -697 2617 2549 446 316 13 32 chrX 157833421 157833576 -19140564 - MER5A DNA MER1_type -2 187 36 347 238 12 0 chrX 157833657 157833737 -19140403 + L2 LINE L2 2234 2314 -1000 1449 271 35 28 chrX 157833768 157834319 -19139821 - L2 LINE L2 -226 3087 2529 719 286 97 4 chrX 157835577 157835804 -19138336 - MIR SINE MIR -12 250 3 4818 191 29 15 chrX 157836248 157838134 -19136006 + L1MB7 LINE L1 4277 6182 -2 1065 264 92 9 chrX 157838210 157838678 -19135462 - L1MC/D LINE L1 -778 5405 5254 351 278 28 81 chrX 157839028 157839225 -19134915 - HAL1 LINE L1 -1055 1452 1269 558 0 0 0 chrX 157839225 157839287 -19134853 + (TTTTA)n Simple_repeat Simple_repeat 3 64 0 351 278 28 81 chrX 157839287 157839337 -19134803 - HAL1 LINE L1 -1238 1269 1218 531 316 49 84 chrX 157839531 157839997 -19134143 + LTR67 LTR ERVL 2 451 -106 1651 271 80 13 chrX 157840005 157840540 -19133600 + L2 LINE L2 822 1392 -1922 1849 262 42 62 chrX 157840543 157840777 -19133363 + L2 LINE L2 1876 2113 -1201 2688 82 25 0 chrX 157840777 157841144 -19132996 - L1PA16 LINE L1 -9 6157 5782 1849 262 42 62 chrX 157841144 157841501 -19132639 + L2 LINE L2 2113 2455 -859 1121 335 45 12 chrX 157841501 157842014 -19132126 + L2 LINE L2 2770 3301 -12 580 230 223 0 chrX 157843141 157843406 -19130734 + MER5C DNA MER1_type 1 324 0 236 337 171 15 chrX 157843837 157844042 -19130098 + L3 LINE CR1 1336 1572 -5 536 270 86 0 chrX 157845417 157845580 -19128560 - MIR SINE MIR -2 260 84 496 128 108 0 chrX 157847292 157847394 -19126746 - L1MB4 LINE L1 -255 5925 5813 347 248 83 33 chrX 157847626 157847747 -19126393 - MIR SINE MIR -46 216 90 11502 180 18 2 chrX 157847938 157850167 -19123973 - L1PA12 LINE L1 -2701 4883 2618 5051 51 8 7 chrX 157850173 157851199 -19122941 - MER11A LTR ERVK 0 1266 1 4076 244 29 43 chrX 157851201 157852785 -19121355 - L1PA12 LINE L1 -4960 2624 7 1000 261 38 28 chrX 157852789 157853214 -19120926 - L1M4 LINE L1 -775 5371 4943 625 325 66 66 chrX 157853300 157853905 -19120235 + L2 LINE L2 2648 3252 -20 400 88 4 0 chrX 157853905 157853963 -19120177 + L1PA8A LINE L1 5711 5770 -361 * 3751 230 42 19 chrX 157853962 157856489 -19117651 + L1MCa LINE L1 831 3566 -2860 7163 123 50 48 chrX 157856489 157857753 -19116387 + Tigger1 DNA MER2_type 1 1266 -1152 436 192 8 8 chrX 157857778 157857898 -19116242 + (TA)n Simple_repeat Simple_repeat 1 120 0 15141 161 27 10 chrX 157857909 157858881 -19115259 - L1MA3 LINE L1 -11 7713 6759 2949 137 40 4 chrX 157858881 157859377 -19114763 - MER75 DNA T2_type 0 514 1 15141 161 27 10 chrX 157859377 157862385 -19111755 - L1MA3 LINE L1 -965 6759 3661 37267 80 7 11 chrX 157862388 157868406 -19105734 + L1PA6 LINE L1 145 6132 -22 21412 141 30 18 chrX 157868414 157868682 -19105458 - L1MA3 LINE L1 -3892 3673 3410 2077 125 7 0 chrX 157868682 157868971 -19105169 - AluSx SINE Alu -21 291 1 21412 141 30 18 chrX 157868971 157872311 -19101829 - L1MA3 LINE L1 -4155 3410 22 31 26 0 0 chrX 157872793 157872831 -19101309 + AT_rich Low_complexity Low_complexity 1 38 0 372 247 172 48 chrX 157873005 157873191 -19100949 + L1M4b LINE L1 21 229 -6630 3965 55 2 0 chrX 157873314 157873807 -19100333 + L1PA8 LINE L1 5662 6155 -17 2011 112 31 0 chrX 157874044 157874200 -19099940 - AluSx SINE Alu -16 296 125 279 0 0 0 chrX 157874200 157874231 -19099909 + (TA)n Simple_repeat Simple_repeat 2 32 0 2011 112 31 0 chrX 157874231 157874361 -19099779 - AluSx SINE Alu -187 125 1 272 282 0 13 chrX 157874383 157874461 -19099679 + L1M4b LINE L1 1111 1187 -5668 764 299 116 8 chrX 157874519 157875054 -19099086 + L1M4b LINE L1 1188 1780 -5075 * 20838 153 40 14 chrX 157875046 157878008 -19096132 + L1MA2 LINE L1 8 2892 -4831 881 54 0 0 chrX 157878008 157878119 -19096021 + L1PA8 LINE L1 6061 6171 -1 20838 153 40 14 chrX 157878119 157882254 -19091886 + L1MA2 LINE L1 2892 7288 -435 1834 129 40 20 chrX 157882257 157882606 -19091534 + L1MA2 LINE L1 7368 7723 0 1285 252 51 13 chrX 157882617 157883070 -19091070 + L1M4b LINE L1 2025 2494 -4644 3185 228 82 14 chrX 157883077 157884299 -19089841 + L1M4b LINE L1 2761 4031 -2926 4031 256 45 24 chrX 157884304 157887310 -19086830 - L1MCc LINE L1 -2584 4357 1121 20687 18 3 0 chrX 157887381 157890592 -19083548 + L1HS LINE L1 2936 6155 0 2768 161 34 9 chrX 157890595 157891124 -19083016 - L1MB5 LINE L1 -343 5831 5290 276 152 3 0 chrX 157891152 157891220 -19082920 - L1MB5 LINE L1 -840 5306 5238 254 390 15 15 chrX 157891259 157891459 -19082681 - L1MCc LINE L1 -5406 1017 818 235 235 0 0 chrX 157891972 157892023 -19082117 - L1MCc LINE L1 -6270 153 103 * 913 244 18 25 chrX 157892015 157892298 -19081842 - L1M4 LINE L1 -1871 4275 3995 298 325 92 42 chrX 157892578 157892818 -19081322 + MLT1K LTR MaLR 179 430 -158 348 244 55 101 chrX 157892917 157893134 -19081006 + MLT1J LTR MaLR 110 316 -195 241 235 47 12 chrX 157893281 157893366 -19080774 + MLT1K LTR MaLR 501 588 0 276 81 0 0 chrX 157893504 157893541 -19080599 - MLT2B1 LTR ERVL 0 515 479 273 29 0 0 chrX 157893545 157893579 -19080561 + (CA)n Simple_repeat Simple_repeat 2 35 0 310 157 0 0 chrX 157893598 157893649 -19080491 - MIR SINE MIR -36 226 176 261 211 0 0 chrX 157893664 157893721 -19080419 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 2106 200 65 0 chrX 157893737 157894152 -19079988 - MLT2B1 LTR ERVL -78 442 1 522 222 0 28 chrX 157894153 157894261 -19079879 + MIR SINE MIR 142 246 -16 198 0 0 0 chrX 157894934 157894956 -19079184 + (TC)n Simple_repeat Simple_repeat 2 23 0 266 125 21 0 chrX 157894965 157895013 -19079127 + (TG)n Simple_repeat Simple_repeat 2 50 0 2206 269 88 36 chrX 157895141 157896227 -19077913 + L1MEc LINE L1 753 1781 -4434 3597 123 2 17 chrX 157896227 157896762 -19077378 + MER1A DNA MER1_type 1 527 0 2206 269 88 36 chrX 157896762 157897108 -19077032 + L1MEc LINE L1 1781 2107 -4108 1927 155 7 13 chrX 157897108 157897411 -19076729 + AluJo SINE Alu 1 301 -11 2206 269 88 36 chrX 157897411 157898590 -19075550 + L1MEc LINE L1 2107 3648 -2567 1363 252 56 9 chrX 157898591 157899036 -19075104 + L1M4 LINE L1 4566 5031 -1115 909 145 24 6 chrX 157899032 157899198 -19074942 - L1MA4 LINE L1 -262 6038 5870 * 531 176 12 0 chrX 157899221 157899306 -19074834 + FLAM_A SINE Alu 34 119 -23 1141 189 20 0 chrX 157899306 157899555 -19074585 + L1MA4 LINE L1 6038 6291 -9 3515 119 4 0 chrX 157899563 157900074 -19074066 - MER75 DNA T2_type -1 513 1 526 234 57 25 chrX 157900097 157900341 -19073799 + L1M4 LINE L1 5022 5273 -873 2850 178 8 0 chrX 157900371 157900882 -19073258 - L1PA11 LINE L1 -3507 2639 2125 4439 194 45 2 chrX 157900885 157901838 -19072302 + L1PA11 LINE L1 2636 3629 -2517 5833 112 26 1 chrX 157901857 157902294 -19071846 + L1PA11 LINE L1 4906 5331 -843 1539 89 106 20 chrX 157902294 157902532 -19071608 + L1PA10 LINE L1 5901 6167 -1 5833 112 26 1 chrX 157902532 157903271 -19070869 + L1PA11 LINE L1 5331 6106 -68 403 59 0 0 chrX 157903269 157903320 -19070820 - L1PA8 LINE L1 -112 6060 6010 * 1142 313 54 41 chrX 157903325 157903810 -19070330 + MLT1K LTR MaLR 92 582 -6 3233 214 94 52 chrX 157904833 157905139 -19069001 + L1MDa LINE L1 1007 1299 -5241 2095 106 0 27 chrX 157905139 157905440 -19068700 + AluSc SINE Alu 1 293 -16 2687 82 6 0 chrX 157905440 157905806 -19068334 + L1PA13 LINE L1 5796 6163 0 3233 214 94 52 chrX 157905806 157906735 -19067405 + L1MDa LINE L1 1298 2295 -4245 1006 304 132 25 chrX 157906813 157907539 -19066601 + L2 LINE L2 1492 2295 -1019 5911 125 29 2 chrX 157907548 157908477 -19065663 - Tigger1 DNA MER2_type 0 2418 1465 1221 197 0 5 chrX 157908477 157908680 -19065460 + AluJb SINE Alu 87 288 -24 9345 130 14 11 chrX 157908738 157909748 -19064392 - Tigger1 DNA MER2_type -961 1457 440 2107 123 5 59 chrX 157909748 157910123 -19064017 - THE1A LTR MaLR 0 355 1 9345 130 14 11 chrX 157910123 157910565 -19063575 - Tigger1 DNA MER2_type -1978 440 1 331 325 80 101 chrX 157910566 157911021 -19063119 + L2 LINE L2 2304 2767 -546 414 0 0 0 chrX 157911021 157911067 -19063073 + (CA)n Simple_repeat Simple_repeat 2 47 0 331 325 80 101 chrX 157911067 157911568 -19062572 + L2 LINE L2 2767 3239 -74 1691 175 29 63 chrX 157911571 157911949 -19062191 + MLT1A1 LTR MaLR 1 365 0 27 0 0 0 chrX 157911982 157912009 -19062131 + AT_rich Low_complexity Low_complexity 1 27 0 1833 83 0 0 chrX 157912013 157912255 -19061885 - L1PA6 LINE L1 -10 6144 5903 302 67 22 0 chrX 157912272 157912317 -19061823 + L2 LINE L2 3264 3309 -4 1122 157 170 62 chrX 157914293 157914617 -19059523 + MLT1A1 LTR MaLR 3 361 -4 415 261 97 67 chrX 157914656 157914821 -19059319 - MIR3 SINE MIR -5 203 34 191 407 93 25 chrX 157914995 157915317 -19058823 + L3 LINE CR1 32 375 -1202 563 333 117 63 chrX 157915998 157916692 -19057448 + L3 LINE CR1 371 1101 -476 435 281 15 44 chrX 157916706 157916841 -19057299 + L3 LINE CR1 1375 1505 -72 7665 27 0 0 chrX 157917987 157919007 -19055133 - L1PA3 LINE L1 -2 6153 5134 4353 38 0 0 chrX 157919007 157919539 -19054601 + L1PA3 LINE L1 4594 5125 -1021 300 102 0 0 chrX 157919602 157919651 -19054489 + (CATA)n Simple_repeat Simple_repeat 2 50 0 228 237 207 46 chrX 157920375 157920533 -19053607 + MIR SINE MIR 51 220 -42 26 64 0 0 chrX 157920554 157920601 -19053539 + AT_rich Low_complexity Low_complexity 1 47 0 413 301 35 28 chrX 157920608 157920751 -19053389 - MIR3 SINE MIR -49 159 16 735 268 58 21 chrX 157920993 157921236 -19052904 + MIR SINE MIR 11 262 0 423 283 14 7 chrX 157921436 157921581 -19052559 - L1M4 LINE L1 -2161 3985 3840 23 0 0 0 chrX 157921898 157921921 -19052219 + AT_rich Low_complexity Low_complexity 1 23 0 2751 229 66 18 chrX 157922622 157923571 -19050569 - L1ME3 LINE L1 0 6162 5164 2025 314 100 51 chrX 157923577 157925273 -19048867 + L2 LINE L2 1340 3121 -192 961 267 80 79 chrX 157925591 157927008 -19047132 - L1ME3A LINE L1 -256 5914 4490 923 78 0 8 chrX 157927121 157927249 -19046891 + L1MA2 LINE L1 6178 6304 0 893 234 22 5 chrX 157927418 157927602 -19046538 - MER5A DNA MER1_type -1 188 2 248 254 66 16 chrX 157927799 157927921 -19046219 - HAL1b LINE L1 -531 817 690 216 0 0 0 chrX 157928509 157928533 -19045607 + (T)n Simple_repeat Simple_repeat 1 24 0 418 247 22 0 chrX 157928657 157928746 -19045394 + L1PA15-16 LINE L1 1461 1551 -5298 11315 229 23 14 chrX 157928754 157931771 -19042369 + L1PA15-16 LINE L1 1348 4469 -2380 2289 78 0 3 chrX 157931771 157932126 -19042014 + AluY SINE Alu 1 354 0 11315 229 23 14 chrX 157932126 157933146 -19040994 + L1PA15-16 LINE L1 4469 5478 -1371 11904 121 17 51 chrX 157933152 157935494 -19038646 + L1PB4 LINE L1 5 2348 -4113 5526 138 33 9 chrX 157935488 157936481 -19037659 + L1PB4 LINE L1 5077 6117 -354 * 378 0 0 0 chrX 157936481 157936523 -19037617 + (CA)n Simple_repeat Simple_repeat 2 43 0 5526 138 33 9 chrX 157936523 157936880 -19037260 + L1PB4 LINE L1 6117 6464 -7 449 220 73 23 chrX 157936883 157937060 -19037080 + L1MDa LINE L1 2465 2650 -3890 1289 246 64 15 chrX 157937064 157937393 -19036747 + MER21B LTR ERV1 508 852 -11 4632 177 38 39 chrX 157937406 157938979 -19035161 + L1MA2 LINE L1 4600 6167 -137 2237 111 124 21 chrX 157938979 157939365 -19034775 + MSTA LTR MaLR 1 426 -2 4632 177 38 39 chrX 157939365 157939503 -19034637 + L1MA2 LINE L1 6167 6304 0 1704 200 91 18 chrX 157939514 157939851 -19034289 + L1M1 LINE L1 5106 5417 -885 1848 143 61 0 chrX 157939851 157940131 -19034009 + AluSx SINE Alu 1 297 -15 1704 200 91 18 chrX 157940131 157940389 -19033751 + L1M1 LINE L1 5417 5733 -569 475 297 0 0 chrX 157940587 157940732 -19033408 + L1MDa LINE L1 2996 3140 -3400 11211 89 10 1 chrX 157940886 157942462 -19031678 - L1PA7 LINE L1 -1442 4704 3115 6833 60 10 0 chrX 157942462 157943901 -19030239 + L1PA7 LINE L1 4705 6153 -1 770 220 16 0 chrX 157943929 157944120 -19030020 + L1 LINE L1 2423 2616 -3530 4965 199 22 23 chrX 157944132 157945284 -19028856 + L1 LINE L1 3869 5019 -1127 9936 180 26 7 chrX 157945293 157947029 -19027111 + L1MA10 LINE L1 13 1782 -5783 7333 214 59 5 chrX 157947027 157949119 -19025021 + L1MA10 LINE L1 2849 5160 -2405 * 5290 56 39 0 chrX 157949119 157949814 -19024326 + LTR30 LTR ERV1 1 722 0 7333 214 59 5 chrX 157949814 157950722 -19023418 + L1MA10 LINE L1 5160 6018 -1547 496 136 11 34 chrX 157950722 157950810 -19023330 + Tigger2 DNA MER2_type 677 762 -1956 1457 148 33 0 chrX 157950863 157951106 -19023034 + Tigger2 DNA MER2_type 2468 2718 0 3988 148 30 0 chrX 157951106 157951783 -19022357 + L1MA10 LINE L1 6686 7382 -226 1049 140 22 53 chrX 157951795 157952023 -19022117 + L1MA10 LINE L1 7530 7750 -3 1125 301 106 14 chrX 157952024 157952460 -19021680 - LTR33 LTR ERVL -44 477 2 497 284 139 26 chrX 157952460 157952812 -19021328 + L1ME LINE L1 4514 4905 -1241 276 30 0 0 chrX 157952832 157952865 -19021275 + (TA)n Simple_repeat Simple_repeat 1 33 0 716 172 0 0 chrX 157952870 157952986 -19021154 - FLAM_C SINE Alu -27 116 1 301 228 23 122 chrX 157953038 157953270 -19020870 + L1ME LINE L1 5341 5556 -606 1501 188 186 16 chrX 157953272 157953708 -19020432 - LTR50 LTR ERVL 0 795 286 457 241 99 7 chrX 157953714 157953855 -19020285 - LTR50 LTR ERVL -641 154 1 31 0 0 24 chrX 157953939 157953956 -19020184 + AT_rich Low_complexity Low_complexity 1 17 -24 2696 16 0 13 chrX 157953956 157954274 -19019866 - L1PA3 LINE L1 0 6155 5842 31 0 0 24 chrX 157954274 157954298 -19019842 + AT_rich Low_complexity Low_complexity 17 41 0 310 119 15 15 chrX 157954529 157954596 -19019544 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1365 280 45 22 chrX 157954646 157955168 -19018972 - ERVL LTR ERVL -343 5311 4746 371 255 20 0 chrX 157955214 157955312 -19018828 - ERVL LTR ERVL -1041 4613 4514 2701 62 3 0 chrX 157955316 157955694 -19018446 - L1PA7 LINE L1 -542 5612 5235 * 4307 64 2 0 chrX 157955693 157956238 -19017902 + L1PA7 LINE L1 5585 6130 -24 248 69 35 35 chrX 157956250 157956308 -19017832 + (TA)n Simple_repeat Simple_repeat 1 58 0 1623 95 9 0 chrX 157956312 157956534 -19017606 + MER41-int LTR ERV1 5032 5255 -691 1141 314 37 0 chrX 157956561 157956914 -19017226 - ERVL LTR ERVL -1078 4686 4321 1571 80 10 0 chrX 157957058 157957258 -19016882 - AluSc SINE Alu -16 293 92 1712 284 35 8 chrX 157957258 157957747 -19016393 - ERVL LTR ERVL -3462 2302 1801 1119 45 0 0 chrX 157957759 157957891 -19016249 - AluY SINE Alu -179 132 1 1551 306 32 37 chrX 157957892 157958295 -19015845 - ERVL LTR ERVL -3952 1812 1408 1824 246 71 15 chrX 157958295 157958815 -19015325 + MLT1H LTR MaLR 1 549 0 1551 306 32 37 chrX 157958815 157958891 -19015249 - ERVL LTR ERVL -4356 1408 1333 438 20 0 0 chrX 157958891 157958942 -19015198 + (TG)n Simple_repeat Simple_repeat 1 51 0 1551 306 32 37 chrX 157958942 157959182 -19014958 - ERVL LTR ERVL -4431 1333 1096 1345 96 0 0 chrX 157959183 157959381 -19014759 + L1MA2 LINE L1 6107 6304 0 3382 240 32 22 chrX 157959383 157959515 -19014625 + L1M1 LINE L1 2292 2421 -5144 4368 124 13 8 chrX 157959515 157960223 -19013917 + L1PA16 LINE L1 5456 6166 0 3382 240 32 22 chrX 157960223 157961154 -19012986 + L1M1 LINE L1 2421 3366 -4199 1846 132 105 93 chrX 157961162 157961412 -19012728 + L1MA8 LINE L1 5023 5269 -1022 6000 43 14 0 chrX 157961412 157962148 -19011992 + L1PA5 LINE L1 5409 6154 0 1846 132 105 93 chrX 157962148 157962477 -19011663 + L1MA8 LINE L1 5269 5608 -683 1724 87 48 1 chrX 157962475 157962865 -19011275 - L1PA10 LINE L1 -622 5509 5108 * 4812 75 17 6 chrX 157962865 157963514 -19010626 + L1PA10 LINE L1 5511 6167 -1 3306 131 38 56 chrX 157963514 157964218 -19009922 + L1MA8 LINE L1 5593 6289 -2 3599 192 60 5 chrX 157964407 157965567 -19008573 + L1MB8 LINE L1 4942 6178 0 737 188 180 19 chrX 157965578 157965946 -19008194 + L1MC5 LINE L1 7408 7913 -48 591 97 29 0 chrX 157965947 157966050 -19008090 + L1MA7 LINE L1 6186 6291 0 343 257 138 9 chrX 157966235 157966344 -19007796 + L2 LINE L2 3190 3312 -1 546 82 33 25 chrX 157966585 157966707 -19007433 + (TAGA)n Simple_repeat Simple_repeat 4 126 0 616 254 22 0 chrX 157967162 157967300 -19006840 - MIR SINE MIR -48 214 74 234 188 10 188 chrX 157967623 157967724 -19006416 + MIR3 SINE MIR 123 205 -3 181 214 18 54 chrX 157969708 157969764 -19004376 - MIR SINE MIR -189 73 20 312 324 21 21 chrX 157970161 157970303 -19003837 + LTR67 LTR ERVL 338 479 -78 235 227 21 85 chrX 157970306 157970325 -19003815 - L1MA9 LINE L1 0 6312 6294 2527 191 30 129 chrX 157970325 157971672 -19002468 - L1ME2 LINE L1 -9 6155 4942 5015 209 30 17 chrX 157971729 157973317 -19000823 + L1MD2 LINE L1 4747 6359 0 462 215 108 25 chrX 157973321 157973479 -19000661 - L1ME2 LINE L1 -1296 4850 4680 451 381 26 13 chrX 157973526 157973833 -19000307 - L1MEc LINE L1 -6028 368 58 442 164 0 0 chrX 157973837 157973910 -19000230 + LTR67 LTR ERVL 485 557 0 267 260 164 0 chrX 157974323 157974396 -18999744 - MER81 DNA DNA -14 100 16 489 267 103 76 chrX 157974521 157974783 -18999357 + LTR16B LTR ERVL 1 269 -195 537 0 41 0 chrX 157974994 157975067 -18999073 + (GA)n Simple_repeat Simple_repeat 1 76 0 252 234 39 13 chrX 157975231 157975308 -18998832 + MLT1K LTR MaLR 509 587 -1 208 289 0 0 chrX 157975867 157975912 -18998228 - L2 LINE L2 -692 2622 2578 951 241 0 14 chrX 157975912 157976124 -18998016 + MER58A DNA MER1_type 1 209 -15 27 62 0 0 chrX 157976433 157976481 -18997659 + AT_rich Low_complexity Low_complexity 1 48 0 808 251 114 5 chrX 157976493 157976704 -18997436 + MIR SINE MIR 29 262 0 259 370 0 0 chrX 157976842 157976934 -18997206 + L2 LINE L2 2919 3010 -262 532 229 9 18 chrX 157976944 157977053 -18997087 + L2 LINE L2 3165 3272 0 551 298 45 98 chrX 157977159 157977518 -18996622 - L2 LINE L2 -9 3263 2924 236 309 66 7 chrX 157978724 157978860 -18995280 + MIR3 SINE MIR 58 201 -7 214 274 95 0 chrX 157980251 157980346 -18993794 - L2 LINE L2 -886 2428 2325 27 29 0 0 chrX 157980476 157980510 -18993630 + AT_rich Low_complexity Low_complexity 1 34 0 3479 173 108 33 chrX 157980687 157981608 -18992532 - L1MB7 LINE L1 -27 6859 5865 9682 194 37 11 chrX 157981608 157984522 -18989618 - L1PA15 LINE L1 0 7603 4617 5097 235 66 21 chrX 157984525 157985934 -18988206 - L1PA15 LINE L1 -3127 4457 2985 4838 246 19 22 chrX 157985916 157987233 -18986907 - L1PA15 LINE L1 -4826 2755 1539 * 5228 211 43 47 chrX 157987234 157987756 -18986384 - L1MB7 LINE L1 -986 5862 5340 583 36 0 24 chrX 157987756 157987840 -18986300 + (TTTC)n Simple_repeat Simple_repeat 1 82 0 1656 178 11 14 chrX 157987840 157988121 -18986019 - AluJo SINE Alu -32 280 1 5228 211 43 47 chrX 157988121 157989146 -18984994 - L1MB7 LINE L1 -1506 5342 4319 1561 242 70 51 chrX 157989142 157990143 -18983997 - L1MB7 LINE L1 -3675 3173 2169 * 551 337 70 23 chrX 157990217 157990603 -18983537 - L1MB7 LINE L1 -5654 1092 689 405 105 0 0 chrX 157990619 157990676 -18983464 - L1MB7 LINE L1 -6783 66 10 2371 220 124 7 chrX 157990684 157991356 -18982784 - MER20B DNA MER1_type -24 759 10 481 276 138 19 chrX 157991492 157991919 -18982221 - L1MEc LINE L1 -2082 4300 3823 1196 153 11 0 chrX 157991933 157992122 -18982018 - Tigger2 DNA MER2_type 0 2718 2528 4103 117 9 27 chrX 157992130 157992460 -18981680 - Tigger2 DNA MER2_type -315 2403 2089 4111 25 0 0 chrX 157992460 157992936 -18981204 - L1PA4 LINE L1 -8 6147 5672 4103 117 9 27 chrX 157992936 157993265 -18980875 - Tigger2 DNA MER2_type -629 2089 1756 1107 138 133 9 chrX 157993303 157993513 -18980627 - MER46A DNA MER2_type 0 236 1 3052 42 10 3 chrX 157993549 157993932 -18980208 - L1P2 LINE L1 -391 5764 5379 3008 26 0 0 chrX 157993932 157994279 -18979861 + L1PA4 LINE L1 5800 6147 -8 251 270 16 16 chrX 157994513 157994576 -18979564 + L3 LINE CR1 322 384 -1193 10788 135 24 11 chrX 157994589 157996326 -18977814 - Tigger2 DNA MER2_type -959 1759 1 7715 236 22 41 chrX 157996329 157998829 -18975311 - L1M4 LINE L1 -4170 2180 -319 3892 155 24 11 chrX 157998829 157999534 -18974606 - L1MA8 LINE L1 -132 6159 -195 2106 238 78 47 chrX 157999534 158000849 -18973291 - L1MEc LINE L1 -3171 3211 1898 731 241 56 9 chrX 158001024 158001256 -18972884 - L1MEc LINE L1 -4551 1833 1591 * 5742 133 30 19 chrX 158001249 158001718 -18972422 - L1MA4A LINE L1 0 6303 5840 2252 93 7 7 chrX 158001718 158002019 -18972121 - AluSx SINE Alu -11 301 1 5742 133 30 19 chrX 158002019 158002660 -18971480 - L1MA4A LINE L1 -463 5840 5182 1459 234 42 22 chrX 158002765 158003311 -18970829 + L1M4 LINE L1 2664 3220 -2926 4050 256 45 24 chrX 158003316 158006322 -18967818 - L1MCc LINE L1 -2584 4357 1121 20586 20 0 0 chrX 158006393 158009613 -18964527 + L1HS LINE L1 2936 6155 0 243 0 0 0 chrX 158009647 158009674 -18964466 + (A)n Simple_repeat Simple_repeat 1 27 0 2709 170 37 19 chrX 158009674 158010297 -18963843 - L1MB5 LINE L1 -343 5831 5238 254 390 15 15 chrX 158010335 158010535 -18963605 - L1MCc LINE L1 -5406 1017 818 235 235 0 0 chrX 158011048 158011099 -18963041 - L1MCc LINE L1 -6270 153 103 * 913 244 18 25 chrX 158011091 158011374 -18962766 - L1MB5 LINE L1 -1871 4275 3995 298 325 92 42 chrX 158011654 158011894 -18962246 + MLT1K LTR MaLR 179 430 -158 348 244 55 101 chrX 158011993 158012210 -18961930 + MLT1J LTR MaLR 110 316 -195 251 224 47 12 chrX 158012357 158012442 -18961698 + MLT1K LTR MaLR 501 588 0 276 81 0 0 chrX 158012580 158012617 -18961523 - MLT2B1 LTR ERVL 0 520 484 273 29 0 0 chrX 158012621 158012655 -18961485 + (CA)n Simple_repeat Simple_repeat 2 35 0 310 157 0 0 chrX 158012674 158012725 -18961415 - MIR SINE MIR -36 226 176 249 33 0 0 chrX 158012740 158012770 -18961370 + (TA)n Simple_repeat Simple_repeat 2 31 0 * 276 30 0 0 chrX 158012769 158012802 -18961338 + (TG)n Simple_repeat Simple_repeat 2 34 0 2106 200 65 0 chrX 158012821 158013236 -18960904 - MLT2B1 LTR ERVL -78 442 1 522 222 0 28 chrX 158013237 158013345 -18960795 + MIR SINE MIR 142 246 -16 198 0 0 0 chrX 158014018 158014040 -18960100 + (TC)n Simple_repeat Simple_repeat 2 23 0 186 43 0 0 chrX 158014041 158014064 -18960076 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 245 29 29 0 chrX 158014063 158014097 -18960043 + (TG)n Simple_repeat Simple_repeat 2 36 0 2206 268 88 36 chrX 158014225 158015311 -18958829 + L1MEc LINE L1 753 1781 -4434 3597 123 2 17 chrX 158015311 158015846 -18958294 + MER1A DNA MER1_type 1 527 0 2206 268 88 36 chrX 158015846 158016192 -18957948 + L1MEc LINE L1 1781 2107 -4108 1911 158 7 13 chrX 158016192 158016495 -18957645 + AluJo SINE Alu 1 301 -11 2206 268 88 36 chrX 158016495 158017674 -18956466 + L1MEc LINE L1 2107 3648 -2567 1333 251 56 11 chrX 158017675 158018121 -18956019 + L1M4 LINE L1 4566 5031 -1115 554 147 35 9 chrX 158018117 158018233 -18955907 - L1MA4 LINE L1 -262 6038 5920 * 1160 67 0 30 chrX 158018266 158018430 -18955710 + L1PA10 LINE L1 6009 6167 -1 5280 95 14 1 chrX 158018430 158019169 -18954971 + L1PA11 LINE L1 5359 6106 -68 403 59 0 0 chrX 158019167 158019218 -18954922 - L1PA8 LINE L1 -112 6060 6010 * 1142 313 54 41 chrX 158019223 158019708 -18954432 + MLT1K LTR MaLR 92 582 -6 3189 215 95 52 chrX 158020731 158021037 -18953103 + L1MDa LINE L1 1007 1299 -5241 2074 103 0 27 chrX 158021037 158021337 -18952803 + AluSc SINE Alu 1 292 -17 2726 82 3 0 chrX 158021337 158021704 -18952436 + L1PA13 LINE L1 5796 6163 0 3189 215 95 52 chrX 158021704 158022633 -18951507 + L1MDa LINE L1 1298 2295 -4245 1037 303 131 25 chrX 158022711 158023438 -18950702 + L2 LINE L2 1492 2295 -1019 5911 125 29 2 chrX 158023447 158024376 -18949764 - Tigger1 DNA MER2_type 0 2418 1465 1221 197 0 5 chrX 158024376 158024579 -18949561 + AluJb SINE Alu 87 288 -24 6677 128 7 2 chrX 158024637 158025647 -18948493 - Tigger1 DNA MER2_type -961 1457 443 1164 104 0 99 chrX 158025647 158025869 -18948271 - THE1A LTR MaLR 0 355 156 266 221 132 15 chrX 158026875 158026943 -18947197 + MER69 DNA AcHobo 1 76 -2450 1459 101 14 14 chrX 158027019 158027238 -18946902 - HERVK14 LTR ERVK -5726 219 1 4394 50 43 33 chrX 158027238 158027837 -18946303 - LTR14B LTR ERVK 0 608 4 596 240 125 42 chrX 158027963 158028396 -18945744 - MLT1G3 LTR MaLR -4 551 126 13111 189 25 33 chrX 158028497 158030804 -18943336 - L1 LINE L1 -939 5909 3584 2347 77 3 10 chrX 158030804 158031104 -18943036 - AluSp SINE Alu -15 298 1 13111 189 25 33 chrX 158031104 158031592 -18942548 - L1 LINE L1 -3264 3584 3093 372 22 0 0 chrX 158031592 158031637 -18942503 + (TG)n Simple_repeat Simple_repeat 2 46 0 13111 189 25 33 chrX 158031637 158033061 -18941079 - L1 LINE L1 -3755 3093 1710 2518 154 32 0 chrX 158033079 158033514 -18940626 - L1PB4 LINE L1 -2 6154 5706 1083 77 90 49 chrX 158033514 158033716 -18940424 + THE1B LTR MaLR 1 209 -146 7271 54 3 0 chrX 158033716 158035189 -18938951 - L1PA5 LINE L1 -9 6145 4670 1934 139 17 0 chrX 158235690 158235991 -18738149 + AluSg SINE Alu 5 310 0 1306 293 128 29 chrX 158236718 158238000 -18736140 + L1M4 LINE L1 3528 4936 -1210 1533 230 31 53 chrX 158238020 158238624 -18735516 + L1ME1 LINE L1 4075 4665 -1481 1777 174 7 0 chrX 158238632 158238926 -18735214 + AluJo SINE Alu 1 296 -16 2409 202 34 37 chrX 158238926 158239367 -18734773 - MLT1E3 LTR MaLR -13 611 174 1291 207 67 69 chrX 158239367 158239758 -18734382 + MLT1B LTR MaLR 1 390 0 2409 202 34 37 chrX 158239758 158239891 -18734249 - MLT1E3 LTR MaLR -450 174 42 1289 229 80 36 chrX 158239901 158240355 -18733785 + L1ME1 LINE L1 5696 6163 -3 2150 110 3 0 chrX 158243057 158243364 -18730776 + AluSp SINE Alu 1 308 0 551 302 44 6 chrX 158243367 158243549 -18730591 - MIR SINE MIR -61 201 13 351 154 0 0 chrX 158243566 158243631 -18730509 + (TG)n Simple_repeat Simple_repeat 2 66 0 2430 38 0 0 chrX 158243989 158244279 -18729861 - L1PA5 LINE L1 0 6154 5865 190 319 0 0 chrX 158245168 158245215 -18728925 + L2 LINE L2 3262 3308 -5 588 323 99 44 chrX 158245784 158246220 -18727920 + LTR33 LTR ERVL 53 512 -9 2318 102 0 0 chrX 158246465 158246769 -18727371 + AluSg SINE Alu 1 304 -6 2085 171 47 28 chrX 158247104 158247649 -18726491 + MLT2A2 LTR ERVL 1 554 0 3507 243 9 1 chrX 158247917 158248866 -18725274 + L1 LINE L1 2925 3881 -2265 2823 97 12 5 chrX 158248857 158249279 -18724861 + L1P LINE L1 4883 5307 -839 * 243 0 0 0 chrX 158249293 158249320 -18724820 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 199 379 53 0 chrX 158249402 158249497 -18724643 - MIR SINE MIR -66 142 43 2527 124 3 0 chrX 158249499 158249861 -18724279 + L1PA15 LINE L1 5731 6093 -72 * 5957 99 10 14 chrX 158249860 158249874 -18724266 + L1PA10 LINE L1 5293 5306 -862 315 0 0 0 chrX 158249874 158249909 -18724231 + (CA)n Simple_repeat Simple_repeat 2 36 0 5957 99 10 14 chrX 158249909 158250769 -18723371 + L1PA10 LINE L1 5306 6164 -4 5777 215 11 8 chrX 158250774 158252589 -18721551 + L1PA16 LINE L1 3883 5700 -466 1602 180 220 0 chrX 158252589 158252934 -18721206 - MSTB LTR MaLR -2 424 4 7467 200 74 8 chrX 158252937 158254483 -18719657 - MSTB-int LTR MaLR 0 1651 3 1246 174 14 5 chrX 158254485 158254833 -18719307 - MSTB LTR MaLR 0 426 1 1662 142 121 8 chrX 158254835 158255220 -18718920 + L1PA16 LINE L1 5696 6165 -1 4533 163 22 27 chrX 158255313 158256203 -18717937 - L1MC1 LINE L1 -3 6330 5445 7422 96 7 19 chrX 158257226 158258296 -18715844 + MER11C LTR ERVK 1 1057 -14 1771 229 5 16 chrX 158258830 158259098 -18715042 + MER44D DNA MER2_type 8 272 -2215 2115 175 31 126 chrX 158259098 158259773 -18714367 + LTR9 LTR ERV1 2 612 0 1771 229 5 16 chrX 158259773 158259876 -18714264 + MER44D DNA MER2_type 272 375 -2112 1712 188 10 0 chrX 158259877 158260181 -18713959 + MER44D DNA MER2_type 427 605 0 1208 121 44 10 chrX 158261109 158261315 -18712825 + L1PA11 LINE L1 5955 6167 -7 313 179 90 13 chrX 158262294 158262372 -18711768 - L2 LINE L2 -2 3311 3228 876 147 56 0 chrX 158263272 158263415 -18710725 + MER2 DNA MER2_type 1 151 -194 5332 135 113 73 chrX 158263417 158263966 -18710174 - Tigger3b DNA MER2_type -1798 1230 705 1545 160 27 43 chrX 158263966 158264094 -18710046 - L1MA3 LINE L1 -1 6304 6175 1945 107 8 0 chrX 158264094 158264356 -18709784 - AluY SINE Alu -10 301 38 1545 160 27 43 chrX 158264356 158264595 -18709545 - L1MA3 LINE L1 -130 6175 5943 5332 135 113 73 chrX 158264595 158265226 -18708914 - Tigger3b DNA MER2_type -2323 705 2 1062 141 54 0 chrX 158265227 158265412 -18708728 + MER2 DNA MER2_type 151 345 0 36 0 0 0 chrX 158265794 158265830 -18708310 + AT_rich Low_complexity Low_complexity 1 36 0 564 246 46 29 chrX 158266185 158266360 -18707780 + MER5B DNA MER1_type 1 178 0 1799 96 0 0 chrX 158266847 158267096 -18707044 + L1PA13 LINE L1 5815 6063 -100 854 71 0 0 chrX 158267153 158267265 -18706875 + L1PA13 LINE L1 6047 6158 -5 200 308 86 26 chrX 158268347 158268464 -18705676 - L2 LINE L2 -230 3042 2919 184 250 125 19 chrX 158268606 158268710 -18705430 - L2 LINE L2 -603 2711 2597 385 340 26 41 chrX 158268764 158268958 -18705182 + MIR3 SINE MIR 16 206 -2 733 311 18 0 chrX 158270533 158270755 -18703385 + LTR16A LTR ERVL 219 444 -6 2274 108 0 0 chrX 158271175 158271481 -18702659 + AluSq SINE Alu 1 306 -7 717 243 25 20 chrX 158271536 158271738 -18702402 + L2 LINE L2 3111 3313 0 1498 191 25 3 chrX 158271970 158272252 -18701888 - MER65A LTR ERV1 -117 328 41 2428 126 0 5 chrX 158272257 158272631 -18701509 - L1PA15 LINE L1 0 6165 5794 504 307 20 5 chrX 158272651 158272853 -18701287 - HAL1 LINE L1 -604 1903 1699 249 165 177 13 chrX 158272925 158273004 -18701136 + MER92B LTR ERV1 541 632 -4 257 296 37 0 chrX 158273502 158273583 -18700557 + LTR67 LTR ERVL 439 522 -35 1493 256 194 57 chrX 158274109 158274375 -18699765 + L1M4 LINE L1 67 295 -6247 2154 96 51 0 chrX 158274375 158274668 -18699472 + AluSp SINE Alu 4 311 -2 1493 256 194 57 chrX 158274668 158275281 -18698859 + L1M4 LINE L1 295 1067 -5475 21032 158 12 33 chrX 158275653 158280685 -18693455 - L1PA11 LINE L1 0 6174 1257 2829 56 0 5 chrX 158281123 158281513 -18692627 - L1P LINE L1 -2716 3430 3043 15240 35 4 11 chrX 158281513 158284129 -18690011 + L1PA5 LINE L1 3548 6153 -1 1132 334 39 9 chrX 158285270 158285707 -18688433 + LTR33 LTR ERVL 70 519 -2 1537 335 72 51 chrX 158285980 158287608 -18686532 - HERV16 LTR ERVL -591 5063 3402 1084 290 116 45 chrX 158287999 158288254 -18685886 - HERV16 LTR ERVL -4349 647 412 2303 100 3 0 chrX 158288254 158288563 -18685577 + AluSq SINE Alu 1 310 -3 1084 290 116 45 chrX 158288563 158288911 -18685229 - HERV16 LTR ERVL -4584 412 1 818 322 39 34 chrX 158288911 158289348 -18684792 - LTR16A LTR ERVL 0 457 1 331 257 170 23 chrX 158289752 158289923 -18684217 - MLT1L LTR MaLR -5 610 415 237 139 0 0 chrX 158290039 158290082 -18684058 + (GA)n Simple_repeat Simple_repeat 1 43 0 235 306 24 12 chrX 158290143 158290228 -18683912 - MLT1L LTR MaLR -340 275 190 500 90 26 0 chrX 158290230 158290308 -18683832 - MADE1 DNA Mariner 0 80 1 32 0 0 0 chrX 158290585 158290617 -18683523 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chrX 158291167 158291191 -18682949 + AT_rich Low_complexity Low_complexity 1 24 0 1241 145 5 0 chrX 158292264 158292464 -18681676 + Tigger7 DNA MER2_type 2387 2587 0 232 353 35 17 chrX 158292584 158292700 -18681440 + MIR3 SINE MIR 76 193 -15 11407 198 17 2 chrX 158293333 158295353 -18678787 + L1PA13 LINE L1 2 2052 -4735 393 22 0 0 chrX 158296147 158296193 -18677947 + (CA)n Simple_repeat Simple_repeat 2 47 0 199 378 12 54 chrX 158296396 158296637 -18677503 - L2 LINE L2 -563 2751 2521 183 361 44 27 chrX 158297050 158297233 -18676907 - L2 LINE L2 -1309 2005 1820 365 203 68 116 chrX 158297835 158298023 -18676117 - MLT1J2 LTR MaLR -227 182 5 332 300 77 23 chrX 158299385 158299515 -18674625 - MLT1J2 LTR MaLR -44 406 270 1273 263 64 15 chrX 158299517 158299909 -18674231 - LTR52 LTR ERVL -2 419 9 245 295 37 104 chrX 158299919 158300160 -18673980 - MLT1J2 LTR MaLR -214 236 12 222 191 0 0 chrX 158300598 158300645 -18673495 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 187 294 83 55 chrX 158300748 158300857 -18673283 + MIR SINE MIR 19 130 -78 1469 138 0 65 chrX 158301871 158302131 -18672009 + AluSx SINE Alu 3 245 -67 237 65 0 0 chrX 158302131 158302162 -18671978 + (CA)n Simple_repeat Simple_repeat 2 32 0 542 272 68 12 chrX 158302699 158302861 -18671279 - MER69A DNA AcHobo 0 177 7 355 209 23 12 chrX 158304035 158304121 -18670019 - LTR40a LTR ERVL -429 90 4 21 89 0 0 chrX 158304187 158304243 -18669897 + AT_rich Low_complexity Low_complexity 1 56 0 1154 248 74 54 chrX 158304243 158304531 -18669609 - L1ME2 LINE L1 -6 6158 5854 1960 85 56 4 chrX 158304531 158304821 -18669319 - AluSg SINE Alu 0 304 1 1154 248 74 54 chrX 158304821 158305015 -18669125 - L1ME2 LINE L1 -310 5854 5665 297 296 11 0 chrX 158305107 158305195 -18668945 + L1MC/D LINE L1 5507 5595 -2213 2282 94 3 3 chrX 158305300 158305607 -18668533 + AluSq SINE Alu 1 307 -6 349 318 92 24 chrX 158305621 158306045 -18668095 + L1M4 LINE L1 4723 5175 -971 269 301 57 42 chrX 158306106 158306408 -18667732 + L1M4 LINE L1 5255 5558 -612 297 263 0 0 chrX 158306412 158306492 -18667648 - MLT1J LTR MaLR -13 498 419 331 237 237 0 chrX 158306536 158306671 -18667469 - MLT1J LTR MaLR -243 268 102 306 292 110 30 chrX 158306686 158306922 -18667218 + L1M4 LINE L1 5551 5805 -373 2309 93 0 0 chrX 158307264 158307566 -18666574 + AluY SINE Alu 1 302 -9 183 42 0 0 chrX 158309144 158309168 -18664972 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 13947 175 61 38 chrX 158309639 158313160 -18660980 - L1 LINE L1 -921 6644 2942 2293 98 3 0 chrX 158313160 158313455 -18660685 - AluSq SINE Alu -15 298 3 13947 175 61 38 chrX 158313455 158315313 -18658827 - L1 LINE L1 -4623 2942 1130 31 0 0 0 chrX 158315491 158315522 -18658618 + AT_rich Low_complexity Low_complexity 1 31 0 577 338 92 33 chrX 158315540 158315966 -18658174 + L1ME LINE L1 5297 5747 -374 21 0 0 0 chrX 158318570 158318591 -18655549 + AT_rich Low_complexity Low_complexity 1 21 0 2074 243 23 27 chrX 158320066 158320589 -18653551 + MLT1F LTR MaLR 3 523 -19 1752 235 15 41 chrX 158323171 158323702 -18650438 + L1M4 LINE L1 4458 4974 -1172 467 142 225 17 chrX 158323724 158323844 -18650296 - L1MB4 LINE L1 -7 6173 6029 1864 171 60 46 chrX 158323852 158324286 -18649854 - MSTB2 LTR MaLR 0 457 18 1091 205 23 8 chrX 158324286 158324545 -18649595 - L1MB5 LINE L1 -152 6022 5760 * 6180 89 6 0 chrX 158324531 158325364 -18648776 - L1PA11 LINE L1 0 6174 5337 3053 166 34 0 chrX 158325358 158325925 -18648215 + L1PA11 LINE L1 4738 5323 -823 * 2247 184 37 7 chrX 158325937 158326524 -18647616 - L1MB5 LINE L1 -399 5775 5173 869 293 105 15 chrX 158326619 158327028 -18647112 - MLT1J2 LTR MaLR -4 446 1 1377 188 56 59 chrX 158327152 158327508 -18646632 + MLT1B LTR MaLR 1 355 -35 5372 107 22 11 chrX 158328911 158329297 -18644843 - L1PA15 LINE L1 0 6165 5785 1556 77 0 0 chrX 158329297 158329492 -18644648 - AluY SINE Alu -12 299 105 5372 107 22 11 chrX 158329492 158330019 -18644121 - L1PA15 LINE L1 -380 5785 5266 1802 113 4 8 chrX 158330019 158330276 -18643864 + AluSx SINE Alu 43 298 -14 5372 107 22 11 chrX 158330276 158331221 -18642919 - L1PA15 LINE L1 -899 5266 4279 23 0 0 0 chrX 158331672 158331695 -18642445 + AT_rich Low_complexity Low_complexity 1 23 0 244 191 21 0 chrX 158332685 158332732 -18641408 - MIR SINE MIR -147 115 68 14394 139 23 9 chrX 158332792 158335178 -18638962 - Tigger1 DNA MER2_type 0 2418 1 4437 204 57 25 chrX 158335409 158336108 -18638032 - L1MB3 LINE L1 -2 6181 5506 180 0 0 0 chrX 158336108 158336128 -18638012 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4437 204 57 25 chrX 158336128 158336877 -18637263 - L1MB3 LINE L1 -677 5506 4656 2191 102 0 0 chrX 158336877 158337161 -18636979 - AluSg SINE Alu -26 284 1 4437 204 57 25 chrX 158337161 158337671 -18636469 - L1MB3 LINE L1 -1527 4656 4164 2107 106 0 3 chrX 158337762 158338068 -18636072 - AluSx SINE Alu 0 305 1 990 227 22 123 chrX 158338194 158338600 -18635540 + MLT1A1 LTR MaLR 1 365 0 533 218 0 0 chrX 158338618 158338719 -18635421 + Tigger3b DNA MER2_type 2 102 -1129 * 5137 126 61 24 chrX 158338717 158339209 -18634931 + Tigger3b DNA MER2_type 274 746 -2282 2422 84 0 0 chrX 158339209 158339508 -18634632 - AluY SINE Alu -12 299 1 5137 126 61 24 chrX 158339508 158339938 -18634202 + Tigger3b DNA MER2_type 746 1230 -1 1346 219 67 35 chrX 158339994 158340396 -18633744 - LTR52 LTR ERVL -2 419 5 1302 228 13 10 chrX 158340403 158340706 -18633434 - L1ME LINE L1 -407 5763 5460 1917 156 98 43 chrX 158340754 158341152 -18632988 + MSTA LTR MaLR 9 428 0 23 33 0 0 chrX 158341251 158341281 -18632859 + AT_rich Low_complexity Low_complexity 1 30 0 2161 122 6 3 chrX 158341341 158341652 -18632488 - AluSx SINE Alu 0 312 1 249 258 52 58 chrX 158343006 158343161 -18630979 + LTR31 LTR ERV1 437 590 -29 6429 17 9 0 chrX 158343168 158343920 -18630220 + L1P LINE L1 3935 4693 -1453 1291 182 12 104 chrX 158344013 158344359 -18629781 + MER67D LTR ERV1 1 314 -200 393 128 13 39 chrX 158344409 158344487 -18629653 + MER67D LTR ERV1 308 383 -131 1663 226 42 24 chrX 158344830 158345265 -18628875 - MER89 LTR ERV1 0 559 18 878 134 31 68 chrX 158346412 158346691 -18627449 - L1P LINE L1 -737 5429 5164 1995 141 23 0 chrX 158346694 158347058 -18627082 + L1PA11 LINE L1 5417 5827 -347 192 339 16 40 chrX 158347961 158348085 -18626055 - MIR SINE MIR -31 231 111 229 260 20 0 chrX 158348206 158348256 -18625884 - MIR SINE MIR -146 116 66 594 333 67 21 chrX 158348316 158348646 -18625494 + L1ME1 LINE L1 58 402 -5994 728 304 58 18 chrX 158348724 158349172 -18624968 + L1ME1 LINE L1 593 1058 -5338 1254 254 81 10 chrX 158349240 158349399 -18624741 + L1ME1 LINE L1 2287 2433 -3782 2308 166 18 23 chrX 158349399 158349834 -18624306 + Tigger2a DNA MER2_type 1 433 -1 1254 254 81 10 chrX 158349834 158350181 -18623959 + L1ME1 LINE L1 2433 2829 -3386 1840 247 63 13 chrX 158350260 158351196 -18622944 + L1ME1 LINE L1 5062 6211 -24 2442 119 19 3 chrX 158351196 158351565 -18622575 - THE1C LTR MaLR 0 375 1 10984 104 11 12 chrX 158351567 158353147 -18620993 - THE1C-int LTR MaLR -2 1578 1 2148 128 30 35 chrX 158353147 158353513 -18620627 - THE1B LTR MaLR 0 364 1 1831 93 69 7 chrX 158353517 158353808 -18620332 - THE1C-int LTR MaLR -1270 310 2 2358 136 22 3 chrX 158353809 158354177 -18619963 - THE1C LTR MaLR 0 375 1 551 267 141 0 chrX 158354251 158354442 -18619698 + MIR SINE MIR 32 249 -13 21 36 0 0 chrX 158354865 158354893 -18619247 + AT_rich Low_complexity Low_complexity 1 28 0 204 200 0 0 chrX 158355009 158355049 -18619091 + C-rich Low_complexity Low_complexity 3 42 0 441 116 0 0 chrX 158356412 158356481 -18617659 + (TG)n Simple_repeat Simple_repeat 2 70 0 23 0 0 0 chrX 158356600 158356623 -18617517 + AT_rich Low_complexity Low_complexity 1 23 0 509 261 37 18 chrX 158356681 158356899 -18617241 - L1MEc LINE L1 -3065 3150 2929 22 56 0 0 chrX 158356966 158357002 -18617138 + AT_rich Low_complexity Low_complexity 1 36 0 387 281 74 0 chrX 158357556 158357677 -18616463 + L1MC3 LINE L1 5516 5645 -521 1082 222 70 28 chrX 158357677 158357883 -18616257 - L1M4 LINE L1 -659 5525 5329 2133 142 3 0 chrX 158357883 158358193 -18615947 + AluSx SINE Alu 1 311 -1 1082 222 70 28 chrX 158358193 158358479 -18615661 - L1M4 LINE L1 -855 5329 5004 2293 237 74 33 chrX 158358482 158359262 -18614878 - L1MC3 LINE L1 -925 6860 6049 921 258 13 55 chrX 158359255 158359630 -18614510 - L1MCb LINE L1 -5727 318 3 * 317 321 68 9 chrX 158359739 158359892 -18614248 - L1MEc LINE L1 -4420 1976 1805 963 129 0 0 chrX 158359892 158360047 -18614093 + (TA)n Simple_repeat Simple_repeat 1 155 0 317 321 68 9 chrX 158360047 158360114 -18614026 - L1MEc LINE L1 -4591 1805 1743 638 275 52 62 chrX 158360126 158360529 -18613611 - L1MEc LINE L1 -4422 2141 1743 739 250 48 0 chrX 158360668 158360876 -18613264 - L1MEc LINE L1 -4874 1510 1293 805 245 21 19 chrX 158360876 158361218 -18612922 - MLT1D LTR MaLR 0 624 263 997 302 29 39 chrX 158361231 158361745 -18612395 + L1MC3 LINE L1 5845 6353 -1432 2675 84 3 19 chrX 158361758 158362127 -18612013 + THE1B LTR MaLR 2 364 0 2492 165 19 17 chrX 158362127 158362545 -18611595 + MSTB LTR MaLR 8 426 0 3977 252 34 50 chrX 158362558 158363151 -18610989 + L1MC4a LINE L1 6390 6991 -817 1492 235 49 64 chrX 158363151 158363679 -18610461 + MLT2B1 LTR ERVL 1 520 0 3977 252 34 50 chrX 158363679 158364527 -18609613 + L1MC4a LINE L1 6991 7808 0 19143 49 53 3 chrX 158364553 158367014 -18607126 + L1P LINE L1 1 2583 -3563 24 32 0 0 chrX 158367417 158367448 -18606692 + AT_rich Low_complexity Low_complexity 1 31 0 243 291 68 39 chrX 158367663 158367766 -18606374 + MIR SINE MIR 23 128 -80 33 43 0 0 chrX 158368952 158368999 -18605141 + AT_rich Low_complexity Low_complexity 1 47 0 22275 112 37 26 chrX 158369493 158373169 -18600971 + LOR1b-int LTR ERV1 1737 5456 -2664 2337 88 0 3 chrX 158373169 158373475 -18600665 + AluY SINE Alu 1 305 -6 22275 112 37 26 chrX 158373475 158373545 -18600595 + LOR1b-int LTR ERV1 5456 5524 -2596 1871 90 4 0 chrX 158373544 158373799 -18600341 + LOR1b-int LTR ERV1 5809 6064 -2056 * 614 88 11 11 chrX 158373798 158373889 -18600251 + LOR1b-int LTR ERV1 8030 8120 0 * 2483 181 7 13 chrX 158373889 158374353 -18599787 + LOR1b LTR ERV1 1 461 0 749 290 16 0 chrX 158374359 158374545 -18599595 + MER5A DNA MER1_type 1 189 0 2950 162 2 6 chrX 158375086 158375585 -18598555 - LOR1a LTR ERV1 0 497 1 389 264 152 0 chrX 158375744 158375869 -18598271 - MIR SINE MIR -73 189 46 446 322 96 14 chrX 158376122 158376330 -18597810 + MER20B DNA MER1_type 1 225 -558 34 24 0 0 chrX 158376535 158376576 -18597564 + AT_rich Low_complexity Low_complexity 1 41 0 590 269 42 0 chrX 158377633 158377800 -18596340 - MER5B DNA MER1_type -4 174 1 367 179 24 24 chrX 158377965 158378088 -18596052 + CT-rich Low_complexity Low_complexity 3 125 0 216 303 40 71 chrX 158378136 158378235 -18595905 - L2 LINE L2 -44 3228 3133 228 67 0 0 chrX 158379136 158379166 -18594974 + (TA)n Simple_repeat Simple_repeat 2 31 0 734 130 27 14 chrX 158379196 158379342 -18594798 - L1MA4A LINE L1 -11 6292 6145 812 148 13 13 chrX 158379795 158379950 -18594190 + L1MD3 LINE L1 7819 7973 -22 * 1395 184 24 0 chrX 158379938 158380107 -18594033 - L1P LINE L1 -796 5350 5170 339 25 0 0 chrX 158380107 158380147 -18593993 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 1395 184 24 0 chrX 158380147 158380271 -18593869 - L1P LINE L1 -976 5170 5050 * 4295 148 29 26 chrX 158380269 158381029 -18593111 + L1PA14 LINE L1 5355 6119 -42 2045 121 10 3 chrX 158381029 158381327 -18592813 + AluSx SINE Alu 1 300 -12 4295 148 29 26 chrX 158381327 158381365 -18592775 + L1PA14 LINE L1 6119 6155 -6 200 254 119 0 chrX 158381427 158381486 -18592654 + L2 LINE L2 3244 3309 -4 24 0 0 0 chrX 158381491 158381515 -18592625 + AT_rich Low_complexity Low_complexity 1 24 0 345 350 129 14 chrX 158381659 158381876 -18592264 + MIR SINE MIR 15 256 -6 249 33 0 0 chrX 158382120 158382150 -18591990 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 324 275 33 0 chrX 158382163 158382254 -18591886 - L2 LINE L2 -25 3247 3154 1501 195 9 58 chrX 158382272 158382620 -18591520 + MLT1B LTR MaLR 12 342 -48 244 342 33 53 chrX 158382663 158382815 -18591325 - MER5A DNA MER1_type -30 159 11 531 244 63 0 chrX 158382846 158382973 -18591167 - MER105 DNA DNA -62 142 8 181 402 21 0 chrX 158383054 158383151 -18590989 + MIR SINE MIR 47 145 -63 217 275 69 46 chrX 158383192 158383323 -18590817 + MIR SINE MIR 129 262 0 1409 176 40 31 chrX 158383914 158384237 -18589903 - MLT2D LTR ERVL -6 408 83 969 278 96 11 chrX 158384415 158384771 -18589369 - L2 LINE L2 -1076 2238 1853 573 158 0 0 chrX 158384813 158384914 -18589226 + (TA)n Simple_repeat Simple_repeat 2 102 0 1386 186 53 3 chrX 158384914 158385199 -18588941 - L1MC1 LINE L1 -7 6326 6028 1248 146 113 77 chrX 158385410 158385540 -18588600 + MSTA LTR MaLR 3 127 -301 2354 83 0 7 chrX 158385540 158385842 -18588298 + AluY SINE Alu 1 300 -11 1248 146 113 77 chrX 158385842 158386062 -18588078 + MSTA LTR MaLR 127 428 0 253 155 17 35 chrX 158386386 158386444 -18587696 - MER52C LTR ERV1 0 1278 1222 * 5225 197 104 84 chrX 158386439 158387873 -18586267 - MER52A LTR ERV1 -243 1512 50 330 376 17 17 chrX 158388892 158389070 -18585070 + MIR SINE MIR 20 197 -65 1003 249 84 9 chrX 158390410 158390755 -18583385 - L1MC4 LINE L1 -589 7453 7083 198 0 0 0 chrX 158391099 158391121 -18583019 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 2322 109 27 38 chrX 158391248 158391616 -18582524 + THE1B LTR MaLR 1 364 0 3454 192 50 81 chrX 158392257 158393394 -18580746 - L1MA10 LINE L1 -12 6322 5221 533 278 127 6 chrX 158393402 158393733 -18580407 + L1ME1 LINE L1 884 1254 -5142 21 71 0 0 chrX 158393817 158393859 -18580281 + AT_rich Low_complexity Low_complexity 1 42 0 5457 238 26 63 chrX 158393931 158396160 -18577980 + L1P3 LINE L1 5 2167 -4294 1839 91 15 0 chrX 158396157 158396431 -18577709 - L1P LINE L1 -781 5365 5088 * 4894 144 13 20 chrX 158396428 158397495 -18576645 + L1MD2 LINE L1 4352 5663 -579 513 253 90 13 chrX 158397595 158397894 -18576246 + L1MD2 LINE L1 5967 6337 -22 560 241 7 7 chrX 158397935 158398076 -18576064 + L1ME1 LINE L1 2731 2871 -3344 * 2187 250 84 33 chrX 158398070 158398136 -18576004 + L1ME1 LINE L1 4788 4849 -1386 393 39 0 0 chrX 158398136 158398187 -18575953 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 2187 250 84 33 chrX 158398187 158399492 -18574648 + L1ME1 LINE L1 4849 6230 -5 284 317 0 73 chrX 158401278 158401401 -18572739 - L2 LINE L2 -8 3264 3151 458 332 78 17 chrX 158401455 158401687 -18572453 - MIR SINE MIR -4 258 13 2273 102 0 0 chrX 158404019 158404312 -18569828 - AluSx SINE Alu -19 293 1 30 27 0 0 chrX 158404707 158404744 -18569396 + AT_rich Low_complexity Low_complexity 1 37 0 210 164 0 0 chrX 158405573 158405628 -18568512 + (TA)n Simple_repeat Simple_repeat 2 56 0 448 220 13 6 chrX 158405678 158405837 -18568303 + CT-rich Low_complexity Low_complexity 1 160 0 211 349 95 16 chrX 158406124 158406250 -18567890 - L2 LINE L2 -189 3083 2948 401 339 48 16 chrX 158407118 158407307 -18566833 - MIR3 SINE MIR -6 202 8 307 299 155 17 chrX 158408014 158408188 -18565952 + MIR SINE MIR 41 238 -24 6382 201 27 1 chrX 158409363 158410798 -18563342 - L1 LINE L1 -1627 5479 4008 1786 296 62 91 chrX 158410794 158410945 -18563195 - L1P LINE L1 -2116 4030 3876 * 378 0 0 0 chrX 158410945 158410987 -18563153 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1786 296 62 91 chrX 158410987 158411093 -18563047 - L1P LINE L1 -2270 3876 3768 332 143 0 0 chrX 158411093 158411149 -18562991 + Alu SINE Alu 245 300 -1 1786 296 62 91 chrX 158411149 158411166 -18562974 - L1P LINE L1 -2378 3768 3752 1211 111 5 11 chrX 158411166 158411355 -18562785 + L1PB1 LINE L1 5961 6148 -3 1786 296 62 91 chrX 158411355 158411563 -18562577 - L1P LINE L1 -2394 3752 3513 264 100 0 0 chrX 158411563 158411603 -18562537 + (TG)n Simple_repeat Simple_repeat 1 40 0 1786 296 62 91 chrX 158411603 158411745 -18562395 - L1P LINE L1 -2633 3513 3368 776 207 28 59 chrX 158411725 158412015 -18562125 - L1 LINE L1 -3086 4020 3740 * 1676 213 9 21 chrX 158412021 158412051 -18562089 - MLT2B3 LTR ERVL -12 542 513 617 38 12 0 chrX 158412051 158412131 -18562009 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 1676 213 9 21 chrX 158412131 158412438 -18561702 - MLT2B3 LTR ERVL -41 513 209 7558 26 0 1 chrX 158412438 158413545 -18560595 + L1PA3 LINE L1 5066 6171 0 1886 298 28 16 chrX 158413592 158414284 -18559856 - L1 LINE L1 -6313 717 18 11724 90 27 17 chrX 158414622 158417624 -18556516 - MER61A-int LTR ERV1 -260 4957 1847 1253 106 41 6 chrX 158417643 158417890 -18556250 - MER61A-int LTR ERV1 -3596 1621 1320 * 1972 138 15 35 chrX 158417883 158418497 -18555643 - MER61A-int LTR ERV1 -4440 777 1 851 157 6 50 chrX 158418497 158418656 -18555484 - MER61A LTR ERV1 0 343 192 215 339 40 52 chrX 158418959 158419133 -18555007 - MIR SINE MIR -42 220 49 25 0 0 0 chrX 158419233 158419258 -18554882 + AT_rich Low_complexity Low_complexity 1 25 0 233 287 57 101 chrX 158419756 158420031 -18554109 - L1M4 LINE L1 -3403 2743 2480 378 0 0 0 chrX 158420031 158420073 -18554067 + (TG)n Simple_repeat Simple_repeat 1 42 0 233 287 57 101 chrX 158420073 158420093 -18554047 - L1M4 LINE L1 -3666 2480 2461 231 139 0 0 chrX 158421054 158421097 -18553043 + L1MA4A LINE L1 6244 6286 -17 469 150 0 0 chrX 158421102 158421182 -18552958 + L1MA4A LINE L1 6197 6276 -27 668 167 160 0 chrX 158421205 158421355 -18552785 - L1MA4 LINE L1 -103 6197 6024 3879 205 44 8 chrX 158421945 158422966 -18551174 - L1MB5 LINE L1 -9 6663 5606 3491 248 72 39 chrX 158422962 158424985 -18549155 - L1MB5 LINE L1 -4549 2097 3 * 2850 163 88 60 chrX 158425506 158426596 -18547544 + L1MA8 LINE L1 4675 5779 -512 265 47 47 0 chrX 158426596 158426639 -18547501 + (TA)n Simple_repeat Simple_repeat 1 45 0 2130 119 50 30 chrX 158426639 158427000 -18547140 - THE1C LTR MaLR -5 370 3 9137 120 57 39 chrX 158427003 158428556 -18545584 - THE1C-int LTR MaLR 0 1580 1 2038 130 50 19 chrX 158428558 158428920 -18545220 - THE1C LTR MaLR -2 373 1 2214 147 37 59 chrX 158428922 158429431 -18544709 + L1MA8 LINE L1 5787 6284 -7 5864 101 12 9 chrX 158429538 158429596 -18544544 + L1PA12 LINE L1 5308 5364 -804 2456 84 3 0 chrX 158429596 158429904 -18544236 + AluSp SINE Alu 1 309 -4 5864 101 12 9 chrX 158429904 158430703 -18543437 + L1PA12 LINE L1 5364 6167 -1 508 269 54 12 chrX 158431689 158431856 -18542284 + MER5B DNA MER1_type 4 177 -1 262 342 0 0 chrX 158433581 158433660 -18540480 - MIR SINE MIR -76 132 54 241 344 45 32 chrX 158433737 158433891 -18540249 - MER5A DNA MER1_type 0 189 34 1013 173 20 25 chrX 158434108 158434310 -18539830 + L1M2 LINE L1 5450 5650 -662 260 246 0 0 chrX 158434315 158434376 -18539764 - MER6 DNA MER2_type -13 852 792 743 183 22 15 chrX 158435844 158435981 -18538159 + MER5A DNA MER1_type 1 138 -51 225 0 0 0 chrX 158435992 158436017 -18538123 + (TG)n Simple_repeat Simple_repeat 1 25 0 1694 216 46 22 chrX 158436021 158436474 -18537666 - L1MD3 LINE L1 -126 7869 7406 312 179 0 51 chrX 158436476 158436554 -18537586 - MLT1F1 LTR MaLR -445 122 49 310 186 8 97 chrX 158436566 158436690 -18537450 - L1MC3 LINE L1 -691 7094 6982 1138 191 28 26 chrX 158436815 158437122 -18537018 - L1MA9 LINE L1 -55 6129 5816 * 4376 175 70 152 chrX 158437110 158437613 -18536527 - L1MA9 LINE L1 -1014 5132 4589 392 172 0 0 chrX 158437613 158437677 -18536463 - FLAM_A SINE Alu -7 126 63 4376 175 70 152 chrX 158437677 158437950 -18536190 - L1MA9 LINE L1 -1557 4589 4295 800 159 0 8 chrX 158437950 158438076 -18536064 - FLAM_C SINE Alu -18 125 1 4376 175 70 152 chrX 158438076 158438977 -18535163 - L1MA9 LINE L1 -1851 4295 3420 4104 249 51 38 chrX 158438975 158440647 -18533493 - L1M4 LINE L1 -1186 4960 3268 * 807 161 31 0 chrX 158440660 158440790 -18533350 - AluJo SINE Alu -178 134 1 13986 196 75 7 chrX 158441209 158444786 -18529354 + L1M1 LINE L1 16 4008 -3557 4700 254 7 8 chrX 158444787 158445996 -18528144 + L1M1 LINE L1 4990 6196 -1369 2057 142 24 37 chrX 158445996 158446198 -18527942 + THE1C LTR MaLR 1 197 -178 2215 114 0 3 chrX 158446198 158446496 -18527644 - AluY SINE Alu -14 297 1 2057 142 24 37 chrX 158446496 158446673 -18527467 + THE1C LTR MaLR 197 375 0 10063 128 39 3 chrX 158446673 158448199 -18525941 + THE1C-int LTR MaLR 1 1580 0 3201 164 26 16 chrX 158448216 158448795 -18525345 + MSTA-int LTR MaLR 990 1574 -6 2495 166 16 5 chrX 158448800 158449223 -18524917 + MSTA LTR MaLR 1 428 0 3833 193 18 11 chrX 158449223 158450177 -18523963 + L1M1 LINE L1 4511 5472 -743 3361 87 30 2 chrX 158450202 158450672 -18523468 - L1PA10 LINE L1 -13 6155 5673 4607 109 21 1 chrX 158450674 158451544 -18522596 - L1PA10 LINE L1 -236 5932 5049 5098 148 27 16 chrX 158451544 158452347 -18521793 + L1MA3 LINE L1 5370 6186 -119 3662 109 0 4 chrX 158452347 158452860 -18521280 - MER9 LTR ERVK 0 511 1 5098 148 27 16 chrX 158452860 158452982 -18521158 + L1MA3 LINE L1 6186 6305 0 1328 244 118 73 chrX 158453677 158454349 -18519791 - MER50 LTR ERV1 -23 711 10 1623 199 28 45 chrX 158454583 158454758 -18519382 + MLT1B LTR MaLR 1 178 -212 2406 82 0 3 chrX 158454758 158455062 -18519078 + AluY SINE Alu 1 303 -8 1623 199 28 45 chrX 158455062 158455283 -18518857 + MLT1B LTR MaLR 178 390 0 1358 276 92 13 chrX 158455329 158455797 -18518343 - MLT1D LTR MaLR 0 505 1 183 216 11 23 chrX 158455814 158455902 -18518238 + CT-rich Low_complexity Low_complexity 2 88 0 13545 25 0 0 chrX 158456849 158459208 -18514932 - L1PA2 LINE L1 -1 6154 3796 46 19 0 0 chrX 158459397 158459450 -18514690 + AT_rich Low_complexity Low_complexity 1 53 0 294 350 61 30 chrX 158460638 158460835 -18513305 + MIR SINE MIR 18 220 -42 2127 128 3 0 chrX 158461498 158461819 -18512321 - L1PA15 LINE L1 -4 6161 5840 1248 128 0 87 chrX 158462240 158462482 -18511658 - AluJb SINE Alu 0 307 85 10249 148 12 8 chrX 158463995 158465023 -18509117 + L1MA1 LINE L1 3342 4364 -1938 1922 146 0 10 chrX 158465023 158465318 -18508822 + AluSc SINE Alu 1 292 -17 10249 148 12 8 chrX 158465318 158467239 -18506901 + L1MA1 LINE L1 4364 6302 0 215 219 0 0 chrX 158467978 158468019 -18506121 + (TG)n Simple_repeat Simple_repeat 1 41 0 415 340 98 66 chrX 158469290 158469625 -18504515 - L2 LINE L2 -1 3271 2926 707 201 7 13 chrX 158469632 158469781 -18504359 - MER45C DNA AcHobo -6 947 800 614 221 9 0 chrX 158469898 158470011 -18504129 - MER45C DNA AcHobo -747 206 93 4679 277 60 14 chrX 158470011 158471371 -18502769 + L1M4 LINE L1 13 1435 -5424 1260 264 20 3 chrX 158471374 158471764 -18502376 + L1M4 LINE L1 4836 5232 -1725 390 174 35 26 chrX 158471750 158471865 -18502275 + L1M4 LINE L1 6033 6148 -809 * 431 269 187 11 chrX 158471882 158472064 -18502076 - L2 LINE L2 -558 2756 2543 494 193 19 12 chrX 158472073 158472199 -18501941 - L1MA4A LINE L1 -1 6280 6053 * 714 157 7 20 chrX 158472185 158472338 -18501802 - L1MA4A LINE L1 -181 6122 5972 362 329 102 9 chrX 158472639 158472855 -18501285 + MIR SINE MIR 15 250 -12 228 178 0 0 chrX 158473280 158473325 -18500815 - L1 LINE L1 -1626 4520 4476 6509 66 34 13 chrX 158473390 158474155 -18499985 - L1PA8A LINE L1 -13 6118 5371 2208 119 0 0 chrX 158474155 158474449 -18499691 - AluSc SINE Alu -15 294 1 6509 66 34 13 chrX 158474449 158475333 -18498807 - L1PA8A LINE L1 -760 5371 4453 949 227 5 23 chrX 158475356 158475599 -18498541 - AluJo SINE Alu 0 311 73 411 233 0 0 chrX 158475599 158475702 -18498438 - L1 LINE L1 -1668 4478 4376 2515 186 14 4 chrX 158475742 158476238 -18497902 + L1MA9 LINE L1 5611 6111 -201 314 267 48 24 chrX 158476238 158476403 -18497737 + L1M4 LINE L1 3239 3407 -2739 23 0 0 0 chrX 158476623 158476646 -18497494 + AT_rich Low_complexity Low_complexity 1 23 0 347 147 29 0 chrX 158476673 158476741 -18497399 + GA-rich Low_complexity Low_complexity 1 70 0 23 68 0 0 chrX 158478786 158478830 -18495310 + AT_rich Low_complexity Low_complexity 1 44 0 239 321 36 27 chrX 158478972 158479084 -18495056 + MLT1K LTR MaLR 279 391 -197 192 97 0 0 chrX 158479232 158479263 -18494877 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 323 234 117 23 chrX 158479329 158479457 -18494683 - L1ME LINE L1 -461 5660 5521 243 220 0 0 chrX 158479537 158479587 -18494553 - L2 LINE L2 -1 3312 3263 638 124 0 9 chrX 158479941 158480046 -18494094 - L1MB3 LINE L1 -228 5955 5852 4752 182 9 28 chrX 158480526 158481712 -18492428 + L1MB3 LINE L1 5016 6181 -2 2436 71 0 0 chrX 158482914 158483210 -18490930 - AluY SINE Alu -15 296 1 310 218 45 23 chrX 158483248 158483381 -18490759 + (TA)n Simple_repeat Simple_repeat 1 136 0 1857 135 3 93 chrX 158486547 158486903 -18487237 - MER4A LTR ERV1 0 664 341 493 135 101 0 chrX 158486919 158487008 -18487132 - MER4A LTR ERV1 -566 98 1 2362 83 35 11 chrX 158487013 158487361 -18486779 - MER4A-int LTR ERV1 -1 6597 6242 1883 128 7 7 chrX 158487367 158487665 -18486475 - L1MA4A LINE L1 -309 5994 5697 5068 40 14 3 chrX 158487762 158488389 -18485751 - L1PA5 LINE L1 -5 6149 5516 1315 238 59 85 chrX 158489765 158489838 -18484302 + MLT1G LTR MaLR 1 74 -516 2485 71 0 10 chrX 158489838 158490147 -18483993 + AluY SINE Alu 1 306 -5 1315 238 59 85 chrX 158490147 158490667 -18483473 + MLT1G LTR MaLR 74 526 -64 185 414 53 0 chrX 158490803 158490936 -18483204 + L2 LINE L2 394 533 -2781 393 81 0 81 chrX 158492592 158492654 -18481486 - AluJ/FRAM SINE Alu -13 289 233 521 208 48 16 chrX 158492955 158493080 -18481060 - L1MEc LINE L1 -4391 2005 1877 1559 230 73 5 chrX 158493341 158493710 -18480430 - MSTD LTR MaLR -2 394 1 326 256 12 0 chrX 158493710 158493796 -18480344 + L1ME3A LINE L1 6078 6164 -6 4603 260 24 15 chrX 158494001 158496923 -18477217 + L1PA13 LINE L1 1 3392 -3405 4643 215 27 1 chrX 158496960 158498008 -18476132 + L1 LINE L1 4509 5583 -1214 * 20088 179 15 5 chrX 158497998 158502257 -18471883 - L1PA12 LINE L1 -2730 4854 533 1835 166 75 3 chrX 158502257 158502577 -18471563 + MER61A LTR ERV1 1 343 0 20088 179 15 5 chrX 158502577 158503116 -18471024 - L1PA12 LINE L1 -7051 533 1 684 241 57 25 chrX 158503133 158503378 -18470762 - L1MA7 LINE L1 -12 6279 6027 231 378 0 10 chrX 158503933 158504031 -18470109 - MIR SINE MIR -62 146 50 2424 85 0 3 chrX 158505418 158505723 -18468417 + AluY SINE Alu 1 304 -7 3740 252 38 58 chrX 158505849 158508022 -18466118 + L1PBa LINE L1 67 1644 -5219 379 257 164 13 chrX 158508272 158508424 -18465716 - MIR SINE MIR -30 232 58 191 282 127 36 chrX 158508917 158509027 -18465113 - MIR SINE MIR -86 176 57 432 294 32 35 chrX 158509519 158509749 -18464391 + MIR SINE MIR 30 251 -11 767 307 69 38 chrX 158509781 158510375 -18463765 - L2 LINE L2 -1 3312 2505 242 350 130 35 chrX 158510679 158511110 -18463030 - L3 LINE CR1 -796 781 310 3639 257 63 28 chrX 158511191 158512772 -18461368 - L1ME1 LINE L1 -4 6162 4460 1901 96 4 4 chrX 158512772 158513032 -18461108 + AluSx SINE Alu 36 295 -17 3639 257 63 28 chrX 158513032 158513931 -18460209 - L1ME1 LINE L1 -1706 4460 3594 1047 143 5 71 chrX 158513960 158514170 -18459970 - L1MA2 LINE L1 0 6304 6109 207 117 33 33 chrX 158514174 158514234 -18459906 + (TTAA)n Simple_repeat Simple_repeat 1 60 0 2792 122 22 4 chrX 158514238 158514304 -18459836 - L1MA2 LINE L1 -209 6095 6030 970 273 32 48 chrX 158514304 158514740 -18459400 - L1PA15 LINE L1 -144 6021 5593 21 36 0 0 chrX 158514804 158514832 -18459308 + AT_rich Low_complexity Low_complexity 1 28 0 355 248 80 35 chrX 158515023 158515090 -18459050 - MER5B DNA MER1_type -2 176 101 2257 260 36 12 chrX 158515090 158515729 -18458411 + MLT1E1 LTR MaLR 1 654 0 355 248 80 35 chrX 158515729 158515774 -18458366 - MER5B DNA MER1_type -77 101 59 684 99 0 10 chrX 158515777 158515878 -18458262 - AluSg/x SINE Alu -17 295 196 186 125 31 0 chrX 158515916 158515948 -18458192 + MER5B DNA MER1_type 1 33 -145 22 35 0 0 chrX 158516065 158516094 -18458046 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 158516296 158516317 -18457823 + AT_rich Low_complexity Low_complexity 1 21 0 823 261 17 0 chrX 158516691 158516871 -18457269 + MER5A DNA MER1_type 1 183 -6 299 301 34 67 chrX 158518141 158518410 -18455730 - ERVL LTR ERVL -431 5333 5074 306 232 21 32 chrX 158518676 158518771 -18455369 + HERVL LTR ERVL 3048 3141 -2513 838 176 0 20 chrX 158518983 158519136 -18455004 - MER3 DNA MER1_type -59 150 1 472 299 0 0 chrX 158519187 158519304 -18454836 + HERVL LTR ERVL 3352 3468 -2296 816 177 63 23 chrX 158519712 158519887 -18454253 + MSTD LTR MaLR 1 182 -214 2026 113 0 44 chrX 158520384 158520702 -18453438 - AluSg SINE Alu -6 304 1 6046 264 54 9 chrX 158520902 158523428 -18450712 - L1PBb LINE L1 -3113 4471 1735 3292 139 30 85 chrX 158523608 158524339 -18449801 - LTR8 LTR ERV1 0 691 1 520 281 53 89 chrX 158524339 158524620 -18449520 - L1PBb LINE L1 -5786 1799 1529 310 277 0 0 chrX 158524647 158524712 -18449428 - L1PBb LINE L1 -6367 1218 1154 1394 274 24 14 chrX 158525173 158525649 -18448491 - L1M2 LINE L1 -6475 1110 10 1911 199 28 2 chrX 158525715 158526225 -18447915 + L1MC/D LINE L1 5140 5660 -684 688 182 35 41 chrX 158526221 158526391 -18447749 - L1M4 LINE L1 -1947 4199 4031 * 2632 236 85 30 chrX 158526532 158527554 -18446586 - L1M4 LINE L1 -2090 4056 2979 965 264 44 19 chrX 158527596 158528276 -18445864 - L1MEc LINE L1 -5160 1236 491 23 0 0 0 chrX 158529408 158529431 -18444709 + AT_rich Low_complexity Low_complexity 1 23 0 3422 165 68 17 chrX 158529503 158530195 -18443945 + LTR8A LTR ERV1 1 727 0 256 253 265 0 chrX 158530251 158530334 -18443806 + MIR SINE MIR 66 170 -92 194 281 98 78 chrX 158530730 158530883 -18443257 - L2 LINE L2 -182 3090 2935 214 348 45 0 chrX 158531430 158531519 -18442621 + MIR3 SINE MIR 87 179 -29 345 390 68 33 chrX 158532020 158532564 -18441576 - L2 LINE L2 -355 2959 2397 338 331 43 33 chrX 158533092 158533276 -18440864 + L2 LINE L2 2179 2364 -950 613 288 23 42 chrX 158533748 158533963 -18440177 + MIR SINE MIR 10 220 -42 21 36 0 0 chrX 158533982 158534010 -18440130 + AT_rich Low_complexity Low_complexity 1 28 0 1598 308 75 47 chrX 158534377 158535553 -18438587 + ERVL LTR ERVL 4237 5445 -319 2393 86 0 6 chrX 158535801 158536114 -18438026 - AluSx SINE Alu -1 311 1 189 0 0 0 chrX 158537147 158537168 -18436972 + (TC)n Simple_repeat Simple_repeat 1 21 0 1625 273 71 15 chrX 158537620 158538097 -18436043 - LTR40a LTR ERVL -15 504 1 360 0 0 0 chrX 158538603 158538643 -18435497 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 255 0 0 chrX 158538669 158538716 -18435424 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2789 91 3 0 chrX 158539480 158539854 -18434286 - THE1C LTR MaLR 0 375 1 10640 91 37 37 chrX 158539854 158541433 -18432707 - THE1C-int LTR MaLR 0 1580 2 2610 111 11 0 chrX 158541434 158541805 -18432335 - THE1C LTR MaLR 0 375 1 626 206 10 93 chrX 158541903 158541982 -18432158 + MIR SINE MIR 45 129 -133 1606 184 0 38 chrX 158541982 158542297 -18431843 - AluJo SINE Alu -9 303 1 626 206 10 93 chrX 158542297 158542421 -18431719 + MIR SINE MIR 129 231 -31 457 319 83 83 chrX 158542747 158543227 -18430913 + L2 LINE L2 2774 3253 -19 689 158 0 36 chrX 158543241 158543380 -18430760 + L1P LINE L1 4535 4668 -1478 957 139 0 6 chrX 158543382 158543540 -18430600 + L1PA16 LINE L1 6008 6164 -2 331 244 22 33 chrX 158543735 158543825 -18430315 - MIR SINE MIR -108 154 66 268 265 60 12 chrX 158543882 158543965 -18430175 + MIR SINE MIR 45 131 -131 365 259 35 24 chrX 158544224 158544347 -18429793 + MLT1H1 LTR MaLR 43 206 -343 261 146 0 0 chrX 158544487 158544535 -18429605 + (GA)n Simple_repeat Simple_repeat 1 48 0 600 242 101 28 chrX 158544550 158544798 -18429342 + MLT1H1 LTR MaLR 290 555 0 389 219 0 0 chrX 158546664 158546760 -18427380 + L1 LINE L1 3040 3135 -3011 * 390 151 0 0 chrX 158546756 158546829 -18427311 + L1MA9 LINE L1 6240 6312 0 244 154 36 55 chrX 158547080 158547141 -18426999 + (TA)n Simple_repeat Simple_repeat 2 63 -46 1932 107 44 4 chrX 158547141 158547432 -18426708 - AluSx SINE Alu 0 304 3 2229 101 0 3 chrX 158547434 158547730 -18426410 - AluSx SINE Alu -17 295 1 244 154 36 55 chrX 158547730 158547774 -18426366 + (TA)n Simple_repeat Simple_repeat 64 109 0 369 0 0 0 chrX 158547781 158547822 -18426318 + (TG)n Simple_repeat Simple_repeat 2 42 0 1926 153 0 3 chrX 158547825 158548119 -18426021 - AluJo SINE Alu -14 298 6 812 322 144 32 chrX 158548371 158548978 -18425162 + L2 LINE L2 2633 3310 -3 25 0 0 0 chrX 158549841 158549866 -18424274 + AT_rich Low_complexity Low_complexity 1 25 0 372 366 14 7 chrX 158550000 158550142 -18423998 + MIR3 SINE MIR 34 176 -32 306 295 13 0 chrX 158550341 158550419 -18423721 - MIR SINE MIR -165 97 19 708 169 108 0 chrX 158550531 158550661 -18423479 + Tigger4(Zombi) DNA MER2_type 1 144 -2587 * 5100 119 10 49 chrX 158550660 158551556 -18422584 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 1327 293 95 27 chrX 158551729 158552111 -18422029 + L2 LINE L2 1285 1727 -1587 2335 94 3 0 chrX 158552111 158552408 -18421732 - AluSp SINE Alu -15 298 1 1327 293 95 27 chrX 158552408 158552647 -18421493 + L2 LINE L2 1727 1948 -1366 3047 166 50 0 chrX 158552654 158553255 -18420885 - L1MA9 LINE L1 -2 6310 5680 2155 82 55 3 chrX 158553255 158553548 -18420592 + AluY SINE Alu 1 308 -3 2320 182 26 18 chrX 158553566 158553980 -18420160 + L1M2 LINE L1 4800 5209 -1103 6253 79 16 25 chrX 158553980 158555023 -18419117 + L1PA10 LINE L1 5123 6166 -2 2320 182 26 18 chrX 158555023 158555432 -18418708 + L1M2 LINE L1 5209 5632 -680 1024 311 99 34 chrX 158555434 158556206 -18417934 + L2 LINE L2 1942 2964 -349 6652 52 13 5 chrX 158556209 158557056 -18417084 - L1PA6 LINE L1 -2 6152 5299 648 303 19 69 chrX 158557056 158557419 -18416721 + L2 LINE L2 2962 3306 -7 2295 76 3 13 chrX 158558093 158558407 -18415733 - AluY SINE Alu 0 311 1 880 275 63 38 chrX 158558456 158558852 -18415288 - L1MDa LINE L1 -6127 413 8 2676 20 0 0 chrX 158559990 158560287 -18413853 + AluYa5 SINE Alu 1 297 -14 441 266 86 0 chrX 158560746 158560874 -18413266 - MIR3 SINE MIR -28 180 42 617 236 103 29 chrX 158560906 158561080 -18413060 - MER5A DNA MER1_type -1 188 2 4807 164 16 11 chrX 158561131 158562020 -18412120 - L1MB3 LINE L1 -1 6182 5290 2318 107 0 0 chrX 158562038 158562346 -18411794 - AluSg SINE Alu -2 308 1 29 28 0 0 chrX 158562365 158562401 -18411739 + AT_rich Low_complexity Low_complexity 1 36 0 839 253 142 4 chrX 158563727 158564370 -18409770 + L1MB5 LINE L1 5362 6132 -38 4038 201 28 54 chrX 158566214 158566729 -18407411 + L1MD1 LINE L1 4951 5478 -764 2195 104 3 3 chrX 158566729 158567051 -18407089 + AluSp SINE Alu 2 313 0 4038 201 28 54 chrX 158567051 158567817 -18406323 + L1MD1 LINE L1 5478 6214 -28 2463 60 0 7 chrX 158567967 158568269 -18405871 + AluY SINE Alu 1 300 -11 2043 129 153 5 chrX 158568438 158568811 -18405329 + MSTA LTR MaLR 1 428 0 1036 225 86 7 chrX 158568921 158569004 -18405136 + L1M1 LINE L1 11 86 -7479 183 42 0 0 chrX 158569004 158569028 -18405112 + (CA)n Simple_repeat Simple_repeat 2 25 0 1036 225 86 7 chrX 158569028 158569383 -18404757 + L1M1 LINE L1 86 531 -7034 976 167 52 0 chrX 158569383 158569557 -18404583 + MSTA LTR MaLR 246 428 0 6124 116 52 9 chrX 158569563 158570611 -18403529 + L1MA2 LINE L1 5213 6304 0 640 341 48 19 chrX 158571331 158571645 -18402495 + LTR16C LTR ERVL 168 490 -1 283 250 12 0 chrX 158571751 158571835 -18402305 + L1PB4 LINE L1 6070 6154 -2 1301 57 108 0 chrX 158572607 158572783 -18401357 - MER4E LTR ERV1 0 766 572 514 133 133 9 chrX 158572783 158572896 -18401244 + FLAM_C SINE Alu 1 127 -16 243 0 0 0 chrX 158572896 158572923 -18401217 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 4024 76 32 5 chrX 158572923 158573487 -18400653 - MER4E LTR ERV1 -187 579 1 5232 109 16 12 chrX 158573539 158574315 -18399825 - MER4E LTR ERV1 0 779 1 315 181 48 60 chrX 158575018 158575101 -18399039 - L1MC4 LINE L1 -1337 6705 6624 628 167 0 9 chrX 158575101 158575209 -18398931 - MER4B LTR ERV1 -293 317 211 578 35 83 35 chrX 158575218 158575526 -18398614 + (TA)n Simple_repeat Simple_repeat 1 322 0 1580 104 0 5 chrX 158575526 158575746 -18398394 - MER4B LTR ERV1 -391 219 1 10682 126 47 7 chrX 158575746 158577427 -18396713 - MER4B-int LTR ERV1 0 6758 5010 * 15612 126 90 47 chrX 158577424 158579425 -18394715 - MER4B-int LTR ERV1 -2276 4482 2293 1950 109 44 4 chrX 158579425 158579699 -18394441 + AluSc SINE Alu 4 288 -21 15612 126 90 47 chrX 158579699 158580880 -18393260 - MER4B-int LTR ERV1 -4465 2293 1164 2192 200 36 86 chrX 158580894 158581582 -18392558 - MER61E LTR ERV1 0 779 1 1860 168 45 22 chrX 158581582 158581982 -18392158 - MER4B-int LTR ERV1 -5593 1165 757 2888 124 19 14 chrX 158581986 158582577 -18391563 + MER4E LTR ERV1 1 761 -5 2063 186 16 0 chrX 158582584 158582950 -18391190 - MER4B-int LTR ERV1 -6004 754 383 727 172 53 18 chrX 158582964 158583133 -18391007 - MER4B-int LTR ERV1 -5159 1439 1265 2562 133 122 32 chrX 158583205 158583843 -18390297 - MER4B-int LTR ERV1 -5789 809 2 3364 116 47 67 chrX 158583847 158584370 -18389770 - MER4B LTR ERV1 0 610 101 1608 179 35 7 chrX 158584370 158584660 -18389480 - AluJb SINE Alu -14 298 1 3364 116 47 67 chrX 158584660 158584759 -18389381 - MER4B LTR ERV1 -509 101 1 528 284 74 79 chrX 158584847 158584983 -18389157 + L1MEd LINE L1 832 967 -5162 3946 28 45 0 chrX 158584983 158585452 -18388688 - LTR2B LTR ERV1 0 490 1 528 284 74 79 chrX 158585452 158585750 -18388390 + L1MEd LINE L1 967 1265 -4864 191 36 36 0 chrX 158585750 158585778 -18388362 + (TAA)n Simple_repeat Simple_repeat 1 29 0 528 284 74 79 chrX 158585778 158586063 -18388077 + L1MEd LINE L1 1265 1568 -4561 1617 273 71 15 chrX 158586546 158587022 -18387118 - LTR40a LTR ERVL -15 504 2 360 0 0 0 chrX 158587530 158587570 -18386570 + (CA)n Simple_repeat Simple_repeat 2 41 0 228 255 0 0 chrX 158587596 158587643 -18386497 + (CATA)n Simple_repeat Simple_repeat 2 48 0 2789 91 3 0 chrX 158588407 158588781 -18385359 - THE1C LTR MaLR 0 375 1 10628 92 37 37 chrX 158588781 158590360 -18383780 - THE1C-int LTR MaLR 0 1580 2 2610 111 11 0 chrX 158590361 158590732 -18383408 - THE1C LTR MaLR 0 375 1 626 206 10 93 chrX 158590830 158590909 -18383231 + MIR SINE MIR 45 129 -133 1606 184 0 38 chrX 158590909 158591224 -18382916 - AluJo SINE Alu -9 303 1 626 206 10 93 chrX 158591224 158591348 -18382792 + MIR SINE MIR 129 231 -31 457 319 83 83 chrX 158591675 158592155 -18381985 + L2 LINE L2 2774 3253 -19 689 158 0 36 chrX 158592169 158592308 -18381832 + L1P LINE L1 4535 4668 -1478 957 139 0 6 chrX 158592310 158592468 -18381672 + L1PA16 LINE L1 6008 6164 -2 331 244 22 33 chrX 158592663 158592753 -18381387 - MIR SINE MIR -108 154 66 243 289 60 12 chrX 158592810 158592893 -18381247 + MIR SINE MIR 45 131 -131 22 0 0 0 chrX 158592914 158592936 -18381204 + AT_rich Low_complexity Low_complexity 1 22 0 365 259 35 24 chrX 158593153 158593276 -18380864 + MLT1H1 LTR MaLR 43 206 -343 261 146 0 0 chrX 158593416 158593464 -18380676 + (GA)n Simple_repeat Simple_repeat 1 48 0 600 242 101 28 chrX 158593479 158593727 -18380413 + MLT1H1 LTR MaLR 290 555 0 389 219 0 0 chrX 158595593 158595689 -18378451 + L1 LINE L1 3040 3135 -3011 * 390 151 0 0 chrX 158595685 158595758 -18378382 + L1MA9 LINE L1 6240 6312 0 244 154 36 55 chrX 158596009 158596070 -18378070 + (TA)n Simple_repeat Simple_repeat 2 63 -46 1932 107 44 4 chrX 158596070 158596361 -18377779 - AluSx SINE Alu 0 304 3 2229 101 0 3 chrX 158596363 158596659 -18377481 - AluSx SINE Alu -17 295 1 244 154 36 55 chrX 158596659 158596703 -18377437 + (TA)n Simple_repeat Simple_repeat 64 109 0 369 0 0 0 chrX 158596710 158596751 -18377389 + (TG)n Simple_repeat Simple_repeat 2 42 0 1926 153 0 3 chrX 158596754 158597048 -18377092 - AluJo SINE Alu -14 298 6 812 322 144 32 chrX 158597297 158597904 -18376236 + L2 LINE L2 2633 3310 -3 25 0 0 0 chrX 158598767 158598792 -18375348 + AT_rich Low_complexity Low_complexity 1 25 0 372 366 14 7 chrX 158598926 158599068 -18375072 + MIR3 SINE MIR 34 176 -32 306 295 13 0 chrX 158599267 158599345 -18374795 - MIR SINE MIR -165 97 19 708 169 108 0 chrX 158599457 158599587 -18374553 + Tigger4(Zombi) DNA MER2_type 1 144 -2587 * 5100 119 10 49 chrX 158599586 158600482 -18373658 + Tigger4(Zombi) DNA MER2_type 1871 2731 0 1327 293 95 27 chrX 158600655 158601037 -18373103 + L2 LINE L2 1285 1727 -1587 2335 94 3 0 chrX 158601037 158601334 -18372806 - AluSp SINE Alu -15 298 1 1327 293 95 27 chrX 158601334 158601573 -18372567 + L2 LINE L2 1727 1948 -1366 3005 170 50 0 chrX 158601580 158602181 -18371959 - L1MA9 LINE L1 -2 6310 5680 2147 82 55 3 chrX 158602181 158602473 -18371667 + AluY SINE Alu 1 307 -4 2320 182 26 18 chrX 158602491 158602905 -18371235 + L1M2 LINE L1 4800 5209 -1103 6268 79 15 25 chrX 158602905 158603949 -18370191 + L1PA10 LINE L1 5123 6166 -2 2320 182 26 18 chrX 158603949 158604358 -18369782 + L1M2 LINE L1 5209 5632 -680 1024 311 99 34 chrX 158604360 158605132 -18369008 + L2 LINE L2 1942 2964 -349 6652 52 13 5 chrX 158605135 158605982 -18368158 - L1PA6 LINE L1 -2 6152 5299 648 303 19 69 chrX 158605982 158606345 -18367795 + L2 LINE L2 2962 3306 -7 2295 76 3 13 chrX 158607019 158607333 -18366807 - AluY SINE Alu 0 311 1 880 275 63 38 chrX 158607382 158607778 -18366362 - L1MDa LINE L1 -6127 413 8 2695 17 0 0 chrX 158608916 158609213 -18364927 + AluYa5 SINE Alu 1 297 -14 441 266 86 0 chrX 158609672 158609800 -18364340 - MIR3 SINE MIR -28 180 42 617 236 103 29 chrX 158609832 158610006 -18364134 - MER5A DNA MER1_type -1 188 2 4807 164 16 11 chrX 158610057 158610946 -18363194 - L1MB3 LINE L1 -1 6182 5290 1890 104 4 4 chrX 158610970 158611238 -18362902 - AluSx SINE Alu -9 303 36 1732 252 68 36 chrX 158611252 158612533 -18361607 + L1ME1 LINE L1 4534 5858 -308 3173 80 48 25 chrX 158612640 158613116 -18361024 + MER4E LTR ERV1 93 579 -187 2384 83 0 6 chrX 158613116 158613429 -18360711 - AluY SINE Alu 0 311 1 285 240 16 62 chrX 158613435 158613564 -18360576 - LTR27 LTR ERV1 -214 422 300 262 287 67 73 chrX 158614037 158614187 -18359953 + MER5A DNA MER1_type 34 182 -7 210 388 37 0 chrX 158614262 158614396 -18359744 + L2 LINE L2 2236 2374 -940 4153 197 38 21 chrX 158614590 158615426 -18358714 + MER21B LTR ERV1 13 862 -1 2643 159 16 21 chrX 158616109 158616626 -18357514 + L1MA5 LINE L1 5787 6300 0 309 283 78 36 chrX 158616628 158616794 -18357346 + HAL1 LINE L1 2335 2507 0 6474 144 31 8 chrX 158617207 158617656 -18356484 - Tigger1 DNA MER2_type 0 2418 1981 707 141 0 44 chrX 158617656 158617791 -18356349 - L1PA16 LINE L1 0 6166 6038 6474 144 31 8 chrX 158617791 158618442 -18355698 - Tigger1 DNA MER2_type -437 1981 1293 22 0 0 0 chrX 158619152 158619174 -18354966 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chrX 158619295 158619328 -18354812 + (TA)n Simple_repeat Simple_repeat 1 33 0 252 0 0 0 chrX 158619327 158619355 -18354785 + (CA)n Simple_repeat Simple_repeat 2 29 0 * 3304 145 0 6 chrX 158619587 158620133 -18354007 - L1MC1 LINE L1 -483 5850 5313 * 6036 146 12 16 chrX 158620131 158621265 -18352875 - L1MA5A LINE L1 -1 6296 5169 2751 84 0 0 chrX 158621265 158621620 -18352520 + THE1A LTR MaLR 1 355 0 1830 249 12 7 chrX 158621627 158622201 -18351939 - L1MC1 LINE L1 -824 5322 4746 22 35 0 0 chrX 158622208 158622237 -18351903 + AT_rich Low_complexity Low_complexity 1 29 0 1101 164 19 5 chrX 158622771 158622979 -18351161 - L1PA16 LINE L1 -9 6157 5947 235 270 0 0 chrX 158624094 158624157 -18349983 + MIR SINE MIR 156 218 -44 3869 140 19 0 chrX 158624588 158625237 -18348903 - L1MA4 LINE L1 -6 6294 5634 1271 147 5 4 chrX 158625237 158625475 -18348665 + L1MA4 LINE L1 5427 5660 -506 1557 244 52 40 chrX 158625550 158626053 -18348087 + MER74B LTR ERVL 79 587 -35 501 278 94 5 chrX 158626178 158626369 -18347771 + MLT1K LTR MaLR 375 582 -6 24 0 0 0 chrX 158627953 158627977 -18346163 + AT_rich Low_complexity Low_complexity 1 24 0 478 346 33 0 chrX 158629513 158629695 -18344445 + LTR16A LTR ERVL 30 217 -233 1681 213 19 139 chrX 158629706 158630409 -18343731 - L1M3e LINE L1 -6371 659 42 3411 278 90 42 chrX 158630415 158631874 -18342266 - L1M4b LINE L1 -5179 1680 163 4472 75 8 8 chrX 158631874 158632465 -18341675 + LTR10C LTR ERV1 1 591 0 3411 278 90 42 chrX 158632465 158632620 -18341520 - L1M4b LINE L1 -6696 163 17 240 100 0 0 chrX 158632668 158632708 -18341432 + (CA)n Simple_repeat Simple_repeat 2 41 0 301 279 107 0 chrX 158632729 158632851 -18341289 + MER112 DNA MER1_type 96 230 -30 2304 55 45 0 chrX 158634450 158634739 -18339401 - AluY SINE Alu -9 302 1 1720 129 0 0 chrX 158634891 158635146 -18338994 - AluSx SINE Alu 0 305 51 1341 88 16 10 chrX 158636207 158636399 -18337741 + AluY SINE Alu 109 301 -10 346 333 69 2 chrX 158636544 158636737 -18337403 + MIR SINE MIR 13 262 0 26 74 0 0 chrX 158636906 158636960 -18337180 + AT_rich Low_complexity Low_complexity 1 54 0 1903 133 73 14 chrX 158639522 158639876 -18334264 - THE1C LTR MaLR 0 375 1 1838 317 47 13 chrX 158640063 158640761 -18333379 - L2 LINE L2 -602 2712 1991 463 325 119 7 chrX 158640805 158641082 -18333058 - L2 LINE L2 -2566 748 441 1288 190 105 57 chrX 158641923 158642180 -18331960 + MER31B LTR ERV1 34 277 -266 4255 146 12 0 chrX 158642180 158642865 -18331275 - L1PA15 LINE L1 -2 6163 5471 1288 190 105 57 chrX 158642865 158643012 -18331128 + MER31B LTR ERV1 277 541 -2 23 0 0 0 chrX 158643200 158643223 -18330917 + AT_rich Low_complexity Low_complexity 1 23 0 2193 95 0 3 chrX 158643442 158643766 -18330374 + AluSx SINE Alu 1 323 0 808 328 17 20 chrX 158644635 158644931 -18329209 + MLT1H1 LTR MaLR 16 310 -245 1636 157 178 9 chrX 158645380 158645711 -18328429 - MSTA LTR MaLR 0 428 42 700 159 8 30 chrX 158645811 158645943 -18328197 + MER21A LTR ERV1 137 265 -666 2670 166 36 57 chrX 158645956 158646487 -18327653 + MER21A LTR ERV1 395 914 -17 28 0 0 0 chrX 158646513 158646541 -18327599 + AT_rich Low_complexity Low_complexity 1 28 0 217 209 30 30 chrX 158647313 158647380 -18326760 + (TAAA)n Simple_repeat Simple_repeat 4 70 0 25 51 0 0 chrX 158647817 158647856 -18326284 + AT_rich Low_complexity Low_complexity 1 39 0 2536 68 0 0 chrX 158648106 158648417 -18325723 - AluY SINE Alu 0 311 1 1543 188 17 20 chrX 158648418 158648716 -18325424 - AluJo SINE Alu -15 297 1 34 0 0 0 chrX 158648912 158648946 -18325194 + AT_rich Low_complexity Low_complexity 1 34 0 2323 84 0 0 chrX 158648951 158649237 -18324903 - AluSc SINE Alu -21 288 3 23 33 0 0 chrX 158649239 158649269 -18324871 + AT_rich Low_complexity Low_complexity 1 30 0 342 0 0 0 chrX 158650410 158650448 -18323692 + (CA)n Simple_repeat Simple_repeat 2 39 0 4297 154 11 14 chrX 158650457 158651170 -18322970 - MER50 LTR ERV1 -23 711 1 383 93 0 0 chrX 158651331 158651385 -18322755 - MSTA LTR MaLR -374 54 1 2198 68 0 0 chrX 158652561 158652827 -18321313 - AluY SINE Alu -11 300 35 512 354 43 50 chrX 158653602 158653882 -18320258 - L2 LINE L2 -2 3270 2993 328 335 7 52 chrX 158653897 158654052 -18320088 + LTR16A LTR ERVL 1 148 -302 3733 190 50 1 chrX 158654054 158654813 -18319327 - L1 LINE L1 -1962 4184 3389 2672 155 26 0 chrX 158654813 158655239 -18318901 + Tigger3(Golem) DNA MER2_type 2593 3029 0 363 366 43 39 chrX 158655370 158655627 -18318513 + L1MDa LINE L1 1 258 -6282 606 268 117 62 chrX 158656221 158656300 -18317840 + L1MDa LINE L1 916 989 -5627 2592 43 0 0 chrX 158656300 158656602 -18317538 - AluY SINE Alu -9 302 1 606 268 117 62 chrX 158656602 158656956 -18317184 + L1MDa LINE L1 989 1322 -5294 2216 91 0 3 chrX 158656956 158657294 -18316846 + AluY SINE Alu 1 337 0 606 268 117 62 chrX 158657294 158657579 -18316561 + L1MDa LINE L1 1322 1683 -4933 225 132 0 0 chrX 158657635 158657673 -18316467 + (TA)n Simple_repeat Simple_repeat 2 39 0 245 197 13 0 chrX 158657753 158657829 -18316311 + GA-rich Low_complexity Low_complexity 2 78 0 219 69 0 0 chrX 158657827 158657856 -18316284 + (CAA)n Simple_repeat Simple_repeat 2 30 0 * 2053 132 3 0 chrX 158657901 158658189 -18315951 + AluSq SINE Alu 3 291 -22 2378 233 34 35 chrX 158658249 158658548 -18315592 + L1M4 LINE L1 4442 4740 -1406 359 177 52 10 chrX 158658548 158658642 -18315498 + L1MA6 LINE L1 6201 6300 0 2378 233 34 35 chrX 158658642 158659102 -18315038 + L1M4 LINE L1 4740 5200 -946 2017 76 0 36 chrX 158659177 158659452 -18314688 - AluSg SINE Alu -45 265 1 4903 102 31 1 chrX 158659536 158660248 -18313892 - L1PA13 LINE L1 -1 6162 5430 2924 119 29 8 chrX 158660248 158660724 -18313416 + L1PA13 LINE L1 5668 6155 -8 3640 225 8 27 chrX 158660730 158661619 -18312521 + L1P LINE L1 3773 4644 -1502 1242 251 78 15 chrX 158661620 158662015 -18312125 - L1PA13 LINE L1 -5143 1644 1225 204 125 0 0 chrX 158662275 158662307 -18311833 + (CATA)n Simple_repeat Simple_repeat 4 35 0 21 0 0 0 chrX 158662324 158662345 -18311795 + AT_rich Low_complexity Low_complexity 1 21 0 2447 62 0 13 chrX 158664261 158664565 -18309575 - AluY SINE Alu -3 308 9 752 207 89 0 chrX 158665630 158665881 -18308259 + L1MA9 LINE L1 5921 6290 -22 22 0 0 0 chrX 158665881 158665903 -18308237 + AT_rich Low_complexity Low_complexity 1 22 0 2400 78 10 0 chrX 158665963 158666258 -18307882 - AluY SINE Alu -13 298 1 338 329 151 23 chrX 158666358 158666577 -18307563 + MIR SINE MIR 10 256 -6 602 138 69 6 chrX 158666860 158667020 -18307120 + CT-rich Low_complexity Low_complexity 4 173 0 946 217 60 8 chrX 158667084 158667333 -18306807 - L1ME2 LINE L1 -146 6018 5757 2277 90 7 0 chrX 158667336 158667635 -18306505 - AluSg SINE Alu -9 301 1 801 257 48 0 chrX 158667812 158668022 -18306118 + MER58A DNA MER1_type 5 224 0 2536 181 67 109 chrX 158668094 158668861 -18305279 + MER50 LTR ERV1 1 734 0 2492 183 151 32 chrX 158669304 158669922 -18304218 - LTR8 LTR ERV1 0 691 1 252 339 17 26 chrX 158671283 158671398 -18302742 + L2 LINE L2 3158 3271 -1 1459 264 91 29 chrX 158671413 158671928 -18302212 - MLT1E LTR MaLR 0 593 47 955 203 81 88 chrX 158671977 158672410 -18301730 + LTR7 LTR ERV1 21 450 0 3741 81 41 30 chrX 158672590 158672606 -18301534 + MER4E LTR ERV1 1 15 -751 2179 113 0 3 chrX 158672606 158672898 -18301242 - AluSq SINE Alu -22 291 1 3741 81 41 30 chrX 158672898 158673447 -18300693 + MER4E LTR ERV1 15 572 -194 2616 41 0 10 chrX 158673455 158673769 -18300371 - AluY SINE Alu 0 311 1 374 216 22 52 chrX 158673769 158673903 -18300237 - LTR27 LTR ERV1 -207 429 300 765 237 17 11 chrX 158673979 158674156 -18299984 - LTR28 LTR ERV1 -842 178 1 1289 166 20 56 chrX 158674335 158674764 -18299376 + pTR5 LTR ERV1 738 1200 -1238 492 18 0 0 chrX 158675075 158675132 -18299008 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2971 165 31 16 chrX 158675132 158675646 -18298494 - LTR26B LTR ERV1 -7 524 3 270 0 0 0 chrX 158675647 158675677 -18298463 + (TG)n Simple_repeat Simple_repeat 2 31 0 550 202 26 9 chrX 158677143 158677257 -18296883 - MLT1J LTR MaLR -280 231 116 338 296 51 87 chrX 158677304 158677557 -18296583 - MIR SINE MIR -13 249 6 23 33 0 0 chrX 158678963 158678993 -18295147 + AT_rich Low_complexity Low_complexity 1 30 0 208 341 88 22 chrX 158681158 158681249 -18292891 - L2 LINE L2 -6 3266 3170 594 319 86 13 chrX 158681819 158682123 -18292017 + L2 LINE L2 1806 2131 -1183 2052 96 37 0 chrX 158682241 158682540 -18291600 - AluSp SINE Alu 0 309 1 662 295 5 5 chrX 158682546 158682746 -18291394 + MIR SINE MIR 63 262 0 2319 83 0 17 chrX 158683078 158683380 -18290760 - AluY SINE Alu -14 297 1 29 78 0 0 chrX 158683873 158683937 -18290203 + AT_rich Low_complexity Low_complexity 1 64 0 2319 94 0 0 chrX 158685721 158686018 -18288122 + AluSg SINE Alu 1 297 -13 5121 128 69 9 chrX 158686408 158687267 -18286873 + L1M1 LINE L1 1700 2609 -4956 3910 78 238 33 chrX 158687283 158687973 -18286167 + pTR5 LTR ERV1 1195 2025 -413 345 245 10 0 chrX 158687973 158688071 -18286069 + LTR30 LTR ERV1 544 642 -80 975 92 0 0 chrX 158688071 158688201 -18285939 + pTR5 LTR ERV1 66 195 -2243 1111 38 8 0 chrX 158688672 158688803 -18285337 + AluSq/x SINE Alu 1 132 -181 6633 192 17 70 chrX 158688930 158690164 -18283976 - L1MA3 LINE L1 0 6305 5007 1792 171 0 25 chrX 158690164 158690480 -18283660 - AluJb SINE Alu -4 308 1 6633 192 17 70 chrX 158690480 158691142 -18282998 - L1MA3 LINE L1 -1298 5007 4311 2376 85 0 22 chrX 158691142 158691459 -18282681 - AluY SINE Alu -1 310 1 6633 192 17 70 chrX 158691459 158692496 -18281644 - L1MA3 LINE L1 -1994 4311 3542 7928 141 43 13 chrX 158692497 158693700 -18280440 + L1P3 LINE L1 3 1286 -4876 189 74 0 0 chrX 158693700 158693727 -18280413 + (CAA)n Simple_repeat Simple_repeat 1 27 0 7928 141 43 13 chrX 158693727 158693875 -18280265 + L1P3 LINE L1 1286 1428 -4734 1097 192 32 32 chrX 158693986 158694236 -18279904 - MER82 DNA MER2_type -403 250 1 1671 254 59 117 chrX 158694239 158694348 -18279792 - L1MD3 LINE L1 -746 7249 7135 2547 64 3 0 chrX 158694348 158694659 -18279481 - AluSx SINE Alu 0 312 1 1671 254 59 117 chrX 158694659 158695744 -18278396 - L1MD3 LINE L1 -860 7135 6125 1322 270 109 19 chrX 158695811 158695929 -18278211 - L1MCa LINE L1 -4544 1882 1776 342 0 0 0 chrX 158695929 158695967 -18278173 + (TG)n Simple_repeat Simple_repeat 2 39 0 1322 270 109 19 chrX 158695967 158696671 -18277469 - L1MCa LINE L1 -4650 1776 842 1061 167 17 0 chrX 158696943 158697117 -18277023 + MSTD LTR MaLR 220 396 0 413 261 23 47 chrX 158697379 158697594 -18276546 + L1M4 LINE L1 2220 2429 -3717 3068 255 81 10 chrX 158697610 158698000 -18276140 - L1 LINE L1 -1519 4627 4266 2348 91 3 0 chrX 158698000 158698297 -18275843 - AluSp SINE Alu -15 298 1 3068 255 81 10 chrX 158698297 158699443 -18274697 - L1 LINE L1 -1880 4266 2865 8189 166 7 29 chrX 158699444 158702120 -18272020 + L1P3 LINE L1 169 2850 -3611 268 296 25 12 chrX 158702248 158702329 -18271811 - L2 LINE L2 -1890 1424 1343 348 203 0 0 chrX 158702440 158702514 -18271626 + L1P LINE L1 2024 2097 -4049 2262 118 0 0 chrX 158703063 158703360 -18270780 + AluSq SINE Alu 3 299 -14 22 94 0 0 chrX 158703948 158704012 -18270128 + AT_rich Low_complexity Low_complexity 1 64 0 306 390 6 12 chrX 158704450 158704614 -18269526 + L1PA13 LINE L1 1358 1520 -5267 500 324 33 17 chrX 158705509 158705750 -18268390 + L1PA13 LINE L1 1510 1754 -5033 2285 114 0 0 chrX 158705751 158706058 -18268082 + AluSx SINE Alu 6 312 0 734 102 8 0 chrX 158706067 158706185 -18267955 + (GGAAA)n Simple_repeat Simple_repeat 2 120 0 2933 196 105 14 chrX 158707291 158707985 -18266155 - L1MB5 LINE L1 -7 6167 5411 1151 217 78 45 chrX 158707998 158708357 -18265783 - L1MB5 LINE L1 -897 5249 4879 294 125 0 0 chrX 158708359 158708407 -18265733 + (TC)n Simple_repeat Simple_repeat 1 48 0 187 308 38 75 chrX 158708440 158708573 -18265567 + L2 LINE L2 2937 3064 -208 189 171 0 0 chrX 158708836 158708871 -18265269 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chrX 158708894 158708917 -18265223 + (TG)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chrX 158708920 158708940 -18265200 + (GA)n Simple_repeat Simple_repeat 2 21 0 24 53 0 0 chrX 158710423 158710461 -18263679 + AT_rich Low_complexity Low_complexity 1 38 0 1115 218 14 0 chrX 158710557 158710777 -18263363 + MER58A DNA MER1_type 2 224 0 22 0 0 0 chrX 158711562 158711584 -18262556 + AT_rich Low_complexity Low_complexity 1 22 0 295 344 61 24 chrX 158711770 158712017 -18262123 - L3 LINE CR1 -48 1529 1274 1519 178 45 75 chrX 158712325 158712701 -18261439 - MLT1A1 LTR MaLR 0 365 1 1997 178 28 0 chrX 158712701 158713056 -18261084 - MLT1A1-int LTR MaLR 0 1735 1371 1927 99 0 0 chrX 158713062 158713305 -18260835 - AluSg SINE Alu -67 243 1 3926 251 43 44 chrX 158713305 158713846 -18260294 - L1 LINE L1 -2684 4881 4341 2400 78 0 3 chrX 158713846 158714142 -18259998 - AluY SINE Alu -16 295 1 3926 251 43 44 chrX 158714142 158715336 -18258804 - L1 LINE L1 -3224 4341 3137 2318 80 33 0 chrX 158715336 158715637 -18258503 - AluY SINE Alu 0 311 1 3926 251 43 44 chrX 158715637 158716438 -18257702 - L1 LINE L1 -4428 3137 2337 2158 121 7 0 chrX 158716441 158716748 -18257392 + AluSc SINE Alu 1 309 0 639 378 32 26 chrX 158716755 158717218 -18256922 + L1PA13 LINE L1 2 467 -6320 1894 169 125 10 chrX 158717365 158717749 -18256391 + MSTA LTR MaLR 1 428 0 198 103 0 0 chrX 158718598 158718627 -18255513 + (A)n Simple_repeat Simple_repeat 1 29 0 2007 100 64 4 chrX 158718789 158719069 -18255071 + AluSg SINE Alu 1 297 -13 391 255 174 24 chrX 158719074 158719396 -18254744 - MLT1L LTR MaLR -143 472 23 339 305 8 8 chrX 158719745 158719873 -18254267 + LTR67 LTR ERVL 425 552 -5 3234 158 6 6 chrX 158721300 158721850 -18252290 - L1PA15 LINE L1 0 6165 5616 3026 181 33 76 chrX 158721874 158723166 -18250974 + L1P4 LINE L1 4369 5589 -576 336 211 58 58 chrX 158723464 158723568 -18250572 + MIR3 SINE MIR 90 193 -15 292 335 112 12 chrX 158724242 158724403 -18249737 + MIR SINE MIR 35 211 -51 223 262 41 8 chrX 158724699 158724821 -18249319 + (TA)n Simple_repeat Simple_repeat 2 127 0 562 303 47 25 chrX 158724854 158725171 -18248969 - L1ME LINE L1 -414 5707 5384 24 0 0 0 chrX 158725302 158725326 -18248814 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chrX 158725345 158725371 -18248769 + AT_rich Low_complexity Low_complexity 1 26 0 2097 194 60 2 chrX 158725539 158725937 -18248203 + MSTB LTR MaLR 2 422 -4 2532 210 2 26 chrX 158725942 158726290 -18247850 + MSTB-int LTR MaLR 2 334 -1317 2257 112 7 0 chrX 158726290 158726595 -18247545 + AluSp SINE Alu 1 307 -6 2532 210 2 26 chrX 158726595 158726788 -18247352 + MSTB-int LTR MaLR 334 530 -1121 2280 113 6 38 chrX 158726796 158727142 -18246998 - THE1B LTR MaLR 0 364 30 1630 240 3 9 chrX 158727142 158727488 -18246652 + MSTB-int LTR MaLR 552 895 -756 592 109 11 0 chrX 158727488 158727580 -18246560 + AluSp/q SINE Alu 217 309 -4 877 252 0 0 chrX 158727580 158727790 -18246350 + MSTB-int LTR MaLR 338 547 -1104 1798 236 187 11 chrX 158727819 158728354 -18245786 + MSTB-int LTR MaLR 839 1467 -113 25 0 0 0 chrX 158728391 158728416 -18245724 + AT_rich Low_complexity Low_complexity 1 25 0 2321 70 0 3 chrX 158728852 158729137 -18245003 + AluY SINE Alu 1 284 -27 23 54 0 0 chrX 158729410 158729447 -18244693 + AT_rich Low_complexity Low_complexity 1 37 0 876 317 155 9 chrX 158730189 158730655 -18243485 + MLT1G1 LTR MaLR 10 584 -11 41 21 0 0 chrX 158730767 158730815 -18243325 + AT_rich Low_complexity Low_complexity 1 48 0 1290 140 26 52 chrX 158730982 158731022 -18243118 - MER44D DNA MER2_type -1957 534 494 2600 100 5 21 chrX 158731022 158731403 -18242737 - THE1C LTR MaLR 0 375 1 1290 140 26 52 chrX 158731403 158731633 -18242507 - MER44D DNA MER2_type -1997 494 1 385 272 160 0 chrX 158731719 158731888 -18242252 - MLT1H1 LTR MaLR 0 567 372 624 248 105 39 chrX 158731906 158732258 -18241882 - MSTB2 LTR MaLR 0 457 11 604 262 49 79 chrX 158732271 158732657 -18241483 - MLT1H1 LTR MaLR -214 376 1 25 31 0 0 chrX 158732695 158732727 -18241413 + AT_rich Low_complexity Low_complexity 1 32 0 1901 143 34 3 chrX 158733097 158733418 -18240722 - HSMAR2 DNA Mariner -2 1300 970 510 113 45 38 chrX 158733421 158733554 -18240586 + CT-rich Low_complexity Low_complexity 2 135 0 1897 132 35 0 chrX 158733566 158733854 -18240286 - AluSx SINE Alu -12 300 3 3055 159 10 33 chrX 158733881 158734796 -18239344 - HSMAR2 DNA Mariner -334 968 2 2108 123 3 23 chrX 158735283 158735593 -18238547 + AluSx SINE Alu 1 304 -8 22 0 0 0 chrX 158736827 158736849 -18237291 + AT_rich Low_complexity Low_complexity 1 22 0 314 317 117 8 chrX 158736896 158737016 -18237124 + L2 LINE L2 3134 3266 -6 2443 147 2 5 chrX 158737267 158737681 -18236459 - L1PA16 LINE L1 -9 6157 5745 1007 316 17 25 chrX 158737819 158738293 -18235847 + L2 LINE L2 25 568 -2746 1537 318 90 42 chrX 158738293 158738793 -18235347 + L2 LINE L2 1995 2469 -844 2160 108 3 0 chrX 158738793 158739090 -18235050 - AluSc SINE Alu -11 298 1 1537 318 90 42 chrX 158739090 158739371 -18234769 + L2 LINE L2 2469 2735 -578 5050 116 25 5 chrX 158739371 158740133 -18234007 + MER4E LTR ERV1 3 779 0 1537 318 90 42 chrX 158740133 158740371 -18233769 + L2 LINE L2 2735 2960 -353 2371 77 3 22 chrX 158740371 158740684 -18233456 + AluSp SINE Alu 1 307 -6 1537 318 90 42 chrX 158740684 158740922 -18233218 + L2 LINE L2 2960 3312 -1 182 292 214 0 chrX 158741072 158741161 -18232979 - L2 LINE L2 -1 3271 3164 36 40 0 0 chrX 158741221 158741271 -18232869 + AT_rich Low_complexity Low_complexity 1 50 0 6745 158 38 13 chrX 158741434 158743398 -18230742 + L1PA11 LINE L1 4196 6173 -1 663 224 89 12 chrX 158744373 158744555 -18229585 + MIR SINE MIR 9 197 -65 25 31 0 0 chrX 158744595 158744627 -18229513 + AT_rich Low_complexity Low_complexity 1 32 0 318 310 13 26 chrX 158745908 158746063 -18228077 + L1MC4 LINE L1 7890 8042 0 413 88 0 29 chrX 158746218 158746286 -18227854 + (CAGA)n Simple_repeat Simple_repeat 1 66 0 1039 195 41 5 chrX 158746287 158746482 -18227658 - MSTB LTR MaLR 0 426 225 3568 257 40 17 chrX 158746761 158748333 -18225807 + L1PA13 LINE L1 30 2084 -4703 4573 150 18 0 chrX 158748341 158749066 -18225074 - L1PBb LINE L1 -5267 1596 859 767 289 44 7 chrX 158749063 158749361 -18224779 - L1PBb LINE L1 -6552 311 3 * 482 274 93 26 chrX 158749387 158749657 -18224483 + HAL1 LINE L1 1389 1676 -831 739 319 42 0 chrX 158749818 158750056 -18224084 - L2 LINE L2 -1342 1972 1725 257 313 119 23 chrX 158750055 158750231 -18223909 + L2 LINE L2 3120 3312 -1 * 228 245 9 47 chrX 158750289 158750395 -18223745 + HAL1 LINE L1 2246 2347 -160 245 286 54 27 chrX 158750664 158750776 -18223364 - MARNA DNA Mariner -399 187 73 23 0 0 0 chrX 158751546 158751569 -18222571 + AT_rich Low_complexity Low_complexity 1 23 0 2102 104 0 41 chrX 158751731 158752047 -18222093 + AluSg SINE Alu 1 303 -7 953 203 98 39 chrX 158752188 158752450 -18221690 + MER33 DNA MER1_type 2 286 -2299 2542 62 0 0 chrX 158752450 158752758 -18221382 + AluY SINE Alu 1 308 -3 953 203 98 39 chrX 158752758 158752800 -18221340 + MER33 DNA MER1_type 286 324 0 400 300 54 85 chrX 158753296 158753450 -18220690 + L2 LINE L2 2564 2721 -593 2294 85 0 3 chrX 158753450 158753745 -18220395 + AluSc SINE Alu 1 294 -15 400 300 54 85 chrX 158753745 158754000 -18220140 + L2 LINE L2 2721 2960 -354 986 238 101 30 chrX 158755090 158755456 -18218684 + MLT1J2 LTR MaLR 59 450 0 2504 27 0 0 chrX 158755550 158755843 -18218297 + L1PA4 LINE L1 5855 6147 -8 452 305 14 35 chrX 158755900 158756041 -18218099 + L2 LINE L2 3175 3312 -1 189 167 0 0 chrX 158756092 158756146 -18217994 + (TA)n Simple_repeat Simple_repeat 1 54 0 279 0 0 0 chrX 158757175 158757206 -18216934 + (TG)n Simple_repeat Simple_repeat 2 32 0 2217 115 0 0 chrX 158757823 158758119 -18216021 - AluSg SINE Alu -14 296 1 300 250 102 0 chrX 158758595 158758683 -18215457 + L1MC4 LINE L1 6607 6703 -1339 2384 89 0 10 chrX 158759231 158759544 -18214596 - AluSg SINE Alu 0 310 1 1952 223 86 4 chrX 158759851 158760318 -18213822 + MLT1D LTR MaLR 1 505 0 4267 167 18 18 chrX 158761027 158761800 -18212340 + MER21A-int LTR ERV1 3419 4191 0 419 184 40 17 chrX 158761820 158761994 -18212146 + (TA)n Simple_repeat Simple_repeat 1 178 0 1484 162 37 5 chrX 158762002 158762440 -18211700 + MER21A LTR ERV1 16 487 -376 2312 83 3 3 chrX 158762440 158762742 -18211398 + AluY SINE Alu 1 302 -9 23 0 0 0 chrX 158762819 158762842 -18211298 + AT_rich Low_complexity Low_complexity 1 23 0 1961 154 0 3 chrX 158763027 158763338 -18210802 + AluJb SINE Alu 1 310 -2 2270 246 73 18 chrX 158763679 158764464 -18209676 - MER69 DNA AcHobo 0 2526 1689 650 183 30 23 chrX 158764464 158764595 -18209545 - FLAM_C SINE Alu -1 132 1 2270 246 73 18 chrX 158764595 158764652 -18209488 - MER69 DNA AcHobo -837 1689 1637 732 147 1 7 chrX 158764673 158764803 -18209337 - L1MA9 LINE L1 -213 5951 5828 463 151 19 145 chrX 158764811 158764970 -18209170 + L1MA9 LINE L1 5959 6097 -215 313 202 18 64 chrX 158764974 158765083 -18209057 - MER69 DNA AcHobo -918 1608 1505 1215 250 7 3 chrX 158765109 158765409 -18208731 + L1 LINE L1 2535 2835 -3311 829 194 131 84 chrX 158765418 158765785 -18208355 + LTR7 LTR ERV1 34 417 -33 1725 185 129 29 chrX 158765798 158766215 -18207925 + HERVH LTR ERV1 1 459 -7254 6231 206 26 49 chrX 158766273 158768523 -18205617 + HERVH LTR ERV1 590 2658 -4028 2316 225 17 29 chrX 158768525 158769107 -18205033 + L1MCb LINE L1 575 1149 -4896 275 297 35 104 chrX 158769433 158769635 -18204505 + L2 LINE L2 344 531 -2783 258 256 78 22 chrX 158769638 158769728 -18204412 + L1MC3 LINE L1 5502 5596 -525 24 0 0 0 chrX 158769790 158769814 -18204326 + AT_rich Low_complexity Low_complexity 1 24 0 272 256 98 0 chrX 158769882 158769964 -18204176 + L1MC3 LINE L1 5759 5848 -1960 932 107 40 0 chrX 158769984 158770134 -18204006 - L1MA9 LINE L1 -1 6311 6156 25 0 0 0 chrX 158770401 158770426 -18203714 + AT_rich Low_complexity Low_complexity 1 25 0 238 292 31 21 chrX 158770461 158770557 -18203583 + L2 LINE L2 565 661 -2653 2384 84 3 7 chrX 158770987 158771297 -18202843 + AluSc SINE Alu 1 309 0 3475 231 132 56 chrX 158772424 158774012 -18200128 + L1MCa LINE L1 21 1815 -4611 572 257 53 15 chrX 158774017 158774218 -18199922 + L1MC3 LINE L1 6014 6223 -1558 1535 150 39 39 chrX 158774218 158774579 -18199561 + L1MA6 LINE L1 5940 6300 0 1981 105 8 0 chrX 158774702 158774968 -18199172 - AluSp SINE Alu -45 268 1 314 347 58 33 chrX 158775155 158775429 -18198711 + L1M3 LINE L1 3904 4184 -1962 1722 173 13 21 chrX 158775441 158775570 -18198570 - L1 LINE L1 -1697 4449 4320 2563 59 0 0 chrX 158775570 158775875 -18198265 - AluY SINE Alu -5 306 2 1722 173 13 21 chrX 158775875 158776121 -18198019 - L1 LINE L1 -1826 4320 4077 3444 183 23 48 chrX 158776125 158777495 -18196645 + L1M3 LINE L1 4456 5793 -541 272 202 48 42 chrX 158777495 158777663 -18196477 + (TA)n Simple_repeat Simple_repeat 1 169 0 539 143 6 37 chrX 158777671 158777809 -18196331 + L1MA9 LINE L1 5664 5791 -383 1369 181 34 15 chrX 158777834 158778144 -18195996 + L1MA9 LINE L1 5760 6092 -76 940 141 82 0 chrX 158778337 158778507 -18195633 + LTR47A LTR ERVL 261 444 -8 1537 135 34 69 chrX 158778509 158778593 -18195547 + L1MA10 LINE L1 5998 6083 -251 2832 140 4 15 chrX 158778593 158779056 -18195084 + LTR22A LTR ERVK 1 458 0 1537 135 34 69 chrX 158779056 158779320 -18194820 + L1MA10 LINE L1 6083 6334 0 2082 126 0 17 chrX 158779561 158779863 -18194277 + AluSq SINE Alu 1 297 -16 2079 104 46 0 chrX 158780108 158780388 -18193752 - AluSg SINE Alu -15 295 3 21 0 0 0 chrX 158780624 158780645 -18193495 + AT_rich Low_complexity Low_complexity 1 21 0 956 102 0 8 chrX 158780753 158780921 -18193219 - AluSp/q SINE Alu 0 322 156 2321 92 0 3 chrX 158781124 158781430 -18192710 + AluSg SINE Alu 1 305 -5 1866 113 11 11 chrX 158781432 158781714 -18192426 + AluSc SINE Alu 1 282 -27 189 0 0 0 chrX 158783231 158783252 -18190888 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 207 69 0 0 chrX 158783258 158783287 -18190853 + (TG)n Simple_repeat Simple_repeat 2 30 0 1675 68 147 15 chrX 158783292 158783583 -18190557 - AluY SINE Alu 0 327 2 2142 105 17 14 chrX 158783892 158784188 -18189952 - AluSx SINE Alu -15 297 1 3778 84 19 9 chrX 158784660 158785540 -18188600 - L1PA11 LINE L1 -388 5780 4895 2556 82 41 0 chrX 158785540 158785896 -18188244 + L1PA11 LINE L1 5793 6171 -3 25347 101 12 45 chrX 158786405 158792817 -18181323 - L1PA7 LINE L1 -1 6153 12 463 315 49 11 chrX 158793879 158794063 -18180077 - MIR SINE MIR -10 252 62 22 0 0 0 chrX 158795169 158795191 -18178949 + AT_rich Low_complexity Low_complexity 1 22 0 2572 249 62 29 chrX 158795434 158796441 -18177699 + L1ME1 LINE L1 5122 6160 -6 231 170 0 0 chrX 158797130 158797177 -18176963 + (CA)n Simple_repeat Simple_repeat 2 48 0 754 208 27 0 chrX 158798503 158798686 -18175454 + L1MA9 LINE L1 5898 6085 -227 2047 157 19 22 chrX 158798686 158798832 -18175308 - MER39 LTR ERV1 0 707 562 4157 181 124 16 chrX 158798832 158799753 -18174387 + LTR28 LTR ERV1 1 1020 0 2047 157 19 22 chrX 158799753 158799975 -18174165 - MER39 LTR ERV1 -145 562 340 1159 187 139 4 chrX 158799976 158800227 -18173913 - MER39 LTR ERV1 -421 286 2 1347 90 85 0 chrX 158800228 158800439 -18173701 + L1MA9 LINE L1 6081 6309 -3 587 321 34 19 chrX 158800452 158800661 -18173479 + MIR SINE MIR 1 212 -50 512 262 134 0 chrX 158800996 158801168 -18172972 - MIR SINE MIR 0 262 68 3625 111 0 4 chrX 158801176 158801689 -18172451 - MER9 LTR ERVK 0 511 1 1000 171 0 33 chrX 158801736 158801917 -18172223 - AluSx SINE Alu -1 311 137 650 161 42 42 chrX 158801917 158802060 -18172080 - MER39 LTR ERV1 -159 548 406 321 195 53 0 chrX 158802185 158802260 -18171880 - MER39 LTR ERV1 -309 398 182 976 133 0 0 chrX 158802310 158802445 -18171695 - AluSx SINE Alu -178 135 1 185 318 121 35 chrX 158802457 158802630 -18171510 - MIR SINE MIR -12 250 63 31 58 0 0 chrX 158802698 158802750 -18171390 + AT_rich Low_complexity Low_complexity 1 52 0 830 133 53 0 chrX 158802933 158803083 -18171057 + L1MA9 LINE L1 6155 6312 0 396 138 0 0 chrX 158804752 158804817 -18169323 + (CA)n Simple_repeat Simple_repeat 2 66 0 426 300 75 36 chrX 158805131 158805807 -18168333 + L1MEc LINE L1 908 1654 -4656 828 268 63 24 chrX 158806847 158807227 -18166913 + Charlie4a DNA MER1_type 24 418 -90 1616 168 3 49 chrX 158807451 158807755 -18166385 + AluJo SINE Alu 2 291 -21 183 255 98 49 chrX 158808645 158808747 -18165393 + L2 LINE L2 2410 2516 -798 1262 260 26 36 chrX 158808777 158809165 -18164975 + LTR16A LTR ERVL 54 437 -13 1963 113 13 37 chrX 158809257 158809557 -18164583 - AluSx SINE Alu 0 312 20 475 209 0 0 chrX 158809910 158809996 -18164144 + LTR16C LTR ERVL 403 488 -3 900 203 32 69 chrX 158810026 158810243 -18163897 + MER58A DNA MER1_type 1 209 -15 2505 137 10 2 chrX 158810994 158811397 -18162743 - L1P4 LINE L1 -401 5765 5360 374 200 0 38 chrX 158811388 158811468 -18162672 - L1PB4 LINE L1 -39 6117 6041 * 3995 97 51 6 chrX 158811482 158812104 -18162036 + L1MA1 LINE L1 5646 6295 -7 437 117 0 0 chrX 158812118 158812178 -18161962 + U6 snRNA snRNA 48 107 0 304 304 0 0 chrX 158812199 158812314 -18161826 + L1MA9 LINE L1 6159 6273 -39 471 302 0 0 chrX 158812632 158812748 -18161392 + MIR SINE MIR 29 144 -118 6117 142 16 13 chrX 158812764 158813731 -18160409 + THE1C-int LTR MaLR 612 1580 0 2598 106 8 16 chrX 158813731 158814109 -18160031 + THE1C LTR MaLR 1 375 0 8861 187 19 2 chrX 158814115 158816444 -18157696 + L1P5 LINE L1 3426 5795 -356 284 76 86 9 chrX 158816444 158816549 -18157591 + (TA)n Simple_repeat Simple_repeat 2 114 0 4759 197 51 3 chrX 158818000 158819045 -18155095 - L1 LINE L1 -1279 5049 3955 2861 255 59 44 chrX 158819171 158820392 -18153748 - L1 LINE L1 -4101 1227 540 886 353 16 36 chrX 158821292 158821734 -18152406 - L1 LINE L1 -5521 728 296 872 138 22 22 chrX 158822792 158822973 -18151167 + L1MA8 LINE L1 6105 6285 -6 208 370 158 5 chrX 158823749 158823933 -18150207 - MIR SINE MIR 0 262 51 299 316 21 11 chrX 158825048 158825167 -18148973 + MIR SINE MIR 34 153 -64 418 243 82 67 chrX 158825226 158825311 -18148829 + L1MC5 LINE L1 7510 7592 -369 360 0 0 0 chrX 158825311 158825351 -18148789 + (CA)n Simple_repeat Simple_repeat 2 41 0 418 243 82 67 chrX 158825351 158825533 -18148607 + L1MC5 LINE L1 7592 7781 -180 1797 163 28 48 chrX 158825700 158826055 -18148085 + MLT1B LTR MaLR 1 348 -42 255 224 0 0 chrX 158826098 158826156 -18147984 - MER92A LTR ERV1 0 412 355 1305 266 32 24 chrX 158826411 158826820 -18147320 - MER92A LTR ERV1 0 412 1 207 351 0 0 chrX 158826894 158826968 -18147172 + MIR SINE MIR 177 250 -12 260 254 0 0 chrX 158827013 158827068 -18147072 - MER5A DNA MER1_type -7 182 128 478 154 73 18 chrX 158827082 158827192 -18146948 + MER4C LTR ERV1 1 116 -349 944 228 69 67 chrX 158827274 158827737 -18146403 + LTR34 LTR ERV1 136 694 -5 1317 178 89 43 chrX 158828958 158829115 -18145025 + LTR48 LTR ERV1 41 189 -598 2144 127 16 47 chrX 158829115 158829502 -18144638 + THE1C LTR MaLR 1 375 0 1317 178 89 43 chrX 158829502 158829874 -18144266 + LTR48 LTR ERV1 189 754 -33 228 135 0 0 chrX 158829902 158829939 -18144201 + (T)n Simple_repeat Simple_repeat 1 37 0 2236 182 66 22 chrX 158829965 158830453 -18143687 + LTR22 LTR ERVK 1 509 0 1492 211 4 0 chrX 158830456 158830716 -18143424 - AluJb SINE Alu -51 261 1 224 261 0 0 chrX 158831243 158831289 -18142851 + MIR SINE MIR 58 103 -105 2195 121 11 11 chrX 158831452 158831807 -18142333 - THE1A LTR MaLR 0 355 1 547 245 50 91 chrX 158832248 158832594 -18141546 - LTR35 LTR ERV1 0 675 351 2678 123 51 35 chrX 158832920 158833042 -18141098 - L1PA16 LINE L1 -2 6164 6045 2572 40 0 3 chrX 158833042 158833342 -18140798 + AluY SINE Alu 1 299 -12 2678 123 51 35 chrX 158833342 158833706 -18140434 - L1PA16 LINE L1 -121 6045 5670 550 68 14 0 chrX 158833706 158833779 -18140361 + L1PA16 LINE L1 5579 5652 -514 1670 172 31 3 chrX 158834995 158835314 -18138826 - L1MB1 LINE L1 0 6168 5841 1793 179 82 26 chrX 158835317 158835780 -18138360 - L1MB1 LINE L1 -1793 4353 3865 23 33 0 0 chrX 158836563 158836593 -18137547 + AT_rich Low_complexity Low_complexity 1 30 0 1804 109 0 4 chrX 158838161 158838426 -18135714 + L1PB1 LINE L1 5887 6150 -1 1141 241 15 37 chrX 158838989 158839128 -18135012 + MLT1E LTR MaLR 328 461 -132 2132 63 8 8 chrX 158839128 158839440 -18134700 + AluSg1 SINE Alu 1 278 -31 1141 241 15 37 chrX 158839440 158839569 -18134571 + MLT1E LTR MaLR 461 591 -2 199 328 16 0 chrX 158839721 158839782 -18134358 + L2 LINE L2 3200 3261 -11 2255 102 3 0 chrX 158839815 158840109 -18134031 - AluSc SINE Alu -14 295 1 1534 179 48 3 chrX 158840191 158840482 -18133658 + AluJb SINE Alu 1 304 -8 211 133 0 22 chrX 158840585 158840630 -18133510 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 936 193 3 7 chrX 158840889 158841106 -18133034 - L1MB5 LINE L1 -1 6179 5963 * 1450 209 23 43 chrX 158841092 158841441 -18132699 + L1MB5 LINE L1 5825 6166 -8 671 173 126 37 chrX 158841465 158841656 -18132484 + L1MC2 LINE L1 6137 6344 0 1773 67 25 0 chrX 158841696 158841934 -18132206 - L1PA7 LINE L1 0 6154 5911 2070 184 38 11 chrX 158842151 158842656 -18131484 + LTR69 LTR ERVL 9 588 0 306 149 50 14 chrX 158843772 158843913 -18130227 + (TA)n Simple_repeat Simple_repeat 1 146 0 225 157 78 0 chrX 158843922 158843973 -18130167 + (TATAG)n Simple_repeat Simple_repeat 3 57 0 212 132 26 40 chrX 158843975 158844051 -18130089 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 531 258 220 32 chrX 158844138 158844549 -18129591 + MLT1G1 LTR MaLR 87 595 0 21 36 0 0 chrX 158845204 158845232 -18128908 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chrX 158845619 158845643 -18128497 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 923 198 6 6 chrX 158845989 158846171 -18127969 + MLT1D LTR MaLR 324 505 0 4598 159 27 7 chrX 158846341 158847165 -18126975 + L1MC1 LINE L1 5289 6128 -205 7717 186 77 35 chrX 158847165 158848818 -18125322 + L1M1 LINE L1 16 1738 -5827 904 177 0 0 chrX 158848819 158848977 -18125163 - L1P LINE L1 -1208 4938 4781 8725 152 31 50 chrX 158848983 158850677 -18123463 - L1P LINE L1 -1901 4245 2583 686 312 106 30 chrX 158851266 158851635 -18122505 - MLT1I LTR MaLR -1 408 12 236 256 64 26 chrX 158852035 158852113 -18122027 + MLT1L LTR MaLR 1 81 -534 22 35 0 0 chrX 158852484 158852513 -18121627 + AT_rich Low_complexity Low_complexity 1 29 0 1300 255 46 19 chrX 158853307 158853680 -18120460 - LTR10C LTR ERV1 -21 570 188 802 93 0 44 chrX 158853700 158853883 -18120257 + (TA)n Simple_repeat Simple_repeat 2 176 0 507 28 45 73 chrX 158853908 158854085 -18120055 + (TA)n Simple_repeat Simple_repeat 1 172 0 198 83 55 55 chrX 158854102 158854211 -18119929 + (TA)n Simple_repeat Simple_repeat 1 109 0 216 355 0 0 chrX 158854887 158854949 -18119191 - MER5A DNA MER1_type -51 138 77 3930 52 17 0 chrX 158854952 158855434 -18118706 + LTR2B LTR ERV1 1 490 0 3659 149 17 8 chrX 158855685 158856281 -18117859 + L1PA12 LINE L1 1 601 -6980 4857 117 25 21 chrX 158856282 158857058 -18117082 + MER4E LTR ERV1 1 779 0 1261 148 30 48 chrX 158857059 158857120 -18117020 + L1MA10 LINE L1 6069 6130 -204 2043 107 3 3 chrX 158857120 158857409 -18116731 + AluSg SINE Alu 1 289 -21 1261 148 30 48 chrX 158857409 158857617 -18116523 + L1MA10 LINE L1 6130 6333 -1 454 365 11 11 chrX 158858355 158858544 -18115596 - MER5A DNA MER1_type 0 189 1 398 259 231 0 chrX 158858554 158858701 -18115439 - MER5A DNA MER1_type -5 184 4 3422 174 42 30 chrX 158860255 158860968 -18113172 - LTR8A LTR ERV1 -5 722 1 35 24 0 0 chrX 158860984 158861026 -18113114 + AT_rich Low_complexity Low_complexity 1 42 0 251 133 17 17 chrX 158861045 158861105 -18113035 - LTR66 LTR ERVL -171 439 380 204 97 0 0 chrX 158861112 158861143 -18112997 + (TG)n Simple_repeat Simple_repeat 1 31 0 4214 144 39 3 chrX 158861789 158862464 -18111676 - MER50 LTR ERV1 -35 699 1 529 351 128 26 chrX 158864190 158864649 -18109491 - L2 LINE L2 -352 2962 2457 300 308 53 15 chrX 158865711 158865844 -18108296 - MIR SINE MIR -6 256 119 421 323 27 42 chrX 158866207 158866541 -18107599 + HAL1 LINE L1 745 1073 -1434 204 200 0 40 chrX 158867128 158867178 -18106962 + (TATG)n Simple_repeat Simple_repeat 1 48 0 294 328 31 86 chrX 158867420 158867676 -18106464 + MIR SINE MIR 19 260 -2 676 121 40 0 chrX 158867897 158868021 -18106119 + L1PB3 LINE L1 6022 6150 -4 288 318 46 26 chrX 158868022 158868173 -18105967 + L3b LINE CR1 1308 1461 -122 342 355 95 28 chrX 158869347 158869736 -18104404 - L1ME3A LINE L1 -223 5947 5533 356 269 81 51 chrX 158869771 158869968 -18104172 - L1ME3A LINE L1 -772 5374 5172 2015 129 10 3 chrX 158870088 158870397 -18103743 + AluSq SINE Alu 3 313 0 1619 209 40 3 chrX 158870412 158871012 -18103128 - L1MC/D LINE L1 -743 5403 4968 896 118 0 0 chrX 158871013 158871132 -18103008 - AluSp SINE Alu -58 255 137 368 252 10 0 chrX 158871138 158871241 -18102899 - L1MC/D LINE L1 -1637 4509 4406 2246 136 8 30 chrX 158871276 158871606 -18102534 - MER46B DNA MER2_type -2495 236 38 699 220 0 0 chrX 158871606 158871738 -18102402 - FLAM_A SINE Alu 0 133 2 2246 136 8 30 chrX 158871738 158871776 -18102364 - MER46B DNA MER2_type -2693 38 1 752 272 43 11 chrX 158871787 158872066 -18102074 - L1MC/D LINE L1 -1777 4369 4082 353 202 121 10 chrX 158872069 158872168 -18101972 - L1 LINE L1 -2024 4122 4013 1457 97 5 5 chrX 158872169 158872365 -18101775 - AluSc SINE Alu -5 304 109 330 80 0 0 chrX 158875588 158875638 -18098502 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 1133 147 15 15 chrX 158875722 158875919 -18098221 + AluJb SINE Alu 112 308 -4 22 35 0 0 chrX 158876473 158876502 -18097638 + AT_rich Low_complexity Low_complexity 1 29 0 598 228 8 16 chrX 158876545 158876672 -18097468 + FLAM_A SINE Alu 2 127 -6 2269 106 0 0 chrX 158876677 158876980 -18097160 + AluSc SINE Alu 1 303 -6 22 35 0 0 chrX 158877938 158877967 -18096173 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 158878425 158878446 -18095694 + AT_rich Low_complexity Low_complexity 1 21 0 261 162 176 0 chrX 158878446 158878520 -18095620 - L1MA7 LINE L1 -4 6287 6201 4912 152 46 20 chrX 158878583 158879645 -18094495 - L1MA7 LINE L1 -96 6195 5117 * 5123 206 27 4 chrX 158879628 158880792 -18093348 - L1MA7 LINE L1 -1633 4513 3324 24 32 0 0 chrX 158880794 158880825 -18093315 + AT_rich Low_complexity Low_complexity 1 31 0 421 277 31 5 chrX 158880900 158881095 -18093045 + L1M4 LINE L1 4339 4538 -1608 305 56 0 0 chrX 158881351 158881387 -18092753 - U2 snRNA snRNA -152 36 1 267 377 115 0 chrX 158881405 158881527 -18092613 - L2 LINE L2 -11 3261 3126 672 263 0 0 chrX 158881618 158881774 -18092366 - MLT1E1 LTR MaLR 0 654 499 51 42 0 0 chrX 158881829 158881901 -18092239 + AT_rich Low_complexity Low_complexity 1 72 0 672 166 14 7 chrX 158883566 158883705 -18090435 - L1MB7 LINE L1 -303 5881 5742 2387 196 29 0 chrX 158884089 158884644 -18089496 - L1MB7 LINE L1 -424 5750 5181 2295 202 77 5 chrX 158884647 158884686 -18089454 - MLT2B2 LTR ERVL -1 514 479 336 102 0 0 chrX 158884686 158884735 -18089405 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 2295 202 77 5 chrX 158884735 158885050 -18089090 - MLT2B2 LTR ERVL -36 479 119 1927 87 0 4 chrX 158885050 158885303 -18088837 - AluSq SINE Alu -53 260 9 2295 202 77 5 chrX 158885303 158885388 -18088752 - MLT2B2 LTR ERVL -396 119 42 341 67 0 0 chrX 158885392 158885437 -18088703 - MADE1 DNA Mariner -35 45 1 3034 285 42 68 chrX 158885450 158887063 -18087077 - L1M4 LINE L1 -4971 1571 2 193 330 33 22 chrX 158887890 158887981 -18086159 - L2 LINE L2 -43 3270 3179 207 375 39 16 chrX 158888567 158888695 -18085445 - L2 LINE L2 -570 2744 2614 18310 169 15 15 chrX 158889287 158890089 -18084051 - L1PA13 LINE L1 -9 7592 6792 1988 198 84 15 chrX 158890089 158890565 -18083575 + LTR22 LTR ERVK 1 509 0 18310 169 15 15 chrX 158890565 158893076 -18081064 - L1PA13 LINE L1 -809 6792 4272 2293 108 0 0 chrX 158893076 158893371 -18080769 - AluSc SINE Alu -14 295 1 18310 169 15 15 chrX 158893371 158894489 -18079651 - L1PA13 LINE L1 -3329 4272 3156 5715 254 35 39 chrX 158894460 158896735 -18077405 - L1PA13 LINE L1 -4762 2822 10 * 1200 96 23 0 chrX 158896740 158896917 -18077223 + L1MA5 LINE L1 6115 6295 -5 264 123 78 19 chrX 158897536 158897690 -18076450 + (TA)n Simple_repeat Simple_repeat 1 163 0 4697 236 32 43 chrX 158898567 158899088 -18075052 + L1MC3 LINE L1 6341 6866 -919 1622 143 43 16 chrX 158899088 158899346 -18074794 + AluJo SINE Alu 1 265 -47 4697 236 32 43 chrX 158899346 158900263 -18073877 + L1MC3 LINE L1 6866 7763 -22 1594 168 96 6 chrX 158900635 158900968 -18073172 - MLT1A1 LTR MaLR -2 363 1 297 304 205 0 chrX 158901029 158901141 -18072999 - MER5A DNA MER1_type -3 186 52 836 202 17 17 chrX 158901156 158901334 -18072806 + MER5A DNA MER1_type 12 189 0 380 288 100 19 chrX 158901345 158901505 -18072635 + MER5B DNA MER1_type 5 177 -1 204 342 13 0 chrX 158902545 158902624 -18071516 - MIR SINE MIR -13 249 170 353 285 47 52 chrX 158902677 158902870 -18071270 + L2 LINE L2 3102 3293 -20 465 223 7 14 chrX 158902874 158903022 -18071118 + GA-rich Low_complexity Low_complexity 2 148 0 753 142 11 68 chrX 158903529 158903708 -18070432 - LTR49 LTR ERV1 -462 133 1 23 0 0 0 chrX 158907038 158907061 -18067079 + AT_rich Low_complexity Low_complexity 1 23 0 688 121 0 0 chrX 158907700 158907791 -18066349 - MER8 DNA MER2_type 0 239 149 2337 88 0 0 chrX 158907792 158908107 -18066033 + AluSq SINE Alu 1 315 0 5306 90 6 0 chrX 158908107 158908831 -18065309 + L1PA11 LINE L1 5431 6158 -16 4353 164 36 27 chrX 158908857 158909494 -18064646 - L1MA5 LINE L1 -175 6125 5495 180 0 0 0 chrX 158909494 158909514 -18064626 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 4353 164 36 27 chrX 158909514 158910203 -18063937 - L1MA5 LINE L1 -805 5495 4782 26 0 0 0 chrX 158910373 158910399 -18063741 + AT_rich Low_complexity Low_complexity 1 26 0 21 57 0 0 chrX 158910642 158910677 -18063463 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chrX 158911037 158911065 -18063075 + AT_rich Low_complexity Low_complexity 1 28 0 230 139 0 0 chrX 158911232 158911268 -18062872 - MLT2C1 LTR ERVL -7 390 355 * 704 250 5 72 chrX 158911261 158911469 -18062671 - MLT2B1 LTR ERVL -93 427 234 6896 194 43 3 chrX 158911469 158913263 -18060877 - ERVL LTR ERVL -2917 2847 933 32 67 0 0 chrX 158913424 158913484 -18060656 + AT_rich Low_complexity Low_complexity 1 60 0 585 311 19 35 chrX 158914182 158914540 -18059600 + L1MB1 LINE L1 1356 1938 -5548 485 141 0 0 chrX 158914836 158914907 -18059233 - LTR8 LTR ERV1 -123 568 498 723 185 0 23 chrX 158914921 158915051 -18059089 - LTR8 LTR ERV1 -564 127 1 390 290 124 16 chrX 158915070 158915256 -18058884 + L1MB1 LINE L1 2774 2979 -4588 2831 126 93 27 chrX 158915271 158915850 -18058290 - MER4B LTR ERV1 0 779 1 7344 239 47 15 chrX 158915853 158916205 -18057935 + L1MB1 LINE L1 3069 3408 -4157 183 114 0 0 chrX 158916205 158916240 -18057900 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 7344 239 47 15 chrX 158916240 158918460 -18055680 + L1MB1 LINE L1 3408 5737 -1828 5409 178 7 7 chrX 158918465 158920236 -18053904 - L1MA4 LINE L1 -23 6459 4689 * 6286 159 15 71 chrX 158920231 158920949 -18053191 - L1MA4 LINE L1 -4119 1209 591 2285 155 57 5 chrX 158920949 158921356 -18052784 + MSTA LTR MaLR 1 428 0 6286 159 15 71 chrX 158921356 158921902 -18052238 - L1MA4 LINE L1 -4737 591 16 3934 234 28 5 chrX 158921904 158922893 -18051247 + L1MB1 LINE L1 5740 6751 -814 4009 169 43 20 chrX 158924908 158925427 -18048713 + L1MB1 LINE L1 6732 7238 -349 2023 117 0 7 chrX 158925427 158925709 -18048431 + AluSx SINE Alu 27 306 -6 186 43 0 0 chrX 158925709 158925732 -18048408 + (GA)n Simple_repeat Simple_repeat 2 24 0 4009 169 43 20 chrX 158925732 158926046 -18048094 + L1MB1 LINE L1 7237 7585 -2 634 340 110 0 chrX 158926063 158926398 -18047742 + LTR16A LTR ERVL 1 372 -78 255 264 11 11 chrX 158929092 158929179 -18044961 + (TA)n Simple_repeat Simple_repeat 2 88 0 2309 93 10 0 chrX 158929240 158929542 -18044598 - AluSq SINE Alu -6 307 3 2089 134 32 29 chrX 158929570 158929944 -18044196 - THE1C LTR MaLR 0 375 1 23 0 0 0 chrX 158932696 158932719 -18041421 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chrX 158932995 158933029 -18041111 + AT_rich Low_complexity Low_complexity 1 34 0 3400 120 51 51 chrX 158933487 158934097 -18040043 - MER4B LTR ERV1 0 610 1 5814 144 23 29 chrX 158934097 158935125 -18039015 - MER4B-int LTR ERV1 0 6758 5737 2167 123 28 19 chrX 158935139 158935463 -18038677 + MER1B DNA MER1_type 13 339 0 2851 101 35 53 chrX 158935484 158935970 -18038170 - MER4B-int LTR ERV1 -1269 5489 5013 968 85 24 55 chrX 158935972 158936137 -18038003 - MER4B-int LTR ERV1 -2278 4480 4321 8748 137 23 34 chrX 158936141 158937252 -18036888 - MER4B-int LTR ERV1 -2572 4186 3064 2256 112 0 0 chrX 158937252 158937548 -18036592 - AluSq SINE Alu -17 296 1 8748 137 23 34 chrX 158937548 158939162 -18034978 - MER4B-int LTR ERV1 -3694 3064 786 783 191 62 99 chrX 158939357 158939647 -18034493 + MER51C LTR ERV1 370 640 0 5132 116 28 23 chrX 158939647 158940365 -18033775 - MER4B-int LTR ERV1 -5691 1067 343 2341 67 40 0 chrX 158940365 158940664 -18033476 + AluY SINE Alu 1 311 0 5132 116 28 23 chrX 158940664 158940811 -18033329 - MER4B-int LTR ERV1 -6415 343 198 1055 247 37 27 chrX 158940832 158941168 -18032972 - MER4B-int LTR ERV1 -4172 2159 1861 30 0 0 0 chrX 158941170 158941200 -18032940 + AT_rich Low_complexity Low_complexity 1 30 0 294 84 0 56 chrX 158941232 158941303 -18032837 + (TTTTTG)n Simple_repeat Simple_repeat 1 67 0 2054 152 63 17 chrX 158941370 158941943 -18032197 - MER4B-int LTR ERV1 -5912 686 1 3778 113 51 10 chrX 158941946 158942532 -18031608 - MER4B LTR ERV1 0 610 1 299 290 123 42 chrX 158942568 158942714 -18031426 + L1MC4a LINE L1 7154 7287 -755 2256 114 0 0 chrX 158942714 158943003 -18031137 - AluSg SINE Alu -21 289 1 299 290 123 42 chrX 158943003 158943440 -18030700 + L1MC4a LINE L1 7287 7687 -355 252 59 0 0 chrX 158943440 158943474 -18030666 + (TG)n Simple_repeat Simple_repeat 1 34 0 401 114 143 0 chrX 158943480 158943550 -18030590 + MADE1 DNA Mariner 1 80 0 299 290 123 42 chrX 158943550 158943699 -18030441 + L1MC4a LINE L1 7691 8035 -7 224 339 58 63 chrX 158944210 158944384 -18029756 + MIR SINE MIR 63 235 -27 2282 67 16 3 chrX 158944583 158944896 -18029244 - L1MA1 LINE L1 -4 6298 5982 1770 114 0 4 chrX 158944912 158945176 -18028964 - AluSq SINE Alu 0 313 51 92 58 0 6 chrX 158945278 158945410 -18028730 + AT_rich Low_complexity Low_complexity 1 133 -39 1690 175 3 30 chrX 158945410 158945707 -18028433 - AluJo SINE Alu -22 290 2 92 58 0 6 chrX 158945707 158945747 -18028393 + AT_rich Low_complexity Low_complexity 133 172 0 399 293 65 45 chrX 158946170 158946416 -18027724 - LTR16A1 LTR ERVL -61 396 146 1068 261 30 43 chrX 158946825 158946959 -18027181 - MLT1E3 LTR MaLR 0 624 490 1423 224 61 45 chrX 158946959 158947191 -18026949 - LTR2 LTR ERV1 0 449 205 186 43 0 0 chrX 158947191 158947214 -18026926 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1423 224 61 45 chrX 158947214 158947423 -18026717 - LTR2 LTR ERV1 -244 205 1 1068 261 30 43 chrX 158947423 158947659 -18026481 - MLT1E3 LTR MaLR -134 490 259 484 262 134 6 chrX 158947801 158947973 -18026167 - MLT1E3 LTR MaLR -430 194 1 1543 155 111 28 chrX 158948076 158948464 -18025676 - LTR49 LTR ERV1 -169 426 7 2460 214 48 52 chrX 158948470 158949198 -18024942 + MER50 LTR ERV1 10 734 0 3628 78 14 151 chrX 158949374 158950069 -18024071 + MER4A LTR ERV1 1 600 0 4142 148 35 3 chrX 158950655 158951344 -18022796 - MER50 LTR ERV1 -23 711 1 272 323 120 42 chrX 158951905 158952097 -18022043 + MIR SINE MIR 45 251 -11 281 237 43 32 chrX 158952335 158952428 -18021712 + L3b LINE CR1 1326 1419 -164 320 346 62 11 chrX 158952926 158953105 -18021035 - L1ME LINE L1 -449 5790 5603 345 269 77 39 chrX 158953137 158953293 -18020847 - L1ME LINE L1 -772 5443 5282 604 229 42 132 chrX 158953417 158953841 -18020299 - L1MD2 LINE L1 -79 6280 5895 542 323 45 15 chrX 158953960 158954226 -18019914 - L1ME LINE L1 -3976 2420 2147 2307 79 0 47 chrX 158954693 158955010 -18019130 - AluSp SINE Alu -11 302 1 898 173 35 6 chrX 158955617 158955790 -18018350 - MLT1C LTR MaLR 0 467 290 385 281 63 89 chrX 158955794 158956512 -18017628 - L1M4 LINE L1 -1370 4776 4080 2049 147 3 3 chrX 158956512 158956825 -18017315 - AluSq SINE Alu 0 313 1 385 281 63 89 chrX 158956825 158956915 -18017225 - L1M4 LINE L1 -2066 4080 3989 21 0 0 0 chrX 158956969 158956990 -18017150 + AT_rich Low_complexity Low_complexity 1 21 0 635 270 90 75 chrX 158957072 158957636 -18016504 - L1M4 LINE L1 -1155 4991 4437 2231 108 3 13 chrX 158957636 158957943 -18016197 - AluSp SINE Alu -9 304 1 635 270 90 75 chrX 158957943 158958487 -18015653 - L1M4 LINE L1 -1709 4437 3866 331 313 39 22 chrX 158958506 158958685 -18015455 + LTR33A LTR ERVL 3 184 -339 30 27 0 0 chrX 158958694 158958731 -18015409 + AT_rich Low_complexity Low_complexity 1 37 0 320 290 28 83 chrX 158958816 158959106 -18015034 + L1MC5 LINE L1 7076 7349 -612 2193 89 0 0 chrX 158959415 158959695 -18014445 + AluSg SINE Alu 14 293 -17 2373 63 0 38 chrX 158960527 158960842 -18013298 - AluY SINE Alu -8 303 1 182 362 29 58 chrX 158966676 158966814 -18007326 - MIR3 SINE MIR -74 134 1 23 42 0 21 chrX 158967688 158967709 -18006431 + AT_rich Low_complexity Low_complexity 1 21 -26 2202 87 31 0 chrX 158967709 158967996 -18006144 + AluSg1 SINE Alu 1 296 -13 23 42 0 21 chrX 158967996 158968022 -18006118 + AT_rich Low_complexity Low_complexity 21 47 0 870 185 116 139 chrX 158968129 158968733 -18005407 + LTR49 LTR ERV1 5 594 -1 681 125 0 45 chrX 158968889 158968948 -18005192 + AluSg/x SINE Alu 187 240 -72 2850 117 19 2 chrX 158968948 158969375 -18004765 + MER57B LTR ERV1 1 434 0 681 125 0 45 chrX 158969375 158969427 -18004713 + AluSg/x SINE Alu 240 293 -19 28 29 0 0 chrX 158969964 158969999 -18004141 + AT_rich Low_complexity Low_complexity 1 35 0 2435 111 31 0 chrX 158970231 158970584 -18003556 + THE1B LTR MaLR 1 364 0 1036 256 33 56 chrX 158971265 158971795 -18002345 - PABL_B LTR ERV1 -4 663 3 21 36 0 0 chrX 158972264 158972292 -18001848 + AT_rich Low_complexity Low_complexity 1 28 0 1022 186 0 33 chrX 158973930 158974113 -18000027 - AluJo SINE Alu -17 295 119 830 168 8 0 chrX 158974142 158974273 -17999867 - AluJo SINE Alu -170 132 1 2015 161 98 21 chrX 158974474 158974902 -17999238 - LOR1b LTR ERV1 0 461 1 1414 169 26 4 chrX 158974903 158975170 -17998970 - LOR1b-int LTR ERV1 -2 8118 7846 680 87 78 0 chrX 158975170 158975273 -17998867 - LOR1b-int LTR ERV1 -427 7693 7583 15613 152 21 60 chrX 158975277 158977163 -17996977 - LOR1b-int LTR ERV1 -1305 6815 4857 1835 188 26 0 chrX 158977163 158977467 -17996673 - AluJb SINE Alu 0 312 1 15613 152 21 60 chrX 158977467 158979239 -17994901 - LOR1b-int LTR ERV1 -3263 4857 2400 4410 124 24 66 chrX 158979800 158980765 -17993375 - LOR1b-int LTR ERV1 -6217 1903 980 1657 265 110 22 chrX 158980771 158981353 -17992787 + MER50 LTR ERV1 79 711 -23 404 184 0 0 chrX 158981371 158981474 -17992666 - LOR1b-int LTR ERV1 -7436 684 423 2328 183 16 13 chrX 158981519 158981582 -17992558 - LOR1b-int LTR ERV1 -7670 450 389 2329 97 0 10 chrX 158981582 158981891 -17992249 + AluSg SINE Alu 5 310 0 2328 183 16 13 chrX 158981891 158982276 -17991864 - LOR1b-int LTR ERV1 -7731 389 1 1880 164 90 14 chrX 158982283 158982532 -17991608 - LOR1b LTR ERV1 -7 454 159 1417 112 0 0 chrX 158982532 158982738 -17991402 - L1PA14 LINE L1 -17 6144 5939 1880 164 90 14 chrX 158982738 158982910 -17991230 - LOR1b LTR ERV1 -302 159 1 23 0 0 0 chrX 158983045 158983068 -17991072 + AT_rich Low_complexity Low_complexity 1 23 0 562 172 0 17 chrX 158983878 158983994 -17990146 + LTR49 LTR ERV1 318 431 -164 2316 89 0 54 chrX 158984047 158984174 -17989966 + MER4A LTR ERV1 5 137 -527 3182 138 11 72 chrX 158984174 158984766 -17989374 + MER4B LTR ERV1 1 551 -59 2178 78 4 0 chrX 158984766 158985034 -17989106 - AluSp SINE Alu -11 302 34 3182 138 11 72 chrX 158985034 158985091 -17989049 + MER4B LTR ERV1 551 610 0 2316 89 0 54 chrX 158985091 158985332 -17988808 + MER4A LTR ERV1 137 353 -311 1943 128 12 77 chrX 158985301 158985658 -17988482 + MER4A LTR ERV1 170 607 -57 * 5853 113 12 8 chrX 158985658 158987393 -17986747 - L1PA14 LINE L1 -9 6152 4409 1943 128 12 77 chrX 158987393 158987448 -17986692 + MER4A LTR ERV1 607 664 0 559 143 9 54 chrX 158987448 158987560 -17986580 + LTR49 LTR ERV1 489 595 0 1092 271 110 47 chrX 158987843 158988004 -17986136 + HAL1b LINE L1 376 525 -823 1445 208 127 92 chrX 158988004 158988707 -17985433 + LTR8A LTR ERV1 1 727 0 1092 271 110 47 chrX 158988707 158989454 -17984686 + HAL1b LINE L1 525 1341 -7 180 0 0 0 chrX 158991102 158991122 -17983018 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 6465 109 7 6 chrX 158992164 158993135 -17981005 - L1PB1 LINE L1 0 6151 5175 216 0 0 0 chrX 158993135 158993159 -17980981 + (TTA)n Simple_repeat Simple_repeat 2 25 0 6465 109 7 6 chrX 158993159 158993262 -17980878 - L1PB1 LINE L1 -976 5175 5074 201 290 101 0 chrX 158993558 158993627 -17980513 + L2 LINE L2 2425 2500 -814 1730 121 56 8 chrX 158993671 158994174 -17979966 - LTR36 LTR ERV1 0 611 4 700 65 0 11 chrX 158994212 158994305 -17979835 + L1PB1 LINE L1 5861 5952 -199 1372 114 24 24 chrX 158994305 158994539 -17979601 + AluSg/x SINE Alu 71 304 0 1212 135 0 5 chrX 158994539 158994732 -17979408 + L1PB1 LINE L1 5960 6151 0 497 242 32 23 chrX 158994740 158994900 -17979240 + L1MB7 LINE L1 6010 6179 -4 915 186 26 0 chrX 158995145 158995338 -17978802 - L1MA5 LINE L1 -2 6298 6101 235 384 0 0 chrX 158996205 158996291 -17977849 - MER5A DNA MER1_type -1 188 103 2212 100 0 0 chrX 158996291 158996591 -17977549 + AluSx SINE Alu 1 300 -12 203 310 23 35 chrX 158996605 158996692 -17977448 - MER5B DNA MER1_type -75 103 18 195 69 0 0 chrX 158997309 158997338 -17976802 + (GA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chrX 158997562 158997591 -17976549 + AT_rich Low_complexity Low_complexity 1 29 0 2941 200 65 51 chrX 158997950 158998250 -17975890 - L1MB5 LINE L1 -31 6143 5849 2195 85 3 3 chrX 158998250 158998579 -17975561 - AluSp SINE Alu 0 329 1 2941 200 65 51 chrX 158998579 158999577 -17974563 - L1MB5 LINE L1 -325 5849 4815 2775 174 10 35 chrX 158999584 159000230 -17973910 - LTR8A-int LTR ERV1 -2043 2837 2302 500 202 58 4 chrX 159000303 159000425 -17973715 - LTR8A-int LTR ERV1 -3729 2217 2112 22 0 0 0 chrX 159000517 159000539 -17973601 + AT_rich Low_complexity Low_complexity 1 22 0 747 212 65 37 chrX 159000539 159000866 -17973274 - LTR8A-int LTR ERV1 -5470 1128 803 415 349 32 16 chrX 159001142 159001331 -17972809 - LTR8A-int LTR ERV1 -6071 192 1 879 257 151 18 chrX 159001331 159001716 -17972424 - LTR8A LTR ERV1 0 727 292 412 259 67 15 chrX 159001899 159001954 -17972186 - LTR8 LTR ERV1 -547 144 93 243 0 0 0 chrX 159001954 159001981 -17972159 + (TTA)n Simple_repeat Simple_repeat 2 28 0 412 259 67 15 chrX 159001981 159002060 -17972080 - LTR8 LTR ERV1 -598 93 3 226 189 0 0 chrX 159002135 159002172 -17971968 + LTR48B LTR ERV1 5 41 -603 2085 111 30 0 chrX 159002172 159002469 -17971671 + AluSx SINE Alu 1 306 -6 2985 183 45 7 chrX 159002508 159003082 -17971058 + LTR29 LTR ERV1 27 622 0 22 35 0 0 chrX 159003439 159003468 -17970672 + AT_rich Low_complexity Low_complexity 1 29 0 469 90 146 0 chrX 159004304 159004393 -17969747 + LTR60 LTR ERV1 1 102 -484 370 159 142 108 chrX 159004394 159004570 -17969570 + LTR60 LTR ERV1 404 585 -1 31 0 0 0 chrX 159004876 159004907 -17969233 + AT_rich Low_complexity Low_complexity 1 31 0 2864 171 0 4 chrX 159004957 159005460 -17968680 - L1PA16 LINE L1 -2 6164 5664 828 181 39 11 chrX 159005460 159005628 -17968512 + L1MC1 LINE L1 6147 6333 0 242 350 15 36 chrX 159005874 159006011 -17968129 - MIR SINE MIR -113 149 16 1447 105 0 0 chrX 159006394 159006585 -17967555 + AluSc SINE Alu 36 226 -83 180 111 0 0 chrX 159007074 159007101 -17967039 + (T)n Simple_repeat Simple_repeat 1 27 0 1183 158 0 0 chrX 159007113 159007296 -17966844 + AluJb SINE Alu 120 302 -10 533 85 61 0 chrX 159007573 159007655 -17966485 - L1PA15 LINE L1 -7 6158 6072 275 268 0 0 chrX 159007657 159007739 -17966401 - L1P LINE L1 -2957 3189 3108 37 81 0 0 chrX 159007748 159007834 -17966306 + AT_rich Low_complexity Low_complexity 1 86 0 6172 260 48 26 chrX 159008906 159011166 -17962974 + L1MB7 LINE L1 2452 4762 -1384 2286 66 0 0 chrX 159011323 159011597 -17962543 + AluY SINE Alu 6 279 -32 207 0 0 0 chrX 159011599 159011622 -17962518 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2574 219 85 32 chrX 159011622 159012274 -17961866 + L1MB7 LINE L1 5324 6022 -162 1947 130 0 11 chrX 159012274 159012585 -17961555 + AluSx SINE Alu 1 308 0 2574 219 85 32 chrX 159012585 159012674 -17961466 + L1MB7 LINE L1 6022 6105 -79 25 83 0 0 chrX 159012752 159012812 -17961328 + AT_rich Low_complexity Low_complexity 1 60 0 24 0 0 0 chrX 159013222 159013246 -17960894 + AT_rich Low_complexity Low_complexity 1 24 0 917 240 84 20 chrX 159013403 159013699 -17960441 + LTR16A1 LTR ERVL 143 457 0 307 340 29 10 chrX 159013894 159013997 -17960143 - L2 LINE L2 0 3272 3168 1318 32 0 0 chrX 159014555 159014713 -17959427 + L1PA5 LINE L1 5997 6154 0 475 220 9 28 chrX 159015183 159015292 -17958848 - L2 LINE L2 0 3313 3207 21 0 0 0 chrX 159015566 159015587 -17958553 + AT_rich Low_complexity Low_complexity 1 21 0 309 188 0 0 chrX 159015592 159015672 -17958468 + (TA)n Simple_repeat Simple_repeat 1 80 0 264 111 0 0 chrX 159016342 159016387 -17957753 + (ATG)n Simple_repeat Simple_repeat 2 46 0 285 109 0 0 chrX 159016664 159016710 -17957430 + (TTA)n Simple_repeat Simple_repeat 3 48 0 368 326 75 42 chrX 159017207 159017514 -17956626 + L2 LINE L2 2373 2689 -625 2182 121 0 0 chrX 159017589 159017895 -17956245 - AluSx SINE Alu -6 306 1 26 50 0 0 chrX 159018238 159018278 -17955862 + AT_rich Low_complexity Low_complexity 1 40 0 336 137 93 201 chrX 159018889 159019093 -17955047 - MLT1H LTR MaLR -9 540 359 4981 260 44 40 chrX 159019262 159021778 -17952362 + L1M4 LINE L1 38 2697 -4128 551 81 0 0 chrX 159021780 159021854 -17952286 + L1PA10 LINE L1 6091 6164 -4 1678 133 30 7 chrX 159022049 159022350 -17951790 - L1MA8 LINE L1 -186 6105 5798 453 36 0 0 chrX 159022350 159022405 -17951735 + (CA)n Simple_repeat Simple_repeat 1 55 0 794 137 16 0 chrX 159022412 159022536 -17951604 + L1MA10 LINE L1 5643 5768 -532 550 254 81 22 chrX 159022728 159022913 -17951227 + MIR SINE MIR 21 216 -46 764 253 76 67 chrX 159022995 159023323 -17950817 - L2 LINE L2 0 3313 2983 485 201 61 26 chrX 159023588 159023760 -17950380 + L1MA10 LINE L1 5987 6326 -8 22 56 0 0 chrX 159023979 159024015 -17950125 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chrX 159024089 159024126 -17950014 + AT_rich Low_complexity Low_complexity 1 37 0 303 172 61 10 chrX 159024807 159024880 -17949260 - MIR SINE MIR -74 188 114 2331 74 3 0 chrX 159024995 159025293 -17948847 + AluSp SINE Alu 1 299 -14 1966 250 121 11 chrX 159025489 159025852 -17948288 + LTR41 LTR ERVL 3 325 -448 2333 72 0 7 chrX 159025852 159026156 -17947984 + AluSg SINE Alu 2 303 -7 1966 250 121 11 chrX 159026156 159026404 -17947736 + LTR41 LTR ERVL 325 681 -92 22 56 0 0 chrX 159026422 159026458 -17947682 + AT_rich Low_complexity Low_complexity 1 36 0 245 183 49 73 chrX 159026462 159026544 -17947596 + LTR41 LTR ERVL 679 758 -15 669 339 52 7 chrX 159026850 159027139 -17947001 + ERVL LTR ERVL 353 654 -5110 254 312 99 20 chrX 159027378 159027580 -17946560 - L2 LINE L2 -1232 2082 1865 21 36 0 0 chrX 159028031 159028059 -17946081 + AT_rich Low_complexity Low_complexity 1 28 0 291 294 70 0 chrX 159028640 159028783 -17945357 + L1MC/D LINE L1 5674 5826 -1982 1246 286 51 15 chrX 159029139 159029590 -17944550 - MLT1F LTR MaLR -43 524 8 34 55 0 0 chrX 159029592 159029647 -17944493 + AT_rich Low_complexity Low_complexity 1 55 0 24 67 0 0 chrX 159030086 159030131 -17944009 + AT_rich Low_complexity Low_complexity 1 45 0 2133 76 4 14 chrX 159030265 159030541 -17943599 + AluSg SINE Alu 28 300 -10 246 406 32 19 chrX 159030579 159030734 -17943406 - L2 LINE L2 0 3272 3116 336 271 21 76 chrX 159031534 159031678 -17942462 - LTR16A1 LTR ERVL -296 161 26 2155 98 3 0 chrX 159031826 159032112 -17942028 - AluSp SINE Alu -24 289 3 24 0 0 0 chrX 159032625 159032649 -17941491 + AT_rich Low_complexity Low_complexity 1 24 0 202 353 47 55 chrX 159033633 159033868 -17940272 + L2 LINE L2 2654 2886 -428 613 294 45 5 chrX 159035005 159035206 -17938934 - MIR SINE MIR -40 222 14 426 192 32 214 chrX 159035371 159035652 -17938488 - MIR SINE MIR -10 252 23 444 244 32 49 chrX 159035718 159035841 -17938299 - L3 LINE CR1 -769 808 688 3958 211 51 45 chrX 159036315 159036891 -17937249 - L1MD2 LINE L1 -18 6735 6144 876 145 0 0 chrX 159036891 159037022 -17937118 - FLAM_C SINE Alu -2 131 1 3958 211 51 45 chrX 159037022 159037560 -17936580 - L1MD2 LINE L1 -609 6144 5611 736 220 55 49 chrX 159037563 159037908 -17936232 - L1MD2 LINE L1 -3466 3074 2728 259 228 7 21 chrX 159037908 159038053 -17936087 + (TA)n Simple_repeat Simple_repeat 2 144 0 606 238 44 6 chrX 159038183 159038364 -17935776 - L1MD2 LINE L1 -3960 2580 2393 2803 281 60 80 chrX 159038559 159040448 -17933692 - L1MD2 LINE L1 -4645 1895 44 2441 80 0 0 chrX 159040448 159040749 -17933391 - AluSq SINE Alu -12 301 1 2803 281 60 80 chrX 159040749 159040776 -17933364 - L1MD2 LINE L1 -6496 44 18 267 31 0 0 chrX 159041331 159041363 -17932777 + (TG)n Simple_repeat Simple_repeat 2 33 0 306 0 0 0 chrX 159041685 159041719 -17932421 + (TG)n Simple_repeat Simple_repeat 2 35 0 385 335 196 25 chrX 159041785 159042232 -17931908 - L2 LINE L2 -515 2799 2430 1248 184 35 0 chrX 159042232 159042460 -17931680 - MER46A DNA MER2_type 0 236 1 385 335 196 25 chrX 159042460 159042689 -17931451 - L2 LINE L2 -884 2430 2007 1392 212 7 26 chrX 159042906 159043213 -17930927 - AluJb SINE Alu -9 303 3 976 324 44 12 chrX 159047267 159047672 -17926468 + L2 LINE L2 962 1379 -1935 1156 284 65 20 chrX 159047685 159048386 -17925754 + L2 LINE L2 2293 3308 -5 200 275 29 43 chrX 159048911 159048980 -17925160 - L2 LINE L2 -19 3294 3227 380 225 14 0 chrX 159049228 159049299 -17924841 - MER90 LTR ERV1 -498 77 6 795 262 22 27 chrX 159049338 159049473 -17924667 + MER58A DNA MER1_type 1 136 -2284 2413 80 3 0 chrX 159049473 159049772 -17924368 + AluSc SINE Alu 1 300 -9 795 262 22 27 chrX 159049772 159049861 -17924279 + MER58A DNA MER1_type 136 224 0 4100 189 25 4 chrX 159050412 159051246 -17922894 - L1MB7 LINE L1 -1 6183 5332 377 259 12 0 chrX 159051246 159051327 -17922813 + MLT1D LTR MaLR 1 82 -423 2209 108 0 3 chrX 159051500 159051797 -17922343 - AluSg SINE Alu -14 296 1 24 0 0 0 chrX 159052134 159052158 -17921982 + AT_rich Low_complexity Low_complexity 1 24 0 499 264 52 11 chrX 159052847 159053019 -17921121 + MLT1E3 LTR MaLR 432 610 -14 7484 133 12 59 chrX 159053019 159053474 -17920666 - HSMAR2 DNA Mariner -2 1300 826 2205 97 3 0 chrX 159053474 159053763 -17920377 - AluSg SINE Alu -20 290 1 7484 133 12 59 chrX 159053763 159054669 -17919471 - HSMAR2 DNA Mariner -476 826 2 452 325 39 28 chrX 159055105 159055305 -17918835 + LTR16A1 LTR ERVL 146 351 -106 972 156 84 156 chrX 159055305 159055379 -17918761 + MLT1A1 LTR MaLR 1 79 -286 2088 119 0 10 chrX 159055379 159055672 -17918468 + AluSx SINE Alu 19 308 -4 972 156 84 156 chrX 159055672 159055989 -17918151 + MLT1A1 LTR MaLR 79 364 -1 452 325 39 28 chrX 159055989 159056043 -17918097 + LTR16A1 LTR ERVL 351 403 -54 244 291 9 73 chrX 159056761 159056871 -17917269 - MIR SINE MIR -19 243 141 2504 169 139 30 chrX 159057394 159058039 -17916101 - LTR48 LTR ERV1 -71 716 1 240 200 0 0 chrX 159058225 159058275 -17915865 + (CA)n Simple_repeat Simple_repeat 1 50 0 287 274 137 22 chrX 159058278 159058534 -17915606 - L1MC4 LINE L1 -91 7717 7474 2622 134 54 18 chrX 159058562 159059302 -17914838 + MER4E LTR ERV1 1 779 0 415 332 49 6 chrX 159059302 159059557 -17914583 - L1MC4a LINE L1 -451 7357 7154 863 195 0 26 chrX 159059700 159059854 -17914286 + FRAM SINE Alu 1 146 -30 189 74 0 0 chrX 159059857 159059884 -17914256 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 311 246 0 0 chrX 159060101 159060166 -17913974 + L1MC4 LINE L1 6638 6702 -1340 2814 185 60 71 chrX 159060392 159061127 -17913013 - LTR8A LTR ERV1 0 727 1 291 198 17 0 chrX 159061508 159061573 -17912567 - L1MC4 LINE L1 -589 7291 7154 23 33 0 0 chrX 159063184 159063214 -17910926 + AT_rich Low_complexity Low_complexity 1 30 0 1891 94 4 0 chrX 159063413 159063658 -17910482 - AluSp SINE Alu -5 308 63 264 111 0 0 chrX 159064415 159064460 -17909680 + (CA)n Simple_repeat Simple_repeat 2 46 0 49 52 0 0 chrX 159064845 159064922 -17909218 + AT_rich Low_complexity Low_complexity 1 77 0 21 36 0 0 chrX 159065423 159065451 -17908689 + AT_rich Low_complexity Low_complexity 1 28 0 457 277 31 62 chrX 159065462 159065657 -17908483 - MER5A DNA MER1_type 0 189 1 385 190 0 0 chrX 159065812 159065891 -17908249 + MER116 DNA Mariner 2 80 0 30 59 0 0 chrX 159065906 159065957 -17908183 + AT_rich Low_complexity Low_complexity 1 51 0 728 100 25 17 chrX 159066326 159066446 -17907694 - AluSc SINE Alu -188 121 1 1974 121 0 54 chrX 159067346 159067661 -17906479 + AluJb SINE Alu 1 298 -14 315 71 0 0 chrX 159068087 159068129 -17906011 + (TG)n Simple_repeat Simple_repeat 2 43 0 5536 239 54 36 chrX 159068129 159068488 -17905652 - L1MD2 LINE L1 -222 6397 6046 258 32 0 0 chrX 159068488 159068519 -17905621 + (TA)n Simple_repeat Simple_repeat 1 31 0 5536 239 54 36 chrX 159068519 159070212 -17903928 - L1MD2 LINE L1 -573 6046 4264 2040 122 7 0 chrX 159070212 159070524 -17903616 + AluSx SINE Alu 6 319 0 5536 239 54 36 chrX 159070524 159071693 -17902447 - L1MD2 LINE L1 -2355 4264 3117 1144 246 40 28 chrX 159071698 159072343 -17901797 - L1MD2 LINE L1 -3681 2725 2072 295 221 57 86 chrX 159072349 159072489 -17901651 - L1MD2 LINE L1 -4374 2032 1897 276 170 0 0 chrX 159072491 159072544 -17901596 + CT-rich Low_complexity Low_complexity 1 53 0 943 199 0 0 chrX 159072544 159072710 -17901430 - AluJb SINE Alu -18 294 129 1979 142 26 0 chrX 159072738 159073041 -17901099 - AluSx SINE Alu -1 311 1 263 222 0 0 chrX 159073048 159073111 -17901029 - L1MD2 LINE L1 -4476 1930 1868 2166 114 3 0 chrX 159073123 159073413 -17900727 - AluSc SINE Alu -18 291 1 6765 116 14 10 chrX 159073416 159074653 -17899487 - L1MA3 LINE L1 -2 6303 5062 8621 173 14 12 chrX 159074662 159076133 -17898007 - L1M1 LINE L1 -6053 1512 40 4581 234 43 59 chrX 159076132 159078089 -17896051 - L1MD2 LINE L1 -4517 1889 7 * 983 245 113 75 chrX 159078486 159079412 -17894728 - Charlie2 DNA MER1_type -49 2813 1852 507 273 26 32 chrX 159079411 159079565 -17894575 - Charlie2 DNA MER1_type -2538 324 172 * 24 0 0 0 chrX 159079764 159079788 -17894352 + AT_rich Low_complexity Low_complexity 1 24 0 4562 12 0 0 chrX 159079788 159080303 -17893837 - L1PA3 LINE L1 -3 6152 5638 22 0 0 0 chrX 159081706 159081728 -17892412 + AT_rich Low_complexity Low_complexity 1 22 0 739 62 0 0 chrX 159081728 159081825 -17892315 - L1MA1 LINE L1 -4 6298 6202 263 244 7 126 chrX 159082791 159082926 -17891214 + L2 LINE L2 1922 2040 -1274 1048 184 141 14 chrX 159083097 159083374 -17890766 + L1ME1 LINE L1 5833 6144 -22 1198 134 0 0 chrX 159083381 159083567 -17890573 - AluSq SINE Alu 0 305 120 714 67 115 10 chrX 159083653 159083757 -17890383 - AluSq SINE Alu -196 117 3 2207 89 3 7 chrX 159084925 159085216 -17888924 - AluSc SINE Alu -19 290 1 576 198 24 8 chrX 159085296 159085422 -17888718 + MER3 DNA MER1_type 70 197 -12 3190 222 77 2 chrX 159086100 159086291 -17887849 - L1MD2 LINE L1 -10 6349 6174 198 71 0 0 chrX 159086291 159086319 -17887821 + (TG)n Simple_repeat Simple_repeat 2 29 0 3190 222 77 2 chrX 159086319 159086948 -17887192 - L1MD2 LINE L1 -185 6174 5468 262 252 24 49 chrX 159086945 159087068 -17887072 - HAL1 LINE L1 -242 2265 2146 * 4193 129 1 8 chrX 159087079 159087745 -17886395 - L1MA2 LINE L1 0 7723 7062 11100 108 4 2 chrX 159087745 159089404 -17884736 + L1P LINE L1 2644 4306 -1840 10772 153 12 40 chrX 159089402 159091826 -17882314 - L1P3 LINE L1 -4046 2415 10 * 6492 174 23 8 chrX 159091832 159093158 -17880982 - L1MA2 LINE L1 -746 6819 5474 4683 169 13 8 chrX 159093156 159094811 -17879329 - L1MA2 LINE L1 -2984 4581 2921 * 2083 127 3 13 chrX 159094811 159095118 -17879022 - AluSx SINE Alu -8 304 1 24 85 0 0 chrX 159095658 159095717 -17878423 + AT_rich Low_complexity Low_complexity 1 59 0 21 57 0 0 chrX 159095730 159095765 -17878375 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chrX 159095822 159095868 -17878272 + AT_rich Low_complexity Low_complexity 1 46 0 536 212 66 35 chrX 159097059 159097285 -17876855 + L1MC4 LINE L1 5254 5486 -2322 987 245 21 13 chrX 159097286 159097523 -17876617 - MLT1E2 LTR MaLR -1 625 387 322 236 150 97 chrX 159097541 159097595 -17876545 - MLT1E2 LTR MaLR -345 281 231 2551 55 3 0 chrX 159097595 159097902 -17876238 + AluY SINE Alu 1 308 -3 322 236 150 97 chrX 159097902 159098114 -17876026 - MLT1E2 LTR MaLR -395 231 1 757 251 66 33 chrX 159098245 159098579 -17875561 + L1MC4 LINE L1 5598 5942 -1866 968 179 10 20 chrX 159098594 159098789 -17875351 + MER20 DNA MER1_type 27 219 0 325 299 97 0 chrX 159099425 159099579 -17874561 - MLT1J LTR MaLR -12 499 331 403 306 82 0 chrX 159099697 159099868 -17874272 - MLT1J LTR MaLR -290 156 6 1154 141 5 0 chrX 159100191 159100375 -17873765 - L1PB2 LINE L1 -3 6148 5964 1493 112 22 60 chrX 159100375 159100642 -17873498 - AluSx SINE Alu -14 298 42 26 88 0 0 chrX 159101016 159101084 -17873056 + AT_rich Low_complexity Low_complexity 1 68 0 6188 157 24 43 chrX 159101201 159103294 -17870846 + L1PA3 LINE L1 4104 6155 0 3502 100 2 18 chrX 159103294 159103831 -17870309 + L1MA1 LINE L1 5762 6302 0 426 238 19 38 chrX 159104950 159105055 -17869085 + MER5A DNA MER1_type 10 112 -77 198 0 0 0 chrX 159105091 159105113 -17869027 + (TG)n Simple_repeat Simple_repeat 1 22 0 345 274 151 0 chrX 159106516 159106622 -17867518 - L2 LINE L2 -9 3304 3183 644 189 21 161 chrX 159107038 159107323 -17866817 - L1ME3 LINE L1 -6 6156 5912 24 0 0 0 chrX 159107339 159107363 -17866777 + AT_rich Low_complexity Low_complexity 1 24 0 368 316 107 18 chrX 159109257 159109425 -17864715 + MIR SINE MIR 74 256 -6 2261 97 0 3 chrX 159109581 159109871 -17864269 + AluSc SINE Alu 1 289 -20 248 273 0 0 chrX 159109885 159109973 -17864167 + L1MC4 LINE L1 6614 6701 -1341 237 300 0 0 chrX 159109917 159110007 -17864133 - L1MC4 LINE L1 -1339 6703 6614 * 206 133 0 44 chrX 159110007 159110052 -17864088 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 248 242 44 44 chrX 159110052 159110143 -17863997 + L1MC4 LINE L1 6613 6703 -1339 621 195 0 35 chrX 159110146 159110320 -17863820 + (TATATG)n Simple_repeat Simple_repeat 1 168 0 310 286 0 22 chrX 159110320 159110411 -17863729 - L1MC4 LINE L1 -1340 6702 6614 232 345 0 0 chrX 159110415 159110502 -17863638 - L1MC4 LINE L1 -1339 6703 6617 293 310 6 0 chrX 159110510 159110668 -17863472 + (TA)n Simple_repeat Simple_repeat 1 159 0 1282 136 9 31 chrX 159110905 159111133 -17863007 + L1MA7 LINE L1 5888 6110 -181 316 70 0 0 chrX 159111133 159111176 -17862964 + Alu SINE Alu 1 43 -257 3547 179 30 24 chrX 159111639 159112360 -17861780 - L1MC1 LINE L1 -10 6323 5598 2570 247 22 46 chrX 159112620 159112908 -17861232 + L1MB3 LINE L1 2465 2758 -3388 2250 112 0 0 chrX 159112908 159113204 -17860936 + AluSx SINE Alu 1 296 -16 2570 247 22 46 chrX 159113204 159113778 -17860362 + L1MB3 LINE L1 2758 3300 -2846 2659 151 7 2 chrX 159113778 159114201 -17859939 - MSTA LTR MaLR 0 428 4 2570 247 22 46 chrX 159114201 159114381 -17859759 + L1MB3 LINE L1 3300 3483 -2663 4502 216 46 28 chrX 159114390 159115707 -17858433 + L1MB3 LINE L1 3898 5267 -916 4856 25 0 0 chrX 159115707 159116272 -17857868 + L1PA4 LINE L1 5585 6149 -6 4502 216 46 28 chrX 159116272 159117206 -17856934 + L1MB3 LINE L1 5267 6183 0 306 0 0 0 chrX 159117787 159117821 -17856319 + (CA)n Simple_repeat Simple_repeat 2 35 0 3994 130 38 9 chrX 159119348 159119477 -17854663 - MER39B LTR ERV1 -5 648 524 2148 119 19 58 chrX 159119477 159119694 -17854446 - THE1B LTR MaLR 0 364 167 2337 118 0 0 chrX 159119694 159119999 -17854141 + AluSg SINE Alu 1 305 -5 2148 119 19 58 chrX 159119999 159120160 -17853980 - THE1B LTR MaLR -197 167 1 3994 130 38 9 chrX 159120160 159120660 -17853480 - MER39B LTR ERV1 -129 524 1 2275 105 3 0 chrX 159120834 159121128 -17853012 - AluSp SINE Alu -18 295 1 2362 85 0 0 chrX 159121446 159121740 -17852400 - AluSx SINE Alu -15 297 4 2513 228 28 44 chrX 159122039 159122229 -17851911 - L1MC3 LINE L1 -686 7099 6907 2489 62 0 10 chrX 159122229 159122537 -17851603 - AluY SINE Alu -6 305 1 2513 228 28 44 chrX 159122537 159123111 -17851029 - L1MC3 LINE L1 -878 6907 6348 25 0 0 0 chrX 159125537 159125562 -17848578 + AT_rich Low_complexity Low_complexity 1 25 0 1881 115 0 61 chrX 159126390 159126702 -17847438 - AluSg SINE Alu -17 293 1 1104 114 23 0 chrX 159126776 159126951 -17847189 + L1MA6 LINE L1 6122 6300 0 2430 71 0 3 chrX 159127229 159127526 -17846614 + AluSq SINE Alu 1 296 -17 2809 104 10 0 chrX 159178349 159178764 -17795376 + L1PA8 LINE L1 5745 6163 -9 1125 125 11 17 chrX 159178798 159178974 -17795166 + AluSg/x SINE Alu 129 303 -9 2870 157 74 13 chrX 159178976 159179839 -17794301 + L1M1 LINE L1 3075 3968 -3597 4997 104 3 14 chrX 159180286 159181063 -17793077 - L1MA2 LINE L1 0 6304 5537 279 0 0 0 chrX 159181533 159181565 -17792575 + (TTTA)n Simple_repeat Simple_repeat 1 63 0 279 0 0 0 chrX 159181565 159181596 -17792544 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2285 93 0 0 chrX 159181598 159181889 -17792251 - AluSx SINE Alu -21 291 1 322 282 40 0 chrX 159181909 159182033 -17792107 - L1ME4a LINE L1 -2 6119 5991 24 32 0 0 chrX 159182787 159182818 -17791322 + AT_rich Low_complexity Low_complexity 1 31 0 244 354 45 39 chrX 159183228 159183406 -17790734 - MIR SINE MIR -64 198 20 1979 158 45 83 chrX 159183421 159183526 -17790614 + MER66B LTR ERV1 1 108 -378 2258 105 20 0 chrX 159183526 159183832 -17790308 - AluSx SINE Alu 0 312 1 1979 158 45 83 chrX 159183832 159184231 -17789909 + MER66B LTR ERV1 108 486 0 236 120 20 0 chrX 159184738 159184788 -17789352 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 982 86 7 0 chrX 159184983 159185123 -17789017 + L1M1 LINE L1 5652 5792 -512 * 8247 187 35 6 chrX 159185122 159186892 -17787248 - L1 LINE L1 -894 6671 4851 1173 188 80 67 chrX 159186926 159187481 -17786659 - LTR22B LTR ERVK 0 492 1 2022 197 176 11 chrX 159187481 159188095 -17786045 - L1 LINE L1 -2709 4856 4142 753 104 9 0 chrX 159188208 159188314 -17785826 - U6 snRNA snRNA 0 107 1 10484 154 32 4 chrX 159188314 159190095 -17784045 - L1 LINE L1 -4481 3084 1254 213 65 0 0 chrX 159190806 159190837 -17783303 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 182 61 0 chrX 159190881 159190947 -17783193 + T-rich Low_complexity Low_complexity 1 70 0 4113 116 3 0 chrX 159190951 159191554 -17782586 - L1PA16 LINE L1 -9 6157 5553 397 326 56 14 chrX 159192201 159192345 -17781795 - MER5A DNA MER1_type 0 189 40 2095 110 7 7 chrX 159192372 159192672 -17781468 - AluSg SINE Alu -10 300 1 191 222 273 20 chrX 159192742 159192841 -17781299 + MER5A DNA MER1_type 43 166 -23 * 518 226 28 0 chrX 159192766 159192872 -17781268 - MER5A DNA MER1_type -77 112 4 24788 144 31 81 chrX 159192971 159196533 -17777607 + L1MA2 LINE L1 4 3742 -2562 2166 94 0 42 chrX 159196533 159196840 -17777300 + AluY SINE Alu 1 294 -17 24788 144 31 81 chrX 159196840 159198071 -17776069 + L1MA2 LINE L1 3742 4359 -1945 2288 76 0 17 chrX 159198071 159198372 -17775768 + AluY SINE Alu 5 300 -11 24788 144 31 81 chrX 159198372 159200226 -17773914 + L1MA2 LINE L1 4359 6304 0 1798 188 14 0 chrX 159200425 159200770 -17773370 + L1PB4 LINE L1 5804 6153 -3 190 341 130 29 chrX 159201710 159201848 -17772292 - L2 LINE L2 -205 3067 2916 5108 176 21 14 chrX 159201849 159202769 -17771371 + L1PA13 LINE L1 1140 2065 -4722 1330 103 0 11 chrX 159202769 159202954 -17771186 + AluY SINE Alu 39 221 -90 261 0 0 0 chrX 159203093 159203122 -17771018 + (T)n Simple_repeat Simple_repeat 1 29 0 2033 212 2 7 chrX 159203122 159203579 -17770561 - L1 LINE L1 -1439 4707 4253 374 276 8 24 chrX 159203569 159203656 -17770484 + L1 LINE L1 2964 3050 -3096 * 2046 140 3 10 chrX 159203656 159203964 -17770176 + AluSx SINE Alu 2 307 -5 374 276 8 24 chrX 159203964 159204003 -17770137 + L1 LINE L1 3050 3088 -3058 11597 74 18 7 chrX 159204003 159205604 -17768536 - L1P LINE L1 -3385 2761 1143 6982 58 2 3 chrX 159205608 159206854 -17767286 + L1PA6 LINE L1 4910 6154 0 4549 240 22 3 chrX 159206863 159207991 -17766149 + L1P LINE L1 3095 4243 -1903 1125 199 14 7 chrX 159207989 159208257 -17765883 - L1M3 LINE L1 -570 5613 5352 * 599 251 20 12 chrX 159208735 159208902 -17765238 + MIR SINE MIR 93 262 0 227 337 11 0 chrX 159209126 159209215 -17764925 + L1MC4 LINE L1 6614 6703 -1339 * 237 264 11 22 chrX 159209187 159209278 -17764862 - L1MC4 LINE L1 -1339 6703 6614 408 314 85 5 chrX 159209963 159210186 -17763954 - L1MEd LINE L1 -5099 1020 780 378 291 55 0 chrX 159210307 159210417 -17763723 - MIR SINE MIR -111 151 36 267 308 58 17 chrX 159210877 159210997 -17763143 - MIR SINE MIR -110 152 28 282 95 0 0 chrX 159211589 159211631 -17762509 + (CA)n Simple_repeat Simple_repeat 2 43 0 191 36 36 0 chrX 159211632 159211660 -17762480 + (TA)n Simple_repeat Simple_repeat 2 30 0 466 268 134 6 chrX 159211747 159211911 -17762229 - MER5A DNA MER1_type 0 189 5 311 343 29 7 chrX 159213111 159213248 -17760892 - MER69A DNA AcHobo -36 141 2 1544 193 17 60 chrX 159213818 159214171 -17759969 - MLT1B LTR MaLR -52 338 1 4640 111 32 6 chrX 159214309 159215032 -17759108 + L1MA1 LINE L1 5560 6301 -1 718 197 7 0 chrX 159215043 159215190 -17758950 + L1MB7 LINE L1 5474 5621 -563 655 167 18 0 chrX 159215190 159215298 -17758842 + L1MC1 LINE L1 6218 6333 0 2342 206 36 4 chrX 159215298 159215851 -17758289 + L1MB7 LINE L1 5605 6176 -8 339 274 0 20 chrX 159216234 159216336 -17757804 - MER5A DNA MER1_type -81 108 9 283 266 133 71 chrX 159216730 159217038 -17757102 + L1MD3 LINE L1 31 357 -5688 1434 194 70 85 chrX 159217121 159217523 -17756617 - MSTD LTR MaLR 0 396 1 285 146 0 0 chrX 159217615 159217663 -17756477 + (A)n Simple_repeat Simple_repeat 1 48 0 1977 239 74 36 chrX 159217717 159218476 -17755664 + L1MD3 LINE L1 4649 5436 -1128 201 213 0 0 chrX 159218489 159218536 -17755604 + (TA)n Simple_repeat Simple_repeat 2 48 0 773 259 19 8 chrX 159218540 159218799 -17755341 + L1MD3 LINE L1 5557 5818 -746 * 1785 264 82 50 chrX 159218796 159218859 -17755281 + L1MD3 LINE L1 6023 6083 -2330 1678 107 0 8 chrX 159218859 159219111 -17755029 + L1PB1 LINE L1 5899 6148 -3 1785 264 82 50 chrX 159219111 159219997 -17754143 + L1MD3 LINE L1 6083 7002 -1411 830 161 43 27 chrX 159220387 159220573 -17753567 + L1MA9 LINE L1 6124 6312 0 2297 88 3 11 chrX 159221638 159222057 -17752083 - L1M1 LINE L1 -737 5565 5150 931 195 44 0 chrX 159222068 159222306 -17751834 - L1M4 LINE L1 -699 5479 5232 474 309 48 10 chrX 159222306 159222513 -17751627 - L1M4 LINE L1 -2225 3921 3707 252 290 105 41 chrX 159222790 159223352 -17750788 + L1M4 LINE L1 3240 3837 -2309 29 60 0 0 chrX 159223352 159223402 -17750738 + AT_rich Low_complexity Low_complexity 1 50 0 346 306 77 10 chrX 159223750 159223946 -17750194 + HAL1b LINE L1 376 584 -764 9487 79 6 11 chrX 159223978 159226058 -17748082 + L1PA7 LINE L1 4089 6164 0 210 162 0 0 chrX 159226067 159226104 -17748036 + A-rich Low_complexity Low_complexity 1 37 0 319 280 30 10 chrX 159226187 159226287 -17747853 + HAL1b LINE L1 760 861 -487 31 0 0 0 chrX 159226678 159226709 -17747431 + AT_rich Low_complexity Low_complexity 1 31 0 438 326 0 15 chrX 159226794 159226929 -17747211 + L2 LINE L2 3179 3311 -2 27 0 0 0 chrX 159227246 159227273 -17746867 + AT_rich Low_complexity Low_complexity 1 27 0 16756 187 29 10 chrX 159227281 159230440 -17743700 + L1M1 LINE L1 19 3237 -4328 16240 171 17 11 chrX 159230555 159233976 -17740164 + L1PA13 LINE L1 3466 6910 -672 2364 83 0 0 chrX 159233976 159234277 -17739863 + AluSc SINE Alu 1 301 -8 16240 171 17 11 chrX 159234277 159234955 -17739185 + L1PA13 LINE L1 6910 7582 0 287 310 65 47 chrX 159235303 159235535 -17738605 - L2 LINE L2 -933 2381 2146 2822 169 40 0 chrX 159236604 159237126 -17737014 - L1MC1 LINE L1 0 6333 5791 916 164 18 111 chrX 159237147 159237372 -17736768 + MLT1A1 LTR MaLR 162 365 0 192 262 93 84 chrX 159237376 159237483 -17736657 - L2 LINE L2 -28 3285 3178 671 290 82 50 chrX 159237500 159237817 -17736323 - L2 LINE L2 -107 3206 2880 205 362 33 13 chrX 159238822 159238974 -17735166 - MIR SINE MIR -68 194 40 204 115 0 0 chrX 159240220 159240246 -17733894 + (T)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chrX 159240588 159240611 -17733529 + (T)n Simple_repeat Simple_repeat 1 23 0 1328 291 19 5 chrX 159240611 159240986 -17733154 + LTR16C LTR ERVL 112 491 0 424 273 72 0 chrX 159241606 159241745 -17732395 - MER5C DNA MER1_type 0 324 176 358 316 17 31 chrX 159243925 159244095 -17730045 + MLT1J2 LTR MaLR 64 251 -260 1265 216 12 4 chrX 159245554 159245808 -17728332 + L1MA2 LINE L1 1330 1585 -5980 * 5253 125 31 75 chrX 159245806 159246899 -17727241 + L1MA2 LINE L1 2045 3089 -4476 13315 197 31 9 chrX 159247002 159250363 -17723777 + L1MA2 LINE L1 3321 6756 -818 25 0 0 0 chrX 159250367 159250392 -17723748 + AT_rich Low_complexity Low_complexity 1 25 0 5449 148 35 1 chrX 159250479 159251453 -17722687 + L1MA2 LINE L1 6739 7723 0 21 57 0 0 chrX 159251874 159251909 -17722231 + AT_rich Low_complexity Low_complexity 1 35 0 269 309 84 53 chrX 159254188 159254229 -17719911 - MIR3 SINE MIR -27 235 197 756 159 43 0 chrX 159254229 159254367 -17719773 - L1PA13 LINE L1 0 6163 6020 269 309 84 53 chrX 159254367 159254558 -17719582 - MIR3 SINE MIR -65 197 1 2279 102 0 3 chrX 159254673 159254986 -17719154 - AluSq SINE Alu -1 312 1 38 61 0 0 chrX 159255232 159255298 -17718842 + AT_rich Low_complexity Low_complexity 1 66 0 1234 182 70 102 chrX 159255339 159255740 -17718400 - MLT1B LTR MaLR -2 388 1 21 0 0 0 chrX 159255783 159255804 -17718336 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chrX 159258583 159258627 -17715513 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chrX 159259220 159259245 -17714895 + AT_rich Low_complexity Low_complexity 1 25 0 2562 187 45 22 chrX 159259250 159259785 -17714355 - MLT2B3 LTR ERVL -7 547 1 21 0 0 0 chrX 159259849 159259870 -17714270 + AT_rich Low_complexity Low_complexity 1 21 0 261 322 59 17 chrX 159260389 159260507 -17713633 - MIR3 SINE MIR -48 160 38 1763 181 24 134 chrX 159262653 159262869 -17711271 + MLT2B3 LTR ERVL 3 241 -313 189 74 0 0 chrX 159262869 159262896 -17711244 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1763 181 24 134 chrX 159262896 159263239 -17710901 + MLT2B3 LTR ERVL 241 490 -64 405 58 0 0 chrX 159263239 159263291 -17710849 + (TG)n Simple_repeat Simple_repeat 1 52 0 1763 181 24 134 chrX 159263291 159263350 -17710790 + MLT2B3 LTR ERVL 490 554 0 22 0 0 0 chrX 159264517 159264539 -17709601 + AT_rich Low_complexity Low_complexity 1 22 0 2218 68 0 7 chrX 159264935 159265214 -17708926 - AluSq SINE Alu -2 311 35 2212 182 20 29 chrX 159266133 159266622 -17707518 - MER31A LTR ERV1 0 485 1 316 355 135 28 chrX 159266773 159267055 -17707085 + L2 LINE L2 2563 2874 -440 363 44 0 0 chrX 159267059 159267104 -17707036 + (TG)n Simple_repeat Simple_repeat 2 46 0 5345 192 94 9 chrX 159267410 159268536 -17705604 - L1M1 LINE L1 -6307 1258 62 292 281 52 48 chrX 159268685 159268895 -17705245 - L1ME LINE L1 -374 5747 5537 1276 204 47 25 chrX 159268956 159269231 -17704909 + AluJo SINE Alu 15 295 -17 23 0 0 0 chrX 159269426 159269449 -17704691 + AT_rich Low_complexity Low_complexity 1 23 0 1062 153 23 42 chrX 159269897 159270113 -17704027 - L1MA9 LINE L1 -38 6274 6063 682 271 52 10 chrX 159270384 159270672 -17703468 - HAL1 LINE L1 -831 1676 1377 302 205 0 39 chrX 159270680 159270758 -17703382 + L1MCa LINE L1 1995 2069 -4357 4241 168 19 2 chrX 159270791 159271961 -17702179 - L1PB4 LINE L1 -12 6144 4935 2391 200 47 17 chrX 159271961 159272540 -17701600 - L1PB4 LINE L1 -1497 4649 4054 * 2578 190 31 30 chrX 159272509 159273184 -17700956 - L1PB4 LINE L1 -2532 3614 2939 244 292 97 60 chrX 159273181 159273685 -17700455 - HAL1 LINE L1 -1160 1347 825 * 222 213 0 0 chrX 159275140 159275187 -17698953 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 29 47 0 0 chrX 159275187 159275230 -17698910 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chrX 159275326 159275346 -17698794 + (TAA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chrX 159276161 159276184 -17697956 + AT_rich Low_complexity Low_complexity 1 23 0 413 284 93 55 chrX 159276209 159276293 -17697847 + HAL1 LINE L1 2238 2317 -190 1766 230 42 32 chrX 159276293 159276789 -17697351 + MLT1D LTR MaLR 5 505 0 413 284 93 55 chrX 159276789 159276961 -17697179 + HAL1 LINE L1 2317 2504 -3 3049 246 129 84 chrX 159277477 159277985 -17696155 - L1MC3 LINE L1 -33 7752 7268 299 288 25 0 chrX 159277985 159278065 -17696075 - MLT1F1 LTR MaLR -433 134 53 3049 246 129 84 chrX 159278065 159279139 -17695001 - L1MC3 LINE L1 -517 7268 6017 28 79 0 0 chrX 159279584 159279647 -17694493 + AT_rich Low_complexity Low_complexity 1 63 0 605 142 44 9 chrX 159279671 159279693 -17694447 - L1MA9 LINE L1 -22 6290 6269 2574 159 76 25 chrX 159279693 159280250 -17693890 - L1MA9 LINE L1 -44 6122 5582 1054 133 0 0 chrX 159281065 159281257 -17692883 - AluSg/x SINE Alu 0 324 133 1564 221 46 79 chrX 159283163 159283680 -17690460 - MLT1E1 LTR MaLR 0 654 155 611 224 92 20 chrX 159283694 159283846 -17690294 - MER20 DNA MER1_type -54 165 3 254 305 123 31 chrX 159283847 159284487 -17689653 + L1M4 LINE L1 2272 2970 -3176 336 289 70 13 chrX 159284863 159285161 -17688979 + L1M4 LINE L1 3141 3455 -2691 2009 94 0 14 chrX 159285398 159285675 -17688465 + AluSg SINE Alu 31 303 -7 801 347 71 64 chrX 159285699 159286922 -17687218 + L1M4 LINE L1 3788 5019 -1127 22 99 0 0 chrX 159286942 159287013 -17687127 + AT_rich Low_complexity Low_complexity 1 71 0 9461 143 14 33 chrX 159287018 159288605 -17685535 - THE1-int LTR MaLR -20 1560 4 2129 186 36 0 chrX 159288607 159289048 -17685092 - L1 LINE L1 -1767 5798 5342 1618 157 8 8 chrX 159289048 159289316 -17684824 - L1 LINE L1 -6424 1141 874 24 32 0 0 chrX 159290022 159290053 -17684087 + AT_rich Low_complexity Low_complexity 1 31 0 552 280 161 14 chrX 159290976 159291194 -17682946 + MIR SINE MIR 2 251 -11 531 78 0 26 chrX 159292464 159292541 -17681599 + MADE1 DNA Mariner 6 80 0 188 200 0 67 chrX 159292754 159292814 -17681326 - L2 LINE L2 -1254 2060 2005 398 312 22 7 chrX 159292940 159293078 -17681062 - MIR SINE MIR -109 153 14 25 31 0 0 chrX 159293101 159293133 -17681007 + AT_rich Low_complexity Low_complexity 1 32 0 369 0 0 0 chrX 159293238 159293279 -17680861 + (CA)n Simple_repeat Simple_repeat 1 41 0 2332 137 8 3 chrX 159293545 159293904 -17680236 + THE1B LTR MaLR 3 363 -1 10181 95 30 57 chrX 159293905 159295529 -17678611 + THE1B-int LTR MaLR 1 1580 0 2397 130 11 3 chrX 159295529 159295890 -17678250 + THE1B LTR MaLR 1 364 0 23 54 0 0 chrX 159298302 159298339 -17675801 + AT_rich Low_complexity Low_complexity 1 37 0 2493 57 0 0 chrX 159298524 159298823 -17675317 - AluY SINE Alu -12 299 1 23 33 0 0 chrX 159298832 159298862 -17675278 + AT_rich Low_complexity Low_complexity 1 30 0 6396 83 18 9 chrX 159298894 159299877 -17674263 - L1PA11 LINE L1 0 6174 5175 502 347 117 6 chrX 159300432 159300784 -17673356 + LTR16A LTR ERVL 60 450 0 2108 169 32 43 chrX 159303514 159303951 -17670189 + MSTB1 LTR MaLR 1 432 0 2008 135 132 5 chrX 159304748 159305127 -17669013 + MSTA LTR MaLR 2 428 0 347 273 65 32 chrX 159306342 159306419 -17667721 + L1MC4 LINE L1 7238 7311 -731 1055 155 49 45 chrX 159306419 159306664 -17667476 + L1MB7 LINE L1 5927 6172 -12 347 273 65 32 chrX 159306664 159306740 -17667400 + L1MC4 LINE L1 7311 7396 -646 21 0 0 0 chrX 159307075 159307096 -17667044 + AT_rich Low_complexity Low_complexity 1 21 0 251 333 61 32 chrX 159307520 159307766 -17666374 - LTR16A1 LTR ERVL -61 396 144 754 329 138 36 chrX 159308357 159308989 -17665151 + L3 LINE CR1 634 1329 -248 770 317 131 26 chrX 159310820 159311485 -17662655 + L2 LINE L2 1960 2694 -620 2265 58 41 3 chrX 159311485 159311776 -17662364 - AluY SINE Alu -9 302 1 382 363 9 0 chrX 159312174 159312287 -17661853 + L2 LINE L2 3155 3268 -4 2287 79 10 7 chrX 159312501 159312804 -17661336 + AluSc SINE Alu 1 304 -5 236 250 28 0 chrX 159313107 159313179 -17660961 + (TTA)n Simple_repeat Simple_repeat 3 76 0 24 0 0 0 chrX 159313245 159313269 -17660871 + AT_rich Low_complexity Low_complexity 1 24 0 386 355 17 12 chrX 159313397 159313569 -17660571 - MIR SINE MIR -1 261 89 318 237 89 37 chrX 159314162 159314297 -17659843 - MER119 DNA MER1_type -1 582 441 * 342 268 87 39 chrX 159314280 159314407 -17659733 - MER119 DNA MER1_type -450 133 1 317 247 25 12 chrX 159315590 159315671 -17658469 + MIR3 SINE MIR 75 156 -52 470 220 23 15 chrX 159316621 159316753 -17657387 - L1MA7 LINE L1 -4 6287 6155 * 3441 194 36 10 chrX 159316745 159317213 -17656927 - L1MA8 LINE L1 -235 6056 5602 2063 118 0 0 chrX 159317213 159317537 -17656603 - AluSg SINE Alu 0 324 1 3441 194 36 10 chrX 159317537 159317556 -17656584 - L1MA8 LINE L1 -689 5602 5585 3607 147 30 2 chrX 159317556 159318182 -17655958 - L1PA16 LINE L1 -9 6157 5514 1589 22 0 0 chrX 159318190 159318375 -17655765 - L1PA4 LINE L1 0 6155 5971 3441 194 36 10 chrX 159318375 159318833 -17655307 - L1MA8 LINE L1 -712 5579 5070 266 227 191 0 chrX 159318990 159319100 -17655040 - L1ME4a LINE L1 -23 6098 5968 363 344 46 0 chrX 159319292 159319423 -17654717 - MIR SINE MIR -107 155 19 222 128 0 0 chrX 159319447 159319486 -17654654 + (TG)n Simple_repeat Simple_repeat 2 40 0 1936 179 0 12 chrX 159319568 159319893 -17654247 - MLT1A1 LTR MaLR 0 365 45 1261 228 48 3 chrX 159319904 159320220 -17653920 - L1MA9 LINE L1 0 6312 5983 248 294 26 98 chrX 159320437 159320631 -17653509 - L1M3a LINE L1 -5775 180 1 308 109 0 55 chrX 159320638 159320693 -17653447 - MLT1A1 LTR MaLR -312 53 2 6003 227 39 68 chrX 159320694 159322415 -17651725 - MLT1B-int LTR MaLR 0 1735 110 340 192 68 0 chrX 159322407 159322480 -17651660 - MLT-int LTR MaLR -1506 229 152 * 1072 160 35 48 chrX 159322480 159322711 -17651429 - MLT1A1-int LTR MaLR -1506 229 2 962 163 0 12 chrX 159322715 159322875 -17651265 - MLT1A1 LTR MaLR -2 363 206 385 284 155 40 chrX 159322895 159323191 -17650949 - HAL1 LINE L1 -1434 1073 744 291 272 72 24 chrX 159323469 159323594 -17650546 + MIR SINE MIR 117 247 -15 23 33 0 0 chrX 159323706 159323736 -17650404 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chrX 159324017 159324058 -17650082 + AT_rich Low_complexity Low_complexity 1 41 0 327 341 28 34 chrX 159324767 159324943 -17649197 + L2 LINE L2 2457 2631 -683 319 390 102 43 chrX 159325140 159325560 -17648580 + L2 LINE L2 2828 3272 0 1850 284 60 8 chrX 159326126 159326643 -17647497 - REP3 LTR ERV -18 544 1 204 239 0 0 chrX 159327659 159327705 -17646435 - MIR SINE MIR -12 250 205 2250 98 10 0 chrX 159328626 159328932 -17645208 - AluSc SINE Alu 0 309 1 23 54 0 0 chrX 159329122 159329159 -17644981 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 159330324 159330345 -17643795 + AT_rich Low_complexity Low_complexity 1 21 0 3827 255 63 35 chrX 159330570 159331410 -17642730 - L1M4b LINE L1 -2369 4588 3773 2075 120 3 0 chrX 159331410 159331694 -17642446 - AluSq SINE Alu -26 287 3 3827 255 63 35 chrX 159331694 159332389 -17641751 - L1M4b LINE L1 -3184 3773 3099 2465 181 27 16 chrX 159332389 159332563 -17641577 - L1MA10 LINE L1 0 6334 6163 180 0 0 0 chrX 159332563 159332583 -17641557 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2465 181 27 16 chrX 159332583 159332959 -17641181 - L1MA10 LINE L1 -171 6163 5778 3827 255 63 35 chrX 159332959 159333419 -17640721 - L1M4b LINE L1 -3858 3099 2583 1604 219 18 25 chrX 159333419 159333812 -17640328 - MLT1B LTR MaLR 0 390 1 3827 255 63 35 chrX 159333812 159333919 -17640221 - L1M4b LINE L1 -4374 2583 2480 4414 263 76 34 chrX 159333941 159335759 -17638381 - L1M4b LINE L1 -4949 1906 21 570 286 104 20 chrX 159335768 159336321 -17637819 - L1M4 LINE L1 -3778 2866 2283 1212 56 31 0 chrX 159336356 159336518 -17637622 - BC200 scRNA scRNA -33 167 1 1634 268 43 63 chrX 159336596 159337463 -17636677 - L1M4 LINE L1 -4554 2092 1244 1056 275 78 59 chrX 159337535 159338077 -17636063 - L1M4 LINE L1 -5964 578 27 18280 27 1 0 chrX 159338089 159341038 -17633102 - L1PA3 LINE L1 0 6155 3205 322 212 103 20 chrX 159541436 159541582 -17432558 + L2 LINE L2 3091 3248 -65 2335 91 3 0 chrX 159541809 159542106 -17432034 - AluSg SINE Alu -12 298 1 22 35 0 0 chrX 159542109 159542138 -17432002 + AT_rich Low_complexity Low_complexity 1 29 0 785 227 89 10 chrX 159542147 159542350 -17431790 + MER20 DNA MER1_type 1 219 0 378 257 148 28 chrX 159542354 159542728 -17431412 - L1PA10 LINE L1 -340 5828 5401 336 198 83 91 chrX 159542905 159543026 -17431114 + MER20 DNA MER1_type 1 120 -99 1912 129 13 26 chrX 159543126 159543428 -17430712 - AluSx SINE Alu -14 298 1 195 325 44 18 chrX 159543435 159543549 -17430591 - L2 LINE L2 -969 2345 2229 2064 85 34 30 chrX 159546937 159547232 -17426908 - AluSg1 SINE Alu -13 296 1 1559 267 61 55 chrX 159547466 159547815 -17426325 + L2 LINE L2 2328 2674 -639 2163 100 0 47 chrX 159547815 159548135 -17426005 - AluSx SINE Alu -7 305 1 1559 267 61 55 chrX 159548135 159548230 -17425910 + L2 LINE L2 2674 2767 -546 934 195 18 53 chrX 159548230 159548456 -17425684 + MER20 DNA MER1_type 1 218 -1 1559 267 61 55 chrX 159548456 159548976 -17425164 + L2 LINE L2 2767 3298 -15 2538 74 3 0 chrX 159550344 159550654 -17423486 + AluSx SINE Alu 1 311 -1 1542 168 43 20 chrX 159550678 159550981 -17423159 + L1MB4 LINE L1 5865 6174 -6 507 195 139 6 chrX 159551643 159551847 -17422293 + L1MD3 LINE L1 7548 7724 -271 976 142 69 64 chrX 159551847 159552065 -17422075 - MER20 DNA MER1_type 0 219 1 507 195 139 6 chrX 159552065 159552112 -17422028 + L1MD3 LINE L1 7724 7961 -34 183 42 0 0 chrX 159554465 159554489 -17419651 + (TTG)n Simple_repeat Simple_repeat 1 24 0 2145 113 7 0 chrX 159554665 159554965 -17419175 + AluSx SINE Alu 2 303 -9 203 182 0 23 chrX 159555181 159555225 -17418915 + T-rich Low_complexity Low_complexity 4 46 0 207 244 0 0 chrX 159555327 159555405 -17418735 + CT-rich Low_complexity Low_complexity 3 80 0 315 85 0 0 chrX 159558795 159558842 -17415298 + MADE1 DNA Mariner 31 77 -3 2028 114 27 30 chrX 159558865 159559163 -17414977 - AluJb SINE Alu -15 297 1 29 28 0 0 chrX 159559699 159559735 -17414405 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chrX 159560574 159560598 -17413542 + (TA)n Simple_repeat Simple_repeat 1 24 0 251 261 15 0 chrX 159561445 159561510 -17412630 + MLT1G LTR MaLR 13 78 -512 1063 205 54 31 chrX 159561543 159561912 -17412228 + L1MD3 LINE L1 7248 7915 -80 453 188 92 135 chrX 159561919 159562148 -17411992 - MER20 DNA MER1_type 0 219 1 233 179 125 0 chrX 159562149 159562205 -17411935 + L1MD3 LINE L1 7916 7978 -17 226 222 0 0 chrX 159562207 159562227 -17411913 + (TA)n Simple_repeat Simple_repeat 2 21 -34 1694 101 76 153 chrX 159562227 159562419 -17411721 + THE1C LTR MaLR 1 147 -228 1754 148 0 0 chrX 159562419 159562675 -17411465 - AluSx SINE Alu -56 256 1 1694 101 76 153 chrX 159562675 159562888 -17411252 + THE1C LTR MaLR 147 375 0 226 222 0 0 chrX 159562888 159562921 -17411219 + (TA)n Simple_repeat Simple_repeat 20 55 0 1954 142 10 27 chrX 159563102 159563397 -17410743 + AluJo SINE Alu 2 291 -21 230 167 0 0 chrX 159563478 159563514 -17410626 - tRNA-Arg-AGA tRNA tRNA -40 36 1 1944 163 0 3 chrX 159566243 159566556 -17407584 - AluSx SINE Alu 0 312 1 283 248 40 94 chrX 159567230 159567379 -17406761 + L2 LINE L2 3108 3248 -65 44 114 0 0 chrX 159567514 159567733 -17406407 + AT_rich Low_complexity Low_complexity 1 219 0 696 236 94 15 chrX 159567825 159567887 -17406253 + MER20 DNA MER1_type 1 57 -162 2105 119 0 10 chrX 159567887 159568190 -17405950 - AluSx SINE Alu 0 312 13 696 236 94 15 chrX 159568190 159568330 -17405810 + MER20 DNA MER1_type 57 219 0 1873 156 19 7 chrX 159568347 159568655 -17405485 - AluSx SINE Alu 0 312 1 380 237 96 48 chrX 159568655 159569026 -17405114 - L1M2 LINE L1 -386 5780 5401 578 200 67 67 chrX 159569203 159569368 -17404772 + MER20 DNA MER1_type 1 165 -54 234 153 68 17 chrX 159569398 159569457 -17404683 + MER20 DNA MER1_type 158 219 0 546 185 0 144 chrX 159572184 159572330 -17401810 + MER20 DNA MER1_type 1 125 -94 1062 229 75 20 chrX 159572374 159572732 -17401408 - LTR37A LTR ERV1 -4 422 45 1027 208 141 30 chrX 159573791 159574161 -17399979 - L1M4 LINE L1 -2787 3359 2949 192 77 0 0 chrX 159574463 159574489 -17399651 + (GA)n Simple_repeat Simple_repeat 1 26 0 1782 102 105 63 chrX 159574788 159574899 -17399241 + AluJb SINE Alu 1 106 -206 2286 104 7 0 chrX 159574899 159575198 -17398942 + AluSx SINE Alu 1 301 -11 2321 93 0 28 chrX 159575198 159575519 -17398621 + AluSq SINE Alu 1 312 -1 1782 102 105 63 chrX 159575519 159575691 -17398449 + AluJb SINE Alu 105 297 -15 474 133 0 56 chrX 159576216 159576306 -17397834 + L1PB4 LINE L1 6059 6143 -13 23 0 0 0 chrX 159576526 159576549 -17397591 + AT_rich Low_complexity Low_complexity 1 23 0 2312 99 7 3 chrX 159576917 159577221 -17396919 - AluSx SINE Alu -7 305 1 599 291 57 0 chrX 159577284 159577442 -17396698 - MER20 DNA MER1_type 0 219 53 22 0 0 0 chrX 159578099 159578121 -17396019 + AT_rich Low_complexity Low_complexity 1 22 0 1894 149 14 3 chrX 159578556 159578852 -17395288 + AluJb SINE Alu 1 299 -13 2752 195 18 35 chrX 159578921 159579485 -17394655 + MLT2B3 LTR ERVL 1 554 0 1827 93 135 0 chrX 159580391 159580650 -17393490 + AluSg SINE Alu 1 294 -16 2527 76 3 9 chrX 159581755 159582070 -17392070 - AluSp SINE Alu 0 313 1 2554 69 7 0 chrX 159582070 159582374 -17391766 - AluSq SINE Alu -7 306 1 1787 164 35 3 chrX 159582558 159582845 -17391295 + AluJb SINE Alu 1 296 -16 656 247 37 0 chrX 159582940 159583102 -17391038 + MER117 DNA MER1_type 4 171 -26 2157 106 3 0 chrX 159583192 159583498 -17390642 + AluSp SINE Alu 1 307 0 508 310 83 31 chrX 159583549 159583750 -17390390 + L2 LINE L2 2857 3069 -244 231 303 174 7 chrX 159583750 159583905 -17390235 - MER5A DNA MER1_type 0 189 9 2162 98 7 0 chrX 159583908 159584212 -17389928 + AluSx SINE Alu 6 311 0 539 301 74 5 chrX 159584240 159584443 -17389697 + L2 LINE L2 3095 3311 -2 2394 99 3 3 chrX 159584645 159584958 -17389182 - AluSq SINE Alu 0 313 1 1967 129 0 11 chrX 159585781 159586068 -17388072 - AluSx SINE Alu -28 284 1 4332 62 50 27 chrX 159586342 159586936 -17387204 + LTR14B LTR ERVK 1 608 0 616 273 12 6 chrX 159586987 159587148 -17386992 + MER117 DNA MER1_type 6 167 -30 2300 99 16 3 chrX 159587441 159587745 -17386395 - AluSx SINE Alu -4 308 1 1325 181 4 0 chrX 159588326 159588552 -17385588 + AluJb SINE Alu 85 311 -1 704 109 0 0 chrX 159589151 159589252 -17384888 + L1PA15 LINE L1 6046 6146 -19 1893 155 9 0 chrX 159589255 159589572 -17384568 + L1 LINE L1 4547 4866 -1280 2392 102 0 3 chrX 159589788 159590101 -17384039 - AluSx SINE Alu 0 312 1 920 191 29 12 chrX 159590236 159590409 -17383731 + MER45A DNA AcHobo 3 178 0 1175 238 100 6 chrX 159590715 159591026 -17383114 - MER58B DNA MER1_type -1 340 1 199 171 0 0 chrX 159591048 159591083 -17383057 + L2 LINE L2 3221 3255 -17 2250 151 20 20 chrX 159592041 159592431 -17381709 - MLT1B LTR MaLR 0 390 1 304 266 85 62 chrX 159592793 159592970 -17381170 + L2 LINE L2 2915 3095 -218 1783 187 3 10 chrX 159593502 159593802 -17380338 - AluJo SINE Alu -14 298 1 381 194 112 0 chrX 159594878 159594976 -17379164 + L1ME LINE L1 5599 5707 -463 218 182 0 0 chrX 159594996 159595029 -17379111 + MIR SINE MIR 219 251 -11 468 181 85 0 chrX 159595434 159595528 -17378612 + MER3 DNA MER1_type 1 102 -107 21 0 0 0 chrX 159595864 159595885 -17378255 + AT_rich Low_complexity Low_complexity 1 21 0 1700 102 146 0 chrX 159596001 159596255 -17377885 + AluSq SINE Alu 1 291 -22 315 71 0 0 chrX 159596257 159596299 -17377841 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 1358 85 0 0 chrX 159596866 159597043 -17377097 + L1PA15 LINE L1 5985 6161 -4 1635 161 12 56 chrX 159598057 159598380 -17375760 - AluJo SINE Alu 0 312 4 31 0 0 0 chrX 159598463 159598494 -17375646 + AT_rich Low_complexity Low_complexity 1 31 0 246 310 120 34 chrX 159598554 159598880 -17375260 - L1MC/D LINE L1 -2151 5657 5304 2174 98 20 0 chrX 159598930 159599226 -17374914 - AluSx SINE Alu -10 302 1 516 298 88 63 chrX 159599313 159599837 -17374303 - L1MC/D LINE L1 -1924 4222 3686 286 272 5 53 chrX 159600416 159600622 -17373518 - L1MC/D LINE L1 -3118 3028 2833 998 118 51 41 chrX 159600819 159601014 -17373126 - L1PA16 LINE L1 -2 6164 5968 2152 131 0 0 chrX 159601592 159601889 -17372251 - AluSx SINE Alu -5 307 11 1225 127 18 57 chrX 159602903 159603131 -17371009 + MER20 DNA MER1_type 1 219 0 2207 103 7 10 chrX 159603174 159603476 -17370664 + AluSx SINE Alu 1 301 -11 201 74 0 0 chrX 159603879 159603906 -17370234 + (T)n Simple_repeat Simple_repeat 1 27 0 240 111 0 0 chrX 159603906 159603942 -17370198 - AluSx SINE Alu -97 36 1 999 131 44 0 chrX 159604306 159604489 -17369651 - L1MA4 LINE L1 -2 6298 6108 1958 154 0 26 chrX 159604489 159604795 -17369345 + AluSx SINE Alu 1 298 -14 216 200 0 0 chrX 159604795 159604840 -17369300 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 279 28 0 0 chrX 159604846 159604882 -17369258 - L1MA4 LINE L1 -182 6118 6083 308 269 121 6 chrX 159604896 159605078 -17369062 - L1ME LINE L1 -526 5595 5393 4027 86 9 0 chrX 159605092 159605636 -17368504 - L1PA15 LINE L1 -1 6164 5616 1678 106 33 4 chrX 159605827 159606102 -17368038 - L1PA15 LINE L1 -573 5592 5310 181 344 100 69 chrX 159606262 159606417 -17367723 + L3 LINE CR1 113 262 -1315 2480 51 0 3 chrX 159606417 159606712 -17367428 - AluY SINE Alu -17 294 1 181 344 100 69 chrX 159606712 159606905 -17367235 + L3 LINE CR1 262 472 -1105 1084 253 177 25 chrX 159607002 159607617 -17366523 - L2 LINE L2 -9 3304 2602 365 284 205 5 chrX 159607743 159607933 -17366207 + L3 LINE CR1 1063 1290 -287 421 257 125 35 chrX 159607946 159608090 -17366050 + MIR SINE MIR 65 221 -41 246 363 113 12 chrX 159608098 159608266 -17365874 + L3 LINE CR1 1383 1567 -10 4442 84 0 5 chrX 159609706 159610300 -17363840 + LTR10C LTR ERV1 1 591 0 2211 260 60 20 chrX 159610532 159610645 -17363495 - L2 LINE L2 -503 2811 2704 2095 135 0 6 chrX 159610645 159610956 -17363184 + AluJb SINE Alu 1 309 -3 2211 260 60 20 chrX 159610956 159611426 -17362714 - L2 LINE L2 -610 2704 2205 7074 55 10 0 chrX 159611583 159611919 -17362221 + L1PA8 LINE L1 4811 5142 -1030 2435 84 0 10 chrX 159611919 159612228 -17361912 - AluSq SINE Alu -7 306 1 7074 55 10 0 chrX 159612228 159613259 -17360881 + L1PA8 LINE L1 5142 6172 0 2112 119 3 7 chrX 159613653 159613948 -17360192 - AluSx SINE Alu -18 294 1 204 40 0 0 chrX 159613971 159613996 -17360144 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1075 153 22 40 chrX 159614048 159614271 -17359869 + MER20 DNA MER1_type 1 219 0 733 161 0 27 chrX 159614608 159614757 -17359383 + L1PA16 LINE L1 6022 6166 0 21 0 0 0 chrX 159614991 159615012 -17359128 + AT_rich Low_complexity Low_complexity 1 21 0 2425 85 0 16 chrX 159615880 159616197 -17357943 + AluSx SINE Alu 1 312 0 1967 169 11 6 chrX 159616323 159616677 -17357463 - MLT1A1 LTR MaLR 0 365 10 316 340 55 46 chrX 159616697 159617026 -17357114 + L2 LINE L2 2872 3203 -110 1770 191 5 52 chrX 159617089 159617125 -17357015 + MLT1A1 LTR MaLR 1 37 -328 2078 141 0 6 chrX 159617125 159617437 -17356703 + AluSx SINE Alu 1 310 -2 1770 191 5 52 chrX 159617437 159617783 -17356357 + MLT1A1 LTR MaLR 37 365 0 2059 74 0 119 chrX 159618210 159618410 -17355730 - AluSg SINE Alu -4 296 150 2219 85 0 24 chrX 159618410 159618705 -17355435 - AluSc SINE Alu -21 288 1 2059 74 0 119 chrX 159618705 159618840 -17355300 - AluSg SINE Alu -150 150 1 2371 70 0 3 chrX 159618862 159619161 -17354979 - AluY SINE Alu -13 298 1 889 136 0 0 chrX 159619180 159619305 -17354835 - FLAM_C SINE Alu -8 125 1 798 198 13 17 chrX 159619906 159620138 -17354002 + MER33 DNA MER1_type 56 286 -38 817 153 0 0 chrX 159620149 159620280 -17353860 - FLAM_C SINE Alu -2 131 1 5671 98 29 30 chrX 159621691 159622009 -17352131 + MER4D LTR ERV1 1 318 -585 2256 114 0 3 chrX 159622009 159622307 -17351833 - AluSq SINE Alu -16 297 1 5671 98 29 30 chrX 159622307 159622699 -17351441 + MER4D LTR ERV1 318 712 -191 4797 115 39 31 chrX 159622699 159623195 -17350945 - MER4E LTR ERV1 0 779 273 2489 58 0 0 chrX 159623195 159623490 -17350650 - AluY SINE Alu -16 295 1 4797 115 39 31 chrX 159623490 159623766 -17350374 - MER4E LTR ERV1 -506 273 1 5671 98 29 30 chrX 159623766 159623958 -17350182 + MER4D LTR ERV1 712 903 0 772 220 22 0 chrX 159624917 159625099 -17349041 + MER20 DNA MER1_type 34 219 0 278 214 0 0 chrX 159625676 159625732 -17348408 - FAM SINE Alu 0 179 124 250 45 45 0 chrX 159626406 159626450 -17347690 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 323 130 0 0 chrX 159627027 159627081 -17347059 - AluSg/x SINE Alu -163 137 84 983 159 12 147 chrX 159627083 159627335 -17346805 - AluJo SINE Alu -94 218 1 3472 124 9 71 chrX 159627503 159628155 -17345985 + LTR9 LTR ERV1 1 612 0 417 219 22 87 chrX 159628296 159628479 -17345661 - L1MC5 LINE L1 -51 7910 7740 1006 164 53 40 chrX 159628524 159628693 -17345447 + LTR8A LTR ERV1 499 673 -54 3284 143 33 76 chrX 159628693 159629415 -17344725 + LTR8 LTR ERV1 1 691 0 1006 164 53 40 chrX 159629415 159629471 -17344669 + LTR8A LTR ERV1 673 727 0 2043 76 0 36 chrX 159629589 159629866 -17344274 + AluSc SINE Alu 1 267 -42 216 0 0 0 chrX 159629982 159630006 -17344134 + (A)n Simple_repeat Simple_repeat 1 24 0 763 156 19 99 chrX 159630891 159631102 -17343038 + L2 LINE L2 3112 3305 -8 2209 104 0 0 chrX 159631467 159631756 -17342384 + AluSx SINE Alu 3 291 -21 24 0 0 0 chrX 159632059 159632083 -17342057 + AT_rich Low_complexity Low_complexity 1 24 0 921 246 85 0 chrX 159634438 159634662 -17339478 - MIR SINE MIR 0 262 20 933 177 141 0 chrX 159635012 159635204 -17338936 + MER20 DNA MER1_type 1 219 0 2532 93 0 0 chrX 159635421 159635733 -17338407 + AluSx SINE Alu 1 312 0 202 264 305 11 chrX 159635804 159635978 -17338162 - MIR SINE MIR -4 258 34 427 382 77 0 chrX 159636114 159636360 -17337780 + L3b LINE CR1 1267 1531 -52 454 270 74 7 chrX 159636679 159636827 -17337313 - L2 LINE L2 -457 2857 2700 2340 105 0 6 chrX 159636960 159637275 -17336865 + AluSq SINE Alu 1 313 0 2077 140 68 51 chrX 159637626 159638041 -17336099 - MSTB LTR MaLR -4 422 1 228 318 35 0 chrX 159638160 159638245 -17335895 + MIR SINE MIR 80 167 -95 194 365 0 0 chrX 159639990 159640042 -17334098 - MIR SINE MIR -108 100 49 571 198 141 93 chrX 159640049 159640297 -17333843 - MER46C DNA MER2_type -74 264 5 238 347 44 48 chrX 159640603 159640851 -17333289 - L2 LINE L2 -1244 2070 1824 229 193 35 0 chrX 159641285 159641342 -17332798 - MER116 DNA Mariner -19 61 3 23 86 0 0 chrX 159642102 159642160 -17331980 + AT_rich Low_complexity Low_complexity 1 58 0 740 175 108 41 chrX 159643146 159643274 -17330866 - MER106A DNA MER1_type 0 236 89 2805 141 21 2 chrX 159643274 159643694 -17330446 + MSTA LTR MaLR 1 428 0 740 175 108 41 chrX 159643694 159643759 -17330381 - MER106A DNA MER1_type -147 89 30 201 233 0 0 chrX 159644163 159644206 -17329934 + L2 LINE L2 3151 3193 -79 3654 24 2 7 chrX 159644250 159644661 -17329479 + L1PA4 LINE L1 5747 6155 0 528 150 80 35 chrX 159644903 159645016 -17329124 + ORSL DNA AcHobo 1 118 -157 537 285 108 25 chrX 159645424 159645687 -17328453 + LTR16A LTR ERVL 32 307 -143 210 226 38 0 chrX 159647068 159647121 -17327019 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 355 0 0 0 chrX 159648061 159648102 -17326038 + L1PA6 LINE L1 6110 6150 -4 352 22 0 0 chrX 159648177 159648222 -17325918 - L1MA9 LINE L1 -6 6306 6262 951 236 131 47 chrX 159648252 159648679 -17325461 + L1MC4 LINE L1 7094 7556 -486 357 293 43 0 chrX 159648700 159648840 -17325300 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 266 153 17 0 chrX 159648874 159648933 -17325207 + (TGGA)n Simple_repeat Simple_repeat 4 63 0 492 18 0 0 chrX 159649032 159649089 -17325051 + (GGAA)n Simple_repeat Simple_repeat 2 58 0 2255 85 0 0 chrX 159650969 159651272 -17322868 + AluSx SINE Alu 2 304 0 2343 77 27 3 chrX 159651282 159651579 -17322561 + AluY SINE Alu 1 304 -7 368 286 71 18 chrX 159651745 159651857 -17322283 + MIR SINE MIR 2 119 -143 185 382 59 0 chrX 159651887 159651989 -17322151 - MIR SINE MIR -16 246 139 279 105 0 0 chrX 159651989 159652027 -17322113 - tRNA-Ser-TCA tRNA tRNA -47 38 1 216 322 61 19 chrX 159652032 159652166 -17321974 - MIR3 SINE MIR -67 141 8 180 373 20 29 chrX 159652517 159652619 -17321521 + L2 LINE L2 3193 3293 -20 280 295 32 21 chrX 159653001 159653096 -17321044 - MIR3 SINE MIR -104 104 9 416 88 44 0 chrX 159653114 159653182 -17320958 + (CACCAT)n Simple_repeat Simple_repeat 4 74 0 2649 17 0 7 chrX 159653329 159653652 -17320488 + L1PA2 LINE L1 5866 6155 0 297 251 40 49 chrX 159653770 159653939 -17320201 - MER63 DNA MER1_type -1 1061 673 289 115 180 16 chrX 159653960 159654021 -17320119 - MER63 DNA MER1_type -354 708 12 4414 117 69 2 chrX 159654079 159655133 -17319007 + L1MA8 LINE L1 4766 5914 -377 553 140 10 0 chrX 159655141 159655241 -17318899 + L1MA8 LINE L1 6179 6279 -12 521 320 117 5 chrX 159655420 159655626 -17318514 - MIR SINE MIR 0 262 34 400 205 36 0 chrX 159656377 159656460 -17317680 - MIR SINE MIR 0 262 177 265 281 0 0 chrX 159656661 159656718 -17317422 - MIR SINE MIR -205 57 1 496 259 108 38 chrX 159657544 159657702 -17316438 - MER5A DNA MER1_type -5 184 16 2401 179 22 43 chrX 159658728 159659219 -17314921 + MER66B LTR ERV1 1 481 -5 456 310 60 74 chrX 159659409 159659693 -17314447 - L2 LINE L2 -1 3271 2992 617 189 98 0 chrX 159660008 159660161 -17313979 - MER33 DNA MER1_type 0 324 157 189 0 0 0 chrX 159660173 159660194 -17313946 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 822 142 149 0 chrX 159660207 159660309 -17313831 - AluJo SINE Alu -74 238 110 333 0 0 0 chrX 159660309 159660346 -17313794 + (TG)n Simple_repeat Simple_repeat 2 38 0 822 142 149 0 chrX 159660346 159660377 -17313763 - AluJo SINE Alu -202 110 85 635 226 15 0 chrX 159660383 159660516 -17313624 - MER33 DNA MER1_type -188 136 2 478 276 30 8 chrX 159661324 159661458 -17312682 + MIR SINE MIR 20 156 -106 303 291 124 29 chrX 159661624 159661865 -17312275 - L1M2 LINE L1 -6245 604 341 2545 62 0 3 chrX 159663708 159664013 -17310127 - AluSq SINE Alu -9 304 1 981 201 39 0 chrX 159664319 159664523 -17309617 + MER20 DNA MER1_type 1 212 -7 669 182 133 27 chrX 159664523 159664835 -17309305 - L1MD3 LINE L1 -80 7915 7448 250 228 38 13 chrX 159664851 159664930 -17309210 - L1MD3 LINE L1 -2091 5717 5637 565 313 73 15 chrX 159665066 159665338 -17308802 - L1MD3 LINE L1 -2266 5542 5255 418 250 0 0 chrX 159665342 159665430 -17308710 + L2 LINE L2 3225 3312 -1 514 299 112 43 chrX 159665435 159666369 -17307771 - L1MD3 LINE L1 -913 5233 4235 474 265 64 80 chrX 159666514 159666888 -17307252 - L1MD3 LINE L1 -2157 3989 3622 5577 106 50 1 chrX 159668009 159668831 -17305309 + L1PA16 LINE L1 5304 6165 -1 217 287 43 21 chrX 159668879 159668973 -17305167 + GA-rich Low_complexity Low_complexity 1 96 0 2361 204 38 27 chrX 159669939 159670487 -17303653 + MER74A LTR ERVL 4 557 -1 453 217 19 89 chrX 159670548 159670705 -17303435 + MIR SINE MIR 24 169 -93 2218 102 0 13 chrX 159670837 159671141 -17302999 - AluSx SINE Alu -12 300 1 1748 148 46 24 chrX 159671213 159671552 -17302588 - Charlie5 DNA MER1_type -11 2613 2264 2253 114 7 0 chrX 159671552 159671860 -17302280 - AluSx SINE Alu -2 310 1 1748 148 46 24 chrX 159671860 159671892 -17302248 - Charlie5 DNA MER1_type -360 2264 2234 553 222 43 0 chrX 159671900 159672017 -17302123 - MER3 DNA MER1_type -87 122 48 2011 136 7 13 chrX 159672676 159672985 -17301155 + AluSx SINE Alu 1 307 -5 1529 188 38 7 chrX 159673070 159673358 -17300782 + AluJo SINE Alu 2 298 -14 2323 149 60 56 chrX 159673440 159673625 -17300515 + MSTB1 LTR MaLR 1 184 -248 1733 157 0 58 chrX 159673625 159673938 -17300202 - AluJo SINE Alu -17 295 1 2323 149 60 56 chrX 159673938 159674182 -17299958 + MSTB1 LTR MaLR 184 432 0 377 340 98 67 chrX 159674666 159674981 -17299159 + L2 LINE L2 2932 3256 -16 3039 142 57 29 chrX 159675374 159675702 -17298438 + L1MB3 LINE L1 5618 5935 -248 2282 110 0 0 chrX 159675702 159676001 -17298139 + AluSx SINE Alu 1 299 -13 180 0 0 0 chrX 159676001 159676021 -17298119 + (CAAG)n Simple_repeat Simple_repeat 2 21 0 3039 142 57 29 chrX 159676021 159676235 -17297905 + L1MB3 LINE L1 5934 6176 -7 1039 171 28 19 chrX 159677849 159678060 -17296080 + MER20 DNA MER1_type 1 213 -6 517 184 123 9 chrX 159678168 159678282 -17295858 - L1PA16 LINE L1 -9 6157 6031 1302 195 27 4 chrX 159680068 159680330 -17293810 + MER33 DNA MER1_type 57 324 0 603 46 46 0 chrX 159680831 159680918 -17293222 + L1PA13 LINE L1 6072 6162 -1 2031 102 3 14 chrX 159681362 159681657 -17292483 - AluSc SINE Alu -17 292 1 1727 92 39 4 chrX 159682109 159682338 -17291802 - AluSx SINE Alu -75 237 1 688 229 93 24 chrX 159683277 159683482 -17290658 + MER20 DNA MER1_type 1 219 0 237 285 191 27 chrX 159684434 159684810 -17289330 + L2 LINE L2 2849 3286 -27 692 168 58 7 chrX 159685953 159686090 -17288050 - MLT1C LTR MaLR -22 445 302 1710 129 19 4 chrX 159686096 159686352 -17287788 + MLT2D LTR ERVL 4 263 -151 1703 138 52 128 chrX 159686377 159686798 -17287342 + MSTD LTR MaLR 8 396 0 597 136 100 0 chrX 159686799 159686909 -17287231 + MLT2D LTR ERVL 254 374 -40 387 160 0 0 chrX 159686909 159686984 -17287156 + (CA)n Simple_repeat Simple_repeat 2 76 0 280 91 68 0 chrX 159686984 159687028 -17287112 + MLT2D LTR ERVL 366 412 -2 883 169 156 38 chrX 159687045 159687282 -17286858 - MLT1C LTR MaLR -202 265 1 198 0 0 0 chrX 159691090 159691112 -17283028 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chrX 159692067 159692088 -17282052 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chrX 159693346 159693386 -17280754 + (TG)n Simple_repeat Simple_repeat 1 40 0 206 278 97 0 chrX 159694072 159694144 -17279996 + L2 LINE L2 3171 3249 -64 531 0 0 0 chrX 159694294 159694353 -17279787 + (CA)n Simple_repeat Simple_repeat 1 59 0 758 170 7 14 chrX 159694455 159694596 -17279544 - MER20 DNA MER1_type -79 140 1 387 0 0 0 chrX 159694881 159694924 -17279216 + (TG)n Simple_repeat Simple_repeat 2 44 0 2086 140 0 10 chrX 159694924 159695238 -17278902 - AluJb SINE Alu 0 312 2 321 256 237 9 chrX 159696613 159696832 -17277308 + L1 LINE L1 3687 3955 -2191 822 139 0 28 chrX 159697383 159697527 -17276613 + FRAM SINE Alu 34 173 -3 383 256 51 88 chrX 159697531 159697746 -17276394 + L1ME4a LINE L1 5871 6077 -44 2200 81 0 3 chrX 159697960 159698277 -17275863 - AluSg SINE Alu 0 316 1 1786 92 8 8 chrX 159698982 159699242 -17274898 - L1PA15 LINE L1 -7 6158 5899 744 186 133 21 chrX 159699499 159699687 -17274453 - MER3 DNA MER1_type 0 209 1 1019 109 0 0 chrX 159699767 159699914 -17274226 - L1PA15 LINE L1 -34 6131 5985 916 256 4 53 chrX 159701657 159701923 -17272217 - MIR SINE MIR -1 261 9 650 313 102 68 chrX 159701953 159703359 -17270781 - L2 LINE L2 -43 3229 1016 369 248 62 0 chrX 159703483 159703596 -17270544 - L1ME LINE L1 -452 5710 5591 1822 140 21 11 chrX 159704388 159704706 -17269434 - AluJb SINE Alu 0 321 1 375 213 0 0 chrX 159704821 159704896 -17269244 + FLAM SINE Alu 43 117 -16 244 304 115 58 chrX 159705086 159705277 -17268863 + L2 LINE L2 2748 2949 -365 1838 124 73 88 chrX 159705306 159705702 -17268438 - MLT1B LTR MaLR 0 390 1 294 29 0 0 chrX 159706006 159706041 -17268099 + (TG)n Simple_repeat Simple_repeat 1 35 0 8605 81 3 0 chrX 159756174 159757255 -17216885 + THE1B-int LTR MaLR 497 1580 0 2372 122 48 20 chrX 159757255 159757607 -17216533 + THE1B LTR MaLR 1 362 -2 1637 90 0 14 chrX 159757608 159757830 -17216310 - THE1C LTR MaLR -156 219 1 11609 102 11 32 chrX 159757830 159759444 -17214696 - THE1C-int LTR MaLR 0 1580 1 444 40 0 0 chrX 159759444 159759494 -17214646 - THE1C LTR MaLR 0 364 315 1558 136 8 8 chrX 159759494 159759736 -17214404 - THE1C LTR MaLR -8 367 126 233 260 0 20 chrX 159759852 159759902 -17214238 + L2 LINE L2 3209 3257 -15 1706 132 19 68 chrX 159760047 159760212 -17213928 - AluJb SINE Alu -17 295 150 2408 88 0 16 chrX 159760212 159760529 -17213611 - AluSx SINE Alu 0 312 1 1706 132 19 68 chrX 159760529 159760673 -17213467 - AluJb SINE Alu -162 150 1 2122 127 3 7 chrX 159760706 159761013 -17213127 + AluSx SINE Alu 1 306 -6 2306 96 3 0 chrX 159762113 159762405 -17211735 - AluSx SINE Alu -19 293 1 724 133 150 3 chrX 159762674 159762834 -17211306 - MER46A DNA MER2_type 0 236 1 9952 118 26 27 chrX 159762853 159764408 -17209732 - Tigger2 DNA MER2_type 0 2718 1166 1053 105 0 0 chrX 159764408 159764551 -17209589 + AluSg SINE Alu 1 143 -167 239 91 0 0 chrX 159764551 159764584 -17209556 - Tigger2 DNA MER2_type -1545 1173 1141 1356 91 0 0 chrX 159764584 159764760 -17209380 - AluSg/x SINE Alu 0 312 137 2366 110 34 133 chrX 159764762 159765227 -17208913 - Tigger2 DNA MER2_type -2049 669 251 2413 93 0 3 chrX 159765352 159765662 -17208478 - AluSx SINE Alu -3 309 1 2481 60 3 0 chrX 159765776 159766077 -17208063 - AluSq SINE Alu -11 302 1 1292 167 36 8 chrX 159766082 159766333 -17207807 - Tigger2 DNA MER2_type -2460 258 1 195 216 189 0 chrX 159766545 159766619 -17207521 - MIR SINE MIR -29 233 146 729 254 46 40 chrX 159766919 159767246 -17206894 - L1MC4 LINE L1 0 8042 7714 887 267 77 37 chrX 159767253 159767473 -17206667 - L1MC4 LINE L1 -472 7570 7360 2487 64 0 3 chrX 159767473 159767770 -17206370 + AluSc SINE Alu 1 296 -13 887 267 77 37 chrX 159767770 159768006 -17206134 - L1MC4 LINE L1 -682 7360 7096 1338 99 0 0 chrX 159768021 159768192 -17205948 - AluSq SINE Alu -12 301 131 2412 93 0 6 chrX 159768743 159769054 -17205086 - AluSc SINE Alu 0 309 1 372 306 118 73 chrX 159769218 159769741 -17204399 - L1MC4 LINE L1 -342 5779 5360 2245 101 0 25 chrX 159769781 159770098 -17204042 - AluSc SINE Alu 0 309 1 489 268 30 42 chrX 159770099 159770267 -17203873 + MIR SINE MIR 97 262 0 23 0 0 0 chrX 159770492 159770515 -17203625 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chrX 159770724 159770745 -17203395 + AT_rich Low_complexity Low_complexity 1 21 0 2352 89 7 0 chrX 159771021 159771325 -17202815 - AluSx SINE Alu -6 306 1 2351 97 3 0 chrX 159771548 159771856 -17202284 + AluSq SINE Alu 1 309 -4 673 92 0 0 chrX 159772442 159772529 -17201611 + AluSp/q SINE Alu 215 301 -12 229 254 20 26 chrX 159772674 159772765 -17201375 + GA-rich Low_complexity Low_complexity 1 90 0 954 186 51 0 chrX 159773000 159773177 -17200963 - MER58A DNA MER1_type -2 222 37 22 0 0 0 chrX 159773439 159773461 -17200679 + AT_rich Low_complexity Low_complexity 1 22 0 409 272 51 93 chrX 159774056 159774217 -17199923 - L2 LINE L2 -31 3282 3116 2276 101 3 3 chrX 159774217 159774524 -17199616 + AluSg SINE Alu 1 307 -3 409 272 51 93 chrX 159774524 159774991 -17199149 - L2 LINE L2 -197 3116 2689 1997 109 33 0 chrX 159775005 159775280 -17198860 - AluSx SINE Alu -23 289 6 1076 93 0 7 chrX 159775307 159775447 -17198693 - AluSq SINE Alu -85 228 90 208 290 58 58 chrX 159775455 159775593 -17198547 - L2 LINE L2 -833 2481 2344 2350 99 0 6 chrX 159775843 159776157 -17197983 - AluSx SINE Alu 0 312 1 2263 110 0 0 chrX 159776325 159776624 -17197516 + AluJb SINE Alu 1 299 -13 2493 90 3 0 chrX 159777176 159777488 -17196652 - AluSp SINE Alu 0 313 1 722 110 0 0 chrX 159778300 159778400 -17195740 + FRAM SINE Alu 70 169 -7 411 293 105 0 chrX 159778486 159778667 -17195473 + MIR SINE MIR 24 223 -39 206 250 62 0 chrX 159778801 159778849 -17195291 - L2 LINE L2 -1 3312 3262 415 222 100 0 chrX 159779210 159779300 -17194840 + MER5B DNA MER1_type 1 99 -79 957 112 0 0 chrX 159779302 159779427 -17194713 + AluJb SINE Alu 1 125 -187 225 146 36 0 chrX 159779438 159779493 -17194647 + (TA)n Simple_repeat Simple_repeat 1 57 0 213 314 14 0 chrX 159779505 159779575 -17194565 - MER5B DNA MER1_type -106 72 2 2226 96 0 10 chrX 159780001 159780293 -17193847 - AluSc SINE Alu -20 289 1 2362 57 0 0 chrX 159780476 159780796 -17193344 - AluY SINE Alu 0 320 1 200 200 0 0 chrX 159781298 159781338 -17192802 + GA-rich Low_complexity Low_complexity 2 41 0 297 310 94 29 chrX 159781848 159782019 -17192121 - MER5A DNA MER1_type 0 189 8 1731 159 14 17 chrX 159782917 159783206 -17190934 + AluJo SINE Alu 4 291 -21 248 291 48 39 chrX 159783262 159783365 -17190775 + MIR SINE MIR 59 162 -100 2301 89 0 32 chrX 159783859 159784174 -17189966 - AluSq SINE Alu -8 305 1 281 306 42 88 chrX 159784688 159784995 -17189145 - L3 LINE CR1 -23 1554 1262 23 33 0 0 chrX 159785415 159785445 -17188695 + AT_rich Low_complexity Low_complexity 1 30 0 180 333 69 0 chrX 159785579 159785651 -17188489 + MIR3 SINE MIR 81 157 -51 258 301 173 23 chrX 159786071 159786433 -17187707 + L1ME LINE L1 5374 5794 -372 477 268 0 24 chrX 159786552 159786720 -17187420 + (TATATG)n Simple_repeat Simple_repeat 1 164 0 2374 102 0 3 chrX 159787326 159787639 -17186501 - AluSq SINE Alu -1 312 1 48 43 0 0 chrX 159787647 159787716 -17186424 + AT_rich Low_complexity Low_complexity 1 69 0 1488 122 0 5 chrX 159787757 159787962 -17186178 + AluSq SINE Alu 1 204 -109 1155 165 0 34 chrX 159787964 159788170 -17185970 + AluJo SINE Alu 104 302 -10 21 0 0 0 chrX 159788237 159788258 -17185882 + AT_rich Low_complexity Low_complexity 1 21 0 318 267 81 12 chrX 159789071 159789157 -17184983 - MIR SINE MIR -94 114 23 1797 159 66 15 chrX 159789920 159790377 -17183763 - L1M LINE L1 -749 5397 4936 2205 112 3 0 chrX 159790561 159790857 -17183283 - AluSx SINE Alu -15 297 1 1635 165 63 14 chrX 159792077 159792362 -17181778 - AluJo SINE Alu -13 299 1 235 228 234 66 chrX 159792452 159792619 -17181521 - L1ME LINE L1 -284 5837 5643 907 164 27 0 chrX 159792800 159792946 -17181194 - FAM SINE Alu -20 165 16 24 32 0 0 chrX 159793921 159793952 -17180188 + AT_rich Low_complexity Low_complexity 1 31 0 185 333 0 0 chrX 159796135 159796183 -17177957 - L2 LINE L2 -16 3256 3209 21 0 0 0 chrX 159796587 159796608 -17177532 + AT_rich Low_complexity Low_complexity 1 21 0 408 225 218 7 chrX 159796858 159797000 -17177140 + MIR SINE MIR 83 254 -8 659 284 130 16 chrX 159797177 159797748 -17176392 + L1MC5 LINE L1 7276 7911 -50 21 0 0 0 chrX 159797886 159797907 -17176233 + AT_rich Low_complexity Low_complexity 1 21 0 1516 110 0 20 chrX 159798303 159798549 -17175591 + L1MB2 LINE L1 5931 6171 0 369 0 0 0 chrX 159803007 159803048 -17171092 + (TA)n Simple_repeat Simple_repeat 2 42 0 2135 103 3 36 chrX 159803049 159803351 -17170789 - AluSg SINE Alu -18 292 1 204 286 152 19 chrX 159804248 159804353 -17169787 - L3 LINE CR1 -196 1381 1263 314 123 0 0 chrX 159804466 159804523 -17169617 + AluJb SINE Alu 87 134 -168 413 286 156 21 chrX 159804550 159804833 -17169307 - L1MC4a LINE L1 -1925 5883 5563 2021 142 0 13 chrX 159805166 159805477 -17168663 + AluJo SINE Alu 1 307 -5 702 191 0 0 chrX 159805519 159805629 -17168511 - FLAM_A SINE Alu -32 110 1 2454 74 0 0 chrX 159806173 159806472 -17167668 - AluSc SINE Alu -10 299 1 1011 185 9 44 chrX 159806650 159806877 -17167263 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chrX 159807050 159807073 -17167067 + AT_rich Low_complexity Low_complexity 1 23 0 282 128 192 0 chrX 159807113 159807191 -17166949 - MER112 DNA MER1_type -21 239 147 2170 128 0 0 chrX 159807311 159807615 -17166525 - AluSx SINE Alu -8 304 1 222 118 0 0 chrX 159808029 159808063 -17166077 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 1596 186 0 35 chrX 159808065 159808355 -17165785 - AluJb SINE Alu -32 280 1 450 301 88 29 chrX 159810448 159810687 -17163453 + MIR SINE MIR 9 261 -1 2264 112 13 0 chrX 159811314 159811619 -17162521 + AluSx SINE Alu 1 309 -3 202 225 0 0 chrX 159811672 159811712 -17162428 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 2260 107 3 0 chrX 159811841 159812141 -17161999 + AluSq SINE Alu 1 301 -12 210 143 0 0 chrX 159814087 159814122 -17160018 + (A)n Simple_repeat Simple_repeat 1 35 0 587 201 65 47 chrX 159815012 159815226 -17158914 - L1ME3A LINE L1 -9 6161 5944 201 390 124 6 chrX 159815829 159815998 -17158142 - MIR SINE MIR -70 192 4 333 273 116 58 chrX 159816802 159816974 -17157166 - MIR SINE MIR -1 261 80 22 35 0 0 chrX 159817535 159817564 -17156576 + AT_rich Low_complexity Low_complexity 1 29 0 344 269 269 13 chrX 159817608 159817757 -17156383 - MIR3 SINE MIR 0 208 22 449 323 51 37 chrX 159818387 159818681 -17155459 + L2 LINE L2 1715 2012 -1302 1436 145 0 40 chrX 159818942 159819190 -17154950 - AluJo SINE Alu -35 277 40 265 277 15 0 chrX 159819429 159819494 -17154646 + MIR SINE MIR 45 110 -98 216 0 0 0 chrX 159819683 159819707 -17154433 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 207 273 16 31 chrX 159823064 159823192 -17150948 + (CGGGG)n Simple_repeat Simple_repeat 4 129 0 335 277 138 88 chrX 159823234 159823290 -17150850 - L1M2 LINE L1 -5515 1334 1282 180 0 0 0 chrX 159823290 159823310 -17150830 + (CGG)n Simple_repeat Simple_repeat 1 20 0 335 277 138 88 chrX 159823310 159823766 -17150374 - L1M2 LINE L1 -5567 1282 796 372 221 149 14 chrX 159826210 159826418 -17147722 + HAL1 LINE L1 2127 2362 -145 22 0 0 0 chrX 159826497 159826519 -17147621 + AT_rich Low_complexity Low_complexity 1 22 0 1106 170 14 31 chrX 159826926 159827149 -17146991 + MER20 DNA MER1_type 1 219 0 434 101 14 0 chrX 159827235 159827304 -17146836 + (TC)n Simple_repeat Simple_repeat 1 70 0 203 373 0 49 chrX 159827496 159827598 -17146542 - L2 LINE L2 0 3272 3176 1034 133 7 0 chrX 159827975 159828126 -17146014 - MER5A DNA MER1_type -37 152 1 7550 32 0 0 chrX 159828370 159829605 -17144535 - L1PA5 LINE L1 -3 6151 4916 785 234 138 65 chrX 159829840 159830237 -17143903 + MLT1J1 LTR MaLR 6 431 -15 407 272 75 49 chrX 159830843 159831008 -17143132 - MIR3 SINE MIR -34 174 1 1970 120 0 31 chrX 159831301 159831593 -17142547 + AluSq SINE Alu 1 283 -30 358 304 93 99 chrX 159831936 159832518 -17141622 - L2 LINE L2 -54 3218 2661 578 302 138 90 chrX 159833079 159833584 -17140556 - L2 LINE L2 -647 2667 2188 1986 201 105 44 chrX 159833584 159834172 -17139968 + MLT1E3 LTR MaLR 1 624 0 578 302 138 90 chrX 159834172 159834477 -17139663 - L2 LINE L2 -1126 2188 1899 1971 108 35 0 chrX 159834477 159834763 -17139377 - AluSx SINE Alu -14 298 3 578 302 138 90 chrX 159834763 159835219 -17138921 - L2 LINE L2 -1415 1899 1467 1406 164 124 18 chrX 159835219 159835494 -17138646 + AluJo SINE Alu 1 304 -8 578 302 138 90 chrX 159835494 159836187 -17137953 - L2 LINE L2 -1847 1467 611 1792 165 25 19 chrX 159836221 159836585 -17137555 - L1MB7 LINE L1 0 6184 5819 1584 196 8 45 chrX 159837356 159837733 -17136407 - MLT1A1 LTR MaLR -2 363 1 1532 314 78 82 chrX 159838087 159838234 -17135906 + L3 LINE CR1 40 186 -1391 1834 151 6 22 chrX 159838234 159838545 -17135595 + AluJb SINE Alu 1 306 -6 1532 314 78 82 chrX 159838545 159839413 -17134727 + L3 LINE CR1 186 1051 -526 1797 145 71 0 chrX 159839413 159839696 -17134444 + AluJb SINE Alu 1 303 -9 1532 314 78 82 chrX 159839696 159840122 -17134018 + L3 LINE CR1 1051 1477 -100 351 113 0 0 chrX 159840187 159840240 -17133900 + (TG)n Simple_repeat Simple_repeat 1 53 0 1913 139 51 0 chrX 159840423 159840718 -17133422 - AluJb SINE Alu -2 310 1 375 344 122 5 chrX 159841065 159841254 -17132886 + MIR SINE MIR 37 247 -15 1309 106 6 0 chrX 159841336 159841506 -17132634 - AluSg/x SINE Alu -17 295 125 24 0 0 0 chrX 159841530 159841554 -17132586 + AT_rich Low_complexity Low_complexity 1 24 0 2029 127 3 13 chrX 159841560 159841860 -17132280 + AluSx SINE Alu 1 297 -15 1871 170 3 0 chrX 159842608 159842902 -17131238 - AluJb SINE Alu -17 295 1 286 345 43 0 chrX 159843210 159843349 -17130791 + L2 LINE L2 3169 3313 0 185 258 47 11 chrX 159843376 159843500 -17130640 - L2 LINE L2 -1 3271 3104 902 248 100 22 chrX 159843515 159843834 -17130306 - L2 LINE L2 -141 3172 2829 600 167 0 0 chrX 159843855 159843957 -17130183 + FLAM_A SINE Alu 40 141 -1 418 338 98 44 chrX 159844090 159844457 -17129683 + L3 LINE CR1 141 527 -1050 4557 159 7 48 chrX 159844478 159845681 -17128459 - L1MB5 LINE L1 0 6174 5021 1626 175 7 43 chrX 159846280 159846583 -17127557 - AluJo SINE Alu -20 292 1 404 258 57 8 chrX 159846583 159846707 -17127433 - MLT1D LTR MaLR -310 195 66 2825 86 0 29 chrX 159846707 159846869 -17127271 - THE1C LTR MaLR 0 375 210 2374 125 36 31 chrX 159846869 159847229 -17126911 + THE1B LTR MaLR 1 362 -2 2825 86 0 29 chrX 159847229 159847452 -17126688 - THE1C LTR MaLR -165 210 1 11609 102 11 32 chrX 159847452 159849066 -17125074 - THE1C-int LTR MaLR 0 1580 1 444 40 0 0 chrX 159849066 159849116 -17125024 - THE1C LTR MaLR 0 364 315 2494 119 5 14 chrX 159849116 159849486 -17124654 - THE1C LTR MaLR -8 367 1 427 118 0 79 chrX 159849486 159849562 -17124578 - MLT1D LTR MaLR -435 70 1 327 293 89 0 chrX 159850394 159850517 -17123623 + L3 LINE CR1 674 807 -770 3675 130 5 33 chrX 159851049 159851268 -17122872 - MER41B LTR ERV1 -54 581 357 2832 101 106 5 chrX 159851268 159851675 -17122465 + MER83 LTR ERV1 1 448 0 3675 130 5 33 chrX 159851675 159852053 -17122087 - MER41B LTR ERV1 -278 357 1 1490 188 115 63 chrX 159852125 159852567 -17121573 + LTR29 LTR ERV1 158 622 0 724 154 0 17 chrX 159853653 159853770 -17120370 - FLAM_A SINE Alu -5 137 23 23 54 0 0 chrX 159853939 159853976 -17120164 + AT_rich Low_complexity Low_complexity 1 37 0 849 138 0 0 chrX 159854327 159854450 -17119690 - FAM SINE Alu -1 48 1 267 188 0 59 chrX 159854830 159854931 -17119209 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 38 51 0 0 chrX 159854986 159855045 -17119095 + AT_rich Low_complexity Low_complexity 1 59 0 2288 96 0 19 chrX 159855047 159855387 -17118753 - AluSx SINE Alu 0 312 1 22 0 0 0 chrX 159856063 159856085 -17118055 + AT_rich Low_complexity Low_complexity 1 22 0 758 273 110 35 chrX 159856507 159856881 -17117259 - LTR16C LTR ERVL 0 491 90 462 282 58 51 chrX 159857278 159857434 -17116706 + MER5B DNA MER1_type 6 162 -16 413 257 96 15 chrX 159857550 159857686 -17116454 + MIR SINE MIR 110 256 -6 188 406 89 6 chrX 159858051 159858231 -17115909 + L2 LINE L2 3005 3199 -73 4350 162 26 24 chrX 159858452 159859250 -17114890 + L1MA9 LINE L1 5456 6255 -57 1719 108 12 0 chrX 159859250 159859500 -17114640 + L1MA4 LINE L1 6044 6296 -4 21 0 0 0 chrX 159859535 159859556 -17114584 + AT_rich Low_complexity Low_complexity 1 21 0 759 161 0 94 chrX 159860301 159860379 -17113761 + FRAM SINE Alu 20 104 -208 3065 90 28 14 chrX 159860379 159860801 -17113339 - MSTA LTR MaLR 0 428 1 759 161 0 94 chrX 159860801 159860851 -17113289 + FRAM SINE Alu 104 135 -177 2749 127 46 5 chrX 159860851 159861262 -17112878 - MSTA LTR MaLR 0 428 1 759 161 0 94 chrX 159861262 159861281 -17112859 + FRAM SINE Alu 135 154 -22 1952 163 0 3 chrX 159861994 159862402 -17111738 + AluJb SINE Alu 1 407 0 1403 160 16 57 chrX 159862404 159862619 -17111521 + L1MB8 LINE L1 5874 6073 -105 1707 180 33 44 chrX 159862619 159862985 -17111155 - MLT1A1 LTR MaLR -3 362 1 1403 160 16 57 chrX 159862985 159863087 -17111053 + L1MB8 LINE L1 6073 6178 0 444 254 36 0 chrX 159863220 159863330 -17110810 + MER5A DNA MER1_type 1 114 -75 22 70 0 0 chrX 159864765 159864808 -17109332 + AT_rich Low_complexity Low_complexity 1 43 0 3715 36 0 0 chrX 159864808 159865222 -17108918 - L1PA5 LINE L1 -3 6151 5738 373 239 0 11 chrX 159865225 159865313 -17108827 - L1MC4 LINE L1 -1021 7021 6935 901 78 94 8 chrX 159865318 159865446 -17108694 + MER85 DNA T2_type 1 139 0 1760 135 83 0 chrX 159865463 159865729 -17108411 + AluJo SINE Alu 1 288 -24 3526 148 15 26 chrX 159865729 159865838 -17108302 - L1MB2 LINE L1 -9 6162 6053 2320 112 0 0 chrX 159865838 159866143 -17107997 - AluSc SINE Alu -4 305 1 3526 148 15 26 chrX 159866143 159866650 -17107490 - L1MB2 LINE L1 -118 6053 5553 269 143 0 71 chrX 159866650 159866720 -17107420 + L1MD3 LINE L1 7926 7990 -5 843 134 14 157 chrX 159866720 159866936 -17107204 + AluJo SINE Alu 120 304 -8 2601 100 5 40 chrX 159866937 159867366 -17106774 - L1MA8 LINE L1 -182 6109 5696 871 306 66 14 chrX 159867387 159867825 -17106315 + L1ME3A LINE L1 5486 5946 -224 1887 146 0 11 chrX 159867861 159868173 -17105967 - AluJb SINE Alu 0 309 1 887 160 0 8 chrX 159868232 159868363 -17105777 + FLAM_C SINE Alu 1 130 -3 2471 113 48 20 chrX 159868536 159868890 -17105250 - THE1B LTR MaLR 0 364 1 13101 76 3 6 chrX 159868890 159870474 -17103666 - THE1B-int LTR MaLR 0 1580 1 2594 93 48 20 chrX 159870474 159870828 -17103312 - THE1B LTR MaLR 0 364 1 1991 161 0 0 chrX 159870884 159871188 -17102952 - AluJo SINE Alu -8 304 1 2168 112 0 7 chrX 159871190 159871517 -17102623 - AluSx SINE Alu 0 312 1 302 281 10 31 chrX 159871830 159871926 -17102214 - MIR3 SINE MIR -7 201 108 368 260 73 19 chrX 159872463 159872605 -17101535 - MIR SINE MIR -55 153 11 1928 151 7 13 chrX 159872760 159873065 -17101075 - AluJo SINE Alu -9 303 1 676 83 0 10 chrX 159873065 159873161 -17100979 - MER53 DNA DNA -94 95 1 1109 175 26 14 chrX 159873277 159873496 -17100644 + MER20 DNA MER1_type 8 219 0 31 58 0 0 chrX 159873614 159873666 -17100474 + AT_rich Low_complexity Low_complexity 1 52 0 272 169 231 0 chrX 159873950 159874015 -17100125 - MER116 DNA Mariner 0 80 1 658 132 0 0 chrX 159875779 159875870 -17098270 + FRAM SINE Alu 31 121 -55 26 30 0 0 chrX 159875894 159875927 -17098213 + AT_rich Low_complexity Low_complexity 1 33 0 1415 192 14 68 chrX 159875933 159876303 -17097837 - MLT1A2 LTR MaLR -24 350 1 878 256 89 15 chrX 159876362 159876632 -17097508 + L1ME3A LINE L1 5879 6168 -2 1937 140 3 3 chrX 159876637 159876922 -17097218 + AluJb SINE Alu 1 285 -27 22 0 0 0 chrX 159876926 159876948 -17097192 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chrX 159878063 159878085 -17096055 + (TG)n Simple_repeat Simple_repeat 2 23 0 2306 152 102 76 chrX 159878142 159878708 -17095432 + LTR49 LTR ERV1 1 581 -14 424 264 167 7 chrX 159878807 159878951 -17095189 + MER5A DNA MER1_type 10 176 -13 2548 58 0 7 chrX 159879217 159879525 -17094615 + AluY SINE Alu 1 306 -5 1761 143 0 43 chrX 159879739 159880039 -17094101 - AluJo SINE Alu -25 287 1 186 270 110 100 chrX 159880043 159880143 -17093997 + MER5A DNA MER1_type 55 155 -34 301 319 0 11 chrX 159880274 159880368 -17093772 - MIR SINE MIR -149 113 21 367 161 16 65 chrX 159881180 159881304 -17092836 + Charlie7 DNA MER1_type 2453 2570 -42 214 284 49 0 chrX 159881341 159881422 -17092718 - L3 LINE CR1 -838 739 655 207 259 0 0 chrX 159881516 159881601 -17092539 + (ATG)n Simple_repeat Simple_repeat 1 85 0 435 95 0 0 chrX 159882133 159882207 -17091933 + (CAAAC)n Simple_repeat Simple_repeat 2 75 0 251 235 106 12 chrX 159882300 159882385 -17091755 - L1ME4a LINE L1 -194 5927 5835 1071 139 0 37 chrX 159882399 159882636 -17091504 - AluJb SINE Alu -15 297 2 348 182 84 94 chrX 159882732 159882870 -17091270 - L1ME4a LINE L1 -324 5797 5664 757 265 138 2 chrX 159882870 159883267 -17090873 + LTR33 LTR ERVL 1 519 -2 2049 141 0 0 chrX 159883704 159884001 -17090139 - AluJo SINE Alu -15 297 1 312 218 0 0 chrX 159884501 159884556 -17089584 + LTR33 LTR ERVL 376 430 -91 338 21 0 42 chrX 159884707 159884755 -17089385 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 622 191 0 9 chrX 159884756 159884871 -17089269 - U5 snRNA snRNA -2 114 1 212 164 21 50 chrX 159885035 159885185 -17088955 + CT-rich Low_complexity Low_complexity 1 145 0 52 50 0 0 chrX 159885822 159885902 -17088238 + AT_rich Low_complexity Low_complexity 1 80 0 3083 167 47 88 chrX 159886415 159887139 -17087001 - LTR8A LTR ERV1 0 727 34 380 246 53 106 chrX 159887956 159888096 -17086044 - L1ME3A LINE L1 -219 5951 5829 2217 68 32 4 chrX 159888096 159888397 -17085743 + AluSq SINE Alu 1 309 0 380 246 53 106 chrX 159888397 159888519 -17085621 - L1ME3A LINE L1 -341 5829 5702 1167 173 0 0 chrX 159888548 159888721 -17085419 + FAM SINE Alu 1 173 -2 294 289 68 38 chrX 159889028 159889197 -17084943 + MIR SINE MIR 3 174 -62 2417 84 3 0 chrX 159889485 159889795 -17084345 - AluY SINE Alu 0 311 1 234 91 0 0 chrX 159889804 159889837 -17084303 + (T)n Simple_repeat Simple_repeat 1 33 0 2163 103 14 0 chrX 159889925 159890217 -17083923 + AluSx SINE Alu 1 296 -16 1583 208 142 52 chrX 159890320 159890834 -17083306 + MER34B LTR ERV1 1 560 -5 2284 89 3 3 chrX 159890863 159891166 -17082974 + AluY SINE Alu 1 303 -8 528 225 18 0 chrX 159891431 159891542 -17082598 + L2 LINE L2 3201 3313 0 6083 152 21 8 chrX 159891716 159891826 -17082314 - L1MA9 LINE L1 -35 6277 6170 351 0 0 0 chrX 159891826 159891865 -17082275 + (TG)n Simple_repeat Simple_repeat 1 39 0 6083 152 21 8 chrX 159891865 159893221 -17080919 - L1MA9 LINE L1 -142 6170 4794 234 68 182 0 chrX 159893232 159893276 -17080864 - L1 LINE L1 -2623 3523 3472 8290 103 12 23 chrX 159893280 159894480 -17079660 + Tigger1 DNA MER2_type 1233 2418 0 31 0 0 0 chrX 159894519 159894550 -17079590 + AT_rich Low_complexity Low_complexity 1 31 0 2473 77 0 10 chrX 159894598 159894910 -17079230 - AluY SINE Alu 0 311 3 2146 225 46 0 chrX 159894921 159895419 -17078721 - L1 LINE L1 -3089 3057 2537 641 209 51 45 chrX 159895874 159896051 -17078089 - L2 LINE L2 0 3313 3136 757 157 0 95 chrX 159896057 159896204 -17077936 + FLAM_A SINE Alu 1 133 0 2590 237 115 13 chrX 159896280 159897178 -17076962 - L2 LINE L2 -549 2765 1777 26 30 0 0 chrX 159897219 159897252 -17076888 + AT_rich Low_complexity Low_complexity 1 33 0 899 201 0 0 chrX 159897357 159897521 -17076619 - AluJb SINE Alu -26 286 123 457 245 48 56 chrX 159897521 159897770 -17076370 + L1ME4a LINE L1 5653 5899 -222 398 243 105 32 chrX 159898197 159898345 -17075795 + MIR SINE MIR 11 149 -63 1182 193 175 6 chrX 159898347 159898679 -17075461 - MLT1G1 LTR MaLR 0 595 208 528 175 183 0 chrX 159898679 159898805 -17075335 - MER5B DNA MER1_type -29 149 1 1749 155 11 0 chrX 159900166 159900430 -17073710 - AluJb SINE Alu -45 267 1 665 242 32 5 chrX 159900681 159900871 -17073269 - LTR33 LTR ERVL 0 521 327 322 286 102 14 chrX 159900979 159901126 -17073014 - LTR33 LTR ERVL -359 162 3 585 289 71 10 chrX 159901314 159901511 -17072629 + MIR SINE MIR 52 260 -2 557 289 123 35 chrX 159901529 159901813 -17072327 - HAL1 LINE L1 -1700 807 499 507 213 51 119 chrX 159901836 159902089 -17072051 - HAL1 LINE L1 -2192 315 80 211 176 0 0 chrX 159905777 159905811 -17068329 + polypurine Low_complexity Low_complexity 2 35 0 734 284 11 53 chrX 159906238 159906523 -17067617 + MLT1J LTR MaLR 233 505 -6 1036 279 46 29 chrX 159906717 159907173 -17066967 + LTR16B LTR ERVL 1 464 0 2234 40 22 4 chrX 159907199 159907507 -17066633 - AluY SINE Alu 0 313 1 3476 58 5 7 chrX 159907951 159908398 -17065742 - L1PA7 LINE L1 -1 6153 5708 735 183 112 12 chrX 159908399 159908568 -17065572 - MLT1J2 LTR MaLR -264 186 1 196 158 0 26 chrX 159909539 159909577 -17064563 - L3 LINE CR1 -21 1556 1520 * 349 287 148 0 chrX 159909545 159909660 -17064480 - MIR3 SINE MIR -30 178 47 315 146 0 0 chrX 159909661 159909716 -17064424 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 436 330 127 65 chrX 159909721 159910139 -17064001 - L2 LINE L2 -11 3261 2818 227 210 65 0 chrX 159910170 159910232 -17063908 + MLT1L LTR MaLR 335 400 -215 219 36 0 0 chrX 159911629 159911657 -17062483 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2092 102 0 0 chrX 159911663 159911937 -17062203 - AluSg SINE Alu -36 274 1 2121 171 30 0 chrX 159911972 159912369 -17061771 - LTR53 LTR ERVL -3 516 108 814 263 199 8 chrX 159912655 159913036 -17061104 - LTR16A1 LTR ERVL -2 455 2 353 229 12 12 chrX 159913047 159913130 -17061010 - MIR SINE MIR -70 192 110 1750 208 72 11 chrX 159914127 159914560 -17059580 - MLT1C LTR MaLR -3 464 6 505 169 165 115 chrX 159914827 159915070 -17059070 + MER112 DNA MER1_type 1 255 -1 254 0 100 67 chrX 159915531 159915591 -17058549 + GA-rich Low_complexity Low_complexity 1 62 0 1071 266 63 18 chrX 159915723 159916122 -17058018 + LTR16A1 LTR ERVL 1 417 -40 202 197 42 28 chrX 159916156 159916227 -17057913 + T-rich Low_complexity Low_complexity 2 73 0 2509 151 50 52 chrX 159916576 159917080 -17057060 - MLT1D LTR MaLR -2 503 1 756 149 0 0 chrX 159917114 159917228 -17056912 + FLAM_C SINE Alu 1 114 -29 265 206 29 39 chrX 159919282 159919384 -17054756 - L1MC5 LINE L1 -44 7917 7817 499 167 11 11 chrX 159919849 159919939 -17054201 - AluJo SINE Alu -176 136 47 1853 191 55 117 chrX 159920125 159920739 -17053401 + MLT1G1 LTR MaLR 8 583 -12 235 165 165 113 chrX 159920923 159921056 -17053084 - MIR SINE MIR -71 191 52 2256 78 14 0 chrX 159921201 159921495 -17052645 - AluSx SINE Alu -14 298 1 579 269 150 9 chrX 159921749 159922188 -17051952 - MER90 LTR ERV1 0 575 3 242 203 0 29 chrX 159922215 159922284 -17051856 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 1586 171 11 21 chrX 159922291 159922571 -17051569 - AluJo SINE Alu -30 282 6 970 73 0 0 chrX 159922792 159922915 -17051225 - AluY SINE Alu -17 294 172 317 237 26 13 chrX 159923106 159923182 -17050958 - MIR SINE MIR -107 101 25 251 333 0 39 chrX 159923173 159923251 -17050889 + L2 LINE L2 3234 3308 -5 * 294 277 157 19 chrX 159924199 159924358 -17049782 - MIR SINE MIR -54 208 28 1425 211 10 6 chrX 159924915 159925228 -17048912 - MER58B DNA MER1_type 0 341 28 2914 205 23 82 chrX 159925900 159926305 -17047835 - L1ME1 LINE L1 -2 6164 5737 5333 44 38 0 chrX 159926305 159926967 -17047173 - L1PA10 LINE L1 -11 6157 5471 2914 205 23 82 chrX 159926967 159927465 -17046675 - L1ME1 LINE L1 -429 5737 5337 2131 66 27 17 chrX 159927465 159927766 -17046374 - L1PA10 LINE L1 -4 6164 5861 2914 205 23 82 chrX 159927766 159927931 -17046209 - L1ME1 LINE L1 -829 5337 5164 4802 211 28 12 chrX 159927963 159929100 -17045040 + L1MC4a LINE L1 6652 7806 -2 431 299 176 31 chrX 159929115 159929433 -17044707 + L1MC4a LINE L1 5987 6350 -1458 263 294 87 0 chrX 159930370 159930462 -17043678 - MIR SINE MIR -58 150 51 263 260 290 10 chrX 159930808 159930908 -17043232 + MIR3 SINE MIR 73 200 -8 192 188 0 0 chrX 159931251 159931283 -17042857 - MER5B DNA MER1_type -16 162 131 2254 199 88 35 chrX 159931334 159931993 -17042147 - L1ME3 LINE L1 -22 6140 5447 429 299 24 8 chrX 159932000 159932127 -17042013 + MER5B DNA MER1_type 42 170 -8 402 33 295 0 chrX 159932562 159932623 -17041517 + MADE1 DNA Mariner 2 80 0 411 286 223 5 chrX 159932787 159932993 -17041147 - MIR SINE MIR 0 262 12 405 247 173 19 chrX 159933246 159933408 -17040732 + L2 LINE L2 2156 2342 -972 3236 108 96 8 chrX 159933408 159933927 -17040213 - MER34B LTR ERV1 0 565 1 2337 105 0 3 chrX 159934079 159934393 -17039747 + AluSq SINE Alu 1 313 0 10893 202 71 69 chrX 159934534 159935036 -17039104 - MER34B-int LTR ERV1 -166 4770 4270 1088 157 0 0 chrX 159935036 159935202 -17038938 + FRAM SINE Alu 1 166 0 10893 202 71 69 chrX 159935202 159935993 -17038147 - MER34B-int LTR ERV1 -666 4270 3482 2271 85 0 0 chrX 159935993 159936274 -17037866 + AluSg SINE Alu 19 299 -11 10893 202 71 69 chrX 159936274 159937381 -17036759 - MER34B-int LTR ERV1 -1454 3482 2378 2452 53 0 3 chrX 159937381 159937682 -17036458 - AluY SINE Alu -11 300 1 10893 202 71 69 chrX 159937682 159938290 -17035850 - MER34B-int LTR ERV1 -2558 2378 1772 2300 113 0 7 chrX 159938290 159938585 -17035555 + AluSx SINE Alu 1 295 -17 287 0 93 19 chrX 159938585 159938639 -17035501 + (TATAA)n Simple_repeat Simple_repeat 4 61 0 10893 202 71 69 chrX 159938645 159939515 -17034625 - MER34B-int LTR ERV1 -3164 1772 883 977 192 166 79 chrX 159939824 159940056 -17034084 - MER34B-int LTR ERV1 -4431 1847 1636 1923 99 96 0 chrX 159940056 159940338 -17033802 + AluSg SINE Alu 2 310 0 977 192 166 79 chrX 159940338 159940546 -17033594 - MER34B-int LTR ERV1 -4642 1636 287 265 187 40 13 chrX 159940716 159940791 -17033349 - MER57-int LTR ERV1 -4950 1381 1305 280 165 8 83 chrX 159940859 159940968 -17033172 - MER57-int LTR ERV1 -4824 1716 1022 2871 132 65 8 chrX 159941048 159941555 -17032585 - MER34B LTR ERV1 -29 536 1 356 266 74 79 chrX 159941555 159941758 -17032382 + L2 LINE L2 2339 2540 -774 484 141 207 8 chrX 159941767 159941888 -17032252 + MIR SINE MIR 39 183 -79 469 329 36 29 chrX 159941913 159942019 -17032121 + L2 LINE L2 2572 2676 -638 1411 129 9 0 chrX 159942019 159942236 -17031904 + MER20 DNA MER1_type 1 219 0 469 329 36 29 chrX 159942236 159942403 -17031737 + L2 LINE L2 2676 2847 -467 268 320 50 99 chrX 159942457 159942638 -17031502 + L2 LINE L2 2795 2964 -308 296 260 13 40 chrX 159944336 159944486 -17029654 - L1ME4a LINE L1 -12 6109 5964 186 143 0 0 chrX 159944486 159944521 -17029619 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1315 20 0 0 chrX 159944521 159944674 -17029466 - L1PA8 LINE L1 0 6172 6020 314 282 29 35 chrX 159944728 159944902 -17029238 + MER104 DNA Tc2 5 177 -3 632 168 9 0 chrX 159946624 159946731 -17027409 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1225 98 84 35 chrX 159946722 159947007 -17027133 + Tigger3(Golem) DNA MER2_type 2278 2576 -453 4702 102 4 59 chrX 159947007 159947807 -17026333 + L1PB3 LINE L1 5392 6147 -7 3004 122 19 6 chrX 159947814 159948281 -17025859 + Tigger3(Golem) DNA MER2_type 2557 3029 0 180 111 0 0 chrX 159948293 159948320 -17025820 + (CTGTG)n Simple_repeat Simple_repeat 1 27 0 243 203 0 0 chrX 159948320 159948350 -17025790 + (CTATG)n Simple_repeat Simple_repeat 1 56 0 877 178 32 16 chrX 159948395 159948580 -17025560 + MER5A DNA MER1_type 1 188 -1 636 277 68 62 chrX 159948674 159949013 -17025127 - MLT1J LTR MaLR -34 477 137 22 0 0 0 chrX 159949511 159949533 -17024607 + AT_rich Low_complexity Low_complexity 1 22 0 3259 118 26 57 chrX 159949983 159950566 -17023574 - MER34B LTR ERV1 0 565 1 1682 168 65 9 chrX 159950620 159950941 -17023199 + MER58B DNA MER1_type 3 341 0 1529 152 38 9 chrX 159951121 159951436 -17022704 + MER33 DNA MER1_type 1 324 0 1762 175 3 3 chrX 159951452 159951749 -17022391 - AluJb SINE Alu -11 301 5 811 175 0 31 chrX 159952322 159952482 -17021658 - FAM SINE Alu -6 43 1 323 267 204 40 chrX 159952482 159952658 -17021482 + L1MEd LINE L1 1065 1269 -4936 502 215 30 58 chrX 159953208 159953454 -17020686 + L1MEd LINE L1 2171 2353 -3862 1404 160 66 44 chrX 159953531 159953850 -17020290 - L1MC1 LINE L1 -6 6327 6002 23 0 0 0 chrX 159954221 159954244 -17019896 + AT_rich Low_complexity Low_complexity 1 23 0 2597 174 68 8 chrX 159954409 159954920 -17019220 - MLT1F LTR MaLR 0 542 1 252 0 0 0 chrX 159957443 159957471 -17016669 + (TC)n Simple_repeat Simple_repeat 1 28 0 253 164 0 73 chrX 159958902 159958957 -17015183 + L2 LINE L2 3263 3313 0 776 144 0 38 chrX 159959245 159959377 -17014763 - FLAM_C SINE Alu -16 127 1 3599 218 44 50 chrX 159959491 159960598 -17013542 - L1ME2 LINE L1 -10 6223 5110 2174 146 2 88 chrX 159960598 159961031 -17013109 + MSTD LTR MaLR 1 396 0 3599 218 44 50 chrX 159961031 159962453 -17011687 - L1ME2 LINE L1 -1123 5110 3525 1539 284 66 19 chrX 159962453 159963250 -17010890 + L2 LINE L2 2478 3312 -1 1214 250 112 61 chrX 159963465 159963888 -17010252 - Charlie2 DNA MER1_type -2272 590 131 1722 189 21 50 chrX 159963888 159964264 -17009876 + MLT1A1 LTR MaLR 1 365 0 1214 250 112 61 chrX 159964264 159964396 -17009744 - Charlie2 DNA MER1_type -2731 131 7 563 290 88 13 chrX 159965014 159965252 -17008888 - L1MC1 LINE L1 -1886 5922 5667 380 307 58 0 chrX 159965647 159965784 -17008356 + LTR16C LTR ERVL 5 149 -342 682 283 31 16 chrX 159965816 159966007 -17008133 + LTR16C LTR ERVL 239 432 -59 2725 135 19 12 chrX 159966901 159967324 -17006816 - MSTB LTR MaLR 0 426 1 3541 242 59 24 chrX 159967625 159968213 -17005927 - L1ME2 LINE L1 -3403 2812 2246 1993 217 127 22 chrX 159968213 159968747 -17005393 - MLT1E LTR MaLR -3 590 1 3541 242 59 24 chrX 159968747 159969127 -17005013 - L1ME2 LINE L1 -3969 2246 1881 2373 92 3 0 chrX 159969127 159969432 -17004708 - AluSp SINE Alu -7 306 1 3541 242 59 24 chrX 159969432 159970776 -17003364 - L1ME2 LINE L1 -4334 1881 369 1017 261 139 24 chrX 159970816 159971226 -17002914 - LTR16A1 LTR ERVL 0 457 1 2270 127 13 32 chrX 159971583 159971961 -17002179 + THE1C LTR MaLR 1 371 -4 901 201 90 0 chrX 159972746 159972935 -17001205 - MER63A DNA MER1_type 0 210 5 232 265 68 102 chrX 159973032 159973179 -17000961 - MIR3 SINE MIR -30 178 37 38 75 0 0 chrX 159973190 159973270 -17000870 + AT_rich Low_complexity Low_complexity 1 80 0 600 269 88 13 chrX 159973320 159973547 -17000593 - MIR SINE MIR -17 245 2 24 0 0 0 chrX 159973594 159973618 -17000522 + AT_rich Low_complexity Low_complexity 1 24 0 309 51 0 0 chrX 159973996 159974035 -17000105 + (TG)n Simple_repeat Simple_repeat 1 39 0 2174 131 0 6 chrX 159974147 159974461 -16999679 - AluSq SINE Alu -1 312 1 1481 72 10 0 chrX 159975117 159975312 -16998828 - L1PA10 LINE L1 -5 6163 5967 325 208 115 97 chrX 159975323 159975522 -16998618 - MLT1G LTR MaLR -142 448 243 2303 134 86 8 chrX 159975522 159975917 -16998223 - MSTB LTR MaLR 0 426 1 325 208 115 97 chrX 159975917 159975943 -16998197 - MLT1G LTR MaLR -347 243 219 357 24 0 0 chrX 159976109 159976151 -16997989 + (TG)n Simple_repeat Simple_repeat 1 42 0 227 200 123 15 chrX 159977368 159977433 -16996707 + L2 LINE L2 3180 3251 -62 502 208 0 10 chrX 159977544 159977640 -16996500 + MER8 DNA MER2_type 2 96 -143 337 213 0 0 chrX 159977661 159977722 -16996418 + MER2 DNA MER2_type 285 345 0 1832 231 98 43 chrX 159977847 159978409 -16995731 - MLT1E LTR MaLR 0 593 1 216 97 0 0 chrX 159978552 159978583 -16995557 + (TCC)n Simple_repeat Simple_repeat 3 33 0 885 189 0 0 chrX 159978590 159978733 -16995407 - FRAM SINE Alu -36 140 1 185 329 47 35 chrX 159978739 159978824 -16995316 - L2 LINE L2 0 3272 3187 4297 30 57 0 chrX 159979335 159979863 -16994277 - LTR6B LTR ERV1 0 558 1 194 336 69 30 chrX 159980574 159980705 -16993435 + L3 LINE CR1 117 252 -1325 285 371 50 7 chrX 159981255 159981395 -16992745 + L2 LINE L2 3115 3260 -12 204 40 0 0 chrX 159981403 159981428 -16992712 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 244 286 0 0 chrX 159981477 159981533 -16992607 + L2 LINE L2 3199 3254 -18 1194 214 65 25 chrX 159982187 159982510 -16991630 + MER46C DNA MER2_type 2 337 -1 621 169 71 71 chrX 159982623 159982701 -16991439 + L1MC5 LINE L1 7720 7797 -164 2600 216 10 10 chrX 159982701 159983220 -16990920 - LTR40a LTR ERVL 0 519 1 621 169 71 71 chrX 159983220 159983325 -16990815 + L1MC5 LINE L1 7796 7903 -58 2392 166 21 9 chrX 159983398 159983819 -16990321 - MSTB LTR MaLR 0 426 1 323 113 19 0 chrX 159983819 159983872 -16990268 - MSTB-int LTR MaLR 0 1651 1598 * 608 66 55 0 chrX 159983869 159983960 -16990180 - MSTA-int LTR MaLR -1555 96 1 2498 123 70 5 chrX 159983964 159984362 -16989778 - MSTA LTR MaLR -4 424 1 222 138 17 52 chrX 159984609 159984667 -16989473 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 329 263 38 75 chrX 159984948 159985214 -16988926 - L1ME4a LINE L1 -105 6016 5761 2428 216 42 82 chrX 159985435 159986290 -16987850 + L1MC4 LINE L1 7193 8041 -1 3871 177 84 4 chrX 159986859 159987731 -16986409 - L1MA9 LINE L1 0 6312 5228 2056 173 65 18 chrX 159987855 159988254 -16985886 - MER47B DNA MER2_type 0 418 1 2024 123 102 15 chrX 159988556 159988890 -16985250 + THE1B LTR MaLR 2 364 0 374 246 59 8 chrX 159988985 159989103 -16985037 + MER5C DNA MER1_type 1 124 -200 216 247 156 0 chrX 159989132 159989209 -16984931 + MER5C DNA MER1_type 236 324 0 737 264 35 15 chrX 159989331 159989532 -16984608 + MIR SINE MIR 46 250 -12 279 262 78 0 chrX 159989721 159989824 -16984316 - MLT1J LTR MaLR -2 509 399 455 269 62 35 chrX 159989831 159989976 -16984164 - MLT1J2 LTR MaLR -13 437 289 828 306 156 41 chrX 159990076 159991307 -16982833 - L2 LINE L2 -415 2899 1527 650 274 231 63 chrX 159991304 159991945 -16982195 - L3 LINE CR1 -139 1438 658 * 2320 183 157 9 chrX 159991945 159992512 -16981628 + MLT1E1 LTR MaLR 1 651 -3 650 274 231 63 chrX 159992512 159992600 -16981540 - L3 LINE CR1 -919 658 586 287 196 0 0 chrX 159993481 159993532 -16980608 - MER20 DNA MER1_type 0 219 169 207 0 0 0 chrX 159993537 159993560 -16980580 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1831 151 4 4 chrX 159993576 159993855 -16980285 - AluJo SINE Alu -33 279 1 324 252 37 59 chrX 159993857 159993992 -16980148 - L1ME4a LINE L1 -2156 5652 5521 182 259 198 35 chrX 159995102 159995218 -16978922 - L2 LINE L2 -733 2581 2447 183 129 0 0 chrX 159995330 159995361 -16978779 + (TATATG)n Simple_repeat Simple_repeat 4 34 0 933 198 0 24 chrX 159995381 159995426 -16978714 + MER58A DNA MER1_type 5 50 -291 2379 84 3 0 chrX 159995426 159995723 -16978417 - AluSx SINE Alu -14 298 1 933 198 0 24 chrX 159995723 159995844 -16978296 + MER58A DNA MER1_type 50 167 -57 253 239 0 0 chrX 159996129 159996175 -16977965 - MER2 DNA MER2_type -2 343 298 180 78 0 59 chrX 159996183 159996234 -16977906 + (TAAAAA)n Simple_repeat Simple_repeat 1 48 0 1746 223 132 43 chrX 159996252 159996898 -16977242 + MER50 LTR ERV1 13 715 -19 376 115 0 0 chrX 159996920 159996981 -16977159 - MER2 DNA MER2_type -150 195 135 980 136 7 0 chrX 159997032 159997172 -16976968 - MER2 DNA MER2_type -203 142 2 2771 149 9 13 chrX 159997178 159997629 -16976511 + LOR1b LTR ERV1 13 461 0 208 284 40 14 chrX 159997648 159997722 -16976418 - L2 LINE L2 -4 3268 3193 222 287 124 8 chrX 159997852 159997981 -16976159 + L2 LINE L2 2344 2487 -827 1792 153 78 9 chrX 159998210 159998531 -16975609 + MER61A LTR ERV1 1 343 0 454 311 0 0 chrX 159998680 159998799 -16975341 - L2 LINE L2 0 3313 3195 657 135 0 0 chrX 159998799 159998895 -16975245 + FRAM SINE Alu 70 165 -11 189 255 5 181 chrX 159999021 159999093 -16975047 - L2 LINE L2 -149 3164 3081 21 0 0 0 chrX 159999093 159999114 -16975026 + AT_rich Low_complexity Low_complexity 1 21 0 189 255 5 181 chrX 159999114 159999225 -16974915 - L2 LINE L2 -232 3081 2997 * 823 311 43 34 chrX 159999204 159999645 -16974495 - L2 LINE L2 -423 2891 2447 23 54 0 0 chrX 159999756 159999793 -16974347 + AT_rich Low_complexity Low_complexity 1 37 0 896 93 0 0 chrX 159999904 160000033 -16974107 + L1PA7 LINE L1 6026 6154 0 2018 87 68 0 chrX 160000290 160000582 -16973558 + AluSp SINE Alu 1 310 0 239 143 41 0 chrX 160000799 160000848 -16973292 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 2356 119 0 0 chrX 160001561 160001873 -16972267 - AluSx SINE Alu 0 312 1 2607 156 59 2 chrX 160001960 160002402 -16971738 + LTR24 LTR ERV1 1 467 0 1909 146 14 17 chrX 160003160 160003455 -16970685 - AluJb SINE Alu -16 296 3 784 279 68 62 chrX 160004877 160005332 -16968808 + MLT1J LTR MaLR 3 460 -51 2126 188 5 20 chrX 160005677 160006075 -16968065 + MSTD LTR MaLR 5 396 0 385 325 36 31 chrX 160006231 160006425 -16967715 - L2 LINE L2 -2 3311 3117 232 218 238 40 chrX 160007250 160007351 -16966789 + MER34 LTR ERV1 1 121 -421 956 192 66 75 chrX 160007438 160007756 -16966384 + MER39 LTR ERV1 391 705 -2 879 315 178 30 chrX 160008057 160008683 -16965457 + L2 LINE L2 1308 2040 -1274 984 213 5 0 chrX 160008683 160008871 -16965269 + MER5A DNA MER1_type 1 189 0 879 315 178 30 chrX 160008871 160008911 -16965229 + L2 LINE L2 2040 2073 -1241 381 185 12 0 chrX 160008922 160009003 -16965137 - MLT1H LTR MaLR 0 549 468 591 330 94 20 chrX 160009080 160009377 -16964763 - LTR16C LTR ERVL -92 399 81 271 357 107 29 chrX 160009453 160009697 -16964443 + L2 LINE L2 3007 3269 -3 244 204 41 0 chrX 160010786 160010835 -16963305 - Charlie2 DNA MER1_type -2200 582 532 245 299 39 98 chrX 160011014 160011268 -16962872 + MLT1K LTR MaLR 192 430 -158 3502 123 10 26 chrX 160011409 160011988 -16962152 + MER34C LTR ERV1 5 574 -11 381 250 0 27 chrX 160012064 160012176 -16961964 + MLT1K LTR MaLR 479 587 -1 610 183 29 120 chrX 160012795 160012882 -16961258 - LTR8A LTR ERV1 0 727 662 2403 87 0 7 chrX 160012882 160013192 -16960948 + AluY SINE Alu 1 308 -3 610 183 29 120 chrX 160013192 160013279 -16960861 - LTR8A LTR ERV1 -65 662 569 2525 72 102 5 chrX 160013287 160013690 -16960450 - LTR7 LTR ERV1 -8 442 1 2141 97 52 29 chrX 160013690 160014071 -16960069 - HERVH LTR ERV1 0 7713 7324 1301 139 19 0 chrX 160014071 160014287 -16959853 - HERVH LTR ERV1 -1894 5819 5600 4193 136 0 1 chrX 160014288 160014951 -16959189 - HERVH LTR ERV1 -2564 5149 4488 3182 109 4 6 chrX 160014953 160015456 -16958684 - HERVH LTR ERV1 -3720 3993 3492 622 159 32 0 chrX 160015446 160015572 -16958568 - HERVH LTR ERV1 -4423 3290 3161 * 19674 88 10 15 chrX 160015572 160018581 -16955559 - HERVH LTR ERV1 -4718 2995 1 2707 75 123 0 chrX 160018583 160018982 -16955158 - LTR7 LTR ERV1 -2 448 1 2208 167 80 122 chrX 160019359 160019446 -16954694 - LTR8A LTR ERV1 0 727 638 2247 107 0 7 chrX 160019446 160019744 -16954396 + AluY SINE Alu 1 296 -15 2208 167 80 122 chrX 160019744 160020380 -16953760 - LTR8A LTR ERV1 -89 638 34 28 0 0 0 chrX 160020807 160020835 -16953305 + AT_rich Low_complexity Low_complexity 1 28 0 2373 96 6 3 chrX 160020898 160021210 -16952930 + AluSq SINE Alu 1 313 0 25 0 0 0 chrX 160021598 160021623 -16952517 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 160022293 160022317 -16951823 + AT_rich Low_complexity Low_complexity 1 24 0 257 252 74 89 chrX 160022981 160023116 -16951024 + L2 LINE L2 2606 2738 -576 1383 171 3 17 chrX 160023223 160023521 -16950619 - MER3 DNA MER1_type 0 2623 2330 954 125 5 16 chrX 160023969 160024153 -16949987 - MER3 DNA MER1_type 0 2337 2156 1294 208 28 91 chrX 160024179 160024388 -16949752 - MER39 LTR ERV1 -31 676 455 580 265 121 48 chrX 160024388 160024803 -16949337 - MER65A LTR ERV1 0 445 1 1294 208 28 91 chrX 160024803 160025134 -16949006 - MER39 LTR ERV1 -252 455 5 703 180 7 7 chrX 160025142 160025292 -16948848 - MER3 DNA MER1_type 0 2134 1985 280 232 43 0 chrX 160025290 160025359 -16948781 - MER3 DNA MER1_type -99 110 39 * 622 349 75 20 chrX 160025431 160025789 -16948351 + L2 LINE L2 2936 3313 0 370 195 39 0 chrX 160026230 160026307 -16947833 - L1ME3A LINE L1 -56 6114 6035 909 121 52 31 chrX 160026307 160026564 -16947576 + L1MB8 LINE L1 5180 5440 -738 899 143 0 0 chrX 160026564 160026697 -16947443 + FLAM_C SINE Alu 1 133 -10 1509 154 14 11 chrX 160026705 160026984 -16947156 + L1MB8 LINE L1 5428 5707 -471 1850 242 10 30 chrX 160027117 160027613 -16946527 + LTR31 LTR ERV1 125 610 -9 2388 141 18 75 chrX 160027617 160027977 -16946163 + L1MB8 LINE L1 5703 6027 -151 1693 181 7 11 chrX 160027977 160028264 -16945876 - AluJo SINE Alu -26 286 1 2388 141 18 75 chrX 160028264 160028406 -16945734 + L1MB8 LINE L1 6027 6176 -2 1085 256 79 43 chrX 160028447 160028730 -16945410 - LTR16A1 LTR ERVL 0 457 151 321 82 0 0 chrX 160028730 160028779 -16945361 + (TG)n Simple_repeat Simple_repeat 2 50 0 1085 256 79 43 chrX 160028779 160028936 -16945204 - LTR16A1 LTR ERVL -306 151 1 2085 208 59 81 chrX 160029523 160030129 -16944011 - MLT1E LTR MaLR 0 593 1 228 244 0 0 chrX 160030322 160030367 -16943773 + L2 LINE L2 2939 2983 -330 * 261 246 33 0 chrX 160030366 160030427 -16943713 + L2 LINE L2 3209 3271 -1 1558 234 6 70 chrX 160031108 160031583 -16942557 + MLT2B1 LTR ERVL 1 445 -75 430 285 77 14 chrX 160031734 160031941 -16942199 + LTR33 LTR ERVL 240 459 -62 973 195 26 16 chrX 160031943 160032244 -16941896 - L1MD3 LINE L1 -5 7990 6059 265 282 0 12 chrX 160032244 160032329 -16941811 + LTR33 LTR ERVL 438 521 0 272 211 39 0 chrX 160032528 160032580 -16941560 - MER5A DNA MER1_type 0 189 136 560 280 0 15 chrX 160032623 160032755 -16941385 - MER5B DNA MER1_type -48 130 1 428 325 67 57 chrX 160032755 160033143 -16940997 - L1M4 LINE L1 -1022 5124 4733 968 216 67 84 chrX 160033317 160033798 -16940342 + MER39 LTR ERV1 5 625 -64 194 0 39 0 chrX 160033798 160033824 -16940316 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 968 216 67 84 chrX 160033824 160033886 -16940254 + MER39 LTR ERV1 625 687 -2 216 0 0 0 chrX 160033936 160033960 -16940180 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2502 72 0 10 chrX 160034451 160034756 -16939384 - AluSp SINE Alu -11 302 1 2585 58 0 0 chrX 160034761 160035072 -16939068 - AluY SINE Alu 0 311 1 1433 210 97 44 chrX 160035323 160035757 -16938383 - MSTB2 LTR MaLR 0 457 1 322 257 28 18 chrX 160035865 160035974 -16938166 + (TATG)n Simple_repeat Simple_repeat 3 112 0 1817 94 0 0 chrX 160036208 160036452 -16937688 + L1PA6 LINE L1 5909 6152 -2 1004 158 103 5 chrX 160037389 160037592 -16936548 - MLT1B LTR MaLR -46 344 122 1611 139 0 8 chrX 160037597 160037841 -16936299 - L1PB4 LINE L1 -13 6143 5902 9389 177 34 18 chrX 160037861 160041667 -16932473 - L1MA2 LINE L1 0 6304 2424 466 48 0 0 chrX 160041672 160041734 -16932406 + MADE1 DNA Mariner 18 79 -1 1569 197 121 26 chrX 160041877 160042299 -16931841 + MLT1C LTR MaLR 4 465 -2 546 94 51 8 chrX 160042341 160042458 -16931682 + CT-rich Low_complexity Low_complexity 2 123 0 870 195 12 32 chrX 160042478 160042724 -16931416 - L1MC5 LINE L1 -25 7936 7696 335 244 0 0 chrX 160042964 160043042 -16931098 - MER116 DNA Mariner -2 78 1 254 302 167 0 chrX 160043122 160043248 -16930892 + L2 LINE L2 3158 3304 -9 969 247 111 56 chrX 160043725 160044242 -16929898 - MLT1H1 LTR MaLR -2 540 7 209 159 23 0 chrX 160044650 160044694 -16929446 + (TA)n Simple_repeat Simple_repeat 1 45 0 21 71 0 0 chrX 160044955 160044997 -16929143 + AT_rich Low_complexity Low_complexity 1 42 0 294 29 0 0 chrX 160045118 160045153 -16928987 + (TG)n Simple_repeat Simple_repeat 2 36 0 1107 239 29 4 chrX 160047322 160047565 -16926575 - MIR SINE MIR -13 249 1 865 278 14 9 chrX 160047843 160048066 -16926074 + MIR SINE MIR 34 257 -5 218 156 0 0 chrX 160048367 160048399 -16925741 + MIR SINE MIR 221 252 -10 940 221 21 45 chrX 160049099 160049239 -16924901 + LTR37B LTR ERV1 7 149 -319 1987 155 0 3 chrX 160049239 160049549 -16924591 - AluJo SINE Alu -3 309 1 940 221 21 45 chrX 160049549 160049925 -16924215 + LTR37B LTR ERV1 149 468 0 204 267 27 40 chrX 160050032 160050107 -16924033 - L2 LINE L2 -2979 335 262 234 91 0 0 chrX 160050213 160050246 -16923894 + (A)n Simple_repeat Simple_repeat 1 33 0 627 270 168 13 chrX 160050595 160050821 -16923319 + MIR SINE MIR 2 262 0 214 325 25 100 chrX 160051619 160051739 -16922401 + L3 LINE CR1 853 963 -614 239 405 24 24 chrX 160051743 160051911 -16922229 + L3 LINE CR1 1397 1564 -13 2761 178 51 29 chrX 160051937 160052185 -16921955 - L1ME2 LINE L1 0 6164 5923 2180 133 24 3 chrX 160052185 160052523 -16921617 - MER7A DNA MER2_type 0 346 4 2761 178 51 29 chrX 160052523 160052936 -16921204 - L1ME2 LINE L1 -241 5923 5488 5486 120 39 1 chrX 160053040 160054020 -16920120 + L1PA16 LINE L1 5143 6160 -6 3790 152 9 16 chrX 160054367 160055013 -16919127 + LTR48B LTR ERV1 3 644 0 619 264 109 20 chrX 160055131 160055332 -16918808 - MIR SINE MIR -2 260 42 883 217 119 24 chrX 160055403 160055739 -16918401 + Charlie2 DNA MER1_type 2457 2824 -38 254 367 55 0 chrX 160055765 160055874 -16918266 + L2 LINE L2 3153 3267 -5 1523 96 0 10 chrX 160056500 160056697 -16917443 - AluSx SINE Alu -117 195 1 3490 140 87 55 chrX 160056785 160057547 -16916593 - LTR48 LTR ERV1 -1 786 1 418 204 161 0 chrX 160057803 160057896 -16916244 - MER5A DNA MER1_type -81 108 1 201 100 25 25 chrX 160058315 160058355 -16915785 + (CAAA)n Simple_repeat Simple_repeat 4 43 0 205 232 179 0 chrX 160058358 160058414 -16915726 + MIR3 SINE MIR 133 198 -10 397 293 20 20 chrX 160059693 160059843 -16914297 - MIR SINE MIR -29 233 84 355 329 79 22 chrX 160060234 160060583 -16913557 + MLT1J LTR MaLR 223 507 -4 539 229 39 117 chrX 160060905 160061285 -16912855 + MLT1H LTR MaLR 95 549 0 1299 110 35 0 chrX 160061875 160062103 -16912037 + L1 LINE L1 4144 4379 -1767 6897 113 21 9 chrX 160062121 160063710 -16910430 - L1MA2 LINE L1 -12 6292 4677 2117 138 7 0 chrX 160063710 160064015 -16910125 - AluY SINE Alu -4 307 1 6897 113 21 9 chrX 160064015 160064310 -16909830 - L1MA2 LINE L1 -1627 4677 4387 2889 166 230 3 chrX 160064308 160064942 -16909198 - L1M1 LINE L1 -6165 1400 623 * 622 236 6 12 chrX 160065203 160065228 -16908912 - L1MA10 LINE L1 -2 6332 6308 1283 242 13 30 chrX 160065228 160065624 -16908516 - L1ME1 LINE L1 -19 6147 5759 1158 188 169 28 chrX 160066228 160066548 -16907592 - MLT1F LTR MaLR -2 540 176 406 200 71 43 chrX 160066557 160066697 -16907443 + LTR8 LTR ERV1 1 144 -547 2338 152 23 37 chrX 160066752 160066929 -16907211 + MSTA LTR MaLR 1 179 -249 2161 109 0 0 chrX 160066929 160067238 -16906902 - AluSq SINE Alu 0 309 1 2338 152 23 37 chrX 160067238 160067493 -16906647 + MSTA LTR MaLR 179 428 0 1002 191 103 72 chrX 160067607 160068025 -16906115 + LTR8A LTR ERV1 289 719 -8 738 194 13 26 chrX 160068033 160068188 -16905952 - MLT1F LTR MaLR -387 155 3 896 166 10 60 chrX 160068296 160068495 -16905645 + MER20 DNA MER1_type 31 219 0 912 156 0 0 chrX 160068694 160068954 -16905186 + (CA)n Simple_repeat Simple_repeat 1 260 0 2313 109 0 0 chrX 160069684 160069987 -16904153 + AluSx SINE Alu 1 303 -9 297 141 13 26 chrX 160070158 160070236 -16903904 + GA-rich Low_complexity Low_complexity 2 78 0 317 158 0 0 chrX 160070237 160070294 -16903846 + MLT1D LTR MaLR 64 120 -385 1446 190 84 45 chrX 160070296 160070675 -16903465 - MLT1D LTR MaLR -106 399 6 225 0 0 0 chrX 160070737 160070762 -16903378 + (CA)n Simple_repeat Simple_repeat 1 25 0 278 306 35 0 chrX 160071545 160071630 -16902510 - MIR3 SINE MIR -15 193 106 417 304 37 48 chrX 160071635 160071987 -16902153 - MLT1H LTR MaLR 0 549 95 213 322 56 33 chrX 160072065 160072155 -16901985 - MIR3 SINE MIR -107 101 10 2259 113 0 22 chrX 160072741 160073059 -16901081 - AluSq SINE Alu -2 311 1 22 56 0 0 chrX 160073972 160074008 -16900132 + AT_rich Low_complexity Low_complexity 1 36 0 1735 262 16 13 chrX 160074144 160074591 -16899549 + LTR16C LTR ERVL 38 485 -6 2063 144 0 35 chrX 160074622 160074758 -16899382 + MLT-int LTR MaLR 6 145 -1590 2703 91 6 3 chrX 160074758 160075121 -16899019 - THE1B LTR MaLR 0 364 1 2063 144 0 35 chrX 160075121 160075353 -16898787 + MLT-int LTR MaLR 145 361 -1374 1833 144 114 59 chrX 160075579 160075841 -16898299 + MLT1A1-int LTR MaLR 1310 1604 -131 1918 137 22 0 chrX 160075841 160076156 -16897984 - AluSx SINE Alu 0 321 1 1833 144 114 59 chrX 160076156 160076296 -16897844 + MLT1A1-int LTR MaLR 1604 1735 0 1370 214 75 17 chrX 160076296 160076641 -16897499 + MLT1A1 LTR MaLR 1 365 0 277 221 19 0 chrX 160076911 160077015 -16897125 + (TGGA)n Simple_repeat Simple_repeat 4 109 0 2888 115 0 36 chrX 160077334 160077573 -16896567 - MSTA LTR MaLR 0 428 182 185 0 40 0 chrX 160077573 160077598 -16896542 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2295 84 3 14 chrX 160077600 160077897 -16896243 - AluSp SINE Alu -19 294 1 2888 115 0 36 chrX 160077897 160078096 -16896044 - MSTA LTR MaLR -247 181 3 210 77 39 39 chrX 160078109 160078161 -16895979 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 253 250 8 148 chrX 160078340 160078468 -16895672 - MIR SINE MIR -71 191 82 208 204 19 19 chrX 160078740 160078794 -16895346 + GA-rich Low_complexity Low_complexity 5 58 0 610 260 109 10 chrX 160078995 160079187 -16894953 + MIR SINE MIR 41 251 -11 385 316 58 26 chrX 160079253 160079443 -16894697 - L2 LINE L2 -203 3069 2874 2341 113 3 0 chrX 160079473 160079816 -16894324 - AluSx SINE Alu 0 346 3 2248 144 0 8 chrX 160079911 160080279 -16893861 - MER47A DNA MER2_type -1 365 1 550 308 95 29 chrX 160080413 160080822 -16893318 - LTR16B LTR ERVL -5 445 10 1104 258 130 18 chrX 160080968 160081413 -16892727 - MLT1H LTR MaLR -42 507 13 211 217 43 0 chrX 160081586 160081632 -16892508 + MIR SINE MIR 98 145 -117 1007 250 59 0 chrX 160081708 160081944 -16892196 + MIR SINE MIR 7 256 -6 583 261 33 7 chrX 160083380 160083533 -16890607 + MIR SINE MIR 71 227 -35 827 194 15 65 chrX 160084020 160084224 -16889916 - L1MC5 LINE L1 -52 7909 7719 734 181 181 5 chrX 160084224 160084412 -16889728 + MER58A DNA MER1_type 4 224 0 827 194 15 65 chrX 160084412 160084470 -16889670 - L1MC5 LINE L1 -242 7719 7660 330 244 19 119 chrX 160084521 160084681 -16889459 - MIR SINE MIR -46 216 73 222 244 39 51 chrX 160085356 160085434 -16888706 - MIR SINE MIR -116 146 70 2055 86 48 67 chrX 160085696 160086010 -16888130 + AluSc SINE Alu 1 308 -1 2423 179 43 37 chrX 160086105 160086218 -16887922 + L1MD3 LINE L1 7412 7523 -472 2233 166 96 19 chrX 160086218 160086687 -16887453 + MLT1D LTR MaLR 1 505 0 2423 179 43 37 chrX 160086687 160087136 -16887004 + L1MD3 LINE L1 7523 7977 -18 2521 187 69 22 chrX 160087807 160088342 -16885798 - MLT1F1 LTR MaLR -7 560 1 2558 66 0 0 chrX 160089441 160089746 -16884394 - AluY SINE Alu -6 305 1 250 304 13 13 chrX 160090348 160090427 -16883713 + L2 LINE L2 3234 3312 -1 489 245 269 14 chrX 160090543 160090751 -16883389 - MIR SINE MIR 0 262 2 1943 224 45 13 chrX 160095026 160095561 -16878579 - L1ME3 LINE L1 -11 6151 5600 311 279 18 81 chrX 160095635 160095746 -16878394 + MER5A DNA MER1_type 22 125 -64 572 288 17 23 chrX 160096189 160096366 -16877774 + MIR3 SINE MIR 24 199 -9 2204 102 0 0 chrX 160096800 160097113 -16877027 + AluSx SINE Alu 1 313 0 427 237 0 12 chrX 160097214 160097383 -16876757 + (TGGA)n Simple_repeat Simple_repeat 2 168 0 991 155 31 10 chrX 160097864 160098057 -16876083 - MER3 DNA MER1_type -7 202 6 274 307 97 23 chrX 160098460 160098636 -16875504 + L2 LINE L2 2865 3053 -219 192 259 161 70 chrX 160098879 160099022 -16875118 - MIR3 SINE MIR -22 186 31 2522 54 3 0 chrX 160299684 160299982 -16674158 - AluY SINE Alu -12 299 1 343 299 27 21 chrX 160300075 160300262 -16673878 - L1ME LINE L1 -389 5781 5594 1814 179 0 0 chrX 160300267 160300579 -16673561 - AluJo SINE Alu 0 312 1 328 233 183 8 chrX 160300612 160300732 -16673408 - L1ME LINE L1 -650 5512 5372 279 0 0 0 chrX 160300854 160300885 -16673255 + (T)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chrX 160301939 160301967 -16672173 + AT_rich Low_complexity Low_complexity 1 28 0 596 124 21 10 chrX 160302454 160302551 -16671589 + MER4A LTR ERV1 1 98 -566 1494 164 184 42 chrX 160302551 160302905 -16671235 + MER4A LTR ERV1 261 664 0 203 171 0 0 chrX 160302913 160302954 -16671186 + GA-rich Low_complexity Low_complexity 1 41 0 791 154 0 28 chrX 160303851 160303994 -16670146 - LTR7 LTR ERV1 -311 139 1 22 0 0 0 chrX 160304024 160304046 -16670094 + AT_rich Low_complexity Low_complexity 1 22 0 2308 114 29 24 chrX 160304119 160304497 -16669643 + Tigger2a DNA MER2_type 1 380 -54 2272 88 3 7 chrX 160305030 160305335 -16668805 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 160307337 160307733 -16666407 - L1PA16 LINE L1 -45 6121 5688 2298 90 13 3 chrX 160307733 160308034 -16666106 - AluSc SINE Alu -5 304 1 2228 135 106 34 chrX 160308034 160308080 -16666060 - L1PA16 LINE L1 -478 5688 5647 23 86 0 0 chrX 160308105 160308163 -16665977 + AT_rich Low_complexity Low_complexity 1 58 0 571 213 0 0 chrX 160309012 160309120 -16665020 - AluJb SINE Alu -23 289 182 2068 179 25 0 chrX 160309254 160309646 -16664494 + MER57A LTR ERV1 2 403 0 253 173 13 40 chrX 160309649 160309724 -16664416 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 279 257 17 0 chrX 160309732 160309919 -16664221 + (TA)n Simple_repeat Simple_repeat 1 190 0 358 330 30 35 chrX 160309955 160310152 -16663988 + MIR SINE MIR 43 238 -24 1231 184 9 0 chrX 160311407 160311624 -16662516 - AluJo SINE Alu -7 305 87 1373 188 120 0 chrX 160311767 160312033 -16662107 - AluJb SINE Alu -14 298 1 222 37 0 0 chrX 160312940 160312967 -16661173 + (TG)n Simple_repeat Simple_repeat 1 27 0 203 79 26 0 chrX 160313656 160313694 -16660446 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 681 210 0 37 chrX 160313714 160313726 -16660414 - AluJo/FRAM SINE Alu -9 303 292 1955 143 4 4 chrX 160313726 160314005 -16660135 - AluSx SINE Alu -33 279 1 681 210 0 37 chrX 160314005 160314154 -16659986 - AluJo/FRAM SINE Alu -20 292 148 237 65 0 0 chrX 160314176 160314207 -16659933 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 6442 198 10 26 chrX 160314210 160314899 -16659241 - L1PA15 LINE L1 -5 6160 5462 2338 70 0 17 chrX 160314899 160315199 -16658941 - AluY SINE Alu -16 295 1 6442 198 10 26 chrX 160315199 160315370 -16658770 - L1PA15 LINE L1 -703 5462 5290 1892 137 3 36 chrX 160315370 160315697 -16658443 - AluSx SINE Alu 0 312 1 6442 198 10 26 chrX 160315697 160317174 -16656966 - L1PA15 LINE L1 -875 5290 3867 281 322 167 60 chrX 160317178 160317694 -16656446 + L2 LINE L2 1268 1838 -1476 204 184 31 0 chrX 160318949 160319047 -16655093 + (TA)n Simple_repeat Simple_repeat 2 102 0 324 0 0 0 chrX 160319097 160319133 -16655007 + (CA)n Simple_repeat Simple_repeat 2 37 0 651 173 48 7 chrX 160319134 160319251 -16654889 + (TCTA)n Simple_repeat Simple_repeat 1 112 -496 2235 131 0 0 chrX 160319251 160319563 -16654577 - AluSx SINE Alu 0 312 1 651 173 48 7 chrX 160319563 160319719 -16654421 + (TCTA)n Simple_repeat Simple_repeat 112 608 0 581 73 85 18 chrX 160319774 160319938 -16654202 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 729 102 40 23 chrX 160319958 160320135 -16654005 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 200 125 25 25 chrX 160320202 160320242 -16653898 + CT-rich Low_complexity Low_complexity 2 41 0 26 0 0 0 chrX 160321903 160321929 -16652211 + AT_rich Low_complexity Low_complexity 1 26 0 413 226 12 18 chrX 160322809 160322973 -16651167 + CT-rich Low_complexity Low_complexity 3 165 0 1393 221 46 14 chrX 160323259 160323630 -16650510 + L1MC3 LINE L1 7026 7408 -377 1794 135 3 30 chrX 160323630 160323985 -16650155 - MER4A LTR ERV1 0 664 261 270 129 400 0 chrX 160323985 160324055 -16650085 - MER4A LTR ERV1 -566 98 1 270 263 13 0 chrX 160324055 160324131 -16650009 + L1MC3 LINE L1 7405 7481 -304 833 166 11 17 chrX 160325469 160325791 -16648349 + CT-rich Low_complexity Low_complexity 1 320 0 995 178 0 0 chrX 160326034 160326186 -16647954 + AluJb SINE Alu 129 280 -32 26 0 0 0 chrX 160326187 160326213 -16647927 + AT_rich Low_complexity Low_complexity 1 26 0 507 213 110 55 chrX 160327303 160327467 -16646673 + MER58B DNA MER1_type 168 340 -1 300 111 0 0 chrX 160327727 160327772 -16646368 + (TA)n Simple_repeat Simple_repeat 1 45 0 392 329 117 49 chrX 160327852 160328849 -16645291 + L1 LINE L1 4128 5204 -942 1594 187 78 36 chrX 160329290 160329675 -16644465 - LTR2B LTR ERV1 -58 432 32 394 191 60 77 chrX 160329696 160329752 -16644388 + Charlie1 DNA MER1_type 2502 2557 -204 2284 101 0 3 chrX 160329752 160330060 -16644080 + AluSq SINE Alu 5 311 -2 394 191 60 77 chrX 160330060 160330238 -16643902 + Charlie1 DNA MER1_type 2557 2732 -29 326 153 36 29 chrX 160330260 160330397 -16643743 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 2318 88 3 0 chrX 160330466 160330763 -16643377 - AluSx SINE Alu -14 298 1 411 284 100 50 chrX 160330796 160331035 -16643105 + MIR SINE MIR 5 255 -7 654 204 6 16 chrX 160331307 160331821 -16642319 + GA-rich Low_complexity Low_complexity 1 508 0 2643 197 16 25 chrX 160333256 160333805 -16640335 + L1PA16 LINE L1 5619 6162 -4 268 227 136 0 chrX 160333806 160333872 -16640268 + Tigger2 DNA MER2_type 2644 2718 0 2340 118 25 6 chrX 160334328 160334685 -16639455 + THE1B LTR MaLR 1 364 0 1164 243 25 97 chrX 160334768 160335323 -16638817 - L1ME3A LINE L1 -5 6165 5651 2168 119 39 30 chrX 160336003 160336364 -16637776 + THE1B LTR MaLR 1 364 0 360 320 74 27 chrX 160336440 160336696 -16637444 - ERVL LTR ERVL -1545 4219 3952 222 214 0 0 chrX 160338017 160338059 -16636081 + GA-rich Low_complexity Low_complexity 2 43 0 2211 104 14 0 chrX 160338167 160338456 -16635684 + AluSx SINE Alu 1 293 -19 201 143 0 0 chrX 160338705 160338740 -16635400 + (CAGA)n Simple_repeat Simple_repeat 3 37 0 796 176 6 6 chrX 160338740 160338916 -16635224 + GA-rich Low_complexity Low_complexity 3 178 0 770 167 21 0 chrX 160338927 160339164 -16634976 + GA-rich Low_complexity Low_complexity 1 242 0 1374 91 11 0 chrX 160340599 160340775 -16633365 + AluSx SINE Alu 2 179 -133 958 62 78 0 chrX 160340855 160340984 -16633156 + MER85 DNA T2_type 1 139 0 23 0 0 0 chrX 160341214 160341237 -16632903 + AT_rich Low_complexity Low_complexity 1 23 0 238 327 86 67 chrX 160342044 160342405 -16631735 - L2 LINE L2 0 3313 2946 2113 141 0 0 chrX 160342557 160342855 -16631285 - AluSx SINE Alu -14 298 1 29 78 0 0 chrX 160343686 160343750 -16630390 + AT_rich Low_complexity Low_complexity 1 64 0 318 132 0 0 chrX 160344074 160344127 -16630013 + (TG)n Simple_repeat Simple_repeat 2 54 0 2474 53 0 38 chrX 160344302 160344620 -16629520 + AluY SINE Alu 1 306 -5 970 126 6 55 chrX 160345163 160345187 -16628953 - L1MA2 LINE L1 -5 6299 6275 2561 105 6 3 chrX 160345187 160345548 -16628592 + THE1B LTR MaLR 3 364 0 970 126 6 55 chrX 160345548 160345705 -16628435 - L1MA2 LINE L1 -29 6275 6127 397 293 37 111 chrX 160345777 160346047 -16628093 + L2 LINE L2 969 1218 -2096 2245 146 3 5 chrX 160346112 160346482 -16627658 - L1PB4 LINE L1 -6 6150 5782 223 206 29 29 chrX 160346600 160346635 -16627505 + CT-rich Low_complexity Low_complexity 2 39 -30 1521 197 7 10 chrX 160346635 160346925 -16627215 - AluJb SINE Alu -23 289 1 223 206 29 29 chrX 160346925 160346957 -16627183 + CT-rich Low_complexity Low_complexity 38 69 0 790 75 47 31 chrX 160347680 160347936 -16626204 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 21 57 0 0 chrX 160348443 160348478 -16625662 + AT_rich Low_complexity Low_complexity 1 35 0 3064 147 49 9 chrX 160348594 160349167 -16624973 - L1MA4 LINE L1 -5 6295 5700 884 140 6 13 chrX 160349369 160349526 -16624614 - L1MA4 LINE L1 -593 5710 5555 2126 140 19 22 chrX 160349533 160349898 -16624242 - THE1B LTR MaLR 0 364 1 2131 145 0 0 chrX 160350295 160350592 -16623548 + AluSx SINE Alu 1 297 -15 1246 154 13 18 chrX 160350731 160350958 -16623182 - MLT1B LTR MaLR -1 389 164 2269 96 0 3 chrX 160350975 160351267 -16622873 - AluSq SINE Alu -22 291 1 1631 184 0 27 chrX 160351284 160351578 -16622562 - AluJb SINE Alu -24 288 3 939 193 6 0 chrX 160351580 160351756 -16622384 - MLT1B LTR MaLR -213 177 1 1167 141 5 35 chrX 160352511 160352734 -16621406 - AluJb SINE Alu 0 306 90 1828 179 0 0 chrX 160352897 160353221 -16620919 + L1MA9 LINE L1 5464 5787 -525 606 123 29 29 chrX 160353231 160353402 -16620738 + (TCTA)n Simple_repeat Simple_repeat 4 174 0 634 130 11 43 chrX 160353445 160353629 -16620511 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1266 228 72 70 chrX 160353630 160354100 -16620040 + L1MA9 LINE L1 5804 6274 -38 21 0 0 0 chrX 160354101 160354122 -16620018 + AT_rich Low_complexity Low_complexity 1 21 0 776 156 0 15 chrX 160354377 160354512 -16619628 + FLAM_C SINE Alu 1 133 -10 1590 160 0 70 chrX 160355534 160355834 -16618306 + AluJo SINE Alu 1 279 -33 357 24 0 0 chrX 160357159 160357201 -16616939 + (TA)n Simple_repeat Simple_repeat 1 42 0 780 130 22 29 chrX 160357311 160357449 -16616691 - AluJo SINE Alu -175 137 1 280 85 21 0 chrX 160358400 160358447 -16615693 - MADE1 DNA Mariner 0 80 33 207 100 0 0 chrX 160358707 160358737 -16615403 + (A)n Simple_repeat Simple_repeat 1 30 0 286 179 0 0 chrX 160359517 160359573 -16614567 + L1MA9 LINE L1 5943 5998 -170 1160 194 48 39 chrX 160359647 160359807 -16614333 + L1MA9 LINE L1 5995 6152 -160 459 0 0 0 chrX 160359807 160359858 -16614282 + (CA)n Simple_repeat Simple_repeat 1 51 0 1160 194 48 39 chrX 160359858 160359878 -16614262 + L1MA9 LINE L1 6152 6170 -142 2473 169 50 67 chrX 160359878 160360501 -16613639 - LTR9 LTR ERV1 0 612 1 1160 194 48 39 chrX 160360501 160360629 -16613511 + L1MA9 LINE L1 6170 6307 -5 23 0 0 0 chrX 160361176 160361199 -16612941 + AT_rich Low_complexity Low_complexity 1 23 0 723 118 31 16 chrX 160361309 160361546 -16612594 + (TCTA)n Simple_repeat Simple_repeat 1 240 0 868 139 10 19 chrX 160361584 160361901 -16612239 + (TCTA)n Simple_repeat Simple_repeat 1 313 0 467 182 7 26 chrX 160361924 160362078 -16612062 + (TCTA)n Simple_repeat Simple_repeat 3 153 0 439 186 258 8 chrX 160362086 160362210 -16611930 - Tigger2 DNA MER2_type 0 2718 2564 * 764 203 18 55 chrX 160362209 160362426 -16611714 - Tigger2 DNA MER2_type -2508 210 2 696 285 112 19 chrX 160362975 160363242 -16610898 - MLT1E LTR MaLR -11 582 291 731 136 32 16 chrX 160363738 160363863 -16610277 + FLAM_A SINE Alu 16 142 0 941 260 3 10 chrX 160364144 160364448 -16609692 + AluJo SINE Alu 1 302 0 219 69 0 0 chrX 160364865 160364894 -16609246 + (GA)n Simple_repeat Simple_repeat 1 29 0 186 357 50 21 chrX 160364928 160365068 -16609072 + MIR SINE MIR 48 191 -71 506 132 0 0 chrX 160365472 160365548 -16608592 + AluJ/FLAM SINE Alu 1 76 -236 2509 112 11 11 chrX 160365548 160365922 -16608218 + THE1C LTR MaLR 2 375 0 968 163 0 0 chrX 160365926 160366073 -16608067 + FRAM SINE Alu 27 173 -3 22 35 0 0 chrX 160366896 160366925 -16607215 + AT_rich Low_complexity Low_complexity 1 29 0 239 214 48 29 chrX 160367524 160367627 -16606513 + (CATATA)n Simple_repeat Simple_repeat 6 110 0 184 239 0 22 chrX 160367863 160367955 -16606185 + (TATATG)n Simple_repeat Simple_repeat 3 92 0 1680 179 7 0 chrX 160369418 160369697 -16604443 + AluJo SINE Alu 1 281 -31 245 29 0 29 chrX 160369701 160369736 -16604404 + (TAA)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 160370259 160370288 -16603852 + AT_rich Low_complexity Low_complexity 1 29 0 1716 155 52 0 chrX 160370288 160370559 -16603581 - AluJo SINE Alu -27 285 1 2180 110 0 0 chrX 160371191 160371492 -16602648 - AluSg SINE Alu -9 301 1 231 114 0 0 chrX 160371665 160371700 -16602440 + (GA)n Simple_repeat Simple_repeat 2 36 0 2690 97 20 5 chrX 160372071 160372475 -16601665 - L1PA13 LINE L1 0 6163 5754 2247 243 61 27 chrX 160372912 160373062 -16601078 + MER82 DNA MER2_type 7 150 -503 2137 129 0 7 chrX 160373062 160373365 -16600775 - AluSx SINE Alu -11 301 1 2247 243 61 27 chrX 160373365 160373839 -16600301 + MER82 DNA MER2_type 150 652 -1 1712 186 7 0 chrX 160373894 160374174 -16599966 - AluJo SINE Alu -30 282 1 214 299 0 15 chrX 160374995 160375062 -16599078 + CT-rich Low_complexity Low_complexity 2 67 0 191 311 54 14 chrX 160375344 160375418 -16598722 - MIR SINE MIR -32 230 154 2106 149 19 21 chrX 160375512 160375888 -16598252 - THE1C LTR MaLR 0 375 1 1220 150 0 0 chrX 160376461 160376641 -16597499 + AluJo SINE Alu 126 305 -7 26 30 0 0 chrX 160376791 160376824 -16597316 + AT_rich Low_complexity Low_complexity 1 33 0 2365 84 3 0 chrX 160377173 160377472 -16596668 - AluY SINE Alu -10 301 2 215 289 135 19 chrX 160378051 160378155 -16595985 - MIR SINE MIR -62 200 85 429 179 0 0 chrX 160378375 160378498 -16595642 + CT-rich Low_complexity Low_complexity 1 123 0 1205 106 6 0 chrX 160379235 160379396 -16594744 + AluSx SINE Alu 1 162 -150 1304 195 33 107 chrX 160379417 160379635 -16594505 + MLT1B LTR MaLR 1 175 -215 1689 196 0 22 chrX 160379635 160379952 -16594188 + AluJb SINE Alu 3 312 0 1304 195 33 107 chrX 160379952 160380154 -16593986 + MLT1B LTR MaLR 175 390 0 2148 121 13 66 chrX 160380497 160380893 -16593247 + THE1C LTR MaLR 1 375 0 227 167 19 19 chrX 160382219 160382273 -16591867 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 263 104 45 15 chrX 160382316 160382383 -16591757 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 311 218 20 20 chrX 160382399 160382500 -16591640 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 213 218 0 0 chrX 160382533 160382611 -16591529 + (TA)n Simple_repeat Simple_repeat 1 78 0 2218 100 0 13 chrX 160382726 160383036 -16591104 - AluSg SINE Alu 0 310 5 1636 177 0 7 chrX 160383403 160383680 -16590460 + AluJo SINE Alu 1 275 -37 2308 94 0 0 chrX 160384102 160384401 -16589739 + AluY SINE Alu 1 299 -12 1543 200 0 4 chrX 160386706 160387017 -16587123 + AluJo SINE Alu 11 320 0 875 189 4 103 chrX 160387501 160387700 -16586440 + MER20 DNA MER1_type 1 173 -46 1669 184 3 48 chrX 160387700 160387909 -16586231 + L1PA16 LINE L1 5815 6003 -163 210 37 0 0 chrX 160387909 160387936 -16586204 + (CTAAA)n Simple_repeat Simple_repeat 3 29 0 1669 184 3 48 chrX 160387936 160388084 -16586056 + L1PA16 LINE L1 6003 6156 -10 875 189 4 103 chrX 160388084 160388127 -16586013 + MER20 DNA MER1_type 173 219 0 1200 116 0 12 chrX 160388647 160388819 -16585321 + FRAM SINE Alu 1 169 -7 24 0 0 0 chrX 160388931 160388955 -16585185 + AT_rich Low_complexity Low_complexity 1 24 0 3134 136 120 17 chrX 160389075 160389665 -16584475 - MER39B LTR ERV1 -2 651 1 477 159 0 6 chrX 160390651 160390758 -16583382 - AluJ/FRAM SINE Alu -35 277 105 335 200 140 20 chrX 160390766 160390866 -16583274 + MER58B DNA MER1_type 196 307 -34 2458 153 113 31 chrX 160390988 160391538 -16582602 - LTR49 LTR ERV1 0 595 1 4002 34 32 0 chrX 160391791 160392265 -16581875 - LTR2B LTR ERV1 0 490 2 2726 163 33 13 chrX 160392321 160392843 -16581297 + L1MA5 LINE L1 5511 6042 -258 23 0 0 0 chrX 160392947 160392970 -16581170 + AT_rich Low_complexity Low_complexity 1 23 0 854 128 0 23 chrX 160393227 160393360 -16580780 - FLAM_C SINE Alu -1 132 3 322 328 49 45 chrX 160393377 160393621 -16580519 + HERVL LTR ERVL 2314 2558 -3096 1300 244 0 25 chrX 160393824 160394144 -16579996 + AluJo SINE Alu 1 312 0 26 0 0 0 chrX 160394619 160394645 -16579495 + AT_rich Low_complexity Low_complexity 1 26 0 1037 122 12 0 chrX 160394645 160394809 -16579331 - L1PA14 LINE L1 -3 6158 5993 364 256 51 7 chrX 160396273 160396410 -16577730 - L1ME2 LINE L1 -17 6147 6005 888 285 106 7 chrX 160396466 160396955 -16577185 - L1ME2 LINE L1 -247 5917 5347 1789 171 38 43 chrX 160396962 160397307 -16576833 - MER7A DNA MER2_type -5 341 1 1066 293 50 33 chrX 160397310 160397985 -16576155 - L1ME2 LINE L1 -987 5159 4473 243 0 0 0 chrX 160397998 160398025 -16576115 + (TG)n Simple_repeat Simple_repeat 2 28 0 5843 60 11 4 chrX 160398030 160398781 -16575359 - MER4E LTR ERV1 -10 756 1 686 272 54 14 chrX 160398876 160399152 -16574988 - L1ME2 LINE L1 -1792 4354 4068 26 74 0 0 chrX 160399172 160399226 -16574914 + AT_rich Low_complexity Low_complexity 1 54 0 270 232 28 39 chrX 160400116 160400297 -16573843 + (TA)n Simple_repeat Simple_repeat 2 180 0 195 170 0 0 chrX 160400391 160400438 -16573702 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chrX 160400449 160400479 -16573661 + AT_rich Low_complexity Low_complexity 1 30 0 428 85 0 0 chrX 160400479 160400538 -16573602 + AluSp/q SINE Alu 235 293 -20 339 277 28 11 chrX 160400545 160400722 -16573418 + (TA)n Simple_repeat Simple_repeat 1 180 0 557 266 62 29 chrX 160401083 160401357 -16572783 - L1ME1 LINE L1 -74 6092 5810 4591 194 20 41 chrX 160401370 160402585 -16571555 - L1MC2 LINE L1 -26 6318 5127 676 309 77 16 chrX 160402759 160403332 -16570808 - L1MC2 LINE L1 -1646 4500 3893 1964 161 3 54 chrX 160403358 160403748 -16570392 - MLT1B LTR MaLR -19 371 2 1928 74 0 8 chrX 160403879 160404123 -16570017 + AluY SINE Alu 59 300 -11 455 72 24 36 chrX 160404200 160404283 -16569857 + (TTATA)n Simple_repeat Simple_repeat 1 82 0 3451 128 2 2 chrX 160404292 160404829 -16569311 + L1PA13 LINE L1 5624 6160 -3 513 0 0 0 chrX 160405820 160405877 -16568263 + (CA)n Simple_repeat Simple_repeat 2 58 0 2317 88 16 0 chrX 160406544 160406897 -16567243 - AluSx SINE Alu 0 358 1 560 287 76 41 chrX 160407459 160407889 -16566251 - L1ME2 LINE L1 -8 6158 5705 291 266 65 16 chrX 160407890 160408014 -16566126 - L2 LINE L2 -1505 1809 1680 1748 119 76 4 chrX 160408139 160408416 -16565724 + AluSx SINE Alu 1 297 -15 290 146 0 0 chrX 160408447 160408495 -16565645 - MLT2B1 LTR ERVL 0 397 350 185 230 7 37 chrX 160408530 160408665 -16565475 + (TA)n Simple_repeat Simple_repeat 2 132 0 402 245 0 0 chrX 160408771 160408922 -16565218 + (TA)n Simple_repeat Simple_repeat 1 151 0 915 278 65 13 chrX 160408927 160409236 -16564904 - MLT2B1 LTR ERVL -185 335 11 1470 175 0 8 chrX 160409371 160409622 -16564518 + AluJb SINE Alu 51 299 -13 1851 154 31 7 chrX 160409967 160410260 -16563880 - AluSx SINE Alu 0 312 13 2769 151 15 74 chrX 160411439 160412087 -16562053 - MER4B LTR ERV1 0 610 1 1958 147 3 0 chrX 160412311 160412604 -16561536 - AluSx SINE Alu -13 299 6 1867 209 114 23 chrX 160412873 160413044 -16561096 + L1MC3 LINE L1 7158 7312 -473 3351 133 34 0 chrX 160413044 160413580 -16560560 + MER41C LTR ERV1 1 554 0 1867 209 114 23 chrX 160413580 160413968 -16560172 + L1MC3 LINE L1 7312 7768 -17 1397 180 4 31 chrX 160414004 160414291 -16559849 + AluJo SINE Alu 30 309 0 21 0 0 0 chrX 160415945 160415966 -16558174 + AT_rich Low_complexity Low_complexity 1 21 0 257 323 160 30 chrX 160416302 160416957 -16557183 + L2 LINE L2 2458 3268 -45 2528 182 43 2 chrX 160417105 160417622 -16556518 + L1PB4 LINE L1 5611 6148 -8 1684 309 68 9 chrX 160417879 160418855 -16555285 - L1MEc LINE L1 -2964 3251 2257 1103 288 85 32 chrX 160418864 160419392 -16554748 - L1ME1 LINE L1 -5 6161 5606 269 166 58 13 chrX 160419552 160419773 -16554367 + (TCTA)n Simple_repeat Simple_repeat 1 267 -12 267 31 0 0 chrX 160419773 160419805 -16554335 + (TC)n Simple_repeat Simple_repeat 2 33 0 269 166 58 13 chrX 160419805 160419819 -16554321 + (TCTA)n Simple_repeat Simple_repeat 267 279 0 1746 165 11 0 chrX 160421239 160421518 -16552622 + AluJo SINE Alu 1 282 -30 2159 99 123 0 chrX 160421725 160422057 -16552083 - THE1C LTR MaLR -2 373 1 2573 136 24 31 chrX 160423324 160423661 -16550479 + L1PB3 LINE L1 5694 6029 -125 1886 141 41 0 chrX 160423661 160423952 -16550188 + AluSx SINE Alu 1 303 -9 2573 136 24 31 chrX 160423952 160424069 -16550071 + L1PB3 LINE L1 6029 6145 -9 981 77 0 0 chrX 160424655 160424785 -16549355 - MER41A LTR ERV1 -322 232 103 189 267 0 0 chrX 160424785 160424901 -16549239 + (TA)n Simple_repeat Simple_repeat 1 116 0 198 0 0 0 chrX 160425865 160425887 -16548253 + (TA)n Simple_repeat Simple_repeat 2 23 0 1309 102 49 4 chrX 160426024 160426250 -16547890 + L1MA8 LINE L1 6051 6286 -5 286 292 23 1 chrX 160426266 160426361 -16547779 + MLT1G LTR MaLR 46 185 -410 304 287 85 8 chrX 160426390 160426519 -16547621 + HAL1b LINE L1 606 744 -604 410 233 58 112 chrX 160426534 160426813 -16547327 + MLT1G LTR MaLR 156 382 -150 327 49 0 0 chrX 160427035 160427076 -16547064 + (CA)n Simple_repeat Simple_repeat 1 41 0 252 0 0 0 chrX 160428058 160428086 -16546054 + (CA)n Simple_repeat Simple_repeat 2 29 0 1917 173 0 0 chrX 160429061 160429400 -16544740 + AluJb SINE Alu 1 339 0 1046 70 5 47 chrX 160429417 160429632 -16544508 + (GAAA)n Simple_repeat Simple_repeat 1 205 0 2809 185 4 4 chrX 160429636 160430111 -16544029 - MER66B LTR ERV1 -10 476 2 211 184 41 0 chrX 160431005 160431054 -16543086 + A-rich Low_complexity Low_complexity 3 53 0 198 0 0 0 chrX 160432370 160432392 -16541748 + (A)n Simple_repeat Simple_repeat 1 22 0 1596 119 0 8 chrX 160432398 160432642 -16541498 - L1P LINE L1 -1407 4739 4498 923 166 4 0 chrX 160432689 160433162 -16540978 + (CAT)n Simple_repeat Simple_repeat 1 475 0 21 0 0 0 chrX 160434258 160434279 -16539861 + AT_rich Low_complexity Low_complexity 1 21 0 241 262 18 16 chrX 160434625 160434703 -16539437 + MIR SINE MIR 69 151 -57 1299 170 0 10 chrX 160435236 160435442 -16538698 - AluJo SINE Alu -26 286 83 25 65 0 0 chrX 160435469 160435515 -16538625 + AT_rich Low_complexity Low_complexity 1 46 0 340 255 108 10 chrX 160436714 160436816 -16537324 - MER5A DNA MER1_type 0 189 78 970 230 111 41 chrX 160436842 160437186 -16536954 - L1MA7 LINE L1 0 6291 5924 366 23 0 0 chrX 160438180 160438223 -16535917 + (CA)n Simple_repeat Simple_repeat 2 44 0 1961 171 42 0 chrX 160438520 160438877 -16535263 - MLT1B LTR MaLR -2 388 17 379 125 0 0 chrX 160439001 160439057 -16535083 + MLT1B LTR MaLR 335 390 0 369 62 0 0 chrX 160439188 160439236 -16534904 + (CA)n Simple_repeat Simple_repeat 2 49 0 2363 87 39 0 chrX 160439236 160439593 -16534547 + L1PA13 LINE L1 5793 6163 0 2580 79 14 3 chrX 160440258 160440613 -16533527 - L1PA13 LINE L1 -2 6161 5803 504 153 0 1 chrX 160440613 160440699 -16533441 - L1PA12 LINE L1 -295 5873 5789 1936 132 7 10 chrX 160440871 160441160 -16532980 + AluSx SINE Alu 7 294 -18 276 154 0 0 chrX 160441600 160441652 -16532488 + A-rich Low_complexity Low_complexity 1 52 0 351 113 0 0 chrX 160442265 160442327 -16531813 + L1PA15 LINE L1 6101 6162 -3 222 254 15 15 chrX 160443102 160443169 -16530971 + (TATG)n Simple_repeat Simple_repeat 4 70 0 2037 155 6 40 chrX 160443277 160443371 -16530769 + MLT1B LTR MaLR 1 97 -299 1614 88 19 0 chrX 160443371 160443586 -16530554 - AluSp SINE Alu -9 304 86 2037 155 6 40 chrX 160443586 160443897 -16530243 + MLT1B LTR MaLR 97 396 0 1319 161 13 0 chrX 160443897 160444127 -16530013 + MLT1B LTR MaLR 158 390 0 24 0 0 0 chrX 160444758 160444782 -16529358 + AT_rich Low_complexity Low_complexity 1 24 0 2818 216 40 10 chrX 160445025 160445698 -16528442 - L1MB4 LINE L1 -2 6178 5486 24 32 0 0 chrX 160445700 160445731 -16528409 + AT_rich Low_complexity Low_complexity 1 31 0 753 188 15 0 chrX 160445735 160445868 -16528272 - AluJo SINE Alu -177 135 1 2148 173 4 69 chrX 160446048 160446120 -16528020 - MSTC LTR MaLR -5 423 348 8828 25 0 0 chrX 160446120 160447929 -16526211 - L1PA2 LINE L1 -2 6153 4345 2148 173 4 69 chrX 160447929 160448253 -16525887 - MSTC LTR MaLR -80 348 57 2022 142 7 0 chrX 160448253 160448562 -16525578 - AluSx SINE Alu -1 311 1 2148 173 4 69 chrX 160448562 160448616 -16525524 - MSTC LTR MaLR -371 57 1 299 175 0 38 chrX 160448829 160448909 -16525231 - MLT2B1 LTR ERVL -3 517 441 1545 178 36 11 chrX 160448944 160449225 -16524915 + AluJb SINE Alu 1 288 -24 1595 187 15 0 chrX 160449286 160449559 -16524581 - MLT2B3 LTR ERVL -46 508 232 225 132 0 0 chrX 160449574 160449612 -16524528 + (GA)n Simple_repeat Simple_repeat 2 39 0 1127 204 9 0 chrX 160449633 160449844 -16524296 - MLT2D LTR ERVL -340 213 1 297 305 0 0 chrX 160450810 160450892 -16523248 + L2 LINE L2 2948 3029 -284 183 333 27 0 chrX 160451014 160451089 -16523051 + L2 LINE L2 3233 3309 -4 1230 182 0 5 chrX 160451194 160451414 -16522726 - Tigger3(Golem) DNA MER2_type -40 2989 2771 598 239 45 0 chrX 160451410 160451544 -16522596 - Tigger3(Golem) DNA MER2_type -2886 143 4 * 297 280 30 0 chrX 160452557 160452657 -16521483 + GA-rich Low_complexity Low_complexity 6 108 0 3119 122 2 0 chrX 160452862 160453345 -16520795 + L1MA2 LINE L1 5821 6304 0 285 109 0 0 chrX 160453447 160453493 -16520647 + (CA)n Simple_repeat Simple_repeat 2 47 0 1149 260 99 24 chrX 160454045 160454579 -16519561 + L1ME2 LINE L1 5581 6154 -10 1754 125 49 15 chrX 160454952 160455216 -16518924 - Charlie3 DNA MER1_type -2437 273 1 3955 148 20 18 chrX 160455219 160455928 -16518212 - L1PB4 LINE L1 -188 5968 5259 24 0 0 0 chrX 160456419 160456443 -16517697 + AT_rich Low_complexity Low_complexity 1 24 0 31 68 0 0 chrX 160456589 160456648 -16517492 + AT_rich Low_complexity Low_complexity 1 59 0 429 255 164 0 chrX 160456772 160456980 -16517160 - HAL1 LINE L1 -982 1525 1284 1944 166 0 0 chrX 160457011 160457306 -16516834 - AluJb SINE Alu -17 295 1 22 56 0 0 chrX 160457694 160457730 -16516410 + AT_rich Low_complexity Low_complexity 1 36 0 1646 176 3 65 chrX 160458005 160458328 -16515812 - AluJb SINE Alu -9 303 1 22 0 0 0 chrX 160459070 160459092 -16515048 + AT_rich Low_complexity Low_complexity 1 22 0 300 27 0 0 chrX 160459548 160459585 -16514555 + (TG)n Simple_repeat Simple_repeat 2 38 0 2028 161 9 0 chrX 160459585 160459933 -16514207 - L1PB3 LINE L1 -3 6151 5801 1008 234 6 23 chrX 160459939 160460292 -16513848 - LTR2 LTR ERV1 0 449 3 189 147 0 0 chrX 160460376 160460410 -16513730 + (CA)n Simple_repeat Simple_repeat 2 35 0 914 263 20 50 chrX 160460410 160460710 -16513430 + MLT1A2 LTR MaLR 34 324 -50 668 130 0 10 chrX 160460711 160460811 -16513329 + MER4A LTR ERV1 1 99 -565 1666 133 55 11 chrX 160460811 160461141 -16512999 + MER4A LTR ERV1 262 664 0 4597 107 1 1 chrX 160461722 160462384 -16511756 - L1PA11 LINE L1 0 6174 5513 264 30 0 0 chrX 160462493 160462526 -16511614 + (TG)n Simple_repeat Simple_repeat 2 34 0 252 0 0 0 chrX 160462594 160462622 -16511518 + (GA)n Simple_repeat Simple_repeat 1 28 0 25 83 0 0 chrX 160463535 160463595 -16510545 + AT_rich Low_complexity Low_complexity 1 60 0 3842 100 59 7 chrX 160465206 160465778 -16508362 - MER4B LTR ERV1 -1 609 8 295 156 44 28 chrX 160465779 160466059 -16508081 + (TA)n Simple_repeat Simple_repeat 1 284 0 291 130 38 60 chrX 160466125 160466309 -16507831 + (TA)n Simple_repeat Simple_repeat 1 180 0 25 51 0 0 chrX 160466948 160466987 -16507153 + AT_rich Low_complexity Low_complexity 1 39 0 2237 110 0 0 chrX 160467313 160467614 -16506526 + AluSg SINE Alu 1 301 -9 1811 181 0 3 chrX 160467623 160467927 -16506213 + AluJb SINE Alu 1 303 -9 486 139 13 0 chrX 160468218 160468297 -16505843 - MADE1 DNA Mariner 0 80 1 45 79 0 0 chrX 160468300 160468401 -16505739 + AT_rich Low_complexity Low_complexity 1 101 0 4027 184 27 27 chrX 160468958 160469036 -16505104 - MER6 DNA MER2_type -4 861 784 1660 164 65 7 chrX 160469036 160469329 -16504811 + AluJb SINE Alu 1 310 -2 4027 184 27 27 chrX 160469329 160470111 -16504029 - MER6 DNA MER2_type -80 785 1 2115 114 44 33 chrX 160470152 160470512 -16503628 + THE1B LTR MaLR 1 364 0 336 347 14 56 chrX 160470715 160471000 -16503140 - MLT1I LTR MaLR -80 329 57 213 217 22 0 chrX 160472111 160472157 -16501983 + (TG)n Simple_repeat Simple_repeat 2 48 0 1474 167 35 32 chrX 160473353 160473635 -16500505 + AluJo SINE Alu 1 283 -29 338 208 13 0 chrX 160473896 160473973 -16500167 + MLT1A1 LTR MaLR 287 364 -1 3221 130 43 6 chrX 160474592 160475077 -16499063 + MER1A DNA MER1_type 1 503 -26 380 191 12 0 chrX 160475218 160475302 -16498838 - MLT1D LTR MaLR -2 503 419 260 130 152 0 chrX 160475303 160475349 -16498791 + L1MA9 LINE L1 6099 6151 -161 423 38 0 0 chrX 160475349 160475402 -16498738 + (CA)n Simple_repeat Simple_repeat 1 53 0 231 196 43 0 chrX 160475402 160475448 -16498692 - MLT1D LTR MaLR -80 425 378 1222 172 82 26 chrX 160475461 160475573 -16498567 + L1MA9 LINE L1 5988 6092 -220 4064 114 7 3 chrX 160475573 160476171 -16497969 - LTR43 LTR ERV1 0 602 3 1222 172 82 26 chrX 160476171 160476221 -16497919 + L1MA9 LINE L1 6092 6138 -174 213 39 0 0 chrX 160476221 160476247 -16497893 + (CA)n Simple_repeat Simple_repeat 1 26 0 1222 172 82 26 chrX 160476247 160476350 -16497790 + L1MA9 LINE L1 6138 6269 -43 2081 174 49 29 chrX 160476351 160476877 -16497263 + MLT2A2 LTR ERVL 1 554 0 1777 195 11 3 chrX 160477118 160477477 -16496663 + MLT1A1 LTR MaLR 4 365 0 3132 165 44 42 chrX 160478122 160478340 -16495800 - LTR29 LTR ERV1 0 622 406 2181 138 33 25 chrX 160478340 160478701 -16495439 - THE1B LTR MaLR 0 364 1 3132 165 44 42 chrX 160478701 160479101 -16495039 - LTR29 LTR ERV1 -216 406 3 2144 112 26 0 chrX 160479207 160479512 -16494628 + AluSq SINE Alu 1 313 0 1651 166 48 45 chrX 160480468 160480842 -16493298 - THE1C LTR MaLR 0 375 1 745 141 7 0 chrX 160481206 160481341 -16492799 - L1MA7 LINE L1 0 6291 6156 252 265 0 0 chrX 160481521 160481570 -16492570 - MER5A DNA MER1_type -140 49 1 21 57 0 0 chrX 160482377 160482412 -16491728 + AT_rich Low_complexity Low_complexity 1 35 0 853 172 6 18 chrX 160482812 160482981 -16491159 - Tigger5 DNA MER2_type -84 2239 2073 744 311 42 18 chrX 160483243 160483577 -16490563 - LTR16C LTR ERVL -1 490 149 2229 119 0 0 chrX 160483631 160483941 -16490199 + AluSx SINE Alu 3 312 0 1315 185 105 25 chrX 160484023 160484299 -16489841 + AluJo SINE Alu 3 300 -12 567 161 33 33 chrX 160484299 160484479 -16489661 + GA-rich Low_complexity Low_complexity 1 180 0 243 179 0 0 chrX 160484482 160484521 -16489619 + polypurine Low_complexity Low_complexity 1 39 0 301 254 32 21 chrX 160484834 160484974 -16489166 + L1M3 LINE L1 5551 5694 -474 386 311 27 14 chrX 160485428 160485576 -16488564 - L2 LINE L2 -8 3305 3156 809 104 7 0 chrX 160485587 160485722 -16488418 + (TCTA)n Simple_repeat Simple_repeat 1 136 0 410 173 19 25 chrX 160485804 160485966 -16488174 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 367 196 14 0 chrX 160485985 160486123 -16488017 + (TCTA)n Simple_repeat Simple_repeat 2 141 0 233 284 0 14 chrX 160486141 160486215 -16487925 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 21 0 0 0 chrX 160486859 160486880 -16487260 + AT_rich Low_complexity Low_complexity 1 21 0 327 300 87 13 chrX 160487949 160488099 -16486041 + MIR SINE MIR 92 252 -10 2312 91 0 3 chrX 160488185 160488482 -16485658 + AluSc SINE Alu 1 296 -13 1806 143 25 3 chrX 160488490 160488776 -16485364 + AluSx SINE Alu 1 292 -20 183 100 0 0 chrX 160489083 160489113 -16485027 + (CA)n Simple_repeat Simple_repeat 2 31 0 2044 155 120 5 chrX 160489113 160489487 -16484653 + MSTA LTR MaLR 1 417 -11 300 275 36 54 chrX 160489523 160489912 -16484228 + L1M4 LINE L1 3059 3440 -2706 246 217 0 0 chrX 160490088 160490134 -16484006 - L2 LINE L2 -254 3059 3014 3015 179 20 9 chrX 160490201 160490748 -16483392 - MER41D LTR ERV1 -2 555 3 1846 103 43 0 chrX 160491311 160491592 -16482548 - L1MA2 LINE L1 0 6304 6012 1059 80 22 0 chrX 160491608 160491745 -16482395 - AluY SINE Alu -14 297 158 1191 41 0 0 chrX 160492923 160493069 -16481071 + L1PA5 LINE L1 5995 6140 -14 2339 103 0 3 chrX 160493766 160494076 -16480064 - AluSq SINE Alu -4 309 1 276 100 0 0 chrX 160494186 160494226 -16479914 + (TA)n Simple_repeat Simple_repeat 1 40 0 823 171 0 0 chrX 160495274 160495414 -16478726 + L1P5 LINE L1 5484 5623 -533 206 233 0 33 chrX 160496668 160496728 -16477412 - MIR SINE MIR -71 191 134 2095 137 0 3 chrX 160496774 160497080 -16477060 + AluSx SINE Alu 1 305 -7 285 200 93 0 chrX 160497496 160497571 -16476569 + MER89 LTR ERV1 3 84 -475 1470 231 31 6 chrX 160497618 160497969 -16476171 + MER89 LTR ERV1 200 559 0 1871 145 19 49 chrX 160498411 160498776 -16475364 - THE1C LTR MaLR -21 354 1 1360 212 61 7 chrX 160499008 160499301 -16474839 + AluJo SINE Alu 1 309 -3 305 354 95 18 chrX 160499901 160500237 -16473903 - L1M4 LINE L1 -2437 3709 3348 373 166 31 37 chrX 160501201 160501364 -16472776 + (TCTA)n Simple_repeat Simple_repeat 4 165 0 765 134 15 30 chrX 160501411 160501743 -16472397 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 2584 139 83 122 chrX 160502925 160503513 -16470627 + LTR25 LTR ERV1 14 601 -193 2261 96 0 3 chrX 160503513 160503804 -16470336 + AluSg SINE Alu 1 290 -20 2584 139 83 122 chrX 160503804 160503991 -16470149 + LTR25 LTR ERV1 601 794 0 2866 98 48 18 chrX 160505185 160505625 -16468515 - MLT2A2 LTR ERVL 0 453 1 191 32 0 32 chrX 160506042 160506064 -16468076 + (GAAA)n Simple_repeat Simple_repeat 2 24 -7 2438 84 0 0 chrX 160506064 160506375 -16467765 + AluY SINE Alu 1 311 0 191 32 0 32 chrX 160506375 160506383 -16467757 + (GAAA)n Simple_repeat Simple_repeat 24 31 0 180 200 0 0 chrX 160507126 160507171 -16466969 + (CA)n Simple_repeat Simple_repeat 2 46 0 29 28 0 0 chrX 160507602 160507638 -16466502 + AT_rich Low_complexity Low_complexity 1 36 0 917 132 15 88 chrX 160508843 160509048 -16465092 + L1MA7 LINE L1 5844 6033 -258 1197 183 40 15 chrX 160509339 160509612 -16464528 + L1MA7 LINE L1 6010 6289 -2 1559 147 60 4 chrX 160509685 160509936 -16464204 + AluSq SINE Alu 1 265 -48 202 266 223 11 chrX 160510402 160510496 -16463644 + MIR SINE MIR 132 245 -17 2224 79 4 0 chrX 160512879 160513157 -16460983 + AluSx SINE Alu 19 297 -15 189 94 0 0 chrX 160513165 160513197 -16460943 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 272 262 179 29 chrX 160513197 160513537 -16460603 - L1ME LINE L1 -464 5706 5328 649 244 0 0 chrX 160513784 160513903 -16460237 + FLAM_A SINE Alu 1 119 -14 23 33 0 0 chrX 160513903 160513933 -16460207 + AT_rich Low_complexity Low_complexity 1 30 0 495 264 25 30 chrX 160513936 160514133 -16460007 + MER3 DNA MER1_type 4 199 -10 639 131 0 10 chrX 160514403 160514502 -16459638 + MER4A LTR ERV1 1 98 -566 1774 140 6 35 chrX 160514502 160514858 -16459282 + MER4A LTR ERV1 261 664 0 282 392 50 14 chrX 160515839 160516061 -16458079 - MLT1K LTR MaLR -278 310 81 2450 150 39 5 chrX 160516388 160516802 -16457338 - MSTA LTR MaLR 0 428 1 260 258 199 34 chrX 160517045 160517312 -16456828 - L1ME LINE L1 -511 5651 5341 2078 118 7 0 chrX 160517573 160517861 -16456279 - AluSx SINE Alu -2 310 21 22 35 0 0 chrX 160518363 160518392 -16455748 + AT_rich Low_complexity Low_complexity 1 29 0 323 102 95 15 chrX 160518405 160518542 -16455598 + (TCTA)n Simple_repeat Simple_repeat 3 150 0 27 29 0 0 chrX 160519368 160519402 -16454738 + AT_rich Low_complexity Low_complexity 1 34 0 2198 120 3 0 chrX 160520136 160520435 -16453705 - AluSx SINE Alu -12 300 1 854 217 56 20 chrX 160520514 160520712 -16453428 - MER20 DNA MER1_type -5 214 10 351 185 28 93 chrX 160520744 160520791 -16453349 - MER49 LTR ERV1 0 923 875 2229 128 0 0 chrX 160520791 160521103 -16453037 - AluSx SINE Alu 0 312 1 351 185 28 93 chrX 160521103 160521163 -16452977 - MER49 LTR ERV1 -48 875 823 782 183 6 0 chrX 160523171 160523505 -16450635 + (ATG)n Simple_repeat Simple_repeat 1 336 0 1268 110 0 0 chrX 160523684 160523857 -16450283 + AluSq SINE Alu 140 312 -1 24 0 0 0 chrX 160525118 160525142 -16448998 + AT_rich Low_complexity Low_complexity 1 24 0 43 47 0 0 chrX 160525157 160525221 -16448919 + AT_rich Low_complexity Low_complexity 1 64 0 197 298 40 73 chrX 160525665 160525789 -16448351 - MIR SINE MIR 0 262 143 1610 177 3 17 chrX 160525823 160526117 -16448023 + AluJo SINE Alu 1 290 -22 24 0 0 0 chrX 160526128 160526152 -16447988 + AT_rich Low_complexity Low_complexity 1 24 0 833 255 145 58 chrX 160526174 160526712 -16447428 - MER34C LTR ERV1 0 585 1 455 214 17 34 chrX 160527035 160527213 -16446927 + (TCTA)n Simple_repeat Simple_repeat 1 175 0 368 288 72 46 chrX 160527300 160527607 -16446533 - L1ME2 LINE L1 -1 6163 5844 2068 132 0 13 chrX 160527607 160527911 -16446229 - AluSx SINE Alu -12 300 1 368 288 72 46 chrX 160527911 160528049 -16446091 - L1ME2 LINE L1 -320 5844 5711 2132 204 49 20 chrX 160528335 160528785 -16445355 - MLT1D LTR MaLR 0 505 69 2123 125 53 14 chrX 160528785 160529146 -16444994 - THE1C LTR MaLR 0 375 1 2132 204 49 20 chrX 160529146 160529158 -16444982 - MLT1D LTR MaLR -436 69 59 216 67 0 0 chrX 160529158 160529188 -16444952 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2132 204 49 20 chrX 160529188 160529215 -16444925 - MLT1D LTR MaLR -446 59 1 499 123 41 0 chrX 160529403 160529525 -16444615 + (TA)n Simple_repeat Simple_repeat 2 128 0 1884 165 3 0 chrX 160529525 160529816 -16444324 - AluJb SINE Alu -20 292 1 396 0 0 0 chrX 160530328 160530372 -16443768 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 948 179 0 0 chrX 160531455 160531751 -16442389 + (TGGA)n Simple_repeat Simple_repeat 1 296 0 257 250 22 43 chrX 160532512 160532604 -16441536 + L1ME LINE L1 5798 5887 -283 2478 153 24 5 chrX 160532665 160533083 -16441057 - MSTB LTR MaLR 0 426 1 27 81 0 0 chrX 160533113 160533175 -16440965 + AT_rich Low_complexity Low_complexity 1 62 0 982 195 5 15 chrX 160533294 160533741 -16440399 + (TGGA)n Simple_repeat Simple_repeat 1 442 0 1523 254 160 78 chrX 160534719 160535281 -16438859 + MLT1E3 LTR MaLR 39 616 -8 23 54 0 0 chrX 160535529 160535566 -16438574 + AT_rich Low_complexity Low_complexity 1 37 0 3422 101 4 0 chrX 160537167 160537651 -16436489 + L1PA13 LINE L1 5659 6144 -19 21 0 0 0 chrX 160537655 160537676 -16436464 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chrX 160538956 160538987 -16435153 + AT_rich Low_complexity Low_complexity 1 31 0 197 328 31 0 chrX 160539078 160539142 -16434998 - L2 LINE L2 -2 3270 3205 1304 249 16 26 chrX 160539548 160539926 -16434214 - MLT1A2 LTR MaLR 0 374 1 975 115 0 0 chrX 160540038 160540186 -16433954 + (TA)n Simple_repeat Simple_repeat 1 148 0 2142 173 39 14 chrX 160540360 160540794 -16433346 - MER65A LTR ERV1 0 445 1 5646 177 21 8 chrX 160541284 160543281 -16430859 - L1MA5 LINE L1 0 6300 4277 1363 132 0 0 chrX 160543284 160543488 -16430652 - AluSg/x SINE Alu -4 306 103 1030 195 11 46 chrX 160543499 160543761 -16430379 - L1MA5 LINE L1 -1871 4275 4023 419 52 17 0 chrX 160544030 160544088 -16430052 + (GAAA)n Simple_repeat Simple_repeat 2 60 0 2126 183 11 3 chrX 160544118 160544500 -16429640 + MLT1B LTR MaLR 1 385 -5 3348 235 25 43 chrX 160544939 160545859 -16428281 - L1MD1 LINE L1 -1 6241 5337 2304 108 0 3 chrX 160545859 160546173 -16427967 - AluSq SINE Alu 0 313 1 3348 235 25 43 chrX 160546173 160546321 -16427819 - L1MD1 LINE L1 -905 5337 5188 23 68 0 0 chrX 160546896 160546940 -16427200 + AT_rich Low_complexity Low_complexity 1 44 0 2112 128 30 44 chrX 160548504 160548871 -16425269 + THE1B LTR MaLR 1 362 -2 2026 162 7 74 chrX 160549066 160549476 -16424664 - L1MA9 LINE L1 -3 6309 5932 2762 79 22 3 chrX 160549476 160549843 -16424297 - THE1C LTR MaLR -1 374 1 2026 162 7 74 chrX 160549843 160549894 -16424246 - L1MA9 LINE L1 -380 5932 5879 2274 108 135 8 chrX 160549904 160550282 -16423858 + MSTA LTR MaLR 1 426 -2 184 150 70 10 chrX 160550993 160551093 -16423047 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 32 0 0 chrX 160551127 160551158 -16422982 + AT_rich Low_complexity Low_complexity 1 31 0 318 240 227 60 chrX 160552473 160552623 -16421517 + MER20 DNA MER1_type 45 219 0 2040 175 65 24 chrX 160552925 160553142 -16420998 - MSTB1 LTR MaLR 0 432 225 1701 194 3 0 chrX 160553142 160553436 -16420704 - AluJb SINE Alu -16 296 2 2040 175 65 24 chrX 160553436 160553630 -16420510 - MSTB1 LTR MaLR -207 225 4 23 86 0 0 chrX 160554508 160554566 -16419574 + AT_rich Low_complexity Low_complexity 1 58 0 1225 186 5 0 chrX 160554757 160554977 -16419163 - AluJb SINE Alu -91 221 1 1812 196 17 3 chrX 160555065 160555423 -16418717 + MLT1A1 LTR MaLR 1 363 -2 585 219 0 6 chrX 160555741 160556085 -16418055 + CT-rich Low_complexity Low_complexity 1 341 0 450 0 0 0 chrX 160556241 160556291 -16417849 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 347 48 0 0 chrX 160556291 160556333 -16417807 - L1PA6 LINE L1 -16 6138 6097 21 0 0 0 chrX 160556922 160556943 -16417197 + AT_rich Low_complexity Low_complexity 1 21 0 1247 163 9 27 chrX 160557113 160557334 -16416806 - AluJo SINE Alu -5 307 91 1204 138 102 18 chrX 160559139 160559364 -16414776 - MSTA LTR MaLR 0 428 185 248 294 46 46 chrX 160559547 160559656 -16414484 + MLT1L LTR MaLR 98 206 -409 * 672 332 114 16 chrX 160559640 160560016 -16414124 + MLT1K LTR MaLR 137 549 -39 889 105 70 58 chrX 160560020 160560191 -16413949 - MSTA LTR MaLR -255 173 1 222 37 0 0 chrX 160561854 160561881 -16412259 + (TTTC)n Simple_repeat Simple_repeat 4 30 0 1385 174 0 82 chrX 160561881 160562175 -16411965 - AluJo SINE Alu -42 270 1 206 329 56 77 chrX 160562328 160562471 -16411669 + MER5A DNA MER1_type 7 146 -43 1072 161 6 0 chrX 160563084 160563246 -16410894 + AluJb SINE Alu 127 289 -23 389 294 7 7 chrX 160564341 160564494 -16409646 + (TA)n Simple_repeat Simple_repeat 1 153 0 28 0 0 0 chrX 160564507 160564535 -16409605 + AT_rich Low_complexity Low_complexity 1 28 0 263 229 42 14 chrX 160564570 160564714 -16409426 + (TA)n Simple_repeat Simple_repeat 2 149 0 200 176 39 0 chrX 160564908 160564959 -16409181 + T-rich Low_complexity Low_complexity 2 54 0 695 211 20 4 chrX 160565633 160566273 -16407867 + GA-rich Low_complexity Low_complexity 1 649 0 246 153 0 0 chrX 160566273 160566332 -16407808 + (CAGG)n Simple_repeat Simple_repeat 2 60 0 2414 65 0 3 chrX 160566641 160566948 -16407192 - AluY SINE Alu -5 306 1 1460 128 4 4 chrX 160567775 160568002 -16406138 - L1PB3 LINE L1 -1 6153 5927 2850 0 0 0 chrX 160568282 160568586 -16405554 + AluYa5 SINE Alu 1 304 -7 231 61 0 0 chrX 160568664 160568697 -16405443 + (CA)n Simple_repeat Simple_repeat 2 34 0 27 0 0 0 chrX 160568804 160568831 -16405309 + AT_rich Low_complexity Low_complexity 1 27 0 512 168 15 22 chrX 160568944 160569081 -16405059 + GA-rich Low_complexity Low_complexity 2 137 0 278 26 26 0 chrX 160569306 160569345 -16404795 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 227 206 29 59 chrX 160569672 160569740 -16404400 + MER34 LTR ERV1 97 162 -380 40 59 0 0 chrX 160572255 160572323 -16401817 + AT_rich Low_complexity Low_complexity 1 68 0 212 171 0 0 chrX 160572586 160572627 -16401513 + (TA)n Simple_repeat Simple_repeat 2 42 0 1500 203 27 14 chrX 160573562 160573857 -16400283 - AluJb SINE Alu -13 299 1 226 152 0 30 chrX 160574547 160574613 -16399527 + (TA)n Simple_repeat Simple_repeat 2 65 0 873 244 4 27 chrX 160576707 160576928 -16397212 + L1ME LINE L1 34 596 -5934 354 300 67 28 chrX 160576909 160577089 -16397051 + L1ME LINE L1 374 560 -5980 * 1212 269 17 38 chrX 160577092 160577570 -16396570 + MLT2B1 LTR ERVL 1 469 -85 857 237 16 63 chrX 160577568 160577972 -16396168 + MLT2B1 LTR ERVL 267 514 -6 * 331 189 0 0 chrX 160577978 160578031 -16396109 + L1ME LINE L1 645 697 -5843 424 320 39 1 chrX 160578135 160578317 -16395823 + L1ME LINE L1 592 1087 -5453 2922 236 128 21 chrX 160578327 160579532 -16394608 + L1ME LINE L1 1202 2535 -4005 900 250 30 0 chrX 160579548 160579784 -16394356 + L1MD2 LINE L1 5707 5949 -410 1649 168 14 28 chrX 160579930 160580246 -16393894 + AluJb SINE Alu 1 312 0 29 28 0 0 chrX 160580393 160580429 -16393711 + AT_rich Low_complexity Low_complexity 1 36 0 324 320 41 35 chrX 160580826 160580998 -16393142 + L1ME3A LINE L1 5769 5941 -229 2629 115 0 0 chrX 160581147 160581511 -16392629 - THE1B LTR MaLR 0 364 1 1802 184 16 16 chrX 160581953 160582318 -16391822 - MLT1A1 LTR MaLR 0 365 1 31 0 0 0 chrX 160582670 160582701 -16391439 + AT_rich Low_complexity Low_complexity 1 31 0 1196 136 82 0 chrX 160582983 160583203 -16390937 - L1PA13 LINE L1 -4 6159 5922 1547 183 10 7 chrX 160584423 160584713 -16389427 + AluJo SINE Alu 7 297 -15 321 272 46 27 chrX 160585103 160585303 -16388837 + L1ME3 LINE L1 5683 5886 -276 38 0 0 0 chrX 160585394 160585432 -16388708 + AT_rich Low_complexity Low_complexity 1 38 0 339 251 87 5 chrX 160585584 160585791 -16388349 + L1M4 LINE L1 4427 4650 -1496 2173 64 22 0 chrX 160586054 160586321 -16387819 - AluY SINE Alu -1 310 38 3238 100 29 4 chrX 160586328 160586816 -16387324 - L1PA11 LINE L1 -2 6172 5673 1178 262 55 49 chrX 160586957 160587323 -16386817 - MLT1E LTR MaLR -19 574 207 1201 198 109 39 chrX 160587377 160587715 -16386425 - MLT1A2 LTR MaLR 0 374 13 536 189 57 0 chrX 160587811 160587917 -16386223 - MLT1E LTR MaLR -481 112 1 608 153 47 12 chrX 160587945 160588299 -16385841 + (TCTA)n Simple_repeat Simple_repeat 1 366 0 2719 157 52 31 chrX 160588715 160589160 -16384980 - MER1A DNA MER1_type -2174 526 92 271 0 51 0 chrX 160589160 160589199 -16384941 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 1982 147 0 0 chrX 160589201 160589480 -16384660 - AluSx SINE Alu -33 279 1 2719 157 52 31 chrX 160589480 160589546 -16384594 - MER1A DNA MER1_type -2608 92 1 1389 244 94 37 chrX 160591202 160591637 -16382503 + MLT1C LTR MaLR 1 460 -7 309 265 36 12 chrX 160592242 160592325 -16381815 - L2 LINE L2 -47 3266 3182 677 162 54 0 chrX 160592345 160592521 -16381619 + L1PB1 LINE L1 5910 6145 -6 381 322 83 22 chrX 160592650 160592830 -16381310 + MER91A DNA MER1_type 2 192 -4 2046 127 3 0 chrX 160593035 160593327 -16380813 - AluSx SINE Alu -19 293 1 1667 173 10 16 chrX 160594000 160594335 -16379805 - AluJb SINE Alu 0 333 1 255 61 0 0 chrX 160594570 160594603 -16379537 + (T)n Simple_repeat Simple_repeat 1 33 0 2106 132 3 0 chrX 160595790 160596085 -16378055 - AluSx SINE Alu -16 296 1 21 0 0 0 chrX 160596186 160596207 -16377933 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 160596595 160596631 -16377509 + AT_rich Low_complexity Low_complexity 1 36 0 223 182 30 30 chrX 160597005 160597104 -16377036 + GA-rich Low_complexity Low_complexity 2 100 0 4114 50 0 0 chrX 160597190 160597693 -16376447 - L1PA5 LINE L1 -9 6145 5643 240 204 0 0 chrX 160597994 160598038 -16376102 - L2 LINE L2 -5 3308 3265 40 49 0 0 chrX 160598232 160598293 -16375847 + AT_rich Low_complexity Low_complexity 1 61 0 1964 125 0 28 chrX 160598347 160598662 -16375478 + AluSg SINE Alu 6 310 0 21 57 0 0 chrX 160598690 160598725 -16375415 + AT_rich Low_complexity Low_complexity 1 35 0 433 161 100 39 chrX 160599931 160600061 -16374079 + ORSL DNA AcHobo 48 185 -90 26 0 0 0 chrX 160600061 160600087 -16374053 + AT_rich Low_complexity Low_complexity 1 26 0 217 333 0 0 chrX 160600145 160600205 -16373935 + MER5A DNA MER1_type 110 169 -20 1392 99 0 0 chrX 160601018 160601209 -16372931 - L1PA14 LINE L1 -9 6152 5962 996 162 34 0 chrX 160601209 160601388 -16372752 - L1P LINE L1 -1107 5039 4855 1389 146 0 5 chrX 160601940 160602152 -16371988 + AluSg SINE Alu 1 211 -99 1444 180 9 91 chrX 160602213 160602552 -16371588 - AluJb SINE Alu -1 311 1 1891 154 41 0 chrX 160604095 160604387 -16369753 + AluJb SINE Alu 1 304 -8 3086 166 57 5 chrX 160604749 160605365 -16368775 - MER4D LTR ERV1 0 866 260 2144 158 46 35 chrX 160605421 160605961 -16368179 - MLT2A2 LTR ERVL 0 554 1 518 122 0 0 chrX 160606020 160606094 -16368046 - MER4D LTR ERV1 -680 223 150 2822 211 53 75 chrX 160806097 160806896 -16167244 - L1P3 LINE L1 -5671 790 10 2363 71 7 0 chrX 160806980 160807275 -16166865 + AluY SINE Alu 1 297 -14 2017 168 9 0 chrX 160807566 160807899 -16166241 - L1PA16 LINE L1 -62 6104 5769 16459 28 1 1 chrX 160807923 160810524 -16163616 - L1PA3 LINE L1 -3 6152 3553 337 234 0 0 chrX 160810564 160810628 -16163512 + MER2 DNA MER2_type 280 343 -2 2384 71 3 7 chrX 160810711 160811007 -16163133 + AluSx SINE Alu 1 295 -17 265 236 28 14 chrX 160811232 160811304 -16162836 + L2 LINE L2 3240 3312 -1 1024 158 6 0 chrX 160811778 160811936 -16162204 + FRAM SINE Alu 1 158 -18 21 0 0 0 chrX 160812056 160812077 -16162063 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 160812086 160812107 -16162033 + AT_rich Low_complexity Low_complexity 1 21 0 913 39 5 3 chrX 160812124 160812151 -16161989 + L1PA4 LINE L1 5769 5794 -360 2007 38 0 34 chrX 160812151 160812416 -16161724 - L1PA5 LINE L1 -18 6136 5881 913 39 5 3 chrX 160812416 160812520 -16161620 + L1PA5 LINE L1 5794 5901 -253 2136 205 36 71 chrX 160812925 160813555 -16160585 + L1ME3A LINE L1 5562 6169 -1 261 0 0 0 chrX 160814256 160814285 -16159855 + (T)n Simple_repeat Simple_repeat 1 29 0 379 312 21 0 chrX 160814552 160814645 -16159495 + MER5A DNA MER1_type 11 105 -84 2320 115 0 0 chrX 160814953 160815265 -16158875 + AluSx SINE Alu 1 312 0 680 243 56 70 chrX 160815466 160815750 -16158390 + MLT1J LTR MaLR 1 280 -231 757 301 176 7 chrX 160815831 160816257 -16157883 + HAL1 LINE L1 237 734 -1773 2418 279 85 22 chrX 160816272 160817328 -16156812 + HAL1 LINE L1 786 1908 -599 180 0 0 0 chrX 160817976 160817996 -16156144 + (TAA)n Simple_repeat Simple_repeat 2 21 0 975 125 6 81 chrX 160818105 160818320 -16155820 + MLT1C LTR MaLR 4 195 -195 1023 141 5 50 chrX 160818461 160818660 -16155480 + MSTD LTR MaLR 1 190 -206 564 144 44 0 chrX 160818656 160818746 -16155394 + MSTD LTR MaLR 303 396 0 * 693 267 135 17 chrX 160819722 160819959 -16154181 - MLT1J1 LTR MaLR -2 444 236 180 0 0 0 chrX 160819959 160819979 -16154161 + (GA)n Simple_repeat Simple_repeat 2 21 0 693 267 135 17 chrX 160819979 160820000 -16154140 - MLT1J1 LTR MaLR -210 236 219 2374 104 64 14 chrX 160820000 160820357 -16153783 + THE1C LTR MaLR 1 375 0 693 267 135 17 chrX 160820357 160820453 -16153687 - MLT1J1 LTR MaLR -227 219 47 1306 256 78 58 chrX 160820664 160821202 -16152938 - MLT1H LTR MaLR 0 549 1 1868 224 120 13 chrX 160821570 160822038 -16152102 + MLT2B1 LTR ERVL 1 518 -2 494 259 15 15 chrX 160822755 160822890 -16151250 - MIR SINE MIR -116 146 12 1307 270 63 10 chrX 160823623 160824038 -16150102 + LTR16A LTR ERVL 14 450 0 367 337 95 16 chrX 160824236 160824479 -16149661 - MLT2E LTR ERVL -11 617 356 418 278 35 17 chrX 160824552 160824667 -16149473 - MLT2E LTR ERVL -500 128 12 250 204 0 0 chrX 160825549 160825593 -16148547 + MER5A DNA MER1_type 1 44 -145 729 291 136 24 chrX 160826233 160826608 -16147532 + LTR16C LTR ERVL 73 489 -2 343 333 18 9 chrX 160826678 160826792 -16147348 - L2 LINE L2 -17 3296 3182 191 364 36 0 chrX 160828347 160828457 -16145683 + L2 LINE L2 676 789 -2525 2008 101 10 20 chrX 160828633 160828929 -16145211 - AluSc SINE Alu -16 293 1 269 266 51 13 chrX 160829675 160829754 -16144386 + MIR SINE MIR 48 129 -133 241 184 0 0 chrX 160829837 160829886 -16144254 - L2 LINE L2 -1 3312 3264 1464 259 69 42 chrX 160831816 160832294 -16141846 - LTR16C LTR ERVL 0 491 1 693 262 11 16 chrX 160832674 160832861 -16141279 - MIR SINE MIR 0 262 77 2237 96 45 24 chrX 160833418 160833750 -16140390 - THE1C LTR MaLR 0 375 37 8391 108 21 84 chrX 160833750 160834599 -16139541 - THE1C-int LTR MaLR -238 1342 619 242 0 61 0 chrX 160834599 160834632 -16139508 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 8391 108 21 84 chrX 160834632 160835215 -16138925 - THE1C-int LTR MaLR -961 619 1 2899 101 3 8 chrX 160835215 160835592 -16138548 - THE1C LTR MaLR 0 375 1 1481 278 58 8 chrX 160836039 160836525 -16137615 + L1MC4 LINE L1 6702 7211 -831 1631 219 57 0 chrX 160836637 160837006 -16137134 + L1P LINE L1 4060 4449 -1697 3897 119 13 6 chrX 160837015 160837806 -16136334 - L1P4 LINE L1 -632 5536 4743 3362 83 14 7 chrX 160837806 160838239 -16135901 + L1PA12 LINE L1 5732 6168 0 5027 132 0 20 chrX 160838268 160839027 -16135113 + L1PA15 LINE L1 5422 6165 0 874 244 37 53 chrX 160839074 160839373 -16134767 + MER20B DNA MER1_type 253 546 -237 2241 145 74 57 chrX 160839482 160839957 -16134183 - L1MC1 LINE L1 -11 6322 5840 761 179 82 11 chrX 160839997 160840181 -16133959 + MER20B DNA MER1_type 547 743 -40 3310 165 3 51 chrX 160840181 160840804 -16133336 + L1MB2 LINE L1 5572 6164 -7 621 260 119 39 chrX 160842422 160842844 -16131296 - MLT1H LTR MaLR 0 549 21 405 285 46 46 chrX 160843621 160843772 -16130368 + MIR3 SINE MIR 20 170 -38 463 258 111 16 chrX 160844684 160844874 -16129266 + L1MEc LINE L1 1627 1834 -4562 226 259 103 0 chrX 160845191 160845307 -16128833 + L1ME4a LINE L1 5991 6118 -3 23 33 0 0 chrX 160845631 160845661 -16128479 + AT_rich Low_complexity Low_complexity 1 30 0 704 196 7 7 chrX 160845778 160845921 -16128219 - MLT1A1 LTR MaLR 0 365 223 * 1804 110 0 4 chrX 160845916 160846162 -16127978 + THE1B LTR MaLR 118 362 -2 12333 86 0 0 chrX 160846164 160847724 -16126416 - HERVL-A2 LTR ERVL -1944 3710 2151 * 14573 101 3 4 chrX 160847715 160849668 -16124472 - HERVL-A2 LTR ERVL -3704 1950 1 2067 181 34 31 chrX 160849668 160850215 -16123925 - MLT2A2 LTR ERVL 0 554 4 1651 92 0 35 chrX 160850215 160850443 -16123697 + L1PA11 LINE L1 5955 6174 0 1877 188 42 0 chrX 160850644 160850974 -16123166 + MER2 DNA MER2_type 1 344 0 477 257 59 29 chrX 160851386 160851522 -16122618 + MIR SINE MIR 47 186 -76 602 218 112 34 chrX 160853146 160853374 -16120766 + MLT1J2 LTR MaLR 18 262 -184 313 198 156 10 chrX 160853394 160853490 -16120650 + MLT1J1 LTR MaLR 337 446 0 1229 167 43 0 chrX 160853532 160853742 -16120398 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chrX 160853835 160853866 -16120274 + AT_rich Low_complexity Low_complexity 1 31 0 388 310 9 17 chrX 160854277 160854393 -16119747 + L2 LINE L2 3197 3311 -2 250 219 53 88 chrX 160854473 160854587 -16119553 - Charlie8 DNA MER1_type -2258 159 50 428 270 35 58 chrX 160854690 160854719 -16119421 - MIR SINE MIR -15 247 219 1364 260 129 8 chrX 160854719 160855207 -16118933 - MLT1H LTR MaLR 0 549 3 428 270 35 58 chrX 160855207 160855271 -16118869 - MIR SINE MIR -43 219 155 1580 177 44 49 chrX 160855271 160855342 -16118798 - MLT1A1 LTR MaLR 0 365 295 2128 122 16 0 chrX 160855342 160855646 -16118494 + AluSc SINE Alu 1 309 0 1580 177 44 49 chrX 160855646 160855941 -16118199 - MLT1A1 LTR MaLR -70 295 1 428 270 35 58 chrX 160855941 160856020 -16118120 - MIR SINE MIR -107 155 78 1832 153 49 27 chrX 160856221 160856588 -16117552 - THE1C LTR MaLR 0 375 1 9117 126 41 41 chrX 160856588 160858165 -16115975 - THE1C-int LTR MaLR 0 1580 4 254 116 23 23 chrX 160858168 160858211 -16115929 - THE1C LTR MaLR 0 355 313 4694 135 0 62 chrX 160858211 160859003 -16115137 - L1P LINE L1 -1373 4773 4031 6867 34 4 0 chrX 160859004 160859835 -16114305 + L1PA4 LINE L1 5320 6153 -2 1668 156 41 38 chrX 160859840 160860179 -16113961 - THE1C LTR MaLR -35 340 1 998 185 23 0 chrX 160861209 160861382 -16112758 + MER5B DNA MER1_type 1 177 -1 22 0 0 0 chrX 160862352 160862374 -16111766 + AT_rich Low_complexity Low_complexity 1 22 0 598 255 52 21 chrX 160862680 160862872 -16111268 - HAL1 LINE L1 -2286 221 24 237 308 85 24 chrX 160862934 160863181 -16110959 - L1MEc LINE L1 -4587 1723 1462 1030 272 100 73 chrX 160863285 160863913 -16110227 - L1MEc LINE L1 -5122 997 353 395 276 65 24 chrX 160863962 160864132 -16110008 - L1MEc LINE L1 -5903 216 40 1653 209 24 95 chrX 160864305 160864894 -16109246 + L1MC4 LINE L1 7496 8042 0 370 29 43 29 chrX 160865810 160865880 -16108260 + (TTATA)n Simple_repeat Simple_repeat 5 75 0 15764 155 28 7 chrX 160866139 160870467 -16103673 - L1MA3 LINE L1 0 7724 3486 183 80 0 0 chrX 160870467 160870492 -16103648 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 15764 155 28 7 chrX 160870492 160870853 -16103287 - L1MA3 LINE L1 -4238 3486 3134 2180 126 0 0 chrX 160870853 160871154 -16102986 - AluSx SINE Alu -11 301 1 15764 155 28 7 chrX 160871154 160871459 -16102681 - L1MA3 LINE L1 -4590 3134 2622 1425 253 55 68 chrX 160871459 160872079 -16102061 - LTR9 LTR ERV1 0 612 1 7209 188 3 1 chrX 160872082 160873292 -16100848 - L1M1 LINE L1 -5974 1591 379 * 20996 52 29 12 chrX 160873291 160876177 -16097963 + L1P LINE L1 2470 5403 -743 219 381 114 0 chrX 160876624 160876800 -16097340 + L2 LINE L2 2866 3061 -211 4564 168 35 8 chrX 160877144 160878015 -16096125 - L1MB8 LINE L1 -60 6118 5224 1258 34 11 17 chrX 160878184 160878212 -16095928 + (GAA)n Simple_repeat Simple_repeat 1 205 0 1258 34 11 17 chrX 160878212 160878391 -16095749 + (GAA)n Simple_repeat Simple_repeat 3 180 0 357 24 0 0 chrX 160878615 160878657 -16095483 + (CA)n Simple_repeat Simple_repeat 1 42 0 1649 193 24 3 chrX 160879698 160880035 -16094105 - L1MD3 LINE L1 0 7995 7652 * 7073 37 0 0 chrX 160880031 160880873 -16093267 - L1PA4 LINE L1 -1 6154 5313 1466 184 19 0 chrX 160880873 160881144 -16092996 - L1MC4 LINE L1 -481 7561 7286 22 35 0 0 chrX 160881577 160881606 -16092534 + AT_rich Low_complexity Low_complexity 1 29 0 346 383 35 0 chrX 160882395 160882536 -16091604 + L2 LINE L2 3124 3269 -3 258 311 83 23 chrX 160882882 160883014 -16091126 + L2 LINE L2 3173 3312 -1 24 32 0 0 chrX 160883337 160883368 -16090772 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chrX 160883518 160883541 -16090599 + AT_rich Low_complexity Low_complexity 1 23 0 221 306 28 28 chrX 160883791 160883899 -16090241 - L3b LINE CR1 -178 1405 1298 2031 226 105 15 chrX 160885148 160885628 -16088512 + L1MC4 LINE L1 7381 7929 -113 357 24 0 0 chrX 160885628 160885670 -16088470 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 2031 226 105 15 chrX 160885670 160885796 -16088344 + L1MC4 LINE L1 7929 8042 0 410 310 99 12 chrX 160886269 160886440 -16087700 + MER20B DNA MER1_type 46 231 -552 3913 92 14 54 chrX 160886443 160887162 -16086978 + L1PB1 LINE L1 5460 6149 -2 246 270 34 51 chrX 160887302 160887480 -16086660 + HAL1 LINE L1 2333 2507 0 429 20 0 0 chrX 160887537 160887587 -16086553 + (TC)n Simple_repeat Simple_repeat 2 51 0 1173 305 29 22 chrX 160888548 160889036 -16085104 + LTR16C LTR ERVL 1 491 0 214 229 114 86 chrX 160890136 160890241 -16083899 - L2 LINE L2 -9 3304 3197 * 548 234 181 10 chrX 160890232 160890437 -16083703 - MIR SINE MIR -22 240 1 434 333 113 50 chrX 160890573 160890997 -16083143 - L2 LINE L2 -2 3270 2820 398 262 49 0 chrX 160891001 160891123 -16083017 + MER94 DNA DNA 7 134 0 573 320 35 73 chrX 160891128 160891469 -16082671 - L2 LINE L2 -519 2795 2468 276 361 143 0 chrX 160892592 160892725 -16081415 - MIR3 SINE MIR -40 168 17 299 276 179 67 chrX 160893564 160893861 -16080279 + L2 LINE L2 1732 2061 -1253 317 326 0 0 chrX 160894566 160894652 -16079488 - L2 LINE L2 -6 3307 3222 26 30 0 0 chrX 160895125 160895158 -16078982 + AT_rich Low_complexity Low_complexity 1 33 0 2101 205 102 2 chrX 160895700 160896159 -16077981 + MLT1D LTR MaLR 1 505 0 396 249 49 101 chrX 160896164 160896583 -16077557 - MLT1H LTR MaLR -8 541 42 878 228 55 15 chrX 160896610 160896812 -16077328 + MER63A DNA MER1_type 1 210 0 910 213 0 0 chrX 160896914 160897083 -16077057 - FRAM SINE Alu -7 169 1 183 42 0 0 chrX 160898379 160898403 -16075737 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 199 316 86 79 chrX 160898404 160898543 -16075597 - L2 LINE L2 -10 3262 3123 188 261 14 72 chrX 160899194 160899263 -16074877 - L2 LINE L2 -207 3065 3001 7575 163 55 15 chrX 160899327 160900889 -16073251 + Charlie5 DNA MER1_type 175 1798 -814 4456 139 11 22 chrX 160900898 160901682 -16072458 - L1MB8 LINE L1 -9 6169 5394 3629 150 38 16 chrX 160901682 160902442 -16071698 + Charlie5 DNA MER1_type 1785 2561 -51 2086 172 97 0 chrX 160902972 160903362 -16070778 + MSTC LTR MaLR 1 428 0 412 238 74 35 chrX 160903408 160903610 -16070530 + L1ME4a LINE L1 5908 6117 -4 766 219 141 37 chrX 160904202 160904471 -16069669 + LTR50 LTR ERVL 9 305 -490 735 225 158 0 chrX 160904481 160904703 -16069437 + LTR50 LTR ERVL 539 795 0 317 136 30 45 chrX 160904814 160904880 -16069260 + MER2 DNA MER2_type 1 65 -280 194 354 20 30 chrX 160905165 160905264 -16068876 - L2 LINE L2 -672 2642 2545 554 181 55 47 chrX 160905921 160906048 -16068092 - MER5B DNA MER1_type -1 177 50 269 227 103 21 chrX 160906052 160906149 -16067991 + L1M4 LINE L1 3725 3829 -2317 331 239 15 0 chrX 160906152 160906219 -16067921 - MER5B DNA MER1_type -110 68 1 253 307 34 0 chrX 160906931 160907019 -16067121 - MIR SINE MIR -72 190 100 652 269 124 5 chrX 160907054 160907247 -16066893 + MIR SINE MIR 1 216 -46 2393 116 5 30 chrX 160907704 160908076 -16066064 - THE1B LTR MaLR -1 363 1 2225 56 4 0 chrX 160908395 160908665 -16065475 - AluY SINE Alu -1 310 40 295 229 96 62 chrX 160908761 160909001 -16065139 + L1MC4a LINE L1 3520 3767 -2379 321 26 0 0 chrX 160909117 160909155 -16064985 + (TC)n Simple_repeat Simple_repeat 2 39 0 264 143 43 0 chrX 160909155 160909225 -16064915 + (TA)n Simple_repeat Simple_repeat 1 73 0 725 299 10 0 chrX 160909227 160909428 -16064712 - MIR SINE MIR -58 204 2 874 83 30 0 chrX 160909537 160909669 -16064471 - L1MB3 LINE L1 -2 6181 6046 16736 29 0 1 chrX 160909678 160912440 -16061700 + L1PA3 LINE L1 3389 6150 -5 1392 303 103 28 chrX 160912481 160914199 -16059941 + L1MC4a LINE L1 4030 5384 -762 22 0 0 0 chrX 160914211 160914233 -16059907 + AT_rich Low_complexity Low_complexity 1 22 0 395 267 90 2 chrX 160914424 160914595 -16059545 + L1MEc LINE L1 1553 1737 -839 292 253 19 68 chrX 160914904 160915066 -16059074 + HAL1 LINE L1 2245 2398 -109 216 303 34 34 chrX 160915165 160915254 -16058886 - MIR SINE MIR -125 137 49 998 203 11 0 chrX 160915275 160915457 -16058683 - MER5A DNA MER1_type -3 186 3 15169 170 16 15 chrX 160916076 160916439 -16057701 - L1PA16 LINE L1 0 6882 6521 213 39 0 0 chrX 160916439 160916465 -16057675 + (TG)n Simple_repeat Simple_repeat 2 27 0 15169 170 16 15 chrX 160916465 160922204 -16051936 - L1PA16 LINE L1 -361 6521 636 1177 166 5 0 chrX 160922206 160922405 -16051735 - L1PA16 LINE L1 -6663 200 1 261 104 149 60 chrX 160923006 160923073 -16051067 - MLT1J1 LTR MaLR -2 444 372 1517 145 0 0 chrX 160923132 160923359 -16050781 + MLT2D LTR ERVL 1 227 -187 1893 166 0 16 chrX 160924128 160924435 -16049705 - AluJb SINE Alu -7 305 4 615 203 112 0 chrX 160924542 160924685 -16049455 - MER20 DNA MER1_type -39 180 22 2331 78 0 7 chrX 160925136 160925432 -16048708 - AluY SINE Alu -16 295 2 1860 146 54 3 chrX 160926884 160927179 -16046961 + AluJb SINE Alu 1 310 -2 324 197 15 0 chrX 160929019 160929085 -16045055 - L1M4 LINE L1 -1378 4768 4702 4965 219 72 41 chrX 160929105 160931354 -16042786 - L1MD2 LINE L1 -248 6111 3790 * 9199 200 35 10 chrX 160931351 160933943 -16040197 - L1P4 LINE L1 -464 7140 4491 618 266 51 29 chrX 160933941 160934286 -16039854 - L1P4 LINE L1 -5088 2486 2222 * 280 348 22 14 chrX 160935030 160935168 -16038972 - L1P4 LINE L1 -5286 2288 2150 * 929 322 40 44 chrX 160935166 160935644 -16038496 - L1P4 LINE L1 -6177 1397 922 258 297 11 22 chrX 160935633 160935724 -16038416 + L1PA13 LINE L1 1422 1511 -5276 * 526 250 8 0 chrX 160935726 160935854 -16038286 - L1M2 LINE L1 -6709 140 12 2409 196 51 27 chrX 160936045 160936678 -16037462 - L1MDa LINE L1 -4518 2022 1375 1399 275 30 35 chrX 160936680 160937247 -16036893 - L1MEc LINE L1 -4488 1908 1345 350 229 0 0 chrX 160937250 160937320 -16036820 - L1MEc LINE L1 -6299 97 28 250 259 0 0 chrX 160937321 160937375 -16036765 + MER5B DNA MER1_type 123 176 -2 21 0 0 0 chrX 160937930 160937951 -16036189 + AT_rich Low_complexity Low_complexity 1 21 0 182 311 204 29 chrX 160939044 160939147 -16034993 + MIR SINE MIR 17 137 -71 420 238 0 0 chrX 160939270 160939375 -16034765 + L1MA10 LINE L1 6219 6323 -11 1901 100 43 0 chrX 160939476 160939755 -16034385 + L1PA14 LINE L1 5859 6149 -12 267 290 0 0 chrX 160940745 160940814 -16033326 - MIR SINE MIR -12 250 182 399 253 0 0 chrX 160940949 160941028 -16033112 - L2 LINE L2 -4 3309 3231 44159 40 1 6 chrX 160941426 160947610 -16026530 + L1PA4 LINE L1 1 6151 -4 597 272 67 9 chrX 160947614 160947838 -16026302 + MLT1C LTR MaLR 171 407 -60 25 65 0 0 chrX 160947839 160947885 -16026255 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chrX 160947966 160947995 -16026145 + AT_rich Low_complexity Low_complexity 1 29 0 1016 254 24 0 chrX 160948656 160948869 -16025271 + MER58A DNA MER1_type 1 218 -6 24 32 0 0 chrX 160948959 160948990 -16025150 + AT_rich Low_complexity Low_complexity 1 31 0 324 205 0 39 chrX 160949431 160949509 -16024631 + MIR SINE MIR 130 204 -58 788 304 53 24 chrX 160950277 160950414 -16023726 + LTR16C LTR ERVL 107 256 -235 2658 160 32 0 chrX 160950414 160950857 -16023283 - MSTB2 LTR MaLR 0 457 1 788 304 53 24 chrX 160950857 160950966 -16023174 + LTR16C LTR ERVL 256 360 -131 1711 76 0 4 chrX 160951011 160951236 -16022904 + L1PA8 LINE L1 5947 6170 -2 590 223 77 0 chrX 160951247 160951377 -16022763 + LTR16C LTR ERVL 350 489 -2 530 296 66 27 chrX 160953098 160953706 -16020434 - L1MEc LINE L1 -4817 1438 790 229 305 47 16 chrX 160954057 160954185 -16019955 - L1MEc LINE L1 -5986 219 88 * 390 301 44 31 chrX 160954176 160954402 -16019738 + HAL1 LINE L1 790 1018 -1489 28 0 0 0 chrX 160954697 160954725 -16019415 + AT_rich Low_complexity Low_complexity 1 28 0 37 23 0 0 chrX 160954917 160954961 -16019179 + AT_rich Low_complexity Low_complexity 1 44 0 2397 76 0 3 chrX 160954961 160955265 -16018875 - AluY SINE Alu -8 303 1 2103 171 46 108 chrX 160955375 160955920 -16018220 - MLT2B1 LTR ERVL -9 511 1 189 0 0 0 chrX 160956457 160956478 -16017662 + (A)n Simple_repeat Simple_repeat 1 21 0 545 224 26 0 chrX 160956575 160956691 -16017449 - MER96 DNA MER1_type? -56 119 1 210 355 35 49 chrX 160956694 160956897 -16017243 - L2 LINE L2 -1171 2143 1944 329 284 187 23 chrX 160956916 160957519 -16016621 + L1ME4a LINE L1 5333 6025 -96 338 343 39 20 chrX 160957648 160957852 -16016288 - L2 LINE L2 -1389 1925 1718 683 239 161 0 chrX 160958024 160958204 -16015936 + MIR SINE MIR 33 241 -21 2437 137 13 3 chrX 160958207 160958593 -16015547 - MLT1B LTR MaLR 0 390 1 204 342 37 19 chrX 160958596 160958757 -16015383 - L2 LINE L2 -2609 705 542 216 64 64 0 chrX 160958767 160958814 -16015326 + (TA)n Simple_repeat Simple_repeat 2 51 0 402 279 43 91 chrX 160959608 160959884 -16014256 - L2 LINE L2 -2880 434 172 29 0 0 0 chrX 160960022 160960051 -16014089 + AT_rich Low_complexity Low_complexity 1 29 0 4821 58 6 32 chrX 160960508 160961168 -16012972 + L1PA7 LINE L1 5511 6153 -1 4674 104 24 1 chrX 160961168 160961837 -16012303 + L1PA15 LINE L1 5477 6165 0 2058 107 7 20 chrX 160961851 160962151 -16011989 + AluSx SINE Alu 1 296 -16 3883 17 0 15 chrX 160962375 160962835 -16011305 - L1PA3 LINE L1 0 6155 5703 350 329 205 14 chrX 160964381 160964941 -16009199 + L2 LINE L2 2139 2805 -509 4970 239 65 34 chrX 160964992 160965877 -16008263 - L1ME2 LINE L1 -8 6156 5300 2272 113 3 0 chrX 160965877 160966187 -16007953 - AluSp SINE Alu 0 313 3 4970 239 65 34 chrX 160966187 160967894 -16006246 - L1ME2 LINE L1 -864 5300 3477 5217 128 37 22 chrX 160968003 160968453 -16005687 - L1MA4 LINE L1 -62 6238 5796 2120 77 3 35 chrX 160968453 160968763 -16005377 - AluY SINE Alu -11 300 1 5217 128 37 22 chrX 160968763 160968949 -16005191 - L1MA4 LINE L1 -504 5796 5614 1068 92 6 12 chrX 160968949 160969113 -16005027 - L1MA4A LINE L1 -3 6300 6138 5217 128 37 22 chrX 160969113 160969383 -16004757 - L1MA4 LINE L1 -686 5614 5317 989 65 14 0 chrX 160969385 160969524 -16004616 - L1PA13 LINE L1 0 6163 6023 2936 67 0 3 chrX 160969524 160969903 -16004237 - L1PA5 LINE L1 0 6154 5770 39202 64 3 6 chrX 160969907 160975856 -15998284 - L1PA5 LINE L1 0 6154 227 2863 72 5 0 chrX 160975857 160976233 -15997907 - L1PA13 LINE L1 -127 6036 5659 796 162 40 25 chrX 160976233 160976431 -15997709 - L1MA4 LINE L1 -839 5307 5107 454 275 29 49 chrX 160976430 160976565 -15997575 - L1MEc LINE L1 -2674 4283 4147 * 1777 153 90 6 chrX 160976565 160976898 -15997242 + MER46B DNA MER2_type 1 236 0 454 275 29 49 chrX 160976898 160977148 -15996992 - L1MEc LINE L1 -2810 4147 3906 649 122 0 163 chrX 160977160 160977307 -15996833 - FLAM_C SINE Alu -18 125 3 2567 262 62 10 chrX 160977314 160978382 -15995758 - L1MEc LINE L1 -3063 3894 2799 1068 187 20 10 chrX 160978384 160978582 -15995558 - MER20 DNA MER1_type -2 217 18 1130 266 40 38 chrX 160978636 160979786 -15994354 - L1MEc LINE L1 -4356 2782 1394 353 368 16 0 chrX 160980311 160980504 -15993636 - L1MEc LINE L1 -6170 968 773 309 312 50 28 chrX 160982183 160982324 -15991816 + MIR SINE MIR 48 191 -71 263 248 120 70 chrX 160983124 160983483 -15990657 - L1ME LINE L1 -5175 905 529 3222 108 21 0 chrX 160983609 160984079 -15990061 + L1PA16 LINE L1 5676 6155 -11 369 334 10 31 chrX 160984216 160984407 -15989733 + MIR SINE MIR 60 246 -16 582 266 20 50 chrX 161385161 161385485 -15588655 - PABL_B LTR ERV1 -212 448 1 565 215 42 62 chrX 161385689 161386164 -15587976 - MER83B-int LTR ERV1 -1955 2925 1554 630 122 10 10 chrX 161386180 161386278 -15587862 + MER4A LTR ERV1 1 98 -566 1582 114 208 89 chrX 161386278 161386639 -15587501 + MER4A LTR ERV1 261 664 0 1029 171 5 20 chrX 161386783 161386982 -15587158 - MER4E LTR ERV1 0 779 584 243 0 0 0 chrX 161387097 161387124 -15587016 + (T)n Simple_repeat Simple_repeat 1 27 0 324 309 109 23 chrX 161387257 161387432 -15586708 - HAL1 LINE L1 -2314 193 4 5266 129 10 7 chrX 161387726 161388563 -15585577 - L1PA15 LINE L1 -4 6161 5323 877 217 6 0 chrX 161388563 161388738 -15585402 - AluJb SINE Alu -2 310 135 3463 198 31 12 chrX 161388740 161389212 -15584928 - L1PA15 LINE L1 -815 5331 4835 1724 150 55 30 chrX 161389212 161389578 -15584562 + THE1C LTR MaLR 1 375 0 3463 198 31 12 chrX 161389578 161389942 -15584198 - L1PA15 LINE L1 -1311 4835 4479 303 293 69 6 chrX 161390790 161390964 -15583176 - L1ME LINE L1 -351 5770 5586 1037 184 37 129 chrX 161391547 161391949 -15582191 + MLT1A1 LTR MaLR 1 365 0 333 320 49 48 chrX 161392147 161392254 -15581886 + L1MDa LINE L1 1581 1686 -4880 2138 118 59 36 chrX 161392254 161392610 -15581530 - THE1B LTR MaLR 0 364 1 333 320 49 48 chrX 161392610 161392786 -15581354 + L1MDa LINE L1 1686 1888 -4678 3702 104 21 14 chrX 161392791 161393360 -15580780 - L1PB1 LINE L1 0 6151 5579 477 136 0 0 chrX 161393362 161393470 -15580670 + AluSg/x SINE Alu 217 324 0 829 185 26 0 chrX 161393641 161393792 -15580348 + PABL_B LTR ERV1 513 667 0 1679 247 45 29 chrX 161393792 161394839 -15579301 + PABL_B-int LTR ERV1 2 1239 -5883 6779 259 2 4 chrX 161394950 161396324 -15577816 + PABL_B-int LTR ERV1 2690 4061 -3061 2415 226 42 9 chrX 161396320 161397219 -15576921 + PABL_B-int LTR ERV1 4926 5886 -1236 * 1844 217 27 86 chrX 161397243 161397755 -15576385 + PABL_B-int LTR ERV1 6641 7122 0 481 273 34 48 chrX 161397755 161397964 -15576176 + PABL_B LTR ERV1 1 206 -461 949 180 17 6 chrX 161398095 161398267 -15575873 + PABL_B LTR ERV1 494 667 0 965 220 14 25 chrX 161398271 161398548 -15575592 + MER57-int LTR ERV1 2299 2572 -2551 3376 230 89 49 chrX 161398650 161400484 -15573656 + MER57-int LTR ERV1 2493 4103 -768 1531 253 51 13 chrX 161400596 161400988 -15573152 + MER57-int LTR ERV1 6738 7144 -393 1120 183 25 38 chrX 161400988 161401228 -15572912 + LTR54 LTR ERV1 1 237 -273 295 237 31 29 chrX 161401270 161401366 -15572774 + MLT1G1 LTR MaLR 460 547 -2 2293 227 91 29 chrX 161401850 161402302 -15571838 - MER50 LTR ERV1 0 734 224 2028 140 0 10 chrX 161402302 161402781 -15571359 - AluSc SINE Alu 0 309 1 2293 227 91 29 chrX 161402781 161403011 -15571129 - MER50 LTR ERV1 -510 224 10 8940 123 23 6 chrX 161403011 161404842 -15569298 - MER50-int LTR ERV1 -2 7203 4164 2755 202 88 3 chrX 161404842 161405435 -15568705 - MER50-int LTR ERV1 -3002 4203 3561 1113 163 69 0 chrX 161405428 161405630 -15568510 - MER50-int LTR ERV1 -1076 3804 3589 * 539 255 0 0 chrX 161405635 161405741 -15568399 - MER50-int LTR ERV1 -4310 2895 2790 * 5265 168 67 29 chrX 161405724 161407308 -15566832 - MER50-int LTR ERV1 -421 4796 3274 189 0 0 0 chrX 161407308 161407329 -15566811 + (GA)n Simple_repeat Simple_repeat 1 21 0 5265 168 67 29 chrX 161407329 161407427 -15566713 - MER50-int LTR ERV1 -1943 3274 4 2162 235 93 23 chrX 161407476 161408131 -15566009 - MER50 LTR ERV1 0 734 34 5632 141 23 45 chrX 161409219 161410314 -15563826 + MER11C LTR ERVK 1 1071 0 493 240 52 7 chrX 161410384 161410538 -15563602 - L1MA9 LINE L1 -36 6276 6116 * 1340 162 15 18 chrX 161410537 161410586 -15563554 + L1MA1 LINE L1 5346 5394 -897 1793 183 10 0 chrX 161410586 161410881 -15563259 + AluJo SINE Alu 2 299 -13 1340 162 15 18 chrX 161410881 161411103 -15563037 + L1MA1 LINE L1 5394 5616 -675 2654 115 8 0 chrX 161411141 161411540 -15562600 + L1MA1 LINE L1 5842 6243 -59 29 84 0 0 chrX 161411546 161411617 -15562523 + AT_rich Low_complexity Low_complexity 1 71 0 837 206 50 153 chrX 161412239 161412656 -15561484 + MLT1A2 LTR MaLR 1 374 0 2043 170 0 15 chrX 161413363 161413705 -15560435 + MER1B DNA MER1_type 1 337 0 264 313 20 50 chrX 161413732 161413831 -15560309 - L2 LINE L2 -564 2750 2655 450 0 0 0 chrX 161413962 161414012 -15560128 + (TG)n Simple_repeat Simple_repeat 1 50 0 630 146 0 0 chrX 161414013 161414109 -15560031 - AluJb SINE Alu -34 278 183 907 154 0 0 chrX 161414109 161414245 -15559895 - FLAM_C SINE Alu -7 136 1 270 294 140 7 chrX 161415237 161415373 -15558767 - MIR SINE MIR -57 205 52 455 252 0 0 chrX 161415399 161415510 -15558630 - L1MC4 LINE L1 -400 7642 7532 1522 191 69 20 chrX 161415511 161415814 -15558326 - MLT1A1 LTR MaLR 0 365 48 2572 224 88 31 chrX 161415880 161416194 -15557946 - L1MC4 LINE L1 -528 7514 7219 1385 209 140 9 chrX 161416194 161416544 -15557596 - MSTD LTR MaLR 0 396 1 2572 224 88 31 chrX 161416544 161417039 -15557101 - L1MC4 LINE L1 -823 7219 6659 4329 186 29 34 chrX 161417599 161418437 -15555703 - L1MA7 LINE L1 -10 6281 5440 2076 136 19 48 chrX 161418437 161418812 -15555328 - THE1B LTR MaLR 0 364 1 11338 104 6 1 chrX 161418812 161420383 -15553757 - THE1B-int LTR MaLR 0 1580 1 1962 148 18 73 chrX 161420383 161420768 -15553372 - THE1B LTR MaLR 0 364 1 4329 186 29 34 chrX 161420768 161420879 -15553261 - L1MA7 LINE L1 -849 5442 5332 1955 133 61 19 chrX 161420879 161421239 -15552901 - THE1C LTR MaLR 0 375 1 4329 186 29 34 chrX 161421239 161421575 -15552565 - L1MA7 LINE L1 -959 5332 4999 244 240 13 80 chrX 161421730 161421805 -15552335 - L2 LINE L2 0 3313 3244 2072 188 70 8 chrX 161422366 161422765 -15551375 + MSTA LTR MaLR 1 424 -4 1017 254 67 36 chrX 161422984 161423343 -15550797 - L1ME1 LINE L1 -10 6156 5787 535 130 11 0 chrX 161423344 161423436 -15550704 + L1 LINE L1 4904 4996 -1150 246 200 80 13 chrX 161423453 161423528 -15550612 - L1ME1 LINE L1 -380 5784 5705 * 1147 74 0 12 chrX 161423512 161423674 -15550466 + L1MA1 LINE L1 6105 6264 -38 225 178 0 0 chrX 161424379 161424424 -15549716 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chrX 161424886 161424914 -15549226 + AT_rich Low_complexity Low_complexity 1 28 0 1282 240 130 60 chrX 161425156 161425300 -15548840 + MLT1F1 LTR MaLR 38 170 -397 249 33 0 0 chrX 161425300 161425330 -15548810 + (TC)n Simple_repeat Simple_repeat 1 30 0 1282 240 130 60 chrX 161425330 161425612 -15548528 + MLT1F1 LTR MaLR 170 504 -63 2527 156 18 2 chrX 161425612 161426047 -15548093 + L1PA16 LINE L1 5708 6149 -17 1282 240 130 60 chrX 161426047 161426103 -15548037 + MLT1F1 LTR MaLR 504 555 -12 342 0 0 0 chrX 161426105 161426143 -15547997 + (TG)n Simple_repeat Simple_repeat 2 39 0 204 205 0 0 chrX 161426143 161426182 -15547958 + GA-rich Low_complexity Low_complexity 2 40 0 28 0 0 0 chrX 161426363 161426391 -15547749 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chrX 161427762 161427786 -15546354 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 349 391 107 8 chrX 161428115 161428358 -15545782 - L2 LINE L2 -338 2976 2710 1262 286 72 35 chrX 161428741 161429616 -15544524 + L1M4 LINE L1 4513 5420 -742 738 276 41 105 chrX 161429679 161430118 -15544022 - MLT1E2-int LTR MaLR 0 1371 961 822 237 39 0 chrX 161430322 161430529 -15543611 + L1MA4 LINE L1 14 228 -5100 3472 124 2 28 chrX 161430572 161431145 -15542995 - L1PA15 LINE L1 0 6165 5608 3255 181 45 21 chrX 161431147 161431951 -15542189 + L1MA4 LINE L1 379 1211 -4117 3242 190 47 6 chrX 161431933 161432629 -15541511 + L1MA4 LINE L1 3470 4194 -2134 * 462 198 0 4 chrX 161432629 161432866 -15541274 + AluJb SINE Alu 1 333 0 2471 193 29 14 chrX 161432866 161433691 -15540449 + L1MA4 LINE L1 4182 4993 -1489 2303 95 3 0 chrX 161433691 161433996 -15540144 - AluSp SINE Alu -7 306 1 2471 193 29 14 chrX 161433996 161435237 -15538903 + L1MA4 LINE L1 4993 6479 -3 2311 140 22 0 chrX 161435309 161435665 -15538475 - THE1B LTR MaLR 0 364 1 10068 121 36 2 chrX 161435665 161437192 -15536948 - THE1B-int LTR MaLR 0 1580 2 2617 108 8 0 chrX 161437193 161437554 -15536586 - THE1B LTR MaLR 0 364 1 1182 271 46 38 chrX 161437556 161438112 -15536028 - MLT1E2-int LTR MaLR -768 603 2 1218 269 108 55 chrX 161438118 161438683 -15535457 - MLT1E2 LTR MaLR -3 623 29 2932 119 10 95 chrX 161439532 161440110 -15534030 - MER61E LTR ERV1 -40 529 1 1364 200 16 3 chrX 161441234 161441544 -15532596 - L1MA4 LINE L1 -6 6294 5981 22 0 0 0 chrX 161441804 161441826 -15532314 + AT_rich Low_complexity Low_complexity 1 22 0 640 270 94 25 chrX 161442257 161442849 -15531291 - MER114 LTR ERV 0 648 7 2456 122 11 0 chrX 161444288 161444648 -15529492 + THE1B LTR MaLR 1 364 0 24 0 0 0 chrX 161445276 161445300 -15528840 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chrX 161445692 161445723 -15528417 + AT_rich Low_complexity Low_complexity 1 31 0 1431 116 49 0 chrX 161446630 161446855 -15527285 + L1PB2 LINE L1 5914 6149 -2 32 26 0 0 chrX 161447191 161447230 -15526910 + AT_rich Low_complexity Low_complexity 1 39 0 235 170 19 0 chrX 161447300 161447353 -15526787 - L1MC4 LINE L1 0 8042 7989 752 138 8 0 chrX 161447358 161447481 -15526659 - L1PA15 LINE L1 0 6165 6042 563 93 0 0 chrX 161447481 161447556 -15526584 - L1PA15 LINE L1 -49 6116 6042 * 2352 141 3 3 chrX 161447541 161447903 -15526237 - L1PA15 LINE L1 -34 6131 5770 3772 125 93 8 chrX 161447929 161448576 -15525564 - L1PA13 LINE L1 -6 6157 5456 435 19 0 0 chrX 161449663 161449715 -15524425 + (TA)n Simple_repeat Simple_repeat 2 53 0 291 246 87 0 chrX 161449889 161449958 -15524182 + LTR54B LTR ERV1 14 88 -410 319 294 222 0 chrX 161450009 161450135 -15524005 + MER57A LTR ERV1 195 348 -55 239 167 21 0 chrX 161450137 161450185 -15523955 + (CTTTG)n Simple_repeat Simple_repeat 4 52 0 339 356 43 24 chrX 161450310 161450518 -15523622 + HAL1 LINE L1 1458 1669 -838 664 299 79 21 chrX 161451078 161451404 -15522736 + LTR16A LTR ERVL 65 450 0 736 303 39 11 chrX 161451404 161451685 -15522455 + HERV16 LTR ERVL 1 289 -4707 264 292 15 0 chrX 161451715 161451780 -15522360 + MER52A LTR ERV1 1 66 -1689 7195 171 63 57 chrX 161452222 161453767 -15520373 + MER52A LTR ERV1 202 1755 0 21 0 0 0 chrX 161454585 161454606 -15519534 + AT_rich Low_complexity Low_complexity 1 21 0 1065 87 0 0 chrX 161455255 161455393 -15518747 + AluSq/x SINE Alu 1 138 -175 4322 244 39 28 chrX 161455394 161456617 -15517523 - L1PA13 LINE L1 -3136 3661 2453 2300 108 0 9 chrX 161456617 161456933 -15517207 + AluSq SINE Alu 1 313 0 4322 244 39 28 chrX 161456933 161457062 -15517078 - L1PA13 LINE L1 -4344 2453 2327 243 103 0 0 chrX 161457062 161457101 -15517039 + (TATTG)n Simple_repeat Simple_repeat 5 43 0 4322 244 39 28 chrX 161457101 161457992 -15516148 - L1PA13 LINE L1 -4470 2327 1283 1452 310 36 38 chrX 161458087 161458664 -15515476 - L1PA13 LINE L1 -5892 895 320 4471 140 18 5 chrX 161458674 161459408 -15514732 + L1PA15 LINE L1 5417 6159 -6 21 0 0 0 chrX 161459644 161459665 -15514475 + AT_rich Low_complexity Low_complexity 1 21 0 1580 247 51 21 chrX 161460254 161460764 -15513376 - LTR27 LTR ERV1 -137 499 3 1181 246 88 0 chrX 161462447 161462744 -15511396 - MER82 DNA MER2_type 0 653 331 562 218 38 8 chrX 161462786 161462919 -15511221 - MER82 DNA MER2_type -515 138 2 231 152 0 0 chrX 161464469 161464515 -15509625 + (CA)n Simple_repeat Simple_repeat 2 47 0 2321 162 18 20 chrX 161465938 161466377 -15507763 + L1MA7 LINE L1 5688 6125 -166 535 197 0 0 chrX 161466480 161466597 -15507543 + L1MA7 LINE L1 6175 6291 0 11181 233 40 39 chrX 161467226 161471298 -15502842 - L1 LINE L1 -2450 4398 209 1939 199 72 106 chrX 161471768 161472422 -15501718 + L1MD2 LINE L1 5602 6233 -9 210 171 0 0 chrX 161472852 161472893 -15501247 + A-rich Low_complexity Low_complexity 3 43 0 212 229 21 0 chrX 161474289 161474337 -15499803 + (TA)n Simple_repeat Simple_repeat 2 50 0 261 305 52 32 chrX 161474692 161474846 -15499294 - L1ME LINE L1 -571 5550 5394 438 334 46 66 chrX 161474937 161475497 -15498643 - L1ME LINE L1 -868 5278 4730 304 319 103 52 chrX 161475645 161475877 -15498263 - L1ME LINE L1 -1838 4308 4065 25 0 0 0 chrX 161475914 161475939 -15498201 + AT_rich Low_complexity Low_complexity 1 25 0 308 325 78 13 chrX 161476106 161476260 -15497880 - L1ME LINE L1 -3574 2572 2409 30 27 0 0 chrX 161476260 161476297 -15497843 + AT_rich Low_complexity Low_complexity 1 37 0 2171 122 0 0 chrX 161476860 161477156 -15496984 - AluSx SINE Alu -16 296 1 335 405 78 6 chrX 161477585 161477906 -15496234 - L1MC/D LINE L1 -2148 5660 5317 2105 157 104 13 chrX 161478975 161479418 -15494722 - MER31A LTR ERV1 0 543 1 1685 184 33 9 chrX 161480158 161480489 -15493651 - L1PA16 LINE L1 -16 6150 5812 2269 135 23 116 chrX 161480491 161481009 -15493131 + L1PA16 LINE L1 5333 5802 -364 743 318 53 46 chrX 161481269 161481684 -15492456 + MLT1K LTR MaLR 158 575 -13 2062 140 18 0 chrX 161482116 161482458 -15491682 - L1PA16 LINE L1 0 6166 5819 220 428 38 13 chrX 161485260 161485419 -15488721 - L3 LINE CR1 -112 1465 1303 29 28 0 0 chrX 161485665 161485701 -15488439 + AT_rich Low_complexity Low_complexity 1 36 0 1858 95 0 0 chrX 161485793 161486034 -15488106 + AluSg1 SINE Alu 39 279 -30 21 36 0 0 chrX 161486038 161486066 -15488074 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chrX 161486181 161486226 -15487914 + AT_rich Low_complexity Low_complexity 1 45 0 342 196 53 45 chrX 161486833 161486966 -15487174 + (CATATA)n Simple_repeat Simple_repeat 2 135 0 6257 107 28 8 chrX 161487069 161488062 -15486078 - L1MA2 LINE L1 0 6304 5292 1105 231 32 21 chrX 161488083 161488365 -15485775 - L1M1 LINE L1 -7268 297 13 1015 240 64 0 chrX 161488510 161488760 -15485380 + L1ME LINE L1 5460 5725 -439 252 230 0 40 chrX 161489642 161489716 -15484424 - MER92A LTR ERV1 0 412 342 9178 185 19 2 chrX 161490413 161492032 -15482108 - ERVL LTR ERVL -1389 4375 2730 239 284 132 74 chrX 161492124 161492314 -15481826 - LTR33A LTR ERVL -265 258 58 3325 23 0 2 chrX 161494406 161494804 -15479336 + L1PA2 LINE L1 5759 6155 0 235 292 31 0 chrX 161495244 161495340 -15478800 - L1MDa LINE L1 -4816 1313 1215 504 233 0 0 chrX 161495439 161495525 -15478615 - Tigger7 DNA MER2_type 0 2587 2502 1117 256 39 4 chrX 161495529 161495787 -15478353 - Tigger7 DNA MER2_type -466 267 1 278 273 80 34 chrX 161495787 161496025 -15478115 - L1MDa LINE L1 -4939 1180 932 4035 143 23 16 chrX 161496125 161496824 -15477316 + L1PA16 LINE L1 5456 6159 -7 213 363 20 10 chrX 161497318 161497420 -15476720 - L2 LINE L2 -596 2718 2616 1158 230 121 44 chrX 161497859 161498198 -15475942 - MLT1A1 LTR MaLR 0 365 1 505 265 137 20 chrX 161498637 161498886 -15475254 - L3 LINE CR1 -513 1064 787 1658 183 13 3 chrX 161499457 161499763 -15474377 + AluJb SINE Alu 1 309 -3 224 224 13 53 chrX 161500519 161500595 -15473545 + A-rich Low_complexity Low_complexity 6 78 0 302 276 51 0 chrX 161500674 161500772 -15473368 + MIR SINE MIR 86 188 -74 395 200 283 0 chrX 161500803 161500948 -15473192 + L1MD2 LINE L1 6162 6347 -12 234 0 0 0 chrX 161500989 161501015 -15473125 + (T)n Simple_repeat Simple_repeat 1 26 0 31 26 0 0 chrX 161501335 161501373 -15472767 + AT_rich Low_complexity Low_complexity 1 38 0 234 0 0 0 chrX 161501405 161501431 -15472709 + (T)n Simple_repeat Simple_repeat 1 26 0 183 270 63 109 chrX 161501731 161501905 -15472235 + L3 LINE CR1 1306 1471 -106 230 268 28 0 chrX 161501916 161501987 -15472153 + L2 LINE L2 3229 3301 -12 195 383 25 0 chrX 161502040 161502121 -15472019 + L3 LINE CR1 1491 1573 -4 229 283 242 0 chrX 161503118 161503217 -15470923 - MIR SINE MIR -73 189 67 1284 299 37 49 chrX 161503219 161503735 -15470405 + L1MEc LINE L1 204 714 -5849 677 150 31 62 chrX 161503735 161503895 -15470245 - L1PA15 LINE L1 -3 6162 6008 1284 299 37 49 chrX 161503895 161503970 -15470170 + L1MEc LINE L1 714 788 -5775 956 190 11 0 chrX 161503974 161504158 -15469982 - MLT1B LTR MaLR -10 380 195 658 146 13 20 chrX 161504192 161504343 -15469797 + CT-rich Low_complexity Low_complexity 3 152 0 478 199 37 68 chrX 161504351 161504459 -15469681 - MLT1B LTR MaLR -234 156 53 1859 219 0 6 chrX 161504459 161504824 -15469316 + MLT1A1 LTR MaLR 3 365 0 478 199 37 68 chrX 161504824 161504876 -15469264 - MLT1B LTR MaLR -337 53 1 25 0 0 0 chrX 161504970 161504995 -15469145 + AT_rich Low_complexity Low_complexity 1 25 0 862 238 22 5 chrX 161505075 161505289 -15468851 + L1MEc LINE L1 800 881 -5503 2487 279 49 59 chrX 161505303 161506548 -15467592 + L1M4 LINE L1 8 1240 -5302 1032 228 46 14 chrX 161506556 161506841 -15467299 + L1M4 LINE L1 1524 1817 -4829 * 3435 233 24 23 chrX 161506814 161507824 -15466316 + L1M4 LINE L1 4715 5725 -919 5097 156 22 16 chrX 161509025 161510027 -15464113 - L1PA16 LINE L1 0 6166 5308 3697 198 3 54 chrX 161510025 161510940 -15463200 + L1PA16 LINE L1 4450 5318 -828 * 2339 159 20 0 chrX 161511123 161511518 -15462622 - MER57A LTR ERV1 0 403 1 285 243 69 49 chrX 161512234 161512378 -15461762 + MER112 DNA MER1_type 18 164 -96 290 183 0 17 chrX 161512800 161512860 -15461280 - AluJb SINE Alu -1 301 243 1131 84 0 0 chrX 161512860 161513003 -15461137 - AluJb SINE Alu -169 143 1 536 29 14 0 chrX 161513127 161513197 -15460943 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 476 253 30 94 chrX 161514293 161514526 -15459614 - MER112 DNA MER1_type -8 252 35 3030 161 7 11 chrX 161514571 161515136 -15459004 + L1MA4 LINE L1 5735 6297 -3 22 0 0 0 chrX 161515202 161515224 -15458916 + AT_rich Low_complexity Low_complexity 1 22 0 213 228 70 0 chrX 161515239 161515296 -15458844 - MIR SINE MIR -31 231 171 299 319 9 26 chrX 161516825 161516938 -15457202 + MER5A DNA MER1_type 7 117 -72 1934 259 113 23 chrX 161517053 161517238 -15456902 + MER20B DNA MER1_type 17 184 -599 1559 196 68 104 chrX 161517238 161517813 -15456327 + MLT2B3 LTR ERVL 1 554 0 1934 259 113 23 chrX 161517813 161518325 -15455815 + MER20B DNA MER1_type 184 777 -6 2548 115 8 3 chrX 161518562 161518935 -15455205 + THE1C LTR MaLR 1 375 0 434 150 88 0 chrX 161518936 161519016 -15455124 + MER20 DNA MER1_type 17 103 -116 4514 182 16 23 chrX 161519797 161519892 -15454248 + L1PB4 LINE L1 4640 4734 -1422 2349 82 0 13 chrX 161519892 161520198 -15453942 - AluY SINE Alu -9 302 1 4514 182 16 23 chrX 161520198 161521268 -15452872 + L1PB4 LINE L1 4734 5798 -358 258 32 0 0 chrX 161521268 161521299 -15452841 + (CA)n Simple_repeat Simple_repeat 1 31 0 4514 182 16 23 chrX 161521299 161521614 -15452526 + L1PB4 LINE L1 5798 6114 -42 239 108 0 0 chrX 161521658 161521695 -15452445 + L1PB4 LINE L1 6115 6151 -5 4701 196 25 18 chrX 161521717 161523179 -15450961 + L1MA7 LINE L1 4812 6290 -1 180 125 0 0 chrX 161523730 161523762 -15450378 + (CA)n Simple_repeat Simple_repeat 1 32 0 833 286 23 10 chrX 161523994 161524295 -15449845 + L1MC4 LINE L1 7586 7890 -152 210 208 0 21 chrX 161524316 161524364 -15449776 + (TTA)n Simple_repeat Simple_repeat 3 49 0 592 319 43 55 chrX 161524379 161524809 -15449331 + LTR16A LTR ERVL 1 435 -15 1627 353 38 7 chrX 161525486 161526215 -15447925 + ERVL LTR ERVL 748 1499 -3497 254 344 109 0 chrX 161526484 161526612 -15447528 + ERVL LTR ERVL 1855 1996 -3658 865 231 19 9 chrX 161526626 161526838 -15447302 - MLT1F1 LTR MaLR 0 567 354 1321 193 35 118 chrX 161526849 161527254 -15446886 - MLT1A2 LTR MaLR 0 374 4 1195 268 70 12 chrX 161527257 161527586 -15446554 - MLT1F1 LTR MaLR -219 348 1 561 340 33 12 chrX 161527628 161527869 -15446271 + ERVL LTR ERVL 2077 2322 -2674 302 353 25 20 chrX 161527910 161528114 -15446026 + ERVL LTR ERVL 2428 2632 -2853 291 391 12 16 chrX 161528269 161528517 -15445623 - HERVL LTR ERVL -1052 4602 4356 * 447 331 47 16 chrX 161528504 161528761 -15445379 + ERVL LTR ERVL 4894 5158 -606 955 273 25 78 chrX 161529132 161529609 -15444531 + LTR16A1 LTR ERVL 5 456 -1 334 264 33 0 chrX 161530128 161530219 -15443921 - MIR3 SINE MIR -7 201 108 1749 184 42 6 chrX 161531157 161531488 -15442652 + MER61A LTR ERV1 1 343 0 2320 153 143 18 chrX 161531490 161531992 -15442148 + MER61A-int LTR ERV1 3 567 -4650 * 23944 98 6 10 chrX 161531975 161535763 -15438377 + MER61A-int LTR ERV1 1399 5217 0 1647 192 43 6 chrX 161535764 161536092 -15438048 + MER61A LTR ERV1 2 341 -2 213 125 0 25 chrX 161537081 161537121 -15437019 + (TATATG)n Simple_repeat Simple_repeat 4 42 0 1877 157 7 26 chrX 161537217 161537523 -15436617 - AluJo SINE Alu -10 302 3 244 324 135 0 chrX 161538376 161538487 -15435653 - MER5A DNA MER1_type -1 188 63 974 243 100 51 chrX 161539985 161540355 -15433785 + L2 LINE L2 2131 2518 -796 824 291 98 37 chrX 161540687 161541310 -15432830 + L2 LINE L2 2649 3313 0 24 32 0 0 chrX 161542142 161542173 -15431967 + AT_rich Low_complexity Low_complexity 1 31 0 483 161 0 0 chrX 161542996 161543083 -15431057 - L1MB1 LINE L1 -4 6164 6078 2562 124 56 7 chrX 161544810 161545238 -15428902 - L1MB1 LINE L1 -3 6165 5717 2056 164 24 3 chrX 161545238 161545610 -15428530 + L1MB1 LINE L1 5325 5704 -464 2132 121 13 0 chrX 161545729 161546027 -15428113 - AluSp SINE Alu -9 304 3 287 296 34 0 chrX 161546431 161546519 -15427621 + MLT1I LTR MaLR 63 153 -256 385 252 181 0 chrX 161547030 161547185 -15426955 - HAL1 LINE L1 -883 1624 1442 24 0 0 0 chrX 161547189 161547213 -15426927 + AT_rich Low_complexity Low_complexity 1 24 0 302 314 65 55 chrX 161547246 161547536 -15426604 - L1MEd LINE L1 -4902 1217 925 25 83 0 0 chrX 161547544 161547604 -15426536 + AT_rich Low_complexity Low_complexity 1 60 0 284 275 11 0 chrX 161547893 161547984 -15426156 + L1ME3 LINE L1 5879 5970 -192 1644 279 92 64 chrX 161548033 161549605 -15424535 - L1M4 LINE L1 -1279 5103 3488 589 257 26 48 chrX 161549651 161549962 -15424178 - L1M4 LINE L1 -4916 1468 1165 12317 209 35 10 chrX 161551260 161553778 -15420362 + ERVL LTR ERVL 1823 4402 -1362 1632 225 23 3 chrX 161553781 161554127 -15420013 + MLT1A1 LTR MaLR 1 353 -12 3392 270 27 9 chrX 161554128 161555179 -15418961 + ERVL LTR ERVL 4355 5457 -197 3191 237 70 3 chrX 161555233 161556139 -15418001 - L1MB7 LINE L1 -28 6156 5188 364 169 0 0 chrX 161556227 161556298 -15417842 - L1PA16 LINE L1 -1 6165 6095 782 256 38 14 chrX 161556298 161556587 -15417553 - L1MB7 LINE L1 -945 5201 4906 373 121 49 30 chrX 161556615 161556713 -15417427 - L1MA5 LINE L1 -34 6266 6173 1562 56 0 15 chrX 161556715 161556911 -15417229 - AluY SINE Alu -9 302 110 1869 78 29 0 chrX 161556912 161557155 -15416985 - THE1A LTR MaLR -72 283 34 11434 99 5 2 chrX 161557155 161558719 -15415421 - THE1A-int LTR MaLR -11 1569 1 2731 76 3 0 chrX 161558719 161559073 -15415067 - THE1A LTR MaLR 0 355 1 1621 180 0 39 chrX 161559114 161559419 -15414721 + AluJb SINE Alu 6 298 -14 227 228 144 24 chrX 161559567 161559734 -15414406 - L1ME4a LINE L1 -44 6077 5891 348 303 45 39 chrX 161560025 161560180 -15413960 - MLT1J LTR MaLR -104 407 252 21 71 0 0 chrX 161561818 161561860 -15412280 + AT_rich Low_complexity Low_complexity 1 42 0 218 200 22 0 chrX 161562271 161562316 -15411824 + CT-rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chrX 161562318 161562349 -15411791 + AT_rich Low_complexity Low_complexity 1 31 0 1396 258 74 37 chrX 161562533 161562995 -15411145 - MLT1D LTR MaLR -3 502 24 281 325 12 44 chrX 161563705 161563865 -15410275 + L2 LINE L2 1903 2057 -1257 508 351 93 34 chrX 161563986 161564482 -15409658 - L2 LINE L2 -781 2533 2009 507 339 59 8 chrX 161564490 161564744 -15409396 + MLT1L LTR MaLR 3 269 -346 376 251 12 80 chrX 161565174 161565337 -15408803 + MER93a LTR ERV1 4 155 -247 9688 124 8 1 chrX 161565337 161566727 -15407413 + MER52-int LTR ERV1 3058 4456 -2635 616 126 0 0 chrX 161566728 161566815 -15407325 - MER52-int LTR ERV1 -2404 4687 4601 345 96 77 0 chrX 161566813 161566865 -15407275 + MER52-int LTR ERV1 4471 4526 -2565 * 1766 91 0 4 chrX 161567096 161567326 -15406814 - AluSg/x SINE Alu -6 306 78 382 273 189 8 chrX 161568038 161568170 -15405970 - MER5A DNA MER1_type -1 188 33 733 309 109 22 chrX 161568584 161568988 -15405152 + L1M4 LINE L1 1273 1711 -5752 2380 268 58 21 chrX 161569005 161569985 -15404155 + L1M4 LINE L1 5420 6435 -1130 439 239 7 0 chrX 161569983 161570121 -15404019 - L1 LINE L1 -2759 3387 3249 * 257 200 27 0 chrX 161570115 161570190 -15403950 + L1M4 LINE L1 3325 3401 -4164 * 1017 103 0 0 chrX 161570291 161570436 -15403704 + L1PA13 LINE L1 6008 6152 -11 228 201 32 4 chrX 161570452 161570514 -15403626 + L1M4 LINE L1 3336 3400 -4165 * 2806 228 25 26 chrX 161570494 161571389 -15402751 + L1M1 LINE L1 3461 4358 -3207 706 253 30 15 chrX 161571389 161571587 -15402553 + MIR SINE MIR 59 259 -3 322 315 28 32 chrX 161571833 161572049 -15402091 - L1MEd LINE L1 -4960 1159 945 413 330 35 65 chrX 161572700 161572930 -15401210 - L2 LINE L2 -2760 554 332 21 0 0 0 chrX 161573501 161573522 -15400618 + AT_rich Low_complexity Low_complexity 1 21 0 211 281 18 0 chrX 161573869 161573926 -15400214 + MIR SINE MIR 97 154 -108 1981 88 0 4 chrX 161574012 161574290 -15399850 + AluY SINE Alu 35 311 0 931 168 16 7 chrX 161574327 161574586 -15399554 - MLT1A1 LTR MaLR 0 365 28 4317 144 1 0 chrX 161574588 161575291 -15398849 - L1PA13 LINE L1 0 6163 5460 2404 115 8 3 chrX 161575291 161575647 -15398493 + MER9 LTR ERVK 1 358 -153 1637 161 10 10 chrX 161575747 161576038 -15398102 + L1P4 LINE L1 1531 1821 -4966 * 10028 196 27 17 chrX 161576014 161578474 -15395666 + L1P4 LINE L1 3260 5615 -1197 288 0 0 0 chrX 161578474 161578506 -15395634 + (CA)n Simple_repeat Simple_repeat 1 32 0 10028 196 27 17 chrX 161578506 161579324 -15394816 + L1P4 LINE L1 5615 6424 -388 255 294 39 0 chrX 161581229 161581331 -15392809 - MER103 DNA DNA -5 161 56 284 164 36 0 chrX 161581390 161581500 -15392640 + (TA)n Simple_repeat Simple_repeat 2 115 0 1498 181 96 0 chrX 161581596 161581877 -15392263 + AluJb SINE Alu 1 308 -4 3051 171 56 0 chrX 161582452 161582652 -15391488 + MER6A DNA MER2_type 17 204 -661 297 0 0 0 chrX 161582652 161582685 -15391455 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 450 0 0 0 chrX 161582684 161582734 -15391406 + (GA)n Simple_repeat Simple_repeat 1 50 0 3051 171 56 0 chrX 161582685 161583090 -15391050 + MER6A DNA MER2_type 204 604 -1 271 333 0 22 chrX 161583476 161583566 -15390574 + MER5B DNA MER1_type 13 100 -78 202 314 35 12 chrX 161583630 161583716 -15390424 - MIR3 SINE MIR -36 172 85 253 231 0 0 chrX 161586982 161587034 -15387106 + MER9 LTR ERVK 460 511 0 11288 147 35 6 chrX 161587034 161587779 -15386361 - L1P4 LINE L1 -703 6116 5394 369 0 0 0 chrX 161587779 161587820 -15386320 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 2038 128 0 0 chrX 161587822 161588103 -15386037 - AluSq SINE Alu -32 281 1 11288 147 35 6 chrX 161588103 161589078 -15385062 - L1P4 LINE L1 -1425 5394 4317 198 0 0 0 chrX 161589078 161589100 -15385040 + (TTG)n Simple_repeat Simple_repeat 3 24 0 11288 147 35 6 chrX 161589100 161589490 -15384650 - L1P4 LINE L1 -2502 4317 3940 7535 209 40 32 chrX 161589487 161591099 -15383041 - L1P4 LINE L1 -5056 1738 106 * 4901 227 14 36 chrX 161591260 161592468 -15381672 - L1PA13 LINE L1 -5303 1484 237 12404 159 11 28 chrX 161592554 161594364 -15379776 - L1M1 LINE L1 -2128 4978 3140 4899 60 2 0 chrX 161594364 161594975 -15379165 + L1PA7 LINE L1 5534 6150 -4 12404 159 11 28 chrX 161594975 161595023 -15379117 - L1M1 LINE L1 -3966 3140 3093 1547 227 59 91 chrX 161595023 161595554 -15378586 + MLT2B3 LTR ERVL 1 514 -40 522 0 0 0 chrX 161595554 161595612 -15378528 + (TA)n Simple_repeat Simple_repeat 2 59 0 1547 227 59 91 chrX 161595612 161595652 -15378488 + MLT2B3 LTR ERVL 514 554 0 12404 159 11 28 chrX 161595652 161596791 -15377349 - L1M1 LINE L1 -4013 3093 1462 288 0 0 0 chrX 161596903 161596935 -15377205 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 333 0 0 0 chrX 161596934 161596971 -15377169 + (GA)n Simple_repeat Simple_repeat 2 38 0 6940 62 21 0 chrX 161596991 161598296 -15375844 - L1PA8 LINE L1 -1 6171 4862 699 99 0 47 chrX 161598296 161598534 -15375606 + (TA)n Simple_repeat Simple_repeat 1 226 0 187 352 110 0 chrX 161598574 161598665 -15375475 + L2 LINE L2 3205 3305 -8 184 311 0 0 chrX 161599676 161599721 -15374419 - L2 LINE L2 -76 3196 3152 1452 174 43 64 chrX 161599776 161600143 -15373997 + L1MB1 LINE L1 5710 6060 -108 944 107 0 7 chrX 161600157 161600297 -15373843 + AluSg/x SINE Alu 163 301 -9 350 160 38 42 chrX 161600350 161600467 -15373673 + L1MB1 LINE L1 6050 6159 -9 242 292 36 36 chrX 161600482 161600619 -15373521 + MIR SINE MIR 83 219 -43 357 24 0 0 chrX 161600718 161600760 -15373380 + (CA)n Simple_repeat Simple_repeat 1 42 0 915 174 37 5 chrX 161601191 161601381 -15372759 + MLT2B1 LTR ERVL 1 196 -324 2372 62 31 0 chrX 161602692 161602983 -15371157 - AluSc SINE Alu -9 300 1 204 83 56 0 chrX 161602985 161603021 -15371119 + T-rich Low_complexity Low_complexity 4 41 0 541 273 59 68 chrX 161603338 161603777 -15370363 - MLT1J LTR MaLR -6 505 71 253 75 38 19 chrX 161603810 161603863 -15370277 + A-rich Low_complexity Low_complexity 2 55 0 885 142 0 0 chrX 161603995 161604122 -15370018 + AluSx SINE Alu 1 127 -186 251 89 178 0 chrX 161604125 161604170 -15369970 - MADE1 DNA Mariner -24 56 4 1107 157 22 0 chrX 161604170 161604348 -15369792 + AluSx SINE Alu 123 304 -8 2276 84 20 0 chrX 161604357 161604655 -15369485 + AluSp SINE Alu 1 304 -9 249 325 163 25 chrX 161604898 161605224 -15368916 - L1MDa LINE L1 -2277 4263 3893 21 57 0 0 chrX 161605271 161605306 -15368834 + AT_rich Low_complexity Low_complexity 1 35 0 308 282 101 0 chrX 161605346 161605495 -15368645 - L1MDa LINE L1 -2842 3698 3535 653 332 75 18 chrX 161605498 161605953 -15368187 - L1MDa LINE L1 -3304 3236 2756 1515 135 0 0 chrX 161605968 161606213 -15367927 - L1MA2 LINE L1 0 6304 6060 302 250 72 29 chrX 161606326 161606534 -15367606 - L1MDa LINE L1 -4029 2692 2476 613 287 42 76 chrX 161606801 161607448 -15366692 - L1MDa LINE L1 -4577 2144 1488 29 0 0 0 chrX 161607451 161607480 -15366660 + AT_rich Low_complexity Low_complexity 1 29 0 5834 117 28 22 chrX 161607480 161607708 -15366432 - L1MA3 LINE L1 0 7724 7499 1793 176 10 0 chrX 161607708 161608015 -15366125 - AluJb SINE Alu -2 310 1 5834 117 28 22 chrX 161608015 161608808 -15365332 - L1MA3 LINE L1 -225 7499 6697 * 10566 191 20 31 chrX 161608797 161609696 -15364444 - L1MA3 LINE L1 -1293 6272 5365 341 102 0 0 chrX 161609696 161609755 -15364385 - Alu SINE Alu 0 300 242 10566 191 20 31 chrX 161609755 161611249 -15362891 - L1MA3 LINE L1 -2200 5365 3848 2063 165 49 11 chrX 161611249 161611619 -15362521 + MSTA LTR MaLR 1 384 -44 7225 129 30 13 chrX 161611745 161613092 -15361048 - L1MA3 LINE L1 -3813 3752 2381 1223 189 13 8 chrX 161613110 161613348 -15360792 - L1ME LINE L1 -503 5663 5425 1201 165 36 0 chrX 161613395 161613643 -15360497 - L1MA5A LINE L1 -4 6293 6037 971 134 0 18 chrX 161613665 161613836 -15360304 - L1PA13 LINE L1 0 6163 5996 322 225 18 0 chrX 161613836 161613947 -15360193 + (TA)n Simple_repeat Simple_repeat 2 114 0 293 244 26 0 chrX 161614079 161614194 -15359946 + (TA)n Simple_repeat Simple_repeat 2 119 0 25 51 0 0 chrX 161614406 161614445 -15359695 + AT_rich Low_complexity Low_complexity 1 39 0 186 311 96 22 chrX 161615283 161615418 -15358722 - L2 LINE L2 -8 3305 3161 223 293 80 0 chrX 161616020 161616095 -15358045 - L2 LINE L2 -542 2772 2692 1542 210 68 28 chrX 161616159 161616250 -15357890 - L1MCa LINE L1 -3652 2774 2688 2627 141 105 32 chrX 161616250 161616776 -15357364 - LTR6A LTR ERV1 0 564 1 1542 210 68 28 chrX 161616776 161617921 -15356219 - L1MCa LINE L1 -3738 2688 323 2744 261 41 13 chrX 161617924 161618235 -15355905 + L1MC/D LINE L1 4019 4320 -1859 2110 113 27 10 chrX 161618235 161618536 -15355604 - AluSc SINE Alu -3 306 1 2744 261 41 13 chrX 161618536 161619568 -15354572 + L1MC/D LINE L1 4320 5436 -743 2215 200 26 79 chrX 161619569 161620148 -15353992 + MLT2B3 LTR ERVL 1 548 -6 864 177 12 0 chrX 161620152 161620316 -15353824 + L1MC/D LINE L1 5435 5600 -733 706 169 0 0 chrX 161620317 161620441 -15353699 + L1MC/D LINE L1 5695 5818 -526 9709 195 32 6 chrX 161620559 161622749 -15351391 + L1 LINE L1 2630 4877 -1269 5351 181 12 13 chrX 161622757 161623018 -15351122 + L1PB3 LINE L1 4137 4397 -1757 203 77 0 26 chrX 161623018 161623057 -15351083 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 5351 181 12 13 chrX 161623057 161623189 -15350951 + L1PB3 LINE L1 4397 4528 -1626 5194 57 21 37 chrX 161623189 161623888 -15350252 - LTR12 LTR ERV1 0 688 1 5351 181 12 13 chrX 161623888 161625508 -15348632 + L1PB3 LINE L1 4528 6148 -6 3837 249 66 55 chrX 161625492 161627357 -15346783 + L1M4 LINE L1 2466 4350 -1796 * 2118 258 101 23 chrX 161627712 161628448 -15345692 - L1M3e LINE L1 -6227 803 11 181 313 30 30 chrX 161628456 161628523 -15345617 - MIR SINE MIR -195 67 1 180 111 0 0 chrX 161630462 161630489 -15343651 + (TATG)n Simple_repeat Simple_repeat 2 28 0 6897 64 16 0 chrX 161630490 161631671 -15342469 - L1PA7 LINE L1 -11 6143 4954 14178 89 6 9 chrX 161631671 161633740 -15340400 + L1PA7 LINE L1 2881 4944 -1202 25 51 0 0 chrX 161634329 161634368 -15339772 + AT_rich Low_complexity Low_complexity 1 39 0 561 178 69 0 chrX 161634893 161634994 -15339146 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 4098 147 14 20 chrX 161634984 161635741 -15338399 + Tigger3(Golem) DNA MER2_type 2276 3028 -1 2128 125 0 0 chrX 161636793 161637089 -15337051 + AluSg SINE Alu 1 296 -14 1936 133 3 10 chrX 161638361 161638662 -15335478 - AluJb SINE Alu -13 299 1 2407 250 87 20 chrX 161641500 161642712 -15331428 - L1ME LINE L1 -704 5462 4165 25 0 0 0 chrX 161642812 161642837 -15331303 + AT_rich Low_complexity Low_complexity 1 25 0 220 250 36 131 chrX 161643026 161643194 -15330946 + MIR SINE MIR 108 259 -3 7340 44 0 0 chrX 161643409 161644414 -15329726 - L1PA5 LINE L1 -1 6153 5149 240 194 48 0 chrX 161644697 161644759 -15329381 + L1M4 LINE L1 5246 5310 -836 3238 203 106 75 chrX 161644787 161645309 -15328831 + L1MC3 LINE L1 6564 7068 -717 315 186 17 0 chrX 161645309 161645368 -15328772 + MLT1F1 LTR MaLR 35 94 -473 3238 203 106 75 chrX 161645368 161645972 -15328168 + L1MC3 LINE L1 7068 7785 0 180 0 0 0 chrX 161646403 161646423 -15327717 + (A)n Simple_repeat Simple_repeat 1 20 0 1802 164 81 9 chrX 161646981 161647329 -15326811 + MLT2C2 LTR ERVL 1 373 -91 344 163 62 25 chrX 161648345 161648425 -15325715 - L1PA16 LINE L1 0 6166 6084 462 276 0 0 chrX 161648506 161648604 -15325536 - Tigger7 DNA MER2_type -1 2486 2389 * 1216 220 68 0 chrX 161648602 161648852 -15325288 - Tigger7 DNA MER2_type -466 267 1 25 51 0 0 chrX 161650149 161650188 -15323952 + AT_rich Low_complexity Low_complexity 1 39 0 189 74 0 0 chrX 161650270 161650297 -15323843 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1768 170 4 0 chrX 161650303 161650579 -15323561 - AluJb SINE Alu -34 278 2 1831 169 7 10 chrX 161651643 161651945 -15322195 + AluJb SINE Alu 3 303 -9 599 340 0 0 chrX 161652112 161652268 -15321872 + L2 LINE L2 3117 3272 0 476 298 19 74 chrX 161652529 161652838 -15321302 - LTR16A LTR ERVL -140 310 19 1132 213 34 47 chrX 161653262 161653615 -15320525 + L1MC4 LINE L1 5938 6249 -110 249 254 0 0 chrX 161653616 161653679 -15320461 + L1MD1 LINE L1 6131 6193 -49 310 312 158 23 chrX 161654074 161654289 -15319851 - MIR SINE MIR 0 262 19 650 326 129 13 chrX 161656820 161657206 -15316934 - L3 LINE CR1 -78 1499 1069 1303 243 160 36 chrX 161658237 161658686 -15315454 - MLT1D LTR MaLR 0 505 1 1536 258 13 12 chrX 161659596 161660132 -15314008 + MLT2F LTR ERVL 3 584 -79 561 283 34 115 chrX 161660196 161660553 -15313587 + MLT1F-int LTR MaLR 1020 1347 -24 938 239 117 82 chrX 161660557 161661079 -15313061 + MLT1F LTR MaLR 3 542 0 1663 161 65 0 chrX 161661404 161661683 -15312457 + AluSx SINE Alu 1 297 -15 212 239 0 0 chrX 161661720 161661787 -15312353 + T-rich Low_complexity Low_complexity 1 67 0 8009 170 14 5 chrX 161661788 161664648 -15309492 - L1MA2 LINE L1 0 7723 4832 2384 138 5 8 chrX 161664648 161665024 -15309116 - THE1C LTR MaLR 0 375 1 8031 164 30 34 chrX 161665032 161666608 -15307532 - THE1C-int LTR MaLR -8 1572 3 2180 128 2 60 chrX 161666610 161667008 -15307132 - THE1C LTR MaLR 0 375 1 9893 171 44 7 chrX 161667008 161669949 -15304191 - L1MA2 LINE L1 -2729 4836 1784 22 35 0 0 chrX 161669999 161670028 -15304112 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chrX 161670386 161670406 -15303734 + (TTG)n Simple_repeat Simple_repeat 2 21 0 212 261 92 42 chrX 161670955 161671074 -15303066 - L3b LINE CR1 -149 1434 1310 387 0 0 0 chrX 161671928 161671971 -15302169 + (ATATG)n Simple_repeat Simple_repeat 2 44 0 26 0 0 0 chrX 161672416 161672442 -15301698 + AT_rich Low_complexity Low_complexity 1 26 0 815 168 56 25 chrX 161672595 161672792 -15301348 - MER3 DNA MER1_type -2 207 5 1028 314 63 56 chrX 161673132 161674083 -15300057 + L2 LINE L2 2336 3305 -8 626 245 42 10 chrX 161674304 161674496 -15299644 + LTR16B LTR ERVL 265 462 -2 2460 45 7 0 chrX 161674594 161674885 -15299255 - AluY SINE Alu -18 293 1 396 0 0 0 chrX 161674911 161674955 -15299185 + (TG)n Simple_repeat Simple_repeat 2 45 0 224 268 144 10 chrX 161675883 161675980 -15298160 - L2 LINE L2 0 3272 3163 1322 147 111 7 chrX 161676006 161676285 -15297855 + L1MA4 LINE L1 5986 6293 -7 2593 262 84 28 chrX 161678016 161679741 -15294399 - L1ME LINE L1 -1803 4277 2417 2210 211 24 9 chrX 161679741 161680201 -15293939 - MLT1C LTR MaLR 0 467 1 344 231 0 0 chrX 161680201 161680279 -15293861 - L1ME LINE L1 -3663 2417 2340 987 294 86 64 chrX 161680305 161680686 -15293454 - L1ME LINE L1 -4147 2114 1743 1357 193 43 55 chrX 161680686 161681033 -15293107 + MER2 DNA MER2_type 2 344 0 987 294 86 64 chrX 161681033 161681791 -15292349 - L1ME LINE L1 -4518 1743 860 2199 177 11 13 chrX 161681791 161682243 -15291897 - L1MA5 LINE L1 -6 6294 5844 987 294 86 64 chrX 161682243 161682583 -15291557 - L1ME LINE L1 -5401 860 529 310 305 42 91 chrX 161682662 161682993 -15291147 - L1ME LINE L1 -5695 375 61 574 245 27 7 chrX 161683169 161683316 -15290824 - MIR SINE MIR -74 188 39 2589 52 0 0 chrX 161683793 161684103 -15290037 - AluY SINE Alu -1 310 1 684 183 0 24 chrX 161684391 161684517 -15289623 + FLAM_C SINE Alu 1 123 -10 1377 171 43 7 chrX 161684649 161684930 -15289210 - L1MA7 LINE L1 -1 6290 6000 4794 233 69 62 chrX 161684941 161685096 -15289044 - L1MC4a LINE L1 -392 7416 7264 198 0 0 0 chrX 161685096 161685118 -15289022 + (TTTG)n Simple_repeat Simple_repeat 4 25 0 4794 233 69 62 chrX 161685118 161685703 -15288437 - L1MC4a LINE L1 -544 7264 6685 369 0 0 0 chrX 161685703 161685744 -15288396 + (TG)n Simple_repeat Simple_repeat 2 42 0 4794 233 69 62 chrX 161685744 161686449 -15287691 - L1MC4a LINE L1 -1123 6685 5986 468 0 0 0 chrX 161686449 161686501 -15287639 + (TC)n Simple_repeat Simple_repeat 2 53 0 333 0 0 0 chrX 161686500 161686537 -15287603 + (TA)n Simple_repeat Simple_repeat 1 37 0 * 4794 233 69 62 chrX 161686501 161686924 -15287216 - L1MC4a LINE L1 -1822 5986 5569 307 283 0 0 chrX 161687112 161687172 -15286968 + Tigger3(Golem) DNA MER2_type 1 60 -2969 774 151 36 0 chrX 161687175 161687314 -15286826 + Tigger3(Golem) DNA MER2_type 2530 2673 -356 218 200 89 0 chrX 161688800 161688845 -15285295 - L2 LINE L2 -12 3260 3212 758 136 0 8 chrX 161688944 161689069 -15285071 + L1MA2 LINE L1 6181 6304 0 8702 193 27 17 chrX 161689212 161691466 -15282674 + L1PA15 LINE L1 3380 5654 -511 2411 115 49 42 chrX 161691466 161691891 -15282249 + MSTA LTR MaLR 1 428 0 510 146 0 0 chrX 161691891 161691973 -15282167 + MSTA-int LTR MaLR 1 82 -1569 1268 189 50 44 chrX 161692108 161692405 -15281735 + MLT2B3 LTR ERVL 251 549 -5 3069 150 6 4 chrX 161692405 161692906 -15281234 + L1PA15 LINE L1 5646 6147 -18 1879 189 14 3 chrX 161693218 161693467 -15280673 + MER47A DNA MER2_type 4 260 -2063 2259 79 3 0 chrX 161693467 161693759 -15280381 + AluSx SINE Alu 1 293 -19 1879 189 14 3 chrX 161693759 161693868 -15280272 + MER47A DNA MER2_type 260 366 0 230 316 63 0 chrX 161694031 161694110 -15280030 - MIR SINE MIR -113 149 66 373 235 0 0 chrX 161694510 161694591 -15279549 + MIR SINE MIR 100 180 -82 882 277 55 42 chrX 161695631 161696016 -15278124 - MLT1H LTR MaLR -169 386 5 368 288 74 94 chrX 161696653 161696812 -15277328 - MLT1I LTR MaLR -10 399 238 1988 175 78 10 chrX 161696812 161697211 -15276929 - MSTB LTR MaLR 0 426 1 368 288 74 94 chrX 161697211 161697457 -15276683 - MLT1I LTR MaLR -171 238 2 180 416 26 0 chrX 161700060 161700137 -15274003 - L2 LINE L2 -17 3255 3177 959 245 44 44 chrX 161701029 161701392 -15272748 + LTR37A LTR ERV1 26 388 -38 3691 165 95 29 chrX 161702223 161703133 -15271007 - MER11C LTR ERVK -4 1067 1 22 35 0 0 chrX 161703416 161703445 -15270695 + AT_rich Low_complexity Low_complexity 1 29 0 212 260 0 0 chrX 161704467 161704517 -15269623 + (CATA)n Simple_repeat Simple_repeat 1 50 0 531 232 38 81 chrX 161704726 161704837 -15269303 - L1ME2 LINE L1 0 6164 6065 2159 208 51 35 chrX 161704837 161705461 -15268679 + MER92B LTR ERV1 1 634 -2 531 232 38 81 chrX 161705461 161705560 -15268580 - L1ME2 LINE L1 -99 6065 5963 345 216 11 68 chrX 161705675 161705763 -15268377 - MER20 DNA MER1_type -16 203 121 203 119 34 68 chrX 161706150 161706209 -15267931 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 348 80 0 0 chrX 161706210 161706260 -15267880 - L1PA10 LINE L1 -4 6164 6115 413 286 70 9 chrX 161707577 161707804 -15266336 - MER114 LTR ERV -46 602 362 4507 184 21 25 chrX 161707805 161709154 -15264986 - L1PB4 LINE L1 -23 6133 4784 202 100 0 0 chrX 161710826 161710856 -15263284 + L2 LINE L2 3284 3313 0 456 273 91 92 chrX 161711182 161711481 -15262659 - MLT1G3 LTR MaLR -247 308 4 257 326 71 0 chrX 161711582 161711680 -15262460 - MIR3 SINE MIR -46 162 58 23 33 0 0 chrX 161714569 161714599 -15259541 + AT_rich Low_complexity Low_complexity 1 30 0 399 341 80 0 chrX 161714892 161715118 -15259022 - MLT1L LTR MaLR -229 386 143 2140 138 0 0 chrX 161716256 161716560 -15257580 + AluSx SINE Alu 1 304 -8 576 112 34 0 chrX 161717430 161717519 -15256621 + MER34B LTR ERV1 303 394 -171 * 690 128 37 0 chrX 161717517 161717626 -15256514 - MER34B LTR ERV1 -452 113 1 327 113 0 0 chrX 161717962 161718015 -15256125 + (CAA)n Simple_repeat Simple_repeat 2 54 0 292 256 364 11 chrX 161718448 161718624 -15255516 - MIR SINE MIR 0 262 25 545 269 51 30 chrX 161719060 161719257 -15254883 + MLT1I LTR MaLR 37 237 -172 437 256 0 50 chrX 161719517 161719638 -15254502 + L2 LINE L2 3193 3307 -6 31 68 0 0 chrX 161720013 161720072 -15254068 + AT_rich Low_complexity Low_complexity 1 59 0 788 287 94 4 chrX 161720993 161721247 -15252893 - LTR16A LTR ERVL -2 448 172 501 248 90 110 chrX 161721548 161722084 -15252056 - L1MC4a LINE L1 -1971 5837 5313 273 264 0 11 chrX 161722335 161722422 -15251718 - LTR33A LTR ERVL -9 514 429 261 352 24 8 chrX 161723182 161723307 -15250833 + MIR3 SINE MIR 82 208 0 360 310 19 26 chrX 161723420 161723575 -15250565 - MER5A DNA MER1_type -1 188 35 285 313 73 40 chrX 161723442 161723592 -15250548 + MER5A DNA MER1_type 35 189 0 * 821 180 0 64 chrX 161723912 161724084 -15250056 + FRAM SINE Alu 1 161 -5 32 43 0 0 chrX 161724582 161724628 -15249512 + AT_rich Low_complexity Low_complexity 1 46 0 211 303 49 49 chrX 161724939 161725061 -15249079 + L2 LINE L2 1967 2088 -1226 1771 259 99 20 chrX 161725071 161725616 -15248524 - MLT1E LTR MaLR -5 588 1 383 315 95 25 chrX 161725960 161726370 -15247770 + L1MC/D LINE L1 4192 4631 -1515 1416 174 37 4 chrX 161726460 161726733 -15247407 + AluJb SINE Alu 35 315 0 376 257 19 9 chrX 161727134 161727239 -15246901 + L1MC/D LINE L1 5419 5524 -2284 226 288 0 0 chrX 161727244 161727303 -15246837 - Tigger5 DNA MER2_type 0 2323 2265 * 291 220 0 0 chrX 161727257 161727307 -15246833 + Tigger5 DNA MER2_type 2271 2320 -3 * 361 238 0 25 chrX 161727307 161727386 -15246754 - Tigger5 DNA MER2_type -2245 78 2 250 314 13 65 chrX 161727573 161727726 -15246414 + L2 LINE L2 2915 3059 -213 381 227 21 21 chrX 161728125 161728222 -15245918 - LTR65 LTR ERV1 -6 663 567 314 310 78 0 chrX 161728321 161728463 -15245677 - LTR65 LTR ERV1 -499 170 18 232 353 91 21 chrX 161728569 161728756 -15245384 + MIR SINE MIR 47 246 -16 377 296 10 0 chrX 161729425 161729523 -15244617 - L2 LINE L2 -14 3299 3201 320 328 76 25 chrX 161730484 161730682 -15243458 + HAL1 LINE L1 1106 1313 -1194 248 244 47 71 chrX 161730765 161730892 -15243248 + HAL1b LINE L1 286 409 -939 228 200 46 15 chrX 161731372 161731437 -15242703 + L1PA8A LINE L1 5673 5739 -392 234 312 43 14 chrX 161731441 161731579 -15242561 + L1MC/D LINE L1 5765 5906 -1902 195 351 113 9 chrX 161732032 161732254 -15241886 - MIR SINE MIR -15 247 3 2013 94 0 4 chrX 161732651 161732928 -15241212 + AluSx SINE Alu 1 276 -36 197 33 33 0 chrX 161732939 161732969 -15241171 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1043 196 15 53 chrX 161733231 161733497 -15240643 - L1MA10 LINE L1 -124 6210 5955 2148 158 7 22 chrX 161733695 161734099 -15240041 + L1MA7 LINE L1 5894 6291 0 740 294 35 59 chrX 161734479 161734901 -15239239 + MER90 LTR ERV1 148 559 -16 23 0 0 0 chrX 161734913 161734936 -15239204 + AT_rich Low_complexity Low_complexity 1 23 0 363 250 42 0 chrX 161736569 161736665 -15237475 - MLT1I LTR MaLR 0 409 310 492 234 90 14 chrX 161736804 161736949 -15237191 - MLT1I LTR MaLR -253 156 1 322 326 69 7 chrX 161737892 161738036 -15236104 - L1M4 LINE L1 -2250 3896 3744 26 30 0 0 chrX 161739048 161739081 -15235059 + AT_rich Low_complexity Low_complexity 1 33 0 268 367 72 34 chrX 161740096 161740360 -15233780 + L2 LINE L2 2596 2869 -445 398 265 83 4 chrX 161740437 161740574 -15233566 - L1MC4 LINE L1 -852 7026 6814 293 675 0 0 chrX 161740752 161740903 -15233237 + A-rich Low_complexity Low_complexity 1 151 0 211 361 128 15 chrX 161741071 161741345 -15232795 + L2 LINE L2 2483 2787 -527 186 43 0 0 chrX 161741918 161741941 -15232199 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 3615 222 9 1 chrX 161741947 161742754 -15231386 + L1 LINE L1 2213 3025 -3121 1426 114 0 64 chrX 161742754 161742974 -15231166 - AluSc SINE Alu -83 226 21 23 54 0 0 chrX 161744211 161744248 -15229892 + AT_rich Low_complexity Low_complexity 1 37 0 1525 198 13 29 chrX 161744444 161744758 -15229382 + AluJo SINE Alu 2 310 -2 180 77 0 0 chrX 161745076 161745102 -15229038 + (CTATT)n Simple_repeat Simple_repeat 3 28 0 290 258 40 16 chrX 161745566 161745690 -15228450 - L1ME LINE L1 -387 5775 5649 697 226 16 37 chrX 161745695 161745885 -15228255 + MER3 DNA MER1_type 10 195 -14 348 325 39 55 chrX 161746561 161746872 -15227268 + ERVL LTR ERVL 1014 1319 -4445 4015 206 51 96 chrX 161746950 161747952 -15226188 - Tigger3b DNA MER2_type -1 1230 274 531 208 10 0 chrX 161747950 161748051 -15226089 - Tigger3b DNA MER2_type -1129 102 1 * 270 330 89 11 chrX 161748059 161748250 -15225890 + ERVL LTR ERVL 1265 1470 -4015 582 327 67 14 chrX 161748338 161748792 -15225348 + ERVL LTR ERVL 1654 2135 -3350 556 314 80 33 chrX 161748824 161749333 -15224807 + ERVL LTR ERVL 2252 2772 -2713 670 301 67 51 chrX 161749368 161749893 -15224247 + ERVL LTR ERVL 4995 5527 -237 184 115 0 0 chrX 161751249 161751275 -15222865 - MER5A DNA MER1_type -118 71 46 180 0 0 0 chrX 161751991 161752011 -15222129 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 186 284 49 49 chrX 161752051 161752132 -15222008 - MIR SINE MIR -110 152 72 367 306 18 9 chrX 161753509 161753620 -15220520 + MLT1L LTR MaLR 164 275 -340 991 184 92 38 chrX 161753632 161753871 -15220269 - AluJo SINE Alu -19 293 42 467 248 0 45 chrX 161754165 161754298 -15219842 - L2 LINE L2 0 3313 3187 325 262 19 48 chrX 161754514 161754617 -15219523 + LTR16C LTR ERVL 153 252 -239 645 231 26 19 chrX 161754651 161754807 -15219333 + LTR16C LTR ERVL 333 489 -2 203 260 0 0 chrX 161754926 161754976 -15219164 + CT-rich Low_complexity Low_complexity 1 50 0 186 43 0 0 chrX 161755271 161755294 -15218846 + (TTTTTA)n Simple_repeat Simple_repeat 1 23 0 461 337 51 39 chrX 161758134 161758490 -15215650 - MLT1I LTR MaLR -49 360 1 236 311 0 14 chrX 161758988 161759062 -15215078 - MIR SINE MIR -18 244 172 1709 151 0 4 chrX 161760505 161760757 -15213383 + AluSq SINE Alu 1 251 -62 371 308 34 0 chrX 161760877 161760994 -15213146 + MIR SINE MIR 114 234 -28 2543 105 16 8 chrX 161761021 161761393 -15212747 + THE1C LTR MaLR 1 375 0 9714 124 31 24 chrX 161761393 161762962 -15211178 + THE1C-int LTR MaLR 1 1580 0 2684 103 3 11 chrX 161762962 161763340 -15210800 + THE1C LTR MaLR 1 375 0 424 345 30 20 chrX 161765434 161765637 -15208503 - MIR SINE MIR -12 250 46 443 322 99 19 chrX 161765804 161766127 -15208013 + LTR33A LTR ERVL 151 499 -24 24 32 0 0 chrX 161766149 161766180 -15207960 + AT_rich Low_complexity Low_complexity 1 31 0 2367 174 47 41 chrX 161766417 161766928 -15207212 - MER67D LTR ERV1 0 514 1 182 270 95 27 chrX 161767587 161767661 -15206479 - MIR SINE MIR -114 94 16 24 53 0 0 chrX 161768277 161768315 -15205825 + AT_rich Low_complexity Low_complexity 1 38 0 2356 59 0 7 chrX 161768863 161769204 -15204936 - AluY SINE Alu 0 339 1 445 349 54 15 chrX 161769643 161769904 -15204236 - L2 LINE L2 -779 2535 2265 2381 205 47 2 chrX 161769913 161770266 -15203874 + MER6 DNA MER2_type 1 382 -483 225 0 0 0 chrX 161770266 161770291 -15203849 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 2381 205 47 2 chrX 161770291 161770405 -15203735 + MER6 DNA MER2_type 382 489 -376 1106 319 72 60 chrX 161771116 161771758 -15202382 - ERVL LTR ERVL -2883 2881 2221 3432 187 9 34 chrX 161771758 161772516 -15201624 - L1MB3 LINE L1 -1 6182 5444 1106 319 72 60 chrX 161772516 161772862 -15201278 - ERVL LTR ERVL -3543 2221 1881 2358 95 0 0 chrX 161772869 161773173 -15200967 - AluSg1 SINE Alu -5 304 1 762 104 0 0 chrX 161773174 161773280 -15200860 - MER61E LTR ERV1 -123 446 341 362 208 37 59 chrX 161773332 161773450 -15200690 - MER61E LTR ERV1 -380 189 89 604 162 19 20 chrX 161773453 161773594 -15200546 - LTR25 LTR ERV1 -438 356 103 414 182 0 132 chrX 161773585 161773706 -15200434 - MER61E LTR ERV1 -462 107 3 * 366 322 62 22 chrX 161774659 161774767 -15199373 - LTR33A LTR ERVL -236 287 185 1793 148 10 23 chrX 161774767 161775072 -15199068 + AluJo SINE Alu 1 301 -11 366 322 62 22 chrX 161775072 161775190 -15198950 - LTR33A LTR ERVL -338 185 52 340 364 105 34 chrX 161775395 161775956 -15198184 + L2 LINE L2 987 1587 -1727 22 0 0 0 chrX 161775962 161775984 -15198156 + AT_rich Low_complexity Low_complexity 1 22 0 2181 116 3 25 chrX 161776878 161777198 -15196942 - AluSp SINE Alu 0 313 1 616 199 58 12 chrX 161777268 161777439 -15196701 + L1M4 LINE L1 5121 5299 -847 206 244 0 0 chrX 161777501 161777546 -15196594 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 742 326 63 66 chrX 161779347 161780088 -15194052 - L2 LINE L2 -57 3256 2508 339 25 0 0 chrX 161780121 161780161 -15193979 + (TG)n Simple_repeat Simple_repeat 1 40 0 360 0 0 0 chrX 161780261 161780301 -15193839 + (TG)n Simple_repeat Simple_repeat 2 41 0 2498 43 40 0 chrX 161780415 161780714 -15193426 + AluY SINE Alu 1 311 0 339 113 0 0 chrX 161780835 161780888 -15193252 + (A)n Simple_repeat Simple_repeat 1 53 0 510 90 0 0 chrX 161780987 161781054 -15193086 - Alu SINE Alu -19 293 227 236 340 47 9 chrX 161781068 161781174 -15192966 + MIR3 SINE MIR 93 202 -6 269 285 49 21 chrX 161782442 161782586 -15191554 - L1M4 LINE L1 -325 5853 5706 288 333 54 24 chrX 161782784 161783193 -15190947 - L1M4 LINE L1 -977 5169 4749 1564 180 0 22 chrX 161783302 161783580 -15190560 + MLT2D LTR ERVL 20 291 -123 1016 202 26 13 chrX 161783580 161783808 -15190332 - L1M4 LINE L1 -1208 4938 4708 23 0 0 0 chrX 161783825 161783848 -15190292 + AT_rich Low_complexity Low_complexity 1 23 0 325 256 80 15 chrX 161784082 161784219 -15189921 + L1MEc LINE L1 2069 2214 -4182 269 270 60 0 chrX 161784236 161784336 -15189804 + L1MEc LINE L1 2202 2307 -3910 444 304 89 28 chrX 161784340 161784979 -15189161 + L1MEc LINE L1 3171 3848 -2367 888 58 25 0 chrX 161785214 161785334 -15188806 - L1P3 LINE L1 -497 5675 5553 * 2180 43 7 0 chrX 161785329 161785608 -15188532 + L1P3 LINE L1 5254 5534 -620 21301 45 48 3 chrX 161785934 161788653 -15185487 + L1P LINE L1 1 2841 -3305 477 300 57 10 chrX 161788753 161789050 -15185090 + L1MEc LINE L1 4194 4504 -1711 572 314 80 42 chrX 161789134 161789659 -15184481 + L1MEc LINE L1 4882 5426 -789 938 47 86 0 chrX 161789818 161789946 -15184194 + MER85 DNA T2_type 1 139 0 2194 85 4 0 chrX 161790179 161790460 -15183680 + AluSx SINE Alu 1 282 -30 3836 166 43 6 chrX 161791543 161792580 -15181560 + L1P4 LINE L1 4493 5560 -606 8926 28 4 3 chrX 161792683 161793762 -15180378 + L1PA2 LINE L1 3766 4845 -1301 5639 76 4 10 chrX 161793777 161794636 -15179504 + L1PA2 LINE L1 5254 6106 -48 1439 104 9 0 chrX 161794663 161794884 -15179256 + L1MA2 LINE L1 6082 6304 0 3917 125 8 9 chrX 161794951 161795585 -15178555 + L1PB2 LINE L1 5516 6148 -3 2521 42 3 10 chrX 161797328 161797639 -15176501 - AluY SINE Alu -2 309 1 1333 94 40 0 chrX 161798297 161798498 -15175642 - L1PA10 LINE L1 -9 6159 5951 2186 77 70 6 chrX 161798498 161798864 -15175276 + LTR7 LTR ERV1 1 450 0 630 85 32 0 chrX 161798864 161798958 -15175182 - L1PA10 LINE L1 -213 5955 5859 2118 104 11 0 chrX 161799065 161799352 -15174788 - AluSc SINE Alu -19 290 1 21 36 0 0 chrX 161799412 161799440 -15174700 + AT_rich Low_complexity Low_complexity 1 28 0 1200 164 0 20 chrX 161799751 161799946 -15174194 + Tigger4(Zombi) DNA MER2_type 1 191 -2540 * 3862 147 30 3 chrX 161799929 161800595 -15173545 + Tigger4(Zombi) DNA MER2_type 2048 2731 0 1274 233 58 16 chrX 161801354 161801784 -15172356 - L1MEc LINE L1 -5286 1110 663 22 56 0 0 chrX 161801813 161801849 -15172291 + AT_rich Low_complexity Low_complexity 1 36 0 773 171 0 0 chrX 162002188 162002305 -14971835 + FLAM_C SINE Alu 2 118 -25 30 0 0 0 chrX 162002541 162002571 -14971569 + AT_rich Low_complexity Low_complexity 1 30 0 233 323 10 21 chrX 162003813 162003909 -14970231 + L2 LINE L2 1232 1326 -1988 623 190 71 5 chrX 162004335 162004519 -14969621 + L1MEc LINE L1 2172 2367 -4029 2036 128 47 37 chrX 162004523 162004905 -14969235 - L1MA9 LINE L1 -1 6311 5926 1015 157 11 5 chrX 162004905 162005096 -14969044 + L1M2 LINE L1 5455 5646 -666 2994 204 51 92 chrX 162005175 162005748 -14968392 + L1MEc LINE L1 2344 2939 -3276 2092 153 103 41 chrX 162005748 162006186 -14967954 - MLT1C LTR MaLR -2 465 1 2994 204 51 92 chrX 162006186 162006879 -14967261 + L1MEc LINE L1 2939 3558 -2657 263 356 31 62 chrX 162007070 162007307 -14966833 + MLT1K LTR MaLR 100 328 -260 6035 78 29 2 chrX 162007307 162009082 -14965058 - L1PA12 LINE L1 -1 6167 4363 263 356 31 62 chrX 162009082 162009136 -14965004 + MLT1K LTR MaLR 328 382 -206 2041 124 24 0 chrX 162009311 162009601 -14964539 + AluSx SINE Alu 1 297 -15 541 319 88 31 chrX 162009791 162010111 -14964029 + L2 LINE L2 1705 2042 -1272 11954 150 17 10 chrX 162010123 162010601 -14963539 - L1MA3 LINE L1 0 6305 5832 342 0 0 0 chrX 162010601 162010639 -14963501 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2036 102 25 4 chrX 162010639 162010913 -14963227 - AluSc SINE Alu -29 280 1 11954 150 17 10 chrX 162010913 162013768 -14960372 - L1MA3 LINE L1 -472 5833 2941 2615 139 28 7 chrX 162015520 162015943 -14958197 + MSTB1 LTR MaLR 1 432 0 929 285 87 36 chrX 162016131 162016663 -14957477 - L1ME3A LINE L1 -136 6034 5476 689 235 55 0 chrX 162017854 162018071 -14956069 - L1ME3A LINE L1 -672 5492 5264 39060 66 6 3 chrX 162020111 162026235 -14947905 + L1PA5 LINE L1 5 6149 -5 1042 266 45 12 chrX 162026270 162026601 -14947539 - MER93a LTR ERV1 0 402 61 9053 76 11 13 chrX 162026905 162028150 -14945990 + L1PA7 LINE L1 4106 5360 -794 2214 110 0 13 chrX 162028150 162028459 -14945681 + AluSg SINE Alu 1 305 -5 9053 76 11 13 chrX 162028459 162029250 -14944890 + L1PA7 LINE L1 5360 6151 -3 458 206 118 15 chrX 162029345 162029481 -14944659 - LTR55 LTR ERV -383 165 16 749 118 0 74 chrX 162029652 162029787 -14944353 + FLAM_C SINE Alu 1 125 -18 473 343 43 39 chrX 162029816 162030049 -14944091 + MIR SINE MIR 15 248 -14 387 190 0 0 chrX 162030077 162030156 -14943984 - MER116 DNA Mariner -1 79 1 254 277 36 12 chrX 162030384 162030467 -14943673 + MER58A DNA MER1_type 2 86 -21 2332 198 122 72 chrX 162030495 162031268 -14942872 - MER21B LTR ERV1 -52 811 1 687 219 46 0 chrX 162031268 162031406 -14942734 + MER58A DNA MER1_type 80 224 0 1090 263 157 16 chrX 162031455 162032033 -14942107 + Charlie7 DNA MER1_type 60 719 -1893 1797 148 3 64 chrX 162032516 162032846 -14941294 + AluSx SINE Alu 1 310 -2 2263 107 0 3 chrX 162032884 162033184 -14940956 + AluSp SINE Alu 1 299 -14 301 273 0 61 chrX 162033330 162033429 -14940711 + L1MC4 LINE L1 6614 6706 -1336 734 313 117 39 chrX 162033442 162034008 -14940132 - L2 LINE L2 0 3313 2702 1749 186 6 10 chrX 162034506 162034817 -14939323 + AluJo SINE Alu 1 310 -2 258 91 0 0 chrX 162034835 162034879 -14939261 + L1MA3 LINE L1 6262 6305 0 40 0 0 0 chrX 162034894 162034934 -14939206 + AT_rich Low_complexity Low_complexity 1 40 0 2368 69 30 7 chrX 162034934 162035237 -14938903 + AluSp SINE Alu 1 310 -3 1510 214 67 0 chrX 162035714 162036055 -14938085 + MLT1A1 LTR MaLR 1 364 -1 320 250 9 27 chrX 162036707 162036819 -14937321 + L1ME2 LINE L1 5826 5935 -229 955 149 19 0 chrX 162036821 162036982 -14937158 - MLT1C LTR MaLR -303 164 1 367 178 0 0 chrX 162036982 162037055 -14937085 + MER20 DNA MER1_type 147 219 0 1852 134 54 13 chrX 162037340 162037638 -14936502 + AluJb SINE Alu 1 310 -2 696 277 80 8 chrX 162037966 162038204 -14935936 + MIR SINE MIR 2 256 -6 299 167 49 49 chrX 162038607 162038709 -14935431 - MLT1J1 LTR MaLR -2 444 343 2286 99 51 23 chrX 162038739 162039091 -14935049 + THE1B LTR MaLR 3 364 0 11960 92 4 0 chrX 162039091 162040661 -14933479 + THE1B-int LTR MaLR 1 1576 -4 1985 140 49 20 chrX 162040665 162041014 -14933126 + THE1B LTR MaLR 1 359 -5 677 197 211 22 chrX 162041036 162041259 -14932881 - MLT1J1 LTR MaLR -167 279 15 1026 188 183 68 chrX 162041340 162041507 -14932633 + MSTC LTR MaLR 2 148 -280 1840 178 0 7 chrX 162041507 162041805 -14932335 + AluJb SINE Alu 2 297 -15 1026 188 183 68 chrX 162041805 162042020 -14932120 + MSTC LTR MaLR 148 428 0 187 232 20 131 chrX 162042447 162042546 -14931594 - MER5A DNA MER1_type -6 183 96 * 378 171 24 61 chrX 162042470 162042552 -14931588 + MER5A DNA MER1_type 34 112 -77 1510 160 27 87 chrX 162042617 162042949 -14931191 - AluJo SINE Alu 0 312 1 919 195 6 0 chrX 162042957 162043131 -14931009 - MER5B DNA MER1_type -3 175 1 1230 108 0 0 chrX 162043448 162043615 -14930525 + AluSg/x SINE Alu 137 303 -9 504 204 338 7 chrX 162044011 162044153 -14929987 + MER5A DNA MER1_type 1 189 0 460 262 48 28 chrX 162044181 162044326 -14929814 + MIR SINE MIR 60 207 -55 276 359 62 39 chrX 162044378 162044506 -14929634 - L2 LINE L2 0 3272 3142 348 274 83 25 chrX 162044636 162044793 -14929347 + MIR3 SINE MIR 18 183 -25 797 213 181 53 chrX 162044802 162045271 -14928869 - MER34C LTR ERV1 0 585 57 2359 84 0 10 chrX 162045356 162045664 -14928476 + AluY SINE Alu 1 305 -6 466 170 20 20 chrX 162045817 162045917 -14928223 + MER21B LTR ERV1 614 713 -150 898 221 75 4 chrX 162045923 162046149 -14927991 - LTR37A LTR ERV1 -184 242 1 200 324 103 60 chrX 162046168 162046353 -14927787 - L3b LINE CR1 -19 1564 1372 47 0 0 0 chrX 162046733 162046780 -14927360 + AT_rich Low_complexity Low_complexity 1 47 0 803 195 107 0 chrX 162046861 162047030 -14927110 + MER5A DNA MER1_type 2 188 -1 2258 102 7 0 chrX 162047038 162047332 -14926808 - AluSx SINE Alu -16 296 1 228 122 0 0 chrX 162047564 162047605 -14926535 + (TA)n Simple_repeat Simple_repeat 2 42 0 788 241 23 0 chrX 162048668 162048842 -14925298 + MER5B DNA MER1_type 1 178 0 781 170 109 100 chrX 162048849 162049160 -14924980 - LTR48B LTR ERV1 0 644 368 862 174 146 0 chrX 162049187 162049400 -14924740 - LTR48 LTR ERV1 -505 282 39 697 103 21 0 chrX 162049417 162049514 -14924626 + BC200 scRNA scRNA 23 121 -79 367 143 0 0 chrX 162049529 162049585 -14924555 - MER39 LTR ERV1 -651 56 1 1772 182 16 7 chrX 162049732 162050039 -14924101 + AluJb SINE Alu 3 312 0 2195 115 0 0 chrX 162050043 162050330 -14923810 + AluSq SINE Alu 1 287 -26 21 0 0 0 chrX 162050330 162050351 -14923789 + AT_rich Low_complexity Low_complexity 1 21 0 733 212 41 6 chrX 162050503 162050673 -14923467 + MER5B DNA MER1_type 3 178 0 636 239 23 28 chrX 162050681 162050857 -14923283 + MER5B DNA MER1_type 1 175 -3 529 185 28 19 chrX 162051150 162051258 -14922882 + MER5B DNA MER1_type 2 110 -68 1235 212 30 10 chrX 162051333 162051813 -14922327 - L1MC/D LINE L1 -743 5403 4942 259 188 174 14 chrX 162051816 162051885 -14922255 + MER5B DNA MER1_type 96 175 -3 1260 186 34 31 chrX 162051982 162052011 -14922129 - MER33 DNA MER1_type -2261 324 297 1905 143 0 17 chrX 162052011 162052298 -14921842 + AluJb SINE Alu 1 282 -30 601 165 0 0 chrX 162052201 162052298 -14921842 + AluJb SINE Alu 186 305 0 208 0 0 0 chrX 162052298 162052321 -14921819 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 1274 199 38 0 chrX 162052321 162052613 -14921527 - MER33 DNA MER1_type -21 303 1 1015 152 65 78 chrX 162053149 162053366 -14920774 - MER20 DNA MER1_type -5 214 1 3155 163 0 2 chrX 162053597 162054126 -14920014 + LTR26B LTR ERV1 2 529 -2 302 255 186 35 chrX 162055065 162055210 -14918930 - MER5A DNA MER1_type 0 189 23 493 164 62 75 chrX 162055321 162055467 -14918673 + MER20 DNA MER1_type 23 166 -53 588 185 115 0 chrX 162055489 162055619 -14918521 - MER5B DNA MER1_type 0 178 34 1824 166 13 3 chrX 162055619 162055921 -14918219 + AluJo SINE Alu 1 305 -7 236 217 0 22 chrX 162055936 162055982 -14918158 - MER5B DNA MER1_type -130 48 4 604 212 87 103 chrX 162055993 162056145 -14917995 - MER5A DNA MER1_type 0 189 39 2341 83 7 3 chrX 162056145 162056445 -14917695 - AluSx SINE Alu -11 301 1 604 212 87 103 chrX 162056445 162056476 -14917664 - MER5A DNA MER1_type -150 39 9 350 226 0 10 chrX 162057204 162057306 -14916834 + GA-rich Low_complexity Low_complexity 1 101 0 1235 146 9 18 chrX 162057382 162057601 -14916539 - MER20 DNA MER1_type 0 219 3 466 246 172 12 chrX 162057638 162057894 -14916246 - MER5C DNA MER1_type 0 324 28 220 286 0 60 chrX 162058214 162058298 -14915842 - L2 LINE L2 0 3313 3235 298 308 70 44 chrX 162058337 162058564 -14915576 - L2 LINE L2 -223 3049 2817 1717 122 4 0 chrX 162058564 162058802 -14915338 + AluSx SINE Alu 3 241 -71 725 156 109 0 chrX 162058878 162059006 -14915134 - FLAM_C SINE Alu 0 143 2 296 333 11 85 chrX 162059044 162059221 -14914919 - MLT1J LTR MaLR -323 188 25 291 364 25 0 chrX 162059238 162059359 -14914781 - L2 LINE L2 -585 2729 2606 1122 242 5 0 chrX 162059361 162059584 -14914556 + MER58A DNA MER1_type 1 224 0 593 172 16 0 chrX 162060872 162060994 -14913146 + L1MB7 LINE L1 6050 6173 -11 2197 102 0 16 chrX 162061040 162061344 -14912796 - AluSx SINE Alu -13 299 1 2474 93 0 0 chrX 162062078 162062390 -14911750 + AluSq SINE Alu 1 312 -1 189 0 0 0 chrX 162062448 162062469 -14911671 + (TC)n Simple_repeat Simple_repeat 2 22 0 1780 177 0 10 chrX 162062469 162062769 -14911371 - AluJb SINE Alu -15 297 1 222 358 84 0 chrX 162063783 162063878 -14910262 + L2 LINE L2 3155 3257 -15 1875 145 17 14 chrX 162064060 162064357 -14909783 + AluJb SINE Alu 6 303 -9 298 253 182 26 chrX 162064391 162064545 -14909595 - MER5A DNA MER1_type -1 188 11 * 448 214 29 10 chrX 162064520 162064623 -14909517 + MER5A DNA MER1_type 9 113 -76 432 259 102 0 chrX 162066134 162066281 -14907859 - MER103 DNA DNA -2 164 3 356 304 101 49 chrX 162067107 162067413 -14906727 - L2 LINE L2 -443 2871 2550 478 311 179 39 chrX 162067690 162068236 -14905904 - L2 LINE L2 -938 2376 1754 2325 77 10 0 chrX 162068577 162068874 -14905266 - AluSp SINE Alu -13 300 1 21 0 0 0 chrX 162069758 162069779 -14904361 + AT_rich Low_complexity Low_complexity 1 21 0 1841 213 90 62 chrX 162070313 162070881 -14903259 + MLT1E1 LTR MaLR 71 654 0 2008 126 155 11 chrX 162071087 162071461 -14902679 + MSTA LTR MaLR 1 428 0 269 246 63 70 chrX 162071643 162071763 -14902377 + MIR SINE MIR 31 141 -67 266 223 86 101 chrX 162072008 162072147 -14901993 + L3 LINE CR1 1244 1380 -197 279 270 157 0 chrX 162072291 162072406 -14901734 - MIR SINE MIR -54 208 76 25 31 0 0 chrX 162075690 162075722 -14898418 + AT_rich Low_complexity Low_complexity 1 32 0 1762 151 56 0 chrX 162076552 162076837 -14897303 - AluJb SINE Alu -11 301 1 855 157 7 7 chrX 162077899 162078039 -14896101 - AluJo SINE Alu -172 140 1 371 296 61 0 chrX 162078072 162078187 -14895953 + MIR SINE MIR 115 236 -26 789 257 136 1 chrX 162078216 162078574 -14895566 + L2 LINE L2 2654 3063 -250 989 190 10 0 chrX 162078578 162078773 -14895367 - MER20 DNA MER1_type 0 219 23 186 191 0 0 chrX 162078882 162078924 -14895216 + (TA)n Simple_repeat Simple_repeat 2 43 0 290 290 31 45 chrX 162078993 162079183 -14894957 - L1MC/D LINE L1 -307 5814 5683 296 272 43 22 chrX 162079801 162079893 -14894247 - MIR3 SINE MIR -18 190 97 207 0 0 0 chrX 162080188 162080211 -14893929 + (TTTTTA)n Simple_repeat Simple_repeat 6 28 0 1091 23 0 0 chrX 162080211 162080343 -14893797 - L1PA4 LINE L1 0 6155 6024 302 286 115 24 chrX 162082667 162082954 -14891186 + L1M4 LINE L1 2110 2422 -3724 26 30 0 0 chrX 162083156 162083189 -14890951 + AT_rich Low_complexity Low_complexity 1 33 0 1785 177 3 0 chrX 162083877 162084171 -14889969 - AluJo SINE Alu -17 295 1 368 290 23 46 chrX 162084207 162084338 -14889802 - MIR3 SINE MIR -44 164 37 296 296 19 0 chrX 162084698 162084806 -14889334 + L1P LINE L1 4906 5015 -1131 264 30 0 0 chrX 162084812 162084845 -14889295 + (TG)n Simple_repeat Simple_repeat 2 34 0 1089 268 91 30 chrX 162084904 162085516 -14888624 + L1MC4a LINE L1 5351 5992 -174 27 87 0 0 chrX 162085587 162085656 -14888484 + AT_rich Low_complexity Low_complexity 1 69 0 41 82 0 0 chrX 162085741 162085838 -14888302 + AT_rich Low_complexity Low_complexity 1 97 0 348 301 110 8 chrX 162086220 162086456 -14887684 + L1MC4a LINE L1 5716 5975 -1833 25 51 0 0 chrX 162086607 162086646 -14887494 + AT_rich Low_complexity Low_complexity 1 39 0 454 86 0 0 chrX 162087499 162087557 -14886583 - Alu SINE Alu -22 290 233 4587 179 39 19 chrX 162087902 162088743 -14885397 - L1MB7 LINE L1 -11 6173 5350 2197 113 3 0 chrX 162088743 162089034 -14885106 - AluSq SINE Alu -21 292 1 4587 179 39 19 chrX 162089034 162089788 -14884352 - L1MB7 LINE L1 -834 5350 4535 1129 171 102 102 chrX 162089788 162089985 -14884155 - MER2 DNA MER2_type 0 344 145 1798 171 13 3 chrX 162089985 162090284 -14883856 + AluSx SINE Alu 1 302 -10 1129 171 102 102 chrX 162090284 162090430 -14883710 - MER2 DNA MER2_type -198 146 1 4587 179 39 19 chrX 162090430 162090543 -14883597 - L1MB7 LINE L1 -1649 4535 4426 504 184 6 120 chrX 162090541 162090699 -14883441 - L1MB7 LINE L1 -2034 4112 3973 * 1373 225 131 82 chrX 162090715 162091236 -14882904 + MER77 LTR ERV1 54 599 -6 2998 218 74 3 chrX 162091327 162092080 -14882060 - L1MB7 LINE L1 -2173 3973 3167 830 160 8 0 chrX 162092418 162092549 -14881591 - FLAM_A SINE Alu -1 132 1 228 135 0 0 chrX 162093773 162093810 -14880330 + (TA)n Simple_repeat Simple_repeat 1 37 0 313 329 48 14 chrX 162095491 162095637 -14878503 - MARNA DNA Mariner -388 198 48 384 22 0 0 chrX 162096150 162096170 -14877970 + (TG)n Simple_repeat Simple_repeat 1 65 0 384 22 0 0 chrX 162096170 162096215 -14877925 + (TG)n Simple_repeat Simple_repeat 2 46 0 594 276 40 47 chrX 162097480 162097777 -14876363 - L1ME4a LINE L1 -269 5852 5558 182 330 49 44 chrX 162099027 162099230 -14874910 - L2 LINE L2 -339 2975 2772 464 163 0 0 chrX 162100869 162100949 -14873191 - MADE1 DNA Mariner 0 80 1 1689 142 12 82 chrX 162101024 162101161 -14872979 + AluJo SINE Alu 1 146 -166 2336 90 3 0 chrX 162101161 162101460 -14872680 + AluY SINE Alu 1 300 -11 1689 142 12 82 chrX 162101460 162101653 -14872487 + AluJo SINE Alu 146 308 -4 292 280 240 7 chrX 162102134 162102284 -14871856 - L3b LINE CR1 -166 1417 1233 307 61 20 0 chrX 162102357 162102406 -14871734 + L1MA3 LINE L1 6255 6304 -1 182 338 42 14 chrX 162102528 162102599 -14871541 - L2 LINE L2 -2805 509 437 2261 145 48 24 chrX 162103217 162103638 -14870502 + MSTB1 LTR MaLR 1 431 -1 2240 96 7 0 chrX 162103910 162104261 -14869879 + AluSx SINE Alu 1 353 0 187 350 70 0 chrX 162104491 162104591 -14869549 + L2 LINE L2 2967 3073 -199 234 62 0 0 chrX 162104852 162104884 -14869256 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 217 277 128 21 chrX 162105047 162105141 -14868999 + MIR SINE MIR 108 211 -51 197 337 0 22 chrX 162105257 162105346 -14868794 + MIR3 SINE MIR 114 200 -8 1792 195 163 14 chrX 162105375 162105805 -14868335 - Charlie1a DNA MER1_type -957 498 5 203 306 0 0 chrX 162105810 162105859 -14868281 + MIR SINE MIR 210 258 -4 288 284 31 19 chrX 162106170 162106332 -14867808 + GA-rich Low_complexity Low_complexity 1 164 0 1012 164 195 95 chrX 162106505 162106864 -14867276 + MSTD LTR MaLR 1 395 -1 283 159 0 0 chrX 162106870 162106914 -14867226 + MSTB2 LTR MaLR 414 457 0 261 119 0 0 chrX 162106972 162107014 -14867126 + (CA)n Simple_repeat Simple_repeat 2 43 0 404 56 0 0 chrX 162107081 162107135 -14867005 - MLT2A2 LTR ERVL 0 453 400 2309 104 30 33 chrX 162107139 162107504 -14866636 - THE1B LTR MaLR 0 364 1 462 36 0 0 chrX 162107527 162107583 -14866557 + (TG)n Simple_repeat Simple_repeat 2 57 0 37 0 0 0 chrX 162108049 162108086 -14866054 + AT_rich Low_complexity Low_complexity 1 37 0 822 229 56 0 chrX 162108922 162109101 -14865039 - MER5A DNA MER1_type 0 189 1 402 215 201 21 chrX 162109109 162109206 -14864934 - MER58C DNA MER1_type -2205 215 137 234 0 0 0 chrX 162109206 162109232 -14864908 + (TC)n Simple_repeat Simple_repeat 1 26 0 327 104 0 0 chrX 162109232 162109280 -14864860 + (TG)n Simple_repeat Simple_repeat 2 49 0 402 215 201 21 chrX 162109280 162109325 -14864815 - MER58C DNA MER1_type -2282 138 46 229 295 179 0 chrX 162109705 162109817 -14864323 + L2 LINE L2 3180 3311 -2 298 312 64 17 chrX 162110145 162110318 -14863822 - L1M4 LINE L1 -1966 4416 4236 261 156 0 0 chrX 162110335 162110380 -14863760 - L1MEd LINE L1 -3227 3155 3111 553 290 75 61 chrX 162110409 162111254 -14862886 - L1MEd LINE L1 -3250 3132 2293 462 301 102 16 chrX 162111621 162112074 -14862066 - L1MEd LINE L1 -854 1889 1283 2293 79 0 0 chrX 162112573 162112863 -14861277 - AluSg1 SINE Alu -18 291 2 210 71 0 0 chrX 162112957 162112985 -14861155 + (A)n Simple_repeat Simple_repeat 1 28 0 2492 128 50 50 chrX 162113161 162113677 -14860463 - L1MA8 LINE L1 -7 6284 5769 2132 65 59 0 chrX 162113691 162113981 -14860159 - L1PA5 LINE L1 -87 6067 5761 329 302 89 45 chrX 162114535 162114714 -14859426 + L1ME3A LINE L1 1627 1813 -4583 1044 253 149 81 chrX 162114795 162115840 -14858300 + L1ME3A LINE L1 3662 4777 -1438 559 283 62 55 chrX 162115818 162116126 -14858014 + L1ME3A LINE L1 5416 5725 -506 * 711 148 0 30 chrX 162116126 162116261 -14857879 - Charlie1 DNA MER1_type 0 2761 2631 977 235 42 0 chrX 162116268 162116485 -14857655 - Charlie1 DNA MER1_type -2535 226 1 587 248 209 12 chrX 162116485 162116739 -14857401 + L1ME3A LINE L1 5718 6021 -218 738 43 0 0 chrX 162116988 162117080 -14857060 + L1PA5 LINE L1 6063 6154 0 316 68 0 0 chrX 162117126 162117170 -14856970 + MADE1 DNA Mariner 36 79 -1 445 314 42 10 chrX 162117381 162117639 -14856501 + L1ME LINE L1 5472 5681 -440 1317 66 18 0 chrX 162117787 162117953 -14856187 - AluY SINE Alu -16 295 127 2306 81 7 0 chrX 162118038 162118335 -14855805 + AluSp SINE Alu 1 299 -14 246 380 64 41 chrX 162118526 162118792 -14855348 + L2 LINE L2 2806 3077 -195 585 282 184 58 chrX 162119653 162120029 -14854111 - L2 LINE L2 -17 3296 2874 419 228 123 24 chrX 162120034 162120245 -14853895 - MER112 DNA MER1_type -10 250 19 489 246 24 72 chrX 162120252 162120419 -14853721 - L2 LINE L2 -447 2867 2709 547 289 26 19 chrX 162120433 162120589 -14853551 + MIR3 SINE MIR 17 173 -35 982 153 35 50 chrX 162123038 162123240 -14850900 + MER20 DNA MER1_type 16 214 -5 909 194 47 0 chrX 162123638 162123829 -14850311 + MIR SINE MIR 30 229 -33 246 224 0 0 chrX 162124024 162124073 -14850067 + (CATA)n Simple_repeat Simple_repeat 3 51 0 319 302 209 5 chrX 162124074 162124289 -14849851 - L1ME LINE L1 -333 5829 5571 253 385 49 35 chrX 162124293 162124581 -14849559 + L2 LINE L2 2596 2887 -427 212 125 50 0 chrX 162125205 162125245 -14848895 + (CCCCG)n Simple_repeat Simple_repeat 1 42 0 243 289 78 102 chrX 162126036 162126202 -14847938 - L2 LINE L2 -588 2726 2565 6690 140 34 26 chrX 162126791 162128961 -14845179 - L1MA6 LINE L1 -6 6294 4121 327 298 98 75 chrX 162129112 162129367 -14844773 + MIR SINE MIR 2 262 0 2344 109 0 0 chrX 162131514 162131826 -14842314 - AluSx SINE Alu 0 312 1 473 286 112 10 chrX 162132818 162133014 -14841126 + MIR SINE MIR 47 262 0 579 192 0 0 chrX 162133582 162133681 -14840459 + AluS SINE Alu 1 99 -213 988 110 7 7 chrX 162133681 162133826 -14840314 + AluSc SINE Alu 146 290 -19 1890 163 0 3 chrX 162134495 162134790 -14839350 + AluJo SINE Alu 1 294 -18 884 158 179 46 chrX 162134880 162135165 -14838975 + MER33 DNA MER1_type 1 323 -1 246 229 83 0 chrX 162136928 162137008 -14837132 + MIR SINE MIR 106 201 -7 498 206 0 20 chrX 162137023 162137125 -14837015 + FRAM SINE Alu 66 165 -11 2258 87 0 16 chrX 162137260 162137569 -14836571 - AluSx SINE Alu -8 304 1 216 0 0 0 chrX 162137698 162137722 -14836418 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 562 288 74 49 chrX 162138466 162138897 -14835243 - L1MC4 LINE L1 -17 8025 7584 319 143 18 0 chrX 162138995 162139051 -14835089 - MER58 DNA MER1_type -3 2417 2361 354 332 96 26 chrX 162139296 162139609 -14834531 + L1MC4a LINE L1 5520 5854 -1954 373 323 50 6 chrX 162139848 162140009 -14834131 + L1MEd LINE L1 570 737 -5382 394 273 126 35 chrX 162140022 162140220 -14833920 + L1MEd LINE L1 895 1110 -5009 269 292 0 22 chrX 162140319 162140408 -14833732 - MIR3 SINE MIR -26 182 96 737 257 71 99 chrX 162140489 162140993 -14833147 + L1ME3A LINE L1 5661 6145 -25 29 0 0 0 chrX 162141999 162142028 -14832112 + AT_rich Low_complexity Low_complexity 1 29 0 2339 77 0 7 chrX 162143212 162143511 -14830629 + AluSc SINE Alu 1 297 -12 228 289 124 0 chrX 162143976 162144097 -14830043 - MIR SINE MIR -6 256 121 1229 207 0 33 chrX 162144205 162144475 -14829665 + MIR SINE MIR 2 262 0 1652 152 18 30 chrX 162145222 162145325 -14828815 - MER33 DNA MER1_type -2261 324 221 2095 128 0 0 chrX 162145325 162145615 -14828525 - AluSx SINE Alu -22 290 1 1652 152 18 30 chrX 162145615 162145839 -14828301 - MER33 DNA MER1_type -2364 221 1 979 266 147 17 chrX 162146360 162146653 -14827487 - L1MEd LINE L1 -2248 3881 3627 7761 27 0 2 chrX 162146653 162147552 -14826588 - MER11D LTR ERVK 0 897 1 979 266 147 17 chrX 162147552 162148029 -14826111 - L1MEd LINE L1 -2502 3627 3011 633 254 97 33 chrX 162148030 162148360 -14825780 - L1MEd LINE L1 -4864 1255 905 2427 216 91 39 chrX 162148450 162149266 -14824874 - L1MC5 LINE L1 -37 7924 7067 363 276 0 10 chrX 162149266 162149364 -14824776 - L1MC4 LINE L1 -1250 6792 6696 24 0 0 0 chrX 162151432 162151456 -14822684 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chrX 162152106 162152149 -14821991 + AT_rich Low_complexity Low_complexity 1 43 0 1153 98 4 145 chrX 162152265 162152520 -14821620 + MER20 DNA MER1_type 1 219 0 202 216 0 0 chrX 162154321 162154358 -14819782 + T-rich Low_complexity Low_complexity 5 41 0 368 285 43 55 chrX 162155081 162155316 -14818824 + MLT1L LTR MaLR 12 243 -372 2274 76 3 23 chrX 162155526 162155828 -14818312 + AluSx SINE Alu 1 296 -16 1993 139 6 22 chrX 162156357 162156674 -14817466 - AluSx SINE Alu 0 312 1 837 229 62 58 chrX 162157475 162157556 -14816584 - MIR SINE MIR -3 259 180 718 253 40 5 chrX 162157556 162157758 -14816382 - MER3 DNA MER1_type 0 209 1 837 229 62 58 chrX 162157758 162157934 -14816206 - MIR SINE MIR -82 180 1 3895 171 17 0 chrX 162159270 162159977 -14814163 - L1MB2 LINE L1 -27 6144 5426 1077 188 16 0 chrX 162160032 162160218 -14813922 + MER5A DNA MER1_type 1 189 0 252 77 0 0 chrX 162160840 162160879 -14813261 + (ATG)n Simple_repeat Simple_repeat 3 41 0 358 177 11 215 chrX 162161531 162161673 -14812467 - MER5B DNA MER1_type -30 148 51 1499 130 0 139 chrX 162161673 162162018 -14812122 - AluJb SINE Alu -5 297 1 358 177 11 215 chrX 162162018 162162061 -14812079 - MER5B DNA MER1_type -127 51 1 718 189 164 0 chrX 162162150 162162309 -14811831 - MER5A DNA MER1_type -1 188 4 1917 162 105 16 chrX 162163172 162163599 -14810541 + MLT1C LTR MaLR 3 467 0 624 333 46 67 chrX 162163766 162164199 -14809941 + L2 LINE L2 2554 2977 -337 271 342 54 9 chrX 162164373 162164484 -14809656 + L2 LINE L2 3144 3259 -13 7190 143 48 7 chrX 162165252 162166526 -14807614 + Tigger1 DNA MER2_type 24 1349 -1069 6000 109 12 20 chrX 162166524 162166673 -14807467 + Tigger1 DNA MER2_type 1468 1617 -801 * 1621 177 30 7 chrX 162166673 162166972 -14807168 + AluJb SINE Alu 1 306 -6 6000 109 12 20 chrX 162166972 162167779 -14806361 + Tigger1 DNA MER2_type 1617 2417 -1 228 389 0 0 chrX 162167795 162167885 -14806255 + MER5B DNA MER1_type 86 175 -3 358 283 66 30 chrX 162168306 162168504 -14805636 + L1ME2 LINE L1 4501 4705 -1441 341 301 97 25 chrX 162168743 162169022 -14805118 + L1ME2 LINE L1 4984 5282 -864 225 160 100 0 chrX 162169102 162169152 -14804988 + L1ME2 LINE L1 5385 5439 -2369 636 321 94 22 chrX 162170150 162170785 -14803355 + L1M4c LINE L1 1045 1725 -4659 790 206 158 26 chrX 162171073 162171345 -14802795 + L1ME2 LINE L1 5614 5921 -243 2474 164 43 11 chrX 162171362 162171806 -14802334 + LTR32 LTR ERVL 14 471 0 226 91 0 0 chrX 162171873 162171906 -14802234 + MER3 DNA MER1_type 17 49 -160 458 194 20 0 chrX 162171906 162172004 -14802136 + L1ME2 LINE L1 6055 6154 -10 446 276 61 41 chrX 162172002 162172301 -14801839 + L1M4c LINE L1 2250 2559 -4004 * 2300 88 3 10 chrX 162172301 162172609 -14801531 + AluSc SINE Alu 1 306 -3 446 276 61 41 chrX 162172609 162172671 -14801469 + L1M4c LINE L1 2559 2618 -3945 266 333 12 9 chrX 162173099 162173209 -14800931 + MIR SINE MIR 21 128 -80 646 195 172 0 chrX 162173209 162173383 -14800757 - MER76 LTR ERV 0 688 485 24 0 0 0 chrX 162174211 162174235 -14799905 + AT_rich Low_complexity Low_complexity 1 24 0 456 186 48 24 chrX 162174763 162174887 -14799253 - L1MD3 LINE L1 -1 7994 7868 193 341 141 33 chrX 162175157 162175433 -14798707 - L2 LINE L2 -88 3225 2920 227 213 13 0 chrX 162175436 162175511 -14798629 + GA-rich Low_complexity Low_complexity 1 76 0 677 318 73 10 chrX 162175581 162175883 -14798257 - L2 LINE L2 -439 2875 2555 369 223 39 23 chrX 162176503 162176633 -14797507 + MER3 DNA MER1_type 37 168 -41 * 1898 189 35 5 chrX 162176630 162177063 -14797077 + MER3 DNA MER1_type 2177 2622 0 21 0 0 0 chrX 162177291 162177312 -14796828 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chrX 162177690 162177715 -14796425 + AT_rich Low_complexity Low_complexity 1 25 0 544 298 50 25 chrX 162177721 162177919 -14796221 + MIR3 SINE MIR 4 206 -2 528 213 98 0 chrX 162178719 162178841 -14795299 - MIR SINE MIR -70 192 59 983 160 110 25 chrX 162178950 162179150 -14794990 + MER20 DNA MER1_type 2 218 -1 29 47 0 0 chrX 162179327 162179370 -14794770 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chrX 162179455 162179487 -14794653 + AT_rich Low_complexity Low_complexity 1 32 0 4597 114 35 1 chrX 162179509 162180247 -14793893 - L1PB4 LINE L1 -1 6155 5393 204 40 0 0 chrX 162180282 162180307 -14793833 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 41838 41 5 3 chrX 162180353 162186488 -14787652 - L1PA6 LINE L1 -3 6151 6 7404 153 28 5 chrX 162186502 162187945 -14786195 - L1PB4 LINE L1 -1509 4637 3161 272 192 90 26 chrX 162188118 162188196 -14785944 + MLT1I LTR MaLR 315 397 -12 7020 30 0 0 chrX 162191035 162191909 -14782231 - L1PA4 LINE L1 0 6155 5282 328 336 73 73 chrX 162192789 162193501 -14780639 + L2 LINE L2 2285 3012 -260 609 194 53 114 chrX 162193973 162194236 -14779904 + MER112 DNA MER1_type 8 254 -6 1125 207 41 48 chrX 162195076 162195371 -14778769 - MLT1C LTR MaLR 0 467 175 4625 159 43 4 chrX 162195372 162196201 -14777939 - MLT1-int LTR MaLR -509 862 1 311 175 0 0 chrX 162196201 162196258 -14777882 - MLT2B1 LTR ERVL 0 520 464 3412 128 10 0 chrX 162196286 162196793 -14777347 - MER41E LTR ERV1 0 512 1 605 130 9 19 chrX 162196843 162196951 -14777189 - MLT2C1 LTR ERVL -290 107 1 2445 71 0 43 chrX 162197221 162197546 -14776594 + AluY SINE Alu 1 311 0 417 189 226 0 chrX 162197758 162197864 -14776276 + MER5B DNA MER1_type 15 144 -34 1495 205 15 46 chrX 162197864 162197966 -14776174 + MLT1F1 LTR MaLR 5 109 -458 204 40 0 0 chrX 162197966 162197991 -14776149 + (TC)n Simple_repeat Simple_repeat 2 26 0 2106 127 10 0 chrX 162197991 162198282 -14775858 - AluSx SINE Alu -18 294 1 1495 205 15 46 chrX 162198282 162198505 -14775635 + MLT1F1 LTR MaLR 107 321 -246 2024 196 65 20 chrX 162198506 162198965 -14775175 + MLT2B1 LTR ERVL 1 480 -40 384 138 0 0 chrX 162198965 162199030 -14775110 + (TG)n Simple_repeat Simple_repeat 1 65 0 407 70 120 0 chrX 162199053 162199211 -14774929 + (TA)n Simple_repeat Simple_repeat 2 178 0 225 0 0 0 chrX 162199290 162199315 -14774825 + (TG)n Simple_repeat Simple_repeat 2 26 0 375 107 0 0 chrX 162199315 162199371 -14774769 + MLT2B1 LTR ERVL 465 520 0 986 203 13 12 chrX 162199374 162199592 -14774548 + MLT1F LTR MaLR 343 537 -5 225 205 0 0 chrX 162199595 162199634 -14774506 + MER5B DNA MER1_type 137 175 -3 259 318 108 37 chrX 162200012 162200226 -14773914 + L2 LINE L2 1396 1624 -1690 513 251 78 22 chrX 162200975 162201163 -14772977 + MIR SINE MIR 18 213 -49 441 321 121 46 chrX 162201169 162201558 -14772582 + L2 LINE L2 2201 2618 -696 275 85 21 0 chrX 162201629 162201676 -14772464 + (CAAA)n Simple_repeat Simple_repeat 4 51 0 1749 138 100 9 chrX 162202129 162202478 -14771662 - L1MB8 LINE L1 0 6178 5798 1937 196 122 7 chrX 162204142 162204561 -14769579 - MLT1C LTR MaLR 0 467 1 296 302 94 19 chrX 162205213 162205319 -14768821 - MIR SINE MIR -61 147 34 631 203 0 8 chrX 162205524 162205642 -14768498 + L2 LINE L2 3192 3308 -5 220 295 223 36 chrX 162205738 162205877 -14768263 - MIR SINE MIR -29 233 69 838 150 16 8 chrX 162206220 162206347 -14767793 - AluJo SINE Alu -178 134 7 370 266 38 55 chrX 162206500 162206688 -14767452 + MIR SINE MIR 72 253 -9 914 174 0 35 chrX 162206879 162207051 -14767089 + MER3 DNA MER1_type 42 207 -2 * 964 198 284 4 chrX 162207051 162207398 -14766742 + LTR50 LTR ERVL 53 580 -215 252 0 0 0 chrX 162207762 162207790 -14766350 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 71 0 0 chrX 162207792 162207834 -14766306 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chrX 162207931 162207959 -14766181 + AT_rich Low_complexity Low_complexity 1 28 0 2158 121 57 62 chrX 162207981 162208401 -14765739 - L1MA7 LINE L1 -1 6290 5873 930 223 48 77 chrX 162209390 162209727 -14764413 + LTR16A LTR ERVL 57 383 -67 505 257 114 0 chrX 162209741 162209881 -14764259 + HERV16 LTR ERVL 2 157 -4839 1544 242 50 18 chrX 162209895 162210337 -14763803 + HERV16 LTR ERVL 752 1207 -3789 2417 147 22 74 chrX 162210351 162210478 -14763662 + MLT1D LTR MaLR 40 172 -333 5313 87 3 1 chrX 162210478 162211148 -14762992 - L1PA10 LINE L1 -1 6167 5497 2417 147 22 74 chrX 162211148 162211443 -14762697 + MLT1D LTR MaLR 172 436 -69 2390 78 0 3 chrX 162211443 162211739 -14762401 - AluSq SINE Alu -18 295 1 2417 147 22 74 chrX 162211739 162211804 -14762336 + MLT1D LTR MaLR 436 503 -2 535 277 84 0 chrX 162211821 162211987 -14762153 + MER20B DNA MER1_type 449 628 -155 456 274 63 46 chrX 162212724 162212899 -14761241 + MER5A DNA MER1_type 9 186 -3 371 335 135 32 chrX 162212940 162213221 -14760919 - MLT1K LTR MaLR -155 433 124 2021 151 0 13 chrX 162214207 162214519 -14759621 - AluSx SINE Alu -4 308 1 354 267 59 22 chrX 162214618 162214753 -14759387 + LTR16C LTR ERVL 352 491 0 1655 171 25 25 chrX 162214763 162215079 -14759061 + MER58B DNA MER1_type 26 341 0 1478 168 127 72 chrX 162215954 162216300 -14757840 - MLT1A1 LTR MaLR 0 365 1 837 249 112 43 chrX 162216379 162216718 -14757422 - LTR16A1 LTR ERVL 0 457 121 240 299 98 23 chrX 162216889 162217063 -14757077 + MIR SINE MIR 46 232 -30 1125 208 19 14 chrX 162217243 162217455 -14756685 - MER20B DNA MER1_type -6 213 1 328 336 9 0 chrX 162219167 162219274 -14754866 - MIR3 SINE MIR -48 160 53 249 83 0 0 chrX 162219956 162219992 -14754148 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 279 0 0 0 chrX 162220478 162220509 -14753631 + (A)n Simple_repeat Simple_repeat 1 31 0 2303 75 0 0 chrX 162220538 162220843 -14753297 + AluY SINE Alu 1 305 0 317 307 85 48 chrX 162221075 162221534 -14752606 - L1M4 LINE L1 -1102 5044 4569 210 218 73 0 chrX 162271914 162271969 -14702171 + L2 LINE L2 3255 3313 0 940 186 67 29 chrX 162272127 162272337 -14701803 - MER20B DNA MER1_type 0 219 2 731 216 62 46 chrX 162272873 162273114 -14701026 - MLT1F LTR MaLR -2 540 296 897 127 67 0 chrX 162273146 162273311 -14700829 - MER53 DNA DNA -12 177 2 * 1043 246 100 4 chrX 162273311 162273582 -14700558 - MLT1F LTR MaLR -244 298 1 1509 197 56 122 chrX 162273612 162274247 -14699893 + MLT1E LTR MaLR 1 588 -5 1390 253 84 10 chrX 162274622 162275112 -14699028 - L1ME3A LINE L1 -32 6138 5613 361 360 68 13 chrX 162275240 162275476 -14698664 - L2 LINE L2 -455 2859 2611 289 227 67 0 chrX 162275748 162275823 -14698317 + MLT1A1 LTR MaLR 6 85 -280 876 154 0 0 chrX 162275823 162275953 -14698187 + FLAM_C SINE Alu 1 130 -13 1044 175 3 164 chrX 162275962 162276310 -14697830 + MLT1A1 LTR MaLR 72 363 -2 934 153 0 0 chrX 162276971 162277108 -14697032 + FLAM_C SINE Alu 5 141 -2 230 175 95 0 chrX 162277207 162277265 -14696875 - L1MB5 LINE L1 -9 6165 6106 2274 104 0 19 chrX 162277265 162277583 -14696557 - AluSx SINE Alu 0 312 1 2720 128 87 2 chrX 162277608 162278102 -14696038 - L1MA6 LINE L1 -5 6295 5760 1917 80 0 0 chrX 162278104 162278379 -14695761 - L1P LINE L1 -4002 2144 1870 * 9550 112 70 9 chrX 162278378 162280936 -14693204 - L1PBa LINE L1 -3985 2878 19 2248 159 21 0 chrX 162280934 162281354 -14692786 - L1MA6 LINE L1 -534 5766 5338 * 264 105 0 0 chrX 162281354 162281392 -14692748 - LTR3b LTR ERVK 0 500 463 1862 159 30 3 chrX 162281392 162281726 -14692414 - LTR3b LTR ERVK 0 500 158 7871 163 40 33 chrX 162281739 162283520 -14690620 - L1MA6 LINE L1 -805 5341 3548 274 115 0 33 chrX 162283520 162283581 -14690559 + L1PA15 LINE L1 6106 6164 -1 825 151 68 10 chrX 162283883 162284075 -14690065 - L1MA6 LINE L1 -2659 3487 3285 582 277 73 5 chrX 162284110 162284330 -14689810 - L1M2c LINE L1 -6200 589 355 411 273 142 52 chrX 162284468 162284856 -14689284 + MLT1H LTR MaLR 119 541 -8 954 237 36 80 chrX 162284888 162285240 -14688900 + L1MC4 LINE L1 7537 7860 -182 441 0 0 0 chrX 162285240 162285289 -14688851 + (TG)n Simple_repeat Simple_repeat 2 50 0 954 237 36 80 chrX 162285289 162285459 -14688681 + L1MC4 LINE L1 7860 8036 -6 1796 216 60 21 chrX 162286665 162287178 -14686962 - L1ME3A LINE L1 -52 6118 5586 257 315 45 36 chrX 162287264 162287375 -14686765 - MIR SINE MIR -131 131 20 702 291 111 7 chrX 162287724 162288030 -14686110 + MLT1J2 LTR MaLR 113 450 0 248 269 27 101 chrX 162288346 162288495 -14685645 - MIR SINE MIR -26 236 99 28 29 0 0 chrX 162288666 162288701 -14685439 + AT_rich Low_complexity Low_complexity 1 35 0 488 259 102 7 chrX 162289392 162289539 -14684601 + MIR3 SINE MIR 34 194 -14 1397 252 90 22 chrX 162289743 162290199 -14683941 - MLT1E LTR MaLR 0 593 107 209 301 163 41 chrX 162291315 162291438 -14682702 - MIR SINE MIR -36 226 89 2612 58 0 3 chrX 162292270 162292582 -14681558 + AluY SINE Alu 1 311 0 1923 138 66 39 chrX 162292740 162293103 -14681037 + MER93b LTR ERV1 1 373 0 518 324 87 21 chrX 162293878 162294119 -14680021 - MIR SINE MIR 0 262 6 1536 199 79 24 chrX 162294198 162294579 -14679561 + MLT1C LTR MaLR 8 409 -58 698 248 7 0 chrX 162294802 162294943 -14679197 + MIR SINE MIR 2 143 -119 202 264 28 14 chrX 162295064 162295136 -14679004 + MIR SINE MIR 84 156 -106 238 188 141 16 chrX 162295223 162295287 -14678853 - MIR SINE MIR -106 156 85 238 343 131 11 chrX 162295716 162295891 -14678249 - MIR SINE MIR -48 214 19 250 325 53 9 chrX 162296014 162296128 -14678012 + MIR3 SINE MIR 7 125 -83 587 224 102 37 chrX 162296338 162296584 -14677556 + LTR37B LTR ERV1 198 459 -9 1115 229 31 47 chrX 162296644 162296963 -14677177 + ERVL LTR ERVL 4918 5231 -533 1208 288 72 40 chrX 162297155 162297272 -14676868 - L2 LINE L2 -2 3311 3199 300 120 0 0 chrX 162297272 162297322 -14676818 + (TG)n Simple_repeat Simple_repeat 2 51 0 1208 288 72 40 chrX 162297322 162297530 -14676610 - L2 LINE L2 -114 3199 2999 1213 216 0 0 chrX 162297530 162297752 -14676388 + MER58A DNA MER1_type 1 222 -2 1208 288 72 40 chrX 162297752 162298026 -14676114 - L2 LINE L2 -314 2999 2676 325 291 270 7 chrX 162300593 162300741 -14673399 - MIR SINE MIR -15 247 61 2134 109 17 7 chrX 162301102 162301395 -14672745 - AluSc SINE Alu -13 296 1 12934 89 3 25 chrX 162301578 162303945 -14670195 + L1P3 LINE L1 11 2363 -4098 231 188 0 0 chrX 162303948 162303996 -14670144 - MER93b LTR ERV1 -228 145 98 24 53 0 0 chrX 162304311 162304349 -14669791 + AT_rich Low_complexity Low_complexity 1 38 0 9187 77 8 1 chrX 162304356 162306381 -14667759 + L1PA7 LINE L1 4106 6149 -5 24 0 0 0 chrX 162306526 162306550 -14667590 + AT_rich Low_complexity Low_complexity 1 24 0 531 0 0 0 chrX 162307319 162307378 -14666762 + (TG)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chrX 162308437 162308463 -14665677 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 193 167 0 0 chrX 162308465 162308501 -14665639 - L2 LINE L2 -15 3257 3222 22 35 0 0 chrX 162308648 162308677 -14665463 + AT_rich Low_complexity Low_complexity 1 29 0 1624 130 8 16 chrX 162309873 162310120 -14664020 - AluJb SINE Alu -24 288 44 351 299 24 16 chrX 162310302 162310429 -14663711 - L2 LINE L2 -5 3308 3181 364 335 46 12 chrX 162310836 162310991 -14663149 + MIR3 SINE MIR 10 170 -38 389 256 154 26 chrX 162310991 162311147 -14662993 + MER5B DNA MER1_type 3 178 0 188 283 19 0 chrX 162311622 162311675 -14662465 + L2 LINE L2 3218 3271 -1 216 297 0 14 chrX 162312973 162313047 -14661093 + MIR3 SINE MIR 87 159 -49 382 300 10 10 chrX 162313148 162313248 -14660892 - MIR SINE MIR -131 131 32 2421 100 0 0 chrX 162313617 162313926 -14660214 - AluSq SINE Alu -4 309 1 623 196 87 7 chrX 162313935 162314073 -14660067 - L2 LINE L2 -3 3310 3162 223 145 65 0 chrX 162314073 162314135 -14660005 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 263 241 78 43 chrX 162314148 162314264 -14659876 - L2 LINE L2 -168 3145 3026 * 882 318 157 26 chrX 162314259 162315183 -14658957 - L2 LINE L2 -40 3273 2234 1157 225 142 87 chrX 162315633 162316184 -14657956 + MLT1G LTR MaLR 9 584 -6 317 329 43 0 chrX 162316368 162316508 -14657632 + MLT1-int LTR MaLR 399 544 -827 1357 92 100 0 chrX 162316819 162317048 -14657092 - L1MA7 LINE L1 -9 6282 6031 1698 162 48 10 chrX 162317130 162317420 -14656720 - AluJb SINE Alu -11 301 1 5697 133 28 3 chrX 162317942 162319007 -14655133 - L1MA5 LINE L1 -6 6294 5203 2165 233 78 13 chrX 162319238 162319828 -14654312 + MLT1G LTR MaLR 1 590 0 182 322 68 0 chrX 162321139 162321198 -14652942 - L2 LINE L2 -27 3245 3183 182 356 82 41 chrX 162321524 162321670 -14652470 + L2 LINE L2 3108 3259 -13 412 305 40 33 chrX 162321860 162322011 -14652129 + MIR3 SINE MIR 4 155 -53 910 226 6 0 chrX 162322187 162322364 -14651776 + MER45A DNA AcHobo 1 178 0 261 337 83 91 chrX 162322437 162322835 -14651305 + L2 LINE L2 2837 3231 -41 1016 217 9 0 chrX 162323835 162324052 -14650088 - MER20 DNA MER1_type 0 219 1 709 249 156 69 chrX 162324168 162324502 -14649638 + L2 LINE L2 2502 2864 -450 470 150 13 0 chrX 162324503 162324592 -14649548 - MER58 DNA MER1_type 0 2420 120 368 268 35 42 chrX 162325270 162325412 -14648728 + MLT2E LTR ERVL 34 174 -454 359 339 86 19 chrX 162325434 162325691 -14648449 + MLT2E LTR ERVL 355 628 0 1323 133 18 18 chrX 162325882 162326100 -14648040 + MER20 DNA MER1_type 2 219 0 698 251 81 9 chrX 162326442 162326665 -14647475 + MIR SINE MIR 16 254 -8 669 320 58 50 chrX 162327033 162327411 -14646729 + L3 LINE CR1 1144 1524 -53 306 49 0 0 chrX 162328508 162328549 -14645591 + tRNA-Cys-TGC tRNA tRNA 1 41 -34 841 179 7 0 chrX 162329036 162329181 -14644959 - FRAM SINE Alu -30 146 1 2407 76 3 0 chrX 162329312 162329615 -14644525 - AluSp SINE Alu -9 304 1 1590 142 18 36 chrX 162330000 162330453 -14643687 + L1MA9 LINE L1 5902 6334 0 293 206 0 149 chrX 162330524 162330665 -14643475 + MER112 DNA MER1_type 32 151 -109 508 169 85 0 chrX 162330688 162330806 -14643334 + L1PA16 LINE L1 5990 6117 -49 580 301 76 17 chrX 162330829 162331065 -14643075 - MIR SINE MIR -10 252 3 508 223 10 0 chrX 162331999 162332102 -14642038 - MER5A DNA MER1_type -82 107 4 891 195 12 0 chrX 162332103 162332272 -14641868 - MER5B DNA MER1_type -4 174 4 1115 177 9 44 chrX 162332751 162332977 -14641163 - MER20 DNA MER1_type -1 218 1 188 340 94 28 chrX 162333412 162333518 -14640622 + L2 LINE L2 3200 3312 -1 856 267 112 25 chrX 162334268 162334635 -14639505 - LTR16C LTR ERVL -3 488 90 1764 190 56 58 chrX 162334652 162335005 -14639135 + MLT1D LTR MaLR 1 354 -151 3197 139 17 2 chrX 162335005 162335545 -14638595 + LTR55 LTR ERV 1 548 0 1764 190 56 58 chrX 162335545 162335690 -14638450 + MLT1D LTR MaLR 354 498 -7 283 354 16 16 chrX 162336122 162336249 -14637891 + L2 LINE L2 2908 3034 -238 722 232 19 0 chrX 162336765 162336920 -14637220 + MER45A DNA AcHobo 1 158 -20 367 324 55 103 chrX 162337102 162338114 -14636026 + L2 LINE L2 1316 2279 -1035 1727 88 15 4 chrX 162338202 162338464 -14635676 - L1PA13 LINE L1 -79 6084 5820 1999 147 45 3 chrX 162338464 162338826 -14635314 + L1MA6 LINE L1 5910 6300 0 2339 96 3 13 chrX 162339560 162339873 -14634267 - AluSx SINE Alu -2 310 1 27 0 0 0 chrX 162339885 162339912 -14634228 + AT_rich Low_complexity Low_complexity 1 27 0 501 201 98 18 chrX 162339966 162340130 -14634010 + MER96B DNA MER1_type? 3 179 -238 244 228 18 0 chrX 162340187 162340244 -14633896 + MIR SINE MIR 103 160 -102 207 0 0 0 chrX 162340560 162340583 -14633557 + (CATGC)n Simple_repeat Simple_repeat 1 23 0 537 210 0 0 chrX 162341063 162341163 -14632977 + MIR SINE MIR 163 262 0 1218 328 118 65 chrX 162341500 162343475 -14630665 + L2 LINE L2 461 2541 -773 448 286 8 16 chrX 162343472 162343598 -14630542 + L2 LINE L2 3188 3312 -1 * 367 303 210 14 chrX 162343601 162343891 -14630249 + L2 LINE L2 2537 2883 -431 289 286 71 0 chrX 162343859 162343943 -14630197 + L2 LINE L2 3220 3309 -4 * 275 296 120 0 chrX 162344011 162344153 -14629987 + L2 LINE L2 1753 1911 -1403 1701 263 71 20 chrX 162344161 162345214 -14628926 - L1MEc LINE L1 -2984 3231 2148 725 22 0 0 chrX 162345214 162345304 -14628836 - L1PA3 LINE L1 0 6155 6066 1701 263 71 20 chrX 162345304 162345371 -14628769 - L1MEc LINE L1 -4067 2148 2086 502 268 21 0 chrX 162345403 162345545 -14628595 - MER117 DNA MER1_type -52 145 1 315 297 48 48 chrX 162345578 162345723 -14628417 - MER5A DNA MER1_type -1 188 44 260 312 39 58 chrX 162345598 162345752 -14628388 + MER5A DNA MER1_type 33 183 -6 * 628 240 29 0 chrX 162346557 162346728 -14627412 - MER5B DNA MER1_type 0 178 3 534 70 0 0 chrX 162346927 162346998 -14627142 + (CA)n Simple_repeat Simple_repeat 2 72 0 876 152 62 0 chrX 162347063 162347241 -14626899 - MER53 DNA DNA 0 189 1 231 161 0 0 chrX 162347562 162347618 -14626522 + GA-rich Low_complexity Low_complexity 1 56 0 793 125 69 0 chrX 162347837 162347981 -14626159 + L1MA8 LINE L1 6133 6286 -5 25 65 0 0 chrX 162348061 162348107 -14626033 + AT_rich Low_complexity Low_complexity 1 46 0 584 259 141 12 chrX 162348588 162348758 -14625382 - MIR SINE MIR -34 228 37 327 287 112 21 chrX 162348804 162349090 -14625050 - L1ME4a LINE L1 -220 5901 5590 800 234 38 19 chrX 162349107 162349316 -14624824 + MIR SINE MIR 8 220 -42 35989 63 5 1 chrX 162349330 162354207 -14619933 + L1PA5 LINE L1 11 4906 -1240 21 36 0 0 chrX 162354207 162354235 -14619905 + AT_rich Low_complexity Low_complexity 1 28 0 799 21 0 0 chrX 162354359 162354455 -14619685 - L1PA3 LINE L1 0 6155 6060 7411 39 5 0 chrX 162354461 162355718 -14618422 + L1PA5 LINE L1 4892 6153 -1 296 403 50 35 chrX 162355978 162356179 -14617961 + L2 LINE L2 2926 3129 -143 528 200 0 0 chrX 162356238 162356358 -14617782 + (TA)n Simple_repeat Simple_repeat 1 120 0 2282 106 0 3 chrX 162356358 162356661 -14617479 - AluSx SINE Alu -10 302 1 250 195 24 0 chrX 162356806 162356888 -14617252 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 275 83 0 21 chrX 162356889 162356937 -14617203 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 592 52 0 0 chrX 162357125 162357202 -14616938 + L1PA5 LINE L1 6065 6141 -13 206 294 103 0 chrX 162357481 162357549 -14616591 - L3b LINE CR1 -405 1178 1104 1039 234 28 0 chrX 162358089 162358307 -14615833 + MER58A DNA MER1_type 1 224 0 252 0 0 0 chrX 162359141 162359169 -14614971 + (TGG)n Simple_repeat Simple_repeat 2 29 0 356 261 174 0 chrX 162359364 162359479 -14614661 + MLT1J2 LTR MaLR 264 398 -52 1087 202 28 0 chrX 162360153 162360366 -14613774 + MER20 DNA MER1_type 1 219 0 960 241 14 18 chrX 162360426 162360646 -14613494 + MER20 DNA MER1_type 1 219 0 192 326 53 38 chrX 162360851 162360983 -14613157 + L2 LINE L2 3173 3306 -7 340 145 0 0 chrX 162361985 162362047 -14612093 + L1PB4 LINE L1 6093 6154 -2 188 135 27 0 chrX 162363495 162363532 -14610608 + GA-rich Low_complexity Low_complexity 1 38 0 410 343 81 10 chrX 162363591 162363789 -14610351 + MIR SINE MIR 32 243 -19 382 290 61 23 chrX 162364108 162364239 -14609901 - MIR SINE MIR -107 155 20 376 356 96 5 chrX 162366058 162366246 -14607894 + MIR3 SINE MIR 4 208 0 199 100 33 0 chrX 162366395 162366425 -14607715 - L2 LINE L2 -18 3295 3265 818 312 97 17 chrX 162366586 162366935 -14607205 + LTR16C LTR ERVL 90 466 -25 2348 111 48 17 chrX 162367507 162367860 -14606280 + THE1B LTR MaLR 1 364 0 11701 92 9 5 chrX 162367860 162369432 -14604708 + THE1B-int LTR MaLR 1 1580 0 2111 130 72 17 chrX 162369432 162369777 -14604363 + THE1B LTR MaLR 1 364 0 1919 209 65 83 chrX 162369828 162370432 -14603708 + MLT1E LTR MaLR 1 593 0 927 244 5 24 chrX 162370741 162370954 -14603186 + MER58A DNA MER1_type 1 209 -15 723 240 14 37 chrX 162371404 162371621 -14602519 + MIR SINE MIR 50 261 -1 210 298 29 77 chrX 162372294 162372398 -14601742 - MIR SINE MIR -83 125 27 190 306 16 16 chrX 162372533 162372595 -14601545 + L3 LINE CR1 1497 1558 -19 211 306 59 0 chrX 162372818 162372903 -14601237 - MIR3 SINE MIR -15 193 104 207 246 49 0 chrX 162373508 162373569 -14600571 - L2 LINE L2 0 3313 3250 343 313 74 28 chrX 162373748 162374138 -14600002 + L1M4 LINE L1 2600 3007 -3139 528 320 133 18 chrX 162374153 162374490 -14599650 + L1M4 LINE L1 3089 3464 -2682 292 287 125 42 chrX 162374503 162374728 -14599412 - L1M4 LINE L1 -2213 3933 3728 225 0 0 0 chrX 162374728 162374753 -14599387 + (TG)n Simple_repeat Simple_repeat 2 26 0 292 287 125 42 chrX 162374753 162374910 -14599230 - L1M4 LINE L1 -2418 3728 3519 535 253 152 41 chrX 162374919 162375426 -14598714 + L1M4 LINE L1 3883 4445 -1701 24 0 0 0 chrX 162375670 162375694 -14598446 + AT_rich Low_complexity Low_complexity 1 24 0 211 184 0 0 chrX 162375982 162376020 -14598120 + (TG)n Simple_repeat Simple_repeat 2 39 0 28 48 0 0 chrX 162376210 162376252 -14597888 + AT_rich Low_complexity Low_complexity 1 42 0 2174 125 0 3 chrX 162376377 162376680 -14597460 - AluSx SINE Alu -10 302 1 297 0 0 0 chrX 162377139 162377172 -14596968 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 286 323 97 0 chrX 162377205 162377298 -14596842 - L2 LINE L2 -33 3280 3179 2003 253 129 24 chrX 162377329 162378319 -14595821 + L2 LINE L2 2236 3308 -5 1248 201 14 0 chrX 162378978 162379197 -14594943 - MER58A DNA MER1_type -2 222 1 390 310 184 6 chrX 162380166 162380340 -14593800 + MIR SINE MIR 15 219 -43 203 59 0 29 chrX 162380461 162380495 -14593645 + (CAT)n Simple_repeat Simple_repeat 3 35 0 1003 284 28 71 chrX 162381155 162381620 -14592520 + L2 LINE L2 2869 3313 0 187 337 11 22 chrX 162381646 162381738 -14592402 - MIR SINE MIR -113 149 59 455 299 22 22 chrX 162382007 162382141 -14591999 + MER5B DNA MER1_type 43 176 -2 594 247 169 0 chrX 162382151 162382305 -14591835 - MER5A DNA MER1_type 0 189 10 2388 107 30 30 chrX 162383182 162383546 -14590594 + THE1B LTR MaLR 1 364 0 7214 97 15 80 chrX 162383707 162384120 -14590020 - Tigger1 DNA MER2_type 0 2418 1980 1807 179 0 7 chrX 162384120 162384427 -14589713 - AluJo SINE Alu -7 305 1 7214 97 15 80 chrX 162384427 162385257 -14588883 - Tigger1 DNA MER2_type -438 1980 1255 3938 144 22 0 chrX 162385254 162385877 -14588263 - Tigger1 DNA MER2_type -1780 638 2 * 1614 208 13 37 chrX 162386076 162386456 -14587684 - MLT1A2 LTR MaLR 0 374 4 1958 188 9 3 chrX 162386514 162386860 -14587280 - MER7A DNA MER2_type 0 346 1 26 50 0 0 chrX 162386860 162386900 -14587240 + AT_rich Low_complexity Low_complexity 1 40 0 275 205 106 86 chrX 162388687 162388838 -14585302 - HAL1b LINE L1 -514 834 681 1521 213 104 52 chrX 162388846 162389041 -14585099 - L1ME LINE L1 -371 5795 5612 2452 64 0 7 chrX 162389041 162389336 -14584804 - AluSc SINE Alu -16 293 1 1521 213 104 52 chrX 162389336 162389726 -14584414 - L1ME LINE L1 -554 5612 5186 470 221 74 0 chrX 162389733 162389882 -14584258 - L1ME LINE L1 -986 5160 5001 352 288 101 0 chrX 162389995 162390134 -14584006 + L2 LINE L2 3160 3312 -1 28 0 0 0 chrX 162390141 162390169 -14583971 + AT_rich Low_complexity Low_complexity 1 28 0 204 313 50 38 chrX 162390171 162390251 -14583889 - MIR SINE MIR -50 212 132 192 357 14 0 chrX 162390778 162390848 -14583292 + MIR SINE MIR 27 97 -111 703 259 42 47 chrX 162391701 162391937 -14582203 + MIR SINE MIR 12 246 -16 591 322 52 26 chrX 162391987 162392220 -14581920 + MIR SINE MIR 24 262 0 1828 227 52 11 chrX 162394893 162395359 -14578781 - MLT1E3 LTR MaLR 0 616 139 506 236 43 14 chrX 162396613 162396753 -14577387 - MIR SINE MIR -3 259 116 1971 226 164 34 chrX 162397055 162397782 -14576358 + L1ME3 LINE L1 5317 6137 -25 305 274 27 0 chrX 162398882 162398955 -14575185 - L2 LINE L2 -2 3270 3196 307 203 0 17 chrX 162399308 162399367 -14574773 - L2 LINE L2 -4 3309 3252 22 35 0 0 chrX 162399380 162399409 -14574731 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chrX 162399427 162399456 -14574684 + AT_rich Low_complexity Low_complexity 1 29 0 1310 216 44 19 chrX 162400453 162400773 -14573367 - MER46C DNA MER2_type -10 328 1 3046 136 170 116 chrX 162401433 162401986 -14572154 - L1MC3 LINE L1 -1 7784 7078 260 301 0 21 chrX 162401986 162402079 -14572061 - MLT1E3 LTR MaLR -442 125 35 3046 136 170 116 chrX 162402079 162402302 -14571838 - L1MC3 LINE L1 -707 7078 6869 210 336 93 57 chrX 162403634 162403774 -14570366 - L2 LINE L2 -32 3240 3096 2097 139 16 49 chrX 162403978 162404021 -14570119 + THE1C LTR MaLR 1 44 -331 2353 94 0 7 chrX 162404021 162404329 -14569811 + AluSx SINE Alu 1 306 -6 2097 139 16 49 chrX 162404329 162404673 -14569467 + THE1C LTR MaLR 44 375 0 207 0 0 0 chrX 162404749 162404772 -14569368 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1718 189 4 0 chrX 162404775 162405056 -14569084 - AluJo SINE Alu -30 282 1 943 181 6 0 chrX 162405194 162405354 -14568786 + MER58B DNA MER1_type 181 341 0 1276 256 9 16 chrX 162405979 162406299 -14567841 + L1MEc LINE L1 50 367 -6029 264 206 0 43 chrX 162406327 162406419 -14567721 - L1MC4 LINE L1 -1340 6702 6615 273 197 0 0 chrX 162406420 162406481 -14567659 + (TA)n Simple_repeat Simple_repeat 1 61 0 230 281 45 0 chrX 162406482 162406571 -14567569 + L1MC4 LINE L1 6614 6706 -1336 246 176 0 0 chrX 162406571 162406622 -14567518 + (TA)n Simple_repeat Simple_repeat 1 51 0 230 196 0 0 chrX 162406626 162406677 -14567463 - LTR66 LTR ERVL -171 439 389 1630 222 73 4 chrX 162406734 162407423 -14566717 + L1MEc LINE L1 382 1165 -5231 1227 171 50 149 chrX 162407423 162407672 -14566468 + MLT1A1 LTR MaLR 1 196 -169 369 57 38 0 chrX 162407672 162407725 -14566415 + L1PA6 LINE L1 6100 6154 0 1227 171 50 149 chrX 162407725 162407878 -14566262 + MLT1A1 LTR MaLR 196 363 -2 2852 261 37 17 chrX 162407880 162408979 -14565161 + L1M4 LINE L1 1451 2720 -4105 621 350 110 21 chrX 162409409 162410124 -14564016 + L2 LINE L2 2456 3231 -41 672 198 45 0 chrX 162410142 162410299 -14563841 - MER104 DNA Tc2 -3 177 14 425 224 243 29 chrX 162411097 162411307 -14562833 + MIR SINE MIR 8 262 0 1223 278 12 30 chrX 162411405 162411811 -14562329 - L1ME3A LINE L1 -27 6143 5745 588 314 69 5 chrX 162412292 162412496 -14561644 + MIR SINE MIR 42 258 -4 1002 194 44 35 chrX 162412504 162412731 -14561409 + MIR SINE MIR 4 232 -30 374 183 0 0 chrX 162412752 162412812 -14561328 - MER5B DNA MER1_type -5 173 114 27840 53 6 2 chrX 162412812 162417168 -14556972 + L1PA5 LINE L1 1779 6154 0 477 262 79 6 chrX 162417200 162417332 -14556808 - MER5B DNA MER1_type -48 139 5 21 0 0 0 chrX 162418345 162418366 -14555774 + AT_rich Low_complexity Low_complexity 1 21 0 1144 255 53 73 chrX 162418640 162419362 -14554778 - L2 LINE L2 -2 3311 2613 2098 219 68 64 chrX 162419368 162419990 -14554150 + MLT1E3 LTR MaLR 1 624 0 674 242 38 89 chrX 162420675 162421128 -14553012 - MLT1H LTR MaLR -9 540 7 194 327 59 0 chrX 162422840 162422941 -14551199 + L2 LINE L2 2947 3053 -219 233 263 12 25 chrX 162422942 162423022 -14551118 + CT-rich Low_complexity Low_complexity 1 79 0 375 314 137 16 chrX 162423091 162423215 -14550925 + L2 LINE L2 3134 3272 0 340 328 8 8 chrX 162423284 162423406 -14550734 - L2 LINE L2 0 3313 3192 1318 136 25 0 chrX 162424836 162425035 -14549105 + MER2 DNA MER2_type 8 211 -134 359 258 0 0 chrX 162425073 162425139 -14549001 + MER2 DNA MER2_type 280 345 0 191 370 0 0 chrX 162425243 162425316 -14548824 - L3 LINE CR1 -27 1550 1478 322 329 37 25 chrX 162425329 162425490 -14548650 - MIR SINE MIR 0 262 100 6713 67 5 1 chrX 162425548 162426416 -14547724 - L1PA7 LINE L1 -2 6152 5282 260 343 42 14 chrX 162426439 162426582 -14547558 - L3 LINE CR1 -113 1464 1318 555 101 0 0 chrX 162426595 162426674 -14547466 + MADE1 DNA Mariner 2 80 0 398 305 42 8 chrX 162426718 162426836 -14547304 - L2 LINE L2 0 3313 3192 349 259 46 0 chrX 162427092 162427200 -14546940 + L1ME4a LINE L1 5956 6068 -53 21 0 0 0 chrX 162429612 162429633 -14544507 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chrX 162429918 162429955 -14544185 + AT_rich Low_complexity Low_complexity 1 37 0 210 267 13 40 chrX 162433320 162433395 -14540745 - MIR SINE MIR -70 192 120 450 0 0 0 chrX 162433940 162433990 -14540150 + (CA)n Simple_repeat Simple_repeat 2 51 0 1139 238 7 3 chrX 162434826 162435112 -14539028 - L1PB1 LINE L1 -987 5159 4873 6199 87 11 9 chrX 162435117 162436103 -14538037 + L1PB1 LINE L1 5164 6151 0 342 0 0 0 chrX 162436143 162436181 -14537959 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 268 377 31 0 chrX 162436412 162436542 -14537598 + MIR3 SINE MIR 30 163 -45 252 209 15 15 chrX 162437475 162437542 -14536598 + A-rich Low_complexity Low_complexity 4 70 0 1345 159 0 30 chrX 162437710 162437981 -14536159 + L1MA7 LINE L1 6019 6281 -10 29 60 0 0 chrX 162437989 162438039 -14536101 + AT_rich Low_complexity Low_complexity 1 50 0 587 235 50 6 chrX 162438727 162438906 -14535234 - L1ME3 LINE L1 0 6162 5976 201 282 39 13 chrX 162439647 162439725 -14534415 + L2 LINE L2 3148 3227 -86 324 332 105 12 chrX 162440557 162440793 -14533347 - MIR SINE MIR -2 260 2 191 316 139 0 chrX 162440981 162441060 -14533080 + MIR SINE MIR 33 122 -86 202 338 0 14 chrX 162441616 162441687 -14532453 - MER5A DNA MER1_type -1 188 119 943 84 0 0 chrX 162441877 162441996 -14532144 - AluSg/x SINE Alu -20 292 174 180 0 0 0 chrX 162443573 162443593 -14530547 + (T)n Simple_repeat Simple_repeat 1 20 0 227 231 143 44 chrX 162444857 162444948 -14529192 - MIR SINE MIR -76 132 33 1896 155 3 7 chrX 162445849 162446145 -14527995 - AluJb SINE Alu -17 295 1 265 287 79 50 chrX 162446406 162446507 -14527633 - MIR3 SINE MIR 0 208 105 2114 164 31 41 chrX 162446801 162447371 -14526769 + MLT2A2 LTR ERVL 1 554 0 342 281 11 0 chrX 162448762 162448851 -14525289 + L1MC4 LINE L1 6614 6703 -1339 2087 90 0 47 chrX 162448856 162449156 -14524984 - AluSc SINE Alu -23 286 1 6892 168 20 7 chrX 162449189 162450330 -14523810 + L1PA16 LINE L1 3884 5062 -1104 1970 141 17 3 chrX 162450330 162450628 -14523512 + AluSx SINE Alu 1 302 -10 6892 168 20 7 chrX 162450628 162451430 -14522710 + L1PA16 LINE L1 5062 5852 -314 230 250 14 56 chrX 162451495 162451567 -14522573 + MIR SINE MIR 22 90 -118 217 242 97 16 chrX 162452026 162452088 -14522052 + L3b LINE CR1 1427 1493 -90 1717 134 0 4 chrX 162454315 162454576 -14519564 - L1PA15 LINE L1 -5 6160 5901 3576 74 9 47 chrX 162454635 162454770 -14519370 - L1PA15 LINE L1 -268 5897 5758 2292 94 0 7 chrX 162454770 162455077 -14519063 - AluSg SINE Alu -5 305 1 3576 74 9 47 chrX 162455077 162455469 -14518671 - L1PA15 LINE L1 -407 5758 5390 427 271 147 49 chrX 162455512 162455573 -14518567 - MIR SINE MIR -13 249 195 1174 219 18 0 chrX 162455573 162455792 -14518348 + MER58A DNA MER1_type 1 223 -1 427 271 147 49 chrX 162455792 162455955 -14518185 - MIR SINE MIR -67 195 3 3614 21 5 0 chrX 162456031 162456455 -14517685 + L1PA3 LINE L1 5719 6144 -11 233 285 137 50 chrX 162456546 162456714 -14517426 - MIR3 SINE MIR -10 198 8 360 0 0 0 chrX 162456727 162456767 -14517373 + (TG)n Simple_repeat Simple_repeat 1 40 0 551 246 9 0 chrX 162458365 162458475 -14515665 - MER81 DNA DNA -3 111 1 183 42 0 0 chrX 162458601 162458625 -14515515 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2091 123 7 0 chrX 162458906 162459198 -14514942 + AluSx SINE Alu 3 296 -16 1370 197 84 29 chrX 162460731 162461076 -14513064 + MLT1A1 LTR MaLR 1 364 -1 524 211 11 0 chrX 162461197 162461292 -14512848 + MER58A DNA MER1_type 3 98 -9 * 925 229 21 0 chrX 162461286 162461478 -14512662 + MER58A DNA MER1_type 28 223 -1 1369 187 64 34 chrX 162462775 162463042 -14511098 + AluJo SINE Alu 3 277 -35 2265 93 3 0 chrX 162463042 162463331 -14510809 + AluSx SINE Alu 9 298 -14 354 308 96 54 chrX 162466405 162466645 -14507495 - MIR SINE MIR -10 252 3 353 258 34 11 chrX 162466909 162466998 -14507142 - MIR SINE MIR -106 156 66 303 340 0 9 chrX 162467417 162467523 -14506617 + CT-rich Low_complexity Low_complexity 3 107 0 502 198 0 0 chrX 162467916 162468012 -14506128 + MER5A DNA MER1_type 9 104 -85 267 244 64 0 chrX 162468143 162468221 -14505919 + MER103 DNA DNA 3 85 -81 23 0 0 0 chrX 162468291 162468314 -14505826 + AT_rich Low_complexity Low_complexity 1 23 0 6225 197 31 35 chrX 162468318 162469249 -14504891 - L1MB4 LINE L1 -64 6614 5681 2214 135 0 0 chrX 162469249 162469561 -14504579 - AluSx SINE Alu 0 312 1 6225 197 31 35 chrX 162469561 162469811 -14504329 - L1MB4 LINE L1 -997 5681 5432 2433 99 0 0 chrX 162469811 162470123 -14504017 - AluSx SINE Alu 0 312 1 6225 197 31 35 chrX 162470123 162471364 -14502776 - L1MB4 LINE L1 -1246 5432 4210 1420 202 70 15 chrX 162471614 162472015 -14502125 + MER54B LTR ERVL 472 793 0 5952 223 95 42 chrX 162472016 162475235 -14498905 - L1MB4 LINE L1 -2433 4211 1163 228 86 0 0 chrX 162475235 162475270 -14498870 + (CCAA)n Simple_repeat Simple_repeat 1 35 0 5952 223 95 42 chrX 162475270 162475635 -14498505 - L1MB4 LINE L1 -5481 1163 819 2085 164 34 21 chrX 162475635 162476020 -14498120 + MLT1B LTR MaLR 1 390 0 5952 223 95 42 chrX 162476020 162476336 -14497804 - L1MB4 LINE L1 -5825 819 74 241 294 11 11 chrX 162476391 162476483 -14497657 + MER103 DNA DNA 72 163 -3 1122 202 20 0 chrX 162476953 162477156 -14496984 - MER58A DNA MER1_type -17 207 1 1851 124 64 24 chrX 162477708 162478006 -14496134 - AluJb SINE Alu -2 310 1 660 102 0 0 chrX 162478717 162478815 -14495325 + AluSp/q SINE Alu 210 307 -6 2179 80 53 10 chrX 162478815 162479114 -14495026 + AluSx SINE Alu 1 312 0 2286 103 0 0 chrX 162479417 162479708 -14494432 + AluSx SINE Alu 9 299 -13 364 186 41 21 chrX 162479967 162480064 -14494076 + MER94 DNA DNA 36 134 0 1162 175 5 31 chrX 162480669 162480892 -14493248 - MER20 DNA MER1_type -1 218 2 2752 35 0 0 chrX 162481119 162481430 -14492710 + AluY SINE Alu 1 311 0 231 191 0 0 chrX 162481562 162481604 -14492536 - L2 LINE L2 -2 3311 3270 364 263 84 21 chrX 162482582 162482677 -14491463 + L2 LINE L2 3210 3310 -3 681 289 19 29 chrX 162483053 162483261 -14490879 + MIR SINE MIR 1 206 -56 2045 162 44 10 chrX 162483525 162483933 -14490207 + LTR37A LTR ERV1 1 422 -4 1079 313 50 5 chrX 162484535 162484919 -14489221 - LTR16C LTR ERVL -30 461 61 313 355 111 32 chrX 162485960 162486177 -14487963 + MIR SINE MIR 4 237 -25 810 221 80 19 chrX 162487334 162487547 -14486593 + MIR SINE MIR 22 247 -15 691 336 177 26 chrX 162488099 162489307 -14484833 + L2 LINE L2 1519 2908 -406 399 340 200 14 chrX 162490568 162490933 -14483207 - L2 LINE L2 -4 3268 2836 304 273 124 0 chrX 162490962 162491083 -14483057 + LTR16A1 LTR ERVL 322 457 0 2239 178 13 5 chrX 162492994 162493387 -14480753 + MSTD LTR MaLR 1 396 0 23 68 0 0 chrX 162493709 162493753 -14480387 + AT_rich Low_complexity Low_complexity 1 44 0 22 70 0 0 chrX 162494692 162494735 -14479405 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chrX 162495272 162495293 -14478847 + (T)n Simple_repeat Simple_repeat 1 21 0 332 278 103 0 chrX 162495293 162495390 -14478750 - MIR SINE MIR -67 141 35 5884 130 18 17 chrX 162495570 162496473 -14477667 + MER49 LTR ERV1 1 904 -19 182 313 61 40 chrX 162496482 162496581 -14477559 + MER5A DNA MER1_type 63 163 -26 * 222 326 12 12 chrX 162496530 162496616 -14477524 - MER5A DNA MER1_type -101 88 3 256 232 20 0 chrX 162497522 162497621 -14476519 + CT-rich Low_complexity Low_complexity 2 102 0 804 291 54 12 chrX 162497943 162498184 -14475956 + LTR33 LTR ERVL 1 251 -270 266 329 0 12 chrX 162498449 162498531 -14475609 + L2 LINE L2 3191 3271 -1 389 236 211 25 chrX 162500225 162500386 -14473754 - MIR SINE MIR -71 191 1 22 35 0 0 chrX 162505450 162505479 -14468661 + AT_rich Low_complexity Low_complexity 1 29 0 264 130 0 0 chrX 162507395 162507441 -14466699 + (ATG)n Simple_repeat Simple_repeat 2 47 0 23 33 0 0 chrX 162509954 162509984 -14464156 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chrX 162510129 162510164 -14463976 + AT_rich Low_complexity Low_complexity 1 35 0 616 248 147 0 chrX 162510262 162510419 -14463721 - MER5A DNA MER1_type -1 188 9 2264 110 0 0 chrX 162510898 162511199 -14462941 - AluSc SINE Alu -8 301 1 312 246 0 0 chrX 162511291 162511360 -14462780 - MIR3 SINE MIR -1 207 139 * 1397 346 118 12 chrX 162511349 162512325 -14461815 + L2 LINE L2 1819 2897 -417 229 332 48 102 chrX 162512409 162512596 -14461544 + L2 LINE L2 3034 3210 -62 335 301 21 0 chrX 162512856 162512949 -14461191 + MIR SINE MIR 48 142 -66 23 54 0 0 chrX 162513369 162513406 -14460734 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chrX 162513766 162513791 -14460349 + (CA)n Simple_repeat Simple_repeat 2 26 0 318 82 82 0 chrX 162514310 162514358 -14459782 - MLT2B3 LTR ERVL 0 520 469 1069 129 13 0 chrX 162514358 162514513 -14459627 + Tigger1 DNA MER2_type 2 158 -2260 1027 93 0 0 chrX 162514510 162514650 -14459490 + Tigger1 DNA MER2_type 1752 1891 -527 * 14729 111 27 8 chrX 162514649 162516864 -14457276 + Tigger1 DNA MER2_type 162 2418 0 2432 191 26 51 chrX 162516868 162517396 -14456744 - MLT2B3 LTR ERVL -39 515 1 182 333 0 0 chrX 162518630 162518681 -14455459 - L2 LINE L2 -2 3311 3261 279 290 271 0 chrX 162568964 162569071 -14405069 + L2 LINE L2 3137 3272 0 23 0 0 0 chrX 162569634 162569657 -14404483 + AT_rich Low_complexity Low_complexity 1 23 0 2514 116 14 3 chrX 162569812 162570183 -14403957 + THE1C LTR MaLR 1 375 0 1310 244 134 6 chrX 162570300 162570891 -14403249 + L1MC3 LINE L1 5224 5403 -743 1011 135 26 0 chrX 162570892 162571048 -14403092 + L1M1 LINE L1 15 174 -7391 * 2423 153 13 13 chrX 162571044 162571429 -14402711 - L1M1 LINE L1 -6807 758 374 697 200 133 0 chrX 162571455 162571611 -14402529 + MER5A DNA MER1_type 4 183 -6 193 348 22 11 chrX 162572516 162572605 -14401535 - MIR SINE MIR -171 91 2 495 304 99 5 chrX 162573265 162573456 -14400684 - MIR SINE MIR -8 254 46 1550 124 0 0 chrX 162574849 162575091 -14399049 + L1MA4 LINE L1 6043 6284 -16 30 59 0 0 chrX 162575094 162575145 -14398995 + AT_rich Low_complexity Low_complexity 1 51 0 235 167 19 0 chrX 162575479 162575533 -14398607 + L1MA8 LINE L1 6234 6288 -3 676 156 8 0 chrX 162576795 162576917 -14397223 - L1MD3 LINE L1 -5 7990 7868 500 282 141 19 chrX 162577866 162578072 -14396068 - LTR16C LTR ERVL -5 486 256 440 293 113 35 chrX 162581029 162581462 -14392678 - L1ME3 LINE L1 -128 5993 5527 307 285 23 0 chrX 162581487 162581617 -14392523 - L1P5 LINE L1 -720 5431 5299 316 138 16 65 chrX 162581836 162581959 -14392181 + (CATATA)n Simple_repeat Simple_repeat 4 120 0 * 603 136 0 61 chrX 162581942 162582289 -14391851 + (TA)n Simple_repeat Simple_repeat 1 325 0 650 112 0 74 chrX 162582348 162582707 -14391433 + (TA)n Simple_repeat Simple_repeat 1 332 0 394 141 0 73 chrX 162582754 162582945 -14391195 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 317 23 0 23 chrX 162584671 162584714 -14389426 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 572 370 68 25 chrX 162585535 162585900 -14388240 - L2 LINE L2 0 3272 2892 263 353 69 0 chrX 162586020 162586136 -14388004 - L2 LINE L2 -575 2739 2616 2315 93 3 10 chrX 162586311 162586612 -14387528 + AluSp SINE Alu 1 299 -14 316 138 31 0 chrX 162586612 162586677 -14387463 + (TA)n Simple_repeat Simple_repeat 1 67 0 29 28 0 0 chrX 162587201 162587237 -14386903 + AT_rich Low_complexity Low_complexity 1 36 0 7438 29 11 0 chrX 162587237 162588333 -14385807 - L1PA5 LINE L1 -8 6146 5046 30679 46 1 1 chrX 162588339 162592174 -14381966 - L1PA5 LINE L1 -1231 4915 1081 690 57 11 0 chrX 162592155 162592243 -14381897 - L1PA5 LINE L1 -6047 99 11 * 308 279 73 37 chrX 162592290 162592426 -14381714 + L1M4 LINE L1 2274 2414 -3732 277 310 84 15 chrX 162592526 162592729 -14381411 + L1M4 LINE L1 2558 2774 -3372 3536 155 11 24 chrX 162592953 162593585 -14380555 - L1MB7 LINE L1 -19 6165 5542 315 271 33 57 chrX 162593831 162593953 -14380187 + MIR SINE MIR 72 190 -72 509 264 0 16 chrX 162594247 162594368 -14379772 - MLT1J2 LTR MaLR -295 155 37 244 311 106 26 chrX 162594592 162594743 -14379397 + MIR SINE MIR 57 219 -43 193 313 182 0 chrX 162594958 162595057 -14379083 - MIR3 SINE MIR -5 203 87 398 223 61 47 chrX 162595062 162595210 -14378930 - MIR SINE MIR -10 252 103 738 144 8 0 chrX 162595739 162595857 -14378283 + L1MD3 LINE L1 7847 7965 -30 342 235 88 37 chrX 162595945 162596081 -14378059 - MIR3 SINE MIR -16 192 50 26 64 0 0 chrX 162596558 162596605 -14377535 + AT_rich Low_complexity Low_complexity 1 47 0 667 251 78 18 chrX 162596650 162596869 -14377271 - L2 LINE L2 -779 2535 2304 5727 121 18 2 chrX 162596874 162597987 -14376153 + L1PA16 LINE L1 5041 6166 0 27 49 0 0 chrX 162599741 162599782 -14374358 + AT_rich Low_complexity Low_complexity 1 41 0 358 327 9 9 chrX 162599823 162599930 -14374210 - MIR3 SINE MIR -28 180 74 1911 207 57 2 chrX 162599930 162600351 -14373789 + L1MD1 LINE L1 5794 6237 -5 233 260 27 0 chrX 162600414 162600487 -14373653 + L1ME2 LINE L1 6036 6110 -54 421 233 35 52 chrX 162601310 162601426 -14372714 - MER81 DNA DNA 0 114 1 295 219 0 0 chrX 162601891 162601964 -14372176 + MER112 DNA MER1_type 96 168 -92 329 0 24 0 chrX 162602188 162602229 -14371911 + (TG)n Simple_repeat Simple_repeat 2 43 0 1299 205 31 96 chrX 162602390 162602776 -14371364 - MLT1A1 LTR MaLR 0 365 5 345 223 13 28 chrX 162602794 162602886 -14371254 - MIR SINE MIR -66 142 65 2073 143 15 0 chrX 162603862 162604198 -14369942 - MER2 DNA MER2_type -3 341 1 822 213 220 47 chrX 162604587 162604883 -14369257 - L1MC4a LINE L1 -1029 6779 6433 258 32 0 0 chrX 162605038 162605069 -14369071 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 660 242 84 30 chrX 162605075 162605373 -14368767 - L1MDa LINE L1 -4638 1902 1589 672 306 114 34 chrX 162605378 162605885 -14368255 - L1MDa LINE L1 -5472 1058 511 438 358 99 9 chrX 162606318 162606662 -14367478 - HAL1 LINE L1 -742 1765 1391 326 238 136 77 chrX 162606882 162606938 -14367202 - HAL1 LINE L1 -1393 1114 1063 2605 43 0 0 chrX 162606938 162607240 -14366900 - AluY SINE Alu -9 302 1 326 238 136 77 chrX 162607240 162607418 -14366722 - HAL1 LINE L1 -1444 1063 866 29 28 0 0 chrX 162607973 162608009 -14366131 + AT_rich Low_complexity Low_complexity 1 36 0 527 219 49 44 chrX 162608079 162608262 -14365878 - L1M4 LINE L1 -1569 4577 4394 3198 114 36 15 chrX 162608314 162608847 -14365293 - L1MA3 LINE L1 0 6305 5762 * 17209 88 4 2 chrX 162608837 162612033 -14362107 - L1PA7 LINE L1 0 7592 4391 13002 135 29 28 chrX 162612042 162614383 -14359757 - L1PA7 LINE L1 -3302 4282 607 1519 140 0 4 chrX 162614398 162614627 -14359513 - AluSg/x SINE Alu -7 303 76 23 54 0 0 chrX 162615205 162615242 -14358898 + AT_rich Low_complexity Low_complexity 1 37 0 346 292 41 85 chrX 162615496 162615886 -14358254 - L1ME3 LINE L1 -225 5937 5565 243 210 16 0 chrX 162615894 162615956 -14358184 + L1MA9 LINE L1 6214 6276 -36 1482 213 36 39 chrX 162616078 162616440 -14357700 - MLT1A2 LTR MaLR -13 361 1 651 310 73 27 chrX 162616494 162617314 -14356826 - L1ME3 LINE L1 -743 5403 4518 359 289 132 0 chrX 162617589 162617710 -14356430 + MIR3 SINE MIR 55 191 -17 313 263 0 40 chrX 162617801 162617900 -14356240 - MLT1I LTR MaLR -29 380 286 427 278 77 29 chrX 162618097 162618370 -14355770 - L1ME4a LINE L1 -63 6058 5773 198 103 0 0 chrX 162618892 162618921 -14355219 + (CA)n Simple_repeat Simple_repeat 1 29 0 723 236 109 35 chrX 162619310 162619539 -14354601 - MIR SINE MIR -10 252 7 1078 285 74 16 chrX 162619924 162620289 -14353851 + MLT1J2 LTR MaLR 50 435 -15 1172 217 33 0 chrX 162620546 162620758 -14353382 + MER58A DNA MER1_type 1 219 -5 433 279 44 129 chrX 162621651 162621923 -14352217 - MLT1I LTR MaLR -99 310 98 273 173 39 0 chrX 162623261 162623313 -14350827 - MER67B LTR ERV1 -463 198 145 625 162 0 43 chrX 162623401 162623518 -14350622 + LTR54 LTR ERV1 1 112 -386 1495 205 19 91 chrX 162623519 162623595 -14350545 - LTR9 LTR ERV1 -30 582 502 2498 81 0 0 chrX 162623595 162623904 -14350236 + AluSc SINE Alu 1 309 0 1495 205 19 91 chrX 162623904 162624500 -14349640 - LTR9 LTR ERV1 -110 502 2 1513 0 0 0 chrX 162624505 162624664 -14349476 + LTR54 LTR ERV1 101 4294964905 -2901 2728 137 58 46 chrX 162624664 162624891 -14349249 - LTR45 LTR ERV1 0 525 302 2053 127 3 3 chrX 162624891 162625191 -14348949 - AluSx SINE Alu -12 300 1 2728 137 58 46 chrX 162625191 162625482 -14348658 - LTR45 LTR ERV1 -223 302 1 1513 0 0 0 chrX 162625482 162625650 -14348490 + LTR54 LTR ERV1 -2392 510 0 818 238 69 31 chrX 162625651 162626106 -14348034 - LTR56 LTR ERV1 -2 574 1 303 222 68 52 chrX 162626109 162626263 -14347877 - LTR49-int LTR ERV1 -4835 1496 743 402 219 7 88 chrX 162626372 162626509 -14347631 - LTR49-int LTR ERV1 -6156 645 520 419 297 69 11 chrX 162626845 162627020 -14347120 - MER34 LTR ERV1 -5 537 353 466 238 166 0 chrX 162627354 162627505 -14346635 + MER5A DNA MER1_type 9 184 -5 338 296 35 21 chrX 162628272 162628414 -14345726 + MLT1L LTR MaLR 14 157 -458 547 221 21 41 chrX 162628928 162629098 -14345042 - MER5B DNA MER1_type 0 178 29 287 228 81 35 chrX 162629969 162630112 -14344028 - MLT1H LTR MaLR 0 549 379 340 304 31 15 chrX 162630213 162630383 -14343757 - MLT1H LTR MaLR -275 192 31 1798 175 28 0 chrX 162630432 162630752 -14343388 - MER58B DNA MER1_type 0 341 13 567 276 140 25 chrX 162631065 162631387 -14342753 - MLT1J1 LTR MaLR -19 427 69 504 276 97 31 chrX 162632584 162632812 -14341328 - MIR SINE MIR -12 250 8 279 261 0 29 chrX 162632881 162632950 -14341190 + MER5A DNA MER1_type 12 78 -111 6777 136 8 3 chrX 162633034 162635080 -14339060 - L1MA2 LINE L1 -157 6147 4093 7318 148 36 17 chrX 162635080 162636737 -14337403 + L1MA4A LINE L1 3900 5524 -779 2284 71 0 3 chrX 162636737 162637050 -14337090 + AluY SINE Alu 1 312 0 7318 148 36 17 chrX 162637050 162637634 -14336506 + L1MA4A LINE L1 5524 6196 -107 3608 32 0 9 chrX 162637634 162638074 -14336066 + L1PA5 LINE L1 5719 6154 0 7318 148 36 17 chrX 162638074 162638179 -14335961 + L1MA4A LINE L1 6196 6298 -5 205 336 92 34 chrX 162638433 162638552 -14335588 - L2 LINE L2 -3 3269 3144 3322 135 148 135 chrX 162638861 162639411 -14334729 - L1MC3 LINE L1 -10 7775 7095 268 250 45 36 chrX 162639411 162639523 -14334617 - MLT1F1 LTR MaLR -420 147 35 3322 135 148 135 chrX 162639523 162639910 -14334230 - L1MC3 LINE L1 -690 7095 6714 245 206 0 15 chrX 162639910 162639978 -14334162 + HsTC2 DNA Tc2 223 289 -1609 371 350 31 5 chrX 162640004 162640227 -14333913 + HsTC2 DNA Tc2 507 735 -1163 624 130 56 2 chrX 162640228 162640332 -14333808 - L1MC3 LINE L1 -406 7379 7280 2094 106 51 17 chrX 162640332 162640662 -14333478 - THE1B LTR MaLR -22 406 1 309 303 30 0 chrX 162640662 162640793 -14333347 + HsTC2 DNA Tc2 722 856 -1042 1294 177 96 104 chrX 162640978 162641373 -14332767 + MSTD LTR MaLR 5 396 0 1658 66 0 0 chrX 162641670 162641882 -14332258 + L1PA6 LINE L1 5940 6151 -3 450 259 71 87 chrX 162642017 162642410 -14331730 - L1 LINE L1 -2676 3470 3084 306 0 0 0 chrX 162642710 162642744 -14331396 + (TG)n Simple_repeat Simple_repeat 2 35 0 660 253 13 6 chrX 162643012 162643170 -14330970 + MER5B DNA MER1_type 1 159 -19 937 192 22 6 chrX 162643239 162643421 -14330719 - MER5A DNA MER1_type 0 189 5 346 86 12 123 chrX 162643472 162643553 -14330587 - L1PA3 LINE L1 -2 6153 6082 1441 229 30 0 chrX 162643577 162643914 -14330226 + L1MD1 LINE L1 5817 6163 -79 210 158 0 0 chrX 162643914 162643952 -14330188 + A-rich Low_complexity Low_complexity 1 38 0 1049 209 73 0 chrX 162644540 162644746 -14329394 + MER58A DNA MER1_type 1 221 -3 290 326 177 28 chrX 162644747 162644962 -14329178 - L3 LINE CR1 -1008 569 323 24 32 0 0 chrX 162646172 162646203 -14327937 + AT_rich Low_complexity Low_complexity 1 31 0 209 267 209 0 chrX 162646211 162646297 -14327843 - L2 LINE L2 -26 3287 3184 1555 265 58 27 chrX 162646484 162646971 -14327169 + MLT1H LTR MaLR 3 504 -45 2445 121 3 24 chrX 162646971 162647343 -14326797 + THE1B LTR MaLR 1 364 0 9853 117 34 33 chrX 162647343 162648920 -14325220 + THE1B-int LTR MaLR 1 1578 -2 2492 115 6 3 chrX 162648958 162649307 -14324833 + THE1B LTR MaLR 15 364 0 685 329 74 43 chrX 162649505 162650043 -14324097 - L2 LINE L2 -555 2759 2205 335 299 13 0 chrX 162650041 162650118 -14324022 - L2 LINE L2 -16 3256 3179 * 428 364 68 41 chrX 162650496 162650985 -14323155 - L2 LINE L2 -768 2546 2045 608 332 108 27 chrX 162651258 162651914 -14322226 - L2 LINE L2 -1108 2206 1498 1188 176 25 0 chrX 162652094 162652298 -14321842 + MER2 DNA MER2_type 1 209 -136 588 295 87 46 chrX 162652531 162652933 -14321207 + MLT1J2 LTR MaLR 13 440 -10 502 263 216 19 chrX 162653969 162654182 -14319958 + MIR SINE MIR 5 259 -3 678 302 124 11 chrX 162654357 162654705 -14319435 + L2 LINE L2 2927 3313 0 519 31 0 0 chrX 162655069 162655134 -14319006 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 29 47 0 0 chrX 162656365 162656408 -14317732 + AT_rich Low_complexity Low_complexity 1 43 0 338 165 48 107 chrX 162656472 162656571 -14317569 - MER58B DNA MER1_type 0 341 249 1132 223 8 4 chrX 162656571 162656809 -14317331 + MER8 DNA MER2_type 1 239 0 * 1313 210 20 0 chrX 162656809 162657054 -14317086 - MER58B DNA MER1_type -91 250 1 1349 238 32 34 chrX 162657867 162658274 -14315866 - L2 LINE L2 0 3313 2908 244 311 168 37 chrX 162658530 162658691 -14315449 + MIR SINE MIR 51 232 -30 393 289 41 8 chrX 162659805 162659926 -14314214 + MIR SINE MIR 36 160 -102 1418 228 42 32 chrX 162660986 162661386 -14312754 + LTR16A1 LTR ERVL 54 457 0 189 0 0 0 chrX 162661614 162661635 -14312505 + (A)n Simple_repeat Simple_repeat 1 21 0 1642 192 30 9 chrX 162662185 162662519 -14311621 - MER58B DNA MER1_type 0 341 1 299 136 296 23 chrX 162662888 162662976 -14311164 - FRAM SINE Alu 0 166 55 245 248 50 10 chrX 162665198 162665299 -14308841 - L1ME LINE L1 -224 5897 5793 5938 139 25 2 chrX 162665430 162667057 -14307083 - L1MA5 LINE L1 0 6300 4639 2309 96 0 3 chrX 162667080 162667382 -14306758 - AluSx SINE Alu -11 301 1 315 261 11 0 chrX 162667457 162667549 -14306591 - L1ME LINE L1 -464 5657 5565 1412 282 83 1 chrX 162667691 162668199 -14305941 - L1MC2 LINE L1 -1 7982 6149 292 288 199 0 chrX 162668230 162668376 -14305764 - MIR SINE MIR -4 258 84 323 220 0 0 chrX 162669024 162669083 -14305057 + MIR SINE MIR 184 242 -20 976 174 27 49 chrX 162669475 162669699 -14304441 - MER20 DNA MER1_type 0 219 1 286 306 90 0 chrX 162669816 162669927 -14304213 - MIR SINE MIR -60 202 82 547 259 117 10 chrX 162670074 162670271 -14303869 + LTR50 LTR ERVL 6 223 -572 1571 313 29 22 chrX 162670271 162670962 -14303178 + ERVL LTR ERVL 4221 4916 -848 261 0 0 0 chrX 162671452 162671481 -14302659 + (TG)n Simple_repeat Simple_repeat 2 30 0 659 285 311 10 chrX 162671926 162672288 -14301852 + LTR50 LTR ERVL 34 286 -509 2982 154 22 7 chrX 162672288 162672841 -14301299 - L1MB7 LINE L1 -12 6172 5612 659 285 311 10 chrX 162672841 162673064 -14301076 + LTR50 LTR ERVL 286 795 0 2985 249 82 58 chrX 162673340 162673767 -14300373 - L2 LINE L2 0 3313 2898 1784 158 0 63 chrX 162673767 162674084 -14300056 + AluJb SINE Alu 3 299 -13 2985 249 82 58 chrX 162674084 162674840 -14299300 - L2 LINE L2 -415 2898 2083 2541 90 3 3 chrX 162674840 162675196 -14298944 + L1PA8 LINE L1 5810 6165 -7 2985 249 82 58 chrX 162675196 162675310 -14298830 - L2 LINE L2 -1230 2083 1973 2340 84 7 0 chrX 162675407 162675704 -14298436 + AluSp SINE Alu 2 300 -13 281 311 41 41 chrX 162676185 162676404 -14297736 - MLT1J1 LTR MaLR -231 219 1 400 291 133 13 chrX 162677141 162677292 -14296848 + MER5B DNA MER1_type 6 174 -4 2348 41 38 54 chrX 162677318 162677634 -14296506 - AluY SINE Alu 0 311 1 249 315 43 0 chrX 162678563 162678655 -14295485 - L2 LINE L2 0 3313 3218 623 270 0 110 chrX 162678921 162679053 -14295087 + MER5B DNA MER1_type 1 105 -73 1957 125 0 39 chrX 162679053 162679358 -14294782 - AluJb SINE Alu -17 295 3 623 270 0 110 chrX 162679358 162679425 -14294715 + MER5B DNA MER1_type 105 178 0 867 145 34 191 chrX 162679436 162679698 -14294442 + MER58A DNA MER1_type 4 224 0 27 49 0 0 chrX 162679799 162679840 -14294300 + AT_rich Low_complexity Low_complexity 1 41 0 1650 216 261 10 chrX 162679873 162680489 -14293651 + LTR50 LTR ERVL 1 771 -24 10760 43 15 32 chrX 162680606 162681966 -14292174 + SVA Other Other 29 1366 -20 224 30 30 0 chrX 162681969 162682002 -14292138 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 650 251 54 18 chrX 162682003 162682282 -14291858 + L1MDa LINE L1 1625 1913 -4627 1145 207 28 0 chrX 162682892 162683109 -14291031 + MER58A DNA MER1_type 2 224 0 23 54 0 0 chrX 162683852 162683889 -14290251 + AT_rich Low_complexity Low_complexity 1 37 0 302 253 0 0 chrX 162684536 162684623 -14289517 + L1MC4 LINE L1 6617 6703 -1339 345 263 63 11 chrX 162684821 162684916 -14289224 + L2 LINE L2 3173 3272 0 669 160 206 0 chrX 162685628 162685759 -14288381 - MER5B DNA MER1_type -5 173 16 474 176 0 137 chrX 162685761 162685892 -14288248 + MER81 DNA DNA 2 114 0 1285 213 8 0 chrX 162688612 162688870 -14285270 - MLT1F1 LTR MaLR -307 260 1 205 318 91 18 chrX 162689734 162689844 -14284296 + L2 LINE L2 3155 3272 0 2234 110 7 0 chrX 162690022 162690387 -14283753 + AluSp SINE Alu 1 367 0 329 284 64 9 chrX 162690839 162690948 -14283192 - MER5A DNA MER1_type -68 121 7 986 229 47 5 chrX 162692722 162692936 -14281204 - MER58A DNA MER1_type 0 224 2 318 266 9 80 chrX 162693079 162693192 -14280948 + MIR3 SINE MIR 102 206 -2 328 240 92 5 chrX 162694136 162694332 -14279808 + L1M4 LINE L1 3068 3280 -2866 24 0 0 0 chrX 162694353 162694377 -14279763 + AT_rich Low_complexity Low_complexity 1 24 0 18612 31 1 2 chrX 162694453 162697473 -14276667 + L1PA3 LINE L1 3136 6155 0 447 289 19 66 chrX 162697508 162697719 -14276421 + MLT1J2 LTR MaLR 250 450 0 795 40 0 0 chrX 162697880 162697979 -14276161 + (TCTA)n Simple_repeat Simple_repeat 2 100 0 575 322 47 32 chrX 162698019 162698761 -14275379 + L1M4 LINE L1 3611 4363 -1783 333 102 0 0 chrX 162699101 162699160 -14274980 + (TG)n Simple_repeat Simple_repeat 2 60 0 231 379 65 8 chrX 162699399 162699523 -14274617 + MIR3 SINE MIR 57 187 -21 1226 278 53 13 chrX 162699689 162700067 -14274073 + MLT1I LTR MaLR 1 393 -16 1738 207 33 35 chrX 162700756 162701211 -14272929 - L1ME3A LINE L1 -8 6162 5709 334 205 0 0 chrX 162701234 162701312 -14272828 + L1PB3 LINE L1 5954 6031 -123 456 239 18 0 chrX 162701342 162701451 -14272689 - L1ME3A LINE L1 -498 5672 5562 582 109 50 10 chrX 162701452 162701553 -14272587 + MLT1H LTR MaLR 2 106 -443 4197 144 6 10 chrX 162701553 162702955 -14271185 + L1PB3 LINE L1 4492 5887 -267 1664 124 0 11 chrX 162703003 162703268 -14270872 + L1PB3 LINE L1 5891 6152 -2 4274 108 24 0 chrX 162703344 162703972 -14270168 + L1PA15 LINE L1 5523 6165 0 294 235 45 85 chrX 162704021 162704290 -14269850 + MLT1H LTR MaLR 92 422 -127 544 129 0 0 chrX 162704376 162704469 -14269671 - L1MA4A LINE L1 -23 6280 6188 7412 161 18 7 chrX 162704472 162706689 -14267451 - L1MA4A LINE L1 -181 6122 3881 537 259 56 0 chrX 162706740 162706883 -14267257 - MIR SINE MIR -61 201 51 378 0 0 0 chrX 162707562 162707604 -14266536 + (TG)n Simple_repeat Simple_repeat 2 43 0 201 290 130 42 chrX 162708713 162708951 -14265189 - L2 LINE L2 -830 2484 2226 1928 194 99 3 chrX 162709470 162709862 -14264278 - MER63B DNA MER1_type -6 430 1 294 29 0 0 chrX 162710438 162710473 -14263667 + (TG)n Simple_repeat Simple_repeat 1 35 0 2407 149 33 16 chrX 162712830 162713253 -14260887 - MSTB1 LTR MaLR -2 430 1 21 0 0 0 chrX 162713324 162713345 -14260795 + AT_rich Low_complexity Low_complexity 1 21 0 274 397 0 0 chrX 162713587 162713703 -14260437 - L2 LINE L2 -19 3253 3138 2366 73 10 7 chrX 162713972 162714274 -14259866 + AluY SINE Alu 1 303 -8 1026 180 62 19 chrX 162715173 162715384 -14258756 - MER58A DNA MER1_type -1 223 4 2652 99 0 5 chrX 162715603 162715985 -14258155 - L1PB1 LINE L1 -1 6150 5771 1370 86 0 5 chrX 162715985 162716172 -14257968 + L1PB1 LINE L1 5580 5765 -386 347 324 9 0 chrX 162716172 162716283 -14257857 - MIR3 SINE MIR -43 165 54 1186 274 90 47 chrX 162717109 162717619 -14256521 + MLT1H LTR MaLR 4 535 -14 632 320 78 16 chrX 162717710 162717801 -14256339 + MIR SINE MIR 3 87 -175 2430 219 66 11 chrX 162717801 162718363 -14255777 + MLT1E LTR MaLR 1 593 0 632 320 78 16 chrX 162718363 162718515 -14255625 + MIR SINE MIR 87 261 -1 14924 87 0 12 chrX 162718695 162720813 -14253327 + L1P LINE L1 2516 4608 -1538 1887 134 3 62 chrX 162720984 162721305 -14252835 + AluSx SINE Alu 1 302 -10 7176 51 1 1 chrX 162723582 162724823 -14249317 + L1PA7 LINE L1 4912 6152 -2 283 234 36 51 chrX 162724888 162725025 -14249115 + L1ME LINE L1 5758 5894 -270 23 0 0 0 chrX 162725039 162725062 -14249078 + AT_rich Low_complexity Low_complexity 1 23 0 379 378 0 0 chrX 162725307 162725418 -14248722 + MIR SINE MIR 30 140 -68 1047 167 19 33 chrX 162725558 162725768 -14248372 - MER3 DNA MER1_type -2 207 1 214 375 45 0 chrX 162726192 162726280 -14247860 - L2 LINE L2 0 3313 3222 1089 160 21 32 chrX 162726373 162726561 -14247579 - MER5A DNA MER1_type -1 188 3 496 319 36 11 chrX 162727083 162727268 -14246872 + MIR SINE MIR 2 191 -62 198 191 0 0 chrX 162727368 162727415 -14246725 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 261 0 0 0 chrX 162728875 162728904 -14245236 + (TG)n Simple_repeat Simple_repeat 2 30 0 2300 185 8 40 chrX 162730268 162730786 -14243354 - MLT1D LTR MaLR 0 505 5 607 210 167 0 chrX 162730929 162731091 -14243049 + MER5A DNA MER1_type 1 189 0 246 250 50 0 chrX 162731302 162731362 -14242778 - MIR SINE MIR -90 172 110 222 200 0 0 chrX 162731563 162731603 -14242537 + (TG)n Simple_repeat Simple_repeat 2 41 0 568 204 0 0 chrX 162732230 162732328 -14241812 + Charlie4 DNA MER1_type 1849 1946 -15 2156 110 0 23 chrX 162732735 162733036 -14241104 + AluSg SINE Alu 1 294 -16 293 131 16 0 chrX 162733351 162733412 -14240728 + (TA)n Simple_repeat Simple_repeat 1 62 0 2824 22 0 6 chrX 162733799 162734119 -14240021 + AluYb8 SINE Alu 1 318 0 357 174 265 0 chrX 162734807 162734905 -14239235 - L2 LINE L2 0 3313 3190 351 380 0 8 chrX 162734934 162735063 -14239077 - MER5B DNA MER1_type -45 133 6 1000 290 54 23 chrX 162735063 162735453 -14238687 - MLT1I LTR MaLR -5 404 3 411 225 101 11 chrX 162736095 162736184 -14237956 + L2 LINE L2 3168 3264 -8 326 338 0 0 chrX 162736644 162736798 -14237342 + CT-rich Low_complexity Low_complexity 1 154 0 648 281 20 10 chrX 162738194 162738393 -14235747 + LTR16A1 LTR ERVL 188 388 -69 21 57 0 0 chrX 162739838 162739873 -14234267 + GC_rich Low_complexity Low_complexity 1 35 0 748 159 7 0 chrX 162740225 162740376 -14233764 - L1MA7 LINE L1 -13 6278 6127 315 203 43 0 chrX 162740388 162740457 -14233683 + MLT1K LTR MaLR 517 588 0 32 26 0 0 chrX 162741258 162741297 -14232843 + AT_rich Low_complexity Low_complexity 1 39 0 296 259 191 30 chrX 162741729 162741860 -14232280 - L2 LINE L2 0 3272 3121 282 271 188 0 chrX 162742908 162743004 -14231136 - MIR SINE MIR -70 192 79 385 303 138 7 chrX 162744457 162744609 -14229531 - MER5B DNA MER1_type -6 172 1 655 313 34 38 chrX 162745608 162745907 -14228233 + LTR16A1 LTR ERVL 177 457 0 1248 185 9 0 chrX 162745990 162746201 -14227939 - AluJo SINE Alu -14 298 86 2309 127 5 5 chrX 162746582 162746952 -14227188 - L1MB3 LINE L1 -8 6175 5806 14023 138 25 4 chrX 162746954 162749264 -14224876 - L1M4c LINE L1 -4013 2371 13 212 241 0 69 chrX 162749457 162749515 -14224625 + L2 LINE L2 3252 3305 -8 2186 188 56 25 chrX 162750549 162751034 -14223106 - MLT1D LTR MaLR -5 500 1 632 295 31 22 chrX 162751171 162751476 -14222664 - MLT1H LTR MaLR -196 353 1 23 68 0 0 chrX 162751957 162752001 -14222139 + AT_rich Low_complexity Low_complexity 1 44 0 1955 195 23 99 chrX 162752577 162753132 -14221008 + MLT2B1 LTR ERVL 1 513 -7 486 304 158 25 chrX 162753143 162753383 -14220757 + L2 LINE L2 2701 2972 -342 209 248 208 10 chrX 162753383 162753484 -14220656 - L2 LINE L2 0 3313 3193 215 146 0 73 chrX 162755065 162755161 -14218979 + (TA)n Simple_repeat Simple_repeat 1 89 0 1124 268 63 68 chrX 162755401 162755493 -14218647 - L1MEd LINE L1 -4880 1239 1148 2114 91 0 0 chrX 162755493 162755767 -14218373 - AluSg SINE Alu -4 306 33 1124 268 63 68 chrX 162755767 162756516 -14217624 - L1MEd LINE L1 -4971 1148 528 225 272 48 48 chrX 162756967 162757070 -14217070 - MLT2E LTR ERVL -486 142 40 363 269 46 9 chrX 162757384 162757492 -14216648 - L1MEd LINE L1 -5991 128 17 586 318 57 14 chrX 162757822 162758102 -14216038 - L1MEd LINE L1 -5761 358 67 237 368 58 37 chrX 162758385 162758575 -14215565 + L3 LINE CR1 400 593 -984 1120 219 46 100 chrX 162758833 162759261 -14214879 - L1ME2 LINE L1 -7 6155 5752 1071 122 0 0 chrX 162760313 162760460 -14213680 - AluJb SINE Alu -16 296 150 539 146 35 14 chrX 162760857 162761337 -14212803 + (TA)n Simple_repeat Simple_repeat 1 489 0 460 222 56 19 chrX 162762142 162762250 -14211890 + MER94 DNA DNA 23 134 0 452 317 38 17 chrX 162762501 162762741 -14211399 + L1ME4a LINE L1 5611 5855 -266 22 0 0 0 chrX 162762799 162762821 -14211319 + AT_rich Low_complexity Low_complexity 1 22 0 655 244 32 42 chrX 162764178 162764461 -14209679 - L1MC5 LINE L1 -369 7592 7313 7216 126 16 2 chrX 162764578 162766099 -14208041 + L1MA2 LINE L1 4765 6304 0 530 260 59 18 chrX 162766119 162766363 -14207777 - L1MC4 LINE L1 -742 7219 7000 673 260 125 108 chrX 162766416 162766945 -14207195 - L1MC4 LINE L1 -928 6880 6361 2031 129 7 3 chrX 162766945 162767248 -14206892 - AluSx SINE Alu -8 304 1 673 260 125 108 chrX 162767248 162767483 -14206657 - L1MC4 LINE L1 -1447 6361 6131 728 84 9 0 chrX 162767483 162767590 -14206550 + L1MA6 LINE L1 6193 6300 0 673 260 125 108 chrX 162767590 162768045 -14206095 - L1MC4 LINE L1 -1677 6131 5672 1310 265 89 23 chrX 162768723 162769116 -14205024 + MLT1E LTR MaLR 1 419 -174 4596 110 26 3 chrX 162769126 162770095 -14204045 + L1MA3 LINE L1 4947 5936 -369 1579 148 4 0 chrX 162770104 162770375 -14203765 + L1MA3 LINE L1 6034 6305 0 589 185 65 98 chrX 162770382 162770566 -14203574 + MLT1E LTR MaLR 414 591 -2 220 318 146 9 chrX 162770605 162770715 -14203425 + MIR SINE MIR 132 256 -6 519 162 0 0 chrX 162770874 162770973 -14203167 + L1MA4 LINE L1 6191 6289 -11 483 283 182 0 chrX 162871793 162871991 -14102149 - MIR SINE MIR -26 236 3 670 245 101 11 chrX 162872208 162872396 -14101744 + MER3 DNA MER1_type 5 209 0 185 229 0 86 chrX 162872895 162872965 -14101175 - MIR3 SINE MIR -53 155 92 216 97 0 0 chrX 162873952 162873983 -14100157 + (TCTG)n Simple_repeat Simple_repeat 1 31 0 1765 155 7 18 chrX 162873983 162874267 -14099873 - AluJb SINE Alu -31 281 1 1990 149 0 0 chrX 162874578 162874866 -14099274 - AluJb SINE Alu -24 288 1 1241 261 118 8 chrX 162875069 162875467 -14098673 + MLT1J LTR MaLR 1 442 -69 2034 140 3 16 chrX 162875800 162876115 -14098025 + AluJo SINE Alu 1 311 -1 337 239 90 4 chrX 162876332 162876493 -14097647 + MIR SINE MIR 16 252 -10 217 188 21 21 chrX 162876501 162876549 -14097591 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 202 122 20 41 chrX 162876618 162876667 -14097473 + (TATG)n Simple_repeat Simple_repeat 2 49 0 369 0 0 0 chrX 162877478 162877519 -14096621 + (TG)n Simple_repeat Simple_repeat 2 42 0 1961 162 0 3 chrX 162877744 162878041 -14096099 + AluJb SINE Alu 1 296 -16 295 182 91 52 chrX 162878970 162879047 -14095093 + L2 LINE L2 3141 3220 -52 2622 137 49 5 chrX 162879379 162879787 -14094353 - MSTA LTR MaLR 0 428 3 2278 102 3 13 chrX 162880796 162881111 -14093029 + AluSx SINE Alu 1 312 0 252 250 14 0 chrX 162881228 162881300 -14092840 - MER116 DNA Mariner -7 73 1 2503 67 0 0 chrX 162881424 162881723 -14092417 + AluY SINE Alu 1 299 -12 2046 193 37 43 chrX 162882202 162882396 -14091744 - MER66B LTR ERV1 -27 459 265 2292 88 0 10 chrX 162882396 162882691 -14091449 - AluSg SINE Alu -18 292 1 2046 193 37 43 chrX 162882691 162882958 -14091182 - MER66B LTR ERV1 -221 265 1 1316 132 0 32 chrX 162882982 162883201 -14090939 - MER20 DNA MER1_type -4 215 4 2235 110 3 3 chrX 162883708 162884007 -14090133 + AluSq SINE Alu 1 299 -14 1835 155 10 13 chrX 162885106 162885415 -14088725 - AluJo SINE Alu -4 308 1 1428 169 71 4 chrX 162886152 162886407 -14087733 - AluJo SINE Alu -16 296 25 820 294 53 61 chrX 162886498 162886587 -14087553 + L1ME3A LINE L1 4487 4575 -1571 2425 65 0 3 chrX 162886587 162886881 -14087259 + AluY SINE Alu 1 293 -18 820 294 53 61 chrX 162886881 162886969 -14087171 + L1ME3A LINE L1 4575 4662 -1484 2200 53 0 25 chrX 162886969 162887252 -14086888 + AluY SINE Alu 34 309 -2 820 294 53 61 chrX 162887252 162887903 -14086237 + L1ME3A LINE L1 4662 5309 -837 580 234 59 36 chrX 162887914 162888136 -14086004 + L1ME3A LINE L1 5353 5579 -663 904 220 140 11 chrX 162888899 162889163 -14084977 + L1ME3A LINE L1 5868 6165 -5 1041 161 31 36 chrX 162890459 162890651 -14083489 + MER20 DNA MER1_type 29 219 0 776 234 64 67 chrX 162891072 162891147 -14082993 + L1M4 LINE L1 3230 3304 -2842 2511 67 0 0 chrX 162891147 162891445 -14082695 + AluY SINE Alu 1 298 -13 776 234 64 67 chrX 162891445 162891711 -14082429 + L1M4 LINE L1 3304 3570 -2576 2064 131 10 3 chrX 162891716 162892014 -14082126 + AluSx SINE Alu 1 300 -12 2156 72 65 0 chrX 162892055 162892332 -14081808 + AluY SINE Alu 17 311 0 22 0 0 0 chrX 162892332 162892354 -14081786 + AT_rich Low_complexity Low_complexity 1 22 0 310 326 104 65 chrX 162892950 162893383 -14080757 + L2 LINE L2 2817 3266 -6 251 309 85 0 chrX 162893964 162894058 -14080082 - L2 LINE L2 -2 3311 3210 354 348 82 13 chrX 162895560 162895718 -14078422 - MIR3 SINE MIR -24 184 16 449 221 193 14 chrX 162895721 162895866 -14078274 + MER5A DNA MER1_type 18 188 -1 1620 161 9 59 chrX 162896031 162896355 -14077785 + AluJo SINE Alu 1 308 -4 1579 133 11 15 chrX 162896757 162897021 -14077119 + L1MB7 LINE L1 5902 6164 -20 370 267 186 74 chrX 162899180 162899735 -14074405 - L1M2 LINE L1 -5761 1088 472 689 151 178 7 chrX 162899945 162900097 -14074043 + MER5B DNA MER1_type 1 178 0 237 83 0 0 chrX 162901180 162901216 -14072924 + (T)n Simple_repeat Simple_repeat 1 36 0 1043 237 69 96 chrX 162901558 162901836 -14072304 + L1ME4a LINE L1 5528 5812 -309 1352 132 4 40 chrX 162901836 162902063 -14072077 + MER20 DNA MER1_type 1 219 0 1043 237 69 96 chrX 162902063 162902246 -14071894 + L1ME4a LINE L1 5812 5972 -149 1191 214 85 58 chrX 162902246 162902680 -14071460 + MLT1J1 LTR MaLR 1 446 0 1043 237 69 96 chrX 162902680 162902824 -14071316 + L1ME4a LINE L1 5972 6118 -3 1928 154 10 7 chrX 162902927 162903233 -14070907 + AluJb SINE Alu 1 307 -5 2137 118 0 7 chrX 162903317 162903613 -14070527 - AluSg SINE Alu -16 294 1 968 138 73 82 chrX 162903626 162903768 -14070372 - L1MA9 LINE L1 0 6312 6170 330 26 0 0 chrX 162903768 162903807 -14070333 + (TG)n Simple_repeat Simple_repeat 2 40 0 968 138 73 82 chrX 162903807 162903836 -14070304 - L1MA9 LINE L1 -142 6170 6142 1621 135 42 31 chrX 162903836 162904124 -14070016 + AluJb SINE Alu 1 291 -21 968 138 73 82 chrX 162904124 162904183 -14069957 - L1MA9 LINE L1 -170 6142 6083 2468 67 7 0 chrX 162904369 162904669 -14069471 - AluY SINE Alu -9 302 1 364 244 30 67 chrX 162904787 162904887 -14069253 + HAL1b LINE L1 754 847 -501 2163 166 14 8 chrX 162904887 162905254 -14068886 + L1MC1 LINE L1 5965 6333 0 364 244 30 67 chrX 162905254 162905317 -14068823 + HAL1b LINE L1 847 911 -437 308 287 0 0 chrX 162905358 162905445 -14068695 + HAL1 LINE L1 2249 2335 -172 1764 264 114 14 chrX 162905457 162906108 -14068032 - MER20B DNA MER1_type -5 778 63 401 210 45 70 chrX 162906153 162906310 -14067830 + HAL1 LINE L1 2339 2491 -16 7675 35 0 1 chrX 162906326 162907582 -14066558 + L1PA5 LINE L1 4903 6153 -1 346 233 12 0 chrX 162907653 162907739 -14066401 + MIR SINE MIR 127 213 -49 186 395 0 39 chrX 162908776 162908849 -14065291 - MIR3 SINE MIR -75 133 66 1700 157 0 58 chrX 162908849 162909162 -14064978 - AluJo SINE Alu -17 295 1 186 395 0 39 chrX 162909162 162909217 -14064923 - MIR3 SINE MIR -142 66 10 2389 84 3 3 chrX 162909956 162910255 -14063885 - AluY SINE Alu -12 299 1 345 290 157 0 chrX 162910277 162910494 -14063646 - L3 LINE CR1 -6 1571 1321 2135 138 0 0 chrX 162910557 162910854 -14063286 + AluSx SINE Alu 6 302 -10 3756 166 54 7 chrX 162911066 162911766 -14062374 - L1MB5 LINE L1 0 6174 5442 2574 49 0 16 chrX 162911779 162912087 -14062053 - AluY SINE Alu -8 303 1 245 311 180 5 chrX 162912147 162912353 -14061787 + L2 LINE L2 2836 3077 -195 190 259 19 0 chrX 162912537 162912591 -14061549 - L3 LINE CR1 -640 937 883 683 275 152 9 chrX 162912705 162913021 -14061119 + L2 LINE L2 1734 2094 -1220 371 235 118 29 chrX 162913043 162913179 -14060961 + L2 LINE L2 3166 3313 0 429 272 230 21 chrX 162913205 162913440 -14060700 - L3 LINE CR1 -825 752 469 280 248 28 0 chrX 162914209 162914288 -14059852 + MIR SINE MIR 75 154 -73 2280 104 0 0 chrX 162914298 162914595 -14059545 + AluSc SINE Alu 1 297 -12 1522 159 42 4 chrX 162914759 162915023 -14059117 - MLT1A1 LTR MaLR -89 276 3 254 209 90 0 chrX 162915192 162915259 -14058881 + MIR SINE MIR 113 185 -77 2309 119 3 0 chrX 162916504 162916807 -14057333 + AluSx SINE Alu 1 304 -8 190 268 79 55 chrX 162916837 162916964 -14057176 + MIR SINE MIR 51 180 -82 241 258 0 0 chrX 162917213 162917279 -14056861 + (TA)n Simple_repeat Simple_repeat 2 67 0 1094 181 47 0 chrX 162917342 162917574 -14056566 - L1P LINE L1 -2751 3395 3153 1046 88 117 12 chrX 162917574 162917744 -14056396 + L1PA15 LINE L1 5973 6161 -4 198 0 0 0 chrX 162918136 162918158 -14055982 + (T)n Simple_repeat Simple_repeat 1 22 0 2347 119 11 8 chrX 162918474 162918828 -14055312 + THE1A LTR MaLR 1 355 0 527 206 160 0 chrX 162919064 162919195 -14054945 + MER5A DNA MER1_type 26 177 -12 1939 197 85 17 chrX 162919212 162919685 -14054455 - MLT1D LTR MaLR 0 505 1 251 306 45 51 chrX 162919880 162920037 -14054103 - MIR SINE MIR -78 184 29 672 202 143 18 chrX 162920093 162920261 -14053879 - MER5A DNA MER1_type 0 189 1 590 217 70 0 chrX 162920340 162920483 -14053657 - MER5A DNA MER1_type -9 180 28 635 289 119 31 chrX 162920503 162920763 -14053377 - LTR16C LTR ERVL -208 283 1 323 202 307 26 chrX 162920852 162920966 -14053174 + MLT1E2 LTR MaLR 6 151 -503 1242 69 0 0 chrX 162920986 162921131 -14053009 + AluY SINE Alu 153 297 -14 2016 193 56 49 chrX 162921135 162921621 -14052519 + MLT1E2 LTR MaLR 138 626 0 1417 176 87 65 chrX 162921745 162921938 -14052202 + MLT1D LTR MaLR 1 188 -279 2003 135 24 3 chrX 162921938 162922235 -14051905 + AluSx SINE Alu 1 303 -9 180 0 0 0 chrX 162922235 162922255 -14051885 + (GA)n Simple_repeat Simple_repeat 2 21 0 1417 176 87 65 chrX 162922255 162922477 -14051663 + MLT1D LTR MaLR 187 467 0 364 200 242 0 chrX 162923009 162923129 -14051011 + MER5A DNA MER1_type 32 180 -9 1465 102 0 0 chrX 162923129 162923316 -14050824 + AluSg/x SINE Alu 104 290 -22 27 29 0 0 chrX 162923375 162923409 -14050731 + AT_rich Low_complexity Low_complexity 1 34 0 2067 128 0 3 chrX 162923409 162923699 -14050441 - AluJo SINE Alu -23 289 1 365 261 134 14 chrX 162924000 162924142 -14049998 - L1ME LINE L1 -342 5779 5621 4740 139 29 50 chrX 162924638 162925524 -14048616 - L1MB8 LINE L1 -52 6126 5259 210 118 0 0 chrX 162925562 162925596 -14048544 + (TG)n Simple_repeat Simple_repeat 1 34 0 203 267 0 0 chrX 162926759 162926819 -14047321 + T-rich Low_complexity Low_complexity 1 60 0 189 280 27 27 chrX 162926872 162926947 -14047193 - MIR3 SINE MIR -26 182 108 235 358 63 0 chrX 162926975 162927070 -14047070 - MIR SINE MIR -78 130 30 198 0 0 0 chrX 162927828 162927850 -14046290 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 201 245 0 0 chrX 162929110 162929159 -14044981 + GA-rich Low_complexity Low_complexity 2 50 0 539 212 121 42 chrX 162929255 162929420 -14044720 + MER5B DNA MER1_type 1 178 0 988 238 121 59 chrX 162931004 162931550 -14042590 + L1ME4a LINE L1 5539 6118 -3 2494 57 3 0 chrX 162931589 162931890 -14042250 - AluY SINE Alu -9 302 1 812 239 66 61 chrX 162931985 162932077 -14042063 + L2 LINE L2 2631 2721 -592 1991 148 0 10 chrX 162932077 162932388 -14041752 + AluJo SINE Alu 1 308 -4 812 239 66 61 chrX 162932388 162932758 -14041382 + L2 LINE L2 2721 3099 -214 7216 59 0 0 chrX 162932857 162934443 -14039697 - L1PA5 LINE L1 -6 6148 4561 741 266 104 37 chrX 162934942 162935296 -14038844 - L1MC4a LINE L1 -1802 6006 5629 692 255 235 9 chrX 162935448 162935957 -14038183 + L2 LINE L2 2708 3298 -15 2281 118 0 10 chrX 162936309 162936623 -14037517 + AluSx SINE Alu 1 311 -1 747 271 100 37 chrX 162936724 162937324 -14036816 + L1MC/D LINE L1 5125 5764 -765 * 20425 31 2 1 chrX 162937298 162939739 -14034401 + L1P LINE L1 1796 4238 -1908 329 200 0 64 chrX 162939732 162939754 -14034386 + L1ME LINE L1 5720 5742 -379 * 2080 157 0 0 chrX 162939754 162940060 -14034080 + AluSx SINE Alu 1 306 -6 329 200 0 64 chrX 162940060 162940147 -14033993 + L1ME LINE L1 5742 5822 -299 1124 71 5 27 chrX 162940350 162940534 -14033606 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1394 144 137 50 chrX 162940536 162940813 -14033327 - AluJb SINE Alu -11 301 1 2457 72 0 0 chrX 162941039 162941322 -14032818 + AluSq SINE Alu 2 287 -26 180 97 0 0 chrX 162941322 162941353 -14032787 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1281 239 39 82 chrX 162941551 162942065 -14032075 - MLT1J LTR MaLR -3 508 17 202 342 25 0 chrX 162942508 162942587 -14031553 + MIR SINE MIR 2 82 -180 825 178 2 5 chrX 162942587 162942740 -14031400 + MLT1E3 LTR MaLR 102 257 -397 5733 78 128 96 chrX 162942750 162944130 -14030010 + MER57B-int LTR ERV1 6012 7487 -50 2407 57 0 3 chrX 162944130 162944452 -14029688 + AluSg SINE Alu 1 321 0 5733 78 128 96 chrX 162944452 162944505 -14029635 + MER57B-int LTR ERV1 7487 7537 0 2203 121 10 0 chrX 162944505 162944812 -14029328 + MER57B LTR ERV1 1 310 -124 1761 216 12 3 chrX 162944847 162945175 -14028965 + MLT1E3 LTR MaLR 294 624 0 985 188 106 29 chrX 162945206 162945413 -14028727 + MER58A DNA MER1_type 2 224 0 1152 233 38 27 chrX 162945458 162945750 -14028390 - LTR16C LTR ERVL -16 475 181 1512 232 61 53 chrX 162947131 162947623 -14026517 - MLT1J LTR MaLR 0 511 16 317 268 321 5 chrX 162948696 162948905 -14025235 - MLT1L LTR MaLR -221 394 120 1735 159 0 47 chrX 162949915 162950216 -14023924 - AluJo SINE Alu -24 288 2 272 308 13 0 chrX 162950485 162950563 -14023577 + MER91A DNA MER1_type 105 183 -13 925 152 136 0 chrX 162950787 162950971 -14023169 + MER3 DNA MER1_type 1 209 0 284 152 0 0 chrX 162950971 162951017 -14023123 - MER3 DNA MER1_type -162 47 2 934 261 116 4 chrX 162951018 162951286 -14022854 - LTR16C LTR ERVL -14 477 180 276 177 0 32 chrX 162951532 162951553 -14022587 - L1MC4a LINE L1 -1896 5912 5892 1904 143 17 3 chrX 162951553 162951846 -14022294 - AluJb SINE Alu -15 297 1 276 177 0 32 chrX 162951846 162951886 -14022254 - L1MC4a LINE L1 -1916 5892 5853 261 307 48 5 chrX 162952248 162952376 -14021764 + MIR SINE MIR 36 165 -63 385 202 53 17 chrX 162952783 162952896 -14021244 - MLT1I LTR MaLR -25 421 264 260 248 24 72 chrX 162952962 162953087 -14021053 - HAL1 LINE L1 -13 2494 2376 522 216 0 0 chrX 162953358 162953460 -14020680 - MER5A DNA MER1_type -84 105 4 827 215 321 3 chrX 162953462 162953839 -14020301 - L2 LINE L2 -406 2908 2412 1276 173 113 46 chrX 162954256 162954539 -14019601 - AluJo SINE Alu 0 302 1 852 213 40 0 chrX 162954623 162954797 -14019343 + MER5A DNA MER1_type 3 183 -6 429 149 196 88 chrX 162954878 162955026 -14019114 - MER5B DNA MER1_type -10 168 5 1139 103 5 62 chrX 162955666 162955865 -14018275 - MLT2A2 LTR ERVL 0 453 293 408 224 174 50 chrX 162956020 162956221 -14017919 + MIR SINE MIR 3 228 -34 2529 171 66 2 chrX 162956270 162956726 -14017414 - MLT1D LTR MaLR -2 503 19 199 303 105 0 chrX 162956928 162957004 -14017136 + L3 LINE CR1 1196 1279 -298 937 150 87 2 chrX 162957131 162957424 -14016716 - THE1B LTR MaLR 0 364 1 1511 179 111 130 chrX 162957529 162957748 -14016392 + MLT1H LTR MaLR 1 223 -326 2327 92 0 16 chrX 162957748 162958054 -14016086 - AluSc SINE Alu -8 301 1 1511 179 111 130 chrX 162958054 162958394 -14015746 + MLT1H LTR MaLR 223 549 0 2318 94 0 13 chrX 162958427 162958735 -14015405 + AluSx SINE Alu 1 304 -8 1650 196 3 26 chrX 162958885 162959084 -14015056 - AluJb SINE Alu -7 305 114 2018 121 59 51 chrX 162959084 162959456 -14014684 + THE1C LTR MaLR 1 375 0 1650 196 3 26 chrX 162959456 162959568 -14014572 - AluJb SINE Alu -198 114 1 2775 178 72 55 chrX 162959897 162960086 -14014054 - L1MD3 LINE L1 0 7995 7811 2321 102 3 0 chrX 162960086 162960390 -14013750 - AluSq SINE Alu -8 305 1 2775 178 72 55 chrX 162960390 162960768 -14013372 - L1MD3 LINE L1 -184 7811 7441 273 227 18 0 chrX 162960768 162960834 -14013306 - MLT1F1 LTR MaLR -445 122 67 1783 159 21 3 chrX 162960842 162961125 -14013015 + AluJo SINE Alu 6 293 -19 2415 69 0 13 chrX 162961129 162961433 -14012707 + AluY SINE Alu 1 300 -11 2775 178 72 55 chrX 162961433 162961722 -14012418 - L1MD3 LINE L1 -562 7433 6851 284 270 112 20 chrX 162961744 162961896 -14012244 + L2 LINE L2 1851 2016 -1298 967 287 39 63 chrX 162961910 162962342 -14011798 - L1MC5 LINE L1 -50 7911 7470 2015 120 28 0 chrX 162962342 162962625 -14011515 - AluSc SINE Alu -18 291 1 967 287 39 63 chrX 162962625 162962655 -14011485 - L1MC5 LINE L1 -491 7470 7441 1893 88 71 14 chrX 162962655 162962938 -14011202 + AluSq SINE Alu 1 299 -14 967 287 39 63 chrX 162962938 162963090 -14011050 - L1MC5 LINE L1 -520 7441 7311 560 61 41 10 chrX 162963096 162963194 -14010946 + (TAGA)n Simple_repeat Simple_repeat 4 104 0 2088 110 6 49 chrX 162963289 162963616 -14010524 - AluSq SINE Alu 0 313 1 366 324 114 9 chrX 162963619 162963829 -14010311 + L2 LINE L2 2238 2469 -845 410 278 68 30 chrX 162964104 162964237 -14009903 + MIR SINE MIR 13 150 -112 609 252 85 88 chrX 162964237 162964566 -14009574 + MER46C DNA MER2_type 11 338 0 277 248 0 48 chrX 162964566 162964671 -14009469 + MIR SINE MIR 153 252 -10 891 261 102 74 chrX 162964859 162965379 -14008761 - L1ME2 LINE L1 -96 6025 5484 1933 138 34 17 chrX 162965379 162965677 -14008463 - AluSx SINE Alu -9 303 1 891 261 102 74 chrX 162965677 162965782 -14008358 - L1ME2 LINE L1 -637 5484 5384 22 0 0 0 chrX 162965834 162965856 -14008284 + AT_rich Low_complexity Low_complexity 1 22 0 4514 180 44 2 chrX 162965920 162966731 -14007409 + MER21B LTR ERV1 19 863 0 2212 91 39 0 chrX 162966858 162967143 -14006997 - AluSx SINE Alu -16 296 1 477 214 140 39 chrX 162967549 162967727 -14006413 - MIR SINE MIR -9 253 58 2387 52 49 0 chrX 162968354 162968641 -14005499 - AluY SINE Alu -10 301 1 1164 184 0 29 chrX 162968753 162968797 -14005343 + MER58A DNA MER1_type 6 50 -2370 2113 105 7 3 chrX 162968797 162969091 -14005049 - AluSc SINE Alu -14 295 1 1164 184 0 29 chrX 162969091 162969253 -14004887 + MER58A DNA MER1_type 50 206 -18 756 174 80 0 chrX 162970243 162970381 -14003759 + FRAM SINE Alu 18 166 -10 243 0 0 0 chrX 162972331 162972358 -14001782 + (T)n Simple_repeat Simple_repeat 1 27 0 1842 133 38 24 chrX 162972946 162973239 -14000901 - AluJb SINE Alu -15 297 1 337 196 39 69 chrX 162973399 162973501 -14000639 + L2 LINE L2 3171 3269 -3 1478 188 156 34 chrX 162974254 162974670 -13999470 + MLT1C LTR MaLR 1 467 0 2182 119 3 0 chrX 162977378 162977681 -13996459 + AluSx SINE Alu 1 304 -8 240 35 0 0 chrX 162977681 162977710 -13996430 + (TA)n Simple_repeat Simple_repeat 1 29 0 391 241 11 103 chrX 162977811 162977985 -13996155 - MIR SINE MIR -2 260 103 1814 191 103 26 chrX 162978303 162978732 -13995408 - MLT1C LTR MaLR 0 467 6 1101 110 79 0 chrX 162979568 162979732 -13994408 - FRAM SINE Alu 0 176 1 356 282 31 30 chrX 162980422 162980557 -13993583 + MIR SINE MIR 18 151 -63 2440 25 14 0 chrX 162981941 162982216 -13991924 + L1PA4 LINE L1 5874 6152 -3 25 0 0 0 chrX 162982248 162982273 -13991867 + AT_rich Low_complexity Low_complexity 1 25 0 341 57 0 19 chrX 162982629 162982682 -13991458 + (TA)n Simple_repeat Simple_repeat 1 52 0 357 167 11 22 chrX 162982722 162982812 -13991328 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 264 219 98 12 chrX 162982815 162982897 -13991243 - L1MC4 LINE L1 -1339 6703 6615 241 288 88 0 chrX 162982827 162982907 -13991233 + L1MC4 LINE L1 6614 6700 -1342 * 2427 68 3 0 chrX 162984197 162984491 -13989649 - AluSg SINE Alu -15 295 1 2388 106 0 0 chrX 162985031 162985342 -13988798 + AluSx SINE Alu 1 311 -1 647 172 115 73 chrX 162986066 162986258 -13987882 - MER58C DNA MER1_type -15 200 1 663 249 59 6 chrX 162990215 162990384 -13983756 - MER5B DNA MER1_type 0 178 1 259 228 33 22 chrX 162991014 162991106 -13983034 + CT-rich Low_complexity Low_complexity 5 97 0 343 221 145 15 chrX 162991443 162991574 -13982566 + L1ME LINE L1 5636 5783 -338 304 222 0 122 chrX 162991644 162991694 -13982446 - L2 LINE L2 -9 3263 3227 1087 166 155 7 chrX 162991694 162991972 -13982168 + MER33 DNA MER1_type 3 321 -3 304 222 0 122 chrX 162991972 162992011 -13982129 - L2 LINE L2 -45 3227 3185 910 210 186 32 chrX 162992493 162992741 -13981399 - MLT1J LTR MaLR -1 510 302 1366 125 31 58 chrX 162992741 162992965 -13981175 - MER20 DNA MER1_type -1 218 1 910 210 186 32 chrX 162992965 162993125 -13981015 - MLT1J LTR MaLR -209 302 39 1060 154 58 43 chrX 162993539 162993747 -13980393 - MER20 DNA MER1_type -7 212 2 238 309 180 36 chrX 162994387 162994970 -13979170 + L2 LINE L2 1335 2001 -1313 2483 217 14 4 chrX 162995135 162995651 -13978489 + L1MA2 LINE L1 2429 2949 -3197 1913 145 33 44 chrX 162995643 162996009 -13978131 + L1MA2 LINE L1 3601 3962 -2184 * 7509 122 25 9 chrX 162995997 162998032 -13976108 + L1MA2 LINE L1 4233 6304 0 282 269 0 0 chrX 162998188 162998255 -13975885 - LTR16A LTR ERVL -13 437 371 4588 131 12 3 chrX 162998256 162998284 -13975856 + L1PA16 LINE L1 5487 5513 -653 2220 63 0 31 chrX 162998284 162998571 -13975569 + AluSx SINE Alu 33 310 -2 4588 131 12 3 chrX 162998571 162999214 -13974926 + L1PA16 LINE L1 5513 6164 -2 691 236 33 65 chrX 162999250 162999296 -13974844 - LTR16A LTR ERVL -80 370 324 1064 160 12 115 chrX 162999296 162999540 -13974600 - MER20 DNA MER1_type 0 219 1 691 236 33 65 chrX 162999540 162999768 -13974372 - LTR16A LTR ERVL -126 324 105 1899 168 0 0 chrX 163002881 163003167 -13970973 - AluJo SINE Alu -23 289 4 442 218 0 0 chrX 163003176 163003254 -13970886 - AluJ/FRAM SINE Alu -18 294 217 25 0 0 0 chrX 163003310 163003335 -13970805 + AT_rich Low_complexity Low_complexity 1 25 0 1557 183 101 71 chrX 163003785 163003833 -13970307 - MER39 LTR ERV1 0 707 662 897 266 120 31 chrX 163003833 163004348 -13969792 - MER34B LTR ERV1 0 565 5 1557 183 101 71 chrX 163004348 163004807 -13969333 - MER39 LTR ERV1 -45 662 7 916 227 11 6 chrX 163005637 163005813 -13968327 + MER5B DNA MER1_type 1 177 -1 194 203 0 17 chrX 163005972 163006031 -13968109 + T-rich Low_complexity Low_complexity 2 59 0 212 310 159 18 chrX 163006043 163006156 -13967984 + MIR SINE MIR 2 130 -132 1240 170 38 5 chrX 163006171 163006383 -13967757 + MER20 DNA MER1_type 1 219 0 584 274 68 5 chrX 163006389 163006579 -13967561 + MIR SINE MIR 21 222 -40 1254 102 48 16 chrX 163006984 163007171 -13966969 - L1PA10 LINE L1 -2 6166 5974 1805 88 42 11 chrX 163006987 163007250 -13966890 - L1PA10 LINE L1 -5 6163 5893 351 284 39 26 chrX 163007294 163007449 -13966691 - L2 LINE L2 -1018 2296 2140 472 145 0 0 chrX 163007803 163007886 -13966254 - L1MB8 LINE L1 0 6178 6096 6295 131 15 6 chrX 163008040 163009186 -13964954 - L1MA6 LINE L1 0 6300 5150 4496 156 16 7 chrX 163009188 163010015 -13964125 + L1MA6 LINE L1 4309 5142 -1004 241 130 56 74 chrX 163010403 163010457 -13963683 + FLAM SINE Alu 75 127 -6 1009 83 83 0 chrX 163010538 163010695 -13963445 - L1PA15 LINE L1 -1 6164 5995 197 182 114 0 chrX 163011129 163011173 -13962967 - L2 LINE L2 0 3313 3265 357 294 55 31 chrX 163011496 163011659 -13962481 - MER5B DNA MER1_type -10 168 2 557 263 29 11 chrX 163011683 163011858 -13962282 - MER5B DNA MER1_type 0 178 1 925 196 14 29 chrX 163012527 163012736 -13961404 + MER3 DNA MER1_type 4 209 0 396 0 0 0 chrX 163013204 163013248 -13960892 + (TG)n Simple_repeat Simple_repeat 2 45 0 382 202 164 0 chrX 163013485 163013589 -13960551 + MIR SINE MIR 128 248 -14 2823 103 21 28 chrX 163013622 163014057 -13960083 - Tigger2a DNA MER2_type -2 432 1 2893 167 21 6 chrX 163016185 163016718 -13957422 - L1MA6 LINE L1 0 6300 5760 417 293 30 24 chrX 163016761 163016925 -13957215 + L1ME2 LINE L1 195 359 -5846 322 310 35 17 chrX 163016933 163017049 -13957091 + L1ME2 LINE L1 261 378 -6018 328 271 0 102 chrX 163017103 163017280 -13956860 + L1ME2 LINE L1 508 666 -5539 1358 271 70 41 chrX 163017404 163018279 -13955861 + L1ME2 LINE L1 660 1559 -4837 354 74 0 0 chrX 163018283 163018337 -13955803 + (TTTAG)n Simple_repeat Simple_repeat 2 55 0 2203 95 0 3 chrX 163018337 163018622 -13955518 - AluSx SINE Alu -28 284 1 1059 296 58 18 chrX 163018628 163019175 -13954965 + L1ME2 LINE L1 1648 2216 -4180 251 241 92 0 chrX 163019239 163019326 -13954814 + L1 LINE L1 4723 4817 -1329 667 235 131 0 chrX 163019393 163019576 -13954564 + L1M4 LINE L1 4017 4223 -1923 541 151 11 11 chrX 163019577 163019670 -13954470 + L1M4 LINE L1 4868 4960 -1186 639 234 7 0 chrX 163019672 163019826 -13954314 + L1ME2 LINE L1 4636 4790 -1425 667 342 92 22 chrX 163019839 163020243 -13953897 - LTR16A LTR ERVL 0 450 19 1029 227 140 17 chrX 163020488 163020834 -13953306 + L1ME2 LINE L1 5825 6188 -45 2182 111 26 40 chrX 163021840 163022220 -13951920 + THE1C LTR MaLR 1 375 0 225 94 0 0 chrX 163022412 163022444 -13951696 + (TA)n Simple_repeat Simple_repeat 1 32 0 1110 156 64 0 chrX 163022444 163022662 -13951478 - L1MA7 LINE L1 -76 6215 5984 312 230 35 11 chrX 163022662 163022749 -13951391 + MER94 DNA DNA 24 112 -22 414 214 68 29 chrX 163024205 163024308 -13949832 - LTR16C LTR ERVL 0 491 385 241 234 160 21 chrX 163024559 163024653 -13949487 - MER5A DNA MER1_type -82 107 1 306 239 134 21 chrX 163026206 163026348 -13947792 - LTR16A1 LTR ERVL -153 304 147 486 239 44 29 chrX 163026493 163026734 -13947406 + MER45C DNA AcHobo 2 256 -697 460 247 18 125 chrX 163027032 163027291 -13946849 + MER45C DNA AcHobo 722 953 0 267 79 0 0 chrX 163027303 163027341 -13946799 + (TA)n Simple_repeat Simple_repeat 2 39 0 2187 98 17 0 chrX 163027341 163027636 -13946504 - AluSx SINE Alu -12 300 1 202 254 190 95 chrX 163027739 163027873 -13946267 - MIR SINE MIR 0 262 142 2196 118 18 3 chrX 163027873 163028212 -13945928 + L1PB4 LINE L1 5809 6152 -4 202 254 190 95 chrX 163028212 163028309 -13945831 - MIR SINE MIR -120 142 9 1850 165 54 0 chrX 163028309 163028678 -13945462 - Charlie5 DNA MER1_type 0 2624 2236 639 204 0 15 chrX 163028674 163028806 -13945334 - Charlie5 DNA MER1_type -2482 130 1 * 284 235 0 0 chrX 163028995 163029046 -13945094 - L2 LINE L2 -22 3291 3241 588 310 61 32 chrX 163029120 163029430 -13944710 - MLT1C LTR MaLR -1 466 148 261 235 59 0 chrX 163029399 163029450 -13944690 - 5S rRNA rRNA -60 61 8 * 895 200 40 0 chrX 163029462 163029637 -13944503 - MLT1C LTR MaLR -285 182 1 420 309 71 65 chrX 163030547 163030929 -13943211 + L1MC/D LINE L1 4951 5334 -812 2337 90 0 7 chrX 163030961 163031260 -13942880 - AluSg SINE Alu -11 299 3 635 341 39 14 chrX 163031403 163031761 -13942379 + L1MC/D LINE L1 5451 5817 -1991 465 341 20 16 chrX 163031952 163032201 -13941939 + MIR SINE MIR 13 262 0 1087 204 0 0 chrX 163032409 163032605 -13941535 - L1MB5 LINE L1 -7 6167 5972 2497 150 61 2 chrX 163032607 163033080 -13941060 - L1MB5 LINE L1 -418 5756 5256 443 205 0 24 chrX 163033182 163033265 -13940875 + MER58 DNA MER1_type 129 2414 -6 1126 230 9 0 chrX 163034239 163034452 -13939688 - MER58A DNA MER1_type -6 218 4 234 0 0 0 chrX 163034806 163034832 -13939308 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 236 35 103 chrX 163035206 163035380 -13938760 + L1 LINE L1 4887 5048 -1098 1899 134 20 17 chrX 163035597 163035889 -13938251 + AluJb SINE Alu 6 298 -14 699 296 112 33 chrX 163035937 163036389 -13937751 + L1ME4a LINE L1 5272 5780 -341 1124 204 107 47 chrX 163036389 163036585 -13937555 + MER58B DNA MER1_type 5 229 -2191 2407 76 0 3 chrX 163036585 163036886 -13937254 - AluY SINE Alu -9 302 3 1124 204 107 47 chrX 163036886 163037007 -13937133 + MER58B DNA MER1_type 229 341 0 699 296 112 33 chrX 163037007 163037147 -13936993 + L1ME4a LINE L1 5780 5907 -214 317 218 26 0 chrX 163037226 163037304 -13936836 + MER103 DNA DNA 76 155 -11 540 0 0 0 chrX 163037748 163037808 -13936332 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 1116 205 7 29 chrX 163037966 163038239 -13935901 - L1MD3 LINE L1 0 7995 7729 874 201 6 6 chrX 163038574 163038733 -13935407 + MER45A DNA AcHobo 20 178 0 22 35 0 0 chrX 163039098 163039127 -13935013 + AT_rich Low_complexity Low_complexity 1 29 0 291 243 14 0 chrX 163039644 163039714 -13934426 + MLT1C-int LTR MaLR 1299 1369 -2 1933 200 51 16 chrX 163039716 163040167 -13933973 + MLT1C LTR MaLR 1 467 0 360 251 5 112 chrX 163040414 163040629 -13933511 - L1ME4a LINE L1 -206 5915 5724 242 235 29 0 chrX 163041245 163041313 -13932827 + L1MC/D LINE L1 4471 4540 -1606 316 289 78 43 chrX 163041465 163041863 -13932277 + L1MC/D LINE L1 4678 5089 -1057 502 324 92 13 chrX 163042095 163042475 -13931665 + L1MC/D LINE L1 5355 5764 -2044 33 56 0 0 chrX 163042819 163042873 -13931267 + AT_rich Low_complexity Low_complexity 1 54 0 444 310 63 40 chrX 163042968 163043268 -13930872 - L1ME4a LINE L1 -236 5885 5579 3234 200 48 51 chrX 163044829 163045874 -13928266 - L1ME2 LINE L1 -1 6163 5118 222 37 0 0 chrX 163045885 163045912 -13928228 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 7527 11 0 0 chrX 163045939 163046794 -13927346 - L1PA2 LINE L1 0 6155 5301 3758 30 2 0 chrX 163046794 163047255 -13926885 + L1P LINE L1 4875 5336 -810 256 238 124 0 chrX 163047307 163047412 -13926728 - L1ME2 LINE L1 -1099 5047 4930 1930 202 17 6 chrX 163047412 163047773 -13926367 - MLT1A1 LTR MaLR 0 365 1 916 167 24 0 chrX 163048014 163048182 -13925958 - MER5B DNA MER1_type 0 178 7 275 331 167 33 chrX 163048294 163048593 -13925547 + L3 LINE CR1 615 953 -624 * 652 318 27 5 chrX 163048578 163048801 -13925339 + MIR SINE MIR 13 240 -22 226 86 0 0 chrX 163048938 163048973 -13925167 + L1MC3 LINE L1 7650 7684 -101 2157 121 7 13 chrX 163048974 163049281 -13924859 + AluSx SINE Alu 1 305 -7 538 151 0 59 chrX 163049306 163049425 -13924715 + L1MC3 LINE L1 7666 7777 -8 2443 198 45 11 chrX 163049632 163050167 -13923973 - L1MD3 LINE L1 -9 7986 7434 618 147 0 0 chrX 163050191 163050286 -13923854 - L1MC1 LINE L1 -18 6315 6221 2202 84 49 0 chrX 163050713 163051000 -13923140 - AluSq SINE Alu -12 301 1 290 304 161 18 chrX 163051019 163051131 -13923009 + MIR SINE MIR 13 140 -122 2084 150 13 0 chrX 163053141 163053448 -13920692 - AluJo SINE Alu 0 312 2 274 136 0 0 chrX 163053719 163053763 -13920377 - MER58 DNA MER1_type -1 2419 2376 * 304 270 30 20 chrX 163053762 163053862 -13920278 - MER58 DNA MER1_type -2149 271 171 1393 175 71 62 chrX 163053939 163054391 -13919749 + Charlie4a DNA MER1_type 26 481 -27 538 259 42 48 chrX 163054903 163055092 -13919048 + MIR SINE MIR 75 262 0 183 163 70 23 chrX 163057369 163057412 -13916728 - MIR SINE MIR -82 126 82 248 318 191 12 chrX 163058513 163058686 -13915454 - MIR SINE MIR -3 259 56 592 236 25 70 chrX 163058885 163058970 -13915170 - MER106A DNA MER1_type -5 231 144 2362 96 16 0 chrX 163058970 163059273 -13914867 - AluSx SINE Alu -4 308 1 592 236 25 70 chrX 163059273 163059429 -13914711 - MER106A DNA MER1_type -92 144 1 476 218 238 14 chrX 163059825 163059972 -13914168 - MER5A DNA MER1_type -1 188 9 1352 138 43 5 chrX 163060049 163060259 -13913881 + MER20 DNA MER1_type 1 218 -1 2307 92 0 20 chrX 163061534 163061840 -13912300 + AluSx SINE Alu 1 300 -12 268 233 0 0 chrX 163061840 163061900 -13912240 + MER116 DNA Mariner 21 80 0 234 152 0 0 chrX 163062233 163062266 -13911874 + Alu SINE Alu 217 249 -53 1546 146 18 58 chrX 163062266 163062540 -13911600 - AluJo SINE Alu -49 263 1 463 216 45 0 chrX 163065268 163065356 -13908784 + MER58 DNA MER1_type 1 92 -249 1194 155 122 20 chrX 163065363 163065608 -13908532 - AluJo SINE Alu -21 291 22 762 189 15 8 chrX 163065707 163065839 -13908301 + FLAM_A SINE Alu 1 133 0 483 92 0 0 chrX 163065955 163066020 -13908120 - MADE1 DNA Mariner 0 80 16 207 0 0 0 chrX 163066949 163066972 -13907168 + (TTG)n Simple_repeat Simple_repeat 2 24 0 508 193 187 21 chrX 163067066 163067222 -13906918 - MER5A DNA MER1_type 0 189 4 561 93 0 70 chrX 163067226 163067312 -13906828 - MADE1 DNA Mariner 0 80 1 954 180 6 0 chrX 163067321 163067482 -13906658 - MER5B DNA MER1_type 0 178 17 828 175 94 0 chrX 163067630 163067801 -13906339 + MER20 DNA MER1_type 33 219 0 4423 61 53 0 chrX 163067888 163068414 -13905726 - MER41A LTR ERV1 0 554 1 206 254 16 16 chrX 163068497 163068560 -13905580 + MIR3 SINE MIR 121 183 -25 627 153 153 68 chrX 163068580 163068757 -13905383 + L1MB3 LINE L1 5992 6183 0 558 317 11 16 chrX 163068856 163069042 -13905098 + L2 LINE L2 3118 3302 -11 445 245 55 55 chrX 163069214 163069377 -13904763 - MER5B DNA MER1_type -15 163 1 751 244 20 5 chrX 163070516 163070704 -13903436 - MER5B DNA MER1_type 0 178 3 2073 136 0 7 chrX 163071283 163071578 -13902562 + AluSx SINE Alu 1 293 -19 207 0 0 0 chrX 163071659 163071682 -13902458 + (T)n Simple_repeat Simple_repeat 1 23 0 995 147 91 141 chrX 163074102 163074210 -13899930 - MER33 DNA MER1_type -2261 324 212 2234 98 0 7 chrX 163074210 163074506 -13899634 - AluSg SINE Alu -16 294 1 995 147 91 141 chrX 163074506 163074535 -13899605 - MER33 DNA MER1_type -2373 212 183 1780 143 44 20 chrX 163074535 163074829 -13899311 - AluJo SINE Alu -11 301 1 995 147 91 141 chrX 163074829 163075031 -13899109 - MER33 DNA MER1_type -2402 183 1 632 282 64 20 chrX 163075353 163075409 -13898731 + MIR SINE MIR 18 70 -192 558 125 0 0 chrX 163075409 163075489 -13898651 + MADE1 DNA Mariner 1 80 0 632 282 64 20 chrX 163075489 163075634 -13898506 + MIR SINE MIR 70 228 -34 1648 159 45 21 chrX 163075707 163075997 -13898143 - AluJo SINE Alu -15 297 1 909 189 109 0 chrX 163075998 163076199 -13897941 - MER33 DNA MER1_type -101 223 1 632 282 64 20 chrX 163076521 163076577 -13897563 + MIR SINE MIR 18 70 -192 558 125 0 0 chrX 163076577 163076657 -13897483 + MADE1 DNA Mariner 1 80 0 632 282 64 20 chrX 163076657 163076802 -13897338 + MIR SINE MIR 70 228 -34 1887 149 3 7 chrX 163076875 163077171 -13896969 - AluJo SINE Alu -15 297 3 535 291 115 63 chrX 163077222 163077710 -13896430 - L2 LINE L2 -49 3223 2702 2504 57 0 3 chrX 163077710 163078008 -13896132 - AluY SINE Alu -14 297 1 535 291 115 63 chrX 163078008 163078064 -13896076 - L2 LINE L2 -570 2702 2650 990 114 103 29 chrX 163078473 163078648 -13895492 + MER5A DNA MER1_type 2 189 0 2198 175 67 48 chrX 163079294 163079790 -13894350 - MLT1D LTR MaLR 0 505 1 260 333 125 7 chrX 163079790 163079934 -13894206 + MIR SINE MIR 95 255 -7 435 246 40 23 chrX 163080314 163080489 -13893651 + L1MC5 LINE L1 7560 7737 -224 1851 159 10 16 chrX 163080550 163080859 -13893281 - AluJb SINE Alu -3 309 3 3506 155 24 16 chrX 163082359 163082939 -13891201 - L1MB5 LINE L1 -8 6166 5582 224 265 133 5 chrX 163083542 163083656 -13890484 - MIR SINE MIR -70 192 20 2120 123 0 38 chrX 163083665 163083981 -13890159 - AluSx SINE Alu -3 309 6 292 266 0 51 chrX 163084006 163084085 -13890055 + L2 LINE L2 3190 3264 -8 615 326 30 21 chrX 163084698 163084812 -13889328 - MIR SINE MIR -4 258 146 813 167 35 0 chrX 163084812 163084956 -13889184 - L1MB5 LINE L1 -1 6173 6025 615 326 30 21 chrX 163084956 163085077 -13889063 - MIR SINE MIR -116 146 21 343 263 0 0 chrX 163085435 163085515 -13888625 + MER96 DNA MER1_type? 2 81 -94 523 189 11 0 chrX 163085830 163085925 -13888215 - MER94 DNA DNA -3 131 36 2131 124 10 3 chrX 163085932 163086238 -13887902 + AluJb SINE Alu 1 308 -4 697 200 8 0 chrX 163086554 163086684 -13887456 + MER3 DNA MER1_type 1 131 -78 457 280 172 6 chrX 163086736 163086893 -13887247 - MER5A DNA MER1_type 0 189 7 618 224 29 53 chrX 163086913 163087083 -13887057 + MER5B DNA MER1_type 5 170 -8 1233 166 29 5 chrX 163087278 163087540 -13886600 - AluJo SINE Alu 0 339 73 215 270 22 79 chrX 163087952 163088041 -13886099 - MER5A DNA MER1_type -63 126 43 * 267 318 18 18 chrX 163087962 163088072 -13886068 + MER5B DNA MER1_type 69 178 0 236 333 0 0 chrX 163088072 163088138 -13886002 + L2 LINE L2 3247 3312 -1 2847 193 11 18 chrX 163088171 163088731 -13885409 + L1MD3 LINE L1 7440 7995 0 2081 178 40 33 chrX 163088893 163089348 -13884792 - L1MB7 LINE L1 -11 6173 5716 228 67 0 0 chrX 163090182 163090212 -13883928 + (CA)n Simple_repeat Simple_repeat 1 30 0 496 322 131 69 chrX 163090483 163090993 -13883147 - L3 LINE CR1 -600 977 403 2049 142 0 0 chrX 163090993 163091288 -13882852 + AluJo SINE Alu 2 296 -16 496 322 131 69 chrX 163091288 163091534 -13882606 - L3 LINE CR1 -1174 403 174 32 26 0 0 chrX 163091721 163091760 -13882380 + AT_rich Low_complexity Low_complexity 1 39 0 2846 131 32 53 chrX 163091760 163092032 -13882108 - L1MA6 LINE L1 -7 6293 6036 2502 49 3 0 chrX 163092032 163092320 -13881820 - AluSp SINE Alu -24 289 1 2846 131 32 53 chrX 163092320 163092573 -13881567 - L1MA6 LINE L1 -264 6036 5779 1216 175 30 105 chrX 163092620 163092952 -13881188 - AluJb SINE Alu -5 307 1 213 324 14 0 chrX 163093078 163093149 -13880991 - MIR SINE MIR -72 190 119 2082 123 54 0 chrX 163093272 163093589 -13880551 + MER44D DNA MER2_type 1 604 -5 1856 153 13 33 chrX 163095405 163095712 -13878428 + AluJb SINE Alu 1 301 -11 235 85 43 0 chrX 163096177 163096224 -13877916 + (TTG)n Simple_repeat Simple_repeat 1 49 0 2246 97 13 0 chrX 163096917 163097226 -13876914 + L1PB1 LINE L1 5479 5791 -360 742 193 12 6 chrX 163097228 163097399 -13876741 + (TATG)n Simple_repeat Simple_repeat 1 172 0 2734 77 14 3 chrX 163097412 163097764 -13876376 + L1PB1 LINE L1 5795 6150 -1 321 247 157 0 chrX 163098578 163098667 -13875473 - MIR SINE MIR -1 261 159 306 258 218 0 chrX 163098661 163098785 -13875355 + MIR SINE MIR 42 192 -70 * 2004 215 50 21 chrX 163098807 163099326 -13874814 + L1ME1 LINE L1 5628 6165 -1 468 272 40 50 chrX 163099863 163100065 -13874075 - MER63A DNA MER1_type -10 200 1 322 281 172 8 chrX 163100532 163100660 -13873480 + L2 LINE L2 3164 3312 -1 192 337 48 12 chrX 163100826 163100909 -13873231 + MIR3 SINE MIR 120 205 -3 2808 166 21 48 chrX 163101111 163101486 -13872654 + MLT1D LTR MaLR 1 360 -145 1518 130 9 0 chrX 163101486 163101709 -13872431 + AluJo SINE Alu 85 309 -3 2808 166 21 48 chrX 163101709 163101850 -13872290 + MLT1D LTR MaLR 360 503 -2 459 261 163 7 chrX 163101886 163102039 -13872101 - MER5A DNA MER1_type -3 186 10 424 316 96 43 chrX 163102153 163102362 -13871778 + L3b LINE CR1 1120 1339 -244 374 236 149 7 chrX 163102404 163102541 -13871599 - MIR3 SINE MIR -14 194 38 485 217 29 86 chrX 163102614 163102789 -13871351 + L1ME3 LINE L1 5998 6162 -2 1111 238 63 17 chrX 163102823 163103083 -13871057 + L1ME3A LINE L1 5709 6034 -136 2274 106 0 0 chrX 163103083 163103375 -13870765 + AluSx SINE Alu 1 292 -20 1111 238 63 17 chrX 163103375 163103518 -13870622 + L1ME3A LINE L1 6034 6169 -1 1528 124 58 0 chrX 163103600 163103842 -13870298 - L1MA5A LINE L1 -4 6293 6038 1597 219 87 61 chrX 163104376 163104781 -13869359 + MER68 LTR ERV1 1 425 -137 2122 120 43 0 chrX 163104781 163105080 -13869060 - AluSx SINE Alu 0 312 1 1597 219 87 61 chrX 163105080 163105212 -13868928 + MER68 LTR ERV1 425 552 -10 611 265 29 19 chrX 163105257 163105453 -13868687 + L1MC4a LINE L1 5497 5694 -469 1153 126 0 40 chrX 163105454 163105628 -13868512 + FRAM SINE Alu 1 164 -12 339 202 128 64 chrX 163105655 163105858 -13868282 + L1MC4a LINE L1 5708 5923 -1885 988 199 56 5 chrX 163106124 163106320 -13867820 + MER58A DNA MER1_type 16 221 -3 705 307 48 4 chrX 163106919 163107150 -13866990 - MIR SINE MIR -1 261 21 2355 102 3 0 chrX 163107217 163107520 -13866620 - AluSx SINE Alu -8 304 1 243 342 153 5 chrX 163107635 163107825 -13866315 - MIR SINE MIR -40 222 5 2754 116 47 24 chrX 163107896 163108318 -13865822 - MSTB1 LTR MaLR 0 432 1 2086 129 3 0 chrX 163108329 163108624 -13865516 - AluSx SINE Alu -16 296 1 238 307 39 71 chrX 163109093 163109220 -13864920 + L2 LINE L2 2508 2630 -684 1659 221 137 6 chrX 163109278 163109849 -13864291 - L1ME2 LINE L1 -220 5944 5436 1272 285 56 17 chrX 163109994 163110404 -13863736 - LTR16A LTR ERVL 0 450 25 265 311 59 8 chrX 163110456 163110575 -13863565 + L2 LINE L2 2827 2951 -321 180 0 0 0 chrX 163111591 163111611 -13862529 + (A)n Simple_repeat Simple_repeat 1 20 0 2391 81 0 10 chrX 163111614 163111922 -13862218 + AluY SINE Alu 6 310 -1 211 255 0 0 chrX 163112152 163112203 -13861937 + (TGGG)n Simple_repeat Simple_repeat 1 51 0 2373 107 0 0 chrX 163113112 163113422 -13860718 + AluSx SINE Alu 1 310 -2 3747 159 90 44 chrX 163114106 163115494 -13858646 + L1MB8 LINE L1 4742 6178 0 21 36 0 0 chrX 163115650 163115678 -13858462 + AT_rich Low_complexity Low_complexity 1 28 0 748 184 8 8 chrX 163115678 163115803 -13858337 - FLAM_C SINE Alu -17 126 2 212 291 18 0 chrX 163117015 163117070 -13857070 - MIR SINE MIR -151 111 56 231 153 69 0 chrX 163117224 163117296 -13856844 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 266 292 42 17 chrX 163117300 163117420 -13856720 + (CATG)n Simple_repeat Simple_repeat 3 125 0 227 333 0 0 chrX 163117525 163117588 -13856552 + (CATA)n Simple_repeat Simple_repeat 1 63 0 199 302 0 16 chrX 163117896 163117959 -13856181 - L2 LINE L2 -9 3304 3243 1171 235 76 9 chrX 163118298 163118639 -13855501 - L1ME2 LINE L1 -1217 4929 4566 2680 126 31 62 chrX 163118894 163119540 -13854600 - MER4D LTR ERV1 -7 896 1 198 103 0 0 chrX 163120255 163120284 -13853856 + (T)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chrX 163121816 163121845 -13852295 + AT_rich Low_complexity Low_complexity 1 29 0 346 259 75 27 chrX 163122730 163122877 -13851263 - MIR SINE MIR -16 246 93 278 361 0 0 chrX 163123445 163123517 -13850623 + L2 LINE L2 3201 3272 0 187 216 0 98 chrX 163124172 163124223 -13849917 + MIR SINE MIR 19 64 -144 230 354 46 23 chrX 163124492 163124622 -13849518 - L3 LINE CR1 -946 631 499 1742 139 19 52 chrX 163124660 163124969 -13849171 - AluJo SINE Alu -13 299 1 343 296 112 26 chrX 163124982 163125134 -13849006 - L3 LINE CR1 -1059 518 354 652 178 10 0 chrX 163125316 163125417 -13848723 - FRAM SINE Alu -75 101 1 198 256 0 0 chrX 163126089 163126128 -13848012 - MER5A DNA MER1_type -1 188 150 22 80 0 0 chrX 163126308 163126358 -13847782 + AT_rich Low_complexity Low_complexity 1 50 0 249 294 4 32 chrX 163126986 163127071 -13847069 - MIR SINE MIR -102 106 30 441 0 0 0 chrX 163127175 163127224 -13846916 + (TG)n Simple_repeat Simple_repeat 2 50 0 5094 195 71 2 chrX 163127504 163128475 -13845665 - MER45B DNA AcHobo -2 1038 1 198 0 0 0 chrX 163128520 163128542 -13845598 + (A)n Simple_repeat Simple_repeat 1 22 0 232 333 105 18 chrX 163129034 163129148 -13844992 - MIR SINE MIR -79 183 60 217 276 49 57 chrX 163129429 163129552 -13844588 + MIR3 SINE MIR 33 154 -54 2517 119 72 12 chrX 163129842 163130245 -13843895 - MSTC LTR MaLR -1 427 1 1094 153 23 0 chrX 163130953 163131130 -13843010 + FRAM SINE Alu 1 175 -1 1673 164 29 7 chrX 163131665 163131815 -13842325 - AluJo SINE Alu -31 281 121 348 24 0 0 chrX 163131815 163131856 -13842284 + (TATG)n Simple_repeat Simple_repeat 2 42 0 1673 164 29 7 chrX 163131856 163131980 -13842160 - AluJo SINE Alu -191 121 1 2150 160 89 49 chrX 163133169 163133618 -13840522 + MLT1C LTR MaLR 1 467 0 703 214 38 19 chrX 163133916 163134075 -13840065 + MER5B DNA MER1_type 16 177 -1 1134 178 58 5 chrX 163134134 163134342 -13839798 + MER20 DNA MER1_type 1 219 0 2148 114 14 0 chrX 163134584 163134881 -13839259 + AluSx SINE Alu 1 301 -11 2145 106 3 35 chrX 163135726 163136038 -13838102 + AluSx SINE Alu 1 302 -10 229 390 38 0 chrX 163136379 163136484 -13837656 + L3 LINE CR1 445 553 -1024 2390 86 7 0 chrX 163136507 163136810 -13837330 + AluSp SINE Alu 1 305 -8 183 283 0 0 chrX 163136822 163136868 -13837272 + L2 LINE L2 3268 3313 0 652 290 80 25 chrX 163136889 163137165 -13836975 + L3 LINE CR1 567 857 -720 633 304 79 25 chrX 163137545 163137825 -13836315 - L2 LINE L2 -3 3310 3016 236 209 179 0 chrX 163138798 163138865 -13835275 - MER116 DNA Mariner -1 79 1 21 0 0 0 chrX 163140711 163140732 -13833408 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chrX 163141076 163141100 -13833040 + (GA)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chrX 163141836 163141858 -13832282 + AT_rich Low_complexity Low_complexity 1 22 0 463 171 0 0 chrX 163142582 163142658 -13831482 + MER116 DNA Mariner 3 78 -2 406 145 120 8 chrX 163142746 163142835 -13831305 - L1MB3 LINE L1 0 6183 6096 24 96 0 0 chrX 163145061 163145134 -13829006 + AT_rich Low_complexity Low_complexity 1 73 0 2485 67 0 13 chrX 163146050 163146362 -13827778 + AluY SINE Alu 2 309 -2 1012 220 6 0 chrX 163146681 163146863 -13827277 - MER58A DNA MER1_type 0 224 42 21 36 0 0 chrX 163147439 163147467 -13826673 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chrX 163147633 163147657 -13826483 + (T)n Simple_repeat Simple_repeat 1 24 0 2173 94 0 88 chrX 163148264 163148433 -13825707 - AluSx SINE Alu -10 302 175 2143 121 0 38 chrX 163148433 163148747 -13825393 - AluSq SINE Alu -11 302 1 2173 94 0 88 chrX 163148747 163148908 -13825232 - AluSx SINE Alu -137 175 1 730 307 28 20 chrX 163149118 163149369 -13824771 + MIR SINE MIR 9 261 -1 201 218 18 18 chrX 163149845 163149900 -13824240 - L2 LINE L2 -8 3264 3210 252 198 30 59 chrX 163150914 163151015 -13823125 + CT-rich Low_complexity Low_complexity 2 99 0 2151 189 28 2 chrX 163152008 163152405 -13821735 + L1MB7 LINE L1 5778 6184 0 412 241 124 71 chrX 163152866 163153148 -13820992 - MER46C DNA MER2_type -37 301 5 186 118 0 0 chrX 163153578 163153612 -13820528 + (T)n Simple_repeat Simple_repeat 1 34 0 25 0 0 0 chrX 163153963 163153988 -13820152 + GC_rich Low_complexity Low_complexity 1 25 0 608 224 164 0 chrX 163154184 163154336 -13819804 + MER5A DNA MER1_type 10 186 -3 34 0 0 0 chrX 163155831 163155865 -13818275 + AT_rich Low_complexity Low_complexity 1 34 0 830 205 82 0 chrX 163156753 163156924 -13817216 + MER58A DNA MER1_type 40 224 0 390 247 70 86 chrX 163157357 163157431 -13816709 + MER5A DNA MER1_type 7 81 -108 903 152 0 0 chrX 163157431 163157556 -13816584 + FLAM_A SINE Alu 4 128 -5 390 247 70 86 chrX 163157556 163157667 -13816473 + MER5A DNA MER1_type 81 189 0 1615 238 111 65 chrX 163157942 163158509 -13815631 - MLT1E LTR MaLR 0 593 1 1703 95 0 76 chrX 163158938 163159201 -13814939 + AluSg/x SINE Alu 68 310 0 741 123 67 78 chrX 163159288 163159467 -13814673 + MER5B DNA MER1_type 2 178 0 685 101 62 39 chrX 163159511 163159640 -13814500 + MER20 DNA MER1_type 88 219 0 347 304 122 23 chrX 163160266 163160480 -13813660 - L1ME1 LINE L1 -5 6161 5927 187 328 0 16 chrX 163161194 163161258 -13812882 + L2 LINE L2 3209 3271 -1 5736 201 75 34 chrX 163161908 163162033 -13812107 - Charlie1a DNA MER1_type -1307 1454 1335 2065 118 3 64 chrX 163162033 163162177 -13811963 + AluSx SINE Alu 1 152 -160 2370 85 7 0 chrX 163162177 163162483 -13811657 + AluSp SINE Alu 1 308 -5 2065 118 3 64 chrX 163162483 163162668 -13811472 + AluSx SINE Alu 152 310 -2 5736 201 75 34 chrX 163162668 163163936 -13810204 - Charlie1a DNA MER1_type -1426 1335 5 185 222 37 19 chrX 163164018 163164072 -13810068 + MER5A DNA MER1_type 124 178 -11 814 197 0 0 chrX 163164073 163164215 -13809925 + AluSg/x SINE Alu 157 298 -14 1307 183 131 51 chrX 163164246 163164558 -13809582 - MER58B DNA MER1_type 0 341 5 739 204 0 77 chrX 163164568 163164749 -13809391 - MER5B DNA MER1_type -11 167 1 1243 137 13 44 chrX 163164865 163164887 -13809253 - MER20 DNA MER1_type 0 219 198 3888 108 35 52 chrX 163164887 163165483 -13808657 - MER4B LTR ERV1 0 610 23 2374 87 0 0 chrX 163165483 163165782 -13808358 - AluSc SINE Alu -10 299 1 3888 108 35 52 chrX 163165782 163165805 -13808335 - MER4B LTR ERV1 -587 23 1 1243 137 13 44 chrX 163165805 163166008 -13808132 - MER20 DNA MER1_type -21 198 1 1248 199 9 0 chrX 163166041 163166257 -13807883 - MER20 DNA MER1_type 0 219 2 201 74 0 0 chrX 163166498 163166525 -13807615 + (TG)n Simple_repeat Simple_repeat 1 27 0 1402 149 5 5 chrX 163166975 163167196 -13806944 + AluSg/x SINE Alu 83 303 -7 474 236 164 36 chrX 163167888 163168053 -13806087 - MER5A DNA MER1_type -1 188 3 1778 151 3 31 chrX 163168248 163168564 -13805576 + AluJo SINE Alu 1 308 0 2557 62 0 0 chrX 163168599 163168908 -13805232 - AluY SINE Alu -2 309 1 292 300 20 20 chrX 163168910 163169010 -13805130 + L2 LINE L2 2749 2848 -466 1031 144 44 0 chrX 163170280 163170461 -13803679 + MER3 DNA MER1_type 21 209 0 1645 89 0 5 chrX 163170832 163171046 -13803094 - AluY SINE Alu -17 294 82 252 0 0 0 chrX 163171332 163171360 -13802780 + (T)n Simple_repeat Simple_repeat 1 28 0 189 293 28 57 chrX 163172335 163172441 -13801699 + MIR SINE MIR 64 166 -96 1996 116 0 43 chrX 163172814 163173117 -13801023 + AluSx SINE Alu 1 290 -22 711 174 81 12 chrX 163174094 163174255 -13799885 + MER5B DNA MER1_type 2 173 -5 380 317 54 7 chrX 163174471 163174638 -13799502 + MIR SINE MIR 15 191 -62 188 336 69 69 chrX 163175420 163175536 -13798604 - L2 LINE L2 -6 3266 3151 444 213 0 0 chrX 163175539 163175614 -13798526 + MER58 DNA MER1_type 1 75 -140 948 93 0 14 chrX 163175614 163175754 -13798386 - AluSg/x SINE Alu 0 312 175 3783 108 28 51 chrX 163176487 163177098 -13797042 - MER4A LTR ERV1 0 600 4 269 236 0 0 chrX 163178087 163178142 -13795998 + MIR SINE MIR 68 122 -86 642 188 146 83 chrX 163179995 163180054 -13794086 - MER5C DNA MER1_type -3 321 267 2140 108 7 3 chrX 163180054 163180351 -13793789 + AluSg1 SINE Alu 1 298 -11 642 188 146 83 chrX 163180351 163180579 -13793561 - MER5C DNA MER1_type -57 267 16 377 230 0 0 chrX 163181178 163181252 -13792888 + MER116 DNA Mariner 3 76 -4 567 283 12 18 chrX 163181795 163181961 -13792179 - MER5B DNA MER1_type 0 178 14 3436 188 27 8 chrX 163182568 163183196 -13790944 + MER82 DNA MER2_type 14 653 0 234 0 0 0 chrX 163184422 163184448 -13789692 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chrX 163186998 163187021 -13787119 + AT_rich Low_complexity Low_complexity 1 23 0 1486 169 63 106 chrX 163188430 163188809 -13785331 - MLT1A1 LTR MaLR 0 365 3 21 0 0 0 chrX 163194100 163194121 -13780019 + AT_rich Low_complexity Low_complexity 1 21 0 198 188 42 21 chrX 163195119 163195167 -13778973 - MIR3 SINE MIR -25 183 135 2073 113 0 32 chrX 163195332 163195641 -13778499 + AluSx SINE Alu 1 299 -13 230 203 25 89 chrX 163196205 163196284 -13777856 - MIR SINE MIR -36 226 153 207 0 0 0 chrX 163196474 163196497 -13777643 + (A)n Simple_repeat Simple_repeat 1 23 0 183 255 43 0 chrX 163198429 163198476 -13775664 - MIR SINE MIR -1 261 213 883 226 23 81 chrX 163198502 163198763 -13775377 + MER46C DNA MER2_type 5 250 -88 283 301 158 0 chrX 163198798 163198931 -13775209 - MIR SINE MIR -61 147 26 537 230 173 58 chrX 163199358 163199584 -13774556 - MIR SINE MIR -3 259 8 315 213 27 27 chrX 163201412 163201487 -13772653 - LTR33 LTR ERVL -368 153 79 2125 121 3 13 chrX 163202148 163202455 -13771685 + AluSx SINE Alu 1 304 -8 317 285 171 13 chrX 163202813 163202971 -13771169 - MIR SINE MIR -59 203 21 2206 95 31 7 chrX 163203694 163203988 -13770152 + AluSx SINE Alu 1 301 -11 2493 64 0 0 chrX 163204121 163204417 -13769723 + AluY SINE Alu 1 296 -15 27 29 0 0 chrX 163204800 163204834 -13769306 + AT_rich Low_complexity Low_complexity 1 34 0 254 286 32 0 chrX 163206044 163206107 -13768033 - L2 LINE L2 -3 3269 3205 2065 124 7 16 chrX 163206544 163206850 -13767290 - AluSx SINE Alu -9 303 1 808 197 0 0 chrX 163207626 163207758 -13766382 + FLAM_A SINE Alu 1 132 -1 359 323 150 0 chrX 163208320 163208487 -13765653 + L3 LINE CR1 191 382 -1195 1905 145 3 13 chrX 163209261 163209564 -13764576 - AluJb SINE Alu -11 301 2 436 311 86 66 chrX 163209781 163210083 -13764057 - L2 LINE L2 -19 3253 2946 387 239 58 53 chrX 163212170 163212358 -13761782 + L1MC4 LINE L1 7842 8030 -12 345 291 109 27 chrX 163212681 163212858 -13761282 + L1ME4a LINE L1 5884 6084 -37 1585 158 77 0 chrX 163212858 163213155 -13760985 + MER33 DNA MER1_type 5 324 0 345 291 109 27 chrX 163213155 163213197 -13760943 + L1ME4a LINE L1 6084 6121 0 288 310 133 0 chrX 163213394 163213507 -13760633 + MIR SINE MIR 23 150 -58 1909 139 10 27 chrX 163214094 163214395 -13759745 - AluJo SINE Alu -16 296 1 560 254 175 52 chrX 163214585 163215049 -13759091 + L1MC1 LINE L1 5257 5777 -2031 618 124 261 33 chrX 163215393 163215546 -13758594 - L1MC3 LINE L1 -1505 6280 6093 1698 182 30 62 chrX 163215553 163215578 -13758562 - L1M4 LINE L1 -947 5199 5175 2045 123 7 7 chrX 163215578 163215879 -13758261 + AluSx SINE Alu 1 301 -11 1698 182 30 62 chrX 163215879 163216292 -13757848 - L1M4 LINE L1 -971 5175 4775 1728 188 58 54 chrX 163216385 163216833 -13757307 + LTR7 LTR ERV1 1 450 0 2322 71 3 14 chrX 163217250 163217545 -13756595 - AluSc SINE Alu -17 292 1 2323 97 0 0 chrX 163217593 163217891 -13756249 - AluSx SINE Alu -14 298 1 774 209 124 0 chrX 163217984 163218161 -13755979 - MER3 DNA MER1_type -9 200 2 186 167 0 0 chrX 163218349 163218385 -13755755 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2472 70 0 7 chrX 163218639 163218938 -13755202 - AluSp SINE Alu -16 297 1 2018 136 3 0 chrX 163220253 163220539 -13753601 + AluSx SINE Alu 1 287 -25 570 68 27 0 chrX 163220731 163220804 -13753336 - Alu SINE Alu -16 295 221 1364 155 0 9 chrX 163220804 163221017 -13753123 + L1MC1 LINE L1 6123 6333 0 272 284 42 32 chrX 163221267 163221362 -13752778 + MIR SINE MIR 44 139 -69 202 279 0 0 chrX 163221381 163221424 -13752716 + L2 LINE L2 3211 3253 -19 313 251 80 31 chrX 163222306 163222469 -13751671 + L1ME4a LINE L1 5736 5906 -215 1130 188 48 0 chrX 163224103 163224310 -13749830 - MER20 DNA MER1_type 0 219 3 1231 303 94 61 chrX 163225715 163225787 -13748353 - L3 LINE CR1 -225 1352 1284 711 244 52 36 chrX 163225787 163225980 -13748160 - MER117 DNA MER1_type 0 197 2 1231 303 94 61 chrX 163225980 163226713 -13747427 - L3 LINE CR1 -293 1284 520 361 274 44 9 chrX 163226715 163226828 -13747312 - L2 LINE L2 -6 3307 3191 199 319 0 28 chrX 163227020 163227092 -13747048 + MIR SINE MIR 183 252 -10 210 372 97 26 chrX 163227200 163227313 -13746827 - L3 LINE CR1 -1436 141 21 39417 78 10 9 chrX 163227320 163228467 -13745673 - L1PA6 LINE L1 0 6154 5009 2273 114 3 0 chrX 163228467 163228775 -13745365 - AluSp SINE Alu -4 309 1 39417 78 10 9 chrX 163228775 163233769 -13740371 - L1PA6 LINE L1 -1145 5009 11 31 0 0 0 chrX 163233982 163234013 -13740127 + AT_rich Low_complexity Low_complexity 1 31 0 1148 198 61 49 chrX 163234283 163234611 -13739529 - MLT1D LTR MaLR -167 338 7 1810 122 0 0 chrX 163234934 163235179 -13738961 + AluSx SINE Alu 1 245 -67 780 145 172 59 chrX 163235202 163235287 -13738853 - MER3 DNA MER1_type 0 209 135 2149 72 18 96 chrX 163235287 163235620 -13738520 - AluYb8 SINE Alu -11 307 1 780 145 172 59 chrX 163235620 163235720 -13738420 - MER3 DNA MER1_type -74 135 3 234 0 0 0 chrX 163236167 163236193 -13737947 + (T)n Simple_repeat Simple_repeat 1 26 0 664 212 7 0 chrX 163236445 163236582 -13737558 - MER58B DNA MER1_type -8 333 196 801 271 45 0 chrX 163236979 163237200 -13736940 - MIR SINE MIR -7 255 25 2056 141 0 3 chrX 163237359 163237658 -13736482 - AluJb SINE Alu -14 298 1 2164 127 0 3 chrX 163239229 163239528 -13734612 - AluSx SINE Alu -14 298 1 2114 172 102 19 chrX 163240200 163240630 -13733510 - MLT1C LTR MaLR -1 466 1 2237 98 11 0 chrX 163240655 163240942 -13733198 - AluSq SINE Alu -23 290 1 270 0 0 0 chrX 163241337 163241367 -13732773 + (T)n Simple_repeat Simple_repeat 1 30 0 2265 100 7 0 chrX 163242921 163243211 -13730929 - AluSx SINE Alu -20 292 1 2451 73 7 0 chrX 163244238 163244538 -13729602 - AluSg SINE Alu -8 302 1 2189 93 21 10 chrX 163244576 163244866 -13729274 - AluSg SINE Alu -17 293 1 2270 116 0 3 chrX 163244924 163245234 -13728906 - AluSx SINE Alu -3 309 1 1001 139 32 0 chrX 163245282 163245440 -13728700 - AluSp SINE Alu -14 299 137 22 0 0 0 chrX 163245501 163245523 -13728617 + AT_rich Low_complexity Low_complexity 1 22 0 1843 96 118 0 chrX 163247433 163247705 -13726435 - AluSc SINE Alu -5 304 1 181 105 26 53 chrX 163249810 163249848 -13724292 - MIR SINE MIR -14 248 212 232 318 106 0 chrX 163249888 163249973 -13724167 - MIR SINE MIR -163 99 6 1842 155 10 7 chrX 163250065 163250362 -13723778 - AluJo SINE Alu -14 298 1 469 237 81 50 chrX 163250915 163251113 -13723027 - L1MC5 LINE L1 -35 7926 7723 678 193 199 11 chrX 163251164 163251340 -13722800 + MER3 DNA MER1_type 1 209 0 2121 95 13 36 chrX 163251703 163252007 -13722133 + AluSx SINE Alu 1 297 -15 21 36 0 0 chrX 163253257 163253285 -13720855 + AT_rich Low_complexity Low_complexity 1 28 0 2242 118 0 16 chrX 163253482 163253795 -13720345 + AluSx SINE Alu 1 308 -4 268 288 91 8 chrX 163254437 163254569 -13719571 + MIR SINE MIR 89 231 -31 181 283 19 0 chrX 163254552 163254605 -13719535 + L2 LINE L2 3219 3272 0 * 450 256 31 8 chrX 163255058 163255187 -13718953 - MIR SINE MIR -124 138 7 265 163 0 0 chrX 163255490 163255533 -13718607 - L2 LINE L2 -9 3304 3262 1780 121 132 53 chrX 163256968 163257330 -13716810 + L1MB7 LINE L1 5744 6139 -45 2067 141 0 3 chrX 163257330 163257627 -13716513 + AluJb SINE Alu 1 296 -16 1780 121 132 53 chrX 163257627 163257644 -13716496 + L1MB7 LINE L1 6139 6153 -31 2012 128 21 3 chrX 163258152 163258442 -13715698 + AluJb SINE Alu 1 295 -17 23 0 0 0 chrX 163258538 163258561 -13715579 + AT_rich Low_complexity Low_complexity 1 23 0 248 333 75 8 chrX 163258662 163258782 -13715358 + L2 LINE L2 2918 3045 -227 297 75 0 0 chrX 163260188 163260228 -13713912 + (A)n Simple_repeat Simple_repeat 1 40 0 1107 153 63 5 chrX 163260284 163260474 -13713666 + MER3 DNA MER1_type 9 209 0 216 165 39 19 chrX 163261700 163261803 -13712337 + (TA)n Simple_repeat Simple_repeat 2 106 0 402 267 182 0 chrX 163261815 163261991 -13712149 + L1ME4a LINE L1 5869 6076 -45 297 0 0 0 chrX 163261991 163262024 -13712116 + (CAA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chrX 163262039 163262060 -13712080 + AT_rich Low_complexity Low_complexity 1 21 0 2231 98 3 0 chrX 163262787 163263074 -13711066 - AluSx SINE Alu -20 292 5 1018 211 73 0 chrX 163263412 163263616 -13710524 - MER20 DNA MER1_type 0 219 1 846 163 116 23 chrX 163263677 163263849 -13710291 - MER20 DNA MER1_type 0 219 32 685 182 130 19 chrX 163263873 163264027 -13710113 + AluJo SINE Alu 121 291 -21 594 168 6 95 chrX 163264028 163264110 -13710030 + MER53 DNA DNA 25 84 -105 1037 94 13 184 chrX 163264110 163264343 -13709797 - 7SK RNA RNA 0 193 1 594 168 6 95 chrX 163264343 163264439 -13709701 + MER53 DNA DNA 84 187 -2 229 209 23 0 chrX 163264439 163264479 -13709661 - MER20 DNA MER1_type -178 41 1 1957 145 3 0 chrX 163264561 163264857 -13709283 + AluJo SINE Alu 1 297 -15 393 277 87 39 chrX 163264869 163265134 -13709006 + L1MC4a LINE L1 5588 5775 -346 23 33 0 0 chrX 163265269 163265299 -13708841 + AT_rich Low_complexity Low_complexity 1 30 0 207 69 0 0 chrX 163265418 163265447 -13708693 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1806 129 0 7 chrX 163265938 163266210 -13707930 + L1PA13 LINE L1 5887 6156 -7 247 91 0 0 chrX 163266222 163266255 -13707885 + L1MC1 LINE L1 6285 6317 -16 494 164 85 32 chrX 163266262 163266356 -13707784 + MLT1F1 LTR MaLR 429 517 -73 207 0 0 0 chrX 163266356 163266379 -13707761 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 10223 60 3 2 chrX 163266379 163268379 -13705761 - L1PA4 LINE L1 -11 6144 4139 494 164 85 32 chrX 163268379 163268397 -13705743 + MLT1F1 LTR MaLR 516 568 -22 186 133 0 0 chrX 163268911 163268941 -13705199 + (CA)n Simple_repeat Simple_repeat 1 30 0 1618 135 112 4 chrX 163268949 163269209 -13704931 - AluSx SINE Alu -24 288 1 261 0 0 0 chrX 163269787 163269816 -13704324 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2300 100 7 0 chrX 163270709 163271009 -13703131 + AluSq SINE Alu 1 302 -11 1869 111 3 45 chrX 163271319 163271608 -13702532 - AluJb SINE Alu -35 277 1 804 286 81 31 chrX 163271638 163271995 -13702145 - L2 LINE L2 -361 2953 2579 5848 121 12 1 chrX 163272210 163273048 -13701092 - HSMAR2 DNA Mariner -225 1077 231 1158 174 0 0 chrX 163273052 163273236 -13700904 - AluJo SINE Alu -8 304 121 2368 100 0 0 chrX 163273248 163273558 -13700582 - AluSx SINE Alu -2 310 1 1041 240 80 0 chrX 163273688 163273963 -13700177 - LTR16A1 LTR ERVL 0 457 161 232 184 0 0 chrX 163274554 163274592 -13699548 + L2 LINE L2 3257 3294 -19 2260 82 3 0 chrX 163274840 163275131 -13699009 - AluY SINE Alu -17 294 3 7594 57 0 0 chrX 163276671 163277752 -13696388 - L1PA5 LINE L1 -3 6151 5073 2034 111 17 14 chrX 163277788 163278270 -13695870 + AluSx SINE Alu 1 312 0 487 187 28 9 chrX 163278287 163278394 -13695746 + L2 LINE L2 3202 3310 -3 959 74 72 0 chrX 163278532 163278718 -13695422 - MER11A LTR ERVK -973 293 1 587 224 51 56 chrX 163279472 163279686 -13694454 + L1MC5 LINE L1 7603 7815 -146 912 238 19 5 chrX 163279700 163279906 -13694234 - MER58A DNA MER1_type -15 209 1 316 245 69 20 chrX 163279909 163280011 -13694129 + L1MC5 LINE L1 7807 7913 -48 2221 135 0 0 chrX 163280106 163280410 -13693730 - AluSx SINE Alu -8 304 1 1793 136 22 51 chrX 163280989 163281305 -13692835 - AluJo SINE Alu -5 307 1 2506 71 3 0 chrX 163281638 163281946 -13692194 - AluY SINE Alu -2 309 1 3324 129 23 11 chrX 163282645 163283212 -13690928 + L1P LINE L1 2500 3302 -2844 2497 46 0 20 chrX 163283213 163283518 -13690622 + AluY SINE Alu 1 299 -12 5372 113 13 1 chrX 163283518 163284277 -13689863 - Tigger1 DNA MER2_type -109 2309 1542 843 164 15 8 chrX 163284277 163284411 -13689729 - AluJo SINE Alu -176 136 2 3337 110 53 4 chrX 163284411 163284955 -13689185 - Tigger1 DNA MER2_type -864 1554 984 2154 115 10 7 chrX 163285887 163286191 -13687949 + AluSx SINE Alu 6 310 -2 676 262 25 74 chrX 163287121 163287365 -13686775 + MIR SINE MIR 20 251 -11 614 316 107 0 chrX 163287633 163287858 -13686282 - MIR SINE MIR 0 262 14 6271 114 14 3 chrX 163288582 163290360 -13683780 - L1PA8 LINE L1 -3 6169 4392 438 209 55 0 chrX 163291795 163291886 -13682254 - MLT1L LTR MaLR -180 435 340 183 319 0 55 chrX 163292582 163292673 -13681467 - L2 LINE L2 -782 2532 2447 5398 138 4 1 chrX 163292824 163293647 -13680493 + L1P LINE L1 12 836 -5310 1422 143 88 17 chrX 163293780 163294074 -13680066 + MER33 DNA MER1_type 10 324 0 1049 210 32 23 chrX 163294082 163294301 -13679839 + MER58A DNA MER1_type 2 222 -2 554 214 90 7 chrX 163294367 163294512 -13679628 - MIR SINE MIR -15 247 91 219 36 0 0 chrX 163294617 163294645 -13679495 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 236 277 44 9 chrX 163295652 163295742 -13678398 + MIR SINE MIR 46 137 -71 1850 144 0 51 chrX 163295759 163296071 -13678069 + AluJo SINE Alu 1 296 -16 225 222 93 37 chrX 163296262 163296370 -13677770 - L2 LINE L2 -1350 1964 1851 1393 195 26 36 chrX 163299014 163299317 -13674823 + MLT1B LTR MaLR 75 374 -16 2850 101 3 8 chrX 163299317 163299693 -13674447 + THE1C LTR MaLR 1 374 -1 768 231 102 5 chrX 163299693 163299909 -13674231 + MLT1J LTR MaLR 255 491 -20 1499 141 4 9 chrX 163300113 163300340 -13673800 - MLT1B LTR MaLR 0 390 165 350 170 128 0 chrX 163300360 163300454 -13673686 - AluSp SINE Alu -59 244 139 21 0 0 0 chrX 163300645 163300666 -13673474 + GC_rich Low_complexity Low_complexity 1 21 0 241 276 197 0 chrX 163301174 163301301 -13672839 - MIR3 SINE MIR -23 185 34 1543 188 81 3 chrX 163301346 163301655 -13672485 - MER58B DNA MER1_type 0 341 9 1109 161 43 0 chrX 163302190 163302376 -13671764 - MER20 DNA MER1_type -1 218 25 705 141 14 70 chrX 163302558 163302700 -13671440 - MER20 DNA MER1_type -84 135 2 405 284 78 64 chrX 163302700 163302918 -13671222 + MIR SINE MIR 30 250 -12 2336 81 0 14 chrX 163304528 163304825 -13669315 + AluSg SINE Alu 1 293 -17 383 38 19 19 chrX 163304827 163304880 -13669260 - L1P LINE L1 -862 5284 5232 * 5971 22 0 0 chrX 163304877 163305548 -13668592 + L1PA3 LINE L1 5458 6128 -27 2920 118 15 18 chrX 163305664 163306122 -13668018 - L1M1 LINE L1 -542 5763 5307 2124 112 7 3 chrX 163306123 163306419 -13667721 - AluSq SINE Alu -16 297 1 333 0 0 0 chrX 163306419 163306456 -13667684 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1097 144 22 11 chrX 163306926 163307106 -13667034 - MLT1B LTR MaLR -208 182 1 1778 121 107 7 chrX 163307576 163307856 -13666284 - AluSg SINE Alu -2 308 1 321 319 66 6 chrX 163307867 163308033 -13666107 + MIR SINE MIR 73 248 -14 261 374 30 0 chrX 163308325 163308424 -13665716 - MIR SINE MIR -146 116 15 1176 224 110 0 chrX 163310337 163310592 -13663548 + MER119 DNA MER1_type 1 283 -300 1987 98 18 7 chrX 163311024 163311310 -13662830 - AluSg SINE Alu -21 289 1 352 257 101 51 chrX 163311593 163311889 -13662251 + L1MEc LINE L1 1324 1530 -5329 * 1593 337 20 13 chrX 163311886 163312488 -13661652 + L1M2a LINE L1 6 611 -6557 1842 175 10 7 chrX 163312635 163312932 -13661208 - MER77 LTR ERV1 -307 298 1 196 357 60 20 chrX 163312952 163313191 -13660949 - L2 LINE L2 -1303 2011 1760 2286 112 0 3 chrX 163313191 163313504 -13660636 + AluSx SINE Alu 1 312 0 196 357 60 20 chrX 163313504 163313516 -13660624 - L2 LINE L2 -1554 1760 1750 1993 151 77 6 chrX 163313567 163313904 -13660236 + THE1B LTR MaLR 1 361 -3 368 245 158 0 chrX 163314488 163314627 -13659513 + L2 LINE L2 3152 3312 -1 3977 166 10 12 chrX 163315388 163315529 -13658611 + L1MB7 LINE L1 5478 5618 -566 1750 155 118 9 chrX 163315529 163315858 -13658282 - MLT1A1 LTR MaLR 0 365 1 3977 166 10 12 chrX 163315858 163316405 -13657735 + L1MB7 LINE L1 5618 6165 -19 1093 168 37 53 chrX 163316502 163316746 -13657394 - L1MA4A LINE L1 0 6303 6064 22 0 0 0 chrX 163317529 163317551 -13656589 + AT_rich Low_complexity Low_complexity 1 22 0 400 262 52 52 chrX 163318746 163318956 -13655184 - LTR16C LTR ERVL -149 342 133 2441 229 61 17 chrX 163321387 163322458 -13651682 - L1MA4A LINE L1 -340 5960 4849 1298 171 68 39 chrX 163326100 163326410 -13647730 - MER33 DNA MER1_type 0 324 6 974 167 4 84 chrX 163327392 163327465 -13646675 + MER20 DNA MER1_type 8 85 -134 189 0 0 0 chrX 163327465 163327486 -13646654 + (TGG)n Simple_repeat Simple_repeat 1 21 0 974 167 4 84 chrX 163327486 163327639 -13646501 + MER20 DNA MER1_type 85 216 -3 808 265 19 14 chrX 163327730 163327941 -13646199 + MIR SINE MIR 15 226 -36 377 227 30 49 chrX 163329886 163330016 -13644124 + MLT1H LTR MaLR 94 196 -254 233 224 45 15 chrX 163330410 163330477 -13643663 + MLT1L LTR MaLR 536 604 -11 528 242 81 43 chrX 163330535 163330738 -13643402 - MIR SINE MIR -33 229 16 1360 264 91 22 chrX 163330966 163331416 -13642724 - LTR16C LTR ERVL 0 491 11 183 143 0 0 chrX 163332150 163332178 -13641962 - MIR SINE MIR -18 244 217 494 230 171 13 chrX 163332258 163332410 -13641730 - MER5A DNA MER1_type 0 189 14 833 218 47 6 chrX 163332442 163332612 -13641528 - MER5B DNA MER1_type 0 178 2 225 286 14 0 chrX 163332620 163332690 -13641450 - MIR SINE MIR -55 153 83 226 263 0 26 chrX 163333048 163333124 -13641016 + CT-rich Low_complexity Low_complexity 4 77 0 192 302 0 0 chrX 163333124 163333177 -13640963 - L2 LINE L2 -14 3258 3206 508 296 87 10 chrX 163333427 163333623 -13640517 - MIR SINE MIR -6 256 46 335 248 79 40 chrX 163334388 163334489 -13639651 - L2 LINE L2 -1 3271 3167 380 291 37 22 chrX 163334770 163334904 -13639236 + MIR3 SINE MIR 3 138 -70 13076 102 119 70 chrX 163334908 163336195 -13637945 + Tigger1 DNA MER2_type 3 1224 -1194 825 152 15 8 chrX 163336195 163336327 -13637813 + FLAM_C SINE Alu 1 133 -10 13076 102 119 70 chrX 163336327 163337089 -13637051 + Tigger1 DNA MER2_type 1224 2306 -112 2281 53 0 21 chrX 163337089 163337372 -13636768 - AluY SINE Alu -12 299 23 13076 102 119 70 chrX 163337372 163337491 -13636649 + Tigger1 DNA MER2_type 2306 2418 0 342 288 6 0 chrX 163337988 163338009 -13636131 + (TA)n Simple_repeat Simple_repeat 2 21 -144 565 93 13 0 chrX 163338009 163338084 -13636056 + MADE1 DNA Mariner 2 77 -3 342 288 6 0 chrX 163338084 163338225 -13635915 + (TA)n Simple_repeat Simple_repeat 21 165 0 215 266 22 49 chrX 163338376 163338560 -13635580 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 274 241 17 0 chrX 163338671 163338729 -13635411 + MLT1K LTR MaLR 530 588 0 261 0 0 0 chrX 163338782 163338811 -13635329 + (CA)n Simple_repeat Simple_repeat 1 29 0 368 245 158 0 chrX 163339366 163339505 -13634635 - L2 LINE L2 -1 3312 3152 1074 94 137 57 chrX 163339929 163340011 -13634129 + HSMAR2 DNA Mariner 2 76 -1226 2202 109 3 0 chrX 163340011 163340317 -13633823 - AluSp SINE Alu 0 307 1 1074 94 137 57 chrX 163340317 163340445 -13633695 + HSMAR2 DNA Mariner 76 230 -1072 1298 143 31 45 chrX 163340447 163340671 -13633469 + AluJb SINE Alu 86 306 -6 7848 109 7 0 chrX 163340671 163341739 -13632401 + HSMAR2 DNA Mariner 227 1301 -1 1999 155 0 3 chrX 163342471 163342755 -13631385 - AluJo SINE Alu -29 283 1 1082 172 30 5 chrX 163342943 163343146 -13630994 + LTR37A LTR ERV1 1 208 -218 497 279 27 0 chrX 163343167 163343314 -13630826 - MIR SINE MIR -72 190 40 370 231 116 54 chrX 163343996 163344238 -13629902 - L1MC5 LINE L1 -28 7933 7677 638 269 96 80 chrX 163344761 163345210 -13628930 + Charlie8 DNA MER1_type 36 491 -1926 22 0 0 0 chrX 163345233 163345255 -13628885 + AT_rich Low_complexity Low_complexity 1 22 0 1872 100 29 0 chrX 163345261 163345540 -13628600 - L1MA8 LINE L1 -3 6288 6002 587 282 107 30 chrX 163345598 163345896 -13628244 - LTR16C LTR ERVL -3 488 168 1718 183 26 54 chrX 163346942 163347165 -13626975 - MER58B DNA MER1_type -2080 340 129 2129 107 3 58 chrX 163347165 163347492 -13626648 + AluSx SINE Alu 1 309 -3 1718 183 26 54 chrX 163347492 163347618 -13626522 - MER58B DNA MER1_type -2291 129 1 25 0 0 0 chrX 163347842 163347867 -13626273 + AT_rich Low_complexity Low_complexity 1 25 0 345 185 0 0 chrX 163349753 163349807 -13624333 - Tigger7 DNA MER2_type -41 2450 2397 3074 134 41 21 chrX 163349812 163350098 -13624042 - Tigger7 DNA MER2_type -195 2292 1990 288 0 0 0 chrX 163350098 163350130 -13624010 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 3074 134 41 21 chrX 163350130 163350357 -13623783 - Tigger7 DNA MER2_type -497 1990 1769 1624 160 19 0 chrX 163350360 163350623 -13623517 - Tigger7 DNA MER2_type -1962 525 258 980 181 7 0 chrX 163350655 163350810 -13623330 - Tigger7 DNA MER2_type -577 156 1 3117 127 16 12 chrX 163352823 163353334 -13620806 + L1 LINE L1 4131 4643 -1503 728 315 56 29 chrX 163353334 163353712 -13620428 - LTR16B LTR ERVL -70 394 7 2383 88 0 25 chrX 163354736 163355053 -13619087 - AluSx SINE Alu -3 309 1 1246 199 75 33 chrX 163355119 163355677 -13618463 + MER92B LTR ERV1 1 621 -15 519 324 72 24 chrX 163355841 163356091 -13618049 - L1MC4a LINE L1 -1973 5835 5574 197 239 273 57 chrX 163356091 163356179 -13617961 + MER5A DNA MER1_type 77 183 -6 710 196 0 95 chrX 163356192 163356360 -13617780 + MER5B DNA MER1_type 1 152 -26 186 419 43 0 chrX 163356606 163356699 -13617441 - L2 LINE L2 -26 3246 3150 4332 83 14 3 chrX 163357262 163357852 -13616288 - L1PB1 LINE L1 -32 6119 5524 199 71 0 0 chrX 163357962 163357990 -13616150 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1869 123 0 74 chrX 163357990 163358301 -13615839 - AluSx SINE Alu -1 315 1 652 147 62 70 chrX 163359113 163359242 -13614898 - FLAM_A SINE Alu -4 129 2 23 68 0 0 chrX 163359595 163359639 -13614501 + AT_rich Low_complexity Low_complexity 1 44 0 190 292 45 34 chrX 163360142 163360231 -13613909 - MER5A DNA MER1_type -22 167 78 1785 157 0 26 chrX 163360532 163360837 -13613303 + AluJo SINE Alu 1 297 -15 1696 165 3 30 chrX 163361214 163361517 -13612623 - AluJb SINE Alu -17 295 1 1174 245 14 7 chrX 163361521 163361803 -13612337 - L1MCb LINE L1 -4948 1097 814 1456 116 5 5 chrX 163363147 163363354 -13610786 + MER3 DNA MER1_type 1 207 -2 532 324 71 63 chrX 163364126 163364493 -13609647 - L2 LINE L2 -4 3268 2899 267 200 36 0 chrX 163364592 163364647 -13609493 - L1ME4a LINE L1 -94 6027 5971 387 0 0 0 chrX 163364721 163364764 -13609376 + (TG)n Simple_repeat Simple_repeat 2 44 0 459 280 0 2 chrX 163365119 163365266 -13608874 + MER5A DNA MER1_type 9 189 0 442 213 55 55 chrX 163365649 163365776 -13608364 + MIR SINE MIR 82 208 -54 1022 211 148 78 chrX 163365795 163366208 -13607932 + MLT1J1 LTR MaLR 1 442 -4 928 183 24 0 chrX 163366350 163366514 -13607626 - MER58A DNA MER1_type 0 168 1 1587 238 24 32 chrX 163366812 163367385 -13606755 + MLT2E LTR ERVL 6 620 -8 2511 148 45 30 chrX 163367416 163367842 -13606298 + MSTB1 LTR MaLR 1 432 0 246 154 0 0 chrX 163368618 163368657 -13605483 - MLT2E LTR ERVL -580 48 10 1682 184 28 0 chrX 163369227 163369547 -13604593 + L1MB7 LINE L1 5847 6175 -9 1967 146 17 7 chrX 163369561 163369863 -13604277 + AluSx SINE Alu 1 305 -7 1483 215 112 33 chrX 163370107 163370474 -13603666 + MSTD LTR MaLR 1 396 0 13355 31 0 2 chrX 163370660 163372940 -13601200 + L1PA4 LINE L1 3867 6152 -3 1650 184 18 0 chrX 163373458 163373765 -13600375 - AluJb SINE Alu 0 312 1 1994 226 106 2 chrX 163373971 163374441 -13599699 - LTR40a LTR ERVL 0 519 1 734 269 60 30 chrX 163374442 163374710 -13599430 + L2 LINE L2 3029 3304 -9 471 197 73 14 chrX 163375423 163375579 -13598561 + LTR50 LTR ERVL 1 210 -585 931 195 158 7 chrX 163375686 163375958 -13598182 + LTR50 LTR ERVL 479 791 -4 539 267 92 25 chrX 163376621 163376861 -13597279 + L1MC5 LINE L1 7246 7501 -460 2532 64 0 3 chrX 163376865 163377177 -13596963 - AluY SINE Alu 0 311 1 492 248 64 14 chrX 163377275 163377416 -13596724 + L1ME3A LINE L1 5962 6109 -61 1244 172 74 39 chrX 163377470 163377515 -13596625 + MER90 LTR ERV1 1 43 -571 1765 98 27 0 chrX 163377515 163377739 -13596401 + MER30 DNA MER1_type 1 230 0 1244 172 74 39 chrX 163377739 163377949 -13596191 + MER90 LTR ERV1 43 265 -349 1408 194 0 4 chrX 163377951 163378199 -13595941 + MER90 LTR ERV1 368 614 0 435 231 89 35 chrX 163378861 163379030 -13595110 - MARNA DNA Mariner -202 384 207 339 295 21 0 chrX 163379349 163379444 -13594696 + MIR3 SINE MIR 90 186 -22 771 229 40 10 chrX 163379593 163379794 -13594346 - MER20B DNA MER1_type -31 752 546 480 216 105 39 chrX 163379832 163379985 -13594155 + MER103 DNA DNA 2 164 -2 795 137 7 43 chrX 163380161 163380300 -13593840 - MER20B DNA MER1_type -84 135 2 1190 203 14 5 chrX 163382332 163382554 -13591586 - MER58A DNA MER1_type 0 224 1 183 374 11 0 chrX 163384660 163384751 -13589389 + L2 LINE L2 2067 2158 -1156 186 361 0 0 chrX 163384778 163384861 -13589279 + L2 LINE L2 2702 2784 -530 310 245 34 75 chrX 163384981 163385128 -13589012 + L1MC4a LINE L1 5613 5753 -2055 7235 91 11 14 chrX 163385129 163385840 -13588300 + L1MA2 LINE L1 5269 5978 -326 2071 89 67 7 chrX 163385840 163386122 -13588018 + AluSp SINE Alu 1 299 -14 7235 91 11 14 chrX 163386122 163386449 -13587691 + L1MA2 LINE L1 5978 6304 0 454 227 67 0 chrX 163386454 163386573 -13587567 + L1MC4a LINE L1 5740 5866 -1942 1260 267 39 18 chrX 163386581 163386970 -13587170 + LTR16A LTR ERVL 25 421 -29 1789 163 29 0 chrX 163387503 163387780 -13586360 + AluJb SINE Alu 1 285 -27 346 49 0 0 chrX 163387883 163387924 -13586216 - AluY SINE Alu -252 51 11 215 302 16 0 chrX 163388133 163388196 -13585944 - MIR3 SINE MIR -19 189 126 705 323 135 38 chrX 163388343 163389387 -13584753 - L2 LINE L2 -759 2555 1332 858 310 0 9 chrX 163389387 163389613 -13584527 - MER58A DNA MER1_type 0 224 1 705 323 135 38 chrX 163389613 163390001 -13584139 - L2 LINE L2 -1982 1332 983 2328 72 7 0 chrX 163390278 163390569 -13583571 - AluY SINE Alu -18 293 1 286 231 62 0 chrX 163390662 163390727 -13583413 + L2 LINE L2 3245 3313 0 791 172 14 0 chrX 163392694 163392839 -13581301 - L1MA9 LINE L1 -7 6305 6159 661 225 6 6 chrX 163392846 163393024 -13581116 + CT-rich Low_complexity Low_complexity 3 180 0 1114 161 40 22 chrX 163393028 163393275 -13580865 - L1MA9 LINE L1 -4 6185 5926 231 36 0 0 chrX 163394002 163394030 -13580110 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 1999 88 0 8 chrX 163394057 163394319 -13579821 - AluSq SINE Alu -53 260 1 1879 146 0 41 chrX 163397459 163397836 -13576304 + AluJo SINE Alu 11 374 0 2292 152 86 8 chrX 163397927 163398322 -13575818 - MSTB LTR MaLR 0 426 1 681 168 0 0 chrX 163398349 163398456 -13575684 - MER20B DNA MER1_type -20 199 93 360 214 0 0 chrX 163398452 163398536 -13575604 - MER53 DNA DNA -50 139 56 * 22 0 0 0 chrX 163398721 163398743 -13575397 + AT_rich Low_complexity Low_complexity 1 22 0 1211 54 0 0 chrX 163399425 163399572 -13574568 - AluY SINE Alu -19 292 146 2264 112 0 3 chrX 163399693 163399997 -13574143 + AluSx SINE Alu 1 303 -9 243 57 0 57 chrX 163400005 163400058 -13574082 + (TAA)n Simple_repeat Simple_repeat 3 52 0 906 187 16 50 chrX 163400442 163400624 -13573516 - MER45A DNA AcHobo -1 177 2 2231 216 58 99 chrX 163400626 163401350 -13572790 - LTR8A LTR ERV1 0 727 34 2373 106 3 0 chrX 163401803 163402114 -13572026 - AluSx SINE Alu 0 312 1 711 276 0 73 chrX 163402218 163402450 -13571690 - MIR SINE MIR -5 257 43 7332 114 15 11 chrX 163402450 163403893 -13570247 + L1MA2 LINE L1 4852 6300 -4 24 0 0 0 chrX 163403893 163403917 -13570223 + AT_rich Low_complexity Low_complexity 1 24 0 2730 157 40 56 chrX 163403926 163404650 -13569490 - MER4-int LTR ERV1 -2512 4086 2349 3870 93 65 17 chrX 163404665 163404741 -13569399 - MER4-int LTR ERV1 -6253 1867 1796 2073 82 45 0 chrX 163404741 163405010 -13569130 - AluSg SINE Alu -13 297 17 3870 93 65 17 chrX 163405010 163405569 -13568571 - MER4-int LTR ERV1 -6324 1796 1202 379 228 269 13 chrX 163405609 163405758 -13568382 - L1MC4a LINE L1 -1907 5901 5715 515 350 94 31 chrX 163405783 163406368 -13567772 - L2 LINE L2 -1976 1338 717 2387 244 19 16 chrX 163407546 163408062 -13566078 + LTR40a LTR ERVL 1 518 -1 342 300 138 6 chrX 163408299 163408459 -13565681 + MIR SINE MIR 3 183 -79 1281 181 14 18 chrX 163408470 163408691 -13565449 - MER58A DNA MER1_type 0 224 5 3295 149 24 20 chrX 163408768 163409318 -13564822 - L1PB4 LINE L1 -2 6154 5603 388 312 135 0 chrX 163409368 163409538 -13564602 - MIR SINE MIR -64 198 6 292 294 82 14 chrX 163410062 163410208 -13563932 + L1ME4a LINE L1 5964 6119 -2 289 210 219 8 chrX 163410343 163410462 -13563678 + L1ME4a LINE L1 5966 6109 -12 25 0 0 0 chrX 163410463 163410488 -13563652 + AT_rich Low_complexity Low_complexity 1 25 0 186 255 0 0 chrX 163410672 163410723 -13563417 + (TG)n Simple_repeat Simple_repeat 1 51 0 1714 149 73 0 chrX 163410953 163411228 -13562912 - AluJb SINE Alu -17 295 1 1054 206 10 5 chrX 163411809 163412013 -13562127 - MER20 DNA MER1_type -13 206 2 1202 136 23 50 chrX 163412083 163412303 -13561837 - MER20 DNA MER1_type 0 219 6 1326 159 23 5 chrX 163412496 163412710 -13561430 + MER20 DNA MER1_type 2 219 0 329 142 8 213 chrX 163413280 163413407 -13560733 + MER5B DNA MER1_type 1 101 -77 2165 104 3 7 chrX 163413768 163414067 -13560073 + AluSx SINE Alu 1 298 -14 26 64 0 0 chrX 163414375 163414422 -13559718 + AT_rich Low_complexity Low_complexity 1 47 0 834 164 14 7 chrX 163414470 163414610 -13559530 + MLT1J2 LTR MaLR 2 142 -308 1929 150 0 13 chrX 163414900 163415206 -13558934 + AluJo SINE Alu 1 302 -10 294 243 45 54 chrX 163415219 163415330 -13558810 - L2 LINE L2 -828 2486 2377 2141 245 82 14 chrX 163415435 163416106 -13558034 - L1MC4 LINE L1 -560 7482 5214 21 0 0 0 chrX 163416188 163416209 -13557931 + AT_rich Low_complexity Low_complexity 1 21 0 447 269 83 52 chrX 163416540 163416733 -13557407 + MIR SINE MIR 64 262 0 859 207 77 67 chrX 163417185 163417470 -13556670 - LTR8A LTR ERV1 -64 663 376 417 174 0 23 chrX 163418279 163418365 -13555775 - AluS SINE Alu -1 308 225 2255 104 0 0 chrX 163418465 163418762 -13555378 - AluSg SINE Alu -12 298 2 1676 61 0 0 chrX 163420014 163420210 -13553930 + AluY SINE Alu 99 294 -17 743 300 69 13 chrX 163421631 163421864 -13552276 - MIR SINE MIR -10 252 7 940 228 84 8 chrX 163422737 163422974 -13551166 - LTR16C LTR ERVL 0 491 237 294 173 19 0 chrX 163423057 163423109 -13551031 - LTR16C LTR ERVL -381 110 58 204 40 0 0 chrX 163424056 163424081 -13550059 + (A)n Simple_repeat Simple_repeat 1 25 0 424 226 18 98 chrX 163424551 163424594 -13549546 + L1ME3 LINE L1 6012 6057 -105 995 187 64 46 chrX 163424594 163424813 -13549327 - MER58A DNA MER1_type -1 223 1 424 226 18 98 chrX 163424813 163424933 -13549207 + L1ME3 LINE L1 6057 6162 0 1369 148 12 23 chrX 163425228 163425470 -13548670 - L1MA4 LINE L1 -9 6291 6051 2117 133 0 22 chrX 163425470 163425787 -13548353 - AluSx SINE Alu -2 310 1 1369 148 12 23 chrX 163425787 163425801 -13548339 - L1MA4 LINE L1 -249 6051 6038 2077 61 8 0 chrX 163425815 163426079 -13548061 - L1P3 LINE L1 -558 5596 5331 4319 62 0 0 chrX 163426079 163426582 -13547558 + L1PA7 LINE L1 5642 6154 0 842 158 10 19 chrX 163426585 163426767 -13547373 - L1MA4 LINE L1 -267 6033 5849 242 256 11 89 chrX 163426770 163426860 -13547280 - MLT1J LTR MaLR -420 91 9 279 258 151 0 chrX 163427397 163427490 -13546650 + MIR SINE MIR 33 139 -69 276 310 92 87 chrX 163427620 163428023 -13546117 + L2 LINE L2 2857 3261 -11 272 263 119 17 chrX 163428207 163428325 -13545815 - L2 LINE L2 -4 3268 3139 2242 123 0 0 chrX 163429768 163430070 -13544070 + AluSx SINE Alu 1 302 -10 22 35 0 0 chrX 163431120 163431149 -13542991 + AT_rich Low_complexity Low_complexity 1 29 0 316 376 61 15 chrX 163431497 163431760 -13542380 - L3 LINE CR1 -620 957 683 369 267 11 11 chrX 163432565 163432655 -13541485 + L2 LINE L2 3181 3270 -2 5115 167 27 5 chrX 163433851 163434869 -13539271 - L1MB5 LINE L1 -1 6173 5137 1370 286 126 31 chrX 163435185 163436069 -13538071 + L2 LINE L2 2225 3181 -132 605 113 0 0 chrX 163436069 163436149 -13537991 + MADE1 DNA Mariner 1 80 0 1370 286 126 31 chrX 163436149 163436160 -13537980 + L2 LINE L2 3181 3190 -123 369 0 0 0 chrX 163436160 163436201 -13537939 + (CA)n Simple_repeat Simple_repeat 2 42 0 257 316 44 29 chrX 163436809 163436945 -13537195 - MIR3 SINE MIR -6 202 65 402 301 7 37 chrX 163436953 163437089 -13537051 - MIR3 SINE MIR -76 132 1 2162 131 0 0 chrX 163437106 163437403 -13536737 - AluSx SINE Alu -14 298 2 984 161 89 0 chrX 163437646 163437814 -13536326 + MER5A DNA MER1_type 1 183 -6 1161 381 87 16 chrX 163437823 163438248 -13535892 + LTR16A1 LTR ERVL 3 457 0 2000 150 3 7 chrX 163439174 163439481 -13534659 + AluSx SINE Alu 5 310 -2 234 326 32 0 chrX 163439549 163439644 -13534496 - L3b LINE CR1 -185 1398 1301 248 143 0 24 chrX 163441279 163441321 -13532819 - THE1C LTR MaLR 0 428 388 2271 110 0 16 chrX 163441321 163441631 -13532509 + AluSx SINE Alu 1 305 -7 1042 116 152 54 chrX 163441640 163441864 -13532276 - THE1C LTR MaLR -129 246 1 805 299 175 18 chrX 163442047 163442448 -13531692 + HAL1 LINE L1 210 673 -1834 1125 246 101 26 chrX 163442549 163443006 -13531134 - MLT1H LTR MaLR -13 536 1 1914 199 89 60 chrX 163443912 163444429 -13529711 - MLT1F LTR MaLR 0 542 11 1077 216 68 15 chrX 163444862 163445126 -13529014 + MER46C DNA MER2_type 2 279 -59 268 254 0 0 chrX 163445315 163445370 -13528770 - MER46C DNA MER2_type 0 338 284 560 271 21 0 chrX 163445417 163445561 -13528579 + MIR SINE MIR 51 197 -65 428 181 0 11 chrX 163446197 163446291 -13527849 + CT-rich Low_complexity Low_complexity 3 95 0 508 213 40 87 chrX 163446878 163447028 -13527112 + MIR SINE MIR 2 144 -118 308 163 0 93 chrX 163447036 163447122 -13527018 - HsTC2 DNA Tc2 -2 1896 1819 1051 282 69 28 chrX 163447538 163448134 -13526006 + L2 LINE L2 2683 3313 0 1165 164 83 83 chrX 163448183 163448507 -13525633 + MER33 DNA MER1_type 1 324 0 299 261 0 15 chrX 163448614 163448679 -13525461 - L2 LINE L2 -38 3275 3212 1807 135 0 77 chrX 163448914 163449241 -13524899 - AluJb SINE Alu -10 302 1 2787 13 3 6 chrX 163449252 163449564 -13524576 - AluYa5 SINE Alu 0 311 1 682 278 92 49 chrX 163449729 163450320 -13523820 - L2 LINE L2 -38 3275 2531 24 0 0 0 chrX 163450865 163450889 -13523251 + AT_rich Low_complexity Low_complexity 1 24 0 401 178 0 11 chrX 163450948 163451038 -13523102 + GA-rich Low_complexity Low_complexity 1 89 0 1175 159 85 0 chrX 163451801 163452002 -13522138 - MER20 DNA MER1_type -1 218 1 22 0 0 0 chrX 163452857 163452879 -13521261 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chrX 163452914 163452944 -13521196 + AT_rich Low_complexity Low_complexity 1 30 0 728 104 37 20 chrX 163452944 163453188 -13520952 + (TA)n Simple_repeat Simple_repeat 1 248 0 1815 147 33 0 chrX 163453953 163454264 -13519876 - AluSx SINE Alu 0 320 1 532 338 148 3 chrX 163454417 163454748 -13519392 + MLT1K LTR MaLR 69 447 -141 2245 106 3 3 chrX 163454860 163455161 -13518979 - AluSx SINE Alu -11 301 1 3273 101 11 15 chrX 163455609 163456011 -13518129 + L1PA16 LINE L1 5705 6106 -60 2399 117 141 5 chrX 163456011 163456388 -13517752 - MSTA LTR MaLR 0 428 1 3273 101 11 15 chrX 163456388 163456440 -13517700 + L1PA16 LINE L1 6106 6157 -9 371 102 0 0 chrX 163456468 163456517 -13517623 + MER5A DNA MER1_type 2 50 -139 332 266 13 13 chrX 163456531 163456610 -13517530 + MER21B LTR ERV1 12 90 -773 4249 171 31 36 chrX 163456632 163457472 -13516668 + MER21B LTR ERV1 19 854 -9 779 170 20 14 chrX 163457476 163457623 -13516517 + MER5A DNA MER1_type 35 182 -7 546 175 26 44 chrX 163457655 163457769 -13516371 - MER58A DNA MER1_type 0 112 1 767 251 27 0 chrX 163457777 163457960 -13516180 + MER5A DNA MER1_type 1 188 -1 261 192 417 0 chrX 163457968 163458088 -13516052 + MER5B DNA MER1_type 2 171 -7 316 177 35 133 chrX 163458400 163458464 -13515676 - MER21B LTR ERV1 -30 833 783 243 0 0 0 chrX 163458464 163458491 -13515649 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 316 177 35 133 chrX 163458491 163458539 -13515601 - MER21B LTR ERV1 -80 783 732 599 168 30 0 chrX 163458861 163458962 -13515178 + MER5A DNA MER1_type 9 112 -77 1951 141 0 10 chrX 163459236 163459533 -13514607 + AluJb SINE Alu 1 294 -18 1589 132 0 0 chrX 163459948 163460203 -13513937 + AluSg/x SINE Alu 72 326 0 591 288 112 0 chrX 163460228 163460443 -13513697 - MIR SINE MIR -21 241 3 830 204 0 13 chrX 163460715 163460867 -13513273 + FRAM SINE Alu 20 169 -7 2802 196 95 29 chrX 163461050 163461606 -13512534 + MLT1E LTR MaLR 1 593 0 2237 129 0 0 chrX 163462701 163463003 -13511137 - AluJb SINE Alu -10 302 1 302 234 9 0 chrX 163463175 163463282 -13510858 + (TG)n Simple_repeat Simple_repeat 2 109 0 2448 139 127 5 chrX 163463701 163464141 -13509999 + LTR54B LTR ERV1 3 496 -2 2445 94 106 3 chrX 163464766 163465106 -13509034 + THE1C LTR MaLR 1 375 0 2001 153 78 26 chrX 163465503 163465850 -13508290 + MLT1A1 LTR MaLR 1 365 0 230 271 135 90 chrX 163466511 163466644 -13507496 + L2 LINE L2 3134 3272 0 225 316 103 26 chrX 163467081 163467198 -13506942 - L2 LINE L2 -6 3307 3182 261 0 0 0 chrX 163467213 163467242 -13506898 + (CA)n Simple_repeat Simple_repeat 2 30 0 405 0 0 0 chrX 163467700 163467745 -13506395 + (TG)n Simple_repeat Simple_repeat 2 46 0 847 204 41 48 chrX 163468167 163468436 -13505704 - LTR37B LTR ERV1 -5 463 197 1133 232 119 3 chrX 163468496 163468849 -13505291 - LTR37A LTR ERV1 0 426 33 513 244 31 25 chrX 163468903 163469063 -13505077 - LTR37B LTR ERV1 -307 161 1 2467 182 7 9 chrX 163469378 163469823 -13504317 - L1PB4 LINE L1 -1 6155 5712 1068 250 60 0 chrX 163471081 163471365 -13502775 - MER46C DNA MER2_type -21 317 17 230 173 58 0 chrX 163471564 163471616 -13502524 - Charlie8 DNA MER1_type -992 1425 1371 * 403 222 43 8 chrX 163471614 163471731 -13502409 - Charlie8 DNA MER1_type -2212 205 85 2210 92 7 16 chrX 163472713 163473017 -13501123 + AluSq SINE Alu 1 301 -12 2696 141 5 18 chrX 163473086 163473484 -13500656 + MSTD LTR MaLR 1 393 -3 716 228 28 79 chrX 163473529 163473744 -13500396 + MER63A DNA MER1_type 2 205 -5 195 146 18 91 chrX 163473790 163473845 -13500295 + MIR SINE MIR 121 171 -91 21 36 0 0 chrX 163473898 163473926 -13500214 + AT_rich Low_complexity Low_complexity 1 28 0 697 97 32 78 chrX 163474375 163474415 -13499725 - Charlie5 DNA MER1_type -1 2584 2544 2026 106 39 0 chrX 163474415 163474699 -13499441 - AluSx SINE Alu -17 295 1 697 97 32 78 chrX 163474699 163474812 -13499328 - Charlie5 DNA MER1_type -41 2544 2438 248 77 77 0 chrX 163474812 163474851 -13499289 - Charlie5 DNA MER1_type -107 2505 2464 * 967 216 33 14 chrX 163474846 163474910 -13499230 + LTR8A LTR ERV1 508 569 -158 1661 60 0 0 chrX 163474910 163475111 -13499029 + AluY SINE Alu 111 311 0 967 216 33 14 chrX 163475111 163475259 -13498881 + LTR8A LTR ERV1 569 724 -3 624 205 18 0 chrX 163475457 163475569 -13498571 + MER81 DNA DNA 1 114 0 425 213 44 88 chrX 163475680 163475840 -13498300 + MIR SINE MIR 108 260 -2 241 224 90 15 chrX 163476347 163476414 -13497726 + LTR67 LTR ERVL 97 168 -389 * 650 223 68 86 chrX 163476388 163476743 -13497397 + MLT1L LTR MaLR 202 615 0 568 222 217 35 chrX 163476878 163477081 -13497059 + MIR SINE MIR 1 240 -22 223 284 40 14 chrX 163477263 163477337 -13496803 + MIR SINE MIR 64 139 -123 1559 163 9 92 chrX 163477344 163477681 -13496459 + AluJb SINE Alu 1 309 -3 995 252 103 53 chrX 163477691 163478127 -13496013 - LTR16C LTR ERVL 0 491 34 221 353 41 25 chrX 163478204 163478326 -13495814 - L2 LINE L2 -32 3240 3117 1035 224 144 32 chrX 163478396 163478749 -13495391 + L1MC4a LINE L1 5497 5772 -349 2093 207 26 46 chrX 163478757 163479299 -13494841 - LTR55 LTR ERV -17 531 1 327 307 162 4 chrX 163479299 163479540 -13494600 + L1MC4a LINE L1 5900 6178 -1630 227 217 72 60 chrX 163479652 163479735 -13494405 + L2 LINE L2 3230 3313 0 1901 159 13 19 chrX 163479762 163480076 -13494064 - AluJo SINE Alu 0 312 1 193 220 40 0 chrX 163480344 163480394 -13493746 - L2 LINE L2 0 3313 3262 869 152 13 0 chrX 163480730 163480881 -13493259 + L1M4 LINE L1 5356 5508 -676 208 319 121 32 chrX 163481084 163481241 -13492899 + L2 LINE L2 2636 2806 -508 988 216 4 45 chrX 163481287 163481556 -13492584 - L1MB8 LINE L1 -5 6173 5915 3802 98 69 4 chrX 163483075 163483595 -13490545 + MER41A LTR ERV1 1 554 0 307 311 38 15 chrX 163483728 163483860 -13490280 - MIR SINE MIR -64 198 64 1563 177 92 16 chrX 163483867 163484184 -13489956 + MER58B DNA MER1_type 1 341 0 2225 81 0 7 chrX 163484549 163484864 -13489276 - AluSg1 SINE Alu 0 313 1 3794 193 40 46 chrX 163485315 163485569 -13488571 - L1ME2 LINE L1 -9 6155 5901 4130 120 38 65 chrX 163485569 163486279 -13487861 - LTR8 LTR ERV1 0 691 1 3794 193 40 46 chrX 163486279 163486922 -13487218 - L1ME2 LINE L1 -263 5901 5279 2307 72 7 14 chrX 163486922 163487214 -13486926 - AluSq SINE Alu -23 290 1 3794 193 40 46 chrX 163487214 163487591 -13486549 - L1ME2 LINE L1 -885 5279 4901 254 312 26 0 chrX 163487596 163487673 -13486467 - MIR SINE MIR -105 157 79 7259 51 4 23 chrX 163488424 163489345 -13484795 - L1PA8 LINE L1 0 6172 5269 * 19684 135 89 78 chrX 163489333 163493569 -13480571 - L1P LINE L1 -1863 4283 1 1621 199 16 6 chrX 163493786 163494098 -13480042 - MER61A LTR ERV1 -28 315 1 1525 149 3 63 chrX 163494469 163494770 -13479370 - MER33 DNA MER1_type -22 302 20 2250 118 0 0 chrX 163494978 163495275 -13478865 - AluSx SINE Alu -15 297 1 904 146 0 0 chrX 163496849 163496986 -13477154 + FLAM_C SINE Alu 1 137 -6 1151 246 79 35 chrX 163497663 163498057 -13476083 + MLT1J LTR MaLR 3 413 -98 2251 98 0 23 chrX 163498060 163498367 -13475773 - AluSx SINE Alu -12 300 1 260 294 60 72 chrX 163500691 163500926 -13473214 + L2 LINE L2 463 694 -2620 2129 111 12 55 chrX 163500959 163501088 -13473052 + MER51B LTR ERV1 1 134 -243 2901 85 3 0 chrX 163501088 163501442 -13472698 + THE1A LTR MaLR 1 355 0 2129 111 12 55 chrX 163501442 163501764 -13472376 + MER51B LTR ERV1 134 377 0 506 265 48 63 chrX 163501841 163502030 -13472110 + L2 LINE L2 3128 3313 0 318 162 270 0 chrX 163502414 163502488 -13471652 + MLT1F LTR MaLR 239 332 -210 1132 176 0 6 chrX 163502528 163502710 -13471430 + MER74B LTR ERVL 81 261 -361 616 188 94 0 chrX 163502705 163502833 -13471307 + MER74A LTR ERVL 419 558 0 * 736 292 59 33 chrX 163503220 163503561 -13470579 - L1MC4 LINE L1 -5 7990 7583 202 284 95 27 chrX 163553734 163553808 -13420332 + MER5A DNA MER1_type 111 189 0 303 325 127 33 chrX 163553871 163554203 -13419937 + L3b LINE CR1 1107 1469 -114 277 240 27 0 chrX 163554679 163554754 -13419386 + MER103 DNA DNA 8 84 -82 195 42 0 0 chrX 163555469 163555493 -13418647 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 469 183 9 9 chrX 163556519 163556634 -13417506 + GA-rich Low_complexity Low_complexity 2 116 0 948 201 17 0 chrX 163559751 163559925 -13414215 - MER58A DNA MER1_type -3 221 45 943 172 18 0 chrX 163559945 163560114 -13414026 + MER5B DNA MER1_type 1 172 -6 1077 155 0 11 chrX 163560387 163560568 -13413572 + FRAM SINE Alu 1 176 0 296 238 74 16 chrX 163562256 163562378 -13411762 - L1ME4a LINE L1 -4 6117 5989 1753 234 44 53 chrX 163562539 163562798 -13411342 - L1ME1 LINE L1 -6 6160 5900 2176 121 3 0 chrX 163562798 163563095 -13411045 + AluSx SINE Alu 1 298 -14 1753 234 44 53 chrX 163563095 163563413 -13410727 - L1ME1 LINE L1 -266 5900 5604 353 158 79 0 chrX 163563382 163563458 -13410682 - L1ME4a LINE L1 -303 5818 5737 * 632 307 95 43 chrX 163563466 163563834 -13410306 - LTR16C LTR ERVL -8 483 97 441 341 41 16 chrX 163563964 163564014 -13410126 - L1ME4a LINE L1 -391 5730 5683 1739 165 3 34 chrX 163564014 163564336 -13409804 - AluJb SINE Alu 0 312 1 441 341 41 16 chrX 163564336 163564531 -13409609 - L1ME4a LINE L1 -438 5683 5479 328 263 8 25 chrX 163566089 163566207 -13407933 + L1MEd LINE L1 60 175 -5944 * 331 257 136 38 chrX 163566182 163566424 -13407716 + L1MC/D LINE L1 5274 5526 -732 289 223 245 0 chrX 163566791 163566885 -13407255 - MER5C DNA MER1_type -200 124 8 2379 86 6 13 chrX 163568379 163568693 -13405447 + AluSx SINE Alu 1 312 0 709 177 0 26 chrX 163568693 163568806 -13405334 - FAM SINE Alu -28 157 48 2461 74 3 0 chrX 163569155 163569454 -13404686 + AluSp SINE Alu 1 300 -13 1374 277 137 19 chrX 163569507 163570790 -13403350 + L1MC/D LINE L1 4357 5829 -333 1854 157 0 10 chrX 163571127 163571426 -13402714 - AluJb SINE Alu -16 296 1 2043 128 14 0 chrX 163572541 163572837 -13401303 - AluSx SINE Alu -12 300 1 292 177 0 32 chrX 163573099 163573161 -13400979 + L1MC4 LINE L1 6650 6709 -1333 983 295 68 3 chrX 163573402 163573724 -13400416 - MLT1I LTR MaLR -7 402 60 1719 132 48 11 chrX 163573845 163574147 -13399993 + AluJo SINE Alu 5 316 0 379 241 128 23 chrX 163574396 163574529 -13399611 - MER103 DNA DNA -18 148 2 281 290 65 0 chrX 163574642 163574749 -13399391 + MIR SINE MIR 30 143 -65 2445 69 3 0 chrX 163576068 163576371 -13397769 + AluY SINE Alu 1 304 -7 961 237 47 13 chrX 163576786 163577018 -13397122 + MIR SINE MIR 2 241 -21 217 281 0 16 chrX 163577038 163577102 -13397038 + L2 LINE L2 2924 2986 -286 423 140 168 47 chrX 163577121 163577159 -13396981 - L1MA10 LINE L1 -2 6332 6295 1523 198 86 24 chrX 163577159 163577533 -13396607 - L1ME1 LINE L1 -46 6120 5724 321 284 0 25 chrX 163577534 163577615 -13396525 + L2 LINE L2 3235 3313 0 247 265 0 71 chrX 163577671 163577769 -13396371 + L1ME LINE L1 5797 5887 -234 1862 150 0 33 chrX 163577948 163578255 -13395885 + AluJb SINE Alu 1 297 -15 317 269 168 27 chrX 163578759 163578908 -13395232 + MIR SINE MIR 23 192 -70 1248 273 11 67 chrX 163578916 163579346 -13394794 + LTR16B LTR ERVL 1 403 -61 2051 138 0 25 chrX 163579346 163579664 -13394476 - AluJo SINE Alu -2 310 1 1248 273 11 67 chrX 163579664 163579709 -13394431 + LTR16B LTR ERVL 403 449 -15 223 290 16 0 chrX 163579719 163579781 -13394359 + L2 LINE L2 3198 3260 -12 1119 182 57 0 chrX 163579884 163580093 -13394047 - L1MB4 LINE L1 -6 6174 5954 1922 193 62 7 chrX 163580677 163581082 -13393058 - L1MB4 LINE L1 -938 5208 4782 1084 124 94 113 chrX 163581083 163581227 -13392913 + L1MA9 LINE L1 5658 5796 -516 2181 127 0 0 chrX 163581227 163581519 -13392621 + AluSx SINE Alu 1 292 -20 1084 124 94 113 chrX 163581519 163581639 -13392501 + L1MA9 LINE L1 5796 5917 -395 273 184 0 0 chrX 163581673 163581722 -13392418 + L1PB3 LINE L1 4955 5003 -1143 685 184 0 0 chrX 163581730 163581839 -13392301 + FLAM_C SINE Alu 3 111 -32 650 137 29 0 chrX 163581839 163581941 -13392199 + L1PB3 LINE L1 5450 5554 -600 415 170 32 0 chrX 163581941 163582035 -13392105 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 2187 114 10 3 chrX 163582036 163582344 -13391796 + L1PB3 LINE L1 5845 6154 0 1879 145 81 103 chrX 163582351 163582910 -13391230 + LTR49 LTR ERV1 29 600 -22 1858 114 59 114 chrX 163582933 163583214 -13390926 + L1MA9 LINE L1 5915 6167 -145 300 53 0 0 chrX 163583214 163583252 -13390888 + (CA)n Simple_repeat Simple_repeat 1 38 0 1858 114 59 114 chrX 163583252 163583391 -13390749 + L1MA9 LINE L1 6167 6312 0 1019 135 57 105 chrX 163583664 163583893 -13390247 - MER20 DNA MER1_type -1 218 1 2189 78 4 11 chrX 163584280 163584561 -13389579 + AluSx SINE Alu 1 279 -33 225 0 0 0 chrX 163584561 163584586 -13389554 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1895 140 50 3 chrX 163585400 163585721 -13388419 + MER61A LTR ERV1 1 336 -7 259 368 0 23 chrX 163585878 163585965 -13388175 - MER91A DNA MER1_type -88 108 24 192 354 163 6 chrX 163586536 163586714 -13387426 + L2 LINE L2 2708 2913 -401 21 71 0 0 chrX 163586868 163586910 -13387230 + AT_rich Low_complexity Low_complexity 1 42 0 465 263 59 0 chrX 163587003 163587121 -13387019 + MER94 DNA DNA 2 126 -8 300 291 94 17 chrX 163587137 163587254 -13386886 + L2 LINE L2 3188 3313 0 190 103 103 26 chrX 163587892 163587931 -13386209 - L2 LINE L2 0 3313 3272 1494 70 5 0 chrX 163588470 163588655 -13385485 + AluY SINE Alu 1 186 -125 967 180 0 12 chrX 163589827 163589988 -13384152 - AluJb SINE Alu -18 294 136 1992 136 17 0 chrX 163590671 163590966 -13383174 + AluSx SINE Alu 1 300 -12 322 93 74 0 chrX 163593529 163593583 -13380557 - L1P4 LINE L1 -705 5463 5406 4909 44 0 5 chrX 163593583 163594135 -13380005 + L1PA7 LINE L1 5586 6148 -6 180 0 0 0 chrX 163594159 163594179 -13379961 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 198 0 0 0 chrX 163594178 163594200 -13379940 + (GA)n Simple_repeat Simple_repeat 2 23 0 2342 81 7 0 chrX 163594239 163594535 -13379605 - AluY SINE Alu -13 298 1 1807 129 4 0 chrX 163607558 163607822 -13366318 - AluSx SINE Alu -42 270 6 189 340 0 0 chrX 163610089 163610142 -13363998 + L2 LINE L2 2566 2618 -696 257 75 25 0 chrX 163615744 163615784 -13358356 + (CA)n Simple_repeat Simple_repeat 2 42 0 2172 169 57 21 chrX 163616995 163617414 -13356726 + Tigger2a DNA MER2_type 1 434 0 24 32 0 0 chrX 163617450 163617481 -13356659 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chrX 163617854 163617889 -13356251 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 835 70 0 9 chrX 163618007 163618121 -13356019 + L1PB1 LINE L1 6039 6151 0 317 260 123 13 chrX 163618235 163618389 -13355751 + L1ME4a LINE L1 5932 6102 -19 1129 178 9 61 chrX 163618991 163619222 -13354918 - MER20 DNA MER1_type 0 219 1 1445 236 79 16 chrX 163619918 163620346 -13353794 + L1MCa LINE L1 36 490 -5936 2289 233 40 34 chrX 163620398 163621105 -13353035 + L1MCb LINE L1 385 1095 -4950 1942 163 3 3 chrX 163621124 163621425 -13352715 + AluJb SINE Alu 1 301 -11 1272 270 89 62 chrX 163621428 163622105 -13352035 + MER21B LTR ERV1 20 714 -149 2743 85 3 11 chrX 163622137 163622503 -13351637 + THE1B LTR MaLR 1 363 -1 4341 192 48 26 chrX 163622506 163625140 -13349000 + L1MCb LINE L1 1092 3867 -2697 2817 129 11 25 chrX 163625146 163625666 -13348474 + L1MC2 LINE L1 5717 6229 -115 244 344 10 0 chrX 163625817 163625913 -13348227 - MER117 DNA MER1_type -27 170 74 607 224 84 0 chrX 163626248 163626391 -13347749 - MER58B DNA MER1_type -1 340 186 * 694 256 39 6 chrX 163626373 163626553 -13347587 + LTR16C LTR ERVL 303 488 -3 655 136 19 10 chrX 163627395 163627558 -13346582 + MER20 DNA MER1_type 1 219 0 2327 105 0 16 chrX 163627793 163628108 -13346032 + AluSx SINE Alu 1 310 -2 1547 147 77 53 chrX 163628256 163628672 -13345468 - LTR37A LTR ERV1 0 426 1 502 313 108 0 chrX 163629948 163630124 -13344016 + MIR3 SINE MIR 3 197 -11 30 27 0 0 chrX 163630584 163630621 -13343519 + AT_rich Low_complexity Low_complexity 1 37 0 377 264 75 88 chrX 163630677 163630779 -13343361 + L1ME4a LINE L1 5637 5739 -382 1488 125 0 9 chrX 163630779 163630995 -13343145 + AluSg/x SINE Alu 84 297 -13 377 264 75 88 chrX 163630995 163631131 -13343009 + L1ME4a LINE L1 5739 5872 -249 1212 180 17 44 chrX 163631340 163631635 -13342505 - L1MA9 LINE L1 -36 6276 5990 182 296 28 56 chrX 163632233 163632341 -13341799 + L2 LINE L2 1803 1907 -1407 23 54 0 0 chrX 163632348 163632385 -13341755 + AT_rich Low_complexity Low_complexity 1 37 0 748 207 29 76 chrX 163632386 163632700 -13341440 - L1MC4 LINE L1 -1 8041 7743 30 59 0 0 chrX 163632741 163632792 -13341348 + AT_rich Low_complexity Low_complexity 1 51 0 597 316 135 51 chrX 163632799 163632925 -13341215 - HAL1b LINE L1 -567 781 667 2060 147 0 6 chrX 163632925 163633238 -13340902 + AluSx SINE Alu 2 312 0 597 316 135 51 chrX 163633238 163633741 -13340399 - HAL1b LINE L1 -681 667 99 1903 153 0 10 chrX 163633919 163634227 -13339913 - AluJb SINE Alu -7 305 1 30 0 0 0 chrX 163634548 163634578 -13339562 + GC_rich Low_complexity Low_complexity 1 30 0 1144 208 60 7 chrX 163634726 163635010 -13339130 - L1MC4 LINE L1 -474 7568 7270 351 346 103 48 chrX 163635070 163635455 -13338685 + L2 LINE L2 2340 2702 -570 318 50 0 0 chrX 163635455 163635495 -13338645 + (TA)n Simple_repeat Simple_repeat 1 40 0 351 346 103 48 chrX 163635495 163635923 -13338217 + L2 LINE L2 2702 3271 -1 1718 175 0 7 chrX 163636290 163636602 -13337538 + AluJo SINE Alu 1 310 0 385 296 148 6 chrX 163636870 163637032 -13337108 - MER5A DNA MER1_type -1 188 4 1263 210 93 51 chrX 163637280 163637484 -13336656 + MER39 LTR ERV1 266 382 -203 2724 133 51 18 chrX 163637484 163637936 -13336204 - LTR24 LTR ERV1 0 467 1 1263 210 93 51 chrX 163637936 163638149 -13335991 + MER39 LTR ERV1 382 585 0 480 218 18 36 chrX 163638176 163638286 -13335854 + MER5A DNA MER1_type 5 112 -77 236 253 212 20 chrX 163638206 163638305 -13335835 - MER5A DNA MER1_type -23 166 49 * 378 42 0 0 chrX 163638446 163638494 -13335646 + (TG)n Simple_repeat Simple_repeat 2 49 0 558 225 65 75 chrX 163639525 163639725 -13334415 - MLT1J2 LTR MaLR -6 444 243 3901 168 15 115 chrX 163639852 163640906 -13333234 - LTR28 LTR ERV1 -71 949 1 978 183 25 43 chrX 163640906 163641121 -13333019 - MLT1J2 LTR MaLR -237 213 3 1144 128 44 5 chrX 163642030 163642234 -13331906 + MER4D LTR ERV1 1 212 -660 21 0 0 0 chrX 163642514 163642535 -13331605 + AT_rich Low_complexity Low_complexity 1 21 0 227 167 0 0 chrX 163642774 163642810 -13331330 - MER5B DNA MER1_type -23 155 120 803 262 23 19 chrX 163642814 163643070 -13331070 - MER41E LTR ERV1 -30 482 226 283 362 83 23 chrX 163643389 163643682 -13330458 - L2 LINE L2 -241 3031 2712 633 323 71 39 chrX 163644118 163644204 -13329936 + MIR SINE MIR 1 83 -179 888 251 124 27 chrX 163644204 163644575 -13329565 - MLT1I LTR MaLR -2 407 1 633 323 71 39 chrX 163644575 163644742 -13329398 + MIR SINE MIR 83 262 0 1736 148 8 11 chrX 163646232 163646495 -13327645 - AluSx SINE Alu -15 297 36 282 206 0 0 chrX 163646513 163646576 -13327564 + (CA)n Simple_repeat Simple_repeat 1 63 0 1582 251 33 4 chrX 163646940 163647419 -13326721 + Charlie4a DNA MER1_type 3 495 -13 1010 204 51 41 chrX 163648144 163648458 -13325682 - L1ME3A LINE L1 -2 6168 5852 2003 120 7 7 chrX 163648756 163649055 -13325085 - AluJb SINE Alu -13 299 1 226 243 57 29 chrX 163651282 163651352 -13322788 - MIR SINE MIR -61 147 76 695 203 57 18 chrX 163651419 163651646 -13322494 + L1 LINE L1 4187 4422 -1724 856 210 0 27 chrX 163651648 163651834 -13322306 + MLT1F1 LTR MaLR 385 565 -2 1496 139 36 7 chrX 163651997 163652271 -13321869 - L1MA5 LINE L1 -2 6298 6017 39 0 0 0 chrX 163652693 163652732 -13321408 + AT_rich Low_complexity Low_complexity 1 39 0 514 246 112 49 chrX 163653448 163653753 -13320387 - LTR50 LTR ERVL -1 794 471 22 0 0 0 chrX 163654040 163654062 -13320078 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chrX 163654198 163654230 -13319910 + AT_rich Low_complexity Low_complexity 1 32 0 505 95 0 0 chrX 163654231 163654294 -13319846 - Alu SINE Alu -26 286 224 2002 139 4 0 chrX 163654334 163654614 -13319526 - AluSx SINE Alu -31 281 1 371 188 0 0 chrX 163655523 163655592 -13318548 + MER81 DNA DNA 41 109 -5 1757 137 7 28 chrX 163655807 163656091 -13318049 - AluJo SINE Alu -34 278 1 304 158 18 0 chrX 163656155 163656212 -13317928 + MER58 DNA MER1_type 2361 2418 -2 394 253 44 63 chrX 163656420 163656578 -13317562 - MIR3 SINE MIR -21 187 33 243 0 0 0 chrX 163656856 163656883 -13317257 + (TG)n Simple_repeat Simple_repeat 1 27 0 245 336 56 28 chrX 163656902 163657009 -13317131 - MER5B DNA MER1_type -52 126 17 40 49 0 0 chrX 163657596 163657657 -13316483 + AT_rich Low_complexity Low_complexity 1 61 0 1169 187 19 0 chrX 163658088 163658302 -13315838 - MER20 DNA MER1_type -1 218 1 364 335 101 22 chrX 163659706 163659933 -13314207 - L2 LINE L2 -1 3271 3027 515 273 36 46 chrX 163659995 163660189 -13313951 - MLT1J2 LTR MaLR -3 447 256 1224 301 141 45 chrX 163660330 163661299 -13312841 - L2 LINE L2 -246 3067 2009 253 340 70 0 chrX 163661609 163661709 -13312431 + MIR SINE MIR 46 152 -110 1619 201 27 84 chrX 163662636 163663050 -13311090 - MLT1B LTR MaLR 0 390 1 708 316 78 23 chrX 163663078 163663654 -13310486 + L1ME4a LINE L1 5514 6121 0 1750 238 70 39 chrX 163663796 163664283 -13309857 + MLT1D LTR MaLR 1 502 -3 289 233 33 0 chrX 163664383 163664443 -13309697 - L2 LINE L2 -6 3266 3205 372 319 57 72 chrX 163664949 163665353 -13308787 - L2 LINE L2 -47 3225 2828 892 151 41 101 chrX 163665465 163665683 -13308457 + MER3 DNA MER1_type 5 209 0 2607 134 0 0 chrX 163665837 163666202 -13307938 + MER47A DNA MER2_type 1 365 -1 1270 128 0 16 chrX 163666238 163666425 -13307715 + AluJ SINE Alu 4 187 -125 2196 118 54 33 chrX 163666428 163666976 -13307164 - MER51A LTR ERV1 0 634 1 606 196 0 0 chrX 163666976 163667073 -13307067 + AluJ SINE Alu 187 283 -29 207 0 0 0 chrX 163667073 163667096 -13307044 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1215 146 92 29 chrX 163667321 163667527 -13306613 + MER20 DNA MER1_type 1 219 0 621 232 43 81 chrX 163667535 163667720 -13306420 - MER5B DNA MER1_type 0 178 1 1178 153 30 25 chrX 163667879 163668081 -13306059 + L1PA16 LINE L1 5955 6157 -9 36 23 0 0 chrX 163668081 163668124 -13306016 + AT_rich Low_complexity Low_complexity 1 43 0 641 76 11 0 chrX 163668126 163668218 -13305922 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 1115 148 38 0 chrX 163669141 163669324 -13304816 - MER20 DNA MER1_type -25 194 5 524 325 106 46 chrX 163669420 163669803 -13304337 - L2 LINE L2 -589 2725 2299 2131 116 3 26 chrX 163669803 163670106 -13304034 + AluSx SINE Alu 5 300 -12 524 325 106 46 chrX 163670106 163670261 -13303879 - L2 LINE L2 -1015 2299 2155 323 171 184 0 chrX 163670390 163670466 -13303674 + MER53 DNA DNA 29 118 -71 220 287 221 41 chrX 163670864 163670986 -13303154 - MIR3 SINE MIR -31 177 34 1921 269 39 45 chrX 163672386 163672982 -13301158 - MLT1E LTR MaLR 0 593 2 264 30 0 0 chrX 163673696 163673729 -13300411 + (T)n Simple_repeat Simple_repeat 1 33 0 1139 171 14 5 chrX 163673844 163674054 -13300086 + L1MD3 LINE L1 7705 7916 -79 180 0 0 0 chrX 163674133 163674153 -13299987 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2282 81 27 0 chrX 163675069 163675367 -13298773 + AluSx SINE Alu 5 310 -2 27 49 0 0 chrX 163675493 163675534 -13298606 + AT_rich Low_complexity Low_complexity 1 41 0 1010 151 34 53 chrX 163675969 163676044 -13298096 - MER20 DNA MER1_type -2 217 142 3912 132 52 59 chrX 163676044 163676740 -13297400 - LTR8 LTR ERV1 0 691 1 1010 151 34 53 chrX 163676740 163676870 -13297270 - MER20 DNA MER1_type -77 142 16 2924 133 39 79 chrX 163677296 163677452 -13296688 - L1MB5 LINE L1 0 6174 6013 2394 106 0 3 chrX 163677452 163677763 -13296377 - AluSx SINE Alu -2 310 1 2924 133 39 79 chrX 163677763 163678201 -13295939 - L1MB5 LINE L1 -161 6013 5604 337 315 76 22 chrX 163678555 163678739 -13295401 + MIR SINE MIR 50 243 -19 427 191 24 16 chrX 163679062 163679188 -13294952 + C-rich Low_complexity Low_complexity 5 131 0 560 273 128 65 chrX 163679332 163679995 -13294145 + L2 LINE L2 2538 3242 -71 5322 195 88 26 chrX 163680156 163681200 -13292940 + Charlie1 DNA MER1_type 1 978 -1783 2526 141 111 77 chrX 163681200 163681229 -13292911 + LTR49 LTR ERV1 1 28 -567 1944 151 0 0 chrX 163681229 163681651 -13292489 - AluSx SINE Alu 0 422 1 2526 141 111 77 chrX 163681651 163682195 -13291945 + LTR49 LTR ERV1 28 595 0 5322 195 88 26 chrX 163682195 163682520 -13291620 + Charlie1 DNA MER1_type 978 2761 0 1595 127 119 11 chrX 163682645 163682913 -13291227 - AluJb SINE Alu -15 297 1 3619 146 20 77 chrX 163683249 163683981 -13290159 - LTR8 LTR ERV1 0 691 1 263 135 0 0 chrX 163684100 163684137 -13290003 + 5S rRNA rRNA 3 39 -82 2217 113 7 0 chrX 163684171 163684472 -13289668 - AluSx SINE Alu -9 303 1 526 214 22 112 chrX 163685005 163685241 -13288899 - L1ME2 LINE L1 -4 6162 5940 285 330 70 0 chrX 163685591 163685691 -13288449 + MIR SINE MIR 38 144 -64 21 0 0 0 chrX 163686423 163686444 -13287696 + AT_rich Low_complexity Low_complexity 1 21 0 467 215 130 107 chrX 163686898 163687075 -13287065 - MER5A DNA MER1_type -6 183 3 276 293 76 19 chrX 163687075 163687226 -13286914 - MIR SINE MIR -26 236 77 791 219 15 56 chrX 163687279 163687475 -13286665 + MER5A DNA MER1_type 2 189 0 599 217 143 0 chrX 163687487 163687642 -13286498 - MER5A DNA MER1_type -5 184 4 222 226 0 75 chrX 163688799 163688852 -13285288 + L2 LINE L2 3214 3262 -10 710 145 60 0 chrX 163689001 163689118 -13285022 - L1MC/D LINE L1 -519 5814 5691 23 0 0 0 chrX 163689372 163689395 -13284745 + AT_rich Low_complexity Low_complexity 1 23 0 794 247 128 43 chrX 163690019 163690279 -13283861 - LTR16A LTR ERVL -125 325 51 2228 118 0 3 chrX 163690391 163690697 -13283443 - AluSx SINE Alu -7 305 1 226 311 122 0 chrX 163690718 163690808 -13283332 + L2 LINE L2 3164 3264 -8 243 266 16 0 chrX 163691024 163691088 -13283052 + MER3 DNA MER1_type 1 65 -144 2132 116 85 25 chrX 163691465 163691819 -13282321 + THE1C LTR MaLR 1 375 0 2985 188 73 9 chrX 163694249 163694782 -13279358 - MLT1F1 LTR MaLR 0 567 1 1963 144 7 0 chrX 163695503 163695805 -13278335 - AluSx SINE Alu 0 308 5 292 211 211 0 chrX 163695840 163695949 -13278191 - L1ME4a LINE L1 -12 6109 5978 230 339 26 32 chrX 163696129 163696318 -13277822 - L1ME LINE L1 -356 5765 5578 2494 65 3 7 chrX 163697331 163697640 -13276500 - AluY SINE Alu -2 309 2 319 262 93 29 chrX 163697648 163697820 -13276320 - L1ME4a LINE L1 -3 6118 5936 339 197 0 0 chrX 163697912 163697973 -13276167 - MER116 DNA Mariner -14 66 6 784 104 9 0 chrX 163698625 163698731 -13275409 - MLT1C LTR MaLR 0 467 361 1244 111 0 0 chrX 163698731 163698903 -13275237 - MLT1C LTR MaLR -295 172 1 328 132 0 0 chrX 163698918 163698971 -13275169 + L2 LINE L2 3261 3313 0 1181 265 65 9 chrX 163700027 163700352 -13273788 - LTR16A LTR ERVL 0 450 108 1615 221 53 42 chrX 163700410 163700866 -13273274 + MLT1C LTR MaLR 3 463 -4 344 267 136 48 chrX 163701050 163701256 -13272884 - MIR SINE MIR -26 236 13 213 65 0 0 chrX 163701748 163701779 -13272361 + (A)n Simple_repeat Simple_repeat 1 31 0 200 315 120 0 chrX 163701974 163702066 -13272074 - L2 LINE L2 -35 3278 3176 243 133 33 17 chrX 163702294 163702354 -13271786 + GA-rich Low_complexity Low_complexity 5 65 0 312 333 81 10 chrX 163703006 163703204 -13270936 - L2 LINE L2 -1283 2031 1820 1998 156 0 10 chrX 163703546 163703853 -13270287 + AluJb SINE Alu 1 304 -8 212 236 91 0 chrX 163704156 163704211 -13269929 - MIR SINE MIR 0 262 203 1944 132 0 40 chrX 163706085 163706389 -13267751 + AluJo SINE Alu 1 292 -20 1853 230 68 22 chrX 163706508 163707025 -13267115 + MER69 DNA AcHobo 92 694 -1832 3267 177 69 38 chrX 163707065 163707524 -13266616 + MER69 DNA AcHobo 1648 2147 -379 2356 94 3 0 chrX 163707524 163707833 -13266307 - AluSq SINE Alu -3 310 1 3267 177 69 38 chrX 163707833 163708225 -13265915 + MER69 DNA AcHobo 2147 2525 -1 261 0 0 0 chrX 163708270 163708299 -13265841 + (CA)n Simple_repeat Simple_repeat 1 29 0 288 270 40 8 chrX 163709666 163709792 -13264348 - L1ME4a LINE L1 -23 6098 5969 1835 210 91 24 chrX 163709982 163710313 -13263827 - MLT1D LTR MaLR 0 505 133 2247 138 71 59 chrX 163710313 163710670 -13263470 + MSTA LTR MaLR 3 367 -61 2279 116 0 0 chrX 163710670 163710981 -13263159 + AluSx SINE Alu 1 311 -1 2247 138 71 59 chrX 163710981 163711044 -13263096 + MSTA LTR MaLR 367 428 0 1835 210 91 24 chrX 163711044 163711174 -13262966 - MLT1D LTR MaLR -372 133 13 239 272 48 68 chrX 163711469 163711572 -13262568 + MIR SINE MIR 49 149 -59 22 0 0 0 chrX 163711748 163711770 -13262370 + AT_rich Low_complexity Low_complexity 1 22 0 519 297 208 26 chrX 163711902 163712292 -13261848 + L2 LINE L2 2852 3312 -1 791 163 7 7 chrX 163713300 163713441 -13260699 - L1P LINE L1 -1934 4212 4072 * 17231 135 21 101 chrX 163713440 163713463 -13260677 - L1P LINE L1 -2748 3398 3375 345 24 0 0 chrX 163713463 163713505 -13260635 + (TG)n Simple_repeat Simple_repeat 2 43 0 17231 135 21 101 chrX 163713505 163717161 -13256979 - L1P LINE L1 -2771 3375 12 505 157 0 0 chrX 163717170 163717240 -13256900 - AluSg/x SINE Alu -109 201 132 293 230 163 46 chrX 163717379 163717575 -13256565 + MLT1K LTR MaLR 370 588 0 258 81 0 0 chrX 163717916 163717953 -13256187 + (TG)n Simple_repeat Simple_repeat 2 38 0 375 259 58 29 chrX 163717953 163718092 -13256048 - L1ME4a LINE L1 -22 6099 5957 895 183 21 42 chrX 163718238 163718429 -13255711 - MER58A DNA MER1_type -2 222 36 619 258 5 58 chrX 163719626 163719816 -13254324 - MER5A DNA MER1_type -3 186 7 585 194 166 11 chrX 163720744 163720895 -13253245 + MER5A DNA MER1_type 5 182 -7 2099 120 0 43 chrX 163721100 163721426 -13252714 - AluSx SINE Alu 0 312 1 1341 254 147 43 chrX 163721534 163721882 -13252258 + MLT1G1 LTR MaLR 1 426 -169 2862 83 3 0 chrX 163721882 163722232 -13251908 - THE1A LTR MaLR -4 351 1 1341 254 147 43 chrX 163722232 163722422 -13251718 + MLT1G1 LTR MaLR 426 595 0 753 233 141 0 chrX 163722628 163722791 -13251349 - MER5A DNA MER1_type 0 189 4 770 102 0 86 chrX 163723047 163723175 -13250965 - FLAM_C SINE Alu 0 143 27 2913 124 26 2 chrX 163723334 163723752 -13250388 + MSTC LTR MaLR 1 428 0 2736 139 36 72 chrX 163723845 163724347 -13249793 - MLT2B2 LTR ERVL -30 485 2 184 275 0 0 chrX 163724439 163724479 -13249661 - MIR SINE MIR -72 190 151 506 271 39 86 chrX 163725335 163725590 -13248550 - HAL1 LINE L1 -2262 245 3 360 59 0 0 chrX 163725649 163725700 -13248440 + (TG)n Simple_repeat Simple_repeat 2 52 0 194 250 73 15 chrX 163726082 163726150 -13247990 - L2 LINE L2 0 3313 3242 293 324 52 15 chrX 163726903 163727039 -13247101 + HAL1 LINE L1 1 141 -2366 578 289 58 69 chrX 163727106 163727452 -13246688 + MLT1I LTR MaLR 42 383 -26 1141 253 80 112 chrX 163727507 163728096 -13246044 + HAL1 LINE L1 688 1294 -1213 1604 164 32 48 chrX 163728096 163728408 -13245732 + AluJb SINE Alu 1 307 -5 1141 253 80 112 chrX 163728408 163728551 -13245589 + HAL1 LINE L1 1294 1440 -1067 474 75 38 0 chrX 163728551 163728631 -13245509 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 1141 253 80 112 chrX 163728631 163729017 -13245123 + HAL1 LINE L1 1440 1771 -736 1662 204 29 112 chrX 163729060 163729587 -13244553 - MLT1G LTR MaLR -82 508 26 2271 124 176 0 chrX 163729587 163729951 -13244189 + MSTA LTR MaLR 1 428 0 1662 204 29 112 chrX 163729951 163729967 -13244173 - MLT1G LTR MaLR -564 26 10 2298 99 6 10 chrX 163731296 163731609 -13242531 + AluSx SINE Alu 1 312 0 324 313 96 18 chrX 163732306 163732472 -13241668 - L2 LINE L2 -4 3268 3090 436 311 128 13 chrX 163732555 163732790 -13241350 + MIR SINE MIR 1 262 0 341 149 15 0 chrX 163734191 163734258 -13239882 + CT-rich Low_complexity Low_complexity 1 68 0 742 286 49 53 chrX 163736082 163736366 -13237774 + L1ME4a LINE L1 5539 5822 -299 2359 82 0 16 chrX 163736366 163736669 -13237471 + AluSg SINE Alu 1 298 -12 742 286 49 53 chrX 163736669 163736953 -13237187 + L1ME4a LINE L1 5822 6105 -16 21 36 0 0 chrX 163736954 163736982 -13237158 + AT_rich Low_complexity Low_complexity 1 28 0 1742 177 7 13 chrX 163737064 163737363 -13236777 - AluJb SINE Alu -15 297 1 2187 82 4 0 chrX 163738856 163739124 -13235016 + AluSp SINE Alu 29 297 -16 229 25 0 50 chrX 163739663 163739703 -13234437 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2069 91 4 0 chrX 163740529 163740793 -13233347 + AluSp SINE Alu 39 303 -10 307 274 230 22 chrX 163741190 163741325 -13232815 - MIR3 SINE MIR -25 183 21 249 57 0 0 chrX 163741573 163741608 -13232532 + (TTTTTG)n Simple_repeat Simple_repeat 3 37 0 5249 83 6 3 chrX 163741620 163742261 -13231879 + LTR9B LTR ERV1 1 643 -1 1844 140 0 14 chrX 163742261 163742540 -13231600 - AluSx SINE Alu -37 275 1 729 175 114 81 chrX 163742970 163743181 -13230959 - MER20 DNA MER1_type -1 218 1 658 229 98 71 chrX 163744850 163745273 -13228867 - L2 LINE L2 -124 3189 2743 2673 152 52 7 chrX 163745273 163745733 -13228407 - L1MB5 LINE L1 0 6174 5694 658 229 98 71 chrX 163745733 163745778 -13228362 - L2 LINE L2 -570 2743 2701 2090 97 20 23 chrX 163746156 163746456 -13227684 + AluSg1 SINE Alu 1 299 -10 300 332 135 31 chrX 163747653 163747978 -13226162 + L2 LINE L2 2914 3272 0 240 111 0 0 chrX 163747979 163748015 -13226125 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 215 31 31 0 chrX 163748076 163748108 -13226032 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 425 297 27 14 chrX 163748355 163748503 -13225637 - MIR3 SINE MIR -5 203 54 315 289 63 7 chrX 163748958 163749100 -13225040 + L1ME4a LINE L1 5971 6120 -1 2067 144 0 3 chrX 163749109 163749407 -13224733 + AluSx SINE Alu 1 297 -15 2651 136 11 44 chrX 163749501 163749734 -13224406 + MER65C LTR ERV1 1 211 -250 2575 152 44 7 chrX 163749734 163750141 -13223999 - MSTB LTR MaLR 0 426 5 2651 136 11 44 chrX 163750141 163750384 -13223756 + MER65C LTR ERV1 211 461 0 2096 131 10 10 chrX 163751290 163751602 -13222538 - AluJb SINE Alu 0 312 1 228 348 14 43 chrX 163751738 163751879 -13222261 + L2 LINE L2 3136 3272 0 361 291 34 8 chrX 163751917 163752034 -13222106 - L2 LINE L2 -2 3311 3192 3146 114 44 16 chrX 163752343 163753280 -13220860 - MER11C LTR ERVK 0 1071 1 389 86 17 0 chrX 163753796 163753854 -13220286 + L1PA6 LINE L1 6093 6151 -3 1054 164 13 69 chrX 163755534 163755766 -13218374 - MER20 DNA MER1_type 0 219 1 249 21 43 43 chrX 163755954 163756001 -13218139 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 863 213 4 101 chrX 163756041 163756318 -13217822 + MIR SINE MIR 7 256 -6 387 336 18 21 chrX 163756884 163757127 -13217013 + MIR SINE MIR 20 260 -2 253 254 34 0 chrX 163757239 163757298 -13216842 + MLT1A2 LTR MaLR 5 65 -309 1662 194 109 19 chrX 163757830 163758253 -13215887 + LTR37B LTR ERV1 6 466 -2 872 220 90 29 chrX 163758665 163758942 -13215198 - LTR19C LTR ERV1 0 779 486 * 1634 183 22 80 chrX 163758920 163759335 -13214805 - LTR9 LTR ERV1 -221 391 1 910 187 25 30 chrX 163761305 163761503 -13212637 + MER33 DNA MER1_type 1 197 -127 2667 143 19 7 chrX 163761508 163761656 -13212484 - Tigger2a DNA MER2_type -2283 425 280 2434 76 0 0 chrX 163761656 163761946 -13212194 + AluY SINE Alu 1 290 -21 2667 143 19 7 chrX 163761946 163762217 -13211923 - Tigger2a DNA MER2_type -2428 280 1 478 132 7 118 chrX 163762217 163762351 -13211789 + MER33 DNA MER1_type 236 354 -9 27 0 0 0 chrX 163763700 163763727 -13210413 + AT_rich Low_complexity Low_complexity 1 27 0 352 222 222 15 chrX 163763783 163763866 -13210274 - MER5B DNA MER1_type -15 163 99 401 0 20 0 chrX 163763866 163763915 -13210225 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 352 222 222 15 chrX 163763915 163763966 -13210174 - MER5B DNA MER1_type -79 99 1 2066 128 3 0 chrX 163763988 163764277 -13209863 - AluSx SINE Alu -18 294 5 202 87 43 0 chrX 163764283 163764329 -13209811 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 653 205 99 31 chrX 163764552 163764713 -13209427 - MER5A DNA MER1_type -2 187 16 279 264 99 11 chrX 163764765 163764856 -13209284 - L2 LINE L2 -20 3252 3154 2319 108 0 7 chrX 163764964 163765269 -13208871 + AluSx SINE Alu 1 303 -9 21 36 0 0 chrX 163765316 163765344 -13208796 + AT_rich Low_complexity Low_complexity 1 28 0 515 215 17 17 chrX 163765516 163765688 -13208452 + G-rich Low_complexity Low_complexity 3 174 0 458 195 23 8 chrX 163765727 163765855 -13208285 + G-rich Low_complexity Low_complexity 4 133 0 837 212 30 35 chrX 163765856 163766087 -13208053 + L1MB8 LINE L1 5935 6164 -14 23 0 0 0 chrX 163766135 163766158 -13207982 + AT_rich Low_complexity Low_complexity 1 23 0 1587 136 32 51 chrX 163767489 163767950 -13206190 - MLT1D LTR MaLR -4 501 1 369 0 0 0 chrX 163767985 163768026 -13206114 + (CAT)n Simple_repeat Simple_repeat 2 42 0 2479 82 3 39 chrX 163768027 163768074 -13206066 + THE1C-int LTR MaLR 1238 1285 -295 2324 89 7 10 chrX 163768074 163768376 -13205764 + AluSp SINE Alu 1 301 -12 2479 82 3 39 chrX 163768376 163768684 -13205456 + THE1C-int LTR MaLR 1285 1580 0 2105 135 50 19 chrX 163768684 163769046 -13205094 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chrX 163769101 163769123 -13205017 + AT_rich Low_complexity Low_complexity 1 22 0 1701 221 53 18 chrX 163769525 163769959 -13204181 + L1ME1 LINE L1 5713 6161 -5 2288 161 57 163 chrX 163770044 163770531 -13203609 - LTR8A LTR ERV1 -3 724 356 907 163 0 15 chrX 163770531 163770666 -13203474 + FLAM_C SINE Alu 1 133 0 2288 161 57 163 chrX 163770666 163770988 -13203152 - LTR8A LTR ERV1 -371 356 1 3527 159 79 20 chrX 163771092 163771779 -13202361 - LTR8A LTR ERV1 0 727 1 2721 188 18 10 chrX 163772982 163773497 -13200643 + L1MB5 LINE L1 5650 6168 -6 839 173 0 15 chrX 163773526 163773659 -13200481 - FLAM_C SINE Alu -11 132 2 956 131 23 11 chrX 163773661 163773836 -13200304 + L1MA8 LINE L1 6108 6284 -7 32 67 0 0 chrX 163773922 163773982 -13200158 + AT_rich Low_complexity Low_complexity 1 60 0 222 324 38 19 chrX 163774362 163774467 -13199673 + MIR SINE MIR 24 130 -78 747 170 152 6 chrX 163774570 163774735 -13199405 - MER5A DNA MER1_type 0 189 1 255 296 70 0 chrX 163774750 163774844 -13199296 + MER5B DNA MER1_type 2 111 -78 192 329 145 0 chrX 163775896 163775972 -13198168 + L2 LINE L2 3193 3279 -34 1063 166 29 62 chrX 163776274 163776515 -13197625 - L1MA9 LINE L1 -280 6032 5800 393 165 74 21 chrX 163776475 163776630 -13197510 + L1MA9 LINE L1 5997 6159 -52 * 572 189 28 0 chrX 163776630 163776736 -13197404 + Tigger5 DNA MER2_type 2215 2323 0 2256 158 64 52 chrX 163776758 163777239 -13196901 - LTR22B LTR ERVK -5 487 1 288 286 10 41 chrX 163777480 163777514 -13196626 - MIR SINE MIR -70 138 104 789 191 150 116 chrX 163777514 163777953 -13196187 - LTR16A1 LTR ERVL 0 457 4 288 286 10 41 chrX 163777953 163778016 -13196124 - MIR SINE MIR -104 104 44 2613 68 0 0 chrX 163778076 163778387 -13195753 - AluY SINE Alu 0 311 1 272 300 65 27 chrX 163778425 163778572 -13195568 - MIR SINE MIR -63 145 45 49 18 0 0 chrX 163779636 163779692 -13194448 + AT_rich Low_complexity Low_complexity 1 56 0 856 167 0 0 chrX 163780011 163780155 -13193985 - L1MB7 LINE L1 -19 6165 6022 2593 162 24 6 chrX 163780156 163780367 -13193773 - L1MA7 LINE L1 -42 6249 6039 630 275 10 71 chrX 163780367 163780662 -13193478 - L1PB2 LINE L1 -123 6028 5752 348 196 37 28 chrX 163780814 163780921 -13193219 - L1ME4a LINE L1 -47 6074 5967 1840 132 3 75 chrX 163781272 163781605 -13192535 + AluJb SINE Alu 1 309 -3 292 243 58 39 chrX 163781721 163781824 -13192316 - MLT1J LTR MaLR -8 503 399 6086 178 184 57 chrX 163781998 163783554 -13190586 - MER52A LTR ERV1 -2 1753 1 400 285 70 27 chrX 163783568 163783755 -13190385 - MLT1J LTR MaLR -331 180 1 223 255 31 71 chrX 163783885 163783983 -13190157 - MIR SINE MIR -50 212 119 40181 40 5 2 chrX 163783987 163788866 -13185274 + L1P LINE L1 13 4908 -1238 471 288 146 5 chrX 163789016 163789221 -13184919 - MIR SINE MIR -10 252 19 23 0 0 0 chrX 163789603 163789626 -13184514 + AT_rich Low_complexity Low_complexity 1 23 0 268 163 20 0 chrX 163789779 163789828 -13184312 - MER116 DNA Mariner -30 50 1 1144 206 57 0 chrX 163789844 163790053 -13184087 - MER58A DNA MER1_type -3 221 1 244 263 0 0 chrX 163790085 163790155 -13183985 + T-rich Low_complexity Low_complexity 1 73 -7 1112 70 21 0 chrX 163790155 163790298 -13183842 - L1PA7 LINE L1 0 6154 6009 195 369 136 10 chrX 163790791 163790894 -13183246 + MIR3 SINE MIR 45 160 -48 263 178 0 0 chrX 163790898 163790943 -13183197 - Charlie8 DNA MER1_type -1003 1414 1370 923 217 42 37 chrX 163791108 163791325 -13182815 - MER20 DNA MER1_type -1 218 1 622 191 130 37 chrX 163791374 163791536 -13182604 + MER5A DNA MER1_type 2 178 -11 1974 129 32 44 chrX 163791832 163792173 -13181967 - MER44D DNA MER2_type 0 609 3 776 112 0 0 chrX 163792319 163792417 -13181723 - AluSg/x SINE Alu -19 291 194 8131 87 8 0 chrX 163792417 163794251 -13179889 - L1PA8 LINE L1 -6 6166 4323 287 296 57 28 chrX 163794485 163794661 -13179479 - L1MC/D LINE L1 -762 5597 5417 1565 170 0 8 chrX 163794664 163794929 -13179211 - AluJb SINE Alu -11 301 39 3122 150 46 28 chrX 163795245 163795673 -13178467 + L1MB4 LINE L1 5604 6046 -134 1795 168 34 0 chrX 163795673 163795970 -13178170 - AluSx SINE Alu -5 307 1 3122 150 46 28 chrX 163795970 163796106 -13178034 + L1MB4 LINE L1 6046 6178 -2 388 286 112 44 chrX 163796200 163796876 -13177264 - L1MC/D LINE L1 -2685 3461 2740 1659 141 160 10 chrX 163797028 163797340 -13176800 + MSTA LTR MaLR 1 359 -69 657 86 0 0 chrX 163797340 163797433 -13176707 - L1M3 LINE L1 -500 5680 5588 2430 93 0 0 chrX 163797459 163797769 -13176371 - AluSg SINE Alu 0 310 1 818 129 0 168 chrX 163798077 163798279 -13175861 + MER45A DNA AcHobo 1 168 -10 665 167 0 0 chrX 163799754 163799850 -13174290 + AluSg/x SINE Alu 177 272 -38 214 230 37 118 chrX 163800672 163800807 -13173333 + L2 LINE L2 2833 2956 -358 3249 157 23 14 chrX 163800834 163801390 -13172750 - L1MB7 LINE L1 -11 6173 5613 3583 135 24 24 chrX 163801390 163801974 -13172166 + MER41B LTR ERV1 4 587 -48 1636 181 21 9 chrX 163801978 163802304 -13171836 - L1MB7 LINE L1 -565 5619 5290 359 317 0 25 chrX 163802337 163802457 -13171683 + L2 LINE L2 3197 3313 0 203 0 37 0 chrX 163802939 163802966 -13171174 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 475 264 289 0 chrX 163804123 163804324 -13169816 + MIR SINE MIR 2 260 -2 459 249 102 69 chrX 163804337 163804642 -13169498 + L1ME4a LINE L1 5790 6104 -17 1891 149 70 24 chrX 163805342 163805712 -13168428 + LTR48 LTR ERV1 401 787 0 835 134 0 24 chrX 163806025 163806152 -13167988 - FLAM_C SINE Alu -11 132 9 487 320 11 17 chrX 163806491 163806669 -13167471 + MER5A DNA MER1_type 7 183 -6 1162 180 9 35 chrX 163806719 163807041 -13167099 - MLT1A1 LTR MaLR 0 365 1 639 182 51 132 chrX 163807172 163807497 -13166643 + L1ME1 LINE L1 5177 5472 -694 856 155 0 0 chrX 163807519 163807648 -13166492 - FRAM SINE Alu -23 153 25 2861 200 59 15 chrX 163807690 163808356 -13165784 + L1ME1 LINE L1 5467 6161 -5 2299 99 0 19 chrX 163808518 163808830 -13165310 + AluSg1 SINE Alu 1 306 -3 209 195 0 0 chrX 163809273 163809314 -13164826 + A-rich Low_complexity Low_complexity 2 42 0 227 293 50 20 chrX 163810423 163810522 -13163618 + L1ME LINE L1 5572 5673 -489 348 297 45 0 chrX 163811329 163811440 -13162700 + L2 LINE L2 3197 3312 -1 1070 152 40 62 chrX 163812271 163812495 -13161645 + MER20 DNA MER1_type 1 219 0 1457 149 71 22 chrX 163812853 163813154 -13160986 + AluSg1 SINE Alu 1 314 0 212 175 0 25 chrX 163814932 163814972 -13159168 + (CA)n Simple_repeat Simple_repeat 2 40 0 469 198 30 0 chrX 163815724 163815825 -13158315 - LTR37B LTR ERV1 0 468 365 198 0 0 0 chrX 163815841 163815863 -13158277 + (CA)n Simple_repeat Simple_repeat 2 23 0 360 200 35 0 chrX 163815865 163815950 -13158190 - LTR37B LTR ERV1 -157 311 224 227 73 73 0 chrX 163815963 163816018 -13158122 + T-rich Low_complexity Low_complexity 2 60 0 661 213 25 45 chrX 163816074 163816276 -13157864 - LTR37B LTR ERV1 -267 201 4 7805 28 0 0 chrX 163817025 163818457 -13155683 - L1PA3 LINE L1 0 6155 4724 1610 45 10 0 chrX 163818575 163818777 -13155363 + L1PA6 LINE L1 5324 5527 -627 4997 62 2 0 chrX 163818930 163819543 -13154597 + L1PA6 LINE L1 5536 6149 -5 1789 130 27 57 chrX 163820382 163820472 -13153668 + MER44D DNA MER2_type 16 107 -2384 1872 146 10 7 chrX 163820472 163820774 -13153366 + AluSx SINE Alu 1 303 -9 1789 130 27 57 chrX 163820774 163821014 -13153126 + MER44D DNA MER2_type 107 606 -3 402 160 0 13 chrX 163821950 163822025 -13152115 - FLAM_A SINE Alu -7 135 62 219 167 0 0 chrX 163822820 163822862 -13151278 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 2351 44 0 0 chrX 163822862 163823132 -13151008 + AluY SINE Alu 40 309 -2 285 211 211 0 chrX 163824514 163824623 -13149517 + L1ME4a LINE L1 5978 6109 -12 1951 148 7 0 chrX 163824658 163824960 -13149180 + AluSx SINE Alu 5 308 0 235 158 0 0 chrX 163825169 163825207 -13148933 - MER5B DNA MER1_type -135 43 6 395 249 148 47 chrX 163825833 163826002 -13148138 + MER5A DNA MER1_type 4 189 0 426 226 83 15 chrX 163826006 163826139 -13148001 - MER103 DNA DNA -20 146 5 478 251 43 59 chrX 163826164 163826216 -13147924 - L1ME3A LINE L1 -1 6169 6118 2735 202 8 8 chrX 163826216 163826735 -13147405 + LTR40a LTR ERVL 1 519 0 478 251 43 59 chrX 163826735 163826869 -13147271 - L1ME3A LINE L1 -52 6118 5986 599 264 101 14 chrX 163826934 163827142 -13146998 - MIR SINE MIR -6 256 31 2318 89 0 35 chrX 163827143 163827458 -13146682 - AluSq SINE Alu -9 304 1 388 129 14 43 chrX 163828500 163828570 -13145570 - MLT1G LTR MaLR -300 290 223 1975 152 0 13 chrX 163828728 163829043 -13145097 - AluSx SINE Alu -1 311 1 743 284 153 30 chrX 163829402 163829832 -13144308 - MLT1H1 LTR MaLR -8 547 65 2399 86 0 7 chrX 163830208 163830512 -13143628 - AluSg SINE Alu -8 302 1 1301 256 39 58 chrX 163830929 163831563 -13142577 + L1MEc LINE L1 1734 2355 -4041 1006 207 64 107 chrX 163831835 163832322 -13141818 - LTR37B LTR ERV1 0 468 3 519 296 15 35 chrX 163832397 163832600 -13141540 - MIR SINE MIR -36 226 28 23 33 0 0 chrX 163832721 163832751 -13141389 + AT_rich Low_complexity Low_complexity 1 30 0 380 258 157 25 chrX 163833254 163833413 -13140727 - MER5A DNA MER1_type -1 188 9 452 172 20 10 chrX 163833434 163833533 -13140607 - MER5B DNA MER1_type -6 172 73 6206 112 8 10 chrX 163833732 163834637 -13139503 + MER4D LTR ERV1 1 903 0 234 250 83 0 chrX 163834707 163834779 -13139361 + MER97b DNA MER1_type? 27 104 -949 390 161 0 0 chrX 163834795 163834857 -13139283 + MER89 LTR ERV1 12 73 -486 * 1864 175 86 3 chrX 163834832 163835180 -13138960 + MER89 LTR ERV1 183 559 0 300 225 56 0 chrX 163835180 163835259 -13138881 + MER97b DNA MER1_type? 89 172 -881 2227 113 7 0 chrX 163836449 163836749 -13137391 + AluSx SINE Alu 1 302 -10 265 135 0 0 chrX 163836783 163836820 -13137320 - 5S rRNA rRNA -82 39 3 735 132 0 73 chrX 163836939 163837075 -13137065 + LTR8 LTR ERV1 1 126 -565 500 262 58 16 chrX 163837187 163837378 -13136762 - MIR SINE MIR -61 201 3 998 137 0 46 chrX 163837793 163837968 -13136172 + MER20 DNA MER1_type 1 167 -52 1940 171 119 30 chrX 163838264 163838725 -13135415 + MLT1D LTR MaLR 1 502 -3 976 237 88 48 chrX 163840344 163840541 -13133599 + L1ME3A LINE L1 5462 5650 -520 2218 164 0 0 chrX 163840541 163840888 -13133252 + MER7A DNA MER2_type 2 346 0 976 237 88 48 chrX 163840888 163841087 -13133053 + L1ME3A LINE L1 5650 5874 -296 314 139 0 76 chrX 163841090 163841169 -13132971 + L1ME3A LINE L1 6027 6099 -71 850 263 0 0 chrX 163841320 163841495 -13132645 + MER58A DNA MER1_type 1 175 -49 234 204 20 0 chrX 163842419 163842468 -13131672 + CT-rich Low_complexity Low_complexity 4 53 0 526 227 8 70 chrX 163842649 163842712 -13131428 + MLT1E3 LTR MaLR 505 558 -66 1768 176 10 6 chrX 163842712 163843024 -13131116 + AluSq SINE Alu 1 313 0 526 227 8 70 chrX 163843024 163843088 -13131052 + MLT1E3 LTR MaLR 558 624 0 286 179 265 8 chrX 163843147 163843264 -13130876 - MER5C DNA MER1_type -6 318 172 406 217 181 12 chrX 163843287 163843453 -13130687 - MER5C DNA MER1_type -92 232 39 383 324 51 23 chrX 163843503 163843719 -13130421 - MIR SINE MIR 0 262 41 337 313 21 21 chrX 163844133 163844277 -13129863 - MER5B DNA MER1_type -24 154 11 25 0 0 0 chrX 163844720 163844745 -13129395 + AT_rich Low_complexity Low_complexity 1 25 0 313 261 60 92 chrX 163844777 163844961 -13129179 + MIR3 SINE MIR 7 184 -24 355 300 91 0 chrX 163845341 163845451 -13128689 - MIR SINE MIR -55 207 88 1962 169 100 3 chrX 163846209 163846558 -13127582 + MER21B LTR ERV1 1 383 -480 324 0 0 0 chrX 163846739 163846775 -13127365 + (TG)n Simple_repeat Simple_repeat 2 37 0 1571 178 34 14 chrX 163847952 163848245 -13125895 - MER58B DNA MER1_type 0 341 43 732 234 0 0 chrX 163850152 163850323 -13123817 + G-rich Low_complexity Low_complexity 1 171 0 412 210 16 24 chrX 163850343 163850467 -13123673 + G-rich Low_complexity Low_complexity 1 123 0 699 112 0 0 chrX 163850483 163850590 -13123550 + (TA)n Simple_repeat Simple_repeat 1 107 0 2086 210 46 44 chrX 163850590 163851094 -13123046 - MLT2B3 LTR ERVL -48 506 2 234 35 0 0 chrX 163851094 163851123 -13123017 - MLT1F LTR MaLR -513 29 1 1745 119 4 15 chrX 163852473 163852733 -13121407 + AluY SINE Alu 1 257 -54 212 209 14 40 chrX 163852743 163852891 -13121249 + C-rich Low_complexity Low_complexity 4 147 0 443 274 153 6 chrX 163853766 163853923 -13120217 + MER5A DNA MER1_type 10 189 0 219 286 63 48 chrX 163853928 163854054 -13120086 + MIR SINE MIR 19 146 -62 703 176 33 38 chrX 163854064 163854370 -13119770 - MLT1A1 LTR MaLR 0 374 24 300 306 16 16 chrX 163854372 163854496 -13119644 + C-rich Low_complexity Low_complexity 4 127 0 234 217 0 0 chrX 163854515 163854584 -13119556 + C-rich Low_complexity Low_complexity 1 69 0 340 306 19 64 chrX 163855166 163855323 -13118817 + L2 LINE L2 3116 3265 -7 582 282 72 0 chrX 163855390 163855571 -13118569 + MIR SINE MIR 3 196 -66 23 33 0 0 chrX 163855695 163855725 -13118415 + AT_rich Low_complexity Low_complexity 1 30 0 2356 102 10 0 chrX 163856067 163856371 -13117769 - AluSx SINE Alu -5 307 1 1141 151 55 83 chrX 163857228 163857540 -13116600 - MER33 DNA MER1_type -1 323 21 1585 159 0 0 chrX 163858622 163858854 -13115286 - AluJb SINE Alu -80 232 1 2132 121 3 3 chrX 163859313 163859618 -13114522 + AluSx SINE Alu 1 305 -7 2847 224 55 18 chrX 164060332 164061103 -12913037 + L1ME2 LINE L1 5376 6334 0 187 247 97 32 chrX 164061519 164061612 -12912528 + MIR SINE MIR 108 206 -56 706 256 76 31 chrX 164061961 164062184 -12911956 + MIR SINE MIR 30 262 0 790 220 6 6 chrX 164062763 164062931 -12911209 - MER3 DNA MER1_type 0 209 42 752 301 35 19 chrX 164063044 164063300 -12910840 + MIR SINE MIR 3 262 0 387 0 0 0 chrX 164064038 164064081 -12910059 + (T)n Simple_repeat Simple_repeat 1 43 0 864 338 117 27 chrX 164064657 164065460 -12908680 - L2 LINE L2 -744 2570 1696 2230 81 0 7 chrX 164066291 164066575 -12907565 - AluY SINE Alu -29 282 1 405 236 55 55 chrX 164066881 164067008 -12907132 - L2 LINE L2 0 3313 3187 194 257 95 40 chrX 164067396 164067470 -12906670 + MIR3 SINE MIR 85 162 -46 26 0 0 0 chrX 164067588 164067614 -12906526 + AT_rich Low_complexity Low_complexity 1 26 0 599 303 40 94 chrX 164067662 164067746 -12906394 - L2 LINE L2 -2 3270 3183 2450 64 7 0 chrX 164067746 164068044 -12906096 + AluSp SINE Alu 1 300 -13 599 303 40 94 chrX 164068044 164068309 -12905831 - L2 LINE L2 -89 3183 2940 3857 124 39 20 chrX 164068610 164068703 -12905437 + L1PB3 LINE L1 5496 5586 -568 2359 88 0 0 chrX 164068703 164068998 -12905142 + AluSx SINE Alu 1 295 -17 3857 124 39 20 chrX 164068998 164069551 -12904589 + L1PB3 LINE L1 5586 6154 0 418 262 9 0 chrX 164069730 164069837 -12904303 - MER45A DNA AcHobo 0 178 71 1760 84 0 0 chrX 164069843 164070094 -12904046 - L1P LINE L1 -868 5278 5028 * 4509 50 0 4 chrX 164070092 164070653 -12903487 + L1PA8A LINE L1 5542 6100 -31 25 31 0 0 chrX 164070653 164070685 -12903455 + AT_rich Low_complexity Low_complexity 1 32 0 348 250 0 0 chrX 164070706 164070770 -12903370 - MER45A DNA AcHobo -113 65 2 5550 141 17 27 chrX 164071079 164072011 -12902129 + MER49 LTR ERV1 1 923 0 24 0 0 0 chrX 164072913 164072937 -12901203 + AT_rich Low_complexity Low_complexity 1 24 0 212 194 0 0 chrX 164073177 164073213 -12900927 + (TA)n Simple_repeat Simple_repeat 2 37 0 2280 68 19 0 chrX 164073240 164073548 -12900592 - L1PA8 LINE L1 -6 6166 5853 336 314 109 6 chrX 164074901 164075057 -12899083 - L1ME LINE L1 -492 5629 5458 509 309 7 0 chrX 164075200 164075352 -12898788 - L2 LINE L2 -478 2836 2684 793 166 53 6 chrX 164075485 164075654 -12898486 + MER53 DNA DNA 10 186 -3 372 317 169 0 chrX 164075721 164075863 -12898277 + L2 LINE L2 3102 3267 -5 21 36 0 0 chrX 164076337 164076365 -12897775 + AT_rich Low_complexity Low_complexity 1 28 0 379 200 0 0 chrX 164076399 164076479 -12897661 - L1MA5 LINE L1 0 6300 6221 917 205 0 25 chrX 164076479 164076679 -12897461 + L1MA5 LINE L1 5834 6028 -272 387 105 0 0 chrX 164076979 164077036 -12897104 + (TG)n Simple_repeat Simple_repeat 2 58 0 1577 270 82 90 chrX 164077742 164078424 -12895716 + L1M4 LINE L1 2509 3195 -2951 3868 53 41 0 chrX 164078424 164078916 -12895224 - L1PA5 LINE L1 -9 6145 5634 1577 270 82 90 chrX 164078916 164079805 -12894335 + L1M4 LINE L1 3195 4089 -2057 2513 50 0 0 chrX 164079805 164080104 -12894036 - AluY SINE Alu -12 299 1 1577 270 82 90 chrX 164080104 164081208 -12892932 + L1M4 LINE L1 4089 5165 -981 1242 251 40 23 chrX 164081228 164081582 -12892558 + L1M3e LINE L1 11 370 -6660 4058 228 65 6 chrX 164081605 164082802 -12891338 + L1ME2 LINE L1 2295 3563 -2819 261 0 0 0 chrX 164082806 164082835 -12891305 + (CA)n Simple_repeat Simple_repeat 2 30 0 2062 155 0 9 chrX 164082835 164083184 -12890956 + L1MA9 LINE L1 5794 6139 -173 1238 134 28 0 chrX 164083196 164083413 -12890727 - L1MA4 LINE L1 -7 6293 6071 3197 106 24 18 chrX 164083413 164083911 -12890229 + L1MA4A LINE L1 5577 6077 -226 426 262 19 0 chrX 164083913 164084020 -12890120 - L1ME LINE L1 -5956 114 6 7052 54 35 0 chrX 164084528 164085443 -12888697 - L1PA7 LINE L1 -5 6149 5229 988 126 0 70 chrX 164085443 164085641 -12888499 + L1MA9 LINE L1 6128 6312 0 2340 231 71 57 chrX 164085645 164086138 -12888002 + L1ME2 LINE L1 5398 5882 -518 1433 214 44 16 chrX 164086138 164086502 -12887638 - MLT1A2 LTR MaLR 0 374 1 2340 231 71 57 chrX 164086502 164086993 -12887147 + L1ME2 LINE L1 5882 6397 -3 417 363 24 14 chrX 164137322 164137611 -12836529 + L1ME3A LINE L1 5383 5674 -488 1197 292 54 20 chrX 164137646 164138169 -12835971 + L2 LINE L2 2743 3292 -21 626 251 75 35 chrX 164138178 164138205 -12835935 + L1ME3A LINE L1 5675 5699 -471 1957 149 30 0 chrX 164138205 164138540 -12835600 - L1MC1 LINE L1 0 6333 5989 626 251 75 35 chrX 164138540 164138777 -12835363 + L1ME3A LINE L1 5699 5949 -221 226 225 0 0 chrX 164139570 164139610 -12834530 + polypyrimidine Low_complexity Low_complexity 1 40 0 1825 171 16 29 chrX 164139741 164140116 -12834024 + L1MA9 LINE L1 5848 6217 -95 359 286 12 0 chrX 164140118 164140202 -12833938 - MIR3 SINE MIR -54 154 70 1360 175 5 0 chrX 164140303 164140526 -12833614 + MER58A DNA MER1_type 1 224 0 582 278 187 14 chrX 164141275 164141484 -12832656 - MIR SINE MIR -5 257 13 214 317 119 30 chrX 164141706 164141807 -12832333 - L2 LINE L2 -8 3264 3155 246 358 0 0 chrX 164143357 164143452 -12830688 + T-rich Low_complexity Low_complexity 2 96 0 189 154 0 0 chrX 164143468 164143507 -12830633 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 362 244 0 56 chrX 164146744 164146834 -12827306 + MER5A DNA MER1_type 105 189 0 639 223 36 72 chrX 164147472 164147527 -12826613 - L1ME3A LINE L1 -76 6028 5973 2331 100 0 0 chrX 164147527 164147836 -12826304 + AluSx SINE Alu 1 309 -3 639 223 36 72 chrX 164147836 164148031 -12826109 - L1ME3A LINE L1 -131 5973 5787 3040 265 131 42 chrX 164148048 164148178 -12825962 - L1ME3A LINE L1 -894 5186 5069 7535 30 0 1 chrX 164148178 164149409 -12824731 + L1PA3 LINE L1 4924 6153 -2 3040 265 131 42 chrX 164149409 164150410 -12823730 - L1ME3A LINE L1 -1011 5069 4158 548 55 0 0 chrX 164150410 164150483 -12823657 + L1PA5 LINE L1 6082 6154 0 3040 265 131 42 chrX 164150483 164151447 -12822693 - L1ME3A LINE L1 -1922 4158 2904 424 304 120 54 chrX 164151497 164151889 -12822251 - L1ME3A LINE L1 -5133 937 520 7721 20 0 0 chrX 164152005 164153320 -12820820 + L1PA3 LINE L1 4832 6155 0 244 329 0 0 chrX 164153670 164153740 -12820400 - MER5A DNA MER1_type -56 133 64 231 315 47 47 chrX 164154111 164154238 -12819902 - L2 LINE L2 -214 3058 2932 692 298 0 11 chrX 164154253 164154444 -12819696 - MER5A DNA MER1_type 0 189 1 898 304 82 25 chrX 164154852 164155420 -12818720 + L2 LINE L2 2702 3304 -9 815 267 69 16 chrX 164156342 164156589 -12817551 - MIR SINE MIR 0 262 3 620 282 79 15 chrX 164156642 164156844 -12817296 - MIR SINE MIR -1 261 47 1825 167 0 0 chrX 164159194 164159482 -12814658 - AluJb SINE Alu -13 299 12 332 177 97 0 chrX 164159766 164159828 -12814312 + MER58A DNA MER1_type 1 68 -39 275 0 0 0 chrX 164159829 164159861 -12814279 + MER58A DNA MER1_type 176 207 -17 2395 146 14 74 chrX 164159915 164160402 -12813738 + LTR32 LTR ERVL 14 471 0 279 321 54 9 chrX 164160403 164160515 -12813625 - MER5A DNA MER1_type -37 152 36 503 262 140 43 chrX 164160744 164160908 -12813232 + MER5A DNA MER1_type 10 189 0 433 319 92 22 chrX 164160958 164161187 -12812953 + MIR SINE MIR 4 248 -14 229 207 11 138 chrX 164161197 164161284 -12812856 + MIR SINE MIR 108 183 -79 614 294 19 34 chrX 164161947 164162179 -12811961 - MIR SINE MIR -13 249 24 234 0 0 0 chrX 164162903 164162929 -12811211 + (T)n Simple_repeat Simple_repeat 1 26 0 415 307 16 16 chrX 164163064 164163191 -12810949 + MER5A DNA MER1_type 7 133 -56 29670 106 12 62 chrX 164163948 164170428 -12803712 + L1PA7 LINE L1 5 6152 -2 338 248 67 0 chrX 164170525 164170630 -12803510 + MER94 DNA DNA 4 115 -19 473 121 61 0 chrX 164170921 164171086 -12803054 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 44 0 0 chrX 164171089 164171134 -12803006 + AT_rich Low_complexity Low_complexity 1 45 0 429 157 72 12 chrX 164171135 164171301 -12802839 + (TTATA)n Simple_repeat Simple_repeat 3 178 0 357 107 77 12 chrX 164171310 164171479 -12802661 + (TA)n Simple_repeat Simple_repeat 1 180 0 237 251 58 23 chrX 164171489 164171835 -12802305 + (CATA)n Simple_repeat Simple_repeat 1 358 0 * 262 226 45 40 chrX 164171829 164172006 -12802134 + (TA)n Simple_repeat Simple_repeat 2 179 0 228 250 53 40 chrX 164173013 164173089 -12801051 - MIR3 SINE MIR -3 205 129 237 341 78 39 chrX 164173691 164173820 -12800320 + L2 LINE L2 3136 3269 -3 212 192 19 39 chrX 164173910 164173962 -12800178 - L2 LINE L2 0 3272 3222 311 378 49 49 chrX 164174495 164174842 -12799298 + L2 LINE L2 2918 3264 -8 494 268 0 22 chrX 164176060 164176198 -12797942 - LTR16C LTR ERVL -3 488 354 250 236 56 0 chrX 164176469 164176541 -12797599 + MIR SINE MIR 117 192 -70 180 394 14 0 chrX 164176617 164176688 -12797452 - L2 LINE L2 -206 3066 2995 857 53 0 18 chrX 164176989 164177003 -12797137 - L1PA5 LINE L1 -2 6152 6139 276 53 0 0 chrX 164177003 164177041 -12797099 + (TA)n Simple_repeat Simple_repeat 2 39 0 857 53 0 18 chrX 164177041 164177140 -12797000 - L1PA5 LINE L1 -15 6139 6041 299 27 0 0 chrX 164177141 164177178 -12796962 + L1PA6 LINE L1 5848 5884 -270 458 258 63 67 chrX 164177178 164177477 -12796663 + MLT1I LTR MaLR 102 399 -10 240 204 0 0 chrX 164177728 164177772 -12796368 + L2 LINE L2 3261 3304 -9 520 350 61 37 chrX 164177876 164178253 -12795887 + L1M3c LINE L1 174 559 -5754 329 169 56 0 chrX 164178604 164178675 -12795465 + L1M3c LINE L1 999 1073 -5240 33 0 0 0 chrX 164178769 164178802 -12795338 + AT_rich Low_complexity Low_complexity 1 33 0 2347 238 44 36 chrX 164178804 164179148 -12794992 + L1M3c LINE L1 777 1117 -5261 2321 93 0 3 chrX 164179148 164179449 -12794691 + AluY SINE Alu 1 300 -11 2347 238 44 36 chrX 164179449 164179947 -12794193 + L1M3c LINE L1 1117 1448 -4930 2280 109 0 13 chrX 164179947 164180260 -12793880 + AluSg SINE Alu 1 309 -1 2347 238 44 36 chrX 164180260 164180679 -12793461 + L1M3c LINE L1 1448 1862 -4516 1477 178 113 37 chrX 164180749 164181182 -12792958 + MER31B LTR ERV1 1 466 0 1319 226 16 55 chrX 164186126 164186373 -12787767 - MLT1A1 LTR MaLR 0 365 137 2340 71 0 36 chrX 164186373 164186681 -12787459 + AluY SINE Alu 1 297 -14 1319 226 16 55 chrX 164186681 164186813 -12787327 - MLT1A1 LTR MaLR -228 137 1 284 371 115 38 chrX 164189172 164190315 -12783825 - L2 LINE L2 -26 3287 2053 194 293 263 0 chrX 164190339 164190438 -12783702 + L2 LINE L2 3189 3313 0 1262 74 11 0 chrX 164190565 164190741 -12783399 - L1PB1 LINE L1 -472 5679 5502 * 2451 110 64 0 chrX 164190736 164191127 -12783013 + L1PB1 LINE L1 5690 6105 -46 * 6590 216 31 2 chrX 164191121 164192753 -12781387 - L1PB1 LINE L1 -1618 4528 2849 2760 138 12 7 chrX 164192763 164194240 -12779900 + L1PB1 LINE L1 4540 6145 -6 212 0 36 0 chrX 164194481 164194509 -12779631 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2111 102 3 3 chrX 164194513 164194797 -12779343 - AluSg SINE Alu -26 284 1 278 310 89 49 chrX 164195686 164195889 -12778251 - MIR SINE MIR -15 247 37 490 294 150 5 chrX 164196146 164196333 -12777807 + MIR SINE MIR 37 250 -12 317 378 66 73 chrX 164196873 164197296 -12776844 + L2 LINE L2 2836 3255 -17 22 0 0 0 chrX 164197623 164197645 -12776495 + AT_rich Low_complexity Low_complexity 1 22 0 183 232 0 0 chrX 164198803 164198859 -12775281 + GA-rich Low_complexity Low_complexity 1 56 0 215 250 0 0 chrX 164199387 164199431 -12774709 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 567 349 59 57 chrX 164200491 164200825 -12773315 - L2 LINE L2 0 3272 2940 252 0 0 0 chrX 164200825 164200853 -12773287 + (TG)n Simple_repeat Simple_repeat 2 29 0 567 349 59 57 chrX 164200853 164201255 -12772885 - L2 LINE L2 -332 2940 2533 241 307 0 27 chrX 164201280 164201355 -12772785 + L2 LINE L2 3241 3313 0 236 316 90 15 chrX 164201380 164201513 -12772627 - L2 LINE L2 -1137 2177 2035 181 302 0 16 chrX 164201515 164201578 -12772562 - L2 LINE L2 -1480 1834 1773 1847 197 62 58 chrX 164201760 164201839 -12772301 + MLT1D LTR MaLR 1 78 -427 1835 214 0 8 chrX 164201839 164202203 -12771937 + MLT1A1 LTR MaLR 3 363 -2 1847 197 62 58 chrX 164202203 164202626 -12771514 + MLT1D LTR MaLR 78 505 0 461 343 27 14 chrX 164202966 164203112 -12771028 + L2 LINE L2 3125 3272 0 287 296 98 30 chrX 164203237 164203369 -12770771 - L2 LINE L2 -2 3311 3171 2240 131 19 25 chrX 164203515 164203881 -12770259 + THE1B LTR MaLR 1 364 0 222 271 0 0 chrX 164203968 164204016 -12770124 - L2 LINE L2 -12 3260 3213 303 28 0 0 chrX 164204023 164204059 -12770081 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 228 67 0 0 chrX 164204066 164204096 -12770044 + (TTCCC)n Simple_repeat Simple_repeat 2 31 0 464 254 51 0 chrX 164204162 164204280 -12769860 - MIR SINE MIR -107 155 32 383 130 0 109 chrX 164205702 164205794 -12768346 + L1MA9 LINE L1 6231 6312 0 197 250 0 0 chrX 164207164 164207208 -12766932 - MIR3 SINE MIR 0 208 165 694 221 25 12 chrX 164207869 164208032 -12766108 + MER58B DNA MER1_type 177 341 0 240 250 18 18 chrX 164208089 164208145 -12765995 + MER5A DNA MER1_type 64 119 -70 698 358 72 24 chrX 164209193 164209607 -12764533 + L3 LINE CR1 1091 1524 -53 278 315 36 63 chrX 164209739 164209850 -12764290 + L2 LINE L2 3163 3270 -2 437 0 19 0 chrX 164209940 164209993 -12764147 + (TG)n Simple_repeat Simple_repeat 1 54 0 358 313 35 0 chrX 164210148 164210263 -12763877 + L2 LINE L2 3195 3313 0 204 309 0 0 chrX 164210396 164210451 -12763689 - L3 LINE CR1 -353 1224 1170 * 511 314 13 0 chrX 164210445 164210601 -12763539 + MIR SINE MIR 54 211 -51 423 281 228 6 chrX 164210657 164210838 -12763302 + MIR SINE MIR 39 260 -2 671 306 32 14 chrX 164210872 164211091 -12763049 - L3 LINE CR1 -425 1152 930 2015 92 29 29 chrX 164211151 164211467 -12762673 - AluY SINE Alu 0 316 1 1045 231 84 4 chrX 164211999 164212237 -12761903 + MIR SINE MIR 6 262 0 1607 268 49 13 chrX 164212331 164213127 -12761013 + L2 LINE L2 2490 3310 -3 625 294 28 0 chrX 164214343 164214520 -12759620 + MIR SINE MIR 62 243 -19 2110 142 0 22 chrX 164214730 164215047 -12759093 + AluSx SINE Alu 3 312 0 7802 178 28 30 chrX 164215534 164217206 -12756934 + MER52A LTR ERV1 1 1755 0 2509 84 0 0 chrX 164218312 164218623 -12755517 - AluY SINE Alu 0 311 1 365 291 38 54 chrX 164218714 164219030 -12755110 - L1ME4a LINE L1 -47 6074 5764 404 238 190 22 chrX 164220558 164220827 -12753313 + L1ME4a LINE L1 5582 5895 -226 303 28 0 0 chrX 164220845 164220881 -12753259 + (TG)n Simple_repeat Simple_repeat 2 37 0 492 289 67 21 chrX 164221402 164221596 -12752544 + MIR SINE MIR 60 262 0 185 217 0 22 chrX 164221575 164221621 -12752519 - MIR SINE MIR -94 168 124 * 296 314 63 34 chrX 164221702 164221941 -12752199 + MLT1-int LTR MaLR 290 535 -836 2117 137 127 3 chrX 164221941 164222320 -12751820 + MSTB LTR MaLR 1 426 0 2436 82 0 0 chrX 164222894 164223199 -12750941 + AluY SINE Alu 1 305 -6 1375 279 90 8 chrX 164223200 164223698 -12750442 + MLT1H1 LTR MaLR 17 555 0 383 257 71 36 chrX 164224476 164224616 -12749524 - MIR3 SINE MIR -26 182 38 2670 126 19 19 chrX 164224772 164225200 -12748940 - MSTC LTR MaLR 0 428 1 251 274 94 65 chrX 164225548 164225748 -12748392 + MIR SINE MIR 1 202 -6 189 94 0 0 chrX 164226002 164226034 -12748106 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chrX 164226156 164226178 -12747962 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chrX 164226506 164226559 -12747581 + AT_rich Low_complexity Low_complexity 1 53 0 328 371 0 0 chrX 164226716 164226813 -12747327 - L2 LINE L2 -1 3271 3175 242 291 99 57 chrX 164226958 164227099 -12747041 + MIR SINE MIR 49 195 -67 2709 29 0 0 chrX 164228046 164228357 -12745783 + AluYb8 SINE Alu 1 311 -7 2012 111 0 49 chrX 164229596 164229923 -12744217 - AluSx SINE Alu 0 312 1 2274 165 50 18 chrX 164229963 164230042 -12744098 + LOR1b LTR ERV1 5 80 -381 1773 79 136 57 chrX 164230042 164230322 -12743818 - AluSc SINE Alu -7 302 1 2274 165 50 18 chrX 164230322 164230685 -12743455 + LOR1b LTR ERV1 80 461 0 3457 117 93 117 chrX 164231647 164233035 -12741105 - pTR5 LTR ERV1 0 1600 6 186 301 57 95 chrX 164233570 164233832 -12740308 - L2 LINE L2 -213 3059 2808 381 294 0 11 chrX 164235273 164235365 -12738775 + MIR SINE MIR 49 139 -123 303 306 157 0 chrX 164235626 164235747 -12738393 - MIR SINE MIR -1 261 122 183 308 0 0 chrX 164236129 164236181 -12737959 + L2 LINE L2 3213 3264 -8 5445 194 52 30 chrX 164236725 164238143 -12735997 - Charlie1a DNA MER1_type -1 1454 7 201 352 19 88 chrX 164238147 164238306 -12735834 - MER5A DNA MER1_type -32 157 10 441 0 0 0 chrX 164240840 164240889 -12733251 + (CA)n Simple_repeat Simple_repeat 1 49 0 2225 95 0 0 chrX 164240970 164241274 -12732866 - AluY SINE Alu 0 304 1 23646 154 20 22 chrX 164241461 164244885 -12729255 + L1P3 LINE L1 120 3550 -2919 2298 59 7 3 chrX 164244885 164245172 -12728968 + AluY SINE Alu 1 288 -23 23646 154 20 22 chrX 164245172 164246245 -12727895 + L1P3 LINE L1 3550 4624 -1845 2305 106 0 3 chrX 164246245 164246548 -12727592 + AluSg SINE Alu 1 302 -8 23646 154 20 22 chrX 164246548 164247649 -12726491 + L1P3 LINE L1 4624 5764 -705 1976 77 0 0 chrX 164297649 164297895 -12676245 + AluY SINE Alu 59 304 -7 1555 279 90 8 chrX 164297896 164298394 -12675746 + MLT1H1 LTR MaLR 17 555 0 367 257 71 36 chrX 164299172 164299312 -12674828 - MIR3 SINE MIR -26 182 38 2879 126 19 19 chrX 164299468 164299896 -12674244 - MSTC LTR MaLR 0 428 1 243 274 94 65 chrX 164300244 164300444 -12673696 + MIR SINE MIR 1 202 -6 189 94 0 0 chrX 164300698 164300730 -12673410 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chrX 164300852 164300874 -12673266 + AT_rich Low_complexity Low_complexity 1 22 0 32 57 0 0 chrX 164301202 164301255 -12672885 + AT_rich Low_complexity Low_complexity 1 53 0 318 371 0 0 chrX 164301412 164301509 -12672631 - L2 LINE L2 -1 3271 3175 233 291 99 57 chrX 164301654 164301795 -12672345 + MIR SINE MIR 49 195 -67 2660 29 7 0 chrX 164302742 164303051 -12671089 + AluYb8 SINE Alu 1 311 -7 1982 115 0 49 chrX 164304290 164304616 -12669524 - AluSx SINE Alu 0 312 1 2483 167 50 18 chrX 164304656 164304735 -12669405 + LOR1b LTR ERV1 5 80 -381 1773 79 136 57 chrX 164304735 164305015 -12669125 - AluSc SINE Alu -7 302 1 2483 167 50 18 chrX 164305015 164305378 -12668762 + LOR1b LTR ERV1 80 461 0 3802 115 94 123 chrX 164306340 164307731 -12666409 - pTR5 LTR ERV1 0 1641 6 381 294 0 11 chrX 164309969 164310061 -12664079 + MIR SINE MIR 49 139 -123 303 306 157 0 chrX 164310322 164310443 -12663697 - MIR SINE MIR -1 261 122 183 308 0 0 chrX 164310825 164310877 -12663263 + L2 LINE L2 3213 3264 -8 5458 192 52 30 chrX 164311422 164312840 -12661300 - Charlie1a DNA MER1_type -1 1454 7 201 352 19 88 chrX 164312844 164313003 -12661137 - MER5A DNA MER1_type -32 157 10 423 0 0 0 chrX 164315537 164315584 -12658556 + (CA)n Simple_repeat Simple_repeat 1 47 0 2225 95 0 0 chrX 164315665 164315969 -12658171 - AluY SINE Alu 0 304 1 23665 150 19 20 chrX 164316156 164319580 -12654560 + L1PA10 LINE L1 120 3544 -2939 2298 59 7 3 chrX 164319580 164319867 -12654273 + AluY SINE Alu 1 288 -23 23665 150 19 20 chrX 164319867 164320940 -12653200 + L1PA10 LINE L1 3544 4616 -1867 2305 106 0 3 chrX 164320940 164321243 -12652897 + AluSg SINE Alu 1 302 -8 23665 150 19 20 chrX 164321243 164323053 -12651087 + L1PA10 LINE L1 4616 6483 0 2425 65 0 3 chrX 164323944 164324238 -12649902 - AluY SINE Alu -18 293 1 180 387 0 13 chrX 164324644 164324719 -12649421 + MIR3 SINE MIR 13 86 -122 450 263 0 10 chrX 164324945 164325044 -12649096 + L2 LINE L2 3197 3294 -19 1458 170 65 78 chrX 164325444 164325655 -12648485 - MLT1A1 LTR MaLR 0 365 159 1718 188 0 10 chrX 164325655 164325986 -12648154 - AluJb SINE Alu 0 328 1 1458 170 65 78 chrX 164325986 164326143 -12647997 - MLT1A1 LTR MaLR -206 159 1 203 139 23 0 chrX 164326347 164326358 -12647782 + GA-rich Low_complexity Low_complexity 3 12 -34 2190 97 0 30 chrX 164326358 164326658 -12647482 + AluSc SINE Alu 1 291 -18 203 139 23 0 chrX 164326658 164326689 -12647451 + GA-rich Low_complexity Low_complexity 12 46 0 507 349 73 14 chrX 164326690 164326908 -12647232 - MIR SINE MIR 0 262 32 31 44 0 0 chrX 164327408 164327453 -12646687 + AT_rich Low_complexity Low_complexity 1 45 0 330 148 33 0 chrX 164328160 164328221 -12645919 - MER58 DNA MER1_type -1 2419 2357 866 237 69 8 chrX 164328517 164328762 -12645378 - MER58 DNA MER1_type -81 260 1 2478 73 0 0 chrX 164329330 164329632 -12644508 - AluY SINE Alu -9 302 1 362 298 164 12 chrX 164329641 164329812 -12644328 - MIR SINE MIR -13 249 53 212 0 0 35 chrX 164330007 164330036 -12644104 + (TCC)n Simple_repeat Simple_repeat 3 30 0 192 40 0 0 chrX 164330039 164330064 -12644076 + (TC)n Simple_repeat Simple_repeat 2 26 0 851 267 35 12 chrX 164330611 164330866 -12643274 + MIR SINE MIR 2 262 0 432 296 101 35 chrX 164331133 164331332 -12642808 + MIR SINE MIR 41 252 -10 240 35 0 0 chrX 164331338 164331367 -12642773 + (CAT)n Simple_repeat Simple_repeat 2 30 0 441 212 133 9 chrX 164331377 164331490 -12642650 - MIR SINE MIR -64 144 18 977 148 72 158 chrX 164331496 164331901 -12642239 - LTR25 LTR ERV1 -10 784 415 348 248 48 60 chrX 164331949 164332171 -12641969 - MER61E LTR ERV1 -484 85 11 2269 110 0 22 chrX 164333080 164333397 -12640743 - AluSx SINE Alu -2 310 1 494 224 184 8 chrX 164334845 164334970 -12639170 - MER5A DNA MER1_type -29 160 14 2469 70 0 3 chrX 164335145 164335447 -12638693 - AluY SINE Alu -9 302 2 295 302 66 36 chrX 164335781 164335949 -12638191 + MIR3 SINE MIR 11 184 -58 720 262 58 0 chrX 164335966 164336157 -12637983 - L2 LINE L2 -644 2670 2469 637 311 19 113 chrX 164336792 164337325 -12636815 - L2 LINE L2 -9 3263 2770 766 274 90 0 chrX 164337330 164337564 -12636576 - MIR SINE MIR 0 262 8 1678 300 16 22 chrX 164337602 164337747 -12636393 + MLT1H1 LTR MaLR 7 151 -404 7483 29 2 0 chrX 164337747 164339072 -12635068 - L1PA4 LINE L1 -8 6147 4821 1678 300 16 22 chrX 164339072 164339470 -12634670 + MLT1H1 LTR MaLR 151 547 -8 219 134 10 82 chrX 164340440 164340537 -12633603 + CT-rich Low_complexity Low_complexity 4 93 0 347 200 0 0 chrX 164341011 164341071 -12633069 + MIR SINE MIR 84 143 -65 397 269 121 0 chrX 164341384 164341525 -12632615 + MIR SINE MIR 105 262 0 338 316 68 8 chrX 164342740 164342857 -12631283 - L2 LINE L2 0 3272 3149 272 240 135 0 chrX 164343901 164344005 -12630135 + MIR SINE MIR 118 235 -27 333 0 0 0 chrX 164344304 164344341 -12629799 + (CA)n Simple_repeat Simple_repeat 1 37 0 210 306 0 0 chrX 164344565 164344689 -12629451 + (TA)n Simple_repeat Simple_repeat 1 124 0 2223 73 59 0 chrX 164348473 164348759 -12625381 + AluSp SINE Alu 1 303 -10 282 29 0 0 chrX 164349473 164349508 -12624632 + (TG)n Simple_repeat Simple_repeat 2 36 0 1418 93 5 23 chrX 164349525 164349740 -12624400 - L1PB1 LINE L1 -3 6148 5938 7730 168 43 17 chrX 164349740 164350194 -12623946 - L1PBa LINE L1 -3267 3595 3155 1805 124 0 38 chrX 164350194 164350460 -12623680 - AluSx SINE Alu -16 296 41 7730 168 43 17 chrX 164350460 164354425 -12619715 - L1PBa LINE L1 -3707 3155 8 761 115 0 0 chrX 164355535 164355648 -12618492 - AluSq/x SINE Alu -200 113 1 233 373 0 0 chrX 164356361 164356428 -12617712 - L2 LINE L2 -52 3220 3154 1159 249 7 75 chrX 164356611 164357052 -12617088 + MLT2B1 LTR ERVL 4 311 -103 7388 139 21 16 chrX 164357491 164357832 -12616308 - L1PA13 LINE L1 0 6163 5825 2550 120 5 5 chrX 164357832 164358207 -12615933 + THE1C LTR MaLR 1 375 0 7388 139 21 16 chrX 164358207 164359994 -12614146 - L1PA13 LINE L1 -338 5825 4030 2140 139 0 0 chrX 164360898 164361222 -12612918 - L1MA6 LINE L1 -139 6161 5838 234 94 0 0 chrX 164361217 164361249 -12612891 + L1MA6 LINE L1 6252 6283 -17 * 402 172 30 0 chrX 164362176 164362275 -12611865 + (TA)n Simple_repeat Simple_repeat 1 102 0 230 315 0 0 chrX 164362278 164362367 -12611773 - L1MC4 LINE L1 -1339 6703 6615 346 242 16 8 chrX 164362368 164362492 -12611648 + (CATATA)n Simple_repeat Simple_repeat 6 130 0 287 217 17 0 chrX 164362636 164362696 -12611444 + MER94 DNA DNA 19 79 -55 286 399 17 6 chrX 164362793 164362971 -12611169 - L2 LINE L2 -206 3066 2887 248 255 0 43 chrX 164363760 164363854 -12610286 - L1MC4 LINE L1 -1336 6706 6617 724 45 33 59 chrX 164363855 164364378 -12609762 + (TA)n Simple_repeat Simple_repeat 1 509 0 2146 110 0 0 chrX 164364383 164364665 -12609475 - AluSq SINE Alu -31 282 1 20149 179 25 14 chrX 164364995 164370089 -12604051 + L1M1 LINE L1 12 5166 -2399 25611 146 13 15 chrX 164370093 164371319 -12602821 + L1PA8A LINE L1 3 1230 -5216 195 100 0 0 chrX 164371319 164371349 -12602791 + (CAA)n Simple_repeat Simple_repeat 1 30 0 25611 146 13 15 chrX 164371349 164371559 -12602581 + L1PA8A LINE L1 1230 1439 -5007 2161 89 17 20 chrX 164371559 164371861 -12602279 + AluSc SINE Alu 1 301 -8 25611 146 13 15 chrX 164371861 164376808 -12597332 + L1PA8A LINE L1 1439 6441 -5 281 282 46 46 chrX 164378468 164378599 -12595541 + LTR24-int LTR ERV1 3302 3432 -4967 319 304 9 15 chrX 164379769 164379910 -12594230 + LTR24-int LTR ERV1 3989 4815 -2941 374 370 27 31 chrX 164380468 164380882 -12593258 + LTR24-int LTR ERV1 2142 2553 -2094 21 36 0 0 chrX 164380910 164380938 -12593202 + AT_rich Low_complexity Low_complexity 1 28 0 617 338 60 34 chrX 164381796 164382293 -12591847 + LTR24-int LTR ERV1 6014 6523 -599 300 275 12 12 chrX 164382485 164382565 -12591575 + Charlie1a DNA MER1_type 1 80 -1375 504 275 154 12 chrX 164382714 164382961 -12591179 + Charlie1a DNA MER1_type 85 366 -1089 10249 202 28 89 chrX 164382966 164385454 -12588686 - L1PA16 LINE L1 -2 7602 4964 507 17 0 0 chrX 164385454 164385514 -12588626 + (TG)n Simple_repeat Simple_repeat 2 61 0 10249 202 28 89 chrX 164385514 164386705 -12587435 - L1PA16 LINE L1 -2640 4964 4422 360 64 0 0 chrX 164386705 164386752 -12587388 + (TG)n Simple_repeat Simple_repeat 2 48 0 10249 202 28 89 chrX 164386752 164388291 -12585849 - L1PA16 LINE L1 -3182 4422 2791 6701 133 11 10 chrX 164388307 164389880 -12584260 - L1MA2 LINE L1 -5 7718 6143 * 18479 184 37 17 chrX 164389877 164394735 -12579405 - L1MA2 LINE L1 -2507 5058 93 402 21 0 0 chrX 164394735 164394782 -12579358 + (TG)n Simple_repeat Simple_repeat 2 48 0 18479 184 37 17 chrX 164394782 164394870 -12579270 - L1MA2 LINE L1 -7472 93 8 1289 280 32 124 chrX 164394864 164395519 -12578621 - L1PA16 LINE L1 -4784 2793 2203 * 311 268 0 63 chrX 164396209 164396336 -12577804 - L1PA16 LINE L1 -5267 2307 2189 847 328 104 39 chrX 164396518 164396978 -12577162 - L1PA13 LINE L1 -6355 494 5 539 199 44 15 chrX 164397464 164397600 -12576540 + LTR24-int LTR ERV1 4984 5123 0 2182 179 34 45 chrX 164397617 164398085 -12576055 + LTR24 LTR ERV1 5 467 0 2621 166 17 15 chrX 164400520 164401043 -12573097 - L1MA9 LINE L1 -7 6305 5782 196 75 25 25 chrX 164401043 164401083 -12573057 + (TA)n Simple_repeat Simple_repeat 2 41 0 6300 204 38 42 chrX 164401135 164402972 -12571168 - L1MA9 LINE L1 -519 5793 3951 2243 119 0 0 chrX 164402972 164403283 -12570857 - AluY SINE Alu 0 311 1 6300 204 38 42 chrX 164403283 164403512 -12570628 - L1MA9 LINE L1 -2361 3951 3732 2135 104 7 24 chrX 164403512 164403810 -12570330 - AluSq SINE Alu -20 293 1 6300 204 38 42 chrX 164403810 164403894 -12570246 - L1MA9 LINE L1 -2580 3732 3649 233 208 0 0 chrX 164403870 164403923 -12570217 - L1MA9 LINE L1 -3549 2597 2545 * 7309 228 38 31 chrX 164403932 164403981 -12570159 - MSTD-int LTR MaLR 0 1735 1688 6506 161 41 2 chrX 164403981 164405164 -12568976 - Tigger3b DNA MER2_type 0 1231 2 7309 228 38 31 chrX 164405164 164406837 -12567303 - MSTD-int LTR MaLR -47 1688 2 1903 213 34 5 chrX 164406839 164407224 -12566916 - MSTD LTR MaLR 0 396 1 300 212 15 0 chrX 164407249 164407315 -12566825 - L1M4 LINE L1 -1195 4951 4885 3624 175 25 90 chrX 164407325 164408296 -12565844 + L1MA9 LINE L1 5394 6301 -11 1319 222 43 9 chrX 164408297 164408644 -12565496 - L1M4 LINE L1 -1239 4907 4549 250 239 15 0 chrX 164408701 164408768 -12565372 - L1ME LINE L1 -5448 757 690 1815 241 64 22 chrX 164408837 164409290 -12564850 + MER70A LTR ERVL 1 472 0 586 338 31 7 chrX 164409376 164409666 -12564474 - L1ME LINE L1 -6064 332 36 3061 125 14 10 chrX 164410153 164410640 -12563500 + L1PA15 LINE L1 5671 6159 -6 494 258 42 63 chrX 164410675 164411105 -12563035 + L1MC4 LINE L1 6244 7984 -58 445 155 0 19 chrX 164412525 164412628 -12561512 - Charlie5 DNA MER1_type -126 2486 2386 669 324 77 15 chrX 164412683 164413088 -12561052 + L1ME1 LINE L1 17 446 -5977 427 203 157 12 chrX 164413140 164413342 -12560798 + L1ME1 LINE L1 2854 3137 -3942 3581 248 68 63 chrX 164413368 164413887 -12560253 + L1ME1 LINE L1 3375 3890 -3051 5560 117 27 5 chrX 164413887 164414944 -12559196 + L1PA15 LINE L1 5081 6164 -1 3581 248 68 63 chrX 164414944 164416607 -12557533 + L1ME1 LINE L1 3890 5569 -1372 2337 239 97 32 chrX 164416643 164417771 -12556369 + L1ME1 LINE L1 5759 6961 0 520 243 158 13 chrX 164417773 164417925 -12556215 + MER5A DNA MER1_type 16 189 0 1512 222 43 120 chrX 164418527 164419127 -12555013 - MLT2B3 LTR ERVL 0 554 1 35 54 0 0 chrX 164422162 164422218 -12551922 + AT_rich Low_complexity Low_complexity 1 56 0 188 313 0 0 chrX 164422365 164422413 -12551727 - L2 LINE L2 -2 3311 3264 198 296 157 35 chrX 164422787 164422902 -12551238 + L2 LINE L2 3134 3262 -10 727 292 117 87 chrX 164423249 164423345 -12550795 - L3 LINE CR1 -1 1576 1484 2234 98 3 0 chrX 164423345 164423630 -12550510 - AluSp SINE Alu -18 295 10 727 292 117 87 chrX 164423630 164424074 -12550066 - L3 LINE CR1 -93 1484 1020 567 327 184 38 chrX 164424076 164424740 -12549400 - L3 LINE CR1 -710 867 107 1413 264 30 28 chrX 164427177 164427685 -12546455 - HAL1b LINE L1 -588 760 252 21 0 0 0 chrX 164428055 164428076 -12546064 + AT_rich Low_complexity Low_complexity 1 21 0 400 178 41 0 chrX 164428473 164428546 -12545594 + Tigger1 DNA MER2_type 1 76 -2342 3884 206 13 2 chrX 164428546 164429415 -12544725 - L1PB4 LINE L1 -1065 5081 4204 5145 159 11 13 chrX 164429433 164429694 -12544446 + L1PB4 LINE L1 5068 5328 -828 2209 71 10 0 chrX 164429694 164429987 -12544153 + L1PA13 LINE L1 5862 6159 -4 5145 159 11 13 chrX 164429987 164430812 -12543328 + L1PB4 LINE L1 5328 6156 0 1401 181 19 22 chrX 164430822 164431093 -12543047 + Tigger1 DNA MER2_type 66 335 -2083 5296 134 23 18 chrX 164431101 164431972 -12542168 + Tigger1 DNA MER2_type 589 1463 -955 7003 54 1 1 chrX 164432751 164434190 -12539950 - L1PA7 LINE L1 -1 6153 4708 3989 79 7 7 chrX 164434190 164434745 -12539395 + L1PA7 LINE L1 4143 4697 -1449 437 123 27 0 chrX 164436611 164436684 -12537456 - MER116 DNA Mariner 0 80 6 497 231 154 37 chrX 164437959 164438232 -12535908 - L1ME4a LINE L1 -1 6120 5816 231 250 8 125 chrX 164438936 164439056 -12535084 - MIR SINE MIR -80 182 77 244 324 38 38 chrX 164439407 164439645 -12534495 - HAL1 LINE L1 -849 1658 1421 1003 275 4 0 chrX 164440452 164440703 -12533437 - MIR SINE MIR -10 252 1 183 129 0 0 chrX 164440751 164440782 -12533358 + (TG)n Simple_repeat Simple_repeat 2 32 0 1998 201 40 20 chrX 164441235 164441688 -12532452 + MLT1C LTR MaLR 2 463 -4 1826 189 59 33 chrX 164442456 164442984 -12531156 - MLT2A2 LTR ERVL 0 554 3 1973 47 0 4 chrX 164444144 164444378 -12529762 + AluY SINE Alu 64 296 -15 255 321 150 7 chrX 164444680 164444820 -12529320 - MIR SINE MIR -99 163 4 405 349 69 14 chrX 164447514 164447732 -12526408 - MIR SINE MIR -29 233 4 233 331 72 36 chrX 164447963 164448102 -12526038 + MER117 DNA MER1_type 38 181 -16 1915 191 20 6 chrX 164448811 164449171 -12524969 - MLT1A1 LTR MaLR 0 428 1 1541 264 52 52 chrX 164449228 164449770 -12524370 + L1PA13 LINE L1 1145 1686 -5101 334 151 0 0 chrX 164449777 164449830 -12524310 - THE1B LTR MaLR 0 364 312 1161 153 5 19 chrX 164450090 164450305 -12523835 + L1PA15 LINE L1 5952 6163 -2 353 342 6 25 chrX 164450398 164450556 -12523584 + L2 LINE L2 3159 3313 0 23 0 0 0 chrX 164450706 164450729 -12523411 + AT_rich Low_complexity Low_complexity 1 23 0 2651 30 0 0 chrX 164450808 164451110 -12523030 - AluY SINE Alu -9 302 1 238 107 36 0 chrX 164451739 164451795 -12522345 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 245 276 92 20 chrX 164453171 164453269 -12520871 + MIR SINE MIR 66 170 -92 193 360 36 18 chrX 164453354 164453465 -12520675 - MIR SINE MIR -147 115 3 275 327 36 18 chrX 164453616 164453726 -12520414 + L2 LINE L2 3156 3267 -5 237 260 67 48 chrX 164455337 164455441 -12518699 - MIR SINE MIR -44 218 113 1279 162 6 95 chrX 164456381 164456774 -12517366 - MER31B LTR ERV1 0 466 1 1222 262 50 45 chrX 164456918 164457383 -12516757 - MER110A LTR ERV1 0 468 2 396 298 15 71 chrX 164457513 164457725 -12516415 + MIR3 SINE MIR 1 203 -5 590 144 61 23 chrX 164657925 164658057 -12316083 + L1MA8 LINE L1 6154 6290 -1 258 176 0 0 chrX 164658326 164658377 -12315763 + (ATG)n Simple_repeat Simple_repeat 3 53 0 279 71 0 0 chrX 164658706 164658748 -12315392 + (TC)n Simple_repeat Simple_repeat 2 43 0 243 0 0 0 chrX 164658751 164658778 -12315362 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chrX 164659310 164659338 -12314802 + AT_rich Low_complexity Low_complexity 1 28 0 390 284 107 20 chrX 164659857 164660054 -12314086 - Charlie8 DNA MER1_type -2177 240 27 483 314 54 25 chrX 164660294 164660498 -12313642 + MIR SINE MIR 53 262 0 1193 266 30 35 chrX 164660650 164661109 -12313031 + L1ME2 LINE L1 5699 6155 -9 4973 107 24 14 chrX 164661534 164662292 -12311848 + L1PA16 LINE L1 5399 6163 -3 2069 130 31 0 chrX 164662793 164663146 -12310994 + L1MA5 LINE L1 5935 6298 -2 4793 254 65 12 chrX 164663313 164664027 -12310113 + L1M4 LINE L1 16 690 -5852 495 33 0 0 chrX 164664027 164664088 -12310052 + (CA)n Simple_repeat Simple_repeat 2 62 0 315 0 0 0 chrX 164664087 164664122 -12310018 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 4793 254 65 12 chrX 164664088 164664782 -12309358 + L1M4 LINE L1 690 1464 -5078 4477 232 50 28 chrX 164664765 164665257 -12308883 + L1M4 LINE L1 3936 4416 -2228 * 2417 74 0 0 chrX 164665257 164665556 -12308584 + AluSg SINE Alu 1 299 -11 4477 232 50 28 chrX 164665556 164666455 -12307685 + L1M4 LINE L1 4416 5358 -1286 630 112 19 10 chrX 164666463 164666578 -12307562 + L1MA4 LINE L1 6110 6214 -86 423 183 0 12 chrX 164666566 164666648 -12307492 + L1M4 LINE L1 5345 5425 -1219 * 418 104 9 66 chrX 164666642 164666748 -12307392 + L1M LINE L1 5789 5888 -756 * 21 0 0 0 chrX 164669419 164669440 -12304700 + AT_rich Low_complexity Low_complexity 1 21 0 2210 192 103 2 chrX 164671153 164671607 -12302533 + MLT1D LTR MaLR 6 505 0 231 325 26 18 chrX 164672305 164672419 -12301721 + MIR3 SINE MIR 85 199 -9 776 239 58 10 chrX 164672656 164672861 -12301279 - MER58C DNA MER1_type 0 215 1 336 200 5 7 chrX 164673704 164673777 -12300363 + MLT1D LTR MaLR 5 65 -440 371 361 16 0 chrX 164674702 164674824 -12299316 + MIR3 SINE MIR 57 180 -28 435 38 0 0 chrX 164675094 164675147 -12298993 + (TA)n Simple_repeat Simple_repeat 2 54 0 240 35 0 0 chrX 164675953 164675982 -12298158 + (T)n Simple_repeat Simple_repeat 1 29 0 314 347 54 42 chrX 164676447 164676614 -12297526 - MIR3 SINE MIR -23 185 17 2443 226 47 43 chrX 164676817 164677542 -12296598 + MER97c DNA MER1_type? 8 735 -355 22 0 0 0 chrX 164677636 164677658 -12296482 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chrX 164677779 164677812 -12296328 + AT_rich Low_complexity Low_complexity 1 33 0 600 211 146 0 chrX 164678439 164678610 -12295530 - L1MD3 LINE L1 -8 7987 7792 1171 113 21 0 chrX 164678673 164678859 -12295281 - L1MA3 LINE L1 -3 6302 6113 21 104 0 0 chrX 164678865 164678942 -12295198 + AT_rich Low_complexity Low_complexity 1 77 0 22 0 0 0 chrX 164679825 164679847 -12294293 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chrX 164680546 164680581 -12293559 + AT_rich Low_complexity Low_complexity 1 35 0 181 244 44 22 chrX 164680782 164680827 -12293313 + L2 LINE L2 3211 3256 -16 232 250 109 33 chrX 164682474 164682566 -12291574 + MLT1H LTR MaLR 39 137 -412 596 300 6 12 chrX 164682683 164682843 -12291297 + MLT1H LTR MaLR 98 256 -293 4827 160 26 5 chrX 164684183 164685050 -12289090 - L1MC1 LINE L1 -18 6315 5430 236 365 0 37 chrX 164685065 164685172 -12288968 - L3 LINE CR1 -5 1572 1470 2362 246 99 52 chrX 164685242 164686355 -12287785 + L2 LINE L2 2112 3270 -43 3046 50 5 0 chrX 164686359 164686743 -12287397 + L1PA8 LINE L1 5785 6170 -2 31 26 0 0 chrX 164688587 164688625 -12285515 + AT_rich Low_complexity Low_complexity 1 38 0 1093 251 67 71 chrX 164688658 164689124 -12285016 + LTR16B LTR ERVL 1 464 0 370 243 63 155 chrX 164691178 164691462 -12282678 + MIR SINE MIR 5 262 0 24 0 0 0 chrX 164691614 164691638 -12282502 + AT_rich Low_complexity Low_complexity 1 24 0 398 341 243 11 chrX 164692471 164693339 -12280801 - L2 LINE L2 -467 2847 1779 2008 138 3 0 chrX 164693415 164693721 -12280419 - AluSx SINE Alu 0 307 1 23 33 0 0 chrX 164693827 164693857 -12280283 + AT_rich Low_complexity Low_complexity 1 30 0 324 56 56 0 chrX 164693918 164693972 -12280168 - L1MA1 LINE L1 0 6302 6246 2085 240 28 19 chrX 164694395 164694821 -12279319 - MER97b DNA MER1_type? -463 590 156 14313 145 25 2 chrX 164694821 164697186 -12276954 + Tigger1 DNA MER2_type 1 2418 0 2085 240 28 19 chrX 164697186 164697301 -12276839 - MER97b DNA MER1_type? -897 156 44 189 0 0 0 chrX 164697661 164697682 -12276458 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2089 94 0 4 chrX 164697682 164697958 -12276182 - AluSc SINE Alu -32 277 3 45 83 0 0 chrX 164698113 164698221 -12275919 + AT_rich Low_complexity Low_complexity 1 108 0 288 29 0 0 chrX 164698449 164698484 -12275656 + Tigger1 DNA MER2_type 2053 2087 -331 601 306 99 9 chrX 164698587 164698819 -12275321 + MIR SINE MIR 7 259 -3 21 36 0 0 chrX 164698826 164698854 -12275286 + AT_rich Low_complexity Low_complexity 1 28 0 2162 77 10 32 chrX 164698856 164699169 -12274971 - AluSq SINE Alu -7 306 1 24 0 0 0 chrX 164699402 164699426 -12274714 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 164700253 164700281 -12273859 + AT_rich Low_complexity Low_complexity 1 28 0 1950 131 7 3 chrX 164701289 164701580 -12272560 - AluSx SINE Alu -18 294 3 1017 213 0 33 chrX 164701610 164701821 -12272319 - MER58A DNA MER1_type -2 222 19 283 239 57 11 chrX 164701888 164701976 -12272164 + MIR SINE MIR 168 259 -3 3152 300 92 23 chrX 164702767 164703558 -12270582 - L2 LINE L2 -94 3219 2484 2222 114 0 3 chrX 164703558 164703857 -12270283 + AluSx SINE Alu 1 298 -14 3152 300 92 23 chrX 164703857 164704591 -12269549 - L2 LINE L2 -829 2484 1592 2245 108 9 9 chrX 164704591 164704952 -12269188 + L1PB1 LINE L1 5804 6164 0 3152 300 92 23 chrX 164704952 164705019 -12269121 - L2 LINE L2 -1721 1592 1531 473 266 147 27 chrX 164705052 164705236 -12268904 - MIR SINE MIR -56 206 1 184 357 76 38 chrX 164705250 164705407 -12268733 - L2 LINE L2 -1808 1506 1344 277 333 73 18 chrX 164705417 164705582 -12268558 - L2 LINE L2 -1944 1370 1197 677 334 23 30 chrX 164705663 164705965 -12268175 + MLT1J LTR MaLR 209 508 -3 214 331 77 23 chrX 164706053 164706183 -12267957 - L2 LINE L2 -2099 1215 1079 * 284 352 52 28 chrX 164706175 164706388 -12267752 - L3b LINE CR1 -136 1447 1230 253 275 51 51 chrX 164706642 164706776 -12267364 + MIR SINE MIR 34 165 -43 237 303 34 22 chrX 164707482 164707571 -12266569 - L3b LINE CR1 -306 1277 1188 21 36 0 0 chrX 164707739 164707767 -12266373 + AT_rich Low_complexity Low_complexity 1 28 0 376 181 28 0 chrX 164708000 164708072 -12266068 - L1MB5 LINE L1 0 6174 6101 2826 166 13 62 chrX 164708092 164708723 -12265417 - L1MB8 LINE L1 -1 6177 5578 24 0 0 0 chrX 164709645 164709669 -12264471 + AT_rich Low_complexity Low_complexity 1 24 0 218 277 12 72 chrX 164710082 164710165 -12263975 - MER5A DNA MER1_type -95 94 17 * 390 240 0 0 chrX 164710091 164710166 -12263974 + MER5A DNA MER1_type 114 188 -1 383 360 0 15 chrX 164710204 164710340 -12263800 + MIR SINE MIR 8 141 -121 1664 139 7 48 chrX 164710428 164710722 -12263418 - AluJo SINE Alu -30 282 1 296 275 0 0 chrX 164710725 164710794 -12263346 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 164710922 164710971 -12263169 + MER66A LTR ERV1 290 338 -140 2204 108 0 9 chrX 164711498 164711814 -12262326 - AluSq SINE Alu 0 313 1 2602 51 0 0 chrX 164711923 164712234 -12261906 - AluY SINE Alu 0 311 1 22 0 0 0 chrX 164712373 164712395 -12261745 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 164712755 164712797 -12261343 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chrX 164713533 164713569 -12260571 + AT_rich Low_complexity Low_complexity 1 36 0 402 230 8 87 chrX 164713793 164713919 -12260221 - MLT1I LTR MaLR 0 409 294 900 153 0 73 chrX 164713929 164714106 -12260034 + MSTB LTR MaLR 1 164 -262 324 350 17 26 chrX 164714213 164714330 -12259810 - MER5A DNA MER1_type -3 186 71 1444 152 74 4 chrX 164714330 164714586 -12259554 + MSTB1 LTR MaLR 158 431 -1 572 289 71 26 chrX 164714593 164714859 -12259281 - MLT1I LTR MaLR -119 290 13 510 292 11 37 chrX 164715446 164715620 -12258520 - MER5A DNA MER1_type -3 186 6 599 218 48 7 chrX 164716425 164716572 -12257568 - MER92B LTR ERV1 0 636 484 256 284 165 0 chrX 164716572 164716681 -12257459 - MIR SINE MIR -35 227 101 1824 208 42 38 chrX 164716692 164717172 -12256968 - MER92B LTR ERV1 -145 491 10 246 286 218 0 chrX 164717212 164717345 -12256795 - MIR SINE MIR 0 262 101 27 0 0 0 chrX 164717817 164717844 -12256296 + AT_rich Low_complexity Low_complexity 1 27 0 744 261 70 23 chrX 164718668 164718883 -12255257 - L3 LINE CR1 -4 1573 1349 785 169 59 50 chrX 164719077 164719443 -12254697 + LTR37A LTR ERV1 1 426 0 2316 241 89 68 chrX 164719976 164720766 -12253374 + L1M4c LINE L1 916 1745 -4639 2081 109 7 0 chrX 164720766 164721042 -12253098 + AluSq SINE Alu 1 278 -35 2316 241 89 68 chrX 164721042 164721526 -12252614 + L1M4c LINE L1 1745 2217 -4167 292 240 40 0 chrX 164721527 164721602 -12252538 + LTR37A LTR ERV1 294 371 -55 614 223 160 0 chrX 164721744 164721919 -12252221 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chrX 164722120 164722142 -12251998 + AT_rich Low_complexity Low_complexity 1 22 0 212 154 0 0 chrX 164722302 164722341 -12251799 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 1151 14 0 14 chrX 164722451 164722591 -12251549 + L1PA2 LINE L1 6015 6152 -3 296 240 64 22 chrX 164722841 164722945 -12251195 - MER110A LTR ERV1 -10 458 376 1245 192 56 37 chrX 164723335 164723710 -12250430 - LTR37A LTR ERV1 -12 414 33 25 0 0 0 chrX 164724606 164724631 -12249509 + AT_rich Low_complexity Low_complexity 1 25 0 185 91 0 30 chrX 164724757 164724790 -12249350 + (TA)n Simple_repeat Simple_repeat 2 33 0 994 199 89 79 chrX 164725481 164725797 -12248343 + MLT1A1 LTR MaLR 1 319 -46 305 264 101 14 chrX 164726058 164726206 -12247934 - L1ME3A LINE L1 -222 5948 5788 2052 184 108 5 chrX 164729724 164729835 -12244305 - L1MB8 LINE L1 -21 6157 6047 1786 260 131 9 chrX 164729835 164730520 -12243620 - L1MD3 LINE L1 -1973 6022 5254 3264 64 2 18 chrX 164730523 164730978 -12243162 - LTR7 LTR ERV1 -2 448 1 2323 98 50 13 chrX 164730978 164731354 -12242786 - HERVH LTR ERV1 0 7713 7324 1148 121 106 0 chrX 164731354 164731553 -12242587 - HERVH LTR ERV1 -1894 5819 5600 1155 173 0 0 chrX 164731554 164731745 -12242395 - HERVH LTR ERV1 -2564 5149 4959 * 6490 107 14 8 chrX 164731744 164733220 -12240920 - HERVH LTR ERV1 -1818 5273 3492 884 136 27 0 chrX 164733210 164733357 -12240783 - HERVH LTR ERV1 -4423 3290 3140 * 14241 104 15 43 chrX 164733351 164736173 -12237967 - HERVH LTR ERV1 -4726 2987 1 3284 66 2 18 chrX 164736175 164736630 -12237510 - LTR7 LTR ERV1 -2 448 1 1094 235 40 0 chrX 164736630 164736932 -12237208 - L1MD3 LINE L1 -889 5257 4944 560 170 9 0 chrX 164736937 164737043 -12237097 - FLAM_C SINE Alu -3 140 34 247 150 0 0 chrX 164737049 164737089 -12237051 - L1 LINE L1 -1191 4955 4916 424 219 234 7 chrX 164737125 164737262 -12236878 - MER5A DNA MER1_type -2 187 20 919 151 79 0 chrX 164737262 164737414 -12236726 - AluJ SINE Alu -11 301 138 1782 138 61 28 chrX 164737414 164737777 -12236363 - THE1C LTR MaLR 0 375 1 692 192 23 0 chrX 164737786 164737916 -12236224 - AluJ SINE Alu -169 133 1 187 259 103 0 chrX 164738597 164738655 -12235485 + MIR SINE MIR 92 155 -107 340 213 170 0 chrX 164739097 164739191 -12234949 - MLT1-int LTR MaLR -1253 118 9 21 0 0 0 chrX 164739740 164739761 -12234379 + AT_rich Low_complexity Low_complexity 1 21 0 887 164 13 13 chrX 164740634 164740793 -12233347 - AluJb SINE Alu -13 299 141 2093 142 18 24 chrX 164741159 164741498 -12232642 + MER1B DNA MER1_type 1 337 0 1922 125 0 11 chrX 164741570 164741857 -12232283 - AluSx SINE Alu -1 311 28 210 118 0 0 chrX 164741873 164741907 -12232233 + (T)n Simple_repeat Simple_repeat 1 34 0 235 258 0 0 chrX 164741907 164741969 -12232171 - AluSp SINE Alu -138 165 104 210 169 28 14 chrX 164742370 164742441 -12231699 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 164742584 164742662 -12231478 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 164742874 164742948 -12231192 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 164743041 164743147 -12230993 + MIR3 SINE MIR 95 208 0 404 288 206 33 chrX 164744182 164744383 -12229757 - L2 LINE L2 -90 3223 3058 2107 155 3 24 chrX 164744383 164744764 -12229376 - THE1C LTR MaLR -2 373 1 404 288 206 33 chrX 164744764 164744941 -12229199 - L2 LINE L2 -255 3058 2778 5596 257 44 12 chrX 164745497 164745702 -12228438 - L1MEc LINE L1 -2096 4050 3853 2050 147 0 13 chrX 164745702 164746016 -12228124 - AluSx SINE Alu -2 310 1 5596 257 44 12 chrX 164746016 164747720 -12226420 - L1MEc LINE L1 -2293 3853 2110 407 316 158 36 chrX 164749904 164750233 -12223907 + L2 LINE L2 2944 3312 -1 205 309 139 72 chrX 164750282 164750684 -12223456 - L2 LINE L2 -528 2786 2358 350 289 0 35 chrX 164750773 164750903 -12223237 - MIR SINE MIR -48 160 34 280 308 9 9 chrX 164750960 164751067 -12223073 + (TATATG)n Simple_repeat Simple_repeat 1 107 0 25 51 0 0 chrX 164751411 164751450 -12222690 + AT_rich Low_complexity Low_complexity 1 39 0 842 154 0 0 chrX 164752035 164752177 -12221963 + FRAM SINE Alu 30 171 0 199 266 51 51 chrX 164752296 164752375 -12221765 + MIR SINE MIR 111 189 -73 2222 112 6 37 chrX 164753419 164753767 -12220373 - MER1B DNA MER1_type 0 337 1 428 318 14 14 chrX 164753940 164754088 -12220052 - MIR SINE MIR -6 256 109 270 125 0 0 chrX 164754376 164754424 -12219716 + (TA)n Simple_repeat Simple_repeat 2 49 0 224 321 164 6 chrX 164755028 164755187 -12218953 - MER5A DNA MER1_type -2 187 4 666 128 48 16 chrX 164756207 164756332 -12217808 - L1MB3 LINE L1 -1 6182 6054 379 285 111 52 chrX 164757299 164757471 -12216669 - L2 LINE L2 -485 2829 2648 741 299 71 0 chrX 164757966 164758190 -12215950 + MIR SINE MIR 18 257 -5 22 0 0 0 chrX 164758191 164758213 -12215927 + AT_rich Low_complexity Low_complexity 1 22 0 244 211 0 53 chrX 164759734 164759810 -12214330 - HsTC2 DNA Tc2 -1801 97 26 234 179 0 0 chrX 164761587 164761626 -12212514 + L1ME2 LINE L1 6088 6126 -38 2285 104 7 0 chrX 164761627 164761936 -12212204 - AluSp SINE Alu -2 311 1 397 254 38 70 chrX 164762008 164762221 -12211919 + L1MC4 LINE L1 7836 8041 -1 27 29 0 0 chrX 164762249 164762283 -12211857 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chrX 164762357 164762394 -12211746 + AT_rich Low_complexity Low_complexity 1 37 0 34 72 0 0 chrX 164763669 164763738 -12210402 + AT_rich Low_complexity Low_complexity 1 69 0 2093 91 14 0 chrX 164764106 164764382 -12209758 + AluSc SINE Alu 1 280 -29 991 200 25 0 chrX 164764510 164764710 -12209430 - MER3 DNA MER1_type -4 205 1 1332 298 110 85 chrX 164765088 164765362 -12208778 + L2 LINE L2 1199 1465 -1848 1639 180 7 17 chrX 164765362 164765656 -12208484 - AluJo SINE Alu -21 291 1 1332 298 110 85 chrX 164765656 164767164 -12206976 + L2 LINE L2 1465 3056 -257 1675 162 64 3 chrX 164767512 164767839 -12206301 - MER7A DNA MER2_type -1 345 1 24 0 0 0 chrX 164768713 164768737 -12205403 + AT_rich Low_complexity Low_complexity 1 24 0 2360 86 0 6 chrX 164769089 164769402 -12204738 - AluY SINE Alu 0 311 1 2285 66 0 17 chrX 164770217 164770544 -12203596 + AluY SINE Alu 1 322 0 3927 142 3 2 chrX 164772031 164772665 -12201475 - MER41B LTR ERV1 0 635 1 3122 178 44 18 chrX 164772827 164773514 -12200626 - L1MB8 LINE L1 -10 6168 5464 1568 214 42 35 chrX 164773530 164773984 -12200156 - L1MB8 LINE L1 -933 5213 4757 233 336 35 49 chrX 164774500 164774643 -12199497 + MIR3 SINE MIR 67 207 -1 961 201 0 0 chrX 164774817 164774976 -12199164 + FRAM SINE Alu 1 151 -25 231 114 0 0 chrX 164775025 164775060 -12199080 + (TATG)n Simple_repeat Simple_repeat 2 36 0 244 355 0 0 chrX 164775175 164775268 -12198872 + MIR3 SINE MIR 107 199 -9 6243 179 16 14 chrX 164776124 164778149 -12195991 + L1PA14 LINE L1 4127 6152 -9 297 239 181 29 chrX 164778161 164778299 -12195841 + MER104 DNA Tc2 16 174 -6 196 226 189 0 chrX 164779671 164779724 -12194416 - L2 LINE L2 -5 3308 3246 180 0 0 0 chrX 164780442 164780462 -12193678 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 300 350 21 14 chrX 164780575 164780718 -12193422 + L3 LINE CR1 1397 1540 -37 30 45 0 0 chrX 164780759 164780803 -12193337 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chrX 164781111 164781143 -12192997 + AT_rich Low_complexity Low_complexity 1 32 0 461 347 68 28 chrX 164781169 164781420 -12192720 + L3 LINE CR1 1264 1524 -53 21 0 0 0 chrX 164781653 164781674 -12192466 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chrX 164782548 164782598 -12191542 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chrX 164782612 164782634 -12191506 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chrX 164782979 164783005 -12191135 + AT_rich Low_complexity Low_complexity 1 26 0 5379 91 3 0 chrX 164783488 164784227 -12189913 + L1PA8 LINE L1 5419 6159 -13 21 0 0 0 chrX 164784227 164784248 -12189892 + AT_rich Low_complexity Low_complexity 1 21 0 252 184 0 0 chrX 164784338 164784387 -12189753 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 316 350 124 5 chrX 164784800 164785017 -12189123 + MIR SINE MIR 2 244 -18 290 323 61 20 chrX 164785098 164785197 -12188943 - L2 LINE L2 -2 3270 3168 230 290 0 29 chrX 164785660 164785729 -12188411 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1816 51 0 40 chrX 164785931 164786184 -12187956 + L1PA5 LINE L1 5905 6147 -7 201 352 46 19 chrX 164786314 164786422 -12187718 - L2 LINE L2 -219 3053 2943 400 315 183 0 chrX 164786548 164786767 -12187373 - L2 LINE L2 -1146 2168 1910 458 303 29 49 chrX 164789121 164789365 -12184775 + L2 LINE L2 3072 3310 -3 2115 259 43 3 chrX 164789429 164790102 -12184038 - L1M4 LINE L1 -3092 3865 3166 1877 279 90 22 chrX 164790158 164790627 -12183513 - L1M4 LINE L1 -6256 603 89 489 34 0 0 chrX 164790627 164790686 -12183454 + (TG)n Simple_repeat Simple_repeat 2 60 0 1877 279 90 22 chrX 164790686 164790769 -12183371 - L1M4 LINE L1 -6770 89 13 14067 32 11 0 chrX 164791307 164793015 -12181125 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 164793015 164793154 -12180986 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 164793254 164793283 -12180857 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 164793537 164793838 -12180302 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 164793847 164794194 -12179946 - L1MA8 LINE L1 -1 6290 5933 23 54 0 0 chrX 164795036 164795073 -12179067 + AT_rich Low_complexity Low_complexity 1 37 0 322 217 72 12 chrX 164795263 164795346 -12178794 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 164796526 164796567 -12177573 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2554 51 0 6 chrX 164796585 164796897 -12177243 + AluY SINE Alu 1 310 -1 249 108 0 0 chrX 164797179 164797216 -12176924 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 164797216 164797566 -12176574 - L1PA8 LINE L1 -24 6148 5798 316 219 16 0 chrX 164797658 164797722 -12176418 - MER20 DNA MER1_type -154 65 1 1318 193 87 40 chrX 164798405 164798726 -12175414 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 164798727 164798779 -12175361 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 164798829 164799174 -12174966 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 164799323 164799358 -12174782 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 164800205 164800487 -12173653 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 164803366 164803576 -12170564 + L2 LINE L2 2100 2322 -992 1430 209 60 2 chrX 164804155 164804576 -12169564 - L1MCa LINE L1 -3592 2834 2375 249 119 0 0 chrX 164804576 164804618 -12169522 + (TA)n Simple_repeat Simple_repeat 1 42 0 1430 209 60 2 chrX 164804618 164804758 -12169382 - L1MCa LINE L1 -4051 2375 2245 275 70 93 0 chrX 164804767 164804810 -12169330 - L1PA6 LINE L1 -360 5794 5748 2435 73 3 28 chrX 164804811 164805167 -12168973 + L1PA6 LINE L1 5801 6147 -7 280 257 137 69 chrX 164805969 164806144 -12167996 + MIR SINE MIR 65 251 -11 1489 153 143 20 chrX 164806165 164806465 -12167675 - MER44D DNA MER2_type -1 608 2 204 40 0 0 chrX 164806469 164806494 -12167646 + (TTA)n Simple_repeat Simple_repeat 2 26 0 714 196 139 0 chrX 164806861 164807019 -12167121 + MER58A DNA MER1_type 37 216 -8 8093 20 0 0 chrX 164807019 164808105 -12166035 - L1PA3 LINE L1 -633 5522 4437 5502 10 0 0 chrX 164808102 164808720 -12165420 + L1PA3 LINE L1 5524 6141 -14 * 22 0 0 0 chrX 164808861 164808883 -12165257 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 164809604 164809631 -12164509 + AT_rich Low_complexity Low_complexity 1 27 0 14232 33 5 0 chrX 164812899 164814618 -12159522 - L1P LINE L1 -1163 4983 3257 1212 14 0 0 chrX 164814618 164814757 -12159383 + L1PA2 LINE L1 6016 6155 0 22 35 0 0 chrX 164814857 164814886 -12159254 + AT_rich Low_complexity Low_complexity 1 29 0 2237 96 3 0 chrX 164815140 164815441 -12158699 + AluSg SINE Alu 1 302 -8 1798 153 38 6 chrX 164815450 164815797 -12158343 - L1MA8 LINE L1 -1 6290 5933 22 56 0 0 chrX 164816639 164816675 -12157465 + AT_rich Low_complexity Low_complexity 1 36 0 322 217 72 12 chrX 164816865 164816948 -12157192 - L1ME LINE L1 -542 5579 5492 215 219 0 0 chrX 164818128 164818169 -12155971 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2537 52 0 7 chrX 164818187 164818497 -12155643 + AluY SINE Alu 1 308 -3 249 108 0 0 chrX 164818779 164818816 -12155324 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2843 46 3 0 chrX 164818816 164819166 -12154974 - L1PA8 LINE L1 -24 6148 5798 302 234 16 0 chrX 164819258 164819322 -12154818 - MER20 DNA MER1_type -154 65 1 1302 196 87 40 chrX 164820005 164820326 -12153814 - MER2 DNA MER2_type -6 339 4 393 58 0 0 chrX 164820327 164820379 -12153761 + (TG)n Simple_repeat Simple_repeat 1 52 0 328 330 67 26 chrX 164820429 164820774 -12153366 - HAL1b LINE L1 -679 669 311 21 57 0 0 chrX 164820923 164820958 -12153182 + AT_rich Low_complexity Low_complexity 1 35 0 303 319 35 50 chrX 164821805 164822087 -12152053 - L1MC/D LINE L1 -1965 5843 5566 214 343 81 19 chrX 164824970 164825180 -12148960 + L2 LINE L2 2100 2322 -992 255 346 45 45 chrX 164825872 164826028 -12148112 + MIR SINE MIR 57 212 -50 325 261 62 72 chrX 164826032 164826227 -12147913 + L1ME4a LINE L1 5751 5943 -178 21 36 0 0 chrX 164826641 164826669 -12147471 + AT_rich Low_complexity Low_complexity 1 28 0 243 274 0 0 chrX 164827325 164827478 -12146662 + (TA)n Simple_repeat Simple_repeat 1 153 0 2086 113 0 3 chrX 164827479 164827762 -12146378 - AluSq SINE Alu -31 282 1 529 110 0 0 chrX 164828197 164828270 -12145870 + 5S rRNA rRNA 49 121 0 369 0 0 0 chrX 164829337 164829378 -12144762 + (TG)n Simple_repeat Simple_repeat 2 42 0 241 382 34 22 chrX 164829437 164829615 -12144525 + L2 LINE L2 2479 2658 -656 277 332 109 21 chrX 164829712 164829905 -12144235 - MIR SINE MIR 0 262 53 2353 65 0 3 chrX 164829917 164830210 -12143930 + AluY SINE Alu 1 292 -19 1619 137 7 46 chrX 164830869 164831153 -12142987 - AluJo SINE Alu -39 273 1 296 275 0 0 chrX 164831156 164831225 -12142915 - MER94 DNA DNA -59 75 7 272 184 0 0 chrX 164831353 164831402 -12142738 + MER66A LTR ERV1 290 338 -140 2363 48 10 19 chrX 164831929 164832243 -12141897 - AluY SINE Alu 0 311 1 2360 86 0 6 chrX 164833059 164833372 -12140768 + AluY SINE Alu 1 311 0 210 169 28 14 chrX 164834052 164834123 -12140017 + (TA)n Simple_repeat Simple_repeat 1 72 0 219 320 39 0 chrX 164834266 164834344 -12139796 - MIR SINE MIR 0 262 182 309 216 14 0 chrX 164834566 164834640 -12139500 - LTR50 LTR ERVL -720 75 1 315 255 94 19 chrX 164834733 164834839 -12139301 + MIR3 SINE MIR 95 208 0 266 319 26 26 chrX 164836308 164836424 -12137716 - L3 LINE CR1 -107 1470 1355 23 78 0 0 chrX 164836563 164836614 -12137526 + AT_rich Low_complexity Low_complexity 1 51 0 186 309 10 62 chrX 164836717 164836814 -12137326 - MIR SINE MIR -76 186 95 212 154 0 0 chrX 164837733 164837772 -12136368 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chrX 164837932 164837954 -12136186 + AT_rich Low_complexity Low_complexity 1 22 0 614 223 160 0 chrX 164838155 164838330 -12135810 - MER3 DNA MER1_type -5 204 2 292 240 40 0 chrX 164838472 164838547 -12135593 - LTR37A LTR ERV1 -55 371 294 454 199 123 29 chrX 164838548 164838719 -12135421 - L1M4c LINE L1 -4167 2479 2293 536 316 44 12 chrX 164838762 164839012 -12135128 - L1M4c LINE L1 -4493 2153 1896 342 380 37 37 chrX 164840275 164840599 -12133541 + L2 LINE L2 2943 3266 -6 24 0 0 0 chrX 164841320 164841344 -12132796 + AT_rich Low_complexity Low_complexity 1 24 0 2374 212 21 75 chrX 164843923 164844173 -12129967 + L1 LINE L1 4543 4805 -1341 409 187 76 40 chrX 164844173 164844321 -12129819 + LTR19C LTR ERV1 39 227 -552 2374 212 21 75 chrX 164844321 164844847 -12129293 + L1 LINE L1 4805 5331 -815 256 195 23 23 chrX 164844971 164845058 -12129082 + L1MA4 LINE L1 2039 2125 -4724 4080 191 36 1 chrX 164845137 164845986 -12128154 + L1MA4 LINE L1 4565 5443 -1405 1905 136 0 37 chrX 164846689 164847013 -12127127 - AluJo SINE Alu 0 312 1 2769 265 87 5 chrX 164847371 164847472 -12126668 - L1M4c LINE L1 -5645 897 806 333 0 0 0 chrX 164847472 164847509 -12126631 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 513 32 0 0 chrX 164847508 164847571 -12126569 + (TG)n Simple_repeat Simple_repeat 2 64 0 2769 265 87 5 chrX 164847509 164848284 -12125856 - L1M4c LINE L1 -5736 806 16 1836 144 34 8 chrX 164848458 164848813 -12125327 - L1MA5 LINE L1 -2 6298 5935 5001 217 30 20 chrX 164849341 164850487 -12123653 + L1M2 LINE L1 2 1158 -5691 2508 119 18 2 chrX 164850619 164851013 -12123127 + L1PA16 LINE L1 5758 6157 -9 3718 204 32 2 chrX 164851023 164851373 -12122767 + L1MA4 LINE L1 6130 6468 -534 591 15 0 0 chrX 164851373 164851441 -12122699 + (TA)n Simple_repeat Simple_repeat 1 68 0 3718 204 32 2 chrX 164851441 164851903 -12122237 + L1MA4 LINE L1 6468 6966 -36 1263 222 48 14 chrX 164852289 164852645 -12121495 + L1MB8 LINE L1 5805 6172 -6 7944 107 8 55 chrX 164853658 164855257 -12118883 + HERVH LTR ERV1 335 2100 -5613 6952 155 22 7 chrX 164855507 164856723 -12117417 + Tigger1 DNA MER2_type 657 1891 -527 4083 165 109 35 chrX 164856829 164857875 -12116265 + L1MCa LINE L1 908 2030 -4396 286 256 13 0 chrX 164857894 164857972 -12116168 + Tigger4(Zombi) DNA MER2_type 1 79 -2652 243 307 127 44 chrX 164858200 164858656 -12115484 - HAL1 LINE L1 -395 2112 1619 22 35 0 0 chrX 164858729 164858758 -12115382 + AT_rich Low_complexity Low_complexity 1 29 0 383 257 29 91 chrX 164858963 164859173 -12114967 - MER58A DNA MER1_type -1 223 27 315 153 153 10 chrX 164859273 164859371 -12114769 + L1MA4 LINE L1 6187 6298 -2 * 1322 256 55 16 chrX 164859362 164860128 -12114012 + L1MEc LINE L1 1577 2268 -3947 831 260 144 36 chrX 164860955 164861468 -12112672 - MLT1G1 LTR MaLR 0 595 4 9094 28 3 1 chrX 164861642 164862775 -12111365 - L1P LINE L1 -2788 3358 2223 189 0 0 0 chrX 164863167 164863188 -12110952 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2089 94 0 4 chrX 164863188 164863464 -12110676 - AluSc SINE Alu -32 277 3 23 94 0 0 chrX 164863640 164863693 -12110447 + AT_rich Low_complexity Low_complexity 1 53 0 4099 139 14 5 chrX 164864108 164864772 -12109368 - L1PA16 LINE L1 -98 6068 5399 900 175 0 7 chrX 164915224 164915378 -12058762 - L1PA16 LINE L1 -1173 4973 4821 1040 141 11 16 chrX 164915380 164915565 -12058575 - L1MA6 LINE L1 -392 5908 5725 1033 298 98 39 chrX 164915630 164915930 -12058210 + L2 LINE L2 2818 3157 -156 1483 165 171 0 chrX 164915930 164916245 -12057895 - MER93b LTR ERV1 0 373 5 1033 298 98 39 chrX 164916245 164916411 -12057729 + L2 LINE L2 3157 3312 -1 21 0 0 0 chrX 164917815 164917836 -12056304 + AT_rich Low_complexity Low_complexity 1 21 0 537 233 0 0 chrX 164918101 164918217 -12055923 - L1PA8A LINE L1 0 6131 6016 259 105 0 0 chrX 164918218 164918256 -12055884 - L1PA10 LINE L1 -116 6052 6015 2390 83 6 3 chrX 164918893 164919205 -12054935 - AluSq SINE Alu 0 313 1 2258 92 0 10 chrX 164919534 164919829 -12054311 + AluSc SINE Alu 1 292 -17 2087 102 0 0 chrX 164922916 164923199 -12050941 - AluSq SINE Alu -30 283 1 256 168 104 144 chrX 164923627 164923752 -12050388 - LTR37B LTR ERV1 -326 142 23 35 41 0 0 chrX 164924651 164924700 -12049440 + AT_rich Low_complexity Low_complexity 1 49 0 2150 231 26 0 chrX 164925748 164926241 -12047899 - L1PA16 LINE L1 -1777 4369 3864 673 292 39 27 chrX 164926425 164926682 -12047458 + MIR SINE MIR 3 262 0 2345 222 20 35 chrX 164926878 164927525 -12046615 + L1ME1 LINE L1 5538 6334 0 3992 147 76 0 chrX 164927800 164927970 -12046170 + HSMAR2 DNA Mariner 1 157 -1145 2187 99 0 3 chrX 164927970 164928263 -12045877 + AluSq SINE Alu 1 292 -21 3992 147 76 0 chrX 164928263 164928793 -12045347 + HSMAR2 DNA Mariner 157 754 -548 5765 83 15 11 chrX 164928799 164929596 -12044544 + L1PA11 LINE L1 5374 6173 -1 2892 137 102 14 chrX 164929596 164930108 -12044032 + HSMAR2 DNA Mariner 744 1300 -2 21 36 0 0 chrX 164932127 164932155 -12041985 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chrX 164932443 164932472 -12041668 + AT_rich Low_complexity Low_complexity 1 29 0 330 154 15 0 chrX 164932488 164932553 -12041587 - L1PB4 LINE L1 -8 6148 6083 225 321 24 77 chrX 164934282 164934450 -12039690 - L2 LINE L2 -518 2796 2638 970 141 32 145 chrX 164934522 164934614 -12039526 + L1MB7 LINE L1 5934 6035 -149 1900 137 89 17 chrX 164934614 164934964 -12039176 - THE1C LTR MaLR 0 375 1 970 141 32 145 chrX 164934964 164935154 -12038986 + L1MB7 LINE L1 6035 6184 0 1984 177 9 0 chrX 164935973 164936318 -12037822 + MER7A DNA MER2_type 1 346 0 2292 74 37 0 chrX 164936654 164936950 -12037190 + AluSc SINE Alu 1 307 -2 232 308 15 0 chrX 164939804 164939869 -12034271 - MIR SINE MIR -147 115 50 731 277 71 9 chrX 164940099 164940323 -12033817 + MIR SINE MIR 6 243 -19 2432 193 35 21 chrX 164940493 164941068 -12033072 - L1MB8 LINE L1 0 6178 5596 218 336 46 30 chrX 164941078 164941209 -12032931 + L2 LINE L2 2620 2752 -562 274 292 0 0 chrX 164941257 164941322 -12032818 - L2 LINE L2 -2 3311 3247 180 0 0 0 chrX 164941963 164941983 -12032157 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 1279 124 16 0 chrX 164942105 164942299 -12031841 + L1PA8 LINE L1 5972 6168 -4 513 183 77 30 chrX 164942397 164942566 -12031574 + L1MC5 LINE L1 7652 7828 -133 6255 158 9 5 chrX 164942574 164943633 -12030507 - L1MC1 LINE L1 0 6333 5268 243 0 0 0 chrX 164943633 164943660 -12030480 + (TG)n Simple_repeat Simple_repeat 2 28 0 6255 158 9 5 chrX 164943660 164943673 -12030467 - L1MC1 LINE L1 -1065 5268 5257 1907 150 57 59 chrX 164943683 164943991 -12030149 - L1MA8 LINE L1 -6 6285 5977 2356 92 13 0 chrX 164943991 164944296 -12029844 - AluSc SINE Alu 0 309 1 1907 150 57 59 chrX 164944296 164944428 -12029712 - L1MA8 LINE L1 -314 5977 5846 * 2200 201 13 60 chrX 164944425 164944612 -12029528 - L1M3e LINE L1 -6523 507 313 2001 142 35 30 chrX 164944612 164944985 -12029155 - THE1C LTR MaLR 0 375 1 2200 201 13 60 chrX 164944985 164945329 -12028811 - L1M3e LINE L1 -6717 313 1 2751 249 18 19 chrX 164945331 164946122 -12028018 - L1MC1 LINE L1 -870 5276 4487 276 130 0 0 chrX 164947691 164947737 -12026403 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 225 305 0 0 chrX 164947748 164947807 -12026333 + L2 LINE L2 3203 3261 -11 410 325 40 0 chrX 164947838 164947964 -12026176 + MER91C DNA MER1_type 2 132 -8 360 341 0 16 chrX 164948026 164948152 -12025988 + MER5B DNA MER1_type 25 148 -30 225 222 0 0 chrX 164948154 164948208 -12025932 - L1MB8 LINE L1 0 6178 6125 273 75 0 0 chrX 164948454 164948494 -12025646 + (CA)n Simple_repeat Simple_repeat 1 40 0 480 291 112 8 chrX 164948494 164948679 -12025461 + MIR SINE MIR 29 232 -30 22 0 0 0 chrX 164948907 164948929 -12025211 + AT_rich Low_complexity Low_complexity 1 22 0 228 35 0 0 chrX 164949611 164949640 -12024500 + (CA)n Simple_repeat Simple_repeat 2 30 0 1526 91 0 57 chrX 164950560 164950790 -12023350 - AluY SINE Alu -6 305 89 473 40 122 0 chrX 164950808 164950822 -12023318 - AluY SINE Alu -174 137 126 207 0 0 0 chrX 164950822 164950845 -12023295 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 473 40 122 0 chrX 164950845 164950904 -12023236 - AluY SINE Alu -185 126 55 697 138 9 9 chrX 164951288 164951404 -12022736 + AluSg/x SINE Alu 174 289 -20 301 219 73 10 chrX 164952549 164952645 -12021495 + MER103 DNA DNA 64 165 -1 25 0 0 0 chrX 164953223 164953248 -12020892 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chrX 164955539 164955562 -12018578 + (A)n Simple_repeat Simple_repeat 1 23 0 223 333 16 0 chrX 164955696 164955759 -12018381 - MER5B DNA MER1_type -7 171 108 202 330 33 33 chrX 164955713 164955804 -12018336 + MER5A DNA MER1_type 36 126 -63 * 335 208 255 54 chrX 164956108 164956257 -12017883 - MER5A DNA MER1_type 0 189 11 188 302 81 58 chrX 164957121 164957207 -12016933 - L2 LINE L2 -36 3236 3149 223 312 13 0 chrX 164958268 164958345 -12015795 + MIR SINE MIR 166 243 -19 426 116 14 0 chrX 164958528 164958597 -12015543 + MER41B LTR ERV1 481 550 -85 2015 129 7 0 chrX 164959903 164960211 -12013929 + AluSx SINE Alu 1 310 0 23 33 0 0 chrX 164960733 164960763 -12013377 + AT_rich Low_complexity Low_complexity 1 30 0 1083 160 11 27 chrX 164961230 164961417 -12012723 - AluJo SINE Alu -23 289 106 899 122 0 23 chrX 164961636 164961808 -12012332 + (TCC)n Simple_repeat Simple_repeat 1 168 0 1276 199 18 53 chrX 164961808 164962090 -12012050 - AluJo SINE Alu -19 293 22 487 298 161 19 chrX 164962170 164962375 -12011765 - MIR SINE MIR 0 262 29 853 126 0 0 chrX 164963483 164963602 -12010538 - AluSg/x SINE Alu -17 293 175 203 61 30 0 chrX 164963910 164963943 -12010197 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 693 227 11 17 chrX 164964541 164964717 -12009423 - MER104 DNA Tc2 -5 175 1 251 273 61 0 chrX 164965414 164965480 -12008660 - MIR SINE MIR -2 260 191 2022 177 7 57 chrX 164965493 164965841 -12008299 - L1MD3 LINE L1 0 7995 7674 599 231 25 0 chrX 164965841 164965962 -12008178 - FLAM_A SINE Alu -9 124 1 2022 177 7 57 chrX 164965962 164966066 -12008074 - L1MD3 LINE L1 -321 7674 7566 476 250 181 0 chrX 164966066 164966226 -12007914 - MIR SINE MIR -68 194 6 193 289 0 0 chrX 164966290 164966342 -12007798 + MIR SINE MIR 120 171 -91 784 241 78 13 chrX 164967937 164968169 -12005971 + L2 LINE L2 2354 2600 -714 1335 158 4 39 chrX 164968169 164968428 -12005712 - L1MA7 LINE L1 -146 6145 5896 1578 76 0 5 chrX 164968436 164968633 -12005507 - AluSg/x SINE Alu -22 290 95 4970 96 1 26 chrX 164968633 164969360 -12004780 - L1PA13 LINE L1 -8 6155 5447 494 194 28 0 chrX 164969363 164969471 -12004669 - L1PA13 LINE L1 -1033 5113 5003 1663 67 0 0 chrX 164969810 164970050 -12004090 - AluY SINE Alu 0 341 102 1149 173 40 0 chrX 164970051 164970253 -12003887 - L1M4b LINE L1 -5679 1180 971 * 2652 233 40 51 chrX 164970251 164970934 -12003206 - L1M4b LINE L1 -6183 676 2 372 286 88 29 chrX 164971379 164971550 -12002590 + MIR SINE MIR 34 214 -48 447 323 37 56 chrX 164972224 164972637 -12001503 - L2 LINE L2 -210 3062 2659 378 0 0 0 chrX 164973367 164973409 -12000731 + (CA)n Simple_repeat Simple_repeat 2 43 0 240 191 0 0 chrX 164975521 164975563 -11998577 - MER117 DNA MER1_type -155 42 1 515 269 47 13 chrX 164977534 164977683 -11996457 - MIR SINE MIR -76 186 33 257 295 29 19 chrX 164977797 164977902 -11996238 - MIR SINE MIR -48 214 109 225 0 0 0 chrX 164980349 164980374 -11993766 + (CATTC)n Simple_repeat Simple_repeat 1 25 0 459 92 0 0 chrX 164980508 164980573 -11993567 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 216 221 58 70 chrX 164980844 164980930 -11993210 - L2 LINE L2 -500 2814 2730 2369 110 0 0 chrX 164981061 164981371 -11992769 + AluSg SINE Alu 1 310 0 2010 111 25 38 chrX 164981734 164982049 -11992091 + AluSq SINE Alu 1 311 -2 22 0 0 0 chrX 164982691 164982713 -11991427 + AT_rich Low_complexity Low_complexity 1 22 0 213 348 98 37 chrX 164983377 164983621 -11990519 - L2 LINE L2 -1188 2126 1868 207 148 0 37 chrX 164983751 164983805 -11990335 + (TTTTTG)n Simple_repeat Simple_repeat 4 55 0 1706 184 26 3 chrX 164983842 164984147 -11989993 + AluJb SINE Alu 1 312 0 1648 139 0 97 chrX 164984483 164984660 -11989480 - AluJo SINE Alu -4 298 105 902 128 7 0 chrX 164984660 164984809 -11989331 + (TTTC)n Simple_repeat Simple_repeat 2 151 0 2230 89 0 7 chrX 164984811 164985092 -11989048 - AluSp SINE Alu -32 281 3 1648 139 0 97 chrX 164985092 164985241 -11988899 - AluJo SINE Alu -198 104 1 2234 88 7 3 chrX 164988434 164988731 -11985409 - AluSq SINE Alu -15 298 1 25 65 0 0 chrX 164988884 164988930 -11985210 + AT_rich Low_complexity Low_complexity 1 46 0 702 208 57 6 chrX 164989144 164989303 -11984837 - MIR SINE MIR -25 237 71 533 274 35 97 chrX 164989390 164989729 -11984411 - MER102b DNA MER1_type -12 329 12 342 354 95 36 chrX 164990420 164990725 -11983415 + L3 LINE CR1 1110 1432 -145 2459 73 0 0 chrX 164990873 164991174 -11982966 - AluSc SINE Alu -8 301 1 1657 158 18 18 chrX 164991490 164991774 -11982366 + AluJb SINE Alu 1 284 -28 2373 88 10 0 chrX 164992132 164992439 -11981701 + AluSx SINE Alu 1 310 -2 1306 164 31 31 chrX 164992970 164993262 -11980878 - L1MA9 LINE L1 -4 6308 6017 260 200 14 0 chrX 164993470 164993540 -11980600 - LTR66 LTR ERVL -151 459 389 550 191 69 39 chrX 164996138 164996342 -11977798 + MER113 DNA MER1_type? 1 210 -311 2327 134 106 3 chrX 164996864 164997252 -11976888 - MSTA LTR MaLR 0 428 1 582 255 13 27 chrX 164997354 164997503 -11976637 - MIR SINE MIR -20 242 96 2238 101 0 40 chrX 164998214 164998540 -11975600 + AluSq SINE Alu 1 313 0 23 0 0 0 chrX 164998788 164998811 -11975329 + AT_rich Low_complexity Low_complexity 1 23 0 39 0 0 0 chrX 165000428 165000467 -11973673 + AT_rich Low_complexity Low_complexity 1 39 0 34 0 0 0 chrX 165000672 165000706 -11973434 + AT_rich Low_complexity Low_complexity 1 34 0 186 103 0 0 chrX 165002075 165002104 -11972036 + (TTG)n Simple_repeat Simple_repeat 2 30 0 526 244 169 12 chrX 165002271 165002431 -11971709 + MER5A DNA MER1_type 5 189 0 2188 95 0 3 chrX 165002607 165002917 -11971223 + AluSq SINE Alu 1 309 0 203 254 55 36 chrX 165003268 165003323 -11970817 - MIR SINE MIR -171 91 36 25 0 0 0 chrX 165003582 165003607 -11970533 + AT_rich Low_complexity Low_complexity 1 25 0 2329 97 0 0 chrX 165003670 165003970 -11970170 + AluSc SINE Alu 1 300 -9 825 281 109 42 chrX 165003970 165004355 -11969785 - MER57B LTR ERV1 -14 420 10 638 300 4 84 chrX 165004361 165004634 -11969506 + MIR SINE MIR 12 262 0 11476 146 9 8 chrX 165004807 165005392 -11968748 + L1MA3 LINE L1 3203 3786 -2519 2316 79 7 10 chrX 165005392 165005696 -11968444 + AluSq SINE Alu 1 303 -10 11476 146 9 8 chrX 165005696 165006123 -11968017 + L1MA3 LINE L1 3786 4211 -2094 2332 96 3 0 chrX 165006123 165006426 -11967714 + AluSp SINE Alu 1 304 -9 11476 146 9 8 chrX 165006426 165008507 -11965633 + L1MA3 LINE L1 4211 6298 -7 292 341 106 22 chrX 165008518 165008697 -11965443 - MLT1J LTR MaLR -92 419 226 230 333 0 0 chrX 165008781 165008850 -11965290 - MLT1J LTR MaLR -331 180 112 23 33 0 0 chrX 165010174 165010204 -11963936 + AT_rich Low_complexity Low_complexity 1 30 0 1602 254 28 74 chrX 165011696 165012134 -11962006 - L1ME3A LINE L1 -35 6135 5728 2303 75 4 0 chrX 165012134 165012439 -11961701 - AluSp SINE Alu 0 306 1 1602 254 28 74 chrX 165012439 165012578 -11961562 - L1ME3A LINE L1 -442 5728 5584 27 29 0 0 chrX 165013211 165013245 -11960895 + AT_rich Low_complexity Low_complexity 1 34 0 230 233 81 23 chrX 165014645 165014731 -11959409 - L1ME4a LINE L1 -76 6114 6024 26 64 0 0 chrX 165014782 165014829 -11959311 + AT_rich Low_complexity Low_complexity 1 47 0 623 313 123 16 chrX 165015048 165015562 -11958578 - L1ME4a LINE L1 -219 6020 5452 578 279 36 58 chrX 165015623 165015659 -11958481 - L1ME4a LINE L1 -917 5298 5263 2236 108 13 0 chrX 165015659 165015964 -11958176 - AluSx SINE Alu -3 309 1 578 279 36 58 chrX 165015964 165016289 -11957851 - L1ME4a LINE L1 -952 5263 4945 417 288 84 56 chrX 165016315 165016532 -11957608 - MLT1J2 LTR MaLR 0 450 184 2135 95 0 41 chrX 165016532 165016847 -11957293 - AluSg SINE Alu -6 304 3 417 288 84 56 chrX 165016847 165016967 -11957173 - MLT1J2 LTR MaLR -266 184 69 624 303 79 20 chrX 165017171 165017668 -11956472 - L1ME4a LINE L1 -1527 4688 4129 707 307 34 22 chrX 165017726 165018140 -11956000 - L1ME4a LINE L1 -2364 3851 3433 2184 115 6 6 chrX 165018353 165018666 -11955474 - AluSq SINE Alu 0 313 1 342 239 64 13 chrX 165018773 165019003 -11955137 - L1ME4a LINE L1 -3204 3011 2750 368 286 82 70 chrX 165019086 165019691 -11954449 - L1MEc LINE L1 -3594 2621 2046 26 0 0 0 chrX 165019858 165019884 -11954256 + AT_rich Low_complexity Low_complexity 1 26 0 242 339 129 45 chrX 165019974 165020508 -11953632 - L2 LINE L2 -568 2746 2168 197 284 64 0 chrX 165020699 165020808 -11953332 - L2 LINE L2 -1271 2043 1928 593 281 42 35 chrX 165021969 165022229 -11951911 - MIR SINE MIR 0 262 1 265 240 10 21 chrX 165022832 165022928 -11951212 + (TA)n Simple_repeat Simple_repeat 1 95 0 2732 178 46 89 chrX 165023122 165023840 -11950300 + L1MCa LINE L1 1 687 -5739 2575 185 11 12 chrX 165023844 165024402 -11949738 - L1P LINE L1 -959 5187 4631 2400 231 7 5 chrX 165024417 165025011 -11949129 + L1M4 LINE L1 3577 4171 -1975 377 229 0 12 chrX 165025011 165025094 -11949046 - Tigger5 DNA MER2_type 0 2323 2242 354 192 0 26 chrX 165025084 165025162 -11948978 + Tigger5 DNA MER2_type 2242 2317 -6 * 407 244 0 0 chrX 165025164 165025242 -11948898 - Tigger5 DNA MER2_type -2244 79 2 333 264 0 0 chrX 165025242 165025329 -11948811 + L1M4 LINE L1 4171 4257 -1889 866 212 10 26 chrX 165025364 165025591 -11948549 - MLT1D LTR MaLR -327 178 1 21 0 0 0 chrX 165025668 165025689 -11948451 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chrX 165026121 165026149 -11947991 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 351 0 0 0 chrX 165026148 165026187 -11947953 + (CA)n Simple_repeat Simple_repeat 1 39 0 1983 114 0 0 chrX 165026744 165027045 -11947095 - AluSx SINE Alu 0 324 24 1375 182 41 3 chrX 165027458 165027749 -11946391 + MER33 DNA MER1_type 1 302 -22 189 339 68 0 chrX 165028619 165028678 -11945462 + L2 LINE L2 3170 3232 -40 349 288 49 25 chrX 165029673 165029836 -11944304 + MIR SINE MIR 87 253 -9 871 215 16 0 chrX 165030972 165031158 -11942982 - MER5A DNA MER1_type 0 189 1 381 278 40 20 chrX 165031262 165031413 -11942727 + L2 LINE L2 2192 2345 -969 2158 106 0 23 chrX 165031416 165031717 -11942423 + AluSg1 SINE Alu 1 294 -15 522 225 56 6 chrX 165031788 165031948 -11942192 + L1MC4 LINE L1 7244 7411 -631 428 330 39 80 chrX 165032135 165032471 -11941669 + L2 LINE L2 2904 3225 -47 219 69 0 0 chrX 165032493 165032522 -11941618 + (TGGA)n Simple_repeat Simple_repeat 4 32 0 2388 77 3 0 chrX 165032778 165033076 -11941064 - AluSp SINE Alu -9 304 6 2628 52 0 0 chrX 165033327 165033632 -11940508 - AluY SINE Alu -6 305 1 247 294 47 12 chrX 165035383 165035468 -11938672 - MER5A DNA MER1_type 0 189 91 233 152 0 0 chrX 165035472 165035505 -11938635 + MER5A DNA MER1_type 157 189 0 541 295 22 16 chrX 165035779 165035962 -11938178 + MER46C DNA MER2_type 138 321 -17 1852 129 0 103 chrX 165035991 165036379 -11937761 + MER7A DNA MER2_type 1 346 0 4588 160 13 30 chrX 165037242 165038141 -11935999 - L1MC2 LINE L1 -10 6334 5451 550 231 71 60 chrX 165038547 165038829 -11935311 - L1MC5 LINE L1 -50 7911 7627 677 223 30 56 chrX 165038846 165039079 -11935061 - L1MC5 LINE L1 -393 7568 7342 1991 136 0 7 chrX 165039469 165039775 -11934365 - AluSq SINE Alu 0 304 1 2343 96 3 0 chrX 165039863 165040165 -11933975 - AluSp SINE Alu -10 303 1 738 233 7 7 chrX 165040253 165040399 -11933741 - FRAM SINE Alu -30 146 1 398 328 64 23 chrX 165040399 165040570 -11933570 + MIR SINE MIR 77 254 -8 186 273 0 18 chrX 165040596 165040651 -11933489 - MIR SINE MIR -130 132 79 312 102 0 0 chrX 165040978 165041027 -11933113 + (CA)n Simple_repeat Simple_repeat 2 50 0 2282 97 0 28 chrX 165042224 165042545 -11931595 + AluSx SINE Alu 1 312 0 318 358 45 0 chrX 165043274 165043450 -11930690 - MLT1I LTR MaLR 0 409 226 2361 144 53 10 chrX 165043646 165044057 -11930083 - MSTB1 LTR MaLR 0 432 4 1843 199 40 0 chrX 165044344 165044695 -11929445 - MLT1A1 LTR MaLR 0 365 1 331 301 135 0 chrX 165044725 165044858 -11929282 - MIR SINE MIR 0 262 112 26 64 0 0 chrX 165045917 165045964 -11928176 + AT_rich Low_complexity Low_complexity 1 47 0 1867 219 31 11 chrX 165045975 165046428 -11927712 + L1MC4a LINE L1 7342 7803 -5 2151 88 27 20 chrX 165046437 165046731 -11927409 - AluSx SINE Alu -16 296 1 25 0 0 0 chrX 165046793 165046818 -11927322 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chrX 165046917 165046941 -11927199 + AT_rich Low_complexity Low_complexity 1 24 0 2871 176 64 4 chrX 165047125 165047642 -11926498 + MER44D DNA MER2_type 1 603 -2 2385 107 0 0 chrX 165048059 165048369 -11925771 + AluSq SINE Alu 1 310 -3 2253 106 0 7 chrX 165048466 165048767 -11925373 - AluSx SINE Alu -13 299 1 2379 271 76 32 chrX 165049192 165050276 -11923864 + L2 LINE L2 2095 3237 -76 198 256 17 8 chrX 165051791 165051908 -11922232 + (TA)n Simple_repeat Simple_repeat 1 118 0 21 36 0 0 chrX 165052963 165052991 -11921149 + AT_rich Low_complexity Low_complexity 1 28 0 238 290 29 0 chrX 165053358 165053427 -11920713 - MIR SINE MIR -91 117 47 325 302 26 57 chrX 165053631 165053823 -11920317 + MIR SINE MIR 3 188 -74 335 290 56 0 chrX 165053884 165053991 -11920149 - L2 LINE L2 -10 3303 3191 187 348 44 63 chrX 165054322 165054380 -11919760 - MIR SINE MIR -79 183 125 2507 78 0 0 chrX 165054380 165054689 -11919451 + AluSg SINE Alu 1 309 -1 187 348 44 63 chrX 165054689 165054788 -11919352 - MIR SINE MIR -137 125 29 195 42 0 0 chrX 165054874 165054898 -11919242 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1312 333 19 2 chrX 165055186 165055600 -11918540 - LTR16C LTR ERVL -2 489 69 2521 107 6 11 chrX 165055701 165056067 -11918073 - THE1B LTR MaLR 0 364 1 2287 196 34 40 chrX 165056640 165057141 -11916999 - MLT1D LTR MaLR -7 498 1 2307 92 7 0 chrX 165057996 165058289 -11915851 + AluSx SINE Alu 1 295 -17 263 272 117 10 chrX 165058605 165058708 -11915432 - MIR SINE MIR -72 190 77 2189 102 19 32 chrX 165058734 165059048 -11915092 - AluSq SINE Alu -1 312 3 44 99 0 0 chrX 165059635 165059777 -11914363 + AT_rich Low_complexity Low_complexity 1 142 0 295 317 10 10 chrX 165059832 165059933 -11914207 - MIR SINE MIR -131 131 31 1001 336 28 7 chrX 165060656 165061078 -11913062 - L2 LINE L2 -2440 874 444 532 305 65 5 chrX 165061388 165061588 -11912552 + MIR SINE MIR 51 262 0 1994 119 3 20 chrX 165062114 165062416 -11911724 - AluSx SINE Alu -13 299 3 434 132 13 0 chrX 165062649 165062725 -11911415 + CT-rich Low_complexity Low_complexity 2 78 0 650 119 0 0 chrX 165062728 165062829 -11911311 - AluSp/q SINE Alu -3 310 210 22 0 0 0 chrX 165062876 165062898 -11911242 + AT_rich Low_complexity Low_complexity 1 22 0 2077 97 57 0 chrX 165063470 165063749 -11910391 - AluSp SINE Alu -18 295 1 22 56 0 0 chrX 165064034 165064070 -11910070 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chrX 165064117 165064138 -11910002 + AT_rich Low_complexity Low_complexity 1 21 0 374 324 35 7 chrX 165064347 165064492 -11909648 - L2 LINE L2 -1 3312 3164 2198 86 3 23 chrX 165064510 165064812 -11909328 + AluSx SINE Alu 1 296 -16 5429 48 1 0 chrX 165065447 165066136 -11908004 + L1PA8 LINE L1 5494 6183 0 303 263 46 23 chrX 165066183 165066358 -11907782 - Charlie7 DNA MER1_type 0 2612 2434 2413 87 0 3 chrX 165066530 165066841 -11907299 + AluSg SINE Alu 1 310 0 492 204 0 29 chrX 165067029 165067132 -11907008 - MER5A DNA MER1_type -81 108 9 2283 72 27 10 chrX 165067536 165067828 -11906312 - AluSx SINE Alu -15 297 1 23 78 0 0 chrX 165067862 165067913 -11906227 + AT_rich Low_complexity Low_complexity 1 51 0 594 262 45 24 chrX 165068367 165068657 -11905483 - L1MC5 LINE L1 -53 7908 7613 1550 308 98 34 chrX 165068853 165069596 -11904544 - L2 LINE L2 0 3313 2619 2351 90 3 0 chrX 165069596 165069896 -11904244 + AluSp SINE Alu 1 301 -12 1550 308 98 34 chrX 165069896 165069916 -11904224 - L2 LINE L2 -694 2619 2602 2206 148 13 80 chrX 165069916 165070285 -11903855 + Tigger2a DNA MER2_type 1 334 -2374 2238 106 0 0 chrX 165070285 165070577 -11903563 + AluSx SINE Alu 1 292 -20 2206 148 13 80 chrX 165070577 165070672 -11903468 + Tigger2a DNA MER2_type 334 434 0 1550 308 98 34 chrX 165070672 165071061 -11903079 - L2 LINE L2 -711 2602 2094 21 0 0 0 chrX 165071698 165071719 -11902421 + AT_rich Low_complexity Low_complexity 1 21 0 360 94 0 0 chrX 165071751 165071804 -11902336 + (TC)n Simple_repeat Simple_repeat 2 54 0 493 311 56 23 chrX 165073005 165073287 -11900853 + L1P4 LINE L1 5508 5797 -364 245 254 18 0 chrX 165073295 165073350 -11900790 + MER91A DNA MER1_type 5 60 -136 308 333 11 0 chrX 165073832 165073966 -11900174 + MIR SINE MIR 20 153 -63 261 0 0 0 chrX 165074156 165074185 -11899955 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2298 62 0 0 chrX 165074188 165074464 -11899676 - AluY SINE Alu -35 276 1 2142 97 0 34 chrX 165076851 165077182 -11896958 + AluSg SINE Alu 1 321 0 696 309 51 0 chrX 165077185 165077402 -11896738 - MIR SINE MIR -6 256 29 457 147 13 0 chrX 165077671 165077746 -11896394 + MER31B LTR ERV1 1 76 -390 1195 236 110 9 chrX 165077750 165078077 -11896063 + MER67B LTR ERV1 1 360 -301 363 172 86 0 chrX 165078077 165078170 -11895970 + L1MA4 LINE L1 5181 5281 -865 5233 130 22 61 chrX 165078313 165079132 -11895008 + L1MA4 LINE L1 5301 6150 -150 351 0 0 0 chrX 165079132 165079171 -11894969 + (TA)n Simple_repeat Simple_repeat 2 40 0 1965 78 8 0 chrX 165079171 165079413 -11894727 - AluSp SINE Alu -27 286 43 5233 130 22 61 chrX 165079413 165079624 -11894516 + L1MA4 LINE L1 6148 6292 -8 672 254 51 30 chrX 165079624 165079866 -11894274 + MER67D LTR ERV1 215 467 -47 5778 128 35 0 chrX 165079866 165080791 -11893349 - L1PA15 LINE L1 -2 6163 5229 672 254 51 30 chrX 165080791 165080841 -11893299 + MER67D LTR ERV1 467 514 0 2337 76 0 10 chrX 165080899 165081200 -11892940 + AluSp SINE Alu 1 298 -15 39 38 0 38 chrX 165081541 165081620 -11892520 + AT_rich Low_complexity Low_complexity 1 76 0 1609 70 0 5 chrX 165081858 165082073 -11892067 + L1PA13 LINE L1 5950 6163 0 2005 133 36 21 chrX 165083110 165083441 -11890699 + MER1B DNA MER1_type 1 336 -1 253 282 165 59 chrX 165084016 165084186 -11889954 + MER5A DNA MER1_type 2 189 0 605 292 107 52 chrX 165084196 165084300 -11889840 - L3 LINE CR1 -570 1007 910 2241 117 3 0 chrX 165084300 165084609 -11889531 + AluSg SINE Alu 1 310 0 605 292 107 52 chrX 165084609 165084867 -11889273 - L3 LINE CR1 -667 910 625 2382 90 0 0 chrX 165084885 165085186 -11888954 + AluSp SINE Alu 1 301 -12 220 163 47 0 chrX 165086014 165086057 -11888083 + (TATAG)n Simple_repeat Simple_repeat 4 48 0 2403 76 0 3 chrX 165087033 165087336 -11886804 + AluSx SINE Alu 1 302 -10 197 205 60 133 chrX 165087662 165087745 -11886395 + L2 LINE L2 3187 3263 -9 270 300 108 31 chrX 165087850 165087980 -11886160 + MIR3 SINE MIR 30 169 -39 292 320 33 40 chrX 165088294 165088444 -11885696 + L2 LINE L2 3162 3310 -3 1048 252 30 27 chrX 165088941 165089270 -11884870 - L1MD2 LINE L1 -18 6341 6012 30 0 0 0 chrX 165091637 165091667 -11882473 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chrX 165092027 165092063 -11882077 + AT_rich Low_complexity Low_complexity 1 36 0 677 292 69 4 chrX 165092701 165092934 -11881206 - MIR SINE MIR -2 260 13 349 327 96 40 chrX 165093482 165093681 -11880459 - MIR SINE MIR -33 229 20 2207 105 7 0 chrX 165094014 165094308 -11879832 + AluSg SINE Alu 4 299 -11 1313 269 97 7 chrX 165095184 165095608 -11878532 + LTR40b LTR ERVL 1 462 0 1776 90 60 8 chrX 165095756 165096022 -11878118 - L1PA11 LINE L1 -2 6172 5893 667 320 54 0 chrX 165097346 165097568 -11876572 - MIR SINE MIR -4 258 25 21 0 0 0 chrX 165097746 165097767 -11876373 + AT_rich Low_complexity Low_complexity 1 21 0 2060 131 0 0 chrX 165098097 165098394 -11875746 + AluSx SINE Alu 5 301 -11 242 354 41 14 chrX 165098569 165098716 -11875424 - L2 LINE L2 -1 3312 3162 2086 129 0 0 chrX 165098900 165099187 -11874953 + AluSq SINE Alu 1 287 -26 180 0 0 0 chrX 165099192 165099212 -11874928 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 230 389 78 32 chrX 165099232 165099641 -11874499 - L2 LINE L2 -337 2977 2550 749 319 40 35 chrX 165099651 165099751 -11874389 + MER20B DNA MER1_type 17 115 -668 2226 149 144 7 chrX 165099751 165100195 -11873945 - MLT1D LTR MaLR 0 505 1 749 319 40 35 chrX 165100195 165100545 -11873595 + MER20B DNA MER1_type 115 469 -314 1429 174 31 79 chrX 165100662 165100979 -11873161 - MER21B LTR ERV1 -549 314 13 435 283 42 8 chrX 165101205 165101325 -11872815 + L2 LINE L2 3186 3309 -4 430 274 35 20 chrX 165101638 165101787 -11872353 - MIR SINE MIR -44 218 67 2182 115 0 0 chrX 165102217 165102525 -11871615 + AluSq SINE Alu 1 308 0 26 0 0 0 chrX 165102587 165102613 -11871527 + AT_rich Low_complexity Low_complexity 1 26 0 523 198 198 0 chrX 165102942 165103063 -11871077 + MER5A DNA MER1_type 45 189 0 680 194 133 41 chrX 165103250 165103446 -11870694 - MLT1D LTR MaLR -291 214 1 8297 43 1 1 chrX 165103505 165105295 -11868845 + L1PA6 LINE L1 4361 6150 -4 856 201 5 57 chrX 165106448 165106520 -11867620 + MER5A DNA MER1_type 5 79 -110 2076 66 0 52 chrX 165106520 165106808 -11867332 + AluY SINE Alu 35 307 -4 856 201 5 57 chrX 165106808 165106929 -11867211 + MER5A DNA MER1_type 79 188 -1 2324 108 0 3 chrX 165107023 165107329 -11866811 - AluSg SINE Alu -5 305 1 2419 71 0 3 chrX 165107791 165108100 -11866040 - AluY SINE Alu -1 310 3 2214 78 3 14 chrX 165108673 165108968 -11865172 + AluSp SINE Alu 4 295 -18 248 301 19 19 chrX 165109734 165109837 -11864303 + MER5B DNA MER1_type 74 176 -2 239 139 0 0 chrX 165110264 165110300 -11863840 - MER5A DNA MER1_type -15 174 139 340 276 98 18 chrX 165110300 165110463 -11863677 + L1MA9 LINE L1 6099 6274 -38 603 241 45 0 chrX 165110475 165110608 -11863532 - MER5A DNA MER1_type -50 139 1 2249 86 31 0 chrX 165111608 165111899 -11862241 + AluSx SINE Alu 3 302 -10 25 0 0 0 chrX 165112976 165113001 -11861139 + AT_rich Low_complexity Low_complexity 1 25 0 1761 97 35 0 chrX 165113602 165113860 -11860280 + L1MA6 LINE L1 5527 5793 -507 575 182 0 51 chrX 165113883 165114196 -11859944 + (CATATA)n Simple_repeat Simple_repeat 1 297 0 325 139 30 30 chrX 165114211 165114312 -11859828 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 2787 146 19 10 chrX 165114328 165114842 -11859298 + L1MA6 LINE L1 5782 6300 0 229 146 0 36 chrX 165115528 165115583 -11858557 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 234 163 0 62 chrX 165115630 165115710 -11858430 - Charlie7 DNA MER1_type -73 2539 2465 238 337 97 63 chrX 165115723 165116458 -11857682 - L2 LINE L2 -15 3298 2525 358 360 45 11 chrX 165117184 165117362 -11856778 + MIR3 SINE MIR 19 202 -6 2222 118 0 6 chrX 165117542 165117857 -11856283 - AluSq SINE Alu 0 313 1 252 122 0 0 chrX 165118054 165118095 -11856045 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 267 0 0 chrX 165118440 165118485 -11855655 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 268 255 99 43 chrX 165118529 165118670 -11855470 - L2 LINE L2 -6 3307 3159 197 302 125 10 chrX 165119262 165119358 -11854782 + L2 LINE L2 2565 2671 -643 447 388 39 12 chrX 165119447 165119705 -11854435 - L2 LINE L2 -456 2858 2594 275 276 40 0 chrX 165119890 165119966 -11854174 + L2 LINE L2 3227 3305 -8 210 376 112 0 chrX 165120035 165120160 -11853980 + MIR3 SINE MIR 47 185 -23 369 0 0 0 chrX 165121456 165121497 -11852643 + (TG)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chrX 165121496 165121518 -11852622 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 194 343 0 27 chrX 165121873 165121946 -11852194 + L2 LINE L2 3198 3268 -4 389 245 10 10 chrX 165121968 165122070 -11852070 - MER112 DNA MER1_type 0 260 159 624 294 31 18 chrX 165122321 165122549 -11851591 + LTR40b LTR ERVL 193 423 -39 1920 156 0 16 chrX 165122780 165123094 -11851046 + AluJb SINE Alu 1 309 -3 639 179 75 134 chrX 165123569 165123717 -11850423 + LTR41 LTR ERVL 516 642 -131 1661 178 26 59 chrX 165123717 165124104 -11850036 + MLT1A2 LTR MaLR 1 374 0 639 179 75 134 chrX 165124104 165124223 -11849917 + LTR41 LTR ERVL 642 767 -6 189 191 0 24 chrX 165124883 165124925 -11849215 - MIR SINE MIR 0 262 222 641 278 156 7 chrX 165124968 165125263 -11848877 + L2 LINE L2 2932 3270 -43 204 97 0 0 chrX 165125289 165125320 -11848820 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2268 89 3 0 chrX 165126455 165126748 -11847392 - AluSg SINE Alu -16 294 1 315 267 22 59 chrX 165126856 165126991 -11847149 - L1MC4 LINE L1 -89 7953 7824 2032 108 30 59 chrX 165127846 165128217 -11845923 + MER46B DNA MER2_type 2 236 0 264 161 54 0 chrX 165128989 165129082 -11845058 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 747 214 0 0 chrX 165129091 165129222 -11844918 + FLAM_A SINE Alu 2 132 -1 203 267 0 0 chrX 165129271 165129316 -11844824 + L2 LINE L2 3265 3309 -4 861 194 16 37 chrX 165130577 165130768 -11843372 - MER5A DNA MER1_type -2 187 1 385 372 106 12 chrX 165130799 165131140 -11843000 - L2 LINE L2 -581 2733 2361 591 107 0 74 chrX 165131897 165132018 -11842122 - L1MA9 LINE L1 0 6312 6201 5583 205 37 8 chrX 165132108 165133502 -11840638 + L1PA13 LINE L1 1112 2552 -4245 6292 110 0 1 chrX 165133591 165135048 -11839092 + L1PA15 LINE L1 4742 6161 -4 1751 253 61 19 chrX 165135051 165135625 -11838515 + L1ME1 LINE L1 4554 5151 -995 * 1921 221 57 24 chrX 165135604 165136146 -11837994 + L1ME1 LINE L1 5602 6161 -5 380 290 30 0 chrX 165136163 165136263 -11837877 - L2 LINE L2 -623 2691 2589 228 233 0 50 chrX 165137094 165137154 -11836986 - L2 LINE L2 -9 3263 3207 198 143 0 0 chrX 165138409 165138444 -11835696 + (TG)n Simple_repeat Simple_repeat 2 36 0 3516 24 10 0 chrX 165139634 165140047 -11834093 - L1PA3 LINE L1 -355 5800 5384 3216 27 0 0 chrX 165140056 165140431 -11833709 + L1PA3 LINE L1 5778 6152 -3 29 84 0 0 chrX 165140578 165140649 -11833491 + AT_rich Low_complexity Low_complexity 1 71 0 2164 96 3 3 chrX 165140692 165140994 -11833146 + AluSq SINE Alu 1 302 -11 334 200 20 50 chrX 165140995 165141095 -11833045 + L1PA13 LINE L1 3809 3905 -2892 45 62 0 0 chrX 165141240 165141320 -11832820 + AT_rich Low_complexity Low_complexity 1 80 0 255 152 0 0 chrX 165142027 165142073 -11832067 + GA-rich Low_complexity Low_complexity 1 46 0 236 250 52 73 chrX 165142690 165142786 -11831354 - L2 LINE L2 -86 3227 3134 2041 122 7 0 chrX 165143226 165143522 -11830618 - AluSp SINE Alu -15 298 1 349 285 285 0 chrX 165143686 165143858 -11830282 - MIR SINE MIR 0 262 42 450 351 71 19 chrX 165143875 165144197 -11829943 - L2 LINE L2 -37 3276 2938 219 357 50 0 chrX 165144364 165144504 -11829636 - L2 LINE L2 -826 2488 2342 386 174 47 41 chrX 165144859 165145031 -11829109 + (TTATA)n Simple_repeat Simple_repeat 1 173 0 2302 135 22 0 chrX 165145271 165145627 -11828513 + THE1B LTR MaLR 1 364 0 23 54 0 0 chrX 165146490 165146527 -11827613 + AT_rich Low_complexity Low_complexity 1 37 0 350 107 0 0 chrX 165147629 165147685 -11826455 - L1MA4A LINE L1 -14 6289 6234 302 296 118 12 chrX 165148987 165149156 -11824984 + MIR SINE MIR 75 261 -1 207 139 0 0 chrX 165149156 165149192 -11824948 + (CAT)n Simple_repeat Simple_repeat 1 36 0 207 300 100 0 chrX 165149294 165149354 -11824786 - MIR SINE MIR -81 181 116 22 0 0 0 chrX 165149626 165149648 -11824492 + AT_rich Low_complexity Low_complexity 1 22 0 4546 146 5 5 chrX 165149699 165150448 -11823692 + L1PA16 LINE L1 5407 6155 -11 357 24 0 0 chrX 165150739 165150781 -11823359 + (CA)n Simple_repeat Simple_repeat 1 42 0 236 146 0 21 chrX 165151392 165151440 -11822700 + (TCTCCC)n Simple_repeat Simple_repeat 4 50 0 413 262 16 16 chrX 165152262 165152388 -11821752 + MIR SINE MIR 104 229 -33 3400 32 0 0 chrX 165153626 165154029 -11820111 - L1PA3 LINE L1 0 6155 5753 331 323 115 22 chrX 165154122 165154348 -11819792 + L2 LINE L2 2817 3063 -250 247 289 12 0 chrX 165154358 165154441 -11819699 + (TA)n Simple_repeat Simple_repeat 1 84 0 303 236 16 118 chrX 165154522 165154649 -11819491 + L2 LINE L2 3200 3313 0 570 299 146 46 chrX 165156826 165157439 -11816701 - L1MC4a LINE L1 -589 5565 5262 1989 136 0 23 chrX 165157463 165157771 -11816369 - AluSx SINE Alu -11 301 1 2214 101 7 0 chrX 165158114 165158401 -11815739 - AluSg SINE Alu -21 289 1 23 0 0 0 chrX 165158446 165158469 -11815671 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chrX 165159729 165159754 -11814386 + (A)n Simple_repeat Simple_repeat 1 25 0 6863 44 40 0 chrX 165160022 165161093 -11813047 + L1PA7 LINE L1 5047 6153 -1 247 266 16 0 chrX 165161917 165161981 -11812159 + GA-rich Low_complexity Low_complexity 4 68 0 250 243 14 29 chrX 165162384 165162454 -11811686 - MER74B LTR ERVL -72 550 482 * 325 252 142 25 chrX 165162397 165162519 -11811621 + MER88 LTR ERVL 102 508 -250 529 288 73 30 chrX 165162972 165163219 -11810921 + MIR SINE MIR 4 260 -2 230 262 16 16 chrX 165163301 165163362 -11810778 + L2 LINE L2 3251 3311 -2 302 281 44 56 chrX 165163490 165163711 -11810429 + MIR SINE MIR 2 260 -2 222 295 34 67 chrX 165163841 165163990 -11810150 + MIR3 SINE MIR 58 201 -7 292 357 50 21 chrX 165164422 165164618 -11809522 - MIR3 SINE MIR 0 208 6 294 176 0 0 chrX 165165353 165165370 -11808770 + (TA)n Simple_repeat Simple_repeat 1 17 -51 2475 77 0 0 chrX 165165370 165165680 -11808460 + AluSx SINE Alu 1 310 -2 294 176 0 0 chrX 165165680 165165730 -11808410 + (TA)n Simple_repeat Simple_repeat 16 68 0 1720 200 73 75 chrX 165165736 165166064 -11808076 + MLT1D LTR MaLR 1 329 -176 1665 75 26 18 chrX 165166064 165166292 -11807848 + MER30 DNA MER1_type 1 230 0 1720 200 73 75 chrX 165166292 165166469 -11807671 + MLT1D LTR MaLR 329 505 0 25 51 0 0 chrX 165166540 165166579 -11807561 + AT_rich Low_complexity Low_complexity 1 39 0 2357 55 9 61 chrX 165169036 165169403 -11804737 + AluY SINE Alu 1 350 0 224 275 82 45 chrX 165170750 165170905 -11803235 - MIR SINE MIR -62 146 25 337 347 48 8 chrX 165170991 165171239 -11802901 - MIR SINE MIR 0 262 5 219 229 110 59 chrX 165171330 165171448 -11802692 - L2 LINE L2 0 3313 3190 223 304 64 48 chrX 165171473 165171598 -11802542 - L2 LINE L2 -599 2715 2589 309 122 20 0 chrX 165171601 165171650 -11802490 - MLT1E1 LTR MaLR -2 591 542 2126 208 36 72 chrX 165171697 165172338 -11801802 - MLT1E1 LTR MaLR -37 607 1 2149 124 0 9 chrX 165172806 165173121 -11801019 + AluSx SINE Alu 1 312 0 25 102 0 0 chrX 165173691 165173779 -11800361 + AT_rich Low_complexity Low_complexity 1 88 0 214 365 120 24 chrX 165174116 165174283 -11799857 + MER5A DNA MER1_type 1 183 -6 279 0 0 0 chrX 165175369 165175400 -11798740 + (T)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chrX 165176489 165176510 -11797630 + AT_rich Low_complexity Low_complexity 1 21 0 391 250 23 45 chrX 165177055 165177231 -11796909 + L1MC5 LINE L1 7352 7523 -438 2207 93 0 0 chrX 165177252 165177531 -11796609 + AluSg SINE Alu 1 279 -31 369 0 0 0 chrX 165177531 165177572 -11796568 + (CA)n Simple_repeat Simple_repeat 1 41 0 429 70 0 0 chrX 165177680 165177737 -11796403 + (TG)n Simple_repeat Simple_repeat 2 58 0 219 333 33 0 chrX 165177910 165178000 -11796140 + MIR SINE MIR 3 95 -167 24 53 0 0 chrX 165178202 165178240 -11795900 + AT_rich Low_complexity Low_complexity 1 38 0 2080 99 44 10 chrX 165179179 165179473 -11794667 + AluSq SINE Alu 10 313 0 326 260 226 34 chrX 165179854 165179910 -11794230 + MER5A DNA MER1_type 16 60 -129 2309 163 66 42 chrX 165179910 165180412 -11793728 + MER67D LTR ERV1 1 514 0 326 260 226 34 chrX 165180412 165180501 -11793639 + MER5A DNA MER1_type 60 189 0 1044 244 72 26 chrX 165181936 165182062 -11792078 - Charlie4a DNA MER1_type -1479 482 363 2267 105 0 0 chrX 165182062 165182357 -11791783 + AluSg SINE Alu 1 295 -15 1044 244 72 26 chrX 165182357 165182619 -11791521 - Charlie4a DNA MER1_type -1598 363 76 354 283 71 9 chrX 165183418 165183531 -11790609 - L2 LINE L2 -4 3309 3190 301 203 40 14 chrX 165183667 165183741 -11790399 - MARNA DNA Mariner -191 395 320 2258 76 10 26 chrX 165183870 165184174 -11789966 - AluSg SINE Alu -11 299 1 546 16 0 0 chrX 165184231 165184294 -11789846 + (TG)n Simple_repeat Simple_repeat 2 64 0 1310 127 9 38 chrX 165184786 165184998 -11789142 + AluSg/x SINE Alu 100 305 -7 556 260 0 8 chrX 165185000 165185127 -11789013 + MER5B DNA MER1_type 53 178 0 1590 172 26 14 chrX 165186225 165186573 -11787567 + L1MA6 LINE L1 5949 6300 0 229 146 0 36 chrX 165187259 165187314 -11786826 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 239 337 97 63 chrX 165187454 165188189 -11785951 - L2 LINE L2 -15 3298 2525 352 360 45 11 chrX 165188915 165189093 -11785047 + MIR3 SINE MIR 19 202 -6 2267 114 0 6 chrX 165189273 165189588 -11784552 - AluSq SINE Alu 0 313 1 252 122 0 0 chrX 165189785 165189826 -11784314 + (CA)n Simple_repeat Simple_repeat 2 42 0 201 267 0 0 chrX 165190171 165190216 -11783924 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 266 271 68 57 chrX 165190260 165190437 -11783703 - L2 LINE L2 -6 3307 3129 201 302 125 10 chrX 165190993 165191089 -11783051 + L2 LINE L2 2565 2671 -643 492 204 0 29 chrX 165191231 165191334 -11782806 + MER5A DNA MER1_type 9 108 -81 2413 87 0 3 chrX 165191522 165191833 -11782307 - AluSg SINE Alu 0 310 1 303 263 46 23 chrX 165192005 165192180 -11781960 + Charlie7 DNA MER1_type 2434 2612 0 216 0 0 0 chrX 165192227 165192251 -11781889 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 5428 48 1 0 chrX 165192251 165192916 -11781224 - L1PA8 LINE L1 -13 6159 5494 2198 86 3 23 chrX 165193551 165193853 -11780287 - AluSx SINE Alu -16 296 1 358 331 35 7 chrX 165193871 165194016 -11780124 + L2 LINE L2 3164 3312 -1 21 0 0 0 chrX 165194225 165194246 -11779894 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 165194293 165194329 -11779811 + AT_rich Low_complexity Low_complexity 1 36 0 2077 97 57 0 chrX 165194614 165194893 -11779247 + AluSp SINE Alu 1 295 -18 22 0 0 0 chrX 165195465 165195487 -11778653 + AT_rich Low_complexity Low_complexity 1 22 0 650 119 0 0 chrX 165195534 165195635 -11778505 + AluSp/q SINE Alu 210 310 -3 335 171 13 0 chrX 165195638 165195714 -11778426 + GA-rich Low_complexity Low_complexity 2 78 0 1994 119 3 20 chrX 165195947 165196249 -11777891 + AluSx SINE Alu 3 299 -13 563 317 39 5 chrX 165196775 165196980 -11777160 - MIR SINE MIR 0 262 51 1005 336 28 7 chrX 165197290 165197712 -11776428 + L2 LINE L2 444 874 -2440 295 317 10 10 chrX 165198437 165198538 -11775602 + MIR SINE MIR 31 131 -131 44 99 0 0 chrX 165198593 165198735 -11775405 + AT_rich Low_complexity Low_complexity 1 142 0 2189 102 19 32 chrX 165199322 165199636 -11774504 + AluSq SINE Alu 3 312 -1 263 272 117 10 chrX 165199662 165199765 -11774375 + MIR SINE MIR 77 190 -72 2283 96 7 0 chrX 165200081 165200374 -11773766 - AluSx SINE Alu -17 295 1 468 77 0 0 chrX 165200600 165200665 -11773475 + (CA)n Simple_repeat Simple_repeat 2 66 0 519 286 86 40 chrX 165200682 165200763 -11773377 - LTR33 LTR ERVL -181 340 264 2069 100 7 0 chrX 165200763 165201044 -11773096 - AluSq SINE Alu -13 300 18 519 286 86 40 chrX 165201044 165201287 -11772853 - LTR33 LTR ERVL -257 264 1 835 204 6 12 chrX 165202413 165202580 -11771560 - FRAM SINE Alu 0 166 1 1867 141 7 43 chrX 165203131 165203435 -11770705 - AluSx SINE Alu -19 293 1 195 284 25 86 chrX 165204034 165204196 -11769944 + L2 LINE L2 2847 2998 -274 234 0 0 0 chrX 165204352 165204378 -11769762 + (TG)n Simple_repeat Simple_repeat 2 27 0 1103 263 75 38 chrX 165204743 165205095 -11769045 - L1ME3A LINE L1 0 6170 5796 2090 106 10 20 chrX 165205095 165205397 -11768743 + AluSg SINE Alu 1 299 -11 1103 263 75 38 chrX 165205397 165205496 -11768644 - L1ME3A LINE L1 -374 5796 5702 201 283 203 43 chrX 165205865 165206003 -11768137 + MIR3 SINE MIR 42 201 -7 246 351 45 0 chrX 165206759 165206870 -11767270 - L2 LINE L2 -5 3267 3152 1215 79 6 190 chrX 165606888 165607026 -11367114 + MER4A LTR ERV1 312 447 -296 1861 140 3 0 chrX 165607026 165607319 -11366821 + AluSx SINE Alu 1 294 -18 1215 79 6 190 chrX 165607319 165607443 -11366697 + MER4A LTR ERV1 447 592 -151 998 105 6 93 chrX 165607479 165607592 -11366548 + MER4B LTR ERV1 451 546 -64 1460 113 0 9 chrX 165607592 165607813 -11366327 + AluSg/x SINE Alu 83 301 -9 998 105 6 93 chrX 165607813 165607871 -11366269 + MER4B LTR ERV1 546 607 -3 1068 129 0 0 chrX 165607871 165608026 -11366114 + LTR26B LTR ERV1 48 202 -329 805 111 16 8 chrX 165608031 165608157 -11365983 + AluSq/x SINE Alu 1 127 -186 27 29 0 0 chrX 165608439 165608473 -11365667 + AT_rich Low_complexity Low_complexity 1 34 0 8643 24 0 2 chrX 165608730 165610502 -11363638 - L1PA2 LINE L1 -1 6154 4382 34692 37 34 2 chrX 165610602 165614835 -11359305 - L1PA2 LINE L1 -1774 4372 4 226 207 11 69 chrX 165615076 165615250 -11358890 + (TATAA)n Simple_repeat Simple_repeat 1 164 0 23 33 0 0 chrX 165615648 165615678 -11358462 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chrX 165616048 165616074 -11358066 + AT_rich Low_complexity Low_complexity 1 26 0 332 192 0 0 chrX 165616153 165616226 -11357914 - L1MC4 LINE L1 -505 7817 7745 704 74 11 0 chrX 165616284 165616379 -11357761 - AluY SINE Alu -6 305 210 2140 99 0 7 chrX 165616516 165616810 -11357330 - AluSq SINE Alu -21 292 1 312 371 29 0 chrX 165617593 165617733 -11356407 + L1 LINE L1 3466 3609 -2537 274 319 0 9 chrX 165617751 165617867 -11356273 - L1M4 LINE L1 -2400 3746 3632 2046 112 0 13 chrX 165617906 165618219 -11355921 + AluSc SINE Alu 1 309 0 2075 58 0 0 chrX 165618225 165618483 -11355657 + L1PA8 LINE L1 5915 6172 0 310 227 31 17 chrX 165619312 165619415 -11354725 - L1MC4 LINE L1 -1324 6998 2006 331 250 7 26 chrX 165619424 165619538 -11354602 - L1MC4 LINE L1 -1339 6983 1995 442 187 0 32 chrX 165619538 165619661 -11354479 + (CATA)n Simple_repeat Simple_repeat 4 122 0 386 258 8 47 chrX 165619661 165619813 -11354327 - L1MC4 LINE L1 -1339 6983 1995 322 221 0 15 chrX 165619805 165619873 -11354267 - L1MC4 LINE L1 -4365 2061 1995 * 354 279 47 0 chrX 165619869 165619955 -11354185 - L1MC4 LINE L1 -1339 6703 6614 347 330 0 0 chrX 165619883 165619974 -11354166 + L1MC4 LINE L1 6614 6704 -1338 * 1729 171 55 9 chrX 165619981 165620309 -11353831 - MER2 DNA MER2_type -1 343 1 771 84 45 0 chrX 165620410 165620616 -11353524 + (TAGA)n Simple_repeat Simple_repeat 1 215 0 843 56 39 34 chrX 165620637 165620816 -11353324 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 897 129 50 4 chrX 165621513 165622273 -11351867 + (TCTA)n Simple_repeat Simple_repeat 1 794 0 730 209 40 20 chrX 165622358 165622506 -11351634 + MER2 DNA MER2_type 1 151 -194 2074 103 7 0 chrX 165623293 165623583 -11350557 - AluSx SINE Alu -20 292 1 2237 92 0 0 chrX 165623933 165624228 -11349912 - AluSx SINE Alu -17 295 1 741 212 41 0 chrX 165624967 165625113 -11349027 - AluJb SINE Alu -27 285 134 2089 114 0 3 chrX 165625127 165625433 -11348707 - AluY SINE Alu -6 305 1 189 0 0 0 chrX 165625870 165625891 -11348249 + (TG)n Simple_repeat Simple_repeat 2 22 0 225 175 0 53 chrX 165625939 165625996 -11348144 + L1MC4 LINE L1 6653 6706 -1336 2184 103 7 3 chrX 165626121 165626431 -11347709 - AluSx SINE Alu -1 311 1 513 174 0 0 chrX 165626436 165626534 -11347606 + CT-rich Low_complexity Low_complexity 2 99 0 1404 166 6 72 chrX 165626552 165626871 -11347269 - AluJo SINE Alu -14 298 1 541 185 7 15 chrX 165627014 165627149 -11346991 + CT-rich Low_complexity Low_complexity 1 134 0 2188 104 0 0 chrX 165627160 165627458 -11346682 - AluSx SINE Alu -14 298 1 1619 173 55 20 chrX 165627504 165627851 -11346289 - MER89 LTR ERV1 0 559 201 420 188 12 24 chrX 165627909 165627994 -11346146 + MER58A DNA MER1_type 33 116 0 1064 162 0 0 chrX 165628013 165628198 -11345942 - AluJb SINE Alu -9 303 119 2258 85 0 7 chrX 165628926 165629233 -11344907 + AluSc SINE Alu 1 305 -4 1833 114 11 0 chrX 165629244 165629515 -11344625 + AluSp SINE Alu 26 299 -14 802 67 9 0 chrX 165629525 165629630 -11344510 - L1PA8 LINE L1 -401 5771 5666 * 2884 59 0 61 chrX 165629618 165629681 -11344459 + L1PA8 LINE L1 5767 5832 -340 2256 87 0 25 chrX 165629681 165630002 -11344138 + AluSq SINE Alu 1 313 0 2884 59 0 61 chrX 165630002 165630346 -11343794 + L1PA8 LINE L1 5832 6149 -23 1992 69 11 36 chrX 165630346 165630622 -11343518 + AluSc SINE Alu 28 296 -13 505 153 42 36 chrX 165630870 165631258 -11342882 + (TCTA)n Simple_repeat Simple_repeat 1 390 0 347 159 22 50 chrX 165631319 165631501 -11342639 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 2424 62 3 0 chrX 165632352 165632658 -11341482 - AluY SINE Alu -4 307 1 234 0 0 0 chrX 165632835 165632861 -11341279 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 2084 104 7 0 chrX 165632919 165633207 -11340933 + AluY SINE Alu 1 290 -21 267 31 0 0 chrX 165633207 165633239 -11340901 + (TA)n Simple_repeat Simple_repeat 2 33 0 657 222 19 53 chrX 165633401 165633608 -11340532 - MLT2B1 LTR ERVL -97 423 224 899 139 5 18 chrX 165634319 165634543 -11339597 + (TTCC)n Simple_repeat Simple_repeat 1 220 0 1848 113 0 32 chrX 165634546 165634829 -11339311 - AluSx SINE Alu -38 274 1 708 201 5 7 chrX 165635195 165635374 -11338766 - MLT2B1 LTR ERVL -97 423 269 2136 132 77 3 chrX 165635754 165636119 -11338021 - L1PA14 LINE L1 -1 6160 5769 3582 84 0 0 chrX 165636134 165636609 -11337531 - L1PA5 LINE L1 -3 6151 5677 1338 137 5 0 chrX 165636633 165636837 -11337303 - AluSc SINE Alu -67 242 38 588 108 10 3 chrX 165636851 165636952 -11337188 - L1PA5 LINE L1 -472 5689 5591 2081 115 0 0 chrX 165637021 165637325 -11336815 + AluSc SINE Alu 1 304 -5 1132 179 26 13 chrX 165637328 165637557 -11336583 + L1MC1 LINE L1 5760 5991 -342 627 158 34 9 chrX 165637834 165638276 -11335864 + (TAGA)n Simple_repeat Simple_repeat 1 453 0 591 154 34 14 chrX 165638322 165638617 -11335523 + (TAGA)n Simple_repeat Simple_repeat 1 301 0 216 111 0 0 chrX 165638653 165638689 -11335451 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1876 189 24 3 chrX 165638702 165639040 -11335100 + MER7A DNA MER2_type 2 344 -2 204 146 0 24 chrX 165639072 165639113 -11335027 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 647 171 0 43 chrX 165639113 165639300 -11334840 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 244 197 33 0 chrX 165639313 165639374 -11334766 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 291 203 0 0 chrX 165639374 165639443 -11334697 + (TCCA)n Simple_repeat Simple_repeat 1 69 0 228 35 0 0 chrX 165639519 165639548 -11334592 + (TATG)n Simple_repeat Simple_repeat 4 32 0 183 162 0 0 chrX 165639552 165639589 -11334551 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 961 237 134 56 chrX 165639939 165640335 -11333805 + MLT1D LTR MaLR 21 447 -58 1535 170 20 27 chrX 165640342 165640642 -11333498 - AluSq SINE Alu -15 298 1 912 100 0 27 chrX 165640642 165640792 -11333348 - MER4E LTR ERV1 -404 474 241 244 246 0 18 chrX 165640796 165640853 -11333287 - MLT2B1 LTR ERVL -123 397 342 * 555 195 1 14 chrX 165640822 165640962 -11333178 - MLT2B1 LTR ERVL -123 397 269 3317 24 0 0 chrX 165640970 165641346 -11332794 - L1PA4 LINE L1 -453 5702 5327 3842 31 9 2 chrX 165641346 165641802 -11332338 + L1PA4 LINE L1 5693 6152 -3 1371 56 42 70 chrX 165641802 165642016 -11332124 - MER4E LTR ERV1 -558 208 1 351 274 0 0 chrX 165642079 165642174 -11331966 + LTR16A1 LTR ERVL 61 155 -302 1095 104 7 0 chrX 165642493 165642647 -11331493 - AluSg/x SINE Alu -1 309 155 1861 114 8 0 chrX 165642647 165642934 -11331206 + AluSx SINE Alu 20 308 0 321 251 66 120 chrX 165642963 165643130 -11331010 + L1M2 LINE L1 2408 2565 -4284 233 139 0 0 chrX 165643140 165643176 -11330964 - MER4A LTR ERV1 0 664 629 2160 90 0 7 chrX 165643176 165643475 -11330665 - AluY SINE Alu -14 297 1 990 111 0 7 chrX 165643591 165643735 -11330405 + AluSc SINE Alu 1 143 -166 2070 103 10 0 chrX 165643735 165644027 -11330113 + AluSg SINE Alu 1 295 -15 3692 49 0 0 chrX 165644460 165644908 -11329232 + L1PA7 LINE L1 5707 6154 0 1882 129 0 14 chrX 165644925 165645219 -11328921 + AluSx SINE Alu 1 290 -22 299 190 86 141 chrX 165645421 165645508 -11328632 + MLT1E2 LTR MaLR 13 88 -538 2292 86 3 0 chrX 165645508 165645810 -11328330 + AluSg SINE Alu 1 303 -7 299 190 86 141 chrX 165645810 165645885 -11328255 + MLT1E2 LTR MaLR 88 166 -460 1629 97 8 4 chrX 165645913 165646151 -11327989 - AluSx SINE Alu -13 299 61 1458 116 5 0 chrX 165646432 165646647 -11327493 - AluSg/x SINE Alu -24 286 71 2149 77 17 0 chrX 165646647 165646942 -11327198 - AluY SINE Alu -9 302 1 996 98 0 0 chrX 165646945 165647078 -11327062 - AluSq/x SINE Alu -180 133 1 2187 97 10 0 chrX 165647271 165647571 -11326569 - AluSx SINE Alu -9 303 1 2043 115 0 0 chrX 165647666 165647962 -11326178 + AluSx SINE Alu 1 296 -16 2148 79 6 35 chrX 165648199 165648514 -11325626 - AluSg SINE Alu -4 306 1 2227 112 0 0 chrX 165649008 165649321 -11324819 - AluSq SINE Alu 0 313 1 728 180 4 21 chrX 165649502 165649736 -11324404 + CT-rich Low_complexity Low_complexity 1 230 0 207 67 33 0 chrX 165650235 165650265 -11323875 + (CCCCCT)n Simple_repeat Simple_repeat 5 35 0 723 188 5 29 chrX 165650271 165650715 -11323425 + CT-rich Low_complexity Low_complexity 1 433 0 1762 148 0 14 chrX 165650715 165651006 -11323134 - AluJo SINE Alu -25 287 1 756 170 61 14 chrX 165651006 165651153 -11322987 - LTR39 LTR ERV1 -629 154 1 1371 168 18 60 chrX 165651339 165651419 -11322721 + LTR39 LTR ERV1 285 367 -416 2436 55 0 3 chrX 165651419 165651726 -11322414 + AluY SINE Alu 1 306 -5 1371 168 18 60 chrX 165651726 165651930 -11322210 + LTR39 LTR ERV1 367 557 -226 3660 141 115 81 chrX 165651930 165652091 -11322049 - MER4D LTR ERV1 0 872 718 2155 110 3 0 chrX 165652091 165652401 -11321739 - AluY SINE Alu 0 311 1 3660 141 115 81 chrX 165652401 165652539 -11321601 - MER4D LTR ERV1 -154 718 586 1887 153 0 16 chrX 165652539 165652846 -11321294 + AluSx SINE Alu 1 302 -10 3660 141 115 81 chrX 165652846 165653360 -11320780 - MER4D LTR ERV1 -286 586 30 2233 79 3 32 chrX 165653376 165653692 -11320448 - AluSg SINE Alu -3 307 1 1253 72 12 0 chrX 165653693 165653860 -11320280 - AluSx SINE Alu -143 169 1 1668 159 7 14 chrX 165653869 165653885 -11320255 - AluJb SINE Alu -19 293 278 306 0 0 0 chrX 165653885 165653919 -11320221 + (TG)n Simple_repeat Simple_repeat 1 34 0 1668 159 7 14 chrX 165653919 165654197 -11319943 - AluJb SINE Alu -34 278 1 1895 137 0 11 chrX 165654230 165654515 -11319625 - AluSx SINE Alu -30 282 1 216 0 0 0 chrX 165654533 165654557 -11319583 + (TG)n Simple_repeat Simple_repeat 1 24 0 2003 120 0 10 chrX 165654557 165654841 -11319299 - AluSx SINE Alu -29 283 1 2019 105 0 11 chrX 165654875 165655161 -11318979 - AluSx SINE Alu -29 283 1 1804 139 0 11 chrX 165655200 165655480 -11318660 - AluSx SINE Alu -35 277 1 1840 104 4 25 chrX 165655515 165655793 -11318347 - AluSx SINE Alu -35 277 6 1986 87 29 45 chrX 165656026 165656338 -11317802 + AluSg SINE Alu 1 307 -3 2252 100 0 3 chrX 165657019 165657329 -11316811 + AluY SINE Alu 1 309 -2 3938 131 10 2 chrX 165657329 165657440 -11316700 - MER41B LTR ERV1 -13 622 513 2137 119 3 3 chrX 165657440 165657752 -11316388 + AluSq SINE Alu 1 312 -1 3938 131 10 2 chrX 165657752 165658257 -11315883 - MER41B LTR ERV1 -122 513 1 846 268 49 34 chrX 165658527 165658958 -11315182 - LTR29 LTR ERV1 -8 645 185 2179 125 19 3 chrX 165658959 165659280 -11314860 + THE1B LTR MaLR 39 364 0 2422 137 33 40 chrX 165659613 165660043 -11314097 + MSTB1 LTR MaLR 6 432 0 1298 155 14 0 chrX 165660085 165660304 -11313836 + MLT1B LTR MaLR 169 390 0 2231 163 8 14 chrX 165660697 165661090 -11313050 + MLT1B LTR MaLR 1 467 0 1215 158 10 11 chrX 165661094 165661324 -11312816 + MLT1B LTR MaLR 162 467 0 1334 172 9 0 chrX 165661328 165661555 -11312585 + MLT1B LTR MaLR 162 390 0 644 275 33 102 chrX 165662305 165662389 -11311751 + MLT1I LTR MaLR 126 214 -195 5000 73 8 0 chrX 165662389 165663031 -11311109 - L1PA8 LINE L1 -10 6162 5516 644 275 33 102 chrX 165663031 165663251 -11310889 + MLT1I LTR MaLR 214 409 0 799 211 12 12 chrX 165663786 165663952 -11310188 - FRAM SINE Alu -14 162 1 901 191 0 6 chrX 165663971 165664133 -11310007 + AluJo SINE Alu 111 271 -41 674 143 0 0 chrX 165664133 165664231 -11309909 - AluJ/FLAM SINE Alu -213 99 2 275 163 0 0 chrX 165664502 165664545 -11309595 - L1ME LINE L1 -283 5887 5845 322 340 64 44 chrX 165664655 165664905 -11309235 - MIR SINE MIR 0 262 8 2353 66 3 3 chrX 165666150 165666451 -11307689 + AluY SINE Alu 1 301 -10 640 315 44 48 chrX 165666547 165666982 -11307158 - L1ME3A LINE L1 -71 6099 5667 1436 184 147 21 chrX 165667874 165668254 -11305886 - MSTC LTR MaLR 0 428 1 556 141 0 0 chrX 165668542 165668620 -11305520 - FRAM SINE Alu -26 150 73 231 259 106 77 chrX 165669295 165669465 -11304675 - LTR16B LTR ERVL -237 227 53 259 282 102 47 chrX 165669613 165669975 -11304165 + L1MC/D LINE L1 5353 5734 -2074 2082 130 0 7 chrX 165670865 165671173 -11302967 + AluSp SINE Alu 1 306 -7 2088 95 0 0 chrX 165671183 165671490 -11302650 + AluSx SINE Alu 1 307 0 1717 259 72 13 chrX 165671568 165671842 -11302298 + MER89 LTR ERV1 1 257 -302 2273 82 0 10 chrX 165671842 165672145 -11301995 + AluY SINE Alu 1 300 -11 1717 259 72 13 chrX 165672145 165672398 -11301742 + MER89 LTR ERV1 257 559 0 186 160 80 60 chrX 165672626 165672676 -11301464 + MIR SINE MIR 97 147 -61 1368 202 16 26 chrX 165672789 165673096 -11301044 + AluJo SINE Alu 1 304 -8 192 97 0 0 chrX 165673250 165673281 -11300859 + (GA)n Simple_repeat Simple_repeat 2 32 0 847 232 163 92 chrX 165673353 165673410 -11300730 - MER92B LTR ERV1 -1 635 583 1748 147 12 38 chrX 165673410 165673730 -11300410 + AluSx SINE Alu 1 312 0 847 232 163 92 chrX 165673730 165674055 -11300085 - MER92B LTR ERV1 -53 583 202 1876 142 13 0 chrX 165674055 165674358 -11299782 + AluSq SINE Alu 1 307 -6 847 232 163 92 chrX 165674358 165674508 -11299632 - MER92B LTR ERV1 -434 202 64 806 151 50 0 chrX 165674508 165674647 -11299493 + AluY SINE Alu 72 217 -94 1044 127 0 0 chrX 165674648 165674813 -11299327 + (TTCC)n Simple_repeat Simple_repeat 4 168 0 1812 168 7 0 chrX 165674832 165675141 -11298999 - AluSx SINE Alu -1 311 1 410 191 0 0 chrX 165675143 165675211 -11298929 - MER92B LTR ERV1 -567 69 2 718 282 129 6 chrX 165675211 165675559 -11298581 - MER69 DNA AcHobo -21 2505 2115 1898 90 10 10 chrX 165675560 165675849 -11298291 + AluSg SINE Alu 1 289 -21 1278 141 0 19 chrX 165675957 165676163 -11297977 - AluSp SINE Alu -111 202 1 1820 137 3 31 chrX 165676165 165676486 -11297654 - AluSx SINE Alu 0 312 1 219 36 0 0 chrX 165676488 165676516 -11297624 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1788 110 3 21 chrX 165676516 165676798 -11297342 - AluSx SINE Alu -31 281 5 447 313 23 23 chrX 165676799 165677052 -11297088 - MER69 DNA AcHobo -461 2065 1810 2197 94 0 3 chrX 165677052 165677349 -11296791 - AluSc SINE Alu -13 296 1 733 278 15 0 chrX 165677350 165677548 -11296592 - MLT2B1 LTR ERVL -309 211 11 485 244 129 10 chrX 165677557 165677758 -11296382 + MLT1C LTR MaLR 121 345 -122 1032 249 108 38 chrX 165677772 165678190 -11295950 + MLT1C LTR MaLR 5 451 -16 1055 162 5 16 chrX 165679192 165679383 -11294757 + AluJo SINE Alu 105 293 -19 1679 139 52 0 chrX 165679386 165679703 -11294437 + AluJb SINE Alu 1 331 0 2317 72 0 0 chrX 165680008 165680300 -11293840 + AluY SINE Alu 1 292 -19 2143 108 0 3 chrX 165681080 165681386 -11292754 + AluSg SINE Alu 1 305 -5 354 220 20 50 chrX 165681473 165681573 -11292567 - MER68 LTR ERV1 0 562 466 2043 123 0 16 chrX 165681577 165681894 -11292246 - AluSx SINE Alu 0 312 1 312 161 0 0 chrX 165681911 165681973 -11292167 - Alu SINE Alu 0 302 241 677 228 42 12 chrX 165682049 165682216 -11291924 - AluJb SINE Alu -7 305 134 2105 114 0 3 chrX 165682217 165682524 -11291616 - AluSc SINE Alu -3 306 1 586 210 178 51 chrX 165682561 165682775 -11291365 + MLT1C LTR MaLR 6 246 -144 1550 162 60 81 chrX 165682776 165683005 -11291135 - THE1C LTR MaLR 0 375 156 2141 115 3 3 chrX 165683005 165683317 -11290823 + AluSp SINE Alu 1 312 -1 1550 162 60 81 chrX 165683317 165683469 -11290671 - THE1C LTR MaLR -219 156 2 318 140 69 10 chrX 165683670 165683757 -11290383 - MSTA LTR MaLR -265 99 3 1040 181 42 67 chrX 165683772 165684010 -11290130 + MSTA LTR MaLR 68 299 -129 574 228 8 8 chrX 165684003 165684130 -11290010 + MLT1C LTR MaLR 324 450 -17 * 1751 106 0 68 chrX 165684279 165684571 -11289569 - AluSc SINE Alu -11 298 27 181 231 77 0 chrX 165684843 165684895 -11289245 + MIR SINE MIR 86 141 -121 324 319 0 11 chrX 165685329 165685420 -11288720 - MIR3 SINE MIR -9 199 110 1451 154 32 12 chrX 165685657 165685903 -11288237 + MSTA LTR MaLR 2 252 -176 2161 116 0 0 chrX 165685904 165686207 -11287933 + AluSg SINE Alu 1 303 -7 1659 201 11 32 chrX 165686208 165686586 -11287554 - L1PB4 LINE L1 -122 6034 5665 978 63 0 53 chrX 165686586 165686776 -11287364 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1527 147 8 0 chrX 165686813 165687064 -11287076 - AluSx SINE Alu 0 312 60 613 186 10 10 chrX 165687067 165687195 -11286945 - L1PB4 LINE L1 -478 5676 5546 3285 152 2 31 chrX 165687195 165687625 -11286515 - MER1A DNA MER1_type -2175 525 113 2117 112 3 7 chrX 165687625 165687929 -11286211 + AluSx SINE Alu 1 303 -9 3285 152 2 31 chrX 165687929 165688039 -11286101 - MER1A DNA MER1_type -2587 113 1 613 186 10 10 chrX 165688039 165688072 -11286068 - L1PB4 LINE L1 -607 5547 5515 2090 93 3 52 chrX 165688528 165688852 -11285288 - AluY SINE Alu -3 308 1 2039 117 7 7 chrX 165688893 165689201 -11284939 - AluSq SINE Alu -5 308 1 2115 94 0 52 chrX 165689242 165689570 -11284570 - AluSq SINE Alu -2 311 1 1059 204 39 14 chrX 165689689 165690019 -11284121 + MLT1C LTR MaLR 5 422 -45 1791 167 3 3 chrX 165690019 165690441 -11283699 - AluSx SINE Alu 0 422 1 2895 132 2 2 chrX 165690558 165691006 -11283134 - L1PB1 LINE L1 -3 6148 5701 407 103 15 0 chrX 165691007 165691075 -11283065 + L1PB2 LINE L1 6080 6148 -3 682 142 1 9 chrX 165691091 165691216 -11282924 - L1PB1 LINE L1 -454 5702 5578 369 152 0 51 chrX 165691216 165691295 -11282845 - L1P5 LINE L1 -525 5626 5552 * 412 137 0 14 chrX 165691265 165691338 -11282802 - L1P5 LINE L1 -525 5626 5555 369 82 0 0 chrX 165691314 165691363 -11282777 - L1P5 LINE L1 -525 5626 5578 * 385 108 40 14 chrX 165691363 165691437 -11282703 - L1P5 LINE L1 -525 5626 5551 * 395 151 0 14 chrX 165691412 165691485 -11282655 - L1P5 LINE L1 -525 5626 5555 365 178 0 14 chrX 165691461 165691534 -11282606 - L1P5 LINE L1 -525 5626 5555 * 376 98 0 0 chrX 165691510 165691561 -11282579 - L1P5 LINE L1 -525 5626 5576 2642 110 1 7 chrX 165691561 165692024 -11282116 - L1P5 LINE L1 -527 5624 5164 1965 122 7 3 chrX 165692699 165692994 -11281146 + AluSq SINE Alu 2 297 -16 401 301 241 34 chrX 165693582 165693743 -11280397 - L1MC5 LINE L1 -74 7887 7761 2013 110 0 35 chrX 165693743 165694061 -11280079 - AluSg SINE Alu -3 307 1 401 301 241 34 chrX 165694061 165694248 -11279892 - L1MC5 LINE L1 -200 7761 7467 1576 111 9 0 chrX 165694474 165694700 -11279440 - AluSg/x SINE Alu 0 310 83 584 167 47 0 chrX 165694708 165694858 -11279282 + GA-rich Low_complexity Low_complexity 4 160 0 2298 92 3 0 chrX 165695695 165695999 -11278141 - AluSx SINE Alu -7 305 1 644 263 29 34 chrX 165696006 165696318 -11277822 - MSTD LTR MaLR 0 396 10 304 242 85 26 chrX 165696475 165696608 -11277532 + MIR3 SINE MIR 76 212 -41 677 215 85 22 chrX 165696696 165696919 -11277221 - L1MA9 LINE L1 -39 6273 6037 1332 97 0 0 chrX 165696967 165697153 -11276987 - AluY SINE Alu -6 305 120 229 222 19 0 chrX 165697161 165697215 -11276925 + CT-rich Low_complexity Low_complexity 3 57 0 2132 99 3 7 chrX 165698010 165698304 -11275836 + AluSx SINE Alu 1 293 -19 1891 139 7 3 chrX 165698735 165699037 -11275103 - AluSx SINE Alu -9 303 1 1821 255 23 13 chrX 165699046 165699580 -11274560 - L1MB5 LINE L1 -1 6179 5666 1893 208 6 3 chrX 165699580 165699927 -11274213 + MLT1A1 LTR MaLR 1 348 -17 478 280 91 17 chrX 165701924 165702156 -11271984 + MER76 LTR ERV 3 251 -437 2197 75 18 0 chrX 165702444 165702762 -11271378 + AluSq SINE Alu 1 323 0 1983 86 32 4 chrX 165702774 165703052 -11271088 + AluSx SINE Alu 1 286 -26 335 222 0 28 chrX 165703053 165703125 -11271015 + L1MC4 LINE L1 6636 6705 -1337 217 246 0 18 chrX 165703137 165703194 -11270946 + (TATG)n Simple_repeat Simple_repeat 2 57 0 997 66 15 7 chrX 165703297 165703434 -11270706 - AluSq/x SINE Alu -174 138 1 853 246 0 0 chrX 165703445 165703636 -11270504 - AluJb SINE Alu -2 310 120 2230 91 0 3 chrX 165703644 165703941 -11270199 - AluSq SINE Alu -17 296 1 2112 100 0 0 chrX 165704194 165704484 -11269656 - AluSc SINE Alu -19 290 1 700 113 0 0 chrX 165704917 165705014 -11269126 + AluSg/x SINE Alu 196 292 -20 212 179 0 0 chrX 165705255 165705294 -11268846 + A-rich Low_complexity Low_complexity 2 40 0 554 77 13 0 chrX 165705323 165705401 -11268739 + L1MA2 LINE L1 6073 6151 -153 364 57 0 60 chrX 165705401 165705443 -11268697 - THE1B LTR MaLR 0 355 339 2226 103 0 0 chrX 165705443 165705753 -11268387 + AluSx SINE Alu 1 310 -2 364 57 0 60 chrX 165705753 165705778 -11268362 - THE1B LTR MaLR -16 339 314 1851 143 34 28 chrX 165705783 165706105 -11268035 - THE1B LTR MaLR -25 339 16 413 105 0 0 chrX 165706105 165706162 -11267978 - THE1B LTR MaLR -292 72 16 * 428 103 0 0 chrX 165706161 165706219 -11267921 - THE1B LTR MaLR -291 73 16 415 105 0 0 chrX 165706218 165706275 -11267865 - THE1B LTR MaLR -291 73 17 * 529 123 0 0 chrX 165706275 165706348 -11267792 - THE1B LTR MaLR -291 73 1 785 93 0 0 chrX 165706348 165706455 -11267685 + L1MA2 LINE L1 6147 6253 -51 1020 212 13 31 chrX 165706533 165706759 -11267381 - MLT2B1 LTR ERVL -227 293 72 1821 54 0 0 chrX 165706771 165706993 -11267147 + L1PA7 LINE L1 5925 6146 -8 249 83 62 0 chrX 165707048 165707096 -11267044 + L1MA3 LINE L1 6255 6305 0 210 154 0 0 chrX 165707571 165707610 -11266530 + GA-rich Low_complexity Low_complexity 4 42 0 309 241 56 28 chrX 165707649 165707757 -11266383 + L1M4 LINE L1 3073 3183 -2963 675 195 22 4 chrX 165707757 165708039 -11266101 + GA-rich Low_complexity Low_complexity 1 287 0 804 145 0 38 chrX 165708047 165708233 -11265907 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 793 117 0 48 chrX 165708263 165708451 -11265689 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1135 120 0 0 chrX 165709149 165709316 -11264824 - AluSq SINE Alu -18 295 129 21 0 0 0 chrX 165709323 165709344 -11264796 + AT_rich Low_complexity Low_complexity 1 21 0 2372 84 0 0 chrX 165709998 165710306 -11263834 - AluSx SINE Alu -4 308 1 958 128 0 0 chrX 165710443 165710584 -11263556 + AluSg/x SINE Alu 155 295 -17 1331 258 66 34 chrX 165710907 165711349 -11262791 - MLT1C LTR MaLR -6 461 6 815 243 88 40 chrX 165711364 165711693 -11262447 - MLT1C LTR MaLR -122 345 1 763 250 100 36 chrX 165711709 165711989 -11262151 - MLT1C LTR MaLR -128 339 42 214 338 13 13 chrX 165712268 165712345 -11261795 - L2 LINE L2 -7 3306 3230 2549 181 24 18 chrX 165712498 165712919 -11261221 - MER75 DNA T2_type -4 510 84 2020 91 35 3 chrX 165712919 165713205 -11260935 + AluSx SINE Alu 1 295 -17 2549 181 24 18 chrX 165713205 165713290 -11260850 - MER75 DNA T2_type -430 84 1 1741 115 0 0 chrX 165713860 165714112 -11260028 - AluSx SINE Alu -15 297 46 1101 52 0 0 chrX 165714112 165714246 -11259894 - AluSg SINE Alu -176 134 1 39 22 0 0 chrX 165714639 165714685 -11259455 + AT_rich Low_complexity Low_complexity 1 46 0 1781 122 21 3 chrX 165714730 165715017 -11259123 - AluY SINE Alu -19 292 1 21 0 0 0 chrX 165715025 165715046 -11259094 + AT_rich Low_complexity Low_complexity 1 21 0 216 187 67 30 chrX 165715240 165715374 -11258766 + (TA)n Simple_repeat Simple_repeat 2 140 0 2143 98 0 0 chrX 165715380 165715667 -11258473 + AluSg SINE Alu 1 287 -23 249 267 61 0 chrX 165715783 165715914 -11258226 + (TA)n Simple_repeat Simple_repeat 1 139 0 305 197 33 0 chrX 165715930 165715991 -11258149 - L1MC4 LINE L1 -1340 6702 6640 341 232 71 27 chrX 165716216 165716328 -11257812 + MLT1A1 LTR MaLR 5 121 -244 * 1140 234 33 4 chrX 165716310 165716583 -11257557 + MLT1A1 LTR MaLR 33 313 -52 2011 158 8 22 chrX 165716629 165716960 -11257180 + MLT1A1 LTR MaLR 4 331 -34 2018 87 4 7 chrX 165716960 165717235 -11256905 - AluSx SINE Alu -13 299 26 2011 158 8 22 chrX 165717235 165717270 -11256870 + MLT1A1 LTR MaLR 331 365 0 2199 81 0 10 chrX 165717436 165717734 -11256406 + AluSg SINE Alu 1 295 -15 2035 101 7 0 chrX 165718086 165718372 -11255768 - AluSq SINE Alu -25 288 1 565 247 86 0 chrX 165718376 165718538 -11255602 - MLT1C LTR MaLR -285 182 7 2072 99 3 7 chrX 165718820 165719124 -11255016 + AluSg SINE Alu 1 303 -7 1937 116 18 0 chrX 165719139 165719424 -11254716 + AluSq SINE Alu 1 290 -23 182 79 66 26 chrX 165719427 165719460 -11254680 + (TATAA)n Simple_repeat Simple_repeat 2 32 -48 1964 114 0 3 chrX 165719460 165719750 -11254390 + AluSq SINE Alu 1 289 -24 182 79 66 26 chrX 165719750 165719783 -11254357 + (TATAA)n Simple_repeat Simple_repeat 32 74 -6 2110 114 0 3 chrX 165719783 165720091 -11254049 + AluSq SINE Alu 1 307 -6 182 79 66 26 chrX 165720091 165720099 -11254041 + (TATAA)n Simple_repeat Simple_repeat 74 80 0 827 216 64 57 chrX 165720470 165720752 -11253388 + L1MB8 LINE L1 5856 6139 -39 932 86 0 16 chrX 165720840 165720968 -11253172 + AluSq/x SINE Alu 1 126 -186 264 61 0 0 chrX 165721060 165721093 -11253047 + THE1B LTR MaLR 155 187 -177 841 152 30 42 chrX 165721098 165721263 -11252877 - AluJo SINE Alu -38 274 112 180 0 0 0 chrX 165721272 165721292 -11252848 + (TA)n Simple_repeat Simple_repeat 2 21 0 1551 137 4 0 chrX 165721292 165721557 -11252583 + AluSx SINE Alu 42 307 0 507 121 29 114 chrX 165721557 165721653 -11252487 - Tigger1 DNA MER2_type -97 2321 2239 1284 56 0 0 chrX 165721653 165721813 -11252327 - L1PA5 LINE L1 -3 6151 5992 507 121 29 114 chrX 165721813 165721856 -11252284 - Tigger1 DNA MER2_type -179 2239 2194 347 224 17 95 chrX 165721841 165721957 -11252183 - Tigger1 DNA MER2_type -2311 107 1 * 1817 129 7 0 chrX 165722026 165722375 -11251765 - AluSx SINE Alu 0 351 1 203 318 19 19 chrX 165723670 165723824 -11250316 + (TAA)n Simple_repeat Simple_repeat 2 155 0 203 318 19 19 chrX 165724021 165724175 -11249965 + (TAA)n Simple_repeat Simple_repeat 2 155 0 203 318 19 19 chrX 165725081 165725235 -11248905 + (TAA)n Simple_repeat Simple_repeat 2 155 0 2209 99 0 6 chrX 165726819 165727131 -11247009 + AluY SINE Alu 1 310 -1 1870 131 0 3 chrX 165727201 165727511 -11246629 + AluSx SINE Alu 1 309 0 722 187 0 0 chrX 165727513 165727636 -11246504 + MSTC LTR MaLR 47 169 -259 1367 140 5 0 chrX 165727699 165727913 -11246227 - MLT1B LTR MaLR -17 373 159 1385 140 5 9 chrX 165727914 165728148 -11245992 - MLT1B LTR MaLR 0 396 159 440 188 13 32 chrX 165728149 165728273 -11245867 - MLT1A1 LTR MaLR 0 365 285 4496 78 3 0 chrX 165728999 165729586 -11244554 + L1PA7 LINE L1 5566 6154 0 774 201 6 56 chrX 165729819 165729989 -11244151 + MLT1C LTR MaLR 1 161 -306 768 243 33 0 chrX 165729989 165730170 -11243970 - MLT1A1 LTR MaLR 0 365 179 324 150 17 0 chrX 165730207 165730267 -11243873 - MLT1A1 LTR MaLR -334 92 32 270 169 34 0 chrX 165730265 165730324 -11243816 - MSTB LTR MaLR -334 92 32 * 259 141 31 31 chrX 165730317 165730381 -11243759 - MSTB LTR MaLR -331 95 32 * 352 105 18 0 chrX 165730381 165730438 -11243702 - MSTB LTR MaLR -337 89 32 275 196 18 0 chrX 165730440 165730496 -11243644 - MSTB LTR MaLR -338 88 32 256 183 17 0 chrX 165730494 165730554 -11243586 - MSTB LTR MaLR -334 92 32 * 231 136 34 34 chrX 165730547 165730606 -11243534 - MSTB LTR MaLR -331 95 37 * 316 119 34 0 chrX 165730609 165730668 -11243472 - MSTB LTR MaLR -334 92 32 290 167 17 0 chrX 165730666 165730726 -11243414 - MSTB LTR MaLR -334 92 32 * 293 143 18 0 chrX 165730728 165730784 -11243356 - MSTB LTR MaLR -338 88 32 284 169 17 0 chrX 165730782 165730841 -11243299 - MSTB1 LTR MaLR -340 92 33 * 305 150 17 0 chrX 165730840 165730900 -11243240 - MSTB LTR MaLR -334 92 32 257 203 17 0 chrX 165730898 165730957 -11243183 - MSTB1 LTR MaLR -340 92 33 * 294 167 17 0 chrX 165730956 165731016 -11243124 - MSTB LTR MaLR -334 92 32 * 298 172 17 0 chrX 165731014 165731072 -11243068 - MSTB1 LTR MaLR -340 92 34 246 123 46 46 chrX 165731067 165731132 -11243008 - MSTB LTR MaLR -331 95 31 * 303 154 15 31 chrX 165731124 165731189 -11242951 - MSTB LTR MaLR -331 95 32 * 336 150 17 0 chrX 165731187 165731247 -11242893 - MSTB LTR MaLR -334 92 32 299 183 17 0 chrX 165731245 165731305 -11242835 - MSTB LTR MaLR -334 92 32 * 295 167 17 0 chrX 165731361 165731421 -11242719 - MSTB1 LTR MaLR -340 92 32 256 154 19 0 chrX 165731424 165731476 -11242664 - MSTB LTR MaLR -339 87 35 232 209 15 30 chrX 165731469 165731536 -11242604 - MSTB1 LTR MaLR -334 98 33 * 229 217 17 0 chrX 165731535 165731595 -11242545 - MSTB LTR MaLR -334 92 32 * 330 133 17 0 chrX 165731593 165731653 -11242487 - MSTB LTR MaLR -334 92 32 * 369 117 17 0 chrX 165731651 165731711 -11242429 - MSTB LTR MaLR -334 92 32 271 179 18 0 chrX 165731713 165731769 -11242371 - MSTB LTR MaLR -338 88 32 249 200 17 0 chrX 165731767 165731827 -11242313 - MSTB LTR MaLR -334 92 32 * 303 186 17 0 chrX 165731825 165731884 -11242256 - MSTB1 LTR MaLR -340 92 33 285 167 17 0 chrX 165731883 165731943 -11242197 - MSTB LTR MaLR -334 92 32 * 295 183 17 0 chrX 165731941 165732001 -11242139 - MSTB LTR MaLR -334 92 32 * 313 150 17 0 chrX 165731999 165732059 -11242081 - MSTB LTR MaLR -334 92 32 278 200 17 0 chrX 165732057 165732117 -11242023 - MSTB LTR MaLR -334 92 32 * 349 133 17 0 chrX 165732115 165732175 -11241965 - MSTB1 LTR MaLR -340 92 32 294 169 15 31 chrX 165732168 165732233 -11241907 - MSTB1 LTR MaLR -337 95 32 * 284 108 31 46 chrX 165732226 165732291 -11241849 - MSTB LTR MaLR -331 95 32 * 296 167 17 0 chrX 165732289 165732349 -11241791 - MSTB LTR MaLR -334 92 32 * 316 150 17 0 chrX 165732347 165732407 -11241733 - MSTB LTR MaLR -334 92 32 297 172 17 0 chrX 165732405 165732463 -11241677 - MSTB LTR MaLR -334 92 34 * 269 185 15 31 chrX 165732458 165732523 -11241617 - MSTB LTR MaLR -331 95 32 * 278 183 17 0 chrX 165732521 165732581 -11241559 - MSTB LTR MaLR -334 92 32 301 143 18 0 chrX 165732583 165732639 -11241501 - MSTB LTR MaLR -338 88 32 * 309 167 17 0 chrX 165732637 165732697 -11241443 - MSTB LTR MaLR -334 92 32 295 183 17 0 chrX 165732695 165732755 -11241385 - MSTB LTR MaLR -334 92 32 * 330 133 17 0 chrX 165732753 165732813 -11241327 - MSTB LTR MaLR -334 92 32 291 148 16 16 chrX 165732811 165732872 -11241268 - MSTB LTR MaLR -334 92 32 * 247 164 91 0 chrX 165732870 165732925 -11241215 - MSTB1 LTR MaLR -340 92 33 * 330 167 17 0 chrX 165732924 165732984 -11241156 - MSTB1 LTR MaLR -340 92 32 306 154 15 31 chrX 165732977 165733042 -11241098 - MSTB LTR MaLR -331 95 32 * 333 153 17 0 chrX 165733040 165733099 -11241041 - MSTB1 LTR MaLR -340 92 33 299 167 17 0 chrX 165733098 165733158 -11240982 - MSTB LTR MaLR -334 92 32 * 265 200 17 0 chrX 165733156 165733216 -11240924 - MSTB LTR MaLR -334 92 32 * 268 167 17 0 chrX 165733214 165733274 -11240866 - MSTB LTR MaLR -334 92 32 * 322 164 16 0 chrX 165733272 165733333 -11240807 - MSTB LTR MaLR -334 92 31 309 156 0 47 chrX 165733330 165733394 -11240746 - MSTB LTR MaLR -334 92 32 * 315 156 0 47 chrX 165733392 165733456 -11240684 - MSTB LTR MaLR -334 92 32 249 169 34 0 chrX 165733454 165733513 -11240627 - MSTB LTR MaLR -334 92 32 * 280 175 18 0 chrX 165733516 165733573 -11240567 - MSTB LTR MaLR -339 87 30 272 164 16 49 chrX 165733569 165733630 -11240510 - MSTB1 LTR MaLR -340 92 34 * 316 113 32 32 chrX 165733625 165733687 -11240453 - MSTB LTR MaLR -331 95 34 567 135 10 21 chrX 165733740 165733836 -11240304 - MSTB LTR MaLR -331 95 1 750 256 165 4 chrX 165733873 165734139 -11240001 + MLT1C LTR MaLR 157 465 -2 1937 121 0 43 chrX 165734222 165734544 -11239596 - AluSg SINE Alu 0 310 3 616 279 6 6 chrX 165734576 165734741 -11239399 + MLT1C LTR MaLR 301 465 -2 2005 114 7 7 chrX 165734804 165735102 -11239038 - AluSc SINE Alu -11 298 1 359 237 0 44 chrX 165735269 165735383 -11238757 + L1MA8 LINE L1 6179 6287 -4 400 309 0 15 chrX 165735503 165735639 -11238501 + MLT1B LTR MaLR 255 388 -2 2161 95 0 28 chrX 165735733 165736050 -11238090 - AluSg SINE Alu -2 308 1 237 237 8 51 chrX 165736156 165736274 -11237866 + L1MA8 LINE L1 6179 6291 0 314 100 0 0 chrX 165736297 165736337 -11237803 - U6 snRNA snRNA -66 41 2 525 213 70 30 chrX 165736394 165736550 -11237590 + MLT1C LTR MaLR 320 465 -2 1657 116 0 41 chrX 165736573 165736916 -11237224 + AluSx SINE Alu 28 359 0 1380 117 5 59 chrX 165736971 165737193 -11236947 - THE1B LTR MaLR 0 364 155 1665 87 0 0 chrX 165737193 165737412 -11236728 + AluSq SINE Alu 1 219 -94 1978 133 0 16 chrX 165737412 165737720 -11236420 + AluSg SINE Alu 1 303 -7 2107 97 7 0 chrX 165738005 165738295 -11235845 - AluSq SINE Alu -21 292 1 1255 144 10 0 chrX 165738659 165738860 -11235280 + AluSx SINE Alu 1 203 -109 499 62 0 0 chrX 165738860 165738925 -11235215 + AluSq/x SINE Alu 69 133 -180 923 128 0 0 chrX 165738925 165739058 -11235082 + AluSq/x SINE Alu 1 133 -180 1940 138 0 0 chrX 165739058 165739355 -11234785 + AluSx SINE Alu 1 297 -15 1950 137 3 0 chrX 165739572 165739879 -11234261 - AluSx SINE Alu -4 308 1 259 79 26 0 chrX 165740796 165740834 -11233306 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 970 147 28 17 chrX 165740834 165741185 -11232955 + GA-rich Low_complexity Low_complexity 3 356 0 430 323 128 15 chrX 165741185 165741380 -11232760 + HAL1 LINE L1 1716 1932 -575 2167 98 0 10 chrX 165741875 165742182 -11231958 - AluSx SINE Alu -8 304 1 2907 93 19 14 chrX 165742520 165743056 -11231084 - LTR61 LTR ERV1 0 595 1 1638 123 35 147 chrX 165743083 165743505 -11230635 - THE1C LTR MaLR 0 375 1 645 93 12 0 chrX 165743567 165743653 -11230487 - THE1B LTR MaLR -277 87 1 599 116 12 0 chrX 165743715 165743801 -11230339 - THE1B LTR MaLR -277 87 1 645 93 12 0 chrX 165743863 165743949 -11230191 - THE1B LTR MaLR -277 87 1 600 111 0 0 chrX 165744016 165744097 -11230043 - THE1B LTR MaLR -283 81 1 618 89 0 0 chrX 165744164 165744243 -11229897 - THE1B LTR MaLR -283 81 3 2185 92 0 43 chrX 165745647 165745974 -11228166 - AluSq SINE Alu 0 313 1 1751 184 37 85 chrX 165746276 165746448 -11227692 + MSTB1 LTR MaLR 3 182 -182 3255 58 0 5 chrX 165746448 165746861 -11227279 - L1PA7 LINE L1 -1 6153 5743 1751 184 37 85 chrX 165746861 165747069 -11227071 + MSTB1 LTR MaLR 182 398 34 222 116 0 0 chrX 165747069 165747112 -11227028 + (ATTG)n Simple_repeat Simple_repeat 2 44 0 1904 108 0 47 chrX 165747113 165747409 -11226731 - AluSq SINE Alu -31 282 1 1751 184 37 85 chrX 165747409 165747466 -11226674 + MSTB1 LTR MaLR 298 356 -8 2050 111 0 0 chrX 165747685 165747973 -11226167 + AluSc SINE Alu 11 298 -11 1917 126 0 11 chrX 165748049 165748361 -11225779 + AluSx SINE Alu 1 309 0 334 73 0 0 chrX 165748534 165748575 -11225565 - Alu SINE Alu -259 42 2 780 181 58 47 chrX 165748575 165748746 -11225394 + AluJb SINE Alu 116 288 -24 1917 116 0 4 chrX 165748758 165749035 -11225105 + AluSx SINE Alu 25 300 -12 638 219 118 25 chrX 165749151 165749389 -11224751 + MLT1C LTR MaLR 55 314 -153 507 155 0 0 chrX 165749398 165749482 -11224658 + L1MA8 LINE L1 6193 6276 -15 2081 131 0 0 chrX 165749553 165749865 -11224275 + AluSq SINE Alu 1 312 -1 2173 89 0 3 chrX 165750103 165750395 -11223745 - AluSx SINE Alu -4 308 18 1970 68 0 29 chrX 165750448 165750729 -11223411 + AluY SINE Alu 33 305 -6 1838 85 0 0 chrX 165751260 165751495 -11222645 + AluSx SINE Alu 1 235 -77 21 0 0 0 chrX 165751504 165751525 -11222615 + AT_rich Low_complexity Low_complexity 1 21 0 2438 61 0 3 chrX 165752072 165752412 -11221728 - AluY SINE Alu 0 339 1 1972 126 0 13 chrX 165752540 165752850 -11221290 - AluSx SINE Alu -4 308 3 1758 175 0 3 chrX 165752860 165753168 -11220972 - AluJo SINE Alu -3 309 3 7321 45 6 0 chrX 165753250 165754180 -11219960 - L1PA6 LINE L1 -1 6153 5221 1379 65 0 0 chrX 165754180 165754350 -11219790 - L1P2 LINE L1 -493 5661 5492 1948 107 3 37 chrX 165754821 165755121 -11219019 - AluSx SINE Alu -20 292 3 1708 155 21 10 chrX 165755260 165755550 -11218590 - AluSx SINE Alu -19 293 1 2049 87 3 69 chrX 165755619 165755951 -11218189 - AluSg SINE Alu 0 310 1 2155 110 0 0 chrX 165756241 165756550 -11217590 + AluSg SINE Alu 1 309 -1 1486 69 0 0 chrX 165756551 165756739 -11217401 + AluY SINE Alu 124 311 0 1515 102 127 8 chrX 165756828 165757106 -11217034 - AluSg SINE Alu 0 314 8 442 260 21 0 chrX 165757252 165757348 -11216792 - MER5A DNA MER1_type -83 106 9 2173 89 3 0 chrX 165757624 165757917 -11216223 + AluSc SINE Alu 11 304 -5 207 0 0 0 chrX 165758297 165758320 -11215820 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 32 26 0 0 chrX 165758320 165758359 -11215781 + AT_rich Low_complexity Low_complexity 1 39 0 2034 157 167 10 chrX 165758460 165758873 -11215267 + LTR19A LTR ERV1 1 478 -8 2020 95 20 0 chrX 165758877 165759171 -11214969 - AluY SINE Alu -11 300 1 1966 119 4 4 chrX 165759596 165759874 -11214266 + AluSx SINE Alu 1 278 -34 715 159 9 27 chrX 165759874 165760328 -11213812 + GA-rich Low_complexity Low_complexity 1 446 0 2055 119 0 0 chrX 165760936 165761230 -11212910 - AluSg SINE Alu -16 294 1 402 282 134 35 chrX 165761233 165761435 -11212705 + MLT1C LTR MaLR 156 377 -90 1023 75 0 0 chrX 165761437 165761571 -11212569 + AluYb8 SINE Alu 1 134 -184 2084 96 0 0 chrX 165761571 165761892 -11212248 + AluY SINE Alu 1 321 0 1151 177 43 0 chrX 165761964 165762173 -11211967 - MLT1A1 LTR MaLR 0 365 148 557 149 0 0 chrX 165762163 165762250 -11211890 - MLT1A1 LTR MaLR -131 234 148 * 573 149 0 0 chrX 165762240 165762327 -11211813 - MLT1A1 LTR MaLR -131 234 148 557 149 0 0 chrX 165762317 165762404 -11211736 - MLT1A1 LTR MaLR -131 234 148 * 573 149 0 0 chrX 165762394 165762481 -11211659 - MLT1A1 LTR MaLR -131 234 148 557 149 0 0 chrX 165762471 165762558 -11211582 - MLT1A1 LTR MaLR -131 234 148 * 579 138 0 0 chrX 165762548 165762635 -11211505 - MLT1A1 LTR MaLR -131 234 148 * 708 143 0 0 chrX 165762625 165762730 -11211410 - MLT1A1 LTR MaLR -131 234 130 1644 214 30 68 chrX 165762743 165762905 -11211235 + MSTB LTR MaLR 17 184 -242 3445 43 0 0 chrX 165762905 165763319 -11210821 - L1PA5 LINE L1 0 6154 5741 1644 214 30 68 chrX 165763319 165763544 -11210596 + MSTB LTR MaLR 184 389 -37 2118 105 7 3 chrX 165763544 165763849 -11210291 - AluSx SINE Alu -6 306 1 1644 214 30 68 chrX 165763849 165763886 -11210254 + MSTB LTR MaLR 389 426 0 737 161 15 7 chrX 165763886 165764023 -11210117 - MLT1A1 LTR MaLR -227 138 1 782 267 22 17 chrX 165764023 165764255 -11209885 + MER92B LTR ERV1 26 258 -378 628 254 60 67 chrX 165764257 165764439 -11209701 - MLT1C LTR MaLR -93 374 193 2235 89 7 0 chrX 165764439 165764741 -11209399 - AluSp SINE Alu -9 304 1 628 254 60 67 chrX 165764741 165764842 -11209298 - MLT1C LTR MaLR -274 193 93 250 254 91 27 chrX 165764831 165764941 -11209199 + MER92B LTR ERV1 254 370 -266 * 2299 60 7 10 chrX 165765163 165765462 -11208678 + AluY SINE Alu 1 298 -13 1013 153 0 0 chrX 165765462 165765632 -11208508 + AluSg/x SINE Alu 133 302 -7 1346 232 67 36 chrX 165765739 165766187 -11207953 - MLT1C LTR MaLR 0 467 6 1062 206 92 49 chrX 165766202 165766528 -11207612 - MLT1C LTR MaLR -122 345 6 652 274 55 60 chrX 165766543 165766697 -11207443 - MLT1C LTR MaLR -122 345 192 2062 113 10 0 chrX 165766697 165766998 -11207142 - AluSg SINE Alu -6 304 1 652 274 55 60 chrX 165766998 165767161 -11206979 - MLT1C LTR MaLR -275 192 24 1721 169 0 72 chrX 165767974 165768142 -11205998 - LTR39 LTR ERV1 -1 782 604 2010 100 10 0 chrX 165768142 165768433 -11205707 - AluSg SINE Alu -16 294 1 1721 169 0 72 chrX 165768433 165768459 -11205681 - LTR39 LTR ERV1 -179 604 578 1313 232 0 3 chrX 165768459 165768752 -11205388 - AluJb SINE Alu -20 292 1 1721 169 0 72 chrX 165768752 165768904 -11205236 - LTR39 LTR ERV1 -205 578 460 709 110 10 0 chrX 165768906 165769006 -11205134 + AluS SINE Alu 2 102 -210 685 189 12 6 chrX 165769006 165769170 -11204970 + GA-rich Low_complexity Low_complexity 2 166 0 218 192 19 0 chrX 165769188 165769240 -11204900 + A-rich Low_complexity Low_complexity 3 55 0 246 165 71 0 chrX 165769251 165769336 -11204804 + GA-rich Low_complexity Low_complexity 4 94 0 1033 45 34 28 chrX 165769348 165769527 -11204613 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3853 81 0 6 chrX 165770238 165770754 -11203386 - L1PA8 LINE L1 0 6172 5660 1444 176 0 22 chrX 165770764 165771042 -11203098 - AluJo SINE Alu -23 289 18 234 0 0 0 chrX 165771057 165771083 -11203057 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 660 153 17 25 chrX 165771085 165771203 -11202937 - FLAM_C SINE Alu -16 117 1 2050 103 3 0 chrX 165771587 165771877 -11202263 - AluSg SINE Alu -19 291 1 2219 99 0 3 chrX 165772456 165772760 -11201380 + AluSg SINE Alu 1 303 -7 3532 111 39 42 chrX 165773092 165773123 -11201017 + LTR61 LTR ERV1 1 31 -564 2268 60 0 0 chrX 165773123 165773426 -11200714 + AluY SINE Alu 1 303 0 3532 111 39 42 chrX 165773426 165773990 -11200150 + LTR61 LTR ERV1 31 595 0 2304 104 0 0 chrX 165774004 165774312 -11199828 + AluSg SINE Alu 1 308 -2 556 305 0 9 chrX 165774330 165774540 -11199600 + L1M4 LINE L1 2325 2532 -3614 226 224 0 0 chrX 165774580 165774629 -11199511 + L1M4 LINE L1 2535 2583 -3563 1746 161 3 0 chrX 165774657 165774942 -11199198 + AluJb SINE Alu 1 286 -26 1655 148 30 0 chrX 165774979 165775271 -11198869 + AluSx SINE Alu 7 306 0 183 100 0 0 chrX 165775273 165775303 -11198837 + (CAAT)n Simple_repeat Simple_repeat 3 32 0 2183 275 47 66 chrX 165775304 165775635 -11198505 + L1M4 LINE L1 2644 2980 -3166 1901 98 3 83 chrX 165775635 165775960 -11198180 + AluSx SINE Alu 1 299 -13 2183 275 47 66 chrX 165775960 165776507 -11197633 + L1M4 LINE L1 2980 3536 -2610 2000 121 3 0 chrX 165776507 165776789 -11197351 - AluSc SINE Alu -26 283 1 2183 275 47 66 chrX 165776789 165777392 -11196748 + L1M4 LINE L1 3536 4098 -2048 2038 124 3 3 chrX 165777457 165777764 -11196376 - AluSc SINE Alu -2 307 1 240 183 28 28 chrX 165777764 165777835 -11196305 - L1M LINE L1 -975 5328 5258 2137 107 0 0 chrX 165777995 165778295 -11195845 - AluSg SINE Alu -10 300 1 274 363 28 28 chrX 165778379 165778591 -11195549 - L1MC4a LINE L1 -1897 5911 5700 2173 95 10 0 chrX 165778636 165778931 -11195209 - AluSp SINE Alu -15 298 1 183 80 0 0 chrX 165779077 165779102 -11195038 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 826 179 0 7 chrX 165779102 165779247 -11194893 - FRAM SINE Alu -32 144 1 2021 117 0 7 chrX 165779251 165779551 -11194589 - AluSc SINE Alu -11 298 1 1942 135 0 0 chrX 165779724 165780006 -11194134 - AluSx SINE Alu -30 282 1 558 186 27 26 chrX 165780013 165780470 -11193670 + CT-rich Low_complexity Low_complexity 1 457 0 215 271 35 35 chrX 165780928 165781013 -11193127 + MIR SINE MIR 143 227 -35 1964 121 3 26 chrX 165781067 165781380 -11192760 - AluSc SINE Alu -3 306 1 561 254 0 0 chrX 165781455 165781585 -11192555 - L1MB5 LINE L1 -314 5860 5731 * 819 201 19 43 chrX 165781574 165781783 -11192357 + L1MB5 LINE L1 5971 6174 0 1984 91 57 3 chrX 165781794 165782091 -11192049 - AluSq SINE Alu 0 313 1 1765 129 0 0 chrX 165782325 165782589 -11191551 + AluSx SINE Alu 14 277 -35 344 219 31 62 chrX 165782594 165782690 -11191450 - L1MC4 LINE L1 -1337 6705 6613 335 167 43 0 chrX 165782705 165782867 -11191273 + (TA)n Simple_repeat Simple_repeat 1 169 0 268 136 45 30 chrX 165782894 165783026 -11191114 + (TA)n Simple_repeat Simple_repeat 2 135 0 424 118 0 0 chrX 165783347 165783415 -11190725 + AluSc SINE Alu 240 307 -2 424 333 11 6 chrX 165783637 165783814 -11190326 + MER5B DNA MER1_type 1 178 0 389 113 0 0 chrX 165783919 165783972 -11190168 - L1P4 LINE L1 -449 5712 5660 1968 128 0 0 chrX 165783972 165784282 -11189858 - AluSx SINE Alu 0 311 2 991 65 0 0 chrX 165784283 165784406 -11189734 - AluSq/x SINE Alu -177 135 13 481 60 60 0 chrX 165784406 165784473 -11189667 - AluSg/x SINE Alu -174 136 66 1329 112 0 0 chrX 165784474 165784661 -11189479 - AluSx SINE Alu -113 199 13 586 90 0 0 chrX 165784663 165784741 -11189399 - AluSg SINE Alu -176 134 57 1243 127 0 0 chrX 165784741 165784930 -11189210 - AluSg SINE Alu -121 189 1 2216 143 0 3 chrX 165784931 165785280 -11188860 - L1PA13 LINE L1 -486 5679 5332 1636 175 10 22 chrX 165785270 165785400 -11188740 + L1PA13 LINE L1 5696 5826 -337 * 2237 91 3 3 chrX 165785400 165785708 -11188432 + AluSp SINE Alu 1 308 -5 1636 175 10 22 chrX 165785708 165785891 -11188249 + L1PA13 LINE L1 5826 6005 -158 1845 133 6 47 chrX 165785897 165786214 -11187926 - AluSx SINE Alu -8 304 1 411 231 71 71 chrX 165786218 165786387 -11187753 - MLT1B LTR MaLR -219 171 3 2239 93 3 3 chrX 165786502 165786802 -11187338 + AluSx SINE Alu 1 300 -12 618 82 59 12 chrX 165787322 165787492 -11186648 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 301 118 56 45 chrX 165787521 165787699 -11186441 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 480 121 40 29 chrX 165787739 165787913 -11186227 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 573 115 41 25 chrX 165787957 165788208 -11185932 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 1089 257 70 3 chrX 165788208 165788539 -11185601 - MLT1C LTR MaLR -56 411 59 187 382 47 29 chrX 165788624 165788794 -11185346 - L2 LINE L2 -643 2671 2499 364 221 13 0 chrX 165788843 165788920 -11185220 - MER20 DNA MER1_type -141 78 1 237 163 0 0 chrX 165788950 165788999 -11185141 + GA-rich Low_complexity Low_complexity 2 50 0 613 154 32 15 chrX 165789004 165789542 -11184598 + (TAGA)n Simple_repeat Simple_repeat 1 547 0 378 199 17 33 chrX 165789575 165789756 -11184384 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 198 71 0 0 chrX 165789776 165789804 -11184336 + (TAGG)n Simple_repeat Simple_repeat 4 31 0 304 272 143 57 chrX 165789856 165790157 -11183983 + L1MEc LINE L1 840 1166 -5230 1917 111 0 7 chrX 165790239 165790518 -11183622 + AluSg SINE Alu 1 277 -33 1684 144 49 3 chrX 165990584 165990910 -10983230 + MLT1A1 LTR MaLR 25 365 0 603 211 23 11 chrX 165992636 165992811 -10981329 + GA-rich Low_complexity Low_complexity 1 177 0 284 299 19 9 chrX 165992824 165992931 -10981209 - LTR16C LTR ERVL 0 491 384 22 56 0 0 chrX 165994282 165994318 -10979822 + AT_rich Low_complexity Low_complexity 1 36 0 349 278 123 31 chrX 165994828 165995055 -10979085 - LTR16C LTR ERVL 0 491 244 601 189 0 117 chrX 165995596 165995802 -10978338 - L1PBa LINE L1 -1558 5304 5123 9460 177 32 28 chrX 165995805 165998225 -10975915 - L1PBa LINE L1 -1949 4913 2207 2403 98 0 3 chrX 165998225 165998532 -10975608 - AluSc SINE Alu -3 306 1 9460 177 32 28 chrX 165998532 166000110 -10974030 - L1PBa LINE L1 -4655 2207 636 918 200 15 0 chrX 166000112 166000307 -10973833 - L1PBa LINE L1 -6663 200 3 305 104 0 0 chrX 166001682 166001730 -10972410 - MLT2B1 LTR ERVL 0 520 473 234 147 44 0 chrX 166001730 166001798 -10972342 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 716 240 54 104 chrX 166001857 166002174 -10971966 - MLT2B1 LTR ERVL -43 477 177 23 0 0 0 chrX 166004014 166004037 -10970103 + AT_rich Low_complexity Low_complexity 1 23 0 323 262 39 39 chrX 166004315 166004418 -10969722 - MIR SINE MIR -116 146 44 207 0 0 0 chrX 166004771 166004794 -10969346 + (CA)n Simple_repeat Simple_repeat 1 23 0 1546 166 19 28 chrX 166004964 166005283 -10968857 - L1MC1 LINE L1 -15 6318 6003 257 292 79 0 chrX 166005327 166005416 -10968724 + MIR3 SINE MIR 108 203 -5 2191 123 3 0 chrX 166006345 166006637 -10967503 - AluSx SINE Alu -19 293 1 405 225 72 77 chrX 166006761 166006983 -10967157 - MER106A DNA MER1_type -15 221 1 180 179 0 0 chrX 166007249 166007288 -10966852 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 260 120 20 0 chrX 166008147 166008197 -10965943 + (TA)n Simple_repeat Simple_repeat 2 52 0 630 204 131 45 chrX 166008876 166009052 -10965088 + MER33 DNA MER1_type 5 205 -2380 602 270 108 38 chrX 166009052 166009393 -10964747 - MLT1A1 LTR MaLR 0 365 1 630 204 131 45 chrX 166009393 166009437 -10964703 + MER33 DNA MER1_type 205 244 -80 1569 242 65 5 chrX 166009923 166010353 -10963787 + MLT1F LTR MaLR 87 542 0 357 328 42 36 chrX 166010628 166010820 -10963320 - L3 LINE CR1 -4 1573 1381 579 12 38 0 chrX 166011675 166011755 -10962385 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 1715 180 3 3 chrX 166011755 166012039 -10962101 - AluJo SINE Alu -28 284 1 2449 120 53 16 chrX 166012089 166012523 -10961617 + LTR7 LTR ERV1 1 450 0 441 279 156 7 chrX 166013863 166014017 -10960123 + MER5A DNA MER1_type 13 189 0 1901 170 0 16 chrX 166014091 166014408 -10959732 + AluJo SINE Alu 1 312 0 21 36 0 0 chrX 166015586 166015614 -10958526 + AT_rich Low_complexity Low_complexity 1 28 0 1806 140 11 0 chrX 166015715 166015980 -10958160 + AluJb SINE Alu 36 303 -9 21 0 0 0 chrX 166016115 166016136 -10958004 + AT_rich Low_complexity Low_complexity 1 21 0 699 197 8 0 chrX 166016353 166016485 -10957655 - FLAM_A SINE Alu 0 133 1 841 194 69 103 chrX 166017183 166017415 -10956725 + MLT1D LTR MaLR 228 488 -16 1277 210 91 11 chrX 166017506 166017792 -10956348 - AluJo SINE Alu -3 309 1 3832 151 17 5 chrX 166018508 166019150 -10954990 + MER39B LTR ERV1 1 650 -3 2353 143 22 3 chrX 166019150 166019507 -10954633 + THE1B LTR MaLR 1 364 0 2250 114 34 14 chrX 166019966 166020324 -10953816 + MLT1A1 LTR MaLR 1 365 0 183 303 9 128 chrX 166020770 166020827 -10953313 - L2 LINE L2 -19 3253 3213 597 229 16 6 chrX 166020827 166021010 -10953130 - MER53 DNA DNA -1 188 4 183 303 9 128 chrX 166021010 166021061 -10953079 - L2 LINE L2 -59 3213 3158 246 169 0 0 chrX 166021822 166021875 -10952265 - MLT2C1 LTR ERVL -3 507 349 207 204 0 0 chrX 166021897 166021941 -10952199 + (TG)n Simple_repeat Simple_repeat 2 45 0 2005 171 50 41 chrX 166021954 166022417 -10951723 - MLT2B1 LTR ERVL -44 476 10 373 209 33 22 chrX 166022442 166022533 -10951607 - MER5A DNA MER1_type -85 104 13 222 356 45 15 chrX 166022995 166023127 -10951013 - MIR3 SINE MIR -63 145 10 338 103 51 0 chrX 166024158 166024236 -10949904 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2180 123 0 0 chrX 166024290 166024590 -10949550 - AluSx SINE Alu -12 300 1 1745 171 4 4 chrX 166024810 166025091 -10949049 + AluJo SINE Alu 6 286 -26 23 0 0 0 chrX 166025099 166025122 -10949018 + AT_rich Low_complexity Low_complexity 1 23 0 288 347 41 34 chrX 166025306 166025453 -10948687 + L2 LINE L2 2874 3021 -292 1412 182 15 52 chrX 166025504 166025828 -10948312 - AluJb SINE Alu 0 312 1 272 342 0 0 chrX 166025900 166025979 -10948161 + L2 LINE L2 3235 3313 0 243 125 0 0 chrX 166026565 166026605 -10947535 + (GGA)n Simple_repeat Simple_repeat 2 41 0 213 261 29 29 chrX 166026961 166027026 -10947114 - L2 LINE L2 -4 3309 3244 734 9 47 9 chrX 166027026 166027132 -10947008 + (GAAA)n Simple_repeat Simple_repeat 1 110 0 2079 124 0 7 chrX 166027708 166027999 -10946141 + AluSx SINE Alu 1 289 -23 2015 144 82 10 chrX 166028033 166028421 -10945719 + MSTA LTR MaLR 1 416 -12 1425 217 48 46 chrX 166028600 166028894 -10945246 - MLT1C LTR MaLR 0 467 170 1645 167 22 29 chrX 166028894 166029206 -10944934 - AluJo SINE Alu -2 310 1 1425 217 48 46 chrX 166029206 166029372 -10944768 - MLT1C LTR MaLR -297 170 6 225 273 0 0 chrX 166029531 166029586 -10944554 - MER81 DNA DNA -56 58 4 806 306 105 37 chrX 166030645 166030760 -10943380 - L2 LINE L2 -4 3309 3203 1673 146 4 15 chrX 166030760 166031021 -10943119 + AluJo SINE Alu 1 258 -54 806 306 105 37 chrX 166031021 166031651 -10942489 - L2 LINE L2 -110 3203 2503 1435 224 64 64 chrX 166032223 166032709 -10941431 - MER21B LTR ERV1 -108 755 270 619 308 128 0 chrX 166034965 166035176 -10938964 - MIR SINE MIR -6 256 19 205 222 19 0 chrX 166035337 166035391 -10938749 + A-rich Low_complexity Low_complexity 5 59 0 492 346 74 17 chrX 166036062 166036293 -10937847 + MIR SINE MIR 19 262 0 192 77 0 0 chrX 166036779 166036805 -10937335 + (TC)n Simple_repeat Simple_repeat 1 26 0 215 260 62 21 chrX 166037038 166037134 -10937006 - L2 LINE L2 0 3272 3173 205 125 21 21 chrX 166037802 166037850 -10936290 + (TA)n Simple_repeat Simple_repeat 2 49 0 290 250 11 33 chrX 166038745 166038837 -10935303 - LTR16C LTR ERVL 0 491 402 2054 116 4 0 chrX 166039243 166039520 -10934620 - AluSx SINE Alu -6 306 29 343 299 90 22 chrX 166040006 166040140 -10934000 - MIR SINE MIR -114 148 6 280 289 33 0 chrX 166041648 166041738 -10932402 + L1MC4a LINE L1 5720 5812 -1996 180 0 0 0 chrX 166041739 166041759 -10932381 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 341 200 47 59 chrX 166041817 166041902 -10932238 + L1MC4a LINE L1 5990 6073 -1735 698 118 0 0 chrX 166042157 166042259 -10931881 - AluJ/FLAM SINE Alu -210 102 1 207 210 32 16 chrX 166042306 166042368 -10931772 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 205 361 30 38 chrX 166042374 166042507 -10931633 + L2 LINE L2 3141 3272 0 180 0 0 0 chrX 166042955 166042975 -10931165 + (A)n Simple_repeat Simple_repeat 1 20 0 585 133 29 0 chrX 166043435 166043540 -10930600 - L1MA7 LINE L1 -3 6288 6181 373 238 171 6 chrX 166043805 166043969 -10930171 + LTR16A1 LTR ERVL 266 456 -1 251 325 67 17 chrX 166044111 166044231 -10929909 + MIR SINE MIR 100 225 -37 425 134 12 37 chrX 166044605 166044687 -10929453 + Tigger2a DNA MER2_type 1 80 -354 3319 150 108 2 chrX 166044687 166045555 -10928585 - LTR28 LTR ERV1 0 1020 1 2183 122 46 30 chrX 166045555 166045687 -10928453 + Tigger2a DNA MER2_type 76 204 -2514 2319 72 3 3 chrX 166045687 166045979 -10928161 - AluY SINE Alu -19 292 1 2183 122 46 30 chrX 166045979 166046199 -10927941 + Tigger2a DNA MER2_type 204 434 -10 1600 146 57 31 chrX 166046388 166046777 -10927363 - L1MA8 LINE L1 -126 6040 5609 1211 176 33 0 chrX 166046779 166047023 -10927117 + L1MA6 LINE L1 6049 6300 0 249 108 0 0 chrX 166049545 166049582 -10924558 + (TG)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chrX 166051115 166051146 -10922994 + (TG)n Simple_repeat Simple_repeat 2 32 0 1880 251 40 19 chrX 166051505 166052028 -10922112 - MLT1F1 LTR MaLR 0 567 34 949 175 0 2 chrX 166052032 166052266 -10921874 + AluJo SINE Alu 1 282 -30 315 0 0 0 chrX 166052272 166052307 -10921833 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 229 163 0 23 chrX 166052307 166052350 -10921790 - MLT1F1 LTR MaLR -525 42 1 212 167 0 19 chrX 166052564 166052618 -10921522 + (CA)n Simple_repeat Simple_repeat 2 54 0 227 152 0 0 chrX 166052813 166052859 -10921281 - L1MC4 LINE L1 -1339 6703 6658 313 21 21 21 chrX 166052906 166052953 -10921187 + (TA)n Simple_repeat Simple_repeat 2 48 0 * 342 0 0 0 chrX 166052952 166052990 -10921150 + (GA)n Simple_repeat Simple_repeat 2 39 0 2489 251 46 7 chrX 166052996 166053605 -10920535 + MER82 DNA MER2_type 10 642 -11 361 295 93 21 chrX 166053620 166053813 -10920327 - HAL1 LINE L1 -1074 1433 1227 980 63 0 0 chrX 166053984 166054111 -10920029 + AluY SINE Alu 183 309 -2 689 77 0 0 chrX 166054130 166054221 -10919919 + L1M1 LINE L1 5727 5817 -488 197 65 32 0 chrX 166054228 166054259 -10919881 + (CA)n Simple_repeat Simple_repeat 1 32 0 339 237 61 18 chrX 166055527 166055641 -10918499 + LTR50 LTR ERVL 565 683 -112 1210 225 37 4 chrX 166055648 166055892 -10918248 + MLT1E LTR MaLR 340 591 -2 360 291 160 29 chrX 166056052 166056258 -10917882 + MIR SINE MIR 28 260 -2 1710 144 4 4 chrX 166056492 166056770 -10917370 - L1PA15 LINE L1 -1 6164 5887 3245 153 32 18 chrX 166056894 166057210 -10916930 + MER7C DNA MER2_type 27 356 -2672 2499 110 31 8 chrX 166057210 166057566 -10916574 - THE1B LTR MaLR 0 364 1 3245 153 32 18 chrX 166057566 166057817 -10916323 + MER7C DNA MER2_type 356 602 0 761 239 8 86 chrX 166058512 166058608 -10915532 + MER58A DNA MER1_type 1 103 -2317 2281 81 0 16 chrX 166058608 166058915 -10915225 - AluSx SINE Alu -10 302 1 761 239 8 86 chrX 166058915 166059061 -10915079 + MER58A DNA MER1_type 103 224 0 5598 90 11 18 chrX 166059834 166059899 -10914241 - L1MA1 LINE L1 -4 6298 6234 2154 133 36 30 chrX 166059899 166060261 -10913879 + THE1B LTR MaLR 1 364 0 5598 90 11 18 chrX 166060261 166061025 -10913115 - L1MA1 LINE L1 -68 6234 5475 561 146 0 0 chrX 166061057 166061139 -10913001 - L1PA15-16 LINE L1 -5904 945 864 1989 138 10 0 chrX 166065546 166065843 -10908297 + AluJb SINE Alu 1 300 -12 1039 65 12 24 chrX 166065961 166066130 -10908010 + (TTTC)n Simple_repeat Simple_repeat 2 168 0 1796 123 7 18 chrX 166066136 166066412 -10907728 - AluSx SINE Alu -35 277 5 521 175 103 0 chrX 166067325 166067451 -10906689 - MER106B DNA MER1_type -15 1044 906 192 200 0 0 chrX 166069434 166069479 -10904661 + (TA)n Simple_repeat Simple_repeat 1 45 0 311 272 0 43 chrX 166069485 166069577 -10904563 - L1MC4 LINE L1 -1339 6703 6616 388 224 0 9 chrX 166069582 166069698 -10904442 + (TA)n Simple_repeat Simple_repeat 2 116 0 181 116 23 23 chrX 166069813 166069856 -10904284 + (CA)n Simple_repeat Simple_repeat 2 44 0 26 50 0 0 chrX 166071056 166071096 -10903044 + AT_rich Low_complexity Low_complexity 1 40 0 186 324 14 14 chrX 166071638 166071709 -10902431 + MIR SINE MIR 20 90 -172 246 128 0 0 chrX 166072037 166072076 -10902064 + (A)n Simple_repeat Simple_repeat 1 39 0 722 312 17 13 chrX 166072745 166072976 -10901164 - MLT1E3 LTR MaLR -26 567 336 415 237 0 0 chrX 166073010 166073103 -10901037 - L1MA4A LINE L1 -23 6280 6188 582 166 79 0 chrX 166073107 166073246 -10900894 - L1MA4A LINE L1 -182 6121 5972 1057 229 50 21 chrX 166073349 166073589 -10900551 - MLT1E3 LTR MaLR -377 247 1 457 254 133 29 chrX 166074678 166074957 -10899183 + MLT1H LTR MaLR 205 512 -37 229 345 95 27 chrX 166075112 166075448 -10898692 + L2 LINE L2 2457 2815 -499 1955 154 19 16 chrX 166075847 166076224 -10897916 - L1MA8 LINE L1 -11 6280 5903 366 276 18 80 chrX 166076436 166076599 -10897541 - MARNA DNA Mariner -373 213 61 247 65 43 0 chrX 166077730 166077776 -10896364 + T-rich Low_complexity Low_complexity 1 48 0 2062 267 57 50 chrX 166077995 166078182 -10895958 - L1ME3 LINE L1 -7 6155 5971 7092 57 0 11 chrX 166078182 166079316 -10894824 - L1PA5 LINE L1 0 6154 5026 2062 267 57 50 chrX 166079316 166081056 -10893084 - L1ME3 LINE L1 -191 5971 4196 4238 18 0 0 chrX 166081059 166081574 -10892566 + L1P LINE L1 2783 3297 -2849 899 191 0 6 chrX 166082836 166082998 -10891142 + FRAM SINE Alu 2 162 -4 333 0 0 0 chrX 166083930 166083967 -10890173 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 236 399 25 15 chrX 166084319 166084522 -10889618 + L2 LINE L2 1819 2023 -1291 297 0 0 0 chrX 166084993 166085026 -10889114 + (CA)n Simple_repeat Simple_repeat 1 33 0 186 356 44 11 chrX 166085041 166085131 -10889009 - L2 LINE L2 -46 3226 3134 2059 147 20 42 chrX 166085340 166085695 -10888445 + THE1B LTR MaLR 1 347 -17 510 31 0 0 chrX 166085720 166085784 -10888356 + (TG)n Simple_repeat Simple_repeat 2 65 0 1585 196 32 3 chrX 166085805 166086116 -10888024 - MLT2D LTR ERVL -94 320 1 25 0 0 0 chrX 166086982 166087007 -10887133 + AT_rich Low_complexity Low_complexity 1 25 0 2507 31 0 3 chrX 166087375 166087703 -10886437 - AluY SINE Alu 0 327 1 21 57 0 0 chrX 166087708 166087743 -10886397 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chrX 166088104 166088126 -10886014 + AT_rich Low_complexity Low_complexity 1 22 0 960 279 126 20 chrX 166088159 166088843 -10885297 - L1ME2 LINE L1 -213 6020 5266 314 230 0 40 chrX 166088854 166088954 -10885186 - L1ME3 LINE L1 0 6162 6067 * 1386 212 83 50 chrX 166088951 166089097 -10885043 - L1ME2 LINE L1 -4128 2268 2128 3552 157 54 6 chrX 166089097 166089760 -10884380 - L1PB4 LINE L1 -5 6151 5457 1386 212 83 50 chrX 166089760 166090108 -10884032 - L1ME2 LINE L1 -4268 2128 1758 25 31 0 0 chrX 166090214 166090246 -10883894 + AT_rich Low_complexity Low_complexity 1 32 0 297 348 203 0 chrX 166090388 166090595 -10883545 + MIR SINE MIR 7 255 -7 254 353 58 13 chrX 166090850 166091006 -10883134 + MIR3 SINE MIR 45 207 -1 2301 81 7 3 chrX 166091113 166091411 -10882729 + AluSg1 SINE Alu 1 299 -10 2148 113 30 0 chrX 166092745 166093045 -10881095 - AluSx SINE Alu -3 309 1 326 290 110 21 chrX 166094762 166094907 -10879233 - MIR3 SINE MIR -6 202 45 1864 88 0 8 chrX 166095226 166095489 -10878651 + L1PB1 LINE L1 5890 6150 -1 202 216 0 0 chrX 166098259 166098296 -10875844 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 245 375 69 41 chrX 166098475 166098720 -10875420 - L2 LINE L2 -211 3061 2810 302 285 103 53 chrX 166098923 166099204 -10874936 - L2 LINE L2 -892 2422 2128 219 179 39 39 chrX 166099707 166099805 -10874335 + (TTTAA)n Simple_repeat Simple_repeat 1 98 0 218 254 45 15 chrX 166100005 166100072 -10874068 + MIR3 SINE MIR 86 154 -54 360 294 10 20 chrX 166100144 166100246 -10873894 + MER5A DNA MER1_type 63 163 -26 185 336 22 52 chrX 166101810 166101944 -10872196 + L2 LINE L2 2748 2877 -437 202 371 95 0 chrX 166102165 166102270 -10871870 + L2 LINE L2 3133 3247 -25 28 48 0 0 chrX 166102296 166102338 -10871802 + AT_rich Low_complexity Low_complexity 1 42 0 531 222 124 26 chrX 166102806 166102959 -10871181 + MER5B DNA MER1_type 7 174 -4 214 354 0 0 chrX 166102979 166103044 -10871096 - MER5A DNA MER1_type 0 189 125 1381 258 69 82 chrX 166103323 166103921 -10870219 + MLT1E LTR MaLR 3 592 -1 3057 96 12 0 chrX 166104959 166105364 -10868776 + MLT2A2 LTR ERVL 1 410 -43 182 114 0 105 chrX 166105471 166105576 -10868564 + (TA)n Simple_repeat Simple_repeat 2 95 0 335 60 40 0 chrX 166105610 166105660 -10868480 + MLT2A2 LTR ERVL 393 444 0 21 0 0 0 chrX 166106319 166106340 -10867800 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 166106479 166106500 -10867640 + AT_rich Low_complexity Low_complexity 1 21 0 214 125 23 45 chrX 166106668 166106756 -10867384 + (TTA)n Simple_repeat Simple_repeat 1 86 0 3556 69 4 0 chrX 166108182 166108633 -10865507 + MLT2A2 LTR ERVL 1 453 0 1329 239 161 40 chrX 166108635 166109132 -10865008 + MLT1E2 LTR MaLR 69 625 -1 2321 155 45 24 chrX 166110205 166110630 -10863510 + Tigger2a DNA MER2_type 1 434 0 2199 99 3 3 chrX 166111068 166111407 -10862733 + AluSx SINE Alu 1 339 0 221 310 28 0 chrX 166111734 166111805 -10862335 - MIR3 SINE MIR -28 180 108 28 61 0 0 chrX 166111920 166111969 -10862171 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chrX 166112025 166112046 -10862094 + AT_rich Low_complexity Low_complexity 1 21 0 376 248 18 26 chrX 166112615 166112728 -10861412 - ORSL DNA AcHobo -26 249 138 270 200 91 0 chrX 166112966 166113131 -10861009 + (TA)n Simple_repeat Simple_repeat 1 180 0 313 189 31 44 chrX 166113158 166113317 -10860823 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 231 238 30 20 chrX 166113366 166113467 -10860673 + (TATAA)n Simple_repeat Simple_repeat 5 106 0 202 123 74 31 chrX 166113467 166113630 -10860510 + (TA)n Simple_repeat Simple_repeat 1 170 0 200 141 44 30 chrX 166113690 166113825 -10860315 + (TATAA)n Simple_repeat Simple_repeat 1 137 0 1375 232 37 3 chrX 166114036 166114493 -10859647 + MLT1D LTR MaLR 1 503 -2 233 216 0 0 chrX 166114495 166114546 -10859594 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 13560 128 90 3 chrX 166114713 166116936 -10857204 + Tigger1 DNA MER2_type 2 2418 0 341 277 5 101 chrX 166117479 166117667 -10856473 + MER5B DNA MER1_type 3 172 -6 376 68 102 0 chrX 166118465 166118524 -10855616 + MADE1 DNA Mariner 13 77 -3 1002 164 41 75 chrX 166118524 166118792 -10855348 - L1MA8 LINE L1 -17 6274 6016 23 68 0 0 chrX 166119804 166119848 -10854292 + AT_rich Low_complexity Low_complexity 1 44 0 2024 126 7 13 chrX 166120115 166120417 -10853723 - AluSx SINE Alu -12 300 1 282 333 125 6 chrX 166121144 166121312 -10852828 - MIR SINE MIR -17 245 58 251 341 44 0 chrX 166121994 166122085 -10852055 + MIR3 SINE MIR 111 205 -3 2668 23 0 3 chrX 166122526 166122827 -10851313 + AluY SINE Alu 1 300 -11 553 135 11 28 chrX 166123133 166123302 -10850838 + GA-rich Low_complexity Low_complexity 1 166 0 3123 107 10 33 chrX 166123302 166123455 -10850685 + L1PB1 LINE L1 5652 5807 -371 471 78 0 0 chrX 166123455 166123519 -10850621 + (TG)n Simple_repeat Simple_repeat 2 65 0 3123 107 10 33 chrX 166123519 166123904 -10850236 + L1PB1 LINE L1 5807 6178 0 637 274 33 37 chrX 166124351 166124566 -10849574 + L2 LINE L2 1769 1982 -1332 22 35 0 0 chrX 166124945 166124974 -10849166 + AT_rich Low_complexity Low_complexity 1 29 0 223 217 0 67 chrX 166126358 166126418 -10847722 - L2 LINE L2 -1 3271 3216 191 231 0 13 chrX 166127927 166128005 -10846135 + GA-rich Low_complexity Low_complexity 1 77 0 558 101 21 69 chrX 166128673 166128862 -10845278 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 2395 67 0 16 chrX 166128967 166129298 -10844842 + AluY SINE Alu 1 311 0 186 379 0 0 chrX 166129302 166129368 -10844772 - L2 LINE L2 -340 2974 2909 1078 147 51 0 chrX 166129495 166129692 -10844448 - L1MA8 LINE L1 -1 6290 6084 28 71 0 0 chrX 166129930 166129986 -10844154 + AT_rich Low_complexity Low_complexity 1 56 0 1954 118 0 0 chrX 166130046 166130308 -10843832 + AluSx SINE Alu 6 267 -45 297 37 0 56 chrX 166130316 166130370 -10843770 + (CAAAA)n Simple_repeat Simple_repeat 2 52 0 1506 204 25 30 chrX 166130851 166131213 -10842927 + MLT1A1 LTR MaLR 1 360 -5 3923 120 15 3 chrX 166131710 166132303 -10841837 - LTR43 LTR ERV1 -2 600 1 1529 201 19 10 chrX 166132969 166133277 -10840863 + AluJo SINE Alu 2 312 0 2171 120 7 3 chrX 166134842 166135143 -10838997 - AluSx SINE Alu -10 302 1 355 327 59 40 chrX 166135356 166135659 -10838481 - L1ME4a LINE L1 -24 6097 5789 2083 214 50 60 chrX 166135834 166136452 -10837688 - LTR9 LTR ERV1 0 612 1 1967 165 66 55 chrX 166136662 166137117 -10837023 - LTR2B LTR ERV1 0 490 31 1554 0 0 0 chrX 166137626 166137793 -10836347 - AluYa5 SINE Alu -7 304 138 2022 136 3 0 chrX 166138082 166138390 -10835750 - AluSx SINE Alu -3 309 1 1002 266 100 59 chrX 166139576 166140434 -10833706 - L1MC5 LINE L1 -426 7535 6643 349 310 5 11 chrX 166141360 166141547 -10832593 - L1M4 LINE L1 -2192 3954 3769 2280 85 0 3 chrX 166141876 166142182 -10831958 - AluSq SINE Alu 0 307 3 28 29 0 0 chrX 166143905 166143940 -10830200 + AT_rich Low_complexity Low_complexity 1 35 0 243 0 0 0 chrX 166144173 166144200 -10829940 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 305 241 97 28 chrX 166144399 166144544 -10829596 - MLT1J2 LTR MaLR -225 225 71 345 82 0 0 chrX 166144770 166144819 -10829321 + (CA)n Simple_repeat Simple_repeat 1 49 0 2288 204 38 32 chrX 166145267 166145822 -10828318 + MER74A LTR ERVL 1 558 0 338 290 26 16 chrX 166145895 166146088 -10828052 + MERVL LTR ERVL 3737 3931 -1554 26 50 0 0 chrX 166146170 166146210 -10827930 + AT_rich Low_complexity Low_complexity 1 40 0 1664 183 0 32 chrX 166146210 166146522 -10827618 - AluJo SINE Alu -10 302 1 22 0 0 0 chrX 166146576 166146598 -10827542 + AT_rich Low_complexity Low_complexity 1 22 0 407 210 136 2 chrX 166146969 166147142 -10826998 + MER8 DNA MER2_type 1 239 0 1632 189 20 30 chrX 166147161 166147558 -10826582 + L1MC2 LINE L1 5944 6336 -8 198 317 48 19 chrX 166149109 166149205 -10824935 + L2 LINE L2 1607 1699 -1615 342 0 0 0 chrX 166149205 166149243 -10824897 + (CA)n Simple_repeat Simple_repeat 1 38 0 198 317 48 19 chrX 166149243 166149354 -10824786 + L2 LINE L2 1699 1820 -1494 5149 94 18 0 chrX 166149446 166150171 -10823969 + L1PA11 LINE L1 5435 6172 -2 29 0 0 0 chrX 166150298 166150327 -10823813 + AT_rich Low_complexity Low_complexity 1 29 0 1915 130 7 32 chrX 166150604 166150912 -10823228 + AluJo SINE Alu 1 300 -12 2316 88 3 3 chrX 166152437 166152731 -10821409 - AluSg SINE Alu -16 294 1 1697 234 67 49 chrX 166153969 166154189 -10819951 + MLT1E2 LTR MaLR 1 216 -410 2230 106 3 19 chrX 166154189 166154501 -10819639 + AluSg SINE Alu 1 307 -3 1697 234 67 49 chrX 166154501 166154894 -10819246 + MLT1E2 LTR MaLR 216 625 -1 2375 136 54 2 chrX 166154907 166155312 -10818828 + MSTB LTR MaLR 1 426 0 908 223 5 0 chrX 166155460 166155644 -10818496 + MER58A DNA MER1_type 37 221 -3 1624 199 75 27 chrX 166156411 166156754 -10817386 + L1MC3 LINE L1 7315 7685 -100 3080 97 14 0 chrX 166156754 166157199 -10816941 + L1PA13 LINE L1 5712 6162 -1 1624 199 75 27 chrX 166157199 166157298 -10816842 + L1MC3 LINE L1 7685 7778 -7 242 274 116 21 chrX 166157760 166157855 -10816285 + MIR3 SINE MIR 82 185 -23 1209 169 39 11 chrX 166158273 166158552 -10815588 + MER33 DNA MER1_type 1 287 -37 679 212 49 44 chrX 166164519 166164722 -10809418 - MER3 DNA MER1_type -5 204 1 24 0 0 0 chrX 166165406 166165430 -10808710 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chrX 166165487 166165509 -10808631 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chrX 166167258 166167281 -10806859 + AT_rich Low_complexity Low_complexity 1 23 0 2010 137 4 0 chrX 166167393 166167671 -10806469 - AluSq SINE Alu -34 279 1 307 62 0 141 chrX 166168205 166168269 -10805871 - MLT2B1 LTR ERVL 0 520 466 825 75 50 15 chrX 166168276 166168598 -10805542 + (TA)n Simple_repeat Simple_repeat 1 333 0 309 292 10 10 chrX 166168627 166168723 -10805417 + L2 LINE L2 2554 2649 -665 213 247 12 49 chrX 166169073 166169154 -10804986 + L2 LINE L2 3158 3235 -78 22 94 0 0 chrX 166169173 166169237 -10804903 + AT_rich Low_complexity Low_complexity 1 64 0 431 100 114 0 chrX 166169533 166169603 -10804537 - MADE1 DNA Mariner -2 78 1 2405 70 0 3 chrX 166170869 166171171 -10802969 + AluY SINE Alu 1 301 -10 253 262 19 160 chrX 166171473 166171679 -10802461 + MIR SINE MIR 49 225 -37 1232 201 16 12 chrX 166171683 166171932 -10802208 - AluJo SINE Alu -8 304 55 669 336 47 14 chrX 166171932 166172567 -10801573 + HERV17 LTR ERV1 3304 4630 -1114 440 342 35 14 chrX 166172804 166173175 -10800965 + HERV17 LTR ERV1 4572 4950 -2806 492 315 14 60 chrX 166173510 166174110 -10800030 + HERV17 LTR ERV1 4549 6482 -1884 1502 56 0 0 chrX 166174505 166174700 -10799440 - THE1A LTR MaLR -160 195 1 707 167 6 39 chrX 166174704 166174860 -10799280 - L1M1 LINE L1 -7397 168 18 345 91 36 0 chrX 166174874 166174929 -10799211 - L1 LINE L1 -1379 4767 4711 1454 163 33 7 chrX 166174937 166175213 -10798927 - Tigger1 DNA MER2_type -2135 283 1 3877 185 44 13 chrX 166175307 166175830 -10798310 + L1MA4A LINE L1 4492 4998 -1307 1924 138 3 35 chrX 166175830 166176141 -10797999 + AluSx SINE Alu 1 301 -11 3877 185 44 13 chrX 166176141 166176757 -10797383 + L1MA4A LINE L1 4998 5699 -606 195 42 0 0 chrX 166176757 166176781 -10797359 + (GA)n Simple_repeat Simple_repeat 1 24 0 3877 185 44 13 chrX 166176781 166177145 -10796995 + L1MA4A LINE L1 5699 6050 -255 296 217 36 0 chrX 166177138 166177221 -10796919 + L1MB4 LINE L1 6094 6179 -1 * 1166 189 23 11 chrX 166178367 166178822 -10795318 - L1M2 LINE L1 -611 5689 5158 338 136 11 91 chrX 166178822 166178910 -10795230 + MLT2C1 LTR ERVL 260 340 -57 21 36 0 0 chrX 166178948 166178976 -10795164 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chrX 166178976 166178999 -10795141 + (CA)n Simple_repeat Simple_repeat 2 24 0 5458 140 5 5 chrX 166180861 166181748 -10792392 - Tigger1 DNA MER2_type -466 1952 1066 233 56 0 28 chrX 166182003 166182039 -10792101 + (CCCCCT)n Simple_repeat Simple_repeat 2 36 0 2308 102 51 22 chrX 166182040 166182547 -10791593 + pTR5 LTR ERV1 1196 2029 -409 303 221 0 0 chrX 166182547 166182624 -10791516 + LTR30 LTR ERV1 548 624 -98 1400 95 29 2 chrX 166182624 166182856 -10791284 + pTR5 LTR ERV1 49 392 -2046 324 0 0 0 chrX 166183175 166183211 -10790929 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 100 0 0 chrX 166184215 166184245 -10789895 + (TG)n Simple_repeat Simple_repeat 2 31 0 2264 128 0 0 chrX 166184280 166184592 -10789548 - AluJb SINE Alu 0 312 1 707 191 26 37 chrX 166185379 166185568 -10788572 - MER53 DNA DNA -2 187 1 291 291 73 22 chrX 166186141 166186320 -10787820 + LTR33A LTR ERVL 303 490 -33 2203 115 3 26 chrX 166188161 166188474 -10785666 - AluSx SINE Alu -6 306 1 2724 115 64 2 chrX 166189067 166189503 -10784637 - MER4C LTR ERV1 0 465 3 2284 143 18 75 chrX 166189629 166190083 -10784057 + MSTC LTR MaLR 1 428 0 274 254 71 76 chrX 166190221 166190445 -10783695 - L2 LINE L2 -188 3084 2862 1508 186 0 0 chrX 166191238 166191490 -10782650 + AluJo SINE Alu 1 252 -60 26 0 0 0 chrX 166191616 166191642 -10782498 + AT_rich Low_complexity Low_complexity 1 26 0 1734 131 22 34 chrX 166191659 166191979 -10782161 + THE1C LTR MaLR 1 316 -59 30 0 0 0 chrX 166192605 166192635 -10781505 + AT_rich Low_complexity Low_complexity 1 30 0 1093 112 0 0 chrX 166192635 166192778 -10781362 - AluSq/x SINE Alu -169 143 1 218 336 18 26 chrX 166193059 166193172 -10780968 - MIR SINE MIR -101 161 50 3169 137 8 6 chrX 166193397 166193908 -10780232 + MER41E LTR ERV1 1 512 0 2512 152 27 12 chrX 166194080 166194559 -10779581 + LTR29 LTR ERV1 137 622 0 1118 113 0 30 chrX 166196157 166196350 -10777790 + AluSg/x SINE Alu 117 304 0 213 208 0 0 chrX 166196656 166196709 -10777431 + A-rich Low_complexity Low_complexity 4 56 0 463 236 164 7 chrX 166196709 166196849 -10777291 - MLT1A2 LTR MaLR -23 351 190 255 79 0 0 chrX 166196864 166196902 -10777238 + (GA)n Simple_repeat Simple_repeat 1 38 0 2943 76 40 45 chrX 166196954 166197357 -10776783 + MLT2A1 LTR ERVL 1 403 -41 180 0 0 0 chrX 166197357 166197377 -10776763 + (TA)n Simple_repeat Simple_repeat 2 21 0 2943 76 40 45 chrX 166197377 166197419 -10776721 + MLT2A1 LTR ERVL 403 444 0 3286 59 5 0 chrX 166197419 166197845 -10776295 + HERVL-A1 LTR ERVL 1 428 -5226 1275 223 12 22 chrX 166198175 166198498 -10775642 - MER7A DNA MER2_type -22 324 7 216 220 20 0 chrX 166198674 166198724 -10775416 + (TATG)n Simple_repeat Simple_repeat 4 54 0 1395 205 3 24 chrX 166198833 166199126 -10775014 + AluJb SINE Alu 6 292 -20 370 323 121 46 chrX 166199199 166199878 -10774262 - L1M4 LINE L1 -1318 4828 4099 4231 103 13 0 chrX 166199887 166200500 -10773640 - L1PA13 LINE L1 -1 6162 5542 3122 94 0 33 chrX 166200501 166200960 -10773180 + MLT2A1 LTR ERVL 1 444 0 557 119 40 71 chrX 166200961 166201087 -10773053 - MLT1A2 LTR MaLR -251 123 2 1806 179 0 14 chrX 166202608 166202905 -10771235 - AluJb SINE Alu -19 293 1 272 178 41 0 chrX 166203212 166203285 -10770855 + (TA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chrX 166204523 166204547 -10769593 + AT_rich Low_complexity Low_complexity 1 24 0 1322 277 72 14 chrX 166205336 166205823 -10768317 - MLT2B2 LTR ERVL 0 515 1 271 248 142 92 chrX 166205840 166205981 -10768159 - MIR SINE MIR -114 148 1 911 218 29 4 chrX 166206964 166207207 -10766933 + L1 LINE L1 5024 5272 -874 198 0 0 0 chrX 166207242 166207264 -10766876 + (GA)n Simple_repeat Simple_repeat 2 23 0 201 74 0 0 chrX 166207291 166207318 -10766822 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2322 88 14 0 chrX 166208199 166208496 -10765644 + AluSx SINE Alu 1 301 -11 204 252 9 45 chrX 166208941 166209052 -10765088 + A-rich Low_complexity Low_complexity 4 110 0 341 309 61 44 chrX 166209110 166209770 -10764370 + L1M4 LINE L1 2248 2918 -3228 21 0 0 0 chrX 166209869 166209890 -10764250 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chrX 166209942 166209988 -10764152 + (TG)n Simple_repeat Simple_repeat 1 46 0 264 253 13 0 chrX 166210052 166210131 -10764009 + L1MC5 LINE L1 7809 7888 -73 436 332 89 45 chrX 166210273 166210677 -10763463 - L1MC4a LINE L1 -1866 5942 5521 3951 97 2 25 chrX 166211116 166211742 -10762398 + L1PB1 LINE L1 5575 6151 0 4612 115 16 18 chrX 166211968 166212379 -10761761 + L1PB1 LINE L1 5383 5793 -358 180 0 0 0 chrX 166212379 166212399 -10761741 + (TA)n Simple_repeat Simple_repeat 2 21 0 4612 115 16 18 chrX 166212399 166212758 -10761382 + L1PB1 LINE L1 5793 6151 0 29 0 0 0 chrX 166212758 166212787 -10761353 + AT_rich Low_complexity Low_complexity 1 29 0 821 137 8 15 chrX 166213258 166213389 -10760751 + FLAM_C SINE Alu 1 130 -13 27 0 0 0 chrX 166213391 166213418 -10760722 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chrX 166214498 166214533 -10759607 + AT_rich Low_complexity Low_complexity 1 35 0 1050 214 42 5 chrX 166214755 166214970 -10759170 + MER58A DNA MER1_type 2 224 0 782 186 36 78 chrX 166214981 166215103 -10759037 - MER5A DNA MER1_type -3 186 73 2492 69 3 0 chrX 166215103 166215407 -10758733 + AluY SINE Alu 1 305 -6 782 186 36 78 chrX 166215407 166215477 -10758663 - MER5A DNA MER1_type -116 73 2 2316 109 0 0 chrX 166215632 166215935 -10758205 - AluSx SINE Alu -9 303 1 2317 70 17 10 chrX 166216453 166216752 -10757388 - AluY SINE Alu -10 301 1 5446 152 30 75 chrX 166216841 166216898 -10757242 + Tigger3b DNA MER2_type 1 59 -2969 7799 30 2 0 chrX 166216898 166217793 -10756347 - MER11D LTR ERVK 0 897 1 5446 152 30 75 chrX 166217793 166217927 -10756213 + Tigger3b DNA MER2_type 59 197 -2831 2058 117 4 0 chrX 166217927 166218228 -10755912 + AluSx SINE Alu 3 304 0 5446 152 30 75 chrX 166218228 166219322 -10754818 + Tigger3b DNA MER2_type 197 1231 0 936 180 0 6 chrX 166220489 166220650 -10753490 - AluJb SINE Alu -9 303 144 2354 169 31 79 chrX 166220807 166221415 -10752725 - L1MC3 LINE L1 -8 7777 7199 273 262 33 25 chrX 166221724 166221846 -10752294 - MLT1J LTR MaLR 0 511 389 239 287 28 49 chrX 166222046 166222189 -10751951 - MLT1J LTR MaLR -350 161 22 762 330 18 29 chrX 166222219 166222674 -10751466 - ERVL LTR ERVL -3199 2565 2116 1902 189 87 17 chrX 166225647 166226106 -10748034 + MLT1D LTR MaLR 1 491 -14 2431 149 115 39 chrX 166226108 166226847 -10747293 + pTR5 LTR ERV1 743 2020 -418 367 233 10 0 chrX 166226847 166226950 -10747190 + LTR30 LTR ERV1 539 642 -80 2328 76 0 3 chrX 166226950 166227278 -10746862 + pTR5 LTR ERV1 66 392 -2046 1362 162 61 171 chrX 166227747 166228272 -10745868 + MLT1C LTR MaLR 1 467 0 1307 162 30 34 chrX 166228689 166229017 -10745123 - pTR5 LTR ERV1 -1370 1068 742 899 149 12 25 chrX 166229584 166229745 -10744395 + AluJb SINE Alu 144 302 -10 486 253 11 39 chrX 166230264 166230378 -10743762 + MER96B DNA MER1_type? 5 115 -302 2141 92 21 0 chrX 166230378 166230686 -10743454 + AluSq SINE Alu 1 314 0 486 253 11 39 chrX 166230686 166230748 -10743392 + MER96B DNA MER1_type? 115 177 -240 488 315 21 31 chrX 166230790 166231076 -10743064 + MER69 DNA AcHobo 76 358 -2168 1705 178 166 25 chrX 166231079 166231102 -10743038 - MLT1D LTR MaLR 0 505 487 2275 132 91 8 chrX 166231102 166231497 -10742643 + MSTA LTR MaLR 1 428 0 1705 178 166 25 chrX 166231497 166231912 -10742228 - MLT1D LTR MaLR -18 487 5 563 304 75 15 chrX 166231917 166232118 -10742022 + MER69 DNA AcHobo 358 570 -656 * 860 233 96 12 chrX 166232116 166232244 -10741896 + MER69 DNA AcHobo 2013 2129 -397 1967 124 0 55 chrX 166232244 166232551 -10741589 - AluSx SINE Alu -22 290 1 860 233 96 12 chrX 166232551 166232838 -10741302 + MER69 DNA AcHobo 2129 2463 -63 2213 117 0 7 chrX 166232840 166233148 -10740992 + AluSx SINE Alu 1 306 -6 1078 97 5 32 chrX 166234112 166234298 -10739842 + L1MA5A LINE L1 6114 6294 -3 1593 194 53 0 chrX 166234466 166234749 -10739391 + AluJb SINE Alu 1 298 -14 25 0 0 0 chrX 166234791 166234816 -10739324 + AT_rich Low_complexity Low_complexity 1 25 0 1565 191 37 7 chrX 166237678 166237972 -10736168 + AluJo SINE Alu 1 303 -9 235 260 27 55 chrX 166239204 166239277 -10734863 + MIR SINE MIR 23 93 -115 1428 241 34 61 chrX 166239466 166239940 -10734200 - MLT2B1 LTR ERVL -59 461 1 235 272 41 71 chrX 166241107 166241368 -10732772 - L2 LINE L2 -271 3042 2794 2567 97 8 24 chrX 166241894 166242264 -10731876 + THE1B LTR MaLR 1 364 0 1718 147 6 22 chrX 166243169 166243482 -10730658 + L1MB3 LINE L1 5869 6176 -7 463 201 29 0 chrX 166243563 166243737 -10730403 + (TA)n Simple_repeat Simple_repeat 2 180 0 324 83 117 167 chrX 166244123 166244243 -10729897 - MER34C LTR ERV1 -1 584 451 1189 214 61 19 chrX 166244255 166244391 -10729749 - MER4D LTR ERV1 -1 902 773 501 150 0 0 chrX 166244391 166244471 -10729669 + MADE1 DNA Mariner 1 80 0 1189 214 61 19 chrX 166244471 166244694 -10729446 - MER4D LTR ERV1 -130 773 528 1569 170 7 0 chrX 166244706 166244989 -10729151 - MER49 LTR ERV1 -638 285 1 1164 189 65 89 chrX 166244989 166245220 -10728920 - MER34C LTR ERV1 -122 463 245 2130 118 0 10 chrX 166245220 166245517 -10728623 + AluSc SINE Alu 1 294 -15 1164 189 65 89 chrX 166245517 166245713 -10728427 - MER34C LTR ERV1 -340 245 46 860 264 18 0 chrX 166246502 166246722 -10727418 - MER58A DNA MER1_type 0 224 1 3262 149 98 25 chrX 166246969 166247702 -10726438 - LTR48 LTR ERV1 0 787 1 4125 243 71 30 chrX 166247744 166249241 -10724899 - L1MCa LINE L1 -1551 4875 3300 2408 104 0 0 chrX 166249241 166249548 -10724592 - AluSg SINE Alu -3 307 1 4125 243 71 30 chrX 166249548 166249739 -10724401 - L1MCa LINE L1 -3126 3300 3118 1233 243 112 19 chrX 166249735 166250252 -10723888 - L1MCa LINE L1 -3639 2787 2319 * 2317 106 3 0 chrX 166250252 166250564 -10723576 - AluSp SINE Alu 0 313 1 1233 243 112 19 chrX 166250564 166250901 -10723239 - L1MCa LINE L1 -4107 2319 1851 23 33 0 0 chrX 166251513 166251543 -10722597 + AT_rich Low_complexity Low_complexity 1 30 0 295 297 68 16 chrX 166251661 166251853 -10722287 + Charlie2 DNA MER1_type 2494 2695 -167 356 300 0 0 chrX 166251898 166252028 -10722112 + L1MC/D LINE L1 3699 3828 -2318 1092 70 0 0 chrX 166252260 166252389 -10721751 + AluSq/x SINE Alu 1 129 -183 336 24 0 0 chrX 166252389 166252430 -10721710 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 438 296 39 30 chrX 166252433 166252666 -10721474 + L1MC/D LINE L1 4309 4543 -1603 2162 112 24 7 chrX 166252671 166252967 -10721173 - AluSg SINE Alu -9 301 1 346 188 0 0 chrX 166253117 166253181 -10720959 + MER77 LTR ERV1 77 140 -465 1136 203 18 0 chrX 166253301 166253518 -10720622 + AluJb SINE Alu 71 291 -21 450 0 0 0 chrX 166253525 166253575 -10720565 + (CA)n Simple_repeat Simple_repeat 2 51 0 707 292 70 27 chrX 166253575 166253882 -10720258 + MER77 LTR ERV1 309 604 -1 287 310 86 5 chrX 166254039 166254236 -10719904 + L1MC/D LINE L1 4804 5016 -1130 404 260 161 31 chrX 166254592 166254756 -10719384 + L1MC/D LINE L1 5427 5621 -2187 360 0 0 0 chrX 166254756 166254796 -10719344 + (CA)n Simple_repeat Simple_repeat 1 40 0 404 260 161 31 chrX 166254796 166254823 -10719317 + L1MC/D LINE L1 5621 5643 -2165 1798 148 56 36 chrX 166254909 166255267 -10718873 + MER47A DNA MER2_type 2 366 0 24 0 0 0 chrX 166255479 166255503 -10718637 + AT_rich Low_complexity Low_complexity 1 24 0 1773 52 5 0 chrX 166255854 166256064 -10718076 + AluSp SINE Alu 89 299 -14 318 290 114 50 chrX 166256887 166257115 -10717025 + MIR SINE MIR 3 242 -20 213 279 0 0 chrX 166257117 166257160 -10716980 + polypyrimidine Low_complexity Low_complexity 2 44 0 180 0 0 0 chrX 166258618 166258638 -10715502 + (A)n Simple_repeat Simple_repeat 1 20 0 297 51 0 0 chrX 166259146 166259185 -10714955 + (TG)n Simple_repeat Simple_repeat 2 40 0 2703 94 6 0 chrX 166259309 166259671 -10714469 - THE1B LTR MaLR 0 364 1 249 159 0 0 chrX 166260192 166260236 -10713904 + (TA)n Simple_repeat Simple_repeat 2 45 0 1023 194 32 19 chrX 166260938 166261154 -10712986 - MER20 DNA MER1_type 0 219 1 356 321 0 43 chrX 166261228 166261368 -10712772 - L2 LINE L2 -1 3271 3138 212 362 46 40 chrX 166261445 166261597 -10712543 - L2 LINE L2 -556 2758 2606 408 60 194 0 chrX 166262080 166262147 -10711993 - MADE1 DNA Mariner 0 80 1 320 85 0 0 chrX 166262171 166262218 -10711922 - MADE1 DNA Mariner -33 47 1 311 49 0 0 chrX 166262246 166262287 -10711853 - MADE1 DNA Mariner -39 41 1 374 175 25 8 chrX 166263075 166263195 -10710945 + (TAGA)n Simple_repeat Simple_repeat 4 125 0 347 238 212 58 chrX 166263323 166263512 -10710628 - L2 LINE L2 -2 3311 3094 2183 121 18 52 chrX 166263610 166263998 -10710142 + THE1C LTR MaLR 1 375 0 461 292 50 40 chrX 166264419 166264621 -10709519 - MIR SINE MIR -48 214 11 23 33 0 0 chrX 166264930 166264960 -10709180 + AT_rich Low_complexity Low_complexity 1 30 0 263 259 30 38 chrX 166265249 166265380 -10708760 + MER103 DNA DNA 27 156 -10 305 219 27 17 chrX 166265519 166265665 -10708475 + MER53 DNA DNA 1 189 0 216 0 0 0 chrX 166265975 166265999 -10708141 + (T)n Simple_repeat Simple_repeat 1 24 0 2349 96 3 0 chrX 166268110 166268411 -10705729 - AluSp SINE Alu -11 302 1 212 257 14 14 chrX 166268546 166268620 -10705520 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 489 249 17 33 chrX 166269349 166269530 -10704610 + LTR41 LTR ERVL 1 178 -595 189 0 0 0 chrX 166270013 166270034 -10704106 + (A)n Simple_repeat Simple_repeat 1 21 0 1852 159 50 19 chrX 166270230 166270594 -10703546 - THE1C LTR MaLR 0 375 1 560 319 115 65 chrX 166271396 166271547 -10702593 - L2 LINE L2 -607 2707 2565 2212 100 0 20 chrX 166271547 166271848 -10702292 + AluSg SINE Alu 1 295 -15 560 319 115 65 chrX 166271848 166272192 -10701948 - L2 LINE L2 -749 2565 2187 439 200 248 21 chrX 166272372 166272517 -10701623 - MER5B DNA MER1_type 0 178 1 242 391 47 19 chrX 166273167 166273382 -10700758 - L2 LINE L2 -625 2689 2469 1463 224 72 64 chrX 166273501 166274002 -10700138 - MLT1D LTR MaLR 0 505 1 258 203 14 27 chrX 166275177 166275241 -10698899 + (TA)n Simple_repeat Simple_repeat 2 66 -8 2317 121 8 85 chrX 166275241 166275711 -10698429 - Tigger2a DNA MER2_type 0 434 1 258 203 14 27 chrX 166275711 166275720 -10698420 + (TA)n Simple_repeat Simple_repeat 66 74 0 1515 242 118 28 chrX 166275777 166276318 -10697822 + MLT1E LTR MaLR 4 593 0 26 30 0 0 chrX 166276681 166276714 -10697426 + AT_rich Low_complexity Low_complexity 1 33 0 1470 224 78 21 chrX 166277277 166277710 -10696430 - MLT1D LTR MaLR -1 504 47 2313 104 13 3 chrX 166277854 166278161 -10695979 + AluSx SINE Alu 1 310 -2 1979 174 21 19 chrX 166278852 166279226 -10694914 + THE1C LTR MaLR 1 375 0 27 0 0 0 chrX 166279295 166279322 -10694818 + AT_rich Low_complexity Low_complexity 1 27 0 1656 147 35 35 chrX 166279322 166279690 -10694450 + L1MA7 LINE L1 5882 6249 -42 251 291 0 47 chrX 166280378 166280464 -10693676 - L2 LINE L2 -11 3261 3180 2259 118 0 0 chrX 166280565 166280871 -10693269 + AluSx SINE Alu 1 306 -6 2073 190 24 80 chrX 166281279 166281854 -10692286 - MLT2B3 LTR ERVL -10 544 2 932 302 143 33 chrX 166283365 166284206 -10689934 - L2 LINE L2 -3 3310 2385 507 354 56 24 chrX 166284695 166285068 -10689072 + L2 LINE L2 133 517 -2797 23 0 0 0 chrX 166285191 166285214 -10688926 + AT_rich Low_complexity Low_complexity 1 23 0 1013 174 138 120 chrX 166285294 166285438 -10688702 - MLT1E2 LTR MaLR -116 510 370 1957 132 4 0 chrX 166285438 166285718 -10688422 - AluSx SINE Alu -30 282 2 1013 174 138 120 chrX 166285718 166286016 -10688124 - MLT1E2 LTR MaLR -256 370 60 1039 103 6 12 chrX 166287590 166287755 -10686385 - Charlie3 DNA MER1_type -4 2706 2543 215 143 24 0 chrX 166290215 166290257 -10683883 + (CA)n Simple_repeat Simple_repeat 2 44 0 195 129 0 0 chrX 166290374 166290405 -10683735 + (TG)n Simple_repeat Simple_repeat 2 32 0 32 0 0 0 chrX 166291816 166291848 -10682292 + AT_rich Low_complexity Low_complexity 1 32 0 2113 119 0 23 chrX 166292117 166292427 -10681713 + AluSx SINE Alu 1 303 -9 186 43 0 0 chrX 166292824 166292847 -10681293 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 419 223 17 29 chrX 166292890 166293065 -10681075 + (TA)n Simple_repeat Simple_repeat 1 173 0 239 284 0 29 chrX 166293036 166293138 -10681002 + (CATA)n Simple_repeat Simple_repeat 2 100 0 * 813 209 115 30 chrX 166293213 166293447 -10680693 - MLT2F LTR ERVL -43 620 367 626 259 113 32 chrX 166293529 166293873 -10680267 + MLT1J LTR MaLR 107 478 -33 305 276 29 11 chrX 166296364 166296457 -10677683 + (TA)n Simple_repeat Simple_repeat 2 104 -74 1649 181 3 3 chrX 166296457 166296769 -10677371 + AluJo SINE Alu 1 312 0 305 276 29 11 chrX 166296769 166296846 -10677294 + (TA)n Simple_repeat Simple_repeat 104 178 0 187 225 0 17 chrX 166297313 166297433 -10676707 + (TA)n Simple_repeat Simple_repeat 2 119 0 30 45 0 0 chrX 166297444 166297488 -10676652 + AT_rich Low_complexity Low_complexity 1 44 0 208 176 20 0 chrX 166297520 166297571 -10676569 + (TA)n Simple_repeat Simple_repeat 2 53 0 409 56 0 28 chrX 166298156 166298227 -10675913 + (TG)n Simple_repeat Simple_repeat 1 69 0 802 280 31 14 chrX 166298724 166299017 -10675123 + LTR16C LTR ERVL 163 460 -31 2135 83 11 7 chrX 166299483 166299788 -10674352 - AluSg1 SINE Alu 0 306 1 1656 159 26 29 chrX 166299812 166300121 -10674019 - AluJb SINE Alu -4 308 1 651 329 133 23 chrX 166300178 166300749 -10673391 + L3 LINE CR1 806 1439 -138 253 286 89 70 chrX 166301987 166302246 -10671894 - MARNA DNA Mariner -42 544 281 2360 85 0 22 chrX 166302266 166302585 -10671555 - AluSx SINE Alu 0 312 1 3276 120 27 27 chrX 166302606 166302809 -10671331 + L1PB4 LINE L1 5593 5795 -361 234 0 0 0 chrX 166302809 166302835 -10671305 + (CA)n Simple_repeat Simple_repeat 2 27 0 3276 120 27 27 chrX 166302835 166303182 -10670958 + L1PB4 LINE L1 5794 6143 -13 2164 124 20 3 chrX 166303537 166303893 -10670247 - MER1A DNA MER1_type -167 362 1 408 55 0 0 chrX 166304137 166304192 -10669948 + (TG)n Simple_repeat Simple_repeat 2 56 0 340 258 0 21 chrX 166304200 166304293 -10669847 - L1MC4 LINE L1 -1339 6703 6613 219 204 0 0 chrX 166304297 166304346 -10669794 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 227 215 31 0 chrX 166304350 166304415 -10669725 - L1MC4 LINE L1 -1339 6703 6637 267 216 0 14 chrX 166304440 166304514 -10669626 + (TA)n Simple_repeat Simple_repeat 2 74 0 2227 124 0 0 chrX 166304716 166305014 -10669126 - AluSx SINE Alu -11 301 4 231 299 0 0 chrX 166305290 166305377 -10668763 + L1MC5 LINE L1 7711 7797 -164 1805 183 14 6 chrX 166305379 166305735 -10668405 - MLT1A1 LTR MaLR -6 359 1 294 196 78 29 chrX 166305742 166305844 -10668296 + L1MC5 LINE L1 7802 7908 -53 261 382 32 8 chrX 166306044 166306167 -10667973 - L2 LINE L2 -23 3249 3124 1922 183 0 0 chrX 166306605 166306917 -10667223 - AluJb SINE Alu 0 312 1 2520 74 0 0 chrX 166307368 166307677 -10666463 + AluY SINE Alu 1 309 -2 650 45 22 0 chrX 166307677 166307766 -10666374 + (GGAA)n Simple_repeat Simple_repeat 2 92 0 1787 165 4 4 chrX 166307784 166308063 -10666077 + AluJb SINE Alu 1 279 -33 203 0 37 0 chrX 166308064 166308091 -10666049 + (GAAAA)n Simple_repeat Simple_repeat 4 31 0 396 161 0 0 chrX 166308091 166308172 -10665968 + GA-rich Low_complexity Low_complexity 1 81 0 752 177 0 8 chrX 166308272 166308402 -10665738 - FLAM_A SINE Alu -4 129 1 885 182 0 41 chrX 166308493 166308663 -10665477 - FRAM SINE Alu -3 163 1 5275 98 5 9 chrX 166309107 166309905 -10664235 - L1PA13 LINE L1 -1 6162 5368 213 39 0 0 chrX 166310076 166310102 -10664038 + (TG)n Simple_repeat Simple_repeat 1 26 0 227 263 151 36 chrX 166310792 166310933 -10663207 - MIR SINE MIR -67 141 18 311 281 80 72 chrX 166311139 166311787 -10662353 + L1MEd LINE L1 605 1257 -4862 335 289 52 46 chrX 166311923 166312117 -10662023 + L1MEd LINE L1 3104 3298 -2831 617 192 0 8 chrX 166312376 166312506 -10661634 - MER3 DNA MER1_type -10 199 71 23 0 0 0 chrX 166312811 166312834 -10661306 + AT_rich Low_complexity Low_complexity 1 23 0 1801 113 27 0 chrX 166313672 166313964 -10660176 + L1MA2 LINE L1 6005 6304 0 29 0 0 0 chrX 166313964 166313993 -10660147 + AT_rich Low_complexity Low_complexity 1 29 0 723 180 0 0 chrX 166314057 166314179 -10659961 - Tigger3(Golem) DNA MER2_type -2 3027 2906 2579 160 31 75 chrX 166314182 166314768 -10659372 - Tigger3b DNA MER2_type -669 562 3 294 125 0 0 chrX 166314772 166314820 -10659320 + (TAGG)n Simple_repeat Simple_repeat 1 48 0 287 232 12 0 chrX 166315109 166315191 -10658949 - L1M4 LINE L1 -2187 3959 3877 189 107 0 0 chrX 166315224 166315252 -10658888 + (CA)n Simple_repeat Simple_repeat 2 29 0 27 62 0 0 chrX 166315430 166315478 -10658662 + AT_rich Low_complexity Low_complexity 1 48 0 336 294 28 73 chrX 166318115 166318292 -10655848 - MIR3 SINE MIR -3 205 37 240 35 0 0 chrX 166318376 166318405 -10655735 + (TTTG)n Simple_repeat Simple_repeat 3 31 0 381 198 10 20 chrX 166318685 166318786 -10655354 + LTR1 LTR ERV1 1 100 -685 263 360 80 8 chrX 166319419 166319544 -10654596 + L2 LINE L2 3139 3272 0 1676 141 26 15 chrX 166319895 166320191 -10653949 + AluJb SINE Alu 12 310 0 218 325 50 75 chrX 166320272 166320432 -10653708 - MIR3 SINE MIR -21 187 32 188 362 0 0 chrX 166320524 166320582 -10653558 - L2 LINE L2 0 3313 3256 2198 117 0 13 chrX 166320992 166321291 -10652849 + AluSq SINE Alu 5 299 -14 327 169 0 17 chrX 166322273 166322332 -10651808 - MER20 DNA MER1_type -160 59 2 540 251 58 29 chrX 166322443 166322614 -10651526 - FRAM SINE Alu 0 176 1 705 167 128 28 chrX 166322821 166322993 -10651147 + MLT2B2 LTR ERVL 321 481 -34 924 70 14 14 chrX 166322993 166323136 -10651004 + (TCTA)n Simple_repeat Simple_repeat 3 145 0 705 167 128 28 chrX 166323136 166323175 -10650965 + MLT2B2 LTR ERVL 481 515 0 2380 106 33 22 chrX 166324148 166324508 -10649632 - THE1B LTR MaLR 0 364 1 2450 99 0 0 chrX 166325489 166325802 -10648338 - AluSq SINE Alu 0 313 1 369 214 0 0 chrX 166325927 166326025 -10648115 + (TCCA)n Simple_repeat Simple_repeat 4 101 0 952 221 9 40 chrX 166326795 166327017 -10647123 - AluJo SINE Alu -11 301 87 2363 107 30 30 chrX 166327557 166327921 -10646219 - THE1B LTR MaLR 0 364 1 1330 172 0 5 chrX 166328850 166329054 -10645086 - AluJb SINE Alu -23 289 87 3005 169 29 50 chrX 166329090 166329806 -10644334 - LTR1 LTR ERV1 0 785 85 907 217 74 10 chrX 166331028 166331231 -10642909 - AluJo SINE Alu -94 218 3 337 262 181 20 chrX 166332211 166332360 -10641780 + MER5B DNA MER1_type 6 178 0 2036 214 120 53 chrX 166334146 166334348 -10639792 + L1MC4 LINE L1 6991 7178 -864 1630 170 14 17 chrX 166334348 166334636 -10639504 + AluJo SINE Alu 26 312 0 2036 214 120 53 chrX 166334636 166335236 -10638904 + L1MC4 LINE L1 7178 7846 -196 925 176 39 5 chrX 166335973 166336177 -10637963 + MER20B DNA MER1_type 1 211 -8 2009 141 7 0 chrX 166337035 166337333 -10636807 + AluSq SINE Alu 1 300 -13 295 309 84 15 chrX 166338028 166338183 -10635957 - MIR SINE MIR -68 140 18 24 35 0 53 chrX 166338905 166338962 -10635178 + AT_rich Low_complexity Low_complexity 1 54 0 991 176 0 0 chrX 166339021 166339197 -10634943 + L1MA8 LINE L1 5623 5798 -493 328 200 87 0 chrX 166339221 166339336 -10634804 + (TATATG)n Simple_repeat Simple_repeat 3 127 0 2682 123 31 22 chrX 166339353 166339842 -10634298 + L1MA8 LINE L1 5793 6285 -6 24 0 0 0 chrX 166339847 166339871 -10634269 + AT_rich Low_complexity Low_complexity 1 24 0 383 273 74 28 chrX 166340395 166340611 -10633529 - MER20B DNA MER1_type -44 739 514 1606 199 25 7 chrX 166340860 166341142 -10632998 + AluJo SINE Alu 1 287 -25 1451 175 0 45 chrX 166341153 166341439 -10632701 + AluJo SINE Alu 1 273 -39 489 267 213 7 chrX 166341480 166341757 -10632383 - MER20B DNA MER1_type -449 334 1 225 108 0 0 chrX 166344652 166344689 -10629451 + (T)n Simple_repeat Simple_repeat 1 37 0 876 157 13 106 chrX 166345789 166346024 -10628116 + MER20 DNA MER1_type 1 213 -6 463 275 0 18 chrX 166346666 166346851 -10627289 + L1MC4 LINE L1 7382 7653 -342 4985 88 126 85 chrX 166346860 166348330 -10625810 + pTR5 LTR ERV1 743 2438 0 382 239 206 22 chrX 166348340 166348616 -10625524 + L1MC4 LINE L1 7574 7900 -142 23 54 0 0 chrX 166348846 166348883 -10625257 + AT_rich Low_complexity Low_complexity 1 37 0 1355 230 58 27 chrX 166348907 166349277 -10624863 + L1MB7 LINE L1 5713 6101 -83 1935 141 46 32 chrX 166349277 166349647 -10624493 + THE1C LTR MaLR 1 375 0 1355 230 58 27 chrX 166349647 166349724 -10624416 + L1MB7 LINE L1 6101 6174 -10 1268 119 0 6 chrX 166349937 166350114 -10624026 - AluSg/x SINE Alu -12 300 125 621 225 73 17 chrX 166350646 166350824 -10623316 + MER5A DNA MER1_type 2 189 0 2153 155 14 3 chrX 166351650 166352011 -10622129 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chrX 166353738 166353767 -10620373 + AT_rich Low_complexity Low_complexity 1 29 0 1021 103 7 0 chrX 166354544 166354680 -10619460 + AluY SINE Alu 1 137 -174 873 199 37 19 chrX 166354702 166354918 -10619222 - L1MB2 LINE L1 -57 6114 5895 303 233 0 0 chrX 166355007 166355080 -10619060 - LTR16A LTR ERVL -79 371 299 2295 91 0 0 chrX 166355277 166355564 -10618576 - AluSg SINE Alu -23 287 1 310 281 23 53 chrX 166356103 166356274 -10617866 - ERVL LTR ERVL -829 4935 4770 225 240 20 0 chrX 166356518 166356568 -10617572 + MER91B DNA MER1_type 1 51 -139 271 278 25 11 chrX 166357209 166357296 -10616844 + MIR SINE MIR 19 107 -101 258 32 0 0 chrX 166358404 166358435 -10615705 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 279 0 0 0 chrX 166358434 166358465 -10615675 + (GA)n Simple_repeat Simple_repeat 2 32 0 870 206 11 11 chrX 166359918 166360107 -10614033 - MLT1D LTR MaLR 0 505 317 23 0 0 0 chrX 166360263 166360286 -10613854 + AT_rich Low_complexity Low_complexity 1 23 0 942 216 12 48 chrX 166360974 166361290 -10612850 - MLT1A1 LTR MaLR 0 365 19 3488 117 4 2 chrX 166361628 166362157 -10611983 - LTR26B LTR ERV1 0 531 2 2601 143 18 7 chrX 166363092 166363532 -10610608 + MER65A LTR ERV1 1 445 0 2341 36 0 0 chrX 166363708 166363986 -10610154 + L1PA3 LINE L1 5875 6152 -3 25 0 0 0 chrX 166364005 166364030 -10610110 + AT_rich Low_complexity Low_complexity 1 25 0 1052 146 55 32 chrX 166364223 166364443 -10609697 + L1MB7 LINE L1 5944 6168 -16 754 376 51 15 chrX 166364505 166364976 -10609164 - L3 LINE CR1 -41 1536 1049 649 215 31 0 chrX 166365068 166365231 -10608909 - MER53 DNA DNA 0 189 22 3053 199 44 8 chrX 166365237 166365947 -10608193 - L1MC1 LINE L1 -10 6323 5589 193 255 20 0 chrX 166366078 166366129 -10608011 - L2 LINE L2 0 3313 3262 188 393 12 0 chrX 166367565 166367649 -10606491 - L2 LINE L2 0 3313 3229 1514 168 69 9 chrX 166367933 166368267 -10605873 + L1MA4 LINE L1 5941 6294 -6 958 203 19 0 chrX 166369260 166369467 -10604673 + L1MC1 LINE L1 6113 6323 -10 337 254 15 0 chrX 166369501 166369631 -10604509 + (CATA)n Simple_repeat Simple_repeat 3 134 0 2824 80 21 92 chrX 166370660 166370756 -10603384 - MLT2A1 LTR ERVL 0 444 343 297 0 0 0 chrX 166370756 166370789 -10603351 + (CA)n Simple_repeat Simple_repeat 2 34 0 2824 80 21 92 chrX 166370789 166371170 -10602970 - MLT2A1 LTR ERVL -101 343 1 26292 62 7 1 chrX 166371170 166374600 -10599540 - HERVL-A1 LTR ERVL 0 5654 2205 5560 56 8 7 chrX 166374596 166375333 -10598807 - HERVL-A1 LTR ERVL -4479 1175 438 * 294 29 0 0 chrX 166375363 166375398 -10598742 + (CA)n Simple_repeat Simple_repeat 2 36 0 2697 84 20 5 chrX 166375398 166375781 -10598359 - MLT2A1 LTR ERVL -52 392 1 2180 161 28 86 chrX 166376990 166377562 -10596578 - LTR9 LTR ERV1 -20 592 54 325 143 0 36 chrX 166377566 166377622 -10596518 - HUERS-P1 LTR ERV1 -6209 54 1 4432 115 45 0 chrX 166377622 166378283 -10595857 - LTR8 LTR ERV1 0 691 1 189 0 0 0 chrX 166378303 166378324 -10595816 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 1659 144 8 102 chrX 166378774 166379176 -10594964 + LTR8 LTR ERV1 1 364 -327 581 118 109 25 chrX 166379170 166379289 -10594851 - LTR8A LTR ERV1 -598 129 1 * 5323 135 14 19 chrX 166380380 166381286 -10592854 - L1PB3 LINE L1 -2 6152 5255 1882 112 179 16 chrX 166381286 166381599 -10592541 + THE1B LTR MaLR 1 364 0 5323 135 14 19 chrX 166381599 166381674 -10592466 - L1PB3 LINE L1 -899 5255 5181 4750 39 0 0 chrX 166382059 166382674 -10591466 - L1P LINE L1 -3044 3102 2488 8926 37 0 3 chrX 166382674 166384545 -10589595 + L1PA5 LINE L1 4281 6151 -3 255 204 0 0 chrX 166389536 166389590 -10584550 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 215 350 60 0 chrX 166390847 166390964 -10583176 + MIR SINE MIR 133 256 -6 485 224 6 24 chrX 166391121 166391291 -10582849 + GA-rich Low_complexity Low_complexity 6 172 0 687 98 0 0 chrX 166391421 166391513 -10582627 - AluSg/x SINE Alu -13 297 206 22 0 0 0 chrX 166391944 166391966 -10582174 + AT_rich Low_complexity Low_complexity 1 22 0 2268 119 44 44 chrX 166392405 166392767 -10581373 + THE1B LTR MaLR 1 362 -2 3991 92 8 8 chrX 166392907 166393418 -10580722 + MER9 LTR ERVK 1 511 0 328 269 19 0 chrX 166393547 166393655 -10580485 + GA-rich Low_complexity Low_complexity 2 111 0 400 320 56 30 chrX 166394710 166394944 -10579196 + MIR SINE MIR 10 249 -13 1538 159 19 52 chrX 166397298 166397606 -10576534 - AluJb SINE Alu -14 298 1 280 365 152 7 chrX 166398096 166398241 -10575899 - L2 LINE L2 0 3272 3107 315 268 36 36 chrX 166399586 166399698 -10574442 + MER94 DNA DNA 2 113 -21 181 226 0 0 chrX 166399757 166399788 -10574352 + MER5B DNA MER1_type 14 44 -134 * 192 77 0 0 chrX 166399791 166399817 -10574323 + (CA)n Simple_repeat Simple_repeat 2 27 0 185 327 0 19 chrX 166399817 166399859 -10574281 + MIR3 SINE MIR 150 192 -16 240 350 98 6 chrX 166400301 166400484 -10573656 + MIR SINE MIR 44 243 -19 237 283 22 11 chrX 166400484 166400576 -10573564 + (CTA)n Simple_repeat Simple_repeat 1 93 0 2079 147 41 49 chrX 166400599 166400967 -10573173 + MLT1A1 LTR MaLR 1 365 0 2110 137 34 62 chrX 166400986 166401019 -10573121 - THE1C LTR MaLR 0 375 343 2133 129 0 0 chrX 166401019 166401314 -10572826 + AluSx SINE Alu 16 310 -2 2110 137 34 62 chrX 166401314 166401666 -10572474 - THE1C LTR MaLR -32 343 1 476 357 32 22 chrX 166401963 166402274 -10571866 + LTR16B LTR ERVL 37 350 -114 22 0 0 0 chrX 166402871 166402893 -10571247 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 43 32 chrX 166402907 166403001 -10571139 - MIR SINE MIR -26 236 142 337 327 9 0 chrX 166403109 166403219 -10570921 - MIR SINE MIR -34 228 118 2497 133 0 38 chrX 166403226 166403618 -10570522 - MER83B LTR ERV1 -1 377 1 1082 204 35 9 chrX 166403618 166403844 -10570296 + L1M1 LINE L1 18 249 -7316 7479 128 14 6 chrX 166403888 166406080 -10568060 + L1MA1 LINE L1 4093 6302 0 518 200 20 0 chrX 166406089 166406189 -10567951 - MIR SINE MIR -121 141 40 265 91 18 0 chrX 166406301 166406356 -10567784 - LTR66 LTR ERVL -161 449 394 236 160 0 80 chrX 166406363 166406463 -10567677 + (CATA)n Simple_repeat Simple_repeat 3 94 0 260 290 54 11 chrX 166407222 166407315 -10566825 + L2 LINE L2 3217 3313 0 249 256 35 12 chrX 166407364 166407450 -10566690 - MARNA DNA Mariner -486 100 13 292 203 0 0 chrX 166407927 166407986 -10566154 + L1ME4a LINE L1 6063 6121 0 27 0 0 0 chrX 166408284 166408311 -10565829 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chrX 166409372 166409402 -10564738 + AT_rich Low_complexity Low_complexity 1 30 0 818 161 43 0 chrX 166409942 166410104 -10564036 - L1MA8 LINE L1 -3 6288 6120 4328 225 41 32 chrX 166410362 166411393 -10562747 + MER45B DNA AcHobo 1 1040 0 180 311 27 0 chrX 166411785 166411859 -10562281 + MER5B DNA MER1_type 2 77 -101 577 294 39 11 chrX 166412538 166412718 -10561422 + MIR SINE MIR 56 240 -22 2122 116 0 7 chrX 166413385 166413700 -10560440 - AluSx SINE Alu 0 313 1 2278 123 37 57 chrX 166415435 166415818 -10558322 + THE1C LTR MaLR 1 375 0 2188 112 0 0 chrX 166415955 166416242 -10557898 - AluSx SINE Alu -8 304 18 2465 85 3 0 chrX 166417259 166417565 -10556575 - AluSp SINE Alu -6 307 1 2159 168 11 8 chrX 166418473 166418837 -10555303 + MLT1A1 LTR MaLR 1 365 0 233 139 69 14 chrX 166418870 166418942 -10555198 + (TA)n Simple_repeat Simple_repeat 1 76 0 245 70 47 0 chrX 166419368 166419411 -10554729 + (TCTG)n Simple_repeat Simple_repeat 2 46 0 2524 61 3 0 chrX 166419939 166420236 -10553904 + AluSp SINE Alu 2 299 -14 200 321 94 28 chrX 166420587 166420693 -10553447 + L2 LINE L2 3139 3251 -21 248 259 0 0 chrX 166420856 166420910 -10553230 - L2 LINE L2 -12 3301 3248 813 211 0 0 chrX 166420972 166421105 -10553035 - FLAM_A SINE Alu 0 133 1 1926 160 53 28 chrX 166421493 166421849 -10552291 - MLT1A1 LTR MaLR 0 365 1 253 289 74 25 chrX 166422630 166422751 -10551389 - MIR SINE MIR -63 145 19 2026 210 72 13 chrX 166427071 166427529 -10546611 - MLT1D LTR MaLR 0 505 21 220 278 44 22 chrX 166427741 166427831 -10546309 + L2 LINE L2 3203 3294 -19 351 350 36 0 chrX 166427853 166427993 -10546147 + MIR SINE MIR 47 191 -71 243 358 53 0 chrX 166428006 166428101 -10546039 - MER5B DNA MER1_type -2 176 77 2103 152 0 0 chrX 166429351 166429653 -10544487 - AluSx SINE Alu -7 305 4 224 307 27 27 chrX 166429716 166429791 -10544349 - MIR SINE MIR -110 98 24 488 264 83 54 chrX 166430433 166430709 -10543431 + L2 LINE L2 3030 3313 0 1367 249 19 70 chrX 166430916 166431443 -10542697 + MLT1D LTR MaLR 1 500 -5 2408 114 5 43 chrX 166432092 166432461 -10541679 + THE1A LTR MaLR 1 355 0 218 186 0 0 chrX 166432781 166432824 -10541316 + (TG)n Simple_repeat Simple_repeat 2 44 0 304 281 67 43 chrX 166432869 166433033 -10541107 + MIR SINE MIR 42 209 -53 214 280 175 21 chrX 166433123 166433266 -10540874 - L3b LINE CR1 -291 1292 1128 21 0 0 0 chrX 166433366 166433387 -10540753 + AT_rich Low_complexity Low_complexity 1 21 0 251 341 24 0 chrX 166433985 166434070 -10540070 + MIR SINE MIR 60 146 -116 566 182 97 91 chrX 166435233 166435409 -10538731 - MER20 DNA MER1_type -37 182 6 209 135 27 0 chrX 166436527 166436564 -10537576 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 849 244 6 17 chrX 166436846 166437026 -10537114 + MER45A DNA AcHobo 1 178 0 22 0 0 0 chrX 166439746 166439768 -10534372 + AT_rich Low_complexity Low_complexity 1 22 0 40 37 0 0 chrX 166440127 166440181 -10533959 + AT_rich Low_complexity Low_complexity 1 54 0 872 296 79 11 chrX 166440662 166441030 -10533110 + MLT1J LTR MaLR 2 394 -117 2451 71 0 0 chrX 166441070 166441366 -10532774 - AluY SINE Alu -15 296 1 242 341 22 0 chrX 166441414 166441505 -10532635 - MIR SINE MIR -100 162 70 1344 168 0 26 chrX 166442703 166442929 -10531211 + AluJb SINE Alu 87 306 -6 25 0 0 0 chrX 166442933 166442958 -10531182 + AT_rich Low_complexity Low_complexity 1 25 0 2349 102 0 3 chrX 166443325 166443629 -10530511 + AluSq SINE Alu 1 303 -10 246 114 0 0 chrX 166443703 166443738 -10530402 + U2 snRNA snRNA 1 35 -153 551 233 80 18 chrX 166444691 166444854 -10529286 - MER58A DNA MER1_type -16 208 36 234 162 0 0 chrX 166444894 166444931 -10529209 + MIR3 SINE MIR 118 154 -54 240 319 0 0 chrX 166445144 166445213 -10528927 + L2 LINE L2 3203 3271 -1 216 257 0 0 chrX 166446690 166446760 -10527380 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2442 46 0 0 chrX 166447045 166447369 -10526771 + AluY SINE Alu 1 324 0 914 136 23 0 chrX 166448827 166448959 -10525181 - AluJb SINE Alu -173 139 5 1770 166 0 17 chrX 166449043 166449344 -10524796 - AluJb SINE Alu -16 296 1 634 204 66 7 chrX 166449509 166449661 -10524479 + MER20 DNA MER1_type 58 218 -1 2339 119 33 25 chrX 166450449 166450810 -10523330 - THE1B LTR MaLR 0 364 1 486 0 0 0 chrX 166450963 166451017 -10523123 + (TC)n Simple_repeat Simple_repeat 1 54 0 739 73 18 0 chrX 166451856 166451965 -10522175 - L1PA13 LINE L1 -1 6162 6052 206 305 0 0 chrX 166453267 166453326 -10520814 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 265 177 113 0 chrX 166454702 166454764 -10519376 + Tigger2 DNA MER2_type 1 69 -2649 * 2315 140 54 30 chrX 166454762 166455191 -10518949 + Tigger2 DNA MER2_type 2280 2718 0 252 261 14 0 chrX 166455769 166455838 -10518302 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 304 240 158 7 chrX 166455858 166456004 -10518136 + MER112 DNA MER1_type 81 248 -12 274 321 34 59 chrX 166456928 166457165 -10516975 - L2 LINE L2 -8 3305 3075 319 349 7 59 chrX 166457189 166457341 -10516799 - MER91B DNA MER1_type 0 190 47 1457 173 37 57 chrX 166457359 166457659 -10516481 - AluJo SINE Alu -6 306 13 31 0 0 0 chrX 166457815 166457846 -10516294 + AT_rich Low_complexity Low_complexity 1 31 0 415 57 0 0 chrX 166458268 166458321 -10515819 + LTR46 LTR ERV1 1 53 -407 3367 70 38 5 chrX 166458327 166458772 -10515368 + LTR46 LTR ERV1 1 460 0 2015 145 6 3 chrX 166459210 166459521 -10514619 + AluJb SINE Alu 1 312 0 2495 112 16 0 chrX 166459605 166459980 -10514160 - L1PA16 LINE L1 -4 6162 5782 1189 147 11 0 chrX 166460066 166460256 -10513884 - AluJb SINE Alu 0 312 121 198 0 0 0 chrX 166460256 166460278 -10513862 + (TTTA)n Simple_repeat Simple_repeat 4 25 0 989 0 0 0 chrX 166460278 166460387 -10513753 - AluYb8 SINE Alu 0 318 210 937 130 0 0 chrX 166460388 166460519 -10513621 - AluJb SINE Alu -181 131 1 180 152 0 0 chrX 166460562 166460595 -10513545 + T-rich Low_complexity Low_complexity 4 36 0 1563 205 16 30 chrX 166460714 166461017 -10513123 + AluJo SINE Alu 1 299 -13 341 284 181 26 chrX 166462022 166462177 -10511963 + MER5A DNA MER1_type 8 186 -3 23 54 0 0 chrX 166463284 166463321 -10510819 + AT_rich Low_complexity Low_complexity 1 37 0 1143 326 118 32 chrX 166463398 166464410 -10509730 + L2 LINE L2 1278 2376 -938 317 309 59 32 chrX 166467282 166467502 -10506638 - L1MC/D LINE L1 -2116 5692 5467 186 43 0 0 chrX 166468990 166469013 -10505127 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 2561 115 3 3 chrX 166469352 166469716 -10504424 - THE1B LTR MaLR 0 364 1 2560 106 17 3 chrX 166472304 166472663 -10501477 - THE1B LTR MaLR 0 364 1 189 224 0 0 chrX 166473030 166473088 -10501052 + CT-rich Low_complexity Low_complexity 4 61 0 183 260 120 0 chrX 166474262 166474312 -10499828 - L2 LINE L2 -76 3237 3182 978 207 18 14 chrX 166474400 166474617 -10499523 + MER20 DNA MER1_type 2 219 0 871 92 0 0 chrX 166474662 166474782 -10499358 - L1PA10 LINE L1 -4 6164 6045 25 51 0 0 chrX 166474905 166474944 -10499196 + AT_rich Low_complexity Low_complexity 1 39 0 2046 107 3 3 chrX 166474967 166475257 -10498883 + AluSx SINE Alu 1 290 -22 26 0 0 0 chrX 166475261 166475287 -10498853 + AT_rich Low_complexity Low_complexity 1 26 0 2121 79 50 0 chrX 166476903 166477180 -10496960 + AluY SINE Alu 1 291 -20 192 77 0 0 chrX 166477180 166477206 -10496934 + (TA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chrX 166477465 166477486 -10496654 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chrX 166477857 166477886 -10496254 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 166479348 166479380 -10494760 + AT_rich Low_complexity Low_complexity 1 32 0 481 161 61 0 chrX 166479642 166479822 -10494318 - L1MC1 LINE L1 -16 6317 6077 * 534 237 6 6 chrX 166479815 166479971 -10494169 - L1M4 LINE L1 -1233 4913 4758 27 0 0 0 chrX 166480056 166480083 -10494057 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chrX 166480775 166480806 -10493334 + AT_rich Low_complexity Low_complexity 1 31 0 295 251 75 86 chrX 166481256 166481443 -10492697 - MIR SINE MIR -77 185 1 3465 108 23 12 chrX 166481573 166481900 -10492240 + L1MA2 LINE L1 5741 6078 -226 2260 70 3 0 chrX 166481900 166482185 -10491955 + AluY SINE Alu 26 311 0 3465 108 23 12 chrX 166482185 166482415 -10491725 + L1MA2 LINE L1 6078 6304 0 26 30 0 0 chrX 166482430 166482463 -10491677 + AT_rich Low_complexity Low_complexity 1 33 0 354 291 124 34 chrX 166482557 166482822 -10491318 + L1 LINE L1 3163 3451 -2695 522 307 20 0 chrX 166483205 166483355 -10490785 + L2 LINE L2 1094 1246 -2068 598 277 24 12 chrX 166483396 166483562 -10490578 - MER5B DNA MER1_type -4 174 7 402 241 234 0 chrX 166483563 166483700 -10490440 - MER5A DNA MER1_type -18 171 3 737 267 76 41 chrX 166483703 166484044 -10490096 + L2 LINE L2 1305 1657 -1657 203 147 0 0 chrX 166484079 166484113 -10490027 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 594 179 0 53 chrX 166484113 166484303 -10489837 + GA-rich Low_complexity Low_complexity 1 180 0 2196 302 65 45 chrX 166484314 166484867 -10489273 + L2 LINE L2 1810 2351 -962 216 0 0 0 chrX 166484867 166484891 -10489249 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 302 65 45 chrX 166484891 166485520 -10488620 + L2 LINE L2 2351 3014 -299 501 263 144 19 chrX 166485699 166485859 -10488281 - MER5A DNA MER1_type -1 188 9 1519 180 51 46 chrX 166485970 166486342 -10487798 - MLT1A2 LTR MaLR 0 374 1 1742 191 0 7 chrX 166486497 166486796 -10487344 + AluJo SINE Alu 6 302 -10 209 382 76 30 chrX 166487533 166487664 -10486476 - L2 LINE L2 -18 3254 3118 403 315 54 22 chrX 166488204 166488388 -10485752 - HAL1 LINE L1 -17 2490 2301 871 311 136 13 chrX 166488487 166489107 -10485033 - HAL1 LINE L1 -337 2170 1475 421 337 101 35 chrX 166489216 166489504 -10484636 + HAL1 LINE L1 657 963 -1544 27 0 0 0 chrX 166489620 166489647 -10484493 + AT_rich Low_complexity Low_complexity 1 27 0 27 62 0 0 chrX 166490258 166490306 -10483834 + AT_rich Low_complexity Low_complexity 1 48 0 1990 139 126 23 chrX 166491590 166491978 -10482162 + MSTA LTR MaLR 1 428 0 1720 151 19 68 chrX 166492347 166492394 -10481746 + MLT1A1 LTR MaLR 10 58 -307 1875 154 6 25 chrX 166492394 166492712 -10481428 + AluJb SINE Alu 1 312 0 1720 151 19 68 chrX 166492712 166493034 -10481106 + MLT1A1 LTR MaLR 58 361 -4 199 390 93 17 chrX 166493263 166493381 -10480759 - MIR SINE MIR -62 146 20 633 244 17 6 chrX 166495031 166495203 -10478937 + L1ME LINE L1 5547 5720 -450 286 346 138 0 chrX 166495433 166495563 -10478577 - MIR SINE MIR -47 215 68 * 1344 287 73 90 chrX 166495557 166496588 -10477552 - L2 LINE L2 -174 3139 2090 210 37 0 0 chrX 166496787 166496814 -10477326 + (TG)n Simple_repeat Simple_repeat 2 28 0 367 191 15 29 chrX 166498049 166498185 -10475955 + CT-rich Low_complexity Low_complexity 1 134 0 226 139 0 0 chrX 166498191 166498227 -10475913 + MLT1A2 LTR MaLR 339 374 0 615 239 166 15 chrX 166498228 166498433 -10475707 - MER21B LTR ERV1 -609 254 19 2834 65 3 0 chrX 166498556 166498908 -10475232 + THE1A LTR MaLR 1 353 -2 630 73 0 10 chrX 166498910 166499006 -10475134 + THE1A-int LTR MaLR 1 95 -1485 1071 141 40 5 chrX 166499571 166499770 -10474370 + L1MB1 LINE L1 5850 6055 -134 1651 166 69 31 chrX 166499770 166500306 -10473834 - MLT2A2 LTR ERVL 0 554 1 432 217 0 33 chrX 166500308 166500428 -10473712 + L1MB1 LINE L1 6053 6168 0 228 279 153 47 chrX 166500494 166500654 -10473486 + MIR SINE MIR 1 182 -26 292 246 0 0 chrX 166500716 166500777 -10473363 + L2 LINE L2 3210 3270 -2 22 56 0 0 chrX 166500777 166500813 -10473327 + AT_rich Low_complexity Low_complexity 1 36 0 313 308 103 71 chrX 166501351 166501509 -10472631 + MIR SINE MIR 1 170 -92 1446 271 72 14 chrX 166501509 166501996 -10472144 + MLT2B2 LTR ERVL 1 515 0 313 308 103 71 chrX 166501996 166502061 -10472079 + MIR SINE MIR 170 231 -31 2174 118 0 29 chrX 166502813 166503126 -10471014 - AluSx SINE Alu -8 304 1 23 86 0 0 chrX 166504378 166504436 -10469704 + AT_rich Low_complexity Low_complexity 1 58 0 373 189 23 6 chrX 166504436 166504611 -10469529 + (TA)n Simple_repeat Simple_repeat 1 178 0 181 223 21 0 chrX 166504750 166504844 -10469296 + (TA)n Simple_repeat Simple_repeat 1 96 0 199 153 47 12 chrX 166504899 166504984 -10469156 + (TA)n Simple_repeat Simple_repeat 1 88 0 33 43 0 0 chrX 166505057 166505104 -10469036 + AT_rich Low_complexity Low_complexity 1 47 0 241 182 36 12 chrX 166505182 166505347 -10468793 + (TA)n Simple_repeat Simple_repeat 1 169 0 25 51 0 0 chrX 166505350 166505389 -10468751 + AT_rich Low_complexity Low_complexity 1 39 0 444 220 40 6 chrX 166505433 166505606 -10468534 + (TA)n Simple_repeat Simple_repeat 1 179 0 396 200 5 35 chrX 166506037 166506273 -10467867 + CT-rich Low_complexity Low_complexity 1 228 0 300 148 0 34 chrX 166507278 166507366 -10466774 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 478 192 0 28 chrX 166507378 166507560 -10466580 + CT-rich Low_complexity Low_complexity 1 177 0 2238 112 3 0 chrX 166509047 166509352 -10464788 + AluSp SINE Alu 1 306 -7 336 24 0 0 chrX 166509609 166509650 -10464490 + (TG)n Simple_repeat Simple_repeat 2 42 0 327 159 11 91 chrX 166509720 166509808 -10464332 - MLT2C1 LTR ERVL -57 340 260 1559 181 29 71 chrX 166509808 166510358 -10463782 + L1M2 LINE L1 5158 5689 -623 6661 87 13 1 chrX 166510878 166511806 -10462334 + THE1A-int LTR MaLR 642 1580 0 2565 102 11 6 chrX 166511806 166512159 -10461981 + THE1A LTR MaLR 1 355 0 290 233 23 23 chrX 166512460 166512546 -10461594 + CT-rich Low_complexity Low_complexity 3 88 0 312 70 0 0 chrX 166512596 166512639 -10461501 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 2470 101 8 8 chrX 166512817 166513172 -10460968 + THE1A LTR MaLR 1 355 0 222 37 0 0 chrX 166514375 166514402 -10459738 + (TA)n Simple_repeat Simple_repeat 1 27 0 1931 124 11 3 chrX 166514441 166514755 -10459385 + AluSx SINE Alu 1 316 0 348 64 0 0 chrX 166515545 166515592 -10458548 + (CAT)n Simple_repeat Simple_repeat 1 47 0 219 336 199 18 chrX 166516546 166516888 -10457252 + L2 LINE L2 2481 2884 -430 268 348 44 37 chrX 166517196 166517331 -10456809 + L2 LINE L2 3137 3272 0 351 272 0 0 chrX 166517845 166517948 -10456192 + (TG)n Simple_repeat Simple_repeat 1 103 0 1600 159 39 88 chrX 166518135 166518499 -10455641 - MER7A DNA MER2_type -1 345 2 365 340 20 20 chrX 166518546 166518696 -10455444 - MIR SINE MIR -1 261 112 267 258 192 33 chrX 166518879 166519030 -10455110 + MIR SINE MIR 62 236 -26 242 167 0 45 chrX 166520010 166520076 -10454064 + GA-rich Low_complexity Low_complexity 6 68 0 1960 160 3 10 chrX 166520371 166520684 -10453456 - AluJo SINE Alu -1 311 1 366 23 0 0 chrX 166520720 166520763 -10453377 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 264 295 209 29 chrX 166520786 166520925 -10453215 - L2 LINE L2 0 3272 3109 333 296 0 38 chrX 166522194 166522380 -10451760 + (TA)n Simple_repeat Simple_repeat 2 180 0 1854 159 0 3 chrX 166522452 166522748 -10451392 - AluSx SINE Alu -17 295 1 23 0 0 0 chrX 166522757 166522780 -10451360 + AT_rich Low_complexity Low_complexity 1 23 0 246 283 243 13 chrX 166524118 166524270 -10449870 - MER5A DNA MER1_type 0 189 3 186 249 58 116 chrX 166524537 166524710 -10449430 + L2 LINE L2 3046 3208 -105 741 89 32 0 chrX 166524779 166524902 -10449238 + GA-rich Low_complexity Low_complexity 1 127 0 811 244 106 9 chrX 166524902 166525396 -10448744 - L1ME LINE L1 -525 5639 5095 409 303 181 36 chrX 166525788 166525904 -10448236 + L2 LINE L2 2470 2568 -746 2552 225 61 11 chrX 166525904 166526526 -10447614 + MER82 DNA MER2_type 1 653 0 409 303 181 36 chrX 166526526 166526686 -10447454 + L2 LINE L2 2568 2786 -528 185 331 181 30 chrX 166526768 166526934 -10447206 + L2 LINE L2 2852 3042 -271 966 266 33 27 chrX 166526959 166527468 -10446672 - MER34B LTR ERV1 -5 560 11 300 348 13 51 chrX 166527545 166527703 -10446437 + L2 LINE L2 3160 3311 -2 193 227 61 45 chrX 166527739 166527805 -10446335 + L2 LINE L2 3156 3222 -91 1000 245 130 17 chrX 166527976 166528437 -10445703 - MLT1G1 LTR MaLR 0 595 83 235 289 0 0 chrX 166528566 166528618 -10445522 + (TG)n Simple_repeat Simple_repeat 2 53 0 23 0 0 0 chrX 166528647 166528670 -10445470 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chrX 166529007 166529038 -10445102 + (TG)n Simple_repeat Simple_repeat 2 32 0 312 274 116 14 chrX 166529101 166529247 -10444893 - L2 LINE L2 -3 3310 3150 2040 147 0 0 chrX 166530249 166530548 -10443592 - AluSx SINE Alu -12 300 2 1943 153 53 35 chrX 166530623 166530750 -10443390 - L1MA10 LINE L1 -2 6332 6209 2357 98 42 25 chrX 166530750 166531108 -10443032 + THE1B LTR MaLR 1 364 0 1943 153 53 35 chrX 166531108 166531431 -10442709 - L1MA10 LINE L1 -125 6209 5874 2841 159 27 0 chrX 166531431 166531947 -10442193 + L1MA10 LINE L1 5351 5880 -309 678 180 17 17 chrX 166532828 166533006 -10441134 + CT-rich Low_complexity Low_complexity 2 179 0 603 224 17 0 chrX 166533023 166533197 -10440943 + CT-rich Low_complexity Low_complexity 3 179 0 198 209 0 0 chrX 166533966 166534009 -10440131 + (CATG)n Simple_repeat Simple_repeat 1 43 0 439 194 19 37 chrX 166534132 166534240 -10439900 - MER20 DNA MER1_type -113 106 1 538 277 23 34 chrX 166534468 166534645 -10439495 + MER5B DNA MER1_type 4 178 0 253 358 32 8 chrX 166535002 166535248 -10438892 - HAL1b LINE L1 -690 658 407 350 336 57 39 chrX 166535356 166535585 -10438555 - HAL1b LINE L1 -1051 297 65 183 260 120 0 chrX 166587230 166587280 -10386860 - L2 LINE L2 -76 3237 3182 990 203 18 14 chrX 166587368 166587585 -10386555 + MER20 DNA MER1_type 2 219 0 864 100 0 0 chrX 166587630 166587750 -10386390 - L1PA10 LINE L1 -4 6164 6045 25 51 0 0 chrX 166587873 166587912 -10386228 + AT_rich Low_complexity Low_complexity 1 39 0 2046 107 3 3 chrX 166587935 166588225 -10385915 + AluSx SINE Alu 1 290 -22 22 0 0 0 chrX 166588229 166588251 -10385889 + AT_rich Low_complexity Low_complexity 1 22 0 2151 79 50 0 chrX 166589867 166590147 -10383993 + AluY SINE Alu 1 294 -17 22 35 0 0 chrX 166590820 166590849 -10383291 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chrX 166592309 166592341 -10381799 + AT_rich Low_complexity Low_complexity 1 32 0 481 161 61 0 chrX 166592603 166592783 -10381357 - L1MC1 LINE L1 -16 6317 6077 * 534 237 6 6 chrX 166592776 166592932 -10381208 - L1M4 LINE L1 -1233 4913 4758 27 0 0 0 chrX 166593017 166593044 -10381096 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chrX 166593739 166593770 -10380370 + AT_rich Low_complexity Low_complexity 1 31 0 295 251 75 86 chrX 166594220 166594407 -10379733 - MIR SINE MIR -77 185 1 3447 109 23 12 chrX 166594537 166594864 -10379276 + L1MA2 LINE L1 5741 6078 -226 2247 74 3 0 chrX 166594864 166595149 -10378991 + AluY SINE Alu 26 311 0 3447 109 23 12 chrX 166595149 166595379 -10378761 + L1MA2 LINE L1 6078 6304 0 26 30 0 0 chrX 166595394 166595427 -10378713 + AT_rich Low_complexity Low_complexity 1 33 0 349 283 128 38 chrX 166595521 166595786 -10378354 + L1 LINE L1 3163 3451 -2695 522 307 20 0 chrX 166596169 166596319 -10377821 + L2 LINE L2 1094 1246 -2068 590 283 24 12 chrX 166596360 166596526 -10377614 - MER5B DNA MER1_type -4 174 7 402 241 234 0 chrX 166596527 166596664 -10377476 - MER5A DNA MER1_type -18 171 3 708 273 76 41 chrX 166596667 166597008 -10377132 + L2 LINE L2 1305 1657 -1657 203 147 0 0 chrX 166597043 166597077 -10377063 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 594 179 0 53 chrX 166597077 166597267 -10376873 + GA-rich Low_complexity Low_complexity 1 180 0 2196 302 65 45 chrX 166597278 166597831 -10376309 + L2 LINE L2 1810 2351 -962 216 0 0 0 chrX 166597831 166597855 -10376285 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 302 65 45 chrX 166597855 166598484 -10375656 + L2 LINE L2 2351 3014 -299 501 263 144 19 chrX 166598663 166598823 -10375317 - MER5A DNA MER1_type -1 188 9 1500 183 51 46 chrX 166598934 166599306 -10374834 - MLT1A2 LTR MaLR 0 374 1 1742 191 0 7 chrX 166599461 166599760 -10374380 + AluJo SINE Alu 6 302 -10 209 382 76 30 chrX 166600497 166600628 -10373512 - L2 LINE L2 -18 3254 3118 401 315 54 22 chrX 166601168 166601352 -10372788 - HAL1 LINE L1 -17 2490 2301 871 311 136 13 chrX 166601451 166602071 -10372069 - HAL1 LINE L1 -337 2170 1475 421 337 101 35 chrX 166602180 166602468 -10371672 + HAL1 LINE L1 657 963 -1544 27 0 0 0 chrX 166602584 166602611 -10371529 + AT_rich Low_complexity Low_complexity 1 27 0 27 62 0 0 chrX 166603222 166603270 -10370870 + AT_rich Low_complexity Low_complexity 1 48 0 1990 139 126 23 chrX 166604554 166604942 -10369198 + MSTA LTR MaLR 1 428 0 1726 151 19 68 chrX 166605311 166605358 -10368782 + MLT1A1 LTR MaLR 10 58 -307 1875 154 6 25 chrX 166605358 166605676 -10368464 + AluJb SINE Alu 1 312 0 1726 151 19 68 chrX 166605676 166605998 -10368142 + MLT1A1 LTR MaLR 58 361 -4 215 381 93 17 chrX 166606227 166606345 -10367795 - MIR SINE MIR -62 146 20 633 244 17 6 chrX 166607995 166608167 -10365973 + L1ME LINE L1 5547 5720 -450 286 346 138 0 chrX 166608397 166608527 -10365613 - MIR SINE MIR -47 215 68 * 1337 287 73 90 chrX 166608521 166609552 -10364588 - L2 LINE L2 -174 3139 2090 192 40 0 0 chrX 166609751 166609776 -10364364 + (TG)n Simple_repeat Simple_repeat 2 26 0 403 197 13 26 chrX 166610992 166611144 -10362996 + CT-rich Low_complexity Low_complexity 1 150 0 226 139 0 0 chrX 166611150 166611186 -10362954 + MLT1A2 LTR MaLR 339 374 0 615 239 166 15 chrX 166611187 166611392 -10362748 - MER21B LTR ERV1 -609 254 19 681 65 0 11 chrX 166611515 166611607 -10362533 + THE1A LTR MaLR 1 91 -264 632 363 16 12 chrX 166611771 166612019 -10362121 + MIR SINE MIR 14 262 0 180 244 0 22 chrX 166612225 166612270 -10361870 + L2 LINE L2 1758 1801 -1513 383 296 43 57 chrX 166613331 166613611 -10360529 + MLT1H LTR MaLR 7 320 -228 353 253 23 0 chrX 166614640 166614727 -10359413 + MARNA DNA Mariner 427 515 -71 204 283 30 81 chrX 166615243 166615342 -10358798 + MIR3 SINE MIR 108 201 -7 1579 191 0 55 chrX 166615711 166616036 -10358104 + AluJo SINE Alu 2 308 -4 191 267 93 53 chrX 166616055 166616130 -10358010 - MIR SINE MIR -98 164 87 2315 121 25 3 chrX 166616287 166616643 -10357497 + THE1B LTR MaLR 1 364 0 217 310 62 62 chrX 166616808 166616937 -10357203 + MER5A DNA MER1_type 61 189 0 480 308 158 0 chrX 166617080 166617226 -10356914 + MER5A DNA MER1_type 16 184 -5 1256 134 8 71 chrX 166617369 166617623 -10356517 + MER50 LTR ERV1 497 734 0 596 191 9 0 chrX 166617625 166617740 -10356400 + MER50-int LTR ERV1 4 119 -7086 2145 126 3 0 chrX 166617890 166618199 -10355941 + AluSx SINE Alu 3 312 0 1109 237 86 124 chrX 166618269 166618898 -10355242 + MER77 LTR ERV1 1 605 0 2354 161 30 23 chrX 166618975 166619404 -10354736 - MSTB1 LTR MaLR 0 432 1 320 308 147 57 chrX 166619407 166619706 -10354434 - L3 LINE CR1 -286 1291 966 190 324 76 0 chrX 166621208 166621313 -10352827 + MIR3 SINE MIR 91 203 -5 411 171 88 3 chrX 166621457 166621546 -10352594 + LTR28 LTR ERV1 1 87 -933 319 267 15 18 chrX 166622342 166622615 -10351525 + C-rich Low_complexity Low_complexity 1 271 0 474 217 0 48 chrX 166622629 166622818 -10351322 + C-rich Low_complexity Low_complexity 1 180 0 242 167 0 45 chrX 166623738 166623804 -10350336 + GA-rich Low_complexity Low_complexity 6 68 0 1960 160 3 10 chrX 166624099 166624412 -10349728 - AluJo SINE Alu -1 311 1 366 23 0 0 chrX 166624448 166624491 -10349649 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 203 292 226 29 chrX 166624514 166624651 -10349489 - L2 LINE L2 0 3272 3109 333 296 0 38 chrX 166625921 166626107 -10348033 + (TA)n Simple_repeat Simple_repeat 2 180 0 1854 159 0 3 chrX 166626179 166626475 -10347665 - AluSx SINE Alu -17 295 1 23 0 0 0 chrX 166626484 166626507 -10347633 + AT_rich Low_complexity Low_complexity 1 23 0 348 64 0 0 chrX 166627590 166627637 -10346503 + (ATG)n Simple_repeat Simple_repeat 1 47 0 228 35 0 0 chrX 166628427 166628456 -10345684 + (TTG)n Simple_repeat Simple_repeat 1 29 0 1930 124 11 3 chrX 166628458 166628741 -10345399 - AluSx SINE Alu -27 285 1 222 37 0 0 chrX 166628780 166628807 -10345333 + (TA)n Simple_repeat Simple_repeat 1 27 0 2470 101 8 8 chrX 166630010 166630365 -10343775 - THE1A LTR MaLR 0 355 1 246 116 0 0 chrX 166630544 166630587 -10343553 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 290 233 23 23 chrX 166630637 166630723 -10343417 + GA-rich Low_complexity Low_complexity 3 88 0 2565 102 11 6 chrX 166631024 166631377 -10342763 - THE1A LTR MaLR 0 355 1 6661 87 13 1 chrX 166631377 166632305 -10341835 - THE1A-int LTR MaLR 0 1580 642 1466 190 29 69 chrX 166632827 166633373 -10340767 - L1M2 LINE L1 -626 5686 5158 316 171 11 91 chrX 166633373 166633461 -10340679 + MLT2C1 LTR ERVL 260 340 -57 318 26 0 0 chrX 166633531 166633570 -10340570 + (CA)n Simple_repeat Simple_repeat 2 40 0 438 196 0 33 chrX 166634404 166634588 -10339552 + GA-rich Low_complexity Low_complexity 1 178 0 444 220 40 6 chrX 166635053 166635226 -10338914 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chrX 166635270 166635291 -10338849 + AT_rich Low_complexity Low_complexity 1 21 0 289 187 36 8 chrX 166635291 166635480 -10338660 + (TA)n Simple_repeat Simple_repeat 5 219 0 314 201 37 22 chrX 166635659 166635793 -10338347 + (TA)n Simple_repeat Simple_repeat 1 136 0 181 223 21 0 chrX 166635818 166635912 -10338228 + (TA)n Simple_repeat Simple_repeat 1 96 0 373 189 23 6 chrX 166636051 166636226 -10337914 + (TA)n Simple_repeat Simple_repeat 1 178 0 23 86 0 0 chrX 166636226 166636284 -10337856 + AT_rich Low_complexity Low_complexity 1 58 0 1812 126 7 38 chrX 166637537 166637852 -10336288 + AluSx SINE Alu 1 306 0 313 308 103 71 chrX 166638601 166638666 -10335474 - MIR SINE MIR -31 231 170 1446 271 72 14 chrX 166638666 166639153 -10334987 - MLT2B2 LTR ERVL 0 515 1 313 308 103 71 chrX 166639153 166639311 -10334829 - MIR SINE MIR -92 170 1 22 56 0 0 chrX 166639849 166639885 -10334255 + AT_rich Low_complexity Low_complexity 1 36 0 292 246 0 0 chrX 166639885 166639946 -10334194 - L2 LINE L2 -2 3270 3210 228 279 153 47 chrX 166640008 166640168 -10333972 - MIR SINE MIR -26 182 1 402 215 0 41 chrX 166640234 166640355 -10333785 - L1MB1 LINE L1 0 6168 6053 955 144 50 0 chrX 166640361 166640541 -10333599 + MLT2A2 LTR ERVL 4 192 -261 5026 21 0 0 chrX 166640642 166641249 -10332891 - L1PA4 LINE L1 -146 6009 5403 232 220 17 17 chrX 166643208 166643267 -10330873 + (CA)n Simple_repeat Simple_repeat 2 60 0 2400 101 16 42 chrX 166644169 166644554 -10329586 + THE1C LTR MaLR 1 375 0 569 306 40 0 chrX 166645660 166645833 -10328307 + L3b LINE CR1 1228 1407 -176 1098 117 0 42 chrX 166647079 166647292 -10326848 + L1MA8 LINE L1 5468 5670 -504 3061 154 26 17 chrX 166647418 166648022 -10326118 + L1MA8 LINE L1 5676 6285 -6 448 266 119 48 chrX 166648508 166648760 -10325380 - LTR16C LTR ERVL -28 463 194 3483 37 0 2 chrX 166648827 166649272 -10324868 - L1PA3 LINE L1 -795 5351 4906 6974 25 0 2 chrX 166649272 166650088 -10324052 + L1PA3 LINE L1 5338 6152 -3 3483 37 0 2 chrX 166650088 166650099 -10324041 - L1P LINE L1 -1240 4906 4896 756 126 0 0 chrX 166650156 166650267 -10323873 - FRAM SINE Alu -18 158 48 797 219 10 21 chrX 166653033 166653225 -10320915 + MER58B DNA MER1_type 146 335 -6 24 0 0 0 chrX 166653432 166653456 -10320684 + AT_rich Low_complexity Low_complexity 1 24 0 213 154 0 0 chrX 166653485 166653524 -10320616 + A-rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chrX 166653532 166653552 -10320588 + (TC)n Simple_repeat Simple_repeat 2 21 0 1857 184 34 3 chrX 166654030 166654384 -10319756 - MLT1A1 LTR MaLR 0 365 1 660 121 23 8 chrX 166655957 166656089 -10318051 + CT-rich Low_complexity Low_complexity 3 136 0 234 253 88 76 chrX 166656184 166656433 -10317707 + L1ME3 LINE L1 4102 4353 -1793 763 312 80 20 chrX 166656684 166657674 -10316466 + L1ME3 LINE L1 4890 5940 -222 192 158 0 0 chrX 166657767 166657805 -10316335 + (CA)n Simple_repeat Simple_repeat 1 38 0 296 285 88 0 chrX 166658098 166658235 -10315905 + L1ME LINE L1 5591 5739 -382 1997 153 7 0 chrX 166658683 166658984 -10315156 - AluSx SINE Alu -9 303 1 421 206 24 0 chrX 166659885 166660011 -10314129 + CT-rich Low_complexity Low_complexity 4 132 0 24 0 0 0 chrX 166660012 166660036 -10314104 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chrX 166660092 166660120 -10314020 + AT_rich Low_complexity Low_complexity 1 28 0 408 318 116 72 chrX 166660204 166660550 -10313590 + L3b LINE CR1 1190 1550 -33 1920 138 59 36 chrX 166661404 166661760 -10312380 - THE1B LTR MaLR 0 364 1 2468 175 86 0 chrX 166661815 166662336 -10311804 - L1MC3 LINE L1 -2 7783 7218 284 295 54 0 chrX 166662336 166662448 -10311692 - MLT1F1 LTR MaLR -415 152 35 410 122 10 41 chrX 166662448 166662546 -10311594 - L1MC3 LINE L1 -688 7097 7003 929 129 123 7 chrX 166663825 166663980 -10310160 - AluJb SINE Alu -11 301 129 256 256 58 0 chrX 166665971 166666057 -10308083 + MIR SINE MIR 63 153 -109 199 288 113 25 chrX 166666311 166666391 -10307749 + MIR SINE MIR 60 146 -62 405 0 0 0 chrX 166667249 166667294 -10306846 + (TG)n Simple_repeat Simple_repeat 1 45 0 1743 159 58 10 chrX 166667833 166668128 -10306012 + AluJb SINE Alu 1 309 -3 190 159 11 182 chrX 166668243 166668331 -10305809 - MER5A DNA MER1_type 0 189 117 * 324 275 0 33 chrX 166668265 166668356 -10305784 + MER5A DNA MER1_type 22 109 -80 2143 104 0 7 chrX 166668875 166669164 -10304976 - AluSc SINE Alu -20 289 3 199 91 91 127 chrX 166669169 166669224 -10304916 - MER5B DNA MER1_type -119 59 7 33 25 0 0 chrX 166669262 166669302 -10304838 + AT_rich Low_complexity Low_complexity 1 40 0 195 186 0 0 chrX 166669333 166669376 -10304764 + (CA)n Simple_repeat Simple_repeat 1 43 0 1116 182 77 72 chrX 166669396 166669759 -10304381 + MLT1A1 LTR MaLR 1 365 0 1326 224 38 19 chrX 166669966 166670244 -10303896 - LTR40b LTR ERVL -2 460 168 2561 128 39 7 chrX 166670244 166670658 -10303482 + MSTA LTR MaLR 2 428 0 1326 224 38 19 chrX 166670658 166670765 -10303375 - LTR40b LTR ERVL -294 168 64 225 330 73 44 chrX 166671693 166671899 -10302241 - MIR SINE MIR -31 231 20 314 341 72 6 chrX 166672353 166672520 -10301620 - L1ME4a LINE L1 -218 5903 5726 384 248 248 7 chrX 166673344 166673489 -10300651 - MER5A DNA MER1_type -1 188 9 264 200 33 0 chrX 166673505 166673565 -10300575 - MER5B DNA MER1_type 0 178 117 898 184 37 50 chrX 166673589 166673807 -10300333 + MER20 DNA MER1_type 1 215 -4 1633 171 0 65 chrX 166674824 166675134 -10299006 + AluJb SINE Alu 1 290 -22 213 161 35 210 chrX 166675607 166675750 -10298390 - MER5A DNA MER1_type -51 138 21 288 0 0 0 chrX 166676303 166676335 -10297805 + (TG)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chrX 166676369 166676397 -10297743 + AT_rich Low_complexity Low_complexity 1 28 0 2020 142 0 14 chrX 166677267 166677563 -10296577 + AluSx SINE Alu 7 298 -14 374 0 22 0 chrX 166677966 166678012 -10296128 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 744 122 0 0 chrX 166678952 166679067 -10295073 + FRAM SINE Alu 54 168 -8 524 207 0 0 chrX 166680983 166681065 -10293075 + T-rich Low_complexity Low_complexity 1 82 0 266 173 37 12 chrX 166681064 166681145 -10292995 + CT-rich Low_complexity Low_complexity 1 83 0 * 598 178 41 206 chrX 166681406 166681698 -10292442 + LTR28 LTR ERV1 1 179 -841 542 202 32 218 chrX 166681706 166682172 -10291968 + MER52A LTR ERV1 340 1445 -25 1999 142 61 3 chrX 166682655 166682999 -10291141 + THE1B LTR MaLR 1 364 0 1613 124 38 4 chrX 166683134 166683400 -10290740 - L1MB3 LINE L1 -1 6182 5908 817 101 7 2 chrX 166683405 166683541 -10290599 - L1PBa LINE L1 -4188 2674 2493 4276 141 1 17 chrX 166683556 166684307 -10289833 - L1P LINE L1 -3012 3134 2396 219 336 199 18 chrX 166685370 166685712 -10288428 + L2 LINE L2 2481 2884 -430 268 348 44 37 chrX 166686020 166686155 -10287985 + L2 LINE L2 3137 3272 0 351 272 0 0 chrX 166686670 166686773 -10287367 + (TG)n Simple_repeat Simple_repeat 1 103 0 1583 208 157 2 chrX 166688247 166688642 -10285498 + MLT2B1 LTR ERVL 1 456 -64 219 231 0 0 chrX 166688648 166688756 -10285384 + (TA)n Simple_repeat Simple_repeat 2 109 0 310 275 73 0 chrX 166688756 166688865 -10285275 + L1MC4 LINE L1 6586 6702 -1340 1387 259 28 41 chrX 166689311 166689547 -10284593 + MER119 DNA MER1_type 50 288 -295 2638 97 8 21 chrX 166689547 166689927 -10284213 + THE1C LTR MaLR 1 375 0 1387 259 28 41 chrX 166689927 166690231 -10283909 + MER119 DNA MER1_type 288 583 0 1938 156 0 13 chrX 166690454 166690769 -10283371 + AluJo SINE Alu 1 311 -1 762 238 4 61 chrX 166692500 166692731 -10281409 + MER20 DNA MER1_type 2 219 0 217 328 117 16 chrX 166692785 166692913 -10281227 - MIR SINE MIR -30 232 92 270 336 72 8 chrX 166693061 166693186 -10280954 - MIR SINE MIR -115 147 15 366 221 21 142 chrX 166693224 166693414 -10280726 + MLT1D LTR MaLR 1 167 -338 257 239 0 14 chrX 166693809 166693880 -10280260 + LTR67 LTR ERVL 427 496 -61 237 83 0 0 chrX 166693916 166693952 -10280188 + (TATG)n Simple_repeat Simple_repeat 1 36 0 811 159 28 0 chrX 166695138 166695283 -10278857 - MER20 DNA MER1_type -64 155 7 327 338 89 50 chrX 166696913 166697316 -10276824 + L2 LINE L2 2222 2640 -674 184 200 156 0 chrX 166697952 166697997 -10276143 - MIR SINE MIR -8 254 203 1271 314 71 43 chrX 166698402 166699888 -10274252 + L1ME LINE L1 285 1812 -4584 923 248 96 8 chrX 166699936 166700484 -10273656 + L1ME LINE L1 5033 5640 -595 23 68 0 0 chrX 166701202 166701246 -10272894 + AT_rich Low_complexity Low_complexity 1 44 0 2037 127 26 32 chrX 166701265 166701642 -10272498 + THE1C LTR MaLR 1 375 0 487 175 306 0 chrX 166702194 166702354 -10271786 + MER3 DNA MER1_type 1 209 0 313 224 7 147 chrX 166702466 166702609 -10271531 + MER20 DNA MER1_type 4 126 -93 853 185 6 29 chrX 166703837 166704010 -10270130 - FRAM SINE Alu -3 173 5 216 0 0 0 chrX 166705014 166705038 -10269102 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 630 365 8 8 chrX 166705903 166706163 -10267977 + MIR SINE MIR 3 262 0 246 283 243 13 chrX 166707449 166707601 -10266539 - MER5A DNA MER1_type 0 189 3 186 249 58 116 chrX 166707868 166708041 -10266099 + L2 LINE L2 3046 3208 -105 669 96 35 0 chrX 166708110 166708225 -10265915 + GA-rich Low_complexity Low_complexity 1 119 0 797 245 106 9 chrX 166708225 166708719 -10265421 - L1ME LINE L1 -525 5639 5095 195 211 33 11 chrX 166709599 166709689 -10264451 + GA-rich Low_complexity Low_complexity 5 96 0 2850 159 27 0 chrX 166710609 166711126 -10263014 - L1MA10 LINE L1 -309 5880 5350 1913 153 53 38 chrX 166711134 166711449 -10262691 + L1MA10 LINE L1 5874 6208 -126 2357 98 42 25 chrX 166711449 166711807 -10262333 - THE1B LTR MaLR 0 364 1 1913 153 53 38 chrX 166711807 166711934 -10262206 + L1MA10 LINE L1 6208 6332 -2 2118 116 0 3 chrX 166712009 166712326 -10261814 + AluSx SINE Alu 2 317 0 351 164 30 0 chrX 166712327 166712394 -10261746 - LTR51 LTR ERV1 -462 209 141 5897 143 9 27 chrX 166712502 166713574 -10260566 + Tigger1 DNA MER2_type 1366 2418 0 202 234 0 0 chrX 166713966 166714013 -10260127 + (TAA)n Simple_repeat Simple_repeat 1 47 0 193 263 91 69 chrX 166714179 166714354 -10259786 - L3 LINE CR1 -222 1355 1177 2089 94 24 3 chrX 166714788 166715117 -10259023 + THE1A LTR MaLR 18 353 -2 630 73 0 10 chrX 166715119 166715215 -10258925 + THE1A-int LTR MaLR 1 95 -1485 1071 141 40 5 chrX 166715780 166715979 -10258161 + L1MB1 LINE L1 5850 6055 -134 1070 132 55 28 chrX 166715979 166716239 -10257901 - MLT2A2 LTR ERVL 0 453 290 1414 111 36 32 chrX 166717023 166717276 -10256864 + THE1C LTR MaLR 122 375 0 232 286 24 12 chrX 166717276 166717359 -10256781 - MLT1H LTR MaLR -45 504 421 807 302 41 13 chrX 166717392 166717693 -10256447 - MLT1H LTR MaLR -196 353 1 22 56 0 0 chrX 166717831 166717867 -10256273 + AT_rich Low_complexity Low_complexity 1 36 0 419 174 0 41 chrX 166718554 166718726 -10255414 + CT-rich Low_complexity Low_complexity 1 165 0 212 167 0 19 chrX 166718738 166718792 -10255348 + CT-rich Low_complexity Low_complexity 1 53 0 7282 119 24 10 chrX 166720846 166722032 -10252108 + Tigger1 DNA MER2_type 26 1227 -1191 481 318 21 34 chrX 166724733 166724969 -10249171 - MIR SINE MIR 0 262 30 1532 78 60 0 chrX 166725013 166725230 -10248910 + MER4E LTR ERV1 537 766 0 3310 134 30 2 chrX 166725289 166725828 -10248312 - MER4E LTR ERV1 -225 554 1 1866 166 0 0 chrX 166725828 166726141 -10247999 - MER7A DNA MER2_type -34 312 2 375 206 178 7 chrX 166726142 166726288 -10247852 + MER2 DNA MER2_type 151 321 -24 590 240 16 0 chrX 166726302 166726431 -10247709 - MER2 DNA MER2_type -213 132 2 408 291 133 18 chrX 166726631 166726916 -10247224 - MLT1H LTR MaLR -220 329 12 677 262 0 0 chrX 166727663 166727808 -10246332 - FRAM SINE Alu -34 142 1 1485 170 42 3 chrX 166728107 166728418 -10245722 - MLT1B LTR MaLR -63 327 5 187 257 14 40 chrX 166729030 166729104 -10245036 - L3 LINE CR1 -709 868 797 211 355 99 0 chrX 166729434 166729555 -10244585 + MIR SINE MIR 79 211 -51 * 623 325 8 38 chrX 166729512 166729752 -10244388 - MIR SINE MIR -2 260 28 526 246 12 0 chrX 166729878 166730045 -10244095 + CT-rich Low_complexity Low_complexity 3 171 0 198 209 0 0 chrX 166730814 166730857 -10243283 + (CATG)n Simple_repeat Simple_repeat 1 43 0 189 0 0 0 chrX 166731392 166731413 -10242727 + (CA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chrX 166731750 166731773 -10242367 + AT_rich Low_complexity Low_complexity 1 23 0 235 289 0 0 chrX 166731802 166731854 -10242286 + (CA)n Simple_repeat Simple_repeat 2 53 0 244 278 124 33 chrX 166731983 166732289 -10241851 + MLT1G1 LTR MaLR 83 416 -179 231 320 0 0 chrX 166732396 166732474 -10241666 + C-rich Low_complexity Low_complexity 1 78 0 537 286 37 6 chrX 166733310 166733471 -10240669 + MIR SINE MIR 60 225 -37 1756 246 41 35 chrX 166733516 166734056 -10240084 + LTR26 LTR ERV1 61 603 0 247 291 48 10 chrX 166735318 166735421 -10238719 - MIR SINE MIR -35 227 121 604 90 13 0 chrX 166735837 166735915 -10238225 + MADE1 DNA Mariner 2 80 0 252 354 26 18 chrX 166737443 166737556 -10236584 + MIR SINE MIR 35 148 -60 2161 103 0 0 chrX 166737730 166738039 -10236101 + AluSx SINE Alu 1 309 0 1069 207 4 59 chrX 166738178 166738415 -10235725 + MER58A DNA MER1_type 1 224 0 389 171 29 0 chrX 166738644 166738714 -10235426 + MER5A DNA MER1_type 41 112 -77 448 313 103 52 chrX 166739290 166739754 -10234386 - HAL1 LINE L1 -775 1732 1245 2702 98 28 8 chrX 166739903 166740260 -10233880 - THE1B LTR MaLR 0 364 1 2052 134 0 0 chrX 166741429 166741741 -10232399 - AluSx SINE Alu 0 312 1 1612 154 0 69 chrX 166742921 166743226 -10230914 - AluJo SINE Alu -28 284 1 1613 27 0 0 chrX 166745169 166745354 -10228786 - AluYb8 SINE Alu 0 318 134 25 83 0 0 chrX 166745614 166745674 -10228466 + AT_rich Low_complexity Low_complexity 1 60 0 2726 89 46 0 chrX 166746430 166746778 -10227362 - THE1B LTR MaLR 0 364 1 336 143 0 0 chrX 166747009 166747058 -10227082 - MLT2B3 LTR ERVL 0 554 506 346 175 38 19 chrX 166747063 166747223 -10226917 + (TAGA)n Simple_repeat Simple_repeat 2 164 0 397 161 0 76 chrX 166748024 166748150 -10225990 + MER5B DNA MER1_type 1 163 -15 181 340 20 53 chrX 166748922 166749072 -10225068 + MIR SINE MIR 118 262 0 1558 172 12 56 chrX 166749478 166749797 -10224343 + AluJo SINE Alu 1 305 -7 240 283 23 23 chrX 166749938 166750111 -10224029 + (TTTG)n Simple_repeat Simple_repeat 4 176 0 231 236 0 18 chrX 166750359 166750414 -10223726 + (CATATA)n Simple_repeat Simple_repeat 6 59 0 239 167 51 0 chrX 166750419 166750480 -10223660 - MER21B LTR ERV1 -539 392 273 258 81 0 0 chrX 166750480 166750517 -10223623 + (CA)n Simple_repeat Simple_repeat 2 38 0 3450 210 104 19 chrX 166750517 166751257 -10222883 + MER21A LTR ERV1 20 822 -109 1157 80 0 58 chrX 166751257 166751445 -10222695 + THE1B LTR MaLR 1 177 -187 210 261 4 69 chrX 166752472 166752678 -10221462 + C-rich Low_complexity Low_complexity 1 192 0 24 0 0 0 chrX 166752934 166752958 -10221182 + AT_rich Low_complexity Low_complexity 1 24 0 2172 116 3 0 chrX 166753297 166753598 -10220542 - AluSp SINE Alu -11 302 1 446 322 5 34 chrX 166753790 166754333 -10219807 + CT-rich Low_complexity Low_complexity 1 526 0 1583 157 46 91 chrX 166754462 166754813 -10219327 - MER7A DNA MER2_type -12 334 2 346 340 20 20 chrX 166754860 166755010 -10219130 - MIR SINE MIR -1 261 112 294 248 133 44 chrX 166755212 166755325 -10218815 + MIR SINE MIR 93 215 -47 1149 93 5 98 chrX 166805505 166805698 -10168442 - AluSp SINE Alu -138 175 1 614 159 19 0 chrX 166806113 166806220 -10167920 + L1MA9 LINE L1 6199 6307 -5 969 173 6 0 chrX 166806344 166806506 -10167634 + Charlie3 DNA MER1_type 1 163 -2547 21 0 0 0 chrX 166806711 166806732 -10167408 + AT_rich Low_complexity Low_complexity 1 21 0 6374 52 0 20 chrX 166806941 166807324 -10166816 - L1PA6 LINE L1 0 6154 5792 2695 36 0 0 chrX 166807324 166807628 -10166512 - AluY SINE Alu -7 304 1 6374 52 0 20 chrX 166807628 166808007 -10166133 - L1PA6 LINE L1 -362 5792 5407 5119 181 28 19 chrX 166808112 166809650 -10164490 - L1M3 LINE L1 -389 5782 4223 1223 128 6 6 chrX 166810578 166810758 -10163382 + Charlie3 DNA MER1_type 2527 2706 -4 229 325 39 0 chrX 166810914 166810991 -10163149 + L2 LINE L2 2715 2794 -520 210 288 0 30 chrX 166811087 166811153 -10162987 + L2 LINE L2 3141 3204 -68 256 229 43 29 chrX 166811300 166811370 -10162770 + L2 LINE L2 3243 3313 0 1247 189 77 89 chrX 166811741 166811846 -10162294 + MER96B DNA MER1_type? 4 109 -308 3178 105 7 7 chrX 166811846 166812285 -10161855 - L1PA13 LINE L1 -1 6162 5724 1247 189 77 89 chrX 166812285 166812596 -10161544 + MER96B DNA MER1_type? 109 415 -2 21 0 0 0 chrX 166812698 166812719 -10161421 + AT_rich Low_complexity Low_complexity 1 21 0 297 264 28 0 chrX 166812834 166812906 -10161234 + MER20 DNA MER1_type 146 219 0 2087 134 10 3 chrX 166813044 166813378 -10160762 + AluSx SINE Alu 1 312 0 180 0 0 0 chrX 166813440 166813460 -10160680 + (T)n Simple_repeat Simple_repeat 1 20 0 5640 69 34 79 chrX 166814076 166815246 -10158894 + SVA Other Other 4 866 -520 1754 195 7 0 chrX 166816006 166816314 -10157826 - AluJo SINE Alu -2 310 1 517 279 73 27 chrX 166816484 166816703 -10157437 + MIR SINE MIR 28 256 -6 1145 206 106 43 chrX 166817017 166817367 -10156773 - L1MB7 LINE L1 0 6184 5813 1699 129 22 4 chrX 166817458 166817730 -10156410 + L1MA8 LINE L1 6008 6284 -7 288 296 14 0 chrX 166818089 166818160 -10155980 + L2 LINE L2 3201 3272 0 590 126 34 42 chrX 166818647 166818766 -10155374 + L1MB2 LINE L1 6052 6169 -2 1200 201 29 32 chrX 166819816 166820129 -10154011 - MER33 DNA MER1_type -12 312 1 229 348 49 24 chrX 166820535 166820699 -10153441 - L3b LINE CR1 -116 1467 1300 189 74 0 0 chrX 166821438 166821465 -10152675 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 325 167 26 0 chrX 166821483 166821561 -10152579 + (CTAGGG)n Simple_repeat Simple_repeat 1 80 0 567 285 99 43 chrX 166822090 166822465 -10151675 + MLT1J1 LTR MaLR 40 435 -11 306 231 0 0 chrX 166822829 166822894 -10151246 + HsTC2 DNA Tc2 1830 1894 -4 1136 256 93 0 chrX 166823626 166823750 -10150390 + MER58B DNA MER1_type 1 112 -2308 1606 183 14 24 chrX 166823750 166824045 -10150095 + AluJo SINE Alu 1 292 -20 1136 256 93 0 chrX 166824045 166824232 -10149908 + MER58B DNA MER1_type 112 341 0 373 263 158 53 chrX 166824247 166824399 -10149741 + MER5A DNA MER1_type 22 189 0 2641 160 11 34 chrX 166824501 166824938 -10149202 - MSTC LTR MaLR 0 428 2 26 30 0 0 chrX 166825250 166825283 -10148857 + AT_rich Low_complexity Low_complexity 1 33 0 2313 128 19 27 chrX 166825296 166825663 -10148477 + THE1B LTR MaLR 1 364 0 180 77 0 0 chrX 166828197 166828223 -10145917 + (GA)n Simple_repeat Simple_repeat 2 27 0 237 403 59 21 chrX 166828818 166829054 -10145086 - L3 LINE CR1 -1090 487 243 787 219 265 4 chrX 166829480 166829759 -10144381 + L1MC4 LINE L1 7471 7822 -220 550 303 6 12 chrX 166830145 166830307 -10143833 + MER5A DNA MER1_type 1 161 -28 207 282 35 35 chrX 166830309 166830394 -10143746 - L2 LINE L2 -2 3311 3227 709 163 108 0 chrX 166830401 166830530 -10143610 + L1MC/D LINE L1 5545 5687 -657 4066 82 0 4 chrX 166830532 166831059 -10143081 + LTR17 LTR ERV1 256 780 0 10567 54 14 86 chrX 166831059 166832588 -10141552 + HERV17 LTR ERV1 1 1420 -7206 4126 50 0 2 chrX 166832587 166833082 -10141058 + HERV17 LTR ERV1 3027 3520 -5106 * 7350 55 2 1 chrX 166833187 166834187 -10139953 - L1P LINE L1 -771 5375 4375 23 0 0 0 chrX 166834998 166835021 -10139119 + AT_rich Low_complexity Low_complexity 1 23 0 29 70 0 0 chrX 166835310 166835367 -10138773 + AT_rich Low_complexity Low_complexity 1 57 0 1949 139 7 7 chrX 166835476 166835777 -10138363 + AluSx SINE Alu 1 301 -11 602 258 235 27 chrX 166836143 166836441 -10137699 + L2 LINE L2 2131 2490 -824 549 327 59 11 chrX 166836442 166836714 -10137426 - HERV16 LTR ERVL -2025 2971 2687 709 347 53 10 chrX 166836874 166837289 -10136851 - HERV16 LTR ERVL -3249 2515 2083 376 335 59 25 chrX 166837298 166837501 -10136639 - HERV16 LTR ERVL -3060 1936 1727 430 352 50 32 chrX 166837586 166838149 -10135991 - HERV16 LTR ERVL -3476 1520 948 1780 158 10 3 chrX 166838197 166838488 -10135652 + AluJo SINE Alu 4 296 -16 767 255 0 5 chrX 166838675 166838863 -10135277 + MER5A DNA MER1_type 1 187 -2 1425 159 34 4 chrX 166839648 166839887 -10134253 - AluJo SINE Alu -12 300 55 245 135 0 122 chrX 166839919 166839993 -10134147 - LTR48 LTR ERV1 -72 715 459 741 206 21 26 chrX 166840267 166840456 -10133684 - MER39 LTR ERV1 -260 447 260 204 40 0 0 chrX 166841488 166841513 -10132627 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 630 204 6 11 chrX 166841596 166841777 -10132363 + CT-rich Low_complexity Low_complexity 1 180 0 2532 27 3 0 chrX 166841898 166842199 -10131941 + HERV17 LTR ERV1 3602 3903 -4723 * 12719 55 4 2 chrX 166842190 166843832 -10130308 + HERV17 LTR ERV1 6980 8623 -3 2623 46 0 0 chrX 166843835 166844159 -10129981 + LTR17 LTR ERV1 1 324 -456 2509 142 52 11 chrX 166844169 166844633 -10129507 + L1MC1 LINE L1 5675 6157 -176 22 0 0 0 chrX 166844666 166844688 -10129452 + AT_rich Low_complexity Low_complexity 1 22 0 236 217 14 0 chrX 166844782 166844851 -10129289 + Charlie2a DNA MER1_type 1597 1666 -1196 25 65 0 0 chrX 166844851 166844897 -10129243 + AT_rich Low_complexity Low_complexity 1 46 0 189 109 55 0 chrX 166844897 166844952 -10129188 + (TATAA)n Simple_repeat Simple_repeat 5 62 0 406 209 45 9 chrX 166844979 166845089 -10129051 + Charlie2a DNA MER1_type 2721 2834 -28 23 0 0 0 chrX 166846540 166846563 -10127577 + AT_rich Low_complexity Low_complexity 1 23 0 741 256 87 33 chrX 166847034 166847401 -10126739 + L1MEc LINE L1 869 1255 -5141 369 300 164 52 chrX 166847515 166847862 -10126278 - HAL1 LINE L1 -2106 401 16 208 274 85 19 chrX 166849416 166849522 -10124618 - L3b LINE CR1 -352 1231 1119 2072 172 18 3 chrX 166850818 166851202 -10122938 - MLT1B LTR MaLR 0 390 1 494 181 19 19 chrX 166851726 166851881 -10122259 + GA-rich Low_complexity Low_complexity 3 157 0 977 112 11 11 chrX 166851883 166852062 -10122078 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 205 182 0 0 chrX 166852072 166852105 -10122035 + polypurine Low_complexity Low_complexity 4 36 0 229 135 0 0 chrX 166852914 166852951 -10121189 + L1PB4 LINE L1 6108 6144 -12 306 125 0 0 chrX 166853094 166853142 -10120998 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 2236 110 7 10 chrX 166853142 166853452 -10120688 - AluSx SINE Alu -3 309 1 334 127 79 0 chrX 166853453 166853516 -10120624 - MER5A DNA MER1_type -113 76 9 370 182 182 0 chrX 166853873 166853950 -10120190 + MER5A DNA MER1_type 11 101 -88 245 309 73 20 chrX 166853950 166854154 -10119986 + L1MEd LINE L1 606 820 -5299 338 321 52 20 chrX 166854529 166854778 -10119362 + L1ME3 LINE L1 6 262 -5857 752 166 0 55 chrX 166854849 166854994 -10119146 - AluJo SINE Alu -175 137 1 6036 91 41 28 chrX 166855238 166856379 -10117761 - L1PA14 LINE L1 0 6161 5010 263 350 42 7 chrX 166856380 166856523 -10117617 + L1ME3 LINE L1 580 727 -5392 366 266 324 12 chrX 166856630 166856803 -10117337 - MIR SINE MIR -24 238 12 362 267 150 33 chrX 166856855 166857095 -10117045 + L1ME3 LINE L1 990 1257 -4862 246 207 0 0 chrX 166857184 166857242 -10116898 + (CA)n Simple_repeat Simple_repeat 1 58 0 413 339 48 20 chrX 166857291 166857542 -10116598 + L1ME3 LINE L1 1452 1709 -4601 376 301 176 4 chrX 166857537 166857793 -10116347 + L1ME3 LINE L1 4591 4890 -1239 * 729 246 49 79 chrX 166857794 166858225 -10115915 + L1ME3 LINE L1 5302 5719 -434 201 175 0 0 chrX 166858329 166858369 -10115771 + (TG)n Simple_repeat Simple_repeat 1 40 0 204 235 0 0 chrX 166858408 166858459 -10115681 + (TA)n Simple_repeat Simple_repeat 1 51 0 24 32 0 0 chrX 166858751 166858782 -10115358 + AT_rich Low_complexity Low_complexity 1 31 0 193 0 61 30 chrX 166858863 166858896 -10115244 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2426 29 0 0 chrX 166858896 166859175 -10114965 - AluY SINE Alu -32 279 1 25 31 0 0 chrX 166859182 166859214 -10114926 + AT_rich Low_complexity Low_complexity 1 32 0 1763 158 25 7 chrX 166860743 166861027 -10113113 + AluJo SINE Alu 1 289 -23 22 0 0 0 chrX 166861028 166861050 -10113090 + AT_rich Low_complexity Low_complexity 1 22 0 254 331 116 17 chrX 166861320 166861492 -10112648 + MIR SINE MIR 3 191 -71 2421 75 9 0 chrX 166862203 166862525 -10111615 + L1PA10 LINE L1 5839 6163 -5 603 217 19 10 chrX 166863552 166863933 -10110207 + CT-rich Low_complexity Low_complexity 1 384 0 307 294 50 25 chrX 166864053 166864213 -10109927 + L1ME3 LINE L1 5928 6091 -54 22 0 0 0 chrX 166864265 166864287 -10109853 + AT_rich Low_complexity Low_complexity 1 22 0 1652 157 17 53 chrX 166864287 166864586 -10109554 + AluJo SINE Alu 1 288 -24 627 159 0 0 chrX 166864788 166864901 -10109239 + CT-rich Low_complexity Low_complexity 3 115 0 1959 156 0 3 chrX 166864903 166865204 -10108936 - AluSx SINE Alu -12 300 1 876 252 48 5 chrX 166866455 166866665 -10107475 - MER20 DNA MER1_type 0 219 1 263 263 38 68 chrX 166866948 166867081 -10107059 - L2 LINE L2 -505 2809 2681 2521 80 0 0 chrX 166867497 166867808 -10106332 + AluSx SINE Alu 1 311 -1 1049 24 0 0 chrX 166867934 166868058 -10106082 + L1PA5 LINE L1 6028 6151 -3 1407 152 27 35 chrX 166868164 166868420 -10105720 + AluJo SINE Alu 43 296 -16 249 111 0 48 chrX 166870342 166870405 -10103735 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 398 9 9 chrX 166870531 166870639 -10103501 - L2 LINE L2 0 3313 3206 423 0 0 0 chrX 166870828 166870875 -10103265 + (TA)n Simple_repeat Simple_repeat 1 47 0 2119 173 14 33 chrX 166871151 166871458 -10102682 - LOR1b LTR ERV1 0 461 163 2438 74 0 10 chrX 166871458 166871756 -10102384 - AluSc SINE Alu -13 296 2 2119 173 14 33 chrX 166871756 166871876 -10102264 - LOR1b LTR ERV1 -298 163 42 1367 208 220 87 chrX 166871979 166872878 -10101262 - LTR28 LTR ERV1 -1 1019 1 356 306 54 43 chrX 166872880 166873138 -10101002 + L2 LINE L2 2716 2976 -338 1160 204 14 0 chrX 166874407 166874623 -10099517 - MER20 DNA MER1_type 0 219 1 362 294 41 69 chrX 166874773 166874911 -10099229 - MIR SINE MIR -15 247 112 524 242 101 39 chrX 166874911 166875089 -10099051 - MER5A DNA MER1_type 0 189 1 362 294 41 69 chrX 166875089 166875196 -10098944 - MIR SINE MIR -150 112 3 21 0 0 0 chrX 166876653 166876674 -10097466 + AT_rich Low_complexity Low_complexity 1 21 0 293 356 46 19 chrX 166876842 166877103 -10097037 + L2 LINE L2 1637 1904 -1410 912 223 65 65 chrX 166877129 166877557 -10096583 + L1ME1 LINE L1 5722 6152 -14 3910 107 25 66 chrX 166877557 166878238 -10095902 + MER39B LTR ERV1 1 653 0 912 223 65 65 chrX 166878238 166878254 -10095886 + L1ME1 LINE L1 6151 6166 0 22 35 0 0 chrX 166879693 166879722 -10094418 + AT_rich Low_complexity Low_complexity 1 29 0 608 293 31 54 chrX 166879740 166879999 -10094141 - MIR SINE MIR -2 260 8 332 283 28 19 chrX 166882078 166882175 -10091965 + MLT2E LTR ERVL 19 116 -512 1497 147 21 35 chrX 166882175 166882461 -10091679 + LTR39 LTR ERV1 1 282 -501 1620 214 54 2 chrX 166882643 166883027 -10091113 + LTR39 LTR ERV1 297 783 0 396 374 18 13 chrX 166883126 166883353 -10090787 + MLT2F LTR ERVL 230 457 -206 233 270 14 0 chrX 166883451 166883525 -10090615 + MLT2E LTR ERVL 196 270 -358 184 318 15 15 chrX 166883584 166883650 -10090490 - MIR SINE MIR -176 86 21 396 55 0 0 chrX 166885259 166885314 -10088826 + (CA)n Simple_repeat Simple_repeat 1 55 0 333 0 0 0 chrX 166885571 166885608 -10088532 + (TG)n Simple_repeat Simple_repeat 1 37 0 259 200 11 11 chrX 166885610 166885700 -10088440 + GA-rich Low_complexity Low_complexity 2 91 0 230 140 0 20 chrX 166885691 166885741 -10088399 + (GGA)n Simple_repeat Simple_repeat 2 50 0 * 261 133 0 147 chrX 166886017 166886092 -10088048 + MER21B LTR ERV1 1 64 -799 3399 204 41 34 chrX 166886127 166886360 -10087780 + MER21B LTR ERV1 18 248 -615 1272 217 19 53 chrX 166886360 166886738 -10087402 - MLT1A1 LTR MaLR 0 365 1 3399 204 41 34 chrX 166886738 166886814 -10087326 + MER21B LTR ERV1 248 322 -541 2500 108 14 3 chrX 166886814 166887183 -10086957 - THE1C LTR MaLR -2 373 1 3399 204 41 34 chrX 166887183 166887700 -10086440 + MER21B LTR ERV1 322 851 -12 1057 193 5 14 chrX 166888035 166888247 -10085893 + MER20 DNA MER1_type 5 214 -5 1983 155 0 3 chrX 166888845 166889141 -10084999 - AluSx SINE Alu -17 295 1 1606 175 0 71 chrX 166889464 166889790 -10084350 - AluJb SINE Alu -1 311 9 339 180 22 0 chrX 166889907 166889996 -10084144 - Charlie2 DNA MER1_type -37 2825 2735 23 0 0 0 chrX 166890577 166890600 -10083540 + AT_rich Low_complexity Low_complexity 1 23 0 189 435 24 24 chrX 166891109 166891279 -10082861 + L2 LINE L2 3006 3175 -97 746 102 0 25 chrX 166891306 166891424 -10082716 - FLAM_C SINE Alu -5 138 24 196 205 26 0 chrX 166891440 166891479 -10082661 + L2 LINE L2 3274 3313 0 2124 87 18 0 chrX 166892199 166892522 -10081618 - AluSg SINE Alu 0 328 1 544 262 154 0 chrX 166892652 166892801 -10081339 - MER5A DNA MER1_type -6 183 12 224 214 36 0 chrX 166892967 166893023 -10081117 + (TA)n Simple_repeat Simple_repeat 1 58 0 1530 137 0 0 chrX 166893023 166893257 -10080883 - MER46A DNA MER2_type 0 236 3 2048 205 51 8 chrX 166893651 166894119 -10080021 - LTR39 LTR ERV1 -2 781 294 625 103 0 0 chrX 166894220 166894307 -10079833 + THE1A LTR MaLR 269 355 0 3378 134 35 7 chrX 166894407 166894972 -10079168 - L1PA16 LINE L1 -3 6163 5583 247 209 11 22 chrX 166896869 166896960 -10077180 + L1MC4 LINE L1 6614 6703 -1339 284 224 8 136 chrX 166896999 166897124 -10077016 + MER21B LTR ERV1 1 109 -754 1733 254 77 47 chrX 166897157 166897845 -10076295 + MER21B LTR ERV1 98 806 -57 3347 147 92 43 chrX 166897949 166898699 -10075441 + LTR48 LTR ERV1 1 787 0 369 264 0 0 chrX 166898751 166898838 -10075302 + MIR SINE MIR 71 157 -105 487 248 131 44 chrX 166899066 166899272 -10074868 + MER58A DNA MER1_type 1 224 0 250 228 25 13 chrX 166900247 166900326 -10073814 + L1MC2 LINE L1 6254 6333 -11 2477 115 42 12 chrX 166900353 166900762 -10073378 + L1MC1 LINE L1 5911 6331 -2 21 36 0 0 chrX 166900790 166900818 -10073322 + AT_rich Low_complexity Low_complexity 1 28 0 1605 165 18 0 chrX 166901348 166901621 -10072519 - AluJo SINE Alu -1 311 34 21 0 0 0 chrX 166902807 166902828 -10071312 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chrX 166903452 166903482 -10070658 + AT_rich Low_complexity Low_complexity 1 30 0 231 146 0 0 chrX 166903589 166903630 -10070510 - L1PA16 LINE L1 -19 6147 6107 * 4674 241 30 19 chrX 166903628 166904503 -10069637 - L1PA12 LINE L1 -3091 4493 3629 2319 113 0 0 chrX 166904503 166904804 -10069336 - AluSx SINE Alu -11 301 1 4674 241 30 19 chrX 166904804 166906196 -10067944 - L1PA12 LINE L1 -3955 3629 2182 324 278 0 0 chrX 166906430 166906527 -10067613 - L1PA12 LINE L1 -5399 2182 2086 796 360 17 19 chrX 166906695 166907275 -10066865 - L1PA12 LINE L1 -6208 1366 788 23 33 0 0 chrX 166907897 166907927 -10066213 + AT_rich Low_complexity Low_complexity 1 30 0 206 342 13 0 chrX 166908576 166908655 -10065485 + L2 LINE L2 3195 3274 -39 312 94 0 0 chrX 166908839 166908892 -10065248 + (TG)n Simple_repeat Simple_repeat 2 54 0 286 321 72 10 chrX 166911893 166912102 -10062038 - LTR16A LTR ERVL 0 450 229 341 306 12 38 chrX 166912843 166913003 -10061137 - LTR16A LTR ERVL -242 208 53 218 254 60 0 chrX 166915071 166915138 -10059002 + MIR SINE MIR 133 203 -59 389 202 34 42 chrX 166916026 166916145 -10057995 + MIR SINE MIR 97 214 -48 202 255 20 0 chrX 166916559 166916610 -10057530 + L2 LINE L2 3243 3294 -19 2298 84 17 0 chrX 166917329 166917625 -10056515 - AluSg SINE Alu -9 301 1 11787 153 35 23 chrX 166917863 166921297 -10052843 - L1MA6 LINE L1 0 6300 2837 2208 243 23 11 chrX 166921296 166922064 -10052076 + L1MA6 LINE L1 3474 4257 -3308 * 342 354 68 57 chrX 166922067 166922420 -10051720 + L2 LINE L2 2916 3272 0 481 357 21 12 chrX 166922502 166922743 -10051397 + MIR SINE MIR 18 260 -2 5233 143 32 11 chrX 166923222 166924668 -10049472 - L1PB1 LINE L1 -1 6150 4676 22 0 0 0 chrX 166925684 166925706 -10048434 + AT_rich Low_complexity Low_complexity 1 22 0 823 187 0 75 chrX 166926313 166926500 -10047640 + MER20 DNA MER1_type 16 188 -31 207 293 73 49 chrX 166926660 166926783 -10047357 - MIR SINE MIR -67 141 16 390 42 0 0 chrX 166926818 166926866 -10047274 + (TG)n Simple_repeat Simple_repeat 1 48 0 7109 54 5 32 chrX 166928000 166929064 -10045076 + SVA Other Other 433 1386 0 25 0 0 0 chrX 166929064 166929089 -10045051 + AT_rich Low_complexity Low_complexity 1 25 0 2087 135 0 0 chrX 166929394 166929698 -10044442 - AluSx SINE Alu -8 304 1 3020 74 19 83 chrX 166929794 166930266 -10043874 - MLT2A1 LTR ERVL 0 444 3 200 229 29 29 chrX 166930432 166930502 -10043638 + CT-rich Low_complexity Low_complexity 3 72 0 561 133 0 0 chrX 166931376 166931474 -10042666 - MER31A LTR ERV1 0 485 388 272 247 22 22 chrX 166931514 166931603 -10042537 + GA-rich Low_complexity Low_complexity 2 90 0 2372 111 5 39 chrX 166931607 166932014 -10042126 - MER31A LTR ERV1 -92 393 1 354 23 0 0 chrX 166932210 166932253 -10041887 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 42 0 0 chrX 166932252 166932276 -10041864 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 2183 114 0 7 chrX 166932394 166932693 -10041447 - AluSg SINE Alu -11 299 3 2442 156 24 69 chrX 166933558 166934097 -10040043 + MLT2B3 LTR ERVL 1 515 -39 752 156 6 17 chrX 166934123 166934302 -10039838 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 182 190 0 17 chrX 166934319 166934377 -10039763 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 566 169 20 14 chrX 166934391 166934539 -10039601 + (TCTA)n Simple_repeat Simple_repeat 1 149 0 278 162 0 73 chrX 166934539 166934607 -10039533 + MLT2B3 LTR ERVL 458 554 0 1183 213 66 39 chrX 166935099 166935478 -10038662 - LTR10C LTR ERV1 -42 591 188 1033 145 0 54 chrX 166937105 166937291 -10036849 - AluJb SINE Alu 0 312 137 1791 193 7 0 chrX 166937329 166937625 -10036515 + AluJo SINE Alu 1 298 -14 447 260 73 26 chrX 166937815 166938007 -10036133 + MIR SINE MIR 32 232 -30 1654 179 7 13 chrX 166938515 166938817 -10035323 + AluJo SINE Alu 3 302 -10 600 249 30 67 chrX 166939030 166939299 -10034841 + MLT1J1 LTR MaLR 13 271 -175 1999 135 27 10 chrX 166939318 166940163 -10033977 + L1MA7 LINE L1 5178 6275 -16 575 149 0 0 chrX 166940163 166940268 -10033872 + L1MA7 LINE L1 6175 6281 -10 415 216 11 22 chrX 166940782 166940963 -10033177 + (TA)n Simple_repeat Simple_repeat 1 179 0 410 175 34 23 chrX 166941002 166941179 -10032961 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 31 0 0 chrX 166943167 166943199 -10030941 + (TG)n Simple_repeat Simple_repeat 2 33 0 42562 32 1 2 chrX 166943310 166949470 -10024670 + L1PA3 LINE L1 5 6155 0 2347 104 3 0 chrX 166949865 166950174 -10023966 + AluSx SINE Alu 1 310 -2 3963 192 33 37 chrX 166950859 166951017 -10023123 + L1MB2 LINE L1 5112 5269 -902 324 0 0 0 chrX 166951017 166951053 -10023087 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 3963 192 33 37 chrX 166951053 166951952 -10022188 + L1MB2 LINE L1 5269 6168 -3 1814 186 0 3 chrX 166951982 166952277 -10021863 + AluJb SINE Alu 7 300 -12 559 236 172 16 chrX 166952977 166953227 -10020913 - LTR50 LTR ERVL -506 289 1 466 228 10 0 chrX 166953399 166953500 -10020640 + MLT2C1 LTR ERVL 248 349 -48 478 0 16 16 chrX 166953516 166953579 -10020561 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1321 150 54 111 chrX 166953589 166953975 -10020165 + MLT1A1 LTR MaLR 2 365 0 429 20 0 0 chrX 166953989 166954039 -10020101 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 23 0 0 0 chrX 166955843 166955866 -10018274 + AT_rich Low_complexity Low_complexity 1 23 0 416 241 39 24 chrX 166955903 166956110 -10018030 - L1M4 LINE L1 -801 5345 5136 1813 160 32 29 chrX 166956656 166957030 -10017110 + THE1C LTR MaLR 1 375 0 809 163 0 30 chrX 166958834 166958969 -10015171 - FLAM_C SINE Alu 0 133 3 2145 135 33 33 chrX 166959661 166960025 -10014115 - THE1B LTR MaLR 0 364 1 1011 240 71 5 chrX 166960071 166960450 -10013690 + L1M4 LINE L1 4015 4418 -1728 1606 318 21 27 chrX 166960680 166961306 -10012834 - L2 LINE L2 -871 2443 1822 1535 134 4 13 chrX 166961448 166961679 -10012461 - AluJb SINE Alu -83 229 1 1849 155 47 0 chrX 166963473 166963769 -10010371 - AluJb SINE Alu -2 310 1 1444 287 99 2 chrX 166963779 166964372 -10009768 - L1ME3 LINE L1 -66 6096 5446 242 130 0 65 chrX 166965260 166965306 -10008834 - L2 LINE L2 -4 3309 3267 2329 116 36 28 chrX 166965451 166965812 -10008328 + THE1B LTR MaLR 1 364 0 22 35 0 0 chrX 166966712 166966741 -10007399 + AT_rich Low_complexity Low_complexity 1 29 0 730 215 51 11 chrX 166967214 166967391 -10006749 + MER58A DNA MER1_type 30 213 -11 208 209 23 0 chrX 166967404 166967447 -10006693 - MIR3 SINE MIR -50 158 115 1898 144 33 10 chrX 166967504 166967809 -10006331 + AluJb SINE Alu 1 312 0 1129 256 26 35 chrX 166968129 166968473 -10005667 + MER58B DNA MER1_type 1 341 0 226 204 0 0 chrX 166969008 166969057 -10005083 - MLT2D LTR ERVL 0 464 416 291 218 0 0 chrX 166969112 166969167 -10004973 + MLT2D LTR ERVL 317 371 -43 732 226 62 87 chrX 166969242 166969560 -10004580 - MLT2D LTR ERVL -48 416 105 761 181 0 0 chrX 166969560 166969693 -10004447 + L1MA2 LINE L1 6172 6304 0 732 226 62 87 chrX 166969693 166969791 -10004349 - MLT2D LTR ERVL -359 105 6 22 35 0 0 chrX 166970094 166970123 -10004017 + AT_rich Low_complexity Low_complexity 1 29 0 680 189 0 0 chrX 166970480 166970591 -10003549 + FRAM SINE Alu 36 146 -30 453 36 0 0 chrX 166970591 166970646 -10003494 + (TAAA)n Simple_repeat Simple_repeat 3 57 0 312 291 0 0 chrX 166970681 166970767 -10003373 + A-rich Low_complexity Low_complexity 5 90 0 1598 219 40 31 chrX 166970769 166971221 -10002919 + L1MC3 LINE L1 7329 7784 -1 25 51 0 0 chrX 166972583 166972622 -10001518 + AT_rich Low_complexity Low_complexity 1 39 0 391 344 205 12 chrX 166972869 166973128 -10001012 - L3 LINE CR1 -1088 489 181 1542 254 113 30 chrX 166973930 166974622 -9999518 - L1ME2 LINE L1 -66 6098 5350 425 223 127 6 chrX 166974631 166974788 -9999352 - L1MC4a LINE L1 -3 7805 7630 481 264 35 15 chrX 166974919 166975116 -9999024 - L1MC4a LINE L1 -1846 5962 5762 1371 165 29 62 chrX 166975215 166975341 -9998799 + AluJb SINE Alu 24 153 -159 2110 70 0 7 chrX 166975341 166975613 -9998527 + AluY SINE Alu 42 311 0 1371 165 29 62 chrX 166975613 166975759 -9998381 + AluJb SINE Alu 153 287 -25 196 347 42 21 chrX 166976438 166976533 -9997607 - L3 LINE CR1 -1269 308 212 466 221 21 0 chrX 166977533 166977678 -9996462 + GA-rich Low_complexity Low_complexity 2 149 0 267 273 45 66 chrX 166978186 166978384 -9995756 - LTR33 LTR ERVL -25 496 303 232 244 168 34 chrX 166978765 166978884 -9995256 + L2 LINE L2 3161 3295 -18 252 0 0 0 chrX 166979753 166979781 -9994359 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 6669 48 8 0 chrX 166979879 166981037 -9993103 + L1PA4 LINE L1 4925 6092 -63 2053 130 13 26 chrX 167381038 167381345 -9592795 - AluSx SINE Alu -9 303 1 880 153 0 7 chrX 167381345 167381482 -9592658 - AluJo SINE Alu -175 137 2 249 159 0 0 chrX 167381842 167381886 -9592254 + (TG)n Simple_repeat Simple_repeat 2 45 0 581 206 0 56 chrX 167382224 167382350 -9591790 + FLAM_A SINE Alu 1 119 -14 2283 90 0 7 chrX 167382703 167383003 -9591137 - AluY SINE Alu -13 298 1 280 271 21 0 chrX 167383310 167383406 -9590734 - MER103 DNA DNA -49 117 20 228 67 0 0 chrX 167385674 167385704 -9588436 + (T)n Simple_repeat Simple_repeat 1 30 0 227 74 93 0 chrX 167385818 167385872 -9588268 + (CAATA)n Simple_repeat Simple_repeat 2 60 0 1850 130 0 0 chrX 167386170 167386431 -9587709 + AluSx SINE Alu 48 308 -4 1559 178 29 7 chrX 167386486 167386767 -9587373 + AluJo SINE Alu 1 287 -25 22 0 0 0 chrX 167386767 167386789 -9587351 + AT_rich Low_complexity Low_complexity 1 22 0 2244 81 10 7 chrX 167387165 167387462 -9586678 - AluY SINE Alu -13 298 1 1083 156 0 23 chrX 167387467 167387640 -9586500 - AluJb SINE Alu -22 290 122 297 286 0 0 chrX 167388356 167388447 -9585693 + MIR SINE MIR 63 153 -109 320 302 47 31 chrX 167388861 167388990 -9585150 + L2 LINE L2 3139 3269 -3 306 241 124 58 chrX 167390164 167390301 -9583839 - L2 LINE L2 -5 3308 3163 646 284 66 0 chrX 167390384 167390567 -9583573 + MIR SINE MIR 30 224 -38 242 294 139 17 chrX 167390588 167390768 -9583372 - L2 LINE L2 -558 2756 2555 653 254 74 11 chrX 167391602 167391791 -9582349 + MIR SINE MIR 59 259 -3 325 325 17 17 chrX 167392529 167392646 -9581494 - L2 LINE L2 0 3272 3156 763 265 68 20 chrX 167394661 167394910 -9579230 - MIR SINE MIR 0 262 2 308 262 134 30 chrX 167395047 167395211 -9578929 - L1ME4a LINE L1 -137 6378 6198 1642 152 61 7 chrX 167395749 167396045 -9578095 - AluJb SINE Alu 0 312 1 291 320 39 0 chrX 167397185 167397363 -9576777 - L1ME4a LINE L1 -1348 5192 5008 1548 260 73 8 chrX 167397752 167398383 -9575757 - L1ME4a LINE L1 -3194 3346 2675 29 28 0 0 chrX 167398396 167398432 -9575708 + AT_rich Low_complexity Low_complexity 1 36 0 4496 71 2 5 chrX 167398432 167399021 -9575119 - L1PA6 LINE L1 -6 6148 5562 1877 243 60 56 chrX 167399027 167399171 -9574969 - L1MDa LINE L1 -3891 2649 2507 2281 84 0 0 chrX 167399171 167399456 -9574684 - AluY SINE Alu -26 285 1 1877 243 60 56 chrX 167399456 167400480 -9573660 - L1MDa LINE L1 -4033 2507 1471 2255 89 0 22 chrX 167400620 167400933 -9573207 + AluY SINE Alu 1 306 -5 593 325 16 28 chrX 167400939 167401262 -9572878 - L1MDa LINE L1 -5997 724 406 2248 163 64 14 chrX 167401305 167401740 -9572400 - MSTB2 LTR MaLR 0 457 1 259 257 98 0 chrX 167401752 167401915 -9572225 - L1MEd LINE L1 -1744 4385 4203 466 278 102 68 chrX 167401991 167402912 -9571228 - L1MEd LINE L1 -2123 4006 3029 2155 120 3 0 chrX 167402912 167403213 -9570927 - AluSx SINE Alu -10 302 1 466 278 102 68 chrX 167403213 167403544 -9570596 - L1MEd LINE L1 -3100 3029 2711 403 271 64 17 chrX 167403631 167403867 -9570273 - L1MEd LINE L1 -4914 1205 959 21 0 0 0 chrX 167403998 167404019 -9570121 + AT_rich Low_complexity Low_complexity 1 21 0 9999 58 5 83 chrX 167404022 167405507 -9568633 - SVA Other Other -17 1369 1 503 301 7 0 chrX 167405519 167405662 -9568478 - L1MEd LINE L1 -5390 729 586 317 272 112 32 chrX 167405682 167405807 -9568333 - L1MEd LINE L1 -5663 456 322 218 250 92 0 chrX 167406968 167407044 -9567096 + L2 LINE L2 3188 3270 -2 1274 107 51 0 chrX 167407242 167407458 -9566682 - L1MA8 LINE L1 -69 6222 5996 882 310 87 42 chrX 167407476 167407596 -9566544 + L2 LINE L2 2622 2735 -578 2153 132 0 3 chrX 167407596 167407907 -9566233 + AluSx SINE Alu 1 310 -2 882 310 87 42 chrX 167407907 167408437 -9565703 + L2 LINE L2 2735 3313 0 284 303 11 22 chrX 167408445 167408534 -9565606 - L2 LINE L2 -5 3267 3180 191 400 0 0 chrX 167409600 167409660 -9564480 + L3b LINE CR1 1522 1581 -2 317 316 149 30 chrX 167409982 167410150 -9563990 + MER5A DNA MER1_type 2 189 0 554 313 56 5 chrX 167410376 167410571 -9563569 + MIR SINE MIR 36 240 -22 1404 197 54 7 chrX 167410790 167411069 -9563071 - AluJo SINE Alu -20 292 1 279 280 39 61 chrX 167411699 167411885 -9562255 - MIR SINE MIR -52 210 30 594 216 46 5 chrX 167412366 167412560 -9561580 - L1ME3A LINE L1 -223 5930 5729 631 269 96 18 chrX 167413341 167413888 -9560252 - L1ME3A LINE L1 -749 5380 4945 847 277 69 6 chrX 167414011 167414477 -9559663 - L1ME3A LINE L1 -2762 3367 2873 3428 166 37 23 chrX 167414477 167415202 -9558938 - L1MB3 LINE L1 -1 6182 5448 1224 309 74 44 chrX 167415228 167416438 -9557702 - L1ME3A LINE L1 -4863 1256 11 8947 35 8 0 chrX 167417026 167418898 -9555242 - L1PA4 LINE L1 -23 6132 4246 2379 87 0 0 chrX 167418918 167419217 -9554923 - AluSg SINE Alu -11 299 1 368 303 79 30 chrX 167420972 167421137 -9553003 - MIR SINE MIR -56 206 34 628 273 46 147 chrX 167421746 167422244 -9551896 - L2 LINE L2 0 3313 2866 263 322 134 34 chrX 167422530 167422679 -9551461 + MIR SINE MIR 28 191 -71 24 53 0 0 chrX 167423895 167423933 -9550207 + AT_rich Low_complexity Low_complexity 1 38 0 209 116 0 87 chrX 167424014 167424083 -9550057 + (TTCTC)n Simple_repeat Simple_repeat 3 65 0 2057 225 97 18 chrX 167424130 167425495 -9548645 - L1MC4 LINE L1 -179 7863 6359 1641 220 78 15 chrX 167425496 167425589 -9548551 - L1ME2 LINE L1 -11 6153 6067 1278 115 8 30 chrX 167425589 167425824 -9548316 + L1MA8 LINE L1 6057 6286 -5 1641 220 78 15 chrX 167425824 167426194 -9547946 - L1ME2 LINE L1 -97 6067 5661 2228 106 10 13 chrX 167426194 167426505 -9547635 - AluSx SINE Alu -2 310 1 2869 224 40 36 chrX 167426581 167427164 -9546976 - L1ME1 LINE L1 -50 6116 5537 230 0 33 0 chrX 167427164 167427194 -9546946 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1730 128 48 11 chrX 167427198 167427471 -9546669 - AluSq SINE Alu -30 283 1 2869 224 40 36 chrX 167427471 167427723 -9546417 - L1ME1 LINE L1 -631 5535 5272 390 333 47 8 chrX 167427827 167427956 -9546184 + MIR SINE MIR 8 141 -121 2326 78 3 0 chrX 167427968 167428261 -9545879 + L1PA6 LINE L1 5861 6154 0 404 234 11 21 chrX 167428265 167428359 -9545781 - MIR SINE MIR 0 262 170 1336 237 34 11 chrX 167428361 167428741 -9545399 - L1ME1 LINE L1 -856 5290 4902 432 324 43 36 chrX 167428749 167429002 -9545138 + L2 LINE L2 2720 2974 -340 186 292 97 56 chrX 167429141 167429213 -9544927 + L2 LINE L2 3136 3210 -62 192 170 170 0 chrX 167429460 167429507 -9544633 + L2 LINE L2 49 103 -3211 234 0 0 0 chrX 167431620 167431646 -9542494 + (CA)n Simple_repeat Simple_repeat 2 27 0 290 229 121 0 chrX 167432075 167432158 -9541982 - MER58 DNA MER1_type -2326 94 2 512 79 0 0 chrX 167433316 167433392 -9540748 + L1MA2 LINE L1 6229 6304 0 480 305 43 0 chrX 167433540 167433704 -9540436 + MIR SINE MIR 35 205 -57 21 36 0 0 chrX 167434521 167434549 -9539591 + AT_rich Low_complexity Low_complexity 1 28 0 245 59 0 0 chrX 167434593 167434627 -9539513 - L1MA9 LINE L1 0 6312 6279 234 0 0 0 chrX 167435710 167435736 -9538404 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1530 165 4 0 chrX 167435740 167435982 -9538158 - AluJb SINE Alu -36 276 34 1145 159 55 15 chrX 167436194 167436395 -9537745 + MER3 DNA MER1_type 1 209 0 223 352 0 0 chrX 167436602 167436673 -9537467 - L2 LINE L2 -1 3312 3242 494 311 173 3 chrX 167436770 167437088 -9537052 - L2 LINE L2 -830 2484 2113 26 74 0 0 chrX 167437145 167437199 -9536941 + AT_rich Low_complexity Low_complexity 1 54 0 73 46 0 0 chrX 167437264 167437372 -9536768 + AT_rich Low_complexity Low_complexity 1 108 0 216 0 0 0 chrX 167438476 167438500 -9535640 + (CTG)n Simple_repeat Simple_repeat 2 25 0 555 218 23 80 chrX 167439162 167439352 -9534788 + MIR3 SINE MIR 18 193 -41 438 292 7 28 chrX 167439362 167439506 -9534634 + L2 LINE L2 3173 3313 0 1989 255 42 24 chrX 167440423 167441015 -9533125 + L1MEc LINE L1 35 637 -5759 556 240 70 60 chrX 167441522 167441722 -9532418 - MIR SINE MIR -42 220 19 2360 231 61 137 chrX 167441863 167442058 -9532082 - L2 LINE L2 -4 3309 3101 2462 84 0 3 chrX 167442058 167442368 -9531772 + AluSg SINE Alu 1 309 -1 2360 231 61 137 chrX 167442368 167443003 -9531137 - L2 LINE L2 -212 3101 2419 2334 88 3 0 chrX 167443003 167443298 -9530842 - AluSq SINE Alu -17 296 1 2360 231 61 137 chrX 167443298 167443539 -9530601 - L2 LINE L2 -894 2419 2161 1023 152 0 0 chrX 167443539 167443717 -9530423 + CT-rich Low_complexity Low_complexity 1 178 0 2360 231 61 137 chrX 167443717 167443768 -9530372 - L2 LINE L2 -1152 2161 2108 1596 218 7 7 chrX 167443768 167444076 -9530064 - AluJb SINE Alu -4 308 1 2360 231 61 137 chrX 167444076 167444574 -9529566 - L2 LINE L2 -1205 2108 1823 19055 44 5 2 chrX 167444660 167447677 -9526463 - L1PA5 LINE L1 0 6154 3132 269 289 239 7 chrX 167448781 167448923 -9525217 + MIR3 SINE MIR 11 185 -23 2518 57 0 7 chrX 167450678 167450979 -9523161 + AluY SINE Alu 1 299 -12 6709 214 153 40 chrX 167451241 167452427 -9521713 - L1MD3 LINE L1 -9 7986 6935 185 0 0 39 chrX 167452427 167452453 -9521687 + (CAA)n Simple_repeat Simple_repeat 2 26 0 6709 214 153 40 chrX 167452453 167453460 -9520680 - L1MD3 LINE L1 -1060 6935 5546 207 164 218 0 chrX 167454944 167454999 -9519141 + MIR SINE MIR 77 143 -119 440 296 172 0 chrX 167455245 167455431 -9518709 + L3 LINE CR1 1065 1282 -295 3569 56 0 9 chrX 167455838 167455858 -9518282 - L1P LINE L1 -1976 4170 4151 7614 46 6 0 chrX 167455858 167457473 -9516667 - L1PA4 LINE L1 -4 6151 4530 3569 56 0 9 chrX 167457473 167457899 -9516241 - L1P LINE L1 -1995 4151 3728 * 4057 37 0 0 chrX 167457890 167458380 -9515760 + L1P LINE L1 3203 3692 -2454 730 177 57 8 chrX 167458385 167458509 -9515631 - FLAM_A SINE Alu -3 130 1 239 121 15 45 chrX 167458615 167458681 -9515459 + (TA)n Simple_repeat Simple_repeat 1 64 0 5184 127 22 5 chrX 167458745 167459532 -9514608 - L1MA4 LINE L1 -15 6285 5486 310 279 24 101 chrX 167459576 167459873 -9514267 + L2 LINE L2 2581 2854 -460 338 256 50 33 chrX 167460016 167460137 -9514003 + MIR SINE MIR 140 262 0 258 349 72 26 chrX 167460198 167460350 -9513790 + MIR3 SINE MIR 47 205 -3 289 243 0 0 chrX 167461647 167461721 -9512419 + (CAG)n Simple_repeat Simple_repeat 3 76 0 219 235 0 0 chrX 167461742 167461840 -9512300 + GA-rich Low_complexity Low_complexity 3 100 0 221 304 0 0 chrX 167461843 167461935 -9512205 + (CAG)n Simple_repeat Simple_repeat 1 92 0 239 281 16 0 chrX 167462735 167462799 -9511341 + L2 LINE L2 3246 3310 -3 251 218 36 18 chrX 167462952 167463007 -9511133 - MER5A DNA MER1_type -87 102 47 290 318 9 27 chrX 167463016 167463126 -9511014 + MIR SINE MIR 17 124 -84 844 194 6 28 chrX 167466900 167467080 -9507060 + MLT1A2 LTR MaLR 4 179 -195 180 111 0 0 chrX 167467094 167467121 -9507019 + (CACG)n Simple_repeat Simple_repeat 3 29 0 406 281 16 8 chrX 167467121 167467242 -9506898 + MLT1A2 LTR MaLR 181 302 -88 270 319 11 0 chrX 167469350 167469441 -9504699 + MIR SINE MIR 67 158 -104 779 309 146 15 chrX 167470718 167471398 -9502742 + L2 LINE L2 1057 1825 -1489 986 237 57 4 chrX 167471417 167471436 -9502704 + MLT1B LTR MaLR 151 168 -222 180 0 0 0 chrX 167471436 167471456 -9502684 + (TC)n Simple_repeat Simple_repeat 1 20 0 986 237 57 4 chrX 167471456 167471664 -9502476 + MLT1B LTR MaLR 168 390 0 351 102 20 0 chrX 167471664 167471712 -9502428 + MLT1A2 LTR MaLR 418 466 -1 531 244 177 50 chrX 167471715 167472146 -9501994 + L2 LINE L2 2453 3044 -269 611 301 136 29 chrX 167473211 167473690 -9500450 + L1ME4a LINE L1 5295 5824 -297 304 292 93 49 chrX 167473892 167474420 -9499720 + L1ME4a LINE L1 4157 4707 -1439 446 278 97 32 chrX 167475064 167475312 -9498828 + L1ME4a LINE L1 5858 6121 0 231 293 40 0 chrX 167475378 167475453 -9498687 + L1ME4a LINE L1 5969 6046 -75 593 290 65 33 chrX 167475556 167475832 -9498308 - L2 LINE L2 -57 3256 2972 276 290 130 10 chrX 167475899 167475999 -9498141 - REP3 LTR ERV -135 427 316 1058 108 0 0 chrX 167476039 167476178 -9497962 - MLT1A1 LTR MaLR 0 365 227 594 192 8 48 chrX 167476186 167476311 -9497829 - MLT1A1 LTR MaLR -245 120 1 864 239 37 18 chrX 167476311 167476529 -9497611 - REP3 LTR ERV -294 268 47 623 276 39 6 chrX 167476542 167476723 -9497417 + L2 LINE L2 2888 3074 -239 15958 135 17 30 chrX 167476728 167478515 -9495625 + L1M1 LINE L1 17 1766 -5799 276 30 0 0 chrX 167478515 167478548 -9495592 + (GA)n Simple_repeat Simple_repeat 2 34 0 15958 135 17 30 chrX 167478548 167479232 -9494908 + L1M1 LINE L1 1766 2457 -5108 3985 262 232 23 chrX 167479288 167481427 -9492713 + L2 LINE L2 674 3299 -14 2243 170 8 14 chrX 167481428 167481820 -9492320 - MLT1B LTR MaLR 0 467 1 787 234 18 12 chrX 167482234 167482401 -9491739 - MER45A DNA AcHobo -10 168 1 210 333 103 0 chrX 167482471 167482558 -9491582 - L2 LINE L2 -10 3303 3208 476 287 79 32 chrX 167482634 167482850 -9491290 - MIR SINE MIR -17 245 20 33 73 0 0 chrX 167484395 167484463 -9489677 + GC_rich Low_complexity Low_complexity 1 68 0 530 129 0 0 chrX 167484824 167484909 -9489231 - L1MA4A LINE L1 -5 6298 6214 1162 296 174 9 chrX 167484937 167485465 -9488675 - L2 LINE L2 -1633 1681 1067 279 288 119 8 chrX 167485466 167485584 -9488556 - L2 LINE L2 -2456 858 728 228 180 20 20 chrX 167485612 167485662 -9488478 + CT-rich Low_complexity Low_complexity 2 51 0 22 35 0 0 chrX 167485876 167485905 -9488235 + AT_rich Low_complexity Low_complexity 1 29 0 320 379 64 30 chrX 167486787 167486990 -9487150 + L1MEd LINE L1 360 569 -5550 364 228 34 40 chrX 167487050 167487199 -9486941 + L1M4 LINE L1 5365 5512 -652 312 48 0 0 chrX 167487325 167487367 -9486773 + (CA)n Simple_repeat Simple_repeat 2 43 0 1279 297 185 25 chrX 167488292 167489125 -9485015 - L2 LINE L2 0 3313 2338 565 219 235 0 chrX 167489172 167489368 -9484772 + MIR SINE MIR 19 260 -2 264 308 92 15 chrX 167489919 167490049 -9484091 + MIR SINE MIR 1 140 -122 1781 169 0 10 chrX 167490400 167490702 -9483438 + AluJb SINE Alu 1 299 -13 26 0 0 0 chrX 167490790 167490816 -9483324 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chrX 167491197 167491220 -9482920 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chrX 167491359 167491396 -9482744 + AT_rich Low_complexity Low_complexity 1 37 0 9516 36 0 1 chrX 167491907 167493846 -9480294 - L1PA4 LINE L1 0 6155 4253 1143 241 80 37 chrX 167493934 167494118 -9480022 - MLT1A1 LTR MaLR -27 338 133 2197 102 0 3 chrX 167494118 167494413 -9479727 - AluSx SINE Alu -18 294 1 1143 241 80 37 chrX 167494413 167494552 -9479588 - MLT1A1 LTR MaLR -232 133 1 245 231 0 15 chrX 167494660 167494725 -9479415 + L1M4 LINE L1 5491 5554 -620 184 304 251 29 chrX 167495856 167496027 -9478113 + MIR SINE MIR 6 214 -48 * 880 280 224 4 chrX 167495995 167496504 -9477636 - L2 LINE L2 -228 3085 2469 280 307 132 18 chrX 167497959 167498073 -9476067 + MIR SINE MIR 117 243 -19 201 305 0 0 chrX 167498039 167498098 -9476042 + L2 LINE L2 3214 3272 0 * 2921 278 139 23 chrX 167498610 167499986 -9474154 - L2 LINE L2 0 3313 1745 618 215 12 6 chrX 167502037 167502209 -9471931 + CT-rich Low_complexity Low_complexity 4 176 0 1736 152 30 13 chrX 167502228 167502531 -9471609 - AluSx SINE Alu -4 308 1 285 75 0 0 chrX 167508527 167508567 -9465573 + (TG)n Simple_repeat Simple_repeat 1 40 0 354 45 0 0 chrX 167509078 167509122 -9465018 + (TG)n Simple_repeat Simple_repeat 1 44 0 530 309 58 33 chrX 167512228 167512471 -9461669 - MIR SINE MIR -1 261 13 276 321 46 9 chrX 167512547 167512656 -9461484 + L2 LINE L2 3137 3249 -23 2029 162 37 5 chrX 167512707 167513083 -9461057 - MLT1B LTR MaLR 0 390 3 506 300 101 96 chrX 167513668 167515177 -9458963 - L2 LINE L2 -55 3217 1696 384 246 82 41 chrX 167515185 167515307 -9458833 - L2 LINE L2 -2 3311 3185 253 148 49 82 chrX 167515476 167515537 -9458603 + MIR SINE MIR 111 169 -93 214 288 200 12 chrX 167516752 167516832 -9457308 + L2 LINE L2 3169 3263 -50 242 263 68 68 chrX 167517480 167517598 -9456542 - MIR3 SINE MIR -79 129 12 255 269 13 13 chrX 167517719 167517797 -9456343 + (CAGG)n Simple_repeat Simple_repeat 2 79 0 816 312 43 46 chrX 167518014 167518597 -9455543 + L1MC4a LINE L1 5314 5461 -872 620 195 86 35 chrX 167519461 167519635 -9454505 - MER53 DNA DNA -1 188 6 601 75 11 11 chrX 167519902 167519995 -9454145 + (TTCC)n Simple_repeat Simple_repeat 1 93 0 2127 174 5 32 chrX 167520142 167520182 -9453958 - MLT2C1 LTR ERVL 0 397 357 531 45 0 0 chrX 167520182 167520248 -9453892 + (TATG)n Simple_repeat Simple_repeat 2 67 0 2127 174 5 32 chrX 167520248 167520615 -9453525 - MLT2C1 LTR ERVL -40 357 1 441 321 42 35 chrX 167521613 167522011 -9452129 + L2 LINE L2 2633 3036 -277 200 111 28 0 chrX 167522865 167522901 -9451239 + (TG)n Simple_repeat Simple_repeat 2 38 0 2168 126 7 0 chrX 167522968 167523261 -9450879 + AluSx SINE Alu 6 300 -12 354 23 0 0 chrX 167523270 167523313 -9450827 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 303 302 8 24 chrX 167523313 167523439 -9450701 + L1M4 LINE L1 3073 3196 -2950 22 56 0 0 chrX 167524296 167524332 -9449808 + AT_rich Low_complexity Low_complexity 1 36 0 222 156 0 22 chrX 167524347 167524392 -9449748 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 316 304 0 44 chrX 167525003 167525138 -9449002 - HAL1 LINE L1 -1640 867 739 844 279 12 28 chrX 167525622 167525873 -9448267 + MIR SINE MIR 1 247 -15 227 279 0 15 chrX 167525910 167525978 -9448162 - MIR SINE MIR -194 68 2 229 247 0 72 chrX 167526010 167526107 -9448033 - L2 LINE L2 -1052 2262 2173 189 107 0 0 chrX 167526845 167526873 -9447267 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 193 258 61 15 chrX 167528662 167528728 -9445412 - MIR SINE MIR -62 146 78 190 184 46 11 chrX 167529224 167529311 -9444829 + GA-rich Low_complexity Low_complexity 1 90 0 190 208 293 0 chrX 167529350 167529456 -9444684 + MIR3 SINE MIR 15 151 -57 284 342 25 0 chrX 167533761 167533881 -9440259 - L2 LINE L2 0 3313 3191 245 323 140 34 chrX 167533900 167534336 -9439804 - L2 LINE L2 -572 2742 2261 379 273 0 0 chrX 167535034 167535122 -9439018 + MIR SINE MIR 131 218 -44 22 0 0 0 chrX 167535562 167535584 -9438556 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 167535965 167535986 -9438154 + AT_rich Low_complexity Low_complexity 1 21 0 905 180 20 0 chrX 167536191 167536391 -9437749 - L1MA4 LINE L1 -4 6296 6093 286 235 61 17 chrX 167536396 167536511 -9437629 - L1M4 LINE L1 -1942 4204 4085 1840 124 0 0 chrX 167536537 167536779 -9437361 - AluSq SINE Alu -67 246 5 241 82 41 0 chrX 167536843 167536892 -9437248 + (TA)n Simple_repeat Simple_repeat 2 52 0 476 43 57 0 chrX 167536941 167537011 -9437129 + L1PA4 LINE L1 6081 6154 -1 230 333 24 8 chrX 167537425 167537551 -9436589 - L2 LINE L2 -1 3271 3144 305 330 11 58 chrX 167537886 167538077 -9436063 - L1MCa LINE L1 -4873 1342 1161 3843 260 52 6 chrX 167538137 167539215 -9434925 - L1MCa LINE L1 -5239 1157 30 275 146 0 0 chrX 167539323 167539371 -9434769 - L2 LINE L2 -4 3309 3262 * 1830 243 101 16 chrX 167539360 167539997 -9434143 - L2 LINE L2 -703 2611 1921 234 333 0 0 chrX 167540073 167540139 -9434001 + L2 LINE L2 3207 3272 0 332 373 32 20 chrX 167540892 167541139 -9433001 + L2 LINE L2 1700 1949 -1365 300 287 60 44 chrX 167541465 167541716 -9432424 - L2 LINE L2 -686 2628 2374 250 297 36 9 chrX 167542740 167542851 -9431289 + L2 LINE L2 2622 2735 -579 230 254 66 41 chrX 167544367 167544489 -9429651 + L2 LINE L2 2926 3050 -222 196 322 24 61 chrX 167546314 167546590 -9427550 + L2 LINE L2 2719 3054 -218 575 302 130 30 chrX 167546623 167546961 -9427179 - L2 LINE L2 -2 3270 2899 390 250 86 31 chrX 167547343 167547471 -9426669 - L2 LINE L2 -1 3271 3137 831 112 0 0 chrX 167548085 167548210 -9425930 + (TA)n Simple_repeat Simple_repeat 2 126 0 1231 191 7 1 chrX 167550539 167550844 -9423296 + MER2 DNA MER2_type 3 344 -1 252 310 79 92 chrX 167550869 167551185 -9422955 + L2 LINE L2 2949 3260 -12 210 71 0 0 chrX 167551207 167551235 -9422905 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 4617 163 46 11 chrX 167551479 167552517 -9421623 - L1MB2 LINE L1 -9 6162 5099 25 0 0 0 chrX 167553279 167553304 -9420836 + AT_rich Low_complexity Low_complexity 1 25 0 402 85 0 0 chrX 167554471 167554530 -9419610 + (TG)n Simple_repeat Simple_repeat 1 59 0 27 0 0 0 chrX 167555533 167555560 -9418580 + AT_rich Low_complexity Low_complexity 1 27 0 1027 311 131 26 chrX 167555601 167556500 -9417640 + L2 LINE L2 2280 3274 -39 217 170 43 0 chrX 167559711 167559758 -9414382 + L2 LINE L2 3262 3310 -3 371 226 10 0 chrX 167560771 167560873 -9413267 + GA-rich Low_complexity Low_complexity 3 105 0 398 358 8 19 chrX 167561217 167561469 -9412671 + CT-rich Low_complexity Low_complexity 1 249 0 235 259 188 0 chrX 167562440 167562525 -9411615 + MIR3 SINE MIR 86 186 -22 373 301 98 17 chrX 167562553 167562726 -9411414 - MIR SINE MIR -44 218 32 363 309 0 0 chrX 167563219 167563313 -9410827 + L2 LINE L2 3177 3270 -2 214 305 51 25 chrX 167563343 167563461 -9410679 - L2 LINE L2 -27 3245 3125 2934 3 0 3 chrX 167563775 167564087 -9410053 + AluYa5 SINE Alu 1 311 0 194 274 81 16 chrX 167564666 167564728 -9409412 - MIR SINE MIR -37 225 160 180 167 24 0 chrX 167564762 167564804 -9409336 - MIR SINE MIR -136 72 30 279 139 0 0 chrX 167564906 167564949 -9409191 - L1MB5 LINE L1 -131 6043 6001 619 305 106 29 chrX 167565307 167566138 -9408002 - L1ME2 LINE L1 -301 5863 4939 372 286 68 17 chrX 167566533 167566711 -9407429 - MIR3 SINE MIR -66 142 1 224 281 178 22 chrX 167567280 167567415 -9406725 + L3 LINE CR1 1355 1510 -67 2558 60 0 0 chrX 167567519 167567818 -9406322 + AluY SINE Alu 1 299 -12 296 181 121 12 chrX 167567879 167567962 -9406178 - MER5C DNA MER1_type 0 324 233 489 252 8 0 chrX 167567988 167568107 -9406033 - MER5C DNA MER1_type -200 124 5 709 153 7 14 chrX 167568387 167568531 -9405609 + CT-rich Low_complexity Low_complexity 2 144 0 1400 44 0 6 chrX 167568541 167568722 -9405418 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2215 105 7 0 chrX 167568561 167569022 -9405118 - AluSx SINE Alu 0 463 1 329 257 15 81 chrX 167569419 167569555 -9404585 - L2 LINE L2 -3 3269 3143 307 229 240 10 chrX 167569606 167569702 -9404438 + L2 LINE L2 3150 3267 -5 1731 183 6 47 chrX 167569739 167570100 -9404040 + MLT2C1 LTR ERVL 5 350 -47 267 216 14 14 chrX 167570100 167570174 -9403966 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 366 315 49 0 chrX 167570290 167570433 -9403707 + L2 LINE L2 3123 3272 0 216 312 127 25 chrX 167570473 167570630 -9403510 + L2 LINE L2 2173 2345 -969 562 278 29 70 chrX 167570645 167570802 -9403338 + MIR SINE MIR 12 157 -105 342 0 0 0 chrX 167570802 167570840 -9403300 + (CAG)n Simple_repeat Simple_repeat 1 38 0 562 278 29 70 chrX 167570840 167570923 -9403217 + MIR SINE MIR 157 242 -20 976 301 116 27 chrX 167571039 167571800 -9402340 + L2 LINE L2 2476 3313 0 1494 171 0 67 chrX 167572142 167572457 -9401683 - AluJo SINE Alu -8 304 11 342 0 0 0 chrX 167572836 167572874 -9401266 + (TG)n Simple_repeat Simple_repeat 2 39 0 326 250 0 0 chrX 167572875 167573030 -9401110 + GA-rich Low_complexity Low_complexity 1 155 0 192 328 92 25 chrX 167573771 167573890 -9400250 + MIR3 SINE MIR 67 193 -15 1038 325 151 40 chrX 167573936 167574047 -9400093 + L3 LINE CR1 457 554 -1023 9299 143 32 3 chrX 167574047 167576397 -9397743 + L1PA11 LINE L1 3771 6171 -3 1038 325 151 40 chrX 167576397 167577089 -9397051 + L3 LINE CR1 554 1349 -228 186 43 0 0 chrX 167577312 167577335 -9396805 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 576 306 21 5 chrX 167580730 167580916 -9393224 - MIR3 SINE MIR -5 203 15 249 233 58 42 chrX 167581010 167581130 -9393010 + HAL1b LINE L1 1215 1336 -12 2229 124 44 6 chrX 167583413 167583775 -9390365 + MLT1B LTR MaLR 11 386 -4 331 302 71 50 chrX 167583966 167584148 -9389992 + MIR SINE MIR 21 152 -56 901 168 61 71 chrX 167584199 167584525 -9389615 - MLT1A2 LTR MaLR -3 380 5 282 256 125 62 chrX 167585252 167585412 -9388728 - MIR3 SINE MIR -27 181 12 265 277 58 58 chrX 167585760 167585915 -9388225 + MIR3 SINE MIR 1 155 -53 2145 85 0 16 chrX 167586309 167586625 -9387515 - AluY SINE Alu 0 311 1 857 295 155 32 chrX 167586772 167587378 -9386762 + L2 LINE L2 2629 3313 0 394 374 39 15 chrX 167587449 167587655 -9386485 + L2 LINE L2 3062 3272 0 182 267 293 0 chrX 167587706 167587781 -9386359 - MIR SINE MIR -67 141 45 440 280 52 52 chrX 167588176 167588387 -9385753 + MIR SINE MIR 12 222 -40 613 274 113 27 chrX 167589172 167589464 -9384676 + L2 LINE L2 2176 2492 -822 440 324 82 25 chrX 167589480 167589765 -9384375 + L2 LINE L2 2755 3055 -258 5019 173 52 21 chrX 167589819 167590895 -9383245 - L1MC3 LINE L1 -8 7777 6651 217 311 76 45 chrX 167590895 167591027 -9383113 + L2 LINE L2 3163 3298 -15 383 328 117 36 chrX 167591039 167591347 -9382793 + L2 LINE L2 2407 2739 -575 2837 209 26 62 chrX 167591358 167592817 -9381323 + L1ME2 LINE L1 4501 5904 -260 392 274 156 19 chrX 167592986 167593198 -9380942 - L1M4 LINE L1 -1262 4884 4644 334 324 98 44 chrX 167593381 167593606 -9380534 - L1M4 LINE L1 -1453 4693 4457 318 77 0 0 chrX 167593855 167593894 -9380246 + MER3 DNA MER1_type 36 74 -135 347 343 30 47 chrX 167597710 167598034 -9376106 + L2 LINE L2 2772 3092 -180 310 265 149 17 chrX 167598395 167598576 -9375564 - MIR SINE MIR -46 216 12 752 307 17 25 chrX 167598608 167598849 -9375291 - MIR SINE MIR -10 252 14 390 314 96 17 chrX 167599317 167599556 -9374584 + MIR SINE MIR 1 258 -4 600 332 111 26 chrX 167600156 167600759 -9373381 + L2 LINE L2 2078 2731 -583 473 263 116 39 chrX 167600770 167601029 -9373111 + HAL1b LINE L1 1070 1348 0 197 324 59 50 chrX 167601060 167601282 -9372858 + L2 LINE L2 2738 2961 -353 264 340 87 52 chrX 167602388 167602756 -9371384 + L2 LINE L2 2888 3268 -4 493 359 37 16 chrX 167602817 167603352 -9370788 + L2 LINE L2 2479 3047 -225 274 276 8 104 chrX 167603722 167603856 -9370284 - L2 LINE L2 -10 3303 3183 203 208 42 0 chrX 167603910 167603958 -9370182 + GA-rich Low_complexity Low_complexity 2 51 0 731 235 81 95 chrX 167605654 167606011 -9368129 - L2 LINE L2 -5 3267 2916 3612 150 314 45 chrX 167606011 167607000 -9367140 - MER52C LTR ERV1 -11 1267 12 421 281 169 6 chrX 167607032 167607210 -9366930 - L2 LINE L2 -481 2833 2627 1412 184 53 162 chrX 167607210 167607853 -9366287 + LTR41 LTR ERVL 7 579 -194 1340 228 42 69 chrX 167607911 167608561 -9365579 - L1MC5 LINE L1 -54 7907 7276 451 249 65 50 chrX 167608700 167609003 -9365137 - L1MC5 LINE L1 -735 7226 6933 4285 114 18 61 chrX 167609115 167609886 -9364254 - L1MA7 LINE L1 -9 6282 5545 331 190 66 117 chrX 167609894 167610031 -9364109 + LTR41 LTR ERVL 584 713 -60 347 245 38 9 chrX 167610034 167610140 -9364000 - L1MB8 LINE L1 -6 6172 6064 229 120 0 100 chrX 167610158 167610208 -9363932 - MSTB1 LTR MaLR -275 157 113 256 138 259 0 chrX 167610209 167610267 -9363873 - L1MB8 LINE L1 -227 5957 5885 517 189 38 8 chrX 167610267 167610399 -9363741 - L1MB2 LINE L1 -1 6170 6035 354 147 13 53 chrX 167610400 167610475 -9363665 + LTR41 LTR ERVL 696 767 -6 450 246 164 10 chrX 167610487 167610682 -9363458 - L2 LINE L2 -695 2619 2395 201 105 158 0 chrX 167610700 167610738 -9363402 + L3 LINE CR1 654 697 -880 572 278 11 17 chrX 167610785 167610961 -9363179 + MER5B DNA MER1_type 1 175 -3 329 327 58 54 chrX 167611144 167611200 -9362940 - MIR SINE MIR -18 244 190 1687 195 50 16 chrX 167611200 167611241 -9362899 - MLT2C1 LTR ERVL 0 397 359 459 0 0 0 chrX 167611241 167611292 -9362848 + (TG)n Simple_repeat Simple_repeat 2 52 0 1687 195 50 16 chrX 167611292 167611634 -9362506 - MLT2C1 LTR ERVL -38 359 1 329 327 58 54 chrX 167611634 167611782 -9362358 - MIR SINE MIR -72 190 39 257 347 89 16 chrX 167612761 167612885 -9361255 - L2 LINE L2 -1 3271 3139 1055 221 0 14 chrX 167613011 167613219 -9360921 + MER63A DNA MER1_type 1 205 -5 198 329 73 0 chrX 167613388 167613470 -9360670 - L2 LINE L2 -557 2757 2670 600 264 89 32 chrX 167614092 167614406 -9359734 - L1ME4a LINE L1 -81 6040 5709 3333 155 19 5 chrX 167815437 167815745 -9158395 - L1P4 LINE L1 -365 5800 5498 462 15 45 0 chrX 167815745 167815812 -9158328 + (TTTA)n Simple_repeat Simple_repeat 2 71 0 3333 155 19 5 chrX 167815812 167816437 -9157703 - L1P4 LINE L1 -667 5498 4854 671 260 25 30 chrX 167816423 167816708 -9157432 - L1M1 LINE L1 -5010 2479 1897 * 1689 295 49 59 chrX 167816750 167817516 -9156624 - L1M1 LINE L1 -6437 1052 267 2287 75 0 0 chrX 167817516 167817835 -9156305 - AluY SINE Alu 0 319 1 1689 295 49 59 chrX 167817835 167818088 -9156052 - L1M1 LINE L1 -7222 267 13 2009 147 0 0 chrX 167818400 167818693 -9155447 - AluSx SINE Alu -17 295 3 385 215 0 0 chrX 167818708 167818773 -9155367 - L2 LINE L2 -5 3308 3244 249 197 0 0 chrX 167819745 167819806 -9154334 + (TCCA)n Simple_repeat Simple_repeat 4 64 0 5721 143 16 6 chrX 167820603 167821215 -9152925 - L1MA8 LINE L1 -2 6289 5662 2211 176 76 2 chrX 167821215 167821612 -9152528 + MSTB LTR MaLR 1 426 0 5721 143 16 6 chrX 167821612 167821990 -9152150 - L1MA8 LINE L1 -629 5662 5289 253 192 0 0 chrX 167821999 167822051 -9152089 - MLT2A1 LTR ERVL 0 444 393 335 259 47 0 chrX 167822053 167822138 -9152002 + L1MC4 LINE L1 6614 6702 -1340 279 79 0 0 chrX 167822143 167822181 -9151959 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 3218 62 2 2 chrX 167822183 167822583 -9151557 - MLT2A1 LTR ERVL -44 400 1 1360 181 14 11 chrX 167822583 167822864 -9151276 - L1MA8 LINE L1 -867 5279 4998 1011 189 45 20 chrX 167822865 167823066 -9151074 + AluJo SINE Alu 83 288 -24 27 0 0 0 chrX 167823066 167823093 -9151047 + AT_rich Low_complexity Low_complexity 1 27 0 4949 174 16 55 chrX 167823094 167824258 -9149882 - L1MA8 LINE L1 -1137 5009 3892 38 0 0 0 chrX 167824362 167824400 -9149740 + AT_rich Low_complexity Low_complexity 1 38 0 269 0 0 0 chrX 167824400 167824437 -9149703 - L1PA4 LINE L1 -4 6151 6115 24 53 0 0 chrX 167825223 167825261 -9148879 + AT_rich Low_complexity Low_complexity 1 38 0 16102 210 15 19 chrX 167825980 167831200 -9142940 + L1PA15 LINE L1 1668 6859 -9 236 307 11 23 chrX 167831966 167832054 -9142086 - MIR3 SINE MIR -13 195 109 297 317 139 19 chrX 167832065 167832273 -9141867 + LTR16C LTR ERVL 258 490 -1 2505 66 3 0 chrX 167832392 167832696 -9141444 - AluSp SINE Alu -8 305 1 343 258 21 0 chrX 167833014 167833111 -9141029 - MLT1L LTR MaLR -7 608 510 722 341 36 9 chrX 167833288 167833707 -9140433 - L1MC4a LINE L1 -1932 5876 5447 9641 132 51 1 chrX 167833709 167836122 -9138018 - L1PA11 LINE L1 0 6174 3671 4273 236 44 27 chrX 167836133 167837095 -9137045 + L1PA11 LINE L1 2712 3703 -2443 387 98 0 0 chrX 167837095 167837156 -9136984 + (CA)n Simple_repeat Simple_repeat 2 62 0 4273 236 44 27 chrX 167837156 167837506 -9136634 + L1P LINE L1 3703 4046 -2100 290 130 0 0 chrX 167837528 167837574 -9136566 + AluJ/FLAM SINE Alu 54 99 -203 2189 95 7 3 chrX 167837767 167838269 -9135871 + L1P4 LINE L1 5071 5574 -600 488 275 23 59 chrX 167838421 167838615 -9135525 - MER5B DNA MER1_type 0 178 2 1061 163 21 38 chrX 167839303 167839542 -9134598 + MER106A DNA MER1_type 1 235 -1 1016 211 88 140 chrX 167840722 167841201 -9132939 + LTR33 LTR ERVL 56 509 -12 239 288 123 18 chrX 167844326 167844496 -9129644 + L2 LINE L2 2301 2488 -826 772 280 101 29 chrX 167844505 167844919 -9129221 + MLT1J1 LTR MaLR 1 444 -2 315 338 52 65 chrX 167844961 167845343 -9128797 + L2 LINE L2 2554 2930 -384 243 234 31 0 chrX 167846020 167846084 -9128056 - MIR SINE MIR -3 259 194 611 267 6 0 chrX 167846150 167846311 -9127829 + L1MEd LINE L1 20 181 -5938 2823 126 104 6 chrX 167846311 167846811 -9127329 - MER44D DNA MER2_type -1 604 1 807 253 64 0 chrX 167846867 167847069 -9127071 + LTR16C LTR ERVL 277 491 0 479 310 61 5 chrX 167847069 167847278 -9126862 + Charlie7 DNA MER1_type 263 483 -2129 380 266 138 61 chrX 167847412 167847650 -9126490 + HAL1 LINE L1 858 1076 -1431 2442 57 0 0 chrX 167847650 167847933 -9126207 + AluY SINE Alu 13 295 -16 192 77 0 0 chrX 167847935 167847961 -9126179 + (TA)n Simple_repeat Simple_repeat 1 26 0 380 266 138 61 chrX 167847961 167848297 -9125843 + HAL1 LINE L1 1076 1480 -1027 * 735 194 7 2 chrX 167848290 167848445 -9125695 + L1M3 LINE L1 5373 5526 -630 1638 194 3 0 chrX 167848447 167848736 -9125404 - L1M3 LINE L1 -378 5793 5504 615 202 42 18 chrX 167848752 167848920 -9125220 - L1M3 LINE L1 -835 5311 5140 353 333 36 7 chrX 167850090 167850228 -9123912 - MIR SINE MIR 0 262 121 457 351 55 15 chrX 167850289 167850491 -9123649 + MIR SINE MIR 32 241 -21 319 129 214 0 chrX 167850568 167850638 -9123502 - L1MB8 LINE L1 -1 6177 6093 2588 185 8 42 chrX 167850679 167850965 -9123175 - L1MB4 LINE L1 -22 6146 5852 1398 163 4 0 chrX 167850965 167851222 -9122918 + L1MA4 LINE L1 6034 6291 -9 2588 185 8 42 chrX 167851222 167851690 -9122450 - L1MB4 LINE L1 -316 5852 5450 529 212 80 124 chrX 167852703 167852929 -9121211 + MIR SINE MIR 32 247 -15 309 335 123 0 chrX 167853176 167853331 -9120809 + L3 LINE CR1 1389 1562 -15 494 347 20 0 chrX 167854085 167854284 -9119856 + MIR SINE MIR 5 207 -55 681 239 72 11 chrX 167854322 167854502 -9119638 + MIR SINE MIR 72 262 0 264 320 41 0 chrX 167856069 167856191 -9117949 - L1ME4a LINE L1 -24 6097 5971 417 265 193 62 chrX 167856213 167856519 -9117621 - L1ME4a LINE L1 -239 5882 5537 764 227 11 6 chrX 167857063 167857239 -9116901 + MER69A DNA AcHobo 1 177 0 2180 195 36 11 chrX 167857777 167858253 -9115887 - Charlie4a DNA MER1_type 0 508 21 2469 136 13 3 chrX 167858319 167858702 -9115438 + MLT1B LTR MaLR 1 387 -3 602 304 12 51 chrX 167858775 167859028 -9115112 + MIR SINE MIR 13 255 -7 308 281 0 156 chrX 167859256 167859391 -9114749 - L2 LINE L2 -1 3271 3158 3595 218 18 16 chrX 167959447 167960527 -9013613 - L1 LINE L1 -3025 4540 3460 439 151 12 0 chrX 167960535 167960621 -9013519 - L1 LINE L1 -5288 2277 2191 680 337 6 6 chrX 167960640 167960809 -9013331 - L1PA10 LINE L1 -9 6159 5991 214 359 0 0 chrX 167960811 167960875 -9013265 + C-rich Low_complexity Low_complexity 2 65 0 208 203 47 0 chrX 167960879 167960943 -9013197 + CT-rich Low_complexity Low_complexity 3 69 0 262 320 0 13 chrX 167961953 167962031 -9012109 + MIR3 SINE MIR 83 159 -49 1128 264 57 39 chrX 167962235 167962464 -9011676 - L2 LINE L2 0 3313 3090 285 29 0 0 chrX 167962464 167962498 -9011642 + (TG)n Simple_repeat Simple_repeat 1 34 0 1128 264 57 39 chrX 167962498 167962708 -9011432 - L2 LINE L2 -223 3090 2866 4838 191 27 11 chrX 167962814 167964098 -9010042 + L1M1 LINE L1 3419 4717 -2848 389 219 62 0 chrX 167964103 167964199 -9009941 - L1 LINE L1 -2808 3338 3237 1692 146 66 30 chrX 167964299 167964634 -9009506 - THE1C LTR MaLR -26 349 3 24 0 0 0 chrX 167964887 167964911 -9009229 + AT_rich Low_complexity Low_complexity 1 24 0 276 319 22 0 chrX 167964913 167965004 -9009136 - MIR3 SINE MIR -49 159 67 399 187 0 0 chrX 167965142 167965217 -9008923 - MER116 DNA Mariner -5 75 1 2053 101 7 17 chrX 167965302 167965611 -9008529 - AluSp SINE Alu 0 306 1 435 295 9 9 chrX 167966612 167966724 -9007416 + MIR SINE MIR 35 146 -62 9846 132 27 4 chrX 167967477 167968235 -9005905 - L1PA10 LINE L1 -130 7457 6718 369 0 0 0 chrX 167968235 167968276 -9005864 + (TC)n Simple_repeat Simple_repeat 2 42 0 9846 132 27 4 chrX 167968276 167969369 -9004771 - L1PA10 LINE L1 -869 6718 644 10709 133 58 28 chrX 167969523 167971453 -9002687 - L1M1 LINE L1 -4161 3404 1415 7983 127 70 5 chrX 167971558 167973028 -9001112 + L1MA3 LINE L1 2184 3744 -3821 4159 109 73 11 chrX 167973007 167973716 -9000424 + L1MA3 LINE L1 6965 7717 -7 * 9007 185 5 9 chrX 167973881 167973983 -9000157 - L1P LINE L1 -1827 4319 4218 1967 150 0 3 chrX 167973983 167974289 -8999851 + AluSx SINE Alu 1 305 -7 9007 185 5 9 chrX 167974289 167975909 -8998231 - L1P LINE L1 -1928 4218 2605 2457 131 18 0 chrX 167975910 167976299 -8997841 + L1PA13 LINE L1 5760 6155 -8 299 185 0 0 chrX 167976449 167976514 -8997626 + MER63 DNA MER1_type 950 1014 -48 1902 103 29 42 chrX 167976592 167976903 -8997237 + AluSq SINE Alu 1 307 -6 4559 142 6 4 chrX 167977052 167977762 -8996378 + MER50 LTR ERV1 1 711 -23 206 245 20 0 chrX 167978435 167978484 -8995656 + MIR SINE MIR 213 262 0 904 99 33 0 chrX 167979125 167979246 -8994894 - AluJb SINE Alu -187 125 1 376 302 0 0 chrX 167979427 167979523 -8994617 - MIR3 SINE MIR -21 187 92 5806 60 34 3 chrX 167979741 167980497 -8993643 + LTR17 LTR ERV1 1 780 0 965 197 0 43 chrX 167980603 167980811 -8993329 - MER3 DNA MER1_type -6 203 5 1155 153 34 0 chrX 167981682 167981859 -8992281 - Tigger3(Golem) DNA MER2_type -1 3028 2846 812 168 110 7 chrX 167981856 167982011 -8992129 - Tigger3(Golem) DNA MER2_type -2856 173 3 * 2663 148 98 27 chrX 167982502 167983015 -8991125 - MER44D DNA MER2_type -1 604 1 1177 215 78 73 chrX 167984172 167984710 -8989430 + MER39 LTR ERV1 6 707 0 217 370 31 24 chrX 167984832 167984959 -8989181 + L3 LINE CR1 1448 1575 -2 1622 164 38 57 chrX 167985685 167986170 -8987970 - MSTD LTR MaLR 0 428 1 263 310 46 11 chrX 167986208 167986295 -8987845 - MIR SINE MIR -153 109 20 12036 23 0 1 chrX 167986658 167988092 -8986048 - L1P LINE L1 -1918 4228 2796 8244 159 18 15 chrX 167988088 167990075 -8984065 + L1MA2 LINE L1 3799 5783 -522 * 857 126 17 31 chrX 167990076 167990259 -8983881 + L1MA2 LINE L1 5955 6127 -170 252 212 50 61 chrX 167990562 167990661 -8983479 + L1MC/D LINE L1 5702 5799 -2009 23 68 0 0 chrX 167992016 167992060 -8982080 + AT_rich Low_complexity Low_complexity 1 44 0 262 335 71 14 chrX 167993441 167993653 -8980487 + L1MEd LINE L1 412 635 -5895 2692 273 126 17 chrX 167994324 167995407 -8978733 - L1MD2 LINE L1 -10 6349 5132 266 351 49 17 chrX 167995477 167995669 -8978471 + MER20B DNA MER1_type 2 201 -18 31 0 0 0 chrX 167995831 167995862 -8978278 + AT_rich Low_complexity Low_complexity 1 31 0 2789 165 30 30 chrX 167996168 167996733 -8977407 + MER34B LTR ERV1 1 565 0 471 282 57 13 chrX 167996735 167996995 -8977145 + L1MEd LINE L1 2478 2746 -3794 977 229 47 0 chrX 167997005 167997219 -8976921 + MER58A DNA MER1_type 1 224 0 974 283 18 36 chrX 167997911 167998240 -8975900 + Charlie2 DNA MER1_type 1 323 -2459 1466 244 66 9 chrX 167998249 167998691 -8975449 + Charlie2 DNA MER1_type 1861 2327 -535 317 175 63 0 chrX 167999335 167999398 -8974742 + Charlie5 DNA MER1_type 1 67 -2545 525 143 42 0 chrX 167999401 167999520 -8974620 + Charlie5 DNA MER1_type 2471 2594 -18 255 125 0 0 chrX 168000618 168000658 -8973482 - L3b LINE CR1 -185 1398 1359 26 30 0 0 chrX 168000704 168000737 -8973403 + AT_rich Low_complexity Low_complexity 1 33 0 510 261 116 56 chrX 168001199 168001483 -8972657 + MLT1L LTR MaLR 94 394 -221 552 259 88 0 chrX 168001687 168001834 -8972306 + MLT1L LTR MaLR 448 607 -8 198 118 0 0 chrX 168002050 168002084 -8972056 + (TC)n Simple_repeat Simple_repeat 1 34 0 237 350 60 92 chrX 168002576 168002739 -8971401 - L2 LINE L2 -4 3268 3116 769 156 0 15 chrX 168002739 168002874 -8971266 + FLAM_C SINE Alu 1 133 0 237 350 60 92 chrX 168002874 168002993 -8971147 - L2 LINE L2 -156 3116 2995 408 387 64 5 chrX 168003765 168003969 -8970171 + MIR SINE MIR 46 261 -1 486 341 64 75 chrX 168003988 168004361 -8969779 - L2 LINE L2 -202 3070 2681 2616 93 5 14 chrX 168004361 168004728 -8969412 - THE1B LTR MaLR 0 364 1 486 341 64 75 chrX 168004728 168005077 -8969063 - L2 LINE L2 -591 2681 2330 1723 195 36 13 chrX 168005140 168005530 -8968610 + LTR52 LTR ERVL 5 403 -18 277 254 14 0 chrX 168006535 168006606 -8967534 + MER117 DNA MER1_type 17 88 -109 450 319 12 43 chrX 168006982 168007145 -8966995 + MIR SINE MIR 16 173 -89 258 105 0 0 chrX 168007151 168007189 -8966951 + (TG)n Simple_repeat Simple_repeat 2 39 0 407 310 0 58 chrX 168007247 168007402 -8966738 - MIR SINE MIR -86 176 31 2217 130 21 16 chrX 168008136 168008513 -8965627 - L1MC1 LINE L1 0 6333 5955 1001 110 110 20 chrX 168008783 168008983 -8965157 - THE1C LTR MaLR -2 373 156 1051 94 0 0 chrX 168008984 168009111 -8965029 + AluSq/x SINE Alu 1 127 -186 27 0 0 0 chrX 168009696 168009723 -8964417 + AT_rich Low_complexity Low_complexity 1 27 0 1250 136 196 57 chrX 168009876 168010141 -8963999 + AluJo SINE Alu 1 302 0 3792 204 54 7 chrX 168011144 168011917 -8962223 - MER21B LTR ERV1 -53 810 1 334 354 139 5 chrX 168011953 168012162 -8961978 - MIR SINE MIR -14 248 12 27 49 0 0 chrX 168012818 168012859 -8961281 + AT_rich Low_complexity Low_complexity 1 41 0 472 251 76 15 chrX 168012930 168013164 -8960976 + MLT1J1 LTR MaLR 72 325 -125 229 267 116 23 chrX 168013199 168013285 -8960855 + L2 LINE L2 3207 3300 -13 258 355 28 21 chrX 168013341 168013482 -8960658 + L3 LINE CR1 1424 1565 -12 1085 189 60 52 chrX 168015123 168015472 -8958668 - L1MEc LINE L1 -3561 2654 2303 1158 190 0 5 chrX 168015797 168015997 -8958143 - AluJo SINE Alu -29 283 85 755 174 25 0 chrX 168016007 168016168 -8957972 - L1MEc LINE L1 -4050 2346 2182 554 269 159 0 chrX 168016316 168016461 -8957679 - MER5A DNA MER1_type 0 189 22 1347 12 0 19 chrX 168017538 168017700 -8956440 - L1PA2 LINE L1 0 6155 5997 656 25 0 0 chrX 168017700 168017781 -8956359 + L1HS LINE L1 5895 5975 -180 280 269 26 13 chrX 168017784 168017862 -8956278 + L2 LINE L2 3235 3313 0 2395 90 0 3 chrX 168018129 168018440 -8955700 + AluSq SINE Alu 1 310 -3 1293 299 47 2 chrX 168018541 168018966 -8955174 + LTR16A LTR ERVL 1 444 -6 208 370 76 16 chrX 168020273 168020457 -8953683 - MIR3 SINE MIR -9 199 5 * 221 229 35 0 chrX 168020421 168020479 -8953661 + MIR SINE MIR 100 158 -50 183 156 0 0 chrX 168020768 168020800 -8953340 + (ATG)n Simple_repeat Simple_repeat 2 33 0 884 182 0 0 chrX 168020959 168021140 -8953000 - MER53 DNA DNA 0 189 9 1464 194 126 3 chrX 168021161 168021486 -8952654 - MLT1A1 LTR MaLR 0 365 1 367 302 122 6 chrX 168021597 168021769 -8952371 - LTR16C LTR ERVL 0 491 300 705 241 22 102 chrX 168021869 168022386 -8951754 + MER34B LTR ERV1 1 445 -97 2476 273 50 32 chrX 168022819 168023604 -8950536 + L1PA13 LINE L1 4 802 -5985 14906 227 19 21 chrX 168023740 168028562 -8945578 + L1PA13 LINE L1 1245 6076 -740 5798 204 25 26 chrX 168028670 168029957 -8944183 - L1M1 LINE L1 -6265 1300 15 241 316 69 6 chrX 168030035 168030209 -8943931 - L1ME LINE L1 -349 5772 5588 1049 223 48 3 chrX 168030938 168031230 -8942910 + L1 LINE L1 4261 4565 -1581 1525 201 54 28 chrX 168031232 168031525 -8942615 - MLT1A1 LTR MaLR -2 363 79 2152 135 48 25 chrX 168031525 168031881 -8942259 - THE1B LTR MaLR 0 364 1 12000 87 6 0 chrX 168031881 168033451 -8940689 - THE1B-int LTR MaLR 0 1580 1 2181 126 48 25 chrX 168033451 168033807 -8940333 - THE1B LTR MaLR 0 364 1 1525 201 54 28 chrX 168033807 168033865 -8940275 - MLT1A1 LTR MaLR -285 80 1 3615 197 24 0 chrX 168033866 168034672 -8939468 + L1 LINE L1 4562 5386 -760 4532 154 25 18 chrX 168034676 168035560 -8938580 + L1MB1 LINE L1 5279 6168 0 1186 267 31 86 chrX 168035803 168036293 -8937847 - L2 LINE L2 0 3313 2851 319 98 0 0 chrX 168036862 168036913 -8937227 + L1MA4 LINE L1 6234 6284 -16 28 0 0 0 chrX 168036917 168036945 -8937195 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chrX 168037395 168037416 -8936724 + AT_rich Low_complexity Low_complexity 1 21 0 33 56 0 0 chrX 168037686 168037740 -8936400 + AT_rich Low_complexity Low_complexity 1 54 0 2216 121 57 10 chrX 168037744 168038132 -8936008 - L1MA1 LINE L1 -7 6295 5890 2703 150 19 0 chrX 168038444 168038864 -8935276 - MSTA LTR MaLR 0 428 1 256 338 13 0 chrX 168039219 168039296 -8934844 - LTR67 LTR ERVL -357 200 123 401 230 177 0 chrX 168040308 168040421 -8933719 + MIR SINE MIR 104 236 -26 26 0 0 0 chrX 168040433 168040459 -8933681 + AT_rich Low_complexity Low_complexity 1 26 0 480 295 154 0 chrX 168040551 168040700 -8933440 + MER5A DNA MER1_type 10 181 -8 658 280 89 25 chrX 168040712 168040948 -8933192 + MIR SINE MIR 8 258 -4 414 308 0 8 chrX 168041465 168041598 -8932542 + MIR SINE MIR 120 251 -11 6688 67 3 2 chrX 168041606 168043045 -8931095 + L1PA8A LINE L1 4694 6129 -2 189 74 0 0 chrX 168043068 168043095 -8931045 + (TTG)n Simple_repeat Simple_repeat 2 28 0 418 276 20 13 chrX 168043810 168043962 -8930178 - L1ME LINE L1 -452 5669 5517 305 332 60 35 chrX 168044187 168044419 -8929721 - L1ME LINE L1 -871 5275 5038 600 287 118 29 chrX 168045476 168045824 -8928316 + MLT1H LTR MaLR 119 497 -52 6987 59 3 1 chrX 168045846 168047585 -8926555 - L1PA7 LINE L1 -3 6151 4410 7490 106 1 14 chrX 168047585 168048764 -8925376 + L1PA7 LINE L1 3232 4395 -1751 6553 233 97 24 chrX 168048764 168050893 -8923247 - L1M2 LINE L1 -4909 2300 1 1620 149 86 31 chrX 168051323 168051673 -8922467 - THE1C LTR MaLR -4 371 3 4480 134 15 12 chrX 168051675 168052393 -8921747 - THE1C-int LTR MaLR 0 1580 861 337 128 0 0 chrX 168052391 168052438 -8921702 - THE1C-int LTR MaLR -938 642 596 * 232 128 0 26 chrX 168052487 168052526 -8921614 - MSTA LTR MaLR -363 65 28 369 113 0 0 chrX 168052528 168052581 -8921559 - THE1C-int LTR MaLR -1016 564 512 3313 263 23 25 chrX 168052682 168053026 -8921114 - L2 LINE L2 -490 2824 2481 772 269 14 28 chrX 168053026 168053238 -8920902 + MER63A DNA MER1_type 1 209 -1 3313 263 23 25 chrX 168053238 168053792 -8920348 - L2 LINE L2 -833 2481 1927 1534 252 91 40 chrX 168055576 168056072 -8918068 + MLT1G1 LTR MaLR 75 595 0 773 200 47 35 chrX 168056987 168057157 -8916983 + MER5A DNA MER1_type 11 182 -7 1682 216 83 7 chrX 168057639 168058047 -8916093 - L1ME1 LINE L1 -5 6161 5723 6608 141 23 19 chrX 168058061 168059003 -8915137 - L1MA2 LINE L1 0 6304 5367 1937 127 4 0 chrX 168059003 168059270 -8914870 - AluSx SINE Alu -44 268 1 6608 141 23 19 chrX 168059270 168060408 -8913732 - L1MA2 LINE L1 -937 5367 4204 1175 240 20 47 chrX 168061327 168061623 -8912517 - LTR16C LTR ERVL -4 487 200 234 0 0 0 chrX 168062665 168062691 -8911449 + (T)n Simple_repeat Simple_repeat 1 26 0 980 218 11 54 chrX 168063000 168063280 -8910860 + MER96B DNA MER1_type? 5 272 -145 391 294 121 4 chrX 168063656 168063928 -8910212 - L1ME4a LINE L1 0 6121 5818 2631 52 0 0 chrX 168064067 168064372 -8909768 - AluY SINE Alu -6 305 1 938 260 23 23 chrX 168064446 168064711 -8909429 + LTR16A1 LTR ERVL 147 411 -46 5030 139 34 16 chrX 168064816 168065696 -8908444 - L1MA8 LINE L1 -4 6287 5392 23 33 0 0 chrX 168065934 168065964 -8908176 + AT_rich Low_complexity Low_complexity 1 30 0 414 0 0 0 chrX 168066352 168066398 -8907742 + (CA)n Simple_repeat Simple_repeat 1 46 0 * 441 0 0 0 chrX 168066397 168066446 -8907694 + (GA)n Simple_repeat Simple_repeat 2 50 0 4412 275 115 24 chrX 168067181 168068061 -8906079 + L2 LINE L2 1106 1904 -1409 338 0 24 0 chrX 168068061 168068103 -8906037 + (TTG)n Simple_repeat Simple_repeat 2 44 0 4412 275 115 24 chrX 168068103 168069085 -8905055 + L2 LINE L2 1904 3155 -158 412 111 25 12 chrX 168069299 168069380 -8904760 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 1950 200 45 24 chrX 168069605 168070030 -8904110 - Tigger2a DNA MER2_type 0 434 1 19509 102 6 2 chrX 168070150 168073766 -8900374 - L1PA8 LINE L1 -1 6486 2819 2285 162 41 6 chrX 168074169 168074533 -8899607 + L1P3 LINE L1 10 386 -6075 938 173 0 28 chrX 168074532 168074746 -8899394 - L1PA8 LINE L1 -5055 1406 1199 * 263 247 39 26 chrX 168074987 168075064 -8899076 - MIR SINE MIR -120 142 65 294 313 36 10 chrX 168075343 168075535 -8898605 - L1M4 LINE L1 -1543 5624 5428 10789 186 7 9 chrX 168075580 168077739 -8896401 + L1PA13 LINE L1 3075 5229 -917 3665 135 25 0 chrX 168077771 168078363 -8895777 + L1PA13 LINE L1 5544 6150 -13 195 48 48 24 chrX 168078368 168078410 -8895730 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 431 321 19 44 chrX 168078423 168078694 -8895446 - L1M4 LINE L1 -1814 5353 5090 3485 170 16 8 chrX 168079338 168080004 -8894136 + L1MA8 LINE L1 4591 5262 -884 296 177 25 63 chrX 168079982 168080061 -8894079 + L1MD2 LINE L1 6235 6310 -49 * 2996 147 11 41 chrX 168080078 168080162 -8893978 + L1MA8 LINE L1 5254 5339 -952 2533 69 0 0 chrX 168080162 168080468 -8893672 + AluSc SINE Alu 1 306 -3 2996 147 11 41 chrX 168080468 168080948 -8893192 + L1MA8 LINE L1 5339 5801 -490 393 188 17 34 chrX 168080971 168081088 -8893052 + L1MA8 LINE L1 6068 6182 -109 645 229 36 14 chrX 168081312 168081535 -8892605 - L1M4 LINE L1 -2099 5068 4841 2552 167 16 26 chrX 168082175 168082683 -8891457 - L1MC/D LINE L1 -603 5756 5254 927 201 9 5 chrX 168082685 168082899 -8891241 - L1MC/D LINE L1 -1315 4831 4617 28 0 0 0 chrX 168082917 168082945 -8891195 + AT_rich Low_complexity Low_complexity 1 28 0 1182 230 11 69 chrX 168082948 168083383 -8890757 - L1MA9 LINE L1 -38 6274 5865 3045 193 27 5 chrX 168083483 168084492 -8889648 - L1MA9 LINE L1 -484 5828 4800 2184 238 32 8 chrX 168084483 168085203 -8888937 - L1M4 LINE L1 -2342 4825 4089 * 1419 225 99 26 chrX 168085201 168085927 -8888213 - L1M4 LINE L1 -3471 3696 2897 * 871 193 0 48 chrX 168085955 168086121 -8888019 - FRAM SINE Alu -17 159 2 4761 235 36 17 chrX 168086166 168088056 -8886084 - L1M4 LINE L1 -4161 3007 1212 * 5288 142 9 36 chrX 168088055 168088634 -8885506 + L1PA16 LINE L1 5162 5706 -460 2266 112 0 6 chrX 168088634 168088946 -8885194 + AluSx SINE Alu 3 312 0 5288 142 9 36 chrX 168088946 168089395 -8884745 + L1PA16 LINE L1 5706 6165 -1 3534 299 36 18 chrX 168089432 168090631 -8883509 - L1M4 LINE L1 -5944 1224 4 605 291 86 53 chrX 168090647 168091664 -8882476 - L1MDa LINE L1 -3018 3522 2472 255 205 134 39 chrX 168091726 168091853 -8882287 - L1MB1 LINE L1 0 6168 6030 5313 97 51 0 chrX 168091901 168092785 -8881355 + L1PB1 LINE L1 5187 6115 -36 275 246 43 0 chrX 168092925 168092994 -8881146 + LTR16A1 LTR ERVL 370 441 -16 1027 191 28 83 chrX 168093006 168093340 -8880800 - MER33 DNA MER1_type -13 311 1 302 340 21 0 chrX 168093359 168093456 -8880684 - L1MB1 LINE L1 -2028 5780 5682 396 0 0 0 chrX 168094462 168094506 -8879634 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 65 0 0 chrX 168094652 168094683 -8879457 + (TG)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chrX 168095206 168095232 -8878908 + AT_rich Low_complexity Low_complexity 1 26 0 1290 290 61 48 chrX 168095578 168096021 -8878119 - MLT1G LTR MaLR -163 427 1 1489 327 38 41 chrX 168096135 168097052 -8877088 - L2 LINE L2 -189 3083 2183 249 323 0 0 chrX 168097258 168097323 -8876817 - MIR3 SINE MIR -132 76 12 1585 178 27 11 chrX 168098202 168098534 -8875606 - MER4A LTR ERV1 0 664 269 468 156 89 0 chrX 168098543 168098633 -8875507 - MER4A LTR ERV1 -566 98 1 15195 110 53 23 chrX 168098640 168101240 -8872900 - MER4A-int LTR ERV1 -2 6596 3918 2419 93 103 19 chrX 168101217 168101367 -8872773 - MER4A-int LTR ERV1 -3337 3261 3125 * 294 29 0 0 chrX 168101367 168101402 -8872738 + (CA)n Simple_repeat Simple_repeat 1 35 0 2419 93 103 19 chrX 168101402 168101735 -8872405 - MER4A-int LTR ERV1 -3473 3125 2737 1374 149 66 8 chrX 168101735 168101977 -8872163 + LTR8 LTR ERV1 1 256 -435 4180 87 51 32 chrX 168101978 168102690 -8871450 - MER4A-int LTR ERV1 -4103 2495 1771 1055 63 11 252 chrX 168102688 168103065 -8871075 - MER4A-int LTR ERV1 -4266 1271 510 * 2411 119 90 39 chrX 168103051 168103576 -8870564 - MER4A-int LTR ERV1 -5997 601 1 1734 117 36 77 chrX 168103579 168103939 -8870201 - MER4A LTR ERV1 0 664 261 493 133 89 0 chrX 168103939 168104029 -8870111 - MER4A LTR ERV1 -566 98 1 351 203 63 0 chrX 168104035 168104114 -8870026 - MER94 DNA DNA -31 103 20 1553 282 52 2 chrX 168104557 168105018 -8869122 - LTR16C LTR ERVL -7 484 1 234 373 73 9 chrX 168105359 168105469 -8868671 - L3 LINE CR1 -6 1571 1455 23 33 0 0 chrX 168105726 168105756 -8868384 + AT_rich Low_complexity Low_complexity 1 30 0 1669 121 26 36 chrX 168106007 168106249 -8867891 - L1MB3 LINE L1 -3 6180 5937 2592 115 5 0 chrX 168106249 168106622 -8867518 + THE1C LTR MaLR 1 375 0 10725 108 33 4 chrX 168106622 168108157 -8865983 + THE1C-int LTR MaLR 1 1580 0 2509 114 19 0 chrX 168108157 168108525 -8865615 + THE1C LTR MaLR 1 375 0 1669 121 26 36 chrX 168108525 168108585 -8865555 - L1MB3 LINE L1 -243 5940 5879 870 281 124 21 chrX 168108977 168109412 -8864728 + MLT1L LTR MaLR 132 611 -4 376 264 112 16 chrX 168109453 168109578 -8864562 - LTR16A LTR ERVL 0 450 314 236 352 33 0 chrX 168109618 168109709 -8864431 - LTR16A LTR ERVL -216 234 141 274 339 65 16 chrX 168110761 168110885 -8863255 + L2 LINE L2 3182 3311 -2 308 184 39 68 chrX 168111152 168111255 -8862885 - MER34 LTR ERV1 -5 537 438 4057 163 3 29 chrX 168111261 168111826 -8862314 - L1PA15 LINE L1 -5 6160 5582 240 35 0 0 chrX 168111826 168111855 -8862285 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2025 112 3 14 chrX 168111858 168112143 -8861997 - AluSx SINE Alu -30 282 1 4057 163 3 29 chrX 168112143 168112336 -8861804 - L1PA15 LINE L1 -585 5580 5418 275 253 42 11 chrX 168112532 168112627 -8861513 - L1 LINE L1 -2179 3967 3870 3092 179 6 2 chrX 168112711 168112745 -8861395 - L1MB1 LINE L1 -134 6034 6001 2563 231 29 57 chrX 168112745 168114008 -8860132 - L1MD3 LINE L1 -743 5386 4777 * 3331 255 76 34 chrX 168113997 168114008 -8860132 - L1MD3 LINE L1 -3854 2275 2266 8343 91 2 0 chrX 168114008 168115945 -8858195 - L1PA7 LINE L1 0 6154 4209 3331 255 76 34 chrX 168115945 168118295 -8855845 - L1MD3 LINE L1 -3863 2266 160 282 307 55 0 chrX 168118436 168118599 -8855541 - L1MD3 LINE L1 -5941 178 7 1991 178 3 3 chrX 168118925 168119268 -8854872 + MLT2C1 LTR ERVL 1 343 -54 210 372 56 20 chrX 168119332 168119528 -8854612 + L2 LINE L2 559 761 -2553 347 345 76 50 chrX 168120810 168121167 -8852973 + L2 LINE L2 2431 2796 -518 341 228 13 13 chrX 168122175 168122254 -8851886 + MIR SINE MIR 184 262 0 563 332 47 30 chrX 168122278 168122513 -8851627 + MIR SINE MIR 24 262 0 1937 179 20 20 chrX 168122737 168123127 -8851013 - L1MB8 LINE L1 -6 6172 5783 1600 199 50 0 chrX 168123227 168123549 -8850591 + MER58B DNA MER1_type 4 341 0 1482 255 30 52 chrX 168123806 168124308 -8849832 - LTR16C LTR ERVL 0 491 1 588 285 157 4 chrX 168124340 168124589 -8849551 - L2 LINE L2 -12 3301 3015 356 189 0 11 chrX 168126593 168126683 -8847457 + (GAATG)n Simple_repeat Simple_repeat 3 91 0 417 184 0 0 chrX 168127761 168127870 -8846270 + (TA)n Simple_repeat Simple_repeat 1 109 0 183 147 0 0 chrX 168128747 168128758 -8845382 + (CATATA)n Simple_repeat Simple_repeat 1 11 -23 1664 161 40 50 chrX 168128758 168129137 -8845003 - THE1C LTR MaLR 0 375 1 183 147 0 0 chrX 168129137 168129159 -8844981 + (CATATA)n Simple_repeat Simple_repeat 10 34 0 756 229 37 60 chrX 168129325 168129543 -8844597 - MER58C DNA MER1_type -2 213 1 263 229 36 46 chrX 168129585 168129677 -8844463 - MLT1H LTR MaLR -10 585 454 1562 119 0 0 chrX 168129763 168129998 -8844142 - L1MA6 LINE L1 0 6300 6066 232 206 27 68 chrX 168130176 168130249 -8843891 - MIR SINE MIR -11 251 182 1742 246 32 35 chrX 168130745 168131347 -8842793 - L1ME3 LINE L1 -8 6162 5590 426 39 0 0 chrX 168131455 168131507 -8842633 + (CA)n Simple_repeat Simple_repeat 1 52 0 16906 151 49 27 chrX 168131509 168131675 -8842465 + L1M1 LINE L1 614 775 -6790 2253 96 53 31 chrX 168131675 168132031 -8842109 - THE1B LTR MaLR 0 364 1 16906 151 49 27 chrX 168132031 168133001 -8841139 + L1M1 LINE L1 775 1723 -5842 204 40 0 0 chrX 168133001 168133026 -8841114 + (GA)n Simple_repeat Simple_repeat 2 26 0 16906 151 49 27 chrX 168133026 168135547 -8838593 + L1M1 LINE L1 1723 4351 -3214 22979 47 0 5 chrX 168135557 168138411 -8835729 + L1PA4 LINE L1 1 2840 -3306 567 27 0 0 chrX 168138411 168138485 -8835655 + AluY SINE Alu 234 307 -4 20905 33 6 12 chrX 168138505 168141842 -8832298 + L1PA4 LINE L1 2827 6152 -3 520 218 0 8 chrX 168141848 168141972 -8832168 + L1M1 LINE L1 4339 4461 -3104 1166 184 34 0 chrX 168141983 168142222 -8831918 + L1M1 LINE L1 4781 5027 -2538 299 243 93 77 chrX 168542642 168542724 -8431416 + MIR SINE MIR 3 65 -143 1887 81 0 4 chrX 168542724 168542970 -8431170 - AluY SINE Alu -32 279 35 299 243 93 77 chrX 168542970 168543052 -8431088 + MIR SINE MIR 65 144 -64 473 302 173 24 chrX 168543058 168543638 -8430502 - L2 LINE L2 0 3313 2635 403 328 131 10 chrX 168545122 168545436 -8428704 - L2 LINE L2 -858 2456 2105 5600 167 40 22 chrX 168546112 168547808 -8426332 - L1MA7 LINE L1 -3 6288 4555 1885 180 0 3 chrX 168547808 168548119 -8426021 - AluJb SINE Alu -2 310 1 5600 167 40 22 chrX 168548119 168548186 -8425954 - L1MA7 LINE L1 -1736 4555 4491 25 65 0 0 chrX 168548553 168548599 -8425541 + GC_rich Low_complexity Low_complexity 1 46 0 350 258 128 97 chrX 168548628 168549050 -8425090 - L1M2 LINE L1 -5617 1232 798 21 82 0 0 chrX 168551320 168551369 -8422771 + AT_rich Low_complexity Low_complexity 1 49 0 463 153 0 0 chrX 168552005 168552077 -8422063 - AluSp/q SINE Alu -13 300 229 1811 186 19 24 chrX 168552178 168552591 -8421549 - L1MA7 LINE L1 -1694 4452 4042 847 208 7 7 chrX 168552591 168552740 -8421400 + AluJb SINE Alu 107 255 -57 1146 191 5 0 chrX 168552742 168552952 -8421188 - L1MA7 LINE L1 -2113 4033 3823 1726 206 11 55 chrX 168552952 168553409 -8420731 + L1MA9 LINE L1 5842 6278 -34 28 0 0 0 chrX 168553409 168553437 -8420703 + AT_rich Low_complexity Low_complexity 1 28 0 240 243 0 57 chrX 168553726 168553796 -8420344 - L1M4b LINE L1 -6052 807 742 7501 198 35 8 chrX 168553803 168555210 -8418930 + L1M1 LINE L1 17 1461 -6104 1952 136 60 24 chrX 168555384 168555715 -8418425 - MER61A LTR ERV1 0 343 1 2388 93 16 10 chrX 168555715 168556341 -8417799 - MER61A-int LTR ERV1 0 5217 4543 1098 138 0 0 chrX 168556344 168556504 -8417636 + AluSg/x SINE Alu 141 300 -12 11295 96 32 14 chrX 168556504 168558099 -8416041 - MER61-int LTR ERV1 -245 4972 3349 1408 232 26 12 chrX 168558099 168558463 -8415677 - L1MA7 LINE L1 -2776 3370 2998 2135 186 41 3 chrX 168558463 168558851 -8415289 + MER57A LTR ERV1 1 403 0 1408 232 26 12 chrX 168558851 168558912 -8415228 - L1MA7 LINE L1 -3148 2998 2939 445 232 0 15 chrX 168558898 168559033 -8415107 - L1M4c LINE L1 -3886 2086 2017 * 860 294 43 60 chrX 168559078 168559731 -8414409 - L1M4c LINE L1 -4488 1484 843 2033 247 76 32 chrX 168559857 168560746 -8413394 - L1M4c LINE L1 -4518 1785 777 261 295 45 64 chrX 168560890 168561046 -8413094 - L1M4c LINE L1 -5216 675 523 960 297 51 39 chrX 168561148 168561538 -8412602 - L1M4c LINE L1 -5496 395 1 271 248 57 38 chrX 168561542 168561647 -8412493 + MLT1J LTR MaLR 405 511 0 183 333 26 13 chrX 168561647 168561725 -8412415 + L3 LINE CR1 1497 1575 -2 313 331 100 0 chrX 168563260 168563390 -8410750 - MIR SINE MIR -21 241 99 352 271 181 8 chrX 168563392 168563525 -8410615 - MLT1K LTR MaLR 0 588 433 211 274 0 0 chrX 168563531 168563604 -8410536 + T-rich Low_complexity Low_complexity 1 73 0 420 306 24 0 chrX 168563630 168563754 -8410386 - MLT1K LTR MaLR -163 425 299 283 376 18 18 chrX 168563784 168563949 -8410191 - MLT1K LTR MaLR -404 184 20 299 354 105 31 chrX 168564226 168564551 -8409589 + L2 LINE L2 2407 2755 -559 250 296 23 23 chrX 168564560 168564648 -8409492 + MIR3 SINE MIR 108 195 -13 642 244 6 39 chrX 168565786 168565966 -8408174 - L2 LINE L2 -10 3303 3130 1042 254 96 77 chrX 168566864 168567396 -8406744 - MLT1G LTR MaLR -6 561 10 270 136 0 0 chrX 168567696 168567740 -8406400 + (TAG)n Simple_repeat Simple_repeat 2 45 0 290 262 29 39 chrX 168567743 168567846 -8406294 - L2 LINE L2 -44 3269 3168 622 291 162 8 chrX 168567905 168568152 -8405988 + MLT1H LTR MaLR 35 319 -230 310 297 99 10 chrX 168568768 168568869 -8405271 + L2 LINE L2 3137 3246 -26 661 213 144 12 chrX 168569300 168569460 -8404680 - MER5A DNA MER1_type 0 189 9 23 0 0 0 chrX 168571358 168571381 -8402759 + AT_rich Low_complexity Low_complexity 1 23 0 201 94 0 0 chrX 168571930 168571962 -8402178 + (CAA)n Simple_repeat Simple_repeat 1 32 0 191 240 60 0 chrX 168572315 168572365 -8401775 + L2 LINE L2 3261 3313 0 * 596 294 136 6 chrX 168572363 168572725 -8401415 + L2 LINE L2 2592 2974 -340 962 234 88 15 chrX 168572829 168573103 -8401037 - Charlie4a DNA MER1_type -163 345 52 260 175 0 0 chrX 168573147 168573187 -8400953 + L2 LINE L2 3251 3290 -23 657 290 85 5 chrX 168573390 168573614 -8400526 - MLT1L LTR MaLR -13 602 361 231 236 28 28 chrX 168573757 168573829 -8400311 - MLT1J LTR MaLR -345 166 95 25 31 0 0 chrX 168574202 168574234 -8399906 + AT_rich Low_complexity Low_complexity 1 32 0 441 220 143 36 chrX 168574290 168574513 -8399627 - L1MC4a LINE L1 -1881 5927 5681 632 144 21 0 chrX 168574520 168574617 -8399523 - Tigger7 DNA MER2_type 0 2587 2489 209 250 18 0 chrX 168574690 168574746 -8399394 + (TA)n Simple_repeat Simple_repeat 1 57 0 545 285 92 19 chrX 168574758 168574965 -8399175 - L1MC4a LINE L1 -2143 5665 5444 214 261 62 0 chrX 168575292 168575357 -8398783 - MIR SINE MIR 0 262 194 2369 111 16 40 chrX 168575403 168575783 -8398357 - L1MA7 LINE L1 -2 6289 5919 685 266 6 12 chrX 168575783 168575956 -8398184 - MIR SINE MIR -72 190 19 394 291 171 0 chrX 168575960 168576118 -8398022 - MER5A DNA MER1_type -2 187 3 22 0 0 0 chrX 168576599 168576621 -8397519 + AT_rich Low_complexity Low_complexity 1 22 0 466 327 48 19 chrX 168578042 168578250 -8395890 + MIR SINE MIR 1 214 -48 290 251 42 90 chrX 168578311 168578478 -8395662 - HAL1 LINE L1 -1743 764 606 21 0 0 0 chrX 168579553 168579574 -8394566 + AT_rich Low_complexity Low_complexity 1 21 0 709 191 107 24 chrX 168579582 168579750 -8394390 - MER5A DNA MER1_type -1 188 7 491 182 10 63 chrX 168579873 168580008 -8394132 - MIR SINE MIR -25 237 38 460 236 50 29 chrX 168580253 168580393 -8393747 + HAL1 LINE L1 272 414 -2093 660 299 5 19 chrX 168580395 168580602 -8393538 - LTR16A1 LTR ERVL -1 456 253 1818 323 117 59 chrX 168580866 168582215 -8391925 + HAL1 LINE L1 420 1846 -661 777 263 64 29 chrX 168582270 168582616 -8391524 + HAL1 LINE L1 2149 2506 -1 414 307 7 40 chrX 168583234 168583384 -8390756 - MIR SINE MIR -48 214 70 1606 250 133 28 chrX 168584517 168584938 -8389202 - L1M4c LINE L1 -4473 2484 2109 2292 106 3 0 chrX 168584938 168585241 -8388899 - AluSx SINE Alu -8 304 1 1606 250 133 28 chrX 168585241 168585889 -8388251 - L1M4c LINE L1 -4848 2109 1262 405 200 12 0 chrX 168585967 168586052 -8388088 - MLT1B LTR MaLR -256 134 49 269 299 103 55 chrX 168586052 168586323 -8387817 - L1M4c LINE L1 -5796 1059 776 453 223 95 8 chrX 168586451 168586657 -8387483 - L1M4c LINE L1 -6371 484 11 21 57 0 0 chrX 168587302 168587337 -8386803 + AT_rich Low_complexity Low_complexity 1 35 0 2331 100 0 3 chrX 168587846 168588146 -8385994 + AluSx SINE Alu 1 299 -13 1670 173 7 24 chrX 168588156 168588445 -8385695 + AluJb SINE Alu 1 284 -28 2096 57 0 0 chrX 168588564 168588837 -8385303 - AluY SINE Alu 0 311 39 12628 158 99 13 chrX 168588838 168593130 -8381010 + L1MA2 LINE L1 1449 6391 -1332 2229 122 6 0 chrX 168593130 168593441 -8380699 - AluSq SINE Alu 0 313 1 12628 158 99 13 chrX 168593441 168594900 -8379240 + L1MA2 LINE L1 6391 7723 0 2004 266 45 12 chrX 168594996 168595555 -8378585 - L1M4b LINE L1 -6273 586 10 364 303 92 15 chrX 168596403 168596598 -8377542 - L2 LINE L2 -622 2692 2483 297 294 63 7 chrX 168596598 168596741 -8377399 - L2 LINE L2 -1066 2248 2098 876 259 32 0 chrX 168597637 168597853 -8376287 + MIR SINE MIR 40 262 0 571 181 52 9 chrX 168598436 168598552 -8375588 + MER5B DNA MER1_type 1 121 -57 487 273 149 0 chrX 168598576 168598737 -8375403 + MER5A DNA MER1_type 4 188 -1 324 169 28 14 chrX 168598784 168598855 -8375285 + MLT1A2 LTR MaLR 1 72 -302 1465 242 32 64 chrX 168598927 168599460 -8374680 - LTR8 LTR ERV1 0 691 176 257 203 0 0 chrX 168599463 168599522 -8374618 + MLT1A2-int LTR MaLR 1677 1735 0 392 217 22 11 chrX 168599522 168599614 -8374526 + MLT1A2 LTR MaLR 1 93 -281 2052 197 20 0 chrX 168599773 168600169 -8373971 - LTR57 LTR ERVL -7 404 1 841 199 72 82 chrX 168600169 168600460 -8373680 + MLT1A2 LTR MaLR 80 367 -7 258 95 0 0 chrX 168600626 168600668 -8373472 + (CA)n Simple_repeat Simple_repeat 1 42 0 711 265 21 0 chrX 168600711 168600900 -8373240 + MER58A DNA MER1_type 1 193 -31 1202 155 63 14 chrX 168601673 168601957 -8372183 + L1MA9 LINE L1 6014 6311 -1 383 340 97 11 chrX 168601992 168602177 -8371963 - MIR SINE MIR -4 258 58 246 32 0 0 chrX 168602338 168602369 -8371771 + (TG)n Simple_repeat Simple_repeat 2 32 0 201 182 0 23 chrX 168602380 168602424 -8371716 - MIR3 SINE MIR -156 52 10 251 254 70 0 chrX 168602796 168602867 -8371273 - ERVL LTR ERVL -2282 3482 3407 237 68 17 68 chrX 168602927 168602986 -8371154 + (TTTTTG)n Simple_repeat Simple_repeat 1 56 0 1713 118 8 12 chrX 168603003 168603249 -8370891 - AluSq SINE Alu -32 281 37 385 221 0 0 chrX 168603430 168603525 -8370615 + L1M4c LINE L1 1463 1557 -4827 1918 186 75 2 chrX 168603525 168603924 -8370216 - MSTA LTR MaLR 0 428 1 4434 174 40 16 chrX 168603924 168604814 -8369326 - MSTA-int LTR MaLR 0 1651 740 487 306 17 0 chrX 168604859 168605039 -8369101 + L1M4c LINE L1 1553 1735 -4649 2112 94 0 39 chrX 168605658 168605965 -8368175 - AluSx SINE Alu 0 312 18 342 273 127 0 chrX 168606072 168606237 -8367903 + L1MC5 LINE L1 7693 7878 -83 311 292 56 50 chrX 168607587 168607748 -8366392 - LTR16C LTR ERVL -162 329 168 1847 133 66 30 chrX 168608270 168608632 -8365508 - THE1C LTR MaLR 0 375 1 2481 147 20 15 chrX 168608636 168609093 -8365047 - THE1C-int LTR MaLR -4 1576 1118 2163 137 464 12 chrX 168609202 168609777 -8364363 - THE1C-int LTR MaLR -739 841 7 1787 147 58 19 chrX 168609783 168610144 -8363996 - THE1C LTR MaLR 0 375 1 192 295 0 95 chrX 168611782 168611877 -8362263 - L2 LINE L2 -50 3222 3137 1483 176 3 76 chrX 168612190 168612520 -8361620 - AluJb SINE Alu -6 306 1 204 40 0 0 chrX 168612577 168612602 -8361538 + (TG)n Simple_repeat Simple_repeat 2 26 0 256 317 31 25 chrX 168612790 168612951 -8361189 - MLT1J2 LTR MaLR -3 447 286 322 278 79 13 chrX 168613007 168613187 -8360953 - MLT1J2 LTR MaLR -257 189 1 400 314 126 28 chrX 168613752 168614007 -8360133 + HAL1 LINE L1 812 1091 -1416 357 284 165 88 chrX 168614011 168614521 -8359619 + L1M2 LINE L1 780 1328 -5521 322 127 28 0 chrX 168615283 168615354 -8358786 + (GGGTG)n Simple_repeat Simple_repeat 1 73 0 1785 190 14 3 chrX 168616079 168616432 -8357708 + MSTB LTR MaLR 57 413 -13 788 292 62 3 chrX 168616435 168616836 -8357304 - LTR16C LTR ERVL -27 464 3 721 289 18 76 chrX 168618240 168618621 -8355519 + LTR16B LTR ERVL 106 464 0 780 279 58 80 chrX 168619603 168619946 -8354194 + LTR16C LTR ERVL 85 419 -72 1393 219 36 36 chrX 168619946 168620311 -8353829 + MLT1A1 LTR MaLR 1 365 0 780 279 58 80 chrX 168620311 168620380 -8353760 + LTR16C LTR ERVL 419 488 -3 1704 186 3 10 chrX 168621184 168621485 -8352655 - AluJo SINE Alu -13 299 1 1651 196 31 52 chrX 168622038 168622523 -8351617 + L1MC4 LINE L1 7337 7811 -231 725 226 0 46 chrX 168622523 168622718 -8351422 - AluJo SINE Alu 0 312 127 33 43 0 0 chrX 168623024 168623071 -8351069 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chrX 168623128 168623149 -8350991 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chrX 168623204 168623266 -8350874 + AT_rich Low_complexity Low_complexity 1 62 0 262 300 83 25 chrX 168623320 168623440 -8350700 + MIR SINE MIR 16 142 -66 1990 151 7 7 chrX 168624574 168624932 -8349208 - AluSx SINE Alu 0 364 7 1981 274 81 24 chrX 168625091 168625432 -8348708 + HAL1 LINE L1 43 363 -2144 1717 212 33 42 chrX 168625432 168625885 -8348255 - LTR2 LTR ERV1 0 449 1 1981 274 81 24 chrX 168625885 168626345 -8347795 + HAL1 LINE L1 363 890 -1617 262 0 0 50 chrX 168626347 168626387 -8347753 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 4432 111 1 0 chrX 168626450 168627141 -8346999 - L1PA8 LINE L1 -948 5198 4507 6763 70 12 2 chrX 168627141 168628114 -8346026 + L1PA8 LINE L1 5186 6167 -5 3377 254 75 14 chrX 168628116 168629461 -8344679 + HAL1 LINE L1 968 2394 -113 994 225 12 8 chrX 168629604 168629853 -8344287 + L1MC5 LINE L1 6990 7239 -722 771 283 73 29 chrX 168629936 168630964 -8343176 + L1ME3A LINE L1 4876 5952 -218 735 250 6 0 chrX 168632304 168632480 -8341660 + MER5B DNA MER1_type 2 178 0 493 238 186 0 chrX 168632491 168632639 -8341501 + MER5A DNA MER1_type 4 183 -6 207 214 0 0 chrX 168633054 168633096 -8341044 + MIR SINE MIR 216 257 -5 318 324 30 72 chrX 168634011 168634273 -8339867 + LTR16A1 LTR ERVL 195 445 -12 275 305 85 24 chrX 168635688 168635770 -8338370 + MER5A DNA MER1_type 37 123 -66 259 317 39 10 chrX 168635887 168635991 -8338149 + L2 LINE L2 3188 3294 -19 31 0 0 0 chrX 168636255 168636286 -8337854 + AT_rich Low_complexity Low_complexity 1 31 0 207 333 13 13 chrX 168636316 168636394 -8337746 - MIR SINE MIR -126 136 59 385 250 311 11 chrX 168636897 168637077 -8337063 + MLT1K LTR MaLR 17 250 -338 1313 93 52 0 chrX 168637125 168637319 -8336821 - L1PA13 LINE L1 -8 6155 5952 836 295 26 57 chrX 168637962 168638386 -8335754 - LTR67 LTR ERVL -33 524 114 6744 189 37 35 chrX 168638463 168639093 -8335047 - L1 LINE L1 -1052 5094 4467 1429 170 193 33 chrX 168639093 168639487 -8334653 - MSTB2 LTR MaLR 0 457 1 6744 189 37 35 chrX 168639487 168640433 -8333707 - L1 LINE L1 -1679 4467 3510 2131 107 0 26 chrX 168640433 168640742 -8333398 - AluSx SINE Alu -11 301 1 6744 189 37 35 chrX 168640742 168640934 -8333206 - L1 LINE L1 -2636 3510 3320 4565 225 61 12 chrX 168640933 168642008 -8332132 - L1PA13 LINE L1 -5554 1233 106 * 215 377 0 13 chrX 168642013 168642090 -8332050 - MIR SINE MIR -165 97 22 207 114 0 0 chrX 168643425 168643460 -8330680 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 337 11 22 chrX 168643538 168643627 -8330513 - L2 LINE L2 -675 2639 2552 1353 153 134 15 chrX 168644386 168644654 -8329486 - AluJb SINE Alu -2 300 1 2355 264 69 7 chrX 168648222 168649440 -8324700 - L1ME LINE L1 -704 5462 4166 261 222 36 126 chrX 168649760 168649927 -8324213 + MIR SINE MIR 108 259 -3 2109 95 7 7 chrX 168650481 168650802 -8323338 + AluSq SINE Alu 1 313 0 2295 222 131 97 chrX 168650848 168651349 -8322791 + L1MD3 LINE L1 6564 7046 -949 366 163 214 20 chrX 168651349 168651447 -8322693 + MLT1F1 LTR MaLR 9 125 -442 2295 222 131 97 chrX 168651447 168652029 -8322111 + L1MD3 LINE L1 7046 7993 -2 210 349 61 30 chrX 168652093 168652225 -8321915 + MER5A DNA MER1_type 53 188 -1 1632 176 31 28 chrX 168653056 168653409 -8320731 + MLT2D LTR ERVL 1 354 -60 189 0 0 0 chrX 168653410 168653431 -8320709 + (TC)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chrX 168653580 168653603 -8320537 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 420 20 0 0 chrX 168653602 168653651 -8320489 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 371 0 11 chrX 168653906 168653995 -8320145 + MER5B DNA MER1_type 13 100 -78 2014 74 0 0 chrX 168655882 168656125 -8318015 - AluSq SINE Alu -70 243 1 21 0 0 0 chrX 168656758 168656779 -8317361 + AT_rich Low_complexity Low_complexity 1 21 0 855 174 63 74 chrX 168656779 168656994 -8317146 - L1MC4 LINE L1 -8 8034 7818 525 100 0 0 chrX 168656994 168657084 -8317056 + (TA)n Simple_repeat Simple_repeat 2 91 0 2201 86 7 3 chrX 168657084 168657374 -8316766 - AluSx SINE Alu -21 291 1 855 174 63 74 chrX 168657374 168657508 -8316632 - L1MC4 LINE L1 -222 7820 7688 324 319 125 82 chrX 168658429 168658990 -8315150 + L1M2 LINE L1 823 1407 -5442 3529 180 73 25 chrX 168659094 168660020 -8314120 - L1MA9 LINE L1 -38 6274 5258 1634 172 129 65 chrX 168660020 168660577 -8313563 - LTR49 LTR ERV1 0 595 3 3529 180 73 25 chrX 168660577 168661009 -8313131 - L1MA9 LINE L1 -1054 5258 4848 2479 137 20 0 chrX 168661019 168661414 -8312726 - MER57A LTR ERV1 0 403 1 15367 114 73 44 chrX 168661414 168664181 -8309959 - MER57A-int LTR ERV1 0 7537 4692 1282 136 5 0 chrX 168664183 168664389 -8309751 - MER57A LTR ERV1 -196 207 1 340 111 0 0 chrX 168664429 168664483 -8309657 + LTR24B LTR ERV1 1 54 -522 1094 200 28 22 chrX 168664679 168664999 -8309141 + LTR23-int LTR ERV1 373 694 -4429 438 290 21 7 chrX 168665771 168665916 -8308224 + LTR23-int LTR ERV1 1129 1275 -5056 4953 126 16 24 chrX 168665924 168666571 -8307569 + L1MC1 LINE L1 5471 6112 -221 1879 184 94 8 chrX 168666571 168666837 -8307303 - MSTB LTR MaLR 0 426 114 185 0 40 0 chrX 168666837 168666862 -8307278 + (CGGGGG)n Simple_repeat Simple_repeat 2 27 0 1879 184 94 8 chrX 168666862 168666987 -8307153 - MSTB LTR MaLR -312 114 1 4953 126 16 24 chrX 168666987 168667189 -8306951 + L1MC1 LINE L1 6112 6314 -19 716 206 7 7 chrX 168667944 168668090 -8306050 - MLT1A2 LTR MaLR -11 363 218 524 131 71 0 chrX 168668200 168668299 -8305841 - L1 LINE L1 -1998 4148 4043 3468 88 4 6 chrX 168668308 168668807 -8305333 + L1MA1 LINE L1 5805 6302 0 400 200 44 11 chrX 168668832 168668922 -8305218 - MLT1A2 LTR MaLR -273 101 9 375 312 86 18 chrX 168669678 168669899 -8304241 + HAL1 LINE L1 2083 2318 -189 25 0 0 0 chrX 168669920 168669945 -8304195 + AT_rich Low_complexity Low_complexity 1 25 0 194 211 70 28 chrX 168670261 168670332 -8303808 + MER5C DNA MER1_type 96 169 -155 185 259 0 69 chrX 168670943 168671001 -8303139 + L2 LINE L2 3112 3165 -107 47 33 0 0 chrX 168671146 168671207 -8302933 + AT_rich Low_complexity Low_complexity 1 61 0 221 311 66 38 chrX 168671590 168671696 -8302444 - L2 LINE L2 -20 3293 3185 30 45 0 0 chrX 168671834 168671878 -8302262 + AT_rich Low_complexity Low_complexity 1 44 0 249 288 123 7 chrX 168672165 168672311 -8301829 + L1MC5 LINE L1 7342 7504 -457 732 208 101 39 chrX 168672349 168672657 -8301483 + L1MC5 LINE L1 7605 7931 -30 22 0 0 0 chrX 168673225 168673247 -8300893 + AT_rich Low_complexity Low_complexity 1 22 0 974 195 5 5 chrX 168673437 168673627 -8300513 + MLT1B LTR MaLR 201 390 0 268 362 31 16 chrX 168675073 168675200 -8298940 + MIR3 SINE MIR 32 160 -48 246 344 129 0 chrX 168675319 168675482 -8298658 - MIR SINE MIR -63 199 16 189 261 58 72 chrX 168677996 168678065 -8296075 + MIR3 SINE MIR 3 70 -138 779 163 7 7 chrX 168678134 168678275 -8295865 + Ricksha DNA DNA 1 141 -3105 1577 167 0 7 chrX 168678310 168678579 -8295561 - AluSx SINE Alu 0 312 46 2643 146 2 14 chrX 168678605 168679045 -8295095 + Ricksha DNA DNA 1690 2124 -1122 264 235 0 0 chrX 168679047 168679115 -8295025 + C-rich Low_complexity Low_complexity 3 70 0 883 140 23 10 chrX 168679115 168679516 -8294624 + CT-rich Low_complexity Low_complexity 1 406 0 1402 145 12 64 chrX 168679516 168679765 -8294375 - AluSx SINE Alu -16 296 61 4366 153 23 31 chrX 168679765 168680147 -8293993 + Ricksha DNA DNA 2307 2690 -556 2234 82 7 13 chrX 168680147 168680433 -8293707 + AluSq SINE Alu 1 286 -27 499 70 12 12 chrX 168680433 168680519 -8293621 + (CA)n Simple_repeat Simple_repeat 2 87 0 2234 82 7 13 chrX 168680519 168680538 -8293602 + AluSq SINE Alu 286 304 -9 4366 153 23 31 chrX 168680538 168681094 -8293046 + Ricksha DNA DNA 2690 3238 -8 683 285 104 11 chrX 168681104 168681458 -8292682 - LTR33 LTR ERVL -134 387 1 195 129 0 0 chrX 168681936 168681967 -8292173 + (TG)n Simple_repeat Simple_repeat 2 32 0 5278 82 9 1 chrX 168684891 168685577 -8288563 + LTR8 LTR ERV1 1 691 0 315 369 46 0 chrX 168686649 168686779 -8287361 - L2 LINE L2 -10 3262 3127 247 32 0 0 chrX 168686812 168686843 -8287297 + (TTTG)n Simple_repeat Simple_repeat 2 136 0 2236 89 0 0 chrX 168686843 168687125 -8287015 - AluY SINE Alu -1 312 1 4444 224 46 38 chrX 168687270 168689547 -8284593 + L1M4 LINE L1 334 2762 -3884 2535 141 6 32 chrX 168689546 168690275 -8283865 - L1MA5 LINE L1 -629 5671 4958 * 3314 161 8 21 chrX 168690275 168690901 -8283239 + L1MA5 LINE L1 5677 6300 0 1410 256 87 3 chrX 168690910 168691497 -8282643 + L1M4 LINE L1 2754 3389 -3255 2106 132 0 0 chrX 168691532 168691836 -8282304 - AluY SINE Alu -6 305 2 288 122 0 0 chrX 168691837 168691878 -8282262 - L1M1 LINE L1 -7509 56 16 2168 114 0 32 chrX 168692001 168692316 -8281824 + AluSq SINE Alu 1 305 -8 789 190 0 52 chrX 168692361 168692535 -8281605 - L1MB5 LINE L1 0 6174 6010 18030 171 48 20 chrX 168692537 168697441 -8276699 + L1MA3 LINE L1 704 5748 -1817 6379 135 31 6 chrX 168697439 168698883 -8275257 + L1MA3 LINE L1 6242 7724 0 * 26 50 0 0 chrX 168698899 168698939 -8275201 + AT_rich Low_complexity Low_complexity 1 40 0 528 310 66 60 chrX 168699143 168699524 -8274616 + L3 LINE CR1 522 904 -673 274 23 47 0 chrX 168700010 168700053 -8274087 + (TTTTA)n Simple_repeat Simple_repeat 2 46 0 9405 35 2 0 chrX 168700059 168701966 -8272174 - L1PA4 LINE L1 -8 6147 4239 330 293 9 60 chrX 168702192 168702370 -8271770 + L1MC/D LINE L1 5684 5864 -257 21 0 0 0 chrX 168702427 168702448 -8271692 + AT_rich Low_complexity Low_complexity 1 21 0 936 210 78 47 chrX 168702465 168702722 -8271418 + LTR40a LTR ERVL 3 267 -252 5673 127 29 3 chrX 168702782 168703881 -8270259 - L1MA8 LINE L1 -75 6216 5096 579 29 0 0 chrX 168704297 168704366 -8269774 + (CA)n Simple_repeat Simple_repeat 2 70 0 271 333 11 0 chrX 168705090 168705180 -8268960 + MIR SINE MIR 48 138 -124 421 182 0 126 chrX 168705240 168705383 -8268757 + L1M3 LINE L1 5403 5527 -641 234 132 47 66 chrX 168706280 168706386 -8267754 + (TATAA)n Simple_repeat Simple_repeat 4 107 0 233 238 68 88 chrX 168706492 168706639 -8267501 - MER65B LTR ERV1 -77 454 311 1055 210 42 91 chrX 168706969 168707322 -8266818 - MER58B DNA MER1_type -1 340 5 27 0 0 0 chrX 168707850 168707877 -8266263 + AT_rich Low_complexity Low_complexity 1 27 0 2328 113 0 0 chrX 168708167 168708476 -8265664 + AluSx SINE Alu 1 309 -3 241 347 10 82 chrX 168710265 168710363 -8263777 + MER91A DNA MER1_type 98 188 -8 539 227 0 0 chrX 168710448 168710558 -8263582 - MER94 DNA DNA -20 114 5 1805 106 118 72 chrX 168710558 168710906 -8263234 - THE1B LTR MaLR 0 364 1 10377 97 64 18 chrX 168710906 168712416 -8261724 - THE1B-int LTR MaLR 0 1580 1 1019 131 12 6 chrX 168712416 168712576 -8261564 - THE1B LTR MaLR 0 364 204 882 74 0 0 chrX 168712576 168712684 -8261456 - AluSq SINE Alu -72 241 134 506 182 14 35 chrX 168712694 168712837 -8261303 - L1MA8 LINE L1 -3 6288 6149 1241 121 15 0 chrX 168712837 168713035 -8261105 + L1MA7 LINE L1 5688 5888 -403 300 53 0 0 chrX 168714010 168714048 -8260092 + (CA)n Simple_repeat Simple_repeat 2 39 0 41 21 0 0 chrX 168714164 168714212 -8259928 + AT_rich Low_complexity Low_complexity 1 48 0 1462 185 127 10 chrX 168714212 168714526 -8259614 + MSTB LTR MaLR 1 351 -75 271 246 0 15 chrX 168714538 168714672 -8259468 + (TA)n Simple_repeat Simple_repeat 1 132 0 184 286 41 0 chrX 168715069 168715118 -8259022 - MIR SINE MIR -122 86 36 185 277 46 0 chrX 168716043 168716108 -8258032 + L3 LINE CR1 977 1044 -533 2386 296 58 30 chrX 168716792 168717746 -8256394 + L1M4b LINE L1 12 1224 -5635 799 182 22 62 chrX 168718205 168718430 -8255710 + L1M4b LINE L1 1219 1434 -5425 1355 262 15 3 chrX 168718691 168719034 -8255106 + L1PA13 LINE L1 264 610 -6177 21 57 0 0 chrX 168720037 168720072 -8254068 + AT_rich Low_complexity Low_complexity 1 35 0 1033 277 106 56 chrX 168720293 168720531 -8253609 + L1MC5 LINE L1 6741 6966 -995 375 113 0 0 chrX 168720531 168720593 -8253547 + (CA)n Simple_repeat Simple_repeat 2 63 0 1033 277 106 56 chrX 168720593 168721029 -8253111 + L1MC5 LINE L1 6966 7379 -582 180 0 0 0 chrX 168721029 168721049 -8253091 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 1033 277 106 56 chrX 168721049 168721377 -8252763 + L1MC5 LINE L1 7379 7794 -167 1849 133 48 48 chrX 168721388 168721763 -8252377 - THE1C LTR MaLR 0 375 1 391 317 49 0 chrX 168721898 168722062 -8252078 - L1M4 LINE L1 -2114 4032 3861 22 0 0 0 chrX 168722110 168722132 -8252008 + AT_rich Low_complexity Low_complexity 1 22 0 15612 169 32 6 chrX 168722132 168729352 -8244788 - L1MA2 LINE L1 0 7723 12 699 297 94 18 chrX 168729604 168729944 -8244196 + HAL1b LINE L1 280 645 -703 32 0 0 0 chrX 168729976 168730008 -8244132 + AT_rich Low_complexity Low_complexity 1 32 0 1366 185 11 8 chrX 168730443 168730713 -8243427 - L1MC4a LINE L1 -401 7407 7093 299 245 11 0 chrX 168730714 168730808 -8243332 + (TA)n Simple_repeat Simple_repeat 1 95 0 388 113 0 0 chrX 168730818 168730880 -8243260 + L1MC3 LINE L1 7031 7092 -693 738 198 0 0 chrX 168730906 168731083 -8243057 + (TA)n Simple_repeat Simple_repeat 2 178 0 254 133 0 0 chrX 168731125 168731170 -8242970 - L1MC4 LINE L1 -1339 6703 6659 3570 173 74 3 chrX 168731207 168731673 -8242467 + L1MC3 LINE L1 6367 6897 -888 240 111 0 0 chrX 168731673 168731709 -8242431 + (CA)n Simple_repeat Simple_repeat 1 36 0 3570 173 74 3 chrX 168731709 168731920 -8242220 + L1MC3 LINE L1 6897 7092 -693 1494 174 22 7 chrX 168731959 168732235 -8241905 - L1MC3 LINE L1 -1139 6646 6367 214 383 26 9 chrX 168733719 168733834 -8240306 + L2 LINE L2 3156 3272 0 184 30 61 0 chrX 168736542 168736575 -8237565 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2252 84 0 0 chrX 168736577 168736862 -8237278 - AluSc SINE Alu -24 285 1 203 331 89 45 chrX 168736863 168737020 -8237120 - L2 LINE L2 -475 2839 2676 6165 153 19 14 chrX 168738668 168740600 -8233540 - L1MA8 LINE L1 -2 6289 4346 5235 173 40 16 chrX 168740595 168742254 -8231886 - L1MA4 LINE L1 -6 6294 4587 * 467 71 0 0 chrX 168742254 168742324 -8231816 - L1MA2 LINE L1 0 6304 6235 5235 173 40 16 chrX 168742324 168742624 -8231516 - L1MA4 LINE L1 -1713 4587 4296 610 288 40 0 chrX 168742627 168742804 -8231336 + MIR SINE MIR 66 249 -13 3457 132 9 2 chrX 168743225 168743764 -8230376 - L1PA14 LINE L1 -2 6159 5617 1479 251 52 38 chrX 168743791 168743873 -8230267 + L1ME1 LINE L1 5601 5680 -486 1892 156 0 20 chrX 168743873 168744175 -8229965 - AluJo SINE Alu -14 298 3 1479 251 52 38 chrX 168744175 168744649 -8229491 + L1ME1 LINE L1 5680 6165 -1 384 296 101 30 chrX 168744644 168744963 -8229177 - L1M4c LINE L1 -4742 2545 2040 * 26 30 0 0 chrX 168745510 168745543 -8228597 + AT_rich Low_complexity Low_complexity 1 33 0 276 162 0 40 chrX 168745543 168745617 -8228523 - L1MA3 LINE L1 0 6305 6235 1703 136 88 28 chrX 168745617 168745969 -8228171 - THE1C LTR MaLR 0 375 3 930 286 59 44 chrX 168746446 168746969 -8227171 - MLT1G3 LTR MaLR -4 563 7 29 0 0 0 chrX 168748153 168748182 -8225958 + AT_rich Low_complexity Low_complexity 1 29 0 524 128 0 0 chrX 168749715 168749825 -8224315 + AluSg/x SINE Alu 203 312 0 325 304 115 29 chrX 168749850 168750093 -8224047 - L1M4c LINE L1 -6269 735 472 476 205 103 58 chrX 168754759 168754915 -8219225 + MER5A DNA MER1_type 27 189 0 3587 202 24 11 chrX 168755027 168755751 -8218389 - LTR68 LTR ERV1 -7 733 1 1552 236 35 56 chrX 168757649 168758128 -8216012 - MER110 LTR ERV1 -22 469 1 239 124 52 21 chrX 168758277 168758374 -8215766 + (TA)n Simple_repeat Simple_repeat 1 100 0 300 146 34 0 chrX 168758931 168759020 -8215120 + (TA)n Simple_repeat Simple_repeat 1 92 0 2116 249 119 22 chrX 168759025 168759757 -8214383 - Charlie7 DNA MER1_type -79 2533 1685 306 0 0 0 chrX 168759757 168759791 -8214349 + (TG)n Simple_repeat Simple_repeat 2 35 0 2116 249 119 22 chrX 168759791 168760014 -8214126 - Charlie7 DNA MER1_type -927 1685 1485 394 290 205 0 chrX 168760026 168760226 -8213914 - Charlie7 DNA MER1_type -2271 341 101 207 170 191 0 chrX 168761274 168761321 -8212819 - MER5A DNA MER1_type -105 84 29 820 222 6 6 chrX 168761528 168761704 -8212436 + MER5B DNA MER1_type 3 178 0 218 312 196 7 chrX 168761736 168761874 -8212266 + MER5A DNA MER1_type 26 189 0 25 51 0 0 chrX 168761880 168761919 -8212221 + AT_rich Low_complexity Low_complexity 1 39 0 2964 189 7 0 chrX 168761919 168762492 -8211648 - L1MB1 LINE L1 -1 6167 5591 758 176 14 14 chrX 168762493 168762635 -8211505 - L1M4c LINE L1 -6888 142 1 5403 193 22 12 chrX 168762641 168762867 -8211273 + L1MC1 LINE L1 4890 5112 -1221 2365 81 0 7 chrX 168762867 168763176 -8210964 + AluSx SINE Alu 1 307 -5 5403 193 22 12 chrX 168763176 168764380 -8209760 + L1MC1 LINE L1 5112 6332 -1 690 312 89 24 chrX 168764381 168764437 -8209703 - L2 LINE L2 -618 2696 2645 2045 153 56 63 chrX 168764437 168764868 -8209272 + MSTA LTR MaLR 1 428 0 690 312 89 24 chrX 168764868 168765103 -8209037 - L2 LINE L2 -669 2645 2386 1479 163 15 0 chrX 168765735 168766005 -8208135 + L1MB2 LINE L1 5895 6168 -3 257 299 15 0 chrX 168766255 168766322 -8207818 + MIR SINE MIR 65 132 -130 258 32 0 0 chrX 168766582 168766613 -8207527 + (TC)n Simple_repeat Simple_repeat 2 32 0 201 121 0 0 chrX 168766614 168766647 -8207493 + (CA)n Simple_repeat Simple_repeat 2 34 0 2077 128 3 0 chrX 168767728 168768024 -8206116 - AluSx SINE Alu -15 297 1 187 316 53 26 chrX 168768975 168769051 -8205089 - L3 LINE CR1 -11 1566 1489 390 323 70 0 chrX 168769151 168769337 -8204803 + MIR SINE MIR 36 234 -28 883 34 0 17 chrX 168769341 168769458 -8204682 + L1P LINE L1 1824 1938 -4208 539 323 62 31 chrX 168769458 168769746 -8204394 - L3 LINE CR1 -949 628 332 290 294 11 0 chrX 168771329 168771421 -8202719 + L1ME3A LINE L1 3 95 -5975 1499 289 83 6 chrX 168771574 168772462 -8201678 + L1ME3A LINE L1 2545 3501 -2579 1103 265 111 39 chrX 168772499 168772985 -8201155 + L1ME3A LINE L1 5471 5991 -113 25 31 0 0 chrX 168773055 168773087 -8201053 + AT_rich Low_complexity Low_complexity 1 32 0 281 335 48 20 chrX 168773594 168773842 -8200298 - L1MC/D LINE L1 -1939 5869 5615 26 50 0 0 chrX 168774354 168774394 -8199746 + AT_rich Low_complexity Low_complexity 1 40 0 2260 99 9 0 chrX 168775610 168775932 -8198208 + L1PA14 LINE L1 5833 6157 -4 2375 185 36 20 chrX 168775954 168776783 -8197357 - L1 LINE L1 -3563 4002 3165 2219 109 10 10 chrX 168777305 168777616 -8196524 - AluSx SINE Alu -1 311 1 304 130 36 11 chrX 168777990 168778070 -8196070 - MLT1H1 LTR MaLR -19 536 297 354 45 0 0 chrX 168778182 168778226 -8195914 + (CA)n Simple_repeat Simple_repeat 2 45 0 469 317 94 28 chrX 168778255 168778574 -8195566 + L1M4 LINE L1 77 416 -6126 1620 167 101 10 chrX 168778654 168778960 -8195180 + L1M1 LINE L1 13 346 -7219 446 300 38 55 chrX 168779107 168779583 -8194557 - L1MC/D LINE L1 -1117 5029 4562 1704 171 47 44 chrX 168780142 168780504 -8193636 - MLT1A1 LTR MaLR 0 365 3 24 0 0 0 chrX 168780862 168780886 -8193254 + AT_rich Low_complexity Low_complexity 1 24 0 5559 177 24 20 chrX 168780948 168782386 -8191754 - L1MA9 LINE L1 -105 6207 4749 6512 77 18 33 chrX 168782386 168783468 -8190672 - L1PA12 LINE L1 -3 6165 5076 5559 177 24 20 chrX 168783468 168784049 -8190091 - L1MA9 LINE L1 -1563 4749 4172 500 292 40 53 chrX 168784518 168784744 -8189396 - MIR SINE MIR -24 238 16 339 341 16 8 chrX 168784862 168784991 -8189149 - L2 LINE L2 0 3313 3184 2667 68 0 22 chrX 168786214 168786580 -8187560 + L1PB1 LINE L1 5776 6133 -18 24 32 0 0 chrX 168787365 168787396 -8186744 + AT_rich Low_complexity Low_complexity 1 31 0 291 259 0 0 chrX 168787737 168787818 -8186322 + MLT1I LTR MaLR 326 406 -3 674 160 0 0 chrX 168787918 168788037 -8186103 - L1MA5 LINE L1 0 6300 6182 2255 117 0 0 chrX 168788839 168789138 -8185002 - AluSx SINE Alu -13 299 1 279 355 103 19 chrX 168789554 168789709 -8184431 + L2 LINE L2 3100 3267 -5 1454 167 106 28 chrX 168789780 168790062 -8184078 - AluJb SINE Alu -8 304 1 1872 170 50 8 chrX 168790070 168790429 -8183711 - L1PB4 LINE L1 -1 6155 5782 225 196 0 0 chrX 168790430 168790481 -8183659 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 1242 137 38 0 chrX 168790561 168790772 -8183368 - L1PB4 LINE L1 -367 5789 5571 5735 128 15 17 chrX 168790786 168791722 -8182418 - L1MA1 LINE L1 0 6302 5369 2393 60 0 26 chrX 168792073 168792375 -8181765 - AluY SINE Alu -17 294 1 1166 338 43 16 chrX 168793046 168793558 -8180582 - MER115 DNA AcHobo -12 681 156 2010 138 0 3 chrX 168793926 168794223 -8179917 + AluSx SINE Alu 1 296 -16 2474 59 0 31 chrX 168794274 168794595 -8179545 + AluY SINE Alu 1 311 0 200 336 82 27 chrX 168795035 168795181 -8178959 + MIR SINE MIR 36 189 -73 692 271 20 8 chrX 168795984 168796239 -8177901 - L1MDa LINE L1 -3156 4409 4152 2430 202 14 47 chrX 168796239 168796734 -8177406 - MLT2B3 LTR ERVL -4 550 72 295 57 0 0 chrX 168796833 168796868 -8177272 + U6 snRNA snRNA 1 35 -72 538 70 0 0 chrX 168796872 168796943 -8177197 - MLT2B3 LTR ERVL -483 71 1 1973 252 51 30 chrX 168796944 168798270 -8175870 - L1MDa LINE L1 -3420 4145 2789 515 248 15 7 chrX 168798300 168798437 -8175703 + LTR40a LTR ERVL 1 138 -381 1876 189 152 126 chrX 168798471 168798588 -8175552 - MLT1E2 LTR MaLR 0 626 513 2092 126 32 54 chrX 168798588 168798960 -8175180 + THE1B LTR MaLR 1 364 0 1876 189 152 126 chrX 168798960 168799468 -8174672 - MLT1E2 LTR MaLR -113 513 13 1635 239 153 16 chrX 168799553 168800257 -8173883 - L1M4 LINE L1 -2711 3435 2635 307 333 0 35 chrX 168800313 168800427 -8173713 - L1MDa LINE L1 -5847 1718 1609 * 819 186 0 51 chrX 168800411 168800567 -8173573 - L1MDa LINE L1 -6376 1189 1042 234 394 108 35 chrX 168801270 168801853 -8172287 - L2 LINE L2 0 3272 2633 210 362 32 11 chrX 168804225 168804319 -8169821 - MER5A DNA MER1_type -93 96 1 1090 287 70 52 chrX 168804568 168805363 -8168777 + L2 LINE L2 2514 3312 -1 3380 207 19 20 chrX 168805453 168806333 -8167807 - L1M LINE L1 -743 5403 4543 1172 130 19 19 chrX 168806319 168806382 -8167758 + L1M3 LINE L1 5425 5487 -847 * 2095 123 16 10 chrX 168806382 168806692 -8167448 + AluSx SINE Alu 1 312 0 1172 130 19 19 chrX 168806692 168806835 -8167305 + L1M3 LINE L1 5486 5631 -703 * 4042 182 30 14 chrX 168806825 168807588 -8166552 + L1MA9 LINE L1 5178 6058 -254 1979 100 15 0 chrX 168807588 168807857 -8166283 + AluSx SINE Alu 33 305 -7 4042 182 30 14 chrX 168807857 168808040 -8166100 + L1MA9 LINE L1 6058 6237 -75 235 83 0 28 chrX 168808513 168808549 -8165591 + MARNA DNA Mariner 163 197 -389 1844 201 24 75 chrX 168809008 168809540 -8164600 + MLT1D LTR MaLR 1 505 0 21 36 0 0 chrX 168809705 168809733 -8164407 + AT_rich Low_complexity Low_complexity 1 28 0 320 232 11 74 chrX 168810025 168810120 -8164020 + MIR SINE MIR 101 189 -73 228 207 27 162 chrX 168810516 168810627 -8163513 - MLT1K LTR MaLR -108 480 385 474 319 25 0 chrX 168810629 168810786 -8163354 - MIR SINE MIR -94 168 8 297 282 16 73 chrX 168810881 168811005 -8163135 - MLT1K LTR MaLR -276 312 196 778 308 23 0 chrX 168811084 168811305 -8162835 + MIR SINE MIR 13 238 -24 2959 171 6 6 chrX 168812807 168813446 -8160694 - MER50 LTR ERV1 -23 711 1 238 118 0 0 chrX 168815143 168815177 -8158963 - MSTA-int LTR MaLR -1616 35 2 2557 129 49 7 chrX 168815178 168815589 -8158551 - MSTA LTR MaLR 0 428 1 1350 123 15 0 chrX 168815593 168815797 -8158343 - MLT2B1 LTR ERVL -311 209 3 538 319 123 74 chrX 168816433 168816692 -8157448 - HAL1 LINE L1 -1130 1377 1132 2300 97 0 0 chrX 168816692 168816992 -8157148 + AluSx SINE Alu 1 300 -12 538 319 123 74 chrX 168816992 168817701 -8156439 - HAL1 LINE L1 -1375 1132 362 3684 200 54 23 chrX 168817707 168817723 -8156417 - L1MB5 LINE L1 -8 6166 6152 1416 251 25 19 chrX 168817723 168818086 -8156054 - MLT1A1 LTR MaLR 0 365 1 3684 200 54 23 chrX 168818086 168819616 -8154524 - L1MB5 LINE L1 -22 6152 4572 1043 162 21 1 chrX 168819629 168819802 -8154338 + L1MC2 LINE L1 5440 5588 -756 1695 162 33 0 chrX 168819802 168820074 -8154066 + AluJb SINE Alu 1 281 -31 1043 162 21 1 chrX 168820074 168820102 -8154038 + L1MC2 LINE L1 5588 5614 -730 278 179 0 30 chrX 168820102 168820169 -8153971 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 3466 174 51 7 chrX 168820173 168820880 -8153260 + L1MC2 LINE L1 5603 6340 -4 284 250 73 52 chrX 168821280 168821376 -8152764 - MIR SINE MIR -86 122 25 330 238 0 0 chrX 168821523 168821586 -8152554 - MIR SINE MIR -37 225 163 337 300 59 46 chrX 168821981 168822284 -8151856 + HAL1b LINE L1 100 406 -942 34 79 0 0 chrX 168822594 168822670 -8151470 + AT_rich Low_complexity Low_complexity 1 76 0 248 387 134 0 chrX 168822819 168822938 -8151202 + L2 LINE L2 3134 3268 -4 568 203 148 28 chrX 168823865 168824047 -8150093 - LTR16C LTR ERVL -9 482 279 1628 151 37 95 chrX 168824086 168824547 -8149593 - MER31A LTR ERV1 -28 438 1 677 278 31 21 chrX 168824547 168824736 -8149404 - LTR16C LTR ERVL -220 271 81 463 16 0 0 chrX 168825531 168825592 -8148548 - L1PA2 LINE L1 -1 6154 6094 2020 225 38 61 chrX 168825874 168826500 -8147640 - LTR9 LTR ERV1 0 612 1 387 241 111 62 chrX 168826987 168827149 -8146991 - MER91A DNA MER1_type -26 170 1 21 0 0 0 chrX 169030081 169030102 -7944038 + AT_rich Low_complexity Low_complexity 1 21 0 2362 120 5 35 chrX 169031122 169031497 -7942643 - THE1B LTR MaLR 0 364 1 14017 129 109 8 chrX 169032332 169033712 -7940428 + L1PB1 LINE L1 2 1241 -5622 2253 117 0 0 chrX 169033712 169034010 -7940130 + AluSx SINE Alu 3 300 -12 14017 129 109 8 chrX 169034010 169035091 -7939049 + L1PB1 LINE L1 1241 2711 -4152 5657 119 11 21 chrX 169035072 169036041 -7938099 + L1PB1 LINE L1 5911 6867 0 * 183 129 0 0 chrX 169036088 169036119 -7938021 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1606 154 164 18 chrX 169036128 169036562 -7937578 + LTR54B LTR ERV1 1 497 -1 26 50 0 0 chrX 169036760 169036800 -7937340 + AT_rich Low_complexity Low_complexity 1 40 0 2225 95 0 0 chrX 169037268 169037552 -7936588 + AluSc SINE Alu 1 284 -25 1525 140 0 0 chrX 169037666 169037888 -7936252 - AluSg/x SINE Alu -4 308 87 2145 118 0 3 chrX 169037965 169038269 -7935871 - AluSq SINE Alu -10 303 1 26 74 0 0 chrX 169038357 169038411 -7935729 + AT_rich Low_complexity Low_complexity 1 54 0 1131 237 98 117 chrX 169039531 169040275 -7933865 - L2 LINE L2 0 3313 2593 2419 65 0 7 chrX 169040275 169040584 -7933556 + AluY SINE Alu 2 308 -3 1131 237 98 117 chrX 169040584 169040800 -7933340 - L2 LINE L2 -720 2593 2374 3858 130 71 46 chrX 169041007 169041771 -7932369 - LTR1 LTR ERV1 -2 783 1 225 0 0 0 chrX 169042839 169042864 -7931276 + (TG)n Simple_repeat Simple_repeat 2 26 0 2171 84 42 0 chrX 169043116 169043391 -7930749 + AluSx SINE Alu 1 290 -22 432 51 0 0 chrX 169043391 169043450 -7930690 + (CATA)n Simple_repeat Simple_repeat 2 60 0 31 44 0 0 chrX 169043464 169043509 -7930631 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chrX 169043784 169043805 -7930335 + AT_rich Low_complexity Low_complexity 1 21 0 1143 261 123 20 chrX 169044611 169044710 -7929430 + L1ME1 LINE L1 3850 3937 -2209 2366 74 0 0 chrX 169044710 169045033 -7929107 + AluY SINE Alu 1 311 0 1143 261 123 20 chrX 169045033 169045635 -7928505 + L1ME1 LINE L1 3937 4681 -1465 2987 251 29 23 chrX 169045716 169046620 -7927520 + L1ME1 LINE L1 5257 6165 -1 303 175 0 0 chrX 169046687 169046744 -7927396 + (CATA)n Simple_repeat Simple_repeat 2 58 0 333 47 0 0 chrX 169046745 169046788 -7927352 + (GA)n Simple_repeat Simple_repeat 2 44 0 229 156 0 0 chrX 169047396 169047441 -7926699 + LTR66 LTR ERVL 394 438 -172 23 33 0 0 chrX 169047547 169047577 -7926563 + AT_rich Low_complexity Low_complexity 1 30 0 2078 100 17 3 chrX 169047676 169047967 -7926173 + AluSx SINE Alu 1 295 -17 1184 91 11 0 chrX 169047985 169048160 -7925980 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 392 158 13 0 chrX 169048161 169048237 -7925903 + GA-rich Low_complexity Low_complexity 1 77 0 940 113 0 38 chrX 169048238 169048424 -7925716 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 198 0 0 0 chrX 169049065 169049087 -7925053 + (TAA)n Simple_repeat Simple_repeat 1 22 0 2145 121 0 0 chrX 169049185 169049483 -7924657 - AluSx SINE Alu -14 298 1 22 0 0 0 chrX 169050597 169050619 -7923521 + AT_rich Low_complexity Low_complexity 1 22 0 2453 91 3 0 chrX 169051566 169051896 -7922244 - THE1A LTR MaLR -24 331 1 7444 102 5 4 chrX 169051896 169052920 -7921220 - THE1A-int LTR MaLR 0 1580 556 1530 198 3 14 chrX 169052922 169053205 -7920935 - AluJb SINE Alu -32 280 1 323 219 10 0 chrX 169053243 169053339 -7920801 + (TG)n Simple_repeat Simple_repeat 2 98 0 2124 91 3 66 chrX 169053680 169053785 -7920355 + AluSp SINE Alu 1 111 -202 300 91 0 0 chrX 169053785 169053829 -7920311 + (TG)n Simple_repeat Simple_repeat 1 44 0 2124 91 3 66 chrX 169053829 169054041 -7920099 + AluSp SINE Alu 111 298 -15 21 0 0 0 chrX 169054539 169054560 -7919580 + AT_rich Low_complexity Low_complexity 1 21 0 230 286 18 18 chrX 169055960 169056072 -7918068 + (TA)n Simple_repeat Simple_repeat 2 113 0 2153 93 42 3 chrX 169056648 169056937 -7917203 + AluSg SINE Alu 11 310 0 221 169 15 31 chrX 169057676 169057741 -7916399 + T-rich Low_complexity Low_complexity 1 64 0 3272 91 9 2 chrX 169057890 169058352 -7915788 + L1PA10 LINE L1 5702 6166 -2 1532 143 10 45 chrX 169058357 169058671 -7915469 + L1MB8 LINE L1 5861 6163 -15 986 186 12 0 chrX 169059043 169059215 -7914925 + FAM SINE Alu 2 175 0 537 276 0 47 chrX 169059313 169059483 -7914657 + L2 LINE L2 2646 2807 -507 1123 237 24 14 chrX 169059490 169059785 -7914355 - MER58B DNA MER1_type 0 341 44 783 250 69 5 chrX 169059803 169060019 -7914121 + L2 LINE L2 2804 3033 -280 318 87 0 0 chrX 169060410 169060456 -7913684 + (CA)n Simple_repeat Simple_repeat 1 46 0 3578 109 57 0 chrX 169061157 169061681 -7912459 + MER41A LTR ERV1 1 554 0 3685 98 21 70 chrX 169061778 169062409 -7911731 + MER4A LTR ERV1 1 600 0 2164 102 7 0 chrX 169062534 169062839 -7911301 + AluSp SINE Alu 1 307 -6 24 53 0 0 chrX 169063118 169063156 -7910984 + AT_rich Low_complexity Low_complexity 1 38 0 4594 68 54 34 chrX 169063412 169063487 -7910653 + PABL_A LTR ERV1 1 73 -587 684 67 0 0 chrX 169063487 169063577 -7910563 + (TA)n Simple_repeat Simple_repeat 2 91 0 2267 84 0 17 chrX 169063577 169063876 -7910264 - AluSc SINE Alu -15 294 1 2479 64 0 40 chrX 169063884 169064210 -7909930 - AluSq SINE Alu 0 313 1 4594 68 54 34 chrX 169064210 169064771 -7909369 + PABL_A LTR ERV1 79 660 0 2344 75 7 16 chrX 169065530 169065835 -7908305 - AluSp SINE Alu -11 302 1 219 139 0 0 chrX 169066199 169066235 -7907905 + (TG)n Simple_repeat Simple_repeat 1 36 0 1112 295 86 26 chrX 169066292 169066783 -7907357 + MER34 LTR ERV1 5 524 -18 2141 93 4 4 chrX 169066809 169067089 -7907051 - AluSg SINE Alu -30 280 1 26 30 0 0 chrX 169067430 169067463 -7906677 + AT_rich Low_complexity Low_complexity 1 33 0 2158 110 0 7 chrX 169067501 169067801 -7906339 + AluSx SINE Alu 1 298 -14 2160 116 0 7 chrX 169068379 169068681 -7905459 + AluSg SINE Alu 1 300 -10 23 33 0 0 chrX 169068977 169069007 -7905133 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 169069393 169069415 -7904725 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chrX 169069461 169069489 -7904651 + (CA)n Simple_repeat Simple_repeat 2 29 0 30 59 0 0 chrX 169069511 169069562 -7904578 + AT_rich Low_complexity Low_complexity 1 51 0 2231 114 7 0 chrX 169069562 169069869 -7904271 - AluSp SINE Alu -2 311 3 217 67 0 0 chrX 169070041 169070071 -7904069 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 2238 106 0 0 chrX 169070071 169070355 -7903785 - AluSq SINE Alu -29 284 1 1249 77 0 0 chrX 169070383 169070551 -7903589 + L1PA5 LINE L1 5987 6154 0 625 253 32 7 chrX 169071199 169071353 -7902787 - L2 LINE L2 0 3313 3156 470 259 60 88 chrX 169071359 169071639 -7902501 + MER102b DNA MER1_type 1 271 -1157 2139 122 7 0 chrX 169071639 169071935 -7902205 - AluSp SINE Alu -15 298 1 470 259 60 88 chrX 169071935 169072005 -7902135 + MER102b DNA MER1_type 271 341 0 682 324 124 26 chrX 169072083 169072708 -7901432 - L2 LINE L2 -247 3066 2358 330 333 47 0 chrX 169072708 169072837 -7901303 - L2 LINE L2 -1082 2232 2098 2089 116 0 0 chrX 169073253 169073537 -7900603 - AluSx SINE Alu -20 292 9 2266 108 10 0 chrX 169073918 169074224 -7899916 + AluSq SINE Alu 1 309 -4 1585 79 0 0 chrX 169074268 169074481 -7899659 + AluSc SINE Alu 93 305 0 2328 97 3 3 chrX 169074748 169075056 -7899084 + AluSx SINE Alu 5 312 0 2379 87 0 0 chrX 169075742 169076051 -7898089 + AluSg1 SINE Alu 1 309 0 25 75 0 0 chrX 169076497 169076550 -7897590 + AT_rich Low_complexity Low_complexity 1 53 0 202 147 53 53 chrX 169076776 169076793 -7897347 + (TTAA)n Simple_repeat Simple_repeat 2 18 -58 1937 145 7 3 chrX 169076793 169077082 -7897058 + AluJb SINE Alu 1 290 -22 202 147 53 53 chrX 169077082 169077139 -7897001 + (TTAA)n Simple_repeat Simple_repeat 17 76 0 2721 39 0 0 chrX 169077159 169077468 -7896672 + AluY SINE Alu 1 309 -2 2005 117 7 3 chrX 169078750 169079040 -7895100 - AluSq SINE Alu -17 296 6 294 403 0 0 chrX 169079088 169079227 -7894913 - MIR3 SINE MIR -6 202 64 26 0 0 0 chrX 169079283 169079309 -7894831 + AT_rich Low_complexity Low_complexity 1 26 0 1719 173 3 7 chrX 169079312 169079601 -7894539 + AluJo SINE Alu 1 288 -24 180 77 0 0 chrX 169079605 169079631 -7894509 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1950 221 69 41 chrX 169080235 169080774 -7893366 + MLT2B3 LTR ERVL 1 554 0 1796 103 92 4 chrX 169081091 169081376 -7892764 + AluSx SINE Alu 1 308 0 2336 50 3 3 chrX 169084143 169084451 -7889689 + AluY SINE Alu 1 308 0 388 288 76 0 chrX 169084479 169084597 -7889543 + MIR3 SINE MIR 57 183 -25 24 32 0 0 chrX 169084682 169084713 -7889427 + AT_rich Low_complexity Low_complexity 1 31 0 248 125 0 0 chrX 169084948 169084980 -7889160 + (T)n Simple_repeat Simple_repeat 1 32 0 1032 162 139 32 chrX 169085323 169085632 -7888508 + MER4A LTR ERV1 1 342 -322 523 128 248 8 chrX 169085695 169085812 -7888328 + MER4C LTR ERV1 300 444 -21 2982 144 29 108 chrX 169086263 169086816 -7887324 + LTR8 LTR ERV1 1 481 -210 2028 100 50 11 chrX 169086816 169087097 -7887043 - AluSx SINE Alu -20 292 1 2982 144 29 108 chrX 169087097 169087293 -7886847 + LTR8 LTR ERV1 481 691 0 1789 72 0 0 chrX 169088302 169088537 -7885603 - MER4E LTR ERV1 0 766 532 1633 72 5 5 chrX 169088538 169088745 -7885395 - AluSp SINE Alu -106 207 1 3269 121 55 51 chrX 169088824 169089428 -7884712 - MER4B LTR ERV1 0 610 5 3230 50 2 71 chrX 169090282 169090763 -7883377 + LTR7 LTR ERV1 1 448 -2 14976 106 37 9 chrX 169090765 169093626 -7880514 + HERVH LTR ERV1 1 2987 -4726 796 151 20 0 chrX 169093620 169093766 -7880374 + HERVH LTR ERV1 3140 3288 -4425 * 3121 117 4 6 chrX 169093758 169094261 -7879879 + HERVH LTR ERV1 3492 3993 -3720 3935 149 11 1 chrX 169094263 169094919 -7879221 + HERVH LTR ERV1 4488 5149 -2564 1362 110 18 9 chrX 169094920 169095138 -7879002 + HERVH LTR ERV1 5600 5819 -1894 2232 78 67 16 chrX 169095138 169095509 -7878631 + HERVH LTR ERV1 7324 7713 0 3396 62 0 7 chrX 169095509 169095960 -7878180 + LTR7 LTR ERV1 1 448 -2 24 0 0 0 chrX 169096078 169096102 -7878038 + AT_rich Low_complexity Low_complexity 1 24 0 2358 97 3 7 chrX 169097253 169097563 -7876577 + AluSp SINE Alu 1 309 -4 22 0 0 0 chrX 169097774 169097796 -7876344 + AT_rich Low_complexity Low_complexity 1 22 0 213 208 13 52 chrX 169098120 169098141 -7875999 + (TA)n Simple_repeat Simple_repeat 2 22 -53 1273 193 83 31 chrX 169098141 169098468 -7875672 - MER2 DNA MER2_type 0 344 1 213 208 13 52 chrX 169098468 169098523 -7875617 + (TA)n Simple_repeat Simple_repeat 22 75 0 1569 181 34 7 chrX 169098772 169099064 -7875076 - AluJo SINE Alu -12 300 1 2023 116 47 44 chrX 169099323 169099686 -7874454 + THE1B LTR MaLR 1 364 0 405 58 0 0 chrX 169099720 169099772 -7874368 + (CA)n Simple_repeat Simple_repeat 2 53 0 26 30 0 0 chrX 169100745 169100778 -7873362 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chrX 169101992 169102023 -7872117 + AT_rich Low_complexity Low_complexity 1 31 0 387 0 0 0 chrX 169102023 169102066 -7872074 + (CA)n Simple_repeat Simple_repeat 2 44 0 2110 150 66 17 chrX 169102987 169103394 -7870746 - MSTA LTR MaLR 0 428 2 498 143 22 11 chrX 169103396 169103487 -7870653 + MER4A LTR ERV1 1 92 -572 1367 162 17 70 chrX 169103489 169103853 -7870287 + MER4A LTR ERV1 262 664 0 5635 68 14 14 chrX 169104014 169104780 -7869360 + MER4E LTR ERV1 1 766 0 2463 92 0 0 chrX 169106378 169106682 -7867458 + AluSq SINE Alu 2 305 -8 189 0 0 0 chrX 169107252 169107273 -7866867 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 204 125 57 11 chrX 169108206 169108294 -7865846 + (TA)n Simple_repeat Simple_repeat 1 92 0 3799 93 50 32 chrX 169108539 169108808 -7865332 + LTR66 LTR ERVL 1 264 -346 2098 113 13 3 chrX 169108808 169109110 -7865030 + AluSp SINE Alu 1 305 -8 3799 93 50 32 chrX 169109110 169109439 -7864701 + LTR66 LTR ERVL 264 610 0 218 167 37 0 chrX 169109903 169109957 -7864183 + T-rich Low_complexity Low_complexity 1 56 0 1103 215 56 34 chrX 169110055 169110378 -7863762 - MER33 DNA MER1_type -8 316 1 242 338 12 0 chrX 169110825 169110905 -7863235 + MER93a LTR ERV1 1 81 -321 * 659 259 152 9 chrX 169110900 169111224 -7862916 + MER57A LTR ERV1 60 399 -4 2101 99 34 0 chrX 169111641 169111934 -7862206 - AluSp SINE Alu -10 303 1 2015 115 3 10 chrX 169112074 169112391 -7861749 - AluSg SINE Alu 0 310 1 615 306 5 24 chrX 169114042 169114248 -7859892 + MIR SINE MIR 13 214 -48 333 140 0 0 chrX 169114431 169114488 -7859652 + (TG)n Simple_repeat Simple_repeat 2 58 0 263 233 0 0 chrX 169114893 169114953 -7859187 - MER69 DNA AcHobo 0 2526 2467 243 158 49 85 chrX 169114977 169115059 -7859081 - MER69 DNA AcHobo -2381 145 67 2755 171 38 6 chrX 169115084 169115609 -7858531 + MER34 LTR ERV1 1 542 0 1493 226 83 37 chrX 169115846 169116329 -7857811 - MLT1D LTR MaLR 0 505 1 399 250 0 21 chrX 169116440 169116536 -7857604 + MER82 DNA MER2_type 1 94 -559 330 338 45 25 chrX 169116556 169116757 -7857383 - MIR SINE MIR -57 205 1 775 263 29 10 chrX 169116788 169116993 -7857147 + MER82 DNA MER2_type 444 652 -1 643 158 88 0 chrX 169117027 169117141 -7856999 + MLT1D LTR MaLR 360 483 -22 543 31 0 0 chrX 169118529 169118594 -7855546 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 194 466 0 8 chrX 169118748 169118881 -7855259 - MIR SINE MIR -61 147 16 180 365 16 0 chrX 169118898 169118961 -7855179 - L2 LINE L2 -4 3268 3205 410 330 27 0 chrX 169119032 169119144 -7854996 + L2 LINE L2 3156 3270 -2 271 274 86 26 chrX 169120321 169120438 -7853702 + MIR SINE MIR 73 196 -66 321 383 10 31 chrX 169120760 169120953 -7853187 + MER5A DNA MER1_type 1 189 0 13623 172 36 49 chrX 169122818 169125096 -7849044 + L1MA2 LINE L1 11 2318 -5405 2158 109 0 23 chrX 169125096 169125400 -7848740 + AluSg SINE Alu 2 298 -12 13623 172 36 49 chrX 169125400 169126214 -7847926 + L1MA2 LINE L1 2318 3142 -4581 1950 147 0 14 chrX 169126214 169126507 -7847633 + AluSx SINE Alu 1 289 -23 13623 172 36 49 chrX 169126507 169127360 -7846780 + L1MA2 LINE L1 3142 4005 -3718 2088 127 0 0 chrX 169127360 169127644 -7846496 + AluSx SINE Alu 1 284 -28 13623 172 36 49 chrX 169127644 169129087 -7845053 + L1MA2 LINE L1 4005 5466 -2257 1945 145 3 0 chrX 169129087 169129377 -7844763 - AluSx SINE Alu -20 292 2 13623 172 36 49 chrX 169129377 169131060 -7843080 + L1MA2 LINE L1 5466 7273 -450 889 228 0 72 chrX 169131540 169131671 -7842469 + L1ME2 LINE L1 5905 6009 -155 369 0 0 0 chrX 169131671 169131712 -7842428 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 889 228 0 72 chrX 169131712 169131843 -7842297 + L1ME2 LINE L1 6009 6148 -16 3284 283 26 6 chrX 169131918 169132826 -7841314 + L1PA15 LINE L1 1043 1969 -4818 6655 43 12 0 chrX 169132851 169133667 -7840473 - L1PA7 LINE L1 0 6154 5329 6037 182 25 7 chrX 169133666 169134384 -7839756 + L1PA15 LINE L1 4594 5298 -1518 * 180 97 0 0 chrX 169134384 169134415 -7839725 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 6037 182 25 7 chrX 169134415 169135873 -7838267 + L1PA15 LINE L1 5298 6813 -3 263 243 43 93 chrX 169136770 169136910 -7837230 + MIR SINE MIR 74 206 -56 22 0 0 0 chrX 169137547 169137569 -7836571 + AT_rich Low_complexity Low_complexity 1 22 0 808 225 17 12 chrX 169137789 169137962 -7836178 - L1PB4 LINE L1 -3 6153 5980 5840 84 48 5 chrX 169139494 169140637 -7833503 + L1PA13 LINE L1 4980 6161 -2 2549 65 3 0 chrX 169141350 169141660 -7832480 - AluSp SINE Alu -1 312 2 313 364 0 8 chrX 169142125 169142246 -7831894 + MIR SINE MIR 34 153 -109 2250 89 7 0 chrX 169142334 169142625 -7831515 + AluSg SINE Alu 4 296 -14 413 236 9 0 chrX 169144304 169144410 -7829730 - L1MB7 LINE L1 -12 6172 6066 202 339 34 42 chrX 169145424 169145542 -7828598 - L2 LINE L2 -5 3308 3192 656 233 14 20 chrX 169145591 169145737 -7828403 - MIR SINE MIR -114 148 4 2132 108 3 3 chrX 169146125 169146432 -7827708 + AluSq SINE Alu 1 307 -6 22 56 0 0 chrX 169146464 169146500 -7827640 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chrX 169146529 169146568 -7827572 + AT_rich Low_complexity Low_complexity 1 39 0 1405 65 43 61 chrX 169146722 169146952 -7827188 + MER4E LTR ERV1 1 226 -540 4435 67 12 0 chrX 169147052 169147632 -7826508 + MER4E LTR ERV1 180 766 0 759 272 30 5 chrX 169150086 169150288 -7823852 + MER63A DNA MER1_type 1 207 -3 2162 106 3 0 chrX 169150395 169150688 -7823452 - AluSx SINE Alu -18 294 1 185 312 43 43 chrX 169151081 169151174 -7822966 + L2 LINE L2 3171 3263 -50 26 0 0 0 chrX 169152209 169152235 -7821905 + AT_rich Low_complexity Low_complexity 1 26 0 2189 99 3 13 chrX 169153407 169153711 -7820429 + AluSg1 SINE Alu 1 301 -8 32 0 0 0 chrX 169154106 169154138 -7820002 + AT_rich Low_complexity Low_complexity 1 32 0 28 0 0 0 chrX 169154165 169154193 -7819947 + AT_rich Low_complexity Low_complexity 1 28 0 2208 112 3 0 chrX 169154362 169154656 -7819484 - AluSg SINE Alu -15 295 1 1102 146 9 9 chrX 169155161 169155374 -7818766 + L1MA4A LINE L1 6090 6302 -1 8771 190 40 10 chrX 169155579 169157216 -7816924 + L1MA2 LINE L1 21 1706 -5859 450 219 0 0 chrX 169157225 169157307 -7816833 + L1MA2 LINE L1 1828 1909 -5656 2177 143 34 14 chrX 169157335 169157691 -7816449 - THE1B LTR MaLR -1 363 1 283 75 0 0 chrX 169157691 169157731 -7816409 - THE1B-int LTR MaLR 0 1580 1541 * 4294 127 16 0 chrX 169157723 169158347 -7815793 - THE1B-int LTR MaLR -597 983 350 * 6000 99 20 16 chrX 169158336 169159314 -7814826 + L1PA8 LINE L1 5199 6182 0 2742 71 11 0 chrX 169159316 169159680 -7814460 - THE1B-int LTR MaLR -1212 368 1 2081 146 30 25 chrX 169159680 169160042 -7814098 - THE1B LTR MaLR 0 364 1 9410 174 20 12 chrX 169160042 169163239 -7810901 + L1MA2 LINE L1 1983 5205 -2360 1291 187 39 4 chrX 169163240 169163470 -7810670 + AluJb SINE Alu 2 239 -73 7898 158 15 6 chrX 169163487 169165993 -7808147 + L1MA2 LINE L1 5194 7723 0 2209 104 0 0 chrX 169166085 169166372 -7807768 + AluSc SINE Alu 1 287 -22 970 265 109 3 chrX 169167646 169167959 -7806181 - L2 LINE L2 -413 2901 2556 21 0 0 0 chrX 169168330 169168351 -7805789 + AT_rich Low_complexity Low_complexity 1 21 0 1143 184 40 0 chrX 169169925 169170153 -7803987 - MER58B DNA MER1_type -15 326 90 5916 106 12 2 chrX 169170153 169171018 -7803122 - L1PA13 LINE L1 -25 6138 5266 * 25492 150 20 15 chrX 169171017 169176577 -7797563 - L1P3 LINE L1 -807 5990 339 2063 249 16 0 chrX 169176581 169177068 -7797072 - L1P LINE L1 -3101 3045 2551 1752 190 30 3 chrX 169177056 169177356 -7796784 - L1P3 LINE L1 -6478 309 2 * 374 366 6 22 chrX 169177692 169177875 -7796265 + MARNA DNA Mariner 9 188 -398 13480 138 12 72 chrX 169178412 169178638 -7795502 + Tigger1 DNA MER2_type 1 239 -2179 1704 160 3 28 chrX 169178638 169178926 -7795214 - AluSx SINE Alu -27 285 5 13480 138 12 72 chrX 169178926 169178980 -7795160 + Tigger1 DNA MER2_type 239 295 -2123 1270 104 10 0 chrX 169178980 169179181 -7794959 - L1MA2 LINE L1 0 6304 6102 13480 138 12 72 chrX 169179181 169181297 -7792843 + Tigger1 DNA MER2_type 295 2235 -183 11275 35 2 1 chrX 169181297 169183429 -7790711 - L1PA4 LINE L1 0 6155 4022 13480 138 12 72 chrX 169183429 169183602 -7790538 + Tigger1 DNA MER2_type 2235 2417 -1 318 364 52 13 chrX 169184402 169184556 -7789584 + MIR3 SINE MIR 35 194 -14 4005 164 20 0 chrX 169184927 169185616 -7788524 + L1PA16 LINE L1 5462 6164 -2 2165 102 3 7 chrX 169186337 169186640 -7787500 + AluSx SINE Alu 1 302 -10 18994 176 21 17 chrX 169187610 169191165 -7782975 + L1M1 LINE L1 14 3581 -3984 2651 224 51 46 chrX 169391166 169392113 -7582027 + L1M3b LINE L1 1142 2083 -4299 2470 63 7 0 chrX 169392113 169392415 -7581725 + AluSp SINE Alu 1 304 -9 2651 224 51 46 chrX 169392415 169393449 -7580691 + L1M3b LINE L1 2083 3186 -3196 12742 127 21 15 chrX 169393451 169395266 -7578874 + Tigger1 DNA MER2_type 1 1896 -522 2379 71 0 3 chrX 169395266 169395561 -7578579 + AluY SINE Alu 1 294 -17 12742 127 21 15 chrX 169395561 169395960 -7578180 + Tigger1 DNA MER2_type 1896 2291 -127 1231 174 4 42 chrX 169395957 169396072 -7578068 - MER54B LTR ERVL -566 227 124 * 2456 97 3 0 chrX 169396072 169396383 -7577757 + AluSx SINE Alu 1 312 0 1231 174 4 42 chrX 169396383 169396503 -7577637 - MER54B LTR ERVL -669 124 1 2845 241 46 19 chrX 169396504 169398315 -7575825 + L1ME2 LINE L1 4295 6155 -9 407 330 58 35 chrX 169398401 169398857 -7575283 + MLT1K LTR MaLR 12 565 -23 24 32 0 0 chrX 169399063 169399094 -7575046 + AT_rich Low_complexity Low_complexity 1 31 0 622 251 38 90 chrX 169399161 169399428 -7574712 + MER77 LTR ERV1 62 314 -291 1170 125 0 0 chrX 169399428 169399596 -7574544 + AluSg/x SINE Alu 127 294 -18 2422 63 3 13 chrX 169399598 169399900 -7574240 + AluSq SINE Alu 1 299 -14 782 218 124 23 chrX 169399902 169400192 -7573948 + MER77 LTR ERV1 309 599 -6 805 173 11 50 chrX 169400413 169400592 -7573548 + MER69 DNA AcHobo 1 172 -1054 371 196 120 0 chrX 169400595 169400687 -7573453 + MER69 DNA AcHobo 2424 2526 0 351 0 0 0 chrX 169401185 169401224 -7572916 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 396 0 0 0 chrX 169401223 169401267 -7572873 + (TA)n Simple_repeat Simple_repeat 1 44 0 1761 143 14 7 chrX 169401291 169401571 -7572569 - AluSx SINE Alu -30 282 1 258 56 0 0 chrX 169401803 169401839 -7572301 + (CA)n Simple_repeat Simple_repeat 2 37 0 233 75 25 0 chrX 169402201 169402241 -7571899 + (TC)n Simple_repeat Simple_repeat 1 41 0 355 347 70 26 chrX 169403023 169403409 -7570731 - MLT1K LTR MaLR -7 581 179 505 339 55 14 chrX 169403450 169403742 -7570398 - MER102b DNA MER1_type -9 332 29 319 273 0 50 chrX 169404299 169404438 -7569702 - MLT1K LTR MaLR -11 577 446 344 313 42 0 chrX 169404581 169404677 -7569463 - MLT1K LTR MaLR -348 240 141 1305 25 0 6 chrX 169404815 169405010 -7569130 + L1PA2 LINE L1 5998 6155 0 766 69 35 0 chrX 169406607 169406723 -7567417 + (TTCC)n Simple_repeat Simple_repeat 4 123 0 614 178 12 35 chrX 169406835 169407004 -7567136 + CT-rich Low_complexity Low_complexity 3 167 0 337 333 67 33 chrX 169407197 169407377 -7566763 - MER5A DNA MER1_type -3 186 1 1001 228 64 10 chrX 169407550 169407862 -7566278 - MER113 DNA MER1_type? -158 363 35 767 254 11 58 chrX 169408342 169408425 -7565715 + MER34 LTR ERV1 1 86 -456 4354 144 50 0 chrX 169408425 169409111 -7565029 + MER72 LTR ERV1 1 720 -2 767 254 11 58 chrX 169409111 169409302 -7564838 + MER34 LTR ERV1 86 262 -280 39094 66 8 3 chrX 169409316 169415435 -7558705 - L1PA5 LINE L1 -5 6149 1 2410 153 57 0 chrX 169415481 169415886 -7558254 - MSTA LTR MaLR 0 428 1 285 247 82 14 chrX 169415904 169416050 -7558090 + MER34 LTR ERV1 339 494 -48 329 278 0 46 chrX 169416081 169416189 -7557951 - MIR SINE MIR -7 255 153 223 235 296 20 chrX 169416194 169416292 -7557848 - MIR SINE MIR -11 251 127 585 261 72 7 chrX 169416337 169416475 -7557665 - MIR SINE MIR -115 147 1 270 81 0 0 chrX 169417098 169417135 -7557005 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 529 223 36 16 chrX 169419056 169419249 -7554891 - L1MC5 LINE L1 -26 7935 7739 1799 94 4 0 chrX 169419741 169419975 -7554165 - AluSp SINE Alu -78 235 1 1244 163 9 4 chrX 169420301 169420337 -7553803 - MSTD LTR MaLR -167 229 195 2323 101 7 0 chrX 169420337 169420644 -7553496 - AluSg SINE Alu -1 309 1 1244 163 9 4 chrX 169420644 169420834 -7553306 - MSTD LTR MaLR -201 195 2 214 241 0 37 chrX 169420915 169420969 -7553171 + (TATG)n Simple_repeat Simple_repeat 1 52 0 186 43 0 0 chrX 169421261 169421284 -7552856 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1732 121 4 0 chrX 169421286 169421525 -7552615 - AluSq SINE Alu -30 283 44 204 97 0 0 chrX 169421526 169421557 -7552583 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 1455 145 0 0 chrX 169421897 169422125 -7552015 + L1PB4 LINE L1 5924 6151 -5 2293 115 0 0 chrX 169422276 169422589 -7551551 - AluSq SINE Alu 0 313 1 217 340 0 21 chrX 169422614 169422708 -7551432 + MIR3 SINE MIR 90 181 -27 2119 115 0 32 chrX 169423245 169423558 -7550582 + AluSc SINE Alu 1 303 -6 1102 252 97 42 chrX 169424766 169425242 -7548898 + LTR26 LTR ERV1 102 603 0 206 156 22 0 chrX 169426783 169426828 -7547312 + GA-rich Low_complexity Low_complexity 1 46 0 218 222 0 19 chrX 169427933 169427987 -7546153 - MIR SINE MIR -51 211 159 4253 157 48 5 chrX 169427996 169428779 -7545361 - LTR1B LTR ERV1 -9 817 1 1102 237 102 52 chrX 169428782 169429338 -7544802 - MER34C LTR ERV1 -1 584 1 220 315 9 63 chrX 169429355 169429466 -7544674 - MIR SINE MIR -64 144 40 1244 218 17 54 chrX 169429467 169429816 -7544324 + MLT1D LTR MaLR 5 340 -165 1486 206 61 3 chrX 169429817 169430176 -7543964 - MLT1D LTR MaLR 0 505 126 726 184 40 7 chrX 169430172 169430324 -7543816 + MLT1D LTR MaLR 349 505 0 * 351 280 127 17 chrX 169431638 169431756 -7542384 - MIR SINE MIR -62 146 16 3055 241 85 44 chrX 169432125 169432263 -7541877 - L1MC4 LINE L1 0 8042 7911 222 62 0 0 chrX 169432263 169432295 -7541845 + (TA)n Simple_repeat Simple_repeat 2 33 0 3055 241 85 44 chrX 169432295 169433574 -7540566 - L1MC4 LINE L1 -131 7911 6413 424 298 17 10 chrX 169434354 169434493 -7539647 - MIR3 SINE MIR -5 203 63 269 250 25 25 chrX 169434493 169434573 -7539567 + L3 LINE CR1 1488 1567 -10 653 281 104 37 chrX 169435470 169435797 -7538343 - L2 LINE L2 -5 3267 2919 337 303 0 41 chrX 169435879 169436001 -7538139 + L2 LINE L2 3191 3307 -6 540 228 9 128 chrX 169436038 169436257 -7537883 - MIR SINE MIR -28 234 42 1504 325 48 44 chrX 169436370 169437194 -7536946 - L2 LINE L2 -624 2690 1863 594 268 43 40 chrX 169438067 169438440 -7535700 - L1MEc LINE L1 -4134 2262 1889 1183 303 122 23 chrX 169438539 169439275 -7534865 - L2 LINE L2 -1216 2098 1290 1081 184 28 56 chrX 169439431 169439699 -7534441 + MIR SINE MIR 2 262 0 332 318 0 0 chrX 169440084 169440172 -7533968 - L3 LINE CR1 -3 1574 1487 2339 94 3 3 chrX 169441479 169441778 -7532362 - AluSq SINE Alu -14 299 1 455 178 8 68 chrX 169442144 169442262 -7531878 - L1MC4 LINE L1 0 8042 7932 2027 210 8 36 chrX 169442328 169442761 -7531379 - L1MC4 LINE L1 -133 7909 7490 2509 158 70 0 chrX 169442761 169443159 -7530981 + MSTB LTR MaLR 1 426 0 2027 210 8 36 chrX 169443159 169443230 -7530910 - L1MC4 LINE L1 -552 7490 7419 1943 208 35 51 chrX 169443226 169443712 -7530428 - L1MC4 LINE L1 -890 7152 6675 * 267 31 0 0 chrX 169443727 169443759 -7530381 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 1649 179 16 77 chrX 169443759 169444138 -7530002 - MLT1A1 LTR MaLR -5 360 5 504 48 0 0 chrX 169444140 169444203 -7529937 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 2651 188 33 48 chrX 169444236 169444907 -7529233 - L1MC4a LINE L1 -1210 6598 5938 268 178 0 0 chrX 169446598 169446643 -7527497 - L2 LINE L2 0 3313 3269 339 341 45 69 chrX 169446911 169447157 -7526983 - L2 LINE L2 -5 3267 3028 248 274 0 0 chrX 169447169 169447220 -7526920 + L2 LINE L2 3189 3239 -33 285 336 71 9 chrX 169447297 169447410 -7526730 + L2 LINE L2 2945 3064 -208 1514 303 128 23 chrX 169447495 169448264 -7525876 + L2 LINE L2 2201 3050 -263 1881 146 70 50 chrX 169448286 169448643 -7525497 - MLT1A1 LTR MaLR -1 364 1 195 242 76 15 chrX 169449162 169449228 -7524912 + L2 LINE L2 2567 2636 -678 542 300 44 74 chrX 169449273 169449835 -7524305 + L2 LINE L2 2733 3269 -3 697 301 23 12 chrX 169450071 169450327 -7523813 - MIR SINE MIR -3 259 1 970 234 144 16 chrX 169452380 169452816 -7521324 + L1ME4a LINE L1 5582 6073 -48 2607 315 53 55 chrX 169453602 169458331 -7515809 + PABL_B-int LTR ERV1 596 5130 -1855 400 316 7 7 chrX 169459958 169460110 -7514030 + PABL_B-int LTR ERV1 8023 8174 -452 310 219 20 0 chrX 169460383 169460460 -7513680 + PABL_B-int LTR ERV1 6459 6529 0 455 243 65 49 chrX 169460882 169461072 -7513068 + MIR SINE MIR 56 248 -14 217 260 144 29 chrX 169461669 169461773 -7512367 - L2 LINE L2 -2 3311 3196 384 22 0 0 chrX 169462077 169462122 -7512018 + (CAA)n Simple_repeat Simple_repeat 1 45 0 660 246 41 99 chrX 169462701 169463021 -7511119 + L2 LINE L2 2779 3083 -189 191 217 17 33 chrX 169463026 169463086 -7511054 - L2 LINE L2 -367 2905 2847 1662 128 67 73 chrX 169463090 169463433 -7510707 - THE1C LTR MaLR -34 341 1 805 297 71 32 chrX 169463433 169463897 -7510243 - L2 LINE L2 -481 2833 2352 325 274 12 0 chrX 169463992 169464076 -7510064 - MIR SINE MIR 0 262 178 30 0 0 0 chrX 169464573 169464603 -7509537 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chrX 169465008 169465028 -7509112 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 233 301 120 71 chrX 169466171 169466354 -7507786 + L2 LINE L2 3073 3264 -8 185 296 25 25 chrX 169466749 169466830 -7507310 + L2 LINE L2 3004 3084 -188 180 0 0 0 chrX 169467520 169467540 -7506600 + (TTTTC)n Simple_repeat Simple_repeat 2 21 0 485 103 0 13 chrX 169467542 169467620 -7506520 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1987 141 3 13 chrX 169467633 169467946 -7506194 - AluSx SINE Alu -2 310 1 2402 144 58 26 chrX 169468448 169468865 -7505275 - MSTB1 LTR MaLR -2 430 1 204 40 0 0 chrX 169469166 169469191 -7504949 + (CAA)n Simple_repeat Simple_repeat 2 26 0 195 167 0 0 chrX 169469817 169469859 -7504281 + (TG)n Simple_repeat Simple_repeat 2 43 0 646 287 15 31 chrX 169471458 169471653 -7502487 + MIR3 SINE MIR 17 208 0 21 0 0 0 chrX 169472717 169472738 -7501402 + AT_rich Low_complexity Low_complexity 1 21 0 292 311 111 33 chrX 169472988 169473168 -7500972 - L2 LINE L2 -6 3266 3073 339 113 0 0 chrX 169474423 169474476 -7499664 + (CAG)n Simple_repeat Simple_repeat 1 53 0 2635 221 59 48 chrX 169476770 169476945 -7497195 + MER82 DNA MER2_type 1 173 -480 2187 115 3 0 chrX 169476945 169477269 -7496871 + AluSx SINE Alu 1 312 0 2635 221 59 48 chrX 169477269 169477739 -7496401 + MER82 DNA MER2_type 173 653 0 30 0 0 0 chrX 169478123 169478153 -7495987 + AT_rich Low_complexity Low_complexity 1 30 0 702 264 15 25 chrX 169479610 169479811 -7494329 - MIR SINE MIR -2 260 62 21 0 0 0 chrX 169480592 169480613 -7493527 + AT_rich Low_complexity Low_complexity 1 21 0 246 260 52 0 chrX 169480638 169480715 -7493425 + (CATA)n Simple_repeat Simple_repeat 4 84 0 242 187 99 99 chrX 169480973 169481064 -7493076 - L3 LINE CR1 -2 1575 1485 320 310 51 107 chrX 169481122 169481665 -7492475 - L2 LINE L2 0 3272 2731 305 288 88 56 chrX 169481705 169481920 -7492220 - L3 LINE CR1 -173 1404 1183 789 244 104 80 chrX 169482191 169482640 -7491500 - MLT1J LTR MaLR -6 495 15 2331 101 0 0 chrX 169482815 169483112 -7491028 + AluSx SINE Alu 2 298 -14 326 271 71 21 chrX 169484132 169484272 -7489868 + MLT1J1 LTR MaLR 70 216 -230 263 268 0 0 chrX 169485736 169485807 -7488333 + T-rich Low_complexity Low_complexity 1 71 0 833 206 38 0 chrX 169486395 169486579 -7487561 - MER20 DNA MER1_type 0 219 29 2414 221 61 111 chrX 169486657 169486881 -7487259 - MER97c DNA MER1_type? -1 1089 855 540 83 24 0 chrX 169486881 169486965 -7487175 + L1MA2 LINE L1 6219 6304 0 2414 221 61 111 chrX 169486965 169487682 -7486458 - MER97c DNA MER1_type? -235 855 219 1186 176 38 0 chrX 169487682 169487892 -7486248 + MER20B DNA MER1_type 2 219 0 2414 221 61 111 chrX 169487892 169488089 -7486051 - MER97c DNA MER1_type? -871 219 14 2031 131 24 0 chrX 169488821 169489119 -7485021 - AluSx SINE Alu -7 305 1 927 280 66 3 chrX 169489187 169489587 -7484553 + MLT1K LTR MaLR 128 586 -2 272 371 38 9 chrX 169490103 169490208 -7483932 + L2 LINE L2 3157 3264 -8 701 158 98 37 chrX 169490237 169490401 -7483739 + MER3 DNA MER1_type 19 192 -17 207 345 0 0 chrX 169490552 169490607 -7483533 + L2 LINE L2 3001 3055 -217 180 179 26 0 chrX 169490764 169490803 -7483337 - L2 LINE L2 -1 3312 3273 396 136 30 0 chrX 169490817 169490883 -7483257 + MLT1B LTR MaLR 323 390 0 213 308 60 43 chrX 169490923 169491040 -7483100 - L2 LINE L2 -178 3094 2976 2185 86 7 0 chrX 169491125 169491455 -7482685 + AluSc SINE Alu 1 332 0 434 349 128 29 chrX 169491458 169491739 -7482401 - L2 LINE L2 -429 2885 2577 305 250 0 0 chrX 169491744 169491800 -7482340 + L2 LINE L2 3203 3258 -14 23 33 0 0 chrX 169497365 169497395 -7476745 + AT_rich Low_complexity Low_complexity 1 30 0 344 268 21 21 chrX 169498350 169498406 -7475734 - L1MA10 LINE L1 0 6334 6279 4547 226 75 44 chrX 169498406 169498855 -7475285 - L1ME1 LINE L1 -47 6119 5686 1912 125 58 7 chrX 169498855 169499150 -7474990 + AluSx SINE Alu 1 310 -2 4547 226 75 44 chrX 169499150 169501128 -7473012 - L1ME1 LINE L1 -480 5686 3595 3824 246 56 17 chrX 169501130 169502405 -7471735 - L1ME1 LINE L1 -2695 3451 2128 389 55 0 0 chrX 169502413 169502468 -7471672 - L1MA3 LINE L1 0 6305 6251 1101 113 5 27 chrX 169502477 169502663 -7471477 - L1PB1 LINE L1 0 6151 5970 1281 43 0 0 chrX 169502663 169502827 -7471313 + L1P LINE L1 4991 5154 -992 1127 146 19 15 chrX 169503979 169504184 -7469956 - AluSc SINE Alu -9 300 95 9471 169 20 5 chrX 169504286 169504429 -7469711 - L1PB1 LINE L1 -218 6649 6510 414 0 0 0 chrX 169504429 169504475 -7469665 + (TA)n Simple_repeat Simple_repeat 1 46 0 9471 169 20 5 chrX 169504475 169506967 -7467173 - L1PB1 LINE L1 -357 6510 3982 448 161 0 23 chrX 169506960 169507047 -7467093 - L1PB1 LINE L1 -6730 133 49 * 2197 73 35 3 chrX 169507061 169507376 -7466764 - L1MA1 LINE L1 -42 6260 5936 3782 103 22 7 chrX 169507387 169507968 -7466172 - L1MA1 LINE L1 -10 6292 5703 819 285 46 50 chrX 169507968 169508072 -7466068 - L1M2 LINE L1 -4154 2242 2139 1931 177 24 0 chrX 169508072 169508411 -7465729 + MER7A DNA MER2_type 1 345 -1 819 285 46 50 chrX 169508411 169508913 -7465227 - L1M2 LINE L1 -4257 2139 1651 29 47 0 0 chrX 169509290 169509333 -7464807 + AT_rich Low_complexity Low_complexity 1 43 0 669 257 27 9 chrX 169512574 169512796 -7461344 + L1MC4 LINE L1 7688 7913 -129 310 207 52 67 chrX 169512844 169512979 -7461161 + L1MC4 LINE L1 7902 8034 -8 1577 144 16 105 chrX 169513640 169514022 -7460118 - MER7A DNA MER2_type 0 346 1 1471 274 103 42 chrX 169514034 169514428 -7459712 - L2 LINE L2 -4 3309 2941 2330 86 7 0 chrX 169514428 169514729 -7459411 - AluSc SINE Alu -6 303 1 1471 274 103 42 chrX 169514729 169515181 -7458959 - L2 LINE L2 -372 2941 2413 806 205 5 43 chrX 169515181 169515391 -7458749 - MER69 DNA AcHobo 0 2526 2325 2099 262 92 57 chrX 169515431 169515685 -7458455 - HAL1 LINE L1 -1431 1076 832 3047 129 25 2 chrX 169515685 169516159 -7457981 + MER31A LTR ERV1 1 485 0 2099 262 92 57 chrX 169516159 169516931 -7457209 - HAL1 LINE L1 -1675 832 14 254 279 0 0 chrX 169517123 169517184 -7456956 - L2 LINE L2 -2 3311 3251 28 79 0 0 chrX 169517202 169517265 -7456875 + AT_rich Low_complexity Low_complexity 1 63 0 446 388 51 41 chrX 169517818 169518388 -7455752 - L2 LINE L2 -8 3264 2687 606 224 148 9 chrX 169518392 169518615 -7455525 + L1MC5 LINE L1 7154 7407 -554 254 370 0 30 chrX 169521038 169521138 -7453002 - L2 LINE L2 -18 3254 3158 2833 10 0 0 chrX 169521348 169521656 -7452484 + AluYa5 SINE Alu 1 308 -3 605 307 67 13 chrX 169521668 169521906 -7452234 - MIR SINE MIR -11 251 1 298 307 21 79 chrX 169521906 169522184 -7451956 - L2 LINE L2 -680 2634 2373 1536 275 83 47 chrX 169522689 169524286 -7449854 - L1MEc LINE L1 -2455 3760 2144 419 286 38 8 chrX 169524600 169524733 -7449407 + MER117 DNA MER1_type 47 183 -14 437 267 40 0 chrX 169527171 169527272 -7446868 + MIR3 SINE MIR 73 177 -31 246 32 0 0 chrX 169527652 169527683 -7446457 + (TA)n Simple_repeat Simple_repeat 2 32 0 481 326 14 0 chrX 169527785 169527929 -7446211 + MIR SINE MIR 12 157 -105 31429 112 15 67 chrX 169527936 169530072 -7444068 + L1P3 LINE L1 12 2257 -3915 2153 86 0 7 chrX 169530072 169530352 -7443788 - AluY SINE Alu -12 299 22 31429 112 15 67 chrX 169530352 169534042 -7440098 + L1P3 LINE L1 2257 5525 -647 * 34069 86 4 9 chrX 169534021 169540170 -7433970 + L1PA6 LINE L1 11 6147 -3 210 91 0 0 chrX 169540170 169540203 -7433937 + (CA)n Simple_repeat Simple_repeat 2 34 0 5511 46 4 0 chrX 169540281 169540956 -7433184 + L1PA7 LINE L1 5476 6153 -1 329 330 46 0 chrX 169540956 169541065 -7433075 + MIR SINE MIR 147 260 -2 266 368 9 35 chrX 169541136 169541250 -7432890 + L2 LINE L2 3150 3260 -12 918 255 5 0 chrX 169541497 169541697 -7432443 + MIR SINE MIR 44 244 -18 279 79 0 0 chrX 169541714 169541752 -7432388 + (TAG)n Simple_repeat Simple_repeat 3 40 0 706 137 0 0 chrX 169542047 169542164 -7431976 - L1MA10 LINE L1 -14 6320 6204 1887 163 0 3 chrX 169542996 169543285 -7430855 + AluJb SINE Alu 1 288 -24 347 300 117 38 chrX 169545511 169545751 -7428389 + MIR SINE MIR 3 261 -1 25 0 0 0 chrX 169545840 169545865 -7428275 + AT_rich Low_complexity Low_complexity 1 25 0 1934 149 0 37 chrX 169546449 169546772 -7427368 - AluSx SINE Alu -1 311 1 207 302 43 79 chrX 169547118 169547257 -7426883 + MIR3 SINE MIR 73 206 -2 222 37 0 0 chrX 169547358 169547385 -7426755 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 288 158 0 0 chrX 169550003 169550060 -7424080 + GA-rich Low_complexity Low_complexity 2 58 0 467 163 0 0 chrX 169550846 169550926 -7423214 - MER116 DNA Mariner 0 80 1 572 247 91 16 chrX 169550955 169551141 -7422999 + MIR SINE MIR 7 206 -56 1057 176 44 13 chrX 169551152 169551379 -7422761 + L1MB7 LINE L1 5951 6184 0 252 0 0 0 chrX 169551485 169551513 -7422627 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 331 257 20 20 chrX 169552968 169553069 -7421071 + L1MC4 LINE L1 6603 6703 -1339 * 339 248 9 38 chrX 169553041 169553146 -7420994 - L1MC4 LINE L1 -1339 6703 6602 197 326 54 31 chrX 169554278 169554407 -7419733 - L2 LINE L2 -11 3302 3171 2315 92 3 0 chrX 169554599 169554902 -7419238 - AluSp SINE Alu -9 304 1 283 277 58 89 chrX 169555894 169556118 -7418022 + L1ME LINE L1 276 492 -5578 687 260 26 38 chrX 169556352 169556698 -7417442 + L1ME LINE L1 553 894 -5176 9600 223 66 15 chrX 169556711 169558164 -7415976 + L1PA13 LINE L1 1 1378 -5419 297 0 0 0 chrX 169558164 169558197 -7415943 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 9600 223 66 15 chrX 169558197 169560083 -7414057 + L1PA13 LINE L1 1378 3521 -3276 5588 176 31 26 chrX 169560087 169560608 -7413532 - L1MEc LINE L1 -2120 4095 3579 210 37 0 0 chrX 169560608 169560635 -7413505 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5588 176 31 26 chrX 169560635 169561321 -7412819 - L1MEc LINE L1 -2636 3579 2881 6826 107 9 5 chrX 169561325 169562350 -7411790 + L1MA2 LINE L1 5276 6304 0 22 0 0 0 chrX 169562350 169562372 -7411768 + AT_rich Low_complexity Low_complexity 1 22 0 2251 96 3 17 chrX 169562375 169562744 -7411396 + AluSp SINE Alu 1 313 0 420 242 36 99 chrX 169562781 169563257 -7410883 + L1M4 LINE L1 1344 1881 -4763 1073 282 48 19 chrX 169563304 169563819 -7410321 + L1M4 LINE L1 2062 2591 -4234 423 216 79 36 chrX 169563818 169563957 -7410183 - L1M4 LINE L1 -4107 2289 2145 * 835 196 78 81 chrX 169563973 169564370 -7409770 + L1M4 LINE L1 2269 2664 -3551 1263 297 21 27 chrX 169564396 169565052 -7409088 + L1M4 LINE L1 3265 3916 -2299 * 2320 137 5 0 chrX 169565046 169565440 -7408700 + L1P LINE L1 2805 3200 -2946 593 296 22 4 chrX 169565438 169565664 -7408476 + L1PBa LINE L1 129 358 -6505 * 476 235 0 0 chrX 169565781 169565866 -7408274 - FLAM_A SINE Alu -57 85 1 523 240 40 23 chrX 169566552 169566727 -7407413 - L1MC4 LINE L1 0 8042 7865 1644 160 3 10 chrX 169567078 169567366 -7406774 + AluSx SINE Alu 24 309 -3 520 218 82 54 chrX 169567898 169568045 -7406095 - MIR SINE MIR -14 248 98 2090 215 56 52 chrX 169568204 169568255 -7405885 - MLT1E2 LTR MaLR -2 624 575 671 232 0 0 chrX 169568255 169568380 -7405760 - FLAM_A SINE Alu -5 128 4 2090 215 56 52 chrX 169568380 169568947 -7405193 - MLT1E2 LTR MaLR -51 575 1 2384 227 33 4 chrX 169569325 169569810 -7404330 - MLT1E2 LTR MaLR -115 511 13 245 255 9 104 chrX 169569965 169570071 -7404069 - L2 LINE L2 -647 2667 2572 33 43 0 0 chrX 169571858 169571905 -7402235 + AT_rich Low_complexity Low_complexity 1 47 0 1328 129 74 0 chrX 169571907 169572163 -7401977 - L1MA7 LINE L1 -7 6284 6010 1686 291 80 52 chrX 169572679 169573491 -7400649 + L3 LINE CR1 405 1239 -338 192 280 60 0 chrX 169573555 169573605 -7400535 + L2 LINE L2 3241 3293 -20 544 254 32 60 chrX 169573621 169573806 -7400334 - L2 LINE L2 -4 3309 3130 * 1130 233 29 8 chrX 169573792 169574037 -7400103 + MIR SINE MIR 13 262 0 685 303 28 5 chrX 169574396 169574607 -7399533 + MIR SINE MIR 9 224 -38 532 277 136 5 chrX 169574601 169574785 -7399355 + MIR SINE MIR 50 257 -5 * 321 293 140 20 chrX 169574801 169574951 -7399189 + L3 LINE CR1 1387 1554 -23 269 286 0 0 chrX 169575481 169575544 -7398596 + MIR SINE MIR 84 146 -116 6598 65 4 7 chrX 169576025 169577054 -7397086 - L1PA8A LINE L1 -28 6103 5076 247 239 34 34 chrX 169578279 169578367 -7395773 - L3 LINE CR1 -1067 510 423 5191 138 5 12 chrX 169579034 169580044 -7394096 - L1PB4 LINE L1 -5 6151 5151 518 113 0 0 chrX 169580044 169580124 -7394016 - MADE1 DNA Mariner 0 80 1 5191 138 5 12 chrX 169580124 169580504 -7393636 - L1PB4 LINE L1 -1005 5151 4770 378 115 0 0 chrX 169581022 169581083 -7393057 + (CA)n Simple_repeat Simple_repeat 2 62 0 467 236 0 9 chrX 169583987 169584093 -7390047 + MIR SINE MIR 56 160 -102 635 263 41 100 chrX 169584652 169584991 -7389149 + MLT1J LTR MaLR 156 474 -37 3123 200 77 39 chrX 169585525 169586130 -7388010 - L1MD2 LINE L1 -23 6336 5694 2350 77 3 0 chrX 169586130 169586427 -7387713 - AluY SINE Alu -11 300 3 3123 200 77 39 chrX 169586427 169586590 -7387550 - L1MD2 LINE L1 -665 5694 5539 988 177 6 11 chrX 169586617 169586792 -7387348 - L1MDa LINE L1 -6363 177 4 2199 115 0 0 chrX 169588982 169589287 -7384853 - AluSx SINE Alu -7 305 1 2385 109 0 0 chrX 169593069 169593373 -7380767 + AluSx SINE Alu 1 304 -8 746 272 55 45 chrX 169593501 169593905 -7380235 - MER20B DNA MER1_type -36 747 340 2688 256 49 38 chrX 169593956 169595076 -7379064 - L2 LINE L2 -8 3305 2180 269 170 20 80 chrX 169595484 169595584 -7378556 + L2 LINE L2 792 885 -2429 573 263 26 13 chrX 169595658 169595810 -7378330 - MER20B DNA MER1_type -623 160 7 205 268 0 0 chrX 169596496 169596537 -7377603 - L2 LINE L2 -16 3297 3257 23 0 0 0 chrX 169600024 169600047 -7374093 + AT_rich Low_complexity Low_complexity 1 23 0 202 120 0 40 chrX 169600052 169600102 -7374038 + (TAAAAA)n Simple_repeat Simple_repeat 1 48 0 406 224 9 9 chrX 169600725 169600832 -7373308 + MIR SINE MIR 149 255 -7 359 257 52 43 chrX 169600940 169601219 -7372921 + MLT1I LTR MaLR 63 359 -50 1168 235 33 18 chrX 169601456 169601788 -7372352 - MER113 DNA MER1_type? -94 427 91 347 397 0 0 chrX 169603097 169603243 -7370897 - L2 LINE L2 -4 3309 3164 1464 104 186 73 chrX 169603289 169603616 -7370524 - THE1B LTR MaLR 0 364 1 10529 106 9 61 chrX 169603616 169605283 -7368857 - THE1B-int LTR MaLR 0 1580 1 1343 144 61 43 chrX 169605283 169605611 -7368529 - THE1C LTR MaLR 0 375 1 399 162 54 0 chrX 169605649 169605723 -7368417 - L2 LINE L2 -239 3074 2997 329 284 176 62 chrX 169605724 169605900 -7368240 + L2 LINE L2 2817 3012 -301 878 351 71 15 chrX 169605901 169606644 -7367496 - L2 LINE L2 -786 2528 1744 714 230 32 37 chrX 169608279 169608496 -7365644 - MIR SINE MIR -14 248 33 2377 75 3 28 chrX 169609149 169609468 -7364672 + AluY SINE Alu 1 311 0 429 300 17 1 chrX 169609675 169609825 -7364315 + MIR SINE MIR 47 197 -62 503 270 93 72 chrX 169609844 169610280 -7363860 + MLT1H LTR MaLR 21 497 -52 2620 47 0 0 chrX 169610298 169610598 -7363542 - AluY SINE Alu -11 300 1 2497 63 0 0 chrX 169611431 169611731 -7362409 + AluY SINE Alu 1 300 -11 2335 99 0 0 chrX 169611823 169612136 -7362004 - AluSq SINE Alu 0 313 1 769 362 114 22 chrX 169612597 169613058 -7361082 + L2 LINE L2 1553 1970 -1344 2313 82 0 3 chrX 169613058 169613350 -7360790 - AluY SINE Alu -20 291 1 769 362 114 22 chrX 169613350 169613736 -7360404 + L2 LINE L2 1970 2478 -836 1983 268 34 17 chrX 169613897 169614234 -7359906 + L1MB7 LINE L1 4269 4599 -1547 180 77 0 0 chrX 169614234 169614260 -7359880 + (TG)n Simple_repeat Simple_repeat 2 27 0 1983 268 34 17 chrX 169614260 169614683 -7359457 + L1MB7 LINE L1 4599 5042 -1104 1121 222 9 0 chrX 169614684 169614896 -7359244 + MER58A DNA MER1_type 11 224 0 21 0 0 0 chrX 169614939 169614960 -7359180 + AT_rich Low_complexity Low_complexity 1 21 0 4616 185 9 12 chrX 169615050 169615968 -7358172 + L1MB7 LINE L1 5257 6171 -13 804 211 12 147 chrX 169616089 169616416 -7357724 + L1ME LINE L1 5420 5702 -460 192 302 179 0 chrX 169616490 169616596 -7357544 + L2 LINE L2 2631 2755 -559 382 262 74 8 chrX 169616608 169616730 -7357410 + MER5B DNA MER1_type 1 130 -48 247 326 189 48 chrX 169616807 169617098 -7357042 + L2 LINE L2 2941 3272 0 3493 223 20 22 chrX 169621404 169621948 -7352192 - L1ME2 LINE L1 -11 6222 5679 1565 170 18 107 chrX 169621948 169622349 -7351791 - MLT1A1 LTR MaLR 0 365 1 3493 223 20 22 chrX 169622349 169622701 -7351439 - L1ME2 LINE L1 -554 5679 5328 2170 128 27 24 chrX 169622712 169623086 -7351054 + THE1C LTR MaLR 1 375 0 7929 110 11 5 chrX 169623086 169624597 -7349543 + THE1C-int LTR MaLR 1 1580 0 2202 144 16 16 chrX 169624597 169624972 -7349168 + THE1C LTR MaLR 1 375 0 3126 276 52 26 chrX 169624972 169627069 -7347071 - L1ME2 LINE L1 -894 5321 3138 5843 103 23 2 chrX 169627084 169628723 -7345417 - L1PA16 LINE L1 -3 6163 4509 1765 166 13 7 chrX 169628724 169629025 -7345115 - MLT1A1 LTR MaLR -58 307 5 1367 243 9 9 chrX 169629029 169629448 -7344692 - L1ME2 LINE L1 -3481 2734 2316 * 1685 299 102 37 chrX 169629440 169631080 -7343060 - L1ME2 LINE L1 -4612 1784 39 2100 266 83 20 chrX 169631111 169631977 -7342163 - L1MC4 LINE L1 -15 8027 7107 1164 228 46 23 chrX 169632146 169632493 -7341647 - L1ME2 LINE L1 -111 6053 5699 1108 261 104 28 chrX 169632504 169632822 -7341318 + MLT1E LTR MaLR 9 350 -243 14218 168 86 4 chrX 169632824 169633607 -7340533 - L1 LINE L1 -3274 4291 3574 186 43 0 0 chrX 169633607 169633630 -7340510 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 14218 168 86 4 chrX 169633630 169633691 -7340449 - L1 LINE L1 -3991 3574 3519 1652 183 7 29 chrX 169633691 169633997 -7340143 - AluJb SINE Alu -13 299 1 14218 168 86 4 chrX 169633997 169635553 -7338587 - L1 LINE L1 -4046 3519 1558 222 37 0 0 chrX 169635553 169635580 -7338560 + (TC)n Simple_repeat Simple_repeat 2 28 0 14218 168 86 4 chrX 169635580 169636373 -7337767 - L1 LINE L1 -6007 1558 832 630 179 29 21 chrX 169636374 169636514 -7337626 - L1 LINE L1 -7424 141 1 326 235 152 0 chrX 169636508 169636556 -7337584 - L1ME2 LINE L1 -821 5325 5286 * 876 103 0 0 chrX 169636556 169636712 -7337428 + (TA)n Simple_repeat Simple_repeat 2 157 0 326 235 152 0 chrX 169636712 169636795 -7337345 - L1ME2 LINE L1 -860 5286 5174 10031 156 4 7 chrX 169636802 169637329 -7336811 - L1PA14 LINE L1 -6 7593 7066 2092 128 35 41 chrX 169637329 169637695 -7336445 + THE1B LTR MaLR 1 364 0 10031 156 4 7 chrX 169637695 169639768 -7334372 - L1PA14 LINE L1 -533 7066 5016 2263 141 13 16 chrX 169639768 169640144 -7333996 - THE1C LTR MaLR 0 375 1 7054 226 46 101 chrX 169640144 169643475 -7330665 - L1PA14 LINE L1 -4429 3155 1 542 240 129 7 chrX 169643478 169643691 -7330449 - L1ME2 LINE L1 -979 5167 4932 885 164 75 6 chrX 169643696 169643855 -7330285 - AluJb SINE Alu -6 306 137 1466 239 80 16 chrX 169643855 169644407 -7329733 - L1ME2 LINE L1 -1226 4920 4334 382 212 52 101 chrX 169645198 169645392 -7328748 + MIR SINE MIR 36 216 -46 3627 66 2 0 chrX 169645953 169646420 -7327720 + L1PA7 LINE L1 5679 6146 -8 25 31 0 0 chrX 169646575 169646607 -7327533 + AT_rich Low_complexity Low_complexity 1 32 0 200 302 19 0 chrX 169647537 169647590 -7326550 + L2 LINE L2 3208 3261 -11 706 306 93 30 chrX 169647648 169648528 -7325612 + L1ME3 LINE L1 5031 5952 -210 223 192 14 123 chrX 169650267 169650340 -7323800 - L3 LINE CR1 -2 1575 1511 188 86 29 0 chrX 169651744 169651779 -7322361 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 232 349 36 0 chrX 169651779 169651862 -7322278 - L2 LINE L2 -28 3244 3159 21 0 0 0 chrX 169652327 169652348 -7321792 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chrX 169654066 169654093 -7320047 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chrX 169654263 169654312 -7319828 + AT_rich Low_complexity Low_complexity 1 49 0 203 271 103 37 chrX 169654754 169654861 -7319279 + L2 LINE L2 2479 2592 -722 613 221 15 23 chrX 169655117 169655291 -7318849 - MER104 DNA Tc2 -3 177 1 364 328 15 15 chrX 169655329 169655463 -7318677 + L2 LINE L2 3180 3313 0 22 0 0 0 chrX 169655544 169655566 -7318574 + AT_rich Low_complexity Low_complexity 1 22 0 301 336 32 36 chrX 169655998 169656218 -7317922 - L1MC4a LINE L1 -1911 5897 5679 30011 118 14 57 chrX 169656316 169662738 -7311402 - L1PA7 LINE L1 -4 6150 13 379 287 107 40 chrX 169663045 169663474 -7310666 - L1MC4a LINE L1 -1118 5028 4571 410 361 54 11 chrX 169663764 169664044 -7310096 - L1MC4a LINE L1 -1950 4196 3905 18062 158 37 38 chrX 169664057 169668234 -7305906 - L1MA2 LINE L1 0 7723 3563 429 20 0 0 chrX 169668234 169668284 -7305856 + (TG)n Simple_repeat Simple_repeat 1 50 0 18062 158 37 38 chrX 169668284 169671825 -7302315 - L1MA2 LINE L1 -4160 3563 18 289 266 77 70 chrX 169671846 169672617 -7301523 - L1MC4a LINE L1 -2693 3453 2678 2366 181 55 7 chrX 169672670 169673191 -7300949 - Tigger7 DNA MER2_type -1 2486 1 24 32 0 0 chrX 169673703 169673734 -7300406 + AT_rich Low_complexity Low_complexity 1 31 0 1315 268 64 15 chrX 169673776 169674183 -7299957 - L2 LINE L2 -1069 2245 1819 410 271 24 53 chrX 169674232 169674402 -7299738 + L1M4 LINE L1 67 231 -6311 189 0 0 0 chrX 169674936 169674957 -7299183 + (CA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chrX 169674957 169674979 -7299161 + (A)n Simple_repeat Simple_repeat 1 22 0 2179 142 13 51 chrX 169675113 169675461 -7298679 - MST-int LTR MaLR -39 1612 1279 2212 110 0 0 chrX 169675461 169675751 -7298389 + AluSx SINE Alu 1 290 -22 2179 142 13 51 chrX 169675751 169675797 -7298343 - MST-int LTR MaLR -372 1279 1233 528 198 60 0 chrX 169675797 169675913 -7298227 - MLT2B2 LTR ERVL -390 125 3 237 271 57 0 chrX 169675914 169675984 -7298156 + L1M4 LINE L1 1983 2056 -4590 1794 183 0 7 chrX 169675986 169676292 -7297848 + AluJb SINE Alu 1 304 -8 734 283 47 29 chrX 169676292 169676568 -7297572 + LTR40a LTR ERVL 239 519 0 1348 281 34 3 chrX 169677397 169677781 -7296359 - L2 LINE L2 -1863 1451 1056 281 230 333 0 chrX 169677770 169677857 -7296283 + L2 LINE L2 3193 3308 -5 * 376 275 108 45 chrX 169677857 169678144 -7295996 - HAL1 LINE L1 -1056 1451 1147 1940 170 3 0 chrX 169679945 169680274 -7293866 + L1MB1 LINE L1 5816 6145 -23 575 303 48 5 chrX 169682113 169682301 -7291839 - MIR SINE MIR -65 197 2 638 256 35 17 chrX 169683897 169684069 -7290071 + MIR SINE MIR 73 247 -15 482 0 17 0 chrX 169685463 169685521 -7288619 + (TG)n Simple_repeat Simple_repeat 1 59 0 21 0 0 0 chrX 169688132 169688153 -7285987 + AT_rich Low_complexity Low_complexity 1 21 0 717 157 0 8 chrX 169689232 169689353 -7284787 + FLAM_C SINE Alu 5 124 -9 24 32 0 0 chrX 169689353 169689384 -7284756 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chrX 169690098 169690120 -7284020 + AT_rich Low_complexity Low_complexity 1 22 0 5929 120 51 8 chrX 169690253 169691638 -7282502 - L1PA13 LINE L1 -5 6158 4706 670 254 106 16 chrX 169694562 169694751 -7279389 - MER63A DNA MER1_type -2 208 3 270 0 0 0 chrX 169694774 169694804 -7279336 + (T)n Simple_repeat Simple_repeat 1 30 0 253 327 195 13 chrX 169695076 169695235 -7278905 + MIR3 SINE MIR 20 207 -1 23 86 0 0 chrX 169695936 169695994 -7278146 + AT_rich Low_complexity Low_complexity 1 58 0 706 285 5 32 chrX 169696031 169696054 -7278086 - LTR33 LTR ERVL -1 520 498 1655 202 19 27 chrX 169696054 169696210 -7277930 + MLT1A1 LTR MaLR 1 157 -208 2308 82 0 38 chrX 169696210 169696527 -7277613 + AluSx SINE Alu 1 305 -7 1655 202 19 27 chrX 169696527 169696736 -7277404 + MLT1A1 LTR MaLR 157 363 -2 706 285 5 32 chrX 169696736 169696933 -7277207 - LTR33 LTR ERVL -23 498 306 819 307 65 7 chrX 169697049 169697326 -7276814 - LTR33 LTR ERVL -228 293 1 847 351 69 9 chrX 169697387 169697809 -7276331 - L2 LINE L2 0 3313 2867 1083 325 94 6 chrX 169697893 169698363 -7275777 - MLT1H1 LTR MaLR 0 555 45 1263 308 21 25 chrX 169698380 169698857 -7275283 - L2 LINE L2 -492 2822 2348 2444 114 14 3 chrX 169698929 169699298 -7274842 - THE1C LTR MaLR 0 375 3 577 96 0 11 chrX 169699300 169699394 -7274746 - THE1C-int LTR MaLR 0 1580 1488 448 86 0 111 chrX 169699394 169699475 -7274665 - THE1C LTR MaLR -303 72 1 949 281 4 12 chrX 169699498 169699747 -7274393 - MIR SINE MIR -13 249 3 259 91 23 0 chrX 169700045 169700089 -7274051 - L1MB7 LINE L1 -7 6177 6133 * 341 269 0 15 chrX 169700076 169700206 -7273934 + L1M4 LINE L1 5124 5251 -895 2246 116 3 45 chrX 169700206 169700560 -7273580 - MER1B DNA MER1_type 0 339 1 744 126 8 0 chrX 169700560 169700679 -7273461 + L1M4 LINE L1 5244 5363 -783 6538 207 36 58 chrX 169700727 169702586 -7271554 - L1M4 LINE L1 -1136 5010 3193 519 334 81 32 chrX 169702749 169703120 -7271020 - MLT1J LTR MaLR -104 407 19 21 71 0 0 chrX 169703213 169703255 -7270885 + AT_rich Low_complexity Low_complexity 1 42 0 360 353 13 27 chrX 169703452 169703602 -7270538 - MER5A DNA MER1_type -3 186 39 250 283 65 51 chrX 169703481 169703619 -7270521 + MER5A DNA MER1_type 44 183 -6 * 5526 116 25 3 chrX 169704273 169705731 -7268409 - L1PA15 LINE L1 -7 6158 4666 252 259 0 0 chrX 169705754 169705812 -7268328 - L1ME LINE L1 -456 5665 5608 361 350 35 0 chrX 169705815 169706015 -7268125 + L1ME4a LINE L1 5617 5823 -298 * 431 48 2 0 chrX 169706013 169706076 -7268064 - L1PA7 LINE L1 -441 5713 5650 3471 44 16 0 chrX 169706076 169706508 -7267632 + L1PA7 LINE L1 5715 6153 -1 222 91 0 0 chrX 169706655 169706688 -7267452 + (CA)n Simple_repeat Simple_repeat 2 34 0 364 190 74 41 chrX 169706718 169706839 -7267301 + L1ME4a LINE L1 5950 6074 -47 24 77 0 0 chrX 169706898 169706950 -7267190 + AT_rich Low_complexity Low_complexity 1 52 0 196 262 0 0 chrX 169707720 169707762 -7266378 - MIR SINE MIR -6 256 215 592 263 63 33 chrX 169707975 169708245 -7265895 - HAL1 LINE L1 0 2507 2230 586 270 40 9 chrX 169708278 169708500 -7265640 - HAL1 LINE L1 -340 2167 1939 2320 224 49 8 chrX 169708556 169709163 -7264977 - HAL1 LINE L1 -760 1747 1116 2129 296 112 24 chrX 169709204 169710117 -7264023 - HAL1 LINE L1 -1513 994 2 398 315 92 61 chrX 169710240 169710535 -7263605 + L2 LINE L2 3009 3312 -1 412 85 0 0 chrX 169711638 169711697 -7262443 - L1MD3 LINE L1 -10 7985 7927 1458 212 40 71 chrX 169711699 169712098 -7262042 + MLT1B LTR MaLR 3 394 -2 1862 202 118 44 chrX 169712098 169712599 -7261541 - L1MD3 LINE L1 -67 7928 7391 411 243 10 19 chrX 169712605 169712708 -7261432 - MLT1F1 LTR MaLR -465 102 1 500 221 87 0 chrX 169712715 169712842 -7261298 - L1MD3 LINE L1 -728 7267 7130 17417 168 57 13 chrX 169712843 169720211 -7253929 - L1MA2 LINE L1 -7 7716 12 1635 186 81 16 chrX 169720214 169720586 -7253554 - L1MD3 LINE L1 -831 7164 6769 429 70 0 0 chrX 169720586 169720643 -7253497 + (TG)n Simple_repeat Simple_repeat 2 58 0 1252 218 52 23 chrX 169720643 169720986 -7253154 - L1MC4a LINE L1 -1195 6613 6261 248 355 8 8 chrX 169720999 169721120 -7253020 - MER5A DNA MER1_type -68 121 1 183 306 0 47 chrX 169723931 169724016 -7250124 - MIR SINE MIR -18 244 164 555 330 47 50 chrX 169724214 169724511 -7249629 + L2 LINE L2 254 549 -2765 226 200 13 53 chrX 169725701 169725776 -7248364 + (TATATG)n Simple_repeat Simple_repeat 4 75 0 254 29 29 0 chrX 169725776 169725811 -7248329 + (GA)n Simple_repeat Simple_repeat 2 37 0 3349 208 62 14 chrX 169725892 169726612 -7247528 + MER21B LTR ERV1 98 852 -11 1183 313 46 32 chrX 169726690 169727499 -7246641 + HAL1b LINE L1 89 908 -440 555 331 58 22 chrX 169727635 169727998 -7246142 + L1M4 LINE L1 2148 2523 -3623 434 293 100 48 chrX 169728091 169728361 -7245779 + L1M4 LINE L1 2857 3140 -3006 287 107 41 4 chrX 169728418 169728472 -7245668 - MST-int LTR MaLR -13 1722 1586 412 185 87 0 chrX 169728476 169728568 -7245572 - MLT2B1 LTR ERVL -418 102 3 1735 198 29 9 chrX 169728622 169728970 -7245170 - MST-int LTR MaLR -64 1587 1233 579 164 60 0 chrX 169728970 169729086 -7245054 - MLT2B2 LTR ERVL -390 125 3 613 223 8 0 chrX 169729161 169729282 -7244858 + FLAM_C SINE Alu 2 123 -10 1091 223 17 0 chrX 169729293 169729526 -7244614 + AluJo SINE Alu 3 239 -73 234 239 28 0 chrX 169729537 169729608 -7244532 + (TAAA)n Simple_repeat Simple_repeat 1 73 0 1660 249 92 15 chrX 169729656 169729735 -7244405 + L1M4c LINE L1 3208 3280 -4285 1747 204 0 3 chrX 169729735 169730048 -7244092 - AluJo SINE Alu 0 312 1 1660 249 92 15 chrX 169730048 169730877 -7243263 + L1M4c LINE L1 3280 4185 -3380 9350 177 10 24 chrX 169730881 169732565 -7241575 + L1M1 LINE L1 13 1673 -5892 * 9606 161 110 20 chrX 169732564 169733200 -7240940 + L1M1 LINE L1 4270 4847 -2874 378 0 0 0 chrX 169733200 169733242 -7240898 + (TAA)n Simple_repeat Simple_repeat 1 42 0 9606 161 110 20 chrX 169733242 169733408 -7240732 + L1M1 LINE L1 4847 4997 -2724 246 32 0 0 chrX 169733408 169733439 -7240701 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 9606 161 110 20 chrX 169733439 169735222 -7238918 + L1M1 LINE L1 4997 7105 -616 358 117 17 0 chrX 169735231 169735291 -7238849 + L1MA2 LINE L1 3926 3986 -2160 3400 114 67 20 chrX 169735301 169735897 -7238243 + L1MA2 LINE L1 5681 6304 0 201 88 0 70 chrX 169735942 169735999 -7238141 + (TTAAA)n Simple_repeat Simple_repeat 4 56 0 4139 234 62 58 chrX 169735999 169736503 -7237637 + L1MB7 LINE L1 2802 3303 -2881 339 34 356 0 chrX 169736503 169736562 -7237578 + MADE1 DNA Mariner 1 80 0 4139 234 62 58 chrX 169736562 169737016 -7237124 + L1MB7 LINE L1 3303 3754 -2430 536 42 14 0 chrX 169737016 169737087 -7237053 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 4139 234 62 58 chrX 169737087 169738614 -7235526 + L1MB7 LINE L1 3754 5325 -859 17598 89 4 1 chrX 169738614 169741892 -7232248 - L1PA7 LINE L1 0 6154 2872 4139 234 62 58 chrX 169741892 169742702 -7231438 + L1MB7 LINE L1 5325 6131 -53 249 73 49 0 chrX 169742705 169742746 -7231394 + L1PA11 LINE L1 6132 6174 0 228 191 0 0 chrX 169742743 169742785 -7231355 + L1MB7 LINE L1 6127 6168 -16 * 736 301 77 24 chrX 169742795 169743391 -7230749 + L1M4 LINE L1 3729 4353 -1793 363 181 0 0 chrX 169743585 169743657 -7230483 - L1MB2 LINE L1 -3 6168 6097 6142 102 22 2 chrX 169743689 169745008 -7229132 - L1PA16 LINE L1 -9 6157 4812 1749 250 138 18 chrX 169747616 169748324 -7225816 + L1MC4a LINE L1 6488 7280 -528 6686 50 24 3 chrX 169748802 169749909 -7224231 - L1PA8 LINE L1 -6 6166 5025 543 235 67 0 chrX 169749927 169750076 -7224064 - L1PBa LINE L1 -6546 317 159 * 5998 159 16 5 chrX 169750071 169752065 -7222075 + L1PB2 LINE L1 4140 6150 -1 1625 220 49 12 chrX 169752065 169752410 -7221730 + MLT1F LTR MaLR 154 511 -31 570 280 65 6 chrX 169752881 169753049 -7221091 + MIR SINE MIR 48 225 -37 461 262 62 13 chrX 169753951 169754176 -7219964 - L1ME4a LINE L1 -233 5888 5653 277 308 19 9 chrX 169754226 169754333 -7219807 + MLT1J LTR MaLR 108 215 -296 698 263 124 2 chrX 169754668 169754870 -7219270 + MIR SINE MIR 3 210 -52 225 244 167 0 chrX 169756011 169756089 -7218051 - L2 LINE L2 0 3272 3182 760 171 9 148 chrX 169757725 169757878 -7216262 + MER5A DNA MER1_type 1 117 -72 2642 160 14 0 chrX 169757878 169758321 -7215819 - L1PA16 LINE L1 -9 6157 5709 760 171 9 148 chrX 169758321 169758383 -7215757 + MER5A DNA MER1_type 117 186 -3 1083 319 28 39 chrX 169758606 169759220 -7214920 + L2 LINE L2 2714 3312 -1 229 217 22 0 chrX 169759222 169759268 -7214872 + GA-rich Low_complexity Low_complexity 3 49 0 4821 84 6 0 chrX 169759572 169760226 -7213914 - L1PA10 LINE L1 -1 6167 5510 403 66 0 0 chrX 169760227 169760288 -7213852 + AluSp/q SINE Alu 243 303 -10 992 95 0 0 chrX 169760288 169760425 -7213715 - L1PA10 LINE L1 -641 5527 5391 * 13849 127 6 24 chrX 169760424 169762429 -7211711 + L1P LINE L1 3080 5041 -1105 1864 119 14 38 chrX 169762429 169762745 -7211395 + AluSq SINE Alu 1 309 0 13849 127 6 24 chrX 169762745 169763047 -7211093 + L1P LINE L1 5041 5347 -799 819 133 0 0 chrX 169763043 169763171 -7210969 + L1PA15 LINE L1 3312 3439 -2707 * 21 36 0 0 chrX 169763374 169763402 -7210738 + AT_rich Low_complexity Low_complexity 1 28 0 7731 175 13 10 chrX 169763407 169765758 -7208382 - L1MB1 LINE L1 -1 6167 3808 3735 255 34 20 chrX 169765761 169766110 -7208030 - L1MB1 LINE L1 -2779 3367 3024 1500 197 48 22 chrX 169766110 169766466 -7207674 + MLT1A1 LTR MaLR 1 365 0 3735 255 34 20 chrX 169766466 169767336 -7206804 - L1MB1 LINE L1 -3122 3024 2131 2489 102 14 0 chrX 169767338 169767699 -7206441 - L1PB1 LINE L1 -4 6147 5782 474 77 0 58 chrX 169767699 169767803 -7206337 + (TA)n Simple_repeat Simple_repeat 1 98 0 3699 152 13 1 chrX 169767803 169768931 -7205209 - L1PB1 LINE L1 -360 5791 4656 6005 204 29 11 chrX 169768942 169771265 -7202875 + L1PA15 LINE L1 3620 6160 -5 223 186 0 0 chrX 169771277 169771320 -7202820 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 34 42 0 0 chrX 169771557 169771605 -7202535 + AT_rich Low_complexity Low_complexity 1 48 0 222 191 0 0 chrX 169771664 169771711 -7202429 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 231 322 0 23 chrX 169771715 169771802 -7202338 + L1 LINE L1 2659 2743 -3403 9782 193 29 24 chrX 169771837 169773791 -7200349 + L1M1 LINE L1 36 2000 -5565 1403 109 74 31 chrX 169773791 169774048 -7200092 + L1MA2 LINE L1 6037 6304 0 21 0 0 0 chrX 169774048 169774069 -7200071 + AT_rich Low_complexity Low_complexity 1 21 0 2313 98 3 0 chrX 169774232 169774528 -7199612 + AluSq SINE Alu 1 297 -16 228 67 0 0 chrX 169776564 169776594 -7197546 + (CA)n Simple_repeat Simple_repeat 2 31 0 287 283 133 8 chrX 169777071 169777191 -7196949 - MLT1I LTR MaLR -203 346 212 612 246 34 34 chrX 169777658 169777833 -7196307 - MLT1I LTR MaLR -228 181 7 237 139 0 0 chrX 169779946 169779989 -7194151 + (TG)n Simple_repeat Simple_repeat 1 43 0 2389 84 0 0 chrX 169781146 169781442 -7192698 - AluSx SINE Alu -16 296 1 351 336 23 46 chrX 169782482 169782613 -7191527 - L2 LINE L2 -7 3265 3138 457 308 28 14 chrX 169783723 169783866 -7190274 + MIR SINE MIR 1 145 -117 217 248 211 18 chrX 169783873 169783982 -7190158 + L2 LINE L2 3179 3308 -5 247 315 90 0 chrX 169784209 169784320 -7189820 - MIR SINE MIR -13 249 129 313 336 0 0 chrX 169784406 169784516 -7189624 + MIR SINE MIR 143 252 -10 24 0 0 0 chrX 169785007 169785031 -7189109 + AT_rich Low_complexity Low_complexity 1 24 0 428 277 13 50 chrX 169785243 169785425 -7188715 - MIR SINE MIR -71 191 17 278 341 0 0 chrX 169785470 169785561 -7188579 + MIR SINE MIR 63 153 -109 192 360 0 12 chrX 169785592 169785678 -7188462 - MIR SINE MIR -113 149 65 206 183 28 176 chrX 169786155 169786297 -7187843 + L2 LINE L2 2933 3053 -219 242 331 173 38 chrX 169786758 169786891 -7187249 + L2 LINE L2 3121 3271 -1 240 329 70 109 chrX 169787177 169787645 -7186495 + L2 LINE L2 2807 3256 -16 24 0 0 0 chrX 169787645 169787669 -7186471 + AT_rich Low_complexity Low_complexity 1 24 0 262 381 56 25 chrX 169787754 169787914 -7186226 + L2 LINE L2 3108 3272 0 230 190 17 17 chrX 169789057 169789115 -7185025 + CT-rich Low_complexity Low_complexity 1 58 0 193 370 0 14 chrX 169789369 169789442 -7184698 + L3 LINE CR1 1160 1231 -346 186 43 0 0 chrX 169789447 169789470 -7184670 + (TG)n Simple_repeat Simple_repeat 2 24 0 456 317 145 14 chrX 169789863 169790084 -7184056 + MIR SINE MIR 10 259 -3 264 299 68 34 chrX 169791553 169791670 -7182470 + L2 LINE L2 3139 3259 -13 231 61 0 0 chrX 169791671 169791704 -7182436 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 204 40 0 0 chrX 169794487 169794512 -7179628 + (TG)n Simple_repeat Simple_repeat 1 25 0 2336 187 41 68 chrX 169795889 169796429 -7177711 - MLT2B3 LTR ERVL -2 552 28 371 156 0 0 chrX 169796730 169796794 -7177346 - L1PA14 LINE L1 -9 6152 6089 495 274 82 23 chrX 169796864 169797058 -7177082 - MIR3 SINE MIR -61 147 2 2011 144 0 10 chrX 169797191 169797496 -7176644 - AluSc SINE Alu -7 302 1 211 274 0 68 chrX 169797535 169797608 -7176532 + L2 LINE L2 3234 3301 -12 471 339 15 0 chrX 169798567 169798697 -7175443 + L2 LINE L2 3137 3268 -4 1579 124 21 109 chrX 169800685 169801024 -7173116 - AluYb8 SINE Alu -9 309 1 356 298 0 53 chrX 169801647 169801718 -7172422 + L2 LINE L2 3199 3263 -50 1673 211 5 22 chrX 169801718 169802087 -7172053 + MLT1A1 LTR MaLR 2 364 -1 356 298 0 53 chrX 169802087 169802129 -7172011 + L2 LINE L2 3263 3306 -7 21 0 0 0 chrX 169803020 169803041 -7171099 + AT_rich Low_complexity Low_complexity 1 21 0 490 273 109 70 chrX 169803048 169803488 -7170652 - L1MEd LINE L1 -2362 3767 3311 619 268 141 17 chrX 169803490 169804088 -7170052 - L1MEd LINE L1 -2884 3245 2574 361 330 29 22 chrX 169804156 169804432 -7169708 - L1MEd LINE L1 -3661 2468 2191 2147 70 70 3 chrX 169804461 169804746 -7169394 - AluY SINE Alu -7 304 1 2148 196 26 0 chrX 169804986 169805415 -7168725 - L1MD1 LINE L1 -2 6240 5801 450 271 114 28 chrX 169805768 169806122 -7168018 - L1MEd LINE L1 -905 1585 1151 1273 234 31 11 chrX 169806124 169806479 -7167661 - Zaphod DNA AcHobo -1 4030 3669 * 1970 229 98 37 chrX 169806475 169806994 -7167146 + MLT1E LTR MaLR 43 593 0 234 206 147 29 chrX 169807073 169807141 -7166999 - MER58 DNA MER1_type 0 2420 2345 386 229 114 9 chrX 169807148 169807253 -7166887 - MER58 DNA MER1_type -99 116 1 1069 171 20 7 chrX 169807461 169807677 -7166463 - MLT1C-int LTR MaLR -1040 331 1 1760 196 138 12 chrX 169807677 169808091 -7166049 - MLT1C LTR MaLR 0 467 2 225 179 45 0 chrX 169808091 169808158 -7165982 + (TA)n Simple_repeat Simple_repeat 1 70 0 1165 204 68 71 chrX 169808159 169808555 -7165585 - L1MC4 LINE L1 -143 7899 7505 2211 253 48 31 chrX 169808582 169809190 -7164950 - Zaphod DNA AcHobo -3413 618 1 382 237 43 94 chrX 169809221 169809405 -7164735 - L1MEd LINE L1 -4970 1149 988 2225 118 18 0 chrX 169809405 169809736 -7164404 - L1PB4 LINE L1 -3 6153 5817 382 237 43 94 chrX 169809736 169809880 -7164260 - L1MEd LINE L1 -5131 988 838 411 246 0 55 chrX 169810067 169810177 -7163963 + MIR SINE MIR 33 136 -126 217 179 18 54 chrX 169810715 169810771 -7163369 - L2 LINE L2 0 3272 3219 283 197 38 0 chrX 169810789 169810847 -7163293 - AluSx SINE Alu -2 298 280 264 231 0 0 chrX 169810847 169810899 -7163241 + LTR30 LTR ERV1 1 52 -670 1406 73 7 153 chrX 169810899 169811174 -7162966 + LTR12 LTR ERV1 53 287 -427 348 209 12 0 chrX 169811176 169811262 -7162878 + LTR30 LTR ERV1 556 642 -80 695 83 42 0 chrX 169811265 169811361 -7162779 + LTR12 LTR ERV1 615 714 0 1635 154 0 0 chrX 169811361 169811607 -7162533 - AluSx SINE Alu -66 246 1 228 222 102 85 chrX 169811846 169812022 -7162118 + L2 LINE L2 1796 1974 -1340 189 322 0 0 chrX 169812003 169812062 -7162078 + L2 LINE L2 3214 3272 0 * 808 334 82 52 chrX 169812268 169812941 -7161199 + L2 LINE L2 2215 2907 -407 299 280 53 0 chrX 169813053 169813128 -7161012 + L2 LINE L2 3235 3313 0 652 292 73 21 chrX 169813266 169813337 -7160803 - MIR SINE MIR -35 227 161 2487 53 0 3 chrX 169813337 169813636 -7160504 - AluY SINE Alu -13 298 1 652 292 73 21 chrX 169813636 169813756 -7160384 - MIR SINE MIR -101 161 26 1858 157 0 10 chrX 169813972 169814277 -7159863 - AluSx SINE Alu -10 302 1 1474 188 20 60 chrX 169814366 169814717 -7159423 - MLT1A2 LTR MaLR -37 337 1 2601 61 0 3 chrX 169815349 169815659 -7158481 + AluSc SINE Alu 1 309 0 22 35 0 0 chrX 169817698 169817727 -7156413 + AT_rich Low_complexity Low_complexity 1 29 0 437 299 31 0 chrX 169818116 169818243 -7155897 + L2 LINE L2 3178 3308 -5 2524 150 8 0 chrX 169818468 169818855 -7155285 - MLT1B LTR MaLR 0 390 1 318 226 0 0 chrX 169820237 169820299 -7153841 + Tigger2 DNA MER2_type 7 68 -2650 * 2299 111 85 38 chrX 169820290 169820712 -7153428 + Tigger2 DNA MER2_type 2273 2714 -4 1778 283 75 24 chrX 169821405 169822237 -7151903 + L2 LINE L2 2447 3312 -1 369 196 93 0 chrX 169822325 169822431 -7151709 - MIR SINE MIR -83 179 58 18640 158 53 25 chrX 169822688 169827006 -7147134 + L1M1 LINE L1 17 4450 -3115 2047 111 0 24 chrX 169827038 169827366 -7146774 + AluSg1 SINE Alu 1 321 0 998 235 16 1 chrX 169828165 169828407 -7145733 - MLT1H LTR MaLR -255 294 1 331 341 43 90 chrX 169828453 169828776 -7145364 - L2 LINE L2 -497 2817 2510 21 0 0 0 chrX 169828832 169828853 -7145287 + AT_rich Low_complexity Low_complexity 1 21 0 237 302 0 0 chrX 169830552 169830605 -7143535 + L2 LINE L2 3251 3303 -10 451 210 322 7 chrX 169830754 169830897 -7143243 + MIR SINE MIR 72 259 -3 254 267 20 0 chrX 169830951 169831052 -7143088 - LTR33A LTR ERVL -17 506 404 507 223 51 91 chrX 169831216 169831413 -7142727 - LTR33A LTR ERVL -333 190 2 2132 93 4 4 chrX 169831645 169831979 -7142161 - AluSc SINE Alu 0 335 2 225 94 0 0 chrX 169832332 169832364 -7141776 + (CA)n Simple_repeat Simple_repeat 1 32 0 431 174 61 0 chrX 169832395 169832493 -7141647 + MER112 DNA MER1_type 156 259 -1 575 286 83 9 chrX 169833655 169833872 -7140268 + MIR SINE MIR 21 253 -9 26 64 0 0 chrX 169835257 169835304 -7138836 + AT_rich Low_complexity Low_complexity 1 47 0 2140 179 6 3 chrX 169836125 169836488 -7137652 + MLT1A1 LTR MaLR 1 364 -1 220 136 23 0 chrX 169837482 169837526 -7136614 + (TA)n Simple_repeat Simple_repeat 1 45 0 198 0 0 0 chrX 169837996 169838018 -7136122 + (T)n Simple_repeat Simple_repeat 1 22 0 1645 191 17 11 chrX 169838227 169838584 -7135556 + MLT1A1 LTR MaLR 7 365 0 323 153 69 28 chrX 169839138 169839210 -7134930 - L1ME LINE L1 -493 5671 5597 1579 178 27 7 chrX 169839295 169839588 -7134552 - AluJb SINE Alu -13 299 1 479 206 31 0 chrX 169840060 169840157 -7133983 + FRAM SINE Alu 56 155 -21 643 270 64 41 chrX 169840338 169840597 -7133543 - L1M4 LINE L1 -3451 2695 2419 1722 133 9 95 chrX 169840597 169840742 -7133398 + AluJb SINE Alu 1 107 -205 2216 82 11 0 chrX 169840742 169841054 -7133086 + AluY SINE Alu 1 315 0 1722 133 9 95 chrX 169841054 169841223 -7132917 + AluJb SINE Alu 107 289 -23 643 270 64 41 chrX 169841223 169841429 -7132711 - L1M4 LINE L1 -3727 2419 2219 565 195 23 17 chrX 169841474 169841648 -7132492 - L1MD3 LINE L1 -31 7964 7790 7395 141 81 8 chrX 169841763 169843153 -7130987 + Tigger2 DNA MER2_type 1192 2683 -35 1572 164 49 7 chrX 169843556 169843842 -7130298 - AluJb SINE Alu -14 298 1 217 276 78 135 chrX 169845452 169845644 -7128496 - MIR SINE MIR -18 244 64 759 74 37 0 chrX 169845773 169845881 -7128259 + AluSq/x SINE Alu 1 112 -200 1695 44 0 10 chrX 169846317 169846521 -7127619 + AluY SINE Alu 97 298 -13 619 246 42 50 chrX 169846531 169846771 -7127369 - LTR40c LTR ERVL -197 268 31 1197 145 4 88 chrX 169847205 169847454 -7126686 + AluJb SINE Alu 1 228 -84 332 302 65 16 chrX 169847830 169848075 -7126065 - L1 LINE L1 -1155 4991 4735 313 218 99 56 chrX 169848154 169848296 -7125844 - L1 LINE L1 -1549 4597 4450 1504 182 14 14 chrX 169848365 169848651 -7125489 + AluJb SINE Alu 6 291 -21 1067 187 5 19 chrX 169848695 169848904 -7125236 + AluJo SINE Alu 1 206 -106 216 0 0 0 chrX 169849487 169849511 -7124629 + (T)n Simple_repeat Simple_repeat 1 24 0 2234 108 3 0 chrX 169850488 169850776 -7123364 - AluSx SINE Alu -12 300 12 628 239 127 9 chrX 169851329 169851542 -7122598 - L2 LINE L2 -40 3273 3036 191 233 0 96 chrX 169851835 169851908 -7122232 - MIR SINE MIR -10 252 187 2401 86 0 10 chrX 169852455 169852768 -7121372 - AluSg SINE Alu 0 310 1 37 23 0 0 chrX 169853209 169853253 -7120887 + AT_rich Low_complexity Low_complexity 1 44 0 1763 159 3 31 chrX 169853329 169853619 -7120521 + AluSx SINE Alu 1 282 -30 244 230 40 0 chrX 169853891 169853965 -7120175 + L1M4 LINE L1 2072 2148 -4236 681 91 0 0 chrX 169854029 169854117 -7120023 + AluS SINE Alu 9 96 -217 1430 179 7 69 chrX 169854123 169854453 -7119687 + L1M4 LINE L1 5123 5423 -959 2189 107 7 0 chrX 169854453 169854751 -7119389 + AluSp SINE Alu 4 303 -10 1430 179 7 69 chrX 169854751 169854840 -7119300 + L1M4 LINE L1 5423 5516 -866 809 242 164 48 chrX 169855056 169855907 -7118233 + L1M4 LINE L1 4490 5445 -733 542 182 0 0 chrX 169855928 169856016 -7118124 - FLAM_A SINE Alu -54 88 1 180 339 15 0 chrX 169856186 169856251 -7117889 - MIR SINE MIR -111 151 86 189 329 41 0 chrX 169856375 169856448 -7117692 - MIR3 SINE MIR -35 173 98 549 244 41 154 chrX 169858392 169858613 -7115527 - MER91A DNA MER1_type 0 196 1 1974 137 13 10 chrX 169858674 169858980 -7115160 - AluSx SINE Alu -5 307 1 298 211 0 0 chrX 169859835 169859892 -7114248 - L2 LINE L2 0 3313 3257 2773 10 0 0 chrX 169859892 169860196 -7113944 + AluYa5 SINE Alu 1 304 -7 2199 66 0 28 chrX 169860305 169860633 -7113507 + AluSg SINE Alu 1 320 0 330 123 0 0 chrX 169860766 169860823 -7113317 + (TA)n Simple_repeat Simple_repeat 2 58 0 721 274 9 9 chrX 169860845 169861064 -7113076 + AluSc SINE Alu 1 219 -90 216 516 8 8 chrX 169861138 169861266 -7112874 + polypyrimidine Low_complexity Low_complexity 2 129 0 289 276 198 66 chrX 169861643 169861900 -7112240 + L3 LINE CR1 1150 1440 -137 590 296 37 56 chrX 169862053 169862133 -7112007 + L1M4c LINE L1 3024 3104 -3278 2085 91 14 0 chrX 169862133 169862437 -7111703 + AluSg SINE Alu 1 308 0 590 296 37 56 chrX 169862437 169862764 -7111376 + L1M4c LINE L1 3104 3424 -2958 2135 122 3 3 chrX 169863355 169863649 -7110491 + AluSx SINE Alu 1 294 -18 912 113 84 0 chrX 169863649 169863791 -7110349 + AluSg/x SINE Alu 135 288 -22 722 161 74 12 chrX 169863811 169863973 -7110167 - AluSg/x SINE Alu -4 306 135 2212 108 3 14 chrX 169863973 169864268 -7109872 - AluSg SINE Alu -18 292 1 432 148 12 0 chrX 169864316 169864397 -7109743 + Charlie5 DNA MER1_type 2536 2617 0 1054 198 0 0 chrX 169864537 169864709 -7109431 - AluJb SINE Alu -9 303 132 7510 31 20 2 chrX 169864709 169866015 -7108125 - L1PA4 LINE L1 0 6155 4840 1106 46 0 13 chrX 169866123 169866274 -7107866 - L1PA4 LINE L1 -1808 4338 4190 * 8688 87 11 0 chrX 169866273 169867550 -7106590 - L1PA4 LINE L1 -2900 3246 1956 1877 148 3 31 chrX 169868196 169868514 -7105626 + AluSx SINE Alu 1 309 -3 477 261 82 10 chrX 169868545 169868740 -7105400 + L1MC4 LINE L1 7685 7893 -149 27 0 0 0 chrX 169869096 169869123 -7105017 + AT_rich Low_complexity Low_complexity 1 27 0 336 311 111 36 chrX 169869175 169869400 -7104740 + L1ME LINE L1 5385 5626 -495 1722 203 45 5 chrX 169869563 169869942 -7104198 + L1MC4a LINE L1 7316 7709 -99 1585 187 0 17 chrX 169870979 169871279 -7102861 + AluJo SINE Alu 1 295 -17 409 173 0 0 chrX 169871285 169871360 -7102780 - L1MB4 LINE L1 -60 6120 6046 765 141 83 0 chrX 169871361 169871482 -7102658 + AluJo SINE Alu 6 136 -176 1095 241 58 84 chrX 169872276 169872839 -7101301 + L1M4 LINE L1 3048 3589 -2557 2138 117 70 3 chrX 169872839 169873180 -7100960 + THE1B LTR MaLR 1 364 0 1095 241 58 84 chrX 169873180 169873343 -7100797 + L1M4 LINE L1 3589 3755 -2391 1056 147 71 9 chrX 169873345 169873569 -7100571 + L1MA8 LINE L1 6050 6287 -4 368 43 0 0 chrX 169873597 169873643 -7100497 + L1MA6 LINE L1 6147 6192 -108 1427 102 28 114 chrX 169873643 169874075 -7100065 + MER4B LTR ERV1 1 610 0 260 128 21 0 chrX 169874075 169874122 -7100018 + L1MA6 LINE L1 6189 6236 -64 402 21 0 0 chrX 169874396 169874443 -7099697 + (CA)n Simple_repeat Simple_repeat 2 48 0 9690 95 20 0 chrX 169874979 169877193 -7096947 - L1PA6 LINE L1 -5 6149 3904 850 283 83 11 chrX 169877923 169878474 -7095666 - L1MEc LINE L1 -4766 1630 1040 1873 142 0 10 chrX 169878539 169878828 -7095312 - AluSx SINE Alu -26 286 1 1124 153 0 0 chrX 169878926 169879089 -7095051 - AluSg/x SINE Alu -13 297 135 1620 164 0 0 chrX 169879089 169879352 -7094788 - AluSg SINE Alu -12 298 36 3629 91 13 2 chrX 169879352 169879879 -7094261 - L1P LINE L1 -780 5366 4834 2308 100 3 0 chrX 169880567 169880876 -7093264 - AluSg SINE Alu 0 310 1 1842 145 32 7 chrX 169880888 169881171 -7092969 - AluSx SINE Alu -22 290 1 300 279 29 81 chrX 169881545 169881681 -7092459 + MIR3 SINE MIR 8 136 -72 327 208 52 0 chrX 169881891 169881968 -7092172 - MLT1F1 LTR MaLR -486 81 1 1204 154 8 43 chrX 169881969 169882203 -7091937 - L1MD3 LINE L1 -718 7277 7052 255 306 16 0 chrX 169882210 169882334 -7091806 - L1MEc LINE L1 -4104 2292 2167 4203 221 30 10 chrX 169882520 169883613 -7090527 + L1 LINE L1 4136 5205 -941 7031 55 6 1 chrX 169883613 169884510 -7089630 + L1PA7 LINE L1 5254 6154 0 1669 121 51 16 chrX 169884512 169884826 -7089314 + L1MA8 LINE L1 5959 6283 -8 4203 221 30 10 chrX 169884826 169884843 -7089297 + L1 LINE L1 5205 5272 -874 225 175 25 0 chrX 169884843 169884883 -7089257 + (TG)n Simple_repeat Simple_repeat 2 42 0 201 139 0 0 chrX 169884884 169884927 -7089213 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 342 0 0 0 chrX 169884933 169884971 -7089169 + (GA)n Simple_repeat Simple_repeat 2 39 0 269 296 99 21 chrX 169885611 169885753 -7088387 + MIR SINE MIR 47 199 -63 1084 204 115 70 chrX 169887297 169887670 -7086470 - MLT1B LTR MaLR 0 390 1 421 285 118 50 chrX 169887983 169888186 -7085954 - L1ME4a LINE L1 -276 5845 5657 1967 165 79 27 chrX 169888186 169888591 -7085549 + MSTC LTR MaLR 1 426 -2 421 285 118 50 chrX 169888591 169888902 -7085238 - L1ME4a LINE L1 -464 5657 5296 21 0 0 0 chrX 169889377 169889398 -7084742 + AT_rich Low_complexity Low_complexity 1 21 0 1801 191 18 3 chrX 169889864 169890200 -7083940 + MLT2C1 LTR ERVL 6 346 -51 2087 123 3 7 chrX 169890206 169890506 -7083634 + AluSx SINE Alu 1 299 -13 1668 171 16 19 chrX 169890543 169890865 -7083275 - Tigger2 DNA MER2_type -5 2713 2393 203 161 0 0 chrX 169890865 169890896 -7083244 + (TG)n Simple_repeat Simple_repeat 1 31 0 263 95 0 24 chrX 169890896 169890938 -7083202 + MLT2C1 LTR ERVL 357 397 0 272 250 120 40 chrX 169891720 169891820 -7082320 - LTR65 LTR ERV1 -10 659 552 873 243 29 25 chrX 169892274 169892517 -7081623 - MER110-int LTR ERV1 -3 4644 4401 213 218 127 0 chrX 169892901 169892956 -7081184 + MIR SINE MIR 40 101 -161 1120 239 8 56 chrX 169892976 169893336 -7080804 - L1MA9 LINE L1 -32 6280 5938 582 214 50 14 chrX 169893355 169893495 -7080645 + MIR SINE MIR 110 254 -8 1846 62 0 4 chrX 169893508 169893735 -7080405 - AluY SINE Alu -3 308 83 13208 95 6 27 chrX 169893761 169896392 -7077748 + L1PA7 LINE L1 1 2625 -3836 21715 91 20 0 chrX 169896492 169900361 -7073779 + L1PA7 LINE L1 2557 6469 0 351 349 71 18 chrX 169900435 169900604 -7073536 + MER5B DNA MER1_type 1 178 0 1474 219 15 0 chrX 169900799 169901127 -7073013 + L1P LINE L1 4097 4429 -1717 7618 197 201 11 chrX 169901128 169903674 -7070466 - L1P4 LINE L1 -581 5582 2528 1164 226 63 8 chrX 169903674 169903979 -7070161 + MER31B LTR ERV1 145 543 0 871 267 74 29 chrX 169904385 169904804 -7069336 - L1MC4a LINE L1 -1850 5958 5521 487 204 68 11 chrX 169904811 169905002 -7069138 - L1MC4a LINE L1 -2340 5468 5267 321 314 135 31 chrX 169905016 169905245 -7068895 - L1MC4a LINE L1 -894 5252 5000 339 296 70 23 chrX 169905278 169905623 -7068517 - L1MC4a LINE L1 -1298 4848 4488 238 320 56 8 chrX 169906412 169906537 -7067603 + L2 LINE L2 2724 2854 -460 2323 149 18 3 chrX 169906652 169907148 -7066992 - MER34B LTR ERV1 -29 536 3 297 289 0 0 chrX 169907155 169907231 -7066909 + MER63 DNA MER1_type 677 752 -84 345 330 54 107 chrX 169907261 169907615 -7066525 + L2 LINE L2 2938 3272 0 1974 132 3 31 chrX 169907705 169908024 -7066116 + AluSx SINE Alu 1 310 -2 702 263 6 0 chrX 169908479 169908639 -7065501 + FRAM SINE Alu 2 162 -4 523 87 70 23 chrX 169910644 169910816 -7063324 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 35 0 0 chrX 169910816 169910845 -7063295 + AT_rich Low_complexity Low_complexity 1 29 0 751 110 11 22 chrX 169910845 169911027 -7063113 + (TA)n Simple_repeat Simple_repeat 1 180 0 341 22 0 0 chrX 169911146 169911192 -7062948 + L1PA3 LINE L1 6110 6155 0 1176 240 106 34 chrX 169911228 169911578 -7062562 + LTR40a LTR ERVL 143 517 -2 237 156 22 0 chrX 169911584 169911629 -7062511 - MIR3 SINE MIR -13 195 150 270 316 11 0 chrX 169911629 169911724 -7062416 - MER103 DNA DNA -67 99 4 270 234 95 43 chrX 169911817 169911910 -7062230 - MIR SINE MIR -67 141 75 692 270 50 54 chrX 169912092 169912351 -7061789 + LTR16A1 LTR ERVL 198 455 -2 392 0 21 0 chrX 169912410 169912458 -7061682 + (TG)n Simple_repeat Simple_repeat 2 50 0 180 0 0 0 chrX 169912568 169912588 -7061552 + (A)n Simple_repeat Simple_repeat 1 20 0 217 243 14 108 chrX 169912906 169912980 -7061160 - L2 LINE L2 0 3272 3206 766 229 78 16 chrX 169912981 169913173 -7060967 + MER63A DNA MER1_type 1 204 -6 491 276 26 0 chrX 169913620 169913776 -7060364 + MER103 DNA DNA 5 164 -2 244 297 36 45 chrX 169915278 169915389 -7058751 - L2 LINE L2 -6 3307 3198 212 356 122 9 chrX 169916045 169916160 -7057980 - L2 LINE L2 -804 2510 2383 2327 173 56 42 chrX 169916401 169916899 -7057241 + MLT1D LTR MaLR 1 505 0 477 304 81 49 chrX 169916915 169917320 -7056820 + MLT1J LTR MaLR 56 511 0 2146 100 4 0 chrX 169917452 169917731 -7056409 + AluSg SINE Alu 1 326 0 394 22 0 0 chrX 169917731 169917777 -7056363 + (TAA)n Simple_repeat Simple_repeat 1 180 0 654 312 139 71 chrX 169917865 169918917 -7055223 + L2 LINE L2 2170 3299 -14 2441 54 0 17 chrX 169919830 169920126 -7054014 + AluY SINE Alu 2 292 -19 1617 184 24 40 chrX 169920548 169920918 -7053222 + MLT1A1 LTR MaLR 2 365 0 2175 108 7 0 chrX 169921508 169921815 -7052325 + AluSx SINE Alu 1 309 -3 21 36 0 0 chrX 169922465 169922493 -7051647 + AT_rich Low_complexity Low_complexity 1 28 0 1628 166 61 0 chrX 169922929 169923046 -7051094 + AluJb SINE Alu 1 109 -203 314 23 23 0 chrX 169923046 169923089 -7051051 + (CAAA)n Simple_repeat Simple_repeat 4 47 0 1628 166 61 0 chrX 169923089 169923248 -7050892 + AluJb SINE Alu 109 294 -18 2460 74 0 7 chrX 169923249 169923559 -7050581 + AluY SINE Alu 1 308 -3 839 276 34 34 chrX 169923678 169923946 -7050194 - MLT1A1 LTR MaLR -55 310 43 2525 105 26 0 chrX 169923946 169924326 -7049814 - L1PA14 LINE L1 -3 6158 5769 8464 137 2 2 chrX 169924387 169926478 -7047662 - L1PA10 LINE L1 -16 6152 4038 1226 83 52 0 chrX 169926478 169926670 -7047470 + L1MA1 LINE L1 6100 6302 0 8626 199 16 4 chrX 169926670 169929526 -7044614 + L1PA16 LINE L1 3279 6165 -1 234 0 0 0 chrX 169929901 169929927 -7044213 + (CA)n Simple_repeat Simple_repeat 1 26 0 513 297 29 0 chrX 169932479 169932617 -7041523 - L2 LINE L2 0 3313 3172 3887 108 64 2 chrX 169932805 169933402 -7040738 - MER39B LTR ERV1 0 625 8 219 88 0 0 chrX 169933633 169933667 -7040473 + (CA)n Simple_repeat Simple_repeat 2 35 0 216 302 19 0 chrX 169934010 169934063 -7040077 + L2 LINE L2 3154 3207 -65 * 416 235 59 10 chrX 169934059 169934161 -7039979 - L2 LINE L2 0 3313 3207 215 304 25 13 chrX 169934480 169934559 -7039581 - MIR SINE MIR -4 258 179 3645 103 15 6 chrX 169935340 169935956 -7038184 + L1PB1 LINE L1 5163 5781 -370 2567 97 0 0 chrX 169936079 169936440 -7037700 + L1PB1 LINE L1 5791 6151 0 438 243 29 0 chrX 169936474 169936577 -7037563 - Charlie8 DNA MER1_type -2231 186 81 951 179 61 31 chrX 169937155 169937351 -7036789 - MLT1A2 LTR MaLR 0 374 173 227 190 17 0 chrX 169937382 169937440 -7036700 + (TG)n Simple_repeat Simple_repeat 1 59 0 * 297 89 0 0 chrX 169937439 169937484 -7036656 + (GA)n Simple_repeat Simple_repeat 1 45 0 586 188 8 8 chrX 169937511 169937628 -7036512 - MLT1A2 LTR MaLR -218 156 40 786 177 14 7 chrX 169938404 169938551 -7035589 + L1ME LINE L1 5459 5606 -558 1788 134 27 30 chrX 169938552 169938881 -7035259 + L1MB4 LINE L1 5846 6173 -7 302 183 70 14 chrX 169938961 169939032 -7035108 + L1ME LINE L1 5601 5675 -489 257 0 30 0 chrX 169939839 169939872 -7034268 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chrX 169940979 169941008 -7033132 + AT_rich Low_complexity Low_complexity 1 29 0 506 206 79 32 chrX 169943032 169943158 -7030982 + MIR SINE MIR 28 159 -103 1729 195 108 14 chrX 169943386 169943801 -7030339 - MLT1D LTR MaLR 0 505 52 269 296 99 21 chrX 169944870 169945012 -7029128 - MIR SINE MIR -63 199 47 342 0 0 0 chrX 169945652 169945690 -7028450 + (TC)n Simple_repeat Simple_repeat 2 39 0 201 139 0 0 chrX 169945696 169945739 -7028401 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 * 227 200 0 17 chrX 169945736 169945796 -7028344 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1669 121 51 16 chrX 169945797 169946111 -7028029 - L1MA8 LINE L1 -8 6283 5959 7031 55 24 14 chrX 169946113 169947075 -7027065 - L1PA7 LINE L1 0 6154 5191 967 113 0 0 chrX 169947075 169947217 -7026923 - L1MA8 LINE L1 -348 5943 5802 24 0 0 0 chrX 169948132 169948156 -7025984 + AT_rich Low_complexity Low_complexity 1 24 0 476 330 109 14 chrX 169948850 169949198 -7024942 + L3 LINE CR1 1093 1473 -104 591 280 72 16 chrX 169949285 169949478 -7024662 - MIR SINE MIR -54 208 5 211 189 0 0 chrX 169949650 169949687 -7024453 + (TG)n Simple_repeat Simple_repeat 2 38 0 549 228 78 24 chrX 169949760 169949927 -7024213 + L2 LINE L2 2149 2324 -990 1158 305 72 38 chrX 169950159 169950660 -7023480 + L1MA6 LINE L1 7 524 -6265 * 12322 173 35 57 chrX 169950640 169954466 -7019674 + L1MA6 LINE L1 1356 6425 -517 674 194 69 62 chrX 169954472 169954632 -7019508 + FRAM SINE Alu 2 162 -4 218 156 22 0 chrX 169954661 169954706 -7019434 + GA-rich Low_complexity Low_complexity 2 47 0 2650 175 27 6 chrX 169954716 169955230 -7018910 + L1MA6 LINE L1 6411 6935 -7 410 289 209 14 chrX 169955432 169955643 -7018497 + MIR SINE MIR 1 252 -10 578 260 98 17 chrX 169956771 169956944 -7017196 + MER5A DNA MER1_type 1 187 -2 317 358 88 36 chrX 169957449 169957779 -7016361 - L2 LINE L2 -38 3234 2888 2268 127 104 8 chrX 169957933 169958319 -7015821 - MSTA LTR MaLR -5 423 1 308 256 146 0 chrX 169958706 169958788 -7015352 - L2 LINE L2 -19 3294 3201 257 352 0 11 chrX 169958852 169958943 -7015197 + MIR SINE MIR 11 100 -162 12547 190 69 15 chrX 169959107 169960461 -7013679 + L1MA4A LINE L1 408 1688 -5317 1705 180 23 10 chrX 169960461 169960761 -7013379 + AluJb SINE Alu 1 304 -8 12547 190 69 15 chrX 169960761 169962511 -7011629 + L1MA4A LINE L1 1688 3343 -3662 2156 113 3 3 chrX 169962511 169962811 -7011329 + AluSc SINE Alu 1 300 -9 12547 190 69 15 chrX 169962811 169963140 -7011000 + L1MA4A LINE L1 3343 3653 -3352 1977 124 3 0 chrX 169963140 169963422 -7010718 + AluSp SINE Alu 1 283 -30 12547 190 69 15 chrX 169963422 169964209 -7009931 + L1MA4A LINE L1 3653 4396 -2609 7357 99 5 26 chrX 169964209 169965304 -7008836 + MER11C LTR ERVK 1 1071 0 12547 190 69 15 chrX 169965304 169967311 -7006829 + L1MA4A LINE L1 4396 7001 -4 352 302 28 34 chrX 169967312 169967491 -7006649 + L1ME LINE L1 1646 1823 -4573 388 287 76 10 chrX 169967807 169968097 -7006043 + L1ME LINE L1 2141 2396 -3819 320 317 82 0 chrX 169968167 169968350 -7005790 + L1ME LINE L1 2732 2929 -3286 * 533 294 88 51 chrX 169968332 169968897 -7005243 + L1ME LINE L1 4559 5144 -1071 2359 58 0 0 chrX 169968910 169969211 -7004929 - AluY SINE Alu 0 306 6 404 278 56 28 chrX 169969306 169969546 -7004594 + L1ME LINE L1 5360 5605 -634 6798 216 17 14 chrX 169969568 169971167 -7002973 + L1P LINE L1 3573 5175 -971 351 0 0 0 chrX 169971324 169971363 -7002777 + (CA)n Simple_repeat Simple_repeat 1 39 0 274 234 68 127 chrX 169971363 169971615 -7002525 + L1ME LINE L1 5684 5920 -311 21 57 0 0 chrX 169971709 169971744 -7002396 + AT_rich Low_complexity Low_complexity 1 35 0 2372 83 0 3 chrX 169972023 169972324 -7001816 + AluSp SINE Alu 3 302 -11 5646 147 55 14 chrX 169972326 169973440 -7000700 - L1MC1 LINE L1 -27 6306 5149 21 0 0 0 chrX 169975234 169975255 -6998885 + AT_rich Low_complexity Low_complexity 1 21 0 351 44 0 0 chrX 169975284 169975329 -6998811 + (TG)n Simple_repeat Simple_repeat 2 46 0 398 314 50 88 chrX 169975512 169975853 -6998287 + MLT1H LTR MaLR 57 384 -25 1831 163 58 13 chrX 169975896 169976289 -6997851 - L1MB8 LINE L1 -1 6177 5767 276 30 0 0 chrX 169976427 169976460 -6997680 + (GA)n Simple_repeat Simple_repeat 2 34 0 700 246 35 0 chrX 169976842 169977013 -6997127 - MIR SINE MIR 0 262 86 21 0 0 0 chrX 169977858 169977879 -6996261 + AT_rich Low_complexity Low_complexity 1 21 0 399 328 29 23 chrX 169978222 169978393 -6995747 + L2 LINE L2 2609 2780 -534 21 82 0 0 chrX 169978891 169978940 -6995200 + AT_rich Low_complexity Low_complexity 1 49 0 187 361 21 41 chrX 169979082 169979179 -6994961 - L2 LINE L2 -22 3250 3156 294 309 91 0 chrX 169979331 169979441 -6994699 + L2 LINE L2 3194 3313 0 191 36 36 0 chrX 169980168 169980196 -6993944 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2588 141 34 0 chrX 169980251 169980663 -6993477 + MSTB LTR MaLR 1 426 0 225 83 0 0 chrX 169981021 169981057 -6993083 + (T)n Simple_repeat Simple_repeat 1 36 0 1316 62 0 0 chrX 169981971 169982133 -6992007 - AluY SINE Alu -1 310 149 2002 163 41 0 chrX 169982133 169982471 -6991669 + HERVH LTR ERV1 4798 5149 -2564 1297 126 33 5 chrX 169982472 169982686 -6991454 + HERVH LTR ERV1 5600 5819 -1894 * 2484 77 48 13 chrX 169982684 169983063 -6991077 + HERVH LTR ERV1 7322 7713 0 1328 154 85 111 chrX 169983063 169983523 -6990617 + LTR7 LTR ERV1 1 448 -2 1209 69 0 38 chrX 169983525 169983684 -6990456 - AluY SINE Alu -158 153 1 3182 133 6 8 chrX 169983864 169984351 -6989789 - LTR29 LTR ERV1 0 622 137 1526 240 104 43 chrX 169984936 169985544 -6988596 - MER50 LTR ERV1 0 734 90 214 174 0 0 chrX 169985700 169985746 -6988394 + (TA)n Simple_repeat Simple_repeat 2 47 0 1802 206 143 36 chrX 169985813 169986522 -6987618 - LTR1B LTR ERV1 -13 772 2 457 391 13 13 chrX 169987437 169987662 -6986478 - MIR SINE MIR -35 227 3 3214 126 61 50 chrX 169987759 169988362 -6985778 - MER4B LTR ERV1 0 610 1 2806 152 48 29 chrX 169988378 169988958 -6985182 - LTR49 LTR ERV1 -4 591 1 251 241 0 0 chrX 169989413 169989467 -6984673 + (TAA)n Simple_repeat Simple_repeat 3 56 0 375 272 136 8 chrX 169989475 169989600 -6984540 - MIR SINE MIR -6 256 116 3577 154 12 3 chrX 169989602 169990198 -6983942 + MER41B LTR ERV1 2 602 -33 511 138 12 0 chrX 169990302 169990382 -6983758 + MER41A LTR ERV1 474 554 0 311 298 53 0 chrX 169990382 169990476 -6983664 - MIR SINE MIR -149 113 15 * 421 296 143 23 chrX 169990456 169990672 -6983468 + MIR SINE MIR 21 262 0 222 118 0 0 chrX 169991129 169991163 -6982977 + (CA)n Simple_repeat Simple_repeat 1 34 0 517 223 185 32 chrX 169991601 169991758 -6982382 - MER5A DNA MER1_type 0 189 9 284 238 107 12 chrX 169991861 169991945 -6982195 + MER5A DNA MER1_type 98 189 0 810 223 18 6 chrX 169992027 169992193 -6981947 + MER5B DNA MER1_type 11 178 0 33 0 0 0 chrX 169992454 169992487 -6981653 + AT_rich Low_complexity Low_complexity 1 33 0 206 271 0 0 chrX 169993032 169993080 -6981060 - L2 LINE L2 -10 3303 3256 279 321 0 18 chrX 169994668 169994780 -6979360 + LTR40a LTR ERVL 6 115 -404 41975 41 26 2 chrX 169994780 170000253 -6973887 + L1P1 LINE L1 13 5613 -542 12202 208 103 37 chrX 170000353 170004977 -6969163 - L1 LINE L1 -1704 5144 1 440 259 163 11 chrX 170005709 170005979 -6968161 + L1ME4a LINE L1 5594 5904 -217 1718 233 23 36 chrX 170006545 170007072 -6967068 + L1MB7 LINE L1 5620 6139 -45 679 259 20 55 chrX 170007349 170007550 -6966590 - MER63A DNA MER1_type 0 210 17 1599 184 120 16 chrX 170008253 170008703 -6965437 - LTR54B LTR ERV1 -1 497 1 1133 218 95 30 chrX 170008991 170009391 -6964749 + LTR37A LTR ERV1 1 426 0 199 209 105 95 chrX 170009896 170010001 -6964139 - MER5B DNA MER1_type 0 178 73 25 31 0 0 chrX 170011133 170011165 -6962975 + AT_rich Low_complexity Low_complexity 1 32 0 480 297 40 0 chrX 170011587 170011735 -6962405 - MIR SINE MIR -4 258 105 233 163 0 0 chrX 170012011 170012054 -6962086 - MARNA DNA Mariner -343 243 201 957 178 61 20 chrX 170012333 170012530 -6961610 + MER3 DNA MER1_type 5 209 0 3526 133 72 9 chrX 170212946 170213583 -6760557 + Tigger3(Golem) DNA MER2_type 2351 3027 -2 552 144 21 0 chrX 170213761 170213858 -6760282 + L1MA10 LINE L1 6236 6334 0 1011 278 79 18 chrX 170214230 170214672 -6759468 - L1MC/D LINE L1 -2082 5726 5258 1068 225 14 0 chrX 170214820 170215038 -6759102 - AluJo SINE Alu -89 223 3 292 296 23 0 chrX 170215073 170215161 -6758979 - LTR16A LTR ERVL -5 445 356 22 0 0 0 chrX 170215332 170215354 -6758786 + AT_rich Low_complexity Low_complexity 1 22 0 954 202 75 33 chrX 170215772 170216134 -6758006 - L1MC5 LINE L1 -90 7871 7495 1688 189 0 6 chrX 170216140 170216458 -6757682 - L1 LINE L1 -3304 2842 2527 236 292 56 49 chrX 170216462 170216606 -6757534 - L1MC/D LINE L1 -1328 4818 4674 11037 192 123 12 chrX 170216658 170219562 -6754578 - L1PBa LINE L1 -3626 3236 6 234 377 40 35 chrX 170220955 170221154 -6752986 + L2 LINE L2 154 353 -2961 461 216 0 0 chrX 170221461 170221535 -6752605 - MER63 DNA MER1_type -2 1058 985 337 207 46 35 chrX 170221541 170221628 -6752512 - MER63 DNA MER1_type -348 714 1 782 104 26 9 chrX 170222057 170222172 -6751968 - MSTB1 LTR MaLR 0 432 316 214 44 111 0 chrX 170222538 170222583 -6751557 + A-rich Low_complexity Low_complexity 2 51 0 614 322 57 27 chrX 170222872 170223303 -6750837 + LTR33 LTR ERVL 25 513 -8 646 297 58 47 chrX 170223819 170224183 -6749957 + L1ME3A LINE L1 5517 5884 -286 318 326 0 0 chrX 170225820 170225912 -6748228 - L3 LINE CR1 -1 1576 1485 2143 95 21 7 chrX 170227124 170227407 -6746733 - AluSx SINE Alu -25 287 1 1332 108 0 0 chrX 170227958 170228161 -6745979 + L1MA4 LINE L1 6097 6299 -1 1857 156 0 3 chrX 170228588 170228915 -6745225 + AluSx SINE Alu 1 326 0 27 0 0 0 chrX 170230218 170230245 -6743895 + AT_rich Low_complexity Low_complexity 1 27 0 424 284 58 48 chrX 170231199 170231407 -6742733 - MIR SINE MIR -7 255 46 329 293 173 27 chrX 170231679 170231829 -6742311 - MIR3 SINE MIR -17 191 20 291 68 68 68 chrX 170232419 170232478 -6741662 + L1MA5 LINE L1 6220 6278 -22 296 266 102 37 chrX 170232561 170232761 -6741379 - MER20B DNA MER1_type 0 219 2 768 351 13 53 chrX 170232821 170233330 -6740810 - L2 LINE L2 -5 3267 2791 943 291 45 73 chrX 170234327 170234832 -6739308 + LTR16C LTR ERVL 1 491 0 356 360 70 0 chrX 170235361 170235475 -6738665 + L2 LINE L2 3150 3271 -1 2324 103 0 3 chrX 170237407 170237717 -6736423 + AluSg SINE Alu 1 309 -1 203 314 145 6 chrX 170237966 170238125 -6736015 + MIR3 SINE MIR 27 207 -1 1410 266 62 21 chrX 170238175 170238608 -6735532 - LTR16A1 LTR ERVL 0 457 7 228 35 0 0 chrX 170239086 170239115 -6735025 + (A)n Simple_repeat Simple_repeat 1 29 0 2264 179 44 2 chrX 170239253 170239662 -6734478 - MSTB LTR MaLR 0 426 1 1992 113 3 0 chrX 170240438 170240763 -6733377 - AluSx SINE Alu 0 326 1 211 294 43 54 chrX 170241813 170241905 -6732235 - L2 LINE L2 -42 3271 3181 * 547 340 166 45 chrX 170241897 170243019 -6731121 - L2 LINE L2 -1743 1571 314 204 67 0 0 chrX 170243041 170243071 -6731069 + (TG)n Simple_repeat Simple_repeat 1 30 0 286 230 100 20 chrX 170243721 170243821 -6730319 + MIR SINE MIR 105 212 -50 273 119 0 0 chrX 170244673 170244715 -6729425 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 769 240 23 0 chrX 170244835 170245006 -6729134 + MER58B DNA MER1_type 167 341 0 645 347 15 15 chrX 170245296 170245558 -6728582 - MIR SINE MIR 0 262 1 205 333 96 34 chrX 170245558 170245711 -6728429 + L2 LINE L2 3065 3228 -44 25 51 0 0 chrX 170247367 170247406 -6726734 + AT_rich Low_complexity Low_complexity 1 39 0 360 320 118 6 chrX 170247857 170248035 -6726105 + MIR SINE MIR 2 199 -63 525 32 0 0 chrX 170248139 170248202 -6725938 + (CA)n Simple_repeat Simple_repeat 1 63 0 2141 208 38 16 chrX 170248243 170248695 -6725445 + MLT1C LTR MaLR 6 467 0 4791 126 9 26 chrX 170248993 170249539 -6724601 + Tigger2 DNA MER2_type 1 530 -2188 2304 72 21 0 chrX 170249539 170249829 -6724311 + AluY SINE Alu 1 296 -15 4791 126 9 26 chrX 170249829 170250074 -6724066 + Tigger2 DNA MER2_type 530 778 -1940 1427 133 44 8 chrX 170250105 170250354 -6723786 + Tigger2 DNA MER2_type 2451 2708 -10 1849 181 103 6 chrX 170250602 170251235 -6722905 - L1M4 LINE L1 -599 5575 4883 250 196 22 0 chrX 170251655 170251701 -6722439 + L1M4 LINE L1 3494 3540 -2606 * 1372 252 28 48 chrX 170251700 170252200 -6721940 + L1ME LINE L1 157 646 -5424 416 238 119 0 chrX 170252226 170252411 -6721729 + L1ME LINE L1 764 970 -5100 3522 223 42 50 chrX 170252548 170253747 -6720393 - L1M4 LINE L1 -1444 4702 3513 336 135 0 0 chrX 170253746 170253798 -6720342 + L1 LINE L1 5136 5187 -959 * 225 281 16 0 chrX 170254080 170254144 -6719996 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2439 113 25 0 chrX 170254255 170254610 -6719530 + THE1B LTR MaLR 1 364 0 21 57 0 0 chrX 170254969 170255004 -6719136 + AT_rich Low_complexity Low_complexity 1 35 0 416 324 7 21 chrX 170256339 170256481 -6717659 + MIR SINE MIR 41 180 -82 281 291 0 0 chrX 170256688 170256767 -6717373 - HsTC2 DNA Tc2 -1812 86 8 506 268 29 14 chrX 170256772 170256910 -6717230 - MIR SINE MIR -1 261 122 2177 61 0 24 chrX 170257228 170257524 -6716616 + L1PA7 LINE L1 5852 6140 -14 1312 185 39 1 chrX 170257611 170257867 -6716273 - L1MC3 LINE L1 -326 5825 5725 293 271 209 16 chrX 170258064 170258193 -6715947 - MER5A DNA MER1_type -3 186 33 22 35 0 0 chrX 170258444 170258473 -6715667 + AT_rich Low_complexity Low_complexity 1 29 0 5740 27 0 0 chrX 170258590 170259262 -6714878 + L1PA4 LINE L1 5481 6152 -3 1177 179 5 0 chrX 170259388 170259606 -6714534 + L1 LINE L1 3509 3727 -2419 552 14 0 0 chrX 170259617 170259686 -6714454 + L1PA4 LINE L1 6087 6155 0 2436 121 83 40 chrX 170260767 170261222 -6712918 + L1PA16 LINE L1 5685 6159 -7 21 82 0 0 chrX 170262703 170262752 -6711388 + AT_rich Low_complexity Low_complexity 1 49 0 384 77 0 0 chrX 170262804 170262856 -6711284 + (CA)n Simple_repeat Simple_repeat 2 53 0 383 242 42 33 chrX 170263374 170263494 -6710646 - L2 LINE L2 -4 3309 3189 23 33 0 0 chrX 170264459 170264489 -6709651 + AT_rich Low_complexity Low_complexity 1 30 0 224 239 0 0 chrX 170265207 170265253 -6708887 + L2 LINE L2 3264 3309 -4 3955 197 52 13 chrX 170265698 170266688 -6707452 - L1MB2 LINE L1 -7 6164 5106 1749 174 7 7 chrX 170266688 170266987 -6707153 - AluJo SINE Alu -13 299 1 3955 197 52 13 chrX 170266987 170267364 -6706776 - L1MB2 LINE L1 -1065 5106 4745 26 50 0 0 chrX 170267996 170268036 -6706104 + AT_rich Low_complexity Low_complexity 1 40 0 1711 113 0 0 chrX 170268096 170268327 -6705813 + AluSg/x SINE Alu 76 306 -6 4489 194 42 33 chrX 170268454 170270360 -6703780 + L1MD1 LINE L1 1514 3434 -3106 681 155 4 216 chrX 170270356 170270432 -6703708 + L1MD1 LINE L1 5907 5997 -639 * 291 56 0 0 chrX 170270432 170270468 -6703672 - U2 snRNA snRNA -152 36 1 681 155 4 216 chrX 170270468 170270588 -6703552 + L1MD1 LINE L1 5997 6089 -547 2875 140 18 10 chrX 170270588 170271069 -6703071 + L1MA8 LINE L1 5783 6280 -11 2322 184 36 57 chrX 170271121 170271696 -6702444 + L1MD1 LINE L1 6072 6634 -2 23 33 0 0 chrX 170271905 170271935 -6702205 + AT_rich Low_complexity Low_complexity 1 30 0 221 30 61 0 chrX 170272162 170272195 -6701945 + T-rich Low_complexity Low_complexity 2 36 0 2350 96 0 0 chrX 170272199 170272511 -6701629 - AluSx SINE Alu 0 312 1 284 298 12 12 chrX 170272594 170272678 -6701462 + MIR SINE MIR 178 261 -1 540 224 24 16 chrX 170272723 170272848 -6701292 - L2 LINE L2 -1 3312 3187 1030 84 0 0 chrX 170273328 170273471 -6700669 + L1MA1 LINE L1 6054 6196 -106 416 118 0 59 chrX 170274656 170274741 -6699399 - L1MA10 LINE L1 -2 6332 6253 322 154 0 0 chrX 170274818 170274870 -6699270 + L1PA16 LINE L1 5898 5949 -217 5255 129 19 38 chrX 170274870 170275817 -6698323 + L1PA16 LINE L1 5200 6128 -38 2197 96 24 0 chrX 170275817 170276108 -6698032 - AluSp SINE Alu -15 298 1 5255 129 19 38 chrX 170276108 170276145 -6697995 + L1PA16 LINE L1 6128 6164 -2 1229 134 46 14 chrX 170276161 170276378 -6697762 + L1PA16 LINE L1 5943 6166 0 248 179 0 0 chrX 170276583 170276622 -6697518 - U2 snRNA snRNA -147 41 3 751 282 61 63 chrX 170276682 170277111 -6697029 + MLT1L LTR MaLR 186 613 -2 628 273 79 0 chrX 170278236 170278401 -6695739 + MER5B DNA MER1_type 1 178 0 282 342 73 30 chrX 170278413 170278647 -6695493 + L2 LINE L2 2804 3047 -225 340 64 0 0 chrX 170278783 170278830 -6695310 - MADE1 DNA Mariner 0 80 34 263 356 19 0 chrX 170278831 170278935 -6695205 + L2 LINE L2 3195 3300 -13 30107 42 4 3 chrX 170278939 170282785 -6691355 + L1PA7 LINE L1 1644 5494 -660 2300 87 0 10 chrX 170282785 170283094 -6691046 + AluY SINE Alu 1 306 -5 30107 42 4 3 chrX 170283094 170283756 -6690384 + L1PA7 LINE L1 5494 6154 0 391 278 6 49 chrX 170284779 170284941 -6689199 + MLT1H LTR MaLR 21 175 -374 414 0 0 0 chrX 170285007 170285053 -6689087 + (A)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chrX 170287894 170287915 -6686225 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chrX 170288244 170288275 -6685865 + (GA)n Simple_repeat Simple_repeat 1 31 0 411 202 0 0 chrX 170288347 170288431 -6685709 + L1M4 LINE L1 4499 4582 -1564 299 219 24 37 chrX 170288646 170288728 -6685412 + MLT1H LTR MaLR 23 103 -446 * 394 204 86 0 chrX 170288727 170288820 -6685320 + MLT1H LTR MaLR 433 533 -16 1530 204 92 55 chrX 170289537 170290046 -6684094 - L1ME2 LINE L1 -9 6155 5628 * 1767 254 84 34 chrX 170290043 170290371 -6683769 - L1ME2 LINE L1 -1542 4604 4294 288 0 0 0 chrX 170290371 170290403 -6683737 + (TA)n Simple_repeat Simple_repeat 1 32 0 1767 254 84 34 chrX 170290403 170290833 -6683307 - L1ME2 LINE L1 -1852 4294 3808 392 236 30 2 chrX 170290832 170290952 -6683188 + L1M4 LINE L1 2360 2481 -3665 * 333 258 0 0 chrX 170291169 170291258 -6682882 + L1MD1 LINE L1 6147 6235 -7 223 154 0 39 chrX 170291703 170291755 -6682385 + T-rich Low_complexity Low_complexity 2 51 0 1924 146 15 54 chrX 170291872 170292262 -6681878 - THE1C LTR MaLR 0 375 1 327 94 0 0 chrX 170292461 170292514 -6681626 + L1MA9 LINE L1 6222 6274 -38 22 80 0 0 chrX 170292514 170292564 -6681576 + AT_rich Low_complexity Low_complexity 1 50 0 315 266 68 54 chrX 170292564 170292973 -6681167 + L1M4 LINE L1 2850 3264 -2882 354 45 0 0 chrX 170293210 170293254 -6680886 + (CA)n Simple_repeat Simple_repeat 2 45 0 201 74 0 0 chrX 170293255 170293282 -6680858 + (TC)n Simple_repeat Simple_repeat 1 27 0 2061 115 7 0 chrX 170293438 170293733 -6680407 + AluSx SINE Alu 5 301 -11 3811 231 31 49 chrX 170293974 170295461 -6678679 + L1MA8 LINE L1 2410 3873 -3692 2351 68 0 0 chrX 170295461 170295756 -6678384 + AluY SINE Alu 1 295 -16 3811 231 31 49 chrX 170295756 170296122 -6678018 + L1MA8 LINE L1 3873 4244 -3321 * 9756 169 40 11 chrX 170296099 170298885 -6675255 + L1MA8 LINE L1 4845 7706 -4 482 295 34 22 chrX 170298918 170299648 -6674492 + L1ME4a LINE L1 5299 6023 -98 222 150 0 0 chrX 170299755 170299795 -6674345 + (TTATG)n Simple_repeat Simple_repeat 3 42 0 2243 88 3 7 chrX 170299905 170300200 -6673940 + AluSg SINE Alu 1 294 -16 486 175 45 2 chrX 170300235 170300344 -6673796 + L1MA9 LINE L1 6197 6320 -14 5902 165 15 20 chrX 170300405 170301818 -6672322 + L1MA7 LINE L1 4875 6287 -4 304 315 46 28 chrX 170301833 170301941 -6672199 + L1ME LINE L1 5480 5589 -532 363 61 0 91 chrX 170302021 170302087 -6672053 - L1PA6 LINE L1 0 6154 6095 28 29 0 0 chrX 170302163 170302198 -6671942 + AT_rich Low_complexity Low_complexity 1 35 0 474 263 19 32 chrX 170302311 170302467 -6671673 - MER5B DNA MER1_type -24 154 1 21 0 0 0 chrX 170302968 170302989 -6671151 + AT_rich Low_complexity Low_complexity 1 21 0 1475 346 144 21 chrX 170303132 170304718 -6669422 - L2 LINE L2 -5 3267 1494 706 192 7 7 chrX 170306648 170306799 -6667341 - LTR37A LTR ERV1 -3 423 273 1688 198 50 6 chrX 170306819 170307157 -6666983 - MLT1A1 LTR MaLR -12 353 1 451 237 101 19 chrX 170307163 170307370 -6666770 - LTR37A LTR ERV1 -162 264 41 5625 224 68 25 chrX 170307566 170307618 -6666522 - L1MD1 LINE L1 -1 6635 6587 1021 38 0 15 chrX 170307618 170307750 -6666390 + L1PA13 LINE L1 6021 6150 -13 5625 224 68 25 chrX 170307750 170310660 -6663480 - L1MD1 LINE L1 -49 6587 3540 1033 169 37 5 chrX 170310660 170310849 -6663291 - MLT1D LTR MaLR -310 195 1 459 238 15 145 chrX 170310849 170311056 -6663084 - MLT1D-int LTR MaLR 0 1734 1243 1244 232 12 0 chrX 170311061 170311315 -6662825 - L1MD1 LINE L1 -6257 283 27 24 0 0 0 chrX 170311670 170311694 -6662446 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 170312046 170312075 -6662065 + AT_rich Low_complexity Low_complexity 1 29 0 325 289 0 9 chrX 170312100 170312214 -6661926 - L1MC4 LINE L1 0 8042 7930 233 220 38 38 chrX 170312243 170312375 -6661765 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 299 198 42 62 chrX 170312381 170312477 -6661663 - L1MC4 LINE L1 -144 7898 7805 370 232 289 9 chrX 170312536 170312715 -6661425 - L1MC4 LINE L1 -172 7676 7415 856 127 45 13 chrX 170312772 170312929 -6661211 - L1MA8 LINE L1 -5 6286 6125 492 234 32 32 chrX 170312930 170313088 -6661052 - L1MC4 LINE L1 -1996 5812 5655 1657 275 16 18 chrX 170313263 170313699 -6660441 - LTR16A LTR ERVL 0 450 16 254 369 0 0 chrX 170313872 170313956 -6660184 + L2 LINE L2 3229 3312 -1 586 343 93 20 chrX 170313973 170314372 -6659768 + L3 LINE CR1 537 964 -613 597 192 0 0 chrX 170314394 170314514 -6659626 + (TA)n Simple_repeat Simple_repeat 1 120 0 204 222 0 0 chrX 170314540 170314576 -6659564 + (TATG)n Simple_repeat Simple_repeat 3 38 0 247 225 25 50 chrX 170314846 170314926 -6659214 + L1MA10 LINE L1 3705 3782 -2364 261 299 37 37 chrX 170315518 170315735 -6658405 + L1MA10 LINE L1 4405 4621 -1525 303 294 105 7 chrX 170316272 170316415 -6657725 + L1MA10 LINE L1 5266 5422 -2386 286 246 141 63 chrX 170316438 170316580 -6657560 - L2 LINE L2 -5 3308 3156 1960 147 0 0 chrX 170316586 170316872 -6657268 + AluSx SINE Alu 1 286 -26 987 203 75 62 chrX 170316915 170317221 -6656919 + L1MA10 LINE L1 6025 6334 0 5394 140 27 4 chrX 170317458 170318477 -6655663 + L1MB1 LINE L1 5126 6167 -1 3809 229 43 30 chrX 170318487 170320028 -6654112 - L1MC4a LINE L1 -17 7791 4761 823 144 0 8 chrX 170320055 170320180 -6653960 - FLAM_C SINE Alu -9 124 1 355 339 52 62 chrX 170320354 170320723 -6653417 + L1MEd LINE L1 3 367 -5752 254 298 85 40 chrX 170320843 170321091 -6653049 + L1MEd LINE L1 532 790 -5329 307 114 14 207 chrX 170321130 170321227 -6652913 - Charlie5 DNA MER1_type -3 2582 2518 2048 137 0 0 chrX 170321227 170321534 -6652606 + AluJb SINE Alu 2 308 -4 307 114 14 207 chrX 170321534 170321576 -6652564 - Charlie5 DNA MER1_type -67 2518 2470 432 270 55 110 chrX 170321701 170321938 -6652202 - L2 LINE L2 -3 3310 3087 261 119 0 0 chrX 170321940 170321982 -6652158 + (TG)n Simple_repeat Simple_repeat 1 42 0 217 357 0 0 chrX 170321996 170322066 -6652074 - L2 LINE L2 -234 3079 3010 231 234 45 90 chrX 170322072 170322183 -6651957 + L1MEd LINE L1 897 1002 -5117 708 131 24 95 chrX 170322316 170322484 -6651656 - Charlie5 DNA MER1_type 0 2624 2469 338 232 14 0 chrX 170322482 170322551 -6651589 - Charlie5 DNA MER1_type -2542 70 1 * 23 0 0 0 chrX 170323966 170323989 -6650151 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chrX 170325218 170325257 -6648883 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 266 267 52 43 chrX 170325281 170325397 -6648743 - MIR SINE MIR -72 190 74 2534 11 0 0 chrX 170325650 170325927 -6648213 - AluYa5 SINE Alu -13 298 22 316 321 101 46 chrX 170326239 170326457 -6647683 - MIR SINE MIR -13 249 20 421 60 0 0 chrX 170326532 170326582 -6647558 + THE1A LTR MaLR 306 355 0 284 222 50 40 chrX 170326582 170326681 -6647459 - L1M2 LINE L1 -6496 353 254 273 319 100 31 chrX 170326879 170327039 -6647101 - MIR3 SINE MIR -15 193 23 2573 119 25 46 chrX 170327246 170327682 -6646458 - MSTA LTR MaLR 0 428 2 244 347 35 28 chrX 170327804 170327948 -6646192 + L2 LINE L2 3163 3307 -6 335 289 63 6 chrX 170328195 170328354 -6645786 - L1ME4a LINE L1 -16 6105 5938 7490 155 32 8 chrX 170328358 170330728 -6643412 + L1MA4A LINE L1 3879 6299 -4 1045 201 18 75 chrX 170330742 170331126 -6643014 + L1MC5 LINE L1 6924 7285 -676 217 307 0 13 chrX 170331135 170331210 -6642930 + MIR SINE MIR 158 231 -31 1366 219 55 59 chrX 170331702 170332159 -6641981 + MLT1C LTR MaLR 13 467 0 1197 121 11 0 chrX 170332707 170332889 -6641251 + MER46B DNA MER2_type 1 59 -177 289 286 23 30 chrX 170332937 170333070 -6641070 - L1ME4a LINE L1 -365 5756 5625 22 0 0 0 chrX 170334061 170334083 -6640057 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chrX 170334103 170334126 -6640014 + (TG)n Simple_repeat Simple_repeat 2 24 0 387 263 26 0 chrX 170334227 170334379 -6639761 - L1ME4a LINE L1 -285 5836 5678 1051 298 34 29 chrX 170334575 170334991 -6639149 + LTR16C LTR ERVL 74 491 0 2233 99 0 0 chrX 170335143 170335437 -6638703 + AluSg SINE Alu 1 294 -16 915 204 24 19 chrX 170335888 170336094 -6638046 + MER3 DNA MER1_type 2 208 -1 717 280 121 0 chrX 170336309 170336541 -6637599 - MIR SINE MIR 0 262 3 191 352 40 45 chrX 170337679 170337855 -6636285 - L2 LINE L2 -410 2904 2730 180 111 0 0 chrX 170339262 170339289 -6634851 + (CATA)n Simple_repeat Simple_repeat 4 30 0 271 330 33 17 chrX 170339930 170340140 -6634000 + L3 LINE CR1 935 1198 -379 193 291 67 60 chrX 170340136 170340270 -6633870 + L2 LINE L2 2356 2490 -824 * 348 362 8 0 chrX 170340529 170340656 -6633484 + L2 LINE L2 2507 2634 -680 309 304 104 0 chrX 170340660 170340795 -6633345 - MIR SINE MIR -49 213 65 3232 152 37 13 chrX 170341971 170342591 -6631549 + L1MC1 LINE L1 5699 6333 0 1908 261 44 26 chrX 170342597 170342729 -6631411 + HAL1b LINE L1 171 299 -1049 1418 193 147 46 chrX 170342729 170343144 -6630996 - MSTB2 LTR MaLR 0 457 1 1908 261 44 26 chrX 170343144 170343789 -6630351 + HAL1b LINE L1 299 962 -386 2105 117 3 0 chrX 170344235 170344564 -6629576 - AluSx SINE Alu 0 330 1 321 259 38 70 chrX 170344789 170344947 -6629193 - MER31-int LTR ERV1 -1870 3066 2914 252 0 0 0 chrX 170345026 170345054 -6629086 + (T)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chrX 170345097 170345136 -6629004 + AT_rich Low_complexity Low_complexity 1 39 0 450 94 0 0 chrX 170345499 170345563 -6628577 + (TTCC)n Simple_repeat Simple_repeat 1 64 0 32 0 0 0 chrX 170346566 170346598 -6627542 + AT_rich Low_complexity Low_complexity 1 32 0 518 262 11 66 chrX 170346886 170347157 -6626983 - MER31-int LTR ERV1 -3640 1296 1041 198 148 16 33 chrX 170347404 170347465 -6626675 + A-rich Low_complexity Low_complexity 1 60 0 707 231 67 25 chrX 170347630 170347868 -6626272 - LTR37B LTR ERV1 0 468 221 439 135 22 67 chrX 170347869 170347958 -6626182 - MER53 DNA DNA 0 189 105 2011 107 7 10 chrX 170348214 170348504 -6625636 + AluSg SINE Alu 1 289 -21 318 198 162 45 chrX 170349107 170349218 -6624922 - L2 LINE L2 0 3313 3190 436 304 56 37 chrX 170350076 170350346 -6623794 + MLT1J LTR MaLR 230 504 -7 425 287 140 13 chrX 170350486 170350643 -6623497 - MER5A DNA MER1_type -4 185 9 30 0 0 0 chrX 170350887 170350917 -6623223 + AT_rich Low_complexity Low_complexity 1 30 0 781 177 20 110 chrX 170350920 170351174 -6622966 - LTR37B LTR ERV1 -63 405 175 2139 119 0 0 chrX 170351737 170352054 -6622086 - AluSq SINE Alu 0 317 1 302 294 73 62 chrX 170352140 170352412 -6621728 + L1M4 LINE L1 20 294 -6565 2937 233 57 15 chrX 170352450 170352980 -6621160 + L1M4 LINE L1 3479 3985 -2972 763 168 7 19 chrX 170352980 170353135 -6621005 - L1PB4 LINE L1 0 6156 6004 2937 233 57 15 chrX 170353135 170353601 -6620539 + L1M4 LINE L1 3985 4517 -2440 1844 186 53 8 chrX 170353601 170353962 -6620178 + MSTD LTR MaLR 1 377 -19 803 175 0 76 chrX 170353992 170354126 -6620014 + L1ME1 LINE L1 5701 5813 -351 2100 179 6 3 chrX 170354126 170354490 -6619650 + MLT1A1 LTR MaLR 1 365 0 803 175 0 76 chrX 170354490 170354578 -6619562 + L1ME1 LINE L1 5813 5906 -258 31856 104 11 56 chrX 170354582 170357190 -6616950 + L1PA7 LINE L1 2 2724 -3430 225 65 0 0 chrX 170357190 170357221 -6616919 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 31856 104 11 56 chrX 170357221 170361056 -6613084 + L1PA7 LINE L1 2724 6152 -2 534 269 46 32 chrX 170361052 170361271 -6612869 + L1ME1 LINE L1 5891 6112 -54 * 531 220 75 6 chrX 170361164 170361323 -6612817 + L1MA10 LINE L1 6165 6334 0 * 4312 242 75 22 chrX 170361331 170361354 -6612786 + L1MC2 LINE L1 3504 3524 -2622 2967 65 5 27 chrX 170361354 170361766 -6612374 + L1PA8A LINE L1 5729 6131 0 4312 242 75 22 chrX 170361766 170363456 -6610684 + L1MC2 LINE L1 3524 5349 -797 4445 148 16 1 chrX 170363457 170364225 -6609915 + L1MC2 LINE L1 5550 6328 -16 255 282 35 0 chrX 170365202 170365287 -6608853 - L1MC4a LINE L1 -1647 6161 6074 313 257 0 29 chrX 170366704 170366774 -6607366 + L2 LINE L2 3205 3272 0 283 194 0 0 chrX 170367692 170367754 -6606386 + L1MA9 LINE L1 6213 6274 -38 226 209 0 0 chrX 170368366 170368409 -6605731 + (CA)n Simple_repeat Simple_repeat 1 43 0 727 232 17 17 chrX 170368486 170368663 -6605477 - MER5B DNA MER1_type -1 177 1 1833 68 17 0 chrX 170369244 170369480 -6604660 + L1PA7 LINE L1 5912 6151 -3 25 0 0 0 chrX 170369752 170369777 -6604363 + AT_rich Low_complexity Low_complexity 1 25 0 273 29 0 0 chrX 170371941 170371975 -6602165 + (TC)n Simple_repeat Simple_repeat 1 34 0 933 206 6 0 chrX 170372162 170372327 -6601813 - MER58A DNA MER1_type -40 184 19 242 167 17 0 chrX 170372958 170373018 -6601122 + CT-rich Low_complexity Low_complexity 1 61 0 2488 200 60 15 chrX 170375188 170375932 -6598208 - MER21B LTR ERV1 -52 811 1 417 296 104 0 chrX 170377190 170377305 -6596835 + L2 LINE L2 3187 3313 0 717 221 99 41 chrX 170378367 170378539 -6595601 + MER45 DNA AcHobo 7 188 -1393 573 196 107 0 chrX 170378537 170378649 -6595491 + MER45 DNA AcHobo 1458 1581 0 * 21 36 0 0 chrX 170379359 170379387 -6594753 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chrX 170379609 170379635 -6594505 + AT_rich Low_complexity Low_complexity 1 26 0 183 293 41 89 chrX 170380071 170380194 -6593946 + L2 LINE L2 2420 2536 -778 365 286 0 0 chrX 170380595 170380679 -6593461 - MIR SINE MIR -20 242 159 379 299 36 29 chrX 170381527 170381664 -6592476 + L2 LINE L2 2852 2989 -283 216 0 0 0 chrX 170382643 170382667 -6591473 + (TC)n Simple_repeat Simple_repeat 2 25 0 1607 291 76 23 chrX 170383538 170384356 -6589784 + L1ME2 LINE L1 5296 6156 -8 757 286 120 26 chrX 170384975 170385440 -6588700 - L1ME3A LINE L1 -222 5948 5440 529 320 68 28 chrX 170385445 170385991 -6588149 - L1ME3A LINE L1 -757 5389 4822 21 57 0 0 chrX 170386524 170386559 -6587581 + AT_rich Low_complexity Low_complexity 1 35 0 244 140 53 0 chrX 170386573 170386630 -6587510 + (TA)n Simple_repeat Simple_repeat 1 60 0 348 139 57 0 chrX 170386782 170386940 -6587200 + (TA)n Simple_repeat Simple_repeat 1 167 0 29 0 0 0 chrX 170386945 170386974 -6587166 + AT_rich Low_complexity Low_complexity 1 29 0 569 126 67 0 chrX 170386980 170387315 -6586825 + (TA)n Simple_repeat Simple_repeat 1 357 0 501 92 92 0 chrX 170388311 170388475 -6585665 + (TA)n Simple_repeat Simple_repeat 1 179 0 522 61 63 40 chrX 170388499 170388848 -6585292 + (TA)n Simple_repeat Simple_repeat 1 357 0 585 74 51 34 chrX 170388885 170389061 -6585079 + (TA)n Simple_repeat Simple_repeat 2 180 0 29 47 0 0 chrX 170389061 170389104 -6585036 + AT_rich Low_complexity Low_complexity 1 43 0 2005 154 43 6 chrX 170389104 170389449 -6584691 - L1M2 LINE L1 -521 5791 5434 4881 160 14 28 chrX 170389481 170389895 -6584245 - L1MA7 LINE L1 -1 6290 5872 405 0 0 0 chrX 170389895 170389940 -6584200 + (TA)n Simple_repeat Simple_repeat 2 46 0 4881 160 14 28 chrX 170389940 170390949 -6583191 - L1MA7 LINE L1 -419 5872 4850 798 102 86 0 chrX 170390949 170391077 -6583063 - MER85 DNA T2_type 0 139 1 4881 160 14 28 chrX 170391077 170391176 -6582964 - L1MA7 LINE L1 -1441 4850 4751 186 43 0 0 chrX 170391176 170391199 -6582941 + (TG)n Simple_repeat Simple_repeat 1 23 0 4881 160 14 28 chrX 170391199 170391445 -6582695 - L1MA7 LINE L1 -1540 4751 4444 225 205 0 0 chrX 170391445 170391484 -6582656 + tRNA-Val-GTG tRNA tRNA 2 40 -36 1568 183 37 20 chrX 170391484 170391872 -6582268 - L1M2 LINE L1 -732 5436 5048 * 6449 171 28 5 chrX 170391860 170393128 -6581012 - L1M2 LINE L1 -1336 4810 3513 835 226 5 41 chrX 170393494 170393689 -6580451 - MER5A DNA MER1_type -1 188 1 1940 122 0 27 chrX 170394676 170394970 -6579170 - AluSx SINE Alu -13 299 14 6820 124 25 2 chrX 170396086 170397659 -6576481 - L1MA3 LINE L1 0 6305 4700 284 219 90 80 chrX 170398512 170398713 -6575427 + L2 LINE L2 3111 3313 0 2360 68 3 13 chrX 170399392 170399701 -6574439 + AluY SINE Alu 1 306 -5 377 308 70 7 chrX 170400269 170400412 -6573728 - MIR3 SINE MIR -14 194 43 444 298 24 0 chrX 170400458 170400582 -6573558 + MIR SINE MIR 31 157 -105 274 247 106 12 chrX 170401160 170401245 -6572895 - L3 LINE CR1 -540 1037 945 414 321 43 73 chrX 170401245 170401547 -6572593 - L3 LINE CR1 -815 762 470 290 67 0 44 chrX 170401964 170402009 -6572131 + Alu SINE Alu 249 291 -11 690 216 75 61 chrX 170402448 170402658 -6571482 + LTR50 LTR ERVL 1 212 -309 * 886 274 205 3 chrX 170402654 170403044 -6571096 + LTR50 LTR ERVL 327 795 0 278 276 68 53 chrX 170403059 170403229 -6570911 - MIR SINE MIR -67 141 13 253 319 21 61 chrX 170403629 170403817 -6570323 + MIR SINE MIR 10 187 -75 34 55 0 0 chrX 170405042 170405097 -6569043 + AT_rich Low_complexity Low_complexity 1 55 0 807 273 36 24 chrX 170405375 170405624 -6568516 - MIR SINE MIR -5 257 6 227 270 86 86 chrX 170406148 170406311 -6567829 - MIR3 SINE MIR -39 169 7 348 344 72 0 chrX 170408407 170408532 -6565608 - L2 LINE L2 0 3272 3139 1072 307 18 12 chrX 170408576 170408908 -6565232 - LTR16A LTR ERVL 0 450 117 195 71 0 0 chrX 170410082 170410110 -6564030 - L2 LINE L2 -2 3311 3284 257 264 0 120 chrX 170410111 170410236 -6563904 - LTR16A1 LTR ERVL -1 456 347 409 312 60 64 chrX 170410496 170410778 -6563362 - L2 LINE L2 -25 3288 3008 528 283 159 32 chrX 170411158 170411466 -6562674 + L1MEd LINE L1 474 820 -5299 24 0 0 0 chrX 170411617 170411641 -6562499 + AT_rich Low_complexity Low_complexity 1 24 0 2381 55 19 3 chrX 170411646 170411958 -6562182 - L1PA12 LINE L1 0 6168 5852 2349 211 41 8 chrX 170412379 170412914 -6561226 + MER90 LTR ERV1 62 614 0 409 296 52 7 chrX 170413346 170413481 -6560659 + MLT1J LTR MaLR 7 147 -364 897 323 37 56 chrX 170413508 170413939 -6560201 + L3 LINE CR1 1152 1574 -3 317 232 21 63 chrX 170414870 170414965 -6559175 + LTR33A LTR ERVL 24 136 -387 314 203 29 74 chrX 170415053 170415175 -6558965 + LTR33A LTR ERVL 406 620 -8 219 318 65 9 chrX 170417015 170417122 -6557018 - MIR SINE MIR -10 252 140 45 69 0 0 chrX 170417764 170417851 -6556289 + AT_rich Low_complexity Low_complexity 1 87 0 507 17 0 0 chrX 170418949 170419009 -6555131 + (TG)n Simple_repeat Simple_repeat 2 61 0 243 364 6 34 chrX 170419162 170419338 -6554802 - HAL1 LINE L1 -2334 173 3 201 328 0 0 chrX 170419510 170419568 -6554572 + CT-rich Low_complexity Low_complexity 3 60 0 671 223 0 0 chrX 170419694 170419815 -6554325 + FLAM_A SINE Alu 1 121 -12 22 70 0 0 chrX 170419823 170419866 -6554274 + AT_rich Low_complexity Low_complexity 1 43 0 243 188 58 14 chrX 170419984 170420053 -6554087 + L1ME LINE L1 5750 5821 -349 207 114 0 0 chrX 170420222 170420257 -6553883 + (T)n Simple_repeat Simple_repeat 1 35 0 4812 190 13 9 chrX 170620903 170621770 -6352370 + L1 LINE L1 3977 4850 -1296 2123 120 3 7 chrX 170621770 170622078 -6352062 - AluSg SINE Alu -3 307 1 4812 190 13 9 chrX 170622078 170622190 -6351950 + L1 LINE L1 4850 4960 -1186 1204 249 7 83 chrX 170623000 170623320 -6350820 + MLT1E2 LTR MaLR 1 281 -345 2029 151 34 17 chrX 170623320 170623678 -6350462 - MLT1A1 LTR MaLR -1 364 1 1204 249 7 83 chrX 170623678 170623790 -6350350 + MLT1E2 LTR MaLR 281 400 -226 523 148 9 9 chrX 170623899 170624007 -6350133 + G-rich Low_complexity Low_complexity 5 112 0 30 69 0 0 chrX 170625492 170625550 -6348590 + AT_rich Low_complexity Low_complexity 1 58 0 192 276 40 53 chrX 170625928 170626004 -6348136 + MIR SINE MIR 56 130 -132 2307 227 48 33 chrX 170627499 170628292 -6345848 - L1M4 LINE L1 -4906 1636 832 256 293 24 12 chrX 170628440 170628522 -6345618 - L1M4 LINE L1 -5711 935 853 3432 151 33 14 chrX 170628526 170629189 -6344951 - L1MA8 LINE L1 0 6291 5616 25 31 0 0 chrX 170629315 170629347 -6344793 + AT_rich Low_complexity Low_complexity 1 32 0 800 208 150 48 chrX 170631191 170631389 -6342751 - L1MC4 LINE L1 -18 8024 7781 1445 97 69 5 chrX 170631389 170631605 -6342535 + MER30 DNA MER1_type 1 230 0 800 208 150 48 chrX 170631605 170631719 -6342421 - L1MC4 LINE L1 -261 7781 7680 2427 67 0 0 chrX 170631729 170632026 -6342114 + AluY SINE Alu 2 298 -13 1189 175 14 27 chrX 170632193 170632416 -6341724 + AluJo SINE Alu 58 277 -35 1254 136 18 9 chrX 170632431 170632659 -6341481 + L1PA15 LINE L1 5936 6165 0 1085 191 14 0 chrX 170632664 170632879 -6341261 + L1M1 LINE L1 5495 5712 -591 11536 214 21 17 chrX 170632902 170635678 -6338462 + L1P LINE L1 1982 4770 -1376 2215 71 6 56 chrX 170635751 170636075 -6338065 + AluY SINE Alu 1 308 -3 505 144 206 0 chrX 170637171 170637289 -6336851 - L1MC4 LINE L1 -221 7774 7543 26 0 0 0 chrX 170638012 170638038 -6336102 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chrX 170639025 170639047 -6335093 + AT_rich Low_complexity Low_complexity 1 22 0 318 106 0 0 chrX 170639918 170639965 -6334175 + (T)n Simple_repeat Simple_repeat 1 47 0 4737 216 16 5 chrX 170639989 170641226 -6332914 + L1 LINE L1 2479 3802 -2344 13416 194 27 14 chrX 170641725 170642638 -6331502 + L1MA1 LINE L1 2936 3836 -3885 2478 54 0 0 chrX 170642638 170642934 -6331206 - AluY SINE Alu -15 296 1 13416 194 27 14 chrX 170642934 170645682 -6328458 + L1MA1 LINE L1 3836 6676 -1045 2150 152 3 0 chrX 170645682 170646018 -6328122 - MER1B DNA MER1_type 0 337 1 13416 194 27 14 chrX 170646018 170646789 -6327351 + L1MA1 LINE L1 6676 7436 -285 789 213 38 19 chrX 170646794 170647005 -6327135 - L1M1 LINE L1 -4231 3334 3120 24 0 0 0 chrX 170647151 170647175 -6326965 + AT_rich Low_complexity Low_complexity 1 24 0 1823 328 17 26 chrX 170648331 170649026 -6325114 + L1 LINE L1 1 689 -6479 4259 246 47 4 chrX 170649473 170650646 -6323494 + L1 LINE L1 1768 2990 -4178 7321 181 13 8 chrX 170650763 170652237 -6321903 + L1 LINE L1 4862 6342 -825 367 19 19 0 chrX 170652376 170652428 -6321712 + L1MA3 LINE L1 6253 6305 0 23 54 0 0 chrX 170652714 170652751 -6321389 + AT_rich Low_complexity Low_complexity 1 37 0 414 244 102 24 chrX 170653185 170653312 -6320828 - L2 LINE L2 0 3313 3177 3043 114 7 2 chrX 170653313 170653759 -6320381 + MER75 DNA T2_type 67 514 0 635 268 31 0 chrX 170653759 170653953 -6320187 + L1P LINE L1 2360 2559 -3587 1562 245 11 3 chrX 170653962 170654341 -6319799 + L1 LINE L1 4181 4562 -1584 1113 249 52 8 chrX 170654336 170654651 -6319489 - L1ME1 LINE L1 -16 6150 5824 * 5534 165 17 32 chrX 170654799 170656440 -6317700 + L1PA16 LINE L1 4551 6166 0 684 157 28 24 chrX 170656632 170656873 -6317267 + GA-rich Low_complexity Low_complexity 1 242 0 562 76 0 25 chrX 170656873 170656952 -6317188 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 429 20 0 0 chrX 170657811 170657861 -6316279 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 320 342 179 4 chrX 170657878 170658118 -6316022 - L2 LINE L2 -40 3273 2992 372 397 22 0 chrX 170658376 170658512 -6315628 - L2 LINE L2 -13 3259 3121 22 56 0 0 chrX 170658529 170658565 -6315575 + AT_rich Low_complexity Low_complexity 1 36 0 28 86 0 0 chrX 170658815 170658885 -6315255 + AT_rich Low_complexity Low_complexity 1 70 0 47 67 0 0 chrX 170659263 170659352 -6314788 + AT_rich Low_complexity Low_complexity 1 89 0 237 220 0 20 chrX 170659628 170659678 -6314462 + MER94 DNA DNA 61 109 -25 273 291 228 0 chrX 170659992 170660119 -6314021 + MER5A DNA MER1_type 34 189 0 2919 99 20 20 chrX 170660237 170660681 -6313459 - MLT2A1 LTR ERVL 0 444 1 27 29 0 0 chrX 170661089 170661123 -6313017 + AT_rich Low_complexity Low_complexity 1 34 0 237 263 12 12 chrX 170661542 170661622 -6312518 + L1MC4 LINE L1 6619 6698 -1344 28 29 0 0 chrX 170661739 170661774 -6312366 + AT_rich Low_complexity Low_complexity 1 35 0 228 255 0 0 chrX 170661874 170661921 -6312219 - MER5A DNA MER1_type 0 189 143 1199 221 10 24 chrX 170661957 170662246 -6311894 + L1MCa LINE L1 414 698 -5728 * 4314 237 72 91 chrX 170662234 170663387 -6310753 + L1M4 LINE L1 3193 4367 -1779 601 172 33 57 chrX 170663387 170663509 -6310631 + AluJb SINE Alu 157 275 -37 423 0 0 0 chrX 170663510 170663557 -6310583 + (TG)n Simple_repeat Simple_repeat 2 48 0 4314 237 72 91 chrX 170663557 170664430 -6309710 + L1M4 LINE L1 4366 5300 -846 8080 236 45 50 chrX 170664477 170668662 -6305478 + L1MB1 LINE L1 2461 6447 -1 668 281 0 0 chrX 170668682 170668828 -6305312 - MER5A DNA MER1_type -36 153 8 689 337 47 56 chrX 170670814 170671123 -6303017 + L2 LINE L2 2510 2820 -493 2497 48 0 0 chrX 170671123 170671413 -6302727 + AluY SINE Alu 1 290 -21 689 337 47 56 chrX 170671413 170671897 -6302243 + L2 LINE L2 2820 3305 -8 1374 303 83 23 chrX 170671962 170672477 -6301663 - MLT1H1 LTR MaLR 0 555 10 24 20 0 60 chrX 170673257 170673307 -6300833 + AT_rich Low_complexity Low_complexity 1 47 0 230 279 192 0 chrX 170673313 170673417 -6300723 + MIR3 SINE MIR 50 173 -35 10579 233 53 17 chrX 170673591 170676163 -6297977 + L1MA3 LINE L1 11 2675 -4174 2233 76 7 33 chrX 170676291 170676594 -6297546 - AluSc SINE Alu -14 295 1 5852 161 12 14 chrX 170676595 170678270 -6295870 + L1MA3 LINE L1 5333 7003 -4 1163 248 55 3 chrX 170678293 170678656 -6295484 + L1M1 LINE L1 3159 3540 -3308 250 303 29 23 chrX 170678657 170678832 -6295308 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 9401 204 30 40 chrX 170678846 170681326 -6292814 + L1M1 LINE L1 3551 6053 -872 2010 139 0 25 chrX 170681326 170681643 -6292497 + AluSx SINE Alu 1 309 -3 9401 204 30 40 chrX 170681643 170681719 -6292421 + L1M1 LINE L1 6053 6094 -831 2279 96 0 0 chrX 170681719 170682010 -6292130 + AluSg SINE Alu 1 291 -19 9401 204 30 40 chrX 170682010 170682092 -6292048 + L1M1 LINE L1 6094 6175 -750 498 149 0 23 chrX 170682099 170682186 -6291954 - L1P LINE L1 -1365 4781 4697 1718 98 53 8 chrX 170682193 170682457 -6291683 - L1PA10 LINE L1 -5 6163 5888 4285 100 36 0 chrX 170682558 170683478 -6290662 - L1PA10 LINE L1 -295 5873 4922 632 188 73 18 chrX 170683485 170683650 -6290490 - L1P LINE L1 -1459 4687 4514 * 3085 167 20 7 chrX 170683641 170684640 -6289500 + L1P4 LINE L1 4800 5809 -356 * 8564 181 22 23 chrX 170684620 170686068 -6288072 + L1MA1 LINE L1 3372 4819 -1483 238 122 0 0 chrX 170686068 170686109 -6288031 - Alu SINE Alu -258 42 2 8564 181 22 23 chrX 170686109 170687549 -6286591 + L1MA1 LINE L1 4819 6298 -4 700 335 29 14 chrX 170689260 170689538 -6284602 + LTR16C LTR ERVL 180 461 -30 24080 162 21 36 chrX 170689724 170696274 -6277866 + L1PA10 LINE L1 1 6481 -2 250 316 11 0 chrX 170696380 170696475 -6277665 - MER103 DNA DNA -14 152 57 285 306 27 9 chrX 170697632 170697743 -6276397 + MIR SINE MIR 148 260 -2 210 394 0 14 chrX 170697770 170697841 -6276299 + L2 LINE L2 3106 3175 -97 2219 112 3 0 chrX 170699038 170699333 -6274807 + AluSq SINE Alu 2 297 -16 1808 183 16 55 chrX 170699431 170699798 -6274342 - MSTB LTR MaLR -73 353 1 2212 182 61 26 chrX 170699798 170699862 -6274278 + L1MA9 LINE L1 5713 5773 -539 198 71 0 0 chrX 170699862 170699890 -6274250 + (TA)n Simple_repeat Simple_repeat 1 28 0 2212 182 61 26 chrX 170699890 170700049 -6274091 + L1MA9 LINE L1 5773 5925 -387 2047 138 0 3 chrX 170700049 170700354 -6273786 + AluSx SINE Alu 2 305 -7 2212 182 61 26 chrX 170700354 170700667 -6273473 + L1MA9 LINE L1 5925 6269 -43 2175 252 69 23 chrX 170700733 170701961 -6272179 + L1M4c LINE L1 2017 3318 -3064 3803 214 28 0 chrX 170701971 170702677 -6271463 + L1P4 LINE L1 2 727 -6060 1776 179 0 6 chrX 170702727 170703426 -6270714 + L1P4 LINE L1 874 1710 -5077 * 6440 170 41 2 chrX 170703418 170704860 -6269280 + L1P4 LINE L1 4650 6154 -665 2439 264 31 24 chrX 170704863 170705310 -6268830 + L1 LINE L1 2572 3014 -3132 1734 159 70 28 chrX 170705310 170705669 -6268471 - THE1C LTR MaLR -1 374 1 2439 264 31 24 chrX 170705669 170706223 -6267917 + L1 LINE L1 3014 3580 -2566 26 30 0 0 chrX 170707318 170707351 -6266789 + AT_rich Low_complexity Low_complexity 1 33 0 3784 272 103 20 chrX 170707981 170709387 -6264753 + L1MA1 LINE L1 1 1523 -5686 1515 110 5 5 chrX 170709391 170709610 -6264530 + AluSg/x SINE Alu 88 306 -6 720 176 11 5 chrX 170709615 170709803 -6264337 + L1MA1 LINE L1 2127 2315 -4894 15345 188 21 36 chrX 170709816 170712447 -6261693 + L1M1 LINE L1 9 2678 -4887 192 40 0 0 chrX 170712447 170712472 -6261668 + (TTA)n Simple_repeat Simple_repeat 3 27 0 668 38 0 0 chrX 170712472 170712551 -6261589 - L1PA4 LINE L1 -18 6137 6059 15345 188 21 36 chrX 170712551 170712647 -6261493 + L1M1 LINE L1 2677 2773 -4792 2407 81 3 0 chrX 170712647 170712944 -6261196 + AluSp SINE Alu 1 298 -15 15345 188 21 36 chrX 170712944 170713308 -6260832 + L1M1 LINE L1 2773 3056 -4509 6315 164 19 8 chrX 170713308 170715500 -6258640 + L1MA1 LINE L1 4991 7205 -159 3663 242 39 20 chrX 170715600 170717699 -6256441 + L1M1 LINE L1 3078 5207 -2358 5947 204 48 2 chrX 170717712 170718893 -6255247 + L1PBa LINE L1 3 1238 -5625 436 263 9 94 chrX 170718893 170719106 -6255034 + Charlie2 DNA MER1_type 28 222 -2640 432 238 9 0 chrX 170719196 170719301 -6254839 + Charlie2 DNA MER1_type 1856 1961 -901 2434 58 0 16 chrX 170719310 170719618 -6254522 + AluY SINE Alu 1 303 -8 275 200 78 44 chrX 170719618 170719708 -6254432 + Charlie2 DNA MER1_type 2037 2129 -733 1180 248 49 29 chrX 170719813 170720361 -6253779 + Charlie2 DNA MER1_type 2287 2845 -17 1046 196 73 7 chrX 170722184 170722459 -6251681 - L1MA4 LINE L1 -7 6293 6001 190 350 117 0 chrX 170722542 170722662 -6251478 - MIR SINE MIR -15 247 114 648 168 0 0 chrX 170723713 170723826 -6250314 + MER3 DNA MER1_type 97 209 0 234 380 23 8 chrX 170723853 170723982 -6250158 - MLT1J1 LTR MaLR -224 222 92 343 271 18 113 chrX 170724205 170724426 -6249714 - MER112 DNA MER1_type -54 206 7 23 0 0 0 chrX 170724568 170724591 -6249549 + AT_rich Low_complexity Low_complexity 1 23 0 5303 104 8 7 chrX 170724591 170725357 -6248783 - L1PA13 LINE L1 -4 6159 5393 3551 146 32 2 chrX 170725355 170725985 -6248155 + L1PA13 LINE L1 4715 5363 -783 * 331 68 34 0 chrX 170726081 170726140 -6248000 + (TG)n Simple_repeat Simple_repeat 2 62 0 8520 143 45 16 chrX 170726513 170729028 -6245112 + L1PB1 LINE L1 6 2971 -3892 3832 112 0 0 chrX 170729082 170729732 -6244408 + L1PB1 LINE L1 5857 6506 -361 222 198 23 23 chrX 170729784 170729845 -6244295 + (TATAA)n Simple_repeat Simple_repeat 5 68 -22 2110 142 22 6 chrX 170729845 170730205 -6243935 + L1PB1 LINE L1 6500 6865 -2 222 198 23 23 chrX 170730205 170730229 -6243911 + (TATAA)n Simple_repeat Simple_repeat 67 90 0 185 333 24 72 chrX 170730455 170730662 -6243478 + L2 LINE L2 2734 2930 -384 2101 114 0 3 chrX 170730695 170731003 -6243137 - AluSx SINE Alu -5 307 1 1055 276 35 81 chrX 170731109 170731823 -6242317 - L2 LINE L2 -1 3312 2636 245 284 0 0 chrX 170731888 170731955 -6242185 + (TA)n Simple_repeat Simple_repeat 1 67 0 243 279 130 19 chrX 170731956 170732110 -6242030 + MER112 DNA MER1_type 81 251 -9 660 326 35 38 chrX 170732112 170732456 -6241684 - L2 LINE L2 -684 2630 2288 269 241 170 57 chrX 170732616 170732757 -6241383 + L2 LINE L2 3140 3296 -17 1040 306 79 30 chrX 170733013 170733439 -6240701 + MLT1G1 LTR MaLR 93 580 -15 289 254 0 0 chrX 170733439 170733506 -6240634 + LTR16C LTR ERVL 403 469 -22 3009 41 3 3 chrX 170734971 170735340 -6238800 + L1PA7 LINE L1 5782 6150 -4 1269 296 44 69 chrX 170736082 170736860 -6237280 - L1ME3 LINE L1 -21 6141 5384 592 207 0 9 chrX 170736860 170736976 -6237164 - FLAM_A SINE Alu -14 128 14 340 254 74 66 chrX 170736990 170737246 -6236894 - L1ME3 LINE L1 -758 5388 5131 1515 288 60 10 chrX 170737655 170738575 -6235565 - L1ME3 LINE L1 -965 5181 4143 192 40 0 0 chrX 170738677 170738702 -6235438 + (TG)n Simple_repeat Simple_repeat 1 25 0 5987 100 7 0 chrX 170738820 170739687 -6234453 + L1MA3 LINE L1 5433 6305 0 333 338 91 20 chrX 170739890 170740284 -6233856 - L1MC/D LINE L1 -2055 5753 5332 1914 138 34 0 chrX 170740466 170740764 -6233376 - AluSx SINE Alu -4 308 1 231 162 0 0 chrX 170741575 170741612 -6232528 - MER5B DNA MER1_type 0 178 142 * 482 201 45 37 chrX 170741579 170741713 -6232427 + MER5B DNA MER1_type 44 178 0 213 226 0 0 chrX 170744753 170744806 -6229334 + (TA)n Simple_repeat Simple_repeat 2 54 0 660 280 10 35 chrX 170747161 170747272 -6226868 - MER63A DNA MER1_type -1479 209 104 2011 121 67 14 chrX 170747272 170747628 -6226512 + THE1C LTR MaLR 1 375 0 660 280 10 35 chrX 170747628 170747716 -6226424 - MER63A DNA MER1_type -1584 104 15 350 294 86 31 chrX 170749273 170749436 -6224704 - MER5B DNA MER1_type 0 178 7 223 273 30 0 chrX 170750315 170750381 -6223759 + CT-rich Low_complexity Low_complexity 5 72 0 802 230 11 21 chrX 170750721 170750912 -6223228 - MER5A DNA MER1_type 0 189 1 1049 180 5 14 chrX 170751075 170751286 -6222854 + L1PA16 LINE L1 5955 6163 -3 21 0 0 0 chrX 170751286 170751307 -6222833 + AT_rich Low_complexity Low_complexity 1 21 0 1302 37 0 6 chrX 170751307 170751460 -6222680 + L1PA5 LINE L1 5992 6145 -9 189 74 0 0 chrX 170751460 170751487 -6222653 + (TA)n Simple_repeat Simple_repeat 2 28 0 367 260 82 7 chrX 170752069 170752215 -6221925 + MER103 DNA DNA 7 163 -3 265 289 22 22 chrX 170752572 170752752 -6221388 + (TA)n Simple_repeat Simple_repeat 1 180 0 248 94 0 0 chrX 170752790 170752842 -6221298 + Alu SINE Alu 253 304 0 21 0 0 0 chrX 170753706 170753727 -6220413 + AT_rich Low_complexity Low_complexity 1 21 0 2025 116 70 20 chrX 170753965 170754320 -6219820 + THE1C LTR MaLR 3 375 0 4892 165 38 42 chrX 170755681 170756201 -6217939 - L1MA10 LINE L1 -3 6331 5811 228 35 0 0 chrX 170756201 170756230 -6217910 + (TC)n Simple_repeat Simple_repeat 2 30 0 4892 165 38 42 chrX 170756230 170756760 -6217380 - L1MA10 LINE L1 -523 5811 5285 5449 136 13 19 chrX 170756841 170757834 -6216306 - L1PB3 LINE L1 -1 6153 5161 208 128 32 64 chrX 170758208 170758302 -6215838 + (TA)n Simple_repeat Simple_repeat 1 91 0 1205 310 53 7 chrX 170758576 170758992 -6215148 + LTR16A LTR ERVL 16 450 0 23 0 0 0 chrX 170759413 170759436 -6214704 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chrX 170760116 170760158 -6213982 + AT_rich Low_complexity Low_complexity 1 42 0 2219 263 35 39 chrX 170760911 170761661 -6212479 - MER99 DNA DNA -2 826 80 511 286 0 0 chrX 170761655 170761788 -6212352 - MER99 DNA DNA -691 137 5 * 580 116 24 2 chrX 170764559 170764661 -6209479 - L1ME LINE L1 -497 5673 5569 3568 75 18 14 chrX 170764661 170765154 -6208986 + L1PA13 LINE L1 5663 6158 -5 2058 128 10 7 chrX 170765156 170765452 -6208688 + AluSx SINE Alu 1 297 -15 1520 268 108 62 chrX 170765885 170766355 -6207785 - HAL1 LINE L1 -1078 1429 982 1740 189 3 3 chrX 170766355 170766667 -6207473 - AluJb SINE Alu 0 312 1 1520 268 108 62 chrX 170766667 170767337 -6206803 - HAL1 LINE L1 -1525 982 237 301 286 104 52 chrX 170767431 170767585 -6206555 - HAL1 LINE L1 -2336 171 10 459 318 91 15 chrX 170768832 170769030 -6205110 - MIR SINE MIR -37 225 13 23 0 0 0 chrX 170769881 170769904 -6204236 + AT_rich Low_complexity Low_complexity 1 23 0 294 171 26 34 chrX 170772503 170772620 -6201520 + CT-rich Low_complexity Low_complexity 6 121 0 466 291 127 86 chrX 170772646 170772800 -6201340 - MLT1L LTR MaLR -204 411 265 1237 209 0 95 chrX 170772800 170772956 -6201184 - AluJo SINE Alu -14 288 119 339 25 0 0 chrX 170772956 170772996 -6201144 + (TG)n Simple_repeat Simple_repeat 2 41 0 1237 209 0 95 chrX 170772996 170773013 -6201127 - AluJo SINE Alu -183 119 102 2203 99 7 3 chrX 170773013 170773307 -6200833 - AluSq SINE Alu -17 296 2 1237 209 0 95 chrX 170773307 170773448 -6200692 - AluJo SINE Alu -200 102 3 466 291 127 86 chrX 170773448 170773688 -6200452 - MLT1L LTR MaLR -350 265 1 360 331 72 7 chrX 170774015 170774154 -6199986 - MER5A DNA MER1_type -1 188 41 366 349 11 5 chrX 170775295 170775484 -6198656 + Charlie8 DNA MER1_type 74 263 -2154 2769 173 2 31 chrX 170775735 170776214 -6197926 + MLT2B2 LTR ERVL 1 465 -50 3543 144 7 5 chrX 170776232 170776809 -6197331 - HSMAR2 DNA Mariner -121 1181 604 754 168 0 8 chrX 170776809 170776940 -6197200 - AluSc SINE Alu -11 298 169 3563 155 3 7 chrX 170776940 170777545 -6196595 - HSMAR2 DNA Mariner -694 608 6 260 241 0 0 chrX 170777627 170777685 -6196455 - MLT2B2 LTR ERVL 0 414 357 186 133 0 0 chrX 170777685 170777715 -6196425 + (TGGA)n Simple_repeat Simple_repeat 2 31 0 1154 240 106 38 chrX 170777736 170778160 -6195980 - MLT2B2 LTR ERVL -38 456 18 276 273 13 13 chrX 170778211 170778288 -6195852 + MIR SINE MIR 186 262 0 374 167 0 33 chrX 170779314 170779404 -6194736 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 231 333 70 9 chrX 170779517 170779631 -6194509 + MIR SINE MIR 71 191 -71 21 36 0 0 chrX 170779633 170779661 -6194479 + AT_rich Low_complexity Low_complexity 1 28 0 312 308 60 13 chrX 170779684 170779817 -6194323 - MIR SINE MIR -64 144 3 937 228 35 22 chrX 170780790 170781018 -6193122 + L1MA6 LINE L1 281 511 -7054 * 1043 80 0 0 chrX 170780996 170781146 -6192994 + L1M1 LINE L1 2974 3123 -4442 321 220 0 0 chrX 170781141 170781200 -6192940 + L1MA6 LINE L1 495 553 -7012 * 8727 171 35 14 chrX 170781265 170784715 -6189425 + L1MA6 LINE L1 2003 5525 -2040 7210 119 84 0 chrX 170784738 170786084 -6188056 - L1PA4 LINE L1 0 6155 4670 5114 176 51 49 chrX 170786082 170787090 -6187050 + L1MA6 LINE L1 5505 6510 -1209 * 2315 69 20 0 chrX 170787090 170787395 -6186745 + AluY SINE Alu 1 311 0 5114 176 51 49 chrX 170787395 170788598 -6185542 + L1MA6 LINE L1 6510 7711 -8 451 285 38 19 chrX 170789564 170789722 -6184418 + MIR SINE MIR 90 250 -12 198 310 52 0 chrX 170789767 170789825 -6184315 + MIR SINE MIR 64 124 -84 1028 17 0 0 chrX 170789834 170789953 -6184187 + L1PA5 LINE L1 6030 6148 -6 929 260 25 70 chrX 170789965 170790323 -6183817 - L1M4b LINE L1 -5481 1378 1037 3180 135 9 86 chrX 170790388 170790499 -6183641 - L1M LINE L1 -745 5401 5283 1106 136 0 6 chrX 170790499 170790675 -6183465 - L1MA2 LINE L1 -7 6297 6123 3180 135 9 86 chrX 170790675 170790735 -6183405 - L1M LINE L1 -863 5283 5220 3219 101 11 0 chrX 170790735 170791202 -6182938 - L1MA2 LINE L1 -4 6300 5829 3180 135 9 86 chrX 170791202 170791771 -6182369 - L1M LINE L1 -926 5220 4729 2715 50 6 0 chrX 170791874 170792216 -6181924 - L1P LINE L1 -1160 4986 4643 * 6381 171 17 10 chrX 170792210 170793654 -6180486 + L1M1 LINE L1 4104 5563 -739 1425 101 28 0 chrX 170793654 170793861 -6180279 + L1MA1 LINE L1 6080 6302 0 29 47 0 0 chrX 170793869 170793912 -6180228 + AT_rich Low_complexity Low_complexity 1 43 0 30 103 0 0 chrX 170794353 170794460 -6179680 + AT_rich Low_complexity Low_complexity 1 107 0 24 53 0 0 chrX 170795061 170795099 -6179041 + AT_rich Low_complexity Low_complexity 1 38 0 272 341 59 0 chrX 170795574 170795709 -6178431 - MIR SINE MIR -41 221 79 232 295 26 0 chrX 170795851 170795929 -6178211 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2200 138 5 19 chrX 170795933 170796311 -6177829 + THE1C LTR MaLR 3 375 0 27 0 0 0 chrX 170796892 170796919 -6177221 + AT_rich Low_complexity Low_complexity 1 27 0 35 0 0 0 chrX 170797139 170797174 -6176966 + AT_rich Low_complexity Low_complexity 1 35 0 22 70 0 0 chrX 170798421 170798464 -6175676 + AT_rich Low_complexity Low_complexity 1 43 0 346 319 127 19 chrX 170799761 170799974 -6174166 - MIR SINE MIR -26 236 1 2678 106 30 2 chrX 170800462 170800866 -6173274 + L1PB1 LINE L1 5732 6146 -5 1442 251 71 3 chrX 170801147 170801731 -6172409 + MER69 DNA AcHobo 3 697 -1829 1151 229 155 5 chrX 170801735 170802115 -6172025 + MER69 DNA AcHobo 1451 1887 -639 2283 82 0 0 chrX 170802380 170802691 -6171449 - AluSc SINE Alu 0 311 1 13643 142 42 3 chrX 170803085 170805411 -6168729 - Tigger1 DNA MER2_type -2 2416 1 1931 131 3 3 chrX 170806725 170807007 -6167133 + AluSx SINE Alu 1 282 -30 23 0 0 0 chrX 170807337 170807360 -6166780 + AT_rich Low_complexity Low_complexity 1 23 0 258 339 51 15 chrX 170808153 170808348 -6165792 - L1M4 LINE L1 -1938 4208 4007 1925 123 49 0 chrX 170808991 170809276 -6164864 + AluSx SINE Alu 1 299 -13 4107 162 24 12 chrX 170810419 170811227 -6162913 - L1MA6 LINE L1 0 6300 5484 1376 111 14 0 chrX 170811298 170811506 -6162634 - L1PA10 LINE L1 -11 6157 5947 1913 81 0 0 chrX 170811506 170811753 -6162387 + L1PA10 LINE L1 5697 5943 -225 10622 171 36 13 chrX 170811769 170814301 -6159839 - L1MA6 LINE L1 -746 5400 2889 189 344 10 52 chrX 170815173 170815269 -6158871 + L2 LINE L2 2958 3049 -223 1378 197 123 3 chrX 170816795 170817095 -6157045 + MER2 DNA MER2_type 10 345 0 23 54 0 0 chrX 170819772 170819809 -6154331 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chrX 170820249 170820282 -6153858 + AT_rich Low_complexity Low_complexity 1 33 0 707 71 9 18 chrX 170820284 170820396 -6153744 - L1PA14 LINE L1 0 6161 6051 376 342 20 79 chrX 170820689 170821043 -6153097 - MLT1I LTR MaLR -17 392 60 22 56 0 0 chrX 170821049 170821085 -6153055 + AT_rich Low_complexity Low_complexity 1 36 0 642 304 45 62 chrX 170821535 170821887 -6152253 + MLT1H LTR MaLR 1 346 -203 227 139 0 0 chrX 170821891 170821927 -6152213 + MLT1H LTR MaLR 490 525 -30 25 0 0 0 chrX 170821993 170822018 -6152122 + AT_rich Low_complexity Low_complexity 1 25 0 1295 193 105 16 chrX 170822948 170823253 -6150887 - MER2 DNA MER2_type -1 344 13 2089 96 0 28 chrX 170823599 170823890 -6150250 - AluSg1 SINE Alu -26 283 1 1875 132 11 0 chrX 170824612 170824885 -6149255 + AluSx SINE Alu 1 276 -36 590 308 56 83 chrX 170825246 170825484 -6148656 + L1ME3A LINE L1 5695 5915 -251 898 149 17 11 chrX 170825484 170825658 -6148482 - L1MB4 LINE L1 -1 6179 6005 590 308 56 83 chrX 170825658 170825899 -6148241 + L1ME3A LINE L1 5915 6161 -5 1907 120 77 34 chrX 170826066 170826415 -6147725 + THE1B LTR MaLR 1 364 0 9909 115 4 0 chrX 170826415 170827807 -6146333 + THE1B-int LTR MaLR 1 1397 -183 3122 116 7 2 chrX 170827907 170828357 -6145783 + THE1B-int LTR MaLR 1129 1580 0 1388 139 58 42 chrX 170828357 170828616 -6145524 + THE1B LTR MaLR 1 263 -101 488 281 66 40 chrX 170828757 170828985 -6145155 - MLT1H LTR MaLR -261 288 55 603 248 97 41 chrX 170829030 170829051 -6145089 - L1ME1 LINE L1 -4 6162 6144 1656 148 14 40 chrX 170829051 170829348 -6144792 - AluSx SINE Alu -1 311 23 603 248 97 41 chrX 170829348 170829645 -6144495 - L1ME1 LINE L1 -22 6144 5826 528 285 6 17 chrX 170829653 170829732 -6144408 - L1ME1 LINE L1 -395 5771 5693 1171 197 44 9 chrX 170829732 170829960 -6144180 - MER46A DNA MER2_type 0 236 1 528 285 6 17 chrX 170829960 170830059 -6144081 - L1ME1 LINE L1 -473 5693 5595 244 176 22 33 chrX 170830135 170830226 -6143914 + CT-rich Low_complexity Low_complexity 3 92 0 868 238 37 29 chrX 170830255 170830930 -6143210 - L1M4 LINE L1 -2889 3755 2916 254 187 18 2 chrX 170830928 170831000 -6143140 - L1M4 LINE L1 -4602 1973 1483 * 581 272 8 59 chrX 170831094 170831348 -6142792 - L1M4 LINE L1 -6301 241 1 336 248 62 55 chrX 170831346 170831491 -6142649 - L1ME1 LINE L1 -944 5202 5057 * 32 57 0 0 chrX 170831913 170831966 -6142174 + AT_rich Low_complexity Low_complexity 1 53 0 25 51 0 0 chrX 170832224 170832263 -6141877 + AT_rich Low_complexity Low_complexity 1 39 0 573 322 88 4 chrX 170832334 170832561 -6141579 - MIR SINE MIR -15 247 2 260 274 71 9 chrX 170832564 170832677 -6141463 - L1ME LINE L1 -312 5809 5690 3268 122 71 2 chrX 170832947 170833480 -6140660 - L1MA1 LINE L1 0 6302 5733 2512 129 78 5 chrX 170833475 170833796 -6140344 + L1M1 LINE L1 5162 5532 -770 * 959 79 0 22 chrX 170833796 170833935 -6140205 + L1PA7 LINE L1 6019 6154 0 2512 129 78 5 chrX 170833935 170834126 -6140014 + L1M1 LINE L1 5532 5708 -594 10604 43 1 0 chrX 170834150 170835680 -6138460 - L1PA5 LINE L1 -540 5614 4084 4345 44 13 2 chrX 170835680 170836227 -6137913 + L1PA5 LINE L1 5599 6151 -3 453 170 9 19 chrX 170836913 170837019 -6137121 + L1MA3 LINE L1 6201 6305 0 2470 48 0 0 chrX 170837024 170837316 -6136824 - AluY SINE Alu -19 292 1 217 240 0 0 chrX 170837720 170837770 -6136370 + CT-rich Low_complexity Low_complexity 2 51 0 1192 320 28 25 chrX 170837773 170838578 -6135562 - L2 LINE L2 -8 3305 2500 4762 76 0 0 chrX 170839117 170839747 -6134393 - L1PA7 LINE L1 -1688 4458 3829 * 6197 69 20 9 chrX 170839745 170841075 -6133065 + L1PA7 LINE L1 4485 5826 -328 1465 145 130 15 chrX 170841075 170841337 -6132803 - AluSc SINE Alu -11 298 7 680 199 65 11 chrX 170841386 170841572 -6132568 - L1 LINE L1 -3544 3664 3469 * 8333 207 100 42 chrX 170841570 170841811 -6132329 - L1 LINE L1 -3950 3259 3033 207 0 0 0 chrX 170841811 170841834 -6132306 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8333 207 100 42 chrX 170841834 170842697 -6131443 - L1 LINE L1 -4176 3033 2221 4501 116 14 10 chrX 170842697 170843421 -6130719 - L1MA2 LINE L1 0 6304 5578 8333 207 100 42 chrX 170843421 170845495 -6128645 - L1 LINE L1 -4988 2221 1 2127 88 7 30 chrX 170845874 170846171 -6127969 + AluSx SINE Alu 1 290 -22 207 279 88 0 chrX 170846544 170846612 -6127528 - MIR SINE MIR -12 250 177 26 50 0 0 chrX 170847217 170847257 -6126883 + AT_rich Low_complexity Low_complexity 1 40 0 246 83 0 0 chrX 170847456 170847492 -6126648 - L1MA2 LINE L1 -304 6000 5965 1607 242 40 9 chrX 170847946 170848392 -6125748 - L1MB8 LINE L1 -16 6162 5703 448 253 73 13 chrX 170849379 170849529 -6124611 - MER103 DNA DNA -7 159 1 621 313 36 0 chrX 170849884 170850079 -6124061 + MIR SINE MIR 43 244 -18 200 111 0 28 chrX 170850206 170850242 -6123898 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 255 353 92 0 chrX 170851115 170851192 -6122948 - MIR SINE MIR -25 237 169 2185 90 0 35 chrX 170851192 170851502 -6122638 + AluY SINE Alu 1 299 -12 255 353 92 0 chrX 170851502 170851597 -6122543 - MIR SINE MIR -93 169 49 806 139 0 7 chrX 170851672 170851809 -6122331 + L1MA3 LINE L1 6170 6305 0 207 271 0 0 chrX 170851889 170851937 -6122203 + MIR SINE MIR 104 151 -111 524 272 83 0 chrX 170852093 170852273 -6121867 - MIR SINE MIR 0 262 68 529 189 8 8 chrX 170852686 170852813 -6121327 - L1MA7 LINE L1 0 6291 6165 180 350 62 12 chrX 170852919 170852999 -6121141 + L2 LINE L2 2723 2806 -508 240 250 37 96 chrX 170853248 170853384 -6120756 - L1MC4 LINE L1 -1301 6741 6614 197 132 26 0 chrX 170853386 170853424 -6120716 + (TA)n Simple_repeat Simple_repeat 2 40 0 3920 194 102 8 chrX 170853434 170854394 -6119746 - L1MC3 LINE L1 -25 7760 6711 23 0 0 0 chrX 170855014 170855037 -6119103 + AT_rich Low_complexity Low_complexity 1 23 0 587 309 63 36 chrX 170855505 170855806 -6118334 - MLT1H LTR MaLR -215 334 26 6341 148 25 10 chrX 170857687 170859425 -6114715 - L1MA2 LINE L1 0 6304 4540 812 218 75 92 chrX 170860613 170860984 -6113156 - MLT1A1 LTR MaLR 0 365 1 321 286 20 10 chrX 170861051 170861149 -6112991 + MER5A DNA MER1_type 9 107 -82 354 255 47 87 chrX 170862177 170862326 -6111814 + HAL1b LINE L1 344 486 -862 865 305 136 9 chrX 170863285 170863503 -6110637 + LTR33 LTR ERVL 1 190 -331 1615 198 0 16 chrX 170863503 170863811 -6110329 - AluJo SINE Alu -9 303 1 865 305 136 9 chrX 170863811 170864054 -6110086 + LTR33 LTR ERVL 190 521 0 594 76 0 0 chrX 170865323 170865402 -6108738 + MADE1 DNA Mariner 1 79 -1 229 264 150 94 chrX 170866340 170866647 -6107493 + L2 LINE L2 2988 3311 -2 1953 245 87 15 chrX 170866846 170867447 -6106693 + LTR48B LTR ERV1 1 644 0 7778 180 108 28 chrX 170867732 170869355 -6104785 + MER52A LTR ERV1 2 1755 0 526 154 34 17 chrX 170869406 170869523 -6104617 - L1MA9 LINE L1 -35 6277 6159 660 293 57 4 chrX 170869959 170870205 -6103935 - MIR SINE MIR 0 262 4 242 298 8 8 chrX 170870548 170870679 -6103461 + L1M4 LINE L1 3853 3983 -2163 282 279 106 34 chrX 170870722 170870804 -6103336 + L1M4 LINE L1 4070 4145 -2001 183 42 0 0 chrX 170870804 170870828 -6103312 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 282 279 106 34 chrX 170870828 170870982 -6103158 + L1M4 LINE L1 4145 4323 -1823 4930 223 78 63 chrX 170870986 170872552 -6101588 + L1M4 LINE L1 2 1543 -5103 2583 105 40 54 chrX 170872552 170872999 -6101141 + L1PA11 LINE L1 5734 6174 0 4930 223 78 63 chrX 170872999 170873251 -6100889 + L1M4 LINE L1 1543 1790 -4856 2332 57 0 0 chrX 170873251 170873555 -6100585 - AluY SINE Alu 0 304 1 4930 223 78 63 chrX 170873555 170873781 -6100359 + L1M4 LINE L1 1790 2082 -4564 428 298 12 6 chrX 170873799 170873960 -6100180 + L1M4 LINE L1 4224 4385 -2259 342 167 61 0 chrX 170873963 170874029 -6100111 + MSTD-int LTR MaLR 1665 1734 -1 1947 167 39 21 chrX 170874029 170874418 -6099722 + MSTD LTR MaLR 1 396 0 3752 193 22 41 chrX 170874418 170875247 -6098893 + L1MB7 LINE L1 5284 6096 -88 4128 194 17 81 chrX 170875247 170876091 -6098049 + MER6 DNA MER2_type 1 783 -82 2100 138 0 0 chrX 170876091 170876389 -6097751 - AluSx SINE Alu -14 298 1 4128 194 17 81 chrX 170876389 170876468 -6097672 + MER6 DNA MER2_type 783 865 0 3752 193 22 41 chrX 170876468 170876535 -6097605 + L1MB7 LINE L1 6096 6163 -21 23 54 0 0 chrX 170876537 170876574 -6097566 + AT_rich Low_complexity Low_complexity 1 37 0 1219 195 27 0 chrX 170876615 170876871 -6097269 + L1ME LINE L1 3196 3458 -3186 580 294 71 71 chrX 170876857 170876963 -6097177 + L1ME LINE L1 4872 4977 -1667 * 2163 52 42 38 chrX 170876963 170877251 -6096889 + AluY SINE Alu 16 304 -7 580 294 71 71 chrX 170877251 170877472 -6096668 + L1ME LINE L1 4977 5197 -1447 1822 187 32 12 chrX 170877472 170877884 -6096256 - L1MA9 LINE L1 0 6312 5893 580 294 71 71 chrX 170877884 170878465 -6095675 + L1ME LINE L1 5196 5781 -863 670 304 72 25 chrX 170878473 170878835 -6095305 + L1ME LINE L1 5808 6186 -482 257 343 129 13 chrX 170879010 170879197 -6094943 - L2 LINE L2 -313 3000 2794 1241 84 35 10 chrX 170879330 170879533 -6094607 + L1MA3 LINE L1 6098 6305 0 23 86 0 0 chrX 170879804 170879862 -6094278 + AT_rich Low_complexity Low_complexity 1 58 0 2142 97 0 21 chrX 170880516 170880865 -6093275 - AluSx SINE Alu 0 343 1 22 35 0 0 chrX 170881287 170881316 -6092824 + AT_rich Low_complexity Low_complexity 1 29 0 1629 122 22 4 chrX 170881959 170882229 -6091911 - L1PA13 LINE L1 -1 6162 5888 25 51 0 0 chrX 170882594 170882633 -6091507 + AT_rich Low_complexity Low_complexity 1 39 0 2334 97 3 0 chrX 170883428 170883736 -6090404 - AluY SINE Alu -2 309 1 199 243 203 0 chrX 170883742 170883816 -6090324 - MIR3 SINE MIR -15 193 105 4240 111 6 5 chrX 170883885 170884525 -6089615 - L1PA13 LINE L1 -14 6149 5509 216 0 0 0 chrX 170884533 170884557 -6089583 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 285 311 66 0 chrX 170887480 170887586 -6086554 - L2 LINE L2 0 3313 3201 616 258 11 62 chrX 170887627 170887805 -6086335 + MER20 DNA MER1_type 51 219 0 227 378 40 32 chrX 170889202 170889451 -6084689 - L3 LINE CR1 -38 1539 1289 22 56 0 0 chrX 170889724 170889760 -6084380 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chrX 170892902 170892959 -6081181 + AT_rich Low_complexity Low_complexity 1 57 0 950 49 42 56 chrX 170893241 170893385 -6080755 - L1PA7 LINE L1 0 6154 6013 429 198 0 22 chrX 170893951 170894042 -6080098 + L1M3e LINE L1 9 97 -6933 649 197 0 16 chrX 170894047 170894172 -6079968 - MER6B DNA MER2_type -144 132 20 807 326 86 60 chrX 170894205 170895027 -6079113 + L1M1 LINE L1 174 1017 -6548 2481 231 60 29 chrX 170895139 170896445 -6077695 + L1M1 LINE L1 2924 4271 -3294 3390 251 54 63 chrX 170896466 170898914 -6075226 + L1PA15 LINE L1 2 2398 -4399 280 99 11 44 chrX 170898915 170899006 -6075134 + HERV17 LTR ERV1 776 863 -7763 842 50 0 0 chrX 170899012 170899111 -6075029 + AluY SINE Alu 1 99 -212 12687 221 38 23 chrX 170899155 170902978 -6071162 + L1PA15 LINE L1 2393 6281 -535 2132 115 56 34 chrX 170902978 170903334 -6070806 + THE1B LTR MaLR 1 364 0 12687 221 38 23 chrX 170903334 170903846 -6070294 + L1PA15 LINE L1 6281 6784 -32 4329 195 70 9 chrX 170903903 170904590 -6069550 + L1M1 LINE L1 4260 5042 -2523 1149 255 17 0 chrX 170904590 170904825 -6069315 - MER8 DNA MER2_type 0 239 1 4329 195 70 9 chrX 170904825 170905246 -6068894 + L1M1 LINE L1 5042 5436 -2129 6105 109 20 36 chrX 170905289 170906360 -6067780 - L1PA11 LINE L1 -2 6172 5104 5770 28 2 0 chrX 170906460 170907492 -6066648 - L1P2 LINE L1 -429 5726 4693 257 274 42 0 chrX 171107688 171107783 -5866357 + Charlie7 DNA MER1_type 1436 1534 -1078 3881 263 51 29 chrX 171108148 171109585 -5864555 - L1MEc LINE L1 -938 1638 112 2809 186 111 31 chrX 171109585 171110350 -5863790 - LTR1B LTR ERV1 0 826 1 3881 263 51 29 chrX 171110350 171110427 -5863713 - L1MEc LINE L1 -2464 112 38 587 308 62 19 chrX 171110507 171111127 -5863013 + L1ME4a LINE L1 895 1579 -4731 324 297 58 45 chrX 171111656 171112053 -5862087 + L1ME4a LINE L1 2105 2506 -3623 474 248 47 51 chrX 171112594 171112663 -5861477 + Charlie7 DNA MER1_type 1731 1799 -813 2256 96 0 3 chrX 171112663 171112956 -5861184 - AluSc SINE Alu -17 292 1 474 248 47 51 chrX 171112956 171113100 -5861040 + Charlie7 DNA MER1_type 1799 1943 -669 502 162 0 147 chrX 171113215 171113351 -5860789 - MER20 DNA MER1_type -103 116 1 332 329 29 0 chrX 171113354 171113491 -5860649 + L1ME4a LINE L1 5688 5828 -350 186 176 0 0 chrX 171113961 171114012 -5860128 + CT-rich Low_complexity Low_complexity 3 53 0 531 246 176 0 chrX 171115860 171116002 -5858138 - MER5A DNA MER1_type -3 186 20 369 299 39 8 chrX 171116183 171116310 -5857830 - MIR SINE MIR -68 194 64 516 278 8 49 chrX 171116376 171116579 -5857561 - MIR SINE MIR -50 212 19 222 337 178 24 chrX 171117044 171117194 -5856946 + L2 LINE L2 1620 1746 -1568 895 211 0 0 chrX 171117194 171117346 -5856794 + FRAM SINE Alu 1 152 -14 222 337 178 24 chrX 171117346 171117610 -5856530 + L2 LINE L2 1746 2098 -1216 378 309 7 15 chrX 171117623 171117759 -5856381 - L2 LINE L2 -2 3311 3177 307 342 39 59 chrX 171117766 171118190 -5855950 - L2 LINE L2 -214 3058 2554 2043 24 0 12 chrX 171120544 171120791 -5853349 - L1PA5 LINE L1 0 6154 5911 594 313 59 46 chrX 171120975 171121282 -5852858 - MLT1I LTR MaLR -19 390 80 378 315 30 33 chrX 171121618 171121938 -5852202 + L1ME4a LINE L1 3833 4146 -1983 4519 124 16 3 chrX 171122780 171123120 -5851020 + L1PB3 LINE L1 5445 5779 -375 351 0 0 0 chrX 171123120 171123159 -5850981 + (TA)n Simple_repeat Simple_repeat 1 39 0 4519 124 16 3 chrX 171123159 171123518 -5850622 + L1PB3 LINE L1 5779 6153 -1 24 77 0 0 chrX 171123518 171123570 -5850570 + AT_rich Low_complexity Low_complexity 1 52 0 335 270 36 0 chrX 171124060 171124171 -5849969 + L1ME4a LINE L1 6007 6121 0 230 250 16 0 chrX 171124206 171124270 -5849870 + L2 LINE L2 3207 3271 -1 714 266 114 23 chrX 171124900 171125250 -5848890 + L1ME4a LINE L1 5521 5902 -202 2240 109 0 7 chrX 171125305 171125608 -5848532 + AluSq SINE Alu 1 301 -12 201 229 62 94 chrX 171126282 171126378 -5847762 + L2 LINE L2 3177 3269 -3 189 0 0 0 chrX 171126827 171126848 -5847292 + (TA)n Simple_repeat Simple_repeat 2 22 0 34 24 0 0 chrX 171127478 171127519 -5846621 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 171127622 171127643 -5846497 + AT_rich Low_complexity Low_complexity 1 21 0 192 158 0 0 chrX 171127759 171127797 -5846343 + (TG)n Simple_repeat Simple_repeat 1 38 0 1174 205 0 26 chrX 171127990 171128219 -5845921 + MER58A DNA MER1_type 1 223 -1 270 261 0 33 chrX 171128349 171128441 -5845699 - MER103 DNA DNA -14 152 64 476 235 70 70 chrX 171129785 171129972 -5844168 + MER115 DNA AcHobo 279 465 -228 267 146 91 0 chrX 171129980 171130035 -5844105 + Zaphod DNA AcHobo 3894 3953 -78 2144 146 71 29 chrX 171130181 171130591 -5843549 + MSTA LTR MaLR 1 427 -1 26 50 0 0 chrX 171130592 171130632 -5843508 + AT_rich Low_complexity Low_complexity 1 40 0 2375 41 14 14 chrX 171131513 171131808 -5842332 + AluY SINE Alu 1 295 -16 1399 156 19 4 chrX 171131945 171132201 -5841939 - L1MB3 LINE L1 -2 6181 5922 30 45 0 0 chrX 171132989 171133033 -5841107 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chrX 171133107 171133129 -5841011 + AT_rich Low_complexity Low_complexity 1 22 0 1833 247 65 40 chrX 171133134 171133693 -5840447 + L1ME3A LINE L1 5255 5830 -340 2403 76 0 10 chrX 171133693 171133996 -5840144 + AluY SINE Alu 1 300 -11 1833 247 65 40 chrX 171133996 171134161 -5839979 + L1ME3A LINE L1 5830 5989 -181 516 209 251 6 chrX 171135065 171135228 -5838912 - MER3 DNA MER1_type -6 203 1 1015 234 28 0 chrX 171135236 171135454 -5838686 + MER58A DNA MER1_type 1 224 0 1124 259 23 93 chrX 171135934 171136363 -5837777 - LTR16C LTR ERVL -13 478 80 333 259 94 0 chrX 171136544 171136629 -5837511 + L2 LINE L2 3218 3310 -3 845 321 81 9 chrX 171137251 171137671 -5836469 - LTR16A LTR ERVL 0 450 1 819 242 63 5 chrX 171137886 171138076 -5836064 + MER58A DNA MER1_type 3 203 -21 2332 80 3 10 chrX 171138427 171138726 -5835414 - AluSc SINE Alu -12 297 1 8219 169 101 32 chrX 171139007 171139612 -5834528 - MER52A LTR ERV1 0 1755 1193 4511 158 49 75 chrX 171139612 171140711 -5833429 + MER11C LTR ERVK 1 1071 0 8219 169 101 32 chrX 171140711 171141746 -5832394 - MER52A LTR ERV1 -562 1193 1 583 273 65 8 chrX 171141746 171141995 -5832145 + MER90 LTR ERV1 304 567 -8 209 276 40 40 chrX 171142918 171142994 -5831146 + MIR SINE MIR 19 94 -114 687 213 151 89 chrX 171143256 171143673 -5830467 - MLT1H LTR MaLR 0 549 107 758 234 50 37 chrX 171143734 171143952 -5830188 - MIR SINE MIR -28 234 14 323 250 100 25 chrX 171143965 171144085 -5830055 + MLT1L LTR MaLR 252 380 -235 1901 215 19 59 chrX 171144298 171144824 -5829316 - MLT1D LTR MaLR 0 505 1 242 293 60 15 chrX 171144900 171145033 -5829107 - L1ME4a LINE L1 -5 6116 5978 368 247 166 38 chrX 171145049 171145284 -5828856 - L1ME4a LINE L1 -187 5934 5670 228 386 61 25 chrX 171145380 171145543 -5828597 + MER5A DNA MER1_type 5 173 -16 380 351 48 6 chrX 171145877 171146045 -5828095 - MIR SINE MIR -14 248 74 322 273 74 74 chrX 171146178 171146434 -5827706 - MIR SINE MIR -4 258 3 23 78 0 0 chrX 171147267 171147318 -5826822 + AT_rich Low_complexity Low_complexity 1 51 0 1230 52 0 0 chrX 171147341 171147496 -5826644 - L1PA5 LINE L1 0 6154 6000 1486 301 105 25 chrX 171148279 171148878 -5825262 + MLT2F LTR ERVL 17 663 0 644 267 134 14 chrX 171149131 171149348 -5824792 - MIR SINE MIR -1 261 19 239 377 53 39 chrX 171149488 171149900 -5824240 - L2 LINE L2 -216 3056 2636 682 224 104 42 chrX 171150134 171150340 -5823800 + MLT1A1 LTR MaLR 1 182 -183 4106 80 26 0 chrX 171150340 171150880 -5823260 + MER41A LTR ERV1 1 554 0 682 224 104 42 chrX 171150880 171151076 -5823064 + MLT1A1 LTR MaLR 182 365 0 505 338 53 10 chrX 171151207 171151449 -5822691 + MIR SINE MIR 3 254 -8 24 77 0 0 chrX 171151838 171151890 -5822250 + AT_rich Low_complexity Low_complexity 1 52 0 1319 13 0 0 chrX 171152796 171152946 -5821194 + L1PA4 LINE L1 5998 6147 -8 1782 238 38 19 chrX 171152956 171153427 -5820713 + L1ME3A LINE L1 5671 6150 -20 1962 166 151 27 chrX 171154571 171154981 -5819159 + MER21B LTR ERV1 329 789 -74 296 274 60 24 chrX 171155047 171155131 -5819009 + L2 LINE L2 3134 3220 -52 261 0 0 0 chrX 171156310 171156339 -5817801 + (CA)n Simple_repeat Simple_repeat 2 30 0 472 176 10 29 chrX 171156791 171156893 -5817247 - MSTB LTR MaLR 0 426 327 1391 103 20 0 chrX 171156893 171157096 -5817044 - L1P4 LINE L1 -378 5785 5579 575 70 0 30 chrX 171157096 171157196 -5816944 + L1PA13 LINE L1 6067 6163 0 1552 176 101 43 chrX 171157196 171157543 -5816597 - MSTB LTR MaLR -59 367 1 191 307 45 23 chrX 171159024 171159112 -5815028 - MIR SINE MIR -20 242 153 1694 230 23 63 chrX 171159148 171159346 -5814794 - L1ME3A LINE L1 -30 6140 5936 181 111 0 0 chrX 171159346 171159373 -5814767 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2237 95 3 0 chrX 171159373 171159656 -5814484 - AluSp SINE Alu -1 310 1 1694 230 23 63 chrX 171159656 171159969 -5814171 - L1ME3A LINE L1 -233 5937 5649 5954 108 17 10 chrX 171159969 171161017 -5813123 - L1PB1 LINE L1 0 6151 5103 1694 230 23 63 chrX 171161017 171161059 -5813081 - L1ME3A LINE L1 -521 5649 5607 457 254 101 22 chrX 171161059 171161197 -5812943 - MIR SINE MIR -111 151 3 1660 114 122 11 chrX 171161711 171161973 -5812167 + AluSg1 SINE Alu 1 291 -18 238 273 54 14 chrX 171161973 171162137 -5812003 - L2 LINE L2 -22 3291 3169 14714 134 26 3 chrX 171165084 171167448 -5806692 - Tigger1 DNA MER2_type 0 2418 1 222 150 0 0 chrX 171167864 171167904 -5806236 + (TC)n Simple_repeat Simple_repeat 1 40 0 1212 286 78 0 chrX 171168311 171168695 -5805445 + L1ME LINE L1 13 426 -5644 759 199 99 0 chrX 171169281 171169452 -5804688 - MER58C DNA MER1_type -25 190 3 2118 121 0 3 chrX 171170989 171171302 -5802838 - AluSx SINE Alu 0 312 1 703 205 69 165 chrX 171171966 171172409 -5801731 - MLT1G LTR MaLR 0 590 183 948 262 65 19 chrX 171172423 171172944 -5801196 + L1ME LINE L1 5184 5883 -287 234 0 0 0 chrX 171172944 171172970 -5801170 + (TA)n Simple_repeat Simple_repeat 2 27 0 515 241 28 47 chrX 171173079 171173291 -5800849 + L1ME3A LINE L1 5962 6169 -1 676 311 34 17 chrX 171174621 171174859 -5799281 + MIR SINE MIR 18 259 -3 1718 222 96 49 chrX 171174986 171175477 -5798663 - LTR40a LTR ERVL -1 518 5 1656 243 51 48 chrX 171175564 171176080 -5798060 - L1ME3A LINE L1 -1 6169 5649 1777 150 105 12 chrX 171176080 171176414 -5797726 + MLT1A1 LTR MaLR 1 365 0 1656 243 51 48 chrX 171176414 171176444 -5797696 - L1ME3A LINE L1 -521 5649 5621 248 35 0 0 chrX 171176514 171176543 -5797597 + U6 snRNA snRNA 3 31 -76 21 36 0 0 chrX 171177492 171177520 -5796620 + AT_rich Low_complexity Low_complexity 1 28 0 2530 134 10 72 chrX 171177570 171177688 -5796452 + L1PA16 LINE L1 5712 5836 -330 2205 89 0 0 chrX 171177688 171177968 -5796172 + AluSg SINE Alu 1 280 -30 2530 134 10 72 chrX 171177968 171178334 -5795806 + L1PA16 LINE L1 5836 6166 0 351 233 333 0 chrX 171178643 171178763 -5795377 + MER5A DNA MER1_type 30 189 0 22 0 0 0 chrX 171178919 171178941 -5795199 + AT_rich Low_complexity Low_complexity 1 22 0 1967 126 0 4 chrX 171179735 171180013 -5794127 - AluSx SINE Alu -35 277 1 460 284 41 26 chrX 171180151 171180345 -5793795 - MIR SINE MIR 0 262 66 2790 66 98 5 chrX 171180560 171180970 -5793170 - LTR7 LTR ERV1 -2 448 1 2487 77 48 13 chrX 171180970 171181347 -5792793 - HERVH LTR ERV1 0 7713 7324 1328 113 48 39 chrX 171181347 171181577 -5792563 - HERVH LTR ERV1 -1894 5819 5588 * 4389 140 0 1 chrX 171181557 171182220 -5791920 - HERVH LTR ERV1 -2564 5149 4488 5854 92 12 6 chrX 171182222 171183071 -5791069 - HERVH LTR ERV1 -3720 3993 3140 * 15157 83 12 22 chrX 171183050 171185276 -5788864 - HERVH LTR ERV1 -4718 2995 793 3044 100 4 26 chrX 171185330 171185799 -5788341 - HERVH LTR ERV1 -7254 459 1 2583 78 125 5 chrX 171185801 171186201 -5787939 - LTR7 LTR ERV1 -2 448 1 789 262 35 32 chrX 171186214 171186243 -5787897 + HAL1 LINE L1 134 161 -2346 4211 105 7 3 chrX 171186243 171186841 -5787299 + MER4A LTR ERV1 1 600 0 789 262 35 32 chrX 171186841 171187138 -5787002 + HAL1 LINE L1 161 494 -2013 1196 270 95 54 chrX 171187184 171187666 -5786474 - L2 LINE L2 0 3313 2812 468 207 69 69 chrX 171187667 171187841 -5786299 - LTR48 LTR ERV1 0 787 614 368 256 204 29 chrX 171187865 171188139 -5786001 - LTR48 LTR ERV1 -302 485 164 249 268 171 0 chrX 171188132 171188214 -5785926 - MER34 LTR ERV1 -446 96 1 * 1451 281 83 49 chrX 171188217 171188626 -5785514 + L2 LINE L2 2401 2795 -518 1426 199 97 30 chrX 171188626 171188997 -5785143 - MSTD LTR MaLR 0 396 1 1451 281 83 49 chrX 171188997 171189461 -5784679 + L2 LINE L2 2795 3312 -1 27 0 0 0 chrX 171189681 171189708 -5784432 + AT_rich Low_complexity Low_complexity 1 27 0 228 204 204 0 chrX 171189715 171189769 -5784371 + L2 LINE L2 3224 3288 -25 2382 67 0 0 chrX 171190033 171190343 -5783797 + AluSp SINE Alu 1 310 0 2337 81 0 16 chrX 171190428 171190736 -5783404 - AluSc SINE Alu -6 303 1 470 274 163 20 chrX 171191034 171191432 -5782708 - L1M4 LINE L1 -1372 4774 4320 367 324 106 28 chrX 171191612 171192358 -5781782 - L1M4 LINE L1 -1958 4188 3385 826 141 17 24 chrX 171192463 171192588 -5781552 + CT-rich Low_complexity Low_complexity 1 125 -427 1926 132 53 0 chrX 171192588 171192747 -5781393 - AluSx SINE Alu -16 296 114 267 54 0 0 chrX 171192747 171192784 -5781356 + (TTTTA)n Simple_repeat Simple_repeat 2 38 0 1926 132 53 0 chrX 171192784 171192905 -5781235 - AluSx SINE Alu -198 114 1 826 141 17 24 chrX 171192905 171193020 -5781120 + CT-rich Low_complexity Low_complexity 125 552 0 498 215 221 7 chrX 171193219 171193368 -5780772 - MER5A DNA MER1_type 0 189 9 1890 146 3 3 chrX 171193666 171193982 -5780158 - L1MA8 LINE L1 -433 5858 5543 2200 119 38 43 chrX 171193985 171194405 -5779735 + L1MA8 LINE L1 5870 6287 -4 231 167 0 0 chrX 171194606 171194648 -5779492 + L2 LINE L2 3263 3304 -9 1939 216 101 52 chrX 171194651 171195327 -5778813 + MER67C LTR ERV1 2 710 0 286 281 18 26 chrX 171195328 171195442 -5778698 + GA-rich Low_complexity Low_complexity 3 115 0 189 147 0 0 chrX 171196165 171196199 -5777941 + (T)n Simple_repeat Simple_repeat 1 34 0 1789 155 78 0 chrX 171196484 171196806 -5777334 - MER7A DNA MER2_type -1 345 1 4000 117 45 2 chrX 171196824 171197441 -5776699 - LTR9B LTR ERV1 0 644 1 29 70 0 0 chrX 171197607 171197664 -5776476 + AT_rich Low_complexity Low_complexity 1 57 0 363 305 152 10 chrX 171197704 171197901 -5776239 + MIR SINE MIR 8 232 -30 309 284 0 37 chrX 171197917 171198026 -5776114 + L1MC4a LINE L1 5826 5930 -1878 324 268 44 60 chrX 171199026 171199204 -5774936 - MIR SINE MIR -51 211 38 2646 197 11 4 chrX 171199398 171199925 -5774215 + L1MB3 LINE L1 5413 5943 -240 9382 174 110 33 chrX 171200089 171200740 -5773400 + L1MCa LINE L1 55 655 -5771 2200 126 0 0 chrX 171200740 171201050 -5773090 - AluSx SINE Alu 0 312 3 9382 174 110 33 chrX 171201050 171202045 -5772095 + L1MCa LINE L1 655 1572 -4854 1142 146 18 79 chrX 171202045 171202325 -5771815 + L1MA10 LINE L1 6069 6331 -3 9382 174 110 33 chrX 171202325 171202971 -5771169 + L1MCa LINE L1 1572 2528 -3898 2026 108 18 7 chrX 171202989 171203313 -5770827 - AluSx SINE Alu 0 327 1 5326 105 12 69 chrX 171203319 171204250 -5769890 - L1PA16 LINE L1 -1 6165 5288 2693 104 30 11 chrX 171204246 171204686 -5769454 + L1MB3 LINE L1 3163 3610 -3955 * 7063 149 9 27 chrX 171204677 171205398 -5768742 + L1MB3 LINE L1 5381 6113 -1489 2315 140 79 27 chrX 171205398 171205805 -5768335 + MSTA LTR MaLR 1 428 0 7063 149 9 27 chrX 171205805 171206164 -5767976 + L1MB3 LINE L1 6113 6477 -1125 2602 51 0 16 chrX 171206164 171206480 -5767660 + AluY SINE Alu 1 311 0 7063 149 9 27 chrX 171206480 171207264 -5766876 + L1MB3 LINE L1 6477 7200 -402 2855 128 2 2 chrX 171207264 171207701 -5766439 + L1PB3 LINE L1 5717 6153 -1 7063 149 9 27 chrX 171207701 171207757 -5766383 + L1MB3 LINE L1 7200 7255 -347 3658 88 8 9 chrX 171207813 171208346 -5765794 + L1MA2 LINE L1 5773 6304 0 279 306 5 0 chrX 171208368 171208449 -5765691 + L1MC1 LINE L1 4025 4109 -2037 653 238 6 0 chrX 171208477 171208645 -5765495 + L1M4 LINE L1 4931 5099 -1047 5573 212 20 11 chrX 171208662 171210851 -5763289 + L1MC1 LINE L1 4121 6327 -6 2223 112 3 0 chrX 171213208 171213511 -5760629 + AluSq SINE Alu 1 304 -9 633 243 67 70 chrX 171213550 171213975 -5760165 - LTR33A LTR ERVL -66 457 1 449 292 25 12 chrX 171213995 171214156 -5759984 + MLT1G1 LTR MaLR 1 163 -404 288 198 57 75 chrX 171214247 171214353 -5759787 - LTR33A LTR ERVL -56 467 364 * 914 272 85 39 chrX 171214315 171214620 -5759520 + MLT1G1 LTR MaLR 266 584 -11 216 342 17 17 chrX 171215111 171215231 -5758909 + GA-rich Low_complexity Low_complexity 1 120 0 433 249 55 55 chrX 171215418 171215583 -5758557 + MIR3 SINE MIR 43 207 -1 2751 84 0 0 chrX 171215948 171216303 -5757837 + THE1A LTR MaLR 1 355 0 4880 83 0 8 chrX 171216303 171216954 -5757186 + THE1A-int LTR MaLR 1 646 -934 22 0 0 0 chrX 171216994 171217016 -5757124 + AT_rich Low_complexity Low_complexity 1 22 0 741 135 0 0 chrX 171217026 171217137 -5757003 - AluJb SINE Alu -24 288 178 1459 163 4 39 chrX 171217335 171217593 -5756547 - AluJo SINE Alu -25 287 39 534 82 44 59 chrX 171217808 171218114 -5756026 + (TTAAA)n Simple_repeat Simple_repeat 1 301 0 481 264 45 34 chrX 171218143 171218321 -5755819 - L1ME2 LINE L1 -48 6116 5937 4848 215 68 36 chrX 171218343 171218973 -5755167 - L1MCc LINE L1 -2648 4293 3685 2316 104 0 3 chrX 171218973 171219280 -5754860 - AluSc SINE Alu -1 308 3 4848 215 68 36 chrX 171219280 171220299 -5753841 - L1MCc LINE L1 -3256 3685 2700 2426 58 0 39 chrX 171220299 171220611 -5753529 - AluY SINE Alu -10 301 2 4848 215 68 36 chrX 171220611 171220735 -5753405 - L1MCc LINE L1 -4241 2700 2581 189 0 0 0 chrX 171220735 171220756 -5753384 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4848 215 68 36 chrX 171220756 171220842 -5753298 - L1MCc LINE L1 -4360 2581 3106 2519 51 0 19 chrX 171220842 171221156 -5752984 - AluY SINE Alu -3 308 1 4848 215 68 36 chrX 171221156 171221592 -5752548 - L1MCc LINE L1 -3834 3107 2686 263 368 0 0 chrX 171221585 171221672 -5752468 - L1M4 LINE L1 -5693 1156 1070 * 332 335 91 61 chrX 171221830 171222060 -5752080 - L1M4 LINE L1 -6065 784 548 308 352 31 47 chrX 171222076 171222204 -5751936 - L1M2 LINE L1 -6062 787 662 1164 331 55 2 chrX 171222541 171222958 -5751182 - L1M4 LINE L1 -6399 450 12 1388 275 106 29 chrX 171222968 171223928 -5750212 - L1MCc LINE L1 -4606 2516 1260 22 0 0 0 chrX 171224179 171224201 -5749939 + AT_rich Low_complexity Low_complexity 1 22 0 2144 60 0 0 chrX 171224601 171224866 -5749274 + AluY SINE Alu 35 299 -12 1955 143 3 16 chrX 171225517 171225825 -5748315 - AluSx SINE Alu -8 304 1 429 282 100 33 chrX 171225984 171226084 -5748056 + MLT1J2 LTR MaLR 76 168 -241 546 103 0 0 chrX 171226084 171226162 -5747978 + MADE1 DNA Mariner 3 80 0 429 282 100 33 chrX 171226162 171226400 -5747740 + MLT1J2 LTR MaLR 168 395 -14 1214 195 65 19 chrX 171226400 171226708 -5747432 + MER5C DNA MER1_type 3 324 0 274 260 0 26 chrX 171227433 171227510 -5746630 + MLT2E LTR ERVL 30 104 -524 1784 103 0 16 chrX 171227768 171228011 -5746129 - AluSx SINE Alu -13 299 61 297 237 13 0 chrX 171228327 171228403 -5745737 + MER116 DNA Mariner 4 80 0 735 137 114 163 chrX 171228729 171228956 -5745184 - MER20 DNA MER1_type -2 217 2 196 364 20 40 chrX 171230376 171230527 -5743613 - MIR SINE MIR -77 185 38 14933 153 17 15 chrX 171230535 171230928 -5743212 + L1MA3 LINE L1 2654 3044 -4680 2018 133 0 29 chrX 171230928 171231237 -5742903 + AluSx SINE Alu 1 300 -12 14933 153 17 15 chrX 171231237 171235899 -5738241 + L1MA3 LINE L1 3044 7723 -1 2284 95 3 0 chrX 171236388 171236682 -5737458 + AluSp SINE Alu 1 295 -18 222 333 23 11 chrX 171238588 171238675 -5735465 + L2 LINE L2 3136 3223 -49 250 289 0 0 chrX 171239623 171239713 -5734427 + (TA)n Simple_repeat Simple_repeat 1 90 0 29 0 0 0 chrX 171240029 171240058 -5734082 + AT_rich Low_complexity Low_complexity 1 29 0 273 29 0 0 chrX 171240353 171240387 -5733753 + (TC)n Simple_repeat Simple_repeat 1 34 0 2133 122 141 5 chrX 171240971 171241348 -5732792 - MSTA LTR MaLR 0 428 1 855 282 8 8 chrX 171241781 171242036 -5732104 + MIR SINE MIR 4 258 -4 218 321 150 0 chrX 171242084 171242224 -5731916 - L2 LINE L2 -54 3259 3099 233 81 27 0 chrX 171242663 171242700 -5731440 + MER110A LTR ERV1 1 38 -430 1088 194 25 10 chrX 171242708 171242909 -5731231 + MER58A DNA MER1_type 2 205 -19 929 163 16 126 chrX 171242923 171243169 -5730971 - MER20 DNA MER1_type 0 219 1 572 297 101 8 chrX 171243169 171243551 -5730589 + MER110A LTR ERV1 52 476 -15 481 174 0 0 chrX 171243646 171243732 -5730408 - L1MA4A LINE L1 -25 6278 6193 2055 97 7 10 chrX 171244068 171244358 -5729782 + AluSq SINE Alu 1 289 -24 420 205 0 12 chrX 171244550 171244633 -5729507 + L2 LINE L2 3227 3308 -5 2707 133 7 30 chrX 171244788 171245224 -5728916 - MSTB LTR MaLR 0 426 1 1196 275 79 5 chrX 171245455 171245862 -5728278 + L1MCc LINE L1 40 476 -5947 1693 146 45 51 chrX 171246053 171246181 -5727959 + MLT1A1 LTR MaLR 32 159 -206 2132 121 0 3 chrX 171246181 171246470 -5727670 + AluSx SINE Alu 1 288 -24 1693 146 45 51 chrX 171246470 171246677 -5727463 + MLT1A1 LTR MaLR 159 365 0 21 36 0 0 chrX 171247378 171247406 -5726734 + AT_rich Low_complexity Low_complexity 1 28 0 205 337 83 26 chrX 171247507 171247700 -5726440 + L2 LINE L2 2667 2870 -444 322 300 110 0 chrX 171247749 171247849 -5726291 - L2 LINE L2 -19 3253 3143 821 258 96 46 chrX 171247928 171248482 -5725658 - MLT1G LTR MaLR -7 548 1 191 336 52 127 chrX 171248512 171248875 -5725265 + L2 LINE L2 2919 3254 -18 189 171 0 0 chrX 171248996 171249031 -5725109 + GA-rich Low_complexity Low_complexity 2 36 0 6830 144 134 2 chrX 171249802 171250988 -5723152 - Tigger1 DNA MER2_type 0 2418 1076 291 203 31 0 chrX 171251255 171251319 -5722821 - MER116 DNA Mariner -14 66 1 899 256 30 26 chrX 171251509 171251743 -5722397 + MIR SINE MIR 4 238 -24 1819 215 83 12 chrX 171252361 171252865 -5721275 - MER119 DNA MER1_type 0 583 1 1488 314 49 30 chrX 171253638 171254234 -5719906 - MLT2F LTR ERVL -56 607 1 322 382 42 28 chrX 171254264 171254333 -5719807 + L2 LINE L2 3127 3194 -78 2340 181 71 111 chrX 171254333 171255193 -5718947 + LTR1B LTR ERV1 1 826 0 322 382 42 28 chrX 171255193 171255267 -5718873 + L2 LINE L2 3194 3272 0 45 83 0 0 chrX 171255587 171255695 -5718445 + AT_rich Low_complexity Low_complexity 1 108 0 250 385 43 0 chrX 171256546 171256663 -5717477 - MIR SINE MIR -94 168 47 512 308 75 0 chrX 171256826 171256959 -5717181 - L2 LINE L2 -5 3267 3125 553 288 69 43 chrX 171257676 171257909 -5716231 + MIR SINE MIR 2 240 -22 945 290 54 32 chrX 171258169 171258610 -5715530 - LTR16A1 LTR ERVL 0 457 7 279 89 0 0 chrX 171259520 171259565 -5714575 - L1PB4 LINE L1 0 6156 6112 439 345 89 30 chrX 171259995 171260198 -5713942 + L2 LINE L2 3058 3272 0 216 296 37 0 chrX 171261923 171261977 -5712163 - MIR SINE MIR -137 71 16 2366 105 3 0 chrX 171262132 171262438 -5711702 + AluSq SINE Alu 1 307 -6 2518 77 151 3 chrX 171262853 171263243 -5710897 + LTR7 LTR ERV1 1 448 -2 22 0 0 0 chrX 171264175 171264197 -5709943 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chrX 171265313 171265340 -5708800 + (TATG)n Simple_repeat Simple_repeat 4 30 0 2640 195 26 2 chrX 171266057 171266559 -5707581 + MLT2B2 LTR ERVL 1 514 -1 2142 84 40 4 chrX 171267294 171267593 -5706547 + AluSp SINE Alu 1 309 0 291 215 0 15 chrX 171268075 171268140 -5706000 - HAL1 LINE L1 -1656 851 788 269 313 0 0 chrX 171268140 171268207 -5705933 - HAL1 LINE L1 -2179 328 262 4538 208 92 35 chrX 171268402 171269163 -5704977 + L1M4 LINE L1 2489 3206 -2940 405 0 0 0 chrX 171269163 171269208 -5704932 + (CA)n Simple_repeat Simple_repeat 2 46 0 4538 208 92 35 chrX 171269208 171269666 -5704474 + L1M4 LINE L1 3206 3800 -2346 2255 116 7 3 chrX 171269666 171269976 -5704164 + AluSx SINE Alu 1 311 -1 4538 208 92 35 chrX 171269976 171270165 -5703975 + L1M4 LINE L1 3800 3977 -2169 1684 165 40 3 chrX 171270166 171270487 -5703653 + L1MC2 LINE L1 5999 6331 -13 2406 93 0 13 chrX 171270487 171270799 -5703341 + AluSp SINE Alu 1 308 -5 29 0 0 0 chrX 171270800 171270829 -5703311 + AT_rich Low_complexity Low_complexity 1 29 0 6071 48 13 17 chrX 171271148 171271917 -5702223 + MER4E LTR ERV1 1 766 0 217 219 0 0 chrX 171272203 171272244 -5701896 + MIR SINE MIR 106 146 -116 297 151 0 0 chrX 171272512 171272565 -5701575 + GA-rich Low_complexity Low_complexity 4 56 0 879 189 34 48 chrX 171272625 171272777 -5701363 + MER3 DNA MER1_type 3 153 -56 2145 115 7 3 chrX 171272777 171273073 -5701067 - AluSx SINE Alu -15 297 1 879 189 34 48 chrX 171273073 171273126 -5701014 + MER3 DNA MER1_type 153 205 -4 233 311 129 38 chrX 171273848 171273980 -5700160 - MER5A DNA MER1_type -3 186 43 23 0 0 0 chrX 171274280 171274303 -5699837 + AT_rich Low_complexity Low_complexity 1 23 0 533 234 0 94 chrX 171276923 171277094 -5697046 - MER103 DNA DNA -2 164 10 2163 105 24 3 chrX 171277400 171277696 -5696444 - AluSq SINE Alu -11 302 1 2454 94 12 59 chrX 171279203 171279691 -5694449 + MER4A LTR ERV1 1 423 -241 653 121 187 60 chrX 171279711 171279877 -5694263 + MER4C LTR ERV1 277 463 -2 1924 75 8 11 chrX 171280303 171280568 -5693572 + L1PA8 LINE L1 5905 6168 -4 619 271 77 5 chrX 171281892 171282099 -5692041 - MIR SINE MIR -2 260 39 3479 128 17 79 chrX 171283108 171283751 -5690389 - LTR26 LTR ERV1 0 603 1 2416 56 0 23 chrX 171285575 171285881 -5688259 + AluY SINE Alu 1 299 -12 2625 118 68 5 chrX 171286130 171286530 -5687610 - MSTA LTR MaLR -3 425 1 2526 74 3 0 chrX 171289336 171289646 -5684494 + AluSp SINE Alu 1 311 -2 293 284 90 0 chrX 171289776 171289926 -5684214 - MIR SINE MIR -56 206 45 2364 100 0 10 chrX 171291211 171291522 -5682618 + AluSx SINE Alu 1 308 -4 446 268 77 0 chrX 171292772 171292940 -5681200 - MIR SINE MIR -30 232 52 242 170 0 0 chrX 171294331 171294378 -5679762 - L1MA9 LINE L1 -38 6274 6228 1256 161 210 0 chrX 171294380 171294623 -5679517 + Tigger3b DNA MER2_type 3 296 -935 332 87 0 0 chrX 171294629 171294675 -5679465 - MADE1 DNA Mariner 0 80 35 299 180 18 45 chrX 171294691 171294802 -5679338 + (TAA)n Simple_repeat Simple_repeat 1 108 0 1974 128 0 0 chrX 171294802 171295067 -5679073 - AluSx SINE Alu -28 284 20 6184 112 24 10 chrX 171295071 171295995 -5678145 + Tigger3b DNA MER2_type 293 1229 -2 4092 183 27 44 chrX 171295997 171296431 -5677709 - L1MA9 LINE L1 -83 6229 5789 1907 80 34 0 chrX 171296431 171296693 -5677447 - L1PA15 LINE L1 -6 6159 5889 4092 183 27 44 chrX 171296693 171297170 -5676970 - L1MA9 LINE L1 -523 5789 5333 2131 133 7 0 chrX 171298249 171298558 -5675582 + AluSx SINE Alu 1 311 -1 241 253 56 74 chrX 171298738 171298850 -5675290 - MIR SINE MIR -104 104 3 1538 167 7 17 chrX 171300009 171300297 -5673843 + AluJb SINE Alu 1 285 -27 1141 87 0 0 chrX 171300297 171300468 -5673672 + AluSg/x SINE Alu 132 302 0 683 199 0 88 chrX 171300502 171300683 -5673457 + AluSg/x SINE Alu 148 312 0 1553 170 3 17 chrX 171301311 171301600 -5672540 + AluJb SINE Alu 1 285 -27 1129 93 0 0 chrX 171301600 171301775 -5672365 + AluSg/x SINE Alu 132 306 0 22 0 0 0 chrX 171301780 171301802 -5672338 + AT_rich Low_complexity Low_complexity 1 22 0 327 206 61 14 chrX 171301802 171301900 -5672240 + AluJ/FLAM SINE Alu 1 94 -208 602 113 10 10 chrX 171301900 171301997 -5672143 + AluJo/FRAM SINE Alu 154 250 -62 1160 124 76 0 chrX 171301997 171302211 -5671929 + AluSg/x SINE Alu 85 312 0 21 0 0 0 chrX 171302216 171302237 -5671903 + AT_rich Low_complexity Low_complexity 1 21 0 649 210 0 88 chrX 171302247 171302428 -5671712 + AluSg/x SINE Alu 148 312 0 25 0 0 0 chrX 171303042 171303067 -5671073 + AT_rich Low_complexity Low_complexity 1 25 0 1249 63 44 0 chrX 171306827 171306986 -5667154 + AluYb8 SINE Alu 142 307 -11 321 306 108 6 chrX 171307675 171307832 -5666308 - MIR SINE MIR -50 212 40 198 0 0 0 chrX 171308193 171308215 -5665925 + (T)n Simple_repeat Simple_repeat 1 22 0 5563 178 30 9 chrX 171309279 171310466 -5663674 - L1MC1 LINE L1 0 6333 5122 497 269 56 25 chrX 171314373 171314533 -5659607 - MIR SINE MIR -85 177 13 2334 66 0 0 chrX 171316660 171316946 -5657194 + AluY SINE Alu 22 307 -4 21 36 0 0 chrX 171320992 171321020 -5653120 + AT_rich Low_complexity Low_complexity 1 28 0 385 336 159 5 chrX 171322053 171322261 -5651879 - MIR SINE MIR 0 262 23 374 299 139 25 chrX 171323612 171323893 -5650247 + MLT1J2 LTR MaLR 1 313 -137 4293 127 155 18 chrX 171324382 171325378 -5648762 - MER11B LTR ERVK 0 1236 1 272 48 24 0 chrX 171327717 171327759 -5646381 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 1263 253 43 63 chrX 171327883 171328552 -5645588 - L1MEc LINE L1 -4419 1977 1322 535 183 0 139 chrX 171328558 171328766 -5645374 - L1MEc LINE L1 -6187 209 31 21 0 0 0 chrX 171329778 171329799 -5644341 + AT_rich Low_complexity Low_complexity 1 21 0 911 207 101 13 chrX 171329862 171330170 -5643970 + MER33 DNA MER1_type 1 324 0 252 296 83 68 chrX 171330270 171330402 -5643738 + MIR3 SINE MIR 63 196 -12 288 330 0 0 chrX 171330639 171330757 -5643383 + L1ME LINE L1 5584 5701 -420 252 0 0 0 chrX 171331051 171331079 -5643061 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 243 263 136 8 chrX 171331121 171331239 -5642901 + MLT1H LTR MaLR 23 155 -394 900 208 113 30 chrX 171331848 171332079 -5642061 + MIR SINE MIR 13 262 0 2295 113 0 0 chrX 171333142 171333442 -5640698 + AluSg SINE Alu 1 300 -10 252 246 0 0 chrX 171333670 171333731 -5640409 + L1ME LINE L1 5589 5649 -472 232 244 46 53 chrX 171334119 171334250 -5639890 - MLT1J1 LTR MaLR -316 130 1 296 391 81 30 chrX 171334250 171334646 -5639494 + L2 LINE L2 2017 2432 -882 1801 165 17 22 chrX 171334680 171335037 -5639103 + MLT2C2 LTR ERVL 19 373 -91 273 39 39 19 chrX 171335038 171335090 -5639050 + (TA)n Simple_repeat Simple_repeat 2 54 0 201 175 25 0 chrX 171335157 171335197 -5638943 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 342 0 0 0 chrX 171335203 171335241 -5638899 + (TG)n Simple_repeat Simple_repeat 1 38 0 25 51 0 0 chrX 171336118 171336157 -5637983 + AT_rich Low_complexity Low_complexity 1 39 0 473 266 58 62 chrX 171336279 171336353 -5637787 - L1M4 LINE L1 -1334 4812 4739 2203 96 20 0 chrX 171336353 171336645 -5637495 + AluSx SINE Alu 1 298 -14 930 113 0 0 chrX 171336645 171336787 -5637353 + (TA)n Simple_repeat Simple_repeat 2 143 0 473 266 58 62 chrX 171336787 171336952 -5637188 - L1M4 LINE L1 -1405 4741 4573 313 328 81 44 chrX 171336987 171337307 -5636833 + L2 LINE L2 1921 2252 -1062 222 318 40 28 chrX 171337441 171337617 -5636523 + L2 LINE L2 2307 2484 -830 244 172 37 108 chrX 171337656 171337771 -5636369 - MLT1G LTR MaLR 0 574 462 388 364 59 4 chrX 171338124 171338377 -5635763 + L2 LINE L2 2550 2816 -498 182 286 32 32 chrX 171338490 171338553 -5635587 + L2 LINE L2 3249 3311 -2 186 295 248 9 chrX 171339062 171339167 -5634973 - L2 LINE L2 -1 3271 3142 512 275 58 79 chrX 171339205 171339583 -5634557 + MLT1I LTR MaLR 40 409 0 322 346 103 34 chrX 171340142 171340463 -5633677 + L2 LINE L2 2332 2674 -640 892 264 37 0 chrX 171340569 171340785 -5633355 - MER58A DNA MER1_type 0 224 1 538 359 41 44 chrX 171340814 171341179 -5632961 + L2 LINE L2 2909 3272 0 736 300 77 46 chrX 171341678 171342135 -5632005 - MLT2F LTR ERVL -4 659 189 2291 88 22 0 chrX 171342157 171342476 -5631664 + THE1B LTR MaLR 1 326 -38 225 173 0 120 chrX 171342492 171342567 -5631573 - L1M2 LINE L1 -811 5489 5424 824 128 21 0 chrX 171342569 171342710 -5631430 + L1MA6 LINE L1 5798 5941 -359 261 81 0 0 chrX 171342730 171342767 -5631373 + THE1B LTR MaLR 328 364 0 619 178 27 41 chrX 171342783 171342929 -5631211 - MLT2F LTR ERVL -519 144 1 1520 124 8 8 chrX 171343216 171343481 -5630659 - L1M2 LINE L1 -609 5691 5427 1318 121 0 5 chrX 171343481 171343678 -5630462 + L1PA10 LINE L1 5961 6157 -11 2996 118 39 0 chrX 171343776 171344260 -5629880 + L1MA6 LINE L1 5798 6300 0 36 23 0 0 chrX 171346305 171346348 -5627792 + AT_rich Low_complexity Low_complexity 1 43 0 285 306 78 42 chrX 171347123 171347316 -5626824 + MIR SINE MIR 20 219 -43 1747 187 0 0 chrX 171347372 171347655 -5626485 + AluJb SINE Alu 16 298 -14 21 57 0 0 chrX 171347717 171347752 -5626388 + AT_rich Low_complexity Low_complexity 1 35 0 29 60 0 0 chrX 171347780 171347830 -5626310 + AT_rich Low_complexity Low_complexity 1 50 0 468 235 13 60 chrX 171347833 171347982 -5626158 - MIR SINE MIR -58 204 63 14238 133 19 16 chrX 171348619 171349998 -5624142 + Tigger1 DNA MER2_type 1 1375 -1043 312 27 0 0 chrX 171349998 171350035 -5624105 + (TTA)n Simple_repeat Simple_repeat 3 39 0 5609 32 1 1 chrX 171350035 171350698 -5623442 - L1PA5 LINE L1 -18 6136 5474 14238 133 19 16 chrX 171350698 171351728 -5622412 + Tigger1 DNA MER2_type 1374 2418 0 478 288 44 63 chrX 171353286 171353557 -5620583 - MLT1J1 LTR MaLR -174 272 7 21 0 0 0 chrX 171354016 171354037 -5620103 + AT_rich Low_complexity Low_complexity 1 21 0 764 242 153 21 chrX 171355488 171355981 -5618159 + MLT1G LTR MaLR 1 559 -8 903 265 8 41 chrX 171356385 171356653 -5617487 - MIR SINE MIR -2 260 2 434 274 88 29 chrX 171356708 171356872 -5617268 + MIR SINE MIR 3 173 -62 1486 136 16 0 chrX 171359328 171359579 -5614561 - L1MB1 LINE L1 -239 5929 5675 1982 136 16 48 chrX 171362792 171363168 -5610972 + THE1B LTR MaLR 1 364 0 12102 85 3 4 chrX 171363168 171364750 -5609390 + THE1B-int LTR MaLR 1 1580 0 1879 145 21 46 chrX 171364750 171365123 -5609017 + THE1B LTR MaLR 1 364 0 263 289 5 67 chrX 171365607 171365801 -5608339 - LTR41 LTR ERVL -591 182 1 333 305 161 6 chrX 171367210 171367384 -5606756 + MIR SINE MIR 41 241 -21 2125 110 4 0 chrX 171367502 171367816 -5606324 - AluSx SINE Alu 0 315 1 2239 122 27 19 chrX 171367996 171368366 -5605774 - THE1C LTR MaLR 0 375 3 295 93 0 0 chrX 171368846 171368889 -5605251 + Charlie4 DNA MER1_type 119 161 -1800 1898 258 27 20 chrX 171368889 171369447 -5604693 + MER68 LTR ERV1 1 562 0 418 300 25 67 chrX 171369448 171369504 -5604636 + MER68-int LTR ERV1 3 48 -4143 636 236 44 25 chrX 171369504 171369707 -5604433 + HERVL68 LTR ERVL 1 207 -2830 476 229 17 57 chrX 171369822 171369997 -5604143 + HERVL68 LTR ERVL 363 530 -2507 714 190 23 0 chrX 171370002 171370176 -5603964 + GA-rich Low_complexity Low_complexity 3 180 0 8032 180 81 48 chrX 171370176 171370217 -5603923 + HERVL68 LTR ERVL 495 533 -2504 837 99 0 0 chrX 171370217 171370338 -5603802 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 8032 180 81 48 chrX 171370338 171372439 -5601701 + HERVL68 LTR ERVL 533 2712 -325 216 0 0 0 chrX 171372439 171372463 -5601677 + (TG)n Simple_repeat Simple_repeat 1 24 0 8032 180 81 48 chrX 171372463 171372494 -5601646 + HERVL68 LTR ERVL 2712 2741 -296 310 203 40 27 chrX 171372516 171372590 -5601550 + Charlie4 DNA MER1_type 1887 1961 0 286 280 11 11 chrX 171372799 171372892 -5601248 + Tigger8 DNA MER2_type 504 596 -70 22 56 0 0 chrX 171373444 171373480 -5600660 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chrX 171375364 171375394 -5598746 + AT_rich Low_complexity Low_complexity 1 30 0 351 0 0 0 chrX 171375554 171375593 -5598547 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 275 0 11 chrX 171375765 171375856 -5598284 + MER5A DNA MER1_type 40 129 -60 194 261 22 0 chrX 171376457 171376503 -5597637 + MIR3 SINE MIR 144 190 -18 306 298 111 111 chrX 171377294 171378097 -5596043 + L1M2 LINE L1 543 1345 -5504 371 216 208 8 chrX 171378846 171378971 -5595169 + MER5A DNA MER1_type 40 189 0 215 269 90 26 chrX 171379011 171379089 -5595051 - L2 LINE L2 -16 3297 3215 1800 133 36 7 chrX 171379162 171379470 -5594670 - L1PA15 LINE L1 0 6165 5849 919 47 0 16 chrX 171379734 171379861 -5594279 + (TTCC)n Simple_repeat Simple_repeat 4 128 0 201 175 0 0 chrX 171379861 171379901 -5594239 + CT-rich Low_complexity Low_complexity 2 41 0 674 295 57 26 chrX 171380001 171380093 -5594047 + MIR SINE MIR 6 94 -168 1661 197 172 27 chrX 171380093 171380534 -5593606 - MLT1D LTR MaLR 0 505 1 674 295 57 26 chrX 171380534 171380668 -5593472 + MIR SINE MIR 94 239 -23 512 239 61 43 chrX 171381136 171381299 -5592841 + L2 LINE L2 3137 3302 -11 257 345 126 0 chrX 171381475 171381605 -5592535 + MIR SINE MIR 2 149 -62 2082 117 0 26 chrX 171383489 171383818 -5590322 - AluSx SINE Alu 0 312 2 229 250 0 0 chrX 171383853 171383901 -5590239 + L2 LINE L2 3261 3308 -5 633 50 0 0 chrX 171384070 171384150 -5589990 + MADE1 DNA Mariner 1 80 0 225 0 0 0 chrX 171384225 171384250 -5589890 + (TA)n Simple_repeat Simple_repeat 1 25 0 2207 132 8 8 chrX 171384304 171384676 -5589464 - L1MA4A LINE L1 0 6303 5932 318 283 102 18 chrX 171385045 171385211 -5588929 - LTR16C LTR ERVL -13 478 299 232 250 18 0 chrX 171385942 171385998 -5588142 - MLT1K LTR MaLR -110 478 422 938 289 143 24 chrX 171386027 171386784 -5587356 + L2 LINE L2 2455 3292 -21 216 0 0 0 chrX 171387015 171387039 -5587101 + (A)n Simple_repeat Simple_repeat 1 24 0 288 0 0 0 chrX 171387315 171387347 -5586793 + (TG)n Simple_repeat Simple_repeat 2 33 0 645 251 92 0 chrX 171388224 171388387 -5585753 + MER5A DNA MER1_type 11 188 -1 417 215 122 105 chrX 171388398 171388570 -5585570 - MER5B DNA MER1_type -3 175 1 222 37 0 0 chrX 171388607 171388634 -5585506 + (TAA)n Simple_repeat Simple_repeat 2 28 0 322 330 71 33 chrX 171389065 171389247 -5584893 + L2 LINE L2 2574 2762 -552 189 361 0 0 chrX 171389572 171389655 -5584485 + L2 LINE L2 2887 2969 -303 1008 275 73 3 chrX 171389978 171390265 -5583875 - MLT1I LTR MaLR -3 406 100 1821 94 8 0 chrX 171390752 171390986 -5583154 - AluSq SINE Alu -15 298 63 23354 26 3 0 chrX 171391971 171394912 -5579228 - L1PA3 LINE L1 -789 5357 2410 6680 42 0 4 chrX 171394912 171395719 -5578421 + L1PA3 LINE L1 5349 6155 0 207 316 34 60 chrX 171395884 171396001 -5578139 - L2 LINE L2 -341 2973 2860 822 285 54 47 chrX 171396720 171397186 -5576954 - MLT1J LTR MaLR -42 469 1 2131 106 0 17 chrX 171397394 171397686 -5576454 - AluSq SINE Alu -26 287 1 4093 182 15 25 chrX 171397814 171398962 -5575178 - L1MB7 LINE L1 -30 6154 5016 2602 227 61 21 chrX 171398963 171399057 -5575083 - L1MB7 LINE L1 -1735 4411 4322 2053 118 0 46 chrX 171399057 171399363 -5574777 + AluSx SINE Alu 1 292 -20 2602 227 61 21 chrX 171399363 171400020 -5574120 - L1MB7 LINE L1 -1824 4322 3630 348 205 3 0 chrX 171400020 171400107 -5574033 + L1P5 LINE L1 5709 5795 -356 345 291 40 45 chrX 171401057 171401256 -5572884 - MER90 LTR ERV1 -14 600 403 324 288 32 0 chrX 171401430 171401555 -5572585 - LTR65 LTR ERV1 -531 138 10 355 239 64 28 chrX 171401947 171402056 -5572084 + L2 LINE L2 3197 3309 -4 364 250 0 22 chrX 171402704 171402796 -5571344 - L1MC4 LINE L1 -1339 6703 6614 319 275 0 22 chrX 171402730 171402821 -5571319 + L1MC4 LINE L1 6614 6702 -1340 * 328 292 0 0 chrX 171402850 171402939 -5571201 + L1MC4 LINE L1 6614 6702 -1340 * 352 289 0 0 chrX 171402860 171402950 -5571190 - L1MC4 LINE L1 -1339 6703 6614 356 242 0 22 chrX 171402958 171403049 -5571091 - L1MC4 LINE L1 -1339 6703 6615 320 311 0 0 chrX 171402994 171403084 -5571056 + L1MC4 LINE L1 6614 6703 -1339 * 377 267 0 0 chrX 171403078 171403168 -5570972 - L1MC4 LINE L1 -1339 6703 6614 305 240 0 62 chrX 171403112 171403208 -5570932 + L1MC4 LINE L1 6614 6703 -1339 * 318 247 11 54 chrX 171403180 171403273 -5570867 - L1MC4 LINE L1 -1339 6703 6615 21 0 0 0 chrX 171403333 171403354 -5570786 + AT_rich Low_complexity Low_complexity 1 21 0 798 309 85 14 chrX 171403623 171403989 -5570151 - LTR16C LTR ERVL -1 490 99 736 250 0 11 chrX 171404682 171404858 -5569282 + MER5B DNA MER1_type 4 177 -1 519 353 161 16 chrX 171405714 171405800 -5568340 + L2 LINE L2 1701 1773 -1541 5949 102 13 19 chrX 171405800 171406497 -5567643 + L1PA16 LINE L1 4649 5348 -818 2419 97 0 0 chrX 171406497 171406805 -5567335 - AluY SINE Alu -3 308 1 5949 102 13 19 chrX 171406805 171407628 -5566512 + L1PA16 LINE L1 5348 6165 -1 519 353 161 16 chrX 171407628 171408105 -5566035 + L2 LINE L2 1773 2346 -968 197 309 25 25 chrX 171408114 171408195 -5565945 + L2 LINE L2 1850 1930 -1384 751 291 19 60 chrX 171409261 171409526 -5564614 + MIR SINE MIR 3 256 -6 2278 263 74 26 chrX 171409928 171410872 -5563268 + Zaphod DNA AcHobo 1 989 -3042 1085 170 27 12 chrX 171410875 171411134 -5563006 + MER33 DNA MER1_type 5 267 -57 721 213 78 30 chrX 171411157 171411425 -5562715 + Zaphod DNA AcHobo 3600 3880 -151 5271 214 44 20 chrX 171412588 171414533 -5559607 + L1MA4 LINE L1 1022 2920 -3774 2640 29 0 3 chrX 171414533 171414840 -5559300 + AluY SINE Alu 1 306 -5 5271 214 44 20 chrX 171414840 171415712 -5558428 + L1MA4 LINE L1 2920 6570 -124 2299 56 3 14 chrX 171415716 171416003 -5558137 + AluSc SINE Alu 1 284 -25 284 341 8 8 chrX 171416221 171416350 -5557790 - L1ME LINE L1 -503 5618 5490 1178 182 31 23 chrX 171416694 171416952 -5557188 + L1MA9 LINE L1 6053 6312 0 714 150 8 0 chrX 171416971 171417098 -5557042 + L1MA4 LINE L1 6165 6292 -8 2322 206 48 15 chrX 171417117 171417444 -5556696 + L1ME1 LINE L1 2740 3055 -3091 1847 171 0 19 chrX 171417444 171417759 -5556381 + AluJo SINE Alu 1 309 -3 2322 206 48 15 chrX 171417759 171418153 -5555987 + L1ME1 LINE L1 3055 3485 -2661 * 3293 233 31 19 chrX 171418142 171419356 -5554784 + L1ME1 LINE L1 4419 5664 -502 1027 212 18 26 chrX 171419356 171419582 -5554558 - MER58A DNA MER1_type 0 224 1 3293 233 31 19 chrX 171419582 171420041 -5554099 + L1ME1 LINE L1 5664 6116 -50 12106 152 7 11 chrX 171420143 171423092 -5551048 - L1PA13 LINE L1 0 6814 3881 6936 183 12 8 chrX 171423128 171424454 -5549686 - L1PA13 LINE L1 -3452 3345 2014 2027 175 20 25 chrX 171424746 171425145 -5548995 - L1PA13 LINE L1 -4790 1997 1601 237 171 0 0 chrX 171425156 171425197 -5548943 - MER94 DNA DNA -93 41 1 180 265 59 15 chrX 171425207 171425275 -5548865 - MIR SINE MIR -79 183 113 2194 274 50 96 chrX 171425428 171426698 -5547442 - L2 LINE L2 -248 3065 1853 911 224 51 5 chrX 171427818 171428014 -5546126 + MER63A DNA MER1_type 1 205 -5 354 253 32 11 chrX 171428328 171428423 -5545717 - MLT1J2 LTR MaLR -352 98 2 22 56 0 0 chrX 171429011 171429047 -5545093 + AT_rich Low_complexity Low_complexity 1 36 0 183 286 0 71 chrX 171429197 171429281 -5544859 + L3b LINE CR1 1109 1186 -397 1803 114 0 0 chrX 171429796 171430033 -5544107 + AluSx SINE Alu 1 237 -75 1019 157 0 69 chrX 171430097 171430313 -5543827 - MER3 DNA MER1_type 0 209 9 1081 278 25 80 chrX 171431006 171431257 -5542883 + L2 LINE L2 2633 2896 -417 2185 111 7 0 chrX 171431257 171431546 -5542594 - AluSc SINE Alu -18 291 1 1081 278 25 80 chrX 171431546 171432006 -5542134 + L2 LINE L2 2896 3313 0 455 364 6 0 chrX 171432091 171432264 -5541876 - MIR3 SINE MIR -1 207 34 364 257 29 36 chrX 171432265 171432405 -5541735 + MARNA DNA Mariner 337 475 -111 188 288 17 0 chrX 171434052 171434111 -5540029 - MIR SINE MIR -23 239 180 216 0 0 0 chrX 171434543 171434567 -5539573 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 270 308 0 39 chrX 171434679 171434757 -5539383 - L2 LINE L2 -2 3311 3237 1027 258 79 41 chrX 171434972 171435364 -5538776 + MLT1J2 LTR MaLR 44 450 0 14285 134 28 14 chrX 171435588 171437970 -5536170 - Tigger1 DNA MER2_type 0 2418 3 634 333 110 48 chrX 171438093 171438801 -5535339 + L2 LINE L2 2152 2903 -411 700 172 55 16 chrX 171438821 171438949 -5535191 - FLAM_C SINE Alu 0 133 1 307 350 29 7 chrX 171439123 171439263 -5534877 + L2 LINE L2 3167 3309 -4 262 264 160 57 chrX 171439472 171439578 -5534562 - MIR SINE MIR -118 144 28 222 118 0 0 chrX 171441120 171441154 -5532986 + (T)n Simple_repeat Simple_repeat 1 34 0 558 313 30 0 chrX 171441346 171441512 -5532628 + MER91A DNA MER1_type 1 171 -25 246 345 12 36 chrX 171441536 171441620 -5532520 + MER91B DNA MER1_type 109 190 0 294 228 0 0 chrX 171441707 171441764 -5532376 - LTR16A1 LTR ERVL 0 457 401 551 239 0 18 chrX 171441764 171441877 -5532263 + MER81 DNA DNA 1 111 -3 1085 262 65 52 chrX 171441880 171442281 -5531859 - LTR16A1 LTR ERVL -51 406 1 462 179 0 12 chrX 171442630 171442714 -5531426 - MER81 DNA DNA -1 113 31 479 255 120 38 chrX 171443703 171443887 -5530253 + MIR SINE MIR 8 206 -56 251 353 144 0 chrX 171444036 171444156 -5529984 + MIR SINE MIR 1 136 -72 * 696 294 136 30 chrX 171444144 171444474 -5529666 + L2 LINE L2 2949 3313 0 256 254 16 0 chrX 171444487 171444550 -5529590 + MIR3 SINE MIR 135 198 -10 847 297 81 30 chrX 171445614 171446011 -5528129 + MLT1J2 LTR MaLR 34 450 0 2793 232 32 7 chrX 171446671 171447599 -5526541 - L1MCa LINE L1 -3259 3167 2220 2607 89 5 22 chrX 171447599 171447968 -5526172 + THE1C LTR MaLR 1 363 -12 10204 103 31 35 chrX 171447978 171449564 -5524576 + THE1C-int LTR MaLR 1 1580 0 2639 95 8 16 chrX 171449564 171449942 -5524198 + THE1C LTR MaLR 1 375 0 735 233 91 89 chrX 171449942 171450421 -5523719 - L1MCa LINE L1 -4204 2222 1739 5260 85 5 11 chrX 171450421 171451159 -5522981 - L1PB1 LINE L1 0 6151 5418 735 233 91 89 chrX 171451159 171451468 -5522672 - L1MCa LINE L1 -4687 1739 1432 357 184 0 92 chrX 171451470 171451557 -5522583 + MLT1C LTR MaLR 1 79 -388 805 172 97 27 chrX 171451646 171451832 -5522308 - L1PB4 LINE L1 -2 6154 5956 1486 198 129 16 chrX 171451832 171452195 -5521945 + MLT1C LTR MaLR 64 467 0 2013 198 46 2 chrX 171452195 171452670 -5521470 - L1MCa LINE L1 -4992 1434 939 864 159 26 0 chrX 171452670 171452821 -5521319 - MLT1B LTR MaLR -2 388 234 2111 95 0 7 chrX 171453259 171453572 -5520568 + AluSx SINE Alu 1 311 0 2148 242 56 39 chrX 171453768 171454459 -5519681 + L1ME3A LINE L1 5455 6157 -13 1878 232 15 30 chrX 171454719 171455184 -5518956 + MLT1C LTR MaLR 7 464 -3 264 308 172 18 chrX 171456116 171456337 -5517803 + L2 LINE L2 2592 2846 -468 251 288 93 50 chrX 171456540 171456679 -5517461 + L2 LINE L2 3169 3313 0 1555 270 91 15 chrX 171456809 171457358 -5516782 - MLT1E LTR MaLR 0 593 3 2470 267 57 37 chrX 171457644 171458052 -5516088 - L2 LINE L2 0 3313 2915 2462 86 0 0 chrX 171458052 171458356 -5515784 - AluSg SINE Alu -6 304 1 2470 267 57 37 chrX 171458356 171459082 -5515058 - L2 LINE L2 -398 2915 2147 251 247 90 11 chrX 171459401 171459490 -5514650 - MER5A DNA MER1_type -68 121 26 2174 96 28 3 chrX 171459803 171460094 -5514046 + AluSx SINE Alu 1 298 -14 356 333 17 17 chrX 171460194 171460314 -5513826 + MLT1I LTR MaLR 99 218 -191 309 200 62 12 chrX 171460431 171460511 -5513629 + MLT1I LTR MaLR 318 401 -8 191 244 22 0 chrX 171461061 171461106 -5513034 + L2 LINE L2 3218 3263 -9 271 206 16 16 chrX 171461875 171461938 -5512202 + MER103 DNA DNA 24 86 -80 1174 171 41 26 chrX 171461953 171462222 -5511918 - ORSL DNA AcHobo -1 274 2 367 364 83 16 chrX 171462464 171462777 -5511363 - L2 LINE L2 -962 2352 2019 826 296 58 14 chrX 171462830 171463195 -5510945 + L1ME4a LINE L1 5509 5889 -232 1773 184 13 72 chrX 171463262 171463735 -5510405 + MER65A LTR ERV1 1 445 0 302 256 53 45 chrX 171463744 171463855 -5510285 + L1ME4a LINE L1 5985 6099 -22 1366 188 80 7 chrX 171463855 171464131 -5510009 - AluJo SINE Alu -16 296 1 302 256 53 45 chrX 171464131 171464152 -5509988 + L1ME4a LINE L1 6099 6118 -3 181 373 130 16 chrX 171464161 171464730 -5509410 - L2 LINE L2 -1313 2001 1368 279 309 223 24 chrX 171464905 171465281 -5508859 - L2 LINE L2 -2425 889 439 974 164 0 0 chrX 171465916 171466062 -5508078 + FRAM SINE Alu 1 146 -30 558 284 70 59 chrX 171466127 171466553 -5507587 + LTR67 LTR ERVL 123 553 -4 1839 215 64 35 chrX 171466603 171467151 -5506989 + L1ME3A LINE L1 5599 6162 -8 253 229 152 19 chrX 171467168 171467273 -5506867 - MIR3 SINE MIR -81 127 9 * 281 281 74 30 chrX 171467254 171467389 -5506751 - MIR SINE MIR -67 195 55 331 250 0 33 chrX 171467500 171467592 -5506548 + L1MC4a LINE L1 5840 5928 -1880 1089 168 45 5 chrX 171468036 171468238 -5505902 + L1PB4 LINE L1 5935 6144 -12 2536 246 83 24 chrX 171469378 171469438 -5504702 - L1ME3 LINE L1 -12 6150 6095 351 0 0 0 chrX 171469438 171469477 -5504663 + (CA)n Simple_repeat Simple_repeat 2 40 0 2536 246 83 24 chrX 171469477 171470206 -5503934 - L1ME3 LINE L1 -67 6095 5314 516 154 15 69 chrX 171520437 171520567 -5453573 - L1MA7 LINE L1 -239 6052 5930 2008 120 49 27 chrX 171520643 171521010 -5453130 - THE1C LTR MaLR 0 375 1 675 290 41 55 chrX 171521607 171522241 -5451899 + L1M4 LINE L1 2206 2830 -3316 1639 211 69 17 chrX 171522265 171522686 -5451454 + LTR40b LTR ERVL 8 450 -12 7639 179 28 50 chrX 171522737 171524239 -5449901 + L1PA15 LINE L1 2903 4436 -1729 2262 118 0 0 chrX 171524239 171524544 -5449596 + AluSq SINE Alu 1 305 -8 7639 179 28 50 chrX 171524544 171525830 -5448310 + L1PA15 LINE L1 4436 5674 -491 2161 129 7 0 chrX 171525830 171526124 -5448016 + AluSx SINE Alu 1 296 -16 7639 179 28 50 chrX 171526124 171526576 -5447564 + L1PA15 LINE L1 5674 6134 -31 2509 139 17 49 chrX 171526573 171526829 -5447311 + L1MA9 LINE L1 5064 5327 -985 * 2071 72 36 7 chrX 171526829 171527092 -5447048 + AluSp SINE Alu 15 130 -183 195 42 0 0 chrX 171527092 171527116 -5447024 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2071 72 36 7 chrX 171527116 171527306 -5446834 + AluSp SINE Alu 130 313 0 2509 139 17 49 chrX 171527306 171527738 -5446402 + L1MA9 LINE L1 5327 5746 -566 291 171 57 7 chrX 171527748 171527888 -5446252 + (TA)n Simple_repeat Simple_repeat 2 148 0 2638 131 8 45 chrX 171527924 171528354 -5445786 + L1MA9 LINE L1 5776 6186 -126 2210 92 48 0 chrX 171528354 171528647 -5445493 - AluSx SINE Alu -4 308 2 2638 131 8 45 chrX 171528647 171528728 -5445412 + L1MA9 LINE L1 6186 6268 -44 7346 105 7 4 chrX 171528728 171529953 -5444187 + HSMAR1 DNA Mariner 1 1280 -7 4809 174 56 34 chrX 171529984 171531453 -5442687 + L1MC1 LINE L1 4832 6332 -1 387 300 8 0 chrX 171531458 171531588 -5442552 + L1ME LINE L1 5317 5447 -717 7629 28 0 1 chrX 171531598 171533199 -5440941 - L1PA3 LINE L1 0 6155 4556 4335 23 0 0 chrX 171533199 171533731 -5440409 + L1P LINE L1 3829 4360 -1786 339 274 129 5 chrX 171533724 171533925 -5440215 + L1ME LINE L1 5431 5656 -510 * 294 87 0 0 chrX 171533932 171533978 -5440162 + (TCTCTG)n Simple_repeat Simple_repeat 3 48 0 * 411 21 0 0 chrX 171533977 171534025 -5440115 + (CA)n Simple_repeat Simple_repeat 1 48 0 2471 74 3 3 chrX 171534999 171535310 -5438830 + AluSp SINE Alu 1 311 -2 2495 53 0 10 chrX 171535311 171535614 -5438526 + AluY SINE Alu 2 301 -10 1298 194 51 6 chrX 171535841 171536196 -5437944 - MER114 LTR ERV -53 595 225 676 186 0 16 chrX 171536215 171536344 -5437796 + FLAM_A SINE Alu 9 135 -7 1045 177 41 64 chrX 171536466 171536810 -5437330 + L1MC5 LINE L1 7249 7584 -377 702 286 72 19 chrX 171536978 171537341 -5436799 - L1MC5 LINE L1 -424 7537 7156 34 65 0 0 chrX 171537365 171537427 -5436713 + AT_rich Low_complexity Low_complexity 1 62 0 655 216 8 0 chrX 171537437 171537562 -5436578 - FLAM_A SINE Alu -6 127 2 21 0 0 0 chrX 171538291 171538312 -5435828 + AT_rich Low_complexity Low_complexity 1 21 0 413 351 71 38 chrX 171538556 171538603 -5435537 + L3 LINE CR1 229 273 -1304 1664 91 45 0 chrX 171538603 171538823 -5435317 - MER30 DNA MER1_type 0 230 1 413 351 71 38 chrX 171538823 171539014 -5435126 + L3 LINE CR1 273 475 -1102 1492 229 71 55 chrX 171539014 171539507 -5434633 - MLT2B1 LTR ERVL -2 518 18 319 302 132 8 chrX 171539526 171539655 -5434485 + L3 LINE CR1 466 610 -967 2317 82 0 0 chrX 171539988 171540280 -5433860 + AluSx SINE Alu 1 292 -20 297 0 0 0 chrX 171540281 171540293 -5433847 + (TG)n Simple_repeat Simple_repeat 1 45 0 297 0 0 0 chrX 171540293 171540326 -5433814 + (TG)n Simple_repeat Simple_repeat 2 34 0 2571 42 0 7 chrX 171540550 171540859 -5433281 + AluY SINE Alu 1 307 -4 399 207 28 28 chrX 171540876 171541130 -5433010 + GA-rich Low_complexity Low_complexity 1 254 0 923 69 28 0 chrX 171541360 171541505 -5432635 + (TTTC)n Simple_repeat Simple_repeat 1 149 0 1808 140 0 4 chrX 171541987 171542252 -5431888 + AluSp SINE Alu 1 264 -49 1289 179 2 16 chrX 171542483 171542910 -5431230 + MLT1D LTR MaLR 29 491 -14 248 250 94 10 chrX 171543660 171543756 -5430384 - L2 LINE L2 0 3313 3210 833 258 27 76 chrX 171543881 171544156 -5429984 + MIR SINE MIR 6 262 0 543 262 209 36 chrX 171544310 171544669 -5429471 + LTR16A LTR ERVL 18 438 -12 1745 177 12 15 chrX 171544718 171545057 -5429083 - MER58B DNA MER1_type -3 338 1 2407 95 0 0 chrX 171545248 171545552 -5428588 - AluSq SINE Alu -9 304 1 2235 100 3 7 chrX 171545966 171546265 -5427875 - AluSq SINE Alu -15 298 1 487 298 32 115 chrX 171547615 171547927 -5426213 - L2 LINE L2 -1 3271 2986 226 333 9 61 chrX 171548160 171548274 -5425866 + L2 LINE L2 3155 3262 -10 3720 247 124 25 chrX 171549965 171550055 -5424085 + HAL1 LINE L1 12 92 -2415 351 44 0 0 chrX 171550055 171550100 -5424040 + (CA)n Simple_repeat Simple_repeat 2 46 0 3720 247 124 25 chrX 171550100 171550215 -5423925 + HAL1 LINE L1 92 194 -2313 2222 90 65 8 chrX 171550215 171550570 -5423570 + THE1C LTR MaLR 1 375 0 3720 247 124 25 chrX 171550570 171551977 -5422163 + HAL1 LINE L1 194 1786 -721 901 343 14 25 chrX 171551982 171552346 -5421794 + MER115 DNA AcHobo 5 364 -329 437 260 119 40 chrX 171552432 171552659 -5421481 + HAL1 LINE L1 1788 2032 -475 673 180 93 0 chrX 171552667 171552817 -5421323 + MER3 DNA MER1_type 1 164 -45 2273 119 7 0 chrX 171552918 171553228 -5420912 - AluSx SINE Alu 0 312 1 2362 105 0 0 chrX 171553382 171553686 -5420454 + AluSx SINE Alu 1 304 -8 444 186 167 0 chrX 171553933 171554035 -5420105 + MER3 DNA MER1_type 2 120 -89 216 67 0 0 chrX 171554038 171554068 -5420072 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 237 188 21 0 chrX 171554068 171554116 -5420024 - MER3 DNA MER1_type -120 89 41 2007 129 44 0 chrX 171554164 171554459 -5419681 + AluJo SINE Alu 1 308 -4 235 209 0 146 chrX 171554497 171554607 -5419533 + HAL1 LINE L1 2091 2184 -323 667 254 113 24 chrX 171554773 171555064 -5419076 + HAL1 LINE L1 2185 2501 -6 25 51 0 0 chrX 171555064 171555103 -5419037 + AT_rich Low_complexity Low_complexity 1 39 0 2291 94 0 3 chrX 171555112 171555410 -5418730 + AluSx SINE Alu 1 297 -15 238 354 173 10 chrX 171556159 171556679 -5417461 - L2 LINE L2 -452 2862 2258 2276 83 3 23 chrX 171556888 171557190 -5416950 + AluSg SINE Alu 1 296 -14 23 0 0 0 chrX 171557344 171557367 -5416773 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chrX 171557394 171557418 -5416722 + (CA)n Simple_repeat Simple_repeat 1 24 0 229 286 71 0 chrX 171557435 171557491 -5416649 + MIR SINE MIR 19 78 -130 509 254 144 17 chrX 171557525 171557706 -5416434 - MIR SINE MIR -3 259 56 289 317 10 0 chrX 171557711 171557812 -5416328 + MIR3 SINE MIR 104 205 -3 2289 94 3 0 chrX 171558056 171558487 -5415653 + AluSp SINE Alu 1 432 0 2077 107 0 30 chrX 171558494 171558793 -5415347 + AluSx SINE Alu 1 290 -22 202 156 31 0 chrX 171559136 171559200 -5414940 + (TA)n Simple_repeat Simple_repeat 1 66 0 1069 185 42 0 chrX 171559500 171559765 -5414375 - L1MA8 LINE L1 -2 6289 6014 867 234 72 5 chrX 171559880 171560089 -5414051 - MER58A DNA MER1_type -1 223 1 476 321 0 0 chrX 171560262 171560396 -5413744 - MIR SINE MIR -108 154 21 2196 116 0 0 chrX 171560793 171561115 -5413025 + AluSx SINE Alu 1 322 0 194 288 150 40 chrX 171561121 171561347 -5412793 + L2 LINE L2 2726 2976 -338 318 197 0 0 chrX 171562062 171562128 -5412012 - L1ME LINE L1 -536 5585 5520 642 200 93 71 chrX 171563238 171563518 -5410622 + L1MC4 LINE L1 7627 7912 -130 306 258 33 0 chrX 171563596 171563716 -5410424 + L1MC4 LINE L1 7919 8042 0 21 57 0 0 chrX 171565311 171565346 -5408794 + AT_rich Low_complexity Low_complexity 1 35 0 2505 53 0 0 chrX 171565349 171565652 -5408488 + AluY SINE Alu 1 303 -8 736 317 52 3 chrX 171565685 171565994 -5408146 + L1MC/D LINE L1 5483 5806 -2002 2357 101 3 0 chrX 171565994 171566300 -5407840 + AluSx SINE Alu 1 307 -5 6294 92 1 1 chrX 171566410 171567235 -5406905 - L1MA2 LINE L1 0 6304 5480 285 29 0 0 chrX 171567633 171567667 -5406473 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2275 81 35 0 chrX 171568816 171569100 -5405040 + AluSx SINE Alu 1 294 -18 286 134 30 0 chrX 171569132 171569199 -5404941 + (TA)n Simple_repeat Simple_repeat 1 69 0 207 0 0 0 chrX 171569199 171569222 -5404918 + (CA)n Simple_repeat Simple_repeat 2 24 0 253 352 16 8 chrX 171569323 171569448 -5404692 + L2 LINE L2 1867 1992 -1322 4126 140 5 2 chrX 171569521 171570120 -5404020 - MER7C DNA MER2_type -1 601 1 269 286 123 23 chrX 171570232 171570403 -5403737 - L1MC4a LINE L1 -1873 5935 5748 2131 102 7 0 chrX 171570581 171570885 -5403255 + AluSq SINE Alu 1 306 0 833 130 0 87 chrX 171570895 171571033 -5403107 + Tigger3(Golem) DNA MER2_type 1 126 -2903 2399 76 0 3 chrX 171571062 171571363 -5402777 + AluSc SINE Alu 1 300 -9 1370 44 0 0 chrX 171572439 171572598 -5401542 - L1PA4 LINE L1 -3 6152 5994 2268 153 43 19 chrX 171573036 171573104 -5401036 - MSTB1 LTR MaLR 0 432 367 2329 104 0 3 chrX 171573104 171573413 -5400727 + AluSp SINE Alu 1 308 -5 2268 153 43 19 chrX 171573413 171573762 -5400378 - MSTB1 LTR MaLR -65 367 5 3038 201 27 5 chrX 171573766 171574319 -5399821 - MSTB1-int LTR MaLR 0 1651 1087 1816 255 35 11 chrX 171574322 171574757 -5399383 - MSTB1-int LTR MaLR -736 915 471 2663 115 23 23 chrX 171574800 171575040 -5399100 - L1MA2 LINE L1 0 6304 6062 2070 127 7 7 chrX 171575040 171575348 -5398792 - AluSx SINE Alu -4 308 1 2663 115 23 23 chrX 171575348 171575534 -5398606 - L1MA2 LINE L1 -241 6063 5878 717 100 0 0 chrX 171575534 171575661 -5398479 - AluSg SINE Alu 0 334 208 1032 100 7 7 chrX 171575661 171575801 -5398339 - AluSg SINE Alu -170 140 1 3424 93 6 21 chrX 171575801 171576284 -5397856 - L1MA2 LINE L1 -417 5888 5413 1492 191 11 4 chrX 171576273 171576545 -5397595 - MSTB1-int LTR MaLR -1167 484 211 * 386 182 0 26 chrX 171576550 171576627 -5397513 - MSTB1-int LTR MaLR -1576 75 1 2295 162 69 10 chrX 171576627 171577035 -5397105 - MSTB1 LTR MaLR 0 432 1 528 191 13 102 chrX 171578361 171578518 -5395622 + L1MA9 LINE L1 6132 6274 -38 526 239 187 19 chrX 171578536 171578691 -5395449 - MER5A DNA MER1_type 0 189 9 535 257 102 29 chrX 171578751 171578957 -5395183 - MIR SINE MIR -13 249 29 25 0 0 0 chrX 171579400 171579425 -5394715 + AT_rich Low_complexity Low_complexity 1 25 0 2273 96 3 7 chrX 171579637 171579938 -5394202 + AluSx SINE Alu 1 300 -12 198 255 0 20 chrX 171580003 171580054 -5394086 - L2 LINE L2 -1 3312 3263 334 239 77 34 chrX 171580820 171580937 -5393203 - MER5A DNA MER1_type -28 161 40 214 250 0 0 chrX 171580958 171581002 -5393138 + MER5B DNA MER1_type 1 44 -134 1104 129 12 0 chrX 171581002 171581165 -5392975 - AluJb SINE Alu -2 310 146 393 219 47 70 chrX 171581165 171581293 -5392847 - MER5B DNA MER1_type -37 141 17 304 193 0 0 chrX 171581323 171581380 -5392760 - Charlie1a DNA MER1_type -1 1454 1398 881 173 68 0 chrX 171581381 171581543 -5392597 + FAM SINE Alu 1 47 -2 5745 174 58 84 chrX 171581543 171582668 -5391472 - Charlie1a DNA MER1_type -1356 1405 238 530 60 12 83 chrX 171582668 171582791 -5391349 - AluSc SINE Alu 0 309 215 5745 174 58 84 chrX 171582791 171583024 -5391116 - Charlie1a DNA MER1_type -2523 238 1 338 306 118 18 chrX 171583144 171583314 -5390826 - MIR SINE MIR -75 187 1 478 269 132 42 chrX 171583343 171583555 -5390585 - MIR SINE MIR -3 259 29 2376 70 3 0 chrX 171583575 171583883 -5390257 + AluSp SINE Alu 1 309 0 252 262 39 19 chrX 171586413 171586516 -5387624 + L1MC4 LINE L1 5824 5928 -1880 247 250 25 0 chrX 171586537 171586617 -5387523 - L1MC4 LINE L1 -1347 6695 6614 276 154 0 0 chrX 171586619 171586671 -5387469 + (TA)n Simple_repeat Simple_repeat 2 53 0 238 217 0 94 chrX 171586742 171586832 -5387308 + L1MC4 LINE L1 6614 6694 -1348 2883 7 0 0 chrX 171586832 171587142 -5386998 - AluYa5 SINE Alu -1 310 1 238 217 0 94 chrX 171587142 171587157 -5386983 + L1MC4 LINE L1 6694 6709 -1333 265 184 52 37 chrX 171587163 171587299 -5386841 + (TA)n Simple_repeat Simple_repeat 2 139 0 300 326 39 8 chrX 171587430 171587559 -5386581 + L1ME4a LINE L1 5987 6119 -2 760 183 9 0 chrX 171588363 171588478 -5385662 - FLAM_C SINE Alu -26 117 2 240 184 0 41 chrX 171588630 171588679 -5385461 - MLT1A1 LTR MaLR 0 365 319 6477 69 31 53 chrX 171588687 171591058 -5383082 + SVA Other Other 56 1386 0 228 345 59 47 chrX 171591926 171592181 -5381959 - L2 LINE L2 -172 3100 2843 2391 85 0 13 chrX 171592473 171592609 -5381531 + AluSx SINE Alu 1 137 -175 2306 85 0 52 chrX 171592609 171592939 -5381201 + AluSp SINE Alu 1 313 0 2391 85 0 13 chrX 171592939 171593108 -5381032 + AluSx SINE Alu 137 302 -10 2205 93 7 0 chrX 171593304 171593613 -5380527 + AluSq SINE Alu 1 311 0 344 194 25 0 chrX 171593618 171593706 -5380434 + L1M1 LINE L1 5382 5470 -681 876 311 44 6 chrX 171593709 171594027 -5380113 + L1MC4a LINE L1 5583 5912 -1896 214 147 0 0 chrX 171594057 171594091 -5380049 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chrX 171594256 171594278 -5379862 + AT_rich Low_complexity Low_complexity 1 22 0 2144 136 0 0 chrX 171594708 171595017 -5379123 + AluJb SINE Alu 1 309 -3 1759 88 18 13 chrX 171595206 171595433 -5378707 + MER30 DNA MER1_type 2 229 -1 1937 150 63 92 chrX 171596062 171596488 -5377652 - MLT2D LTR ERVL 0 414 1 970 268 139 31 chrX 171596534 171596922 -5377218 - MLT1J LTR MaLR -52 459 30 205 240 120 53 chrX 171596934 171597009 -5377131 + MER91B DNA MER1_type 2 81 -109 203 194 119 45 chrX 171597201 171597268 -5376872 + MER91B DNA MER1_type 9 80 -110 2583 78 3 0 chrX 171597482 171597815 -5376325 + MER4C LTR ERV1 1 334 -131 504 284 28 60 chrX 171597890 171598006 -5376134 - MIR SINE MIR -6 256 138 2158 128 0 0 chrX 171598006 171598312 -5375828 - AluSx SINE Alu -6 306 1 504 284 28 60 chrX 171598312 171598340 -5375800 - MIR SINE MIR -124 138 111 2166 113 10 3 chrX 171598340 171598641 -5375499 + AluSx SINE Alu 1 303 -9 504 284 28 60 chrX 171598641 171598658 -5375482 - MIR SINE MIR -151 111 95 1940 131 3 29 chrX 171598658 171598964 -5375176 + AluJo SINE Alu 1 298 -14 504 284 28 60 chrX 171598964 171599015 -5375125 - MIR SINE MIR -167 95 49 2080 90 52 21 chrX 171599336 171599624 -5374516 + AluSq SINE Alu 1 297 -16 2256 75 3 20 chrX 171600265 171600570 -5373570 + AluY SINE Alu 1 300 -11 21 0 0 0 chrX 171600716 171600737 -5373403 + AT_rich Low_complexity Low_complexity 1 21 0 675 197 184 0 chrX 171601067 171601219 -5372921 + L1ME2 LINE L1 37 216 -6180 2865 204 60 36 chrX 171601221 171601769 -5372371 + L1ME2 LINE L1 3823 4495 -1720 1783 151 0 15 chrX 171601769 171602041 -5372099 + AluJb SINE Alu 17 284 -28 2865 204 60 36 chrX 171602041 171602352 -5371788 + L1ME2 LINE L1 4495 4797 -1418 2405 161 27 3 chrX 171602390 171602756 -5371384 + Tigger7 DNA MER2_type 1 375 -358 1410 151 0 91 chrX 171602747 171602786 -5371354 + Tigger7 DNA MER2_type 2216 2257 -230 * 456 73 59 0 chrX 171602786 171602854 -5371286 + L1MA5 LINE L1 6229 6300 0 1410 151 0 91 chrX 171602854 171603112 -5371028 + Tigger7 DNA MER2_type 2257 2486 -1 2344 199 88 22 chrX 171603123 171604084 -5370056 + L1ME2 LINE L1 4835 5847 -388 848 164 0 8 chrX 171604084 171604212 -5369928 + FLAM_A SINE Alu 1 127 -6 2344 199 88 22 chrX 171604212 171604260 -5369880 + L1ME2 LINE L1 5847 5890 -345 1441 189 4 15 chrX 171604259 171604524 -5369616 + L1M3f LINE L1 1 262 -5066 * 5042 125 53 26 chrX 171605336 171606171 -5367969 + L1M3f LINE L1 251 1107 -4221 685 236 28 16 chrX 171606166 171606348 -5367792 + L1ME2 LINE L1 5883 6066 -167 * 2433 81 0 0 chrX 171606720 171607017 -5367123 - AluSg SINE Alu -13 297 1 2612 169 9 23 chrX 171607439 171607871 -5366269 + MSTB LTR MaLR 1 426 0 1860 124 0 25 chrX 171607976 171608258 -5365882 + AluSx SINE Alu 1 275 -37 309 51 0 0 chrX 171608296 171608335 -5365805 + (CAAAA)n Simple_repeat Simple_repeat 1 39 0 675 203 68 80 chrX 171608340 171608577 -5365563 - LTR41 LTR ERVL -61 712 479 1938 146 60 101 chrX 171608577 171608860 -5365280 + LTR54B LTR ERV1 1 255 -243 2690 33 3 0 chrX 171608860 171609166 -5364974 + AluY SINE Alu 1 307 -4 1938 146 60 101 chrX 171609166 171609397 -5364743 + LTR54B LTR ERV1 255 494 -4 1418 220 154 23 chrX 171609397 171609825 -5364315 - LTR41 LTR ERVL -289 484 1 1342 217 101 3 chrX 171610457 171610830 -5363310 - MER110A LTR ERV1 0 468 93 388 153 14 0 chrX 171610836 171610908 -5363232 + L1MA2 LINE L1 4116 4188 -1958 1857 133 26 0 chrX 171610908 171611036 -5363104 + AluSx SINE Alu 1 124 -188 252 0 0 0 chrX 171611036 171611064 -5363076 + (TAA)n Simple_repeat Simple_repeat 2 29 0 1857 133 26 0 chrX 171611064 171611205 -5362935 + AluSx SINE Alu 124 277 -35 6984 107 7 37 chrX 171611214 171611644 -5362496 + L1MA2 LINE L1 5120 5561 -743 2612 46 0 3 chrX 171611644 171611948 -5362192 + AluY SINE Alu 1 303 -8 6984 107 7 37 chrX 171611948 171612739 -5361401 + L1MA2 LINE L1 5561 6304 0 49 18 0 0 chrX 171612739 171612795 -5361345 + AT_rich Low_complexity Low_complexity 1 56 0 2340 70 0 3 chrX 171612803 171613116 -5361024 + AluY SINE Alu 1 312 0 240 174 72 58 chrX 171613126 171613195 -5360945 - MER110A LTR ERV1 -398 70 1 922 242 24 0 chrX 171613340 171613551 -5360589 - MIR SINE MIR -46 216 1 203 383 21 11 chrX 171613615 171613709 -5360431 - MIR3 SINE MIR -99 109 15 3414 136 117 22 chrX 171614392 171614988 -5359152 + MER39B LTR ERV1 1 653 0 2330 83 3 13 chrX 171616486 171616800 -5357340 + AluSx SINE Alu 1 311 -1 608 173 6 110 chrX 171617098 171617271 -5356869 + MLT1D LTR MaLR 1 155 -471 1617 171 77 23 chrX 171618146 171618510 -5355630 + MLT1D LTR MaLR 116 501 -4 243 0 0 0 chrX 171619057 171619084 -5355056 + (CA)n Simple_repeat Simple_repeat 2 28 0 696 202 12 20 chrX 171619088 171619240 -5354900 + MSTC LTR MaLR 1 150 -276 1086 131 0 0 chrX 171619241 171619394 -5354746 + AluSx SINE Alu 1 153 -159 2627 58 0 3 chrX 171619791 171620101 -5354039 - AluY SINE Alu -2 309 1 258 206 82 0 chrX 171620204 171620277 -5353863 - L1M4 LINE L1 -1537 4609 4531 1982 154 0 3 chrX 171620396 171620701 -5353439 - AluJb SINE Alu -8 304 1 503 61 0 0 chrX 171620984 171621050 -5353090 - L1P LINE L1 -745 5429 5364 5027 83 3 25 chrX 171621050 171621759 -5352381 + L1PA10 LINE L1 5465 6157 -11 2363 95 13 0 chrX 171621944 171622248 -5351892 - AluSq SINE Alu -5 308 1 673 153 57 24 chrX 171622387 171622511 -5351629 - FLAM_A SINE Alu -5 137 10 2547 50 0 7 chrX 171622525 171622825 -5351315 - AluY SINE Alu -13 298 1 23 0 0 0 chrX 171622921 171622944 -5351196 + AT_rich Low_complexity Low_complexity 1 23 0 2200 113 0 10 chrX 171623150 171623461 -5350679 - AluSx SINE Alu -4 308 1 2606 43 7 0 chrX 171623484 171623784 -5350356 + AluY SINE Alu 1 302 -9 255 360 50 14 chrX 171624199 171624338 -5349802 + MIR3 SINE MIR 3 146 -62 1776 172 20 3 chrX 171624690 171624987 -5349153 + AluJb SINE Alu 1 302 -10 2121 107 3 17 chrX 171625189 171625524 -5348616 + AluSx SINE Alu 1 331 0 257 308 56 47 chrX 171625524 171625738 -5348402 - L2 LINE L2 -239 3033 2818 3507 108 10 10 chrX 171626752 171627263 -5346877 - MER9 LTR ERVK 0 511 1 476 287 92 56 chrX 171627281 171627460 -5346680 + MLT1H LTR MaLR 1 193 -356 2508 61 0 3 chrX 171627460 171627757 -5346383 - AluY SINE Alu -15 296 1 476 287 92 56 chrX 171627757 171627828 -5346312 + MLT1H LTR MaLR 193 260 -289 2349 93 0 13 chrX 171628413 171628715 -5345425 + AluSq SINE Alu 1 298 -15 3565 83 49 10 chrX 171628997 171629504 -5344636 + L1PA10 LINE L1 5641 6167 -1 700 244 70 94 chrX 171629509 171629923 -5344217 - MLT1H LTR MaLR -38 511 108 2454 75 7 3 chrX 171631170 171631476 -5342664 + AluSp SINE Alu 1 307 -6 2178 143 17 3 chrX 171631479 171631837 -5342303 - L1MC1 LINE L1 -483 5850 5488 21 0 0 0 chrX 171632263 171632284 -5341856 + AT_rich Low_complexity Low_complexity 1 21 0 1743 75 5 0 chrX 171632287 171632501 -5341639 + AluSg SINE Alu 1 215 -95 2337 67 37 10 chrX 171632700 171632997 -5341143 + AluY SINE Alu 3 307 -4 1797 160 0 29 chrX 171633369 171633675 -5340465 + AluJb SINE Alu 1 297 -15 1691 156 16 35 chrX 171633969 171634284 -5339856 + AluJo SINE Alu 4 312 0 515 205 68 155 chrX 171634451 171634982 -5339158 - MLT1H1 LTR MaLR 0 547 24 187 158 0 26 chrX 171635142 171635180 -5338960 - MER5A DNA MER1_type -115 74 38 * 280 192 0 0 chrX 171635154 171635206 -5338934 + MER5A DNA MER1_type 138 189 0 2106 119 3 20 chrX 171635228 171635531 -5338609 - AluSx SINE Alu -13 299 2 451 230 203 20 chrX 171635693 171635841 -5338299 + MER5A DNA MER1_type 1 175 -14 2192 104 37 0 chrX 171635841 171636139 -5338001 - AluSp SINE Alu -4 309 1 2130 102 6 50 chrX 171636340 171636663 -5337477 + AluSx SINE Alu 1 309 -3 195 308 46 39 chrX 171636674 171636804 -5337336 + MIR3 SINE MIR 58 188 -20 236 306 39 62 chrX 171637267 171637468 -5336672 - MIR SINE MIR -51 211 16 195 355 9 37 chrX 171637589 171637696 -5336444 + MIR SINE MIR 21 124 -84 1273 189 106 0 chrX 171637920 171638195 -5335945 + MER2 DNA MER2_type 42 345 0 2409 81 0 3 chrX 171638242 171638550 -5335590 + AluSg SINE Alu 1 307 -3 206 150 0 25 chrX 171639269 171639309 -5334831 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 334 250 101 12 chrX 171639368 171639536 -5334604 - MER112 DNA MER1_type -7 253 71 1944 95 66 43 chrX 171641618 171641922 -5332218 + AluSq SINE Alu 1 311 -2 205 219 27 0 chrX 171642064 171642137 -5332003 + (TA)n Simple_repeat Simple_repeat 2 76 0 606 219 183 36 chrX 171642525 171642744 -5331396 - Charlie8 DNA MER1_type -2129 288 38 2390 95 0 0 chrX 171644002 171644306 -5329834 - AluSg SINE Alu -6 304 1 490 289 83 10 chrX 171644723 171644927 -5329213 - MIR SINE MIR -31 231 13 228 204 41 0 chrX 171645341 171645390 -5328750 - L2 LINE L2 0 3313 3263 2434 85 0 7 chrX 171645468 171645773 -5328367 - AluSg SINE Alu -7 303 1 209 313 138 0 chrX 171645928 171646008 -5328132 + L2 LINE L2 3154 3244 -28 207 0 0 0 chrX 171646172 171646195 -5327945 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2282 72 3 17 chrX 171646198 171646490 -5327650 - AluSp SINE Alu -25 288 1 2346 102 0 0 chrX 171646912 171647206 -5326934 - AluSx SINE Alu -18 294 1 249 33 0 0 chrX 171647350 171647380 -5326760 + (TAA)n Simple_repeat Simple_repeat 1 30 0 271 303 0 0 chrX 171647617 171647693 -5326447 + (TAG)n Simple_repeat Simple_repeat 1 76 0 234 243 139 69 chrX 171647752 171647896 -5326244 - MIR SINE MIR -105 157 4 2362 97 0 3 chrX 171647959 171648269 -5325871 - AluSc SINE Alu 0 309 1 180 335 115 39 chrX 171648307 171648671 -5325469 + L2 LINE L2 2288 2679 -635 531 150 0 0 chrX 171648858 171648938 -5325202 + AluSg/x SINE Alu 207 286 -23 1154 137 135 46 chrX 171649199 171649511 -5324629 + MER33 DNA MER1_type 1 319 -5 1947 133 40 0 chrX 171649847 171650332 -5323808 - AluSp SINE Alu 0 313 1 447 227 8 17 chrX 171650520 171650639 -5323501 - L2 LINE L2 -7 3306 3189 619 101 47 0 chrX 171651096 171651355 -5322785 + (TA)n Simple_repeat Simple_repeat 1 271 0 2299 77 14 20 chrX 171651357 171651654 -5322486 - AluSq SINE Alu -17 296 2 2062 116 26 17 chrX 171651860 171652162 -5321978 - AluSq SINE Alu -8 305 1 2469 208 79 11 chrX 171653222 171653793 -5320347 + L1ME2 LINE L1 5554 6163 -1 2691 32 0 13 chrX 171654035 171654344 -5319796 + AluY SINE Alu 6 310 -1 1026 301 64 30 chrX 171655332 171656259 -5317881 - L2 LINE L2 0 3313 2354 2379 77 0 7 chrX 171656341 171656638 -5317502 - AluSg SINE Alu -14 296 2 202 157 235 0 chrX 171656964 171657015 -5317125 - L2 LINE L2 -13 3259 3197 2327 112 0 0 chrX 171657860 171658163 -5315977 + AluSg SINE Alu 1 303 -7 2527 68 0 10 chrX 171658163 171658473 -5315667 + AluSq SINE Alu 1 307 -6 328 280 140 13 chrX 171658478 171658635 -5315505 - MIR3 SINE MIR -27 181 5 2261 93 3 50 chrX 171659019 171659342 -5314798 + AluSp SINE Alu 1 308 -5 2582 62 0 0 chrX 171659689 171659994 -5314146 + AluSp SINE Alu 1 305 -8 21 57 0 0 chrX 171660102 171660137 -5314003 + AT_rich Low_complexity Low_complexity 1 35 0 624 251 190 0 chrX 171661226 171661421 -5312719 - MIR SINE MIR -10 252 21 34 0 0 0 chrX 171661820 171661854 -5312286 + AT_rich Low_complexity Low_complexity 1 34 0 812 111 34 0 chrX 171661855 171661972 -5312168 - L1PA16 LINE L1 -21 6145 6025 905 246 67 32 chrX 171662001 171662346 -5311794 + L3 LINE CR1 989 1345 -232 2516 60 0 7 chrX 171662356 171662654 -5311486 - AluY SINE Alu -15 296 1 1526 167 94 11 chrX 171662665 171662952 -5311188 - AluJo SINE Alu -1 311 1 2229 109 0 3 chrX 171662954 171663248 -5310892 - AluSx SINE Alu -19 293 1 261 186 0 51 chrX 171663250 171663309 -5310831 - AluJo SINE Alu -161 141 86 678 213 15 7 chrX 171663309 171663445 -5310695 - AluJo SINE Alu -92 220 84 329 314 83 24 chrX 171663468 171663637 -5310503 + L3 LINE CR1 1389 1567 -10 600 261 17 34 chrX 171663659 171663835 -5310305 + MER5B DNA MER1_type 2 174 -4 213 94 0 0 chrX 171664101 171664133 -5310007 + (CA)n Simple_repeat Simple_repeat 1 32 0 2382 110 0 0 chrX 171664703 171665011 -5309129 + AluSg SINE Alu 2 309 -1 2212 89 15 58 chrX 171665830 171666157 -5307983 - AluSq SINE Alu 0 313 1 1706 139 32 0 chrX 171666378 171666630 -5307510 - AluSx SINE Alu -7 305 46 297 309 114 30 chrX 171667351 171667552 -5306588 - MIR SINE MIR -4 258 41 4084 184 18 0 chrX 171867561 171868296 -5105844 + L1M1 LINE L1 961 1708 -5857 750 103 0 175 chrX 171868302 171868389 -5105751 + L1M1 LINE L1 2384 2410 -5155 2455 124 16 3 chrX 171868389 171868777 -5105363 + L1PB1 LINE L1 5751 6143 -8 750 103 0 175 chrX 171868777 171868912 -5105228 + L1M1 LINE L1 2410 2567 -4998 194 332 195 16 chrX 171869874 171870064 -5104076 - L2 LINE L2 -1358 1956 1733 644 252 20 75 chrX 171870181 171870435 -5103705 + L2 LINE L2 3074 3313 0 27 0 0 0 chrX 171871615 171871642 -5102498 + AT_rich Low_complexity Low_complexity 1 27 0 206 286 11 22 chrX 171872023 171872114 -5102026 + GA-rich Low_complexity Low_complexity 1 90 0 333 0 0 0 chrX 171873150 171873187 -5100953 + (CA)n Simple_repeat Simple_repeat 1 37 0 709 309 88 34 chrX 171874820 171875149 -5098991 + L1MEc LINE L1 1376 1734 -4662 2790 13 0 0 chrX 171875149 171875456 -5098684 - AluY SINE Alu -4 307 1 709 309 88 34 chrX 171875456 171875544 -5098596 + L1MEc LINE L1 1734 1816 -4580 1530 43 0 5 chrX 171875611 171875798 -5098342 + L1PA3 LINE L1 5968 6153 -2 24 32 0 0 chrX 171875798 171875829 -5098311 + AT_rich Low_complexity Low_complexity 1 31 0 201 340 145 49 chrX 171875909 171876700 -5097440 - L2 LINE L2 -463 2851 1985 788 116 6 43 chrX 171876800 171876964 -5097176 + L1 LINE L1 4458 4615 -1531 1285 243 41 0 chrX 171876974 171877316 -5096824 + L1MEc LINE L1 2650 3005 -3210 * 7742 177 12 23 chrX 171877315 171879174 -5094966 + L1M1 LINE L1 3622 5456 -849 2118 128 0 3 chrX 171879174 171879470 -5094670 - AluSx SINE Alu -15 297 3 7742 177 12 23 chrX 171879470 171879716 -5094424 + L1M1 LINE L1 5456 5703 -602 325 96 0 0 chrX 171879724 171879776 -5094364 - L1PA14 LINE L1 -3 6158 6107 1566 107 0 14 chrX 171879876 171880092 -5094048 - AluSp SINE Alu -21 292 80 8221 170 28 17 chrX 171880407 171881966 -5092174 + MSTA-int LTR MaLR 77 1651 0 2366 144 41 19 chrX 171881966 171882382 -5091758 + MSTA LTR MaLR 1 425 -3 3271 165 7 13 chrX 171882971 171883654 -5090486 + L1MA4 LINE L1 4660 5338 -808 2341 134 20 10 chrX 171883757 171884161 -5089979 + L1MA4 LINE L1 5879 6286 -14 22 88 0 0 chrX 171884163 171884220 -5089920 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chrX 171884342 171884364 -5089776 + AT_rich Low_complexity Low_complexity 1 22 0 552 333 35 6 chrX 171884764 171884935 -5089205 + L3 LINE CR1 1389 1564 -13 759 197 48 21 chrX 171886675 171886863 -5087277 - THE1C LTR MaLR -182 193 1 6607 91 0 0 chrX 171886909 171888009 -5086131 - L1PA12 LINE L1 0 6168 5069 359 363 35 6 chrX 171888011 171888182 -5085958 - L1MC/D LINE L1 -2030 5778 5603 838 225 34 11 chrX 171888527 171888705 -5085435 - MER5A DNA MER1_type 0 189 8 239 114 23 0 chrX 171889365 171889409 -5084731 + (TA)n Simple_repeat Simple_repeat 2 46 0 595 347 71 63 chrX 171889549 171890028 -5084112 - L2 LINE L2 -16 3256 2775 223 259 0 17 chrX 171890125 171890183 -5083957 - L2 LINE L2 0 3272 3216 976 264 65 45 chrX 171890290 171890672 -5083468 + MLT1B LTR MaLR 1 390 0 380 302 168 0 chrX 171890724 171890873 -5083267 - L3 LINE CR1 -45 1532 1359 274 337 22 31 chrX 171891397 171891585 -5082555 + MIR SINE MIR 6 191 -65 4019 243 87 19 chrX 171891630 171891982 -5082158 + L1M4 LINE L1 19 346 -6194 375 23 0 0 chrX 171891982 171892026 -5082114 + (CA)n Simple_repeat Simple_repeat 2 45 0 4019 243 87 19 chrX 171892026 171892863 -5081277 + L1M4 LINE L1 346 1289 -5251 3779 214 16 43 chrX 171892903 171894350 -5079790 + L1M4 LINE L1 4692 6101 -467 243 160 40 0 chrX 171894467 171894517 -5079623 + L1M4 LINE L1 6176 6227 -345 * 12895 187 17 33 chrX 171894515 171897216 -5076924 + L1M1 LINE L1 13 2670 -4895 1023 147 78 15 chrX 171897216 171897420 -5076720 - THE1C LTR MaLR 0 375 159 9615 174 34 11 chrX 171897433 171899113 -5075027 + L1P3 LINE L1 10 1727 -4734 233 289 111 0 chrX 171900317 171900407 -5073733 - L2 LINE L2 -11 3261 3162 452 297 231 6 chrX 171900806 171900988 -5073152 + MIR SINE MIR 31 253 -9 997 215 122 4 chrX 171901033 171901279 -5072861 + Charlie1b DNA MER1_type 16 290 -233 5007 93 13 0 chrX 171901283 171901978 -5072162 - L1PA10 LINE L1 -4 6164 5461 2807 96 5 0 chrX 171901978 171902375 -5071765 - L1P LINE L1 -5672 474 76 4617 24 2 0 chrX 171902376 171902913 -5071227 + L1PA4 LINE L1 5614 6151 -4 17650 146 21 14 chrX 171903755 171905711 -5068429 - L1PA10 LINE L1 -662 5469 3529 2792 19 0 0 chrX 171905711 171906022 -5068118 + AluYa5 SINE Alu 1 311 0 17650 146 21 14 chrX 171906022 171906953 -5067187 - L1PA10 LINE L1 -2602 3529 2549 2260 133 28 0 chrX 171906953 171907307 -5066833 - THE1B LTR MaLR 0 364 1 17650 146 21 14 chrX 171907307 171907883 -5066257 - L1PA10 LINE L1 -3582 2549 1979 25024 123 7 7 chrX 171907983 171911986 -5062154 + L1PA8 LINE L1 1379 5380 -766 1949 82 0 25 chrX 171911986 171912262 -5061878 + L1PA8 LINE L1 5897 6169 -3 256 312 81 98 chrX 171912358 171912717 -5061423 + L2 LINE L2 2826 3178 -94 918 158 42 12 chrX 171912858 171913023 -5061117 - THE1C LTR MaLR -205 170 1 6236 178 44 21 chrX 171913023 171914416 -5059724 + L1MA2 LINE L1 2666 4135 -3430 1584 195 13 16 chrX 171914416 171914729 -5059411 - AluJb SINE Alu 0 312 1 6236 178 44 21 chrX 171914729 171915687 -5058453 + L1MA2 LINE L1 4135 5069 -2496 5735 40 1 0 chrX 171915688 171916388 -5057752 + L1PA3 LINE L1 4391 5091 -1055 7207 35 1 0 chrX 171916488 171917348 -5056792 + L1PA3 LINE L1 5287 6147 -8 225 65 0 0 chrX 171917352 171917383 -5056757 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8462 152 10 10 chrX 171917383 171919942 -5054198 + L1MA2 LINE L1 5095 7658 -65 1347 148 0 0 chrX 171919939 171920141 -5053999 - THE1-int LTR MaLR -827 753 552 * 1788 133 61 21 chrX 171920140 171920470 -5053670 + L1MA2 LINE L1 5901 6243 -61 * 5887 116 4 1 chrX 171920468 171921303 -5052837 + THE1C-int LTR MaLR 744 1580 0 2667 95 0 19 chrX 171921307 171921685 -5052455 + THE1C LTR MaLR 5 375 0 5923 235 54 48 chrX 171921689 171922943 -5051197 + L1MD1 LINE L1 2276 3521 -2694 993 243 58 9 chrX 171922943 171923169 -5050971 + MER8 DNA MER2_type 1 237 -2 5923 235 54 48 chrX 171923169 171924385 -5049755 + L1MD1 LINE L1 3521 4723 -1492 1779 186 49 3 chrX 171924385 171924734 -5049406 - MLT1A1 LTR MaLR 0 365 1 5923 235 54 48 chrX 171924734 171924824 -5049316 + L1MD1 LINE L1 4723 4811 -1404 396 287 63 21 chrX 171924943 171925180 -5048960 + MER41B LTR ERV1 184 430 -205 4230 215 31 22 chrX 171925398 171926806 -5047334 + L1MD1 LINE L1 4818 6232 -79 1895 103 67 36 chrX 171926806 171927137 -5047003 - Tigger1 DNA MER2_type 0 2418 2078 225 0 0 0 chrX 171927137 171927162 -5046978 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 920 189 17 0 chrX 171927236 171927416 -5046724 - Tigger1 DNA MER2_type -325 2093 1911 878 244 11 21 chrX 171927811 171928094 -5046046 + AluSx SINE Alu 1 280 -32 207 0 0 0 chrX 171928094 171928117 -5046023 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 12100 132 14 4 chrX 171928117 171929965 -5044175 - Tigger1 DNA MER2_type -529 1889 24 370 97 0 0 chrX 171929991 171930053 -5044087 + L1MD2 LINE L1 6297 6358 -1 355 202 12 12 chrX 171930372 171930456 -5043684 + HsTC2 DNA Tc2 1 84 -1814 885 291 82 48 chrX 171931131 171931839 -5042301 + L1MEd LINE L1 482 1213 -4906 5166 145 37 21 chrX 171931939 171932780 -5041360 - L1M1 LINE L1 -6666 899 46 8850 44 2 2 chrX 171932784 171933840 -5040300 - MER11C LTR ERVK -14 1057 2 194 361 39 31 chrX 171934277 171934407 -5039733 - L2 LINE L2 -221 3051 2921 273 214 10 92 chrX 171936268 171936366 -5037774 + MIR3 SINE MIR 110 199 -9 182 349 35 23 chrX 171936449 171936535 -5037605 - L2 LINE L2 -2894 420 334 676 281 65 5 chrX 171936935 171937134 -5037006 + MIR SINE MIR 2 212 -50 350 270 15 95 chrX 171937281 171937352 -5036788 + MIR SINE MIR 12 69 -193 2084 87 18 0 chrX 171937352 171937669 -5036471 - AluY SINE Alu 0 322 1 350 270 15 95 chrX 171937669 171937733 -5036407 + MIR SINE MIR 69 137 -125 666 280 0 33 chrX 171938980 171939162 -5034978 - MER5A DNA MER1_type -3 186 11 643 264 65 25 chrX 171940269 171940545 -5033595 - L1MC4a LINE L1 -1846 5962 5676 28 0 0 0 chrX 171940701 171940729 -5033411 + AT_rich Low_complexity Low_complexity 1 28 0 394 311 22 15 chrX 171941045 171941180 -5032960 - MLT1I LTR MaLR -75 334 199 426 297 72 18 chrX 171941357 171941579 -5032561 - L1MC4a LINE L1 -548 5622 5389 514 252 55 1 chrX 171941604 171941844 -5032296 - L1MC4a LINE L1 -735 5427 5214 439 391 10 5 chrX 171941873 171942070 -5032070 - L3b LINE CR1 -241 1342 1145 252 372 6 19 chrX 171942611 171942767 -5031373 - L3 LINE CR1 -740 837 684 434 292 0 23 chrX 171943250 171943380 -5030760 + L3 LINE CR1 1345 1471 -106 328 219 64 64 chrX 171943493 171943618 -5030522 - L1ME4a LINE L1 -71 6050 5923 466 84 0 14 chrX 171943618 171943689 -5030451 - L1PA8 LINE L1 -3 6169 6100 328 219 64 64 chrX 171943689 171943782 -5030358 - L1ME4a LINE L1 -197 5924 5832 231 269 115 11 chrX 171943901 171944083 -5030057 - L1MC4 LINE L1 -1 8041 7841 312 181 106 44 chrX 171944160 171944311 -5029829 - L1MA10 LINE L1 -5 6161 6008 1927 155 44 22 chrX 171944626 171944993 -5029147 - THE1C LTR MaLR 0 375 1 9324 134 21 30 chrX 171944993 171946585 -5027555 - THE1C-int LTR MaLR 0 1580 4 4479 228 40 58 chrX 171946714 171948996 -5025144 - L1P3 LINE L1 -4147 2314 1 697 167 17 33 chrX 171949010 171949190 -5024950 + Charlie1 DNA MER1_type 2524 2700 -61 2063 216 73 10 chrX 171949511 171950001 -5024139 - L1ME1 LINE L1 -10 6156 5636 10323 184 22 6 chrX 171950463 171951621 -5022519 - L1PB1 LINE L1 0 6151 5013 2399 68 7 3 chrX 171951621 171951931 -5022209 - AluY SINE Alu 0 311 1 10323 184 22 6 chrX 171951931 171953838 -5020302 - L1PB1 LINE L1 -1138 5013 3037 3787 77 0 0 chrX 171953848 171954342 -5019798 - L1PA7 LINE L1 0 6154 5661 10489 136 6 0 chrX 171954344 171956023 -5018117 + L1PA8A LINE L1 3385 5073 -1073 1126 58 0 0 chrX 171955992 171956131 -5018009 + L1PA5 LINE L1 6000 6138 -16 * 342 0 0 0 chrX 171956131 171956169 -5017971 + (TA)n Simple_repeat Simple_repeat 1 38 0 4524 79 8 0 chrX 171956173 171956783 -5017357 + L1PA8A LINE L1 5318 5932 -199 1942 211 38 43 chrX 171956753 171957361 -5016779 + L1MA7 LINE L1 2949 3553 -2593 * 5297 145 15 63 chrX 171957360 171957530 -5016610 + L1MA7 LINE L1 5163 5340 -951 3610 108 11 2 chrX 171957530 171958068 -5016072 + L1PA13 LINE L1 5616 6159 -4 5297 145 15 63 chrX 171958068 171959052 -5015088 + L1MA7 LINE L1 5340 6291 0 251 217 19 85 chrX 171959102 171959208 -5014932 + L1ME4a LINE L1 4456 4554 -1592 876 274 116 11 chrX 171959208 171959562 -5014578 + L2 LINE L2 1979 2369 -945 624 279 68 90 chrX 171959565 171959920 -5014220 + L2 LINE L2 2952 3298 -15 2402 194 59 10 chrX 171959923 171960434 -5013706 - MER44D DNA MER2_type 0 605 15 367 333 33 58 chrX 171960478 171960838 -5013302 + L1ME4a LINE L1 4582 4932 -1214 1278 287 101 15 chrX 171960944 171961549 -5012591 - L1MC4a LINE L1 -361 5803 5260 1070 186 79 0 chrX 171961915 171962130 -5012010 + MER46A DNA MER2_type 5 236 0 266 125 21 0 chrX 171962130 171962178 -5011962 + L1MC4 LINE L1 7993 8041 -1 1016 291 54 47 chrX 171962390 171962947 -5011193 + L1ME4a LINE L1 5258 5818 -303 746 227 45 0 chrX 171963044 171963220 -5010920 - L1MB4 LINE L1 -184 5996 5813 3797 94 11 2 chrX 171963397 171963940 -5010200 - L1PA13 LINE L1 0 6163 5616 655 103 22 59 chrX 171963967 171964103 -5010037 + L1MB4 LINE L1 6044 6174 -6 307 253 148 30 chrX 171964108 171964310 -5009830 + L1ME4a LINE L1 5884 6109 -12 203 244 0 0 chrX 171964831 171964872 -5009268 - L2 LINE L2 -67 3246 3206 * 269 315 27 60 chrX 171964865 171965014 -5009126 - L2 LINE L2 -229 3043 2900 532 296 46 135 chrX 171966274 171966883 -5007257 + MLT1K LTR MaLR 34 588 0 295 286 0 0 chrX 171967273 171967336 -5006804 + MIR SINE MIR 12 74 -188 756 247 35 0 chrX 171967444 171967618 -5006522 + MIR SINE MIR 82 261 -1 522 284 28 57 chrX 171967651 171967862 -5006278 + MIR3 SINE MIR 1 205 -3 353 295 149 0 chrX 171967895 171968032 -5006108 - MIR SINE MIR -50 212 49 5243 127 14 5 chrX 171968958 171969820 -5004320 - L1MA4A LINE L1 -8 6295 5426 21 0 0 0 chrX 171970778 171970799 -5003341 + AT_rich Low_complexity Low_complexity 1 21 0 4787 201 28 37 chrX 171972017 171973283 -5000857 - L1MD1 LINE L1 0 6636 5397 590 186 10 0 chrX 171973283 171973385 -5000755 - U6 snRNA snRNA -2 105 3 4787 201 28 37 chrX 171973385 171973881 -5000259 - L1MD1 LINE L1 -1239 5397 4898 1275 247 65 33 chrX 171973892 171974435 -4999705 - L1MD1 LINE L1 -4698 1842 1283 29942 121 15 62 chrX 171974487 171980496 -4993644 + L1P3 LINE L1 12 5730 -424 3071 156 63 10 chrX 171980983 171981051 -4993089 - L1MA7 LINE L1 -278 6022 5959 1401 132 36 0 chrX 171981051 171981302 -4992838 - L1MA8 LINE L1 -1 6290 6031 3071 156 63 10 chrX 171981302 171981891 -4992249 - L1MA7 LINE L1 -341 5959 5296 * 5301 106 11 33 chrX 171981886 171982737 -4991403 - L1PB1 LINE L1 0 6151 5320 675 155 12 84 chrX 171982745 171982887 -4991253 - MLT1A2 LTR MaLR -55 341 185 3203 129 2 0 chrX 171982892 171983390 -4990750 - L1PA8A LINE L1 0 6147 5693 13206 202 36 13 chrX 171983398 171987451 -4986689 - L1PBa LINE L1 -819 6043 1898 2999 54 0 0 chrX 171987458 171987831 -4986309 - L1PA5 LINE L1 -5 6149 5777 231 36 0 0 chrX 171987831 171987859 -4986281 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2666 77 31 19 chrX 171987859 171988263 -4985877 - LTR7 LTR ERV1 -43 407 1 2380 96 50 13 chrX 171988263 171988639 -4985501 - HERVH LTR ERV1 0 7713 7324 1291 146 0 0 chrX 171988633 171988832 -4985308 - HERVH LTR ERV1 -1889 5824 5626 * 38358 63 43 1 chrX 171988833 171994370 -4979770 - L1P2 LINE L1 -369 5785 11 10147 166 34 25 chrX 171994379 171996271 -4977869 - L1PBa LINE L1 -4948 1915 6 7975 231 106 33 chrX 171996269 171997263 -4976877 - L1M4 LINE L1 -812 6294 5374 * 1346 138 5 0 chrX 171997263 171997480 -4976660 - L1PB1 LINE L1 0 6151 5934 7975 231 106 33 chrX 171997480 172000452 -4973688 - L1M4 LINE L1 -1732 5374 2621 2692 105 3 0 chrX 172000452 172000815 -4973325 - THE1B LTR MaLR 0 364 1 9882 113 53 12 chrX 172000815 172002334 -4971806 - THE1B-int LTR MaLR 0 1580 1 2558 122 0 0 chrX 172002336 172002698 -4971442 - THE1B LTR MaLR -2 362 1 7975 231 106 33 chrX 172002698 172004832 -4969308 - L1M4 LINE L1 -4485 2621 10 267 163 0 0 chrX 172005968 172006017 -4968123 - MLT2B2 LTR ERVL -5 515 467 234 192 0 0 chrX 172006020 172006072 -4968068 + (TA)n Simple_repeat Simple_repeat 1 52 0 * 243 0 0 0 chrX 172006071 172006098 -4968042 + (GA)n Simple_repeat Simple_repeat 2 28 0 2150 204 9 16 chrX 172006098 172006538 -4967602 - MLT2B2 LTR ERVL -39 476 40 283 254 0 0 chrX 172006566 172006633 -4967507 - MIR SINE MIR 0 262 196 284 203 39 39 chrX 172006742 172006895 -4967245 + (TATAA)n Simple_repeat Simple_repeat 1 153 0 26 50 0 0 chrX 172006987 172007027 -4967113 + AT_rich Low_complexity Low_complexity 1 40 0 811 230 57 73 chrX 172007027 172007275 -4966865 + MLT2B1 LTR ERVL 275 518 -2 810 279 86 31 chrX 172007275 172007859 -4966281 + L1ME4a LINE L1 5391 6006 -115 9261 202 35 12 chrX 172007957 172011078 -4963062 - L1MA9 LINE L1 -40 6272 3082 711 232 13 13 chrX 172011155 172011306 -4962834 + FRAM SINE Alu 1 151 -25 669 200 7 7 chrX 172011316 172011471 -4962669 - L1MA10 LINE L1 -11 6323 6169 372 243 113 28 chrX 172011482 172011659 -4962481 - L1ME1 LINE L1 -165 6395 6204 5261 164 29 10 chrX 172011661 172012188 -4961952 + L1MA8 LINE L1 4958 5474 -817 2059 182 71 0 chrX 172012188 172012583 -4961557 - MSTA LTR MaLR -1 427 5 5261 164 29 10 chrX 172012583 172013366 -4960774 + L1MA8 LINE L1 5474 6288 -3 5272 194 54 19 chrX 172013376 172014691 -4959449 - L1ME1 LINE L1 -1060 5480 4213 1999 173 32 88 chrX 172014691 172015224 -4958916 + MLT1D LTR MaLR 3 505 0 5272 194 54 19 chrX 172015224 172017238 -4956902 - L1ME1 LINE L1 -2327 4213 1927 1076 284 71 34 chrX 172017238 172018068 -4956072 - L1ME LINE L1 -3940 2456 1596 1769 148 47 27 chrX 172018083 172018448 -4955692 - L1MA9 LINE L1 -159 6153 5782 210 171 0 0 chrX 172018448 172018489 -4955651 + (TATG)n Simple_repeat Simple_repeat 2 42 0 241 162 81 54 chrX 172018513 172018587 -4955553 - L1MC4 LINE L1 -1339 6703 6628 * 828 142 14 14 chrX 172018555 172018703 -4955437 - L1MA9 LINE L1 -526 5786 5639 1646 168 55 33 chrX 172018705 172019068 -4955072 + THE1C LTR MaLR 3 373 -2 5973 132 4 54 chrX 172019072 172020106 -4954034 + THE1C-int LTR MaLR 3 984 -596 652 274 101 36 chrX 172020095 172020684 -4953456 - L1ME LINE L1 -5041 1164 693 * 425 313 62 10 chrX 172021017 172021209 -4952931 - L1ME LINE L1 -6140 256 55 1884 144 0 54 chrX 172021252 172021565 -4952575 - AluSg SINE Alu -14 296 1 22 35 0 0 chrX 172021795 172021824 -4952316 + AT_rich Low_complexity Low_complexity 1 29 0 230 329 58 31 chrX 172022624 172022849 -4951291 + L2 LINE L2 2071 2301 -1013 13188 75 3 7 chrX 172023206 172024911 -4949229 + HERVL-A1 LTR ERVL 646 2343 -3311 * 17898 70 2 14 chrX 172024908 172027216 -4946924 + HERVL-A1 LTR ERVL 3374 5654 0 2958 86 58 2 chrX 172027218 172027635 -4946505 + MLT2A1 LTR ERVL 3 442 -2 2030 136 46 0 chrX 172027640 172027986 -4946154 + L1P LINE L1 4730 5091 -1055 329 155 0 0 chrX 172227986 172228044 -4746096 - MLT2B3 LTR ERVL -496 58 1 3470 202 66 16 chrX 172229169 172230211 -4743929 + L1MA7 LINE L1 5011 6095 -196 346 222 91 51 chrX 172230388 172230560 -4743580 - MIR SINE MIR -62 146 19 2116 136 0 0 chrX 172230587 172230896 -4743244 - AluSx SINE Alu 0 312 4 307 349 71 0 chrX 172231295 172231421 -4742719 - MIR3 SINE MIR -25 183 49 903 217 4 71 chrX 172231534 172231774 -4742366 - MER58A DNA MER1_type 0 224 1 347 357 65 22 chrX 172231827 172232012 -4742128 + L2 LINE L2 3079 3271 -1 269 227 91 11 chrX 172233088 172233176 -4740964 + L2 LINE L2 2916 3010 -262 201 276 92 40 chrX 172233154 172233230 -4740910 + L2 LINE L2 2722 2801 -513 * 402 257 20 10 chrX 172233247 172233348 -4740792 + MER94 DNA DNA 19 120 -14 504 308 86 4 chrX 172233358 172233592 -4740548 + L2 LINE L2 2809 3061 -252 411 282 70 36 chrX 172234221 172234522 -4739618 - L1ME LINE L1 -544 5626 5316 571 367 33 20 chrX 172234874 172235474 -4738666 + L1MEc LINE L1 112 719 -5677 650 296 41 75 chrX 172235578 172235923 -4738217 + MLT1H LTR MaLR 126 458 -91 184 359 0 0 chrX 172236519 172236597 -4737543 - MIR SINE MIR -73 135 58 258 56 0 0 chrX 172238101 172238137 -4736003 + (CA)n Simple_repeat Simple_repeat 1 36 0 2070 232 52 21 chrX 172238356 172238986 -4735154 + L1ME1 LINE L1 5318 5967 -199 3318 187 12 0 chrX 172239006 172239599 -4734541 + Charlie3 DNA MER1_type 2 601 -2109 14247 183 22 18 chrX 172239704 172244135 -4730005 + L1MA4A LINE L1 119 4583 -2422 1309 181 56 38 chrX 172244135 172244251 -4729889 + AluJb SINE Alu 3 115 -197 244 0 56 0 chrX 172244251 172244287 -4729853 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1309 181 56 38 chrX 172244287 172244458 -4729682 + AluJb SINE Alu 115 295 -17 14247 183 22 18 chrX 172244458 172246889 -4727251 + L1MA4A LINE L1 4583 7004 -1 295 338 95 7 chrX 172247561 172247709 -4726431 + L2 LINE L2 2820 2980 -333 293 265 59 0 chrX 172247738 172247806 -4726334 + MIR SINE MIR 1 72 -190 21 36 0 0 chrX 172247954 172247982 -4726158 + AT_rich Low_complexity Low_complexity 1 28 0 13901 190 23 9 chrX 172248092 172251651 -4722489 - L1MA4 LINE L1 -4 6478 2856 1864 179 0 0 chrX 172251651 172251952 -4722188 + AluJb SINE Alu 1 301 -11 13901 190 23 9 chrX 172251952 172252347 -4721793 - L1MA4 LINE L1 -3626 2856 2468 195 162 0 0 chrX 172252442 172252479 -4721661 + A-rich Low_complexity Low_complexity 4 40 0 23 0 0 0 chrX 172253094 172253117 -4721023 + GC_rich Low_complexity Low_complexity 1 23 0 6429 190 62 40 chrX 172253205 172255680 -4718460 - L1MA4 LINE L1 -3847 2481 4 1111 171 46 37 chrX 172256888 172257105 -4717035 + MER20 DNA MER1_type 1 219 0 189 107 0 0 chrX 172257826 172257854 -4716286 + (TG)n Simple_repeat Simple_repeat 1 28 0 3605 129 7 2 chrX 172258723 172259287 -4714853 - L1PA16 LINE L1 0 6166 5600 1475 174 11 14 chrX 172259622 172259903 -4714237 - L1MA9 LINE L1 -440 5872 5593 239 259 0 0 chrX 172259945 172260003 -4714137 - MLT1E2 LTR MaLR 0 626 569 785 150 0 29 chrX 172260003 172260143 -4713997 - L1MA9 LINE L1 -701 5611 5476 989 249 51 42 chrX 172260147 172260480 -4713660 + L1MA9 LINE L1 5939 6274 -38 564 183 10 0 chrX 172260654 172260758 -4713382 + FLAM_A SINE Alu 28 132 -10 217 331 55 31 chrX 172261220 172261347 -4712793 + L2 LINE L2 3143 3272 0 245 263 0 0 chrX 172261518 172261596 -4712544 + MIR SINE MIR 58 135 -73 1105 280 39 62 chrX 172262192 172262656 -4711484 - MLT1H LTR MaLR -91 458 6 455 151 0 0 chrX 172262804 172262890 -4711250 - L1M3 LINE L1 -731 5437 5352 22 80 0 0 chrX 172263060 172263110 -4711030 + AT_rich Low_complexity Low_complexity 1 50 0 386 212 0 0 chrX 172263154 172263239 -4710901 - L1M3 LINE L1 -732 5436 5352 264 272 0 25 chrX 172263233 172263314 -4710826 - L1M3e LINE L1 -5408 1622 1544 * 3008 222 42 30 chrX 172263325 172263463 -4710677 - L1ME1 LINE L1 -50 6116 5981 18971 102 14 11 chrX 172263463 172265284 -4708856 - Charlie3 DNA MER1_type 0 2706 872 2203 86 20 30 chrX 172265284 172265586 -4708554 - AluSx SINE Alu -13 299 1 18971 102 14 11 chrX 172265586 172266460 -4707680 - Charlie3 DNA MER1_type -1834 872 2 3008 222 42 30 chrX 172266460 172267265 -4706875 - L1MA7 LINE L1 -185 5981 5164 1593 170 55 30 chrX 172267262 172267591 -4706549 + L1MA7 LINE L1 5955 6291 0 * 684 210 105 24 chrX 172267598 172267846 -4706294 - L1ME1 LINE L1 -973 5173 4906 447 90 34 34 chrX 172267870 172267959 -4706181 - L1MA4 LINE L1 -1 6299 6211 980 86 26 0 chrX 172267998 172268149 -4705991 + L1M LINE L1 5263 5417 -883 330 263 51 15 chrX 172268157 172268294 -4705846 - L1MC5 LINE L1 -516 7445 7304 1559 245 25 59 chrX 172268419 172268717 -4705423 - L1MC4 LINE L1 -733 7228 6986 2032 104 7 31 chrX 172268717 172269041 -4705099 - AluSx SINE Alu 0 317 1 1559 245 25 59 chrX 172269041 172269326 -4704814 - L1MC4 LINE L1 -975 6986 6693 25 0 0 0 chrX 172271328 172271353 -4702787 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chrX 172271466 172271503 -4702637 + AT_rich Low_complexity Low_complexity 1 37 0 240 302 16 0 chrX 172271769 172271832 -4702308 - L2 LINE L2 -6 3307 3244 310 353 43 24 chrX 172271875 172272082 -4702058 - MIR SINE MIR -19 243 33 233 374 71 16 chrX 172272098 172272280 -4701860 - L2 LINE L2 -247 3025 2834 1704 200 96 38 chrX 172272325 172272824 -4701316 - L1ME1 LINE L1 -4 6162 5635 4151 288 77 27 chrX 172272828 172275096 -4699044 - L1MEc LINE L1 -3980 2416 36 1180 257 67 97 chrX 172275348 172276195 -4697945 + L1ME3 LINE L1 5293 6114 -48 1459 177 31 40 chrX 172276274 172276601 -4697539 - MER33 DNA MER1_type 0 324 1 370 311 33 0 chrX 172276905 172277027 -4697113 + MIR SINE MIR 124 249 -13 237 313 12 12 chrX 172277025 172277105 -4697035 - L2 LINE L2 -4 3309 3230 * 973 105 8 0 chrX 172277678 172277811 -4696329 - AluSq SINE Alu -16 297 164 540 108 0 0 chrX 172277811 172277885 -4696255 - AluSq SINE Alu -238 74 1 2495 212 50 5 chrX 172277887 172278463 -4695677 - L1ME2 LINE L1 -13 6151 5550 203 156 0 0 chrX 172278576 172278608 -4695532 + (TG)n Simple_repeat Simple_repeat 1 32 0 476 304 114 14 chrX 172278622 172278979 -4695161 - MLT2E LTR ERVL -71 557 109 359 310 99 46 chrX 172279234 172279579 -4694561 - L1ME2 LINE L1 -748 5398 5036 242 351 140 18 chrX 172279654 172279768 -4694372 - L2 LINE L2 -1 3271 3144 877 154 22 41 chrX 172279898 172280124 -4694016 - L1MA8 LINE L1 -1 6290 6081 1180 237 77 16 chrX 172281147 172281459 -4692681 - MLT1H LTR MaLR 0 549 219 270 56 0 0 chrX 172281716 172281752 -4692388 + (CA)n Simple_repeat Simple_repeat 2 37 0 188 346 73 59 chrX 172282749 172282885 -4691255 - MIR SINE MIR -105 157 20 585 278 104 13 chrX 172283107 172283337 -4690803 - MER5C DNA MER1_type -47 277 27 265 284 95 0 chrX 172283467 172283583 -4690557 + L1MC4a LINE L1 5920 6046 -1762 545 235 32 21 chrX 172283583 172283770 -4690370 + L1MC4 LINE L1 7702 7890 -152 279 277 0 50 chrX 172283777 172283878 -4690262 + L1MC4 LINE L1 7943 8038 -4 1983 149 0 7 chrX 172284816 172285124 -4689016 - AluJb SINE Alu -6 306 1 799 225 16 0 chrX 172288040 172288222 -4685918 + MIR SINE MIR 8 192 -70 1267 216 153 3 chrX 172289776 172290109 -4684031 - MLT1B LTR MaLR -3 387 5 737 256 10 5 chrX 172290635 172290676 -4683464 - MER3 DNA MER1_type 0 209 170 1836 167 39 6 chrX 172290676 172291012 -4683128 + MER7A DNA MER2_type 1 345 -1 737 256 10 5 chrX 172291012 172291169 -4682971 - MER3 DNA MER1_type -39 170 10 207 304 29 14 chrX 172291487 172291556 -4682584 + L2 LINE L2 3142 3211 -61 442 258 31 93 chrX 172291594 172291819 -4682321 - MIR SINE MIR -51 211 1 300 349 76 0 chrX 172292142 172292274 -4681866 - L2 LINE L2 -7 3265 3124 340 291 40 112 chrX 172292486 172292764 -4681376 + MIR SINE MIR 5 262 0 194 331 167 23 chrX 172293254 172293450 -4680690 + L2 LINE L2 2175 2420 -894 1160 165 0 76 chrX 172293450 172293687 -4680453 + MER20 DNA MER1_type 1 219 0 194 331 167 23 chrX 172293687 172293753 -4680387 + L2 LINE L2 2420 2475 -839 278 349 11 58 chrX 172294122 172294311 -4679829 + L2 LINE L2 2914 3093 -179 189 0 0 0 chrX 172294325 172294346 -4679794 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 764 180 0 0 chrX 172294346 172294468 -4679672 - FRAM SINE Alu -32 144 23 206 300 160 20 chrX 172294496 172294596 -4679544 + L2 LINE L2 3150 3263 -9 225 253 44 44 chrX 172294662 172294753 -4679387 - LTR33 LTR ERVL -8 513 423 203 0 37 0 chrX 172294874 172294901 -4679239 + (GA)n Simple_repeat Simple_repeat 1 28 0 621 245 19 13 chrX 172294925 172295084 -4679056 - LTR33 LTR ERVL -361 160 1 288 366 108 14 chrX 172295084 172295297 -4678843 + MIR SINE MIR 6 238 -24 267 264 215 0 chrX 172297034 172297155 -4676985 - MIR SINE MIR -14 248 102 6717 97 23 9 chrX 172297176 172298165 -4675975 - L1MA1 LINE L1 0 6302 5300 20096 159 45 21 chrX 172298168 172300971 -4673169 - L1 LINE L1 -2681 4884 2149 2351 92 0 0 chrX 172300971 172301263 -4672877 + AluSx SINE Alu 1 292 -20 20096 159 45 21 chrX 172301263 172301867 -4672273 - L1 LINE L1 -5416 2149 1561 1204 43 12 12 chrX 172301867 172302029 -4672111 - L1PA13 LINE L1 0 6163 6002 20096 159 45 21 chrX 172302029 172303378 -4670762 - L1 LINE L1 -6004 1561 16 1777 260 93 10 chrX 172303385 172303881 -4670259 + L2 LINE L2 2284 2820 -494 403 258 57 16 chrX 172303864 172303988 -4670152 + L2 LINE L2 3185 3313 0 * 460 298 102 19 chrX 172304499 172304704 -4669436 - L3b LINE CR1 -254 1329 1108 450 203 152 7 chrX 172306132 172306270 -4667870 + MER3 DNA MER1_type 1 158 -51 25 51 0 0 chrX 172306285 172306324 -4667816 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chrX 172306465 172306486 -4667654 + AT_rich Low_complexity Low_complexity 1 21 0 1741 167 6 32 chrX 172306757 172307068 -4667072 - AluJb SINE Alu -9 303 1 1824 122 87 32 chrX 172307105 172307450 -4666690 - THE1B LTR MaLR 0 364 1 1355 265 157 9 chrX 172307661 172308102 -4666038 - MLT1G1 LTR MaLR -9 586 81 314 189 244 11 chrX 172308322 172308412 -4665728 - MER5A DNA MER1_type 0 189 79 805 204 35 6 chrX 172308440 172308612 -4665528 - L1PA16 LINE L1 -9 6157 5981 1131 160 1 5 chrX 172308712 172308932 -4665208 - L1PA16 LINE L1 -384 5772 5559 268 284 102 0 chrX 172309243 172309331 -4664809 + MER91C DNA MER1_type 14 110 -30 23 24 0 24 chrX 172309831 172309855 -4664285 + AT_rich Low_complexity Low_complexity 1 25 -15 2170 27 0 4 chrX 172309855 172310114 -4664026 - L1PA3 LINE L1 0 6155 5898 23 24 0 24 chrX 172310114 172310130 -4664010 + AT_rich Low_complexity Low_complexity 25 40 0 1537 266 68 34 chrX 172310492 172311023 -4663117 - MLT1H LTR MaLR 0 549 1 367 356 63 11 chrX 172311280 172311454 -4662686 + L2 LINE L2 3131 3313 0 1446 165 150 9 chrX 172311550 172311877 -4662263 + THE1C LTR MaLR 3 375 0 10746 108 1 42 chrX 172311877 172313524 -4660616 + THE1C-int LTR MaLR 1 1580 0 1595 167 52 75 chrX 172313524 172313908 -4660232 + THE1C LTR MaLR 1 375 0 1531 217 28 14 chrX 172316118 172316478 -4657662 + MLT1A1 LTR MaLR 1 365 0 444 269 8 15 chrX 172316926 172317060 -4657080 + MER94 DNA DNA 2 134 0 327 349 93 47 chrX 172317060 172317616 -4656524 + L2 LINE L2 2280 2861 -453 1001 180 64 9 chrX 172317848 172318081 -4656059 - L1ME2 LINE L1 0 6164 5919 344 323 39 46 chrX 172318663 172318793 -4655347 + L2 LINE L2 3184 3312 -1 331 344 0 41 chrX 172319653 172319775 -4654365 + MIR3 SINE MIR 78 194 -14 295 286 40 32 chrX 172323067 172323193 -4650947 + MER5A DNA MER1_type 2 139 -50 350 230 157 47 chrX 172323287 172323467 -4650673 + MIR SINE MIR 1 262 0 508 252 170 7 chrX 172323736 172323883 -4650257 - MER5A DNA MER1_type -6 183 13 529 328 100 12 chrX 172325202 172325461 -4648679 - MLT1H LTR MaLR -200 349 68 494 161 21 0 chrX 172325591 172325684 -4648456 - MER53 DNA DNA -2 187 93 268 155 26 112 chrX 172325724 172325840 -4648300 - MER53 DNA DNA -83 106 1 1508 201 16 57 chrX 172326389 172326757 -4647383 - MLT1E3 LTR MaLR -6 618 266 180 0 0 0 chrX 172326817 172326837 -4647303 + (TTG)n Simple_repeat Simple_repeat 2 21 0 758 253 0 6 chrX 172326841 172327003 -4647137 - AluJo SINE Alu -30 282 122 485 212 44 9 chrX 172327015 172327128 -4647012 - MLT1E3 LTR MaLR -506 118 2 2126 125 0 7 chrX 172327128 172327431 -4646709 + AluSx SINE Alu 1 301 -11 2280 112 0 0 chrX 172327575 172327887 -4646253 - AluSx SINE Alu 0 312 1 22 0 0 0 chrX 172328086 172328108 -4646032 + AT_rich Low_complexity Low_complexity 1 22 0 1952 86 36 13 chrX 172328349 172328653 -4645487 - L1MA2 LINE L1 0 6304 5994 381 239 0 0 chrX 172329641 172329708 -4644432 + L2 LINE L2 3235 3301 -12 704 252 89 5 chrX 172329710 172329924 -4644216 - MIR SINE MIR -12 250 19 185 376 51 25 chrX 172329914 172330071 -4644069 - MIR SINE MIR -101 161 1 * 2784 177 7 18 chrX 172330105 172330665 -4643475 - L1MB2 LINE L1 0 6171 5618 1595 146 42 3 chrX 172331572 172331859 -4642281 - L1MA3 LINE L1 0 6305 6008 16303 165 24 11 chrX 172331867 172333151 -4640989 - L1M1 LINE L1 -4741 2824 1558 1979 140 56 8 chrX 172333151 172333509 -4640631 + THE1C LTR MaLR 1 375 0 16303 165 24 11 chrX 172333509 172334857 -4639283 - L1M1 LINE L1 -6007 1558 153 2185 118 0 3 chrX 172334857 172335163 -4638977 + AluSx SINE Alu 1 305 -7 16303 165 24 11 chrX 172335163 172335308 -4638832 - L1M1 LINE L1 -7412 153 11 21 57 0 0 chrX 172335776 172335811 -4638329 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chrX 172335877 172335919 -4638221 + AT_rich Low_complexity Low_complexity 1 42 0 448 279 56 20 chrX 172336061 172336312 -4637828 - L1MC4 LINE L1 -144 7898 7639 1992 119 6 19 chrX 172336333 172336652 -4637488 + L1PA13 LINE L1 5833 6147 -16 530 45 0 0 chrX 172336652 172336718 -4637422 - AluSp/q SINE Alu -18 295 230 2143 92 0 0 chrX 172336718 172336989 -4637151 - AluSx SINE Alu -41 271 1 795 294 98 33 chrX 172337079 172337528 -4636612 - LTR33 LTR ERVL -7 514 37 434 279 126 66 chrX 172337580 172337913 -4636227 - L1M4 LINE L1 -2848 3298 2946 2271 109 0 0 chrX 172338053 172338355 -4635785 + AluSx SINE Alu 11 312 0 422 306 17 35 chrX 172338845 172339018 -4635122 + MIR SINE MIR 64 233 -29 229 280 22 174 chrX 172339395 172339670 -4634470 + MIR SINE MIR 20 252 -10 3136 27 3 0 chrX 172341954 172342326 -4631814 + L1PA4 LINE L1 5783 6155 0 516 329 95 42 chrX 172342637 172343309 -4630831 - L2 LINE L2 -1 3312 2596 199 288 121 15 chrX 172343300 172343366 -4630774 - MIR SINE MIR -94 114 42 * 575 282 32 91 chrX 172343409 172343661 -4630479 - MIR SINE MIR 0 262 26 729 286 53 57 chrX 172343699 172343961 -4630179 + MIR SINE MIR 2 262 0 199 389 63 8 chrX 172344835 172344961 -4629179 - MIR SINE MIR -55 153 21 668 273 34 0 chrX 172345082 172345258 -4628882 - MIR SINE MIR -10 252 71 210 147 0 0 chrX 172345373 172345407 -4628733 + (CA)n Simple_repeat Simple_repeat 1 34 0 296 266 9 28 chrX 172345546 172345655 -4628485 + CT-rich Low_complexity Low_complexity 4 110 0 2191 99 3 13 chrX 172347045 172347216 -4626924 - AluSg SINE Alu -11 299 128 270 0 0 0 chrX 172347216 172347246 -4626894 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2101 106 0 3 chrX 172347246 172347528 -4626612 - AluY SINE Alu -28 283 3 2191 99 3 13 chrX 172347528 172347657 -4626483 - AluSg SINE Alu -180 130 1 270 184 67 0 chrX 172347760 172348158 -4625982 + (TA)n Simple_repeat Simple_repeat 1 424 0 426 165 21 31 chrX 172348171 172348268 -4625872 + L1MA10 LINE L1 6236 6331 -3 27 29 0 0 chrX 172348288 172348322 -4625818 + AT_rich Low_complexity Low_complexity 1 34 0 476 88 75 6 chrX 172348331 172348490 -4625650 + (TA)n Simple_repeat Simple_repeat 1 170 0 242 281 55 16 chrX 172348774 172348902 -4625238 + L1ME LINE L1 5677 5809 -312 2281 147 36 54 chrX 172349024 172349466 -4624674 - MER57B LTR ERV1 0 434 1 1523 105 230 198 chrX 172349466 172350067 -4624073 - MER57B-int LTR ERV1 0 7537 6918 2603 108 55 0 chrX 172350119 172350499 -4623641 - MER57B-int LTR ERV1 -597 6940 6540 * 3319 89 40 2 chrX 172350495 172350945 -4623195 - MER57B-int LTR ERV1 -7070 467 1 2806 137 7 0 chrX 172350949 172351371 -4622769 - MER57B LTR ERV1 -9 425 1 252 209 75 0 chrX 172351769 172351836 -4622304 + MIR SINE MIR 97 168 -94 1847 181 151 3 chrX 172352000 172352364 -4621776 + MER47B DNA MER2_type 1 418 0 408 378 111 14 chrX 172352378 172352801 -4621339 + L2 LINE L2 2298 2761 -553 409 249 65 43 chrX 172352864 172353049 -4621091 - MER112 DNA MER1_type -7 253 65 191 357 54 18 chrX 172353240 172353352 -4620788 + L2 LINE L2 2945 3060 -212 206 341 24 0 chrX 172353525 172353607 -4620533 + MIR3 SINE MIR 125 208 0 1744 104 0 0 chrX 172354710 172354932 -4619208 + AluSx SINE Alu 64 285 -27 220 171 0 0 chrX 172354946 172354981 -4619159 - L2 LINE L2 -92 3221 3187 30 45 0 0 chrX 172355201 172355245 -4618895 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chrX 172355539 172355571 -4618569 + AT_rich Low_complexity Low_complexity 1 32 0 2106 109 0 10 chrX 172355571 172355865 -4618275 + AluSq SINE Alu 1 291 -22 276 353 215 13 chrX 172355865 172356177 -4617963 - L3 LINE CR1 -149 1428 1054 566 247 114 34 chrX 172357412 172357736 -4616404 - HAL1b LINE L1 -133 1215 866 22 0 0 0 chrX 172357983 172358005 -4616135 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chrX 172358230 172358251 -4615889 + AT_rich Low_complexity Low_complexity 1 21 0 266 210 34 17 chrX 172358390 172358509 -4615631 + (TATATG)n Simple_repeat Simple_repeat 3 123 0 879 256 97 14 chrX 172358510 172358881 -4615259 - HAL1b LINE L1 -598 750 349 333 295 0 11 chrX 172359369 172359464 -4614676 + L1MC4 LINE L1 6610 6703 -1339 267 210 0 0 chrX 172359465 172359519 -4614621 + (TA)n Simple_repeat Simple_repeat 1 57 -5 2416 98 138 0 chrX 172359519 172359895 -4614245 - MSTA LTR MaLR 0 428 1 267 210 0 0 chrX 172359895 172359902 -4614238 + (TA)n Simple_repeat Simple_repeat 56 62 0 1999 128 0 10 chrX 172359902 172360207 -4613933 + MER4D LTR ERV1 1 302 -601 2195 105 3 0 chrX 172360207 172360533 -4613607 + AluSq SINE Alu 1 327 0 4478 118 17 18 chrX 172360534 172361243 -4612897 + MER4D LTR ERV1 196 903 0 498 307 84 36 chrX 172361260 172361511 -4612629 + L1MEc LINE L1 137 399 -5997 885 222 140 0 chrX 172361659 172361866 -4612274 + MLT1G1 LTR MaLR 360 595 0 855 236 29 14 chrX 172362654 172362862 -4611278 - MER20 DNA MER1_type -8 211 1 324 309 98 31 chrX 172363383 172363742 -4610398 + L1ME4a LINE L1 5357 5739 -382 5553 61 1 3 chrX 172364072 172364776 -4609364 - L1PA7 LINE L1 0 6154 5452 357 286 30 38 chrX 172365028 172365161 -4608979 + L1ME4a LINE L1 5780 5911 -210 577 193 37 0 chrX 172365189 172365298 -4608842 + FLAM_A SINE Alu 8 120 -22 264 30 0 0 chrX 172365311 172365344 -4608796 + (CA)n Simple_repeat Simple_repeat 2 34 0 2137 118 0 37 chrX 172365837 172366159 -4607981 + AluSx SINE Alu 3 312 0 596 191 95 0 chrX 172366740 172366866 -4607274 + MER5A DNA MER1_type 1 138 -51 414 361 48 0 chrX 172367549 172367757 -4606383 - MIR SINE MIR -27 235 18 328 200 0 15 chrX 172368038 172368103 -4606037 - MER5B DNA MER1_type -110 68 5 3412 146 30 32 chrX 172369480 172370056 -4604084 + L1MB7 LINE L1 5518 6094 -90 1430 194 0 0 chrX 172370056 172370293 -4603847 - MER8 DNA MER2_type 0 239 3 3412 146 30 32 chrX 172370293 172370375 -4603765 + L1MB7 LINE L1 6094 6175 -9 309 26 0 0 chrX 172370766 172370804 -4603336 + (TG)n Simple_repeat Simple_repeat 1 38 0 337 252 14 41 chrX 172372654 172372801 -4601339 + L1MC4 LINE L1 6849 6991 -1051 25 51 0 0 chrX 172373039 172373078 -4601062 + AT_rich Low_complexity Low_complexity 1 39 0 3875 124 78 20 chrX 172373516 172374208 -4599932 - L1PA16 LINE L1 0 6166 5435 603 164 48 25 chrX 172374234 172374449 -4599691 + L1 LINE L1 5197 5420 -746 367 274 0 0 chrX 172374941 172375025 -4599115 - MIR SINE MIR -60 148 65 21 0 0 0 chrX 172375396 172375417 -4598723 + AT_rich Low_complexity Low_complexity 1 21 0 362 105 0 18 chrX 172375599 172375656 -4598484 - MADE1 DNA Mariner 0 80 25 1237 311 11 78 chrX 172375755 172376227 -4597913 + L1 LINE L1 2352 2791 -3355 800 176 136 5 chrX 172376677 172376898 -4597242 - L1MA8 LINE L1 -5 6286 6037 2275 85 3 0 chrX 172376940 172377233 -4596907 - AluY SINE Alu -17 294 1 366 335 25 5 chrX 172377262 172377462 -4596678 - L1M1 LINE L1 -2409 5156 4953 8968 58 1 1 chrX 172377587 172378714 -4595426 - L1P LINE L1 -4967 1179 53 22681 35 2 0 chrX 172378714 172382252 -4591888 + L1PA4 LINE L1 2612 6154 -1 402 306 98 33 chrX 172382294 172382343 -4591797 - L1M1 LINE L1 -2780 4785 4741 2240 112 0 3 chrX 172382343 172382648 -4591492 + AluSx SINE Alu 1 304 -8 402 306 98 33 chrX 172382648 172382843 -4591297 - L1M1 LINE L1 -2824 4741 4525 6202 153 11 15 chrX 172382850 172384568 -4589572 - L1MA2 LINE L1 0 6304 4590 842 269 41 47 chrX 172384775 172385381 -4588759 - L1M1 LINE L1 -4579 3167 2479 24 91 0 0 chrX 172385622 172385688 -4588452 + AT_rich Low_complexity Low_complexity 1 66 0 2389 87 0 3 chrX 172385852 172386161 -4587979 - AluSq SINE Alu -5 308 1 5165 189 26 13 chrX 172387385 172388449 -4585691 - Tigger6a DNA MER2_type -1 1082 5 451 163 0 0 chrX 172389539 172389619 -4584521 - MER116 DNA Mariner 0 80 1 487 304 31 16 chrX 172389818 172390012 -4584128 + MIR SINE MIR 66 262 0 5485 154 51 5 chrX 172391171 172392445 -4581695 + L1MA7 LINE L1 4952 6289 -2 1434 172 75 42 chrX 172392675 172393006 -4581134 - MER2 DNA MER2_type -2 342 1 272 195 78 52 chrX 172394664 172394741 -4579399 + MER91C DNA MER1_type 35 113 -27 283 288 51 74 chrX 172394886 172395316 -4578824 + L1M4 LINE L1 4413 4832 -1314 2721 268 78 41 chrX 172395806 172395921 -4578219 + L1M4 LINE L1 3645 3754 -2392 1458 182 64 72 chrX 172395921 172396312 -4577828 + MLT1B LTR MaLR 3 390 0 2721 268 78 41 chrX 172396312 172397723 -4576417 + L1M4 LINE L1 3754 5228 -918 1861 114 0 0 chrX 172397727 172397972 -4576168 + AluSx SINE Alu 1 245 -67 3477 141 19 37 chrX 172397974 172398763 -4575377 + L1MA4 LINE L1 5110 5889 -411 583 117 0 0 chrX 172398763 172398853 -4575287 + L1MA4 LINE L1 6199 6292 -8 2558 47 7 0 chrX 172400161 172400460 -4573680 + AluY SINE Alu 1 301 -10 211 162 0 59 chrX 172400858 172400926 -4573214 + CT-rich Low_complexity Low_complexity 1 64 0 230 140 0 20 chrX 172402456 172402506 -4571634 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 25 31 0 0 chrX 172402575 172402607 -4571533 + AT_rich Low_complexity Low_complexity 1 32 0 279 281 60 48 chrX 172402659 172402878 -4571262 - HAL1b LINE L1 -106 2401 794 408 282 0 39 chrX 172402930 172403086 -4571054 - HAL1b LINE L1 -437 911 762 338 261 0 33 chrX 172403222 172403314 -4570826 - MLT1J2 LTR MaLR -298 152 64 1301 277 24 21 chrX 172403333 172403752 -4570388 - L1MC/D LINE L1 -2129 5679 5260 1765 138 41 80 chrX 172404104 172404421 -4569719 + THE1C LTR MaLR 1 302 -73 2222 109 3 0 chrX 172404421 172404723 -4569417 + AluSp SINE Alu 1 303 -10 1765 138 41 80 chrX 172404723 172404795 -4569345 + THE1C LTR MaLR 302 375 0 11278 166 74 37 chrX 172405167 172408065 -4566075 - L1MA3 LINE L1 0 7724 4629 1695 105 16 0 chrX 172408065 172408323 -4565817 - L1MA1 LINE L1 -8 6294 6033 11278 166 74 37 chrX 172408323 172409389 -4564751 - L1MA3 LINE L1 -3095 4629 3604 4465 69 5 5 chrX 172409392 172409984 -4564156 - L1PA7 LINE L1 0 6154 5563 2343 48 40 0 chrX 172409984 172410336 -4563804 + L1PA7 LINE L1 5199 5561 -593 * 4214 106 38 38 chrX 172410334 172411116 -4563024 - L1MA3 LINE L1 -3956 3609 2828 4805 79 50 131 chrX 172411116 172412015 -4562125 - LTR12 LTR ERV1 0 826 1 393 224 83 68 chrX 172412165 172412429 -4561711 - pTR5 LTR ERV1 -1428 1010 743 16024 153 46 12 chrX 172412429 172415153 -4558987 - L1M1 LINE L1 -4734 2831 15 2452 74 0 0 chrX 172415689 172415988 -4558152 - AluY SINE Alu -12 299 1 22 0 0 0 chrX 172616787 172616809 -4357331 + GC_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chrX 172616956 172616990 -4357150 + (T)n Simple_repeat Simple_repeat 1 34 0 293 281 21 0 chrX 172617012 172617108 -4357032 + MIR SINE MIR 163 260 -2 2700 63 15 5 chrX 172617987 172618381 -4355759 - L1M1 LINE L1 -642 5662 5265 1477 204 34 98 chrX 172618474 172618508 -4355632 - MLT1C LTR MaLR 0 467 432 580 215 162 78 chrX 172618508 172618829 -4355311 - MER7A DNA MER2_type 0 346 1 1477 204 34 98 chrX 172618829 172619293 -4354847 - MLT1C LTR MaLR -35 432 1 295 333 0 24 chrX 172619293 172619416 -4354724 + MER94 DNA DNA 5 124 -10 619 240 128 0 chrX 172619522 172619701 -4354439 - MER58A DNA MER1_type -13 211 10 246 98 73 0 chrX 172619862 172619944 -4354196 + (TA)n Simple_repeat Simple_repeat 1 88 0 2097 118 3 7 chrX 172619947 172620236 -4353904 - AluSx SINE Alu -24 288 1 201 246 18 18 chrX 172620360 172620417 -4353723 + L2 LINE L2 3255 3311 -2 247 193 57 80 chrX 172620581 172620669 -4353471 - MIR SINE MIR -70 192 107 2098 98 7 30 chrX 172621015 172621320 -4352820 + AluSg SINE Alu 1 298 -12 204 359 19 0 chrX 172621756 172621809 -4352331 - L2 LINE L2 -90 3182 3129 508 305 17 22 chrX 172621810 172622111 -4352029 - LTR16A LTR ERVL -9 441 90 2155 92 0 33 chrX 172623189 172623513 -4350627 + AluSc SINE Alu 1 309 0 22 0 0 0 chrX 172623848 172623870 -4350270 + AT_rich Low_complexity Low_complexity 1 22 0 2472 95 0 0 chrX 172623873 172624177 -4349963 + AluSx SINE Alu 1 304 -8 24 0 0 0 chrX 172624866 172624890 -4349250 + AT_rich Low_complexity Low_complexity 1 24 0 294 339 39 15 chrX 172625589 172625719 -4348421 + L2 LINE L2 3139 3271 -1 208 75 25 25 chrX 172625719 172625759 -4348381 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 580 306 35 39 chrX 172626334 172626497 -4347643 + MIR SINE MIR 32 195 -67 2390 71 20 0 chrX 172626497 172626791 -4347349 + AluSc SINE Alu 1 300 -9 580 306 35 39 chrX 172626791 172626859 -4347281 + MIR SINE MIR 195 262 0 2287 95 7 0 chrX 172627415 172627719 -4346421 - AluSq SINE Alu -7 306 1 328 201 22 129 chrX 172628436 172628575 -4345565 + MIR SINE MIR 127 250 -12 26 0 0 0 chrX 172629672 172629698 -4344442 + AT_rich Low_complexity Low_complexity 1 26 0 1956 146 33 0 chrX 172630300 172630421 -4343719 + AluJb SINE Alu 1 117 -195 207 0 0 0 chrX 172630421 172630444 -4343696 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1956 146 33 0 chrX 172630444 172630624 -4343516 + AluJb SINE Alu 117 312 0 384 201 69 57 chrX 172630963 172631122 -4343018 - MER103 DNA DNA -1 165 5 829 309 122 9 chrX 172631838 172632288 -4341852 + L2 LINE L2 2811 3311 -2 21 0 0 0 chrX 172632760 172632781 -4341359 + AT_rich Low_complexity Low_complexity 1 21 0 238 264 0 0 chrX 172636347 172636400 -4337740 + L2 LINE L2 1919 1971 -1343 2653 290 85 25 chrX 172636402 172637708 -4336432 + L2 LINE L2 1922 3308 -5 327 294 32 16 chrX 172637697 172637823 -4336317 + MIR SINE MIR 134 261 -1 * 315 0 0 0 chrX 172641107 172641142 -4332998 + (CA)n Simple_repeat Simple_repeat 2 36 0 231 296 61 45 chrX 172641366 172641498 -4332642 + L2 LINE L2 3179 3312 -1 446 226 9 70 chrX 172642252 172642367 -4331773 - MER5A DNA MER1_type -78 111 4 332 255 61 31 chrX 172642796 172642894 -4331246 - L2 LINE L2 -18 3254 3154 998 188 0 11 chrX 172643375 172643556 -4330584 + MER58A DNA MER1_type 2 180 -44 825 314 68 52 chrX 172643634 172644073 -4330067 - MER115 DNA AcHobo -247 446 1 187 330 126 0 chrX 172644373 172644476 -4329664 + MIR SINE MIR 11 126 -136 305 320 24 9 chrX 172644848 172645034 -4329106 - MER5B DNA MER1_type 0 178 1 2243 99 0 0 chrX 172646363 172646666 -4327474 - AluY SINE Alu -8 303 1 306 0 0 0 chrX 172646678 172646712 -4327428 + (T)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chrX 172647335 172647357 -4326783 + GC_rich Low_complexity Low_complexity 1 22 0 3332 82 34 23 chrX 172647467 172647990 -4326150 + L1MA2 LINE L1 5776 6304 0 1801 196 40 65 chrX 172648367 172648923 -4325217 + MER34 LTR ERV1 1 542 0 2314 108 0 0 chrX 172648923 172649229 -4324911 - AluSx SINE Alu -6 306 1 203 267 122 0 chrX 172649851 172649941 -4324199 + L3b LINE CR1 1289 1389 -194 350 267 25 25 chrX 172650878 172650998 -4323142 + MIR SINE MIR 86 205 -57 384 22 0 0 chrX 172651103 172651148 -4322992 + (CA)n Simple_repeat Simple_repeat 2 46 0 65 43 0 0 chrX 172651375 172651468 -4322672 + AT_rich Low_complexity Low_complexity 1 93 0 935 250 14 0 chrX 172651527 172651747 -4322393 - MER58A DNA MER1_type 0 224 2 1864 120 0 28 chrX 172652667 172652950 -4321190 - AluJb SINE Alu -31 281 7 2370 127 57 55 chrX 172653209 172653372 -4320768 - L1MB4 LINE L1 -5 6175 6014 1958 123 3 3 chrX 172653372 172653656 -4320484 + AluSq SINE Alu 1 284 -29 2370 127 57 55 chrX 172653656 172653847 -4320293 - L1MB4 LINE L1 -166 6014 5817 1397 206 40 30 chrX 172653847 172654143 -4319997 - AluJo SINE Alu -13 299 1 2370 127 57 55 chrX 172654143 172654282 -4319858 - L1MB4 LINE L1 -363 5817 5680 700 125 7 83 chrX 172654426 172654532 -4319608 + MIR SINE MIR 119 213 -49 548 225 47 31 chrX 172654532 172654661 -4319479 + FLAM_A SINE Alu 1 131 -2 700 125 7 83 chrX 172654661 172654698 -4319442 + MIR SINE MIR 213 251 -11 2177 125 0 0 chrX 172655424 172655728 -4318412 + AluSx SINE Alu 1 304 -8 31 26 0 0 chrX 172655756 172655794 -4318346 + AT_rich Low_complexity Low_complexity 1 38 0 245 297 186 21 chrX 172656122 172656267 -4317873 + MIR3 SINE MIR 9 177 -31 655 310 86 12 chrX 172656388 172656633 -4317507 + LTR16C LTR ERVL 1 263 -228 1163 93 0 0 chrX 172656660 172656810 -4317330 - AluSq SINE Alu -159 154 5 707 256 50 5 chrX 172656922 172657121 -4317019 + LTR16C LTR ERVL 280 487 -4 189 298 193 35 chrX 172657622 172657736 -4316404 + L2 LINE L2 3137 3268 -4 457 207 36 45 chrX 172659348 172659459 -4314681 - MIR SINE MIR -67 195 86 435 277 4 94 chrX 172659456 172659691 -4314449 - L2 LINE L2 -21 3292 3079 * 207 191 24 0 chrX 172659968 172660010 -4314130 + (ATG)n Simple_repeat Simple_repeat 3 45 0 1565 210 36 31 chrX 172660142 172660618 -4313522 - MER113 DNA MER1_type? -33 488 11 990 186 117 23 chrX 172660893 172661335 -4312805 - MLT1E2 LTR MaLR 0 626 56 242 259 0 17 chrX 172661433 172661491 -4312649 - L2 LINE L2 0 3272 3216 1916 138 3 24 chrX 172662531 172662822 -4311318 + AluJo SINE Alu 1 285 -27 1069 211 13 22 chrX 172663207 172663476 -4310664 + MLT1D LTR MaLR 200 502 -3 1955 154 59 6 chrX 172663541 172663897 -4310243 - THE1C LTR MaLR 0 375 1 6591 112 47 25 chrX 172663897 172664589 -4309551 - THE1C-int LTR MaLR 0 1580 904 2085 121 24 3 chrX 172664589 172664879 -4309261 - AluSx SINE Alu -16 296 1 6591 112 47 25 chrX 172664879 172665256 -4308884 - THE1C-int LTR MaLR -676 904 537 2334 107 3 3 chrX 172665256 172665565 -4308575 - AluSx SINE Alu 0 312 4 6591 112 47 25 chrX 172665565 172666017 -4308123 - THE1C-int LTR MaLR -1043 537 1 1822 159 55 27 chrX 172666017 172666382 -4307758 - THE1C LTR MaLR 0 375 1 1103 335 37 30 chrX 172666383 172667146 -4306994 - HERV16 LTR ERVL -1391 4263 3496 315 354 28 28 chrX 172667928 172668109 -4306031 - HERV16 LTR ERVL -4815 181 1 729 301 45 3 chrX 172668109 172668395 -4305745 - LTR16C LTR ERVL 0 491 194 2288 100 0 0 chrX 172669825 172670115 -4304025 + AluSx SINE Alu 1 290 -22 465 236 99 16 chrX 172670447 172670629 -4303511 - MIR SINE MIR 0 262 66 331 274 88 101 chrX 172670947 172671414 -4302726 + L1ME4a LINE L1 5582 6042 -79 807 147 40 11 chrX 172671701 172671878 -4302262 + MER53 DNA DNA 5 186 -3 2119 120 3 0 chrX 172671904 172672213 -4301927 + AluSg SINE Alu 1 310 0 21 0 0 0 chrX 172672590 172672611 -4301529 + AT_rich Low_complexity Low_complexity 1 21 0 3956 149 31 22 chrX 172672719 172673225 -4300915 + L1MA4 LINE L1 5520 6037 -263 2365 64 6 22 chrX 172673225 172673538 -4300602 + AluY SINE Alu 1 308 -3 3956 149 31 22 chrX 172673538 172673801 -4300339 + L1MA4 LINE L1 6037 6296 -4 722 237 156 9 chrX 172674442 172674666 -4299474 - MIR SINE MIR -3 259 3 2109 124 0 0 chrX 172675210 172675524 -4298616 + AluSq SINE Alu 1 314 0 4255 132 30 9 chrX 172675615 172676307 -4297833 - MER39 LTR ERV1 0 707 1 348 299 24 8 chrX 172676711 172676838 -4297302 - MER5A DNA MER1_type -60 129 1 718 192 33 67 chrX 172677814 172678054 -4296086 - MER67B LTR ERV1 -2 659 428 1645 189 68 43 chrX 172678155 172678599 -4295541 - MER67B LTR ERV1 -206 455 1 1958 109 10 10 chrX 172679151 172679462 -4294678 + AluY SINE Alu 1 311 0 29 84 0 0 chrX 172679593 172679664 -4294476 + AT_rich Low_complexity Low_complexity 1 71 0 187 93 47 0 chrX 172679676 172679719 -4294421 + (TTATA)n Simple_repeat Simple_repeat 5 49 0 360 268 91 39 chrX 172679747 172679883 -4294257 + HAL1 LINE L1 1395 1523 -984 2544 64 0 3 chrX 172679883 172680195 -4293945 - AluY SINE Alu 0 311 1 360 268 91 39 chrX 172680195 172680312 -4293828 + HAL1 LINE L1 1523 1661 -846 635 198 148 25 chrX 172680522 172680684 -4293456 - MER5A DNA MER1_type -1 188 7 1322 292 69 59 chrX 172680781 172681020 -4293120 + L1MDa LINE L1 2427 2662 -3878 2201 116 3 0 chrX 172681020 172681321 -4292819 + AluSx SINE Alu 1 302 -10 1322 292 69 59 chrX 172681321 172681659 -4292481 + L1MDa LINE L1 2662 2995 -3545 1987 132 50 0 chrX 172681659 172681940 -4292200 + AluSg SINE Alu 1 295 -15 1322 292 69 59 chrX 172681940 172682189 -4291951 + L1MDa LINE L1 2995 3240 -3300 201 74 0 0 chrX 172682189 172682216 -4291924 + (CA)n Simple_repeat Simple_repeat 2 28 0 1322 292 69 59 chrX 172682216 172682525 -4291615 + L1MDa LINE L1 3240 3587 -2953 362 348 19 48 chrX 172683057 172683373 -4290767 - L1MDa LINE L1 -6212 328 22 331 308 105 61 chrX 172683813 172684200 -4289940 - MLT1J2 LTR MaLR -2 448 39 2396 79 3 0 chrX 172684200 172684504 -4289636 + AluSc SINE Alu 4 308 -1 331 308 105 61 chrX 172684504 172684545 -4289595 - MLT1J2 LTR MaLR -411 39 1 576 267 175 0 chrX 172685190 172685381 -4288759 + MIR SINE MIR 34 261 -1 24 32 0 0 chrX 172685637 172685668 -4288472 + AT_rich Low_complexity Low_complexity 1 31 0 2300 93 3 0 chrX 172685712 172686002 -4288138 - AluSg SINE Alu -19 291 1 2504 276 15 7 chrX 172686025 172686837 -4287303 - L1ME3A LINE L1 -5 6165 5348 202 54 27 27 chrX 172687108 172687145 -4286995 + (CAAAAA)n Simple_repeat Simple_repeat 5 41 0 320 264 171 21 chrX 172687247 172687387 -4286753 - MIR SINE MIR -21 241 81 355 278 32 40 chrX 172687512 172687638 -4286502 + MIR3 SINE MIR 78 202 -6 468 333 117 17 chrX 172687769 172688009 -4286131 + L2 LINE L2 3005 3268 -4 353 234 62 55 chrX 172688112 172688257 -4285883 - LTR16A1 LTR ERVL -124 333 188 341 361 0 8 chrX 172688967 172689086 -4285054 + L2 LINE L2 3192 3309 -4 22 0 0 0 chrX 172689421 172689443 -4284697 + AT_rich Low_complexity Low_complexity 1 22 0 408 341 7 14 chrX 172691670 172691808 -4282332 - MIR3 SINE MIR -24 184 48 557 239 151 25 chrX 172692619 172692778 -4281362 + MER5A DNA MER1_type 9 187 -2 221 176 0 39 chrX 172692971 172693022 -4281118 + C-rich Low_complexity Low_complexity 1 49 0 210 296 0 68 chrX 172694203 172694335 -4279805 + T-rich Low_complexity Low_complexity 5 127 0 579 66 0 0 chrX 172694763 172694839 -4279301 + (TG)n Simple_repeat Simple_repeat 1 76 0 259 242 95 74 chrX 172698297 172698392 -4275748 + MIR SINE MIR 27 123 -139 195 343 30 0 chrX 172701078 172701145 -4272995 - MIR SINE MIR -66 142 74 239 281 146 0 chrX 172702599 172702681 -4271459 + L2 LINE L2 3160 3253 -19 256 172 16 16 chrX 172702895 172702959 -4271181 + CT-rich Low_complexity Low_complexity 2 65 0 1187 128 46 0 chrX 172703114 172703310 -4270830 + MER2 DNA MER2_type 5 209 -136 24 77 0 0 chrX 172703315 172703367 -4270773 + AT_rich Low_complexity Low_complexity 1 52 0 294 29 0 0 chrX 172704085 172704120 -4270020 + (TG)n Simple_repeat Simple_repeat 2 36 0 277 243 117 19 chrX 172706286 172706389 -4267751 - MLT1H LTR MaLR -7 542 430 1147 241 68 12 chrX 172706431 172706754 -4267386 - MLT1H LTR MaLR -197 352 12 195 281 53 0 chrX 172707678 172707735 -4266405 - L3 LINE CR1 -114 1463 1404 219 214 0 129 chrX 172709226 172709296 -4264844 - L2 LINE L2 -74 3198 3138 370 284 39 24 chrX 172710275 172710402 -4263738 + MIR SINE MIR 107 235 -27 1654 199 36 31 chrX 172710422 172710810 -4263330 - MLT1B LTR MaLR 0 390 1 2043 181 29 52 chrX 172710864 172711237 -4262903 - Charlie1b DNA MER1_type -2249 512 153 2066 132 7 0 chrX 172711237 172711533 -4262607 - AluSx SINE Alu -8 304 7 2043 181 29 52 chrX 172711533 172711683 -4262457 - Charlie1b DNA MER1_type -2608 153 1 226 121 86 0 chrX 172712199 172712257 -4261883 - L1MA7 LINE L1 0 6291 6229 1692 147 34 31 chrX 172712359 172712652 -4261488 - AluSx SINE Alu -18 294 1 278 197 28 0 chrX 172712662 172712733 -4261407 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 328 310 0 0 chrX 172712740 172712827 -4261313 - L1MC4 LINE L1 -1342 6700 6614 * 350 261 0 22 chrX 172712769 172712861 -4261279 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chrX 172712832 172712863 -4261277 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 1708 217 73 28 chrX 172713251 172713675 -4260465 + LTR40b LTR ERVL 1 443 -19 2255 117 14 31 chrX 172713709 172714067 -4260073 + MER47A DNA MER2_type 6 357 -9 372 295 44 96 chrX 172714932 172715318 -4258822 - MLT1J LTR MaLR -142 369 4 186 311 115 68 chrX 172715497 172715732 -4258408 + L2 LINE L2 2837 3082 -231 25 31 0 0 chrX 172717021 172717053 -4257087 + AT_rich Low_complexity Low_complexity 1 32 0 333 332 118 11 chrX 172717325 172717512 -4256628 + MIR SINE MIR 49 255 -7 1044 274 26 13 chrX 172717917 172718224 -4255916 - LTR16A1 LTR ERVL 0 457 147 264 347 67 6 chrX 172718605 172718684 -4255456 - MIR SINE MIR -1 261 188 2123 129 0 16 chrX 172718684 172719001 -4255139 - AluSx SINE Alu 0 312 1 264 347 67 6 chrX 172719001 172719128 -4255012 - MIR SINE MIR -74 188 47 962 187 50 10 chrX 172719216 172719414 -4254726 - MLT1F LTR MaLR -1 566 361 6475 60 0 7 chrX 172719415 172720244 -4253896 - L1PA7 LINE L1 0 6154 5332 * 6947 96 4 7 chrX 172720241 172721245 -4252895 + L1P LINE L1 2217 3217 -2929 2274 109 0 0 chrX 172721245 172721538 -4252602 - AluSx SINE Alu -18 294 2 1576 229 17 32 chrX 172721550 172721895 -4252245 - MLT1F LTR MaLR -202 340 1 2444 88 3 0 chrX 172723416 172723724 -4250416 + AluSp SINE Alu 1 309 -4 1697 134 57 51 chrX 172724417 172724752 -4249388 - MER1B DNA MER1_type 0 337 1 436 299 45 106 chrX 172725334 172725778 -4248362 + L2 LINE L2 2269 2685 -629 1526 209 79 64 chrX 172725778 172726246 -4247894 - MER110 LTR ERV1 0 491 17 594 257 201 12 chrX 172726277 172726646 -4247494 + L2 LINE L2 2722 3159 -154 * 599 339 0 0 chrX 172726638 172726830 -4247310 + MIR SINE MIR 20 211 -51 933 228 55 58 chrX 172726870 172727181 -4246959 - MER110A LTR ERV1 -28 440 131 308 130 0 0 chrX 172727311 172727357 -4246783 + MIR SINE MIR 199 244 -18 338 221 0 52 chrX 172727418 172727495 -4246645 + L2 LINE L2 3241 3313 0 427 373 0 0 chrX 172727495 172727653 -4246487 + L2 LINE L2 3156 3313 0 476 205 106 7 chrX 172727776 172727927 -4246213 + MER103 DNA DNA 1 166 0 2305 99 54 20 chrX 172728577 172728929 -4245211 - THE1B LTR MaLR 0 364 1 1340 219 9 44 chrX 172729170 172729255 -4244885 + MER58B DNA MER1_type 38 124 -2296 1965 170 11 6 chrX 172729255 172729613 -4244527 + MER46B DNA MER2_type 1 235 -1 1340 219 9 44 chrX 172729613 172729842 -4244298 + MER58B DNA MER1_type 124 341 0 290 371 41 24 chrX 172730179 172730349 -4243791 - L3b LINE CR1 0 1583 1411 2314 92 0 0 chrX 172731543 172731836 -4242304 + AluSx SINE Alu 1 293 -19 295 274 24 24 chrX 172732606 172732730 -4241410 - MIR SINE MIR 0 262 139 301 326 116 14 chrX 172733035 172733182 -4240958 - MIR SINE MIR -10 252 91 558 126 11 11 chrX 172733710 172733805 -4240335 - L1PA15 LINE L1 0 6165 6071 303 378 57 69 chrX 172734811 172735095 -4239045 + L2 LINE L2 2853 3132 -140 2560 46 0 3 chrX 172735095 172735397 -4238743 + AluY SINE Alu 1 301 -10 303 378 57 69 chrX 172735397 172735533 -4238607 + L2 LINE L2 3132 3268 -4 311 296 25 0 chrX 172736440 172736521 -4237619 + L2 LINE L2 3227 3309 -4 2183 116 3 0 chrX 172736573 172736867 -4237273 - AluSx SINE Alu -17 295 1 21 0 0 0 chrX 172737125 172737146 -4236994 + AT_rich Low_complexity Low_complexity 1 21 0 338 294 24 0 chrX 172738170 172738255 -4235885 + MER5A DNA MER1_type 61 147 -42 486 0 0 0 chrX 172738437 172738491 -4235649 + (TG)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chrX 172739846 172739870 -4234270 + AT_rich Low_complexity Low_complexity 1 24 0 243 289 167 44 chrX 172740629 172740947 -4233193 - L2 LINE L2 -569 2745 2389 282 358 22 15 chrX 172741206 172741343 -4232797 - MIR SINE MIR -108 154 17 195 204 0 0 chrX 172741386 172741430 -4232710 + A-rich Low_complexity Low_complexity 3 46 0 807 195 130 5 chrX 172741737 172741952 -4232188 + MER5C DNA MER1_type 80 321 -3 590 135 135 47 chrX 172743646 172743816 -4230324 - MER53 DNA DNA 0 189 5 2257 118 0 0 chrX 172743836 172744141 -4229999 - AluSx SINE Alu -7 305 1 1744 169 42 17 chrX 172745992 172746348 -4227792 - MLT1A1 LTR MaLR 0 365 1 2116 101 3 7 chrX 172746610 172746908 -4227232 - AluSg SINE Alu -13 297 1 254 193 57 80 chrX 172747254 172747342 -4226798 + MIR SINE MIR 107 192 -70 201 246 18 18 chrX 172747506 172747563 -4226577 - L2 LINE L2 -2 3311 3255 2054 121 3 7 chrX 172747687 172747976 -4226164 + AluSx SINE Alu 1 288 -24 326 123 59 18 chrX 172747979 172748149 -4225991 + (TA)n Simple_repeat Simple_repeat 2 178 0 561 234 9 0 chrX 172748410 172748521 -4225619 + MER81 DNA DNA 1 112 -2 212 349 37 21 chrX 172748899 172749045 -4225095 + MIR SINE MIR 23 170 -85 2408 73 21 0 chrX 172751151 172751478 -4222662 - L1PA13 LINE L1 -1 6162 5829 2404 142 0 0 chrX 172751478 172751866 -4222274 + L1P LINE L1 4773 5160 -986 219 348 107 0 chrX 172752033 172752145 -4221995 + L2 LINE L2 3149 3272 0 2211 117 0 0 chrX 172754801 172755110 -4219030 + AluSx SINE Alu 1 309 -3 343 305 35 82 chrX 172755614 172755870 -4218270 - L1MC4a LINE L1 -1856 5952 5709 2062 146 0 0 chrX 172755944 172756238 -4217902 - AluSx SINE Alu -18 294 1 3430 135 20 7 chrX 172756342 172756890 -4217250 - LTR38 LTR ERV1 0 556 2 325 172 0 0 chrX 172757137 172757201 -4216939 - L1MB5 LINE L1 -1 6173 6110 9079 164 34 31 chrX 172757203 172759629 -4214511 - L1MA9 LINE L1 -574 5738 3288 2496 164 42 29 chrX 172759629 172760177 -4213963 + L1MA9 LINE L1 5757 6312 0 2076 208 49 0 chrX 172760186 172760633 -4213507 - L1MB5 LINE L1 -54 6120 5652 1622 121 0 9 chrX 172760647 172760879 -4213261 - AluSg/x SINE Alu 0 310 81 321 111 0 0 chrX 172760879 172760924 -4213216 - Alu SINE Alu -257 45 1 304 137 20 0 chrX 172760924 172760975 -4213165 - L1MB5 LINE L1 -505 5669 5618 247 329 0 13 chrX 172761776 172761855 -4212285 - MIR3 SINE MIR -9 199 122 2426 173 54 16 chrX 172761930 172762415 -4211725 - MLT1D LTR MaLR -2 503 1 24 0 0 0 chrX 172763201 172763225 -4210915 + AT_rich Low_complexity Low_complexity 1 24 0 533 182 68 68 chrX 172763915 172764091 -4210049 + MER104 DNA MER2_type 5 180 0 23 0 0 0 chrX 172765076 172765099 -4209041 + AT_rich Low_complexity Low_complexity 1 23 0 2588 52 0 0 chrX 172765851 172766160 -4207980 + AluY SINE Alu 1 309 -2 2270 105 0 7 chrX 172766176 172766481 -4207659 + AluSx SINE Alu 7 309 -3 1724 148 6 64 chrX 172766549 172766860 -4207280 - AluJb SINE Alu -19 293 1 21 36 0 0 chrX 172767340 172767368 -4206772 + AT_rich Low_complexity Low_complexity 1 28 0 2614 82 30 8 chrX 172767529 172767896 -4206244 + THE1C LTR MaLR 1 375 0 27 49 0 0 chrX 172767915 172767956 -4206184 + AT_rich Low_complexity Low_complexity 1 41 0 407 338 26 7 chrX 172768147 172768298 -4205842 - MLT1I LTR MaLR -150 259 106 849 245 90 30 chrX 172768321 172768788 -4205352 + LTR33A LTR ERVL 1 521 -2 356 247 0 0 chrX 172768798 172768871 -4205269 - MLT1I LTR MaLR -332 77 5 487 301 76 93 chrX 172768873 172769996 -4204144 + L2 LINE L2 2211 3313 0 228 238 0 0 chrX 172770011 172770074 -4204066 + CT-rich Low_complexity Low_complexity 3 65 0 2249 124 11 101 chrX 172770194 172770669 -4203471 - MSTB1 LTR MaLR 0 432 1 361 297 125 35 chrX 172770703 172770935 -4203205 + MIR SINE MIR 7 259 -3 470 208 0 0 chrX 172771233 172771339 -4202801 - L1MA7 LINE L1 -6 6285 6180 299 328 224 10 chrX 172773558 172773759 -4200381 - MIR SINE MIR -14 248 5 387 271 42 51 chrX 172774024 172774142 -4199998 - L2 LINE L2 0 3313 3197 1350 146 41 4 chrX 172774758 172775025 -4199115 + L1MA4 LINE L1 6016 6292 -8 22 56 0 0 chrX 172775053 172775089 -4199051 + AT_rich Low_complexity Low_complexity 1 36 0 325 309 70 23 chrX 172775138 172775394 -4198746 - L1ME LINE L1 -306 5815 5548 408 331 11 28 chrX 172775441 172775622 -4198518 - L1ME LINE L1 -734 5432 5255 23 68 0 0 chrX 172775807 172775851 -4198289 + AT_rich Low_complexity Low_complexity 1 44 0 182 288 61 15 chrX 172776059 172776125 -4198015 - L2 LINE L2 0 3272 3204 260 285 81 57 chrX 172776231 172776354 -4197786 + MIR3 SINE MIR 65 190 -18 664 259 103 5 chrX 172778709 172778885 -4195255 - MIR SINE MIR -48 214 18 5273 52 0 1 chrX 172778885 172779537 -4194603 - L1PA8 LINE L1 0 6172 5522 522 264 55 22 chrX 172781518 172781700 -4192440 + MIR SINE MIR 72 259 -3 243 189 0 19 chrX 172781701 172781754 -4192386 + (ATG)n Simple_repeat Simple_repeat 2 53 0 420 82 0 0 chrX 172782764 172782825 -4191315 + (CA)n Simple_repeat Simple_repeat 2 62 0 605 339 138 27 chrX 172782833 172783147 -4190993 - L2 LINE L2 -37 3276 2998 324 0 0 0 chrX 172783147 172783183 -4190957 + (CA)n Simple_repeat Simple_repeat 1 36 0 605 339 138 27 chrX 172783183 172783561 -4190579 - L2 LINE L2 -315 2998 2500 210 330 113 28 chrX 172783904 172784010 -4190130 - L2 LINE L2 -37 3235 3121 567 223 25 11 chrX 172784272 172784436 -4189704 - L1ME LINE L1 -474 5647 5481 1933 130 43 7 chrX 172784437 172784738 -4189402 + MER7A DNA MER2_type 1 310 -36 2283 110 7 3 chrX 172784754 172785064 -4189076 - AluSx SINE Alu -1 311 1 214 257 238 0 chrX 172785300 172785405 -4188735 - L2 LINE L2 0 3272 3143 970 306 11 11 chrX 172785503 172785768 -4188372 + LTR16C LTR ERVL 79 343 -148 3230 142 143 13 chrX 172786700 172787371 -4186769 + L1MA4A LINE L1 5521 6278 -25 607 265 35 55 chrX 172787620 172787820 -4186320 - MIR SINE MIR -42 220 25 288 373 16 0 chrX 172788121 172788247 -4185893 + L1MC/D LINE L1 5537 5664 -2144 868 248 92 89 chrX 172788450 172788958 -4185182 - L2 LINE L2 0 3313 2804 1345 186 46 0 chrX 172788961 172789275 -4184865 - MER33 DNA MER1_type -1 323 1 2268 249 54 42 chrX 172789279 172789962 -4184178 - L2 LINE L2 -515 2799 2109 207 96 58 0 chrX 172790081 172790133 -4184007 + (TA)n Simple_repeat Simple_repeat 2 56 0 536 293 20 80 chrX 172790218 172790617 -4183523 + L1MCb LINE L1 2 376 -5669 319 138 0 17 chrX 172790665 172790723 -4183417 - L1MDa LINE L1 -4625 1915 1859 333 238 36 12 chrX 172790739 172790823 -4183317 + MLT1I LTR MaLR 259 344 -65 2360 71 0 10 chrX 172791410 172791706 -4182434 - AluY SINE Alu -18 293 1 210 37 0 0 chrX 172792773 172792800 -4181340 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 7847 145 150 3 chrX 172793265 172794757 -4179383 + L1PA13 LINE L1 2506 4216 -1930 6272 85 18 1 chrX 172794760 172796016 -4178124 + L1PA13 LINE L1 4874 6163 0 351 244 13 0 chrX 172796478 172796556 -4177584 - L2 LINE L2 -1 3312 3234 300 302 99 45 chrX 172797491 172797713 -4176427 + MIR SINE MIR 29 262 0 27580 42 4 0 chrX 172798952 172803133 -4171007 - L1PA5 LINE L1 -1 6153 1956 2358 89 3 0 chrX 172803296 172803600 -4170540 - AluY SINE Alu -6 305 1 329 255 95 41 chrX 172803803 172803943 -4170197 - MER21B LTR ERV1 -359 572 326 180 227 120 67 chrX 172804544 172804619 -4169521 + MIR3 SINE MIR 115 193 -15 191 185 74 19 chrX 172804810 172804864 -4169276 - L2 LINE L2 -1 3271 3215 686 306 40 16 chrX 172804963 172805215 -4168925 - MIR SINE MIR -1 261 4 6368 37 10 0 chrX 172805403 172806146 -4167994 - L1P LINE L1 -1512 4634 3881 2473 21 0 3 chrX 172806146 172806451 -4167689 + L1PA2 LINE L1 5862 6155 0 6368 37 10 0 chrX 172806451 172806493 -4167647 - L1P LINE L1 -2265 3881 3841 1905 77 4 0 chrX 172808066 172808301 -4165839 + AluY SINE Alu 1 236 -75 26 30 0 0 chrX 172808408 172808441 -4165699 + AT_rich Low_complexity Low_complexity 1 33 0 2057 83 4 0 chrX 172810967 172811221 -4162919 + AluSc SINE Alu 28 282 -27 22 0 0 0 chrX 172811221 172811243 -4162897 + AT_rich Low_complexity Low_complexity 1 22 0 603 278 62 17 chrX 172811257 172811433 -4162707 + MIR SINE MIR 2 185 -77 214 304 14 0 chrX 172811436 172811505 -4162635 + (TA)n Simple_repeat Simple_repeat 1 70 0 3322 290 73 23 chrX 172811672 172813180 -4160960 + L2 LINE L2 1732 3313 0 22 0 0 0 chrX 172813794 172813816 -4160324 + AT_rich Low_complexity Low_complexity 1 22 0 1632 179 27 7 chrX 172813848 172814145 -4159995 + AluJo SINE Alu 3 305 -7 2171 95 7 7 chrX 172814502 172814797 -4159343 + AluSg SINE Alu 1 295 -15 387 41 0 0 chrX 172815393 172815442 -4158698 + (TTTTC)n Simple_repeat Simple_repeat 2 50 0 2063 132 0 3 chrX 172815444 172815908 -4158232 - AluSx SINE Alu 0 463 1 359 327 46 7 chrX 172816159 172816312 -4157828 - L2 LINE L2 -4 3309 3151 231 250 0 0 chrX 172816313 172816381 -4157759 + GA-rich Low_complexity Low_complexity 3 70 0 948 293 143 11 chrX 172816649 172817083 -4157057 - L2 LINE L2 -1 3312 2822 626 331 51 20 chrX 172817268 172817761 -4156379 + L2 LINE L2 2661 3247 -66 666 275 64 14 chrX 172817764 172817982 -4156158 - MIR SINE MIR 0 262 34 344 340 51 82 chrX 172818054 172818407 -4155733 + L2 LINE L2 2928 3269 -3 4908 130 0 0 chrX 172818849 172819857 -4154283 - L1PA15 LINE L1 0 6165 5190 208 280 13 67 chrX 172820706 172820781 -4153359 - L2 LINE L2 -9 3263 3193 197 274 66 47 chrX 172821235 172821341 -4152799 + MIR SINE MIR 100 207 -55 393 133 48 24 chrX 172822099 172822182 -4151958 - L1MA9 LINE L1 -42 6270 6186 287 273 0 11 chrX 172822389 172822477 -4151663 + CT-rich Low_complexity Low_complexity 2 88 0 439 339 156 0 chrX 172822659 172822845 -4151295 - MIR SINE MIR -33 229 15 348 373 94 0 chrX 172822989 172823222 -4150918 - L2 LINE L2 -48 3265 3011 768 339 33 20 chrX 172823694 172824089 -4150051 - L2 LINE L2 -815 2499 2100 263 45 0 45 chrX 172824394 172824438 -4149702 - L1PA5 LINE L1 0 6154 6113 * 1323 20 0 0 chrX 172824436 172824587 -4149553 + L1PA6 LINE L1 5731 5881 -273 1995 125 0 17 chrX 172825704 172826000 -4148140 + AluSx SINE Alu 1 291 -21 269 248 43 68 chrX 172826197 172826358 -4147782 - L1MEd LINE L1 -4917 1202 1046 27 0 0 0 chrX 172826890 172826917 -4147223 + AT_rich Low_complexity Low_complexity 1 27 0 5514 144 49 6 chrX 172827003 172828256 -4145884 - L1MA6 LINE L1 -3 6297 4996 240 111 0 0 chrX 172828256 172828292 -4145848 + (A)n Simple_repeat Simple_repeat 1 36 0 1988 118 7 0 chrX 172828308 172828579 -4145561 - AluSx SINE Alu -17 295 23 214 273 0 18 chrX 172829994 172830049 -4144091 + L2 LINE L2 3192 3245 -68 379 341 8 8 chrX 172830201 172830330 -4143810 + MIR SINE MIR 4 132 -130 24 32 0 0 chrX 172830449 172830480 -4143660 + AT_rich Low_complexity Low_complexity 1 31 0 265 288 0 25 chrX 172830666 172830746 -4143394 - LTR33A LTR ERVL 0 523 446 929 237 14 14 chrX 172831376 172831595 -4142545 + MER58A DNA MER1_type 5 223 -1 309 169 0 0 chrX 172832247 172832306 -4141834 + GA-rich Low_complexity Low_complexity 2 60 0 2372 91 0 7 chrX 172833339 172833646 -4140494 - AluSq SINE Alu -8 305 1 1008 224 0 0 chrX 172833692 172833884 -4140256 - MER3 DNA MER1_type -11 198 7 560 222 123 18 chrX 172834146 172834317 -4139823 - MER5A DNA MER1_type 0 189 1 378 300 108 0 chrX 172835275 172835405 -4138735 + MIR SINE MIR 111 254 -8 381 235 87 66 chrX 172835912 172836095 -4138045 + MER91B DNA MER1_type 1 187 -3 187 270 63 16 chrX 172836991 172837054 -4137086 - L2 LINE L2 -1313 2001 1936 2232 101 0 3 chrX 172837305 172837601 -4136539 + AluSq SINE Alu 1 295 -18 662 211 67 98 chrX 172837758 172838104 -4136036 + L1MC5 LINE L1 6884 7218 -743 4585 149 30 4 chrX 172839018 172839156 -4134984 + L1PA16 LINE L1 5357 5490 -676 2242 101 0 13 chrX 172839156 172839463 -4134677 + AluSg SINE Alu 1 303 -7 4585 149 30 4 chrX 172839463 172840094 -4134046 + L1PA16 LINE L1 5490 6146 -20 614 297 92 4 chrX 172840202 172840431 -4133709 + MIR SINE MIR 13 261 -1 405 329 86 51 chrX 172841050 172841124 -4133016 - MLT1K LTR MaLR 0 588 518 354 98 0 0 chrX 172841124 172841175 -4132965 + (CA)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chrX 172841174 172841203 -4132937 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 405 329 86 51 chrX 172841175 172841523 -4132617 - MLT1K LTR MaLR -70 518 180 25 0 0 0 chrX 172842512 172842537 -4131603 + AT_rich Low_complexity Low_complexity 1 25 0 854 93 0 0 chrX 172842771 172842879 -4131261 + AluSq/x SINE Alu 1 108 -205 219 114 0 0 chrX 172843153 172843188 -4130952 + (CA)n Simple_repeat Simple_repeat 2 36 0 3759 50 0 0 chrX 172843195 172843660 -4130480 + L1PA5 LINE L1 5684 6148 -6 326 257 14 0 chrX 172843660 172843734 -4130406 - MER58A DNA MER1_type -149 75 1 30 27 0 0 chrX 172843756 172843793 -4130347 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chrX 172844727 172844748 -4129392 + AT_rich Low_complexity Low_complexity 1 21 0 6293 81 8 1 chrX 172844748 172845622 -4128518 - L1MA1 LINE L1 0 6302 5423 227 318 11 0 chrX 172845942 172846030 -4128110 - L1MC4 LINE L1 -1350 6692 6604 279 133 0 0 chrX 172846066 172846111 -4128029 + (TG)n Simple_repeat Simple_repeat 2 46 0 600 50 0 0 chrX 172847027 172847107 -4127033 + (TC)n Simple_repeat Simple_repeat 2 81 0 249 209 0 33 chrX 172847111 172847202 -4126938 + L1MC4 LINE L1 6614 6701 -1341 267 79 0 0 chrX 172847484 172847522 -4126618 + (TG)n Simple_repeat Simple_repeat 1 38 0 317 259 26 24 chrX 172847680 172847802 -4126338 - MLT1H LTR MaLR -375 174 61 303 342 90 32 chrX 172848217 172848372 -4125768 - MIR3 SINE MIR -30 178 15 628 261 6 6 chrX 172848575 172848732 -4125408 - MER69A DNA AcHobo -2 175 19 203 273 61 76 chrX 172849367 172849499 -4124641 - MIR SINE MIR -96 166 37 1371 7 0 0 chrX 172850163 172850317 -4123823 + AluYb8 SINE Alu 164 317 -1 1419 305 136 54 chrX 172851158 172851412 -4122728 + L2 LINE L2 1025 1257 -2057 198 0 0 0 chrX 172851412 172851434 -4122706 + (TC)n Simple_repeat Simple_repeat 1 22 0 1543 193 0 11 chrX 172851442 172851722 -4122418 - AluJo SINE Alu -30 282 6 1419 305 136 54 chrX 172851722 172852592 -4121548 + L2 LINE L2 1263 2251 -1063 1576 229 80 31 chrX 172852620 172853108 -4121032 - MLT1F LTR MaLR 0 542 31 1150 333 99 25 chrX 172853122 172853504 -4120636 + L2 LINE L2 2325 2677 -636 1649 220 53 16 chrX 172853504 172853954 -4120186 - MLT1C LTR MaLR 0 467 1 1150 333 99 25 chrX 172853954 172854478 -4119662 + L2 LINE L2 2677 3300 -13 516 163 231 38 chrX 172855035 172855195 -4118945 + MIR SINE MIR 72 262 0 2184 210 72 4 chrX 172855334 172855805 -4118335 - MLT1D LTR MaLR -2 503 1 885 199 32 16 chrX 172856109 172856295 -4117845 + MER20 DNA MER1_type 31 219 0 217 200 0 20 chrX 172856336 172856386 -4117754 + MER5A DNA MER1_type 4 52 -137 202 158 105 0 chrX 173056421 173056459 -3917681 + MER5A DNA MER1_type 127 168 -21 520 291 24 12 chrX 173056484 173056649 -3917491 - MER5B DNA MER1_type 0 178 12 24 0 0 0 chrX 173057586 173057610 -3916530 + AT_rich Low_complexity Low_complexity 1 24 0 2388 21 80 0 chrX 173057760 173058085 -3916055 - AluY SINE Alu 0 348 1 324 271 0 0 chrX 173059322 173059392 -3914748 + MER3 DNA MER1_type 5 74 -135 460 239 39 8 chrX 173059442 173059572 -3914568 + MER3 DNA MER1_type 76 209 0 428 267 18 11 chrX 173059593 173059730 -3914410 - MER5A DNA MER1_type -42 136 9 319 278 28 60 chrX 173059977 173060028 -3914112 + L1ME3A LINE L1 4476 4527 -1619 1127 30 0 0 chrX 173060028 173060160 -3913980 + L1PA3 LINE L1 6021 6152 -3 319 278 28 60 chrX 173060160 173060324 -3913816 + L1ME3A LINE L1 4527 4684 -1462 383 293 117 11 chrX 173060851 173061117 -3913023 + L1ME3A LINE L1 5318 5611 -559 1385 209 76 7 chrX 173061174 173061476 -3912664 - MER58B DNA MER1_type -15 326 4 203 233 178 0 chrX 173061488 173061561 -3912579 + MER5A DNA MER1_type 9 94 -95 228 160 80 0 chrX 173061681 173061731 -3912409 + L1ME3A LINE L1 5696 5749 -610 897 193 12 6 chrX 173061731 173061902 -3912238 + FRAM SINE Alu 1 171 -5 321 229 236 0 chrX 173061906 173062063 -3912077 + L1ME3A LINE L1 5745 5938 -232 2771 257 73 40 chrX 173062151 173063336 -3910804 + L1ME1 LINE L1 50 1274 -5122 * 2865 270 40 20 chrX 173063309 173064776 -3909364 + L1ME1 LINE L1 2064 3529 -2686 732 233 102 86 chrX 173064782 173065237 -3908903 + L1ME1 LINE L1 5752 6191 -44 207 0 0 0 chrX 173065184 173065207 -3908933 + (TA)n Simple_repeat Simple_repeat 2 24 0 457 233 93 13 chrX 173065207 173065282 -3908858 + L1MA10 LINE L1 6238 6332 -2 339 177 31 0 chrX 173065459 173065555 -3908585 + (TA)n Simple_repeat Simple_repeat 1 99 0 352 248 51 25 chrX 173065614 173065736 -3908404 - MLT1I LTR MaLR -255 154 31 28 29 0 0 chrX 173065879 173065914 -3908226 + AT_rich Low_complexity Low_complexity 1 35 0 239 378 15 25 chrX 173066231 173066432 -3907708 - MLT1K LTR MaLR -287 301 103 204 40 0 0 chrX 173066530 173066555 -3907585 + (GGAA)n Simple_repeat Simple_repeat 1 25 0 2306 108 22 25 chrX 173067013 173067375 -3906765 + THE1B LTR MaLR 1 361 -3 10631 91 48 3 chrX 173067378 173068891 -3905249 + THE1B-int LTR MaLR 1 1580 0 653 88 53 79 chrX 173068891 173069005 -3905135 + THE1B LTR MaLR 1 111 -264 26 0 0 0 chrX 173069708 173069734 -3904406 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chrX 173069996 173070025 -3904115 + AT_rich Low_complexity Low_complexity 1 29 0 189 107 0 0 chrX 173071028 173071056 -3903084 + (CA)n Simple_repeat Simple_repeat 1 28 0 351 336 73 12 chrX 173071158 173071417 -3902723 - L1MC/D LINE L1 -2029 5779 5505 3145 129 13 4 chrX 173071503 173071975 -3902165 + LOR1a LTR ERV1 1 476 -21 1251 213 14 10 chrX 173071976 173072267 -3901873 + MER31-int LTR ERV1 949 1240 -3696 2049 232 33 108 chrX 173072718 173073728 -3900412 + MER31-int LTR ERV1 2477 3419 -1517 568 167 0 0 chrX 173073872 173073968 -3900172 - L1MA9 LINE L1 -411 5901 5806 435 353 99 60 chrX 173073978 173074465 -3899675 + L1PBb LINE L1 11 516 -6333 242 340 24 48 chrX 173074679 173074888 -3899252 + L1PBb LINE L1 777 980 -5869 450 288 0 0 chrX 173075333 173075465 -3898675 + L1PBb LINE L1 1335 1466 -5383 2680 143 40 6 chrX 173075465 173075934 -3898206 - L1M2 LINE L1 -574 5738 5254 7260 164 44 22 chrX 173075947 173076403 -3897737 + L1 LINE L1 3749 4193 -1953 306 0 0 0 chrX 173076403 173076437 -3897703 + (TA)n Simple_repeat Simple_repeat 1 34 0 7260 164 44 22 chrX 173076437 173077439 -3896701 + L1 LINE L1 4193 5239 -907 24 67 0 0 chrX 173078172 173078217 -3895923 + AT_rich Low_complexity Low_complexity 1 45 0 703 81 0 10 chrX 173079655 173079754 -3894386 + MER4A LTR ERV1 1 98 -566 1919 103 157 85 chrX 173079754 173080131 -3894009 + MER4A LTR ERV1 261 664 0 4769 70 46 0 chrX 173080316 173080947 -3893193 - PABL_A LTR ERV1 0 660 1 31280 93 20 15 chrX 173080947 173085936 -3888204 - PABL_A-int LTR ERV1 0 5015 1 5019 74 15 0 chrX 173085936 173086586 -3887554 - PABL_A LTR ERV1 0 660 1 592 233 37 60 chrX 173087014 173087123 -3887017 - L1MC5 LINE L1 -49 7912 7809 829 256 33 14 chrX 173087123 173087338 -3886802 + MER20 DNA MER1_type 1 219 0 592 233 37 60 chrX 173087338 173087443 -3886697 - L1MC5 LINE L1 -152 7809 7703 244 296 95 4 chrX 173087548 173087656 -3886484 + LTR33A LTR ERVL 39 162 -359 1535 235 34 20 chrX 173087772 173088181 -3885959 + MLT1C LTR MaLR 53 467 0 416 317 124 15 chrX 173088181 173088441 -3885699 + LTR33A LTR ERVL 225 513 -10 1293 193 5 0 chrX 173088718 173088936 -3885204 - MER58A DNA MER1_type -2 222 4 21 36 0 0 chrX 173090276 173090304 -3883836 + AT_rich Low_complexity Low_complexity 1 28 0 453 159 0 0 chrX 173091186 173091255 -3882885 - Tigger1 DNA MER2_type -1 2417 2349 5013 138 10 2 chrX 173091255 173092049 -3882091 - Tigger1 DNA MER2_type -190 2228 1429 9939 224 19 70 chrX 173092062 173096580 -3877560 + L1M2 LINE L1 28 4308 -2540 1963 91 36 4 chrX 173097065 173097366 -3876774 - AluY SINE Alu 0 310 1 252 256 68 45 chrX 173097702 173097835 -3876305 + L1M4 LINE L1 2576 2711 -3435 339 280 67 17 chrX 173097964 173098264 -3875876 + L1M4 LINE L1 2950 3264 -2882 1821 184 16 16 chrX 173098591 173098964 -3875176 - L1MB1 LINE L1 0 6168 5793 384 22 0 0 chrX 173098964 173099009 -3875131 + (TC)n Simple_repeat Simple_repeat 2 46 0 1821 184 16 16 chrX 173099009 173099022 -3875118 - L1MB1 LINE L1 -374 5794 5782 206 242 15 0 chrX 173099022 173099088 -3875052 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 988 206 5 5 chrX 173099089 173099288 -3874852 - L1MB1 LINE L1 -375 5793 5595 239 279 23 0 chrX 173099580 173099666 -3874474 + L1M2 LINE L1 4607 4694 -2154 272 139 35 26 chrX 173099674 173099789 -3874351 + (TAGA)n Simple_repeat Simple_repeat 1 116 0 337 286 104 0 chrX 173099808 173099990 -3874150 + L1M2 LINE L1 4725 4925 -1923 502 321 151 50 chrX 173100055 173100938 -3873202 + L1M2 LINE L1 4975 5954 -894 1134 288 140 18 chrX 173100948 173101611 -3872529 + L1MC4a LINE L1 5273 6016 -1792 1964 113 78 0 chrX 173101614 173101898 -3872242 + AluSx SINE Alu 3 308 -4 1105 287 106 40 chrX 173102211 173103112 -3871028 + L1MC4 LINE L1 6409 7493 -395 452 232 46 20 chrX 173103081 173103232 -3870908 + L1MC5 LINE L1 7293 7447 -514 * 227 254 82 25 chrX 173103390 173103512 -3870628 + L1MC4 LINE L1 7759 7887 -155 216 86 0 0 chrX 173103525 173103560 -3870580 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chrX 173104919 173104940 -3869200 + AT_rich Low_complexity Low_complexity 1 21 0 353 320 79 108 chrX 173105969 173106322 -3867818 - L2 LINE L2 0 3272 2930 433 277 123 36 chrX 173107333 173107528 -3866612 - MIR SINE MIR 0 262 51 21 36 0 0 chrX 173109006 173109034 -3865106 + AT_rich Low_complexity Low_complexity 1 28 0 234 210 20 50 chrX 173110534 173110634 -3863506 + T-rich Low_complexity Low_complexity 3 99 0 23 33 0 0 chrX 173110714 173110744 -3863396 + AT_rich Low_complexity Low_complexity 1 30 0 3877 150 51 17 chrX 173112727 173113191 -3860949 + MER50 LTR ERV1 1 497 -237 2029 135 41 36 chrX 173113191 173113553 -3860587 - THE1B LTR MaLR 0 364 1 3877 150 51 17 chrX 173113553 173113776 -3860364 + MER50 LTR ERV1 497 711 -23 222 333 48 80 chrX 173113809 173114121 -3860019 - L2 LINE L2 -53 3219 2918 216 0 0 0 chrX 173114278 173114302 -3859838 + (T)n Simple_repeat Simple_repeat 1 24 0 181 50 25 50 chrX 173114320 173114360 -3859780 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2183 114 0 0 chrX 173114619 173114916 -3859224 - AluSx SINE Alu -15 297 1 1082 178 27 13 chrX 173115035 173115260 -3858880 + L1MA9 LINE L1 6044 6271 -41 261 0 0 0 chrX 173115260 173115289 -3858851 + (TA)n Simple_repeat Simple_repeat 1 29 0 436 299 16 16 chrX 173116293 173116420 -3857720 + L2 LINE L2 3185 3311 -2 240 354 27 7 chrX 173116458 173116605 -3857535 - MIR SINE MIR -45 217 68 1516 238 159 13 chrX 173116929 173117475 -3856665 - MLT1E2 LTR MaLR 0 626 1 233 260 91 0 chrX 173118412 173118489 -3855651 - MLT1J2 LTR MaLR -52 398 315 3679 71 45 4 chrX 173118694 173119191 -3854949 + L1PA11 LINE L1 5649 6169 -5 243 0 0 0 chrX 173119191 173119218 -3854922 + (CTAA)n Simple_repeat Simple_repeat 3 29 0 276 30 0 0 chrX 173119354 173119387 -3854753 + (TTTTG)n Simple_repeat Simple_repeat 1 33 0 423 265 56 133 chrX 173119407 173119894 -3854246 - MLT1H LTR MaLR -109 446 2 814 225 0 11 chrX 173120264 173120427 -3853713 - L1MA4A LINE L1 -433 5870 5708 774 42 0 0 chrX 173120427 173120518 -3853622 + L1PA5 LINE L1 6052 6147 -7 814 225 0 11 chrX 173120518 173120536 -3853604 - L1MA4A LINE L1 -595 5708 5691 25 0 0 68 chrX 173120847 173120891 -3853249 + AT_rich Low_complexity Low_complexity 1 41 0 431 264 0 0 chrX 173121408 173121514 -3852626 - MIR SINE MIR 0 262 157 337 284 64 0 chrX 173121514 173121623 -3852517 - MER69 DNA AcHobo -1 2525 2410 4021 137 12 58 chrX 173121630 173122394 -3851746 - L1PA16 LINE L1 -16 6150 5422 280 200 0 0 chrX 173122562 173122607 -3851533 - MER69 DNA AcHobo -129 48 4 253 160 120 0 chrX 173122641 173122691 -3851449 - MIR SINE MIR -172 90 35 618 326 89 51 chrX 173123315 173123809 -3850331 - L2 LINE L2 -473 2841 2329 1607 224 17 14 chrX 173123889 173124251 -3849889 + MLT1A1 LTR MaLR 3 365 0 2308 84 0 7 chrX 173124459 173124755 -3849385 - AluSc SINE Alu -15 294 1 1043 212 18 14 chrX 173125647 173125869 -3848271 - MER58A DNA MER1_type -1 223 1 23 0 0 0 chrX 173126186 173126209 -3847931 + AT_rich Low_complexity Low_complexity 1 23 0 10547 184 6 44 chrX 173126256 173127770 -3846370 - L1PA15 LINE L1 -21 6144 4574 388 70 35 0 chrX 173127770 173127827 -3846313 - AluSc SINE Alu 0 299 241 10547 184 6 44 chrX 173127827 173129711 -3844429 - L1PA15 LINE L1 -1591 4574 2827 1983 110 7 4 chrX 173130669 173130950 -3843190 + AluSp SINE Alu 1 282 -31 315 0 0 0 chrX 173130951 173130986 -3843154 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 235 109 55 73 chrX 173131130 173131185 -3842955 + MADE1 DNA Mariner 1 54 -26 243 88 0 0 chrX 173133102 173133136 -3841004 + (GA)n Simple_repeat Simple_repeat 2 35 0 520 213 25 0 chrX 173133696 173133818 -3840322 - L1MA9 LINE L1 -22 6290 6166 222 118 0 0 chrX 173133819 173133853 -3840287 + (TG)n Simple_repeat Simple_repeat 1 34 0 32 26 0 0 chrX 173133906 173133945 -3840195 + AT_rich Low_complexity Low_complexity 1 39 0 1533 271 25 28 chrX 173134000 173134509 -3839631 - L1MC4 LINE L1 -106 7936 7429 210 341 117 28 chrX 173135031 173135280 -3838860 + L2 LINE L2 2456 2726 -588 265 266 203 16 chrX 173135585 173135713 -3838427 + L2 LINE L2 3142 3293 -20 321 293 96 23 chrX 173136239 173136576 -3837564 - MLT1J LTR MaLR -1 428 66 205 155 35 0 chrX 173136703 173136761 -3837379 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 208 306 56 28 chrX 173137525 173137633 -3836507 - MIR SINE MIR -146 116 6 204 40 0 0 chrX 173137952 173137977 -3836163 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 824 0 10 0 chrX 173137977 173138073 -3836067 + (GGAAA)n Simple_repeat Simple_repeat 5 101 0 2160 179 28 7 chrX 173139315 173139752 -3834388 - L1MA8 LINE L1 -2 6289 5844 253 230 50 93 chrX 173140055 173140103 -3834037 - MARNA DNA Mariner -308 278 229 2031 101 14 0 chrX 173140103 173140498 -3833642 + AluSx SINE Alu 3 401 0 253 230 50 93 chrX 173140498 173140587 -3833553 - MARNA DNA Mariner -357 229 146 1302 153 37 4 chrX 173140893 173141135 -3833005 + L1MA9 LINE L1 5819 6068 -244 293 311 53 80 chrX 173141616 173141841 -3832299 + LTR16A LTR ERVL 225 443 -7 1810 143 93 24 chrX 173142066 173142450 -3831690 - L1MA8 LINE L1 -141 6150 5738 453 178 76 17 chrX 173142433 173142551 -3831589 + L1MA8 LINE L1 6162 6286 -5 * 1969 258 114 13 chrX 173143160 173143757 -3830383 - MLT2F LTR ERVL 0 663 7 331 250 177 0 chrX 173143757 173143853 -3830287 - MIR SINE MIR -53 209 97 1239 254 77 85 chrX 173143873 173143936 -3830204 + L1ME LINE L1 40 102 -5968 2108 134 0 3 chrX 173143936 173144241 -3829899 - AluSx SINE Alu -8 304 1 1239 254 77 85 chrX 173144241 173144256 -3829884 + L1ME LINE L1 102 116 -5954 3562 182 15 27 chrX 173144256 173144997 -3829143 + L1MA10 LINE L1 5600 6331 -3 201 39 0 0 chrX 173145005 173145031 -3829109 + (CAT)n Simple_repeat Simple_repeat 2 27 0 1239 254 77 85 chrX 173145031 173145750 -3828390 + L1ME LINE L1 123 840 -5230 976 294 143 18 chrX 173145770 173146212 -3827928 - L2 LINE L2 -399 2915 2419 370 249 64 98 chrX 173146216 173146301 -3827839 - MER45A DNA AcHobo -1407 174 95 2190 96 0 4 chrX 173146301 173146619 -3827521 + AluSg SINE Alu 2 318 0 370 249 64 98 chrX 173146619 173146705 -3827435 - MER45A DNA AcHobo -1486 95 8 28 29 0 0 chrX 173146805 173146840 -3827300 + AT_rich Low_complexity Low_complexity 1 35 0 1583 163 80 49 chrX 173147224 173147550 -3826590 - MER44D DNA MER2_type -1 608 3 26 0 0 0 chrX 173147893 173147919 -3826221 + AT_rich Low_complexity Low_complexity 1 26 0 307 295 125 14 chrX 173148201 173148482 -3825658 - L1MEd LINE L1 -3142 2987 2676 687 75 0 0 chrX 173148584 173148678 -3825462 + L1MA1 LINE L1 6205 6298 -4 245 61 0 61 chrX 173148989 173149007 -3825133 + (TA)n Simple_repeat Simple_repeat 1 19 -27 530 45 0 0 chrX 173149007 173149074 -3825066 - L1MA1 LINE L1 -15 6287 6221 245 61 0 61 chrX 173149074 173149104 -3825036 + (TA)n Simple_repeat Simple_repeat 19 46 0 210 91 0 0 chrX 173149103 173149136 -3825004 + (GA)n Simple_repeat Simple_repeat 2 34 0 * 2032 117 14 0 chrX 173149362 173149653 -3824487 - AluSx SINE Alu -14 298 4 296 316 156 45 chrX 173150013 173150371 -3823769 - L1MEd LINE L1 -5509 610 213 21 0 0 0 chrX 173150625 173150646 -3823494 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chrX 173151470 173151492 -3822648 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1118 190 80 23 chrX 173151528 173151791 -3822349 + AluJb SINE Alu 17 294 -18 315 345 106 45 chrX 173152058 173152455 -3821685 - L3 LINE CR1 -227 1350 930 649 345 208 2 chrX 173152761 173153199 -3820941 - L3 LINE CR1 -738 839 312 2046 203 62 78 chrX 173153804 173154430 -3819710 + MLT1E3 LTR MaLR 1 616 -8 1110 160 19 19 chrX 173154438 173154644 -3819496 + AluJo SINE Alu 87 292 -20 1192 226 95 67 chrX 173154680 173155131 -3819009 - L1ME3A LINE L1 -48 6122 5659 288 283 71 9 chrX 173155853 173155966 -3818174 + MIR SINE MIR 69 188 -74 481 139 0 206 chrX 173155983 173156148 -3817992 - MER3 DNA MER1_type -1 208 78 3417 75 0 0 chrX 173156226 173156680 -3817460 + L1PA8 LINE L1 5717 6170 -2 2710 117 147 34 chrX 173157228 173157699 -3816441 - MER1A DNA MER1_type 0 527 4 393 172 0 11 chrX 173158805 173158898 -3815242 + L1MA9 LINE L1 6213 6304 -8 477 225 69 92 chrX 173159370 173159543 -3814597 + MER5A DNA MER1_type 1 169 -20 3122 148 24 4 chrX 173159792 173160340 -3813800 + L1MB3 LINE L1 5591 6149 -34 1381 148 62 0 chrX 173160332 173160541 -3813599 + L1PB4 LINE L1 5569 5764 -392 * 234 0 0 0 chrX 173160541 173160567 -3813573 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chrX 173160566 173160599 -3813541 + (CA)n Simple_repeat Simple_repeat 2 34 0 1381 148 62 0 chrX 173160567 173160632 -3813508 + L1PB4 LINE L1 5764 5826 -330 915 97 0 24 chrX 173160632 173160756 -3813384 + AluSg/x SINE Alu 170 290 -20 1700 163 30 18 chrX 173160756 173161088 -3813052 + L1PB4 LINE L1 5814 6149 -7 32 26 0 0 chrX 173161117 173161156 -3812984 + AT_rich Low_complexity Low_complexity 1 39 0 2193 85 3 3 chrX 173161290 173161605 -3812535 + AluSq SINE Alu 1 315 0 705 280 71 38 chrX 173161652 173161891 -3812249 - MIR SINE MIR -15 247 1 354 339 124 29 chrX 173162405 173162566 -3811574 + MLT1H LTR MaLR 1 145 -404 2112 106 3 3 chrX 173162566 173162868 -3811272 - AluSg SINE Alu -8 302 1 354 339 124 29 chrX 173162868 173163013 -3811127 + MLT1H LTR MaLR 145 336 -213 1827 122 34 30 chrX 173163241 173163536 -3810604 - AluSx SINE Alu -16 296 1 5335 157 20 51 chrX 173163824 173164507 -3809633 + L1MA6 LINE L1 4931 5634 -666 1834 146 10 36 chrX 173164507 173164816 -3809324 + AluJo SINE Alu 3 303 -9 5335 157 20 51 chrX 173164816 173164998 -3809142 + L1MA6 LINE L1 5634 5820 -480 556 250 0 29 chrX 173164998 173165134 -3809006 + FLAM_C SINE Alu 2 133 0 5335 157 20 51 chrX 173165134 173165636 -3808504 + L1MA6 LINE L1 5820 6272 -28 2365 68 7 0 chrX 173165636 173165930 -3808210 - AluSp SINE Alu -17 296 1 5335 157 20 51 chrX 173165930 173165958 -3808182 + L1MA6 LINE L1 6272 6299 -1 221 250 29 0 chrX 173166697 173166765 -3807375 + (CA)n Simple_repeat Simple_repeat 1 70 0 606 334 98 6 chrX 173167560 173167877 -3806263 + MLT1J2 LTR MaLR 63 408 -42 237 176 59 59 chrX 173167972 173168040 -3806100 + MIR SINE MIR 154 221 -41 221 329 40 13 chrX 173168181 173168257 -3805883 - MIR3 SINE MIR -119 89 12 778 241 67 0 chrX 173168710 173168905 -3805235 + MER3 DNA MER1_type 1 208 -1 192 418 62 21 chrX 173169219 173169413 -3804727 + L2 LINE L2 1344 1545 -1769 2341 80 0 16 chrX 173169461 173169473 -3804667 - AluSc SINE Alu 0 309 298 210 37 0 0 chrX 173169473 173169500 -3804640 + (TG)n Simple_repeat Simple_repeat 2 28 0 2341 80 0 16 chrX 173169500 173169801 -3804339 - AluSc SINE Alu -11 298 1 189 74 0 0 chrX 173169923 173169950 -3804190 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chrX 173171358 173171381 -3802759 + AT_rich Low_complexity Low_complexity 1 23 0 218 160 40 13 chrX 173171696 173171771 -3802369 + (TA)n Simple_repeat Simple_repeat 2 78 0 278 208 28 0 chrX 173171793 173171937 -3802203 + (TA)n Simple_repeat Simple_repeat 1 148 0 234 190 52 0 chrX 173171942 173172000 -3802140 - L1MCa LINE L1 -4371 2055 1995 267 280 0 21 chrX 173172028 173172121 -3802019 - L1MC4 LINE L1 -1337 6705 6615 244 290 0 21 chrX 173172121 173172214 -3801926 + L1MC4 LINE L1 6613 6703 -1339 440 213 0 48 chrX 173172240 173172428 -3801712 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 258 276 46 0 chrX 173172433 173172520 -3801620 + L1MC4 LINE L1 6613 6703 -1339 232 333 0 0 chrX 173172508 173172595 -3801545 - L1MC4 LINE L1 -1339 6703 6617 * 230 320 39 0 chrX 173172732 173172810 -3801330 - MER91B DNA MER1_type -23 167 87 265 271 0 110 chrX 173172824 173172942 -3801198 - MER91B DNA MER1_type -60 130 26 1143 94 0 99 chrX 173173308 173173499 -3800641 + AluSc SINE Alu 138 309 0 225 65 0 0 chrX 173173513 173173544 -3800596 + (TC)n Simple_repeat Simple_repeat 2 32 0 2104 114 0 0 chrX 173174651 173174963 -3799177 - AluSx SINE Alu 0 313 2 1322 189 4 47 chrX 173175072 173175347 -3798793 + AluJo SINE Alu 3 265 -47 898 86 19 25 chrX 173175355 173175517 -3798623 + (TTTC)n Simple_repeat Simple_repeat 1 161 0 333 67 0 0 chrX 173175517 173175562 -3798578 - Alu SINE Alu -257 45 1 210 150 0 0 chrX 173175576 173175616 -3798524 + (TAA)n Simple_repeat Simple_repeat 3 42 0 5457 189 10 4 chrX 173175884 173176211 -3797929 - L1 LINE L1 -1404 4742 4419 216 0 0 0 chrX 173176211 173176235 -3797905 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5457 189 10 4 chrX 173176235 173177016 -3797124 - L1 LINE L1 -1727 4419 3627 * 6063 140 7 6 chrX 173177004 173178038 -3796102 + L1PB1 LINE L1 4748 5788 -363 525 32 0 0 chrX 173178038 173178101 -3796039 + (TA)n Simple_repeat Simple_repeat 1 63 0 6063 140 7 6 chrX 173178101 173178461 -3795679 + L1PB1 LINE L1 5788 6146 -5 30 27 0 0 chrX 173178461 173178498 -3795642 + AT_rich Low_complexity Low_complexity 1 37 0 262 284 0 0 chrX 173178821 173178888 -3795252 - MIR SINE MIR -86 176 110 272 343 37 37 chrX 173178931 173179065 -3795075 + MIR SINE MIR 14 147 -115 642 292 55 61 chrX 173180020 173180356 -3793784 - L2 LINE L2 -5 3308 2972 2241 94 7 0 chrX 173180356 173180653 -3793487 + AluSg SINE Alu 1 299 -11 642 292 55 61 chrX 173180653 173180764 -3793376 - L2 LINE L2 -341 2972 2862 2206 92 37 0 chrX 173180764 173181059 -3793081 + AluY SINE Alu 1 306 -5 642 292 55 61 chrX 173181059 173181195 -3792945 - L2 LINE L2 -451 2862 2670 6325 76 14 1 chrX 173181195 173182011 -3792129 - LTR12 LTR ERV1 0 826 1 642 292 55 61 chrX 173182011 173182044 -3792096 - L2 LINE L2 -643 2670 2638 1368 200 53 19 chrX 173182045 173182532 -3791608 + L1MB7 LINE L1 4965 5470 -700 1931 136 7 3 chrX 173182599 173183070 -3791070 + AluSx SINE Alu 1 472 0 1601 223 159 24 chrX 173183070 173183694 -3790446 + L1MB7 LINE L1 5476 6183 -1 965 249 123 30 chrX 173183695 173184092 -3790048 - L2 LINE L2 -664 2650 2217 4836 126 41 0 chrX 173184115 173184899 -3789241 - L1MA4A LINE L1 -12 6291 5476 1263 101 0 0 chrX 173184901 173185070 -3789070 - AluSc SINE Alu -10 299 131 2419 68 0 0 chrX 173185071 173185367 -3788773 - AluY SINE Alu -15 296 1 1610 125 22 8 chrX 173185367 173185750 -3788390 - L1MA4A LINE L1 -743 5403 5100 4750 107 20 4 chrX 173185759 173186499 -3787641 + L1MA4A LINE L1 5548 6299 -4 254 224 90 0 chrX 173188286 173188353 -3785787 + MIR SINE MIR 81 153 -109 299 331 105 22 chrX 173188501 173188660 -3785480 - MIR SINE MIR -58 150 21 8498 102 46 9 chrX 173188676 173189917 -3784223 - HSMAR1 DNA Mariner 0 1287 1 364 257 28 9 chrX 173190108 173190217 -3783923 + CT-rich Low_complexity Low_complexity 4 114 0 30 59 0 0 chrX 173190848 173190899 -3783241 + AT_rich Low_complexity Low_complexity 1 51 0 370 311 65 53 chrX 173190903 173191244 -3782896 - L1M4 LINE L1 -3654 2492 2148 27 49 0 0 chrX 173191247 173191288 -3782852 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chrX 173191368 173191389 -3782751 + AT_rich Low_complexity Low_complexity 1 21 0 1916 143 0 0 chrX 173191554 173191877 -3782263 - AluSx SINE Alu 0 328 6 265 180 0 0 chrX 173192022 173192072 -3782068 - L1PA16 LINE L1 -4 6162 6113 560 205 6 0 chrX 173192075 173192231 -3781909 + (TA)n Simple_repeat Simple_repeat 1 157 0 315 284 45 0 chrX 173192243 173192331 -3781809 + L1MC4 LINE L1 6614 6705 -1337 375 270 0 0 chrX 173192350 173192502 -3781638 + (TA)n Simple_repeat Simple_repeat 2 153 0 356 222 9 0 chrX 173192646 173192754 -3781386 + (TA)n Simple_repeat Simple_repeat 1 109 0 4726 162 40 15 chrX 173192756 173193896 -3780244 - L1PA16 LINE L1 -37 6129 4976 21 36 0 0 chrX 173194416 173194444 -3779696 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chrX 173195384 173195407 -3778733 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 944 214 16 0 chrX 173195762 173195949 -3778191 + MER58A DNA MER1_type 35 224 0 187 228 35 35 chrX 173196962 173197019 -3777121 - MER5B DNA MER1_type 0 178 122 634 128 55 0 chrX 173197024 173197133 -3777007 + L1PB3 LINE L1 6040 6154 0 183 379 0 15 chrX 173197295 173197361 -3776779 - L2 LINE L2 -171 3101 3037 442 258 31 47 chrX 173197466 173197594 -3776546 + MER5B DNA MER1_type 53 178 0 262 224 56 7 chrX 173198343 173198533 -3775607 + (TA)n Simple_repeat Simple_repeat 1 199 0 384 132 63 13 chrX 173198544 173198703 -3775437 + (TA)n Simple_repeat Simple_repeat 2 168 0 23 33 0 0 chrX 173198778 173198808 -3775332 + AT_rich Low_complexity Low_complexity 1 30 0 818 250 146 61 chrX 173198808 173198988 -3775152 + L1MC4 LINE L1 7527 7690 -352 2238 96 7 0 chrX 173198988 173199280 -3774860 - AluSq SINE Alu -15 298 5 818 250 146 61 chrX 173199280 173199571 -3774569 + L1MC4 LINE L1 7690 8038 -4 226 272 101 69 chrX 173199621 173199838 -3774302 - L2 LINE L2 -75 3238 3015 2954 65 0 0 chrX 173200447 173200831 -3773309 - L1PA6 LINE L1 -1 6153 5770 2526 71 0 0 chrX 173200831 173201149 -3772991 - L1PA6 LINE L1 0 6154 5832 22 0 0 0 chrX 173201530 173201552 -3772588 + AT_rich Low_complexity Low_complexity 1 22 0 800 245 36 51 chrX 173201815 173202068 -3772072 - MLT1A2 LTR MaLR 0 374 126 4967 30 78 0 chrX 173202070 173202709 -3771431 - L1PA3 LINE L1 -743 5403 4715 6221 26 0 0 chrX 173202709 173203473 -3770667 + L1PA3 LINE L1 5419 6186 0 874 167 35 0 chrX 173203473 173203617 -3770523 - MLT1A2 LTR MaLR -224 150 2 597 296 142 49 chrX 173203734 173204206 -3769934 + L2 LINE L2 2799 3313 0 32 26 0 0 chrX 173204979 173205018 -3769122 + AT_rich Low_complexity Low_complexity 1 39 0 2314 80 0 0 chrX 173205426 173205712 -3768428 - AluSc SINE Alu -23 286 1 198 0 0 0 chrX 173205719 173205741 -3768399 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chrX 173206542 173206565 -3767575 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chrX 173206605 173206630 -3767510 + AT_rich Low_complexity Low_complexity 1 25 0 2063 127 0 3 chrX 173206633 173206924 -3767216 - AluSx SINE Alu -22 290 1 1445 124 4 0 chrX 173207519 173207753 -3766387 + L1MA4 LINE L1 6065 6299 -1 760 284 77 11 chrX 173209350 173209611 -3764529 + L2 LINE L2 1782 2059 -1255 33 80 0 0 chrX 173209782 173209857 -3764283 + AT_rich Low_complexity Low_complexity 1 75 0 214 278 19 0 chrX 173210220 173210274 -3763866 - L2 LINE L2 -1 3271 3217 745 152 0 24 chrX 173210498 173210623 -3763517 - AluJb SINE Alu -6 306 185 1148 357 118 11 chrX 173210905 173211569 -3762571 + L2 LINE L2 75 809 -2505 296 289 94 16 chrX 173211600 173211728 -3762412 - MLT1G1 LTR MaLR 0 595 458 21 82 0 0 chrX 173212772 173212821 -3761319 + AT_rich Low_complexity Low_complexity 1 49 0 723 346 60 40 chrX 173212954 173213367 -3760773 - L2 LINE L2 -2 3311 2884 2346 156 46 5 chrX 173213367 173213784 -3760356 - MER61C LTR ERV1 0 434 1 723 346 60 40 chrX 173213784 173213971 -3760169 - L2 LINE L2 -429 2884 2702 280 128 21 0 chrX 173214354 173214401 -3759739 + Alu SINE Alu 1 48 -254 1148 133 0 0 chrX 173214402 173214582 -3759558 + AluSg/x SINE Alu 127 306 -4 930 266 105 91 chrX 173214583 173214786 -3759354 + HAL1 LINE L1 999 1198 -1309 1951 119 25 14 chrX 173214786 173215072 -3759068 + AluSc SINE Alu 1 289 -20 930 266 105 91 chrX 173215072 173215981 -3758159 + HAL1 LINE L1 1198 2127 -380 387 253 75 65 chrX 173216740 173216926 -3757214 + HAL1 LINE L1 1701 1888 -619 273 98 0 0 chrX 173217151 173217192 -3756948 + (TA)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chrX 173217193 173217221 -3756919 + (TG)n Simple_repeat Simple_repeat 1 28 0 941 262 111 43 chrX 173217232 173217602 -3756538 + MSTD LTR MaLR 2 396 0 2146 106 0 3 chrX 173217795 173218087 -3756053 - AluSg1 SINE Alu -18 291 1 2910 160 50 0 chrX 173218254 173218817 -3755323 - L1MC3 LINE L1 -1 7784 7194 4641 236 67 52 chrX 173218819 173218989 -3755151 - L1MCb LINE L1 -2342 4222 4056 3663 135 24 64 chrX 173218989 173219709 -3754431 + LTR8 LTR ERV1 1 691 0 4641 236 67 52 chrX 173219709 173219987 -3754153 - L1MCb LINE L1 -2508 4056 3784 1936 109 40 0 chrX 173219987 173220285 -3753855 - AluSc SINE Alu 0 309 1 4641 236 67 52 chrX 173220285 173223991 -3750149 - L1MCb LINE L1 -2780 3784 8 2271 69 21 3 chrX 173224770 173225060 -3749080 - AluY SINE Alu -16 295 1 318 364 17 51 chrX 173226423 173226599 -3747541 + L1ME LINE L1 272 441 -5629 726 137 7 43 chrX 173226835 173226974 -3747166 + AluJo SINE Alu 1 134 -178 241 329 122 53 chrX 173227532 173227778 -3746362 + L2 LINE L2 2537 2799 -515 251 122 0 20 chrX 173227857 173227906 -3746234 + L1ME LINE L1 557 604 -4958 2987 161 14 55 chrX 173228092 173228658 -3745482 + MLT2B3 LTR ERVL 1 543 -11 1998 209 152 73 chrX 173229329 173230274 -3743866 + LTR28 LTR ERV1 1 1020 0 207 214 0 0 chrX 173230559 173230601 -3743539 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 497 332 149 26 chrX 173230603 173231132 -3743008 - L2 LINE L2 0 3313 2707 1504 247 170 30 chrX 173231148 173231771 -3742369 - L1ME3A LINE L1 -17 6153 5444 25 31 0 0 chrX 173231778 173231810 -3742330 + AT_rich Low_complexity Low_complexity 1 32 0 1652 254 60 48 chrX 173231821 173232439 -3741701 - L1ME1 LINE L1 -102 6064 5440 * 1835 244 87 31 chrX 173232436 173232550 -3741590 - L1ME1 LINE L1 -957 5189 5083 2292 87 0 7 chrX 173232550 173232849 -3741291 + AluSg SINE Alu 1 297 -13 1835 244 87 31 chrX 173232849 173233185 -3740955 - L1ME1 LINE L1 -1063 5083 4767 2216 111 0 9 chrX 173233185 173233500 -3740640 + AluSx SINE Alu 1 312 0 1835 244 87 31 chrX 173233500 173233540 -3740600 - L1ME1 LINE L1 -1379 4767 4731 333 143 10 92 chrX 173233540 173233638 -3740502 - L1PA11 LINE L1 0 6174 6085 1835 244 87 31 chrX 173233638 173233916 -3740224 - L1ME1 LINE L1 -1415 4731 4376 1934 150 20 3 chrX 173233916 173234216 -3739924 + AluSx SINE Alu 1 305 -7 582 238 11 21 chrX 173234273 173234462 -3739678 - L1ME1 LINE L1 -2097 4049 3863 * 1077 225 43 130 chrX 173234451 173235260 -3738880 - L1ME1 LINE L1 -2771 3375 2637 2110 126 0 10 chrX 173235265 173235574 -3738566 - AluSq SINE Alu -7 306 1 697 317 21 21 chrX 173235609 173236042 -3738098 - L1 LINE L1 -2220 3926 3478 443 270 44 28 chrX 173236042 173236277 -3737863 + L1ME LINE L1 5267 5508 -656 2310 96 0 7 chrX 173236277 173236579 -3737561 + AluY SINE Alu 1 300 -11 443 270 44 28 chrX 173236579 173236595 -3737545 + L1ME LINE L1 5508 5522 -642 499 255 10 21 chrX 173236608 173236800 -3737340 + L1ME3A LINE L1 5343 5532 -630 1911 221 64 51 chrX 173236817 173237409 -3736731 - LTR9 LTR ERV1 0 612 13 358 278 160 36 chrX 173237414 173237720 -3736420 + L1ME3A LINE L1 5565 5908 -262 22 0 0 0 chrX 173238061 173238083 -3736057 + AT_rich Low_complexity Low_complexity 1 22 0 306 138 0 0 chrX 173238459 173238517 -3735623 + (CA)n Simple_repeat Simple_repeat 2 59 0 2076 123 0 25 chrX 173238805 173239122 -3735018 - AluY SINE Alu -2 309 1 192 318 0 0 chrX 173239254 173239298 -3734842 + L2 LINE L2 1834 1877 -1437 202 377 55 20 chrX 173239359 173239505 -3734635 + L2 LINE L2 2384 2534 -780 786 209 114 20 chrX 173239506 173239707 -3734433 - MLT1B LTR MaLR 0 379 155 3381 162 15 2 chrX 173239706 173240300 -3733840 - L1PB4 LINE L1 0 6156 5555 1627 150 17 19 chrX 173240302 173240731 -3733409 + L1PB4 LINE L1 5102 5536 -620 747 215 25 6 chrX 173240736 173240894 -3733246 - MLT1B LTR MaLR -213 161 1 21 36 0 0 chrX 173241198 173241226 -3732914 + AT_rich Low_complexity Low_complexity 1 28 0 909 204 18 0 chrX 173241244 173241411 -3732729 - FAM SINE Alu -4 45 1 1853 141 7 0 chrX 173241518 173241822 -3732318 - L1MB1 LINE L1 0 6168 5863 2965 151 20 2 chrX 173241822 173242327 -3731813 + L1MB1 LINE L1 5345 5858 -310 223 366 56 49 chrX 173242340 173242431 -3731709 + L2 LINE L2 2694 2783 -530 2035 80 6 96 chrX 173242431 173242755 -3731385 - AluSq SINE Alu -18 295 1 223 366 56 49 chrX 173242755 173243028 -3731112 + L2 LINE L2 2783 3057 -256 340 336 119 0 chrX 173243190 173243324 -3730816 + L2 LINE L2 3162 3311 -2 250 395 25 15 chrX 173243342 173243542 -3730598 + L2 LINE L2 2376 2577 -737 648 180 12 72 chrX 173244064 173244191 -3729949 - L1MA10 LINE L1 0 6334 6217 2097 113 0 0 chrX 173244191 173244499 -3729641 + AluSx SINE Alu 1 308 0 648 180 12 72 chrX 173244499 173244537 -3729603 - L1MA10 LINE L1 -117 6217 6178 422 266 43 29 chrX 173245144 173245283 -3728857 - MLT1J2 LTR MaLR -58 392 252 272 300 77 31 chrX 173245363 173245493 -3728647 - MLT1J2 LTR MaLR -314 136 1 2189 196 52 17 chrX 173245794 173246029 -3728111 + LOR1a LTR ERV1 1 226 -271 2190 75 37 7 chrX 173246029 173246323 -3727817 - AluY SINE Alu -8 303 1 2189 196 52 17 chrX 173246323 173246567 -3727573 + LOR1a LTR ERV1 226 497 0 1694 174 22 0 chrX 173246771 173247046 -3727094 + AluJo SINE Alu 1 281 -31 512 123 0 0 chrX 173247181 173247254 -3726886 - MER57B LTR ERV1 -360 74 2 2027 175 29 42 chrX 173247254 173247713 -3726427 - L1M2 LINE L1 -619 5672 5210 2074 124 0 3 chrX 173247713 173248033 -3726107 + AluSx SINE Alu 1 319 0 2027 175 29 42 chrX 173248033 173248294 -3725846 - L1M2 LINE L1 -1081 5210 4947 390 100 86 0 chrX 173248378 173248448 -3725692 - L1PA13 LINE L1 -4 6159 6084 10051 138 26 11 chrX 173248548 173250145 -3723995 - L1P3 LINE L1 -4836 1625 5 451 173 0 0 chrX 173250183 173250264 -3723876 - FLAM_A SINE Alu -32 110 30 3381 147 11 0 chrX 173250364 173250893 -3723247 - L1PA15 LINE L1 -296 5869 5335 * 8630 66 1 1 chrX 173250886 173252030 -3722110 - L1P LINE L1 -3091 3055 1912 21 36 0 0 chrX 173252787 173252815 -3721325 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chrX 173253169 173253205 -3720935 + AT_rich Low_complexity Low_complexity 1 36 0 233 237 0 17 chrX 173253312 173253371 -3720769 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2044 99 0 11 chrX 173253405 173253713 -3720427 + AluY SINE Alu 1 305 0 1907 156 3 7 chrX 173253960 173254267 -3719873 - AluSq SINE Alu -7 306 1 24 53 0 0 chrX 173254988 173255026 -3719114 + AT_rich Low_complexity Low_complexity 1 38 0 1649 203 116 91 chrX 173256122 173256859 -3717281 + LTR1B LTR ERV1 1 745 -81 374 375 7 0 chrX 173256958 173257169 -3716971 - HERVL LTR ERVL -511 5143 4985 231 235 0 0 chrX 173257189 173257240 -3716900 + T-rich Low_complexity Low_complexity 1 51 0 546 358 50 10 chrX 173257590 173257892 -3716248 - HERVL LTR ERVL -1904 3860 3547 403 154 0 22 chrX 173258064 173258155 -3715985 + (TA)n Simple_repeat Simple_repeat 1 89 0 1666 224 81 146 chrX 173258825 173259810 -3714330 + LTR28 LTR ERV1 1 1020 0 619 323 67 50 chrX 173259833 173260397 -3713743 - HERVL LTR ERVL -3297 2467 1894 460 319 103 28 chrX 173260441 173260723 -3713417 - LTR16A1 LTR ERVL -8 449 147 2528 166 18 11 chrX 173260905 173261363 -3712777 + LOR1b LTR ERV1 1 461 0 1054 45 0 0 chrX 173261470 173261603 -3712537 + L1PA8 LINE L1 6039 6171 -1 207 0 0 0 chrX 173261620 173261643 -3712497 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 392 345 15 15 chrX 173262431 173262634 -3711506 + MLT1L LTR MaLR 411 613 -2 29 0 0 0 chrX 173263210 173263239 -3710901 + AT_rich Low_complexity Low_complexity 1 29 0 41 0 0 0 chrX 173263372 173263413 -3710727 + AT_rich Low_complexity Low_complexity 1 41 0 1094 129 53 12 chrX 173263690 173263861 -3710279 + AluSg/x SINE Alu 119 296 -14 519 239 6 43 chrX 173265140 173265303 -3708837 - L1ME LINE L1 -410 5754 5598 2127 106 0 16 chrX 173265303 173265606 -3708534 - AluSc SINE Alu -11 298 1 299 205 62 45 chrX 173265816 173265928 -3708212 + L2 LINE L2 3197 3310 -3 2303 77 3 3 chrX 173266127 173266426 -3707714 - AluSc SINE Alu -10 299 1 22 35 0 0 chrX 173267341 173267370 -3706770 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chrX 173267534 173267590 -3706550 + AT_rich Low_complexity Low_complexity 1 56 0 1852 128 0 0 chrX 173267879 173268160 -3705980 - AluSq SINE Alu 0 316 36 347 236 28 0 chrX 173268463 173268535 -3705605 - MER2 DNA MER2_type -1 344 271 573 200 20 0 chrX 173268608 173268708 -3705432 - MER2 DNA MER2_type -241 104 3 194 147 59 0 chrX 173268744 173268812 -3705328 + (TA)n Simple_repeat Simple_repeat 1 72 0 2159 114 10 3 chrX 173269017 173269314 -3704826 - AluSq SINE Alu -14 299 1 190 277 79 30 chrX 173269833 173269934 -3704206 + MIR SINE MIR 96 201 -61 2225 94 3 3 chrX 173271273 173271570 -3702570 + AluSx SINE Alu 1 297 -15 4003 158 69 11 chrX 173272163 173272944 -3701196 - LTR1B LTR ERV1 0 826 1 2294 82 23 3 chrX 173273431 173273736 -3700404 - AluSx SINE Alu -1 311 1 216 163 0 0 chrX 173274192 173274235 -3699905 + (TA)n Simple_repeat Simple_repeat 1 43 0 309 118 0 0 chrX 173274256 173274307 -3699833 + (GA)n Simple_repeat Simple_repeat 1 51 0 198 0 0 0 chrX 173274423 173274445 -3699695 + (TA)n Simple_repeat Simple_repeat 2 23 0 2243 103 3 3 chrX 173276222 173276524 -3697616 + AluSp SINE Alu 1 302 -11 439 338 0 25 chrX 173276549 173276750 -3697390 - LTR67 LTR ERVL -2 555 360 812 156 0 0 chrX 173277072 173277194 -3696946 - FLAM_C SINE Alu -9 134 13 22 35 0 0 chrX 173277981 173278010 -3696130 + AT_rich Low_complexity Low_complexity 1 29 0 208 264 0 0 chrX 173278050 173278103 -3696037 + (TA)n Simple_repeat Simple_repeat 1 53 0 1762 180 0 16 chrX 173278231 173278537 -3695603 + AluJo SINE Alu 1 301 -11 1086 192 28 9 chrX 173279257 173279471 -3694669 - AluJo SINE Alu -90 222 5 1319 67 112 0 chrX 173280097 173280275 -3693865 - AluSg/x SINE Alu -22 290 93 255 200 0 0 chrX 173280478 173280518 -3693622 - L2 LINE L2 -35 3237 3198 463 307 37 17 chrX 173281622 173281670 -3692470 - MIR3 SINE MIR -5 257 211 2143 108 14 0 chrX 173281670 173281958 -3692182 - AluSg SINE Alu -18 292 1 463 307 37 17 chrX 173281958 173282157 -3691983 - MIR3 SINE MIR -51 211 5 1831 186 0 0 chrX 173282260 173282551 -3691589 + AluJb SINE Alu 1 291 -21 314 123 18 0 chrX 173282551 173282608 -3691532 + (CA)n Simple_repeat Simple_repeat 1 58 0 183 338 0 42 chrX 173282758 173282829 -3691311 + MIR3 SINE MIR 6 73 -135 1989 138 10 0 chrX 173282939 173283259 -3690881 - AluSx SINE Alu 0 312 1 21 0 0 0 chrX 173283259 173283280 -3690860 + AT_rich Low_complexity Low_complexity 1 21 0 2045 116 3 31 chrX 173284209 173284527 -3689613 - AluSx SINE Alu -3 309 1 1636 56 19 0 chrX 173284543 173284756 -3689384 - L1PA12 LINE L1 -1 6167 5951 268 331 51 46 chrX 173285163 173285338 -3688802 - MIR3 SINE MIR -3 205 30 636 279 48 85 chrX 173285512 173285889 -3688251 + L2 LINE L2 1584 1946 -1368 423 308 93 50 chrX 173285978 173286257 -3687883 - MLT1H LTR MaLR -257 292 2 2691 254 65 50 chrX 173286258 173286575 -3687565 + L2 LINE L2 1893 2204 -1110 408 130 78 0 chrX 173286575 173286652 -3687488 + L1MB2 LINE L1 6087 6169 -2 2691 254 65 50 chrX 173286652 173287294 -3686846 + L2 LINE L2 2204 2866 -448 2227 166 75 15 chrX 173287314 173287783 -3686357 + LOR1a LTR ERV1 1 497 0 262 314 133 0 chrX 173287837 173287942 -3686198 - MER91C DNA MER1_type 0 140 22 822 291 109 36 chrX 173287973 173288542 -3685598 - L2 LINE L2 -148 3165 2544 270 0 0 0 chrX 173288618 173288648 -3685492 + (TG)n Simple_repeat Simple_repeat 2 31 0 238 312 39 26 chrX 173288942 173289173 -3684967 - L1M4 LINE L1 -2169 3977 3744 567 225 11 6 chrX 173289215 173289245 -3684895 + (TA)n Simple_repeat Simple_repeat 2 30 -150 1960 103 50 0 chrX 173289245 173289527 -3684613 - AluSg SINE Alu -14 296 1 567 225 11 6 chrX 173289527 173289674 -3684466 + (TA)n Simple_repeat Simple_repeat 30 180 0 27 62 0 0 chrX 173289957 173290005 -3684135 + AT_rich Low_complexity Low_complexity 1 48 0 1560 185 45 11 chrX 173290005 173290292 -3683848 - AluJo SINE Alu -15 297 1 28 0 0 0 chrX 173290413 173290441 -3683699 + AT_rich Low_complexity Low_complexity 1 28 0 378 159 34 0 chrX 173290735 173290823 -3683317 + (TA)n Simple_repeat Simple_repeat 2 92 0 187 100 25 25 chrX 173290901 173290941 -3683199 + (TA)n Simple_repeat Simple_repeat 1 40 0 * 240 86 0 0 chrX 173290940 173290975 -3683165 + (GA)n Simple_repeat Simple_repeat 2 36 0 605 242 33 22 chrX 173291442 173291624 -3682516 + MLT1J LTR MaLR 1 184 -327 26 50 0 0 chrX 173291773 173291813 -3682327 + AT_rich Low_complexity Low_complexity 1 40 0 305 238 12 12 chrX 173291813 173291893 -3682247 + MER116 DNA Mariner 1 80 0 22 56 0 19 chrX 173292050 173292070 -3682070 + AT_rich Low_complexity Low_complexity 1 20 -33 2213 96 3 0 chrX 173292070 173292352 -3681788 + AluSc SINE Alu 1 283 -26 22 56 0 19 chrX 173292352 173292385 -3681755 + AT_rich Low_complexity Low_complexity 20 53 0 228 135 0 27 chrX 173292408 173292445 -3681695 + HAL1b LINE L1 857 892 -456 2531 158 24 5 chrX 173292467 173292885 -3681255 + MSTB LTR MaLR 1 426 0 584 257 6 28 chrX 173292944 173293123 -3681017 - HsTC2 DNA Tc2 -283 1615 1441 22 56 0 0 chrX 173293131 173293167 -3680973 + AT_rich Low_complexity Low_complexity 1 36 0 7737 19 0 0 chrX 173293168 173294599 -3679541 - L1PA2 LINE L1 -2 6153 4724 5048 35 2 0 chrX 173294599 173295236 -3678904 + L1P LINE L1 2828 3465 -2681 22 0 0 0 chrX 173295236 173295258 -3678882 + AT_rich Low_complexity Low_complexity 1 22 0 1139 223 160 5 chrX 173296200 173296348 -3677792 + Charlie4a DNA MER1_type 26 150 -1811 2410 70 6 10 chrX 173296348 173296662 -3677478 - AluSp SINE Alu 0 313 1 1139 223 160 5 chrX 173296662 173296931 -3677209 + Charlie4a DNA MER1_type 150 508 0 599 150 0 9 chrX 173298995 173299108 -3675032 + GA-rich Low_complexity Low_complexity 4 115 0 808 138 40 6 chrX 173299138 173299312 -3674828 + GA-rich Low_complexity Low_complexity 1 180 0 4975 159 49 36 chrX 173299460 173300513 -3673627 + MER11C LTR ERVK 1 1067 -4 288 151 23 12 chrX 173301344 173301430 -3672710 + (TA)n Simple_repeat Simple_repeat 2 88 0 1771 124 3 95 chrX 173301684 173302034 -3672106 - AluSp SINE Alu 0 321 1 313 281 0 0 chrX 173302085 173302149 -3671991 - MIR SINE MIR -62 146 83 21 36 0 0 chrX 173302371 173302399 -3671741 + AT_rich Low_complexity Low_complexity 1 28 0 333 0 0 0 chrX 173302610 173302647 -3671493 + (CA)n Simple_repeat Simple_repeat 2 38 0 2163 82 36 0 chrX 173303249 173303528 -3670612 - AluSc SINE Alu -20 289 1 459 0 0 0 chrX 173303578 173303629 -3670511 + (TTTTG)n Simple_repeat Simple_repeat 3 53 0 271 329 82 41 chrX 173304377 173304440 -3669700 - MIR SINE MIR -44 218 159 3053 153 2 4 chrX 173304440 173304938 -3669202 + LOR1a LTR ERV1 1 497 0 271 329 82 41 chrX 173304938 173305044 -3669096 - MIR SINE MIR -103 159 42 255 320 109 26 chrX 173305076 173305232 -3668908 - MIR3 SINE MIR -21 187 19 24 0 0 0 chrX 173305300 173305324 -3668816 + AT_rich Low_complexity Low_complexity 1 24 0 249 211 0 0 chrX 173305449 173305501 -3668639 - L1MC4 LINE L1 -1339 6703 6652 26 64 0 0 chrX 173306419 173306466 -3667674 + AT_rich Low_complexity Low_complexity 1 47 0 322 151 0 0 chrX 173307858 173307911 -3666229 + AluJ/FLAM SINE Alu 37 89 -213 535 188 10 0 chrX 173308327 173308428 -3665712 + MER33 DNA MER1_type 8 109 -215 21 36 0 0 chrX 173308428 173308456 -3665684 + AT_rich Low_complexity Low_complexity 1 28 0 637 222 8 0 chrX 173308456 173308582 -3665558 - FLAM_C SINE Alu -16 127 1 390 153 74 163 chrX 173308600 173308739 -3665401 + MER33 DNA MER1_type 129 244 -2341 2290 92 3 0 chrX 173308739 173309032 -3665108 - AluY SINE Alu -17 294 1 390 153 74 163 chrX 173309032 173309107 -3665033 + MER33 DNA MER1_type 244 324 0 1189 156 22 53 chrX 173309115 173309340 -3664800 - MER20 DNA MER1_type 0 219 2 31 88 0 0 chrX 173309603 173309683 -3664457 + AT_rich Low_complexity Low_complexity 1 80 0 2068 141 111 35 chrX 173309724 173310080 -3664060 + MSTA LTR MaLR 1 392 -36 1806 170 3 13 chrX 173310080 173310380 -3663760 - AluJb SINE Alu -15 297 1 2068 141 111 35 chrX 173310380 173310421 -3663719 + MSTA LTR MaLR 392 428 0 297 0 0 0 chrX 173311640 173311673 -3662467 + (A)n Simple_repeat Simple_repeat 1 33 0 3809 125 52 83 chrX 173311903 173312713 -3661427 - LTR1 LTR ERV1 0 785 1 227 152 22 0 chrX 173312949 173312995 -3661145 + CT-rich Low_complexity Low_complexity 3 49 0 1944 145 12 12 chrX 173313528 173313872 -3660268 + LOR1a LTR ERV1 3 346 -151 2096 136 42 33 chrX 173313933 173314294 -3659846 - THE1B LTR MaLR 0 364 1 10664 104 38 11 chrX 173314294 173315816 -3658324 - THE1B-int LTR MaLR 0 1580 19 2305 97 39 31 chrX 173315821 173316181 -3657959 - THE1B LTR MaLR -1 363 1 794 161 0 8 chrX 173316184 173316314 -3657826 + LOR1b LTR ERV1 333 461 0 21 36 0 0 chrX 173316957 173316985 -3657155 + AT_rich Low_complexity Low_complexity 1 28 0 929 282 5 0 chrX 173317059 173317272 -3656868 - MER58A DNA MER1_type -10 214 1 340 204 0 82 chrX 173318193 173318291 -3655849 + L1MC4 LINE L1 6614 6703 -1339 238 264 18 0 chrX 173318403 173318513 -3655627 + Charlie7 DNA MER1_type 2421 2532 -80 32 0 0 0 chrX 173318513 173318545 -3655595 + AT_rich Low_complexity Low_complexity 1 32 0 1229 191 110 80 chrX 173318643 173319086 -3655054 + MER66A LTR ERV1 97 455 -23 277 346 49 27 chrX 173321198 173321461 -3652679 - L1MC/D LINE L1 -2007 5801 5533 830 224 0 0 chrX 173322569 173322725 -3651415 - FRAM SINE Alu -23 153 1 24 77 0 0 chrX 173322892 173322944 -3651196 + AT_rich Low_complexity Low_complexity 1 52 0 251 345 44 9 chrX 173323292 173323405 -3650735 - L2 LINE L2 0 3313 3197 302 214 0 0 chrX 173323890 173323903 -3650237 + MER3 DNA MER1_type 35 47 -162 886 192 40 30 chrX 173323903 173324101 -3650039 - MER3 DNA MER1_type 0 209 10 1837 128 0 35 chrX 173324133 173324442 -3649698 - AluSg SINE Alu 0 299 1 1676 151 0 83 chrX 173324442 173324767 -3649373 - AluJo SINE Alu -14 298 1 419 306 55 67 chrX 173326788 173326905 -3647235 - MIR SINE MIR 0 262 145 2272 71 0 3 chrX 173326905 173327201 -3646939 + AluY SINE Alu 1 295 -16 419 306 55 67 chrX 173327201 173327338 -3646802 - MIR SINE MIR -117 145 11 1011 266 97 50 chrX 173327753 173328174 -3645966 + L2 LINE L2 2873 3313 0 1496 230 82 107 chrX 173328400 173329359 -3644781 + LTR1B LTR ERV1 1 1018 -2 1731 336 51 24 chrX 173329419 173329878 -3644262 + ERVL LTR ERVL 1791 2236 -3528 1618 200 7 3 chrX 173329878 173330163 -3643977 + AluJo SINE Alu 1 286 -26 1731 336 51 24 chrX 173330163 173330695 -3643445 + ERVL LTR ERVL 2236 2809 -2955 10524 39 0 1 chrX 173330815 173332160 -3641980 + L1P LINE L1 3705 5047 -1099 1894 151 3 53 chrX 173332259 173332616 -3641524 + L1PB4 LINE L1 5811 6149 -7 2369 78 3 0 chrX 173332631 173332924 -3641216 - AluSp SINE Alu -19 294 1 306 412 110 94 chrX 173333464 173333838 -3640302 - L2 LINE L2 0 3313 2934 1253 164 19 0 chrX 173333912 173334126 -3640014 - MER20 DNA MER1_type -1 218 1 438 324 69 33 chrX 173334926 173335201 -3638939 - L1ME LINE L1 -627 5539 5255 1721 192 38 43 chrX 173336401 173336792 -3637348 - MLT1B LTR MaLR 0 390 2 390 209 47 0 chrX 173336851 173336980 -3637160 - L1ME LINE L1 -913 5233 5099 508 205 0 54 chrX 173337009 173337121 -3637019 - Tigger3(Golem) DNA MER2_type 0 3038 2933 303 49 0 0 chrX 173337121 173337162 -3636978 + (TA)n Simple_repeat Simple_repeat 2 42 0 305 286 0 0 chrX 173337274 173337351 -3636789 - Tigger3(Golem) DNA MER2_type -2951 78 2 238 255 0 0 chrX 173337971 173338022 -3636118 + MER77 LTR ERV1 359 409 -196 21 57 0 0 chrX 173338696 173338731 -3635409 + AT_rich Low_complexity Low_complexity 1 35 0 32 26 0 0 chrX 173339160 173339199 -3634941 + AT_rich Low_complexity Low_complexity 1 39 0 3129 130 12 2 chrX 173339317 173339826 -3634314 + L1PB4 LINE L1 5641 6154 -2 840 233 0 31 chrX 173339891 173340084 -3634056 + MER5A DNA MER1_type 1 187 -2 6048 123 90 77 chrX 173341014 173343171 -3630969 + pTR5 LTR ERV1 724 2433 -5 256 329 148 24 chrX 173343172 173343382 -3630758 + MIR SINE MIR 22 257 -5 278 274 21 11 chrX 173343441 173343536 -3630604 + MER5A DNA MER1_type 1 96 -93 404 255 92 26 chrX 173343679 173343832 -3630308 + MER5A DNA MER1_type 3 165 -24 228 381 28 17 chrX 173343864 173344040 -3630100 - MER5B DNA MER1_type 0 178 1 2373 64 7 14 chrX 173344494 173344790 -3629350 - AluY SINE Alu -17 294 1 1467 269 72 44 chrX 173345134 173345707 -3628433 + MER77 LTR ERV1 1 589 -16 281 347 75 25 chrX 173346634 173346833 -3627307 + MIR SINE MIR 21 229 -33 290 278 102 19 chrX 173346920 173347028 -3627112 + MER5A DNA MER1_type 1 117 -72 22 0 0 0 chrX 173347052 173347074 -3627066 + AT_rich Low_complexity Low_complexity 1 22 0 469 237 81 58 chrX 173347154 173347327 -3626813 + MER5A DNA MER1_type 7 183 -6 295 354 29 11 chrX 173347342 173347517 -3626623 - MER5B DNA MER1_type 0 178 1 701 112 4 63 chrX 173348502 173349016 -3625124 + (TA)n Simple_repeat Simple_repeat 1 483 0 220 336 203 0 chrX 173349454 173349671 -3624469 - MIR SINE MIR -1 261 1 879 243 112 8 chrX 173350313 173350564 -3623576 + MLT1F LTR MaLR 1 277 -265 683 203 14 7 chrX 173350567 173350715 -3623425 + MLT1F LTR MaLR 394 542 0 281 260 63 19 chrX 173351026 173351168 -3622972 - MLT1J1 LTR MaLR -301 149 2 318 280 95 30 chrX 173351601 173351769 -3622371 - MLT1H LTR MaLR -230 319 141 759 160 104 0 chrX 173352160 173352304 -3621836 + FRAM SINE Alu 1 159 -17 1812 125 3 66 chrX 173352381 173352686 -3621454 - AluJb SINE Alu -20 292 7 190 396 81 0 chrX 173352809 173352920 -3621220 - L2 LINE L2 -17 3255 3136 614 358 58 40 chrX 173353126 173353818 -3620322 - L2 LINE L2 -757 2557 1854 301 261 168 17 chrX 173354296 173354415 -3619725 + HAL1 LINE L1 1490 1626 -881 1706 241 39 0 chrX 173357826 173358315 -3615825 + L1ME2 LINE L1 5419 5926 -238 606 269 23 42 chrX 173358337 173358597 -3615543 + L1ME2 LINE L1 5896 6150 -14 333 235 61 108 chrX 173358647 173358860 -3615280 + L1MC4 LINE L1 7836 8038 -4 3857 129 28 28 chrX 173358972 173359608 -3614532 - L1PA15 LINE L1 0 6165 5530 4526 151 1 43 chrX 173359937 173360770 -3613370 + MER52A LTR ERV1 958 1755 0 23 54 0 0 chrX 173361159 173361196 -3612944 + AT_rich Low_complexity Low_complexity 1 37 0 1185 107 0 0 chrX 173361244 173361403 -3612737 + AluSg/x SINE Alu 146 304 -6 241 256 23 12 chrX 173361820 173361906 -3612234 + CT-rich Low_complexity Low_complexity 5 91 0 272 27 27 0 chrX 173362315 173362352 -3611788 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7544 24 21 0 chrX 173362352 173363277 -3610863 - L1PA3 LINE L1 -16 6139 5211 13168 31 0 0 chrX 173363277 173364928 -3609212 + L1P LINE L1 3266 4916 -1230 1471 274 49 51 chrX 173365105 173365696 -3608444 + MER77 LTR ERV1 8 597 -8 342 0 0 0 chrX 173366117 173366155 -3607985 + (TC)n Simple_repeat Simple_repeat 1 38 0 209 391 31 8 chrX 173366669 173366797 -3607343 + MIR SINE MIR 18 148 -114 311 258 11 43 chrX 173366953 173367046 -3607094 + MER5A DNA MER1_type 2 91 -98 207 0 0 0 chrX 173367086 173367109 -3607031 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 222 250 19 96 chrX 173367164 173367268 -3606872 + MER5A DNA MER1_type 54 149 -40 1688 35 0 0 chrX 173368112 173368310 -3605830 + L1PA3 LINE L1 5955 6152 -3 27 29 0 0 chrX 173368537 173368571 -3605569 + AT_rich Low_complexity Low_complexity 1 34 0 1502 289 53 34 chrX 173368660 173369228 -3604912 + MER77 LTR ERV1 25 603 -2 189 359 101 15 chrX 173370153 173370351 -3603789 + MIR SINE MIR 15 229 -33 410 232 85 67 chrX 173370685 173370849 -3603291 + MER5A DNA MER1_type 17 183 -6 189 0 0 0 chrX 173370961 173370982 -3603158 + (GA)n Simple_repeat Simple_repeat 1 21 0 1222 182 78 31 chrX 173370982 173371240 -3602900 - AluJb SINE Alu -39 273 4 1471 271 57 48 chrX 173372107 173372705 -3601435 + MER77 LTR ERV1 1 603 -2 2458 138 62 5 chrX 173373091 173373496 -3600644 - MSTA LTR MaLR 0 428 1 211 206 39 98 chrX 173374336 173374438 -3599702 + MER5A DNA MER1_type 1 96 -93 283 283 90 41 chrX 173374570 173374715 -3599425 + MER5A DNA MER1_type 1 152 -37 2140 119 3 0 chrX 173374822 173375117 -3599023 + AluSx SINE Alu 7 302 -10 2236 106 33 0 chrX 173375137 173375438 -3598702 - AluSp SINE Alu -2 311 1 22 0 0 0 chrX 173375755 173375777 -3598363 + AT_rich Low_complexity Low_complexity 1 22 0 1513 70 0 11 chrX 173375787 173375973 -3598167 - AluSg/x SINE Alu -17 295 112 1578 175 104 123 chrX 173375977 173376359 -3597781 + MER77 LTR ERV1 152 525 -80 922 198 0 6 chrX 173376359 173376521 -3597619 - FRAM SINE Alu -5 161 1 1578 175 104 123 chrX 173376521 173376601 -3597539 + MER77 LTR ERV1 525 605 0 646 292 44 4 chrX 173377311 173377561 -3596579 + MIR SINE MIR 3 262 0 661 345 40 45 chrX 173377601 173378132 -3596008 + L2 LINE L2 1996 2523 -791 27 29 0 0 chrX 173378640 173378674 -3595466 + AT_rich Low_complexity Low_complexity 1 34 0 218 377 92 18 chrX 173379264 173379492 -3594648 + L2 LINE L2 2811 3055 -217 2167 115 0 0 chrX 173379781 173380088 -3594052 - AluSx SINE Alu 0 307 1 22 0 0 0 chrX 173380810 173380832 -3593308 + AT_rich Low_complexity Low_complexity 1 22 0 197 320 53 13 chrX 173381400 173381475 -3592665 - MIR SINE MIR -94 168 91 4203 111 35 3 chrX 173381527 173382160 -3591980 + MER39B LTR ERV1 1 653 0 297 0 0 0 chrX 173382434 173382467 -3591673 + (TG)n Simple_repeat Simple_repeat 1 33 0 1596 158 89 23 chrX 173382980 173383329 -3590811 - LTR49 LTR ERV1 -25 570 199 507 97 204 10 chrX 173383329 173383432 -3590708 + L1M1 LINE L1 16 138 -7427 * 9717 141 32 2 chrX 173383424 173384973 -3589167 + L1M1 LINE L1 1099 2694 -4871 2027 232 114 25 chrX 173384966 173386031 -3588109 + L1ME1 LINE L1 4787 5929 -237 * 238 289 48 0 chrX 173386498 173386602 -3587538 - L1ME LINE L1 -472 5649 5541 21 57 0 0 chrX 173386623 173386658 -3587482 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chrX 173387077 173387105 -3587035 + AT_rich Low_complexity Low_complexity 1 28 0 43 35 0 0 chrX 173387207 173387264 -3586876 + AT_rich Low_complexity Low_complexity 1 57 0 252 278 93 31 chrX 173387519 173387713 -3586427 + L1M4c LINE L1 1557 1762 -4622 335 348 7 0 chrX 173387800 173387941 -3586199 - MLT1F1 LTR MaLR -413 154 13 431 262 50 25 chrX 173387952 173388257 -3585883 + L1M4c LINE L1 2263 2544 -3838 2328 57 3 23 chrX 173388283 173388584 -3585556 + AluY SINE Alu 1 295 -16 3128 134 12 56 chrX 173388588 173389178 -3584962 + MER4B LTR ERV1 1 564 -46 409 280 23 23 chrX 173389217 173389392 -3584748 + L1M4c LINE L1 2558 2732 -3650 431 37 0 0 chrX 173389736 173389790 -3584350 + MADE1 DNA Mariner 1 54 -26 248 234 106 21 chrX 173390930 173391071 -3583069 - L1M4 LINE L1 -3449 2697 2545 23 33 0 0 chrX 173392088 173392118 -3582022 + AT_rich Low_complexity Low_complexity 1 30 0 2331 72 0 0 chrX 173392294 173392587 -3581553 - AluY SINE Alu -18 293 1 21 36 0 0 chrX 173392714 173392742 -3581398 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chrX 173392929 173392952 -3581188 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chrX 173392959 173392984 -3581156 + (TA)n Simple_repeat Simple_repeat 2 26 0 849 207 89 15 chrX 173393200 173393403 -3580737 - MER20 DNA MER1_type -1 218 1 664 270 13 79 chrX 173393403 173393718 -3580422 - L1MDa LINE L1 -6213 327 34 2212 103 0 3 chrX 173393791 173394092 -3580048 + AluSg SINE Alu 6 305 -5 339 327 5 93 chrX 173394103 173394340 -3579800 + MIR SINE MIR 27 241 -21 2627 130 26 28 chrX 173395280 173395978 -3578162 - L1MA4A LINE L1 -595 5708 5007 3769 131 8 0 chrX 173395978 173396567 -3577573 + L1MA4A LINE L1 5704 6297 -6 704 136 0 0 chrX 173396767 173396870 -3577270 + L1PA10 LINE L1 6056 6158 -10 759 323 87 20 chrX 173396891 173397349 -3576791 - LTR16C LTR ERVL 0 491 3 11264 84 5 1 chrX 173397573 173399085 -3575055 + L1P3 LINE L1 8 1525 -4936 7016 40 5 2 chrX 173399086 173399945 -3574195 + L1PA7 LINE L1 5294 6154 0 1419 205 7 4 chrX 173400435 173400713 -3573427 + AluJo SINE Alu 27 305 -7 23 33 0 0 chrX 173400724 173400754 -3573386 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chrX 173400986 173401008 -3573132 + AT_rich Low_complexity Low_complexity 1 22 0 227 333 0 0 chrX 173401268 173401334 -3572806 + L2 LINE L2 3246 3311 -2 376 307 105 33 chrX 173401710 173402225 -3571915 + L1MC4a LINE L1 5308 5859 -1949 881 210 19 0 chrX 173402829 173402991 -3571149 - FAM SINE Alu -9 166 2 644 236 11 22 chrX 173404903 173405081 -3569059 - L1M4 LINE L1 -1555 4591 4416 2241 238 50 6 chrX 173405097 173405775 -3568365 - L1M4 LINE L1 -2828 3318 2611 1968 120 7 17 chrX 173407315 173407615 -3566525 + AluSx SINE Alu 1 297 -15 22 70 0 0 chrX 173407633 173407676 -3566464 + AT_rich Low_complexity Low_complexity 1 43 0 1029 242 23 0 chrX 173408611 173408867 -3565273 + L2 LINE L2 2264 2525 -789 1078 316 71 27 chrX 173408881 173408991 -3565149 + LTR16A LTR ERVL 16 120 -330 4234 18 2 0 chrX 173408991 173409486 -3564654 + L1PA4 LINE L1 5658 6153 -2 1078 316 71 27 chrX 173409486 173409786 -3564354 + LTR16A LTR ERVL 120 444 -6 969 303 35 9 chrX 173409849 173410192 -3563948 + HERV16 LTR ERVL 74 425 -4571 1079 247 20 37 chrX 173410275 173410680 -3563460 + L1MB8 LINE L1 5758 6155 -23 252 0 0 0 chrX 173410746 173410774 -3563366 + (GA)n Simple_repeat Simple_repeat 2 29 0 213 383 47 8 chrX 173410857 173410985 -3563155 - L2 LINE L2 -1 3271 3139 211 174 0 58 chrX 173411327 173411396 -3562744 + (TA)n Simple_repeat Simple_repeat 2 66 0 1449 33 0 0 chrX 173411499 173411680 -3562460 + L1P LINE L1 5014 5194 -952 272 382 49 20 chrX 173412607 173412853 -3561287 - HAL1b LINE L1 -731 617 365 24 32 0 0 chrX 173413127 173413158 -3560982 + AT_rich Low_complexity Low_complexity 1 31 0 2144 111 3 0 chrX 173413158 173413446 -3560694 - AluSx SINE Alu -23 289 1 2033 124 3 0 chrX 173413617 173413947 -3560193 - AluSx SINE Alu 0 331 1 978 270 157 30 chrX 173414114 173414610 -3559530 + MER34B LTR ERV1 5 563 -2 24 53 0 0 chrX 173415084 173415122 -3559018 + AT_rich Low_complexity Low_complexity 1 38 0 1099 206 5 5 chrX 173415234 173415452 -3558688 + MER20 DNA MER1_type 2 219 0 21 0 0 0 chrX 173416521 173416542 -3557598 + AT_rich Low_complexity Low_complexity 1 21 0 519 241 83 79 chrX 173416676 173416929 -3557211 + L1ME3A LINE L1 4528 4781 -1365 646 274 60 49 chrX 173416977 173417327 -3556813 + L1ME3A LINE L1 5810 6163 -7 763 259 19 34 chrX 173417384 173417714 -3556426 + L1MC5 LINE L1 6928 7250 -735 306 323 0 8 chrX 173417720 173417844 -3556296 + L1MC4a LINE L1 7247 7369 -439 * 505 294 52 52 chrX 173417828 173418328 -3555812 + L1MC5 LINE L1 7260 7759 -202 345 62 0 0 chrX 173418365 173418413 -3555727 + (CA)n Simple_repeat Simple_repeat 2 49 0 592 235 114 79 chrX 173418431 173418838 -3555302 - MER110 LTR ERV1 -5 486 38 292 386 43 14 chrX 173419201 173419408 -3554732 - MIR SINE MIR -18 244 32 193 158 0 53 chrX 173419837 173419875 -3554265 - L2 LINE L2 -6 3307 3272 205 232 29 0 chrX 173420002 173420071 -3554069 + (TA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chrX 173420958 173420990 -3553150 + AT_rich Low_complexity Low_complexity 1 32 0 264 59 0 0 chrX 173420990 173421024 -3553116 + (CA)n Simple_repeat Simple_repeat 2 35 0 294 220 0 0 chrX 173421160 173421219 -3552921 - MIR SINE MIR 0 262 204 301 230 37 70 chrX 173421366 173421553 -3552587 - L1MC4 LINE L1 -1 8041 7861 221 256 13 51 chrX 173421740 173421818 -3552322 + MIR SINE MIR 174 248 -14 2061 133 48 25 chrX 173423389 173423743 -3550397 + THE1B LTR MaLR 1 362 -2 11711 96 4 1 chrX 173423745 173425320 -3548820 + THE1B-int LTR MaLR 1 1580 0 1993 111 87 29 chrX 173425320 173425664 -3548476 + THE1B LTR MaLR 1 364 0 314 303 15 23 chrX 173426962 173427094 -3547046 - LTR67 LTR ERVL 0 557 427 2164 210 57 77 chrX 173427356 173427708 -3546432 - L1ME1 LINE L1 -168 5998 5640 1918 161 55 0 chrX 173427708 173428038 -3546102 + MER7A DNA MER2_type 1 346 0 2164 210 57 77 chrX 173428038 173428372 -3545768 - L1ME1 LINE L1 -526 5640 5324 1466 247 93 49 chrX 173428372 173428942 -3545198 + MLT1G1 LTR MaLR 1 595 0 5967 102 20 0 chrX 173428995 173430212 -3543928 - L1PA13 LINE L1 0 6163 4954 227 269 30 0 chrX 173430328 173430395 -3543745 - L1MD3 LINE L1 -1327 6668 6600 36 0 0 0 chrX 173432775 173432811 -3541329 + AT_rich Low_complexity Low_complexity 1 36 0 344 277 135 43 chrX 173433295 173433436 -3540704 - MIR SINE MIR -96 166 13 22 0 0 0 chrX 173433456 173433478 -3540662 + AT_rich Low_complexity Low_complexity 1 22 0 772 128 45 39 chrX 173433481 173433637 -3540503 - L1MA8 LINE L1 -21 6270 6114 2022 205 62 4 chrX 173435023 173435492 -3538648 - L1MDb LINE L1 -5149 1394 899 974 230 37 137 chrX 173435650 173436211 -3537929 - L1MDb LINE L1 -6016 524 20 296 140 0 0 chrX 173436213 173436263 -3537877 - L1ME1 LINE L1 -260 5906 5857 625 158 0 35 chrX 173436282 173436396 -3537744 - HY1 scRNA scRNA -2 110 1 24 67 0 0 chrX 173437181 173437226 -3536914 + AT_rich Low_complexity Low_complexity 1 45 0 339 277 59 8 chrX 173437305 173437424 -3536716 - LTR40b LTR ERVL -337 125 1 1661 145 10 44 chrX 173437672 173437968 -3536172 + AluJo SINE Alu 1 286 -26 21 57 0 0 chrX 173437977 173438012 -3536128 + AT_rich Low_complexity Low_complexity 1 35 0 253 226 19 0 chrX 173438540 173438593 -3535547 + GA-rich Low_complexity Low_complexity 1 54 0 5541 150 43 27 chrX 173438740 173439952 -3534188 - L1MA8 LINE L1 0 6291 5072 4492 146 55 22 chrX 173439945 173440814 -3533326 + L1 LINE L1 4128 5025 -1121 * 275 330 110 9 chrX 173441548 173441657 -3532483 + L2 LINE L2 3138 3257 -15 1183 183 55 31 chrX 173442284 173442541 -3531599 - AluJb SINE Alu -2 310 48 235 230 161 35 chrX 173442617 173442704 -3531436 - MIR SINE MIR -67 195 98 1513 168 81 9 chrX 173442897 173443218 -3530922 - MER2 DNA MER2_type 0 344 1 303 319 48 31 chrX 173443363 173443575 -3530565 + MIR SINE MIR 1 262 0 234 343 34 34 chrX 173443769 173443947 -3530193 + L2 LINE L2 2133 2310 -1004 265 256 33 25 chrX 173444208 173444329 -3529811 + (TATATG)n Simple_repeat Simple_repeat 2 123 0 545 339 57 10 chrX 173444922 173445220 -3528920 + MLT1I LTR MaLR 5 316 -93 29 28 0 0 chrX 173445336 173445372 -3528768 + AT_rich Low_complexity Low_complexity 1 36 0 530 257 31 95 chrX 173446694 173446916 -3527224 + L1ME2 LINE L1 5945 6152 -12 1214 153 5 10 chrX 173447073 173447275 -3526865 + AluJb SINE Alu 3 203 -109 1401 40 0 0 chrX 173447275 173447452 -3526688 - L1PA4 LINE L1 -2238 3908 3732 12321 27 1 6 chrX 173447452 173449736 -3524404 + L1PA4 LINE L1 3915 6155 0 770 111 8 0 chrX 173449742 173449859 -3524281 + AluSg/x SINE Alu 190 307 -3 837 196 78 0 chrX 173450549 173450728 -3523412 - L1MA9 LINE L1 -55 6257 6065 677 157 16 0 chrX 173450730 173450851 -3523289 + L1MA9 LINE L1 5830 5952 -360 23 0 0 0 chrX 173450861 173450884 -3523256 + AT_rich Low_complexity Low_complexity 1 23 0 1156 304 105 22 chrX 173452161 173453053 -3521087 - L1MEc LINE L1 -5347 1049 84 200 281 18 18 chrX 173453101 173453158 -3520982 + MER5B DNA MER1_type 118 174 -4 581 201 10 7 chrX 173453534 173453727 -3520413 + MER58A DNA MER1_type 1 224 0 244 337 0 20 chrX 173454889 173454990 -3519150 - L2 LINE L2 -23 3290 3192 213 39 0 0 chrX 173455569 173455595 -3518545 + (CATA)n Simple_repeat Simple_repeat 2 27 0 30 27 0 0 chrX 173456810 173456847 -3517293 + AT_rich Low_complexity Low_complexity 1 37 0 416 356 85 23 chrX 173458305 173458611 -3515529 - L2 LINE L2 -560 2754 2430 2120 211 14 68 chrX 173458852 173459426 -3514714 - LTR55 LTR ERV -5 543 1 245 315 113 43 chrX 173459590 173459892 -3514248 - L2 LINE L2 0 3313 2991 7943 153 19 30 chrX 173461727 173463143 -3510997 + MER21B-int LTR ERV1 2733 4132 -59 2367 164 118 2 chrX 173463227 173463667 -3510473 + MER21B LTR ERV1 2 492 -371 671 237 0 0 chrX 173463678 173463813 -3510327 + FRAM SINE Alu 1 135 -41 1803 170 83 15 chrX 173464575 173464974 -3509166 + MSTB LTR MaLR 1 426 0 24 0 0 0 chrX 173666805 173666829 -3307311 + AT_rich Low_complexity Low_complexity 1 24 0 659 114 20 7 chrX 173667069 173667218 -3306922 + (TG)n Simple_repeat Simple_repeat 2 152 0 592 250 111 34 chrX 173667525 173667733 -3306407 - MER58A DNA MER1_type 0 224 1 1700 175 6 16 chrX 173667808 173668122 -3306018 - AluJo SINE Alu -1 311 1 2161 95 11 0 chrX 173668711 173668995 -3305145 - AluSx SINE Alu -17 295 9 2916 157 15 26 chrX 173669004 173669375 -3304765 - L1PB4 LINE L1 -117 6039 5674 1885 128 3 34 chrX 173669375 173669671 -3304469 - AluSx SINE Alu -23 289 3 2916 157 15 26 chrX 173669671 173669846 -3304294 - L1PB4 LINE L1 -482 5674 5499 1597 181 0 11 chrX 173670053 173670335 -3303805 - AluJo SINE Alu -10 302 24 24 53 0 0 chrX 173670371 173670409 -3303731 + AT_rich Low_complexity Low_complexity 1 38 0 680 326 107 32 chrX 173670450 173671126 -3303014 + L2 LINE L2 2584 3309 -4 21 36 0 0 chrX 173671133 173671161 -3302979 + AT_rich Low_complexity Low_complexity 1 28 0 1380 239 48 58 chrX 173671311 173671444 -3302696 + MLT1D LTR MaLR 27 160 -345 185 65 32 0 chrX 173671444 173671475 -3302665 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2012 137 0 0 chrX 173671475 173671753 -3302387 - AluSx SINE Alu -32 280 3 1380 239 48 58 chrX 173671753 173671847 -3302293 + MLT1D LTR MaLR 159 252 -253 2628 98 5 11 chrX 173671847 173672224 -3301916 - THE1C LTR MaLR 0 375 1 1380 239 48 58 chrX 173672224 173672476 -3301664 + MLT1D LTR MaLR 252 503 -2 1834 178 3 7 chrX 173672480 173672778 -3301362 - AluJo SINE Alu -15 297 1 2157 129 0 0 chrX 173673342 173673644 -3300496 - AluSx SINE Alu -10 302 1 2019 207 130 2 chrX 173673731 173674176 -3299964 - MLT2B1 LTR ERVL -15 505 4 1018 238 5 0 chrX 173674403 173674613 -3299527 - MER20 DNA MER1_type -1 218 8 287 314 10 10 chrX 173674922 173675024 -3299116 + GA-rich Low_complexity Low_complexity 2 103 0 231 59 39 20 chrX 173675159 173675210 -3298930 + (CAAAAA)n Simple_repeat Simple_repeat 3 54 0 2215 115 0 3 chrX 173675843 173676148 -3297992 - AluSx SINE Alu -8 304 1 1093 229 30 30 chrX 173677098 173677400 -3296740 + MLT2C1 LTR ERVL 5 306 -91 790 157 19 12 chrX 173677437 173677697 -3296443 + (TAGA)n Simple_repeat Simple_repeat 1 261 0 305 96 0 39 chrX 173677723 173677775 -3296365 + MLT2C1 LTR ERVL 465 514 -6 245 151 19 0 chrX 173678992 173679045 -3295095 + (TA)n Simple_repeat Simple_repeat 1 54 0 23 33 0 0 chrX 173679131 173679161 -3294979 + AT_rich Low_complexity Low_complexity 1 30 0 2010 129 7 13 chrX 173679642 173679945 -3294195 + AluSx SINE Alu 2 302 -10 369 287 100 31 chrX 173680197 173680556 -3293584 + LTR16A LTR ERVL 51 438 -12 639 165 0 0 chrX 173680646 173680755 -3293385 - FRAM SINE Alu -5 171 63 2084 174 7 68 chrX 173680756 173681198 -3292942 + LTR9 LTR ERV1 1 415 -197 1426 149 0 28 chrX 173681304 173681559 -3292581 - L1MB3 LINE L1 -224 5959 5712 828 188 35 15 chrX 173681556 173681753 -3292387 + L1 LINE L1 4952 5152 -994 * 2095 141 7 0 chrX 173682438 173682742 -3291398 - AluSx SINE Alu -6 306 1 1291 176 231 50 chrX 173682793 173683358 -3290782 - LTR48 LTR ERV1 0 644 33 2026 137 0 7 chrX 173683358 173683650 -3290490 - AluSx SINE Alu -22 290 1 1291 176 231 50 chrX 173683650 173683691 -3290449 - LTR48 LTR ERV1 -611 33 1 26 30 0 0 chrX 173684246 173684279 -3289861 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chrX 173684707 173684737 -3289403 + AT_rich Low_complexity Low_complexity 1 30 0 1880 130 89 11 chrX 173684954 173685301 -3288839 + THE1C LTR MaLR 2 375 0 833 119 0 0 chrX 173685413 173685539 -3288601 + L1MA2 LINE L1 6173 6298 -6 22 0 0 0 chrX 173686318 173686340 -3287800 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chrX 173686496 173686523 -3287617 + AT_rich Low_complexity Low_complexity 1 27 0 1188 259 62 109 chrX 173686850 173687581 -3286559 - L1ME1 LINE L1 -90 6076 5381 478 79 13 71 chrX 173687597 173687840 -3286300 + (TA)n Simple_repeat Simple_repeat 1 228 0 1236 217 14 7 chrX 173687849 173688125 -3286015 - AluSx SINE Alu -34 278 1 588 206 9 75 chrX 173688126 173688354 -3285786 - L1ME1 LINE L1 -748 5398 5186 1779 162 0 11 chrX 173688458 173688766 -3285374 + AluSx SINE Alu 1 305 0 395 285 20 0 chrX 173689820 173689971 -3284169 + (TA)n Simple_repeat Simple_repeat 1 154 0 345 160 28 0 chrX 173690036 173690142 -3283998 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 228 7 14 chrX 173690185 173690485 -3283655 + (TA)n Simple_repeat Simple_repeat 1 297 0 512 212 15 11 chrX 173690499 173690765 -3283375 + (TA)n Simple_repeat Simple_repeat 1 267 0 22 0 0 0 chrX 173691762 173691784 -3282356 + AT_rich Low_complexity Low_complexity 1 22 0 2751 163 19 67 chrX 173691784 173692241 -3281899 - L1MA8 LINE L1 -4 6287 5868 2093 122 23 0 chrX 173692241 173692544 -3281596 - AluSx SINE Alu -2 310 1 2751 163 19 67 chrX 173692544 173692726 -3281414 - L1MA8 LINE L1 -423 5868 5679 260 98 49 0 chrX 173693498 173693539 -3280601 - MER116 DNA Mariner -2 78 36 635 104 104 75 chrX 173694180 173694271 -3279869 - L1MA7 LINE L1 -4 6287 6200 1728 159 52 0 chrX 173694271 173694391 -3279749 + AluSx SINE Alu 1 113 -218 366 23 0 0 chrX 173694391 173694434 -3279706 + (CA)n Simple_repeat Simple_repeat 2 44 0 1728 159 52 0 chrX 173694434 173694630 -3279510 + AluSx SINE Alu 113 331 0 635 104 104 75 chrX 173694630 173694710 -3279430 - L1MA7 LINE L1 -91 6200 6110 511 113 0 0 chrX 173694880 173694960 -3279180 + MADE1 DNA Mariner 1 80 0 1089 197 0 0 chrX 173695567 173695765 -3278375 - AluJb SINE Alu -25 287 90 2218 93 7 0 chrX 173695818 173696108 -3278032 + AluSx SINE Alu 1 292 -20 491 174 0 1 chrX 173696159 173696253 -3277887 + L1MA6 LINE L1 6023 6115 -185 2584 146 19 60 chrX 173696452 173696492 -3277648 - L1MA9 LINE L1 -22 6290 6250 1695 86 0 13 chrX 173696492 173696725 -3277415 + MER30 DNA MER1_type 1 230 0 2584 146 19 60 chrX 173696725 173697205 -3276935 - L1MA9 LINE L1 -62 6250 5791 1032 103 0 0 chrX 173697422 173697567 -3276573 + L1MC1 LINE L1 6034 6178 -155 374 21 21 0 chrX 173697569 173697616 -3276524 + L1MC1 LINE L1 6275 6322 -11 1865 137 0 46 chrX 173697619 173697925 -3276215 + AluJo SINE Alu 3 294 -18 32 57 0 0 chrX 173697931 173697984 -3276156 + AT_rich Low_complexity Low_complexity 1 53 0 1458 187 14 18 chrX 173699112 173699448 -3274692 + AluJo SINE Alu 1 335 0 236 309 10 21 chrX 173699464 173699561 -3274579 + L1MC4 LINE L1 7924 8019 -23 438 313 117 20 chrX 173699641 173699993 -3274147 + L1ME3A LINE L1 5505 5890 -280 328 348 22 47 chrX 173700083 173700405 -3273735 - ERVL LTR ERVL -3967 1797 1484 917 202 6 14 chrX 173700442 173700657 -3273483 + L1MA8 LINE L1 5741 5949 -231 441 298 28 23 chrX 173701416 173701631 -3272509 + L1ME3A LINE L1 5691 5906 -264 240 86 0 0 chrX 173701849 173701884 -3272256 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 346 73 94 10 chrX 173701884 173701980 -3272160 + (TAGA)n Simple_repeat Simple_repeat 1 104 0 6910 59 0 0 chrX 173702253 173703745 -3270395 - L1PA6 LINE L1 0 6154 4650 1095 161 44 5 chrX 173705210 173705413 -3268727 - MLT1B LTR MaLR 0 390 180 1897 193 11 8 chrX 173705413 173705800 -3268340 - MLT1B LTR MaLR -3 393 1 2554 154 43 4 chrX 173705884 173706350 -3267790 - MER31A LTR ERV1 0 485 2 31 58 0 0 chrX 173707244 173707296 -3266844 + AT_rich Low_complexity Low_complexity 1 52 0 869 191 13 93 chrX 173707857 173708093 -3266047 + MER20 DNA MER1_type 2 218 -1 312 253 13 0 chrX 173708127 173708206 -3265934 - L1ME2 LINE L1 -9 6155 6076 1642 212 0 0 chrX 173708206 173708512 -3265628 + AluJo SINE Alu 2 307 0 257 324 15 0 chrX 173708513 173708581 -3265559 + HERV16 LTR ERVL 1753 1821 -3175 323 268 9 71 chrX 173708643 173708755 -3265385 + AluJo SINE Alu 58 162 -140 516 95 0 0 chrX 173708924 173709008 -3265132 + (TA)n Simple_repeat Simple_repeat 2 85 0 1645 202 22 0 chrX 173709093 173709405 -3264735 + LTR57 LTR ERVL 91 409 -2 339 324 61 0 chrX 173709413 173709561 -3264579 + HERV16 LTR ERVL 1237 1393 -3603 4475 194 30 17 chrX 173709565 173711256 -3262884 + L1MA9 LINE L1 4525 6233 -79 2392 131 3 3 chrX 173711256 173711608 -3262532 + THE1B LTR MaLR 1 352 -12 232 299 0 0 chrX 173711634 173711721 -3262419 + L1MC4 LINE L1 6614 6700 -1342 4396 141 15 14 chrX 173712217 173712933 -3261207 + LTR62 LTR ERVK 1 717 -2 271 190 63 0 chrX 173713150 173713229 -3260911 + L1M4 LINE L1 2329 2412 -3734 1109 205 26 26 chrX 173714300 173714529 -3259611 + Tigger5 DNA MER2_type 2 230 -2093 1130 185 35 9 chrX 173714533 173714760 -3259380 + Tigger5 DNA MER2_type 2091 2323 0 236 91 23 0 chrX 173714824 173714868 -3259272 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 96 0 0 chrX 173714937 173715010 -3259130 + AT_rich Low_complexity Low_complexity 1 73 0 1789 178 77 30 chrX 173715106 173715510 -3258630 + L1MA4 LINE L1 5878 6300 0 46 33 0 0 chrX 173715594 173715654 -3258486 + AT_rich Low_complexity Low_complexity 1 60 0 394 200 32 42 chrX 173716031 173716126 -3258014 + MIR SINE MIR 28 121 -141 2063 139 3 3 chrX 173716236 173716546 -3257594 - AluSx SINE Alu -2 310 1 217 318 85 23 chrX 173717247 173717376 -3256764 - MIR SINE MIR -67 195 59 3059 152 9 28 chrX 173717969 173718535 -3255605 - MER4B LTR ERV1 -55 555 1 197 374 22 11 chrX 173718595 173718686 -3255454 - MIR SINE MIR -150 112 21 3555 49 0 7 chrX 173718784 173719235 -3254905 + LTR7 LTR ERV1 1 448 -2 18853 91 30 7 chrX 173719237 173722155 -3251985 + HERVH LTR ERV1 1 2987 -4726 824 142 20 0 chrX 173722149 173722297 -3251843 + HERVH LTR ERV1 3140 3290 -4423 * 2357 134 7 14 chrX 173722287 173722721 -3251419 + HERVH LTR ERV1 3492 3922 -3791 3264 150 17 2 chrX 173722950 173723469 -3250671 - MER1A DNA MER1_type 0 527 1 2727 179 33 0 chrX 173724365 173724912 -3249228 + L1MB7 LINE L1 5617 6181 -3 21 57 0 0 chrX 173724958 173724993 -3249147 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chrX 173726980 173727010 -3247130 + AT_rich Low_complexity Low_complexity 1 30 0 4319 131 16 12 chrX 173727010 173727780 -3246360 - L1PB3 LINE L1 -1 6153 5381 31 0 0 0 chrX 173727864 173727895 -3246245 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chrX 173728457 173728486 -3245654 + AT_rich Low_complexity Low_complexity 1 29 0 911 43 0 0 chrX 173728830 173728947 -3245193 + L1PA4 LINE L1 6039 6155 0 1964 129 7 7 chrX 173730117 173730419 -3243721 + AluJb SINE Alu 1 302 -10 310 222 46 137 chrX 173732317 173732470 -3241670 + MER5B DNA MER1_type 2 140 -38 23 78 0 0 chrX 173732969 173733020 -3241120 + GC_rich Low_complexity Low_complexity 1 51 0 192 89 44 22 chrX 173733116 173733161 -3240979 + GA-rich Low_complexity Low_complexity 2 47 0 2034 165 33 31 chrX 173733267 173733815 -3240325 - MLT2A2 LTR ERVL -1 553 1 186 304 47 108 chrX 173733922 173734136 -3240004 + L2 LINE L2 2214 2414 -900 1477 192 35 3 chrX 173734146 173734485 -3239655 - L1MA9 LINE L1 -170 6142 5793 905 182 0 87 chrX 173734504 173734735 -3239405 + MER2 DNA MER2_type 1 211 -134 37 39 0 0 chrX 173734740 173734791 -3239349 + AT_rich Low_complexity Low_complexity 1 51 0 1001 179 0 0 chrX 173734841 173735025 -3239115 - L1MA9 LINE L1 -498 5793 5610 724 201 34 0 chrX 173735025 173735044 -3239096 + L1MA9 LINE L1 6128 6145 -167 186 43 0 0 chrX 173735044 173735067 -3239073 + (CA)n Simple_repeat Simple_repeat 2 24 0 724 201 34 0 chrX 173735067 173735223 -3238917 + L1MA9 LINE L1 6145 6312 0 333 314 47 35 chrX 173735416 173735588 -3238552 + L2 LINE L2 2619 2792 -522 1992 116 18 3 chrX 173735727 173736012 -3238128 + AluSp SINE Alu 17 305 -8 21 0 0 0 chrX 173736597 173736618 -3237522 + AT_rich Low_complexity Low_complexity 1 21 0 2160 130 3 0 chrX 173736788 173737088 -3237052 + AluSx SINE Alu 1 301 -11 2125 115 0 3 chrX 173737092 173737380 -3236760 + AluSx SINE Alu 1 287 -25 27 62 0 0 chrX 173738330 173738378 -3235762 + AT_rich Low_complexity Low_complexity 1 48 0 25 51 0 0 chrX 173738837 173738876 -3235264 + AT_rich Low_complexity Low_complexity 1 39 0 390 176 0 0 chrX 173738927 173738995 -3235145 - L1M2 LINE L1 -614 5677 5610 2062 133 3 0 chrX 173739180 173739482 -3234658 + AluY SINE Alu 1 303 -8 429 282 46 24 chrX 173740174 173740405 -3233735 - L1MC4 LINE L1 -947 6946 6623 22 35 0 0 chrX 173740470 173740499 -3233641 + AT_rich Low_complexity Low_complexity 1 29 0 266 202 83 0 chrX 173740502 173740586 -3233554 - L1MA9 LINE L1 -24 6288 6198 1995 146 3 0 chrX 173741322 173741610 -3232530 + AluSx SINE Alu 1 289 -23 1700 212 68 27 chrX 173741611 173742049 -3232091 - MLT2B1 LTR ERVL -64 456 1 234 284 83 46 chrX 173743082 173743264 -3230876 - MIR SINE MIR -60 202 16 23 0 0 0 chrX 173743499 173743522 -3230618 + AT_rich Low_complexity Low_complexity 1 23 0 223 150 50 12 chrX 173743549 173743629 -3230511 + GA-rich Low_complexity Low_complexity 1 83 0 2506 125 9 35 chrX 173744586 173745018 -3229122 + MER4B LTR ERV1 1 421 -189 3503 49 2 7 chrX 173745018 173745467 -3228673 - LTR7 LTR ERV1 -3 447 1 1495 57 40 20 chrX 173745467 173745714 -3228426 - HERVH LTR ERV1 0 7713 7462 2276 101 13 7 chrX 173746501 173746809 -3227331 - AluSx SINE Alu -2 310 1 664 158 23 0 chrX 173746942 173747075 -3227065 - L1PB4 LINE L1 0 6156 6021 2313 79 5 6 chrX 173747192 173747593 -3226547 - L1PA8A LINE L1 -541 5590 5190 325 191 0 0 chrX 173747593 173747661 -3226479 - L1MA7 LINE L1 -180 6111 6044 307 117 90 7 chrX 173747814 173747959 -3226181 + (TA)n Simple_repeat Simple_repeat 1 157 0 506 155 46 20 chrX 173748040 173748479 -3225661 + (TA)n Simple_repeat Simple_repeat 1 450 0 201 241 17 17 chrX 173748493 173748551 -3225589 + (TA)n Simple_repeat Simple_repeat 1 58 0 1152 226 39 77 chrX 173748925 173749364 -3224776 + MLT2B3 LTR ERVL 133 554 0 240 182 0 0 chrX 173749373 173749417 -3224723 + MLT1D LTR MaLR 2 45 -422 1729 70 8 0 chrX 173749481 173749723 -3224417 - L1PA13 LINE L1 -259 5904 5661 1067 228 231 3 chrX 173749725 173750072 -3224068 + MLT1D LTR MaLR 73 498 -7 4372 153 7 15 chrX 173751128 173751939 -3222201 - L1MA4 LINE L1 0 6300 5496 1087 294 122 46 chrX 173752464 173753244 -3220896 + Charlie2b DNA MER1_type 344 1182 -1600 837 275 67 50 chrX 173753706 173754201 -3219939 + L1MC4 LINE L1 6572 7074 -968 220 252 19 0 chrX 173754213 173754320 -3219820 + (TA)n Simple_repeat Simple_repeat 1 109 0 * 300 154 0 0 chrX 173754301 173754353 -3219787 + (TG)n Simple_repeat Simple_repeat 1 52 0 2870 134 2 29 chrX 173754437 173754928 -3219212 + MER1A DNA MER1_type 52 529 0 2478 148 2 0 chrX 173754992 173755397 -3218743 - L1PA15 LINE L1 -3 6162 5757 5094 99 17 0 chrX 173755422 173756181 -3217959 - L1PA11 LINE L1 -2 6172 5401 231 314 58 7 chrX 173756179 173756316 -3217824 + L1MC4a LINE L1 7172 7315 -493 * 3069 141 20 0 chrX 173756530 173757018 -3217122 + MER1A DNA MER1_type 32 529 0 379 390 30 4 chrX 173757646 173757915 -3216225 - L2 LINE L2 -337 2977 2702 895 166 213 68 chrX 173757987 173758070 -3216070 - MER44D DNA MER2_type -1882 609 539 479 17 17 0 chrX 173758070 173758130 -3216010 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 895 166 213 68 chrX 173758130 173758342 -3215798 - MER44D DNA MER2_type -1952 539 1 1600 89 66 27 chrX 173758366 173758624 -3215516 - THE1B LTR MaLR -96 268 1 1209 148 0 0 chrX 173758665 173758868 -3215272 + L1MA2 LINE L1 6102 6304 0 845 264 63 48 chrX 173758885 173759348 -3214792 + MLT1D LTR MaLR 27 496 -9 555 124 21 10 chrX 173759747 173759844 -3214296 + MER4A LTR ERV1 1 98 -566 292 104 21 0 chrX 173759844 173759892 -3214248 + MER4A LTR ERV1 261 309 -355 2771 63 3 30 chrX 173759892 173760257 -3213883 - THE1A LTR MaLR 0 355 1 1831 127 0 23 chrX 173760266 173760566 -3213574 + MER4A LTR ERV1 372 664 0 317 82 20 0 chrX 173761384 173761433 -3212707 + (TC)n Simple_repeat Simple_repeat 2 51 0 649 69 10 10 chrX 173761518 173761619 -3212521 + (TC)n Simple_repeat Simple_repeat 2 102 0 637 176 0 37 chrX 173762554 173762741 -3211399 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chrX 173762819 173762841 -3211299 + AT_rich Low_complexity Low_complexity 1 22 0 344 290 0 24 chrX 173763747 173763916 -3210224 + MER53 DNA DNA 2 166 -23 666 233 0 0 chrX 173764610 173764790 -3209350 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 209 327 6 0 chrX 173764801 173764957 -3209183 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 645 230 0 0 chrX 173764998 173765176 -3208964 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 208 232 11 32 chrX 173765260 173765355 -3208785 + (TCCA)n Simple_repeat Simple_repeat 3 95 0 24 0 0 0 chrX 173765889 173765913 -3208227 + AT_rich Low_complexity Low_complexity 1 24 0 273 203 43 0 chrX 173765913 173766024 -3208116 + GA-rich Low_complexity Low_complexity 1 115 0 1772 175 3 10 chrX 173766075 173766378 -3207762 - AluJb SINE Alu -11 301 1 1976 119 55 7 chrX 173767562 173767616 -3206524 - AluSx SINE Alu -5 307 257 189 74 0 0 chrX 173767616 173767643 -3206497 + (GAGTG)n Simple_repeat Simple_repeat 1 27 0 1976 119 55 7 chrX 173767643 173767881 -3206259 - AluSx SINE Alu -55 257 1 190 172 0 35 chrX 173767955 173768013 -3206127 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chrX 173768020 173768042 -3206098 + AT_rich Low_complexity Low_complexity 1 22 0 1234 133 19 6 chrX 173768400 173768638 -3205502 + L1MA9 LINE L1 5871 6100 -83 304 188 56 44 chrX 173768645 173768805 -3205335 + (TTATA)n Simple_repeat Simple_repeat 5 166 0 278 221 37 49 chrX 173768995 173769158 -3204982 + (TTATA)n Simple_repeat Simple_repeat 1 161 0 2301 78 3 7 chrX 173769168 173769463 -3204677 - AluY SINE Alu -17 294 1 214 244 30 30 chrX 173769543 173769674 -3204466 + (TATAA)n Simple_repeat Simple_repeat 4 134 0 301 211 46 40 chrX 173769905 173770080 -3204060 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 26 30 0 0 chrX 173770241 173770274 -3203866 + AT_rich Low_complexity Low_complexity 1 33 0 717 264 65 0 chrX 173770921 173771122 -3203018 - MER58A DNA MER1_type -10 214 1 1707 170 3 32 chrX 173771170 173771482 -3202658 + AluJo SINE Alu 2 304 -8 4448 94 14 17 chrX 173772245 173772295 -3201845 + L1PA10 LINE L1 5515 5564 -604 2465 77 0 0 chrX 173772295 173772595 -3201545 + AluY SINE Alu 1 300 -11 4448 94 14 17 chrX 173772595 173773182 -3200958 + L1PA10 LINE L1 5564 6150 -18 488 225 16 47 chrX 173773333 173773371 -3200769 + MER58B DNA MER1_type 202 240 -2180 1966 180 25 22 chrX 173773371 173773487 -3200653 + MER57A LTR ERV1 1 115 -288 1673 150 29 51 chrX 173773487 173773800 -3200340 - AluJo SINE Alu -6 306 1 1966 180 25 22 chrX 173773800 173774084 -3200056 + MER57A LTR ERV1 115 402 -1 488 225 16 47 chrX 173774084 173774174 -3199966 + MER58B DNA MER1_type 240 326 -15 21 36 0 0 chrX 173775034 173775062 -3199078 + AT_rich Low_complexity Low_complexity 1 28 0 3346 127 35 6 chrX 173775938 173776450 -3197690 + MER1A DNA MER1_type 1 527 0 347 312 0 0 chrX 173776545 173776638 -3197502 + MLT1H LTR MaLR 262 354 -195 1146 171 5 0 chrX 173776789 173776994 -3197146 + MLT2B2 LTR ERVL 1 206 -309 4484 119 4 12 chrX 173776998 173777688 -3196452 + LTR8 LTR ERV1 7 691 0 727 227 0 11 chrX 173777699 173777875 -3196265 + MLT2B2 LTR ERVL 227 400 -115 467 189 0 0 chrX 173777893 173777967 -3196173 - AluJ/FLAM SINE Alu -236 76 3 424 279 88 0 chrX 173777970 173778117 -3196023 - MER58A DNA MER1_type 0 165 6 454 246 15 75 chrX 173778222 173778421 -3195719 + LTR4 LTR ERV1 16 202 -394 827 208 39 53 chrX 173778601 173778885 -3195255 + LTR4 LTR ERV1 317 596 0 358 279 111 24 chrX 173779292 173779500 -3194640 - L1MEc LINE L1 -6027 369 144 2718 122 35 2 chrX 173779591 173780019 -3194121 + MER4E LTR ERV1 1 442 -337 1070 97 13 0 chrX 173780012 173780166 -3193974 + MER4E LTR ERV1 611 766 0 * 3667 106 18 23 chrX 173780612 173780732 -3193408 - MER41A LTR ERV1 0 554 435 2346 107 0 3 chrX 173780732 173781040 -3193100 + AluSg SINE Alu 1 307 -3 3667 106 18 23 chrX 173781040 173781476 -3192664 - MER41A LTR ERV1 -119 435 1 1627 184 27 27 chrX 173781633 173781932 -3192208 - AluJo SINE Alu -13 299 1 1699 167 10 29 chrX 173782806 173783112 -3191028 + AluJb SINE Alu 1 300 -12 21 0 0 0 chrX 173783669 173783690 -3190450 + AT_rich Low_complexity Low_complexity 1 21 0 354 286 9 9 chrX 173784205 173784317 -3189823 + (TA)n Simple_repeat Simple_repeat 2 113 0 822 213 13 49 chrX 173784940 173784961 -3189179 - MER20 DNA MER1_type -1 218 198 4543 155 51 1 chrX 173784961 173785748 -3188392 + LTR1B LTR ERV1 1 826 0 822 213 13 49 chrX 173785748 173785951 -3188189 - MER20 DNA MER1_type -21 198 2 1327 183 3 97 chrX 173786140 173786451 -3187689 - AluJb SINE Alu -30 282 1 565 223 73 113 chrX 173786457 173787158 -3186982 - L1MC5 LINE L1 -184 7777 7105 1031 230 62 43 chrX 173787309 173787607 -3186533 - MLT1A2 LTR MaLR -15 359 51 2469 113 8 3 chrX 173787607 173787969 -3186171 - THE1B LTR MaLR 0 364 1 1031 230 62 43 chrX 173787969 173788022 -3186118 - MLT1A2 LTR MaLR -323 51 1 2527 165 34 47 chrX 173788303 173788440 -3185700 - LTR24C LTR ERV1 0 593 456 2345 98 0 16 chrX 173788440 173788746 -3185394 + AluSg SINE Alu 1 301 -9 2527 165 34 47 chrX 173788746 173789206 -3184934 - LTR24C LTR ERV1 -137 456 44 2015 143 0 16 chrX 173789206 173789514 -3184626 + AluSx SINE Alu 1 303 -9 2527 165 34 47 chrX 173789514 173789555 -3184585 - LTR24C LTR ERV1 -549 44 4 1554 150 0 35 chrX 173790083 173790363 -3183777 + AluSx SINE Alu 50 312 0 1565 189 22 6 chrX 173790730 173791046 -3183094 + MSTB1 LTR MaLR 1 321 -111 1065 144 9 50 chrX 173791046 173791268 -3182872 - LTR1 LTR ERV1 0 785 573 2110 107 3 13 chrX 173791275 173791573 -3182567 + AluSx SINE Alu 1 295 -17 2264 102 99 9 chrX 173791619 173791963 -3182177 - THE1C LTR MaLR 0 375 1 449 0 0 0 chrX 173792007 173792059 -3182081 - THE1B LTR MaLR -312 52 1 2200 125 7 0 chrX 173792947 173793250 -3180890 + AluSx SINE Alu 1 305 -7 217 271 0 0 chrX 173793339 173793387 -3180753 + GA-rich Low_complexity Low_complexity 3 50 0 192 276 83 77 chrX 173793831 173793987 -3180153 - L2 LINE L2 -2 3311 3155 31 0 0 0 chrX 173794660 173794691 -3179449 + AT_rich Low_complexity Low_complexity 1 31 0 1744 173 3 7 chrX 173794708 173794991 -3179149 - AluSx SINE Alu -30 282 1 1473 166 31 15 chrX 173795013 173795148 -3178992 - AluJo SINE Alu -49 263 121 360 0 0 0 chrX 173795148 173795188 -3178952 + (TA)n Simple_repeat Simple_repeat 2 41 0 1473 166 31 15 chrX 173795188 173795311 -3178829 - AluJo SINE Alu -191 121 1 327 68 0 0 chrX 173795322 173795366 -3178774 - FLAM SINE Alu -8 125 82 317 358 55 30 chrX 173795476 173795677 -3178463 - MIR SINE MIR -31 231 26 1968 163 38 10 chrX 173795851 173796243 -3177897 - MER57A LTR ERV1 0 403 1 2416 28 65 0 chrX 173796721 173797012 -3177128 - AluY SINE Alu -1 310 1 400 170 26 118 chrX 173797970 173798070 -3176070 + MER4A LTR ERV1 3 88 -576 2110 120 3 0 chrX 173798070 173798409 -3175731 - AluSx SINE Alu 0 340 1 400 170 26 118 chrX 173798409 173798459 -3175681 + MER4A LTR ERV1 88 141 -523 602 199 86 94 chrX 173798477 173798733 -3175407 - LTR13 LTR ERVK -753 254 1 643 158 0 0 chrX 173798733 173798828 -3175312 - AluS SINE Alu -217 95 1 583 198 0 0 chrX 173798828 173798939 -3175201 - L1M3 LINE L1 -505 5675 5565 971 131 23 11 chrX 173798987 173799163 -3174977 - Charlie3 DNA MER1_type -9 2701 2524 385 59 191 0 chrX 173799166 173799234 -3174906 - Charlie3 DNA MER1_type -2629 81 1 1237 198 60 35 chrX 173799234 173799553 -3174587 + L1MB5 LINE L1 5838 6164 -10 21 0 0 0 chrX 173799554 173799575 -3174565 + AT_rich Low_complexity Low_complexity 1 21 0 1402 207 43 20 chrX 173799805 173800104 -3174036 + AluJo SINE Alu 1 306 -6 233 307 72 30 chrX 173800257 173800423 -3173717 - L2 LINE L2 -51 3262 3090 195 100 0 0 chrX 173800781 173800811 -3173329 + (TC)n Simple_repeat Simple_repeat 2 31 0 240 149 0 0 chrX 173801139 173801186 -3172954 + (TATG)n Simple_repeat Simple_repeat 2 48 0 996 177 5 7 chrX 173801201 173801815 -3172325 + (TCCA)n Simple_repeat Simple_repeat 3 787 0 738 131 17 28 chrX 173801856 173802032 -3172108 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 239 261 15 0 chrX 173802035 173802100 -3172040 + (TATG)n Simple_repeat Simple_repeat 2 67 0 198 351 158 12 chrX 173802196 173802367 -3171773 - MIR SINE MIR -51 211 16 43 81 0 0 chrX 173802507 173802606 -3171534 + AT_rich Low_complexity Low_complexity 1 99 0 25 51 0 0 chrX 173803229 173803268 -3170872 + AT_rich Low_complexity Low_complexity 1 39 0 261 119 0 0 chrX 173803955 173803997 -3170143 + (CA)n Simple_repeat Simple_repeat 1 42 0 217 254 0 0 chrX 173804636 173804691 -3169449 + (TA)n Simple_repeat Simple_repeat 1 55 0 1652 190 19 13 chrX 173805262 173805572 -3168568 + AluJo SINE Alu 1 312 0 24 0 0 0 chrX 173805621 173805645 -3168495 + AT_rich Low_complexity Low_complexity 1 24 0 244 0 56 0 chrX 173805982 173806018 -3168122 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1664 152 92 7 chrX 173806025 173806308 -3167832 + AluJb SINE Alu 1 307 -5 317 167 13 0 chrX 173806378 173806456 -3167684 + GA-rich Low_complexity Low_complexity 2 80 0 2203 92 0 3 chrX 173807160 173807471 -3166669 - AluSc SINE Alu 0 310 1 300 322 68 19 chrX 173807475 173807680 -3166460 - L1M4 LINE L1 -845 5301 5087 24 0 0 0 chrX 173808394 173808418 -3165722 + AT_rich Low_complexity Low_complexity 1 24 0 3742 79 118 0 chrX 173808736 173809139 -3165001 + LTR66 LTR ERVL 1 486 -124 216 0 0 0 chrX 173809139 173809163 -3164977 + (TA)n Simple_repeat Simple_repeat 2 25 0 3742 79 118 0 chrX 173809163 173809303 -3164837 + LTR66 LTR ERVL 486 608 -2 19180 165 18 3 chrX 173809320 173812675 -3161465 + HERVL66 LTR ERVL 925 4329 0 3982 100 38 20 chrX 173812675 173813079 -3161061 + LTR66 LTR ERVL 1 421 -189 351 0 0 0 chrX 173813079 173813118 -3161022 + (TG)n Simple_repeat Simple_repeat 2 40 0 3982 100 38 20 chrX 173813118 173813312 -3160828 + LTR66 LTR ERVL 421 610 0 2051 155 0 3 chrX 173813486 173813789 -3160351 + AluJb SINE Alu 9 310 -2 384 324 144 28 chrX 173814732 173815161 -3158979 + L1M4 LINE L1 4549 5027 -1119 21 57 0 0 chrX 173815289 173815324 -3158816 + AT_rich Low_complexity Low_complexity 1 35 0 1382 118 52 38 chrX 173815431 173815718 -3158422 - THE1C LTR MaLR 0 375 85 368 61 0 0 chrX 173815708 173815757 -3158383 - Alu SINE Alu -251 49 1 * 575 148 9 19 chrX 173815780 173815888 -3158252 - THE1C LTR MaLR -268 107 1 24 53 0 0 chrX 173816014 173816052 -3158088 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chrX 173816243 173816274 -3157866 + AT_rich Low_complexity Low_complexity 1 31 0 1273 162 57 40 chrX 173816278 173816525 -3157615 + AluJo SINE Alu 60 310 -2 565 292 162 68 chrX 173816890 173817011 -3157129 + L1M4 LINE L1 2175 2283 -3863 2405 101 3 0 chrX 173817011 173817319 -3156821 + AluSp SINE Alu 1 309 -4 2321 62 0 55 chrX 173817324 173817649 -3156491 + AluY SINE Alu 3 309 -2 565 292 162 68 chrX 173817649 173818730 -3155410 + L1M4 LINE L1 2286 3497 -2649 288 282 94 47 chrX 173818808 173818957 -3155183 + L2 LINE L2 2738 2893 -421 691 168 22 0 chrX 173819024 173819161 -3154979 - L1MA7 LINE L1 -5 6286 6147 22 35 0 0 chrX 173819639 173819668 -3154472 + AT_rich Low_complexity Low_complexity 1 29 0 1643 169 25 0 chrX 173820022 173820306 -3153834 - AluSx SINE Alu -21 291 1 27 49 0 0 chrX 173820975 173821016 -3153124 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chrX 173821373 173821408 -3152732 + AT_rich Low_complexity Low_complexity 1 35 0 398 195 23 8 chrX 173822462 173822590 -3151550 + CT-rich Low_complexity Low_complexity 1 130 0 186 43 0 0 chrX 173823897 173823920 -3150220 + (CA)n Simple_repeat Simple_repeat 1 23 0 2232 115 0 7 chrX 173824073 173824378 -3149762 + AluSx SINE Alu 1 303 -9 672 280 93 21 chrX 173825450 173825601 -3148539 - L1M4 LINE L1 -1230 4916 4777 770 167 0 0 chrX 173825601 173825721 -3148419 - FLAM_A SINE Alu -13 120 1 672 280 93 21 chrX 173825721 173826098 -3148042 - L1M4 LINE L1 -1369 4777 4350 344 240 77 38 chrX 173826118 173826301 -3147839 - L1M4 LINE L1 -2101 4045 3856 1463 189 38 10 chrX 173826590 173826881 -3147259 + AluJo SINE Alu 1 299 -13 1721 100 118 14 chrX 173826882 173827161 -3146979 + AluYa8 SINE Alu 1 308 -2 748 121 35 14 chrX 173827190 173827528 -3146612 + GA-rich Low_complexity Low_complexity 1 344 0 1635 144 4 0 chrX 173827564 173827800 -3146340 - AluSg SINE Alu -73 237 1 868 170 114 1 chrX 173827822 173828027 -3146113 - L1MB1 LINE L1 -287 5902 5691 578 171 16 54 chrX 173828082 173828211 -3145929 + L1MC1 LINE L1 6026 6149 -184 1532 133 54 11 chrX 173828213 173828491 -3145649 - LTR38B LTR ERV1 0 610 321 * 2288 145 18 5 chrX 173828487 173828873 -3145267 - LTR38B LTR ERV1 -219 391 1 872 198 6 11 chrX 173828873 173829055 -3145085 + L1MC1 LINE L1 6148 6328 -5 407 148 62 16 chrX 173829915 173830228 -3143912 + (TCTA)n Simple_repeat Simple_repeat 1 327 0 29 0 0 0 chrX 173830270 173830299 -3143841 + AT_rich Low_complexity Low_complexity 1 29 0 228 312 71 21 chrX 173831207 173831348 -3142792 + MIR SINE MIR 91 238 -24 201 220 0 40 chrX 173831640 173831690 -3142450 + (TATG)n Simple_repeat Simple_repeat 1 48 0 * 211 294 0 0 chrX 173831657 173831725 -3142415 + (TA)n Simple_repeat Simple_repeat 2 69 0 217 182 15 15 chrX 173831757 173831823 -3142317 + (TA)n Simple_repeat Simple_repeat 2 67 0 277 229 29 6 chrX 173831879 173832055 -3142085 + (TA)n Simple_repeat Simple_repeat 1 180 0 357 273 0 37 chrX 173832131 173832318 -3141822 + (TA)n Simple_repeat Simple_repeat 1 180 0 363 261 7 14 chrX 173832423 173832561 -3141579 + (TA)n Simple_repeat Simple_repeat 2 138 0 219 139 0 0 chrX 173832600 173832636 -3141504 + (TA)n Simple_repeat Simple_repeat 1 36 0 223 191 0 21 chrX 173832671 173832718 -3141422 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1868 142 10 10 chrX 173832726 173833021 -3141119 - AluSx SINE Alu -17 295 1 227 234 78 0 chrX 173833070 173833147 -3140993 - LTR50 LTR ERVL 0 795 713 234 0 0 0 chrX 173834049 173834075 -3140065 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 378 0 0 0 chrX 173834074 173834116 -3140024 + (CA)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chrX 173834318 173834343 -3139797 + AT_rich Low_complexity Low_complexity 1 25 0 2913 177 47 31 chrX 173834345 173834990 -3139150 - LTR8A LTR ERV1 -60 667 13 1579 150 64 16 chrX 173835204 173835517 -3138623 + MER4A LTR ERV1 1 328 -336 23 0 0 0 chrX 173835583 173835606 -3138534 + AT_rich Low_complexity Low_complexity 1 23 0 359 143 16 16 chrX 173835683 173835746 -3138394 + MER4C LTR ERV1 294 356 -109 5299 90 6 44 chrX 173836343 173837176 -3136964 + L1PB1 LINE L1 5353 6149 -2 220 229 24 0 chrX 173837318 173837401 -3136739 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 2489 89 15 36 chrX 173838303 173838485 -3135655 - L1PB1 LINE L1 -5 6146 5962 2414 89 0 3 chrX 173838485 173838798 -3135342 - AluSx SINE Alu 0 312 1 2489 89 15 36 chrX 173838798 173839006 -3135134 - L1PB1 LINE L1 -189 5962 5764 1750 90 43 0 chrX 173839048 173839304 -3134836 - L1PB1 LINE L1 -360 5791 5525 279 0 0 0 chrX 173841320 173841351 -3132789 + (CA)n Simple_repeat Simple_repeat 2 32 0 2296 103 0 3 chrX 173841793 173842104 -3132036 + AluSq SINE Alu 1 310 -3 53 40 0 0 chrX 173842758 173842832 -3131308 + AT_rich Low_complexity Low_complexity 1 74 0 3069 168 27 14 chrX 173842905 173843095 -3131045 - L1MB3 LINE L1 -19 6164 5978 4988 75 6 3 chrX 173843095 173843753 -3130387 + PABL_A LTR ERV1 1 660 0 3069 168 27 14 chrX 173843753 173844188 -3129952 - L1MB3 LINE L1 -205 5978 5531 3781 49 0 0 chrX 173844188 173844653 -3129487 + L1PA5 LINE L1 5683 6150 -4 401 190 0 13 chrX 173844682 173844761 -3129379 - L1MB3 LINE L1 -646 5528 5451 2097 118 3 10 chrX 173844792 173845096 -3129044 + AluSx SINE Alu 1 302 -10 378 0 0 0 chrX 173845153 173845195 -3128945 + (TG)n Simple_repeat Simple_repeat 1 42 0 181 125 94 0 chrX 173845448 173845480 -3128660 - MER5C DNA MER1_type -199 125 91 238 284 81 0 chrX 173845582 173845656 -3128484 - L2 LINE L2 0 3272 3193 1627 168 3 56 chrX 173845955 173846259 -3127881 + AluJo SINE Alu 3 290 -22 279 226 36 14 chrX 173846595 173846678 -3127462 - L1MB3 LINE L1 -689 5462 5391 1832 159 0 28 chrX 173846678 173846999 -3127141 - AluSx SINE Alu 0 312 1 279 0 0 0 chrX 173847006 173847037 -3127103 + (TTA)n Simple_repeat Simple_repeat 3 33 0 25 75 0 0 chrX 173847138 173847191 -3126949 + AT_rich Low_complexity Low_complexity 1 53 0 21 36 0 0 chrX 173847425 173847453 -3126687 + AT_rich Low_complexity Low_complexity 1 28 0 1078 281 201 14 chrX 173848060 173848577 -3125563 - MLT1E2 LTR MaLR -12 614 1 351 192 0 0 chrX 173848636 173848709 -3125431 + (ATG)n Simple_repeat Simple_repeat 1 73 0 892 155 3 14 chrX 173848731 173849100 -3125040 + (ATG)n Simple_repeat Simple_repeat 1 364 0 209 222 32 0 chrX 173849742 173849805 -3124335 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 423 0 0 0 chrX 173849826 173849873 -3124267 + (CA)n Simple_repeat Simple_repeat 2 48 0 2206 113 30 54 chrX 173849908 173850278 -3123862 + THE1B LTR MaLR 1 361 -3 1928 144 7 0 chrX 173850278 173850555 -3123585 - AluSx SINE Alu -33 279 1 404 100 39 56 chrX 173851443 173851623 -3122517 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 339 177 48 8 chrX 173851623 173851747 -3122393 + (TA)n Simple_repeat Simple_repeat 1 129 0 2051 134 3 3 chrX 173851758 173852049 -3122091 - AluSx SINE Alu -21 291 1 745 172 9 0 chrX 173852359 173852475 -3121665 + FLAM_C SINE Alu 1 117 -16 198 0 0 0 chrX 173852503 173852525 -3121615 + (TG)n Simple_repeat Simple_repeat 2 23 0 456 263 0 43 chrX 173852684 173852870 -3121270 + CT-rich Low_complexity Low_complexity 3 180 0 217 189 0 19 chrX 173852898 173852951 -3121189 + T-rich Low_complexity Low_complexity 3 54 0 300 221 0 15 chrX 173853145 173853213 -3120927 - L1MC4 LINE L1 -1340 6702 6636 1120 165 0 0 chrX 173853213 173853383 -3120757 + AluJb SINE Alu 133 302 -10 1792 148 0 7 chrX 173853415 173853705 -3120435 - LTR51 LTR ERV1 0 671 384 324 176 0 0 chrX 173853706 173853774 -3120366 + (ATG)n Simple_repeat Simple_repeat 1 68 0 2099 155 57 5 chrX 173853777 173854144 -3119996 - LTR51 LTR ERV1 -285 386 1 2055 111 0 11 chrX 173854239 173854519 -3119621 + AluSx SINE Alu 24 300 -12 2037 136 7 13 chrX 173855752 173856061 -3118079 - AluSx SINE Alu -5 307 1 258 287 172 25 chrX 173856105 173856227 -3117913 - L2 LINE L2 -4 3309 3170 963 254 9 0 chrX 173856299 173856516 -3117624 + MER58A DNA MER1_type 6 224 0 229 270 35 43 chrX 173856529 173856644 -3117496 - L2 LINE L2 -233 3080 2967 1985 234 52 74 chrX 173856829 173857459 -3116681 - L1MD2 LINE L1 -16 6343 5730 1736 157 7 27 chrX 173857459 173857758 -3116382 - AluJb SINE Alu -19 293 1 1985 234 52 74 chrX 173857758 173857872 -3116268 - L1MD2 LINE L1 -629 5730 5615 30 27 0 0 chrX 173858146 173858183 -3115957 + AT_rich Low_complexity Low_complexity 1 37 0 3198 95 101 141 chrX 173859008 173859723 -3114417 + LTR12 LTR ERV1 1 686 -2 866 65 73 16 chrX 173859725 173859864 -3114276 + LTR12 LTR ERV1 270 713 -1 1728 184 0 14 chrX 173859938 173860231 -3113909 + AluJo SINE Alu 1 289 -23 639 208 0 0 chrX 173861479 173861609 -3112531 - FLAM_C SINE Alu -13 130 1 26 30 0 0 chrX 173861806 173861839 -3112301 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chrX 173862455 173862481 -3111659 + AT_rich Low_complexity Low_complexity 1 26 0 2319 87 3 10 chrX 173862487 173862796 -3111344 + AluY SINE Alu 3 309 -2 366 23 0 0 chrX 173863232 173863275 -3110865 + (CA)n Simple_repeat Simple_repeat 2 44 0 1673 172 26 20 chrX 173863554 173863856 -3110284 - AluJb SINE Alu -8 304 1 5181 125 44 18 chrX 173864248 173865128 -3109012 - MER4D LTR ERV1 0 903 1 2846 157 28 87 chrX 173865233 173865386 -3108754 + MER51D LTR ERV1 10 171 -486 2487 53 0 3 chrX 173865386 173865686 -3108454 + AluY SINE Alu 1 299 -12 2846 157 28 87 chrX 173865686 173866221 -3107919 + MER51D LTR ERV1 171 657 0 269 135 19 0 chrX 173866239 173866291 -3107849 + CT-rich Low_complexity Low_complexity 2 54 0 201 339 0 0 chrX 173866752 173866811 -3107329 + L2 LINE L2 3240 3298 -15 830 157 0 0 chrX 173867423 173867544 -3106596 + FLAM_C SINE Alu 2 122 -11 192 77 0 0 chrX 173867544 173867570 -3106570 + (CAGT)n Simple_repeat Simple_repeat 4 29 0 369 163 0 93 chrX 173867969 173868055 -3106085 + MER51D LTR ERV1 119 196 -461 1827 164 18 0 chrX 173868223 173868509 -3105631 + AluSx SINE Alu 4 294 -18 215 289 53 0 chrX 173868891 173868967 -3105173 + L2 LINE L2 3225 3304 -9 1729 163 4 7 chrX 173869280 173869556 -3104584 + AluJo SINE Alu 1 275 -37 425 196 14 28 chrX 173869557 173869700 -3104440 + GA-rich Low_complexity Low_complexity 4 144 0 2074 192 166 34 chrX 173870278 173871008 -3103132 - LTR1B LTR ERV1 0 826 1 2023 133 7 0 chrX 173871098 173871383 -3102757 + AluSq SINE Alu 4 290 -23 210 37 0 0 chrX 173871386 173871413 -3102727 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 637 168 0 0 chrX 173871426 173871533 -3102607 + FLAM_C SINE Alu 3 109 -34 27 29 0 0 chrX 173871533 173871567 -3102573 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chrX 173871890 173871922 -3102218 + AT_rich Low_complexity Low_complexity 1 32 0 1693 183 24 0 chrX 173872056 173872345 -3101795 + AluJb SINE Alu 6 301 -11 797 226 37 5 chrX 173872830 173873016 -3101124 + MER3 DNA MER1_type 1 192 -17 2697 128 32 40 chrX 173873016 173873612 -3100528 + MER4E LTR ERV1 1 779 0 3877 117 14 0 chrX 173873700 173874257 -3099883 - MER61E LTR ERV1 -4 565 1 1208 114 0 0 chrX 173874616 173874782 -3099358 - LTR8 LTR ERV1 0 691 526 1615 132 15 48 chrX 173874820 173875093 -3099047 - AluSx SINE Alu 0 312 49 559 189 0 0 chrX 173875097 173875187 -3098953 - AluS SINE Alu -222 90 1 2082 204 14 85 chrX 173875188 173875763 -3098377 - LTR8 LTR ERV1 -157 534 1 2538 50 0 7 chrX 173877176 173877477 -3096663 - AluY SINE Alu -12 299 1 3073 109 2 0 chrX 173877574 173878006 -3096134 + MER57B LTR ERV1 2 434 0 21 57 0 0 chrX 173878319 173878354 -3095786 + AT_rich Low_complexity Low_complexity 1 35 0 297 75 0 0 chrX 173878485 173878525 -3095615 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 469 120 34 46 chrX 173879010 173879185 -3094955 + (TCTA)n Simple_repeat Simple_repeat 1 173 0 834 327 28 13 chrX 173879255 173879653 -3094487 - L1MC4a LINE L1 -1968 5840 5437 488 59 15 0 chrX 173879667 173879735 -3094405 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 375 314 134 28 chrX 173879736 173880019 -3094121 - L1MC4a LINE L1 -1027 5119 4807 234 243 54 0 chrX 173880285 173880359 -3093781 + LTR33 LTR ERVL 435 512 -9 1680 161 9 24 chrX 173880711 173881040 -3093100 - L1MA8 LINE L1 -3 6288 5965 2609 7 0 0 chrX 173881330 173881612 -3092528 + AluYa5 SINE Alu 22 303 -8 456 349 0 0 chrX 173881836 173881982 -3092158 - L3 LINE CR1 -382 1195 1050 456 360 129 33 chrX 173882080 173882475 -3091665 - L3 LINE CR1 -742 835 403 271 184 0 18 chrX 173882583 173882697 -3091443 + (TA)n Simple_repeat Simple_repeat 1 112 0 1802 157 78 23 chrX 173883194 173883539 -3090601 - THE1B LTR MaLR 0 364 1 273 336 0 22 chrX 173884021 173884155 -3089985 + L1ME1 LINE L1 1441 1571 -4825 902 277 38 47 chrX 173884183 173884713 -3089427 - L1MC4a LINE L1 -3400 2746 2222 1048 135 0 59 chrX 173884727 173884897 -3089243 - FRAM SINE Alu -20 156 1 590 268 39 14 chrX 173885101 173885385 -3088755 + L1ME1 LINE L1 2868 3158 -3057 345 47 0 0 chrX 173885492 173885535 -3088605 + (CA)n Simple_repeat Simple_repeat 2 44 0 412 253 14 91 chrX 173885543 173885764 -3088376 + L1MD3 LINE L1 7787 7990 -5 283 304 59 37 chrX 173886198 173886573 -3087567 + L1ME1 LINE L1 4992 5374 -841 1412 278 74 34 chrX 173886627 173886817 -3087323 + L1ME1 LINE L1 5426 5607 -628 1926 141 31 0 chrX 173886817 173887107 -3087033 - AluSx SINE Alu -12 300 2 1412 278 74 34 chrX 173887107 173887618 -3086522 + L1ME1 LINE L1 5607 6155 -80 370 191 99 15 chrX 173887641 173887772 -3086368 - L1M4 LINE L1 -2909 3237 3096 366 276 40 55 chrX 173887785 173887891 -3086249 - L1M4 LINE L1 -3007 3139 3036 2140 114 44 33 chrX 173887891 173888251 -3085889 + THE1B LTR MaLR 1 364 0 366 276 40 55 chrX 173888251 173888343 -3085797 - L1M4 LINE L1 -3110 3036 2944 318 273 12 19 chrX 173888416 173888577 -3085563 + (TA)n Simple_repeat Simple_repeat 1 160 0 453 36 0 0 chrX 173888679 173888734 -3085406 + (TA)n Simple_repeat Simple_repeat 2 56 0 578 313 36 60 chrX 173888980 173889354 -3084786 + L1ME2 LINE L1 5741 6106 -58 2471 98 27 11 chrX 173889354 173889723 -3084417 + THE1C LTR MaLR 1 375 0 578 313 36 60 chrX 173889723 173889763 -3084377 + L1ME2 LINE L1 6106 6145 -19 1999 123 14 10 chrX 173890777 173891070 -3083070 + THE1B LTR MaLR 68 361 -3 320 249 50 86 chrX 173891402 173891623 -3082517 - L1MC5 LINE L1 -438 7523 7311 2652 46 0 0 chrX 173892403 173892708 -3081432 + AluY SINE Alu 1 305 -6 220 224 15 0 chrX 173892901 173892968 -3081172 + (TTAA)n Simple_repeat Simple_repeat 3 70 0 1713 176 13 0 chrX 173893390 173893691 -3080449 + L1PA16 LINE L1 5729 6033 -133 1154 158 49 25 chrX 173893691 173893894 -3080246 - THE1B LTR MaLR 0 364 157 237 132 44 22 chrX 173894817 173894908 -3079232 + (TA)n Simple_repeat Simple_repeat 1 93 0 73 79 0 0 chrX 173894914 173895054 -3079086 + AT_rich Low_complexity Low_complexity 1 140 0 337 253 0 77 chrX 173895431 173895625 -3078515 + T-rich Low_complexity Low_complexity 2 180 0 * 361 229 29 34 chrX 173895480 173895655 -3078485 + (TTG)n Simple_repeat Simple_repeat 2 175 0 204 135 32 40 chrX 173896189 173896315 -3077825 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 302 138 52 23 chrX 173896325 173896499 -3077641 + (TA)n Simple_repeat Simple_repeat 2 180 0 198 149 27 14 chrX 173896627 173896701 -3077439 + (TA)n Simple_repeat Simple_repeat 2 76 0 200 197 34 14 chrX 173896731 173896878 -3077262 + (TA)n Simple_repeat Simple_repeat 2 151 0 2303 68 0 3 chrX 173896917 173897209 -3076931 + AluY SINE Alu 1 291 -20 1231 138 63 25 chrX 173897568 173897807 -3076333 + LTR29 LTR ERV1 140 387 -235 808 247 233 31 chrX 173898505 173898763 -3075377 - L1MD2 LINE L1 -21 6836 6631 2616 101 3 6 chrX 173898763 173899128 -3075012 + THE1B LTR MaLR 1 364 0 808 247 233 31 chrX 173899128 173899350 -3074790 - L1MD2 LINE L1 -226 6631 6259 1502 209 3 7 chrX 173899413 173899715 -3074425 - AluJb SINE Alu -11 301 1 341 120 8 51 chrX 173900091 173900208 -3073932 + (TA)n Simple_repeat Simple_repeat 2 113 0 496 282 86 48 chrX 173900249 173900540 -3073600 - MLT1L LTR MaLR -5 610 309 1624 196 0 24 chrX 173900776 173901090 -3073050 - AluJb SINE Alu 0 307 1 184 171 49 16 chrX 173901349 173901472 -3072668 + (TA)n Simple_repeat Simple_repeat 2 128 0 22 35 0 0 chrX 173901677 173901706 -3072434 + AT_rich Low_complexity Low_complexity 1 29 0 274 200 156 37 chrX 173902018 173902153 -3071987 - L1MD2 LINE L1 -2295 6011 5861 2552 261 51 44 chrX 173902878 173904015 -3070125 - L1MD2 LINE L1 -2345 4299 3155 1189 261 28 59 chrX 173904024 173904450 -3069690 - L1MD2 LINE L1 -6105 437 25 221 200 0 18 chrX 173904464 173904519 -3069621 + T-rich Low_complexity Low_complexity 1 54 0 2113 183 6 8 chrX 173904670 173905036 -3069104 + MLT1A1 LTR MaLR 1 365 0 1190 309 64 8 chrX 173905074 173905856 -3068284 - L1ME LINE L1 -3174 2906 2081 22 94 0 0 chrX 173905887 173905951 -3068189 + AT_rich Low_complexity Low_complexity 1 64 0 392 300 125 44 chrX 173906216 173906708 -3067432 - L1ME LINE L1 -4549 1531 1056 297 265 19 45 chrX 173906730 173906928 -3067212 - L1ME LINE L1 -5030 1040 839 22 56 0 0 chrX 173907124 173907160 -3066980 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chrX 173907487 173907529 -3066611 + AT_rich Low_complexity Low_complexity 1 42 0 751 167 0 0 chrX 173907529 173907649 -3066491 - FLAM_C SINE Alu -11 122 3 542 262 152 0 chrX 173908013 173908177 -3065963 + MER58A DNA MER1_type 1 189 -35 1182 262 131 22 chrX 173908295 173908700 -3065440 + MLT1E2 LTR MaLR 138 586 -40 2399 115 25 0 chrX 173908891 173909247 -3064893 + L1PA16 LINE L1 5793 6157 -9 340 154 53 28 chrX 173909775 173910028 -3064112 + (TAGA)n Simple_repeat Simple_repeat 1 259 0 470 120 82 0 chrX 173910095 173910331 -3063809 + (TAGA)n Simple_repeat Simple_repeat 1 255 0 180 0 0 0 chrX 173910969 173910989 -3063151 + (TTTTC)n Simple_repeat Simple_repeat 1 20 0 1483 184 4 8 chrX 173910992 173911253 -3062887 - AluJo SINE Alu -38 274 15 2541 93 31 6 chrX 173911722 173912077 -3062063 - THE1B LTR MaLR 0 364 1 1118 195 108 70 chrX 173912361 173912648 -3061492 - AluJo SINE Alu -3 299 2 192 217 0 0 chrX 173912822 173912868 -3061272 + CT-rich Low_complexity Low_complexity 2 47 0 1622 138 113 14 chrX 173913021 173913303 -3060837 + AluSg SINE Alu 1 310 0 1654 175 3 28 chrX 173914194 173914516 -3059624 + AluJo SINE Alu 1 315 0 1815 153 22 26 chrX 173915794 173916107 -3058033 + AluJo SINE Alu 1 312 0 2192 74 3 7 chrX 173916733 173917017 -3057123 - AluSg SINE Alu 0 310 28 1439 155 16 0 chrX 173917213 173917471 -3056669 - L1PA16 LINE L1 -22 6144 5883 3630 158 17 8 chrX 173918210 173918860 -3055280 + MER50 LTR ERV1 56 711 -23 2591 100 5 26 chrX 173918908 173919289 -3054851 + THE1C LTR MaLR 3 375 0 723 257 9 36 chrX 173919360 173919582 -3054558 - MER20 DNA MER1_type -3 216 1 237 304 59 29 chrX 173919583 173919685 -3054455 + L2 LINE L2 3197 3301 -12 486 368 103 13 chrX 173920537 173920991 -3053149 - L2 LINE L2 -534 2780 2286 31 26 0 0 chrX 173921011 173921049 -3053091 + AT_rich Low_complexity Low_complexity 1 38 0 1094 206 23 0 chrX 173921070 173921332 -3052808 - L1MA3 LINE L1 0 6305 6038 243 152 0 0 chrX 173921382 173921428 -3052712 + (TG)n Simple_repeat Simple_repeat 1 46 0 316 298 38 100 chrX 173921548 173921793 -3052347 + L1MC4a LINE L1 5670 5889 -232 1832 193 107 5 chrX 173921793 173922212 -3051928 - MLT2C2 LTR ERVL 0 464 3 316 298 38 100 chrX 173922212 173922332 -3051808 + L1MC4a LINE L1 5889 6015 -106 1971 116 23 20 chrX 173922952 173923253 -3050887 - AluSc SINE Alu -5 304 3 24 96 0 0 chrX 173923322 173923395 -3050745 + AT_rich Low_complexity Low_complexity 1 73 0 918 109 33 51 chrX 173923663 173923852 -3050288 - THE1C LTR MaLR 0 375 203 634 85 0 11 chrX 173923851 173923945 -3050195 - THE1C LTR MaLR -335 93 1 * 21 0 0 0 chrX 173924025 173924046 -3050094 + AT_rich Low_complexity Low_complexity 1 21 0 1227 240 14 35 chrX 173924424 173924712 -3049428 - AluJo SINE Alu -30 282 1 367 275 34 60 chrX 173924723 173924774 -3049366 + L1ME LINE L1 5562 5613 -508 2172 110 0 41 chrX 173924774 173925093 -3049047 - AluSx SINE Alu -6 306 1 367 275 34 60 chrX 173925093 173925190 -3048950 + L1ME LINE L1 5613 5706 -415 303 192 0 0 chrX 173925350 173925423 -3048717 + GA-rich Low_complexity Low_complexity 2 74 0 2127 137 22 6 chrX 173925602 173925960 -3048180 - MLT1A1 LTR MaLR -1 364 1 2514 116 83 5 chrX 173927119 173927516 -3046624 - MSTA LTR MaLR 0 428 1 23 0 0 0 chrX 173929297 173929320 -3044820 + AT_rich Low_complexity Low_complexity 1 23 0 1615 199 10 7 chrX 173929801 173930097 -3044043 - AluJo SINE Alu -15 297 1 1789 101 41 48 chrX 173930317 173930585 -3043555 + AluSq SINE Alu 24 289 -24 246 105 0 0 chrX 173930793 173930831 -3043309 + (TG)n Simple_repeat Simple_repeat 2 39 0 2559 108 3 3 chrX 173930831 173931192 -3042948 + THE1B LTR MaLR 4 364 0 429 20 0 0 chrX 173931192 173931242 -3042898 + (TG)n Simple_repeat Simple_repeat 2 51 0 243 171 49 24 chrX 173932018 173932100 -3042040 + (TCTA)n Simple_repeat Simple_repeat 2 85 0 1060 183 0 0 chrX 173932299 173932474 -3041666 + AluJb SINE Alu 122 296 -16 2687 85 3 0 chrX 173932778 173933132 -3041008 + THE1A LTR MaLR 1 355 0 2112 116 10 0 chrX 173933419 173933713 -3040427 + AluSx SINE Alu 13 309 -3 1864 181 0 3 chrX 173934418 173934722 -3039418 + AluJo SINE Alu 3 305 -7 2030 135 10 0 chrX 173934795 173935083 -3039057 + AluSx SINE Alu 1 291 -21 853 131 14 7 chrX 173935303 173935448 -3038692 + Charlie3 DNA MER1_type 2561 2706 -4 4470 164 21 16 chrX 173935691 173936579 -3037561 + MER4D LTR ERV1 1 893 -10 2086 131 3 13 chrX 173936647 173936952 -3037188 + AluSx SINE Alu 1 302 -10 283 246 34 17 chrX 173937808 173937926 -3036214 + (CATATA)n Simple_repeat Simple_repeat 1 120 0 732 330 78 48 chrX 173937931 173938174 -3035966 + L1M4 LINE L1 2737 2971 -3175 2694 176 49 76 chrX 173938174 173938884 -3035256 - LTR8 LTR ERV1 0 691 1 732 330 78 48 chrX 173938884 173939520 -3034620 + L1M4 LINE L1 2971 3643 -2503 3822 121 16 16 chrX 173939521 173940156 -3033984 - MER41B LTR ERV1 0 635 1 596 244 23 23 chrX 173940230 173940406 -3033734 + LTR68 LTR ERV1 19 194 -546 681 194 69 0 chrX 173940589 173940749 -3033391 + LTR68 LTR ERV1 479 649 -91 1030 168 61 61 chrX 173940846 173940924 -3033216 - AluJo SINE Alu -14 298 221 2078 145 0 0 chrX 173940924 173941221 -3032919 - AluSx SINE Alu -15 297 1 1030 168 61 61 chrX 173941221 173941318 -3032822 - AluJo SINE Alu -91 221 120 351 0 0 0 chrX 173941318 173941357 -3032783 + (TA)n Simple_repeat Simple_repeat 2 40 0 1030 168 61 61 chrX 173941357 173941394 -3032746 - AluJo SINE Alu -191 121 85 1667 185 3 7 chrX 173941789 173942091 -3032049 + AluJo SINE Alu 1 301 -11 575 338 81 40 chrX 173942122 173942855 -3031285 + L1M4 LINE L1 4036 4798 -1348 2013 112 42 0 chrX 173943229 173943516 -3030624 + AluSx SINE Alu 1 299 -13 1865 160 0 13 chrX 173944115 173944422 -3029718 - AluJo SINE Alu -3 309 7 2239 111 0 22 chrX 173944517 173944833 -3029307 + AluSx SINE Alu 1 309 -3 1869 156 7 0 chrX 173945363 173945689 -3028451 - AluJb SINE Alu 0 328 1 514 140 0 19 chrX 173945931 173946038 -3028102 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 2356 77 0 3 chrX 173946469 173946767 -3027373 - AluSg SINE Alu -13 297 1 1217 196 0 44 chrX 173947111 173947386 -3026754 - AluJo SINE Alu -10 302 40 198 103 0 0 chrX 173947860 173947889 -3026251 + (TG)n Simple_repeat Simple_repeat 2 30 0 1791 174 23 3 chrX 173948672 173949023 -3025117 - MLT1A1 LTR MaLR -1 364 7 1291 138 46 5 chrX 173949025 173949243 -3024897 + MER30 DNA MER1_type 4 230 0 23 33 0 0 chrX 173950163 173950193 -3023947 + AT_rich Low_complexity Low_complexity 1 30 0 231 351 54 40 chrX 173950276 173950424 -3023716 - L3 LINE CR1 -2 1575 1426 3502 89 26 4 chrX 173950763 173951269 -3022871 + L1PB2 LINE L1 5635 6151 0 288 0 0 0 chrX 173951288 173951320 -3022820 + (TA)n Simple_repeat Simple_repeat 2 33 0 2473 40 3 10 chrX 173951888 173952188 -3021952 - AluY SINE Alu -13 298 1 1824 231 59 12 chrX 173952233 173952304 -3021836 - L1MB5 LINE L1 -39 6135 6069 1772 145 11 11 chrX 173952304 173952621 -3021519 - AluJb SINE Alu 0 317 1 1824 231 59 12 chrX 173952621 173953041 -3021099 - L1MB5 LINE L1 -105 6069 5620 4694 88 25 1 chrX 173953089 173953762 -3020378 + L1PB1 LINE L1 5455 6143 -8 3146 105 6 0 chrX 173954964 173955451 -3018689 - L1MA3 LINE L1 -201 6104 5615 655 259 61 33 chrX 173955632 173956432 -3017708 + L1ME1 LINE L1 2926 3896 -2250 1922 254 44 72 chrX 173956491 173957534 -3016606 + L1ME1 LINE L1 5011 6018 -148 1576 215 10 0 chrX 173957534 173957822 -3016318 - AluJo SINE Alu -21 291 1 1922 254 44 72 chrX 173957822 173957937 -3016203 + L1ME1 LINE L1 6018 6135 -31 21 36 0 0 chrX 173958837 173958865 -3015275 + AT_rich Low_complexity Low_complexity 1 28 0 204 67 0 0 chrX 173960456 173960486 -3013654 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chrX 173961084 173961111 -3013029 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chrX 173961371 173961408 -3012732 + AT_rich Low_complexity Low_complexity 1 37 0 748 167 6 6 chrX 173962231 173962405 -3011735 + CT-rich Low_complexity Low_complexity 1 174 0 502 209 12 11 chrX 173962450 173962715 -3011425 + CT-rich Low_complexity Low_complexity 1 265 0 414 280 155 0 chrX 173962750 173962941 -3011199 + MLT1F LTR MaLR 191 411 -131 4639 51 9 3 chrX 173962941 173963964 -3010176 + MER11A LTR ERVK 1 1266 0 393 277 7 15 chrX 173963965 173964102 -3010038 + MLT1F LTR MaLR 432 567 0 2264 115 0 7 chrX 173964927 173965232 -3008908 - AluSx SINE Alu -9 303 1 370 203 0 13 chrX 173965263 173965342 -3008798 + L1MB3 LINE L1 5451 5528 -646 3952 34 0 0 chrX 173965371 173965839 -3008301 - L1PA5 LINE L1 -4 6150 5683 3029 165 29 14 chrX 173965839 173966271 -3007869 + L1MB3 LINE L1 5531 5979 -204 4998 75 6 3 chrX 173966271 173966929 -3007211 - PABL_A LTR ERV1 0 660 1 3029 165 29 14 chrX 173966929 173967118 -3007022 + L1MB3 LINE L1 5979 6164 -19 240 309 0 15 chrX 173967741 173967809 -3006331 + C-rich Low_complexity Low_complexity 6 72 0 825 161 42 7 chrX 173968065 173968208 -3005932 + FRAM SINE Alu 27 174 -2 1474 253 43 39 chrX 173968212 173968654 -3005486 + LTR8 LTR ERV1 247 690 -1 1631 183 10 10 chrX 173968664 173968953 -3005187 - AluJo SINE Alu -19 293 5 269 237 87 58 chrX 173969198 173969405 -3004735 + L1M4 LINE L1 4361 4573 -1573 2388 152 55 14 chrX 173969776 173970216 -3003924 - LTR29 LTR ERV1 -25 597 140 587 186 69 0 chrX 173970690 173970792 -3003348 - FLAM_C SINE Alu -33 110 2 292 307 79 10 chrX 173971760 173971861 -3002279 + LTR67 LTR ERVL 63 170 -387 352 291 28 22 chrX 173972028 173972207 -3001933 + LTR67 LTR ERVL 372 551 -6 1228 126 0 0 chrX 173972357 173972531 -3001609 - AluJb SINE Alu -11 301 128 232 250 0 13 chrX 173972603 173972679 -3001461 + CT-rich Low_complexity Low_complexity 1 75 0 1235 208 58 3 chrX 173973621 173973914 -3000226 - MER33 DNA MER1_type -15 309 1 1229 178 59 28 chrX 173974073 173974326 -2999814 + LTR8 LTR ERV1 1 261 -430 1867 125 3 36 chrX 174025056 174025356 -2948784 - MER4B LTR ERV1 0 610 321 494 56 113 0 chrX 174025356 174025427 -2948713 + MADE1 DNA Mariner 1 79 -1 * 1710 116 96 20 chrX 174025427 174025727 -2948413 - MER4B LTR ERV1 -287 323 1 184 179 64 0 chrX 174025727 174025805 -2948335 + (TA)n Simple_repeat Simple_repeat 2 84 0 201 205 36 24 chrX 174025836 174025919 -2948221 + (TA)n Simple_repeat Simple_repeat 1 84 0 198 143 0 0 chrX 174026065 174026100 -2948040 + (CA)n Simple_repeat Simple_repeat 2 36 0 249 196 20 0 chrX 174026171 174026222 -2947918 + (CA)n Simple_repeat Simple_repeat 2 53 0 311 332 99 9 chrX 174026559 174026770 -2947370 - L1MC/D LINE L1 -2167 5641 5412 668 294 13 20 chrX 174026825 174027128 -2947012 - AluYa5 SINE Alu 0 301 1 26 0 0 0 chrX 174027199 174027225 -2946915 + AT_rich Low_complexity Low_complexity 1 26 0 248 80 23 57 chrX 174027389 174027477 -2946663 + (TTTTTG)n Simple_repeat Simple_repeat 5 89 0 742 266 27 64 chrX 174027922 174028286 -2945854 + LTR40b LTR ERVL 139 462 0 40 96 0 6 chrX 174028624 174028675 -2945465 + AT_rich Low_complexity Low_complexity 1 51 -104 2314 80 0 19 chrX 174028675 174028987 -2945153 - AluY SINE Alu -5 306 1 40 96 0 6 chrX 174028987 174029091 -2945049 + AT_rich Low_complexity Low_complexity 51 155 0 228 346 16 24 chrX 174029768 174029895 -2944245 - MIR SINE MIR -110 152 27 757 230 14 78 chrX 174030201 174030418 -2943722 + MER8 DNA MER2_type 1 203 -36 302 275 6 22 chrX 174030899 174031077 -2943063 + GA-rich Low_complexity Low_complexity 3 177 0 1178 197 5 0 chrX 174032821 174033039 -2941101 - L1PA15 LINE L1 -5 6160 5942 576 189 33 14 chrX 174033782 174033920 -2940220 - MLT1C LTR MaLR -16 488 330 247 286 15 15 chrX 174034785 174034918 -2939222 - AluSp SINE Alu -170 133 1 478 164 125 31 chrX 174034922 174035050 -2939090 + LOR1b LTR ERV1 32 171 -290 * 978 199 91 14 chrX 174035049 174035270 -2938870 + LOR1a LTR ERV1 260 497 0 3155 102 15 0 chrX 174035495 174035956 -2938184 + L1PA10 LINE L1 5699 6166 -2 2323 145 35 55 chrX 174036350 174036492 -2937648 - MSTC LTR MaLR -2 426 283 1627 177 0 55 chrX 174036492 174036803 -2937337 - AluJo SINE Alu -18 294 1 2323 145 35 55 chrX 174036803 174037095 -2937045 - MSTC LTR MaLR -145 283 1 216 221 52 52 chrX 174037792 174037869 -2936271 - MIR SINE MIR -55 207 131 200 198 49 25 chrX 174038531 174038612 -2935528 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 32 26 0 0 chrX 174038985 174039024 -2935116 + AT_rich Low_complexity Low_complexity 1 39 0 946 137 256 64 chrX 174039062 174039375 -2934765 - MLT1A2 LTR MaLR -1 373 1 24 32 0 0 chrX 174039585 174039616 -2934524 + AT_rich Low_complexity Low_complexity 1 31 0 302 275 6 22 chrX 174040363 174040541 -2933599 + CT-rich Low_complexity Low_complexity 3 177 0 2175 128 53 0 chrX 174041347 174041994 -2932146 - L1P4 LINE L1 -551 5610 4926 1539 263 31 73 chrX 174042045 174043094 -2931046 + L1MA3 LINE L1 2057 6585 0 423 161 0 119 chrX 174043103 174043221 -2930919 + MER61E LTR ERV1 5 108 -461 293 175 143 0 chrX 174043353 174043416 -2930724 + MER51A LTR ERV1 209 280 -354 * 1382 185 83 33 chrX 174043387 174043749 -2930391 + LTR25 LTR ERV1 415 794 0 2206 271 48 16 chrX 174043768 174044526 -2929614 + L1ME LINE L1 2778 3575 -2571 1710 215 18 3 chrX 174044526 174044908 -2929232 - MLT1B LTR MaLR 0 390 3 2206 271 48 16 chrX 174044908 174045112 -2929028 + L1ME LINE L1 3575 3771 -2375 2043 246 35 42 chrX 174045113 174045833 -2928307 + L1ME LINE L1 3665 4379 -1767 240 271 14 0 chrX 174045926 174045996 -2928144 + L1ME LINE L1 5715 5785 -336 251 346 122 19 chrX 174046227 174046383 -2927757 - MIR SINE MIR -76 186 15 186 43 0 0 chrX 174046812 174046835 -2927305 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 274 184 26 0 chrX 174047148 174047224 -2926916 + CT-rich Low_complexity Low_complexity 4 81 0 2433 81 3 0 chrX 174048431 174048739 -2925401 + AluSx SINE Alu 1 309 -3 709 97 0 10 chrX 174049303 174049406 -2924734 + AluJ/FLAM SINE Alu 1 102 -210 576 189 33 14 chrX 174049700 174049838 -2924302 - MLT1C LTR MaLR -16 488 330 1210 186 10 0 chrX 174050165 174050369 -2923771 - AluJb SINE Alu -7 305 100 1278 145 10 10 chrX 174050369 174050576 -2923564 + MLT1A1 LTR MaLR 157 363 -2 279 114 0 0 chrX 174051219 174051263 -2922877 + (CA)n Simple_repeat Simple_repeat 1 44 0 3159 154 11 12 chrX 174051931 174052491 -2921649 + L1MA8 LINE L1 5676 6234 -57 249 88 0 53 chrX 174052727 174052784 -2921356 + L1MA9 LINE L1 6237 6290 -1 210 37 0 0 chrX 174052973 174053000 -2921140 + (TG)n Simple_repeat Simple_repeat 1 27 0 1428 114 8 28 chrX 174054519 174054684 -2919456 - L1MA2 LINE L1 0 6304 6144 2089 134 10 0 chrX 174054684 174054990 -2919150 - AluSx SINE Alu -3 309 1 1428 114 8 28 chrX 174054990 174055078 -2919062 - L1MA2 LINE L1 -160 6144 6056 209 200 0 0 chrX 174055375 174055415 -2918725 + A-rich Low_complexity Low_complexity 2 41 0 2710 97 17 12 chrX 174055995 174056398 -2917742 - L1PB1 LINE L1 -1 6150 5746 3033 95 32 2 chrX 174056792 174057233 -2916907 + L1PA12 LINE L1 5714 6167 -1 260 0 0 54 chrX 174057558 174057595 -2916545 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2138 119 3 0 chrX 174057602 174057896 -2916244 + AluSg SINE Alu 2 296 -14 1460 79 96 4 chrX 174059308 174059537 -2914603 - L1MA2 LINE L1 -227 6077 5828 576 125 7 145 chrX 174059536 174059688 -2914452 + L1MA2 LINE L1 6169 6299 -5 * 234 342 101 25 chrX 174059959 174060117 -2914023 + MIR SINE MIR 20 189 -73 1834 234 43 93 chrX 174060222 174060767 -2913373 - L1ME1 LINE L1 -26 6140 5656 4070 150 95 8 chrX 174060767 174061527 -2912613 + LTR1B LTR ERV1 1 826 0 1834 234 43 93 chrX 174061527 174061870 -2912270 - L1ME1 LINE L1 -510 5656 5297 1187 270 31 24 chrX 174061938 174062353 -2911787 - L1MD3 LINE L1 -59 7936 7519 540 116 49 6 chrX 174062358 174062522 -2911618 + (TAGA)n Simple_repeat Simple_repeat 4 174 0 295 154 31 74 chrX 174062525 174062687 -2911453 + (TATAA)n Simple_repeat Simple_repeat 5 159 0 * 303 174 72 14 chrX 174062585 174062723 -2911417 + (TA)n Simple_repeat Simple_repeat 2 147 0 450 208 25 117 chrX 174062732 174062800 -2911340 - Tigger2 DNA MER2_type 0 2718 2664 2049 118 3 3 chrX 174062800 174063087 -2911053 + AluSx SINE Alu 1 287 -25 450 208 25 117 chrX 174063087 174063138 -2911002 - Tigger2 DNA MER2_type -54 2664 2610 352 172 0 0 chrX 174063138 174063196 -2910944 - Tigger2 DNA MER2_type -2660 58 1 848 283 65 47 chrX 174063371 174063816 -2910324 - LTR40c LTR ERVL -6 459 7 365 307 78 52 chrX 174063852 174064144 -2909996 - L1MCc LINE L1 -5970 453 145 1619 202 40 115 chrX 174064144 174064413 -2909727 - MLT2B3 LTR ERVL 0 554 352 2047 132 0 21 chrX 174064413 174064739 -2909401 + AluSx SINE Alu 1 320 0 1619 202 40 115 chrX 174064739 174065067 -2909073 - MLT2B3 LTR ERVL -202 352 1 365 307 78 52 chrX 174065067 174065198 -2908942 - L1MCc LINE L1 -6278 145 19 490 301 43 12 chrX 174066540 174066703 -2907437 + MER5B DNA MER1_type 6 173 -5 2201 75 7 14 chrX 174066925 174067218 -2906922 - AluSc SINE Alu -18 291 1 2295 96 65 63 chrX 174067430 174067877 -2906263 + LTR7 LTR ERV1 1 448 -2 18262 96 13 37 chrX 174067879 174070937 -2903203 + HERVH LTR ERV1 1 2987 -4726 817 149 20 0 chrX 174070931 174071079 -2903061 + HERVH LTR ERV1 3140 3290 -4423 * 3076 109 20 6 chrX 174071069 174071564 -2902576 + HERVH LTR ERV1 3492 3993 -3720 3972 149 1 3 chrX 174071566 174072229 -2901911 + HERVH LTR ERV1 4488 5149 -2564 1326 104 38 0 chrX 174072230 174072442 -2901698 + HERVH LTR ERV1 5600 5819 -1894 2688 64 5 13 chrX 174072442 174072835 -2901305 + HERVH LTR ERV1 7324 7713 0 2043 116 84 64 chrX 174072835 174073274 -2900866 + LTR7 LTR ERV1 1 448 -2 5417 68 4 1 chrX 174073479 174074168 -2899972 - LTR8 LTR ERV1 0 691 1 1826 182 17 63 chrX 174074296 174074424 -2899716 + L1MA7 LINE L1 5840 5972 -319 2421 66 3 0 chrX 174074424 174074725 -2899415 + AluY SINE Alu 1 302 -9 2458 191 130 20 chrX 174074726 174075380 -2898760 - LTR8A LTR ERV1 0 727 2 1826 182 17 63 chrX 174075380 174075722 -2898418 + L1MA7 LINE L1 5971 6290 -1 34 55 0 0 chrX 174075722 174075777 -2898363 + AT_rich Low_complexity Low_complexity 1 55 0 4064 71 2 42 chrX 174075814 174076391 -2897749 - MER41A LTR ERV1 0 554 1 1151 214 105 3 chrX 174077114 174077399 -2896741 + MER7A DNA MER2_type 35 346 0 503 196 10 0 chrX 174078639 174078736 -2895404 - MER90 LTR ERV1 0 575 478 670 219 38 65 chrX 174078736 174079028 -2895112 + MLT1D LTR MaLR 1 284 -221 293 168 44 7 chrX 174079114 174079251 -2894889 + (TA)n Simple_repeat Simple_repeat 2 143 0 249 205 24 0 chrX 174079294 174079421 -2894719 + (TA)n Simple_repeat Simple_repeat 2 131 0 558 236 7 0 chrX 174079461 174079605 -2894535 - L1MB4 LINE L1 -2 6178 6034 232 96 58 0 chrX 174079609 174079661 -2894479 - L1MB4 LINE L1 -163 6011 5957 1883 119 0 61 chrX 174079823 174080135 -2894005 + AluSx SINE Alu 1 293 -19 312 27 0 0 chrX 174080167 174080204 -2893936 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chrX 174080214 174080237 -2893903 + AT_rich Low_complexity Low_complexity 1 23 0 461 194 19 9 chrX 174080603 174080711 -2893429 - L1MB4 LINE L1 -223 5961 5853 390 239 0 46 chrX 174080722 174080831 -2893309 + L1M3 LINE L1 5521 5624 -556 180 0 0 0 chrX 174080965 174080985 -2893155 + (A)n Simple_repeat Simple_repeat 1 20 0 2310 95 0 0 chrX 174081193 174081488 -2892652 - AluSc SINE Alu -14 295 1 270 226 37 0 chrX 174081684 174081960 -2892180 + (TA)n Simple_repeat Simple_repeat 1 286 0 24 0 0 0 chrX 174081960 174081984 -2892156 + AT_rich Low_complexity Low_complexity 1 24 0 608 193 0 0 chrX 174081998 174082133 -2892007 + L1MB4 LINE L1 6044 6178 -2 382 94 50 38 chrX 174082231 174082390 -2891750 + (TA)n Simple_repeat Simple_repeat 1 161 0 350 256 33 11 chrX 174082390 174082480 -2891660 + L1MC4 LINE L1 6612 6703 -1339 249 260 0 0 chrX 174082487 174082564 -2891576 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 227 361 138 26 chrX 174082774 174083079 -2891061 + L3 LINE CR1 879 1217 -360 1794 180 41 22 chrX 174084128 174084495 -2889645 - MLT1A2 LTR MaLR 0 374 1 431 343 155 20 chrX 174085336 174085847 -2888293 - L2 LINE L2 -2318 996 417 1937 146 13 10 chrX 174086322 174086624 -2887516 + AluSx SINE Alu 1 303 -9 920 203 0 0 chrX 174086625 174086783 -2887357 + AluJo/FRAM SINE Alu 136 293 -19 317 171 0 14 chrX 174086843 174086913 -2887227 + (TA)n Simple_repeat Simple_repeat 1 69 0 450 287 0 0 chrX 174087065 174087173 -2886967 + Tigger3(Golem) DNA MER2_type 2930 3037 0 1967 197 10 3 chrX 174087184 174087569 -2886571 - MER47B DNA MER2_type 0 418 31 1461 169 0 16 chrX 174087733 174087987 -2886153 + AluSx SINE Alu 63 312 0 197 159 23 0 chrX 174087988 174088032 -2886108 + (TA)n Simple_repeat Simple_repeat 2 46 0 211 196 18 27 chrX 174088177 174088289 -2885851 + (TA)n Simple_repeat Simple_repeat 1 111 0 267 103 0 0 chrX 174088289 174088328 -2885812 + (GA)n Simple_repeat Simple_repeat 2 40 0 1777 162 4 0 chrX 174089891 174090157 -2883983 + AluJb SINE Alu 35 301 -11 683 134 0 0 chrX 174090652 174090764 -2883376 + AluSg/x SINE Alu 192 303 -9 1443 261 42 18 chrX 174090903 174091451 -2882689 + L1ME1 LINE L1 5601 6161 -5 901 70 25 13 chrX 174091564 174091721 -2882419 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 439 215 42 3 chrX 174091737 174092049 -2882091 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 781 144 26 17 chrX 174092073 174092417 -2881723 + (TCTA)n Simple_repeat Simple_repeat 1 347 0 206 291 23 58 chrX 174092793 174092850 -2881290 - MIR SINE MIR -114 148 93 2373 74 0 3 chrX 174092850 174093147 -2880993 + AluSg SINE Alu 1 296 -14 206 291 23 58 chrX 174093147 174093175 -2880965 - MIR SINE MIR -169 93 66 681 177 33 6 chrX 174093897 174094078 -2880062 - L1MA7 LINE L1 0 6291 6106 939 149 6 0 chrX 174094081 174094242 -2879898 + L1M2 LINE L1 5531 5692 -599 1837 170 8 24 chrX 174094290 174094311 -2879829 - MLT1A1 LTR MaLR 0 365 345 1718 201 78 91 chrX 174094311 174094872 -2879268 + MLT2B3 LTR ERVL 1 554 0 1837 170 8 24 chrX 174094872 174095221 -2878919 - MLT1A1 LTR MaLR -20 345 1 2629 106 0 8 chrX 174095503 174095870 -2878270 - THE1B LTR MaLR 0 364 1 290 266 37 0 chrX 174095906 174096015 -2878125 - MLT1I LTR MaLR 0 409 297 336 48 0 0 chrX 174096738 174096780 -2877360 + (TG)n Simple_repeat Simple_repeat 1 42 0 344 164 0 0 chrX 174097047 174097108 -2877032 - MADE1 DNA Mariner -2 78 18 296 283 5 38 chrX 174097112 174097296 -2876844 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 462 269 0 6 chrX 174097205 174097376 -2876764 + (TA)n Simple_repeat Simple_repeat 1 170 0 268 254 18 9 chrX 174097389 174097503 -2876637 + (TA)n Simple_repeat Simple_repeat 1 115 0 489 258 6 0 chrX 174097518 174097696 -2876444 + (TA)n Simple_repeat Simple_repeat 2 180 0 382 247 0 48 chrX 174097677 174097863 -2876277 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 * 466 284 6 0 chrX 174097872 174098041 -2876099 + (TA)n Simple_repeat Simple_repeat 1 170 0 1469 200 3 77 chrX 174098045 174098420 -2875720 - MER7A DNA MER2_type 0 346 2 2133 159 77 12 chrX 174098467 174098869 -2875271 + MSTA LTR MaLR 1 428 0 432 158 0 0 chrX 174099515 174099591 -2874549 + CT-rich Low_complexity Low_complexity 3 78 0 1161 82 6 16 chrX 174099593 174099775 -2874365 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2017 115 11 4 chrX 174099775 174100054 -2874086 - AluSq SINE Alu -32 281 1 186 224 0 0 chrX 174100078 174100127 -2874013 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 71 24 0 chrX 174100373 174100415 -2873725 + MADE1 DNA Mariner 1 43 -37 1528 194 61 0 chrX 174100428 174100721 -2873419 - AluSx SINE Alu -1 311 1 1172 197 5 0 chrX 174101159 174101377 -2872763 - L1PA15 LINE L1 -5 6160 5942 234 0 0 0 chrX 174103263 174103289 -2870851 + (TA)n Simple_repeat Simple_repeat 2 27 0 356 129 65 0 chrX 174103570 174103632 -2870508 - AluJ/FLAM SINE Alu -229 73 8 1895 143 16 0 chrX 174103632 174103939 -2870201 + L1PA16 LINE L1 5855 6166 0 632 163 10 0 chrX 174105014 174105112 -2869028 - FLAM_C SINE Alu -32 111 13 1597 153 0 4 chrX 174105835 174106110 -2868030 + L1MC1 LINE L1 6050 6323 -10 213 94 0 0 chrX 174106464 174106496 -2867644 + (TG)n Simple_repeat Simple_repeat 2 33 0 2464 74 3 0 chrX 174106574 174106934 -2867206 + AluY SINE Alu 1 361 0 1870 183 99 2 chrX 174107590 174107984 -2866156 + MSTB1 LTR MaLR 1 432 0 217 265 53 98 chrX 174108097 174108229 -2865911 - MER5A DNA MER1_type -22 167 42 194 358 40 61 chrX 174108107 174108255 -2865885 + MER5A DNA MER1_type 44 188 -1 * 1907 178 30 0 chrX 174108974 174109372 -2864768 + L1MA8 LINE L1 5882 6291 0 28 29 0 0 chrX 174109476 174109511 -2864629 + AT_rich Low_complexity Low_complexity 1 35 0 1220 151 165 62 chrX 174109815 174110087 -2864053 + AluJb SINE Alu 1 300 -2 1190 188 9 75 chrX 174110646 174110696 -2863444 - MLT1A1 LTR MaLR 0 365 313 1904 169 50 14 chrX 174110696 174111058 -2863082 + THE1C LTR MaLR 1 375 0 1190 188 9 75 chrX 174111058 174111326 -2862814 - MLT1A1 LTR MaLR -52 313 68 1603 185 15 0 chrX 174111327 174111657 -2862483 - MER47A DNA MER2_type -1 365 31 426 118 0 15 chrX 174111671 174111739 -2862401 - MLT1A1 LTR MaLR -304 70 4 417 277 15 34 chrX 174112057 174112263 -2861877 - L1ME LINE L1 -454 5777 5576 1626 178 0 44 chrX 174112365 174112686 -2861454 + AluJo SINE Alu 1 307 -5 385 322 61 20 chrX 174112728 174113023 -2861117 - L1ME LINE L1 -2133 4082 3776 1166 78 0 0 chrX 174113026 174113168 -2860972 - AluSp/q SINE Alu -16 297 156 201 74 0 0 chrX 174113274 174113301 -2860839 + (T)n Simple_repeat Simple_repeat 1 27 0 457 280 63 68 chrX 174113489 174113770 -2860370 - L1ME LINE L1 -2806 3409 3154 1743 198 0 3 chrX 174113770 174114073 -2860067 - AluJb SINE Alu -10 302 1 457 280 63 68 chrX 174114073 174114351 -2859789 - L1ME LINE L1 -3061 3154 2876 693 259 94 27 chrX 174114911 174115285 -2858855 + MER50 LTR ERV1 10 408 -326 1583 214 0 10 chrX 174115907 174116216 -2857924 + AluJo SINE Alu 1 306 -6 740 161 0 23 chrX 174117085 174117215 -2856925 + FRAM SINE Alu 47 173 -3 445 152 25 0 chrX 174117220 174117299 -2856841 + AluJo SINE Alu 56 136 -176 204 143 0 0 chrX 174120551 174120593 -2853547 + (TA)n Simple_repeat Simple_repeat 2 43 0 381 192 58 17 chrX 174120638 174120810 -2853330 + (TA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chrX 174121719 174121741 -2852399 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chrX 174121869 174121911 -2852229 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chrX 174121968 174121989 -2852151 + AT_rich Low_complexity Low_complexity 1 21 0 2585 260 50 83 chrX 174122063 174124298 -2849842 - L1MEc LINE L1 -3379 2836 718 1021 270 39 32 chrX 174124305 174124363 -2849777 + L1M4 LINE L1 2692 2748 -3398 1984 142 53 11 chrX 174124363 174124723 -2849417 - THE1C LTR MaLR 0 375 1 1021 270 39 32 chrX 174124723 174125130 -2849010 + L1M4 LINE L1 2748 3160 -2986 3248 104 16 22 chrX 174125525 174126035 -2848105 + MER84 LTR ERV1 1 507 0 2224 104 0 7 chrX 174126333 174126641 -2847499 + AluSc SINE Alu 3 308 -1 202 325 12 0 chrX 174126701 174126784 -2847356 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 * 207 232 0 18 chrX 174126729 174126785 -2847355 + (TA)n Simple_repeat Simple_repeat 2 56 0 248 200 24 24 chrX 174126786 174126871 -2847269 - L1MC4 LINE L1 -1339 6703 6619 299 269 11 0 chrX 174128087 174128180 -2845960 + (TG)n Simple_repeat Simple_repeat 1 94 0 2764 162 44 29 chrX 174128209 174128796 -2845344 + LTR8A LTR ERV1 11 606 -121 3842 119 22 10 chrX 174128796 174129394 -2844746 - MER41B LTR ERV1 0 635 31 414 198 139 30 chrX 174129394 174129495 -2844645 + AluJb SINE Alu 177 288 -24 288 75 19 0 chrX 174129620 174129673 -2844467 - L1MB3 LINE L1 -2 6181 6128 2040 139 3 3 chrX 174129705 174130015 -2844125 - AluSx SINE Alu -2 310 1 1201 174 34 65 chrX 174130015 174130309 -2843831 - L1MB3 LINE L1 -41 6142 5858 1157 231 22 19 chrX 174130499 174130815 -2843325 - MLT1C LTR MaLR -2 465 149 2612 79 3 0 chrX 174130815 174131158 -2842982 - L1PB1 LINE L1 -25 6126 5783 861 220 0 0 chrX 174131159 174131336 -2842804 - MLT1C LTR MaLR -288 179 3 1301 148 65 0 chrX 174131419 174131635 -2842505 - MER30 DNA MER1_type 0 230 1 225 276 9 95 chrX 174132009 174132125 -2842015 - MIR SINE MIR -70 192 87 2187 106 0 0 chrX 174132375 174132657 -2841483 - AluSx SINE Alu -30 282 1 784 221 48 42 chrX 174133119 174133823 -2840317 - L1MA4A LINE L1 0 6180 5597 1795 192 0 3 chrX 174133823 174134135 -2840005 - AluJb SINE Alu 0 312 2 2217 93 17 0 chrX 174134200 174134491 -2839649 + AluSx SINE Alu 1 296 -16 563 227 13 18 chrX 174135275 174135816 -2838324 + CT-rich Low_complexity Low_complexity 1 538 0 25 0 0 0 chrX 174137318 174137343 -2836797 + AT_rich Low_complexity Low_complexity 1 25 0 288 0 0 0 chrX 174137676 174137708 -2836432 + (CA)n Simple_repeat Simple_repeat 1 32 0 347 189 8 28 chrX 174138033 174138171 -2835969 + CT-rich Low_complexity Low_complexity 1 135 0 1623 139 8 11 chrX 174138336 174138602 -2835538 - AluJb SINE Alu -20 292 28 32 0 0 0 chrX 174138605 174138637 -2835503 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chrX 174139106 174139136 -2835004 + AT_rich Low_complexity Low_complexity 1 30 0 201 132 0 0 chrX 174139160 174139198 -2834942 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 1909 118 59 0 chrX 174139681 174140012 -2834128 + AluSx SINE Alu 1 347 0 322 371 40 7 chrX 174140565 174140716 -2833424 - MIR SINE MIR -12 250 95 1760 249 56 6 chrX 174141092 174141573 -2832567 + MLT1D LTR MaLR 1 505 0 1612 199 3 10 chrX 174141972 174142032 -2832108 - AluJo SINE Alu 0 593 534 1185 0 22 39 chrX 174142032 174142214 -2831926 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1612 199 3 10 chrX 174142214 174142567 -2831573 - AluJo SINE Alu -59 534 1 497 293 21 21 chrX 174142653 174142841 -2831299 - MER5A DNA MER1_type 0 189 2 673 202 6 52 chrX 174142925 174143098 -2831042 + MER20 DNA MER1_type 30 194 -25 444 107 13 0 chrX 174144970 174145045 -2829095 + L1PB3 LINE L1 6070 6145 -9 570 29 0 0 chrX 174145045 174145113 -2829027 + (TA)n Simple_repeat Simple_repeat 2 69 0 242 269 43 21 chrX 174147203 174147296 -2826844 + LTR51 LTR ERV1 281 375 -296 888 136 17 11 chrX 174148350 174148526 -2825614 + CT-rich Low_complexity Low_complexity 3 179 0 931 144 6 6 chrX 174148572 174148745 -2825395 + CT-rich Low_complexity Low_complexity 4 176 0 1553 181 0 24 chrX 174148754 174149041 -2825099 - AluJo SINE Alu -32 280 1 744 226 44 58 chrX 174149044 174149414 -2824726 + LTR52 LTR ERVL 17 415 -6 316 332 63 35 chrX 174149442 174149728 -2824412 - MLT1L LTR MaLR -321 294 1 336 48 0 0 chrX 174150543 174150585 -2823555 + (CA)n Simple_repeat Simple_repeat 1 42 0 320 266 37 0 chrX 174151308 174151417 -2822723 + MLT1I LTR MaLR 297 409 0 2621 106 0 8 chrX 174151453 174151820 -2822320 + THE1B LTR MaLR 1 364 0 1989 167 8 24 chrX 174152102 174152451 -2821689 + MLT1A1 LTR MaLR 1 345 -20 1732 201 76 92 chrX 174152451 174153014 -2821126 - MLT2B3 LTR ERVL 0 554 1 1989 167 8 24 chrX 174153014 174153035 -2821105 + MLT1A1 LTR MaLR 345 365 0 990 149 6 0 chrX 174153083 174153244 -2820896 - L1M2 LINE L1 -599 5692 5531 704 177 33 6 chrX 174153247 174153428 -2820712 + L1MA7 LINE L1 6106 6291 0 2269 92 3 0 chrX 174154178 174154471 -2819669 - AluY SINE Alu -14 297 4 213 94 0 0 chrX 174154552 174154584 -2819556 + (CA)n Simple_repeat Simple_repeat 2 33 0 1602 153 0 4 chrX 174154939 174155214 -2818926 - L1MC1 LINE L1 -10 6323 6050 1353 202 25 18 chrX 174155937 174156214 -2817926 + AluJb SINE Alu 13 291 -21 1929 140 3 7 chrX 174158393 174158709 -2815431 - AluSx SINE Alu 0 315 1 666 171 34 11 chrX 174160318 174160494 -2813646 + GA-rich Low_complexity Low_complexity 1 180 0 254 263 0 0 chrX 174160495 174160552 -2813588 + A-rich Low_complexity Low_complexity 2 58 0 1615 186 13 3 chrX 174160678 174160984 -2813156 - AluJb SINE Alu -3 309 1 496 204 0 0 chrX 174161201 174161331 -2812809 - FRAM SINE Alu 0 185 56 241 272 12 12 chrX 174161413 174161494 -2812646 + MIR3 SINE MIR 125 205 -3 22 35 0 0 chrX 174163629 174163658 -2810482 + AT_rich Low_complexity Low_complexity 1 29 0 1963 130 49 35 chrX 174164531 174164901 -2809239 - THE1C LTR MaLR 0 375 1 594 156 13 18 chrX 174164928 174165055 -2809085 + L1P4 LINE L1 5668 5792 -373 250 163 0 0 chrX 174165280 174165323 -2808817 - MLT2D LTR ERVL -2 462 420 253 80 20 20 chrX 174165328 174165378 -2808762 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 237 124 56 11 chrX 174165425 174165514 -2808626 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 515 190 41 19 chrX 174165527 174165844 -2808296 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 725 276 9 14 chrX 174165846 174166062 -2808078 - MLT2D LTR ERVL -57 357 143 1996 197 33 25 chrX 174166062 174166609 -2807531 + MLT2A2 LTR ERVL 1 554 0 332 326 22 27 chrX 174166648 174166832 -2807308 + L1M4 LINE L1 3337 3519 -2627 430 252 18 0 chrX 174166881 174166992 -2807148 + L1M4 LINE L1 3528 3640 -2506 21 0 0 0 chrX 174167180 174167201 -2806939 + AT_rich Low_complexity Low_complexity 1 21 0 251 261 23 0 chrX 174167201 174167289 -2806851 + L1MA10 LINE L1 6242 6331 -3 1973 164 31 3 chrX 174167395 174167779 -2806361 - L1MB3 LINE L1 -2 6181 5787 2533 118 3 3 chrX 174167779 174168142 -2805998 - THE1B LTR MaLR 0 364 2 873 182 47 0 chrX 174168142 174168334 -2805806 + MLT1B LTR MaLR 137 337 -53 13608 168 8 12 chrX 174168349 174172194 -2801946 - L1P3 LINE L1 -2574 3887 2 2004 120 9 125 chrX 174172194 174172473 -2801667 + Tigger7 DNA MER2_type 2191 2400 -187 2637 113 0 0 chrX 174172473 174172835 -2801305 - THE1B LTR MaLR 0 364 3 2004 120 9 125 chrX 174172835 174173004 -2801136 + Tigger7 DNA MER2_type 2400 2587 0 1059 248 32 32 chrX 174173008 174173398 -2800742 + MLT1E3 LTR MaLR 216 615 -11 1301 185 24 20 chrX 174173405 174173702 -2800438 + LTR29 LTR ERV1 321 618 -4 410 344 39 18 chrX 174173853 174174138 -2800002 + L2 LINE L2 2189 2479 -835 2455 74 0 10 chrX 174174196 174174505 -2799635 + AluSq SINE Alu 1 306 -7 1508 174 79 8 chrX 174174792 174175057 -2799083 + AluJb SINE Alu 13 296 -16 1024 188 0 0 chrX 174175057 174175227 -2798913 + AluJo/FRAM SINE Alu 134 303 -9 4883 168 18 8 chrX 174176728 174177617 -2796523 - MER4D LTR ERV1 -5 898 1 185 333 48 0 chrX 174177958 174178042 -2796098 + MIR SINE MIR 158 245 -17 195 42 0 0 chrX 174178091 174178115 -2796025 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1545 152 45 26 chrX 174178118 174178387 -2795753 - AluJo SINE Alu -30 282 9 197 271 21 0 chrX 174178592 174178640 -2795500 - MIR SINE MIR -86 122 74 22 35 0 0 chrX 174178741 174178770 -2795370 + AT_rich Low_complexity Low_complexity 1 29 0 189 321 18 0 chrX 174178890 174178946 -2795194 + L2 LINE L2 3184 3240 -32 416 193 0 50 chrX 174178986 174179167 -2794973 + (TA)n Simple_repeat Simple_repeat 1 172 0 181 139 0 69 chrX 174179183 174179255 -2794885 + (TA)n Simple_repeat Simple_repeat 1 67 0 558 131 16 49 chrX 174179272 174179455 -2794685 + (TA)n Simple_repeat Simple_repeat 1 177 0 2772 149 21 53 chrX 174180823 174181353 -2792787 - L1PA16 LINE L1 0 6166 5654 353 280 100 72 chrX 174181728 174182089 -2792051 - L2 LINE L2 -2111 1203 833 785 217 20 5 chrX 174182805 174183003 -2791137 - L1MA7 LINE L1 -36 6255 6055 427 231 0 17 chrX 174183010 174183137 -2791003 - L1MB4 LINE L1 -10 6170 6048 25 95 0 0 chrX 174183151 174183225 -2790915 + AT_rich Low_complexity Low_complexity 1 74 0 6676 71 5 1 chrX 174183588 174184949 -2789191 + L1PA6 LINE L1 4790 6153 -1 633 291 49 23 chrX 174184955 174185305 -2788835 + L1MC3 LINE L1 6808 7166 -619 520 298 70 26 chrX 174185573 174185989 -2788151 + L1MB2 LINE L1 5284 5717 -2325 418 198 139 30 chrX 174186468 174186569 -2787571 - AluJb SINE Alu -24 288 177 3638 119 22 10 chrX 174186569 174187167 -2786973 + MER41B LTR ERV1 31 635 0 1191 175 78 27 chrX 174187167 174187705 -2786435 - LTR8A LTR ERV1 -121 606 2 1419 191 20 32 chrX 174187706 174188047 -2786093 + L1MA7 LINE L1 5954 6290 -1 34 55 0 0 chrX 174188047 174188102 -2786038 + AT_rich Low_complexity Low_complexity 1 55 0 4037 73 2 42 chrX 174188139 174188716 -2785424 - MER41A LTR ERV1 0 554 1 201 171 0 0 chrX 174189790 174189825 -2784315 + (TA)n Simple_repeat Simple_repeat 1 35 0 950 189 9 18 chrX 174190305 174190522 -2783618 + L1MB2 LINE L1 5949 6163 -8 2621 82 19 82 chrX 174190802 174190890 -2783250 + L1PB1 LINE L1 5691 5783 -368 351 0 0 0 chrX 174190890 174190929 -2783211 + (CA)n Simple_repeat Simple_repeat 2 40 0 2621 82 19 82 chrX 174190929 174191305 -2782835 + L1PB1 LINE L1 5783 6126 -25 877 248 20 20 chrX 174191305 174191600 -2782540 + MLT1C LTR MaLR 149 443 -24 1550 217 0 10 chrX 174192431 174192740 -2781400 + AluJo SINE Alu 1 306 -6 302 194 16 0 chrX 174193357 174193419 -2780721 + MLT1A1 LTR MaLR 6 68 -306 1467 206 15 0 chrX 174193436 174193766 -2780374 + MER47A DNA MER2_type 31 365 -1 1011 190 11 63 chrX 174193767 174194035 -2780105 + MLT1A1 LTR MaLR 68 321 -44 1450 188 74 12 chrX 174194035 174194371 -2779769 - THE1C LTR MaLR 0 375 19 1101 145 4 100 chrX 174195191 174195432 -2778708 + AluJo SINE Alu 95 312 0 2719 99 3 3 chrX 174196064 174196439 -2777701 + THE1C LTR MaLR 1 375 0 21 36 0 0 chrX 174196442 174196470 -2777670 + AT_rich Low_complexity Low_complexity 1 28 0 237 180 0 0 chrX 174196651 174196701 -2777439 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 2200 97 7 10 chrX 174196779 174197094 -2777046 + AluY SINE Alu 1 314 0 21 0 0 0 chrX 174197108 174197129 -2777011 + AT_rich Low_complexity Low_complexity 1 21 0 1168 84 0 0 chrX 174197448 174197603 -2776537 + THE1B LTR MaLR 210 364 0 229 292 9 0 chrX 174197774 174197887 -2776253 - L1M4 LINE L1 -3178 2968 2855 4699 95 5 12 chrX 174199955 174200627 -2773513 - PABL_B LTR ERV1 0 667 1 2153 224 23 61 chrX 174201223 174201418 -2772722 - L1MA10 LINE L1 -1 6333 6132 198 103 0 0 chrX 174201418 174201447 -2772693 + (TG)n Simple_repeat Simple_repeat 2 30 0 2153 224 23 61 chrX 174201447 174201917 -2772223 - L1MA10 LINE L1 -202 6132 5694 2339 91 40 37 chrX 174201917 174202291 -2771849 - THE1C LTR MaLR 0 375 1 2153 224 23 61 chrX 174202291 174202325 -2771815 - L1MA10 LINE L1 -640 5694 5660 213 39 0 0 chrX 174203066 174203092 -2771048 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 239 245 11 0 chrX 174203142 174203236 -2770904 + (TA)n Simple_repeat Simple_repeat 1 95 0 202 200 0 0 chrX 174203248 174203283 -2770857 + (CA)n Simple_repeat Simple_repeat 2 36 0 297 276 13 0 chrX 174204527 174204603 -2769537 + GA-rich Low_complexity Low_complexity 2 78 0 4424 162 55 28 chrX 174206372 174206552 -2767588 + L1MB3 LINE L1 5004 5178 -1005 1978 144 3 0 chrX 174206552 174206863 -2767277 + AluSq SINE Alu 1 312 0 4424 162 55 28 chrX 174206863 174207458 -2766682 + L1MB3 LINE L1 5178 5809 -374 1944 137 64 17 chrX 174207458 174207816 -2766324 + THE1C LTR MaLR 1 375 0 4424 162 55 28 chrX 174207816 174208200 -2765940 + L1MB3 LINE L1 5809 6181 -2 251 261 23 0 chrX 174208306 174208394 -2765746 - L1MA10 LINE L1 -3 6331 6242 21 0 0 0 chrX 174208394 174208415 -2765725 + AT_rich Low_complexity Low_complexity 1 21 0 402 252 18 0 chrX 174208603 174208714 -2765426 - L1M4 LINE L1 -2506 3640 3528 332 326 22 27 chrX 174208763 174208947 -2765193 - L1M4 LINE L1 -2627 3519 3337 1887 197 33 25 chrX 174208986 174209533 -2764607 - MLT2A2 LTR ERVL 0 554 1 722 264 9 9 chrX 174209536 174209748 -2764392 + MLT2D LTR ERVL 146 357 -57 515 190 41 19 chrX 174209750 174210067 -2764073 + (TCTA)n Simple_repeat Simple_repeat 1 324 0 237 124 56 11 chrX 174210080 174210169 -2763971 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 253 80 20 20 chrX 174210216 174210266 -2763874 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 236 163 0 0 chrX 174210271 174210314 -2763826 + MLT2D LTR ERVL 420 462 -2 212 313 15 0 chrX 174211094 174211161 -2762979 + CT-rich Low_complexity Low_complexity 2 69 0 229 397 66 0 chrX 174211163 174211314 -2762826 - L2 LINE L2 -1 3271 3111 1772 162 42 48 chrX 174212319 174212696 -2761444 + THE1C LTR MaLR 1 375 0 897 200 47 3 chrX 174212822 174213200 -2760940 + L1MB3 LINE L1 5573 6081 -102 1718 220 146 31 chrX 174213202 174213875 -2760265 + LTR1B LTR ERV1 1 955 -65 339 104 0 125 chrX 174213937 174213995 -2760145 + L1MB4 LINE L1 6094 6137 -43 2430 85 0 0 chrX 174213995 174214290 -2759850 + AluY SINE Alu 1 295 -16 339 104 0 125 chrX 174214290 174214327 -2759813 + L1MB4 LINE L1 6137 6177 -3 1169 96 0 34 chrX 174214708 174214885 -2759255 - L1PA11 LINE L1 0 6174 6004 1967 137 0 29 chrX 174214915 174215221 -2758919 - AluSg SINE Alu -13 297 1 1458 176 36 102 chrX 174215728 174216119 -2758021 - MLT1A1 LTR MaLR 0 365 1 2052 149 0 3 chrX 174216206 174216501 -2757639 + AluSx SINE Alu 1 294 -18 554 129 43 0 chrX 174217620 174217713 -2756427 - L1PB1 LINE L1 -1 6150 6054 26 64 0 0 chrX 174217748 174217795 -2756345 + AT_rich Low_complexity Low_complexity 1 47 0 410 161 50 3 chrX 174217811 174218178 -2755962 + (TA)n Simple_repeat Simple_repeat 1 384 0 273 184 57 0 chrX 174218198 174218356 -2755784 + (TA)n Simple_repeat Simple_repeat 1 167 0 205 218 18 0 chrX 174218380 174218435 -2755705 + (TTATA)n Simple_repeat Simple_repeat 3 58 0 245 98 24 0 chrX 174218451 174218492 -2755648 + (TG)n Simple_repeat Simple_repeat 1 42 0 2776 168 62 30 chrX 174220156 174220666 -2753474 + L1MC1 LINE L1 5727 6254 -79 1743 157 6 39 chrX 174220666 174220978 -2753162 + AluJb SINE Alu 1 302 -10 2776 168 62 30 chrX 174220978 174221041 -2753099 + L1MC1 LINE L1 6254 6314 -19 2258 82 4 0 chrX 174221305 174221648 -2752492 + AluSg SINE Alu 1 344 0 3245 89 22 26 chrX 174223654 174224159 -2749981 - L1PA13 LINE L1 -5 6158 5656 234 0 0 0 chrX 174224786 174224812 -2749328 + (A)n Simple_repeat Simple_repeat 1 26 0 34 65 0 0 chrX 174225421 174225483 -2748657 + AT_rich Low_complexity Low_complexity 1 62 0 21 36 0 0 chrX 174225575 174225603 -2748537 + AT_rich Low_complexity Low_complexity 1 28 0 1094 153 11 11 chrX 174225782 174225959 -2748181 - AluJb SINE Alu -2 310 134 408 40 0 0 chrX 174225959 174226009 -2748131 + (TTTTC)n Simple_repeat Simple_repeat 3 52 0 2338 64 0 3 chrX 174226009 174226291 -2747849 - AluY SINE Alu -30 281 1 1296 164 102 79 chrX 174226305 174226610 -2747530 - AluJo SINE Alu 0 312 1 255 319 28 14 chrX 174226935 174227079 -2747061 - MIR SINE MIR -12 250 105 1273 137 60 17 chrX 174228044 174228277 -2745863 + MER39B LTR ERV1 411 653 0 238 169 28 127 chrX 174228277 174228348 -2745792 - MER2 DNA MER2_type -281 64 1 3459 125 4 8 chrX 174228530 174229025 -2745115 + MER1A DNA MER1_type 37 529 0 229 286 32 0 chrX 174229032 174229095 -2745045 + L2 LINE L2 3243 3307 -6 717 206 16 0 chrX 174229400 174229546 -2744594 + FLAM_C SINE Alu 1 148 0 224 203 0 94 chrX 174229925 174229989 -2744151 - L3 LINE CR1 -754 823 766 806 150 6 17 chrX 174230104 174230284 -2743856 + (TCTA)n Simple_repeat Simple_repeat 2 179 0 225 175 0 0 chrX 174230287 174230327 -2743813 + CT-rich Low_complexity Low_complexity 1 40 0 2024 151 66 45 chrX 174230337 174230761 -2743379 + Tigger2a DNA MER2_type 1 433 -1 294 29 0 0 chrX 174230762 174230797 -2743343 + (TG)n Simple_repeat Simple_repeat 2 36 0 379 341 54 47 chrX 174230845 174231121 -2743019 - L3 LINE CR1 -934 643 366 2186 107 3 19 chrX 174232052 174232360 -2741780 + AluSx SINE Alu 1 303 -9 2409 64 3 7 chrX 174232364 174232662 -2741478 + AluSp SINE Alu 1 297 -16 414 211 0 0 chrX 174233352 174233428 -2740712 + FLAM_A SINE Alu 46 121 -21 1563 185 7 26 chrX 174233435 174233737 -2740403 + AluJo SINE Alu 1 296 -16 2100 129 3 3 chrX 174233858 174234153 -2739987 + AluSx SINE Alu 1 295 -17 357 24 0 0 chrX 174234153 174234195 -2739945 + (TA)n Simple_repeat Simple_repeat 2 43 0 1764 189 30 30 chrX 174234411 174234782 -2739358 - MLT1A2 LTR MaLR 0 374 4 1088 227 123 63 chrX 174234862 174235525 -2738615 - LTR27 LTR ERV1 0 636 3 380 244 62 34 chrX 174236161 174236356 -2737784 + MLT1I LTR MaLR 249 402 -7 1203 198 28 4 chrX 174237678 174237926 -2736214 + L1MB5 LINE L1 5913 6166 -8 1172 204 0 9 chrX 174238427 174238643 -2735497 + AluJo SINE Alu 1 214 -98 2344 188 19 24 chrX 174239366 174239829 -2734311 - MLT1C LTR MaLR -1 466 6 189 286 32 95 chrX 174240037 174240163 -2733977 - L2 LINE L2 -190 3082 2965 1984 93 53 50 chrX 174241094 174241417 -2732723 + THE1B LTR MaLR 41 364 0 3528 42 0 0 chrX 174241832 174242257 -2731883 + L1PA6 LINE L1 5729 6153 -1 728 303 40 14 chrX 174242263 174242613 -2731527 + L1MC3 LINE L1 6808 7166 -619 606 295 70 29 chrX 174242882 174243299 -2730841 + L1MB2 LINE L1 5284 5717 -2325 189 306 102 46 chrX 174243652 174243669 -2730471 - L2 LINE L2 -2 3311 3296 1636 171 55 47 chrX 174243669 174244031 -2730109 + MER47A DNA MER2_type 1 365 -1 189 306 102 46 chrX 174244031 174244121 -2730019 - L2 LINE L2 -17 3296 3198 1268 144 0 0 chrX 174244158 174244346 -2729794 - AluJb SINE Alu -4 308 121 387 0 0 0 chrX 174244466 174244509 -2729631 + (TA)n Simple_repeat Simple_repeat 2 44 0 1001 180 9 18 chrX 174244990 174245207 -2728933 + L1MB2 LINE L1 5949 6163 -8 2980 81 26 71 chrX 174245479 174245574 -2728566 + L1PB1 LINE L1 5679 5777 -374 351 0 0 0 chrX 174245574 174245613 -2728527 + (CA)n Simple_repeat Simple_repeat 2 40 0 2980 81 26 71 chrX 174245613 174246012 -2728128 + L1PB1 LINE L1 5777 6151 0 1521 191 21 17 chrX 174246183 174246471 -2727669 + AluJb SINE Alu 3 291 -21 1480 178 112 166 chrX 174247533 174247701 -2726439 - LTR8A LTR ERV1 0 727 551 3242 123 16 12 chrX 174247701 174248212 -2725928 + MER75 DNA T2_type 2 514 0 1480 178 112 166 chrX 174248212 174248812 -2725328 - LTR8A LTR ERV1 -176 551 1 3077 180 56 3 chrX 174249178 174249768 -2724372 + LTR26E LTR ERV1 2 622 0 1362 160 106 83 chrX 174249994 174250381 -2723759 - LTR8A LTR ERV1 0 727 332 347 183 28 14 chrX 174250383 174250454 -2723686 + MER84 LTR ERVI 3 74 -433 2702 142 76 6 chrX 174250454 174250927 -2723213 + MER84 LTR ERV1 2 507 0 2037 129 18 29 chrX 174250927 174251010 -2723130 - LTR8A LTR ERV1 -391 336 254 2795 81 3 16 chrX 174251010 174251379 -2722761 - THE1B LTR MaLR 0 364 1 2037 129 18 29 chrX 174251379 174251635 -2722505 - LTR8A LTR ERV1 -473 254 1 430 171 0 0 chrX 174251870 174251946 -2722194 + L1PA10 LINE L1 6092 6167 -1 2234 113 3 0 chrX 174251957 174252266 -2721874 + AluSx SINE Alu 3 312 0 475 272 71 48 chrX 174253859 174254127 -2720013 + L1M4 LINE L1 2136 2409 -3737 2081 114 28 0 chrX 174255165 174255454 -2718686 + AluSq SINE Alu 1 297 -16 795 272 107 72 chrX 174255466 174255621 -2718519 - MLT1G1 LTR MaLR -1 594 446 2873 186 14 80 chrX 174255621 174256358 -2717782 + LTR8 LTR ERV1 4 691 0 795 272 107 72 chrX 174256358 174256761 -2717379 - MLT1G1 LTR MaLR -149 446 16 24 53 0 0 chrX 174257080 174257118 -2717022 + AT_rich Low_complexity Low_complexity 1 38 0 302 279 82 71 chrX 174257127 174257194 -2716946 + L1M4 LINE L1 5106 5171 -975 2066 134 0 0 chrX 174257194 174257485 -2716655 + AluSx SINE Alu 7 297 -15 302 279 82 71 chrX 174257485 174257711 -2716429 + L1M4 LINE L1 5171 5402 -744 2498 137 153 1 chrX 174257764 174258249 -2715891 + L1MA8 LINE L1 5595 6150 -141 1602 173 52 4 chrX 174258249 174258542 -2715598 + AluJo SINE Alu 1 306 0 233 100 0 0 chrX 174258551 174258591 -2715549 + L1MA7 LINE L1 6249 6288 -3 23 0 0 0 chrX 174258663 174258686 -2715454 + AT_rich Low_complexity Low_complexity 1 23 0 306 128 21 0 chrX 174258835 174258882 -2715258 - MLT1B LTR MaLR 0 390 343 1727 190 3 0 chrX 174258909 174259193 -2714947 - AluJb SINE Alu -25 287 3 1055 249 63 63 chrX 174259195 174259625 -2714515 - MLT1C LTR MaLR -37 430 1 45 19 0 0 chrX 174259703 174259755 -2714385 + AT_rich Low_complexity Low_complexity 1 52 0 1734 177 0 4 chrX 174259770 174260047 -2714093 - AluJo SINE Alu -22 290 15 24 0 0 0 chrX 174260184 174260208 -2713932 + AT_rich Low_complexity Low_complexity 1 24 0 1439 241 17 17 chrX 174262523 174262880 -2711260 + MLT1C LTR MaLR 7 363 -104 430 232 0 10 chrX 174263105 174263204 -2710936 + MLT1C LTR MaLR 365 462 -5 284 127 18 0 chrX 174263426 174263481 -2710659 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 749 30 0 10 chrX 174263859 174263958 -2710182 + L1MA4A LINE L1 6196 6293 -10 23 0 0 0 chrX 174263959 174263982 -2710158 + AT_rich Low_complexity Low_complexity 1 23 0 815 269 48 81 chrX 174264019 174264407 -2709733 + Zaphod DNA AcHobo 1 374 -3657 204 67 0 0 chrX 174264407 174264437 -2709703 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 815 269 48 81 chrX 174264437 174264490 -2709650 + Zaphod DNA AcHobo 374 427 -3604 2193 139 0 0 chrX 174264679 174264980 -2709160 + AluSx SINE Alu 1 301 -11 441 289 20 0 chrX 174264981 174265130 -2709010 + Zaphod DNA AcHobo 445 596 -3435 248 291 19 19 chrX 174265130 174265233 -2708907 + (TATG)n Simple_repeat Simple_repeat 1 103 0 24 0 0 0 chrX 174265377 174265401 -2708739 + AT_rich Low_complexity Low_complexity 1 24 0 268 194 0 65 chrX 174265572 174265634 -2708506 + MER58A DNA MER1_type 29 86 -21 252 0 0 0 chrX 174265634 174265662 -2708478 + (T)n Simple_repeat Simple_repeat 1 28 0 3303 135 8 0 chrX 174266280 174266790 -2707350 + MER75 DNA T2_type 1 514 0 2072 241 95 40 chrX 174266949 174267730 -2706410 - LTR1B LTR ERV1 0 826 3 804 248 13 9 chrX 174267748 174267978 -2706162 + MER33 DNA MER1_type 10 240 -84 618 233 16 0 chrX 174267983 174268112 -2706028 - MLT1C LTR MaLR -6 461 331 25 31 0 0 chrX 174268713 174268745 -2705395 + AT_rich Low_complexity Low_complexity 1 32 0 7612 22 7 0 chrX 174269345 174270704 -2703436 - L1PA4 LINE L1 -2 6153 4790 29 101 0 0 chrX 174271067 174271166 -2702974 + AT_rich Low_complexity Low_complexity 1 99 0 492 209 0 0 chrX 174271177 174271282 -2702858 + L1MB4 LINE L1 6066 6170 -10 940 207 15 0 chrX 174271289 174271487 -2702653 + L1MA7 LINE L1 6055 6255 -36 323 280 100 72 chrX 174272203 174272564 -2701576 + L2 LINE L2 833 1203 -2111 2828 145 21 53 chrX 174272939 174273469 -2700671 + L1PA16 LINE L1 5654 6166 0 2061 235 14 6 chrX 174275272 174275757 -2698383 - L1MB5 LINE L1 -68 6106 5618 571 245 102 4 chrX 174276034 174276204 -2697936 - L1PA8A LINE L1 -499 5632 5452 237 65 0 0 chrX 174276811 174276842 -2697298 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1548 157 35 35 chrX 174276847 174276995 -2697145 - AluJo SINE Alu -26 286 136 2293 105 0 0 chrX 174276995 174277301 -2696839 - AluSx SINE Alu -6 306 1 1548 157 35 35 chrX 174277301 174277438 -2696702 - AluJo SINE Alu -175 137 1 220 189 38 0 chrX 174277491 174277544 -2696596 + (TA)n Simple_repeat Simple_repeat 2 56 0 29 28 0 0 chrX 174277582 174277618 -2696522 + AT_rich Low_complexity Low_complexity 1 36 0 1761 203 11 34 chrX 174278423 174278479 -2695661 - MLT2B1 LTR ERVL 0 520 464 2467 178 45 0 chrX 174278479 174278941 -2695199 + L1PB4 LINE L1 5670 6152 -4 1761 203 11 34 chrX 174278941 174279366 -2694774 - MLT2B1 LTR ERVL -56 464 1 26 30 0 0 chrX 174280031 174280064 -2694076 + AT_rich Low_complexity Low_complexity 1 33 0 864 205 0 0 chrX 174280280 174280441 -2693699 - AluJb SINE Alu -15 297 137 355 305 40 75 chrX 174280636 174280984 -2693156 - L1M4 LINE L1 -3022 3124 2789 308 152 0 0 chrX 174281096 174281142 -2692998 - MSTA LTR MaLR -382 46 1 277 260 39 0 chrX 174281144 174281221 -2692919 + MER20 DNA MER1_type 139 218 -1 269 265 10 49 chrX 174281469 174281571 -2692569 - MIR SINE MIR -71 191 94 2306 119 0 0 chrX 174281783 174282095 -2692045 + AluSx SINE Alu 1 312 0 4938 110 29 89 chrX 174282104 174282401 -2691739 + Tigger3(Golem) DNA MER2_type 1 314 -2715 1894 166 0 13 chrX 174282401 174282709 -2691431 - AluJb SINE Alu -8 304 1 4938 110 29 89 chrX 174282709 174283044 -2691096 + Tigger3(Golem) DNA MER2_type 314 667 -2362 755 173 0 15 chrX 174283044 174283177 -2690963 + FLAM_C SINE Alu 1 131 -2 4938 110 29 89 chrX 174283177 174283833 -2690307 + Tigger3(Golem) DNA MER2_type 667 3029 0 401 185 25 38 chrX 174283833 174283990 -2690150 + (TA)n Simple_repeat Simple_repeat 1 155 0 216 92 46 46 chrX 174284018 174284083 -2690057 + (TA)n Simple_repeat Simple_repeat 2 66 0 349 123 27 68 chrX 174284083 174284156 -2689984 - MER6 DNA MER2_type 0 865 796 868 123 6 37 chrX 174284490 174284653 -2689487 - AluSq SINE Alu -155 158 1 372 224 0 0 chrX 174284679 174284746 -2689394 - MER6 DNA MER2_type -143 1 -65 189 107 0 0 chrX 174284749 174284777 -2689363 + (TG)n Simple_repeat Simple_repeat 1 28 0 215 91 91 42 chrX 174284803 174284968 -2689172 + (TA)n Simple_repeat Simple_repeat 2 174 0 180 111 0 0 chrX 174285043 174285070 -2689070 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 244 42 42 chrX 174285076 174285244 -2688896 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 319 166 36 50 chrX 174285132 174285271 -2688869 + (TA)n Simple_repeat Simple_repeat 2 138 0 2320 145 2 28 chrX 174286056 174286456 -2687684 - MLT1B LTR MaLR 0 390 1 1874 144 32 0 chrX 174286588 174286927 -2687213 + L1MA5 LINE L1 5946 6295 -5 288 53 0 0 chrX 174287200 174287238 -2686902 + (CA)n Simple_repeat Simple_repeat 2 39 0 818 161 0 83 chrX 174289036 174289228 -2684912 + MLT1C LTR MaLR 1 176 -291 1383 146 4 0 chrX 174289231 174289464 -2684676 - MLT1B LTR MaLR -126 264 31 22 0 0 0 chrX 174289702 174289724 -2684416 + AT_rich Low_complexity Low_complexity 1 22 0 365 290 113 20 chrX 174289753 174290053 -2684087 + L1M4 LINE L1 3689 4016 -2130 1392 182 31 35 chrX 174290491 174290749 -2683391 + AluJo SINE Alu 25 281 -31 213 154 0 0 chrX 174290767 174290806 -2683334 + GA-rich Low_complexity Low_complexity 2 40 0 24 0 0 0 chrX 174290895 174290919 -2683221 + AT_rich Low_complexity Low_complexity 1 24 0 36 70 0 0 chrX 174290998 174291069 -2683071 + AT_rich Low_complexity Low_complexity 1 71 0 1052 174 58 45 chrX 174292637 174292861 -2681279 - AluJb SINE Alu 0 312 86 1504 129 0 18 chrX 174292861 174293085 -2681055 - AluJo SINE Alu -92 220 1 396 194 28 33 chrX 174293826 174294006 -2680134 + (CATAA)n Simple_repeat Simple_repeat 1 179 0 406 235 52 15 chrX 174294006 174294142 -2679998 + (CATAG)n Simple_repeat Simple_repeat 3 143 0 3719 103 94 81 chrX 174294200 174294975 -2679165 + LTR1 LTR ERV1 1 785 0 305 204 0 45 chrX 174295000 174295157 -2678983 + (CATAG)n Simple_repeat Simple_repeat 1 150 0 270 168 21 42 chrX 174295180 174295275 -2678865 + (CATAG)n Simple_repeat Simple_repeat 2 94 0 592 232 23 34 chrX 174295279 174295634 -2678506 + (CATAA)n Simple_repeat Simple_repeat 1 351 0 458 288 117 30 chrX 174295767 174296066 -2678074 - MER115 DNA AcHobo -17 676 352 342 327 18 9 chrX 174296420 174296530 -2677610 - MER115 DNA AcHobo -425 268 158 225 317 33 0 chrX 174296601 174296661 -2677479 - Zaphod DNA AcHobo -3969 62 1 1425 294 42 8 chrX 174299130 174299514 -2674626 - MER70B LTR ERVL -178 400 4 359 296 59 35 chrX 174299526 174299729 -2674411 - HERVL LTR ERVL -2722 2932 2725 384 111 0 0 chrX 174299735 174299798 -2674342 + (TA)n Simple_repeat Simple_repeat 2 64 0 381 58 0 0 chrX 174299798 174299850 -2674290 + (GA)n Simple_repeat Simple_repeat 1 52 0 814 178 27 7 chrX 174299853 174299999 -2674141 - AluJb SINE Alu -30 282 134 420 202 35 1 chrX 174300043 174300157 -2673983 + L1MA9 LINE L1 6180 6292 -8 225 175 0 0 chrX 174300172 174300212 -2673928 + MLT1B LTR MaLR 168 207 -183 1401 115 46 0 chrX 174300471 174300688 -2673452 - MLT1B LTR MaLR -6 384 158 1253 148 6 9 chrX 174300688 174300914 -2673226 - MLT1B LTR MaLR 0 396 167 1358 171 0 42 chrX 174300936 174301222 -2672918 - L1MA9 LINE L1 -31 6281 6008 842 191 6 6 chrX 174301223 174301391 -2672749 - MLT1B LTR MaLR -210 180 13 308 343 76 46 chrX 174301433 174301827 -2672313 - HERVL LTR ERVL -3338 2316 1911 201 159 0 0 chrX 174302678 174302722 -2671418 + (CAA)n Simple_repeat Simple_repeat 2 45 0 272 338 0 0 chrX 174302961 174303041 -2671099 - HERVL LTR ERVL -4834 930 851 1732 135 8 8 chrX 174303349 174303616 -2670524 + AluSx SINE Alu 1 267 -45 323 167 0 14 chrX 174305962 174306023 -2668117 + (TA)n Simple_repeat Simple_repeat 1 62 -9 878 196 70 15 chrX 174306023 174306222 -2667918 + MER6B DNA MER2_type 1 210 0 323 167 0 14 chrX 174306222 174306232 -2667908 + (TA)n Simple_repeat Simple_repeat 62 71 0 241 194 69 28 chrX 174306354 174306426 -2667714 - L1MC4 LINE L1 -1339 6703 6629 251 384 53 30 chrX 174307414 174307547 -2666593 + L2 LINE L2 3129 3264 -8 389 200 29 122 chrX 174308138 174308343 -2665797 - MER53 DNA DNA -2 187 2 1594 170 4 4 chrX 174309763 174310028 -2664112 + AluJb SINE Alu 3 267 -45 345 331 139 14 chrX 174310133 174310556 -2663584 + L1MC4a LINE L1 4767 5242 -904 1342 258 100 67 chrX 174310656 174311679 -2662461 + L1MC4a LINE L1 5363 6419 -1389 546 217 35 7 chrX 174311680 174311823 -2662317 + L1MC4 LINE L1 7731 7877 -165 365 219 39 70 chrX 174311956 174312084 -2662056 + L1MC4 LINE L1 7911 8034 -8 3214 129 20 0 chrX 174312163 174312659 -2661481 + MER84 LTR ERV1 2 507 0 220 271 0 0 chrX 174313145 174313194 -2660946 + (TG)n Simple_repeat Simple_repeat 1 49 0 27 0 0 0 chrX 174313491 174313518 -2660622 + AT_rich Low_complexity Low_complexity 1 27 0 21 71 0 0 chrX 174313560 174313602 -2660538 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chrX 174313616 174313641 -2660499 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chrX 174314107 174314149 -2659991 + AT_rich Low_complexity Low_complexity 1 42 0 1883 173 127 2 chrX 174314454 174314864 -2659276 - MER65C LTR ERV1 0 461 1 3252 194 55 52 chrX 174315185 174315518 -2658622 - Charlie1a DNA MER1_type -1307 1454 1124 1616 143 0 109 chrX 174315518 174315868 -2658272 - AluJo SINE Alu 0 312 1 3252 194 55 52 chrX 174315868 174316522 -2657618 - Charlie1a DNA MER1_type -1637 1124 464 888 224 72 89 chrX 174316515 174316864 -2657276 - Charlie1a DNA MER1_type -1112 343 1 * 250 202 71 60 chrX 174317022 174317106 -2657034 - L2 LINE L2 -2 3311 3227 852 160 0 14 chrX 174317978 174318122 -2656018 + FRAM SINE Alu 25 166 -10 48 0 0 0 chrX 174319019 174319067 -2655073 + AT_rich Low_complexity Low_complexity 1 48 0 2236 101 11 46 chrX 174319067 174319434 -2654706 + MER4A LTR ERV1 3 356 -308 2026 118 3 43 chrX 174319472 174319795 -2654345 + MER4A LTR ERV1 355 664 0 822 189 12 37 chrX 174320267 174320431 -2653709 + MLT1A2 LTR MaLR 2 161 -213 676 82 70 3 chrX 174320484 174320807 -2653333 + CT-rich Low_complexity Low_complexity 1 344 0 537 111 22 44 chrX 174320796 174320949 -2653191 + (TCTCTG)n Simple_repeat Simple_repeat 5 155 -25 * 2126 57 40 47 chrX 174320949 174321248 -2652892 - AluY SINE Alu -14 297 1 537 111 22 44 chrX 174321248 174321274 -2652866 + (TCTCTG)n Simple_repeat Simple_repeat 155 180 0 363 115 44 26 chrX 174321297 174321410 -2652730 + (TCTCTG)n Simple_repeat Simple_repeat 4 118 0 744 271 0 38 chrX 174321422 174321632 -2652508 + MLT1A2 LTR MaLR 173 374 0 25 0 0 0 chrX 174321642 174321667 -2652473 + AT_rich Low_complexity Low_complexity 1 25 0 1120 167 29 5 chrX 174321667 174321871 -2652269 - L1PB3 LINE L1 -9 6145 5937 2126 126 86 8 chrX 174322169 174322541 -2651599 - MER57A LTR ERV1 0 403 3 645 155 0 0 chrX 174324075 174324178 -2649962 + FLAM_A SINE Alu 30 132 -10 237 289 0 0 chrX 174324578 174324630 -2649510 + L2 LINE L2 3214 3265 -7 22 0 0 0 chrX 174325701 174325723 -2648417 + AT_rich Low_complexity Low_complexity 1 22 0 6065 107 11 21 chrX 174325723 174326664 -2647476 - L1MA3 LINE L1 -1 6304 5374 659 136 8 76 chrX 174326723 174326855 -2647285 + MER31A LTR ERV1 2 124 -361 579 277 20 66 chrX 174326856 174327206 -2646934 + L1MC/D LINE L1 2339 2672 -3474 1757 149 7 20 chrX 174327222 174327523 -2646617 - MER61A LTR ERV1 0 343 47 1681 271 69 66 chrX 174327527 174328699 -2645441 + L1MC/D LINE L1 2961 4136 -2010 333 189 37 37 chrX 174328714 174329009 -2645131 + (TAGA)n Simple_repeat Simple_repeat 1 295 0 1823 290 76 32 chrX 174329030 174330426 -2643714 + L1MC/D LINE L1 4179 5644 -572 1594 155 10 37 chrX 174330880 174331177 -2642963 - AluJo SINE Alu -18 294 6 189 74 0 0 chrX 174331536 174331563 -2642577 + (CA)n Simple_repeat Simple_repeat 2 28 0 877 72 0 40 chrX 174331984 174332109 -2642031 - L1M1 LINE L1 -524 5778 5659 2814 90 26 9 chrX 174332109 174332530 -2641610 + L1MA1 LINE L1 5873 6301 -1 21 0 0 0 chrX 174332721 174332742 -2641398 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chrX 174333280 174333301 -2640839 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chrX 174333886 174333927 -2640213 + AT_rich Low_complexity Low_complexity 1 41 0 3743 164 47 12 chrX 174334454 174335154 -2638986 + L1MA4 LINE L1 5505 6236 -64 1800 141 61 30 chrX 174335154 174335517 -2638623 - THE1C LTR MaLR -1 374 1 3743 164 47 12 chrX 174335517 174335580 -2638560 + L1MA4 LINE L1 6236 6295 -5 233 159 0 45 chrX 174336026 174336070 -2638070 - L2 LINE L2 0 3313 3272 222 37 0 0 chrX 174336082 174336109 -2638031 + (TC)n Simple_repeat Simple_repeat 2 28 0 1311 167 25 0 chrX 174336492 174336732 -2637408 - L1MA4 LINE L1 -461 5839 5594 353 313 107 58 chrX 174337177 174337570 -2636570 - MLT1J LTR MaLR -6 505 94 236 164 0 36 chrX 174337813 174337868 -2636272 + (TTAA)n Simple_repeat Simple_repeat 3 55 0 202 292 10 73 chrX 174338476 174338572 -2635568 - L2 LINE L2 -1 3271 3182 331 244 27 0 chrX 174338624 174338716 -2635424 - FLAM_A SINE Alu -7 126 52 511 125 45 28 chrX 174338748 174338924 -2635216 + (TCTA)n Simple_repeat Simple_repeat 2 180 0 509 76 57 25 chrX 174338979 174339136 -2635004 + (TCTA)n Simple_repeat Simple_repeat 3 164 0 753 87 23 29 chrX 174339152 174339325 -2634815 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 215 325 24 0 chrX 174339636 174339719 -2634421 + GA-rich Low_complexity Low_complexity 6 90 0 279 303 67 0 chrX 174339829 174339918 -2634222 - MIR SINE MIR -111 151 57 1538 201 38 3 chrX 174340269 174340562 -2633578 - AluJo SINE Alu -9 303 1 22 0 0 0 chrX 174340564 174340586 -2633554 + AT_rich Low_complexity Low_complexity 1 22 0 337 273 66 62 chrX 174340949 174341176 -2632964 - L2 LINE L2 0 3313 3086 1105 54 15 25 chrX 174341665 174341873 -2632267 + (TAGA)n Simple_repeat Simple_repeat 1 205 0 682 99 60 12 chrX 174341913 174342321 -2631819 + (TAGA)n Simple_repeat Simple_repeat 1 427 0 733 127 39 8 chrX 174342370 174342634 -2631506 + (TAGA)n Simple_repeat Simple_repeat 1 272 0 369 0 0 0 chrX 174342961 174343002 -2631138 + (TG)n Simple_repeat Simple_repeat 2 42 0 239 196 18 0 chrX 174343014 174343070 -2631070 + (TA)n Simple_repeat Simple_repeat 1 57 0 2267 157 23 43 chrX 174343083 174343523 -2630617 - Tigger2a DNA MER2_type 0 434 4 213 94 0 0 chrX 174343523 174343555 -2630585 + (TCTA)n Simple_repeat Simple_repeat 4 35 0 366 281 75 75 chrX 174344488 174344755 -2629385 + MLT1L LTR MaLR 1 267 -348 571 210 17 0 chrX 174345328 174345447 -2628693 - MLT1B LTR MaLR -264 126 6 297 68 0 0 chrX 174345447 174345491 -2628649 + (CA)n Simple_repeat Simple_repeat 2 45 0 1907 123 39 75 chrX 174346251 174346640 -2627500 - THE1C LTR MaLR 0 375 1 1756 242 43 2 chrX 174346821 174347242 -2626898 + MLT1C LTR MaLR 1 438 -29 222 208 0 0 chrX 174347983 174348031 -2626109 + (TG)n Simple_repeat Simple_repeat 1 48 0 206 121 0 0 chrX 174348646 174348679 -2625461 + (TC)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chrX 174348947 174348976 -2625164 + (TG)n Simple_repeat Simple_repeat 1 29 0 1904 173 34 3 chrX 174349228 174349581 -2624559 - MLT1A1 LTR MaLR -1 364 1 350 278 68 25 chrX 174349662 174349824 -2624316 + MLT1G LTR MaLR 5 173 -376 1220 228 80 46 chrX 174349836 174350274 -2623866 + MLT1C LTR MaLR 15 467 0 1143 253 85 27 chrX 174350274 174350673 -2623467 + MLT1G LTR MaLR 166 549 0 292 125 21 0 chrX 174351537 174351585 -2622555 - MER3 DNA MER1_type -6 203 155 1740 136 75 59 chrX 174351608 174351935 -2622205 + L1MB3 LINE L1 5542 5822 -361 1909 184 0 0 chrX 174351935 174352245 -2621895 + AluJo SINE Alu 3 312 0 1740 136 75 59 chrX 174352245 174352298 -2621842 + L1MB3 LINE L1 5822 5873 -310 1909 184 18 3 chrX 174352300 174352637 -2621503 + MER7A DNA MER2_type 7 346 0 1304 132 0 5 chrX 174352637 174352842 -2621298 + L1MB3 LINE L1 5905 6108 -75 2636 140 28 28 chrX 174352844 174353282 -2620858 + L1PB4 LINE L1 5686 6126 -30 2054 110 86 6 chrX 174353282 174353619 -2620521 + THE1B LTR MaLR 1 364 0 2636 140 28 28 chrX 174353619 174353644 -2620496 + L1PB4 LINE L1 6125 6149 -7 239 348 43 14 chrX 174353692 174353830 -2620310 - MER3 DNA MER1_type -62 147 6 1969 153 0 0 chrX 174354377 174354692 -2619448 + AluSx SINE Alu 1 315 0 277 198 26 99 chrX 174355127 174356052 -2618088 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 386 217 49 14 chrX 174355185 174355253 -2618887 + (TA)n Simple_repeat Simple_repeat 2 66 -83 2255 166 14 40 chrX 174355253 174355320 -2618820 - Tigger2a DNA MER2_type -2274 434 367 2063 128 3 0 chrX 174355320 174355609 -2618531 - AluSx SINE Alu -22 290 1 2255 166 14 40 chrX 174355609 174355987 -2618153 - Tigger2a DNA MER2_type -2341 367 1 386 217 49 14 chrX 174355987 174356061 -2618079 + (TA)n Simple_repeat Simple_repeat 66 149 0 183 281 320 8 chrX 174356299 174356427 -2617713 + MER5A DNA MER1_type 9 176 -13 922 146 18 0 chrX 174357519 174357751 -2616389 + GA-rich Low_complexity Low_complexity 1 236 0 1137 115 75 0 chrX 174358409 174358609 -2615531 - L1MA5A LINE L1 -10 6287 6073 2839 95 48 83 chrX 174358609 174359105 -2615035 - MER1A DNA MER1_type -2 527 49 462 111 0 0 chrX 174359108 174359180 -2614960 - L1MA5A LINE L1 -213 6084 6013 1031 189 0 0 chrX 174359482 174359646 -2614494 - AluJb SINE Alu -13 299 136 4192 91 22 11 chrX 174359989 174360619 -2613521 + L1PB2 LINE L1 5515 6151 0 25 31 0 0 chrX 174360854 174360886 -2613254 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chrX 174361007 174361029 -2613111 + AT_rich Low_complexity Low_complexity 1 22 0 2449 82 0 3 chrX 174361339 174361642 -2612498 - AluSq SINE Alu -11 302 1 315 0 0 0 chrX 174362237 174362272 -2611868 + (TG)n Simple_repeat Simple_repeat 2 36 0 258 326 119 0 chrX 174362485 174362697 -2611443 - L1MC/D LINE L1 -532 5589 5492 239 161 18 0 chrX 174362855 174362911 -2611229 + (CA)n Simple_repeat Simple_repeat 2 58 0 260 345 0 0 chrX 174362953 174363095 -2611045 + T-rich Low_complexity Low_complexity 1 142 0 286 80 40 0 chrX 174363442 174363492 -2610648 + (TA)n Simple_repeat Simple_repeat 1 52 0 2313 129 35 7 chrX 174363583 174363986 -2610154 - L1MA5A LINE L1 -10 6287 5874 301 323 33 43 chrX 174364006 174364309 -2609831 - L1MEd LINE L1 -4910 1209 910 1943 109 0 0 chrX 174364384 174364680 -2609460 - AluSx SINE Alu 0 326 31 380 241 13 0 chrX 174364860 174364939 -2609201 + MER93a LTR ERV1 1 80 -322 1130 241 16 12 chrX 174365037 174365282 -2608858 + MER93a LTR ERV1 91 336 -66 210 145 0 116 chrX 174366606 174366675 -2607465 + (TCCCC)n Simple_repeat Simple_repeat 4 64 0 1828 114 0 8 chrX 174366751 174367006 -2607134 + AluSx SINE Alu 1 253 -59 491 103 75 46 chrX 174367114 174367288 -2606852 + (TATAA)n Simple_repeat Simple_repeat 2 180 0 1688 160 10 70 chrX 174367750 174368063 -2606077 - AluJo SINE Alu -18 294 1 195 42 0 0 chrX 174368221 174368245 -2605895 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 607 155 0 39 chrX 174368477 174368606 -2605534 + L1MB5 LINE L1 5860 5983 -191 25 31 0 0 chrX 174368646 174368678 -2605462 + AT_rich Low_complexity Low_complexity 1 32 0 976 171 28 0 chrX 174368683 174368864 -2605276 + L1MB5 LINE L1 5980 6165 -9 769 136 36 7 chrX 174369024 174369164 -2604976 - L1PA16 LINE L1 -304 5862 5719 295 50 0 0 chrX 174369162 174369202 -2604938 + L1PA15 LINE L1 5827 5866 -299 * 913 133 7 0 chrX 174369346 174369497 -2604643 + L1PA15 LINE L1 5910 6061 -104 359 46 93 33 chrX 174369642 174369793 -2604347 + (TA)n Simple_repeat Simple_repeat 2 161 0 264 143 0 0 chrX 174369793 174369835 -2604305 - AluJ/FLAM SINE Alu -244 58 17 27 0 0 0 chrX 174369894 174369921 -2604219 + AT_rich Low_complexity Low_complexity 1 27 0 233 66 66 33 chrX 174369960 174370021 -2604119 + (TATAG)n Simple_repeat Simple_repeat 2 64 0 319 154 65 18 chrX 174370035 174370204 -2603936 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 292 161 0 43 chrX 174370305 174370398 -2603742 + (TTATA)n Simple_repeat Simple_repeat 2 90 0 803 189 78 15 chrX 174371833 174372039 -2602101 + MER20 DNA MER1_type 1 219 0 879 229 57 0 chrX 174373732 174373942 -2600198 - MLT1A1 LTR MaLR 0 365 144 3640 160 70 89 chrX 174373959 174374141 -2599999 + MER21A LTR ERV1 5 189 -742 2015 159 3 0 chrX 174374141 174374449 -2599691 - AluJb SINE Alu -3 309 1 3640 160 70 89 chrX 174374449 174375185 -2598955 + MER21A LTR ERV1 189 905 -26 846 124 7 0 chrX 174375227 174375364 -2598776 - MLT1A1 LTR MaLR -227 138 1 308 136 0 0 chrX 174375620 174375679 -2598461 + L1PA15 LINE L1 6107 6165 0 2380 75 3 0 chrX 174375683 174375975 -2598165 + AluSp SINE Alu 1 293 -20 1312 228 80 13 chrX 174376166 174376539 -2597601 + MLT1C LTR MaLR 1 398 -69 41 48 0 0 chrX 174376550 174376612 -2597528 + AT_rich Low_complexity Low_complexity 1 62 0 30 69 0 0 chrX 174376713 174376771 -2597369 + AT_rich Low_complexity Low_complexity 1 58 0 73 52 0 0 chrX 174376818 174376933 -2597207 + AT_rich Low_complexity Low_complexity 1 115 0 73 76 0 0 chrX 174377001 174377158 -2596982 + AT_rich Low_complexity Low_complexity 1 157 0 217 195 46 11 chrX 174377199 174377286 -2596854 + (TTATA)n Simple_repeat Simple_repeat 3 92 0 207 150 20 88 chrX 174377366 174377513 -2596627 + (TTATA)n Simple_repeat Simple_repeat 1 137 0 55 89 0 0 chrX 174377541 174377687 -2596453 + AT_rich Low_complexity Low_complexity 1 146 0 279 169 0 17 chrX 174377737 174377796 -2596344 + MLT1B LTR MaLR 333 390 0 6795 184 149 23 chrX 174378732 174380291 -2593849 - MER52A LTR ERV1 0 1755 1 1845 144 42 23 chrX 174380335 174380689 -2593451 + MSTA LTR MaLR 1 361 -67 342 210 20 40 chrX 174380790 174380890 -2593250 + MLT1C LTR MaLR 368 465 -2 522 247 27 7 chrX 174380902 174381052 -2593088 + MER3 DNA MER1_type 52 204 -5 26 0 0 0 chrX 174382365 174382391 -2591749 + AT_rich Low_complexity Low_complexity 1 26 0 384 121 0 0 chrX 174382391 174382449 -2591691 - LTR29 LTR ERV1 -66 556 499 222 287 11 0 chrX 174383224 174383311 -2590829 + (TA)n Simple_repeat Simple_repeat 1 88 0 1225 164 5 0 chrX 174384938 174385133 -2589007 - AluSg/x SINE Alu -9 300 105 387 253 53 95 chrX 174385185 174385565 -2588575 - LTR37B LTR ERV1 -100 368 5 519 148 17 38 chrX 174386317 174386486 -2587654 + AluJo SINE Alu 81 308 -4 50 90 0 0 chrX 174386496 174386630 -2587510 + AT_rich Low_complexity Low_complexity 1 134 0 421 256 67 3 chrX 174386898 174387024 -2587116 - MIR SINE MIR -43 165 32 1033 220 48 34 chrX 174389280 174389548 -2584592 - L1PA16 LINE L1 -16 6150 5879 2451 70 0 3 chrX 174390066 174390366 -2583774 + AluSc SINE Alu 1 299 -10 2454 123 86 14 chrX 174390567 174390988 -2583152 + L1PA16 LINE L1 5712 6162 -4 22 56 0 0 chrX 174391822 174391858 -2582282 + AT_rich Low_complexity Low_complexity 1 36 0 1129 277 60 23 chrX 174392035 174392552 -2581588 - L1ME1 LINE L1 -44 6191 5656 3343 124 19 13 chrX 174392553 174393078 -2581062 - MER1A DNA MER1_type -1 528 1 961 231 46 8 chrX 174393078 174393530 -2580610 - L1ME1 LINE L1 -572 5663 5197 1204 220 15 61 chrX 174393563 174394035 -2580105 - L1ME1 LINE L1 -4041 2355 1906 625 106 30 8 chrX 174394486 174394618 -2579522 + (TAGA)n Simple_repeat Simple_repeat 4 138 0 21 0 0 0 chrX 174394664 174394685 -2579455 + AT_rich Low_complexity Low_complexity 1 21 0 1735 117 0 25 chrX 174395424 174395706 -2578434 - MER4A LTR ERV1 0 664 390 1920 100 19 10 chrX 174397492 174397802 -2576338 - L1PB1 LINE L1 -115 6036 5724 975 309 102 43 chrX 174397854 174398740 -2575400 - L2 LINE L2 -35 3278 2328 480 116 0 116 chrX 174398974 174398999 -2575141 + L1MA4 LINE L1 6028 6054 -246 1291 213 40 33 chrX 174398999 174399300 -2574840 + AluJo SINE Alu 1 303 -9 480 116 0 116 chrX 174399300 174399395 -2574745 + L1MA4 LINE L1 6054 6134 -166 1821 112 9 31 chrX 174400533 174400667 -2573473 + L1PB1 LINE L1 5478 5613 -538 1931 168 19 67 chrX 174400667 174401143 -2572997 - MLT2A2 LTR ERVL 0 453 1 1821 112 9 31 chrX 174401143 174401330 -2572810 + L1PB1 LINE L1 5613 5792 -359 276 149 0 0 chrX 174401330 174401377 -2572763 + (CA)n Simple_repeat Simple_repeat 2 48 0 400 100 0 0 chrX 174401377 174401437 -2572703 + L1PB1 LINE L1 5782 5841 -310 2470 117 5 0 chrX 174401441 174401809 -2572331 + L1PB1 LINE L1 5782 6151 0 254 261 0 34 chrX 174402165 174402253 -2571887 + MLT1I LTR MaLR 316 400 -9 261 370 84 30 chrX 174402315 174402683 -2571457 - L2 LINE L2 -2230 1084 697 942 323 105 45 chrX 174402688 174402807 -2571333 - L2 LINE L2 -2487 827 717 354 287 115 19 chrX 174402807 174402964 -2571176 + MER5B DNA MER1_type 3 174 -4 942 323 105 45 chrX 174402964 174403444 -2570696 - L2 LINE L2 -2597 717 192 2168 118 0 3 chrX 174404151 174404448 -2569692 - AluSq SINE Alu -17 296 1 22 56 0 0 chrX 174405118 174405154 -2568986 + AT_rich Low_complexity Low_complexity 1 36 0 346 154 33 0 chrX 174406466 174406557 -2567583 + (TAGG)n Simple_repeat Simple_repeat 1 94 0 479 208 11 22 chrX 174406619 174406797 -2567343 + (TAGG)n Simple_repeat Simple_repeat 3 178 0 188 203 27 0 chrX 174406809 174406883 -2567257 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 609 171 17 17 chrX 174406929 174407104 -2567036 + (TAGG)n Simple_repeat Simple_repeat 4 178 0 361 231 12 6 chrX 174407143 174407316 -2566824 + (TAGG)n Simple_repeat Simple_repeat 1 174 0 255 248 0 0 chrX 174407344 174407449 -2566691 + (TAGG)n Simple_repeat Simple_repeat 2 106 0 378 235 12 18 chrX 174407543 174407709 -2566431 + (TAGG)n Simple_repeat Simple_repeat 2 166 0 350 253 21 11 chrX 174407974 174408069 -2566071 + MER81 DNA DNA 18 113 -1 532 218 20 79 chrX 174458437 174458639 -2515501 - MER96B DNA MER1_type? -226 191 2 3250 179 13 24 chrX 174458987 174459659 -2514481 - L1MB3 LINE L1 -10 6173 5509 22 0 0 0 chrX 174459661 174459683 -2514457 + AT_rich Low_complexity Low_complexity 1 22 0 3343 127 42 14 chrX 174459683 174460249 -2513891 - L1MA5A LINE L1 -6 6291 5710 1519 216 79 89 chrX 174460318 174460429 -2513711 + LTR38B LTR ERV1 1 112 -498 2128 120 3 0 chrX 174460429 174460730 -2513410 - AluSx SINE Alu -10 302 1 1519 216 79 89 chrX 174460730 174461216 -2512924 + LTR38B LTR ERV1 112 592 -18 4050 130 57 28 chrX 174461339 174462063 -2512077 + L1PA16 LINE L1 5419 6163 -3 379 236 6 6 chrX 174462548 174462726 -2511414 + (TG)n Simple_repeat Simple_repeat 1 178 0 188 184 20 0 chrX 174462725 174462774 -2511366 + GA-rich Low_complexity Low_complexity 1 50 0 * 532 199 7 7 chrX 174463624 174463770 -2510370 + (TGGA)n Simple_repeat Simple_repeat 4 149 0 1833 194 12 0 chrX 174463778 174464113 -2510027 + MER7A DNA MER2_type 1 337 -9 241 167 17 17 chrX 174464144 174464204 -2509936 + (CATA)n Simple_repeat Simple_repeat 3 62 0 21 36 0 0 chrX 174464684 174464712 -2509428 + AT_rich Low_complexity Low_complexity 1 28 0 1566 148 22 25 chrX 174464866 174465143 -2508997 - L1PB4 LINE L1 -5 6151 5876 247 235 20 10 chrX 174465165 174465263 -2508877 + CT-rich Low_complexity Low_complexity 2 100 0 23 0 0 0 chrX 174466447 174466470 -2507670 + AT_rich Low_complexity Low_complexity 1 23 0 733 175 0 0 chrX 174466521 174466635 -2507505 - FLAM_C SINE Alu -15 118 5 353 237 26 66 chrX 174467227 174467379 -2506761 - MER101 LTR ERV1 -31 443 298 513 0 0 0 chrX 174467387 174467444 -2506696 + (CA)n Simple_repeat Simple_repeat 2 58 0 189 74 0 0 chrX 174467443 174467470 -2506670 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 * 225 196 0 0 chrX 174467470 174467516 -2506624 + (TA)n Simple_repeat Simple_repeat 2 47 0 2671 69 40 8 chrX 174467518 174467893 -2506247 - L1PA12 LINE L1 -3 6165 5779 2854 78 15 0 chrX 174467898 174468298 -2505842 + L1PA12 LINE L1 5380 5785 -389 538 83 0 0 chrX 174469165 174469249 -2504891 - L1PB1 LINE L1 -2 6149 6066 808 171 0 0 chrX 174469250 174469379 -2504761 - FLAM_A SINE Alu -4 129 1 1578 173 49 12 chrX 174469460 174469806 -2504334 + L1MA7 LINE L1 5833 6191 -100 2239 133 0 0 chrX 174469882 174470191 -2503949 - AluSx SINE Alu -3 309 1 4210 101 12 71 chrX 174470474 174471206 -2502934 - L1PB3 LINE L1 -2 6152 5464 351 238 40 0 chrX 174471244 174471345 -2502795 + MLT1D LTR MaLR 1 105 -400 1574 92 4 31 chrX 174472159 174472419 -2501721 + L1MA1 LINE L1 5978 6230 -72 2389 128 0 22 chrX 174472924 174473292 -2500848 + THE1B LTR MaLR 1 360 -4 616 246 134 45 chrX 174473597 174473910 -2500230 + MLT1C LTR MaLR 5 345 -122 1249 215 61 86 chrX 174473924 174474399 -2499741 + MLT1C LTR MaLR 5 467 0 21 36 0 0 chrX 174474445 174474473 -2499667 + AT_rich Low_complexity Low_complexity 1 28 0 4652 205 37 6 chrX 174474511 174475841 -2498299 + L1MC1 LINE L1 4897 6259 -74 781 271 104 26 chrX 174475896 174476280 -2497860 - MLT1C LTR MaLR -53 414 1 1895 207 8 51 chrX 174477357 174477496 -2496644 + L1MB5 LINE L1 5695 5838 -336 1753 173 23 13 chrX 174477496 174477803 -2496337 - AluJo SINE Alu -2 310 1 1895 207 8 51 chrX 174477803 174478155 -2495985 + L1MB5 LINE L1 5838 6165 -9 201 147 0 0 chrX 174478187 174478221 -2495919 + (A)n Simple_repeat Simple_repeat 1 34 0 300 269 170 20 chrX 174478426 174478570 -2495570 + MER5A DNA MER1_type 14 189 0 1836 151 30 10 chrX 174479210 174479694 -2494446 + AluJo SINE Alu 1 312 0 1264 94 0 0 chrX 174479499 174479816 -2494324 + (GAAA)n Simple_repeat Simple_repeat 1 317 0 341 305 37 63 chrX 174480191 174480381 -2493759 + L1M4 LINE L1 2724 2908 -3238 1948 179 3 0 chrX 174480435 174480737 -2493403 + AluJo SINE Alu 1 303 -9 288 0 0 0 chrX 174480737 174480769 -2493371 + (TA)n Simple_repeat Simple_repeat 2 33 0 255 202 11 180 chrX 174481028 174481211 -2492929 - MLT1H LTR MaLR -395 154 3 221 92 92 0 chrX 174481299 174481375 -2492765 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 975 114 17 6 chrX 174481388 174481563 -2492577 + (TAGA)n Simple_repeat Simple_repeat 1 177 0 696 139 17 17 chrX 174481602 174481782 -2492358 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 21 36 0 0 chrX 174481881 174481909 -2492231 + AT_rich Low_complexity Low_complexity 1 28 0 4757 133 18 2 chrX 174482440 174483273 -2490867 - L1PB3 LINE L1 -4 6150 5305 541 266 28 0 chrX 174484040 174484183 -2489957 - MER20 DNA MER1_type -65 154 8 3505 101 2 2 chrX 174484183 174484680 -2489460 + L1PA13 LINE L1 5666 6162 -1 1898 131 10 74 chrX 174486380 174486558 -2487582 + MLT1B LTR MaLR 2 190 -206 2166 96 4 0 chrX 174486558 174486872 -2487268 + AluY SINE Alu 1 315 0 1898 131 10 74 chrX 174486872 174486886 -2487254 + MLT1B LTR MaLR 190 203 -193 2359 92 3 0 chrX 174486886 174487192 -2486948 + AluSp SINE Alu 1 307 -6 1898 131 10 74 chrX 174487192 174487414 -2486726 + MLT1B LTR MaLR 203 396 0 551 198 16 2 chrX 174487414 174487607 -2486533 + MLT1B LTR MaLR 158 390 0 351 94 0 0 chrX 174487701 174487754 -2486386 - MLT2A2 LTR ERVL -2 451 399 240 214 0 0 chrX 174487755 174487811 -2486329 + (TA)n Simple_repeat Simple_repeat 2 57 0 2949 77 14 22 chrX 174487811 174488227 -2485913 - MLT2A2 LTR ERVL -40 413 1 612 243 145 26 chrX 174488611 174488915 -2485225 + MLT1D LTR MaLR 22 361 -144 356 119 34 0 chrX 174488941 174489000 -2485140 - MLT2A2 LTR ERVL -136 317 257 1088 243 66 30 chrX 174489012 174489419 -2484721 + MLT1C LTR MaLR 46 467 0 2171 193 54 9 chrX 174489720 174490165 -2483975 - MER70A LTR ERVL -7 465 1 1685 174 3 11 chrX 174491040 174491322 -2482818 - AluJo SINE Alu -1 311 32 214 370 28 28 chrX 174491723 174491831 -2482309 - MIR SINE MIR -152 110 3 1418 186 127 28 chrX 174491974 174492367 -2481773 + MSTB1 LTR MaLR 1 432 0 392 182 0 0 chrX 174492897 174492963 -2481177 - MER5A DNA MER1_type -123 66 1 362 281 91 39 chrX 174493066 174493297 -2480843 + MLT1K LTR MaLR 346 588 0 3488 15 0 0 chrX 174493766 174494165 -2479975 + L1PA2 LINE L1 5756 6154 -1 288 0 0 0 chrX 174494559 174494591 -2479549 + (CA)n Simple_repeat Simple_repeat 1 32 0 639 336 34 0 chrX 174495287 174495495 -2478645 + MIR SINE MIR 30 244 -18 378 87 130 0 chrX 174495737 174495806 -2478334 - MADE1 DNA Mariner 0 80 3 * 1702 231 61 9 chrX 174495806 174496262 -2477878 - MLT1D LTR MaLR -20 485 6 287 152 0 0 chrX 174496270 174496316 -2477824 - MLT1D LTR MaLR -457 48 3 284 128 21 0 chrX 174496319 174496366 -2477774 - MLT1D LTR MaLR -455 50 3 300 125 42 0 chrX 174496369 174496417 -2477723 - MLT1D LTR MaLR -455 50 1 274 167 21 0 chrX 174496418 174496466 -2477674 - MLT1D LTR MaLR -455 50 2 248 78 20 59 chrX 174496559 174496610 -2477530 - MLT1D LTR MaLR -456 49 1 865 209 5 0 chrX 174497036 174497223 -2476917 + L1MB7 LINE L1 5328 5515 -797 482 170 0 40 chrX 174497369 174497469 -2476671 - AluJ/FLAM SINE Alu -214 98 3 598 219 26 0 chrX 174497492 174497643 -2476497 + L1MB7 LINE L1 6009 6163 -21 1997 142 0 0 chrX 174497700 174498017 -2476123 + L1PB4 LINE L1 5839 6155 -1 1792 229 53 25 chrX 174498279 174498789 -2475351 + MER68 LTR ERV1 28 551 -11 810 159 0 0 chrX 174499005 174499131 -2475009 + FLAM_C SINE Alu 1 126 -17 1683 197 0 25 chrX 174499141 174499461 -2474679 + AluJo SINE Alu 1 312 0 2845 161 10 2 chrX 174500060 174500570 -2473570 + L1PB4 LINE L1 5634 6147 -9 2218 132 0 39 chrX 174500749 174501090 -2473050 + L1PA13 LINE L1 5791 6117 -46 2037 159 24 11 chrX 174501090 174501460 -2472680 - THE1C LTR MaLR 0 375 1 2218 132 0 39 chrX 174501460 174501504 -2472636 + L1PA13 LINE L1 6117 6161 -2 2179 125 22 5 chrX 174501504 174501851 -2472289 + L1MA5A LINE L1 5925 6297 0 225 289 26 61 chrX 174502147 174502261 -2471879 - MER68 LTR ERV1 -75 487 378 518 240 0 0 chrX 174502300 174502421 -2471719 - MER68 LTR ERV1 -273 289 169 3775 183 19 3 chrX 174503675 174504424 -2469716 - L1PB4 LINE L1 -4 6152 5392 255 197 26 40 chrX 174504521 174504597 -2469543 + L1MB7 LINE L1 5472 5546 -628 2553 198 12 54 chrX 174504615 174505296 -2468844 + L1MB7 LINE L1 5520 6171 -13 1849 204 60 20 chrX 174506169 174506629 -2467511 - MLT2B1 LTR ERVL -20 472 12 319 77 19 19 chrX 174506695 174506747 -2467393 - L1PA16 LINE L1 -14 6152 6101 270 0 0 0 chrX 174507570 174507600 -2466540 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 2501 137 16 56 chrX 174508023 174508469 -2465671 - MSTA LTR MaLR 0 428 1 1374 107 11 10 chrX 174509012 174509266 -2464874 - Tigger2 DNA MER2_type -171 2547 3 3410 142 7 12 chrX 174509486 174510085 -2464055 - L1PB4 LINE L1 -3 6153 5558 2559 102 23 0 chrX 174510091 174510445 -2463695 + THE1B LTR MaLR 1 362 -2 3589 115 11 15 chrX 174511378 174511907 -2462233 + MER1A DNA MER1_type 1 527 0 366 287 0 0 chrX 174512289 174512390 -2461750 + MER5A DNA MER1_type 9 109 -80 1371 235 48 14 chrX 174512756 174512920 -2461220 - MLT1C LTR MaLR -16 451 294 2315 204 28 22 chrX 174512920 174513429 -2460711 - MLT2B2 LTR ERVL 0 515 4 1371 235 48 14 chrX 174513429 174513698 -2460442 - MLT1C LTR MaLR -173 294 3 2187 203 25 48 chrX 174514672 174515155 -2458985 + MER70A LTR ERVL 1 472 0 2174 176 21 28 chrX 174516061 174516498 -2457642 + Tigger2a DNA MER2_type 1 434 0 3925 119 5 5 chrX 174516592 174517174 -2456966 + L1PA15 LINE L1 5579 6160 -5 2413 211 61 2 chrX 174517533 174517571 -2456569 - MLT2B1 LTR ERVL -2 518 484 937 69 34 11 chrX 174517571 174517746 -2456394 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 2413 211 61 2 chrX 174517746 174518196 -2455944 - MLT2B1 LTR ERVL -36 484 1 180 0 0 0 chrX 174519002 174519022 -2455118 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2171 98 30 3 chrX 174519207 174519503 -2454637 + AluSx SINE Alu 1 304 -8 1482 226 6 6 chrX 174519712 174520061 -2454079 + L1PA16 LINE L1 5796 6144 -22 1844 158 10 7 chrX 174521009 174521300 -2452840 + AluJo SINE Alu 1 292 -20 322 221 12 12 chrX 174521356 174521442 -2452698 - L1ME4a LINE L1 -70 6051 5966 331 132 88 0 chrX 174521514 174521582 -2452558 - L1PA16 LINE L1 0 6166 6093 1983 129 25 0 chrX 174521582 174521899 -2452241 + L1PA16 LINE L1 5771 6095 -71 422 158 184 44 chrX 174522056 174522214 -2451926 - MER45 DNA AcHobo 0 1581 1402 311 253 53 0 chrX 174522226 174522321 -2451819 - L1MA9 LINE L1 -32 6280 6181 2759 200 20 2 chrX 174522322 174522917 -2451223 - L1MA9 LINE L1 -230 6082 5477 715 199 78 15 chrX 174522920 174523126 -2451014 + L1 LINE L1 5063 5281 -865 1895 113 154 6 chrX 174523143 174523487 -2450653 - MSTA LTR MaLR -33 395 1 420 144 117 27 chrX 174523487 174523598 -2450542 + L1M LINE L1 5275 5395 -917 1370 184 65 16 chrX 174523598 174523919 -2450221 + MSTB1 LTR MaLR 1 337 -95 1095 233 12 6 chrX 174524036 174524358 -2449782 + L1 LINE L1 4285 4608 -1538 2179 159 14 23 chrX 174525387 174525814 -2448326 + LTR23 LTR ERV1 15 437 0 261 57 0 0 chrX 174525858 174525893 -2448247 + (CA)n Simple_repeat Simple_repeat 2 36 0 2194 130 0 0 chrX 174526089 174526390 -2447750 + AluSx SINE Alu 1 301 -11 430 267 32 12 chrX 174526707 174526904 -2447236 + MER93a LTR ERV1 198 398 -5 482 133 41 0 chrX 174527377 174527475 -2446665 - L1P4 LINE L1 -722 5439 5338 1285 89 0 0 chrX 174527485 174527643 -2446497 + AluSg/x SINE Alu 145 302 -8 990 136 29 15 chrX 174527643 174527849 -2446291 - L1P4 LINE L1 -800 5346 5138 531 195 51 0 chrX 174528464 174528582 -2445558 + L1MB5 LINE L1 5973 6096 -78 296 192 86 102 chrX 174528582 174528618 -2445522 + LTR49 LTR ERV1 332 367 -420 2151 216 26 56 chrX 174528618 174529188 -2444952 - MLT2B3 LTR ERVL 0 554 2 296 192 86 102 chrX 174529188 174529368 -2444772 + LTR49 LTR ERV1 367 737 -50 1959 217 102 15 chrX 174529388 174529977 -2444163 - LTR48B LTR ERV1 -2 642 3 363 167 24 24 chrX 174530499 174530583 -2443557 - L1MC2 LINE L1 -8 6336 6253 25 0 0 0 chrX 174530628 174530653 -2443487 + AT_rich Low_complexity Low_complexity 1 25 0 206 216 27 14 chrX 174530892 174530966 -2443174 + (TA)n Simple_repeat Simple_repeat 1 75 0 21 0 0 0 chrX 174531095 174531116 -2443024 + AT_rich Low_complexity Low_complexity 1 21 0 889 249 93 22 chrX 174531533 174531849 -2442291 + MSTD LTR MaLR 1 396 0 2095 110 6 25 chrX 174532042 174532360 -2441780 - AluSx SINE Alu 0 312 1 1739 132 42 4 chrX 174532684 174532949 -2441191 - AluSg SINE Alu -1 309 35 271 128 51 13 chrX 174534006 174534084 -2440056 + CT-rich Low_complexity Low_complexity 2 82 0 233 274 0 0 chrX 174534515 174534577 -2439563 - MER68 LTR ERV1 -265 297 236 775 176 7 7 chrX 174534953 174535095 -2439045 + MLT1A1 LTR MaLR 10 151 -214 1023 210 5 10 chrX 174535100 174535295 -2438845 + AluJo SINE Alu 61 254 -58 577 232 40 7 chrX 174535418 174535569 -2438571 + MLT1A1 LTR MaLR 219 374 0 236 330 33 11 chrX 174535813 174535904 -2438236 + MIR SINE MIR 10 102 -160 1880 167 0 16 chrX 174537068 174537385 -2436755 - AluSx SINE Alu 0 312 1 243 0 0 0 chrX 174537795 174537822 -2436318 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 53 0 0 chrX 174537822 174537860 -2436280 + AT_rich Low_complexity Low_complexity 1 38 0 913 258 19 19 chrX 174538954 174539214 -2434926 + MLT1D LTR MaLR 246 505 0 1141 187 34 8 chrX 174539845 174540080 -2434060 - MSTB1 LTR MaLR 0 432 192 458 117 68 0 chrX 174540080 174540183 -2433957 + CT-rich Low_complexity Low_complexity 4 113 0 1944 150 6 31 chrX 174540201 174540521 -2433619 - AluJb SINE Alu 0 312 1 892 246 5 0 chrX 174540522 174540717 -2433423 - MSTB1 LTR MaLR -230 196 1 269 287 75 11 chrX 174541048 174541142 -2432998 + MLT1I LTR MaLR 160 259 -150 1681 100 19 8 chrX 174541441 174541700 -2432440 - MER41D LTR ERV1 -295 262 1 2156 239 11 0 chrX 174541814 174542291 -2431849 - MER68 LTR ERV1 -4 558 77 994 223 29 71 chrX 174542300 174542682 -2431458 + MLT1A2 LTR MaLR 9 374 0 347 231 0 39 chrX 174542682 174542764 -2431376 - MER68 LTR ERV1 -484 78 1 595 218 6 46 chrX 174542833 174542939 -2431201 - LTR34 LTR ERV1 -4 695 597 3692 107 26 35 chrX 174542939 174543544 -2430596 - MER4A LTR ERV1 0 600 1 595 218 6 46 chrX 174543544 174543611 -2430529 - LTR34 LTR ERV1 -102 597 529 866 127 76 13 chrX 174543613 174543770 -2430370 - LTR34 LTR ERV1 -328 371 205 204 40 0 0 chrX 174545368 174545393 -2428747 + (CA)n Simple_repeat Simple_repeat 2 26 0 280 211 30 8 chrX 174545425 174545558 -2428582 + (TA)n Simple_repeat Simple_repeat 1 136 0 36 53 0 0 chrX 174545565 174545622 -2428518 + AT_rich Low_complexity Low_complexity 1 57 0 2386 161 57 0 chrX 174546149 174546585 -2427555 + LOR1b LTR ERV1 1 461 0 416 183 11 0 chrX 174548216 174548309 -2425831 + GA-rich Low_complexity Low_complexity 3 96 0 6521 74 13 0 chrX 174548485 174549780 -2424360 - L1P3 LINE L1 -439 5733 4425 462 250 93 56 chrX 174550144 174550267 -2423873 - L1MC4 LINE L1 -15 8027 7910 393 22 0 0 chrX 174550267 174550313 -2423827 + (CA)n Simple_repeat Simple_repeat 1 46 0 462 250 93 56 chrX 174550313 174550457 -2423683 - L1MC4 LINE L1 -132 7910 7750 247 259 49 98 chrX 174550781 174550882 -2423258 + L2 LINE L2 1887 1981 -1333 2213 122 0 0 chrX 174550882 174551176 -2422964 - AluSx SINE Alu -16 296 3 247 259 49 98 chrX 174551176 174551217 -2422923 + L2 LINE L2 1981 2022 -1292 1271 142 4 24 chrX 174551378 174551624 -2422516 - L1PB2 LINE L1 -202 5949 5709 252 221 0 42 chrX 174551765 174551860 -2422280 - L1MA7 LINE L1 -58 6233 6143 1990 148 127 16 chrX 174552219 174552604 -2421536 - MSTA LTR MaLR 0 428 1 998 164 28 9 chrX 174552756 174552969 -2421171 + L1MB7 LINE L1 5954 6170 -14 21 0 0 0 chrX 174553063 174553084 -2421056 + AT_rich Low_complexity Low_complexity 1 21 0 2568 67 0 3 chrX 174553295 174553607 -2420533 + AluY SINE Alu 1 311 0 221 167 19 0 chrX 174554035 174554089 -2420051 + CT-rich Low_complexity Low_complexity 2 56 0 1502 176 11 4 chrX 174554219 174554492 -2419648 + AluJo SINE Alu 1 275 -37 236 308 26 51 chrX 174554512 174554590 -2419550 - MIR3 SINE MIR -31 177 102 180 77 0 0 chrX 174555262 174555288 -2418852 + (T)n Simple_repeat Simple_repeat 1 26 0 3549 94 0 0 chrX 174555306 174555805 -2418335 - L1PA15 LINE L1 -82 6083 5585 1066 238 87 67 chrX 174556297 174556805 -2417335 - MER77 LTR ERV1 -7 598 81 509 125 0 0 chrX 174557043 174557115 -2417025 - AluJ/FRAM SINE Alu -24 288 217 678 188 101 111 chrX 174557130 174557418 -2416722 - L1MA9 LINE L1 -22 6290 6006 1154 195 59 0 chrX 174557418 174557690 -2416450 + L1MA8 LINE L1 5679 5966 -325 1373 191 74 83 chrX 174558179 174558335 -2415805 + MLT1C LTR MaLR 34 190 -277 1579 171 15 7 chrX 174558335 174558609 -2415531 + AluJo SINE Alu 1 276 -36 199 54 54 0 chrX 174558617 174558654 -2415486 + T-rich Low_complexity Low_complexity 2 40 0 1373 191 74 83 chrX 174558654 174558922 -2415218 + MLT1C LTR MaLR 197 463 -4 3704 135 17 2 chrX 174559571 174560156 -2413984 + L1PA16 LINE L1 5564 6157 -9 285 310 41 53 chrX 174560171 174560342 -2413798 + MIR SINE MIR 20 188 -74 2334 81 17 0 chrX 174560846 174561141 -2412999 + AluSg SINE Alu 1 300 -10 1575 166 24 28 chrX 174561233 174561390 -2412750 - AluJo SINE Alu -24 288 131 207 0 0 0 chrX 174561390 174561413 -2412727 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1575 166 24 28 chrX 174561413 174561544 -2412596 - AluJo SINE Alu -181 131 1 204 188 0 0 chrX 174561631 174561663 -2412477 + polypurine Low_complexity Low_complexity 1 32 0 2144 120 3 0 chrX 174561665 174561957 -2412183 + AluSx SINE Alu 14 306 -6 666 264 46 8 chrX 174562157 174562396 -2411744 - MLT1E3 LTR MaLR 0 624 377 838 199 0 20 chrX 174562460 174562611 -2411529 - AluJb SINE Alu -30 282 135 1323 153 0 19 chrX 174562611 174562827 -2411313 - AluJo SINE Alu -6 306 95 502 257 72 7 chrX 174562845 174562997 -2411143 - MLT1E3 LTR MaLR -341 252 91 1803 174 0 3 chrX 174563579 174563866 -2410274 - AluJb SINE Alu -26 286 1 1717 188 6 6 chrX 174564535 174564865 -2409275 - L1PB4 LINE L1 -2 6154 5825 749 133 23 0 chrX 174564990 174565118 -2409022 - L1PB4 LINE L1 -374 5782 5652 1536 185 15 4 chrX 174566785 174567055 -2407085 + AluJo SINE Alu 1 273 -39 2350 101 48 25 chrX 174567251 174567607 -2406533 - THE1B LTR MaLR 0 364 1 496 267 73 27 chrX 174568298 174568448 -2405692 + MLT1E LTR MaLR 2 158 -435 410 228 120 0 chrX 174568526 174568618 -2405522 + MLT1E LTR MaLR 349 451 -142 2050 144 11 30 chrX 174568641 174569035 -2405105 - L1M2 LINE L1 -360 5806 5417 682 208 30 53 chrX 174569009 174569093 -2405047 + L1ME1 LINE L1 5690 5774 -392 * 3383 124 9 49 chrX 174569093 174569642 -2404498 + MER1A DNA MER1_type 1 527 0 682 208 30 53 chrX 174569642 174569821 -2404319 + L1ME1 LINE L1 5774 5947 -219 728 170 13 22 chrX 174569989 174570183 -2403957 - L1M2 LINE L1 -689 5479 5304 2579 55 0 0 chrX 174570608 174570919 -2403221 + AluY SINE Alu 1 311 0 508 288 47 62 chrX 174571022 174571342 -2402798 - L1ME1 LINE L1 -5 6161 5847 710 251 125 48 chrX 174571342 174571717 -2402423 - LTR52 LTR ERVL -5 416 13 3972 134 115 9 chrX 174571717 174572401 -2401739 + L1MA4A LINE L1 5266 6043 -260 2979 141 32 2 chrX 174572401 174572898 -2401242 + MER75 DNA T2_type 1 512 -2 3972 134 115 9 chrX 174572898 174572987 -2401153 + L1MA4A LINE L1 6043 6121 -182 30 0 0 0 chrX 174573016 174573046 -2401094 + AT_rich Low_complexity Low_complexity 1 30 0 32 81 0 0 chrX 174573286 174573360 -2400780 + AT_rich Low_complexity Low_complexity 1 74 0 261 250 11 0 chrX 174573363 174573477 -2400663 + (TA)n Simple_repeat Simple_repeat 1 115 0 4130 154 4 1 chrX 174573546 174574222 -2399918 + L1PA15 LINE L1 5462 6139 -26 339 98 0 0 chrX 174575181 174575242 -2398898 - L1MA1 LINE L1 0 6302 6242 1377 78 0 0 chrX 174575404 174575584 -2398556 - L1P LINE L1 -2319 3827 3648 6941 53 11 1 chrX 174575584 174576910 -2397230 + L1PA7 LINE L1 4816 6151 -3 1379 247 85 34 chrX 174577414 174577838 -2396302 + L1MC4a LINE L1 5270 5426 -748 1798 168 52 19 chrX 174577838 174578201 -2395939 + THE1C LTR MaLR 1 375 0 1379 247 85 34 chrX 174578201 174578369 -2395771 + L1MC4a LINE L1 5426 5584 -590 261 179 38 19 chrX 174579766 174579872 -2394268 + GA-rich Low_complexity Low_complexity 2 109 0 182 146 0 24 chrX 174579920 174579961 -2394179 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 189 213 0 0 chrX 174579978 174580025 -2394115 + GA-rich Low_complexity Low_complexity 3 49 0 202 101 72 0 chrX 174580975 174581044 -2393096 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 1855 175 23 0 chrX 174581278 174581581 -2392559 - AluJo SINE Alu 0 312 3 793 215 89 39 chrX 174581601 174581923 -2392217 + MLT1C LTR MaLR 1 345 -122 844 214 110 47 chrX 174581940 174582257 -2391883 + MLT1C LTR MaLR 8 344 -123 1027 251 83 47 chrX 174582272 174582719 -2391421 + MLT1C LTR MaLR 5 467 0 460 186 23 0 chrX 174583820 174583906 -2390234 + AluJb SINE Alu 44 131 -181 1986 96 75 4 chrX 174583914 174584195 -2389945 + AluSx SINE Alu 4 304 -8 3752 128 24 0 chrX 174585826 174586449 -2387691 + L1PA13 LINE L1 5552 6188 0 530 152 0 22 chrX 174586475 174586567 -2387573 + AluJo SINE Alu 1 90 -222 759 98 9 0 chrX 174586569 174586681 -2387459 - L1PA13 LINE L1 -165 5998 5886 1456 136 0 21 chrX 174586681 174586916 -2387224 + AluJo SINE Alu 82 311 -1 213 100 60 0 chrX 174586950 174587000 -2387140 + GA-rich Low_complexity Low_complexity 1 53 0 233 221 15 0 chrX 174587654 174587722 -2386418 + (CATA)n Simple_repeat Simple_repeat 2 70 0 40 83 0 0 chrX 174587764 174587860 -2386280 + AT_rich Low_complexity Low_complexity 1 96 0 23 0 0 0 chrX 174587898 174587921 -2386219 + AT_rich Low_complexity Low_complexity 1 23 0 293 216 43 14 chrX 174587950 174588089 -2386051 + (TA)n Simple_repeat Simple_repeat 2 144 0 248 344 0 0 chrX 174588944 174589037 -2385103 - L1MEc LINE L1 -2551 3664 3572 286 288 12 31 chrX 174589110 174589270 -2384870 - L1MEc LINE L1 -2665 3550 3394 492 274 69 56 chrX 174590343 174590608 -2383532 - L1MEc LINE L1 -3655 2560 2320 325 94 0 0 chrX 174590608 174590661 -2383479 + L1PA15 LINE L1 6111 6163 -2 492 274 69 56 chrX 174590661 174590929 -2383211 - L1MEc LINE L1 -3895 2320 2057 3497 240 40 45 chrX 174590929 174592058 -2382082 + Charlie5 DNA MER1_type 1 1125 -1499 2207 121 7 0 chrX 174592058 174592363 -2381777 + AluSx SINE Alu 3 309 -3 3497 240 40 45 chrX 174592363 174592504 -2381636 + Charlie5 DNA MER1_type 1125 1265 -1359 734 151 8 8 chrX 174592504 174592630 -2381510 - MER41A LTR ERV1 0 554 429 3556 100 13 7 chrX 174592747 174593287 -2380853 - MER41B LTR ERV1 -92 543 1 180 0 0 0 chrX 174593782 174593802 -2380338 + (T)n Simple_repeat Simple_repeat 1 20 0 1012 239 42 72 chrX 174594001 174594403 -2379737 - Charlie5 DNA MER1_type -1501 1111 722 5132 84 17 0 chrX 174594403 174595093 -2379047 + L1PA13 LINE L1 5439 6140 -23 405 267 64 6 chrX 174595093 174595265 -2378875 - Charlie5 DNA MER1_type -1878 734 553 1400 108 0 0 chrX 174595985 174596189 -2377951 + L1PA14 LINE L1 5957 6160 -1 68 48 0 0 chrX 174596240 174596343 -2377797 + AT_rich Low_complexity Low_complexity 1 103 0 3123 128 59 20 chrX 174596435 174596942 -2377198 - MER1A DNA MER1_type 0 527 1 342 289 169 62 chrX 174596986 174597342 -2376798 - LTR16A1 LTR ERVL 0 457 64 248 120 20 0 chrX 174597798 174597848 -2376292 + (TA)n Simple_repeat Simple_repeat 2 52 0 1969 136 7 3 chrX 174597965 174598260 -2375880 + AluSx SINE Alu 3 298 -14 198 0 0 0 chrX 174598881 174598903 -2375237 + (T)n Simple_repeat Simple_repeat 1 22 0 268 194 0 90 chrX 174599080 174599147 -2374993 - MER20 DNA MER1_type -153 66 6 * 838 234 15 15 chrX 174599117 174599322 -2374818 + MER20 DNA MER1_type 14 218 -1 213 39 0 0 chrX 174599772 174599798 -2374342 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2394 160 17 72 chrX 174601066 174601609 -2372531 + L1MA7 LINE L1 5773 6285 -6 3382 185 65 12 chrX 174601787 174602543 -2371597 + L1MA9 LINE L1 5489 6284 -28 183 159 0 72 chrX 174603809 174603878 -2370262 + CT-rich Low_complexity Low_complexity 4 67 0 237 266 0 0 chrX 174605170 174605234 -2368906 - MER20 DNA MER1_type 0 219 156 321 397 57 10 chrX 174605518 174605712 -2368428 - MIR SINE MIR -40 222 20 1235 236 81 17 chrX 174606587 174606884 -2367256 - MSTD LTR MaLR 0 396 81 26 0 0 0 chrX 174606884 174606910 -2367230 + AT_rich Low_complexity Low_complexity 1 26 0 1696 196 21 0 chrX 174606916 174607201 -2366939 - AluJo SINE Alu -21 291 1 233 267 145 46 chrX 174607443 174607574 -2366566 - MIR3 SINE MIR -63 145 2 324 94 0 0 chrX 174607891 174607944 -2366196 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 35 0 0 chrX 174608284 174608313 -2365827 + AT_rich Low_complexity Low_complexity 1 29 0 2040 143 0 0 chrX 174609574 174609868 -2364272 - AluSx SINE Alu -16 296 3 251 256 35 23 chrX 174609904 174609990 -2364150 - HAL1b LINE L1 -781 567 481 616 306 30 10 chrX 174610332 174610729 -2363411 + L1ME1 LINE L1 5565 5972 -194 2210 100 0 25 chrX 174610753 174611072 -2363068 - AluSx SINE Alu -1 311 1 423 297 63 36 chrX 174611203 174611425 -2362715 + L1ME1 LINE L1 5932 6159 -7 1934 134 26 67 chrX 174611562 174611949 -2362191 - L1PA14 LINE L1 -3 6158 5788 1954 154 27 29 chrX 174612007 174612383 -2361757 - THE1C LTR MaLR 0 375 1 207 0 0 0 chrX 174612616 174612639 -2361501 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 1301 33 6 22 chrX 174612665 174612847 -2361293 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 293 118 20 0 chrX 174612847 174612898 -2361242 + GA-rich Low_complexity Low_complexity 3 54 0 1927 104 0 7 chrX 174613022 174613311 -2360829 - L1PA15 LINE L1 0 6165 5879 311 36 455 0 chrX 174614002 174614057 -2360083 + MADE1 DNA Mariner 1 80 0 2471 133 5 5 chrX 174614467 174614852 -2359288 - L1PA16 LINE L1 -9 6157 5773 2322 73 7 20 chrX 174615684 174615985 -2358155 - AluY SINE Alu -15 296 1 865 192 11 16 chrX 174616462 174616644 -2357496 - MER20 DNA MER1_type -3 216 36 1406 269 38 36 chrX 174616951 174617505 -2356635 + MLT1E2 LTR MaLR 41 595 -31 885 217 0 0 chrX 174617673 174617825 -2356315 + FRAM SINE Alu 1 151 -25 4992 80 10 0 chrX 174617911 174618627 -2355513 - L1P LINE L1 -1368 4778 4056 1701 173 35 0 chrX 174620160 174620331 -2353809 - AluJo SINE Alu -13 299 112 1022 101 11 17 chrX 174620331 174620509 -2353631 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 1701 173 35 0 chrX 174620509 174620626 -2353514 - AluJo SINE Alu -200 112 1 267 190 0 0 chrX 174620854 174620912 -2353228 + (ATG)n Simple_repeat Simple_repeat 2 59 0 2018 119 26 10 chrX 174621215 174621517 -2352623 - AluSx SINE Alu -5 307 1 23 0 0 0 chrX 174622223 174622246 -2351894 + AT_rich Low_complexity Low_complexity 1 23 0 2671 161 8 6 chrX 174622973 174623456 -2350684 + L1PA16 LINE L1 5674 6157 -9 331 149 27 0 chrX 174623821 174623895 -2350245 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 907 219 37 63 chrX 174623947 174624287 -2349853 - MLT2B1 LTR ERVL -67 453 6 201 320 67 0 chrX 174625112 174625187 -2348953 + polypurine Low_complexity Low_complexity 3 82 0 275 49 24 0 chrX 174625262 174625303 -2348837 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 1969 102 4 4 chrX 174626006 174626271 -2347869 + AluSq SINE Alu 1 265 -48 189 0 0 0 chrX 174626307 174626328 -2347812 + (TAA)n Simple_repeat Simple_repeat 2 22 0 947 263 128 5 chrX 174626543 174627139 -2347001 + L1ME LINE L1 3839 4507 -1639 * 1106 242 79 36 chrX 174627137 174627664 -2346476 + L1ME LINE L1 5232 5779 -387 712 163 69 6 chrX 174627769 174627929 -2346211 + L1MA4 LINE L1 6120 6289 -11 327 332 56 42 chrX 174628080 174628294 -2345846 + MIR SINE MIR 31 247 -15 225 94 0 0 chrX 174628306 174628338 -2345802 + (TA)n Simple_repeat Simple_repeat 2 33 0 286 206 9 92 chrX 174628873 174629101 -2345039 - MSTB1 LTR MaLR 0 432 224 3711 81 2 2 chrX 174629222 174629714 -2344426 - LTR3b LTR ERVK -8 492 1 254 167 0 0 chrX 174629714 174629762 -2344378 - L1MA4 LINE L1 -217 6083 6036 1795 163 10 3 chrX 174629762 174630051 -2344089 + AluJo SINE Alu 5 295 -17 641 373 86 9 chrX 174630130 174630559 -2343581 - L2 LINE L2 -1689 1625 1164 476 315 51 35 chrX 174630747 174631004 -2343136 - L2 LINE L2 -2200 1114 854 560 210 0 0 chrX 174631081 174631205 -2342935 + L1MB3 LINE L1 6059 6182 -1 1833 150 3 10 chrX 174631238 174631531 -2342609 + AluJo SINE Alu 1 291 -21 234 91 0 0 chrX 174631531 174631564 -2342576 + (GGA)n Simple_repeat Simple_repeat 1 33 0 1968 149 0 3 chrX 174632869 174633171 -2340969 - AluJb SINE Alu -7 305 5 314 195 49 12 chrX 174633351 174633433 -2340707 + MLT1I LTR MaLR 318 402 -7 2460 46 0 13 chrX 174633527 174633832 -2340308 + AluY SINE Alu 1 301 -10 297 0 0 0 chrX 174633938 174633971 -2340169 + (CA)n Simple_repeat Simple_repeat 2 34 0 998 68 28 11 chrX 174635221 174635397 -2338743 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 248 167 46 42 chrX 174635441 174635666 -2338474 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 392 124 46 52 chrX 174635684 174635837 -2338303 + (TAGA)n Simple_repeat Simple_repeat 3 154 0 512 55 22 22 chrX 174635903 174635994 -2338146 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 2756 163 36 0 chrX 174636676 174637179 -2336961 + L1MB3 LINE L1 5653 6173 -10 194 0 0 37 chrX 174638935 174638962 -2335178 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chrX 174639659 174639692 -2334448 + AT_rich Low_complexity Low_complexity 1 33 0 3690 135 30 3 chrX 174639827 174640463 -2333677 + MER39B LTR ERV1 1 653 0 3731 106 12 9 chrX 174640499 174641063 -2333077 - L1PA16 LINE L1 -9 6157 5592 1111 171 199 20 chrX 174641655 174641901 -2332239 + AluJo SINE Alu 1 290 -12 348 164 0 0 chrX 174641901 174641968 -2332172 + G-rich Low_complexity Low_complexity 1 67 0 331 111 93 52 chrX 174642004 174642176 -2331964 + GA-rich Low_complexity Low_complexity 2 180 0 441 305 0 0 chrX 174642299 174642427 -2331713 - MER77 LTR ERV1 0 605 478 898 176 64 5 chrX 174642432 174642636 -2331504 - L1M2 LINE L1 -725 5587 5372 250 138 62 75 chrX 174642638 174642675 -2331465 + L1MA9 LINE L1 6234 6270 -42 1677 159 0 15 chrX 174642675 174642939 -2331201 + AluJb SINE Alu 35 294 -18 250 138 62 75 chrX 174642939 174642981 -2331159 + L1MA9 LINE L1 6270 6312 0 1274 261 55 60 chrX 174643060 174643547 -2330593 - MER77 LTR ERV1 -119 486 2 185 35 69 0 chrX 174644664 174644693 -2329447 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 2347 108 19 35 chrX 174644739 174645109 -2329031 - THE1B LTR MaLR 0 364 1 1893 169 0 10 chrX 174645205 174645519 -2328621 + AluJb SINE Alu 1 311 -1 875 219 86 60 chrX 174645687 174646091 -2328049 - MLT1C LTR MaLR -6 618 45 278 266 32 13 chrX 174646991 174647149 -2326991 + (TATAA)n Simple_repeat Simple_repeat 2 162 0 215 224 19 28 chrX 174647105 174647212 -2326928 + (TTA)n Simple_repeat Simple_repeat 3 108 0 * 205 121 61 38 chrX 174647212 174647344 -2326796 + (TATAA)n Simple_repeat Simple_repeat 5 139 0 239 186 23 85 chrX 174647391 174647520 -2326620 + (TATAA)n Simple_repeat Simple_repeat 2 122 0 22 35 0 0 chrX 174647737 174647766 -2326374 + AT_rich Low_complexity Low_complexity 1 29 0 2159 109 46 57 chrX 174649615 174649983 -2324157 + THE1B LTR MaLR 1 364 0 288 53 0 0 chrX 174649990 174650028 -2324112 + (CAA)n Simple_repeat Simple_repeat 2 39 0 5059 130 14 1 chrX 174650032 174650862 -2323278 + L1PB4 LINE L1 5314 6154 -2 272 301 194 25 chrX 174651582 174651778 -2322362 - MIR SINE MIR -22 240 12 236 212 15 0 chrX 174652901 174652967 -2321173 + (CATATA)n Simple_repeat Simple_repeat 4 70 0 2250 169 43 0 chrX 174653176 174653590 -2320550 - MSTB1 LTR MaLR 0 432 1 1049 137 6 17 chrX 174653654 174653829 -2320311 + MSTB1 LTR MaLR 259 431 -1 595 248 63 76 chrX 174654034 174654401 -2319739 + L1ME3 LINE L1 5793 6154 -8 326 320 72 11 chrX 174654564 174654745 -2319395 + L1M4 LINE L1 3239 3430 -2716 314 144 56 11 chrX 174656048 174656138 -2318002 + GA-rich Low_complexity Low_complexity 1 94 0 1501 349 74 18 chrX 174656964 174657408 -2316732 + MLT2B2 LTR ERVL 1 469 -46 378 175 32 7 chrX 174657411 174657565 -2316575 + (TCTA)n Simple_repeat Simple_repeat 3 160 0 257 59 0 0 chrX 174657576 174657610 -2316530 + MLT2D LTR ERVL 379 412 -2 491 232 64 8 chrX 174658394 174658519 -2315621 + MER20 DNA MER1_type 1 132 -87 1553 71 0 0 chrX 174658601 174658797 -2315343 + MER107 DNA MER1_type 1 196 -1 2168 122 3 3 chrX 174659148 174659460 -2314680 - AluSx SINE Alu 0 312 1 618 313 85 25 chrX 174660175 174660574 -2313566 - ERVL LTR ERVL -896 4868 4446 1569 236 115 62 chrX 174661141 174661734 -2312406 + MLT1E3 LTR MaLR 1 624 0 1828 174 124 16 chrX 174662773 174663159 -2310981 - MSTA LTR MaLR 0 428 1 1231 173 35 143 chrX 174664130 174664535 -2309605 - MLT1A1 LTR MaLR -1 364 4 370 283 28 0 chrX 174664938 174665044 -2309096 - MER81 DNA DNA -1 113 5 264 325 82 49 chrX 174665099 174665342 -2308798 - L2 LINE L2 -659 2655 2405 8211 232 12 5 chrX 174665894 174667555 -2306585 - HERVE LTR ERV1 -5328 2485 814 11339 22 0 0 chrX 174667555 174669569 -2304571 + L1PA2 LINE L1 4142 6155 0 2782 78 0 0 chrX 174669569 174669926 -2304214 - HERVE LTR ERV1 -6539 357 1 1580 183 25 28 chrX 174669926 174670368 -2303772 - LTR2B LTR ERV1 0 490 1 * 2935 141 45 8 chrX 174670368 174670849 -2303291 - LTR1B LTR ERV1 -327 499 1 768 165 181 6 chrX 174670850 174671032 -2303108 - MER21A LTR ERV1 -712 219 6 371 127 0 56 chrX 174671046 174671117 -2303023 + L1MB1 LINE L1 6097 6163 -26 5581 113 21 7 chrX 174671120 174671888 -2302252 - MER4E LTR ERV1 0 779 1 269 206 0 16 chrX 174671919 174671982 -2302158 + L1MA10 LINE L1 6163 6224 -110 4113 103 10 5 chrX 174671984 174672567 -2301573 + LTR43 LTR ERV1 9 594 -8 618 105 42 0 chrX 174672582 174672677 -2301463 + L1MA10 LINE L1 6236 6334 0 814 216 30 142 chrX 174674540 174674713 -2299427 + MLT1E3 LTR MaLR 2 193 -461 3032 108 2 5 chrX 174674713 174675130 -2299010 - L1PA13 LINE L1 -2 6161 5746 814 216 30 142 chrX 174675130 174675448 -2298692 + MLT1E3 LTR MaLR 193 424 -230 250 186 0 0 chrX 174675453 174675496 -2298644 - MLT1E LTR MaLR -272 321 279 1911 152 0 33 chrX 174675589 174675892 -2298248 + AluJb SINE Alu 1 293 -19 3016 98 12 0 chrX 174676448 174676856 -2297284 + L1PA13 LINE L1 5732 6144 -19 1745 167 0 4 chrX 174677256 174677537 -2296603 - AluJo SINE Alu -32 280 1 660 102 0 0 chrX 174678066 174678164 -2295976 + (CA)n Simple_repeat Simple_repeat 2 99 0 803 59 0 2 chrX 174678230 174678486 -2295654 + AluY SINE Alu 1 301 -10 309 316 28 12 chrX 174678498 174678641 -2295499 + MIR SINE MIR 12 103 -105 1626 161 14 27 chrX 174678645 174678937 -2295203 + AluJb SINE Alu 1 288 -24 1820 128 29 4 chrX 174679800 174680073 -2294067 - L1PA16 LINE L1 -5 6161 5882 807 296 117 49 chrX 174680073 174681044 -2293096 - L1M4 LINE L1 -2958 3188 2152 303 28 0 0 chrX 174681044 174681080 -2293060 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2292 106 3 0 chrX 174681265 174681567 -2292573 - AluSx SINE Alu -9 303 1 1512 145 9 112 chrX 174682233 174682564 -2291576 - AluJb SINE Alu -14 298 2 276 0 29 0 chrX 174682911 174682945 -2291195 - MADE1 DNA Mariner -45 35 1 1426 242 97 30 chrX 174683942 174684437 -2289703 + MLT1H LTR MaLR 1 528 -21 29 0 0 0 chrX 174684921 174684950 -2289190 + AT_rich Low_complexity Low_complexity 1 29 0 2081 138 0 0 chrX 174684992 174685288 -2288852 - AluSx SINE Alu -3 309 14 1888 155 0 29 chrX 174686038 174686348 -2287792 + AluJo SINE Alu 1 301 -11 2401 43 4 0 chrX 174686397 174686696 -2287444 - AluY SINE Alu 0 300 1 1643 162 49 0 chrX 174687075 174687194 -2286946 + AluJo SINE Alu 1 113 -199 321 26 0 0 chrX 174687194 174687232 -2286908 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 1643 162 49 0 chrX 174687232 174687396 -2286744 + AluJo SINE Alu 113 298 -14 1708 162 7 34 chrX 174688300 174688597 -2285543 - AluJo SINE Alu -23 289 1 1781 182 0 10 chrX 174688987 174689300 -2284840 - AluJo SINE Alu 0 312 3 2063 143 10 0 chrX 174689920 174690227 -2283913 + AluSx SINE Alu 1 310 -2 2092 177 32 0 chrX 174690260 174690632 -2283508 + L1PB4 LINE L1 5766 6149 -7 753 280 85 33 chrX 174690731 174691305 -2282835 + L1ME3A LINE L1 5331 5957 -213 21 0 0 0 chrX 174691416 174691437 -2282703 + AT_rich Low_complexity Low_complexity 1 21 0 234 207 0 0 chrX 174691509 174691567 -2282573 + GA-rich Low_complexity Low_complexity 1 58 0 236 262 98 0 chrX 174691850 174691911 -2282229 + L2 LINE L2 3230 3296 -17 761 102 0 8 chrX 174693642 174693760 -2280380 + (GAAA)n Simple_repeat Simple_repeat 1 117 0 2118 252 98 18 chrX 174693760 174693910 -2280230 + L1MB5 LINE L1 4169 4306 -1840 2428 74 0 3 chrX 174693910 174694209 -2279931 + AluY SINE Alu 1 298 -13 2118 252 98 18 chrX 174694209 174694916 -2279224 + L1MB5 LINE L1 4306 5095 -1051 1446 120 0 74 chrX 174694916 174695158 -2278982 + AluSx SINE Alu 1 224 -88 294 29 0 0 chrX 174695158 174695193 -2278947 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 602 252 92 42 chrX 174695198 174695701 -2278439 + L1MB5 LINE L1 5092 5609 -555 2241 103 6 0 chrX 174696365 174696676 -2277464 + AluSq SINE Alu 1 313 0 26 0 0 0 chrX 174696712 174696738 -2277402 + AT_rich Low_complexity Low_complexity 1 26 0 558 198 21 80 chrX 174696742 174696921 -2277219 + L1MB5 LINE L1 6014 6183 -1 296 320 6 16 chrX 174697582 174697832 -2276308 + (CA)n Simple_repeat Simple_repeat 1 247 0 401 257 0 38 chrX 174697854 174698037 -2276103 + (CA)n Simple_repeat Simple_repeat 2 177 0 426 302 0 12 chrX 174698248 174698417 -2275723 + (CA)n Simple_repeat Simple_repeat 1 167 0 1375 235 62 75 chrX 174698911 174699349 -2274791 - MER67D LTR ERV1 -8 506 75 1446 152 14 48 chrX 174699351 174699551 -2274589 + L1MA4 LINE L1 5847 6035 -265 1621 162 4 11 chrX 174699551 174699817 -2274323 - AluJo SINE Alu -1 311 48 1446 152 14 48 chrX 174699817 174699905 -2274235 + L1MA4 LINE L1 6035 6125 -175 1747 145 8 0 chrX 174699913 174700175 -2273965 - AluJb SINE Alu -1 311 48 4386 33 17 0 chrX 174700175 174700655 -2273485 - LTR2B LTR ERV1 -2 488 1 413 58 0 0 chrX 174700656 174700708 -2273432 - AluJb SINE Alu -258 52 1 2022 118 13 54 chrX 174701462 174701777 -2272363 - AluSx SINE Alu -10 302 1 2022 141 3 3 chrX 174702011 174702315 -2271825 + AluSx SINE Alu 1 304 -8 560 101 60 18 chrX 174702631 174702799 -2271341 + (TCTA)n Simple_repeat Simple_repeat 3 177 0 275 218 10 0 chrX 174702838 174702939 -2271201 + (TCTA)n Simple_repeat Simple_repeat 4 105 0 185 274 27 27 chrX 174703153 174703226 -2270914 + L3 LINE CR1 1504 1576 -1 3485 167 45 20 chrX 174703906 174704552 -2269588 + L1PB4 LINE L1 5482 6143 -13 1643 167 11 28 chrX 174705098 174705385 -2268755 + AluJo SINE Alu 7 288 -24 242 114 0 23 chrX 174705388 174705432 -2268708 + (GGA)n Simple_repeat Simple_repeat 1 43 0 1224 253 63 38 chrX 174705705 174706132 -2268008 - MLT1C LTR MaLR -9 458 21 1854 157 0 40 chrX 174706229 174706553 -2267587 + AluJo SINE Alu 1 311 -1 281 240 82 96 chrX 174707341 174707399 -2266741 - MLT1J2 LTR MaLR -2 448 391 2658 55 0 3 chrX 174707399 174707711 -2266429 - AluY SINE Alu 0 311 1 281 240 82 96 chrX 174707711 174707860 -2266280 - MLT1J2 LTR MaLR -59 391 244 1423 140 18 0 chrX 174707910 174708131 -2266009 - MLT1B LTR MaLR -8 382 158 490 176 0 22 chrX 174708131 174708222 -2265918 - MLT1A2 LTR MaLR 0 374 286 562 133 67 14 chrX 174708242 174708527 -2265613 + (TCTA)n Simple_repeat Simple_repeat 1 300 0 4260 177 17 4 chrX 174708528 174709252 -2264888 - L1MB3 LINE L1 -8 6175 5443 1964 140 33 7 chrX 174709466 174709766 -2264374 - AluSx SINE Alu -4 308 1 1391 75 0 65 chrX 174709775 174709919 -2264221 + L1MA1 LINE L1 6116 6245 -57 2000 155 0 0 chrX 174709919 174710215 -2263925 + AluSx SINE Alu 1 296 -16 1391 75 0 65 chrX 174710215 174710270 -2263870 + L1MA1 LINE L1 6245 6302 0 24 0 0 0 chrX 174710270 174710294 -2263846 + AT_rich Low_complexity Low_complexity 1 24 0 435 268 14 49 chrX 174710990 174711132 -2263008 - MLT1C LTR MaLR -1 466 330 1494 142 0 0 chrX 174711132 174711383 -2262757 + AluSg/x SINE Alu 86 336 0 494 209 18 0 chrX 174711570 174711680 -2262460 + MER53 DNA DNA 17 128 -61 1913 144 10 3 chrX 174711689 174711988 -2262152 + AluJb SINE Alu 1 301 -11 31 82 0 0 chrX 174711992 174712065 -2262075 + AT_rich Low_complexity Low_complexity 1 73 0 191 333 56 0 chrX 174712494 174712548 -2261592 + L3 LINE CR1 132 188 -1389 266 270 10 0 chrX 174712655 174712755 -2261385 - HAL1 LINE L1 -124 2383 2283 409 230 17 126 chrX 174712775 174712817 -2261323 + MER87 LTR ERV1 1 46 -495 2161 117 10 7 chrX 174712817 174713125 -2261015 + AluSq SINE Alu 1 309 -4 409 230 17 126 chrX 174713125 174713256 -2260884 + MER87 LTR ERV1 46 149 -392 1723 146 0 8 chrX 174713272 174713562 -2260578 + AluJb SINE Alu 30 317 0 183 42 0 0 chrX 174713588 174713612 -2260528 + (GA)n Simple_repeat Simple_repeat 2 25 0 940 245 89 65 chrX 174713736 174714225 -2259915 + LTR8A LTR ERV1 116 727 0 578 265 108 76 chrX 174714237 174714427 -2259713 - HAL1 LINE L1 -273 2234 2051 956 149 37 50 chrX 174714427 174714588 -2259552 - FRAM SINE Alu -7 159 1 578 265 108 76 chrX 174714588 174714936 -2259204 - HAL1 LINE L1 -456 2051 1679 2601 107 9 80 chrX 174714936 174715386 -2258754 - MER4E LTR ERV1 0 766 349 397 284 125 91 chrX 174715551 174715878 -2258262 + L1M2 LINE L1 419 733 -6116 21 0 0 0 chrX 174715878 174715899 -2258241 + GC_rich Low_complexity Low_complexity 1 21 0 397 284 125 91 chrX 174715899 174716048 -2258092 + L1M2 LINE L1 733 875 -5974 22 0 0 0 chrX 174716048 174716070 -2258070 + GC_rich Low_complexity Low_complexity 1 22 0 397 284 125 91 chrX 174716070 174716363 -2257777 + L1M2 LINE L1 875 1218 -5631 303 122 0 0 chrX 174717346 174717395 -2256745 + (TC)n Simple_repeat Simple_repeat 2 50 0 2471 91 8 36 chrX 174717416 174717481 -2256659 - THE1A LTR MaLR 0 355 290 2120 104 0 3 chrX 174717481 174717778 -2256362 - AluSx SINE Alu -16 296 1 2471 91 8 36 chrX 174717778 174718075 -2256065 - THE1A LTR MaLR -65 290 3 10832 101 43 2 chrX 174718077 174719595 -2254545 - THE1A-int LTR MaLR 0 1580 1 2392 120 11 0 chrX 174719595 174719946 -2254194 - THE1A LTR MaLR 0 355 1 245 186 0 0 chrX 174720134 174720177 -2253963 - Alu SINE Alu -89 44 2 405 151 0 0 chrX 174720701 174720774 -2253366 + tRNA-Ile-ATT tRNA tRNA 1 73 -4 527 107 0 0 chrX 174721115 174721190 -2252950 + tRNA-Ile-ATT tRNA tRNA 1 75 -2 211 310 80 10 chrX 174721631 174721731 -2252409 - L2 LINE L2 -4 3309 3203 1746 146 0 53 chrX 174722498 174722819 -2251321 + AluJb SINE Alu 1 304 -8 183 194 0 0 chrX 174723065 174723096 -2251044 + L2 LINE L2 3231 3261 -11 282 283 43 58 chrX 174723484 174723622 -2250518 + MER5A DNA MER1_type 49 184 -5 243 146 21 0 chrX 174723714 174723762 -2250378 - L2 LINE L2 -205 3067 3019 207 167 0 0 chrX 174724741 174724777 -2249363 + (TCTCTG)n Simple_repeat Simple_repeat 1 36 0 202 155 87 41 chrX 174725091 174725140 -2249000 + MIR SINE MIR 68 119 -89 191 288 0 15 chrX 174725179 174725245 -2248895 - L2 LINE L2 -13 3259 3195 242 339 37 18 chrX 174725700 174725809 -2248331 - L2 LINE L2 -208 3064 2954 182 299 93 10 chrX 174726173 174726270 -2247870 - MER5A DNA MER1_type -11 178 74 1050 173 31 126 chrX 174726517 174726695 -2247445 - AluJo SINE Alu -8 304 168 1687 146 7 0 chrX 174726695 174726969 -2247171 + AluSx SINE Alu 1 276 -36 1050 173 31 126 chrX 174726969 174727108 -2247032 - AluJo SINE Alu -144 168 17 616 196 227 6 chrX 174727440 174727603 -2246537 + MER20 DNA MER1_type 2 200 -19 283 211 0 211 chrX 174727668 174727801 -2246339 + L2 LINE L2 3202 3306 -7 345 266 49 28 chrX 174727830 174727973 -2246167 - L1MC/D LINE L1 -2080 5728 5583 2121 124 0 3 chrX 174728005 174728312 -2245828 + AluSx SINE Alu 1 306 -6 233 272 178 47 chrX 174728323 174728621 -2245519 + L1ME3A LINE L1 5632 5968 -202 378 211 12 170 chrX 174728893 174728956 -2245184 - MER112 DNA MER1_type -45 215 144 2156 103 7 0 chrX 174728956 174729258 -2244882 + AluSx SINE Alu 7 310 -2 378 211 12 170 chrX 174729258 174729402 -2244738 - MER112 DNA MER1_type -116 144 -21 1883 102 41 10 chrX 174729402 174729697 -2244443 - AluSx SINE Alu -8 304 1 2203 94 0 0 chrX 174729698 174729995 -2244145 - AluSx SINE Alu -15 297 1 378 211 12 170 chrX 174729995 174730031 -2244109 - MER112 DNA MER1_type -212 48 8 1606 145 100 35 chrX 174731081 174731309 -2242831 - MSTA LTR MaLR -1 427 172 2386 63 3 0 chrX 174731309 174731612 -2242528 - AluY SINE Alu -6 305 2 1606 145 100 35 chrX 174731612 174731693 -2242447 - MSTA LTR MaLR -256 172 98 2698 161 30 79 chrX 174732139 174732747 -2241393 - L1MB3 LINE L1 -4 6179 5602 1839 174 28 75 chrX 174732724 174732817 -2241323 - L1MB3 LINE L1 -1755 4391 4295 * 1858 125 49 7 chrX 174732817 174733105 -2241035 - AluSx SINE Alu -12 300 1 1839 174 28 75 chrX 174733105 174733153 -2240987 - L1MB3 LINE L1 -1851 4295 4246 1745 113 0 96 chrX 174733153 174733488 -2240652 - AluSx SINE Alu -9 303 1 1839 174 28 75 chrX 174733488 174733880 -2240260 - L1MB3 LINE L1 -1900 4246 3882 1676 155 50 4 chrX 174734535 174734813 -2239327 + AluSx SINE Alu 1 291 -21 2114 90 0 20 chrX 174734919 174735219 -2238921 + AluY SINE Alu 1 294 -17 806 261 0 0 chrX 174735337 174735502 -2238638 - AluJb SINE Alu -11 301 137 2046 104 3 14 chrX 174735635 174735932 -2238208 - AluSx SINE Alu -18 294 1 358 317 6 19 chrX 174736100 174736425 -2237715 + (CA)n Simple_repeat Simple_repeat 1 320 0 367 296 0 28 chrX 174736677 174736853 -2237287 + (CA)n Simple_repeat Simple_repeat 1 171 0 1385 233 60 76 chrX 174737326 174737773 -2236367 - MER67D LTR ERV1 0 514 75 1211 134 16 0 chrX 174737775 174737969 -2236171 + L1MA4 LINE L1 5847 6043 -257 833 152 8 0 chrX 174737975 174738107 -2236033 - FRAM SINE Alu -1 175 43 23161 194 2 12 chrX 174738207 174742257 -2231883 + HERVE LTR ERV1 3806 7812 -1 327 209 78 72 chrX 174742257 174742410 -2231730 + LTR2 LTR ERV1 1 154 -295 50 42 0 0 chrX 174742564 174742635 -2231505 + AT_rich Low_complexity Low_complexity 1 71 0 1434 137 22 0 chrX 174743580 174743807 -2230333 - L1PA13 LINE L1 -1 6162 5931 1152 124 1 0 chrX 174743808 174743990 -2230150 - L1M2 LINE L1 -342 5819 5636 3012 251 71 14 chrX 174744089 174744995 -2229145 + L1MC4a LINE L1 6850 7806 -2 23 0 0 0 chrX 174744995 174745018 -2229122 + AT_rich Low_complexity Low_complexity 1 23 0 5648 132 17 7 chrX 174745289 174746244 -2227896 + L1PA16 LINE L1 5203 6166 0 1417 171 66 21 chrX 174746866 174747153 -2226987 + AluJo SINE Alu 4 303 -9 232 275 25 0 chrX 174747854 174747934 -2226206 - LTR67 LTR ERVL 0 557 476 805 207 101 48 chrX 174747939 174748147 -2225993 - MER20 DNA MER1_type 0 219 1 384 40 0 0 chrX 174748503 174748553 -2225587 + (TG)n Simple_repeat Simple_repeat 2 51 0 780 318 93 34 chrX 174748736 174749273 -2224867 - HERV16 LTR ERVL -2377 3277 2709 682 320 80 20 chrX 174749572 174749962 -2224178 - HERV16 LTR ERVL -4223 773 361 703 301 50 0 chrX 174750266 174750485 -2223655 - HERV16 LTR ERVL -3814 1182 953 1948 109 62 22 chrX 174750635 174750956 -2223184 + L1P5 LINE L1 5330 5663 -493 1759 181 12 21 chrX 174751056 174751388 -2222752 + LTR2B LTR ERV1 162 490 0 917 125 112 78 chrX 174751388 174751652 -2222488 + LTR1B LTR ERV1 496 784 -1 691 227 8 0 chrX 174751693 174751825 -2222315 + MER21B LTR ERV1 279 411 -452 2992 136 54 24 chrX 174751831 174752415 -2221725 - MER4B LTR ERV1 -6 773 5 2619 143 14 21 chrX 174752421 174752841 -2221299 + MER21A LTR ERV1 506 922 -9 929 193 53 0 chrX 174752851 174753038 -2221102 + L1MB1 LINE L1 5917 6113 -76 1085 35 35 17 chrX 174754011 174754183 -2219957 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1601 160 0 7 chrX 174754184 174754459 -2219681 - AluJo SINE Alu -38 274 2 2149 106 0 0 chrX 174754633 174754935 -2219205 - AluY SINE Alu -9 302 1 2484 134 7 36 chrX 174754955 174755373 -2218767 - Tigger2a DNA MER2_type -4 430 25 210 143 0 0 chrX 174755768 174755803 -2218337 + (T)n Simple_repeat Simple_repeat 1 35 0 1759 181 0 6 chrX 174755820 174756134 -2218006 + AluJb SINE Alu 1 312 0 980 113 0 0 chrX 174756708 174756841 -2217299 - AluSq/x SINE Alu -180 133 1 11452 117 26 43 chrX 174756909 174757366 -2216774 + L1P3 LINE L1 10 473 -5978 198 71 0 0 chrX 174757366 174757394 -2216746 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 11452 117 26 43 chrX 174757394 174758763 -2215377 + L1P3 LINE L1 473 1785 -4666 291 185 33 0 chrX 174758765 174758857 -2215283 + GA-rich Low_complexity Low_complexity 2 96 0 2100 102 0 3 chrX 174759819 174760104 -2214036 + AluSx SINE Alu 1 284 -28 518 179 18 30 chrX 174760238 174760362 -2213778 + MLT1C LTR MaLR 1 108 -359 1383 157 35 4 chrX 174760362 174760592 -2213548 - AluJo SINE Alu -75 237 1 29 47 0 0 chrX 174760766 174760809 -2213331 + AT_rich Low_complexity Low_complexity 1 43 0 740 152 9 0 chrX 174760942 174761054 -2213086 - FLAM_C SINE Alu -19 124 12 189 0 0 0 chrX 174761610 174761631 -2212509 + (GGAA)n Simple_repeat Simple_repeat 4 24 0 1548 175 3 27 chrX 174761757 174762054 -2212086 + AluJo SINE Alu 1 290 -22 1190 230 36 48 chrX 174762333 174762689 -2211451 - L1MD2 LINE L1 0 6359 6008 1824 163 3 0 chrX 174762891 174763186 -2210954 - AluJo SINE Alu -16 296 1 1587 191 75 9 chrX 174763442 174763761 -2210379 + MER2 DNA MER2_type 4 343 -1 5169 60 0 5 chrX 174763998 174764636 -2209504 - L1PA8 LINE L1 -12 6160 5526 237 143 42 34 chrX 174765329 174765448 -2208692 + C-rich Low_complexity Low_complexity 4 123 0 190 311 0 0 chrX 174966338 174966383 -2007757 + MIR SINE MIR 218 262 0 464 242 48 32 chrX 174966962 174967086 -2007054 + L1MC1 LINE L1 6202 6327 -6 205 256 86 51 chrX 174967821 174967938 -2006202 + MIR3 SINE MIR 77 197 -11 663 68 11 0 chrX 174968089 174968177 -2005963 + L1PA7 LINE L1 8 96 -6365 * 11292 98 7 8 chrX 174968175 174973387 -2000753 + L1PA7 LINE L1 1162 6467 -2 731 247 44 6 chrX 174973760 174973942 -2000198 - MER5A DNA MER1_type 0 189 1 371 292 44 0 chrX 174974019 174974156 -1999984 + L1MC4a LINE L1 5707 5849 -1959 1848 168 9 52 chrX 174974189 174974612 -1999528 + L1MB8 LINE L1 5773 6177 -1 302 291 47 68 chrX 174975324 174975472 -1998668 + MIR3 SINE MIR 17 161 -47 3702 183 53 25 chrX 174976304 174976514 -1997626 - L1MB7 LINE L1 0 6184 5981 2068 133 144 5 chrX 174976514 174976890 -1997250 + MSTA LTR MaLR 1 428 0 3702 183 53 25 chrX 174976890 174977495 -1996645 - L1MB7 LINE L1 -203 5981 5346 367 145 0 0 chrX 174977564 174977626 -1996514 - L1MB7 LINE L1 -810 5336 5275 190 136 45 0 chrX 174977626 174977670 -1996470 + (TA)n Simple_repeat Simple_repeat 2 47 0 291 237 0 0 chrX 174977680 174977739 -1996401 - L1MB7 LINE L1 -874 5272 5214 193 407 33 0 chrX 174977886 174977977 -1996163 + L2 LINE L2 2884 2977 -336 2266 142 8 3 chrX 174978041 174978408 -1995732 - L1PA16 LINE L1 -14 6152 5784 183 298 70 0 chrX 174978422 174978479 -1995661 + L2 LINE L2 3023 3083 -189 2621 186 21 4 chrX 174978643 174979165 -1994975 - L1MA6 LINE L1 -968 5178 4648 * 5866 128 20 42 chrX 174979159 174980297 -1993843 + L1MA6 LINE L1 5193 6300 0 182 220 120 0 chrX 174980312 174980362 -1993778 + MIR SINE MIR 190 245 -17 530 251 0 55 chrX 174980424 174980587 -1993553 - MIR SINE MIR -50 212 59 5589 233 65 47 chrX 174981808 174981972 -1992168 - L1 LINE L1 -1777 4369 4210 855 128 0 0 chrX 174981972 174982136 -1992004 + (TTCC)n Simple_repeat Simple_repeat 3 166 0 5589 233 65 47 chrX 174982136 174982363 -1991777 - L1 LINE L1 -1936 4210 3989 1696 148 10 74 chrX 174982363 174982673 -1991467 - AluJo SINE Alu -21 291 2 5589 233 65 47 chrX 174982673 174984341 -1989799 - L1 LINE L1 -2157 3989 2270 1332 249 44 62 chrX 174984336 174984775 -1989365 - L1ME1 LINE L1 -4 6162 5728 * 198 118 0 0 chrX 174985047 174985081 -1989059 + (CGGGG)n Simple_repeat Simple_repeat 4 37 0 2422 56 16 0 chrX 174985134 174985440 -1988700 + AluY SINE Alu 1 311 0 1113 282 118 37 chrX 174985656 174986230 -1987910 - L1MEc LINE L1 -5716 680 60 565 179 43 17 chrX 174986350 174986467 -1987673 + AluJb SINE Alu 4 123 -189 298 348 92 18 chrX 174986909 174987073 -1987067 - L3 LINE CR1 -374 1203 1028 596 310 54 29 chrX 174989049 174989546 -1984594 + HAL1b LINE L1 1196 1316 -32 557 40 0 0 chrX 174990075 174990149 -1983991 + AluY SINE Alu 226 299 -10 234 190 0 17 chrX 174990937 174990995 -1983145 - L1MA8 LINE L1 -5 6286 6230 * 333 85 0 0 chrX 174990992 174991039 -1983101 - L1MA2 LINE L1 -81 6223 6177 2277 104 0 0 chrX 174993010 174993308 -1980832 + AluSp SINE Alu 1 298 -15 2324 93 3 0 chrX 174996145 174996457 -1977683 - AluSp SINE Alu 0 313 1 779 61 0 0 chrX 174997988 174998086 -1976054 + HY3 scRNA scRNA 1 98 -3 24 32 0 0 chrX 174998349 174998380 -1975760 + AT_rich Low_complexity Low_complexity 1 31 0 2246 89 10 0 chrX 174998468 174998770 -1975370 - AluSc SINE Alu -4 305 1 318 83 0 0 chrX 174999534 174999582 -1974558 + L1MA3 LINE L1 6258 6305 0 3136 55 5 2 chrX 175000530 175000927 -1973213 + L1PA7 LINE L1 5751 6148 -6 1470 49 0 0 chrX 175003891 175004110 -1970030 + L1PA7 LINE L1 5956 6174 0 327 182 95 0 chrX 175004138 175004216 -1969924 + AluSp SINE Alu 136 205 -98 441 0 0 0 chrX 175004218 175004267 -1969873 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 1784 100 7 7 chrX 175006397 175006668 -1967472 + L1MA2 LINE L1 6034 6304 0 270 0 0 0 chrX 175006798 175006828 -1967312 + (TG)n Simple_repeat Simple_repeat 1 30 0 1346 224 42 15 chrX 175007493 175007824 -1966316 - MER58B DNA MER1_type -1 340 1 22 0 0 0 chrX 175008029 175008051 -1966089 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chrX 175008335 175008357 -1965783 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chrX 175008684 175008716 -1965424 + (GA)n Simple_repeat Simple_repeat 1 32 0 359 21 21 0 chrX 175009128 175009176 -1964964 + (TC)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chrX 175009175 175009198 -1964942 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 1797 101 0 0 chrX 175010598 175010825 -1963315 + AluSg/x SINE Alu 70 296 -16 22 0 0 0 chrX 175014132 175014154 -1959986 + AT_rich Low_complexity Low_complexity 1 22 0 2452 96 58 6 chrX 175015280 175015624 -1958516 + THE1B LTR MaLR 3 364 0 772 240 141 59 chrX 175015694 175015998 -1958142 - MLT1J2 LTR MaLR -121 329 1 1692 167 90 0 chrX 175017521 175017832 -1956308 - MER58B DNA MER1_type 0 341 3 368 298 89 0 chrX 175017864 175017988 -1956152 - L2 LINE L2 0 3272 3138 236 179 134 0 chrX 175018371 175018438 -1955702 - MLT1L LTR MaLR -11 604 529 990 245 9 0 chrX 175018913 175019129 -1955011 + Charlie1 DNA MER1_type 7 224 -2537 629 181 0 7 chrX 175019130 175019268 -1954872 + Charlie1 DNA MER1_type 2625 2761 0 320 200 12 0 chrX 175019397 175019482 -1954658 + (TA)n Simple_repeat Simple_repeat 1 86 0 266 269 124 21 chrX 175021964 175022206 -1951934 - L1MC5 LINE L1 -32 7929 7663 357 269 126 39 chrX 175022627 175022913 -1951227 - MLT1J1 LTR MaLR 0 446 136 2021 132 48 6 chrX 175023264 175023598 -1950542 - MER7A DNA MER2_type 0 346 1 546 259 93 31 chrX 175024083 175024276 -1949864 + MER63A DNA MER1_type 1 205 -5 1939 132 16 3 chrX 175026036 175026347 -1947793 + L1PB4 LINE L1 5818 6132 -24 15113 159 14 10 chrX 175027574 175030787 -1943353 - L1MA2 LINE L1 0 7723 4486 2015 136 0 7 chrX 175030787 175031106 -1943034 - AluSx SINE Alu 0 317 1 15113 159 14 10 chrX 175031106 175032309 -1941831 - L1MA2 LINE L1 -3237 4486 3289 40780 34 22 1 chrX 175032310 175038337 -1935803 + L1PA2 LINE L1 1 6155 0 17374 156 30 18 chrX 175038341 175038681 -1935459 - L1MA2 LINE L1 -4264 3301 2966 2364 102 52 17 chrX 175038681 175039043 -1935097 + THE1C LTR MaLR 1 375 0 17374 156 30 18 chrX 175039043 175040990 -1933150 - L1MA2 LINE L1 -4599 2966 962 1767 128 102 37 chrX 175040990 175041342 -1932798 - THE1C LTR MaLR 0 375 1 17374 156 30 18 chrX 175041342 175042295 -1931845 - L1MA2 LINE L1 -6603 962 22 193 272 185 12 chrX 175042918 175042999 -1931141 + MIR3 SINE MIR 91 185 -23 295 288 50 19 chrX 175043018 175043178 -1930962 + MER112 DNA MER1_type 96 260 0 275 276 46 0 chrX 175043444 175043531 -1930609 + MIR SINE MIR 102 192 -70 359 284 55 24 chrX 175043814 175043941 -1930199 + MIR SINE MIR 71 201 -61 334 254 0 85 chrX 175044324 175044442 -1929698 - MIR SINE MIR -78 184 77 1449 213 41 6 chrX 175045048 175045410 -1928730 + L1MD3 LINE L1 7611 7985 -10 187 333 46 23 chrX 175045653 175045740 -1928400 + MIR3 SINE MIR 108 196 -12 1798 193 178 26 chrX 175047174 175047727 -1926413 + MLT1E2 LTR MaLR 1 626 0 436 106 45 0 chrX 175047725 175047791 -1926349 - Tigger5 DNA MER2_type 0 2323 2255 * 381 244 0 0 chrX 175047836 175047914 -1926226 - Tigger5 DNA MER2_type -2245 78 1 877 299 72 36 chrX 175047930 175048036 -1926104 + L3 LINE CR1 1187 1288 -289 752 219 5 71 chrX 175048036 175048260 -1925880 + MER3 DNA MER1_type 1 209 0 877 299 72 36 chrX 175048260 175048288 -1925852 + L3 LINE CR1 1288 1314 -263 2308 90 30 0 chrX 175048288 175048589 -1925551 + AluY SINE Alu 1 310 -1 877 299 72 36 chrX 175048589 175048814 -1925326 + L3 LINE CR1 1314 1560 -17 320 180 146 11 chrX 175049027 175049116 -1925024 - L1MB5 LINE L1 -9 6165 6065 539 306 98 17 chrX 175049323 175049558 -1924582 + MIR SINE MIR 8 261 -1 533 323 19 6 chrX 175050639 175050797 -1923343 + MIR3 SINE MIR 22 181 -27 421 296 24 72 chrX 175051005 175051090 -1923050 - MIR SINE MIR -24 238 150 2576 110 13 8 chrX 175051090 175051463 -1922677 - THE1C LTR MaLR 0 375 1 421 296 24 72 chrX 175051463 175051615 -1922525 - MIR SINE MIR -112 150 15 21 0 0 0 chrX 175051625 175051646 -1922494 + AT_rich Low_complexity Low_complexity 1 21 0 415 333 54 0 chrX 175051687 175051834 -1922306 - MIR3 SINE MIR -51 157 3 1033 268 73 39 chrX 175052066 175052421 -1921719 + L2 LINE L2 2946 3312 -1 271 331 85 23 chrX 175052719 175052849 -1921291 - MIR3 SINE MIR -1 207 70 377 245 29 39 chrX 175052916 175053018 -1921122 - MER5B DNA MER1_type -15 163 63 756 312 46 4 chrX 175053038 175053275 -1920865 + MIR SINE MIR 16 262 0 20228 160 61 16 chrX 175053635 175054873 -1919267 - L1 LINE L1 -3112 4453 3272 1909 170 0 6 chrX 175054873 175055184 -1918956 - AluJb SINE Alu -3 309 1 20228 160 61 16 chrX 175055184 175058199 -1915941 - L1 LINE L1 -4293 3272 14 42200 37 21 1 chrX 175058671 175064699 -1909441 - L1PA3 LINE L1 0 6155 3 438 159 21 0 chrX 175064754 175064899 -1909241 + (TA)n Simple_repeat Simple_repeat 1 148 0 316 261 45 0 chrX 175064902 175064990 -1909150 - L1MC4 LINE L1 -1337 6705 6614 * 343 306 0 0 chrX 175064919 175065017 -1909123 + L1MC4 LINE L1 6615 6712 -1330 251 229 167 10 chrX 175065051 175065147 -1908993 + HAL1 LINE L1 24 134 -2373 338 326 138 26 chrX 175065233 175065500 -1908640 + HAL1 LINE L1 238 544 -1963 1726 167 52 65 chrX 175065500 175065901 -1908239 - MSTD LTR MaLR 0 396 1 338 326 138 26 chrX 175065901 175065937 -1908203 + HAL1 LINE L1 544 575 -1932 1811 186 3 0 chrX 175066431 175066742 -1907398 - AluJo SINE Alu 0 312 1 678 115 10 0 chrX 175067309 175067405 -1906735 - Tigger7 DNA MER2_type -1 2486 2390 * 1169 219 105 4 chrX 175067403 175067641 -1906499 - Tigger7 DNA MER2_type -2224 263 2 240 91 0 0 chrX 175068060 175068093 -1906047 + L2 LINE L2 3273 3305 -8 24 0 0 0 chrX 175068384 175068408 -1905732 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 175068470 175068499 -1905641 + AT_rich Low_complexity Low_complexity 1 29 0 753 238 6 18 chrX 175068568 175068732 -1905408 + MIR SINE MIR 32 193 -69 258 32 0 0 chrX 175068756 175068787 -1905353 + (TG)n Simple_repeat Simple_repeat 1 31 0 8142 125 23 4 chrX 175068863 175070139 -1904001 - HSMAR2 DNA Mariner -1 1301 2 3903 180 16 31 chrX 175070382 175070681 -1903459 - MER44D DNA MER2_type -1882 605 303 407 128 13 13 chrX 175070681 175070759 -1903381 - L1PA10 LINE L1 -6 6162 6085 3903 180 16 31 chrX 175070759 175071203 -1902937 - MER44D DNA MER2_type -2184 303 1 1839 227 78 23 chrX 175071356 175072140 -1902000 - L1ME3 LINE L1 -322 5840 5011 1968 128 7 11 chrX 175072570 175072852 -1901288 + AluSx SINE Alu 14 294 -18 3304 170 22 62 chrX 175073300 175074261 -1899879 + L1MA9 LINE L1 4907 5820 -492 7350 36 10 0 chrX 175074261 175075188 -1898952 + L1PA5 LINE L1 5218 6153 -1 3304 170 22 62 chrX 175075188 175075277 -1898863 + L1MA9 LINE L1 5820 5911 -401 6393 28 1 0 chrX 175075277 175076024 -1898116 - L1PA3 LINE L1 -3 6152 5405 9551 26 0 0 chrX 175076025 175077172 -1896968 + L1PA3 LINE L1 4243 5389 -757 1246 219 28 3 chrX 175077202 175077490 -1896650 + L1MA9 LINE L1 5980 6274 -38 23 0 0 0 chrX 175077594 175077617 -1896523 + AT_rich Low_complexity Low_complexity 1 23 0 189 318 61 0 chrX 175077924 175077990 -1896150 + L2 LINE L2 3242 3311 -2 201 179 268 0 chrX 175078642 175078698 -1895442 - L2 LINE L2 -9 3304 3234 313 315 132 51 chrX 175078862 175079097 -1895043 + L2 LINE L2 2550 2803 -511 528 384 29 7 chrX 175079172 175079479 -1894661 - L2 LINE L2 -448 2866 2553 219 362 37 87 chrX 175079590 175079913 -1894227 + L2 LINE L2 2957 3263 -9 270 233 150 23 chrX 175081035 175081168 -1892972 - L1ME4a LINE L1 -2 6119 5970 678 241 105 26 chrX 175081220 175081448 -1892692 + MIR SINE MIR 5 250 -12 4209 178 62 58 chrX 175081629 175082696 -1891444 - MER11C LTR ERVK 0 1071 1 979 304 83 22 chrX 175083034 175083396 -1890744 + L2 LINE L2 2930 3313 0 733 213 60 68 chrX 175083463 175083712 -1890428 + L1MC3 LINE L1 6995 7241 -544 203 0 0 36 chrX 175083728 175083756 -1890384 + (CCCCCG)n Simple_repeat Simple_repeat 4 30 0 1720 198 106 9 chrX 175083758 175084182 -1889958 + MLT1D LTR MaLR 30 494 -11 451 375 46 54 chrX 175084594 175085076 -1889064 + L2 LINE L2 2278 2755 -559 243 405 23 8 chrX 175085194 175085325 -1888815 + L2 LINE L2 2950 3082 -190 2030 138 0 0 chrX 175085325 175085638 -1888502 - AluJb SINE Alu 0 313 1 7080 9 1 0 chrX 175085675 175086476 -1887664 - L1PA2 LINE L1 0 6155 5354 * 7661 23 0 0 chrX 175086470 175087381 -1886759 + L1PA2 LINE L1 4446 5356 -790 1070 244 36 16 chrX 175087460 175087710 -1886430 - MIR SINE MIR -1 261 7 321 287 19 46 chrX 175087715 175087823 -1886317 + L2 LINE L2 3182 3286 -27 1472 136 140 4 chrX 175089036 175089301 -1884839 - AluJo SINE Alu 0 302 2 248 271 98 53 chrX 175089898 175090031 -1884109 - MIR3 SINE MIR -21 187 49 1942 171 136 11 chrX 175090572 175091021 -1883119 - MLT1D LTR MaLR 0 505 1 21 36 0 0 chrX 175091095 175091123 -1883017 + AT_rich Low_complexity Low_complexity 1 28 0 496 193 0 0 chrX 175091201 175091284 -1882856 + MER2 DNA MER2_type 1 83 -262 1865 192 78 21 chrX 175091302 175091775 -1882365 - L1MC4 LINE L1 -305 7737 7238 1727 206 114 42 chrX 175091776 175092330 -1881810 - L1MC4 LINE L1 -960 7082 6489 709 167 18 0 chrX 175093080 175093194 -1880946 - FLAM_C SINE Alu -17 116 1 459 0 0 0 chrX 175093782 175093833 -1880307 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2256 72 14 0 chrX 175093835 175094114 -1880026 - AluSp SINE Alu -30 283 1 1848 144 13 29 chrX 175094541 175094847 -1879293 - AluJb SINE Alu -11 301 1 1310 184 27 83 chrX 175095471 175095807 -1878333 - MER46C DNA MER2_type -13 325 9 209 284 127 52 chrX 175096279 175096413 -1877727 + MIR SINE MIR 78 221 -41 502 134 0 12 chrX 175096607 175096689 -1877451 + LTR41 LTR ERVL 1 81 -692 225 0 0 0 chrX 175096695 175096720 -1877420 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 4671 37 3 0 chrX 175096728 175097293 -1876847 - L1PA4 LINE L1 -4 6151 5585 337 253 42 21 chrX 175097316 175097411 -1876729 + LTR41 LTR ERVL 70 166 -607 217 206 41 21 chrX 175097475 175097572 -1876568 + (TA)n Simple_repeat Simple_repeat 2 100 0 1123 230 77 108 chrX 175097652 175098095 -1876045 + LTR41 LTR ERVL 340 768 -5 2402 188 39 39 chrX 175100349 175100893 -1873247 + L1MB5 LINE L1 5585 6131 -43 813 38 0 19 chrX 175100893 175100999 -1873141 + L1PA8 LINE L1 6069 6172 0 2402 188 39 39 chrX 175100999 175101044 -1873096 + L1MB5 LINE L1 6130 6174 0 29 28 0 0 chrX 175101339 175101375 -1872765 + AT_rich Low_complexity Low_complexity 1 36 0 1406 167 110 19 chrX 175101376 175101639 -1872501 - AluJo SINE Alu -25 287 1 1937 141 7 0 chrX 175101879 175102163 -1871977 + AluJo SINE Alu 3 288 -24 273 163 0 0 chrX 175102165 175102214 -1871926 + GA-rich Low_complexity Low_complexity 1 49 0 2481 64 3 0 chrX 175102393 175102691 -1871449 + AluSp SINE Alu 1 299 -14 1070 266 0 30 chrX 175102813 175103080 -1871060 + MIR SINE MIR 3 261 -1 343 314 62 73 chrX 175103205 175103546 -1870594 + L2 LINE L2 2936 3272 0 432 0 0 0 chrX 175104534 175104582 -1869558 + (GA)n Simple_repeat Simple_repeat 2 49 0 491 311 109 56 chrX 175106435 175106757 -1867383 - L2 LINE L2 -33 3239 2901 22 35 0 0 chrX 175106990 175107019 -1867121 + AT_rich Low_complexity Low_complexity 1 29 0 263 311 87 56 chrX 175107019 175107180 -1866960 + MIR SINE MIR 1 166 -96 461 295 47 16 chrX 175110282 175110411 -1863729 + L2 LINE L2 3121 3253 -19 28 0 0 0 chrX 175110964 175110992 -1863148 + AT_rich Low_complexity Low_complexity 1 28 0 287 286 45 58 chrX 175113136 175113290 -1860850 - MIR SINE MIR -32 230 79 267 243 270 26 chrX 175113674 175113826 -1860314 + MER5A DNA MER1_type 1 189 0 21 57 0 0 chrX 175116606 175116641 -1857499 + AT_rich Low_complexity Low_complexity 1 35 0 261 290 0 14 chrX 175116879 175116948 -1857192 - L2 LINE L2 -4 3309 3242 2137 106 0 3 chrX 175117198 175117509 -1856631 + AluSx SINE Alu 2 311 0 387 331 43 14 chrX 175119387 175119526 -1854614 + MIR3 SINE MIR 32 174 -34 23 0 0 0 chrX 175119843 175119866 -1854274 + AT_rich Low_complexity Low_complexity 1 23 0 2102 136 0 0 chrX 175120740 175121041 -1853099 + AluSx SINE Alu 3 303 -9 264 77 0 0 chrX 175121216 175121255 -1852885 + (TG)n Simple_repeat Simple_repeat 2 40 0 229 213 0 21 chrX 175121681 175121728 -1852412 + (TATG)n Simple_repeat Simple_repeat 2 47 0 278 221 0 29 chrX 175122581 175122649 -1851491 + G-rich Low_complexity Low_complexity 1 66 0 180 0 0 0 chrX 175125137 175125157 -1848983 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 795 302 243 25 chrX 175128000 175128527 -1845613 - L3 LINE CR1 -11 1566 925 14145 33 2 5 chrX 175129243 175130969 -1843171 - L1PA4 LINE L1 -880 5266 3545 7076 37 11 0 chrX 175130969 175131835 -1842305 + L1PA4 LINE L1 5279 6154 -1 207 254 60 60 chrX 175131878 175131945 -1842195 - L2 LINE L2 -7 3265 3199 3331 5 0 0 chrX 175132223 175132596 -1841544 - L1HS LINE L1 0 6155 5783 3107 9 0 0 chrX 175132596 175132942 -1841198 + L1P1 LINE L1 5390 5735 -420 330 333 85 20 chrX 175133493 175133646 -1840494 - MIR SINE MIR -74 188 26 1795 259 126 20 chrX 175134127 175134206 -1839934 - MLT1E2 LTR MaLR 0 626 557 1778 130 61 4 chrX 175134206 175134364 -1839776 - AluJo SINE Alu -18 294 112 207 0 0 0 chrX 175134364 175134387 -1839753 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1778 130 61 4 chrX 175134387 175134505 -1839635 - AluJo SINE Alu -200 112 2 1795 259 126 20 chrX 175134505 175134980 -1839160 - MLT1E2 LTR MaLR -69 557 13 667 169 0 63 chrX 175136191 175136333 -1837807 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chrX 175137509 175137532 -1836608 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chrX 175137656 175137688 -1836452 + AT_rich Low_complexity Low_complexity 1 32 0 358 264 0 0 chrX 175137790 175137862 -1836278 + L2 LINE L2 3201 3272 0 1606 144 54 39 chrX 175137955 175138288 -1835852 + MER44D DNA MER2_type 2 609 0 232 344 53 42 chrX 175139197 175139386 -1834754 - L2 LINE L2 -693 2621 2431 27 29 0 0 chrX 175140153 175140187 -1833953 + AT_rich Low_complexity Low_complexity 1 34 0 342 195 0 0 chrX 175141971 175142048 -1832092 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 308 300 174 5 chrX 175142754 175142865 -1831275 + MIR SINE MIR 29 120 -142 8081 34 0 0 chrX 175142865 175144596 -1829544 - L1PA3 LINE L1 -3 6152 4420 308 300 174 5 chrX 175144596 175144674 -1829466 + MIR SINE MIR 120 250 -12 225 149 43 0 chrX 175145792 175145839 -1828301 + T-rich Low_complexity Low_complexity 6 54 0 2197 120 3 0 chrX 175145936 175146244 -1827896 - AluSq SINE Alu -4 309 1 230 221 59 29 chrX 175147292 175147360 -1826780 - L1M LINE L1 -2408 5400 5331 354 189 70 10 chrX 175148227 175148367 -1825773 - MER20 DNA MER1_type -1 218 30 211 260 151 0 chrX 175149072 175149145 -1824995 - L2 LINE L2 -4 3309 3226 1033 268 73 39 chrX 175150159 175150514 -1823626 + L2 LINE L2 2946 3312 -1 271 331 85 23 chrX 175150812 175150942 -1823198 - MIR3 SINE MIR -1 207 70 377 245 29 39 chrX 175151009 175151111 -1823029 - MER5B DNA MER1_type -15 163 63 756 312 46 4 chrX 175151131 175151368 -1822772 + MIR SINE MIR 16 262 0 204 225 28 14 chrX 175154190 175154261 -1819879 + T-rich Low_complexity Low_complexity 6 77 0 5635 34 0 1 chrX 175154265 175154939 -1819201 - L1PA5 LINE L1 -11 6143 5471 254 251 142 0 chrX 175154968 175155041 -1819099 - MIR SINE MIR -56 152 71 492 236 28 0 chrX 175155228 175155334 -1818806 + MIR3 SINE MIR 82 190 -18 336 255 260 39 chrX 175156023 175156227 -1817913 + MIR SINE MIR 1 249 -13 238 280 51 85 chrX 175156298 175156416 -1817724 + L2 LINE L2 3200 3313 0 209 313 90 42 chrX 175156452 175156596 -1817544 - MIR SINE MIR -111 151 1 199 284 172 26 chrX 175158152 175158268 -1815872 + MIR SINE MIR 117 249 -13 832 250 86 5 chrX 175158397 175158617 -1815523 + MIR SINE MIR 25 262 0 246 290 65 0 chrX 175158662 175158724 -1815416 + MIR SINE MIR 197 262 0 225 237 462 0 chrX 175158721 175158814 -1815326 - MIR SINE MIR -13 249 114 * 1846 163 0 10 chrX 175158824 175159112 -1815028 - AluJb SINE Alu -11 301 17 457 286 90 57 chrX 175159941 175160186 -1813954 - MIR SINE MIR -8 254 2 22 35 0 0 chrX 175160979 175161008 -1813132 + AT_rich Low_complexity Low_complexity 1 29 0 2008 127 4 0 chrX 175162162 175162438 -1811702 + AluSx SINE Alu 1 277 -35 216 0 0 0 chrX 175162438 175162462 -1811678 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 446 146 0 0 chrX 175163432 175163514 -1810626 - L1MA4 LINE L1 -9 6291 6210 265 333 25 12 chrX 175163514 175163595 -1810545 - L2 LINE L2 -1 3271 3190 825 260 17 0 chrX 175163626 175163807 -1810333 + MIR SINE MIR 6 189 -73 196 111 0 0 chrX 175163854 175163881 -1810259 - L2 LINE L2 -105 3208 3182 21 0 0 0 chrX 175164015 175164036 -1810104 + AT_rich Low_complexity Low_complexity 1 21 0 1101 290 26 7 chrX 175164111 175164414 -1809726 - MLT1J LTR MaLR -202 309 1 654 212 285 26 chrX 175164547 175164740 -1809400 - MIR SINE MIR -3 259 17 283 346 78 13 chrX 175165006 175165159 -1808981 + MIR SINE MIR 2 164 -98 2912 140 37 4 chrX 175165179 175165692 -1808448 - L1MA6 LINE L1 -2 6298 5769 24 0 0 0 chrX 175165725 175165749 -1808391 + AT_rich Low_complexity Low_complexity 1 24 0 1889 58 0 8 chrX 175165755 175165996 -1808144 - L1PA5 LINE L1 -7 6147 5909 3315 135 28 8 chrX 175165996 175166868 -1807272 - L1MA6 LINE L1 -513 5787 4900 * 4134 149 25 3 chrX 175166864 175167609 -1806531 + L1MA6 LINE L1 4138 4899 -1247 2415 72 0 3 chrX 175167994 175168298 -1805842 - AluY SINE Alu -8 303 1 243 292 0 14 chrX 175168308 175168380 -1805760 + Charlie8 DNA MER1_type 2341 2411 -6 3199 16 0 0 chrX 175168611 175168977 -1805163 + L1PA2 LINE L1 5788 6153 -2 246 125 0 0 chrX 175168981 175169029 -1805111 + (TAAAA)n Simple_repeat Simple_repeat 2 49 0 186 307 67 13 chrX 175169033 175169108 -1805032 + L2 LINE L2 3184 3262 -10 351 349 27 14 chrX 175170851 175170997 -1803143 - MIR3 SINE MIR -58 150 3 218 231 13 77 chrX 175172411 175172489 -1801651 + MIR SINE MIR 125 197 -65 286 327 81 58 chrX 175172534 175172944 -1801196 + L2 LINE L2 2475 2893 -421 273 258 34 45 chrX 175173096 175173185 -1800955 + L3 LINE CR1 1479 1566 -11 223 303 211 9 chrX 175173561 175173670 -1800470 + L2 LINE L2 3141 3271 -1 216 259 19 0 chrX 175174259 175174313 -1799827 + CT-rich Low_complexity Low_complexity 2 56 0 360 59 0 0 chrX 175174894 175174945 -1799195 + (CA)n Simple_repeat Simple_repeat 2 52 0 523 252 0 26 chrX 175175587 175175702 -1798438 - L2 LINE L2 -11 3302 3191 205 291 35 58 chrX 175176139 175176225 -1797915 + L2 LINE L2 3180 3263 -9 198 143 0 0 chrX 175176233 175176268 -1797872 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 257 192 37 22 chrX 175176522 175176581 -1797559 - MER5A DNA MER1_type 0 189 121 1227 163 5 0 chrX 175176583 175176798 -1797342 + L1PB3 LINE L1 2446 2661 -4202 31133 39 2 1 chrX 175176798 175182944 -1791196 + L1PA3 LINE L1 2 6155 0 13289 182 35 8 chrX 175182960 175183216 -1790924 + L1PB3 LINE L1 2647 2895 -3975 1870 152 0 0 chrX 175183216 175183492 -1790648 + AluSx SINE Alu 1 276 -36 13289 182 35 8 chrX 175183492 175187350 -1786790 + L1PB3 LINE L1 2895 6869 -1 543 266 24 0 chrX 175187354 175187478 -1786662 - MER5A DNA MER1_type -51 138 12 6460 36 7 0 chrX 175187492 175188416 -1785724 - L1PA4 LINE L1 -663 5492 4564 5267 39 11 0 chrX 175188416 175189049 -1785091 + L1PA4 LINE L1 5506 6148 -7 240 32 0 0 chrX 175189056 175189066 -1785074 + (TAAA)n Simple_repeat Simple_repeat 2 11 -21 2758 23 0 0 chrX 175189066 175189374 -1784766 + AluYa5 SINE Alu 1 308 -3 240 32 0 0 chrX 175189374 175189394 -1784746 + (TAAA)n Simple_repeat Simple_repeat 10 32 0 234 0 0 0 chrX 175189506 175189532 -1784608 + (TAAAAA)n Simple_repeat Simple_repeat 4 29 0 6355 143 29 36 chrX 175189544 175190629 -1783511 - L1MA5 LINE L1 -11 6289 5198 2389 91 7 0 chrX 175190629 175190938 -1783202 - AluSp SINE Alu -2 311 1 6355 143 29 36 chrX 175190938 175192114 -1782026 - L1MA5 LINE L1 -1102 5198 4048 1755 113 53 39 chrX 175192541 175192825 -1781315 - AluSc SINE Alu -21 288 1 9596 179 15 15 chrX 175192833 175194935 -1779205 - L1 LINE L1 -820 6745 4644 5531 197 61 11 chrX 175195035 175195070 -1779070 - L1MA5 LINE L1 -2417 3729 3697 198 71 0 0 chrX 175195070 175195098 -1779042 + (TG)n Simple_repeat Simple_repeat 2 29 0 5531 197 61 11 chrX 175195098 175196541 -1777599 - L1MA5 LINE L1 -2449 3697 2177 644 118 36 0 chrX 175196552 175196662 -1777478 - L1MA3 LINE L1 -2 6303 6190 1022 214 77 3 chrX 175196663 175196962 -1777178 + L1 LINE L1 2468 2788 -3358 * 1610 125 30 7 chrX 175196952 175197255 -1776885 - L1MA3 LINE L1 -116 6189 5880 2625 258 26 2 chrX 175197358 175198195 -1775945 - L1 LINE L1 -2998 4567 3711 5072 167 15 4 chrX 175198201 175199910 -1774230 - L1PB1 LINE L1 -227 6640 4917 7461 112 66 1 chrX 175199910 175201415 -1772725 - L1PB1 LINE L1 -4230 2633 885 * 13283 163 18 2 chrX 175201409 175203755 -1770385 - L1 LINE L1 -5090 2475 92 474 280 0 8 chrX 175203915 175204047 -1770093 - L1PB1 LINE L1 -6712 151 21 426 307 203 0 chrX 175204103 175204315 -1769825 + MIR SINE MIR 8 262 0 255 217 0 43 chrX 175204801 175204870 -1769270 + CT-rich Low_complexity Low_complexity 3 68 0 352 353 37 7 chrX 175204900 175205036 -1769104 + MER5A DNA MER1_type 2 141 -48 2298 114 0 0 chrX 175205046 175205352 -1768788 + AluSg SINE Alu 1 306 -4 193 260 0 20 chrX 175206604 175206654 -1767486 - MIR SINE MIR -174 88 40 194 374 122 0 chrX 175207580 175207695 -1766445 - MIR SINE MIR -114 148 20 244 86 0 0 chrX 175207701 175207736 -1766404 - MLT1B LTR MaLR 0 374 340 13229 137 25 7 chrX 175207744 175209992 -1764148 + Tigger1 DNA MER2_type 26 2312 -106 6842 49 0 17 chrX 175209999 175210968 -1763172 - L1PA7 LINE L1 -4 6150 5171 2987 90 2 15 chrX 175210969 175211436 -1762704 + L1PA7 LINE L1 4713 5173 -973 761 136 0 0 chrX 175211437 175211555 -1762585 + Tigger1 DNA MER2_type 2301 2418 0 * 1575 172 27 49 chrX 175211555 175211867 -1762273 - MLT1B LTR MaLR -32 358 54 873 226 84 75 chrX 175211867 175212225 -1761915 - MLT1A1 LTR MaLR -4 361 1 1575 172 27 49 chrX 175212225 175212278 -1761862 - MLT1B LTR MaLR -336 54 1 2484 60 3 0 chrX 175212398 175212696 -1761444 - AluY SINE Alu -12 299 1 188 362 95 22 chrX 175213401 175213633 -1760507 - L3 LINE CR1 -1142 435 187 222 171 0 0 chrX 175214435 175214470 -1759670 - L3 LINE CR1 -17 1560 1526 475 259 105 20 chrX 175214493 175214712 -1759428 + MIR SINE MIR 2 235 -27 399 241 57 18 chrX 175214720 175214870 -1759270 - MIR SINE MIR -69 139 2 522 312 14 0 chrX 175215205 175215343 -1758797 - MIR3 SINE MIR -58 150 11 180 0 0 0 chrX 175216937 175216957 -1757183 + (CA)n Simple_repeat Simple_repeat 1 20 0 201 278 42 42 chrX 175217076 175217148 -1756992 - L2 LINE L2 -6 3307 3236 206 366 45 9 chrX 175217247 175217359 -1756781 - L2 LINE L2 -254 3018 2903 2412 70 0 0 chrX 175217492 175217791 -1756349 - AluY SINE Alu -12 299 1 469 276 39 106 chrX 175219394 175219753 -1754387 - MLT1I LTR MaLR 0 409 75 270 0 0 0 chrX 175219947 175219977 -1754163 + (CA)n Simple_repeat Simple_repeat 2 31 0 564 66 0 13 chrX 175620780 175620856 -1353284 - L1PA16 LINE L1 -268 5898 5824 4347 59 33 0 chrX 175621184 175621763 -1352377 - L1PA7 LINE L1 -5 6149 5552 1786 97 34 16 chrX 175621763 175622160 -1351980 + L1PA7 LINE L1 5152 5564 -590 743 221 138 0 chrX 175622172 175622498 -1351642 + L1M4 LINE L1 3081 3451 -2695 289 257 27 0 chrX 175622598 175622672 -1351468 + L2 LINE L2 3188 3263 -9 576 364 64 37 chrX 175623357 175623843 -1350297 - L2 LINE L2 -480 2834 2336 363 363 7 0 chrX 175624983 175625118 -1349022 + MIR3 SINE MIR 46 181 -27 817 209 47 63 chrX 175625395 175625649 -1348491 + MIR SINE MIR 13 262 0 2047 178 3 11 chrX 175625870 175626241 -1347899 - L1PA16 LINE L1 -9 6157 5790 2338 36 20 20 chrX 175628216 175628520 -1345620 + AluY SINE Alu 1 304 -7 556 126 108 0 chrX 175629288 175629399 -1344741 - L1PA16 LINE L1 -16 6150 6028 18150 123 38 4 chrX 175629566 175632493 -1341647 - L1P LINE L1 -1277 4869 1843 2696 46 3 0 chrX 175632505 175632834 -1341306 - L1PA3 LINE L1 0 6155 5826 11104 28 5 0 chrX 175632834 175634614 -1339526 + L1PA3 LINE L1 4054 5838 -317 2820 108 0 0 chrX 175634598 175635007 -1339133 - L1P LINE L1 -4288 1858 1450 * 227 383 0 31 chrX 175635069 175635197 -1338943 + L2 LINE L2 2569 2692 -622 1121 338 83 24 chrX 175635201 175635919 -1338221 + L2 LINE L2 2302 3062 -251 241 312 111 69 chrX 175636079 175636268 -1337872 - L2 LINE L2 -499 2815 2619 1767 72 140 8 chrX 175637216 175637481 -1336659 + AluSc SINE Alu 1 300 -9 269 241 112 60 chrX 175637974 175638090 -1336050 + MIR SINE MIR 56 177 -85 308 226 0 14 chrX 175638151 175638223 -1335917 + MIR3 SINE MIR 98 169 -39 2233 279 113 20 chrX 175638949 175640003 -1334137 - L2 LINE L2 0 3313 2174 314 203 67 4 chrX 175640005 175640341 -1333799 + (TA)n Simple_repeat Simple_repeat 1 357 0 510 269 115 18 chrX 175640344 175640586 -1333554 - MLT1J2 LTR MaLR -183 263 7 28 48 0 0 chrX 175640639 175640681 -1333459 + AT_rich Low_complexity Low_complexity 1 42 0 267 259 0 0 chrX 175640728 175640786 -1333354 - MLT1J2 LTR MaLR -328 122 65 39 74 0 0 chrX 175640792 175640873 -1333267 + AT_rich Low_complexity Low_complexity 1 81 0 261 288 0 0 chrX 175640878 175640937 -1333203 - L2 LINE L2 -1161 2153 2095 1420 247 11 30 chrX 175641096 175641504 -1332636 + L1ME1 LINE L1 3972 4373 -1773 7112 96 6 40 chrX 175641504 175642610 -1331530 + MER11C LTR ERVK 3 1071 0 1420 247 11 30 chrX 175642610 175642634 -1331506 + L1ME1 LINE L1 4373 4396 -1750 4508 161 49 16 chrX 175642649 175643949 -1330191 + L1PB4 LINE L1 4770 6118 -38 3004 233 58 34 chrX 175643943 175645654 -1328486 + L1ME1 LINE L1 4395 6140 -26 * 254 239 104 0 chrX 175645895 175645962 -1328178 + L2 LINE L2 3157 3230 -42 339 311 124 31 chrX 175646188 175646381 -1327759 + MIR SINE MIR 42 252 -10 612 342 49 21 chrX 175647138 175647381 -1326759 - MIR SINE MIR -2 260 11 312 221 16 16 chrX 175647920 175648047 -1326093 + (TA)n Simple_repeat Simple_repeat 1 127 0 904 56 8 8 chrX 175648963 175649089 -1325051 - L1PA3 LINE L1 -138 6017 5892 343 200 62 0 chrX 175649521 175649601 -1324539 + L1MB7 LINE L1 6099 6183 -1 491 315 59 31 chrX 175649624 175649846 -1324294 - MIR SINE MIR -13 249 22 6068 112 8 0 chrX 175650315 175651262 -1322878 - L1PB2 LINE L1 -3 6148 5195 449 74 74 32 chrX 175651554 175651649 -1322491 + L1MA4A LINE L1 6197 6295 -8 3486 63 13 11 chrX 175651803 175652278 -1321862 - L1PA8 LINE L1 -1 6171 5696 277 306 105 83 chrX 175652521 175652750 -1321390 + L2 LINE L2 2971 3204 -68 773 299 87 4 chrX 175652752 175652993 -1321147 + MIR SINE MIR 2 262 0 376 214 0 0 chrX 175652999 175653069 -1321071 + L2 LINE L2 3203 3272 0 192 400 27 0 chrX 175653120 175653195 -1320945 + L2 LINE L2 3157 3233 -39 656 308 47 30 chrX 175653713 175653947 -1320193 + MIR SINE MIR 25 262 0 618 270 31 31 chrX 175654119 175654315 -1319825 + MIR SINE MIR 53 248 -14 380 252 65 0 chrX 175654455 175654562 -1319578 - MIR SINE MIR -12 250 137 5871 146 21 7 chrX 175654574 175655975 -1318165 + L1PB2 LINE L1 4726 6149 -2 28 29 0 0 chrX 175656402 175656437 -1317703 + AT_rich Low_complexity Low_complexity 1 35 0 7256 159 27 19 chrX 175657517 175659796 -1314344 + L1M4 LINE L1 2325 4627 -2938 3966 194 13 48 chrX 175659989 175661435 -1312705 - L1P4 LINE L1 -464 5702 4316 23 33 0 0 chrX 175662968 175662998 -1311142 + AT_rich Low_complexity Low_complexity 1 30 0 357 217 61 0 chrX 175663213 175663328 -1310812 + L1M4 LINE L1 5782 5903 -1662 198 103 0 0 chrX 175664619 175664648 -1309492 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chrX 175664695 175664718 -1309422 + AT_rich Low_complexity Low_complexity 1 23 0 2312 145 6 11 chrX 175665217 175665583 -1308557 - THE1B LTR MaLR 0 364 1 9700 129 30 12 chrX 175665583 175667134 -1307006 - THE1B-int LTR MaLR 0 1580 1 2459 118 6 11 chrX 175667134 175667500 -1306640 - THE1B LTR MaLR 0 364 1 237 315 115 56 chrX 175667727 175667997 -1306143 + MLT1L LTR MaLR 15 300 -315 817 315 94 36 chrX 175668552 175669085 -1305055 + L1MCc LINE L1 653 1216 -5207 1536 275 117 5 chrX 175669124 175669553 -1304587 - REP3 LTR ERV -85 477 1 552 214 14 21 chrX 175669559 175669704 -1304436 + L1MCc LINE L1 1211 1354 -5069 * 5344 214 19 41 chrX 175669693 175671712 -1302428 + L1PA15 LINE L1 1431 3492 -2673 2270 91 0 23 chrX 175671712 175672021 -1302119 + AluY SINE Alu 1 302 -9 5344 214 19 41 chrX 175672021 175672794 -1301346 + L1PA15 LINE L1 3492 4280 -1885 234 0 0 0 chrX 175672794 175672820 -1301320 + (TC)n Simple_repeat Simple_repeat 1 26 0 5344 214 19 41 chrX 175672820 175674781 -1299359 + L1PA15 LINE L1 4280 6158 -7 542 257 28 23 chrX 175674784 175674998 -1299142 + L1MCc LINE L1 1321 1535 -4888 400 300 64 28 chrX 175675174 175675424 -1298716 + L1M4 LINE L1 2 260 -6282 2097 142 3 0 chrX 175675736 175676047 -1298093 + AluSx SINE Alu 1 312 0 330 286 34 17 chrX 175676072 175676191 -1297949 + L1M4 LINE L1 806 926 -5720 2283 146 8 8 chrX 175676269 175676632 -1297508 - THE1B LTR MaLR 0 364 2 6402 135 14 4 chrX 175676632 175677585 -1296555 - THE1B-int LTR MaLR -9 1571 610 543 155 144 0 chrX 175677585 175677682 -1296458 - THE1B LTR MaLR -205 159 49 * 856 161 98 0 chrX 175677680 175677823 -1296317 - THE1B LTR MaLR -205 159 3 1694 220 86 99 chrX 175677836 175678362 -1295778 + L1M4 LINE L1 857 1388 -5258 2180 88 4 0 chrX 175678362 175678634 -1295506 + AluSc SINE Alu 1 273 -36 1694 220 86 99 chrX 175678634 175678694 -1295446 + L1M4 LINE L1 1388 1447 -5199 192 40 0 0 chrX 175678694 175678719 -1295421 + (CA)n Simple_repeat Simple_repeat 2 26 0 1694 220 86 99 chrX 175678719 175679151 -1294989 + L1M4 LINE L1 1447 1862 -4784 628 304 18 13 chrX 175679171 175679398 -1294742 + L1PA12 LINE L1 1 228 -7353 292 274 14 0 chrX 175679617 175679690 -1294450 + L1M2 LINE L1 758 831 -6018 245 274 154 86 chrX 175679782 175680016 -1294124 + L1M2 LINE L1 819 1068 -5781 1051 290 28 16 chrX 175680226 175680697 -1293443 + L1PA12 LINE L1 1779 2330 -5254 640 239 15 25 chrX 175680703 175680900 -1293240 + L1PA12 LINE L1 2466 2660 -4924 1892 201 21 16 chrX 175681302 175681725 -1292415 - L1PA15-16 LINE L1 -4038 2811 2387 4995 229 37 14 chrX 175681756 175683724 -1290416 + L1PA12 LINE L1 2684 4699 -2885 * 9523 46 7 67 chrX 175683722 175685093 -1289047 - L1PA3 LINE L1 -1731 4415 3127 8111 30 0 0 chrX 175685093 175686829 -1287311 + L1PA3 LINE L1 4417 6152 -3 8870 163 7 59 chrX 175686867 175687743 -1286397 + L1MA1 LINE L1 3249 4169 -2133 2807 10 0 0 chrX 175687743 175688048 -1286092 + AluYa5 SINE Alu 1 305 -6 8870 163 7 59 chrX 175688048 175690405 -1283735 + L1MA1 LINE L1 4169 6302 0 25 31 0 0 chrX 175690405 175690437 -1283703 + AT_rich Low_complexity Low_complexity 1 32 0 5646 140 11 6 chrX 175690438 175691148 -1282992 + L1MA2 LINE L1 5353 6070 -234 1862 144 65 34 chrX 175691148 175691501 -1282639 + THE1B LTR MaLR 1 364 0 5646 140 11 6 chrX 175691501 175691737 -1282403 + L1MA2 LINE L1 6070 6303 -1 3138 231 30 12 chrX 175691760 175693059 -1281081 + L1MD2 LINE L1 4643 5967 -392 268 287 9 0 chrX 175693072 175693180 -1280960 + L1ME1 LINE L1 1498 1606 -4820 2870 233 38 40 chrX 175693194 175694360 -1279780 + L1ME1 LINE L1 3125 4287 -2139 1448 242 32 24 chrX 175694495 175694991 -1279149 + L1ME1 LINE L1 4253 4752 -1674 2608 227 60 26 chrX 175696296 175697098 -1277042 + L1ME1 LINE L1 4743 5627 -819 2058 176 49 17 chrX 175697098 175697508 -1276632 - MSTB LTR MaLR 0 426 4 2608 227 60 26 chrX 175697508 175698177 -1275963 + L1ME1 LINE L1 5627 6272 -174 1206 276 100 55 chrX 175698178 175698301 -1275839 + L2 LINE L2 2751 2867 -446 2076 114 17 3 chrX 175698301 175698599 -1275541 - AluSc SINE Alu -5 304 3 1206 276 100 55 chrX 175698599 175698999 -1275141 + L2 LINE L2 2867 3313 0 23 78 0 0 chrX 175699151 175699202 -1274938 + AT_rich Low_complexity Low_complexity 1 51 0 332 373 19 12 chrX 175699472 175699633 -1274507 + MER5B DNA MER1_type 1 162 -16 24 0 0 0 chrX 175700290 175700314 -1273826 + AT_rich Low_complexity Low_complexity 1 24 0 2064 164 5 11 chrX 175700536 175700903 -1273237 - MER47A DNA MER2_type -1 365 1 612 321 101 47 chrX 175701347 175701687 -1272453 + L3 LINE CR1 830 1205 -372 189 107 0 0 chrX 175701687 175701715 -1272425 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 612 321 101 47 chrX 175701715 175701860 -1272280 + L3 LINE CR1 1205 1341 -236 266 417 8 0 chrX 175701877 175701997 -1272143 + L3 LINE CR1 1455 1575 -2 204 40 0 0 chrX 175703388 175703413 -1270727 + (T)n Simple_repeat Simple_repeat 1 25 0 4121 43 2 2 chrX 175703448 175703954 -1270186 - L1PA3 LINE L1 -4 6151 5646 455 311 108 0 chrX 175704173 175704340 -1269800 - L2 LINE L2 -1358 1956 1772 338 272 117 10 chrX 175704784 175704887 -1269253 - MIR SINE MIR -70 138 25 1426 129 39 0 chrX 175706514 175706770 -1267370 + L1MA1 LINE L1 6037 6302 0 384 355 48 5 chrX 175707121 175707307 -1266833 - MER117 DNA MER1_type -1 196 3 17757 178 31 33 chrX 175708549 175711028 -1263112 + L1M1 LINE L1 1 2482 -5083 279 0 0 0 chrX 175711028 175711059 -1263081 + (GA)n Simple_repeat Simple_repeat 2 32 0 17757 178 31 33 chrX 175711059 175714910 -1259230 + L1M1 LINE L1 2482 6512 -1053 656 83 0 21 chrX 175715052 175715148 -1258992 + L1MA3 LINE L1 5770 5863 -441 1679 128 14 3 chrX 175715163 175715445 -1258695 + L1MA3 LINE L1 6016 6300 -5 2202 120 0 0 chrX 175715464 175715763 -1258377 + AluSx SINE Alu 1 299 -13 266 284 0 27 chrX 175715885 175715959 -1258181 + MIR3 SINE MIR 14 85 -123 1956 143 55 27 chrX 175716089 175716454 -1257686 - THE1C LTR MaLR 0 375 1 654 256 53 35 chrX 175717076 175717303 -1256837 + MIR SINE MIR 2 232 -30 976 271 199 16 chrX 175717337 175717414 -1256726 - L2 LINE L2 0 3313 3251 243 0 0 0 chrX 175717414 175717441 -1256699 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 976 271 199 16 chrX 175717441 175718017 -1256123 - L2 LINE L2 -62 3251 2541 433 189 15 91 chrX 175718460 175718592 -1255548 + MIR3 SINE MIR 87 208 0 23 33 0 0 chrX 175718622 175718652 -1255488 + AT_rich Low_complexity Low_complexity 1 30 0 269 293 24 65 chrX 175718678 175718801 -1255339 - MIR SINE MIR -67 141 24 282 432 65 19 chrX 175719584 175720017 -1254123 + L2 LINE L2 2818 3270 -2 2313 161 62 2 chrX 175720171 175720575 -1253565 + MSTA LTR MaLR 1 428 0 383 241 9 56 chrX 175720791 175720899 -1253241 + MIR3 SINE MIR 60 162 -46 23 68 0 0 chrX 175721017 175721061 -1253079 + AT_rich Low_complexity Low_complexity 1 44 0 214 328 115 25 chrX 175722190 175722312 -1251828 + MIR3 SINE MIR 3 135 -73 698 179 7 0 chrX 175723405 175723545 -1250595 - L1MC3 LINE L1 -21 7764 7624 213 39 0 0 chrX 175723547 175723573 -1250567 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1963 165 20 8 chrX 175723581 175723939 -1250201 - L1MA4 LINE L1 -284 6016 5655 1096 129 24 0 chrX 175723939 175724109 -1250031 - L1PA7 LINE L1 0 6154 5981 9386 206 231 19 chrX 175724132 175726090 -1248050 + L1MA3 LINE L1 589 2130 -4175 4470 86 115 42 chrX 175726090 175726803 -1247337 + SVA Other Other 622 1386 0 9386 206 231 19 chrX 175726803 175729530 -1244610 + L1MA3 LINE L1 2130 6305 0 24 0 0 0 chrX 175729530 175729554 -1244586 + AT_rich Low_complexity Low_complexity 1 24 0 229 174 0 0 chrX 175730813 175730859 -1243281 + L1MD3 LINE L1 7933 7978 -17 1850 227 81 56 chrX 175731205 175731814 -1242326 - MLT1E2 LTR MaLR 0 626 3 4057 146 27 13 chrX 175733639 175734336 -1239804 - MER39 LTR ERV1 0 707 1 1097 310 116 28 chrX 175735460 175735933 -1238207 + L2 LINE L2 2319 2865 -448 2246 117 0 0 chrX 175735933 175736233 -1237907 - AluSx SINE Alu -12 300 1 1097 310 116 28 chrX 175736233 175736463 -1237677 + L2 LINE L2 2865 3073 -240 204 125 0 0 chrX 175736817 175736849 -1237291 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 446 257 53 9 chrX 175738111 175738224 -1235916 + MIR3 SINE MIR 77 194 -14 4040 209 41 18 chrX 175739004 175739829 -1234311 + MER21B LTR ERV1 3 846 -17 226 254 15 15 chrX 175740252 175740319 -1233821 + MIR SINE MIR 90 156 -106 480 325 6 0 chrX 175741367 175741533 -1232607 + MER117 DNA MER1_type 4 170 -27 330 26 0 0 chrX 175742204 175742243 -1231897 + (TG)n Simple_repeat Simple_repeat 1 39 0 216 0 0 0 chrX 175742242 175742266 -1231874 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 228 356 0 39 chrX 175742835 175742939 -1231201 + L2 LINE L2 2359 2458 -856 956 169 12 6 chrX 175742947 175743113 -1231027 - MLT1B LTR MaLR -11 379 213 706 235 6 0 chrX 175743159 175743325 -1230815 + L1PA7 LINE L1 31 197 -6666 * 2442 131 15 2 chrX 175743322 175743720 -1230420 + L1PA7 LINE L1 1392 1794 -5069 21921 91 14 7 chrX 175744128 175748140 -1226000 + L1PA7 LINE L1 2824 6859 -11 795 196 53 0 chrX 175748158 175748347 -1225793 + MER33 DNA MER1_type 30 228 -96 10332 174 30 18 chrX 175748348 175750458 -1223682 - LTR25-int LTR ERV1 -2711 4285 2150 4587 92 0 3 chrX 175750452 175751047 -1223093 - HERVL-A2 LTR ERVL -1211 4443 3851 * 25807 91 5 2 chrX 175751045 175754458 -1219682 - HERVL-A2 LTR ERVL -2231 3423 1 2907 108 66 0 chrX 175754458 175754503 -1219637 - MLT2A2 LTR ERVL 0 453 412 507 69 0 0 chrX 175754503 175754575 -1219565 + (TA)n Simple_repeat Simple_repeat 2 73 0 2907 108 66 0 chrX 175754575 175754954 -1219186 - MLT2A2 LTR ERVL -41 412 1 18376 195 41 15 chrX 175754954 175760400 -1213740 - L1 LINE L1 -1961 5604 16 10688 173 30 25 chrX 175760399 175763109 -1211031 - L1M1 LINE L1 -632 5668 2938 * 7913 207 58 84 chrX 175763116 175763512 -1210628 - L1MC3 LINE L1 -166 8037 7632 320 242 32 11 chrX 175763512 175763607 -1210533 - MLT1F1 LTR MaLR -436 131 35 7913 207 58 84 chrX 175763607 175764008 -1210132 - L1MC3 LINE L1 -571 7632 7222 2280 213 39 15 chrX 175764008 175764554 -1209586 + MER89 LTR ERV1 1 559 0 7913 207 58 84 chrX 175764554 175766121 -1208019 - L1MC3 LINE L1 -981 7222 5672 1805 140 7 4 chrX 175766121 175766393 -1207747 + AluSx SINE Alu 23 295 -17 7913 207 58 84 chrX 175766393 175766989 -1207151 - L1MC3 LINE L1 -2531 5672 5062 2057 244 56 22 chrX 175767078 175767397 -1206743 - L1MC3 LINE L1 -3096 3468 3162 2270 85 3 3 chrX 175767397 175767691 -1206449 - AluSg1 SINE Alu -10 299 6 2057 244 56 22 chrX 175767691 175768153 -1205987 - L1MC3 LINE L1 -3402 3162 2660 * 5474 101 19 1 chrX 175768146 175768963 -1205177 + L1PA13 LINE L1 5327 6158 -5 305 189 158 0 chrX 175768986 175769081 -1205059 - L1MC3 LINE L1 -3905 2659 2550 518 183 92 8 chrX 175769088 175769219 -1204921 + MLT1C LTR MaLR 1 142 -325 1876 190 8 9 chrX 175769219 175769602 -1204538 + MLT2D LTR ERVL 1 480 -40 264 30 0 0 chrX 175769636 175769669 -1204471 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chrX 175769668 175769693 -1204447 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 253 191 0 0 chrX 175769695 175769742 -1204398 + MLT2D LTR ERVL 368 414 0 1108 213 55 64 chrX 175769745 175770073 -1204067 + MLT1C LTR MaLR 143 467 0 2239 235 71 26 chrX 175770073 175771858 -1202282 - L1MC3 LINE L1 -4017 2547 572 1382 296 2 24 chrX 175772057 175772550 -1201590 - L1MC3 LINE L1 -5563 482 1 531 281 39 6 chrX 175772582 175772760 -1201380 + Charlie8 DNA MER1_type 90 273 -2144 1546 240 86 16 chrX 175773635 175774170 -1199970 + MLT1E2 LTR MaLR 1 624 -2 2259 183 7 12 chrX 175774170 175774590 -1199550 - MER47B DNA MER2_type 0 418 1 411 38 0 0 chrX 175775806 175775859 -1198281 + (TG)n Simple_repeat Simple_repeat 1 53 0 183 237 0 85 chrX 175776378 175776437 -1197703 - L2 LINE L2 -88 3225 3172 497 263 31 25 chrX 175777042 175777202 -1196938 - MLT1L LTR MaLR -335 280 120 222 118 0 0 chrX 175777421 175777455 -1196685 + (TCC)n Simple_repeat Simple_repeat 2 35 0 655 257 5 43 chrX 175778459 175778646 -1195494 - MIR3 SINE MIR -11 197 18 378 311 66 60 chrX 175778803 175778986 -1195154 + MIR SINE MIR 6 189 -73 539 248 24 110 chrX 175780915 175781161 -1192979 - MIR SINE MIR -10 252 28 5256 139 13 3 chrX 175781846 175783610 -1190530 - L1PA15 LINE L1 -1 6164 4395 3096 276 64 15 chrX 175783625 175784443 -1189697 - L1PA13 LINE L1 -4 6810 5953 3394 204 7 4 chrX 175784450 175785204 -1188936 - L1PA13 LINE L1 -1430 5367 4612 * 6230 212 13 44 chrX 175785195 175787598 -1186542 - L1P LINE L1 -1734 5063 2855 1501 212 86 30 chrX 175787598 175788003 -1186137 + MSTA LTR MaLR 1 428 0 7791 189 16 22 chrX 175788011 175788200 -1185940 + MSTA-int LTR MaLR 9 198 -1453 1713 158 178 8 chrX 175788200 175788566 -1185574 + MSTA LTR MaLR 1 428 0 7791 189 16 22 chrX 175788566 175790027 -1184113 + MSTA-int LTR MaLR 198 1648 -3 1746 215 59 2 chrX 175790036 175790441 -1183699 + MSTA LTR MaLR 1 428 0 3559 239 69 31 chrX 175790442 175793029 -1181111 - L1PA13 LINE L1 -3939 2858 1 733 180 0 90 chrX 175793369 175793536 -1180604 - L1PA13 LINE L1 -6134 653 502 223 266 0 63 chrX 175793561 175793640 -1180500 - MIR SINE MIR -13 249 176 500 164 43 64 chrX 175793697 175793837 -1180303 + L1ME4a LINE L1 5984 6120 -1 322 200 12 12 chrX 175795335 175795420 -1178720 + L1ME4a LINE L1 5967 6051 -70 201 74 0 0 chrX 175796333 175796360 -1177780 + (TTG)n Simple_repeat Simple_repeat 1 27 0 405 257 17 78 chrX 175796811 175796990 -1177150 - L2 LINE L2 -68 3245 3078 1367 318 76 17 chrX 175797026 175797687 -1176453 - L2 LINE L2 -429 2885 2186 474 281 66 77 chrX 175797743 175798120 -1176020 - MLT1K LTR MaLR -64 524 152 22 0 0 0 chrX 175798660 175798682 -1175458 + AT_rich Low_complexity Low_complexity 1 22 0 10131 197 24 9 chrX 175798682 175801802 -1172338 - L1PA14 LINE L1 -4 7595 4441 22 35 0 0 chrX 175801813 175801842 -1172298 + AT_rich Low_complexity Low_complexity 1 29 0 2116 130 0 0 chrX 175801842 175802127 -1172013 - AluSx SINE Alu -27 285 1 5444 213 49 8 chrX 175802372 175804295 -1169845 - L1PA14 LINE L1 -3138 4446 2451 994 207 4 50 chrX 175804429 175804671 -1169469 - L1PA14 LINE L1 -7350 231 1 1968 131 24 48 chrX 175806808 175807181 -1166959 - THE1B LTR MaLR 0 364 1 11008 106 25 5 chrX 175807181 175808731 -1165409 - THE1B-int LTR MaLR 0 1580 1 1897 149 16 48 chrX 175808731 175809107 -1165033 - THE1B LTR MaLR 0 364 1 261 0 0 0 chrX 175809376 175809405 -1164735 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chrX 175809462 175809483 -1164657 + AT_rich Low_complexity Low_complexity 1 21 0 2374 108 0 0 chrX 175809879 175810184 -1163956 + AluSc SINE Alu 1 305 -4 296 336 8 38 chrX 175810512 175810643 -1163497 + MIR SINE MIR 19 145 -63 18293 35 3 0 chrX 175813081 175815432 -1158708 - L1P1 LINE L1 -2011 4135 1777 10107 28 0 0 chrX 175815431 175816992 -1157148 + L1P1 LINE L1 4131 5691 -464 * 207 0 0 0 chrX 176417275 176417298 -556842 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 271 284 0 0 chrX 176418971 176419038 -555102 + L2 LINE L2 3201 3267 -5 22 35 0 0 chrX 176419438 176419467 -554673 + AT_rich Low_complexity Low_complexity 1 29 0 2245 140 67 45 chrX 176421132 176421357 -552783 - L1MA9 LINE L1 -4 6308 6089 2553 112 27 6 chrX 176421357 176421722 -552418 + THE1C LTR MaLR 2 374 -1 2245 140 67 45 chrX 176421722 176421945 -552195 - L1MA9 LINE L1 -223 6089 5850 1271 231 147 48 chrX 176422207 176422705 -551435 + MLT1H LTR MaLR 1 547 -2 337 209 10 11 chrX 176422981 176423068 -551072 + MLT1J LTR MaLR 63 148 -302 293 305 17 76 chrX 176423194 176423312 -550828 - MIR SINE MIR -140 122 12 531 156 31 0 chrX 176423431 176423527 -550613 - L1MB1 LINE L1 -3 6165 6067 1417 163 18 3 chrX 176423535 176423802 -550338 - L1MB1 LINE L1 -190 5978 5712 279 356 69 0 chrX 176424127 176424228 -549912 + L2 LINE L2 3147 3254 -18 2575 130 18 3 chrX 176424865 176425257 -548883 + L1PB3 LINE L1 5754 6151 -3 191 111 0 0 chrX 176425520 176425547 -548593 - L2 LINE L2 -24 3289 3263 21 0 0 0 chrX 176427144 176427165 -546975 + AT_rich Low_complexity Low_complexity 1 21 0 430 269 0 0 chrX 176427934 176428027 -546113 - MIR SINE MIR -60 148 56 2924 74 14 19 chrX 176428086 176428452 -545688 - THE1B LTR MaLR 0 364 1 379 161 48 13 chrX 176428626 176428711 -545429 - L1ME3 LINE L1 -1 6163 6070 322 290 11 0 chrX 176428872 176428965 -545175 + MER103 DNA DNA 13 106 -60 349 250 31 21 chrX 176429086 176429182 -544958 - L1ME LINE L1 -315 5806 5710 236 297 69 21 chrX 176429444 176429589 -544551 - L1ME LINE L1 -2390 5418 5267 342 0 0 0 chrX 176429961 176429999 -544141 + (TG)n Simple_repeat Simple_repeat 1 38 0 180 77 0 0 chrX 176429998 176430024 -544116 + (CG)n Simple_repeat Simple_repeat 2 27 0 * 814 153 80 25 chrX 176430051 176430214 -543926 + MER5B DNA MER1_type 5 176 -2 486 245 174 0 chrX 176430222 176430377 -543763 - MER5A DNA MER1_type -1 188 7 946 173 22 76 chrX 176430392 176430617 -543523 + MER20 DNA MER1_type 2 214 -5 433 285 134 0 chrX 176431098 176431270 -542870 + MIR SINE MIR 44 238 -24 784 148 0 0 chrX 176431628 176431743 -542397 - L1PB4 LINE L1 -3 6153 6039 2967 79 25 3 chrX 176431795 176432162 -541978 + THE1C LTR MaLR 1 375 0 558 324 37 89 chrX 176432268 176432617 -541523 - L2 LINE L2 -30 3242 2912 180 302 0 0 chrX 176432732 176432785 -541355 - L2 LINE L2 -556 2758 2706 233 125 0 21 chrX 176433925 176433932 -540208 + (GAAA)n Simple_repeat Simple_repeat 2 8 -40 2097 118 13 0 chrX 176433932 176434238 -539902 + AluSx SINE Alu 1 310 -2 233 125 0 21 chrX 176434238 176434278 -539862 + (GAAA)n Simple_repeat Simple_repeat 8 48 0 318 264 73 18 chrX 176434664 176434737 -539403 + MIR3 SINE MIR 81 163 -45 2728 202 79 8 chrX 176434737 176435243 -538897 + MLT1F LTR MaLR 1 542 0 318 264 73 18 chrX 176435243 176435279 -538861 + MIR3 SINE MIR 163 196 -12 209 224 59 59 chrX 176435806 176435891 -538249 + L3 LINE CR1 1492 1576 -1 241 242 155 68 chrX 176436242 176436403 -537737 + MER5B DNA MER1_type 1 175 -3 1881 161 10 7 chrX 176436574 176436873 -537267 + AluJb SINE Alu 1 300 -12 392 107 0 0 chrX 176437128 176437184 -536956 + L1MD2 LINE L1 6282 6337 -22 265 278 0 0 chrX 176437194 176437248 -536892 - MER58 DNA MER1_type -287 54 1 629 267 107 10 chrX 176437444 176437650 -536490 + MIR SINE MIR 37 262 0 607 333 42 62 chrX 176437665 176437811 -536329 + L3 LINE CR1 425 572 -1005 1036 199 5 26 chrX 176437811 176438002 -536138 + MER5A DNA MER1_type 1 187 -2 607 333 42 62 chrX 176438002 176438255 -535885 + L3 LINE CR1 572 816 -761 260 172 17 0 chrX 176439038 176439096 -535044 + (TG)n Simple_repeat Simple_repeat 2 60 0 295 198 136 0 chrX 176440768 176440849 -533291 - MIR SINE MIR -109 153 62 744 217 25 32 chrX 176441306 176441463 -532677 - MER20 DNA MER1_type -50 169 14 286 283 120 0 chrX 176441471 176441563 -532577 - MIR SINE MIR -111 151 49 263 298 194 21 chrX 176441643 176441834 -532306 + L2 LINE L2 3049 3272 0 395 83 17 0 chrX 176442891 176442951 -531189 + (TC)n Simple_repeat Simple_repeat 1 61 0 231 307 118 63 chrX 176443036 176443163 -530977 + L2 LINE L2 3139 3272 0 572 312 34 21 chrX 176443363 176443600 -530540 + MIR SINE MIR 11 250 -12 1178 164 9 32 chrX 176444002 176444221 -529919 - MER20 DNA MER1_type 0 219 6 232 180 16 33 chrX 176445030 176445091 -529049 + L1ME LINE L1 5845 5904 -217 239 279 58 78 chrX 176445124 176445278 -528862 - MIR SINE MIR -1 261 111 1920 172 32 34 chrX 176445650 176446057 -528083 - L1M4 LINE L1 -3096 3050 2645 238 289 26 6 chrX 176446058 176446214 -527926 + (TA)n Simple_repeat Simple_repeat 2 160 0 332 216 11 60 chrX 176446214 176446399 -527741 + (TATATG)n Simple_repeat Simple_repeat 5 180 0 * 346 283 13 0 chrX 176446358 176446517 -527623 + (TA)n Simple_repeat Simple_repeat 1 161 0 735 244 4 9 chrX 176446517 176446742 -527398 - L1M4 LINE L1 -3493 2653 2430 1916 177 68 11 chrX 176447418 176447769 -526371 + MLT1A2 LTR MaLR 4 374 0 189 176 0 0 chrX 176447949 176447983 -526157 + MER5C DNA MER1_type 1 34 -290 275 280 265 10 chrX 176451069 176451269 -522871 + MIR SINE MIR 2 252 -10 227 271 0 0 chrX 176451272 176451320 -522820 + L2 LINE L2 3263 3310 -3 888 250 94 24 chrX 176453268 176453556 -520584 + LTR16B LTR ERVL 2 309 -155 801 199 25 6 chrX 176455314 176455475 -518665 - MIR SINE MIR -42 220 57 201 147 0 0 chrX 176458084 176458118 -516022 + (CA)n Simple_repeat Simple_repeat 1 34 0 255 103 0 0 chrX 176458118 176458157 -515983 + (CAAT)n Simple_repeat Simple_repeat 1 39 0 595 223 90 18 chrX 176460064 176460230 -513910 + MER104 DNA MER2_type 1 178 -2 228 298 71 12 chrX 176460703 176460787 -513353 + MIR SINE MIR 56 144 -64 508 265 48 12 chrX 176460910 176461079 -513061 - MIR SINE MIR -62 146 14 180 0 0 0 chrX 176461329 176461349 -512791 + (T)n Simple_repeat Simple_repeat 1 20 0 25 31 0 0 chrX 176463459 176463491 -510649 + AT_rich Low_complexity Low_complexity 1 32 0 317 371 0 32 chrX 176464233 176464357 -509783 + MIR SINE MIR 1 120 -142 218 250 87 33 chrX 176464468 176464560 -509580 - MIR3 SINE MIR -7 201 105 1444 182 9 0 chrX 176465015 176465235 -508905 + MER58A DNA MER1_type 3 224 0 226 313 50 0 chrX 176465574 176465654 -508486 - MIR SINE MIR -61 201 118 291 209 47 35 chrX 176465857 176465943 -508197 - MER103 DNA DNA -8 158 72 890 248 5 36 chrX 176466064 176466286 -507854 - MIR SINE MIR -1 261 47 297 175 16 48 chrX 176466323 176466386 -507754 + L2 LINE L2 3193 3253 -19 639 248 141 62 chrX 176467138 176467173 -506967 - MIR SINE MIR 0 262 231 2125 108 0 14 chrX 176467173 176467496 -506644 - AluY SINE Alu 0 319 1 639 248 141 62 chrX 176467496 176467701 -506439 - MIR SINE MIR -31 231 2 236 229 181 19 chrX 176470027 176470132 -504008 + MIR SINE MIR 63 184 -78 381 138 0 0 chrX 176473273 176473331 -500809 - MER116 DNA Mariner -1 79 22 1193 240 61 6 chrX 176474554 176474867 -499273 + LTR16C LTR ERVL 160 489 -2 2332 90 0 7 chrX 176475278 176475578 -498562 + AluSx SINE Alu 6 303 -9 281 289 31 10 chrX 176475976 176476073 -498067 - MIR SINE MIR -52 210 112 892 237 69 103 chrX 176476204 176476681 -497459 - MLT1L LTR MaLR -10 605 145 458 259 139 24 chrX 176476802 176476968 -497172 - MIR SINE MIR -70 192 8 536 321 99 25 chrX 176477527 176477851 -496289 + L1ME3A LINE L1 5511 5858 -312 4972 180 24 15 chrX 176479223 176480161 -493979 - L1MB7 LINE L1 -23 6161 5206 2717 87 58 0 chrX 176480161 176480505 -493635 - THE1B LTR MaLR 0 364 1 4972 180 24 15 chrX 176480505 176481105 -493035 - L1MB7 LINE L1 -978 5206 4613 185 318 53 40 chrX 176481118 176481269 -492871 - L2 LINE L2 -733 2581 2429 184 280 0 0 chrX 176481323 176481373 -492767 + MIR SINE MIR 195 244 -18 704 265 152 81 chrX 176482021 176482443 -491697 - LTR16A1 LTR ERVL -1 456 5 2052 98 33 7 chrX 176483009 176483284 -490856 + AluSx SINE Alu 1 282 -30 279 0 0 0 chrX 176483287 176483318 -490822 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 344 220 33 22 chrX 176483447 176483538 -490602 + MLT1J1 LTR MaLR 44 135 -311 658 205 305 4 chrX 176483553 176483802 -490338 + MER5C DNA MER1_type 1 324 0 258 244 378 5 chrX 176483804 176483997 -490143 + MLT1J2 LTR MaLR 145 409 -41 1549 189 89 26 chrX 176484058 176484438 -489702 - MLT1G LTR MaLR -174 416 13 532 232 45 13 chrX 176484640 176484795 -489345 + MER104 DNA Tc2 7 166 -14 7697 189 151 7 chrX 176485010 176486870 -487270 + L1PB1 LINE L1 135 2261 -4602 15243 179 9 18 chrX 176486875 176490625 -483515 + L1PB1 LINE L1 2778 6491 -376 244 73 0 0 chrX 176490637 176490678 -483462 - LTR66 LTR ERVL -170 440 400 * 250 48 48 0 chrX 176490650 176490692 -483448 + LTR66 LTR ERVL 398 441 -169 216 163 0 0 chrX 176490699 176490742 -483398 + (TA)n Simple_repeat Simple_repeat 1 43 0 233 200 0 0 chrX 176490744 176490799 -483341 - L1MC4 LINE L1 -1339 6703 6649 2298 155 8 0 chrX 176490799 176491153 -482987 + L1PB1 LINE L1 6498 6854 -13 36 23 0 0 chrX 176491169 176491212 -482928 + AT_rich Low_complexity Low_complexity 1 43 0 220 304 319 11 chrX 176491322 176491513 -482627 + MIR SINE MIR 7 256 -6 433 356 79 0 chrX 176491872 176492088 -482052 - L2 LINE L2 0 3272 3040 920 241 68 65 chrX 176492088 176492233 -481907 - LTR16C LTR ERVL 0 491 348 1901 152 3 16 chrX 176492233 176492548 -481592 + AluJb SINE Alu 2 312 0 920 241 68 65 chrX 176492548 176492726 -481414 - LTR16C LTR ERVL -143 348 167 1122 141 11 31 chrX 176492763 176492954 -481186 - MER20 DNA MER1_type 0 219 33 210 271 0 43 chrX 176493171 176493241 -480899 + L2 LINE L2 3226 3292 -21 2361 102 3 0 chrX 176493321 176493624 -480516 + AluSq SINE Alu 1 304 -9 358 263 53 32 chrX 176493632 176493727 -480413 - MER91A DNA MER1_type -44 152 56 250 323 0 0 chrX 176494029 176494128 -480012 + CT-rich Low_complexity Low_complexity 3 101 0 953 204 5 10 chrX 176495587 176495783 -478357 + MER58A DNA MER1_type 30 224 0 3168 131 8 23 chrX 176497170 176497644 -476496 + MLT1C LTR MaLR 1 467 0 653 232 52 31 chrX 176498357 176498551 -475589 - MIR SINE MIR -49 213 16 488 177 262 0 chrX 176498553 176498694 -475446 - Charlie4 DNA MER1_type -1783 178 1 445 294 77 14 chrX 176499687 176499830 -474310 - L2 LINE L2 0 3272 3121 617 113 21 0 chrX 176499939 176500036 -474104 + MER21B LTR ERV1 130 228 -635 * 2817 169 54 18 chrX 176500030 176500534 -473606 + MER21B LTR ERV1 341 862 -1 198 0 0 0 chrX 176600735 176600757 -373383 + (T)n Simple_repeat Simple_repeat 1 22 0 6610 30 6 1 chrX 176601727 176602523 -371617 + L1PA7 LINE L1 5355 6154 0 228 35 0 0 chrX 176606210 176606239 -367901 + (A)n Simple_repeat Simple_repeat 1 29 0 696 243 140 0 chrX 176607992 176608206 -365934 - MIR SINE MIR -17 245 2 227 250 23 34 chrX 176609931 176610019 -364121 + CT-rich Low_complexity Low_complexity 4 90 0 371 174 206 45 chrX 176610805 176610960 -363180 - Charlie7 DNA MER1_type 0 2612 2433 25 31 0 0 chrX 176613003 176613035 -361105 + AT_rich Low_complexity Low_complexity 1 32 0 603 228 16 8 chrX 176615820 176615947 -358193 + MER5A DNA MER1_type 55 182 -7 22 0 0 0 chrX 176616195 176616217 -357923 + AT_rich Low_complexity Low_complexity 1 22 0 900 132 0 0 chrX 176616740 176616869 -357271 + FLAM_C SINE Alu 2 130 -13 24 0 0 0 chrX 176617071 176617095 -357045 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chrX 176618153 176618182 -355958 + AT_rich Low_complexity Low_complexity 1 29 0 299 133 0 33 chrX 176620122 176620182 -353958 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 324 278 0 41 chrX 176620182 176620279 -353861 + L1MC4 LINE L1 6611 6703 -1339 183 156 0 0 chrX 176620279 176620311 -353829 + (TA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chrX 176620311 176620342 -353798 + (CA)n Simple_repeat Simple_repeat 2 32 0 249 222 0 0 chrX 176620604 176620658 -353482 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chrX 176622131 176622152 -351988 + AT_rich Low_complexity Low_complexity 1 21 0 330 26 0 0 chrX 176622491 176622530 -351610 + (TG)n Simple_repeat Simple_repeat 2 40 0 1716 151 41 0 chrX 176624178 176624473 -349667 - AluJb SINE Alu 0 306 1 206 174 22 0 chrX 176624792 176624838 -349302 + (TA)n Simple_repeat Simple_repeat 1 47 0 923 247 55 13 chrX 176624902 176625137 -349003 + MIR SINE MIR 18 262 0 2138 106 69 29 chrX 176625772 176626122 -348018 + THE1B LTR MaLR 1 364 0 11706 76 15 2 chrX 176626122 176627667 -346473 + THE1B-int LTR MaLR 1 1565 -15 198 0 0 0 chrX 176628677 176628699 -345441 + (T)n Simple_repeat Simple_repeat 1 22 0 366 313 47 69 chrX 176629534 176629767 -344373 + L1M2 LINE L1 836 1063 -5786 255 133 0 0 chrX 176630009 176630054 -344086 + (TCC)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chrX 176630487 176630511 -343629 + GC_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chrX 176631693 176631729 -342411 + GC_rich Low_complexity Low_complexity 1 36 0 437 0 0 19 chrX 176632690 176632744 -341396 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 184 331 25 58 chrX 176632862 176632983 -341157 - L3b LINE CR1 -93 1490 1374 221 254 55 0 chrX 176633289 176633344 -340796 - MIR3 SINE MIR -13 195 138 2311 73 73 6 chrX 176633965 176634307 -339833 - L1MA1 LINE L1 0 6302 5938 1552 181 118 21 chrX 176634382 176634713 -339427 - MLT1A1 LTR MaLR -1 364 2 255 284 114 23 chrX 176634819 176634907 -339233 + L2 LINE L2 3139 3234 -38 1594 138 69 12 chrX 176635657 176635977 -338163 - L1MB8 LINE L1 0 6178 5841 207 100 0 0 chrX 176636362 176636392 -337748 + (TG)n Simple_repeat Simple_repeat 2 31 0 409 287 143 22 chrX 176636441 176636671 -337469 + MIR SINE MIR 2 259 -3 816 189 20 7 chrX 176636773 176636921 -337219 + MER5A DNA MER1_type 40 189 0 451 328 62 31 chrX 176637254 176637513 -336627 + L3 LINE CR1 1084 1350 -227 639 287 71 84 chrX 176637662 176638125 -336015 + LTR16C LTR ERVL 3 459 -32 507 222 53 41 chrX 176638870 176639041 -335099 + MER5A DNA MER1_type 3 175 -14 367 273 31 72 chrX 176639059 176639253 -334887 - MER5A DNA MER1_type -2 187 2 379 275 0 80 chrX 176639267 176639405 -334735 - L2 LINE L2 0 3313 3187 297 0 0 0 chrX 176641189 176641222 -332918 + (TG)n Simple_repeat Simple_repeat 1 33 0 4970 145 39 10 chrX 176641236 176642370 -331770 - L1MB3 LINE L1 -31 6152 4985 1091 145 5 38 chrX 176642370 176642556 -331584 - AluJb SINE Alu -8 304 125 371 209 0 0 chrX 176642556 176642623 -331517 - L1MB3 LINE L1 -1171 4975 4909 2674 40 9 0 chrX 176642637 176642964 -331176 - L1PA4 LINE L1 -5 6150 5821 923 43 0 0 chrX 176642964 176643079 -331061 + L1P LINE L1 5313 5427 -728 1838 215 33 7 chrX 176643081 176643541 -330599 - L1MB3 LINE L1 -1227 4919 4448 3207 176 43 18 chrX 176643910 176644277 -329863 - L1PB4 LINE L1 -3 6153 5760 315 0 0 0 chrX 176644277 176644312 -329828 + (TA)n Simple_repeat Simple_repeat 1 35 0 3207 176 43 18 chrX 176644312 176644621 -329519 - L1PB4 LINE L1 -396 5760 5460 744 202 30 10 chrX 176644621 176644819 -329321 - L1PB4 LINE L1 -1645 4501 4300 23 0 0 0 chrX 176644977 176645000 -329140 + AT_rich Low_complexity Low_complexity 1 23 0 405 320 45 23 chrX 176645189 176645498 -328642 - L1ME4a LINE L1 -162 5959 5644 219 297 123 64 chrX 176646647 176646866 -327274 - L3 LINE CR1 -10 1567 1336 257 224 57 130 chrX 176646902 176647029 -327111 + L2 LINE L2 2150 2260 -1054 1825 118 42 28 chrX 176647029 176647317 -326823 - AluSx SINE Alu -16 296 5 257 224 57 130 chrX 176647317 176647381 -326759 + L2 LINE L2 2260 2327 -987 2224 89 0 3 chrX 176647457 176647748 -326392 + THE1B LTR MaLR 3 292 -72 23 0 0 0 chrX 176649883 176649906 -324234 + AT_rich Low_complexity Low_complexity 1 23 0 180 375 69 0 chrX 176650076 176650148 -323992 + MIR SINE MIR 27 103 -105 384 272 0 39 chrX 176650191 176650294 -323846 - MIR SINE MIR -4 258 160 200 281 16 16 chrX 176650619 176650683 -323457 + MIR SINE MIR 184 247 -15 21 36 0 0 chrX 176651369 176651397 -322743 + AT_rich Low_complexity Low_complexity 1 28 0 1893 161 0 13 chrX 176654851 176655150 -318990 + AluJo SINE Alu 1 295 -17 24 53 0 0 chrX 176658146 176658184 -315956 + AT_rich Low_complexity Low_complexity 1 38 0 205 332 180 40 chrX 176658571 176658893 -315247 + L2 LINE L2 2841 3207 -65 859 169 20 90 chrX 176659009 176659210 -314930 + MER5A DNA MER1_type 1 187 -2 216 0 0 0 chrX 176659562 176659586 -314554 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 406 318 41 0 chrX 176659681 176659831 -314309 + MIR SINE MIR 34 188 -63 191 288 0 0 chrX 176660300 176660359 -313781 - L3 LINE CR1 -146 1431 1373 661 179 0 0 chrX 176660363 176660469 -313671 + FLAM_C SINE Alu 3 108 -35 261 296 70 17 chrX 176660947 176661119 -313021 - L1ME LINE L1 -359 5762 5582 5119 207 53 20 chrX 176662726 176663831 -310309 - L1MDa LINE L1 -5377 1163 22 491 343 59 11 chrX 176663848 176664197 -309943 + L2 LINE L2 2702 3069 -203 303 67 33 17 chrX 176664277 176664337 -309803 + (TA)n Simple_repeat Simple_repeat 2 62 0 442 321 11 0 chrX 176665383 176665567 -308573 - L1ME LINE L1 -1250 4896 4711 26 30 0 0 chrX 176665728 176665761 -308379 + AT_rich Low_complexity Low_complexity 1 33 0 30 59 0 0 chrX 176666011 176666062 -308078 + AT_rich Low_complexity Low_complexity 1 51 0 201 151 0 192 chrX 176666151 176666224 -307916 + MER91 DNA MER1_type 82 140 0 228 291 241 22 chrX 176666339 176666547 -307593 + MIR SINE MIR 10 262 0 227 216 98 0 chrX 176667845 176667896 -306244 - L2 LINE L2 0 3313 3258 701 319 39 12 chrX 176668349 176668603 -305537 - MIR SINE MIR 0 262 2 2508 83 18 33 chrX 176670479 176670877 -303263 - L1MA5 LINE L1 -5 6295 5904 277 362 19 0 chrX 176671554 176671659 -302481 + MIR3 SINE MIR 62 168 -40 24483 43 1 35 chrX 176671815 176674991 -299149 - L1P LINE L1 -3079 3067 1 9682 180 30 7 chrX 176674983 176675373 -298767 - L1MA3 LINE L1 -442 6514 6134 * 2274 127 8 8 chrX 176675373 176675728 -298412 - THE1A LTR MaLR 0 355 1 9682 180 30 7 chrX 176675728 176676905 -297235 - L1MA3 LINE L1 -822 6134 4871 447 19 0 0 chrX 176676905 176676957 -297183 + (TG)n Simple_repeat Simple_repeat 2 53 0 9682 180 30 7 chrX 176676957 176677912 -296228 - L1MA3 LINE L1 -2085 4871 3940 5347 139 32 0 chrX 176677923 176678835 -295305 - L1PA13 LINE L1 -11 6152 5235 847 92 92 0 chrX 176678835 176678965 -295175 + MSTA LTR MaLR 1 142 -286 8728 170 13 7 chrX 176678966 176679111 -295029 - L1PA13 LINE L1 -1107 5039 4896 6624 113 31 18 chrX 176679111 176680168 -293972 - MER11C LTR ERVK 0 1071 1 8728 170 13 7 chrX 176680168 176681680 -292460 - L1PA13 LINE L1 -1250 4896 3371 3078 222 12 1 chrX 176681782 176682549 -291591 - L1PA13 LINE L1 -3068 3078 2304 7801 47 0 0 chrX 176682563 176683545 -290595 + L1P LINE L1 958 1939 -4207 677 329 20 14 chrX 176683645 176684140 -290000 + L1P LINE L1 1585 2082 -4064 11021 200 68 10 chrX 176684140 176686786 -287354 - L1MA3 LINE L1 -3826 2971 165 4557 197 39 17 chrX 176686783 176688012 -286128 - L1 LINE L1 -2839 4726 3458 * 378 0 0 0 chrX 176688012 176688054 -286086 + (TTCC)n Simple_repeat Simple_repeat 3 44 0 4557 197 39 17 chrX 176688054 176688177 -285963 - L1 LINE L1 -4107 3458 3339 476 206 20 20 chrX 176688173 176688275 -285865 + L1MCa LINE L1 510 611 -5815 * 4223 230 77 20 chrX 176688285 176690563 -283577 + L1MCb LINE L1 500 2973 -3591 1945 259 31 7 chrX 176690573 176691183 -282957 + L1M4 LINE L1 4518 5142 -1004 18028 35 5 2 chrX 176691287 176694238 -279902 + L1PA3 LINE L1 3196 6152 -3 2607 126 22 7 chrX 176694245 176694704 -279436 + L1MA3 LINE L1 5840 6305 0 1113 275 85 23 chrX 176694717 176695190 -278950 - L1MCa LINE L1 -5899 527 26 2928 227 59 21 chrX 176695224 176695676 -278464 - L1MDb LINE L1 -3946 2594 2161 1887 138 0 24 chrX 176695676 176695992 -278148 + AluSx SINE Alu 1 309 0 2928 227 59 21 chrX 176695992 176696498 -277642 - L1MDb LINE L1 -4379 2161 1598 22872 169 29 29 chrX 176696527 176697257 -276883 + L1PA11 LINE L1 7 736 -6876 1818 131 4 4 chrX 176697257 176697517 -276623 - AluSc SINE Alu -49 260 1 22872 169 29 29 chrX 176697517 176700331 -273809 + L1PA11 LINE L1 736 3550 -4062 315 0 0 0 chrX 176700331 176700366 -273774 + (CA)n Simple_repeat Simple_repeat 2 36 0 22872 169 29 29 chrX 176700366 176702859 -271281 + L1PA11 LINE L1 3550 7124 -488 2147 122 0 0 chrX 176702859 176703154 -270986 + AluSx SINE Alu 3 297 -15 22872 169 29 29 chrX 176703154 176703643 -270497 + L1PA11 LINE L1 7124 7612 0 703 213 147 58 chrX 176703646 176703871 -270269 - MER76 LTR ERV -443 245 1 1833 210 40 38 chrX 176703920 176704517 -269623 - L1MDb LINE L1 -4987 1556 992 337 320 137 94 chrX 176704540 176704955 -269185 - L1MDb LINE L1 -5551 989 557 1002 268 32 42 chrX 176705362 176705765 -268375 - L1MDb LINE L1 -6128 412 14 6067 62 5 14 chrX 176705820 176706376 -267764 - L1PA8 LINE L1 -136 6036 5490 2316 91 3 7 chrX 176706376 176706684 -267456 - AluSc SINE Alu -2 307 1 6067 62 5 14 chrX 176706684 176706996 -267144 - L1PA8 LINE L1 -682 5490 5177 * 6224 88 2 79 chrX 176706995 176708042 -266098 + L1PA8 LINE L1 4215 5180 -966 249 256 124 73 chrX 176708269 176708503 -265637 + MARNA DNA Mariner 133 378 -208 244 298 106 19 chrX 176708591 176708695 -265445 - MIR SINE MIR -70 192 80 22 0 0 0 chrX 176710033 176710055 -264085 + AT_rich Low_complexity Low_complexity 1 22 0 1754 152 9 67 chrX 176710055 176710371 -263769 + AluJo SINE Alu 1 298 -14 1976 168 117 9 chrX 176710752 176711309 -262831 - L1MDa LINE L1 -3890 2650 2173 1845 144 14 7 chrX 176713195 176713479 -260661 + AluJo SINE Alu 6 291 -21 21 0 0 0 chrX 176721974 176721995 -252145 + AT_rich Low_complexity Low_complexity 1 21 0 310 41 20 20 chrX 176722869 176722918 -251222 + (TTG)n Simple_repeat Simple_repeat 2 50 0 24 53 0 0 chrX 176723249 176723287 -250853 + AT_rich Low_complexity Low_complexity 1 38 0 231 146 0 0 chrX 176725767 176725808 -248332 + (CA)n Simple_repeat Simple_repeat 2 42 0 353 286 26 71 chrX 176727642 176727796 -246344 + MIR SINE MIR 4 150 -112 195 184 0 0 chrX 176729430 176729468 -244672 - L2 LINE L2 0 3313 3276 15262 179 32 17 chrX 176729888 176734612 -239528 - L1MA5 LINE L1 -10 6992 2159 1797 223 58 63 chrX 176734612 176735169 -238971 - MLT2B3 LTR ERVL 0 554 1 15262 179 32 17 chrX 176735169 176735857 -238283 - L1MA5 LINE L1 -4843 2159 1483 22 35 0 0 chrX 176736009 176736038 -238102 + AT_rich Low_complexity Low_complexity 1 29 0 2356 72 0 3 chrX 176737078 176737370 -236770 - AluSc SINE Alu -18 291 1 995 208 40 0 chrX 176737548 176737750 -236390 + MER6B DNA MER2_type 1 210 0 846 224 78 41 chrX 176737751 176737970 -236170 - MIR SINE MIR -10 252 32 469 256 143 25 chrX 176738316 176738519 -235621 + MIR SINE MIR 2 228 -34 635 266 58 34 chrX 176739689 176739896 -234244 + MIR SINE MIR 13 224 -38 1238 133 0 0 chrX 176739899 176740079 -234061 - AluSg/x SINE Alu 0 309 130 24 0 0 0 chrX 176740545 176740569 -233571 + AT_rich Low_complexity Low_complexity 1 24 0 31522 86 10 17 chrX 176740676 176746838 -227302 + L1PA7 LINE L1 1 6134 -335 1916 131 21 3 chrX 176746838 176747129 -227011 + AluSx SINE Alu 2 297 -15 31522 86 10 17 chrX 176747129 176747462 -226678 + L1PA7 LINE L1 6134 6468 -1 955 178 112 0 chrX 176747664 176747861 -226279 + MER20 DNA MER1_type 1 219 0 281 270 131 7 chrX 176748340 176748477 -225663 - MER103 DNA DNA -1 165 12 239 349 177 17 chrX 176748893 176749125 -225015 + L3 LINE CR1 120 388 -1189 5951 87 10 22 chrX 176750419 176751285 -222855 - L1PA13 LINE L1 -4 6159 5304 240 281 0 16 chrX 176752146 176752210 -221930 + GA-rich Low_complexity Low_complexity 3 65 0 465 350 62 15 chrX 176752307 176752581 -221559 - L2 LINE L2 -22 3291 3005 1808 224 45 23 chrX 176752606 176753093 -221047 - L2 LINE L2 -1264 2050 1553 25 51 0 0 chrX 176754444 176754483 -219657 + AT_rich Low_complexity Low_complexity 1 39 0 3884 108 36 0 chrX 176755223 176755800 -218340 - LTR43 LTR ERV1 -4 598 1 758 215 252 28 chrX 176756098 176756419 -217721 - L2 LINE L2 -2263 1051 659 640 260 98 20 chrX 176756418 176756622 -217518 + MIR SINE MIR 42 261 -1 * 265 241 0 0 chrX 176756679 176756733 -217407 - L2 LINE L2 -5 3308 3255 21 0 0 0 chrX 176757262 176757283 -216857 + AT_rich Low_complexity Low_complexity 1 21 0 225 238 0 48 chrX 176758985 176759048 -215092 - MER5A DNA MER1_type -123 66 7 576 88 0 0 chrX 176759164 176759244 -214896 - MADE1 DNA Mariner 0 80 1 379 239 184 18 chrX 176761465 176761574 -212566 + L1ME LINE L1 5541 5667 -454 363 293 102 81 chrX 176763116 176763488 -210652 + L2 LINE L2 2934 3313 0 428 0 19 0 chrX 176763872 176763924 -210216 + (TG)n Simple_repeat Simple_repeat 2 54 0 1887 160 0 0 chrX 176764088 176764376 -209764 + AluJb SINE Alu 1 288 -24 24 32 0 0 chrX 176764714 176764745 -209395 + AT_rich Low_complexity Low_complexity 1 31 0 486 247 139 30 chrX 176764771 176764937 -209203 - MIR SINE MIR -43 219 36 11196 108 170 3 chrX 176765058 176765293 -208847 - Tigger1 DNA MER2_type 0 2418 2224 207 0 0 0 chrX 176765293 176765316 -208824 + (TTA)n Simple_repeat Simple_repeat 2 24 0 11196 108 170 3 chrX 176765316 176766918 -207222 - Tigger1 DNA MER2_type -194 2224 274 1431 58 0 5 chrX 176766914 176767102 -207038 - Tigger1 DNA MER2_type -1562 856 670 * 990 62 0 0 chrX 176767115 176767243 -206897 - Tigger1 DNA MER2_type -1335 1083 956 1607 143 23 0 chrX 176767244 176767509 -206631 - Tigger1 DNA MER2_type -2146 272 2 568 307 119 14 chrX 176767534 176767752 -206388 - MIR SINE MIR -2 260 20 2521 109 13 13 chrX 176768530 176768905 -205235 - THE1C LTR MaLR 0 375 1 11025 96 30 1 chrX 176768905 176770440 -203700 - THE1C-int LTR MaLR 0 1580 1 2425 116 33 0 chrX 176770440 176770803 -203337 - THE1C LTR MaLR 0 375 1 21 0 0 0 chrX 176771405 176771426 -202714 + AT_rich Low_complexity Low_complexity 1 21 0 878 264 96 41 chrX 176771557 176771944 -202196 + L1MEc LINE L1 17 424 -6116 2821 234 118 12 chrX 176771946 176772925 -201215 + L1M4 LINE L1 2407 3488 -2658 24 53 0 0 chrX 176773453 176773491 -200649 + AT_rich Low_complexity Low_complexity 1 38 0 222 344 16 8 chrX 176774578 176774706 -199434 + MIR SINE MIR 107 235 -27 1119 278 150 22 chrX 176774932 176775378 -198762 - MLT2F LTR ERVL -158 505 3 21 0 0 0 chrX 176776276 176776297 -197843 + AT_rich Low_complexity Low_complexity 1 21 0 462 295 14 14 chrX 176777348 176777487 -196653 - MIR3 SINE MIR -43 165 27 799 227 37 28 chrX 176777536 176777752 -196388 - L2 LINE L2 -609 2705 2488 315 255 157 0 chrX 176777812 176777914 -196226 - L2 LINE L2 0 3313 3196 652 219 57 72 chrX 176778572 176778837 -195303 + MIR SINE MIR 2 262 0 1976 251 46 97 chrX 176780421 176781043 -193097 - L2 LINE L2 0 3313 2776 1838 153 10 3 chrX 176781043 176781331 -192809 + AluJb SINE Alu 1 290 -22 1976 251 46 97 chrX 176781331 176781751 -192389 - L2 LINE L2 -537 2776 2336 326 265 152 39 chrX 176782800 176783030 -191110 + L1MEc LINE L1 1300 1555 -4975 517 252 126 35 chrX 176783097 176783421 -190719 + L1MEc LINE L1 1726 2043 -860 1712 228 62 39 chrX 176783897 176784442 -189698 - MER68 LTR ERV1 -4 558 1 23 33 0 0 chrX 176784568 176784598 -189542 + AT_rich Low_complexity Low_complexity 1 30 0 773 314 216 9 chrX 176785691 176786233 -187907 - L2 LINE L2 -2078 1236 583 441 223 128 34 chrX 176788240 176788379 -185761 + MIR SINE MIR 98 255 -7 1916 123 47 0 chrX 176788380 176788656 -185484 + AluJb SINE Alu 1 289 -23 22 56 0 0 chrX 176789228 176789264 -184876 + AT_rich Low_complexity Low_complexity 1 36 0 4517 111 8 1 chrX 176789904 176790564 -183576 + L1PA14 LINE L1 5494 6157 -4 478 266 69 26 chrX 176792194 176792378 -181762 + MIR SINE MIR 2 191 -17 * 665 270 35 15 chrX 176792361 176792561 -181579 + MIR SINE MIR 57 260 -2 25 0 0 0 chrX 176793573 176793598 -180542 + AT_rich Low_complexity Low_complexity 1 25 0 38 61 0 0 chrX 176793866 176793932 -180208 + AT_rich Low_complexity Low_complexity 1 66 0 248 238 0 12 chrX 176794084 176794164 -179976 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 530 240 114 65 chrX 176794694 176794940 -179200 + L2 LINE L2 3048 3305 -8 357 302 52 10 chrX 176795222 176795318 -178822 + L2 LINE L2 3168 3267 -5 2107 101 7 7 chrX 176795406 176795421 -178719 - AluSx SINE Alu -16 296 282 405 0 0 0 chrX 176795421 176795466 -178674 + (TG)n Simple_repeat Simple_repeat 1 45 0 2107 101 7 7 chrX 176795466 176795746 -178394 - AluSx SINE Alu -29 283 1 258 56 0 0 chrX 176798203 176798239 -175901 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1464 145 24 79 chrX 176798246 176798536 -175604 - AluJb SINE Alu -38 274 1 321 231 62 0 chrX 176798637 176798702 -175438 - MER58 DNA MER1_type 0 2420 2352 1792 37 0 0 chrX 176800336 176800553 -173587 + L1PA5 LINE L1 5931 6147 -7 597 276 80 36 chrX 176801077 176801302 -172838 - MIR SINE MIR -8 254 20 276 274 150 9 chrX 176803490 176803603 -170537 - MER94 DNA DNA 0 134 6 2193 95 0 0 chrX 176803603 176803909 -170231 + AluSx SINE Alu 1 306 0 291 93 0 0 chrX 176805629 176805672 -168468 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2192 107 7 0 chrX 176809751 176810050 -164090 + AluSx SINE Alu 12 312 0 215 59 0 29 chrX 176810076 176810110 -164030 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 255 270 101 0 chrX 176810822 176810911 -163229 - MLT1L LTR MaLR -52 563 466 537 304 72 13 chrX 176810942 176811179 -162961 - MLT1L LTR MaLR -250 365 115 644 267 42 50 chrX 176811469 176811709 -162431 + MIR SINE MIR 15 252 -10 375 192 26 0 chrX 176811898 176811976 -162164 - MER116 DNA Mariner 0 80 1 561 282 92 34 chrX 176812151 176812413 -161727 + L2 LINE L2 3005 3281 -32 189 74 0 0 chrX 176812425 176812452 -161688 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chrX 176815083 176815106 -159034 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chrX 176815694 176815716 -158424 + AT_rich Low_complexity Low_complexity 1 22 0 428 324 104 23 chrX 176816539 176816798 -157342 - L3 LINE CR1 -6 1571 1292 * 586 327 178 7 chrX 176816794 176817069 -157071 + L3 LINE CR1 1253 1574 -3 662 313 167 43 chrX 176817206 176817917 -156223 - L3 LINE CR1 -404 1173 324 21 0 0 0 chrX 176818920 176818941 -155199 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chrX 176819909 176819945 -154195 + AT_rich Low_complexity Low_complexity 1 36 0 812 102 0 0 chrX 176820580 176820698 -153442 - AluSx SINE Alu -1 309 192 870 112 104 0 chrX 176820699 176820824 -153316 - AluSx SINE Alu -171 141 4 24 32 0 0 chrX 176821590 176821621 -152519 + AT_rich Low_complexity Low_complexity 1 31 0 245 313 121 20 chrX 176822225 176822324 -151816 - L2 LINE L2 -210 3062 2954 207 0 0 0 chrX 176822325 176822348 -151792 + (A)n Simple_repeat Simple_repeat 1 23 0 272 304 56 40 chrX 176822528 176822653 -151487 - L2 LINE L2 -618 2696 2570 1775 123 57 65 chrX 176823249 176823291 -150849 - THE1B LTR MaLR 0 364 323 2294 71 0 24 chrX 176823291 176823588 -150552 + AluY SINE Alu 1 290 -21 1775 123 57 65 chrX 176823588 176823912 -150228 - THE1B LTR MaLR -41 323 1 25 31 0 0 chrX 176824328 176824360 -149780 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chrX 176824505 176824534 -149606 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chrX 176825135 176825156 -148984 + AT_rich Low_complexity Low_complexity 1 21 0 366 281 70 76 chrX 176825904 176826075 -148065 - MIR3 SINE MIR -1 207 38 275 368 116 12 chrX 176826278 176826536 -147604 + L2 LINE L2 2988 3272 0 504 268 6 32 chrX 176827130 176827309 -146831 - MIR SINE MIR -66 196 25 560 218 89 50 chrX 176827313 176827492 -146648 - MER5A DNA MER1_type -2 187 2 23 0 0 0 chrX 176828770 176828793 -145347 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chrX 176828933 176828960 -145180 + AT_rich Low_complexity Low_complexity 1 27 0 2142 169 0 0 chrX 176829555 176829903 -144237 + MER7A DNA MER2_type 1 346 0 1246 231 16 13 chrX 176829947 176830259 -143881 - AluSq SINE Alu 0 313 1 2321 99 3 0 chrX 176830435 176830747 -143393 - AluSq SINE Alu 0 313 1 839 234 140 9 chrX 176830856 176831078 -143062 - MIR SINE MIR -4 258 8 3966 99 32 3 chrX 176831297 176831882 -142258 + LTR43 LTR ERV1 1 602 0 237 327 58 0 chrX 176834130 176834234 -139906 - MIR3 SINE MIR -6 202 93 24 32 0 0 chrX 176835110 176835141 -138999 + AT_rich Low_complexity Low_complexity 1 31 0 213 109 65 0 chrX 176835266 176835312 -138828 + A-rich Low_complexity Low_complexity 2 50 0 190 191 0 21 chrX 176836461 176836508 -137632 + L2 LINE L2 3267 3312 -1 4636 73 2 2 chrX 176836914 176837514 -136626 - MER4A LTR ERV1 0 600 1 394 316 61 40 chrX 176837748 176837976 -136164 + MIR SINE MIR 20 252 -10 780 193 112 6 chrX 176838259 176838420 -135720 + MER45A DNA AcHobo 1 178 0 200 294 165 12 chrX 176839054 176839139 -135001 - L2 LINE L2 -20 3252 3155 29 0 0 0 chrX 176839455 176839484 -134656 + AT_rich Low_complexity Low_complexity 1 29 0 449 254 189 6 chrX 176839591 176839760 -134380 - MIR SINE MIR -13 249 50 1860 108 48 0 chrX 176840125 176840394 -133746 - AluSx SINE Alu -30 282 1 22 56 0 0 chrX 176840401 176840437 -133703 + AT_rich Low_complexity Low_complexity 1 36 0 255 170 0 0 chrX 176840767 176840814 -133326 + (CATA)n Simple_repeat Simple_repeat 4 50 0 2189 94 0 3 chrX 176841059 176841346 -132794 - AluSg SINE Alu -24 286 1 26 50 0 0 chrX 176841856 176841896 -132244 + AT_rich Low_complexity Low_complexity 1 40 0 1981 129 0 4 chrX 176841918 176842238 -131902 - AluSg SINE Alu 0 319 1 22 35 0 0 chrX 176842565 176842594 -131546 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chrX 176842631 176842654 -131486 + (TA)n Simple_repeat Simple_repeat 2 24 0 3544 49 0 53 chrX 176842654 176843135 -131005 - L1PA5 LINE L1 -8 6146 5690 23 0 0 0 chrX 176843241 176843264 -130876 + AT_rich Low_complexity Low_complexity 1 23 0 261 303 174 32 chrX 176843781 176843936 -130204 - MIR3 SINE MIR -11 197 21 2146 175 101 93 chrX 176844151 176844798 -129342 - MLT1E1 LTR MaLR 0 654 3 606 242 124 17 chrX 176844904 176845082 -129058 + MIR SINE MIR 2 198 -64 * 1106 253 12 4 chrX 176845075 176845328 -128812 - MIR SINE MIR 0 262 8 688 223 81 14 chrX 176846045 176846271 -127869 + LTR41 LTR ERVL 1 259 -536 324 204 48 39 chrX 176846623 176846726 -127414 + LTR41 LTR ERVL 655 758 -15 2379 164 40 49 chrX 176846784 176847339 -126801 + L1PB4 LINE L1 5601 6150 -6 229 345 12 24 chrX 176847528 176847612 -126528 - MIR3 SINE MIR -123 85 3 203 173 19 39 chrX 176848807 176848859 -125281 + A-rich Low_complexity Low_complexity 4 54 0 1208 115 139 10 chrX 176850260 176850469 -123671 + MER46A DNA MER2_type 1 236 0 1528 116 4 24 chrX 176850913 176851164 -122976 - L1MA3 LINE L1 -13 6292 6047 491 330 91 41 chrX 176851676 176851994 -122146 + LTR16C LTR ERVL 156 489 -2 2458 59 0 10 chrX 176852201 176852504 -121636 + AluY SINE Alu 1 300 -11 318 264 132 52 chrX 176852604 176852778 -121362 - MIR SINE MIR -64 198 11 42 48 0 0 chrX 176853223 176853286 -120854 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chrX 176853388 176853412 -120728 + AT_rich Low_complexity Low_complexity 1 24 0 180 316 13 13 chrX 176854282 176854358 -119782 + MIR SINE MIR 180 255 -7 22 0 0 0 chrX 176855187 176855209 -118931 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chrX 176855531 176855573 -118567 + AT_rich Low_complexity Low_complexity 1 42 0 319 288 72 46 chrX 176856155 176856308 -117832 + MIR SINE MIR 106 262 0 2221 99 7 3 chrX 176856318 176856621 -117519 - AluSp SINE Alu -9 304 1 24 0 0 0 chrX 176856657 176856681 -117459 + AT_rich Low_complexity Low_complexity 1 24 0 820 234 68 112 chrX 176857494 176857917 -116223 + L1MC4 LINE L1 6645 7038 -957 23 54 0 0 chrX 176857956 176857993 -116147 + AT_rich Low_complexity Low_complexity 1 37 0 33 25 0 0 chrX 176858230 176858270 -115870 + AT_rich Low_complexity Low_complexity 1 40 0 37 81 0 0 chrX 176858541 176858627 -115513 + AT_rich Low_complexity Low_complexity 1 86 0 263 300 118 64 chrX 176858891 176859001 -115139 - MER5A DNA MER1_type -1 188 73 2292 114 0 0 chrX 176859365 176859671 -114469 + AluSx SINE Alu 1 306 -6 225 261 0 0 chrX 176860830 176860876 -113264 + polypyrimidine Low_complexity Low_complexity 3 48 0 4519 193 17 20 chrX 176861750 176862640 -111500 + L1MA2 LINE L1 65 951 -6614 10506 145 22 13 chrX 176862643 176863244 -110896 + L1MA2 LINE L1 4784 5378 -2345 2120 93 24 7 chrX 176863244 176863535 -110605 + AluSc SINE Alu 1 296 -13 10506 145 22 13 chrX 176863535 176865838 -108302 + L1MA2 LINE L1 5378 7717 -6 191 275 62 0 chrX 176865874 176865954 -108186 - L2 LINE L2 -833 2481 2397 2205 108 0 7 chrX 176866926 176867231 -106909 + AluSx SINE Alu 1 303 -9 1806 93 36 4 chrX 176867362 176867641 -106499 + L1PA13 LINE L1 5875 6162 -1 920 185 38 52 chrX 176867891 176868102 -106038 + MER3 DNA MER1_type 2 209 0 5938 146 17 25 chrX 176868987 176870196 -103944 + L1MA9 LINE L1 5111 6312 0 21 0 0 0 chrX 176870895 176870916 -103224 + AT_rich Low_complexity Low_complexity 1 21 0 358 372 58 6 chrX 176871284 176871456 -102684 + MIR SINE MIR 32 212 -50 420 316 93 0 chrX 176871683 176871822 -102318 - L2 LINE L2 0 3272 3121 2248 118 120 5 chrX 176872216 176872599 -101541 + MSTA LTR MaLR 2 428 0 210 333 34 41 chrX 176872676 176872823 -101317 - L2 LINE L2 -452 2862 2717 603 0 0 0 chrX 176873429 176873496 -100644 + (TAAAA)n Simple_repeat Simple_repeat 2 68 0 2126 99 0 11 chrX 176873858 176874140 -100000 + AluSg SINE Alu 1 279 -31 210 37 0 0 chrX 176874156 176874183 -99957 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 4727 32 0 0 chrX 176874391 176874947 -99193 - L1PA3 LINE L1 -3 6152 5597 185 62 0 31 chrX 176876162 176876194 -97946 + (CA)n Simple_repeat Simple_repeat 1 31 0 1510 250 18 9 chrX 176876355 176876691 -97449 + MLT1I LTR MaLR 71 409 0 2287 97 3 0 chrX 176876925 176877225 -96915 - AluSx SINE Alu -11 301 1 309 87 0 0 chrX 176877494 176877540 -96600 - MADE1 DNA Mariner 0 80 35 344 85 0 0 chrX 176877614 176877661 -96479 - MADE1 DNA Mariner -33 47 1 189 287 38 96 chrX 176878036 176878193 -95947 - MER5A DNA MER1_type -41 148 1 496 294 13 20 chrX 176878256 176878409 -95731 - MER5B DNA MER1_type 0 178 27 229 244 39 51 chrX 176878700 176878778 -95362 + MIR SINE MIR 107 183 -79 243 229 0 0 chrX 176878908 176878956 -95184 + L1ME1 LINE L1 5594 5641 -529 358 226 46 56 chrX 176878981 176879182 -94958 + L1ME1 LINE L1 5739 5951 -219 4786 127 17 1 chrX 176880185 176880942 -93198 + L1MA5 LINE L1 5532 6300 0 415 304 123 26 chrX 176881638 176881865 -92275 - MIR SINE MIR -12 250 2 22 70 0 0 chrX 176882294 176882337 -91803 + AT_rich Low_complexity Low_complexity 1 43 0 208 26 26 53 chrX 176883069 176883107 -91033 + (TTTTA)n Simple_repeat Simple_repeat 1 37 0 2861 104 27 5 chrX 176883107 176883533 -90607 - L1PA15 LINE L1 -26 6139 5706 313 204 62 93 chrX 176884716 176884878 -89262 - L1ME4a LINE L1 -1 6120 5964 259 286 13 0 chrX 176885090 176885167 -88973 + Charlie8 DNA MER1_type 2340 2417 0 1020 218 10 15 chrX 176885948 176886150 -87990 - MIR SINE MIR 0 262 62 1072 225 131 74 chrX 176886182 176887339 -86801 - L1M4 LINE L1 -2343 3803 2445 2023 103 28 7 chrX 176887849 176888140 -86000 + MER7A DNA MER2_type 1 295 -51 383 239 8 31 chrX 176888378 176888508 -85632 + L1ME1 LINE L1 6037 6163 -3 2052 80 8 0 chrX 176888565 176888828 -85312 + AluSg SINE Alu 36 300 -10 207 0 0 0 chrX 176889006 176889029 -85111 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chrX 176889529 176889552 -84588 + (CAAAAA)n Simple_repeat Simple_repeat 6 28 0 266 196 304 29 chrX 176891286 176891388 -82752 + MIR SINE MIR 75 204 -58 21 36 0 0 chrX 176892240 176892268 -81872 + AT_rich Low_complexity Low_complexity 1 28 0 378 0 0 0 chrX 176892552 176892594 -81546 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chrX 176893130 176893165 -80975 + AT_rich Low_complexity Low_complexity 1 35 0 386 271 68 17 chrX 176893676 176893794 -80346 - L2 LINE L2 -1 3271 3148 1853 166 7 0 chrX 176896325 176896626 -77514 - AluJo SINE Alu -9 303 1 21 36 0 0 chrX 176897598 176897626 -76514 + AT_rich Low_complexity Low_complexity 1 28 0 212 434 24 0 chrX 176898015 176898181 -75959 - L2 LINE L2 -1 3271 3102 404 358 128 23 chrX 176898184 176898536 -75604 + L2 LINE L2 2836 3224 -48 289 343 198 24 chrX 176900947 176901195 -72945 - L2 LINE L2 -1368 1946 1656 218 304 0 0 chrX 176901498 176901554 -72586 - L2 LINE L2 -36 3236 3181 905 168 7 0 chrX 176901571 176901720 -72420 - MER2 DNA MER2_type -174 171 22 302 306 81 32 chrX 176902095 176902219 -71921 - MIR SINE MIR -102 160 31 425 293 95 7 chrX 176902856 176903003 -71137 - MIR SINE MIR -94 168 9 647 125 18 0 chrX 176903377 176903489 -70651 - L1MA5 LINE L1 -10 6290 6177 998 205 2 3 chrX 176904522 176904752 -69388 + L1MB3 LINE L1 5551 5779 -372 19297 158 32 70 chrX 176904756 176908396 -65744 + L1MA2 LINE L1 16 3795 -3928 189 0 0 0 chrX 176908396 176908417 -65723 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 19297 158 32 70 chrX 176908417 176910589 -63551 + L1MA2 LINE L1 3795 6049 -1674 357 109 0 0 chrX 176910589 176910644 -63496 + (TG)n Simple_repeat Simple_repeat 2 56 0 19297 158 32 70 chrX 176910644 176910675 -63465 + L1MA2 LINE L1 6049 6080 -1643 1651 16 0 0 chrX 176910675 176910865 -63275 - L1PA5 LINE L1 -12 6142 5953 19297 158 32 70 chrX 176910865 176912428 -61712 + L1MA2 LINE L1 6080 7110 -613 566 113 9 26 chrX 176912446 176912561 -61579 - L1 LINE L1 -1465 4681 4569 3534 94 54 35 chrX 176912561 176913151 -60989 + L1MA2 LINE L1 7116 7723 0 1972 133 29 46 chrX 176913160 176913575 -60565 + L1MB3 LINE L1 5774 6181 -2 358 96 0 68 chrX 176913575 176913629 -60511 + L1MB4 LINE L1 6112 6179 -1 475 313 97 57 chrX 176914500 176914925 -59215 - L2 LINE L2 0 3313 2872 294 50 0 0 chrX 176915545 176915585 -58555 + (CA)n Simple_repeat Simple_repeat 1 40 0 243 0 0 0 chrX 176915644 176915671 -58469 + (CA)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chrX 176916109 176916138 -58002 + AT_rich Low_complexity Low_complexity 1 29 0 300 274 230 0 chrX 176916176 176916289 -57851 - MER5A DNA MER1_type 0 189 51 318 26 0 0 chrX 176916396 176916435 -57705 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 191 0 0 chrX 176917499 176917546 -56594 + (TA)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chrX 176918157 176918178 -55962 + (GAGTG)n Simple_repeat Simple_repeat 3 23 0 1883 174 9 9 chrX 176920425 176920759 -53381 - MER1B DNA MER1_type 0 337 4 36 23 0 0 chrX 176920909 176920952 -53188 + AT_rich Low_complexity Low_complexity 1 43 0 737 280 70 36 chrX 176921210 176921799 -52341 + L1M4 LINE L1 4233 4841 -1305 371 359 36 42 chrX 176921835 176921958 -52182 + L1M4 LINE L1 4853 4975 -1171 2170 128 0 0 chrX 176921958 176922264 -51876 - AluSq SINE Alu -7 306 1 371 359 36 42 chrX 176922264 176922474 -51666 + L1M4 LINE L1 4975 5184 -962 419 289 35 18 chrX 176922849 176922963 -51177 + L2 LINE L2 3197 3312 -1 229 271 0 0 chrX 176922969 176923017 -51123 + L2 LINE L2 3265 3312 -1 1876 101 236 19 chrX 176923051 176923419 -50721 - L1PA16 LINE L1 0 6166 5719 * 3263 182 37 3 chrX 176923418 176924098 -50042 - L1 LINE L1 -1306 4840 4138 229 303 79 13 chrX 176924272 176924348 -49792 + L2 LINE L2 3208 3288 -25 450 36 0 0 chrX 176925081 176925137 -49003 + (CTG)n Simple_repeat Simple_repeat 1 56 0 316 211 105 76 chrX 176925280 176925451 -48689 - LTR40a LTR ERVL -42 477 302 * 852 262 78 29 chrX 176925311 176925776 -48364 - REP3 LTR ERV -47 515 1 761 306 198 45 chrX 176926133 176926852 -47288 + L2 LINE L2 1932 2760 -554 22 0 0 0 chrX 176929055 176929077 -45063 + AT_rich Low_complexity Low_complexity 1 22 0 4282 161 52 32 chrX 176930275 176930476 -43664 + L1MC2 LINE L1 5060 5255 -1089 1884 121 32 3 chrX 176930476 176930797 -43343 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 176930797 176930849 -43291 + L1MC2 LINE L1 5255 5304 -1040 1778 170 10 6 chrX 176930849 176931160 -42980 + AluSx SINE Alu 1 312 0 4282 161 52 32 chrX 176931160 176931906 -42234 + L1MC2 LINE L1 5304 6079 -265 960 215 62 29 chrX 176931909 176932382 -41758 + L1MC/D LINE L1 4986 5478 -743 340 273 62 12 chrX 176932379 176932540 -41600 + L1M4 LINE L1 3283 3451 -2695 * 2820 235 45 28 chrX 176932550 176933408 -40732 + L1M4 LINE L1 3612 4484 -1662 2124 127 41 36 chrX 176933416 176933778 -40362 + THE1B LTR MaLR 1 364 0 11313 98 11 1 chrX 176933778 176935341 -38799 + THE1B-int LTR MaLR 1 1580 0 1139 199 14 9 chrX 176935341 176935552 -38588 + THE1B LTR MaLR 1 212 -163 483 349 198 8 chrX 176935577 176935941 -38199 + L2 LINE L2 2839 3271 -1 250 304 39 0 chrX 176937696 176937798 -36342 - LTR33A LTR ERVL 0 523 418 1613 304 99 17 chrX 176937891 176938599 -35541 - ERVL LTR ERVL -342 5422 4657 892 236 15 0 chrX 176938648 176938847 -35293 - MLT1E2 LTR MaLR -2 624 423 1530 17 6 0 chrX 176938849 176939027 -35113 - L1PA3 LINE L1 0 6155 5977 1613 6 0 0 chrX 176939027 176939207 -34933 + L1P1 LINE L1 5417 5596 -559 1104 244 90 24 chrX 176939207 176939640 -34500 - MLT1E2 LTR MaLR -174 450 1 1420 232 54 12 chrX 176939641 176939973 -34167 - ERVL LTR ERVL -1335 4429 4084 1188 264 17 17 chrX 176940000 176940345 -33795 - ERVL LTR ERVL -1711 3943 3599 2223 267 98 19 chrX 176940376 176941020 -33120 - ERVL LTR ERVL -2190 3574 2880 2122 151 48 32 chrX 176941165 176941662 -32478 - MLT2A2 LTR ERVL 0 515 1 233 293 146 0 chrX 176941700 176941782 -32358 - LTR50 LTR ERVL -694 101 8 928 301 85 19 chrX 176942242 176942618 -31522 - MLT1I LTR MaLR -5 404 4 233 255 34 123 chrX 176943589 176943793 -30347 - MIR SINE MIR -18 244 59 28 0 0 0 chrX 176943978 176944006 -30134 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chrX 176944077 176944109 -30031 + AT_rich Low_complexity Low_complexity 1 32 0 335 274 35 0 chrX 176945870 176945983 -28157 + L1ME3A LINE L1 5749 5865 -305 520 210 102 27 chrX 176946200 176946386 -27754 + LTR33A LTR ERVL 324 523 0 1093 236 55 31 chrX 176946442 176946858 -27282 - HsTC2 DNA Tc2 -4 1894 1469 507 274 61 0 chrX 176946956 176947120 -27020 - HsTC2 DNA Tc2 -453 1445 1272 383 333 14 0 chrX 176947124 176947265 -26875 - HsTC2 DNA Tc2 -1751 147 5 694 261 66 40 chrX 176947290 176947516 -26624 - L1MEd LINE L1 -5447 672 441 243 0 0 0 chrX 176947950 176947977 -26163 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 230 266 0 43 chrX 176949126 176949220 -24920 - L1MC4 LINE L1 -1339 6703 6614 290 299 0 11 chrX 176949220 176949307 -24833 + (CATATA)n Simple_repeat Simple_repeat 2 87 0 1024 221 54 0 chrX 176949784 176950006 -24134 - HAL1 LINE L1 -690 1817 1584 224 235 0 20 chrX 176950502 176950553 -23587 + GA-rich Low_complexity Low_complexity 1 50 0 2231 130 119 8 chrX 176953881 176954266 -19874 + MSTA LTR MaLR 1 428 0 9086 176 20 2 chrX 176954267 176955888 -18252 + MSTA-int LTR MaLR 2 1651 0 2365 101 119 13 chrX 176955888 176956275 -17865 + MSTA LTR MaLR 1 428 0 243 308 247 7 chrX 176956827 176956973 -17167 + MER20B DNA MER1_type 14 194 -589 3146 156 125 114 chrX 176957098 176957564 -16576 - L1MC3 LINE L1 -12 7773 7314 317 82 20 0 chrX 176957564 176957613 -16527 + (CATAT)n Simple_repeat Simple_repeat 4 53 0 3146 156 125 114 chrX 176957613 176957713 -16427 - L1MC3 LINE L1 -471 7314 7217 377 265 0 1 chrX 176957713 176957810 -16330 - MLT1F1 LTR MaLR -443 124 38 3146 156 125 114 chrX 176957810 176958159 -15981 - L1MC3 LINE L1 -568 7217 6750 2461 64 0 0 chrX 176958369 176958664 -15476 + AluY SINE Alu 1 295 -16 592 162 162 6 chrX 176958686 176958859 -15281 + MER20B DNA MER1_type 545 744 -39 307 204 146 22 chrX 176958904 176959041 -15099 + L1MC5 LINE L1 7535 7688 -273 1966 169 0 0 chrX 176959060 176959368 -14772 - AluJb SINE Alu -4 308 1 216 0 0 0 chrX 176960525 176960549 -13591 + (T)n Simple_repeat Simple_repeat 1 24 0 486 289 54 0 chrX 176960974 176961123 -13017 + MIR SINE MIR 106 262 0 475 306 44 63 chrX 176961178 176961430 -12710 - MIR SINE MIR -11 251 5 215 309 143 32 chrX 176961582 176961708 -12432 + MIR SINE MIR 71 210 -52 25 75 0 0 chrX 176963306 176963359 -10781 + AT_rich Low_complexity Low_complexity 1 53 0 414 297 179 26 chrX 176964488 176964828 -9312 - L2 LINE L2 0 3313 2922 349 333 39 0 chrX 176964889 176964991 -9149 - L2 LINE L2 -484 2830 2725 2345 106 0 3 chrX 176965820 176966131 -8009 + AluSx SINE Alu 1 310 -2 30 27 0 0 chrX 176968324 176968361 -5779 + AT_rich Low_complexity Low_complexity 1 37 0 218 240 13 80 chrX 176969772 176969847 -4293 + L2 LINE L2 3184 3253 -19 223 260 0 27 chrX 176969918 176969991 -4149 + GA-rich Low_complexity Low_complexity 5 75 0 342 0 0 0 chrX 176971650 176971688 -2452 + (CTG)n Simple_repeat Simple_repeat 3 40 0 338 292 117 95 chrX 176971936 176972587 -1553 - L1M2 LINE L1 -5701 1148 484 348 188 0 0 chrX 176973511 176973580 -560 + (TA)n Simple_repeat Simple_repeat 1 69 0 328 289 0 11 chrX 176973583 176973673 -467 + L1MC4 LINE L1 6615 6703 -1339 195 129 0 0 chrX 176973674 176973705 -435 + (TATG)n Simple_repeat Simple_repeat 4 34 0 315 272 0 8 chrX 176973705 176973828 -312 + L1MC4 LINE L1 1995 6983 -1339 * 330 284 23 0 chrX 176973807 176973895 -245 + L1MC4 LINE L1 6894 6983 -1339 317 302 57 0 chrX 176973829 176973935 -205 - L1MC4 LINE L1 -1339 6703 6592 * 197 190 410 10 chrX 176973993 176974093 -47 - MIR SINE MIR 0 262 123